>Copia-3_ADe#LTR/Copia 3995-8998 59.5% sim to INGA_HV_pol, SW:1091, [Auricularia delicata]
MGVDKVSVPHLAENGSNFLTWRSDILDIAASQHADIAKYIKGLLDPAFDLDDHDETGRRIMRLRMGPVNKSLVLHATSAF
EMMTILAKTYRKSGIGAQVSVRQRLADLRADESTVIPEHCTAALDLRSQLFELGTPIPDEQFCITLLVSLPPSWQSFSSG
FKPDQFLPKIIKTLKDAPKTITAQVPVPAGTTAGTASTTAGTATTAGVTAGTGATATAAGAAAPATTSITFTIIVPQMVE
EKEPAEITPNDLVRRINEEYATRRAKDPSPSSDQSATTLLTSTGALPPAHFPHQAQLGMSFPDEHVLRAELKCFNCGKYG
HYSRECPEPRTAASLRADAAANWRQRGAGPSTPSARGGFTSRGRGGRPMPPARGPPRTIRVQGHIYTLSEGADVTADADQ
FPDIIDDVPAEMQAQVNAALDSAPAINFGHVWATYGAQDTMPDLVPDETHPVAAPGHAPQTGLNPHAAPFVPSGVHRDLI
AHTPSNLLDVPFDFVEMPDDPVAPPHSHATVLTVSPDAFFYDSGANVNVANRRDIFETYQATPGAFVRGVGTQRIPKLGV
GTVVVMAIGVGPTGERRTRHIRLTNVAHIPSAPTNLISVSRLTLGGRIVVFAAQSVHVADRTGEKIMTGSRQGELYRANV
IIQPAPTILFACTLQSLHESYGHANYDYLRRMVKEKRITGIQVTNLDEKPPTCAACIRAKHVRRPFPLASQRDESRMQIG
EIVHVDVWGRAPRKAIQGEEYFTHFVDRRTRYSVVYGAKEKGNQLQHIKWLQAWLMTQFGVRLKCLQVDEGLEFVNGTVR
AYCAEQGIRLQITAPYSSSSNRVVERAHLTILNMARAMMFAANAPGFLWFEAVLYAVYIKNRLPTRALAYASPYETAWGH
APNLAHLRTFGSKIWIHRPAKLRTKLDERSIAHVFTGFTEESRAYRYYKSGTHKILLSRSVRFEDNQPAGPEGARVPVEG
ENVDANLHYEDPIPLPPREGEREYHAEPRADDADIAPMSPSAVSEALSTPAIPAMPLPQAHLPPLPAPAIPVPQIPVAPA
PQPIPAPAPALAPAHAHAPAPVPQPRRNASPVRPCAESAKRSARLATVPRPDYGLINNPDSRSAKARQRAREAERAEAAL
NEEHAVADAAAHDEAEPVPDILDFVFMAQSLDDEPSTFAEAMRRPDADKWKAAIDAEMAQHHRFNTFRRTKLPRERRAIS
CKWVFKIKRNSDGEIVKYKARLVARGFTQKAGVDYFETFSPVVRLETLRSMLAIATELRLNVQVVDVVGAYLNGTLTEDI
YMEQPPGLHDGSDDVYKLLRSIYGLKQSALVWNATLDAAFLAMGFTRLVSDRCVYMRRSGDKIWIVAVHVDDMTLLATSA
DDNEALKREISKRFEIVDLGDIKQVVGLEVRRSPDLASTTITQTQYINKLLSRFGMAACNPAPSPADPNVKLTLFKGEVD
EARRAEYQQLIGSLHYTARGARPDIQIRTSMLSQHLANPGPIHMTAAKRILRYLKGTRDLGIVYTRSDGRPKLESFADAD
WAQDTLDRISISGQVFKLANGPVSWASRKQRTVAKSSMEAEYIAASGAASEVLWLRSLLRELGFPQEGPSLVRVDNTSAI
SASEAHSSDSKAKHIDIAHHFIRDHVAKGDLKLVHIASADNLADFFTKPLPRVHFEELRTRIGMTCSG
>Idefix_pol#LTR/Gypsy 762-4214 [Drosophila fruit fly genus]
PKQDGCKFSSSCLGHSNDREGHTSPYVKIIHHNKNYKGMIDTGSSINIIRENFENLEEKEENLIVYTIKGPITLKRSIII
KPTSVCPSAQKFYIHKFSDNYDFLLGRKYLEDTKAKIDYANETVTLGSKVFKFLYEEKKGETASKCLDPQEKNDSALVDR
TKPKMQKVKTAPKCLKPKHQQQKKETALPKCLISNVVKDTVDNDVTHLDPMSVDNDIVNFAINNELRECNEYRLEHLNAE
EVECLKKFLYEYRDIQYKEGENLTFTSTIKHVIQTQHEDPVYRKPYKYPQSVDQEVNKQIKEMIEQGIVRKSKSPYCSPI
WVVPKKADASGKQKFRLVVDYRNLNEITVNDKFPIPRMDEILDKLGRCQYFTTIDLAKGFHQIQMDENSIAKTAFSTKHG
HYEYTRMPFGLKNAPATFQRCMNNLLEDLIYKDCLVYLDDIIVYSTPLEEHILSLKKVFEKLRDANLKLQLDKCEFMKKE
TEFLGHIVTTNGIKPNPNKTKAITNFPLPKTPKQIKSFLGLCGFYRKFIPNFAKIVKPMTLKLKKGAIIDTKCKEYIESF
EKLKVLITSDPILIYPDFSKPFSLTTDASNVAIGAVLSQNHKPVCYASRTLNEHEINYATIEKELLAIVWATKYFRSYLF
GRPFEVLSDHKPLVWLNNIKEPNMKLQRWKIKLNEFDYKIKYLPGKENHVADALSRTKIEVMVGEVANSADATIHSAIED
NLNYIPITERPINYFSRQIEIEKGDNDTTSVQHLFQKLKIKIVYKEMTPELAKNLIKEYVCTKKSAIYFPNDEDFLIFQR
AFTEIISPNNFTKLLRCTTKLIDILTYAEFKDLILKKHKELLHPGIEKTINLFKEEYYYPDSQKLIQTIINECQICYLAK
TEHQTQMTYETTPEIFNTREKYMIDFYLTGNQIFLSCIDIYSKFASLVELKSRDWLEAKRAITKIFNDMGKPQEIKADKD
SAFMCLALQNWLRSEGVQISISTSKNGISDIERFHKTVNEKLRIIGSQQNVEDRCTKFERILYIYNHKTKHNSTKRFPAD
IFLYAGSPDFNVQQNKIDRIEYLNKNRHDFEVDIKYRQAPLVKSKITNPFKKTGRIGQVDDKHFEETNRGRKIVHYKSKF
KKQKKFNKSKYDNSRPTKEAQSTQHTSNNA
>Kusmar1_tp#DNA/TcMar-Mariner gi|12862367|dbj|BAB32436.1| transposase [Fungia sp. Kusabiraishi]
MENLKYRVIYEYEFHRGTSAAETARRINDVYGGGVTKENTVRFWFQRFRSGNFDLRNKPRGRPDTKVDNEELKAIVEADP
SQTTPELAAGCGVSDKIVLIHLKQTGKVKKLERWVPHELSETNRQTRVDCCVTLLNRHNNEGILNRIITCDEKWILYDNR
KRSSQWLNPGEPAKSCPKRKLTQKKLLVSVWWTSAGVVHYSFLKSGLTITADVYCQQLQVMMEKLAAKQPRLINRSRPLL
LHDNARPHTAQQTATKLGELQLECLRHPPYSPDLAPTDYHFFRNLDNFLQGKKFNSDGAVQTAFKDFIDSRPNSFF
>REALAA_gag#LTR/Gypsy 620-1840  [Alternaria alternata]
MADNVPNLNVEELAAYATTKSQAGVSDEEILREITQMLREDGWKEAAIGPTIEAVVKRSSVVGGKGSPRRGDSPKANQDA
MAQMMQQMMRLLSPMASRLEALERSQAEGRSESSLGANTTPPLSTPVAEPAVRKNKFPDPERFDGTRGNYPGWKFECEGK
LEYDCAMFPTEDARVRYVLSRTKDKANQVLLPWVLEHKERTVVGLWEHMDTHFQDVHQQQRALNKLRHLKQGRRPIRDYV
SEFNQLRVESRQQFSPVVAREMFSEGLREELQKLMLHTPKNGSLKEYMDKAIELSDDLYRIQLHGRNQRSTAHDGAQNHP
RAVQREASPEAMDWEPSKVSQARESRVKTKRAPLTCYSCGKPGHIARDCQSTTRVRRAKAVPNKNRRELEKELEDLSSSD
SEKEEL
>CZAR_gag#LINE/CRE gi|162248|gb|AAA30238.1| gag protein [Trypanosoma cruzi]
MTRSAAASRTPFIHRDSVDPSQLQDIITAATTEAIKRLTSPTNGRYTDNNGNRSWRSRSGRPNRRDAELLWRSQPPQGGP
QMMQGGNRSWQYRDQQPRRYRSQSSLERHNTSHRRREGLNRRFVRGPRGSDEGPHTNSGDHSQAPQPHPPGKKGGRAGVA
TRRFSGTTNQTKKPASCNSSASGARAAAYQEKHQRYIGATKTLVPWWTALYQSGAQNYHCPLCSFNRPGEHDVFYHCRQA
HPTYDKCYPYRLHLNGHCTFPVEKSCSLNAVLAVLSHYEDESQLSQEVRSTYTVPCRENTERIIRAMDVNLRWHRYRLWS
SSLKTIRSYGVCFPQRRWPESTARHAGGPCQWRMRIRPTRKHCRTNPPSSPCSRERRHPYNSHRSC
>Ulysses_gag#LTR/Gypsy 1286-2734 gi|103518|pir||S18210 [Drosophila fruit fly genus]
MGRRSATAEPSWRAGANANEFPGSLMRETDPCKGGSPGRLGGKNWRNSLDLHGTWSSQKPRKTQCSNPAANAAIAQAHQR
ISACSAIWHQRVHPRGDASWLHGNDEGHPLMCLGRQGAKPAETNTAPKPPRTCRAGTANRRHPERTEVFQREHSTTVPPK
PRRQAHRAEYSSSSPVYVADAQSRNWRNPNNRHFRVEDRRADDFQPEEAYANVRETAYMKLERWNVKFDGEDAMNSVEDF
VFRLEFLQRQYQCPWKEVLRGFHLLLTGRAREWYWMHVRHSRVDSWMQLRHALLDRFRGYQTEHEVMQELLQREQQASEG
VDDYIHHMRQLAARFQKPLRDRELVRIIKRGLKESLAKYIYAMDVLTVDELRQECLEVERHMGRRSRTGYLQPSRCPQGT
RPVVHEVEVPPHLTETPPGELEEAFVRTRNSSELYAGTRDSSTTSLETACPRSGKYSAIGVESRTRSARSVKTVRETPEG
AR
>Gypsy_DS_env#LTR/Gypsy 5511-6665 [Drosophila fruit fly genus]
MLGSPTSRMPTIIPVLDGEVLVYDQRSYLRHSSNISEFSSMIDETEKLSDSFPQSHMRKLLDVDTDHLRTMLSVLQVHHR
FARSLDFLGTALKVVAGTPDASDFLKVRITEAQLVESNSKQIIINSETQKQINRLTDTINKIISSRKGDLVDTPHLFETL
LARNRILNTEIQNLILTITLAKANIVNPTILDHADLKSLIEQDTPIVSLLEASKIKVLQSENIIHILIAYPKVEFKCQKV
SVYPVSHQQTILRLDEDTLAECERDTFAVTGCTVTTHNTFCERARRETCASSLHAGNTANCHTQPSHLNAIMPIDDGVVV
INEATARVRTDDGAEVTVSGTFLITFERSAAINGTEFINLRKASSKQPGTVRSPLLTSSDMTRH
>RETROSAT2_gagpol#LTR/Gypsy 1633-6198. [Oryza sativa]
MVYTRTGSRATGEGSNGEERADGVHPNSDSGNVPPPLPENPTLAQVMAHQTQMMAAMMQQMQQQHQQMHQRMMQHVEQQH
QQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGT
EVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQLIS
GDYADFERLVDKAIRQEDQRNKMDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNSSNFHQGSSGSQNHHG
SQPNRGAAPRPPMAPAQSGQPAQAKKETGVKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHASAEEAQAAPEVVLG
TFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELRTPMRVHTPGNSSTSVSFSPSVLIEIQRSPFLANLILLESKDL
DVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVHKSLVSPKQGASLNQIEAEIPVDTMEKNLRKLEDIPIVCEYPEVFP
EDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDY
RALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL
MNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAVDPSNVE
SVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTQLLKKDEKFKWTTECDKSFEELKKKLVSAPVLILPDPTKDF
QVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQPDL
NLRQRRWLELIKDYDMSIHYHPGKANVVADALSRKNYCTALCVEGMCEELRQEFEHLNVGIVEHGFVAALEARPTLVDQV
RAAQVNDPEIAELKKNMRVGKARDFLEDEHGTIWMGERLCVPDDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWV
SMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAHFIPVQTT
YTGKRLAELYLARIMCLHGVPRKIVSDRGSQFTSKFWQKLQEEMGTRLNFSTAYHPQTDGQTERVNQILEDMLRACALDF
GGAWDKSLPYAEFSYNNSYQASLQMAPFKALYGRKCRTPLFWDQTGERQLFGTEVLAEAEEKVRIIRERLRIAQSRQKSY
ADNRRRELTFEAGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPYKILERRGEVAYQLELPSNMIGIHDVFHVSQLKKCLRV
PEEQADSEHIDIQEDLTYVEKPVRILDTSERRTRNKVTRFCRVQWSHHSEEEATWEREDELKAAHPHLFTSSSESRGRDS
V
>RIRE8B_orf1#LTR/Gypsy 490-1290 [Oryza sativa]
MPRYKPEYLFGVKGFVQELRTMSFVIGFGTAPFYAQIPHDRHEKKCRVKVTLNSNSEDIPSVMFEAGGRNYIHSCQEVAR
IAIGELRDRYSDQLADTEYRYHPRQPQGSDRGSYLETEGIENDATTRHLVEMLWAMDESRAETVLAAQDREDRNRGKICK
LEDKVDRLEKELAALKGEAPPQKARIRLTARKRALFVLRYQLAPKVRVVEKEVAPTLADPPVIIISDDEEEESKRNHSKI
EWVATQDDEDEPNEPSIDLRCSEELE
>I_DM_gag#LINE/I 187-1465  gi|903725|gb|AAA70221.1| putative ORF1 [Drosophila fruit fly genus]
MTDPPNIYKITSKTYQSQLGEPKFIIIKRNDNNSFERTSPFIIKKSVDFACGGEVEGCKRTRDGNLLIKTKNELQARKLL
KLTKIADEDVTASEHKTLNFSKGVIYCNDLRHIDEDTILQELKPQKVSEVKKIMKRQNPNSNSDTNNITLVETGLIIITF
ESHKLPEIVRIGYETVRVRDYIPLPLRCKKCLRFGHPTPICKSVETCINCSETKHTNDGEKCTNEKNCLNCRNNPELDHQ
HSPIDRKCPTFIKNQELTAIKTTQKVDHKTAQHIYFERHGFQTKNTYAKTLTNGTTQRTTNTPSPNIHTNTTQSQQQNPH
HTPKSAAQNTSAKTPTTEPAKTTLLSNQPHQHHHHHSYDKLEDMDTDYTPTRKPSTTYSSQLTEDLKIKIFPKDKSNNLS
INLKASKLKAKAHKNKHTNNSDSESI
>YOYO_pol#LTR/Gypsy 2044-5226 [Ceratitis capitata]
YSRRKRIRIFRYTFFRLTNSTLPYFQCKDSNGDILKFLIDTGSNKNYIQPNLVKNSIPNNDIFYATSVGGKIKITHHTFI
DLFGLKDENLKFFVLPTLKSFHGILGNDSLKQLEAIIFTSKNHMLIKNKIKIAIKQQNATSVNNVGIRTTHLTDSQAEKL
RNLCQLYPKLFLEPDEKLTYTTVVKATIRTTTDNPVYSRCYPYPMSLKSEVERQINKLLEDGIIRPSRSPYNSPVWIVDK
KPDSLGNKQYRLVIDYRKLNSVTIADRYPIPEINEVLSHLGSNTFFSVIDLKSGFHQIPLKNSDIEKTAFSINNEKYEFT
RLPFGLKNAPSIFQRTLDDILRDYIGQCCYVYIDDIIIFSRNEKEHSTHLKNIFTTLEKANMKVQLDKCKFFEKEVEFLG
FIVTPEGIKTNPSKIEAIQNFPIPRNLKELRSFLGLSGYYRRFVKDYAKLAKPLTALLRGEEGRVSKSQSARAHITLGDE
ALAALEKIKNVLISRDVMLTYPNLNKDFELTTDASNYAIGAVLSQEDRPITFISRTLTKTEENYAANEKEMLAIIWALKS
LRNYLYGSAKVKIFTDHQPLTYALSNKNNNSKMKRWKAILEEYNYELKYKPGKTNVVADGLSRPPQQDQINSLTPTQHSD
ESSPQNLIPYTDAPINAFKNQLFLKTADTSSYQFLIPFPTYHRHIIEEPEYTEENLTNHLKRYLNPSVTNAIITDDHILG
RIQNIHPIHFSRYRIKYTRKIVKDLVRESEQESEIVKEHKRAHRSATENKAQILENFYFPQMNSKINKIIKQCKICLENK
YERHPSKLVLKATPVPNYPGHIVHIDIYHTNNRVILTAVDKFSKYAQARIVKSRATEDIKLPLQDLLTSFGIPEKIVIDN
EKSLNSSSIVFMLENQYSIEIFKTPPYTSSVNGQVERFHSTLTEIMRCTKAENTHNSFEELLNRSICKYNHSIHSTTKKK
PIEIFFGRSVYSDPSLLEKDRLDNIKKIVNKQEKDLTFHNKKRTEVKAYSSNDIIYVKINKRIGNKLTPRYKKEIVLEDN
GNTVTTKSGRSVHKSHIKAS
>CR1-B_pol#LINE/CR1 1493-4462 [Gallus]
MKGEGDKTKATGVERVVRGLVPNSMGKDGGVQRNGVGQGDAGNATVLGDPRSPIKAVRWKAQLKCLYTNAHSLSNKQDEL
ETVMHLESYDLVAITETWWDDSHNWNTTIDGYRLFRRDRRGRKGGGVALYVKEWIDCEELPLRNSQEQVESLWVRIRDGT
NKGQLVIGVYYRPPDQGEAVDEAFLLQMWEASCSQALVLVGDFNHPDICWKDHTASCKRSRRLVECIDDNFLVQVVDRPT
RGEVLLDLLLTNAEEIIKGVNVGGSLGCSDHALVKFMISRDVGLANGGVRTLNFGRENFKLFNGSLAMIPWNAVIKDKDV
EESWLLFKDALLKAQEVSIPLNRKVGRRDRKPAWLGKDLLGTLRVKKGAYKLWKQGRVTWEEYRDAVRTCRRRIRKAKAQ
VELNLARDVKNNKKTFYRYIGQKRQTKTGVPSLVNLKGELASTDEEKAEVLNEFFASVFTGGQDSSLSHVPEPCTPKPPG
GDQGGKSPPTLRAEQVRDRLMRLDEYKSSGPDGVHPRVLKELAEVVAEPLSIIFEKSWLSGEVPDDWRKGYVTPIYKKGS
KEDPGNYRPVSLTSVPGKIMEQILLDDMLDHMRNERVIRDSQHGFTRGRSCLTNLVAFYDGVTALVDEGKATDVIYLDLT
KAFDMVPHHILISKLEGCGFDGWTTHWIRNWLKGRRQRVVTNGSMSRWRPVMSGVPQGSVLGPVLFNIFINDIDDGIECT
LSKFADDTKLSGAVDTEEGRDAIQRDLDRLERWARVNLMRFNTAKCRVLHLGWRNPRHLYRLEGAVLESSSAEKDLGVLM
DDKLNMSQQCALAAQKANGILGSIMRGVASRDREVIVPLYSALVRPHLEYCVQVWRPQYKKDRELLERVQRRATKMIRGL
EHLPYEDRLRELGLFSLEKRRLRGDLIAAFQYLKGAYKQEGSKLFERVDNSRTRGNGFKLKEGRFRLDVRGKFFTRRVVR
CWNRLPREVVDALSLEVFKARLDGALGNLV
>RIRE2_gag#LTR/Gypsy 50-3001 [Oryza sativa]
MGSISGIDDLVFPPGQTFRFGSLDFVTNNFGKISLLDSESDQSGENRISVPFGFPNAAESYFKTISTESASNHSAEIASS
PTTPDQDDGAYPPVLMKLPDDLAAVSTTTASSSRRPRRKSASTPISPSFREVGVILQPLGTVSTDQLDDYNSSPTVDSRP
TDIVEYDEFSSRYNDFDDFDDFDGSLDDNYTPLYFGVFMANNETEEQRQARETEARRETERRRLEEEHQAQEQERLRREQ
QDRERTAKEAEDRRQRALEAGRRARDLIGQQDVEGTPVFRTPQQNAVAAITLLDTLLNQNELNQSDHVVNILNQTKTMIA
ASVPVNSESVHTPTGSRVPHFRSHDYRHPSLSITGAGSNRRSRGHDERSVHSPPDHHRERRVERPHSPPHRRPVDLRDTI
IQRRAARGHHHSPDRHDDDLDGVPAFTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPV
ALADSARSWLHGLTRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVIIA
AFTKGIRHEELVGKFGRKPPKTVKLMFEKANEYAKAEDAVTASKQSGPSWKPNKGTPAKGGGGSNNHKDRKRKPEELVAT
ATHSSRQRSRVNTFDKIMNSQCPHHPNSNHVAKDCFVYKQFAEQYTKTTRKNSDEEQSTSRKKDDGDTPAGFQDHRKELN
HIFGGPLAYESKRKQKLTEREINAVQPDTPHYLRWSEIAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSA
LNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAK
FMAVPHYTYMMMKMPGPRGVLSLRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEGEVPATKTSKSGESEAKT
KKIPLDPSDPTKTAVIGAELDCK
>MDG1_gag#LTR/Gypsy 1307-2620 [Drosophila fruit fly genus]
MDWQEIQNELKEIKTTFDKSYKCMTPNREVQQDTLNKHAQILVRCFNGARQLIYRERKRLTKNHLSQAVKFLNRFRENLL
NVKYRHNLNITIPTILSTPIVAEIGEDIESVGESEIEIKEEDLHDLAIPAVITLPELLEEELSDSNTGIRIQETDKMTDS
AATAREYVRQISSTIPEFDGKKLNLNRFLTALRLIDLTKGDQEMLAVEVIKTKILGPLSHKVENEKTIIGIINLLKASVK
GESPDVIKAKMLSTQQRGKTAAQYTTEIENLRGLLEAAYIDDGLDSNNADKFATKEAISAMTKNCGHDKLKTILEAGNFN
TMNSVIEKYIHCSTEMTGNSNSVLFYNNRGHYRGNNYRGNYQNRGNGRGNYNSYNNNYRGRGGYHGGNRGRGGNQNYNRG
GGYSRGNQNHNYKTSHAHNVRNIQSENEHTPLSDNLQ
>SLACS_TB_pol#LINE/CRE trypanosoma [Trypanosoma brucei]
MEGPSNPGENLGIISVNPNTCESIELTNQILAKTYTTSWTDMEVYARGNGRICTAYPDVDHPLQDVRGNVSSILERGERS
GGFETHPPRDPVTPRERHGNIQTRGAVIAPTPFHVVAAIPQQTRKRRWDILDGMVRRTVSQSTVDPKTVVMCVYRREEEE
TYDVLDEEEQDDDLLGIPNPTPRRLRISQAGPQQNSWVDTRGRRAYGSQEEQDERTSTDQVSIFSHDETRELSSPLECPI
VGCTASFVGPRRWEKAKSHIYGVHSLEEVREIPRGELICKGIVRCETCATLLPTSDRAKQAHRDDCRPYLPRKENIRRKR
AAEREATEASAQQGIALRLERQGPYITPRDIEEPTNTTTESWWREKVATKRYLHRKEWPQWLDICRTVLLGYSASSQGER
HQRQVMLLDLVRNHLHTRTARREQQQQRGKDNQEEEDRQKKEEKSLRNAWKPCASSVRQGGQPSSSQPKRLNRWSTAPKW
LKQSGNCTRRRISMIFPGPPVEQPGVVSVDAEEVAKTIARRLTRGAAPGLDGWTRELLYPLTLDPALKMEIAAVVKDIIN
ADVSMEVGRRLQATSLTVLRKPNGKYRPIGAESVWAKLASHIAISRVMKTAEKKFSGIQFGVGGHIEEAIAKIRKDFATK
GSLAMLDGRNAYNAISRRAILEAVYGDSTWSPLWRLVSLLLGTTGEVGFYENGKLCHTWESTRGVRQGMVLGPLLFSIGT
LATLRRLQQTFPEAQFTAYLDDVTVAAPPEELKNVCAATAEAMEALGIVNNADKTEVLELTGDTGFGTAVKRVREFLERT
WPDPMSEEIREGVEKKAMETDRLFKAIVELPLYNRTRWRILAMSAMPRITFLLRNHDMQHTHRVASWFDERTTQVMEHIL
GQPMTERARNIAALPVSMGGCGIRRMAQVAEYAHQCAGEKGLQQRKTEEADQRQQDDLYATLGGADRQVFTANTAAGAGR
PLTDAQVRLDDATFGVYLRERYCRVLPEGVKCLCGEDASNHHIHTGTKVHNKPRQMRHDIINSVFANGLRLCGFQCATEP
RLNEVSKRRPDILIAGLDTYAVTDITVTYPGRVTVGNTAQGQRSVAAADPMKAALVAFQEKERKYSYWAIQNGLAFAPFV
MLTNGAIFGKSRDWLRRVLRGQDHRLTVTTAFDGITADVVAAVLRGNVHVYSAAQARGETLR
>ZAM_gag#LTR/Gypsy 1317-2348 [Drosophila fruit fly genus]
MSKKLTQTIKQTTRSVLESHTFPKRVTRSVSKTNTLPVIRESTPLPPLQPINMDSGNASVGNSAPVTPTVSGFSSIATAL
SATDILAFVKELPTFDGTPGQLDKYITSVEEIIMLIRGTDQTPYGLLTLRAIRNKIVGRADEALNLANTKLIWDDIKSNL
LRLYSSKKSEATLLGELQSLPDNLTLGQLFFGLSRIRSQLISITSNSGQSATIIEAKKTLYDEVCLNAFISRIREPLKTV
IRLKDPKTIETAYELCQGERARYQNRNPYPPTQNNTERRTNNYNNNNNNNHRDNNNRNNVTRLTPKTTQTITQTPIPNIV
NQTTATELVTRLKIIKQIMGYTT
>YOYO_gag#LTR/Gypsy 683-2095 [Ceratitis capitata]
MAHNDIIRPSMLASAPRAAAPPLQPNPLQPNPPTSANATPELRNIIRDLMREILATEEANIVRTSTQTMTDQIIEERFRD
NLTDMDKVRDVVRSLREFGGNPAEYSSWKKSVERILKIYEPNMGSPKYFGILNVIRNKIVGSADAALESYNTPLNWKAIS
KCLTMHYADKRDLSTLEYQMTCLLQGRRTVHEFYAEVYSHLSLILNKIACMDINEEAMRILTHTYRDKALDTFVGGLSGD
LSRLLGMKEPADLPEALHLCIKLENQNFRTIHANNQYSLPRKPNLPLLPLGMHHQHKPPIPQRNINHNNQPFYPQLAHIP
QAINPINRFSQHPQYRQHQYQYHPQYQYQPQYQQQQRFRPNQFFNTPPRPIQPKPPIPMEVDESLQTRNVNYMNRPNKIF
AGKRPIVPSNQIRQPFKQSRINNIIAVSAPQDEEQTSKDYYDQYSAQDNNSNDNILEENEYEFSDIHFLD
>Quetzal_tp#DNA/TcMar-Tc1 373-1398 [Anopheles albimanus]
MTREELSVSKRQDIIRLHGAQGKSYTEIAMLTNINRNTVARVIQRYKYEGRVSNLPRKGRPSVCTDRMRRAIKRLVDAEP
EISAQSVAIVLNERHGIAISCETVRRYIHKFGYKAYNRRKKPQISPINRKRRLEFAKKYVNHPPEFWKKVLFTDESKFNI
FGWDGTIKVWRPPGEGLNPKYTAKTVKHNGGGVLVWGCMAANGVGNLQVIDGIMDQYVYINILKQNLGPSLEKLGMSQDY
WFQQDNDPKHTAFNSRLFLLYNTPHQLKSPPQSPDLNPIEHAWELLERKIRQTRIKNRVDLENKLKEAWITISEDYTQNL
VNSMPRRLAEVIKMKGYATRY
>Q_pol#LINE/CR1 1264-4413 gi|11359829|pir||T43020 probable reverse transcriptase - African malaria mosquito retrotransposon Q retrotransposon Q [Anopheles genus]
MIPWKHPTQHLFLDRPKTTVLHLRTYTSLQSIAFFSTRRSSAHCTQQTRQASCSDNAAQLTYRLPALSNRHNDNATAEYL
SCYYQNVRGLRTKTKEFHLAVSEADFDLIALTETWLVDNIPSALLFNNNFSVYRCDRSLSGSSSRGGGVLLAVSNAYESI
ELPSRDRSLEYICVRVACNNAHLYVMVVYIPPQLSSEISTLRSLHDCISSFTLRLKPSDLLFVIGDFNQPSISWSTADPS
SSPAYSSITHYEPTARSLANNTFVDGFKFNGLVQLNHINNSHGRMLDLLYANNAAAKLCSPVFPSVVPLVPLDSYHPALD
FNIRINSSTRRNSTTRQNSTTTALYRYNFAKADYVKLNDMISMFNNSFHCSNFISLDEAVCSFSSFMLQAFVVCVPVQRP
KPNPPWADRTLKRLKRVKRAAYRHYQTRRCQRSRSIYFDTHSLYCSYNRFRYRRYLSKIQRNLCRWPDSFWRFYNSKTKS
THTPKSITYKGATSANTNEMCNLFADRFADCFSPAMNDTDTIDAALVNTPAGAINMSTPFIDSEIVLSALAQLKPSFAPG
PDGIPSTVLKRCQTTVAPILAKLFNASLANGYFPKAWRKSWMVPIYKKGDRTDAINYRGITSLCAIAKVFELVIYKNLLH
ACRSYLSPYQHGFVPKKSTTTNLVEFVTYCTSQIDAGAQVDAIYTDLKAAFDSLPHAILLAKLDKLGIPSPLVQWLKSYL
IHRTYIVKIDKHMSKEIVSSSGVPQGSNIGPLLFILFINDVTLALPPDSISLFADDAKIFAPINNTGDCTFLQDCIEIFC
SWCKRNGLTICIEKCYCVSFSRCRSPVTGTYFMDGTAVNRQNHAKDLGVLLDSSLNFKQHIDDVVARGNQLLGVVIRTTN
EFRNPMCIKAVYNCIVRSVLEYSCVVWSPTTASSIARIEAIQRKLTRYALRLLPWQDRNNLPPYAARCRLLGLEPLSVRR
RNAQCSFIAGLLNGSIDSSPLLHRVDIYAPSRTLRSRETLRLAQPRSSAGRSDPMFRMSAVFNTVSDCFDFDISTQCFKE
RLRLLPWPQ
>Juan-A_gag#LINE/Jockey gi|159575|gb|AAA29355.1| DNA-binding protein [Aedes aegypti]
MVSTTNKRKGESLNSLLPSKKVGFKTVTTRGKNGRKDVSPECELSSKGEMNNCIEMSNQFDALDKFSEHQIEAASSSGSL
IQVRKQRVPPIVVSCSEFGGFRQEILNSIRGIKVSFQIAKKGDCRVLPETLKDRELLLKHLEEKKHNFFTYDDKTERLFK
VVLKGLSSDYKSPEEIKNGIIDLLGFSPVQVIIMKKRTQSGIVRKGLSQEFYLVHFNKKELNNIKALEKAKLLFDVRVTW
EHFQKPGGNYQNPTQCRRCQKWGHGTKNCRMDAKCMICGGSSHTKDVCPVKEDTTKFICCNCGANHKSNFWNCPSRKKVI
EARARQMKDNIRYDNGRFRNLPGRVSNNAHFSVNDRLIMNHTHQEDHNHAHSQTNFIPSGSRSNLSTSNVSTHGKSFADI
VAGNSNSSPVRSMGTHSTCFKSNGKNPTATGNSASSSAENSNGKSHDMSASDFNFLTEQLNLMIDAMFKATTMTEAVQVG
VKFTNQIVIGLRFSNGSK
>TF2#LTR/Gypsy 168-4169 [Schizosaccharomyces pombe]
MSYANYRYMKARAKRWRPENLDGIQTSDEHLINLFAKILSKHVPEIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKR
QYTLNHLEELEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLF
ILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSS
NKFLNHTRKRYEMVLQAELPDFKCSIPCLIDTGAQANIITEETVRAHKLPTRPWSKSVIYGGVYPNKINRKTIKLNISLN
GISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGL
EFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY
PLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESH
VVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRK
ELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVG
AVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKR
LARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN
EDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC
QINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY
FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNN
AIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMV
KRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESDIGTILHIL
EHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNLNI
>CR1-B_gag#LINE/CR1 201-1490 [Gallus]
MGAPQWKVGVTKTVETQAEVPCSSRRKTVAKKTVDSQTEDLCMHERKADGKICVVTQIEVPSRDASTQVTGCVDCWSLAF
AVPDDGGRTCIRCDQLNDLLSLVIDLKEEVERLRTIKDCEREIDWWCQSLSALKSWHTAEALHGACQPLPPCKQVVEGNR
PADGAAVSSLSSPPPSSNLREEEEWKQIPARRGGHPPSRPSSAPQVPLHNRFEALELEGGVSETVEGGPPVRLPRVKRST
PHLTTASTRKDRRVVVIGDSLLRGMEGPICQPDPTRREVCCLPVARVRDISRKLPGLIRPSDYYPLLIIQAGRDEIAEKS
LSSIKKDFRGLGQVVDGAGVQVVFSSIPSVAGKGTERIQKTHLLNKWLRGWCKHRNFGFFDHGAIYSAPGMMAADGSSLS
LRGKRILAEELAGLIERSLN
>Gypsy_DS_pol#LTR/Gypsy 2371-5400 [Drosophila fruit fly genus]
MLIDTGAAKNYVKPLTELRTITPVAKSFSVNSIHGSTEIKRKCLMNIFKHTSPFFLLDTLNSFDAIIGFDLLTQAGVKLN
LEKNTLEYQGISEKLQYYQCADVNFTDVNDIVVPPSVKKQFRDMILRNKKAFSNADEALPFNTAVVATIRTVDNEPVYSR
YPSLMGVSDFINKEVKQLLDDGIIRPSRSPYNSPTWVVDKKGTDPYGNPKKRLVIDFRKLNEKTIPDRYPMPSIPMILAS
LGKAKYFTTLDLKSGYHQIYLAEHDREKTSFSVSSGKYEFCRLPFGLRNASSIFQRAIDDILREHIGKICFVYVDDVIIF
SKNETEHVQHINIVLKCLLDANMRVGPEKTQFFKESIEFLGFIVTKNGATSDPKKVKAIQEFPEPKSVYSVRSFLGLASY
YRVFIKDFAAIARPISDILKGENGSVSKHVSKKIPVEFNEVQREAFLRLRNILASEDVMLMYPDFQKPFDLTTDASASGI
GAVLSQGNRPITMISRALKQAEQNYATNERELLAIVWALGRLQNFLYGSREINIFTDHQPLTFAVADKNTNSKIKRWKSY
IDQHNAKMFYKPGKENLVADALSRQNINALQDELRSDAATVHSELSLTYTVNSTDKPLNCFRNQIVLEESRFPLERNLLL
FRSKTRHLISYTDKSTILDTLKQVVNSGVVNAILCDLPTLASFQHDLILLFPATQFWHCKNLVQDVTDKNDQLEIITAEH
NRAHRAAQENIKQVLRNYYFPNMGNLAKEVVANCRVCTKAKYDRHPKKQELGETPIPSYTGEMLHIDIFATDKKQFLTCI
DKFSKFAIVQPILSRTIVDITGPLLQIVNLFPATKTIFCDNEAAFNSETITSMLRNAYGICIVNAAPLHSTSNGQVERFH
STLTEIARCLKLDKKISDTTELILKATIEYNKSLHSVTREKPIEVVHAAAGDRREIVKDRLVKAQQDNIKRCNASRQNRV
FEVGEKVFQKNNKRLGNKLTPLCSEQKVEADLGTSVLIKGRVVHKDNLK
>SLACS_TB_gag#LINE/CRE trypanosoma (ORF starts 112 AA earlier) [Trypanosoma brucei]
MVRNLRSSEPQKISRFPRHHGEGKKASSPALNLQWPGQKQVASAVAPEMRKRAPPKNNNTSIHRNCRKHLRKEGDWWIVE
GGQNHKKAAHSPLKTKPVNKEGNRKKYGRPPREVEGKWLTSLIAATTEAVLRQLGKGKSPTAHTKSNQSRVPLQHSEKTA
KGIKYATPQPKKKAHEQRKELPHWPPTKRSHGANKGQGAPVRAPAKTQGKGEEQPHTMRTWAQVAAPKKQKVTSKPPMAQ
KKKAQGEKKGAAANPFHWELQVEQLLKDAEQIRESMYIRFLHVRQSWWSTCFKAHMEFHCPVCGFAHPEETITVTHCRQQ
HPGGPPDSLHPDNNRESGAVSQVPPAHFRRWWLSSHIWRKRKISTLLSPKLPVPEQGDYPNARSGIGTGAPHSPHHCDRS
AGPP
>CRE2_pol#LINE/CRE crithidia gi|1362544|pir||S58380 probable RNA-directed DNA polymerase (EC 2.7.7.49) - Crithidia fasciculata retrotransposon CRE2 [Crithidia fasciculata]
MAKMMKYLKEKMCLSGAGSNSQGKEKTSLRVRCGLPPVYPRVADGRTEEGEFVFGGKKQPAATTPPLPPLTTQPQGFQVT
AELVEQVLRILQTGGIPVPTPPHTGTTTPATHQSEAPPQTGLATTRDTRATDRKQTPQRGPQEPKREVPTPRLVAPQPSV
PPGFRLVPARASTPPRWQREATAQAATTTGAANRVSTPQQRTPTTSRSATPQPNIASPSGAPPRYNATRLSPVTPLLVPV
PPRDGRTYAQATRSTTPILYNAQHGTTTSATRQATPSLWAARASTATPHRAPSPTVRLPTRTVPPAILTEEQRKADPEFH
QVRTQNQRHRRMLEALVASMKDSEATAAHYETSYMYAKVLAEHAEMGREGLRRHFSLLADNYPKAHPVDRPYWYCQGQTP
EGRPCTYAHEHEAVMRSHIAKRHEGQRVEMRQHVLSSYSGGAHNGRSTCAATTAAAMWSTRPDARRDTATWAAFKKSTPA
ATKAMLQDLRLAVPTTARRALEAVVAREADTTQDDQETHQKLILVSGRVNRAVGAADVTTQLAKMVTEKHDESAYEDVTE
VAFNILAPAGATGIEGMPHVPEKIELPSASTKQTIELNLHAVASATEPTHLTAAVREVQKRRGIEITTWHRYDGAVHTTS
PTAPPSNSVVMLLYTRAQTTQDEQKQLTLKGADGDKDDDTYSFLSDDSDTEDRVPEDIDDRTSTSFTQELSPQTTAEDGE
HVFGGHVDPAVLGDWSEEDDSLEQETADRACRGSAAAKTERHRSMTKFLERLAQHESMTHSPTSPGDVIRAVIEEDEASS
ALFACGIETARTCRSCGYQVDAEVLDDIAVVTVTNTGLRQDNLSTQQLDDAINQHTIYTPEECARCGRETASATHRLVQW
AVAVVLPEKEDTTQTTEERHLPRTVMATNGNGSQCTLHLVAMANIHAHRTAEVWEMVARHSDGNEQWRRRGHTDEEDQQT
ETERRGNVLLYTRDAPTVLAVFTTAARSTSAVEESTALTNVTTPQPAATPEHRQETRATQDAQQTQRETPTPQRSLEGIL
EEVTGVRPRSAVSNIEAVRRMLCSIASGKMRARGGISINQAFATLANVTQEWRTAFADNGWERRGCAACGAREGQKLFDS
QLSIVDVAIRMKEEISTTDLTAALGIRKTQTSDACPVCDAHMQSTIQHVPGKAVMFSIEEATATGNQITTRVAPPTFTHK
APNGAEVTRSLLAVIDTTTGPEAQVHRVTANWGTAAQRWCKVLPEGGEQETKPTVPPKGNLLCYLSHKPRVTQTAQRTED
DDHRDTNNEEISSSSHQAPKKRERPASSTTTPPSMKPSNCSEVKIDTTPGRQRQPHNREEEQTRETARAPTYPTDNAANE
NASARKREEQRGPLGGATSTSPVVINSSADFSMVEDTAATPIQRTMSFTLDPLSPEDEDAVAPDPFLASIVQVVGEEDEG
TAEAPSMNNGENSEPAETPTRSLFEAEDVPLPASIIDVDDGAEEDAPHAQNNGQQVRNAATSPQRDRVTPPPDARHCPLC
PHTPKNQSTPKPQRFQQLCSHMNIKHHVAEVAEAVLEAAGLERCSRCRQFLRRTQRARESHRCEPQAGEPTRDEEGGETQ
HGAPRATATVRDFRHDSPTADDTEWLEKTSSTVRHLHKKEWGHWLVTVGTVLTGYTASVEEERWKRQLAMTTVVRDNLGR
QRRGDGETSQAQPQRSEANTAPQGRGEETTATQPHRAITEENWGQDRAAEEEGQLPQQHKGMTAEAEREEQNRKRILNQL
SLGALGKAARSLFNTQLPRATIEEARPQLEALHPQASVSDLPLPSETPFLHAVKPERVRAVITKQLGRAAAPGLDGWTRE
LLVPITEDKGLLTELTALVQDMLVGNVHPSFATRIRACILHPFRKEAGSAKVRPITPESALMKLAAHIALDSVEKSFRST
FKGWQYGVWGDSTEAVKRIREAYAEASSDTLVALDATNAYNRMSRRHILEAAYAQPELRFAFGVVNLSLGAAGELALYEN
GAKIHALKSTEGVRQGMVLSPLLFANAMSGIIRPLMEMHPRVKVVAYLDDVTLIGPHAAVQDFLAEAGPQLSRVGFDINP
AKSHHLAKLEVPEALSVSGRTIPIAQGVVRILGAGFRGDTASVEEWVWEKTKTHDHYFEKLQSEWLPRLARLQLLRGSTV
PRLNHLLRTHKPEELNRSTTWFDERVMETALNIANIGDRRNADDGDPGHTPPDPLRETRLLVRLPMAMGGLGLRSQKPIA
GFAAECVGTKNAQRERTAVVDVEIEKSLHSLLSEPALLLLDANTATGATRALVDPAVKMSDRAAEVMLKQRLFQRVLPVG
WQCVCGEDATNEHINRCRQAEGGARIARHNKVRDTVIGWATEIGYVARAEPPTQNQLATTIENSHRRRLDVEITTPNGTF
TTDVTVTYPGRTGLGTHAVQEAHTNKLAKHGDDARAQDKIFAPLALESTGGIHKDGFQWMRRLAGVKPHPYTPNTALSML
LTKVAQALHEGNAYMFHVADQAHKHRQLGRSVGEVQE
>BEL-6_DBp#LTR/Pao 276-5561 via tfasty with BEL-6_DPer, 2 frameshifts and 2 stopcodons. [Drosophila bipectinata]
MSKPKPASTSSAESETMAKGGNADSLFALQKDLHNQLNQLQVNFKKDSTSRKTKPYFQLRLSKLNLISQQFNKNHQEFVS
AGYPTHPYFVDNLADQFEEEFITAFCLISTESETLFPSQLPACAEQQATPVPKILGPGAAVQLPKLPVPNFSGKYTDWPA
FHDLFMRLVHQNQALSNIQRFHFLKQALPKEQDDLPFISRESSSEIKHMLNVTNVCINEFNRLKTNIHSSTQWIVHHLIA
RLPTTTVQAWEHCLGNSSDIPSFLDLETFLNNRLVSMNIIENRKCSQPTQNSTINKSTNYPRQNPKQKGSGFYKGSTFHT
TTGTSGPISCVNCKGQHILRRCPDFLSKDCFARKRIIDHTKACLNCLSIHHPLSQCGSNKNCLQCGHRHHTLLHFPTTYT
SSSPIIQNAASESSDPAHPSDSTTVLMATAAQSTRSILLATALVQLHNNSTGQTAVIRALIDHGSEGTLITERAAQLLGL
PRHRVTAQITGVGDNSKNICRFSTEFSISSCTDPQFHHLVRPAYVLNSITSHLPRSNVNVDTCQHLQGLHLADPTFTRPG
RIDALFGVDLIPYLLLPDLRKGASNQPIAQLTQLGWIVFGHSNETRANVVTIRCHQTNLDALVKGFFALKHxTENLDQIS
SERTLTAEEQWCEDHFQRTCARQPNGKYLVRLPLKTEFDKEQVIGKSHQIALNRFHLLERRLNRNDTLKQQYHSTIKEYF
DLKQLSEVTTAEARHQMITPRGQQYFSSCTLPHHAVVKEDSTTTKVRVVYDASCTTSNGKSLNDILCIGPPLQNDLGGVI
IKWRLHRYVFAADIQRMYRCIDMHQDDAQFQRILWRNDQNEIAEYSLNTVTFGTASAPYTAIRVIRQLAHDEQHRYPLAT
PVLLNEVYVDDVQTGHNTVHGALEIRNQLIATLKSAGMELRKWASNHPQILSGIPDQHMAQKRHVEVNFQETIKTLGLYW
SPHEDLYSFKVRFDLPASFTKRSFLSVVARLYDPLGFIVPVTTAAKSILKDIWQWRPETSDKTQPALDWDGPLPPILQAR
CEEFRHHLPNIEQLKIPRWLGHQTGXPQSHQLHVFCDGSSQAYAACVYLRIQYPSGRVSTALLXARSRVTPTKPLTIPRI
ELSGAVLAAQLXKWVLTQFSSTGIPTSVNFWTDASIVLYWIKGNPTRWKTFVSNRIGKILELSTTTQWQHVPSGENPASR
GLTPHQLARHDIWWFGPDWLREDENRWPKNTSSPPPDQHHEERRQPTNITAHVCSLGDSIITSYSSYNKLLFVMAYIIKY
LHNLRHSQELRNVGAIRVPELREALHKIVRMVxKETFPQEISRVLARKSLSRHSALSALCPFLDDFGILRLEGRLKNAQQ
LSQARKNPIILPKSHHFTDLVIKNAHLNTMHGGAQLTRAIIHRQFWIVNGKQAVKRVLRQCVACFQHRPKPSRQLMGDLP
YHRVNPPKRAFEATGVDYTGSIDVKASRFRGHTTYKAYIAVFICLASKAIHLELVTGLTAQHFLWALQRFIGRRGFVRHM
YSDCGTNFIAADKSLRLWSNEFRQEIDRTVVPELTKRYIQWHFNPPHSPNFGGLWEANVKAVKSHLHRSFKGYPMTYEQL
STVLIQIEACLNSRPLCPLTADINDLQVLTPAHFLIGDSMQSLPTPSDKDKSLNARFVEGQRILRQFWKRWSSDWLSHLQ
ARPKWRQEEENLQVDDLVIIKDDRTGPTDWKLGRVIELHPGADGMVRVATIYTGSGTYKRSVSKICRLPISTNPTSKPEE
VQ
>Mosqul_Aa2_gag#LINE/I 636-2126 [Aedes aegypti]
MPPGLDPFPLGDPGPSNCRDGEFAGPRFPEWGDPQGNYGQLVMMRMEAVSGNLPQAPFLLRKSVESYLGAKVDGAYPEKG
GTTYVLKLRNKNHAEKLKRMSKLTDGFPIKIVEHPVLNVSKCVISCSDTCVYSDTELVEELKDQGVKEVRRITRRDGNQR
INTPTIILTLQGTVIPEDIYIGWIRCRTRPFYPTPMLCYCCWDFGHTRARCQHQNNPTCGNCSGKHQTDVENPCLLAAFC
KRCNTNDHPLSSRKCPTYVKENEIQHLRVDLGISYPAAKRQYEQRHGSKSMASIVADSNDRRYAELSAKLDNVLKVVKSK
DAEIETLLTELKNKDAHIEKLESTMKLTPQERLNTVKEHGTIKDLVNKIHSLESELARKDREVAMIREIYIPKKSSTSTG
NKITKPDVSNGCNTGHDDRNSSHTNQSEASQIKKTGKKKKANKTDSYERLNKRTKNRLSPSTTPECTFTPETSPADIEIS
SGDEPMLNVSGYISDS
>Juan-A_pol#LINE/Jockey gi|159574|gb|AAA29354.1|  reverse transcriptase-like protein [Aedes aegypti]
FKYFKLNARSLNGKEDELFNFLTVNNVHIAVITETYLKPGSKLKRDPNFFVYRNDRLDGACGGVAIIIHRRIKHQLFSSF
ETKVFETLGVSVETQFGKYTFIAAYLPFQCSGQQVNLLQTDLRKLTRNKSKFFVIGDFNAKHRSWNNSQSNSNGRILFDE
CSSGYFSIQYPDSPTCFSSSRNPSTIDLVLTDSSHLCSQLITHADFDSDHVPVTFQISQEAILNPISSTFNYLRADWNIY
KTYVDSNLDVNISLETKLDIDNALETLTNSIVEARSIAIPKCEVKFESVIIDDDLKLLIRLKNVRRRQFQATRDPAMKII
WQDLQKEIKKRFAQLRNKNFENKISQLDPGSKPFWKLSKILKKPQKPIPALKEENKLLLTNCEKAQKLAMQFESAHNFNL
GLTSPIENQVTQEFENILNQENVFENAWETYLEEVRTIIKKFKNMKAPGDDGIFYILIKKLPESSLSFLVDIFNKCFQLA
YFPDKWKNAKVVPILKPDKNPAEASSYRPISLLSSISKLFEKVILNRMMAHINENSIFANEQFGFRHGHSTTHQLLRVTN
LTRANKSEGYSTGLALLDIEKAFDSVWHEGLIVKLKNFNFPTYIVRIIQSYLSNRTLQVNYQNSRSERLPVRAGVPQGSI
LGPILYNIFTSDLPELPQGCQKSLFADDTGLSAKGRSLRVICSRLQKSLDIFSSYLQKWEISPNASKTQLIIFPHKPKAL
YLKPSSRHVVTMRGVPINWSDEVKYLGLMLDKNLTFKNHIEGIQAKCNKYIKCLYPLINRKSKLCLKNKLLIFKQIFRPA
MLYAVPIWTSCCNTRKKALQRIQNKILKMILRLPPWYSTNELHRISMLKHWNKCQIQSLIISGKNRYNLLLPRLMRYMFR
LS
>Sushi_gag#LTR/Gypsy 17-1129 gi|3510504|gb|AAC33525.1| gag polyprotein [Takifugu]
MSQGGTPGQPGGPRTPTLPSPLERRVEAHSAQLSSLQSELTKAFPTIQGEISELQSSSQTTSSTLSALSNQMSAMATVLA
SIIQKLGSDPGGAAPSEPSLPLSPRAEPNLASPRVFGGDFDLGKGFLHQCELLFRHQPSRFVSDEAKVGFITSLLADKAL
SWAIAAVDLDPRLSSDYSAFRREFKAVFEHPTYGEDAASRLLALQQGSRSVAEYTLEFRILAAESRWGETALRSAYRRGL
SEAIKDLIVRDRPSSLNELITLSLQMDERLRERRQERAQRAGGSTRQLSHRTSSAPDFSLTSTAAPPPHILLQSPAHPSP
RVGEEPMQIGRSRLSRQEREQRLRDQLCLYCGNNGHFIQACPVRPKGPAHQ
>P_Dme_tp#DNA/P gi|85092|pir||A24786 P element transposase - fruit fly [Drosophila madeirensis]
MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKVIEP
EPEKIKEGYTSGSTQTESCSLFNENKSLREKIRTLEYEMRRLEQQLRESQQLEESLRKIFTDTQIRILKNGGQRATFNSD
DISTAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVDIKRGCLDVVIDLMDSDGVDDADKLCVLAFDEMKVAAAFEY
DSSADIVYEPSDYVQLAIVRGLKKSWKQPVFFDFNTRMDPDTLNNILRKLHRKGYLVVAIVSDLGTGNQKLWTELGISES
KTWFSHPADDHLKIFVFSDTPHLIKLVRNHYVDSGLTINGKKLTKKTIQEALHLCNKSDLSILFKINENHINVRSLAKQK
VKLATQLFSNTTASSIRRCYSLGYDIENATETADFFKLMNDWFDIFNSKLSTSNCIECSQPYGKQLDIQNDILNRMSEIM
RTGILDKPKRLPFQKGIIVNNASLDGLYKYLQENFSMQYILTSRLNQDIVEHFFGSMRSRGGQFDHPTPLQFKYRLRKYI
IARNTEMLRNSGNIEEGMTNLKECVNKNVIPDNSESWLNLDFSSKENENKSKDDEPVDDEPVDEMLSNIDFTEMDELTED
AMEYIAGYVIKKLRISDKVKENLTFTYVDEVSHGGLIKPSEKFQEKLKELECIFLHYTNNNNFEITNNVKEKLILAARNV
DVDKQVKSFYFKIRIYFRIKYFNKKIEIKNQKQKLIGNSKLLKIKL
>Desmar1_tp#DNA/TcMar-Mariner 170-1213 gi|805122|gb|AAA66077.1| transposase [Mayetiola destructor]
MENFENWRKRRHLREVLLGHFFAKKTAAESHRLLVEVYGEHALAKTQCFEWFQRFKSGDFDTEDKERPGQPKKFEDEELE
ALLDEDCCQTQEELAKSLGVTQQAISKRLKAAGYIQKQGNWVPHELKPRDVERRFCMSEMLLQRHKKKSFLSRIITGDEK
WIHYDNSKRKKSYVKRGGRAKSTPKSNLHGAKVMLCIWWDQRGVLYYELLEPGQTITGDLYRTQLIRLKQALAEKRPEYA
KRHGAVIFHHDNARPHVALPVKNYLENSGWEVLPHPPYSPDLAPSDYHLFRSMQNDLAGKRFTSEQGIRKWLDSFLAAKP
AKFFEKGIHELSERWEKVIASDGQYFE
>Helentron1#RC/Helitron gi|34365516|tpg|DAA01284.1| TPA: replicase/helicase/endonuclease Helentron2 is 98% identical [Danio rerio]
MSDLDRVLEEGDALYVSVKMQLISERRFLNDHLSMEEIPSELTTFNRTYNVHKSEVKLGLLKAKGAPDMEDWFLPLAERL
QCLAADVTFALLIVSPECIALFRDGSGRYGFFDPHSRTAEGLPDKTGCGTAVMLTFTHLSDMTDKLLELFQDRRDGASYE
FMPVSFETEQWAGQQPLLSACAQFSQVISVLPEPEENVAVQNSGARENQALIAKKNKSRRRREMRKTIANLNCRESKDTT
ASYMMRKHKQRDDERYRYAACLQYRAAKKEAVWVKYQNAHFRNKKKDYSNMRYKDDIVQSKKKEFMARRYTTDPVVQSKK
KEYMARRYTKDPVVQSKKKEYMARRYTKDLVVQSKKKEYMARRYTTNPVVQSKKKEYMARRYTTDPIVQSKKKEYMARRY
TTDPIVQSKKKQYMARRYTIDPVAPLKRKEYMARRYRSDTIFQAKKKAHMVRRYCTDTAFQKKMKEYMVRRYADNSEFRE
HHILQCTLRKKQKFDTTSRILHQMQCALTIKRKYKMCIRPSLETVQPLVSKLMESAIHAFRCKIQQGPTYVCTVCHRVLF
LDQVKACDRSNYEKDVQLSSFCLTRKYVHTCDSACSDDCTVPEERRREWICHTCDSHLKRGSMPSIAAVNKLELPPIPAE
LAELNVLERQLIAKILPFAKIVALPKGQQRAVHGAVVCVPSEVENTVNSLPRPRSESQLLQVKLKRHVSFKGYQHFHTVN
MHSVIAALSKLKEVHSEYKDISIQEPEVSEDQFDEDIDAAEDNQEVGTAEHEEQHVSVEEKDELRPGLTLDTCMQPPDIA
HDILSYGEGIFSIAPAQGKKPVGFFKIPKLEAMAFPVQFPTGENTIDEARQTSVSPSMYFNVRLFCVDARFARDQTYLFF
AQFVTETQLARNSMSIQLRKGKPITKDGRRISNRMLQDSDEVERLVHNRDATRFMQPLRGSPAYWEKTLRDLQAMIRQLG
TPTFFCTFSAAEMRWPEIVTVIKAQQGEEIDFSQLDWATKCEILRSNPVTVMRMFEKRVDALMAHLLLSPAQPIGEVEDF
FYRVEFQARGSPHIHLLAWVKDAPDPEEDNDETICDFIDRYVSCKLPDPNVDPELHKIVTEVQLHSKNHSKSCKKGKVVC
RFGFPKLPMPKTMITHPMPERPDEGDDEPTDSAAKKKARRDAAKKAMNEAKSKLKPLWDLLNDPKSSLDNLSDLLTKCNL
SMDDYLNYAEGLTTGSAVLLKRDPKETWVNGYNPDLLRAWNANMDIQYILDAYSCIMYMLSYVSKPEHEMSGFLKNVIQS
VREANVNEEDEMKHIMQAYAKHRQVSAQESVARTCSLPLKKCSRSVVFVPTDDDALKMSLPISVLLNKNPESEDVWMSGL
IEKYRARPLTLEFEKMCLADFASNYRVVYGQQIKGKNVLRLLHDMGFIQKRTVGKPAVIRYARFSEEKQPEKFYGRMVKL
YVPHRHNEELKPEDFPTYQLFYKSGFVELPGHPGLRFPVCGIVKAYQQRYEKHGKVVDKAFEQLQQEGPSESAWTAFAPE
VEVDRLECIAEQEDVGPEEDDEQDEVPEFQPRNEDGDGVAPRIEAPQMSVEFVRKLFRSLNKTQAAIFYTIRQWCQNRVW
GLNPEQFFYFVSGGAGCGKSHVIKCVYTEATKILRQLPQLREDGDLSIPTVILSAFTGTAAFNISGKTLHSILKLPRNLK
PPYQGLGNSLDDVRAGLRHVEILIIDEISMISKDFFAYINWRFQQIRGSKKPFGGISVIVVGDFYQLPPPGKAKPLCVYE
EDVLDFWKDHFQIITLTEIMRQKEDLAFAQLLNRLRVKRKSDPLKEEDRSLLLQAVRNPQDCPRDALHIFATNKEVHSHN
SETVNALHADIITIHAEDYRKDPRTGGMKRQTKPVMGNKDDLLDTIQVAVGVRIMMIRNLDVEDGLVNGCFGNIRNIVTK
TRDGIAFVHMLGIQPDNPNAGQKYRRRLQGEQDTLVYIERSEEPVKKRAVRRQFPIKLAYACTAHKVQGMTMQSAVVSLK
RIFEPGMAYVALSRTTSLGGLYIRDFDEKKIYADPEITTSLERMKMATLEGIMPLFDWKKSNTSLVEKLIVVHHNTEGLQ
SHVEDIKHHHELLLCDIFCVTETHLSGSCISSHVQLEGFKMFARNRHASYSTLPEMAKKDCGGVAIYCKEDIQAEPRHFI
HHVTDLEFVVIKVDAPVTATIAAVYRPPDYSLEKFLPNIRGLLDYLEMMKENPIIVCGDFNEDHLSSGRKPILELFQSQQ
YQQLITMATTEKQTLLDHIYVSHPDLCMQSGVLHTYYSYHNPVYCVLPK
>MAR1_BM_tp#DNA/TcMar-Tc1 57-1185 (is: gi|1698453|gb|AAB47739.1| transposase ) [Bombyx mori]
MEWGDKENRIAVIALHKVGMEPNAIFKTLHTLGISKMFVYRAINRCNETSSVCDRKRSGRPRSVRTKKVVKAVRERIRRN
PVRKQKILSREMKIAPRTMSRILKDDLGLAAYKRRTGHFLTDNLKENRVVKSKQLLKRYAKGGHRKILFTDENFFTIEQH
FNKQNDRIYAQSSKEASQLVDRVQRGHYPTSVMVWWGISYEGVTEPYFCEKGIKTSAQVYQDTILEKVVKPLNNTMFNNQ
EWSFQQDSAPGHKARSTQSWLETNVSDFIRAEDWPSSSPDLNPLDYDLWSVLESTACSKRHDNLESLKQSVRLAVKIFPM
ERVRASIDNWPQRLKDCIAANGDHFE
>P_Dbi_tp#DNA/P gi|633843|gb|AAB31526.1| O-type P element protein {exons 0-3} [Drosophila bifasciata, Peptide Transposon Partial, 757 aa]
MNYCYFCRKNVPGVKIIHAPKCEMKRKLWEESLGCSLSKNSQICDTHFNASQWRTALKGKIYKKRRLNNDAVPQREKEDE
SVKEGYANASTETEDTVINHSTSMEIKTLRQKIRALEDEVQSLRKLVEDASQLEKSLSTIFTQTQIKILKSGGKRSEFNS
DDISWAMCLHTAGPRAYNHLYKKGFPLPCRATLYKWLSNVEIQTGCLDVVIDLMDNMDMDTADKLCVLAFDEMKVAGTFE
YDSSADLVYEPSEYVQLAMVRGLKKSWKQPVFFDYDTRMDVPTLYELIKKLHRRGYFVVSIVSDMGAGNQRLWRELGISE
EKTWFGHPEDEDLKIFVFSDAPHLIKLVRNHYLATGLHINGQTLTKSTVEQTITHCCKTDVTILFKVNESHLNVRSFAKQ
KVKLATQLFSNTTASAIRRCYSLGYQVENAVETSDLFKLLNDWFDVFNSKLSTSNCIETTQPYGKQLELQRDILKQMSHI
MSNRICGQTHRLPFQKGILINNASLDGLHAYCNEKYGMEYILTSRLNQDIVENFFGAMRAKGGQHDHPSPLQFKYRLRKY
IVAKNTELLAGNGNVDEDNCDSWLNLNITPNGNKENEPDEGKWKGWSKEFEEFEIEMDNNIAAEYIMDELTEDAMEYLAG
YVVRKLRLSNESTQSGFTYVDEVSHGGLIKPSDQFTATLKHLESIFINNIHNTIEITKDIKKKLLIAAKHVQIDNNVKQF
YFKTRIYFRLKYLNKKLAIKNQKQRLVGNSKLLKIKL
>GB:S20478 hypothetical protein (Mariner_Tc1-element) [Drosophila melanogaster]
MGKTKRVVGLTLKEKLQIIELVTNKVDKKEICAKFKCDRSTVNRILQKTNEIHEAVAASGLKRKRQRKGAHDLVEEALYI
WFGQQESKNVILDRHVILAKAKEFCQKFNDAFEPDASWLWRWRKRHNIKYGKIHGETATNDSVSANEYKNDILPGLLKGY
NPEDIFNADETALFYKAMPNATFFTCGKQLNGQKSQRVRLTLLFICNATGTYKKTFVIGRSKSPRCFKNANVPIPYYANK
KAWMTKDLWRKIMTGFDEEMKKQNRKILLFIDNATSHTTVKDFENIKLCFMPPNATALLQPLDQGIIHSFKLEYRRILVK
QQLIAVNCGKSTVEFLKSLSLLDALYFVNQGWKNVKMLTIQNCFKKAGFKFSFENEDTIAEKDKQCVEVDIVSNINWNEY
ANVDADEACHGQLDDDEIVRSLVQDAKTSDNEESHSDEDVDDTERPTFKDGFAAIKALKSIFMRNNNDEFLQNLNSMEDK
LFNLHINSAVLQKKITDYF
>gi|45708759|gb|AAH34479.1| (piggyBac) piggyBac transposase [Homo sapiens]
TPTEILELFLDDEVIELIVKYSNLYACSKGVHLGLTSSEFKCFLGIIFLSGYVSVPRRRMFWEQRTDVHNVLVSAAMRRD
RFETIFSNLHVADNANLDPVDKFSKLRPLISKLNERCMKFVPNETYFSFDEFMVPYFGRHGCKQFIRGKPIRFGYKFWCG
ATCLGYICWFQPYQGKNPNTKHEEYGVGASLVLQFSEALTEAHPGQYHFVFNNFFTSIALLDKLSSMGHQATGTVRKDHI
DKVPLESDVALKKKERGTFDYRIDGKGNIVCRWNDNSVVTVASSGAGIHPLCLVSRYSQKLKKKIQVQQPNMIKVYNQFM
GGVDRADENIDKYRASIRGKKWYSSPLLFCFELVLQNAWQLHKTYDEKPVDFLEFRRRVVCHYLE
>gi|28565640|gb|AAO43224.1| (piggyBac) piggyBac transposase [piggyBac helper plasmid pBlu-uTp]
DPLLCFKLFFTDEIISEIVKWTNAEISLKRRESMTGATFRDTNEDEIYAFFGILVMTAVRKDNHMSTDDLFDRSLSMVYV
SVMSRDRFDFLIRCLRMDDKSIRPTLRENDVFTPVRKIWDLFIHQCIQNYTPGAHLTIDEQLLGFRGRCPFRMYIPNKPS
KYGIKILMMCDSGTKYMINGMPYLGRGTQTNGVPLGEYYVKELSKPVHGSCRNITCDNWFTSIPLAKNLLQEPYKLTIVG
TVRSNKREIPEVLKNSRSRPVGTSMFCFDGPLTLVSYKPKPAKMVYLLSSCDEDASINESTGKPQMVMYYNQTKGGVDTL
DQMCSVMTCSRKTNRWPMALLYGMINIACINSFIIYSHNVSSKGEKVQSRKKFMRNLYMSLTS
>IS1601_Mav#DNA/MuLE-MuDR IS1601 gi|5524333|gb|AAD44226.1|AF143772_32 IS1601-A [Mycobacterium avium]
MTAPHIVDPAGLLGEALAEASPDLMRSLLQTVINALLSADADAVVGAEWGQPTPGRRAQRNGYRHRGLDTRVGTIDVAVP
KLRKGTYFPDWLLERRKRAESALITVVADCYLAGVSTRRMDKLVKTLGIDSLSKSQVSRMATDLDEHVEAFRHRPLDSAG
PFTFVAADALTMKVREGGRVVNGVVLLATGVNGDGHREVLGMRVVTSETGPAWNEFFADLVARGLAGVRLVTSDAHAGLR
EAIAANLPGAAWQRCRTHYAANLMSICPKSMWPAVKAMLHSVYDQPDAPAVAAQFDRLIDYVTDKLPAVADHLATAREDI
LAFTAFPKDVWSQIWSNNPAERLNKEIRRRTDAVGIFPNRDAIVRLVGAVLAEQNDEWAEGRRYLGLDILTRCRLTTITD
DNPDIGANDMPALTA
>IS3_tp#DNA/IS 311-1228 [Root]
MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPF
NVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVI
GWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVE
CIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA
>Soymar1_tp#DNA/TcMar-Stowaway gi|7488706|pir||T06335 probable transposase - soybean transposon mariner element Soymar1 Renamed Mariner-1_GM in RepBase [Glycine max]
MQRKVKMLSNEERITIYQLLLQKSVDGKLPQGVKESVASSFSVCRKTIDRIWKRAKESETHDVSHKKTKNSGRKRVEIDL
SQLREIPLSQRTTVRTLAVAMKTNTSAMYRLIQSGAIKRHSSAIKPQLTEEGKRLRLEFCLSMLEGIPHDPMFQSMYNII
HIDEKWFYMTKKSERYYLLPDEDKPHRSCKSKNFVPKVMFLTAVARPRFDSEKNVTFSGKIGIFLFVTQEPAKRTSVNRV
AGTMETKAITSINRDLIRSVFIEKVLPATKEVWPRDELGSTIFIQQDNARTHINPDDPEFVQAATQDGFDIRLMCQPPNS
PDFNVLDLGFFSAIQSLHYKEAPKTIDELVNAVVKSFENYCVVKSNFIFLSLQLCMIETMKAKGSNRYTSQHMQKEKLET
EEQLPIQLKCDPILVQETLDYLNNN
>Helentron5#RC/Helitron gi|34365522|tpg|DAA01288.1| TPA: replicase/helicase/endonuclease [Danio rerio]
MPRKKGFRMRRTPKSIKSKSDAKVCVCTETLQRPVVVGSDVRDAPLSCDVNSLTGYCAVAAIKHVIAPVCTWVQTDVDDI
CVEGSKLATYVAETSQKTDCREKELCTLIEQHNVFGRKWKLEIGLPEYRGFEMLEEEAVMYEKLQEYLLRDGMCFLNLNS
AISVIIHHNNYFVMADFGIRDMFGLASNIGTPVVVFNTCLNDLMVHIRNLRSSLDAQWYAVSSISVKAAQDDHDQQTSSS
VRCEGVSAGCKDATGCEDATSVSTENSLRGSFHQGNEQFKYRGVQCMAIALVSLAKHTVDSVFSWQSKDLDKVVVLGDEL
YTGLRETNRISHSSNLLCVPDLPKESNIDGESFLFEYGNFVSGDVDVVDGEFIESGAYSSLSSGLENMFSQYDRCLLTLC
SSTCAIISHNGQYALVDSHARSALGMVDGNGKSVVLYFSTLKDLFSHICLLSKGLSEKQKLFEIAGVHVTVRRMADSCKG
SDETFEMEFDEDSGRDLVVNNDARPKRNISASNSSSKKVKRFDVREVNSDVEFVRDIKKNNMMFSPICQHVCQTLCSRLK
VDCEKVNVPVFSHVGLLGVPCKNESIVADGNCFFRAISQAVIGTQKYHRKIRLAVVMHLEKNCEKYRNILRREYSSVSEY
INRSKMRFVNSWATEVEIQATADYLGIDVFTFYDGHWLKYSCSGKLISKHSIYLENCNENHYETVVCVNEPEVQSCYGYC
KISTCFTEGYSVRAKIMDKNNVLTLKNKKELIDRETLFMTGQQSHRMLKAMHNNTCCELGMVEDSNAKVVENSGQMTYNP
LSTEAAQTLCDKLHLNFEKENIQVPTVYGSLGVVCKTGKVVKDGNSFFRAVARFINGSEKSHRKIRLAVVKYMENQSKEH
SHLVGNEFASMSEYISKSQMQYVGQCASDIEFQCTANALDVNLFLFNGAQWVKYSCINTMKRSEGIYLKQCENNIFEPVI
CVHHVDKNDCFDLCKVGNLSDTQYMSRKNSNRQRIVTLNMHTSSKMVMGKSRYLDVLYKEKKNNACKIRYQKNVLYKKKK
RNASITKYCVNALHKEKVKNMSKRKYDQNALHKERVKNMSKRKYEQNALHKERVKNMSKRKYEQNALHKERVKNMSKRKY
EQNALHKERVKNMSKMKYEQNSLHKERVKNMSKMKYEQNALHKEKVKCMSRLKYQQNMLHKKTVKEMSKRKYKLNQLHRQ
NVIAINKKKYHENAEHKKRVKAGMKHKREQIKEKAKQFDFVMQRFLDLIKDGPDFVCCVCQRLLFRHQVLHCNRDYYNRK
AIGSIYDKCITEEYLHKCNSTCVMPCQWLDSPRGKLWICYTCHYKINKGEIPPECATNKLKVHPVPEELSCLNSLEQHLI
ALHIPFMKMLALPKGGQNGVHGPVTCVPANIVQTSNLLPLSSMEGSLLPVKLKRKLTYKGHYKYQYVDTMHIRQALKCLK
QINVHYKDVEFNEVWLNEFCREQDDDVIVQESDTHAESNEASLDNGEDELLHDRQQHCMFQDTCLMPVDIGQEALDQYFD
DIVNLAPAEGNNPVKLLSDFANEAKCFPVLFPLGCNTYRESRDKRLTLSRYFNNRILHADGRFAQNVEYIFFAQYMSEVE
QVVSNVSIALRKGISGCTSKKVNEDLLNNEESLKKLLEFDDGFRFLKPIRGTPAFWQTAQRDLLACVRQLGIPTWFCSFS
SADMRWNNLLYSILKQEGRTQTLEELQWADRCELLRRNPVTAARMFDFRWHCFLREVLMSASHPIGKIKDYFYRVEFQQR
GSPHVHCLFWIENAPVIDKNTDEEVIQFIDKYVTCELPSQDDSLLETVKTVQHHSKRHSKTCKKKNTVCRFNFPRPASSR
TFICRGKTNTKKKCKCKVDKKVDNLTKECACANEGRVEFKMKREQAGDILLAIKKALSDENCNFNNVEHLFKHLGINQAT
FERAYKTYSRNTQVVLKRQVNEVWVNQYSKPLLKCWNANLDIQYVVDAYACVVYIISYISKSEREIGLLLSNAQREARKD
GNVSAKEALKNLGSAYLHNRDVCAQESVYRLTNMHLKECSRKVVFVPTGDNIIKMSLPLNVLRNKAKSNSLTTKDMWMTS
ILDRYKNRPDDLNDICMATFASEYRILSKNEKSQSPLKLKNGCGFITKRTRTQPAVVRYVRFSEEKNPEAFFQSILQLFL
PYRVDLQLKPPNCNTFEEFYRNGHVTFNDGSSHSVKSVVDLNRKNFEMEADELEDVEDVINSTGVIEDGWCELCPEQELE
RLLCIDEMKDKLQQVEEHEEHIPDLASEANQKVAHLEKKNNIMCRRDGLALIRSLNDTQLSIFYEIRQWCLDKVMGKNPS
PVHLFITGGAGTGKSHLIKAIQYEAMRILSTVCRHPDNISVLLTAPTGIAAYNLHAATIHNTFSIGKDVRLPYTPLGEEK
LNCLRAKYCDLQILIIDEISMVDHNLLAYIHGRLRQIKQTGDFSPFGNTSIIAVGDFFQLPPVRGKPLYVDDMLGINLWS
SLFSIVELKTIVRQKDEKFAKLLNRIRIRTKMTPMLKTDIDILKKCETGEVSTALHIYPTNKQVNEHNLQQLFKSCPEHF
EIDAQDFVHNNKTGKLELKNGHHAKSFNTCLEETLFLGDGARVMLSKNVDVMDGLVNGVCGTVTHVVFPSNDNKFPQTVY
VKFDDIQVGAQRRKCPGYASAVEIGSVGIKPEEERVNNKGALRRQFPLKLAWACTVHKVQGISVDNAVVCLKKIFAPGQA
YVALSRVRSLSGLIIEDFEEKAIYCKDSIKDAIQSMSKFFIRNISYPKVNTQAFSIFLMNVQNLKQHLADLIFRTQHLQP
DCIAVTETWLPADTLSEAVHIDEYSFHSQPRSLSYHTTNPILTGLQTQQHGGVGIYASNKLLFNIIQIPNVNLECVVCNC
IKYNILTAVIYRPPTYPMSLFKENLGKLLDFLELINSTIVVLGDFNDNIFKSSTICKFMTERGFVQHVTQTTTEKDTLID
HVYVKTAHYNVEAIVLPTHFSDHEGILCSFTPNTFNVDEGEFDHLLD
>Mariner2_GT_tp#DNA/TcMar-Mariner 191-1287 Includes gi|887424|emb|CAA50801.1| mariner-1 protein  (old Gtmar1) [Girardia tigrina]
MEISEIRILMKYEFHRGATTRQAVGNINSVYPTQAVTQTTVAHWFKRFRSGDFDLSNQPRGRPEIKVDNDALKADVEADS
SQSALELASKFGVAKSTILIHLKQINKVKKLDKWVPHELKDEHKQQRLDACLSLLSRNKADPFLHRIMTCDEKWIMYDNR
KRSSQWLDPDEPPKHCPKRKVHQKKLMVTVWWSSYGVIHYDFMVPGTSITSDVYCSQLDDMMEKLAIKQPKMFNRLTPIL
LHDNARPHSAKNTVAKLQQLGLETLRHPTYSPDLAPTDCHFFQSLDNFLSGKNFTSSGAVKTAFQEFIDSRESVFYTKGL
NVLPLKWQQCVDNMGDILIKNKMLLFKKNRFTFYFNFDPFHIEQP
>Mariner-6_ADi_p2#DNA/TcMar-ISRm11 2255-3286 R [Acropora digitifera]
MALQVKVDYGGERFATFLLRNVTYKTLLQTIQRNCSPLAHLGQDSIRLRYKDEDGDFVNISPDDSFAFSEMLRTAKEVGD
RDYKKIYIKAHEVNSPVPQKMRRLDSGGLSTSAAFSGAELEPKQLTYSTLAPVSTSTAQTTNLCSTVAGEKSPLDLKEEE
LKENLTVLQVQLSTAREELNILKQQDKEFLSLSSIRARLCTFCHVAGHTKTTCKNEPCTNIRCCKVRDKHPEHRANIQEL
QRTIKNLEKQSADEEANIKGLSNARERAKSSFFAIMRPRLRVQNLIKYASGKRLQLDRDLLALQRALNNRVPEWGVEEDW
RLPQILEQFQNSQLKALMPHKDIS
>Helentron4#RC/Helitron gi|34365524|tpg|DAA01287.1| TPA: replicase/helicase/endonuclease [Danio rerio]
MPKKGKRSESQKQRRMREASFDNSSSSSSLSGMNDPNLHVLSVTASHCQSDVRYDSSSRNRQCTCNALMFLAVHNESNQL
KSADLDCVLQKGDAVYTSVKRSLQNKGQFVNDFLNFDELPNTIETNSRRYNIVKHPQRFGFLRDTPSLGEYQNLENTLQC
LKVDVSDALLLCGGSCIAVFRDRAGRFGYFDSHCRTPDGMYTGERTGTAVMLIFFHLKGMIEKLLKLFQECFQLSDQEQF
DLLPVSFIEDTEKYVHEEVPMKCRVLEREGKPCISFEKKALSNTEEYLLVQVQDPLQQSSDHSTSRSTSVSKQFNLNQQD
KMKDLTTVFGSQDRLKHKIPVSDFPHCMSTLLALNHNSQSTVKQMKKFDNTQKNVLSVTASHCQSDVRYDSSSRNRQCTC
NALMFLAVHNESNQLKSADLDCVLQKGDAVYTSVKRSLQNKGQFVNDFLNFDELPSTIETNSRRYNIVKHPQRFGFLRDT
PSLGEYQNLENTLQCLKVDVSDALLLCGGSCIAVFRDRAGRFGYFDSHCRTPDGMYTGERTGTAVMLIFFHLKGMIEKLL
KLFQECFQLSDQEQFDLLPVSFIEDTEKYVHKEVPMKCHVLESDVVNEQSHSTYQDKMNVLPTLTQNEGRLRLNVGKFSH
KVLSEGQLALSPANQKHPPMTIEQPKKLNKTQKRKFYCQKWRKAMAQRQDDYAKKQNASNVCNYKASSEYRQKHKQAMKN
NYWNNMIYREQHKKAMKSNYEINEKRERKKSNAISKYRNDEQFRKRKQCGVVTNYRNNEQFRKRQRNYIIQKYRTNEQFR
KRQINYTIQKYSTNEQFRERQINHIIQKYRTNEQFRKRQINHIIQKYRTNEQFRKRQINYIIQKYRANEQFRKKRRNYII
QNYRTNDQFRERQKNYIKINYRNNDKYKEHHMQYLVNRYLKDPVFRERQREHYKNRCINDPLFYEKRKRIFKQHYQCDAQ
FRARQNKYYLFKSKNKISELKALHKVHCAKDIQYKYKKMFLIHQQTDMLQNIQPDIDPVMVTALNIFRDVIKQGPTYVCT
CCARALFLNQVRRCNQQKYQKNPALVSLCLTANYDHTCSNCPDQCSLEDMTTQWICHCCHTTLLTGQMPDIAVVNKLQFI
PIPSELCNLNILERHVIAKYIPFAKIVTLPKGQQRAIKGAVISVPSEVETTVNNLPRPRNESQLLTVKLKRRLCYQGHYQ
FQTLNVHKVLSALKKLKEVHSEYKNISINAVLSEEEMFSEHEESRNSIGTTEDEINIEDGSQNQNNEEQSTENVQNEDSE
TTAEEQSRGLALDTCLQPPDLAQQLLSYDDGIFCIAPAERNTPISIFKVPKLESMAFPVQFPDGNNTFDEPHRAKHISPS
RYFNARLFSIDNRCARDTNYIFFAQFVTEMHIATSSMSIQLRKAKPMTRDGRRINCSLLQDKRELEKLVLNKEATRFMQP
LRGTPAYWEKTLRDLFAMLRQLGTPTFFCTFSAAEMRWPEVITAIKTQQRETVNFCDLDWSEKCEILRSNPVTAMRMFEK
RVEALMRDLIMSPAQPIGEVIDFFYRVEFQLRGSPHIHCLFWVKDAPEFEHDQDQVVCDFIDKYISCKLPDVNEDPELHR
IVSEVQMHSRNHSKSCRKNNKHCRFGFPKPPVNRTIITRPRPPPENQSNDQGESTEDNYPVNSKNAKAELQKVWDLLNDS
TKSFENITDLLNQVNMTYEDYENHIDALSKSSVIVMERQPQDCWVNGYNPLLLRAWNANMDIQFILNPYSCIMYMLSYIS
KAEHEMSDYLKTVIRGSSHDDLTDRECMKKVMNAYSKNREVSAQEAVARTCSLKLKSSSRAVIFIPTDDNAVKMSLPMKY
LQNMDDDVENVWMTGLPDKYKARPNRPEFENMCMAEFASEYRIVYAGQTKRKNVLPLQNKLGHIQKRTRGKPAVIRFARF
SEKKDPEKFYGTLLKLYLPYRTDRQLKCTKFPTYQTFYALASVKLPGSDEVQRVYNIVSKNREKYEKHNEDIERAIEDFE
KNGPIEDAWTTLAPTNELIRLESIMEREPIDPNEVNEQDDIPEYTASSSVSNTAMPLMEAAKLSTAQIRKMYQSLNQTQA
SIFYAVRDWCKRCISGEKPEQFLYFLNGGAGVGKSHVVKSIYAEASKILRRLPCMQENTDISKATVLLAAFTGTAAFNIS
GKTLHCLLKLPRSLKPPYQGLGNSLDEIRADLSNAHILIIDEISMVSKQLFAYVNWRLQQIKGNHKPFGGLSVLCVGDFY
QLPPLGRAKPLCVYEEHVLDFWKDHFQMITLTQIMRQREDLAYAELLNRLRIKQKHEKLTDADKCMLEAVIRSGPEECPS
DALHIYATNKEVDNHNTAVISSRFSEIITVYANDYKKDPRTGEMKRQGVPLKGDKRDLVDTLQIAIGVRVMLIRNIDVED
GLVNGTFGKVAKITTLSRDGVPFVHLIGLHLDDVNAGQKHRNKAPGDDNIVYIERLEEPLKRKGTIRRQFPMKLAFACTI
HKVQGMTTDSAVVSLKHIFEPGMAYVALSRTTTLSGLHIIDFNENKIFCDPEIRTSLESMPKADFCDFQPILHLLQDSNL
NSAIKIIHHNTEGLQCHMDDLKCHHELLLADILCLTESHLSGLCVPEYLQLDGYTMYMRNRHSSYTNYAYLANKNGGGVA
VYVKKIFQARPMMYIQNVTDLEYLVLKLEAPKQALIAVIYRPPSYRLSDFLLNLNGLLTSLEILNIKPVIVCGDFNEDQL
SHCNKPIMNLFYDKGYTQLISTGTTENNTLLDPVFINTTHSNVRAGVLQTYYSYHDPVYCILE
>RETROSOR1_SB#LTR/Gypsy 40-5673 [Sorghum bicolor]
MAGKRTSTTRPRGEPSRRGRPRRAVRSTYATVEGEGSEGEQPENEQPETRQEPPPAADPAQPSATQELQQLQAQLRNLQQ
ERDRIAAAYAASQEAAVTATQAAEIRQQLSLLQAEILSMQPPAQPTIQPAVLNSAGPTLDVQPTNYGGMLRGTLDLRSPL
SEGLQTSPWPTTYKPITLPKFSGKADPRQFLMSFEAAVASAGGNETVMAKSFVIAAEGDALAWYSMLRPGSIYSWENLRD
KILANFQGFAVESLTSTDLFQCRQNQGEALREYFQRFVQTKARAPGVPKEVAIEAAIKGLRIGPFAAHLAREKPASMHEL
YHEFEKYCRSDNDYRKRLEDQNSQKRQSNDRNSQKKDLSRDERRPQREAGGQMMNIEQPKNDRPENNRPPVEARSSERVP
NQAGRGGRNAGWRKNQSQRPRKQYCFFHGEEKGHSTRDCPDAKETQERIKSRSAPQPPIPVAQPREVNHTFPQTFYHSYV
GGSSQQHPAPLQPSALASAYYPSFLPAWRPAQQTADHNLPPNYVPPRPPHITYIETQSLPPPPNQLQLLQAPPPPKTEPH
PDNQIGPHTPLPTIGMILPIAGGSSMEFQTKKQKKDHLRLVNNVAVQGPVRCTDWSRTPITFTEEDLRLESYPHTDALVI
TTNVAGWGVSRILVDSGSSADIIFAGTFDQMKLSRSQLQPSESPLIGFGGKQIHALGKVALPVSFGTTENARTEYVTFDV
VDLHYPYNAIFGRGFLNKFNAAAHMGYLCMKIPALHGVITVHGSQKEARNIEKAIYKSFRNINSVDSTQHEASQPPDMPR
GKTNLADQEETKCIPLQEAVPDKKVTISATLSREEELELLDVLQKNQDIFAWSAADLQGVSRDIIEHSLDIDPRMRPKKQ
RQRKMSEERTLAAKAEVQRLLDAKVIREVIYPEWLANVVLVPKKNGKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAAG
CQRFSLLDCFSGYHQIWLKKEDEGKASFTTPFGTYCYTRMPEGLKNAGATFSRMMGKVLGSQLQRNIIAYVDDVVVMSKR
KEDHIKDLQETFVNLRSAGLKLNPEKCVFGVSKGKMLGYIISSEGIRANPDKTKAIMSMAEPSNKKEVQRLTGRIAALNR
FISRSAERSLPFFKVLREGKTEWGPEQSEAFRQLKNYIATNLLVTVPEPDTPLLLYVAASEHAVSGVLVHETSDTKGTVQ
RPVYYVSEALSGAKLNYTEIEKIAYAVLCASRKLKHYFQSHEIKVPTSQPLGDILRNKEASGRIGKWAAELSQFDITYVP
RTSIKSQALADFMADWTPSNKNEEKVIDQPWTLYTDGAWGQAGAGAAAVLIAPSGLKLKFAIRLEFKATNNIAEYEGLIL
GLNKAKASGAKTLVIKTDSQVVAGQVEKEYLAHNPELARYLAVVRGLERRFKGFTLQYIPRAENYEADELAKAAANNTPL
PEGTFHQIVTTPATETLPKAFRSVLLTESEDWRQAIADCLKGKTTVDDEATAKRMEARARNYTSIDGILYKKGVVQPLLK
CISQSEGRELLREIHSGMCGSHIGPRALSAKALRQGFYWPTHIRDAEEIVKTCKACQTFSPIQSGPSALTQLIPASWPLQ
RWGMDLVGPMPTAQGGNKFAVVAIEYFTRWIEAKPLTTITSETIRKFFWQNIVCRFGVPRLLTVDNGKQFDSDNFKEFCH
LIGTKIAFASVYHPESNGAVERANRTIFSAISKTLLNLRKGKWVEELPRVVWSHNTTVSRATGFTPFKLLYGEEAMLPEE
IKHQSLRSMKQQLAEDEEYCKETLESIRLEAVENITRYQQETKNWRDRKVVRKDIQNGDLVLRKKGDHPNAGKLQPKWEG
PYTAIQAGRSGSFYLKDLEGRTSTHTWNVDNLRRFYI
>BEL-9_Adi#LTR/Pao 56-5620 via tfasty with BEL-10_NV, 1 stopcodon. [Acropora digitifera]
MAEENAKENLERLKAIRAAHRGVITKKVQQAIEVLGDEGDALTDEDFQQLDVIKRLLDGKLKKLEEIDQNVLSLCTLETI
EHEIEESDKVSAKVVECQKKIQDAVQKHNERMNSLNTTVSSSPQQMFNQGMYSHNPFGASPPSANQVKAKLPKLTLPKFR
GDLTNWMSFWDSFESAVHKNPSISKVDKFNYLNSLLEGAARRAVQGLTLTEANYDSAVEILRERYGRPQQIISAHMDELI
KLQPSHNDRPASLRYIYDRISVHVRGLASLGISIEQYGSLLIPVVMSKLPNEIRLEVARNSTDEIWKIEDLLQTIKKEVE
ARETSEHVKTSEGSRKPPLGKPPIPSANSLVANKFGGNPVKCVYCKEYHYSASCERVKDPNKRKEILVKERRCLNCLRPG
HVVSVCKNTKVCRHCGELHHQSICPSLSSSRSDERPITSPPEQEVSNTTTTNTIRNKGTVLLQTAKAIAFNEDNSKSTYV
RILFDNGSQRSYVTSSLKSRLNLKPIKTETLHLNTFGGSTFRKQSCEVVKLRLRKNEGEEVEVTALNYPIICSPLPSKVE
VNYPHLEDLQLADSxNDKCGAIDVLIGSDYYWEIVGGETVRGDCGPTAVSSKFGWLLSGPLRDSVTSDTVTSNLIISGDC
PFASRENDELIRNLERFWETESIGIRETKEDIFPPKGEFVSVKHNGERYEIELPWKNDCLPIRDNYNLCYNRLKSMHYKL
NKTPEVLKEYDDIIQEQLRSGIIEKLPNPEVETRNKGVHYLPHHAVIRQNRETTKLRIVYDGSAKSEGQERSLNDCLPVG
PNYIPQLVDVLARFRWNRIAISADIEKAFLMISVHESHRDMLRFLWLKDPFLLNSEVVHLRFCRLVFGLRPSPSILGATL
THHLDSYKEHYPEIVKLIKNSLYVDDLLAGVSDVQEGFEVYQQSKELMAKGSFNLRKWNSNSSVLLQRINNEEGAVVQSN
KEEANQPIEEEDESFTKSTIGPNQVSDKLVKTLGVCWDTESDEMSFDFKELIEYANTLKVTKRSLLKLSAKVFDPLGLLS
QFTITMKCELQSLCLEKLDWDVELQGSHQRLWKNFVSSLMKLNNVRVPRCYFNSSLSPTNIQVHAFSDASKRAYAAAVYL
RSEYENGHVEVQLLCSKTRVAPIKQQTIPRLELLGATISARLVCNLLKSLPCEIEPTFWVDSTTVIFWIKQEKPWKQYVQ
NRVQEIRQIVPEATWNYCPGAKNPADLPSRGLSGEELVNNSVWWNGPEFLRNPDSEWPKSTQVKADNEEAMTELVRGPLN
ITHALVNTQERSTLVNFPAIIDPKNYSSLTKLLRISAYVLRFINKLKSNLSRSASKPVKELSTSEINEAEKYWIKSVQAS
NFGAELNFLTKNSQLSPLPRVKQFGLYKDDKGVLRCKGRLNNADIPTTSKNPILLPSKNDFVSLLIKDVHVKVKHNGVRD
TLTTLRENYWVLRGREATKRIVKECVICRKFEGVPFKPQSSPDLPDMRVADAPPFTYTGVDFAGPLYVTSLRDPQSSESV
SEKVYICLFTCASTRAVHLELTRDLGVNSFLQAFRRFSSRRGLPSTLISDNAKTFKASSKEIEKLVKSPEVQRYLSNSRV
TWKFIIEKAPWWGGFWERLIQSVKRSIKKTVGRTSLGYDELNTLVVEVESLINSRPLTYIYDDEEFISHPLTPSHLISGH
RISAMPNDEYFEIMSTHNTLTRRQRHHKQLLQQFSKQWKREYLLSLRENSTARSVSGNRTAITVGDIVILKNDSTSRAFW
KLGKVEQLIPGKDGKVRAAIVKVSSGNGKNQLLKRVIQHLIPIEVRSESNIPMPCPQSTPLQEPQPAGHINSVGQRPRRN
AAIQGELLRRGLLNI
>TV1_gag#LTR/Gypsy 486-1190 [Drosophila virilis]
MTMELSEQHLNQALSQLRQVPSFDGSTDQLNAFIKRIDYILHLYPTRDVRQHSILYGAIELQVTGDAQRISQRTAANTWQ
ELRNALIEEYKVQTPFEELLRRLYNTNYQGNVRKFIEELENKSFVILNKLALENIPSNTTLYTNAMNNTIKDVITKKLPD
RLFMMLARHDITSTQKLKQVAQREGLYENSVTEKPKNNNVQGNPNNNRRNMGNYQQNANPTTISSGYSNTNQSYHAQNKQ
HNKSEDNQKAHHEFPTEIKSR
>ZAM_pol#LTR/Gypsy 2323-5976 [Drosophila fruit fly genus]
NKLWATQHRRRKTHPTLPYQLKFSGTRLRNPTGYINPTTHATSLPYITLNLQQKFPLSFLIDTGSNNSFIDPESANQLEC
TILPTSTSITTALNSFKIEEKAIFPMPPEFKTEGQITLLKFKFHSYFNGLIGMDLLSHLEAKVDLVNLQLVTSKSTLPIF
LYTNQASKIFNIPAYSKVILPLPVKTNHGEFYCCTTQLNNELSLSEGLYKSNNNIANVEISNQSDSDKLLYLEYPLETIP
YNKNDHIELFNISATPLNNDTPQAPLHILTEHLNPEEKTALTTLCKQFRDIFYNPETPLTFTNKITHSIPTIDNTPIHTK
SYRYPFVHKTEVKKQIESMLDQQIIRSSHSPWSAPVWVVPKKLDGTGNRKWRLVIDYRKLNDKTISDRYPIPNINDILDS
IGKAKYFSTLDLTSGFHQIEMNPKDIAKTAFTVEGGHYEFTRMPFGLKNAPATFQRVMDSVLGDLNGTICLFYLDDIIIF
SPSLQKHLLDIKMVFEKLRAANFKLQPSKSEFLRKEIEFLGHIVTQDGVKPNPNKISAIKKFPCPTNRRAIKSFLGLLGY
YRKFIRDFARITKPMTKQLKGKRQVTTDKDFVDAFEQCKTLLSNDPILIHPDFEKPFILTTDASNFALGAVLSQGSLQND
RPVCFASRTLSDTEVNYSTIEKEMLAIIWAVKYFRPYIYGVKFTIVTDHKPLIWLMNFKEPNSKIIRWRLQLMEYNFEII
HKKGSQNVIADALSRADPNLNYNETLTVKPCPTSEKPINEFNTQLILEIDTNTSYQTTTPFKQKIRKKYSQPCFDFDNIV
KILKGTLKPNRICAFLADDNNSALIEKAFSTYFAHKKHFKIIRCKSLLHEIVGNPEQNKFIQEYHTNSNHRGIDETFLHL
KRETYFPNMKNKISELIRNCETCLKLKYDRQPQNIVFETPETPSKPLDIIHIDIYTINNNFNLTIIDKFSKFAAVYPIPN
RNGINCIKAIKNFFSQFGLPKKLIHDQGVEFCNDIFRKFCSQYNILLHVTSFQQSSSNSPVERLHSSLTEIYRIILDTRK
KHKLPTDHEEIMSETVITYNNAIHSTTKHTPFELFNGRTHLFEKTIIPNNEHDYLNKLNTFQDKLYSEIKEKLSTNTQQR
IEKLNTSRVEPTTVQPNSTIFRKENRRNKLTPRFSLHRTAKDKGKTLVTTRNQKIHKSKIRKISKPPNDLSLSTCIPDLA
MGHTNLSSSTTSIAPTS
>Helentron3_DR#RC/Helitron gi|34365520|tpg|DAA01286.1| TPA: replicase/helicase/endonuclease [Danio rerio]
MPKKGKRSEAQKQRRNAQASSDSRSNSSVLGMSVRSAYVHTVAASHCQSDRRYDEYSNGRQCTCNALMFLAVHNECNELK
SLGLDDILQKGDALYTSAKRTLQNKGQFVDNFLNFDELPTVIETSLQCYNILKRPQKFGFLRDRPALGEYENLENTLQCL
RTDVSDALMLCGGWCIAVFRDRSGRFGYFDSHCRAPDGMVADEGTGTAVMLTFFCLEDMIERLLLLFQGCLRLSNCEQFE
LLPLSFSNITAESCVSSKASLNNIVEPCVISGSSDNIPSVNQQCRSFDNISLDSSVSPSPFYCHDSQLTDENKISKKLNK
TQRERAYQKQHNNTANQKEIINYKASEEYREKHKQAMKNNYWTNVTFREKQKQAMKNSYEKSEKIRERKKIAGFANYRDN
KEKRKCNAKNKYKNDEQYRENKKCKAMNSYRHDEQYREKKKKYVIYNYKNNKQYRDRLKNYVIRNYRTNVKYKQQHMQYV
VNRYLNDPVFRQKQKKYYSNRCKDDLNFYEKRKKLFQQLYCSSQFRSRHKAYYLFKSQNKTAALKVFQKIQCAEQIQHKY
RLIDCVHQATENLGNSKPVKLKKTDLSRALDIFRHVIKQGPTYVCTCCGRALFSNQVRSCKHENYQNNPRVVSLCLTGNY
VHFCYDCPDQCAFENRNTEWICHCCHTTLKIGIMPDIALANNLQFTAIPPELSDLNILERHVIAKYIPFAKILALPKGQQ
RAIKGAVISVASDVESTVNNLPRPRSESQLLTVKLKRRLCYQGHYQFQTMNMHKVLSALQKLKQIHSEYNNIVINKELSA
EDILNDHGQPTNEPNVNDKPMDTDCSGPGENTGHQSNGNQHDSSGEPEPPTEQQHGLILDTCLQPPDLGQQLLSYDDGVF
CIAPAEGNSPVSIFKIPKLESMAFPVQFPDGKNTLDESDRAKHVSPSRYFNTRLFSIDNRCARDTSYIFFAQFVTEMHLA
KSSMSIQLRKAKPMTRDGRRINCSLLQDKQELEKLVNNKDATRFMQPLRGTPAYWEKTLRDLFAMLRQLGTPTFFCTFSA
AEMRWPEVITAIKAQQCETVNFSELDWSVKCEILRSNPVTAMRMFEKRVEALMRDLIMSPAQPIGEVIDFFYRVEFQQRG
SPHIHCLFWVKDAPEFETDQDQVVCDFIDKYISCKLPDPNRDSELHKIVTEVQMHSRNHSKSCKKYKKHCRFGFPKPPIK
RTMITRLRLAPAGQSDEETEAEERKKESIAKEQLQKVWDLLNDSTKSFESITQLLQETNMCYEDYETYIECMSKSNTIVM
ERRPQDCWVNGYNPLLLKAWNANMDIQFILNPYSCIMYILSYISKAEHEMSDYLKRVMKDSSHDNLSESECMKQVMNAYS
KNREVSAQEAVARTCSLKLKSSSRAVIFIPTDDNAVKMSLPMKYLQAMDDDVENVWMTGLPDKYKARPARPEFENLCMAE
FASEYRIVYGRQTKGKNVLPLQNNMGHIQKRTKGKPAVIRFARFSQQKHPEKFYGTLLKLYLPHRTDQQLRSTRFPTYVS
FYTLASVTLIGIDGLQRVCKIVNQNREKFEKHNEDLEKAIEDFEKNGPIEDAWTTLAPANELIRLESIMEHEPTDPNEVN
EQDDIPDYIVSRSVSNTAMPLVEAAQLNPAQIRKMYQSLNQTQASIFYGVRDWCKKCVSGENPQQFLYFLNGGAGVGKSH
LIKCIFAEATKILQRLPCMREHTDISKPTILLTAFTGTAAFNISGKTLHCLLKLPRSLKPPYQGLGNSLDEIRADFSNAH
ILIIDEISMVSKQLFAYVNWRLQQIKGNQKPFGGMSVLVVGDFQQLPPLGRAKPLCVYEGHIPDFWKNNFQMITLTQIMR
QRDDFAYAELLNRLRVKQKHEKLTDTDKHMLESVIRSSLEECPSDALHIYATNKEVDNHNTAAIQSRFSDIIIINANDYK
KDPRTGEMKRQAAPFKGDRGDLIDTLQIAVGARVMLTRNIDVEDGLVNGTFGKVAKVTTHNRDGATFVKLIGLHLDNVNA
GQKHRNKVPNGDDSIVYIERSEEPLKRKGTVRRQFPMKLAFACTIHKVQGMTTDCAVVSLKNIFEPGMAYVALSRTTSLT
GLHVTDFDEKKIFCNPEIGASLETMPTVDFHSVQPLLHVLQDPNLISALKIVHHNTEGLQCHIEDLKCHHELLLADVLCL
TETHLSGSVVPEHLNLDGYIIYNRNRQASYTNYAHLANRSGGGVALYVKNSLQVRPLMYVQNVTDLEYLVLKIEAPSKAL
LTVIYRPPNYNLTDFLTNLNGLLTSLEIMDFTPVIVCGDFNEDQLSHTNKPILKLFQDKGYTQLICSGTTENNTLLDPVF
ISSSHSQVRAGVMQTYYSYHDPVYCVIEQGHLC
>Skippy_gag#LTR/Gypsy 55-2616 [Fusarium oxysporum]
MSANVNPVQQQNAAANLQGHQPAAPANPAPVNRPPTDQNMDDADDSSQSSDDSEVERLREQLGNVTNEMNEMRQMLEEFT
ALQHQQNQSNNNTQQEMYNLASAANNGRDPGEVLKPSPPEYFDGTPSKLPTFLTQSRAFITYYPNQFRNDSAKVMYMAGR
LIKTAAQWFQPIMNDYMTNPPYKLQPRTALLFGENGRHEMEEALKMAFGTIDEKGQAERKIKTLKQTGSASTLGVEFLQL
ASKLPWDQDVLMSFFFDALKEQVQQELWEKDRPRTLVEYINMAVKIDDRQFAWRTRNSRGNKGRQDNKPRYHANQGRTRQ
TDTSYGTEAGPMAIGMTKRDKSKVTCYNCGKKGHYERECKNPVKTNQKYRPVPEGKKINMVKKNEEPQMAIKTINMTRKD
GYDMTQAKYINNFDPTLDVHDPFLSKEETLEKYYSKLEPEQRPVLGHTAPTTEVLYSRSKEEKREKRNNREQKKRQQAKK
DKTIELEWVPVPEHNQQPTKGKSIFMVRKGKEIAPKTDNEPSTKEVNQEIDNIPVKVTSRRPNRHTNDPNYLESCRVQRE
SDARKLRNKNEKTIWNTPIVPQYDEFNQRFWTNKHQKYTELARERAITEQDDDIYIRAYTKEMLEDPTTPEERMQAEKDL
RRYPNHPNHKQISWVSCTRHYCSRHQQDKIANDCFPVQVPEHQEQKPYLIIDTVGYRVTKKYRGSQVAKLEAHTETRERA
LAHIQNSRHVSQWRQRVQQEVEIAEDETLDQELSQINQDITRWEGELSQDEQDILRQLDKQQLQERLIQTEEEKGRPLTE
GEKADIILDHEVGKMEAAYQQKLATQNECPDDINCTKSECSMDHPWGKGTRHL
>Lu-P1_tp#DNA/P gi|422516|pir||A46361 P element homolog (Lu-P1 element) - greenbottle fly [Lucilia cuprina]
MRSQHKRKSRIVIKILYIRSPKPWWAHEVHIQSGTIKTNFLRILFFRMPSDINMETDECLFLSRPSPSWTSNVDPSVPSA
VLTESFPTEYTKTYVNQETQTEPDIFAAESAKYVDKIRELERENKELNFRLKMQVHNSNMALHGVNKIFTEGQIRKLEGC
KKIVWKSPDISSAICLHAAGPRAYNHLKKGFPLPHVSTLQRWCQKVDVHEGLLKTSLGFMQQATYLSQDEKICVLAFDEM
KVAETFEYDCTNDVVRQPAKYVQVVMARGLKKSWKQPVFYDFDCRMSKQILDSIISELSKAGFPVLAIVCDMGPTNRKLW
SDLGATTEKPWFPHPVNTEEKVYTFVDAPHLLKLIRNHYIDTGLIYNGEHLTSRTIADVLQHTNKCDTSITFKLSDEHLL
VKGAGRQKVKLAAQLFSNTTASAIRRCYTHGKDIYKPLETAELIQTVNNWFDVVNSSMNTFGLPGKEPYGVDLESQQNKL
EQMNQLMAVPIIPGRKSLEPFQKGILMTNRALVMLYDDVKKYDMTYILTNRLNQDVLEHFFGAIRSKGGLNDHPSPQDFK
FRLRKYILARNTEYLNGTGNVENDNTEWLNSTNFTITSLAKVDEVSEEIHLDCQAPISIHAPTEEQFLDLDETDLDDIGI
LQEDALEYISGYIIRKHNLEEYQCRENTFTWVDEVSKGSLKKPSNFFLQKIKSLEVVFYNVNGREISHRTNLRQHLLNES
SYVDLPERIKQFFFRCRIFFRIRNLNKHIKVQKQVLMGKKKMIKTIL
>Bmmar1_tp#DNA/TcMar-Mariner gi|2627179|dbj|BAA23532.1| transposase [Bombyx mori]
MENMKYRYIYEYQFYRGTSAAETTQRINDVYGAGVAKESTVRFWFQRFRSGNFDLQNQPRGRPETKVKNEELKAIVEADQ
SQSTSEIVAGFGVSDKTVLIHLKQIGKVKKLERWVPHELSESNLQTRIDCCVTLLNRHYNEGILNRINTCDEKGVLYDNR
KRLSQWLNPGDPAKSYPKRKLTQKKLLVSVWWTSIASVVHYSFLKSGQTITADIYCQQLQTMKEELAAKQPRLVNRSRPL
LLHDNARPHTAQQTTTKLDELQLACLRHPPYSDLAPIDYHFFLNLDNFLQKKINSDAAVQTAFKEFIDSRYHGFFSKGIN
ELPKRLQKCIDNNGAYFD
>Bgmar1_tp#DNA/TcMar-Mariner gi|13811431|gb|AAK40118.1| mariner-like transposase [Blattella germanica]
MSSFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKKCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL
LDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWI
FFVSPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKRGETVNTARYQQQLINLNRALQRKRPEYQKR
QHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDE
FYWRGIHKLPERWEKCVASDGKYLE
>Tc1a_HC_tp#DNA/TcMar-Tc1 286-1317 (was Tc1-2_HC) gi|4959263|gb|AAD34306.1|AF099908_1 transposase homolog [Haemonchus contortus]
MARHTGIRNLRQDQVDAIIRSFHAGLTSRQVSEIQGVTIRCVQRIWKKYKDTGSVEVKKHPGAARTTSRLVDRNIVRLAR
NDPRLTAAEILREISTPEGSNLSLSTVQRRLREAGLFGRRPAKKPLISAKNRKARLDWAQAHKNWTVRQWRKVIWSDESK
FLLFGTDGIKFVRRPVGTRYHPSYQLPTVKGGGDSVMVHGSFCGKGAGPLHRIEGKMDAKMYLNIMETVIWPFVRSTARR
GFIFQQDNDPKHKSKLLTKWFRDNNVPLLMWPSLSPDLNATENLWERLKHQVKGLRARNEHEKFNQLKTAWENIPQEEID
KLIESMPCRCQAVIDARGHATKY
>CCmar1_tp#DNA/TcMar-Mariner not in repbase gi|1399036|gb|AAB17945.1| mariner transposase [Ceratitis capitata]
MDNEKDHMLYEFRKGKTVGAATKDIREVYSDRAPALRTVKKWFAKFRSGDFNLEDRPRSGRPCELDNDVLRISVANNSRI
STKEVASELNVNKPTAFRRLKKVGYTLKLDKWVPHQLSEKNKVDRMSTAISLLRRVKNEPFLDRLLTGDEKWILYNNVQR
KRTWKQAHEGAEPMSKGGLHPMMVLLCIWWDIRGVIYFELLPAGETITANKYCQQLVELKKAIDEKRPIFANRKGVLFHY
DNARPHVAKPTLAKLKEMNWEIMPHSPYSPDIAPSDYHLFRSLQNNLNGKKFKNVEDVKSHLDNFFNEKPRDFYESGIRK
LVERWEWIAEHDGEYIID
>S_DM_tp#DNA/TcMar-Tc1 401-1441  [Drosophila fruit fly genus]
MPGKRLAFEVTQLIYYNHQLGKSIPELVEIFSVSRKTVYNILNRXXKEGRLEPKSGGGCKTKINKRVDRLIMRKAIANPR
ISVRSLAQDIREECHLTVSHETVRQVILRHRYSSRVARKKPLLSEINIEKRHSFAVSMMDHAEEYWDDVIFCDETKMMLF
YNDGPSRVWRKPLSALETQNIIPTIKFGKLSVMIWGCISSHGVGKLAFIESTMNAVQYLDILKTNLKASAEKFGLFSNNK
PNFKFYQDNDPKHKEYNVRNWLLYNCGKVIDTPPQSPDLNPIENLWAYLKKKVAKRGPKTRQQLMAAIIEEWEKIPLEYD
LKKLIHSMKKRLQLVAKANGGHTKY
>R1_Ele4_pol#LINE/R1 2663-5668  [Aedes aegypti]
MSGHKRSIKAAKTEVTQLNLNHCDAAQQLLWQSVSETKTDVVLLSDPYRIPANNGNWVADRSQQLAAIGTTGRYPIQEVV
SSSNDGFAIAKINGVFYCSCYAPPRWSIEEFSHMVDRMMAELANRQPVVIAGDFNAWAVEWGSRCTNQRGQLLLESLAAL
NVELANVGTVSTFRRNGAESIIDVTFCSPNLLGTMNWRVDDGYTHSDHQSIRYSIIPGGQKAARCNSTQARGWKTARFDG
EVFTEALRRERNTLDLNGEELVAMISRACDASMPRKAPPRENRPPVYWWCESIANLRAICLRARRRMQRARTEAQREERG
AAFREAKLALKKEIKSRKRACFESLCESANSSPWGDAYRVVMAKTKGAIAPQEKSPELLRSIIDVLFPHHPISPWPPAPY
AADEGEEVARVTNEELAEVVKSFASNKAPGPDGIPNVALKAAVNTDPDMFRTTMQRCIDQGIFPDVWKRQKLVLLPKAGK
PPGDPSAYRPICLLDTTGKLLERLILNRLVPYTESADGLSNNQFGFRKGKSTLDAIQSVVQTAEVAIEHKRSGIRYCAVV
TLDVKNAFNSASWEAIAHALHRLKVPVQLCKLLESYFDGRILLYDTEEGQKSVRITAGVPQGSILGPLLWNAMYDDVLRL
PLPTGVKIVGFADDITLVVYGESMEEVELTAAHSISLVEEWMKSRKLGLARHKTEVVVVNNRKSEQRALISVGDCTIESK
RSLRHLGVMIDDKLSFASHVEYACKRASTAIAALSRMMSNSSAVIASKRKLLASVALSILRYGGPIWSKALRTNRNLKRL
ESTYRIMCLRVASAYRTVSKEAVCIIAGMTPIGLIIKEDVQCFNQRGTRGVRDTCKEETLRSWQQEWDNSTKGRWTHRLI
PNVSDWYGRSHGEVNFHLTQFLSGHGCYRQYLHRFGHSESPACPNCAGVEETAEHVVFDCPRFIVVRGRMLTTCGGDTSP
DNIIERMCADAECWNAVTTAVTHIMLELQRLWRADQELAAED
>R1_Ele4_gag#LINE/R1 1170-2705  [Aedes aegypti]
MINQNKQLAECEGEASGPISNRLRFPPRKEATNFIENSVGKSLDTVTTAGTGRSSATCVVTDGPGLIEAMDRNREYLPKM
QVAAEQLDVIIEYVKSKTNISKDLKTSLLKLRQSVLAAKQDYEKAKEQLGKVEGQKDTRSCQTEVFSFTGNANISDDIIR
YAMRKREASGDEYVAKRRMVAKGKVTYAAVLQSGKAGTSQAPRSRGHGNKGEANTNPKAKKAKKKEPRVNRNQAVHPQEP
RAQGNSNPWIRVGNKKKQRKPKTEPKESAKPKTAKRRNLGEALVIKTEEAKYAEVLKAMRSTEKLSPLGADVRSIRRTRI
GEMILVLKKDAKEKGAVYKQLAQEVLGDEVDVRSLTAEATLQCKNLDEVTDAAEVSAALKEQCDIDVASKAIHLRKGPQG
TQVAAIRLPVAEANKAKNLGILKVGWSVCRLSIQQPPEVCFKCFGKGHKSWNCNGPDRSKMCRKCGAEGHRASDCKQIAK
CLICVDRADNGHLTGGPKCPGTSGVSKQPKRK
>Bilbo_gag#LINE/LOA 456-1865 [Drosophila fruit fly genus]
RRALPGWTVPLLCSSWEPYGEIIKYCKQNQKRERHSPNACREKSQAGEGSGPKAGPIRSDAGKTCTVKDAGMNPGGSHPK
PGMGGKSTPKTDTMVGQLSNIAAAQPSGEAAGEDLPSTSVQAKKYSYAEKRSAGHILRRQNASQEVSPTADWLKKVEWAS
TVLPNFSVEPQKVAAQQKRQRSQETPGPAAKRSRILPNVSFAQIAKERTLIGVLDKGSAEGKIPRSQWKWVEAALADRCF
ELLEKDPGPPPVCKDMGWFQGNIKVVACEDERSVKLYKAAVAQIGEVYAGAKLVAVDWSEVPSRPRARIWVPATFKEPER
ILTMLQRCNPTLPTSDWKVAKVEASKGPTNQAVVILNKESLAPIEAARGELNFGFSSVTMKVYKSDAAAEARSANKPVEQ
DVASEIEAPEVDPEPEPALESYSSETELLLDFEAMCRDDILDDSDADITVVENVSNEVSEASADKSPPL
>R1_Ele7_pol#LINE/R1 813-3372 via tfasty with WaldoAg2_pol, 4 frameshifts and 1 stopcodon. [Aedes aegypti]
METTIKRVASNAQQLLWQSTTENXCDVAIIAEPYQVPPDNGNWVADRTGTAAIHVMGRFPIQEVVDNSGEGFVIAKINGV
DVCSCYAPPRWTVEQFSQMVDQLTDKLIGRKPILIAGDFNAWAVVWGSRVTNARGYILQEALAKLDVRLCNEGSVSTFRR
NGRESIIDVTFCSPALSANMNxEFVRGTPSDHLAIRYRIGQRNPAPTMGRITSERKWKTKAFNEELFVEALRQDGDNEDI
DATELTQDGNACDATMPRKLEPRNKRRPAYWWNDTLSTLRTACLRARRRAQRAGTEMERRERRTAFREARTALKREIKLS
KSNCYKELCRDADTNPWGNAYRVVMAKIKGPSTPAEMCPDKLKLIVEGLFPKHDPTSWPPTPYGEDAEAIAEERQVSNDE
LVEAAKRLKSKKAPGPDGIPNVALKAAILAYPDMFRKVLQKCLDEGNFPGIWKIQKLVLLPKPGKPLGDPASFRPICLLD
TLGKLLERIILNRLTKCTESERGLSQMQFGFRKGLSTVDAIRAVLECAEKASKQKRRGDRYCAVVTIDVKNAFNSASWEV
PDYLCKILKSYFQSRILVYETNEGQKSMQVTAGVPQGSILGPTLWNGMYDGVLTLRLPRKVKIVGFADDVSLTVMGETLE
EVEMSVMETIDAIEGWMSGVKLQIAHHKTEVLLVSNCKAVQQMEVNVGRYVIAPKRVLKHLGVMIDDRLNFNSHVDYACE
KSEKAMNAIGRIMPNLGGPSSSTRRLLANVSSSILRYGVPAWGKALETKRNREKLNRAFRLMAVRVASAYRTISSDAVCV
IAGMIPCITLAEDIECYQRRDVRNVRKMARVGSMARWQHEWDCAEKGRWTHRL
>SART1_gag#LINE/R1 gi|2055275|dbj|BAA19775.1| Gag protein [Bombyx mori]
MSSYKEELPQEGTSRSAGGESLRAAERSAARCPSSSGGGNNCSKRSVKDGGRVSAKDGENKERRGGSVKDNEAANVLSDD
SMATASSSRSSLTGSRRKRLKGSSTECSESSSGEETACSARRAASKTPSKRGRGRPPTTGQYVGLAAAKEAYVKAQREEL
ALREREVTESVRKLRVREDAVAGSTGEPALDPERRLDESAKLAVAIAAKSGNLKGTYVRALKEMAAAIREAKEDMAARTT
DGETKRLQELCRRQEAEILHLKNAIADMRSEMARLAQAVGSPAAVPAPVPAPAPIQRSDDEEERRLQRIMRAVGTMLDAR
LSGLEARLPPEPRMRPPLAADHRRSRGQEKTPTPPTAAESMPTPGPTAAVATAAPNGGGPQKKKAPKSRQQPAQPEPRTF
PPAPAALTEAWTTVARRGAKPRTATATGTVSAPPPLKEKKKRLRPPRSQAVIVKLQPEAVERGVTYRAVLAEARAKIDTA
ELGIPIQRIRSAVTGAKVLVVDGADQNEKADLLAEKLREVLPSDSIVVSRPTITAAVRLSGLDESISREELVAEVARIGE
CPPDIVKVGEIKMGPGGTGQVLVRCPIAGVKKILAVNKLRIGWSVLRVQLLEARRLQCYRCHALGHVSARCPSSVDRSGE
CYRCGQTGHKSAGCALTPHCTICAGAGRPAAHVSGGKACAKPPKQRQQRSSAAEEKRRSQPGTATATPMDDE
>SIRE1_env#LTR/Copia 4790-6760 [Glycine max]
QLLLSERVQTLIARSLLGQNKFDRCFTRPSTFLIQTYIFVVISFSFTNTSQIFTKPFQKLCFSMATSPKETSSPVSPSVP
SPPSSTKAPSNQEQPEFNIQPIQMIPGPAPVPEKLVPKRQQGVKISENPSLATSPREVDTEMDKKIRSIVSSILKNASVP
DADKDVPTSSTPNAEVLSSSSKEKSTEEEDQATEETPAPRAPEPAPGDLIDLEEVESDEEPIVKKLALGIAERLQSRKGK
TPITRSGRIKTIAQKKSTPITPTTSRWSKVAIPSKKRKEISSSDSDDDVELDVPDIKRAKKSGKKVPGNVPDAPLDNISF
HSIGNVERWKFVYQRRLALERELGRDALDCKEIMDLIKAAGLLKTVTKLGDCYESLVREFIVNIPSDITNRKSDEYQTVF
VRGKGIRFSPAVINKYLGRPTEGVVDIAVSEHQIAKEITAKQVQHWPKKGKLSAGKLSVKYAILHRIGTANWVPTNHTST
VATGLGKFLYAVGTKSKFNFGNYIFDQTVKHSESFAVKLPIAFPTVLCGIMLSQHPNILNNIDSVKKRESALSLHYKLFE
GTHVPDIVSTSGKAAASGAVTKDALIAELKDTCKVLEATIKATTEKKMELERLIKRLSDSGIDDGEAAEEEEEAAEEEED
AAEDTESDDDDSDATP
>RETROFIT#LTR/Copia 49-4386 [Oryza longistaminata]
MASSSSSSGAAAANLLQGHSVSEKLGKANHALWKAQVSAAVRGARLLGYLNGDIKAPDAELSVTIDGKTTTKPNPAFEDW
EANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRSIEALYSTGTRARAVNTRLALTNTKKGTMKIAEYVAKMRALGDEMA
AGGHPLDEEDLVQYIIAGLNEDFSPIVSNLCNKSDPITVGELYSQLVNFETLLDLYRSTGQGGAAFVANRGRGGGGGGRG
NNNNSGGGGGRSAPGGRGSGSQGRGGRGRGTGGQDRRPTCQVCFKRGHTAADCWYRFDEDYVADEKLVAAATNSYGIDTN
WYIDTGATDHITGELEKLTTKEKYNGGEQIHTASGAGMDISHIGHTIVHTPSRNIHLNNVLYVPQAKKNLISASQLAADN
SAFLELHSKFFSIKDQVTRDVLLEGKCRHGLYPIPKFFGRSTNKQALGAAKLSLSRWHSRLGHPSLPIVKQVISRNNLPC
SVESVNQSVCNACQEAKSHQLPYIRSTSVSQFPLELVFSDVWGPAPESVGRNKYYVSFIDDFSKFTWIYLLKYKSEVFEK
FKEFQALVERMFDRKIIAMQTDWRGGRYQKLNSFFAQIGLIIMCHVLTLIRQNGSAERKHRHIVEVGLSLLSYASMPLKF
WDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCL
DVSSGRVYISRDVVFDENVFPFSTLHSNAGARLRSEILLLPSPLTNYNTASAGGTHVVAPVANTPLPSDNLISNAADVTS
GENSAAHEQEMENEQEIENVMHGNDVHGDAASGPVLDQPTADSSTAPDQGADTSDAVSGAASDAGGDTATLGAGAANSAA
AGGEESQPVQPDVTGTVLATVAPASRPHTRLRSGIRKEKVYTDGTVKYGCFSSTGEPQNDKEALGDKNWRDAMETEYNAL
IKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWS
LRQLDVQNAFLHGFLEEEVYMQQPPGFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNK
GGILMFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRVNMSNCKP
VSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLG
LHIHKSASTLVHGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKEL
GIESPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSACLLENFKHNL
NLARL
>R1_Ele1_pol#LINE/R1 1833-4808  [Aedes aegypti]
VQVTQLNLNHCDAAQQLLYQAVAEWGTDIAIISDPYRVPAGNGNWVVDGSGKMAAIWTTGKYPVQELVSTTYEGFVIAKV
NGVLFCSCYAPPSWSTERFTQMLDCMTTVLTGRRPVVIAGDFNAWAVEWGSRITNQRGQILLEALAVLDVDLANVGTKST
FSRNGAESIIDVTFCSPGLTSSSNWRVDNAYTHSDHLAVRYSIDYNNSRQRVEEAARSRPSPRRWKTSYFNDEVLREALR
RERNLLGLSGDELVAVLSRACDATMPRKVHPRNGRPPTYWWTQAIANLRRACLRARRRMQRARTEQEREERRAVFTAAKV
ALKSEIRASKKACFERLCQSANANPWGDAYRIVMAKTRGAIAPTEQSPQMLEGIIEGLFPRHNPSPWPPFVGQPGIGAGD
EDRVTDEELVGIAKSLSMGKAPGPDGVPNLALKVAILEAPGMFRSAMQICLDEGVFPDAWKRQSLVLLPKAGKPPGDPSA
YRPICLIDTAGKVLEKIILNRLLRYTESVNGLSSNQFGFRKGKSTVDAILTVKKTAEIALQRKRRGIRYCAVVTLDVRNA
FNSASWAAIADALLRLGIPEYLYKILGSYFQNRVLVYDTEVGRKCFHITSGVPQGSILGPVLWNVMYDEVLRLKFPAGVV
IVGFADDITLEVYGESIEEVELTAAHSIAIVEEWMSSRKLELAHHKTEAVVVNNRKSVQQAVISVGDCTITSKRSVKHLG
VMIDDKLTFGSHVDYACKRASTAIVALSRMMSNSSAVYASKRKLLASVASSILRYGGPAWGTALSTKSYRSKLESTYRLM
CLRVASAYRTVSHDALCVITGMVPIGILIMEDIECFEMRGTRGIRRTARLASMVKWQRAWDSSTKGVWTHRLIPRLDIWV
NRRHGELTFHLTQVLSGHGCFRQYLHRFGHAGSPECPVCAGLEETAEHVLFVCPRFRTMRDRMLATCGRDTTPDNLVQRM
CEDEFGWNAVSSAITHIVSELQRRWRVDSRSG
>Athila_gag#LTR/Gypsy 193-2997 [Arabidopsis]
MHTRSQGNQNLLFNDNIDRIARQLREQTETDTMADVVDEQEQPTNIGAGDFPHNHNQRHGIVPPPVQNNNFEIKSGLIAM
VQGNKFHGLLMEDPLDHLDEFERLCRLTKINGVSEDGFKLRLFPFSLGDKAHLWEKTLPHGSITTWDDCKKAFLAKFFSN
SRTARLRNEISGFTQKQNESFCEAWERFKGYPTKCPHHGFKEASLLSTLYRGVLPKIRMLLDTASNGNFLNKDVEDGWEL
VENLAQSDGNYNEDYDRSICTSTESDDKHRREIKALHDKIDKLLQVQQKHVHFASEDEVFQIQEGENDQGAEISYVQNQG
GSNKGYNNYRPNPNLSYRSTNVANPQDQVYLQQQLQQNQPKPFVTYNQSLGFVPKQQFQGGYQQQQPPPGFTPQQHQASA
PQESDIKNMLQQIMQGQAAGVMESAKKIADLNNKVDRQFNELSSRLESLNTRVRYLDGVTTSPPVTNNPGQLPGKAIQNP
KEYATAHAITIRHERELPTQHVSTSNTEDSVIQEGEASTQIEVSVAEIDYSAQPFFQAQSDLEEKAAIIERMVKRFKPAP
SPSLALPWTFRKAWKSRYESLAEKQLGEMEAVMPLVEVLKLISDPHKDVRNLILERLNIYQDSDDEDDVIMHQAAGERII
QEKLEDPGSFTLPCSIRQLTFNNCLCDLGASVSLMPLSVARKLGFIQYKPCDITLILADRTSRRPFSILENVPVMIDGVE
VPTDFVVLEMDEESKDPLILGRPFLASVGAVIDVRYGKIDLNLGRHVKLQFDINKFPTRPPIEGKTLEVQRADPSEGLEI
KRGKEQISVQTPPSNSTTRSSIPSSLDWLELKRKTDLQNRTIQKLSYTVEKLRDKLSRMQKEVQPQLNHDTISRKEITWD
WSEEKDYPPEEEAAYYEERRIEYSAVQLSREDAEYDDDISEEEDFSSSLCHIFST
>CER1_gagpol#LTR/Gypsy 730-7548 [Caenorhabditis elegans]
MEVNEGQDTEGGSSRAQTLTPPPNPQQQLYDEEDLLRESMDTTEKTFENGFQVRKAEHEVKKKDVIKHIQNYAKANEAQT
ALMVEPFIKIIKEEEDIIEIREKSIMMLKKVVNEQGITISDLQIQKEQIRQHLQDSSQRGTAEDAETQKMKQFLDTNELH
NVSDLEEIIKEYSVLKMKEEKEKQCLQMASDSWAMMREEIMEKRETNRDLNRQLKEKSEELMQKSQILVETTLKLKAVEE
ERDKRKKEEQFREADARSNNYARKGEISSNIEQKNHQNIQIMDTRCTTSSSRMNTPAQRIGENLSTSNVGNNVVRETVRE
YCEETGEILEDFEVNQNDSVLTERNVTGSVRNGDSQVQTNSLERMTQMMLAQSLPEPAKFTAEEGSISIEAFEKTFKLKF
GTFSDEQQVAILESKYLEGRAQKAYRSLTAGEKVKVKVVLNALANRLRLSVEDENHRAKQKWNILSRKPDQSCEDYCLLI
DDIARIAFRRVSPEELSSMKYVKLLDEVTDMHLRCSIDNKIMDTDEINHYDVCREMIIRHEWNVSKINEKQCLNSKLSEK
RGKVQNAENFVNQNTQNNFKPFSPNKAADNSRNSWNNNSQNNSAASQNISREQSWKTISVPQKHQNPSDRCSDCQQRGWH
MFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTSEKEAPVAKVETIEGVRMKDCLL
MVKSEKSESEVTRSLEKGQIGKANVEILLDSGASISLMSKNTWEKIVEVNGKSWEQDQIYEELEYKTARTANNQLFTLLR
AVMVEIKMQTKSEVIKFHIGDMDRENVIIGAGHFEQMGIQMNMIIEPRIVRIDEDVEIPPRSCQLVEVNVTGIIREGAYC
LITPTMRHVENAVVRLNEQGKAWVRIVNQFKHMLSLKKGEVIGKGETGGFEVLSNKAEQDITVEEVLNDPTLFSEIETDT
NSCEVVKTAETYERFTTICEHLKRENGDDRKIWDVIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLAL
KPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMI
AGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKE
ALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIAS
SLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFA
SKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLADRLWRWSIEILEFDVKIVYLAGKA
NAVADALSRGGCPPNELEEEQTKELTSIVNAIQTELPDILDSSCWLERLKGEDEGWKEVIAALEGGKTKGTFKIVGIESE
ISLEYYKIVGGVLKNTEIEEQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCL
CANDHSKLTSSLTPYRMTFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRI
PLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQVVYAVYAYNNCVHE
NTGETPMFLMHGRDVMGPLEMSGEDAVGINYADMDEYKHLLTQELLKVQKIAKEHAMREQESYKSLFDQKYASKKHRFPQ
PGSRVLLEIPSEKLGAQCPKLVNKWSGPYRVISCSENSAEITPVLGKRKHILQIPFENLRVIPEAMPDILIVTKKGRSKK
PEPEIYCDEITVVSENNENSCFSCRYICRCALKPCMFNMTLVPEAHTPSPTQLYRMYCIMEKSGNRKIDPKQLMAMSSRP
LPSPLQITLPDKMMDNLFKDMIGCSSLWTYVAELGWENSYNRYVDKLLNENCGDILNGPGTMLILADGLRLEDLPVSTKN
CFVCTDYDEETLIALQKKCCRERFKMIVLVIPFTIDVELVDCWNRLIAKISEETKILVVSNMTPDELEDHALLVEFTSIL
QKCRRVDDGYLEIISLHDRLEAHPRKTLEMTALAGKVEYWKAVQTRAKEVGMEWKAFELKRCTSDTPVKNSDCEASTSMK
SASTVRTFEDRMVKRGNHNRVYHHFTPYGRKK
>R2B_NVi_pol#LINE/R2 This is gi|4322565|gb|AAD16096.1| reverse transcriptase rather than a translation of R2B_NVi, as that sequence has multiple frameshifts [Nasonia vitripennis]
GAAHVERLSAPVVTTVKVYNGQRKQRCLGAEGSCGRDLSSSNRGGVKRRTLRRSQPKEGGCLKCSNTPAKSGRRARNAQQ
ADEPGDDEEIETHGPLTIRTADVEIVAIAKNPQACPKCLQGGTQLLCMGSWELSRHISKEHPSVDVTWVCGACQRRCTTL
RSWSCHVPHCKGRQEPKDLPFKCEHCSLSFDSQIGLSQHERHVHPEVRNDKRAAEANKPKGKSGRRPSIWSDEDLLLIRE
LESEYHGARNINERIAEHFPDRTGRQVSDARRQGLCRAPRERSPQGPAEGVEAIEEVDEGEILKGKSWCHRWRCVGKRPP
GEWRERTRRTSQSPALESSSQQDRECSPAVGSDEQIKDSDDDEFSDALGEISLPEPLSVERTTISPPPRDDWKGPMRWEI
CNASEEAGSYANWVTGLQELVRNNVLSEIGLDSLYDQLIQIMRHPSDDNEQDRLQLNARGPPRRGHRKNRRRRRLTAADR
KRFAFARCQDLWNNNPKKLAELVIANDLSILQRRQAPGRTETQTLYNELWGRVGPNIEAPRRTEDPIHVSRIFTPITPQE
IMGRIRRIKNDSAAGPDGVTKDDLRGRGVSIALSKLFNSILLAGYYPKAWRENRTTLLPKPEKDPADVKNWRPITISSMV
SRVYSGLLDQRVRAVIKQCDRQKGFTEENGCFSNIQLLDDAVSNAKKAGGVITILDVSKAFDTVPHAVIQGCLEKKGIPE
TVAAYISNMYRDCSTAIRTRSGDVKIGMKRGVKQGIPCHLSFSIWVLEPLLERLQETSGVEIEGMNLSCAAFADDIVCFA
NTAPEAGRQLRMVADYLGRLDMSLSVSKCIAVEYVPHRKTWYTKNPGLEVNGNTVPSISPSETFKYLGAKVSPWKGLLEG
FESDAFREVISRVQRLPLKPMQKVDLLQMYIFPRYTYGLITSPPAKAVLKTIDRIIRTRIKEILHLPESVSSSFLYTPRK
QGGLGLLEVEKMVLIPALRNGLRARQSHDPVTRAAMNSNAADDRLKSYADALRLHWPLTTEELDTYKYQLRLSYAQKWAE
QKWQDQGVEEFAQDPVGNSWLQRYDLLPASRYIDAIKLRTNTYPTRALMKIIDGRVDSSCRKCQGSSETLGHILGRCRYS
KDKRISRHNEIKDLLKARLAKNHQERTEPQITVRGQRFKPDLVVKTNEGRVHVIDVTVRYEHRTYLDEGRTEKIGKYRQI
LSSLRRDLHSNAEEVIPIVIGSRGAIPRETRKALSKLGIGKSDWLTISLIALRSSLEIVNAFMDD
>TRAS1_Bombyx#LINE/R1 gi|1549144|dbj|BAA07467.1| ORF2 [Bombyx mori]
MKGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDVIQYPQLTTNNIVVVGIRTRAWEITLVSYYFEPDKPIESYLEQIKRVE
RKMGPKRLIFGGDANAKSTWWGCKEDDARGDQLMGTLGELGLHILNEGDVPTFDTIRGGKRYQSRVDVTFCTEDMLDLID
GWRVDEDLVSSDHNGMVFNIRLQKSKSIKIERTTRIFNTKKANWSLFHEKMAQLLLDNNMTTLIDTIDNKTKVESAINTY
TNIITKTCEQSIPKKTSREILTIPWWSEKLAEMRKETNTMRRRIRNAAQDRRQHVVDEYLKQKEKYESEVREAQAGSWKE
FCGKQDREGVWEGIYRVMSRARTREEDCPLTDVNGAPLDPEKSAKLLAETFYPEDREEEDNDEHAEIRRRAKISEGVHDE
YVPSFTVNELKHALKSFNPKKAPGADGLTSDICTHAVDLDQKLFLGLINKCLEHRYFPKIWKAATVVILRKSGKDSYTEP
KSHRPIGLLPVLGKLYEKMLVARLKYHLLPRMSTRQFGFMPQRSTEDSLYTLMQHVKEKLKEKRIITIVSLDIEGAFDSA
WWPALEVRLAEEKCPEYLRRVISSYLSDRRVSVRYAGAEYERATSKGCVQGSIGGPILWNLLLDPLIHQLQARGEYIQAF
ADDVVLVFDGDSALQIERQANTSLEHVQAWGVRNKLKFAPHKTCAMTITRRLKYDTPRLNMGGTEIATYKELRILGLTID
DKLTFNTHVRNVCKKAIGMYKILARTARVGWGLSPEVIRVIYVAVVEPTVLYAAAVWHESVYKLGVQKQLNVIQRGFAQK
LCRAYRTVSLNSALLMAGILPLDLRVREAASLFEAKKGVCQSWLGDREIERMSSAMDAPHPAEQQSLEFGNLVDEEQYNN
LNHLDVRIFTDGSKIEGRVGAALSIWDGEVEIRSLKLALAPYCTVYQAELLALSYAVKEAQLRNGSTFGVFSDSKAALLT
VINHGSLHPLAVDIRKMLKQCALQNKTVALYWIKAHAGLEGNERADQLAKEAALLSKKSPNYDLCPVSYVKRIIRSGSLD
EWNRRYRDSDRASVTKMFFPDAVAAYSTVRKMRITGHITQFTTGHGGFSEYLARFKCKGDPSCACEPGMPETVEHLLTSC
PIFGKQRFELENKINKIVNKENLCKLIVEKYTKELFIVMLYK
>SART1_pol#LINE/R1 gi|2055276|dbj|BAA19776.1| Pol protein R1-4_BM_pol over 80% identical and of poor quality. [Bombyx mori]
MTSSPYHILQGNLNRSARAQDLLIQSMAERLTHLAVVAEPYRVPSVPDWAGDIDGLVAVVQRRSAVGAPPEFDVVQRGRG
FVAVFWAGLLVVGVYFSPNRPLAEFESFLDELGQVVGRSRSRRALVLGDLNAKSSAWGSPVTCPRGRETEEWLVGSGLVV
LNRGAENTCVRRSGGSVVDVSFATPDVARRVCGWEVLVDVETLSDHRYIGFRVAAAPESSSVTTLPFGGGVEGPRWALKR
LDTERLQEAAVVQAWRLDSLGEPADVREGAERLREAMSRVCDYAMPRVRAYAPRRQVYWWNEGIAGLRRRCAGSRRKYQH
LRRRRRRDEEEEDRAYEEYREDVRALRVAIGEAKEAAWKELLETLDRDPWGRPYRLARSTMRSWAPPATSTLPPDIVRHV
IGGLFPDAPGTPFVPPVMITPTTGAQIGAEEEEVSPAEFGAAIEKMKARRTAPGPDGLSNRAWALALQTEGGLGPVLRGL
LSRCLREGRFPEEWKTGRLVLIPKEGRPRDQPSGYRPIVVLSEAGKLLERVVAGRLVRHLENVGPNLADSQYGFRRGRST
LDAVQRVRDLSDQACSRGGVLLAVSIDISNAFNTVPWSTILESLRFHRVPTGLRNLIEDYLAGRAVVFPERRGWGHKAVS
CGVPQGSVLGPLLWDVGFDWVLRGANLRGVQVICYADDTLVTARGDDYRSASILAAAAVATVVARIRKLGLEVALHKSEA
VCFHPARKGPPPGASITIGGTAIAVRSQLKYLGLVLDSRWSFDRHFDVLVPKLLGAAGALARLLPNIGGGGKSVRRLYLG
VVRSMALYGAPVWSPTLSARNAALLQRVQRVLAVRVVRGYRTISTEVACALAGSLPWEYEAEVLAAVYRRRAQSLGRGSV
PRLSVVARWRRAARRVATLKWKERLAAEEIHRGSRTRRRTLAALVPVLEAWIDRRHGVLDFRLTQVLSGHGCFGRYLWRV
GREPHPGCHQCGHPDDDAQHALEACPRWEYPRQSLVAVLGADLSLPVVVSRMVEDERCWRAMADYADLVMTLRETEERER
ECDPNSVALRRKRRGGRRGRRAPAQLP
>TNT1#LTR/Copia 73-4068 gi|130582|sp|P10978|POLX_TOBAC [Nicotiana tabacum]
MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDT
ARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLA
TTILHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGH
FKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFG
TVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGT
LYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNI
LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREF
EEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTN
KEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVK
NGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPST
EYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVV
KGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSL
YGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP
AQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMY
AMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTF
SGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRY
HWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGMHSN
>R1_Ele1_gag#LINE/R1 268-1839  [Aedes aegypti]
MNTNLNQNQNNSSSAGSSSSREANPFARSGLARSPLRRAEAGGGSSARSASAGNHISSPANASGEVMDGAWLMRAINKSR
DGLSAMEVAAQQLDSIIDFASSKSNISKDLKQALFRLRKSMFAAKQNHAEPMATVAAAEPVELKVPKSTQTEPFVFAGSP
KSAEANAYNKQSQKRARQPSGEELPGGARKARRILTPKTGRSAGKSDPSQASRKAEKGGPEKAGPSRSDGNRGLRPLRGP
QSPQVRADQGGDAPWTTVVRKKKKEKQEVQERRDTRPKKSRRVGAKREKGDAIIIKTEESKYSEVLKAMRSDAKLADLGA
DVRSVRRTRTGEMILELKRDKERKGAAYKSLAEEVLGEGVEVRALTQSVTLKVMNLDEITNAEELVTALRQQCEIQVPTA
AVQLRKGPAGTQVALVHLPVADANKSAKVGKIKVGWSVCSLNIHEQPVICFRCREPGHKSWGCKGPDRTKLCRRCGEEGH
KALGCKNPPKCLICSGKSVNNNHPTGGSRCPTFKRAINEKSQCR
>Copia-47_ZM#LTR/Copia 376-5604  [Zea mays]
MAGEQPPLSPSTFPPLSSWARAVSPGRPAVAASPAAAAATVRGRAPLAPPHPLPAAAAVSPAGAQALVAGAWGSVPASPA
LGPTWGDGPTAAGGALTAARTASALAAVADAVPARVAGPEDPPPPIPPSLVVDPPPVVDQPPPPPITHQGYTVAALTAAR
AEHAARQARLREAALVWEREREAADAIAAQIAAAEQLLASPATHDGGVTSSDTMGGVYGVPTAPTVGTGPRTIPTVLWHD
PADPLVAQLHLQAGSVQNIRLMVPVVLEPESPSYARWRDLLLLTLRRYALDDHVLCDPTGMAPTATWVRLDSIVLTWIVG
TISVDLHSLLRNLPHARAVWLAIEGQFMGNAEARALRLDAAFRTFVQGDLSVSAYCRKMKTMADSLGDLGCPVEDRILVL
NVLRGLGDRYTHLRSLIMRQRPFPTFLQVRDDLALEEITLGAQAASISGTGSSSSSTALAAFTPTRPPTPSQSALGPRPP
GPSMGGGGRGGRGGGGGGRRRRGGRGGGSGGGARGHAPTPGPQQGAPWPTFHHPWSGRISMWPFQGPGSEARPPAAMFAG
AQPGFAFASPSPWTSTPAASSWPTPPATPPSGLVGWDAATLAAFQTPTLTPPMGPEWIADTGATYHTTPDPGILTSVRPP
SSGSPLFALPSSIMVANGSCLPVTSVGAASPPGSFRIPDVLVAPSLVHNLLSIRRFTADNSCSVEFDSFGLTVKDSATRR
PLLRCDSTGPLYTLRLPHATSSSSSSPDTAAVFAAATSSTTWHRRLGHPGRDALMQLTRSATIPCTRSHDEHLCHACQLG
RHVRLPFSSSSSHATHAFDLVHCDLWTSPITSMSGYKYYLVVLDDFSHYVWTFPLRAKSETFPALRHFFAWVSTQFGLTI
KAVQCDNGREFDNSTSRDFFLSHEMQLRMSCPYTSSQNGKAERMIRTTNDTIRTLLLQAHLPACFWAEALHTSTYLLNRL
PSTACPAPTPHQALFGTPPRYDHLRVFGCACYPNTTATAPHKLAPRSTLCVFLGYSPDHKGYRCFDLCSRRVLISRHVVF
DESVFPYSSTTTPPSSDPDLDPFTLFPTDTVVEPPLLPLSAGTRSPPVGPTPGPVPCSGPVVSPTVLSPLRGAPSPIAPG
PSEGGGTAPPTGPSVLTPPARFAQPVRVYQRRLPPPGFAPPPSPPLPLSTPVAQSPPGTPTPPPRPPAARVETPVYHPPL
LHRDPRHVHPMVTRHAAGTLPPRVLAATTADSQISPVPSPVRTALLDPHWRRAMEEYAALVANQTWDLVPRPPGTNVVTG
KWIWTHKRRADGTLERYKARWVLRGFTQRPGVDYDETFSPVVKPATVRTVLSLALARFWPVHQLDVKNAFLHGALTETVY
CCQPAGFVDSSRPTMVCRLNRSLYGLKQAPRAWHSRLATFPVTLGFVEAKSDTSLFIHHHGAETAYLLLYVDDIVLTASS
QSLLRRLVDALQREFPVKDLGVLHHFLGVTAEPRPSGLLLHQRQYTLDILERAKMIDCKSCSTPVDTQAKLSEAMGDPVE
DPTGYRSLAGALQYLIFTRPDISYAVQQVCLHMHDPREPHLAALKRLLRYLRGTVDYGLLLHRSTSSELVVYTDADWAGC
PDTRRSTSGYAVFLGGNLVSWSSKRQPVVSRSSAEAEYRAVANGVAEAAWLRQLLAELHSPLSRSTLVYCDNVSAVYLST
NPVQHQRTKHVEIDLHFVRDLVAVGDVRVLHVPTTSQFADIFTKGLPSSTFAEFRSSLNISSG
>ATCopia6#LTR/Copia 118-4473 [Arabidopsis thaliana]
MSDSTSPVSVSETIAVSTSTLLNVNMTNVTRLTDSNFVMWSRQVHALLDGYDLAGYIDGSIPIPTPTRTTADGVVTTNND
YTLWKRQDKLIYSALLGAISLSVQPLLSKANTSAEIWETLSSTFANPSWAHVQQLRQQLKQWTKGTKSIVTYFQGFTTRF
DHLALLGKAPEREEQIELILGGLPEDYKTVVDQIEGRENPPALTEVLEKLINHEVKLAAKAEATSVPVTANAVNYRGNNN
NNNNSRSNGRNNSRGNTSWQNSQSTSNRQQYTPRPYQGKCQICSVHGHSARRCPQLQQHAGSYASNQSSSASYAPWQPRA
NMVSATPYNSGNWLLDSGATHHLTSDLNNLALHQPYNGDEEVTIADGSGLPISHSGSALLPTPTRSLALKDVLYVPDIQK
NLISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGKTKNELYEWPVNSSIATSMFASPTPKTDLPSWHARLGHPSLPI
LKALISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSNTIASSHPLEYLYTDVWTSPITSIDNYKYYLVIVDHYTRYTWL
YPLRKKSQVREMFITFTALVENKFKFKIGTLYSDNGGEFIAMRSFLASHGISHMTTPPHTPELNGISERKHRHIVETGLT
LLSTASMPKEYWSYAFATAVYLINRMLTPVLGNESPYVKLFGQPPNYLKLRIFGCLCFPWLRPYTAHKLDNRSVPCVLLG
YSLSQSAYLCLDRATGRVYTSRHVQFAESSFPFSTTSPSVTPPSDPPLSQDTRPVSVPLLARPLTTAPPSSPSCSAPHRS
PSQSENLSPPAPLQPSLSLSPTSPITSPSLSEESLVGHNSETGPTGSSPPLSPQPQRPQPQSPQSTSPHSSSPQPNSPNP
QHSPRSLTPTLTSSPSPSPPPNPNPPPIQHTMRTRSKNNIVKPNPKFANLATKPTPLKPIIPKTVVEALLDPNWRQAMCD
EINAQTRNGTFDLVPPAPNQNVVGCKWVFTLKYLSNGVLDRYKARLVAKGFHQQYGHDFKETFSPVIKSTTVRSVLHIAV
SKGWSIRQIDVNNAFLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNSVADTSL
FTLRHERTILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNM
LAAHPVLTPMSPTPKLSLTSGKPLDKPSEYRAVLGSLQYLLFTRPDIAYAVNRLSQYMHCPTDLHWQAAKRILRYLAGTP
SHGIFIRADTPLTLHAYSDADWAGDIDNYNSTNAYILYLGSNPISWSSKKQKGVARSSTEAEYRAVANATSEIRWVCSLL
TELGITLSSPPVVYCDNVGATYLSANPVFDSRMKHIALDFHFVRESVQAGALRVTHVSTKDQLADALTKPLPRQPFTTLI
SKIGVAKAPPS
>Copia-11_ADe#LTR/Copia 170-4824 via tfasty with Copia-6_ADe, 86.1% SW:5618, 1 frameshift and 1 stopcodon. [Auricularia delicata]
MSSAFKLSTFSGEKLKGPENFLDWYAEVELWLMSNDLLWLYVEGPCEWAPTALKAAHIKEQADLEAASKAANAAFTKEPY
RAAPGVPSTDAEWSVRRMICYAGILLTIMPDCRKAIKATSKNDPAQAMRDLRARYGTDSAATRFLLFRELLTSRKPSDKD
WSLFHDEVLTKTKRAYGDSEHLPINEFITMVLVIAVPPEWQDSIRTLQHKYAFDQHEALVMDLTSEENIRNSRATEHAQL
QALIASTKPAASPAKKSRNGSGCTNPLCIAAGVADRHDLPHCFEDGGGMANNRPSWFRSHAGRVKAQVATAPSTTTPNAS
TATPTPSPIPASTPRALSAFIEDVSDSGGDDSDTSYESGASIGCVAFSGRYESPGTATANPVADLAPVPSVAVFDSEAAV
FAGDQTPAPIGLFSYGHGSGAFDTGANDHFERDITRFSNYRLLPTPLYASGLFGQGPPSIGVGDVSYRLGKGRTLRLRDV
LHTPGATMSLISISKLCKENDMLEAIFDSAGCVVRRKGSHKTIVTGYLSQEGLYMLPDSTQKVACSARRVSMASDILTWH
NRLGHPAMDAVMRLARSGNLPGVHATSSTRAPICEHCLAAKGKVLPFPQESETRAEKPLGRVIVDLTGPVDTESLSRKVY
GAGLIDEFSDYVVYDFLRTKNEAAAAHETTLSELEAIAKHKVEIVRTDNGGEFEKDYHAMLLRRGIVHETTAPESSAQVG
RVERTHQTIARRARAMLRAAGLPKTFWAEAWRTAAYLANRLPRKRHNGRTPYEVFHGKKPRYVRFREFGCKCFVVKGKKK
RKPKLDDKAIECVFLGYWEHSKAYRCWDPATRTIIKARNVSFIESRDLHRLSSAIHRTDPDLVVPEPSPDAICAEDGVSD
SESDVASETDPDPAPSVPPQVVVPPHPPAVREPETVVNGTRRSGRIRTQSKKVTETTDERTKRAQHIAGPRLTTEESSAL
ADRLNESRKADKLVEEVLGEVLSDGNPLRGLLAMAHDLGSPLYALHAMGEFPDRVPFTYEQATRSPYASKWKEAMDVEMQ
ESMAAHNVWEEIPLDEVPHDRKIVDCRWVYDLKHDEAGNPTRYKARLVAKGYTQRPGLDFVETSAPTCRQESVRALAALA
ALKxWETRHLDVKTAFLNGDLEEQIYMRQPKGYESPGAKALKLLRALYGLKQAGRQWYLKLKAVLLSHGFTCCINDPCVF
MRKENGRICIIAVHVDDMKLVGNTSEAINLVVQALEKEFTITDLGELRWFLGMKFSRDRDRRTVTISQPAYIEQILRTFN
MQDCHPVSTPGVPSKYLSKGRALTQAEHEYMQRVPFKELVGSLTWLAIMTRPDISFALGQVSQFSAAPKPWHWEAGKRIL
QYLRGTADWGLFYDPTRASAPVVGSVSSQAAYLHKGHGAHCFTDADWGNCPDTQRSTSGYAFLFHNCLISWSSRKQKGVA
LSSTQAESHAAKEGGKEGIWIGNLLRELELISGSIPLHMDNQGAIALGNDTKHHDRTKHMMIQISWLRERTAAKDFTIVY
TPTDEMVADIFTKPLSPAKHKTFTVMLGLRSA
>Copia-13_ADe#LTR/Copia 153-5048 64.7% sim to Copia-6_ADe, SW:2596, [Auricularia delicata]
MATPGYLRSLPATFVVLSDEVDYDEWHEDIMDYFRQQRVASYISGCNEQWPPTPVTTTIPGTNAGPQLTAGVPTAPAPAL
TITSAGTPYGVASCVEEWDETRKAMCGILQSAISRDIRRTLPASVADDPKRIIEELEKQFKKNAPMTRMIKLKHLLTLKK
PQNVKWDPHINSVLDLARVALQGTLTMKQLVTIAIILSAPPEWDSYMGTCMQQCSLDEPNEFRAALRAEEDRRANEERAQ
SELQALVAAAQVSKKTKPREPRAKVDNPCMHPKCIACKVQDTHMKRDCNRYKAEKEAADKALAAKVDSDNDSNSDVSTLL
AMLTPSAHSPQIPAPNAMVAAVAGPNAPSAPTVTSPLVAPAVPLPMNPYDLGSRTIALAVGKLKPASGAVDSGSQRHFEP
DIARFYEYRVLDKPVAITCFTGAQIFAVGIGKVQYRMGKGRYLKLGDVYHTPGAAASLISVGALADHKNVEVVFCKTECI
VQYISSNEIARGTRSNRGLYLINNVPTASRTALWASSRAPPDLLTWHRRLGHPNMASVLSLARSGALQGVRFVDNDPLPI
CEDCLMTKSKVKPYPRSSTPTTECLEKVGSDLCGPMKSASLSGSRYALNHYDLHSHYLAYDFVRTKDKATDVARDRLREL
SAECGKPVRAVRTDNGGEFSGCYDEMLRDLRIVHETTAPESSAQNGAAERAHQTIARRANAMLKAAHLSDGFWAEAWACA
TYLHNRTPSRALNWRTPYEVFYGRPPTYNRLAEFGCDAWVVRSEKDRLPKQELKAIKCKFLGYFEHSKSYKCWDANKHKM
IKSRNVAFIEPKDYAMLSSFSDSYIPPDDFLDDTAQCTHPFSSPPNPSSHTPSRVAPAAVPRASASSGIDGPTQAHVRPE
STDKDGIGEPGAPLRCPNACIEAPGSVIHGDVDPTIPPVGDNAGQHGAAAGPHGVPGNAPEVGAPGQHGTEAGPHGVLSK
RPATNEDGNKRAKGRGNGRKPLKDPQHEMRGGESGDALSEPERSRRGGEPSTNSNSPRRTGRVRVSAALSEEDAAKLRDE
LKAERNRVFREGRIGLDAKQPDADPEDPDALVAWLAAMVAGAEFPERIPRSFNDAMRGPFADQWRVATDAEMQSLNDHKV
FEPVDAADVAGGNNIVDCRWVFTIKHDENGKPVKLKARLCAKGFSQRPGEDYGETAAPTCRPESVRALLSLATKENWEVH
HYDVKTAFLNGDLDEEIYMKCPPGYKGNTSGIVKLLKALYGLKQASRCWYETLCKALASIGFMPLLSDRCVFMRKHEGGV
DFLAIHVDDLLAFAGDLKRSRLVRQQLMSLFTITDLGEVRWFLGLKITRDRDKRTLTISQEAYVETLLKKFGLEDCNTVS
TPCVPGQYLRSGSETTSAREEIMRHVPHRELVGGLTWLSVMTRPDISYAVMQVAQFNAGPAGHHWIAAKRILRYLKCSKD
LGLTYDHSKGSEARLEGLVSPQTAQYHPGHGPKCFSDADWASCPETRKSVSGYAFLLNGDLISWSARKQKTVAHSSTEAE
YMAADDGGREAVWLSELLREIGVAFEITPLLMDNQGSMALAKSLNFSRETKHIATKIAWLQGAVRDGVFSLTYVPTNDMF
ADVFTKPLSPAKFKRFVDLLGLRSTRGGVLDT
>RT2_gag#LINE/R1 1134-2858 gi|159619|gb|AAA29366.1| [Anopheles gambiae]
TPELKRKPTSSCSRSPARRRRIQGHSDPLGHSTPGSFDPQGYFTPPIANVGYRDGSTREIDPLGARATSVDCRTSLAPCS
KLFAAEPRVALPKLSATGASKPIAEPKAASATPAPELELLRATIQRLEEQNCAMKEQNAKLLEQITGMCQLLQEEKEEAK
RREEKLEAQMEKLAAAHQRDRDVLNSLLAAKVGGGQPSASPRQPPTPLPRRSSAQPQQQQQQQQRNQHEQEQPRASTSRA
VMPPRSEALTAVRGDVVPELTYSEVVRRRYRGKATGKPRSQQQPQQQQQQRQLQRQAVGIAQHQQQQQQRQPQRQAVAGS
QQQQQERMQQQQQLQRKRKPRPDIIEVSPSEGETWDGIYDKVRKAIRLDAAHSEMKGHIKQGRRTHARLLRMELSKTANA
PLMLEGVRKIIGDAGVSRLVTEMGELLVVDIDPLATEEDIIAALDAKIGASAGVVSASIWELPDGSKRARIRLPVKSARQ
LEGLKLFLCDCVSKVRAAPPTPPERQRCFRCLEMGHIASNCRSTADRQNLCIRCGLTGHKARSCQNEAKCALCGGAHHIG
HSECARSAQRCSRP
>Copia-38_CQ#LTR/Copia 113-4330  [Culex quinquefasciatus]
MPNGDGSGAGAQGAVQPEARGQNYGAGGHPPIERLVGRDNWRTWRFAVRTYLEIEDLWDVIEPAQGAADAKKDRIARGKI
IFFLDPSIFHHAENAKTAKELWTKLCGLYEDTGLTRQWALLHKLITTNLASSGSMEAYVNRMTTTANQLIGIGFPLDEKW
IGMMLLAGLPLDYRPMVMGLENSGIAITGDAIKTKLLQEDDLPVEPAGGQAYVSKGRHKDNKQGKPQPSAAPSKSKGSKC
HRCGKAGHFARDCTAKELVRNDRDGKKKAFCAVLSVLDSDDANDWYFDSGAVKHLTRNEALLENPRTTSGSIIAANNQAM
KIVAEGTMTLQPTCYDDTIEVENVELVPELAVNLLSVGKIVDQGHTVVFNKDGCEVIDADNSVFATGSRSNGLFKLDQIK
PRALACSSRETAELWHKRLGHMCMKNLIKLKNGLVNGIKFEGNECGRGCIVCAEGKQTRLPFSHAGTRAAGILDLVHSDI
CGPMEEKSLGGCRYYLSFTDDKTRKIFVYFLRTKSKEEVLQCFKDFHVTAERQTGRKLKVIRTDNGLEYTNRLFQDYLSG
MGIRHQTTVEYTPEQNGLGERVNRTAVERARCMLFEAYLPKPFWAEAVAAAIYLINRSPTKGIEMTPEEAWSGRKPDLSH
VRVFGTIAMAHVPKQKRRKWDKKAVECILTGYEEDTKAYRLYDKKTRSIINSRDVTFVSEGVVKRGVTAEPRASGPERTC
VRLDFWEYVPADAVQEVVPPEAAEPQKEPDEEPEDAFESAESSDDDVSFAEDDPLPALPPQSSSEPPKEGLRLSGRERFL
PGKYKDFKLGNKGLPVTKFADKTTTMTNAAARPEDPAAAPPSCSYQRSVADDGQQRLMLCDRGRPPQGKYSDNPDESPDT
GIDTPQPLLDDPFTHQQALARDDAEHWKQAMKDEYEALISNGTWELCDLPEGRSAIKCKWVYKTKLDVNGDIDRYKARLV
IKGYSQRKGVDYEETYAPVVRYSSLRYLFALAARLDMKVDQMDAITAFLQGELSEEIYMEQPPCFVDGKKRSKVCRLKKA
LYGLKQSSRVWNKKLDAALRKFDLVCTDYDPCVYTKVRGDKMLFVAVYVDDVLIYSNCDRWKTEIKAQLSREFKMKDIGP
AKYVLGIRVSRSKDEIALDQEKYVEAILSRFQMTDCKPVSTPMNVSEKLTRDACPSTDQEKERMKSVPYQEAVGCLMYLA
QSTRPDICYAVNILSRFNSNPGEKHWCGVKHLFRYLRGTSKYRLTYKKGGVSKIEGFSDADWAADLEDRKSITGYVFTAQ
GGAVSWSCKRQQTVALSTCKAEYMALSVAVQEALWWRRLRGRIESEEAITIHCDNQSAIAVARNGGYHPRTKHIDIRHHF
IRDALEKGEVVVDYVRSEEQTADGLTKPLCRTKMEICRYQLGLQHP
>SIRE1_gagpol#LTR/Copia 53-4789 [Glycine max]
MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGN
SKALNALFNGVDKNIFRLINTCTVAKDACGEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANAC
TALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRNEKKSKNLAFVSNDEGEEDEY
DLDTDEGLTNAVGLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYHKKSDEKPSHSKGIQCHGCEGYGHIKAECPTHL
KKQRKGLSVCRSDDTESEQESDSDRDVNALTGRFESDEDSSDIEITFDELAISYRKLCIKSEKILQQEAQLKKVIANLEA
EKEAHEEEISELKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSACRITMTEFVPAKNSTGA
TMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMMWVPKHKIVSLVVHTSLRASAKE
DWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNV
NFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLK
IEEGRICGECQIGKQVKMSHQKLQHQTTSMVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVF
KELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEATRVMLHAKELPYNL
WAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVF
NSRTRTVMESINVVVDDLTPARKKDVEEDVRTSEDNVADTAKSAENAEKSDSTTDEPNINQPDKSPFIRIQKMQPKELII
GDPNRGVTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTN
EEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVD
PTHLDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVP
QMQSEFEMSLVGELHYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQNLYRSMI
GSLLYLTASRPDITFAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKCTSG
GCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHNRTKH
IDIRHHYIRDLVDDKIITLEHVDTEEQVADIFTKALDANQFEKLRGKLGTCLLEDL
>TTO1_NT#LTR/Copia 716-4732 TOTO1_LP near-identical with a large deletion. [Nicotiana tabacum]
MEARTSKMVNLNGTNYHLWRNKMKDLLFVTKMHLPVFSSQKPEDKSDEDWEFEHNQVCGYIRQFVEDNVYNHISGVTHAR
SLWDKLEELYASKTGNNKLFYLTKLMQVKYVEGTTVADHLNEIQGIVDQLSGMGIKFDDEVLALMVLATLPESWETLKVS
ITNSAPNGVVNMETVKSGILNEEMRRRSQGTSSSQSEVLAVTTRGRSQNKSQSNRDKSRGKSNKFANVECHYCKKKGHIK
RFCRQFQNDQKKNKGKKVKPEESSDDETNSFGEFNVVYDDDIINLTTQEMTWVIDSGATIHATPRRELFSSYTLGDFGRV
KMGNANFSTVVGKGDVCLETMNGMKLLLRDVRHVPDMRLNLISVDKLDEEGYCNTFHNGQWKLTKGSLMVARGTKQSKLY
VTQASISQQVINVAENDSNIKLWHRRLGHMSEKSMARLVKKNALPGLNQIQLKKCADCLAGKQNRVSFKRFPPSRRQNVL
DLVHSDVCGPFKKSLGGARYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLVERETGKKLKCIRTDNGGEYQGQFDAY
CKEHGIRHQFTPPKTPQLNGLAERMNRTLIERTRCLLSHSKLPKAFWGEALVTAAYVLNHSPCVPLQYKAPEKIWLGRDI
SYDQLRVFGCKAYVHVPKDERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFVEDQTIEDIDKVEKSTDDS
AEFELPPTVVPRQVGDDVQDNQPEAPGLPNEDELADTEGNEDNGDDDADEEDQPQPPILNNPPYHTRSGRVVQQSTRYSP
HEYVLLTDGGEPDSFEEAIDDEHKEKWIEAMQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLV
VKGFNQRKGIDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQKGKEDYVCRLRKS
LYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLYVDDMLIVGRNVSRINSLKEQLSKFFAMKDLG
PAKQILGMRIMRDREAKKLWLSQEKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYASAVGSLM
YAMVCTRPDIAHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLCLCFGEDNPVLVGYTDADMAGDVDSRKSTSGYLIN
FSGGAVSWQSKLQKCVALSTTEAEFIAATEACKELIWMKKFLTELGFSQDGYQLFCDSQSAIHLAKNASFHSRSKHIDVR
YNWIRDVLEKKMLRLEKIHTDENGSDMLTKTLPKGKFEFCREAAGIVDPPYSWKGENC
>ENDOVIR1_gagpol#LTR/Copia 67-4998 ATCopia58 close (misses chunk) [Arabidopsis]
MDYPKEFVAVGKAIMLEKGNYGHWKVKMRALIRGLGKEAWIATSVGWKAPVVKGENGEDVLKTEDQWTDAEEAKATANSR
ALSLIFNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLTMDESENIEEFSGKISAIASEAHNL
GKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTDTIDFEEVVGMLQAYELEITSGKGGYSKGVALAVSSEKNEIQELKD
SMSMMAKNFSRAMKRVEKRGFARNQGSDRDRDRDRDRNSKRSEIQCHECQGYGHIKAECPSLKRKDLKCSECRGIGHTKF
DCIGSKSKPDRSYIAESDSDSDDEDSEEDVKGFVSFVGIIEDDNVSSDSSDSEVGCEKEEISADDESDVEMDVDGEFRKL
YENWLVLSKEKVIWLEEKVKVQEQIEQLKGELAVANQIKSEMILKYSAKEEKNRELSQDLSDTRKKIHMLNKGTKDLDSI
LAAGRVGKSNFGLGYHGGGSSTKTNFVRSKAAAPTQSQSVFRSKSNSVPARRKYQNQNHYHSQRTVTGYECYYCGRHGHI
QRYCYRYAARLSKLKRQGKLYPHQGRNSKMYVRREDLYCHVAYTSIAEGVKKPWYFDSGASRHMTGSQANLNNYSSVKES
NVMFGGGAKGRIKGKGDLTETEKPHLTNVYFVEGLTANLISVSQLCDEGLTVSFNKVKCWATNERNQNTLTGVRTGNNCY
MWEEPKICLRAEKEDPVLWHQRLGHMNARSMSKLVNKEMVRGVPELKHIEKIVCGACNQGKQIRVQHKRVEGIQTTQVLD
LIHMDLMGPMQTESIAGKRYVFVLVDDFSRYAWVRFIREKSETANSFKILALQLKNEKKMGIKQIRSDRGGEFMNEAFNS
FCESQGIFHQYSAPRTPQSNGVVERKNRTLQEMARAMIHGNGVPEKFWAEAISTACYVINRVYVRLGSDKTPYEIWKGKK
PNLSYFRVFGCVCYIMNDKDQLGKFDSRSEEGFFLGYATNSLAYRVWNKQRGKIEESMNVVFDDGSMPELQIIVRNRNEP
QTSISNNHGEERNDNQFDNGDINKSGEESDEEVPPAQVHRDHASKDIIGDPSGERVTRGVKQDYRQLAGIKQKHRVMASF
ACFEEIMFSCFVSIVEPKNVKEALEDHFWILAMEEELEEFSRHQVWDLVPRPPQVNVIGTKWIFKNKFDEVGNITRNKAR
LVAQGYTQVEGLDFDETFAPVARLECIRFLLGTACGMGFKLHQMDVKCAFLNGIIEEEVYVEQPKGFENLEFPEYVYKLK
KALYGLKQAPRAWYERLTTFLIVQGYTRGSVDKTLFVKNDVHGIIIIQIYVDDIVFGGTSDKLVKTFVKTMTTEFRMSMV
GELKYFLGLQINQTDEGITISQSTYAQNLVKRFGMCSSKPAPTPMSTTTKLFKDEKGVKVDEKLYRGMIGSLLYLTATRP
DLCLSVGLCARYQSNPKASHLLAVKRIIKYVSGTINYGLNYTRDTSLVLVGYCDADWGGNLDDRRSTTGGVFFLGSNLIS
WHSKKQNCVSLSSTQSEYIALGSCCTQLLWMRQMGLDYGMTFPDPLLVKCDNESAIAISKNPVQHSVTKHIAIRHHFVRE
LVEEKQITVEHVPTEIQLVDIFTKPLDLNTFVNLQKSLGIGEV
>RIRE1#LTR/Copia 1303-5256 [Oryza australiensis]
MAANTTPSTFNLRSILEKEKLNGTNFMDWYRNLRIVLKQERKEYVLEVPYPEELPNNATATARRGFEKHTNDALDISCLM
LATMSPELQKQYESSDAHTTIQGLRGMFENQARDERFNTSKSLFACRLVEGNPVSPHVIKMIGYIESLEKLGFPLSQELA
TDVILQSLPPSFEPFILNYHMNNMDRTLAELHGMLKTVEESIQKNGHHVMMMQNAKRKPPVKKLCTKRKLTPDEIASASN
AKKGKKGSAASDAVCFYCKETGHWKRNCKKYMEDLKKKQSTTSASGINVIDINLATSPTDSWVFDTGSVAHSCKSLQGMR
RSRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQNVISASCLQAEGYDFRSMNNGCSIYLRDM
FYFHAPLVNGLYVLNLEASPIYNINTERQLSNDINPTFIWHCRLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKM
TKAPFTGHSERASDLLALVHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIK
FLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAALTLNRVP
SKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSDKLTPKSDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKE
FLSRRVSGIRVHLEEVQETPETVSATTEPQQEDQSVAPPVVDTPAPRRSERSRRAPDRYTGAEQRDILLLDNDEPKTYEE
AMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFS
PVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDE
VIKGFGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRL
IGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPDVSYALSATS
RYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDTVA
DSTTEAEYIAASEAAKEAVWIKKFVSELGVMTSTTGPMSLYCDNSGAIAQAKEPRSHQKSKHILRRYHLIREIVDRGDVK
ICKVHTDLNIADPLTKPLPQPKHEAHTRAMGIRYLHD
>Tad1_NC_pol#LINE/Tad1 gi|409764|gb|AAA21792.1| contains reverse transcriptase and cys finger domains; ORF2  (this really is Tad3, but sequences are almost identical) [Neurospora crassa]
MVQLKILYWNVGKSYERGKLLLEQEETYDIVAIQEPGRNLNGDIYRPRGGRYFGVDCSEKGRAVIYVNKKWNLKDLDFQA
GKDWTAVTFKNLRDPTTVYSIYSPILTQGTPEHQWGSPLLEFIEAGPPAGNLVAVGDLNLHHPDWDLENRTSPGAARLLT
WARRWRLSLLTPRGEPTRLGNATRGERDGTIDHAWLSPGVEAEYWGAQRCEQTGSDHCPQEIWVQVGRKNKKAEEEGGYS
WSLMDTEKVKEASEKRISVPERIDTVEDLELAFRRLDGELTSIAEEFVPHRKKGRGRRANWWTLECKTATKEARRTYWEW
FGCRTASNWREFVEATMKKKRIIAKAQQATWRDGVAEASKNPSRLWPLERWARTRSHRPADPPKLPALQTQEGAAEIGDH
SGKAEILADRFFPKVEVPTDHLPDWTEPPEGVDPIVISELVDEEDVQDVLSRMAPNKAPGIDWYSNRFLKLCGQPFRQAM
ACLASASLRLGHFPQRFKDAKVVVLKKPGKSAAQQKLAGAWRPISLLSNVGKILEALVAKRLTQAAEEFNLLPEGQMGNR
AGRSTEFAVRVVTDAVHTAWKLGAVTSLMLLDLKGAFDRVNHRWLLHTLWEMQLPTWIIRWVASFVAGRRGSLFFDDETS
RPYAITAGVPQGSPLSPILFILFITPLYRKLATIPNTITVGFADDTNVVAVARTTEENCRTLQAAWEVCSEWAGARGMEF
EATKTELMHFTRTRAPRTETLQLGDTVLQPTESTRFLGVWLDRKLNYRAHAEAVKQKMTTQTNALTRLAAKTWGCSFARA
REIYTKCIRSAIAYGASAFHQPTEVYGKPRGIVIGLAKYQTKCLRVVAGAYKATPVRNLETETFCPPLDLYLNKRVRAFE
ERLARTDQARFVRGTAAWVASCVQARRARGRPPADKPESGAAKARWAEAWAPTEKLLAMAAGPPPESGTPPPASQIPEPT
AADREEWLEDATNREWVSRYNHHLAAAVAKSGQRYEFTIADLNPKFSGEAIQRHMVGTKKKKGRRRKPEEEEDEPYPLTK
AKSSLLVQARTEVIGLRAFLHRRKVPDVLTPICACGLEKETFAHIVLNCLDAETLFWSDPDSWPLSKEELQEYLDDGVKA
ERILSWALRLGRLKEYRLAVELEEDQREELARHS
>Tad1_NC_gag#LINE/Tad1 gi|551304|gb|AAA21791.1| gag-like protein  (this really is Tad3, but sequences are almost identical) [Neurospora crassa]
MSCDERSDGVVSSLPMAIDGGARGLENSVHNPLAEISACNDPEAALTAKTSDKTEEDDETLKKFIARANKSTDYDTVSTE
DRRWARELLLEFAKARVGKSGSTRPEADKAGTDQFVTRKDFDDLKKDILKEIKKGAQEAPKRWADVVAKASPSKIGATLQ
QPPTTTKKFVPSNLERQLTIKGATIAAEFVNRSNEDTKTTLATCLGKKKPGLVVRAATRMPTTGDYVIVFDEPTRTWCWR
NQAWAKEVFGPDAFITMSTVGVLVRGVPWDSVDNYTTAEAISNVAKERNPEASIIRVRPWKRRDGESRGLLLVEVATASA
ACFLQDNLFLWDGGAYPCEPFQASSNVQQCFRCWGIGHTARFCRQDDICARCGEAKHEGDRFGEVNCPSNDDKSLVYCKP
CGKKGHCAYNRKECPILRKAIAKASVAHAERPRAFAPARTQPERCWSRRQRLWTRVSCQTPPPAPVLLLPWRDMLEEAQR
GDGRER
>CINFUL2A#LTR/Gypsy 44-3994 via tfasty with RETROSOR1_SB, 1 stopcodon. [Zea mays]
MASFNDQAGAASDPKLVLPITGGSSSEPANKKQKKEAQRRVQHVGVQGPFIKSRWSHIPITFSQEDLQLKDYPHNDAMVI
SCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQELEDKIHDATHPLCGFGGRQIVALGKITMSVTFGFINNTRTEQVVFDI
VDMEYPYNAIIGRGTLNAFEAILHPAYLCMKMPSDQGPIAIHGSQEAARRAEGNWTDSKAIHNIDGAEACExYKFRREKA
ASADQPKPMLLCEDIAEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHSLNVDPSFRPRKQRLRKM
SDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLNKACPKDEFPLPRIDSLVDATASSELMS
LLDCYSGYHQIWMKREDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHI
ADLQETFASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGAQRLTGRLASLNRFISRS
AERNLPFFEVLKSAEVFQWGPIQQKAFEELKQYLIDLTALTPPMPGAPLLLYVAASHSAVSAALVQEKLDGQTRKQVPVY
FVSEVLSISKKNYTELEKVLYVVLMASRKLRHYFQAYNIIVPSSQPLKDIMRNREATGRIGKWAAELNEFCIEYVHRSSI
QSQALADFIADWTPGAQEEEANKDTEAWTVFCDGSWGTFGAGAAAVLVSPSKVKTCYVAKLDFSCTNNIAEYEALLLGLR
KLKAMGIRRAVLKTDSQVVSGHIDKSCKAKDPKLEKYLDMVRRVEASFEGFSVKNIPRGQNEHADLLAKSAAQGLPLPSD
VFFETIKAPSVELLERAVLNISPVYSEDWRTEIISYLQGKFLSDDEAYNRRIEARARPYVMIEGELYKHGVCAPLLKCLS
RTEGIELMKEIHAGLCGSHIGSRPLLGKIFRQGFYWPKAASDAAELVQKCEGCQKCARDQKQPSSLTQLIQPIWPLQRWG
LDLLGPLPPAQGNLRYVVVAVEYFSKWIEAKPLATITSATVQKFFWQNIVCRFGVPKAITVDNGTQFDSEAFRDFCDQIG
TKIHFASVRHPESNGLVERANGIIMTGIMKSIFNQPRGKWPDQLTKVVWSHNTTTSRSTGFTPFKLLFGDEAITPEEAKT
GSIRVVASAASGSEADYSVEKDALEGIRLQAVENINKYQAETIKWRDRKVRLKNIEPDTWCFRRVANPETVGKLQLKWDG
PFLVASSSRPGSYRLKDMDGNDIPRSWNADELRRYYV
>Idefix_env#LTR/Gypsy 4060-5592 [Drosophila fruit fly genus]
MINISKKQIVAGRSFTISQNLRNRKSLIRANMIIPDQPKKHKVHNILLIMLSCILSLIITVKCNNIEVNPVNAKNGYLIF
QTGTMEIPTSYEYHYLSINITKTMLMFEDIVSEANNYPNVPQIQYLVDKLKREINGLRIISRSKRGLLNVVGKAYKYLFG
TLDEDDREELEEKINNMSEDSVKTHDLNTILDVINSGIDIINKLKVDKEQHQQIAVLIFNLEQFTEYIEDIELGLQLTRL
GIFNPRLLKHDYLKHVNSEKMLKIKTSTWLKTDTNEILIISHIPSEVTKVPIFQIVPYPDEHNYILTEQIFDKFYIFDNQ
VFHKDTNRDIFDKCIIGIIKQEQTQCKYIKTHKNYQINYIEPNILLTWNIPETAVNQDCTHNKILISGNNIIKIKNCTIQ
IDEFLISNNLADFTQTIYITNNVTRLEPINHLQTREMIETHVKHYNFFQIICITTFVIMIISLTLYVAYKFKNIPKKIIV
NIVSKKNTRTLKIMSMKIFNKEIILPYTQI
>MDG3#LTR/Gypsy 30-4514 [Drosophila fruit fly genus]
MDDKIILNDFSLTTLKDWLRILGQNTEGTKTELIARLQDIPTAVRGDCPPEHPQKNAPPGNDIFSSLDFQNCEINTDHVS
VNAMNRKESTETGSERETNMFELQQLRAELAEAKAMLNGTRSSLQFQEQQQPEQSKATVSSVIQTAQFTQAGATKENTTF
HSPQRSNERAESQRFPVDALALAKETITDYDGKTCARAWITVVKNIARTFNIDDNHLRILLITKLKGNAQVWLHAHPARL
IEPIDNLLDQLSLTFGEQSSKAEIRRKFESRKWKTEENFCSYYDEKMALSNGINIDDDELLDQMIEGIPLQNFRTQARIQ
CFSTPSEMLRAFSNIRLPARREPPVQPTDYKDAIRCANCNSRGHKADICKKPKREPGSCYACGQLGHLVAQCPTRKSVSS
NNYVRWFKINFFENAYKPIISECLIDSGSPISIIKKSLINETMKLALVNTCYFGLNNCILKTHGQTTCYVLKGSIKIYFR
LIIVCDQSMRYNVILGRDFLTACNLNLDPYTLGMIALRKPMEINKISMFTENDSPEKSLENEIVSPKSLENEIVSSQSLE
NEIVSPKSLENEIVSPKSFKNATISPKSLENKIVNQQHKETGPISLRDEIVNQQKNVSKSKLSEDEIVNTSKEIVSFKLP
KDKNVYEQLNHNFDKEVLRICHVTESELEYKIGENVSNRLQLEFDRLFRNFYINAKRPNEPTVRSEIQLCLKNPKPFSCS
PRRLSYTEKDRLQKLLDEYLENGFIRPSDSEYASPIVLVKKKTGDLRMCVDFRKLNKMTMKDNYPLPLIDDLLDRMNEKT
VFTKLDLKNGFFHVHVKKESIKYTSFVTPLGQYEWLRMPFGLKNAPSVFQRFVNKIFADMIRENKVVVYMDDILLATENI
NEHLETLKEIFKRLVENKLELRIDKCEFMQSSIKYLGFIINKDGIMPNDKGIEAIKNFPIPNNVHTVQSFLGLCSYFRRF
IKDFSRLAKPLHDILKKDKPFKFGSEEMICFNMLKDKLIQSPVLAIYNHKHETELHCDASSSGFGAVLMQKKEDQKWHPV
SFFSKRTTDIESKYHSFELETLAIVYSLRRFRVYLHWRTFKIVTDCNSLILTLSKKELNPRIARWALEFQGYDFEIVHRA
GSRMQHVDALSRCTNIMVIQTNSFEDNLVICQGKDTKLKEIRQLLENTENKLYEMRNGIVYKKTNENRLLFYVPIEMEEQ
VLYKYHNELGHVGRDKMIEAIMKNYWFPNLKQKCSTHISNCLKCISFSPKTGKTEGFLHNIPKGNKPFEIIHIDHYGPVD
LARPKKHILVIVDAFTKFVRLYATKTTNTKEVIQSLNDYFRAYSRPKCIISDRGACFTSGDFDSFLKECNVKHIKIATGS
PQANGQVERINRSLGPMISKLIEPDQGLHWDLVLEKVEYTLNNTLHRSIKQYPSIMLFGLQQKGQIMDELKEKIEEIGET
IEERDLESIRNKGEASQKIAQAYNKEYVDKKRKRSGVFTKGTTSWLKILTQQQA
>Gypsy-50_Croc#LTR/Gypsy 90-4234 [Crocodylidae]
MAAYIGTTGAYDSTLEDWPTYIERLEQFFEVNEIPPRKHVAALLSLMGGKTYSLLRSLLTPEKPASKTFKELVKIVQEHL
APKPLIIAERFRFHKRNQLEGESISSFATELRKLSEHCNFKDGLNEALRDRFVCGLLNEAIQRKLLTEEDLTFKRAVEIG
IAMETAAKDAIELHGGVPMEIGMNELLNMQRKSQGRQQPDVCYRCGKGSHTPANCWFKERYCRSCSKKGHIQAVCRAKRN
KEESTVRYRKGNKKVYVIDRDSSDTDSESGVASLGLYHVNKGDKSAIWLTPRVAGKTLKMELDTGSAVSVISYSEYEKTF
KNMKLKETPVLLKTYTGEKIVPKGVMSVPVEYNNKRRLLDLYVIEKGGPALWGHEWLKEIPLDWNCVKMLQALSKVPAET
VKQQLEGILNQASEVFREGIGTLKHIKARIMIDENAQAKFHKARPVPYSLRAKVDAELDRLEREGILSKVAWSEWGMPIV
PIVKKCGAVRVCGDFKVTINPVLKVDKYPLPRTEDIFATLAGGQRFSKTDLAQAYLQMEVEEDSKVYLTINTQKGLYQYN
RLVFGIASAPAIWQRAMDQVLQGIPRTQCYLDDIIVTGENDEEHLRNLKRVLERLEEYGLRANRAKCEFFKESIAYCGHV
IDAQGLHKSQEKIKAVLEAPQPKDVSQLRSFLGFINYYSRFVPNLATVLYPLNCLLQTNRKWVWSRECQKAFLEAKRLVT
SDRVLVHFNPSLPIKLACDASSRGIGAVISHTMADGTERPIAFASRSLTAAERNYAQIDKEALSLVWGVKKFNQYLYGRK
FTLVTDHQPLVSILHPKKGVSGTSAARMQRWALFLAGYTYDIEYKRTKAHGNADGLSRLPVKEPSVVETESTEIVNLFQL
EYAPVTCSMIGQETKKDPTLAQVYEATLKGWKYTDNPNLAPFYACKDELTIHQGCVMWGIRVVIPSKLRTRILEELHVGH
LGVVKMKALARSFVWWPGIDQQIEHLVKECMGCQQVQXMPKPAPLHPWEWPSIPWQRLHIDFAGPFLGMMYLVVVDAHSK
WPEVFCMKTVTAAQTVEKLRSLFARTGLPEQVVTDNGPQFSSDEFQGFMKKNGIRHIASAPYHPATNGLAERFVQSFKNA
LLSMKEEAGSVQQKMACFLLAYRNAVHATTNETPAMLFMGRNLRSRLDLLKPDLQQHVRNRQISQAMTRGTGAPRQLHVG
QKVLARDYRGLNKWQPAVVSAQTGPLSYAVQVAPNIVWRRHIDQLRDTGVTAEQSTXATVGAPPVVGPPALQPTATTSNA
TPESSNADRPGPNNAEQPTSDEETSESDMDEGRPPPQDCVQGSGSHYPGRKRKHEPDIVVGAAHSQGSGQEGDRRYPERK
RKPPERXAVCALCHCHFKRGGQ
>LINEJ1_DM_pol#LINE/Jockey 2048-4798 [Drosophila fruit fly genus]
MTQPTLKIGLWNARGLTRGSEELRIFLSDHDIDVMLTTETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHS
PLTPISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKMLQE
VIAHGQYQVLATGEPTFYSYNPLLTPSALDFFITCGYGMGRLDVQTLQELSSDHLPILAVLHATPLKKPQRVRLLAHNAD
INIFKTHLEQLSEVNMQILEAVDIDNATSLFMSKLSEAAQLAAPRNRHEVEAFRPLQLPSSILALLRLKRRVRKEYARTG
DPRMQQIHSRLANCLHKALARRKQAQIDTFLDNLGADASTNYSLWRITKRFKAQPTPKSAIKNPSGGWCRTSLEKTEVFA
NNLEQRFTPYNYAPESLCRQVEEYLESPFQMSLPLSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALI
FNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTP
EQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKRLFPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAA
GVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAE
KCANVTFANRTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIY
KSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNSL
ARKLGTAAVVNADPRTRVKRRLKRHHPHDLPNLVLT
>DEA1#LTR/Gypsy 1-2614 (fragment)  [Ananas comosus]
LDREIEFVIDLVPGTTPISKAPYRMAPAELRELRAQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCVDYRELNKVT
IKNKYPLPRIDDLFDQLQGSCVYSKIDLQSGYHQLKIKPEDVSKTAFRTRYGHYEFAVMPFGLTNAPTAFMDLMNRVFKP
YLDRFVVVFIDDILVYSRSDADHEEHLRIVLQVLREKELYVKLKKCEFWLREVAFLGHLISGSGIAVDPKKIEAIKDWPR
LTSVTEIRSFLGLAGYYRRFVERFAKLSTPLTRLTHKGVKFIWNDACERSFQELKQRLTTAPILTLPVAGAGYVVYSDAS
LNGLGCVLMQDDKVIAYASRQLKEYEKNYPTHDLELAAVVFALKLWRHYLYGERCEVYTDHKSLKYLFTQKELNLRQRRW
LELLKDYDLTILYHPGKANVVADALSRKSMENLAMHVVTQPRLIEQMKRLELEIVTPDTPMRLMTLVVQPTLLDRIKEKQ
ASDVELQKIKGKMVDGCTGDFTLDGDGLMRFRGRICVPADSGIKEDILQEAHRAPYAIHPGGTKMYKDLKLLYWWPGIKK
DVGEFVAKCLTCQQVKAEHRVPAGKLQSLPIPVWKWEKITMDFVTGLPRSQAGHDAIWVIVDRLTKSAHFIPIHTTWTGE
RLAQVYLDEIVRLHGVPTSIVSDRDTRFVSHFWRSLQDALGTRLDFSTAFHPQSDGQSERTIQTLEDMLRACVIDFQGGW
SQHLPMAEFAYNNSYQASIKMAPFEALYGRKCRSPLHWSEVGESLALGPDVLQEAEVKVRIARERLLTAQSRQRSYADRR
RRDLEFQVGDHVFLKVSPTRGIKRFGIRGKLSPRFIGPYEILERVGPVAYRLALPPNLSGVHNVFHVSVVR
>Juan-C_gag#LINE/Jockey gi|403080|gb|AAA28290.1| DNA-binding protein  [Culex pipiens]
MRQNKGKRKSSEDLVVTSVKRLNRKPANANRKRKQPLLRSDSDSECEVNPPIPLTNSFGVLSETDDKEPSPRTEPSAVEK
RVKAPPIVVTSVSDLASFRTQLKNCKETCNLKVSFQLGRRGECRLLTESLQDHQTFVGYLKNHKHNFYTYETKNARPFKA
VLKGLSNDLSVDEIKNELKVLLGFAPSQVIPMKKKSNGNISRFGLTSQFYLIHFNRNEINNLKILDKVQFLFHVRVKWEH
FKKHGGNGQNLTQCRGCQAFGHGTDHCAMVPKCMVCGDSSHDKDNCPVKEVTQFKCANCGGNHKSNFWDCPIRKKVLDSR
AKHQPKSKPKFSQSQVVPASLNQTFVLSHSNNSRNTPTVEKLGNNNGISYANVVSGSSTNFKSSTNLSEIGQVPQISFEN
FSAGNALGSSDLGDVTFEKMTFLQNSLFGLIQTMSNATSMMEAIQIGLKFANDVVLTLKFNHGSK
>JuanC_pol#LINE/Jockey gi|1079026|pir||B56679  probable reverse transcriptase - house mosquito [Culex pipiens]
MDQSNSINIMNFNARSLKAKENEFFNFLRVHNVHVAVITETFLKTGTYLKSDPDYKVRTNNRMNRNGGGVAIVIHRSITY
STLRYFKLKVIESLGIELETSFGKIIIAAAYLPFQCTGENKNYFKGDLNKLTRHRSRFLIIGDFNAKHQSWNNSKVNSNG
KILFRDCTSGLYSVLYPNGPTCFSSVRNPSTIDLVLTNQSQYCGPLVTHADFDSDHLPVTFSLSHEAVTRPNSSVFNYHK
ANWDRYQHHIENNFNHDFVLETKADIDSALESLTNAILDARNIAIPKVQVKFDSPIIDDDLQLLIRLKNVRRRQYQRSRD
PALKRIQKDLQKVIDHRFTLLRNEKFARDVEQIKPYSKPFWKLSKVLKKPQKPIPSLKDGDNILLTNGEKAQKLAQQFES
AHNFNLNVLSPIENQISIEFQNIVEQEFSSDEVFNTDLNEIKSIIKQFKNMKAPGEDGIFYILIKKLPEANLSCLVKIFN
KCFDLAYFPSSWKNAKVIPILKPDKNPAEASSYRPISLLSSISKLFERIILNRMMTHINENSIFADEQFGFRLGHSTTHQ
LLRVSNLIRSNKSEGYSTAPALLDIEKAFDSVWHKGLIAKLKRFNFPIYIVKIIQNYLTDRTLQVCYQNSKSDQLPVRAG
VPQGSILGPILYNIFTSDLPDLPPGCQKSLFADDTSISAKARSLRVITRRLQKSLDIFNSYLKEWKITPNVLSKTQLIIF
PHKPRADFLKPKSHHIIKMNEVNLKWEDQVKYLGLGFDKNLTYKDHIESIQVKCNKYIKCLYPLINRNSRLCLKNKLLIY
KQIFRPAMLYAVPIWTSCCLTRKKKLQRIQNKILKMIPKLPPWFSTSELHQLAEVDTLDVMSNKIIDAFRQKSLQSSAAL
IRSLYSL
>TRANSPAC_gag#LTR/Gypsy 341-1273 [Drosophila fruit fly genus]
MNENSLAAFNSTMNCIKLIQNFDGTDTNQLPDLITQIENILPSFDVFDTNTKNILFGFIKNKFVGLCRPVIHRHGNMTEW
ESFKRVILKNFGEKETSDVLMDMLKLCRVESTIEEYYNKINEISNRVHNRILIHDDKTYTTLEVNRIALRVFRDNLPEPT
KTLIFARNPNSVEDAYKIIEDARHQSYTLYGPIRRNNRYNKPNFRTNFSNDNRNVNEPVVTERSLDEANRFQQNNVEQQE
NSRTEGTPRVNNRRQGYQYQSNNSSTSNSARVSTNSRNVQSSEQSRRSFEPMDINQSSVNFQIEDQDEYHI
>Ulysses_pol#LTR/Gypsy 2700-5891 gi|103519|pir||S18211 [Drosophila fruit fly genus]
KLSGKPQRERGDGGTDAFRDGDRGKAGEGHLPEPIIIGKETEIWNKDQDKANYNNSISKGGTLRGLPYEERVRAYMSARN
RIFGERQLEGMTLATRRMVKARARFRRRRITRRQVVEAVRREESIDPRVFAEVEVAGAKMKGLLDTGASVSLLGQGCREL
VEKLGWEARPYESMVRTACMGANRPILGRVVLPVKYGIERLDIVFYMCPDLRQELYLGIDFWRAFEIAPELLGPARKSET
PPEASEVTVANPEVAYYRDDDDCVTDPEMWDLDNDQRSQLESVKRRFLQFEKDGLGKTHLLQHRIQLIEGAEPVKDRLNP
LSPAKQEIVWAEVDKMLKLGIIEESDSPWSNRTTVVMRPGKNRFCLDARKLNSVTVKDAYPLPCIEGILSRSTRLILSLA
STLSSRSGNRDGGEEQGVYGVYCTRRPLYQFRHMPFGLCNAAQHFEAHDKVIPANLRSNVFVYLDDLLIISADFPTHLKY
LELVAECLRNANLTIGMAKSKFLFRNLNYLGFIQLRRRTWRMDPGRVEAIRNIPNPRTVKELRSFLGTAGWYRRFIKNFA
EISVPLTDALKKRTGRFVLSDEAIEAIESLKLALTTAPVLVHADFRRPFFIQCDASHYGVGAVLFQLDDEQQERPIAFFS
AKLNKHQINYSVTEKECLAAKLAIHRFRPYVEMMPFTVITDHASLQWLMSLKDLSGRLARWSLELQAFPFSMQYRKGADN
VCRHIVRSVEEVELTPEDLLGFQTPEFESPNIEELIREVMSQQGKFPDLSSGRTDFSSRGTVHESLEDEVEGTSWKLWVP
ESLTAGLIQQATRRTRRSAHGGMRKTLHALARQYYWPNMAIQVRDYVRKCDTCKETKAQNYRMQVGIGEEVRTDRPFQKL
YIDFLGKYPRSKRGHAWIFVVVDHFSKFTFLKAMREATAADVVNFLVHEVFFKFGVPEVIHSDNGRQFVSKSFDAMVQAF
GITHLRTPVYSPQSNAAERVNRTVLSAIRTYLGQDHREWDAYLPEVEVAIRNAVHSGYGSHSVLRGLWTADVPEWFQLQT
GQEAVDHWPTTVFLTLTQRTDWL
>CZAR_pol#LINE/CRE gi|162249|gb|AAA30239.1| reverse transcriptase endonuclease [Trypanosoma cruzi]
MAHDSHQITEIRRRGGTGVRPLGQASDGGGGHPICDPPTASKRHGGKRTGGLVATNAPNHVVAYIPSALRKDTEWVMIDG
MVQKVQRKPLNTHKVILCLYRRLMPETGPEEDEEDDEQEPQARNREQDGRTLATAPKGSRRPQSQKWEEAPDDSSMVDGF
GKNGYGQPPGSATHSSPPASSSPSTQTITQDPFLTPIAPRKRGRRGEDQEEESEADGNKGGGIVCEEDEEGLLQPSVPPT
SSQPNQQAPQVHFLDEEEEEITLRRTQPQETPHTNKDDTPPHQQSSLPQEEVEMEEEGVGGDEGDSETPRDTTGQEDGGH
PFSHDKTTRLLDPVWCLAGGCHHKFSGPRRGEHLRSHIHAVHRKQERMDITNEALISQGLVRCDACGEVCSASLRARAAH
RPRCGQYTCRKENMATQREEYRASVTGSHYTKTAAFLERTPAVEWPTTPATDPRQDPWLQERVPTRRYLHKREWPNWLDV
CRTVMLGYNASAPEERSRKQVAIMDLVRQHLRLPENPRSRRQATRTNHDKQHTTDPPPDHCNTTTVVRGAMETTKDGEES
VSDETEQQDTTAHQPERILTASDIYKTRRVETLCTLQATGRAALLTAAEAEPVVFSPELVQSLDDLYPQEDTSLYPEPAV
SAPLVTFDSKELAKIIGSRLTRGAAPGLDGWTRELLYPLTKDKALLMEITAILTDMANGNVAPEVAHRLRATNLTVLRKP
NKKFPPIGAECVWAKAISLMAVDAVMPALKTCFKNLQYGVGNNIELAIQKIRRDFHLKGSVAMLDGRNAYNAISRTAILS
AVYGNTAWSPLWRVTRLLLGTEGLVGFYEKGQLVHSWKSTRGVRQGMVLGPVLFSIGTIATLRQLESSFSNASFTAYLDD
VTVAAPPGMLGKVCEATSRAMRALGIETNEDKTEVLNKGGPVDMPTEYIRPFARVLGAGVANDPESELITQFVQRKAEET
DRLFRAIVELPFAKHTQVRLLSVSALPRVTFLLRTHAPAHTRAAASGSTTASPASWASSWTAPSRSAHAHCGHPGAPGGC
GLRRQREIAEFAYACLGEKGKQRAMTDELDAKHQSDLYETLQGPDRKVFVSNTAAGAGRPLTDPQVHADDRGFSTYLRER
LLMRVLPEGQKCVCGADASNEHVHTCTRLQQNPRTTRHDMINMTFANGLRLCGFQCGMEPRLTEASRRRPDILIVGLDTY
AITDVTVTYAGRVTAYVSEESMEEADPLRAARDRLTQKRQKYRHWALANGLDFEPFVMLTNGAIHPASRRWLRRILGNQD
HRLTITNAYDMIVADTLAAMLRGNVHVFNAACAARAG
>RIRE2_p2#LTR/Gypsy #ReverseORF 8508-9404 R) [Oryza sativa]
MAEEKESFEGQWAPSNVTEENLKEMVAHGVLPAKEIIGWRPACGEAFPSPDTHEVVVFSHFFYGGFALPTSKFFRGILNF
YGISLHHLNPNSIVHIANFIHVCEAFLGIKPHFALFRRIFFLKPQPNKSKPCVVGGAGFQLRGTLSQKYFSMPFKTSNKG
WHANWFYIQNPEPALPEYSCLPPVYQDTWNSLPIGDEAAQALELMDRMLKLKEQGLQGEQITRHFIKCRLAPIKERSRTA
FEFDGKHDPNREEPDSLDFKIMKERMYKIFSNAIVVSYSHQLPVVPYNAFNPPPQVCI
>RIRE8A_orf1#LTR/Gypsy 557-1321 [Oryza sativa]
MPRHSPRNLIEVLGFVRELRLMAFEVGYEVAPEYRQIPHDPDKEKCRVRVTLASDSEDLPSFKFEAGGRSYCHACQEAAL
VAIGELRQHFEEELDSSAFQYHPHKPHGQDYGTYTCPDGEESATLMHAVHMLSAMDAVVVERDKAAHDRENWNRGKICKL
KSKVYRLQKELAELKGRTPLPTSKLRLTPRKRTCPPPRLQLASKIRVMGEAVPDHAEPVIDIISDEEEEEDPEEREPATP
EEEDTSLRPDARRK
>Gypsy_DS_gag#LTR/Gypsy 1187-2368  [Drosophila fruit fly genus]
MEPAQLLAIVEGAVRQALEQQQNQFQAQITALATQVQSLQVEAPQIITYEKISVDPDAKCDIPLDIIKSVPDFTGAQDEY
VAWRQAAIYAYELFKNFPKSTAHYQAVAIIRNKIKGSAGALLVSHNTVLNFDAILARLDCTYSDKTSLRLLRQSLELVSQ
GEMSLMQYYDDVEKKLTLVTNKIVMSHDQEGADLLNREVRDDALHAFISGLKKSLRAVVFPAQPKDLPSALALAREAEAS
IERSMFANSYAKALQDRAQIAEGNKVRAQGKPTRFNKDEQNQERNPHFVKRQKGWPQPQAPKDNQTEAPQPMEVDSSSRF
RQKTDYSKRQANESNAPKHKNSSDRSTGQKRQRVNNVVQTDSKEAVTEYDKSVNFLGNTPGFRTSNGGWLGEL
>PSLINE_gag#LINE/CR1 495-1499 [Platemys spixii]
MESERSAVVTCTGCAMFVFLPQDRXDFICTKCRLVSILEEKVKGLETQXSTLRCIKENEVFLDRXHDLLLQAQCEEDSEK
AXQGXLXNGEXNWQHVTSRXKRTHXPTVQIEVRNRFQALCTGXTAENDLQDSSEGMDQKEXLLIRRXGMHCPRDGGSTTT
TPKRKRRVXVVGDSLLRGTESSICRPDRETXEVCCLPGARIQDVTEXLPRLIKPSDCXPFLLLHVGTNDTAKNDLERXTA
DYVALGRRIKEFEAQVVFSSILPVEGKGPGRDRRIVEVNAWLRRWCRREGFGFFDHGMLFQEEGLLGRDGIHLTKRGKSI
FADRLANLVRRALN
>ERV3-3_AMi-I_1p#LTR/ERVL 76..1347[Crocodylidae]
MFTRRGKTTSLSELSRRVHPWMSSGARDFRSLAAVEGVFAQWQLGRKPGKTVLLEGAISLLWEVAGALLPPEDSTPESGG
ERQVAVANLVGGEEGQPAPPASGTEEETAPPESKPPPAELEVSAVMKPRYQANQEGPGFTLQDWEVVPWKPADFQVELAA
WVKDPKETWASWANRVMAQGPDKYFTPREAITVLTKIFPGEWYKSAQASQKIDPKVSGFYAYQLMGIALGTLEAWELTKD
RHAREPKWIDWLGAVWQLSGDAFIEAALGGTLDADTLRVVVTGAAWESTLRKGSGPLQGILLQRYDAWMNRPLAEIIKGL
QTLINLTGEHPKLKQVAVVRGLLTDLKKKIPRRQLWKELRERGIPIEQIDGKPTSELYQLWKDDKIRETTKDRRAVAAVP
SAPPEEEPETTVGLYPDLKNLHID
>LINEJ1_DM_gag#LINE/Jockey 300-2051 [Drosophila fruit fly genus]
ISIALYGISIKTIDIMENSFAQSRPSNGCDKFEKMRKVAGVEPGELRSQLRASCAVVSPNLEGMPTQSAVSSLMVTISSN
TNASVTCTISNVQANMICTPTYTDCTTVTTSICPTTPYDNGLPTPLSSLPNKPSKANCPFQAHDRTVNRKRKGVSQPPLP
ILTPSPSRKTKRQATMPLNEEASTSTAAALNNNRFALLSAEAENMEQDVSDADSDIEDSAARDGGGQSAKYSKPPAICVP
SVSDPVTLERALNLSTGSSNYYIRISRFGVSRIYTANPDAFRTAVKELNKLNCQFWHHQLKEEKPYRVVLKGIHANVPSS
QIEQAFSDHGYEVLNIYCPRKSDWKNIQVNEDDNEATKNFKTRQNLFYINLKQGPNVKESLKITRLGRYRVTVERATRRK
ELLQCQRCQIFGHSKNYCAQDPICGKCSGPHMTGFALCISDVCLCINCGGDHVSTDKSCPVRAEKAKKLKPRSRLPMTNN
IATLKPPQRSSSGYIPAEALRTNISYADIARRNTTQSRARATVQAEVIPTSDNSLNNKFMTLDNSIRAINTRMDELFKLI
HETVEANKAFRELVQVLITRIPK
>BURDOCK_gag#LTR/Gypsy 289-1782 [Drosophila fruit fly genus]
MSDSDNLLDNLVSSLNKWSAHQASRQNSAEKNNKSSDNWWSKTKTTSEMEFEAQLKAIVESAVAGALAVQKQSFEKQLQE
MNERIGKLTVNTPEVETYVDAEIRPGVVCSEPLDILKSLPDFDGKSETYVSWRKAAHVAFKVFKDYEGSSTFYQALGIMR
NKIKGPANTVLASFNTPLHFKAMISRLDFTYSDKRPIYLIEQELSTLRQGDMTLTEFYDEVEKKLTLLTNKTIMTFDSAL
AMSLNEKYRTDALRVFVTGAKKSLSDILFAKGPKDLPTALALAQEVESNHERYQFALIYSKNIGDRGQKIEQRHSDKDRN
SIMPMQTKNPYFSKRQVHTYDNQERQDPVQLTNPDVSMRSRRTGNFGQTPFPTQGNIWPSQQQNSWPSQQQYSWPSQQQN
SFRTQNQFASQPQQQNTSQAQGHFGYAQASKRPTSGSARFTGPKQQRINYLPHEKGQCEEDTDGYQKEAEAEVDDYEDEL
VNYDHVHFLATNPCYRT
>CFT1_gag#LTR/Gypsy 639-2558 gi|6650018|gb|AAF21677.1|AF051915_1 gag polyprotein [Passalora fulva]
MLSMPWLLIQATNPQGWQPEFFYGDRVKFDTWVSQMDMYFLFNSMTENLKPIFATTFLRGRAQHWVKPFLRKYLDSNGED
NADGVFKSYNHLKHAMKSVFGVSNEIATAVRVIQHLTQKTSTAEYAAKFQEYAQLTDWDDEALQVMYRRGLKEHVKDELM
RDGRKIDGLGDLVQVTIDLDDKLYERAMERRYDSKVSGKAGYTPGYDNRNRGFNDNYNKPKDKPYYGPQPMELDVTEKGR
KIRNSKGNRRPPSSRETRTCYGCGKPGHIARDCRGKNMVRREQFNMMQRRTSKSESSVESLGDIDYTRRVEERASNGSTE
PLLDPSQGRGGCHGQQMVVIPFELQNQPRQFNMMARRVDYEIESESRNGHGSLHWRFCYQDSCQVHYSAKSGAGYWPQQP
RGTLGATHRQDATLQEVDIDESCFDDDGSDKENQDPGWNGSWSPEPQEESQETTGLDTIEEDQDPEESSEEDSSEGEESD
TDDDNEQMTFTVDAPKKLYDMIIHLQRRHEEFLPRIGGRRMLHSIEFDKTLDTLRGMAWGYPLMETTENLATAVTERPPI
GSRMIGTGYLTPSGTFVSNELRNMVQHARALYSETQKIQERHRVQMWTQKGSRQVQAEASRHEARRSTYEQGKGSTPQE
>DM297_env#LTR/Gypsy 4731-6146 [Drosophila fruit fly genus]
TLNFTGTWYPITLLFILITAVHGQQIQINNIDTNHGYLLFSDKPVQIPSSFEHHSLKINLTEIDIVVDYFEQRLRTDYHA
PQINFLYNKIKRELARITLKHRNKRGFINIVGSGFKYLFGTLDENDRVEIQKKLEINVHNSVKLHELNDAIRLINDGMQK
IQNYENNHTIIDSLLFELMQFTEYIEDLEMAMQLSRLGLFNPKLLNYDKLENVNSQNILNIKTSTWINYNDNQVLIISHI
PIYLSLISTIKIIPYPDSNGYQLDYTDTQSYFEKENKVYNTENKEVKNECVTNIIKHLNPICNFKPVHTNEIIKYIEPNT
IVTWNLTQTILNQNCQNSINKIKIEGNKMIRVTQCKIEINNINFSETLLEPEIDLTPLYTPLNITKIKIVKHNDIIEMIS
ENNITLYIQMIIVIIALILLYSYLRYVSFKPFMMLYAKLKIRKNQNQNTPQQTEIEEIPFPTLYPSIPAQV
>DM297_gag#LTR/Gypsy 389-1633 [Drosophila fruit fly genus]
MSQPIIALSDINLAEARRQLKDIMPFKGDPETLHTFISRVDYVISLYQTNDVRQQRILLGAIERNLDGQITRSLGLPNVE
DWPTLKARLIAEFKIQTPNYKLLENFRETPYRGSLRAFCEEAERRRQLLISKLHLEGNQSDFLIYIQGIKESIKILIRKL
PIQLFTILAHHDITDLRSLITIAQNEGIYEEHINFEFYEKPEYRNKNSNSNQNSKTQKFNTNVQTQNRPSYSQYSQPFQP
NFNQYIQPFRPSYTQQITNNPPMWHAPNYFRPNQYINPQPIIQKNHFQQYPNKAQFPQTTHFRGNTYPRLQQPSTYKNTN
FPITKRLRPSDSEQTKMSIDEIRFQDAHEFEQVQPNYYEQQYFNQNQYNPYQNHSFINEGQQQVQFVQINNKQNQNNSEL
NENFRLTVPENTNT
>GYPSOR1_gagpol#LTR/Gypsy 1654-6108  [Sorghum bicolor]
MFIYLGMQMAARGRGRGRGRGSGNDNGNGGNAPITVEELMQTQNQMMHVFMQHLQQQPPPTPPPIHVRDKRGEFMKGRPP
VFTHSADPMEADDWLRAVERQLNIAQCNDLEKVLYASGQLQGAAQTWWESYQAARPNNASPVTWLEFCRDFRARHINEGV
MELKQEEFRSLRMGSMTVAEYHDTFEQLARYAPNDVREDADKQRLFMKGLYYELRLQLAGNTYPTFQALVNRAIVLDNMR
KSQDKKRRMLAQGSGSNNRQRFSSHQGHQQRFQGPVSQWNRNQQPQRFQNQSQSGNQRPPFQQRNHNQQQHGQQAPRPGN
PNANSTKRSASNTPTRCFRCGKEGHMSYDCPEKFNPQYNDRRSTPNSAKVNNVAAETVQEGPEIMMGTFSINSIPATVLF
DSGASHTFISQAFVRVHSLPLVAMNTPMLVNSPGGTIPVSLRCPSASLSLRGVDFPISPMVMRTSGIDVILGLDWMKQHA
TNINCKERVVVLTTPKGERISVDVTMQAPLAAKVNQLTDDVDPQNLVVDEFPDVFPDELPGMPPDRDIEFIIELLPGTAP
IAKRPYRMGVKELEELKKQIKELQDKGFIRPSSSPWGAPVIFVDKKDGSQRMCVDYRSLNEVTIKNKYPLPRIDDLFDQL
RGACVFSKIDLRSGYHQLKIRNSDIPKTAFTTRYGLYEYTVMSFGLTNAPAYFMYMMNKVFMEYLDKFVVVFIDDILVFS
KTKEEHAEHLRLVLQKLREHKLYAKRSKCEFWLEEVSFLGHVVSNGGIAVDPSKVKDVLNWKPPTDVSEIRSFLGLAGYY
RRFIEGFSKLAKPMTALLEKNAKFVWSDKCQASFEEFKKRLTTAPVLVLPDLSKSFSIYCDASRLGLGCVLMQEGRVVAY
ASRQLRKHELNYPTHDLELAAVVHALKIWRHYLIGHKSDIYTDHKSLKYIFTQTDLNLRQRRWLELIKDYDLEVHYHPGK
ANVVADALSRKKYANELQATPESEELCAEFAYLNLGMVVNATEIEITPTLEEEIVKGQLEDEKLKEIAQNVVLGKAPGFR
IDDNGVLWFGKRICVPEVKAIRDTILREAHESAYSIHPGSTKMYLDLRQKYWWYGLKRDVAEYVALCDTCQRVKAEHQRP
AGLLQPMKIPEWKWEEVGMDFIVGLPRTQRGYDSIWVIVDRLTKVAHFIPVKTSYSGDRLAELYMERIVCLHGVPKKIVS
DRGTQFTSHFWKAVHDSLGTKLNFSTAYHPQTDGQTERINQILEDMLRACALQYGTSWDKSLPYAEFSYNNSYQQSLKMA
PFEALYGRKCRTPLFWNQTGETQVFGTDVLRHAEQQVRTIRDNLRVAQSRQKSYADTRRRELAFEVGDYVYLKVSPMRSV
KRFNMKGKLVPRYVGPFKVLERRGEVAYRLELPESLSGVHDVFHVSQLKKCLRVPEEQLPLEELSVKGDLTYEEYPVKIL
ETAERVTRSRVIRMCKVQWNRHSEAEATWEREDDLRKSYSYLFE
>L1_MM_gag#LINE/L1 946-2016 [Mus mouse genus]
MAKGKRKNPTNRNQDRSPSSERSTPTPPSPGHPNTTENLDPDLKTFLMMMIEDIKKDFHKSLKDLQESTAKELQALKEKQ
ENTAKQVMEMNKTILELKGEVDTIKKTQSEATLEIETLGKRSGTIDASISNRIQEMEERISGAEDSIENIDTTVKENTKC
KRILTQNIQVIQDTMRRPNLRIIGIDENEDFQLKGPANIFNKIIEENFPNIKKEMPMIIQEAYRTPNRLDQKRNSSRHII
IRTTNALNKDRILKAVREKGQVTYKGRPIRITPDFSPETMKARRAWTDVIQTLREHKCQPRLLYPAKLSITIDGETKVFH
DKTKFTQYLSTNPALQRIITEKKQYKDGNHALEQPRK
>BLASTOPIA_gagpol#LTR/Gypsy gi|481446|pir||S38635 [Drosophila fruit fly genus]
MFTRTPPTNKKLNTDQIQAILENESEDESRKEKMNEEDQKLAPVGEAEAKKQNKDASAKVEEKFEQMMNTLTQSMLAKSK
QEGQVIIAAEKFEKVVSDCDGKSIPIKKWFEIFEKNAEAYELSEKQKYVQARSKMIGSAELFLESECVSGYTELKELLIE
EFSGSYNSAVIHKKLQDRKKKREETLHDYLLQMKKIAALGEVETVALITHIVNGLDIKKEYKGAMLRCKTLKELKQEFEI
YESLNIVDKPNIQPKPKQITQGVKADHCFNCGSREHKRKDCTLPTKCFSCNQEGHISSKCPEKVNSMRIHVDSARTKPVI
INGIIINCLVDTGSDVTIIKEAIFKKMKDVDLNRTATVLRGLGNASTQPIGCFRALIKTDQVEASHNVLVVHDSKFSCDG
IVGHDFISKFRLICSAEGYTFLDLEADKKQAVEYSQMFNICEESSFTVAPQYREDVERMIERTYETPPKQIKQCPVELKI
IPDGVIKPFRHGHTRLSEEEAIAVKKQVEEWVEQSIVRKSTSNVASRIVVVRKKDGTLRVCVDYRKLNTMVLMDCFPVPI
MEEVLEKLQSAKWFTTMDLQNGFFHVAVEEASKPYTAFVTREGLFEFNKAPFGFKNSPAAFIRFVQFIFQELINSNIMQL
YMDDIIVYAATPEECMEKTEMVLKRAAEFGLKIKWKKCNFMQRRIHFLGHIIEGGQICPGKEKTSAVNSFGTPQNVKAVQ
GFLGLTGFFRKFIPGYAQIARPLTDLLKKDAIFNIGPVEQQSVNKLKEILVNEPVLRIYSREAETELHTDASKDGLGAVL
LQKFEGSFHPVCFWSRKTTKAESNRHSYYLEVKAAYLALKKFRHYLLGVPFKLVTDCVAFKQTTKKADVPREVGPWILYM
QDFNFQPEHRAGERMRHVDFLSRHPQACMMITSELTARIKKSQQNDDSIRAILEILKDRLFQPYKLKGGLLYSMVNGNEL
LVVPALMEREVIQSAHEVGHLSLQKTMHSIQQQFFYFLIWEYKVKKLISNCIKCIIHSKKLGKQEGYLNCIDKGDAPLHT
LHIDHLGPMDSSAKQYKYILATVDAFSKFVWLFPTKSTGQEEVVKRLTDWSNIFGFPKRIVSDKGTAFTSGAFEQFMSSH
NVEHVCTTTGVARGNGQIERVNRLILAIISKLSSDEPSKWYKYVPEVQKAINCHVHSSLKLSPFEVMFGTKMYTRVEDRL
LELLQEEVVCQFNEDRYEMRQLVKRNIEQAQKDYKRNYDKKRRAEYKYKAGDLVAIKRTQFVAGRKMASGYLGPYEVTGV
KDNGRYDVKKAANVEGPNVTSTSCDNMKLWKYIAENADLLSSGSDDDDQEGRM
>L1-8_Cis_pol#LINE/L1 1144-4694 via tfasty with L1-7_Cis_pol, 1 frameshift. [Ciona savignyi]
MECQFSLPNKMECIVEQTTSIIIGTININGIRNKAQNITNYMRLNKIDILCMQEVHATTPNYTEKIESMTGSKFFTNTIT
DIAQNYKTFRRGTGILIKNHILSKYNIIHNIIITNHIHSVTLYEKNNIINVYNIYLTSGARWPNLIERKNQIDYLHNALE
NKINEQNYLLGDFNFILSPTDKQGKFDKKKNLDRKKWEILQKEFNLTDVHLKIKKNKIIFTRITRSKSSRIDRIYANEVA
LKNVVGIEYIRNFFSDHNNCPAIKIKLISNKRWGPSFYKMNKSIINNNDIMDIINIRWNNWRKQKRKFGKIEEWWEKGKI
MVKEEIQECSQRIRRYEKQRYFTSLIKIKQMENNRNILTDNINLIQIKNNINNFEKKLNRGALIRSKIKEVEREENPTRD
FFQYENNKQKREAIYKIKINDRYITQTPQETIMATYKFYHELWGQIPVTTNQNEYLKGIKAIDLDKEEYKVLNQPINAAE
IKIAINNLNKNSSPGCDGIIPDFYLQMGEPIINDLCEIFNNLTFSNKMPISMRTGIIKLIYKKGDKLDLRNWRPISLLNT
DYKILSKIINNRLSIVIDKIISSNQKCGIKNRTIDQGIYNIQSAIESAKYFNKNLTVMSIDYEKAFDRIDHDFIFKILSK
LNIPKYLINLIKILYKDIQSKIEINGAFTKPILIKRGIRQGCPTSMTLFLIGVEILTRKINLNNNIIGYKLGHIEYKLEQ
YADDVTILIGNNSSLPHIQKELINYQKVSGQIINQNKTQFMSNDPCINQSINAINMGQNNVDVIKILGIYFSFKYNCNKK
NWEKAELGIQRALIIHSQRKLTLTGKCSLIHAIIIPQLIHPGKHIIISKQSIKKINGLIFKFLWSSKLEKIKRTKLIAPI
DSGGRNIPEIESKVIAAKMCRLYELSKLEKIETLWHEWIRFQLGSTIKLLNSKLYTNSLPNASEPNALHRLIRHNYYKLK
RNDFEFTTNKLYPIYQILIKEKITANLIEVNDCVIPWNKINLNGNNVKQYFNNIERDNNYKIANNAFFFGEFFKTRSCSN
IYKGKVIKRNCKFCRGPTDSIKHIFTECPIIIPILNYLIYQYSNKIFYHKTKLTKSLILYNCSDRLQHNEIGAIKLLTIA
KLEIINYKIHLDLRNTYLWNNIEFTRKTLWIVKNKFKIFIRKLCLQQGCERVITQLQILPEIEI
>DM412_pol#LTR/Gypsy 2566-6279 [Drosophila fruit fly genus]
QQSEQLQQKQCQCTSNPRTGQLATAFRYSVEEDRRVYTINYNLNIFSTFIHAKTGVKLVFLLDTGADISILKENSDKFSN
IQITNKINIQGIGQQKIQSRGQTFIEIQTGKYVIPHDFHLVDKNFPIPCDGIIGIDFIKKYNCQIDLNQEEDWFIIRPNN
LKFPIYIPIAYSSGINTTLLPARSQVVRRLIVSSKDDNILIPNQEIQTGIYVANTIATSSNTFVRILNTTDSDQLVNMDT
LKYEPLSNYNVVQANSEHRNKTVLSQLKKNFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRLKDDEPVYTKNY
RSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQL
GRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIG
CSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYY
RRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQL
PVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEY
LKGKDNHVADALSRITIKELKDITGNILKVTTRFQSRQKSCAGKEQLDLQKQTKEIASEPNVYEVITNDEVRKVVTLQLN
DSICLFKHGKKIIARYDVGDLYTNGILDLDQFLQRLELQAGIYDISQIKMAPWKKIFEHVSIDKFKNMGNKILKNLKVAL
LNPVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITET
PEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSI
ITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTS
NLPKHFNKLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLRNEVGHKLDFKY
TGPYKIESIGDNNNITLLTNKNKKQIVHKDRLKKFHS
>BURDOCK_pol#LTR/Gypsy 1719-4844 [Drosophila fruit fly genus]
GRTSELRSCSFFSHKSLLPYIEREIAGRTIKLLIDTGASKNYIQPLPELKNIMPVQNKFTVKSLHGCNTVKQKCFIKLFN
TSVQFFILPSLSSFDAIIGLDLLKQGNATLDFKNKTLNINNEVESIQFLRCDSVNFANIENIVVPNQISNKFHTMLRNRL
AVFAEPEEALPYNTNIVATIRTEDDQPIYSKLYPYPMGVSDFVNKETHALLKDGIIRPSSSPYNNPVWVVDKKGTDEEGN
TKKRLVIDFRKLNLKTIDDKYPIPNVVWILSNLGKARFFTTLDLKSAFHQILLAEKDRAKTAFSVGNGKYEFCRLPFGLK
NAPSIFQRAIDDVVRDRIGKSCYVYVDDVIIFSNGIEDHVNDVAWVLDRLSGANMRVSKEKSFFFKESVEYLGFMVSSGG
ITTSPSKVEAIQKYNQPTNLFSVRSFLGLASYYRCFIKDFASIARPLTDILKGENGKVSASQSKKIPISFDERQCSAFEK
LKNVLVSENVMLLYPDYRKAFDLTTDASAFGLGAVLSQDGKPVTMISRTLQDRELNFATNERELLAIVWALKSLRNYLYG
VKNLNIFTDHQPLTYAVSDRNPNAKIKRWKAFIDEHNAKIFYKPGKETYVADALSRQAIHVLEDEPQSDIATIHSEISLT
FTIETIDKPVNCFRNQIVIDEGTADSTRTFVIFGSKTRHLIQFLDKETLIGRIRDVVKPDVVNAIHCELPVLAFIQNSLV
NDFPATTFRHTMKMVSDIFNQTEQREIVSLEHNRAHRAAQENVKQILQYYFFPKMSQIAATFVSNCLVCQKAKYDRHPQK
QILGRTPIPSHVGETLHIDIFSTGRNYFLTCIDKFSKFAIVQPIGSRTITDLEPAIMQLMNFFPHSKTIFCDNEPSINSE
SIKSLLKNRFNVDIANAPPLHSTSNGQVERFHSTLLEIARCLKLDSGMNDTVNLILQATIEYNKTVHSVTNRRPIDIIHS
TPPELANEIVEMVNEAQEKQLRRENVTRRDRTFEVGETVMVKQNNRLGNKLTPRYREELIEADLGTTVLIKGRVVHKDNL
R
>DM176_gag#LTR/Gypsy 565-1884 [Drosophila fruit fly genus]
MAQEPAIVPPLSDSNMTQVAYQIGNVEKFNGDPGSLYTFVSRIDYILALYATGDERQQQIIFGHIERSISGEVMRCIGAY
DMYTWQQLRRQLVLNYKPQTPNHVLLEEFRKTPFRGNVRAFLEEAESRRQTLTSKLELEQDLEEKTFYLKLIKSSIESLI
EKLPTHIYLRINNHNIPDLRSLINLLQEKGMYEQINHTSTHVQKQNFSDKPQKSFNQNTNQSNNIRKYPTPFLHYNSPIP
YQAPQIYQTPPTNNPLYRHPIPYHPNPNNVFQPSQQNNVFQPSQQNNAFQPNQRTNFTSRPIFNTNRNNAFDQNRFGQQP
QYQNQQSTQNSSSYVPNRPIKRLRPANSGQTGMSVDETLYQEDAFYQQCVPYDYFYYPTYDHSDYYPENQYQIDENNQNL
QRTQQLQQINTDETNNDNQEPNVEQAENFQPQALENPNI
>gi|115928846|ref|XP_001189446.1| PREDICTED: similar to helentron 4 helitron-like transposon replicase/helicase/endonuclease (hel_dr4), partial [Strongylocentrotus purpuratus]
MEQAEQEIRIAKEKAENLRKSQLLKDEEAEIERQKTAILLQAELKLLQQDSEEELQKWKVEGDSFRDRGQEREQVRGDSF
RDRGQERDQVRGDSFLDRGQERERVRDDFVGDHGQERDQVRGDSFRDRGQERDQVRGDSFRDRGQERVRGDFVGGRRQEQ
EQAFRKEPVSNEEGATKQMLREMIRFTAENSLPSPDLEPFNGDPLDYLTFIRNFEYVVEQRTDEPFRRLELLLKYTRGEA
HELIRECPHIQPSKRAYETAKSMLHRDYGKQSNIINAYKERAIAWEQIRSGDRQGLRKFAIYLNNCSHVRAAGDLGGMDS
ASFLRVLASKLPLYLQQKWISRVGLTRDIANRNPTLDDLAQFVIQTERNINDPMVQGLGYQRTEKNASYHKDEKEKLQKS
RSTKAFGTATQQDREQKDKRDPSCTFCGTNSRHVIDECRKFEALTVEERSEQCKRKGLCFRCLKPKHLKKECKSKIKCDV
CDRMHNTLMHDPRWMKDGEGNTRKTTNDASTSTDVQSEAGRISSGSTNVKKSVGGKPQTSTCMTIVPVIVKHKGNDRCIS
TYAFIDNGCGTVFCDTELTQRLHARTRKTKLIVKTLNLEEVIDTEVTVDELQIAGVKEKEFINLPPIYVKDERLSDHREG
LSVDDKNFLDIMEKSITKKDNHYQMDLPLKQRDVAMPNNKDQAERFLERQGQKLSKDKEIHEQYTTFMNDLEKQGYAEKV
PEADLDRHDGKVWYIPHHGVYHPQKPGKIRVVFNCPISYKGKSLNQELLQGPDLTNRLLGVLLRWRKEKVAIMADIQSMF
YQVKVTPDQCDMLRYLWWPEGDITKEPVAYRMLVHLFGATSSPSCSNYALKRTAKDNEGCAKEEVLDAIQKDFYVDDFLK
SVSTPQEGIDLAESLRQVLSKGGFKLTKWSSNRREVLDSIPKEEHAVELKDLDLQREVLPTERALGVRWDPENDQLGFKL
KEMSRKATRRNILSVMSSVYDPFGLAAPFVLKAKIILQELCQAKLDWDQSIPEKQKLEWEHWMNELQILTRQLHHFADAS
MDGYGVVTYLRQTDENEEVHVAFLTAKARVAPLKPHTIVKMELTAATLAVKQDSMIKREMNMELDETVFWTDSQTVLKYI
ANETARYPVFVTNRLSIIRDGSHTNQWKYIPTKLNPADHASRGLDASELTKKKEWFEGPEFLKQSEEIWPSEGVKAPARM
EKADDTMSGDLDETHIHATMINKEDPISALLSHYSDWDKLKRGVAWILKFKKMLQGKGKGIDGNSSEMFSLTNKDIEDAE
VAIVKQLQLESFPEEMKRLAGHGEEKGVPKRSTLSNLDPELSNGLLQVGGRLQNAQIPSSAKHQYILPKKHHVTTLLMQY
IHRRVGHQGQNHMVAELRQKFWVVGAGVLARNIARKCIICRKNQGKAGHQKMAELPRSRVQSDEPAFTRVGMDYFGPFEI
KCGRSIRKRYGVIFTCLSCRGVHIEVASSLDTSSCIEAIRRFISRRGPMKEMFSDNGTNLVGAERELKQALKELNQDQLI
NFHANHGMKWHFNPPAASHQGGVWERQIRTVRKILCAVMREQYLKSYQNEEQLHTFMCEVEAVINSRPLTRCSDNPNDLD
VISPNSLLTMKGSTTLPPGIFDDKDIYAKKRWKQMQYLADLFWKRWVREYLPSLQRRQKWLQPSRNLQVGDIVLVIDETA
HRCSWSMARVQEVMPDNKGFVRRAKVKTATTSLAGIIPLKLKRKIQYKSHVTYENIRPNVVLSALEMLKQIKKFYKDSQE
NVEWEKQCMEEDEEMWKELVLEEKERSTNDVPAGVDSSHFADELPVLSTSTMDIDDENDGDNPIYQSNECDKRDSEQTEA
EDEDPRDQLRGVNFDTCIQPTDPAMNSDGIFSIAPGEGKKPISIMMDEHCEEQAFPTLFPTGEFGFTVDRTIKLSPKKYF
NARLLNKDARFAQNIEYLFFAQFVTEYKQVMDNISIALRKVRLSRDDSEHVTAGIVNDSEKLNRIIFRDKAYNMLQTVRG
SPPYWQGVMYKILAAVKQLGMFTWFLTLSAADLRWTDTLQVIALQQGRTLTDEDISKMTWEEKCKLLASNPVTAARHFDH
RLQCFFRDVILSDLQPLGKVTNHMIRIEFQGRGSPHAHCVLWVENAPSHEDTEENISRFIDKYVTCQLPPSEDDELMHSL
VSTLQRHSHSASCRKTGKNCRFQYPRPIAPVTVVADTPSTEDLNIRKQIVEASAETMNKVKNALDETTEEGLSVQDVLSD
VNTSEDEYLDALRVNSNGKSIMYARTPQETNINTYNPTLLKAWQANMDIQYVCNPYACIHYIVSYITKDEREMGLALREV
SKAFRDADIKKRMKHIASCFLNVREVSAQETVYRVLGLPLYRSTFQTVFIQTDLPENRVVFLKPKCVLQGMDADSEDVYA
QTFSQKYEHRPTELEQLTLAEFARWYVPSYKTDDMETENDFQPNQLKESSTSKQTIKLTDKKGYMKKRNKPCIVRYHKFS
ENQEEERYCHHMLMLYLPWRNEETDLKNNHLTYADHYHTISDQIESKRSALESFTEIIENALERHEEEGPPVHAWDTLDT
GTQQENAEVNEEQCQIHPEYSFLQPSSEHTDTDIKESEICASLPLAVECRPEYLIDEIYRSKVQSLNQEQRKVFDYMQNW
CTDIMKSGKTTCKAKAIHLFVTGGAGTGKSHLILAIHQMALRTLQREGTNPDAHRVLLTAPTGTAAFNIHGSTLHSLFLL
PLGQTKGYKKLSDEKRNTLRCKLQDLEILIIDEISMVGCDMLMTIDQRLREIKGTDIIFGGITVLAFGDLYQLAPVCQRF
VFEEVKDLFARLAGSLWQDNFMIAELTEIMRQKDDKEFAELLNRIREGVHTEDDVANLQQCCISSEDKIDLSDALHVYST
NAKVDAYNEDKLAHLKGRIRKCVAIDRKPNTLKGHEMNKDSRFTGGLPAVLELKIGARVMLIRNIDVNDGLVNGALGTIV
SFNEFNPSVTSPKEVLVQFDNPRVGAMAGEKTSMNKAQHPTAVPIGVIEAKFSISARNPGLEIKRQQFPLRLSWATTIHK
VQGLTVKDIVVSMEGKFNDGQCYVALSRVPKMSGLHLLQLTPSKIKASRAVTKELMRMSNEMSFQFFHDEIETALKDPCQ
TQVIAVHNIRSLPAHYDDLKGLPFLDKCTAVCLTETWLQSHHTASTYNLPSYHQLRRDRSNTEKGGGLCISGVPG
>IS150_insA#DNA/IS 30-569 [Root]
MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHM
SLNQAAAHFMLAGSGSVARWLKVYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLMY
LKKLKALAHPTKK
>Tfo1_FO_tp#DNA/hAT-Restless 284-2620 gi|7493945|pir||T00208 transposase-like protein - fungus [Fusarium oxysporum]
MSAHSFFRPHRRIRKSTPPRTPSEPLGSTLPSTPTSVSTPTDILVLDDGASTPTIADERQIPTSSQCVFPINWDKIRYDG
KPVPSIRYRQPHKRTLNSKLQPSAIYKHGAQLTTDGDNKYWLCKYCHIRGHHHTALFSSESTTSVIYHLKHQHKLEDFGY
QAALSNPFSMAKGTTNPTSYLGGRRLVFNDLQFKDDFIDWVIDLDLTFRQVTHQRTHEIFTNHLEDIGKILPKSPSALSN
WIKEKWVGDAGRRVWLMEKLHVATSKIHISVDAWTSEEGTNYLAVVAHFLDESHKLQTALLDLPPLKGPHSGENLAKALS
KVIDFYDISTVIGFFMMDNAGNNDTCIQELAKQYPAIKPQSRLRCVGHMLNLIVKALLFGQGVSKMEQQLRGASDEERFE
IWRKQSFIGKLHNFCVWVNRSDQRRELLKQYVLTAYDEGSIECLYTRVLVDGGIRWNSAYAMIERALKLRHAIDLFFLNY
NHIGKEYDISQDMLTPQDWVDLEHFLGILKPFKDLTKRMEGRANKAGLEGSHGSLYETIESLDVLFKELQEAGKFADNHP
EVVSTYYSYAIDAARVKLEEYFGLTDATPAYRCAVALHPANKFTYFELEWSHNKQWISEAKRVVREVYAQYEEAAAKTGT
IGAQPQEEVIDDNDVALDPLQQARKRRQRLAATAASGSRGNKRIKLTSELDEFMARANRADVEVEDPLEWWVCHASDYPI
LSKMAFDLFSCPAMSAECERVFSQTKKVITDERNRLKSDTVAALECQKHLLRTGMLP
>TAG2_tp#DNA/hAT-Ac 2 exons; from repbase [Arabidopsis]
MNRHMRSCEKTPGSTPRISRKVDMMVFREMIAVALVQHNLPYSFVEYERIREAFTYANPSIEFWSRNTAAFDVYKIYERE
KIKLKEKLAIIPGRICLTTDLWRALTVESYICLTAHYVDVDGVLKTKILSFCAFPPPHSGVAIAMKLSELLKDWGIEKKV
FTLTVDNASANDTMQSILKRKLQKDLVCSGEFFHVRCSAHILNLIVQDGLEVISGALEKIRETVKYVKGSETRENLFQNC
MDTIGIQTEANLVLDVSTRWNSTYHMLSRAIQFKDVLRSLAEVDRGYKSFPSAVEWERAELICDLLKPFAEITKLISGSS
YPTANVYFMQVWAIKCWLGDHDDSHDRVIREMVEDMTEKYDKYWEDFSDILAMAAVLDPRLKFSALEYCYNILNPLTSKE
NLTHVRDKMVQLFGAYKRTTCNVAASTSQSSRKDIPFGYDGFYSYFSQRNGTGKSPLDMYLEEPVLDMVSFRDMDVIAYW
KNNVSRFKELSSMACDILSIPITTVASESAFSIGSRVLNKYRSCLLPTNVQALLCTRNWFRGFQEVGNIHILNSFIIVNL
YGFWTAAFRLIARFFLL
>IS30_tp#DNA/IS 63-1214 [Root]
MRRTFTAEEKASVFELWKNGTGFSEIANILGSKPGTIFTMLRDTGGIKPHERKRAVAHLTLSEREEIRAGLSAKMSIRAI
ATALNRSPSTISREVQRNRGRRYYKAVDANNRANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISGWLRRTKPRQK
TLRISPETIYKTLYFRSREALHHLNIQHLRRSHSLRHGRRHTRKGERGTINIVNGTPIHERSRNIDNRRSLGHWEGDLVS
GTKNSHIATLVDRKSRYTIILRLRGKDSVSVNQALTDKFLSLPSELRKSLTWDRGMELARHLEFTVSTGVKVYFCDPQSP
WQRGTNENTNGLIRQYFPKKTCLAQYTQHELDLVAAQLNNRPRKTLKFKTPKEIIERGVALTD
>Restless_tp#DNA/hAT-Restless 1460-3915 gi|1542945|emb|CAA93759.1| putative transposase. Has a small intron, which may not be real.  [Tolypocladium inflatum]
MDADLQDLFWGQVGSETSLTLHSSPCPSRRSTQSSSLSASAPQTPPRKILNLDENPTPTEIAHFPFELFNDELRAATPPR
TKGAKVAWWWVKGFRMRLKSNDKKLRWVCRLCVRRKCRTVSHFSYESNGSANIIKHLRDIHGIKDPGRKDETPPSRTQTL
TEHFGVTAAPADQRIFSTILGRLKLGAFEELLVDWITHDNLPFRLIESERLRRLIEFINPMYKDKVPSSAVLRSRLRSIY
NGAKGAVTEHLKTARGKIHIAFDGWTSRNQLSLLGVNCFFVDQLWRHRRLLLALPAVSGRHTGDNLANEVADVLAEWDLG
SDRLGYMVLDNASNNDTAMVALGKEFGFDPDERRLRCLGHVINLAVKQLIFGEAADAMEHTGGSEPDSEYYFDSLPADTL
AQWRRRGPIGRLHNLNAAVLNSPQHLECLVKWQEEDLKSGVLERIDPETGKKRVPLRPIADNETRWNSRHRMMVRALLLR
RYLNRIVEKAERAWERSKRKSVKPSILDDKLSEEDWDVVEVFIQVLRPFDEISVRLQGNPKTSEDDHVNTGSFWEYFPSF
EYLLTHLEELKQNHDLLDGLGEDSADMVTTHINLAWMKLNEYYDKLWPVAYIGAVVLHPCFGWPAIQYHWEGHADAKRWE
EDYSTRLMKLWKEEYANREVPGLAMPSTASSRTGLSGYGAFLAQSLGKRKRAHPDGRAGFTSQPRPTLDEYERYIQTFTH
ADDKYQFRPLSWWQEHEMEYPNLCRMATDLLSIPTMSAETERSFSSAGKMVSPLRTRLDRHTIGMAQGMRSWSREGIVLP
SW
>Ascot-1_tp#DNA/hAT-Restless gi|1523780|emb|CAA68959.1| putative transposase [Ascobolus immersus]
MITSTEFLNIIMYLAACSPEYSVVRRVMPKSATTVTSWIASMFEREQKHIVDYFQEHNIGQINLSFDLWKGPNNRYYLAV
VGHWFDAKAKKVRHSLLALRNLQGAHTGENQGVLLWRILQDFKITGLLGWFTLDSGAYNGVTLRWLAEQVETEHGWTFLA
DERYIRCFGHTLNLIVEAFLIGTHYTNLKRALNDIARERQNITANGGGLTAAQQRREFELQEDLEMAEWRKTGALGKLRN
IIMFITRSHHRRELFITVVRRCKADGSIPAEVKAELLVVPNDTRWGSTFEAITRAQKLKPAVQQFLNLQRTAGSEDELST
ADWQTLSLIAEILQPFRTFTLCLEGNRENGALYDIVRLFETLRKELTKAYHKHLTTRPLLVSSLDFAIRKLNSYYNFTRL
PPVVFASVALHPELKMRYYEAVYRDDHEKLELVRSKVDQVWAEYYQQFGHGGHSGEESGMYPDFKESQAQESQGLSATES
QIDDATSFLFDNWKSEFPGSASQLGGEGGEFGFNELEAFLSEPCQKVPNPVEWWIVNQDRFPLLSKLALNILSIPAMSAE
CERVFSNAKLILTERRRTIGDEALEANQVLRAWIRAGLTTSDRCDAVLSALRAFDSDYRRQEKEEETASEADDDDEL
>Q57047_9ZZZZ/368-476 transposon family Tn5 Pfam:PF02281
ESFTLPQALRAQGLLKEAEHVESQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWG
ALWEGWEALQSKLDGFLAAKDLMAQGIKI
>31335179_Nme#DNA/Merlin gi|31335179|gb|AAP44503.1| transposase [Neisseria meningitidis]
MKLKNKYQKFSKISEQKFREIIRCFALDLTASDTAKMTGISVRSINPIFLKIRRRIAALCEQSSPLSGVVELDESYFGAR
RIRGKRGRGASGKTIVFGILKRNGVVYTEIVPDASKASLIKVIRGHISADSEINTDGWKAYDGLVDMGYEKHYRVHHGSN
EFARGKQHINGIESFWSYAKGRLAKFYGISKEMFYLHLKETEFRFNHRHNINEDASK
>Hermes_tp#DNA/hAT-hobo 450-2288 [Musca domestica]
MQKMDNLEVKAKINQGLYKITPRHKGTSFIWNVLADIQKEDDTLVEGWVFCRKCEKVLKYTTRQTSNLCRHKCCASLKQS
RELKTVSADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVGAEYGEHVNVEELLPSPITLSRKVTSDAKEKKA
LISREIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKAIFLQFNVEDL
SSIKFVTDRGANVVKSLANNIRINCSSHLLSNVLENSFEETPELNVPILACKNIVKYFKKANLQHRLRSSLKSECPTRWN
STYTMLRSILDNWESVIQILSEAGETQRIVHINKSIIQTMVNILDGFERIFKELQTCSSPSLCFVVPSILKVKEICSPDV
GDVADIAKLKVNIIKNVRIIWEENLSIWHYTAFFFYPPALHMQQEKVAQIKEFCLSKMEDLELINRMSSFNELSATQLNQ
SDSNSHNSIDLTSHSKDISTTSFFFPQLTQNNSREPPVCPSDEFEFYRKEIVILSEDFKVMEWWNLNSKKYPKLSKLALS
LLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFLNSFYKNFCKLDI
>EnSpm-2_BF#DNA/CMC-EnSpm 5810-8110 [Branchiostoma floridae]
MTWKVLGLNRDNFTKYCVCPDPKCCKLFDIDKLSETVNGTEKPRRCDNVRMVRNRSVRCNTLLSRQVITSVSGVRKYYPF
KVYCMKSVIETLESFVKRKGFEEKCELWRDRDMSDQELLGDVFDGQVWRDFQEWNGKDFLSAPRNYGLMLNLDWFQPFKR
RNDYSVGAIYMTVMNLPRKERFKVENVILVGIMPALKSEPKCLTHFLQPIVTELQFLWQGVHFTSYMSPKFPLKFRAALL
CCAADIPAARKLCGFLGHAAKIGCSKCKKKFEKVGKKTNYSGFDKASWHLRSDAQHRREGLQVQSCCNVTRRKELEKSFG
TRYTPLMDLEYYQSVRFCILDPMHNLFLGTAKRMFKLWIDREILTKTKLNKLEKRIGTINLPSGIGRLPTRITSNYGSFT
ADEWKNWTLYYSMYCLHDLLPQEHYQCWQMFVLTCQRLCKPAVSRADIDWADSAFVMFGKKVERLFGELSITPNMHLHCH
LKDCILDYGPMHGFWLFSFERYNGLLGSETTNNREVELQIMRKFLISDFAHNLPLPSYLSDVFGPIFERFSPKDKVADVP
SEKERMLLKMCASRYISNFDWSADEQTIKLPPVFTRNALSPDDKEFLHNTYNEMYPNKEINASNLATVVRKYGTCQVGQE
LFGSRIAARSSRAAYVMAAWLGENGNIDSSSEHRPGVIQNFYAHSVEIGGEVKCHVFAVVRWYRTSPCKSDIGNGKPFTV
WEKSTEVGGPASFIPVQRLYRKSAWAETVMDGKKVVVVCPIARKTLL
>TAM3_AM_tp#DNA/hAT-Ac 848-3097 [Antirrhinum majus]
MDTSNIQPATTEDYIHNFNMGVGFSVWDTTLGIGPHVGNYQQEHVFGPGVGPSNNNPAVELGPHVGTSHHDTSANMAGET
ATGGASSAVGSDDDAAEGDNAEMDEDEIPDTPVEQMASTSRPPKKTKKATVWKWFSKVTGSNWAQCLLCPTRYSHKTGCG
TGTLTRHLTAKHKNRDMDAPDMQRQPDGTMAPWRYDQNYMRICLAQFIVQNELPFSFAQNELFENFLQKAVQCKFKKISR
ATCFRDGVKQYEKEIIVLRNEFKNFNGRISLTSDLWQGSGSYHFSCITAHWIDKDWIMRKRIIEFAQLDSPHNGDCIRDA
TMSSLNYWGIKDKIMSISLDNASNNVNAIKSLKPAMNLILGGQLFHVRCICHILHLCVKDGLSVLIQSIDRIRVCLSHIN
RYPPRVQAFNTVCETHGMPIKHIYLDVPHRWNATYRMLIEAKPYSEPITFFCHRSLGPNSILADDWNICDILVPYLVYFE
EFTKIMSSCYTPTSNIMLLYMVSVVRLFHQHRNHATLKNIIKEMEKKWVKYYKKVPNVCILSSCLDPRVRLIGTLELLEK
YHSALNNVYNGNEERNRILQLLYSLYDMYAPSTDMDESPTNASRGSGFSIFDELLSNQQSNQPSVGNYTEIHLFVQKPPQ
KFDKDFDILKWWRQNESLTPVLARIARDLLSSQMSTVASERAFSAGHRVLTDARNRLKPGSVKFCMIWKDMLDQQYREKT
LRKVETVLAMDGEEDNEDATMPYDFTNIH
>AC9_ZM_tp#DNA/hAT-Ac gi|136125|sp|P08770|TRA1_MAIZE PUTATIVE AC TRANSPOSASE (ORFA) [Zea mays]
MTPPVGNNPPSGSAIRLAKLMSTTRAPSTRKTNSVFSAYAQGLKRKAEASSSRIQNVRARARGHGCGRTSPSSSTAEAER
HFIQSVSSSNANGTATDPSQDDMAIVHEPQPQPQPQPEPQPQPQPEPEEEAPQKRAKKCTSDVWQHFTKKEIEVEVDGKK
YVQVWGHCNFPNCKAKYRAEGHHGTSGFRNHLRTSHSLVKGQLCLKSEKDHGKDINLIEPYKYDEVVSLKKLHLAIIMHE
YPFNIVEHEYFVEFVKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWTSCQNKSYMCVTIHWID
DDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVR
CACHILNLVAKDGLAVIAGTIEKIKAIVLAVKSSPLQWEELMKCASECDLDKSKGISYDVSTRWNSTYLMLRDALYYKPA
LIRLKTSDPRRYDAICPKAEEWKMALTLFKCLKKFFDLTELLSGTQYSTANLFYKGFCEIKDLIDQWCVHEKFVIRRMAV
AMSEKFEKYWKVSNIALAVACFLDPRYKKILIEFYMKKFHGDSYKVHVDDFVRVIRKLYQFYSSCSPSAPKTKTTTNDSM
DDTLMENEDDEFQNYLHELKDYDQVESNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASES
AFSAGGRVVDPYRNRLGSEIVEALICTKDWVAASRKGATYFPTMIGDLEVLDSVIAAATNHENHMDEDEDAIEFSKNNED
VASGSSP
>EnSpm-1_BF#DNA/CMC-EnSpm 3167-5377 [Branchiostoma floridae]
MEEAFYTKANGRKVSRKCEFVPFYSHPHRRSELRRKCGTVLMRKVKSVKGDEYLYPKSTYCYKSVKESLQDLVSRPGFND
KCEHWRDRNVPDTEMMDVYDGQVWREFQYVNESPFLAEPNNLALMLNCDWYQPYKHSEYSVGVLYLVVLNLPREERFKEE
NMIVVGLIPGPKEPKIDINSFLEPLVEELQDLWKGVLLSDNSILEAQLYRAALICLSSDIPAARKCGGFVGHGALRGCSK
CLRTFTRSRFRTKADYSGFDRTLWPPRDSSEHVRFAKMARRAKTKADRKRVEGQYGARWSELFRLSYWNAVKYVVVDPMH
NLLLGTSKHVFKVWMELGVLNKKAFDVIQSRIDSMKVPHDVGRIPRKIASGFSGFTADQWKNWTCIYSLFCLKGLIDSRQ
YDMWYEFVQACRLLCSRAISYDNLRKADHHLQRFLAMFEEFCGPQYCTPNMHLHLHLKECIEDYGPVYAFWCFSFERYYG
MLGKYQHNNRNIEVQIMRKFQQSKQLSMMSWPGGYGDAFKSVLTDGKLSSTSVGHALPLMADVVVLDNSSVVEPLSPFRK
VVISEAVRSMLLTMYRAMYPGVAISRLDLFAMSCTRVRCNGVTLSVDSCRSERSACVHARWCCNNPGSDQPTIDSHAEER
PAVLREVILVHILLGNGRRCSHAVARVTWYEHHPERWFYGRGSPVQVWGLDFEPESPASFIPVERIAGRCVATTAAVQFD
RMKERVSVIVPLCAVAD
>TDC1#DNA/CMC-EnSpm 1374-2936 [Daucus carota]
MNNNRSWMYERTDESGFLNSLFISGVEEFMNHVISQPTSMNGTSIQCPCTKCKNRKFWNSDIVKLHLLKNGFVRDYYIWS
RHGESYIFNGNEDQSSANYSNVARGTDGNNLMYNMVIDAGGPSFDPHRSEEMPNAEAQNIYNMLNSSERELYDGCETSQL
AAMAQMLSLKSDHHWSEACYDQTSQFIKGILPKDNTFLDSFYGTKKHMEGLGLPSIHIDCCVNGCMIYWNEDIDMESCKF
CSKPRYKIRVNRSTRERKKVAVQRMIYFPLAPRLQRLYASPTTAAHMRWHADHYKEDGVMHHCSDSGEWRQFDRAHPLFS
SEVRNVRLGLSADGFQPFGSSGKQYSSWPIIVTPYNLPPWMCSKEEYMFLSILVPGPRNPKQKIDVFLQPLISELKMLWE
VGVETWDTSLKQNFQMRAALMWTISDFPAYSMLSGWKTAGHLACPHCAHEHDAYNLKHGGKPTWFDNHRKFLPANHPFRK
NKNWFTKGKVVSEFPPPIRTGEDVLQEIESLGFLHLFQLL
>Hermit_tp#DNA/hAT-hobo 345-1882 gi|758784|gb|AAA64851.1| transposase (RepBase entry contains frameshift) [Lucilia cuprina]
MNLEIIKSIENGVFRLSKKAHSRSKIWEFFCQIEKEDGKIIDGLVICEKCNRILKYNGKQTSNLIRHNCYVARSRNVALK
QVNSADKENYLLACSQWVVEDCRPFSIVDGKGFKKMVQSLLNIGTKYGNHIDIADMVPNSRTISRRISDIADDKRSKINE
ELQMAITSGTASITTDLNFVKRQFLCVTFHLIKDLKLKEIVLDVKSMDFESSTANNVLTKLNSILKNFEVNSMENITFVT
NRGSNIVKALKGQNRINCANHLLNNVLDSGFNSTSELTPFFGACKKLVKYFKKTSLQHILSTSLKNYCVTRWNSHLNLFQ
SISNNYFKIQEILASINEMQRISDINLALLNALVAIFEKFDIMSKKLQGVNYVTINYVYLTINTLKTICEASDSDIEIIK
TLKINILREMETKYVANLTILHYAACFLYPPTNSCLDERQLNEVKDFCVSELMKCVPSSESSVSSLNFNEPPKDFQLFFS
TFMNSINPSMAESISDEVNRYSYLKINFDVKFKVLQLWESHSSEYPRLYKFAQKILAIPASSAASERVFSAAGNIITEKR
NRIGPKTVNNLLFLNSLCKYE
>48249215_Pin#DNA/hAT-Tag1 gi|48249215|gb|AAT40862.1| transposase [Phytophthora infestans]
MSLRTGAIPASSGNPPVVIEQRDLTVRPGRKADAAWSHVDVDPQGGVWFKKCNQLLQTTGRSHVERIKHHLTKRCSAKRT
TALVTDTFRPRLKSDTTKQFQDRLAWWVYSTGMPFYRIGHISFLEALQLLHPDVKVPSPEQLATVFLDRAYSKSIKMLKV
ALDGKIVTLVTDGWTDINGLAVVNYVVVCGEYTFFLESVYTGTQAHDAEFLAADIERVIAKYDFLEVGAVVTDNTNANKA
AWETLQNKFPKTFFHGCVCHGLHLLVKDIVKKVKWMDTLQSGCKEMVTFFKKNHKAWAELSAQLEEKDLQVLAKPGDTRW
GSLLKCFETVLAAEAILFSRVSARGFLKAKIKKQKKTRRGVHTLVTSAEFVPRLKKAIAILKPISKALKLFEKNVTPVSE
VYQVFVDLPNELKATGLTAAEYKSVDALVSSRFEFIYGDAHGIAYLLDPRYAGIDMDSSLRSAVEDFVVQWHDEEKADAV
IVELSAYHRHVRDLKVTQPRQWGLLCERKIPLFDFWCGLNNLPLLQDIALRLFRCAASSAASERNFSAHAFIHSKLRNRL
APDRVEKLVHIFFNAKNICDEDIERYSHLEDLLRVFVEEDEEEDTGTSNQSDDFVYC
>Tx1-5_BF_pol#LINE/L1-Tx1 1648-5142  [Branchiostoma floridae]
DPLTDLKMTDLNIVSLNVNGMKDRDKRQAVFDFCRTRKVDVACLQECHVSSLADKMYWSRQWGNKAIWSLGTNSAKGVGI
LFGPGISVVAHRSDTEGRVVSALVKLDDTNYNIVNIYAPSVPTQRVEFFAELHQYMFPNASLIVCGDFNCVLDPILDRCS
GSSSSPRDNVRDVVELRGFCEDLGLVDVWREQHANQREFTWSSKSCETRSRLDRFYVSDPVHCSSEIRTFPMSDHDAVFL
SVTHTPRVERGAGVWRCNTEVLKDGIFIEEFSERYEEWRARKGSHKCLRDWWEEVKNNTKDLLISHSKRRAKAATLIQRD
LEKKIDMLRSCLNNGGTCPATVHDYQTAKEQLKKLLSDKLAGQRVRSRIQNFEKDEKPTRFFFSKERKRGEKKMVRELRT
ADGEIVTSREEILETFHDFYANLYSADSINSEDKNYFLDKLVPTLPDTDRIRLDQPLSLEEMEQAVKEMQNGKTPGSDGL
PKEFYTQFWAIVGQDLLQVLNEGLEENQLSPSQREGVITLLDKKGDPLNPANKRPISLLNVDYKILAKTLANRLKVAVGE
VIHTDQSCGIPGRSLEDSLSLLRDIVAYTNSTNSTCVLLALDQEKAFDRVDHSYMAEVLEKLGFGPKFQSWIGTLYNSVS
SRVLVNGDLSSPIHIERGVRQGCPLSPLLYVLCIEPLAAAIRADPQIRGVKVPGGQEVKLVQYADDNTCVLSDQPSIDRA
FHTIRRFESGTGSKLNFGKTEAVWLGRWRGRQDKPYPIGRWTSDSIIILGSPMGGERMAEEAWLQRFAKFKAKLDQWRNR
KLTLIGKVVVCNSLAAATLWYTAPIFPLPKSIEKKLEKEMFAFIWDNKTELVARRTLYLPKEKGGLNLVCIPVKAQALLL
KSVRKALTTPDAPAAKFTLYWLGFSLRRIDPASWSNNAPHSVDPPPHYAQIAKILQNVQQSNIQVEWAAVAVSSLYSSLL
EAEDFVPRCVRENPSLDWPEIWQAILNPLLTNWERMVCWNIAHDGLVTNKKLYSWRKFSKTSKCPRRGCDEVESISHVFL
ECAHVSEMWTWLEWLIARKICPNFVLSNKFVLWGLAPDGSSMKTRRVLGALSAISKNLIWRSRGDAKHNKKHHSSAELAL
LLKETLAERLVFEFTRLGPAGFYTNWAEGYSWADVDVAHLSLKF
>Tx1-4_CQ_gag#LINE/L1-Tx1 143-1342  [Culex quinquefasciatus]
METRKNTLKLQFVTSAKVPSHLDVLKFMAKGVKIPAADVHSVYKDENDQKFYVKFIDETSYNRFCNTVEDQYWFHYEDGS
RTPVQLELASRQFKYVRLFNLPPETEEKEIAAALAKFGKIRQHVREKYPADLGYHVFSGIRGVYMEVEKEIPANLYIAHF
RARVYYEGLKNKCFFCKAEGHMKVDCPKLASLRSSAETGGQPSYSSVTANLKIATGSAKETASPLLNMTLIPVPAQRTKT
KEQAQQEEAGVVPSTSTVQPPVQANPDLALPQAKPAEGQGEEQKEASPIDAIVANDPSDXSAEQTDAETDDETEKCNDGQ
GEAGGSASDAMIVDGDQQNANDTKQEEAIDREEWRLQQKQQLKRPIAESLSTDSNAGQGKGLLKKKPRGGKGKRGSKGK
>Tx1-12_CQ_pol#LINE/L1-Tx1 1351-4626  [Culex quinquefasciatus]
MNFVYTIATLNLNSSNANVNKNLLKDFIMDYNVDIAFLQEVSFEDFSFIYSHNSLVNISIDKKGTAVLIRKSFSXSDFIL
DPSGRIVSVRVNDVNLINIYAHSGNNLRKERDNLFTEALTVHLNKPGTKSMLIGGDFNCILHAEDSGSSQKNFSCGLKHL
VDLXKLKDIAKTRKECKFTFHRGESASRLDRFYGSDNIIGNVTSCSTIPLAFSDHHAVLIKLKLDDNNLSTRGRGYWKIN
PSFLSMEDVTEKFKQEYLKLKQRDIFNRDLSKWWFFHFKGKAKNFYKSESWHFNQSSRNCKAVLLNRLNELSDKLANGDN
VGDEMSVIKSKLMSLEQNRLKNLGEKLPACTLAEGEKITIYQLSNKIHRGNIFGLQLRDGPSHEILTDNAKLGPVIHQYF
SNQFQQSEDNISSAEIDNSIESISKNLSNDQKINLVKPITVEELYETLKKCNRKKSPGPDGLTYEFYLCHFDILKNDLCR
LFNLYLRGESSPPKEFSEGIITLVPKKGDKTLLENHRPISLLNTDYKLFTKLLANRIQIYMEDLLGSGQSACIAGRSCTD
NLNDVRRLITKSVESKTFKGMLLSIDLEKAFDKVNHKFLWKILEKFGFPEKIIKILQCLYTKATSRVLYNGFLTNEIKIF
SSVRQGCPLSMILFVLYIEPLIRKIDQCILGVLTYNKFLRVVAFADDLNVFVRNAEEFDNVLSIVDSFSRYSKVKLNYKK
SCFLRINSCIGGPFIVQETEQLKLLGITFKNTWKDIVDINYSKLISDMKYRINLNNFRMMSLLEKVWFINTFVLSKLWYL
SQIFPPKNQHIATIRKIIGMFLWKNNIFRVDKRQLYLDVDQGGLGLIDPESKCKALFIKNILKEQNISATDVSEKYLLGL
NFTSKLTRNGKEWIMLAADLNCSSPTINTAKQIYRNFIHEYLFKPRVQVELPQVNWGALWKIMGQTFILAKDKANLYLLI
NDLVPNKRKLKQYNIGRIDSEICDECGQIDTNSHRLRTCTAGSELREWMIKVLRKRFGIQLGQIDDILFWQIDENSHLQK
AAMWLVVHYVAFCVDKFPGLSLFVFQKSIREFRWNSRTFVKRYFDTNLNIC
>Tx1-1_CQ_gag#LINE/L1-Tx1 143-1387 [Culex quinquefasciatus]
METRKNTLKILFATGAKVPSYLEVLKFMSTGVKIPATDVHSVYKDENDQKFYIKFMDENSYNRFCNSVEDQYWFRFDDGS
RSPVQLELASRQFKYIRLFNLPPETEEKEIAMALSKFGKIRQHVREKYPQDLGYHVFSGIRGVYMEVEKEIPANMYIAHF
RARVYYDGLKNRCFFCKAEGHMKVECPKLASLRVNAETGGQRSYSSVTANLAIANSSTIEPDNTLTMTTLPLTSPPARPK
MPMQPQEGDGASSAKISTPANNPFVTLTPAEVPMETPVPRPEETTNNQASAATTTERPEETTNNQASAATTTETPNKPVD
ATATVATPKETSAAEAERSGHDGMIIDGEQLMVDEAIKGTAEGEGKLELKKRPIETSLSLGSNDSDLGQGKGSNSKKKRG
AQGQGKGKGKGRGK
>Tx1-7_BF_pol#LINE/L1-Tx1 1389-4895  [Branchiostoma floridae]
MMPQNMHRLNAFFMLTMVVIATLNVCGMRNPNKRKQVYDFCRQHKFDIVCLQESHITHVDETTKWEKEWGGQALWSLGTP
NSRGVGILLSPSLDLKITKKFCDDEGRVVSAVLADGTRSLRVCNVYAPNDAAERSTFFRGLGNFLSNSESTVLCGDFNCI
ESPSLDKRGGNPSRSSGGSKILKNLCASHNLHDSWRQLNPDGRVYTWRQPDNAVACRLDRLYSSNNLPVSGHFFRPAYFT
DHDCVGIDVLPTAKKKSSMWKCNVSILKNKEVQSDFTASYKDWQTLKLGYPSLRSWWDDVKDRTRSLFIKHSCKIAKDKR
EARYQLNNTLGDLTNQLNAGAVSPDVLRQYKATKDALSELATSEAQGAIVRSRIKQFEEGEKCTSFFLKQAASNGKKKRI
CAIRDSMGQVVHEDDEIANVFYEFYAELFAEEPVDPVASDQLCDNLENTLTPEEAQALEAPLSTDEMLNSVRSMQNNKCP
GSDGLPKEFYTTFWHLIADDLLKVFQEALDAGELSSSQKFGVLTLLPKKGDELDPKNRRPISLLNTDYKILTKVLNNRLQ
SVIASVLHPDQTCGVPGRSIQCNLRLTRDIVVYANNNNIECAIVSLDQAKAFDRVNISFLQQTLARMGFGPSFRKWVSIL
YNDISSSVLVNGSLSSPFALTRGVRQGCPLSPLLYAISLEPFAATVRKDSEVHGVKLPGGYEAKMSLYADDNSAFLTSDD
SIVRLFDLVGLYNRGSGSMLNLDKCEGLWLGKWRNRPDTPVQIKWTSGSIRLLGGVFGNIDMPLTNWKEGKRKFVETLQG
WGARSLSFTGKVTVANSLATAKLWYLASVFTPPDSVMKEINTALFAFFWDKKREMISRNTIYLPPEKGGWGLIDIAKKAK
CLYSRPFSDIMSQEDLPWVQLARYWLGIFIRRFDPSTWSNNMPHSPNAPPHYKALQSLVSELVEASPSKKWDPGCTTRSL
YDSLLKKDAHIPSVCLNKRSVPWPLTFQSVQHPLLENRLKDTAWLVAHHALKTNALLCSNWGYIRSGTCPRQNCKGHETV
EHAMWYCSEVLLTWTWVEGFLRRWVMSDFRINKQMVIYGILPPSWKKCKIDAITYTLAVARKRIWSSRCEALFDKTFSTH
VEMVPYIKECLRSRIKLDFVRLNETTFMSLWCSVQWARVDGGKLRLRF
>Tx1-6_CQ_gag#LINE/L1-Tx1 2-673  [Culex quinquefasciatus]
YYDGLKNRCFHCKQEGHVKSSCPKLVTVSPGSGXPRSYSSVAARGTPVAPPVLEVPAFKPQMQLLNSKRNQSVPTPAPPQ
VTVPVTEAAISQREKVPADGAALPAVTPATSGSSVAGSSKTPAEILKVLQSIAKETEEPMDTSLDKVAPKRPADPPSDGE
GGVSEEGGSEEGGTAEGGDEGLGGSGVDADGFKKQGGKRSNKAKKSKKVIKTIETRADAKASK
>Tx1-6_CQ_pol#LINE/L1-Tx1 761-4009  [Culex quinquefasciatus]
MVFTRSICTININSISCIAKKLLLRDFIFNTDIDILLLQEVAFESFGFLHSHTAIVNFNNDSIGTAILVRKGIEFSNVLM
GSCGRILSVSIDNFNIINIYAASGTNRKKERDILFSSTIIPHLSSVKNNIIAGDFNCILLSSDSNSTVPNFCKGLESLVK
SVCLFDVEKEKNKSVQFTFIRGISMSRLDRFYAPKDFLSKVLSVSTAAVPFSDHHAVLIKYQVPDGIPLKLFGRGFWKIN
PSLIDNSDIHNKLITVLNDLETREMFSRDLNKWWNQTVKVKIKQTYKSESFHLNQQIHREKNFYYTCLKEIIIEQSNGRH
VYDEMIFIKSKLLQIEHDRLKNFSLKIPPTSLASEETLSLFQISSSIKKNYSDNLLHLRTTKGITSDYKELKPCIENYFT
KIFANESSNNSNNNFPVLNNINKSLNLQDSNMLIRPISKDELNTIIKQSAKKKSPGPDGLTYEFYEHFFDVLSDHLLKLF
NSYLRDGVCPEPSFSEGIIALVPKNGDQTDISNKRPISMLNCDYKIFSKILANRLHAVLPNLIGPGQAACNPEKSCIYNL
RLIRNICLRAEQTKRLKGLILSIDLEKAFDNVSHDFLWAVLKKYGFPNEFITCIQNLYKHASSKILFNGFLTNTILILNS
VRQGCPLSMALFALYIEPLIRLIYDNVQGCFIANTFIKVIAYADDLNIFVLNDHEFDTVLELINYFSIFSKIKLNARKSH
FMRLNNCRSGPHMLEEKMSLKILGIAFYQDFSRTVDSNYNSIIPKFKNVLAQHSKRKLNLVQKCIVLNSYALSKIWYIAQ
IFPPSNKHLADIRKSCGWFIWXNFFKVDRNQLYLPLEKGGLGLADPEVKAQSLFVKNIIFAFNDDKDSFMLAQTRNKSLT
RNARAWLDLASELSHFSYLDSCKSFYNFLLQKRNTIPKVERENPEFSWEIIWENISKXXLSSYAKEALYMVYNNLVPNRS
KMFRLKVRGVVDNLCEICNNVDSTEHRIKNCKNTRPVWEWVEEIISKRLKLVVEDPEEIMQMSIVTSMKRKACLWLVAEV
ICFNLKNTNNATVKDFQHHIRKIRWNFREVFKKHFGNLLNIC
>Tx1-6_BF_gag#LINE/L1-Tx1 220-1842  [Branchiostoma floridae]
MPQVTPSAYTKRRTVAITFLENRDAEFDDIVELLRKHKVDIMRDCAGIQSKERGWAEVVFETTSALNRVAPALAADRTID
VELYGNGVTLVTVIGASLELDDNYVRYQLREYGTIKDGRFLTYASRGFPNLKTGTRQYKMLLSKHIPNSIRVGGDNVSIR
YNGQPKMCHRCGGQDHFVAACQAVKCTRCHELGHRAADCSAQIKCNNCKKEGHTLRSCPLSFANRLTMGTKWGSTAEWTQ
SDDQNRPGGSGAQQGNVGLKPRVELTSDDNESVKEDDDKEDNESVKEVDDKEEEDRDDSSDEGSDFEDARKSAPSKEEDM
EVEDDEEEKGKEEERENGKEEETVPLKVAGDPSTGVIVGAKPTTPKVAGDAPPEVVTATKPVTPLSEPPQSGGFWDLEAL
GLPEDGANKIPDSLSEQADPQASLALALPESGDLIIDMETEGDVDTPKRPHSSESEDSSDGSNIPPKAATKGKKAKVLPE
PQEKGFGSQIDLFPSSAEPSQKGKKPEAKNVTRKKSTTNSGKGKSGKPTKPGSKANPKPT
>Tx1-5_CQ_pol#LINE/L1-Tx1 1375-4632  [Culex quinquefasciatus]
MQYSYKIATVNLNSTSTDVNKGLLRDFVYNHDIDIVMLQEVAYDNFLFIPTHFPLVNISEDNKGTAVLIRKSFNFKDVLL
DPNGRIVSFVLNNINYVNIYAHSGSDKRRERNDLFTNRLAVHLNKPGTRFSVLCGDFNCILDGDDTRSNVKNFCAGLKNI
IDLFSFKDIAKQLKKAAFTFIRGDSASRLDRFYGPIEFVNEVIDLQNIPVAFSDHHAVIIKVNSLKDHICAKGRGYWKIN
PSLLDSEEISKRFQDEYIKLKSRSTYNTDLNSWWHFILKPKIKQFYKTESWKINSATQLQKSNYLSELLKMAERQHKGEN
LTAEIAACKTKLMEIEYNRLNNYSKKLSNLNISEGEKISVFQVSKQINQGHDSQYLRLQGSDGIITEKNELDELIFQHFS
KQFDIDNTSTNLRNEENPLDSISKSLDDDDREMMIDPITEEEILNILNACNKKKSPGIDGLTYEFYITHYDLIKKDLTKL
LNGYLTATYSPPKEFTDGIVILIPKKGDNKQLENYRPITLLNTDHKLLTKIIAARIQEKMDKLIGPGQSACVKNLSCSDN
LKDIRKMMTKAAETKRFKGFLLSLDLEKAFDRVNHSFLWDVLMKFGFPEQIINCVKKLYVHASSRVLYNGFLSKEFKIKA
SVRQGCPLSMLLFVLYIEPLIRRIYANTCGILAYDKILKVTAYADDLNVYVRNCEEFDLIIQIISSFSKFAKIRLNQRKS
AFLRINNCISGPFLIPEADDLKILGVVFKNSWNSSIDQNYNKLVNDIKYRLTLNSFRKLSLVEKCWFVNSFVLSKLWYIA
KIFPPKNIHLAKIKASVGNFIWNNQIFKVDRRQLYLSAENGGLGLQDPESKCKAIFIRNVLQSDCPSNDEYLLRYKYTSK
LSRNSREWLETANMIKSNYNLHSCKLIYLYFIDEFKFKPKVEIEYPQMSWETAWLNLSSXFLQPEDRSSVYNFLNDLIPN
RFKLFQYGIRKVTDNKCEICFEIDNNLHRLKSCPNVMEIRNWTEQILRTRMNVRCNDLEDILFSHIDKNSIQQKAALWIT
VHFVGFVFRKFPKCSLYVFKKSIRELRWNKRKQFVLHFGTLLNIC
>Tx1-10_CQ_pol#LINE/L1-Tx1 1570-4839  [Culex quinquefasciatus]
MMNFTYKLGSVNLNSSNSLVNKQLLKDFIYINDLDVIFLQEVSYDNFSFVPSHAPIVNLSDSGSGTAILIRKTFDFSSPL
LDPNGRISSVIINHINFINVYAFSGTNRKKERDDLFLDNMTIHLNKAGSKFCVVGGDFNCILNAFDTAGSNKNYSTGLKR
LIEIFNFKDIAVELRKHQFTFYRGDTESRLDRFYAPSAFLENVLDFTTLPVAFSDHHAIIMKIKSCSDEFSLKGRGYWKI
NSTIANDSSVSDQFSECFETWKLRHQYTDDKNLWWNVIAKKKFKQFYQNKSWELNQQISNEKSYFYRKMLEWMDKKNRNE
ETLLDIKMIKSRLYEIESNRMKHLGNNLNNGNILQNEMVNLYQVSAQVKRFQSSSNLRLKDGNILVVDINVLKNKVYQYY
ANLFTEDNNSSQQLSAEDPIHCLNSSLDQDDRDDIMRPITVVEIEEILKNCTRKKSPGPDGLTYEFYINNFDSLKADLVL
LFNGYLSGNMRPSKTFTDGIITLIPKKGANSVHLDDYRPISLLNCDYKLFMKIIAERLKFYMGKLLGFGQTACLPNSSCI
DNLKDIRRILTRACESKRFKGCLVSVDLNKAFDRVNHSYLWKVLEKFGFPTQLIDCLKNLYANAASRVLVNGFLTPEINI
SSSVRQGCPLSMILFVLYIEPLLRKISVTIPPVLVYGKFINVLAFADDIVVFVKNDYEFDNFIKVIDTFSKYASIKLNFA
KSVFLRLNNAKVGPQKFKETEALKVLGVIFEKSWSSTVNNNYKRLVTNINLSMLQHNVRKINIIERCIVLNTYILSKLWY
VAQLFPPANSHLAQIKSACGKFIWKGYIFKLDRKQLYLDFFKGGLRLVDPEAKSKALFLKNIFYNLNAHGTQPDESYLID
LDSPQKLTRNAREWLNEGKAVVANHDLNTVKLMYNYFVSLNSESPAIEGKLSLKWTLIWKNCSESFLEMKDRAKMFGFVN
DLLPNKEKLLSYNIGNLTSAVCDKCGGIDSNSHRIKECPRAKEVWEWSSRIVQNRYKMNVVDLEDILQLDLDEKSESEKA
ALWLAVKTISYNLRVSEPSLFVLKKEIREHRWNERKNIRIIFGNSLNIC
>Tx1-10_BF_pol#LINE/L1-Tx1 1-3609 Fragment  [Branchiostoma floridae]
SFNCNGLGNFYKRRGVFTWLKEKPYHIYCLQETHTTALDEAKWQNEWGGKIYFSHGSTRQRGVAILMKNNTSFQVHQFKS
DDSGRWIILDIEVNNFHFCLVNLYAPNDDSPSFFKELEEHIATFDISNESLIVVGDFNTVQNALVDRSGVQQRNYNPHAL
DAISELKGKFDLHDIWRFRNPKSVRYTWRRGIQASRLDYFLISFSLLNRITKCCIADKFKSDHNLISLSFVTTDFPRGPG
YWQFNLSLLNDKTFCLKTKTVMTEFFQNNIGTASPQIVWDAAKCFFRGHCIKFSSYKKKQYLIKEKQLTDEINALQCQID
NTPSPSQAQLDEMTCKQNSLETLYNERLNGLLLRSRSRWMELGERCTKYFFNFIHRNYARKNMQRLTRVSGEEILDPQEI
LSEQVKFYSNLYSFEEPPVPLTDTYCSTFFPPQYSKCLSHAQQQDCEGLITEEEVKHAISTFQNGKAPGHDGIPIEVYRV
FFDTFKVPMLQCFNFAFDNGHLSGTQKQGIISLLLKKDSKGVDKDPSIMGNWRPLTLSGCDTKIISKCIALRIKNVISDI
VHQDQTGFIKDRYIGENIRKLIDIIEHYDDEEKPGLIFIADFRKAFDTLRWDFMFKCLEFFRFGPELIKWVKVLYRDTSS
SVINSGYISKPFQLSRGVRQGCPLSPYIFILAAEVLAIKIRSNQSIKGLRVYGKCSKVSQFADDANFPFEPKLDSFYSLL
SDIDGFSNISGLELNAEKCKILRLGSLKHSKFRLPTHLPVQWVDGDVDILGVHIPADMNLIVETNIEPRLDKLDRILRPW
KGKSLSLYGKITVVNSLVVPQFTHLLQTLPSPNDSFFKRYEQKIFSFIWEDGPEKVARKVLYNSTENGGLNLINLRVFDQ
TLKASWIPKLYFHPEWFSSMMIHYNPRLSLQLLPFFQLSSITFLKLKGFILEALAAWCKFQYTESETPVSVRQQILWNNS
SITIEGRPILFNALLNRKIIFINDLLSEDGHLMSYHDFCSIYPDTCNQLRYQQLIASIPSKWKTLLSIEASKNVICVPHQ
KNYKWLSQVKINKSIYNFFLLSMNQTTVAHKIRLSWFDYFDTPIPWKSVFINLVKSTIDPSLRYFQFRLLYKYLPTNRML
RIWNLIETNLCSFCNSDEKSYVHVFYECIYDVSFWRKVQEWLLQECGLDIHLTSFLIIFGDLSTNASSVTKMIILLGKLF
IF
>L1-56_XT_gag#LINE/L1-Tx1 181-1464  [Xenopus (silurana) tropicalis]
MEDLFGTPSDLQTRYKNTAVVEIPEEHRGAAGLFFVVETLLKECEITPNDLFCLPEYYNRGIYELVFHETVKYHDFRKVF
MEKQQHEKLSGCKVSFKHQDNVRMVTVSMYNTYVPTKEVLEYMKMIFEEAEYVKDVLNEYRIWTGKKLFRVKLRYDNSSE
DGLDHPIQTISLRGNRGFLKYSGMPTFCWKCNDFGHMSNSCTVGLVCRVCAGMGHDDEECKIIPRCSICDVEGHHIMNCT
KSSYASKVKKIPAGKENKNQVPQRSVRVEQNPVENEARPVVNQKLTILEGKKAKKMMTRGDKRKKRRTEGVFSDEESEIR
NEEEGEEENAEEERIVEKEIVEEEKTVEKENVEEGSEGVVMEREEGEREEDQVEVVEEEEGVWTIDSMDLSVFSPVSESE
FSARVDRGLSRLSATPDCFPEGSKNDPG
>SHALINE20_MT_pol#LINE/L1 90-4233 via tfasty with OSLINE1-2_pol, 6 frameshifts and 1 stopcodon.  [Medicago truncatula]
MKCLFWNLRGLANSPTKLALKKLLILHRPDLCFIAEPWMHIDNFSKLWLDRLGMKVFCVNDRGNLTPNLWCFCSKTLTPT
LINMDDQHITIQITLNAMCFTLSAIYASNSYMKGGIYGKLKLIKKYNAPWCFIGDFNTILGAHEHRGTNRPARAMKDFLD
WSDTNNLIHLPTRGAQFTWANGRGGRRYIERRLDRAICNQEWLDICSLITCSTLIKIKSDHFPLLFDFKTVTTPFVSQFK
FLKMWTLHDDCRNLIQDSWNXNVVGCPMFILNQKLKSLKQKLKIWNKTVFGNVHMLVKEAEQKLISIQDQIDINGVTDDL
LDQQKNAQIALENALNKEETFWKEKSKVXWHSHGDRNTKYFHRLTKIKNTSKLITSIIDGDEMITDPDQISTHIINYFKN
IFSTNYSVQDLQVDDLVDEAIPNLITDDMNNLLTMLPTHEEINHAVFDLNKDGAPGPDGFGASFYQTYWDIVKKDVINAV
LEFFNKDWILPNFNANTIVLIPKIPDAxSVAQYRPIALANFKFKIISKILADRLAQIMTNIISTEQRGFIQGRNIKDCIC
LTSEAINLLHKKSFGGNLAFKVDISKAFDTLEWKFLLKVLSSFGFNDKFCNWINTILNSATLSIYVNGKLNGYFNCKRGV
RQGDPLSPLLFCIAEDVLSRSISKLVDQGKIELIKGTRSVQVPSHSLYADDIMIFCKGKLSSIHALMDLFNTYAQASGQI
INPSKSTVYSGSISDARINQITNLIGFNKGSLPFTYLGVPIFKGKPKRSHLQPIADKIKSKLSAWKASLLSIAGRVQLVK
SVIQSMLIHTISIYSWPNSLFKDMEKWIRNFIWSGDISKRKLVTVAWKKICKPFDEGGLGIRSLYTLNEATNLKLCWDLM
HSNEHWAILLRSRVLRDRKVINHHIFSSIWSSIKTEFNIIMDNSTWLIGNGKNINFWTDTWCGKPIASLLNFPDIVHSTL
TTRVSDYINNSHWNIPQSILNSFPNLSQLVXQVTIPMDEKNDKLVWNTSSTGDLSLKEAYQFKYTTGQNINWAKNLWSPD
IPPSKSLLVWRLMHNKLPTDDNLTHRGCNLPSMCSFCQAYEETTFHLFFECSFALKMWNWLASILNISLIFNSPMDIWNI
LERNWSPQCKVVIKACIINIFNTIWFRRNQIRFQDKMIHWRTAINIIISKVSLSGNITTKAAAANMLEFTILKAFNVNIN
PPRAPIIKEVIWTPPILTWIKXNTDGASTKNPSRASXGGIFRNSEGVCLGGFAQFLGNANALYAELFAAMRAIEIAASME
FSNVWLETDSQLVILAFKSKSIVPWSLRNRWNNCIQFTHRMRFYGSHIYREGNICADRLANFGLSLSSSELFWFDSIPDF
IRREYNRNRLGLPNFRFVTF
>SHALINE5_MT_gag#LINE/L1 1565-3126 via tfasty with LINE1C_MT_gag, 1 frameshift [Medicago truncatula]
MLMSFRDKVLESQPFVIKEKVDLVANKLAQVEHIKGNNRLMPMLHVQDSVMEELSVPYKGCLAVKLLDKKLGYNMMKTKL
EAVWKPNKGFDLMEVGNSFFMVKFDDEEDKNKVINGGPWMIFDHYLAIRQWTPTFNAATATIDKTMAWVRIPNLNLVYYD
ESLLWAVASMVGTPVKVDIHTLRVARGKFARLCVEIDLTKPVVGKVGINGEWYHVQYEGLHVICTQCGCYGHVLKDCSHN
LKSTTVTPESMVAPATAGPEVETETVHNKNGKEINVASRISGVIIEEISTKAVNLSINGDPEFLHGDWIKVERKKRINKM
NVRGPGGDVKAEKFQNLKNRIKELNAESSNILHENRNVGNNFQRNNSPNTSIKVGKNKQKRSRGDIGPSRIGPNNEKHNH
IARSSGVYKGGYTATLIHEPQKSSCAEENGPTVKACAKLDSSHSNSDIDINSKGGRNGNMSIVTNGDDSSQQHASIAATP
REEIFLSHVVNKKKEDHDNISSMDGEDQNMGQAHDIQMHMI
>TA11_pol#LINE/L1  gi|2129709|pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis thaliana retrotransposon Ta11-1  [Arabidopsis]
MSLVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGYERVFTVNPIGLSGGLALFWKKGVDI
VIKYADKNLIDFQIQFGSHEFYVSCVYGNPAFSDKHLVWEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFL
PFTDMLDSCDMLELPSIGNPFTWGGKTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKTKEEYRG
NFRFDKRLFNQPNVKETIVQAWNGSQRNENLLVLDKLKHCRSALSRWKKENNINSSTRITQARAALELEQSSGFPRADLV
FSLKNDLCKANHDEEVFWSQKSRAKWMHSGDKNTSFFHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFK
STDPSSFVDLFEDYQPRVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSIICLQVTKEIQNFFLLG
YFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCSVLYKIISKIMVRRLQPFLPDLVSPNQSAFVAERLIFDNILIAHEVVH
GLRTHKSVSKGFIAIKSNMSKAFDRVEWNYVRALLDALGFHQKWVGWIMFMISSVSYSVLINDKAFGNIVPSRGLRQGDP
LSPFLFVLCSEGLTHLMNRAERQGLLSGIRFSENGPAIHHLLFADDSLFMCKAVKEEVTVIKSIFKVYGDVTGQRINYDK
SSITLGALVDEDCKVWIQAELGITNEGGASTYLGLPECFSGSKVQLLDYIKDRLKTRLSGWFARTLSMGGKETLLKAFAL
ALLFYAMSCFKLTKTTCVNMTSAMSDFWWNALEHKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLLQFPN
SLFARFFKSRYYDEEDFLDAELKATPSYAWRSILHGRDLLIKGFRKKVGNGSSTSVWMDPWIYDNDPRLPLQKHFSVNLD
LRVHDLINVEDRCRRRDRLEELFYPADIEIIVKRNPVVSMDDFWVWLHSKSGEYSVKSGYWLAFQTNKPELIREARVQPS
TNGLKEKIWSTLTSPKIKLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVPTSQF
GFQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPLKSIEKIRDDVQEWFLAQALVASVDA
GETVCSAPCPSSWEPPPLGWVKCNISGVWSGKKRVCGGAWVLRDDHGKVLLHSRRAFSNLSVKKDALFCCVKWALRVCLA
TDSLRFCLLLSLGLTVRFCQAESLALFCFSCFRTNSFFGEDWRLEGLGGKGRF
>Polinton-1_CI_pw#DNA/Maverick 11962-12384 [Ciona intestinalis]
MYEHRRQFCCDQTKELYVRHYQNQQLGNGLPVFSGGDAQRGYGLGSILSGLGKAVMPLLKSGAKAVGQQFLKAGVSFADD
VINGGSSPRKAGIKRSRELGRTVLNMAGKTLNTSGSKGIKRRKTTTSKSAKRRRKHKDIFA
>KibiFr1_pol#LINE/L1-Tx1 gi|34392555|dbj|BAC82606.1| pol-like protein [Takifugu rubripes]
MRGTGGGSGQARSFSATNCAGVGILFSPHFKTLSAETHHIMDGHVLMVKAVYENMKLVFLCVYAPVLSRDRMNCLNVLCN
VVRGVQDEFLFMGGDFNCTVNARLDRNHLEPHPASSARLKRLLETYDLKDVWRGFNNATRQYTWAHCWDNSMSLARLDRL
YCFKHHLSIFKNCHIVPVGVSDHSLLKCEFFIQNVKTSSAYWHFNTALLEDHAFRQALQVLWDAHRLRKPMFSSLHRWWD
FGKTVTQQFCQQYTRNVTKHITRSLQDLETEVQNLLGCTENRGYVEVHPSIHPSILYRLSGGEVLQSKNAAIASLLGTTA
QGALVCSRYMNASMMDAPSKFFFSLEQKNGQRKVIHCLRADDSSDITDTARIRRHGTCFYKELFKSYAVENPGLETEFLT
DLSQVGESSNTLLSADLTLEELYVALMSLANGKAPGIDGIPVEFYKAFWSVVGKDMLEVFLESWRTGLLPRSCRRAIITL
LPKKGDLQDLKNWRPVFLLCGDYKILSKALAIRLREAMAEVIHVDQTYCVPGRRICNNINLIRHVLDISSSLGIDIGLIS
FDREKAFDRVEHQYLWNTLAVFGFSPGFIARVQVMYRDVASILKINGGLAAPFTVQRGVRQGCSLSGMLYSPAIEPLLHK
IRKTLMGVSFPGCPTAVKLMAYADDVVVIVNTQRDIQVLGETIELFKALSSAKVNWTKSVACATTRDFLGGWWCWVQTGG
LKYLGVFLGNDESLKKNWEGVLEAVEGRLKRWKWLLPHMSYRGRTLVINNLVSSFLWHRLAVVDPPADLLSRVQTVIVDF
LWDRLHWLPQVVLFLPKEEGGQGLVHLASKRAVFRLQFIQRLLYGPNDLVWRPLARLTLQRIKGLGLQESAFLMELKNVS
MSSLPSFYQGLFRTWKLLWKQRANHQSSFWGETVSHGSLLSPPSWAGATVAEALCTAGVATLGALREATGPDLKETTELQ
VRLGWRSKRNVKRLLSHWRDCLTERERQLLREHSQRMTSPCPEHPFPSLVMRPGPDQQLEVTLETAESKALSRLMVRGLN
RQRLERRSRSPWRAKLTLGEEVRPEWKSFYKPPLSKKAADLQWRLVYGVLAVNKFVSILSLSVTGTCPFCEAVETIVHCF
AECPRLLPLFPLLEALFRRAGEAFSLRTFVYGFKYTKAKKDKCHLMNFILGQSKMAVYISRRRKVEDSVDCDVVLLLSRR
IKARILIDFHFYRKMEDLEQFVRTWTYGGILCSIQLEDLVFSDQLV
>NLT1_SP#LINE/L1 3-1490 [Strongylocentrotus purpuratus]
VPFGKIVNIVKILGIQFTLDVESQEKINYKEILSKIKKLLMWWKQRDLTLMGKIQLIKTFVLSKLVYVSSLTPVPPWAFR
EIEVLIFDFLWNGKDKIKRSTMFLDYDKGGLKLTDFQLFIRTQRIMWMKRLITGDSNMIWKRYFKYLTRKYGGLLIFFSN
VSPDLLALSLPDFYRSMLEAWLGTKAFLLKNEISKRNQIIYNNRCIRIQGQICFHEDLFLKNVFKIHHIVDKKGELKSIT
EFKKMGLNNIEINIIKQLYEGIPFSWKTLLNIYEHPCEDTELSLEFIINGNPHSLQGITSKYIYSTLLKMRTEKSYATCN
LERTYNMVENDTRTIFLRPRKSTXDRKLREFQYKMLYNLIYTNKHLYTFKHAVSNLCSFCNKHEETYEHLFFTCEKVANI
WKDCGDLFSLSALKNLHWQEIHIGIKRSNAGEEQLLNHIILLTKHMIFKYSSTQNRPPIPQEIKKRXIENRQEEKELAGE
RGTLTLHFRKWDNFHS
>LINE1B_MT_pol#LINE/L1 6-2726 (LINE1A_MT_pol 100% identical) [Medicago truncatula]
WDVVGKNICEFVRDVWREPDKISTVNKTDICLIPKINQPEFVSQFRPISLCNTIYKIVSKVVVGRLKEYIPHIVSPHQTG
FVPGRSIHENIVVAQELAHSMNRMRGRTGYFVIKVDLAKAYDMLNWDFIWRTLKEIGFPDVLIDLIMHGVTSVETNVKWN
GARTEYFRPQRGIRQGDPISPYLFVLCMDKLSHLITHEVNQGRWKALRAGRRGPVISHLMFADDLLLYGEATTSQMKCVT
DTLKTFCDLSGQQVSQEKTSMLFSKNVHRGVRQQLLLLCGFKETSFLGKYLGVPLLGRAPKRADFQYVIDQVNGKLAAWK
TNQLSFAGRVTLAKSVIEAVPIYPMMTNIIPKACIDEIHKIQRQFISGDNENNKRYHAVSWETVSKPKVFGGLGLRRLNV
MNKACIMKLGWSIYSGSTSLWAEVMRGKYQRSDILAELFIAKPSDSSLWKALVKLWPALERNIFWSIGDGKSVGAWSQMW
IEERLCVSELEIDIPQQCKEMKVADLVDFNGNWNFELLNQWLPYDVVQRIMTIAVPDENDGNDKQMWSGSSNGKFTIASA
YHMLSKFDNDAQDEIWLKLWKIRAPERIKHFMWMLYHGRLLTNLRKHKMGIGNPMCRFCHDEIESEIHVLRDCPKATALW
LCVVDNAARTSFFEGDLSNWINFNLFTNVYWNHNVEWRDFWATACHAIWNWRNKETHNDNYQRPLHAKNIIMSYVNDYHN
AIAKSVIVTSQLRHLEEVGWKEPPIGWVKINTDGACKDGSIAGCGGLIRGSQGEWLAGFSKFLGKCDAFIAELWGVLEGL
RCAKRMGFTAVELNVDSLVVVNIITSGKESNARGRSLVQKIRKLLQMEWEVKVKHSYREANRCADALANIGCIMENGMMF
YESCPTQINHLLAADQAGVTFPRLIKM
>OSLINE1-5_pol#LINE/L1 851-4524 via tfasty with LINE-1_OS_pol, 1 frameshift and 1 stopcodon.  [Oryza sativa]
MKGIFxNSRGLHDLAKYWYVAGNIKEHNLDFVALLETRKNDVSKTNIDCLASGADFVWHCLPPRGRSGGILLSINAAVMD
LSLIVEGEFYVKFHLRNKEDRFEWILMAVYGPAQDEFKSSFLAELVRACQQNPHPTLIGGDFNILRSSIEKNNKRYNDRW
PFLFNAVIDSFDLREIALAGRQFTWANSLANPTYEKLDRVLMTTEWESKFPMVSVHALEQGVSDHTPLLLDSGSTAFIGN
HKQFKLELSWLTHDDFHDRVVKIWNKPVKGRNLVQQWNNKMSALRKHLRGWAAHMSGMYKQEKKSLQSTVDELDIAVEVR
VLTEVERDQLTQARDRLVMLLREEETKWFQRAKTSDVRLGDNNTKYFQMVANGKHRKKRIFYLEQDEGKIEGQAALKAYI
TSFYKKLFGPPEDNPFTLDESRSGDISQVTQAENEFLMAPFLEKEIRDAVFDMEHNKAPGLDGFPAEFYQKFWEVIKHDL
MNLFHELHTGELPLFSLNFGVITLLPKVKEANRIQQYRPICLLNVSFKLFTKVATNRINSVADHVVSPTQTAFMRGRNIL
EGVVILHETLHELHRKKLNGVIFKIDFEKAYDKVKWPFLMQALGMKGFSTKWISWIESFVSGGSASIKVNDDVGPFFQTK
KGLRQGDPLSPMLFNIVADMFVVLINRANVDGQICGVVPHLVDDGISILQYADDAILFMDHDLEKARNMKLLLCAFEQLS
GLKINFHKSELFGFGDARAMEDQYTELFGCSSGEFPLCCLGIPIHYRKLRNADWKGVEERVEKRLSSWKGKLLSTGGRLT
LINSVLSSLPLYMMSFFAIPRGVLKKLNYFRSRFYWQCDDQKKKYRLTKWSIMCRPKEQGGLGIHDLDMKNIALLSKWLF
KLLSTDGVWQQLIRNKYLGSKPVSQVEFKDGDSQFWASLMKVKRDFLLFGKFIMRDGAQIRFWEDKWLGEAPLQEQYPCL
YNIVRNKHDTVAKVLQNYPPNVSWRRDLIGPKLVAWNNLLPRIANLVLTQDQDKFHWNLTQNGEFSVKSHYLALVHSDLP
NIDKVIWKLKIPLKVKIFLWYLRRGVVLTRDNLAKRNWQGSKNCCFCHKDETILHLFYECRFARFVWCIIQVATGLFPPR
GVSNMFGNWLRGIRKDLKSLILLGAATICWPLWLCRNHMVFDKRKISSPLQVIFLTIHFLRTWAILQKPGSWDLVAAACQ
RLEQVVRECFTKGHGWRSSLRIGAP
>RAVLIN5_MT_pol#LINE/L1 1723-5798 via tfasty with ATLINE1_1_pol, 5 frameshifts and 1 stopcodon  [Medicago truncatula]
MEALLDTTILSWNIRGAQNSKAKRQLKELMRKFRPSFFAIYETHVPFTRLSSFWTNDGYTPEHIIEANGHSGGIWLLKHS
ADNTTSTITDSNPYSITFTISLGDATTTCTCIYASPNSTMRTTFWNYLSNLNRTITGPWMLIGDFNETILPSEQRRGLFN
HTRATLFSNFMNHCNLLDLTTTGGRFTWHRNHNGLRILSKKPDRGIANINWRLSFSEAFVEVLCRTHSDHNPLLLRFGGL
PLARGPRPFRFEAAWIDHKEYADLVSRAWISSNHNTTVALNNVRENSISFNHDVFGNIFKRKKHIENRLKGIQIYLERVD
SLRHSLLEKELQQEYHHILFQEEMLWYQKSRENWVKFGDKNNSFFHAQTIIRRKRNRIHRLQLSNGIWSSETSILQDEAQ
RYFKNLFCSTVHHQNRHFHVGLHPTIDDDEKNSLTKPITKEEVSAALNSMKPYKSPGPDGFQCIFFKQYWHIVGEDIFQL
VSKAFQTGFFDTTISDTLIALIPKIDPPKTYKDFRPISLCNITYKIITKVLVNRLKPILNNIIGPYQSSFLPGKGTSDNS
IVLQEIVHFMWRSKQKKGFVAFKLDLEKAFDNVNWEFLNSCLHDFGFPSATIKLIMHCVTSSTFSVLWNGNKLPPFKPTH
GLRQGDPLSPYLFILCMKKLSLAINNAVIQGDWDPIRISTTGPHLSHLLFADDVLLFSKAKNSQFRFIKDLFDRFSQTSG
LKINLSKSRAFYFSGIPHQKIANLTSISGIRRTPSLDKYLGFPILKGRPKRSDFNFIIEKMQTRLASWKYKLLNRPSRLA
LASSVLSSIPAYYMQINWLPxSICDNIDQTTRNFIWKGANNKWVPLVGWKKIAKHKHLGGLGLRAAREVNTCLLGKLVWD
LTQRNNKLWVNILANKYSVGHNFLYASTTSSSSPTWSSIIRAKNVLFSGYSWRAGSGSSSFWFSSWSNFGPLGSLVPVID
IHDLHLTVKDVITTNEQRTQSLYTPLPPAVSKFINNSNFRFNAAIEDVFIWHHNTNEIYSAKSGYNWLLSLQGTHDVTQS
WSWIWKHKISEKCKFFIWLACQNSIPTLSLLHHRNIAPSATCTRCGDFEETIFHCVRDCKFSRDIWQHLGFSDHSFFAAV
CVRDWIKDGLNGANSILFATSLWWIWRHRNSMCLSDEAMPLNRLTWNIMTFVNDVKLCFHQQHPVTESVRHIRWNNNNFD
CAILNVDGSCIGSPTRTGFGGLFRNNAGFYLLGFSGSLPSSADILEAELSAILHGLTLALDNDIEELVCYSDSLLSINLI
TGNSSKFHVHAVLIQDIKDKLSQLNCSLHHTLREGNHCADYFAKLGASSDAALLLHSSPPDDLRPSLRNDATETLFPRP
>RAVLIN5_MT_gag#LINE/L1 9-1680 via tfasty with LINE1C_MT_gag, 1 frameshift and 2 stopcodons. [Medicago truncatula]
MNSDFVFSAHDTTNMQQSKKPPDPSKPSTQKLSFRDKLLESNKEIPIREKEDMIEKKLVRIELEDGNRLLPKIYIEPQVF
QELCTTWKDALVVKLLGKSLGYTTMKERLQKTWKLQGGFDIMDNDNGFYMVKFDQAADKEKVITGGPWLIFDHCLAVTHW
SPEFASPNAKVDRTVVWVRFPGLNLVYYDESLLLAMATTLGQPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGH
WYKVQYKGLHLICTNCGCYGHLGRNCCSKPPAAEPVTLNHLKTTGDHHTQKTNPTQSQTDPHQNPTDPQAIHSRSLSAVT
QSLPADHNRTTLNAGLMETTSEKGKSTISNEGNHLLHGDWLIVSRRKKFHNNSTLNAPKTVTQKNNRFNALSSLTNQNLT
DPTNHKIPQWSKTNETSRGRTNFGPKGADMRTHICQSLRFSSANPLAILKPLLSLSLDPPLKLRTRLFPKSLQLNLKCLI
KCPTxTKKSRQNYPQHTNHSHHxPYIVFTPPFNHSDQNHTAMDTISPSEMLDDTDVSLANSDDTLENSNSKGEDMVT
>Polinton-1_CI_pro#DNA/Maverick 1674-1225 [Ciona intestinalis]
MNNTQIQNIIAKFSVCKTAFRGVYPSDLAIGLKVTYPSVFIFNTDPSYKEGEHWIAIHFDINGKCQFFDSYGLHPYLPEF
VIFMEINSTSWSYNEKTLQNIFSDVCGYYCILFVIYKCMGRKLADFQAIFTENTKLNDLTVRYILSDYVT
>L1-2_SMo_gag#LINE/L1-Tx1 222-3584  [Selaginella moellendorffii]
MENSRKGVTASTPINLSSQGRGVRGRGLSIRLPRGGLLQGRGPGTRTAASQDRKGPSVSTARTLLCKAASEPRKAAAQQD
ENHGIEVVDVSRLGDGQVLEKAGSXSQARGEVPTESGGEDEATSPHPLAWSLAGVQELREGLGPVTSQEGLRGIIPSTFA
VEGIHRDGCLTEVQERRTRVRSGVTTRAAARAAAAKPGRGTGELKSAPPRTSKNRGEQDDALLSCRLNMEASLEGEFTIP
HSEAQPGQEISREPDRSAVVLGLNKELPLRTLKFAHRCLSDLTNKPRASLPXSPARSSSVRPRSSPQXPVTRRCTDLRQG
GDSTDCLHLVLPKPASGGIVFWNSEQFTEQVCRESAQRIQQEVSQLTHQLEDGVDVGNISLWDARRAALAILTENLRTRK
DWAAGTLPAYGNASSSCPAGGNPPSHPETPADVAGLIPDPVHARVQEETHQVDPAHLQQVRKSDPDSPTTPHEEQKESLP
SPFPRLDKAGMLVWDPRHFEERIQSSPLPVRKELQSTLMCTIRELDLNPLGEDLVLGPALRQAQELITKAVATQQADLFD
AWAQEQGGKVDTMPTPTVEEGLEEPETEPETERSLEEQSDGTLQFQDRDAFNKRKTKREKKKVKRATRRKLKTLRLAKED
PAWTNTVEAFLEEEHAPPDKRTESRAHQNQEVDTPERVAKAQSRVRKTRGCGKVVEALHSSDGNSDVNKEHTSHNVNGGT
PGQAEVHKVAAAGEGGSDLVHDDTRGKAVPVKLAETLQRAVAEKEEELRKKALIAVFRGKFPTGRMANDWINATLGQGIL
MKXMLPHGKGCYTVVFETEEARSQAEAMHGLIDENWAVSFHPWIPRFTAEDQARLKGGSFPVNIALWDVPMEMRITLVIQ
ELVEGSIGQIAAGLDTVEAEGVLGPIRLKVFVSAPAEIPTEIAVLGQYIRIQTENSEPRCNFCQRAGHREEACSVKRNRL
ASQKPFELPAEQERILKARPPDQAPHIRFPVAPPLLGSSSQPKLFEGPITDVEGDGFQPVLPRTVGMAVRWIPPKRELSP
TEAGDWLMCRGNTAFPEVVTIGDYHTRMESAITEWTGFAKYTVRGFSWTKHRGKMTAVWTISTEWRARPRNSSLSWKYVA
P
>L1-2_DR_pol#LINE/L1-Tx1 1730-5581 Named MutsuDr1 by Kojima and Fujiwara gi|34392566|dbj|BAC82613.1| pol-like protein [Danio]
MMFFMNVFMSFMNVFIFFMVLGIVSFNARGLLDIRKFEKVKEMCKREDVILLQETNWREECMKEIRKRWSGEMLYNNGDG
RLGRGVAILLKENSGVLCKTIYNDKEGKCMICEMEYERKKVIMVNVHAPTEENKKKEYYNVLRDYLKKHERVIIMGDFNT
VFSKLEMAEGMVFKTDKGRKELKILMEEMNLIDVWRERNEQTKEYSRRQIVGNFCCQTRIDFILCTRNVEGFINKIKYEE
TSLSDHKPLFMKLDWSNVKRGPGVWVLNTAVLKNEDYVLSVKEIIQKEKGNEIYNEDKRMWWENVKYLVKKFTIKYCRQL
QNCKKYKEKELKEKLENELKNENGKNIQKIKELQGRLNEMEEEKFEGARLRSKAKFTVEGEKCTKFFFDLEKRRGKSEMI
REIRSKNGNVVEQHEEILEEIRSYYEKLFCTEGIKEKEKGELLNLIKSRVEEGEKRECDEEIREEEIKRAISGLNKKKSP
GIDGLGSEFYIVFKDILSSILKEVYDEIFENGEINKRMGMGLMKVIYKGKGDKVDLKNYRPITMLNTDLKILAKVLANRL
KEVMPSIIKTNQAYSIKGRDIADTTMSIKDTIRYINDKQKDGFLISLDFEKAFDRVEHDFLFGVLKSFGFGENFIKWVQI
LYRGAVTRIKCNGFLTDCFKIRRSIRQGCPLSALLYALVAEPLGLAVKHEDRIKGIEVEGGVNKIFQYADDTTLILQDLA
SVKQAMETVQHFCKGSGAKINENKTGYLRFGRTEALSGHFTFKEMDEIKILGIVIGRDEKKAEVTMWEEILGGIERRLRF
WKLMSLTLKGRVLILSVLMVSKLWNILYVSSMPLWMEKRLKQCFLDFLWEGKPPRIAYATLIGEVGKGGLGLIDVEQRKN
SLRVKMVRKYLDEDNKAAWKRTMEYFLSKSGNFNMGDNILYMRMKKFMTEGLPDFYKELIGAWGKFLTCVHFNIQGRENI
LNQPLFLNSGILNQEKVVFFRKWWEVGITRVRDVLYEFKEGFLPVQYVIDVMDEAKEDFNRQDLIKEYDIIKNAIPAEWL
TRIENMEENKQSKDVIVRFGEKWWNLKDSTVKMIYGFFRDGVFKKPRANENWIRMFKDVNEDNIWANIKGKLVQSKVENL
EYLIRNKAVFTDIILNKIGMEESVTCKVCQDADEGFLHLFLYCNELKDFNEKCKSIILTLKGERDDELEWEKVLMLGVNK
ECNNEKLINLLVMLRKSAIWERRVAAKKEKAVLDVWNVFKRKVEKYVECLFYYFKLEDMQEAFYDVFTQEVSKILNDTGM
KMPF
>Polinton-1_CB_atp#DNA/Maverick 6084-6824  [Caenorhabditis briggsae]
MKSDFTDYSIQNYYSKRNNNPLLPSSLRACIIGKSGCGKTNLLMNLLLDEYCGEDYLDYDNLYIFSTTLFQPCYQALING
FANGLSKKEIRECFRTQNFMVDKKENKEISIHISENCDDIPDPSSIDPNRKTLIIFDDLMLEKQNKIEQYYTRGRHNNID
CFYISQNYIKLPKNTIRENANFFIVFSQDKMNLEYIYRDHCGEVDKPTFLEMVTEIWKEKHNFFTIDKTSDSDNGKFRKM
LKYFFVL
>L1-9_CQ_gag#LINE/L1-Tx1 2-745  [Culex quinquefasciatus]
VIDNDLAQQIVDQHDGKHAIEHEGKSYPIRIVMEDGAVDVKLFDLSDEVSDDEIIEFLSDYGEVLSVRDLYWEDKYFFRA
IPTGVRVVKMFVERNIDSYVSIGGLVTQVQYHGQQHTCRHCNEFXHNGISCVNNKKLMVQKTYADAAKQPKQVTKPTPKS
TPRLPTGSQLNQVAGPSQPRLNDNIMLPPKDRLVFTKLTPQPQKSKGKGSKTDGNDTDTSSTSTRSLRSKSKKHKRDGAV
SVDEGMVL
>L1-4_CQ_pol#LINE/L1-Tx1 1255-4446  [Culex quinquefasciatus]
MDFLTYNIASININTISNHTKLNALNNFVRTLNLDIVFLQEVENDQLAIPGFNLVCNVDQERRGTAIALKQHIRFSHVER
SLDGRLICLRVNETTTLCNIYAPSGTQHRAYRENFFNGTLAHYLRQATEYVILGGDFNSVIHTKDATGDNNYSLALKNAT
QQLQLLDAWDTLKPNRVEFTYVTYNSASRIDRFYVSSNLRPQLRDADVHVCSFTNHKALTTRICLPNLGREPGRGFWSIR
PHILSADNIEEFQEKWTYWTRHRRNFTSWIQWWVSYVKPRIRSFFRWKSREKYMEFHQQHQELYAQLRRAYDAYYQDRTV
LSTINRIKSEMLLLQRRFSDTFYRSNETRVAGEPISLFQLGERQRKRTTIEALDVEENTLNSSAEIEQHVFGYFRQLYAE
EQPEIADEFACDRAVSAACPSNASCMDDITTDEIFQAIKSSAKNKSPGSDGIPLEFYAKTFDIIHRHLNLILNEALRGNI
PPEFVDGTIVLVKKKGAGSTIKSYRPISLLNTDYKLLSRILKCRLDRVMRDNQILTTSQKRSNGDKNIFQATLSLKDKVA
QLKERRLFGKLVSFDLDHAFDRVDRGFLMRTMRALGINPRLVELLDKIGRLSTSRVLVNGHLSPSFPIGRSVRQGDPLSM
HLFVIYLHPLIKRLEQICVGSNDLVVAYADDVSIITTCAERIERVKEQFENFGRSAGAKLNVRKTISIDVGYINNNNRLA
VPWLQTADKVKILGIVFVNSVRLMGKLNWVPLVGMLTRQLWLHRMRTLTLQQKVVLLNTFITSKLWYVASVLAITKADVA
RLTRLMGSFLWAGQCIRVPMQQLALPVELGGLNLHLPAFKCQALLVNRHLREIENLPFYNSFVSTTRNPPNLRIVPTNCP
CLKTVCSELPYLPSALQANPSANLLHAHYLNKIDKPKVVLENPTANWNRIWRNIAAKHLTSFERCHYYLLVNRKLSNQRL
LHRMQRADSDMCPNCNNEPEDIPHKISTCPRVAAAWTVLQRRLRNIAQNRNISLTHLLQPTLLAIRRSVKVKVLKTFIQF
VIFVSKDNNVIDINELEFHLDTEV
>L1-1_CQ_gag#LINE/L1-Tx1 162-1610  [Culex quinquefasciatus]
MSSVRIRENTFKLCLKNFPKRPTYEEIHAFVHDKVGLKPTQVTRLQMNHSQNCVHIKCVDLKTAQDAVINHNDRHELVVD
KKRIKVRLMMDDAGVEIKIHDLSENIRNEEVAAYLKQYGDVLSVRDVVWSESFKYKGVNTGVRVAKVVLRRHIKSFVTIL
GETTMISYRTQPQTCRHCHNQLHPGSSCVENKKLLGQKQDLNKRLDLARNQPSAGSSYADVLGRMEEAATPLMPQFTPTN
LTQLHEQLRGVAVEGVEASSSLSATVPSPPPRAEGDVSSTVVPMEQSAIEQAVIEQSVFEQSAIEQAVIQQAAIQQAAIQ
QAAIQQAAIEQSTIEQAKIEQAAIEQSAIQLAANEQASNEQPTNEQAANEQAAIEQSELDQSAMELDAQSDEVKKDGISS
VPNDQSTQQAEGEMSVEADACSSSVSPFVFTPPLPAPSLPNDPLMQISDSESTTDSSQEVDGAPFQKVNRKKRGRPKKPK
LEA
>KoshiFr1_pol#LINE/L1-Tx1 gi|34392550|dbj|BAC82603.1| pol-like protein [Takifugu rubripes]
MHTFRVGTLNINGARDERKRALVFDTTKIKRVDVMFLQETHSNRNNEADWEKEWEGQALLSHNTTLSGGVGLLFSRGFTP
SSLEVEHVVRGRCLMVKARLQNHSLVFINIYAPTNGTEKELSRKKVGTVLNGCGDDLLFLVGDFNCTESFLDRDHADPHL
ASFLSLTETAGYSHGLVDVWRRMHTDSRQYTWFRLSEDRISSARLDRFLLLQTSVFSGCKIMPVGFTDHSLVLSKLGIKN
ILPKSAHWHFNSSLTQDTSFREVLRHFWSGFRGRKSDFMCLGQWWDRGKTEKQLLCQQYTLNATQDTRRSIRDLETEIVE
LESIGSSTGERGYIEILKSKKMVLSNLLDGQVQGALVRPRIQDFTEMETPASFFFGLEKKRGQNRVIHPLFLGTGHELVE
PGQIKKRAVEFFSSLYESEYCEDDVDEFCRELPRVSDETNSWLDRPLQLDELNADLHGMQGRRAPGVDGLTVEFYRAFWD
IVAHDMLEVFNESLASGSLPLSNRRTVVTLLPKKVLEVSSSLGVDTGIISLDQEKTFDRVEHKFLWKVMERFGFNPGFIA
MIRVLYSDIVSMLKFNGSLCAPFRVHRGVWQGCALSGMLYGLSLEPLLSKIRACIDGLILPSFSKKIVLAAYEDDVMVML
FSQKDLDVLVNLMVLFNCLSAAKVNWQKSEALAVGRWTNGLPVLPQNLAWRQDGLKYLGVFIGDEATMKRNWLDTIERVE
GKIEKWKWLLPRMSYRGRTLVPNNLVVSVLWHRLNCLEPPSGLLAQVQRVLNFFWNGIYWVHQGVLYLPREEGGQDLIHP
ASRTATFRIQFVQRFLTGLTDLTWRDVARCVFRQVNNLVMDDALFLTNFKFVKVNGLPLFYKSVVKARVLREPVVHRAML
NVSNKATPRLMAALWTRMVVLEHIVASAGPDLTGSEAVALCWLSALSKQPKVCCNCGGTGSVQGRGIFSWTTAGGPDQMA
TISSQRSSWLPIFGDLGGPLLRPTKVFFLHAVDKEPWNCVKVLNRRGLSKRSASAWPDRLGGDGAHPCWKVLYNPPLRER
TGDLQWRILHGAVAMNIFISRMNPAVSDQCPFCSVQETAFHAYSECERLPVLFNVLKGVLNGFNETFSIRNGAGYKKTVR
NKWQLLNFIWGEAKMAIYISRKNKIEKKGDCEAASVWRCNIRCRLRLEVGFYEMMNDLGQFCDTWCHKSVLCTVAKDQLH
ISFRSNCIAAFIHVYMCYHYCVLNRVFVSLCNCK
>Polinton-1_CI_atp#DNA/Maverick 8209-8817 (Polinton-2_CI_atp >90% identical) [Ciona intestinalis]
MDVSFKHPFTMLITGPTGSGKSVFVKKFIANANVMLNQPPEKIIWAYGVWQQFYDTITNVTFVEGVPEVESFDGKQRVLL
IVDDLMGDSNSKLTDIFTKFSHHLNISVIFIVQNLFYKNQRTISLNAHYIIAFKNPRCATQIATLAQQMYPGKTNFLKAA
FADATKEAYGYLLLDFRQATDERLRLRTRIFPGEIQDVYLPKV
>Polinton-1_CB_pc2#DNA/Maverick 14803-13748  [Caenorhabditis briggsae]
MNFNQSQLFESPRNIIVLGNTGSGKSSFVRHVIYQEFLAGRGFDYIFLICATKTETEENDSCNIVFKNHRIVIDDKYPVD
EMINNFKTWGEENVKKSKLDGKPLPKVLILYDDVSKFLKNKMKGFGDISRHFNMWNMFLVHRTTYLDADTRGSCRVWIFL
SEVDKNIDPFVSKYADNNNFDKCVLIYDTTAHGSKNEQISYLRKSDIKLNYNSDIVLNKTSGIDKEMAANFFYNPEAIDT
TGFSEEEFAKWKVFLAGFKSLNLKIKLKDLLQRPDDKSSIPIERKTLVEREKPFDSRMNFIRPNVKFSIPEEEASTSSEE
KIYADSPSEYESETDDRSSVESISEILSRIHN
>L1-1_SP_pol#LINE/L1-Tx1 125-3942 via tfasty with Tx1-16_BF_pol, 1 frameshift. [Strongylocentrotus purpuratus]
MQGDVTFISMNCRGLANDKKREDVLLYLKSKQYDVCCIQDTHFAPDIETEIRREWGGKCFFSYHTSSSRGVAILFKDTIP
VKVNRSRIDNGGNLVVLDLTLYEYDITLASLYGPNTDNPTFYTDLQRIITEFENPHVVICGDWNLVQDQTLDTHNYVHVN
NPRARQQVKNMKDELDLCDPWRIRYPVKKYYTWRQPNPFKQSRLDFFFISSELLSLVHKSDILSGYRTDHSLVRLSLTLN
KIKRGPGIWKFNNSLLKDENFVSKIIKTIKETITFYAKDEVEFDENDNIVGNCEFSINDQLFFETLIMLLRGESISYGSF
VKKQNVSREKELERNIEVLERRLVTSNDKTALLKELSDKKSQLETYRLKVNDGIIMRSRIKWMELGERSSKYFLNLEKQN
KVNKEIRQLSTENGDVISGQDGISNEIFKFYSNLYKAKDTEEVDIDTLLNYPDIPKLTPELSTLLEGPLSESEVCLTLKS
MKNNKSPGQDGFTVEFFRFFWQYLKTFMIRSLNFAYFTGELSQSQKLGIITLIPKGNKPRHLLKNWRPISLLNVIYKIAS
GCIANRLKRVLPRLIHENQKGFLKGRFIGENIRLLYDILLYTELNDIPGMLLMIDFEKAFDCISHEFLINVLDFFRFGPS
LIKWINLFYQNXSSCVTVNGFCTERFTIGRGCRQGDPLSPYLFLLVSEILGILIRHSNDLIGLHLQGKNXKLLQYADDTI
LTLNGTKEDLQSSLKILGDFEEMSNLKINITKTHVIWIGKNRACKKQLMPEHKLNWVSEGYSRYLGIDFSVNLVEMVNHN
YTEKIKDIKRQIISWSKRTLTVLGRITVVKSLLVPKLNYLLLSLPEPNSQIMKDINRSFYAFIWGNKPDKINREQMCQLY
NKGGVKMIDIYIHAKSLKISWIRRFVTDSQIESFTFHMFNSFLPQTYFFHLYMGSHYFRKLADLTPNPFWKEVLFAWSDL
VELLIDDIASQPLWNNPHIKMNDKVVCFGAWNLRGIRFVNDILKIDGSFXSYFEFQRRFDIQTNFLQYYGLCNAIRSGFK
MTTHVAPSKALEPIIPEAVHLVVKTNVGCSHIYQSLLKNKVKECKALTKWKSFLDFQDVLWGSYCQIPFQSTIDINMRWF
QIKILNRILYMKDSLLRFGVVADKKCTFCSNNDETIIHVFCFCNYSNEVWSKLEFWIFRNTGERIKLTNQNKLFGFCGSN
NNALNCVLMVVRQEIFSAKLRNQLPSFDIILSAVKRYYEMEKYIYQTNLRENKLKKKWFHFRKYFESVGNVLT
>Crack-2_CQ_gag#LINE/L2 76-837  [Culex quinquefasciatus]
MDSNLIAELPKILDAVKEESKSVKEIVASQQFLSNQFDKMVQMMGSLSDEIKHLRAENGLLKLSLNRLADNAKSISNVVE
QAEKDIDSHHRAQLSINAIVLGIPRTPQEDTKSIVLEICDILGYKDGEKNIVSCCRVANSKAACPPIRISFKHVRAKESL
LDHKSSFGKLDVATLQGVRGPKGTTGKVVIRDDLSPLSMRIFQELKQLQNSLELRYIWPGRHGAIMVRRTDRSKAIPIQS
RQDIQKLALSCRKH
>Crack-1_NV_gag#LINE/L2 123-908 [Nematostella vectensis]
MDETLLERVNSLEKSMDFFNNQFELIKKKVTTLERENEALRVENNVLNSRISTITDKLRDQEAILDEQEQYMRRECLEFK
GIPSLEDENTNDLVIQVAQLAGVELDEDDISISHRLPAANNREWSDYEGNVHPPSPPTIIAKFVRRDIKDEIYKARFSLK
DKTTQDLEDFNCTDHRNHIYIAESLTQARKKLFKACLKAKKDLKFAYAGTANGKVYLKKDKKSRAVYINSPTDIAKLRRS
HAIQPPIADVSRSSRPIDQASS
>Crack-2_SP_pol#LINE/L2 1-2238 Fragment [Strongylocentrotus purpuratus]
GLLYYDISDHLPIFIISKVHLVKKITKNNCAMHRKQTKHNIESLNFDLAKEDWVEVLCVSDVNVAYEKFLEIVLHYYHKN
IPLVKIKKGKKAKQPWITKGILRSIVARNKLYKEALTSQCNDKLKKYKTYRNHLTSLIRLSKKLYYSNNIESNKSNNNLL
WKTVKELLGKKKTESNKCFLIDEQQITDPIKISKAFNEYYIDVGPNLAANIDSGDMDYNKSLNFPRENSLFLTPTNDYEI
INVVQHLNSTKSSGHDSISVHLLKQIIFNMVTPLTYIFNLSISTGVFPHLLKIAKVIPIYKKDDSSVISNYRPISLLPSI
SKILEKIIYKRLNTFLQKNNSLIPNQFGFRIGHSTDYAILHMYDKIIEAFANSEHIVGVFMDLSKAFDTIDHKILIHKLQ
YYGVRGQALSWFTNYLQDRQQYVSFQNHESTKLTIKCGVPQGSILGPLLFIIYINDIIETSSLLNFIIFADDTSISYSHK
NFDTLITRLNCELMKISRWFKSNKLSLNLSKTNFIHFKQTNVHDIRNCNIEIDGLPLIEKQSVKFLGVTIDSHLNFNEHI
RNIHTSISRNIGILYKLKKILSERSMIILYNSLILSHVIYCNIVWGNCSLTRINSLFLLQKRAIRMITNSHYISHTEPLF
QRLKTLKIQDIHIFQTCIFMYKYSHNQLPSLFHNIYSLNSNIHTYPTRCSTNYHLENPKILLAQKSVRHHGPDVWNSLPN
SIRHCSSLYSFKASLKKTLISKYLHN
>Crack-7_CQ_pol#LINE/L2 959-3829  [Culex quinquefasciatus]
MSSQNNPNLQLPFQPSTKTINTIKQLKFNSENSLKLFYFNARSLNDKLTELEFLLDEANCRMDALMITETWSRPETEQSM
CLSNYQCFFASRSTRRGGGSAIFIHNDIHCKPIHNYCDEHNSFIAVEVGDREKTVLVCVYRPPEPLSSSLDCFFQHLDTF
LAAQACRTTIVTGDFNLDLLTTTTAVQRYTNIVLSNGFIFCGHRPTRFEACLDHILTNNTELQVTVQQLQYNLFDHDAMF
IEATRTIDCISSGRVSFTKTDVNKLRLYLQQHPPNTSMQFSVEENYNVLLSQLRSGIEASSTQVRSRGTKQTHSKPWFDN
ELKQCIRTKNYWYGKHRQNIADHVTRDTYHRWANTVTSLKRTKRKHYYGAKFERQQSSITGTWDVVREVLGSRRKSGKGI
SSRFSSTDEKQRCVEDANTYFAAAGKHLAENIPYTAMQPINPQTDQLLVLEPVPRTIVLQTIASLPASKSTGYDGCQPNF
FKACGEILADSVADVVNTSIRQSLVPNTLKLSKVVPIPKTPAARNVSEFRPINIPSVTDKVLQKIVNKQLTEHLERNHLL
SPRQYGFRPKSNTQSALFDAVVEIQRNCDRKLKVAAVFLDLSKAFDTCEKRILLRSLSELGVNGQSLRWFESFLGERQQY
VCDNGLNSEPLFVDYGVVQGSIVGPTLFNCYVNNLKDLPLHGTLFMYADDIVLVYAASTYEELQSRMNEDLCHLCRWMNQ
HKLTVNIPKTKYMLFNAPSWTRLDVVYNGECIDYVDAFKYLGVWLDSGLKWTVHIEKLNKTLAQVAGVFKRVSSVLPTQT
KRMLYFSLFYSHLIYGIAVWGTAGSTALNLLQTTQNKAIKNLFGYHYRTSTALIHSNNRFLSVSSTYTAVACCHVHKIQR
NCIHTNTVLSRGEDRHQHYTRRRGDFTASRINTTTFGQNSALHRATLMYNALQDDMKTLHPARFKKVLQNQLLEEQF
>Crack-7_CQ_gag#LINE/L2 7-972  [Culex quinquefasciatus]
MATETAKVCVKCKKNINARHGKPLQCDGKCRQVWHKACTSVSDEZYPVPDKFWFCAPCKETRNRNRRSTINMADRTPSTP
STAKAGAASSTTEAAIVRIESKLDQLIGWQKDVITEIRGIQNTLEELRTTTETLMDEQQQLRSDNFELRRQLELNEIEID
QLRQEKLXKTLEISNVPVAEDEDLFDKVTQICHGIGVVLDISEVKEIFRAPTYQSQKSQIPPPIQLKLSSKKKRDELLAK
KREKKELTTAILDKGTDKPVNIYISEVLTKRNRYLFKLARDLRRSDRIKFAWFRDGRLLVRKTEKAKVKGIRSVAALDEF
TK
>CR1-79_HM_gag#LINE/L2 47-767 via tfasty with CR1-52_HM_gag, 1 frameshift.   [Hydra magnipapillata]
MEVTMKNIERLITQKKYILKETDKLLKNQEATFTNIISSNLKIITDRLDKLESEINTNKSKTSTLEKNFRDIKETFNFQE
ENFTNKLAQMSQKCNDEISILKKKTIDLENRSRRNNLRIDGVSESNSETWNDCVSIVKNIFKNQLGIAEDIVVERAHRVG
QVKEDKPRTIILKLLNFHEKSKILSLAKKLKGSGVFINEDYANETLEKRKKLWEEIKRHRKEGKFAIIKYDKIFVREFRK
>CR1-74_HM_pol#LINE/L2 826-3988 via tfasty with CR1-5_HM_pol, 1 frameshift.  [Hydra magnipapillata]
YFLLINGILFLLLLILNLTVFKMEENFVIKFSDENDILGDYDTDSNFLNHKMLESKYYSVSECSQHLKKNKSTFSILNIN
VRSLNKNIENLKILLNELKHDFKIICLTETWCKSGETNYEFDLVNYASIHQPREFNAGGGVSIFIHDSLNYILRNDLCVN
ETDCESLCIEIVNKTEKNIIINNIYRPPSGNMKKFKTHLKTFLNKIKNSRKHIYLVGDFNINLINYASNNNAKNFINTLL
ENNFIPTINKSTRVTKKSSTLLDNIITNSFYNSPLFTGIIQTDLSDHFPTFLATNNILINNIATKSTIFRRQINENSLKH
FKCCLKNNVDWNLILQSSDANNAYNLFLGQFCKQYEIAFPEKEIIINTKSLQNPWMSIGLLKSSKKKEKLYIKYLKKKIx
KNKNFYKYIKYLKKKSYKNEITYKNYKNIFEKIKRYSKKLYYAQLLKKHNGNTKKVWNVIKDLIGKNNYKKNTLPKNLLI
NGKLVYDKSIIAEELNNYFVNIGPKLAAKIPSNSTPFDSYLKTYDKLMDETSLKLSELSAAFSSLKSKKSEGFDKISIDI
VKSVFDIIEPSLFHVFDLSFKTGIVPDKLKVARITPIFKSGDKSNILNYRPISILPCFSKLLERIMYNRLYNYLTENDML
YCKQFGFKKKNSTEHAIVELSNQISNAFNNDCFTLGVFIDLSKAFDTVNHNILIKKLENYGVKNKNLLWFKGYLTNRRQF
LYYDQNNTIPYSITCGVPQGSILGPLLFLLYINDLYLATNLLDLILFADDSNLFYSHRDIKTLFKIVNEQLCKVNEWFVS
NKLSLNVDKTKYILFHKVNKSENIPIKLPNLIINNTYIKRETNVNFLGVKLDENLLWYSHINSIETTLSKNIAMIYKAKP
FLNVASLKKLYFAFIHSYLSYCNIVWASTGYTKLKKIYNKQKHACRIVFGACRNTPCEPLLRALGALNVYKLNLHQVLLF
MFKTKMGLSPIIFQTYFNKINHKYSTKFSDNNFVLLKYNLKLTFYSIKYRGPYLWKKFPEIVNKNKTTLEQFKNESKQLL
LFRDLNLSDFKCFF
>CR1-82_HM_pol#LINE/L2 857-3931 via tfasty with CR1-27_HM_pol, 3 frameshifts and 1 stopcodon.   [Hydra magnipapillata]
MVNETIDLETLRFNIFEIANKHLPRNRYDEFSFLNEKYSDSVYFDIKNFKVELKTTINNFTAIHINIRSLPINIDKLKNF
LLECKHTFSMICLTETWCSDETAEKNSDLQIPNYKIFSKERSVNKRGGGIVIYIQNDLNTKLRNDLSNSDGNIEVLTMEV
TNASKNFLVSTCYRPPDGDTCKFSNYMKYLITKNREQKKLFIIGDININILKYNEHAVTKNFFDDMFQLNIFPIINKPTR
VTSKSITAIDNILTNSIQDTSLKSGIIKTDISDHFPIYFSLSLDSRKIDNSKILFYKRIIDETSTQKFKDLLSATNWQKV
YRECNSGNTNSAYIKFINLFMLEYNKSFPIQEKEIKAKYLNCPWITKEIRKSSKQKQKLYIKYLKNRSEANLFLYKQYKN
LFEKIKKKTxKLYYSNQMQKFNGDLKKTWDIMKEIIGKGITNSNKMPSRVIINQKESNNKRDISNEFNSYFANIGVDLAS
KIQCPNNSFKNYLTGTHCSLNFNELNQDELEIAKKSLKIKSPGIDDISCKVVIDVFEEIRNPIYQIFNSSVTTGIVPDLL
KISKIIPIYKSGEANSLNNYRPISILSVFAKLLERIIYNKLNEYLKTNKIINKGQYGFQKRHATEHAILDLSNRISKSFK
QKKFTLGIFIDLSKAFDTVNHEILLTKMENYGVKNKALTWFKNYLNDRHQCVIIDKKRHSNLLKTKCGVPQGSILAPLLF
LIYINDLPNASNIFKTIMFADDTNLFYSSKTIEDLFKKTNNELKKINIWFKSNKLSLNIDKTKYILFHSTQQIKKLPLNL
PTINIENITIERAQNTKFLGVLIDEHISWKPHINYINTKISKNIGLLYKARSFLTQKSLILVYFSFIHSYLMYANIAWGS
THITKLKPLYLRQKHASRLVFNKNKLTHAQPLLEQMNALNIFQINIYQNILFMFKYKLSLVPEHFTAHFFENNVNKYNTR
ATGNFKIPFEKTKLSKFSIKHRGPYLFNKIISRNESLINLNNEQSLKTKLKSTIIKLNNYKEFF
>Crack-1_CP_gag#LINE/L2 408-1475 [Culex pipiens]
MSSDEMDAENEIYCAICETAEPNAAKVLECVNCHACHHFKCKKIIGNAIAKWKKKDYFCSVLCQEIHLKATSAANTESLL
LAEFQKVVSEIKNLKEEQHSTRKYVSKAVGEIEKSQNFLAHKFDEVCDNIKRLENEQHTLKGSVGVVEGKYVQLSETVNR
LEGEVDRYRRSALSCNAILLGIPEVKDENLGEAVTRFAAVLGLNITEDFFSDVKRLRDSKSESRSPPIRIVFASEPNKEQ
FFAKKKEVGQVQVSTLGGCYSGKSGRVMLRDEMTPHGLALLREVKEVQEQLDLKYVWPGRNGVILVKKTDKSKVEYIQNR
NDLQKLNKLSSKRGLEMSLSGPISSSSVIEQDPKRR
>CR1-87_HM_pol#LINE/L2 50-2116 Fragment[Hydra magnipapillata]
RYQAFNNFTATFKCIFDTVCPIITSEVKNKELKNPWMTSNLIKSSKRKQKLYIKFLKSKDKGDEKTYKAYKQFFQKNIRQ
AKIMYYSNLLNKNKLDIKKTWSIINEVTGREKKKFFSIPQKIFCDNKYITNESDIYHEFNKHFVNLGPSLASKIVMPNKK
FDEFIGEKTLSCISNEKISYKEFNKALTELKRNKSCGYDDITSNVAIYVIECIRKPLFYLISSSFENSTFPDKLKLAKIH
PVFKNGDCSSVCNYRPISLLPVFSKIFERVIFNRIYNYMTLNTLLYKNQFGFQKYCSTEHAIIELTNKIFMFFDKGEHVL
GVFIDLSKAFDTVDHGILLSKLKHYGIKGLIYKWVKSYLFNRKQFVVLEESGALDIVCGVPQGSILGPLLFLIYINDMNK
ASHKISSIMYADDTNLFYNNSDVKILFETMNTELESFNQWFIANKLSLNCEKTSYTLFHKIRQSTNLPLKLPKLSINKNE
INRVNHSKFLGVIFDENLSWKKHISLIEAKISSAISVLYKSRAFLDYKSRKMLYFSLVHCHLSYANIVWANTHKTKLLRL
QSLQNHACKAINYLKRLENPSPVMKYMNVLNISKLNSLQILIFMYKYKNNLLPKVFSDIFTSAFSQKYNLRSNNNHNYHL
SIVKSQVSKFSIISQGPSLWNQLKNNNIKNLKSTFSFKRQMKLHLLNF
>Crack-8_HMa_pol#LINE/L2 882-3977  [Hydra magnipapillata]
MVSNMTENENYFENSSFNVFRLNNLNTLDEHDPDKIIFDDYSLMNTEAQYLFPDEIKQYLSDIEPFENLSLLHLNIRSAK
ANFENFKIFLEESNFIFNIICLSETWLTDDAYSESCRFDLLEYDAIHLQRKSKKRGGGVVIYVKNSLRFKMRNDMCISEC
NGEFVSIEIVNDKTKNILVTCCYKPPNASTENFSNHLQNIIQKVSLEKKKLFVLGDFNINALNYDNDIESQNFYNDLFRY
GVIPLINRPTRITRNSATLIDNILTNFLFENSLKKGIVKAPISDHMPIFISANTSNKQKQKQNKVTFTKRLLSLNNQLAF
QNELGNIDWSPLESFNDANSMFNSFHHNFLNLYEKHFPEKEVTIKIKNLNSPWFSKGLKKASKRKHRLYDKYLKNKCIKT
KAEYKNYRTLFEKIKRTAKSNYYKKQLEKCQLNSRKTWQVLNEIIGKPKINKSFFPKILHIKNKTIANENNIANEFNNFF
VNIGPKLAAKIPNVNKSFKEYLHYNKNQFKNENLTFKEYETAFKSLKRNKSSGIDGINSNIVIDCYNELKVPLFKICKRS
LNEGIFPDILKSAKVKPIYKSGDKTDIGNYRPISILSIFSKIFERIMFNRLYAFFKDNDLFYSKQFGFQKSTSTEHAILH
LINEIKNSFANGEFTLGVFIDLSKAFDTVDHKIMIKKLKMYGIRGVSCRWIADYLSKRTQSIYYGNKKLTNSSLISCGVP
QGSILGPLLFLIYVNDLWRASNISTIMFADDSNFFISGKDIPQLFVQMNNELDKISLWFNANKLSINSNKTKFSLFHPLK
KKKIPISFPKLVIENTEVSRERVTKFLGVLIDENITWNKHIAYIGSKISKSIGVLYQSRDLLNKHHLKQIYFSFIQSYLN
YANIAWCSTSKSKLETLYRKQKHALRIMNFKNKNEHAKPLFEIMNIFTLYEINVYKILCLMYKSKFQQCPSIFNDLYEIK
PNIKYTLRTTGLIEPLCKTKQEQFKITYRAPHIWNKILAKYSNLPGVNNINCFQKLIKKNISKYTNLINDFF
>L2-2_NVi_pol#LINE/L2 1047-3104  [Nasonia vitripennis]
FRQALCHRCLARHLDLLSCCDWTAMNSIETDLEGALCXLNNNIKLAIDELAPLKTVCPRRKYAPWSGPELLFDEVLRLTN
EVDMRSAQERESFLRQLSDALDENRNIWKVMRHLGLLPGRKEEEFFGFTPGELNEHFAGVSVSPLENIDNATDTILLASE
EGFTFSPVSMSDVVLAISHFSSQARGVDGIPCGVXVKALPIIGEFILNLFNCSFAQGIFPSIWKQAQLIALRKTSAPSNV
KDFRPIALLCFLSKVLEKIAHAQITEYLNKNHILDPFQAGFRKHHSTQTALLKLTDDVRMAIDKKKVTLMLLFDFSKAFD
TISPSKLLSKLRQLGFSRAALLWIKSYLQGRSQMVISNKNGTSEWLETNLGVPQGSVLGPLLFSLYVNDLQNILDGNTIK
HLFYADDLQIYLHTNKDNFLDGVARLAEAARLVSGWAESSGLRLNSGKTKSIFFGSMKNVNDIKSWNLPGVPLPDGVIVP
FSETVVSLGVVLDSKLTWKPQVDAITKKVNKALYSLRFIRGCTTETLRRRLVETLIQPHIDYCTVTILDASNEQRIRLQR
LSNSCVRFIFGVRRDEHISPYRRRLEWLRTDSRRLYFEAILLYKXIRIGEPSYLASFFNKHKPRPSSRGVPPELSIPTVS
TETGARAFQVQGARFWNSLPSTLRNLPSLASFKGALRRHLLATES
>L2-1_DPu#LINE/L2 214-3243 [Daphnia pulex]
MPWAECRLLFLSLRDSLLPPLSPSATATILRLRLDKGSSLTPSNYRGCRSGVCVKRLRASKKFLPIGLLNARSVASKPDV
IHHHLLTFDLDVLAITETWLTPEHGDEILANTIPEGYVGIHVPRVGRRGGGIAVIHRSTICVNRLPIVFESPFFEHLAIS
LTVNTVFVKIAIIYRPPSVSCPKFLSDFSDYLEILSVGAGKLLILGDFNIHVDDNACSIGRKFLATLDSFGLCQHVSTPT
HVSGRLLDLVLSRLADNFVMHCYTSDLISDHFAVHTLVKVHRLVRPQKTVVFRRLKSIDREAFVSDLLASSIFIDPENDT
ASLLAQYNTDVRAVLDKHAPLITKRLTVRPDNPWDCEEIRTCRRSLRRWERKYRARGLTIDRECLTNAREALKKLIFEKK
SSFITQKITESAGKRSLFKLVDSFLLKKPALRLPDHDSLSSLVERFSVYFDTKISTIRSVLDSTDSFPSLDESVNLKCDF
SLFRPITICETVALIMSCPAKSSPLDPLPTSLLKEFVDVLAIPITTIINLSLSSGVFPKGMKIAFITPLLKKPSLCPDDL
SNYRPVSNLSFLSKLVERVAVKQLTAHLNFFDLFAPVQSAYRRHHSPETALLRVVNDMRMAVDAGDAALLSLLDQSAAFD
TIDHSTLLNRLSVRYGVTGVALSWFSSYLSDRCQSVSLRGVSSTPKPLRYGVPQGSVLGPILYILYTAPVCDIANQHDVP
VHFYADDTQHMVRFVLNSDGSPQKVAFAALSRCIAETKERMTTNKLKLNEAKTDCLLVFSDSSRVKPISMPLMVGSSPVL
PSTLVHYLGAGLDSQLSMEAQILATRKKALFHLSRISRMKRFLSKPALAQLLHAFVLSTLDCNNSLLVGCPESKLCVLQK
VQNWAARLATGCNRRDHITPCLKSLHWLPVRQRIDFKISLLMFNCLNGTAPSYLTSLVARYEPPSSLRRLSSRPELVVPR
IKXKKYGSTSFSYAGPAIWNXLPFSVRSSTTLAQFRSSLKTHLCRVAFEN
>L2-5_XT_pol#LINE/L2 1-2859 [Xenopus (Silurana) tropicalis]
RLGAVNTDLKSQESQIKAVLCNARSIINKTAVIHDLIETSDLAFITETWLSQNFGPTLEATVPKDFSVLHYQREDRIGGG
VALCFKHSLRIKPLAVGPTYSFECLAAQLSAEKSINILLIYRPPGNGSDFLKEIADLLSCLVLEPRWIILGDFNAWVDTH
SSQLGRELLLTMNELGFSQAVHLPTHKRGHTLDLIHSGLSISNVEINPVVWSDHHTIHFSLAEPALNRQAKDLTKYRSLK
GLTPQHLQNNLNLDGLTEHSLDLDSLVHKYNCCISSAFDSIAPLRIKRSSPSHHAKWFDNSLKELKKEGRRLERQWRKHQ
RSKDKHSLICHQKNYQATITKKKSSFLSQEIAKAANKPAQLFRTVDRLCNPSCLKPNITSSKDLCEKFALFFTDKVSSIR
SAIKSTTPKTYAEPQNGCHNNLPSWSDFQVITEEVISHILLNLRQTTCDLDPGPTQFMLKCPNLFRPAFHKIVNCSLQAG
KFPTCLKEAIIRPLLKKPSLDPDNLSNYRPVSNLPFLGKVIEKAAYLQLEARLSMNNIFDPLQSGFKKHHSCETALVQIC
NDLLMARDRGECSILILLDLSAAFDTVDHEILLNRLQEYCGIDGLVLQWFSSFLAGRTQRVALGPFQSNPVPLKYGVPQG
SILSPLLFTIYMLPLGKIIQKHGLTYHCYADDTQLYMSFKPDTTDPIPKINTCLAELQEWMNENWLKLNADKTEVLVIGG
QRLTAKQLQTQSMPLRLGTSDLASSNTVRSLGLLIDGELNFRSQISAVVKHSFFHLRNIAKIKHLIPSEVLPTLVHAFIS
SRLDYCNALYAGLPNKDLHRLQLVQNAAARLLTSQPRHCHITPILRSLHWLPIKWRILFKIGMLTFKSLHGLGPGYLKDL
LQLRHTSHNLRSNGSNNLTTPRVQLKTFGSRAFCHAAPTLWNALPNGIKTAPTLDTFKSKLKSHLFSLAFMST
>Kolobok-19_HMa_tp#DNA/Kolobok-Hydra 376-2181 [Hydra magnipapillata]
MGRRKSGYKPLKRVFHGNRFVVAPLETIKNPISTSEIIINEAPCSASGLKLKNNNVKEADLNISYLLIDFNILAETICLY
SVCPECNQMGLCTQNLTTEKKGWANKLRLSCTYCQWSKNIFTSKEIILPNKSGQKCFDINTRCVMAFREIGKGHASIQTF
SRILSLTDPINLKAYNEINNKMLNSYMTAANESMTNAVRECKANVDEVVECTVSLDGTWQKRGHESLNGVVTAISRTNNK
VIDYEVLSKKCQACLSWRNKKGTNEYQIWNSSHNCSINHKGSAGSMETQGAIAIFHRSIHQNGLRYKNYVGDGDSSSFLK
VVESKPYGEDFVINKLECVGHIQKRLGNRLRSLRQSMKGQVLVDGKKLVGKGRLTESAINLLQNYFGMSIRQNSEVYSMK
KAIIAVLLHCSESDTKAQRHLYCPRTNDSWCKWYKLNEVERLNYEPKLSLPAAIRDILKPIFMELSADSLLIKCLHGMTQ
NVNESLNAMIWSRCPKSQYCSQKIIKIGVCSAIIHFNDGFNGLHNVFKFLNITPGASFCINGPKRDLCRIKKANKKSSSF
CKKQRKVLRAKRKGFIDEQTNTNDCESYMTGAAYFSSPFPE
>L2-6_XT#LINE/L2 1-1860 [Xenopus (Silurana) tropicalis]
DPDFIHFKFMLSCYNQALSIAKQLYFSSLISTLSSKPQRLFATFNSLLCPPPHPPPVTVTAQDLAHFFKDKIDLIRQSIP
FDDNLKLPCYSLTSALHSFSPATLDEVSKLLACSNPTTCSLDPIPSHLLHPISDTLSPALTHLFNLSLSTGTFPLSYKQA
LITPILKKPSLDPSSPANYRPVSLLPFASKLLERLVYNRLVQHLTHNSILDPLQSGFRPTHSTETALTKVTNDLLLAKSK
GHYSILILLDLSAAFDTVDHPLLLDILYSVGVRDTALSWFKSYLSDHSFKVAFSNSTSTSLPLSVGVPQGSVLGPLLFSI
YTTSLGKLIQSFGLQYHLYADDTQLYLSTPDLSPSVLSQVTDCLSAISSWMSQRHLKLNLSKTEFIIFPPTSSPVPQVSL
TVNNITFQSSTQARCLGIILDSQLSFTPHIQSLAKSCHFHLRNIARIRPYLSLDTTKTLIQSLIISRLDYCNLLLTGIPT
HRLSQLQSVLNAAARLIHLSHRSTSVAPLCISLHWLPISSRIKFKLLTLTYKALTNEAPPYISALIPKYTPSRNLRSASD
LRLSSPLITSSHSRLQDFSRASACLWNSLPRPIRLSPSFQTFKRSLKTHLFREAYSMYLN
>Crack-27_BF_pol#LINE/L2 2-2740  [Branchiostoma floridae]
NSVVEVSGYNLYRRDRDRRGGGAGVYVKRTIPSQRRSDLEHTDLEVCCVEIKPEKARKTLLACIYRPPISGRKWKDAADS
FVHDLSTTAENENADVMIMGDFNVDLMKSTTESSSLEFLMGLYQLVPLIRQPTRITEHSATCIDNIFVSNPDRHKQSQSV
TWGASDHHLILTCAKAGVETGGARTCEYRNYKRYCQQAFIDSLKTVRWETVLDCVNASDAWNAFKDIFLHVAEVHAPIKE
KQVKEKGWSAPWLTDSVKNLMGQRDAARRKAIKTGEATDWECYRSLRNQTTSAVRMAKKSHFASAISEAEGNHSLMWKII
NTFTGKTKSKCQVQKVQRPDDSCTSEPTEMAEEFNKYFSSCASNLASDIPVSSDDPVRHVPESTSTFCLQPVEETTVLNE
LLKLKTKKATGLDKIPSKLLKDSAPVIVKPLTHIFNLSMSTGQVPNDWKLARVSPIYKAGNRDNVSNYRPVSVLNVSSKV
MERIVHNQVAHFMDRNGLLTAHQSGFRKHHSTGTAVQKVVEDIKSAFNAHEVTVALFLDLRKAFDTVNHEILLRKLQKMG
FDIGTVNWFRSYLTDRLQCVDVQNKQSTLTQVTCGVPQGSVLGPLLFCLYVNDLPQVVEKCNIHMYADDTILYYSASLLS
ECEEAVSADMERAANWFKENRLSLHPDKTKSMVFGLSQKLRHTGKTVSVTDGVNTFEQVNTFTYLGVTMDSTLQWSDHIE
KTTKKLLSGLGALCRAKPFVTKEILQVMCRTLLYSHVDYCSTAWMPSLLNSNKSKMMQLSRLLNRAARIITGSRRKDCIP
TETLLAEAGMESLSERAKGNILVNVYKAVHNKAPSYLQNMFKWMSPPVLHRRTRYATKQLSEWDPHMLNVPKAHVQSFRG
CLQFQGPTLWNELSAVQRQQTTQATFKNGLMQ
>Crack-22_BF_pol#LINE/L2 3-2369  [Branchiostoma floridae]
TSEHREIHVMGDFNVDWIKTSDVSKKLHGMTQSYGVQQLVDKPTRTVNRGLSVVASCIDLLFTNQPDKCSKITIRTVGFS
DHDAVMFTRKAKIPTTGPRTVHKRTYKNFTEDAFLYEMKEAPWHLVYNFDDVDQATEMFADILQDTCDRHAPIRKFTVRS
NAAPWLTPDIKELMQMRNEAKRDAKATGLASDWAVYRKLRNRVVSVCRRAKVQFYRDTFEECSGNPKKTWNTINSLLGRK
HTVSPACVQEGGKLLSKPRDIAEHFAKFYDTKVANLRSGMSNTAGDETYANLGQEAFVLKSVTVRDVHKILSRLPDGKTP
GCDGIDNKLLRISSDIIAEPLTYIINLSFATGTFPAKWKHAKVIPLLKDSSKPLSGQNSRPVSLLPTCGKVCEIVASEQI
VSYFSRSGHQSEAQHAYRKLHSTETVLLKMTDEWLDSMDKGLMTSVVLLDYSAAFDLVDHVHLQKKLEMYGFSEEALSWI
MSYLSNRKWQVYANGAYSQSRVLQCGVPQGSCLGPQLYSIYVNDMSSTVENGELDQYADDSTVHAAGRTVQDIRTKTLVD
LECVAKWSDHNMLKLNNGKTKTMLVGTSKKTRVAPPLQLELRGQSLQQVPTVKLLGVHVDQNLTFDNHVDHVVKNCNRSM
AQVNRVRKLLPRRLRIKLIQALVLTHLDYCSSVWASTSKKNINRLQVVQNRAARIALGCHRYTSRDALLQTLGWLSVKDR
IQQKSVVTFRKIMQNKQPVSLYKQVKMQSHGYQTRSSKSQTIRLPKPRTNAQKKRFLYRMSSTWNGLQ
>Crack-29_BF_pol#LINE/L2 2-1972 Fragment Crack-26_BF_pol is 92% identical and even shorter. [Branchiostoma floridae]
TPAPWLTNDLRDLIALRDSMYKKAKRSGSPTDMTDYKAMKNRVNYLCRQAKRDHAAQSVIQGSEGGQAGVWKAIRTLLPN
KTHNTVTYLEHEGLSISDSKGMAETFNDFFHKVIQDLCDVLSRTVSPFSPTQFLNETNSSFSFTPITVEAVTEHLTKLNV
KKATGLDSIDNRLLKTGAQVLAPSLTNLLNKSLTSGEFPEKWKTAKVMPIHKKGDRTMLSNYRPVSILSSISKILERVVH
NQLYGYLNQNRLLSQCQSGFRKLHSCETALHSVTEDWIDSIDKKQQTGVIFCDLSRAFDTLNHDILLDKLKAYGVDEMAC
SWFKSYLTGRLQRTCVNSILSNTSCVTCGVPQGSILGPLLFIVYINDLPNCVQSCRVAMYADDTIVYFSHRSIQTIQETL
QNDCTRLMHWFVANKLSLNPLKCKSMLVGSHKSKATDQQLQLILDDTELEQVGTFKYLGVVIDKALLWNDHFLHVNKKLS
QIIGIMKCLRPYLNRQALLTIYTSLFLPHIQYCSTVWDQGGKGAIDKLQKLQYRAGRVILGCDHYTSRETVLNLLGWTPV
AQHHRRAKAVFMFKALNGMFPPHISHLFTTSADTHSHHTRHSTQGGLQLPRTRLQYKKKSLSFSGAALWNSLPAHLRTAS
SISTFKTIYTTEYHMI
>Kiri-6_DK_pol#LINE/L2 1360-4188  [Drosophila kikkawai]
MSFVTLSLRLINGMSQIMWDNVGGSMTGSILRVLXNYKQGLKVVHINAQSLLRKIDEFRYLFVKSNVDVICVSETWFMSE
QSDLLVNCDGYNVFRSDRIGNAGGVAIYVSSSLNCEVKCKQPNDSPIEYIFLEVNSMSKETKSLIGCIYRPNRTIEYAPL
IDTIREISTAYTDIILAGDFNSNVLNENHLIDSFEALGLYAVNKSMPTHFTDSTDTLLDLFFVNDPSLILLYDQVAAPVF
SKHDLIFLTYDVSLTHNVNSFSFRDYKGINALVIQSEYSMCNWSPIYQCTSVESQLNVLNINILNMYNKCVPVKIKVIKP
RQNLWFNNEIKELIHQRDIAYRKWKRYKTDHFCTLYKKLRCRVTKLIKVAKGEIFKPKFENATSSKKTWNELKKLGIGKC
RQTNNNYIDVENLCQSFSQIDVPEATHNQYLNNISSCDNSFSFMCVDQCDVLNGILKVKSNAEGLDNVSPKFLKLITPLL
LPHITYIFNTAITTSTMPTTWKKAKIIPVQKPNKEYRPISILPFLAKVLENLMAQQMLRYLEDNSLLAQKQSGFRKKRSC
ISAITDIVEDIRKQLDNNCVTFLTLLDHSKAFDSVNHSILCSKLKNLFNFSDTAARFIESYLSGRSQAVVSGTRMSSCRL
LTRGVPQGSVLGPLLFSLYVNDLPSVLSDCEVHMYADDVQIYVSSPVNQLNICISKSNNMLKKLNDWATCNGLSINPKKS
KCLVISKRPLDTGNLQNLVINNSPINYTTNANNLGMTFNNTLSWSKHITKASGRTYGLLRQLACTKTLLPQQIKTLVAKT
ILIPTLFYGIEVFGHCDSRDFHNLSVALNSITRYVFNLRRLDHVSNLTTKLLDLDLTAWISYRTLTYFHRIITSKEPKYL
YDKLVFANSLRTNNLICPRYKTLCSNRQFFINAIRQWNNLPHSFKTIRSATQFNKLIKEYLKQ
>Daphne-1_TCa_pol#LINE/L2 958-3741 [Tribolium castaneum]
ITPDSLQQCKGSLKILHLNIQCLSNKLNEILLFLENHRDYDVLGFSEHWLSEYEIQSINLLNFKLATCFCRRILRHGGTV
LFVRDGIKFKHLDLSCFSIECDAEFSGIYLNEVKTVVICLYRSGLGNVDIFLEQLGLLLDHIQNKTTDIVLMGDFNIDFK
MHKSNNKLKELLTLIMSHGLKVTIDTMTRISSSSESCIDNILTNINDGLYESEVFNPCLSDHYAQHITLFNKNTLKPRST
TVTIRNKSNRNMRLFIEALETVNLNFQLKDVEESTNFIINTYSYLIEKFFPYKEIECKDSYVPLKWFSDELRNLRNNVSI
LKTVSLVSKDPIDIKAYKSLHSQYKKNIATTKKNAYNQFLKNSVNKSRDVWKLINFERNCNPHRINNEISSDEFNNFFCS
IAEKIVNSIQPNSFPNTSQSFNRTINTQSFFLEPVSQKEVSNVINKLNNSKCCDIYDLDSSILKSSEFIVTPFLTELINK
CFVSGVFPNKLKCSKIIPIFKKGNKMNVENYRPIAIIPILGKIIEILVKERLIRFFEKYNLLSNSQFGFRKGRCTITALR
DMVEHVVECLDGGHAIGAVLCDLSRAFDCVSHSILLQKLEHYGIRGTPLKFFESYLQNRKQMVLSNNKYSNIGKIEHGVP
QGSVLGPLLFIIYINDLSAHLSPIKNILYADDATLLFASKNRNEINLQFEDGLRKAEQWFNNNCLKLNKDKTQKIIFSFN
NNHIRGVQVKLLGLIVDDGLKWNYHIDYLCRKISSQLFVLRQLKKVLNFNNLVTTYFSLIHSVLSYGILLWGNSCHSIRV
FKLQKKAVRILAGITQRESCRPWFHKFQIMSLPSMFIYSTLIETHHSNNFQTHGELHGYNTRGAHLLVTTKHNHVTTDKN
CLNLNIFNKLKRETKLLQHKQFKQTVKNYLKDNVFYSITEFLTSNITI
>CR1-7_HM_gag#LINE/L2 2-409 Fragment.  [Hydra magnipapillata]
NVIIYGLEATQCSSQTEKLENDKSQVNNLLSAIECDRAKVRSIRRLKSKGTIDPLLIELEDVNNKNMVLKASIKLRKIKK
YENVYINRDLTASQRFILKNKLIERNEKNALRSEQEKIKFHYGMTILLEFFTNSH
>Kolobok-1_NaeGru_tp#DNA/Kolobok-T2 416-2311 [Naegleria gruberi]
MQRKFCFVCGVLTGVFAAKFYTVKNGFVGKIPIHHACHDGIICGKHYNIFRRQFNNLDENFTNIEFGTNETVQHNHSNKT
QSYQFHIHNESNILPLDPQSFKSLENQNIGLTIIPTDHLIRIVKPVQCKICESTNIHLREITKNGFEQIFRFTCLACNTV
FVFRTCPRNLKLNRHIIQSFELSNSTYESFKTFTTLVGLPIINKKSYYQATNKLWSSSSQVLNQEMDKELEKIANQKMKQ
VLGPLISAFELGREVPALIYSFIHDAIFLDISVDARYSSRRNVYECTLVVFETKAKKTIERSHVIKKRASNRKSALQWFM
GASKLMEPEACRLAITSLKHKSFPVMGYGILHFKIGSFVHDKDSTVAAVIKKLEPTALEKLDPNHVIKNLSKEVEEKAPR
IASIIVSSFRKALKLANTTTNSNEKLQALLKAYPQHLQNNHSLCDSGCPHTIKPEKLITKEEAQVVKEIFDKRIKYSHKF
CDIACNSQNNESIHSTICHTTPKTLDFSRNYCGRADLAIGERLLGKFAQLRKIQRFIGSLFVIPKEQAIKLDTQYHQDKI
RKQSKAYKERRVELRKTKLKVKESPQPKGTIGSCTCSKGSTCTKACPCRKAGKSCTSKCSCSLTKCSNNKKV
>CR1-7_NVi_pol#LINE/L2 1297-4189 via tfasty with CR1-5_NVi_pol, 3 frameshifts. [Nasonia vitripennis]
MEQHIDLIEELQKEVLQEEISYPDLKTLNKNLYKNDSYILHLNIRSFLNANFNKLEIFIKSLKIKPSIIVCTETWKMFNC
QIFALKGYKLYYNNGKINQNDGVVVYIQDGISETTEVIEIGKLKILNTRITLSNNSNVQLSSLYRCHDLSSLEFIANLKT
YVNIKKNLKNHLIIGDFNIDIMKEDNYSQELLNNMLEKGFAPGFRHTTRPKNGSGNGTCIDNIYIKTKSIDTKSFKLMIP
FTDHYPIFLKLNKPPKPKKEIVRHYYNYTKLQRIASSKNWHIIETMHDPNSATAYLINEIQDCLEKSKSLINMKISKKTP
RKEWITKAIMVSCEKKEQLYxKMRKEPNNNNIKVEYKNIIFIYSXTKRLDKLIYEAKLRHDRNFFTNNSNNTKQLWKHIK
NKLGTNSQKDTTINKIAIDKNCTIEEPIQIANYMNSFFCKIGKDLSDKIINPQGKKLELPPINNNTIFIKPTNNSEILQI
IQNMKMKNGGIDNIPSKALKVLSPLIVNALTHIFNLCIDKSIWPDALKSAEVVPIFKSGSKMEITNYRPISLISNLAKIL
EKIIYNRFQSFFDKFNLLAKNQYGFRKNIGTKDALSYITNIIYSKLDKSKPIAITFLDLAKAFDTVNHAILLDKLYNYGI
RGKAHKIITSYLCNRKQKVKIGTADSRYETVITGVPQGTILGPLLFIIYVNDLLVDRTESTISYADDTAIYTTDDTWTKV
ENKMNMYLEDISTWLLLNKLSLNISKTVYMTFGNYCDSVPKKNDIKIFIQGNELNRVEQYKYLGINFDFNLKWDKHIEYI
IKKTKYLIYILYKLSKYMQTDILKIIYYAFFHSIITYGNIAWGGAYKNNLELLQRSQNRILKIINKNKFDQNNPLNLKQI
FAYECVIYHYNELKNQHMTSNSITRNKLIKPPKCSKAVSDKNNHIRAIQVFNCLPKSNPNLKHLDISKNYNKKKVKKWIS
THIL
>CR1-16_DR_pol#LINE/L2 1007-4018 [Danio rerio]
QIYTIPVIYCNTNSLGLKQGCNQVNDIKVVVTYRDNSNRPTRNINRRKSYLVPIARNYLNDNIPFLQNEGQLKMALFNVR
SIASKTFLIHDILSEKKLNFMFLTETWLDQNGSISLIEACPPHYTFLQKVRCGKKGGGIAAIFMQSLSCKEVVLDEFLSF
ECLAIEIIESKCLVVIIYRPPKQNQGFISEFSEFLTLCVTRYDKILIVGDFNFHVDNKLDRKAAEFLDILYSFSLTQHVN
GPTHNKKHTLDLIISLGINVNINEMIDLAISDHFCLFFNCQINTILQPKEKIVRKRFINTLTSETFINEIQQAPIYFRPE
MNVHDKVDILNALLKSTLDTVAPEKIKKRRLGLKKMPWKNDHICQLKRKCRKSERLWRKTKLTIHHEILRSNIHEYNKTI
RLERQSFYSKIINENSSNPRKLFSTIDCLLNKKTANYFDQPSVIMCEDFAIFFNSKITQIRTDIIQIDQNFVDELGSYPQ
NKMERFRNISKENIIQIISQLKSSSSCLDPIPTEFFKKVSNCLIDYVLDIVNDSLMTGIFPNAFKKAVVKPLLKKTNLDS
TVLNNYRPISNVTFFSKILEKVVLLQLNQFLDEHKIWEKYQSGFRKGHSTETALLKVVNDMRLNIDKGNASVLILLDLSA
AFDTVDHCILINRLEKLVGLSGIVLNWFNTYVTERTFLVNIDEYTSQEHNILYGVPQGSILGPSLFLLYILPLGSIIQKY
GMNYHLYADDIQLYISVEPRDTTALENLSNCMSNIVQWMTANFLKLNKDKTEILIVGKKPERERIEAELCSLGLQSKKEL
KNLGVIFDCDLNFKSHINQVTKTCFYHLRNVAKIRSFLSFDDAKKLIHAFIFSRLDYCNAIYTGLPKGSTMKLQLIQNAA
ARVLMKLKKREHITPVLIELHWLPVHQRIDFKILLLVFKALHNMTPSYISDCLTKYNPNRLLRSSSAGLLEFYPVNLXRS
GGTSFSHYAPKIWNCLPLEVKESPSIHVFKKRVKTHLFKIAYD
>CR1-12_SP_gag#LINE/L2 279-1184 [Strongylocentrotus purpuratus]
MPQTRNSKNKMPGHFLPSSKPQGHIPTAKRPFTAHVGVDQAVKEKRGMAAVEETSSNLGGSNEASAGIQLKFDGLLEELR
GVGSEPGDDIAQLVVTAVSTAVKAALPTIIQAVREACLSRFKEAVNPHLLRLQFKQDEIMQEQRRDNLRLTGLKENEEES
EDALAERVCEVAREVGVDIQPTDISSCHRLGKKREGGRSRQAIVRFISRRKRDRLYDGRFRLKGKDGMRGVFINEDLTPL
RFSLLMRSKETPAVKSVSTKYGSIVCKLQDDAYKIIRSPDDLFELGVDNVQYGDFKLHFLA
>CR1-2_Lme#LINE/L2 2-2845 [Latimeria menadoensis]
EEGEMVTRAVFLNARSICNKTAMIYDLLDDGIDLAFITETWLDDCAAPILAAAIPQGFLVIHCPRLHQRGGGVAICFRST
LKCTRNLWKETSSFEYVIAICEAGVNFKILLIYRPPRWNAEFLNEFSELISWLVLESPNLIVLGDFNARMDDSSDNLASE
LSHLMQALGFTQSVNSATHEGGHVLDLVFSMGISISNFRVNPVAWSDHFLVHFDVGVAPPPQKILRSYSFRPKHLLDSNK
FREMFFSSESLFSKGEGVDFLVDSYNSVLSTNIDLLAPLCTRLECSSHRAPWFNGDLRLMKASGRRLERRWRVSGLVEDR
LKFRQWLNYYQKSIREAKSSFFASVIDSEKNKPAALFRVVNQLLNPSCLRPXDTSLSQSCNSFLSFFSNKVDLIRSDIIS
NHSXCGDDVICRDDSNPLVLWNSFPPISDAQIVQVLRGLKATTCEFDPCPSWLLKEGLKDWVPLFIRIVNASLEEGILPF
ALKRAQVCPLLKQASLDPDDLGNYRPISNLPFLGKVIEKVVAGFLREHLDKFDFYDRFQSGFRPGHSTESALVKVVSDLL
TSMDKGLVSFLVQLDLSSAFDTIDHGILLDRLEHLLGISGSVLSWFHSFLRGRSQVVRIGYSVSAPAEISCGVPQGSILS
PMLFAIYLLPLGDIARRYGVGFHCYADDVQLYLAFPANNTGAVSVLEQCLDEIWSWMARSWLRLNQKKTEVLPVGREQVC
ENLFDTLSPPSINGEALRLVKVTKSLGVFLDSSLSLERQISSVVSSGFFHLRNIRRLRPFLPHDSLATLMHAFVSSRLDY
CNALYAGLPLKLIHRLQLVQNSAAHVVKNVSRFDHITPILRELHWSLIRWRITFKVLVLVFKALNGLGPXYLRDLLTPYV
PARPLRSLYGNLLVVPRVRXKVGERSFSFYAATSWNALPTDIRSSPSLSTFKSSLKTFLFXSAFNVV
>CR1-1_DR_pol#LINE/L2 1220-4303 [Danio rerio]
LAGKNSQNSHYSHLDSCSPHLNISNAYLANPIETVSVPRIIRLRNKRTVCSRKNLVRIKPEKPVESENTNFVKLGLLNIR
SLAPKALIINEIITENNLNALCLTETWLKQNDYISLNEATPPGFLYKHEARQTGRGGGVASIFSDFLNIKQRNGLMFSSF
EVLSLNVQLPDTIQKPMLSLALITIYRPPGPYVKFLKEFSDFISDLLVKTDKMLIVGDFNIHIDDANDTLGLAFMDLIHS
LGIKQNVVGPTHRLKHTLDLILSYGIEVIDVDIIPQSDDITDHYLLLYKLCLPEISKPAPILRPSRTIVPSTKDEFINNL
PDLSLFRNAPANSNDLDVVTSSMDAIFTSTLNTVAPIKLKKAREIKTIPWYNSHTRALKTATRALERKWKKTNLEVFRIA
YKDSMSSYRRALKSARTEHLRKLIENNHNNPRFLFNTISKLANNRSSLEQTTPPQISSDDFMNFFSNKIEGFRQKIGDAK
LSAPAYTPNPVNISLNHNNNLHCFKIIEHEELVKIINSSKPATCMLDSIPTKLLKELLPAIGEPLLNIINSSLSIGHVPN
SYKLAVIKPIIKKPQLDTNNLANYRPISNLPFMSKILEKVVSTQLCSFLQTNNIFEVFQSGFRAHHSTETALVKITNDLL
LAADRGCVSLLVLLDLSAAFDTIDHNILINRLKSTGVQGQALQWFKSYLTDRYQFVNLNGQPSQICPVKYGVPQGSVLGP
LLFTIYMLPLGDIIRRHGISFHCYADDTQLYISTKPDETSELSKLTECIKDIKDWMTNNFLLLNSDKTELLLIGPKSCTQ
QISQLNLQLEGYKVSFSSTIKDLGVILDSNLTFKNHISHVTKTAFFHLRNIAKLRNMLSISDAEKLVHAFMTSRLDYCNA
LFAGCPASSINKLQLVQNAAARVLTRSRKYDHITPILSSLHWLPVKFRIEFKILLLTYKALNNLAPVYLTNLLSRYKPTR
SLRSQNSGLLVVPRIAKSSKGGRAFSFMAPTLWNSLPDNVRGSDTLSQFKTRLKTYLFSKAYTQCIT
>CR1-3_HM_pol#LINE/L2 931-4194 No obvious gag in first (low complexity) 930 bases.  [Hydra magnipapillata]
MKICHHCKFCNKKIKDNHRAIQCDCCSFWIHAKCIPVDKHAYNMLSNDSSEWFCPNCISNNMPFGVLSDLELKSTLSCKN
PSNKIKFHEPPDYLKNLFKTMNNVFNPTTKCKYLDVNELNKSINPGTEIYLHLNISSLPFHINDLSSFVGTINTPPMVIG
ITESNLYANDSNITDITIQGYNIEHCPTESKKGGALLYLNSNLNYIVRSDLQIYATKFLESIFVEVIYPLKSNTIFGCIY
RHPSLNITEFLSIHFNPLLEKLSHEAKNIVLMGDFNIDLLNYRESQVISNYFESLCSHSLFPTIILPTRVTAKTKTLIDN
IFMNSFPTDIVSGNLTISISDHMAQFVCIPNNPPIKKKVKMFKRSFKKFDSDSFIQEISDINWELLIKDDDNINESINFF
LKTFEKILDRYAPYKELTKKQIKLQSKPWITSGILKSISNKNILYKKFTRSKNVNTKNILFTKFKLYRNKISNLLRYSKK
LYYASFFNNNINNVKNTWKGIKEIINIKPSTSTKSFNLKINENVISDHTSVANIFNNYFTTIQDELLKNTVPSKCAFGNF
LKIPSINSFFIEPVTENEVANLIKDTLKNNKSLGPNSLPTFLLKLVSHIISKPLCTMMNNSFKNGIFPEAFKVAKVIPIH
KMGSYLDYSNYRPISLLSNLSKLFEKAMFQRLEHFLEKHKFIYKHQYGFRNKHSTTHSLIEITEKIRQAIDNKHFACGVF
IDIRKAFDTVEHTILLEKLKHYGIRGIPFLWFSSYLCNRTQFVSINGINSGLAKSFNGVPQGSVLGPLLFLIFINDLNVS
LKFSTAYHFADDTNLLLINKSLKKLNKNMNHDLANVVQWLRSNKLSLNSKKTEIIIFKSAKTKINKQLNFRLSGQKINPV
NSIKYLGIKIDSNLSFASHLQDLALKLSRSNGILAKIRHFVNHETLLNLYHAIFHSHLRYACQVWGQSKQLAFLRLTYLQ
NKALKLIYFQHTNSNCSILYFLSKVLKLCDLIQLSNCLFVWNQNHNNLPLTFINFFSYRENCKYILRSALNFKLSVPKYR
TVHYGYESIQHKSIQTWNNLPSQLKSLKSFSKFKTALFNHFLEKYSL
>Kolobok-2_XT_p2#DNA/Kolobok-T2 6013-4593 (2 introns) [Xenopus (silurana) tropicalis]
MSDPETVVRKSLPMPSTSKADVTDNVLMKLRNRPEVINAGWSFPFVPTQKRKREHTQETSSESSSSQDESGSETSTDADE
KEPDPSRIGNISWCECGTCASMPTEIESLCCFEEPRIHNNIPDTAFCITDHDDFNGKCLDPVNVAHYYRLINVKKRKNPK
HSVYQRGLRKAAYRSFTAWMYGYLGGNNRKPIPSCVVNKIRESFPDPNGRYTGFLYPHDYFAECMALD
>CR1-5_NVi_p3#LINE/L2 4380-5300 May not be anything. [Nasonia vitripennis]
MSEKTNTTTIDCQQLKIWLSEIGNQDQCERRCVISSKIQDLIQQRKEMNNNRQGTAENSVYLDIRTYICAKGKCNSYNIR
KHRRISTYNYNKINNTYPNIIDSLDDITNDIINTWMLKTKNNKANIKFIKFIKGTCNDLENIKNPNIEKYKPIETVFSMI
DGMAAENSNKARNREATAAPGQKITESASHRMTYGDINYLGSNKAFFYFDRGIRGKQVFTNSVSSLKLQSPYKDIVIIDE
IIFTSDCKCDSSNQHKEMFPHYRVTCAVGLTCPARLNSTEKMSYIREKNATTDRFMTARQMLVRNW
>CR1-17_DR_pol#LINE/L2 2-3364 [Danio rerio]
MAPVFAACRLNPLQLFLRLILVLFFVAQHSEALLVYDRQTLLNIRNGMVNRLISEPSGSCTYNHPASLSLPAHLCRLPCI
LFRRRRRRKRGKRGGLLISLKVRLSDAGMNCRARFSSDLIPDFYRIIPYRTSDPPIQCLVSVFPTSCEASTRICSPRCRR
RGVDLSNLCQLRRIPRENDHHQVPTRLTLVNVRSVLNKTFILNDFFTARDLDFLFLTETWAVDGDLSPFSELVPVNCTYF
NNPRRSGRGGGLASIFKKTFNCQPVRADAFSSFELQMFQINERSGPVLCALIYRPPRSTKDFIKQFGDLLSSILPRYDNI
LILGDFNVHVCCPKDNLAKDFLNLIDSFNLTQHVQGPTHNQGHTLDCVLTYGLSICNVALDDMAFTDHKAVTFEITFTHK
ISNSPIVFRRFRRFNVSSIDLFKDLYINEQHTTMLEDPPSYMDVDQLLELFNCSFSSILDFVAPEKTRTVKPRSEPWLNE
TTRASRQACRKAERKWKRDKLQVSYEIFKESLSNYQRSMKEAKRKYFSELISTHQNKXDVLFSCISSVINPGSNVVMEES
CDTCEAFLNFFTEKISSIRSGIASFDIVFPEPDVSPAALVSFTPVSLLSLTDTVGKIKLSSYPLDIFPSKFFKQAFEIIG
PSILSIINRSLVSGVVPSQLKHAVVQPLLKKPSLDKSVLSNFRPISKLPFLSKILEKTVLTQLQSXLELNSIHEVFQSGF
KAYHSTESALLRVLNDILLFRDSGHSVILMLLDLTAAFDTIDHEILISRLEXLVGIQGSALKWFRSYLSDRSFCVNVGQT
FSSSRPLTCGVPQGSILGPILFSLYILPLGSIFRKYGVAFHFYADDTQIYVPFKSRDKKGLDSLMRCLVEVKSWLSSNFL
NFNEEKTELVWFGDPNPLHLSGFGELSTYQKPVVRNLGFQFDSDLKFNKQVNTVVKSSFYHLRLVAKVKSFLSFNDLEKV
IHAFILGRLDYCNSLYVGISQNALNRLQLVQNAAARLLTGTRKFEHISPVLSSLGWLPVRSRIDFKLLIFVFKSLNNLAP
SYLSDLLHVYNPGRSLRSSDEFILSVPRSRCKRSGDRAFAVVAPKLWNGLPPHIRHAPTLPVFKKRLKHHLCSLVFEPF
>CR1-52_HM_gag#LINE/L2 60-800   [Hydra magnipapillata]
MEVMMKNIEKLISSKLDEQKKSILXETAILLKNQEKIFTDILSANLKIITDRLDKLENEFNKNKSKLVIXEKDISDLKES
INFQEETFLNKISQTNSLLNSEISNLKNKFIYLEKRSRQNNLRIDGLTELPAENWNDCANELKNIFRNKLEISEDIIIER
AYRIGKVKEDKSPRTMIIKLLDFKNKNKILTSAKKLKGTGIFINEDYSNETMEIRKKLWEEVKRLRKEGKYAIIKYDKIF
VREFRK
>CR1-45_HM_gag#LINE/L2 71-763   [Hydra magnipapillata]
MATKNFTSAQLKDILEIHENTIMKMFNDRIEKLENKLNSVIDENKELKKELGELNKAVEFVSNNYDKIVADHQTSKTSLI
NEYANSNMINKLAELEDRSRRNNLRFCGIEEVENESWEDSENKVREFLNNKLQLHGKFEIERAHRVGKKLPENNKKNRSI
VVRFLNYKDKATILRKYTTMKLWTQKVYINEDYSDHTMELRKKLLNEAKDLRAKGKYAKVIYNKLITRDL
>CR1-55_BF_pol#LINE/L2 1-558 fragment [Branchiostoma floridae]
STEMYADDTSLYKAAKSVSAIVAALQPDLIELSNWVSVNRLVMNVLKTKCMLFGTARKLALLPDKSLNLVIGSEKVEQVI
EAVLLGLHMDPSLTWNLHTKYLVTKLSGNLAYVRRYACYIPDDVCKLVLQALVLSVVQYCSPLLASMSDSNMRKLQIVQN
RACRLLLKCTSDTSVRRMHLELGWP
>CR1-56_HM_pol#LINE/L2 861-3944 CR1-57_HM_pol 90% similar and broken.  [Hydra magnipapillata]
MTNLTIDFEKLHFNVFKSANVLLNDFSDADLHFFNEKNFSSSFFEIKTFKNELKTLKSNFTVIHINIRSINNNMDKLKYF
LIECDYLFSMICITETWCSDESCRINSSLEIPKYKLLSFERKTNKRGGGIITYIRNDQITKIREDLSTSDADSEVFTIEI
TSNKSKNILVSTCYRPPEGDLLKFSNHLKQIFIKNNNEQKKIFCIGDINIDCLQYEKNANIKLFFDEMLQYYIFPIINKP
TRVTPTSISAIDNILTNSIFDTSLKAGIIKTDISDHFPVFFSLTQDIKSINSCKIKIYKRKINKFAIQQFKDSLSAEQWD
KVYQECNLGNTNSAYNYFEKIFLKNYNMHFPIKEKLIKEKYLKCPWITKGIKKSSKKKQKLYIKYLKNRSEANLNVYKQY
KNLFEKIKKNSKKNFYSNKIKNSNGNIKKTWDIIKEIIGTKHCKSNSLPAQIVIDNNEYNDYNVISEKFNSFFVNIGPNL
ASKIHCPNNSFETYLTSVNSELIFKELKIDELENAINSIKINKSPGVDDISSNIVANVSSQIRKPIFEIFKSSIKTGTVP
DKLKVAKIIPIFKTGETFQINNYRPISILPIFSKILERIIYNRLYEYLIQNKLLDKKQFGFQSQHSTEHAILDIVNSISD
SFNKKQFVLGTFIDLSKAFDTINHDILLKKMEKYGIKNTTLDWFKSYLCNRQQCVISNDNKYSNLLEIKCGVPQGSILGP
LLFLIYINDLPQSLKKLDAVMFADDTNLFYSSASIENLFESVNDDLENLNTWFKVNKLSLNTEKTKYILFHSNHQKNNIP
RMLPLLKIDNINIERTKTVKFLGIIIDETISWKAHINTINTKISKSIGILYKVKPLLSQKNLKSLYFSYIQSYLTYANIA
WGSTNKSKLNSLYVHQKHASRLIYNKNKFTHADPLLKNLNALNVYQINIYQNILFMLKYMLGLVPSHFTNNFFQTYANRY
STRGTGNFTLPIKKTKFSRFSIAYRGPYLYNKIISQNIELTKLDNLTILKKKLKDLIINKTNFIDMY
>CR1-56_HM_gag#LINE/L2 72-812   [Hydra magnipapillata]
MEINVKNIEKIITSKLEEQKRSILAETERLLKDHEKNFTSIISSNFKIITARLDKMDAEINNNKLNIRKIENEVNEIKVS
LNFQEEKSRDEFTLIKTKYENEIMMLKKKSIDLENRSRRNNLRIDGVKETPEENWSDCEKVVKDIFKTKLNILGEVVVER
AHRVGTVKDRKTPRSIVLKLLNYQDKNKILSSVNKLKGSGIYINEDYAKETMLERKKLWEEVKQLRNEGKFAVIKFDKIY
CRDFRK
>CR1-20_SP_pol#LINE/L2 83-3058  [Strongylocentrotus purpuratus]
MNFDLEINQDVTENESTYFTTDDFNAAFNLNNDGHNQQSLSLLHINARSMNKNFDSMDLFFSSIQHFPFSIIGITETWLN
NKSPPLFNIENYKLIRADRNYGRGGGVALYIHDSLTFKERPDLSVDGSEYIFIEIINKQAKNILVGVMYRPPHSNIDTFV
DRLEENLSLISRENKIIYLMGDYNINLLPPALNNIGLRLLTTLSSYSLHPHINKATRITSITETLIDNIFSNIFNENSQN
GILYSDISDHLPIFVISPTIQLFKHESMKHIYVRKEMDADIQSFRADLASESWVDVFNLVVANDAYDIFLNKLMYYYNKN
IPLVRIKLNKKKAKKPSTRRGILRSIATRNRLYKKALRSKDHIDLDKYKKYRNKLTSIIRLSRKLYYSNKIASTQNNNSL
WNIIKDLTGKKKHINTTINVNGQDINNLNECANYFNEYFVNVGPTLASKIDAGNNHFSQYLLEPSENSLFFTPTTIHEVV
SIVQSLKSSKSSGPDGLSMNLIKQIIHFIVSPLVHICNISLSTGSCPNLLKIAKVIPIHKRDDPSKLQNYRPISLLSSIS
KVFEKLVYKRLISFLNKHDILIPNQFGFRKNHSTDFALIKLCDKIIESLANKKHVIGVFMDLSKAFDTIDHTILLHKLEH
YGIRGLALSWFEDYLKNRTQYVYYHSNSSSKLNLTCEVPQGSILGPLLFLIYVNDIIKSSNILTYILFADDTNILYSHKN
IDTLVDTVNHDLCNISIWFKCNKLSLNISKTNFIRFRTINSQDQPQCNLFIDGLSLVEKQSTKFLGVIIDSNLSWNEHIH
NINILISRNIGILYKMKCLINDRSLFMLYNTLILPYITYCNIIWANCSKTKINSIFLLQKRAIRICTHSNYLANSNPLFS
QLKTLKVYDIHTLQTAIFMYKYTSKTLPASFLNFYLLNVNVHSYLTRHAHDYHLNNPKLSLALRSIRHHGPDIWNNLPNH
IKTRTSLYSFKALIYMKAYLLTQYSLLDLIT
>CR1-20_HM_pol#LINE/L2 685-3830 via tfasty with CR1-11_HM_pol, 3 frameshifts and 2 stopcodons  [Hydra magnipapillata]
EKKSLKRFKHFKYKYTVNEHFYYSLNYLFDVICISETWEDANLPMSENSLYNLVSYKMISQPRVNSKGGGVAVYILDKFE
FKKNNTFSKTNKHIETLCIEVLNTSGKSFLISSLYRPPCGKQVNFLNILKNFMSQMSKQNKHVFFAGDTNMDALSYEKFA
NIKNFFNLLFEFNIIPTIFKPTRITNQSSSVIDNILTNCSLNTKFESGLFIADFSDHFPVFHIAREVLSNIDKKNALxLT
EIFLxKNLNNFKNKLQVEQWDKVYSSTDPNIAFDHFSSTFQNIFDNVCPKITTEIKNKEYKNPWMTITLIKASKRKQKLY
VKFLKSKNKEDEKIYKNYKKFFQHSMKEEKIRYFSNQLDKHKFDIKRTWAVINELTGREKKKHTCTCLPQKLISDKKNYN
KYKKICQEFNKYFVNVGPSLASNIVQPNKTFDNFLGEKPTTSINNEKITKLEFNKAIIELKRNKSCGYDGISSNVAIYIM
DSISKPLFYLISSSFENSIFPNKLKLAKINPILKKGDCNNVSNYRPISLLPVLSKVFERIIYNRVNNYFTLNNLLYKNQF
GFQSKCSTEHAIIKLADKIFKSFDSDELVLGVFVDLSKAFDTVDHSILLSKLKYYGIIGSTFKWIQSYLSNRKQFVLLEK
SGALDITCGVPQGSILGPLLFLIYINDMHKASQKISTIMYADDTNLFFNHPNAKTLFETMNIELEKFNLWFIANKLSLNC
QKTSFTLFHKNKKQSINLPLKLPKLLINKNEIKREKCTKFLGVLFDENLSWRNHIGLLETKMSSVIGVLYKSRPFLDSKS
RNMLYFSLVHSQLLYANIVWASTHKTKLLKLQSLQNHACKVINYLNRLVNPAPVMKSMMVLDIEKLNTLQILIFMYKYKN
NLLPSVFSDIFLISFSEKYNLRSNTRYNYHLGKIKSHQSNFLITNRGPSIWNHFQNKNIKDLKSISSFKRETKMHLLNS
>CR1-35_DR_pol#LINE/L2 1-2419 Fragment via tfasty with CR1-1_DR_pol, 4 frameshifts. [Danio rerio]
NIAMKYDRFLLVGDFNIHVCCQANPLSKEFLNLIDSFSLVQWITDPTHVLGHTLDLVLSHGLAVSDIxSDLSLSDHKPIL
FSMSLPTLPLSTNVNVTLSRYYSPTFGANFNQCFLETCSHHSLDLPLFDLDADKHLSLLNSAWLSVLDVTAPFKPHIKNV
KSALWHNSNTRLLRQACRKAERKWKKDKLQISYEMLKDSLSAYQSAAKSAKASYFTDLIVKNHSTPKALFSVIHSVVNPA
VQSMPVASNALCESFLRHFTDKISILRTKLCSAPIDPPPPTLHLVYWDAFDPISLQSLKNVIANTKLSFCPNDIIHPKFL
KQIIDTVGPGLTSFFNKCLSTGSFPNELKMATVTPLLKKPSLDPSILNNFHPISVLPFCSKILEKIVLDQLQSFLKTSNC
ITEIFQSGFKMAHSTETALLRVLNDILLATDSGDSVVLVLLDLSAAFDTVDHSILLSRLESVVGLKGTVLKWFKSFLSER
KFSVKLGNFSSSFADLTCGLPQGSVLAPSLFSLYMLPLGAILRSHGVSFHFYADDTQIYLPIKRNDPLALSTLLRCLDEI
KIWLSHNFLSLNEDKTEVIVFSPTDNVQASCLDLGCLSAFRSPRVRNLGVILDESLKLDKQISLVIGSSFYQLRLLSKVK
HFLNPTTLEMAVHAFITSQLDYCNALYCGMSKSQVSHLQLVQNAAARFICNSRKYDHITPLLRGLHWLPVQFRIDFKVLL
LIYKSLHNLAPSYLSELLHLYTPVRSLRSSEQNLLSVPQSRLKRRGDRAFSVAGPRLWNTLPLEIRMAPSLSIFKSLLKT
YLFSLAF
>CR1-38_HM_pol#LINE/L2 780-3916 via tfasty with CR1-29_HM_pol, 2 frameshifts.  [Hydra magnipapillata]
MNPKTDKYKNLFENISDKVFKINDQNTFNKHDPDNSFIDNFSLMNMETPYMFPHEIKKYLKEVEPYEGLSLIHLNIRSAK
ANFENFKIFLEGSNFIFNIICLSETWLTDDEFNESVRFQLNNYEGVHLQRKSKNRGGGVVIYIKNSLRYKLRNDLCISDY
DREFVSIEIINNGFKNTIISCCYKPPQSSTEIFSNHLQNIILKSFQEKKSLFVVGDFNLNALNYDKNKETQNFYNDIFRF
GVIPLINRPTRITRNSSTLIDNILTNSLFEISLKKGVIKTPISDHFPIFISIKTSNKIKISQKMTITRRHFSLDSQVYFK
RELANIDWSDLESSNDTNLMYNKFIKFFLFFYEKHFPKVTKTIKLKDINSPWLSKGLKKSSKRKQKLYIKYLKKKSDKTK
TEYKNYANLFEKLKKTAKATYYNKLLKKCQTDSRKTWQLLNEIIGKPKTSKPCFPKTIKINHKSIDNENDIANEFNNFFV
NIGSKLASQIPRVNKSFDKYLIRNRNKLNNEKLTMLEIEEAFKSLKRNKATGIDDVNSNIVINCYNELKNPLFKIFKHSL
KEGIFPEKLKTAKVKPIFKSGDASEIGNFRPISILSTFSKILERIMHNRLYTFFKENNLIYSKQFGFQKNTSTEHAILHL
VEEIKNSFTNGEVTLGVFVDLSKAFDTVDHKILLSKLNMYGIRGRSNKWIESYLDKRVQYVYYGDNKLSNPSIIECGVPQ
GSILGPLLFLIYVNDLCMASKRISTIMFADDSNFFISGKYNSELCVEMNNELEKISEWFRANKLSINSSKTKFSLFHPSF
KKKRIQSFFPKLFIENREIGRDTVTKFLGVFIDENLNWNKHIAYIGSKISKSIGIIYQSRYLLKKPLLKQIYYSFVQSYL
NYGNIAWGSTYKTKLEPLYRKQKHAIRVINFKNKTEHSKPLFEQMSLLTLFELNVYNVLSLMYNSKMQKSPSIFYSLYKQ
KPEYKYLLRTNSTLLEPSCKNKLEQFKMTYRAPHIWNKFLLINLNNIDLKNLNCFKKTIKKSILKYKNLVSDFFLNLFIN
IFFFI
>CR1-37_DR_pol#LINE/L2 2-2510 Fragment via tfasty with CR1-18_DR_pol, 1 frameshift and 3 stopcodons. [Danio rerio]
YRPPSSKSGFYDNLKHFMKELDPKKELILVGDFNINWTEKLQRKKLQEIVSSFDLVQLIQGPTRITSSSETQIDLIFSNK
PERVTKSINLLTGISDHNLILVVRKLTKHRFLYQQDKRNVLNVIPKKLKNxFEEEIKKLDxSEILSTDNLEDASECLMAE
INKTKSKFSRNITFSKKKKKQNLPWLNEQLWKLMRQRDHALKKSIKSGLAHDKRTFQQLRNKVVKELRQAKAIFLIDLIN
NAKGNSREVxENINKVQKKITINNKAIELQSQGRLIQDKYQIARLFNNFFIDSAQDLAQGFSFRSKDITLPNYDFTVFNI
SEVSESCVQKFLSQLKSSRAKDAFECDSAFFKKYANVFNTPLTHLVNLSIRQSYVPSAWKSAVITPIFKTGDPTNLVNYR
PISILPTASKVIEKVVCNQLVEHLNLDKFPLHSMQFGFRARHSTETANCYFIEQIKSSLDRGGVVGAVFLDFKKAFDNVN
HNILLSKLSRFNFSVNALSWMESYLKSRKQCTRINGACSPYINCNFGVPQGSILGPILFSLYINDLPTVCPEVQVQMYAD
DTVVYTHAKTKEHAAKKLTAALKKVSDWLYRSCLTLNVSKTVGMFFSIKKNEEHCSDILVNGEVINIVDHFKYLGIIIDS
NLNFKKHIKKVSKSARASLRIYRNIRHQLPMAAAKLFMNTMILPHLSYCATSWSHTNITTLKPLYVIYKQTVKILAKKPR
SYHHCNCIAQQKLLTFDSFLFYADVCLMYKIFHDLAPPPLKQCVIVGKDNIRQTRSSVRGDCSVKLKRTAFGQSVFSVKA
AERWNKIPVYIRESSTFNNFKTVLKIWLKQNQICSH
>L1-11_DR_gag#LINE/L1 6-1046 fragment [Danio rerio]
PSNARFCETWCLTQNGGVRLLDKQTKNFGVISIFLLTFHHRISLIKNWTISLHLDYFLFSFFFHPGSTGRLHRRTLQHTL
LQYEHARSHRKGNLTPISKRPRSNSPLTMNSTPSSPSCCTEVSDILRSIENKLSGLDTRIALIEVIHKEFQELRHSLEFS
QEQIDTLTKENNFLKDSVHALSTQLTSVVKENKSMKENILDLQTRSMRDNLVFTGIPDQTPDDPEKLIKDFMTKQLKLPA
ETVQTITFHRVHRIRSQQNSNRPRPIIAKFEHYKHKELVQKQGRQLKGTTYGLNEQYPKDILDRRKQLFPIRKQKINEGK
RAIITVDKLFIDGQLFRDKDITPWLF
>L1-10_CPa_pol#LINE/L1 550-4183 via tfasty with L1-2_CPa_pol, 4 frameshifts. [Carica papaya]
MINKIISWNVRGLNDSKKRNIIKGCINRWKSDLICLQETKMAVIDKITVNSVWGLQDTDWLYLPADNTAGGILICWRSDM
VECTDYIKGEISISCLFVNKKNKEKWYFSGIYCRGNASDREKLWNELLQCQARWGVNGVVGGDFNMVMHRNERSGNNFSA
SVAQEFKDNIDSLGLEDIPLKGGKWTWSNQRDKPSHSRIDRFLISTELLLSLPGLNQKVLPRPISDHFPICLTSDGIKWG
PTPFRFDNKWLLVNNFKSMVSMTWNQQIERGTASFKLSKKLIRLKQDIKSWTKEVGLKEENRTNDLLNELAEMDILASDS
ELLPEQDEKRNSLREELANRLHMEAVSWKQKAREKWIRDGDKNTKFFHCLANHRRRVNYVEEFSVNGRLVSGNEAIREAA
KDHFKSLYTESIEQRPKLDNIHFNKINDADRTTLEAEFSEEEIYDCLKESDGDKAPGPDGFNLKFFQEFWYVLKNDILDF
FNDFHKNDSFVKSINSTFLVLIPKKEGASCFADFRPISLVGSVYKLFSKVLARRLSKVLKSIIGDCQHAFVEGRQISDAI
LIANEVVDDLNRNKKRGLLCKLDMEKAFDNVSWDFIDYMLNRFGFSLKWRKWINTCISTTSFAVMVNGGPSTFFNASRGL
RQGDPLSPLLFIMVMEALNKLIEQARNLNLIRGIRMGKEENIEITHLFFADDTLIFCQPDVNMLLNLRCILLCFQAVSGL
KINMSKSEMVGFGINNDVDPLASVLKCKTTTLPIKYLGVPLGAKHKDPKSWEPIMDIFDKHLAGWKRNYLSKGGRLTLIK
STLSNLPTYYLSVLTIPTKVAKILERTQCRFLWGDEENKKKFHLVNWEEVKTPISSGGLGLRSIKTLNKALHGKWAWRYW
NESNSLWKKVVDCKWNMKGCLNQNLMNRSNYGVSLWKSISRVGKEAMHCSKWEVGKGKKIQFWSDIWCGNKNLQSRFPLI
YALAKDKLMRIEHAVDNSTGSCWNIVLNRNLNDWEIEEFDNLMAMLESIRISDKDDKLIWSLNKSGSFSIKSFYNHIAGQ
NSRIKQVFPAKMIWKASAPPRISFFAWEASKNRILTIDNLMKRGITLTNRCYLCKSNSESCNHLLLWCPITYSLWTMVYG
LLGILWVAAGTVKDELLAWEMISRKNKKFRLIPLTIFWVIWKERNNRAFEGKEDTFSNILSKWLHIFGSIVLDHSITHSD
DLGSIVDMLIDL
>L1-11_STu_gag#LINE/L1 154-2048 via tfasty with L1-4_STu_gag, 4 frameshifts. [Solanum tuberosum]
MGDNRIYFNQGFKSYDITRWTSNNVAWYDWVERSRKKMRRVTLSEKVMEWNCSLLREASSGQKNQVRRWRYKDRAAEFFG
TRKHNAHGRCMSILSLKGEDRTDIIVPESDINAGWRSVAFKIQSFIKCTPQKEKIKTRKRDTKVPYAKAVEGSKWQSSRH
RGAHNQGQRDWSRGEAKSREQGLLGRCIIGFFDKEKAERPTLSEVRRWSTMVWKKAFGVNIYEMRGGRYLFEFPNRYMAE
QVLQGEWMWKRSKIKLEWWNPNAGCEPTTYKPKSTWIRAMGMPMHLWTDETFKEIGELCGGWLVTEEETELRNHLKWARI
EIRGDGRSIPSEVSISRDGTKFIIPIWAERKTLFEFPPESNRTTTGEDQLKIQRIIDPQPSISEKAEVQVVDVDVTEGNH
VEAAVQIFKKTKVCTCGMCSFKKKLDSRSTGPDQATIIFNNFSPQPNSDLQEVVIDESLENYSSRDVTGRKTPNLQNLEG
TQPREEGFEEGKEAEISCLPINEVNACIISGETVANENESQQKHLGMDNSGELWDVQEIEPLRTQQQGALTETEWKATAW
VQQNLLKLHKMFGVDFQGLEEEALELLKQVDASRQARRMERTIEVKRTKHKGAQELKNLIAFDVKFKSNGDRE
>L1-12_Mad_gag#LINE/L1 153-1599 via tfasty with L1-3_Mad_gag, 2 frameshifts. [Malus x domestica]
MVSDSAPLPRNSKPPSMKARTFASIVSDSTERVSLSQLPIPVIRGDQIFVKISEDLYQQQLQSFRTNLIGRLLLRKGTAP
LKTAELKSSLEALWRPVAPWLLVPLGKGYIDIHFNTEDDKRRIWGGGTCTLPNGIFRLSEWQPRFNPNDIAPPTHAQVWI
RIYGLSQDYWHPRHLLEIARGVGTPLQLDKATKERQFGYYARALVDVDLAVDLPSSIMVEHEGHSFPIDIVYEKLPDKCN
HCGILGHTVDRCRHLKKKNVAMDSQPSLAAGRKVNNRTEYRVIQDPKRNECVDLIVVDKMQPIEEVVHSSSPMELNSPLV
QQHGQSTRRLANEIIESAANEIINLVADLVVNEPMEVTKPTVGALISKPTGKALQNEQGKNVIGDDSESDEAITPHSQRF
EVNYGDLGTNVGQLVCQHSSPNSSDLQEGAKICDIVNEDGMTLVLSKSQKAKMRKKIRDGNISKEVREPYPTRSRVPTER
LDL
>L1-12_GM_gag#LINE/L1 151-1604 via tfasty with L1-6_GM_gag, 3 frameshifts and 2 stopcodons. [Glycine max]
RANWRDHKDVNFLLLHxVPEDATAKDLWFHFRAGGDVREVFIPRKRNRQGRRYGFVRFKGVRDVHQLQKKLDSMVFGGLK
MYVNVPKYGRAKKGESQTAERGRAEARQPQEGRRDMYLSRKPETKVGVQRGSYAEVVSRNIPRQNRGEHQPRSNTLVTIR
LEVNLDIPLTGQQWLKEAWVGRLKNLASFDSIEDDIWWDSGQNISPKYIGDDMVLLLGLTEEKAERMxMKKMKDGATLFY
SIEKWNPKLRPGFRLTWLQCWGIPLVAWDMHHIKQIVSGIGEVVDADDSVEERRRLDVARILVKTPWKPLIQHTVNVQIQ
GETFPVHVAEESGPSGARWQPRRERDFSSSEEIHSDEGDDEASSGGELQAWRHKPRTGAWRRTDEQQGGRGLGGRSTEDM
ASGGSDGGRGRQPRREKRIAPSKTQRGAPAQTETVDGAEDRGGDEERPARGGKKGDHAGRSVRRTGGGSGRCGPKRGAVG
TKQRT
>Polinton-1_NVi_pro#DNA/Maverick 11022-11739 via tfasty with Polinton-3_TC_pro, 1 frameshift. [Nasonia vitripennis]
KIVDVRLPQRALTNIDLLKYAKILKIPYFRGVFMRNALPINGPHYRESAIVNLDDATGPGTHWVAYRKRGSEVVYFDSFG
DLQPPLELMLYLGVDKIKYNYERYQDYDTFNCGHLCLEFLENQKDSIGQLLGFTQRLLSSNVSHSSDLPVSILKVNVLRV
ERKITTGAYINGKKVHTIHEFFPAVPPGYKIIAVXSQVIYLRITVKSIDQLQIRIVDEDGHLVNFRGEVITVRLHLKQV
>L1-7A_XT_gag#LINE/L1 113-1084 L1-7_XT_gag over 90% identical, [Xenopus (silurana) tropicalis]
MPPKNPPKAKSEGVQKFFSKTQLQDGGGESDTTMPEILAHPLQPPAESAEPTLHTLMSAIVDSKATLSTKIADTTATVTT
KIEELRVDLSLLRQDMQVLRERTSEAERRISTMEDSLSPLQRQVQQLQREQANLIAHVDDLEKRQRRSNLRIIGLPEGVE
GQNVATFTESWLKDTLGPETFSPYFAVERAHRVPNRKPPPGAPPRPMLLKLLNFKDRDAALKAARLKGNIICDNAKVSLF
PDFSTAIQKRRSTFTEVKQRLRNSNIKYAMLFPAKLRIIDGDNTLFFDHPEAAIQWLENKPRAHGPQRSPRRPRNEVLPE
MDQP
>L1-8_GM_pol#LINE/L1 2456-6127  [Glycine max]
MNILSYNIRGLGRGIKWASIRKLVGKFKIDLLCLQETKREAXDEACCRSLWGQSDVAWXWQPAVNAAGGLLCAWNPNTFQ
VDSRVXDKDFIMLGGVWLPDMXRXVVVNIYAPCDLXGKRQLWQNLKNXKIQSQDXXWCLLGDFNCIRHPSERMGCNRSSS
DNSTIAEFNEWIAELEVEDIPCMGKPFTWVRPNGSCKSKIDRVLVSDGWLDKWPDSSQCNLERNYSDHCPIILKSKSIDW
GPKPFKVFDAWLNNKEYQKVVRDCWADNQLFGWGGFVLKNKFKILKARLKLWSKENAADMCTKVNQIQQEMNELENSLPS
QPSDQQVQLLKKLQAELWDKANFYESTLRQKSRSRWIKEGDSNSNYFHKLINHSRRRNNLRGLTIDNCWVEDPNLIKAEI
LQHFQRRFQESQLHRANLDGVSFNVLTHIQRDSLIEPFKEEEVRCAVWSCGNDKSPGPDGFNFRFIKFFWEDLKPEFLRF
ISEFYVNASFPKGSNSSFIALIPKIKDPQLISDFRPISLIGCMYKVITKLLANRMRNIMSQIIDERQTAFIKGRQLLHGV
LVANEVVEEARRSKRPCMIFKVDFEKAYDSVSWQFLFYMLSRMGFPERWSRWIRGCLTSASISVLVNGSPTAEFKPQRGL
RQGDPLAPLLFDLVAEGLTGLMREAVSKQCFSSFLVGSNKVPVDVLQYADDTIFFGEASMENVKTVKGILRCFELVSGLR
INFAKSKFGAIGQTEDWCLHAANHLNCALLQFPFSYLGIPIAVNPKRRMMWDPVIRKFEDRLNRWNKRNISMAGRLTLIK
AVLTALPLFYLSFFKAPKTVINRLSSIQRQFLWGGKSDEKKIAWISWTQCCASRDAGGLGIQDLRILNNSLLIKWKWFMF
HQPDQLWNRILISKYQGWRGLDQGPHKHYFSNWWADLKALNQDHNMNAVLKQFCWKMGRGDQILFWEDAWAEDGFPLKDQ
FPELYSISSQRNHIVADMGSFSEDGWEWNLLWRRNLFDHETEIASKFIDLISMTRLNSNLNDTWVWRADISGNFSTKSAY
QLLKDEQSSEVQYLAFRQLWDIKIPPRALSFAWRLLWDRLPTKDNLAKRQILINNDLCPFCNSKPESAPHLFFTCDKIQP
LWWEFLSWVKEDRTIHCRPMDNFLQHAPTVGNRAVGRRWKIWWLAATTSIWKVRNDIVFQNQSFDISKLADNTLFLMWTW
LKGWEKDFTVPFTQWSSAMSLVFI
>L1-9_GM_pol#LINE/L1 2436-6094 via tfasty with L1-2_GM_pol, 8 frameshifts and 2 stopcodons. [Glycine max]
MNILSFNSRGLGSGVKRSAIRKLTLANNVDILCIQETKKESIDKKLCQYLWGDGNVSWEFVPSINAAGGLLCIWNNESFV
VDRRVVGRGFILLEGTWTKENKKVFITNVYAPCDLQGKRDQWEELKHLKSSYHDGPWCILGDFNSIRHQHERMSSSQSVG
NSTSISEFNSWISDMAVEEVRSVGRNFTWYRPNGTVMSKLDRFLLSDEWLSQWPDTTQFVLDRDFSDHCPILLRSRIIDW
GPKPFKVMDWWLKDKGFQNMVAHRWGNYHPSGWGGYALKQKLKFIKGCIRQWSSHNGVINAKKIQDLKKELNALEAGINA
SIMSQAEVELKKSLQEQLWNAAHAYESMLRQKARVKWLREGDRNSAYFHRMINHRRRLNAIQGLIIDGGWVQEPSSVKTA
AFNHFKERFSEQNLNRPTLDGVQFPSLGQGEKESLVARFSEAEIKSAVWACGGDKSPGPDGLNFNFIKQFWEILKPDFIR
FLDEFYINGTFPKGSNASFIALIPKTNDPQSLNDYRPISLIGCVYKVVSKVLANRLALVLPHLIDERQTAFLKGRHILHG
VMIANEVIAEAKSKNKPCMIFKVDFEKAYDSVSWGFLNYMMMRMGFCERWRKWIHGCLSSATISILINGSPTREFVPERG
LRQGDPLAPFLFNIVAEGLSGLMRTAISKNLFSSYQVGSRRRRSIFCNMQMTLCFLELQYGQCxSPEVYPQNLxAGFGLK
INYAKSQFGCLGKSEAWCREAAHFLNCGQLGIPFSYLGIPVGSTPKSWNVWQPIISKFESKLAKWKQRCLSMGGRITLIN
SVLTALPIYLLSFFRIPKKVVHKVVSIQRNFLWGGGTEAAKIAWVNWDTVCLPKSRGGLGIKDLTKFNEALLGKWGWDLA
NNQHQLWARILMSKYGGWNALCYGRDSAHFSPWWKDLRSVFQQHHSNSIINNLRWKVGDGARIKFWKDKWREDDLSLKDK
YPTLYQVSTQQDHTINSMGLLVDNRWEWKFQWRRNFFDHEIDMAAAFMADIDDVQIQPSSRDFLIWGADPGGSYSTKSAY
NLLKDDGSSVAEDSASKIIWNLKIPPRASAFSWRIFKNRLPTKANLRRRHVELRSYNCPLCDEEEETVGHIMFSCTKTRS
LWWETLRWVNRVGPFPIEPKDHFMQYLSWSGKSYVDKRWEVLWIALSMTIWKHRNSVVFNNQNFSSEKVMDEALFHTWSW
LNAWRKHFHIHFNQWSTSLKE
>L1-9_DR_pol#LINE/L1 3-785 Fragmentlet [Danio]
TPICYNHAFKPSLTDKVFEQWQDKPVFSVTDLYINNIFATFSQLSEKFNLPPSNCFRYLQVRNYVRLNTPDFEVLSLEGE
LFDLFLNSSNARGLTSLFVNAFKNKANCSSLHLKVALEEDSGISTSETDWDQCLLSVYSCSRHHLIQYKVLHRLHYSKTK
LDKFYPSVSPTCDKCKAAEGTLHLFRSCVQIQNFWLEIFQFFAKVYDCVLLPDPMIAIFGWSDFLETLNRNVRLPVQYGM
IIAKKVILCFWKKNVRPLFF
>L1-12_STu_gag#LINE/L1 80-1854 via tfasty with L1-8_STu_gag, 1 frameshift. [Solanum tuberosum]
MRRVEISIKVLKWLVAVFIEASKVQGRTVKRWNMKDHFAEFYCTLKYNESGRYISFIALQGQNKSVIITPESTLKGGWGN
IAHKIAGFIYEPDKTQGIAVKDNKQLHRSYKEALFRDRWVTEATEKAEIQSTANRVRITGGKSQSEKDLLNRCIVGKFQC
QANENPNLNDVRRWACNSWKSAIEVKVYAMNDGHFMFELPSRLAAEHVLTGQWTWKKMKLELEWWKPTTGCWPAEVRRDW
VWIRLLGLPMNLWSQKVFKEIGNLCGGYIETEEETSLKNHLHWARIKVQGDGERIPREVEITCDGFTYTIPVWCEAPVTV
KFSEERREEKGKYPAVNTQDQLLQMIKEVLPAKKVDGHVGSSSEGSLMQVGPRFKRGEYNVYSRQKLGQRKLGPNLGPIL
LDPIAGEKARAQALQIPSEDIINIEISANQTKENKAQSQITPWNRDDGELEVARHMVDMPGKIRKNWGRKVQQIMVQPLA
EENTNGGAEDVIPLGIQFPEEDYNTLSTSEWIQQNIIKLSSEFGVNFKGCEERAKELLMKIDSNKQESKGKQSEQSTCKK
KGQLELKNLQLDSKFHSNGSRSKGGYLAIMDQ
>L1-20_XT_gag#LINE/L1 143-1027  [Xenopus (silurana) tropicalis]
MGGHRKTSEAPASKMDKFVRHQNQDGGRASRPVTPPAPTPSTAREIDQAPAEPTLQEVLQAIRDTRTAVEVKIDTRVEEV
KIDLALLRQDLQKVRERTAEAERRISDIEDATRSVPQAIAELQNQLKQSKARADDLEGRQRRNNIHIMGIPEGQEGTNPE
LFLEKLIKDHIGTGHLSPMFIVERAHRIPARQPPPGTPPRTMIAKILNYRDRDTILRQMRIQGDLLLGDAKILFYPDYTI
EVQRQRAKFAEVRRKLRERGISYSTIFPAKLRLIDGNSTKFFSTPQEAMDWLERH
>L1-18_STu_pol#LINE/L1 2005-6167 via tfasty with L1-1_STu_pol, 1 frameshift. [Solanum tuberosum]
MINIISWNIRSVRTLSAFERLKNMKNQFNTSFISLQEPFVKADQIEYYMRMLDMQGSYANVNNKIWLLWTNDINITILHD
TEQHVTATANHTTSGTNFHISLVYAKCRTNMRRDLWEDLVSISNNIQGPWSIVGDFNVIAEVEEKLGGTPYRLEKSFEFL
NFMEDAGVQDAGFAGNIFTWCNNRDAPSTIWKRLDRMLYNSEWFDHFSKTTVSHLARTCSDHAPLVIQLSSEEEEFKRYF
RFLNTWTEHPQFLDTVRGIWNIECHGNPMWVLHQKLKKTATHLSTWSKATYGDFYEVSKRLEKEIINLEQTMQSDKSPTT
RTTLNKTKAEYVSYLKIQENILRQKAKVRWLVDGDTNSAYFHKVIKDRRRRTGINKIMDEDQQWVEGNANVAEAGVKYFK
GIFGQVPDYNDFQALEGINITITDDINHALTTFPTEEEIRSNLMTMDPDSAPGPDGFTAKFFQTCWGVVAPEVTKALHSF
FCGASLPKWFTHTNIAMIPKINHPQQFSDMRPISLCNVISKIFSKVLNSRLSKVLPLLISNNQSGFIKGRSITENILLAQ
EIIQDIGSTNVEGNVVLKLDMAKAYDRVSWPYLCILMRKMGFCELWIDLIFRHISSNWYSLLVNGSRYDFFQSNRGLRQG
DPLSPSLFVISAEFLSFKLNNLNHNPEFIGFSMNKRGPIINHLAFADDIILFSSGCRRSLELMMKVLGNYEKVSGQEVNK
MKSSVSLSSKEHSQAKQRIQEITGMTYKSLPIKYLGCPLYEGRKNNALFSGMMSKILHRIGGWQTKFLSIGGRSVLIKHV
LLSLPVYTLAAIHPPIGVLNQMEKMFNRFLWGGSGEKKKMHWASWNSMCYPYDEGGVSFRRLQDICKAFTTKQWWTLRAT
NSLWKEFLMAKYCQRIHPVIKRWYSGNSHSWNAMCKIKSTMDQYILWKIGRGDVSVWQDNWTGFGALWQLFPDDRKPREQ
KIYDIYINGQWHWGGWDIFIPNHVMEHIHSMNVDLNLNIDDRPIWTPTQNGSFTVASAWEIQRQKNDKSWFDSNTWCKKV
PLKMSFILWRVVRDRIPTDSRLTKMGIAMPSRCCCCKSPQEEDVDHFSCSGEFAKKIWSILCGPLGIPFDNIPIRMLIKF
WWTWKTKNPVLNMLMKCLPAITLWELWKARCGAKYGKDNYNTRKTINNISTSLVLILKGQFEKIKVDPDWESVRYLLISN
IYDKKIVQVKWLKPSNSFVKINSDGSCKDGYCGGGGVIRDHRGHLIFAYSLNLGQGTNNWAEAKALLYGVEWCVRNEYDY
ILAESDSKLLVDCVNDINSTPWRIYDEVRELKAHMETTGFILSHCYREANKVADHLASLSYDNPNNMAYDAFAELPTRVK
GLMNMDRWEMTNFRTMKKKRNDLIWEPP
>L1-24_XT_pol#LINE/L1 1219-4926  [Xenopus (silurana) tropicalis]
MSEVSTQNLKALVLNQVYKSKPDIVLLQETHLTGQKLLALKRFWVGHMYHAPFSTYSRGVSILIKKTLIFELLQLHTDFY
GRYIIIHCKINNQTVILVNVYIPPPFAIEVLQLISQKITALPPDPICLLGDFNATLHPMLDRTSGVDPATPQLTRWMEAM
GLSDLWRDRHPSDRQFSCYSAGHATLSRIDLALGSVDFAQIVHKVAYLPRALSDHSPLWLEIQLGPPQGQRLWRLSPLWL
TNQTVADTCTKEFGEYWEVNNNTASPLVVWDTAKAVARGTLIATIHATRESKKTEIKAAEKELFKAEQAHCQAKSKDTQD
SLSKAQRDLDLLLADSTRKKLLYSKQRGFDLGDKNSKILAYMAKLTDPITVIPGIRTPTQEIVTDPTTMANMFAEYFKEI
YSPQTCTSGINLEQFLGSSELPQLSPAEVKLLDNPLTKAEIDAVIADLPANKTPGPDGLPAAWYRLLADQITPKLLETYT
YASQTEELPSSCYNAIITLILKDGKDPYSCESYRPISLINTDTKILAKVLANRLIKVITSFIHPDQTGFMPHKTTSINLR
RLYTHIQLAHQCQTAGAVASLDITKAFVNWQYLWQVLEKIGCGPMFISWVKLLYKKPVAQVRVNNTLSEVFELKRGTRQG
CPLSPLIFALAIEPLAAKIRQTPMVKGIKIGNLEEKVALYADDVLLFLADTNLSLQTALEILEKFGRLSGLWINKTKSVL
FPLGSSVAGDNPPALSLVSRFRYLGIIVTTDPSLYTNENLEPILAKFKSVTPHWNKLPLTLWGRVNLFKMLYLPKFLYPL
WNSPIYITNQFFKKLNSELISFIWANKAPRIAWLTLTAPKEKGGLALPHLQNYYFAAQLSYIHNWFNPDRSNSLTALHAA
IMGSLEAIRNLPYRRQADLPPLPEVLTTPRKAWVKLQTKVRTPLSQLSGKAPLWRNSNLPHMRRLVDFQYWPQLGIRHLD
DLLVENCFASLEQLKVKLNGPNIQFFRYLQLRHAFHSQFGTYQLSPTLLSWEARLWALDPTKLVSQLYSIIQASHPAPFN
KAKRKWLATVPSLDEDQWDETTDNLYDFLISLRDRMIQFKMIHQIYVTPLKLKAMGKLERSKCVKCNMAEAGFLHLIWDC
PKVLTYWTEVTHYIEEHLSLPGIRSPEVCLLGIIDELIPLQKSRTLLRSLVFYAKKVVIMKWMSPIPPTIQQWIELINGT
LPLIRLTYNARGAPGKFEKIWEPWLDANPSISLPDD
>L1-24B_ACar_gag#LINE/L1 1193-2199 via tfasty with L1-21_ACar_gag, 1 frameshift. [Anolis carolinensis]
MAGVKQKNDRDLRDGRGIGIGRRPSQAEEVNLKDILREIQKLAEQQAEFQKESQLKLDKQSLQQREMCQELIEMKKEIKE
EIGFLKKEMARTYKDINDLKSENLKLSKSHNKLQKKVDGLEEKNIKLEKLQEKLEINEKESQLRFRNIQEESGENIRKIV
IKLIADTLQKEEEFVESEVDKVYRIQTNFSRRNRATRDTIVHFVKKKIRDDVLINNNRNPIYFKDKKIIVLKEFPQTILN
KRRKYLFLTDELKRQKIRFRWERNEGVMATWYGEKYWLTSEDKAKDFYQKLMKERKTNPPETTPPSSVKRKKPKRARLRS
PKDIKGSKGDIPITTS
>Polinton-1_GI_pgi1#DNA/Maverick 1948-1160 [Glomus intraradices]
MLTFSELTPSLTVTEFKINVEGLDYTVLGHKLEPTKDVIAINSNFIHKAFEGYEQYLSKPKGERRCRRSTPDNPLNRRRR
TGDGSTFNACIEFVIILADTVHTIRYFPKSGSIQVFGSFDPVAIFLRYLSECSLPEFSSVELVGGNKALLHNYKFVINIG
GDKFINLSTLAYALESIDGIREILPFPIKYIKNDAGDIHSKIAIIFTSKIRVHIWPKSGKVNIFGTKTELDADMVYKFLQ
KLFSNPNDFGDFICDAPIPDCER
>L1-14_GM_gag#LINE/L1 5-1351  [Glycine max]
MSRGRGRPKKTAPSSPASQTNIAEQAIXNNQDEDSTKHQVVEEIEVVDDDSSVSMPETLIPKLTCDAQGDPKEERKLWID
VLNDNRNPAKGMAIEYVQPTLVDGEIEIAIDEEDIVSEKKFWENALVMYVLGGELSMNGVKXFITKAWNFVQLPAIYYHD
DGYFLLKFXTHKDMDDVMLRGPYTVRNMPMLLREWKPGFNLKQDMLRTLPIWIQLPQLPLHLWGARSLGKIGSALGKPIT
TDECTAKKYRVSYARILVEVDVTQKLPNDITIRDSEGKKLKQPVHYEWKPMFCDKCQKFGHHCEEVKAKKVWQMKSKQGS
TSHAQPKENSTGLYNIETVDNGLESKKSVENGLKSTQAAGKNAGSSGVKGTNSADFQANTSTTVLNLVASGDIGNVAEYT
HEWSSRRKNGKDNGKKIVVDCTPNLIRCTNGFEALEDLNDPLVYQDGAP
>L1-12A_XT_gag#LINE/L1 14-1042  [Xenopus (silurana) tropicalis]
MVKKSQRRHGKGESTRLRNMHFQDGAAVNTERAVSPDTAVTRGTAAKRLAQYAREPLPQRSSRGMSPTSHLPTRQAEIEG
NGDTPPTQISAPFIKEPTLTEVLNAITTNHTTIVGKIDELKTDFAILKHDVQKLRERTGEAERRISDLEDTTGPLTGKLT
TTEKQIAMLETKADDLENRLRRNNIRILGLPERIEGNATEKFIEQWLIRMFGQAAFSPTFIVERAHRVPGRPPPPGAPPR
PLIARLLNYRDRDTALAEARKAGDLMYENQRISIYPDFSSEIRKQRAKYTEAKKQLRLKQIPYAMLFPARLRVTDKGKTH
FFTSPEDTIRWLEERPHDSPRRE
>L1-16_DR_gag#LINE/L1 Fragment 3-272 [Danio rerio]
GALKPRPSEGERPRIIITRVHFYQEKELILWLRRDRTLAYNGHKIFIFPDYTAEVMELRRSFGDVMGELRELKVSHSLRF
SARLSFQHN
>L1-16_DR_pol#LINE/L1 717-4497 via tfasty with L1-1_DR_pol, 1 frameshift and 1 stopcodon. [Danio rerio]
MTTNNQTMNIVSWNVRGLGHVIKRSRVFAHLKSLEADIMFLQETHLNAANQCRLRANWISQVYQAPFNAKARGVAILFRK
TVVFRLSSMVADPQGRFIMVIGHINSLPITLLNIYGPNFDDPNFFRKIFSIIPDTNTTNLIIGGDFNCYLDPLDRLSTKP
PPTITSVQMLHNLIKSRNLVDIWRLQHPTDRDYSFYSHVHKSYSRIDYFLVASELISNIGKTKYNNIIISDHSPVTLQLE
NILPKRNYCWRFNPMLIQDPTFLSYLNDKMDEYFSTNDNGEVSDSVxWDTLKAVMRGHIISYESSKKRALNSRLQEIENI
LPNYEQAYKKSLSNSDYNKMLKLKYEYNSILNRQISNLLLKLKQKHFELGDKPGKLLARQLRGEQANKVIHMVKTKTGDL
ITNPDEINGCFREFYSDLYTSKANHNDPNYDNFFSKLDMPKLSEVSKLELESEILIEDILKAIHAFPSGKAPGPDGFGCE
FFKTFSKKLAPYMLRMLQDSIKKNTLPDSLYDANICVILKKGKPETDPANYRPIALLNFDQKVLTKILADRLARHISTII
HPDQTGFIPGRFSFCNVRLLLNILYAKDKLTNKPAAILSLDAQKAFDQIEWPYIFETLRQFGFGDKFINWIKIVYLRPSS
SVLTNGIRSNPFVLQRGVRQGDPLSPLLFNIALEPLAVGVRTNPHIQGISLGNAESLISLYADDVLLYISDPVSTIPKIL
NYIDSFSKLSGYSINWEKSEFMPLTNNLSDTFLNNLPFKIVNNHFTYLGLNIPKNPKHLFKLNFLDMINRIKANIERWKL
LPLSLIGRVNVIKMVVLPRFLYLFQNLPIYLPMSFFKQIDSIILSFIWNYKIPRIAKAHLQKNTDSGGLGLPIFKHYYWA
ANARALTFWQRGVLEDVTYETSPLWVYAEAISVPESSLPTLLFTECKLIKKQGSCNFVVRNSLRILNQINKFYKLPKVSV
NTPISHNPSFKPSLIDSTFTAWKRKGLSRIGDLYIDNQFASFTQLKDKFSLPQSHFFRYLQIRNYVKENISQFINKPESH
IIQKLLSSNPNTRHLISSFVRVFEAPICTKHIKIAWAMDLNEEVADEIWEEALSRIKKASINSRHKLIQFKVLHRLHFSK
TRLSKIFPSVSPKCDRCGRAEGTLAHLFWFCPVLYEFWSSIFELFSSAYGTTIQPDYNLAIFGYSNIMDTFPSTQQQALM
VGMITAKKMILLNWKSPKAPCFKRWLNELLYVIQMERLRLETSQKKAETTWGPILRLLGI
>Polinton-1_NVi_int#DNA/Maverick 8101-7184 R [Nasonia vitripennis]
MQHKKVIVEELHKPARRNYPRRSFDVRGLDETWQADLVEMQPYAKENKSFRYMLTVIDVFSKFAWAVPVKKKTGEEVAAA
MKSILRQGRVPKNLHTDRGTEFYNTNFQTLMKQYKINLYSTYSNLKASICERFNRTLKNKMWIQFSLQGNYKWLKILPDL
ITKYNDTKHRTIXMKPNEVSTANQSQIFKRFTCESRLPKKPKFKIGDKVRLSKVKQVFEKGYTPNWSTEIFTISRVAATN
PVTYHLKDYQDNPITGGFYEQELLKAKYPDVYLVEKVLKKRGKQVYVKWLGFDSSHNSWIDKTEI
>L1-7_SBi_gag#LINE/L1 357-2302 via tfasty with LINE1-38_ZM_gag, 3 frameshifts and 1 stopcodon. LINE1-1_SBi basically identical and in even worse shape. [Sorghum bicolor]
MNPAASEQHSPCIINWTDDVARAEDDLAHAVIVTVIGDQPLAEANMLEAAIAARMDVEAGSLVLRRASASSYLLVLPNLS
LVERLVGLRQPLRASNFSLLCKRWSRLAGASGKVLPWLIDVELRGIPTHVWETSTVEHLLSPHAWIQQVHQDTIGLVDLS
VFRCSAWCSDPNLLPRSRELWVTEPPVAAMEDPPVKSVLEYHIDIRFSVRIQPGGPTPSPPPPPGDSEDQDASARRRRRM
RSPSPPHPSGPGPAADGPGASGAGMSNSGGAGRGPGHRRRDTATAFLEPVCDSQAACVVPLSSQAMSSAALTPLWPMVKS
xLRFPPRRRWLAEARQLPLPPPSPRTRQSACLMEKDLVLPRAGGGPRSEDYPDADPDLKSSCGDVEVGFGGATVLPASPR
SPLVFHPAEATVEPASPQSRFCPHIGVQPASRLSAAALDPARAPKAAVKPLQVYSRRRRCLHAYGPDGPVVAPPAAVEGV
PAQVASSAVQGANSSTPMVGVGGPSSLQDGVADSATPSPAGSPPPLPDARMTFINKLARRTAGLLPVPAINKRRSKTLPP
GATPRRSRRLAGAKVEFDLNDLERRTKKKAMRTLASLSENEGIDQQALDEYAKLFGQPLSDSHIQALAALFNWSLPEDLG
QGEEGEXLA
>HAL1-2a_MD_gag#LINE/L1 855-1943  [Didelphidae]
MTGGKEGKNMSKQQKKKKEITIDSFYPGNEQRANGTEEDQGTPSKNAETPANWTQALEELKTQFKKQLREAEDNWEKNLK
SKISHLETEAHELKQENSVLKARIDQLENEAKKVKDDLQRKTDQKEKDDQKARDEIQSLKIRIQQLEANDFTRQQESIKQ
NQKNEKIEENMKHLIDKTTDLENRSRRDNLRIIGLPENHDKRKSLDIILQEIIQENCPDILEQEGKVEIERIHRSPPAFN
PQLTMPRNVIAKFKNYQTKEKILQAAKKKPFRYHGTTVRITQDLAASTLKDRKAWNMIFRKARELGLQPRINYPAKLTIF
LQGKVWSFNKIEDFQAFIKKRPDLNRKFDAQTQNSRESPKGN
>ATLINE1_6_gag#LINE/L1 556-1419  incomplete [Arabidopsis]
PDLDTSELIKENSLTLMGRLTNPSVQRLWSMFPFLSNRCNLRGKALGSDLGKGCFQFKFDYEEDLLKVLDNRPYHYDQWM
VILQRWEPIISESFPCKIPFWIELQGLPKHFWQPEMLKTIGEELGEILDMEITSSAAKLRVLVDGLQPLTKETIVDFRDG
SETTVFLVYKNLKNHCHHCFRLSHETKLCPGLTESRGKDSVSVQPAVSQDSRGGSRNYYTPKDNFTAPRLSHHDCERTHY
SQEVSNRQRNSHPSSPVLSNHFSADRGRTQRERRGPLVEVTLWQFLR
>L1-1_SBi_pol#LINE/L1 2992-6552  [Sorghum bicolor]
MSDNKFLFWNVRGLNSRASRVCVRDVVVLEAVSVVCLQETKVQLFSDVMLSELLGADFDYLILPSVGASGGILAAWRKDV
WQAAQHNISSSCISVRLLPLAADXVHEFWLTTVYGPSDLALKESFLQELEGLATLCLGAWLICGDFNLIYQAQDKNNDRL
NRRMMSRFRRSIDMLSIEELHLHGRRFTWSNERARPTMERIDRVFATVPWLEAHPFHYLHCRSTDASDHAPLVLVLSTEP
WARPAFRFEAFWPKVEGFLEVVALAWHGAGAQGDMCRRIDAKLRAVANALKSWAATKVGSVRLQLAMARVVISELDVAQE
SRDLSPVELSLRADLKAMTLGLASLQRTIARQKSRCRFLSEGDANTRFFHLQACHRRRKNYLHPFEHEGVLFTTEEAKSX
AVYDYYNAIFGSRFRRLHTIDLERLDLPRLDLSELAAEFTVDEISRAVFDTPQDRAPGPDGFTGRFYRATWSIIKDDICE
AFRALWSQDWRSFYLINAASMVLLRKKEAALGLRDYRPISLMHSFSKLFSKALASRLSPFMDDLVHANQTAFIRGRRIHD
NFRSVQLYCRWLHKGRWPCVLLKIDIAKAFDSVSWTFLLQVLERLGFPLAFRDWVSAMLSSASTKVVVNGRPGRRICHAR
GLRQGDPLSPLLFVLVMEVLSSLIREADRRGLLAPLPGGHFGHRLAVYADDVVLFLAPEASDFLCIKSVLELFAGASGLL
TNVSKCLLSPIRCSDEQIAAVQAVFPCQLSPFPCRYLGAPLSLGRLSRAVEQHLVDAVARRIPTWKAGLITTAGRLTLAQ
STLSAIPVHVSITCVLSPWAIRQIDKRRRAFLWAGTESVAAGKCKVAWISVCSPRIYGGLGLPDLRTLGFALRLRWEWQR
RQPNAPAWSQLPSNDGSIVREMMAASTSVELGDGAHARFWTDRWLPEGRIQXFAPNLFKAIRRRSLSVSVRDAVAERAWV
RHISGALTMHVLVEYVLLWERLETVVLQPGVPDRFVWRWSPDAVYSSSSAYKAFFHGLTLLPGARQLWKASVPPKVKFFA
WLALRGRLWTSDRRHRHGLQGDASCALCDQEDETADHLLLGCVFAREVWHRLLSSFRLPLRPPAAPSSLVDWWLSSRGLL
PRALRRGFDSVVLLVAWSIWKERNRRTFEGLRSSAIDVVRSIVQEGQLWVSAGFRALEAVVAHSLSE
>L1-1_VC_gag#LINE/L1 129-2147  [Volvox carteri]
MANGMAQRKRPRTTAPRTLGNGGTRKPTELPNAGRAKAAPKRINAFNVVTLDGHKYSSVLELETIDLVVHWPARSDRNDL
MAQIYGPLGTAIRSTLGQHFSSTEFKWWGGPRIEKRLLYAAGAESNIAMDFSILVPKGGLAYLFEAYGERIRVSGVQLCP
NEDPIEVELQNKNLHKVLPVQWEIKGVPTKLSVHGVAEFLARAYSTSHQPRTATEFLYLIPTAMADTWQLTLPRDHRGLP
CEMPYEYYGWLGEQHQVGCLKAAKLSPNLEVNPYLMPRCPPPREELRKQQRRQREAAGHHTQQTRPADPSPPMPPMAAFS
GPTRPATYPGPPGQAVEPQVSGLQAAATEGNAAEMVYPPPPPPPPPPPPMPMPLRAPREHNGGKRIGGNGGPALPTGPGS
SRVPPSQPNNSGSGGSKPTAQPGGTDTVGPTGSTGWMLQGKKGKKTPIPDPPAVPREASQETLGTALHRAAGPGKPTAPT
PSASKPAATDMDSEDEHTLAVPDLADEEMVAEQSEDDTPSAQQPLEAVARAPAREPKPRTGQAKQRLQHLSEEERKARNR
AQTAKANEARRASAAAKREAAATSGKSAKPKKQQAKKKQQQATSEAPTGSDIEMQESDYEDATEAQVMEVCSPEEPQEES
LTPTLQLQLPAGTQALASASPPEGDGPTNPPVQ
>L1-1_STu_gag#LINE/L1 1155-2516  [Solanum tuberosum]
MKTWVAKEQGKGNTVKANTRADQQQVYQXNFPRISSNFDKQVPKANTNNARSDRPPVNPPNPPKTDPLAAPAPYTVVQTY
ADRLRHNQAKCDVPITLTAPEITTKQGLPAVLYVKEEVMKDLAAACKYTLIGKFSYTMPKVELIRNNFILQTQLSGGVKI
AHFNSRHVYIDLDNELDYNMVWTKQRMSIAGQVMRIQVWTPNFKPAEETPIVPIWISLPELPWHCYNKEFVSGLLSPIGK
VLYLDSASIKKTRGSQARVKVQVDLTQKRPPYIWMGYIGEDITDGRWQKIEYDNIPDYCFYCKHQGHLESDCTIRQRDED
KKKKEMETVRNKNNKDMDKNPQQPKGHKEGDQKEDTNQQYNQQRDQEQMQYQQEDQWQTQRRRNNNQLQAPRGNTRQAEQ
STKQAGIITIPTQNTYINLDVQESSPSLEVLDKHKGNKSDSRPQTAATKQQGSR
>Polinton-1_PI_atp#DNA/Maverick 13155-13568 [Phytophthora infestans]
MNAIPDFGASIPNCFKSASMGDIPALDMKALFRMVVLGPSFSGKNNLCMFILKHSPHVFAHLTIIAHNPHQELYEYLREK
LEGFITFADPDSPPKVDQVRHTPLSSNKPELVIIDDYSNDKLLQKNIFSHYYTRGGHF
>62733693_Osa_pol#LINE/L1 gi|62733693|gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa]
MRGRKQNKESEMKKVKENLMREIKNIEDEADHRNLSSDEWQKRYFLEGKLNQIYFDEEKYWQGRSGEKWLLEGDANTSFF
HGVANGRKRKSLIRALEEDGRIIEEPAELKAHIYQFYKNLFGAEVAPKIFLSQDMWMHRGRLSQEEREHLIRPFTFEEMD
QALKQMKTDTAPGPDGFTVSFYRAFWPQLRDQFKEMLDLLFEGRLDLWRINYGVISLIPKVKDANTIKAFRPICLLNVCF
KLITKILTNRLTLVAHNVIGESQTAFIPGRFILDGVIILHEVLHEVKKTHQSGIILKLDFEKAYDKVQWSFLFDVLQKKG
FDDKWIKWIKSATIDGRVAININGEIDQYFKTFRGVRQGDPLSPLLFNIVADALSEILLKAKEAGHLEGLVPHLVQGGLT
HLQYADDTILFMTNNDQNVITTKFILHCFEAMSGLKINYQKSEVIVLGENPEETKRVADLFNCKCGKFPMTYLGIPISEG
RLTAADLAIPPDKIEKRLSTWKCGLLSYGGKAILVNSSPMYMMGFYMLPEQTHQRMDSIRSRFFWEGIERKRKYHMVKWE
ALCRPKDFGGLGFLDTRVMNKVLLCKWIFKLESGQKDPCCDLLRRKYMMNGGGFFQSSTEGCSQFWRGLHEVKHWLKLGS
CYDLGDGSATRFWDDVWLGDTPLKIKFPYIYSIVADPGKTVSQLWSSDGWRIDLRRSLGAEELVEWEQLLADLANVHLST
DRDRMRWKLTKSGQFSTKSLYREMTFGGIRDIKMQELWKTPMPLKIKIFVWLMLKGRIQAAHQLKKMKWNGDPLCKLCGA
EEDVDHLMFKCAPARFLWCCFRDVFHWDHVPSSRREFMNILMTMGGDRE
>ATLINE1_1_pol#LINE/L1 1649-5782  1 stopcodon [Arabidopsis]
MMNCLLWNFQGANKPHFRRSIRYIVKKFPTEILAIFETHASGDRAGSICQGLGFDKSFRVDAVGQSGGIWLLWRSEIGEV
TIVQSTDQFIFATVDTGDEVLNLIVVYAAPSISRRSGLWDQLRDVIREAIGPIVIVGDFNSIVRLDERTGGNGQLSPDSL
AFGDWINTSSLIDMGFRGNKFTWKRGKTESNFVAKRLDRVLCCAHSCLKWQEAIVTHLPFLSSDHAPLYVQLSPTVRGDP
RRRPFRFEAAWLSHEGFKELLNVSWNRNLSTPIALQELQKILKKWNKEVFGDIQQRKEKLVVEIKEVQDLLDVTQTDELL
QKEEQLIKEFDIVLEQEETLWYQKSRERWIVLGDRNTTYFHTSTVIRRRRNRIEMLKNNEDQWVSDSRELEXLALDYYSK
LYSLDDVEPVVTKLPPEGFMSLSQADKTELLRCFSAGEVEKAVRCMGKFKAPGPDGYQPVFYQECWEVVGESVVKLVLEF
FETSVLPSRLNDALVVLLPKVGKPEKITQFRPISLCNVLFKIITKTMVERLKPLMTNLIGPAQASFIPGRVSTDNIVLVQ
EAVHSMRRKKGVKGWMLLKLDLEKAYDTIRWDYLEDTLISAGFPEVWVRWIMCCVSGPEMSLLWNGERTDSFKPLRGLRQ
GDPLSPYLFVLCMERLCHLIERSIDNKQWKPISLSQGGPKLSHICFADDLILFAEASVMQIRVIRKVLETFCIASGQKIS
LEKSKIFFSGNVSRDPSKLISEESGIKATNDLGKYLGMPVLHKRINKDTFSELLEKVSSRLSGWKERTLSFAGRMTLTKA
VLSSIPVHTMSSIALPQSTITRLDKASRSFLWGSTAEKRKQHLVSWKKVCLPKKDGGLGIRNAKLMNKALIAKVGWRLLQ
DQSSLWAEVFRKKYKIGDLRDCQWLRKKGTWSSTWRSIVTGLVDVISRGTCWVPGDGHHIRFWRDIWVSGKPLWEDGQGV
VPANLETESVRSLWKDDSGWDISRISPYVSESRCLELRAIVLDHETVARDRISWNESQNGQFSVSSAYNMLSWDDSPRPN
MEKFFNRIWRVKVPERVRAFFWLVVNQGIMTDAERYRRHIGESEICQICKGGVETTLHILRDCPAMSGIWTRIVPQRKRR
AFFDKTLFEWVFDNLHEETPFQESSWSTVFAMAVWWGWKWRCGNIFGEKRKCRDRVQFIKDVAKEVFVANARATVLNGIP
TRVERQIGWVAPSTGWYKVNTDGASRGNPGLATAGGVIRDGAGNWCGGFALNIGRCSAPLAELWGVYYGLYLAWTKALTR
VELEVDSELVVGFLKTGIGDQHPLSFLVRLCHGLLSKDWIVRITRVYREANRLADGLANYAFSLPLGFHSLIDVPDDLEV
ILHEDSLGSTRPRRVRL
>Polinton-1_NVi_px1#DNA/Maverick 9416-8493 R [Nasonia vitripennis]
MADIQRQKNILHQLVKAQNAVKRKYSLLKFGKDKFEQSIGETFKPIVDPLEKLVKTVEKSEVSKRSRAIKKEVKDEMVKN
ESSNDSFDDDTIEPYHESDFETAASEDDDDDLNDTKIRRGVIQEHSNKEVADMYMTMLKHQQDNDKIYGVRKEGSEWMLG
DSSIVFGDRSIKVKDGRYPKTAGLMELLIAKQPKIYDQSDLQNYRSILEATNAHKKQYLSTQPIRVHNSKKYTNIINPMF
SGKSGKGLPRYKIARRDTRMDYVYWDDPNELVDRLRLLIAEQSAGNPSHINEIHSIIEELREGGYIY
>ATLINE1_5_gag#LINE/L1 407-2539  via tfasty with ATLINE1_4_gag, 3 stopcodons.  [Arabidopsis]
MSKRMRPSWYRDSPPKQLPYAFVPEEDDDVVILPQVDNSALLGRLQLSLVGRMFHQGGRSTEALLSFLPNIWDVEGRVRG
VSLGDSRFQFFFESETDLQKVLNKRPCHFSKWSFALERWKSHIGISFPDTMTFWIKTEGIPTEFWEEEVLRNFGASIGAV
RRVDSSKGRLQISVKADVPFRFNKNAQLPNGEVVKVKLFYEKLFXWCTYCRRICHELDQCPLLDENQRVALMAEDQRHSH
LDGSVDGRSXSLSLSQGGTVVPRNGPGERVVSLPEGPQIXKSNPSYGPNRLAANNPPLSKSSSRFGGSRSRRHPHPPSSR
RLPTDRAPPPNRASGSVRRSSPPEGRKRRYGVSFSQEKIVEKPSKGNQDLARVVPSSSLPPSTIPGELRSSPHLSDSQIT
ISDPLLAPSRAKQRTSSPAYVRERPFRLNLSKKHSASEKGKGKVGDPPMSLGDTTPGSSPSAKKSLNFDLDPSSKITTTP
SSVNHVVQVPSPPGKRLSWYEMKVEEDEANARALGAGPDTILAAKFSQVVSFASPVVDVPALPDRQSHSPPLSGGSPQAE
WDKNLNPLSEALNLDWTAEDEAAYHALEPPFTTGEEDVAGKNTLRIESHVSSLERLETQSSISLASTQRPTPSKVLEGAT
ENGGDVENRDQLLSLDGLLSLEIDFVSTLGGPKKGVKKKRAETHSRKGNTTSGKVQSSLGLLVNLASKKIQ
>L1-1_XT_gag#LINE/L1 46-978 [Xenopus (silurana) tropicalis]
MGKHTQRARSEAAARLEKYAHSPSQVPPDENSCQSSVSEPPGPPPDMDPPQPTMGDLLEAIKESRAATTSQLEGIKIDLS
LLRQDLQNLRERTTAVETRVSSLEDTVNPLHNTMPSVKQQIQALMDKTEDLENRLRRSNVRIVGLPEKVEGQHPEAFISK
WLQDTLGTDIFSSIFVVERAHRVPPRPPPPGAPPRPFLLKLLNFRDRDAALRAARLKGPILYNGSTISLYPDFSPAIQKK
RASFTAVKRRLREANISYSILYPAKLRIQDGTTTQFFDSPVDADDWLNRKGQQHPAPIGRRSPPNSPRQH
>L1-5_DR_gag#LINE/L1 3-1124 named MutsuDr2 by Kojima and Fujiwara gi|34392568|dbj|BAC82614.1| gag-like protein [Danio]
GQVGGRKYLKEATVIINVEDVQEVRAEDIIKAVIEKCGHGKILALRPRQGKEYELTMETEELCEQLTDKLMINGVNCEIK
KLHNRDFVVSFMHLPVYLEDKEILEKLDTWGVCPISKIKRRFYPGTDIEDGTRFLKVRFPKEVASLPYSTKIETAEGTQY
FRVMHSHQVKTCRLCMSPEHMLKDCPEFKCYKCEERGHFARDCITVRCPECKNFLNKCECWMEGEEGGGEDQDRQVHEEN
NKREEDNEAIERTMEEEMNNNEKKEGENENEENEVQLSGQDGQWSQMEISDSFKTFLSTVEKEELRKTGQAEGMANDEET
RMENVDKNKVERGFLRRRTFKVKPNLDMAKKKVLTKNRAKYVNRYEVLRGLEEDEEK
>L1-4_Mad_pol#LINE/L1 1890-6041  [Malus x domestica]
MKVLFWNIRGIGNDDSRTELSNICRLHHPDLVCIAEPMVTFNSISAAYWDSLNLSALTFNSRGTLAPNLWLLTSSACADP
LVISISDQQVTVRCTFDHIPSQFTFVYASTSPIKRRDLWADFISLRPQTQVPWMAIGDFNAILGAHEQMGGGRPSQASCA
EFSNMSDTCNFTHLNTSGAAFTWSNGWRSRGRTERRLDRSLCDISWFDSWPHSNCIALPKVVSDHNPLIFSGSRVLSSGH
RPFRFQSMWVQHPSFRETVTHCWRNTVVYGCPMFIILQKLKALKTCLRQWNFSVFGDVHNRVANARHNLSMIQQRISTEG
INNDLFEEEIVAKTTVMESLQMQEAFWKDRARVKWLTKGDRNSSFFHAYARIKSSSSRISCILDGNNLLTDPLAIENHIV
NFYQTLFGSSFTPSGIDEVCEVIQPMVTDSENDLLSALPTDEEIKEAVFSLSASSAPGPDGFPGFFYHHCWDIVGFDVIQ
FVKQFFQSNWLYPNANSNFLVLIPKVEDAISMTHFRPIALANFLFKIIPKILAVRLSHVVQRIISPHQAAFIPGRRITDC
IGLVSECFNVLDKKTRGGNMGVKVDIAKAFDTLDWSFLLRVLTNFGFSTCFIDWVSTILRSAKLSILINGSPHGFFSCSR
GVRQGDPLSPLLFCLAEEALSRGLSRLQLDGLTKPTFAPRGCISPSHVLYADDLFIFCRSDGVTLRNLQGFFDRYSRASG
QFINKAKSTFYLGSTSRHRKAVVESYLGFKEGKAPFVYLGVPIFCGKPKRSHLQALADKAKAKLTGWKGKLLSMAGRVQL
TQSVFQSMLLHSFSVYKWPSSLLRPLSRCARNFIWSGDVTSKKSVTVSWRQICAPKNEGGLGLRDLGSLNTTALLKLGWL
IITTDSPWSIYLRERFKLHGRLYSCSYKRSSIWPGIKSILHILFQNCRWVIGNGSTTSLWVDKWLDKPIVDVVGATEIAX
SLSRTKVSNIIRMGKWVIPSIFSSTFPDLTKEILEMPLPIDEDKDVLIWEVSTSGVFSFSDGYEIVRHRFPVKSWASIIW
RPFIPPRYSILVWKILFNKLPTEDQLQRRGIPLAPICQLCHKNSESIDHLFSSCEFAQRAWRWLATQFGTIIPPTGSLSD
LWLVFLSKRFSPHLRNVWLASGFFLLMAIWKMRNKVKFEGKPPSFSRLCRSTSAWIRQVGALTPGHVRGILDRQLLVSLG
ISPNSCKAPSIVPVLWHPPPFSWVKVNTDGLAKGNPGPAACGGVFRDSAGYFLGGFSLSLGHRTSFYAELHAVILAVELA
HARGWQNLWLESDSSSVISCFASGSFSPPWSLQTRWNNCTLRLQNMVFRCSHIFREGNVVADKLANLGLLSSSLVWHSTP
PIEILPPLHSDFLGMPTYRFVSSS
>L1-5_STu_pol#LINE/L1 1514-4786 via tfasty with L1-5_GM_pol, 6 frameshifts and 1 stopcodon. [Solanum tuberosum]
MKWVFWNVRGMNKRYKQKELKAYLQNNKISIAGLIETRVKEPNMKATIKGIAPGWGIMHNYKQLNGRIWVIWDENWYETT
LISSTAQLLHCQIKERTKGQQIMLTVIYGYNTIEQRKNLWLELNTLAQGITQPWLIAGDFNALLSPQDRLAGAPVSLNEI
RDFAECVKDIGVTELQWKGNYYTWTNKQHGTDRISSRIDRVFGNDEWMEKWGHVTTEYGNPGISDHCPMQLILQTTQHCV
KVNFKFFNVWTEHESFMGLVESIWKQDYGKDSMKKVWCKLMALQPVLRQLNSKEFKYISQQIEKARVELSRIQEQLYSQA
MMNxLIKKKRSLKLEKWSMIEESALRQKSRTKWIQLGDANNKYFSAIIKERTQKKQIRGITSLAGQMLYEPQDIQNEFVL
FYKGLMGTSALTLPAIDVQVMKRGPILSKQQRIKLCADITEEEIYAGLQSIGNDKAPGIDGYNAFFFKYTWKTIKKDIID
VVQSFFKTGKIYKPVNCTLVTLIPKVQNPKTVKEYRPIACCTVLYKIISKVLAKRLHDVIHTVICDSQAGFIPGRKISDN
ILLAHELVKAYTRKNISPRSMLKIDLQKAYDSVEWDYLEQVMNETGFPAMFTQWVMNCVRTVNYSIVVNGQATQSFAAAK
GLRQGDPMSPFLFAIAMEYLSRLLKGLKEEKTFKYHPKCSKLDITHLCFADDLLIFSRGDLNSISALQRCFSQFSQASGL
QANLNKSSIYCGGVQLEVRQQITTTWLQNGKLPFKYLGVPLSTKKLTVIQWYPLIEKIMARINSWTARKLSYAGRTQLVQ
TVLFGVAIYWAQLFIIPAKIIKLIEGLCRSYLWSGVGYVTKKALVAWERVCCPKSAGGMGLINMQVWNKAAVAKLCWDLA
NKEDKLWIRWIHTYYIKGQSIWQDKQASWMIRKVMSAKHIIDQIQLMRGKKGSMIRQIYLYMIGEQQRPDWKCLMFKNAT
RPKAYFTMWLMLNKKLATVDRLAKWGVEVNKTCVLCKNEEETIEHLIVQCQYARKLWERLLTWTQQHSVAPAKWGQFIQW
SIQHGKGKARATQIFKIILAEGVYGVWIERNNRIFEKKRKTEESVAKEIAY
>L1-7_DR_pol#LINE/L1 1666-5299 via tfasty with L1-1_DR_pol, 1 frameshift. [Danio]
INFVSWNVKGLGRPTKLNKVINHLHNLQAKIVFLQETHLNVSDHTMLRRKWVSQSFHSLFTSRARGVAILIHKDIPFNTS
DVLADRNGRYIIVSGSLFNTPVVLANIYAPNFDDDNFFIKFLSLLPNLHSRYLIIGGDFNLCLNPQLDRASLRGTALSKS
AKIINSFLNDYAVTDVWRFLNPLTRGYSFFSYAHQTFSRIDYFLIDNKLLPCVQHCTYNAIVISDHSTLTLGLKFECKNV
QRPLWRLNVRLLTTEDFVQIISSQIDFFVQVNSSLDITHSTLWEAFKAYIRGQIISYVSFERNKYKKSIADLTDQISQLE
NQYVNSPSPNILKEYLLLKADFDTLSTVTAEEILIKSRHAYYECGEKAHRLLAHQLRQSSASHIISTIKANDILLSDHCA
INNAFLEFYQSLYSSEQISDQVDFHNFFQDLSIPRISSEDMKFLDSPISLDEVYNAISAMQSGKSPGPDGLPAEFLKTFS
GQLAPLLLNMYNESFDLTCLPQTLREASISFILKKGKDPQLCSSYRPISLLNADVKILAKIFALRLETLLPKIISSDQTG
FVKNRFSFFNIRRLFNIIYHPMSLSVPEVLISLDAEKAFDRVEWNYLIYALKSFGFGANFISWIRLLYKAPLASVRTNNI
SSAYFQINRGTRQGCPLSPLLFAVAIEPLAIALRQNTNIAGIIRGGQEHKVSLYADDLLLYVSDPSKSLPHILKTFDTFG
RLSGYKLNLQKSEIFPINNAAREFSFTSFPFKISNSFIYLGIHLSNAYFKLFAENLLPLLERVEQDLKRWASLPLSVAGR
INSIKMSFPNFRCYYWASNIRPILHWLYEDPGADALSWIAIESTSCLPSSLAALVYAPLSFPYDKYTKNLMVRSTLKIWK
QIRRQFGWQTISPKSPIHSNPVFSPSIIDKSFASWHARGVKEINDLYHEGIFSSFQQICEKFNIPNKTFFHYLQIRDFVH
KMFPHFPVLPPSSSFDNLLERPTIWKGIISSLYYKIMAPTNTSHSQIKSVWEDDLGITISDEDWESVLYRIHKSSVCAKH
GLLQCKIVHRVHWTNLKLSKHFQHIDPACNRCNFTPATHAHMFWSCIKLNYFWDTIFKIISVFLGISISPCPLIAMFGIL
PTTYNLTKIQSDSIAFIVLLAKRLILLKWKDQKPPTPTQWIRDVLFFVKLEKIRLSRGSSNQFKKTWDPFRKYIQEHVLL
STTDQILVPAN
>L1-6_XT_pol#LINE/L1 1766-5509  L1-6A_XT_pol 90% identical. [Xenopus (silurana) tropicalis]
MATYNIMSWNIRGLNSKYKRSLMWIYLKRHSPSILLLQETHLVGQKTLALKKPWVGWTYHASFSTYSRGVSILVRKNLPF
ELSQIISDHYGRYILIACLLANKPLILANIYMPPPFTTTLLQHIGKKLADLPPAPLCIMGDMNQVMDLTKDRLHSNIQGP
TNLAQWANSLGLSDIWRWKHPLEKAYSCHSLPHKSFSRIDIALATADILPLVEQISYLPQHLSDHSPLLLRLQWLPNTID
RLWRLSPLWLKHPDIASSSREAYIEYWEFNTGTAPQGIVWDASKAATRGSLTALISHERKKSKESITKAEEHLAETQRNH
FHSPTTDTYEEVRRAEAALARESTIITKKALLYKTQHIFDKGDKNSKILAILAKQQQASIAVSRIQTETGNIVHEPYLIA
ETFASYYQKLYSSTATYTAPQLRHFLDSIHIPKLSPTERAWLNAPITLEEITTAIQSLPSNKTPGLDGLPPDWYKALNDL
VTPQLLTTLQAAWDSQSLPPSFAEALIVVIPKAGRDPTLCSSYRPISLINTDAKILAKVLATRLTRAVQDLIHPDQSGFM
PGRATDFNLRRLFTNLQITHTNSGARAVASLDSEKAFDSIEWEYLWEVLRRFGLGARFIQWLKMLYKHPIARVRVNNTVS
PAFSLHRGTRQGCPLSPTLFALAIEPLAITIRNNPNIKGLNFANVTEKVSLFADDILIYLADSGTSLSTLLETIQTFGKY
SGLKVNWDKSQLYHIDPAPVAQAIPNTPLKEVMSFKYLGIQVHTDPNTFRQLNLDPLTDSLSLALKNWEKLPLSLWGRVN
IIKMIYLPKLLYILHNTPYAIPRAVFKKLNTIINPFIWANKPPRISWEKLTSPIGKGGLGLPHFYFYYLTSQIYYLHWCF
APNPYNPNMPLQASILHSLEGLGTYPYRQVSDMTALPDVLKTPHQAWTTALKLLGCPLPYPSPHLPLWKNSLLQQLYDLP
DVIYWARLGIKKLSDLLLQDQFPTLQNLQERIPGQRIQLYRYLQLRHAFQAQFHSLSLTQETTPLEETLYSPTPKKLLSN
LYKMVMESLPPPFNRARQLWHQAIPNLQEDQWEEAIDTAYDYLISIKDRLIQYKSLHQIYITPLKLLKIGKRQNDLCPRC
DTPGANFIHMIWACPPINRFWKDVMGTMAQELGTPRIIDPVVCLLGVIDDILPTNAARIRFRTLMFYAKKTVIMHWMGNN
LPSLNFWRQLVDSALPLIKLTYETRGAMDKFEKVWSDWCNPDPQGQQP
>L1-2_VC_gag#LINE/L1 122-2182  [Volvox carteri]
MSQRRPAVAVSRGNVQNGRQPTSAARPQSIPTKKIKAVSGFYGTNEGLAIYRATLELEPIVVTVRWPAGSDTGDIIAQIY
GPLGLQILATIGQIFRSNQEFNRWGGPRIQKRLLYPMGRERHIVMELSILVPKGGLAALTAARRIVNGRLRVPGVQLTPN
MEPMEVELLVKNQQQAKPIVWEVRGVPVGLSCQGTADFLTRAYRADPSPQDVTEFSLLAPTTMADTWRLELTSNRGLPRE
LPFEYGEPSEACHQKGTLQAIRKTPPEGEPFLMPQPPPRAALAQQQRGDGAATSTRPGHSGQVTGVQGRLTRFLSPMDFD
AIQRDRGHCSGAAEGGPAGVNPLGPPSGPKPRRAVDDGSGLNGVRGGKGDNSGSGPSIPPQGSSEGDAETSWTVMGRKGR
KTPATAAKAAPAETNPFLVLAELRGEEDAPTDVPAPMGGNTPMATQQPGDPAAATTSPAANPNGISSTPTAMAVEGAPAA
AALPGAPEAAALDPTPPPTVNPNGISSAPTATAVEGAPATAALPGAPEAVALDLTPPSAAPDLHKGKACKPRQTQGIKKI
RRPDLTGEARRTFFLAQTAAARAARKQSAELAQRTKDQKRLIHKTSAAERRSELIQSARKQKAKDAEATQGTQASGRELG
TAAAEGDDTIMEAESMGSPSQSLILHLPTASQPGFKDQPTATPTQLC
>L1-2_CPa_gag#LINE/L1 293-1404 1 frameshift (somewhere between bp 892 and 912) [Carica papaya]
MKAIFELTXTPLKNPFLKHSDHISPVFCSHQVQSVSSHISLCCPNCKHTYRFIIPLEEKKSYAEALKPHNANPKRVMTTV
PDPXRIPKNPVFEIQKPKSKSGKKTQKRVTSTHKKTHHPKKPRFTWAEKGKWTNEVGPSNMNKSKASPTKMHQKVKWAWR
EKKKDPHPNPNPISIIISEPQTKNENSVLQNRALESPVETWQLMSXCSNSWSGAQQISCSPVMSLEEELLSGTGYKLVVH
HSENECLTSGFEDSGNDRVLSDVIESIDALLKDKHRYDPQLFSDWITQNIFCISKHLGASFFGYEMEAKSLFIELEKKLE
ICKSKPILLXSSKKKQTESGSRELKRLQTSINYEGRNKKSKESEAVFXQPK
>L1-3_PTr_pol#LINE/L1 1298-5042 via tfasty with BNR1, 2 frameshifts. [Populus trichocarpa]
MQNRTIGTGMSSRLLCICAWFYVPFMILSWNVCGLGSSSKRKAISKYIKDFNVIVCFIIETKLSCSDSMVSSLWHGQNIK
WFSIEAQGRSGGLLAMWDEDLFRVDSIEYAGSWISLFGSFVDDAFDCVITGYYGAGSRAERAASWLELTELKHAFSDYPW
FLIGDFNETLSKTDRSSGLLDRRGASEFQTFIDGCELVEYPLVNHRFTWFRGGSMSRLDRAFAHTQCLSHFSSLKLIRLD
HGLSDHCPLIVGKEQVNWGWKPFKCLDCWLMAPSFQNTLKVFWQEIVHDIPGDFQVIRRISALRLKLGQWNKTEFGNQDW
ALQNIQSSIRLLEDQAESGKISDSERKRLYELKGMQWKLCRYVESIWRQKARQSWLKLGDRNTRFFHISAKVRGCKNYIR
QIIYNGKILSSPTEIKEGAKAYFSNIYSESLTSRPTMGNADFMKLSENQAAWLEREVTIEEVHLAIFSSEGSKAPGPDGF
NFNFYKKFWELMKHDLFTMVLEFFRRGYLPKGINTSYIALIPKVAGSSSFNDYRPISLLNGLYKIIAKILATRLKEVMQS
VVSPSQSAFIAGRNILDSVLIANEMLDSMKSRSCQGFLLKLDFRKAFDTVSWSYLNDVMGYMNFGARWRKWIMACVSTAR
LSVLINGSPTSEFTASCGLRQGDPLSPFLFCLAAEGISVLISRSLKMGALYGVXSAGTKYIHHLQFADDTLLFLPNDLQC
LLNTKRMLRWFSLCSGLNVNFHKSSLVGVGVDGIYAEGISGVLRCRCDTLPIKYLGLPLGANPKRISTWKPVLSQIRGRL
NSWKGRLLSMAGRAILIKSVISAIPLYYMSIFCIPKAVARKITAMQSRFLWGGSIDNRKIPQAAWETVAKEKDRGGLGVG
TISAKNKALLFKWIWKLGSNDKASWADFIKEKYRPTFINGVPQFKKKLSGIWRGISSTITSKDLDSTLIRAGCKLKMGNG
NHVNFWSDTWLTGFCLANSYPALFRLSSSKAGIVSQMGYWIEDTWYWNLKWIRPLRTSENLMFQRLMSDLNLAVIHRLKE
DRLIWEWGKDGGYTVNSCMLALERIRYAGSKTYVTDVWKSICPPKTEMTLWLALNEGLCTRAFLVKRHILSPQEDWCPFC
EQHSETVSHILMHCPVVWKLWNKIVAWRGLSWVMPYALDDLQCQWLGLLQGNHCKFERSVWGGFMFSIVWTIWNARNNLI
FEEKKPIWEDILWHLFYFAAGWIRNLNSSFWYTGADLYRNHECISAWSA
>L1-4_Cis_gag#LINE/L1  472-1845 [Ciona savignyi]
MNSKEIPDIDVELPRTIVIKLTGNVEHMSISSFMEIFAEDGPLAYLAPLIDGVIMESFRECEFLVTLKDDGRDHPISLAQ
QTIDSVNEKTDMFIGPKGSAMTFMAMLPQPPVETVTLHPIPCTITERHLKLLVNKYKWGTYKSYNFGNHRNFPTIKNGWL
SINLMDXNINNIPKVIKIGGKWITVTKPGESHLELCRYCKERGHLQSKCPKKGYCAFCKTHGHITRRCRSAIPPPFPQGX
PSPPNPTLGDWILPKRTFKNPLQPTLFQDNNILPTTSNQFYVLDTPSHEENSDMTXXENINQEVLPPKKVTKSPRPKSTP
RKLKANNIGAPNQNSTMDSFMNKSNTDPRETSQYKTPDETKTKQQXTKIDLDDNVKSDIDSSPPATTDSNQSSKDVSPIE
VIKKAHKKLVYGLANPILKYTDNNPPTIRRSILDRKKDLLGTTMSPNKRRREENEPRT
>L1-3_VC_pol#LINE/L1 2464-7203  [Volvox carteri]
MPSRGTRRSQQQNAVQGHPLRIATHNMHGLLATHGNRLQAAVRQWAEMRLDVVCLQETHHTNIQHQCLFERDLRQAAMRV
HSQGWRVAAHSWSSSTHTAGVLILVRQGLAAALEPPPNTTRQACMQGRFTECVLRWGGHRLHICNVYLPTGSSTVAADAR
RLLFSKVLAATSTKAAAPDSDTTLIWAGDFNFVENPELDSSAGPEGRRGDGPIADMRRQAGPTMVDTHRHFHPTRRDFTH
LYRAPTPGGSRIDRIYINQPKLTYVCHTSVTFHTPSDHRIATLHLLPCRSEERGPGVRRVRLAFTAHEDLSSSMDTWIRS
QCMEAPSAEDNPAGLIAWWPGFKRRLATLAHRLNKAAQQRRRRPGTRAREAIAAVQRAQQAVDAAPTAPQPLQQLADAQA
ALARAHQEDGSMAAKEARAHWLRAGERTGPALTAFLKAQAAEQQPAPVALQAHSGRLVTNPAQLPQVVADYWAEISRAPD
FISPSARQEVLAQLSAANISLPANADEQLGSKTITAAELRVALVKSQPGKAPGWDGIPADLYRKFWSTIGNTMAGLFTAI
GATGQVPTGFLEGIITVLYKKGDPKQPGNYRPITLLCADYRLLAKVLANRLGPALGRIITPEQSAFLPKRLIGASVMFLR
HLSHLLRKQNRRGLLAFLDFAKAYDTVDRDFLLAAMEAMGAGPQLCSWVRLLLSNTQARAMVNGFKSRLVGMEAGVRQGC
PLAPLLYLFIAQALLCWLRSRDVGVKLRPNDQDRVTACQFADDTEVALEGEESVPSFLEAMETFARASGQRLNVEKVELL
RVGAENQQQQQQPQPAGRQQLQQPLHQQPQQETIGGLKVVTTATALNLPVDNRPTPPQPEWPKMLAGAYKRMQRLARFPL
SAFGRATATSAYGLQTVTWHMEHGGPPPDSTLDHIERLTARLVDRQQGPEDPGQRLTGVPSSLLVGHPSTGGFGLLPLRQ
HIHARHAVWAVRFIAQALPAAGCEGRGAGGEVTGGAGGDEEVAAATNSEARGLHPWVRTLSAYLELTHPALQPWALTTAR
ATGPWLGSSDLPADISRIVGALGHLPPLEDIGRTPLEPGDWCWAAALWGNPLLPNATNAASTEGPSRRPGLEAYHAALTP
CRKLRTVGDLVRVWEAVNTSQATTLQGAAWHSWAREHLDPATDPAQLQDKDAALAALGALHSDISPAWLAAAHAVEIRLR
QQQQVEEEGPQQQPPAPAATLPDCAQVMAMIIGRLGWRLPGATDAVPLRRLTVSLATQLQNGHVDERRIRLMTDFVHEAL
NTPEAQAQPDNSAEVSRFQATLARLWHGVRWENENKETMWRLAVDGVPLPGNTHLARVPTEPCGCGTYGGAAGRPCPPRL
HHFWECPVARAVREQIDRHLPHTQTTVGATTTRQQLWLAQAPPGCEQGPWDVIALAALSAMEVGRCCLRAATRRQGRMGA
TATAGQQQQQQQRQQQRQMMGQPQQQRSRQRAITDFFTPAGGAMQQEGPTLNAPADDGPTQEAGAGGGEAVAAAATAGAT
GASPLARARARAVADFWARLRSFAMLETPRHGWDRVGPQHPILAVVEERMRCAAPVEITA
>L1_Mur3_gag#LINE/L1 972-2012 [Muridae]
MPRRQRKNTINNSQDNMSPLEPSNPTTAGPEXCNIAEAQDKDLKIAFMNMIEVLKEEMNKSLKEIYENTNKQWKEMNKTV
QDLKVEIESIKKTQTEGNLEMKNLGTRTGTSEASLTNRIQEMEERISGIEDTIEEMDTSVKENVKSKKKILAQNIQEIWD
TMKRPNLRIIGIEEGEETQVKGTENIFNKIIEENFPNLKKEMPIKVQEAYRTPNRLDQKRKSPRHIIIKTLNVQNKERIL
KAAREKDQVTYKGRPIRITPDFSMETLKARRAWTDVLQTLRDHRCQPRLLYPAKLSITIDGENKTFHDKTKFKQYLSTNP
ALQKALEGKLQPKEVNNHTQENTRNK
>L1_Mur1_pol#LINE/L1 L1_Mur1_orf2_900-4684 [Muridae]
LSLISLNINGLNSPIKRHKLTDWIRKQDPAFCCIQETHLNNKDRHYLRVKGWKKVFQANGPKKQAGVAILISNKIDFQPK
VIKHDEEGHFIFIKGKIHQEKVSILNIYAPNARAPTFIKETLLKLKTHIEPHTIIVGDFNTPLSPMDRSLKQKLNRDTVK
LIEVMNQMDLTDIYRTFHPKTKEYTFFSAPHGTFSKIDHIIGHKTTLNRYKKIEIIPCTLSDHHGLKLVFNNSKSNRKPT
YTWKLNNSLLNDNLVRDEIKKEIKDFLEFNENVDTSYPNLWDTMKAVLRGKFIALSALVKKLERSYTSNLTAHLRALEQK
EANSPKRSRRQEIVKLRAEINQIETKRTIQRISKTKSWFFERINKIDKPLAKLTKGPRGSIQINKIRNEKGDITTETEEI
QKIIRSYYKSLYSTKLENLDEMDGFLDRYHIPKLNQEQVNFLNRPISHKEIEEVIKNLPTKKSPGPDGFSSEFYQTFKED
LIPIFLKLFHKIETEGTLPNSFYEATITLIPKPHKDPTKKENFRPISLMNIDAKILNKILANRIQEHIKTIIHHDQVGFI
PGMQGWFNIRKSINVIHHINKLKEKNHMIISLDAEKAFDKIQHPFMLKVLERSGIQGPYLNIIKAIYCKPTANIKLNGEI
LEAIPLKSGTRQGCPLSPYLFNIVLEVLARTIRQQKEIKGIQIGKEELKVSLFADDMIVYISDPKNSTRELLQLINNFSK
VAGYKINSNKSVAFLYTNDKQAEKEIRETTPFTIATDNIKYLGVTLTKQVKDLYDKNFKSLKKEIEEDLRKWRDLPCSWI
GRINIVKMAILPKAIYRFNAIPIKIPTQFFKDMERAILKFIWKGKKPRIAKTILNNKRTAGGITIPDLKLYYRAIVIKTA
WYWYRDRQVDQWNRIEDPEIKPHTYAHLIFDKEAKNIQWKKESIFNKWCWSNWLSVCRKMKIDPYLSPCTKLKSKWIKDL
NIKPDTLNLIEEKVGKSLELIGTGGNFLNRTPMAHALRSRIDKWDLMKLESFCKAKDIVNKTNRQPTDWEKIFTNPTSDR
GLISKIYKELKKLTTKKPNNPIKKWGIELNREFTTEESRMAEKHLKKCSKSLVIREMQIKTTLRFHLTPVRMAKIKTSGD
NTCWRGCGERGTLLHCWWDCKLVQPLWKSIWRFLRKLEIDLPKDPAIPLLGIYPKDAPPCHRGTCSTMFIAALFVIARSW
KQPRCPTTEEWIQKMWFIYTMEYYSAIKNEDILSFAGKWMELENIILSEVTQTQKDMHGM
>Polinton-1_Crp_1p#DNA/Maverick 3769..6393[Crocodylidae]
MVRVRRQEWSVARFGGTRYTEEFRFVNLERVPLHVAYEAITRGVEEIVAELRQRFTGNDYAQLRIQADSMANCLYSRAIN
LNNLTPELFLEWFSNLLQSQREILLNSTFRLVVVVVKGRGGGSRRVISSIPYSQIITKKRKYLIDLNTYDTNLCFAGSLL
AVTKRRGARDVELLDGAKELHRKLGMSIYQKVMLHQVPLFEDLEQVNIHIVMHKEKTGWSLFKTQDAPRYPDTCFLLLHG
EHYYGILDVKKVFGMRNYCDLCQTLYSHSHTCRFRCRLCLSPNCSENMGRTQRCPNCKLFCRSKECLERHVALASEKQIE
CLTKTLCDECKSYVDKKHECKGRQCKQCYGKITDVNKHWCFMRQIKEPEEGEGYIFYDFECVQETGMHVPNYIFAMELKT
GGKKPQKAAGKNPQKACKAKPKKPESTWEFKGEECLSDFIKVFMDKKFKDYTFIAHNAKGYDGYFIVSQLLKEKMGVKLI
TQGGKLMCIEVTRLGIRFIDSLNFLPMKLSRLPQAMGFEGCKGYFPHFFNTAENQNYVGPLPKMEYYGIENMMSGEKGQF
LEWYQNNRDKTFDMQKELAYYCQQDVXILKEACCLYRDEIMKMTRQVDRVKVDGELQNVVRCIDPFQYITLASVCMAMYR
FMFLEPQTIALLPPDNYHRQKKRFSTPSIQWLMYISEKENIQIRHALQGGEFQVGPYFLDGYANIDGEPTAFEFNGCFFH
GCVTCYNEKDQNPLTGTTFGFLNYQALHKTDYLKREGFTVRTIWEHEWRALLETDGELADFLNRTPLPSPLVPRDALFGG
RTNAICLYYQTKPGEQIHYYDFTSLYPFINKTKEYPAGHPEIIHDNFQPLSSYFGIARVKLYPPRNLFFLCYPPG
>L1_TD_gag#LINE/L1 952-3998 via tfasty with gi|50930947|ref|XP_, 7 frameshifts and 5 stopcodons.  [Triticum turgidum subsp. durum]
MGEEDLTCRRHGWSRSAATQARATCRCRPGYWRSWSWRSADQHGGRGRPCSTVCAAAGGVGRGASASGQANTTSAAGAVR
RPAQGGGGERGVALHPRPTATGPVASGVQPRAGTARGTQPSERQGAVASKTNMHQPDDMAQPPTAKVLALGRGRGRQGRD
GYTGYSRDSQNYNRYGQWGDDVYDAYGEGMHRGSSSGGGRGYNRYNPDNSGHFQGPPGNFVEGVARPKDRFRGGYRRGGR
GRRPPPPRQYPPPLPPAAEMPSEEELEHAAKGVGDTPTLPAVALDTVRALAAVNVPMTTGGVKSKDGTSDKGPDKAEGEK
LSKWAIKKKKLPCYRCGEPGHFVAELCDYCLHSQHVTRECPLLSGAKPGINIFGVYXKELMFFETPEVDLSTQMIESSFP
AVIRITNGXLTEAQIVRQLREIVPGNYQWHLEQLEGQSYKVDFPTKEDQMHVLKWGLCKVTNTNIVIAFDEWKQEDPXGY
YLLEKVWVRFYGVPPKYVKHFLIAWSLGGLIGKIEKVDMPFTRAQNAARLLVSVVSIEHIPDVVRWTHAGVTYLLELKIE
DTAVSEAGDGTQDMDTTEGGGAPGDQEKGPDDTMPECGQWACYNSLITVDSSIKEAPPSTTPMNTLFFGSFVSRSAPSRL
WSTRVDRXSDRAXASTTVESSRQCATMEPTSGATVGSVGMATVLGDLMGRRSTTPRYHCLTFRQREGRLERRSTTLFPIP
RLRSSWGSDPGRSPVVVTASTGGAPSRAAKVRRLPRLIRGDEICEQAAPRSFVPLSPTPAVHSTTPLPPSPTIREGRGSP
DRTPRERTTEELITFGGITDPVSAGRRVSNQIQGQPDADDFQLARAKRAAMLRHAETTAGTSFDISCSILHFSENELVDK
ANDLGISLGSNDTEVVKSVNDLLDMEAKRASEIIRNLASIQPMNDNDMNSLGINDLANICNNLLPSVETKDEEEVENTDT
VAPLLTEEAVSVIDNNIVPQGVGEKPKRPWKRKIYPTSAVRRSARVKLKKKFHDDL
>L1_Mur3_pol#LINE/L1 L1_Mur3 2078-5863 via tfasty with L1MA6_pol, 1 stopcodon.  [Muridae]
INKHCSLISLNINGLNSPIKRHRLTEWMXKQDPSFCCIQETHLNIKDRHHLRVKGWKKIFQANGPKKQAGVAILISDKID
FKPKLIRRDREGHYILIKGKIHQEDIAILNIYAPNTRAPKFIKETLLQLKSHIDPHTLIVGDFNTPLSPIDRSSRQKLNR
EMLELTDVINQMDLTDIYRTFHPNTKEYTFFSAPHGTFSKIDHILGHKASLNRYKKIEITPCILSDHHGLKLDINNNRKL
TNSWKLNNSLLNEKWVKTEIKKEIKDFLELNENEYTTYPNLWDTMKAVLRGKFIALSAYIKKXERSHTSNLTAHLKALEQ
KEEITPKRSRRQEIIKLRAEINKIETNKTIQRINETKSWFFEKINKIDKPLSKLTKRQRENIQINKIRNEKGDITTDTEE
IQRIIRTYFKNLYSTKLENLKEMDNFLDTYHLPKLNQDQISNLNRPITPSEIEAVIKSLPTKKSPGPDGFSAEFYQTFKE
ELMPILLKLFHKIETEGTLPNLFYEATVTLIPKPHKDPTKKENYRPISLMNIDAKILNKILANRIQEHIKKIIHHDQVGF
IPEMQGWFNIXKSINVIHHINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERLGIQGTYLNIIKAVYSKPIANINLNGE
KLKAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQLKEIKGIQIGKEEVKVSLFADDMIVYISDPKNSTRKLLQLINTFS
KVAGYKINSQKSVALLYTNDKRTEKEIRETTPFTIASNNIKYLGVTLTKQVKDLYDKNFKXLKKEIEEDIRRWKDLPCSW
IGRINIVKMAILPKAIYRFNAIPIKIPTQFFTDLERTIFSFIWKHKKPRIAKTILNNKRTAGGITIPDLKLYYRAIVIKT
AWYWHKNRHVDQWNRIEDPDINPHTYGHLIFDKEARNTHWKKDSIFNKWCWSNWMAACRRIQIDPYLSPCTKLNSKWIKD
LNIKPDTLNLIEEKVGNSLELIGTGKDFLNRTPLAQALRSTINKWDLMKLKSFCMAKDTIIRTKRQPTEWEKIFTNYTSD
RGLISKIYKELKKLDIKKTNNPIXKWGTDLNREFSKEETQMAEKHLKKCSTSLAIREMQIKTTLRFHLTPVRMAKINKTS
DSSCWRGCGVRGTLIHCWWECKLVQPLWKSVWWFLRKMGIDLPQDPAIPLLGIYPKDASSYHRDTCSTMFIAALFIIARS
WKQPRCPSTEEWIKKMWYIYTMXYYSAIKXNXIMKFTGKWMELEKIILSEVTQTQKDKYGMY
>L1_Ele3_gag#LINE/L1 129-1198 via tfasty with L1-10_CQ_gag, 1 frameshift. [Aedes aegypti]
MRRENTFRIDYSSFPVKPAFEKVHGFCRTVLGLNKEDVKRLQCSRGEQCAFVKVGDLALAQKIVEEHDGRHEVEIDGKKH
KLRITIEDGSVEVKVHDLPEDVTKEKIVEFLRAFGEVVSIHELTWGESYEFAGVPLGIWSARMLLHRNIDSWVTIDGQQA
YVVYKGQVISCKHCKEQAHSGISCVQNKKLLVQKSYANVAKQSGNRPPPKKSSGVKPPSTKPVGPTAPSLTSSAAFPELP
KPPSRTEQSAPVTKANSQSDKIDLTASPSPQQQRAHGSSSSHRSTQQATEATQPNVAVVDLFKKPIHALRSHSKNGNGNE
TDESSASTSSRRSRGRPPGKKPRREDDDDEQDEDSQP
>L1_Carn2_pol#LINE/L1 L1_Carn2_2119-5937 via tfasty with L1MA6_pol, 2 frameshifts.  [Carnivora]
MAINTYLSIITLNVNGLNAPIKRHRVSEWIKKQDPSICCLQETHFRPKDTCRLKVRGWRNIYHANGCQKKAGVAILISDK
LDFKTKTVTRDKEGHYIIIKGTIQQEDITIVNIYAPNMGAPKYIKQLITNIKELIDNNTIIVGDFNTPLTSMDRSSKQKI
NKETMALNDTLDQMDLTDIFRTFHPKTAEYTFFSSAHGTFSRIDHILGHKTGLNKYKKIEVIPCTFSDHNAMKLEVNHRK
KSGKTTNTWRLNNMLLNNEWVNQEIKEEIKKYMETNENENTMVQNLWDAAKAVLRGKYIAIQAYLKKQEKSQINNLTLHL
KELEKEQQTKPKASRRKEIIKIRAEINDIETKKTIEQINETRSWFFEKINKIDKPLARLIKKKRERTQINKITNERGEIT
TNTTEIRIIREYYEKLYANKLDNLEEMDKFLETYKLPKLKQEEIENLNRLITSKEIESVIKKLPTNKSPGPDGFTGEFYQ
TFKEELIPILLKLFQKIEKEGKLPNSFYEASITLIPKPDKDXTKKENYRPISLMNMDAKILNKILANRIQQYIKKIIHHD
QVGFIPGLQGWFNIRKSINVIHHINKRKDKNHMIISIDAEKAFDKVQHPFMIKTLNKVGLEGTYLNIIKAIYEKPTANII
LNGEKLRAFPLWSGTRQGCPLSPLLFNIVLEVLATAIRQQKEIKGIQIGKEEXKLSLFADDMILYIENPKDSTKKLLELI
HEFSKVAGYKINVQKSVAFLYTNNEAAEREIKESIPFTIAPKTIRYLGINLTKEVKDLYSENYKTLMKEIEDDTKKWKDI
PCSWIGRTNIVKMSILPKAIYTFNAIPIKIPTAFFTELEQTILKFVWNHKRPRIAKATLKKKSKAGGITIPDFKLYYKAV
VIKTVWYWHKNRHIDQWNRIENPEMNPQLYGQLIFDKAGKNIQWEKDSLFNKWCWENWTATCKRMKLDHFLTPYTKINSK
WIKDLNVRPETIKILEENTGSNLFDIGHSNFFLDMSPEARETKAKINYWDFIKIKSFCTAKETINKTKRQPTEWEKIFAN
DISDKGLVSKIYKELIKLNTQKTNNPIKKWAEDMNRHFSKEDIQMANRHMKRCSTSXIIREMQIKTTMRYHLTPVRMAKI
NNTRNNRCWRGCGERGTLLHCWWECKLVQPLWKTVWRFLKKLKIELPYDPAIALLGIYPKNTKILIQRDTCTPMFIAALS
TIAKLWKQPKCPSTDEWIKKMWYIYTMEYYSAIKKNEILPFATTWMELESIMLSEISQSEKDKYHMISLICGI
>L1_Ele5_pol#LINE/L1 1597-4791  [Aedes aegypti]
MSRRDTLSYNIGSINTNTVSSDNKIAALRSFVRLLDFDIVLLQEVECVSLCIPGYNIIFNVDESRRGTAIALKSHIPFSN
VQRSLNSRILTVKIGDSLTICNIYAHSGSQNYSARENLFKEQLPFYLQAASEHVILGGDFNCVISNKDATGTNNQSPALK
QLVENMQLNDTWDCLKRNVIDYSFVRSNSASRIDRIYVSRSLVPHLHSSELFATSFSDHKAYKIRCGLPNLGKPFGRGYW
SMRAHVLNEENLAEFEQKWTRWLREKRNFNSWMSWWTEYAKPKIRSFFRWKTNEAFREFHATNEMLYRQLRNAYDHLYQN
PNGVAEVNKIKAKMLQVQSNFSKAYERLNDRYVCGEKVSSFQIGDRYRRKTTISSIRHEDRCITTGTEIENHVHDFFRNL
YSEEQLHSFEYSPTNRIIPADSNSNNAMMHEITTTELFFAIKSSASRKSPGSDGIPKEFYLKAFEIIHPQLNLIINEALQ
GNVPENFVEGIVVLCKKKTNDQTIKAYRPISLLNYDYKLLSRILKERLEKVMVEQNLLNASQKCSNSDRTIFEAVHAIKD
RIAELNCRRRHGKLISFDFDHAFDRVNHDFLKVVMRNIHLNGNFVQLLGKIMSSSKSRLLINGNLTPSFPIQRSVRQGDP
LSMHLFVLYLHPLLEKLRAICNGPMDLVVAYADDISIIITDERKLAIIKQAFVNFGRCSGSLLNLNKTFTVNLGPHRDAD
DINWPMAKDSIKILGVTFFNSQKQLIDYNWADVIRKTSRLMWMYKARNLTLHQKIIVLNTFITSRLWFLASIISVPNHAV
ARITSHIGSFIWERFPTRVPIEQLTLPKNMGGLNLHLPMHKCKSLLVTRFLKEIRETPFASSLAQHLENPPNLAAIPALY
PCLKSLSKVLPYIPRRIRENPDAALLHNHFREKLNKPKVMQENTNITWRRVWQNIRIKGLTSIEQSMYYLLVNGKIPHAK
LLHRQNRVANPFCQLCPNTEEDLEHKFSSCPKTSALWNHLQSKLETTVGRRMTFTSLRFPELKNMNRTCRYQALKMFISY
VKYVLDANDQLSVEALDFILNCVFV
>L1_Mdo3_gag#LINE/L1 573-1580 [Monodelphis]
MANCAQEQQPPSTKKNKKKGLTLEXFYGGKTQATEEIEEEIQINAPKPSKKNGNCPQALEEFKLELIKKMEAFWQEKWEI
VQRENNSLKDKNSQLEKQLEATKSRIDQTEKENQSLKTRIRQLEXNDLAKQQELIKQSQKTDKIEENIKYLTEKMTDQEN
RARRDNLRIIGLPEKPEINRNLDIILQEIIQENCPDVLEQGGKIDIERVHRTPSTLNPQKTTPRNVIAKFXSFQAKEKIL
QEAKKRQFRYQGAPIRITQDLAASTLKDRKAWNTIFRKARELGLQPRITYPSKLTIYFQGKVWAFNKIEDFQVFVKKRPE
LSGKFDIQTQRSRET
>L1_Fc_pol#LINE/L1 1878-5384 1 frameshift [Felis]
MTLNPYLSIITLNVNGLNAPTKRHRVSEWIKKQDPSICCLQETHFRPEDTFRLKVRGWRTIYHATGSQKKAGLAILRSDK
LDFKLKAVTRDEEGHYITITGSIHQEELTIINVYAPNTGAPKYVKLLITNISNLIDKNVVIAGDFNTPLTTMDRSSRHTV
NKETRALNDTLDQMDLTDIFRTLHPKATEYTFFSSAHGTFSKIDHILGHKTALHKYKRIEIIPCILSDHNAMKLEINHRK
KSGKPPKAWRLKNTLLKNEWVNQAIREEIKKYMETNENENTTIQTLWDAAKAVLRGKYIAIQAYLKKQEKSPIQNLTAHL
KEIEAEQQRQPKPSRRREIIKIRAEINNIESKKTVEQINETKSWFFEKINKIDKPLARLLKKKREMTQIDKIMNENGIIT
TNPSEIQAIIREYYEKLYANKLDNLEEMDKFLSTHTLPKLNQEEIESLNRPITSEEIESVIKNLPTNKSPGPDGFPGEFY
QTFKAEIIPILLKLFQKIEREGKLPDSFYEASITLIPKPDRDPVKKENYRPISLMNMDAKILNKILANRIQQHIKRIIHH
DQVGFIPGMQGWFNIRKSINVIHHINKRKDKNHMILSIDAEKAFDKIQHPFLIKTLEKVGIEGTYLNIIKAIYEKPTANI
ILNGEKLRAFSLRSGTRQGCPLSPLLFNIVLEVLASAIRQQKEIKGIKIGKDEVKLSLFADDMILYMENPIDSTKSLLEL
IHEFSKVAGYKINVQKSVAFLYTNXEATERQIKKLIPFTIAPRSIKYLGINLTKDVXDLYAENYRKLMKEIEEDIKKWKT
IPCSWIGRINIVKMSILAKAIYTFNAIPIKIAPAFFSKLEQAILKFIWNHKRPRIAKVILKKKTKAGGITIPDFSLYYKA
VIIKTAWYWHKNRHIDQWNRIETPELDPQTYGQLIFDKAGKNIQWKKDSLFNKWCWENWTATCRRLKLDHFLTPFTKINS
KWIKDLNVRQETIKTLEEKAGKDLSDLSRSNFLLDTSPKARELKAKMNYWDLMKIKSFCTAKETTNKTKRQPTEWEKIFA
NDISDKGLVSKIYKELTKLHTRKTNNPVKKWAENMNRHFSKEDIRMANRHMKRCSTSLLIREIQIKTTLRYHLTPVRVAK
MNKSGDYRCWRGCGETGTLLHCWWECKLVQPLWKTVWRFLKKLKIDLP
>L1MA6_gag#LINE/L1  L1M2_5end_1641-2645 [Eutheria]
MRRYQCKDTRNMKKQGNMTPPKEHNNSPATDSNEKEIYEIPEKEFKIMILKKLSEIQENTEKQYKEIRKTIQDMNEKFTK
EIDIIKKNQTEILELKNSXNEIKNTFESFNNRLDQAEERISELEDRSFEITQSDKNKKKRIKKNEQSLRDIWDTIKRPNI
RILGVPEGEEKAKGIENLFNEIIAENFPSLARDLDIQIQEAQRSPNRYNPKRSSPXHIIVKLSKVKDKERILKTAREKHL
VTYKGTPIRLTADFSAETLQARREWDDIFKVLKEKKNCQPRILYPAKLSFINEGEIKSFPDKQKLREFITTRPALQEMLK
GVLHLEAKGRYLPS
>LINE1-38_ZM_pol#LINE/L1 2687-6217 [Zea mays]
LQPAVVXYXNCFPMDPSLXLFWNVRGLNSAARQDVVRSLVDSXRXDVVCLQETKLVNCDRRTVLSMLGADFDNNFXCLPS
VGASGGVLITWRAKLGRIVASRVDSFSVSVKFNPADGXAWWLTCVYGPQGHDRKIAFINELRXIRAACXGPWLLGGDFNL
IFRDEDKNNXNINRXMMGRFRRCINDLSIKDIDLLGRKYTWSGANNVQVRLDRVFCSSDWEEKFPNYLLQSSASEDSDHC
PLLLGLKDNHTGKXRFHFESFWPRFDGFLEAVXNAWGSVQQSSCPLKTLSLKFKATTKGLQSWSDRKVGNFKLQLELARE
ILLQLEVAKESRILNVLETWLLGRLKKCSLALASLIRSMARTRSRIAWLKDGDANTXLFXSWSRYRKRKNFIAKIXDGEQ
LVTSHSDKAEVLRSFYSDXIGTGQQRSRTVNLDTLXXQHIDLQGLEQPXSEEEVWNTIKQLPPDKAPGPDGFTGRFYKAC
WSIIKKDIMAAIXXVWNKDFRNFRYLNTAFITLLPKKEDAILAKDFRPISLIHSFAKLITKXMANRLSGYMDKLISXNQS
AFIKGRFIQDNFMLVQQTARLLHAQKQPRILLKLDISKAFDSVSWSFXLEVLEKVGFGPIWRDVISGLLMTSSTQIXLNG
VPGEYIQHXRGLRQGDSLSPLLFIIVMDVLNGLIVKAADEGXLQPLSTRSIQHRISLYADDVVIFLRPAASDLXLVTRIL
ELFGDASGLKTNVQKSSXAPIHCSPVDMEMVTQIFPCKVETXPLKYLGLPLSLRKLSKEQLQPLIDRLADLLPNWXADLM
TRAGRAIQVQHVLTATVIYHAMALDLPKWAIKAIDKIRRGFXWKGRKDVLGGHCLVAWGKVTRPKELGGLGISDLQRLNW
ALRVRWLWLEKTDPSKSWADLPLQSSSTLKSILSTALTTEVGDGRNTLFWRDRWLMGLSVEDLTPHIFALVPARIANRRT
VAEGIVEMAWIRDLRGTITWAVLSDFLTLSEVIADFSLSDGVPDKHIWKFSPTGQYSAKSAYDMLFLGSTSFGAFERVWE
SWAPSKCRFFLWLVXHNRCWTADRLAKRGLPHPSVCPLCDQEEETIQHLLISCVFARQFWYFLLSRSGLPNLSPDNAFCS
LDDWWSRAVEKIPRDLQSGFNSIVILGAWSLWRHRNDCVFNGQIAEPCEYSHPRWR
>LINE1-19_SBi_pol#LINE/L1 3360-7073  [Sorghum bicolor]
MPSELLCYSCMPGVADQSSVICLQLCNVPTGCLSCVLYPSMVAQSIDLLSWNVRGLNQQARRDIVHQIIAATSCNIACLQ
ETKLSQICQYDASYLGGYRLRQYAYKPASGPSQTRGGIIILWSDCRVSCTDITIGEFHVSMNVQLKDLNTSFLLTVVYGP
SRRRADKLRFLDELKALKPAPSTRWLITGDFNLIYRAADKNNRNLSPRLMRHFREALDECDLAEISLQNRKFTWSNERXQ
PTMSRLDRFFCNADWDATFSTHTLNALSTSLSDHCPLLLSDQSGPRTPSSFKFENFWIRLPGFKDVVKNAWDTTLEHHEP
FHVLYHKLRSTSQELKAWSKEIISDAKKLFFMAQEIILRLDIAQENRNLTAAELLLRAKLKKRILGLAVIERARSKQASR
LSSIKLGDANTKFFHRRVNARRRKNYIQRLRHGQGWAINHDDKASIIQDHFSNFMRHPPERQQDINWDELNLPSHDLSGL
DAVFTEEEIKLAIQQMPFDKAPGPDGYTGAFFRSCWDIIKVDVVNAANAFHSLRTSSLALLNSANVVLIPKKDGAEAITD
FRPISLIHSFAKILAKVLALRLAPHMSSIVSPAQSAFIKRRSIHDNYMAVRNAIRRYHNSKLPTIFLKLDITKAFDSVRW
EYLLTLLDKLGFPSRWQDWIAALLFTSSTRVLLNGIPNAPIKHGRGLRQGDPLSPLLFVIAMDPLQKLLDLATEKGFLSR
LRGRTAQLRASMYADDTAIFVKPTRKDILALAELLTLFGEASGLKTNFQKSTLIPIRCEGLNLNEILAGSPTEISCFPTK
YLGLPLTPQRLRRVDFQPLVDKTVSKLTIWNGRQINPAGRSTLVKAVLTSQAVYFLTSLRAPKGIIKDIDRQRKRFLWAG
AETLTGGKCKVNWPRSARPKYSGGLGILHLGKFARALRLRWLWRQWSPNFDGRLGDETPCNKTDKLLFAASTTLTIGDGG
KALFWTSAWLDGQRPCDVAPHLFSTSRRKNRTLQQALRDNNWIRDINIQHQSFSAQHLVEYTHLWQATRRITLRTGTPDS
LAWKFEENGEYTASSAYHAQFVGATKNTFEALIWKPWAPPKCKFFSWLAIQNRVWTADRLEARRWPNQRTCTLCRLHAES
GLHLFKDCRFTKRLWKEISTWAQNSYLHPSAWPPSNTTEEWWMAISNAPSTSRKGLRSLIILACWEIWKERNARVFEHRE
SANFVVLQKIKDEARLWILAGAKHLSSCIQRHHLRSVP
>LINE1-42_ZM_pol#LINE/L1 2785-6354 [Zea mays]
FLMTLFPMDPSKILFWNVRGLNRKVRRDGVRALVNNTCPDVVCLQETKKSSISRFMVASLLGVVFDEFVTLPAVGTRGGI
LLAWKSSSCKVTQYRIDTFSVSAQFQHNDGTLWWLTGVYGPQLDNLKILFLQELQLIRNLCNGPWMIGGDFNLIYRAEDK
NNGNLNRAMMGRFRRLLNELNLKELPLLGRKYTWSNERSSPTLVRLDRVFHTADWETLYPNSVLQSSASLISDHCPLLLG
LHELVQGKRRFHFESFWTRMEGFMDEVQQSWLQPLEGCCPLQRFAGKLMRLSKHLHSWSQKKVGNIKKQMLMAKEILHKL
EIARDSRSLSPQEEWLRQRLKHLSLALVSLERTIARLRSGLLWMKEGDANTKYFHQHARYRKKKNFIGKIQVQNRLIIDQ
KEKKEVVWDFYNSLLGMVPPRASALNLEAFHRCPLNLQELEQMITEEEVWHTIRSLPSDKAPGPDGYTGRFYKKVWPIIK
MDFMAALMKVWQGDASRLYLLNSAYVTLLPKKSEAIEVKDFRPISLIHSFAKIVTKILANRLAPKLPDLVSVNQSAFVKG
RSIHDNFVMVQQTAKAIYGQKMSRILLKLDIGKAFDSVSWTFLFEALRHLGFGPLWCGIVSRVLSSSTTRVLVNGEPGDI
IHHRRGLRQGDSLSPMLFIIVMDVLNSLILKAQDMGLLQPLLRRGRGQRISLYADDVVLFLKPEIDELNLLKEILRIFGE
ATGLVTNINKCSITPIHCNEQQVDMSKEIFPCNVQQFPCRYLGLPLSVKKLPKFAFQELIDKVADKLPGWKSALITNAGR
LTLVKAVLTAIPIYHLLVLLCPKWVIKAIDKIRRGFLWKGRKDIKGGHCAVGWTRVCRPLKFGGLGIHNLEILGWALNVR
WIWLRKTQVERPWTEFDIKVHPNAEALFRASVHSSVGDGATTLFWMDRWIQGQSIAFFAPYLFSRIPSRVRTGRTVQEAI
ADNSWIQDISRGLTAVVIREFLLVWDLIQDVHLQTGVPDVHIWVPCASGLYSSKTAYNSFWNGTTSFEPAKRIWKSWAPP
KCKFFIWLASLNRCWTADRLARRGMDHHDKCLFCDQHEETVQHILLSCVFSRNIWWQVWCKVGLQHLAPGPEDMIFQDWW
SNAEGQVPKEKRKGFNTLVILVAWWLWKHRNTCVFEGASPSTRDILQHIHEDATLWGMAGARGLRGLWP
>Polinton-1_CI_py#DNA/Maverick 12387-13679 [Ciona intestinalis]
MFIHKNSCECLKSELDLFSAPMTQTSVEDGMWVANGPQNGLSDSGTLEFLISGTKEHYIDLANSYMHIQVKIVNADGTNL
AEDAEIAPVNNFFHSLWSQIMLSLNNREVTSSGSMYPYRSYIESLLTFGSAAKSTYLTGALFYKDTPGHMDSIAAANVGA
TTRRAFAAESKVIDMQSKLHLDMMFQQRYLINNVDVKLKLTRSRDAFATIGVAGFKIKILAAVLHVRKVKISPSVQLGHI
TALSKGLCLYPILRAELKTLTIPRFNQSISHDNLFLGQLPRRVILGFVDNDAFNGRIDKNPFHFKTYGLSSLSLHSNGKQ
VPAKELTPNYGVGTYIRSYMSLFTGLNTFYTNASNGISREEYPRGFTLYAFDLTPDLASSGHFDLLKNGDLSLEAKFSEA
LPTSVNVIIYAEFQNLIQIDRQRSVLTDFSA
>LINE1A2_MT_pol#LINE/L1 2-2824  [Medicago truncatula]
EWHVTHSKDLSRKIKSLKERQSELDGKGESEDLSAAEIEELHVVSSDIHSLSRVNTSIAWQQSRVHWFREGDANSKFFHS
VLLGHRRRNRLHSIVVDGAVIEGVLDVRAAVFSHFSNHFKRCGSERIALDGLTFQTLSYAEGGGLTKPFSLEEVKEAVWD
CDSYKSPGPDGVNFGFFKDFWGFLKDDIMQFMVEFHRNGKLTKGINSTFIALIPKIDHPRNLNDXRPISLVGSXYKXLAK
VLANRLRQVIGSVVASESQSAFVKNRQILDGILIANEVVDEASRLKKELLLFKVDFEKAYDSVDWRYLDAVMEKMNFPIL
WRKWINECVATATASVLVNGSLTDEFPLERGLRQGDPLSPFFFLLAAEGFNVIMKAVVARSIFEGYKVGAPDSVPVTHLQ
FADDTLILGVKSWANVRAMRAILLLFEEMSGLKVNFHKSMLVGVNVSDSWLSEAASVLNCRVGRMSFMYLGLPIGGDPRR
LIFWEPLLRRIKSRLSGWNSRFLSFGGRLVLLKSVLSSLPVYALSFFKAPSGIISSIESIFYNFFWGGCEDSRKISWVNW
NSIYSRREDGGLGVRRLREFNLALLGKWCWRLLVERSSLWYRVLVARYGEEDGRLTVGGRRGSAWWHAIXNIGDGVLGVG
GGWFXEXMSRMVGDGTDTLFWHDMWLGEVPFRVRFRRLYDLAIDKSCTVANMFSSGWDVGGAGWRWRRRLLAWEEEMLGE
CAVLLHNVSLQVDVKDTWRWLLDHSAGYTVRSAYHLLTSQAIPHVEGAAALVWHKHIPLKVYIFVWRLFRNRLPTKDNLV
HRGILSDAEASCVLGCGAVETSQHLFISCDFYGSFWSLVRAWLGVSGLDPCIVFDHFIQFTHLAGGLRARHSFMQLIWLF
CVWVIWKERNQRLFNNIGSSIVQLLDKVKLHSLWWLKANHAIFAFSYHVWWSRPLHCLGLG
>L1MD1_pol#LINE/L1 2501-6319  [Eutheria]
MADLSPNISIITLNVNGLNTPIKRQRLAEWIKKHDPTICCLQETHFKYNDIGRLKVKGWKKIYHANINQRKAGVAILISD
KVDFRAKKITRDREGHYIMIKGSIHQEDIAILNVYAPNNRAAKYVKQKLIELKGEIDKSTIIVGDFNTPLSTIDRTTRQK
ISKDIEELNNTINQQDLIDIYRTLHPTTAEYTFFSSAHGTYTKIDHILGHKTNLNKFKRIEIIQSVFSDHNGIKLEINNR
KITGKSPNTWKLNNTLLNNPWVKEEVSREIKKYIELNENENTTYQNLWDTAKAVLRGKFIALNAYIRKEEKSQINNLSSH
LKNLEKEEQNKPKASRRKEIIKIRAEINEIENRKTIEKINETKSWFFEKINKIDKPLARLTKKKREKTQITNIRNETGDI
TTDPADIKRIIREYYEQLYTHKFDNLDEMDQFLEKHKLPQLTQYEIDNLNSPITIKEIEFIILKLPKKKSPGPDGFTGEF
YQTFKEELTPILHNLFQKIEEEGTLPNSFYEASITLIPKPDKDSTKKENYRPISLMNIDAKILNKILANRIQQYIKRIIH
HDQVGFIPGMQGWFNIRKSINVIHHINRLKKKNHMIISIDAEKAFDKIQHPFMIKTLRKXGIEGNFLNLIKSIYKKPTAN
IILNGERLNAFPLRSGTRQGCPLSPLLFNIVLEVLASAIRQEKEIKGIQIGKEEIKLSLFADDMIVYVENPKESTKKLLE
LISEFSKVTGYKINIQKSIVFLYTSNEHVDTEIKNTIPFTIAQKKMKYLGVNLTKHVQDLYAENYKMLMKEIKEDLNKWR
DIPCSWIGRLNIVKMSILPKLIYRFNAIPIKIPARFFVDIDKIILKFIWKGKGTRIAKTILKKKNKVGGISLPDFKTYYI
ATVIKTVWYWRRDRHIDQWNRIENPEIDPHKYAQLIFDKGAKAIQWRKDSLFNKWCWSNWTSIGKKMNLDLSLTPYTKIN
SKWITDLNVKRKTIKLLEKNIGENLRDLGLGKEFLDLTPKARSIKGKIDKLDFIKIKNFCSAKDPVKRMKRQATXWEKIF
ANHISDKGLVSRIYKELSKLNSKKTNNPIRKWAKDMKRHFTEEDIQMANKHMKRCSTSLAIREMQIKTTMRYHYTPIRMA
KIKNSDNTKCWRGCGETGSLIHCWWECKMVQPLWKTVWQFLKKLNMQLPYDPAIALLGIYPREMKTYVHTKTCTRMFIAA
LFVIAKNWKQPRCPSTGEWLNKLWYIHTMEYYSAIKRNELLIHATTWMNLQRIMLSEKSQSQKVTYCMIPFI
>L1MD1_gag#LINE/L1  L1MDa_5end_1056-2021 via tfasty with L1MA6_gag, 4 frameshifts and 1 stopcodon.  [Eutheria]
MSRFQXKITRHTKNQEDLKLNEKRQSIDANTEMTEMLELSDKDFKAAXIKMLQXAITNTLKQMKNRKSQQRNRKFSKEIE
DIKKNQMEILELKNTITEIKSSVDGLNSRMEGTEERISELEDRTIEITQSEQQRENRLIKKNEQSLRDLWDYNKRSNIYV
IGVPEGEEKEGGAEKVLEEIMAENFPNLARDINLQIQEAERTPNRINPKKSTPRHIIIKLLKTKDKERKILKAXREKRHL
TYRGKTIRMTADFSSETMEARRKWHNIFQVLKEKNCQPRILYPAKISFRNEGEIKTFSDEGKLREFVASRPTLKEWLKEV
L
>L1PB1_pol#LINE/L1 2509-6336  [Primates]
MNGIVPHISILTLNVNGLNAPLKRYRXAEWIRIHQPTICCLQETHLTHKDSHKLKVKGWKKTFHANGHQKRAGVAILISD
KTNFKATAVKKDKEGHYIMIKGLVQQENITILNIYAPNTGAPKFIKQLLXDLRNEIDSNTIIVGDFNTPLTALDRSSRQK
VNKETMDLNYTLEQMDLTDXYRTFHPTTAEYTFYSXAHGTFSKIDHMIGHKTSLNKFKKIEIISSTLSDHSGIKLEINSK
RNLQNHANTWKLNNLLLNDHWVXNEIKMEIKKFFELNDNSDTTYQNLWDTAKAVLRGKFIALNAYIKKSERAQTDNLRSH
LKELEKQEQTKPKPSRRKEITKIRAELNEIETNKKIQKINETKSWFFEKINKIDRPLARLTKKRREKIQISSIRNETGDI
TTDTTEIQKIIQGYYEHLYAHKLENLEEMDKFLEXYNPPSLNQEEXXTLNRPITSSEIEMVIXKLPTKKSPGPDGFTAEF
YQTFKEELVPILLTLFHKIEKEGTLPKSFYEASITLIPKPGKDITKKENYRPISLMNIDAKILNKILANRIQQHIKKIIH
HDQVGFIPGMQGWFNIRKSINVIHHINRIKNKNHMIISIDAEKAFDKIQHPFMIKTLSKIGIXGTYLNVIKAIYDKPTAN
XILNGEKLKAFPLRTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQIGKEEVKLSLFADDMIVYLENPKDSSRKLLE
LIXEFSKVSGYKINVHKSVALLYTNSDQAENQIKNSTPFTIAAKKIKYLGIYLTKEVKDLYKENYKTLLKEIIDDTNKWK
HIPCSWMGRINIVKMTILPKAIYKFNAIPIKIPPSFFTELEKTILKFIWNQKRARIAKARLSKKNKSGGITLPDFKLYYK
AIVTKTAWYWYKNRHIDQWNRIENPEINPNTYSQLIFDKANKNIKWGKDTLFNKWCWDNWXATCRRMKLDPHLSPYTKIN
SRWIKDLNLRPETIKILEDNIGKTLLDIGLGKDFMTKNPKANATKTKINXWDLIKLKSFCTAKGTVSRVNRQPTEWEKIF
TIYTSDKGLISRIYXELKQISKKKTNNPIKKWAKDMNRQFSKEDIQMANKHMKKCSTSLMIREMQIKTTMRYHLTPARMA
IIKKSKNNRCWRGCGEKGTLLHCWWECKLVQPLWKTVWRFLKELKVELPFDPAIPLLGIYPEEKKSLYEKDTCTRMFIAA
QFAIAKIWNQPKCPSINEWIKKLWYIYTMEYYSAIKRNEIMAFAATWMGLETIILSEVTQEWKTKHRMFSLISGS
>LINE1-5_SBi_pol#LINE/L1 3302-6898  [Sorghum bicolor]
MQVRKWNVLSWNIRGINSDIKWNAIRDRLCANNCDILCLQETKRDNFDPSYLRNFCPPSFDDFVFLPSVGASGGSIIVWN
SAILSGTMIFQNAYAVSIEFTSLHTNVTWILTNIYAPCTPQGKREFLRWFKHIQMPDHVDWLIVGDFNLYRSPADRNRDG
ADHAEIYLFNEAISALGLIELPLKGKRFTWSNKQNPPLLERLDWFFTSASWTLNYPSTSVSTLTAETSDHVPCLISISTA
IPKTHIFRFENYWLQRDDFLNQVTLGWTTESHHSDAAKLLTAKFKNLRKVLKIWKLSLSNLKQNISHVKLVLDFLNLLED
FRDLSLVEWNFRSILEDKLISLLQQQKTYWKQRGTVKWVTLGDANTSFFHANATVKHRRSLITHLVNDQGQSLFNHEDKA
NLIWNSFKERLGTTNFSQVHLDLPNLLQNTVDLSSLIQPFSHEEIDAIVKHLPCDKSPGPDGFNTDFLKKCWTLICQDFY
DLCQAFYSENLCLQSINGSYITLIPKKDDPSMVSDFRPISLLNNSVKLITKLLANRLQSVIPSLIHKNQYGFIKNRTIQD
CVAWALEYLHMCHQSKKEIIILKLDFEKAFDKVEHGLMLQIMEHKGFPTKWINWMKLIFTSGTSSVLLNGIPGKVFHCRR
GVRQGDPLSPLLFVLAADVLQSVLNLACANNRLALPLPLEHDTDFPILQYADDTLIFMQGDVSQLQHLKDILHVFGESSG
LKVNFDKSFMVPINISNERLDTLTEVLGCSKQTLPFTYLGLPLSIAKPSVAHFWPLVSKCERRLVNFSSLLSEAGRLQLT
NAVLSALPTFAMCTFLIPKTVLKQIDKFRKHCLWRGSNLNCKKPSKAAWPLVCRPKIEGGLGVLDLQIHNESLLMKFLHK
FFNKLAIPWVHLVWEHYYSRNNLPSLHRPFRGSFWWRDILKLLHSYKEVASIHIQNGSTCFMWLDNWNGTQLNQRYPELF
SYAKSQQVTLSTAVSSTSLEELFHLPLSVEAFQQFQDLSTALQTLHLSQDNDVWSYRWGSTHFSSKQVYKHMVGHSQIHP
SFRWLWTSCCQNKRKFFFWLVLCDRLSTRALLRRKGMFLQDYNCVCCSLNLEEDLLHLLFHCPFAMACWYSLQVFIPNSD
DIATILESLRTQLGVPFFMEIIITMCWSIWMMRNDIIFRNMAHTIRRCKAVFQKEFALVILRAKARYHPSIDLWLDSFV
>LINE1-4_SBi_pol#LINE/L1 2950-6501 via tfasty with L1-7_SBi_pol, 11 frameshifts. [Sorghum bicolor]
MNPSSILVWNVRGLNRRDRRNSVRDVILSSNADIVCLQETKVANMSQHLFLSVFGSAYDNFVALPANGTRGGVLIAWKGC
SCQAVASRVDTYSASVLFAEQEGRNWWFTGVYGPQGDDEKVLFLQELRNIRALCNGPWLLGGDFNLIYQAADKNNANLDR
AMMGRFRRFLDDNDLKEIPLLGRKYTWSNERRSPTLVRLDRAFCCGDWENIFPDAVLQSTAAGDLDHCPLILGLKVSTTG
KRRFHFESFWTKMPGFRDAVKQNWEAPVQSNCAVERLFIKLQRLSKGLQKWGQRKVGNIKAQLELAKEILHRLEIERDFR
ALSDHEEWLRKKLKLHCLGLASLERTIARLRSRILYIQEGDANTAFFHQQARYRKKKNFISKLQVGNQVVVSQEDKQKAV
DDFYENILGRAEERDYTLDLDALGIQQHDLSELDVPFSEEEVWATIKDMPLDKAPGPDGFTGRFYKSCWSIIKGDVLMAL
DAIQRGHVFKFRLLNTAYITLLPKKVDAVEVKDFRPISLIHSFAKLVTKLLANRLAPLLPSLVSANQSAFVRGRRIHDNF
MLVQQMVKSLHKKKEAHILLKLDISKAFDSVSWSFLLEVLRKVGFGQRWRDLICLILSTSSTQILVNGEPGDTIYHHRGL
RQGDPLSPMLFILVMDVLNSLVNYATSMGLLQPLAVQQARHRVSFYADDAVIFLRPYNLDLITIRHLLDLFGHASGLRTN
LAKSSVSPIHCSDEELASRQNSLCSIKAFPCTYLGLPLSIGKPTKEVLLPLVDKVADYLPGWKASLMNRAGRLVWLRSVL
TAVPIYHLIALDLPKWVIKAIDKKRRGFLWKGHQQANGGNCLVAWEKVQRPLEYGGLGIHNLELLGCALKIRWLWVQKTD
DERPWAGLPIAVPHKARALFHVAVDAIVGNGEKILFWTDRWLDGHTMAEIAPNLFKAVPKRTAKRRTVAQALHNRSWVQD
IKGARTVEVMLEYFQIWDMVDGFVLHPETPDQFRWKLTQDGSYSSKSAYAAFFEGSIKFGSWRRIWKTWAPPRCKFFIWL
VFHNRVWTADRLAKRNLPHPEACPLCDQEDETINHLLVGCVFARQVWSLVLQQLGLLQLSPQPTATRFSGWWKRSTAAVP
KEARKGLNSLIILGGWEIWKHRNTCVFDNKRPSVQEVLRAISSEGGLWCSAGASKLQELVLRLPSGA
>L1_Canid_gag#LINE/L1 L1_Canid_1367-2260 1 stopcodon [Canidae]
MTRWRNSPQKKEQEVVLTARDLINTDISKMSELEFKTMIIKILAGLEKSIEDTRESLTVEIKELKSSQAEIKNAXTEMQS
QVEAIKTRMNEAEEXISDIEDKXMENKEAEKKRERKLLDHEGRLRELSDSIKRNNIRIIGVPEDEEWEKGAEGLFEQIIA
ENFPNLGKETGIQVQEAQRTPLKINKNRSTPRHIIVKLANYKDKEKILKAARDKRSLTYKGRHIRLAADLSTETWQARKD
WHDIFNVLNGKNMQPRILYPARLSFRIEGEIKSFQDKQKLKEFVNTKPALQEILKGTL
>L1-42_XT_pol#LINE/L1 1704-5528  [Xenopus (silurana) tropicalis]
MVKILTLNVNGLNSVMKRYMLIRELHKIRPDIAMIQESHFKTSENHTLKTKLYPTIYQATANSKKAGLITLIHKDCPFEV
KTVQTDPRGRYLILDGTLEGKTLRLTNLYSPNKGQLRFIKSTLTRAKGDHQNPTIIGGDYNLVLSENRDRSHPSQLQQYK
IQCQRFRQLIRRLDLRDIWRIHHPNERAYTFYSACHQLYTRLDFFLVSRDLLSYTATSDLIPISWSDHHAVIIDIQLSVP
ARRFPHWRLNEALLSDPHTCADLTQAIQDYFINNIHSVDNPTILWEAHKAVLRGKLIAIASAKKKEKSHTKVTLERKLKL
LEHKAHIHPSIKIRNEILGVRRELNLLTSGDIEKALKWTRQKFYERGDKPHSLLARKLREQIAHAAIVSVNKANGERTFS
PKEIAKAFQDYYTELYNLPNPQIPTQPAGKNPNQTFLIENVHTTLSQTEAESLNKTITEEEVKETIRSFPTSKAPGPDGF
SYAYYKKFSSLLIPHLTKLFNSFLAGKPIPHTMLASYITLLHKEGKDPNLCSSYRPIALLNSDLKIFTKLLANRLGPLMP
KLIDSDQVGFIYGRQAGDNTRRAIDLIDIANKTQTPTLLLSLDAEKAFDRLDWNYMFELLAHLGIGGPFLKAITNLYSEP
TATLKLPEASSGQIHIRNGTRQGCPLSPLLYALSIEPLAAAIRNHRDITGLKIKDREYVISLFADDVLLTLTNPVISLSN
LHALLRQYSKLSGYKLNVDKSEALPLNIPSQVKEALMSKFHYKWKTHSLKYLGIQLTKTYSQLYNTNFPPLLKHIKASLH
KWSTYTISWLGRITAIKMTILPKLLYLFETLPVAVPKTTLKDLQASVFKFIWGKRRHRIARTVMMAPKTQGGLAVPYIKA
YYEASHLRQILGWTTYNPTSKWAQIESLWISPVHPNSLLWEIKEKGQSLILSPMQFTLAIWKQCKAKYRLANPHSRLTPL
LANPSFTPGMSERFKQQWGTKGLFRIHDFINPLTHKQWTFAEIQDKFHILPTRHFEFAQISHFIQTTLPKDQNPPYITPF
EKLCIKGLPQRALISTIYSILNALPEDPFPKHSYMLKWEEITSTTLSIEDWGEIWDNARRNVTCVRQKESIYKSMYFWYD
TPVKLNHMFPGTSPFCWRGCGQKGTLQHILWSCSKIVPLWKTIEELLSCIFLRKVNLDIYITLVGKPIPSLTYAEQRLTN
YILTASRLAITSQWKNPNPPKLNDVLRKVKDMREMEYMTANVRGTQENWKKVWSKWDYYITNPLGRGDAHPSQQF
>L1-40_XT_gag#LINE/L1 125-1240  [Xenopus (silurana) tropicalis]
MAGTSPKQKKRPKNSAASESAGEKGTHQISKMADGISQNHAVSEGCSDLKAHTMNYKQMALEVANLINPTIEKSIEIAVK
NLQSEINKIVEQVTSHNASISEMEERISSLEDYSSSAKSKIQFLEKKISDLENKTEDLENRSRRNNLRFVGIPEHYKQDS
LIKLISQWLPKSLGLQNDITSLKIERAHRVGPGKDLPHQKPRTVLVKFLDYSDKTLILQTYKKSKNLYLEKDKILMFQDF
STTLSKKRQNFTNVCQMLFHHEVKFALLYPAILKMFLDSGVHSFEDYKEAERFVHDFTSHLGKSSSHVTKSFNSKGQFTA
EQRDTSGAHSSHIARKVSPFIKRDRKIHNSQPRSRSPIDKNTSSLDQSLMES
>L1-43_XT_pol#LINE/L1 1642-5436  [Xenopus (silurana) tropicalis]
MAKIISINAKGLNTITKRYLALKEIQNLKADIAFIQETHFQKERPYKLQSKYYTRAFYASAPTKTAGVAILIHKDCPLTV
DQTHCDPNGRYILLVGKYMDTPLVLCNIYSPNKRQISFLRTIFNKCTTQTPAYQVVGGDFNLVYSQQKDRSNPSPDKSAH
FLSKEFRKLINQNALYDTWRINHPKTANYTFYSPVYKTHSRIDYIFVSQPCLRLSFSTEIHPITWSDHSPTTLTLDLVKL
PPKEPHWRLNETILHDPGTVQQLEKALKDYFTLNEGSVQSLATLWEAHKATIRGQIIAITTNRKRALQSEQNTLLSQLHT
LESNYNKNRSEQHLTQIIAIRKQLSTLKHEHIEKAILWTKQKFYEQGDKQHTLLARKLKDQITQSRITTIKTAEGQLTYN
QDQIGDTFHEYYTQLYNLQPAHTGTTTPLQNTESLTKFFKEAKLPKLTDEDNQTLNRAISIEELLSVLKQMPNGKSPGPD
GFSYKYYKVFSQILGPYLVKLFNEFLQGTPIPTSILSSYLTLIPKEGKDPNLCSNYRPIALLNSDLKLFSKILANRLAPI
LPKLINGDQVGFIQGRQAGDNTRRTINLIEILHRTHTPAVLLSLDAEKAFDRLSWPYLFSLLSHLQFSGPFLLALKALYH
TPTTQLKLPGQSHKRIKITNGTRQGCPLSPLLYALSIEPLAATIRNSTDVSGVTFKDTPLKISLFADDVLLTLTNPLISL
PNLHKILNTYSSLSHYKINVNKTQALPLHIPKRQLQYLQESFHYNWQKESISYLGTHITANYTDLYRHNFAPLIQRVKSL
LQKWSKFSMSWFGRISAVKMTILPKFLYLFETLPIPVPPKILKHVQAVCHNFIWGHHRHRIHRNTLTTPCRLGGLGVPSF
SRYYEAAHLRQLLAWTHGSLNSIWAHTENAALQTGHLNHLIWTHPHCTTEKGTLLSSTRHTLSIWYRLRQKWGLISTKPL
NTLFLNNPDFQPGMHPHFIRKWIDSGIQMVADLLNPFTKEMKPFEELKLKTNQNTLTFYEYLQLRHFTKPYSDRAKLTLP
TPFELIAKKGLPQKGLISRIYQILSEPKANPTIRHPYMNKWDSNLPQPMTEEDWTLIWGNAKKMITCSRQKEHIYKILMF
WYHTPDKLHTLFPDHSPLCWRNCGERGTLPHIFWSCPLISPLWIEISDLLRKVLRAPIPPDITTFLLGKPLPKTSKSNQA
LINHILTATRISIAAKWKTTSPPTLAEIKKRVESNKAFEAGIARLTNKTPKFLKIWTPWELFANE
>L1-47_XT_pol#LINE/L1 1767-5564  [Xenopus (silurana) tropicalis]
MVKLLSLNVKGSNSPTKRKLIMTELRKQHVDIAFLQETHHASDEAWRLQDRNYPHHFYASSKTKKAGVAILFNKTLTFQH
RQKEVDPNGRYIILEGILEGVQIVIANIYAPNVRQIHFLQRVLNKIATYQNHKVILGGDFNMVFSQLRDILRPHTAPPNK
DTALCSQNFRKLMRRAMLLDIWRIKHPTQKNYTFYSHPHKTYSRIDYFFISPRLSSQDLKTHIDQITWSDHAPILLNIPL
QIDRSPVNSWRLNESLVTHRDTQQTLSEKIKDYFTLNKGTTLDPAILWEAHKAYIRGEFISLASAAKKRRNNTLQEHKKR
LHYLEHNYSQRPTKRLLLDIIQTRNNIKDMMLHTVEKALRWTQQKYYQYANKSHTLLANKLRGERAKNTPTVIQHKGKLE
SNPGKIVECFKEFYKQLYNLPPHKTPRETLIQFLQDSKLPTLTTAELRALNATITAEEIAEVIKHLPSNKTPGPDGLTYK
YYKLFSKELLPTMLDLFNGYLQGTPIHKETLKSHITVIPKEGKDPTSCANYRPISLLNSDLKIFTKILANRLNIILPRLI
HLDQVGFVKYRQPGDNTRRVIDLIDSLNRKREEALILSLDAEKAFDRLDWGFMFATLETMKFQGPFLQALRALYSHPTAI
VKTAGLLSQPLSITNGTRQGCPLSPLLFVLCIEPLAAQIRHNPDIKGVTIKQKEYKICLYADDVLLTLTRPLLSLPNLHQ
IITTYGKLSGYKINNAKTEALPMHIPASKLKLLQLNFNYNWRKDTLKYLGIHLTTSYDTLYKHNFTPMWKLLITELDTWH
NYNLSWFGKVAALKMNLLPRLLYLFETLPIPVPKSAFKHFQSKCLRFMWGRKRHRIRIQVLQAKRTQGGIGFPNFYKYYL
ATHFRQLTYWNQKIAHTKWAEIEMLQMNPIHPAALLWSEGLKGDIGSLHKPAQFNLKLWFAKDNLLKPQSATSPLTPFLN
NPGFKLGMEKHFIKIWEHTKAFQIQQLFDWKTHKFIDKAELIQLYQLQGLTDYMYYQLRHYVGSLCPRLLKRDLTMFEHI
CSRSTSQKGLISTLYNILTDQDIENSPHPYMQHWDTELGIHITLEQWEKIWRIASKTSICTTLKENLYKVFLEWYHTPFL
LQKLFPGTTSACWRCNHNPATIYHIFWTCPVISALWDKTSEILSKITCLSLQKDPLTYLLGLPLQGIGKRVQKVVQSVLL
GTRCLIAAHWKSPTMPPIPELIKKIQFIRSMDYLTAILQDKALPFAEDWFLWDSYYGQLHNHVDTI
>L1-46_XT_pol#LINE/L1 2112-5963  [Xenopus (silurana) tropicalis]
MTKLLSLNVKGLNSPRKRTLAIKEIQKHGAHIAMLQETHFKASDNNRLRIRNYTQSYQACNDQKKAGVITLIRKDCPISI
TKQIADPRGHYLLLQGTYVSIPIILVNVYLPNVKQLHTLRKVLSKLAKTTAPITIIGGDFNMVHSDILDRDNPPNLKARL
THQAKQFRSMLRAHSLLDIWRIKHPKERRYTFYSSPHKISTRLDYFFVSPQCLKHPIESSIQAISWSDHAPITVSISLPP
SIPKQSHWRLNETILHNIETKDKVLDSIKEYFTINKDSVTSKALLWEAHKATIRGQLIALSTAKQSARRTETHNLEAKLK
NLETSYNTNPTPALLHEIQSARNLLKQSALKSAEKTMIWTKRRYYQSGNKAHTILAQQLKKSYNQSQILSIQTGTGDLTY
DPRQIAQAFHRYYSTLYNLTDAPSRCEANLSSTLASFLQDCKLPKLTIEELEKLNRDITVEELLDVIKSLPSQKSPGPDG
FPNSYYKIFKDYLSPILVDLFNDFLRGREAIPDTMLSSYITLLPKEGKDLTLCANYRPIALLNCDLKIFTKILANRLARI
LPRLIHLDQVGFIMGRQAGDNTRRTIDIFDTIQKLKLPTIALSLDAEKAFDRLDWSFMVKLLQYMGFRGPFLQAVKLLYS
NPKAYLKLNGDGGTPISIHNGTRQGCPLSPLLYAISIEPLAARIRTHPDIKGITINNEVYKISLFADDVLLTISNPVVSL
PNLHKTLQQYSIISGYKINWSKTEALPMNIDTRTKKAMTQTFKYKWQTSHLKYLGIHITPKYEDLYRANYIPLLKKITQD
LKEWDNYPLSWFGRIASIKMNILPKLLYLFETLPVAVPGAGLKNIQRDILRFVWGSAKGRVSRSILLTSRQQGGLAVPDI
SKYYDAAQLRQTLPWIQPTPPTRWAQIEASYTYPYHISCLLFVEKGKTLLPDTAPAPIKFTAMTWNRCKKKYKISGPHSL
LTPILGNPEFSPGLLWNHKTTWAPINMTKIHNFMDPRNHKLYPYERLKEKYKWAKDKFMEYLQIQHFINSKLGTTAINPL
TPYEKILSSPFPYKGLISHLYKLMVTIPEDPFPKHSYMRYWEEALGIELSDHTWSKIWDNANHIVTCTQQKESVYKVMMR
WYMTPDRLSKIYPNSLPHCWRGCTARGTLSHILWQCPLVTSYWKEVGDLITSVLAIPLDIQPPHLLLGQPIARLKRPVQK
LVNHITTAARLALTSKWKSHNIPNISEVITRVESNKRFETMTASITNNVQLNDNIWSPWEAYLASNPRENPEIHTSTNNM
SDGN
>L1-26_XT_gag#LINE/L1 136-1002 L1-17_XT_gag about 90% identical [Xenopus (silurana) tropicalis]
MGGNKGPKKQTDTSQKLDQFIRRPVQDGAEPPSPPAPPEEHTADALALVLTAIATCQATLTARIEEVKIDLSLIKVDLQT
IRERTTAVEAKVSQLEDTCAPFPAQLTDLRQQLKLQAALLDDYENRQRRNKVRVVGLPEGSEGKVPTEFAEQWLKQLLPH
AAFTTHYTIERAHRVPGRPRPPGPPPRLFLIRLLHFRDRDAVLSEARAKGRLEHNGAPVSLYPDYSTQLQKLRSTFTGVK
RKLRELNLTYAMTYPAKLKINDANRAYFFTTPEEAMEWIEARPRRSPRP
>L1-25_ACar_pol#LINE/L1 1094-4849  [Anolis carolinensis]
MSRKLKMYSNNVNGLNAPQKRNKIFSRLKKLDYDIISLQEVHIKQXHAKLLTQPKLGQEFHSLDAQKKRGVVTYINPKIP
AELSFKDNEGRILGVAIKLENLKILVCNIYAPNESKSKFVKKLKEFLEEKEFDGIILMGDFNGVLNNEIDKNPGKDRGKR
KNKETLSKEFKKLKEEYNLVDIWRLQHEKDRDYTFFSARHKSWSRIDMIWISRSLSPKVTKSKILPMLDSDHSPIEIILN
QKRGRWKWRLDENLLKRKEDIEKNRKLIEEFFTINNNQETSPTIVWEASKATMRGYFLQQSIQKKRKNQEQLKQAIEKIM
ETENKLKKNPKNNKLLQELIIRQKNREHLELEQRAKQLKYIKQDHFENANKPGRWLSRKLRKKRESTFINRIKIGEKYYY
TDKDILDQFHKFYSKLYEKDNIKEEKITSYLGKLKLERITTEERELLNKEISIKEIEEAIRKIDGSKAPGPDGLTAIYYK
TFKKELAPHLQNVMNIIRNQKKMPDTWKEASITVIHKENNDPEEIKNYRPISLLNIDYKIFSNIVAERLKKFLVNWIKED
QVGFLPNRHIKDNIRIVLDLIEYYEINNQREMIFLAIDAEKAFDRVNWNFFKFLAQELDMGYYFQNLLETIYQNQTAKIT
INGLETEPIKIQKGTRQGCPLSPLIFIMTLEILLNKIREDKELQGTVIQGTHYKVRAYADDLICFIEDPVRKGEKWIETI
KEYGDLAGFKMNISKTKALAKNIQKEKQDRITEQLGIQITPKIKYLGINITPKNIQLLKNNYEKTWKEIKKELETWKNLK
ISLLGRMATIKMNILPKMLFLFQCLPILRNQKNFINWNKDISKFIWNGKKPRIKIKNLTDDKSRGGFSLPNLKLYYEASN
LLWIKDWIQLKNKKILNLEGFDLRTGWHSYLWYDKTKIEKNFCNHLIRSALIKTWDKYKTRMYNKTPRWLSPLEASQRRL
LGWSNWPKYEDLIKKQGPEHILMTQQEIKIKYPNLSWLQYGQLKESFKKDKTLGFMEKNNRWDRILETKRKIISKIYKVL
LEWDTETEIVKECMTKWAKDIGRVIHMDEWEAGWNRKLKLTYSYDLKENWMKMLYRWHITPKKLGLINKSRNTKCWKCGE
EEGTYFHMWWKCRKAKEFWSNIHQSVTKILEKRLNKLPETYLLGISNLPPGSNEEKIMTYLTTAARITYGRYWRQKEIPS
ETEWLTKVAEIKNSDRLTFLMAKQQGKPRKETNWQQVDNYINRKEKRKNKEK
>Polinton-1_DPe_px#DNA/Maverick 9892-10440  [Drosophila persimilis]
MVNVTEFFVTLLSNDSLNVYHDNVKCAFTNIVNIPENMNDDWEVGITDLYLNKCIKSRPENTSIVSEETTEFVISLVNGE
TFRYENESIESEQFQNGLIFVYTDIIKPRCVGNKRPRCLRVLHYNGKEQLIQFNNIEYYPIEIWSPKEISILITDSKGYK
VPFESSAIPIFVTLHFKKRKEML
>L1-37_XT_gag#LINE/L1 74-999 via tfasty with L1-1_XT_gag, 1 frameshift. [Xenopus (silurana) tropicalis]
HKVSSNAAQTLSKYARQTHEPPHTQRNTDIPEIQPALTELPSPPPPTPMQPSLGEIANLLHTNHATVLNRLDELKLDFNI
VKLDVQNLRERTHETERRISDLEDRTQPLQNIIDNHTNKIAALQAKTDDLENRLRRNNVRIVGIPERAEGRQVELFVENW
LVQTFGKETFSQCFIIERAHRIPSRPPPPGAPSRPIIARILNYKDRDKILQEARIKGPIQFENHNVSIFPDFSMEVRNQR
LKFTTVKEKLRKLQLPYSMTFPARLRVIKDDKAHFFTSPEETIKWLETLVGHPPPPRSPRHLPTGQRAP
>L1-36_XT_pol#LINE/L1 1584-5486  [Xenopus (silurana) tropicalis]
MVKFYSLNVRGLNTPQKRNLALNEASKVKADILFYQETHFKKPNPPSFQNRKYPIAYHALSCTKSKGVSILVGTAIAFQL
HQQFADPSGRYLMLICSINNQVYTLINVYTPNENQIQFLTKTLTHLMQHRQGKCIVAGDFNNTLNPILDISRLNMKQNNR
DQVPARKFRELLHKFALTDVWRAKYPTEKEYTYYSPRHATYSRIDLILADPQTTTQTTKAWIGIQSWSDHAPIGIDIQPL
PTQHIISRWRLNDSLIAHQDTQTYIKQEIESYFQTNTTEETNIQLTWLAHKATLRGTIIARASQLRKQRDQKVNELQTKI
KLAQNEQHKHPSKTQEQLIQIQKTELQQILLAKTEYRLKMLKQNYYTKGNKADKLLAAQLRIKQAQTRIQYLTKQNHKIT
DPLQIANQFAQYYNSLYNLKDSKTEPQPTTKLIHQYLSTLNFPQPSPTQRESLSAPITIEEITQAIKQLKLGKSPGPDGF
TNIYYKTYQATLLPHLQKLFQNIMDTGQIHQEFLQAHISTIPKPGKPQDQCQNYRPIALLNTDLKIYSKILALRLNTVLP
SLINYDQVGFVPGRQAPDNTRKLHSLLHIIKXQKIPALILSLDAEKAFDRIHWDYMNHTLQKFGLGTNFIKAISPLYSKP
SAKVCTGGVLSNAFQLTNGTRQGCPLSPLIFALMVEPLAINIRQNPNITGIPTRSGHHTIGLFADDIILSITNPQITLPN
IMAELNNFYQISWYKINSSKTQALPINIPASEITRYKQIYPFDWRETYLTYLGIKLTKDPELLYKHNYIPLQKQLQAEYT
RWKPLHISWLGRIITIKMNILPKILYLFRTIQIALPPRYIKLLQSQISDFVWAGKRPRTAANILQQPTVNGGLGLPNXQN
YYKASLLDTAIKMHSPQHYRKWVDLETEELRNTTIPQLIWLPPRKRPHCPNLLPTTKIILDVWDRLSQANTFVHYPSLRM
PITNLTYLIPDLHLQTWTNQGLQTISDLYEIRRPRTFEEIQQKFHLPGKEKYTYLRIKHFLTKHLANYKTKPQPTFMEHL
CKDGWNRRGTLSQCYQNLNLDPPDLKHPYMNKWDNDLQITTTAEQWREATAALSGATSCTNHWESYKKTIYRWHLTPEKC
HKFTKNSSPMCWRGCNQIGTLLHMWWECPPVHQIWTQVYQLINSGLQINLPCEAQVALLLHLPDNIARNNKKLLFHILNA
TTTMIAKHWKSGGPYNLQEIIQAIDNRNTMEQMAARNANKMAVYEQVWTTWTTYREKNTSPSAQSRPNNQQQLLNTRDNN
TTPDPGDTNPTPQQDNELSDQ
>L1-48_XT_gag#LINE/L1 249-1223  [Xenopus (silurana) tropicalis]
MDAPPDSSPPSSPGIKDSDATAHMPQTGEITAVQTLTTHTAELVTVQVLSQQLADFHEKLTGSITDTIRGALKDIQSDIT
NLGERTDQLEVTVDELILRHNSLEEENSTLRDELISLKSHVEDLENRSRRQNLRIRGVPEEVTAQEIRPYLRSLFSTISP
DLPAEAWRFDRAHRALGARPPNVTTPKDIVVCLHYFESKESIIIKTRNIQHFDHQGHKIQIFNDISPITLNKRRELRPIT
QRLREHNIQYRWGFPFKLIVTKGNRQYILYDPSQGPKFLKDIGLPTLELQHPPPNRKRQQQDRLTPIWNKTGPNTTKPDS
PPRAS
>L1-99_Cis_pol#LINE/L1 3315-7121 [Ciona savignyi]
MVSRLLNLFIMALSVATYNVAGIRDNDKRNAVLNFIRQKRFNIILLQETHCSTEIQKRWELEWGSKIIWAHGTSRSKGVA
ILFDNKTPYKVGKTLIDPNGRFVIAEVGFSATTFVLVNVYAPNNDDPQFFRDLFQNIVSLAGINEVIIGGDLNIIMDATL
DRHRPGASNKATATNVVRAHLQTLGLVDVFRSRNPQLKRFTRFQANPYSASRIDYLLTSKNXIPKITNCNIVPSIKSDHN
IVYXKLALDTSDRGRGIWKLNTSLLDKNAFISTVKQAITDYGINNPPGHVNAHVRWDALKCTLRGTCINFSARLKRSAQK
EQRRIENEIKMAETVLADSSIVAQSNVETLNKLKCELNDLVERRSKGAIIRSRVRWVEXGEKCXKYFLNLEKRNAEKKAI
YRLESNGAILTDQAEIVNELATFYESLYKKSATLTPVEXISSHLSSLDIPCLDENTAKSIEYAITEVECRKALDTMPNNK
SPGSDGFPAEFYKLFWVAIKSYFMDALHLTERNGYLSETQKHGVITLIPKPNKNLLLATNYRPITLLNVDYKIISKVINN
RIKSLLPPLIHPDQNGFMKGRYIGNNIRLLFNLIDYCDAESIPGAIFNVDFYKAFDTLSWTFVNQMLKRWGFGQHIQNWI
RTFYTDPSCSIINNNHVSKQFKSQRGVRQGDPLSPTLFVLAIEILAVEIRSXQIPGITVXEKEIKISMLADDTMITLDGE
AKSFNLAYKILENYGKMSGCVINLQKSNAFYIGSKRSCDLKPLLNKGLPWPNDEIKYLGIVFPIGRNNNGRDLFNINMTE
PLNKIKTLLNIWASRTLTLLGKXTVIKSLVIPTLTYKLSVIPTPPPIYSVFLKKLKQSIFHFIWGSKWERIKRTTLCRDI
GEGGAKMLDIDAYILALQAKWIXNLLDSDYHAAWKDVENVYFSKAALAATLQSKLRETSNDIVRLFPLRALRTTAVAVRR
VYSSGTRLDRINDPRYLWLNPNIKSRNRTFFIVDLAEAGITNYSQIINTEGNYMSFKELREAYSITDTLDNFTEFNKLIC
AVPEAWDXGDPQSPSKTDYSTKLFDLIENLKDYQTTKSIYNDVIAASATTSXKPQESWARSLDITIENWGQIYRDNYFCT
LETRYRSFQIKLNNRAIVTNDKLHRMGFKDTNRCGFCKIEPETLTHLFYFCPKIKAYWNNVENWLSAAFRRPXSLTPQNC
FFGIVNNCVINCILLCARFCIYRGKTTDTVPTIHLLISEVEALRKREMIIAKKXNKLXSHHRKWTTIPE
>L1-94_Cis_gag#LINE/L1 81-1202  [Ciona savignyi]
MKLADMLQRNEKIKFVRLYESSKINIAIGWVPVPLKNDEIKAFFEKNYLPVHNVQSKLNKLGLISGMRILSVSKEDLNLN
PIPSYININDFELYVTYTGQVRTCKYCQEPGHKQSECKMRELDFPKLESKAVEASTTIPENSPRARVGAAQTDGKLVKEA
SLAEGTQFQHNHAKKDANSGLKEIKISQENRGNKRALSSPEAVPLPATKSMSLNVNNMEVRCPKCNREGLIQEENNKFHC
FNCASEYKVAKPCCNNDARFLVDTSQTTTNCAVCRERMLILPCCKEFQPELKKSTRIVSCLTCDADSIICACGTLSIETS
PGNYKDCSNPECKNVIFSCVCGYAGSECKSKKSSTKCRCGAVFNWIDSGRNATS
>L1-BT_pol#LINE/L1 4204-8019 [Bos taurus]
MATGTYLSVITLNVNGLNAPTKRQRLAEWIQKQDPYICCLQETHLKTGDTYRLKVKGWKKIFHANRDQKKAGVAILISDK
IDFKTKAVKRDKEGHYIMIKGSIQEEEITIINIYAPNTGAPQYVRQMLTSMKGEINNNTIIVGDFNTPLTPMDRSTKQKI
NKETQTLNDTIDQLDLIDIYRSFHPKTMNFTFFSSAHGTFSRIDHILGHKASLGKFKKIEIIPSIFSDHNAVRLDLNYRR
KTIKNSNIWRLNNTLLNNQQITEEIKKEIKICIETNENENTTTQNLWDAVKAVLRGKFIAIQAHLKKQEKSQINNLTLHL
KQLEKEEMKNPRVSRRKEILKIRAEINAKETKETIAKINKTKSWFFERINKIDKPLARLIKKQREKNQINKIRNENGEIT
TDNTEIQRIIRDYYQQLYANKMDNVEEMDKFLEKYNFPKLDQEEIENLNRPITTMEIETVIKNLSANKSPGPDGFTAEFY
RKFREELTPILLKLFQKIAEEGKLPNSFYEATITLIPKPDKDPTKKENYRPISLMNIDAKILNKILAIRIQQHIKKIIHH
DQVGFIPGMQGFFNIRKSINVIHHINKLKNKNHMIISIDAEKAFDKIQHPFMIKTLQKAGIEGTYLNIIKAIYDKPTANI
ILNGEKLKAFPLKSGTRQGCPLSPLLFNIVLEVLATAIRAEKEIKGIQIGKEEVKLSLFADDMILYIENPKDSTRKLLEI
INDYSKVAGYKINTQKSLAFLYTNNEKTEREIKETIPFTIATERIKYLGIYLPKETKDLYLENYKTLVKEIKEDTNRWRN
IPCSWIGRINIVKMSILPKAIYRFNAIPIKLPTVFFTELEQIISQFIWKYKKPRIAKAILRKKNGAGGINLPDFRLYYRA
TVIKTVWYWHKDRNMDQWNKIESPEINPRTYGHLIFDKGGKDIQWIKDNLFNKWCWEIWSTTCKRMKLDHFLTPYTKINS
KWIKDLNVRPETIKLLEENIGKTLSDIYHSRILYDPPPRIMEIKAKINKWDLINLKSFCTSKETISKVKRQPSEWEKIIA
NEATDKQLISKIYKRLLQLNSRKINDPIKKWAKELNRHFSKKDIQMANKHMKRCSTSLIIREMQIKTTMRYHFTPVRMAA
IQKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRFLKKLEIEPPYDPAIPLLGIHTEKTRRERDTCTPMFIAALFI
IAKTWKQPRCPSADEWIRKLWYIYTMEYYSAIKKNTFESVLMRWMKLEPIIQSEVSQKEKHKYSILTHIYGI
>Polinton-1_DGr_int#DNA/Maverick 6067-6981 (reverse) [Drosophila grimshawi]
MSRRNLIEELHAPARKNFKRRRVIMKGIDDHWQADLVEMRQYSSSNKGYKFLLTVIDTFSKYAWGQALKTKSAKEVERAF
SGILKENRIPKNLQTDDGKEFFNTDFKSLCRKHNINHYSTFSGLKASIVERFNRTLKEMMWREFSYNGTYCWITIYKQLI
NEYNRKHHRTIQMSPVDVNSLNENKLLNTAYNHIKIFNGSKFHVGDYVRISKHKHTFEKGYTPNWTTEIFKINQIQNTNP
TTYILEDYQGAVLKGGFYNEELRKTRFPNTYLIEKIIRRRKDRVLVKWLGFSNDQNSWININEVL
>L1_AC_6_gag#LINE/L1 1110-2117  [Anolis carolinensis]
MKITPRRNSLPEDTSWKDLLREIQSISSKQDILQKELHEMAMKQDTQHKQLQEDMADLKKEIKEEISLIKAEVIKNAQEI
SGLKLQNDKIEKSQLKTQRKIESLEAKNNKAEKLQERLEQNITDYQLRLRNIQEEPKENIKQITAQIIAKILKCTEQEAS
DQIDTAQRIHTNYAKKNKVARDTIVHFVKKSTKEEVFRGAKHCLTTYKDKKIMIYKEFPQSTLNSRRKYFFLTDELKRLQ
IKFRWERQEGLMLTYKEEKVWIKSEEKADDFYRKLKRDLSQKAKLQPPSLEKNPKQAKKRRQDSPKEIQSTLLTDDNPEG
SSDEEEDAVSDRSTNE
>L1-51_XT_gag#LINE/L1 136-1182  [Xenopus (silurana) tropicalis]
MGKAKKKASPMKMTAFYPKTGSQVDAYSSSQDGADSNSSSPTRITEGTGIVAQSLATTNTQPNITLPILKDLLTSLRSDI
QADFKNAMAELNHEVRQLEGRTDHLENKMAELVSSHNELIDANSTLESEVDKLTNKLADIEDRNRRNNLRIRGVPEQIKM
EDLNHYLTEMLQTLLPQEKLEHLLVDRAHRLPRNKNAPPGAPREVILRLHFYHIKELTLNAFRNKQELPDKYTTLQCYPD
LSAHTMKKRKDFAQVTVILREADIPYRWLFPVKLRVVYKDTPYIMDTPQQGNHLLKQWSLLPPQETPQKQPPKKQRLQQE
WQTTKNSHKRAPSISTILEQVDQENNENT
>L1-50A_XT_pol#LINE/L1 1759-5613 L1-50_XT_pol over 90% identical [Xenopus (silurana) tropicalis]
MVNFISLNCKGLNSITKRYLAIKELRNLKADIALLQETHFSRLSPGKLYSKYYPTGYYASSDTKKAGVAIVIHKDCPLQV
TKETSDPKGHYLILEGTLADQPLLIANIYAPNKGQTKFIKKVLNKVATHSTPYVIIGGDFNTPLSQLEDRSHPSPDTSAH
TTSRETRHLFNKASLYDIWRIDHPRAKQYTFYSTVHKIHTRLDYFLVSQPCLRIQYSAEIAPITWSDHAPIQLTLNLMSC
PKRTSHWRLNETLLHEQDSYKAIEQAIKEYFTLNEGTVTSLPTLWEAHKATIRGTLIAITSGKKKAQKQQLHTLLNQLKT
LETQYNQNNSDILLKEMVSLRAELKNLQLKEVEKALVWTRQKFYEHGDKQHTILARKLKDQKLAATIKVIKNNSGQPVYN
PDLIAEQFYNYYTELYNIKKDGTPSSTDLENFFRTANLPKFQERDLELLNQEITLEEITATIKQLPNGKTPGPDGFPYQY
YKLYQHILSPYLAKLYNQYLQGEPIPPSDLTSYLSLIPKEGKDHTLCANYRPIALLNSDLKIFSKILANRLAPLLPRLIN
PDQVGFIQGRQAGDNTRRLINTVEILQRQGHPAVILSLDAEKAFDRLDWPYMFTLLQHLKLHGPYLTALKALYTAPSTYL
KLPGKTNTPIKISNGTRQGCPLSPLLYALGIEPLAANIRNDPQIKGVTIGTEVFKIALYADDVILTITSPHTSLAALHNL
LEQYGTLSGYKVNVTKTEALTIHITDSAAQSLRTKYKYRWKTDYITYLGTKITPKYEDLYTENFIPLASTTRASLHKWNV
QGISWFGKIASIKMNILPKFLYLFETLPVEIPLKYFKEIHTAFNNFVWGYKHHRISKKVLNTSNNQGSLGLPTLYKYYEA
SHIRQILAWSRWSPEMPWVKIENEQFNPYHPNAWFWPSQTCTLPRVNMLKATALTLKVWKKAKLKYKLSSPYSPLTAVLG
NPMFLPLATALPTRPRERISLFVVRDLLNPTSTSILPLETLQQKIPNLRLHWYVYFQLRHFLEPFIRYSQSNSHTQFESL
AHRGLPQKGLISRIHALISDPFLEQGYKHPYMLKWEKAIGSEITMEDWDLIWGNAKTSVTCTKQKENLYKILMFWYLTPT
RLNKIYPEHPQTCWRCGEAPGDVPHIFWFCPLLQPLWDKVQDLLSSLMHQTIPKTITTLLLGRPLTGLTKPQQKLANHIL
TAVRISIASKWKTPTLPTWEELYQRIESNRNFESRIAYLRNTTPAYLKVWSAWELRSLTQRGQGHITAPTGTATDTTPPQ
PNFLQ
>Polinton-1_DGr_pro#DNA/Maverick 10050-10739  [Drosophila grimshawi]
MTTTLTLTGNSSILMANYHPPIELKGNYECALIDFHMYNSIPNVDHDNNLFHIGEHVFEIPVGSYELSDIRNIIIEKMEE
KEPNKLKHPLIESNNNTLQVMISTKEHPIYFNKTNTIGQLFGFNKKVLTPNSIHISDQPVDILKVNTIRIECNIVSGSYV
NAESSHVLHEFALNVPPGYKMSEKPHNLIYFAVNTREIQSLKIRIVDQDGNLVNLRNESVTLRLHLRERK
>L1-64_XT_pol#LINE/L1 795-4517  [Xenopus (silurana) tropicalis]
MATHLKIVSHNAQGLNSPHKRTKAFTYYNSTHTDILCIQETHFSQTSSPKYLSRHFPTFYSSSGPDKTKGVLIALRKNLP
LTFSQQIRDDQGRYLILIGEIFDSPITIATYYAPNTQQNHFFEQFLQKITDCHSGPIILAGDTNTVLDTYWDKSHPNIPN
PQMITDSPTRLKKMLLRLNLIDSWREFHPHGKEYTHYSNPHGTYSRIDHILVSQILIPNTCQAHILTTPWSDHSPTTLTL
TSLWQRPTDFNWRLNDSLLKIKSNFSPIKQAVENYFTENQGSVSSPITLWEAHKTVIRGEIIKIASIKKKQTTEKIKELE
HQLQDTTRQDQITPSPSLKATISRLRTDLDLLLSQATEKQLQWTNQRFYTQSNKIGTLLARKLNQPTHQTPPPTTIRTRT
GYLTSNPQKILQEFSTYYSTIYTKTKPFPSSTANKLLSTLQLPTLSAPQSESLDACITHEEVTKAIKDLKIAKSPGPDGF
SGLYYKKLTALLTPHLTNMFNAIRLGETCNEESLKAQLSFIPKPRKDHLECANYRPISVMNIDIKLLTKILADRLNKFLP
GLINSDQTGFILNRQTTDNIRRTLQLIHNFQITKQQGMLLSIDIHKAFDSISWDYLYFILNKWGIGPHFITILKSLYRFP
KAIPKWGPYRGNPITIERGTRQGCPLSPILFILAIEPLAELIRQDKNITGPQIGQMMHKQCLYADDILMTITKPLTSLPN
LIHLLDAFGNISGLTINHSKSEALNITLPQQTIKLLKLNFDFKWQNSTIHYLGVNIPSHIPTLYQHNYPQLWKMARENLQ
SWSKMDLSWFGRIHAFKMTLLPKILYLFRTLPIPIPDQDLKTMQRKIFKFIWADKHPRITRQTMYRSKQQGGLSVPQLQN
YYIAAQLVPLIHMHALNPPKWVTILKHQLYPISPCALLWSPPLKRPKYPDPFLTHSMSVWDKYKHSAKLMSPTLPATPLF
GNPLFPPGLSFAAFQWWMSKGFQFIYNFYSLSGLKTWPMIQNTHNPPPSEAFHYQQINHFIRTINKDNSTLTPTYFETVC
IKYPYSKGLISNLYNLLLSIHSQDPLPYTQAWHKDLNTTITDEXWTQIWQTTASCSRNTSLLETTYKVLMRWYMVPSRLH
KINPQLSKDCFRRCGQTGSMIHIWWDCPNVQRFWSRIYNIIYSVTQINLRKDPQNALLNVKIPNLNNHTRSLITFIFLTA
KITIAKFWKTTQIPISHFKSKMNWVXXNDQLVYLQINMISS
>L1-63_XT_pol#LINE/L1 1719-5528 via tfasty with L1-10_DR_pol, 2 stopcodons. [Xenopus (silurana) tropicalis]
MVKILSINAKGLNSIAKRCLLFKELKNAAADIAYVQETHFPSQTSAHLTSKFYPTTIYASGPHKKAGVAILIHKNCPFIT
ETTYKTQKGHYLIIRGTLAGTPISLVNIYSPNKHQIRFLRKVLGKNQHLLAPYTILGGDFNLVLSQDRDRTHPSPDKTST
LMSKEFRQLMRQHILQDAWRINHPRDRQFTFYSNPHQIYSRLDYFFLSHSCLNLVFCSQILPISWSDHAPVILDIKIGPP
PHKQPHWRLNETLLADTQTCSQIEEALKEYFRINSQTVSNTAILWEAHKATIRGNLISIASAKRKDQQSTLAQLSKRVQD
LQLQHQATKSPTIWQKLQQTKEELQKYRMKEIDKTLKWSQQTFYQQGDKPYTLLANKLRERKAHTTIVKIKSPSGNITHH
PEHIANHFQKYYTDLYNLNLTGTSHTQTPTIALQEFLSNTNLPKLNTEDIKLLNAEISTEEILTTLKTLPNGKTPGPDGF
PYVYYKTFQKIFLPHLLKLYNKFLKGTPIPTTMLTSHLTLLPKEGKDPSLCSSYRPIALLNSDLKLFTKILANRLTTIAP
KLIHDDQVGFILGRQAGDNTRRTTNILEIIQRQNKPALLLGLDAEKAFDRLSWPYLFNLLTHMGFRGSFFTAIKSIYSNP
TTTLKIPGATGKNIPISNGTRQGCPLSPLLYAISIEPLAAYIRNQPDIKGITIAKKEYKIALFADNVLLSLSNPQISLPI
LHDTLNIYGKLSGYKLNIDKSEALPLCMPTRMKEALQSKFRYKxKNDYITYLGVRITPKYTDLYKQNFPPLIQQTKVSLQ
KWLNYPISWFGRITAIKMNILAKFLYLFKTLPILVPAKILNNIQAAFYKYIWGNKRPRILRSVLVTSRLQGGLGVPSIQK
YHDAAHLRHISVWTTPNNTPLWSQIENDHLQPLHMGALLFNPCPHINPPKTTLCSTKTVLQIWRRLKHKHKLAPENSLLA
PVFHNPLFPPGTQKSFYYNWKAKGFFKILDLVTPNTVQCLQYESISDKNPEIRLILxVSTIRHFINRFVRVREGPYLSPF
ETLVKKGWPQKALLSNIYKILLSPPDMGTPSHKYMQQWERDLNLTIESEVWDSIWNNAKQMVTCVKQKESIYKIILRWYQ
TPVRVNKFSPSVPNTCWRGCQDLGTLHHLFWTCPHITQFWEEVREIMEQVTRRVIPRDPLTFLLGKPLKDIPKCAQKLLN
HILTAARIAIAASWRKTIAPSIAEVHKRLVRNMSFENTIAQLQNKMPKYMDIWAPYELLAKPPSTSTQTT
>L2-22_NV_pol#LINE/L2 2-2908 [Nematostella vectensis]
NGRSNLILGLSETFLDESWTDTELAVDGYSLVRADRTYNSGGGLLVFIPSHISFKRRVDLEFEGIEAIWLELLFPRSSPC
FVCFIYRPPSSTSAYIALLDEMFSHASSAISQQVVVLGDLNFDLLERPLPAPTKQYLSIFDSLGYQQLITKSTRPISNSL
LDHIFVSSSDFVIEADTVSNTASDHLPIFVAWKLRAGYTRPTGHKVLRFRSRKNFCTESFMHDLSLVPWSTLDIYDDVND
ALDQWYKLFNDILTVHAPIKEHRIKRPLKPDWFNAEISAAIKARNCLHRIATSLKTDTSWSEYRRARNHVVHLIRKAKKT
FYNDAIKNNLENPKNLWKIIRNISPSKHVNLPNRLTVNDTLYEDTFDIANSFNEHFSNISSQVSIDAVPEFPDWSVLTNF
INSKHQPGSYFSIPPISEDFVLNSLSRLDIGKAAGLDELNGFFIKSAAPEIFRSLTKILNLSISSCVFPDPWKSAKVSPL
FKDGSLFDRTNFRPISVLCILSKVLERHTHTSFYYFLTSQDLLTDFQFGFRWFRSCELATINLSDSILKNMDNGLLSGML
LIDLKKAFDLVDHNTLLLKLGLYGCDELTLKWFKSYLSGRTQKTCFKGVLSNALPINVGVPQGSILGPLFFLLFINDLPL
FLSSDFVTDTTMFADDTTFLISGPSVPDVELKLNKLAADVHKWATLNRMVLNTKKTKSMLIGSHQKISNLAESSLSVTLN
SCPIEQVNSARVLGVVFDNHLTWEPHVEHLCKKINSRISLLRRIAPFLTPAGAIHYYNACIHSQFLYCASVWGNCSQTLQ
LLLLRSQKRAARTILSADFSVPSVSLFSRLNWLPICDLIKQRKLLTLFSILINPDSPLCLRSKFSFVSHERRTRSSTSHN
LVLPQPRTDAGKRTFSFSAVSLFNLLPPSLKQLADSRILNPNQLXNVTSLAKKKVRDIFHSHLNSVSHLEQLFCHTCRFY
IDCRCYFS
>RTE-13_SP_pol#LINE/RTE-RTE 493-2161 Fragment [Strongylocentrotus purpuratus]
MGRPTQTSMTDTNKQRPPVPSSSFVPDQGGGPIKQGAGGAKNPWVRTGHQWKLNIATYNVRSLLQEEILLELEEELQGIK
WDIVGLGEVRRRGEELTVLKSGHHFYHIGKKNKSEAGVGFLVHKSIAGNISEIKGINERLAQITIKINKRYKIKIIQVYA
PTSTHDDEEVEKLYEEITDVMKCGKTQFTIVMGDFNAKVGKREEGEESTIGPFGSGQRNDRGDRLLEFAISNKMKIMNTF
FKKGASRKWTWKSPGGNTKNEIDFILTDNPHIIQDVKTISKVNVGSDHRMVMGKMKINTRLERQKLLKPKQSSINLEKLK
EKRTEFQLELKNQFQLLTDKCTDEEGNRSLETWTDLLVEKTQETAIKIAGKKPKTRENKISESTRKLMEKRRNMKAEGIG
IQNVEYVETCKTVRKKLREDIRSYNTTMIKSTIEENRSLKKTYKKLAHGKQKITSLLDSNGQEITDQDQILQRIEEFYEQ
LYNSNKETEDPGEPQEEIPVVTDWEVQHAINQMKRGKSPGPDNILIDTIKEGGDTITEELAKLYNACMQTRRIPHQ
>RTE-12_SP_pol#LINE/RTE-RTE 3-1328 Fragment [Strongylocentrotus purpuratus]
KEATMIILHKKGDKRDLKNYRPISLLSNLYKLYTKIITNRLEKILDNNQPREQAGFRRGFSTMDHIHTINQLKEKCQEFN
IPLCVAFVDYEKAFDSVETYAVLKALQDQGINNAYIKILKDIYSDCYNTVRMHKASNKIMIRKGVRQGDTGSPKFFTACL
ESIFKTLDWSSKGININGENMSHLRFADDIVIISHNLNDLEIMLQELDDASRLTGLKMNMKKTKVMAGSAKDPKQIQVNG
TKMEQVEEYIYLGQRFSLQDKNQDNEIRRRIKAGWQAFGRYSTIMKGKLPLCLKKKVYNQCIIPAISYAAETWTLTSKME
RKLAASQHNMERSILSITYKDRKTNKWIREQTKVQDILETVKRRKWNWAGHISRRNDNRWSSAITHWTPYEGKRNRGRQR
KRWRDELQQFWGQTNWHQQALNRGIWKHHAEAFILQWIDNG
>RTE-14_SP_pol#LINE/RTE-RTE 335-3208 via tfasty with RTE-13_SP_pol, 4 frameshifts and 5 stopcodons. [Strongylocentrotus purpuratus]
MEGCNKTGQKSELNICTYNVRTLRTEESVESLLDELEGFKWTVIGLAETKDKEKDxHNLKEAHGSTTGKNRRxQNAKGIG
FLIHNKFKDYVKEVKSYSNWVAAMKIQLAGKDEMCIIQVYAPTSYYDDITVEELYEDIKKKIGHTDNSGTYTVRMGDFNA
xIGQREKGEENFMGSFSYGERNRRGERMIEFAMEHKLKVNNTYxKHKNRYWTWESPNGVTRNQIDSILARIVxNCGDITN
VDISSDRRMVGVNISTNTKLASQAIDSFINKRKTRINIMKLKEKKEEFQLKLHNRFDGLELEDMDIDERCDMVTSAMLEE
AKSVAPTEKRKIVRSEEDKEIEELDQRRKEIRLKESKTTTEKVEYAEIVKLVKKKRRRRNRRKTSKLILETLESGRGPKT
IQKMASKKXRMSKLKQKDGNITSERSELLEICADFYQELYGSTKKQPKDHIDISSRXSDIPPILQREVEEAVNSMKDNKA
PGNDEITSDIIKQGGEETITQLLKLFNQILEKQQIPTTWKEAKIILLYKKGDKADVKNYRPISLLSHLYKIFTKVIQNRI
KDILDTNQPREQAGFRAGFSTTDHLQAINQLIEKANEYQLQLCLGFVDYQKAFDSIEHTDMFDALRKINIEEGYVRILED
IYTNAVARIHIDNDVSREVKIQRGVRQGDTLSPKIFTATIEEVFKKSHLNGGINIDGETLTDLRFADDVALISTSTKDLE
DQLTGLNRESKRIGLTMHKEKTKYMTNYDTDENIEIEGRTLERVSSYKYLGQTLKMEDTTKEEVMMRVKAGWMNFGRYKD
MLTDKNIPMSLRRRMFNQCILTTMTYGSETWSLTKDLEQKLVTTQXAMERKMSHLSLRDKINHKVIRQKTKVKDIMEKVR
ESKWRWAGHVARLQDNRWTNRLTEWQPRVGKRRRGRQKRRWRDDLTSYMGTAAWTRTARDRREWKFHEEGFVQRLDEL
>RTEX-1_ACar_gag#LINE/RTE-X 153-1598  [Anolis carolinensis]
MGNKKNKKKRTRTSPETLKHQKPSKQLKIDDLFVETVSTPELNSLFTDNSFLSLDKENRNSGNNSTAYQEGVSLDLCRGD
TPGTSSLITELKQPELLQQTNSTSALMQQCLLTAKTVTFIFDKLKNVANQIEQLRLSFDSFVQRNTALRESTVQADGMGP
RREATDEKPCTKATRGYSLTSTKCNRILQANQIMLRIAHNNINKGRWRSFRAIRTSLGQLLHIHPQSVDLLKVEWLPQVS
ADKKIVMTFEQSTLPSMLMKMKLFLLKFQIAPMRVFRDLDISPLITPMHGDDMPVEVGRPSLLAPRETSGRNRPQSSPAK
ADSKPTQNQSTILSSATCGDQRDIDFGLDHLETVATTIGDMVEPLVGLMSTDESPQAEMDLEVGPVNVNDLLELNEEDET
PTLSPIQVLVPRRDDSRPPIHDLPPREGMSVPSTSRQNNTTAEEIQQLQHLRQTRKEKRDPHNNCVFNGDIGGIVPASDT
N
>hAT-1_STu_tp#DNA/hAT-Tip100 655-3147 [Solanum tuberosum]
MNPVISKLKRKRKVDNLIKSQKGALDKFLENNVKIKSKKVGECSLEEQVTNLVEVELDNDINQKEEEGEEISEKSDVDSQ
ENQELINELNNHTPKNIYDPSQWNIVDTKLRDLLVEKGPIRITDTCFPKDKFLRHFSTTYYFQKLANGERHERRWLVYSK
DLNKVFCFCCKLFNTTFNAKNNKLANEGSRDWKNLTTKLRTHETTNQHIINMSSWIDLEFRLRNNKTIDKNIQDQINRDR
EHWKNVLSRIISVIKTLGRNNLAFRGENEKIYQENNGNFLSLIEMIAEFDPIMQEHIRRIKHDEIHNHYLGHNIQNELIN
LLASEIKNKIIEKVIKTKYFSIILDCTPDTSHQDQMSFIIRSVDISATPINVTEYFLEFLKVDDTSGKGLFEVILDEIKC
IGLDIDNLRGQGYDNGSNMKGKHQGVQKRLLDINPRSFYTPCGCHNLNLVLCDMVNSCTKAISFFGVVQRIYSLFSSSTK
RWKILKDSVPSLTLKSLSQTRWESRIESVKAIRFQTPQIRDALFKLEEVSDDPKIKSEANCLAIFELENFEFLLGMTIWY
DVLFAVNSISKSLQSKDMHIDVAIDQLRGLVSFFKTYREEGFTSAMISAKEIALEMNIEPVFRKKRVIYRKKQFDENVDN
EITRSLEESFRVDYFLYIVDQAIFSLQNRFEQFEVYENIFGFLFSGKKLRSLDDENLKKYCLNLECSLKHNTHSDIDGLD
LFSELKVLREIIKVEDNTLIEILNQIKRLDSFPNAYIAYRIMLTIPVTVASAERSFSKLKIIKSYLRSTMSQERLSGLAI
LSIEKELLEEIDYTKIINNFASQKARKIDLK
>RTE-13_BF_pol#LINE/RTE-BovB 357-3368  [Branchiostoma floridae]
MTGQREPGTSSQTVGPDMSRLSTFKPLVISTYNVRTLYQKGKTHQLFMGLNDAGVDIVGIQEHRLITQSPTEELWSDDKN
YVLIYSSATAQRLGGVGLAVSKHIYKCLQSVNSVSERILTVTFHGNPQLTITVIYAPTESASPADKDDFYSTLKDHIEMV
KKHDEHLVIGDFNARIGHDSHVSHPVATGPHCYYSVTNDNGDRLVNLCQEHKLRPAQTRFPHPRSRLWTWMHPGGSTHQL
DHILINGKWVNSLRNCRAYNSVELDSDHRILSVLFVTSLRKSKGKPCRRPKFNWRKLREAHTREVFQMELSNRFEALKCD
EVSSPITERYACWEKTVAETAEKVVGRCKSCGMPSWVSAKTLELRDQRDKAKKRFLLAKTRQSKETWRQLNTSLNESYKR
DEVAFTEQQIEDLEEADKKGDHLSTWKIINSISGKNRRTNQKVKKRDGTAPSSDNELLAEWREYFSELLNNVSVPQTSGL
PPPADQDLPICVDPPTLEETVRAINSMKNNKAPGLDCAITAEALRGGGDVMARAIHAFCKEVFVTLTPPDQWTTNVIVPL
PKKGDLSLMTNYRGITLMSIAAKVYNKILFMQIRGHIDPILRSNQAGFRRGRSCAQQTHILRRIMEAYQTHQLPLVITFI
DFKKAFDSIDRKVMLAVLRHYGIPLTIVNAINVLYNNSKSAVMVDGNISGPFQVTTGVLQGDVLAPFLFIVLIDFLMRRS
TEDIDSGIVTHPRQSRRYPARILNDMDFADDITLLESSIPKAQEQLNRTAAAGTQLGLVISVPKTEYMTINCSQQPPLEV
YGQPIKNVTNFRYLGSMMASSKNDLTRRRALAWTAFWKLQKIWSSTSLPTSRKIQLFNVSCVPVLLYGCESWVLSSDMEN
NINSFATSCYRIMLNIKRLQRVSNSEIYRVTNTQPLICKVRQRQLRFIGHALRMPLEEPLRTYALYVPSHGKRRPGRQKT
NYLTYIQNLLGDVEGDLNPTAIAALAADRLRWNRIVTDCTAAD
>RTE-12_BF_pol#LINE/RTE-BovB 1-2898 fragment [Branchiostoma floridae]
IATWNVLSMKQEGSALLVANELARLDITVAGLTEVRWPGSGSCRANDYTYLWSGREDGLHRQGVALALAPSAHKALSFWK
PINNRLLLARLRHRHGMISIIVAYAPTDVAPAEEKDDFYSKLSALVANISRHDIIWVLGDFNATTGTNTTGYESSLGPYG
TGSRNDNGSRLLEFCACHRLRTERSFFPHKQIHCMSWISNDGHTTKEVDHILTNSRWHTSSNCRVYRSAQFGNADHRLLS
MTVALYLQKDPKSAQQRKFDIARLQSPDVSADFQLELHNRFEALLDISDEDHGDPAKIWDGFKHNLTEAATKTVGFTRSR
KKRAFLSMETLKVVELRRQARLNGDISEYRRLNGSRNKLLQRDKQNWLENTAKEAEAAARAGNQSVLYKTLRTLSGKTTP
PTANVKALDGSDLETPEQQLERWREHFSTLLNRPPPPPCNELDAMASMAVEDDSISVDPPSLDEVEKAIGKLKPGRAAGA
DGIPPELLLKGGPAVVAWLHALIVSIWRTGNIPTDWRLGVILPFWKKGPKDNCGNYRGITLLSVPGKVLAHILLARLRPL
LLQKQRQEQSGFTPGRSTVDRILTLRILAELRREYREPLYATYVDLKQAFDSVDRAALWKILKILGVPSKLLGLLSSLYS
DTVSCVRVNGQTSDVFEINSGVRQGCVLAPTIFNTAIDYVMDRTVTQSSCGANYGRVRITDLDYADDVALLAELLETLSI
ALQHMDAATKPLGLMISWQKTKVQSLCDYQPPPENQVINGQEVEAVNKFSYLGSTITSDCRCIADIQVRIGRAAAAMANL
ANIWSNKQLSLQTKLNLYNSLVLSILLYGSEAWTLTASWEQHLDAFDTKCLRRILGLHWYDFVPNATVRQMTKQPPISQL
IRSARLRIFGHLARSSPLSEPARLILEPTPRWRRPRGRPRMKWLDQLTSDLAAVNMDLPTAWQAAQDRSFWRRCRGATLL
GASGL
>RTE-17_BF_pol#LINE/RTE-BovB 3-1718 fragment [Branchiostoma floridae]
ETTVSQEDHLSESELEECLKALKSGKAPGYDKIPIEAYHHSPAAKQELFRVVNLIWDSEIIPPELVKGIFIMLYKKNDRN
NYSNYRAICLLSHAYKLLSAVIARRLHVQLEPLLPDSQAGFRPARGTRDNVCILKWTINMLLRESKPAVVTFIDYAAAFD
TESQVFLDEALSSVGASLKVRRIIQAVFSVASGCVCVTSPNGNQELSEPFKISRGVLQGDIFSPVAFIAGLMRIFALHDN
PDSGVTVGSPPHQVTISRLEYADDAGLLDESVQDASERISAIAIGSRNDAAMEISVPKTKAMHIHKKDRVSKTTDAEIAA
LNLKHRCPECTRDFSTKRGLAIHRSRWCLHHPSTANIRSRAGSLADKEVQRRKRLAKEEERDNVVLLDQQLENVHTFDYL
GSRMQCDGDQKADVKHRMDIAQSRFSSMHHIWRDHRLPQRMKLRLYKSSVCSTLTHGCEAWDLTQDVTRMINGFNSRCLQ
VITKKHFRDTATHPDFNLVAAIRRRRLRYLGHVLRMDPSRLVRRTLKAYVCGGENPPEGSLLMDCEXLPFELVARQARNR
QMWNAKVNKIN
>RTE-2_BM_pol#LINE/RTE-RTE 337-3151 via tfasty with 72133877_Spu_pol, 3 frameshifts and 3 stopcodons. [Bombyx mori]
KLYIITFNVKTLSSYEKLIELTESLKSIKSDIIGMAEVRRLGEKIEEYEDFILYYTGQTPGQFGVGFLVRKNLKVNIENF
TGLSERVAILNLQFHGQKLSIIQVYAPTEAANEEDISYFYETVRRARELAHKDYIIMGDFNAKIGKPRHEEFLITKPFGL
GIRNDRGQKLIDFALETKTAIMNTYYHKKPNRRWTWRSPGGAYKNEIDYILSNIPQKFHNVEVLNINYPSDHRPVRATIS
LEKIKISRTRYKTNQCASLKYESEILRFRLNLQLHLLRADDQNLKDTDNIQTQYNKITNAISRSLEETHKEHNSYRHKKI
SLRTEKLMTRRKELQKTKNKTRSIRNEISALYKLISKYIRQDYAKYRQDTITKHLQVSGSTKKAYKELAQNKTWIEGLKS
SGKQSIITNRNDIINMATEFYKSLYSKKTSTYVDITPSSNISNNENVQPITESELITAIKNLKTDKSPGPDGIXNEALKA
AGHSIQLSFLNLVTPPQWSESNIILLIKKETQxHGNYRPISLPSTVQTFFSIIxRRISSALEKGNPEQAGFRKGFSTRxP
HHTLELLKKYQEKQRTLYIAYIDYQKXFDTVSHDSVWKSLKNQGVNDKYIQIIKNIYKTNTSRIKLESIGPRFSIKRGVR
QGDPMSPKIFIAILESIFRQLDWKNLGLNIEGKYLTHLRFADDLVVLAESSSELQYMVESLHRASIKVGLEMNTTKTMVM
TNSARKKITVGNELLKYTDHYIYLGKQISFERKSNEMEIGRRIQHTWNKYWNLREVFKSTLPIYLKTKVLNSCILPCLTY
GCQTWKFTSKANNLIVSCQRGMERSLLNIRKIQKIRHTKIREKTKSIDALEYARNLKWKWAGHVARLKDQRWTARITAWE
GPQGKRKKGRPISKWEDDIKAIAGPRWIQVAQNRTKWKDLEEAFTMFNGFLPNISEEN
>RTE_Mdo_pol#LINE/RTE-BovB  1154-4042  [Monodelphis]
MKIRLPLSKDRYATIISAYAPTLTSTEETIEQFYSDLSAVLHSVPTNDKLILLGDFNARVGQDHERWKGVLGKHGVGKMN
NNGLLLLSKCSEFELTITNTVFRMANKYKTTWMHPRSKQWHLIDYIIVRRRDIQDVQITRAMRGAECWTDHRLVRATLQM
RIAPRHPKRAQTVRAFYNVSRLRDPSYLQTFQSCLDDKLSAKGPLTGSSTEKWNQFRDAVKETSKAVLGPKQRNHQDWFD
ENNTAIEDLLSKKNKAFMEWQNNPNSAPKKDRFKSLQATAQREIRKMQDRWWEKKAEEIQRFADTKNYKQFFSALKTVYG
PLKPTTTPLLSSDGDTLIKDKKGISNRWKEHFSQLLNRPSSVDQSALDQIPQNRTIEQLDVPPSIEEVQKAIKQMSAGKA
PGKDGIPTEVYKALNGKALQAFHIVLTSIWEEEDMPPELRDASIVALYKNKGSRAACDNYRGISLLSTAGKILARVILNR
LLSSVSEQNLPESQCGFRPDRSTIDMVFTVRQMQEKCLEQNLSLYIVFIDLTKAFDTVNRDALWVILSKLGCPAKFVKLI
QLFHVDMTGEVLSGGETSDRFNISNGVKQGCVLAPVLFNLFFTQVLRHAVMDLDLGVYIKYRLDGSLFDLRRLTAKTKTT
ERLILEALFADDCALMAHQENHLQTIVDRFSTATKLFGLTISLSKTEVLFQPAPGRPTNQPCITIDGTQLSNVNTFKYLG
STIANDGSLDHEINARIQKASQALGRLRCKVLQHRGVSTATKLKVYNAVVLSSLLYGCETWTLYRKHMKQLEQFHQRSLR
SIMRIRWQDRITNQEVLDRANSTSIEVMVLKTQLRWSGHVIRMDPQRIPRQVFYGELSAGLRKQGRPKKRFKDQLKSNLK
WAGXTPKQLELAASDRSSWRTHINHAATTFEDERRRRLAAARERRHQATTAPPVTTGVPCPMCHKLCASAFGLQSHMRVH
RR
>RTEX-1_DR_pol#LINE/RTE-X 906-4364 [Danio rerio]
MTLSISLWNIQGLKSSAFGLKSLNTEFQANIKNKDIIILQETWSKTNTTTHCPPNYREIILPSQKLNTTRQGRDSGGQII
WYNSKLHKYIDTVKTGKYHAWLKIHKDLLSSQKDCFLCAIYIPPSESPYYSEDMFDTLEKETSHFQAQGHVLICGDMNAR
TGQQPDFTNAQGSKYINSNLPGIQTSFSHLHRNNHDHIVNKSGKELLQICRSLGLYIVNGRIRGDRLGRFTFCSPLGNST
VDYMITDIDPSSLRAFTVRELTPLSDHSQITLYLKKTITNPCTQPNKLFNIRKPYRWAENSAEDYQNAVNSPKTQQILDN
FLVNAYAHTKQGVNMAVKDINNIFESTAKQAKLKVKTRQNNPPKNDKNWFDQECLSIRKHLRNLSNQKHRDPNNAEIRLL
YCETLKQYKQTLRTKKAQYTQKQLTTIENSINSNQFWDNWKNLIKNDHEELPIQNSEIWETHFQTLFNKVETDTNPKQNQ
ITKTLATLESTIKDNQNPIDFPITIMELKDKIKSVKPKKASGPDGILNEMIKQTSPKFQSAILKLFNLVLSVGHFPDIWN
QGLITPIFKNGDKFDPNNYRGICVSSNLGKLFCSLINARLLDFITTHNVLSRSQIGFLPKYRTSDHIYTLHSLIEKHTVQ
NKGKIYACFIDFKKAFDSIWHQGLLYKLIESGIGGKTYDLIKSMYTESKCGIKISTKRTKYLSQERGVRQGCCLSPTLFN
IYINELALSLERSTAPGLDLHDSQIKCLLYADDLLLLSPTEQGLQQNLQLLDQYCQTWALTVNLNKTKIITFQKRARAQG
TQHTFTLGTNQITHTTQYNYLGLNITSTGNFNPAVNELRDKARRAFYAIKRQCPIDIPVQIWLKILESVIEPIALYGSEV
WGPLTNPEQDLAKWDKHPIETLHTELCKNILHVHRHTTNNGCRAELGKYPLIIKIQKRAVKFWKHLKLSDPDSYHYKALQ
DRELSRRADPLSQLAQSFRVSETSPEELNTLLPLTQITHQIKNSYTHHWDTQTQLQSKMQCYLALKRQYTLADYLHTVTD
KGLRNTLSRYRLSGHQLAIETGRHRQTWLPVEERLCPHCPQQPIETELHFLTECTKYSEIREKFYPKLTHTHKNFESLSN
NEKLPILLGECVCCCVLAAQFVHSCHRLRNPQ
>88175402_Cgl_pol#LINE/Tad1 gi|88175402|gb|EAQ82871.1| hypothetical protein CHGG_11047  (AA 435 and up) [Chaetomium globosum CBS 148.51]
QSLLNDEGLKDFAVLAISEPYARLIEGSVTTVPMSHHNWTKLIPTTRRETTWPIRSMLWVRSDIEVEQIPVPSADLTAAR
IRLPDRAVLMVSVYVEGGSDEALEDAMREIDRLIRRFRNGTGTRTDIILAGDFNRHDQLWGGDDVSPRRQGEGDRIINLM
DEHSLCSLLPRGTKTWQSGDIESTIDLVLASAELADQLLRCAIHPCDHGSDHRAIETAFDTSVEDRPSETRFLFKNAPWA
EIRTRVAANLERIPWDGNVQQQTDRLMAAVTEAVYGLTPKAKPSPYAKRWWTTDLTRLRQTYTFWRNQARSRRRIGQTAP
ELEQRARMAAKEYHDAIRRQKSSHWNDFLADDANIWQATKYLQTGSGTMGDKIPPLVRPDGSITEGKAEQAQELLTAFFP
PLPARIEDEGQRPQRAPVHMPDLTMEEIEQKVLSAKPWKAPGEDGLPAMVWRQLWPVVKDRVLHLFRTSLRDGDIPSQWR
NAKIIPLKKPGKSEYTLAKSWRPISLLSTLGKILEAVIAERLSHAVETCGLLPANHFGARKRRSTEQALLLLQEHIYKAW
RARKVLSLISFDVKGAYNGVFKDRLLQRLKARGIPEPLVKWIDAFCSKRTATIAVNGFTSGRQELPQAGLPQGSPLSPVL
FLFFNADLVQHKIDANGGAIAFVDDYTAWVTGPSAESNRTGIQAIIDKALDWEKRSGAQFEGEKTAIIHFTRNMERFSEQ
PFSVKGEVVKPKESAKILGVVMDRELRYKQHIARTAAKGLAAALALKRLKMLSPRTARQLFVATVAPVMDYAANVWMHAC
GEKALSWLNRAQKIGALAITGAFRTAATAVVEAEASIYPVRERHAQAAASLWINIHTLPGTHPLAMKKVRTTVRFVSPLQ
KIARVAEGVRVDRMETIQEYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSVKKGIVGMGGLARDTLFNRTSET
VTNYAVVLGTREEQNPYTAELAAIAMALEKLPASICHRHITVITRNQSALAAVGQPRQQSGQSIIRQIYDLARLHRQRGN
SVNFLWIPAEIDFALGSDAKAAAQRASKQGRTPDSQIPQAKSTAMRLAMERQRATRVLPVSVGKFSKAMDAALPGKHTRH
LYDKLKRREACVLAQLRTGMARLNGFLSRIGAVESDLCACGQARESVEHFLFRCVRWTALREDMLQCTVARRGSLSFYLG
GKAPSDTRHWSPDMKAVRATIKYAMATGRLELNEEESLDQSQ
>RTEX-9_BF_pol#LINE/RTE-X 67-3000 [Branchiostoma floridae]
MDKVSPNKFGRLITDLCIQANLRILNGRVVGDLQGKFTCHQPNGSSTVDLMICSKSFLQQILSFRVNPLTVFSDHCMIST
LIRSKPPIHTFQEKYKSSHTRPLPKQFHWNENSAQTFLLSLSQPDIVKRLVALKDSNNITSAAEIENYVSEFSSILREAG
NKSLCLKRARKRPPKRQNKKWFDKTCIEMKREMKNLAYLLEKNPSHPEARGSFFRKKKEYRKLLKKKKRDFRQQIMNQLS
TLQEKNPSAFWDLVNKLKPEKAQENSQISSEDWLNHFSKVDKSSDGNHDSVAGPFIPVNDQSPFPIETENXILDSIITAD
ELDRAIANLKNNKSSGSDMIRNEMLKCGKSIFRKPLLHLFNLCLQNAYFPEEWSLSHIVPIHKSGDTSLPDNYRGISIIS
CLGKLFCSILNNRLSNYAEENSLFKPQQAGFRKNFRTTDNLFTLNTLVSKYISRNSRLYACFVDFSKAFDSVWREGLLLK
LKKLGIGGKFLLTIKDMYSKTTNCIKTNSGLTDTFVTHCGVRQGCNLSPTLFNLFISDIASEFDHSCCNPPVLHCMNVPC
LLYADDLVIFSESQRGLQSSLSRLEEYCKSWRLKVNLKKTKIVVFTKGGRLPRDCSFSFNNNVVEIVSSYCYLGIIVNSA
GTFKANHKYLYNKGLRALFGVRQSLEKTDAPLSVKNKLFDSCVKPILLYGSEIWGSFKSSKSCPIESVHLKFCKQSLNVP
KTASNLATRAELGRYPLHLEASLNAIKFFTRVCLNVPADSLQADALLCQLELDSLGSKCWASGVRKTLEECGYAFVWHSP
HSIVSKVPSIISAIQQRLKDIYFQTFLCEIHNDNKGKCAKNKLRSYRLFKSTYNEEEYLKIPNERQRSIITKLRISCHKL
RVESGRHNRTPLEQRVCQFCNLNKIEDESHFLLDCSLYSNDRSILFSHIIGKFPRFEYMSSVEKFIFLMSFDQTTLYKHI
SSYIFNITKKREEAEQMY
>I-1_AN_gag#LINE/Tad1 103-1584  [Emericella nidulans]
MEVDISPPGGTRPATPLLGENSDPPSGPTTPTPLPRNSLKRRALFSPQKTPTAAPVPVSHTPQAPSICEQVGMVADDQLA
LLHDWKLAMTSLAKALDLTVSSLQGRPRDLARELAARFVTLAKQDSPQQISQMPVVAPPQPPRQMEQPNHPPTPEASKSP
LNRQTSQPTTWASLTAPRTGQGNWQTIAPEHHMQAKQTAQRRLKQSNKTDHRIFLRLPASSSLRAIGPHGIRVTLAGKVP
DGITQVQVISTGYAITTTEQGKAFLLSEKAASLAGDGYFEIPTEYHQVIVSRIPKQLWSLDGWIDTTIADISMEAERITG
IKPLMAKLSKHPVERDSITAVIAFPKKLQHPLQLFGLSGLSRPTRPKQRPLQCTRCHRFYDTRACRSSERCISCGSSKQE
HNCRVQCINCCGPHAADFQKYPARPHIQRNTITRLSKDALAAICKAGRLAFQQEQKKAEESSKQQTDNTHTTNQPTRQLT
QELLNQTLTSPEL
>MARY2N_pol#LINE/Tad1 gi|12862434|dbj|BAB32470.1| Pol-like protein Pol-2 [Tricholoma matsutake]
MSWTRQRNLPSYEAISYRGEPCNDLDSLWDALDGSYNAASDRVVDLSILDELDPAPERAWIPFSVMELKEALNACSSRSA
PGPDHVTWLHLKHWCSNPEVAGLITRIAEACITAGHWPAHFKESLSVIIPKPGKPNYSTPKSFRPIVLLNTLGKLVEKML
SRRLQFDGVAHEAFEQNQFGGVAQRSTEDAGIYLTHLVRAGWAKGLKTSVVAFDITQFFPSLNHQVLLEIISRSGFPAQV
VNFFRSYLVGRKMTYKWNAFSSGPFTADVGVGQGSALSPVLSALYLTPIMKLFRRSDIGRDVDLMSYVDDGTLIARSPQL
EDNIPLLKTAYGWIFQAFTSLGLVLKHNKSEIFHFSRARRFTPLPIDLGFAPYTGNTPLKPKVTWRYLGFFFDRKLSFKE
HTRFYSTKALTTARAMGMLGNSVRGLTPMQKRLLYRSCVVPIMPYGLRLWHFKGARVKGVIKTLAQVQSIAACWILGAFR
TTPIGGLESIAGLLPMQLLLRRLVDRGVFRTSLLAPSHPLRAILGPNHVGTTHSHELGLWGGNVLDTLTLQGPSVVSAAA
LALVPGDEFDPFFFFFFFGSEFITRGSNAVCGAGYKLGYYFIYAFPSPISHSGPRFSHFRQAVPQTLASQPGKAIIWRGR
PPLPKLAIRSPPGANGPPATCPTEARPGAAVLIHRKSPLVGGITVCVFPANED
>I-4_AO_gag#LINE/Tad1 163-1392  [Aspergillus oryzae]
MAIPPAGVAEPHPTNTEETPRIFTQEVFRPRIPLTRKRRKRGVDTEGNEPISNPEFATCGENNGRVTNQDVRQFFTSFKE
ALAHQTEIIEAARAEIRELKAEQQLLQTQNVELREEIQALRAKTEAQQLNTPPTKSWAAVVAGNPVPDPKTTVPRPRNEP
NCVRISTAPTLDEEIDNDRFSRFLPTDAANTHIRTALLNAEPTKEVQVAGIGPTKTGYVIRFRDAQSAETARNNTEWLEE
LGNNTKVVKPRFGIVVHRVPTEDFNLEENKKQGIEKIMIENDLYEKEFRVEDIAWLKKRDMPMGKSASMGIWLDSPEAAE
WIINNGLLVGQRFIGSIEPYRVEQKRCRRCQQFGHLAWSCKKQVKCGYCAREHDQRHCFPGIRPKCSDCNGEHPTGDRMC
QAPLNPRSSQ
>RTEX-1_SP_pol#LINE/RTE-X 1159-4719  [Strongylocentrotus purpuratus]
DNDGYSQLGVACWNVGGWSDTCSIRKSILVKCDFDIICLVETHLTKSQSISVPNYVWLGHDRLHLHKNARKGSGGVGFLV
HRRILRSFSLKCVEKSYDGIMWLQLRDKRQNDSFYICICYLPPENSSRGGHAEEFFDKLFSGLYKYKDLGKIQICGDFNA
RTGGLQDFIEGIDPMRQRKTIDFEVNSQGRLFADFCVTSNFCCLNGRYTNDNFTCVSYKGKSVVDYCIVPYHDINLYFNF
DVLLVADLLDKHSIPVVGSVPDHSILCWHFYRKTVCRNSDNQMHSKPSFQNLSKRYQLNDINDSFMSDEESKNAVSELIS
KLNCGLSSQEHLDDVYYGFEKVIQKCVHKCCRERKTSRPQKGLPHSPKVWWNDNLQSLWNCVKCKQKEWLKCKNTEGKKV
MFIDYKNAHKIFDKAVRKAKRAYQYKKINALDAMVNKDSCSFWKEIGRIGSDEEKKYQNIPMEIINDDGEISEDYDNVMS
KWENDFHSLFKDNGSGFDDGFLSHVNTQLKILECNVQESDTRGNDLNLPIELTEVTAAVKRAKLNKAAGIDGIVSEMVKN
NASIQFLHALLSFCFERGISPTAWQKGIIHPILKPGMDEREPLSYRGITLISVICKIYCDIIRERLTHFLEKECIIKEEQ
NGFRKKRSCLDHLYSLYSMIENRKLCKKDTFVCFIDAKKAFDRVNRSLLWYKLRLIGVHGKLYNCIQALYRDTTCTVNVN
GNHTSFFKVESGVKQGCLLSPVLFNIFINDLVDNVMLCNGGIQVLDTNIDMLMYADDIVVLAENENDLQRMLDNIGAWAR
KWRIEFNASKTQIVHFRQKSQAKTSALFNCNGEKLDVVDSYKYLGLWFDEFLSFQKGTRMLAQSASRALGVVISKFKLIG
GSLFKTYKKLYDAMILPILQYASGIWGVDGYSVINSVFFRTCRFYLGVGKYTPNNAVLGEMGWDPPFYHQIQSVVRLWSN
LSKLNSDRYPSKIFSWSKSLANNGVKNWCFRVKELFSKLQCVHVLPLANLVSTDNFVKTVSSSCKLFIENRWRNSIFDDK
RKKAHAKNKLRTYRNFKQSLNTSKYVIECQNRSNRRALALFRCGCAPIALETGRYQNVPYEERYCVFCNSSNIEDEFHCF
MICSAYNDIRSQLLYDIIEHDHTFSDLSTYQQFIYLISADSLSSLIASFANQILTTRQELLYYLNE
>RTEX-1_NV_gag#LINE/RTE-X 1-1950 [Nematostella vectensis]
MASEAASEHSELTKFLSYLPSKKQFKWNSNAKSLLEFCIKELQDGDQDALISHSSKENSEVYRFENITVNFYPSTKTVQL
QGIGKDYLIKKLMSLLDYSGQTNQTTDCDIIEQESIVTEQETTDPVELSEPCSSKVALKDSSDQKGHDDRYQEFLDFKEM
MKGFIEKFDKKLSDLSMDMNEQLILIKDLECQQKNSRKELIMEMDRKLDETKQDKVLADLKGLQSSHSKLGNKIRETKLD
LEKCEQRLTFIETKIEMDAEESSDDDSEDEESGEPSDSEQVEQVERQINTQTILRTTVASSSSIVNSPNTNDLPQLASSG
NIESPINGNQQQIVDSSRTTRGETEPRPAQTATENTTRGNATLAETPGNILMLSDSIFGGIIQSRFARGRYVNKQYVQGG
TIEMLDHLSTMGCEAGNKYEYVILHTGTNDIRELPTEQICSNIENIVEECIKLWPQSKIVVSGLTFHLRDHAKNDIIDVV
NSASERLSSRCAKVYFADNRGVCLSRNGDIDESVYRDNVHLNNQTGTKKLVASLKSQIPGLRRQRDPAVTRKFPVNNRFQ
QRRQGAPSGSTGIPQARYQAPTGNPQAYCPPTNNPMFRPFPGNPQGYQQPTTNQLPTGRQQYPMNSQQQQLEQALKIISE
CVRLAYRNG
>RTEX-2_VC_gag#LINE/RTE-X 18-1562  [Volvox carteri]
MSQPDVHMTPISPTPKLARPVTRVLFDLTERKDRNVRRKIIGVKRRSATVNVFTPGRKTPGPKQLEEHIAQSCRPFLDGC
ISTIKAEFQSLLAGHVDRCQQTSDDMKHRINDLRSLVEEQAEVVKSLQERNAALRQELDATVGERRLTTQRLKELNERIE
ALETERSTARSEPIITRSQSADAKALDRRMEALEKRLAEHAASGPREQAVHCREMTENVDSVTARVATLEERFNDWERTR
TAPADGARCTGATGGRRMGPKAAPPAKQDQQDPREELHKEQQERPKQQQPKQQPRPNRAVADTTTSKAPKVTAITTRPHE
VAASCRGFGMTAGAPAPRPPKALAETTSSTDGHIDRGALVIDGLPATWTQEEVIQKLQLRLQQLTSMKVAFLDCTVEAHP
NVAARSSKRTTQRVRITTTPAAYYALYSLRKQLGLNAEEGADESFPAVRVSLALTALGESYKKGYQDVFRHLVDSKRAPS
WRGTHLMALTEPDSGVWAKIDIRKMAAELRQAAK
>RTEX-6_BF_orf1#LINE/RTE-X 74-850  [Branchiostoma floridae]
MSDKGTGTRTRDSARRDAEIEAASVRKEGDAAIMNELKALDRKLDGMQASFEKKLNSKVDSLQTSVEKLVSATKDELKAE
LERKTKEIGDNIDLEMGHMRARIDAMETKMAGISNSRAEFDPDESVIVSGLPFEEGEDVKEKIEELFHNGLQSDVPVVAA
ERMKSRGRGPGVVKVRLRSVQEKVAILRAKPKLKSDPSYEKVFLRSAKSHTDRLIELNFRTLLREIPGGKDYFITGSGRV
QKRGARDLPADNNLPTQP
>RTEX-3_BF_pol#LINE/RTE-X 2963-6700  [Branchiostoma floridae]
MEKKSALVFSSWNIQGSVKKKFSDVEFCNYFRNSDIVCIQETWADNYVDFQFPGYSLFSSNRCRNKRAKRNSGGVATIFK
SSFRKGITKLESSSVDSIWCKLDKKFFGLEKDLYLCNIYIPPESSKSIQVDPFDTLSIDICKFSNLGDIIILGDFNARTG
SVLETYFSIDSPDDPLTKDVLDTKKRNNRDSKVNNYGKRLIELCSSADLTILNGRFAGDLKGDFTCYHYNGSSVVDYCIT
QRSMLTDIQYMNVNSISPFSDHCHISFSLSAKHSPLVLKEDSQCYNPKPTQFIWTDESKQLYLDTINNKDTHSKLRDFCN
KTFHSSEEAVTSFTEILLDVSKSSLRIRRKIQNNKKTQIKKNKIWFDQNCWSLRQRVKRLSLELRKEPWKQETRTKYFTA
LKEYKKIIKHSKRNYKANLLRDLETLNEKNPKQFWSLFNTLDKEVNGTKYNGNIDPNITSKEWIEHFQGLNNLVKNNEFD
SSFEKSVTDSLKHLDKNAQNSLDYPFTTPEIMTGLKSLKSGKACGIDSISNEMLKYGAEKICEPLVILFNTILSNNKFPS
NWTTSILTPIFKSGDKSNVDNYRGIAISSCLSKLFTFLLNTRLQKFVESNCLLADTQFGFRRKCRTSDNVFILKALIEKY
IEKKRGKLYVCFVDMKKAFDSVWRDGLFYKLLNLGVGGKFFNVLQSMYLNVNYTVRLQNGLSSPFVSTCGVRQGCNLSPL
LFNIFINDLPQCFADKCDAAILNSKSLNCLSWADDLALISLSKEGLQNCINNLESYCNKWKLRVNVSKTKVLVFTKGSIN
RLSNKFYIYGKEILVTDSYTYLGIPLTSSGKFKAARKYLKTKAMRALFKLKSLLFSEKNIPIHLGMSLFNKFVLPILLYG
AELTCFDQTSKAIKIIVSKQIPESSPKTVFSSFLNKLHLEGDLPATVRKSVSSDLTHTYVIHFKKRSDKDRLLRLASGMK
LENDNFAIENIRLPSHISIPEFDTIDMSFQKFLLGVHAKSSNDGIRGELGTFPISINAEIQLIKYWHRLANLPEDSLLRE
AYDVVLSGEYDWTNHVTDILNYNGFGYVWTNPRLYHVNMLTDQLRLRLQDIYIQEWHSSIQNNSKLSIYSTLKERYGQKK
YLSNVHNFELRRAITKIRICSHKLNIEAGRYSKIPRDQRFCPFCPNEIEDERHFVMDCSRYNDKRTELFTLLSACSKDFA
TLCSIDKFNYILGGDNPHCVQVGKYIHDCLYRRTNSVNDMLDPLC
>REX1-4_XT_pol#LINE/Rex-Babar 500-3358  [Xenopus (silurana) tropicalis]
MITTLKYTKETLLSINTSVPKELLRIKPAVFQLLKSLGALRKSKREKRGRGGRSRNWNTKQSLITTKKTNLAALGEARLR
RLQYRSPLPSIFLSNARSLANKLDEWKLQIATDKILRGCCILLITETWLNPCIPDSAIELAGYTVYRQDRSQNSGKKRGG
GLCIYVNSSWCTNSTVVVSHCSQDVEFMTIRCRPFYLPREFNAILLTAVYIPPDANASVALGLLYESISSKQNKYPEAVH
IISGDFNHADLEDVLPKFYQHIKCATRGERTLDKLYTNIKQAYRAKPLAHLGQSDHVSLFLIPTYTSLRRQAPITTRTVT
TWPADASLQLQDCFERTNWEIFKQQDLESYTSTVLDYIRFCTDNVTKDRTMRIYPNRKPWMTREVQKLLKDRNIAFRSGD
RVLYSASRANLKRGIREAKAAYRKRIEEHLRSNNTRQVWRGVQHLTGYKSSNTGITEGDASLAEELNIFFARFEVPQTAG
ILQSPSYNEEVFTVGEVDMRQVLRKVNPRKAAGPDGVAGRVLKVCAEQLAGVLTEIFNQSLSQAFVPSCLKASIIVPVPK
KSGTKSLNDFRPVALTSVIMKCFEKLMRNHIIACLPVDLDPFQFAYKAKRSTEDAVATALHATLTHLEQRGSYARLLFVD
FSSAFNTILPQRLVSKLAVLGLPSLTCSWILDFLSGRSQRVRLGSHISNALCLSTGSPQGCVLSPLLYTLYTYDCVPTHS
GNKIIKFADDTTVIGLISGKESEMEYRDEVERLSEWCKDNNLLLNIAKTKELVIDFRKKKSNVEPLIIDKMQVERVSVFK
FLGMELEDDLTWSVNTKGLLKKAQQRLYFLRVLRKNHLPKNLLLAFYHCSIESILTYGLCVWFGACTSKEVKALQRVVRS
AEKIIDCPLPTLEHIYISRCRKKALGIAHDPTHPGHCLFQLLPSGKRYRALKARTNRLRDSFYPRAIMALNM
>REX1-1_XT_pol#LINE/Rex-Babar 3-2066  [Xenopus (silurana) tropicalis]
SDPITVMLTPTYTPMLKRTKPVTKQVRTWPEGATEALQDCFECTEWSVFREAATTDHHIDINEYAVAVTGYIDKCIGDXT
XTKTITTRANQKPWFTAEVRELLKTRDAAYEANDEVALRAARINLSRGIKLAKREYSKKVSDHFACSRDSRRMWQGIQTI
TDYKAPPRMCVNDTSLPDALNIFYARFETQNNKPAWKTTLLPDNQVLSLSAASVRRTLAGVNPHKAAGPDNIPGRVLRAC
ADQLTDVLVDIFNISLSQAVVPQCFKTTIIRPVPKTATASELNDYRPVALTPIIMKCFERLVLSHIKNQLPPKLDPLQFA
YQSNRSTDDAISMALHLTLSHLDHRNAHVRMLFIDFSSAFNTIIPQQLISKLDLLGLNTSICNWILDFLTGRPQTVQIGN
TRSNTITVSTGAPQGCVLSPLLFTLLTHDCTSNSDINHIIKFADDTTVVGLIRDNDDTAYREEVQQLALWCKDNNLSLNV
NKTKELIIDFRKTKAVHLPLSIDGVTVERVKSTKFLGVHITEDLSWTININSLTKRAQQRLHFLRRLKKVHLPKSILNIF
YRGTIESVLTSCITVWYGNCHASDRRALQRIVRTAERIIGNSLPSLQDIYTSRCLRKAISIMVDPYHPSHHLFTPLPSGR
RLRSIRSKSARLCNSFFPQAVRLLNTMLPSSTLDSLLHTFSGLHNTI
>hAT-76_HM#DNA/hAT-Tip100 2349-4199   [Hydra magnipapillata]
MNIFKVRCAKISGASLIRRKENGSTGREIIKCCADVVREKCAEILKLCNFFSILSDGSQARKTGKEKVLVLVRTGRNGIP
IYMVTELLDMSLFGGSDSNSLTTGINSVFESDKSLFRLSKEHYTNKVICATADGASVNFGAHIGVLSQMQQNRPWLIKIH
CINHRIELAIKDAFNEIPDFAQIDEFYLANYYLLRNSGKLKAEVEAASKCLGITHYNLPKITGTRFVGHRRKGVFNMLET
WPAFITAYQNYASEQTNKNTVSKVKGLLRSFKCHSFLYKVGLYLDCLELIIPASKIFETNELLPHEIPATINRTILEIED
KILSIGKDDEFLDSYINRYMVTNNSEVEGSFAKAGDKRKHADNRTYVNVMLEMNSFVQNESIEQIRQIKRTILSKLSLLL
SSRFKDYSRELILYRSMKFIDPIHWIKEDSDSGVQEINYISDHFETPLKNAGYQRDVALREWKKVKLLVRTEFECHPVRS
LWEIIFKKFIIEFPNVCCLVSLVMCISGSNSQVERTFSTVTNILTDKRLSLSHEALADCVVIHGNHSLWTKEDYNDLIER
SLAKYMKKRRKCIIVDDEKTQLSLEDYDSLIETRSDEDIDSEDDILTDNLRELYIK
>REX1-7_XT_pol#LINE/Rex-Babar 16-2773 via tfasty with CR1-31_DR_pol, 3 frameshifts and 2 stopcodons. [Xenopus (silurana) tropicalis]
MNPASSPSVLPDAAGRKWRHRKRCERKRKRVGGGGSLxQAKNxPQPASTPAIILSNVSSLENKLDYIRLQQSTQREFRDC
CFVFTETWLNDKVPDAAIQLDGLASFRADRNTVYATGGGGLCLFINTKWCKNSVLVYNFCSPLLEIATVRCRPFYLPREF
TTVFIIGVYIPPSANTKEALGELYARISILQNIHPEGLFIVAGDFNHANLKSVLPKFHQYVDFATRGENMLDLVYTNISG
AYRAEPRPHLGYSDHISVMLIPAYRPLVRRSKPVLKQVKIWPAGAISALQDCFENTDWNMFREAATYGDFTELEEYTSSV
ISYINKCTEDVIVSKSIISRPNQKPWFTAEVHTLLKTRNSAFRVGDKVALRIARAKLSRAIREAKRAYAQRIHNHFKDSG
DTRRMWQGIQAITNYRTSSPACDSDGSLPDVLNSFYARFDMQNDVTARKSTPSPNDQVLCLTTADVRKTLRRVNPRKAAG
PDNIPGRVLRGCADQLTDVLTDIFNTSLSSAVVPTCFKSSIIVPVPKKSSVSCLNDYRPVALTSIIMKCFERLVMRHIKS
MLPPTLDPLQFAYRSNRSTDDAISTTLHLALTHLDKKDTYVRMLYIDFSSAFNTIIPQHLIGKLSLLGLNTSLCNWILDF
LTERPQAVRIGNHTSNTTTLSTGAPQGCVLSPLLFTLLTHDCVATHSSNHIIKFADDTTVVGLISKNDESAYREEVRRLT
SWCKDNNLSLNVDKTKEMVVDFRRTRSVHSPLSIDGSSVEMVKSITFLGVHLEENLTWSLNSSSLHKKAQQRLFFLRRLR
KAQLPPTILTTFYRGTIESILCSCITVWFGNCAISDRKSLQRIVRTAEKIIGVSLPSIDDIYTMRCIRKAPSIVSDRSHP
SHSFRALTSRLCNSFYPQAIRLLNSMDWSHTKIITSGLN
>HAT-3_NV#DNA/hAT-Tip100 1776-3730 via tfasty with 31212193_Aga, 2 frameshifts and 6 stopcodons [Nematostella vectensis]
EKHSWMRYSVSKDAVYCAFCSMFRKGNSLFCNDEGVSDxKNLSSYVTRYLTTAHYAVKLTDSISLVQWKRALTSxAIxTA
QRNSHILKEIIEVIILCGKQNIPLRGHTEEDSNFKIILERIAASDRTLGDHLANARKNATYISPRIQNELIELCGKNIRN
TLVKEINKAQCFAILADEATDSATLEQLSISVRYVKNADTGTGVEVKEVFLGFEDVEGQTTADVLAKAILESIEAYNINA
DGLRGQGYDGASNMAGIRNGVQARIKEVHPNAEYVHCLAHALNLSIVHRCDDSIIGTxCQQCKKLLLRFHIEGYRNVVRR
WAKEKSCxLCARPVGCKSxCLVNFQALLDVIVKAFDILETLNDKKARSFVNAMLQSSFIVALVVCEYLLQFTVNLTTYLQ
SVNIDLLQAHQQAKVVVDALKNERNDASWDKLFQQATSIATARDTTISRPRVGGSRQNHRNNVPSDSAKEYYKRALYFPF
LDHIVAEIQARILKPSPLFKISKLPPCNVRDWSPEAMPASELLEAYESDIPEDVRGMQETECLRWKARWERVDEPPTTVV
ETLPHCRRHEYPNLLRAFTVILTLQITTSTPERTFSAMRRLKSYLRSTMTKDRLSGLALMHVHKHSISLDANDIVNEFAA
SGNRRLELLF
>YURE_CSa_pol#LINE/R2-NeSL 807-5627 via tfasty with YURE_CI_pol, 5 frameshifts and 2 stopcodons. [Ciona savignyi]
MNDNGAHQSRSTTIASTSSRSSSPLCCFSGTTGVQRASSSEFPALGDVHPVVSAVYHGQGGLSYECPHLNCPSIHHTVNA
LINHINKQHPRPIGSITSNQIRVKYTCSKCKFTTSELSLDKIDTHYNTCKGLRPGQEEDRGQIFCPVCGLVCARLCDARL
HFRNSHSEYAIPSIASFSGGPYKPSPRTGCIDIKYINYQYPLPPSQLLCPIWCCSHTLLNKSFSSVSSLQRHMVQVHKSR
TMFDLRCSKCAMAIAVSDSVQAAKDHWISCKGSNPSHPYSGPVLQTSPPPLTRLSIPLVSNSLNLLPSQSPVILPTSLGN
KSCAPTRLPKLVPTSPPTYARGGVKPPIVLLFRYLIxIYRPYFSHPIRSYWLLRFDHPNNEPVGVxLRRAFPRPSSKLST
QAPPTPSNPSFLRSDSSPDLPWRSPPTAYPMTSHEGSASFSRRSSDSPPHSPASVASVEAHVSDLLDKVCRGELRPLSPT
LPSSGLFSHLAPPKKSPPPPLTPVKAPILSSVSKLCRSLKSERIAPRAPASQGNRSEAGRAKSKLNPSSQQRPTLRTPRF
DPVIKPPKNARAGSKKSKPPRKLPRNRLGGADHTGQGPASPNTGDTVPSEVHTPCTPTKLCKDKGNFLRPRKWLMNIVNI
HGGEDFNFEQFDRDLEYWTQILSSSEKVVSAKRPSYNRGAAYRVMNNRRSGRRDPGPRPTRSPEGGGGNELGTRPRYRKG
AKLRADFWRDMKGTVRKVLDGSNNERRCSIPLDVLERRYRSDLAADADTGKQASMPDWMQSCLYAGRPDPPEVTSSVDER
VTAEEVEAVLSGLNLQSAPGSDGLSYRFWKDLDPTGRILSGLFEIVRRNGQMPSAWRTCNVTLICKDPEGDAQEVGNWRP
ISLCRTLYKLYAAVLARRLQTWAKDGGVISPCQKGFVPVEGVFEHVFVLDSVISEAKMRRQNLLAVFLDVRNAFGSVRHE
SMFEVLEHFEAPTYLVDAIRDVYSGTSCRIRTSAGSTEEIPCGRGVRQGCPLSGILFNLVMGILVVGLSAGDDGYRMACA
DGKLIQVLAYADDLVVVTKDRDQMLRQLAVCERFGRWAGLQFNQAKCGLIGWRVLHGRKRVPLGGDPLLLDGVEIPQLGP
DEHYKYLGAMTGIRHVPRTNSRLVSHFTARLQRLFQSFLTPHQKLIALKRFLLPSLSFHLRVRPLAQRDLMALDRRVREC
LRVAFRLTKPSCQAVFHTPQDLGGLGVPSLVDESHILTVAQGFKMLTSPDPLVAAISVGRVKIYAAKFGRLDDVWPLDRA
SFLSGGPVNGTVTRKPGINLPSDLWTRIRISSRQLGASWSEDLLGGTTVRFGNVLITSQSRRKLIQCLHVHCQRAWRQRW
ESHPNQGKTTSAHMAYSAASAWVKRPSSIDFSAYLFALKARLNLLPTRKVLALYSRGQHISTSCRCCGAESETLPHVLNW
CPSSMNLMTERHDSVLREILKHVDRTRFPVISIDRTVPEHMAATGEALRPDIVARRADGSVVVADVACPFDLKENLDEAV
KRKLTKYDELCCNIGSSTGKPVECHALVVGSLGSLSESLATSLQALGITGLIRSRLVKKLATLSIEGSQKIWRSWGAAAR
AASARS
>R2I-3_PI#LINE/R2-NeSL 57-6005  [Phytophthora infestans]
MPRSLASEPVHSSASRLPSQAPPTSRSGAAHTPPPSLQARPLASADAGLAATALASPQDPPYDVAPPGRAAGRLPDSVSP
GATLSAATARALAVRHWPLELDSDSSDDEDAQDPHAAAPGPPADVASVLAPPGRAGSMLADPAALAAGLARAPPPPSAPQ
DPSPALPAGPAGQNPRAAAPARVEVHTVVAPPGRAGGMLPDPGLVDSSPAAATAATPAPVAATATTARVAVEHHAHAEPN
QEHLPMARVLVEPMQVDECSSCDRSTLTADDGSGDDVAAPSSMLSNDVAAPMDVDSGTSCPPTLQQPLQRPRALHVGSKR
RRLNADDGEEAHQLQEEEEAGIHAPALRLSAASAQPASVLAVYTHNASRFDCTLCAYTAGSFASLKTHRNSRHRRTAFLD
RFSAGCACGVPFASRLAAARHAQACASLSSAPLAEASSAAGASSHTVDGADSTVSAAGHAEPDLPRHNATELTASPPLVS
STDVEVQATETEATENRWGTPLPRVLVASRIAGRLAQVPPPRWGPPLPRTTIAGRIATRLAATPAPRWSPPLPRSLVASR
IAGRLLPALPDAPACEDEAKDSDEMDWEASEPHVEAPGPVDEETIDDADGEWLLRFDGACRANPGPGGAGAALFKPSGPV
VWTCSHYDPSTTATNNTAEYTALLLGARAAADHGVTKLRVEGDSTLVIQQVRGIFATRSTRLRALRNKVKLELARVGSFS
LHHIDRQANGHADRLANAGLDRRRTQLECSVHPDGRGCTNTSVATAAPTASAAPSTPTRPPATTAAPFHSDQGHIDEDDE
RRADIDDGEIYAPMTLGPDEVPARRPRLRLRQLSDEELEAAGAIVERLSASLSAKITDAEDWGTAEGYITALPHLLYDKL
LPYSRTAPRHQRPPRPSRNQQDHPQPRRDQPQRNVDEQQHAESQQGEDQRQQQPPTRRRRRRGKRRGRRQRRHPRQPGQS
TRASQQSRQRRPRPPRVTRHHREHRIDEALDELHTLERARPQDRSAIDKARRRVGRVRGAINQHLLRHRFDTDEKACVAD
ILEKAHAARAARTAQAAGAATSTGGAATAPTQQAATSALGDADDGTCPILADELWQYFTGTNTPRWEFNPATPVGEAFRT
AMARLPPATRLRELLTEAPTADEIETQLQHVRGSSSPGLDGIGYDVYQRFAQQLLPVLTASFKRCWTAKMVPQSWQVGVV
RLLYKKGAHDDPANWRPICLQQAIYKLYTGVLARRLVRWLDVNDRHAPGQKGFRAVNGCGEHNFLAATLIDQARRKRRSL
YEVWYDFRNAFGSVPFQLLWDSLQRLGAPADFIDMCKGLYHQAAFVIGNAADGPTAAIRQQVGVFQGCPLSPQLFNVAIS
PLLFALRRLPETGVQLSGDDRVGVSAYADDLKTFSSTKAGATKQHELVAAFLAWTGMKANAAKCSSMGVRRNSNGATEAD
NLDLALDGTPIPSMTHMQSYTYLGIGDGFDHVHRRIELAPKLKTLKQDTTALLESGLAPWQVVKAVKVYLYPRVEYALRH
LRPEDQLLESFDLHLRAGLRHLLRLPKNANNDFFYSPVSRGGLGLLPLVELHAALQIAHGWQMLNSTDPATRRIAREQLH
QIADARHRLDKAHWKERGDELCQLFLNLDLGTSAHAPPKRRNCDIGSLWVDVRKNLQAFGLKLETAPADAESGTPALPLQ
LRVPHHEKWLTHRDVLRHVKQHLKNKHWRAWCAFQDQGRTARAHGGVGSSFITRPRGMWESDYRFAVAARLNMVDTSATL
ARRRLRAHDRCRYPGCRWKESLEHVLNHCPGTMDAVRGRHDGVLREIEHALRAPSGARRELRVNQTVPGLPGPALRPDIQ
VYNHDQRTVAVVDLAVAFDRQDRDDPETSGLAKAAAEKKAKYTGIQRHLERQGWKVHLSALVYGSLGSVAPNNYKVYTEH
LGLLKRDAKRLDRTLSVACIQSSRRIWNLHCAKHRARQHQTPSQSRGRRVTETGGAPSRTDRR
>Babar_pol#LINE/Rex-Babar gi|18157526|dbj|BAB83841.1| ReO_6 (upstream exon removed; no gag found upstream) [Oryzias latipes]
GFLHFIKVNVVQFNTVTFSREELLHIRESSAGLFNPVFTHTDSFLEILIGGAAALCGIRKRRQRGKRAGALVKRRQRGLR
TALPAIHLGNVRSLANKVDELLLLLNKNSDFRCSSALCFTETWLSEQIPDSALHLPGFQLHRADRNTALSGKSKGGGTCF
YINEGWCTDVTVLKKTCSPQLESFFINCRPFYSPREFSSFVLVGVYIPPQACVTEALQQLADQITEVERNHPDSLVITLG
DFNRANLKAEIPKYKQHVTCPTRGLNILDHCYTTITDAYHSVSRAALGLSDHCLVYLIPTYRQKLKSAKPIVKTGKRWSD
ESKLQLQACFDCTDWSVFEAAASDLDELTDTVTSYISFCEDMCVETKTFCTFNNNKPWFTAKLRQLRQDKEEAYRSGDRD
RYKQARNKLTKEIKAAKRSFTAKLTDQFSANDSSAVWKGLQTITNYRRPSPRPSDSYHLAEELNDFYSRFERTSPSPSAT
ISITQDLPAIPTSPTPAPSSALTICERDVRQQFQKQKIRKAPGPDGVSPSCLKVCADQLAPIFTRIFNSSLEMCVVPACL
KLSTIIPVPKKSPVTGLNDYRPVALTSVVMKSFERLVLNHLKVITEPLLDPLQFAYRANRSGDDAVNMALHYILHHLDSA
DTYARVLFVDYSSAFNTIVPELLHQKLSQLAVPLPTCQWIISFLTDRRQQVKLGRFTSSTRILNTGAPQGCVLSPLLFSL
YTNDCRSGAPSVKLFKFADDTTVIGLIRDGDETAYRGEVERLVLWSSQNHLELNPLKTVEMTVDFRRNPSTPPPLTILNS
TVPSTDSHRFLGSTISRDLKWTAHIDSLRKKAQQRLYFLRQLKKFNLPQGLLTIFYTAIIQSVLTTSITVWFGSATRHDR
NRLQRIIRSAERIIGTSLLPIQDLYRSRARKRAGRIVKDPSHPGHCLFSLLPSGRRFRTLRTKTTRHKDSFFPRAVTLMN
T
>Rex1-1_FR_pol#LINE/Rex-Babar 2-2257 Fragment. [Takifugu rubripes]
PPDANATLAMNELHAAISQQQSAHPEAAFIVAGDFNHSNLKTVLPKFHQHVSCNTRGNKTLDHVYTNMAGAYTATPLPHL
GQSDHLSLFLTPKYSPLINRVRPSMKTIKVWPAGADSVLQDRFQHTDWSMFTPQGSCGSHTHTDIDNFTSTVLDHITTTI
DSITTTKRXTTYPNQKPWMNKEVRLLLKARNTAFRSGEAQAYSTARANLRRGIKKAKHTYKRKIEGHFSSSDPRRMWQGI
QAITDYKPNNSSPTVMDTTFLNELNTFYARFEKDDKDTATRTPLPADHQPITLSSTAVYTALSRINPRKAAGPDGIPGRV
LRACAEQLAGIFTDIFNLSLAHAVVPSCFKATTIVPVPKHSRPTCLNDYRPVALTPIIMKCFERLVLAHLKDCLPTTLDP
HQFAYRSNRSIDDAVSIALHSVLTHLDNTNTYARLLFADFSSAFNTVVPSKLITKLGDLGINPSLCNWTLDFLTDRPQHV
RSGHSRSTTITLSTGVPQGCVLSPFLYSLFTHDCRPVHGSNSIIKFADDTTVIGLISNNDETAYREEVERLTTWCANNNL
VLNTSKTKELIVDFRKARGGTQDPIHINGMAVERVSSFKFLGTHISEDLSWTTNTSSIIKKAHQRLFFLRTLRKNQLSSA
VLVNFYRCAIESILTNCVSVWYGSCTIAEHKALQRVVKTAQRITRTTLPAIGDVQRKRCLHRARSILKDSSHPAHRLFSL
LPSGRRYRTLRTRTSRLRNSFFPRAVSLLNSC
>CR1-12_NV#LINE/Rex-Babar 2-2629 [Nematostella vectensis]
ELQTVVNLNRPQIVCITESWLHPDIPDAAVNLPGFSCFRRDRTHTSGGGVCVYVDSNISCTRLSDYESQDIESIWIDARP
RRLPRKISRILLGSVYHSTSCGEVENCXLLEHLQSNTESFLRNHPEGLVLICGDFNPTSTRFSXVATKRATGLSQIVKVL
TRDTGILXWCLTNMPNSFAPVCQLPKIGRSDHYTLLIAPILRSLKPRAKXTIWKRDLRPSKIRDFGCWITQQRWTEVFDK
QLVSEKFQAFSDVXYMAVDKYLPLRKISICSSDKPWVSNKLKYLVSKRQKALHQFGNDSPQFKMYRNSVQEECKKSKASY
YKTKVAKLKNTNVKRWWKEVKGLSGDSGSSRDWSQQMLCDDIPTTSDLATRFNNFLGSLTAHFEPLPPQAPGSFYQVPDD
LLIDNRRAYQALRQVKTNKSSGPDPIPARIWNTFAIELAPVVCDLYNASLIQGYVPAPLKQSEISPIPKCPRPKVVEDDL
RPIALTSQLAKVLEGFTLQPLFHQVLHQLDWLQFAVAGKSTTEALVYVMHIIFEALDKGDCWVRLFFSDFSKGFDLVDHN
VLIAEMSHLGVHECIIRWVSSFVSNRSQYVKIRDSRSHVISPKGGIPQGTRLAPLLFAILVNRLARDWQYRIKYVDDATV
FEIVPRNSPSYLPFVANDINSYALARNMRLNAKKCKEMAMCFLTYNSTELAPMLINGCVIERVDCYKLLGVHITSDFSWN
THCDAIVKKATKRLYAIRALKKSGLSSNDLIQVYCSTMRPVLEYASPVWSALPEYLVELVESVQKKVLRIVFPNLSYHEA
LSHAKLETLCQRRETACIALVAKAKRGGPLKRLIPIPVATHHGYGLRSGTASVVPICGRTNRLNNFCTYRYQQVM
>RTE-1_GA_pol#LINE/RTE-BovB 139-3339  [Gasterosteus aculeatus]
MKKRKREGVTRPGGSPGPPFGARPRWRARQRASGGRVYRGARPGTARRSDAAAQHSTPHGLTTCGGNRWGRVRCYKGGSD
SGGSRRNRPGRQMLALGTWNVTSLGGKEPELVREVERYQLDLVGLTSTHSLGSGTKLLDRGWTLFYSGVAHGVRRQAGVG
ILISPRLSAATLEFTPVDKRVASLRLRVVGGKTLTVVCAYAPNSSSEYSAFLETLNGVLHGAPVGDSIVLLGDFNAHVGD
DGDNWRGVIGRNGLPDLNPSGCLLLDFCASHGLSITNTMFEHKDVHKCTWYQSTLGQRSMIDFVIVSSDLRPHVLDTRVK
RGAELSTDHHLVVSWVRGWGKTRDRPGKPKRVVRVNWERLEEAPVQKIFNSHLRRSFSHIPVEVGDIEPEWSMFKTSIAE
AAAVSCGLKVLGASRGGNPRTPWWTPVVREAVRLKKEAFRVMISGGTPEAVAVYRQARRAAASAVMEAKQRVWEEFGVTM
EKDFRSAPKCFWKTIRHLRRGKRGTIQAVYSKDGTLLTATEEVIGRWKEHFEELLNPTTTPSLVEAELEAEEGSSSISLV
EVTEVVKQLRSGKAPGIDEIRPEMLKAMGVGGLSWMTRLFNIAWKSGTVPKEWQIGVVVPLFKKGDQRVCANYRGITLLS
LPGKVYSKVLERRVRPIVEPRIEEEQCGFRPGRGTTDQLFTLSRIIEGAWEYAQPVYMCFVDLEKAYDRVPREILWEVLR
EYGVRGSLLGAIQSLYAQSESCVRVLGSKSKAFPVGVGLRQGCALSPILFVVFMDRISRRSRGEEGLQFGGLRISSLLFA
DDVVLMASSVCDLQLSLERFAVECEAVGMRISTSKSEAMVLSRKPMDCLLQVGNVSLPQVKEFKYLGVLFTSEGKMECEF
GRRIGAAGAVLHSLYRTVVTKRELSRKAKLSIYRSIFVPTLTYGHEGWVMTERTRSRVQAAEMGFLRRVAGVSLRDRVRS
SAIREELGVEPLLLCVERSQLRWFGHLVRMPPGRLPREVFQARPAGKRPRGRPRTRWRDYISALAWERLGIPQSELVDVA
REREVWGPLLELLPPRPDPG
>RTE-3_DF_pol#LINE/RTE-BovB 322-3236 via tfasty with RTE_Ele3_pol, 1 frameshift. [Drosophila ficusphila]
MTTIRISKRTRIGQWNVRTLMEPSRLAQFELEMDKLQISIAGISEMRWKGSGATTTSNGNSVLHSGNNDGGRNGVGIYVS
KRYKQTLISWNPISDRIIMARFRCSARHITIVQCYAPTEDASDDIKDDFYNSLTSTLTRIQRGDIKILMGDFNAKIGPNN
TGLEPVMGRHGVGSRSNNGDRLIDLGQTSQMVIGGTVFPHKEVHKYTWTSPNGLTRNQIDHICISRKWRSSMKDVRNKRG
ASIDSDHELVVGELSIKLRRKRTVNRTTNRPPPLNVHRLGDPTLSARMATTLREQLMPLQPTHPWEQTCRSLRNTAEELL
GTRQPRRIDWISTETWNLINRRNNLKQRADHDCRARAEHSELCRMVKKSARNDKRALLNRLADSAESAANANNMRLLYQI
IGKLSGCHQIRQTQPVRDSDGALLTDDDAQIQRWRRHFMEISYTEHPSSPHEEEPRSIEPNTTNTRISPTPPTVREIRDA
IRKLKSNKAAGDDGIPAELLQTDSQLIAETLHPHFEAIWDNERVPKAWKKGIIIKLPKKGDLSDCNNWRGITLLNTSYKI
LATLLNERLMDKIEPTLRDEQGGFRPHRSCVDQANTLRVITEQAVEWRSPLYLLFIDFQKAFDSVDRVAIWRALARKGVP
TNIINIVKAMYDDADLAVLHNGKISAPFQTNIGVKQGCPLSPLLFNLVIDEIMREVSKSRRGIIWSFTRHLEDLDYADDI
CLLSHRLTDIQAKADDLESRAKSVGLNINAAKTKAMRVNNTNQGNITISGKSVDFVDSFVYLGTLITGNGGAEQDMENRL
SKARSAFGRLHRIWRNTQLNRRSKLRIFNACVKSVLLYGSETWLTSQRMLMKLQAFVNKCLRIICGIFWPARINNNDLWH
DTGEVPIHQQIRKKKWNWIGHALRKNHDSIARTALDWNPQGSRRVGRPKLTWRRTTLQDMSRINTSWDSIKQTAPNRVRW
RSLVEALSSQEE
>RTE-2_Gav_pol#LINE/RTE-BovB 599-3802 via tfasty with RTE-2_Crp_pol, 2 frameshifts. [Crocodylidae]
LVCLLQWVLGAKSKLKKQIASLHQTKREREKSILHISTWNVRTTCTGLADDLVNISDARKTAVIDMELNRLNTDIAALQE
TCLASDGSLREKYYTCFWQGKAPEDTREHGVGFAVRNNLLKTTKNPSNGSERILTLRLCTSEGTVTLVSAYAPTLYSSAE
VKGKFYEELASVIGKIPNTENLYLLGDFSARVGADSESWPICLGSHNTGSMNDNGQRLLEFCSYHNLCITNSFFQTKPCH
KVSWRHPRSGHWHQRSNLSNVLLTHSYHSADCDTDHSLVVTKIKLKPKKIFCSKYQCLPRINITNTSDHQKTLQFMEALE
EAASELPLCETAEEKWGSLKKMIYVTADSIFGKQVRRNRDWFEAHSHELIPFIKAKQTAMLNHKKNASDGTLKELRKARS
AVQQISRRCANDYWLRLCEEIQSAFDTGNIRGMYDGIKKAIGPTAKKSVPLKTASGEVITDRKQQMERWVEHYLELYSRE
SDVTDTALNFIESLSVLEELDDIPTVEDLSKAIDNLAIGKAPGKDGIPAEVIKCGKPVLLPHLYELLTHCWTVGTVPQDM
RDANIVTLYKNKGDRSDCNNYRGISLLSIVGKIIARVVLRRLQILADRVYPESQCGFRASRSTIDMIFSLRQIQEKCREQ
RRPLYIAFIDLTKAFDLVSRKGLFKLLEKIGCPPKLLSIIRSFHDGMRGTVSYDGSTSEAFEIRSGVKQGCVLAPTLFGI
FFSLLLTYAFGTATEGIYLHTRSDGKLFNLTRFKAKTKVRKVLIRELLFADDAALIAHTESDLQSLISRFAHACQEFGLT
ISIKKTNVMGQNIDSPPAITIGENVLDVVSKFTYLGSIVTNNLSLEAELNTRIGKASGIMSMLSKRVWNNNKLTVKTKVK
VYHACVINTLLYGSESWTTYSTQEKRLNSFHLRCLRRILGISWRDKVAYAEVLERASIPSIHSLLSQRRLRWLGHMRRMD
DGRIPKDLLYGELFTGRRPCGHPYLHFKDACKRDMKAMNIEPNDWEKIAEDRSAWKQSIKRGMKAFEERRAQHAEERRNL
RKNPAPHSGLLDTNFTCDKCGRDCHSRI
>RTE-9_AMi_pol#LINE/RTE-BovB 1-1845[Crocodylidae]
MANQVPGNKKRNLKTFRLGSWNVRTMCPGMNDNLQMMDNVRKTALIDRELQKLNIDIAALQETRLANSGSIREANYTFFW
EGRSAEDTRLHGVGFAVCNRLVKTIETPTGTSDRIISLRLQSTDGFVNIISAYAPTLQASSDDKDNFYDALHQVIEHLPS
NERLLLLGDFNARVGADHDSWPTCLGHHGIGKMNENGQRLLELCTLNHLCITNTYFAGKEHQKVSWRHPRSGHWHQLDLV
IARRKDLPSVLHTRTYHSADCDTDHSLIVSKVKVIPKKLHRAKHKSQPRINIHSTKVQSKCLDFQRTFELAMSTKATTAN
AEGTWSGLRAVIQETATEVFGKKKLSNKDWFEAHSEEMLPLVEAKNTAYLKHNQNPTESSKAKLKHARAMVQKTARRCAN
QYWTDLCQEIQFASDTGNLRVMYDGLKKALGPTVTKVAPLKSRDGEVKITDKNKQMSRWVEHYLELYSHETDISEEALDQ
LPTLSVLAQLDEEPTAEELSKAIDSLASGKAPGEDGIPAEVLKCGKASLLPHLHQLLVCCWKEGQVPQDMRDANIITLYK
NKGDKGDCNNYRGISLLSVTGKAFARVILKRLQQLADRVYPESQCGFRAGRSTVDMIFSLRQLQEKCREQNKPLYVAFVD
LTKAFDTVSRAGLFEVLVKIGCPPTLLSMIRSFHENMQATVQFDGSTSDRFEMKSGVKQGCVLAPTLFGIFFSMLLHYAF
DGLEEGIYLHTRSDGKLYNLSRLKAKTKVRHILIRELLFADDAALTAHEEGQLQILMNRLSHACRTFALTISIKKTVVLG
QGVRQSPSISLDDTPLEAVNKFCYLGSTVSDNLSLDEELNVHIGKAATTFSKLSKVWNNTKLTIKTKLLVYKACVLSVLM
YSSETWSTYAYQEKKLNSFHLRCLWRILDIKWQDRITNTEVIAKANLPTITALLKQRRLRWLGHLRRMEDGRIPKDILYG
QIAGGERRVGRPKLRFKDVCKQDMKAFGIDPNLWEALAGDRTKWRSLLNHGVQHHDEKWSLKLQQKM
>RTE-11_BF_pol#LINE/RTE-BovB 537-3581  [Branchiostoma floridae]
MMANQYNTRVEVPNRTLPAELDSQESQDGLPPNLQGRGRLDYSSSRGNRMVNCRSITTISTLNVRTIREAQRREELSTNL
ALYDIDALGIQEHRIAHEEEVRYESIHGNMLITTSASRNRSGATVGGVGILLSPKAYNSLAKVTPFNERILIANFQGNPA
TTIIVTYCPTNVVDEETTNEHYDSLRRAIQSIPAHNLLMVVGDFNARIGSEEAKYTFHSETNRNGKLLLELSKEQGLIIS
STRFQKKAGKLWTYMSPGGNRYQLDYILIRKKWQNSMLNVEAYNTFASVGSDHRIVSARVRLSLRKKKSLPRRKQYDWGA
LRRSEVLQQQYAIEVRNRFQPLQEENETATERYGRFIAANEGAAEKTIPIKKREKTAKYSSDPRVSQARDEVNRRYEVFV
ENTQEKNRQELKRARRRLEETYTRVAEEDLLQKIQEIERTHENSKHGQSWKLINEITNREATKKSQLEGNSQEERVQSWY
NHFKNLLGNPPEITCEEEEIPTILGDLGIKEGPFDIEEYEMARKSLVEGKSSGEDGIPPEVLKRCKDLDEIILDFCNKAL
LEGEKPEQWSTLNIVPIPKAGNLRLTENYRGISLSSIVAKTYNRMILNRIRPVLDKHLRRNQNGFRVGRSTVGHILAIRR
LIEGIKSYNLTAIITFIDFKKAFDTIHRGKMLKILRAYGIPDQLVEAIASMYKDTKAKVISPDGETELFELYAGVLQGDT
LAPYLFVIVLDYALRTAVEGREEELGLQVERRRSRRIGPKVVTDMDFADDIALLSEAIQQAQELLGCVESSVGKVGLRMN
AGKTKYMTFNIPTPYCLKTGDGCTLEEVKDFKYLGSRMESSAKDITARKAAAWLACNKLKKIWRSNLSRELKVRLFLSTV
ESVLLYGCESWTLTTKLEKQLDGCYTRLLRTALNVHWSQHITNKDLYAGIPKLSDKIRTRRLKFAGHCLRSKEIVADLVL
WTPRHGKRRPGRPTATYLDMLRKDTGLGVDNLHQAMTDRDIWNAIIARDQKDSS
>RTE-10_SP_pol#LINE/RTE-BovB 2-1330 Fragment.  [Strongylocentrotus purpuratus]
ICANSKKPKASVCEDFRTISLMSHVTKLLLKIILNRIKIQIDNEVGKEQFGFRPQSGTREAIFCMRMMTERYIAVNKEIY
VCFIDYSKAFDKIHHDKLIESLQKINLDGKNIRLISKLYWEQTAAIKINNEITGYTKIKRGVRQGCVMSPSLFNLCTELV
FREISDMKGVSIGGVNINNLRYADDTVLCAENEADLQHVLDIVKVKSEEFGLSMNVKKTKSMIFSRTENKPRICLKLDGH
IIEQVSNYIYLGQNITDDARCEAEIKRRIEIARNTFLAMKGLFTNRKVKFALRLRLVNCYVWSVLLYGAETWTINKAMEN
RITSFEMWIYRRMMKISWKRMKTNKEILHMAGRKQIALVGLVKERKIKYFGHVKRHQSLLKDVLEGRVEGSRPRGRPRIN
WEENVKNWSGLKLQECTRMAEDRVKWRDVAINLRTGRRYLDR
>RTE-1_SBi_pol#LINE/RTE-BovB 1-2024 via tfasty with RTE1_MT_pol, 1 frameshift and 1 stopcodon. [Sorghum bicolor]
ARTKWWKLEGEASKVFNERVVEEGPWKDEGDANNMWKKMATCIRKVAAEVLGVTKGSGCDLKDAxWWNEDVQKAIKEKKE
CYKRLYQDRCADNIEKYKVAKKTAKRAVGEAKGRAYEGLYQCLNTKEGGKDIYRMARARDRKTRDFNQVKCIKDEREQLL
VKEDEIRHRWQEYFDKLFNGENENSTGQLDNSFDDTNRCFVRRFQVQEVREALKRMKVGKALGPDGIPIKVWRCLGDLAI
VWLTRMFNNIYRSNKMPEEWRRSILVPIYKNKGDIQSCTNYRGIKLMSHTMKPWERVIEHQLRRSTIEAIFLIRQVMERF
REQKDLHMVFIDLEKAYDKIPRNVMWWALDKHKVPTKYVTLIKDMYNNAVTSVRTNDGNTDYFPIKIGLHQGSALSPYLF
ALVMDEVTRDIQGNIPWCMLFADDVVLVDESQAGVNRKLELWRQTLESKGFRVSRTKTEYMRCDFGNATHEEGEVSLEGQ
VVPKKDTFRYLGSMLQKDGDIDADVCHRIKAGWMKWRQASGILCDKRVPQKLKGKFYRTAIRPAMLYGAECWPTKRRHVQ
QLSVAEMRMLRWICGHTRMDRVRNDDIRDRLGVAPIEEKLVQHRLRWFGHVQRRPSEAPVHCGVLSRDINVRRGRGRPKL
TWGEAIKRDLKGWDIPRDLCLDRSAWKAAIDVPEP
>RTE-1_NV_pol#LINE/RTE-BovB 980-4079 via tfasty with RTE-1_DR, 1 frameshift. [Nematostella vectensis]
SKLKARFTPLTAAAWNVRTLLDRGGSERPERRTALVASELGRYNIDIAALSETRLAGEGMLCERGTDYTFFWSGRSPVER
REAGVGFAVKSSLMTNPDEIKDKFYEDLNNVINTVPQADKLIILGDFNARVGCDSSIWEGVIGKHGVGKCNSNGLLLLQT
CAEHELLITNTIFKLPTRNRTSWMHPRSKHWHLIDYSIVRKRDRQDVRVTKTMCGADCWTDHRLVVSKLNIRVQPKRRPQ
GVKKTKRLNTSKLKVSETKNTFSDTLKQRLDSTLLNGQDVETAWAGLRELVYNTALECLGQKIRKHKDWFDDNSTEIEQL
LEEKRRAYKAHLVDPSSISKLDTLRKVRSTVQAKLRQMQDTWLSRKADEIQDYADRNDMKNFYNSLNEIYGPTTSGSLSP
LLSADGETLISDKDKVLARWAEHFESVLNRPSAINDEAINRLPQVPVDETMDVVPTFVEIQKAVNLLSSGKAPGSDSIPA
EVYKEGGAALTEKLYQLFQLIWNHEAVPQDFKDASIIHLYKRKGNRRICDNHRGISLLSIAGKILARVLLNRLIVHLEQG
LLPESQCGFRKERGTTDMIFAARQLQEKCQEQNVDLYSTYVDLTKAFDTVSREGLWKIMAKFGCPSKFINIVRQLHDGML
ASVQDNGETSHSFPVSNGVKQGCVLAPTLFSLMFSAMLTDAFKDDEVGIGIKYRFDGSVFNLRRLQAKSKISADTVNDLL
FADDCALNATSQADLQHSVDLFSSACNNFGLKINTKKTEAMHQPAPGKPYTEPNIIINGQKLNAVDKFTYLGSTLSRNVV
LDDEVTNRLAIASAAFGRLRKNVWKRRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQ
EKIPDTEVLARAGLPSIHTILKQSQLRWAGHVARMPDERLPKKLLFGELQHGKRCKGGQKKRFKDTLKLSLKAFNIDHTS
WELLAQNRQGWRRVIRNGAAACEANWTAAAEERRAARKSQDPKAATIPCPQCPRLFRAQIGLISHLRTHKRP
>RTE-1C_DAn_pol#LINE/RTE-BovB 243-3206  [Drosophila ananassae]
MITETNTRNEENNHPPNPMTTIRIMKRTRIGQWNVRTLMEPTRLAQFEGEMEKMQIAIAGISEMRWRGNGTTTTSTGNLV
MHSGSNDGGRNGVGIYVSKQFKQTLISWSPISDRIISARFRCNARHITIVQCYAPTEDASDDIKDDFYNALTSSLTRIGR
GDVKILMGDFNAKIGPNNNGLETIMGKHGVGSRSNNGDRLIDLCQTFQLVIGGTVFPHKEVHKYTWTSPNGHTRNQIDHI
CISKKWRRSLMDVRNRRGASIDSDHELVVGELIIKLRRNHNTGTRNTRRPPPLNLHRLGDSTLSTRMATTLREQLGPQQE
EHSWELTCRILRSTAEEVLGTRQRRQVDWISTHTWDLINRRNSLKSRADHDCRVRGEYNELCKLVKKSARNDKRKLLDRL
AENAESAANANNMRALYQIIGQLSGKCQRQTHPVRDSTGKLLTEEEAQIQRWRQHFMEISCTEQPSSIQEDSLSGMSSNN
IRISPTAPSVREIKEAIRKLKNNKAAGDDGISAELLQIDSQLMAETLHPHFTNIWESERIPASWKKGIIVKLPKKGDLSD
CNNWRGITLLNTSYKILATLLNERLQEKIETTLRDEQGGFRPHRSCVDQANTLRAITEQAVEWRSPLYLLFIDFQKAFDS
IDRAAIWRALARKGVPVKIISIIKAMYDDADLAVLHNGKISAPFQTNTGVKQGCPLSPLLFNLVIDETMREVCRPRRGIT
WSFTRQLEDLDYADDICLLAHKFEDIQAKANDLETRANSVGLTINASKTKAMRINNSSQSNITIGGKTIDFVDSFNYLGC
VIAANGGVERDVDSRLSKARSAFGRLHRVWRNQQINRKTKLRIFNSCVKSILLYGSETWLTTQRMLMKIQSFINKCLRII
CGIFWPTRISNEDLWHCTGEVPIHQQLKKRKWKWIGHALRKEPGSIVRMALEWNPQGSRRVGRPKMTWRRTALRELSLGR
ITWDTAKQTAPNRVRWKALVEALSSQEE
>RTE-2_DAn_pol#LINE/RTE-BovB 212-3220  [Drosophila ananassae]
NPPTENKSSVNVADEASERNQSKVDDHGTRKKDNDLRVCTWNVRTLYRPGAAQQLADTLNKCRADITAIQEMRWIGQGCL
RKKNCDIYYSCHPERHEFGCGFVVGARLRRRVSHFLPINERLATIRITAKFFNISLICAHAPTEEKDDVTKDAFYAELDR
AYGRCPSHDIKILLGDFNAKVGREDIFGATVGQFSLHETTSSNGLRLIGFAAAHNMVVRSTGFRHLDIHKASWLSPDRLT
RNQIDHVVIDARHASNVLDVRSCRGPNIDSDHYLVAAKIRTRLCVAKVARRGLLRKLDIGKLQSQRTRDAFSTQVTGLLS
RATPTPEDISNMWALISHSLRTSAEEVIGFQRTPKRNPWYDQECRDATAAKDAAYGRTLQAGATRAVVEVYRSRRRDEKR
LFRRKKREQERRECESIESSRDRNEARNFYQRVKRLTQGFKTGGVACKDDDGNLITDAEIVLRLWRDHFSSLLAGSGHDD
YGEYDPQTPIYGTDVDVPTPSHAEVKDAIQRLKNNKSAGADGLPAELFKAAGDMLVGSMHKLISKIWLTESMPDDWXHSM
ICPILKKGDATLRTNYRGISLLPVAYKVLTSVLCEXLKPHAEALIGPYQCGFRPGKSTIDQIFTLRQILEKSYENQIDTY
HLFVDYKAAFDSPRRDRLYAAMSELGIPAKLIRLCMMTLSNTISSVRVGNDQSETFYTKCGLRQGDSLSCMLFNILMESI
IRKAGVHRTGTILTNRCVQLLGYADDIDIIGRTKRDVTAAFGAIEKESAKVGLAVNMDKTKFMVCSSRESRRLDSQLSAG
SHSFESVKEFIYLGSAISSTNDVSLEIKRRITLANRCYFGLSRHFNSRALSRPTKITLYRTLILPVLLYGAECWTVVQSD
AAALGVFERKILRKIFGPICVGDAYRTRWNHELYELYGDVDIVSRVKIQRLRWLGHIARMEEDAPARKVFDAVIVGKRRR
GRPRIRWQDQVMEALSTSGVTNWRARAQDRKAWRQIVQQAVTR
>RTE-2_AMi_pol#LINE/RTE-BovB 949-4242[Crocodylidae]
MGSSKNMEAAMXVNLWKXKTGVKQGCVIAPTLFSVFLAAMLHLTTSKLPAGADVNSRMDGKLFSLSRLRAKTKTTPTTFF
WKGKQEGERRLHGVGFAIKNELINQLNEFPIGINERLMTLRLKLAGSQYATVISAYAPTLDAADETKEEFYANLDQVLSD
VPEGGTSERTFIVEKLLRIRLILLGDFNARVGRDSNLWNGTIGKEGVGKVNSSGILLLTKCAEHGLTITNTLFRQKNRHK
TSWQHPRSKHWHLIDYVIVRARDRKDVRITRAMLGADDCWTDHRLIRSVMSLKLAPKRRLQQKQCRRKINVEGLKDPSKR
DLFHQCLNEKLVNSNQQQWENVSSAWGALKATVISACEETLGFSTRKHQDWFDENDREIQELIDRKRKAFCAWQNDTNSK
QKKLNLQQAKAEVQRRTRDMKNKWWEDKAKEIQHLADIHDMRGFFSATKAIYGPSTRGPTPLRPKDGGDLIKERGAINAR
WKEHFEDLLNRDSVVDESVLNSIPQHPVRDDLGIPPTLDEVRKAIKQMKNDKASGADGIPAEIFKQGGEELTSQLHALIL
RIWNDEEIPDDLRDAMIVTIFKKGDKSDCGNYRGIALLSTTGKIIARTLLNRLLPLAEELLPESQCGFRASRGTTDMIFT
ARQLQEKCREQHKPLYMAFFDLTKAFDSVSREALWRILLKYGCPPKFVTILCLLHDGMRAVVLSNGSITDPFEVKTGVKQ
GCVIAPTLFSIFLAAMLHLTTNKLPAGVELNYRMDGKLFNLSRLRAKTKTTPTSIIELQYADDAVVCAHSEADLQAIVDV
FTEAYKKMGLTLNIQKTKVLHQQAPNEQSPAPVIQIHGETLENVEYFPYLGSHLSQKADIDEEIQHRLKCASAAFGRLKK
WVFEDRDIRSETKLMVYQAVVIPTLLYGAETWTTYRRHLKLLEKYHQRCLRKILRIQWEDRRTNVSVLLQANTTSIEAMI
IRHQLRWAGHVIRMSDSRLPKQVLFSQLSQGVRSRGGQRKRFRDVLKANLKKCNIDVNSWETIAQDRPKWRKSLLQGSQY
FETSRRQQEMEKRERQKQRVADQIKNPAPPTPHGNTCPSCSRVCRSRIGLVSHLRTHR
>Tad1-1_BG_pol#LINE/Tad1 Tad1-1_BG  [Blumeria graminis]
MLSHITFNQHNTARGREILQSLFDVSIKGETDILLVQEPYLFHNTHLQTYQPISHSAYHLIPPITHQFLRPRVMTYVKKA
SQLLVMPRYDLVCDPDYQILEVDLPGEAFYIIHIYNEKPLSPSFKHHTIQRFLDLQLKLDKPFLLLGDFNLHHQLWNPLI
QSTNPLANSLVQYLEQTNAQLINCSSVIENYGGTFHRANSKSTSIIDLTFVAGFKQLIWQDWKYGESTGSDHELITFKAL
LPQVNDLLTDNNVSSLPSRLNTKKADWKLFHLELQAKEEFFQKLLDDAIQAKDYDQIASLLQQIVQNAAQISIPTMKITP
RSKPWWTIELTQLRMRFHRIRRCFKKYPGLDLADDARAARNQYFHKIQYNKKEHWIQFLEKAKDKTIFTAYNYSRPERTQ
STIIPTLKCSALDNDLGRSATSFKDKCEALIHTLFPGPSTSTSASQEINQNLFDQPNITAPSSNFNLHYSCKTDTNEWDW
PTLTIEEIINAVPNKSTAPGLDQIDWTITKAAIKAIPKFFFMAYTTLFNSGYHPLRWRQAVGIIIPKRNKKDYSNPKAYR
PISLLPCLSKLLERIFANRLAFLANTTNNLLHETQMGGRKQRSAIDTALLLQDFVEQNRLKHRTVSTVLLDILGAFDRLE
PKVLVSVMHKLQLPTSLISWVTTFLSGRTMRLQFNGQLSEEFPVTGTPQGSPISPILFLISIRFLFPPQQEVNYLQLSYM
DDISISVASTSIKKNTDQLQQILGGFMERASKLSVTFEMEKTEMIHFSHHKLPLTNELTLSNQTALAPKEVVRWLGIWFD
RKLTFKTHVEKRLQLAHGALKRIKQLASNTRGLPFHALRQLYLSCVLPVLDYGSVLWFKKRGCGALSAKCQRLQNQALIM
ITGAYHNSPIKALEVEAAILPTKVRQLKQTFNYALRILRLQKTHPVKDKLISPLQDELSFSTEVDLGVFEYLDQEQTQII
RIGQLLQSFIKYTNLEQLDASWAPPWLQTRLTIDISHLPKEEAALGHKQLTDTIPPTTAIVYTDGSLMPGKGSSIGFVIY
LPVTREMKCYSFNLGQTMGITDTETFCILKAIRHLKKISPNGQYHIFSDSQASLLRIQTKQNSFSHQVRQEAENCSIHLS
WCPGHVGIVGNELADNLAKGASKKKVLKRNKFTSHAFLKQKAKELVLKAWAEDWKSELFREEEGRKSCGLGKFYRIQAQL
STPNFTTKPINFQGYSRLIESSYFQARIGIGNVRAYLFKIGKTKDESCNFCLKQKQTMQHLILQCQMFKKERKESFQNLE
PLTLPIIFRTKRGQQALLEYLKTSRCIFLHKGE
>Copia2_CR#LTR/Copia 63-5388 1 frameshift; masked the G-rich AA 292-319 and several mono-AA strings (e.g. SxxS) to avoid false masking. [Chlamydomonas]
MSDTSGKPQTILAEDATNFVSWRRDLSYFLQTKRLHLYLQTPIPPQRALYALEEDQQALGHLGMSCSEGIWDLISGARTT
VDAIGIIEGEYRRASDGKLVALDRDRSSFAMLVGERLPAYFQRARRLRDDIRAAGGNWPESDMRLRLLMGLRSEYHPAKS
TAVGMADRSLLALQRMLEDWESLAPQPGGLGEAGYALTARPSGLGSGGSSSNAVGVAARGLPAAGPWGHSRGGGSAGYQG
GSSSGGSNEQCWYCFVQGHQRRNCNVRVLDEKAGIFRANIRVPPPPGKGQPXXXXXXXXXXXXXXXXXXXXXXXXXXXKP
FTGRGTVLAVQDGGEGAAEGSSDDDPNCNCADASGDMFGGSSCSVANDGTHHWGVGQAHDSGSSSSTAGYSHAHAGGGSx
xxSVSAGLGCAGGCERVGCCGVSGDSTLHLPNSGGSSSVVPGRADGCSAAGVRMPLLPGYSRTDDDGDGSSNSSSRSGGS
AACCFTGFPGLGFRRLFKSRYSRDSRGSSCSxxxSAEPASAGGCDVAEDSNGGACYSHTLPPNTSxxxxxxxSRSCRTGF
CAPTADGAGDGAATTYQLLVDSGAFRHITAHRHLLSNYTPSRVKMVRWGDGHIGAVQGEGMMSMLSGGQLLHVHNVLHVP
TSELSLLSVIALTSNGSKVVFEGDGVQVVRGRRLLLQGRNRNGQYILSNLRLLSTSTEVPIMAPATASTAESSGSSTSNG
TSTAAPAGxxxGNGRFAAPTGGGDNSSGAAAPTGGGETDSSAATQEVAGSxxxSRSSSGLSAQVQAALRLHRRLGHLGFS
SIKRMVSQGMVTGADVSLSAVRDAAELVCSKCMEAKAASAAFPRSSSGATTVPLQLAHSDVCGPFPHQGRGGAQYYITLL
DDATGYGLVRILQQRGQAYTALQEMVAEMESLYPGGSRLRTLRSDNGGEYVSLQLEQWLRSRGTVHQYSAPYTPQQNGAA
ERVNRTLQDRCRALLLEADLPNGLWPDAVSYAAYIRNLSPSAGRNVTPYEAFTGKKPDVSSLRTFGCRVFVMVPAEQRDK
LGARANVGTYLGPERNTAASRVKVGNGMVVSRDLKWDEAIRGPASRRAGTQFGDGVGDSSSNDAAHAAAAPAPGVPAQQT
QMGPxxxxxxPSRPATRSQHPNLLPPINPVTAAASAVAGGGSSSSTATAAAAATESDDEEVPPLAPMSDDEDYEPAGCSS
ATAAVAEPFPGEPQSYEQAQRARDADKWLEAMQEEMASQRENGTWVVEPLPPGTRVLANRWVFKLKPGDETQPPRYKARL
VAKGFQQREGIDYDEVFAPTTCSVSLRTLLALAAEQGLLLEQLDVKTAFLNGQLDEELWMQLPQGFEEETASSGNGGAGG
DGTEMASNGSGGSSCSARAAQECAGCSKNSSTSVSGNEGGRGGEPIMACRLLKSIYGLKQAPRCWYIKLCEQMGGLGFTP
SAADAALFVRHDAEGPVYVLVHVDDMLIAAGSAQQMATVKAAINGCFKVRELGEARVYLGMRIIRRPDGKEIKLSQRAYI
EDLLQRHGMVDAKPRSLPLPPGTRVLAAALKDLVLSDSKQYSALVGEMNYLATNTRPDIAFALSLLPVGHAxDGAVLQGR
DSGCRHCQWNGRGRGGGSDGCSFVGYSDADWAGDPVTRRSTTAFAFLCNHVAIAWCSKRQKTVAASTVEAEYQAGAAAAR
EALWLRKLAADLDLEEGAIPINIDNQGALSVARNPVTSSHSKHIDVHHHLLRERVARGEVAVRYCPTELMVADILTKALP
ANKFCFCRAAMGVA
>Copia1_AG#LTR/Copia 151-4122 [Anopheles genus]
MSESHVTIEKLNDQNYAIWKFKMELLLAREKVLTVVKDSKPASPDAAWIANDERARALIGLSLDDSQLIHVMQTSSSKDM
WDALKGYHERSSLSSKIHVMRKMFATKMTEGGDISNHLKELCSLRLRLIALGEEMKDPSFVALMLSSLPKSFDGLIVALE
SRPDEDLTVDYVKGKLLDEGRRRADGADEDKALLSGGKNXTKFWKDRKLTTNKEKQCHYCKKNGHIRKDCRKWAADKRSK
LDGESVNVANEDNREEVCLFIGEXNETGPWCFDSGATSHMTNDTSILKLIDKSKQSSISLANGDSIKSAGVGXCKLFSMD
GNGKRKKVSLDXVCHVPSLTTNLLSVSKITDNGFEXXFDRXGCRVLKGKQVLLIGERKGGLYYLKQTEQAMLVDKNHEAS
CIHLWHRRFGHRDIEAIMKIARNNLGSGLNINRCHVKSICGSCCEGKMSRDPFPNSSSSRTSGVGELIHTDLGGPFEVST
ARGSRYFMTMVDDFSRYTIIYLXQNKCETENRIREYCXMMKTQFGHYPKVIRSDGGGEYRSNSLKEFFVDHGIVHQQTAP
YSPQQNGVAERKNRYLVEMMRCMLAESNMDKVFWGEAITTANYLQNRLPSSLLESTPYEMWHGKNPSYEHLRVFGSEAFV
HIPKEKRRKLDKKAEKLVFVGYADNQKAYRFVNLETKTITISRDAKFLEQCEIEKIGTKPKPTTSGGVVVLPLGSTPSLC
RAEETTTRENIVQMEASAESSCIRESNMNDTVDXLDVTPYNSASDGELSDEPGAIEMHQSVRRSXRTTKGIAPVRFREES
YMAGSSEQNEEPRNLKEVFVCAAREKWISAMENELKSHEENGTWDALVELPAGRKVVGCRWIFKLKRNAAGQVIKHKARL
VAQGYSQQFGEDYDQVFAPVTSHTTFRLMLAIASKTQMKLRHLDIKTAYLYGDLDQELFMRQPPGYEXKGKEHLVCRLKK
SIYGLKQSARCWNQKLHGVLLEIGFQQSAADQCLYIKTEDGKRVYILVYVDDMIVGCVDETLIDSVYHALTEHFEMTDLG
PVSYFLGMEVKXEKGNYSVSLEGYIEKLIRKFGLSEAKTAKTPMDEGFLKQQDSSSILKDSTQYRSLVGALLYISVCTRP
DIAVSTGILGRNVSNPTESCWVAAKRVVRYLKATKHFKLTFNKAGSDLIGYSDADWAGDTITRKSTSGYVFFYASGAVSW
ASRKQTSIALSSMESEYISLSEATQEQMWLTRLMKDLGEHIENPVKIFEDNQSCICFVNSDRTNRRSKHIETKEHFVKQQ
CESRKMMLEYCPTEEMVADILTKPLGATKQRKFTEMLGLHGTR
>Copia2_LC#LTR/Copia 73-4972 via tfasty with ATCopia43_54-5123, 1 frameshift. Could be two ORFs for gag and pol. Copia1_LC very close (mostly differing by ambiguous bases) [Lotus corniculatus]
MAATTSETQRDGYNAKPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTADQKKLYSQHHK
ARAILLSAISYEEYQKITDREFAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPL
NKSYTTKDHVIRVIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLRKKSIALKSKSEKAKVEKSKA
LQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKYKGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPKLK
KDKKPKKHFKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDKEAESKEAVDSDSESEGDPNSDDENEVFASFSTSELKH
ALSDIMDKYNSLLSKHKKLKKNLSAVSKTPSEHEKIISDLKNDNHALVNSNSVLKNQIAKLEEIVACDASDCRNESKYEK
SFQRFLAKSVDRSLMASMIYGVSRNGMHGIGYSKPIRNEPSVSKAKSLYECFVPSGTILPDPVPAKVAKNPLKKGSFSMT
KYHANIPLKYHVETPKVIRTSGVTNKRGPRKWVPKDKIIYVADILDSSTENQSWYLDSGCSRHMTGERRMFRELKLKPGG
EVGFGGNEKGKIVGTGTICVDSSPCIDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIY
KIRLSELEAQNVKCLLSVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVS
TSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFE
NDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYE
LWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLV
EKFADLSINVSDKGKAPEEVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRPSEETLLSLKGL
VSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEG
IDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPR
AWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQV
DQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCAR
FQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIAL
STAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFV
DTDHQWADIFTKPLAEDRFNFILKNLNMDFCPE
>Copia3-NVi#LTR/Copia 181-4095 [Nasonia vitripennis]
MAGEISTRSLVKFNSKNFQHWKFQITAAFVANGLLGQVDGTVPTLANKNDEEGQRWVKEDAKAMFLISSAMETEQMENLL
VCETARNMWERLTSVHKMKSQTHKLLMSQRFHEYRMDPNDTIVQHISKVQNLARQLIDIGENIPDLVIMAKILASLPAKY
RHFRTSWGVMESTRQTIELLQDRLIEEEAYKTAEEKEETALAATTRNATQGAPKFNAKKKKNFRKSKNNIQCYVCSEKGH
YVRECPQKNSKQEKESRDNCALVASSRTATGHGQGDLAQRDAGVYFSEPTSEQRKKILNAKLEDIWLTDSGASAHITFRR
EWLVNYRPRYEGSTIVLGDNHECAVVGEGSVRVKRLINGEWLDAQIDNVLYVPSMGKNLYSVEVCTTNGLNISFSGDVVN
ISREGEIIATGVKQTNLVYRMCLLVQTSEQREANVATADVKVWHKRMGHLNLRSFQSLVSKNLVKGVSVSGADEFFCEGC
QIGKSHKLPFSKEVERSTESGEMFHSDVCGPMSEVTLGGASYYVSFIDDATSYRVVYFIKHNSDMTDRFMTFEKLIRNKF
DRTMKTLRSDNGKEYVNRRLEEYLESRGIVHERTAPYTPEQNGTAERENRTIVECARTMLEASKWPNTLWAEAVNTAVYT
LNRVLTPSKNKIKTSYELWTGKKPDLSHLKVFGCSAYKYVPKIHTRKFDDQATKMIMVGYEDNSTNYILLCPENMKVSVA
RHVKFNEAGIGLEKAEKTEEVDDEDKEDLLLVPETNKEVREDVNNPPRNPEKVKEVENEDNGIGIRPSENAAKGAAESVS
KRQTSIPPAQRELRDRTKLQKPAKSLVNIAEIKLPTTFREATSGPDSEKWREAIQEELGAHERIGTWVIVPRQENTRIIK
SKWVFKVINNQSTGEARFKARLVGKGFMLEEGIDYSETYAPIVRYDSLRVLLAYITLEDMEMVSFDVCAAFLYGDLEEEI
WMEVPEGVHVEKVDSGSVVCLLRKSLYGLKQAPRCWNVKFSNFLRRFNFKEREADKCVYVGELEGHTVYLALFVDDGLLA
SKSSQIINKILNELRSEYSITVGDASYFVGLQISRNRTEKLMFVNQNAYTQEILAKYGMGNAKCMSVPVDPNVHLLAADP
DCKNDCKAPYREAIGSLMYLAIVSRPDIAYAVNLLSKFVCNFNEAHWAAVKRVFCETWSSQRQKMVTLSTTESEYVAAAA
AAKEICWLSKLENGIGCRCEDGVTLLVDNQSAIRLAKNPQYHKRTKHIDIRYHFIREICESGEINIVYVASENQLADIFT
KALPRDRFLHLRQSIGLVSEKELLE
>Copia2_TP#LTR/Copia 112-3476 via tfasty with Copia1_TP, 1 frameshift and 1 stopcodon. [Thalassiosira]
MSSLEQKSIKVIEFTGKDKDWKIWSRKFLAQANRKGYKKLLSGATAIPTESEYTAAAGGSTDAEKLTVKLWQLNELAFEE
ILLSINGQTKQGKIAFNLVDNCTTAEQPEGNCKIAWERLVHKYAPKTAPSYIQLKKDFANSKLASVDTDPDEWMTDLECL
RSEMNKVTIPGKTDMSEVDLIIHILSNLPEEYEVAVSELEEKLKNTYRPLSMETVREKLNSRFERITKNAEAKEEEKALA
AFKKQYKGRCSNCGEYGHKSGDCSERDKPSSGTGNKTENRFNGECHYCHKKGHKKEDCRKLKADNAKKQKEQAKTAIDEI
DEDDKSVDESIAELGFVGKDPASKKVTFKNVELDQAETAMVCTIDGAKYPSFTEDTMFGDSGASCHIVNSDNSMYEVEHI
HESIGGIGSDVKATKKGKLRSLIKQADGTSTVKVLQVKYCARANENLFSITQELSKGAKLGSDDSNNITLDYPDGSKITF
DRRIKTRDGWVSGVDVVPIINDMAKLSQDETKAEAIKSSAKEKAININEYHCALGHPCEATTRATAKAFGVRLIGQMKPC
KDCALSKAKAKKISKVPVKRASKPGGRLHIDISSPSTKSIGGKCHWLLVVDDCTDYAxSFFLNKKSETNDIMIALIKELK
QAYDIDVKTIRCDNSGENNALQRSCKQEGLGITFEYTAPNTPQQNGRVERRFPTLYGRVRAMLRDVSVSINNKRLWAEAA
NTATDLDNMLLKQGETTNSFHKFFGKGVKSIIPMNSAKTFGEMVVVANRNNVKAKLDDRGKTCIWLGYAKDHAIGTYRVY
NPKTNKVLLTRDVTFLRESHNDWVAEEEPTSVLEIENEVDAPVATANPVSTINDADDDEDGDIPPLVNYVTDSEDESDDE
QEVVASPVTTVNQKVIREMRKLSTSYNPDANVIAQQGRVTRSLVNTDNESGRDSTVTELANLLIDVAKVAGKVKDVVPQY
IEPKTFKEAWNHPDPMQRVKWREAIRKEFRDMVKRKVWRRVKKSSIPSNRRCVKSKWVFKIKRNGVFRARLVACGYSQIP
GVLKIIFVKSADNDSDITTKNWGLIFIRSIRINLSRLGRNKLSNQRGYQMSILGEIPTQQMKEHCKCWGIYVSRFVNKFV
QG
>ATCopia82#LTR/Copia 14-4279 Wised via estwise with ATCopia47 protein (1 frameshift only) [Arabidopsis]
MDSQIQLYSHPVIHISNYVTVQLTERNYLLWKTQFESFLSGQNLLGFVNGAIKPPPAVNTLTQINGLTTEVQNPDYQAWQ
RSDQVVRAWLLGSLSEDILREVVHTITAQEVWTALAQHFNKVSSSRLFKLQRKLQTIEKLDKSMEDYVREIKRICEQLAS
IGNPVSQKMKIFAALHDLGRDYEPIKTSIEGSMDLHPPPTFESVIPRLTGFADRMAGYNAGNEVSPHLAFNITTTNGSHY
YSSQGRGNGKPGNNNKGRLNFTTKGRGFHQQISSGSSGGDRIICQICGKPGHPALKCWHRFNNSYQHEELPSALAALRIT
DVTETAGHDWFTDSAATAHVTNSTNRLQQSQPYSGSDAVMVGNGEFLPITHTGSTSLQSTSGNLPLTDVLVCPDINKSLI
SVSKLTSDYPCCVEFDCDTVRITDKATKRLLTMGHHNKGLYMLKNHSPLEVYYSSRQQAASDAVWHRRLGHPNAQILQHL
STTKAISVNKNTKMVCEACQLGKSLKLPFSASSFVASRPLQRIHCDLWGPSPIMSVQGFRYYAVLIDNYSRFSWFYPLKL
KSDFALIFPVFQAMVENQFQXKIGTFQCDGGGEFISKDFIAHLQKHGIQQLMSCPHTPQQNGLAERKHRHIIELGLSMIF
QSSMPQKYWVEAFYTANFLINLLPSSVLEKKCSPYEVLMGKPPNYTSLRVFGCACYPTLRDYATTKFDPRSLKCVFLGYN
DKYKGYRCLLPTTGRVYISRHVIFDESLFPFSSMAYIHLQPANVTPLMSAWLKGCSVQEQNQTGTSTENQDHNDQNSVPS
GRVLLREEESTGCTAGFDHVPIGNSSSSSTQQITTSEDSPIIQPLPSTTEQSTQNQSSQSASSNSESSQVQTAQPSQSTH
PMTTRLKDGIRKPNPRYGLHTQRVSYPEPKTVTAALKDEGWTDAMHEEMDNCSEAKTWSLVPYTPNMHVLGSKWVFRTKL
NADGSLDKLKARLVAKGFNQEEGIDYLETYSLVVRTPTVRSVLHLATIMQWDIKQMDVKNAFLHGDLTETVYMMQPAGFV
EKSKPDHVCLLHKSIYGLKQFPRAWFDKFSTYLIEFGFECSKPDPSLFVYIKNKSIILLLLYVDDMIITGNSSDAMSKLL
DSLNTEFRMKDMGRLHYFLGIQVQFHSEGMFLSQQKYAEDLLAVAVMSDCAPMPTHLPLQLTAIPAQDEIFDNPTYFRSL
AGKLQYLTLTRPDIQFAVNFVCQKMHAPTVSDFNLLKRILRYIKGTITMGISFNKNTYCRLRAYCDSDYGNCIDSRRSIG
GYCTFLGTNIISWSSQKQDSVSKSSTEAEYRTLSDTASEVTWLGSVLKELGIPLLDTPEIYCDNLSSVYLSANPAFHKRS
KHFQLHYHYVRERVALGALIVKHIPGHQQIADIFTKSLPIKPFCDLRYKLGVDVPPTPSLRG
>Arthur1_Cin_tp#DNA/hAT-Tip100 198413053 ref|XP_002124374.1| PREDICTED: similar to zinc finger, MYM domain containing 1, partial (N terminal 150 AA probably wrong) [Ciona intestinalis]
LIKAEHKRQATRKKIAETASNSQRLSSWLIQPETSEHRDSLATAEQVTLVSFVSDDGNCITQNLDHSVQESCSNASETLV
GLNNEEDKEDVSSRETESTPLLVDVNSFNTDTSKENFDGLDASTNDDFPGIISNPEIKKTIIAAGPKQPKGPFPKDPLKN
GRCSFSLQNLWGTAGLNDWRHLSQQIRSHESSALHAETCVVYDQWRNSKTIEEALHGSLQEKTNFWHKVLERLLNITLML
AMCNLPFRGSSEDFSKDRKDNFLSIIQLLAKYDTVLDILLQLPKGSPKYLSPSIQNELISLLAEEVLRDIKSELQSAPFF
AIILDTTQDVSKKDQLSEVFRYVKIVYHDDGTPSELKVVEAFNSFTEVEDSSAIGLHKLITDSIQQKRLDIKKCRGQGYD
GAAVMSGKYSGLQKRIQDVAPHAYYVHCASHNLNLVLKDAMEAVTETRKFYDTIESVYSFFGHSIVRWQKLQNVQECSSP
NPTLKTLNPTRWSGRYDAVYALKERFFDVMKCLTHIILTSTKPKERDEAMTIKKQMENFDFVFMLVVQCKVLQIVNIPSK
AMQCKTIDLISAHKLLQTAAHDIAQLRRSFDAVIKEASSIASQWGLPRQFLNKRAKKTKTYFDEVSEGITLSDPKKRFRV
TVFHPMMDKLSCQLINRFEGMKSVVTTYQVLEPSFLSSASHLDIEVEAKKFADKFADDVSPLFPSQILSIKTSFKEKIEH
LKSAKEMASFLIVENASLATSYPDVCTAYMMYLTVPVTVATAERSFSKLKLIKNFLRSSMSQERLSGLSLLSIENERAKN
LDFRKVIQQFASVKARRKNF
>ATCopia85#LTR/Copia 21-3611 via tfasty with ATCopia90_316-4878, 1 stopcodon. [Arabidopsis]
MTASSLDLSLFTTDQVHSLIQQLNTHLHVPEQSTPFPSATITDHGAMATTSTAGNVSIEFPSTSLRYENHSFTFQHHCLS
SLYSILPHDAWIVDSGASSHVCSDLAMFSETFPVTGITVSLPNGTRVPISHTGTVHISSTLTLHNVLYVSTFKFNLISVS
SLLMHNKCSAHFYHDSCYIQDHTRDLTIGRGTLIHNLYILKKEDTLHSSNFCGSLIVDDRLWHHRLGHPSSAKLQHLSGI
LPMTKSAIHDHCEVCPLAKQKRLPFSSNNHLSENPFDLIHLDVWGPFSVESIDGFKYFLTIVDDCTRVTWVYMLRNKSEV
TKIFPVFVKYVHTQYNSIIKAIRSDNAPELAFTQLVKDTGMIHHFSCVYTPQQNSVVERKHQHLLNVARALLFQSNMPLV
YWSECIQTAVFLINRTPSLILQKISPYEKLFKKKPDYNFLRSFGCLCYVSTLVKDRTKFTPRAEPCVFLGYPSGYKGYKV
MNLSTNVISISRNVIFHETSFPFRNVPSNLPTEDLFHHIILPMSTPVALDTLPVHHTLPNHASASSSASHSSATSVTLET
VIPITGQGDLPIAKPKRSTRAPGYLSDYHCNLIETIHTQPLPILPNKTTPPQFLPSPKIANNPSSKSKKSKVPQTPIKTP
SETPSVLYPISSVVTYNHLEPFYQSFVLSCSLETEPQNFKQAMAHPHFPKAMDLEISALEQNGTWIVESLPPGKNVIGCK
WVYTIKYNPDGSIERYKARLVAKGYTQQEGIDYIDTFSPVAKLGSVKFVLGLASSFGWKLTQMDVTNAFLHGTLDEEIFM
SLPQGYTPANGASLPENAVCRLKKSLYGLKQASRQWYHCFSTVVLRAGFEQSPADNTLFTRQSGTSFIALLVYVDDIMIV
SNCDVELQKLKDALHGAFKIKDMGAPKYFLGLEIARNASGISVCQRKYALDLLATTGLLACKPSSVPMDPVVHLTKDSGK
LLDDGRPYREIIGRLLYLTLTRPDITFAVNCLSQFLSCPTDVHMAAAYRVLRYIKNNPGQGLFYSAKSEPCLNAFVDADW
GTCQDTRRSVTGLCVYLGTSLISWKSKKxTVVSRSSTESEYRAMALGTCELLWFSQLLRDLKVKVTSSAKMFCDNKSAIH
IAHNPVFHERTKHIEIDCHTTRDQIKNGFLRLFHVTTDNQHADILTKALQPGPFYSLLNRMSISNLFLPNSGSVSEV
>ATCopia95#LTR/Copia 392-4498 [Arabidopsis]
MTEINTNSKIVGNTTVVETPDEVALRLAKELEKTQITDSGMDNVRRNLFGNGSTNTTIPPSASQGMMPDLFDGKSGFKTW
QEKMRYYLVSINMERYLTEDPPIVPQGTTYVYTVGGMDTWAQGDYCCKGLILNRLVNDLFDLYSKAKSSKTLWLTLENKY
KTDESGMQRFSTAKFLNFKMVDSKPIMEQVEALQRISQEIELEGMSICNVFKTNCLIEKLPPGWSDFKNYLNFKRKAMTF
DDLVRRLMIEGNNRGAHAGAQNQGHDVNVAEHKAKLKGKGKGFSIPQKNLKVSSTTNFKKSNPERKFKGKCHHCGKIGHK
ADVCKSKAKDVKSQANLTEEDMVAVVTECNMVDDNQVEWYYDTGATTHICTDRTMFSTYVKNKSNEQLFMGNTAMSKIEG
KGKVVLKLTSGRELTLQNVKHVPDMRKNLISGTVLSNNGFAVNFESDKLVLKKHGVYLGKGFVKGGLVKMSVMTVFPKNV
ASASVVEMNENPIAYLVESFTTWHERLGHVNYKTMRKMQNMNLIPKFKTNQEKCEVCVQAKLTKTPSPRVERTTEPLGLI
HTDLCDLKYVQTRGGKKYFVTFIDDCTRYCYVYLLHSKDEALVKFKEFTLEVENQLQRTIKIVRSDRGGEYNEPFNAFCR
EKGIIHQTTAPYSPESNGVAERKNRTLKEMMNALLQESGLAQNMWGEALLTTNYILNRIPHKVTAKSPHELWKGTVPSYK
YLKVWGCLAKVAVPPPKKVTIGPKTVDCIFIGYAHNSSAYRFLVYKSDIPDIHENTVMESRNASFFEDIFPCRKTQKRTR
EQRDAATSEAEDNTLGTITVEETEQEPEEQPRRSKRARKEKSFGDDFLMAFLAENVPRTYSEAMSTPDAPYWKEAVNTEI
DSILQHHTYEIADLPQGSKPLGSKWIFTIKRKTNGDIDRYKARLVVQGFRQKEGLDFFDTYSPVTRITSIRMLIGIAALR
DLEIHQMDVKTAFLNGDLEEEIYMKQPEGFVIPGQEHKVCKLVKSLYGLKQAPKQWHEKFDSVMMSNGFTINECDKCIYF
KITPTGYILLCLYVDDMLILGSNTDIINQTKNMLKRYFEMKDMGLADVILGIKIIRTDEGLTLSQTHYAEKILDRFKHYS
NGTAKTPVDPQLHLTKNSGEPVQQVEYARVIGSLMYLTNSTRPDLAHSVNVLSRYTSNPGHKHWKAITRVLNYLRYTKDH
GLHYGKEPAVLEGYSDANWIADSKNSKSTSGYIFTLGGAAVSWKSSKQTVAAKSTMESEFIALDTTAAEAEWLRNFLEDI
PMWGKPVPAIRVHCDSQSAIGMAQSTLYNGKSRHIRRRHKTIRQLISTGVITIDYIKSADNLADPFTKGLNRDQVARSSR
GMGLKPTT
>ATCopia86#LTR/Copia 14-4287 Wised via estwise with ATCopia47 protein (1 frameshift only) [Arabidopsis]
MDSSIQLYSHPVLHISNCVTVQLNERNYLLWKTQFESFLSGQSLLGFVNGAIKPPPVDNTLTHIDGLTTEVPNPDYQAWL
RSDQVVRAWLLGSLSEDILREVVHTTTAQDVWTTLALHFNKVSSSRLFELQRKLQVIEKLDKSMDDYLKEIKRICEQLTA
IGSPVSEKMKIFAALHGLGRDYEPIKTSIEGSMDLEPQPTFESIIPRLTGFADRLASYNTCMEVSPHMAFYANYSGKGRG
SFNGKPGGNQGKGGQYSTKGRGFPQQITSGSSSPGSNNTENRIMCQICGKPGHPALKCWHRFNNSYQYEELPATLTAMRI
TDVTDHNGNEWVGDSGATAHITSSHQNLQQSQPYGGSDAVMVGNGDFLPITHTGSTTLPGSSGILPLKDVLVCPNIGKSL
LSVSKLTRDYPCSINFDCDYVCVTDKATKRLLAQGNNSNGLYVLKDSPVHAFYSSRQQTMSEDIWHMRLGHPNQEVLQYL
HKNKAVNINKSSKGICEACQFGKSSRLPFSSSCSTTSRPXQKIHCDLWRPAPVKSVQGFSFYVIFVDNYSRFCWFYPLKN
KSDFLPIFHKFQALVENQFHSKIGSFQCDGGGEFTSLNFVNHLHQHGIQQLISCPYTPQQNGLAERKHRHLIELGLAMMC
HSRMPMRYWVEGFFTANFLINLLPSSVLSDNKSPYEVLFGQKPDYTSLRVFGCSCYPTLRDYAKNKFDPRSLKCVFLGYN
EKYKGYRCLLISTGRVYISRHVLFDEEDFPFHKVSASPQFITTPLRMAWQKSFQPQTSETTVSSDQNQKVYAQIDIEASA
IPIPATFPTSGDTGSSGCTAGIDPVPIGNSSLVSSPSLANVVTSATTETATTSQSSATTTETTTENRGLSVPTVSSVRQS
QRHHMVTRSQVGIRKLNPKYALLTSRVKYPEPKTVTSALKDEGWNKAMHEEYGNCQEAGTWSLVPYSPDMHVLGSKWVFR
TKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSPVVRTATVRTILHVATIMGWEIKQMDVKNAFLHGDLTETVYMTQPA
GFIDPAKRDHVCHLYKSLYGLKQSPRAWFDKFSTYLLEFGFICSMSDPSLFIYIKGKDIIMLLLYVDDMAITGNSSDTLA
TLLVELSKRFRMKDMGQLHYFLGIQAQFHSGGLFLSQQKYAEDLLAVAGMLDCAPMPTPLALQLNKVSHQDQQFENPTYF
RSLAGKLQYLTLTRPDIQFAVNYVCQKMHMPTVADFNLLKRIIGYIKGTVTMGISFNKETDCTLRAYSDSDYGGCETTSR
STGGFCTFLGNNIISWQSQKQPTVAKSSTEAEYRALSEAASEITWLCKILKELGIPLHQTPELYGDNLSSVYLTANPTFH
KKSKHFANHYHYVREQVALGTLRVTHISNQFQIADIFTKSLPHGPFSSLRFKLGVDVPPTPNLRG
>Copia3_CR#LTR/Copia 69-5081 [Chlamydomonas]
MDDSSSGLVKFKQLQDDAANYFTWLIQLYDFLTTRKVPLGVYLYTSTPPGRTALELADENGQALSWLRTSCTPNVARQLW
QAPDAVTALAYIQGLFRASAAQKLQQCDMERSCFQLEEGENMSQYFARASDLRDRIYALGGTWEEPAVRLRLLNGLPLPA
YEVLVEICNSQPQQTVAELRGYLMQHEVTKRFRQANGGHVGNVNRSRGGNAGGGGGAGGSSSSGGIVCHYCEQPGHIKPN
CAVRQADVSAGIQRASIRSPVQLQQQQQQQQQQKKHGGGGGGGGGSGSGDGAKKRGKGGGGGSGARGGARSAASRPAHVL
VVSSVDDWAEDYPSSSLIVHTFGAEPASSGAISSYSMADDGVPSASVIGDHGGCSSTSTFSYSSAGNGLSSSSYSGSAAP
PPGAGSSLLSNTYRAVTRDFGGSNSSSTGAGVSSCSSGVAGPAGLGGRVLVVCDVSRGSMLSPSAGGGGSDDASGSVGGS
FASAAAFDVPVIDSGTFAHITPHRRLLHDFVVRPRVSHVLWGDGRSSPVGGSGTLRMLSGQQRVDVTGVLYVPDAHLSLL
SVRRLASSGAKVAFEGESATVELAGRSILSGRVRDGQYPLSVTMLPVLLAAPAMAPPAIGGGTAAPVSGGGAAATGSDSS
FLPSSAAAPSGSGGTTSSSLNSSGASSSSNGTAASSGGGGTVSSSSSSSVTALSAAHRLHRRFGHVGWHSLMQMVNGSLV
TGLDVDLSALSQAAESVCSTCVEAKAASSPFPDSSSEPQQPLALAHSDVCGPMPVMGRGGSRYFITLLDDATGVSAVRML
TTREHAGEALQEMIVQLENCHPGGGKLRNLRSDNGGEYRSEELQQWLRERGTVQQFSAPYMPQQNGAAERLNRTLMDRTR
AILFDAALSSSFWPEAVTYASHLRNLSPSSSCSSTPWEALTGVKPDISSLRTFGCRVYVTLPADQRSKLNPRADIGTYLG
LQRNSAAYRVMVGGKVVVSRDVRFDEDVRGPASRLAGVPFGSNSSAAAPAAVNPPAVAESPAPSPAPAAPPSRPATRSQR
PVLTPPLSAFASAAGGGSHSNSSNSAASAAAAAAAQLFDEDSDDDETPPLAPPSDDEDSYGVSTATTAGVGEPSSYAEAS
SGPHAADWRKAMEEEMESQRDNKTWELAAPPPGVRLLANRWVYKLKPQPGGAPRFKARLVVKGFAQREGIDYSEVFAPTS
RYVSLRAILAIAAARGLSLHQMDVKTAFLNGDLDEELWMQQPQGFEVSGDGGGGDTGGGGGADGGGSGGSSHRSVPLACR
LLKSVYGLKQAPRCWYRKLSEELGGLGFTPATADPALFVRHDEAGPVYVLVHVDDLLIAAGCSAQLAAVKAAIGKCFEVR
DLGEASTYLGMEIKRDPSTGDILLQQRRYVNELLQRHGMTDAKPRSLPLPAGTRVLAASEQQPVLDDGGPYRSLIGGLNY
VAVSTRPDIAYALSVLARHMAAPTKAHLALATGVLRYLKHTVDMGLRFSASASGGGGGAGSSSAGGGAAAGYDAGSFVGY
CDADWAGDPNTRRSQTAFLFALGKTVVSWCSQQQRTVAASSVESEYQAAAAATKEALWLRKLASDLGLRSGAVAIRCDSQ
GALSLARNPIASSPLSKHIDIQHHLVRERVARGEVAVEYCPTEQMIADALTKALPEAKFFFCRAAMGVST
>193685913_Api_tp#DNA/hAT-Tip100 gi|193685913|ref|XP_001952430.1| PREDICTED: hypothetical protein [Acyrthosiphon pisum]
MSEMIWSSSNPNTSETFVDSGESPIDFDTNFTRTGNPSTSKSFVDSGESPVDLDTNFISTGNPNSSETCVDSAESPVDLD
SNFISTGNPSTSKSFVDSGESAVDLDTNFTSTSNPNSSETCVDSAESPVDLDSNFISTGNPSTSKSFVDSGESAVDLDTN
FTSTGILFDNDPDGFCMLNRLPPAFIDFLLIKGPAQPTHEDISSKEFPKDKSGRSFQVAWYWKKLPENTQIRRDWLSYSK
IRNKAFCHHCILFGRKGQKCWTQEGFSAWSRAVSSIQLHECSDFHIEASLRFKMRLTALPILPLLEEKNKQEKAINREIV
KVLIDATLFLSRNCLSFRGHQESLKKPGNRGNFLNLIDMMSKYSPCLASYITQLEMSTKKPEVNFLTKNSQNKLISSISN
SIKSSIKNELQHSKFFSVSIDSTFDYSRREQVSFVVRYLQMNGQICERLLALKESSITTGVRLFKLFEDICSSLCLDWQN
YLIGQSYDGAQNMRGEYNGLQSFIKEKCPTATFIWCSAHRLNLVVAKTVGCSLDAVDLFGNMETVYNFICNSKKRVAYYE
EVQIKYSGTKKNRRLKRVSTTRWMSHDRALQTVLETYDSVIDTLDYVRKTEGPDDHSVGHMCGYLDLLAAVNSINETKKI
CLKLRKDESIFHHLTKEINSFIEDKKDLEFSEFKIVRTRRKKKMPGELNSDESIDDPLINFKIQTVLHSLDTTLNYLDQY
FNNSAVGIYKDLSLFSIKRMIEIKNNLEKMPDDAFVEFCKIYSKFLNIDILKSEYLKFCQIYKMFEETTALPTSFHRDVQ
NSNSDESDNSEEEIVLPKRNPISVINACSMKNVYKVVHDNNLASVFPVLHTALKIALILPVSSASTERVFSKLKIVKSRL
RTTMTQNRLEDLLIISCERDISEVIDHDNILKKFAEESSVLTKHLM
>221120077_Hma_tp#DNA/hAT-Tip100 gi|221120077|ref|XP_002159236.1| PREDICTED: similar to zinc finger, MYM domain containing 1 [Hydra magnipapillata]
MNINENLTKISEAIENESSEIECEIINESKNIDITNDEILAVPEIFDFCDQTLLVESQPSDVNLLEKETTFSDSVGKFAK
LCKLLSECELKLDEVKNTDNLHLEKLLIEMTELASELGPHQVKLNNFPINKDIDKRKQNRFSSLWYKEYPHLEYSILKDS
AFCYVCCLFPNGPGRENSEVAWVENGIRTWHKMKSRGKKGKRGKLSEHFSSKSHKASSLDYCNYCNSAQHINLLLDKKQR
QIVISEKEEMESNKCVIKVLIDLARTLGRQGIAFRGDDRDENGSFRQLVYFMSRHNLVLKRWLSNIKLRKYHVTYMSAKS
QNDFIHLLGQDVQSKIVSEVNQASMFSIMADTTPDVSHSDKLAIAVRYVDNNCNIKERIVQICEVADKTGDGIADLIISI
INNLQLDVNSVVFQGYDYASSMSSNIKGVHAKISEKLKRVVPYIPCQAHRTNTFVEHAVIRNKMVSNVFEVLEMCYVFIS
SSTKRFSLLNSKLKFIENSLKLRNLLKTRWSARSESIQAFWISMESIVECFYEISQSDLFDKKTKDQALAILKKIVNPDF
IIMLMLIKGVIAKTKILTDELQKVELNILDAKMIVLSTIQSLERNRKEEFEVHCEIDAAIKICSKYEIDALKIYEDRHRR
RVTPKRYDDNPDTLCSRNIYQYYTQQLNCVLDCLIYEMNENLLASWLSIEPFSLLQQSTKTFTIKDVEKLCLLMPNNGVN
TDAHLFHAELEIFMNTFTKSDAPTNNEKLKLSWQRQNIFPGVFKAFKLMASAPVSVASDERTFSKLKIVKNILRSTMSDA
RLASLILLASEKDLVDNIDLDVLVKKWSITTQRRIQIE
>Copia25-PTR#LTR/Copia 1298-5265 via tfasty with RIRE1_1303-5256, 1 frameshift and 2 stopcodons. [Populus trichocarpa]
MSNDNLKFSLRSIVEKNKLNGTNFLDWERNLRIILRSEGREDVLATPVPTVTNTSSDEEKATATRVKSEALPVTCLMLAA
MEPDLQKRFEHSDAYSIITELKTLFQDQARIERYETHKAILDSHLVKGKPVSPHVIKLTGLFKRMENLGTPYDQELATDI
VLRSLHDGFAPFRMQYHMNGLKHDLNELHSMLKNAEGNIIGDKKKEVLNVNNGKGFKRVAKSKSNYQGKSKQVAKPKDGE
KPKVAADHDCFYCKTKGHWKRNCPKYLEDKRNETVSSTSGIYVIEIMTTNVLTLDNGPTWVLDTACGAHITSYVQGLRNS
RQVRKGEINLCVGNGASVAALTVGDLSLSLPSGLVLELNNCYYVPCITKNLISYAVLDHENFEFSSKNGCISIFKNDIFY
ATARVSNGLFVLDLKSELYNINNKRQKLKSLSEAYLWHCRLGHISVNRMKKLHKDGLLKDMDYESIDTCESCLMGKMTRS
PFKGTFERATELLGVIHTDVCGPMSTxARGGYRYFITFTDDMSRYGYVYLMSHKSKSFEKFKEFQNEVETQSGKKIKALR
SDRGGEYLSHEFDHHLKNYGIVTQLSTPGTPQLNGVSERRNRTLLDMVRSMMSFADLPLSFWGYALTTAVLTLNRTPSRT
VDKTPYEIWTGKVPKLSFLKIWGCEAYVKRLQTEKLAPKSDKCYFIGYPKGSFGYYFYNPTQQKVFVARDIVFLEREFFS
NKSSGRNIHLEIVQDDEEQQTQQQEDMDDVDDEMITFEGLGPQIIQEPEQEDLQTVMNHVPDPVVEQVEPTRRSERPRVQ
PRRYDDFILNESLDVLMLELSEPSTYKQAVTGPDSKKWLEAMRSEMDSMFENQVWDLIDLPDGVKPIGSKWIFKLKTDTD
GNISVYKARLVVKGFRQIHGIDYEILANGVKDPFLNRFLSEEDVYMTQPEGFEDPNEAGKVCKLKKSIYGLKQASRSWNF
RFDEKIKEFDFIRCEEDPCVYKKFSGSKVAFLVLYVDDILLIGNDIPMLESVKEWLKKCFSMKDLGKAEYILGIKIYRDR
SKRLLGLSQGTYIDKILNRFKMQDSKKGFLPIQHGIYLSKKQCPKTPVELEKMKQVPYASAIGSIMYAMVCTRLDVAYAL
SMCSRYxSNPGEAHWSATKNILKYLRRTKDDFLVYGGDEKLIVQGYTDASFQTDRDGFESQSGYVFILNGGAVSWKSSKQ
DTIADSTTEAEYIAASEAAKEAVWIRKFLDELGVVPSISVPIDIYCDNNGAIAQAKEPSSSSKSRHVMRKYHLIRRIITM
GDIRMCKVHTDDNIADPLTKPMPRPKHESHTRAKGLKHIGEWL
>Copia49-PTR#LTR/Copia 74-4489 (1 stopcodon) [Populus trichocarpa]
MASDKTESSSVPVIQVQSENSSFSTNVTLTESNYDVWSQIMEMQIAGREKLEYLVSNTIPEKTDPSYAKWYAENQKIKGW
LLTSMSPEIMKRYLRLPTAHEIWNALAKAFYDGADESQLFTLNQRAFSTKQVGRPISTYYGDLVEIFQELDHRDKIVMKD
PDDVIAYKKSVERLRVHIFLNGLDEEFEQIRGEILRRDSALDLEETYAYVCRDSIRRNTLNGEPGHSEPSAMIARRSKYQ
RPQNLKPDRASGSLNHNHSIGSQNRSYEIRAARPERMCTHCGETGHTKLCCYELIGYPEWWDFSKAPRKRNLKANPHVSV
AVAEPNHMFGKKSGKDSSSGAITGNARDTAENTGADAVNAGKAFHTSTSVRNSEWIIDSGATNHMTFNNNIQTIQPSNHH
EIFTANGTPSSVSGEGTVTLTKNLSLESVLIVPSLNHNLLSVAQITCALMCVVIFWPNLCIFKDIQTRKTIGYGTRRGKL
YYLDLIPASSNQLAQVFSTNTANEHQKSEIWLWHRRLGHASFGYLQKLFPQLFSQLIVSDFKCDVCERAKSHRVSFPISM
NKSPAPFMVVHSDVWGPTNTHSLNGSRWFVSFIDDHTRMTWICLMKSKSEVSSLFQQFHKMIATQYQTNIQVIRTDNGGE
FINHSLKDYLNTHGIIHQTTCPYTPQQNGVAERKNRHLLEVVRAFLFEAHMPTSYWGEAVTAGAYIINRVPSSSLQFQTP
FEVLHRLVSAPTMPNLPPKVFGCVAYVHLHKGLRTKLEPRGLRCVFVGYALHQKGYRCYHPPSRQLYVILDVVFHETTMY
YSSQTKENDEVQIATKPTDNVDIIAHGNQLIDTLDSLETNEECPVNENTEEHQDREEYTSENGPEIVDGNQDTLEGPTAS
HSVPVNQLSSPVDSRLESHDIHPVESLKELPNRVTRGKPKVNYEPTLHSKLKYPMNNYVSYHRLSNEKMAFVHQLSVVSI
PNNVQEALVDPRWREAMNEEMKALQKNSTWDIVDLPKGKKPVGCRWVFTIKYKADGTIERCKARLVAKGYTQTYGIDYME
TFSLVAKLNTVRIILSLAVNLDWPLHQFDVKNAFLHGTLQEEVYMELPPSCKQQTEGNKQVCRLRKSLYGLKQSPRAWFG
RFTNFMKTVGYTQSNSDHTLFLKHNEKHITILIVYVDDIIVTGDDSGERKRLHEHLAREFEMKDLGELKYFLGIEVSRSD
KGIFLSQRKYVLDLLSETGMTACSPASTPMEENLKLHGDSNQVPTNKERYxRLVGRLMYLAHTRPDLAYSLSVVSQFMHS
PSEEHMNVVTRILRYLKSSPGKGILFTKGHNLDVNGYTDADWAGSIQDRRSTSGYFTFVGGNLVTWRSKKQEVVARSSAE
AEYRGMAKAICELLWIRNLMIDLHIKQVNPMKLYCDNKAACDIAHNPVQHDRTKHVEVDRHFIKEKLEEKLIEVPHVRSQ
DQLADILTKALSNHAFSTILSEIGMSDIYAPT
>Copia33-PTR#LTR/Copia 119-4507 via tfasty with ATCopia52_21-4231, 2 stopcodons.  [Populus trichocarpa]
MVTPSQLQIVQSPITSLLSTVATAVPIKLDDTNYLTWHFQMKILLESHGILGFVDGSRQCPSRFNADSDLEGTETDDYQV
WKMHDRALMQLLIATLSSTAISYVIGCVSAHDMWIQLKDRFSTVTKARIFQMKSELQNIKKGSEPVSHYLQKIKDARDHL
SAAGVSFEDDDIMILALNGLPSDYNTFRCMIRGRDNTLSLKDFRSQLLAEEATLEHTxSASPFVSAMLAQNQTFQGKALV
LDEGSSPSHSHSHLQSQGYSSNSKTFPSSHPSSGFNGGFYGPTGGFNGPNAMFTNSGHSNRGSYFKGRGRSRGHYQSGPR
PYQVSSPSPGILGPGIDIPICQICSKKGHIAADCYQRHNQSPSSTSSVQCQICWKFGHSAIQCYHRGNFSYxGRPPSTNL
SAMHANFPSSTSTEQFWVADTGATTHMTSDIAQLNLATPFSGSDTIATADGSGLSISNVGSSILDVPQCSFKLPQVLHVP
KLSQHLLSVHRLCKDNNCRFICDAFGFCIQDKLTGRILLQGLSRDGLYPIPLSIPQSRLSQSFSLSKHQFCYLGHQVKTS
LWHKCFGHPSNKITSALLHQSKIPFTSDHSKSVCTACLEGKFVKLPFPYPAIKSATPLEVIHSDVWGPSPTISIDGFRYY
VSFIDECTRFTWIFPMRNKGEVYSIFVSFHAFLVTQFSANLRIFQSDGGGEYLNHSFKQYLLAKGIIHHISCPYTPEQNG
LAERKHRHILETAITLLQTAHLPSKFWYHACATSIYLINRMPCSILQLKSPYILLHGSVPVLTHLKIFGCACFPLLKPYN
THKLQPKTSTCIFLGYAGQYKGYICFSLLTNKCFVTRHVIFDESIFPYTSVSAASSSPSHLSPLVPPSVSLDTLPSPTLP
SPIISSNRSGLDSTTQLSPPEDPDFHPENLCVVLPLSPMNLHPMTTRSKNGISKKKAYSTTVQSLDFSSAEPSSFKIASK
IAAWQSAIQEEIDALHAQGTWDLVPLPHAKNLVGCKWVYRIKKNADGSIARHKARLVAKGFSQEEGIDYNETFSPVVKPT
TVRLVLALVAQFHWPLRQLDVKNAFLHGILQEEVYMTQPQGFTSKIYPDFVCRLRKSLYGLKQAPRAWNDRFTGFLSSLG
FQASLADPSLLVQHSSHGTVILLLYVDDILLTGSHSSLLTSVIDALTQEFDMKDLGQLTYFLGLQVSYSSSGLFVSQSKY
IKELLDRVDLQNSKSCATPCLPYHHLLKDDGKPYSRPQQYRSIVGALQYLTFTRPDIAFSVNQACQFMHNPMESHVVAVK
RILRYLKGTLDYGIHFQPGTLNLQAYSDADWAGDPNDRRSVSGFVVYLGSSPISWASKKQHTVSRSSAEAEYRALAIAAA
ELTWIRQLFCDMHVPLLIPPLIHCDNISAISLASNPVFHSRMKHLQIDYHFVRERVIKGDLLVQHVSSADQFADILTKGL
SSPLFHHHCSNLMLGSSMHTIAG
>Copia3_LC#LTR/Copia 66-4913  [Lotus corniculatus]
MDNKEGGSVNRPPILDGTNYDYWKVRMTAFLKSIDNKTWKAIVKGWKHPTKAEVEGTSTTVVEKPEEEWTSVEDEAALGN
SKALNAIFNGVDKNMFRLINTCTVAKDAWEILKTAHEGTTRVRMSRLQMLTTQFENLMMTEEETISEFHMRVRDLSNASF
ALGEPMSDEKLVRKILRSLPQKFAMKVTAIEEAQDIENMKVDELIGSLQTFELKLSGKSEKKNKSIAFVSNTDEGDDEDC
EGENLSEALAMLAKKFNRALRKIDKRTRPNVQDMKFDNKPKFSNSQRKTKEEERSGQNKGVQCHECEGYGHIRSECATYL
KKQKKGMMVTWSDEDTEDEEEISANKVNAFSGTIYESETSDEDISDEELAETYKLLHNKWEEACKLVREKQSEIEQLVSQ
NERLKELSTKLKEDLEEWQSKFNNADVMEKANLXLINAGLQEEVATLTRKLEATHKSVRMLNSGSDMLDEILKETSKQGG
SLKGIGFDYRTXNKEDQKGSKKFVSAAKQTEFKKPRNYQLSDPLPRHVPQHVKPQLKLDKTVPWKCHYCGKNGHIKPYCY
RLYGYPQMHDKKPXQMRKZWKPKGEVRCQVAYTSFRASSKEDWYFDSGCSKHMTGNKSFLQDIRSHSTNYVTFGDGAKGK
IKGVGKLVSTESPNLNNVLLVNGLTANLISISQLCDQGYDVKFNKIECVVTTDDERVVMRGVRSKDNCYMWTSEEKAHVS
RCLLTKEDEVNVWHQRLGHLNYRSMQKXIADEAIRGLPNLSLGEGKLCGECQIGKQTKVSHKMLQHQTTTKVLELLHMDL
MGPMQVESLGGKRYVFVCVDDFSRYTWVEFMREKSETFEIFKNLCLRLQNEKDCVIVRIRSDHGREFENSKFLEFCGTEG
ISHEFSAPITPQQNGIVERKNRTLQESARVMLHAKKIPHQFWAEAMSTACYIHNRVTIRAGTSSTQYELWKGRKPSVKYF
HIFGSKCYILADRDPKRKLDPRSDEGIFMGYSMNSKAYRVFNSRTRTMMESVNVTVDDEPSKKEEAVLNEDDDGADVPAD
APATALDNESETSADEKEDKDITSNKAPSIRVQKNHPQENIIGNLQEGVTTRSRSIIAHSCFISKIEPKNVNEALTDEYW
INAMQEELEQFRRNEVWELVPRPEEVNIIGTKWIFKNKSDETGTVTRNKARLVAQGYTQIEGVDFDETFAPVARLESIRL
LLGVACLLKFRLYQMDVKSAFLNGYLSEEVYVEQPKGFTDPHHPDHVYKLRKALYGLKQAPRAWYERLTEFLVSNGYCKG
GIDKTLFVKNDKGKLMIAQIYVDDIVFGGMSNSMVEHFVRQMKSEFEMSLVGELNYFLGLQVKQMEDSMFISQSKYAKGL
VKKFGLEKAGHKRTPAATHIKXSKDEQGEDVDQSLYRSMIGSLLYLTASRPDITFAVGVCARYQAAPKASHLLQVKRIIK
YINGTSDYGILYTHDTNSSLVGFCDADWAGSADDRKSTSGGCFFLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLM
WMKQMLKEYDVEQDVMTLYCDNLSAINISKNPIQHSRTKHIDIRHHFIRDLVEDKIVNLEHVTTDKQLADIFTKPLDAIT
FEKLRGNLGIXLFDA
>Copia3_DR#LTR/Copia 118-4110 via tfasty with Copia-1_NV, 2 frameshifts and 2 stopcodons. [Danio rerio]
MGLKETILSTGDIDEKTNEECYAKLIQFLDDKSLSLVMREATDDGRKALQILRNHYASQGKPRIITLYTELTSLKKESDE
TLTDYIIRAEKAVTSLRNAKEVISDGLIIAMILKGLPDSYKPFAIHTTQSSEELTFIQFKSKLRSYEETEKFDDKPKSDN
VMKVHIASVTCYGCGNRGHIARDCRQKGVPKWCNYHRSSTHSDETCRRRQRWSQRxSKTGKADKQEEHEKEQTFVFKVSQ
TFLPDNITQNGLMVDCGATSHILTEKNNFTRFDKSFDPKSHYMELADGARMNNVALMRGDAEVVLLDVEGKCVRITLKKA
LFIPSYPQSIISVQAATTDGAKVIFQEGQNELISKDGVVFRIEEHERLYYLKTVNNNKQCVDVSVTDMMSMDKVSLTCDV
KTWHEIMGHCNVSDVLKLPEVVEGMKITGNTKLDCNVCTEGKFINNRNRKTDTKAGEALELVHTDLAGPIEPTSQDGYKY
AVSFTDDFSGAVSVYFLKNKSDTILATEKFLADSAPYGRVKCIRSDNGTEYTSDAFQSLLRKKGIRHDTSSPYSPHQNGT
AERQWRTIFEMGRCLLIEKGLPKVLWPYAVQTATHIRNRCYNDRFKNTPYFMLTGRKPDLSKMWVFGSECYAYKHNHKKL
DPRCEKGIFVGYSKNSPAYLVYNPQTEKVSKHRLVKFIRKSSAEQQTQTDEEYLEIQYRDRTQDSGNSGDAPKSEESTEN
RVLDENMESIDTDNTEVSEHDGTTDKVDTEDNKDSTVATVKASQKHYHSNREKRAPKYLQDYLTYSKDDETNVSVDYCYR
AVCGVPQTYKEALMSPEAPGWEHAMKEEMDSLKENDTFELTTLPEGRKTVRGRWVYALKENAETGKIFKARYVAKGYSQT
EGIDYHETFAPTANLTSVRALMQIAAQNNFSVHQMDVKTAYLHAPIEEDIYLEQPEGFEETSDKGDKLVCKFKKSLYGLK
QSGRNWYKLLNDHLEQNNFERNQSDYCVYRKQIENETIIVIIWVDDLIIAASSDDQLNSFKEIMKSKFNMKDLGKISYFL
GIQFEQKEGTIKMNQKRYILKMLERFGMSNCKPKATPSELKVECNINEEENNNEIENPKEYRELVGSLIYAMTCTRPDIS
WIVSKLSQTLAxPKTHDLVAAKHVLRYLKGTADYELCYKKTDKTLILIAFSDSDWASSVEDRRSTSGYCFSLTEQGPAIS
WKSKKQPTVALSTCEAEYVGLANTTQESMYLTHMYLLNDIDMYLLNDIDSSVYTCTTVYGDNQGAIALSRNPVNRSRSKH
IDVKYHFIRDAVSKGKIHIVYCPTEDMVADILTKSVSKIKILKFKGFLFGN
>Copia4_AG#LTR/Copia 112-4080 [Anopheles genus]
MSTEEANSAGPSRESSAGAAALSGHAVGSNNLAMNVGIEKLKGRENYVSWAFAMKMMLCRERCWDIVTARDDKAVDKDMD
MRALSTIALSLEKHNYSLVMDANTAKEAWEKLKAAFTDDGVFRRISLLQELVSFKLNNFSSTEAYVDAIMSTCHKLREIG
FEVSDIWVSSILLMGLPKYYAPMVMGLEASGMAMKADAIKLKILQEVKTTCHKDDEALFSRGNPNLRKGGGAMKRSTKEV
TCYNCQKLGHFAINCPEKQKHKKNNKTRAMSSVLAMGDVSECEWYFDSGASSHMAKSGVDFSERQHICHEVSTANNASMK
AITKGTVSVNCQEGAVNLLNVLEVPDLATNLLSVSKICKNGFKVVFTERKCEVFDENGEVFASGIAENGLYRLNENRVRT
FLSYEIWHRRLGHLNFQSIQRLKGMADGIQTKQTNTYNCVACIEGKHARESFPTSQERCKEKLELIHSDLCGPFEVESIG
GSKYFMTFIDDATRKVFVYMLKSKDEAKTVYEKFKSMVQRQSGRQIKLFRSDNGREYVNASMKASMERDGICHQTTCTYT
PEQNGVAERMNRTIVEKVRSMLNDAQLPKRFWAEAVNTAVYLINRSPTRALNDITPEEAWSGKRPHLGHLKIFGSTVMVH
KPKQKRVKLDPKSERCIFLGYAHNTKGFRVFNVATNEIIISRDIIVVDEGQCEGFGKEQTTPVEFLELLFAEGKDESNST
RNNPINISPTEEASDGQTEETPTRFDQSNETPRRSQRQHKLPSKYKDYVINRKFVPSSTLANEAENVSSDSDYTTPESES
DEALVVFSQREDPRNYAEAMKSEDAKQWMDAIQEELQSIEANNTWSLVDLPPGRKAIGSKWVFKTKRDVDGNLLRYKARV
VAQGFSQQFGTDYDEVFAPVVKQTTFRVLMGIAAKRGMAVKQYDIKTAFLYGDLEEEIFMKVPQGVKVEDNKVCRLKKGL
YGLKQSARSWNQRLDQELKRQGYTNCLADSCLYRKRCGKEWCYVLVYVDDLIVAGDNLDMIESLLAELKKSFEVNILGDI
RFFLGIEVEKNKQGDYFVNQRNYIKDVIISSGLTDAKPSSIPLDPGYIKIEAEEIELSDNKEYQQLIGKLLYIAINTRPD
ISAAVSILSQKISKPTQRDWCELKRVVRYLKGTINYRLRLSEKGCDNGIIGYCDSDWAENRIDRKSNSGYVFKVNGGTVS
WTCRKQSCVTLSTAEAEFVAISEGIQEALWLKLLLEELNDVQEVIIHEDNQSCLKILSGEKLSNRTKHIATRYHFTKDLI
KKGQISCVYCSTEEMIADLLTKPLARIRIQKLVSLIGLSVSL
>Copia10_CR#LTR/Copia 100-2601 (fragment) [Chlamydomonas reinhardtii]
MSEDANVAKPFQLTSANAHLWRSALEIYARWKGLALAVDNEIAPAADIEKLTALALSHVRSGDQMIYNEVAQAVATHNAT
AKDDAKWNKARKLLDKFEGHYKRMAVLHHSLWEKELRELRMQKDEEISHLFQRVTDLVMKLVWSGCRGFAEDKREELIVL
NVFSALPKEYAAVAYAATEQYRGSMYSVVDAETRIIGFHNTLASMGNEDQGSGEPSTSVAAVGVGGYRGGGGGYRGGRGG
RGGRGGRWGRGGRGQEDLSTVECYKCHQFGHYQGQCPLNAAGNGGGGGGGGGRGRGDYGGRGRGRGGAHVGRDGGDRRMW
AITAVPGVHTASNTGVASSSGRADKYSWVMDTGSPMNVSPLRELMSDFKESSVQLRGFNGAQSASIGVGSMILHVLGADG
VVNYLRLNDVQCVPEADCNLMSRETMLEAGAEWNRTYRAVGSEEHYFDCDSNVAFMTAESRAGKLWVRVVGVGPPPTNIG
GGMDGVHNTDPADGAAGPSSGANSGSQPSPGASKGVSSSSDKGVGVSTSSSAGVDSSGRSAGGSASTQRRQSGLEMLLSA
SRSFKPIIEPVPAPAEKEQPQLSREQLRLRLCAGRWHRRYGHLSMGALAGMVRNGSVTGLDVPAEVFEQLAREGHCDTCA
LTKQVSMSYKATGSRAAAPLDLLHTDIWQGDMKSRGGHLYVLTVLDDYSKLSRIALMKHKSEAPTKLMDMIREWQCHLGR
KVKEVQSDRGSEYMSQQMQEFFREQGIVHLTSAPYTPQQNGAAERVQQTIARTARAMLADADLSADLWGEAMVTANVIRN
RSPTTGNSKTPFELFTGRLPSLEMMRCVKSQVR
>Copia10-PTR#LTR/Copia 84-4418 via tfasty with ATCopia62_100-4614, 4 stopcodons. [Populus trichocarpa]
MNNLLRKAKTMPSILFFLYHSDHPGLVLVSKPLNGDNYSTWCRSMTISLNAKNKLGFIDGTVQIPPAKSQPNDYASWKRC
NDMILSWILNSISPELADSVIYSTTAQEVWEDLRDRFSQSNAPRIFQIERDIACTSQGQMTVATYYTKLKGLWDELGSYS
STVCSCGADHKRRQLMQFLMGLNDSYKAIRGQILLLNPLPDVRQAYSSIIQEEKQHSLNDTQEAAETTAMTIQRDALTAL
AVRSGQGASSRSNSFNCKPLHCSYCDNDHHVRDTCWKLHGYPLGHPKHKASRFNRQGSRPPYNKSAYPSANYVKEGPTRQ
EMQSVMNGFSDLQFQQILSIMNNNGIEQSSQPQANAAVNSSGLLQAPYSLPQLILDSGATDHITSSPNLLVNSRQNSILP
PVTMPSGEQAPITSTGTLPLNSVISLKNVLVVPSFKVNLMSISQVTRGLNCLVTFFPYWCILQDLATKTTIGLGKQRGRL
YYLVALASPTPTPKFQSSAAIATKSFCSHVISSTELWHRRLGHLSSSQLNFMANNLLNFPFKLHDACDICALSKQCRLPF
SASSISSIRPFELIHCDIWGPYKIPSLSGAKYFLTIVDDYSRFTWVFFMHHKHETQNLLTNFFSFVKTQFNASIANIRVD
NGGEFFSMRNFFRQHGTTYQHSCVYTPQQNGVVxRKHRHILESARALRFQAHLPLHFWAECVLTAVHLINRLPIPLLSHQ
TPFEKLYGKVPTYSHLKIFGCLAYATEVHAAHKFAPRATRCVFLGYPVGQKAYKLYNLSTYKFFTSRDVVFHEHIFPYKS
SPPILAHHASTPDSAAPSPVLPLSIPDAPTADYPVSNPASPTSVPPNFSPSVPSNITQSSPPLIPVQPLRRSQRHHNPPP
ALRDYICNQVTSPKPSLASSSGSSKGTRYPLCNFLSYHRYSPQLCFYTATISQDIEPRSYTEAASFPQWQAAMQSELAAL
EANNTWSLTSLPPGKTPIGCRWIYKIKRHSDGTIERHKARLVAKGYTQLEGIDFHDTFYPTAKMITVRCLLALAATQNWS
LHQLDVHNAFLHGDLHEEIYICPPPGLRRQGENLVCRLNKSLYGLKQASHQWFAKFSAAIQAAGYVQSKADYSLFTCRNG
KSFTALLIYVDDILITGNDLKAVYTLKRFLHSHFRIKDLGDLKYFLGIEVSRSQKGIAISQWKYTLEILKDGGILGAKPV
NFPMEQNTKLSDAGDLLNDPSQYRRLVGRLIYLTITRPDIMYSVYVLSRFMHAPRKPHMEAALRVLRYLKGAPGQGLFFS
SQNDLSLRAFCDSDWAGCPMTxRSTTGYCVFLGSSLVSWRIKRxKTVSLSSAEAEYRVMAGTCCELSWLRSLLKDLRILH
PKPALLHCDNKAALHIAANPVFHERTRHIEMDCHFIRDKIxDGSIITKFVISADQLADVFTKPLGKEIFSTMIRKLGVLD
IHSPT
>Zorro3_pol#LINE/Zorro L1-1_CA 2007-5453 in RepBase. gi|14286189|gb|AAF73434.2|AF254443_1 reverse transcriptase [Candida albicans]
MKRNESYINSLTIGSKNIGSHQSTDFKKLLDIFLKLIGEHSMIDIWFIQEIRFVSQEQFNYINKILKQHNAQLRMHHFED
LTGFLIHSPHAKLKFKIRDNDNHHTTHFEGRISILDITLITNEDITLINNYLHSGNMDAQMTLLKAFIKYIANLKKHTNH
NIIYGGDYNHIMSLDDVQLPSDQTRYIISKKESEIIQLMSNFYKKWKLQDAFQIRNNLQPTNFHSNKSVKKRLDRIYIDS
RIRRKLRNCRILEEFKQISTHKIIAMSFQIQKEPILKVGNPRYSIPQWMSQDENIIKDLNNNEQSSLTPFSNWNGIINRI
KEKVIFYEKYQRYIRAYIPHAGNFPDEKMLKFRFRPSFNFSIITEMQTESGNTVQDTEIMINLATKFYQDLFLVEDRHLE
SFTFVEQFDKKIDDTDKVLLEKAFIEENVYDHLLMINKKTAVGTDGISYQNLIELWPSLGESLIRAGNNILKYGTLPQQM
SEVIITLIPKKSKTPIIENFRPISVISCAVRLLSSVIEKQLNPVLAKVIEKTQTGFLKERSISNSIYLLDMVLTRYQTSK
TADAESAGFINLDFRKAFDSVHHDFILKVLQQVGFGPKATNFLMAITAKQKAKVSINNIEGPCFPLKRGVRQGNPISPLI
FILILETFLARLSKEIEGIGVVNEVSSVAYTAYADDVIIFFKNKNDQERIQQLLEDFGRESGLYLNNNKTEVCYFNDIPE
ISFLPYVSKKLQLEKLTYLGVPMKKADEEFDPWTSFVLNLNAQIRMTPISDLPYQLIMKLMNIFIFSKLYYRDLHSPIST
TAVSSIITTVQQRLPLYFKLQRLQTPNHLGGFGLMNPNHQVKGRRGKQIYLLYTQEDDLIIKFMRTKIQDILDNIAKDYY
TMPTEPDKLIVYPWYLFGMGVSCHSSLQFRYLKERVYENLTKSEISWFEAWFQLVHYTGPPVETPIIIMSIEDYANLIIQ
PQTESIKLMSPNFEEQSLSEQTFHHTSRKLCPQAPIIPEGWGKHFDTIKSLTISDWTEFWKNMNKVQKQSVGSLQDYHLF
ILGYYSHYPFYPNYKKSEIHFCQLCNTGTDSIVHHIFECGETMELWSRHFNSQRTPQFIIGNKHLHKRDLYALNEYIKEV
VQKVKRRRGSPILNQGERENVDAGTNVLV
>I-5_AO_gag#LINE/Tad1? 81-1409  [Aspergillus oryzae]
MSGRAETRTPDPPDRDEQENSPPRLVRPKRTTRPPAHYAQEQEIETEQRNTRSQRKKKNQGKPVAQDKAATSDDSSTERE
DSDTSKLVKEIVKLRREIRRRDELYKEELQRVKEEFGAALTEFRHELLANRPPTPQAHPESCAQSGHEEILREIQSLRVA
VNPSGSPSYADVARTPPTSQPSNIRTLSSWNTTPTTFTDTLYCTIDTSKMADTESERPSAGPIRTAVETEIRTMENYTNW
RCRAVTVDPKNTNRIRIACRDEAEHQLVKKVAETKVGAGARVLRDELYPIKVDSVNRTAVLDENGDIRVGAAAAFGEENE
TTVAKIAWLSRKENAKAYGSMVVYLTKGSDARRLLADGFFHAGGESGVTSTFEHRPRPIQCYNCQEIGHKAFQCKSTQKC
ARCAAEGHHHSCCNQSVPKCIPCGGPHESYSKNCRKLYPSHHE
>Bhikhari-4_DR#LTR 2443-4044 [Danio rerio]
MSPTANPTARGEDVETWLQNITDGLITKAIELLLLLVIFMILKRLLTQDSSQNHNHPELTKFTCLLSDAFTAQLKLSDQH
LTHLQKELTCAQSRIDKLEAKGQDDFKRQTTEFLKEQLEQLQTALAVAERDQHELKSSQQDLIQRLQSAEQQVEEAKTSI
QHKDAKINALXDQLSTYSSANDDLTQQLDDISDELYRLRELIQVYQQKPEPRWAEPSSASPPLSKADSLISINSGRSERL
KTKSSPALTTNNFPSDASRKSLHTAVKPAQEETLRDLDKLAKRITQFNPNSTESRNIQAYLQDIDFYLEARPHVTDRDRF
YLLRSTSSPEVQSFLDRQRAHIKSNYQLLREALIEEFKSSESEHGVFTALETKQGRHKTPQAFYHRFRQAYFAAHDNPDL
EEDVNFKTLFLRNLHPGLSRHLGIIACPRTMSIRQLRDLTHRAYLKQKMSPRRDVKSSVAPITQGPTRAQKDTLCNDDTT
DYRAHSDRDSHDDDSYYTTWLEKSRDQPRSTRHSRHPKLFPRGNRNNSTPTVC
>Caulimovirus-1_BD_env?#LTR/Caulimovirus 5962-6828 [Brachypodium distachyon]
MKRGLLPNGVEVFTFGNENTLKIFPPNTFKFKPKGHIALDEIQECILDNFWFQYNNKREEKGYMLSILNSLAEYFNMMNK
KLPISANIAVQEYKPLYVLFDGIRPGIYMTFEEIIKEKLDARKRKEDITWKKYVDVNEALSRARGMIGENYYIEPKAKEY
IQKIKGEEISSSSNTKNVKEETLILKKVKEEESPKYQTYKDCLIKGVDPLDSEYIDLKINEALEDASKIWKEELKEEIFK
ELRLELMQKFEEMKKEHDLKIELNLSKFDFNLSEDDHMDIAGHGQKPEF
>ERV3-1_CHo_gag#LTR 442-2034  [Choloepus hoffmanni]
MGNRGSWPAGEEEKGAPIESLGDIPPDSPLGRMLKYWTDSDRTKGKDKKKMIKYCCYIWTEESISPPDVFWPKYGTEEDW
LCANLVIYVNEKKPFSKEESDYATCWLKNKKTSLYPVKDKNPNSEAELVESKPWDPLLSLPPPYYSPPLPGQKLLESEDL
IKSTQVPGEPGGPSAPTAPPDMTHQWLRKELAQCKKDIQNFPFPKTLEGKRVREHHPVESLYPLREVPMGPKEVGYVDAP
LTSAEVRNFKKEMKSLIEDPMGLAEQIDQFLGSSLYTWSELMSILNILFTKEERGMVRGAAMKEWERQHPPGQGVMAAEQ
KFPSTDPDWDNNDKEDRAQMKDLRDLIIEGIKLAVPKSQNLDKAFEVNQEKDESPSAYLQRLRDQVRKYSGMDPDDPVAQ
GMLKVSYVKGSWPDIRKKIQKIDGWMNKPLEELLREAQKVFVRREDEKQKQQAKVMMTTVDHLVKKRLEAGNGGSRQRRD
KGAGRADLNKGARRMQNSAGCYHCGKPGHFKRECPDLQKEGRVIPLMNFED
>Tad1-11_BG_pol#LINE/Tad1 1761-5417  [Blumeria graminis]
MMTRGRARREQESAGLCVLQVNVGKRGPAHDTALELAYQAGADIVLIQEPWIFSNFTRKATKTHPSFSTFTPTLNWTDRP
RVMTYTRKGVGLSPFQPAIHSRDLLQVCIRRKNKRAVNIFNLYNAPIGSVEAGAGLTNLFSLNQNPDILAGDFNTRHSLW
DPAARNDACGESLLEWAAEKGLLLLNNYGEPTHDGGSVLDLCFVKECSKASCKVRHDLDVGSDHRTIFFRITDRGPEVPN
PGRLRYAAADWSAFNNILRDRLRTPLISDVNDEATFLAEAISGALRAACPRSRKHGSGNRWWNEACAEAHRNFCRIRRQG
LDAVKERREFAKTVKKAKRDYWRNKIDQVASLTEAYKITRWHKKQTASPMPPLVGPHGPIDTPEAKAQTFRQTLLNRFSL
QDDIPISTPSVARTDLPWPPITEEEIFRACCQVSSTTPGSDEITPNSLRQAWPIIGKRVSALFRQCEKLGIHPIAFKKST
VIILPKSGNRDLTLPKSYRPISLLSCLGKGFERLIARRLSFIALKYRVLAEDQCSAIPLRSASDLTTALACDIQEKWMEK
KVAGIVTVDVQGAFDGIQKGRLCYRLRNQGWPSNVVRWVASFMEQRESIISIEDTTSPPFQTHCGLPQGSPVSPILFLLA
MEEALRLSTGRFGYADDIAIFASASSLDECARKLQEKLDSTLAWGLTNGISFELPKTELQYFHRKRGSPLEPTLSIGGTT
ITPNDHTRWLGIFFDRALRFQYHTIQACRKSLAITSHMKRLSTTTRGISPLFLRQALQGAAFATLFYGAETWYSKQTSQK
IILQVQHRMNDAARAALPVYRTTPIAALLREAGWGPAQTWLNRIHSRLAVRIAAADPYHPLRRRWNTSRMRWIRQRISLE
LSEDTIPPPWSAPREEKLIEIGAVGRLSGSNSFKQWQAARPILDLFVFSDGALIEDRAGAGYVIYRGLTQEIGRGSLPLG
NSAEVYDAEIAGATEGLAAALLNPLAFYASNVTVCLDNQEAALRLLSDVPTASSSAKIFLFRKLAANWKRRSRGQNTTPG
EVAIRWCPGHAGILGNEAADALAKAACAAPALHSVFSIARARREVKAQYEASVALYWAENSPSRYKELGIGPNTKITAEL
ACLGRRTLGYLLAARSGHGDFADYHRRFQHENAILTCSCGEEKSPDHFFYCHLGQYQAQLHRAQNPSPSISWALASAEGV
HAFNSWVRVTNFFGKAQQV
>hAT5_SB_tp#DNA/hAT-Tip100 627-3076 via genewise with 34894392_Osa, 1 intron (1508:1587) [Sorghum bicolor]
MEKYFAKKDDSSKESRVEQKRPxIELDMNDIVADPGLRKPIDEFHHDIRDDARRAYLQMGPYRPNREYERTGGKTQTRGF
VKSWFxQFDWLEYSPxKDAAYCFYCYLFKPPxTSDFDNDAFTRxGFRNWKKGKDSLLEHAQSIDGYHSxARKRAIDFKNQ
RQSVxHVWTVTTAAEEEAYKARLTIMLGIARFLLLQALAFRGHDESKTSRNKGNFLEMLDWYRKKDPKAALVTGENAPGN
NQMSCPTVQKDLVRACAEETSELIKNEIGDRWFAVLVDEARDASIKEQMAVVVRFVNDKGSVIERFLGxQHVSDTTSSSL
KEALVSMLGRYGLSIAKIRGQGYDGASNMRGQFHGLQRLVLNENPFAFYIHCFAHQLQLVVVAVARCCASTDDFFNYVTS
VVNTVSASCKRKDQLLQKHHDNLVEQLDSGExSPGRGKNQETSLARPGDTRWGTHHKTLVRLMLMWxSVLEVLENVSEDG
TDGEKKTIASGLIEKMESFEFVFILHLMIRVLGMTQDLSQCLQRKNQNIVRAIGLIGSVMRNMNAMRENGWDDLFEEVKA
FAVKQKIDIPNMEDTIPVRGRSKCRGAKLVTYYHHFHHGIFIVVLDQIICELNNRFPERSTQxLRCVACLDPxNxFANFE
IEKLVELAKIYxDDFSDYECxKLRSxLxNFIDEVKNDEDFGTCTDLGSLAEKMVQSDRHTxFPLVYRLIELALxLPVATA
TVERAFSAMNIIKTxRRNKMNDDWMNNSMICYIERDLFASVEDxKILKRFQGLRNRKMNLPREXPRCVLF
>Tad1-13_BG_gag#LINE/Tad1 614-2233  [Blumeria graminis]
MDKIRSSPDPFSLNNMEMKALMGPDDIDNMSEISYSDQVVYPAKINSGPSNLPKGKEKCTEHYDTEYSKGHTFDADIDTQ
GFNFSPQCGAKRKTEFTKSFPIKKNSARGVSSLIDIIDGPDECISTARDLLVKAAHQAESRSQQTKILDLLNIFRQFIEK
DGNIQREASVLAAQLQKLEHTAQVLQNTARQQKKPTGIPEPCTTDKGQNIKNHQQTSSTPAGTGNRVSAPQVSQPVRTWA
SVAGPSNSQKETGNGWTVVQPKKNIAPKPRSTNRLILLQDATTRQTFSPLQIRDQINSAFRARGVQGPVVAIVSRTRNDN
IAITTIGAYTADFLLDQVDIWKNYAPHVLAMKDQPWFKVIIHGIPTEEFGEGEDLSSISEEISTFNNGLKVIGQPYWITP
AENRANQKAGSIVVAFETEAQAKQATSRKLIVAGRYLPTEKYLNFTPTTQCHRCQVFGHQESRCRWEAKCQFCAGSHGTK
QHACSQCKAVGTKCIHLVPKCGNCNGAHTADSNECPTKISIMERIAAREDEARKNHEECL
>Tad1-17_BG_pol#LINE/Tad1 2003-5695  [Blumeria graminis]
MSINVGRGGATHNIALSRAYELGVDVVLIQEPCWTKQTNETKSHPGYLCHTPYGGVDVRPRAVTYTRKNEKVMSAEQIFP
CNRLTGDYCWVLVNGITFLNVYKAPNNPTAVRTLVDWKPSARSIAAGDFNSVHAAWQPGATRPYGQGDEIERWAEDHNLS
CLIIGEPTHKAGNTLDLAWTNISGARAWVDREECMTSDHLPIRGIIPSATFIGNPAPPKIRVPKKNLPNFARAVAKWVHP
PLDLSTKEKVDEYAQEICFHLSEAIKATGTRARKESGKSAPWWTPMCKSAYAEYRAATTPTQRATCAKKLRATITAAKKK
YQTSQVEAMTSPSDIFKLMRSANHRQVRPPPPLNYNGSYITDPLERATILRDALLARHQQSDDLPPCNTPSDNRIPWEGE
ISDEEVRTCTIGCGKTAPGADGVTVELLEACWKTIGPCILQLFRACIRLGTHPSCFKLAEVVLLEKPNRDPTTIKGWRPI
ALLSCIGKGLERLLAKRMAHLAITCDVVGHQQFGALPKRSATDLVSCVVHDVEEARSQGWASTFVTLDVQGAFDAVLHNR
LVRRMQAQGWPDSILRWTSSFLTHRKVQVRFSGGVTTQRELVCGVPQGSPISPLLFLLYMAEPMKSGTPGLRFSYADDIG
ILGFGRTIAESAAAVQGETDHLLEWARNNAVDFDTEKSEVIQFPGRRREEAVGVHVNGTLIEPAENIRWLGVNLDPRLNF
KHHVTTWCGKAVKVAQHMRRFNSTFRGAAPGPLTKAVDMCVVSLATFGSDVWWPGSKRPTIRGLVTSSTSNLCSMIDRAN
LMGLRAALPVMRTTPNVVLHREGGIPPAKVILEGNRLRLSARLKTLDDRHPLRTRASVCPNVGTQKYKKTAKTSARPEIQ
MSRLQRAYRELPEAEAPESLMPVVYPRKSVSKPTEREDCVRWISDVPGTDICAYSDGSSEGHGRSAWGFVLRKDGKLIGK
GSGIMHGGEVLDAEIMGARNALEAALEFLENEKFRKGGGFRRIHVFLDSQQAVNALTTGSSSTSLEDVRKFRASSNRAEI
SVKWVPGHAGIQGNEEADSMARAALRELPSQDTQPGSSTLAHLRGLMNRRRQRLLDNWWEEACPPKYRQLNLQVRRRKPP
ELSLSRHLLRALIAARTGHGNFAAYHRRFNNPYAPMECSCGKETTPTHFIHCSRHAQQTRRLRKSMSHVDFVKKLLGPKC
HESFKIFAEETGCFDSQPAHSSTALSGDRIN
>Tad1-15_BG_pol#LINE/Tad1 2003-5918 via tfasty with Nimb-2_DR_pol, 1 frameshift. [Blumeria graminis]
MLDTLKFSQHNTARGREIQQSLFEVALKEESDFIFVQEPYMFHHQPSQSFRPINHSAFNLIPPVLNTNLRPRVLTYVKKS
SQLQVSPRYDLVTDPDLQILEVELSSESFYVVHIYNEKPTSHYSTKLTVERFLDLQLTLDKPMLFLGDFNLHHSCWNPLV
QNNSPLANELAQYLDNANAQLLNSPSIIEQYGGTFHRSNSKSTSIIDLTFAIGFKHLRWGNWKYGESTGSDHEVILFDTR
FMDTNQEGVLNDNRNTNPLPTRFNVKKANWELFKSHVLHQQELMQQTLEMAIDRQDVDLIASILQEVVQAAAQESIPLFK
VTPRSKPWWTKDLALLRHSFHKLRRQEKKDHCTDIMDKARAARNKYFQHIQHTKHQHWMNFLASAKDKMIFTAYNYSRPE
NYQSRIIPTLVYTPKHQSQPAKATTFEAKSEALAQTLFPSLQTSTLSAEAEEFIPSTSVNLTTRNEKERQWDWPELTIDE
MINAAPKKMTAPGHDCLDWTIIKAAITTIPDFFFKAYKCLFESGKHPQQWKQAVGIIIPKRNKMDYSAPKAYRPISLLPC
LSKLLERIYANRLSYIANTTDMLHPSQLGGRKQRSAIDAALLLQEFVEQNLASKRLVSTIFLDILGAFDRLQPAALIQTM
RSLQLPLGLISWVRSFLAGRTMQLLFNGQLSKVFPVTGTPQGSPISPMLFLLSIRFLLPAVHRKNFLQLSYMDDIAVSVS
STSINKNIRTLKEITEELLEGARKLSVNFEMEKSELIHFGRQYQRPNTSLALDGLATIEPKEVVRWLGIWFDRKLSFKTH
VEKRLQLAHGALSRIRNLASNTRGLHCHALRNLYLACVTSVLDYGSVLWHGKRGSGILTNRCQKLQNQALPLITGAFRGS
PVKALEVEASILPAKVRHYKQAIYYGLRILRLQRNHPIQEHLFSPMEDELASMKRIDLGLLTYIDKPVTQLIRIGSTLKP
LASLKNLEQLNALWVPPWHQSNINTTISNHSKATTKITHIQQIKDIHLNDVIVYTDASLSKTAGSSIGFVIYLPVTREMK
CFSYNLGDSMGITDAETYCILKAAKYVKKYFANKIIHIFTDSQASILRIQHNSNQFSHQIRMICQGCTVHLQWCPAHVGI
EGNELADKLAAGGQSQGVMRRDHHTSHSFIKHQAREWILEAWKKDWDMELWHEEEGRKAKGLGKYYRLQAQTNQPNFSFK
LFGFQGHSRETESGFFQARLGVGNTRVYLHMIGKVQDNICNFCGKDRQSVQHLLLHCPKFKDQRNKCFQGIEPRSLPTLF
RTRRGKEALLKYLDTSKCMAAHKGS
>CAULIV-1B_Mad_pol#LTR/Caulimovirus 1979-5749 [Malus x domestica]
MLXELKQEKTVXVLXHPDESQXETTSTSSESETDTDSIRKVEQAFQNLELKRITNKRVNPTSLTKNWYPRPTPPDIQFEE
RNIQNQFSVSSDKLYEWNIDGLSEQELLNKLQHISMVANSYITNHNLSQTQVVDLLVTGFTGMLHSWWEKHLTEQSRNEI
KNAVKRDEEGIPIFDEXXGQGVPDAVNTLLFTIIEHFIGTPSNVTSRIHDQLSNLRCPTLSDFRWYKDVFMSRVMLREDS
NQPFWKEKFXNGLPNLFAHKIRNVLVNEEGIIPYHTLTYGNIINIIQKEGLKMCIDMKISKQVNKDKSIAKYELGTFCEQ
YGLPPIAPSNKKKRSDAYNRYPXRYSSRRHPKYKNKNFETNEFYEKPKTNKWKRKPSGKFHPKEQKGKCYKCGKFGHYAN
KCRVKKTINQLKISEEEKLQLIQVLELRDTDHSQSEDDLELSSSDNNSSSNSSSPDIKVGCTDACCNNKISVLNKQEEQE
DLLIELXSKVDDPELKSFYLKKLKKLVSPEEPGTSQTQSTPKISLSTTLERFNKSKKEITVKDLQREVNKIKDEIRFLKS
ENLEVRTXLSRVQTQSLVNPHEEEXXSSSSGPDSGSQSEKSTENLVLGLLDKIRIQKWYSKIKIIIEDFHLETIALIDSG
ADLNCIQEGLXPTKYFHKSTEILSAANQSPMQLKYEIXKAHVCQNNICFKTPFVLIKNIXDPVILGLPFXALIYPFKVHH
NRITTRVLGQKVTFEFCLETDLKKLRHLQKNNISKTISIITNKSQHINFLKEEINHKXIEEQLTNKSLLETIDNFQKKLI
NEVCSDIPNAFWHXKQHIVKLPYIKEFNEXKIXTKARPIQMSQEVMEFCKTEIQELLNKGIIRKSKSPWSCPAFYVQKNA
ELERGTPRLVINYKPLNEVLEWIRYPIPNKRDLIKRLSQAVIFSKFDMKSGFWQIQIHEXDKYKTAFVTPFXHYEWNVMP
FGLKNAPSEFQNIMNEIFNQYSHFSIVYIDDXLIYSKSIDEHWKHLHXFARIIKSNGLVVSXSKIKLFQTNVRFLGYNIH
QSTIQXIDRVIQFXDKFPDQITDKTQLQRFLGSLNYVSEFYPHLXQQCKXLFDRLKDNPPXWSTIHTSIVKQIKXHVKTL
PCLGIPTPNSFKIVETDASDIGYGGILKQXTSSGSPEQIVRFHSGVWNXAQTNYSTIKKEILSIVLCISKFQDDLLNQKF
LVRVDCKSAKHVLQKDVQNIAXKQIFARWQAILSIFYFXIEYIKGSXNCIXDFLTRE
>ATCopia33#LTR/Copia 121-4088 Wised via estwise with ATCopia49 protein [Arabidopsis]
MFAHLRVLGLKTALVEQPPHKPLTEEEEGDPAKKKKWIEEEEARIERDEKAMDIIFINVADKVLRSRKHSKSAAEAWGTL
ERLYLVKILPNRVYLQLKVYNYMMQESKTLEENFDEFLKMILDLNNLQIQVPNEVQAILILSALPEKYDMLKKTSKYGRE
GIRLDDVISVAKSKELELRDSLGDSRPVGEGLYVXGRPHAKGNDQMFGKEGKKICWICGKEGHFKRQCYKWIERNKANSQ
QGESALVKDDAQDLIGLVASEVNLTENADQDEWIMDTXCSFHMTPRRDVLIEFQEIGTGMVRMANNLFTEVNGIGKVRFV
NSDGTTFMLHDVRYMPGMSRNLISMGTLDSKGCEFEGKNGVLKVMKGDITYMKGTRRESXYILQAGAKKSECLALEEKPA
EEDLTKLWHNRLRHVGQKGMDGLAEKGCFGKDKVSSIKFCEDCVFGKTHKVSFSSAQHVTKEKLDYVHSNLWGSPNVPLS
LGRCQYFISFTDDWSRKVWIYFLRTKDEAFDMFVQWKKMVETQSERKVKKLRTDNGLEFCNNRFDTFCKKEGMVRHRTCA
YTPQQNGIVERLNRTIMNKVRSMLSESGLGQQFWVEAASTLVYLINRTPSSAIDFHIPEEMWTSTVPDLSGLRRFRCLAY
IHSNDGKLNLRAKKRIFTGYPEGVKGFRVWLLEDRKCTISRNVVFKEDVLYKDIMAQKQSCMISNPLPMLSDKATCDIAG
NNRSEEDXLKXGALKQDTVINSGQSSVEMSTRVENQMSGSYQIAKHRPRRQIMXTNQTRRLIHXEAELDEIAGYAYFVTE
DGGKSEPSSFQEALRDANSDKWFTAADEEIESLMKNKTWSLVDRDEKQKPIGCKWVFKRKPGIVGVEGPRFKARVVAKGY
SQKEGVDYQEIFSPVVKHVSIRFLLSIIAHLDMELQQMDVKTANLHGYLXETIYMDQPEGYVDEKYPMKVCLLQRSLYGL
KQSPRQWNNRFNEFVXSHGYERSQYDSCVYSKRLQSGDYVYMLLYVDDILIASKDKNHIDELKTLLNSEFEMKDLGEAKK
ILGMEISRDRQKGTLTVSQDGYLLKVLGTYGMDQSKPIGTPMGIHFKLRAATDEELRIQSESMRGVPYQSAVGSLMYAMI
GTRPDLAYPVGLVCRYMSKPLKQHWQAVKWILRYISGSIKKKLCYKNKGDFVIEGFCDSDYXHDRRRSTSGIVFTXGGNV
ISWKSSLQKDVALSSTEAEYMALTEAAKETVWLLGLMNELGFKQDSVNIHCDSKSAIALARNTVFHERTKHIDTKYHFIR
DLVSDGVINLVKIATECNPADIFTKTVPVGKLQEALERLRITE
>ATCopia27#LTR/Copia 844-5502 [Arabidopsis] ATCopia28 similar, with large internal deletion
MSKLTNLMYAALLASGDNYLQWALDTKIELKSKGLAECIVEGNEKTERSKYQAISIIRHHIAESLKNQYLTVEDPLELWL
ELKNRYDHQRTIQLPKAQHDWLNLRIQDYKSVEEYNSELFKIVSILRLCGEKVTENDMLEKTFSTFHANNVLLQQQYRAK
GFTTYTSLASCLLLAEKNNELLLMNSALRPPGSTAVPEANRAEMAKAPNEPQATKESNYVHRGNPHGRGRGRGRGGRGRG
NFYGQGNHYGGRGRGNYGRGRGRGRGVNKPRGKAKSVCYRCGMDDHWAKTCRTSKHLIEAYQEMIKQKGPEANLVHLDGE
GDFDHENDDLMDYETSDILGKYTSSFKFALFALLCSLISIARCLGFIYFNGIALLHYCLLYRLRYSSCPHLEMAEDKDIL
IVDSGSSHTILRDKRYFINLTLRNANISTIAGIASLIEGYGQAHVLLPNGTHLEISDALYSPSSKRSLLSFKDIRLNGFH
VETKGEGNREFLHVTEIAQGHKRVLETIPALSTGLYHTKINMIEANLAMNKEFIEEFTLWHDRLGHPGHNMMRKLMISSK
GHTLKEKRVIPKKLTCAACAQGKLIIRPLPAKVNKETINFLERIQGDICGPIHPPCGTFRYFMVLIDASTRWSHVCLLSS
RNQAFARLLTQIIRLRAHFPDFPLKTIRLDNAGEFTSQAFNGYCMSMGVSVEHPVAHVHTQNGLAESFIKRIQLIARPLL
MRSRLPVAAWGHAVLHASELIRIRPSSEHKYSPSQLLTGHEPDISHLRIFGCAVYVPIAPPQRTKMGPQRRMGIYVGFDS
PTIIKYLEPTTGDLFKARYADCHFSESEFPALGGETNKLGKEIKEIAWNQTSLNWQDPRTLMCDSEVHKIIHLQKLANEL
PDSFADPKRVVKSYIPACNAPVRIDIQKGINVIATKSNPQKKRGRPVGSKDKNPRKTKKGAMGTEVKETIDMAAASPKEP
PNEIWDAEAHGPEGIDNDEISINYIMSGIKWNRKEVDVDEKFAYEVAYEINEDHEPTSIIECTQRSDWLKWKEAIDVELG
SLKRRDVFGPILRTPSNIKPVGHKWVFVRKRNEKNEIVRHKARLVAQGFSQRPGVDYEETYSPVVDATTFRYLISLAIRE
NLDLRLMDVVTAYLYGPLDNEIYMRLPEGIELKGKDKNGSRDQYCIRLNRSLYGLKQSGRMWYNRLSEYLVKEGYKNDPI
SPCIFIKKFASKGFVIIAVYVDDLNILGTSGEIAQTVEYLKKEFEMKDLGKTKFCLGLQLEYVDKGILVHQRAYTETVLK
RFNMDKAHPLTSPMQVRSLGLDSDPFGPKKDDEEILGPEVSYLSAIGALMYLSSHTRPDICFAVNLLSRFSSCPTKRHWE
GIKHLLRYLQGTIDFGLYYTNHNKEGLVGFADAGYLSDPHNGKSQTGYVFTHGGTAISWRSMKQTIAATSSNQAEILAMH
EASRECVWLRSMTQHIRADCGMVEAKEPTIIYEDNAACIAQLKEGYIKGDRTKHILPKFFYTHDLQKDGEVKVVQVRSSD
NSADLFTKALPATTLRKLAHQIGMRRLKDLQG
>ATCopia46#LTR/Copia 23-4258 Wised via estwise with ATCopia7 protein + N term extended with ORF [Arabidopsis]
MADNSDSSSALCFSHYVTLKLSTANYLLWKIQFETWLNNQRLLGFVTGANPCPNATRSIRNGDQVTEATNPDFLTWVQND
QKIMGWLLGSLSEDALRSVYGLHTSREVWFSLAKKYNRVSASRKSDLQRRLNPVSKNEKSMLEYLNCVKQICDQLDSIGC
PVPENEKIFGVLNGLGQEYMLVSTMIKGSMDTYPMSFEDVVFKLINFDDKLQKYAEVPNVSPHLAYATESNYSXGQSGGN
RGRNNYTTKGRGFPQQISSGSPSDSGTRPTCQICNKYGHSAYKCWKRFDHAFQSEDFSKAFAAMRVSDQKSNPWVTDSGA
TSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHIGSAVLTSNQGNLPLRDVLVCPNITKSLLSVSKLTSDYPCVIEFD
SDGVIVKDKLTKQLLTKGTRHNDLYLLENPKFMACYSSRQQATSDEVWHMRLGHPNQDVLQQLLRNKAIVISKTSHSLCD
ACQMGKICKLPFASSDFVSSRLLERVHCDLWGPAPVVSSQGFRYYVIFIDNYSRFTWFYPLRLKSDFFSVFLTFQKMVEN
QCQQKIASFQCDGGGEFISNQFVSHLAECGIRQLISCPYTPQQNGIAERKHRHITELGSSMMFQGKVPQFLWVEAFYTSN
FLCNLLPSSVLKDQKSPYEVLMGKAPVYTSLRVFGCACYPNLRPYASNKFDPKSLLCVFTGYNEKYKGYKCFHPPTGKIY
INRHVLFDESKFLFSDIYSDKVSGTNSTLVSAWQSNFLPKSIPATPEVLDISNTAASFSDEQGEFSGAVGGGGCGCTADL
DSVPIGNSLPSSPVTQQNSPQPETPISSAGSGNDAEDSELSENSENSESSVFSEATTETEAADNTNDQSHPMITRSKSGI
FKPNPKYAMFTVKSNYPVPKTVKTALKDPGWTDAMGEEYDSFEETHTWDLVPPDSFITPLGCRWVFKTKLKADGTLDRLK
ARLVAKGYEQEEGVDYMETYSPVVRTATVRTILHVATINKWEIKQLDVKNAFLHGDLKETVYMYQPPGFENQDRPDYVCK
LNKAIYGLKQAPRAWFDKFSTFLLEFGFICTYSDPSLFVFLKGRDLMFLLLYMDDMLLTGNNSELLDTLLVSLNKEXRMK
DMGMLHYFLGIQAHFHXEGLFLHQEKYAMDLLVAAGMADCAPMPTPLPLQLDKVPGQQESFADPTYFRSLAGKLQYLTLT
RPDIQFAVNLVCQKMHSPTVADFNLLKRVLRYLKGKVQMGLNLHNNTDITLRAYSDSDWANCKETRRSVGGFCTFLGTNI
ISWSAKRHPTVSRSSTEAEYRTLSIAATEVKWISSLLREIGIYQPAPPELYCDNLSAVYLTANPAMHNRSKAFDVDFHYV
RERVALGALVVKHVPASHQLADIFTKSLPQRPFFDLRYKLGVVLPPTPSLRG
>ATCopia64#LTR/Copia 120-4142 Wised via estwise with ATCopia78 protein + C term extended with ORFs [Arabidopsis]
MLNNANYTVWTMRMEATLRVHKVWETIDPGSDDMEKNDMARALLFQSVPESTILQVGKHKTSKAMWEAIKTRNLGAERVK
EAKLQTLMAEFDRLNMKDNETIDEFVGRISEISTKSESLGEEIEESKIVKKFLKSLPRKKYIHIIAALEQILDLNTTGFE
DIVGRMKTYEDRVCDEDDSPEEQGKLMYANSESSYDTRGGRGRGRGRSSGRGRGGYGYQQRDKSKVICYRCDKTGHYASE
CLDRLLKLIKAQEQQQNNEDDDEIESLMMHEVVYLNERSVKPKEFEACSDNSWYLDNGASNHMTGNLQWFSKLNEMITGK
VRFGDDSRIDIKGKGSIVLITKGGIRKTLTDVYFIPDLKSNIISLGQATEAGCDVRMKDDQLTLHDREGCLLLRATRSRN
RLYKVDLNVENVKCLQLEAASESTKWHARLGHXFDTIQAMVRKELVIGISNIPKEKETCGSCLLGKQARQPFPKATTYRA
SQVLELVHGDLCGPITQSTTAKKRYILVLIDDHTRYMWSMLLKEKSEAFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVS
QEFQDFCAKEGINRHLTAPYTPQQNGVVERRNRTLLGMTRSILKHMKMPNYLWGEAVRHSTYIINRVGTRSLQNQTPYEV
FKQRKPNVEHLRVFGCIGYAKIEGPHLRKLDDRSKMLVYLGTEPGSKAYRLLDPTNRKIIVSRDVYFDENMSXKWNNSDS
ETRDISGTFSLTLGEFGNNGIQESDDIETEKNGEESENSHEEEGENEHNEQEQIDAEETQPSHATPLPTLRRSTRQVGKP
NYLDDYVLMAEIEGEQVLLAINDEPWDFKEANKLKEWRDACKEEILSIEKNKTWSLIDLPVRRKVIGLKWVFKIKRNSDG
SINKYKARLVAKGYVQRHGIDYDEVFAHVARIETIRVIIALAASNGWEVHHLDVKTAFLHGELREDVYVTQPEGFTNKDN
EGKVYKLHKALYGLKQAPRAWNTKLNKILQELNFVKCSKEPSVYRRQEEKKLLIVAIYVDDLLVTGSSLDLILCFKKDMA
GKFEMSDLGQLTYYLGIEVLHRKNGIILRQERYAMKIIEEAGMSNCNPVLIPMAAGLELCKAQEEKCITERDYRRMIGCL
RYIVHTRPDLSYCVGVLSRYLQQPRESHGNALKQVLRYLKGTMSHGLYLKRGFKSGLVGYSDSSHSADLDDGKSTAGHIF
YLHQCPITWCSQKQQVVALSSCEAEFMAATEAAKQAIWLQDLFAEVCGTTSEKVMIRVDNKSAIALTKNLVFHGRSKHIH
RRYHFIRECVENNLVEVDHVPGVEQRADILTKPLGRIKFREMRELVGVQCVLEDDFKLKGE
>ATCopia61#LTR/Copia 187-4631 Wised via estwise with ATCopia62 protein [Arabidopsis]
RRSSRVASSARRQVNRDDDDESSPEIPPIVPPIVSPIVPPVVPPVVPVYTSSIDNPDSIHSPYHLSNSDNPGISIISEVL
DGTNYDDWHIAMKTSLDAKNKIAFIDGSISRPSXTNAMFRIWSRCNSLVKSWILNSVSKQIYKSILRFSDASEIWKDLAT
RFHITNLPRSYQLSQQIWSLQQGSMDLATYYTTLKTLWNELDGANCVTVCKNCDCCKAMETKSEHARVIKFLAGLNESYA
VIRSQIIMKKHIPELAGIYNLLDQDLSQRNITPVQNAVAFNFSAMEPTQASVNATYNHSKLQQKVICSHCGYTGHTVDKC
YKIHGYPIGFKHKNKNAQQDKQIVPPKPVVAQLAFTNATSSDLLTGMAKTLTKDQIQGVLAYFXENSMMXCDMASPSGAT
ITALPGIAFSSSTLRFIGALKATGNVLSSSSWVIDSGATHHVCHDITLFQTLSETMNDSVTLPTGYGVKITGIGSVELSD
HMILKNVLYFPDFRLNLLSVSQLTKDLGYRVSFDESCCMIQDHIKGLMIGKGEQISNLYVLDMQFLVKNSTQPLVFSAIL
VDSSLWHSRLGHSSNVKTDLVTDVLGFKQRNKDDFHCVICPLAKQKRLSFPSKNNICESAFDLLHIDIWGPFSVSTSXGY
KYFLTIVDDHTRVTWLYLLKAKSDVLXIFPDFLKMVETQYKTVVKAVRSDNAPELKFVNLFKSKGIIAYHSCPETPEQNS
VVERKHQHILNVARSLMFQSRVPEEYWGDCVLTAVFLINRLPTPLLKNKSPYEVLTSKKPXTGLRVFGCLCYSSTSSKNR
HKFQPRAKACIFLGYPSGYKGYKLLDLETKSIHISRNVVFHETRFPFSSGDSAGPFSDIFGSINESLIENDTEIVDSNIP
VVVSEAPILSEPLTVVNDSVNDSHEDSAPKSVPTTSTSRSKRESKQPAHLKDYFCNLSRKGVQYPLSDYMSYDQLSTPYR
AYICSVTKFSEPSSFFQAKKSDDWIKAMNAELQALEGTATWEICSLPSNKKAIGCKWVYKVKLNVDGTLERYKARLVAKG
YTQQEGVDFEDTFSPVAKMTTVKTLLAVAAAKKWSLHQLDISNAFLNRDLYEEIYMNLAPGYTPKEGEEIPPNAVCKLKK
SLYGLKQDSRQWFLKFRSTLLSLGFQQSHADHTLFVXNNNGRYIAVLVYVDDIVIASNNDEEVANLKDDLKKAFKLRDLG
SLQYFFGLEVARSASGISVCQRKYALDILEETGMLACKPSAIPMEPSIKLVGDGAEPVINDSASYRRLVGKLMYLTITRP
EITYAMNKLCQFTSAPKGSHMKAILKVLQYIKGTIGNGLFYSATSDFVLKGFTDADWASCRDSRRSTSGYCMFLGESMIS
WKSKKQQMASHSSAESEYRAMQYAVREIVXLVHLLSDLQVPQHAPVAFFCDSTTAIHIANNSVFHERTKHVELDCHIVRD
RIMSGPIKILHVTTXLQLADVFTKSLYPTQFKSIVGKMSLK
>Arthur2_Api_tp#DNA/hAT-Tip100 193587442 ref|XP_001949914.1| PREDICTED: similar to zinc finger, MYM domain containing 1, partial [Acyrthosiphon pisum]
MEYLKGHISAFADDTVLFFEGDNWNEVETKANIGLSIVNKWLANNSLMLNKKANGSAESQSDITPHDNLLDISTNCGIEE
KLTEANGSAEIQSDIASRDNLLDISANFEIEEKLTEDNMVKVNIEETTTELNSVDWNLYKNPFFWPKNMPKSFIDEGSVY
CFVCKLYGSNRESPFISGGFDKWKKSEWIGEHENSLQHRNATNKWLLRSNTNNSVNKELCPQISAETNYWFEVLKRLVSV
ITFLSSRGLAFRGKEEKFNSQHNGNYLGLLELISEYDPFLKAHIEQYGNQGKGNPSYLSKTVCNELMTIMKNSLSTFIIN
EIKECKYFSIIMDSTPDLTKFDQMAIILRYCTLTGVEERLLGLFPIKDHQGQSMYKVLDDFLEKSELDIMNIRGQSYDNA
SNMSGQFKGLQAYVKNKNPLAVFIPCTAHSLNLVGVNSVNCCTEAVNFFDFVQKLYNFFSGSTHRWNVLINILKKEEKNS
VKGNSSRFLTLKSLSDTRWSCHAEACKAIVVNYEQILTALKSMYDGEENNVTTLDAKSLWKKMVKRETAYMSLVWNDIME
RSNKTSTILQHSNCDTMKAINLLKSLKCYVLSLRDSNSIYEEKIPNLSPEITIYYSDEKQRKQIKKFPDDITLPNELVQF
KEYWKLCQPSFDPADISKLFSWFGNQSLEEVFPCLFTTLKIYLTIPVANCXXXXXXXXXXXXXXXXXGLYAPEVARDQKR
RKAPNSGVFVVETMFDISPRHKRKLRSDALPTLKVRNTSSCIDYVEKNTTETEATNLVDIGLEQIHQKPHNDELVNLEDS
EKHYTTINGSNISKSSKSTIDAQHPSIEDS
>ATCopia3#LTR/Copia 88-4386 [Arabidopsis thaliana]
MASETVITSDSTSLLNVNMTNVTKLTSSNFLMWRRQVQALLNGYDLTGYIDGSIVVPPATITANGAVTVNPAFKHWQRQD
QLIYSALLGAISISVQPILSRTTTSAEIWTKLMDTYAKPSWSHIQQLRQQIKQWKKDTKSIDEFFQGLVMRFDQLALLGK
PMESEEQMEVIVEGLSDDYKQVIDQIQGREVPPSLTEIHEKLLNHEVKLQAAASSLPISANAASYRPPANNKHNNSNNYR
GQNRNNNNRGANSYQQPRNDQPSSRGYQGKCQICGVFGHSARRCSQLQMSGAYSTPSPSQYPNATVPWQPRANMAAMSYN
PWLLDSGATHHLTTDLNNLALHQPYNGGEEVTIADGSTLPITHTGSSTLSTQSRSLALNNILYVPNLHKNLISVYKLCNA
NKVSVEFFPAHFQVKDLSTGARLLQGRTKDELYEWPVPSNTPISLFASPTPKTTLPSWHSRLGHPSPPVLKSLVSQFSLP
VSNSSQKHFPCSHCLINKSHKLPFYSNTIISYTPLEYVYSDVWTSPVTSVDNFKYYLILVDHYTRYTWLYPLKQKSQVRE
TFVAFKALVENRFQTKIRTLYSDNGGEFIALRQFLLTHGISHLTSLPHTPEHNGIAERKHRHILETGLTLLTQASIPTSY
WTYAFGTAVYLINRLPSSVLNNESPYSKLFKTSPNYLKLRVFGCSCFPWLRPYTNHKLERRSQPCVFLGYSLTQSAYLCL
DRSSGRVYTSRHVQFVEDQFPFSISDTHSVSNSSPEEASPSCHQPPSRIPIQSSSPPLVQAPSSLPPLSSDSHRRPNAET
SSSSSSTNNDVVVSKDNTQVDNRNNFIGPTSSSSAQSQNNSNPSSSIQTQNEPNPSPSPTPQNSSPESSPSSSTSATSTV
PNPPPPPPTNNHPMRTRAKNHITKPKTKLSLLAKTVQTRPQIPNTVNQALRDEKWRNAMGEEINAQIRNNTFELVPPKPN
QNVISTKWIFTLKYLPNGTLDRYKARLVARGFRQQYGLHYSETFSPVVKSLTIRLVLQLAVSRSWTIKQLDVNNAFLQGT
LTDEVYVTQPPGFIDPDRPHHVCRLKKALYGLKQAPRAWYQELRNFVCSLGFTNSLADTSVFVYINDIQIVYCLVYVDDI
IVTGSSDALVMAFITALSRRFSLKDPTDLVYFLGIEATRTSQGLHLMQHKYVYDLLSRMKMLDAKPVSTPMATHPKLSLY
SGIALDEPGEYRTVIGSLQYLAFTRPDIAYAVNRLSQFMHRPTDIHWQAAKRVLRYLAGTATHGILLRSNSPLSLHAFSD
ADWAGDNDDFVSTNAYIVYLGSTPIAWSSKKQKGVARSSTEAEYRAVANTTSEIRWVCSLLTELGITLPKMPVIYCDNVG
ATYLSANPVFHSRMKHLALDYHFIRDNVSAGALRVSHISTHDQLADALTKPLPRQHFLQFSSKIGVSKLPPS
>ATCopia15#LTR/Copia 101-4468 Wised via estwise with ATCopia72 protein [Arabidopsis thaliana]
MVAVARVTRKSTRSKASISSVPWKSSRSTGLTVSPPISPPAVDLLSAGASRAVVTSDSMDPTQSPFFMHSGDHPGLNLVS
IRLDETNYDDWSAALRISLDAKNKIGFVDGSLPRPLESDGNFRLWSRCNSMVKSWLLNSVSPQIYRSILRMNDATDIWRD
IYGRFHMTNLPRTYNLTQEIQDFRQGSLSLSEYYTQLRILWDLLDSTEEPDDPCTCGKVLRLQQKAERAKTVKFLAGLNE
SYSIVRRQIIAKKALPSLVEVYNILDQDYSQKGFSTNVSPPAAFQVSKISSTALTPKICYVQNGPNKGRPICSFCNKVGH
IAEKCYKKHGYPPGFKGKLPEKGTKPQPVAAQVSLLPPMVPTQATLDGLLGNLSNDQLQNFIALFSSQLKSQPTASSSDA
GISRSPIDYTGISFSNSTYYFVGILNVSQHTLSTETWVIDSGATHHVCHDKSLFVSLDHSVVSYVNLPTGSRVKISGVGS
VQINENILLRNVLFLPEFRLNLISISSLTSDIGSRVIFDPSCCEIQDLTKDLRIGRGRRIGNLYVLDTTPPLDSVSVNAV
VDVSLWHMRMGHPAYSRLDAISDILRTTKHKNKGSAYCHICHLAKQKKLSFQSSNNICNSTFELLHIDLWGPISVETIDG
FKYFLTIVDDHSRATWVYLLKTKSEVLSVFPAFVTRVENQYNVKVKAVRSDNAQELKFTEFYKAKGIVSYHSCPETPEQN
SVVERKHQHILNVARALMFQSKVALPYWGDCILTAVFLINRTPSQLLSNKTPFEVLTGKKPDYEQIRTFGCLCYGSTSPT
QRHKFQPRARACIFLGXPSSYKGYKIMDLESNKVFISRNVTFHETVFPMASPHSADSPSLVTPMDSLPXGNPNSISPSPS
QISPSTQISSHRARKLPAHLNDYHCYSLNNEVTHPISSFISYSKISPSHLLYINNITKIPIPQSYSEAKDSKEWCDAIDT
KIGATEEKDTWEVTSLPKGKKAVGCKWIFTLKFHADGSLERHKARLVAKGYTQKEGLDYTDTFSPVAKMATIKMLLKISA
SKKWFLTQLDVSNAFLNGDLEEDIYMRLPEGYADNKGDQLPKNVVLRLKKTIYGLKQASRQWFLKFSNCLLDLGFIKGHG
DHTLFVRCFGGEFLAVLVYVDDIVIASTIEGVAAQLTNALKESFKLRDLGPLKYFLGLEIARTAAGISICQRKYALELLA
FTGMLDCKPSTIPMVPNLKLSKADGELLEDREFYRSLVGKLMYLTITRPDITFAVNKLCQYSAAPRTSHLTTVYKVLQYI
KGTVGQGLFYSSDPDLTLKGFADSDWGTCPDTRRSTTGLTMFLGSSLITWRSKKQPTVSRSSAEAEYRALALASCEMVWL
ASLLLDLKIITGSVPIVFSDSTAAIYIATNPVFHERTKHIEIDCHLVRERLDKGLIRMLHVRTEDQVADILTKPLFPHQF
SYLMSKMSLHNIFASS
>Arthur1_Cis_tp#DNA/hAT-Tip100 489-2960 [Ciona savignyi]
MQRRYPSGAQKRAAALEKKKKESHLAEKIPKLTTFLKLSRSTTAGEDEPISPKLDIGNQTIHGSSMHVLDEDVNACSEPK
SVMDDVISDDLNFWPQKISENLRNYWIQRGSSSCQHKNHGFKESVVQLEKESQRRYCSIALFQRVHARTGEQFDRTWLCY
SKTSGRVYCFVCKLMSSTVSKLTSGLNNWKHAHEILMNHENSKQHLDAMAALCARKSSSQIDSDLVKQYEGEVQYWQELL
RRLVSVVKFLCVRGLAFRGKNELIGSSNNGNYLGILELLSEYDTFLAEHISKHANKGRGHASYLSSTICEELIELMGQKV
LCVIIDEIKTAKYFSISVDSTPDIMHVDQLTVVIRYVLQSGPVERFLKFIPIYSHTGSEIARIILQFLEENGINIQNCRG
QSYDNASNMSGKYKGVQAIIRERCSVAYYIPCTAHSLNLIGKCAAECCPNAVEFFNLLQNLYSWFVSSTHRWQVHRKHLR
GLPVTKALSDTRWSARYDAVRALNKGYHENMSALEELQSDENQPRDSRLVAEGFLKKLQQLEVAILVEVWDTVLERFQKT
SLTLQGSKLPVNSAVHLLESLLEFVRSQRSEFEYYEDKGIAKSVVKVYKETSKREKTRKRQFDEGCSKETIFSPRERFRC
EVYLPIMDALSSAVQHRLHSYMHIQNKFGFLSNICELSKDDIRHAAIQLMETYVNDFEDCFPSEMIHFSEFYKTVSGQEK
KKSRNSSTEIEMLLLLNENMCSHIFPNVHIALRIYLCMAPSNCCGERSFSKLKRIKNEARNSMGQERLNFLSLMSIENDV
VDSLSFTDLIRDFALRKARKKSI
>ATCopia26#LTR/Copia 138-4598 [Arabidopsis thaliana]
MSTELALASSTTPARTETRRTISPYDLTSGDNPGTLISKPLLRGPNYDEWATNLRLALKARKKFGFADGSIPQPVETDPD
FEDWTANNALVVSWMKLTIDETVSTSMSHLDDSHELWTHIQKRFGVKNGQHVQRLKTELATCRQKGVAIETYYGCLSQLW
CSLADYQQAKTMDDVRKEREEDKLHQFLMGLDESVYGAVKSALLSRVPLPSLEEAYNALTQDEESKSLSRLHNERVDGVS
FAVQTTSRPRDSSENRVCSNCGRVGHLAEQCFKLIGYPPWLEEKLRLKNTASSSRGGLSSFKGKQSHGRGSSINHVASSG
MAANVVTNSSLTSPLTSDDRIGLSGLNDSQWKILQTILEERKSTLNDHQSGKYFLESWIIDSGATNHMTGSLAFLRNVCD
MPPVLIKLPDGRFTTATKQGSVQLGSSLDLQDVLFVDGLHCHLISVSQLTRTRRCIFQITDKVCIVQDRTTLMLIGAGRE
LNGLYFFRGVETAAAVTSKALPSSQLWHQRLGHPSSKALHLLPFSDVTSSTFDSKTCEICIQAKHTRDPFPLSSNKTSFA
FELVHCDLWGLYRTTSICGSRYFLTLVDDYSRAVWLYLLPSKQEAPKHLKNFIALVERQYTTNIKIIRSDNGSEFICLSD
FFAQKGIIHETSCVGTPQQNGRVERKHRHILNVARALRFQSGLPIEFWSYCALTAAYLINRTPTPLLKGKTPFELIYNRP
PPLQHIRIFGCICYVHNLKHGGDKFASRSHKSIFLGYPFAKKGWRVYNIETGVVSVSRDVVFRETEFHFPISVMDSSPSL
DPVLVDSSELEEISMTPPVTPSSPATPSSPVTPSSPVTPSSPVSPSSPVTPSSPVTPLSSTTTSAAIDTIEDITTDLEDS
TSMDFFPDDEDEFSPTATESPASSSSPVHPPAVQLELLGKGHRPKRPPVKLADYVTTLLHQPFPSATPYPLDNYISSSRF
SDNYQAYILAITSGNEPRNYNEAMLDDHWKGAVSDEIGSLENLGTWTVEDLPPGKKALGCKWVFRLKYKSDGTLERHKAR
LVVLGNNQTEGLDYTETFAPVAKMVTVRAFLQQVVSLDWEVHQMDVHNAFLHGDLDEEVYMQFPPRFRTGDKTKVCRLRK
SLYGLKQAPRCWFAKLTSALKNYGFIQDISDYSLFIFHKNGVRLHVLVYVDDLIITGTTIAVITEFKHYLSSCFYMKDLG
ILRYFLGIEVARSPEGIYLCQRKYALDIITETGLLGVKPASFPLEQNHKLAFATGETIDDPLRYRRLVGRIIYLATTRPE
LSYVIHILSQFMHNPKPAHWEAALRVVRYLKSSPGQGILLRANTPLVLSAWCDSDFGACPHSDRSLTGWFIQLGGSPLSW
KTQKQNVISRSSAKAEYRAMAETVSEIIWIRELLPALGIPCTAPTTLHSDSLSAISLAANPVYHARTKHVRRDVHFIRDE
LVNGTIATKHVSTTSQLADILTKALGRKEFADFLAKLGICNLHIPA
>Poseidon-10_HM_pol#LINE/Penelope 217-2707 via tfasty with Poseidon_Hyd, 1 frameshift.  [Hydra magnipapillata]
MTLKLYITAKYGADVYKQTEQLQLLKKSVAKSKNQYIFLQKCEKHKLIPKSLRINSPVNTKRAVSIVIRYRFEILICIKN
DAKKRFFMLVKKLKNLQKDLKVILDEIDYKKVEQVTEKAREIMFLKSKERLFKKFKILQNEFENNHSNKICKLTTHTKNA
VLNLCNDDIPKNQNNLLNLGPHFVPSLKYIPYMDIIATTETSALKLEYSNKIEDAQDLRKNVLKELKMGKKINQNLTREQ
RKALMEIKKNKIIDIYPFDKGNGFVRIEHDKALEKIREQIGPTRILSEDPTSSYAIKIKTYLSQLNKKQRFSKTEYDSIY
PSDPIPPRMYGLIKAHKPEKSYPMRIVVSTIGTPNYGISNYLVKKIQPVLNKNQTRLKNSFDFISKANSWEIDKNEVQVS
FDVINLYPSIPLKEATLILIDQLNKDDSYKYSTKLTISETKQLIELCLHRCYFLWNNEIHELENSGPIGLSFMVVLAESF
LQHHEQNAFKIAMAVNPPLDLKSYLRYVDDSHARFSNTQEAEQFLIILNKQHPAIQYTIETESENRTLNFLDLTIINNNK
GKYEFKVYRKEAITNIQIKHHSNHDPKILNAIFKGYVHRAYSLCSNLYLQDEINFLIQMFNENGYNICQLKRIANLIGNK
RSLKINKIQSDSLNIPTVSLPWIPSLSPKLRKIFRKAGYRVVFKSNPNLKTLLTSKNKTKLPQNSQPGTYLIECKCSKRY
VGETKLQIRTRTQQHLKSLNEGKHYQSAIATHNKFCSQEIKWENVKTIKVETKKFDRKVREALEIQRFQCSPLHGGINLD
NGQFVKTKFWTPFFTFLRKQERSHSTADVS
>Penelope_SM_pol#LINE/Penelope 1-2370 [Schistosoma mansoni]
MVHLMITDAHYRIRKYQHVIEDQKRKLQQTLTPEHFETLSTAIETLCKRHKEKRRNILKKEIFKISKPTIEENTNNSVVN
LSKQPLTNTEEQLLRKRLNYNTSDAPKLAFYAALESLLKTSGISEETQQEIRQSIIPLTQRMKGNNQLTSQEQTALKKLR
TGKDIVIVPADKGRTTVIMDKEEYIKKAEEILEDKSTYKPMDINPVKKLDNRISKTLNKLVKAGEITKQDQWRVKSNGPV
LPRFYGRPKIHKPNIPLRPIVALPGTPTYNLSREISRILKHFVDSSNHSFKSATQFLGQIRNIQINDDELMISFDVTALF
TSIEPNLAKETLSLLLTNDENLAKYTKLQSQSLLELMDLCLTTYFQFNNKIYKQTKGTPMGSPISRLFAEAVMQRLEASI
LLMIKPKNWIRHVDDTFLIVKKEELEHTYKLINNVFNDIKFTMKQESNDKLPFLDILITRTNTKKPETQVYRKPTHTDQI
LNYNSNSPRTHKVNCVHTLFKRARTHCYTIPAQLYVVLYLKTILQKNGYLINFIKKYQPHPSSEIKSTTEINKRITIPYI
KGISETTKRLLKAFRINVAHKPTKSLHSILCKPKDEITKEDKPNIIYKINCANCNKHYIGQSGRPLHLRLQEHQLAVKHH
DMSSLISMHVDNYRHTFDWKNVEILDRGNSKNTREFVEAWHSGQSAINKHIEINPIYQPIKKIMQEHRSKNQTNRRYNQN
KEINNDRFKVNKNQSTSRCRGQAVNHMWRNSNTSLLPEVCADDLVQKDDESSTTKPSSSENKPTSKSST
>Pt1_pol#LINE/Penelope [Phaeodactylum tricornutum]
MPAWLYFSRPLNAAFHNLCSSATTVPSNTRSLLGLGLSFCVRRSRTGGPRTVDFRRFRRDCFTKMLFAGSDPLPPTKLFI
RSTWEPPPDEIPPEFRVRVATFSRDVRRLFRRQSCSSNLLPSQSAALRTLRTNYSLIVCKTDKNLGPAIMDRSTYICRAF
QDHLADASTYRRLSEITATNRISAVRRIILGFISTTFPTRNDPTRKFLLRSLEQVSDPFGYFYILAKIHKTPWKTRPIVS
VSGSLCHGLGRWVDSQLQKLLPSLPYVYNSSTHVCQRLRVHSDLPLSARCFSLDAVSMYTNIDTRHALSEIRAYFDSSGI
CERHGVQSMALLKGLEIIMLHNVFRFGDTFWVQKTGTAMGTPPAPMYATLYFAIHEHRILPSFSRELVEYGRYIDDGFGI
WIPDPTLSDVDNDARWLSFQQAVNDYGRLTWEFTPRCSSLTFLDLFIELVPHEPIRTSLYEKALNLYLYLPPHSAHSPGM
IRGLIIGQVRQIFLLTSTHGKRTELVRKLFLRLRARGYSRTMLLPLFNSALVLAESLLRPAPSASLSDSPPVADPVLFLH
VQYHPLDVPTATLQQTFASTMLHPPGEPPLPDLRNRSFSRFGCNRLIVAYHRPRNLGNLLAPRRIRTTNDAPVSVILRDF
DDPVGVINPDPLSLEP
>Proto2-2_CS1_pol#LINE/Proto2 1426-4620 [Capitella sp. 1]
MPRTWSESLTKNFGQKESAAGNGCHSLQRIVMEMIPKKIIMMMMNNEITQNLKVCTYNIAGFNRCNWLYVQQLCDNNDFV
FLQELWLHSSEGHRITESLSNVSMHFVSGMPDDEIHVGRPYGGCCIIWNSKLKCKVSPLPCGNSRVCAIKIDLSDGPLLL
INAYMPCDTQVAYHDNQLVFEEVLNDVADLIQISNIDRIVFGGDFNTALSRRASTHTRSLNQFVTNESLSFLSALSCYEV
DYTHESDAHGTRSTLDHFIVSSQLVCSVNRVQCDHNALSSSDHTALLLSLSISMPSISNGQSVPRRGPVPLWPKATDAHI
ANYRNSLSESTEDLTPPYEALRCDSPQCTAHTETILSYYNALISLCLSSGRRSIPHSPVSRSGSRRSVPFWSTHVRPLKD
NALFWHAIWKSCDSPATGALTNIRRSTRAKYHRAIRYFKQNDQLARFTRMGEYFVNQGRDDFWTEVQKMRGNNSATPTIV
DDCLSEDDIALCFREKYNTLYNSVGYVPEEMARLRQEIEANACRHEGEMCRSHVLSIRDVTIAVSNLKRGKHDGHLGHYS
DHLRFAPNRFLCCLSLTLNSLLVHGLVPDEMALSTVSPIPKNKRKSLNDSDNYRAIALSSIIGKMLDRVLIEKCSALTDT
SDLQFGFKARHSTNQCSFVAREIIEYYHSRDSDVYITLLDASKAFDRVEYTALFRILISKSVCPIVARFLLNLYTQQQIR
VRWGASHTDSFASSNGVKQGGVLSPLLFSLYLDPLLRQLESSAFGCWIGFQYCGALAYADDVVLIAPTLRAVKEQLKVCA
QYAQTYQVSFNATKSKLIPLCRNDPLTSTAFSVSLMDEPIECAAQDKHLGNVIGFFNEEEVIDNVIKDFNKRVGMIRSHF
KWLAPDCAYHLFKSFCMPLYGSVLWNFSHRSVNRFYTAWRKAIRCILHLHPRSHSCFLAPVCNDVDVEIQLLCRNVRFLR
SLERSNNRVVRCCFQLVQNGSRSTVSRSFSKLCDVTQKSRHHIVESVCHPTALFEISNDHEEIAGLIRDLLALRAELKLD
QNLNAHDIEFLRDIEFSIQELCTA
>Proto2-2_CS1_gag#LINE/Proto2 369-1562 [Capitella sp. 1]
MSETDATPPDDPGDQSSPVTNALLGYVFNCMHFSSVYNLRAVVLGHFSADAIHKAKETLAQHVASSVVGEAFFTTRRGSS
ARGKAKARTGKAKEKEEMELDDIIEAMEAMDKAGVSVEFHIPAFELHLLPRTRPEDLLSVTFMENVKRLEARVAALDTHA
ALSTEQMSILKQKVDHLETTAHASGSSCVSPETIPMSSMHFPSLNAINSAGTMSSSMDPTSSAPVYSTRDKPFLEPNHAN
PPRSYSVALQKNSDGGTAIPWTKVRKTRKSRPINRTDVKNATQQLRTVTGKSARDSELVGSMPAKHIYVSKLNTDITSDH
ISDYMRKKNIHVRQTRKVSKDEWLHGSFKVAINAEDLERVLDEEFWPERVCCREWLPFIAKNSNGDDPKKNYNDDDE
>Neptune_Sp_pol#LINE/Penelope 3-1430 [Sphenodon punctatus]
CYIKPYCYKNNEIKEGIKTLLQEGLVKGYITEQEFNLLLNSSPRTPVFYILSKIHKKKLPPPGRPIVSASNSVLEPLAKF
VDFFLRPIIPQLQSYSQDSTHFLNIINNTDYGRLKFGSVFLVTLDVVSPYSNIPPDRALTIVRSSLKLHHVQGPPPGYLC
HLLGLFMTKKWVSGFFYLQNLGMAMGSPWLQKLQTCLWVLMSTVLYLTLIQTPFIDMYTYGGGLIWTGSEAELKGAHEFL
NGCHRNISFYLHYDKFSINILDIRVTMEKEGFTTFTYVKPTDKNTYLHYHSFHPLHLRKNIPNGRFLRARRNCSSDVGYR
LESDRLYQDCSRGYPRRYLDSARTRVSRFTHKELLDKQQNNSATVRHVCSLTFGHLSTWIRSFILKYWRLISHSPSCDLP
PLFVYKRTRNWDDLKPLALQKDTKLFVTNGKTYYLKFFSTCNTQRVIYVLKCTTY
>Neptune2_Ap_pol#LINE/Penelope 1-1542 [Acropora palmata]
ANTRPVVDSENIDKYRNTAKKIGKYRNTASKVDEIPKLQKRGIRRNLLKDFDLFARRMRLKDIFSRERNKQHPFHVKSTW
EPPVQQSVALETFLEEVEFELANSPSKRPKDNLSPGERRALHNLLGDKTIIVKKADKGTTTVIMSREQKIKEGQILLNDL
DNYRPLEKQMADETVEKIKQLTTSMLTESHIDEMTVKWLSQTPNPPRIPEFYTLTKIHRPTLVGRPIISGCDGPTERISC
FVDRLIQPIAQQQESYLKDSKDFINFIENTKLPKNTILASKDVTSLYTNIPQEEGITTVCKAYEDFYKNRLPIPTNFLRR
MLCLILKENSFQFNKRHYLQTHGTAMGTKMAVAFANIFMAKIEKGIISKSIIKPLVWKRYIDDVFCLWDTNEDNIKEFVT
RANHYHDNIKFTAEISDSEIAFLGHKSVQRREIQQRLPPSMCKRIINKQRPFNTRNFYSCHPPGVKKGFIKGEALHLLRT
NSSHSTFNKNMQSFKT
>Penelope3_XT_pol#LINE/Penelope 192-2516  [Xenopus (silurana) tropicalis]
PEPFFRSRHKKRKFTRRGGGGKSQRQTPQKTDTVIFNLSQHVLTTGEVSLLSRGLSFVPVNNNNPFDFEVDLFRFQRKLK
LRDHFKDVRDLSCEKFRPVSTFDPPNTATSIKTFSQIVQRDTNEIFGSPKKFFSNLTKAERDAISSLRNDKQLIVRPADK
GGAVVLLDLPYYKQELLQQLSNTYVYDRLPGDPTKKFKQKLDRELELALSAGWISHDCYNFLVSKFPRCPVIYTLPKIHK
NLSAPPGRPIISARGSLFSNVAIFLDTFLQPQCTRMKSYIADTASLLEILRQIGPLPENTLFVTLDVCNLYTIIPLEEGI
TACRKALVESHTGAPPIEFLCSLLRLALTCNYFRFERTFYLQKTGTAMGSNVAPSYANLYMNSFETEFIYPVYMDQILLY
CRYIDDIFILWHGDHIGATSFVASLNALPTPVKFTLNYAKDMIDFLDVRIFRTPMGVGTTLYRKETDRNTLLHAHSFHPP
SVIKSIPYTQFLRVFRINTDFAIASQQALEMCNRFIERGYTADFLYSEMEKAIKRTRGSSSEVRPNKTQSERMVFVTNYT
PVSHDVNNALKKHWPILQLDTGLPFTQMPPPICAYRRGRSLRDILMVTDLKSESSGTWLKPGKTGCFKCGGCITCGCLIT
GNKFAHPHTGRKYLIRYRLTCISDHVIYCIMCPCGLYYIGKCVTSFRIRMNNHRSVIRAALASGESDTPLARHFVQQKHS
LPMLRAILIDHIPLPARGGDRSKLLLQREARWIRRLDTIAPRGLNEMFSLSCFL
>Penelope-12_XT_gag#LINE/Penelope 542-1297  [Xenopus (Silurana) tropicalis]
MSLRIGSQAGGEPLTFNVRERNERRKENLCQIFSNPITANLSLLSSNNKELLRNLKDALLQQTKSWWNKSFFEQYVKQGL
VPRGLRIHTYPSFDLVNAVLKEKWEETLTTCSLELMNILIINEHEKLEKLEREIENIQQELDTKNIEIHKSYERLLTEID
KYESIVIERKKQKLSRDQQDFETGSVYTWPHKITHVPRKLDKELDTSDTDTEPQSRRLVRSRTDILESMTSQDRPRLKRN
RGEQSTAYTRNA
>Penelope-4_CQ_pol#LINE/Penelope 1880-4429 [Culex quinquefasciatus]
MHSAKTLNQTTITMATKPSEHNKFIGLKKIIAGIHKDIAFLKKCVEHRVTPTSHKIRTKGHTDSKIIRRVELELVKESIK
KLYGRLSIKTLECYSLHLKLAKEFPIEFEAFLTKVKVAEKCESERKRKILDNKFRQLISHIAPTMKPVVKPLEEFVVNRS
SETFSEEQLTLLNKGLKYAVSSKPNLENIVIDIETVINANSIDEKQTKPPPLLPAQINSVRMTVSKLIREATTKHQDNAE
VRVVKELKEKPVYYLKADKGNRVVIMDRDEYDKELLEKLGNREKYSLQRGYTLIDMVKKVENTIKECAGLLKSVGKTAKS
LRVPNPTLPRIKALPKVHKPGNEMREIISAVDAPTSRIAKWLVEEFKSMPKPFPSRSIISSQVFTKELLESGPIAEDEIM
VSFDVTALFPSIPVKNAIGTLRDWLQSQYEGEPWRQKTIQYITFVKLCMEQSYFQFRDCIYQQRMGASMGNPLSPFMSDV
YMAALEHELQTKNLLPERWWRYVDDVFCIIKRDSLTTVLDTINSARRSIKFTYEMEVEGKLPFLDILILREPGCPSSFSF
EIYRKPTNTRRTIPATSNHSFQHKMAAYHYFIHRMTTLPLSEAGKQKELEYIFETAEINGYSRTTIQAIIDKKERKLHRT
SLTTLTPSAEPLRRAAVEFDYRITRPLRQKLAKFGIDLVFSSRNSQLESILGSTKDPIPTLGKPGIYEVSCGHCDMSYIG
QTKRLLQTRLDEHIHTYVKIAMEEKRKGFVPHFKSAVTEHIIEEKHNITASDAVILRHITNPSKLAVAESLEIFKAGNKR
LLNKDSGNGSTWLFKLLPIQAQKKNEEVVPTVTTNTDTPAMNLQSRTEH
>Proto2-3_CS1_pol#LINE/Proto2 1423-4419 [Capitella sp. 1]
MNLKFCTYNSHGHGAGRFSYMKTLLSKYEFLLIQEHWLSTKCLHLFELEIDKCCSHSISGMPDESIMIGRPYGGCSIVWR
EGLQCKITPVTSNCRRLCAVNVQSNDYQFILICVYMPIDGASIDDYNDVLNEIGNLMSSVDHDNVIIGGDFNTDLVRYNS
LNTISLVDFCSSQYLVNCLNIDGVAIDHTFKSKVTGSTSCIDHFLLTENLLSSFVSAGVSHDIDNFSDHDPLYLCTSLSA
NVTPNEQVNNVHTRIAWHSASSIQIARYKTTLNEMLADVNLPSCTADCIDVFCTAHQQSISKFHDDIIECCTSSALSSIG
RPTAVQGSGARPGWSRYVKPVRVEALKWHRAWKERGRPDHGPLYDMRKMTRARYHNAVRFIKKQEQILRDTSLANSMSDL
DYNQFWREVKRIKDSRKPVASTVDDFNTRAEICKVFTDKYSALYNSVTFDSSDMIRYLDNINRDLLHDSTASYLYISTAD
VKKAVSGLKTGKSDGQNQQSDHLINGTPLLFRKLAQLFTAMINHGFAPDSFLLGTLSPIVKNGRKSINSSSNYRGITLSS
ILGKILDRIIMNRFSGSLYSNDFQFGFKQSHSTVQCTLVIDEVSKYYTSNGGEIYIMLLDASQAFDRVNYVKLFRALSAK
GMCPLICRFLAYSYTQQKVRVKWSDHTSEPFEVTNGVKQGGVLSPTLFNVYVDFVFKKLKEKRLGCHLNGHYSGAISYAD
DLTLLAPTKHALQVMLQEVNTVARDLDIKFNGAKSQLVAFNKQGHIPITISCMGAIVHSVDNAIHLGNSVGINSDCIRVK
KCIREMVMHCNSLCTLFPCVDIEVKYRLFKTYCMPLYGCQLWHLNSSNIEKIHLCWRKCLRRLFNLPRRTHCDLIHIICQ
DVPFINQILNRFAKFLQGIVKSVNIFTRSCLSSVLSGSLSVFSFNVSCLCSKLGIPKFRIPEYNFTARTRQLFFVDDAMQ
SLGGVIRDLIRLRDCNGLINNGWTTCDFTMFLEELCCN
>R1-1_DYa_pol#LINE/R1 2072-5035 [Drosophila yakuba]
MMLDAIKIIQLNVNHCAAAQSLLAHTAAERSVDIMLLSEPYSPGIGNPSMILDESGKAAIKCCSPLHVQERAYLPMRGIA
YARVKGVHIYSCYAPPSDSTDQFEEMLDTLVNHARGRCPTIIAGDFNAWAVEWGSRVSNPRGRAVIDAMMMLDLTLLNDG
RVPTFNNDRGTSFIDVTFVSRGLVANSSWTVLDVVTLSDHALITFSVSSTGTTRSQPRRSLGQAWDTRKFDKDMLQYQID
TLLIPTGDAETMAAELMKILVAMCDATMPRKKKVQRKPPVYWWSPVLQQMRSECLKARRRAQRARGSPHQTELLEAFKAK
RTAFKHGISAAKAQAYKNLLDSVDDDTWGLAYKLVSNKLRKRDVPPSDPDVLANIVAELFPMQSTTWQPLAAAPVSDFPS
ITAQEVVEAARRIKANKAPGLDGIPGVVVKAVALSRPDIFRDTFQQCLLDGVFPARWKSQKLVLLPKGKGPAQAAVSYRP
LCLLDIVGKLFERILYARIEAVTESTXGLSSHQYGFRKGKSTLNALTAVRNIAKNALEGDRWLGGKKEYCAIVTLDVKNA
FNTARWPLILDAMYTMGIPEYLRIAVGSYFRNRILWYDTENGPKSYRVSAGVPQGSVLGPILWNIMYDGILAIRKPTGAE
LHCFADDVAITAVAKTIMETQEKCNATIRAAIDWFEKAGLAIAAHKTEAVLLSSRKKVESMQVSVSGTQVSSAESLKYLG
VLIDHRLSFKDHAKYASRKAAITSAALSRLMPNVGGPRDPARRLLVTVAKATLLYAAPIWSDATKKGSYLNGARMVIRSM
ALRLIRGFRTISQDAALVLAGMPPADLEIKALVLISNGATRDEAYERVVGEWQTRWQMSQRGRWTYQLIPEIDAWTQCSH
KTLDYHMSQFLTDHGCFRAYLHRFRHVDSAQCLYCIDAVETAEHVLMHCSRFSAEREQLKALAGDPLSPNGLITAMTANV
NKWELGHRIIINMMKRVRADETANRAGN
>R1-1_DK_pol#LINE/R1 1719-4250  [Drosophila kikkawai]
MQLIQLNLNHCRAAQDLLSQTVRELGSEVAVLSEPYRVGSSRVWATDRSGKAALWLCGADAPEMRDTKAAEGFVRANVGG
TWLYSCYLAPSLSLEAFGRILDELSSDLRGRSNVVVGGDFNAWAMEWGSSRTNARGRAVLETFASLDVVLLNEGSRQTFS
RAGVGSVIDLTYVSSALASRARWKISEAYTASDHEAIECSIGAAHRTSGSLLPDRKAFRQDTFRPRDFANALEGFTAGEA
DGANETADKLAWAVDGACSQSMLLRRPFRKHHSPVFWWSEEIADLRRKCHRSRRLLQRARGTPRLLACNDRYKAARKELK
TAIKNSKRECFLKLCDAAEEDPWGGAYRMVVKRLNAGGCAPTDPATLERIVGSLFPSGRQVLICPSTELGDIRWVTEAEV
LLAGRSLKPKKAPGPDAIPSRATKLTLSLLTSEVAGLFNKCLLEGTFPDRWKRQRLLLLPKPGKPPGEASSYRPICLLDT
IGKVFERVISTRLSQAIEAAGGLSPEQYGFTKGKSTLDAIAKVVKLAQDAIAGTRWKGGSKSYCLVVTLDIRNAFNSADW
SRTLESLRNFNIPGYLLNVAHSYFSNRVLTLDTSMGPKEHNVSAGVPQGSVLGPLLWNAMYDGVLRLPMPVSTNLVGFAD
DVAIVVVAKELASVEARADTAIQAVESWLAVAGLELAAHKTEAVLISSRKAVETASVLVGGTRIRSQRAIKYLGVIIDTR
LSFKEHLEYVHQKASGTAGALSRMLPNTRGPRQYTRKLLSSVVTAQILYAAPVWAEAASVKSYMRGVEATYRLCAIRIAC
SFRTISEDAALVIAGQVPLTELIRERKEISESLQDRRSPRPTLR
>R1-1_NVi_gag#LINE/R1 894-2309  [Nasonia vitripennis]
MCWGHVSCLHRRGDPGGRTHTRTKFDFSMDEATERNNLRMEGCDVPADGDAVSGGGSKNLVGSLATINDIAAQNREGTGD
IIGGSPQNWXAAERKLEDQLLIIRSNLVKMKAKTNVQKNVSRVITDGMCEIYEAVEVGMHELQRMKQLRQTLTEVQRTDT
EETPRLKRKRDRQTPTPEPGTSDKQELXAKDTWATVTNEETKRPRKRRRMLIKXDETKEPKARKTDRSNLKPRRSAILIK
PAEGKTYADVLLSXRQXVNLTDSKVDVRAIRKTKDGSVLLQLDKEQERQVFQQTIQNVLGQTATVKDVTSKVTLEFMDLD
CVTTAQDVADAINRETGTTTDRNVHVFDANNRGQALAVCEFDAKEATDLLKKGRIKIGWINCRIRPRLRVPRCYRCLGYG
HVRVDCKGPDRRDCCWKCGRKGHVGKACTSAPSCFLCAGRANQDLAHVPGTASCAVFKAALTEYRTKQTKWT
>R1-2_DBp_pol#LINE/R1 2590-5514  [Drosophila bipectinata]
MCCRRLRGRRRRHSAPKRATGSDNRWAXDLSGKAAIWSCGATGATMHSVHSAEGFVRARIGGAWLYSCYMAPSLTTNEFE
RMMDCLGNDIRGRSDVLVAGDFNAWAQDWGCPRTNARGRVVRETFASLDLVLLNEGNQHTFSRAGAGSIIDLTFASPSLA
TGANWRISGSFTASDHEAILCSIGSPQERPRDPNPRGYRVGTLQARNFTEAARDIGNVLPSGANEMADTLAAKLEAACMA
SMQRRSRYRRNHAPVYWWSXEIGSIRAECMRARRLMQRARGSDAFEERHXAFKDRRKALKVAIRDSKRKCFLELCDSAEE
NPWGNAYRIVVKRLRAGSQSPTDPNVLRTIVQALFPAGNQVTQLPTPPADNEAAEEVTEEEVLAIGRGLAPNKAPGPDSV
PNRALKLALALQPGSFAELYNKCIREGTFPTRWKVQKLLLLLKPGKPREEASSYRPICLLDTTGKVFERVIAARLEAAIE
EAGGLSPKQYGFRKGRSTVDAIAEVVGIARNAIAGTRWKGGSKQYCLIVTLDIRNAFNTADWSKTLAALRRFNVPSAIMN
VVSSYFSCRVLLVDTDMGTESYDVTAGVPQGSVLGPLLWNAMYDGILRLQLPAGCDVVGFADDVALVIVAKHREEAERAA
NKAIETMEMWLQNAGLSLAPQKTEAVLVSSRKVLETATIRVGGMAITSQRAIKYLGVMIDARLSFREHLDYIQGKAAATT
RGLARILLNTRGPKQNRRRLLVSVASAQILYAAPIWAEAMNTPSYRRGVDAVYRLGAIRVASGFRTVSDDAILVIAGMVP
LKERARELKELKETRARNEGAGGTPNTAAREDAKERSLTAWQDCWDASTKGRWTHTLIPNLRRWVLRSHGQVDFYLTQVL
SGHGCFRQYLKRFGHAEDDWCPECGSSIVEDARHVVFECRRFARERHRLETTAGRSIHPGNLVEVMLENQMLWDAVASFA
AALMQRLRSIEQERR
>R1-2_DBi_gag#LINE/R1 186-1241  [Drosophila biarmipes]
MRDIVDEIDYLQREVLSAVQGILEEQERAKVTAKKXCAEVLASGNSKRPRGHETGKTLAMPAKKAMHKAPASEASQGGNR
GKHAXTESTSKPQKPPQEWKKVEPKARKPKVRPPRNDAIVIATSTGGSYADILKKVKADPQLEDLGQAVQAVRRTAKGEL
LILLNKVSDPKTAELQSKMKAVLGSNVDVRALTETTLIEVKDIDETTDKTDVICAVKSQFDVELPESAVVGLRAAYGGTQ
TATLRVMPDIGRRLMEKGKLRLGWTWCRIRSKITPKRCFKCMEFNHIAGNCRSQEDCSKCCYNCGAKEHQARGCKAKACC
MLCKRKKEKDCDHPTMSGKCPYFRRALQGLRG
>Proto2-8_CS1_pol#LINE/Proto2 1280-4168 [Capitella sp. 1]
MLVVILIMNLHPQQKSTVRVTSFNCKNVKSSIPDVYTMCCNSDRVFLQETWLSPSEIVILKALHPDFYADGVSAFQDDEQ
LIGRPHGGIGILWRKTLGAHVNCLKYDGERRLMALSVKHGSHNLLLLNVYLPYFTGSDNDDNYHEFMAVIGKAIGIIGTS
PTLNACIIGDFNACTTKNTLFGKEIRLMCDDNGLLLSDVTLLPPDSFTFYSEVHQSTSWLDHCVSTLQAHLSITDINIAY
DVLSSDHFPLAMSFELPTSELSGPEPVRSTTIRDNTASWERATKSDIEAYHRRCSPLLSSIAIPHVALLCSDAQCDNISH
REAISKLYRDITNAMLTSSAASIPTKRQQRHKPVPGWNEFVKEHHAAARLSFTLWVSAGKPRQGSLHEQMSRDRARFKFA
LRRCKRDEAQIKADKLAESFLPLDNTAFWKEVQAQSLRSTPLVASVNGTSGEDAIANMWAKHYGEILNASDTDTSRKRVI
KELHAAYESAVSEGSLNNSLFSPREVEKSIAKMKRGKAAANDGLSAEHLIYAPSQIHVLLMMSFNLSLTHNYLPPFVTES
TIIPIIKDKSGNGSDIGNYRPIALSSAITKVLESLILCKAASFLSSSDHQFGFKSHHSTDMCVYALKEIVRYYLSKSTPV
FACFMDASKAFDKLNYFTLFEKLLKRKMPVLIIRILFYWYCTQQIRVKWGSAMSNYFNVSNGVRQGGVLSPVLFNIYVDD
LSFMLRDSRIGCSVSESICNHLFYADDLVLLSPSEKGLQHLLNLCYNYSISHDITFNPKKTVCMLFKPRTSTFKKHCKVS
LGGNVLSVTPSCKYLGVFISNDCSDNTDLARQLRSFYVRSNYLSRYFSACTPAVKCSLFTTFCGNIYSGHCWSIFKKSAM
RKLTIAFNNSFRRFMFYPRFCSASGMFAFNHVKSLNEILRHAIFNFQKRILNSSNNLICSILSCTVFNSSLWHHWKSVLF
MN
>Proto2-4_CS1_pol#LINE/Proto2 1072-4326 [Capitella sp. 1]
MTSVKRSPKVSGPRVYDAESGYRMYTRIETIPTSMQQIALQIRTSTTTYSRPQQEELRAWVAFRRTIPTTIMGSTLNVCS
WNSRGHAADRLSYLQTLLDGNDFVFVQEHWLFDDDLHRLCSNEDVNVIGVSGMDETDLLWGRPYGGCAIVYHKKLNCSMN
MIALDSRRVCACICKGPSGEKMLFFNVYMPCDTSHDLNTQSKFTDVLDELSSVIYTHLDVDFIVIGGDLNTDLGRHRSMH
VEPLKEFCSRHSLAFCIEQSVSSVKFTYYNDFNAAQSTVDHFIVSENLVPLIVDYSTNVDGDNLSDHVPLSLKLNMSFHY
SNEPRVHPVCKISWRRATDHNIVSYKERLRVKLNSIVLPRKVLLCPDLDCSSHSTEIDTYYGRLIDAMKSAASECIPRQR
KKALAGWSEVVTPYRNKSIFWNKIWVENGMPEVGLIRDIRQSTKKDYKHAAKWVIRNQDNITADRMATKLHSDMNREFWD
EVKRVRGNAKDCAGVIDDAVGEDAICDVFASKYEELYSSVSFNADDMVELRRDVDIDIRSKCCEELCYSNHAVTVQDIKE
ALGKLKLSKSDADPDLSSDHFKRACPELYVHLSFLLTSMLRHTTAPSHVLCSIIRPIPKNRKKSLSVSSNYRSVAISSVL
LKVLDHVILKKHASVLSTSDLQFGFKSGLSTTQCTYVLNEVVDYYTRSNSSVFVCLLDASRAFDRVHYIKLFNLLRSRDL
CPLLIKLMLNMYSSQSLAVKWQNKVSSSFRCSNGIKQGAVLSPVLFCVYMDSLLIRLKESRLGCYVGNVFVGAVSYADDI
TLIAPTLKSAQSLLDICEQFASEFHVLFNSTKSNVIVLNNPFRKNYDLHNLVLNNAAIPYTDRALHLGSFIGKDANKFNI
KKAMQDLNARVNMLVCNYSFSYFDTLCFLFKSYCTSYYGSPLWKLDVNSLEDFCICWRKAVRKLLGLNSRTRSKFLPHVL
NVIEVRSELISRFSSFYLKLIKSENSLVSTCCLLMNETPSTSIVASNLQSLSQYVNKNISEINSHDFKTLRNLIVDTWLS
EIDHSTFVYSKLLIELLQMKSHSSPFMSFHEILIMLNFICLMPD
>KagaAg1_gag#LINE/R1 gi|28569890|dbj|BAC57923.1| gag-like protein [Anopheles gambiae]
LRIHLLRWLNEGRWQEIRAERRQQQQQQQQLQTTSIAGGRLSVDDHQPLQQKNLQQQRREQLNKEQHRLARKQPDKIYVA
PAAGVTYFTLYQKVRLNPNLMEENSQIRRGNRSTRDHLRLLLKQGADAGAVLGKIHEAVGESGTARVVADMGEVIIPNID
MLATEADIRKALQIALEKEAMLALINVWEQRDGSLRARVKLSRSDANHLIDKRLIIGFSSCKVREAPKPSAESRRCFRCL
ERGHMVRECQGTNRSSLCIRCGAANHKAVNCTNDVKCLLCGGPHRIAAASCAVTSMTC
>R1-1_DEu_pol#LINE/R1 1833-4817  [Drosophila eugracilis]
MQVIQLNLNHCRAAQDLLRHTVGEVNADIAILSEPYSVGPGEEWATNNQGKAAIWICNSSAEGPCQVRRGEGFVRIQWGG
TWVYSCYLAPSLSLDAYCKALEELAVDARGKHPVLIAGDFNAWAQEWGSTTTNARGRALLEILAPLDLALLNEGNQETYN
RAGAGSIIDLTFVSSSLARTSTWEIADIFTASDHEAILCSLGTSQAISSIPPCGKAFRQDTLVVQQLETHMRTAELDLHE
TANESAEALATALDAACKASMKERTTFARHHKPAPWWTSQISSLRKECLRSRRSLQRARGTDAQEQRHLEFKAARKALKT
AIRVSKRELFLKLCDEADRDPWGQAYRMVSKKVKAGSQPPSDPVALRAIIDVLFPSSRAEGIRPAIEDLEDEPVEAVTAE
EVLVAARNLASKKAPGPDAVPNRALKVALAQIPEKVAAIYNQCLYEGSFPKVWKKQRLLLLMKPGKPPGEAASYRPICLL
DTVGKVLEKILATRLQAAISREGGLADEQYGFRKGKSTVEAIMRVKNLAASAIQGTRRNGGAKQYCLVTTLDVKNAFNTA
SWSRTLQALKELRIPAYLLKMVDSYLSERVLLYDTREGQKERVISAGVPQGSVLGPLLWNTMYDGVLRLPMGEGTTIVGF
ADDIALVVVAKTVRGVETLTNSAVVKVEAWMSSAGLLLAPHKTEAVLISSRKKVETATVLVGGVAVTSRRAIKYLGVWLD
TRLSFREHLEYAHRRASETTRALSRMLLNIRGPRQERRKLITSVVSSQILYAAPVWAEAMGVRSYARGVEADHRLCALRT
SSAFRTVSDDAALVIAGLIPIKELVRERKELANMAQDSLSSVSVRRREVRATSLTNWQRRWEESSKGRWTFRLIPDVGKW
TDRKHGQVDFYLTQALSGHGCFRSYLKRFGHESEDFCPSCGSGVTEDPLHVLFECRRFVEDRLTMEEILEEPFTPSSMVP
LMLQTPAKWEAIAVYVAKTMMELRALERARNGREE
>LINER1-2_NVi_gag#LINE/R1 215-1753 [Nasonia vitripennis]
MDSELIITLPQAGQALQPTPDVGSDRVKAPVADAGSMDVGGSQLTQTRQEVIEVGHSALKGRLASSDASGCDGVINRGMH
EVWSKIQTADRAEEELMDKIQNHLDKMDAVVGPAKNIHKSVKDDMRKVMSFWKRLISVREASSKTKSSFGLMMSNSSRTS
LTSEEKREVETPRKRKERSPTQNETNKKRKEEDKTPKHGQSAPLATTSSTTQCPPPTTGTLPPWQRVETRKKKKKKEKED
DKINNGVVDQKGTRKSKPPRARPTRPEALIIKATDGKSYADILRKMKADPKLKMLGDSVNRIRKTAVGDLLLELQRTSEG
KATELRQAVQEVLEEGVTVRTLQDVEVFEVKDLDVLTTKEDIVEALRREFQDSGSNAVEETAVKSVRKAYGDTQTAVIQM
PAKMAQQMIAKQKIRIGWVVCRIREIKRNARPLRCYKCLGFGHIGKNCTVTQDRSNHCYKCGVEGHNARDCKNKPSCVLC
QERGATEKSDHAAGSYTCPVYRAAVEKLKKRR
>L2B-6_CQ_pol#LINE/L2 1-2547  [Culex quinquefasciatus]
NWMLAIEIHHQQFNGIFGGVYHSPSSSDRDFLDSFENWLQQVMADDKTNVISGDFNICWNNEGYSRDLKNIADAVGLEQK
VLEHTRISVRSRTTIDLVFANVEDCTVKVLADWRITDHETLGINVEGVCKINMPEKKTEYTCWRKYSKERLQNTLLCDET
LWRNNLPVDEKAQQFSRALATAVGQLTETRMRRSADTKRWFTPHLQAVKLKRDEAYKIFKTTNXAEHWERYKQFRNEYVR
ELQKAKNSSVQQEIQSCSGDSKKLWRCLKDLIKPGGTPEKEIIFDDKTEPCSDEETANRLNHYFIKSVKEIHDSIPTVNQ
PQQDPLPTVRTLDISEFSQFQPISMEKLRKIVAAMKNCAGVENISKRVLEDAMDVVGDKLLDIINSSLNLGVFPQEWKKS
VVVPIPKVPNSTRAEDRRPINMLPIYEKVLETVVREQLVEYVDRAGLLIEEQSGFRKQHSCESALNLLMLKWKQSIENNK
FILTVFVDLKRAFETIDRRKLLEVLRRNRIKGDVWRWFKSYLEYRTQITRYNNSVSEAEAVELGVPQGSVLGPLLFILYI
NDLTKALRRACVNLFADDTVIYVAGDKLDECYEIMNNELAVFADWLKWKKLKLNVSKTKYMVVTTRRSESNCTISVDGEL
VERVNAIKYLGVMLDEKLSFAEHVDYTIRKAARKLGVLCRINRYLSFDNKIMVYKTLIAPHFDYCASILFLATNQQRKRM
QIVQSKAMRMILRCDRLTPRILMLDSLQWMSIRQRVEYSTLVFIFKVVNGLAPQYLTKTVQCGRDVHRHFTRQAGDIRLL
NFKKSCTQNSLFYRGYNLFNMLPESTRATTNLREFKKLCKPFVRQRPLE
>L2B-4_CQ_pol#LINE/L2 1607-4432  [Culex quinquefasciatus]
QSTKNKNNKQKWSVISLNCGGLSTNFEEFKLLVQTYKPRLVLVTETHITEQLGDEHLGIDGYNHVSCFSDSRHTGGVMIY
SQSNIEYNVLCKSQIGRNWFLSIDVTRGMKIGRYATLYHSPNEPHATFLKILEENWLEQFVDLSKFIVVVGDFNIDWSRE
TSDASNLKQICDSLGLKQNVQDYTRITRLTKTMIDLVFSNCDIGVRTVSEMKISDHETLCWYNVNECTVASKSMKKITCW
KNYSKSALVNLLRQNRNLTFNFENIHENAINLISNLKKCVQTLITEKLVSVDKCCKWFSVELLQMKQRRDQAYLKHVTEG
GANSWAIYKAFRNEYSSTLRRKRKEYIQKSIEENKNNSKELWKILKKMIKPESAPANTICFDNVNEKNRVEIPRKFNEYF
VKSVEEISNSIEEVNAPPELECQFSATNMSFFETITLEKLKSVIWSLESKSGSDNISASVLRDAFEVIGQDLLNVINQSL
ISGVVPDSWKESVVIPIEKVQGTMNASEFRPINMLPLYEKVLELTVKEQLLNYLNVNKLLAAEQSGYRKNHSCETALNLV
ISKWKKQLESRKKIFAVFLDLKRAFETISREKLIAVLKQYGITGNVINWFSSYLVNRSQRTKFNSVISVSIETLVGVPQG
SVLGPLLFILYINDMKRVLKHCDINLFADDTVLFIASDNAVAAIEKLNFDLENLSRWLKFKKLKLNVSKTKYMIIANNKA
SLPNLIVSINGERLECVTEIKYLGVIIDDKLDFKKHIDYSIKKIAKKFGVLCRLRNDLTQWSLIYMYKALISPHFDFCPS
IIFLANEQQMNRLQKIQNKIMRLILKCNRRTPRQSMLNALQWLSVRQRVTFLTVVLIYKIANGMAPEYLQKILIRGSDIH
QHNTRMASEIRAASFLLTSTQNSLFYKGIKLYNTLPRDFKNEKNFAVFKRKTLGFVKENVGI
>CR1-46_HM_pol#LINE/L2-Hydra 1406-4464   [Hydra magnipapillata]
MDERAINSNTCSFSLCAYNCQSLKSNSCYISTLINSFDIIFLSEHWLSNVERFILYDLSAPTHQLFFHSAEKKEYGRPFG
GNAFLVRKNLLLSLHVIHEDEHILAIKGSYGNSVFIFIGVYLTSCRNTSESLEQYLSQLSVIASIINTYEDEGECIIAGD
FQSFPENIYDTEVRNNQTRNNFSXHLSNFLETNELSFLDIISGTGPTYTYKHKTLNNSSYIDHIAVLKESSICFTNCKII
PPSHLNMSDHLPIATHINLKNNSLTPVINNILKKYNTIPKYAWKDDNFIEIYNRNLSQFFKDYTFIGEAIEKQTQTTCEK
INNAATLAMEECFQKKEFCIYSKSWWTPEVKLCKDILSFHFKEWKKCNYNRSQESISFNKYKLARKNFRKTVKAAHNLKI
NKITKNIEYLRKTNPQKFWNNIRKIKSSPNTRIFTINKKQDRKEIVEEFRQNFNTILNTPTITNNNSEHRNIPQLIVEPN
KILLSTSDIESCIRKLKSNRSRDSCGITAEHLKYSSNNNLVTWLSKFYNXIFNNGAVPEYLSTSIIIPIVKSYKKSLNNS
DNYRGISITPILTKLFEYIIMQVCPEISDSHSHQFGFKQNSSTLHAEFLLSETLKHYNNNNSPVYICSLDANKAFDSCNW
DLLFEKLYYNKNLSLSVVRALQSLYRSGTANISYLGHKSNNFRLSQGVRQGSILSPHLYNIYTESILSQIVSDCKVGTTV
MGLYTGIIAYADDIILQSPTLSGLQELINKVQTQCQNLYIKLNTEKTEFIISGKSLVTKNIIQINGFFLKLNNKLKHLGF
LWENQGHGQNIATIQSANVNERIIQFQSISRALIKSGIRFCQPVTIVHLFKSLAIPNLSYGLEICDYNNTFLNKLDAVGR
SALKFLFSISKYSKNYLHSYFKIDDVSTILVQNKLNLFIRLLSNPTCFSLILTQISNVNKENCFINEIMKICNRLELSFM
QCLIKGEKIIIKRRNDDVEDNIAEILNQSFEFWNIREQRMIFKNLMEESIPRRI
>Baggins1_pol#LINE/LOA 1723-5385 [Drosophila fruit fly genus]
SGHLQISNADDGADHLMVGSTGIAQVNIHRAKAASAVLARMFTKQHLGLALVQEPWYNQGIKGLYVKNAKVIWDQRASSP
RACILACRSINYYILTEFLTRDCVPIVVEDVGAAKKTVVASAYFAGDEACPPPEITALAEHCKRMHSPIIIGCDANAHHV
IWGSSDVNQRGESLLEFILNNNLEILNVGNVPTFVTRVRSEVLDITLSSRSVASHISDWHVSPEESMSDHRIIRFNIGLN
LECSERKRNPRNTNWEGFNASLLRDPVTRVTGKLRTTLELEAAVEDINSCLTNAFRENCSLGRAKRDKDAPWWNDQLEKL
RKATRRLFNKAKREGNWDAYRNKLTMYNHEIRKAKRRNYRTFCEAIVNTCEGARLHRAISKGVPESNQALRKEDNSYTIG
SKEKLELLLATHFPGSTLQTDGNTPVTAQSRPRATDWAKAKSIVTTERLRWAIGTFQPYKSPGPDGIQPILLQRALSQLA
VPIRKILISSLALGHIPTAWSIAKVVFIPKAGKKDITDPKSFRPISLTSFLLKTLEKLVDVSIRSTLLVEHPLQRTQHAY
RAGRSTDTALYHLKSLIEDSLTHKEVALCAFLDIQGAFDNTSHEAVNASLARRGLDATTSRWIKSLLASRRAMATIGGQS
STVSTTRGCPQGGVLSPLLWSLLVDELLDRLTRRGILCQGYADDIVIIARGKYEETLCDIIQLGLNMTSEWCKEVGLSLN
PSKTVIVPFTNRYKLQRMKAITLSECRIEVSKEVKYLGITLDSKLSFKTHVDNTIDKCTRALFTCRNIAGKSWGTSPRII
RWLYLMVVRPILTYGAIAWGDRARLSTTKVKLHKLQRMACVCMTGAMRTCPTAALEVLMEVTPLHIVIEMKRKATLIRIE
GAGNDCNLTSKDAESLKRDIPLLMQPRDEMPAEHRFAQNFSTHLSNKNSWTSLGKVHPTKPQTIKWYTDGSLTDEGSGLG
VVGPRLKYHESMGRYTSIFQAEVCAIGRCAEFNLQRNYRGKDIAILSDSQAAIKALSKAKITSKLVNEVRTALDKLGAVN
KLTIRWVPGHNNIPGNELADNLARKGAENPLIGPEPFCGVGHHRVLGLLKSIEEEKRLSFWEHLPGLRQSKILLREYNHK
RFKTLMTHGKNTVRILTGLLTGHCRLHSHLHKIGIADSELCRFCCMEEESSAHIICDCMALSIRRNRLLGMYVVPRETIA
ALNPNKILAFIQCIGLQGDL
>CR1-58_HM_gag#LINE/L2-Hydra 138-1541   [Hydra magnipapillata]
MAPRTVSEIFVYLNSDLNTFECNFLKNLEEICSHPKDIIIHNLNSMKENVIRSLRERLFFEVLDSFSSEQFREINVTLDS
ENPMEKNLRKRYKTTKCLEDIFIFSITLCENQLHKEIXKTLISCKNIETAHLDDKFLTSSLKDLLQISKSIQNENIEIKV
ELGLLKEKISIQNELIQDLIVSNDNLLFLKNQPRQNINSSLKHDKNTCSKSIAEDTQNVNNSCGKLFKSIPKVSNANTEN
LKSDYYAQCENKLFNYHTLNENKNSNVTANAAKDNFQQPCGKTNASIYTESQPHNIKTYAKVAAQKQQTSDKTNQFKEKP
SNIDDNPNSFNLVGKNNKPVRQTNILPLEKKHKLSEPIFGTKTPGNETIAGSRIIRRFEVFIGGVSNRINEEHMKLYMET
ELGVTPISITLNRENEFNRSYRVSVSNSEKDKIFNPSLWDNNIIVKPFRKKRIYSNVDQNLVSNGGQ
>Kolobok1-1_SP_tp#DNA/Kolobok-Hydra 80-1826 via genewise with Kolobok-14_HM_tp, 1 intron (404:563) [Strongylocentrotus purpuratus]
MKFYFSPLNSGHLQLLEEHSKRRGLCSSLLLQCTGCKMEHRFTSSPNAVAEGAGQSAEVNKRSVLAACEVGLAREALADF
CGYMDLPPPVNSKSYQDHTYRLHLETDEMKEAGERVREVVLKANPQLNSDDVLDVAVSYDGTWHRRGHVSNHGVGVVMSM
DTGEVIDRAVLSKICKACQLRKSWDREGEEYIKWWDDHKHNCLGNHVGSSGSMEPKAAKILWGRSVEKHRLRYKYIISDG
DSSTFNSIQNMYGDAGEVKKYDCIGHVGKRMFNALDKFRMDGDHSASEKKLMRKGNGHLWGSSDTGTVGMMSREYRNTIK
ECQNRNVIRDEEKRVRVVEYMQRRVLAILYHSCKSDDNEARHQYCPDNGFCEYRNKGTMSDEDHHLDGRFLELLKPVFER
LSNKDLIERCVPGYTQNQNESFHSLIWKRCPKHLWRGPRMVALATNMAALAFNCGAVKGRNRILVRMNLEMGAHALSVAS
KKDKSRLCNAELKARVVTKRKREVERRAKKRAEEGYVEEEGVTYEAGAF
>L2B-1_AG_gag#LINE/L2 364-1710 [Anopheles gambiae]
MSCKKCIRPVLISDDPVTCMGICHGQFHRACTRLTKPAAKMINDIVNVKYWCDDCLEXEGSGASKSDEMLEIKAILENIK
LSIVAIXEKIKTSVCEVVSIGITNMQKSSIDAIETKLASSVSDAVNTGISSIEKKLNAKVACNMPQKNLVEKSDATSLIL
QDTEHTDSIGTTEWTTLTRKRKRTNSGRMETPRNTKLPNVSKIDNQVKNNTGTLIIIPKIDQTCDKTRSDMRANLDPRIH
KITNFRNGKPGQIIVEWASQEGIDHIRKEIQTSLGEKYLTSLPTRKFRIIGLSENYKEDEMVDLIKTQNNGFSTAYIKIL
GKFEKADYKYKKYNVIIEVDHDTAIYLDREEKINIGXDRVYIHESFHIMRCFKCGQFGHKSTTCDNEETCSKCSGKHKTS
DCKSSSESCINCSTQNMQRGLKLNTAHSAFSKECPTFKWLKSRKQQLSK
>L2B-2_CQ_gag#LINE/L2 322-1718 via tfasty with CR1-1_AG_gag, 1 frameshift and 1 stopcodon. [Culex quinquefasciatus]
MSLCGKCEQKICFEDAVPCSGKCGAFFHRSCTTLTKAAAKMINEQPNVQFKCDPCLDSGVDAEIAVLLADVKGIKEELKK
YSDISDSIPGINESIATRIDEAIKKGIEDVMKACSEIFQKKIKTVVESSVATQIEKAIKSNSQKCKNERIVKVTRKRGTH
SESDGLPGSKRRAVDTDDLEPMVVDDEEKDNVFETPTFAEILKGETPEIKNGLQNKKLRVHRPKIVIKPNETNQSNDQTR
TFLKSNLDPKLHKINNLKNGRDGSIIAQCAPGQNLSKVKSDIENRLGxNYTAIVSTGLPKLKIVGMSEKYAPEDFVELLT
TQNDEIFIEHVKVISSYENPRMKYNKFSAIIEVNNDTFDALITAGKVNIGFDRCSVFEAIKVLRCFKCGEFGHMSTTCTN
SETCSKCSESHKTSECTSTVMKCVNCLKKNKEQKMNLDVNHAAFSSKCPVFRHLAAIKKDRMYENE
>L2B-4_CQ_gag#LINE/L2 278-1603  [Culex quinquefasciatus]
MSTSVQCSVCSAAIKEGNEKIYCFGPCGKIMHPKCCGEINMDGIKAMQTNRGLKYFCHDCRNSQCDYNNVLGICNSILTK
VNETEKMMKKEITEQIREYTKTANEANEKGFVLLKDYIMSENKKLEDKLSAKTNTSGRNRKEETSLSGPSGNTRSQSKQK
TAKAGETGSVTQNYAEVLINGRKESEIDQNREIPKEKETVIIIKPKEGDQSAKKTKQQLKEKLNRTENHILNVREGRNGT
VILGVLDNVESVAKSVQEKCGELFNVTVPKPKKPRLKIVKVAEELNEKELREALIEQNDVSDDIELRLVTSFKNGLDEYC
VWTYIIEVDSSSHEFLLELEKVNIGWERCKIVECFGIIRCFKCCCYGHKSNECKSDREVCSICAENHRTNECKSEIECCA
NCSTMNRMRGLKLSTDHVAFSRECPVYKRQVARKRHQIDYTR
>L2B-3_AAe_gag#LINE/L2 297-1682  [Aedes aegypti]
MSVQCDVCCKAISAAKERVFCFGGCGQVLHAKCADLTSAGETALRENLSIKYMCHDCRKKQVSLNDMVGKCDSILNAINE
IKNRLEKIEAKLERNGCDEAVKQCEQNVKMVVEESAKLHGEQLKILESQIAISANSPAIGKGQAEGDEYPSGGSFVEVVR
RKKNKRDTGSVLRSGRVRNRSVATPDKNENTSRSAKAQPISNANVKEVELSVSNKKFGCKVRVKPIATQSNHQTKKDVRN
IINPTQMGIKSVRNGVNGSIIVECGNEDEAEGFVKMINEKLSNGYSVDIEQPKRPRIKILGAXGNYDSNELIDIFRDQND
IEDVEFLKVLKCIPTKNNPENKCSLICEVDANTFERVVRKGKLNIDFERCRVLESIDIFRCFKCCGYGHKSGECKNNLHC
AKCADRHDVKDCSSDKEFCVNCINSNRERKTQFDVNHSAWSVDCPIYLKKVTISKSFINYNA
>Loa-1_DAn_pol#LINE/LOA 1784-5386  [Drosophila ananassae]
MSLTFLQINLHHSKVASAALLLHLAEDGADVALIQEPWIHGDRILGLGASDFRLYTADVTGKKRACILAKKSLNTFLLPN
FSNEDHVAASIEGPDGHLRICSAYMGHDHLGPPPHSLLRRLVEDSERKDIDLIIGCDANAHHSQWGSTDTNERGESIFDF
ILSSKLLVGNRGSEPTFVVKNRREVLDVTLFSHSLADAITSWRVLDKHSFSDHRYIEIVVNFENFTKQAVRNPRKANWEL
YKNILDRSLGEPPSETIETYEGLNAMVDKLTATSAKAYHKACPKKRIGSNRSKKPPWWTSSLAPYKKNARRAFNHAHRTN
TDEAWETYKAELRQYNKELRKAKRVAWANFCTNIQETSEAARLRKILSTTAPIAGYIKNTEGRWTTSSLETLETLINAHF
PGCSSEGTTQVMRSQGHQGSLNYLLSDRNLKWAMDSFKPFKSPGPDGILPAQLSRAGINLRKWIKKIFSTVFTTGMIPKA
WLCTKVVFIPKAGKPSHCTPKDFRPISLSSFLLKTMERLLSLHLQLNINPNDISCSQHAYKRGRSTETALHDITMIAERA
INFKEYALVAFLDIEGAFNNILPCSIIDALTGLGIDNRSTHLIRQILVNRSVEATLGGSTIRRYVKRGTPQGGVLSPLLW
NVAVNSLLRSLEGGGCKIIAYADDVAIAFVGKFPQTLCDLMTGKLEVLSAWAQKNGLGVNPSKTELVLFTRKYKIPNLRL
PKLLGETLVLSDSAKYLGITLDRKLDWKLNTADRTKKAAIALYTCRKAVGLKWGMSPKMVRWLYTAIIRPILFYGVVVWW
PALDNSSCREKFRKTQRMAEVCMTGSLRTTPSDALDTILDLLPVELMGVKTATLAAIRLREANLWSKNSFGHTRLDLXHF
MPEGGTDYCVPVDQPTTNYKVLIPSREEWXARIPGPEGSIHIYTDGSKLNGQVGGGYFCEHLSLKESFRLPDHCSVFQAE
VVAIKEALESPALRGNRGTICIFSDSQAALKALDGFSSNSRTVNDCRRSLNEMAEQXDIYLIWVPGHRDHEGNCAADELA
RAGTTNPLLPEKELVGIPLATCRLKCREFFDLAANRKWSNLQTCKTSRLIWPTRSQKRSARLIALTRPECSLAIGAITGH
WLIGEHAARLAVPHNDFCRSCRDEEEVESVSHLLCHCPALGRSRLKHFGSEELSDLSDLSEISPRGLVAFIKKAGWDHGP
P
>Odin-2_pol#LINE/Odin (fragment) translation of gi|49035806|gb|AY634218.1| Oikopleura dioica transposon non-LTR retrotransposon Odin-2, partial sequence [Oikopleura dioica]
GSIKHANLDKTFALYFNGPALSIVSQSLFRNYRVNGNGFFSTTRAGLRAGVPQGGTISPLCFILFVSQIQNIIKGKEGVK
INLFADDMGVQVTAKNYAELVTKTNDIIEILETALQNMGLMLVGSKSHILITGKSKNKNFGLDLEFQIDGTTIKPEKQAK
YLGTTLSVSNGQLNLDREADIMICKFRNIVDKLNCIKSTLTLTTNGDLLRACAYGTFLHNTSTTPYFSNKTLSQLQKIYD
KGICIASNGKILSSDSEVIRLADCPNRAYLPRLDYERIIKTLNRAGHPTLSKVKGLAACNFMRTLLRELKSTSLAEFTSS
CLSLRITHSGERLSNFCPSLFQHESFLNKMKTLETLRIKHCFSSELSNNQVVARELLCNLLQEELITFTIESPPNIPKAA
SHKLIWPLSFRKYINSLPVNIRNLILTSPNKDALKNKFSKIHNHVENSYCCVDCISFDSTLDNTQAREDDLAAFIHEHQS
KLNDLDLDCSQPIAELVMDVIRMA
>Odin-1_pol#LINE/Odin (fragment) translation of gi|49035805|gb|AY634217.1| Oikopleura dioica transposon non-LTR retrotransposon Odin-1, partial sequence [Oikopleura dioica]
VINFIAKKRAEGLIVIVSAVDAANAFGSPVHSSIIKSLSHAFEGKALKLLAGSLVRSATVANNGIFSNIKKLAEKGVPQG
STTSPAIFCYYAAELRNTLEAGDESSKISIFADDVILITTGKTMEETLAKTEAAYGKIGEKMKGLGLDLVPEKTNVLISG
KEGCHLSDNIAYPESVTCQGNRVKISSSLLYLGSLIGETNHKLTYAQNTQSLNDKLARTTNKIKSLAGYIRRKDLQEVQR
ALTLGTYMHNCEVTSKWPAAEHQRAQNNYVRGLEPNRHRAWYFMKADGNPDISLKERIQTLTESGHPTLFESKLASYYGL
INKTIRIGKAHDLNAELMSATWFVDSKYGHQIISLFNLYHTDRELERERYFSREFGIEPKIQSKEFRAAHHISNIFKVLL
FRNCITLKIIQPKTISSEASKIMWPYSLSLDFNELPNHIRASVIRKDQKAIIQSFLKGNHKHFNQALGCDYCYEGKRKML
PYSVKNLKKNILDSESRAKIKDEAAVDARRTT
>Odin-3_p3#LINE/Odin 7804-9351 [Oikopleura dioica]
MSTTSSGIFTDLHAKRAPPYTSEEAKQYRFNLYIDNVCINIIQDTPEDCLSELTCCGILVTNALNRHGIEITDDTVVLFK
MISCDALLKAILNKVPHEYIDFFASLNLLTNEVQTFSTASCLAGYLQTITEKIVPSGIIALGNNQNSIYRISGELAFIRI
RGELHVTALKQWSENNPIFSPXWDVNIKRILAPSAINAEALTNWIASRLYIKRKGWDIKYAFAIHLASSSPGQRYPTPSG
KVPILTKDAHLSKAELTQKINSPPTVRTTTIKPAELEVLNLANAXLVSKFSNPALLHPLRVFALSKSKKVLDLALRLYRS
KMADVQDFLTIKACKAHNGLMLSSSICMASSPDSNCSSRISEILNEASTLPLERSEHLYKNEIHRIVRDITPNGSLTTLL
SRLVKSINGHNASPTWADLLVEITQLDKKDAAVVKNYCSEKKLLPPDXKGDPNSTLVLLTDSDEDDRIAERASSTLMPRS
VPQQEDLDFSPPSLSPINSPEQDSPPFWTKSTASED
>Neptune1_Ren_pol#LINE/Penelope 1620-3890 [Reniera]
VFKLITGDKNTERPPLGQTVVNLSRKILTPLQHSILDRGLKFIPTPKIANLNYLRPSIERFQRNLSCTYFFRNHPPRGAR
TMFIPKSTWTPPQAAIHPEILKAFASMNSQTVNLSITHEKPNLTRVEREALNLLKKDDSIVIKKSDKGSCCVILNREDYV
SEAENQLNNPKHYAILPKPIFKETANMINNILADLVKTSYLKQKQYDYLSAKPDCRERHLYTLPKIHKNPTKEWFISNKI
PKGRPIISDCGSESYAVSEYIDHFLLPLACQHRAYLKDTTDFVNKIKNLRVPSNAILISIDVSSMYTNIDNTTGLTAVRK
AFNRNPDPNRPDDAILQLLEICLSRNDFTFNGKTYLQTSGTAMGKRFAPSYANLFMAEWEREVLPLCPFDPLFYGRFLDD
IFMVWTYSIEQFWEFFEILNNHHPSIKLTANVSDKSIDFLDTTVFKGDSIAETNKLDIKVYFKETDTHQLLHKSSFHPKH
TFSGIIKSQVLRFHRICTRSSDFNQACTIVFSKLKERGYSKRFLRNIKNSTLAQIAAKNRLYAEVPPGLRSAPCLSSRCK
TCPFISETHYFVSNSTNKRYPIQEHLTCEHSNVIYLISCKKCPKQYVGETKNNLRTRFNAHRSDIKLKKDKPVSNHFNLD
DHSIDDLTLIPIERIEIDLPEDETTKFRQSREAHWIETLNTARPIGLNIHHNVGIAPFVVPFNTTSNRASKIVHAHYKSL
QEKFPHVYKQKMIVAYSKNKNLNDNIVHSKL
>Odin-3_pol#LINE/Odin 885-6587 Virtually identical to Odin-2. [Oikopleura dioica]
MESQXSXSSRAITDAFDKCNVRSPARYXXNQSLSHHQGQXXXLTXLPXTPXXXQNTXGTXPXPXANXXTLNSAPXXQSXC
SLISFNXDDSIISLHNXNVLTSTLLPXSVTEQTVTNAHSSIKKKGKRSLDQANLASQETPSQDRGPKSQRLMQTTLAFRP
KSSPIRNPNNRTPKPVNLFPNRASTPPLHLFAGIIEKSPELASNPLLQSIASTSLEDALERSPARRSLRTAKKSSQSNGG
TSAESTSSSVNDSETTSLNGTLGLSETDNSQNTFIGPPIAGGNIFLNELSKYNTDEFTGQRLQPNFAQLKEFVDSQLVKS
KARVMAGHAKIGNNYFLPQSAFTEVASLMGGSVTLNEYIDSGNHSAIPNDSSEIADLNNFAKNQMECLTRDFHKIGIEPR
EGREIWLTLIGNHCQKIITRLNAIIRDYHSMSLTQKKELYILEPSDFAAIKHIRERLIELLDIFKNGLKLVEHFANGGQW
LGRLIPLPHSKKIFKLMTTKIVHEQHRAQQSPIKTLLNLNTFHLDRMGIAYCNKNYSRIVLGIYANGGLQIKRQITYMIA
KKGNENLRNKTQVKIVKKSLENLLIRNSKVNPKLVDLNNLDKIKYNKEAWNIALKFMFLFNNNILTYDNITKDNYPLHIF
QFHSSLRKPNDSTNCRPIGXNETSDNCDEGNLDSQNANTKVNDRXNAAEIKRGIIPRTRITNTQIPSPLTFLSNLIPLTL
LANIRADWEDYNADLAKTRAAKNFLATNSCDKDILKTINSATIVNPSESDITHLEKTCEIYNKEALNNYKPLRICNINPG
KAKTNGETFRMIVRELPKIDLFCLNEIRLPHSTMTNSAIWPEGYSIMTHDRIEAVNPAMLNTDESLCYSAIMIKNESFSE
CELERHSVGPLTAIEITNDKRQSLVVASIYRFCENDNKAKCFYNILFGSTPEIFCEWIEQILKLTRVNKAQVILAGDWNC
DFMRKRDNDQVVKRLSFMLKHLTNLSHSPTFFRGTKTASIIDHIFVSHPANTNYKNLRLNISLKFDGHTGQSIISNFNTN
YRAFKLIQITKNGSDAIIKKTAIKYFNRIQNSLRMLDDPKKRLESSIKWLNRIYNETKVVVAKICKNKNAFAVKKGKDRV
DYENLLRFLKESPKYAPRSGEVNRPIDRAKIGLSILILKLKKRDQRLAHKKLSHRAENDRNVIWDIFKLEIQQTQAWNPE
QECSPDELADMVDSLQKVTLSANENFTPLVDHPFPFEKLSKISYSINGESQFPSILAMFDLAKQHTKGNSGINKSFLSIL
PISVMDSLIVSPIQNAIDTGTYPLSLRTSRITILPKKSRGIRPIAINEVLATIIEKIVAWNLTNYLEATNSIPPMQAGFR
STLNCANSIADIIRNSETNRLKGNTTATIFLDLKNAFGSIKHANLDKTFALYFNGPALSIVSQSLFRNYRVNGNGFFSTT
RAGLRAGVPQGGTISPLCFILFVSQIQNIIKGKEGVKINLFADDMGVQVTAKNYAELVTKTNDIIGILETALQNMGLMLV
GSKSHILITGKSKSKNFGLDLEFEIDGTIIKPEKQAKYLGTTLSVSNGQLNLDREADIMICKFRNIVDKLNCIKSTLTLT
TNGDLLRACAYGTFLHNTSTTPYFSNKTLSQLQKIYDKGICIASNGKILSSDSEVIRLADCPNRAYLPRLDYERIIKNLN
RAGHPTLSKVKGLAACNFMRTLLRELKSTSLAEFTSSCLSLRITHSSERLSNFCPSLFQHESFLKKMGTLDTLKIKHCFS
SELSTNQVIARELLINLLQEELITFTIESPPNIPKAASHKLIWPLSFRKYINSLPVNIRNLILTSPNKEALKNKFSTIHN
HVENSYYCVDCISFDSTLDNTQAREDDLAAFIHEHQSKLNELDLDCSQPIAELVMDVIRMA
>LOA-1_DGri_pol#LINE/LOA 1987-5610  [Drosophila grimshawi]
MSNVINTGLAQVNIHRAKAASAVLARMFTNKHLGLALVQEPWVNDGIKGLFTVDSKVIWDRRDPAPRACIMVRKSINFTI
LSEFLTRDCVPLLVYTKGSAVSMVIVSAYFAGDAPCPPPEIEKLVEYCRKEKMPVLIGCDANAHHTIWGSSDINLRGECL
TDFIFKYNLELGNVGSTPTFVTRIREEVLDITLINRSLKPHLRDWHVSQEESMSDHRTILFNLKLNTDSSTQSRNPRKTN
WEGYKSTLGLSLANGLSGNPRRPLELDRAIGYLNKCITKAFEDNCPVGKKYMEKDAPWWNDSLERLRVTTRRLFNKAKRD
GIWEQYRESLTSYNKEIRKAKRKNYRNFCEGIVSTSEGARLHRVLAKRAPDANLALKRGDNSFTSTDLQKLALLFETHFP
GSTPLQEEAIERESRYRPSTDDWACAKSTVSRERLNWAVGTFQPYKSPGMDGISPAFLQTGQEILLSRIRKALVSSLALG
YIPGAWRRARVVFIPKAGKKDITSPKSFRPISLTSFLLKTLEKLVDYKIRSTLLKQRPLHPTQHAYRVGRSTDTALYQLR
RTLSAAIDNKEVALCAFLDIEGAFDNTSHDAINATLERRGLDHTTSRWIMALLRSRQATASLHDSTVTVLTTKGCPQGGV
LSPLLWSLLVDELLNRLANSGIQCQGYADDIVIIARGKFEESLCDIVQSGIRITYDWCREVGLNLNPTKTVIVPFTRRHK
LQRMRQIWLSGTLLETSREVKYLGVTFDSRLNFGTHVQNTILKCSRALYACRSIAGKSWGTSPKILRWLYLMVVRPMLTY
GVVAWGDRARMITVKKQLQKLQRMACVCMTGAMRTCPTMALEALMELTPLHHIIRLKQKATLLRISAEGVGGNHILSHKD
AQLLSNELPLLTQPRDEMAAEYIFERNFTVRMSSKREWTTLDEVHPMKPHTIKWYTDGSLTNQGTGLGVVGPRVFYHESL
GTHTSIFQAEVCAIGRCADINIERNYRNTDISILSDSQAALKAIMGTKITSKVVHEVRSKLDLLGTHNRLTLRWVPGHRD
IAGNEAADKQARMGAERPLTGPEPYCGIGRHTIRLELRNEERQRRHQSWSEAVGLRQARCLLGGYNLVRFKQIITMGKNN
LRILTGLLTGHCRLRSHLTKLGIYSSDLCRFCEREEESSMHILVECVALIRRRSSILGAHVLNYKDIVDLNPTKILTFVR
ELGLMEEL
>Loa-1_DEl_gag#LINE/LOA 459-1991  [Drosophila elegans]
MKKNKXIKIPQDIPATGVARHFEERSLDGDRPQAAAHPPRTSPAAQARRPAPQSFPARERGVPAGATLPARPPLASDRPT
SIRQLKKQDALPALGQPGGLDDPNRRGLPGSKVKWYLRYLMQGMTPEEALKKAKEPREQPALGAAPAGKRLNTSRTPPTD
TPKRSRHGTGASETSSRVPGQEGPSTSAAAAEKAKVQARKIPSQPRQNQKPTTAGGRPSSSAPPVIGPRPTYAEAAKKAT
LIRVAILPEGFPAASLTAEELSGLQESVMDEMLTSAWSGPVVFRGIHFRVGYLIIDCLDEGSAEWLKIAVPQLRTWKGVP
LETRTGADIPAAYNATLFCPRSSDRTNEEILAFIGFQNRVETDAWKVISRKNDGAGALLVVGMDQTGRDEIVERDHKLNF
RFGHVTVSGLKKTKKAPEETPNDGICKAVEDTLEPLNVEPKSQSGEQDGQSITSMDIGDDQGDGHPMSSQELAQELLLDD
SCEEAEVTVIDGGGETCSLSSPDITEHQTSE
>Loa-1_DK_pol#LINE/LOA 1248-4865  [Drosophila kikkawai]
MEVRPVPMTLRVLQLNLHKSKVASAELLIAMEQGSADIALVQEPWIASGNAIAGLKSANYNLLHPPTVSRNRTAVLVRKG
LHANLMSHYSSDDLTVVMLESGKKRLLVASCYMAHDRTAPPEELMSLVEASPKDQQLLVGADANAHHCVWGSPDINDRGE
SLLDFILSTNLSIANVGEEHTYVGPTSSNVLDLTLVRGQGTLVSEWRVLERPSFSDHKYIRFQYAFEHSPKQSVFRNPRN
TNWGKFKETIATRLAISPGIVESAEDIEKSLETLSKELLDAYHASCPISDTRKRTRPPWWNKDLSLRRNKLKEFFKIAKQ
AKDDIINEEYKVLLRDYKKEIRKAQRNSWRNFCSNIETAPETARLRKLLSKQPTIQSQLKRDDGQWTEGSEEALTALMHA
HFPGCTEVPDANKHQDLATGVEHLPKDLISSGRIHWAIDSFARIKAPGLDGIFPAMLQVTKEVITPWLYAIYTACLSTGY
IPIQWRTSRIVFLPKAGKCSHVSPKDYRPISLTSFLLKTLEKLLDLYIRNDVGRQLSTNQHAYTKGKSVETALHSLVATI
ERALNNKEYALGVFVDISGAFNNVSTDAIMDRLEATNSSPAINLWIKNLLSCRRVQSDWGTASMVRGAHRGTPQGGVLSP
LLWNLVVDDLIKRFERKAPKITAYADDISIIITGVCPSTLSSIMETTLREICEWAEKVGLNINADKTDLILFTKRYKVPQ
WIPPKINKTRLTPKTQVKYLGIVLDSKLTWRANVVERVKKATIALYASKKMLSSTWGLSPALMHWVYISVVRPTLLYGVL
VWWQATEKKTYNKLMERTQRQALLCISGALRSTPTKALETIIGIYPLDIQAQLTAGKAAQRLVASGNWSLQGFGHSSIGR
DMSSTSDYMIPRTCPDVNTTVFMGPNDWKSGQDHAQYLNIYTDGSKMEGGVGAGIYCSDPEMRLSYKLPSYCSIFQAEVF
AIRKAAELAQSINRPHEAVNLFVDSQAAIRSMQSSAVSSKNVLASRESLDSLSTTKSVRIYWVPSHQGIDGNETADELAK
EGVGLASERTENVPISLRTLQSELERRADASAKSRWRSNSATCRISKIMCKEHNEKLTHYVLHLPRKDCRMLVGILTGHC
LSAAHAVKLGITDNAKCRKCDESEAIETLEHLICKCPALTRARMRYLGSPVLASLEDASRRKPGELLAFAKNTLIFKDLE
TRINSL
>LOA_Ele5_pol#LINE/LOA 689-4354 [Aedes aegypti]
MKFIKFLQVNLHHAKGASSVLSRRFRKEGLDVALIQEPWYNKGKILGIETNKCNLFYDGNQSSPRTAVLINNTLKCYPLT
EFIQRDIVAVMVEVPTTRGITEVVIASAYFPGDALEVPPPEIVSFVNHCRKINKSFIIGCDANAHHTVWGSTDINSRGEY
LLDYLCSSNIDICNKGNEPTFSNAIRQEVLDLTLCNAAIYDKISNWHVSEETSLSDHKHIMFEWSGGDYPRIAFRNPRKT
NWEQYAQCLNSNSFTKDENIDSIQKLESFSQEVKGKIIHSFHTNCPMKQSSSSRDVPWWNTKLERLRKLSRKLFNKAKQT
SDWAQYRRALTEYNREIRKSKRRSWIQTCENISATPVVARLQKALAKDHTFKLGSLKREDGVSTKTPDETLNLIMETHFP
GSISCVDSNSSEPIEYERCSVEALSSDRTVISEPDLADEIFTNARVKHAIRSFQPYKSAGVDGIFPALIQNGEAVLISPL
IEMFKASLRLNYVPSDWRAVKVIFIPKIGKRDKMHPKSYRPISLSSILLKTMEKVLYDYINSTYMLKCPLSDSQFAYQSG
KSTVTALHTLVTKVEKTLSVKEIALCSFLDIEGAFDNASYSSMTRAMKKRNFNKNIINWINNMLAKREITSELGSSSITV
RATKGCPQGGVLSPLLWSLVVDDLLKSLEEKGFEVVGFADDIVIIVRGKFDNIISERMQLALNLTNSWCIQEGLNINPSK
VVIVPFTKKRKFILKALKLGGVQMHLSEQVKYLGVILDSKLNWNAHIEYVTNKATSSFWACSKIFGRRWGLKPKMIMWIY
LAIIRPKVTYASLVWWPKTKEATTQAKLSKVQRLVSIAITGAMQSTPSKALDAILHLLPLYEFVQLEAEKSFLRLNRLNK
FKSGDLVGHLNISQHIHCGPVMTMHEDWMKTVDNSDIPYNVCDTTRTDWDVGGPNVRQGSIKFFTDGSKIGTQTGAGIYG
PGTNVSVAMGSYPTVFQAEIFAILECANICLKRKYRHANICIFSDSQAALKALGAYKCSSRLVWECILSLRKVCQENSVC
LYWVPGHNGIVGNEKADELAKQGSNTQFIGPEPFCGISYCALNMELKSWERQRVMTNWMVTTRCNQSKRFLVPNETITKR
LLELNKRVLCIYTGLLTGHCPSRYHLKNIGQVQNDICRFCNMERETSEHLLCSCSALYKRRSKFLNGGYLPPSEIWTGNP
SKVVGFINSILPDWEKTRQSA
>Loa-1_DT_pol#LINE/LOA 1335-4922  [Drosophila takahashii]
MSLRLLQINLHHSKAASAALLLRLAKGEADVVLVQEPWIAGGRVAGLGTKDYKLMLDPKQGKIRTCILAKRHLSTFLLRN
YSNGDNTAISLELQNGSIRMLSAYMAFEKVEPPDALVRGLVQECEELKKGLVIGCDANAHHTQWGCPINNDRGESLFDFI
LNSNLFLCNRGNTPTFITKTCQTIIDLTLASDSLVSTVTNWAVSDEHSFSDHRFIETTLSLVSPAPVSFANPRRANWXKY
KEILSSFLPREPPESTLCTQELDNIVNKFTEACNAAFTAACPLGKPRGKKKPPWWTQQLSILRAKCRSLFNRAKATNEDI
SWQSYKKELATYKKAIRKEKRTAWQNFCSDIEKTTDAARLRKILSKTAVSLGYLQKADGSWSDSSEESLNLLLDAHFPGS
LQTGHPPGRHTGEGINLNLLLSDRNINWSIHSFKPYKSPGPDNITPAXIQQAGQLAINWLRKIFQTILAVGELPTAWRET
KVVFIPKAGKATHTTAKDFRPISLTSFLLKILERLIGLHIRDIIDPTQISEAQHAYTKGKSTESALHLVVSNIEKSLSIQ
EYTLIAFLDIEGAFNNVLPTAITESLTELGVEPPLVGLIHKLLISRLVTATLGTSTQTRLVNRGTPQGGVLSPLLWNIAV
NKLLRILEGGGCKIVAYADDVAIIFNGKYPQTLCDLMTAKLKILSEWTTKNGLGVNPSKTELVLFTNRYKIPKLNPPTLN
NCNLSFSEHARYLGLVLDKRLKWGLNNQERTKKATIALYSCKKAIGLRWGMSPKIVNWIYTAVVKPILLYGVALWWTALH
KQCILTPLNKVQRMAALCISGALRTTPNEALNAILNLQSLDLAGMERAKSAAIRLRDTGQWKAQLYGHAKILQHDXSIPP
KTDLCKTREYSHTPFEALIPGREAWDRGRPGSIDAICLYTDGSKLDGHVGGGIYSEQLEIRQSFRLPDHCSVFQAEVYAI
MEALVCLRGLNTQNRHINIYSDSQAAIKSIYSTNTNSRTIADCRKSLHEMASQFTVSLIWVPGHRDIVGNCIADELARQG
TTIPLLPGKENVGMPMATCKLIIKNHFXKLANTHWQNTPQCRISHQTWPAINNKKTSELLNFSRTECGMLIRVLTGHWLV
GAHAGRLKAPKNDFCRSCRDEEEEETVEHLLCSCPALCRLRLKHLGYPFINDLTEISQTNLKSLSSFIKSSGWGTC
>R1-2B_AP_pol#LINE/R1 2125-5136  [Acyrthosiphon pisum]
MSLRPLKIVQLNMERAAAVNDQLLAYCQETGVDIAMVQEPYTNRGKLTGFETAPIRCYLSKGTRRRGAPNYLDHGAAIIV
FNANLVIVARCVGTIENFVSIDLDCDLEGIVTLISGYFKYRVPTAVHVEALGPLHQDTAQEVLITLDANAFSTRWHSRIN
DRRGETLVTWLDDQNLRIANKRSPHMTFDGPRGRTNIDVTVCSDNIYGKLRDWTVIPDATASDHNLISFTMTLRAREFIH
RITRFNLLRRNHITFVQEYEARATRRAATDRDLDTMATQAIEDITYAAERHASRSNRRRKTLPPWWSPELTDKRKEVRAA
ARHKATGGRQLYNEKRNEYTMLLRRNKISSWRNFCTLEGVQPWGKLYRWMKGGHKSLTAIGLMRLPDGSVSNSIDESVSI
LLNALIPNDPNTQVDARPVPEEGDMDPVTEEELKVHAWGLSPNRAPGMDSITARMVRVLWPVLAPRLVNIVNECLKTGQF
PNNWKAAQVIPILKGQDRDIALPMSYRPVSLLPVMGKIAEKVINSRLTEQIRPRLTGKQYGFTQGRSTSDAIQRLLTWSN
LCLEQYVITIFLDISGAFDNLTWPALQRDLGSLGASKHMRHLIADYLRGRTATMTIGGVAKTVRVTKGCPQGSILGPVLW
NVTVEALLRTDFPGHVNIQAYADDIAIYVSGPNRRTLIERSTTALLPVLAWARDRGLTFSAQKSVAMITKGALVPGFTLT
FGDERIVSVDNVRYLGIRLDQKKSFTPHFEALKNSSETLFSRLRGTIGAGWGLKRENILILYRGVFLPKIAYGAQFWAHK
LKTLQTIKKFGSIQRRALLGMTSAYSTTSTDALQVLAGVPPLDIEIKWMVNKAVVALLPAHLRHDTMTAMRETLLDEWQI
RWTNSLKGRWTFRFFPDIRARLLLPLSLGHEVVQFLSGHGNFRAKLATFNLQPVSMCACGMGDEYAEHVLFNCFLDADHR
AVLELAVHRSGHLWPCNPATLVSTAKLYAALVKFSKVAAYMERP
>Waldo-2_AAe_gag#LINE/R1 815-2338 [Aedes aegypti]
MGSQGRLLTTGGDSGLEGGPLSMEVNNINVGETANPFAKSGLPRSPPKQCQQQELEQQQLEHQQSEDELHEQRTREQERR
DKSQSEQEQRERQQQHQLQSAWKLPPRQSKVEAAKTVVDELREFVDKRHNVHKDIKDLVARIQGTLGSAVKDWRKVMQRI
EAVETELAATKKALAAAVVQPEKTGIAPRKDSKGKERSAGIGTTPSFTPKRHRSSPGDERQAVSKKPKNVNPKPADEVLR
GGPGDIPWQEVRNKKKRGKQESARKQRPIRKKAKCEAVVVKTSEDTYAEVLRAMRTDPQLKEFSADVQKIRRTQTGDMLI
ELKKDSVNKSSTYKELTERVMGEKVQVKAMCPEVTLQLRDLDWITTEEEVRTAIKEQCDLETVQMTVRLRRAPLGTQAAS
IKLPVDAANKALEVGKIRVGCSVCPLKISQRPEGCYRCLEYGHLARNCEGPDRSKLCRWCGDEGHKAQDCNNKQRCLICK
DKSRNRHATGGPKCPAFKQARNSKPQWR
>Waldo-1_AAe_gag#LINE/R1 757-2163 [Aedes aegypti]
MEVSVIEVEEEVTNPFVKSGLVRTPPPQTQQVQKQPTNEQQAQQQGQQQYSVWTKPPQPPRVETAKKLVDELHEYVDKRS
NVHKDIKALVIKLQGALGSAVKEWKNVVQRAEAGEKELLAVKTALEACRAAEMRRAEADTATREVNAARSIPPGVQSTPF
FTPKRPRASPGDVRPGGPKRHKDVRVTGAKPPPEATDVVNSHTEWQVVGKKNRKKEKASKKKPPEKRKVVRTRNKSEALI
VKASDDSYAEVLRAMRMNPDLKELGEDVQKVRRTRNGEMLFELKRDPKAGSISYKELTEKALGNKVEVRALCPEATLLCK
DLDEITTEEEVKLALKEQCELGEVQMTIRIRNGPDGTKVASIKLPVDAANKALRVEKVCVGWSVCPLSVSQQPDVCFKCL
GFGHFARNCQGPDRSKLCRRCGEEGHKAKDCSKPPKCLICAATGDNEHPTGGSRCPASKRARATKSQWR
>LIN3_SM_pep#LINE/R2 2513-3169 [Schmidtea mediterranea]
RYVPAPVSTPAALSDETDADCTFENFDFEFWFTDDHIDYYFESHIRNPKFAFLKCFVVSILCSNNSKDIFPIPSNIYEAR
VILCPININNCHWILFVYCKVSCNSYFIDPVFKNKRTFENNERAHIINSELNNKFDLQNKIIDHPYINLQYQNNNFDCGP
YICAYAMIVCKEWYYFPVDFILNIRKEIYEIQSFHLIHNTKLSGGGISKDHFPQPSKR
>LIN4_SM_pol#LINE/R2 1867-5150 via tfasty with LIN2_SM_pol, 1 frameshift. [Schmidtea mediterranea]
LSQHHISIFMLTFATLPSTIFIDSFIGKAYINKNFETFFSAFPFHRYPNWNDLLWPMNPEKNLWILFYINKTSGIATIID
PTCENSTLKHQAMTSSIVSVLTTLQNIIEKTTIKVTEVPYPQCQLIKDSSFYICHFASCLVKNTPITLPNIGNVSDITKY
STFIKDLIIQTKTNNITPDDSLKEFYRIHEATNPKKYKTKHAAPNFLVNKDKKKLVFELRQGFDLRQKVTIGRILNPLSN
ISTTPSLDDLINNFSKEPKHMTNILHRETPILSPEYRSHTKINAEEMEKNFSQLDTSSSPGNDKITYADWRKMDPVFEYL
TELFNQIIKNGRSPTAWKTFRTKLIIKPGKEHAPHEVSSWRPLAILDTTYRFFASIINNRLLSWIGVNNLLSRNQKAVGT
PDGCAEHNTVISLAKEWAIRNGSDINIVWLDLADAFGSIPHNLIWHTLSRLKLNNTTINLIKEMYTDCFSIYECENKKTK
QIRVTNGVKQGCPMSMTLFSLSIDFIIKNILIDHPLVINKHNISIMAYADDIVLISKTRTQMREMIKDIIKYTDMATLKF
RPSKCGYFQLKRNHTDTSLKLYNENIPIIGEDNIYKYLGVDFGQKGKHNIDDTLELAIKDTEKLFNSDLHPTQKIQAYKT
YIHSRLIFVFRNCHINHMILDSNRNKIVQHREKQMGFDQKIKRKIKDTLQDIHQNINNNFIYANIKMGGLGIVPSIDEYF
IQSIAHLIKILNSTDRGMRDFIIKELINITQGRFPNQMSDIDLSLKWLNTEIKGDKYVHKTIFSKFHKSIRRLNEKFNII
IKIILVEERFELEIKGNNFATTIDIDSLKETSNILHDLTSEWYAEQWYLMTCQGHIAKTIGNNRQSAYLIKHNVLNDQQF
YFLIKARNNMLSLNYNTHRVKESANTLCRLCNKEPETQAHIFNHCTQTCNARRNKHNNVMEKASEYLISKGFHVDVEKPP
PGIETRLRPDLIIKSKRNKLIHILDIKVPYDHLVNFESAKEENYKKYKDLSLEIGKANNCHTTVSALVVGTLGSWDCGNN
STLAKIGLNRTEIKKLAKICMTTAVISSYRIYMDHVTNRINNISTQKLMPQALSA
>PRKRIR_Tgu_eg#DNA/hAT-Tip100 EXAPTED GENE; gi|224044323|ref|XP_002187398.1| PREDICTED: protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) [Taeniopygia guttata]
MVAQVTVEVCQRWVENCRRADLEDKTPDQLNKHYRLCAKHFETSMICRSSPYRTVLRDNAVPTIFDLTSHLNNPHSRHRK
RIKELSEDEIRTLKQQKIDDAFERKQATQESNENNEQNTVSEEGGEEQEEKVVPLTLEERENKDYLKSLFEILILMGKQN
IPLFGHNVDELPEGIFTSDNFQALLEYRINGGDEVLRKRFEMTAVNLEYCSKTQQKQMLEICENCVREETLREVRDSHFF
SIVTDEVVDIAGEEHLPVLVRFVDDSHNLREEFIGFLPYEADPEILAVKFHATITEKWGLNMEYCRGQAYIVSSGFASKM
KVVATRLLEKYPQAVYTLCSSCALNVWLAKSVPVVGVSIALGTIEEVCCLFNQSPQLLVELDNTISALFQDNDEKGNELK
KICRSQWTGRHDTFEVLVDLLQALVLCLDAVSSDFSVRWNNFIVGRAFVLSSALTDFDFIVTIVIMKNVLSFTRAFGKNL
QGQTSDVFFAAGSLTAVLHSLNEVMENIEVYHEFWFEEATNLATKLDVQIKLPGKFRRAQQGNFDPDMTSENYYKEILSV
PTIEHIIQELKDIFSEQHLKALKCLSLVPSVMGQLKFNTSEEHHADMFKNDLPNPDTLSAELHCWRIKWKHRGKDIELPA
TIYEALHLPDIKFFPNVYALLKVLCLLPLMKVENEKYGAGRKRLKAYLRNTLTGQRSSNLALLNINLDIKHDLDLMVDTY
IKLYPDKVEFQDCIPSNNSEVTNDA
>TRAS3_BM_pol#LINE/R1 3663-7349 [Bombyx mori]
RIAKGSQEDQVPYRVVQANLQRNKLATNEVLVEAARLKIAVGLLQEPYVGGAKEMKTQRGMRVFQNADVSGGTVKAAIVV
FDHNINVVQYPKLTTNNICVVGINTSAWSITLVSFYFEPDHPIEPYLEHLGKIKEEIGRSKIIYGGDSNAKSTWWGSPSI
DNRGTSMLGTLEELELNILNTGEIPTFDTIRGGKRYKSYVDVTACSTDLMDLVSDWRVDEGLTTSDHNAILFNIHTKRAI
GIKIQRTTRIYNTKKANWSNFHEKMRQLIQEKQLTIENIKQINTIAEIEIAENKYTNIIKTVCNQTIPKKKTQEKFTLPW
WSDELAAMKREVATRKRRIRCAAPIRRSRVVEEYLKLKQEYELKAASAQIESWKNYCHRQDKEGVWEGIYRVIGRVTKRE
EDLPLEKDGNILDAKQSVKLLSETFYPKDSTDGDNDYHRQIREEAEKVNCGKQNNNIFEPQFTMSELKWASNSFNPKKAP
GADGFTADICHHAINSSPHVFLTLLNKCLEQSYFPKAWKEATVVVLRKPGKESYTNHKSYRPIGLHTILGKIYEKMLISR
VKYHLIPRTSTRQFGFMPQRSTEDSLYTMMQHISNKRKEKKIVTLVSLDIEGAFDCAWWPAIRVRLAQENCPLNLRKVMD
SYLTDRKVRVRYAGEEHSVNTSKGCVQGSIGGPVLWNLLLDPLLKSLDTQKVYCQAFADDVVLVFDGDTALEIENRANAA
LEHVQEWGINNKLKFAPQKTKAMVITRRLKYDIPRLNMGGTVIPMSEDIKILGVTVDNKLTFNAHVSNVCRRAIEVYKQL
ARAARASWGLHPEVIKLIYTATIEPIVLYAASVWVSAVAKLGVIKQLAAVQRGIAQKVCKAYRTVSLNSALILAGMLPLD
LRVREAASLYEAKKGQLLPGLADAEIEQMTPFAEMPHPVERADLQIVCLEDQEQVDGNSDYDECIFTDGSKIGGKVGAAL
SIWKGDTETKTRKLALSNYCTVYQAELLALCVATTEVRKSKSKSFGVYSDSMSALQTITNYDSPHPLAVEARQNIKASLL
QGKAVTLHWIKAHAGLKGNERADGLAKEAAENSRKRPDYDRCPISFVKRSLRMTTLEEWNRRYTTGETASVTKLFFPDAL
VAYRIVRKIQPSNILTQIMTGHGGFSEYLCRFKCKESPSCICDPAVKETVPHVLVECPIFAQARHDIEQKLDVKIGLDTL
HEIIIDTNRNQFLKYCIAIIGIVIKRNK
>RTAg4_gag#LINE/R1 1147-3321 (long Q-rich region masked) gi|28569857|dbj|BAC57901.1| gag-like protein [Anopheles gambiae]
MSDEAQPQQVSAPYQLWPRKGSVVVMQPQPIERPATPMMELCYSSDDDELNSTIIAMPEPASECEAAEAAMDLEPPAAAQ
PTPTASPVPGNMVVAGPIDAGSCALLMAQLQNIGAQLTTALEELRLCREENAALRRENELLLTGTRSVLELQTAANATLQ
QSSGQGGNRETARKRQQRLRRRERERQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
QRPQQQRSQQRKPAKPELIEVSPNEGQDWESLLLLVQTAVRTDERYKPLKDHVVLGRRTSKALLRLTLSRKANAQYMLQQ
VPAIVGSAGVCRHVTEMASLVIHDVDPLAREDDLTSLIDSKFESGAGIVSTTMTKMADGTQRAYVRLPAMFVSELDGTKI
KLGFCVSKVRAAPPTPRERVRCYRCLELGHWAHDCRSPDDRQNMCIRCGVVGHMAKVCTSQPKCLKCGGPHTIGHPDCAR
SALQ
>Zaphod2_Api_tp#DNA/hAT-Tip100 ref|XP_001948820.1| PREDICTED: similar to zinc finger, MYM domain containing 1 [Acyrthosiphon pisum]
MNKYFNSNSGTCETSTSTSDARNESINDIDENISKTHVKYNNETSTSTSDARNESINDIDENISKTHVKYNNETSTSTSD
ARNESINDIDENISKTHVKYNNETFTSTSDARNESINDIDENISKTPVKHNNEETLTSPTLTYFPCDDNNIDIDINSSNS
ALANKTVEISDKPVTDVSKSVAFISQPDLFDPNLWPDNRQNNFIDIVIKMGPREINDEIFPKDENNRHFSKIYKIRKLDN
NEKVKRRWLVYSKSIDRVFCFCCKLFNSSHSTLSTIGNNDWKHMTTTLNSHEKSPEHFTAYKKWHECELRFKLGRCIDND
LQRVMNTEVQHWKSILERLISITLYLSKHNQAFRGSSDKLFERNNGNYLGLVELLGKYDNYMKEHLNRITTQKLNITYCS
KDIQNELINLMASKVLENIQQKVQDAKYFSVILDCTPDVSHSEKMSLTIRFVDEKNGNLQVAEHFIGFREVSESTGESLT
ELLLKTLRENKLDIMNCCGQSYDNGANMKGHKKGVQARILALNPKAAFMPCDCHSLNLVISDETSQSKESITLFEIVQRI
FVLFSASVYRWQVLKLHLPNLTVKPLCTTRWESRIDGVKAIRYQTKEVYDALIEVAESSKADAGTRNEASSLGNQLLDFK
VLISLNVWYDLLFQVNIVSKSMQGYADASNSSKEIAESLGIDPIIKEVRVRRKKTFFDENNDQDFSIGAEERFKREFFYT
LVDTVRESIKERFTQFENHKQLWGFLYNLEKLPSSEHLLACCKDLHGALSEGDSADINSVELYSELKHLSSLLPIGEGSP
KSALQFIHDMKLVDVFPYTWISLRILLTIPVTVASGERSFSKLKLIKTYLRSSMTDDRLSSLAILSIENDLAEKVNYEEA
IKQFSELKARKDCLALKNISL
>TRAS6_BM_pol#LINE/R1 1-1909 Fragment [Bombyx mori]
GTVKAAIVVFNNDFKVIQYPKLITKNIMVVGIQTVAWEITLVSFYFEPDSPIEPYLEHLKRIELEIGSIKLLVGGDTNAK
SSWWGSPIIDHRGEDLSGTLEEMGLHILNAGETPTFDCVRGGKRYTSYIDITACSVDLLDLVDGWKIDEGLTSSDHNGIV
FNIRLQRSKGINISRTTRKFNTKKANWPKFHEKLSQLMQENKLTAAEINNINTIEQLEKTINTLTKTIDNTCTISIPIKQ
TKEKLTLPWWSEKLAGMKKEVATRKRRVRNAAPIRRSKVVEEYLKKKEEYEEEAAKAQTDSWKDFCCRQGGEGVWSGIYR
VISRTTTREEDSILVKDGEFLDAKGSAKLLADNFYPEDLRTNDNAYHRQIRSEANIVNVGKQTEYCDPPFTMAELRQASG
SFNPKKAPGMDGFTADICCHTIEANPELFLSLLNKCLELYHFPMAWKVATVVMLRKPGKGDYTTPKAYRPIGLLPILGKI
YEKMLVTRLKFHLLPRMSTRQYGFMPQRGAEDSLYILMQHIRKKLKEKKIIALVSLDIEGAFDSAWWPAIRVRLAEEKCP
VNLRRVIDSYLSNRKVVVKYAGEEYDKGTNKGCVQGSIGGPILWNLLLDPLLKSLENSGEYCQAFADDVVLVFDG
>TRAS4_SC_pol#LINE/R1 1-1920 Fragment [Samia cynthia]
GTVKAAIAIFDERLSIIEHSQLTTHNVAVATLDTGHTKIGIISVYFEDTKPLTPYLDKIKTIIEKLDTKKVIIGGDVNAW
SSWWGSRRENDRGEEITGWITEEGYHVLNQGSIPTFYTIRGGKEYQSCVDITICSDQILSKIRGWTIDQELVNSDHNCIK
FQIITGELKTRTQKKTTRIYKTQKAKWTDFRLTISKKIEANKITTNAIREITETQELDSIIEKYNNIITQACKLNIPKIN
RNTTNKQKNNLPWWTVELEEEKRRVLTMKRRIRCAAQQRKSHVVEEYLKRKEKYELAANEARTNSWREFCTKQKRETMWE
GIYRVIRKAAPQYEDQLLSQNGQNLNPEDSVKLLGATFFPDDCTTDDTVEHTKIRDDAKVTNIEVDDTEDDPPITEAEMI
HAARSFNKKKAPGKDGFTADICFNAIKANSETFLEIINKCMELSWYPTSWKSAFILILRKPNKASYENPRAYRPIGLLPV
LGKIMEKIIVKRIRWHTAPKLNPRQYGFTPQRCTEDSLYDLMTHIMNNLTQRKINIVVSLDIEGAFDSAWWPVLKCRLKE
LKCPRNLRKIVDSYLDNRQVEMNYAGASYSKITTKGCVQGSISGPVFWNIIIDPLIDRLADKNIYCQAFADDVVLVFDG
>LIN6_SM_pol#LINE/R2 4321-5295 (N-terminal fragment) [Schmidtea mediterranea]
WSQHSIKAFIFTHAMKKSSIFVDPISSNSFIQHNFKTFFSTFPFHKFSDWNEIIMPMCKPNGSWFFFFLDKKRKLATLID
PLSENSLLQHSDLASDILNTILNLQNIVLETDIDLSSLEYPRCSINEDSPFFICHFLKCLNSSEPISIPDIPNMTTSIKS
IIINYIRNGFLETDIRKYKNCIDSLIFQMNNTDDTVNCSLIEILKINNNLNPLKYKIKTKSDIIYKNKKREHELECSKRY
KFKYKPKEQLSKILNCNDIITIKPCMNKFINIFANNTSPVSEFSTIQLYNSPENDTNTPTCPEDIKLILKKLKNTAPGLD
KILL
>NP_989053.1_Xtr_eg#DNA/hAT-Tip100 EXAPTED GENE; first 100 AA (containing a THAP DNA-binding domain) may be a from a fused protein. gi|45360759|ref|NP_989053.1| protein-kinase, interferon-inducible double stranded RNA dependent inhibitor,repressor of (P58 repressor) [Xenopus (silurana) tropicalis]
MPNFCAAPNCTRKSTQSDLAFFRFPRDPDRRQRWVENCRRADLEDKTPDQLNKHYRLCAQHFEDSMICRSSPYRTVLREN
AIPTIFDLTSHLNNPGRRRKRIKELTEEEIRMLKERKYDAIVPDQENHKSNNDTEDHQVEVLQIGQGPTLTPEEKENKDY
LKSLFEILILMGKQNIPLEGHNSEVPTGVFIPDSFQALLEYRINSGDDLLRKRFETTAVNLEYCSRTQQRHMLEICESCI
RDEILREVRDANFFSVVMEDAVSLGGEEHMPVFVRFIDETNNLREEFLGFLPCEGDAKALALNFHTTMTEKWGLNMEFCR
GQAYVTSSGLSANMKFVASQLLEMYPQVVHTLSSTCALNIWLAKAIPVAGVSIVLGAMKDLYSFFQKLPQLKVELERTIK
VLFQGNEEKADDYKNVIQTEWISRHDTFEIIVGLLQAFILCLDKITSDNSFKCNTKVTSRAFILSSALSDFDFIVTNVIL
KNALSFTRAFGKNLQGLTSDIFSAANSLTAVLHSLNEVKDNIEVYHEFWFEEATNLAEKLSVQVKLPSRFHTLQLTNLQP
DLTVESFYKDALSVPTIHHIIQGLKDIFSEQHLKALKCLSLVPSVMGQLKFSTSEEHNTDMYKCDLPNPDTLSAELHCWR
VKWKHRGKDVELPSNIYESLHLSDIKFFPNVFALLKVLCILPVIKVDNEKFEVGRKRLKAYLGNTAVEHRSCQLAMLNIN
YDSKQDLDLMVDTYITMYEENRAAAISEMSEGV
>RandI-2#LINE/R2-Dualen 2-6196 [Chlamydomonas]
KNSAPDTFTLHSATTPPTHALLPSIADSTNFDSCIDHLSRNKSPGPDGIPNELLRALPQTLRTTLHNLLTLMWVRAHTPA
SWTASETVLLPKPGDPLLLKNYRPIALANTTYKLWTSLITVAISDISHDLDLFSETQEGFLRYRNTERQTLNLVHALEDA
GLTKQDIYVMYADFSSAFNTISHDRLLEIMWDLGMPHDLIRVVQNLYSNARTYIRSEHGLTAPIYIERGTVQGDTLSPVL
FLVFIEPLIRWLHVGGRGYSYGCLPPHLNARYNCSSAAYADDLAVLTNTLSDLRIQCDKIHRYSEWAGLQVNHAKCRVTG
ILHRRAMQDKGLNGPTCNRTLRSMLENKIHIGTTSIPYLPATEPFKYLGVQVTMTLNWGPQFAYLCKNITDKSLSLQTCQ
ASPEQCLRIIKSCIQSVAAYSFAVMPYTENDIRTLDNMIARLARTCYRLSRGFPTRAVLTPAEMSGLGVGSLLPIYVQKA
TRALTLALNDPGRLGMVTHALLELQTRIAGTTDMHKLRHESHYYTTLKQLSIMRAYNLTLWDHGAPYKGPPNTLLTAISR
SPHPISHHLVLTLTQAGLDLRNLVGKERTPEGRACLIPSDILFQHLPRNQCQHKHRVALNRLSLCLSAECDGAREAPFNQ
AESYKCHLPLPQRYRALPNTPAFAALLPRNATPGELTTQSTMDAHLQHMTALHPNTEAQTPQHPNGLGPRQRQTTLAHML
RTTGAPPTAPTQSPTATLTQTPTGTLPTPPLAQPMPPPLTQPTPPLTTPAGPDAPNTQTPPTVASLTTAHQQPKSKKQRP
NAIKRLQQKIDADPRHDPLPPTDMRSHTEKSGFILNNDPDENDSGPPNFVMWAPHYFANVQKDMQGTNRMPRLGIPRHHS
RFPQNRTRPNPTRTIPAHLADPYFLGSQVDDTNPLNPVTAYISANPPTTPPTCAYDSRPRWADTGDFMIAPEPPNWPNIT
GATPGDSHDPRQADHDPQGQMRAEYMQERERLRAHLDDHPPQPRPFKRWMGIRLQLLTGKLPWPTQAYHVAQAAKQLVYS
LYHDIEEISHIQAGPITKAVTAPEKGASLHTERYYEVAWKDTTIVKGAAEAYTRMKYTGTAAAHMGYGQACHKYFLRMKW
DPTSEPVDKCPTLQGWTPAISEHLRKLAEPPTPTPQPKPKDARLTPAQQQGRWTQADVAASHVRRTTKQNTRIDTNPCNP
YLDVHPTGRYTIQIPDTYTDERTLAHVYNPTGRHIASVTLGTLLTLKARYEHALSTHHDATSPHRSQGGFPEDLAKLLLR
TRVDSKGKTCKSAPARERSLPESLKLALYNCLASTHSDPDRPVGLVERFASPLNCSGRATKYYSQHAADSLFGASHDAYT
APFDGLSLAHPDPDPDACTKALAWATASIEHLEHQATPAITFMIIPQGKGAASRCLASPHVTILALIPPGVSASSMLDGL
GAADEAASSKQGLQLLLIANTTGVQALNSNNNLTRLQTSLAELGAVPPPTSQPPGRRQPLEWPARVTLPRDRTAPPGRPY
SHRAKARAKQLTRPQAPAARGLDTCPTPMPTLSALYTTRAAFPTRSSYLYDAATIVWTDGSCIKVAAGEDGNEMNKLGAC
AWSQQTEHIYVEPGGLNSTNTIQRAELSAILVALEYIRPRLCLLGMTQVTIASDSLVSLYLIRRALTAPQRLLLSKHKNL
LENILHELQMYADAGVPVQLLKVRSHTGLHGNEEADKGAAKVAANDMEAMGQAIRLAPDEPWSNIWWPKRNSDNFYLSDL
NRGVLNSLPPEAQQGFTNNTPVLEQWAEASANMCPTLSNRTLASSTRHPWLVKQILYARYGYLFNAQLKRRYRLGGNGNC
PLCHTPDSGGHILGGCTHPKMKGAYINRHNWAVQRVAKCISKGTYGNGFMVMDAGPLADLPHYASAQRPPAWLAAERTSS
PLITRLRPDILFIPNLPAHETHREGYRPPLNKARLPIYILEIGYSSDVRHLDKREEKSQQHQELKRLLEAAGWTVHYSTN
ECLALGVTGAIPCNLTKLLTSQLGVTHTAARVCGERLHTHAVNSAGGIIKMRRVTEQELKPRGG
>RandI-6#LINE/R2-Dualen 731-13627 [Chlamydomonas]
MLLLTPFASIELTSAPQMHTSPVTLEPASAMRPHAAAGLTQTAAPSHHASLSLATKMKPFHVDFTGDIILRPDLHYLYNA
AGLTVGILHPLPEGNIALWQTQRLRPAAGPIPASVLGLADGKQRILLMTACAGCLNRAMSLSSLLEPAGNYLRVIQQNLL
HTKIDPRLRQLAEAAITKFNEVLSSRGDLVNSIADAAIKAIGMPATNEAINNIRSLIYEARAGSQTWTLSDNQKVAALGS
KRTAFTAGELLLHSACITRHPILILLLTRRHCLAVAITLPVAHAAAFLLDLQTHERWILELGPDNSITPAKRRPTVAILA
GASRSAPNSEGKVSFLAASEGRHDLEKVITCSYTTDQAHSPVYSPLFRHAPNYRLKCSQLLPAYTSTTPPYPQVLPFTAI
MVVQCAARAQDAAGDPNKVVAHMAYEAMDKICAGKPTTPLSTIVEGTKHHSKAPGNYTSTQTYGSSPPIAHALSPNTPLQ
APPTPPPVMPRSTEAMTAKDPGETATANIRDWWGSPLGACVDVRFVKLHDADLLASLGANRNQLYGDVFYAHFSSADVCE
AIQRTGGLYLFSDTAYLRAVCLQSRPDGGAATPEMMDLLEEIGIQIELLDPLLSDTGVNELGARVAQQLEQGMKALFPDI
AQHDHLTNRIGLYTTFGTVQSLTTLDRDNPVEFLFARKGGKLAPIIDLQPAAWQANDRQLFHLSDSRLYLLPCNALSAAA
ILICINGGRNLASTMLWPELNRGRVYLTDAALDYQYKLNTGSADELWEHPCAHLGLAAGLALTGQAGAGMVPDFVGAKPI
HAARAKTAVRHQLQAADAPEPLPMPGLQLNLGESGPVLDAKTVEAAAEDEMEEMDLASLLVSSALGLKPGSTAPAFTAST
TTHPSSTHPHLTDKPTESATPPNCLTPHSSQCRAPSASAEPTPRHNAPPATCRLGRLRSLPHTPGYAGILINASGYSGTH
STAYWDRVAQTRVAQVTEQGNDAGSSKDRRMHDYAVRQARGDVGPDCAVVTMHGTIGTLTVLTHAGLARDTNGVCREVHL
AQINGWTNGPLASRMLLFYVFLLLPIAFRRYGQYARGGPKDDKCVSAAVDSILRAADGRLRPGLLAEDSKANCTRAMRVR
NPPLHIASCSQDNARPSVIRRHHELCLAHATATRRTNSPALTKTRCCPPSPARIRLYFPHASRSAPRPKPPALADARQAV
QGQAKGRGTQCLLFTAGSKPPASSSAPPSSHSGRIYFEQQELSFCWIHAINNLLGAAAVSPHRVLLYLEQLLRQTRGREN
TTEIFALSQAFTPAIGQFSIHAVNHYLMYNCHRANQALALHAHDAVRPGDSPHSVTRRHAQATNGFLIFTPGYSSGIYGH
VLAVKRHGANWIILDSADTQPRTIQHTTTLDMAGTIFTLSTRTPDTPPLLPLCLNGIGPPANWAPDRMGQPSFRALNQLA
NHLTANGHQLLDTCSWGNNCAIFGTLAVLPGSRVPLIPSDPAQWAPMTGAIRACIASRLEHLTAPGTPGSDEMRTHILGL
YEESPHPENTIRTHCRNIRDTSMLTIPDLIALQSLLPGVQIHVISPGYTDWLTLPTPQPNDTRHDVYLAHVPHSWALAGF
PTAFPVTDCNHYIAVTRHTWTPGSVTQDPSPLFHESIWDGGPCTRDIIVTHAKSPTRSPLPKKARTNTITHALLRAMGSP
TNPRKAAKRALSLSPPAPRKTTRATTNCEAKRAPNTRAPANPHTPTATPAVTNISPQQSPPAAPPNPPPRLAVKARQATL
QAFLKAAQAPREDPATQVAPTHTDACHLVTLNARGLLSNLTAIRDELETWDADILILTETKTRAHRTRTERDIIKNSLKA
YTSFVHSTPRPPPLKGQKQDPRRHHPSGGVTLAVHTRYARKEHITCLPTPAQLQGYMVHLRIATHSSLPLHIIGIYCPPD
NKSTRDALYTYITRATKSAARLKEPLLTGGDWNAAAYDTDRSTRTGTQGDKTHQTFLTRTSLKPAAGAHTQPRLYTYTQI
QHDTITHESRIDDFLANTHALRQDSPAREWTTECAGTTDHLALHLQTTLPYKPPRDASPHTEREPRRQPDDASPTLANIV
KPITQSQSRAISQQWEAEGTTALVTLHATLALPNCSAQQIIDSTVAAISHHTNSTASTRTAHDIITGARAQLSAIDLNAA
STALYGALAVGAKLMLQTCPQKPPRTSRAKPSRTEAKKLKRLIAVEKQKKQQYLALVRAAQLQEPAIPPPTAPNPSQPEP
PATPAPATAARQEWQDALKTRRTTQKETSAKAASKWLTKISKLFATSQSKAAKIMLGKSGPRQNLTAVRHPATQHIATTS
SDINDALHAHFQAAAEPTGGQRTGRYRPEDKDTTFPWNEPGAPDGGFLLARTAHPDAQSLLPNVADSSNFQRCMQALSRN
KSPGPDGIPNELLKCMPEALQSAVHTLMCVAWIKAELPAGWSTSDTILLYKKADPLSISNYRPIALCNTLYKLYTSLVTR
AATEACTDLLIHSEAQEGFQKHKGTERQIMNLLHVIEDAALTKRDLYVAYIDFSNAFGTIDHDRLLTIMHHLGLPTDFIE
VVRNLYSSANTTIRTTHGRTNPVHIRRGTMQGDTLSPLLFIIFLEPLLRWLHYGGRGYRYGCLTNSENDEHNCSSLGYAD
DLTVAANSRDNLRCQTDKIARYAAWGGMRINRDKSACTGILHHYASANSTDKSIKGPACDRTLKRLLAGHIHVGTCTKDG
KRSAITLPYIPPHKPYRYLGVEITMTHPQLKAVKADLTDAGVELSRYRKLPRQCYMLIKQCLKAKVAYSLPTMAYTQPDI
RALDAQIAGIARRCVGLPRDCATRAILLPAELGGLGIGSLREEYVQRASRLLVISLNDTGRLGVVTRRLLHLQAAHAGSD
LPLHDMKRAGQFFVTLKQLTLLQDHDLLAMLQGKEFTAALPALVSKLRAAEATTPAYLRADWISPLTIDLGLNLADLVDA
NTGRHIIDTTQLDRRFPKGRVKDKHKRALNRFTVALCKPAEAPPKSMGHKPLPMQSRTLPAGVSKADLNSAGDLPKPIPQ
RTLTSLLARWQEALPSPAAPPKPSLEVLQAKPKQTAKQRHSHFIKHDTRTRNPEVEANDDALPGSTVHDPSDPTKDLAFY
MSAAREFAPLAQQCKTLGTTRWTGTWRSPIRQMPARALITGPHTHTVHALLHTRPYQQPAAPTYQRLYLPDGCPATTPPP
APAHSHNRRKRGSQPTRCPYTHHAIQPRAPTRAAAPRRDSAAAQPSSRPAWRKVRDNALNGRLPQSIAGVQAAQHITAHL
TNRDDIIAAVVSGPMTHKTNAPPPKRKRKQGPPPEEPPWAERCRYRVRWQPTLTTNGILRAYELQNYNATSTTKPPCRLW
GQGIRRFMVQVHWAETEDPLSSLSENPGWAAALARYTLAQAVDAPPDPTPPPALDNHLTSKQRQGRWRDPAPSEAARKRA
ILRCSTIDVKSCNPDTDIHPTGQYCIQMGTREPGSATGTPSGPPQDPDPPARVYGPDGRCIGTVSAARLALLHARYRTLN
PTHPPERFAAALASLIIRYRPSKRHKESSTNPAHEVTLCPDLMSTLTSHIKFQTEAFASPLNAHCDIPAYYTTHPQDSEF
GAAHDCYSRTLDGISFVHPPPQPEHTSLAMAWAVASAEAATPHTPHLSVVVVPYGDTSGYTAWLQHPLVHDLGHIKPAHT
WAAMASGLGQPQELPAHRRGLHLLCVTNERGRLLLNQALESGLALALADALGHTPHLATRKPPTDPDTPNPWPPTPRKLK
RRILAQSSQTPQPQPPRDAPTLPSPTELATLYRAYVPLAHTRGSAVFTDGSKVPHTREYTGLGAAVWDASDNRATHIDED
IAFNTPLSTILRCESSAIRTALRLHRDTPHLRVYTDSLVSLFILRRAIMEPESLHVSKHREMFGTIVDQLAERALAGHKT
SFYHVRSHQTDTCVGNQKADEAAQAVATRTVQPDATETLYSHPYEPLEGWIAQKEIVEHNGNLEERLRYANDLNRDLKKM
ARKSTATGYTKSGLYAELWEAARKHIDERYGLNLFDKFSFEEARCAFKYRWGLSWNAKRAARVKHPMPGCAGGECPLCRG
DDGGTHTLGGCTHPRMKAAYIARHNRAVQRIAKAISQGHYGGCVMYMDAGKDAPTYSGGTRIPAWMLPSTPESVRKKLRP
DLLVIPTLRMHRSGLPARAPRTRRQRSAHKVYVIEVGYCSDLNHPDKRAEKLQQHEDLVAALRDAGWDVMYSPDTVISLG
HTGTVTPHLHALLKTLGCPTQSAHSTCRKLVQHAVHTTTAITALRREIYSHKWPGRPP
>NeSL-1_TV#LINE/R2-NeSL 20-5683  [Trichomonas vaginalis]
MIPVLGTGGPEKLPLQSYVYCGNTAITDSFTPTAKTILKPEEQNLDIVLKNIAALNPENYSDLIRSLSKMEFRLDYPKEI
ENYWISEKLFSQSIASLPISLLVASMFSPEDRDLSTEPFHCNADGCNFHCDNCERMVEHIREHHNTDPMINTFETTEDTF
RRITAIKIDKTGIEELNPLKYRCSYCDELFTEAEDHAIHMISHLTEKLSPDISFFFNDILRLYKTIDKPTVQNLFPETQV
AIFDTLEETNRFRLIVGREAIETIEEAFPPSPPGTDRKPSIIITDTCQLRFVPCMDEPPKGDLGILTLLLRDFSAHNIPI
KSLNNKELIADKDIDYSPDFVEGALANAEEHDTTNSQNNNGRYINSAEKLTEFLIQCEDYLTNIKTLEDLERFYTTIKDY
RVNKEVIAEDTPIFVYFLVEEGKLPKPGLRCPLESYEGHEDKAFESLRKLCDHFKGEIAKTSFDPKVHTIDIWVEFLAQA
YGTGTFVYKDENGNIDLDTHVFKCPYADCSYTNNDRSKLMDHMKTKKHAKNVYIERYGFFWGIVIEGVNRPKGIVYPTLK
DIKEHACRKCPEAGCNTYVTELSDIKEHLKKKHKSTTAGVDGEIAHTDATYCWITKEELDALHAERARERAEQVDNTPVQ
QIINADNNEENNENQEDNGNNEEADALDPPNNTTETEDEAVHAVIINPPATEEEEVAIIAEARRNIPELQQAEERGCVTP
KMTSLVRLKLLKGGGELFNKKLTPLATRYAATGNTEADKIKVDYLTLKCNAALREMIYTNNHSESKFMTAENGEDTAPPP
RISEDTRDRIQKAANEIKGTLIKVVKHISHARCLKDSTRDDEHNKFVEMIAKIKNDLRDNKFEQYNIEEIFQGPISDQSI
LNIVNTEDNNEFIKKMDYINRILGTPQDASPYARKKLQACFADNPTKTLRNIILADKVPQQSLKPSEYLDYYGPQWANEA
EGYENFLHHDYALPERYGQVFANDFLDFMTNESKIIEVIRNKNHLSAHGLDGIPNSVYMLFPVSAAKFLSILFRSIIISG
HIPDCWKLSKTVMLFKKDDPSLAKNWRPIGITSCTYRIFMTLVNKALQMIPMFHAMQKGFVRGATLSEHIAVANEVLCQS
TRTQSEMFQTAIDFTNAFGTVPHQLIFDSLEAKKVPDSIINLLKDLYKGARTAIYTRHAHSEIVPVRRGVIQGCPLSPIL
FNCCLDPLLYAVQRRHFEDGYRFQDKAGQYSIAIQAYADDVLVISPTHEGMQRILNTVDEFQKIAKLKVAPQKCVTLAKT
STAIQPFRIGPDEIPIKTSMDNITYLGIPISGTKTSRFAAATGILEKVKAQIRVVFASHLALSQKIIALRVFILPQLDFY
MFHNVFRVNDLKATDQMIRGLIDKEAPTSNIPVSFFYMPKNKGGFGLVKLELRQPQLVLTKFARLWLSQQAETKAFFHTM
AQEEKSFRKVVEDQENGFLGIKMENGKIVQKNERSKRTNCFITQAAKAADKLEVRFKEWDKGGIQVRGVGENATDWYRSK
HIGQISPLIGRVIQQRQYEEFKKDETHSHTFCEPAALAESHDIMKRPQAVPNNLYSAAIALRTNTAPTPANMHFHNPEVL
ANCPLCGCQSCTLFHTLNMCRNRFSLYKWRHNIICDDIYQFIHDHYPGVTIKCSARITSDGYQTTGPELDDTVKDLLPDL
VVYDEANKMIKIIEVTCPYGTDNNVGNSLDAAYDKKVNKYKSLAEQTERLFNWTTTLSIIVVSSLGVIPLRTKLDALRIS
PADHIQLLKRLSMHAIAASACIVFEKVPEFFGMRCRPLPGRVTAPNAAIPPNNNENNNDTDHGQENQQATSEEQPTNNGN
AQEDNGQGEQINNSTEQTISVDQIIEEDAENNAIEQALDQPDEDEFLN
>HERO-1_BF_pol#LINE/R2-Hero 2-3070 [Branchiostoma floridae]
PVSQQEVVAGATPSPQEPAPGRKEKIKWPRANNKEEWEKLDDDLHQILEQGLKGDVERKLNQFGNLVYSYCSERFGTYKK
EGKEAREKQTSRREREIAILVRRRRQLRKRWRKAKQEEKEGLEPLWEEIKSKLKSLRRAERLRRKRKRKAKERNQFFKNP
YKFARNLLEEKKGGSLQISREDLELHLKQTYSDPQRDEELGSPGYVPRPTEPEIPFDVSLPRWSELETAVKKARAGSAPG
PNGVSYQIYKKCPKVVRLLWKLFRVAWKKQCIPSAWRRAGGVLIPKEKVSTDIKQFRNISLLNVEGKLFFSILTKRRITY
LLANNYIDTEVQKAGVPGFPGCIEHASTIWQQIQMARRQKEDLHVVWLDLTNAYGAVPHSVIHYALNFFWVPETIRTMIQ
NYFQDFRVSVTTPQFTTGWQQLEKGIAMGCTISPLLFVLGFEIFLIGARQVAGGIKLPSGQRLPPLRAIMDDVTSILRSA
PCTRRVLQRLEELTDWARMRFKPSKSRSLSLRKGKSSNRVFSINNQDIPTIQQEPVKSLGRLYTSDIADTKRGQELVKQA
VEGLRAIDKCELPGKLKVWCLQSVLIPRLKWPMKMYDIPLSTADQVEGKANSFVRKWLGVPRCLSRTALAGRNKLTLPIT
STSITEEYKLEKVRTALELKWSQDNAVRAAYRGQKTGRKWNPDGVIDQAVSRLKHRDIVGAVQQGRCGLGWGERTLRWDK
ATQRGKKQLVVDEVKRMMEEERKVKVVGQHQQGAWINWESTVDRKLTWKNMWDKPDHRLSFLIRAAYDILPCPRNLSRWY
SKEESCELCGANKANLKHILSACTTSLKQGRYTWRHNQALRILAAALEEGRKRVSSNRVQNQSFIPFVKEGQKAAPANRS
RGEGLMSKGGWEMTVDLDTRLTFPRTICETTLRPDIVLWSPTQRTVVIVELTVPWEENVQAAFERKKLKYQDLVQQCVEN
SWRALLYPVEVGCRGFVGTSITRLCRELSLSHKQLVKALSEEVERCSFWLWVKRKDQKWGTKE
>R2E_NLo_pol#LINE/R2 3-1433 Fragment [Nasonia longicornis]
KFSXVDSRSQSXRRRXYLXKCGLXVNAXKCMTVSMLTVPREKKTVIDPKMKFRCLGRTLPAVSRSSEWKYLGIPFTPEGK
WTGNPLQSLMTSTEILTKAPLRPQQRLFGLRCVVIPSLYHLLVLGSANISLLRKMDKRIRTIVKKWLDLPNDTPSAYFHA
AVQHGGLGIPSLRWMVPVQRLKRLKNLPYYRPDQPEYYHLSKEIKTTLNRLKDKNVQLVTRLDVDKRMAELLYKAVDGSA
LKGSNAVPSQHQWVREGTNFLKGTDFIGLCKLRINALPLRCRTARGRPKERLCRAGCHNQETLNHVLQHCPRTHEMRIKR
HDAVVNYIAKSLNEQGFEVDCEPHIQGPAGLRKPDIVVKKEDAAIVVDGIIAAEQADXKRVHNEKRKKYXDLKPIIKEKY
GVEKVEFTXATLXARGLWSSDXAXDLXRFSVIKSKDLKVISTRVLVGGMAIFHDFNRRTSRSXGRRRGQEPPRQGEG
>R2Cs-D_pol#LINE/R2 gi|34392531|dbj|BAC82593.1| reverse transcriptase [Ciona savignyi]
GLKVQPSKCHSLGISHTRGKTSVTRVRVNPFLNIDGTDLPVVPPGSWIKFLGIMIGPHGSCRLQRNTISEALKRLMGAKL
KPQQKIYMLKNHLIPRWRYSLSISEQTQQTLYWVDREVRRTVKKILHAPGCLSDNFIHLDSRNGGLGICSMTEWTYVAKM
RLRSRLADSLDPAISVLAPTIYSRTHAVIGARLKRMLGEEPTIKSLQQHRKKTLSEQVQGYGSEHFNNSYSNSWLSGSTR
LISGRNYVQACALRTQTLPTREAVSRGRSGTNNICRNCGLEEETLSHILQNCHRTNKIRIHRHNAVLQILTQHLCRRNWR
IQEEPLIPTPGGNVIKPDVLATDPEGNLYVIDAACPYEGGGDSLSRAAAAKVEKYSAYETSIRRYIGRTPRKTIFVGFVV
GARGAMPPQTQEFCKQVGLGKGKLHLMSVRAIEGSLKIFRLFMAL
>R2Ol-A_pol#LINE/R2 1-3285 [Oryzias latipes]
NCPLCGVPSGGLRLLGKHFAVRHAGVPVTYECRKCAWRSPNSHSISCHVPKCRGRARVPSGDPGIACDLCEARFATEVGV
AQHKRHVHPVEWNKVRLERRGARGGGIKATKLWSVAEVETLIRLIREHGDSGATYQLIADELGRGKTAEQVRSKKRLLRI
DTASNSPDDAEVEEERLESLAVRSSSRSPPSLVATRVREAVARGESEGGEEIRAIAALIRDVDQNPCLIETSASDIISKL
GRRVDGPKRPRPVVREQTQEKGWVRRLARRKREYREAQYLYSRDQARLAAQILDGAASQECALPVDQVYGAFREKWETVG
QFHGLGEFRTGARADNWEFYSPILAAEVKENLMRMANGTAPGPDRISKKALLDWDPRGEQLARLYTTWLIGGVIPRVFKE
CRTKLLPKSSDPVELQDIGGWRPVTIGSMVTRLFSRILTMRLTRACPINPRQRGFLASSSGCAENLLIFDEIVRRSRRDG
GPLAVVFVDFARAFDSISHEHILCVLEEGGLDRHVIGLIRNSYVDCVTRVGCVEGMTPPIQMKVGVKQGDPMSPLLFNLA
MDPLIHKLETAGTGLKWGDLSIATLAFADDLVLVSDSEEGMGRSLGILEKFCQLTGLRVQPRKCHGFFMDKGVVNGCGTW
EICGSPIHMIPPGESVRYLGVQVGPGRGVMEPDLIPTVHTWIERITEAPLKPSQRMRVLNSFALPRIIYQADLRKVTVTK
LAQIDGIVRKAVKKWLHLSPSTCNGLLYSRNRDGGLGLLKLERLIPSVRTKRIYRMSRSPDIWTRRMTSHSVSKSDWEML
WVQAGGERGSAPVMGAVETAPTDVERSPDYPDWRREENLAWSALRVQGVGADQFRGDRTSSSWIAEPASVGFAQRHWLAA
LALRAGVYPTREFLARGKEKSGAACRRCPARLESCSHILGQCPFVQANRIARHNKVCVLLATEAERFGWTVIREFRLEDA
AGGLKIPDLVCKKADTVLIVDVTVRYEMDGETLKRAASEKVEHYLPVGQQITDKVRGRCFKVMGFPVGARGKWPASNNTV
LAELGVPAGRMRTFARLVSRRTLLYSLDILRDFMREPAGRGTRVALIPAATGAAN
>R9Av_pol#LINE/R2 570-3875 [Adineta vaga]
MNLPIREHAVSVHNINKFNYLCQLCSKSYDTINSVKAHYVACRRQKNASSTTAVPTNVINNNQLAINTNQVISRNPLQCV
ECLMKQVDFYAKDTKALVTHMRTKHAAAYEESKKVATRRVAWSPDEDQILAELEVKLKKIQKGQLLSRLVVEYNKCADKS
KAPSRSKDAIRTRRQQHDYKLLLRSLQSQQPPVGSEDSDSDISSSNNNPLTTTHNVTPTPDSSNVVLLIQKIRESVDSIV
KITNLKLNTNMLNAASAFINQNNNMDPLELSMRGIEEDVKAIRDKELQKPTRNVPSSTTSRKPTRNAKRLEKSKKYGYYQ
HLYYNNKKKLVAEILDGETSGAKPPPMNLVEDYYRNIWSRSTIDDSPVNNIKTVNSDSIFAPISRDEIKLALSNTKKDSA
AGPDAVTIKEAKAIIDNLYVAYNIWLGVQGIPEQLKLNKTILIPKGNSDLSLLKNWRPITISSIILRVYNRLLAYRMNKI
FKTNDKQVGFKPVNGCGINISWLHSLLKHARLNKNSIYACLVDVSKAFDSVSHQSIVRALTMNGAPSLLVKLIMDQYTNV
NTVITCSGSISNKINISSGVKQGDPLSSLLFNLVIDELFDVIKDQYGYTIDNIGTTNARCFADDLTLISSSRMGMNKLLE
LTTKFFKERGLNVNPSKCMSIGMSKGYKGKKSKIESEPLFSITDAQIPMLGYIDKTTRYLGVNFTSIGAIDAKRIKKDLQ
DTLDKLEHLKLKAQCKMDLLRTYMIPRFMFQLIHTELYPKLLIKMDILIRKLAKRILHLPISTSSEFFYLPFKEGGLQLT
SLKEAVGLAKIKLHKKIMSSNDPMLCYLIESQRSRIVEHFMKDLKLGDSLTLNEMNNIKECFMKEKRISFAQKIHGVGFE
VFSSSPLTNQWINGEIKTMTTKTYINSIKLRTNTLETRVTTSRGLNIIKTCRRCHVADESLMHVLQCCSSTKGLRYSRHH
KICAKVANKLVMNGYGVFREKSYPDPNNSGSYLRPDIIAVKNGHVIVLDVTVVYEVTGATFINAYQTKINKYNAIMVQIE
QMFNCVNGELHGLVIGSRGSIHHSQLHIWHQMGFSSIELKYVAIGCMEDSLRIMSTFSKAIT
>R8Hm-B_pol#LINE/R2 266-3739 [Hydra magnipapillata]
MSNRITIGDVPSVGKGGLTVNKQTAGADGAEACVVIHPGAKGIWSSPACLRKFTIGKELRAHLAQIHKLAPSAVRYRCNK
CPYEGDVQLSVGTHLRYCKGIAGVVEEKKQFACAICNFSSDTFSGLQVHKQRKHVVEWNEQLKEKTEFAWTDRELRELAV
KEVTIPFSVVNTETFAVLDITTRTKDAVRKIRYTDRYKSILAEVRAQVNAVAEEAPQASDESQITLLVNTGRGAELQPAV
INITDSIELVTDVNEVEMVTSNSTNEEQPINAPVEPAVIEADLGRQDAKLYLASLRQSDCTNASDRWTLAYCRGEVDWCK
TKSRLFKVSRHARGLRQPQRVENWEFPEGFRPNRNLRKWRKYSFLQSCYRTKKKETVSKILDGTFKDTPEEEIRPELEEV
QRVYVDRLEVRTQLDTTRTVHIDERFDLVSYGRITIREVQDAISASKKDASGGPDGLLLQDVKKASPRQLCIIFNMWYLH
GIPVVENRCRTILLHKGGEKHLTSNYRPVTIGNMLNRVYAKIWDRRIRKNLQLHVRQKAFVPLDGCFENVKTIQCILQSY
RRSRREHNVVFVDLAKAFDTILHDSIEKALLRKGIPRSVIKVVDSLYAGAVTSITVGKTKTRPICINSGVKQGCPLSPLL
FNLVIDELAERLEATGCGLDLEGHVISSMAFADDYVLLAKDSVEMNVLMNVCNTFFEEKGLAVNPAKCQSLRVLPVKGKR
SMKVLTRTHRWWKINNQDVEIPSMTYESVGKYLGVMIDPAGKIALPIEEWKLWLTRLRECKLKPDQKVKVLKEVVCARAN
YVLRMSGCGICELRKWSRFVRGWVKSIIHFPAWCNSEWMHSSKGLGIPDVVSGIVIQRMRAAEKMAKSTDGVVRVVGARI
VQTNRVLWKRAGLAGIELDAARKFCEVKRVNKIGNQTNGGALKTIAESSVSRHWLLEKNIRPGNKILVWKAMAGVIPTKI
NLSRGVADQTLKKCRCCGLTAETDCHILAGCPTSRDAYSKRHNLLCDKLAKELRLNGGPSRRVWRERMCLSGNGRRYKPD
IVVKDDGVITVIDMACPYEKSERHLSQCEDAKVAKYEPLRLDRSWTQELEGNNGRSANEISVVGIAVGAIGTITRKTQRI
LSKLKLAKVGRPLQIIACNESAQIIRRHLSGSRLRNLR
>R1-4_DWi_pol#LINE/R1 1928-4897  [Drosophila willistoni]
MRFIQINLNHCEAAQDLLSQTVRELGTDVAIISEPYKNFTTTTWAQNNSGKAAIWACGTTPCQIKFPASFNGFVRAKIRE
YWIFSCYLPPSYSLGEFCGVIEELSDQIRCHKPAIVAGDFNAWAAEWGSSSTNARGQALLEAFASIDLALLNTGNGFTFQ
RGNIGSIIDLTFVTSALCTHARWVLSPHYTASDHNAIICTIDNQRRSERQITRPQIFNSKMLDVQVFTRTLEQHNIEAYT
ADELNAWLTDACNACMPRKNACPKNHRPAYWWNEEIAKLRKLCHRSRRRSQRTRGSEDSESYRLEFEAKRRELKMAIRRS
KKACFDALLTEAANYVWGRPYKIVMKRLKSFQRIEPPSSIEMDAIVRELFPTQAPSNFVTVNYDVAGIPPVTSQEILTAV
GRIKINSSPGPDCIPNEALKIAAFQHPEKFAFAFTKCLNDGIFPDLYKQQNLVLLPKPGKQMGEPSAYRPICLLDSTGKL
LERIVVDRLDQALQANQAISENQFGFRKGRSTLDAIRKVVKIARNATAGDRWKGGSKEYCLIATLDVKNAFNSARWSCIL
EALHNYRVPPYLLKVVSSYLNNRWLHVDTYDGGKDYSITGGVPQGSVMGPLLWNAMYNGVLNLNMPKGVETIGFADDIAL
VCVAKHLNEVEAVCSNAIFRVQQWLASMGLHLAEHKTEAVLVSSRKKVEIATIQAGTAQITSKSSIKYLGILIDSRLTFK
DHLNESAKKARATGAALSRLMCNTKGPTQSRRLLLHGVTKAIMLYGAPVWAEAMATKSYARDMESVYRLSALRVCSGFRT
ISGIAAMVLAGTIPIRLLADETKQLFSKLKDPRITQIERAAIRKRERSISISRWQALWDESEKGRWTHRLIPNLETWLNR
RHGEVNFNLTQLLSGHGCFRSYLYRFRHAASPACPWCNNGEEETAEHILFSCGRFDTHRRNLQVVLGVQASATNLVPLII
LRKANWDAFNKFAAVTMAELRSEEQLANRT
>Kolobok-1_AA#DNA/Kolobok 910-5813 via genscan, 6 introns (1478:2634, 2934:2995, 4046:4101, 4428:4481, 4879:5113, 5415:5475) Closer to Hydra group, but very distinct [Aedes aegypti]
MPRKTKAQIAAIKREAQKKQANCSANDDCNSEEVTEEDYQREDWDSEDTSDGCGHRVELLPATESEFVSDFWEYCSVCST
VSDSGSELSAYASDEDSDIAEINSMRKPCELSHCEDVWPSFNEDTASFLRDLSIPSTAFDDSVNWSYDDAFAPCSPSAEL
HDSRQADSLGETGSVPNTIPRTPNLSNGTDTPESKSHSQIEAQSNEPKTCETENKAYFTESILELKHRELEKYPIQLIPS
VVEHRSGIIYIDECYVFSIRFTFLERVFTQAEAENMSHFTEDCIADKRTVIPQESNIQSMHLAKKRKTDKAFDVNSSLSS
LPTNDEILKTKVMAVDTHQYCEEKNDNWNDIEGRRIVEFNYVMKCIVRAQAHHSKICNGVLCLDQEYYQSMISTMWFKCD
SCETMFKIRTEEPSQRPKLRKSIVWGTLCSGGTYTQTKQLLSFCDVPFMPVKTFSLDEMEMDTTLQEAVDESTDKAIEVE
KATYFEEHKVNDQNSSPDQIAKIKASLDGSWATRSYGARYSSASGCGVIVGEKTGKIIYVGCRNKRCSVCTRNSRLGNVK
GPHKCYRNYVGSSGGMEPDIMIKGFEELERKGVWITTLITDGDSTTVARIKNSIKYGPSIEHQLCCNHICKNMGKKLRDI
KCPKDVAALVSANIARITRGVRAAIVHCAEATGGSDVEGLRHDIRNVPAHVFNDHRKCRDYFCSQLTNENEWHIDLLQKY
GVLSKIQGVVETVAAKAEFLNHNKTSNTSENVFCRLCKYNAGKRLNFTSRGSYQRRVIITTLQHNEGYTWHSTSMKKFIG
SDPPKLIFKFAEEQERLKAATLVSKKRPDFNRKPINISEIERDYGETAVAVASREIDVEEEIPAAKQKYIARISGLYFTQ
MTAQSNEKLRNNVSLPEMEEYAKGRILPKFVAEVVGSTKKTLQQKCDNILLTTNTWNFIKQNRSIIGPITEAINGKFGYK
ISGSKMFVDNCHNYICCIPDGVSDDGETIMIVKKKAIKGPLKENAAKLGCKLIENDIKLDRKTYCEVQVSLHVCEAAKAV
VCFVNSNNIDDYLVKECALDATFFEEKVEEHIKDFFENILIQKIIENEVFVKS
>R1-6_DK_gag#LINE/R1 1418-2563  [Drosophila kikkawai]
MGTILEDLLMKVNEQKVRSINQGMKNAFARLKELQEALMRHPEVRXPLSRIEDTVDRGCQTAQVCTPRSDKAAQTSPSRR
VRPVKZGPGSDPKRPKARSAQPSNPRRMAEGNDGGDGKSPTEQPRRVRTGAGRRERPRRRGKDALIISPPPEMSYSEVLG
LVTRANDARMEEVSDSVSRVRKTAKGELLLEIKRNSZAQTSGIRDLIGKALGAGATIRTMTPQVSFRIWDLDELTTKEEL
EDALVKQANLPPNSVTVKGLRALATGSQXATFTVPAGFAGALNNLGKVKVGWTRCRIKELEPQLKCFRCLDTGHTASRCR
SPVDRSKACFKCGKEGHKVAECQNPANCFKCEQLKRKDTRHQAGSRSCPLVASSREGHKHRA
>R1-8_DWi_pol#LINE/R1 2004-4981 via tfasty with LINER1-2_NVi_pol, 1 frameshift. [Drosophila willistoni]
MKLLQLNLNHCAAAHDLLAQSVRELNIDVAILSEPYRTRPGSSWATDSSGKAAIWLCGNRTPPMQHIYAHRGFVRAYIGD
IWVYSCYLAPSLTPQEFESAMDQLALDARGKGKTIVAGDFNSWSKEWGSARTNSRGRTTLESLASLELVVLNTGNRHTFC
RAGYGSVIDVTFASRQIAAQTNWQLCSHYTASDHLAILCTIGSRPAENATTDQNAKMFRVDTLNITTFEESLRIPPFTGD
ANKFAKTLVDAVLAACDASMAARRCHSKQKAPVYWWNASISEARRRCLQCRRQYQRARGMPEFFSLQAQYKLRRRELKLA
IKESKRKCFLEMCNAAENDIWGAAYKVAMKKLNANKPATPNESQMKLIVETLFPNTSAISPRPTRIANTRDVRDISPEEI
LAVAARLQDQKAPGPDAIPNKALKLAARLQPEKFAEVFNKCMHDGIFPDSWKLQNLVLLPKPNKPAEDPSAYRPICLLDS
VSKLFEKLLAQRVESAIKNSGDLSPMQFGFRRAKSTIDALQTVVDIASNAIEGQRWKGGKKEYCLVTTLDVRNAFNTANW
SRILSSLREFRVPEYLVLMVEDYFRNRILRYNTQSGWRTHVVKGGVPQGSVLGPILWNVMYDGVLRLSLPPGTQIVGFAD
DVAIVVVAKHLHETESKTAVAVDIVKGWLNNVGLQLAVQKTEAVLISSRKVVEVAEISLDTCKITSSRAIRYLGILLDTR
LSFKEHLEHANTKAAEVGRCITRFLLNSRGPSQRQRVLLVNVVRSIMLYGAPIWATAMRQKSYRQGLESTYRLGAIRVCR
GFRTMSDEAALVIAGLTPIDLLAKESQYIYNKRQTSEWTPLAKQEAKRAARRASLEDWQARWTSSTKGRWTFRLIPNLEP
WLSRSHGEVTFELTQLLSGHGCFNAYLHRFGHESSPECMLCQNGVVEDAEHVLFCCPRFQSERHELEEAFGELPTVENTA
NIMCASQGKWSAACTFAKKVMDALRRLERQRNA
>R1-6_DWi_pol#LINE/R1 1825-4752 [Drosophila willistoni]
IKFLQLNLNHCRSAQDLLKQTVRDLKVDFSILCEPYSHIQDHSWTQNHRYGAAIWSNSRTHLENQHSADGYVRARYNGVY
VYSCYIAPSKHIDEFCSILDGLVEDARTHTPTIIAGDFNAWATEWGSQRTTRRGRALLDAFATLNISLLNVGNTHTYNKA
GRGSVIDLTFASPCLARSAQWAVSDIYTHSDHFAIVCSIKSCPPAHTPTTFYSWAPSTLSEEALFTMMTQVTRSSSTDAD
TQANHMGDILRRACDAAMIRKRHGLNKCKPVHWWNARIADARRQCHQARRRQQRARRMPTFPELLADYKRKRANLNMEIK
RSKADCWKKLCADADAQPHGTAYKLVMGKLARRIMPTDPTKLGHIVATLFPSRPTRNLAASGTPCAPIFTDVGEVVEAGK
RINVHKAPGPDGVPALVIKLLVCKHASTFVELFNTCMLQREFPTRWKLQRLVLLPKGDKIDDPSAYRPLCMLDVIGKLFE
RIICNRLEKELEQRHGLSDWQFGFRRKRSTINAISSVVEIAAKAIEGQRWKGGNKKYCLISTLDVRNAFNSASWDSIIAS
LERLNISEYIINLICSYFRDRVLLYDTAAGPRKHTITGGVPQGSVIGPTLWNVMYDTVLRLDMPTDTRIVGFADDIAIVT
VAKDIQQAEENTNAAVFRILEWMEANSLSIAAHKTEAVLISSRKKVETARIEVAGCSITSKPAIKYLGVMMDHRLTFKAH
LQYTADKAAKATSAITRLMANVGGPKQRSRWLISTVVRSIILYAAAIWAPAMSSPTYSRDCRSSYRTCALRTICAFRTVS
EDAALVLSDMAPLDLLANEARNRDPPPVRRETTLTNWQRRWRDSNHGSWTRRLLPDIRPWLNRKHGQTDFYLTQLLTGHG
CFKSYLHRFKHETDPFCTHCAGNIEDAEHVLFVCPRYSAEREELSLGIGRPFIVNDFMDILLSSQNNWLAVSHMAAVIMQ
SLRRAERQRNQNFSSR
>R1-3_DAn_gag#LINE/R1 249-1655  [Drosophila ananassae]
MEEKNITTPGGTHNCGNPPAETPAARARILEALSYIPNKTAPPAAHLAGVPDTATSETLEEHQAFRRGSKMKRTPPKQMA
SDHTPKRHRDQLSPPCSSQPEKKTKTPQTPIVEMGAILDDLLAKVNDHKVRSINQTMKNSFARLKELQELLRDRILTAQN
QEERPRCGCSRDEPGCYSPRVEVATQTTPERASFSKVARTKRPAEIPPPLSAKIAGKKDAKLSQTRKSRPDALIITGKAG
YTYGDVLKLVTRRQDDKLEQVSQSVRRIRRTAKGDLLLELAVAKEANALSLRQTLSQVLGETASVRAATEETTLEIRDLD
DLTTKDEIVAAFAARLSGQEETIRVKSLRPGYSGTQVAIVGAGSNLASKILLEGRIRIGWTRCRVRERTAQRRCYKCLGF
GHIAAFCKERTDRSDWCLRCGNPGHKVASCSKEAKCFLCAAANKAELAHVAGSRRCPLGKPEVKEQRRA
>R1-3_AP_gag#LINE/R1 787-2142  [Acyrthosiphon pisum]
MEDMEDTQEPGSPVQGTSHQPPRSPMSSGESPEQKKKKGSPDPVPLARESIGWIRYSLETAATKKSNVPVETQRSMFDKL
KTLDSAIHDMVIMNLQLASQLEESRRSAEICVGAAAAQFGTKLWLREVAHEQTLEAVVARYAEREALRLHELEKRGPPPE
QVAMQEVPAETFAQVTRAARPAKTTAGRKPDRSVSRAANRNKALKEAKLTEHIPAYIIKSCGGKDPKEVRSVVWSKVASQ
NIQPKCHSIIAKDGRVIIKPMNRETADILKSLSKSSSLIVEDSPRWPRVMFRGVQTDIRSEDLQSSIVSQNAHLNIDEDT
TDEILRPIFKQGKRDMDTTNWVMEVNPRYYDRFEDAIVYIGFMRCKVAAYEEVTQCHVCLKYGHPASKCQEKEPRSTHCS
RAGHKAADCPAAEGDPTCANCRGKHNARDKTCSARTAFLLGRAKRTDYGVTQ
>R1-3_DBp_pol#LINE/R1 1585-4569  [Drosophila bipectinata]
MQVIQLNLNHCRAAQDLLRHTVGEVNADIAILSEPYSVGPGEEWATNNQGKAAIWICNSSAEGPSQVRRGEGFVRIQWGG
TWVYSCYLAPSLSLDAYCKALEELAVDARGKHPVLIAGDFNAWAQEWGSTTTNARGRALLEILAPLDLALLNEGNQETFN
RAGAGSIIDLTFVSSSLARTSEWRIADIYTASDHEAILCSLGTSRATSXIPPCGKAXRQDTLDVQQLANHVRRAELDLHA
TANDSAAALATALDAACNACMKARTTFARHHKPAPWWTSHISALRKECLRARRSLQRARGTDAQEQRRLEFKAARKTLKK
AIRDSKRELFLKLCDEAEHDPWGQAYKIVTKKVRAGSQPPSDPVALSAIIDVLFPSCQGEGTRPAIEDXEEESVEAVTAE
EVLAAARNLAPNKAPGPDAVPNRALKVALAQIPEKIAAVYNQCLLEGSFPKVWKKQRLLLLTKPGKPPGEAASYRPICLL
DTVGKVLEKILATRLQAAISREGGLAEEQYGFRKGRSTVDAIMRVKTLAASAIQGTRWEGGTKQYCLVTTLDVKNAFNTA
SWSRTLEALKELRIPEYLLKMVDSYLSDRILLYDTREGQKERVVSAGVPQGSVLGPLLWNTMYDGVLRLPMDEGTTIVGF
ADDIAIVVVAKTVRGVETQTNSAVASVEAWMSRAGLQLAPQKTEAVLISSRKKVETATVHVGGVAVTSGRAXKYLGVWLD
TRLSFREHLEYAHRRASETTRALSRMLLNIRGPRQERRKLITSVVSSQILYAAPVWAEAMGVRSYARGIEADYRLCALRT
SCAFRTVSDDAALVIAGLIPLXELVRERKELANMAQDSPSSASDRKREARATSLANWQRRWEASSKGRWTFRLIPDVGEW
TGRKHGQVDFYLTQALSGHGCFRSYLKRFGHESEDCCPSCGSGVTEDSLHVLFECRRFEEDRLTLEEILEEAFTPSSMVP
QMLQTPVKWEAIAVFVAKMMTELRALERARNGREE
>R1-3_DWi_pol#LINE/R1 1876-4884 [Drosophila willistoni]
IRFLQINLNHCEAAQALLTQTVLELNTDAVLISEPYRCSEDSNWSRSLSSKAAIWTCNVRSQRCSQYSVWAAEHFVRAHI
NDFWVYSCYLPPSLSLEGYSKSLDDLITDIRNHNRVIVGGDFNAWAVEWGSPFTNARGRVLLETFAAADVVLLNSGSQFT
FRRAGMGSIIDLTFTSSGLYPSSSWKISDTYTASDHEAIVFAVEEPGRPPNANDTQDKKYKINTLNLQEFTAALNSCDWE
QDEAEVMAHRISKMVERACDAGMQQCGAYTRHHKSVYWWNQNISDLRKKCLAARRRYQRARRRDAENWPQLQHEFSSART
TLKHTIWATKREIFLRLCDSAEQDPWGKAYKIVVKRIYANRNHTPLEAEQLSSIVTELFPRKDNSLHSRRPATPAAGSYV
TEPVSIQEIVAATSQLKPSKAPGPDAIPNRALKLAMALRPDSFLETYNKCLDEGVFPTIWKRQKLVLIPKPGKPAGTASS
YRPICLVDTMGKVLEGLICTRLHRAINAGGDLSSNQFGFRKAKSTVDAIGKVVSIAAAAIEGTRWKLGTKEYCLIVTLDV
RNAFNTADWGCILDALYNFGVPEYLRAIIWSYFEDRQLCFSTTNGQSSYSVSAGVPQGSVLGPLLWNIMYDGILRLNLPA
GCETVGYADDVALVIVAKEVAKAEALANEAILLITEWLRSVGLQLAAHKTELVLISSRKRVETASVSVZGSIICSKRAIR
YLGVWLDTRLCFREHLEHVHAKALESARALARIMLNTRGPRQERRLLLSSVTTSIILYAAQVWADAVKTESYTRGIRAAY
RLSALRVCCGFRTISDDAALVIAGMVPIELQVEEARLVASSLEDGPSRREKRADARRRSIATWQQRWDQSSKGRWTHRMI
SDVRAWIGRQHGAVNFHLTQFISGHGCFRYYLHRFGHDASPFCPSCGDGVIEDAEHVMFECNRFSGEREVLFQEVGTTLT
VGNLIEEMISSPRKWDAVNSFAANAMRDLRLAERRRAGVEVRH
>R1-3_DWi_gag#LINE/R1 538-1875  [Drosophila willistoni]
MVGANAAEAVEEAAFRKSSRLGRTPPRVTAPPENGXQLIVAPASTQMVECSDAAPVAPPASNIPELDELGKLLGDLVEVF
MTKAVRHVNVNTKQAITRMKELQELLCQKVLDGQLTVCNERKSAESDQAPGEAKAVSRLRGKPPLGDSPKRPRDEVVTQS
CVPAKKQKSAHIGEIRTAKEPAAGGAEWQVVAPKPRRHTKQRQRPNAIIVEKKGNMSYSDILKLVTRSEDAKLKAVGECV
QKVRRTARGDLLLEIKGSADNLQRIKGDIDVALNGKAEAHTLTHRTRLEILDMDDETTVDEIINAISAELSINLPHDAVK
SLRPLRSGTQKAILCIPAHVAEILLKAGTVKVVFNVCRIRINETPVRCYKCLEIGHIAARCNRRVDRSKWCLRCGQNDHK
IKECHNKAKCFLCLEKGFDQLDHVSGARIALHGPSKVPRRCPTTKK
>R1-15_DWi_pol#LINE/R1 1034-2596  [Drosophila willistoni]
MLQRSPPQQGVSQNEAESQKKGANLDLNPAGTLMVAGXNLMANXVCEESKTQPSDTPKRARGTPSPASSPETRSVPFKRV
KVQPVCRELDEMGLVLESISMMTVKCKDGRNRSITNPLRENVAKLQRLHADLILLFQGKGVAPEETASPGLVPPQRASRE
QQTDAESATASEVLPARSCHCXCECXKPPSSATIGNXGSTSTSNNTSQAGQKSPKNSKSIPXLQRQQRHRMLPAXSVQKS
DQREDEGQISIRTSNSESSQGWQEVGPKRKTRVKEAKPRRAKPDALLIEPSSGVSYSDVLALVTRRADEKLDHVRSHVSR
LKRTAKDGLLLELGNAQSDSRGLMDEISXVLGDSAGVKVLRKFKSAIIRNLDDIAEPCHIXQALVKHANIDASTCTVKSM
RPGYKRNTQVAIITAPDVVMQKILLLGKLEVGWNLCSIKELEELPTRCYRCLGFGHVAXKCSSQTDRSNCCLKCGQPGHK
AAKCDGSETCFLCIEAGVDRAKIGHRAGSRLCPQLRRTGKN
>R1_Ele8_pol#LINE/R1 1434-4449 via tfasty with R1_Ele7_pol, 1 frameshift. [Aedes aegypti]
VEVTQINLNHCDTAQQLLWQSTTEARCDVAIIAEPYRVPLDNVNWVADSTGIAAIQVMGRFPIQEVVSSTKEGFVIAKVN
GVYVGSCYAPPRWTLDEFRRMLEELTDELVGRKPVLIGGDFNAWAVEWGSRVTNARGYSLLEALTKLDLQLCNEGTVSTF
RKNGRASIIDLTWCSPSLAGNMNWRVSEEYTHSDHQAIRYTIGRRDCAATPRTTTIVQQWKTKAFDKDLFVEALRVDSDI
PDLDAVELTRAMVRACDITMPRKRRPSNNRRPVYWWNEALCTLRAACLKARRRYQRARHEEVREERRIVFQQARTAFKRE
IKLSKSNCFKEPWGDAYRVIMAKIKGPSTPAETCADKLRVIVEGLFPKHDPTMWPATPYGNEEVGNAEARQISNEELIAA
VKALKLNKAPGPDGIPNVALKAAVLAYPDMVRKVMQKCLDEGQFPEIWKIQKLVLLPKPGKPPGDPGSYRPICLLDTLGK
LLERVILSRVMKCTESENGLSERQFGFRKGRSTVDAIRTVLERAEKALKQKRRGDRYCAVVTIDVKNAFNSASWEAIATA
LHRMRVPDYLCQILKSYFQNRVLRYETDAGPKELRITAGVPQGSILGPTLWNAMYDGVLSLELPKGVEIVGFADDVVLTV
IGETQEEVEMLATEAIGLVEDWMEGVKLKIAHHKTEVLLVSNCKAVMHGEITVGGHAIASQRKLKHLGVMLDDRLNFNSH
VDYACEKAAKASNALTRLMPNIGGPRSSKRRLLAVVSTSLLRYGAPAWGAALQTKRNRDKLNSTFRLITMRVVSAYRTIS
SEAACVIAGMIPICIILSEDIDCYQRRETRQARKLARIRSLAKWQQEWDASEKGRWTHRLIPNLSAWVNREHGEVNFHLT
QFLSGHGCFKQYLHRFGHASSPFCPECMEIEETPEHVVFDCPRFNIERNTVAAAFGEYFSVEGVVHGMISDPDLWNMMTN
MVVQIMSGLQRNWREEQRNETQRAALDVGRRGADEPEANLPPELSD
>ZhAT5_ZM#DNA/hAT-Tip100 547-2989 via tfasty with 37537014_Osa, 1 frameshift. [Zea mays]
MKKQGDIASLFRNHAAKKQKFIASSLSPDVTQASTPQEQEEERINEEIVNPMPSAPPPPTLYDVSRLPHDPGERQPIASY
HANDHDAIRRAYILRGPFQPYAHEFPNRKIGDRDRHFNFVWFQNFPWIEYSVKKDAAFCFMCYLFKSKANKGKGTSAFTS
DGWNNWNKGSEALLKHVGSMSHKTAEEKYLGFINPNAAIDNKIEKWSDDDRNLYKIRLTYSLRCLKFLLHQGLSFRGHDE
SEESSNRGNFIEILKFLAVNSEEVNKYVLNNAPGNCTLTSPKIQKQIIQCCAIETRKKIIEELGEEPFAILADESSDISH
KEQLALCLRYVDALGRPCEHFIGVVHVDDTSSLSLKDAIEALLVSHGLTLTRIRGQGYDGASNMRGDIKGLKTLIMQESP
SAYYIHCFAHQLQLVLVVVAKGNNDCVWFFDQVTLLLNIVGVSCKRHGMLRDARLENLMKSLECGELETGRGLNQEMGLP
RPGETRWGSYYKTICNIITMYPVIRDVLMILGEDTTIRSDWTRIHSMLGAFESFDFVFDAHLMFVILGYTNDLSVCLQRR
EQDIINAISLVNVAKRRMQQLRLDGWDQFLQRITSFCNKHDIQVPAMDGNYKPYGRSSRFVHNQTNDDHFRREVYIGVID
QISLELDSRFSEANMELLSCMSALDPSNSFASFDAHKVRKLADFYPNDMSSTDLLKLDLQLDNYIDGIREDDRFKDITNL
VDLSVKLVETKRHKVFDMVYLLLKLVLLLPVATASVERAFSAMSLVKTKLRNKMCDSLLDDCLVTYIERDIFFEVNEEDI
IETFMALRKRRPDK
>R1D_NLo_pol#LINE/R1 2640-6158 R1D_NGi_pol and R1D_NVi_pol near-identical. [Nasonia longicornis]
MPGPQKKNVAEVQPEERSPTTPGNPLVAESGRLLTGAREDLEHPSVRTWPVRSGGGLRRLGEGEVGLRAVSVRLVRDERI
EKMARKTVEVEEPGSKNEIRFLQINAGGGQLVNAEICELIASKKIDIVLAQEPYSKVNKGSRYFTGLRRASRAICLKSAG
TKTAPKAFVAVPNPDFHAFFVSALSTQHCVVAEVHTPSVTFFAVSMYFQFCDDIEVHLGQLEKVLENLSGQKVVIGIDAN
AESSLWSPRGTNEKGEKLERLIAAFGLHVVNDRTQPPTFEERGVSSYIDVTLVSGSMIAEVQSWKVKRDWTSSDHNAIVF
KITTVAQTDRVDSSRFNIRRADWGLLDSTIKELSVSHLDHIILDSAEEVERMADALQKVLYEACETAIPRRRRIRKNNPW
WTRELTDKKSELYSARRRMQQQWSLPGHSLRKAEYRALLRDYCRSVKGAKVGSWQEVVTVRGNEEPWGVVYKQLRGKLQN
ERTLSSVRCGDTESMSMLETANRLLEVHVPDDTPFNETPEQAQIRESINSPPETEDAAPFEQWEIALILASLKNNKAPGF
DLLEVRVLKAAIKAIPHHFLRLFNACLEHGVFPRAWKQASLIFLPKGGKDSNDSKSYRPISLLPVTGKLYERLVKRRLSD
TALGPDMISDRQFGFRAGMSTEDAIIELRRLTAASPKKQVAALLFDVKGAFDCIWRPAILQSLKEKNCPKNVYKLLVSYF
EDRQAQVVWGTNQVSKQATRGCPQGSVLGPSGWNLGFDPLLRSLEQGVVTEGGGKLPINFVAYADDLAVLVEGDSRAEIE
KVGKAVVKHIVEKCSAIKLEVSESKTVGIFVKKPKVVGSKAVKINRKDCRKGGARNPKIELGGKSISFEQSVRYLGVHFD
ANLGISAHCKYLREKLVPLFSDLRKLAQCQWGLGHRALETIYKGVFVPTVCYASAAWYKEGAHTDRILEDLHRQILIAIT
RCYRSTSYEAACVLAGTLPICIQLRVSMAKYHLRKGEDAEIGGVVIRHDPEGLKENYNRVLEVANEMWQARWEASEQGNA
TRELFFPDVVDRVKSDWIRPDHFTSQVLTGHGYFNEKLHQLSLAKAAACLCCGEPDNNLHFLLECPAFAEFRDELITPIS
GGLEAPEATLMLVSSPEGFAALKEYSRVAFECKRQLENALTESDEGLSSESEE
>RT1_gag#LINE/R1 2482-4269 [Anopheles genus]
MSGLGGDAHPQGSSGRVLRPRARSVSLNRVDALKVSDSTPVEPPPTAGIVYLSDDEEEELNCTILAGPSGLAVPPMGKVP
LVVLDKLPSQSQQREEMTVPATSTPKAGKCSSAEPSLSEMNESLKLLAMQVAQLSKELSLCRKELQESLMKNAALERELE
TYRMGARSVIELQQQAAAAPMMTAQGAHSSRNRRGRQGPQQQEQRQQQQQHQQREQQQQQQQQQQQQQQQQQQQQRNQQR
EWQQQQQQQQHQQREQQQQQRVQQQNQQHQRQQQQQQQQRQQQQQQEQQELWTTVVRRRQNTQQQQQSNQPQQQQQQTGR
YQPPQMRQQLQQQQQQRQPQRYVVAGSSQQQQQQHQQQQQKRKRPKPELIEISPGQNETFESVSLKIRKAVDDNGTHKEL
KDFIIMGRRTDKALLRLTLARSANATLILQQIRTIIGEAGTCRHVTEMAALVVNDIDPLAKEEELTALLENKIEGGAGIV
STSIRTMPDGTQRARVRLPAKAAKALDGTKLRLGFCISRVKMAPPTPKEHLRCYRCLEHGHNARDCRSPVDRQNVCIRCG
QEGHKAGTCMEEIRCGKCDGPHVIGDRTCDRSATQ
>R7Ag2_pol#LINE/R1 2526-6113 Includes gi|28569882|dbj|BAC57918.1| reverse transcriptase [Anopheles gambiae]
MHFGPEVHCLRRPTSHRRPHVQRTAITMLNILQFNANHCENAQDLALHVITTESLDVLLLSEPYCVPRNNGNWVTDESKT
VAIVVNGNRLPIQRIRHRQTLGVVAADVGGTTIVSCYVSPQTGVPEFRSIMEKIDLIVRGCSRVLLAGDFNAMHLDWGSS
RTCPKGLELLQLADNLGLVLLNKADCLPTFKGNRADTNRFPPSRPDVTFASSVISRLDPRDDSARGWRVPDVATLSDHRY
VQYEVGESSPPTRDRAARRGQRPARVSKAGTRWKTSQFDSQLFGKALAMTGFARQVNSVESLVESLTSVCDETMSRVFPT
QDHTGRPAYWWTPAIQAMIDNLSRKEQMTMRTIPPEEQLQTELLAARESLRKAIRLSKNEAFDRFLRSIREDVTGIFFRK
VFHWFQGARSAPERDPAELRRIVDALFPVHPPVEWPDLGVGNMAPLRSIGLTELDQIAASMHPRKAPGLDGVPNAALTVA
LRQQPEPFRRVFQECLDMSCFPQPWKKQRLVLLPKPGKSPGEPSSFRPICLLDNTGKALERLLLNRLNEYIEDPESPQLS
EQQFGFRRGRSTLQAIQQVVDAGRRALSLGRTNNRDRRCLMVVALDVRNAFNTASWQSIAEALQAKGVPVQLCRILQDYF
ADRELEYDTADGPVTRRVSAGVTQGSILGPTLWNIMYDGVLAVELPEGASIVGFADDLAILAAGTIPEHAAAIAEEAVAA
VNNWMVQHKLSLAPEKTELLMISSKRSGYRNIPVNICGVEVRSKRSIRYLGVMLHDHLSWRPHVEMVADKALRVVRALRG
IMRNHSGPQVSKRKLLAAVAASIIRYGAPVWTEATDLQWCRRILDRVQRLLAQGITSAFHSTSCEVAVVLAGELPYHLLA
KEDARCYNRQQSSPDSSREAIRQEEKETSLQLWQQQWDDVAANNTSRYLRWAHRQVPDVRLWTGRKHGEVDFYLSQVLSG
HAFVHEFLHVFGFAPSPDCPRCAGSVESVAHVMFECPRFADVRAEFLQGVGEHNLGSRLLESAEWWDRIQQAARRILSVL
QEDWREEQQTLAAAEAAQPDPASSLPEDMAEAERRLLRRREVRNRSAQRRRQQQRQQRLGDFELVPAVLARAAANEAAEP
TGEVEEEEVSPPVPPIPPRSRRLPPSPRTTEMRRRRRNYMQLQYRRRRRDGELGDVPQGRQRRGRIPTSAAELER
>R1_DMo_gag#LINE/R1 328-1836 [Drosophila mojavensis]
MDSEASSGSSTMSKKKKRGRGAKSHLRHAGDAAAMPPPTDSPPRKLRVHVDSSADESDASLVATAATVASAASAAPTAAP
AANAAANTAAPAAIPAMEAILAAAAAAAAPAAAAAPAAAAPAAAATHAARNPAPLEAPSTSAAAAAASAHSVSSVPAGAG
TASSNSMVQRMLAIERELRRAVVADNVPGAVALSVLDNAAKFQELILEMYGRMKELETIVRTRPQATAPQTSAAPAASYA
AVTATAVAAPVALPRARKIAETWSAIVTSNNPEETPQQVAERVRKEVAPALGVRVHEVRELKRGGAVIRTPSAGEIRRVL
ANPKFKEVGLDVKENAAPRPRINVINVDSSISPNKFMEGLYKNHFFGHCSNAAFEKAVKIASKPWSSEDGPTVNIILEME
RKALDILEDSERIYVEWFSFRWHPLTPTYACFRCFSFDHKVAMCRMKEQTCKRCGQSGHRVSGCRNPVHCRNCSFKGLPA
GHHMLSETCPIYGRVLARVAAKH
>R1_DM_pol#LINE/R1 1728-4793 [Drosophila fruit fly genus]
TLMFSFIQANCGRGRAATIELGVRLRRSESMFALVQEPYLGGDEMDVLPEGMRVFTDRRGKAAILVDHQEAICMPVETLT
TDYGVCLVVKGSFGSIFLCAAYCQFDAPLEPYLRYMDAVLLQASRTPAILGLDANAVSPMWLSKLSRHAEGQANYRRGEL
LSEWMLEARVAALNQSTEVYTFDNHRATSDIDVTIVNEAASMWATYEWRVDEWELSDHNIITVVAEPTTARSVESIAPVP
SWNFSNARWRLFKEEMVSRIAELPENFSESPLDQQVSTLRSIVHSVCDTALGRKLTRSPSRRARWWTADLCAARREVRRL
RRLLQDGRRRDDDAAVELVVVELRRASAYYKKLIGRAKMDDWKRFVGDHADDPWGRVYKICRGRRKCTEIGCLRVNGELI
TDWGDCARVLLRNFFPVAESEAPTAIAEEVPPALEVFEVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRC
IRLGYFPAEWKCPRVVSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCRWQFGFRQGRCVEDAWRHV
KSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLGCREMGLWQSFFSGRRAVIRSSSGTVEVPVTRGCPQGSISGP
FIWDILMDVLLQRLQPYCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEVGDCLSTSKTVIMLLKGALRRAPT
VRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWY
DTAEQVAAQRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLAAKLLAIKYKLKRGFPLEENDWLYGEDIACLSWE
QRKTRLEECLIQSWQNRWDDDSEPGRVTHRFIPYVTLAYRDPSFGFSMRTSFLLTGHGSFNAFLHGRALSDTTACACGDP
YEDWMHILCACPLYADLRDLDGLGVQRLGENWIFEGILDDQEKTQRLAMFAEEVFLRRRAL
>R1_DPe_gag#LINE/R1 434-1840 R1_DPs_gag near-identical [Drosophila persimilis]
MEIETEADASDTSVASVGASSSSSVPARRRGRPKSSAAKQGAKKIGLGIGLAGERPIPAERSPPTSLPFEQAPSTSAAAA
ATTAASTSAAAAATAAAPLPPRCHTAATTAATTAATCPATDIVAAGYSAIIAEMSAIRMAVSKAVLKGLMPPEASMEILV
ATNRYDELVMALAGEKVRLEERARMPPPPRPAAAAHTGTTAVTTAAYATAFPGLPAPSAVAAPIPKPRDTWSALIKSKNP
EETSKELVERVKKTVVPTLGVRVHEVRELKSGGAIIRTPSVSELRKVVASSKFTEAGLEVKKRPETKPQVVVYDVDTSIT
PEEFMEELFTKNLEETMTAAEFKKSVHLGSKPWSVTDGATINVTLEVDAKAQEALRECVYIKWFRCRCRSLVRTYACHRC
AGFDHKVSQCRLKENVCHRCGQNGHNVARCPNPVDCRNCRFKGYPAAHSMLSAACPIYGAVLARVQARH
>R1_DSe_pol#LINE/R1 1793-4849 R1_DEr_pol, R1_DSi_pol and R1_DYa_pol near-identical. [Drosophila sechellia]
MFSFIQANCGRGRAATIELGVRLRRSESMFALVQEPYLGGDGMDVLPEGMRIFIDRRGKAAILVDHQEAICMPVETLTTD
YGVCLVVKGSFGSIFLCAAYCQYDAPLEPYIRYMDAVLLQASRTPAILGLDANAVSPMWLSKLSRHAEGQANYRRGELLS
EWMLEARVAALNQSTEVYTFDNYRATSDIDVTIVNEAASMWATYEWRVDEWELSDHNIITVVAEPTTARAVESIAPVPSW
NFSNARWRLFKEEMVSRAAELPENFSESPLDQQVSTLRSIVHNVCDIALGRKSIRLPNRRARWWTADLCDARREVRRLRR
LLQNGRRHDDDAAIERVLVDLRRASANYKKLIWRAKMDEWKRFVGDHADDPWGRVYKICRGRRKCTEIGCLRVNGEMITD
WGDCARVLLRNFFPVAESEAPTAIAEEVPPALEVFEVDACVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIR
LGYFPAEWKCPRVVSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCRWQFGFRQGRCVEDAWRHVKS
SVCASPAQYVLGTFVDFKGAFDNVEWSAALRRLADLGCREMGLWQSFFSGRRAVIRSSSGTVDVPVTRGCPQGSISGPFI
WDILMDVLLQRLQPYCQLSAYADDLLLLVEGNSRAELEEKGAELMSIVEAWGAEVGVTVSTSKTVIMLLKGALRRAPTVR
FAGANLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYDT
AEQVAARRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLAAKFLAVKYKLKRGYPLEENDWLYGEDTTCLSWKQR
KTRLEECLLQNWQNRWDDDSEPGRVTHKFIPYVTLAYRDPSFGFSMRTSFLLTGHGSFNAFLQGRALSDTTACACGDPYE
DWMHILCACPLYADLRNLDGLGVQRLGENWTFNRILEDQQRIQRLAAFADEVFRRRRGI
>IS10_tp#DNA/IS 96-1316 [Root]
SDNKMCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPTKARTKHNIKRIDRLLGNRHLHKERLA
VYRWHASFICSGNTMPIVLVDWSDIREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTP
LIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRS
KGRKNQRSTRTHCHHPSPKIYSASAKEPWVLATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSE
RFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNLFTHG
YALGKL
>50931797_Osa_pol#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MLGGDFNLYKFASEKSNSNIDVRCMDMFNKFISDLDLREVHIIGPKFTWTNKQYCPTQEVLDRILVSDDWDDRYPNSLIS
SVLRVGSDHTPLLLDTYELVVEKCRYFRFESAWLAVEGFKDLVGKKFPDRDGSYILEFWNKKQVEMRRFLTGWGINKQSE
DRRAKLSLQKKLEEIDSKAVDAELNADEWRHRYELEDALEHIYELEELYWHKRCGEQWLLEGDRNTEYYHRIANGRKKRC
TITSLMDGDRELTTKEDLKHHIVEYYKSLFRSESSSSIHLSQGVWVDSLCLKEEDKNTLMRPFTIEELYKVLREAKPNTA
FGPDGFSIPFYRAFWPQLRPDLFEMLLMLYNEELDLKRLNFGVISLIPKNSNPTDIKQFRPICVLNDCFKFISKCVCNRL
TEIARDVISPTQTAFIPGRFILEGCVIIHEVLHEMNRKNLEGIILKIDFEKAYDKVSWDFLIEVMVRKGFPSKWVNWIKT
CVMGGRVCININGERTDFFRTFRGLRQGDPLSPLLFNLISDALAAMLDSAKREGVLSGLVPDIFPGGITHLQYADDTVLF
VANDDKQIVATKFILYCFEEMAVLKVNYHKSEIFTLGLSDNDTNRVAMMFNCPVGQFPMKYLGLPIGPDKILNLGFDFLG
QKLEKRLNSWGNNLSHAGRAVQINTCLSSIPSYAMCFYQLPEGVHQKFGSIRGRYYWARNRLKGKYHMVKWEDLAFPKDY
GGLGFTETRRMNTALLAKWIMKIESEDDSLCIELLRRKYLQDGGFFQCKERYASQFWKGLLNIRRWLSLGSVWQVGDGSH
ISFWRDVWWGQCPLRTLFPAIFAVCNQQDILVSQVKEGVRIACLLEGPLVLRRFQSGML
>XP_473053_tp#DNA/TcMar-Stowaway gi|50926093|ref|XP_473053.1| OSJNBa0029H02.9 [Oryza sativa]
MAAIPLFDLNAPPPEDGDELRGGEAIADEAGVNIAGDEGGGGAVADEVIAQNAGNIASGEGVQPQERKIRRWLSDKERYA
VYIALHAKSKGGRLEKDTTKKVAEYFNVGIQVIQRIWKHAREQVALGLKVDVDNRKTRCCGPNKMEIDLSKIATIPLNRR
SNLRSLANSLGVSIATVHQKFKLVVDMTKRKKTYYLLPEEEDPLRTVQNKNRIGKVMFLTAIARPRFDEEGNVTFSGKIG
TWPFVKEVPAIRKSRNRTIGTLETKSIIVNRDVMRQFLIEKVIPAIQSLWPEEDIGDTIYIQQDNARTHVPPNDPHFLQA
VAATGLNIQLKQPSNSPDMNVLDLGFFSSIQSLTNCSSPKTIQELIHAVQEEFDGYEASKINRVFLTLQLCMLEVMKDNG
GNRYKIPHMNKQALEREGRLPSWLSCDARVYEKALDCLEQVG
>XP_470325_tp#DNA/TcMar-Stowaway gi|50919929|ref|XP_470325.1| putative transposase [Oryza sativa]
MALDLNELADEGDEQAVPDLNEPVADEGDEHDVPDLNEPVVAEVEMHVGQEEDQLGGDVQGGANHNHPDGADAMDEILQI
YGGHNQHGFPFDVNSDAYEEHLQMQADMQEYDVYAGDVEIVFEQEELDDSDEEDEHPNKNLTNIQRQEIYDALVKKTING
RLRKKATTEVAEMFNIKRGRVQDIWRRAKQCRAQGIPVNVSSRKKTNSGRKKNEIDLSDVANVPLQLRGTLRSFASAAGI
PKSTLHRMLKEGLIRRHSNTLKPLLKEENKRSRLQWCISMLDWHTLPNEPKFVDMRNIVHIDEKWFNTTKKTRTFYLVHW
EDDPYRPVQNKNSIDKVMFLAAVARPRYNEEGICTFDGKIGLWPFTKKEPAQRTSQNRPRGTLVTKTIKVDRDTVRSFLI
AKVLPAIISSWPRDDAHSTIWIQQDNAPAHVPVDDYQFAYAVSQTGFDIRLMHQPPNSPDMNALDLGFFASLQSLTYRRI
SRNMDELIHNVEQEFQAYDDNKLNRVFLTLQSCLLEVMEADGGNGYRIPHMGKERLERLDILPNTLSCGRELYEKVISAL
ANQVQ
>BARI_DM_tp#DNA/TcMar-Tc1 337-1398 [Drosophila fruit fly genus]
KLDLIIFLLQLLNKMPKTKELTVEARAGIVARFKAGTPAAKIAEIYQISRRTVYYLIKKFDTVGTLKNKKRSGRKPVLDQ
RQCRQILGVVAKNPSASPVKIALESKNTIGKQVSSSTIRRRLKEADFKTYVVRKTIEITPTNKTKRLRFALEYVKKPLDF
WFNILWTDESAFQYQGSYSKHFMHLKNNQKHLAAQPTNRFGGGTVMFWGCLSYYGFGDLVPIEGTLNQNGYLLILNNHAF
TSGNRLFPTTEWILQQDNAPCHKGRIPTKFLNDLNLAVLPWPPQSPDLNIIENVWAFIKNQRTIDKNRKREGAIIEIAEI
WSKLTLEFAQTLVRSIPKRLQAVIDAKGGVTKY
>IS1554_Mtu#DNA/MuLE-MuDR IS1554 gi|15840343|ref|NP_335380.1| IS1554, transposase [Mycobacterium tuberculosis CDC1551]
MDAAQVIEPAHAGQDVDEAAVAARELSGAERALVGDLVRQARAEGVALTGPDGLLKALTKTVLEAALQEEMTEHLGYDRH
AAAGRGSGNSRNGSRNKKVITDACGQVEIAVPRDRNGTFEPVIVGKRKRRVTDVDRVVLSLYAKGLTTGEIAAHFADVYG
VSVSKDTISRITDRVIEEMQAWWSRPLEKVYAAVFIDAIMVKIRDGQVRNRPVYAAIGVDLDGHKDILGMWAGEGDGESA
KFWLAVLTDLRNRGVKDIFFLVCDGLKGLPDSVSAAFPLATVQTCIIHLIRNTFRYASRKYWDKISVDLKPIYTAASAAE
ARLRYEEFAEKWGKPYPAITRLWDSAWEEFIPFLDYDVEIRRVPCSTNAIESLNARYRRAVRARGHFPNEQSALKTLYLV
TRSLDPKGTGQTKWAVRWKPALNALAITFADRMPAAEER
>ITmD37E_Ele3_tp#DNA/TcMar-Tc1 151-1158  [Aedes aegypti]
MESKEQLVRDKILRIHHENKDLSHRSIAKTLGIANSTVSRVIKRFEERLTTDRKPRSEGKSIPYNTKNHNRVVGAFNRNP
NASVRDVAKNLHLSRSFVQKAKTKAGLRTFKVQKAPNRDEKQNKSAKTRARKLYLNMLTKVECCIMDDETYVKADFKQIP
GNLFFTAKDKFSVPEHVRTQKMSKFAKKFLVWQAICTCGKRSAPFVTQDTMNGQVYMKECLQKRLLPLLKAHNVPTIFWP
DLASCHYSKDVLKWYADNKVNFVPKMFNPPNTPELRPIEKYWAIMKQHLLKRPKVVKTVEELKKVWVYMQKTVDSQVVQN
LMAGVKAKVRAFAYGL
>Stow1_OS_tp#DNA/TcMar-Stowaway (ORSiTETN00400001) [Oryza sativa]
MPFFRTPLSRMLLSPSIRIRSPSIQQRTSPSATTHGICQGREQRTMDIDLNLEPGDTYAATDPGEAGFDHSAATDAQGNG
EAGFDHSAATDAQGNGEAGFDPFDSNADDDVLVTLEEIGVDPGQENVQPQFDPFFDSDVDDAILVPQENTHKNVVLDNDK
RRAIFDAMLVKARKGYLKGHESKEVSAKFSVPIRTVQRIWKKGKSCLDQGISVDVASGRSRCGRKKKVVDVSCLEDISIL
SRTTIQDVATQLGVSTSKVYRMKKEGAIKRVSSSLDPYLTDQNKIDRLKWCIEMLDPRSVPHNLVFKPLFDFIFIDEKWF
NITRKTVRYYAAPTASRRIRTIQNKNFIPKIMILTALARPRFDSNGNCIFDGKIGCFPFVTYTAAKRSSVNRPAGTIEMK
PIESITKEVIRSFMIEKVLPAVRAKWPREDAGKPIYIQQDNARPHIAPDDRMFCEAAKQDGFNIKLVCQPANSPDLNVLD
LGFFNSIQSIQYKSASTTTEELVAAIDRAFEDYPVRLSNRIFLSLHACMREVIEVLGDNSYDLPHIKKGVLERQGRLPLQ
LRCDAKSVNNANNYLR
>Mariner-10_SM#DNA/TcMar-Stowaway 122-1240 [Schmidtea mediterranea]
MTKHLNSDEKTLILLHYERLLMKMGKVDLEYQTVEQLGKAFGVGKNYVKELRKGFIESGTLLRQSGSGRSAVDKEERMDL
VVEAVRAKRDSTVRDIAAITEVPRSTVWRLLNESEFKICSRRTIPLLSQAHIDSRLKFCREQRRNNWNDWVDVDEKWFEL
NNTKRKERYHENSPKKKIPCVSKGNPQKLMVLSAIAKPRPEYNFDGLIGIWRITADYVAQRSSKNHARGDIYKIDTTITA
DSYYDLMTKHVIPAVRNKMNFTDNIAIQQDNARPHVGKRNVTRIEEFGAVGGSSISXVNQPAQSPEHSSRIEKSTKGNIE
ELWQNIQDAYYSYDASXLKSLWGTKSAVIQEIIKARGXSINIPHTGVRNSXL
>ISC1332_Sso#DNA/MuLE-MuDR ISC1332 gi|15898775|ref|NP_343380.1| Transposase ISC1332 [Sulfolobus solfataricus P2]
MTKSKNNPGRGNTIRESNTMKVMEEIREKIRKAIKEGVSLREIEEIILQEAMMEEREAYLEVEDDHKNGTYFRYLGTGDG
VLRLRVPRTRKGGFRPKILPEKYERTSPDYEDFLQQLVLSGMTPSQVKAVLAAKGIPYSEIVMNRVAERISNKLKEYKSR
ELPHDLLALYIDVKIVKVRISESIMERAIYIAIGVDLEGNKFVLDYEVRDREDLDGWKSFLSGLVSRGVSRVDVIVSDDF
SGLDRVVSTLFPSSQHQLCITHMVRNLMRVLPDKEKEELMIRVRDLKSSRNVEEGRKAILSLSQLVQPFSPARAKRLLDA
ADKYCSFLNFPREIRHYLYTNNTSESFNLTLARFEEELGGYFPSLRSLEVYLYVSIHESNSRWKFRPMSVIRHYSYHLKQ
LHASRFQVSLDEDF
>IS2606_Mul#DNA/MuLE-MuDR IS2606 gi|42414749|emb|CAE46842.1| probable transposase for the insertion element IS2606 [Mycobacterium ulcerans]
MMTKTVVAVQPSQNHEDEAGAVAAIDVPSSRDVDELEVARELVRQAREAGVGLTGPGGLLKAMTKTVIETALDEELSEHL
GYDRHDRAGYGNGNSRNGTRSKTVLTDACGSIEIDVPRDRAGTFEPKIVEKRQRRLTDVDEVVLSLYARGLTTGEISAHF
AHIYDAAVSKDTVSRITDRVLEEMTAWHTRPLERVYAAVFIDALHVKIRDGQVGPRPVYAAVGVDLAGHRDVLGMWAGEG
DGESAKYWLAVLTELKNRGVADIFFLVCDGLKGLPDSVSAVFPDTVVQTCIIHLIRGTFRYAGRQHHTAIARALKPIYTA
VNAAAAAEALDAFDTEWGHRYPAAIRLWRNAWNEFIPFLDYDTEIRKVICSTNAIEWLNARYRRAIRARGHFPTEQSALK
CLYLVTRSLDPTGTGQKRWTMRWKPALNAFAITFADRMPGSETT
>XP_469465_tp#DNA/TcMar-Stowaway gi|50918137|ref|XP_469465.1| putative transposase [Oryza sativa]
MALDPNIPLDERDEEVVPDLNEPMGQQEEMLAGEEDDHLGASGLKGKKSPNVQENHLSLLSACHTVENTVMMPWNKFWKL
MEVTTKMHFLLISTLIPTRNTYKCKQEYGVYAGDVNIVFEQEELDDSDLEDEHSNKNLTNIQRQAIYDALLRGTLRSFAS
ALDPHTLPNEPKFVDMRNIVHIDEKWFNTTKKTRNFYMVHWEDDLYRPVQNNNSIDKVMFLAAVARPRYNEEGICTFNGK
EPAQRTSQNRPRGTLVTKTIKVDRDTVRSFLIAKVLQAIISCWPREHAHNTILIQQDNAPSHVLVDDPQFAYAVSQTGFD
IRLMNQPPNSPDMNALDLGFFASLQSLTYRRISRNMDELIDNVEQEFHAYDDSKLNRVFLTLQSCLLEVMEANGGNGYRI
PHMGKERLQRLHMLPKTLSCGCDLYDKVRSALVNQVQ
>IS1512_Mgo#DNA/MuLE-MuDR IS1512 gi|2078341|gb|AAB54010.1| IS1512 transposase [Mycobacterium gordonae]
MTAAHDIDLPALLAERLTTTHPDVLRELLATFIHTLMGAEADALCGAAYGQRSSERTNSRNGYRHRQFDTRAGSLDLAIP
KLRQGSYFPDWLLERRKRAERALTTVVATCYLLGVSTRRMDKLVETLGITGLSKSQVSVMAKELDTAVEAFRTRPLDAGP
YTFMAADALVLKVREAGRVVNVHALIAVGVNADGYREILGIDVTTAEDGAGWLTFLRSLTARGLSGVALVTSDAHAGLLS
AIGATLPGASWQRCRTHYATNLMAITPKSSWPWVKTLLHSVFDQPDATSVAAQYDRIIDALSDKLPKVADHLEAARSDLL
AFTAFPKQIWRQIWSNNPQERLNKEIRRRTDVVGIFPDRDALIRLVGAVLAEQHDEWAESRRYLGLDVLSKSRLTTTTPA
EQEDNPAALTA
>Mariner-11_DAn_tp#DNA/TcMar-Tc1 404-1405  [Drosophila ananassae]
MRKLSEDIENNVVSLTENGCTSREISKRLGISQSAVIAVQKRRNVTPKAQVAGRKKLLKESDARLMMSEMRKNKLLTPKG
ASLAINKNVSEWTARRALRDIGYIASVKKIKPALSVKNVKARLKFARAHKNWTVDDWKRVVWSDESKFNRFQSDGKQYCW
RRPGDRIQRHHVKQTVKHGGGGIMVWGCFTWWHVGPLQLIEGIMRKEDYLQILQTNLPNFIEKCAYPEKEIVFQQDGDPK
HTAKIVKEWIEKQPFKLMEWPAQSPDLNPIENLWSIVKRRLGQYEAAPSNMGILWERVEAEWRRIPKDIIENLVESMPKR
VQEVISNKGLWTKY
>Mariner-7_DAn_tp#DNA/TcMar-Tc1 355-1353  [Drosophila ananassae]
MKKTSSDQENSIVSLTNQGFSTRAIGKKLNISQSVVVRVQKRKNVKSKNLSGRPRLLKDSDARLMMQRMRKNRNLTPKEA
STEIQKNVSRWTARRALKKIGYKAAVKKNKPSISKKNARARLKFARDHKNWTTEQWKRVIWSDESKFNRMQSDGKQYCWR
RPGEKLNRTHIRESVKHGGGNVMVWGCFTWWNTGKLIKIDGIMHKEDYLEILKNNLPDFIEKCAYPEQELIFQHDNDPKH
TAKIVKGWLKNQVFTLMDWPAQSPDLNPIENLWAIVKRRLGRYEAAPSNLDELWRRIENEWKKIPKEIIQNLIESMPRRL
NNVIKNQGLWTKY
>Mariner-15_DRh_tp#DNA/TcMar-Tc1 359-1516 via tfasty with Mariner-1_DK, 2 frameshifts and 2 stopcodons.  [Drosophila rhopaloa]
MMGKNIKEIDHDLRKVIVKLRDEGKTIREIGGIVGRSHCSVQRVLENFNLSGSCGSKPRSGRPAKLSERGRRSVLKTIKI
NPSTTASQMAKDIKEKYNNDHHDDNVRKILKNEDYNSRTARKKPLISQVNKIKRMEFSRKCNNKPQEFWKKVIFSDESKF
CIFGIKVRKLVWRKNGTALDIQNRAPTVKHGGGGIMVWVCLAASGVGNLVFIESTMDHKMYINILKENLHQSVTKLGLED
DFWFQQDNDLKHCAMNTKPWVLYNVKNRLNSPPQSPDLNPIEHLWELQERRIRQHTITSKDMLKKVMVxxWNKISVEDTT
KLVQSMPNRLAEFLKRKGYLTSYKIQVLLPKIWSFLLIFVFVRILFLMQNQAILYIFVNIRKIIKC
>Minos_tp#DNA/TcMar-Tc1 One intron (= gi|436466|emb|CAA82360.1| putative transposase) [Drosophila fruit fly genus]
MSQYSMQKNFRLLQISRSLATMVRGKPISKEIRVLIRDYFKSGKTLTEISKQLNLPKSSVHGVIQIFKKNGNIENNIANR
GRTSAITPRDKRQLAKIVKADRRQSLRNLASKWSQQLAKLSSESGRDKLKSIGYGFYKAKEKPLLTLRQKKKRLQWARER
MSWTQRQxDTIIFSDEAKFDVSVGDTRKRVIRKRSETYHKDCLKRTTKFPASTMVWGCMSAKGLGKLHFIEGTVNAEKYI
NILQDSLLPSIPKLSDCGEFTFQQDGASSHTAKRTKNWLQYNQMEVLDWPSNSPDLSPIENIWWLMKNQLRNEPQRNISD
LKIKLQEMWDSISQEHCKNLLSSMPKRVKCVMQAKGDVTQF
>MARWOLEN1_tp#DNA/TcMar-Tc1 395-1399 [Drosophila ananassae]
MRKLSGEIQNNIVSLTESGNSTRQIAERLGISQSAVVSIQKRRKLTPKPQVSGRKKLLKDSDARLMMSEMRKNKNLTPKG
ACLAINKNVSEWTARRALQDIGYMSIVKKNKPALSDKNVKARLKFAKDHKNWTIDDWKRVVWSDESKFNRFQSDGKQYCW
IRPGDRVQRHHVKQTVKHGGGNIMVWGCFTWWHIGPLQLVEGIMKKEDYLRILQTNLPNYFDKCAYPEKDIIFQQDGDPK
HTAKIVKEWIGKQHFQLMEWPAQSPDLNPIENLWSIVKRRLGQYDSAPKNMGDLWERVAVEWSRIPQDILRNLVESMPKR
VTEVIVNKGLWTKY
>Mariner14_CB_tp#DNA/TcMar-Tc1 337-1393 wised with Tc1-1_AG  [Caenorhabditis briggsae]
MSRGHLLTDAEKAFIDAFKTSGWTNRAIAKHLNRSHDCINRFVSNRTRNNQPNKAGRPPKLNSRAKRSIVRVASNTMKSC
NDIKKELNLGVSKCTIWRALKDDPNIKRAVMRPAPKLTDNHKTRRLDFARKNMGTNWDKVLNLKLSIQIXYLLQVIFSDE
KKFNLDGPDGFKSYWHDLRKDPAVFAKRNFGGGSLMVWGAFASAGYLELAFTTCRMNSTDYQDVLQNHLIPFRRRFSRRQ
FIFQQDNAAIHVSRSTLDWFQSKNIDVLPWPACSPDLNPMENVWGELVRRLYRHGKKYASIGELRDALIAEWSLLEQEFK
TKSTQYIQNLIKSMPNRLFDVIAGKGSSTKY
>IS1245_Lxy#DNA/MuLE-MuDR IS1245 gi|50954958|ref|YP_062246.1| transposase, IS1245 [Leifsonia xyli subsp. xyli str. CTCB07]
MFAVVMEAYVHGVSTRKVDDLVKALGADTSISKSEVSRICANLDEDVAAFRDRPLADTTYPYVFLEATYCKARVGRRVVS
QAVGVAVGVAADGRREVLGFEVGETESQPFWTTFLRSLKARGLGGVKLVINDAHTGLTAAIQTVFAGASWQRCRVHFMRN
VLIAVPKTAGPIVASIIRTIFAQPDTEHVFTQFHEVVRMLTRSHPKVADMLEDAQDDLLAFCQFPFQHWRQIWSTNPLER
VNKEIKRRTDVVGTFPNPAALLRLAGHVLIE
>Mariner19_CB_tp#DNA/TcMar-Tc1 42-1102 wised with Mariner16_CB  [Caenorhabditis briggsae]
LGPAPKNNFENFRNXXKVGTLYKXDLYHLVSFCFLFRIMKTSPHQPMIATFLXDGVHVXDVARRLGVSSSSVRNVFENIQ
KDQRNLLKQKLRPPLTLNIHQTRGIIKRQIXKKMGFNLGIARSRVQKIVKXDLNTCSYRIYRKLFLSYTSGACRREKCKK
LFSHLHLRRVSDEIWGDVKSFTDETLPNRRDQGQLLPKDDNESPERILXFKLPFRKNFKVWDRITATSTNFLVFGENQLG
SQVYQMTVLMHNLLSWATQQFVGHXKTICXDSAPSCGSKSTIAVLDAHFPRKLGYDWGPSNSTDFSPMDFNVWRLLKNKI
SGISYSFLDFLXSPFQKFWGDFDVNYSRRTAKFF
>Mariner-3_DK_tp#DNA/TcMar-Tc1 341-1365 via tfasty with Mariner-1_DK_tp, 1 frameshift and 1 stopcodon. [Drosophila kikkawai]
MVSKGKQICAYERKIILKLHLKGKSYRKIGKXIGRSHSSVQRVITNYAKSGSILSAPRSGRPSKLMKREKSKILQLVQNN
PKLTAHKLKLEGEEWFSKTVSDNTIRRAIKKGGYKSRVARRKPFISETNKKKRLDFANDHITKPSEFWNKVIFSDKSKFC
IFGIKGKKYVWRKSGTALEKQTLMPTVKHGGGKVMIWGCMAANGVENLSFIDSIMDHRAYIDILKANLVESDRRLGLEGD
FIFQQDYDPKHTAHNVKLWLLYNTKKQLRTPPxSPDLNPIEHLWDLLERRIRKRIITSKPMLKAVILEEWQKITAEDTRK
LVESMPKRLREVLKTKGYPTSY
>Mariner55_CB_tp#DNA/TcMar-Tc1 (266-1339  [Caenorhabditis briggsae]
MGRKHNNKTSTLVVQEAVVQGIQMGLKRNDLALQFNLAKSSITRIYKRYQVRESCLFIVKFLFQLRQGVVIRKSPGRPRK
TNHLTDRNIVMTSRTNPRLSAGEISAIVDGPMTPVPHVRTVRRRLAQSGLNGRRPATKPFINAKNRKIRVDWTKAHVGWG
RAEWKSVLWSDESKYNLFGSDGVKWIRRPVGTRYSPQYQTPTMKHGGGSICVWGCFSAYGMEPLVRISGLMDRFQYESIL
ENHMRPFARQSIGRSFTYQQDNDPKHTSLHVRNWFNRRHVNVLPWPSQSPDLNIIEPLWEELERRLKGKFASNADQKFVQ
LQDAWLQIPQSTIDALIDSMPRRCQAVIDNKGYPTKY
>Mariner-1_Dro_tp#DNA/TcMar-Mariner 120-1232  [Drosophila fruit fly genus]
MTFHLLEVRLLRFKCQYVFVIGAKMSFEQRANIKFCFKIGKTFTETFQLMKQVYGDDCLSRSRVHEWFQRFQSGREDIND
DEHVGQPKSVITENSIETVREFIKNQPKSSLKLMEIELNISKTSIYRILTEHLGLQKVCARFVPHKLTDVQKLLRIQHSK
DIIKEAKKDPNFLYKIVTGDETWCFQYDPETKRQSAEWKAPDEPKPKKSRLEKSKVKTMLICFYDSKGIVHKEFVPPGQN
VNAVFYLAVLKRLVRRIRRVRPEYREDGSWRLLHDNAPSHRSTLVSDYLTKNHILTINHSPYSPDMAPCDFYLFGKMHLP
MKGKRYADVEAIQKACTGILAAIPGNELKHSFDMLLDRAKRCIEAEGDYFE
>Mariner-1_DF_tp#DNA/TcMar-Mariner 186-1211  [Drosophila ficusphila]
MEDQSEHFRHILLFYFRKGKKAVEAREKLCEVYGKDAMSDRQCQRWFAKFRLGDFGVKDAPRSGRPSAVFDEQIQALLDE
NRRYSTREMSEKLSVSHTTVENHLKKLGYVSKLDVWVPHNLKEIHLTKRINICYSLLQRIKNDPFLKRIITGDEKWVVYN
NVQRKRSWSKKDEPAQATSKADIHQRKVMLSVWWNWKGVVHFELLGRNETINSDVYCRQLSNLAEKIKEKEPALANRKGI
VFHHDNARPHTSLVTRQKLTELNWEVLPHPPYSPDLAPSDYHLFRSLQNSLNGKNFDSDEAVENHLSRFFAGKDQKFFER
GIMQLPERWSLVVEQNGQYIID
>Mariner-4_BM#DNA/TcMar-Mariner 174-1226  [Bombyx mori]
MELTRENSRAMIYYDFRSGLTQKQCVDRMISAFGDEAPSKTTIYRWFAEFQRGRVKLSDDPRQGRPKTAVTQENVDAVRK
LIEEDRHVTYREIQATLDIGMSQIQIILHEQLGVKKLFSRWIPHSLCEEQKAARVTWCVRTLERFHAGSSNAVYNIVSGD
ESWIYAYEPETKNQSRVWVFENELKPTKIVRSRSVAKKMVATFVSKTGHVTTIPLEGQRTVNAEWYASICLPQVVSELRK
ENCNRRIILHHDNASSHTAHRTKEFLEQENIELLDHPPYSPDLSPNDFYTFPKIKNKLRGQRFSSPEEAVDAYKTAILET
PTSEWNGCFNDWFHRMEKCVKFRGEYFEKQ
>NAVIMAR1#DNA/TcMar-Mariner 187-1214 via tfasty with Mariner_CA_tp, 1 frameshift.  [Nasonia vitripennis]
MEIPEGHFRHILLFYFRKGKTAAQAHRKLCSVYGDECLSERQCQNWFARFRSGNFDLKDEPRPGRPTVEKVDEILEKIEI
DRHISSRDIAMELNIDHKTVLNHLHKTGYKKKLDTWVPHELTSKNLMDRVSICESLLKRNEIEPFLKQIITGDEKWITYD
NNVRKRSWLKPGEASQTVAKPVLTRRKVLLSVWWDWKGIVHHELLEPGQTINSTVYCQQLMRLQQAIEEKNRPELINRKG
VVFHHDNARPHISLMTRQKLREFGWEVLMHPPYSPDLAPSDYHLFRSLQNSLNGVKLDSKEACENHLVKFFAQKPQKFYS
DGIMVLPEKWQKVIDQNGTYIID
>Mcmar1_tp#DNA/TcMar-Mariner 593-1615 gi|28460478|emb|CAD26968.1| transposase [Meloidogyne chitwoodi]
MDEKKRIRERLLHEFQLGHTAAEAARNIKKALGDNALDESTARRWFTKFRTGDFSTDDGFRSGRPSTFETEPLRAAINEN
PATSTRKLAEELGSSKDTVWRNMKEMELSYRSGRTVPHDLNEQKRQKRVEICRTLLQRQQTSPFLDQILTCDESWILYDN
RASEKQWLAVGQDANATPKQLHPKKQLLSVWWCVHGIVYWELLPLNRTITSEVYCEQLHRVQQQLRRPPYTVWARKGILF
QQDGARPHVSAVTRKKIEDLGWDILEHSPYSPDLAPSDYYLFSPLKDFLRGKQFSNEEEICTALKNFFDSKGPEWYRKGI
EKLPNLWERCIQCNGNYFYE
>AVMAR1_tp#DNA/TcMar-Mariner 90-1148 [Adineta vaga]
MIKKIVDMDVDVESKINLSHREVRVLLLHEFRLGHKATEAASNICGTMGQGLVSTRTAQRWFNHFKNGDLELDDLPRSGR
PMEVDVDFLKQLIEEDPRLTLRCLAEQLGCSHTTVEKHLNELGKTWKYGVWIPHELSAHQLQQRVDACMDLITSHRNYQW
LSNLITGDEKWVLYVNYTRRRQWLSAGQTGVATPKADLHPKKLMLSVWWGIKGVIHWEVLPNGYTITADLYCQQLDRVAE
KLKGKQDRVYFLHDNARPHVAKSTREKLLKLGWITIPHPPYSPDLAPTDYHLFRSLSNDLRDKKFDDESDVKTELVKFFD
EKSQDFYERGIMSLPERWQQVVDSNGKYISEN
>Mariner-12_SM#DNA/TcMar-ISRm11 160-1272 [Schmidtea mediterranea]
MARQINQFPASIANITEIVVESDNTAEPAIRNTFRVQRRNSTTSNADRDRVITAYDDGTSIVDISRILSIKRTTIYGILK
KYHNTGVVEADKRGGDHPQKLTEDQKNQVKEWVDDNCQLSLKVLVEKVFTEFQIRISTTYVYNLLSRFHYSMKRLHLIPE
RRNSTEVIETRKEYALNFSSILSIYSEQELIFIDEVGFNVSMRTTRGRSQIGTPATLNVPTIRSRNISIACAMNKNGLLF
YKSFNRALNKEKFIEYITELKEVLIDKEIHRCVFIMDNVKFHKSPEVLSAINNENTTVKFLPPYSPFLNPIENMFSKWKE
ITKRANPRNEDDLMRAIEIGSTLISSQDCSNYVRNMWSYIPRCIEGEIILN
>MARINA_tp#DNA/TcMar-Mariner 130-1215 [Endopterygota]
SVFCEATFVIVKKMEKKEFRVLIKYCFLKGKNTVEAKTWLDNEFPDSAPGKSTIIDWYAKFKRGEMSTEDGERSGRPKEV
VTDENIKKIHKMILNDRKMKLIEIAEALKISKERVGHIIHQYLDMRKLCAKWVPRELTFDQKQQRVDDSERCLQLLNRNK
PEFLRRYVTMDETWLHHYTPESNRQSAEWTATGEPAPKRGKTQKSAGKVMASVFWDAHGIIFIDYLEKGKTINSDYYMAL
LERLKVEIAAKRPHMKKKKVLFHQDNAPCHKSLRTMAKIHELGFELLPHPPYSPDLAPSDFFLFSDLKRMLAGKKFGCNE
EVIAETEAYFEAKPKEYYQNGIKKLEGRYNRCIALEGNYVE
>Mariner38_CB_tp#DNA/TcMar-Mariner 170-1141 wised with Mariner4_CE and Mariner2_CE  [Caenorhabditis briggsae]
LSRPQVRLLIFYKXSHDTCATETAKKICQVFGERTVTDCTVRNRFASFESGDTSLEDNPHTIQNLLXFDELLLEAVREKP
DETTHELXTMFHCDYHIINNHLHKLGxRRVMAQRVPHDLFISETDLNESILLTPQRKEFLADLLTGxESWILCNNNTHHA
IWIXAAATRQVQPKXDXHEKMCLLRASEIXKGLLFFELIQQGTSITASTXRYQLDSFAIALREKRPRRSIVHLLHDIARP
RVTKDTQAKLQKLGGTMVFYFXYSPDIALLNYHLFRPLKQFLREKQFKTLNQLKMAVSVFFHSHTPEFWKTGIEXLPNRW
LTVVN
>Mariner5_CB_tp#DNA/TcMar-Mariner 176-1183 wised with Mariner4_CB  [Caenorhabditis briggsae]
VFASNNFHFWTTILFVFLSDLRLAEINRQLVEVNNEDAPFRTNITTWIHQFEKXEFSLDENPPSKKQTGLDLDALKTGIE
RDPSQTVRDISSTSVASLSSKSHKLETLGKVKKVGRYGSHLLAQRNFVSRVGTCLNLLILRCTHECWNQIITSGDKWVMY
DYNKQQSKWVDKGTQPPDVPKREIHVKNGMLSVWWSTXGVEYWELPDNGVTFMTDTYSCQVTXTQTPCGSPLERNTKVYF
QNXNSQPHAGRKTQTDLAGYGXTILSYPQYSPNLVLSDYHLSSHFXVILIXKKFTSKHDIKNGLXDFQFAXPEFWKEGIH
NLVGRWQIVIDNNGHY
>MuDR-1_EPa#DNA/MuLE-MuDR 446-2445 via genewise with ATMU13, 2 introns (1483:1561, 1977:2089) [Eutrema parvulum]
MALVNRDGNGDDDFDEETEEREEFQIEQLVEEFEDETPINHDELPESESEDEEAAPQRALTHIRRGDGRLYKDQTFFNGV
AFKECVIDYALRTGRNVKQYRYDKDKIGFRCVGVCSDSERIIQGCPWKIYASTLPNDAMWKVRVFVDMHICVPNGQCEMF
KVPVIARLFLDKITEEPEYYMPMKLEDFVKERWKIVVSRPQCQAARNKALRWIESKHDQMFARLQDYAAELVSSNRDSTV
EIDLMKNAEDQDVFNRFYVCFDVLRRTWKESCRPLIGVDGCFIKAKMKGQVLVALGRDADNAIYPIAWXVVQVENTDNWL
WFVRKLKLDLXLNDGDGYIMISDRQKGLIKAVKLELPKMEHGMCVRHIYANLKKNHGSKKYMKPFIWSLAWSYNEADYKE
NLDRLLNYDSGVYEDVMKTDPRSWCRAFYKLGNFCEDVKNNSTESFNNTINKAREKAFVPMLETIRRLAIVRIARRSAIS
HDHQGVCPPYVTKFLQSQHKRAAECIISRSTNGLYEAKLLGCSYRVNLERRSCSCMKFDICGIPCEHAYGVILVKKLVPE
DFVCHWFRTSTWRRNYEEDLVPVRGARFWPTTDAPNVHVPPEP
>Sagan-5_MLP#DNA/TcMar-Sagan 101-3040 via genewise with Sagan-1_MLP, 2 introns (1303:1592, 2839:2903), 3 frameshifts and 1 stopcodon. [Melampsora larici-populina]
MXFCFHFPHLIXTPTSFDRHFHSLIQSENPHQHHGEGKQSCKGSKKTMEEPxKGQTPGQIPNRKTDQLLTEPSIQKFQTH
LMPKPETMKPSNPVIMLSSDSNPDAEDLQTPQPPQSVILQPPELYWMPIDPDYQTEEDDMDPLGIPLYAQPDIADSSDDE
ACNTDLVKEALFPVFTRPSFYQPILGKRKTKDGRTLKGYKQPRIQINSKRLAPQIIPKETKRRHKKNREKALGKSKFSMK
DWIFKNPAPAPAPAPVPSPPPSLPDIETDESSEIESYQPSEDSPETSDNEIEDEDNNFSVSGALNLWINSCVDQYRNSKK
DQSVPKDIQKEAQDRYNSLNEDITYLEKSTSKLKKNNQHSNTHQPSLTTSENTIHDVLSSLSKVKLIQPSLLQSSHQPPR
SLTPLSFLHHVNNVAIPEHGLQKTICLNTAHRWLHCLGFRAREYSKGLYFDGHEHPDVVESRQKYLETVETLQKQSRTYL
GEDLELSIAPDPLLLQGQKETIFLFHDESTVHANERPKRAWVKDGVQELRKKSDGRLIHDSDWITPATRTGRLEITSEDH
HGTLPMPLFDDAAVVTYPGTKGDPWWDCAQLIDQVRTRAIPIFEYLFPNAQGVFIFDCSSAHESYGPSALRVSNMNLTPG
GKNPKILRDTTIPTDDPRIPVELRGQPQSMVYPTDHPDPKLAGLTKGVRCVLAERGLWSLYEQKVKQEGKKTVFRCSSCK
LSNTKRDLAAxEGRLQREKEAQEAYENGDNPATPNNEEPDDPMCCASKVLSMQSDFANEKPLLQMLIEEAGHICLFLPKF
HCELNPIELYWSFIKYHYRVNSFQCKTFKESKALFEQIRKRCPVSTIRKYFRKVDRHMDAYR
>Sagan-1_PSt#DNA/TcMar-Sagan 208-3121 via genewise with Sagan-1_PGr, 2 introns (1452:1517, 2815:2882), 1 frameshift aand 3 stopcodons [Puccinia striiformis]
MAATPAQLAQRRRRRGEIKQKQERGEVTGRRPKSKRVSEDDQLSIEDKQHLTIEDDSPIIIEDDLPIIIEEESPNAIKQD
SPIVIEDNSCDEDEISAYQEEEIKISNQANEMFQYIQAGIDDETSDDNIPDSDDEHVESFWPIFSEKFQPVSMLPAARQL
KSGRVGYQKPVENPNSSSKKLVPFQKPSSTKHDQKKRRLKALGANNNMMANYVITTKIPKEASNIDPISTHQLLIAFQNQ
ATVIVxSNPALPPSTKTIVQHRGKLIxRNSEKKKLKTNGNSLTRLxTLWMRVSQDKKKKDSSFQYPHVMMSDLREFNHLR
REYTIGLVSSPSFSAALATSKSSIRRRKTTGNNQNKSTSGIYLARLISNQAQHVVDHKELLHIARGNHSNHKSMLDNIDI
RKALITWSASQTPGTVTPLSFQKYVNEALPGQFDIERTISRDTATHWMLKLGFSPSEYKKSLYFDGHERPDVVESRKKYV
DDYNSLRKYSRIHVGDNLDVLSEVDPDILGDNRETVFIFHDESTIHSKERPRQAWLLPGTTELRSKNVGQLIHISDFILE
TTGRLCLSSEQFENLQSRGGEAPESPDAATIIYPGANKDKWWDMEQLCHQVSTKAIPIFETLHPHSQAVFIFDCSSAHGA
FAKSALRAQNMNLKPGGKQGRLRDSIIPSDDPCIPTHLRGQVQSFCFEDSHADPQLAGQPKGVQVILQERGLWQYYTAKA
KDENKPKLNFRCATCTTSNIAKDAVQRSAKLIQQAEENGYYLTPEQRVDQSSTSLPPESIPEVPNPTSNNIDPSCCWSKI
MAMQSDFVNERPLLQAIIEDAGHACLFLPKFHCELNPIELFWSYIKQAYRKQSHLCKTFPQSKALFEEIRKSCPLISIRR
YFRRTDWQLSIYQLGYSGPASPLLMKIYKTHRCISREAASKVDQTTS
>MuDR1_SM#DNA/MuLE-MuDR 323-2236 [Schmidtea mediterranea]
MFFYVKSLFIINKIKTNTELIMANNFAEVEDYQSDLEFDVEVTSLKKPRAKKVSKVWTHEKVFKSAEEAKNAIKEEKIWS
YSYSNKTEEGKKVYYRCNQVKFKGKQCDSALHLLYDSRSDEVILFRAEAEHKHEENMSKSAISNEAKELIKELFKLKIKP
KRMLEIFHERGIKPVPTTIQLRNQLNKIRNEVYGPPVISLGELENWLQSSSSIPELEDEAFVVNYKITYADEYECEESNE
ESDEDEENHGSKFRFFISTIRLLKLASASTILNADATYKLVWQGYPILIIGTTDLDRHFHSFGLGICTNEKTADFNFIFS
SINIGLKKINASLFNPRVLISDASNAIRKAYSQVFNKNEIVMCWAHMRRNCVKKIESLVAKEDQNELIEDVDQLQLSQSQ
VIFEKASSLFVKKWRQKKATEFLDYMNMMWLTTHNTWYEGYMPFTPSTNNNLESNNRVLKDEETIRERTPLSRFSKQALD
IVKKWSLAYPRSLKEFITKQSIDTALWTQSYQWAKESKAILSVPQEQSTNYYVSASDATITQEDIDKVEKMRWTTFDQFT
KRAFTVWRINLPNDKANWADGQCNCPAFLKKFICKHVVGISIRLKYCKVPAVAKNTSIGSKLPRGRPTKAKKALLKQ
>Sagan-7_TMe#DNA/TcMar-Sagan 393-2686 via genewise with Sagan-3_TMe, 2 introns (814:930, 1219:1286) [Tuber melanosporum]
MPPIQQKRKRLRAIGSQGGFSKKLRQQSTPLDSNESQDEIAAIEGEENAVGQEEGVEAMENTPQRRLDTRGYGSACSPDR
IKGLSRSTLWRRAQKEKENQQQQNALVGEGIEANWEDLESHVEEKWPMVSKDLRAMVLKKAICSISDLERYFQVLQFMNW
QLKCPDLPRKMAALNTAIGWGRSKHTAESIIRWEKSWIKTRTIVLSQRGKHAKSQSMLNDEGTMMAVREYIECAGENISG
PGLARAVTEYWTMRTSQQDAEIRVSCIYQALIEKQTQGRMSLTASTAIRWLKKLGFEWKEVRKGVYIDSHEKPDVVFYRQ
QCFLPQWKELERRIPKWNPSGTIENTLLPAGQRLLIPVAHDECTFHSNDGVHHQWVHKDKHLIRKKSKGQGLMVSDFILP
CNRLEMLSTVPLPSLLQTRNLEPVPGLKINPRQATEYIRVGKGTWWKGDNLIDQVLNIAIPIFEATFPNAQALFLFDHAT
SHTADAPDALRSSHMNMDPGGKQPHLRDGWYYEPNGVTLFYQRMSFDPNDLSIPAKWRGMPKGCKRILQERGIWPEGGLR
YDCKSRKNKKDQSHSGNSCCARQLLSVQPDFLAQKSRLQEEIEKRGHLCLFFPKYHCELNWIEYRWGRAKWFTRKNCQYN
WPSLIKTVPKALQEIPSLLLLKYWWKSTRILDAYYAGLQYGTSEFTDIVYKSHRRVSTAQGSI
>MDR3#DNA/MuLE-MuDR 826-4085 via tfasty with MDR2_tp, 1 frameshift and 3 stopcodons [Oryza sativa]
MDRLVRLHYGGSVVEQSNSGSNFEGMSVKQLIFGGKPSFEELVCRTKDVLGWSNQSIAIQGRYDVGAGPISHKYMLDLNG
ELEWNTYVDIVLGSxFKSLEVVASKLDRTDCRDDSFDLNRTLFYDEPNYEAFDDEGDMKSQSVKSLTVEEVIESQGMGVD
VNMQKKEAADANERRSHESERVEINVELQKEEAVEANKSSRLESEGVEINVELHKEEAIEVNEARSQAVPIVGNHVDDDN
EVADGSMGGGGEERTTDAQLASLVRFCFRDKIYTRRECEETLLMNGLSVDLLHEHSEEYDDTHEEEGYEVEYAVDSDDDH
PVAKMSQEEREVFEKLVGRNPEVVQFEDVSNSELAVVDGGVTYNGIIDAMGEEPKKGLEFKSLELLQIWLQSYSISVHRP
FHVKHSNASKKYTVACIEESCExQVRARKTKDGRWRVTGVGKEHTCCSAEASGKHLQLTSKFIGNRLQPFVRAEPTLTPA
AIVEAVEAIWHYRPSYGKAWRAKQVAMNNIWGDWDEAYVRIPMLLNAIKAKNPTMHYVVEPHPERSRPVDGVMRRVFGRA
AWIFGQCVEAFNHMRPVIAIDDTFLTGKFQGTLLTAIGSDAGLQLVPLAFALVERENNYNWEWFISMIRRCLIGPKREVC
IISDRHQGILRSINNVIPGHRPIHHRWCMRHLCANFYSAGATQIQMKDLERICQINEKSEFKKEVKHLIDFLEPRPKKWL
LDIMPQRHKWARSCDPGGRRFGFMTSNMAESFNNVLRGIRRLPVTAIVAYTFSKCNTWFVDRHKFVTAALQKREKWPKRI
KKELDIQKARTLGQRTTCFDFPTAKYEVTEQGGVTEGGVQWGGRHYTVVATANTCTCQYPELHHMPCSHMFTVCRLRRMD
AEAPPRICFEASNVALQRTYSPRFEPYLDPTQWPSYDGEVFVPDLSKMIVTPGRRRTKRFINDMDRGYKGIGLGWSQKPN
DGNSERVVPNRCSICHKVSHKKTTCPKRDKSKDRPRKRRRTCRGGEGPSTQVVRMHSLLLFHCIIHICMSIISVKFTICL
LLLFPLIFTCFxLLFSICRMAQALALEPQYEERHRARRIAEGGVIYY
>Mariner-5_NV#DNA/TcMar-Pogo 109-1470 via tfasty with ATHPogo_tp, 4 frameshifts and 1 stopcodon. [Nematostella vectensis]
ASKRTTSEKFEKINNLLWDWYVRARQANIPVDGPMLREEARIIAEKLGDTTFKGTDGWRSKWKQRHNFARMNIVGEEGDV
RLETIESWDERVKELMRDYQPSDVWHMDETGTMWKALPDKSLSEKGKRCKGGKHAKQRITAVLFVNAAGVGGGRGEEQPI
LIGKSKKPRCFANTAISHPCGTQYFYNGKAWMKSDIMITVLKNEKMKRAGRHIILFIDNGHPKSLKNMFSNIKVEFLPAN
TTSRTQPLDAEIRLRRKLLRHVAAARLIIRNPPGEIVKGVNLLMAIRWMANAWDELEPEIITRCLKHVGMYPEHNETMDF
DDDPFAGEEMLEMKELLAKISESSGEGLDLDEQASTGxYHVAELEEGSAPLKDDDINEENDDSEDEIEDAEFDIPLRQPE
IASAEGCLIHVNKLLDFSLWQNNEKLTALFVAAKDILIDEKLKSSMQTSITSYF
>Mariner-3_AN_tp#DNA/TcMar-Pogo 89-1762  [Emericella nidulans]
SYLALLCNPDPRYIENHIVYLKSHSYWILHQYMAPPKKLSDVQRKALRDWVHSQSPRPTQKACIAWFQSRYNHRLSQSTV
SDILSQQYQYLDSECNPSSATRKGIGQWQDLEAILYEWHHILDCKGAYITGDILIEKARQIWSSLPQYRDQPLPAFSSGW
LHRFKTRYNIKQRTYHGEAGSVQEEAEKEMKAIHIFAGKYNEEDIYNMDETGLFWRMPPLQSLSSINRPGIRKDKSRISI
ICCVNASGSDRLPLWVIGNARTPRALRNINISAIGIRWQWNKKAWMNQIIMREWLLDFYQHIGQRSVLLAMDNLPAHLSG
LELAPPPPNVRICWLPKNSTSRFQPLDQGIIQNLKIYYRKQWLRYMLSYYERNLDPLQSVTILDCIRWLVRAWHHDVQSS
TILACFYKSTLVQDPIELPVEAPDLRPLYTQVQQSGRLSDCMDISFFLNPAEESPEPISSGNEISSDALLEQLIAEASGN
ADIYPNNLDDDSGEPAPLPKPQDALDAVRLLISYMEGQDTSKTPILRSLERLERDIEGEIITAKAQGTLDSWLSNAR
>Sagan-1_ALai#DNA/TcMar-Sagan 248-2359  [Albugo laibachii]
MLIKHDSIVKCTDVNNHREEDSGNNDNRGTTNEDNNDSWNINNSDSSDIGSGYETNDDEEEVTHGVAENIERAFNAALSA
RSNLENPTRPARYIGQSKRTQRRKNAAFKRAAVGTKPLTAYFIKQMAEHEQEGEEDSQQDDSAESSESNNNTSNWTDAKL
SASIEKLKAMKEKGKASQAAQNRNDAVKSYLCLVKAGFKRGEASKIIAEGAGRGIYFARSICAWAAMFMNDGQLPISLWG
KHAKRLSYLKDEDCILRLQHYLRKNKFKIDISELTAHINESILPQLGYAPSPTISEKTTKRWLKSLDITYRTVTKGIYMD
GHEREDVVSYRVAFLKKMEAFESRMPFIGDGDKQLEETKIIWPKEDVRPLILVTHDESTFSAHDGLKRLWMPIGEQPLRK
KGQGRSVHVSDFLTYVTGRLALDEEKRNQYPDLPAEACVIINPGVQHDGWWTAQDLYTQVRDKAIPIFEAQFPGMQALFA
FDNATSHNAFAPDALRANCMNLSSGGKQPKMRRTTWGAGHIQEMVFSESHPNQELRGQPKGLKVVLEERGLWRANLKLQC
KSXPQHGTDSCCARRIISNQPDFQAQKGMLEELIVEAGHYFISYPKFHCELNFIENFWGSAKLYTRKNCDYSWVGLQKTV
PLALASVSVNEIRRHARKAQRYMDVYRKGLTGRAAEYAVRKYRSHRRVPSCILMDINTLTSDTS
>MuDR1_ZM_p2#DNA/MuLE-MuDR 4293-5021  may be spliced into; similarity to MDR1_p2 continues before an apparent intron. [Zea mays]
MTVTLEDCQKILGLSIMGRPVTGQASPGGWRQRVEAFLGRLLPDELRGSHNTGVPLTWLRQSFGQCPPGADEQTVGYHCR
AWILHLFGSVLFPDATGDSASWMFLPCLTDWDTTGGYSWASAVLAFLYRQLCEACRRSSRTASLGGCVYLLQLWMWAHIP
VGRPREFPPREWFVVAGHRLKPTAAYRWDQVEEPFARHQRAYVEYSNELDALTPSMVSCLLFSFYMSFLLLSHDTSVLTW
AF
>Sagan-1_PMa#DNA/TcMar-Sagan 475-1290 (fragment) [Perkinsus marinus]
SSERCLVCYNERCLVDFAECSEAVKTLSEGKLGCVFLTDRSPIHCKYPEDGLNAKAMNVKPGGKQPRMRAGWYERDGRRV
VQEMVFPVDHPRYAGLPKGLRQVVLERFGEAAVVGKKQDELVILLSNCDDFASQKTPLQEEAEARGDRVIYGVKFHPELA
PIEAAYRSIAKAIRIGNSSKSSAGFVQRVERCQEPADLTLLLIRKHFRSSREYLKSYMEGVSLEEIKRLRKPFLESLSSL
RKERRKHRGPAPMLPAPTGQSNVGKFNRRRVV
>SMAR29#DNA/TcMar-Tc1 270-1272 via tfasty with Mariner15_CB_tp, 1 frameshift and 2 stopcodons. [Schmidtea mediterranea]
SDEVRSIARKFKAEGKSYGEIAKLLNITKNAVVSLIKYENKVHKKKTGRKCIINNTEKTSVKRYINEQNKEGNKISCSSI
IRNLNLNISRRTINNFLLRTEASYVKHSQKMILSQLHKNKRVEAIRLWIKSNIDWTKVVFTDEKRFSLDGPDSWxHFRLI
xLFNDFWSTWTYSKEKINRYRRHSGGIMIWGMVMANGLIAIKIVTGGFSAESYKNLMDTYALPIMRLNYQKVKMVQDNAR
PHVAKTTLKYFKEQNIDIIDWPARSPDLNLMETVWSMLSQDVYSLNQPMNKTDLEERILRAVDRVNEERRHTIQHLFDSF
VDRVISVLQKRKYV
>Cmut3#DNA/MuLE-MuDR Candida gi|46434902|gb|EAK94298.1| hypothetical protein CaO19.3726 [Candida albicans SC5314]
MSVSDKYPELVRQFFLLDEVKEILPNYPKYKILSQTPEVDREYYKNITSPEFIRQWQPEVLNHYRNNWTEVTPLCAIVHD
RTIDAGLRIQKFFHPSILPNELHGDVWISVKENKEELDAFIENVQCLQNYVRDSSNSKYTYYRCEYCKKNKGVKSKKTDC
KHKIAVHALEGGKYKIVWHFQHNHAFDPRRITKATRNWLMDLASTNIPRASSDSRRSVTKFKSSSFLLSDKFKISNKVFN
YYKNKNKESQAHLDKNVIKSLKIWVSYINTLNEFAVFKKRSTNTENAEFCDVEGDASNPESTWYFGIILLSNLQYMSSPQ
TVFLDSTHKLGHGPHNEDIITYIFITKSSLSGGGIPIGYLITNRESHEPLASFLRFFVEKKIQIKRFVIDCSATEIKAIE
EGYNVGIIEPTDGSSSAGDKFEAIITFCTWHCLRAFNKAIKKGITIQNRTNNVQIFPNEIITEVDGEMTDEEFINQIATQ
GVVAQSNLTAGRNKEEIIANQRIALSYMVELKRQKTIEEANDFLHVIEATFREYPDFVAYAQKTSKTTGKYWLNCHFGNY
RELTNNCVESYHQVLKTKYFERRRKYRVDRVIWMFIETIAKYYEYYHSAVIVTSSLRYIDKAEEASKLKAEAVSDEDMRQ
MIVDLPGYIAVKSFNGSNYYKISFGERGIFSCECPYNEYSIDWCKHIFLYKRYKVAKGLDIPIVELERNPLADLSGLNGT
NEIVERETDTIGNESEDEELVDSESGFKNATYNESDFGDDNFDSMENDPDGDEPDFSIENTEPTEVSQEETEEEIGARLA
RDRVDPGFSIDDDNIGNDFELADSSQVFTDGGTAYYTQNTGSDPFIEWPISETIDSQESADVILEIESIEGVYAKKAARN
IKQREENYSSLDTEVKRIQDEEKSQREKVKKLRALIKKEEMEHKKKMAAVNRIQKKRNKEKELIKTQKKALAEIQRIERM
IRDNNYSEEEEHEKTEELKRLYHSTMLDSNRKQSRY
>SMAR18#DNA/TcMar-Tigger 499-2317 via tfasty with Tigger3_tp, 2 frameshifts.  [Schmidtea mediterranea]
MNRQISTAEKPTLKRKFITLDDKIKILDRLSSGEKAALIAKSLSLNESTIRTIKQIENKIRNSVIAGSSISTKRVARVRD
LLIEKMEKALMLWIEDSCYKKMPISTNAIKTKALKIYAHLKESNPDAVLVTKASKQEFLASKGWFENFKSRFGLHNIKVQ
GETGSADVEAARVYPKTLAKIIEEGGYKGEQIFNADETGLNWKKMPHRTYISKNEKVAPGFKAAKDRITLLLCSNASGDY
ITKPLFINRSLNPRALKNVDKSKLPVYWRANSKAWVTSSIFRDWFLNCFVPEVENYLKIKNIDFKVLLILDNAPGHPKDL
NHPNVEIAFLPPNTTSIIQPLDQGIISTFKAFYIRQTFQLILDKMDSNPNMTVTELWKNFTILNCIKIVETSLKELKQST
LNGSWKKIWPEIVAKNNPVPPLRVEVSRILTLGQRFSGEGFDDMNEDDIYEIMNEGTELTETDLIQLTTESPSVSNLAQD
DVTSVEDISESIPSFTLKCIREGLSLVEKMKSFFTTNDPSLERSSKLMREIDINLAPYYEIEKQLKKHTHQKLITDFVII
KPVEEPQSPTTSFLSNSENYVEEISSDEAIAPPKRPRAKIFEDSETD
>SMAR28#DNA/TcMar-Tigger 345-2030  [Schmidtea mediterranea]
MDKRKRTMLSINQKLEIINKLASGVPVSRICEQYDIKKQTVSDIKKNAERINKFALLCDVGNMNNERKKMRFAKNALLEE
ALMKWYIQQRSCGIPVRALELKTAVIKLGKYMNINIKASDGWLWRFRKRHGISNKRIYGDAMSCAVEEIEPFRQMFKDFM
TAKNFSKFQIYNADETGLLWRTLPENTQAYNFDKNTPGRKSCKDRISALLCANADGSHRLTPVIVGKSCKPRVLKDVMHS
LPVVYYNSKKAWFTSEIFKNWFFNHFVPDVIKFQHEKLGILPAEATGILLLDNCPAHPSESILRTPDGKFTCMFLPKNTT
ALIQPMDQGIILATKRIYRKKFLDEVMVVCLNQKEEEDTRGQRTVQNLKNYNIKSAIFNFASAWKEVKELTLTNGWKNLF
NGIDEDIDIVLDGIEVRDFYEVIQNNGETKVAEDDVYEWLEIDEDDPGYNIMTEGEIADLLINEQNSEKSESTTEENTPR
RVKISTIASHLADLIAFIDTSPDSDFQQYSMHFRLFRELIIKKQRALLKQTTLDSFLITSSCPKQLDSEKTNFQDEKRDN
N
>Tigger17_tp#DNA/TcMar-Tigger 113-2092 [Eutheria]
MRRAAKNLSRPTRTFPAEVEQGDALPSCFSSHTVNKCPFRGLFSATFFAFLCFLLVISLFKMAPKRSAEVLSSVPKRKKA
VMCLTEKIRVLDKLRSGMSYSAVGREFNVNESTIRYIQKKEEEIRRSVREAAPESAKVTSIVRDEAMEKMEKRLNLWIHE
MTTDKKSVVDSIVVRLKAKEIYGHVTQGQENVKPFSASAGWLARFKRRYGVKNVKLAGEAGSADQEAAEEFXKYLLSVIQ
EKGYVEEQVFNADETGLFYKDVGKRTYITQMASKAPGFKSFKDHATLLLCANAKGDFKCKPLMVHRAQNPRALXGKNLNR
MPVHWRWNKKAWMASEIFWDWFHNCFIPEVERYLQGENLAFRVLLILDNAPVHCREELENAHPNVEVLFMPPNTASLIQP
LGQGIIKAFKAHYTRELYSKAFEALDANKETTMMDYWKSVTIRSVIDYVGTAWDSIKQATIDNCWENVWPDCVKNLKSEG
VTESIKNSVKNIMRIARQISGEGFDDMKEEDVEEILAEKAVEPTNEDLDEMAKQGIGVGDDEDGDESQPKTPRIVPLTAA
KISEWNSALEKIFSDMEECDPMLDRSLKFKRLTSTAFIPYAETLKDLRRKAKQTRLTQFFEPVWEGKSPTPSTSYESQTP
EVELPDVDMPPSPTSSSSAE
>Tigger7_tp#DNA/TcMar-Tigger 320-2245 [Primates]
MAPKRKSSDAGNSDMPKRSRKVLPLSEKVKVLDLIRKEKKSYAEVAKIYGKNESSIREIVKKEKEIRASFAVAPQTAKVT
ATVRDKCLVKMEKALNLWVEDMNRKRVPIDGNVLRQKALSLYEDFSKGSPETSDTKPFTASKGWLHRFRNRFGLKNIKIT
GEAASANEEAAATFPAELKKLIKEKGYHPKQVFNCDETGLFWKKMPNRTYIHKSAKEAPGHKTWKDRLTLVLCGNAAGHM
IKPGVVYRAKNPRALKNKNKNYLPVFWQHNQKAWVTAILFMEWFHQCFIPEVKKYLEEEGLEFKVLLIIDNAPGHPESVC
YENENVEVVFLPPNTTSLLQPLDQGIIRFVKATYTRLVFDRIRSAIDADPNLDIMQCWKSFTIADAITFIKAAMDELKPE
TVNACWKNLWSEVVNDFKGFPGIDGEVRKIIHAARQVGGEGFADMLDEEVEEHIEGHREVLTNEELEELVESSTEEEEDE
EETEAEPAMWTLPKFAEVFRIAQTLKDKIMEYDPRMERSIKVTRMITEGLQPLQQHFDELKRKRQQLPITMFFQKXSAKN
LQLSRIPNHRHRLLLTSNHRHRHGSMIQDHPKQMILLLTYRQKVNSSLTLRHNAYVIHLTSSHHVGIXSSHIITRRRVST
VQ
>Tc2_FR4_tp#DNA/TcMar-Tc2 222-1464 wised with Tc2_FR5 [Takifugu]
MAPCKRHAYDAEFKLKAISHAVEHGNRAAAREFNVNESMVRKWRKQQDDLRQVKKTKRSFRGNKARWPQLEDKLEQWVVE
QRAASRSVSTVTIRMKATALADELKINxFRGGPSWCFRFMKRRHLSIRTRTSVSQQLPEDYQEKLATFRAYCRNNITRKK
IRPEHIINMxxVPLTFDIPVNRTVDKTGAHTVNVRxTGNEKASFTVVLACxAxGxKLPPMVIFKRKTVPKENFPAGVTIK
ANSKGWMDEEKMSxWLREIYVKRPGGFFHAAPSLLXLQVKHTNSVXCLIPGGLTKELQPLDIGVNRAFKARLRTAWERWM
TEGEHTFTKTGRQRRAAYATICQWIVNAWADISVSTVVRAFRKAGIVTEMPDNTSDTDPDDDFDETEPAMLDAVFAQLFN
SDTEEEEFEGFLDEE
>Tc2-1_TN_tp#DNA/TcMar-Tc2 is gi|47211221|emb|CAF90362.1| unnamed protein product [Tetraodon nigroviridis]
MPSEVEHKVMKLQKFVIDLRKGQQFHLGAIGHMDETPMFFDLPGNRTVDLNGTSTVPIKTSGAEKQHFTIILSCLADGIK
LKPAVVFKRKTMPKEKLPKDIIVFVQEKGWVDERVLFGWLREVWFKRPGALLNGKSMLVWDIFHAHLLDSVKSELKRNRT
YQCVIPGGCTSLLQPLDVCLNKPFKVPMRQKWNEWMVNGEKQLTKVGNLKRLELATVCQWIVDSWNEILSDMVIRSLLKC
GISKSIDGSEDDELFSEFIGSRDDVELEENTEECDFYDDGLSEEQFCKLFGDSNNEDFEV
>Mariner45_CB#DNA/TcMar-Tc4 460-2213 via tfasty with NP_501949_tp, 1 frameshift and 2 stopcodons  [Caenorhabditis briggsae]
MSKFRRILTYILDLGVNPKRQPLDEEDLKLAAYLIDLGESIDKGDFDIEMEQHLSNFEDDLQDLSKFQFSESLHIHMLRL
GWTPEDDECHKIQMYPDVVHLPGKPNMIQFANGEFVELDKVKEAVAYFGSKTVLNNNGSKVRPSLEQVHTKFRFIRNRNH
MDKLREYETLGKNFLLFFFLKxIFxGSTKANRKSNLEFISMELEKEVRMHIENGKILHDSVLRFLIAGIIKKYKIDIENF
IGSESWLNGWKARFGITSRKITKFVSTIRHKTRDQIEKDSKEFVTAANQVFPLYHPSNIYNADQSGFQIEMHTARTLTLK
GSRNVHCVVGSESSTTHSYTVLPLISASGKLHPKLFVTLKEPKGQFPQKGHFQASNLEVTCHTSHIMTKELMKVFFQKIV
FDSSMPKDALLIVDSWNSWKDTAAIDSVTPSSHKLKLLTIPAGCTGRIQPCDVGIFGSFKKVVKTLTNYAQLTNSNYKFQ
TRDETLRGQLPICQTVQKMSLQLLSLVWRQLCSPKLEKWARYAWVAAGYDVPRPASFETPAQLLFPRGVAGDCTMHGCSS
TSFVKCLYCEKLFCFEHFVIDHHNC
>Mariner-2_Crp_tp#DNA/TcMar-Tigger 385-2022[Crocodylidae]
MSVSNVARKYGRNESSIRAIKIREREIRQAVASSAPITAKVTSQVRDKTLVKTEKALNLWLEDMNRKRVPIDGNTLREKA
LSLYALFKPPAEEGQPSDEKEFKASQGWLNSFRNRFNLKNVQTTGEAASADEEAAKAYPEQLKKIIEEKGYLPEQVFNAD
ETGLFWKKMPNRTYISKSERQAPGFKAAKDRVTVLFCGNAAGHLIKPGLLYRAANPRALKGKNKNLLPVFWQSNKKAWVT
AALFLDWFHKCFIPEVKRYLEEKGLDFKVLLIVDNAPGHPEALRFAHNDVEVVFLPPNTTSILQPLDQGVIRCFKATYTR
LTFSRIRSAMDADPNLNVMECWKSFNIADCITYIKQAMDAIKPETVNACWRNLWKECVNDFKGFPTIDKEVKRIVQVARQ
VGGDGFVDILEEEIEELIEGHRETLTNEELEELIKSSTEDEDDDDEQEEPASWNLHKFAEVFQAAKHLNDLISEYDPSME
RSLKITCSITDDLRPYQEMFEQLKRQQRQLPITMFFKKKQPAADEPTQSTSRAEPEPTTSSTTRSP
>Mariner-2_AMi_tp#DNA/TcMar-Tigger 587-2062[Crocodylia]
MERLLILWIQDQTQRCVPLSLATIQAKALSLFDTVKQQRGEGSKDEKFSASKGWFMRFKGRYALHNIRVQGEAASADEIA
AQDFPKKLAKIIEEGGYCARQVFNVDETGLFWKKMPSRTYIAQQEKTMPGFKAAKDRLTLLLGSNAAGDFKLKPLLVYHS
ENPRALKGYVKGSLPVIWKSNRKAWVTGALFEEWFTDYFVPAVQNYCERNNLAHKALLILDNAPGHPAHLADLDPNIKVV
FLPPNTTSLLQPMDQGVISSFKAYYLRRTFARAISITDQEGGPTLKEFWKGFNILDAVKNIGESWKEVKESNLNGVWKKL
CPEFVSDFQGFEDQVDEVTADVVKMAGQLQLEVETEDVEELLASHSQELTNEELVRLEEQRKAENQAQIQESPAQGTMTT
KQMSEAFKHLEAAMAIFEKMDPNLERSSKTNNLISNAYACYREIYNEKKRAAKQTSLDQFLKKPSSGPKSPQKSPQRSPF
HDPGEGVPSPSD
>Zator-4_HM#DNA/Zator 760-3816 via genewise with Zator-3_HM#DNA/Zator, 1 frameshift and 2 introns (1094:1469, 1744:2060) [Hydra magnipapillata]
MTKMPRGNEKKYLQFLELYKKAYSTLEKQKQYQQAQELWKIVKNNESLYEKKINELKEKVTKSKVSLMSFWGNTISPPSK
KKKDIHPAPSSSNETRSFLNATTTEPARIEINLFFYIQNKLISSNCQEFIIAYFLAFFNLDLTDNKKERENPAQVRSRKK
ISDLESQRASLIVVRDSGLSTVTKEQINTVKETIRKEKTKLDRLIRESARQRKRRQKLKESIETVCQNIPEASSALKQFS
RNHTGRPRLEVDQPELLSTIIKIVQNLSAADERRRTECLRSVSTLDDLQEELTKIGFTLSRSGLYLRLLPRRGNTSEGKK
HVSTVPVKLLRPENSMRXKNDDRMFAKSFIDDMFEVCKLFGPKAVLFISNDDKARVPLGIAAASLQAPLLMHMEYKVKLM
DHDFVVSSQHKLIPSVYGVCEVNNTGNVSYSGDTFIRIRSAKHDTSNAFTHAFDVRELFKTELVKRRPIMLMETDGAQDE
APRFPKTLATAVDLFRLLNLDALLHGVNAAGLSAFNPVERRMAPLSRDLAGIVLPHDFFGNHLDSSGKTIDYELEVENFQ
KAADVLSQVWEKTVIDGYPVHCQAVPVGKAYEPPIPDPVWVDKHCQQSRYSLQIVKCQEESCCTPFETNWLKNFPQRFIP
FPAIYEYCENGYKAMEPSRYFKNVSKQSTFAPLTHRLLLHDIPIEGLKYKIIPFDLYCPSLKEKLSNGICDKCNKYWPSE
AAMKRHKKAHTQKKNTVEMESEDSVSDSESINKSEDISEEIDYKSVEAEFMPVFDNIFDLFKSPFEEI
>CR1-1_DVi_pol#LINE/CR1 1443-4298  [Drosophila virilis]
LASSSDQIFIHYQNVRGLTSKLKNLFIASTSFDSDIIAFSETWLNSTISDFEILPNNFILFRNDRPTRGGGVLIAVKATL
QSELFCFSTPTDAEIVSVKVSFPTRNIYVTCSYVPPSSDIQVYMNHITCIKEVSSHVRDNDLLLVLGDFNLPNISWSLFT
AENYLVPSAQHDFLDCMLDLSLFQINSISNHMNRTLDLVFVNDYLISNVSRSPPLSLPEDVYHPTLEIAMLNCNPSISCS
SANKPRYCFRKGNYSLLNQLIYSTDWSFLYDSVDMNTAINSFYITLNSLLDVCIPKSIPSTTFSKPPWFTPRLSHLKNVK
SKYFKKFKKSGSCTDLAKYSIAKSNFFLLNSQCYENYLIRCKRQFARNPRQFYNFVNLKRKSSSLPSSFFLGMDKASNDT
DSANLFANFFQSTYSSVCPNTNSYPYTISSASSIPPPIISHSSLLLAINSLKSSYSPGPDNIPSCLLKECSSSLFYPLLK
LFNLSLETSVFPSLWKESYIIPLHKKGGKSDIQNYRGIAKLSAIPKLFEKIITSNLQHFCKSVVSPVQHGFVKNRSTTTN
LLEFTSLVNDAFLSKMQTDVIYTDFSKAFDSVHHDILLFKLDRIGFPLSLLLWINSYLKGRTQRVILRLTTSKRVHVTSG
VPQGSHLGPLLFTLFINDLPSVISHARVLMYADDVKLFLSYTNPLHHSRLQDDLNAMQLWCSANQLHLNCSKCMFMTFNR
TTPYLVSYTIDNIPLQRILTVKDLGVIFDSKLCFNLHIDTIVNEAKGVLGFIKRWSKEFNDPFITKLLYISLVRPILEYC
SCIWSPQYINSQDRIESVQKQFLLFALRGLNWDPNLRLPSYSSRLLLLNLPSLINRRTILGVVLLHKLIIGDIDSPFLLG
RLQFSVPARPTRNYRPLLLSTCTTDYAMHNSFRVLCKNYNSLHHVFSTELSLPLIKSLLSGYLREVADHSQL
>CR1-1_DBp_pol#LINE/CR1 985-4365  [Drosophila bipectinata]
MVTVDAVFNSSNNWLRLLIDILQQQQLFSRRVVYFLSSLVDAQQQQDDGNRDVGSASLILSLFAGPLAGAFFSPMEDVYL
RFGPVGGSLLRLDVPDYERSMFSPGTESALLLDSRRSTDESNGNFYVSLSAILQAMRIGYASTCTSTRSALSPSPPCRPI
PSLDCSYSSSSDPNKSLKVLFQNISGMRTKTRMVFLNSSACDFDVIILVETWLNDKFSSSEFFEPNLYHVFRKDRDAFST
QCERGGGVIIAIRRSLQATPLRLPVADPLLDQLAVSIQGVHGPFVIIASYIPPNSAFSIYHAHMENITSVCARTSDPTAL
MVAGDFNLSSIVWSWDPESPCMLPSNVHQSHEIVVLDDIFSLGLSQVNNIFNDLSKILDLIFLNNLVNSKVELCNVPLSP
CDMHHKPLVINIEFYSFLPSASPIPYYHLNDTNLSLINASISAFDWVSLFSDGSIDDCYTKFLVALFNIIDTYAPVRVRR
SYRLPWYTKGLKNLKNRRDKHYKRFIMTGETRAGELYRQFKREFDFLNKFLYNQYISDVEASLRSNPKAFWRFVNSKKSK
SDIPSSICYGNLAADSDQGVSDLFAKYFASNLEPKVPWSDHETLLSIEPFLNVSNMDVLDGDLVEATGHLTESLTPDVDG
ISPFFLKRSIASLSTPLQLLFSFSLSSGRFPHRWKITSITPIHKGGSRCDVTNYRPIAKICNVAKILERIVTKKLTFLAR
NFISPNQHGFLPGRSTTTNLAVFSKHCFEAFENRFQVDAIYTDFSKAFDKVCHAALLAKLYKLGIHSCLLSWFESYLADR
PCHVTVGDAISSPFVTSSGLPQGSSLGPLLFIIFINDISSCFRHSHFLMYADDLKIYKEISCISDSYLLQEDISRVYSWC
SRNLLPLNLSKCMFTRYSRRSLEICTGYSINNYNLAAKEEVLDLGVLFDSKFKFSGHLDYILPKAYAMLGFVKRHVNQFK
SPYSSLSVYAAFIRSRLEYASIIWNPECKVRSNRIERLQKKFLKFALLPLRFQDPVPSYQSRCLLLNVCTLEDRRKLAAL
TFLNNLIVDNIDCPFLLGLVNFNVPQRDLRTFAPFRVKCHRANYLLNEPIERALSYFNSLPPSLRIEWGSDKGVLKRKLI
RHLLSFC
>ATMU10_tp#DNA/MuLE-MuDR 485-3153 Via genewise with ATMU11_tp, 3 introns [Arabidopsis]
VDEANRKKRKRKKVVEVDIEEDREPVSGDDCEVVGDEDCEEVCYADKRIGNNEEHEEDDDGGLGVEEEDCEDFEAEFGAQ
AREEEDESDGDSGDDIWDDEKIPEPVYHSDDEEVXTPEFDDPEKLLRLGKTFNNPEDFKIAILRYSLKTRYDIKLYRSQS
LRVGAKCTNTDVKCQWRCYCSYDKKKQKMQVKIFVDEHSCVRSGYSKMLKQGTIAWLYRDRLIKNPKITKKAMVDEIQRE
YKLTVTEDQCSKAKTIVMRERKATHQEHFSRIWDYQAEIFRTNPGTKFEIETIPGPTIGSLQRFYRLFICFKSQKDSWKQ
TCRPIIGIDGAFLKWDIKGHLLAATGRDGDNRIVPIAWAVVEIQNDDNWDWFVRQLSESLDLQDGRSVAIISDKQSGLGK
AIHTVIPQAEHRQYARHIMDNWKKNSHDMELQRLFWKVARSYTEGXFQAHMRALKSYNPSAYESLLKTNPLTWSRAFFRI
GSCCNDNLNNLSESFNRTIRNARRKPLLDMLEDIRRQCMVRNEKRFVIAYRLKSRFTKRAHMEIEKMIDGAAVCDRWMAR
HNRIEVRVGLDDSFSVDMNDRTCGCRKWQMTGIPCIHAASVIIGNRQKVEDFVSDWYTTYMWKQTYYDGIMPVQGKMLWP
IVNRVGVLPPPWRRGNPGRPKNHDRRKGIYESATASTSSNTELSRMYRVMTCLNCXGEGHNKAGCKNETVAPPPKRPRGR
PRKDQDSRTILFGHGQSWQGSQGEPSVASQPAQPSQPSQ
>CR1-2_Crp_gag#LINE/CR1 388-1446[Crocodylidae]
MVSTRSAARAPARGARPSRGLSEASTQTEPMGGLASPHPLACGSCPARPGGAGTGDPHTCPAGARLRALEARVRELQEEV
SRLRGIREAEEEIDSYFLSLQGRTPKEXAPQEVPSTAEWQTVTSRTRAARNTAVPVPPVRLENRYEALATLEEKEGEEET
GEEATPRSPRPXQAEGDKQARRRKRRVIVIGDSILRGTEGPICRQDPSAREVYCLPGAKIQDVKGMLQAVIQPTDYYPMV
LVHVGTNDAARRSPDRLMADYHALGCVLKEMGAQVVFSSILPVSGRGRRHATCIAETNWRLREWCLEAGFGFLDHDRHIT
TRDMLGWDGLHLSPKGKRVFSSRLADLLRRALN
>CR1-2_BF_pol#LINE/CR1 318-3836  [Branchiostoma floridae]
MSLTISRSVVFLLLVLNSIQASTVGYGPSKVRRTGTPCLLFTGGNAPPSWYPVLSLNNNEPTPWLKINFGTTGILLKHAK
ILRTSDRLCLLYLCSVLMSQAVDLETNPGPRPPKYPCGSCGKAVTFKHKGVCCDRCDCWFHHDCQGLSSYMYPYLGNSNV
SWICLNCGLPNLSTTFFDSFNIESDSNPFSPLSDSSPGMPLAASSPKSLTQNKARPTTRPIRLVNANFQSLRNKKLELET
LVEETKPDILVITETWLDDSCNISEYFPTHLNMSVFYRNRPDDNHGGVLIAVTNEFICSQEPQLETDCEMVWVKIQLAGS
KSLYVCAYYRPHVDDSNSLDNLEQSMNRICNKRNSHIWIVGDFNFPGWDWSDPQHPVLKPGCAYPGLHRQFLELLSDQNL
SQVVDRPTRNDNTLDLVLMSNDNCVNRINTLPPVGDHDIVFVEADIHPRKIKAKPRKILQYKRTNWEKFRDEMEDFQTEF
LDLAQGDASVDDLYNAFSSKLSQCVDKYVPSKMVGAKRHLPYVTPDLKRLMRKRDRYYRKTLGQTSHERKDKLNQYKKEI
KKKLKECYWQYIESIITDIPVPGDTSDNTNNPPAKQGTKKFWSFLKSIKSERSGVSHLRNNGTLVSDSKSKADLLNQQFQ
SVFTNEPSDDPLPDLGPSPHVSMEDIQIEVSGVDKLLGNLNIHKASGPDQVHAHVLKELSSVLSPILQVIFQRSLDTGIV
PEAWKEANIAPVYKKGDRSKPENYRPISLTSICCKIMEHIIASTMMTHFQANNILYDLQHGFSHGKSCETQLLSLTDDLA
VNRNNGIQTDLVFMDFAKAFDKVPHRRLLHKLQYYGVRGNTLVWIQNFLLGRSQTVVLDGERSDPMPVTSGVPQGTVLGP
ILFLAYINDLPEHAANAKVRLFADDCILQMPIHDSSDCNKLQEDIDNICLWEQRWLMEFNPSKCEVMTIPSSKTPITHTY
SLHNHPLNKVSTTKYLGVTISSNLTWGSHVDAITSKANKTLGMLRRCLRVASTAAKERAYKALVRPHLEFACSVWDPHTQ
DQVRKVEMVQRRAARYVTNNYQRDSCSVTALINQLGWQSLQSRRKNARLITMYKIIHNNISVPHASKLVLATRCSRRTNH
AFKLQAIASKSNFYRLSFFPRTIQEWNELEPGVAEAGSLSQFKTELGRALLH
>59799395_Bgr_pol#LINE/CR1 gi|59799395|gb|AAX07243.1|  reverse transcriptase  (scorpion) [Brotheas granulatus]
ISPVVLKNCAPELTPVFCRLFKISYNTAEFPSPWKLSHVQPIPKKGDPTIPSNYRPIALTSILSKVMEKVINSQLLTHLE
TAALLSDRQYGFRHGRSTGDLLAYVTHTWNECIEKFGESVAVALDISKAFDQVWHRGLLNKLPSFGLSAKLCKWISSFLS
NRSIRVVVDGATSDAHLLNAGVPQGSVFGI
>ATMU13#DNA/MuLE-MuDR 678-2941 Via genewise with ATMU11_tp, 1 intron. [Arabidopsis thaliana]
MFDDDVDMFYKYSDGDVEYNGGNESESEERIEEEIVRRKKNTKKNKKEKKKKDEEDPLERFDFEVDDGVANFEDEIPIGR
DIIPESSDEDEDPILVRDRRIRRAMGDKFVIGSTFFTGIEFKEAILEVTLKHGHNVVQDRWEKEKISFKCGMSGKCKWRV
YCSYDPDRQLFVVKTSCTWHSCSPNGKCQILKSPVIARLFLDKLRLNEKFMPMDIQEYIKERWKMVSTIPQCQRGRLLAL
KMLKKEYEEQFAHIRGYVEEIHSQNPGSVAFIDTYRNEKGEDVFNRFYVCFNILRTQWAGSCRPIIGLDGTFLKVVVKGV
LLTAVGHDPNNQIYPIAWAVVQSENAENWLWFVQQIKKDLNLEDGSRFVILSDRSKGLLSAVKQELPNAEHRMCVKHIVE
NLKKNHAKKDMLKTLVWKLAWSYNEKEYGKNLNNLRCYDEALYNDVLNEEPHTWSRCFYKLGSCCEDVDNNATESFNSTI
TKARAKSLIPMLETIRRQGMTRIVKRNKKSLRHEGRFTKYALKMLALEKTDADRSKVYRCTHGVFEVYIDGNGHRVDIPK
TQCSCGKWQISGIPCEHAYGAMIEAGLDAENYISEFFSTDLWRDSYETATMPLRGPKYWLNSSYGLVTAPPEPILPGRKK
EKSKKGKFARIKGKNESPKKKKRKKNEVEKLGKKGKIIHCKSCGEAGHNALGCKKFPKEKVPRKRKSKNDGNDEVCFCCI
VSFFTFSVS
>Ag-CR1-22_pol#LINE/CR1 933-3896 [Anopheles gambiae]
MFSVRDIKNISHAKPTDTALKPCDIHFHYQNVRGLRTKLTEFGLNTLDAKYQIIILTETWLDNSIPSSLLFDPGYSVYRC
DRSLSNSMHTRGGGALIACSSLLNTRELTLPRNSLEQVWVTVRLSSCTIFIGTVYIPPNRANDTDTLTSVIESVSAIVNH
AKTNDLIFLFGDFNFSAVSWSLAQQTFGHSSSFAHYVANSSSSVRSRFLDEINASDLYQISCIKNSLNRQLDLVFANFIA
ATYCIDLHPCPTPLVSPDLYHPAIDLTVRIPSTMPNPTLTQASRPRMNFYKTNFTRLDELITNFNSQFRISQFNSVDEAL
SIFIRFLLSSFDSCVPIITPKSGPAWSDRHLKKLKRAKEAALKKYTKYRSPVNKSILNETTRLYRSYNKIRYGGYLSRLE
KNFIKRPKALWSFRKKHNSTNVTPKSIYHNDRAGSTASDMCDIFACRFEEAYTISTTDDNIITNALINTPNDVIDLNLTN
ISQESVLNVLKAVKPKASPGPDGIPAIILSRCCESIAPIFTKIFNFSLQQGEFPSIWKSSWIVPIFKKGDKEDAANYRGI
TSLSAGAKVFEKVIQTSLLTASYHYISPQQHGFVPKRSTITNLVDFTSQCLRNMDSRIQTDAVYMDLKAAFDSIDHNILL
AKMNKLGLGRNLICWLESYLVNRSYAVSFSRCHSRSFIASSGVPQGSNLGPLLFVLFINDLSYVVPAANHLMYADDIKIY
MTIKNDTDHSELQQYLLDFHQWCNRNRLSLCIEKCRVISFTRAREIKNTSYTVNGLPIERTNTMKDLGVILDSKLSFDQQ
TEEVITRGNQLLGMLFRITRDFKDPVCIKALYCGIIRPVLEYACVVWKPSTQRLSERMESIQRRLSRYATRLLPWPPGSQ
LPPYESRLLLLGLQPLHIRRRTAQQLFVAGLLQNNIDCPSLLQQLNFYAPAVQLRSRPLLALNRSRTGYGSRDPLNSMIR
VFNEVRHLFDFGTSVQSFKNCLRSELLR
>CR1-1_AMi_pol#LINE/CR1 1320-4217[Crocodylidae]
LGSPGDGDQSPEVSGEAGDLEEEQAGGGNRGGALILPEKSGQSTSYLRCLYTNARSLGNKQEELEVLAQSRNYDVIGITE
TWWDSSHDWSTVMDGYKLFRKDRQGRRGGGVALYVKEPYDCSELQYETGDRPVESLWVRVRGESNKGDVMVGVCYRPPDQ
EEVVDEAFFKQLAEVSRSQALVLMGDFNHPDICWEGNTAVHRQSRKFLESVGDNFLVQVLERPTRGHALLDLLLTNREEL
VGNVVVDGNLGSSDHEMIEFRILRKGRMESSRVRTLDFRKADFDSLRELMGRIPWEASLRGRGVQESWLYFKEALLRVQE
QTIPMRRKTSKYGRRPAWLSRELFSKLNHKKEAYKKWKLGQTTREEYKSIARACRDEVRKAKAQLELQLARDVKGNKKGF
YKYVSSKRRIRESVGPLLNGGGNLVTEDAEKAEVLNAFFASVFTGKVSSQTTAPGSTVWGGGEQPTVVKEQVRDYLEKLD
VYKSMGPDGMHPRVLRELADVIAEPLAIIFENSWRSGEVPDDWKRANIVPIFKKGKKEDPGNYRPVSLTSVPGKIMEQIL
KESISKHLEEKKVIRNSQHGFTKGKSCLTNLIAFYDEMTGSVDAGRPVDVVYLDFSKAFDTVSHNILAGKLRKYGLDEWT
VRWIENWLEHRAQRVVINGSMSSWQLVSSGVPQGSVLGPVLFNVFINDLEDGIECTLSKFADDTKLGGVVDMLEGRARIQ
SDLDKLEDWAKRNLMRFNKDKCKVLHLGRNNPMHQYRLGADWLGSSSAEKDLGVTVDNKLNMSQQCALVAKKANGILGCI
GRCVASRSREVIIPLYSALVRPHLEYCVQFWAPHYRKDVDKLERVQRRATKMVRGLGHMTYEERLRELGLFSLEKRRLRG
DLIAAFNYLKGGSKEDGARLFSVVADDRTRSNGLKLQQGKFRLDIRKNFLTRRVVKHWNRLPREVVESPSLEVFKTRLDK
ALAGMI
>BfCR1_pol#LINE/CR1 gi|17529698|gb|AAL40415.1|AF369891_4 endonuclease/reverse transcriptase [Branchiostoma floridae]
MGEAWKRGIECETCGGWFHASCQNIGTQTYSDLGASDVRWYCELCNAPNYSTVSYDLYDVESEIFDHDAASGGNFTFCSD
DSFHPTHSSTPTRQSQQNKNLNRPIRILNVNFQSVRGKVPELDNLIQSLRPDIILGTETWLETPEISSSEIFPTGYTKVY
RKDRNKYGGGVLVAVSDLLEATMETSLDRDCEIVWAKVKLRGKRDLLIGSYYRPHEGLQESLKEMAESVRLACQSRNAIV
VLGGDFNLPDWDWKEKVLKPGSSYPNIHRQFIDIISDLGMEQIVEKPTRGENTLDIIVTNHPSLFPRIEIVPGLSDHDIP
YAELQISNARVRQKERQVMCFNKADWDSLRKATKELTDSILSTHADKPDVEAVWSDLKTGLQERVQEFVPSKKIRARKSP
PWINHKTLQLIRRRDKIHKKYKKTGRQDLFQEFKSLKRKVQRQLRQQYWSHVQGLITEDCHDQPKPTKKFWTFIKSKRNE
ITGISPLKKEGKLVTDDKERAEILNHQFQSAFSSREDLTIEEFKLRTQMPPPNPNQPLLEDITITTFGVEKLLQNLDPTK
ASGPDQISPRVLKEVATELAPSLAFLYQASLDNGIVPDDWKCAHVCPVFKKGERYKAENYRPISLTSIPCKLLEHILVSE
IMKYCEKHDILCTQQHGFRKGRSCETQLLGLVDEVSTTLENGHQEDLLVLDFSKAFDKVCHSLLVYKLQHYGIDGKVNAW
IRDFLSNRKQAVIVNGTRSEYVSVESGVPQGSVLGPSLFLLFINDLPAGLSSTARLFADDTACQKVIKVARDQDLVQEDL
HKLALWEQKWIMSFHPEKCITVHMSRSRKQMEREYELHGHKLKACDQVKYLGITLTRDLKWSPHVTNITNKANRSFGFIR
RNIKVNSIAIREVAYKALVRPTLEYSSSVWDLYTDKDIMTIEKVQRRAARWVCQRFRQTSSVGEMLESLQWETLQQRRKR
ARLITFFKIHHGIVTVNTSSPPTVKRQTRLTRNVHPLTYVIPRCRTTYRQMSFFPRTILEWNSLPAETVTVPSIAAFREK
MAHLN
>Tc1_Ele13#DNA/TcMar-Tc1 393-1480,1 intron (964:1028) [Aedes aegypti]
MPKKAQISISIRNLIIEHHKTGKSYRDIAGIVQLHKDTVARIVQMYKKRGSILPAKRSGRPSKTTGRIDRAIVKKAELDR
GLSAPKIAKQIESEFSIQLTSQSVRNRLHKKGLKGRVALKKPWLSAKNIKKRLNWAKDHISWTSDDWNKVIWSDETKVML
FGSDGITRKWRRTGESLKKECLRPTVKHGGGRVMVWGSMATSGVGELEFIDGIMTKEVYLDILKRKLPASAQKLKLRHRY
TFQQDGDPKHTSKLVSQWFKEKRIKVMEWPAQSPDLNPIEHLWSILKIKVQEQKPTSIQQLRQVISSEWDKITPETTAKL
VESMPRRCRAVIEAKGGHTKY
>Tc1-12_Xt_tp#DNA/TcMar-Tc1 390-1409 [Xenopus (silurana) tropicalis]
MKTKELSKEVRDKVVEKYKSGLGYKKISKSLRIPRSTIKSIIFKWKEHGTTTNLPREGRPPKLTDRARRALIREAAQRPK
VTLKELQSSTAETGVSVHRTTISRTLHRAGLYGRVARKKPLLNVKNKKARFEFAKRHVGDSPNVWRKVLWSDETKIELFG
HQGRCYVWRKPNTSHHPKNTIATVKHGGGSIMLWGCFSAAGTGKLVRVEGKMDGAKYRDILEQNLCQSACDLRLGRRFTF
QQDNDPKHTAKATLEWFKGKHLNVLEWPSQSPDLNPIENLWSDLKIAVHKRKPSNMKELEQFCLEEWAKIPVARCGKLIE
TYPKRLAAVIAAKGGSTKY
>Tc1_RT_tp#DNA/TcMar-Tc1 427-1449 wised with Tc1_FR4 [Rana temporaria]
MKTKELSKQVRDNVVEKYKSGLGYKKKLSKSLNIPRSTIKSIITKWKEYGTTANLPREGRTPKLTDxARRALIREATKRP
KVTLEELQSSTAExGVSVHRTTISRTLHRxGLYGRVARxKXIAXAKNKKTRLEFAKRHVGDSPNIWKKVLWSDETKIELF
GHQGKRYVWRKPNTSHHPKNTIPTVKHGGGSIMLWGCFSSAGTGKLVRxEGKMDGAKYREILEENLFHSVRDLRLGRRFT
FQQDNDPKHTAKATLEWFKGKHVNVLEWPSQSPDLNPIENLWXDLKIAVHKRXPSNLKELEQFCxEEWAKIPVxRCAKLI
ETYPKRLGAVIAAKGGSTKY
>Tc3_tp#DNA/TcMar-Tc1 this is: gi|17509703|ref|NP_493405.1| transposable element tc3 transposase family member (1O334) [Caenorhabditis elegans]
MPRGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIREYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA
RDIRNEFQLSASKRTILNVIKRSGVIVRQKLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDGCRYYW
RDLRKEPMVFSRRNFGGGTVMVWGAFTEKKKLEIQFVSSKMNSTDYQNVLELELSKYLRHYSRKDFRFQQDNATIHVSNS
TRDYFKLKKINLLDWPARSPDLNPIENLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSMEDRLFEII
RTQGNPINY
>Tc1_tp#DNA/TcMar-Tc1 has intron gi|17566302|ref|NP_507496.1| transposable element tcb1 transposase (5S287) [Caenorhabditis elegans]
MVKSVGCKNLSLDVKKAIVAGFEQGIPTKMLALQIQRSPSTIWKVIKKYQTEKSVALRISPGRPRVTTHRMDRNILRSAR
EDPHRTATDIQMIISSPNEPVPSKRTVRRRLQQAGLHGRKPVKKPFISKKNRMARVAWAKAHLRWGRQEWAKHIWSDESK
FNLFGSDGNSWVRRPDGSRYSPKYQCPTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILETTMRPWALQNVGR
GFVFQQDNDPKHTSLHVRSWFQRRRVHLLDWPSQSPDLNPIEHLWEELERRLGGIRASNADAKFNQLENAWKAIPMSVIH
KLIDSMPRRCQAVIDANGYATKY
>Tc1-2_FR_tp#DNA/TcMar-Tc1 322-1158 [Takifugu rubripes]
MAKTKELSKDTRNKIVDLHQAGKTESAIGKQLGVKKSTVGAIIRKWKTYKTTDNLPRSGAPRKISPRGVKMITRTVSKNP
RTTRGDLVNDLQRAGTKVTKATISNTLRRQGLKSCSARRVPLLKPVHVQARLKFAREHSDDPEEDWENVIWSDETKIELF
GKNSTCRVWRRKNAELHPKNTIPTVKHGGGNIMLWGCFSAKGPGQLIRVKERMNGAMYREILSENLLPSARAFQNITALE
EICMEEWAKIPATVCESLVKTYRKRLTSVIANKGYITKY
>Tc1-2_DM_tp#DNA/TcMar-Tc1 317-1378 [Drosophila fruit fly genus]
LLPTFISFINLLNMGKTKELSEFIKNEIIIKYNSGISVQNIIDLYKIPRATVYYQINKYKKTHTTKNVARSGRPRKTTQK
DDGYILRKFKQNVLQTPRSVAKELKEGAEIDISERTVRRRLKEADFGTYVSRVIPLITPRNKLKRLDFAKKYVGQPASFW
NNVLWSDESSFEFHCSKKIFFVRLPKQYRKKVAPVCQRINHSGGSVMFWGCVAFTGLGDLVPVDGTMNQRKYLDVLNNHA
FPSGDKLIGESFILQQDNAPCHKAKLITQFLKDVCVNTLDWPPQSPDLNIIENLWSYLKRKRSANLSRSREETILEIQTL
WKDISIDYIHSLVQSVPKRLQKVIDAKGGYIFY
>Tc1-3Ory_tp#DNA/TcMar-Tc1 200-1199 [Oryzias latipes]
MKTEDHSKQLRERVFKRYKSGDGCKKMSKALSIPPSSVKSIIKKWKEYGTCGNLPRSGNPHKLSDCASRRLVREATKNPP
TTLQELQVSAAETGETVHVATAARVLHRSKHYGTVAMRKTLLKKIQIRARLEFAKSHVEDSMIEWKKILXFDETKIELFG
HQTRQYVXTATNTAHHQKYTMKHGGGSIMLWXCFSATGPGRLVKTEGRMHAAKYTDILEDNLLGSARELQLGRRFILKQD
NDPKQTAKATQEWFKKYQVNVLEXLSQSPDLNPIENLWLDLKRAVHGRYPRNLTELEQFCKDKWRKIPVCRCXKTETYPX
RLGAVIAAKGASTN
>Tc1-8_Xt_tp#DNA/TcMar-Tc1 400-1422 [Xenopus (silurana) tropicalis]
MGSSKQLSKDLKTKIVQYHGLGEGYKKLSQRFKLSVSTVRNVIRKWKATGTVAVKPRSGRPRKIQERHMRRIVRMVTDNP
KITSKDLQEHLAADGVSVHRSTIQRNLHKEHLYGRVMRKKPFLHSRHKQSRLLYAKAHLDKPQSFWNKVLWTDETKIELF
GHNKKRFAWRKKNTAFQEKHLLPTVKFGGGSIMLWGCVASSGTGALVKVEGRMNSTQYQQILQDNVQASVTKLKLRRGWI
FQQDNDPKHSWKSTKAFMQREKYNILEWPSQSPDLNIIENLWDDLKQAVHARQPSNLTELERFCMDEWSKIPPSRIQTLI
KGYRRRLEAVTFAKGGSTKY
>Tc1-4_Xt_tp#DNA/TcMar-Tc1 358-1380 [Xenopus (silurana) tropicalis]
MGKTKELSKDTRDKIVDLHKAGKGYGAIAKQLGENRSTVGAIVRKWKRLKTTVSLPRTGAPCKISPRGVSLMIRKVRNQP
RTTREELVNDMKRAGTTVSKVTVGRTLRRHGFKSCIARKVPLLKSSHVQARLKFANDHLDDPEEAWEKVMWSDETKVELF
GLNFTRRVWRKNKDELHPKNTIPTVKHGGGNIMLWGCFSAKGTGRLHCIKERMNGAMYCEILSNNLLPSVRALKMGRGWV
FQHDNDPKHTARITKEWLRKRHIKVLEWPSQSPDLNPIENLWRELKLRVAQRQPRNLTDLEEICVEEWAKIPVAVCANLV
KNYRKRLTSVIANKGFCTKY
>IS1081_Mtu#DNA/MuLE-MuDR IS1081 gi|15842686|ref|NP_337723.1| IS1081, transposase [Mycobacterium tuberculosis CDC1551]
MGGHRVILRNDQQKSIEGNDAMTSSHLIDAEQLLADQLAQASPDLLRGLLSTFIAALMGAEADALCGAGYRERSDERSNQ
RNGYRHRDFDTRAATIDVAIPKLRQGSYFPDWLLQRRKRAERALTSVVATCYLLGVSTRRMERLVETLGVTKLSKSQVSI
MAKELDEAVEAFRTRPLDAGPYTFLAADALVLKVREAGRVVGVHTLIATGVNAEGYREILGIQVTSAEDGAGWLAFFRDL
VARGLSGVALVTSDAHAGLVAAIGATLPAAAWQRCRTHYAANLMAATPKPSWPWVRTLLHSIYDQPDAESVVAQYDRVLD
ALTDKLPAVAEHLDTARTDLLAFTAFPKKIWRQIWSNNPQERLNREVRRRTDVVGIFPDRASIIRLVGAVLAEQHDEWIE
GRRYLGLEVLTRARAALTSTEEPAKQQTTNTPALTT
>Mariner-8_SM#DNA/TcMar-Tc2 41-547 (fragment; consensus incomplete or for non-autonomous element) [Schmidtea mediterranea]
YDYSLFDVSPGKCIVWDSCRAHISANVKEHCRRRNIKMVVIPGGLTPYLQAGDIGIFKELKDKISGFINTWKTSEEIVYT
RGGNPKAPNKNLVNQWVNSAWGCVSIQNIKNSIRSAGFAENFNDWHISKHDIYGDRFKBAYEASIRPNLVPVQDDFEFET
DVFDVIDE
>Mariner-6_XT#DNA/TcMar-Tc2 991-2266 via tfasty with SMAR22, 1 frameshift and 1 stopcodon. [Xenopus (Silurana) tropicalis]
MSNSQNPIMAAPARKKYEASFKLKVVNFAMEHNNCAPARQYGVTEKMVREWKANEKALKSMPRGKCALRRGTPHWPELKK
QVADMMNEHRQNGYIVTRNQIRLFALQWAKSNPDHSNRFKATVSWCTRFMGRHNMALREKTKIAQKLPADLDSKVNNFHR
YIIRQRTKRGYALSSIVNMDETPMNFNMVGNKTVHQKGEKTILIKTTGHEKSSFTVVLGCTADGAKLRPMIIFKRKTMPK
LKFPVGCFVHVNEKGWMDEEGIKLKVDNVWSRRPGGLIQKRSLLVWDMFRAHLTPSTKERLARLKTDAAVIPAGLTSLVQ
PLDVCLNKPFKDHIREQWNEWMVSCEKSFTKGGNMRAPQLDVLCKFVIKAWNDIDAETVIKSFKKCGISNxLDGMEDDYL
WQDEEEGEAKTTPSDTEFDPYNDCL
>CUMULE_tp#DNA/MuLE-MuDR 1165-3588 [Cucumis melo]
MAHVRILVRHGGEWDEGRRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYEIKGEKEAPPFELSNDR
DLKFYILSENPLEVPLYLSFEPTSNRSMKVLNKDYNSVSGSNQVQNLNPHPPPIGMDRLDENEVDIGEVEGGLCHNMIGT
NSAIWESYESYHSIDDTFTLESVEMYNELFDIPEQRDAPTKDCKGKGKVDYRSSSRKLKTKGSGWSEESSTSEELDVGQI
FFCKRDLSMRLSVLAMKKNFQFVVKKSTKEVLFVRCIDNKCGWRLRAVRLKDSNIFKIKKYVKVHSCSLEFLNRDHRQAK
SWVVGELIKSKFKGPGRIYKPRDIIEDMRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKFTNSGTIFH
MELEDDRFFKYLFMAVGACVRGFLNCIRPVIVMDGTFLKNKYRGQLIVAVCLDGNNQIYPLAFGVVDRETDDSIQWFLEK
LKGAIGEVPNLGFVTDRKTCFAKGISSVFPSAFHGLCVQHLSQNLHDKYKNDTVATLFYNASRTYRESTFVEAWRHLLSF
PNGSGKYLNDVGIARWSRVHCPGRRYNMMTTNIAESMNSILKEPRDLPIASFLENVRALLQPLVLGASRRSIKVTSTLTK
WAELVIQKKQEGALTMKVNPIDCYQFHVKDLDKEEVVNLQTKECTCKEFQAEQLPCSHAIAAARVRNINVYSLCANYYTN
ECLLAAYAEAVYPVGNQSDWKTSEDYVHMTVLPPKVVKRVGRPKKKRIPSVGEAPKLHKCGRCKQIGHNRLTCTNPISYT
DKSSIQD
>SMAR22#DNA/TcMar-Tc2 255-1577  [Schmidtea mediterranea]
MEPPTKRRKYEASFKLKVVDVAKGSNNCAAARQFDVTEKMVREWRKKEDDIRQMPKNKCAMRRGITRWSKLEDDVAEWVL
QQRQDGYIVTRNKIRSHALKWAKANKEESKDFKATVGWCSRFMNRRNLVIREKTKIAQKLPKDLEHKITNFHHFIIQLRK
RHKFPLSHIGNMDETPMNFDMLGNKTVDFKGVRTVNVKSTGHEKTRFTVVLGCMADGTKLKPMVIFKRKTKPKITFPPGV
LVHFHEKGWMDENGVKLWIENIWNRRPGGMRKERSLLVWDMFRSHITANSKTRLARNNTDIAVIPGGLTSVLQPLDVSLN
KPFKDNARAQWNEWMMNGEKSFTKNGAMRGASLDVLCEFVIKAWDNVKVESVIKSFKKCGISNAMDGSEDDLLYESEDEA
EVDLPEPEWNPYDDGICDESRDVFEKLFETDGDDGDEFDGF
>SMAR6#DNA/TcMar-Tc2 288-1580  [Schmidtea mediterranea]
MSTKRKSYSVEYKKGIVEDSRGVNLVAFCKEKMLDLRMVRKWRADYDYLCQMVDQGNEKKRKVGSGRQLLFSELEECIWE
WIADRRAMALVVRRADIQKFALETAIEFGIFTEEFKASKHWLDNFLQRHELSLRRSTTLFKLEDNEVVKRALAFKRFVDG
IDFSKYELSNMIAMDETAVFLGQGAQTTVDHKGSSSIYVSSSGYDSVRVTCILAIRLDGKKVSPFLITKGKKDQIQRISG
IYVIESEKAWCTQAVIRKWVDFILPPLLRGRNRGLLVWDSASTHRAKDMKNFLAERRIDQIMIPAGMTGYLQTLDIAINK
PFKDHLRMEINDYFENRMVRNHRGNFVKPGLQEVVNWIKNSWDKITDSCVSNALRTGYLDKKYIFNDSYIARHERFGPMI
QQEMDLEENQNRNQNLIYDDVPEEDDMIVNE
>Tx_mos_tp#DNA/TcMar-Tc1 160-1170 [Toxorhynchites amboinensis]
MEAERREKIVHSYLENPLWSASRLAKQLKLPRNTVWRVIKRYKETLTTIRKPQANRRSGTVDRKLRGKILKTIKRNPNLS
DRDLARKFGAAHSTVRRTRLREGIKSYRASKQPNRTIKQNSVAKIRARKLYDQVLTKFDGCLLMDDETYVKADFGQIPGQ
KFYLATARGDVPAKFKFVFADKFARKFMIWQGICSCGKKTKVFVTNKTMTSELYQKECLQKRILPFIRSHDHPVMFWPDL
ASCHYSKVVQEWYAEKGVQFVPKNLNPPNCPQFRPIEKYWAIMKRRLKAKGKVVKDINQMKTWWNKIAKTMDEEGVRRLM
SRVTGKIREFLRNRDE
>TCB1_tp#DNA/TcMar-Tc1 277-1351 wised with genewise (one intron) and TCB2 [Caenorhabditis briggsae]
MVRPFGKKSFSVDERKSIVRGHELGAHPKILATQFSCSSSQIYRILKKNRDDNGVVHRQSPGRPRTTSRNMDRNILRACR
EDPRRTSTDIQLSVTSPNEPVPSRRTIRRRLQVAGLHGRRPVKKPLVSLKNRKARVEWAKQHLSWGPREWANHIWSDESK
FNMFGTDGIQWIRRPIGSRYAPQYQCPTVKHGGGSVMVWGCFSDTSMGPLKRIVGTMDRYVYEDILENTMRPWARANLGR
SWVFQQDNDPKHTSGHVANWFRRHRVNLLEWPSQSPDLNPIEHMWEELERRLKGVRASNANQKFAQLEAAWKSIPMTVVQ
TLLESMPRRCKAVIDAKGYPTKY
>TZF28_tp#DNA/TcMar-Tc1 410-1320 wised with Tc1_FR4 [Danio]
TKELSADLRYRIVXRHKAGEGYXKISAALKVPMSTATSIIXWKMFGTTRTLTRAGQPSKLSDQERRALVREVINNSMVTL
SXLQPSSMERGEPYRRTTICAAIHQSGLYGRLASXTTPRLEFAKRHLKDSHTIRNKILWSDETKIELFRVNARRYFWRXS
GTAHHQANTITTVKHGGGXIKLWGCFFSSXNGRLVRIEGXMNEAMYRDILKXNLLQSNLDFRLGXGXIFQQDNDRKHTAK
ISVEWLHNNSMNTLSEPXQSPDLNPFEYLXKRCKMAVHRRFPSNLIEFERYCKEEWAQILNDR
>Mariner-5_XT#DNA/TcMar-Tc2 304-1590 [Xenopus (Silurana) tropicalis]
MAPKKRHAYEAQFKLQAASYAVVNGNRAAAKEFNINESMVRKWRKQENELRQVKKTKQSFRGNKARWPQLEDQLEQWVIE
QRTAGRSVSTVTIRLKATTIAQDLEIEHFQGGPSWCFRFMKRRHLSIRARTTVAQQLPADYKEKMAIFRTYCSNKITDKK
IQPNHITNMDEVPLTFDIPVNHTVEIKGTSTVSIRTTGHEKSAFTVVLSCHGNGQKLPPMVIFKRKTLPKEKFPAGVIVK
ANQKGWMDEEKMREWLREVYVKRPDGFFHTSPSLLICDSMRAHLTATVKKQVKQMNSELAIIPGGLTKELQPLDVGVNRA
FKVKLRTAWERWMTDGEHTFTKTGKQRRASYATICEWIVDAWAKVSAITVVRAFAKTGIIAEQPPGNDTGNETDSDNDER
EPGMFDGEIAQLFNSDTEDEDFDGFVGED
>Kanga_Mdo_tp#DNA/TcMar-Tc2 156-917 [Didelphidae]
MGNADQTPVCFDIPSNVTVNTKGAKSVLIKTTGNEKTRMTVMLAVTADGRKLTPYVILRRKTLPKEKLPSGVIFRVQEKG
WMNEELVLDWLNVVWGRRPGALLRQRGMLVLDAFKGHLTENVKKRIAEMRTDLVVIPGGMTSQLQVLDVVINKPFKDHLR
KEYNEWMLARNHEFTPSGKIKKPSVTVLGNWIKTAWDKISTESIVLGFXKCCISNSMDGSEDGVLWEEEGDGDDSNDVST
SGDEEIEEEGEHD
>Mariner-6_ADi_tp#DNA/TcMar-ISRm11 329-1317 via tfasty with ISRm10_tp, 1 frameshift. [Acropora digitifera]
RALSLCHRERVLDLYHDGNSERGIAREVRVSRSYVNNIIKRYNEANTSLRAPKVCRGPQKVDLYASEYIEVQRLVKPSIY
ASEIRQRLHLDGVLHPTDLRSTSQINKLSRNEHAMTRKKISVIPRESTTTEVTDRIDDYLNEISTFHPTQLHFFDETGVM
KTSGNRIYGSAPVGVPAFEVQRYASMRTTTLNLMDSITGVDFFNILDGPSNGMELLNFFDEALKLEREDGSAVLERGDCV
IMDNCGFHHAGFVEPVLRGMLGDFGLGLIYQPPYSPDFNTCELCFHQIKGFLQPHQLLAEHETKIAIADGVLEITPRQSW
SFFHHVGYVS
>P-15_HM#DNA/P 403-2685  [Hydra magnipapillata]
MYYSTNNGGKRLLQSAIPTIFNIPNPPPLLGCKRKPPVERHSVPAKKQVVCLPVNSDSNLENKMSTNKINFNKLQRLLLT
LRVKVSRLRKQVRHLKSKQKTQKNCDGSIKHILNLSRKYLSPIQVSFFKSQLEMSKRVNKGKRWAVCDKVLALRILFHSP
QTFNVLRTIFCLPSQTCLLLFLSRVFSDLQEGFSTRLFSLLKLRADAMNPLDRNVSLVMDEMSLKQHLEYDRNSDRVYGM
KNGKLLNQALVIMVRGLANKWKQPIAYFYNNSTIATADLASLLRETISKVQETGLHIRCVVCDQGSTNIAALRLLGFSNN
LPYFPNPSNNKNIHVIFDPPHLVKSIRNNLRRHNIDINGEIVSWQHIQSLYNLDKINSVRLAPKLTDRHLDPGPLLSMKV
KLATQVFSYQVASALYCCSNTNSLPLSVLPTARFVERMDTLFDILNSYKLYADKPARCALTLKGASISQLEELKHWIEKW
KFCNVRSQASISCHWGLSVTINSVLTLSRELFSEGFQFVCTSRFNQDCIENFFSIIRSKGGWNDRPNVRQFRAAYRNALL
LLSVEKSKSNSNCIKDSNFETAFNLNDFMKCCNQATTNCGIYETENNIPKGISYFHPGSFYMFTGKILMQPKDQALLHMA
GWLIQKVKLCHRCADVLFLSSADNPSAFMSLVCEMETTFTKFIDKYLERDGLAMILINKIKKKCHFQFLHNQHEEHALYL
EKNIVLFFVITRIFYFIKFLNRDINPRNKSNAKKIARILHN
>P-4_HM#DNA/P 112-2691  [Hydra magnipapillata]
MVNKCCVVNCRSNYHNYGEVSTVVFSFPKNEELKKYWIKFVNRKDWTPTNSSVICIKHFEKKYYKKGNKNQRFRLIKNLK
PIPTIFDCTNLTEEGSLQLIKSSNSLRKSPTKRIFQPDQYEQFLLNDLINSFNDITESFAPDGFSFLKYDDHVIFYKLSH
STLSIPEVTECIRVNNEMHVKLFYRGSPLPLPQWFCQGRDCRLSCKSMLHNFPTYIKSQAEQFSSVLTELQQIKYMKKPI
YSANIIRYSLILRYTSMQSYQLLREELPLPSLSLLKKITSGNIDALSCAKRLKLEGKISQDICLIFDEMYLQKCEEYFAG
EMIGSDESGEMYKGIVCFMIVGLKQNIPYVIKTSPEKTINAEWLKEEIFECLRILTECEFNVRVIVCDNHSANVSCFKKI
LCASNQQAEDLFFIYNLKKIYLCFDVVHLIKNIRNNLLNCKRFLFPDFNFNGFKDPIIVCGGEIKWSTFHNIYEKDLTLD
AGLRKAPKITMKVLHPGNFKQNVSLALAIFDETTSAAIHSYFPDLKSSADFLTLFNKWWVLSNSKCQYSACNILGNAVVS
GDKKPEFLREMAHWIEVWQSQKIPNCEKFTLSVQTAAALIRTLNSHASLIEDLLNDGYHFVLTARFQSDPLERRFGQYRQ
MSGGRFLVGLKDVTISEKILKIKSIVKESINFDDSLKVPESENNLTDWKNFLLDIDEAQCTPEIMTLAPESREVGAHIAG
YIAKKLKKRFGTCCKEFLCCVNIDESNPDHTYLTIISRGGLTIPSPSLLDYVCTSFAMIDYFYKKIKKFSLHARQALEYL
LNHFYDSFQTFSCPMHEKTGIKLAGRIVVNIFLNNKRIISTSEVAVDHVKSFKKRKFEKI
>Candystripe1_SB_tp#DNA/PIF-Harbinger 2380-1025, 1 intron.  [Sorghum bicolor] Not to say that the entire Candystripe is a Harbinger. This coding region is for a Harbinger-like transposase though.
MLGDIGNTRGSQESRRAKLLKLLMLDEDDEEVTVLMTGTYMYASHLEKYMYASHLEKYCSRGPYRVPPITGLEWVQRKLA
NANSCYNMFRMTPDMFFRLHSLLTDRYGLKSNPKTTSIEALGMFLWMVGAPQSVRQAEDRFERSLATVHNLFHRVLKCVL
KLGDDIIAPRDLLFRTMHDRLQNRRFFPFFNGCIGAIDGTHVPMVVPSDKFIQHLCRKGKTTQNVLAACDFDGSVHDMRV
FDDALTTYKDVFPHPPAGKYYLVDSGYPNRPGYLAPYRGSEYHLQDFQNGAEPRGRKEVFNYAHSSLRNVIERAFGVMKM
KWRMLLSVPSYPPETQTHIIVACCALHNFMRLSGAFDSDFDHLDRHPNFVHPEAYMDQPECVPAPTSAECEQMNAFRDSI
ANGLFNRS
>HARB7_ZM_tp#DNA/PIF-Harbinger 374-1911 via tfasty with ATIS112A_tp, 1 frameshift. (includes translated intronlet) [Zea mays]
MFTNCHASTVSHDTSSTSHRLASAARQEYGFSPKRIPSINTHYFNTSLTLRIHSSTTMNPFVDSNIFLSMAQDMEDEDHE
LEVATYQHRRRRALNERRYAGSIPGRVRIHRDHISGDARIRADYFCAQPVYTDAQFRRRVCFLLRTSIHVHSTYFTLVLK
NKFVQYRFRMRRHVFERLVLAVQQVDPYFVQRPNCAGELGLSALQKVVAAVRILAYGVPADAVDEYVRIGESTAHEALKH
FCTAIQTAFGGYYLRKPTPADIARLLQVGEARGFPGMLGSVDCMHWEWRNCPTAWKGMFTGRGKHPTMILEAVASYDLWI
WHAYFGMPGSCNDINVLQRSNLFDSHLTGDSPPVTFSVNGHTYNMGYYLADGIYPDWPAFVKTIRHPYDVRTQHFATIQE
SARKDIERTFGVLQKRWAIVRGPAYGWSPQHIGDIMKTCIILHNMIVEDEGPSSLNTSFDNIGVLADTSHGSMSERNEYI
NNRYDQLHDPVKYNQLQVDLIHHHWARLGSGAT
>HARB4_ZM_tp#DNA/PIF-Harbinger 647-1954 [Zea mays]
MWTVCKGFARFMSTSSDRHRRHVRRMYDDEHILHMLHSSMVEDEDEEIHVHRGSVVGRSVINRDRESGYVRLMQDYFSDN
PVYNDDIFRRRFWMTKAMFHNICQALEAANPYFRQSCNAANVPGFHTIQKVTAAIRMLAYGGPADSLDEYLRMGESTILE
TVGHFTRTIVQLFANEFLRKPNKHDIAGLLQVAQQRGFPGMLGSIDCMHWEWERCPTAWQGSYRGHFKKPTLILEAITSH
DLWIWHAFFGLPGSCNDINVLHRSPVFDSIATGDVPPVTYEVNGTQYDMPYYLCDGIYPPWATLISGVPSAVSNKQRLFT
MKQAEYRKDVERCFGVLQGQYAIIKGPARLWHPVDLKFIVDCVVILHNMSVQVERHLPSLDGVDYDAATRLHIPNTRDVP
EIAQLIEKHKEIRCKSANEKLKNDLIEHVWNKHGNM
>31196825_Aga#DNA/P gi|31196825|ref|XP_307360.1| ENSANGP00000013602  [Anopheles gambiae]
EELSAALTLRYFSKKAYNYLAKDLKYPLPSIATLKRYAKRLNIKEGILDDVLKVVGNITKTFTRRDRECVLSFDEMKVSK
ILVYDPVSDEVIGPYNYLQVVMARGLFKNWKQPVFIGFDQKMTKDIIMTIIAKLAEHNINVTAIVSDNCQANIGCWKELG
AYDHKQPYFTHPTNEGKIFVCPDAPHLLKLTRNDSLIMVLYGFNYKGKIINVDLLFEMLSKRNEAEMTPLFKLADSHLIM
TPQQRQNVRSAAELLSRTTSVALRRYYPENENARRLADLIEKIDLWFSVSNTYTPTAKLDYKKSYTGRYDQLNALMDMFE
FTSNMVPCGKNKIQVFQKSILMQINSLQMLFDEMKSKYGQKVKFISTHKLNQDVLEIFFSQLRQKGGVYDHPSPLSCIYR
IRFMILGKSPTILRNQTDV
>21284380_Dbo#DNA/P gi|21284380|gb|AAM45386.1| P-repressor-like protein RL1 [Drosophila bocqueti]
MTYCLYCRKHVPGVKFIKAPKCFVRRSLWEKILGCSLGEYSKLCETHFDASQWKPTERKGHVVKRRRLNNDAVPQKESGP
EPKLAKLNYAHCSTQTEEKVINRTTLMGNEIMRKKISSMEKEMHSLRQQLEQYQTLEKSLGNIFTETQIKILKSGGKRST
FNATDMSAAICLHSVGPRTYKHLYEKGFPLPSRATIFRWLADVKINAGTLDVVLDLMENEEMCLADKLCVLSIDKIQLAA
AFDINGSEDALNERNNYVQLATVRGLKKAWKQPVYFGFNTLMDVDSLNTIIMKLHKINYPVVAVVSDLSPENQSLWRELG
ISETNKSWFSHPADEQLKIFVFSDTTQLIKLIHNHYIDVGLDINGHKLTKTTVQQTMRHCARPDVSIKLRINENHLKVCS
LTKQKDTLATQLFSRTTARSIRRCHELGYAINNACETADFFELFNDWFDVFNSNRLNFPDSSEAYGKQIENQQCTLARMS
EIMRTEMTESGDKLTFQMGILINNASLDGLYEYLSEKYDMIHILTSRLSQENVESFFGSMRSIGHGGQYDHPTPLQFRDK
IRKYIEGMIKLDQ
>MuDR-3_VV#DNA/MuLE-MuDR 937-3405 [Vitis vinifera]
MLLYKGNWVQDGNTYHFKGSEGKGITVKKNISYHELMRVVYRILQLDPIECSISMKYAFNGNIPTSPIQLRDDGDVKFFI
RLNCTNKLPAPLCITVDRRSKNNAESMFMHGNGHVNDGSIESLNVVGDESITKFNYEPLERSNVVEWNMNGYAIDDDYHV
LDTNLTSNVQVIENRDSSNKATQIMEIHSIMNIKDGLMNDAPTMIEEVSNNDQDMSRIGTSDCGTNDDHIEEKQIYSSKK
ELQKKLYIIALKEKFEFRTIKSTTKLLVLQCVDNECKWRFRATKLGSSNFFQVMKYHPTHTCRLDMMSRDNRHASSWLVG
ESMRQTYQVGRQYRPKDIIGDIQNKYGVQISYDKAWRAREFALNSIRGSPEESYGALPSYCYMLEQKNPGTITDIVTDVD
NQFKYLFMAFGACISGFRTSIRPVIAVDGTFLKSKYLGTLFVAASKDGNNQIYPLAFEIGDSENDASWEWFLTKLYDVIG
HVDDLVVVSDHHGSIEKTVQKLFPHASHGVCTYHLGQNLKTKFKNVVVHKLFHDVAHAYRMSDFDTIFGQLEMISPRAAK
YLVDVGVDRWARSHSNGKRYNIMTTEIVECMNVVLKDARDLPVVRMVEELRNLLQRWFSNRQQQALSMKTELTTWADMEL
RLRFNKSSGYEVEPINSWEFNVKYAGVSNQVNLQTRSCTCRVFDLDHIPCAHAIAACRYGNMSCYTLCSQYYMKNSLISS
YSKSIYPTGNNKDWVIPEDIRCRVVLPPKSRRPTGRPRNERICSGGETKRTRCCGRCGDYGHNRKTCKRPIPLHPRDEHS
CVNIVESNINIQEFSLQPVHQSL
>Galileo_DW#DNA/P 1047-3701 [Drosophila willistoni]
MRSYRDGSEHFPVRMFKFPKNEFVRRQWVSKCNLQYDVNIDRALICNLHFEKKFLGTKFLKAGAIPTLLLTDEPNLNLIA
TDAKIDLYDFCEETHEEISTFQNIRKHGAEPTNILENIDNNTEKVEDISDISTDCMQFCSNCLKKEQNEAYYRKKCFEMS
ENLKKEIQKVKLCNKKIRHLRNVLRNERARKLKYLKEKKKIDIQGLIDKKCVSKNSNTVCKMLLKNKQSWEDEEKIIAQS
INFYSSKAYNFMRDDLELNLPCNKSLQRWAPVRNMVPGLNENLLKHLKGIFLKMHNKSKNSVLVFDEISIRKGLQYNSHR
DEVEGFVDDGIEKTDALCKQICVFMVRGLYDNWKFVLSYVATSTGLSSSILTELVNTNIRSAKSLGLIIRAVVCDQGPNN
RGAFNKFGIKNETPYFTVDGQKIFGIYDVPHLIKSLRNILMRNYINTPDGRVSWQVIVKLFEIDTKNTSARMCPKLSRKH
IYPNSFEKMKVKYATQVFSQTVASALKTLIQNGTFHDCEDVAIATCKFIEKINKLFDCLNSNNLFDKNPFKSAIQKESDI
EKYIIEMKNYLKKCQYPKKIFCMDGIILSINSILMLLQDIWSQGEGVYFLLLSRLNQDALEHLFYLIRSRGGTNNNPMLF
EFNAIISKMLSMKIITSRTTTGNCQADEDLLINVIEDTKHELAIDNINDQDRVCYEDVNISFDLYDDDMEGTEADEIQDT
TLSIASANALRYFTGFVIHKSQQKFNCENCKELVKENIVLYDQSEFFIFNKNYKILNNNLKLKNPQDDFFSLMKMHYNIF
HNFFQKFPHARNIRQQIFNECIMRAENDKKYEDWYCESSKCIEHRKYILNYFLVVLLKKNTIWLLEKLCGASEKSVRKIE
ILKS
>31221170_Aga#DNA/P gi|31221170|ref|XP_317015.1| ENSANGP00000006612  [Anopheles gambiae]
LNTENKLLQKKILFLKKVHDKKQKSTTKISAIKNLLKNTLSANQIDLILNRKKRVIWTKEEISAALTLKYLSTRAYKYLL
KDLKYPLPSFSTLLRYAKKINLSQGILEDMIRLVGTLSNTWEPRDRECVLSFDEMKICKMMEYDQATDEVVGPYNYLQVV
MARGLFHKWKQPVFLGFDKKMTKDIIVTLIQKLAEQNINVVAIVSDNSSSNLGCWRELGVHNPIEPYFKHPKTDKNVYIV
PDAPHLLKLLRNWFIDHGFLYKGQVIKADLLFDLVAKRDQAELTPLYKLTRNHLIMTSHEKQNVRRAAQVLSRTTAISLR
QYYPENDEASKLADFIEVVDLWFSISNSYTPFAKLDYKKSFTGNENQKKALQDMFDLISTMTIIDKAGMQIFQKSLLMQI
TSLSLIFEDMQQKHGITFISTHKLNQDVLENFFSQLRQLGGVYDHPTPMSCLHRIRTIVLGKTPKENENDGYREERNDDY
VLAELYSSGDIMPTLDEPEGDAEDFLSSDGSSLSSTMIELPEQDSDGLEYVMGYIASRHADKFPELDLGKQSLHFTTDHS
YSFPPSFLRHLSIGGLFVPSESFLKQGFKMEKIFQKLHPDGKLTKTRGIVQKLTNRIVKKMPEIPLPIISSFAKQRICIR
IKYENIKIANEKNQQSKRGIAGRSKSAK
>HARB8_ZM_tp#DNA/PIF-Harbinger 621-1963 via tfasty with MTIS112A_tp, 1 frameshift and 1 stopcodon HARB-N9_ZM_tp identical. [Zea mays]
MSPSHTEDEFASSDSSDSEDETLLLVNLLTLNIAAQHHHRRRSGLPRRVIHRDHFAGENLIQHHYFAANPVYPPHVFRRR
CALHTFVLCYHLFKFxQLCNTIYIGYRMSRPLFLRILHGLQQHDIYFTQRVDATGMPGLGPLQKVCAAMRILAYGLPSDA
VDEYIQIGESTARECLHHFCRAIIACFSAWYLRTPTQDDITRIMHNSESRGFPGMLGSIDCMHWEWRNCPTAWRGQFCGR
NGRASMILEAVATYDLWIWHAFFGMPGTNNDVNVLHRSPVFDPITTGRMPPVNYTVNGHAYNFGYYLADGIYPNWPTFVK
AIRHPYEEKKVYFTQMQESCRKDIERAFGVLQARWAVLRGPAYGWDRNRLTEIMTACIIMHNMIVEDEGPFAANIDFGDN
SSRIDSSQIIAEGRAEWVINHFDLRRQERSCSLQNDLVEHLWTRRGSM
>Harbinger-1_DRh_tp#DNA/PIF-Harbinger 382-1533 via genewise with Harbinger-1_AMi_tp, 2 introns (767:821, 925:989) N-term truncated. [Drosophila rhopaloa]
FWEKDVQENNEMFFKESFRMEKRTFSFLVDRLGVLRKKNTNWRKAIPLEKRIAIALYTLGSSAEYRSIGRLFGVAQNTVC
KILHEFCGALILEFADEFMSPDYLTPEKVDECVKGFEEIGFPQCLGAIDGCHIEIKPLAAEAVDHHNYKGWYSIVLFALV
DYRYRFTYVNIGSAGRCHDSAIFQKSSLARKMVSSPFLQEKSREICGVQVPVLLIGDSAFRFSQTLMKPYPFSTTASEEQ
QHFNYNLSKARRVVENAFGHLKARFRFIGKGLDSHYKNNNAVILACCILHNILNEHNSAINDAWQQTASDLREQPNRTNM
SADFSPPAEKIRSAIAQYCLNGTE
>Harbinger-1_Crp_tp#DNA/PIF-Harbinger 576..2372[Crocodylidae]
MPPQGCLALLGLQPRRLWACWASQDWWRHIVQHTWDDEQWLEAFCMTQATFRDLLEQLRPHLERQDTGMRLPLPADTRLA
LALLKLATPTSLQYVGHLFGVGKATAREAILEVCGALQDVLGDTVLRVHDPLAVVVAGFRALGFPQCIGALDGTHIPITC
PPHGDRPYYSRRGFHSVVLQAVVDHRGAFMHVSAGWAGSAHDAHVFRNSGLPGLVESGRFAPGVPDLQLGAVVVLPLLIG
DPAYPLLPWLMRPYTGHLDPRQAHFNCAWAGPAPWWSAPSATSRAAGAPSPPTSSSPRTTSPGSSLQPVCCITSEARGEL
FREAWAEEARQRRTPGSGSTTCGSSGSPPLPRPQEAAHPPAGARAPGAGGAGRPPPPALPALAHLHRRPRTPTPPAHPQH
HAHCRHVSEEQVFIPLTSNRAPLPPTNRAPPPPTPPTNKTPSSLCKLFTMSFVCCPGVGAVGWGHLGAEPGDRRPAPRPL
AVPPRVRMLRRVRRAGGSPRGDGGRCSPGAGGSPSGSQCPGPAGPACGPGPAAGSSGSAPAWSRGEWQAGPRRGGLGGMD
RGGGRARGSWLLEAAQDLLPGPGGGLLLGGGWLPGGRRG
>Harbinger-1_DW_tp#DNA/PIF-Harbinger 964-2779 via genewise with Harb_Cis1_tp, 1 intron (1248:1902) [Drosophila willistoni]
MDSDEEFFASAAVINVVMKKTTGIHPLNRNRLKGEFNSLYKNLRQYPDKFFNYTRMSINTFDYILTKIHSKLEKCWTNFV
VNPITPCEKLILTLRYLATGASFTSLSYSFKIGRTTVSVIVKETVKALWEELQPKHMPQPSKEMITEIADDFWKLWNFPN
CAGAIDGKHIRIQCPPHSGSMFYNYKKFFSVVLQGVADSNCKFIAIEVGGYGKQSDGGTFNASQFYRQLKSRQFMPPDTN
LPGSSIKMPYVFVGDEAYPLLETLLRPYSSRTINAEREYFNKRLSRARRCIECAFRIMTSKWRLLWKPIETDPDFVDIIV
KAICILHNAIIDLEGSPNVNQDTHTSNENNGSEELFHPTSYRSGQLVRDAFCSFIVQIGFDIKNPQI
>Harbinger-2_AMi_tp#DNA/PIF-Harbinger 461..1882[Crocodylidae]
MAAHLPDADRDHTAAWALVRALQQSRLNLWASCQRAVAAQQHHYIQTARSGTRVTCLARGCEYQLALLGRSIPMLPAPAA
ALRPTTARSDPTEGAADNEDPVITPRMYRCTWAWATSKHWWECIVLPTWDDARWTQTFRMSRGTFMHLVAQVAPNIERQD
TVMRPALTPEKRVAIAIMRLATPASLRYVAHSFGVGKSTAGQAVLDVCGAIQDTLADRVIRLADPGEVVAGFGALGFPNC
VGALDGTHIPILRPPGGGRQYINRRGSNSVVLEAVVDHRGRFTHIYTGWAGSARDAHVLRHSPLPGLMQARTFAPGIQDL
TIGDVSIPPVIVADAAYPLLPWLMRPFPGPLDARQQRYNEALARCRCTVEQAFGHLKGRWRSLATRLEAAPQHIPCIITA
ACVLHNVCESRGEVFEPQWMEETCXVSQRTQQQLQQSRPARHSVADEEHPLQQRHLGARVRDAIASHLLAHPSE
>Harbinger-1_XT_tp#DNA/PIF-Harbinger 324-1765 Via genewise with Harbinger-5_XT_tp (1 frameshift, 1 intron (1019:1286) [Xenopus (silurana) tropicalis]
MEYAMGFLLDLEEEQQDPQPSRVMRPRLFRERATLEGLSEDEVVRRYRLNRAAISSLYELLEPSLQPLTRRSRAVPGMVK
LLCSLHFLATGSFQRVGGVFXGVSQPTFSRCLGQVLDAIRSVSRNFISFPQHRNEWNAVKRDFYGVSGIPNVLGAIDCTH
VALNPPQDREHIFRNRKGYHSLNVQVVCDGHMNILSIVSGFPGSSHDAYILRQSALYQSFETGQMPHGWLLGDAGYPCCR
WLITPIHRPRSRAECAFNEAHVRARSVIERTFGVLKSRFRCLDKSGGSLMYSPTKVANIVAACAVLHNLANRHGLPGDVA
DDLEDPIHPQDPVRGADARGSEVRGQIVTNYFSCKYLQSLIPYTRNTKQLLQKKRFIYREPTSKRNGLSR
>HARB-3_Mad_p2#DNA/PIF-Harbinger 2857-3201_R [Malus x domestica]
MAREHVRGRNWTFEEDVSLCLAWVSVSEDGAVGTNQNKKVLWDKIIAKFQENCNGGGRDGGGVYDRWKTINKACTLWKGS
LERAMVGMPSGRSAIEIVSFFLDILFVMYIILFCN
>HARB-1_SBi_p2#DNA/PIF-Harbinger 1375-2112  [Sorghum bicolor]
ASAWLNASKDPIHGNDKKGDTFWKEVTDEFNRKGNGKRTREINQLKIHWSRLKSSIGDFNDYWTKVTQMHTSGYSDDMLE
EEAQKMYANRFGKRFTLVHWWKILKEEPKWCALFETEKDKTEVVDIPEEQTRPIGREAAKAERSGKRKKANVMEGIVILG
DNIEKIVKVQQDRKVEREKVTEAQIQISNANLKAAQEEKEAKMFEVYNSLLXQDTSNMSEDQKANHERAIRKLEEKLFGT
KVSSEI
>Harbinger3_DR_p2#DNA/PIF-Harbinger 3534-2899 (rev) Possibly longer with intron; no matches outside this region. [Danio]
MCVRSKKFRCMKHCVRRIPRIFSLYIRINVKLSARARAQNPSLPPPPYKYGNDFTLAKPNEKAMAKANKKRNFTECELEV
LLSEVDRRKTVLFASLSSGINNKRKKIEWESLADAVNAVGSERRTVSELKKKWSDVKVQVKRRTAAHRQSVDRTGGGTGD
TALTPFEERVASIVGDTLLSGVVSVSVGDTDVLEEAHEGKLLLILCLNFVK
>Harbinger-1_Crp_p2#DNA/PIF-Harbinger 3657-4484 R [Crocodylidae]
MPVPTTRGPNWSMEETGDLVALWGEAEVQRQFERGGRSNAHVYEGLSARMRERGHDRSARQCRIKVKALRAQWVAITDHN
RRSGSARKSMPFMQQLTDILAPRDPGRSRAVYSSTGGLPEPPPRPGTPVTRHRGRAPRAPAARPTELPAAPSTSSSGSPG
QRLPRQLRSPSPSHEAQPAMTPPAASSASSSPGGRPPARRPHAAPHRLRTLHAVTAAGTARSRQPRQPRPRGKPRTGGRA
LPAPAPPPRPARPHSPGPGFPPPTARREAGDSAKLY
>Harbinger3_TP_tp#DNA/PIF-Harbinger 420-1856 [Thalassiosira]
MDRFMASQLSIDGTGDSNLDRDIPPQRKRNSNRFAFQFGDYLDCNYYRKFLCQDIRDVTYEKSQDRKSVFRSHFRVPLKT
IDDLTEMHIRNGWVRYTGRVRTNFQLSIRTQLFIMCALEHMGNRKPHCQFETETNMSASSHLHFFNNFIVNMYSVRSEYV
FYPRTMEELQVTVHDYESQHLPGAGGSIDVVHVKWSNCPAGDYNKCKGKESFPSVAFECVTNNRRRVLGISPIQFGARSD
KHIVRFDPTVELIKKQWYKDVEWEYYTSDGELKKDKGIYFICDGGYLRWKSLICPYAGSXEIGQRGYFNTNLESIRKDVE
CTFGILKKRWRILDYGLHYYNMKKCEMVFTVCCIMHNILLDVGEDQGLNYVNPVGRGGPIGRDGLFLEGPVELQQRVGRD
AITLRGMKAADRADALRWMARRDLLAAHLEYCKRH
>MuDR-16_SBi#DNA/MuLE-MuDR 667-3043 via genewise with OSMU6, 1 intron (1405:1474) [Sorghum bicolor]
MASLRNAVNCSTTQCPVAWFYDKRLSQDVMLENQFQINDMFEMYKEEMHCHIVVGVFDQSVPTIDQFDELDLPPDTSTGN
PASTDSYVNQPTFEADVAPEAEVETQLEPDREPDMFDNDEEYVGCDDEGMYMPTPPTQPPSNSPPHASHDAENADADAFP
VEAEVTDADPEEINIIHDPEHPKIVKGELFPNIVSFRKAIRHFSVTKGYVLAGIKTDPSRFIAKCKSEGCPWRIHASRLX
GRKTIQIKVLPADYNCASQKLVEGKMASQSWCVDRLADWIKKHPTKRAKECREKLEDDYGIKLKYSKAWSGMQCALDQIH
GKYEESFQLLFNWGAQIEKVSPGSTVVVEVDKIGKKNRFKRMFVALKPCVDGFLAGCRPFLGIDASCLNGKYRGQLASAT
SVDGHNWLYHVAYDIFDIENEDNWTWFLQLLSRAIGPVPNLVVCTDACKGLENAVGTAFPTAENRECMRHMYQNFLKHYS
GDVFTDHLYPAARSYTQEKFQWHMNQIHEYAPQAIEYIENYHSRIWYRCGFSESSKCDYLTNNVSXSFNAQVKHLKGLLL
HELVDRIRELIMEKRYLRKKVARQWEDGILPNVMKDLNLISTQLNVVKVKVSDDNTAEVTILEWEKQRRHTVDLGNHNCS
CRQWQVTGKPCKHALAWILSIPGMRIEDYVHEYYSVARFKAAYADRIEPIPDNDEWPVVNLGFKVYPSLLGRGPGRPRVV
RIRGTFEQRATKKKVRCKRCGDFGHFSKTCKLPELGEDGERGQGSSKRY
>MuDR-11_SBi#DNA/MuLE-MuDR 738-2805 via genewise with MuDR-3_Mad#DNA/MuLE-MuDR, 1 intron (2290:2372) and 1 frameshift [Sorghum bicolor]
MTFESEEKAYEMYNTYAGKVGFSIRKSKTKRREDGSICQKYIVCSNQGYRENESSQKDVTRTGCDARVQFSVSKEGIWRV
QKVVLDHNHYLASPNKSHKLRSQRQVTEADRKLIGQIREAGMKPAQVYEFMKEFYGGEDKVPFSKMDCNNEIGRERRQYL
EANDAQTLSEYLRNKQLQDPTFFYAVQVDKEDGRIANFFWADGQSIMDYKCFGDAVSFDTTFQTNKFEMPFAPILGTNHH
KQTIIFGCALxFNETIESFVWLFETFLTAMSGKHPSTIFTDQDAAMAGAIAYVFPNTSHRLCLWHICLNAAKHLSHVIHE
SDNKFLPDFKRCVYEDRSETYFIEKWHELLAKYNLENNSWMANLYALRAKWAAVYRDSFTADMNSTQRSEGMNNVFKKRF
RRKLGLSELLVECEKVAASLRANELDADFKSRRKNPVTYIPNLPMLNTAAESYTRRMYSEFEEEFKEQFTLSCELLETAG
TNLTFLVKHMQSNRGATVVFNTEDTTITCSCRKFESIGILCKHALXVFNVNGVYNLPPQYILPRWTKYAKTGFYIEKQGT
EKEGLKTRAARISRKATSLALKCSPSKELLDELEKAIHKLDLEADTYLSEMQEKSNEVPPVPTECATDPLNGAISFKIPQ
VIKGPKNKRFKNAVEKNTAKKK
>MuDRAVI1_tp#DNA/MuLE-MuDR 2519-4634 via tfasty with 6175165_Ath, 1 frameshift. Still a fragment. [Vitis vinifera]
MMLSRGFASRAADTEYIPLESIRFREAILGSGHTFKNAEEFRNAIYQMSLGGRFEYKYTKNSPTHMSVKCSVDGCPWKIT
AHAVEGNVILRVHTYQVNHNHIAQDECSLKVKVSSKRGAVVVEDVFRTTPDYLPRQICKDFERDHGVQLTYNQAWHLKEK
AKERIYGVPRDSYTFLPWLCHRLREINPGTIAEYTSQEGHFMQLFIAHAFSIQGFIMGCRPVLAIDSCHLSGPYKGALLS
AIAYDADDGMFPLALGVVSSENYEDWYWFLDKLKGVLDGKEVVIISDRHQGILRSVSELFGTGNHAYCYRHVKENFSSFF
NKQTIRGKKGKEDALLLLDSIAYARLEIDYNEAFEKLVRFNENLAKWVAENNPEHWAMSKFLKKRWDKMTTNIAEAFNAW
LREERHQTIYTLLLMHMDKLVAMLDSHMRDTQKWKSVVGPKTEEKLMSNIMRSGPISVLPYLGGTFKVFTGEVYLVVDMN
QRTCTCMTWQMSGLPCAHVCAVIRTLRHDVYDYIDPCFHVSMQDLIYSGQFQPLPTHNMPKLCDDRGYVIDCAGNSFPAC
QPPHVRRPPGRPRRLRIESQFCHKRAIHCSRSRIEIGRNRSNFGDISEKYRLSVGSDTIFVTDYRSTDISIIFQKYLRYF
GIYRYSYRFFGKFPDISYQSSPRTGNKICPIFFKTLLFGNLIMICRQRLCFSAWLKNRGFRVREI
>OSMU5#DNA/MuLE-MuDR 651-3387  Via genewise with MuDR_ZM_mudrA, 1 intron (1536:1623)  [Oryza sativa]
MDASAACRVDVRVGPYVEFDENGRPDYHVSRDIKWVIDKDTICWIDLINDLDGEVKHSYLQEITVTYWDKNVERYAEIAS
DSSLLDAFDMYWEMRRLPLLVNVSDDPRNRTEPCMDQGSIDGPASTVAGDGQVACTDIVLATQESQVIASKRSKPSKPTK
PKEKVDDWGESDEVEYVGVDDEKEKYNDLVSDDEAVDADYDPGSDEDQDDLAVDDEEGCESVAHVTDVDNPKIAVGVTFE
DGNCFKRCIRQYAVLKEVELAVPYSESRRYRAYCKAKRCKWRIHASRLPDGRTWQIKKLPYAHNCASTAGLENNCMATNS
WVRDRVINKLRQEPTLGATALKKFLEEKYKINISYYVVWDGRQMALDEILGKWEDSFDAAYNFKAELERTSPGSIVEVDH
VTVDGKNHFSKMFVALKPCVDGFLNGCRPYLGIDSTVLTGKWRGQLASAIGIDGHNWMFPVAYGVFESESTDNWAWFMDK
LHSAIGSPEGLVLSTDAGKGIDTAVTRVFTNGVEHRECMRHLVKNFQKRFSGEVFERNLWPASRAYRQDIFESHYNEMKE
ACPKATEWIDNFHKHIWTRCQFSTLSKCDYVTNNIAETFNSWIRHEKSLPVVDLMDKIRQMIMERMSVRKRLAVKLTGTI
LPSVMKSLYARSRDLGYKLYSAHSHLGEIGGTGRDLKTWRHTVDLNTRECSCRQWQVTGIPCTHAIFLVISRRGLELEQF
VDDCYSVATFKKAYAGHVVPMTDKSQWAKINVGFKLYPPLLKRSAGRPRSRRIKGMEEGGSGKRKYRCKRCGQFGHIKKT
CNEPVADPSAPPPAPPKPKRKRVKKVVLSVQDPVIQVPTATVYVVNSKISFLCHTFAIFTLHIYVDFHFFAGPHLQDHKH
LG
>MuSHAN_MT_tp#DNA/MuLE-MuDR  674-3619  [Medicago truncatula]
MRKMFRERQNKILSKIPEMSNRLRLKRNQTLMELPSMLKLQSMLAAPVSSHFKPTRSTRLRFFSDDVKSKDRDELLEWVR
RQANKAGFTIVTQRSSLINPMFRLVCERSGAHKVPKKKPKHARTGSRKCGCLFMISGYQSKQTKEWGLNILNGVHNHPME
PALEGHILAGRLKEDDKKIVRDLTKSKMLPRNILIHLKNKRPHCMTNVKQVYNERQQIWKANRGDKKPLQYLISKLEEHN
YTYYSRTQSESTTIEDIFWAHPTSIKLFNNFPTVLVMDSTYKTNMYRMPMFEVVGVTSTDLTYSVGFGFMTHEKEENFVW
VLKMLRKLLSSKMNMPKVIVTDRDMSLMKAVANVFPESYAMNCYFHVQANVKQRCVLDCKYPLGFKKDGKEVSNRDVVKK
IMKAWKAMVESPTQQLYANALVEFKDSCSDFPIFVNYAMTTLNEVKDKIVRAWTDHVLHLGCRTTNRVESAHALLKKYLD
NSVGDLGTCWEKIHDMLLLQFTAIQTSFGQSVSVLEHRFKDVTLYSGLGGHVSRYALDNIALEETRCRETLCMDNDICGC
VQRTSYGLPCACEIATKLLQEKPILLDEIYHHWLRLXMGEESNEVAFCVEVELKAIVERLKKLPFQMKLEVKEGLRQLAF
PETTLMSPPPRKVPTKGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQPSPSPTTSSYKRKKGARLGKTSLSPLPP
PTRYPKPKAIPVMSPIDYMPRFMLPFIEKVVDVIGDGHCGFRAIAEFMGLTEKNHLMIRTHLIQELIDHRDDYVEVFAGE
DRYNYILNGLHPPANTKTCAHLVDKWLTFPDMGHIVANYYKMCVVVLTNLEVGNSESFFPLRGPPPPGNQKTPILCLGAI
PNHFVLISLKNGCPLPPSSTEWHNHKKEDAVTWEDEYLDQHELFRKLMAIESGNKPSKPQKESNKAAPILLDTPEKPKQQ
FEVIAEDEEDSMSLDLLQSLGL
>MuDR-4_VV#DNA/MuLE-MuDR 1159-3603 [Vitis vinifera]
MLLYEGEWVRDGNVFYFEGSKGKGIEIPKTISYKELLGVVHHILKLDPTNCFLSMKYVFNANIPTSPIQLTDDGDVKFFI
GLNCTNGKLPVPLCITVEKRIDNHNQKSICNSYFECHMSSEIDKELNGDSMLMHKSRHIHCDSVETLTVDGENGPRFQNE
SLEGYKVHDWNMNETAINEEDYRMNTNPTSDKQVTQIGSFRTGSAQSAEILTMIDTNDGFIHDNPTIIEDVANERQNMMQ
QPIVSGISDDHLEEHQIYSSKKELQRKLYMMALKRKFEFKTTKSTTKLLLVECFDKECKWRVRATKLGISNMFQIMKFYS
THTCRLDMMSRDNRHASSWLIGESIRETYQGVGCEFRPKDIVADIRKQYGVQISYDKAWRAKELALGSIRGSPEESYNTL
PSYCYVLEQKNPGTITDIVTDCDNQFKYFFMSIGASLVGFHTSIRPVVAVDGTFLKAKYLGTLFIAACKDGNNQIYPLAF
GIGDSENDASWEWFLQKLHDALGHIDDLFVISDRHGSIEKAVHKVFPHARHGVCTYHVGQNLKTKFKNPAIHKLFHDAAH
AYRVSEFNFIFGQLEMIDPRAARYLMDIGVDRWARSYSTGKRYNIMTTGIVESLNAVLKNARDLPVLQLVEELRNLLQKW
FVTRQQQAMSMSTELTMWADGELRSRYNMSATYLVEPINSKECNVNYAGISAQVNLDTRSCTCRQFDLDHIPCAHAIAAC
RFYNISCYTLCSKYFTTKALLSSYSECIYPTGNEIDWVVPNHIRDKVVLPPKTRRPTGRPRKVRIPSGGEGKRTSRCSRC
GQYGHNRKTCKRPIP
>MuDR-6_SBi_tp#DNA/MuLE-MuDR 1022-3457 via genewise with MuDR-5_OS#DNA/MuLE-MuDR, 1 intron (2564:2740) [Sorghum bicolor]
MEFDTIDEARRVYNAYAFKMGFSIRIGSSRSSRVTKQLIRKEFECSHARITPGEKEESASSNASSSAAATSKKKSATAVM
TTATRKRSTLKKADCKAHMAVGLRNGRWRVVVFQAEHTHPLVKIKGRVMQLRSHRRISWADYELLKTLHHRNISTMQIMA
VLGDFHGGVGNLTFNSKDVSNMRTHLRAGLRYRDMDAVLEYFQKLQAESPSFFYAIKLDAENAVRGLFWVDGRSRELYKC
FRDCIFFDTTFCTNRYNMPFAPIVGINNHAQSILLGCALLPDETTETFVWVLQTLKDAMGGIAPTNIMTDQDRAMKAAIA
QVFPSTTHRCCKFHVVSKACEKFGWLIRNNPEFADEFDYCINFTESPEEFETLWHNIGVKYDMHSNDHFQNMSSTKSMWA
PAYFKKCFFPFTSTTGRSESMNALFKTMVHPQDSVLQFLTQYEYIMETRIEKEYREAAKGETTNPPLWGRSQIEKQVSKF
YTRSIFFKFQELLRDSTALTIDSIAKEGSQMTVQVLKRVYKEGEVTLKTYNVAANQGSETYTCSCNMFDQDGLLCPHILK
VFTTLDVQHVPQKYLLHRWSEEATLKVPQHLSGPEPVFGVPATNKLRYNALCRKMTQLAADACVGPEEYMVGSQGIDHLR
EKVKETTKALISRQNDPPNVVEGAKEVERGVKQTKFKNPPAKDPQGRPRNKVDRKKTIVQQVKEKAIKKNKSKAKKDKAK
ESVCLVCHEEGHGVETCKFLSAAMHLRDTELKL
>MuDR-7_SBi#DNA/MuLE-MuDR 481-3333 via tfasty with OSMUD1, 2 frameshifts. [Sorghum bicolor]
MDPLEFLAVRFHFDGQFYNDGRRLHYIGGKEELSFVEIDKMSLPEIQGHLKDHYNCSDPVTLHWLFPGKMLSNGLRVLMD
DKACMDMCQAITDGGAADIFVERVVEDHAEQSVNLEKLSAYISSPEKIEKEVAQYSKYIDWIRDSDDGNEVVKAKKSLMQ
EVSVNDSAPVEEGYSSHSDDSDQSYLPGDDESSEDDEEAGQIRADLKELKKKLSDRGMVVVDDQGHEVNVENLMPSNPFA
EGVGVESDSTEVDTDEDADSYDEEEGEVIRKKREFPRFDGSAPVPTFSLGMSFPDKATFREAVIKYGLAARKVIKFVKNE
AARCRVVCTWPKCPFVLLLSKTSRAESWQLATCIDNHTCPPRRDNSLVTSRRIADKYERMIKANPQWSIQSIRETVQEEM
FADVSVSKIKRAKSIVMQRMYDATKGEYAMVFDYQLELLRSNPGSTVVVKLDTEEAEPTFMRFYVCFDACKKGFLAGCRK
VIGLDGCFFKGLTNGELLCALGRDANNQMYPIAWAVVEETKDSWDFFLALLSADLKFGDGTGWVFISDQQKGLINAVNKW
APRVEHRMCARHIYANWRKKFTNKKYQKLFWRCAKSSSMNLFNYNLNKLRAETPKGADAIMQTDPEHWSRAWFKLGSCCD
SVDNNMCECFNHWILKARFLPIISMLEGIRRQVMVRIHENRTKAERWTGPICPNTYKKLMTYITASGFCHAISNGQNCFE
VTYWDHRFSVNLEEKTCSCRFWQLSGLPCPHAISCIYVASKAVEDYVAKCYFVEEYNKTYAHCLQPVEGREFWPVSDRAK
PLPPKYVRMPGRPKKERKRQDGEKKSQVGGKLSKHGTVVRCRVCKGIGHNRTTCSRKTGSGGSGTGANVSGGGQVPSGSA
RGSHHARGGSTSGARGNDSHSTRARTGNSKRKATPSSTSVSTKRHCSQLSVDCNVSKVSTILYEDTIVPNG
>MuDR-8_SBi#DNA/MuLE-MuDR 702-3395 [Sorghum bicolor]
MAGEDKLSIRFHFGGSFVNLNGYVTYVGGDLGVSEIDVDKLSYFEIKGHLADHFPTDNILRLYWLKPGMEMRNGLVLLVD
DASCQVLLEQHTPRKWVDMYTEDVGMELTADDQEIWAGDDEAADDEVEDDVMAAVDEATQYVSDDEVVHEFQDQEYKAIC
EGAYDKGKQVMPEYDDSSEDESDEDYVLPADEDSSADDEEAIEMKKFAYEVKMKAKGKKIGIHGSQLNLIRVEDLVDEVP
NLDEPGSPYLDSSEEYSYEDNSEGETVRWKSLENRYDSKAPVPIFSLGMCFRDSRQFKKALIKYGLKTHRHLRFDKDEKA
KVRAMCTWPGCNWKIYGSITTKSEWFKVATFHDVHTCAPRRDNDLVTSTLIAKHYYQDIKDNPTWKVAHIQNRVQKDFLA
DVSRSKVKRAKSIVLNKALDVMRGEYTRVYDYQMELLNTNPGSTVVVCLDPEEQDRKVFERFYVCFDACKKGFLAGCRKV
IGLDGCWFKGANNGNLLCAIGRDANNQMYPIAWAAVPIESYDTWYWFIGLLQKDLNISNGGQDWVLISDQQKGLLKAVKE
LVPNAEHRMCARHIYANWRKKYTDKKLQKKWWRCAKASCRTLFNLYRAYLAKDTPEGAQDMMSTDPQHWSRAFFRIGSNC
DSVDNNICESFNNSIMDARFFPVISMNEAIRKKVMIRIQENRSRVEKWPGTICPNVFRKLKLNIERSRCCLVLWNGADGF
EVQEKEDRKYVVNMVKGTCTCGYWQLSGLPCCHAISCIYKASKKLDDYIAPCYTIDAYKKTYAHVLQPIEGPDNWPTANM
PRPEPPAFVKKPGRPKTERRREQGEEPKGTKLSRVGIKMRCRICGTTGHNSRRCPQNPEAGNKGNAHIRRARTEKRKNAE
AGTDATASRNTKKQKVL
>MuDR-7_ZM#DNA/MuLE-MuDR 1034-3078 4 introns via genewise with MuDR-5_OS [Zea mays]
VPKVGMTFSGVDEAYKFYSRYAYEVGFPLKKYRERKNCKWLNCSMEGKRAVRGISNPKVRSTSSKRTQCKAGMKLKKIYD
DAKETVISVRIDLLHLDHNHEFFKKDTEKNQLQCNKTHDPEYMEFISSMQESRIPQHCIMDYVSEMHGGPESVPVTAQDM
YNLKKAKQRERNANDVAKLLSFFASCKKDNPQFFSDFQLDKEGKILSIFWSHASQQGDYMDFGDAVTFDTTHKTNLYEKP
LGMFVGSNHHLHCTIFAFALLGDETVDTFEWVFNAFKTCMGTEGPRVMLTDQDPAMPVALERVFPHTIHRLCLWHVQNRY
MPFLNELYARFEEMDFKTRFQSIIHHPLTELEFETAWSMLLEDFDLHDNITLDKLYGIRKDWVPAFFKNHYCGLMLSTQR
SESMNRLVKSAHVDANTPLHQFAKQMMKLLHSRKMKESKEAVGSMGQKETNTLYMFEIRVARAYTRAVMNKFQESLKYAT
AFKIMHDEEGGANDWVVQHTTRSNKIVWGQHQFKVTADEDAGKYTCECKHWEHTGLFCVHVLRAFMHLQIDRIPKEYILQ
RY
>Ricksha#DNA/MuLE-MuDR 963-2399 [Primates]
MEEICEIVPSQKGCDKLSVRGYLMVKDKSLKANYYWCCESRKSLNCNGRAITRLSNGQHILTKFVDHNHSPNTSAASVSK
ITEVKTQAKNTRNLPCQIIQSCTTSAPSHIAPCLPSKNALRQRIKRIRQAQRPSEPKTLADTEVPPVLQNTLNGELFLIR
DLTVEEDRLLIFTTKSNIEKLAHASLWLMDGTFKTVPTVFYQLYTIHAPVGSENSRTYPLVYVLMTGKSEALYKRLFEDL
VDFAEENGFQLNPQTIMTDLELGAIKASKSEFQGVTNKVCFFHSAQCIWRKIQMSGLATRYGNDENFSLKMRHLPALAFL
PADDIPGAFNELKPHLPEEASEVTDWFENNYVHGRIRRHLRNGVAVRSPVLFPPNLWSVYECMRNGFPRTQNNIEAWHRR
WENLIGNAHVGVYRIIEEFQKEQRHVENECERILRGEPCPKRKKAAIHRDARLQNIVNDRESRPALMDYLRAIAHNLSL
>NOF_FB#DNA/MuLE-NOF 704-3874  [Drosophila fruit fly genus]
MPAKPQVDGHTLVDAFCCANIFTETGALKPRSDKVWMDISNQLKGAISAKTLNFYARINRNNMITVVKERCGIQQLDTSA
NLTLNSTFPDDDPEFQITEASKNGPLPILYFNLELDLELWRSIAPKKDQKTEKLQPNWTDTMAKLIYKKVPLPCAFNFRK
AKLSDKVDNIWLRIEGYCNDCSSILKGHCLVKPDEQCGIMISVSVPDTRGIPHNKKRRCTGSRRLEIGNELILKKAALWR
KEATDNMNDDDPEPSYIPNLPTLRKLREEATNRHLGITKDRDPVSSLYLKKYEGELAGCILDIGLDEFFCIYCTGTQVKT
YASRIKTIRKISIDATGSVVLPIQKPNGDSSYVFLYQIVMEGDDSIFPVFQMLSAKHDTASIQFWLSRFISKSGHFPLEV
VSDFSLALLNGISLSFNECRIATYIKKCFHSLLMEERTDLPPCYIRLDIAHLIKMICRKNVFKSKLPNLKDFYTRCIGLA
TTCETKDSFAELIKSVLIVALSQSSGEDEKGDILSSYRNEKYLLARIATFTAPDHKETIEDNCIPEDQEEIDEDVTDFIS
NIKIAAEEEALNCNSVNCRPNPYFLPELMPPLIKLCKYFVLWTNVMKEKFCSKYDVGSSALVEAYFKDLKNTDMSIFHRP
VRADKFVVQHIRCIEAVCKLERAAMKRKTVKTPSFIKENAPKKMCSKETKGFLEEILEESEVEYLLQEENWKVKNKTIKP
TEGNDAEDNDTDDENKEMDLSEQPKEKPRGKYLKKCPNVELLYNRPHRRKQDEILHNGGSMGPVWIGKQLLQFKNTCPFD
SLVEILSTAYIDNFYYKSLLDDFYTDNLTIELVKKYAVEGVSSSLYCDRGLVLKSFFDEKHQIIKCDANIGSFIEKALNG
VPSASSHRTHIKNNHDCRNQKYIHHRLEVIDVEKVGHLDVQEVVIPFIDEFFARTDGECKICGGQQILERQPGPHVILDI
EFAMDAFHQIHHNGLPGTTTLLQVPEEILIQEKKYILSGAIEYVPAMGGEIGHYIAYCRRVIGSWEVHNDMCRQWKKFSA
LNTKMTLHILIYTRKN
>MuDR-1_BF#DNA/MuLE-NOF 7183-8910 [Branchiostoma floridae]
MARLQEAQSYEQDDIVSIGPGIFQVKSSSKRGQQHTVNFGATSTNMPSCTCRDWLKHKLPCKHFCSVFNLQQEWGWEKLS
AVYRDNPLFSLDSTLLSSSSSTCTSSEMDEMDDSSSPSLTSTADPPPPSPTPSPAVYGELPVNKPKRTKQLQRECASLLK
EMTNITYNLQDELYLTSMKEQLSCMLEEMMGHSAHDGNFRVRSPRKGKRKMTDSHALPTLPPKHPSSNRVGRRADMMKST
FQVNYSLNAKEKAPELEVSVVECDDLQAMVGVETEAVIGVETEAVIGVETEAVIGVETETVIGVETEAVIGVETEAVLDC
DEAQNEWLVINNTKLTQKDREILQEDQWLNDKHMNSAQHLISSEYPLIDGLRDTVILTANQQGPVPASSDCVQIHNINDH
WVVSTSIGGNITVYDSLQPSMKPELRSQLADLYRQFAIGEDSIIPVNVICAQRQQGGNDCGLYAVANAVALVEEIPPTQI
VFQQGQMRHHFEECLENKAIKMFPHDTKVGQANTVSVSYQLTTYCCHEHRPGSPMIMCDKCAQWYHYSCVNLRDNEVYAL
VTQQEDYVCPTCHSD
>Rehavkus-2_HR#DNA/MuLE-NOF 1198-4488 via tfasty with Rehavkus-2_CS, 3 stopcodons [Helobdella robusta]
MVLLDTALSTEKNNRVWEECCLRLAIARTKKNCTHLYHCCRYKLCSKKIEYVNVEDKVGKTLMNNVVQTTTIDNVLTSNL
IQNEDDIILKCSADLIYEQVELSTVSITPTITVGEEIVPSHSQVTALVEDNMVFEMNVDRHESLNVYDVEPAALDNDTCS
DSDSASFTDQELDANNIWTKNLQKTEFSFRLEVGEWQLLRQSQQNHLFKNLDWINIMTRNLKKFNPYCCLCFLWHRVKKV
DSIRREGYLFNAQGYCKFTGCPITFKIIISDEDLLDAHVKFSGITCIHRLSEIMARPVRASKRGEIASSMKNIIPRQKHL
DCIKELCPEVRAAGNRDDAPSVAVLSQIVCQYNKTKRKHPNEMESLRLLKEDFEKQHQSYACLQYIFTEPPSVMLWSKES
LKILRQRCIDDVVYIDATGSIVKKRKHPFYIYEMVVRSSMKGGSPFPVATYLTNLHSTASILSFLNFLYSDYCKLFGKSS
RVSPRYFICDGSIVLLQALARTFCYELLESVMERYYRIVVGHGNTKDFQTPIIHRCLSHIMKNAKVLCLKNIPKNFTFAM
HLIGRVANVTMINELNSILISMEGVFGSEFEGPQVTQYLLQLQQAINDNEFGLEENGATATTELAETEDVSLQLYxFVKF
MSLYFSNIxFIxLFLKDVCQPGSFMKACENNMALAKITDTGIKRNMYYSPEFLSSFKKDLLPSALLWTNLLTGNLGRHGT
SDNYKNQNAIYLELTLKDTQNITKDYTTQGIMEKSQWDLKHIRMTRQLNRIDDFVITYQEIHLAMITEFADNQKRLFKKR
KIDLEVWKKRKQRKKEIYVSNPKKPLILIKDKIQENQSLVTKPVTHIQQQPIILNSFWSDLQGTSWLSSDHINLAMFILS
LQYPHIDGLSDTDFLTHIGLNSNLPTPHGKFIQILNKGGNHWITVSNFFSEQNIIDIYDSRPTKMLPEDERVICSIMKNF
ILPEQKNVIMHLHKVQEQIGSNDCGALAIAFASSLACGLNPTCCSYKQENLRAELAKVFTSKFFHPLEEKITNRKSKPKN
IEINLYCTCRLNHIPHKTDVKENMITCDRCGEWFHRGCHQIPQSAFDLKSYICEKCN
>Novosib-3_CR#DNA/Novosib [Chlamydomonas reinhardtii]
MTELKVSYSDGTLCNYCLVCAKVARARGKGIRTVNLENYAPCGVNAAVLAVRRQQGSRAPEPCVHSTCYHNTLQPRQKEL
QAQAQAQPRTRAAVKLQPAPPAIRAPRAAVGKKEKLEELQREARAVTGLLSPYQGRAGGPVRMDTSAPPSPEQLGTTAAA
AGVQSPGGPVRMDTSAPPSPASGPAAGGPAAGGPAAGGPAAGGPAAGGPAAGGPAGYTGVTRDQSVHGYKARSGRQFGST
GNALYLGLYATCHDAALAVNHFHEMLAERVGNRADVPPPPNAVPAGASLSAAEVAVVRNAVDKAVLAFWDKGVSAGKEQL
EALRSSVADFLRARSLVSELDAAVGAIASGDVKPDDMVVQYTMAAIPNAAKLREGGATASGVRWPGVVKTVTAAASAQRS
GEGCLNVLRGEVKDPGLPFPSTSTIRRSMGEEEVDPQAVGVLRRGIQNFVARCREAGRLGAEATMAADGVDIPGMLEKEM
LPSGTVRFDGDACHGDAISVAMLATKEREYNSLVQRLDAAVAASGGDSHPAADAAAAFASVQFVATWIQHEVLPLAHARL
KTAQDAAAAQSARFQARNGVGEQRLKSQQVSHKCASLQRIGRLQAVVAQAEGLLSGAQLVRDVNLVTLDMCAPSPADGSV
TVSLSTAGSNAEAHCAALVGMLARNMRAAVSSLYDVTRMAATSLLVAMLTSPDSRVSEMVARMHISSKASAQLMRWLVSS
VKQELEAQGGKLLLVVADGEHFSLTNAAASGELSSNLAQLNRESQRLCAAAEQARHASAKRHGWQRRDLAWQDYAQHVPL
LPAQRVLPRGASMSALTRISIASTPRAAPLLEAAAALEQHQSLVAATVAAAATAAAATAAATAAAATAAATAAATAAAAT
AAATAAAATAAAATAAAAVAKAAGPPPPLAQQQTQSRPKRTAAAPARLADYATEGMKPAVAAKHAKTAEVSVACIPDTTV
ASAAVAAAAPVSVVAVPAVGTTECDQQYDHYCLVCGDKDFTERNKILLCDGPRCRCESQYAGWHQHCLKPALSKVPSGDW
LCPQCVEADHRVIEEQAAAPLPPVALQPAVDVAGGLAAVAASAAAATMPPAAAPYVRHVASLRPGVQPLALDLFSPAARL
SGSIEQSRNAPALVIQLQSHYEKMKEIEAHIPWRQLQRPVQQLSHEITSHRESAQCPVSMQRVPQGIITAFAAYMAAPLT
PTLTVQTPLAGSSGSFRAKGLSRHCPGGVDAAAARKDVHAANAAARAAPSNALHEALKAEAAAARQLVLKLPIEEGTAVV
SRLIWRSQYLARQAVLPGDRGQVNPAGTSFPLASAAAESEAYWVFRLTHGMPPAGLGQARQEVIVRHAIDQARLDRMLLT
CKMAGRDFGRQFQFTLPGLPSIVIDEPHKLKTAKPQTNDCCFLGKLDGLAAMQRAAAQCRSGWASDGDDSSTSAAVAGGA
AAAAVHGHAAGAAGVAAAQGQAGAAPGAVAHGQATKAAGVAACGQAEAAASAAACKWGEAFLDKGVLLAVANELASEYQA
TCPAERVERYGNLDPGALLAIIRGETDSQSVPCAQYWIGCVPLHAALRTYGFVREAVVLRTLIEAFEAFDECGWEPVERA
LRILRRTYMLQRMLGNTLFTARVLHGSAKPSLPTYVNGFTLQNVTSWLVNGDTRLEVLQRLPVEWRAELCERSFSSDCCE
LFFSLLVCLCGGKPSLRVIKGATPRITFMHRLRQQARATRGFSMRKRRTRGAYKEHELMLAATLADAGGAAGRVDGSKWN
SGVKIVNAALKHKREGAINKRVASRVRGKMGWLRNTVHHMLKLVTGQPVPKA
>Novosib-2_CR#DNA/Novosib [Chlamydomonas reinhardtii]
MLSAYRFDKKRNRRLNIYCARCAKSITATQPGNRTRKCADFLCIPDAFDQRVIDVIKEQNNGDVVTVQLHSKCEKELAAK
LDVLRGAKESARTRAQAVALADVPEPQRRTVPGAVAKVERLVEEAEAVGATGSLKCRPPRPVLGDITNIGAASPPLQPRT
PDADMQQEPAGAGRQLYGVSQWRQYFKARVTVAGTDYHLLTSANLCVAGLAVNVFRARLLQLDPKCGLSSVRENHVPGST
TLSSSERLKVEMQVSSAMASRASRIAAVSAAQQHQHQQAPGAAHLQAALAKLGAVLSFLKMSLASDGAGGSNSSSSSTEA
EAAALVAVVPVAEGIQVVWHYMQCAQGSASPSLVNAAQLERAYWAFRLTHGQKPSRLRPAQTLAAMYSAVAQEQLHARSA
ALKRKGRDFSLAHTYYPAGKAAKVIDEPHKLKTAAKEQEQGSIYPEGAPLAAMQDIASLRPCGFTGGPRQGPARGGNPGP
RPPARGGQLSMDSQVLVAVLQHLVQEWQDTAAADQMEKFMGEDPKVLLAIAQGRTDTQSVACAQALLGSRLLAVCMETLI
GAFRAWDEAQLDPLERALRNEQRYYLINRFLGNAWSVVGGSCSHVCGLSLANAASFLNNTDARLHVLAHMLPHEREHLNE
RATSTDANEGHFACMTGPGGQKPLVAVLQGRESRVSFLAAKRQQPEEVRGWSYRRPRSRGGYAMRATTHVRVGNGRRQSK
WNNGAKLADPGLSVKREGAIQKRAARKAEGKRVSVRVAVHNKAKLMNQGSG
>MuDR-4_HM_p1#DNA/MuLE-MuDR 5567-6148 (fragmentlet) via genewise with 115764896_Spu, 1 intron (5823:5925) MuDR-4_HM contains a NOF-like transposase gene at 6829-8592. [Hydra magnipapillata]
KYGNEMLFLDATYKTTRYSLPLFFLVVKTNVDYQIVATFVSESETFESISEALVILKSWNEDLQPLYCMTDYCNAEIRAL
ETIFIGCKVFICDFHREQSWDRWLKKLSSGCSNRKDDILCILRRLAWSKSIDEEENAQRILEQSEFWSQESFTKFKQYIE
>Vandal1_tp#DNA/MuLE-MuDR 813-3745, 1 frameshift [Arabidopsis]
MELXVLIMVGEWIYKEEGWKFEAEKGSFGRCVRIXDTTTYTDLASTICDVFSXKFSEWNPIISYWMPGKMSDMIASNRPP
VYIENQISLDTFMLIRXGDPSVNLFVSFYPIGXGGHTETEVTNVDAAHNFYEDINVDEEDDIDEGDEDEYEDEDNEEDED
MDVHDDDTDGESRGSTLDPTXDGSEGSGEDYDYNKWGDMIVEZYGNGHVEEXVVNDTQQTVEPPGEFTRLLASCTSTGTH
VPHVEPTGVLVDCTPTSAPSPTCQHGLYQCTYTRVCAEETRCEGELVEHTDDIAENVTGDDGIVVLEGVSASGLNIESDD
RLVTTGEAYEVYKGFSTLHNAENELLDTDAAPVFDDLANVRVDETEVELSTSGHPLYVGSVFKNKQVIQQTMRLVAIKKC
FRYKQTRSCPKRLEMVCVDRNCSWHLTAHVIPNSKCFKITGYDSIHVCKIETRKDYRKHATYKLLGEVMKNRYSSXQGGP
RAVDLPQLVLNDLNVRISYSTAWRAREVAVNSIRGDDMASYRFLPTYLYLLQLANPGTICHLHSTPEXXGRQRFKYVFVS
LSASIKGWKYMRKVVVVDGTQLVGRYKGCLLIACAQDXNFQIFPLAFGVVDGETDASWIWFFEKLSEIVPDTDDLMIVSD
RHSSIYKGVSVVYPKAHHGACIVHLERNISVSYARYGVSGLFFSAAKAYRVRDFEKYFEELRGRSPGCAKYLEDVGFEHW
TRAYCKGERYNIMTSNNSEAMNNVLRKAKAYPIVYMLEFIREVIMRWFAARRKKVSKCNSLVTPEVDERFLQDLPASGKF
XVMMSGPWSYQVTSKTGEHFHVVLDECTCTCLRYTXLRIPCEHALAAAIHFGINPKAVVGLWYSLQVFSDSFQEPVLPIP
DPKDVVIPQXLSDLILIPPRSRRPPGRPPTKRIPSTXENRVXFSPILTSMXFFLPFRRLTIFxHFRKRGRKDSFLISVQD
VGKRVITRRHAKTLFXR
>Vandal3_tp#DNA/MuLE-MuDR 3 exons gi|4850412|gb|AAD31079.1| Mutator-like transposase [Arabidopsis]
MAGPATVIVVSGSWVKKQRFVFNPDERGCRVVQLEAEKAVYDSLLKMVVDDYGVNQSTHQLRLSYMFSNKTLKNMPFDTP
PVYISNDRQLQCYLGLTKFEQLRLCVEFTAKDSSDISRKDGSRGRGSKRPIESDSRAESRFEVPGWGFEGVCYDYQEDEA
GDDEAGDDESGVDEASDKEASDEEEDDEFSSRFDFFDDSDGASSDDEDFAVYGEPKNNDEDSPKPSPSKRTQTMEMIGSA
GSLTDLKLELSTLTLAVGQQYRSKFELEYRLKLLAIRDGFDFDVPTSNKTTVSYECWVDRCLWRVRACRQGNDPNFYVYI
YDSEHTCSVRERSGRSRQATPDVLGVLYRDYLGDVGPDVKPKSIGIIITKHFRVKMSYSKSYKTLRFARELTLGTPDSSF
EELPSYLYMIRRANPGTVARLQIDESGRFNYMFIVFGASIAGFHYMRRVVVVDGTFLHGSYKGTLLTALAQDGNFQIFPL
AFGVVDTENDDSWRWLFTQLKVVIPDATDLAIISDRHKSIGKAIGEVYPLAARGICTYHLYKNILVKFKRKDLFPLVKKA
ARCYRLNDFTNAFNEIEELDPLLHAYLQRAGVEMWARAHFPGDRYNLMTTNIAESMNRALSQAKNLPIVRMLEAIRQMMT
RWFAERRDDASKQHTQLTPGVEKLLQTRVTSSRLLDVQTIDASRVQVAYEASLHVVNVDEKQCTCRLFNKEKLPCIHAIA
AAEHMGVSRISLCSPYYKSSHLVNVYACAIMPSDTEVPVPQIVIDQPCLPPIVANQPGRPKKLRMKSALEVAVETKRPRK
EHACSRCKETGHNVKTCRA
>Vandal20_tp#DNA/MuLE-MuDR 708-3483 via tfasty with Vandal2_tp, 2 frameshifts. [Arabidopsis]
VDDIVVVQAGRWILYSTGEWEFKLDSCRHGRAMSLMGLRTLRDLELKVRHIFGLEKPSISLELSYIFEDRLALLAGVLPG
PTMIGSDWQFRCFKSLSIGDKSVNLFVCFREGDSVIVGPACEPRQTSASVVKYFEAGEPTFAGIVQFRDKPVPAVGGGYF
AGLLSSVQDNMDAHPPNNHSDFVQSTTVCDLSSQWDISDELLLEALEAVEKSGAFVTAAGVDTSLPAEVPDSGDDSESLA
ESDESSSLSTGSDLEVSEFDDDTLHENTLQSDKEIVVHEDIGDDDFIEQPPKKKVLLQNTNPGAMTEFLETCQKGISIDQ
VYGYEDLEPMFGDDDIDAKAAYVDLTKEDDNMFVGRTFASREDFRIALSIYAINRIFRFKFTRYEKHYLVAECYDKKNCD
WRVRAHQVGGDSEEYEVRLAKLEHVCKVQTRSRFSKHATSKVVAALLRAKYAKAFCGPRARDLPDSLLREHNVRMTYWKC
WKAKELAVETAQGTDESSFSLLPVYLHVLQLANPGTVYHLETELDDIGDDRFKYVFLSLGASVKRLKYIRRVVVVDGTHL
FGKYLGCLLTASCQDANFQIFPIAFAVVDSETDHSWTWFMNKLSEIIKDGPDLTFVSDRNQSIFKSVGLVFPQAHHGACL
VHIRRNVKGRYGKKSGLSALVWQAGNAFRLKDFNNVRDRIKEKRNMSCWNYIEGSGVANWSRVHFTGERYNLMSSNIAES
LNNALLPARGSPVVALLEFIRKMLARWFESRRKKISRTVGDIPIAVERELMKRFKGALGMSVSAVGSWDFEVVAKDGEQF
HVSLEQQSCSCLEFQAIRIPCTHAMAACHDRGLEFRTLVGEMHRLPMWSPTVQAPILLVRDPSEVKVPEEIRSLCLMPPK
TKRPAGRPPKLRIHSVGEYEVSYIFFINIFLYNPKATILFLLHVGK
>Vandal7_tp#DNA/MuLE-MuDR 615-3050 [Arabidopsis]
MKKRIQTNLHFDYGGYYTADHEWSCKNSIYGIVFKTSSLERITYADLIDKICRKIALGGEKRNLKLSYKISKAWRESYIV
DNEDVLIYLTSLDKEGFRPVLHVELCSDLESNNSQVPIVERRSSCGVNFGELAANVVMVADANTGILSTNEPIIELEEQR
ETVSEPMMLENGVSETVIEPLMIECGVNEDSDNDYVREEYVHLARPVQESVAAVVKEWEDGIGDLVGQEFRSKEAVWDLI
NRASKEEVFGVKTIKSDPGRLMLECSQASLGCDWYLRVTKTSSTDFWCVKKHTQIHKCSRCPEATRYEKQKGTPRLVADV
LHEDYPGLLNTLKPKQIMSIVKGRLGLDCSYSTALRGKKKHVSDVRGSPETSYKLLFAYLHILRSVNHGTITEVELDADD
RFKFLFIALGASIEGFKAMRKVIVIDATFLKTIYGGMLVIATAQDPNHHHYPIAFGVIDSENHASWNWFFRKLNSIIPDD
PELVFISDRHGSIIKGVADVFPKASHGHCVWHLSQNIKKMLAGDKEAGMAKFRELAHIYTATEFNIRYAEFRRKHPNVAT
YLDRAIGIEKWARCYFQGDKYNIDTSNSAESMNAVFSEVRKYHLLPMIDAILEKFSEWFNTHRKDSASASNTRQVVPVVE
NILHTRCPIGAKLNATELNSFRQEYNVIGNDGFSYLVDLERNTCSCREFDIDKYPCVHAIAAAIKRSKMDWNSRSILNVS
IYGLCSKYYLIETWALAYYRTIYVVPHQAHWFFPPDYVEKVAKPPDYTPKKGRNQETRFPSTGEKRRKKTNNKATRGINL
ERWLQPETNDD
>Harbinger-3_AMi_tp#DNA/PIF-Harbinger 343..2004[Crocodylidae]
MAAPAPAPGSDDQRPGLLLAAALALLARRADRRLAHGRLGPPGSPTRSDRLPGRSAPSQGRRRAPAAWTPSGWPDPGRDA
DDGLLDATAGAALALLGLQPRRLWARRASQDWWLHVVQHTWDDEQWLEAFRMTRATFRDLLEQLRPHLERQDTXMRPPLP
ADTRLALALLKLATPASLRYVGHLFGVGKATAGEAVLEVCGALQDVLGHTVLRVHDPLAVVAGFRALGFPQCIGALDGTH
IPVTCPPHGDRPYYSRRGFHSVVLQAVVDHRGAFTHVSAGWAGSAHDARVFRNSGLPGLVESGRFAPGVPDLQLGAVVVP
PLLIGDPAYPLLPWLMRPYTGHLDPRQAHFNRCLGRTRALVECAFGRLKGRWRTLTARLEFAEDNLPRVIVAACVLHNIC
EARGELFREAWAEEARRAEDAWQREHHLQRQRRRPPRRGPRRAAHPPAGARAPGAGGAGRPPPPALPAVARLHRRPRTPP
PPLPTPSTTLTADTSQKNKFLFPSHQTEPPSPQQTEPLHHPPHPPTIKHPLPRXNYLQCXLCAVPGWGPWGGGA
>Mariner-1_DPu#DNA/TcMar-Fot1 859-2228 via tfasty with Mariner-36_HM_tp, 1 frameshift. [Daphnia pulex]
MVRNYHRKTEKVPREILLSALRQLKIHHDLKWGQSSYRRVADSHGISKTTLFNHFQKVKHLASIPDNYFSNQAHHRQILK
YEEEEELVGYLKLAMESNHSLTPTEVRKLVYSYVLGNGIICPAMWHEYHTAGEDWFTSFMKRNQCLSLRKAEATSQARAA
GFNYPVVHCYQEKLGGVFARHQYPPDRIINIDESSNQSVMAPETVVAIRGTKQVNIVICFIFESIAAIYFFNLLRFGQTT
GAERGTNVSMICFGNAAGGFIPPAYVFPLKNVNRKSMNNSVPGSIAFANGTGWFDGNIMVDVIEHVQKYVQSSKENPLLI
IWDNFSAHLDYLVVKKANDYGMELLTLPPHTSHELQPLDVSVFVAMKKFIKAAHMEWYRNNPGKRITIHEIAGLSKDPFY
KAMTPANLISGFKRAGIYPFTLLQPDDPRFSSSLVTDLPGTKQSSYSCFSYYSCYLF
>Mariner3_AO_tp#DNA/TcMar-Fot1  121-1800  [Aspergillus oryzae]
MPDSYSDIEIRIVQACTIAQGQKKPNISALARQFNVPYQRLRARIHGRANLSSRPISTKTLDDSQEKALIRWIRQLDNLY
SPPTAGMIEQSANQILQRNITDGQSRTVDKNWVYRFIKRLPEEFKLIQQKPKDKKRLDAEDIGVLQHWYDCLEAFIKNIP
PKNIYNFDETGFQLRQGKTQKVVTTMPLRAARGNPSKEVGELISAIECIAADGFTLPPYFIFKGTYHLERWYDADIPEEY
RISLSPKGYTTDKISFDWIQHFHRHTKHRISTKKEVRLLFFDGHESHLTYEFLQFCGLHYIIPYCFPPHTTHLVQPLDGQ
PFQVYKHFYRKRNNELAQRGAEMDDKSDFLKEIHSIRTMTFKQRTIRDAFEKRGLYPLDSEKVMKSLREALETAPELEII
TTPSPPPSSSSPPSTIRGLRRSISKAQSFINNSPELDQSFVRRLDRVFQSSLETTELAAQLKDDLQQHLRYRKPQDRRKS
QKRVKYHGPLTVYDAKRRIADRTEVERLQGLRQIRKTGALEYDKPPQPTNTGDLPSTEAGQVDREGPRLPYWIDTQGDVV
>Mariner-2_TMe#DNA/TcMar-Fot1 380-2134 [Tuber melanosporum]
MPPHPAFILPSQRVEPYADIEIRIQAAVAFLRTSNNQYPNFAEVARQYEIPVRRLRARFQGRQSRQERPGTNHKLTEDQE
LAVCQYLDRLDKVGTSARLQMVSSCANAILKNAHTGTGPAPLVSAQWAPRFLDRHPQYFIRKQQTIDADRKNAHQPDNIR
AWFQKYLDVCQAHEIQPQDQYNFDETGFRIGVGRDQWIITRDPTRQAYLGSSTNRELVTVCETISGDGAVLPPMIIVPGV
IHQEPWYTTTSIPDDYLIGTSETGYSNDNLTMKWVVHFQQFSSKRQVGTYRLLLLDGFGSHCTKPFLDYCDSHKIIVFCL
PPHSSHLLQPLDVVVFQPYKHYHSEAVEAATRMGCGDFDKCEFLDRIDSIRQQTFKPTTVRSAFRATGLIPYNPDLVVSK
LREAAPVSNEPTTTAGESSTAGGIPLTLLQLIGQGKELLEEPEVKDISLDIQQRLKNVLQGGLVLAQSGALAMEHLENTR
AAEEARYTRNRARNRRQIQTGGVIYPSQARQMAKSREAADVEKAEKQLRKAQNAQKRVEKAQRKPFLDEIKARGKARHAA
QAHKKKISRLIVMGIKQQARLQKLM
>Mariner-8_HM#DNA/TcMar-Fot1 499-2405 via tfasty with POT_Cis_tp, 1 frameshift and 2 stopcodons  [Hydra magnipapillata]
MPRNPKKKLGSRKYKDYTDETLKIAVEEVKKGSSLRKIAEKFAISRFALTAALKGKVNKCGRPPVLNSEEERRLVESISM
AGEWGFPLTALDIRLIVKGYLDRCGRNEVRFKNNMPGVDFIDSFLKRNSKDLSKRLGQNIKRSRAAISRDIVNNYFNELE
KTLKDVDPSMIVNYDETNMTDNPGRKQVIVRRGSRHPERIVDSSKSSTSVMFSGSASGMLLPPYITYKAAHLYDSWTEWS
SRHCVxxIEEWFTLEIFENWFQRLALPFKKFDSDAKKVLIGDNLSSHISAHIEECNKNNIKFVLLPPNSTHFTQPLDVAF
FRPLKIKWRQTLTEWKEANRGSIPKDRFPRLLKKCLDALGEENISKNLKSGFKAAGIVPLDRNEILKRLPDGDATAVSEE
LNSSNNWTDSIKAFFEESRKRETEPLKQRKKRKLNVPAGKGIEGIEDTILINDDDPQPNRSNTPNTKTKENHSKLKTLKH
NKKLANSDSFDDSDDQYSLRDSNSDMDPETFSDLESEIPVDLQLEETTYDEPPKIGVSKGELKPDIYVIVELIFDKNTKK
ETTKQFYGVILRTCFEKNEVTVKFFRRSSKSKGNDYIFPNVDDEMDIQLTDVISIVKPSKVNRGRYTFPYELPVKH
>Mariner-4_AF_tp#DNA/TcMar-Fot1 124-1829 via tfasty with Mariner3_AO_tp, 1 frameshift. [Aspergillus fumigatus]
MPKSSKINESYLLEACEAAQAQKKPNISKIAREYGVPYATLRDRVKKHVHPRLANKPVNRALKGYQEEALIQWIVCMRDR
NMPVTPKLLEEYANQALRRAGESRQVSKMWAYRFEKRLPEHLNLGPAKQKIKESKRIQAEDAGLLTHWYNQLAGVVKKDT
PARLVYNFDECGFQPGEGKSRKVISSKGSKVPDLAESERGENITAIECVAADGWQMDPWFIFKGKFHNDSSLPLNTNLCS
LPKGNGIFMESWFNESEALPPDTTIATSPNGWISDELAVQWLQSFINATNERTKKGEKRILIFDGHGSHLTVEFLQLCED
NGVIPFGFLPHTTHLCQPLDGKPFLSYKQHFRRMNNELSYWAGEPVGKSEFLHMIGPVREKAFNQRIIREAFKDRGIWPV
NSKIADDLAILLWEGIPDIYAPDLDKMTPSTPPSQPPSRPPSSSSIDISPPRTIQALKKNQAKLSKHADLLTPKLQRNLE
RIFEHNRIAAEHLAIANETIGRIRAAQAPLRRQYTKRQVKPLSQSGILTLRDANRSIASRKAKDAAAQERRLQTQWEKVH
GKPPPLAST
>TBE2_OF_tp#DNA/TcMar gi|1815756|gb|AAB42017.1| 42 kDa transposase [Oxytricha fallax]
MRDKNYKLLGSIYDEEYIDLVFKLRYGCDVYSDQVKPVLNYKSIALLLKRSPSTVRSHCLIAVQLKQQQLNSKPKRKSKF
LQKHIDYLINEKTLKYWAHFSLDQRATMFHRQFPELKISAQSVANIYKRNGITYKGVNRIKRVIDFTQPFYRNNLNYIYD
QMQRAQQNNIKFIHADEAVFTFNTFIQKSWYKRNSNIEVYDQKVKVQTMAILGGISEDAGLETYVIHPRSIKTEQYIKFL
EQLREKYPEQEIILFVDNLSVHKTKETRKSYEQLSITPVFNVPYSPQFNGIEFYWGILKGHYKKLLLYHLMHDLPIDTVD
FIKSSAKRVDNQLAQKCAKEGRVNVYKQVLELSQ
>Sola2-6_HM#DNA/Sola 1161-3479 [Hydra magnipapillata]
MFLGGCKEINMQLAGKLKNIGINAIPGEKICPSCMIKLISFKDDEQREPTCSQIYEDEDNELNINELLKKNLNSSLTTMN
ISPLKMHAVNSHSRVALGKKKLLHIQKTVKLGIARTLNIDPEQLSKEDSFNKLSKEVKGKANDMDILIRKIKEKMLISNR
NQKIQLLTLVPISWSHKDIEKEFNVTNYMVQISRKLLQKNGILSFPEKKKGKEIPQETVDKIIEFYCNDENSRLMSGKKD
FVSIARRSHMQKRLILSNLKELYAKFKTCYPDIKSCFSNFCSHRPKWCITVGASGTHTVCVCTYHQNVKLMISAVKLSKD
YHELIDMLVCSRANKTCMIHRCPLCPEDSTLVHYLENELYSQDDIDEDDDYCIDYKQWKTTDRSELLSLTETTSSFINTL
KNKLQKLTVHSYIAKSQAASLRKLKNELSSTEVIVLCDFSENYEFVVQDEIQSFHWNKIQATLHPTVIYYKENNVLKCDS
ICFISDDLLHDVDMVYHVMKLTIEHIKSNISHQIESVHYFSDGCAGQYKNCKHFVNICHHEQDFAMKCTWSFFATSHGKS
PCDGIGGTVKRLTSIASLHRTTTNHILTASAMFNFCQNEIIGINFYYISKESNTIIRSEMEKRYTTAKTLPGTRSYHNFV
PISNTKIGTKIVSEQLEYSFVFNFQTDEIIKEFLSNISIGVFVCLIYDNNPWIGLVEEIDVENKDFQVSFMHPCYPSRSY
CWPSRDDVCWVPSTNLLLMINIPTTVTGRQYKISEIDHQSIEDSWANFKPEN
>46130760_GZ#DNA/TcMar-Ant1 gi|46130760|ref|XP_389138.1| hypothetical protein FG08962.1 [Gibberella zeae PH-1]
MAPNIAESQHLLIRDMILSKSQDGVSPKDDKIAATTGCSTRTVRTIRSNLRRFGTTRAPPNKTGRPKTITPNMFTALSDR
LANRPWMRLTDMAAFLRKEFDVDVSRFSLSRALRSAEWRKKVTRNVEKERNADLREEHVYERSEYRSYQLVFIDESGCDR
SIGTKHKGWAPRGVTPIQVKRFHRGRRFQILPAYSQDGVIHFRVFEGSTDSEIFENFVEELLPYCGRWPEPRSVLIMDNA
TFHHSEKIQRLCDEAGVVLKFLPPYSPDLNPIEEYFGELKTYIKQVWDEYEDVIRHNFGLFLEECVRTVGERQMSARGHF
RRAGISIEEQPS
>Mariner-6_PGr_tp#DNA/TcMar-Ant1 238-1361 via tfasty and fgenesh, 7 introns (702:768, 975:1034, 1321:1610, 1916:1985, 2283-2409, 2569:2855) [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MVYRFHAPATKIAVVRMAKQGLSAALIKNMLGVRFSQQSFHRWNQLYEETRCIIRDPDTYEARGRPASLTQDESTFMIQL
VRSEPGLFLDEIRERLYDASGVLLSISGVHRTLVERLSITLKKPDTKNIRKSLTAKYAYVERMEFFPADFLVFTDESSFT
DKDLLRSFARSKKGTPSERFLTNQNAERLSLLPAISLDGMLALTTTLATFVGRKFEHFLEFDLLPRMNRYPDSNSVLVCD
NATTHRGDRVRELCNAAGVQLLYLPPYCPELNPIELCFAAIKQNLRATQILNRTNDLEWEIRRVAAEIMTAEFCFKLYPT
PSPLVYVYDRAGMPYTLLVIGTGCDAPTTAEKGHRKSRKSVPVDRECLEPLKPPNLGKSHLVLKVIDWRPSERLIDGDFI
KKQSSSKRIQYKREILSLGIISPSPSSSSLERSRSQQSVSRNRTISPSARKSLEAVRYGSYSISGLPQISPSPSQSRSQD
VIEIISLADQVSSDTSATQPDGLDAAEFVIAVEKCISGRKAIWVDENLGNGNFTAPLIKAVYGFVYGLLMNPVCAMIVMV
SEDSVRAHREERQQARFKNPEKEAMKTTAAEQVAAVDPSEGGRNEGEEHEDGAKP
>Mariner-4_MLP#DNA/TcMar-Ant1 237-1451 via genewise with 2072514_Nostoc, 3 introns (703:765, 976:1058, 1137:1221) [Melampsora larici-populina]
MGGFRKYSPDVKVLAVTWSLKGLPRTLIRQRLRKSIXRQSLTRWTELYRLTRAVIRDPHTHQPRGRRQHLNNTDREFMEV
LVNEQPxLFLDEIQEKLYNAHGKMPSISTVHLELQSRLMISLKKACVSNVRKSVRPKLLWERDMMGYPSNFLVFTDESAI
CGRDLLRTHQRSRIGIRTTRKIPKMHQGRYSLLPAISFNGLIALSVLEGPVNRKRFERFLKYTLVTPNSVLVLDNASIHC
GGSIADLCKEKGILLRYLPPYCPELNPIEFGFNVLKFDVRRSQVLVTRSNPVERIRKAAHKTFTAELTHKLYYHCGYRMF
EEDLDHVE
>Mariner-9_HM#DNA/TcMar-Fot1 558-2629 via tfasty with POT_Cis_tp, 1 frameshift and 1 stopcodons  [Hydra magnipapillata]
MVRNYVKSKQKLSKTYTDYELKKAVELVNDGEPCKRVARLLNIPHRTLRCHVSGLRKTSVVGRRSALLPEEEVTIAQYIA
TFSDFGYAFEIVDLKLFIQSFLQKSDRDCPYFKENLPGNDWVRSFLKRHKKLLSYRACQNICRKRAAVSCDSVNRFFSNL
EETIKNILPQNIINYDETNLSDDPKSKQMIFRKGTKHAERVMNTSKSSVSIMFACSADGVFLPPYTVYKAERLMDTWILG
GPMGARYNRTKSGWFDSHCFIDWMQTLVIPYFRHVDNDAPKILIGDNLACHLSIEVIEICEANNIMMVFLPPNSTHLLQP
LDLAVYGPMKSTWRKVLTAWKIGEGRFHTSLPKNVFPRLLLNLISNMDHIQEFAVNGFKTSGIYPLNRKKIIDKILRADI
STSSQNLVSPLVLERLKELREASAKKPGAVLRGKKVKVSPGKSVSLDDVAVSSVLKSQSKRKLIKIKNILLNDSLDKITS
SVDLDSFKDIIDYDMPSSSKMYIELQEDSAKKSEGIQKVKSKTLKKKDLFAKKSNLYNGVSGLYGSIFHQKQTHIQKKLE
DCLNEDCLKKSFESDPNSExRNIVHDSGMVVTSKYPLVEGSYVIVRFEGKKIPYHFVGQVVNSEEDNNWNIKYFRRDFDA
SNPRIISFKEPQVPDYLLTESKSIVKQLPCPQYEKNNISFLKEIIGDLYMR
>3378363_Novosphingobium#DNA/TcMar-ISRm11 gi|3378363|gb|AAD03946.1| transposase, fusion orf777 and orf780 [Novosphingobium aromaticivorans]
MGHGLSMDLRVRLLAAVDGGLSCRAAAARFGVAPSTAIRWHAQRRATGDFAPRPQGGDMRSRRVEERSADILALWEARKD
ISLEELRIALAEVGLTVSVAGLHRFFVRRGMTRKKTGHAVEQDRPDVLKQRHHWFDGQIDLEPERLVFIDETWTATNMTR
SHGRCAKGERLRMGYPHGHRKTTTLVAGLRMTGMVAPMVLDGPINGDWFEAYVAQVLVPELRPGDVVIMDNLSSHKRPAV
RDRIEAAGATLRFLPPYSPDFNPIEKAFSRLKAMLRKAGERTVSGLWDLIGKLVDIFRPAECANYFSSCGYDPD
>49658890_YP#DNA/TcMar-IS630 gi|49658890|emb|CAF28516.1| DNA binding protein [Yersinia pseudotuberculosis]
MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLILLMQQPPQHFGWLRSRWSTT
LLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFKDPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGA
DWCMKGQQKRIATPGQNQKHYLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED
WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPFPGSQAVAVL
>ISRm10_tp#DNA/TcMar-ISRm11 gi|5002202|gb|AAD37358.1|AF143444_1 transposase homolog [Sinorhizobium meliloti]
MSKALSMDLRVRVLAAVGQGLSHRAAAERFGVSAASISRWRSREREQGDARPKALGGDRRSGRIDAHMSVIVEALGPEKD
ATLEEVRRSLADRGLFFGFGTIQRFFKRHNITRKKKSAHASEQNRPDILKRRQDWFDGQLDLDPERLVFIDETWASTNMA
RRYGRCRIGERLRIRVPHGHWKTTTFIGALTVRGFIAPFVIDRPINRLSFETYVEKVLLPELRPDDVVVMDNLSSHKGPR
VREMIESVGAKLEYLPPYSPDFNPIENAFSKLKALLRKAAERSIESLWTTIGRLLQLFTPDECRNYFAAAGYDAA
>Mariner-5_ADi_tp#DNA/TcMar-ISRm11 242-1315  [Acropora digitifera]
MEALKVNKFGRTYRTGIALDQDMRSLIIDRILQEGGDRVTGYIPRSFRYFSEELKLSVNTITKIWRKFCEELSINPRAKG
GTNWSKLTGDDLELIEILKIEKPSVSLAEIISCLEEMDGEEVSMATVSRALKHRLPSGPYTRKKITKIALERFTQTNIFY
TQLFINYLATKNPRRLKFFDEAGVKLPDVGTRLYGHSSAGTRCVEVMKKAESPNTTLNMLVSLDGPEYYNLTDGATNTLQ
FLQFFEEAGNCVNLQTGRPCLQVGDIIVMANLSAHHYEGGEILEVWLEEMGIELIYLPTYSPDLNPIEFCFNKVKTLLNG
EFQELTHTNTKLAVMEAVERITTEDMAGFYEGTSYLFV
>Mariner-1_ADi_tp#DNA/TcMar-ISRm11 940-1998  [Acropora digitifera]
MPRRNRILLERRERIVRAFEDTNEDYLMVADTIGVNRSTARSIVARYIREGRIAERPRGGANNVRVDNEMKDCLNDILND
NCMLTLAQINQELRRRLPRKPRIHDRTVARTLDGMLFRFKIARRQPAERNRPDVIQKRHDYANWFMGQAIVSHTVFVDEC
GYNIWTARSQGRAIRGERAYRQVCGQRGRNLTVALAISATAGLVFHSAIIGGMNAQKFADFLTQTRLHLDPDEQVVFIYD
GAPAHHNPGNPGPNTELKKLPPYSPFLNIVEQAISSLKAAIKADISRPEIQREMNNRDEARRQGIPLGHYRTQLLMEALQ
RNIGTITVAKCTQWFRFMQTYLPRCINKEVIEG
>Mariner-11_HM#DNA/TcMar-Fot1 488-1440 via tfasty with Mariner-4_SM, 1 frameshift and 1 stopcodon (fragment)  [Hydra magnipapillata]
MVRNYKRKTKRGSYGAEGLQRALDSVKNGMSLRKAENSFGVSRKTLRRHLQGKVRQVGSNKLGNHVNTFSIEIEQDLVKH
IQMMERALLARNETSEPTNTNEEAGNAVDDEASVNVMETDRIATGDSNESDENQLDKTADHPGLSEALQIISELSPIPRI
KNVRSRKRKTEAATVITSSPYKAMLIEANAKKTKQNKQVVVENNNEENDEDEIDVIADKSKRTKSGDDKETGKRKQYART
KSKRTIKSNASNANVIRKGSKERRCVGSVTNSDDTPCCMCGKRFNEPPIDDWQQCPECLNWYHDGCGPDDTAVCFHCQ
>MuDR-2_HM#DNA/MuLE-MuDR 2008-5235 [Hydra magnipapillata] 
MKKNISFSKFKFMANQQERSLFYEQKYSLQHLESFRHQFLFVFQNDHNYALQIIPVDQSYSNTINDKTSTAYLNKNASLK
DQNVIEVNMHNETSDKVFIPLSMTSEKSVTSKNSKATLNITAATPAITKKTETLTFNEVLTLLQNATYFNNGEETIPVRP
KAGEIYGFTISSDKTLKKHLRADGYMWRNKKSCALGNGLITKTYFYARVGKTYTNNFEKHEYMLQNGKKALIHYLGNEKS
YVDRCHGNSTKSKSFFYRSSHYVFDQVLAQGKNKPMDAYRSLLSNDPGGHISTSIIPRNPKQVANIMTRNAEKNNFHNKD
EVWNSHLVAYSIHPFVRKIESYPDICIVMCCEKIVAQMEEMLELLPCKEITLHYDTTFNLGNYYLSCLAYRHVCLETKRN
KYLYSSPTVPFAFFIHEKRLAQNHKYFFQTLKENVCGKNFNKSRKLFISDREFDGSHYFDNTKSLVCWNHLLQNVKEWMR
KNGKFSSSEYDEAVKAMKYILRSNSVFEYESRLKSLTKGNINPWNDQKFQKNYIQYMHSDVISRAAAFVLAEEGIKYPNF
GVTNNASESLNKVIKDLIDNKITKMDSCILAMNYLSAYFHREVEKGYYNVGLYQLSDEFAFMLRSRDELSANQIILPDDI
VKHIKETEIHYKDHNNISSPYASIEMLVEKPVKSDLPKLVYSISSLAKDILNKNGVVFVPQNRSWSVKESETIIHSVNLN
PPAHCTCGASKNCVHILAVQYLSGNVNSLEHFEGKKRNLTSLIQKNRLKVERKSGKKKPRKCDIDSNLKTLNFCELAVPK
NESFSIKQNEQSTVPEIKYPIPRGLQWGVGLVLNSCTIDNTLTMLKLRCHADKYFLNRLGTSEAEIELKKAMRYLNNDDD
NYGKEIWACFLKSKIQITSSPCFNLYGSSKTFFFNHFKEAFTFESVGKCFTCLNSSFHPFDFIELPPNHDPTDYLLGYLK
DKRLLLNCLVCGNKELNHCGTTLKSQNTWMIVIECDIPNISISSLMNLPKKILIEKCYFSLACITLGLNAHFTSLHYIRD
QWFFYDGMQKNGKLTKMIPYNWQNKVANHVIYLID
>MuDR-1_PTc#DNA/MuLE-MuDR 244-3138 [Phaeodactylum tricornutum]
MDGILKDVLDQCIADKKRWNTVSIPFPTQNGEVNLCDYIGFDCRLLGECFVFPDQYNSSSKETRARLAKALKIAAAEGKF
PLVERGWDEKKKQIRFECFRSRSHSERTYQKRQGTSFPGEDAKARSTSSKRPDKGKECPFHFYLYWVQEERHWCLFGGAR
GNCNSHSHHLPMEPHEVKKSIAYINGHEVQIALDAAKSSAPPSVIGKMLQLQTGNILSDSSLQHIRIRSGKEQETVLLKD
EEFMTQADKLLSYLENTPEISFCAIYDDPDSPLFTVYKQRAKKDRRRLHTSIRVNSGVSAETGILDNATLDAMDPNGELD
DYVDRTRCAFKLLGSQKMLLGVAWTNNESRNVFSRFSEIMVADVTEGTNNAKRPLFLFSGKTSNQNTFTALWAFLPQQAC
WAFHWVWTRCIPQLLPKQGIQQMRLTITDGDPKEYGTFVDAIPTFYPLCEHKLCHWHLLYRSNLMKVQTGKCGVKATILF
RVVVLWIESWMTKIETQEEYELSKRLLADWLATPEAIDVKLGGMGQTIVSQINAYMTLSLFPHEQRWARYRYLYTRAFNT
SASSYAEAENSALKRRGDGVRPSFSVPKATQVINEGTQIRSKKRHQKAVYNLNAAKTRKPAYYANIGDLVDYIQDSLSKD
FEAAASFVLFRPNADQFWVKQATRKSKNTDIRKINDSSYYKYMIPQFERTRIVELVNIDGTFYLVCSCGKFQRQASPCAH
LYKVLGQSPTSTDVSVRWTKHWDVYLHRSGHSDLSKHLEDLYKQERPGPVFVDSGQWVIGKGEKGSYFFETSLPYKPPVI
RDFNRWAVSSQTTGADLSGTKNTTNMYFSSGMVQESTSLSREHAFQDSLHENSTNSQNSDCFDDTQAVTTESVSSTKRMF
GSSAFVHNFHFYQEMSKLAGFDMEAAESMNKAMQEALEKVQANVAKRAGKMDYTIGPAITKDRVGLRLKPSYSPKKRRKP
NLQRK
>Tan1_AA_tp#DNA/TcMar-Fot1 gi|1805251|gb|AAC49623.1| transposase [Aspergillus awamori]
MPPKASIPSKSQVEREGRILLAIEAIRKGQITSIREAARVYDVARTTLQARLSGRVFAKNMTNARQKLSNNEEESLVKWI
LSLDKRGASPRPLDIRDMANLIISKRGYSTVEQVGINWAYSFVKRHESLRTRFARRLNYQRAKMEDPEVIKDWFKRVQEV
IQEYGISSDDIYNFDETGFAMGMIATYKVVTSSQRAGRPSLVQPGNREWVTAIECIRSNGEVLPSTLIFKGKTHLKAWYE
GQSIPPTWRFEVSDNGWTTDKIGLRWLQKHFIPLIRGKSVGKYSLLVLDGHGSHLTPEFDQSCAENEVIPICMPAHSSHL
LQPLDVGCFSVLKRTYGGMVQKQMQYGRNHIDKLDFLEVYPKAHQCALSKSNIISGFRATGLVPLDPDQVLSRLHIRLKT
PPTPDSQSSGSVLQTPHNIKHLLKHPKSVERLLRKRQASPTSPTNSTLRQLLKGCELAITNSIILAKENAELRASHEKQL
PKRKRSRKQVIYTEGTTVEEAQRAIQEVEEVQNDEDIEVEPQSQYTETPSRAPPRCSNCFNIGHRRTQCSKPPTN
>POT_Cis_tp#DNA/TcMar-Fot1 530-2395 [Ciona savignyi]
MYSVNNSVNAMRRYRKRKGSRPYKNYSEECLKNALSAVQGGMSVRKAEKEYRVPRRTLSNKLKKLHSKSVGRPTALTEEE
ERAMVHHLLICAEWGMPLSCLDVRMIVKNHIDSKGKVIECFTNNMPGYDWVKGFLHRHKSSLTERLCRNIKRARAQTSHD
DINVYFRHLQSTLQDIPSTHIVNYDETNFSDDPGVKKMIFCRGVKYPERIKNFSKGAVSVMFSATANGEFLPLYVVYKSI
KLWHSWCEGGPPSTRYGRTTSGWFDACTFEDWFTSVIVPWAKKLPGTKVIIGDNLSSHLNSRVIQKCEELHINFAFLPPN
TTHLTQPLDVSVFRPVKTHWRNIVSEYKEQYPSSTSLDKHMFPNLLSKLMKILQKDGNDTNIIKSGFKATGIYPYNPNEV
LKRLPSTDLDDSVSSSISDSVLTYLQQNRIKKRQGAKRKKLEVPPGKSVSVDDLKTCQPSTSGLPITKTKNSTKGNIVRA
DEVSTKAKKKKTGGAQQHAYWSSSDESDCSLHYNDTSDDLESSEEENWPQESRNKCGDFVVIKYIVKSSVIHYVGEIVNF
DATAAFAEIHFMKHLGKELFAWINEYCEVDLNQIVLSLPPPQPNRREQYTFRAELSGITNLR
>ISL2EU-7_HMa_tp#DNA/PIF-ISL2EU 81-1736 [Hydra magnipapillata]
MSKNLINFNSDVQLCENSEIELCENSEIELYENSEDDSEITEGELTFNGEVEPCENSEQNSISLREVELTFNSEVDFTSK
SGGCTCCVPNCFNNSKRNKNLSFYVIPKEKVLRKLWLAKISRKDFTPSSSHRVCSAHFQGNKKTYMNNVPTIIPKTVKLT
AHVPRKTKNSLGLLHKTTQIPYSEELSTPVLSYKEKLKQENKILKDQIEDIIKEKQALVNTQKEAICKLNDKILLSQFTV
ERFKHNKEHFKFYTGFENFELFKVVMKFLEPEIYSLNYWGSMSTIADNLSETSSSKTRGRSRILNVEEEFFMVLIRLRCA
FPIEDLAIRFNISSSTTSRILITWYDFLHIKFRSIPIWPTKKLVNETMPSCFKDVYPNTRVIIDCTEIFTVMPTSYRTQS
AMFSKYKHHHTAKGLIGIAPSGAITFVSDLYAGRSSDKQITNHCGILKLLEKGDSLMADRGFDIVNDLPKGISLNIPPFL
EGDFQLTLEKELETRRIASVRIHVERAIARIKNYKILQNTFPLTMAADMNKIWVIVCYLVTFLPPLIKTDSK
>IS4EU-2_DR_tp#DNA/PIF-ISL2EU 76-502, 1172-2169 [Danio rerio]
MAAQSRSKAFCCVPKCSNSKQKQPYMSFHEFPTNDMQRQKWVHAIRRDEGPKFDIRRASTLVCSQHFTAADFIQGSCRLK
PGVIPSRFQWNNFHVQPQKQSAFERSSARLGVDVRAPKTVDLQSNDSEVIVKDHDYAAYPPPGALDEALEYIAELEARLK
KISLETPTVFSRFCVSDHTIRYYTRFPSQEVFQVFWESVCPSATNLMYWTKAQRMGQEASPTPSPARKIQLIDELFMYCC
RVAAGLRERVIADIFGVSMATVSRTVITWANYLYFVLGSVPIWMSREQISSSMPEKYSSFSPNVRVILDCTEIFCESPTS
LTLHSEIFSNYKSTTTFKGLLGVAPCGAVTFISRLYTGSISDKEITRRSGILSLLEPGDEVMADKGFTIGDMITNVGATL
IIPPFKRDRQFSKTDCQKTQTIARLRILVERVIRRVKENHIFDSAVPLSLSGTIDQIWHNCCFMVNYQGPMFLEH
>24653084_DM#DNA/PiggyBac gi|24653084|ref|NP_610793.1| CG13151-PA [Drosophila melanogaster]
MECVLDEELLANIKCSDQEEEDEDGEKMEVEERLPPVDSTVQSASFNGDDSDPLQEAVCNFPWIFEDSDMLMNEDQLADV
VLKKEDSARPAAPKRGRGRPPNNNGNYTSPCGQLWSVTRSPDISAEDLPLLGQQACGKGPARTVSNAVEAWMLLFDDEML
RSLLRHINEQMRKRRTATSVQRPLDVVELRAFLGLSYLCGVFRNARHNGPLDELWTLELGNAIFRASMSLARFESISECL
AGNCGWSEGQKLWQRLIINCRSYYGCSSWLTVDETFCAVAKSRMTLCCDARTLYMANAVVSRNQRCPDKDVEQLICDFKT
TGRNVTLGSRYLNLTQCEQLAQRQISSLGKLEANSPHWPRQWPTESPLFGGSSKLIPLDGDAVFCCGLSSQVDAVQAYEQ
TSEACQQFYEHSQRFSTAHATPAPLKKQINPFLQLLHFVLNAAAVNAWILLRLSPKGDAAMDQRDFQRQLGLFLTQQRLQ
RRLQRRSTSTSLVMRLQICEILGQSSQRLLSEATGEAKLTHSVGVLTPDKMSLPLGINLASRYGEKHRRCKPCARNKRGT
KSRTRCQQCLQHRCGNHLISRCYECVGILPGQLPEGNMVDEGAT
>31240001_AG#DNA/PiggyBac gi|31240001|ref|XP_320414.1| ENSANGP00000023252 [Anopheles gambiae]
MADNLNNIPNCFPNNEDSSSDSDHDAKSDESDMENNIEEVMQASIMEELDEDSQEQATGRCVNALEARSSWKPWAGKQKP
FPFFRKKRLRVDLPAKSTPYEIFSLILDDKLVAHIALAMNLYMEKKNAQKSKASKWLETNPKEVRKFIGLMIWMDLVRVG
RLEDYWSESALYNFAVPRAAMYRERFRALLGAFCFYDDGTSKTDYKEPGKIGAFIDVLQSKFQALLHLGEDVVVREMLAL
GRDRTSFKQYIPASAHRHGRWALFKLCSLEGYTWGLKLCTEQRLIGEAQLANSVCMELCEPLLNQGRTVYIDNFHASFDL
AQALLANQTHLVGTVRVNGSSMPKDVLLAKLRKGEIIARENDDGVMVLKWKGTCTMGLLSTKHSPALVPMESQVRSNRRW
IRVARIQPEAVIAHIQAKGRPDRSDAIGPHITDLRKGMKWYKQVGLVLLLQVCVTNAWILHRMVTKKKLKLATFREQLVD
QLVPLPNPTVERGLSGGEKKYTHHLEVRTDGNGRTVRRSCANCYAESRKTMSHYEAGRNKKATTTFCGSCPKQPQLCMPC
FNKLH
>31203561_AG#DNA/PiggyBac gi|31203561|ref|XP_310729.1| ENSANGP00000023466 [Anopheles gambiae]
MFPLPSNCDPVFTMAALGPYVVIEPLDSEYVVNDTGPAACAEATPNTDGGGEPEQQSDDDDLICLWEEPQTFGIFDEPVG
TNVPFDGADERTASEYAALVCDDALFDILVKGTNRHRKQWADCMRAGGQSVEPYRKVTVAEMKRYVGLLLVMGQVRKDCQ
HCYWSTNPLLETPVFANTMSYKRFQQISHYFHGMKQANRTYDAKPVLDHLVPKFQALYAPKQQLIVSELTIPQDVLNGQQ
TEPPNHSEDAQGSTPESAKRLRLLCESDTGYVLNVELANQQLDQVALTDVSIVRPYFGRWHHVYWGNDGITVAAAETLYA
NQTLACGTLRNDPDGTVAPERKSPVLVMDGQGKRILSTIHGAAAMQPTEGEPQGPPPACVADLNRHLADLERFEGLLVEE
YLSNASVGWHIRTVLLLINVALLNAYILFSQTDTGSRFTFNVFRLAVAREWVGASEPLEEPTKFLPLIRGRKRKFLPLIP
GRKRKETGLHNRVPKHPARN
>Harbinger-5_AMi_tp#DNA/PIF-Harbinger 788-2673 R via tfasty with Harbinger-1_Crp_tp, 1 frameshift.  [Crocodylidae]
WQPGEPWPAAASASAPPRSRPRGAAGHATAGRQQHQLLPGRAPAPGPPEAADTGRSRTPPGTGSPAPSRQPRRPRTRGKS
HPGPGPRPCPAPAPGPSPRPPLLARPARTPLAPGSPPQHAERRDTGQTFIEQPVSPRLGGHGPLTRRGRRRSRRRSPPRR
PGAGTCSAATDSPPGGGGGCGAGRACPPRRRSSGSRSRSAGVPGAPAGSAAAGRSGRGSPPPAQTAHRAPPAARAAGARS
GRSGGAAGGRPRGASPERPPAGRAGARPAPRPSCPGAPRAPSPGAGGRAAAQQSGGPAGAGGSGGLGLEPRQQVLPAAWP
GPPWEGGRGGRRPAAGPRGASGDGGSGGTHLGPGLPGQLTMVPGHPHAAXLRSEARQRRAPGAEHLISQMLQTLTKAFCL
LPLQGQHLDAGERPQGPAGPPPQARRHPPLEPPGGASCTSGAARTGPACSGGWWSRWRAGWRTGGRRTSPGRPPGRRRSC
GRAGPAGPSWRPWSGGAWSCRSSSWPPSRGCAHAPPRLAPRPGPAGPLGPARRPAAGPRQRPGAGAAAPAGRRHPRAPPR
PPDPRXNCLRPGCWPPAAGLSALGGPTPQPLTDGLGDGVRHVKCL
>Harbinger-3_BF_p2#DNA/PIF-Harbinger 6916-7287_R [Branchiostoma floridae]
MAEGNAGRSRGSRCTWNYEETAFLISVWSEEEMLRQLETPRNKFAYVKIVDRLAEEGIIRTFDQVKTKIRDLKHDFKKTW
QHNHKSGNGRLDPPHYQALKEFLGCREALEPSSLFESTEITGEF
>Harbinger-10_MLP_p2#DNA/PIF-Harbinger 2267-2752_R [Melampsora larici-populina]
MLQACVNVHKPEARIIVGFDASFWSTAHIHPSKFHTLYSAVVQNFVSLPKVTPKTSRFITSMSVPPSQNTTTQTPEPDSQ
IRVNWSEPEQEQLAVSWVATSTRPEHSNNMKGDAFFKAIEEHFKAHSVTTRTAKQCNGQCVLNSIKASRNQALTNFLPSG
GE
>IS4EU-1_AA_tp#DNA/PIF-ISL2EU 360-705, 976-1919 [Aedes aegypti]
MKISCVFRTQDMKMSATKLRDFSTTCQEESQTFVGTTEEQKRSEPGAGVSVNRTVCCVPGCNQRYSPGVSFHAFPLKSDE
ERYRIWTKQLRLKYEPTKTARVCSNHFSIRNFIPPFDAGIQVDTTDIDKRQIKRSCAISFGEDEDDMAAWTGLRSKDMLQ
SIVNAVMILKEFKKRKHSSVTIDEEILIVLVKLKTNLSFRCISVLFRIHAQTVSVCFYRTVPLLSAALKPLIYWPTSEQI
SKNIPHYFRPDFEDVVVVLDCTEMPIMKPKCLHCRINTYSHYKSRETAKYLIGVTPGGTISYVSCGYGGKSSDKQIVVEE
KVLDLLTPGQAVMTDKGFMIDEECKRRNVKLVRPPFLNGPQKQLSKFEATQNVSIAAARVHVERAIQRVRIFSFFNTKID
SRFLSVLDDLLLISCAIVNISSPIIANTRF
>Harbinger-N1_DPe_tp#DNA/PIF-Harbinger 239-775 R Fragment and on wrong strand, element needs to be flipped [Drosophila persimilis]
MERHCFDILVNRLEVLRKKDTNCRAAIPLEKRIAIALYTLGSSSEYRTVGRLFGVAPNSVCNILHEFCRALIRAQPPSWT
RPSPCTHVNFCVVRANLQFSPAICQPAGTQARHSISPCRLLLFSCLLHCVIILYIINNKKQIYLFNVPLEEFSGTKSILL
ISFWSAVLPSCSVVVFVFC
>37650829_DR#DNA/PiggyBac gi|37650829|emb|CAE51059.1| SI:zC8A9.3 (novel protein) [Danio rerio]
MAECGRRGLSLLEEARSRYESLQISDDVFGESGDDSSENPFYSTTGDSNSDNYPETNADDARVNETRSQSCVPPGSVSSG
QAQEEGWGDTLRDLSLPHYQDTHGPTQKMSATATAMDFFQLFVPDNVIQNMVTQTNMYAKKFQERFGSDEGWTNVTLAEM
KAFLGYVTSTSVNRCESVLSIWSSGFFSNRSIALKMSQARFEKILKYFHVVAFRSSQGGSQGLYKIQPFLDSLQQSFSSS
FRPSQTQVLHEPLIDEDPVFITTCTERELRKRKKRKFSLWVRQCSSTGFICQIYVHLKEGPGPDGLDTLKNKPQLHSLVA
KQLCQNLAGRNAIIFTGPSITSLNLFQEFEKQGIYCCGLLSIRKSDCTGLPQSMLINTEAPQQRGQSHVKMRGNMSIINW
YNKGNFRFLTNAYSPTKEGVIIKRKSGEIPCPLAVEAFAAHLSYICKYDDKYS
>Yabusame_BM_tp#DNA/PiggyBac  gi|41016738|dbj|BAD07480.1| putative transposase yabusame-W  [Bombyx mori]
MDIERQEERIRAMLEEELSDYSDESSSEDETDHCSEHEVNYDTEEERIDSVDVPSNSRQEEANAIIANESDSDPDDDLPL
SLVRQRASASRQVSGPFYTSKDGTKWYKNCQRPNVRLRSENIVTEQAQVKNIARDASTEYECWNIFVTSDMLQEILTHTN
SSIRHRQTKTAAENSSAETSFYMQETTLCELKALIALLYLAGLIKSNRQSLKDLWRTDGTGVDIFRTTMSLQRFQFLQNN
IRFDDKSTRDERKQTDNMAAFRSIFDQFVQCCQNAYSPSEFLTIDEMLLSFRGRCLFRVYIPNKPAKYGIKILALVDAKN
FDVVNLEVYAGKQPSGPYAVSNRPFEVVERLIQPVARSHRNVTFDNWFTGYELMLHLLNEYRLTSVGTVRKNKRQIPESF
IRTDRQPNSSVFGFQKDITLVSYAPKKNKVVVVMSTMHHDNSIDESTGEKQKPEMITFYNSTKAGVDVVDELSANYNVSR
NSKRWPMTLFYGVLNMAAINACIIYRANKNVTIKRTEFIRSLGLSMIYEHLHSRNKKKNIPTYLRQRIEKQLGEPSPRHV
NVPGRYVRCQDCPYKKDRKTKHSCNACAKPICMEHAKFLCENCAELDSSL
>PiggyBac-10_SM#DNA/PiggyBac 784-2484 [Schmidtea]
MSRRLRSANVLLEKINDIDAECSEDDQEILDMEIDNTENYDPLETDSNTDENEENISNVCRRRKRRRVLVSSDSENGEEV
SEIAMDGTVWQEVKTGSNPGRAPSHNIFRETSGPTGYSKRNIMKGEVRTAFSVIIDKNIIELIRKCTETEAFRVLGYKWE
LSTAKLYAFFAILYARGAYEAKNIDIALLWNKKWGPPFFSNTMSRHDFTEIMRFIRFDDRNQRSQRLQTDKFAMISEVWY
KFIDNSQNCYKPGPYITIDEQLFPTKARCRFTQYMPNKPDKFGIKFWLASDVRSKYIINGFPYLGKDESREPSVPLGEFV
TMKLAKPYVGCGRNITTDNFFTSLPLATKLLAKKTTIVGTIRANRKELPRLAKLKNDDMALFSTKLYRSNNCMLTVYKAK
PRKKVLILSSMHNSVQVEENDTRTPETIQLYNSTKFGVDVTDQMARNYSVKSKSRRWPLQVFFNILDLAGINAWVLYKET
TGGEITRQEFLFQLAEELAIEYQQELGKENQPIPIASTSTGSRERKTCQIRYCKDNKANKICLKCKKYVCGKCTVEKPIC
KKCDEKE
>MuDR-3_SBi_p1#DNA/MuLE-MuDR 1157-3948 via tfasty with MuDR1_ZM_p1, 1 frameshift and 2 stopcodons. [Sorghum bicolor]
MDNLVTLYHGGSVEKDQFGNVDFVGMQTVPLMFDERPLFSELMGSARDELKCNSNEEEILVEGVIHHGGSGTIFRRLVPI
VSEVQWDKYVKTVMKSEFKCLDLVVRNLSKEPGPLVDSPLNWQPPIGALxLDNPAPSASLIPIQDVGVEDVVVVPDAQSG
PNEVGCVHTPMTQTIPCKWRSCIIHFVSIPSFDLVVSIVCIFVVLLxVTIQVMIVVISVPPTFNVDAAFIASNSLDVNIE
DDEEPYGTARAVDSDDDRPVAPLSEQEMELIRRFCPDRDPLVHEFSDLSHSQNAYAEGRDDELLEAPEPGESVQIQKGMI
FNDLPSLRRWLQQYSVIRKRPFKVMHSHVERRYTVVCEMSDCNWRVCARKQKATGKFKITKIVGPHTCAQTDLQQKHRQL
TSTLIASTLCTTLKGQPNLKVRTIMDMAQKIFKYDIKYGKAWRAKQRAWKMIYGDWEEGYEQLPAMFNAMKAANPGMHYE
YIPKPNEWRNGRQIFFRAFWCFPQCVQAFRHCRPVLSIDGTFLLGKYMGTLLVAISCDADNALVPLAFALVERENKDSWG
WFMRLVRIHVIGPHREVGVISDRHQGILSAVQEQIPGYAPLHHRWCTRHLAENLLRKDGTKDNFPLFEEVARMLEVPFFE
EKLEQLKTATNAEGRQWLLGLMREPEKWTRAHDNGGWRYEFQTSNMAESFNSVLKGIRAMPVNAIVSFTFYRLVAWFNDR
HAQALQLQSNNMKWAPRAKKHLDKAKERARTHDIECFDHATGKYQVTERGGTTSDGEIRPSRSYIVVLTDFSCGCGRPRQ
YHSPCSHYIAAARHRNFDYETKIPWELSVDSLVLTWSPRFEPFLDEGQWPEYIGPRYIADPGARWNKRGTRKRTRHKMVM
DQISGRTRRGRATPFVTDPEQNQCGKCGRLGHNSRTCHWPLSQVHLIFYVL
>Sola1-9_AP#DNA/Sola 991-2825 via tfasty with Sola1-10_AP, 1 frameshift. [Acyrthosiphon pisum]
RPKKGRKRKHIHQSRSNIKVLKNSNLGYYNQKNIKVIPKKFKDYDCKCPMKCPQKIPLNKRKEHFENFWKLGEYTAQNAY
IATLVHELPVKRRYGSSNNSNFNKQFTRKYNLDNTQVCRKMFCETTNISTFRVNTALKKMHGRSPILDQRGLKNGGLNKI
SEEKLKTIKDQINKIPKYTSHYCREQSNFQCLPPEMTIEKMYLAYREEENEPVSFSTYKRYFYNCFNLKFKNLKKDTCNT
CDSLKVQINNEQNVMKKEELNIKHTEHLNLAENAQTLLKIDLDNAKQNEHFQCLTYYMEKTLPLPRLPTNIIFYKRQLWL
YNTGIFSGKDNQGYCYVWLEGQAERGAQEVGSCLRKHIKNNLNNSIKELVLWSDSFGGQNRNIKIVLMMKTLFNNTELET
ITLKYLYPGHSFLPNDRNFSDIESALKHQQRLYTPDDYIHIMKTCKNKNPLTVIKMNKEDFVSTEILEKKITNRKVSESG
DKMNWLAIRQIKLYRSNPLSIFMNNTLSVDNFVEINIKKRCRGRQSTTPFPAEILLTQLWPDGKEINKLQLEDIKSMMHL
IPADAHAFYSNLIGRNSEIDEDVGGFNELLDFEMETNQIIMLTTSQVVTLLV
>Sola1-3_AA#DNA/Sola 400-2851 Via genewise with Sola1-2_AA, 2 introns. [Aedes aegypti]
MSLEYIKLYGGGSESEGSSDEDFAGFDLSAPASRYEKFGESIRNAWMLDLNQLGNRARFGQRDDGNPVGAHPNVKFSMVS
SKPPRFSASDVESNGNGRDPAVAQQANNSSPLEDEPTVAVSPDDNNSHSDSIDSEGSYFAEEHRGKRKRTKKEQRKAVVA
KKRRVCHPPKLELCGCRGRCTDSLSKDDRISIHRAFWKLNFAEQGEFFRERVVRVSVKKRSTERHYLKEPRKLHSYVYSL
EMADKRVVKVCRKFFLNTLGYGEHCGNMVYRCLRTDNDGISGKPKMRGKYKRSRERKDAVKAHILLYNPTISHYRREHAP
NRLYLPSDITEKSMYENYLKQRPNLNVSYTFFCRVVKEMNISLVKLGHEECETCVTAKQHEDQLGHGDENARHGCSVCER
HQQHIHRATAAREQYRKDGETIPPNEIVLAVDLQKVIQLPRLDGFKTIVFSQRLVAFNETFAPIGEFAKSNAVIACLWNE
AVAGRSAHDILSCFYRVISHLASRRKITFWLDNCAAQNKNWGLFLFLILLVNSPAIQVNEIVLKFFESGHTFMAADSFHA
AVEKAMRQNPTITYPDFVDVVSKAKKRVDVFDMQVSDFFQTPFNVSQYTLNKCTKRPYIDKIKKIIVQKGCFELKYSESV
ELFSKSQMKQINAEGFNLGNSLKMQRNPVGIDAVRKDSLVSAILPLVAEEKKAFWENLPIKTE
>piggyBac-1_DW_tp#DNA/PiggyBac 337-2101 via tfasty with PiggyBac1_AG_tp, 1 frameshift. [Drosophila willistoni]
MGDQVEFIYNTRLRSRRVSADFYSRLTNALLNDXQQTNRDEDEEGEEIDPFDTGDHDDAXYVPNDDASDIENDVXTIEPN
XIFDSDEDIEDETDQVAGQCDDGFFYGKDGTKWSKNEPSAVIRTRQHNIMRFRFGPRQXNAIPIEVFKLFFSPNISFIIV
TQTNRHGKEATRKWNAENPDSKPRVWNDLTSTELDAFVGILLAAGLSHNNMQTPEVLWXSDALPIFRAAMSYRRFKQXSR
YIRFDDSRTREFRQQSDKAAPIRDIWNFLNENLANNYDAHDVVTIDEQLFPYRGRTKFTQYIPSKPAKYGIKVWWACDAK
TKYPLQGKLYTGKEGTNREVNQGENVLMQLSNRYSMSGRTIVADNFFVTLDAAKRLAVIGLALVGTIRSNKRCLPSEMKK
HDSRPVLSSLFGFHENVSICSYVPKKNRAVNLLSTVHYSKFCEGEAKKPEAIMFYNANKAGVDSMDQMVSHFTTKRPTRR
WTYAFFCNMLDIMALAAYCICKEVDGYEKNSARRTFLNNLSKHXIRANIESRMDDIHVTNKRECRCRLQGSEKVRRKTRF
FCTACNQPVCQQHSKTAYTCFVCVSQNP
>IFP2_tp#DNA/PiggyBac is gi|28565744|gb|AAO43225.1| PiggyBac transposase (PiggyBac ubiquitin-transposase P replacement vector EP3005) [Trichoplusia ni]
MGCSLDDEHILSALLQSDDELVGEDSDSEISDHVSEDDVQSDTEEAFIDEVHEVQPTSSGSEILDEQNVIEQPGSSLASN
KILTLPQRTIRGKNKHCWSTSKSTRRSRVSALNIVRSQRGPTRMCRNIYDPLLCFKLFFTDEIISEIVKWTNAEISLKRR
ESMTGATFRDTNEDEIYAFFGILVMTAVRKDNHMSTDDLFDRSLSMVYVSVMSRDRFDFLIRCLRMDDKSIRPTLRENDV
FTPVRKIWDLFIHQCIQNYTPGAHLTIDEQLLGFRGRCPFRMYIPNKPSKYGIKILMMCDSGTKYMINGMPYLGRGTQTN
GVPLGEYYVKELSKPVHGSCRNITCDNWFTSIPLAKNLLQEPYKLTIVGTVRSNKREIPEVLKNSRSRPVGTSMFCFDGP
LTLVSYKPKPAKMVYLLSSCDEDASINESTGKPQMVMYYNQTKGGVDTLDQMCSVMTCSRKTNRWPMALLYGMINIACIN
SFIIYSHNVSSKGEKVQSRKKFMRNLYMSLTSSFMRKRLEAPTLKRYLRDNISNILPNEVPGTSDDSTEEPVTKKRTYCT
YCPSKIRRKANASCKKCKKVICREHNIDMCQSCF
>PiggyBac-2_HM#DNA/PiggyBac 464-2450 via tfasty with PiggyBac-5_SM, 1 frameshift.  [Hydra magnipapillata]
MERHKFYDPELMSQDDVFNLLDSIDAGELDTDIEDNFLSDDDPDFVPNAHHFNMENILDNDADETNEILTAMDETNIEPG
TSNSEIQLVESEEIEIGPSQSKKPQLEQVENDNFVNTFIGSSTEIDPKNIAFKNILWRKKNIQLEKKQIQFRGNEELPAR
FYELKTPYECFKYFLEDKLYQEIANTTNLYARQMNISTKFVTTPAEIQKYVGILFYMSIYRYPNTREYWGENSFEPVRKT
MTKNRFEEIRRYLHFNDNTKMPAQGDSNFDPIFKMRPIIEYFNIRFQSVPMSQRLCVDEQMCSTKMVSHIRQYMPAKPHK
WGMKLFVLCDTYGFSYGFELYSGASDNKIPNGAPDLGAAANVVSRLSQIIPDHMNHIVYFDNYYSTLPLMIYLYSRGIYS
LGTVRANRIANCKLPTDKEVAKKPRGFSTEYVGSCYGVDLSTTLWKDNKGVLLASTYVGVLPFKNESNNTLKASRYDRAQ
KKRIEIDCPNIIREYNAHMGGVDLMDGLLGRYHIRMKTVKWTSRFFYHVLDLAMINAYLLHKRINRQNKACNIQLPQFRK
EVAAMLCRFQTDEPQKRSVGRPRSTNAEEDPAPKRLGKRTYLPAADIRFDGKEHFPQWLDRSGKRQCKLPGCKSETQCTC
SKCNINLCCTAAKNCFAIFHKQ
>PiggyBac-2_XT#DNA/PiggyBac 1895-3664  [Xenopus (silurana) tropicalis]
MAKRFYSAEEAAAHCMASSSEEFSGSDSEYVPPASESDSSTEESWCSSSTVSALEEPMEVDEDVDDLEDQEAGDRADAAA
GGEPAWGPPCNFPPEIPPFTTVPGVKVDTSNFEPINFFQLFMTEAILQDMVLYTNVYAEQYLTQNPLPRYARAHAWHPTD
IAEMKRFVGLTLAMGLIKANSLESYWDTTTVLSIPVFSATMSRNRYQLLLRFLHFNNNATAVPPDQPGHDRLHKLRPLID
SLSERFAAVYTPCQNICIDESLLLFKGRLQFRQYIPSKRARYGIKFYKLCESSSGYTSYFLIYEGKDSKLDPPGCPPDLT
VSGKIVWELISPLLGQGFHLYVDNFYSSIPLFTALYCLDTPACGTINRNRKGLPRALLDKKLNRGETYALRKNELLAIKF
FDKKNVFMLTSIHDESVIREQRVGRPPKNKPLCSKEYSKYMGGVDRTDQLQHYYNATRKTRAWYKKVGIYLIQMALRNSY
IVYKAAVPGPKLSYYKYQLQILPALLFGGVEEQTVPEMPPSDNVARLIGKHFIDTLPPTPGKQRPQKGCKVCRKRGIRRD
TRYYCPKCPRNPGLCFKPCFEIYHTQLHY
>PiggyBac-2_SM#DNA/PiggyBac 458-2185 [Schmidtea]
LSLDEIHDFLLEEDEEEHNEVRVAIEPPEEMPEAATDQDSDASDDEVMCDPGHLPRRILLSKVLNNDVDIDQSEIEFNPP
STSTGRGSKRRKKVVYMWHTDKSKVANLVPDFSETREVVDAPKTNPLEFFEERFWTEDWINVLCEQSKNYAHQKGIPCSD
VNADNMKLFLAILILSGYNKVPNRRLYWSESPDTQNKLVMNSMRRDTFDQIMRCLHINDNMKMDGDRFYKVRPLFEHLNN
SNKDEKCGEYYSIDEIMVPYYGRHGDKQYIRGKPVRFGFKLWAICTSDGFLHNVEPYCGSHTRISDRGFGLGGNVVLEMI
ERVNIKPGQHIVFDNFFGSVALLKELSQKKIAATCTLREDRLSGAPLRPRKVLEKEERGTSDEAFTSCISVVKWKDNKVV
SVASNKLRSDPAKKAKRWNRVDKKHVEVDLPHSIHVYNQHMGGVDVFDQQVAAYRCRIRSKKWWWPLFAWTVNAQVVNGW
KLFREHEKKITLLEFSRQLVISTLTKYGKPKAKPGPVPMPVVNTVRYNSQHHWTYKGKSPYNRCRECGSRTIYFCSVCNI
PVHPECMKTFHTKKET
>I_Ele9_gag#LINE/I 73-1413  [Aedes aegypti]
MTAASSGDPGGSKESWPCIGNPSNVEFGSLTYLLLRSKDDKVPLTSNPFIVGQSVELAAGGPIEGASTEAQCTRYTLKVR
NQTQVKKLLRMSTLLDGVEVIIEPHPILNVSRCVISCFETVHMTEDAMLDGLNSQGVIRVQRITRKEHGKPVNTSALILT
FGRCDYPSHVKIGLLRVATRPYYPNPLLCYGCVRFGHPRVRCPGPKRCVNCSAEHELLEGEVCSFAAHCINCNGPHRPTS
RQCPVFKKEMEVVRLKVDQNLSFPEARRRIEQDLGSYAAAAAQQTADRKRLDELEKKMEQKEALISQLLVKIQDKDERIE
QLLLQINRMKTVENQDSQQNTPTQPLKSCQANKPSEPVKPIEAIQKAREQLTTATRMQLRNRSPATTQTAGTETRNRKKK
HNRSTNGSPGRQSPPPKKTPAEEDPNQEELSDNGIEIEETPPSQSFR
>Polinton-2_NVi_atp#DNA/Maverick 6-608 [Nasonia vitripennis]
FLKDLDRLCDTTIERVIIYYAEWQPSYKELQSKKVEFREGLPQTSDWAADPRPKLVIIDDLMRESSSSGSIVDIFSKASH
HHSLSVIFITQNVFHQGKGQRDISLNAQYIVIFRNLRDRSQILHLSRQLCPEDPRFLQEAYWDATSRPYGYLLLDLKQNT
PDNCRFRTCIFPDDELHYVYVSRNKKIKGGDTLNLVPIASL
>I_Ele15_pol#LINE/I 679-5886  [Aedes aegypti]
MANSRGAFGLEAIPQPAPSNRPRHLSSISDEENSATNSRGADRPEVRTQPEQSNRPRRSSDENINYASFSPARAPGSLGP
SSADDFSTPELVDNPWRWGKSGRGTDKGINTHSPTDHVGVKLNRFSGRTRGEILVPRRTSRESSQQTKPSTPQPVLPGQP
ETSVSGGKTRSNRSSSTQTKPSFLPAGCIKPHRSEALAKSRSNKIKITLLSSNQQTHAHGGHPTTTSFEDPITMGKSDSH
FLSSHQIQTATCQPALPGHPELLVSGGKPHPRSPTPDNNEPSPLLAGRVKCPLDGALAKNRPLSNQQPPTHGKSPTPTAP
DHPITMGNMAPYTAPSSPQSSSPLWESSTSHANASTGTFSKDPVSPTDEGPRSTVEPNRISNIRKLPSDCLTNSEKYDSY
IASSLGPGALLAPCCSTNRASLAVDLFGHPMHSNLGGKSQQLAFSHEIACDVDINSNSNLETTSSWGDSRPAAVWGLERL
NRFQHSAGEIGSETGNNPNADGRCISAPSPPSRLSETHSSTHSHPNVNRNARLILQWNINGFLNNLSNLEMLVNQHEPLV
IALQETHKASVDIMNSRLGKKYSWHAIRGSNFYHSVALGTINEIPYEILQLDTDLPIAAIKISWPFPMSIVSFYLPNGKL
TNLKNRLIDTFDKIPDPKIILGDGNGHHTTWGSRVNNARGSAIFETATETGLCILNDGCKTFIRGRVETSIDISLASHNI
IDRLLWSVDNDLSGSDHFPIWIQLNSSPPKTSRRPRWLYDQANWKIFQDRMEEILESSPPSSIDHFSNSIIEAATAAIPR
TSPTPGRRALCWWSETTKKAVKARRKALRAARRLPADHPEKIAAMEKYRDANNKCKFIIREAKEKSWTSFLDEINDNQSS
AELWSRVNAIQGKRQTRGLVLKSGNQTTRDPILVADALADYFGDLSSFHRYPLDFQKKHQPANAAFAMTQVPGFPVQNFN
KEFSMDELLFALSKSKGKSAGPDQIGYPMLKKLPPIGKRKALDLINSEWLAGTLPDSWKCSLVVPIPKACGTNYDPSDFR
PIALTSCLAKMMERMANRRLVEYLEKNDLLDNRQHAFRAGFGTGTYFAALGDILNGALERNEHVEMASLDLAKAYNRAWT
PGILKCLMDWGVTGNLASFVKNFLTNRRFRVSIGNHQSKEIPEETGVPQGSVIAVTLFLVGMNGVFQSLPKGVFVLVYAD
DILLLVTGVHPKMVRRKLQAAVNAVAKWAIKVGFEISATKCARLHICNSKHQPPKKPITVNGTAIPNKKTVKIVGVTLDR
HLSFKAHFDNVRSACKSRINLLRLISGKRKRSDRTSRIRVANAIVNSRLLYGIEITSQRFDELISNLGGTYNNAIRIISG
HLPSTPADSACAEAGVLPFRYKLANSIGSRAICFLERTKNDGSEACIEIQANQILRSVAGIELPSVSERHRNGARSWSAR
KIKVDNYLKQKLKKGGNPRLAQALFLDRIRTKYRIYNVRYTDGSKALGKVGIGWCGIGFRESRSLPSQCSVFSAEAAAIF
QAILQPSDLIGPVLIATDSASTIAAILSDTNKHPWIQEIQDVLDDEENITLMWVPGHSGIAGNEEADRCANTGRDSERLT
DIVPSADLKLWLREKVNDAWRRKWQSERNLFTRKIKGDVRKWEDRPDRREQVILSRLRTGHTRVSHSMSGGPNFRRICET
CQVHNSVEHFLYTCPTLELLRKQYDMGSIRTSLQDDRSSEAVLFRFLKDAKLFDEI
>I_Ele25_pol#LINE/I 2018-6619  [Aedes aegypti]
MASDRRSAGELEVLPQPASPDRLRHHAQRISPLTSLDSRGANVPDALPQPESLGRPRRLEGEMDEELLFLSVRCPAKTPG
SQSPVGAVVSHSGTGGQPLALGEDLEEGNQASEPISLDDVGGEGFEVIGTRRALPATPMDNVGSQALFLQTNAKSTKTSN
FEALLPSSIPAGSFAMQPGHPGHPNPGGKSHSVNSFSGTLSSPNSMVPGVSVRHHMQRYPNPVETSLSPNAPSIPSSGFS
ETSLSDNRSQRIDSPSGLHGHFNPCDKSPSVISGLTTRPSETASLATNVAAAAHSQHINLGDRSFLRQTSQNSSGTSSIS
RTSFPTPTLPKPITFLLQWNMIGFYNNLANLELLVHDTAPWCLALQEVNRVSVEQLNRSLRGQYRWTMLRGSNLRHSVAL
GVLTSIPFEVLRLDSDLPVVGIRLNGPIRISVLNVYLPCGTLPNLRERIDRILEVIPGPTLFVGDMNAHHPIWGGHRSDA
RGIALQNIFEEHDLIVLNNGANTFFNGHTSSAIDVAAVSRSFVNRFQWSVDSDMYGSDHHPIRIGSCASPPALARRPRWM
YEKADWNEYTQSFRYLSRNHAPTNLTDLAKVIHNAAESSIPRTSNRPGRKALHWWTDDTRKAVKSRRKALRTVKRIPIGH
PNKENALNLYRRRHMECKRIIADAKRASWENFLDSINPTQTSFDLWSKINALSGKRKATPLTLQIQGSDVSDPPAVAMAL
GEYFAKLAAIDSYSDFFKRRIQPTLSSVADFSVPDDHDNAPINNPFTLSELIFAIKCSTGKSAGPDGIGYPLIKNLPPSG
KLQLLDLINKTWLTDSFPSEWSESLIIPIPKTNSDSRGPSKFRPVALTCCMSKVMERMVNRRLKQFLESHDLLDHRQHAF
RAGHGTSTYFSQLGDVLHTAYSSGLHTEIVSLDLSKAFNRTWGPLVLRQLVQWNLSGHIMRFVQNFLQQRSFRVLVGDFL
SDSYREETGVPQGSVIAVTLFLVAMNGVFSYLPSGIYVFVYADDILLVVSGKTPVRVRIKTQAAVNAVYKWASAVGFELS
ASKSVRCHVCPSNHRNPVPIMVNGAVIPNKKTVKVLGVTVDHGLTFRHHFDSVKQSCQTRLNIIRTISRPHRTNNRAVRF
RVAQAIIDSRLTYGLELTCIALDRLVSTLAPVYHGYIRIISGLLPSTPADSSCVEAGLLPFRFFIYTAVCRKAAAITEKT
SGDDRIFILSEGCRILQSAANVDLPPVAKVHWYGDICWHSSKPNIDNAIANQFRAGDNSSFLRATVLDWLHNKYPSHEKR
YTDGSLSNLGVGLGVSASDISLSLSLPPTCSVFSAEAAAIFIAATIPSDRPVLILTDSASVVSALQSERPTHPWIQGTLE
NALPNTTYAWIPGHCGIPGNVAADNLAGTGHSSPRFEETVPFDDVKRWISKTFKNVWGTEWAQSYSPHLRKIKLSTENWI
DCPLLHDQRVISRLRTGHTRVSHNMDGRGPFRRMCSICGVQNSVEHFICTCPQYESARRSFGISGSIRSALGNDAATVST
LIGFLKAIXLYGQI
>I_Ele17_pol#LINE/I 2143-6171  [Aedes aegypti]
MPTCSPVIFQDSRGPVGAEATPPPEPADNLRHPGSSGRGTHKGRNAYPPVDNVGVKTTSTSTSFVNGTHKGIRTRPPLKD
NVGAAVTQDNPVSSPSSETPSAKTISSSSTTSSPRRNRTTTSTNSGSPNSMATINATKRTSFVLQWNMNGFHNNISDLEC
LIQSNPPVILAIQEVHRTTVDKMNRSLGGRYRWTYKRNSNVYHSVAIGVLESIQFSTIQLDTILPIVAVTLNDPFPVTVV
SVYLPCGKIPNLKNAFSQVLESIQGPKLILGDINGHHAAWGSPRSDKRGETLLELTEAMDLVILNDGSITFTKGQHESAV
DVSLASPSIVSRLLWSIGDDPLGSDHHPITISLCQLPPETTRRPRWIYDQADWTSFQTAIDEYLCISEHNNLQDFIQAIY
QAATTCIPRTSAKPGRKALPWWSPETKQATKARRKALRAAKRLPVDHPDKESAISLYKIKRNECRQVIRDAKDQSWENFL
DGINSNQSSSEIWGKVNALSGKRKTRGMAIRHEGVITRDPGIIADALGYYFASLSAFDKYSDNFIRQNQATVDDLDRIQI
PDDTAGLPINEPFRLIELEMALAKCKGKSAGADEIGYPMLKNLTPRGKVTLLRLLNKEWSGNTLPQEWKSSLVIPLPKNG
SSTSAPEDFRPISLTCCISKVMERMVNRRLTHFLESNELLDHRQHAFRSGHGTGTYFATLAQVLSDAKTKDQHVELAALD
LAKAYNRAWTPGVIQQLNKWGLSGHILHFLRNFLQNRTFQVCIGNHRSKHFSEQTGVPQGSVIAVTIFLVAMNDIFTSLP
KEIYIFVYADDIMLIAVGSTEKALRRKLQASVNAVAKWATKSGFVISTDKSAIMHLCKASHRPIRSIVSANGLPIPLKKS
VRVLGINIDRHLTFHDHFKKVKQSCKTRLNLLRILSKRHKMANRDVRLRVASAILDSRLLYGIELTCLSTDALTTTLAPV
YHQSIRIISGLLPSTPADAACVESGRLPFERLVTETVCKRAVSFLEKTTPCSGGVLLLDEANRLLQVHANKVLPPVAETH
WNGARSWNSPRLKVEMSIKTRFRAGANSQAVTTSVAELLGSKYQNYTHRYTDGSKVQDKVGMGITDHENSRFYRLPDPCS
IFSAEAAAVLIACTIPSPNPIAILTDSASVVTALSSDVARHPWIQAIQMQAPPETVFIWIPGHCGIRGNVEADRLAASGR
SATFYTRKVPGHDIRRWISSSLRSSWAVSWHNMRTPFLRKIKNDISRWEDPKKHRDQRILSRLRTGHTKVSHNMGSDGPF
RKICSACNVPNTVEHFLINCPQYLAARASHGIAESIRSALNNDSDSIIRLMNYLKHIDLYHQI
>I-2_DWi_pol#LINE/I 1445-5131  [Drosophila willistoni]
MTLTILQWNINGYFNNYIDLVLLIKQTKPDIICLQETNLKSNNTNVATPKPFIGYFFNNSPNHHAKHGVGILIRQNIPHK
TLNIISSTCSMGIEVLSHPNIIIFNSYIPPNQRLIASDLINIVESAHKPIVYVGDFNAWSPLWGSSSRNPKGYQVEDLIV
RTNLAILNDGSATHHSTHNSFTNIDLSMTSVSLVPYSKWSISQNLHGSDHFPITINLLTHLKPEKVPPIIRFKTDYANWN
IFQSVCKKHFQFPSTNDLNLFVARITKSIKTAANVTIPQSNPKKQIRNPVWFSPSLQDLRKQKQTLWHNYKTFRNSTNLV
AYKKARALFKREAIRAKRDSFCNFTSNINPLSTTKKLWADINKLVGIFPGPLKSIRDNNVELQNSVDIGNAFGAMWSNYS
SDENFSNVYKVNKENFLSLAYSPNHISADAKYLDAQITSIELESALQHAKGKSPGYDRISYPMLRNLPIEGKQRLLEIYN
KMLDAGSYPHTWRTAIIIPILKPNKPSHELSSFRPISLLSCLSKTLEKILAKRILWFITKNKLISPNQTAFKQQHSTMDS
LLHIHHYASDALSTKNHVTILATDFERAFDRVGVHTVLEQLSRWGVGPKTFYLVKAFMTKRSIRVRVNNTLTNFYKLHNG
IPQGSPLSVVLFMIAFHSLDNIILKHKKIQLSVYADDAIIYSNCKNTNSLFLTFKQILMDIVEWGNFSGATLALNKCKLF
HICKKHRCTYPTLTVNNTTLEYTSSLKVLGLTLDSRLTFKQHCVNLRDSLNKRLNIIKFLGSKRSLVHPTSLIHATRALI
LAKIDYGLAIYGWCAPSNIKLFSPAYHAAVRRSIGAFPTTPTKCLLAEAGLPEVQTRAAQLTFKLIPKILCSTNQILLKD
FNTTVKQRRRFKVMSTIRRCSSFFKKHQLDMPYRWNKISPSPPWQLPGHTVNTSLNLLKKSKTPKNVFQQMLAAETEKVP
NWTWLYSDGSKTIDSTSFAVVSQSGTLVSSGILPSYFSIFSAEAVAILKAIKHALELKGKFIVCSDSLSTLNAVNNIYNQ
TSLICEIRHLCIKHASKIKLLWAPGHMGVKGNELADAAAKQAGHSPCLTVIPGVREDLWRNIKEILRKKEITQWDSYDHR
LKQFNPSKEPVRYPPSCHRRHCNIITRLRTGHSALTHDHLLNGKAMPRCPKCEGELSTKHILDTCPQLHNSRICLFGQTQ
PTSLLISPTLNNIKSVIKFLDVNNLLNKI
>I-2_DEu_pol#LINE/I 1575-5231  [Drosophila eugracilis]
MSLTIIQWNLKGYVNNYNQLLILIKKHSPHIISLQETHIQYTNNIPIPINYKLSTNIATNRFGGVALLVHKSIQHTTPNT
TDDLETITINIQSKLKLNISSTYISPTKNITIQTLQNAFNTQQAPSLIMGDFNGWHPSWGSPTTNTRGKITQRFIDNAHL
ILLNDKSPTHFSTHNTYTHIDLTLCSPILAPHTKWEILNDLHGSDHFPIIITLFPSTNTQKFNXPFFKLKEANWEKYNLF
TQQSNEKYPTSQNVNKEAAQINRIILSSANLSIPQTSPNTHPYRVPWWNKNLDQLQKEKQKAWKTLNRHITLENIKDYRR
KNAKFRYTLKNSKNEASRSFTSTIQPSTPSSKIWANIRRFCGLNPVKQIHAITNPDNNEVTTTNNEIANIFAKHFSNLSH
DMNFPEHFRNNKYRNNNVDYTPSPSAQSIEKQISNLELASALQTLKGSAPGLNRISYQMIKNSSNTTKNRITALFNKIFD
THIPQAFKTSLIIPILKPNSDKTQTTSYRPISLNCCLAKTLDKIIAKRLWWFATYNNLLNKNQFGFKKGKSTSDSLLYVD
YLISKSHQHSSLVTLDFSKAFDRVGVHSIIDQLQEWKTGPKIINYVRNFMLNRKIIIRVGQHRSNTLPLFNGIPQGSPIS
VILFLIAFNKLSDIISLHKEIKFNAYADDYFLIINFNKKKNISFNLGNLLNDIENWGSYSGASLSLSKCQHLHICKKHNC
TCVVTFNSMQIPTVNSLKILGINIDSKYKWNTHIDKLIPALHKKLNIIKCLSSLKFNCSTYTLINVVKATIVAKIDYGLF
LYGHAPKTTLNKLKPPLNSAIRLALGAFRSTPTNNLLQEANIPPIELKRDLQTAKLNKNLIYSKDTPIHKFVKQSKLKKK
SPPIIDRIMNLCQQFHLPFEPQKLNKLKPPWDLPNLIDTSIRLHKKSNTPKEIYQKIYEDTKSNLKSHNFIFTDGSKITD
IITYAITTETSILNCGILPPYSSVLTAEIIAILEAIKIIKNKRGKYVICSDSLAAIDSIKNTNNNNIYPNKIRSLLTQLA
PKIKLIWIPGHAGITGNELADQAAKSTNKSPLIFTPNINPTDIKRQLKSELKARQSQNLIHCSQWYQSINTNSHHISDHF
RQTHPNWNRLDQTKITRLRLGHTSLTHQHYLNQIPTPPCPFCQGNLSLHHILNTCPPLLQTKQTIFQNSNPLHLLNDLNP
ENINKILLFLKSTQLYHKI
>I-6_DBi_pol#LINE/I 1220-4912  [Drosophila biarmipes]
MTISILQWNMNGYLNHYKQLQLLIKKYTPQIICLQETHLIPYKNFPTPINYTIYTLNSAVNASGGVAILVHNSIQHTEIH
LPQDFESLCSKIQSKYTFNIICSYIPPRQHFTCNNLENVYSDLSSPTLITGDFNSWHTLWGSPRNNKKGNTLSQFIHQSP
LTLLNDGSPTHFSTHNTLTHVDLTLASATLALESVWFIESSTFGSDHFPIITTLFDTTSTPTFLPKFKLDDANWPKYVEA
SNYFHLQRPISHNLNKEAANLKRIVHQSANCSIPQSISNPHSKRTVPWWNTHLETLKKSKNAYFNILRRNISNTNIINYR
RANALLKREIKIAKRNSLEIFTSEINPNSSTSKIWSNLRRFCGLRPRIGIHCIAQPNSPNKITNSLEIANELCSFWSSES
SDDNFSATFTHHKNNILPIHQNYQPSTSALKIDSPITSLELNIALSKQKGKSPGLDRVSYQMLKNLHPAVKLRLRDHFNS
IFNSFIPQHYKLSKIIPIHKPNTDKTSLNSYRPISLNSCFAKTLDKIIANRLWWFVSYNNSIDSRQTGFRKGKSISDNLL
VLDHLISSSLSTKNHLSVISLDFTKAFDKIGIHTVVDELQSWKIGPKIINYCINFMTNRKIKVYANNHFSFTRPQHNGXP
QGSPLSVILFLIAFNKLNLVILNHKQFNFCAYADDYHIFKKINKDTQINIDPLLNDIQTWCEYSGAVLSLNKCKHLHFCK
KHSCQLRISNTLAPIDNTNTLKILGITFNKKYNWADHVASLVSSLSNRLNIIKCISSNKFNCNHLTILNIIKALILSKID
FGIPFYGNCTTSTIKPIKSIYHSAIRSALGAFRTTPIHNILFESNMMPIDIRTKFCISKTIKPILLSHNSPLKSIVTKIL
KRKKRIPKIPSVVHRALNFAVELGLPTKPPISKKPVNPPWSDVSNLIDTTLRKLPKATTPQLVYQQKFLEFKNKYPTSTF
IYTDGSKISGATSFSVVSDDISQQHLLPYYSSIFSAEIIAIYNAVLLAQHSPNSSVICSDSLSALNAIANPSNNSFYPAT
IRQILLKNVNKITIKWIPGHCGIQGNEVADETAKNAFALPLTFYDNLNISDILKQIKKHYKELQTSLFNQTNTYYKSNNT
DQNNIYNYGRLQADLFIPRHTFTKIVRLRLGHTNLTHSYLFTRPPTRPSCPLCNNEIRTPQHILTECSYLDSIRSSLFTS
TNPLQSIFIPSAPQITKIIKFLSYNNIINEI
>I_Ele8_gag#LINE/I 504-1835  [Aedes aegypti]
MASTSGGGPIGPLNRNFPGLTETFGAVTTLLLMGKNGSALPEDPFIVGESVEEWAGPVERSNIEGYGTKYVMRTRNQAQV
EKLLQLNTLKDGTEVSVILHPKFNTSRCVISTYSLISMEEKEILNKLASQGVTDVRRIMKAKKEKTPAIILTFSRAEYPQ
SVKVGLLQVPTRPYYPNPLLCFKCYSYGHSRNNCPNPQRCFNCSSQHEEMDTCDQPAFCINCEKNHRPFNRQCEVYRKEV
DIIRTKIDFNLSYPDARKRVEAGNGSYAKVTAQPRLDKTRFDAMAEQIKKQQDMIEKLEQQLQNQRSLEEKVTEMLERSK
AKETKIEELLKYVQQRDEKIRKLEAQNNNLKRLLDGMQAKQRSESLTSEPSLEMESIKRKSKRHTQPTDQQQVSKGSAGM
SPPPKRTSSRTRSPIMTRQTSNQEDTAKSNYIAESSFKSTPPNK
>I_DM_pol#LINE/I 1534-5193 gi|51950578|gb|AAA70222.2| putative ORF2 [Drosophila fruit fly genus]
MSLTIIQWNLKGYLNNYSHLLILIKKYSPHIISLQETHIQYTNNIPTPINYKLLTNIATNRFGGVRLLVHKSIQHTVLNI
TIDIEAIAINIESKLKLNIFSTYISPTKNITNQTLHNTFNIQQTPSLITGDFNGWHHPWGSPTTNKRGKITHRFIDNMHL
ILLNDKSPTHFSTHNTYTHIDLTLCSPILAPHAKWKILNDLHGSDHFPIITTLFPTTNPQKFYRPFFKLKEANWEQFNAL
THQTNKKYPTSHNVNKEAALINRIILYSANLSIPQTSPNTHPYRVPWWNKHLDQLRKEKQLAWKKLNRTITVDNILDYRR
KNAIFRYELKKRKKEASSSFTSTIHPTTPSSKIWANIRRFCGLNPAKQIHAITNPVNNETTLASNEIANIFAQHFSDLSG
DWNFSEEFRNNKYRNNIHLYTPSPIAQTIEENITYLELSSALQTLKGCAPGLNRISYQMIKNSSHTTKNRITKLFNEIFN
SHIPQAYKTSLIIPILKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFKKGKSTSDCLLYVD
YLITKSKMHTSLVTLDFSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPIS
VILFLIAFNKLSNIISLHKEIKFNAYADDFFLIINFNKNTNTNFNLDNLFDDIENWCSYSGASLSLSKCQHLHICRKRHC
TCKISCNNFQIPSVTSLKILGITLNNKYKWNTHINLLLPKLHNKLNIIKCLSSLKFNCNTHTLLNVAKATIIAKLEYGLF
LYGHAPKSILNKIKTPFNSAIRLALGAYRSTPINNLLYESNTPPLEMKRDLQIAKLSQNLILSKNTPIHKFLKPKKANKK
KTSTIDRTIKLSLELNLPYKPIKLHKNKPPWTLPNLIDTSLRIHKKEQTSPDQYRKLYEHTKNNLKTHNFIFTDGSKINY
TISFAITTETDVLKYGILPPYSSVLTSETIAILEAIELTKNRRGKFIICSDSLSAVDSIQNTNNNSFYPSRIRSLITQHA
PKIKIMWIPGHSGIKGNELADQAAKSASSMPLILTPNINTTDIKKHLKADLATKQKEHIINCSPWYQSINTNTSHPCDYL
KQSHPNWTRLDQIKIIRLRLGHTNITHQHYLNPNSIPTCPFCQGDISLNHIFNSCPSLLQTKQDIFNNTNPLDLLSKPNP
DNIQKLILFLKKTKLYHKI
>I_Ele33_gag#LINE/I 370-1674  [Aedes aegypti]
MEGHSRPPPCDPPDLARCPAWMIGDDELLHTIVLQMKVRPNDNEGANEVRLPTDPFVVGNAVLLALGTANARKVSASKEA
RGARYILRTKSKIFSEKLQKITELPDGTPVEITPHPTLNFVQGIVYDLDTVNHTEENILTNLQSQGVCKVRRIKKRDGET
YRNTPLLVLSFQGSVVPQHVYFGLLRIAVRTYYPSPLLCFRCANYGHTKKTCDNAKFPQICLNCSESHTDVVECPNPPYC
KNCQGSHKPISRVCPIYREEDAIIHTKVDRNLSYAEARADWRAANKSRSYANTVQDRLRQDDSQKDKIIKMLQEEVESLR
NVILELKTQIANLSNNNQPNVSTSTQAQVRKDNSSTGKAPTVALTRLCAMEQYIKAHSVEKPQRSSSPNSNQSIDLNESM
EFETTTHKKRKGNKNKSEPDSPERKKGVASSTKRK
>Nimb-1_AAe_pol#LINE/I 1905-5993  [Aedes aegypti]
MKISTSFVVAKSKTEESEEKMLNRKVTIVNPAINSRKSKAINRNRTTPNEEDHQNTGKMINENKTCISNHINTDPCRNND
YEHGNLMESRSNLETAVGNIEGEIETQPGPKHQHNSCEPSIISWNIQGLKTGRPEIKVINNERQPLAYCLQETMCSTEDQ
ARIRGFVTFHRKRTGGRRASGGVLIAVKVGLDCQEIDVESEIEAVAVKVGHPLNTSILNVYIPPGKPIEESEIVNLINQV
QAPLLVVGDVNANHPLWGSPSSNARGRVLEAAFNECNLAILNNGEATHIHHANGNASCIDIACSTSDLAGSLTFEVIADS
HGSDHLPLIITFPATERPIKSRKRWKIDEADWQTYQNMVHFKNLPNVDDQIGEIARAILDAAESSIPKTKGIKSGKTPVP
WWNREVADAIKNRRKALRNLKSKGKKHSNKDELLKKFQEARKTAKETVSRAQHNSWQNFVNGFSVHTPTKEMWSNFQRVQ
GKRTNSRIFSIKADGNTVTEDGEIADALAQAFQTVSSNNSYPKDFQTYKTTVENQPLQYPENNDAEYNKPFSVYELEQAL
EGLRGSTPGEDQIHYKMISMLPYDCKTTLLKAYNQLWGESKYPDSWRQSTVVPIYKGKGDRSNANNYRPIFLNSCLGKVM
ERLINNRLIHILESRELLSKYQYAFRKGKTTVDHLTEMEMIIREAFVKKEYAYAVFLDVTKAYDTTWRRLVLNRLSEWKI
GGKLLKFLETMLHRRNFKVLANGHLSSERPMQTGLCQGSVLSVTLFLIAIDTITSIMPSGIRILLYADDIVILATGINSK
AVQDQLQHALDLIQEWQGKTGFNISPGKSVLVVFRKHRKRKPKTKITLSLNNQIIPQKKYHKCLGVIFDETLQFDEHVEE
VKAACKQRIQILRAVAGRSWGADRTTLVKLYRATTVEKILYAAPIVSACNSNTLKKLETVHNAGLRTICGAFRTSPILSL
HVETGIPSINTLLKQRTAIHAVKNTDVCSTETINSSVGSSCCTTSSEESSGEMWGTNTVEFPETAQLRGQRVIDEMQLDL
PPVSRYTTPKIPPWERIKIPLDNGILNAAREGIPQVAMRNLFTSIKSTKYRIYNVIYTDGSKRENRCGYSVVCDEHIIRR
RIYGNSSIYAAECAALKEAFQWIVNNEHVGAYLICTDSLSAVSTLEKHKIKNKWHDEMIQLYRSIRETGNDIKIMWIPSH
IGIIGNEKADCEAKRALGDPYETVTSIDYKEIKTVIKNQIILQWQALWSATRDNKLREVKPSVKPYSSAFIGNRKDDVVL
ARIRIGHTKITHQYLMNKEPPPNCQFCNALLTVRHLVTDCPVLDEERQKLNISTSLQNVLEDNLDKAKNVIQYLKNIDMY
KQI
>Polinton-2_DBi_atp#DNA/Maverick 4774-5445  [Drosophila biarmipes]
MRLISQKQKIVVRNINDENEKNLPPRHSVLLPNTIRALIVGPSNCGKTNIMLSLIESPNGLKFENVYIFSKSLYQPKYEY
LEKLIKPIKGMGYHTFSHNDGVLDPSEAKNNSIMIFDDVACEKQDNIRSYFCMGRHKNIDSFLNSHIPKHLIRDNANFII
MFKQDDLNMRHIYRDHINTDMNYETFVKICQKCWEDKHGFLLISKDDEMDNGRYRKGFDQFIMI
>Nimb-2_AAe_pol#LINE/I-Nimb 2002-6060  [Aedes aegypti]
MTSERNMLNDGNNDMDRSNGNGTENDICDEGRSETVSWLGLDEEKVVSPLFRRGENSPRNESEDVTLPPVLCQLPRSSAN
YAATNEAQLRNGTTQASRIRNQATKLQPAILSWNIQGIQTGRQDLDLIIKDRKPLVICLQETMCSQRTQPRITGYTIYNR
PRPNCQRASGGVLIAVKNGIDNVEIEMETTLEAIKVNIGPPLNFSIINVYFPPGANLNISEVEALFAGPNPVLLVGDINA
HHPVWGSSFSNKRGKELEEVFDKNDLVILNSGEPTYYNQTTGKGSCIDVAVCSTHLAGNLEWEVLGDSYGSDHMPTLICN
PRETQENPTRPKWKIQEADWEQYQRIVDFPLIGDPEEQMKGITSGIISAAEQSIPRTKGAPSRRVVPWWNDEVHVAVKKR
RTALRRMKSAPSDERREELARDFKTARREARQVIKSAKEESWKQFVSSFNVHTSVKDMWNKYRSLQGRCRQACIGGIKYE
GREETTSVGIAEAIAEAFCSVSSDTSYSEHFRDVKQQTESNPFLMFDAPEEEYNKDFSMYELDEALESLKDSAPGEDNVH
YGMLSNLPLDCKYKLLETYNKLWQQSVYPVEWTKSIVIPIYKGKGDRTNPLNYRPIYLNSCVAKILEKMVNSRLIFILET
KKLLHKYQYGFRKAKSTTDHLVELEGTIREHLNKGHYAQAVFLDISKAYDTTWRRLILEKLKFWKIGGHLLRFIERSLAC
RTFRVLANGTLSSEKKMENGLCQGSVLSVTLFLVAINTIVEKLPGEVKCLIYADDVVIIYGGNDFEKNEEILQNALNTIS
DWQQRTGFNVSAEKCATVTFKTARARKVPLTSSLTINGSKIPKEKTFKCLGVWFDQSLRFREHVENIRASCQQRMKILKC
VASSSWGGDRETICKLYKATILEKMLYAAPLISSVSKDILKKLEVVHNAGMRAISGAFRSSPSESIRAEAGMPSFNTYVD
QRTALYAVKLKALDPQIIEETCETTSSEDESQETTTYESSSGEEWGSVKPVPELTIRERGGHLLQELEVQVPLLNIFTLP
SCAPWKRKKILVDKTLYTAMRRKQPEIMLRKLFNERRVTKYRVHKTLYTDGSKMSNKCGYSVVSDNMSIRKRIYDESSIY
GAESLAAKEAIMLVANEEGAGAYLICTDSLSVVTCLESSKVKSLWKDQMLEIYTQCLQNRKEVTFFWVPSHIGIEGNEKA
DREAKLALEQRIDTSIALDYKEMKKILNNKIIIKWQYEWGKIRENKLREVKDSVIPYKTRGKTRRENVVLTRIRIGHTVL
THKHLFERMAAPMCQWCNELLTVKHLLVECISLDEERKKVGLPISLREILADDEERIESVICYLKNINVYNSL
>Nimb-3_DR_pol#LINE/I-Nimb 1219-4992 [Danio rerio]
MWKYIMVLTILQWNARSLIANGQEFKKFIVDHENSPDIICVQETWLKSHLDFVINGYTSVRKDRDKSNGGGVATFIKQSI
GYRAVEITGEQEAVAVEICDGTQKVRIINYYNPCDKLSKDNLEHIQGNGNNKIVWCGDFNAHNTLWGSKKTDYNGLIIED
MLDWGGLVCINDGGYTRVELIKGKYSNLDLTLVSESLAGRCDWKVLKQNTIGSDHYPILSSIGIQIIRTVVERMPRWKFR
TADWENFKELCNNRLSEIDRCEDDVEVINSKLCEVLKSTAEEVIGRKKANGKKKAVPWWNEECSEVVSKRNNALKKVRKT
LNYNDFINYKRAQAIVRKIIRRAKKNYWREYCDSIGEDVNVSDIWGMIRKMAGKQRNNNIPTLTENNRLVISDMEKAEVL
AKNFARIHSNANLSEEIRRNREQILIRNPWLLENKGPSESTLDREFTLFELKKALAESKKTSPGKDEICNEMIKHLSDNS
LCIILKLFNKVWESGILPAEWKHGVIIPIAKPGKDQSQPNNYRPIALTSNICKLMERMVMSRLVYAIEKENFFAAYQSGF
RKGRNTMDSVICLESEIRKAQVNKEVLVGVFFDIEKAYDMMWREGLLIKLEKMEINGKMYNWIKNFLLKRTIQVRVGSAF
SQIYKVENGTPQGSVSSPILFNIMINDIFSKMELGIGRSLYADDGALWKRGRNVVHVERCLQNAVRTVQDWADEWGFRFS
TDKTQVICFSKKKVNPNININIYRQKIEQVSVIRYLGMWMDVKLNFNMHIQKIIDKCKKGINVMRCLAGAEWGACRFSLK
RIYNALVRSTIDYGCVVYSSAAKTQLLKIDAIQSQALRICCGALRTTPIIALQVEMGEMPLKIRRIKLKMRYWVSIKSQE
ERHPVKTVLKECWEYGHKKIDSFGWTVKDEAQNMGIRDINLAPAVPTSAIPPWLFHKPVVDLLLHEEKHKNNMLNEKEIQ
QYINQSYFNYLQIYTDGSKDPKDEKTAVAVYIPKFNIKISKRITDRLSVYTTEIVAILLALQWIEDVKPLRSVICSDSLS
VLNNLITGTSKARQDIMNEIMQNLFRIRQGGLFVSFLWIPGHMGVVGNEEADQLAKEALQHTQIEIKIKISKSEVKNIIA
KETGRMWQREWDNGEKGRHMHNIQGCVGGTRNKFGNRRNDVVITRLRAGHCLLNQYKFRIGKHETGCCDKCGKIETLEHV
ITECVAYDNQRYQLVQGLSIYGIKNLSFQTLLGNSSNQVEIIMQLINYLKETKLINRI
>Nimb-2_DR_gag#LINE/I-Nimb 6-1244 [Danio rerio]
MARRIDSKAVGNNWNVSGQENADGSDESGNEVGDMEVVCGNYEKWDMVKNNKRKKKRRNKSDESDSDRCSALEETVTVEY
KVFAKPVQEGDTFGGMNPIQLTKTLHKEIGIIKSAKILRNGSILIFCKDEKQQAKAIKVNKINGKKVECSKTNGKRYVKG
VVTGIPVNVSADEVKASITNANVVEAKRLRTNRNGSACDSLSVMVTFDEETLPKKILIGYMCYDVRLYIPPPLRCYKCQR
FGHIAAFCKGKQRCGKCSGEHEYGKCEEGAKLKCCNCGGDHSSAYRGCEVSKRQAEVQRVKAVQGISYAEALKKVPEIMT
VSKQNENRNKNTETCQKCEQLKAETLIVSKNDFVIFMAEIINCSAQTKSRNERIKIIIKSAEKYLDVKDLLWETVRDILN
EDTQSSQPGGGTS
>Polinton-2_HM_polb#DNA/Maverick 23050-28540 via tfasty with Polinton-3_HM_polb, 1 frameshift and 1 stopcodon. [Hydra magnipapillata]
MHFKVKNIEEKLDNESYYREILYFVNDNYKDEDFIEEIELNDQIQTPEEITHHINQKTQDSFLIETNKALSFADLFQNFL
IGYNIVTLCAKSTEDGYCKIIKRCYNSPVYYIKPLEGSINLQYIKSNNIRSVFNILENDSGWRIIRLSSFKVKTLSNLTE
KSMMKLRNYELAGYKRVSELSPEELMMRREYERKRKKKISELSPEELLKKRERERKRKKKVSELSPEEIMKRRECERKRE
KKYYTKNKNKILHKQGRKYIREENQDEWYGEWYRPHSLTQWNKHKSSSFKVLSYDQKRKMFLDYSILFENGLCFYSAFVI
SLLIRKWKVNTIKEWNTKVLEKNGQDFYSEENIMQFLIEDQNDSWIHALSLLKEKSKNLSFLELIDLCHSFAYENTFDRI
NIKIFSINKKNKNVRLLHPKMKSQYKSVLSELLKVVYESANITKEDQNPQREFLNEDERKEANERKKTVNTIKICLYEKN
QSFHAVSMLNERFSVIYNNHNxLYQCSECGLKYTSQIHKQECKGFYVADKFAYGKTRHFYEPQNQFINTSRNVFPFFITF
DCETSVQTSNLKETEHVKPLSDLSYYCHGIVIHCLSENLARECFGLDERNKVITQWIFYYENTIESLQANPLTLLPACFQ
ENVSLLHKTHRQILWQKLDANDENVEKYKSELRVYDLLILADTLVRFTYEKCLPRFQNLNLSEHEKCQVWQEENPLCSIC
RCPADKIKKSDVYSYKLTTMLEPEINLLNHNEIRFYNDKRVQVVNHIFKRVSKLELFMLKPSTQNYLITNKVEKIKNDLF
QISSLFYICCRWWEKFDRTLITNGFLSDYVRINSLDLVDHMKCLSQLVMNEQQINIWFENDPIELLEDSYFLIRIFQKCI
NEVNVHWKYERGMGIKDSITFLHLMSRLNHPSAHLWFHCMLEPLNREFEKKRTLKELIQDDKGRDDVLKECYGLLSCFED
YLVIDHDHFSGTVYGLAHDYCNKNLARYSSKLACPIFAHNASFDNRIMIVEGLKKILDVPLYSYGEDTEDKPFNAFLKCC
NMENLFVISKGVNKFNIICIGKHIKIVDTLKILNCSLDQASSMLSKKAQNQIIDSMLHYLLPFYPHINQLVDNEEFKNCF
IKKTLFPYSQISDKLLNIEYKNIPSIEIFAKNDLMKSKTLEDEIKKIKDSYETVSKLWNFLNLKNLKSLLHIYTVLDTVV
LGSVMIDFDERTFQFTQFRMLPHLSVFSYCSKLNSTMSQIQIQYPPSEEHERMIEKSVRGGMSSNGSQRYAIDTDYFENK
IEELGLKSNIKGCLFFLDENGQYGGAQLKPLPFQMKYSFDLECQTLEQVIEKYHRVNPDGFSTSALVHCQIKMEPEYQDK
VGGFSPMVEKDVIPLKDYSPTEIVAKRILKKNGQYTIEKDKTVKLLMKLSSHETCEFLDTLIWLTTCCGCVVEKIYKVLP
LWRYPLAEQMVRKNIEKRKEAVKNGDKVVDATAKLHTNGHYGFKSQNTAIKQTSQFINHEEKAFQNLIKHFQDIRLVLLQ
EEGLSEEKIKPLFPIHFQNLLYENGIFVNIEPERYKMDMFEKKICIDSYVTDQFTYDEYYKDFIFNKLIDVKTKTIMFSG
KHNEEFQDVFELLKSDINMYKDGLVFVSSEKSNLVNKQMRYVASQILSYAKLNVTRFAWELGEVLRNHNAEKHLVVTDTD
SGCFFITKKTDDKQEIFRSKVEEWIYFSKIGKQWMDYSNYPKTHEFYSSLYAKESDHFQNEVPPPSYIGQIFAMAPKCYS
AHIIKKKRNSxKGQDEHKNRAKGLPNYKLCYTHYINGFNTHRAEKIFRNMPNQLENELQPFLQNRLDLNFKNVTIKEHVI
QFLKKFTQKNYVFDDDLFTEIRDCYRLDPIREANLKVLPDIEKFCSDEHIQTLLEIEKNIIKSSERYNTMITFNREVLIP
LLFDLKKL
>I_Ele36_gag#LINE/I 544-1794  [Aedes aegypti]
MCELKTSYRIRLLLAKELKLVIGLKEARAVEAIREGRGARCLLRTNSLSTYQKLQKIVRLPDGTDVEVFPHATLNTIQGI
AYHPDTVDVDEESALDFLSSQGVKHVRRIKKRFGKDFRNTPLTILTFHGTVLPEYVYFGLMRVQIRKYYPNPMVCFNCGN
FMHTKKNCTQDKICLNCSQAHDMVEGVACPNAPFCKNCRGSHSCVSKECPVYAEEEKIIKLRIDQGITFGEARKQIKEQK
TQTTYASCVQHRMSADELGKDEIIQALRAELQTARSEFNQLKELYKKSIHQLQTHQQHCVLLQEVQQKQKQTASELKKQS
SSSQPAQITSESATQATHIPRKDQPSRSPPKDKRNKNAQSNKLNDQHTNSTWSTRIRSRSNKRSSQASPSEADPSLRGAK
TFVAQACDNDSGPHMQS
>I_Ele42_gag#LINE/I 306-1649  [Aedes aegypti]
MAGSSSAPPGGTAGHQSRSNLPQWMIGPDDIGQTVVLVLRRDTKSTDDFDHGLSQNSPLPHPFVVGSSIQQIIGVEAARS
INTTREGRGSRYLLRTKSRIISDKLMKITELCDGTRVEIVPHPTLNTVQGMVYEPDSLDVDEKLIEQELKSQGVLAVRRI
KKRVNGKLQNTPLLVLSISGTILPEFVYFGLLRIPIRKYYASPMMCFNCGFYGHSRRFCNQTAICLRCSTTHTVVEGEQC
NHDPKCLHCKGGHPTYSRDCPKYKEEEKIVRLKTDLGISNAEARRMYNESNRTDSFSKVVQDEVQQELAKKDQLIASLQK
QVAALAKEIGLLKKSQRSFAHSLSPVPQNQKSSATQSKQIKPTTSTTHQQPTQNTSNRISRRDKIASSTPCKRTTERSNE
KMDYDILTRSRSGKRHFEISPTDSGKSSGKRSLAPPGSKSPTSIEVDE
>Polinton-2_DK_int#DNA/Maverick 5823-6668 (reverse) [Drosophila kikkawai]
MKGIDDLFQVDLVEMGKYSSTNKGYRYLLTVVDAFSKFAWGEAIKSKTGKDVTEAMEKVFKTGGRVPKNLQSDDGKEFFN
SHFKALMKRYKINHYSTFSTLKASIVERFNRTLKELMWKEFSFNGTYKWIDMYKELINNYNNTTHRTIKMAPIDVNSENE
NHILKTVYNNIKMFTGSKLKIGDNVRISKYKGVFEKSYTPNWSTEIFKIIKVQNTNPVTYLLEDLNSNPIKGGFYKEELK
KTSFPDEYLVEKVLKRKGNRALVRWLNFPKSADSWIEKSEIL
>Loner_Ele3_pol#LINE/I 1807-5487 [Aedes aegypti]
MARYANQLTDHVSVLQWNCRSVMANINSLNLLISETNCDIFALCETWLIPELTVDLIDFNIIRQDRSDGYGGVLIGIKKC
HSFYRIGVSNKSKIEVIACHVNMKGKXFSLVSFYIPPKVTFSYNDLETILDTIPAPWVIVGDFNCHSTAWGSDHDEKRAM
PIHDMLDCYNLCILNTGNVTRIAGPQKKDAVLDLSFCSSSMVYDCSWIVIDNPHGSDHLPIVISIHNDNQRMREYVNIEY
DLTKNIDWKKYSSIISEALENLADLCLEDEYDFIVNLIIDSAIKAQNKPIPNKKIVNRIPNPWWDKECNTVVKEKSAAFK
VYRKVRSRQSYEKYISLERKFKNLVRAKKKSYWRKFVGELSHETSMTALWKAAKNMRNKSSVNEDKEYSHEWIKKFAKKI
CPDIVSENQICFDTSEDSVPMFTMIEFSLALLSGRNNSPGKDGIKFDLLKHLPDVAKKRLLNLFNWFLDHNVIPNDWRKV
KVIAVQKPGKPPSDHNSYRPISMLSCIRKLMEKMILNRLDNWAESNKLISETQFGFRKGKGTTDCLGLLTTEIDIAFGSK
QQMTSVFLDIKGAFDSVSLGILTQKLHRKGLSPKLNNFVNNLLREKHMYFSSGSISEYRVSYMGLPQGSCLSPLLYNIYV
SEIDNCLAEGCTLRQLADDCVISVIGKDREDMQAPLQATLDSLSSWATDLGIEFSPEKTEMVVFSKKHHPAKFELQLSGK
KINQSLSYKYLGIWLDSKCTWKKHVQYIKSKCEQRINFIRSITGSWWGAHPEDLIRLYKTTVRSVIEYGSFCFYPAARTH
ILVLERIQYRCLRLALGSMNSTHTKSLEVLAGVPPLMIRFYELGSRFLIRSEIMNPIIIANFEKLLQLMVQSRRMPLYYW
HMSEDISPAIIDSEQLNMNFLQLNNDKVTYDISMKQEINNIPDYLRSKIIPSIFSSKYGRLSSDKCFYTDGSSIDNSVGY
GVFNENVSTYHQLKNPCSVFVAELAAIYNALIIILNLSVGSYYIFSDSLSSIEALKSIKPQNATYFIIEIRKLLNTLTMR
SFSITFIWIPSHCLINGNEKADILAKKGAIVGEIFERKIDFREFFQTCRRKAIAEWQRSWDEGSMGRYLYGLAPKISKKS
WFKDYNLTRDFIKVISRLMSNHYRSKAHLKRIGLSDTNHCDCGEGFEDIEHVVWVCSKYEVKRQELIDSLPVLWKPPNAT
VRDALFSRNPNFLNPIYKFLKAIDFPI
>CR1-24_BF_pol#LINE/CR1-Zenon 1-2874 fragment [Branchiostoma floridae]
MFQGVIAVVLTTVMFTIGSSNVRSLNPHTASGHYKTSELEEILRTNKISVMGITETWLHHGILLNIPWYSTIHRKDRQGK
TGGGVAILISDTLPSKRRVDLETCDSNWEDVWVEVTVAGNKVLVSCVYRPPVAPDSFFDQFETSISKVATDKGTIVITGD
FNCHHTDWGDTSTDNNALNLVDIIDRYGLYQCQHQPTRCTPTCQSTLDLMILSDPSRIDDMSTLAPVGNSDHAVITCRLN
LSIPTVHPTRKHVWYYNRADFDVFRSELSKINWNSCMHGSIDERWNSWKAKFLNVAKNTIPNKNIKATAPRKPWVTSELL
EAIQHKTELYKTFTSSPSNENWKSYTKAKNRLTKDLRQAEAGYYAAVSERLKTAEGARQFWSVLKQATGKGKSAIPALSA
NGSVVAKDKDKAELLNDIFVNVTSEATHPDCTRRLPRFTNKELNTIVVSVEEVERTLQTLQSNKAPGPDGISNRLLKEAA
PIICASLCELFNFSLSTGQFPLEWKRCNISPVYKKGDRTNPSNYRPIALLSTVPKVLERLVHNHLYAYLMNNNLINVNQS
GFKKGDGTVLQLMRLVDEWAKSIDDPNIACTAAVFLDVRRAFDTVWHDGLTYKLSRYGVKGALNMWVADYLTGRQQRVVI
NGVASSWGHTKAGVPQGSILGPLLFLVYINDIKDLPCSSNINCFADDTSLSKSGPTAQEVASTTNTDLQHVSTWFVDWGL
ELHPDKCKVMCIKSPRSKVQLPTIYIAGQIVEQVPFYTHLGTTIHQTLRWTEHVQTTSNKARRTLGFLWKLRGKLSREAL
EMAYNTMVRPKLEYASVLLGDLASSSSKMLERVHYQAACLVTGAARRTPSSVVMQELGWDSLATRRHSQSMVLMYKLVNG
LVPPHLQPLIPTTRGEHRTTRLRLRNSTHLHIPRCRTQTYQSSFIPHASRLWNDLPQAIKQAGSLRLFKRRLANWTD
>CR1-23_BF_pol#LINE/CR1-Zenon 1-2478 fragment [Branchiostoma floridae]
RADFDNFRLELGKANWTSCMSGSVNARWNSWKDKFLKIAKNTIPNKTVKVNHRSHKPWITTDILDMIRQKTDLYREYKSS
PTQQNWTNYTRCKNTLTSELRRAEREYYNSIGDNIKSADDCKLLWSVLKNATGKGRMGIPSLLYQGRTLDKDCEKAELLN
NIFVQTTMDSKHPDYMKRLPLYTDNELSFIQLSTEEVYDVLLGLPTNKAPGPDGITNRLLREAAPAISASLCELFNFSLA
TGHFPTEWKQCNISPVHKKGDRTEPSNYRPIALLQTIAKVLERLVYNRLYTFLTDNNLMNPKQSGFKQGDGTVLQLLRLT
DDWAKSIDDPNIACTAAVFLDVKRAFDTVWHDGLIYKLTRYGIHGSLLAWFTNYLSGRQQRVVINGTASTWGSPTAGVPQ
GSILGPLLFAIYLNDIKDVPTISSLNCFADDTSMYNSGHTAEEVASTTNADLCLVSDWFSDWGLELHPDKCKVMCIKAYQ
SKVQLPPIYLAGQILEQVTSYTHLGVTMHYTLRWKEHAETVSSKSKKVLGLLSKLQRKLSREALELAYNTLVRTKLEYAS
ILFSNISVTASKTMERVQYHAGRLVSGAMARTPHDKLLEELEWDSLATRRDYNRLLTMQKLVTGSVPAHLQPLVPTTRES
RRRLHLRLRNDTHLQVPYCRTTTYKNSFVPYSTRLWNSLPMEVKEATSYNQFKKKCRDHMLSSRQHQKFRRLGNRQSNIL
TTRLRLGWCQLNSTLAKFNITTRSCACGATSETVAHFLLHCPLHTAARQTLASSVLQLVGQSLSTGVLLNGSPGQNSATN
QKLSDALHSFLTSTNRFTAPSICSS
>Polinton-2_SP_pro#DNA/Maverick 6078-6593 [Strongylocentrotus purpuratus]
MDTKQLHHVGQSDSKLKSTFIGVFPSDQLPFIETYPAALIANIDTHDQDGSHWVAIYLTKTKRAEFFDSFGRHPSMCSRH
FKPFLETWSDAWTYNQRSMQSFWSAVCGQYCLYYLLRRVRGNSMASIVSTFNQSRVENDKKVHAFIQRHSPTNNTPIHDP
TFILNQIATSFN
>Cre-1_HM_pol#LINE/CRE-II 833-3913 [Hydra magnipapillata]
MNMVSICKRCDRSFTTLKGLNIHKGQCKIFVSNTNKQINNVVNNELTTPNKNKVEINTILNCDEISVEHYSTNTPYLPKI
NICESIIDPNDYLWGHMPFSFLLNHVNTIYDEIVFYHKNLFKVPSGKGGKMFIEELTFWLKQFNNRTKLNGIAMKCFMIV
PSLMLQKPSIRSKAKEHAECLVRRITLWRNGNFSELMREIRYIQSKINTSKKKRTFEDISRIFAKLMMEGKVAAALKVLD
RESSGILQCSESVLKELKSKHPDETPVQDNCLLYGPLQNTPECLFDSIDEISIFNSALQTKGSAGPSGMDADLYRRVLCS
KCFGPSCKTLREEIATFTKNIATKSYQPDIVQPYIACRLIPLDKNPGIRPIGIGEVLRRIVGKTISHHCQKEIKEAAGPL
QTCAGHGAGAEAAIHAMQKIFHQEDTDGVLLIDARNAFNCLNRSVALHNIQITCPILAMYLVNTYRKPAKLFIYGGETIF
SKEGTTQGDPLAMPWYSLSTVTIINTLKLVIPDVKQVWLADDATAAGKLQSLKKWYKCLEDVGGLYGYYVNQSKCWLIVK
SDNQAEEAKLIFGNSINITTQGKRHLGAALGSEAYKKVYCEDLVSKWSKELNNLCEIATTQPQAAYSAFIKGYRSKFTYF
LRTIEAFENFVTPVEKILSEKLLPVLFGTDCSIIKENRDLLALNPSEGGLGICNLITEAKEQHTASKKITNLHIKSILDQ
SDVMKEKDDFGKTFSEIKTKTNMDKSKKKKEEVKKIHAGLPENLKLLVEQACDKGASSWLNTLPIKEQHLDLNKEEFKDA
LRLRYNVPLANLPSYCACGEKFDELHAMSCKKGGFVCNRHDNIRDLLTVCLNKVCTDVQAEPHLIPLTNEKFNFKTANTN
DEARLDIKAKGFWRKGETAFFDVRVTHVNSKSSKKQPTKHIFRRHEDAKKREYLERVLEVEHGTFTPLIFGTNGGFGDEC
KRFTALLAQKLSLKMGERYGAVINWLRTRLSMEITRASLLCLRGSRTPFRHYNTDDVGLENVQCGLI
>CR1-53_BF_gag#LINE/CR1-Zenon 146-919  [Branchiostoma floridae]
MPGRKQSKRKRRPTSGDSVAHDSEDSSMATQVSLSSIAAHLSEFASKTSASFDKLNASIYHLGEDMKSLRQEVVSLQQSV
SFAHDEIDALKQETSTKNSGLEQRVIALEEKLLLSELYSKKQNLLLWGVQAEEEEDVVEKTYKFMEDNLKMTNVKSIAFV
NVHRLPKMRGNPIIAKFVSMADRDLVLRHAYRLQPKSGIGVSVHLPVPIQKAKERLKPAFYDARSKGLKPKFKLVGATMH
LCVAGGKKFKTPEDYFN
>CR1-2_HM_pol#LINE/CR1-Zenon 559-3495  [Hydra magnipapillata]
MLRVKFFNKFKMTKVTKTIKHKKPSSSPSSLNLSFTNIRGLRSNFSSVESYLLQSSPDLLALCETNLSSAVSSCDLSVDG
YLPLIRKDSNSHMLGLGIYIRKNSPICRETRFESTDYSFMCFRLAPLHSITFLFVLYRSPSSQDCTLLDVISDQIDQALS
LYPSANIVVVGDFNVHHTEWLGSSVSDSAGIKAHNFCLSQSLTQIVNFPTRFPDNPNHLPSLLDLCLVSDPSQCSVSPHS
PLGASDHGLISLKLLSHSSLPSESPYHRTSYNYLKADWDSFRDFLRDGPWVEIFRLPVDKCASYITSWIQAGMESFIPSR
RFQVKPHSSPWFSSHCAAAIANRNHYFHIYQQNNSPENRRLFTTARNHCKKVLSNAKARYSQVMKSRISSQKLGSRDFWR
IFNSINNKGKSVIPPLLYGSDFVTSPKDKAELFAKNFSSISSLDSTSCVLPDIAVKQVDPLLDIRITPASVSKVISCLDS
STACGPDNIPVIVLQKCSPELSSILSKLFNKCLSESCFPACWKAASVIPIFKNSGERSDSSNYRPISLLPIISKVFESLI
NKHLISHLESHNLLSDHQYGFRSSRSTADLLSVITDRFYRALDKGGEVKAIALDISKAFDKVWHAGLLHKLSSYGVSGNI
FKIIESFLSNRSIKVVLDGQHSSSYSVTSGVPQGSILGPILFLIYINDLPDILTSKVALFADDTTIYSCHDKKPTLSDCL
EGASELEKDLTSATAWGSQWLVNFNSDKTQFFSANRYRNNLDLPIFMNGNVLDESPTLHLLGLTLTSDLSWKPYIKSVAK
LASAKVASLYRARHFLTLDSILYLYKSQIRPCMEYCCHIWGGSSNDALSLLDKVQKRIVNIVGPALAANLQPLSHRRNVA
SLSLFYKYYNGHCSKELASLVPSTKIHSRVTRHSIKSHPFSVTVPKCSKNSYSSSFFPRTSVLWNSLPSSCFPDSYNLQS
FKSSVNRYLALQIXSFLFQ
>T1_pol#LINE/CR1 1487-4414 [Anopheles genus]
LTINRPFVIYYQNVRGLRTKYNELRLSANESGFEMLALTETWLNESIPSNMVLDSDSYNIYRCDRSRLNNERSRGGGVLL
ACSSRYPSVALNMNQPTLEALCIRVSFPKFRLYVGIVYVPPYLSSDRNYFESLSAFIXDAYMHMKPNDHLILLGDFNQPA
LGWSPAAAVRSDSSLPMRHYVPHISLNSSSSCFLDVLNLHELYQLNGVHNHSNHYLDLVLSNSAAAACSSVYPASSLLLP
QDAHHPALEIALPSSLFRASRVRNELPSAPNSLSVRYNFRLTDYRKLNSILSRADWSFFYQCTSVDEAVQSFNALLTSAL
LSCTPIFRSPPNPPWSNRTLRNLKKDRMKYLRRYRLNRSAFNFRLFKYAASAHRLYNRARFEAYSSRLQSRFRSDPASFW
QFVRIRRGCNTLPNEMVLDSRTASTPVEICELFSAHFSQMFEPPVSDPNLIEGGLLYTPENLINLSDISVSSETVVQVLF
GLKRSFTPGPDGIPASVLINCKDVLAPHLAKIFNLSLSLGVFPALWKSCWLFPVHKKGCRSIVSNYRGITQTCATAKTFE
LCIFPTILHSCSSAISPKQHGFMPGRSTSTNLMSFVTNIFRSFEAGTQLDAIYTDFHAAFDSLPHSLLLAKLSKLGFGDG
IISWLSSYLSNRSCRVKTGSYLSEEFFCTSGVPQGCVLSPLLFSLFINDVCNVLPPDGHLLYADDIKIFLPVSSSSDCMS
LQHYLNAFVHWCSSNLLRLCPDKCSVISFSHSLSPISFNYTLSNSSLSRVLSIRDLGIILDSRLNFKLQLDEVLLKANRT
LGFILRFTSIFRDQSFLRNLYYALVRPLLEYASIIWNPPTIDGCSRIESIQRLFTRVAFRRLFGAASLPPYETRLQLFNL
HSLSFRRQVSQACFIGGLLLSDTDAPDLLSSISLYVPSRSLRPRDPLSIETRHTLYTFNDPILSCFRLFNHFYYLFDFDS
SLNSFRNRIFSSNSL
>CR1-4_BF_pol#LINE/CR1-Zenon 1256-4456  [Branchiostoma floridae]
MKSLSVCHANVRSLPANDFVKLHELESVALDVGFDVIALTETWCDETIPDSDISLSSYQSPLRRDRNRHGGGVALYASNN
LPCKRRSDLETDGSETIWCEVKLKNWTVYICTCYRPPGQNVDERTAFIDHLQRAVDTIVDNGPSQQNAIVLLGDFNGNSD
NAAGMINRFVSDNNFSQLITEPTRSTDTSASVLDLIITDSPGMFVDHGILPPLANCDHAVTYGTMSVKVPKVNAYKRTMY
DFTNVDYEELNSKILEVDWNSVISDHIPDVNASAEAFMSTLTDVIKTVIPSKVVTIRPRDKPWMTCEIRRLLRRKRRLYG
RYKKTNNSSLFCAFKRVRNNCIDLIRKAKRNHRHSLCLDLANPTSNPKKWWSVSKEIFLGKADRVLPSLLENGNVMTDDK
AKADILNNYFASQTYLNTDGASFPNFVPRTELALNSINCCPANVYSVLSNLNINKATGPDGLSNRLLKCIAPSIAQPLSH
LFNVSLEYGCFPSIWKFSNVVPVYKKGDKQAKENYRPISLLCCVSKVFERIVYAPLSAYLHGNNLLTDRNSGFTPGDSTV
NSLTHLVHKLHKAVDQGFEVRTVFLDISKAFDKVWHDGLLFKLSQLGISGSLLQWIQSYLTNRKQRVVINGACSDWLPID
AGVPQGSLLGPLLFLVFINDLVDNLQTDANLFADDTSLVEVVLDPLVSANRLNHDLRMVGEWSDQWLVTFNPLKTELMTF
SMKRVKVYHPPLVFKGVVLKEVDSHKHLGLNLKRDLSWSYHVSTLITKAMKRINLLKRISYFVPRGTLETLYVTMIRPLL
EYADIVWCGLLGKDCDLLESVQMAAARVCTGAMRGTKHESLLAEVAWDTLADRRKKHQLIQFWKIMNGLAPLYLHNIIPP
RICDTVPYNLRANQNLTSIACKTEKYKRSFLPSTVHLWNELPTNAKAVLSINTFKKELDSLFNKPTKYSHFSYGQGRSAV
HLTRLRLNFSQLNYHLFQHHCIDYPTCKCGYHCETTEHYLLHCTLYTSQRSSLLSAVSNIIVDLKHLNDTTLCTLLLSGS
TSLSHQQNCNIFDLVITYIHCTGRFS
>Polinton-2_TC_pro#DNA/Maverick 1834-2235 [Tribolium castaneum]
MVSEKKLPVKLPRHALTNIEIIKFARLLQIPNFRGVYMRNKLPKIIHKNETGIINLDEEKNSGTHWTAYVKNKNNILYFD
SMGNLKPPTEIINYFKSDNDGNNITYNYDGYQKMGSYNCGQLCLKFLYRHTCKL
>CR1-8_BF_pol#LINE/CR1-Zenon 714-3560  [Branchiostoma floridae]
MFTIATTNVRSLNPFTETGHQKITELESHLRTNNISVMGLTETWFNENILSNDISIPGYNIMHRKDRLGRTGGGVALLVS
DTLTSRRRSDLESCDNTWEDLWIEIRVAGQKILASCVYRPPSAPDSFYDQLENSLSKAASEKGLTVITGDFNCHHTEWGD
SSTDNHALQLADIIERYGLHQSQHQPTRSTLTRQSTLDLIILSDPSRINEMFTLAPVGNSDHATVICKLGISVSTKHIKK
HVWYYNRADFDRFRAELGKVNWNNCMCGPTIDEKWNSWKVKFLNIAKNIVPNKTKKVVTARKPWITTELLEAISQKTELY
NTFKCSPTPENWRNYTQTKNRLTKDLRRAEAEYYSTVSDRLKTAEGARAFWSVLKQATGKSKSGIPALSVNGIVLDKDKD
KAETLNDVFVRVTKEATHPNFTSRLPKFTDEVLSTIHVSEEEVLGVLQGLHPNKAPGPDGITNRLLKEGAPAISASLCQL
FNLSLATGQIPKDWKQSNVSAIYKKGDRTDPSNYRPIALLPTVAKVLERVVHNRLYTYLTVNNLLNVNQSGFKKGDGTVL
QLLRLVDNWAKSIDDSNVSCTAAVFLDVRRAFDTVWHDGLTYKLSRYGVSGPLISWFNHYLTGRQQRVVINGATSSWRYT
YAGVPQGSILGPLLFLVYINDIKDLPCTSDINSFADDTSLSNSGPTAEQVASTTNSDLQLVSDWFDVWGLELHPGKCKVI
CIKSARSRVVLPPIYISGQLIEQVPFYSHLGVTLHQALGWNEHAQNTSSKARKVLGYLWRLRGKLSKEALELAYLTLVRP
RLEYASILFTNMSVAASKVLERVQYHAGRLVTGAAPRTPYSDVLQELGWDRLSTRRDYHRLVIMYKLVTGTVPPHLQPLI
PQTRQTQTQLRLRNSSHLHIPRCRTTTYSNSFIPYTSRLWNNLPNHITDSTTFPQFKARCRSHLLSGF
>EhRLE2_pol#LINE/Dong-R4 gi|34392537|dbj|BAC82596.1| reverse transcriptase [Entamoeba histolytica]
MSTTGKKEIRKEIGREEQPSEEDTKEFLNKIYNRGKRIKKENERIKEIIEESNRRNLKRIIITKENIENVITRIPSWKAP
GIENMHGYYWKRLESVRDRLVIVFNEWLDTPENIPIEMLTGRTILIHKGGDSKKAENYRPITCLNVIMKIFTSIINRKIE
EQLANNEEKYQINKSQYGNKKRSLAAKEVNINSLLERNEREVQKKRYLESFYDIRKAYDTVNDEWLENVLRYFKIPFQIT
ELIKSMSSRWRIRIGYRYKEEIREVKIKNGILQGDSISPLLFILQMNIISDVIDRTNEKRLKVKHVLYMDDIKVTSETKK
GMEMVHKNIIETIEVIGMEVNVNKSGVMKKGNIGIQDNMKDIPIVDSEHQYKYLGVYQFTRNDDVGCIERISKSIEEGIK
ENNKGNDSSMNYINRINTEIIPKFTYSASVVKLPIMKLIEIDKMIRIEVKEGKIIGAGMCTSRLYVNRNKMGDGLKSIRD
EYAIKLIRSILYYTWKRGNRIGDMIGINENKNRMLNRLYKSMLKKRINKEEFRKIVEEERGKRDKNRIIKYVREKFQEDY
INKWRNKKVNSEILKGFEDKTMEQKKTIKVWKGINVIRKAYIQIKKMEEKARNVGVRKALMKHDMRYAICPICNKIATIN
HILLNCIVTKKTQMNKHDRIGEYIWRSLKIKYQLYENKEKMKMREEENTKKLIIRKEELGKNERRIEKDKILIVWNHEVV
NRSEDKFHKRIDIYVRDLNKKEAMIIDMTIVRDKNISKAFTDKINMYSKLHEHIRKIERLVRVIVIPVVITVSGLINKET
VILLNAEGIEIPREIMTREIVISNMKDLMRYCGDHSGEYSNVEIPEEEDSQESEGREEILT
>Ag-I-2_pol#LINE/I 1702-5316 [Anopheles gambiae]
ISPYIISWNIRGMNKNIDELKILINKHNPSFIALQETNHKPNTLHHSPLNNYTWRFHNKPTLQHSVCLGVRKNISHTQLN
ISSDLPLIAISTKVPFDITIVSAYFPNKMHPTNELSLYLTQTLNQINGPILLVGDLNASNTYWSNTRTNTRGKILHNLFD
LNNLQVIKNSSPTRISPSDGTGSCIDHCVVSSCSTEQFSLVVEEDLHGSDHFPILIFDKHGDTRPKLRPRWKYNEADWSS
YRFLIDRAIDGSALLSVDSFCSIILMAAELSIPRTSGKIPKKSVPWWNDSVEKAITARRKALRKLRKASTISNNPNTSYL
ALKYQEANQIAKNEIEKAKKVSWEKFVTSIDPSLSCKEVWSMVKNLTGNSQFSFPTLLNNNEPITSPSCIAEHFAQHFYE
ASATSKYSATFIQRHKSKTISSISFVDTNNQSYNKPFSTEELIWALRKCRGNSAGIDDIGYPLLKQLPERALHCLLEIYN
NIWRTGEIPNNWKTSLIVPIPKAEKDSLSVDSYRPISLLCCMSKVLERLVNRRLIQELESRNLLSDKQHAYRIGRGTETY
FACLENVLTEAKNKNYHTDCAVVDLSKAFDRTWRPAILEQLKKWGFGGSLPRFIKNFLTDRTCKVLIGSYTSNIKVLENG
VPQGAILSPTLFLISMESLLQTIPTNIDTFIYADDIILITSDKSETKNRTKLQKALNKLHHWCCLTGHDLSTTKSKILHI
CNKSHKRTLKPIKIKYDIIPNARAVKILGVIIDSRLKFRQHLLYVKKMIKSRLNILHMLGCGNKRSARRTLLTIFNSWFV
PKLLYGIEFITMGDANFGCKLAPMYHSALKKITGAFITSPNTAVLCESGQLPLDHVVVLKIVNLAGRLIEKGIEANSFVD
RANKVLKQLTGHSMPNIARLTSCSTRPWYDKIPTIDWTLQKLSNHEQQIVQNYQMLIANKYKIYNKIYTDGSVYNSSAGC
GITSPNARCSIKLPENTSIFSAEAIAIMIATEEATVNDRPNVIFTDSASVLKALEKGSLRNPYIQTIESLSKDRSIEFCW
IPGHKGIAGNEVADRLANEGRMIKDHVDGTISRSDASLWWKGVINQSWQNIWNKSPITNLKKIKQTTAPWNDPLDHSDQR
VVTRLRIGHTRLTHTYKLKKESPLICPFCGCDTTVEHILINCFGYSAERQKHRLGDHLDIVLSNNYKEIEKLLNFLKETN
LYKQV
>Ag-I-2_gag#LINE/I 308-1606 [Anopheles gambiae]
MGGPGTAWGEYPTTPPNIRGRQAPIWMDGEDRLGELLYLVLSPNEKSVLPKNPFIIEKSLTNHAGNIEPCKPIDKGSKYL
VKTRSRAQFEKLQSLTKLIDGTSVNIIAHPYLNSVQCVIVCNSLEGLSDDDILSEMKEQKVVSVKRFLRKENGEIKPTNS
FLLKIDAVQVPHEIRVGCLVVKTRTYYPRPMICTQCLIIGHTKNRCNHETCCANCGEKEHGVCSSPIKCKNCSGSHVSLS
RSCPTYIDEQMIIKIKIDNSISYTEAKSVFENKRAHSVNERIQNAQQESVKDQIIADLKKKVAQLEEKMDIFLKANDKLQ
KDNDKLKHMYLQTIKPKTNTNTTSEPIDSSDNENTAPTRSHAHIVNLASNLNTQIDTDNGDNAYDKPIQKRKVDSYSSTD
EQHSDKTIPNTDENSSEFVKPKTTRRPKNRKTD
>I-1_AC_pol#LINE/I 2-4351 [Aplysia californica]
GANDEPARWCSRQLLPKDVSLPTDKPRRQLQNASTHLEHQDLNNPPGFFLGGQHNPAWLARLLILAGDVEQNPGPRWPCG
VCGDSVPAKAVSARCQECLLWIHLQCSDLTRQQMLSLPSTKKGRRITAEWTCPSCTIGAAQHPLRAATQPVYTPPTQLDP
NRPMTRQRHVRQLRRKNRCTDSNARNHERTRCMKKENNRALNILQWNIRGLRSAKIELLRHIDTNHPDIICLQETWLSRN
IDICVPGYSIERSDRDDGNNGGGVATLIKDGITYHRFHDGVVANPDSTTEFVGTLLYLPGRTLKVVNLYIPPRHKGNFVP
HVLKTDANTIIVGDFNCHHPSWDPYVDQCATGTEIDDWALDNDMIALNDGCETRIDPSSMLKSVPDISFCHVSQVAYVSW
KTSDTLVSDHKAIEIKLCRHSAPTRRSKAKWSFKKADWSLFNAHMETETLANDMPNMTDATKLNTCLTEAILKAAKQSIP
KGARKLPKPFWNEEADKLIEEKVQLRKKAMATKTREDIGNYQEASKRTTSRLNEMKRDCWRNFTSEMSLSTDPQQVFRVI
NAISGKKTPSTGSALTENNKTLKGDRSKAEAFCREYASVSRLKLDKADKHRHYQLNEKLKLLPIDQNTGYDSLLTMAELT
VCIGKLKNGKSPGLDGVTNEMIKHLGPIANSALLRLFNLSWEMAIVPNSWRRAKIIPIPKKNKPAGKIGSYRPISLTSCL
AKLMETLVKNRLMYFLESNNLLSNNQSGFRKLRSTEDQVLCLTQHISDGFQARPKMKRTVLALVDFSRAFDKVWRTRLME
KMIEKSTPSRITQWIGSFLRDRYACVEHGNATSRLRRFEQGVPQGSVLSPTLFLVFIDDIEAGLPETVKTGLYADDYTIY
ATNEDINQAENSVQAAINLLEQWAKQNKMEISTEKTECTLFTTSTHEAKRKPALSLKGAPITFNSNPTLLGVTLDRTLSS
NAHIQNLELKLSSRLRPLKALTGTTWGASRECIKPIYYATCRSAIDYCAPAYMPLAKPSNLQKLERKQNEAARIITGCSR
DTRVDSLLIEADILPLRHRADALTAISFEKSMRLPTTNQRKASATKSVPTRTGKSNWRKHAQNLVAETELDTYPREELVV
LPPTQPWKAASYNVTFSTDLVADCKRANEPAVRKAAAEATIRSLPLPDVEVWTDGSAEHGTEYGGSGILIKTGDTELDQR
VPAGRYCSSYRAELVALDTALDMLVALHTAGSLPNSARIHVYTDSRSAVMRLSYGPTNQSEKVACSIWQHLHTLCQRSEC
SIHLQWIPGHAGLAGNEEVDSIAKEATALTQIDTPIDFSTAKAVIHRSTRAKWKREAKPKLPFAQPPSFQLEASLRRQDR
RLLSQMRTGGKSPKLRSYLHKIAPADNPDPSCRACKEEDETMDHVFLRCPASYRARTRLLGHFSNPLSALFKDPRASVEF
LRAVGIADRL
>I-1_DWi_pol#LINE/I 1296-4997  [Drosophila willistoni]
MTLTILQWNLNGYSNNYNELLILINRFKPKIISLQETHLTNLSQVPIPTNFSMHHTTCSTXKGGVAILVHKSIQHKLISV
GQSFDAITVEIHSAKKFYIVAAYIPPNQKFSLVDLETAFPNTSTPTLYTGDFNSWNSYWGSPSSNRRGKILAKFIHDHNN
IILNNGQPTHFSTHNTFTHIDLAFCSAELKINCDFSISDTLEGSDHFPITIKMFSNDQYKTHTRYTQRFLTKQANWDKFE
RLTDELNNITTISPNVNKEASNINKIILQSAYKSIPLCKPPKRQYNVPWWNKEIANSREKKILAWKALNRDMTTENIIRY
KKLNAQLRRLIRESKARSVHEFTSDISPRSTTETIWNKIRRLNGLHKSSQIHCMQDTTTNTLNSDAGEIATSFANHWSRQ
SEDQLFTSAFVEAKQKTNTTHTYSPPHNSAKFMEQEIGFLEFASALNSLKGHTPGFDKINYSMIQHVSTPLKTRIVTLFN
RILQTHIPQIYKISTIIPVLKPGQDKTTIEAYRPISLNSCIGKVLDKIISKRLWWFVTTNKLLNSHQLGFQKGRSTADCL
LLVDALISRSLSAKRHISLVSLDFAKAFDKVGVHTIINQLKKWQCGPTIIKFIKNFMANRQIRVCVNKNYSNCKPLRNGI
PQGSPLSVILFLTAFNSLSELIARHKNINFTAYADDYNILVDLNKEKQSTIKLDNLFENIDTWCQTSGASLSLTKCKHLH
ICRKQNCHPQVSSQSATIENVKELKLLGLSFSAKYKWHSHIKNLQKSLNKSLNILKCLSSPKFNCHTYTLVQIVKSICLS
KIDYGLPIYGRAPKTTIKPIKTALNTALRVALGAFRSTPINNLYFEANIPTIENRTQQLLTKVINPILNSYDTPLKEIIN
KINKNNRKAYRDSTLQKCINSCFNLGITPTPIGKTPKSDPPWFINTNTIDLHLNVFKKGHTSNEIYTKQFAEIKLKLNDH
TFIYTDGSLKNCITGYSITTENKTLKLGILPLYSSVFSAEIIAIFDATIIATKIKGKVCICSDSLSAIEAIQNINNNTYY
PDIIRKTLIKQQPKIMLLWVPSHVGIKGNEFADEAAKTATISPLFTHPNYNKTDINRHIKNHFSNLNTLLIQQTSCWYQE
INRHNKYNVDDYLKKLEICQIARKTQIKLIRLRLGHTRLTHEHRFLQNNPNHCKFCNTNSIMNIEHILNTCTVFQSFRNH
IPNQNLIALLSNPTPENLKEIIKYLNLTNIMNLL
>I-1_DK_pol#LINE/I 460-4113  [Drosophila kikkawai]
MSLILIQWNIQGYTNNYNNLLILIKKYSPHIIALQETHIQYTNNIPTPINYILLTNTATNRFGGVSLLVHKSIQYSIVNI
PNDLEALAIHIKSMKNMHIKTAYIAPNKTVTNQMLEDILHNNQTPSLVVGDFNGWHPAWGSPKTNSRGKTIQKFIDNTQL
ILLNDKSPTHFSTHNTYTHIDLSLCSATLAPHAKWEILDDLHGSDHFPIVVSLFPPNKLNKFSKPFFKLKKANWLQYETL
THKNNDTFPTSTNVNKEAAQINKIILHSANISIPQTSANTKPYKVPWWNKELAQLKKEKQLAWKALNRNINFTNVINYRR
LNAKYRFEIKRSKSEASSSFTSTIHPETPSSKIWSNIRRFCGLNPMKQIHAILNPKNNTATTDTLEIANSFSQHFSELSN
DSTFSDEFRNNKYKITTANYRPTSTAQTIEENITYLELIAALQTLKGSTPGLNRISYEMISKSSHTTKNRIKNLFNQIFD
SHIPQAYKISLVIPILKPKSDKTNISSYRPISLNSCLAKTLDKIIAKRLWWFVTHNKLLNENQFGFKKGKSTSDSLLYVD
HLITKSKMHTSLVTLDFSRAFDRVGVHTIIDQLQEWKTGPKIINYVKNFMLKRKIIVRVGPHISNSLPLSNGIPQGSPIS
VILFLIAYNKLSNIISIHKEIKFNAYADDFFLIINFNKNKSLNFNMDNVLHNINSWCSYSGASLSLAKCKHLHICRKHNC
TSTISCSNTQIQQVSALKILGITINTKYKWDTHIKSLLPSLHQKLNIIKCLSNQKFNCNTQTLLHVAKATIIAKIEYGLF
LYGHAPKSVLNKIKTPFNTAIRLALGAFRTTPINNLLYEANILPLEQKRDLQTAKLTKNLIFSKDTPIHKLVKQRKSKKN
PSTIDRTINLCQALNLPYEPVKLHKCKPPWDLPNLIDTTFRTHKKQTTPPDTYRKLYQHTKDSHKTHKFIFTDGSKINST
ISYAVTTDTNIVKYGILPPYSSVLSAEIIAILVAIDQVKSTRGKFMICSDSLSAIDAIKNTNNNNFYSNKIRSLITKLAP
KIKILWIPGHVGIAGNELADHTAKSTSNMPLIYTPNINLTDINRHLKLEFLTRNKLSLEHCNQWYKTINKNNSNIDNYYR
SFHPKSSRLDQTKIIRLRLGHTKLTHEHYFNQNQPQPCPFCQGDNTISHLLNSCPSLLPTKLSIFKNTDPTNLLSELNPD
NLEKILIFLRSSNLYHKI
>R4-1_TCa#LINE/Dong-R4 283-1608 [Tribolium castaneum]
WWYKYLGFKQSNRISHSDTKXKLVDSFITRCRQLVKTHLNSKNLMKAINTFAVPVLVYSFGIIKWTNTDINNINIKIRTL
FTRFRKHHPKSAIERFSLSREYGGRGFLNLQNLHTRQISSLKKYFLNRSNKNILFKAICLSDHNFTPLNLSNPNINEIIS
DENSIIETLKEKPLHGRFFKELDNSNYIDKKASHLWLTKTNIFSETEGFIFAIQDQVINTKNYQKFIXKKNNDVCRLCGT
HSETIQHLISSCQVLVASDYKVRHDNVAKIIHSELAFNSGLIQTKSPYYKYEPDSFIENDNFKLYWDRTVLTNLTITANR
PDIIFISKLERHAFIIDIAVPNTHNIQETYNTKISKYMILASEIKNIWNLEKIKIVPIIISAVGVVPKNLKQNLELLKLS
SNLIVEIQKSVLLKTCNIVRNFQHHYLIAISVMVISCLTXV
>R4-1_ADi_pol#LINE/Dong-R4 338-3554 via tfasty with Dong-1_NVe_pol, 3 frameshifts. [Acropora digitifera]
MMWSKDVNKVVMECYLKSKPVNENGVPIRGYRQRMFRVWQEIGLFESTEQRICDQARAIRKNGWLSELEIEVVKKQINQE
ETDDTNVQGLGDATTDENMEERSMQDEPGDDANIEELDDISRRQEIISEILELSKSGENNPVNFKKANQRQVEEITNRIN
KVIDKIPTRTITETNNLINAASMYVAKELGLKQTTQKQSKMPRWQRRIEGDIKRIRKDINMLEREKRGELRKSGKMEQLE
KKYNIKGKGITTVLEELKQRILAKAAKIKRYDQRRTQYKQNILFKQDQKRFYQELNGTARNENVIPDADESKKFWSDIWS
VGKEHNRSAEWLNNIKNDIKDNQQGELEITSDMVTSQCRKLTNWKAPGKDGVQGLHGRIAEQLNNILNKEEELPEWLTFG
RTILCLKDHSKGNAVDNFRPISCLPLMWKLMTGVIAEVMYKHLEGILPEEQKGCRRRSRGTKDQLLIDKAIXKDCKRRHT
NLAMAWIDYRKAYDMVPHSWIGECLEMFGIAVNVRQFLLSSTKKWKTELTSCGQQLGVVNIKRGIFQGDSLSPLLFVLCM
VPLSLVLRRSKAGYEWGGREFQINHLLFMDDLKLFGKSYEQIDSLVQTVHTFSIDIGMEFGIKKCGVLVLKRGKIAKMEG
VLLPDGQVMKEIEDRGYRYLGILETDHLKEKEMKDLFSKEYKRRLKLVLKSKLSGKNKIMAANTWAVAILRYSAGVVEWK
TDELKVLDRKTRKMMTLYGALHPKSDVDRVYLARQKGGRGLISCEMCVKAEENNLAWYVRNSNERLMAGVRKIKILDSEG
AKEKNEFKRDRQNASLNRWKKKKMYGQFLREMPETVDKDKTWEWTRKSDLKVETEALIFAAQEQALRTNYVKFNIDKSVD
SPLCRMCNQKGETINHILSECKMSAQKEYKRRHDNIARLVHWKLRCKYDVSRGEKWYEHQPEGVVENEKCKILWDMTVQC
DHVIEARRPDIVVVEKENNKAIIVDIASPWDHRVYEKEGEKIEKYQDLKREIGRLWGIRHLEVVPVVVGALGVVSKRLDA
WLEKLGVTIRTGLLQKTALLGTARILRKLLDS
>TRE3B_gag#LINE/DRE 139-1347 [Dictyostelium discoideum]
MADDHSTELQLNHTDNNTTNTNNTSTTSTTKNKSAKIDTPKKQTPTNQLSLNKGLDNQLDIIAPPSITRPLSFLEKNNNT
INIKCYFNQPHIREELTSKDDTRIQQIHKNIHKLFEDILSPSAFKIIGATAFVNCNVDKLTSIINLQNQLALNIDKLNYR
FDISSNDYAIIKTFIKTYSPKHANDAITNNLTKFTSCTSIESFTVTYSYAVAFKSYIITYHLIDHTHNIVDQKIEQPSGI
TRYIKAATRSVTKHKIQHAKNADMATTIKNAITNPNMNKNNQPPKNNINTPPINEIANSNRNNNSLQNSGSKAILNESLD
INNQSQNNNEISHKSDSSNNNNGKNSLSMSNPTDPTIVPQKPLQSQPNKPSAPTPNTINTRRSSNALTTQPVNTGAAKPS
KV
>GilT_pol#LINE/Genie (a.k.a GENIE1a)gi|17865315|gb|AAL47181.1|AF433876_1 putative reverse transcriptase/endonuclease [Giardia intestinalis]
MPRHMRHSAPPRRAARGPPPRPCPGAPRPSTPHAGLRFDPAPPDVLEQSAASRQELQGFKKHSPLPPASDGPLPPVRGAL
SSALPHDLGHDNSPSLSDPRADGRDLDPGPGAAPPPSGTRCGQCGEELPDSAAIDAHIALHHPPTPLAAPTPSSCSSTPD
LAAAALPAEPEPSASPSLSADPAYPFRCAICRAQYKTERGLKAHMGRLRHFTPLEETVHDMIGIPSGNPTEPLLQLVLAT
YTGLARTLPPAETLARLLTICRKADGSGRLPPSRMLLRRGLLGRAWQAVQDEASQAPRIPEPRGEQRRQIIRDLHPLPMD
VSLPAVPHTLGPAPKITGKALVRELRSMKAVATGPSGLGKAHLLHLCDKAGAAEVFATALAGLLATRDWGQLKPLAEFRL
KLLPKPNGKWRPIAIQETLLVAFHRAILKQTAPLKKLPSWQLAFEQMAHVKAISRAEELKASHHLLTVDVRNAFNSVPHA
VIIFSLHRARVPLPTVEYVSSFLGARHCVDLAAVPAGVPQGDPLSMALFCQSIVWPAEAFLSQYELLAYADDLVVASHPS
VPADTVKRDASDALAKVGLCVEQPKCASTQLGAIAFMGTRILRDGPYNLGEQATRSLLGHLETLRAADLSRHDRLRLLAA
CIVPSVNYGPLVDAYPGPHSYADVDAAVVAEVAGLLSIPDQQARALALTPRSNYGLGLVLPGHYHADMQQQRREMAAGTF
RELRRKRIKQSAPLRSFLPLALLRGPPLNNDQVLFVGECLLGRYQKSVVLGTCSFCKQPMRPRHHLLCKAVNGIHVARHS
KVLDALVACAKGRPGFVTLNAAVPVDHLQPDLIIGDGYGDLVLTVPWRVERSFALKLAKYKPLVDAGRARHILPVVLGTD
GTIHPTSAAGLASAGVDVPRFLQEAALVILWHYTQSAISYSALAVPKASPVAAAVQGAPLVPASLPAPARKDPPSAPQCP
ADAPAAAITEAAGLCTHALPASPSVELMLSFEVSNAPSPGSYLPEPSSEAHTAESPTPTPAAAGPPVAPTVEPARKQRPP
IFKYVGARAAPAREDRPYPFRKVSGTLPGGDAPRSG
>Polinton-2_NVi_int#DNA/Maverick 2762-3622  [Nasonia vitripennis]
MDLRSLKTYNDGYSYILTVIDVVSKFSWLEXIKEKTSRNVAEAFSRVLSRSNGRQPICLQTDKGKEFIGRETQQVLRDND
IVHRVARSPDTKAAIAERLIRTVKERIWRYFTHKNTRRYIDVLQNIIAAYNHSKHSATKMTPASVTVYNVAKARENLQRR
YDKNEHKVMRPKFKVGELVRVSRARSVFDKGYERGWTLELFKVARISLTRQPPVYHLQDLSGEDIDGCFYAEELSRVRKD
LEGASFEIESILRSRGKGRSKEYFVSWKGYPEKFNSWVKASQLSQI
>Ag-Jen-1_gag#LINE/Jockey 131-1300 [Anopheles gambiae]
MRGRGRHKGKRLRPIPRNRNRSYDDSRVRSDRSENSYALLSECEDTPAKLQDAVPKTTTTKNSTSATVTNKVPPIVVKSS
SVHFVHKCVIEAGVVRYSTKQTNNGTNVQVTNTSDYRSVIKHLQNSNVAYHTYQLDEEKSTKIVLYGLHDLPTDEVMEIL
KEENLQPTSIKKLQIRQKRYDDQAVYLLHFPAGTISMNLLRTIPALDHCVVKWSYFSKRAGPMQCKRCQLYGHGANNCNR
VARCNKCADDHNSSVCPLTAGSSSSDGKVPEHKLKCANCGGNHTATFSGCPKRPAANLPKEPKRTTSFNMEKNSFPALPQ
TKTIQGWKQLEQNPVKFVNFRQNETASGELFNSSEIIPIVGEVFQKLQKCKTKQDQITVIFEVVAKFCFP
>Jockey-11_DAn_pol#LINE/Jockey 1844-4495  [Drosophila ananassae]
MAYLRICLWNANGISKRKNELKTFLDDNNIDIMLLSETHLTNKNNFYLTGYIFHATNHPDGKAHGGTGILIKQRIKHHSL
QRVATNSLQSTSIRIQTVGGHLNLAAIYCPPRFCISDMEFMQFFDTLGDCFIAGGDYNAKHPHWGSRLTNPKGRQLYNAL
IQPGNKLDFLSPGKPTYWPADPRKKPDLIDFAITRKIPRSIIRAEPLDDLSSDHSVVLLHLFQHAELQNNQIYLTSKRTN
WLRYKKYISSHINIRPSINCSKDIQDAVNHLEDMMTSAAKLSTPATTEKPPYSATNSYIENLVREKRQLRREWQAHRSPS
SKERLKTATRRLTKVLRSREELAQKSYIEQLSPKSTRCPLWKAHPNLKPPIEADMPLRKPDGSWARSDEEKASVFASHLC
KVFTPNQAASPFILPELPIPDPIPAIEFQTTEITKVIKEHLKPNKSPGYDLIAPKMIMELPACAINYIKILFNSITKLGH
FPQQWKKSIIIMIPKPGKDKALASSYRPISLLSCLSKLFEKLLLLRITPHMTSNNIIPEHQFGFREKHGTIEQVNRITSE
IRTAYEQREYCSAIFLDISQAFDRVWLQGLMYKIKLLLPQNCHELLKTYLLNRVFTVKKKNFTTEEFEIKAGVPQGSVLG
PTLYLLYTADIPTDQRLTMSTFADDTAILKRSKCPLEASRSLSSHLALIEKWMADWRIKINGEKSKHITFTLNRQNCPAP
TLNNTIVPSVNEVTYLGVHLDRRLTWKKHIEAKRDQLRHKSRGLHWLINPRSPLLLEYKVLLYNSVIKPIWKYGSELWGN
ASSSNIDVIQRAQSKVLRTITGAPWYIRNEDIHRDLGIPLVKVEISQLQEKYKRKLSTHQNPLARSLNQVSQQSRLRRND
LPAR
>Jockey-10_DF_pol#LINE/Jockey 1580-4286 via tfasty with Jockey-4_DPer_pol, 4 frameshifts. [Drosophila ficusphila]
MTVPVIKIGLWNARGIVNKSEELRLFLIDNSIDIMLITETHMRPGLKMYLPGYDQYFANHPSNTAKGGSAIFIKTNIIHT
QTESTTRAELQLTSLDIPTNGGVLKIASLYLPPSEPWTKNDFDRLLASLGPKFLAGGDFNAKHQWWGNLRSCCRGKRLQE
AIVSSSSQILATGGPTFYSSNTRLTPTALDFFIVNGVATHRLSIEIQYELSSDHLPIVATLHQTPQYKAIRKSLLPPGSS
VEKFNETLDRSINLNTVINHPDDLEDAVTAFMEQIYTAATAATPNVRQHPNQNRSNLLPQNALVLIQLKRRVRREYTEQE
MCASTTLQKASNRLSKVLKKNKQADHMLENAGPDASTNYSLWKLTNRFKRHVTPKAPIRNPAGGWCGSSQQKADIFADNL
ESRFKPFNLTTMENRMLVQMRLDRPFQMALPTRPVTLQEVVTQIGKLKNKKAPGEDRIDNKTLKILSTKALLFIVLLFNR
VLKLSHYPRTWKSAIITMIPKPGKPPTEVDAYRPISLLPALGKMMERVILDRILRLENVSRAIPKWQFGFRKSHGTPEQL
HRVVNFALEAMESKMYTVAVFMDIQQAFDRVWHDGLLSKLKTLLTPQLFLLIQSFLSDRTFSVVVEGEKSSKRPISAGVP
QGSVLGPTLYSLYTSDMPDSWGCTEVDDDDILIATYADDTAVMVRSPSIDIATLGLQEYVSRFEKWTTDWNIGINCNKCA
CVTFSTRPKNCPGISMLGSVLRHEHYYKYLGVILDRGLTFQRHTTMIKQAVLSKAASMSWLLASKNKLSLSNKVRIYKSI
LSPIWKYALQVYGIASKSNLNKIRIAQSKIVRSICNAPWFMRTRDIERDLKIPKIGDVCRTHAESYFRRLGSHPNSLAKR
LIRRPRRRRLKRFHPHDLPLRHI
>Jockey-14_DBp_gag#LINE/Jockey 216-1832  [Drosophila bipectinata]
MSSLSNDQKNERRSSVNQRNGFYSYFSTRDTEVEKSAIKSNPALLTAETQRARSCSPALLTPTPASWSSQCKTPPPISET
NFAPTTSSATISAITATTTATQSTATSTTTASTKTTTSESAKAATATQTGMDRYIQIKRKLSPQSNPAGNKTKINRVLNI
DKEPDRSTTNRFALLAEVEENQPAQDTAKKPKPPPIYIREKSSSALVNKIASLIGNGDNFHVVPLIKGNIHETKVQTKTE
EHFRIVSKYLDTVQKNYYTYQLKSSKGLQVVVKGIEPDVTAAEIKTALKEKGFAAKNVINILNKDKKPQPLFKVELEPES
RSLKKNEVHPIYNLQYLLHRKITVEEPHKRNGPVQCTNCQEYGHTRSYCTLRAVCVVCGDAHKSACCTTNKDSTVKKCGN
CGGSHTANYRGCMVYKELKSRMRQATATRNQNPQNAYIASKTTPDVFFAKAARSSFGPLNTTNGFSYADALRSGREIPIQ
PNSQSAQQAPEQPHSKTETMMLTLQQSMMELMSFMKTTMQTLVQNQNMVIQLLVAQQSK
>Jockey-N6_CQ_gag#LINE/Jockey 80-1354  [Culex quinquefasciatus]
MEVEESSEEEDFXPVRGNRKRKKTSEVTGXVIEXEKVEKTLLNSNKFSALAGDKNNNNASAAGGGDAPAVPEPRKSAGKQ
KQPPLVVTNLGFNRFLDLMALCKVKPEYKLTRSGIKVTCFSVEEFNTVRELLLEYKVQFYSHDRRSERSHRVVLRGLPEV
DVEIIKDRLKEDHNLDVLDVKAIKRKEKSTAGETPYIVFFPKGHTNLKKLSAIKKMGPVIVRWEAYRNEQPNVTQCRNCL
RLGHGARNCYLKSRCNNCGRFHKTEHCKVEVTQPKKCANCSGSHEGLDRSCPKRAQFIQSRQQASKPKPPAWXKDKQSPV
VPSFSAADFPPLPVPVPIPDKLKKTEPQSAADAGSSRGNTGPGAGGQPKAIGEEVLYSTEELWKMFXGELWKMFYEFTAR
LRSCKTRSDQERVVGTMSRKFGAD
>Jockey-N4_CQ_gag#LINE/Jockey 110-1552  [Culex quinquefasciatus]
MPKSGRGRGSSSAASKHSRSSSAGRVQKGGKQTIAKTTAIAKTSDSVIDKNLLHPEYRPRGISPRGFSPRSPVRTRGRVA
AGSSQVNVPKLDGNKSTGGITISNPYEPLSGEEEEDGETTSDDDDDNSNIPESSAKEKNKTRSQERRPPPIYCLGHLADD
IDELLEGNKYSLKLGKTAVQVITLDKKSFADVIATLKANGIRHYTFNHADDVPVKVVLGGYMDRPISQLEEHLQNAKVRP
REIKVLSRKTTETGTHTLYLLYFNRGTVKIQDLRRIKTLDGFWVNWRFYSKHPNDAAQCHRCQKYGHGSRHCNLQPRCVK
CGGTHLSEVCSLPRKVDLGDDAAQTKPRIKCANCEGNHTSNYRGCSARKAYIEDQEKRKKKPAASRPPHRSTSTTVPAAG
QRTVPSNNSASPPGWGRSFASVVAGSGDSAQQEITGEDLFTLPEFFTLAGEMLTRFKACRNKAEQFMALGELMIKYIYTR
>Jockey-6_DVi_pol#LINE/Jockey 1003-3747  [Drosophila virilis]
QGLPRIGPGSHFKYPKMMQPIIKIGLWNARGLVRGSGELRLFLSANNIDVMFVTETHMKEGQRVFLPGYSTYHAFHPSGN
SRGGATVIVRSSMCHIPQSPISTNNIQLARVNLQTSEGPVALASLYLPPKEPCTKXEFADGDYNAKHSWWGNSTNCSRGK
ILQDVVANDRYQILATGEPTFYSSNSLVSTSALDFFIINGYAMSRLNVKTLHELSSDHTPLIADLHATPISKSQRSCLLA
RGADTEIFRAHLEQLVDLNMEIQDADDIDNAIDIFMSKLKDAATRAAPRNQQHLHGDRSPQLPPIIVELLRLKRKVRKEY
ARTGDARIQQIHNRLANRLHKVLARRKRIQIDNMLENLGTDVSTNFSLWKITKRYKTLATPKSAIRDPSGSWCRTSLDKT
EVFANNLEQRFRPHYFAPESHCRIVAEALETPFQMALPSDTVTLDEVKQLVSKLKPNKAPGEDLLDNRTIRLLPDQALLF
LVLIFNSVLRVGYFPRAWKSANIIMILKPGKQPTDVDSYRPISLLPSLSKIMERLILNRMLDLETVTLAIPKFQFGFRKQ
HGTPEQLHRVVNFALEAIEKKEYAVAVFLDIQQAFDRVWHPGLLYKAKRLLTPQLFQVIKSFLEGRTFRVADDGCKSSIK
SIEAGVPQGSVLGPTLYSIFSADIPNHMAITSVDKSDTLIATYADDTAVLTKSSCILLAKGALQEFLDAFQEWASKWNVC
INAGKCANVTFTNRVQNCPVVSLNGRVLDHSLAHRYLGVILDRSLTFERHVTSLQHSYRAKLNKMSWLLSAKNKLSLENK
VKIYKCILAPSLFYAIQVYGITAKSHLNKIRVLQAKTLRMISGSPWYIRTRNIERDLKVPKIGDRIQVIAQKYTERLGAH
PNSLARRLNTACHRTRVRRRLKRHHPQDLLNRVLT
>Jockey-5_DVi_gag#LINE/Jockey 123-2636  [Drosophila virilis]
MAAAGVTNTSAGENVKRTTERSEIQGDISDETILTCESATSAFSETALSHMFCDSDEDTNWTNAIVGIERRAVGAATTTT
GSTCQQVQQQQQTPILAAEVPLNDPPFLPESTGAATTTSTRTTTSANVIANLEGNVPPSLQMSTPTLTIATNTNTGDAQK
LAPTLSECATGTTSGRLRDAAKVTMAAKINGAKRRVTMPMKQQRKVMRAASSLGPNNLQNAMQSNLQPIVRLYNIARPKN
NLAKNAMPGGEEGNMNMDIDANTSSDGYSEVIISDDEATEQQIGGKQVASEVQEAQPQLGQSIKIPTLFVPNVKEIQPLM
EKLNNAQGVNKFTTKCTQGDGIRVQCKDFSTYNAILGLLNTENIPMHTHQPRSERGYRVILKHLHSSTPCDWLRTQLGEL
GYVVRYVNVMKHRFSGKPLNIFEIEIEPRVDGGHTKICKLNELGNQHVAVERQHKSADPVQCHRCQAFGHSKNYCRRPFV
CLKCAGEHPTTMCAKDRDTIAKCANCGEGHIASYKGCAVFKHAQSLININRIRGRQQKKQQQQQQRNTVNMLVQQQQQQQ
QQQRQQVVNQQQQQCNDDNIQRQRNVQQQRLPNNMQVNGTVQQKPPKQQQRQPESPIRQQASQQRSNPNTNPNTKSMTYS
QVARGVGGVKIRNPASRHLEKLQEQLRMEQQQKRQQQQHPWQQQEHYRQIQQRHQEQRHPQQQQRNQNQQQRIQNQQQRF
PSQQTQQQQQQPTRIVQVPTHNEQSQQQQQHQTPQIDCPLMRALERNANIVEEMGKKIDNLLNVLFKFVANTFKNAQPLH
MPMPIQNSTIVENRPIDSDCQMAGSHTMYEANDTNNNE
>Polinton-1_TC_pz#DNA/Maverick 1036-1806 [Tribolium castaneum]
MEHARKMIMIDPSELERLHNRKDTQPNTLNELDHEMKRIIDMKNIDDNEKWTLYNQVLQKYLKIISRSREPVCLPIIYPK
KRNDQIKQSERISLNILGSLPRTLQVKANTLLNIITHKGVARNETGNVIFDGDIIPGSNVFDLITDVMKSGGGSSKLSTE
PVGWKKFAEILYKINVPRTLIVNPKRLKYINEQSSERKELKEKVKVKQSSLSKFITEKEEEEEEEEEEENQITKKSLRTL
SRKPRRLRVPWSPYKSN
>Polinton-1_TC_pw#DNA/Maverick 3803-4234 [Tribolium castaneum]
MHSCHYHNYYVNQAGSGGVGAIYKGSVYQKGHGFGSFLRGLFRTVVPLLKSGIKTIGKETLRTGSNFLGDVVNEVPVKEA
FKTRVNESVQNLKHKAQDKLDNLVGSGVIKRRRIQSKNHSRFSAQRVKNCNRKSKSVPYKDIFG
>Jockey-10_DF_gag#LINE/Jockey 33-1580 via tfasty with Jockey-5_DAn_gag, 2 frameshifts and 3 stopcodons. [Drosophila ficusphila]
MKEVAGQSPAELRAMLSGDLSRRHLDSLPQLNVDAFKTSPATPVTNTVTATSASSGTTTxTVAASPRISTAEMNLGIQFS
KLPAVECSFQAPSASLRRKRNPSNCSKEPADIKKSKANANKVADSSQASTSNGLRNNRFAPLAEENTEEMETNGEMFDLN
SQAQGSSKPDLMKPKPPPICVPKVTNILTLEGTLNNIISADKYEIRTSKFGITRTYTDSAGSFRKVVRSLTALNCEFWHH
QLREDKPFKLVLRNIHSTVPKEEIERCFTDKGFNVANIYCPKKPGMRGTISEINNDDRQNLFYVNLKMTPNVAQSLKIKQ
IGRHRVTVEKATRKKDIVQCYKCQNFGHSSNCCFIKPVCGNCAGDHLTNSESCESHLNNKCLCANCGENHPAGFMGCKVR
MELSKKLKLExSKKHNKxLEERKPTRSTIPTSATRDGVSYADMARNSLPNNSSAAARQSFEHVVGNDDIPSRNLSTLEKA
ISDINARLDQLFKLVMETIESNKAFRDLVQVLIPRK
>Polinton-1_SP_pro#DNA/Maverick 5919-6437 [Strongylocentrotus purpuratus]
MDTRQLQYIGESDLKLKSTFLGVFPSDGLPTVIKTYPAALIANVDTHDQDGSHWVAIYFTKTKGGEFLDSFGRHPSMCSP
RFKPFLNKFSKAWTYNQRSLQSFWSAVCGQYCLYYLLHRVRGDSMASIVSTFNQSRAQNDKKVHASIQRLYPNKNAPIHD
PSFILKQIAKSFN
>3176712_Ath_gagpol#LINE/L1 gi|3176712|gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase  (contains both gag and part of pol)  [Arabidopsis thaliana]
MEPAVASPPHPDGDKLPEVTQKMVSQQEEEAIVVLGDSKVSATGFVASQPEGLSKQVAGTSQKESWVKVAKKHVFTKQKF
VVSEVDGKEKVVVPKEVFAGAKPIWKDSLIGKFFNTKAPHVGKIHMIVNKIWRIGDKSALIDVYEVNATTVKFRIRNEVM
RNRVLNRGMWNIMDIPMIMSKWTPFTEDMQPALKSIPLWITLSNIPPTLFTDKGLEFLSSAVGKPIHLHPKTEACVSFDE
AQILVEADLTKDLPTEYSFMGEEEGELEGQESNVSLSQKETLVEVAATSTQSPLHIAEKKSLEEKTNESAGNCSQENSVA
IVSSESENDKGWITPPKTGRSPTIKTGELKFGEVSILSNSYSVLSGDEDVEEGNKIPEAGEETKKDDPGTEVPTVKMTVS
QDHVHVRTEVQNQRLSLPRGSKTAHKVLSNSFTQSNRNFPKDQKTRVKEDKAQVLSSKLFNDWSMITNFEYNSRGRIWVV
WRRNVRLSPFYKSEQLITCSVKLENRDDEFFCSFVYASNFRDDRKVLWNELQDHYDSPIIKKKPWIIFGDFNETLELEEH
SKVEDNPVVSMGMRDFRSMVNYCSLTDMAHHGPLYTWSNKREHDLIAKKLDRVMVNDVWTQSFPQSYSVFEAGGCLDHLR
GRINLNDGPGSIVRGKRPFKFVNVLTEMEDFKPTVDSYWKETEPIFLSTSSLFRFSKKLKSLKPLLRNLAKERLGNLVKK
TREAYDTLCKKQESTLNNPTPNAMKEEVEAHDRWEHVAGLEEKFLKKKSKLHWLDGGDKNNKAFHRAVVTREAQNSISEI
QCQDGSVTAKGDEIKAYAERFFREFLQLIPNEYEGVTMADLQDLLPFRCSETEHELLTRVVTAEEIKKVLFSMPNDKSPG
PDGFTSEFFKATWEILGNEFILAIQSFFAKGFLPKGINTTILALIPKKKEAKEMKDYRPISCCNVIYKVISKIIANRLKL
VPPKFIAGNQSAFVKDRLLIENVLLATDTASFSVQVNGELAGFFQSARGLRQGCSLSPYLFVISMDILSKMLDKAAGQLP
VRYLGLPLVTKRLSSADSLPLIEQIRHRIGTWTSRFLSYAGRLNLISSVLSSITNFLMAAFRLPQANDVCCLKLIWRILS
HGDSLWVKWIETNLLKNNSFWIIKSSTTMGSWMWKKLLKYREVAKTFSKIEVHNGQRTSFWYDDWSCMGRIMNFIGDKGI
IDLGIKRDKLVAEVWDTHRSRRHITDYLNQVENVIATSKANRKEKADDVVWRGRNDIYKPQFSTRDTWNNIRTTATKVTW
YKGVWFYQATPKFSFCVWLAALDRLSTGDRMANWKGVSSGSCVFCNHPTKSRDHLFFNCPYSSEVWTVTAKNILTTRFTT
DWHLLLNTVSSLQQNRVENFLVRYAFQASVYSIWSERNRRRHGNTLHSATRLIGWIDKQVRNILSSIRIKGDRHYDAGLQ
MWFDTRA
>Vingi-5_AMi_pol#LINE/Jockey 72-3110 via tfasty with Vingi-1_PMa_pol, 2 frameshifts and 2 stopcodons. [Crocodylidae]
MSSKRRPNAQRPSGRWSNNHGNQKSPFKSPSFRRLGPGTRIGQLNVDGLSRAECDYLGKMLKNSIHVLALQETHVKSEEQ
ACLYKTDGYKLATNTYNPKYGLAIYVKNEISHYTKLLSAESxGTSTTSIKPGKLTIVNVYKPPNEKWPQPAPQTPEHSSI
YVGDFTRHHMEWGYEANDENREALTDWTSAEDVQLVYNAKQRRTFRSARWGQDYNLDLTFVSTDRDGAPLLVSRNVLSDF
PHSQPWPVMSHVGIKIPVMQSKRVVRWNPGRADWSRFTAEVEKTIHRIPPMPKEYDRFAALLITVQKNNIPRGYRETYIP
CWNSECENLFQQYQQSGDPALATALLGSLDTARCQKWMECVESLDFTHSSCxAWNLLRKLGATNPAEAVNPQVKLDAVTA
KLVANSKGPLDKHYKQDIRRQLKESMANCPESSELSDSFSTEELRAGLTATKRGKAAGKDGIPPDFLHHLGPMAQKWLLR
LYSNVMESGQIPRIWREAMVIALLKPGKPASDPGSYRPISLLCTTYKLLERLILQRISPIAKASIPREQAGFMPHRSCCD
QVLALTTNIKAGFQRNLKTGAAFIDLSAAYDTVWKHGLLLKLSRLLPCTRLLCLLWTFLGNRWMHVYLRDKASRPRTLNN
GLPQGSVLAPTLFNIYISDMPATSLRKFAYADDLALTTQARTFKETEDTLMLDLSIMAEYFCKWRLRPNPTKSVISAFHL
NNHKAHVHLNVTFCGEKLQHDPTPSYLGVTLDRTLTFRNHLRKIAAKIKSRVNIVRKLTGTSWGATAGVLRTSAMALVFS
TAEYCAPVWAASTHTKCVDVQLNSAMRAITGTLKSTPIQWLPVLANIAPPDIRRDEATYREVVHMNDNPDLPIHRDLKNL
PAHRLVSRKPLWTRVQALAGHDSAAAWRKAWNETTIQNKHLISDPTIKPPGFDLPRKTWKVLNRIRTGHGRCGHLMHRWC
IRSSAECDCGNPDQTMDHITTLCPLYKFDGDIAEIHSLSSRALDWLTNLKLDL
>25403380_Ath_pol#LINE/L1  gi|25403380|pir||H86435 protein F17F8.5  [Arabidopsis thaliana]
MNFSTFFFVDPYDFFIEFFFFKTFHRAVIERETKNMIKEIYCTDGRVVQGDDIMVEAEKFFKEFLQLIPEDFVGVEVREL
QDLLQFRCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKGINSII
LALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISAR
CAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDV
LSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIK
QEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPR
QCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRK
KSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVADAWTR
RSRRRHRTSLLNEIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKGVWFRHATPKYALCT
WLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAALAKGIWKTRYSTRWSHLLTHISTHFQD
RVEGFLTRYIFQATIYHVWRERNGRRHDAAPNTPATVIGWIDKQTRNQITIIRQSGDRRYDKAFQAWLRARY
>31126775_Osa_pol#LINE/L1 Fragment; Genomic ORF; L1_Td-like [Oryza sativa]
MDFLLSFIRSFGMSLRMICWIFSEIFIMVLLPLFSLNFGTIILLPKCAEAMRIQQYRPICLLNVSFKIFTKVATNRIMSV
AQKVISPTQTAFIPGRNIMECVVILHETMHELHRKNKSAVIFKIDFEKAYDKVKWSFVQQMLRMKGFSPKWCEWITSFIQ
GGHVGIRVNDQTGNNFQTYKGLRQGDPLSPILFNIVTDMLTLLIKRDKDVGSLNGVVPHLVDDGLSILQYADDTIIFLEH
DLQQAKNLKLILSVFEELSGLKTNFHKSELFCFGQAKEYYDEYSNIFGCKFGSLPVKYLGIPMHVRKLNNRDWKMIEKRI
EKKLSWKGKHLSVGGRLVLINSVLSSLTMFMISFFRY
>31126775_Osa_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MQECSSRFYCEICESEDHVASRCPIFWSYVKPVAQLRGYTRDGLGFFHIPLSAGMRVKHEPKAALVKVTKGQMSVSSIIS
ELERLIPGRWKWVVHDNGDGTFHTIFPSAAELSRMVEWGNVHTKVGEAEMEIVERGVGNEVKYVMPKVWVQCKGLPSELR
EYLIIWAVGSILGITKAVDMIFTRRYDIARLQVLVLDPSLIPDVVDVVIGDHLYELSFRVEPENGPKEPVPMEMENLDDG
DLEKKKEGNVNQDLGKGAGLFDSGNNSKMGSGGQFSERGGPSAPSSQLNLIPESDGLTVSDEEFDGLDEETIMVDKAQIQ
ESLVAKLSAIPEAVISPSRKSKRRASDSDQLVLERAEKLKAGKNLENLQARGNSVNNVSFTHFSNDQISAHHHNLGVIPS
SKNVVLDDVINDLKCVENNRISEYACSSINQVCTPNVDTESLDDQLEDNFLLQHLCSEIMEEVMDFSEDCENSLKNTLNP
MASSPNSKKKSKRGKNKKNNKNSFK
>Spock_DMi_gag#LINE/Jockey 709-1422 [Drosophila miranda]
NRALAISRRLLEWAMAGARLCAGRREYANGLVEKSVFAAQGYSTRIFRHFVQKAGLIFGFPVHYSEEQLAELVTSDIPIE
EIVRITRRDRASGERVPTGRVKLWFRGEQLPTKINFLYSKVEVKPFVQLIQCFRCFRFGHLAQHCKSGAKCFKCGQDRSK
DIICSGLVCANCKGEHAATHPQCEARKKAYAIQKCMTLENLTRAEVKARYPILFDRTSPNLRDQGEFPRPSWQSNRS
>Outcast_pol#LINE/Jockey 1633-5226 [Anopheles gambiae]
MEHLNILQTNIQSIRKNRDELTHILHDQKYHVACLQETWLKNEDKITIKGFNTIRTNREDGYGGSCILIKKGIKYKPIKL
IDESDEIQITTILIHSGNLIIISIYIAPNTTKQIIKDTLAKITHNTQNYTNIIIAGDFNAHHTYWGDDRIDQKGNTIIEE
IDNSNLIILKNNTYTYVPTDHNKRQTSIDLTIISKKIHNVINKTILEKHIGASNHKIIKITIKKHSTEPIQHTIINMNKV
ITNIKHMKGKDIINIKHFTKKVYKIIQNSKQKINFTLKSWWNNEIKKALQDKNIARQTFNSTKLIEHAIEFRKRTAIFKL
KIKQAKEKQTERNMEKINKDTSSKELWNLLGNISNINTTNKESNLIHNEETYAKEFMNLNFTNNKKSKFRTFFSTNLPID
TELINSDIWKNILKQKKNTTPGLDKITYQMLRNINDESLTQIITDGNKMWENGKINKELKQIKIIAIPKPKKNINDPNNY
RPIALIPTITKVLNSAVLLKLNKYIETKNILPEKSFGFRNKRTINQCINYFNNEINHNQRLNRISGAIFIDLEKAYNNVS
TKILVEQMIKSDIPPQIIKWTYSFLRNRTLIIESNKKTYKMLVTDGLPQGDVMSPTLFNLYTKDIHKAINQTNTKNTIIQ
YADDFVILSSGVNERELQNNLQNALNAFAIETEQLKFNINSNKTKFMIFGKSHHTIQLNIHNNSIEHTNTYKYLGTVIDP
KLNFHKHIELLRNKATNRLNFLKIISTQKNNINPKNSLKIYRATIRNTMETGASYTLNSNKNKYKTMNSTINQALRKATG
CTKTTPINTLHAIAAEIPFNIRSRFIVRKELAKDLVYSPIIRQQLQIHKRTKYKKKKKTIHETTYEKDNKILKQLYIAKN
NDITTHIKINTKIKDTIETKTKTNTQILKQITIENMNKYENNRPTIYTDGSIAGNKVGIGIYIKNKPQHYYYSYRLKNFT
SITTAELIAIEKALLLAQENNIDNPVIFTDSLTSCNILQKAMTENKIEEICYNIIKTATNIKADIVWIPSHVGIDGNDRA
DELAKKGTLTNWFYKNKIRYTDATQYYKKEMEEETKKWYTDLGRNKGKKFMQFQNVFKTELWHKQVNLNGNEVKTINKIL
AGHDLSEFWLHKMKIVENGTCEKCLVPETGRHKIFECQKYKRHKDISLDTLYEKWMETSGNTCKKIIEFIKENNITL
>Polinton-1_PI_ppi1#DNA/Maverick 254-2098 [Phytophthora infestans]
MVKLVCAIVGVAGSAFPVDIDASQLVGDLKKAIKAENAMTFTGDAKDLQLFLAKQPVDDESGKEVVPVYRPSAEEMKEEN
LKWLPDEHRAALKLVEGESDDYIHALTAGEPILGSKTLTTWFYTKNNMELPSSEQIHVLVVVPEQGSSVPTVSQDGVFDH
CINPFFLQFRTVDKVGDWLEFSSLLPLTRRQKLYIRSSYQVIANHALFNPNVGMVKYAVVTGTPGVGKSVFVYYVLWRLI
KEKKRVLLFDNNGLFYFDGSTMLICLALPSKFNEQFWSPDLWCLVDSMDPTSIPGLPYRLCSVLLASTPRRDCIGEFKKQ
PPTADVFYMPLWSKEELATIAPMYPHAAAVWENRFDCLGGVPRLVLQDIETDPQALLMSACSSCSLDDCIMLVSIYSEIN
SKTKIVQTLIHIHSQEPYRKYKVVYASDLAMQLIVRTKWRFDRAKLQSLLGSSDGNPLAQSLCGYIFEFYSMDRLEQGGT
FVYRELFSGKRKRTPADGTIDIPRSSQPRQVAERVEVGQHAKQLYVPGTSNYTAIDAWMPQFGGFQMTVGKTHDIKGGAA
DDLAKLGQNGNRLFFLLPPLYYKTFTKKTPQTIKQYAILVPYPEVRNELSASTLQ
>Vingi-3_AMi_pol#LINE/Jockey 1-2719 via tfasty with Vingi-1_PMa_pol, 1 frameshift. [Crocodylidae]
RKDIQDEVTVLTNDNDNAITIKIGEIYVVNVYKPPCACWPKNVLPTPKHPSVHIGDFNSHHTMWGYEKSDKNGEDLLYWA
SAEDRHLLHDAKQPGTFGSAWWRRSYNPDLCFISHDENGILLPAEKNVLSEFPHTQHRPVVMHVGLQLPMIKSKPKSHWN
FRKAYWTVYTAYIEANINRIQPLASNYSRFVGLVMKAAKKAIPRSFQKRYTPCWSSETESLFKQYQKDKKQATATALLKS
LNSERRRRWHETVENLDFTKSSRRAWKLLRSLGAATPATYQPPQVTPDSIASVLVANSKVPVVKTVRQRVHKELQQINSA
CQPSSPFSVSFTLEEVDKGLAATKSGKAAGSDGVFPEFLRNLGPLSWTWLANLFSNIHTTGQLPKEWKEVKVIAIRKPGK
LADDPKGYRPISLLSTAYKLMEQLILARLKPTLEAIIPKEQASFRTNRSCCDQVLALTSHIEAGFQRKLKTSAAFIDLSS
AYDTVWRKGLLLKLAYVIKCRPTLALINAFLSNRRFRVHLGEDLSRWRVLNDGLPQGSVLSLILFNLYTSDIPPTASRKF
IYADDIALATQGDSFEATEKVLENDLHTLEDYFRTWRLKPNAAKTAVSSFHLNNSQANKMLNVQFCGTKITHEKHPRYLG
VTLDRTLSYRQHLEITGKKTATRVNIIEKLAGTSWGSDAPTLRRSTQALVLSTAEYCAPIWCQSPHTRHVDTQVNAAMRV
VSGALKSMPLPWLPVLSNIAPSTVRRDSAVLREYEKIMADPELPLYEDIAHPPRCRLKSRKPFWLHALQLSSNSLDAESR
WREIWSAATACNKNLVVDPTIELPGFRLQRKYWTALNRIRTGHGRCAYLLNKWGIKDSPNCVCGEVQSVSHIANSCPELA
YHGGIEAIHLAGPDVINWLSNLNIQL
>TART_B1_gag#LINE/Jockey 812-4093 [Drosophila fruit fly genus]
PAVHFPFDLSKSNSPPRLSDRIGKSVVIKNPAEAPVQQLPKVNTTKRNNKMDGHNGDQSEGWATVLSISSDDSNSLSSPP
SIIVSSLDTTPTSHETTIVRRSLYQTNADMKSYDFENIVLNENKNTILPDPLFVDKCGSTANTTEANEKKPANSPFPISI
SKNFSTSSPLTHVDTPTQEDDASAFNTLKAAKTARIIFPTHTHIKPTKPSPPSKELSTNSALKTLSYTDKITGTQKNLPD
KTHVDTPTQDDDINATKASKTAKIISTQTHLGETKPIQPAKDPSPRTQKPIAHKADETLTHTDKLTASQNLVPAKTHINT
PTQYNDTNATNALKTAKINFSSHSHQSEIKPTQSAKNISPLTQKQFTSESAGTHTHTDKHKNTASQNLFSAKTHINSPTQ
HNYTSAATASKTAKLILSPHSHLSETKPTQPALSPSPLSQKQITSIAAKTLTHTNKHTASQNFIPAKTHINIPTQYNDTN
ATKALKTAKAASPSHTYSRQTKPIKSAINALHPAQDTNPSPAISAVTYTDKPTATQNIFPVKTFAELVRENAKRLPTPMQ
NSHQAKNDSAALGRPPTAARKNLNKTLISPKTPGKRRGDCLDEGLLQTSNKKVRIRDDFSDDDLGVTNLLSETPLFKSKA
AIKIRQDSRRDSLQKSAEMDTAPAISPSNTAADSDLPPWKTVPASRKPPSIFLSNIQQIIPLIEKLNYKAGVNSFTTKSE
LGNNIRIQAKTMDAHNAIQNVLLEANIPLHSHQPKSAKGFQIVIRHLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRN
PMRIHEVEVVPKADGSHLKVLLLKSLGGQTVKVERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPK
NLPATCANCNGSHVSSYKGCPAFQEAKQRLSINKIQSLHSQPTHLQTPRNKHPYPKPTHLQTPRNKQPYTHPLPRTSVNN
TKLPAKRIQGKKISQRNLSINKRLHRMKKPRKETSPPTTSKKVLASLEESRKNPNSVLNPANTHLTHFRPPPLAQNIPND
EPKELSGEQYLLNRIEGMEKKINNLLEIVTRLLRQGKDCPKSPKNPFRDPIFV
>I-2_BF_gag#LINE/Jockey 175-1521  [Branchiostoma floridae]
MPSTRAQSKQQSTTKQPAEKQEDKSNKELNQENNKSEKQHKRKPQETENTQLQAKSVLQQSPSETKKRKQKTTNKKDNPT
NNRKQSQQRNKSPSKRQTLSEEEELCICGNDHPEGGCWICCDQCNTWWHGTCAKLSPSTVAYFVKSGEEYYCAYCTIQNI
NKSTKHIRKKDPSHEDVNTPKQTIRSREGPATDTKHKPNKEETNEDKKEEIIIIDNISNPSSYKNSAKILAEISRHKPGI
THSIDLAYSLPRGGIAIHCRESKAASEILKPWPEGAFGNAHEQLKVHKVHNIYGRRAVLKNVPTNTNEAAIEQNIYEQTR
VKVKAHRFHYHDTGKPLKVVRIEAEEGQLSELFTQNIRIENALVKVEAYKTKRHTPIRCYQCHKLGHIAKECKESATCAK
CGGKKDHTKSCRPNCVNCKGNHPANDSRCKAFISLQQKLVDRDRRQHQ
>Hebe_Av_gag#LINE/Jockey 220-1674 [Adineta vaga]
MPSKRGRGGGGQQRRYHSVDNQQRATTTQRKQGPQSSQSIQSPQRTTQDGKAGPYALKSSQPTFSIAPLILEGVNLNKLQ
LNDILKQHLAEVNIHDIQLGRNGIFTLYARDVKSFNNILNDFSSILSSNGQPSATVYVPRSIQRIKDTEKIAFVKRVDLE
LPNDRITEALKNVGLEVTEVIRLTSKDGKTPTRTVKISFSDATNRNIFVQTGLQVDCMHFTAEPATQNSKPVQCYICLKY
NHVAKYCKTKQQVCSRCGENHSNDKCTVTDDAVKCYNCKGNHIATSKECSHYREQEKKMQNMVNQYATTSKQVTQAPSIY
STHDFPPLSQFNQTQKQLLTDNLFDDIINALTSKMETIIEKTTNRLFKALHQKIKKIEKSFGLLDRNNEEKYILTDSDSD
SNEQSQAVKIIKPKPKKQQSEADKSSTTENVTSNKPTMPSTPTTSKDAQNTKEGSNTNKRALSSNNSPDASINDKKTLKT
SSNDA
>Ingi-2_SPur_pol#LINE/Jockey 500-3505 [Strongylocentrotus purpuratus]
MATNDNDDQFVAEAQGRTHGSLSGPALSIISSNIEGLSGAKQELLADLCITTNCDILCLQETHRGPTRVRPRISGMTLIA
ERPHDQYGSAIFARNGLAVDKSYLSDVNNIEVLSIDLMGITVSSVYKPPQEPFDLPGRATDGRMNVVIGDFNSHSISWGY
REMNEDGELVETWADANQLSLIHDAKLPASFNSARWRRGYNPDLIFTSTRIANQCEKVILDPIPHSQHRPIGLKVNAVIT
PRAVPFRRRFNLRKANWEKFAKDFDSYIQDLPATPQNYDTFVELMKKSSRRNIPRGCRTSYIQGLTDHSKVMYEDYIEHF
QMDPFSEETLESGENLTKEIGESRRRKWQEFIQSTDMTHSSRKAWKTIRILGNDYTKAQPRSEVTADQVAHQLLLNGRGN
PDHHPRRARLPKVPDALSSQDDPGFTRPFTMNDLLAAIKAMKNNKAAGLDDILCEQIKQLRPGALNWLLKMFNECLGTNN
IPKLWRKSKVIALLKPGKDAASPKSYRPISLLCHTYKLFERLILNRIAPFVDEHLIPEQAGFRPGKSCTGQLLNLTQFIE
DGYESKLITGAAFVDLSAAYDTVNHRILTRKIFELTKDVRLTGLIQTLLSNRRYFVVLNGNRSRWRRQKNGLPQGSVLAP
LLFNVYTNDQPIHPNTRSFLYADDLCIATQNQSFVKLEESLSDALAGLIPYYATNHLRANPDKTQISAFHLKNRDANHQL
RISWYGKRLKHTPNPVYLGVTLDRSLTYKNHIANTKAKVGARNSILKKLANTNWGTDARTIRTTALALCFSAAEYASPVW
SRSAHAPKIDPALNSSCRAITGCLRPTKVEDIYLLCGIAPPHVRRLVLSQKEKDKQENNPLHPLFEQQPVGKRLKSRHSF
LHSVEPLNTSPHNQRMTLWSNHLQTTPHKLSLSPKESLATGSSETWPTWLSLNRLRTGYGRCRVLMQRWGLGDEQTACEC
GQEQTMEHLLVCPLLPEPCTQDDLEAVNCRAKACVDHWTGLV
>Jockey-1_DEr_gag#LINE/Jockey 509-1876  [Drosophila erecta]
MGKNAMEVDNVALPTSKKNGWQTLVPKKNAGKRKEPPNVATTVNPKVPKVLKHIKKKTSATGSSSSSESESDNESEEPGE
VRQFTVPQKKKTAKLAKVNEVSDAEELLSNTNRFAALPIEEDVVTKEPAIPVEAAVPKPPPIIIPGVHSIADMLADLGEV
TEPGSFAYKATGGGSVRIMPKDSSTYRKIVNHMDNHNMAFRTFQLKENRAFRVVIKGLHSTTPVDYITEELKGLGHIVRD
IKNAISRTTKNPMAMFFVNLEPSSNNKKVFEINRLCHAVVSTEEPRKFNDLVQCYRCQAFGHTKRYCRLQYTCVKCGQGH
ASIECTKAKDAPATCGNCGEAHTASYQGCRVYIEAKKRASPKPKAKAMTPPPKEAHTPPATTNNATFSGFSYADVTRGGY
PQQQQPKHIFNQQGLIDREAALEERIMRRMENMMASMFSQFKDMVMAMFSCQRTMP
>Polinton-2_CB_polb#DNA/Maverick 10925-14738 via tfasty with Polinton-1_CB_polb, 1 frameshift.  [Caenorhabditis briggsae]
MDHFEKMSRDDLRKEVIKLLDIMSGGVKSKRILKSQQLRSMSTSELLTFIREHLQINQAEIRDVPLTLKEVFPFEDLIFS
DYKETKKGIVRTTVYRNKGKEIYFEKYFDLFEERGIEYYMKIITKIINSFFEKNENFVINDIRSDTSVKIYLKLEFKQKK
DSQKSENFAVRSETKELCVGEDREEWYQHACQELMMNMENLQSRGSGWTISGINYLEMNQTMCHSPSGYFYMDLPKCINA
KHCVINPKNNDDKCFMWSILAHLHPAKHHVSEIYSYTPYQNELNFGDLTFPMKIKDINKFEKMNDLVVNVVECTEKGQIN
PLRPSRGITADDSKVINLLYYENKEGNSHYSLIKNLDTLMNKRGEHQKKFCVRCHCSYNVNMNDKIRSNYHRHLEDCGKN
KPVSHKLSKKTSVKFKNISNTQKHRYVIYADFESIIEKYQRALDNPNISWTTDVGKHIPAGFCVIVVDSFTKKLYSIKSY
IGHNTALEFNKYIIKIFQEIMHLSDVEMRELTEEEWTFHDENKECPNCSIKYDSKEMKTTKVRDHDHLTGEYRGPLCGAC
NLLKRKNTFIPIFFHNLRGYDSHLIVGCLESTKYLNEHEIDIKNISSNTEKFISFSYKLPSETDNVYDRCECRFLDSFSF
MPSSLDKLASNLSEDLFHISRDYYSSSKKKFELMQRKGVYPYEYMDSFKRFQETKLPSISAFYDYLNGKKCSQNDYLYAK
LVWNKMNCKNSEDYTEIYMINDVLLLADVFENFRNLSLRVYELDPCWYFTSPGLAWDAMLKKTKVELEVLQDVEKYLMIE
KGIRGGIVNAVKRYSKVNNKYTNTFDPSIPSNYLLYLDANNLYGWAMCQNLPTGDFQFETQSSIDILNDESLKIEDYIDY
LKNLGKGCIFEVDLEYPKNLHSKHNDFPLCPENVKINKESKIPGTIGFKQTVKKLCNTLFDKEKYVIHYKNLLQCLQLGL
KVKKIHRILTFKDSDWLKEYIEMNTNLRKQANNEFEKDFFKLMNNSVFGKTMENVRERIDVRLVTDEHKIVKLASKPNFK
RTIMYNEELSAVEMEKTNITLDKPIYVGFAILDLSKWLMYDFHYNVMQKKYGYQNVELCYQDTDSLIYDIKTEDFYKDAE
EDIDFQKYFDFSDYPKDHVLYSEENKKVVGKFKDELNGKIMTELLALKPKQYGFKTLDGEETKKSKGIKKNIVKNELTLD
DYKHSLFNKSIIRKTQYTIRSVKHTIFTQCQNKVALNNSENSTEHKRYIIKDNHSTMAFGNVNIKPEVLGI
>Ag-Jock-13_pol#LINE/Jockey 1514-4162 Previously represented by 55244781_Aga_pol, gi|55244781|gb|EAL41575.1 [Anopheles gambiae]
MDAKLRIVTWNARSIAAKKIPLMEFLLRQKVDVALVSETHLRPDINFSLKGYHFLRLDRQGTTTRGGGVAIIVRSGINFN
QISHLNTTVIEALGIEVQLSIGLIKIIVAYCPMQCRRNDGKAAAFKNDLNIITRSHQRLIVGGDLNARHQAWNNLRRNTN
GELLFRHSETGQFTVDFPDSPTYISAGGTFSTLDLFLTNVKISKPETLDELTSDHFPVVTEVDCSVSAGSIRRRKDYQNV
NWQRFGRLVDNQIQSTEILSVPEVNIAIANLEIAVRSAEAACVKESMIRGEFSDMDSHTLALIKERNRLRRIFQHTGDIT
AKRLASTIAKQISARVEIIRNENFGRSIQRMDTRAPAFWKVSRILKQRPKPVPPLTSLGQIQVTPSEKSNALASQFANAH
SDGVNRASRNEAKVATTLIRLEDSVFTVPLQEKVTITDVRIAIGRMKNMKAPGFDKIFNILIKHLQVKALCLITKVFNIC
FELGYFPSTWKCAKVVPILKPGKDPTLPTSYRPISLLPSLGKLFERIILDRLQNWVSELNLIRPEQFGFRQEHSTVHQLL
RVKGCIEQNKTDSKSTAVALLDVEKAFDSVWHGGLLHKLVDFGLPVYLVKIISSYLKHRTFRVALHSALSDPNPVPAGVP
QGSLLAPLLYILYTTDIPPLPCDGMLFLFADDTAIAVKGRNMIELKSRLQRCLDAFLRFAADWKIKINPSKTQAIVFPHR
FKKTLTPPLSPGLLVNGTTVPWSPSVKYLGLTIDYKMIFRGHVESILERGHLLLKCLYPLISRRSRLSQLNKLAVYKQII
LPVATYAAPVWSTCAETHLCRLQIMLNKLLRMITDTSRFTRNADLYTIAGVLPFKEEIQNQSEKLYNRCSVSTFPLINSL
VQA
>Ag-Jock-13_gag#LINE/Jockey 289-1521 [Anopheles gambiae]
MEVENRSHDSVRVETTNTAVTPQTAASTSCPNTVIRSARIPPIVVNAPYHQLRAELAGIPGIVYQFAGAKVKLIISLVET
RDRVLTLLKANRKEFFTHELRSEKPFKAVIRGLPDLPEEDIITALREQSIEPLVVHKISKKHYEGHSRQACLYLVHFTKG
TITLAALKCIRTVDSIRVSWEAHRSGKGRIVQCHRCQAFGHGTRNCSMKKRCENCSEEHDSETCPTKAPEATKCANCNGS
HRSTDPDCPSRHNYNLSRQKTSTITHRQPKPSGQPPPALTNANFPPLKHLGLPTPANAPNAYHNTAATTTAANTVPDVTT
NPWLPRDRAVTESTTRATIMRTQPMNGSAMRAPSSHNFTAPADTLPGDEEGDFSIEEWVEILRIMTQRFRLCRNRYEKFA
VIAELAIRYGC
>Ag-Outcast-5_pol#LINE/Jockey 1067-4708 [Anopheles gambiae]
MKIKMATINQKEISLLQTNITSLKRNKEELERMMNANKITIACITETWMKEEEVNKVNVSNYNLVTSNREDGYGGSAIYI
RKNLAYKVIKHDIKDKEVQITEIKLTREKINIVSVYMSPQLKINRFRENVSKLLHNRSGNQKNIITGDLNCHHKIWGNPT
NDSKGNFLLNELNDSNLCLLHNKEKTLIPTDRSKRETAVDLTIISEDIIDKCQRTVTEHHMGATNHKTIITKINEIIQEH
TVTYTNKSKLFKEIEAIEVKETTTAYQVTKQIKKLIKSNKITSKKKPKIYWNIETEKAWKNKNELRKIFNNDKSTENKIN
MNKGIAEFRTKKRLNKIKKFEDKLEEVDFNRDPIKLYEFLQKMEGKFKSKTKAGNIIETDRKAAKIFLDKHFFKNKKGNK
KPYRNFKPNKDIIDIHKWNRLLKKKKNTAPGHDGVSYEILKKINEKTRLVMVNEINEMWHKGIIKKHYKKMKIITFPKAN
QDKNDPLNYRGIALIPAIIKMANSAVLEEMNRYWNINKVIPGTTFGFIKNRSINNCTNYITNRIGQNKREGKATGIIFLD
LTNAYDKVRTDILISKLEKYQTPKEIIRWIGAFLNNRTIELNTEDTIINKLISDGLPQGDVLSPSLFNIYTKDIHDKINR
LGIQIIQYADDFAIITQSHSHHILQTKMQEIMKQFSDITDELKLEINTEKTKFMIFDTKNNNIKIRIKGKSIEKVNNYKY
LGLWLDNKLTFKKQIDAMKTKTQKRLMTIKRICNYRNKLNPNKTIQIHRSFIRSNLEIGTASIRNAKKELLKQLDTIQNQ
SLRKVTGCTKTTPIPSLMAIAAEIPLGIRAKYLASNEQAKEIAHSKIHRNLLCDRNQNNNTRNNNNKHKTYYEKLYEENK
NIINKMDNIVINDNTKRVSIISNAPDNITKNQHTNKQILKRHYQQEIEFFRKTNTIIYTDGSRTDDGCGIGIYIKPHNKN
MYWSYKYKLKNNTPITSVELTAIDKALQIAVENNIINPILYTDSKAACSIIKREQYNNNIEESTYNIIKNSLKINAQIRW
LPGHIDIEGNEKADALAKKGVTADNIMENKLRKSDIKLMFQQRMIFETQEWYTTEIQHKGKKFAEYQKEFKRDNWHKTIN
INANEIKTMNRILTGHDFSKYWLKILKIEENDICDVCQVQETGKHQIFHCTKYNNERQKYPNIQEDLFRKHWKNNDGKII
KEIIRFIQDTKISL
>DOC_gag#LINE/Jockey 168-1910 [Drosophila fruit fly genus]
LFHIVLVIVICGLRTMNQNDIRSQRQCEQDERRLSLQRNNAYFSFVSPQIGDRAPSPSTNSKLLPSANDRPRSCSPSLPA
SAHKSWSEETASPTPLLSQRQTTVPGNCNTAITSAVTSLATATTSTSSAAQLIIAVPAVNNSAALTVCNNNNARKEESKQ
KQKSISTVQTGMDRYIQIKRKLSPQNNKAGNQPKINRTNNGNENSAVNNSNRYAILADSATEQPNEKTVGEPKKTRPPPI
FIREQSTNALVNKLVALIGDSKFHIIPLKKGNIHEIKLQIQTEADHRIVTKYLNDAGKNYYTYQLKSCKGLQVVLKGIEA
TVTPAEIIEALKAKNFSAKTAINILNKDKVPQPLFKIELEPELQALKKNEVHPIYNLQYLLHRRITVEEPHKRINPVQCT
NCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKKCSNCGEKHTANYRGCVVYKELKSRLNKRIATAHTYNKVN
FYSPQPIFQPPLTVPSTTPTISFASALKSGLEVPAPPTRTAHSEHTPTNIQQTQQSGIEAMMLSLQQSMKDFMTFMQNTL
QELMKNQNILIQLLVSSKSP
>DOC3_DM_pol#LINE/Jockey 1813-4608 [Drosophila fruit fly genus]
SDYAFDAAKYERLHDLHARNYARAYEEPKHPYSNARFFQNRIMTPLTIATWNANGVSRHKLELAQFLADRNIDVMLLSET
HLTEKYNFQIPGYKFYFTNHPDGKAHGGTGILIRLRIKHHFLGNWQEDCLQCTSINLQCHNGALTLAAVYCPPRFTISEK
KFTTLFDSFGERFVAAGDWNAKHMYWGSRIANPKGKQLYNAIIKPQHKLNYVSPGAPTYWPADPMKLPDLIDFAITKRIS
QSMITAEALPELSSDHCPVIFHLLHQLQHIERPCRLTSNRTNWARYKKYVCSHTGFSSPLETEQDIDQFAGDIESILVAA
AKASTPQDNHVCSTKFNKTSRDIELLVLEKRRHRREWQEHRSPGAKSKLKAASRRLTKALKKEEADAQLRYIENLTPTGT
KNSLWKDHRNLQAPTETVVPLRNSTGNWSRSDTDRARVFADHLKKVFQPNPATNSFTLPPLTASDLAPQDPVEFRPSEIT
KVIKEQLKTGKSPGYDLITPKMIIELPMCAVLRICLLFNAITKIGYFPQKWKKSIIIMIPKPGKDKTQPSSYRPISLLTC
LSKLFEKVLLLRISPHLKTHNTLPSHQFGFRAKHGAIEQVNRITTEIRTAFEHREYCTALFLDVAQAFDRVWLDGLMFKI
IKLLPQNIHKLLKSYLYKRVFAVRCSSSTSSDCTIEAGVPQGSVLGPILYTLYTADIPTNYQLTISTFADDTAILSRSRC
PVKATMQLARHLTCVEHWLANWRIRVNEGKCKQVTFTLNKQTCPPLVMNHTRIPQADNVTYLGIHLDKRLTWRKHIEAKT
THLRLKARDLHWLINVRSPLSLEYKVLLYNSVLKPIWTYGSELWGNASRSNIDIVQRAQSRILRIITGAPWYLRNENIHR
DLQIKLVIETIAEKKVKYNEKLASHPNPLARKLIRVCSQSRLHRNDQPAQR
>Jockey-1_DVi_gag#LINE/Jockey 580-2205  [Drosophila virilis]
MASNKPNPLIPDYPASPIYNPSDNVLPPYITLCGGTTLLTTSCITTTACSLGTTTVTSSLAHGISSQGPAIPSIPGANPA
TSPDLHAFLNNYPPKTSRTWQGQWFKATKREGGNLSPHIVRKKASTTETKKASQNRFAALCDEEESDMDTEVELATNKEA
CADEDVDDRPSTSHAARARASRQQTANKKLAAHPQPTQTAPPNERPASKVPRITVPNVLSFTKFCKELDSVLGADTYTVR
SLNSGDCIVQCRNSDEYRTLARHLRENGCLFHHHQLAEDRPYRIVLRNIHHEVASEDISAQLAEKGHHVVRIYTPRSRVN
NEPLNMRFVDLRKAENNNLVKSITVLCRHKVSWEKPRKTSGPVQCNRCQEYGHTKSYCSRHYVCKECGDNHPSNECTLGK
DENRCCHHCGEAHAANFKGCKKYLQYAFQQKNQHKANGRDASRSRDPRPKTAAPACSFVPGQQSFASVLRGTQPAERSAR
SSSRRRNTGSTPSQSQPVADNCPNSALELMMKQMFARFDQLMSLIQTLLQALMHTSAKNNSA
>Jockey-4B_DVi_pol#LINE/Jockey 2029-4716  [Drosophila virilis]
MAAQMRLGSWNARSIIQNANELKLFLRKHEIDIMLVSETHLHAGLYFAMEGYACYRADHPADRARGGAAVLVKQNLVHYQ
LPQATSSATQMAAIMVGTPLGEIPVAAVYLPPNLPWSRAGFDSLLEQFGHQFIVGGGSYRADNRGIALHEALTSCSAQVL
ATGRPTHFPYNRQSTPSWIDXFIYKGIPNRLISVREEYELSSDHLPLLATVSTSAQRTVKKRRLVTPQSNIQRFKTELNG
MIDLSMPILTAEDADAAVQTLLCQVHTAAANAAPAQRYLTPTSQPTRTLPPIVEGLLCLKKRLRREYVRTQDPRIDRIYR
RIANRVRKELTLLRRKVTDTMLEEATADESSKFALWKLTSRYKRQAAPKFPVRHPDGTWARSPMERAEAFACNLEERFKP
FETASRGRIQRVVQILEAPLQMSLPLSPITFQEVKQEIKSLKNNKAPGEDWLDNQTIKLLPYKAVLFLVAIFNATLRLGH
FPVAWKKAHIIMLHKCGKPPNQLDSYRPISLLPTFGKILERCILRRILDTPEIKRLIPKFQFGLRLKHGTPEQLHRVTNF
ILDGFHRKEYVVAAYLDIQQAFDRVWHAGLLSKIXGKLNPQLFNIIASFLNERTFRVVQDGIASHTKRIRAGVPQGSVLG
PTLYSLFTHDMPKASEIALVSRQDLLVATFADDTAILAKNNCVYEATDILQEYLKRFENWACRWNISVNPQKCATVTHTL
RKDSSPGLFLHGELLEQVRGHKYLGITLDRRLTFKKHVTEVTNNLKSKTRRLSWLLSPNNKLSLRNKVLIYKVILAPAWR
YGLQVYGIAAKTHLNKLRIMQAKILRKISGAEWYIRTRDITKDLKVTMVGDLINQQAASHLFKLRNHPNVLARNLLKRRR
RRLKKSYPIDLAKRRL
>Polinton-1_TV_ptv4#DNA/Maverick 15908-15213 [Trichomonas vaginalis]
MRRRFTSQKNTNAKAEITVGYNVNDDKSRIIQNVKVNVSPELTRSATQPNLLTRDLPKNEEEQNKEDGDPIILSEPGKEP
VEIPTYPTYPPPLSSNIENPGIYDSSRNAPYKIDINSELMKIYRDIIINNYDSIINLIDQSGLIILPYESLIHIIAILCD
VQDSDVKIQFFIDDEVSCCGTVAKINPIKDISTIKISKNGTTTELHLTYNDIYNKIVDEYKISLEKFFVKAI
>Jockey-5_DBp_gag#LINE/Jockey 194-1888  [Drosophila bipectinata]
MSEFDTHTVLQRQQDERRLSLLRNNAYHSFVSTQDNATANPTKNNQPRSITPTPSNELYPTSQGRARSCSPALSLDKTPY
PSLMPACIATVTSTVTSLATATATITTTTMVSTARAIPSTVISETAVQANNAAPYTSVPPSKQRSAVQTGMDRYIQIKRK
LSPQNSRLGNSAKITRGTSKQSTIEKPIEANRFAILADKSDDTPPEVIVGDNKKPKPPPIYIREKSSNALVNSILNLIGP
DNFHIIPLTKGNIHETKVQTNTEANYRILSKYLNDNNKNFYTYQLKSSKGQQVVLKGIEPEVTPDEVTRALMEKGFNVKN
VINILNRERKPQPLFKVELEPETKSKPLKKNEVHPIFTLQFLLHRRITVEEPHKRNGPVQCNNCQEYGHTRSYCTLRPVC
VACGDLHESHKCPKNKEDPSSKKCGNCGGNHTANYRGCPVYKELKSRTHQRVTTAHSHTPPMKSTRNVFPPSAVKSLANN
EVTDKSASYATALKLGLKSTAPTNPRSSVSPHQPEEPSTNKLETMICNLQQSMMEFMSFMQTTMQDLMRNQNVLIELLVA
QKQTK
>Jockey-5_DPer_gag#LINE/Jockey 285-2177  [Drosophila persimilis]
MNANSSSDSRLRNKRTDHERMLLISGKLPCEIRAEYRSEAERSTCTETTTTVTFTSATNNTTYTMATATISSICPALSFD
SQENSISTCPDDTEAKTLRTAAERLLDAQKRRTGKRKNDQTLSSYPKSKRGSGGRDLGVSPTTSQQANTNNRFAILDTNI
PSDSNNEEVRMNVDADAGNDQMDEHLYEAVNTDQCLQGESASSGNQLKGPPKPPQIVVNISNLNDLFDVIKDVANLNNVV
VKANQGETVRILPKDSDTYRAIVDRFDAIGIEFHTYQLQTEKPHRIVVRDLHHSTLNNDITAGFKMLGFEVLHIHNPSSR
TNKDEKLNIFFINIKPCAKINEIYQVKTLCRQKIRIERMRKSTEIAQCRRCQDFGHTAKYCRRHHNCARCGENHQTSQCT
RPLDAQPTCIHCSGSHMASYKGCQWYQEFLRRSMGSAKKAINTHRTGHVPLNNQVAYAYSTTLPGDQQQFPTLQSSHKKG
ANRPTIQQHQRNIVQHQPLVGTRSNTGASYAAVANGNSNAIPATPAQRRFHSLQAHQPQGLNNQQQNSYEVQALLQQQQT
QFQQWQQQLQQQQQQQFLMWLQQQQQEQQQHNSQANQRLEKLEKMVFELANTIKQWAGSNLQLQNNVSASQ
>Jockey-5_DF_pol#LINE/Jockey 287-3085  [Drosophila ficusphila]
IFDMQSTTKPYGVYVVYAYNYARSNAKPKSTYTNAGFTTIQIMTSLRISTWNANGVSQHKLELAQFLLDNQIDVMLLSET
HLTNKYNFQLRGYTFYGTNHPDGKAHGGTGILIRSRIKHHYHTKFAKNYLQATSINIHLNTGKQLTLAAVYCPPRFTIAE
DEFMQFFNSLGDHFIAAGDYNAKHTHWGSRLVTPKGKQLYNAIIKAKNKLDYVSSGTPTYWPADPKKLPDLIDFAITKNI
PKNMISAECLSDLSSDHSPVLFTLLRHPGTWDHSSKLTSHKTNWVKYRKYISSHIELSPHLSDEANVDSFVNSLESVLVS
AARVSTPQTTNTQYIQKKTNLQIEQLVLEKRRLRREWQCHRSPSAKQRLKHASRQLDQALQQEETYVHRRYIEQLSTNST
KHSLWRAHPTMSSPKETVMPIRNSTGGWARSDADRASTFAKHLKNVFQPNPATNAFTLPTLSYEPQPQHEPIEFRPNEIV
NIIKRQLNPKKSPGCDLITPKMIIELPYCAVCTLTQLFNAIAKLGHFPVRWKKSIIIMIAKPGKDHTIPTSYRPISLLSC
LSKLFEKCLMTRINTYLRIQEGIPSHQFGFREKHGTIEQVNRITSEIRNAFEKREYCTAIFLDVSQAFDRVWLEGLMYKI
KTMLPYSTHKILESYLYDRKFVVRCNTAISDDYTVGAGVPQGSVLGPILYVLYTADIPTSTRLTTSTFADDTAILSRSKC
PIQATAQLALHMVDVEKWLSDWRIKVNELKCKHVTFTLNRQNCPPITLNNTLLPQANEVTYLGVHLDRRLTWRRHIEAKR
THLKLKASSLHWLINARSSLSLEYKVLLYNSVLKPIWMYGSQLWGNASNSNIDIIQRVQSKILRTITGAPWYVRNENIHR
DLNILPVKEVIAEQKVKYLTKLSVHPNHLARGLTRLSNQSRLRRNDLPTQRPT
>Polinton-2_AMi_2p#DNA/Maverick 3188..3637[Crocodylidae]
MLRCQCYISQVISRKTAQERDNVPETPEEHVPVRRPLAALIENHRNTHPEDQKPHGPDPTQTRAEGHGKKKKRPHGSSEE
NAPPNPERAMCENTNIHSSKAAVLGSVNKKHKTDYSHTLEKPEEVLPMCLKDHDYFSSEKRRQRGDFRVC
>Polinton-2_AMi_8p#DNA/Maverick 8971..9312[Crocodylidae]
MEYAEKMYLVPSHQLEQLRTPPLPQENIRTEATRLLDAEMRDILQRPGLAEYDKAKLYAAVLQKYLVHVKQGDLDKGKLT
LFMPEQNPLEMAKPLDTPTNPDPTVQEVLDNVPI
>Jockey-4_DEl_pol#LINE/Jockey 1987-4734  [Drosophila elegans]
MTQPILKIGLWNARGLIRGSEELRLFLNAHNIDIMLATETLMRDGQRIYLPGYLTYHALHPSGNCRGGSAVIIRSSLSHS
PLPPTSSNDRQIARAQPQTSEGTVTIAAVYLPPRESWTKTEFESMFSALGNKFIAGGDYNAKHVWWGNSRGCPRGNLMQE
VIANGQYQVLATGEPTFYSYNPLIAPSALDFFVTNGFTTGRLNVRTLHELSSDHVPVLAELHTTPLRKPQRSRLLAHGAN
INVFKAHLEQLSEVNIQMLEEGDIDSAISLFMSKINQAAELAAPRNRHDTYAPRPLQLPPRIAALLSLKRRVRREYARTG
DYRIQQIHSRLANCLHKALARRKQDQIDNFLENLGTDASTNYSLWRITKRYKAQPTPKSAIRNTTGGWCRTSQEKAEVFA
KNLEQRFRPYDYATERQCQQVEEYLESPFQMSLPVSPVTLSEVKVLVSKMSPKKTPGEDLLDNRTIRLLPDKALQFLVLI
YNSILNIGYFPKVWKSASIIMILKPGKLPTNVDSYRPISLLPSLGKIMERLILNRLLTFENVTRAIPKFQFGFRLQHGTP
EQLHRVVNFTLEAMENKEYAVAAFLDIQQAFDRVWHPGLLYKAKSLFTPQLFQLVKSFLEERTFHVSDDGYKSTVKRISA
GVPQGSVLGPTLYSIFASDMPTHTPITEVEEKDVLIATYADDTAVLTKSKSILAATFALQEYLDAFQLWAENWNVRINAD
KCANVTFTNRRETCPGVSLNGSPIRHHQAYKYLGITLDKKLTFKRHITAIQHSFRSKVARMSWLLAPRNRLSLGCKVMIY
KAILAPSLFYGLQVYGIAAKTNLNKIRILQSKTLRRISGAPWYMRTSDIERDLKVPKIGDKLQSISKKYMERLNAHPNSL
ARKLGTAAFNNADPQTTVRRRLKRHHPQDLPDRVLI
>Polinton-2_AMi_1p#DNA/Maverick 1384..1971[Crocodylidae]
MTPERQRSSSSITSVLGKRSCFCGNQSPGASEEEGAVAFRRQLGIERTGPVSLRSHRRLMKSLVRVCCYGILKYCLRERL
FEACRGCLLNAPGQGSHECMDRTDEDINQTIRELCIELCMESILNAVMALGYSMDCLCLTEKHLAQGVAIINHIHLAGDP
HAALHGVIHEEDKPLVPYIERLIGTRNYKFLLQRTM
>Jockey-4_DF_pol#LINE/Jockey 1920-4583  [Drosophila ficusphila]
MNPLKICFWNANGVSQHKYELLQFLNNHDIDIMLLSETHLTNKNYFYLTGYVFHATNHPDGKAHGGTGILVKQRIKHHPQ
DTFATNYLQATSIRINITSGPLTLSAVYCPPRFNIPENEFLGFYNSLGNCFVAAGDYNAKHHYWGSRLINPKGRQLYNAI
IKPSNKLDFVSPGRPTYWPADPNKQPDIIDFAVTRRVPPRLIRVETLAELSSDHSPVLLCLFEHPQLVKRPQFLTSNTTN
WLKYKKYISSHIEIEPNISCEADIENSLKHIADVMSSAAKHSTPDPLATSLPNTMRTNMQIQSLLQEKRRLRRNWQTHRS
PATKQSFKEACRKLSKALITEKNQAQRAYIAXLSPTSNKFPLWRAHPNIQPPIEPDFPIRSPXGVWARSDEEKANIFASH
LQNVFQPHPPANQFTLPNIPPAEPSSTIILETSTVTKAIAEQMNPKKAPGHDLISPKMIIELPACAVKXITTIFNSILKW
GYFPLQWKKSVITMIPKPGKDKSQPSSYRPISLLPCLSKLFEKLLSCHLRTHLQNNRAIPLHQFGFREKHGTIEQVNRIT
AEIRTAFEYREYCSAIFLDVSQAFDRVWIEGLVYKIKTVLPQNTHKLLESYLKDRVFTVRCKNFFSENHKIKAGVPQGSV
LGPILYVLYTADIPTSSQTILSTFADDTAIISRSKYPKTATAHLKNHLTDVEKWFADWRIQVNDQKCKHITFTLNRETCP
PLSLNNKQIPQVNEVTYLGIHLDRRLTWRRHIEAKKTSLKLKANSFHWLINPRSPLPLEYKVLLYNSCLKPTWTYGSELW
GNASSSNIEIIQRVQSKILRTITGAPWYIRNANIHRDLDIKPVKEEIDSKVLKYENRLSIHPNQLARQLRRLRSHSRLQR
NDRPLLPN
>T1_gag#LINE/CR1 271-1497 [Anopheles genus]
MQCSTCNAPTDSANSVSCAGVCGSKHHTHCTGLSRDSTRELGRNNQLLWLCKNCNEFRNGTNSLLTSEIAALLELVKAEI
LTTIDSSLSSLRSAIKSDLLAEILALADKLTPVLAKPSVSQPSRTHTSTNASSLNATNTRTTKTASTRRTFTNSMELTAD
IQQAANDTNTVEASDSCNHYTHRTKVTSDISAGPCRTNTKSSSDPVLNHDTTNTGIAEKVWLYFTNIKSHVSADDMRVWL
KAVLPTDNIDVYRLTKKGANLDLMSFISFKVSIPKSLKDLALQSTIWPVSLTVREFVDRGLPKQRIHERARFDPSALTSH
RSSSANCSSAAPKSTAHPDHFLDHRSPSPQRGNQSLSQMTEILEAIQPEFPPTPPQLSPGVGLQSQNNLSNTNRSPQISP
FAKRIAHN
>CR1-20_BF_gag#LINE/CR1 387-1430  [Branchiostoma floridae]
MLSQGLRDENASLKEVIRILMTDGKHSSSTVREDTWNHVSKGPPATSNLFPSSSTSVPLSNRYQSLLDIEEERSDDEYQR
SPTPQVKNSRLFPRRSGFSQGTRGPQSPRRSGFSQGTHGPQSPRRSGFSQATRGPQSPRRSGFSQATRPQMPQHKSQPWK
RPDVVILADSMTKDLNPRRMSRSTGKVVICRTHRGARLEQVERLAENDLSDIQPQLLILHVGTNNLHEDISSITRKFETL
GNSMSGNSTQLCFSSLAVRDGSTVKVSKVNQYLASLCARKGWGFLDNKDIELHHLYDGVHLTAKGTALLATHLNDYIRQG
FQEDVFNRRGRWSEVQRRLVQLSRKSY
>CR1-20_AMi_gag#LINE/CR1 428-1489 via tfasty with CR1-4_Gav_gag, 4 frameshifts. [Crocodylidae]
MRPGSPCNMVMGTRRTPRLPGLDGPPPPGTLEASTQTEPMVPASTQTEPLTPGCGGCLARLLDAGIRGTSTPTCGMCSLV
ETLEGRVRELQEEVDRLQTIREHEAEIDAYCQALHLEKDATETGQKSGPEQDAPTDSGWKLVTSGLKPQRASVAPPIALH
NSYEALTPSMDDAPVGMQPTPARKQRRVIVVGDSLLRGTEGAICRPDPFAREVCCLPGARIRDVTARIPKLVRPTDHYPM
LLVHVGTNDTARSSPGRIMRDYKTMGAKLKDLGAQVVFSSILPVRGRGCRREECIEEVNRRLRRWCHHVGFGYLDLGTQF
NYSGLHARDGIHLTGRGKKLFSTRVADLLRRALN
>CR1-21_NV_pol#LINE/CR1 1030-4458 [Nematostella vectensis]
MAGHLMAPLIVLLFALHLQNFLLRWQSPLIESKAGPFISPALFEMSLDKVKIFMNNIHPNRRKLIAPRSNPSSLAFRLLI
LSGDIPLNPGPTYRYPCGACSKPVKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSWICCACDVANFSKSSSGPD
IPDDNYYLSLSTSVQSSGSESPQPLTSSPRQRSPASNKMKDPHKLRVLTLNACSLKGKDKRLEFQSLIDNYKPDIVNVNE
THINDTVFSAEILEKGYTIFRKDRNEFGGGVLSAFSNHLVVTHEEQMDGNYEGIWSKINIAGSKSLFVGSVYRTPDSNVD
PLVALDGALCKLVKNPIPNILITGDLNLPSISWEDDNYAVRPNPTYGLEVNHKFLDIVNDHSLTQHVMEPTRGENTLDLV
LTTCPEMVLDLVVEPGMSDHDLVLFDLNLKPSFNKKKPRKVFVFKKGNMGAVKTDLKKHLDNYFNNEAYHKLINENYDFF
KTTITEIMKKHIPQKNISGRWNLPWITSSIKRLIRKKQRLYNHAKHCNNHAAWKKFKDLRKLVKKNLAKAHSEYVSQLLT
VPEGSETANHTITKRFWTYIKSKKTHDVGVAPLRDDKGELVSDSLGKARALSSQFQSVFTHENNSSIPTLGPSPYPTIPS
TLISIDGVIKLLQNVNPKKANGPDLIPCKILQEAAHEIAPALTFLFTQSLETGTLPNDWLSANVTPVFKKGNKNIPSNYR
PISLTAVPCKILEHIIFHDIMNHLDTHNILVKFQHGFRRFFSCETQLITTLEDVGKALDLGRQTDLIIMDFSKAFDIVPH
QRLISKLDFYGIRGLLKTWLTTWLTHREQSVLVDGVSSAPISVSSGVPQGTVLGPLMFLLYINDIGNDCKSSTIRLFADD
TLLYSVIEATSDAHQLQSDLTSIEKWAEKWLMSFNPTKCFVMRVTRNREPIVFNYTLMNHILKPVEHHPYLGVELSNTLD
WSWHINNKVSKANQTLGFLRRNLSNCPENIKEAAYKSLVLPHLEYASSAWDPWLKKHVKQIEKVQRRAGRFVKNCWDRTP
GTVTNILNDLEWPPLSKRRQDARLTLFYKAVNKKSALEIPDNIDRRTRQLRSSHPDKFIELCPRTEAYKNSFFCRTIKEW
NKLPRLTLDSTSADIFRERIKLN
>CR1-23_CQ_pol#LINE/CR1 2-1912 (fragment) [Culex quinquefasciatus]
ALKKLKSSKRAALKKFSKCPISVNRLNLNQISNDYRRLNKSLFLAHQSRVQNRLKQNPKGFWKFVNEQRKESGLPSTMIR
DGVEVSTSSEICDAFRVQFSSVFADNNLSDPDVAAAADSVPDSGLVCSDLQVSREDFNAACSKLKSSTSPGPDGVPAIVI
KKCANSLSEPLLRIFNLSLSLGVFPNNWKESYVFPVFKKGCKQDVKNYRGIAALCAVSKLFEVIVLEFLRHNLSHVVSDD
QHGFFPKRSTNTNLVTYISKIQRAISDGYQVDAIYTDLSAAFDKINHRIAIAKLRRVGLHGSLLTWVNSYLTGRTMLVKI
SDNLSLPFSVTSGVPQGSHLGPFLFLLYINDVNFLLRCPKLCYADDFKLYAIIKRPTDMEDLQAQVDLFADWCRLNQMVL
NPSKCSTITFTRKRCPTFFSYKILGNPLTRDSFVKDLGVLLDSKLSFKNHISYLCSKASKQLGMIFRMTKYFRDVNCLKI
LYLSLVRSTLEYGSVVWAPYYHNDIGRIEAIQRKFTRFALRHLGECPNYETRCSMLHLDPLSVRREAAKAFFVADLFRSN
INCPFLTSELNVNIRRRVLRSHSFLVIPGARTNYAFNEPVSSMCRVFERCYPFFDFHLSRPRLKHDIXNFLREAYVF
>CR1-22_NV#LINE/CR1 3-2663 [Nematostella vectensis]
LENDLEIICVELSRPGTSKIVVSVVYRPPDADMDFMKMFSEFTRAASRLHRTKYLILGDFNLPKVEWLDGSGYSNTQQES
AFTESLKDNALFQINTSPTHFSPLDNTGHILDLVITNEPELISEIEALCPDSMGFPTDHSIVQLRRFNAPHRTIYNFRNI
DLTALRDEIRESALLVECARNNDIDIAWDGWCRVLFEILDKHVPKIRSRPNSTPPWFDAEVINLLKKKETARRKAKRTGH
QSHQLKYALLRRECKTLIAAKHKLYVEGLSQSLKSNPKKFWSYFRAKTKSNSIPDTVLHNGSKFYSPDEKAEAFNRFFFS
TFTRDDDRFPEAYHDYSSGNSSVLQAIQLSVEEVRAALASVDPRKARGPDNIPSAVLKICADELAPSLCVLFNKSLELGK
LPVEWKKSLIVPIFKKNRKERVENYRPISLLSVTSKVLERCIFARMIDHVSQFLSNCQHGFMRGRSTVTQLLEFLHSVGN
ALDKGQQCDVIYLDFAKAFDSVSHARLIHKLHHYGFRGKVLDWFTHYLSDRTQCTVVQGATSSPLPVLSGVPQGSLLGPL
LFLVYINDLPALLDPGTSLSLFADDTKCYRTISSPSDAVKLQSDLDVLSEWSRAWKLRYNIDKCEVLRVTRKRSPIETNY
SIDGHVLKLTPAQKDLGVVVARDLKWSEQSSIAVSKGYQMLGFLRRNGLRDFDTDARRSLYLSIVRPTVGYASEVWAPQA
ITDMRSVEALQRRATKVILTNSAELTYQERLEQANLLPLSYWHEIKDLVFMYKCLNGHYNIPFSHYFKPLPSLRSSRHRS
SLDIATPLCKTKLFQNSFFNRIPKVWNTLPVDIRTTSSLPSFKNKLAVRYSQALQTTFNAENAVTWKSVCPKCCRARSIL
AQPSCCY
>CR1-13_CQ_pol#LINE/CR1 673-3621  [Culex quinquefasciatus]
QSKPCSALASVTSNTRRDILSVYYQNLGGLNSSLAEYKLACSDASYDLYAFTETWLQSHTLSSQLFDDTYEVYRKDRSSS
TSSKSSGGGVLLAVRKELKPREMKVPDTSEVELVWVILPLTEKSVHICVVYLPPDRVNDSELVERYTQSLLWVVSKLKAN
DSICVLGDFNLSCLKWISDKDGSLFVDVSRSTVSTVTARFLDDHHLANLAQISEITNENNALLDLCFVSNDVTEYYRVSR
APAPLVKDVRHHPPLHLSIFDSAPCKFADSKTAVYYNFKKADYIGMNTFLNNMNWEELLASRNVHSAAEVFSHVLLYAID
QFVPKKCRKPPVTPEWSTPALKRLKSSKRSALKCFSKCHSSFYRLQVNNINNRYKHLNKKLFLAHQIRVQKHLKKNPKGF
WNYVKKQRCESGLPNSMVRDGVDATNTREICDAFRAQFSSVFTHKNLSEQEISNAAARVPESLPIPSNVVISHEDFRTAS
AKLKCSHSAGPDGIPSVVLKSCSNSICLPLTKIYNMSLSSGVFPDRWKESFVFPIFKKGCKRDICNYRGIAALCAMSKLF
EVIVLNFFLHNFSSGIAYDQHGFLPKRSTNTNLVTYVSTIQRAIQSGYQVDAVYTDLSAAFDKIDHRIAIAKLRRIGLHG
TFIDWVYSYLTGRSMQVKIADCLSSPFLVTSGVPQGSHLGPFIFLLYINDVNYQLRCSKLSYADDFKLFTIIKKPSDCRF
LQQQIKVFSDWCQLNQMVLNPTKCSVITFSRKRSPVCFDYTLFENSLKRDRCVKDLGVMLDAELSFKDHVAYMTSKASKL
LGMIFRMTKYFRDIQCLKTLYCSLVRSTLEYGSIVWAPFYANEINRIEAVQRKFTRFALRYSPNQSLDYASRCDFLHLDF
LSVRRDLAKTVFVSDLLRSNIDCPYLVGQLNINIRRRTLRSFAFLTLPFARTNYAFNEPFSSMCRVFNRCYSSFDFNLSR
PVQKLQFLTFLREENPRPLNPLV
>CR1-13_BF_pol#LINE/CR1 1871-4777  [Branchiostoma floridae]
QRAKTLPTDISCLNVLYLNARSVKSVSKKYNKLVRFQNLVATVQPDIISVTETWLTPCVADQELLPQDYTVHRKDRSVTK
PGVTGGGVMLAVKSNILSQRREDLEPMDEVLICDIHPTNHQKIVLIVYYRPPSGDLSVFNANLSSILSCVSKEYSQVVLM
GDLNCPNIDWSKGGSHSEHESRLCDLLNDYALTQINNVISNSHGHLLDVVLTNIPDKCLEIEQVTSEYPTDHAILQFGLI
INRKIKRHEDKRYVYNYKRGNFNRLRLDLETKLHNINDDVNLDNIWERWIFEVTESVELCVPKMCVKRSSSLPWFDGEVR
HARNKKKTAWRLAKRTNSPSHWSKFRKLRNDLQRLIKTKYNSFLNNLGSLVQTNPKRFWSFFRSKTKSKCLPAVLNSASA
VASSAIEKADMFNDYFHSVFTLSNDTLCLPEIAVFEHPCLGNIVFSIEEVQNVLSRLDCSKAIGPDGLSPTVFRECAHVI
APHLTALFNRSLNQGWVPAQWKDANICPVFKKGRKDLVENYRPISLLSIVGKIMERCLFNRIFPHLKHLIYPLQHGFIKG
RSSSTQLLEIYHEIGGILDRGGQVDIIYLDFSKAFDCVSHQLLVHKLKMYGIHSNLLSWFHSYLSCRRQRVMVEGTCSDW
LPVVSGVPQGSILGPLLFLLYINDLPSVVSNKMGLYADDSKCYKHVSTVLDCVSLQRDIDCMYDWSNTWQMNFNPDKCKI
LRISRSRNPITFTYKMNDTVLESVPEFTDLGVLATWNLTFDSHVHNITSRANSALGFLKRSVGFNAPVNVKKMLYLTLVR
SRLEYCSVVWSPYTHNLISSVEKVQRRASKYILNDYTADYKTRLIHCSLLPLSYRREILDLCFLYKCLLGLYDINIDNFL
NLPHPLLRAHSQAKLIPGKCHTTNFQYSYFNRIVYIWNSLPPEIRKLRLNPTFSTNRFKQSVIDHYFSLLATHFDVHLIS
TWTHCSKC
>CR1-15_NV_pol#LINE/CR1 2-844 [Nematostella vectensis]
STVRLFADDTIIYLTVTSEESCKLLQKDLDVLQEWGKTWKMEFNTTKCEVLRIKPKRQFQHTYYLHGVPLKEVKQSKYLG
VQISHDLKWNKHIDDITAKSSRTLGFLKRNLKINSPTLKAKAYQGLVRPKLEYCASVWDPRSRVENNGSYKIEMIQRRAA
RWCLRRYGRTDSVTAMLDALGWRTLEQRRADIRLTTLFKITRGLLSVNTQGLLRPVTRKTRRSHPESFIPLSTSSASEHL
SFFSRTIIQWNNLPALLFNEPCSLPIFKDKISRLTHLPVN
>19848307_Cje#DNA/MuLE-MuDR gi|19848307|ref|NP_612160.1| transposase Tnp1249 [Corynebacterium jeikeium]
MSKNQPRCHCGGEMKRNGTTSKGTTRWRCKQCGASSVKRRNDITNAAVFTQFIEHCTTAISLDDLAKRNGVSRATMKRRF
KWCWLVDVPDPTAGHHKRIYDQVFLDGTYTAGGCLIVAATIDHVIAWHWCKHETTRDYQLLLERIEAPLIAVIDGGQGAY
SAIKKCWPTTKIQRCLVHAQRVVRRYTTTNPRTDAGRTIYRLALKLTRITTLDEAAAWGVQLHEFSTIYREWMNEKTMIK
DPKTGAWTRVWTHHNVRKAYNSLNHLWRSEMLFVYLNPPAGVLAPERIKSTTNSLEGGINAQLKLLARTHRGRSGERQRR
MLDWWLYLKTELPDDPVRIARQSDWGQGQLAKVSTLTQTENQADHETGRPALYDNAIDTDYTHSIGIQKGQI
>CR1-19_HM_pol#LINE/CR1 1541-4474   [Hydra magnipapillata]
SSTLLPANLKYKSKNLHNKKTNYSVNCYYTNATSLDNKMADLISISRTFDYHVIAISETWFRNDSVPNIDGYSLYRKDRQ
DGRRGGGVAIYITDVFNSHEVNQFYTNLLEQVWVSVKFNNKHILIGCIYRPNDASLIKYVAESFKLAHSLIKKPYDDCLI
VGDFNFPNIKWSNDGIESFNPNNPTEYDFWNIFQNSLFTQHITFPTFQTDYGSSNNMLDLLFTYNSNSILNLSPSTILGN
TTKGHFSITWRFLVSELFTESESQSFNYKKGDYDSISNFIASIDWEFLFLHKTADQMFNILISNYRTACTYFIPKINKTK
KKYDPWVTPHIKNLIREKKSAWHINCSTKWENSELKIKYNRLNRSVKTEIFKAKKAHEKEIISKSQNNPKIVYKYINKQL
KIKDRIRSLKDTSGRIIEALPDIVDLLNSQFKSMFTLESSENFPLLNKSGILSECIYNENLDFSISDIIQELADLKPYKS
FGSDGLHPLILKICAKSFAIPLTKIFHKSFNSGVVPTQWKLANISPIYKKKGDKLLAENYRPISLTSVACKIFEKLVKKK
ILKHINDNKMLSANQHGFLYHKSCVTNLIETFDIISSSIASHQFIDVIYLDFAKAFDSVPHNRLLLKLRSFGINGKLLQW
IKSFLVGRKQRVTINNTSSAWVDVLSGVPQGSVLGPLLFILYTNDLAKLTETSEIFADDTKLFSKTLSQSNFVDLQDRLR
LVYEWSNTWLLKLNTSKCCVIHYGRNNPHYNYFLQNNQGINQSLRSSTKERDLGVIFTSNLKWSAHIQTVVSKSLQILGM
LKKTFTFIDEKMALKLYKVFIRPHLEYGVSIWAPFLKADMALVESVQRKATKWAYSLRHLQYCERLKRLNLPSLEFRRLR
CDLIQIFKLIHRFDIVNDKYLPKYINSVSRGHHSKIRREYVLNCLPRYNHLYNRSAKYWNNLPEQITLYSTVLSFKNRLD
SWLWKKFGTNIYKTGCL
>13928075_Cpa#DNA/MuLE-MuDR gi|13928075|emb|CAC37681.1| putative recombinase   [Chironomus pallidivittatus]
MIHFHQQHDSIAEYKIKLKDLKNQVMSQRLPVREIHRCALREMTFDMAGRFCWKKVRNGLQRLRRKQMPSCPDLQTMINL
LETNDFVRHNYGKLRTFDFYQGTINSNILVFANLEVIAALPERIQIFADATFKVCPFNMYQLIVILAEIEGSPRPIIFGV
MPGKKQSMYEAFFDFIKLSVLRHGNKKRKPISAMMDFEKALRNAVKQVFRGIKIQGCNFHHLQALRKRAMKTEGLSTKIF
KNSQHHYILKMFMRISLLPITHIDDGLDQLKRYISSMPDISDDFQQFIIYYEKTWYEVYKKHDWSVSDAFRRTNNNIEGL
NSYIKKLIPRNPSPYKFLDSLLDLAYETSSSLSSAFKELSVTKDRSKLTKKLHETLEKLRNDEISELTFLKIMAKI
>CR1-72_HM_pol#LINE/CR1 770-3874   [Hydra magnipapillata]
QLNAKKDLNHIRCFNYETNNKINLFSGGGQNLNKLLSNKRQLDIEIVNFHERKKCDLSINKEHDTQKCNELMIWYTNATS
LNNKIDELRLQCEIYKPDVICVTETWFKAESDVNIISYNIFRSDRKTHGGGVCIYVKQCINQFETNNLQLNNNFIEQIWT
CICFKNNKMLIGCIYRPPDISHEYNNYVLLSINAAKMSIYQKEYSDLIITGDFNYNTIDWSDNNCPFSATDNESQTNKFI
ECLEDCFLFQCVCEPTFQIANYKSTNILDLIITNDKNKIVSITHSAPLGNVKQGHHLLKCCYLMNDYKFSTEHKKSIRLY
QKGNYELFSCHFNNVDWENGFKSKSINEMYDLFLYHYNYATNLFIPRINYQNRRNRNKWITPELKHKIRTKNNIWLANKR
NGWNEESTKIQYNKLKIRIKNDIKNNIKQFESTLASKFKSNPKLLYKYINEKKSVKTHIRALEIDNGEIINDQFAIATEL
NKYFHSVYVNDNCTNIIEFHNIPSNLLLNTVLITQNDVQTRLQALDKSKSVGFDFVHPYVLKECSSSISYPLYLIFKKSM
ETGTLPDMWKKANVMPLFKKGSKLKASNYRPVSLTSIPCKVLERIIADCIMQHLIKNNLLSKKQHGFMKSKSCTTNLLEY
LDILTDAFHNRTPVDVLYTDFKKAFDSVSHKKLLSKLLTFGISGKLLTWIVCFLANRKQRVVLGKSVTDWVDVLSGVPQG
SVLGPLLFLVFINDLPENFINECRLYADDNKIIAPISSQNDSQLFQNDINKLDEWSTKWKLGLNFEKCKIMHFGSNNNEY
SYFMNNNNTLMEIEKSKLEKDIGVYISSDLKWAKQVKYAASKANSILSLLNNTFKYKDKDLIKTLYCTYVRPNLEFSIQA
WSPYYTKDINELEKVQRRATKMIPELRHLEYKKRLEILGLTTLETRRLRCDLIQQFKIFKGIEIIDIKQNQTMNSICSSG
PAANIRGAKHRMKPELVRNCLKRQYFFSNRVVDGWNSLPAEVVQSTTVKSFKLNLQSVDLEAITNKIKTKKAYY
>CR1-47_HM_gag#LINE/CR1 146-1057   [Hydra magnipapillata]
MSSKVIDATDISFSXKYDFTGFGQGNTNLTKLDKAVFAAFQDMQLAIKLLNEKVIAQENTINELKIQVEKNQNKLESKTF
SDALIGKSTESKQQRQQICSLISTVNKHTQSRELNVIVIGILENNTVEDSKQVMDFFGAVGLENVEIKHIRRLKSSKLKA
TSNNSNSNIIQVSLSNKIEKELVLNTCRHHTIKQYEKVFVHEDRTPAEQADFNAKRSQIVKQNQELKAAGLLDQPFRNVI
HRRTGKIVCIDVIESTRSKQYVFKSATIALKSQRSNINSSNIEGNSTSATITISSTTPNNLKT
>CR1-81_HM_pol#LINE/CR1 849-3858 via tfasty with CR1-69_HM_pol, 3 frameshifts.   [Hydra magnipapillata]
MSHCATELANSSRISCEYLISKSSKPDKIICTKKCRNKPINLNLINGNSNNGCNSNNGCSSNPYSKNSVYLLNARSLANK
LHEFFMFTEANKPAIICVCETFFTSKISDSIVCPKDYSIYRKDRIKIGGGVAIYCRNDIKSEQVQITQTDTDIDIVCIDL
IFSSHNLRLITCYRPPFYSIADVAYIELMTAFIYNLCHSVSQFVIVGDFNFPKMDWLNYVSPNEKCHILFLNLVNNLGLH
QFVQEPTRENNILDLVFSNNISFLSLISVECPFSTSDHNTVHFSININDLDQSNKNIESFYDFVNADIDGFQSYLLNINW
DFEFSFVVFTVEDYWNVFSNHFCNGIHQFVPIRKSNLNKKIKHYPSFIGKMLNRKAFLWKRWSNTKNITHKKAYNKYASK
CKKSLLTYQMRVELKLVKENNISKFFNYVNRKLNNSKSIFPLKDKNNNNKITCSNEEIADVFNKHFGSVFTNDNNYSPFI
NSYVDDSIGMKTVLFPPEAVYKSLKEIKASTSYGPDGIPNILLKKLAHLLCIPLSFIFDASFKSSSLPKQWRQAFVSPVF
KKGATADPNNYRPISLTCTCCRVMERMINVYVIKYLGHHNLISLNQHGFLNKRSTSTNLLESANDWNTALDNHQITDVVY
IDFQKAFDSVSHTKLLVKLASYNIKGNLLNWISAFLTDRYQQVKVGNSISNSIRIVSGVPQGSVLGPTLFLLYVNDLTAI
TNNLDCCVKLYADDIKLYSSYCDMDLSQDLVVALNRLLQWAETWQLTIACSKCFALRIAPPSLCKGIKVNYKLGEYSLAW
SSNPKDLGVTMDCNLNYKKHIFNVIHQANSRAYLILKCFKTRDPCILVRAFTTYIRPILEYCSPVWSPHQIGLIKSVESV
QQKFTKKIRSLRNLSYHNRLQLLGIESLEVRRLKNDLVTCFKIFRKLVCTDQSMFFAIDNNSHTRGHNYKISKQSCRLDI
RKYSFSYRVVDMWNNMTSEAVNANNILMFKNKIKSFDFNKYLL
>CR1-83_HM_pol#LINE/CR1 750-3622 via tfasty with CR1-62_HM_pol, 2 frameshifts.   [Hydra magnipapillata]
KSKNTKKINAPSSLISKLSEITCLYMNATSLNNKFDELIEVINSNKANVVMICETWWNNESVTNINGYTLFRRDRGVGRG
GGVCIYVQNNIKAYEVSEKCLNDPNIEQIWCVIELGSEKVLCGSMYRTGISNISNCINITKSINFAHSMNLLNKYTGILI
CGDFNFNAIKWTEDYYGTLTSETDTPAKIFLECLNNCFMHQNVIKPTFQNNIGNETNVLDLIIAENKNRVYKLVHLPPLG
GINHGHHIIKFNYSHEECIDNIVLIKEKFNFNRGKFDKLNNYFKILNWDNEFKGLEINKCYEKWLSLYEEGCKLFIPIIK
PGSIQINTKPLWINRELKALSKEKRNVWFECRRQKFRDNCLLAKYKELNKVIKKKVNQRIKDFEYDLALNSKFNPKKVYS
YINNKSKVKDNIRAIQLKNGSIETDLKVIANTLNGYFASVFNKPQTLSAPIIDIETQKICKNPDFNASVVEEYLNKLDTN
KATGMDRVHPKVLKECKSTLAKPISLLFNKSFETGKLPKLWLCANIVPLFKNGDKLNPCNYRPTVSLTSVVCKVMEKIIK
DKMMKHLVENKLINKNQHGFVNNKSCVTNLMESLDFITSSIDNGLDVIVLFLDLAKAFDSVDHERLLLKLNALGFKSKLF
DWCQGFLKNRLQRVVIGNNKSEWEEVVSGVPQGSVLGPLLFVVYINDISNKIKSSCKLFADDMKILRAIKNDNDVIELQQ
DIDLLMEWSNEWLMKFNQQKCKVMIIGNSQHKVLMNNTALAYTSMEKDLGVYISDDLEWKHHVNKAVNKANQKLGQIKHT
FKYLDEKTMKLLFIALVRPYLEYAAPIWNPYRQYDKDKLECVQQRASRIKILKGYSYEERLKKLDLLSLENRRRRGDLIQ
MFKYLKGYDIINFYTKPEMLDNGYKTRGHNSKLRRQYTGNIKRHNFFTNRVVNDWNNLEQETIDAVSINQFKKKIG
>9945808_Cst#DNA/MuLE-MuDR gi|9945808|gb|AAG03382.1| Tnp1250a [Corynebacterium striatum]
MAAGPHHIDPTAYLEELLTQASPDLMRQMLGDFINQILSAQADTVCGADYGTTSDNRVNQRNGYRHRLLDTRVGTVDVAI
PKLRHGSFFPDWLLERRTRTERALTTVIATCYLKGVSTRRMNDLVATLGITNLSKSQVSEMAKDLDSMVEDFRTRPLDSG
PYYYLSCDALTMKVREGGRVVKTSVLLATGVNNDGYRELLGMQVATAESTASWTGFFRDLKARGLGDVYLVTSDAHLGIQ
AAVSDVLPHASWQRCRTHFAKNLSSMVPKTQWPTLSAMFHTIFQQPDAEAVWTQAREVVEFCQAKFPHVADYLEEHLDDV
LAFTHTPKSVWTKVWSNNPTERLNREIRRRTDVVGIFPHRDAVIRLVGAVLAEQHDEWIQQKRYMSLTSLEQTKALITAN
VLDADTTTPAGKEIAA
>CR1-27_CQ_pol#LINE/CR1 2-2328 via tfasty with CR1-7_CQ_pol, 1 frameshift and 1 stopcodon. [Culex quinquefasciatus]
DTIVVVGDYNLPHLNWSFDSDINGYLPTNASAEQEIAFVESMLATGIQQIFNLPNCNRRLLDLLxHHVPESTESLTYDFT
RCDFEAVNIALSQINWTGILAHCSLDEAVSRFYDALYDVIQLHTPLRRLHPPSNRKPWWNATLRNLRNRLRKARTRLHKR
RCQPNIAEVRELEELYESQQNAAFSEYIHRIETDVKQNPRSFWTFLKSRKKGSGIPTEISNGCVEANSVEEQASLFADFF
SGVYSTSLPAPCNEVVDHIPTHDLHLPVVHFSIEDVSRALDDVDVTKGPGPDSIHPSFLKNCAASLALPTTIIFNRSLAE
STFPTAWKLASITPIHKAGNVHKVENYRGISILSGFAKLFEHLVHGALYPVLKPIIANEQHGFVKRRSTTSNLLLFTSTL
LTNIEKGQQIDAVYVDLSKAFDKVPHALLLEKLRRYGLPEWIVRWIHSYLADRKAFVKVRCTSSHLLAIPSGVPQGSVIG
PLLFILFVNDLCSVLESDKLMYADDLKVFRSVSSPLDSCALQQDIDRLLRWCTANGMEVNVQKCKIISFTRKRTPLLSSY
RMGQNELERVNTIKDLGVTIDSKACFNEHIALTTAKAFATLGFLRRNAADFVDLFALKTIYCSLVRSQLEYAVQVWAPYY
AVQAERIERIQRAFTRFAVRRLPWVRPQGLSSYDDNCERLKLPALASRRVLLQRIYVFDLLSCNIDCPTLRDKITLHIPA
RNLRNPAPFLEVPGHRTNYGYYSPLSACCRVFNDVADVFVFGMSKCVFKTRIKNRT
>CR1-23_HM_pol#LINE/CR1 1489-4612   [Hydra magnipapillata]
MLYIEEQVASVASTSSNQRPISATYFHPQPELCQTTLAAQPLLTQKSPLPTRRPRPITKAKIKPMQSDTSTVSPSHLCYW
ANNPCSLNNEKRQELFARLSALHKLSRPHVIFFAETWFTDLSDVAVPGYQPHRKDRDNRGGGVAIYTRDDIIVSEVSSTQ
LNSTSIEQIWRKIKLGQESFLLGCLYRPHDENDQNLTQCITSITTAQQILPKINCSAMLLYGDFNFSHTSYEPIEVNSGI
ATVAHVRGERQGDIRFQKCLDECHLTQLITFPTYRSSRHVEPTSTLDLIITNEPDRVIFIKQGDSLGDTPMGQAHCFIEG
QFTVACLNNSPTLPLKPRLIWSRANYAAISAHIAAVDWETVFTGLNANEDYQLLVNVYNEATNLHIPSTTTPFTGKQEQW
VTPELIEAVKAKRTSWAKYINAGRDTHKFLKISHRTACKKVKKMVKAGRQKYEELLVRDSESNPKRLHAYIRSKQSVSNN
ITSLETVNSNITTDTGDICASLNNYFQSVFVLEPEGSMPGFESRTEAVCVIDPAIFSIDIVQKCLNSLDERKSTGYDGLH
PRVLSKCSATFAKPLSLIYKCSFATGVVPDLWKKLNVTPIFKKGSRLKASNYRPVSLTSIPCKIMESILQKRIMEHCVAN
GLISPNQHGFVHRKGCVSNLLETRDIMTEATHCRHAVDVIYTDFAKAFDKVPHKRLLHKLKAYGIQGALVDWIAAWLNNR
CQRVVINSITSEWKAVTSGVPQGSVLGPLLFVIFVNDLPDRITHHMKLFADDSKIIGIIKKESDSITLQDDVDRAVEWSH
IWLLHFNVEKCKVMHVGRGCNKSTYKYSMSNVDGTRRPLEKTAVERDLGVMVSNDLKVRPQIESAASVANRMLGRLKKTF
RSRSFYLWRTLYLTYIRPHLEFAVQAWSPHLKSDIAILEQVQQRATKTISTIKHLSYEDRLQRLGLTTLEERRKRADLIE
QFKITRKLELVSFVVPQKFSKSKDKYILRGHNHKLERQMVKNCEERYNFFSNRIVAPWNALSQEAVNAQSINAFKNNIRK
>CR1-30_HM_gag#LINE/CR1 185-865   [Hydra magnipapillata]
MPPKNSDINMLLQEMQEKIKQLEKKLDEKDVLIKNLEGRVNELENKLDQDKSKDLNNWSEVVKRKVKTNQGQNDIINTVL
HEEKERNKRKNNIIIFGVKLANHDNIDKKKCDEDMVNNIFDSINADKDKIKKVIRLKTRDTSKIPPVIIELDNASDKISV
LKAAYINRNKINEIYFNSDMTESERDLIKQLRSEVKLLNASLNQKDEYYYTIRNFKVVKLIKKPKQ
>CR1-40_BF_pol#LINE/CR1 1-2367 fragment [Branchiostoma floridae]
RDNYLYQYVTEPTRIRENQTPTLDDLVFTKEPDMVERICYEDPLGSSDHVKLTFRCNFCVNPTRRVTKSWSYDKANYNKM
RTDIDIDWDKALSNKKTQEAFSIFQSILTHAVQDNVPSKLIDNSKKNFKPKWMTKKAFRASRKKFHAWTRYLNTKSSQDW
AAYKSARNAATHEARRARKDFERRIAREAKTNNKAFWSYINSRRKVKSQVGDLKNTHGTYTSNDQEKAEILNDQYFNTFT
REDLQNIPEFLQKPLTTPVLETITIEEEEVLEQLNSLRTDKSPGNDSLHPRILKELAHELTYPLTRIFQSSIDESTLPEE
WREANISPLFKKGDKSDPANYRPVSLTSVPCKMLEKIISKRITEHMRTNNFTCDQQHGFSKGKSTVTNLLEALDVWTEAL
SHGLPVDVIFLDYAKAFDTVPHMRLLKKIESLGIKGALLGWIKNFLTCRRQRVSVNGVTSSWKPVTSGVPQGSVLGPLLF
TIFISDIQIQLHNFVSLFADDTKIYAACYNCVSDNHSRCLQADLDTLHMWSVNMQMRFHPDKCKSMHMGKGNQGHKYSLA
DAEGVVHILKDTREEKDLGVLIDNKLSFSSHTQTQVTKANRVLGVIKHTFKYLDMETFLLLYKSLVRPHLEYATVIWSPK
TKRDCDLVERVQRRATRIVESISHLPYSERLKALQLPTLLFRRQRADMIMMYKIAHGMVSLRTDSHCNICDRAMFIPSYA
TNTRGHPYKYQIQDARGPRTNFFPSRCTPTWNGLSVRTVTSSTVNTFKGRLKEEWKHHPNQFEYTFSY
>CR1-36_HM_pol#LINE/CR1 1676-4627   [Hydra magnipapillata]
NEKSQHSTHDRFHIIKNLSSPTSQSNASKLLLNCFYANATSLNPNKLTELELATSLYDYDTIFITETWFNESSAPAIPNY
NLFRKDRSSRGGGVAIYVKNSIIANEIDYSQLHIGFQCNFSEQIWLELKLPQESLLIGCIYRPPTNNVLAFNEIVKAISY
AKSAVENKKFNGLIITGDFNFPDVIWHDDWTNTTGAETSFGTKFAXTIFDLHLHQHVINPTFIQANGLFKNTLDLVITET
TERLTHITIGPPLGSASQGHCTMTWQHQLAKNVCNSPRFNISKFIYRRGNYANLNEKLSQVDWVSLFKDRYADECYQIFC
DNYIKLCDKFIPRVTSKPAKHRQPWLTSELFLLIKRKKKLWYLNRNSKWRIIPLVKEYNQTRNLVKKTSCTAIRAFEHKL
ASDKWNPKRLYAYVNNKRAVSNQITSMCSPAGEISSDHASIANILNSQFQSVFTIEPSDQQLPPFVKRTTALISSVIFSY
DSVHKHLSALNANKSTGGDGISPFVLKACADAAATPLAIIFQKSMDQGVVPKAWLSANVTPLFKKGSRLDPENYRPISIT
SVPCKIMEKIVKEKIMQHLVAHKLIADCQHGFVNKKTCVTNLLEAMDFLTYNVSRKLPVDVLFLDFAKAFDKVPHRRLLQ
KLESYGIEGNVLNWIKAFLSNRSQRVILGNTSSTWVKVTSGVPQGSVLGPTLFIIFINDLPEHINSENLCKMYADDTKIL
SVVKTTEDKARLQSDIDSVVTWTRTWLMELNIKKCKVMHFSKYNVSPHIYLMNEYDANGSVTRTVIESSTSEKDLGVQIS
NDLKYERQAQIAAAKANKVLGTLKNTFISRDTKIWKKLYTTYIRPHLEFAVTAWCPHLEKDINVIERVQHRVTKVPHEIK
RFDYETRCIKLGLTSLLNRRLRGDLIQKYKFENSIDSISWHIDPPNIPPSYGHRKRFHREMDNNCLVRYNSFNNRVAHPW
NALPNVVVSATSVDRFKAKFDQL
>CR1-2_NV_pol#LINE/CR1 13-3447 [Nematostella vectensis]
MAGPFEAPLEILFLALLLSSKLDFDSPENFLIHPGLIYQQYVGQEAFLTSFSGRIRVNGRPGSAILDSPPTRARLLCGLL
LLCGDISLNPGPAWKYPCGLCKKPVKSNQRGLQCDSCNIWNHAKCMDISIPSYESLANSSCLWLCPKCDASNFSETLLSA
STLELSNSFNFLPSQTSSPVAKTTPRNSSTSSVLEHARKSSRPRHKQGLKVFNINFQSLKNKNCEFQAFLATESPDIVIG
TETWLNPSVKTCEFFPSNYSVFRKDRPDGYGGVLLAVKDLSCHELYELNSDCETVWIKVSINRRKHVYIGAFYNPDSSCE
ALDELDRSLSKLQRKSGNSVIYLGGDFNLGGDICWETNTIARGSRHVTACEKLLEMCSIYSLEQVVDKPTRGDKILDLLF
TTNSTLVDSVHVKPAMGDHGCVEIQTLVTPKLARPIRRKIFLYSKGNFVDMKRDLLEFSSVYFTNFTVRSLQENWDMLKG
KLSSLMEEYIPAKMSSSRYNLPWFTHNLNKLKRKVQRLYNTQKRTGLESDKRKFRQTRKAYRYKLNKSYGDYINNLLGSS
QREQPKKFWRFVKSKRQDNMGINLLHNQHNIAVSNSLDKANVLNGYFFSIFTKEDSSTAPSLNPNSSSPEMGKIIVTSNG
VQKLLNSLDSNKAGGPDKLPTRILKELSQELAPLYTQLFQQSLDQGKLPMDWKIANVVPIFKKGKRSSPNNYRPVSLTSV
TCKILEHVICHHVWQHLEQHGILSDFQHGFRKRRNCETQLIITCHDLVSAINQGKRVDAFILDFSKAFDRVPHRRLLYKL
SYYGIRGSLLTWMEDFLTQRSQCVTLEGATSSQCSVTSGVPQGTVLGPLLFLLFVNDLPLNISSTIRLFADDCLLYRTID
GSNDSLALQNDLDALNRWERDWQMAFNVEKCHTMCFSTSRAKIPDHPYILNNRILERVYHHSYLGVLLSGDLKWDKHIAQ
ITSSANQTLGVIRRNFRTASVDCKSKLYCSLVRPKLEYANSAWYPHLQKDKHRLDMVQRTAARVCYNNYLREPGVVTNML
RELEWPSLEGRRTLSRMSMFHQVVYGTVDIEGEPFLVPMDRPSRNGNSKRFHRTHSKCNQHANSFFPWSINFWNNLPGSI
TNIKEKGKFKEKLQQHLIDNGQWF
>46320998_Bce#DNA/MuLE-MuDR gi|46320998|ref|ZP_00221379.1| COG3328: Transposase and inactivated derivatives [Burkholderia cepacia R1808]
MPRKRKEEVTIEPGKGLNLDPELIKQLVPGTLDRASINEQFAALKKAIFERALGGELTHHLGYEKGEAKPAGRTNHRNGT
SRKRIATDNDLLDVEIPRDREGTFDPVLIAKGERRFTGFDDKIIAMYARGMSVREIQGFLLEMYGIEVSPDFISTVTDAV
IDEVREWQQRPLEPMYPVVFFDALRVKIRDEGVVRNKAIYLALGVRRDGTRDVLGLWIEQTEGAKFWLRVVNDLKLRGVQ
DILIAVVDGLKGFPEAINTVFPETTVQTCIVHLIRNSLDFASWKDRKSVAAALKEVYRAPSAEAAAVALDAFDTSPWGTK
YPPIAALWRRAWDQVIPFYAFAPDIRKIVYTTNAIESLHMQLRKIIKARGHFPSDEAALKLIWLALRNVVAKWTGSRHDW
KSAMTQFALLYPERFNIGI
>29826765_Sav#DNA/MuLE-MuDR gi|29826765|ref|NP_821399.1| putative IS6120 family transposase [Streptomyces avermitilis MA-4680]
MQQCPGATRLLTVVNEEGTTSHGSLIDDIVREGARRMLAAALEAEVNAYISELADQRDEREHRLVVRNGYHQARKVTTVA
GAVEVKAPRVNDKRVDESTGERKRFSSAILSPWCRKSPKVSEVLPLLYLHGLSSGDFVPALEQFLGSTAGLSPATVTRLT
QQWQADHAAFGERDLSASDYVYVWADGIHLRIRLREAKSCAFVLVGVRGDGTKELIAVKDGYRESADSWADLLRDCARRG
MRAPALAIGDGALGFWKALAEVFPEARLQRCWVHKIANVANALPKSAQPGAKKALQEIYNAEDRDHALKAVAEFAKTYGA
KFPKAVKKITDDVDELLAFYDFPAEHWVHLRTTNPIESTFATVRLRTKVARGAGSPAAALAMVFKLVESAQQRWRAVNAP
HLVALVRAGAHFERGLLVERPTAAA
>CR1-2B_AMi_gag#LINE/CR1 794-1868 via tfasty with CR1-2_AMi_gag, 1 frameshift. [Crocodylidae]
MRMGTRRTPRVPSESAASPSGTSEASTQTEPMVPGSTQTEPLALGCGGCLARFQAHGTGSMATSPCEVCSTLESLGRQIE
ELQAAVQRLRAIRDGEQEIDSYCQALHPLEAEGRPRSPSRTREDSGISHTVQPGGWTKVVKGPKARRTKVPSPLGLCNRY
EPLAAPVEPAEMPAPAGKGGSPTPTLPKTKRRVVVVGDSLLRGTEGAICRPDPLAREVCYFPGARIRDIAERIPKIIRPS
DHYPMLLIHVGTNDTARSNPSRVMRDYRALGGGLGAQVVFSSLLPVAGHGLRRERWVEVVNQRLRRWCHREGFGFHDHSP
LFGERGSGLLGRDGLHLTPLGRRLFSARLADLLDRALN
>29376391_Efa#DNA/MuLE-MuDR gi|29376391|ref|NP_815545.1| transposase, IS256 family [Enterococcus faecalis V583]
MARKKRNPDAEKLAESILNAYQPESVDDMQDALKDVFGPLFEKMLQGELNNHLGYDAHSKEPKEHDNRRNGYGTKTLKTS
FGEVAIDVPRDREASFEPELIPKRKRDVSDIEGKVLSMYARGMSQRDIAATVEAIYGFDISHEMISDITDAVLPELEEWQ
ARPLAKCYAFLFVDCMYVTLRENYEAKEYAVYTILGYDLKGNKEILGLWLNQTESKNRWMQVFDELKARGVEDVFFISMD
GVSGLEEGAKAIFPSVIVQRCIVHLVRNALRYIPSKDYKEVCRDMKKFYGASSLNAAHAAFGSFQNRWSHYSGAVDVWKR
NFAHVEQLFDYGSAIRKIMYTTNAVESVHSSFRKVTKKGAFSNENALLKLLYLRTKELHAKWSGGRIQNWAMVLKQLMIN
ETFSSRMKSMRFTFRNNGRFIQLCVRSKFI
>CR1-2_DAn_gag#LINE/CR1 539-1522  [Drosophila ananassae]
MDFKLVCALKSCNKTISSSQPTIHCWLCENVLHAKCAGFTASVSDAISRRSGLHFCCDGCRAVQDEMRSFMRQTKSGFKE
LISGFRKINDQLCALDTQFSSLQLLNESPKRKKSAFSDVLGSNNLQPAQPTTMQPLISLATPRAGPEKNSASECLGLNEQ
LSDMSSVASLQVIPDPIIQTPVTVTKQGNKPSGPPVRTDAAVLVTAAPKPLQVIPPSKHIFVSRLAPDTSEIDISAYIKA
KAKADIKVVDITKFKYSYTRHTSSFKIRVPLQMFKTICSASFWPENIFVQEHQPSTVKKKITKPVGVKLPHVKATDQPST
SSSSISKN
>CR1-2_Crp_pol#LINE/CR1 1446-4223[Crocodylidae]
LGSSGEGEDEGGGXIGLPDQATPTSTAQPRPTSETYTQVSDRGQGNAXXRGPVHTSTGGLKCLYTNARSMGNKQEELTLL
LADTNPDIVGITETWWDSTHDWAVNVKGYRLYRRDRTGRKGGGVALYIKEEYTSSSISKESEEGHSEVLWVRVQGSRGER
DLTVGVYYRPPNQGEELDQEFLGQLTEVVKSKDVVVMGDLNFPDICWEEQSARSDRSRRFLARVQDLHLTQEVHSPTGGD
ALLDLVLATGDDLVRGLRVLDHLGDSDHRLLEFTIQRKVAKACSKAAALDFRRADFNELRRIVGEALRSRRGGEPGVQGE
WSLLKETILQAQREVIPTRIKGSRRAHKPPWLTKSIRECLLAKREAYTQWKGGAITRDDYTAVARGCRGAVRKAKAEMEL
GLASRIKDNKKSFFKYIGGKKKVPGNVGPLQDTLGNLVVTPDDKANIFNDFFASVFLSRDRNSHPPAGPPSGPRGGAPRP
RVSEELVRELLEGLDVFKSAGPDDLHPRVLRELAEVIAGPLARLYEHSWCSGVVPEDWKRANVVPIFKKGRKEDPGNYRP
VSLTSILGKLFEKIILAHIHEGPAGEXMLRGNQHGFISGRSCQTNLVAFYDQITKSLDAGVAVDIVFLDFRKAFDTVSHP
VLIKKLGDCGVDTHTVXWVANWLEGRTQRVVVDGSFSTWRDVGSGVPQGSVLGPALFNIFISDLDEGVKSTLFKFADDTK
MWGDVGTLEGRNRLQSDLDRLQGWADENRMGFNTDKCKVMHLGRNNRHHTYRLGNSLLVSTEAEKDLGVIIDSKMNMGRQ
CGDAVRKANRTLSCIHRCISSRSKEVILPLYAALVRPQLEYCVQFWAPHFKRDVDNMERVQRRATRMIRGQQGRPYEERL
RDLNLFSLHKRRLRGDLVACYKLVRGDQQALGESLFPRALPGVTRK
>CR1-2_DEu_pol#LINE/CR1 1400-4243  [Drosophila eugracilis]
ANPRKKLTSSLILSYQNTRGLRTKLPTLFSESFSFASQIIVFTETWLVSEILSSEIFPSRYVIYRLDRSLGSGGGVLISV
DSKLVSEEINLQFGDIEFICVKLALPGRFLFITCSYIPPKSDPSTYELHLAAIQSVFTLLSDVDQLVVLGDFNIPQINWS
KNENSLALTPSSHNDFIAGMLDMTLEQINHVKNSLGRLLDLCFISDSDSVYISRVPPLTRPEDLYHPTLELAIDVGPLQT
TEPTRAVKKVRCFSMSDFLKLNILISDFDWSDLYACNDMTSALNIFYHALNLIFDICVPMRYPSRTDNPPWYTKGLSTLK
NIKFRLQKKYLKTRTPLSYSQYLIARSNFTVLNAQCYKNYLARCRTQFTQDPKQFYNFVKTKRRPKTFPSALTFENSTAR
TDQAIADMFAKFFQTTYSPSTTARQPYVYGVPQSNLVTRPFLSKSGILKDLQSIKPTYSPGPDGVPGCVLRYCASSICNP
LLKLFNLSLETTTFPPIWKESFIIPLHKKGKTSDAGNYRGISKLSAIPKLFEKIIVPHLQHQCRSIISPYQHGFMARRST
TTNLLEFTSYVITGFRKSLQTDVIYTDFSKAFDSVNHSLLVHKLDLIGFPCDLLKWVESYLTGRTQRVLFKDVLSGPIYA
SSGVPQGSHLGPLFFTLFINDLPIALTNSFILMYADDVKLCIQYNDACYQRKLQSDLNNFQFWCSANLLNLNGSKCKVMT
FSRSKPLISTYTLCGVTLDRIKLVDDLGVLLDAKLTFSDHIFSMVNKARGVLGFIKRWSKEFNDPYVTKTLFVSLVRPIL
EYGSCVWNPQYAVHQDRIESIQKSFLLFALRGQNWDANLHLPSYKSRLLLINLPTLANRRTMLGVVFINNLISGDIDSQA
LIGRLNINVPARPTRNYIPLSLRHCSSNFALHEPFRVLCSSYNTLYNIISNTSPTNIKIVLLNHLAHI
>CR1-2_DWi_pol#LINE/CR1 1472-4312  [Drosophila willistoni]
LITSSLCIHYQNVRGLLTKLSNLFCDSQTFSADILAFSETWLNSSVLDNEILSNNFISYRLDRVGRRGGGVLIAVNSNLC
SSVVPIDLPLGVEFICVEITCSNFSLYISCSYIPPASDITTYMHHADALQTIFNRLKDRDFLIVLGDFNLPNISWLVDDN
LSFLIPSSQHVFLDSLLECPLYQLNSFLNSSKRILDLVFVSDPTVSAVSRTQPLVKPEDPYHPTIELTISYNSVTNSFNN
IANSRRRCFRKTNFNLLNSLIFSFDWSFLFECCDIDRAVKFFYSALNSLIDKCVPYVNVSTVSSAPVWFTRRLSNLRNIK
SRYFKRFKKTGSRLDYANYCIAKSQFCLLNTQCYNNYIVRCKVEFYKNPKRFYNFVNSKRRSNVLPSTFRLNDQTANNDS
DIADLFAKFFQSTYSTTVSEPTPYPFSIPHLNCMFFPSITEDCIISSLSSMTSSFVPGPDNIPSCILKMCSNSLSKPLSR
LFFISSETCTFPDIWKESFIIPLFKKGSKSDVSNYRGIAKLSAIPKLFEKIITSSLQHLSRSTISPCQHGFMKGRSSLTN
LLELTTLVHHGFRKKCQTDVIYTDFSKAFDTVDHSMLLAKLNIMGFSPKLLAWLKSYLIGRTQKVSFRSSISKTVRVTSG
VPQGSHLGPLLFTLFINDLPLALAHSRVLMFADDVKICYSYNDPSFQQYLQSDLDAFCDWCHVNKLHLNASKCSFMTFSR
LSPFLAHYSVKSVLLDCVPSFKDLGVMFDPKLSFNVHISSIVNRACSLLGFIKRWAKEFDDPYVTKVLYTSLVRPTLEYC
SPVWNPQYDVHQRSIESVQKQFLKFALRGLNWDPSLRLPSYSSRLLLINLPSLYNRRLVFGILFLHKLVNGEVISTNLLD
TLYFCVPSRRTRNFFPIHLSRCLTNYSLHEPFRVLCQSFNNLSHLISPHLSVTSLRAILFNHLQRNQ
>CR1-2_DRh_gag#LINE/CR1 395-1411  [Drosophila rhopaloa]
MNNKNLVCFCKKCSLVIRADQSNMTCWLCENMVHTKCAGFTGRTSDDLSKGPNLQFCCDACVEVANEMKSFMRQTKGGLM
GLISCFGVARDSFRRADDLLSALDSQFNSRKLLEESPKRKKAAGGKEQKGNTPQPKSKEQQSIPADQQLISANPQMLLRS
AAKKDSVSEQSVTECMQPGTSKNSDLSVVVSQLVDPPISQNVASPPQGTTESGQPAQVGFAETMSAPPKSLSVVPLKKQI
FVSRLSPDQTSSDVLSYIQDKTKADCNSVKVEKFKFSYARDISSFKITVPNELFEAICSGDFWPDNMVVKEFEAKIKKKG
PVGVKLPSRGQTSVPISKN
>CR1-3_DAn_gag#LINE/CR1 480-1448  [Drosophila ananassae]
MEYNVVCSLKSCNKPISASQASIYCWLCESVSHAKCAGLTASVSDAISRRVGLHYCCSGCRAVQDEMRSFMRQTKSGFKD
LIVGFRKINDQLSALDVQFNSLQLLNESPKRKKSATREVAAPVIAEQLDPPAIMQPLISLATPRAGTVNEKLAPEFTVAE
QNLSALSSMASLQVIPRNTLELTPIASTRNGNPPPGPPERTDAAVLPTVAPKPLQVIPPVRQIFVSRLAPDTSEIDISAY
IKAKTKAVIRVEDIRKFKYSYSRRMSSFMIRVPVPMFVTICSPGFWPEDIFVQEHQPSKVKKKNSKPAGVKLPTSVQSDS
SKN
>CR1-6_NVi_pol#LINE/CR1 618-3438 via tfasty with CR1-3_NVi_pol, 1 frameshift. [Nasonia vitripennis]
MYGKLHLFKAKLFQLSILPDIVVITETWLQDCVLSSELGMQQFDVFRCDRDLSSHGVQRGGGVLIGVKKFLQAELVHVDN
VIEQLIIRISLPSHKLIVAASYLRPDSSVQVFSSHVSNLEDANIKFPDHRMVLLGDFNLHHITWSSDTSAYSPMAYLSPA
LRSAADIISGYSTSMDLVQHFKHHPKKGYSLDLLFAQKDFISPMDFNEDILPCDDHHVPGMFSCNISVASSASCNLKFCK
RKFYSADFEAIRARLSEEDWATVLYSFSDDPDSGIARFYEILNGVIDQHVPITKQSLSSYPKWYDSELINAICKKKIAHS
TWKSSNSKRDEIEFKRLRAVCVRLSRSKYRAYISSVELGLKRNMRTFWSFIKNLRNDSSIPSKMYHGPTRAASDVEVSNL
FSGYFSSVYRTDSLREFESNDEPLVSLSNIVLSIETLRSIVANLDDNINGGPDGIPPYFIKRCWSLLERPIVHIFESMLR
SGYFPTFWKYSFVVPIYKNGDRHSVANYRPISTLSCIPKILDAYLASELSNSLLSKVAQQQHGFISGRSTLTNLLVFNDF
LSESLCNHEQTDAVYTDMSKAFDSVNHSRLISKLFNFGIRGKLLDLLRSYLTNRSQAVRVNGAVSSPVDVPSGVLQGSHL
GPLLFCLYVNDLVPKLSAAQVLLYADDIKLFMRVRSADDSVKLQRDLDTLVAWSVENGLSLNANKCSVISFSRSKSLLLF
NYCINGSRLQRVDVVKDLGVIFDSSLTFITETDVVVSRSLRMLGFIKRSTVDFSDPSAIIYLYKTLVLPHFLYCPQIWRP
HSQYLINKLESVRHSFLRYIAFKMGKPLHRFCHDYSEIAEGCDIPTVDSTFYLHDCVMTFKILRGLTNCERLSDLFVSRT
VAYPLRNLRDLREGTFSSNLGFYSSINRMKRQWNSIPNNVQSKESVGQFKSSIRSLSLAY
>24372299_Son#DNA/MuLE-MuDR gi|24372299|ref|NP_716341.1| transposase, mutator family [Shewanella oneidensis MR-1]
MPVSDQLIDQLLADYESPQDLLGEQGILRQLTKKLAERALEAEMELHLGYAKHDAAGFNTGNSRNGKSRKSVRSIHGDIE
LETPRDRNGSFEPKLIKKGEKQLGGFDERIVSLYARGMSTRDIQAHFEETYGVEVSPTFISQITNAVLDEVKAWQLRPLA
PVYPIVYLDCLVVRSRDSGSIQNKSVYLALGVNTDGEKELLGLWIAQTEGAKFWLSVMNELKNRGVEDIFIACVDGLKGF
PDAIEAVYPKTQVQLCIVHQIRNSLRFVSWKERKAVAADLKTIYGAATLQQAELALEQFAKTWDKQHPSISKSWRENWTR
LSVFFDYPPEIRKVIYTTNAIESLNASLRQVTKTRRSFPSDDAVLKLLYLALHQIAKKWTMPLRDWKPAMTQFMIMYSDR
VSL
>CR1-7_BF_pol#LINE/CR1 635-3991  [Branchiostoma floridae]
MHVQTCPWSCTRLVNEVLRSNSQMNTRLFRNLPFHSFCLLTLYYIAVFISVFISVNMSNSKLLNSTKYPCGTCDRTVSWS
DLGVECETCGRWYHLSCQGIQSSSYDRLGQSEVVWNCDICVPTCTRNSTPSPTNSTLNSESDFRSSHSSTPTNSTLNSES
DFRPFHSSTPTRVNQQNKRSNRPLRFLNINFQSIVGKRAETMNLIDSTKPDVILGTESHLDDTIFSSEILPPGFNIFRRD
RNRNGGGVFIAVADNLPCHEVTELSVPECEIIWVKIRVKGRKHILAASYYRPHTRDSLDQFETSVQRAVTTTSNATLILG
GDFNFPAFDWNTKQLKVTSNYPGLHYQFLDFIQDMGLDQMVTLPTRGDNTLDLFLTNYPSLVPRIECLPGISDHDVVFME
FDINPVYKRQNRRKVPQYSRADWPALHAAAADLSDSIVKDFGKDKNTEHIWCAFKEGLSSMSQQHIPQKTLGGKNNKPWV
DHTTSRLIRRRDRLYKRWKKTGNTKVREQMKALKHTIQRRLRRAYWSYTESLFTNQDDPHAVPGANMKRFWTYIKSQRTE
AASVAPLKVEGKLVTEAVDRAEALNKQFQSAFSQKVTFTVSEFQNRTNLFQQPNAPTCSSINISEPGVRKLMQNLDPKKA
PGPDGISPRLLKELAVELAPALTLLFQSSLESGVVPRDWRTANVTPVYKKGERYRPENYRPISLTSIPCKIMEHIVTSTI
MSYVEENEIICKEQHGFRRRHSCESQLLGLVDDLSVDLEQGRQTDALIMDFSKAFDKVCHSLLIHKLNYYGITGSLQTWI
QSFLTDRRQAVVVEGSISSFVPVDSGVPQGSVLGPTLFLLYINDLPTSLSSIARLFADDTLAHKTISSTRDQEVLQEDLD
RLAEWEQTWMMSFHPDKCQALHITRKRVPQTMNYKLHGHTLVSTKEAKYLGVTITYNLTWCTHIANITNKASRTLGFLRR
NIKVGSKKIKNLAYVTLVRPLLEFASPVWDPYTAKDIAKLEAVQRRAARWVSNRYRRSSSVSEMLHDLEWPTLQERRRRA
RLVTFYKYHSGDLAINCKTSPAPQARSSRSTHPAAYKVPTSRTQYRQNAFFPRTXRDWNGLPAEVALSPSLSMFKSKI
>23928448_Zma#DNA/MuLE-MuDR gi|23928448|gb|AAN40034.1| putative MURAZC [Zea mays]
MKKPHMGAKELQTTLQDTFGCTIAYDTVWHGKEKALKELFGSWEESFQLLWRWREAVMQKSPDSVVELDVKMDQGRPFFS
RFFCALGPCISGFKGGCQPYLSVDSTALNGRWNGHLCCAIGVDGHNWMYPVAYGFFEAENTENWTWFFHQLHKVVGDLPL
LALCSDACKGLKNAMNNVFPHAEKRECFRHLIQNYIKLFGGSGYMYPAARAYRREVFDHYFSSIQEIPRVSSWLNEHHDY
LWYRSGFNTDIKCDYMTNNIAEVFNNWIKDWKDLPVCDLAGRIREEIMEMFHRRRRIAQKLQGRILPSVLHILHDRTRGL
SHLSVRKADNYIAEVRDNNDVHSKHIVNAHLRECSCKEWQHTGKPCNHALCLITAQEFRDVRMKEFVDEYYSVSHFTTAY
SRVVPPIGDKSFWPEVPFAKEVGAPIGKRAVGRQRKNRMKGCLEGGSGKKKVNTDNGKKSIRGKIKCPNCGELGHRKASY
KCPLNGTKKRKRKPRKNSTKGWFPKDVPESSQAGVQENEANEDLVERSHLAIIPANEDLVERPSSPPEERVVRVLVKKIT
PRKKNV
>CR1-10_AMi_pol#LINE/CR1 18-2942[Crocodylidae]
LRLLGDRDTQIQTCPGTNIQVSPVDRDTGRATFVGAEGIVLHQQDRKTRASVGGLRCLYTNARSMGNKQEELALLLSSVH
YDLVGITETWWDSSHDWSVAIEGYTLHRRDRVGKKGGGVALYAKEQYTSLEADIGSKNGQLETLWVKLWGGGGERDLTVG
VYYRPPNQGEELDLEFTRELTEAAHARDMVVMGDFNYPDISWEEHSAKLDRSRSFLTCVEELFLTQEVHGPTRGDALLDL
VLAKGDDLVTDLNIEGSLGDSDHETIMFTVXRKADKSDSRIEVLDFKNANFNKLRSLVGQVLRDQGPKAKGVHEEWLFLK
DTILEAQRKSIPMRRKGNRRAGKPSWLNREITVLLRKKKEAYKQWKLGAGPKEDYSTTARICREQIRQAKAATELRLATG
IKDNKKSFFRYIGNRRKTNGSVGPLLNNSGELVTGTQEKAELLNDYFASVFHRTKGKTTPGRVEDEHGRNNRLPTIAVEL
VYDQLIKLDVYKSAGPDDLHPRVLKELAEVIAEPLAKLFHNSWRSGEVPEDWKRANVVPIHKKGRREDPGNYRPISLTSI
LGKILEKFIKESICDKLAEGKILNDSQHGFVAGRSCLTNLISFYDQVTRHLDTREQVDIVYLDFQKAFDLVSHDVLARKL
EDCGLNSETVRWVRNWLQDRTQRVVVNGSVSSWREVGSGVPQGSVLGPVLFNIFINDLDVGVKSSLAKFADDTKLWGSVV
TLEDRLQLQADLDRLASWADRNLMKFNVEKCKVLHLGTSNPQHTYRLGGTKLTSTTNERDLGVIIDHSMNMSRQCDAVAS
RANNTLACINRCISSKTKEVILPLYSALVRPQLEYCVQFWAPHFNKDVDKLERVQRRATRMIRVLKGKPYEERLRDLGLF
SLRKRRLRGDLVAAYRYTRGVHQGLGEQLFTRAPEGKTRSNGHKLLEDRFRLNIRKNFFTVRVSRLWNKLPPEVVQSPTL
EIFKRRLDSHLAGVT
>CR1-3_NVi_gag#LINE/CR1 165-1358 [Nasonia vitripennis]
MSLNGSFLSAGSLDGRVMPIDDSLVTKRMPRLSVCVGCEYENCDCFGQGDINCVKCNRRFHEKCAGLSGCVKCSDDLDKV
VCNLCLGPSTSVSSAHLSIGGSRVPASVPVSVAVGTSESAAAFPAPAQTIVSDDKFEELKSLLQGNYASIRESLTGIDDR
FARLDSQLEQDRTERRAIRAEVAKLDARLRALEERPAAVLAGPVVVSGDGSAPLPDGRXVQALASLDSASEVQDQLYRSR
NLLLYDVPAGGSDSDLATVKEILGKISSLDLDKISVRRFARPTSRGTFPPLVVRFSTSFEVIRMITYRSLLPSGISVAAD
LTPAQRARRRQLLEEASKHNRDHPDKPKTVKFVRGSLALIDAKQKTGVFSCQQKPKLIVVLRIKPSSPSTTKMLTHW
>CR1-3_DWi_gag#LINE/CR1 457-1461  [Drosophila willistoni]
MSVCCKYNCNNPSKTSEDFLYCWLCDNVMHFKCAGYTVKVRDSIAQGGGLKWGCDSCRGLELEMRSFMKRTGDAFKTLSA
GVHKLQEELLAMEVQFRSSKLLIESPTRKRARFQGASLSPSAHSSLPVPAFDIDPMSPNAQQLISFRSPALAGVESLPIS
PGDSIPPTNTISVVVSEPSGQTSVSRNIANKVVTRGASKVLAASAAAASAVAATAVPSIPSSLVVVPPKKQIFISRLDPN
TTSEEVIAYIQGKVQATNIAVEKFRFSYTRDISSFKIGVSPDLFGQICHKDFWPEHLVVKEYTIKKKNRPPISLLPASVN
NVPSGSSAPVGESKN
>CR1-4_DK_gag#LINE/CR1 52-933  [Drosophila kikkawai]
MLCAECNLEVSASQLRSTEAVRCASLCRRVFHAACVDLPADAIKLLLNPNILWQCDGCVVANDSHSKIDELDSKIKNLEC
LYQHLNSKFSEAFPTKGDSIEHTNNVTVRPSRRQAANATVAPQSYAAAASSSSVQGQGLRPPNAERDGFVKVLHRKRKNN
NNNKKTVVGVASASDXLQVLPIVKYLHAGKFKAATEPEAVLNYVSSKLNVDAKAFSCIKLIKKDVDISTLKFVNFKLGVP
DQHYKAVFSNEFWPCSVKVKRFVHRERTNKEDTIIELGGPARTSTPTHSSKNPQ
>CR1-6_NV_pol#LINE/CR1 214-3660 [Nematostella vectensis]
MKFALLVLSISLLLRGFYHQHFTSTTLKLKPTSIQLPSSASIACFFTSKQHTGSVFRPFPAPLTSSSCWLSILLVISSNG
SILNPGPVKFPCECCSKPTKSNQLAICCDDCDTWYHIKCLRMPMHIYQGLNNSHTTWICCNCGLPNFSSSLFSRSLDISS
SNSFSLLESTSTASPGLDPTPSPIASSSPVLTPSPKHKLRCMSINCNSILSAERSALFASLVSHHNPDIIFGCESKLNRD
VPSASAFPQGFTIYRKERQDCGGGGTFIAVRSPIVSHPLDNISTDPEDESLWVSIQISRRKFVHLCSFYKPPLAPASRID
LLSQALLRVFDKQKKSHPNVVIAGDFNCGDINWKVSPPVITNPATASLMNKLLDFIDDHALTQYVSDPTRPASLKTLDFV
CSSVPSLVSDVSVHPGMSDHDLVHFYINTNPRRATRTPHKVYLFDRMNLEGLQHDMDLLNQSFMVSPLSRSVEENWSIFK
TGIKSAIDANVPHKMTKRKPDVPWLNRALKRQIRKRERLLRRAKHSGDKSPSSPAWLAYRKYRNKVTKALKEAHNHHLNE
VVGGSLVSNPKKFWNYVKSRRSEVSDIPSLRSNDGVSISPRDKAQVLNKQFQSVFTVDDGVLPGLGPSPFPHISDIIFTP
TGIKKQLDNMQTCKASGPDELPARILHDLSNYLANMLCIIFQQSYDKGTLPLDWSTAKVVPVHKKDNRDNPGNYRPISLT
CLSCKVMEHIVLSHLNKHLSAFNILSDLQHGFRSGFSCETQLILATHDWASTLNSHGQVDAIMLDFSKAFDKVSHAKLSH
KLHHCGIRGKTLGWIEAFLNNRNQFVVVDGSHSSQVPVTSGVPQGTVLGPTLFLVFINDIVDQCSSVTRLFADDTVVYRT
IRSPADHVSLQHDLCNLEAWARTWQMEFNASKCQLLPITLKRNSSLFNYSLGSQLLNSTDEHDYLGIRVAHDLRWSRHCC
KVSLKANKTLGLLRRTLKPCSQSVKERAYFSMIRPVMEYASPVWNPFTDRDINKLEQVQKNAARFVTGTYDPRASSSDLV
KSLNWDSLEVRRQLAQLCLFYKIRNNLVNIALPQQFQPNLRPSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVV
ESSSIDSFKSSALPVLRSLRIPGHLRRL
>CR1-5_AG_gag#LINE/CR1 228-1364 [Anopheles genus]
MEDVCYACSEALGPVEGSITCLYCEGTYHLACTKVPISVIDEVKRMASLHWSCIGCTNAIGNPRSKAIKGMGMQVGFQAA
LTAAVDAMKASLVPPVIQEIRDGFAGIATAHSASLQHSNQLLPDALPNGKRRRLFRDAVASSDAVFVDSAAISNVTNTNN
THRIDRPSLPPIITGTNTTSASIPTVSQTPRTDYLWLHLSRLAASVTIEQVVSLVCLQLDTADAIAFSLLKAGTVPSPLS
AVSFKVRIPAALRSKALNAASWPVGLGVREFISLPPRSLHSRTQHTNTYTPIPQQPRTQQTPAPLQPRTQHSPAPQQPCT
QHNNPHNNPYSPAHIHEPARTQTEQSPTDMNCTLPSPTLPSTSRSKTLQTTLVQFFPK
>6456721_Bli#DNA/MuLE-MuDR gi|6456721|gb|AAF09242.1|AF195203_1 transposase [Brevibacterium linens]
MADPNSAVSTLINQVLTDPDLAHSDVFRQMLQAGLQDLIEAEATATIGAARYERSEDRSTRRNGSRKKTLATPSGEVDLA
IPKLRKGSFFPSLLNPRRRVDKALYAVICQAWIDGVSTRKVDDLVRALGNESGISRSTVSRICADIDEAVAEFLARRLDH
TWFPYLFVDATYVDVRHRGRVVSQAVAVVTGVSSQGRREILTMSVGDAESTDFWTQVLRGLRERGLKVSTETDPEGVALV
ISDAHSGIKAAVKAILPGAGWQRCRVHFARNVTQRLGSAHSKPVNALISRIFAQTTAEAVIAQYKQVAESVRASFPDIAD
MLESAEVDLTALVSMPRQHWQKIWSNNPIERLNREIKRRADVVQIFPNRESVTRLIGAVLQEQHEEWQYGERRYLSEISM
RKLVTVLHGQTEVDPVGVVMPLTA
>CR1_Ele23_gag#LINE/CR1 1354-2152 via tfasty with CR1-5_CQ_gag, 1 frameshift and 1 stopcodon. [Aedes aegypti]
MSCNKRQKVIDDADRVNCRGYCGNSYHMICVMLDYSLRDILKGHEKNLFWMCDGCAEMFSSDHFRNIASRCTNGHVPDES
SFKTLKEDIAGLKEIVRNLSSKIDSKPVTPVMTTSWPVPNRMSGLNPVPNTHKKKRENSQLKEKPSNIRGTKAASELVKT
ISPPEELFWLYFTSSTSDKDIVTFVKNCMDLTDMEPxVVRLVPKDKDPTTLSFVTFKVGVNKALKDLALSSEIWPENVYF
REFESHPKNQRRVISVTSGKSPHHVQ
>CR1_Ele16_gag#LINE/CR1 784-1620  [Aedes aegypti]
MVDVCESCAHELTDQIVVKCNAFCSSKFCQRCSRMPDEILRAVNSSQNLFWACNACTDLMKKSRFRNAMVSVNDVNHTTI
DELKAEIRDYVLGEIKTEIRLNFKNFADNMPVTPIGTLRPLVQVSTRSKRNREDDIDQTRTRPQKLFRGTGVAASSGMTT
TDGGPTIHEEDRFWLYLSGISPEVTDDAVSSLVSSALETNDSIVTKLVPRGKDMSTLSFISFKVGLRPSLKEKAMTASSW
PRGLVFREFVDDTRDNRRGFWKPSITTADAGPTPATIIQ
>Polinton-5_NV_px1#DNA/Maverick 8421-8924 [Nematostella vectensis]
MFRGNGSPCNCXLMMVFSPTISLAKPKYEDSTNFSHLWVLLSYDXLSQFPRSDGSAKPATXPFASKEXDTPIETXYAPFQ
DMYVYSNXSXGNLVMGSQYXNLLRVLSPEGKHGEAVERNFINPFYFPIRLQVIXKIHXYITDDAGEPISFQSGAVVGTLH
FRRVRFA
>CR1_Ele30_gag#LINE/CR1 333-1187  [Aedes aegypti]
MEKKHCGECHLEINDLEPVRCGLCESPFHISQNCCGFNLRSCKDVFAQGKAVFVCTKCRDELNGRSIRAYIADQAHRNVS
PTASADNINTQIQQLSGIVAELSRKVDNIANISTPKLPVVREMRTPVWPGLGMKRRRGENGQSLAPAADRGTGAMDFSDL
SIPFITPAASPPKFWLYLSGFQPKISDDDVQKIVARCLDLRDPFEVIRLVPKGADTKNMSFISFKIGLELALKQQALDAA
RWPTGLMFREFVDFSKNRRPLSFAREPPAVTPTQEQPTGNPETIV
>CR1_Ele28_gag#LINE/CR1 352-1176  [Aedes aegypti]
MAKSCGKCAEAITGLDLVICRGYCRSAFHMNCTTVTRALQSYFTSHKKNLFWMCDKCAELFENSHFRAISVPQNDDWPLS
SLTTAITELRTEIQQMAAKTTSSLTPVARSRWPVVGQRMQFKRKREEQNESRVTEACKTGAKQSVGNVVAVPTCVEQQDT
KFWLYISRIRPDVSSDAVMAMVKANLEIEADPTVVKLVPKGKDISSLTFVSFKIGIDADLKSKALDPATWPEGIMFREFE
DFGAQRSQLPSKVPRFLTPSNRDVLTPDTPVMNLT
>21109571_Xax#DNA/Merlin gi|21109571|gb|AAM38077.1| transposase [Xanthomonas axonopodis pv. citri str. 306]
MTQHYLRSAAYRDFSIHSIYGMSDDDIHAMFARLRWSSDSHQACPACGAWAQHYRRPARQQWRCKECGRDFSVTSATAFS
SRKKSLRSILLATFYYVTGVKGLAGLGLSRMGDYSNKAAHVALGKLREAIFRTQDFTPLTGVVEIDGGYFGGKPRKPNRR
GLRNDQAIVDRIAGRPAKRPWHASGMTRTNWEKRKNKRVVMIFRQQGRPGEGAVRSIAAVARSENDKDAAKLIARYVSSE
AIIMTDESPAYATVSATHTHYAVRHSHEYVSAEGVNENQAESFFSRLRRWEYGVSHGVRPAYLADYANEMAWREDVRRFS
IRTQVEMLLIKALTVGHSRWWRGYYQGKRRGTEILMNQGIPPSSASGASAQ
>CR1_Ele3_gag#LINE/CR1 751-1578  [Aedes aegypti]
MAASEVCHSCARGMTAVEVVCGGFCKATFHFSCANITEDLYKEIRGKPAIFWMCNGCRELMSNARFKNALSSMNAAAIEV
NDTYLKLIEEMKSEIKDSLIAEIRQEIKGGFNQLSPAVLSPLPRYFKFGHANSPKRRRDDEAVASDQPSKILRGTGPSTA
DIPSIHMDRTSDKFWVYLSKICPEVSETDIERLAKDCLHTDEVVVKSLIPRGRSLSTLSFVSFKVGVSLELKPKAMDPVS
WPQGIEFREFIEDEGRKTQHFWKPVLSVDSGPMTSS
>Polinton-5_SP_pro#DNA/Maverick 4068-4586 [Strongylocentrotus purpuratus]
MDTSQIQHMLVNHLATKDQFKGVFALDQLPRRVNDNIGCYVVNTDPSTSPGTHWVALYFNDGKGTFFYSYGNAPLYYDRK
LYSFMMGKSITMDYNEKRLQGTLSSVCGQYCIFYLIGRCKGYTTRGILKGFGKDHSRNDMKINDWFNRKHNTSLPVLDIN
FTLRQIARSIDEL
>Polinton-5_NVi_int#DNA/Maverick 10913-12055 [Nasonia vitripennis]
MSSSSYEQQYDVSHEAGYAGARNLVRVNRKGKLFSAADTREKERIYEWLSNQDAYTLHRPVKRKFPRLSYNVSNIDDVWE
CDLLQLTTIKEHNDGYCYLLVVVDVLSKHAWLEPLRDKTTANVTAAFGRILERSNGRVPILLQSDKGKEFVGSTFQEFLK
KRDIKFRTARNPDIKAAVVERLNRTVRERMWRYFSHNNTQRYIDVVQKIIEAYNHTQHSGTKMRPCDVSIYNAAKARENL
AKRARLQSTYKNREKMASGVINKYKPGSYVRISRTKNTFEKGYEKNFSEEVFKIKRISNRQQLPTFILEDLNGEEIDGFF
YLEELAHVGTKRMSDAAEQFKIERVIRTKGRGSKKQLLVKWAGYPDKFNSWIKASEVQKI
>CR1_Ele9_gag#LINE/CR1 160-1824  [Aedes aegypti]
MKCGVVNCTQNDNRFLWRCQGNCKRTYHAACIGVQRHHEEILRTFMLPLCQDCQDKFIPEFNLNELSTSFKHISESIGHS
LTANHKLATNFNSLSAMHDETLAHFEQMLSEIKRSISIVNSSSKTSAAEIKHQLSALLDTPPTDPCAAVEKAVKSAATAA
VEEIIISTSAAAHSIDQLPQLINDLVDKNAILASDVKSHIEEMAKTFSATHTHTCEPIMANNLANELGDIIKPSPSWRML
GNKKVWKHDWTEYDAKQRSRRTQEKKEKKARRRRKQRQEIYARNQNHRNINNNNNNNNSNNYNYNYNNNNNGNNKNNNNR
SISNINNNSNSRNNSTISNINDNNHNIDKSTTNNTEITSTHMNSVRGNSSLPLDKELLAAARVQFSQPPKKDNGPKFINF
QKGETINPYRPEKPARLENPPLFDPMRPPIVRLTEESAAGDQRFLKARLRDPKIMDIVRTYLSFLHDQTPSTCIRGLTKT
SASLTLAAEGLPADTNLLREIFLDVHEELGISRSDALEDLKSYRAFLSSERIQRLQLTRESANKFYSAGLQNFRK
>CR1_Ele42_gag#LINE/CR1 605-1468  [Aedes aegypti]
MVCKRCQKKVSGDDGVVCRGYCGASFHAFCVNVDEPLRKQLGQYRNNVFWMCDGCANLFGNAHFRALMTGFDEKSSMVPS
AIQSMQCEIEKLHASVKTLSAKVDGMPTTPTPFSTPNPWPAIHRINRFTKSAKRFRDTDGNPVNVEDGSMKMGTKTTNPC
STICLDSRQEDELIWIYLSAFHPNTTESQISSFVTECLELTANAHLKVIKLVPKGKDLNTLNYVSFKIGLSVQFKEKAFS
CESWPENIRFRQFEDNRAKNLPRVISLSSTVQQGITVPPPMDSSSLDI
>Perere-5_pol#LINE/CR1 1657-4386 [Schistosoma mansoni]
MSELSLMVDDLNPDIIVITETWLTVDIDCSPVISGYICVRSDRVRSRKGGGIILYIRDHFRINLIISEAHVSGTCEVVCC
TIRSRNGLVTIGGIYRSPCCLADDFILKHVCSWSKAECCLIVGDFNAPHINWIELTAPGGGFDSVLLSSIIQCALVQCIV
KPTHIDLEHNPSLIDLVLTHHCEDIADIQHLPPLVNSDHVVLSFKFRIHGIEFASAPPRPNIWRANIPAIRDYAISIDWS
VDADGSIDDARNRFKSTFESVTQPFIPWSARKLSYCPPWINKETRKLLKRRKHFWDLFLSTGQASFKCEYKNRNVCKKTI
AKSRTAYERQLAYDSRNCPKRLFSYVKRRTKRSDGIPSLLLSENSALLTESDLAKAETFANYFSEVYSTCSVTTTCPVDN
EIPAIGPLHVTEDIVLPLITNLKPCKIPGPDGLHPRLLSSLADIISRPLTMLFNMSLSQAQLPRDWKDAIVSPIFKDGQR
RIVSNYRPVSLTSIVVKLLEKLIRAKLLSHIDSYNLLTPEQHGFRNKHSCLTNLLIAREDWIAALDNGQSVDVIFIDFSK
AFDKVSHLGLMQKLSSFGITGAIQEWIGSFLCDRRQGVRVNGTLSEWKPVKSGVSRGTILGPLRFLLYINELPLLLRSST
LLFADDVKIWRTIRNETDRCYLQADLDELVRWAHDWGLEVNSRKSVFMHIGHDISYHYTINGTSLPRVHEHKDLGVIISH
DLKTTTHCNAVASKGYRALWSLRRAFKCFDEDMFRILYPTYVRPHLEYCIQAASPCLIKDTKSLERVQRVGTKLVKGLSK
LPYDERLKRLNLFPLSYRRTRGDLILAFRIFNYDLGVNMSYLFAPSSTNNLRGHSKKVLKPRSNKLKVGSRFSHRVVNDW
NALPEQVVSAPSVNIFKKKLDLHWKEICQD
>Perere-5_gag#LINE/CR1 377-1615 [Schistosoma mansoni]
MVGSVHKCGQPYCLFPVEEGMQCDECKKWFHKMCTRLSPAAYKRCSKPNSHWLCMFCCSSKTLLIQEAISLLALAKKVDI
GRAGNMDTDNEDCISVVNAAMAGTRHPISQHEAKICTPIQPMKATPLSTEGPVALAATEDPARTTIVQNSSNLDAENSGK
WITRKRKRDGKTSKESARMVGKSSLDSRPEHQATPLKSKCKEIINTVVDGNSLTSPNVVGSNSLDPHDTVIKKANSKKPV
ANRQDLTSRSKAVNTTFKAVKQVPSVIIWNLAESKDTDPAKRHAHDLQLVGSLIRNILPKEVPGVHISKVIRLGKYVGGE
TQQRRILKLVLGNFEERDVLLNNARKTRDSNIRIRPDWPLEDRTKWKNALTELKTRRLNGEANLTIKGFRVVRSWKPILP
RPVWVERMSPKTP
>Polinton-4_NV_px1#DNA/Maverick 2362-3132 [Nematostella vectensis]
MEQLLEKIARNTEPKKSFYILVSDKSTRIRTKFNPLLQLDKSKQYEMALVNLETYYSFPNIDSTNNNFRYSPDNGATWFN
IDIPEGSYEITDINDYVQRIMKDNGHYDSANDEYYITIEPNNNTLKSVVDISANYKVDSTTANSIRTVLGFNSQVYSEGY
NESENIVNILSVNSLRVTSDVIASSYTNGGTENIIYSFFPSVGPGYKIVQEPLNLIYLPITLGTISQMETKLVDQNGKLI
NLRGEELSIRLHIREA
>Polinton-3_SP_px#DNA/Maverick 3119-3877 [Strongylocentrotus purpuratus]
MGSHFYMTLPSNSSMQYYPNNKTCKFTTKLHTPLSLNGDYEVALVEIQFQCTWYNVREINNTITVFNKNTEDGVPLVRNV
TLPTGYYYTGEELITMINASLDQDWRQRVGLFYKKSSRKVYVQLRADTGLLIPCNLARMLGFDRECHLLESTESPMPVDP
HVEFHTFYMYSDIVQYQHVGEVSVPLLRTIATKARKDQYNSVSTYNTPHYVPLKLYNFETIDIILTTESGEVVPFERGKL
IVKLHFRERSPSL
>Perere-6_gag#LINE/CR1 258-1355 [Schistosoma mansoni]
MVGSSFKCGQPNCLFPVDEGMQCDECKKWYHKMCTRLSPAAYKRCSKPNSHWLCMFCCTNKTTLIQEAMSLLALACKKKD
SGCANNASTDSEDCVSVVSAVTKRAEQPTLINDEVKLPLQPTRSKSPHGIDMSNHVSLVEIEDPDKTVTVPNSPNAAVLN
DQKWTAVKRKRKGKKANDKAHLVDKPLRNSQSESLNALSHSDRTADHHPSATERNLISSNIIVSKLPESNDPDPKVRHTH
DLERLGEYIRSILPDNTKGVQVKKLVRIGKRADDSVLPRPCRLLKVILGSEKQRNLLLSNARSHDNSDIRMRPDVSLEDR
IKRKTALAELETRRQNGEENLRLVGFRIVRSWKRMLPRPVWIGRSP
>LINE2A_CB_pol#LINE/CR1 27-3776  [Caenorhabditis briggsae]
RAVTPSIPLISIFLAAMVVTIIKHKPRNKRKALSALKDENGGKKSKLSEYSSKEAVDDIIESVDDMSNPLYDLLSNDFKS
KEEFTVNDIAMMFKSLAETILKLQSQNTMLKNQNCILNANLSNLTEKVDGLEENLKLLSSQPKESPKPPTTLIKTFASAV
ASTISAPESQITFMRAASLANSEDARKSNVIIKNIDLSEEAIEKAEIRLQNCQGLRYFDAIGFSHTSSGQRAAHCAPGIQ
VQGGSKNCPHQIQLNQSFNTGVLECVSPPRPLQTRTREISTILENGDPKEQRGRSNHLYGSQSGSRQSCLQRKSGAVAMG
QKTLDPRKFLKIGYTNSCSIKNKVLQLDLWSSNSNIDILCLVETKIDSNYPDSLLSLDEKYAVIRKDRNRHGGGLAILIK
KPINYTVVSLPTHLESVEILSVDIKIHGKTTRLIVSYNPNHNYCFKDLRESLNILLSTENPSIITGDFNCAHVDWNSYTA
SDSQCQSLLDFSLYNGLTQFVQNPTRLEQPNILDLVFTNSMDIIRDVIVGEKFSDHCRIEIDTFILLNSISPLKSTKNFK
KGDFRSMNYILSNIDWDLRFSTMSIDEMFDDLRGIILELIESFVPTETHRIHNIIYSKETKQLLKKKLLIWKKAGNSDEY
KHVSALFKRSLVKSEEERIYKRLNSGSKNFFGFMKSKFKGNSDIPAIRYKSNENVIMSDEGKAEIFGDCFSEFFNIDKDI
LPATGNLISKFSSDVIFTPENIELLLYKLKGRNNTSPDSIPSIFLKRACTPLAIPLCIIFTESYRVGRIPKSWKEAIVMP
LHKKGSRSDPLNYRPISLTSNICKIMEKLIRKHLVQYLSENNLLSEKQFGFLNQRSTISQLIAYQNKLVFNSLNGLDTHS
VYIDFQRAFDTVPINKLIHKLESFGISPKLRNWLHSFVTDRKFQVKINDILSKERRVLSGVPQGSVLGPTLFLLYINCIG
DKFQSDYLLFADDLKIYDTNDRLIDADLIELENWCSKWKMKAAPKKCEYIKFNATRKYANSNVMNPKLNQALIPPVENVR
DLGIYFSSNLSFHYHYSLIIRKSHQRINMFFSILKNASWSVFIKCYTIYIRPLLEYGTIVTSPILKDHIIKLESVQKSFV
FRIFKKFRMAYTSYFEALEECQLSSLEYRRLYNDLVYTYKIIVSKEIIMEVPIFEIFNHAGSLRRHKYYLKSLIKNSTKI
SSQFLSNRVIRCWNSLAKVCPVKPSSAAFKNRLLSCDLKHFLVLNSTNY
>DMCR1A_gag#LINE/CR1 435-1466 [Drosophila fruit fly genus]
METVNVVCFYKNCCQVIKPEQPKMTCWLCDRMVHTKCAGFNGRTSDDLAKGKNLNYCCDACLVVANEMKSFMRQTKGGLK
ELINSFGVARDSFRRADDLLSALNSQFNGLKLLDESPKRKKAAGGRLPKAPQPRANDQQDSTTDQLSIAANPHMLLRSAA
KKDSEQSDQSAVEGAHPVIAKDSELSALVSQPVIPPVSISLPPQGNIESGLPAQVGTSEIQSAGPKPLAVVPLKKQIFVS
RLSPDQTSSDVLSYIQDKTKADNIKVEKFNFSYARDISSFKITVPNELFSTICSGDFWPDSMVVKEFEAKIKNRKKGPVG
IKLPSRGQTTAPSASSSSSSSKN
>LINE2E_CE_pol#LINE/CR1 878-3810 via tfasty with LINE2A_CE_pol, 1 frameshift and 1 stopcodon. gi|3319427|gb|AAC64624.1 partially overlaps  [Caenorhabditis elegans]
ELGHRTANHHLNHSNSSTLSCPVVASNIFTNFTNLSQVHAATKDLSISNTGARQTCNYPEVFPVGCVLANVRSVSTVERL
SFIHSHIRSMNIDALFVTETFLTPSTLCCATDILCHRSDRSDAHPKSKGGGVAMFHRSSLLFSKCDALIEKYYDQHHCDI
LAIDHNPSKTRFIIVYRPPDTSLSQTAALYHNLSELLNSSNRRNYILGDFNLPNVKWTDLARLPCNIHRDLAAFMISNNL
YQVVNKPTRVALSGMENILDLIFTDSPSLISSLKSESPLLLSDHLSIKFDLVLSQPKVAPSLKKHRALLFRKCDFRSLNA
HLQSFNWPRQLSYFSNCETKLIHFLKIFNELVREYTPIAVERAKISTKYRRNLHRRMKQRRSRNVHIDTKRIIKARLLAV
xKRLAKQETRIVESKNSNQLFNLVKKRIKHSNAITCLEVNGRTTMDPSEITDEFIKTFSESFTLPSEPFSALPAKKPSSI
TPDFSPVNIHRIIQKLRPKIGYSRDDINFYVIKNCVHALTIPLSHIFSESFDSGHFPEIWKQSVVIPIHKKGKLCDANNF
RPISLTHPLSRLFEKIVMDKLRSLTSDKLSRFQFGFMNRRSCTIALLNSCSKAYELLSRRSTYVDLVYFDFKKAFDCVPY
NLLLCKLQLFGLDMKLCNWFQSFLCGRKSVIKVDDYVSDNSFDVISGVPQGSVSGPYLFLIYLNDLLEMFPSDVYVTAFA
DDIKILGDNSTAIQRAIDIVTEWCTKWKLNLAENKTNVVHLGNKNPKTKYFANGIQISEKDSVKDLGVFVDNKLNFKKHI
NYISNCALLECKQLLKSFRSTNANLYFKLFNVYVQPLLNYGSEVFSPTAKSLIKQLEMPLKFYSRRVFQRCNMQYTSYED
RLAQMNQKSVQHLRILQILRTFHNIVSGEYHFPNVSSLKKARSPRFPLMMKSVRPADKSFLLANLEIWNRVAQLIPEKTS
RQMFASRLNFIPLHFLLP
>LINE2G_CE_pol#LINE/CR1 1-2582 Overlaps old Sam_pol gi|17544010|ref|NP_500227.1| (1 frameshift; fragment) [Caenorhabditis elegans]
VTGLSNQYSVFRTDRAKGKRGGGVCNVVKVEIPCETVVSxLKTLNAYEILVNDLNIDVVPFRIINIYRAPSCTYQNTVRL
ISKIEDLVEHQGKVVVVGDLNIGGIDWGLNDSKTKLGSLLVDLCKNYNLEQYVKMPTRKSKILDVALSNSVISNLNIMAP
IGSSDHNTIKFTVQLLQNISVPKKMIPDFSKLDWPCCATYFENIEWGKVFDTHSHVNDIYECFLGHIRTMFSQAVPTMPM
PETSKPVPQYLRSFEQMVKNQFSKTIMSKTMNDFIEYIYLARKYRKKLRKYLSNLEVKLFKKKGNSKFSKHAKTLLKPRN
CSVPALIDNDENEIVSELDKANLLASYFEAQYTNQNNTNFALDDDFVSDQPIPWVTDAEVLKVIMASKKSCSVTSDQVPF
TFIKILSPLISSVLAQIFNLSMMRGQVPHAWTESIVIPLDKITNANNPTDFRPISLTSHLCRVYERCILAKIELFLIDNK
FWSQNQHGFRPKKSTVTNMLESLNDWSKSIDLGEQIDIIYLDFSKAFDRLPHDLLLDKLVSLRMNKNLLIWLNEFLSNRS
FRVRIGQTLSSRKLATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLYVSTPKTESENNLQSALDAVVDWT
RGSKLTLNQSETVHVTVGKRRTDFKYHLDGYPIERKAITRDLGFLISEKLDFSEHWRKCINLAKFQLANMFNQYSTSNKK
LMILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTRRLYSRIKKRYINPTDKDYKTAMERNELFDLQTLSTRRKI
IDRIQVIRMNNGKVDLKTSEFFEQQETHTRSKKKYIWSTGKSKLRRHFFVNRTLATMKQH
>Polinton-4_NVi_atp#DNA/Maverick 5388-4693 R [Nasonia vitripennis]
MDFQQQKIKLPVSNFDTLTEQQKVQKRHGELLPDNIRAVFCGPSNCGKTNTLLALITHPNGLKFENVYIYSKSLKQPKYK
FLEKLLRPLPGIQYFPYSEHDTVVPPDDVLPNSIMVFDDVACERQDNVRAFFCMGRHKNVDCFYLCQSYAHIPKHLVRDN
VNVLVVFRQDDVNLKHIYDDHVNPDMTYTNFKALCSACWKEGKHGFLFIDKERPINDGRYRKGFDCFATNI
>58583584_Xor#DNA/Merlin gi|58583584|ref|YP_202600.1| putative transposase [Xanthomonas oryzae pv. oryzae KACC10331]
MPRMPCRHQTTLACRHAVAIQQAVFAPVDAGDVPVDLQPRPTLAALELKRHLGVTYKAAWRMKHKIMQAMTEREEPRKLK
GFVQIDDAYLGGERSGGKRGRGSENKQPFVIAVQVDHSHEHPVFAVIEPVKAFDNASLEDWIARRLEPECEVYSDGLACF
RRLEEAGHAHTHARYRRRSCCNRRPGSTRWLNVVLGNVKRAISGTYQCGGPGQVCKALPGRGGLSLQPPIRPETDAAAAG
DGTAALHTLPRARFAYGKQLPWLRDGANQEKIRKASMWKRRRVISFKKMTYMARPVFTNTRGCL
>IS1595_Xca#DNA/Merlin gi|21231554|ref|NP_637471.1| IS1595 transposase [Xanthomonas campestris pv. campestris str. ATCC 33913]
MSINAVQFQAGLSMPEFFASYGTEAKCYRALYKWRWPQGFRCPVCAGRVRSRFKRGAAIYYQCSACRHQTSLMAGTMFEG
TKLPLRTWMLALHLLTSTKTNMAALELMRHLGVNYKSAWRMKHKIMQVMAERESTRKLAGFVQIDDAYLGGERNGGKAGR
GSENKQSFLIAVQTDDTFTAPRFVVIEPVRSFDNPSLQDWIARRLAPGCEVYTDGLACFRRLEDAGHAHTTLDTSGGRAA
TEATGARWVNVVLGNLKRAISGVYHAIAQGKYAKRYLAEAAYRFNRRFRLREMLPRLATAMMQSTPCPEPVLRAASNFHG
>CR1-89_HM_gag#LINE/CR1 3-599 [Hydra magnipapillata]
LSRVEHLELLERQNKNVQTLDNVVVENEKAWNIVAGKNIKKTKEQINIINTIANETAERMKKENNILIYGITQCNNEDIL
EKKKFDQNEIKTIMSKINTEAIKIKKLTRLRSKTEGKSAPIILELESKACRNLMLKNAYNNKEKINGIYFNVDMTEAERY
LMYQLRNQTKELNTSITNTSSIYYGIRDYKIVKLKRTQN
>55239500_Aga#DNA/Merlin gi|55239500|gb|EAA10638.2| ENSANGP00000018077 [Anopheles gambiae str. PEST]
MPPDMTKPAAHLISPLFVKDLASRMPLKHIGGEGLTVEIDESVITKRKYHRGRIADNNQVWLVGGICRETKEIFLELVQK
HEAGNLQGIIMNNVAPGTTIMTDGWHAYIGLDGKGYEHEMINHSENFVDPSDPLQVGILKQDKLRKAELAQWKFAQHEAF
PDEVTELSKTLGGSDERHGNVCKSSPIYKKWPFMDEEDIRHTTD
>CR1-C_gag#LINE/CR1 439-1530 [Gallus]
MVTTRRRAAAKRNVETQTESMNAHAAVQVSGCGECLALSLLQEGSRDTTCVRCEQVDDLLSLVVELKEEVERLRSIRDCG
KGIDWWSCTLPSLQEGCGGDAPQAVGDHLPSHSQVGRGDLKDSEGWKQVPVRGNKRTAPQPVPPSQVPLHNRYEALELEG
LGDVDVGESPSVQERLPKASQSAPRFATTSVRKKRRAVIIGDSLLRGTEGPICRSDPSHREVCCLPGARVRDVARNITRL
VKPSDYYPLLVFHIGNEEVGKRSSRAIKRDFRALGRLLKGSGAQVVFSSVLSVGDWDPHKRRRVDTLNEWLCEWCRTQGF
GYYGLGRSLEKGGMLTADGSRLTRRATNILGNKLAGLVSRALN
>MuDRF-1_NVe#DNA/MuLE-F 143-4856 5 introns (209:742, 1652:1870, 2066:2481, 2716:3139, 3368:4136) [Nematostella vectensis]
MLLLMKSLLELEQNHCNSEKKVVDWIRGCSSKDTNMERTKMVSSFFGQGTHNSRATWGNILRQAVSLGYVSIVFTENKFN
KISRIYRKYQVSEKGELFLNMPTNVFVKDPSAGADSSLDRTRGKTRNKRGVKQLLPKIRYALEKKETWLEMTPQDYMFPG
FGDYPEKFRYCADVTALKQCVDSASFIHQDCELSTAHAHIAPQKIKIDDELVEVELRRTRCQGVKVCDSPSCTYTVSKSQ
RRNRCRDHVNCNLRETGPCPVHIVIVTPKDPSDKRRWIGITGIDSHHHNHVKPSPHKLPSFVIHDIKKAALLDPSKKSKD
LQKGCGMAYVPTEKTIVAANLDKIRRARNAAFGSSRGKLEEYPVMINKIVNFESEVQQPVDKGSEEVEPTDPIIAKRIKE
LSHPYQMSRTPYLFMGDLSVAFFMNAYQRRLFAMAEHLNVDMTFTGNQSLPYLINVVTFDWETLMWVPVSRSLLNKCTSE
AHAIVFREIFRSVDAEIPEFSMGENLAGITVDFSDAEANGLEEPLGKEFTEKVLRGCKVHWCRSYQKVSHRVCKGKDAIA
IFQHIASKIENLEQKGQVDLLFSILAGEVKVKRALPFITIAEYKKTAETMDNSDWIKAKHWKEWWTRKRHLQMFTKAYTQ
MTDSQWDSCPSTTNPVESINRESVPKDGRQRTMYEVLSHLYRADKVYAARKVAVDQNVSLTYRDKSQSSQEAQRQRKRTW
RRRSENLARETKADSDPQX
>CR1-84_HM_pol#LINE/CR1 1172-4177   [Hydra magnipapillata]
KLDKNVIFNSPNNYNNTISSESGKQFINFLYTNPTSFTQNKLHELELMLSYTNPSDVIMLTETWFTNSSIVNITNFTIFR
KDRDSKGGGVCIYVSNHLKSLEITDNQLCRENIEQIWCNIKIASESILVGCIYRPNDDATTINEILKSIKRAKELRNKGL
FTSIVIAGDFNLAGIEWDSDNTPRTSTQYEQTFIETLHDNNLTQLVNFPTFIKNHDESAKTTLDYIIMNQPERLDQLLDF
PPLGATCRGRGHLVLTWRYLLNKSTTNNYDNNLRKKYAFDKGNYELIKQYFNKIDWESKFTNSSIDEDYEYFVKEYILAC
NKFIPIRNNKNNTNNLEPWINKTAKIALKIKHKLYYRAKNNNWRRTQKTKSKYNRAAKQVKKEIFKSTCAFERHLAHESK
KNPKLIYAYINKRQQVKRAIRSLYDKIGNITNDQINIANTINNQFQSVFVKEPDDEPVFPIITEHKCSLLTILQDINEQT
IKIRLENVDTSKSIGGDNIHPFVLKHASVAIAIPLSLIFKKSLATQTVPKNWTEANVTPVFKQGNRLLAENYRPISLTSI
VCKILEKIVREALTAHLELHGLLSNSQHGFTTKKSCVSNLLETLNTITKALAQGHNVDVIYLDYAKAFDTVPHKRLLAKL
LSYGIENDLVKWIRAFLSNRRQRVVLGETVSDWCNVTSGVPQGSVLGPQLFNIYINDLPRLLDNTSKLYADDTKIISIVD
THQQSLNLQNDLNKVQNWSKTWLMKLNTKKCKVMHFGKFNNNFKYQMQDTSSNNNMHTLETTTEERDLGVILSSDLKWKP
HIDKITNKANSVLKMLKNTFTCREKELWKKLYTSLVRPHLEYASTAWNPSLASDIDKIEKVQKRATKWSQPNTAYANRLA
NLGLTSLAKRRERGDCIETFKITNKIINIEDAFFNMKQSTNLRTFNNHQLQKDIYSSRQANDYSKAVKFRDNFLSNRVTQ
VWNYLPNSVIEASGATPKAAINKFKNNYDKFQKDKINSIKQ
>MuDRF-1_MLP#DNA/MuLE-F 486-5495 via genscan. 9 introns (527:642, 1447:1525, 1759:1827, 2009:2086, 2595:2689, 2944:3023, 4469:4542, 4630:4692, 4947:5372) [Melampsora larici-populina]
MKVKRMTGSIIEDTIFFVFSDLQAMKQKKSTLARLKDHDHRYDSEEDFHQADSSDTNTSETHTSESEDEKTRAILIEPED
NSDFEDVEEADADDLDQAQSTGDSASKISLSQSQTSSISKKPTSSPELMRKKKDKSLLKTSSKTHSISTAPKKETSNAQH
IKQFKIKSKKLQARLKERRKKFTTPHNPDMFKTFIDHGTIMDAQSYPLFINGSTTYVTKDTESITNWGTFGYTYTMSGGD
VKGRWKTTRYKCLGVLKCTNESCKYRGSPPTGRTKISKLVQQQKPCKVPRCPGIVIHVACKDTFCRLDECVETQWGLLRH
IGTHDHPWPVRTKADKISKEEFATVVKNNSKSKPMQLKTGQALAGKKPIKSVSTIHVAYRNRSRIASERRSVLKDAGIIS
DKKGKGVQDEFVIDMLSWAKRGLDIIYITMTPANAHISFQTKWMKERLLTIDDDGRAYSGGLLTDVTYKLFATGYLCSTT
MYDNDLCRWIPVLFTWLSGLSEAHYHAHFVQLMKMVKDAPITPPQRDSLIRTVVDFSAAQKNGFIQAYMDVFEEYDRDRA
LSRLNGCQEHYRASVTRLKRNFAVTGGQEDVFEGLALGLLKKSNSKTHDEKLDELRRTFPKAKNWIDWWQTSDIKAMLFR
SRQPQMDDFDLSEDELPETTNAQESMHRVIYMISETKCSIQIGMVQLYALVKTLERDHEDVMRGITVEYGSLSRHYKTVA
ESLGWTRKHRKQRAVPNDGRPPDTTEALGLKSKKLGRPKGSRNVDRNPITTYQGYIASSITGRQFRCWEDSMLECLYAIH
NPLWYRGSRGKSGDIFTKMMRHFSARTSFDMNHLGDIVSILSKGQDNLHEAIEDAYRGSFKPDTFSSAELFLEGLFDPRK
NSSKAVQTIFQVQRECRYTCSRKCAEDHESDDRNNKIKIRKLIGLNLRPEDFEAADLEYGQGPELVQKLCSVGVYSQSNY
HCKPCMDDDKKAKLILEKKKSTLKTATAIPKAIPPFCYQLVQYNLTSPPLHLYIHQDITPLLSQNLPYDSFMCDSNWPAT
MKLGGNEYTLKARGYWGNKHYWCKVVRTLGGVSGVWLNDDTLNKGIARMLSSDCSSIAGPSPSTSWLMYSQTYSKSEQAI
VNESNEKIRKDNSKSKGGAKLTDHHNHSHAKDSSSYKFLLENGGKRKKKAIDHVEDDSSEEGKSAKRVKLVDDMKPAYSQ
LVADATASATAKVKQQVKSIKTCKTQESNTVDEAQCGDSKRSHKGWVWVEERPESNDLLPKDNQHVQSQRKMMVWWRKVA
HLRLDYATLRRHILRYTITRKILCVKVKI
>Merlin3_SM#DNA/Merlin 69-919 via tfasty with Merlin1_HS, 1 frameshift. [Schmidtea mediterranea]
MNIETINNLADNTAVIQFLRNLRLLRSVIYCQGCENILREVKYKRNNDGVALRCYKVACVKNKTYVSIRRNSFFDICKLE
LKLIMKVVYCWFTDVNQCKVARDYGVHRNVVCIIYTKLREAAKLYMERTEYKLGGRGIICQIDESMFRYKQKYHVGRVPQ
DHRWVFGIVDISSTPSKYYVELVANRSAQTLLPIIHQRINEESIIWSDELRSYRNIANERFTHQTVNHRLHFVDPETGVH
TQNIESLWSKLKKDCKTQNGNSFTSLKLNLSEWMWKDNIACKIY
>CR1-88_HM_gag#LINE/CR1 3-889 via tfasty with CR1-22_HM_gag, 1 frameshift and 1 stopcodon. [Hydra magnipapillata]
KTYRTEVGAMFRTALTIVLSEIQQQYNKQINELKEEIVALKTGNEQTTTIRPINRPTNAPVSYSSTVNLIGRVNTTQRNH
LLNITAAEVNTRKERESSAIIVGLEESRVxKNLPSKRIQIIVNEFLDSIKIDRSNVVHIQRFKNRTQTNVDSSAKKQIGI
VKVVFKSSEYQKEALKNGNYRNISKFKDVFIREDRTPAEQSEFNKLLATKKRKNEEFNKIAAQSIKPFRWIIHRRTKEVR
CIDAGESASQKKRIWASKPQLDQIRADLKKFQELQKSQTPAVATNRFGIISIEEEA
>CR1-E_Pass_pol#LINE/CR1 86-2986 via tfasty with CR1-E_pol, 1 stopcodon [Passeriformes]
EGGGAPIHPNPASQMPTPVMDAxKQCKGIPDTPASEPALSGARLRCXYTNARSMGNKQEELETCTRLRGYDTIGITETWW
DGSYDWSIGMEGFRLFRKDRLGRRGGGVALYVNDQLESMELCLGKDEEPAESLWVKIKGRAGTGDVIVGICYRPPNQEDG
VDEAPCRQIGVXAHSQALVLMGDFNRPDICWRDNTAGHKQSXRFLECVNDNFLTXVXEEPTRRGAMLDLVLTNREELVGN
AVLQGSLGCSDHETVEXEILRAVRRARSKLTALDFRRADFGLFKDLLSRVPWDRALEGRGAQECWLNFKDHLLQAQEQCI
PTRRKSGKNARRPPWMDKELLSKLRAKKEAFRKWKRGQVAWEEYREIVREARDKVREAKAQLELSLARDIKDNRKGFYRY
VASKRKTRDNVGPLQKETGDLATLDKEKAEVLNDFCASVFNGKCSSHAAQVKKGKCRDWENEDPEPTVGEDQVRDHLRNL
NVHKSMGPDEIHPRVLRELADEVAKPLSIIFEKSWQSGEVPDDWKKGNITPIFKKGKAEDPGNYRPVSLTSVPGKIMEQI
LLETMLRHMENKEVIGNSQHGFXKGKSCLTNLVTFCDGATALVDRGRATDIVYLDLCKAFDTVPHDILVSKLERHGFDGW
TTRWIKNWLDGRTQRVVVNGSLSTWRPVTSGVPQGSVLGPILFNIFVGDMDSGIECTLSKFADDTKLCGAVDTLEGRDAI
QRDXDRLERWARANLMKFNKAKCKVLHLGRGNPRHTYRLGGEVIESSPAEKDLGVMVDEKLNMSRQCALAAQKAXXILGC
IQRSVASRSREXILPLCSALVRPHLERCVQLWCPQHKKDMELLEQVQRRATKLIRGLEHLPYEDRLRKLGLFSLEKRRLR
GDLIATFQYLKGAYREAGEGLFVRNCSDRTRSNGYKLKEGKFRLDIRKKFFTVRVVRHWNRLPREVVDAPXLAVFKARLD
KALSNLV
>CR1-Y_gag#LINE/CR1 275-1455 via tfasty with CR1-C3_gag, 1 frameshift and 1 stopcodon.  [Gallus]
MVGTRRSGRAEAATQTEXTQPLWADVCTQVDNPXSEAAVQTVDCGELRNLEVPLGPEGGEGCHGCRCVLLKELLEQMARL
QREISSLRGSRESLRETDRRxCEPTPTADTQXPPKSLQVEVANPAAHLQDRXLDSPREERGWTLVSARSRRRRLPPAPTV
PPTPAVSPAVSLSNRFEALGPDRDEGLESSPNPCPEKHIENTGSNKHRERGRSGHCINTSATKKGRRVLVIGDSLLGGTE
APICRPDNLSREVCCLPGARVRDIRKALPQLIKPEDYYPFIVIQAGSRDAAMRKLKNVKKDFASLGKMLKGSGVQVVFSS
VLPMGSWDPGRXRRTCQVNDWLRGWCLDQGFGYFDLGQAFEKPGMWAPDGLRLSKWGTSVLGSKLSGLITRALN
>42631589_Hin#DNA/Merlin gi|42631589|ref|ZP_00157127.1| COG3676: Transposase and inactivated derivatives [Haemophilus influenzae R2866]
MFESEIQANESYFGGALKGKLGQGEAGKTSYLFFETKWQSNTVVVMNMQSATLLPIIRENKQGSIIYMNFYRGYDILKLY
LKEYEWRFNHSDLKNSNFYFKTINLGEF
>CR1-Z1_Pass_pol#LINE/CR1 16-2685 via tfasty with CR1-E_pol, 2 stopcodons [Passeriformes]
IVGITETWWDNSRDWRTAMDGCRLFCKDRQGRRGGGVALYVKENLERVEVNYGDYGSPIECLWVKIRXVVSKGDLRVGIC
YxPPNQXDKANEAIFGSLKQASGQQNLVLMGXFNYPDICWKNNTAAHVSSIKFLECVEDCFLIKMLDVPTRNEALLDLLL
TNQENLLCNISVSDSLGCSDHSIVEFGILLSTLKVSTKTKVLDFRRANFSSLRAQLGGIPWEASMEDKGASECWEFFKNA
LLEAQXQFIPFKGKGSRRSKRPPWLNCELLSLLKTKREAYQRWKSGxIPIENYKGIARACRDAVRKAKAQLELKLARDVK
NHKKGFFRYVNNKQKQKENTGPLLNRRGELVTNNAEKAEVLNTFFTSVFTSTAGPQALGTKIQVDANTDPPSVKEELVCE
LLQELDPYKSMGPDNIHPRVLRELADVVARPLSIIFEKLWRSGDVPEDWKKANVTPIYKKGLKEDPGNYRPISLTSVPGK
VTERILLGAITSQMKHVIGKSQHGFTKGKSCLTNLIAFYDKVTCSVDVGRAVDIVYLDFSKAFDTVSHSLLLEKPMRYGL
DKWSVRWVGNWLTGXTQRVVVNSSFSNWQPVTSGVPQGSILGPTLFNIFISDLXDGIKCTLTKFADDTKLSGEVDTSEGR
ATLQEDLDRLEEWANKNLMKFNKDKCKVLHLGKHNPGVQHRLGSTRLGSSSVERDLGVLVDNKLNMSEQCAAAAKKANRM
LGCINKGITSRDKEVIIPLYSALVRPHLEYCVQFWSPLYKKDVDRLERVQRRATKMIKGLGSLPCEERLRELGLFSLEKR
RLRGDLITMFQYLKGGYKEDGDSLFTRSHMEKTRGNGYKLLLGRFRLDTRGKFFTMRTISHWNNLPREVVDSPTLDTFKI
RLDRVLGHLV
>CR1_AC_1_pol#LINE/CR1 2271-5198  [Anolis carolinensis]
DPLGEGNNSLANTILPTTTGNRRKAKRRAAQTQQGPSTESTIIPNKQFEGRSQGLTCLYTNAQSMGNKQDELQLLAQHHT
YDVIGITETWWDDSHHWNLTIEGYNLFHRNRTKGRGGGVALYVKNSYVAEEMQDCNPGNQLESIWIRIKGTGTQKDLVVG
VYYRPPSQDEGLDEAFCQQLTKQAQRRDIVVMGDFNYPDICWKTNSAKSTKSNKFLTCLADNFXVQKVEEATRGSATLDL
ILTNVEDLINTVEVVGSLGASDHVLLQFAIQRNAETKTSQTRILDFKRADFQKMKELLSGIPWTPILKNKGVKDGWEFFK
SEILKAQMQTVPTKKKNKTSAKKPEWMSKELLTELKLKSDMHKKWKRGEITKEEFKRIANTCREKVRKAKAQNELRLARD
IKNNKKGFFAYVGRKRKKKEAIGPLQGEDGVMATGDREKAELLNAFFASVFSEKESHLQPQQHGMDEGLGEIQPQIGKQV
VQEHLASLNEFKSPGPDQLHPRVLKELAEVISEPLAIIFESSWRTGEVPADWRRANVVPIFKKGKKNDPNNYRPVSLTSI
PGKILEKIIKEVVCEHLETNAVIANSQHGFTKNKSCQTNLISFFDRVTSWVDTGNAVDVAYLDFSKAFDKVPHDLLANKL
VKCGLDKTTVRWICNWLSERTQRVLTNASSSSWKEVTSGVPQGSVLGPVLFNIFINDLDEGLEGTIIKFADDTKLGGIAN
TPEDRSRIQNDLDRLERWAKTNKMKFNRDKCKILHFGRKNGNQRYRMGDAWLDSSVCEKDLGVLVDNKLNMSQQCDAAAK
KANGILACINRGIASRSREVMLPLYSALVRPHLEYCVQFWAPQLKGDVDKLESVQRRATKMIKGLENKPYEERLKELGMF
SLQKRRLRGDMIAMYKYVKGSHREEGASLFSAALQTRTRNNGFKLQERRFHLNIRKNFLTVRAVRQWNSLPGAVVEAPSL
EAFKQRLDGHLSGVL
>CR1_AC_1_gag#LINE/CR1 1002-2271 via tfasty with PSLINE_gag, 1 frameshift and 3 stopcodons.  [Anolis carolinensis]
MQQKQNIPITCTSCGMFRFFTQKLDNYICSKCKQMTLMEQRIQQLEHRIKTLKDIQALELFLDTAQHAAVDQQPASHQHH
QDHDQEPYGEINSKVDNPQAWKEVTHRRRRRTRQPPQNSSAQLHLHNRFEILTSLTYNQETHLVEDHSFLDTTQWTTLDQ
CAGDSPDGDSASPQSHLCNHANAPSPIIDQEQQEHPLGExWALGCISMDCHxxMHWGVEEEDNTLHLHDSLQQEHSSGDI
HTVLHKRDPVNPQRKQVLVVGDSLLRGTEAIISRPDGMARETCCLPGAKIHHITQRLSRLLKPHHPPHLMLIHVGTNDTA
RHTFQKITNDFRALGTKLKLYNVHVIFSSLLPVVGHGSTRAGKIVQVNNWLRKWCQEEHFGFLDHGLLFQEDGLLASDGV
HLTQVGKHLFAHRLTNLIRRTLN
>CR1-H_gag#LINE/CR1 471-1688 [Gallus]
MAAPRRKAAARKNVETQTEVPCTHERKAAAKKNVETQTEVPKQDASAQVSGCSECQSLAFAVLGEGDSTCVRCDQLNDLL
SLVVDLKEEVERLRSIKECEREIDWWCQTLSAPRSWQPAEAPHGARHPLPPCKQVTEGNQQADSVPAAVSPLSSPPPSNN
GEESGGVGQWQKAPARRCRRALPEIPLPPQLPLRNRYSALQGQLDNGGDDGSPQLVVLPKSNQTSLSIKTSSAKKKRRVI
VIGDSLLKGAEGPICRPDPLHREVCCLPGARVKDVRKKLPSLVRPSDYYPLLLFQVGSDDIGRTSLRTMKKDFRALGRQV
KGSGAQVVFSSIPPVIGNDEGLNMMGQRINTWLRAWCARQGFGFFDLCSVCTRPGLLATDRSSFSHRWKGVLRRELGRFI
DRALN
>CR1-F_pol#LINE/CR1 1184-4162 [Gallus]
SWGGLLGTWPEVCRWVSPVSKGETDPCPGAGRTCREVFKLDMRGEGDKTRPARDEPGGAIIGLGVRREAQLKCVYTNARS
MGNKQEELEAIVQQASYDLVAITETWWDHSHDWSAAMDGYKLFRKDRQGRRGGGVALYVKECFEVTELMTGDNKVESLWV
KIRGRADKADILVGVCYRPPNQDEETDELFYEQLAEAARSPALVLMGDFNFPDICWEYNLAQKKQSRRFLECMEDNFLMQ
MIREPTRGAAPLDLLFTNREGLVGDVEVGGCLGQSDHDMVEFSILGGVRRGNSKTATLDFRRADFELFRRLVGRVPWGSV
LESKGVQDGWLLFKKEVLKAQEQAVPLSRKMSRRGRRPAWMNRELFLRLQEKKRIYLLWKKGRATRKEYKEVVKMCREKI
RKAKAQLELNLAAGVKGNKKLFYKYINSKRRTRENLHSLLDEAGNVTTEDKEKADVLNAFFTSVFKSQTSYPQVSPLSDL
AALAGEQTKPPTIQEETVRDLLLQLDCHKSMGPDEIHPRVLRELAEVIAEPLSIIYQRSLLTGEVPEDWRLANVTPIYKK
GCREDPGNYRPVSLTSVPGKIMEQIVLREITRHVRDNRGIRPSQHGFTKGRSCLTNLISFYDLVTRLVDEGKAVDVVYLD
FSKAFDTVSHSILLQKLAVRGLDRYTLGWVRNWLEGRAQRVVVNGVKSSWRPVTSGVPQGSVLGPVLFNIFIDDLDEGIE
CTLSKFADDTKLAGSVDLPEGSEALQRDLDRLDSWAEANGMGFNKTKCRVLHFGHNNPRQRYRLGAEWLEDCVEEMDLGV
LIDARLNMSQQCAQVAKKANGILACIRNSVASRNREVIVPLYSALVRPHLEYCVQFWAPHCKKDIEALERVQRRATKLVR
GLEHRPYEERLKELGLFSLEKRRLRGDLIALYNYLKGGCSELGVSLFSRVTSDRTRGNGFKLRQGRFRLDVRKYYFSERV
VRHWNGLPREVVESPSLVVFKERLDVVLRDMV
>CR1-L3A_Croc_gag#LINE/CR1 222-1310 [Crocodylidae]
MASDGAVVVTCNGCATFSFLPEARRDFLRMKCKLVAVLEEKIRGLEGQVLTLRSIREAEEFLDNQIREASPPQIQERKEL
ATKEPEREETGEEAWQFVTTRGKRTRRHSTQLEAXEDGQAVTTREKRTRRNSTQLEVSNRYQVLSVETAENISEDPAGRT
ERRAVRDIPVDGCSAQPARRSSMPTKRSPTIQGRQTILVGDSILRRMERTFCKGQADNRTVCCLPGAKTRDATLRLDRLL
KSAGKDPLVMVHIGTNDTASRDTSQIIDDFRELGRVLKEKNVQVIFSEILPVPRAKEDRRQKILEVNRWLGKWCKVEGFG
FVEHWSTFYGEKGLYSLDGLHLSRRGTSLLGDRLARLVRRALN
>45914460_Mesorhizobium#DNA/Merlin gi|45914460|ref|ZP_00192876.2| COG3677: Transposase and inactivated derivatives [Mesorhizobium sp. BNC1]
MKLDHPIFTNVDAAREHLKAQRWPHGPVCPHCGNTDPARITKMEGKAHRPGLYNCMECREQFTVTVGTVFERSKIALNKW
LLATFLMASSKKGMSAHQLHRMLGVTYKTAWFMAHRIREAMKEDVKSSGPLGGEGKTVEADEMYIGKRETPRKLARGRIA
NPTKSGKAGGAQKRIVVGLVERGGKSRMFHLNDATKETVRDVLVRNADRKSILYTDESRLYTRTGEEYAGHKTTKHSAGE
YARREGDVVVHSKYD
>CR1-Y4_pol#LINE/CR1 fragment; 3'end 2-1141 [Gallus]
AFYDVITGWVDGGRAVDVVYLDFSKAFDTVSHNILVMKLRKCGIDEWTVRWIENWLTGRAQRVVISGAESSWRPVTSGVP
QGSVLGPVLFNIFISDLDEGIESTLSKFADDTKLGGVADTPEGCAAIQQDLDRLESWAERNLMRFNKSKCRVLHLGRNNR
MHQYRLGADLLERSSAEKDLGVLVDNRLAMSQQCALVAKKANGILGCIKKSVASRSREVILPLYSALVRPHLEYCVQFWA
PQFKKDRXLLERVQRRATKMMRGLEHLLYEERLRDLGLFSLEKRRLRGDLINAYKYLKGWESSGWGQALFSGAQRQDKGQ
WAXTGTQEVPYEHEEELLYCEGDGALEQAAQRGCGVSFSGDIQDPPGRLPVRPAVGNLL
>Copia51-PTR#LTR/Copia 42-4145 [Populus trichocarpa]
MASENSSILSFNTMVHMVTVKLSSTNFLLWRSQVVPLLQCQKYYGYIDGSTLMPSATTDSTAYNLWKQNDQLVMSLLLSS
LTEEALSITIGFTTSRDIWNAIETAFSHKSKARELQIKDELHLMKRGSRSISEYSRVFKAHCDQLSAMGCPVEDTDKVHW
YLRGLGHEFSSFSTTQLSLTPIPSFKDIVPKAESFDLFSKSIDYTAGGPSAYMVHSSAYSNRHARPYNNQNRYKGGHSNG
GNRGKQQSRRSPRCQICREEGHYATNCKIRYTKSDANLVEALATCTISNDTADWYTDTGASAHMTPDVSQLDSIEPYTGK
DRVIVGNGSSLPVTHMGSCSPTPTLQLKDVLVVPNLTKNLLSVSKLTNDFPLAVLFTDNKFIIQNLQTQKVVASGDRVDG
LYVLKRGHHVFSAIINKHNLCNSFDIWHARLGHVSPQIISMLNKKGFLSLTSILPNPSLCVSCQKAKSHKLSFPLSDSRS
QTVLGLIHCDLWGPAPINSISGYRYYAIFIDDNSRFTWFYPLKNKTDFYHTFIKFQTLVENQFSAKIKTFQSDGGGEFTS
NIFQSHLDKCGIHHQRSCPYTPSQNGRAERKHRHITETGLTMLFHANVPLNLWVEAFSTAVFTINRLPTPVLNGVSPFEI
LYGKSPTYELFRIFGCLCFPYLRDYTKHKFEPRSLPCIFLGYNSSYKGFRCLDPKSHRVFITRHARFDETVFPSSSSHMQ
PSPALSDYISFHDPSSSNSPLSSTHSSAGSQSLPSITPSIPCKSCALELPQSPPILLPPVSPTIAERVSELPVESTSRIE
PFSDIPIAPAQHSSSNQNSHSMITRGKAGISKSKHYNYVCQIPASPLLSSLLAMKEPKGFKSAAKSPEWLAAMDDEIRAL
THNHTWELVPRPPATNVVGSKWIFRIKYHSDGSIDRFKARLVAQGYTQLYGLDFHDTFSPVVRASTVRIVLSIAVTRGWN
IRQLDVKNAFLHGLLQEEVFMEQPPGYIDTSHPHHVCRLKKAIYGLKQAPRAWFHRFSNFLLTIGFTCSKADYSLFVHSS
DNGIIYLLLYVDDIVLTGSNASLIDTFIHKLQQEFSMKDLGNLHYFLGLEVTQSSQGLFLSQVKYARDILIRAELHDSKP
IATPMIVSHHLTSDGPLFHSPTIYRSLVGSLQYLTITRPDITHAVNSVSQFMHAPRESHFQAVKRILRYVKGTLHFGLSI
SSSSHLNISAFSDADWVGCPETSRSTSGYAIFMGDNLISWTSKKQTTVSRSSAESEYRALALTAAEVKWLLNILHDLRIQ
LPAQPTLLCDNTSAIFMTRNPVAQRRSRHIDIDVHFVRELVCNGILQVKHVPSTLQIADIFTKSPSKSLFLLFRSKLRVL
PTTLDLRG
>BEL-5_AA#LTR/Pao 1138-5280 (large internal deletion at x) [Aedes aegypti]
MVKPEEFKELKKQEKQLMGIIAGIARFVEKFQKGRHEPQIDVRLETLEEAIKRFYSVRRKIELAYEDEDGAGEKIAENTR
AEREKRERQFEETFEAVQEQYFEVKTALIQLRPKVENSRPAGGNNAAETQPASRVKLPEIKLPSFSGRIQDWTSFRDTFR
SLIHNNQQLADVDKFTYLRSSTSGEALQELNSVELTGDNYEVAWKLLEKKYENKKLIVKALLDALFAVEPMRKESCEALN
HVISEFDKNLLMLNKIGEQTKGWSTILAYMVCSCLDSTTLRHWETHHNSKDVPKFEDLMKFLRDQCAVLQSIAPAKAPAG
DNSRHRMSTTHTSSQLQRRCEFCGDSYHIPFKCGRLSNMTVAQRAVEINKKRLCRNCLTAGHFAEGCSRGSCTRCGRKHH
TLLHFEGSSSGGRQPKQSGPANSPPSGTQAPNRSNPAPAASQQQSQQQNRSKPQGQTQTSTQPATQTQPTQAYPVIRSQD
THPQPTTNSQPAISLKSTGSSHSGGTTRQVLMSTAIVKVVDRFGNTALARTLLDSCSEFCYMTCSFSRKLKFHEQRDFLQ
VQGIGNSSVTSTKAVEAIIEARSPSISSFGERMQFHLLPKITQTLPLKPVRVELCEIPTEVLLADPTFGEPGPVDMIIGA
EFYFDVLRAGRRKLSESGPTLQETVFGWVVSGRVPETTSVMPTTASYVSTTVDLQDLIARFWELETCHVNRTHSVEETAC
EEMFNKSTVRDQEGRFVVTLPKKEHMLERLGESRNIAMKRFIGLERRFTMNAELKEAYKEFIHEYLLMGHMKEVDGEQPT
ADPVYYLPHHAVLRPDSTTTKLRVVFDASCKTSTGISLNDALMVGPVVQNDLISTILRFRHHRIAVTADVAKMYRMVRVP
EQDQHLQRILWRDTPEEPVKTFELLTVTYGTASAPYLATRCLKKLGEDSVSTHPIASRVVQEDFYVDDMLSGADTVNQTR
KLMNEVIELTNTVGFTLRKWNSNSAGLLSKLPKHLRDERTVLDLDSSNATVKTLxLTSAVRGKFWPVHINSLVRKVIHDC
IPCFRNKPKVLEQIMADLPSVRVNPAPPFMNVGVDYCGPFFVNYPNRRASPVKCYVAIFVCLVVKAVHLELVMDLTSQAF
LAALKRFTARRGRPKLIKCDNATTFVGAKRELTELHRLFHAQKFQDRLIKDTSSDGIEFRFIPPRTPNFGGLWEAQVKSF
KGHFKKAIGTKVLKVDEMLTALAQIEAVLNSRPLTPISNDPNDYEALTPGHFLGQRPLTAIPERDLQDVSTNRLDKWEDA
QQVAQQVWSRWSTQYLSDLHNRTKWTKQRDNIRVGMMVLLKDENAPPLKWHLGRVTKIFKGSDGNIRVVTVRTKDGCFDR
GISKVCPLPIRDNEDTQQLSSA
>BEL-4_DEl#LTR/Pao 483-5798  [Drosophila elegans]
MVNPGDAIQPQNDAPSDIEFYRAKVRSVLRQLNAMKDYLTAGATEQFDESDVLARLEWVNSMNLEFDSAQTSLEKLDFSE
ISKDTRFEFSAILMDLKAKLNRALAALRKLHLPGSTAANSTSFDIINNADLSFRFRKPRLPNLEIARFQGSYSEWPDFIA
TFTTVIGNDDELSDIEKLQYLRSSLGGVALETIRSLEPSNENYKKALNLLINRFDNKVLHFQAHVQAIFGLKGVEKGSAK
GLRELSDWMNSHLRAIRTLATTQQILDGFLIHIVTHKLDQRTREKWEDDLSISELSTWDAMESFLEKRCRMMENLDQAVV
IQTPHHQVGKSMHRYNPSVLITSATNSNHPICLFCDARDHYLPKCSRFLSLSPNLRYREAKKMHLCLNCLRKGHSLQQCK
STHCKHCRMKHHSLLHIIPESSIPSTSVSSPSSDPSISSQPLPSTSSSLVSCSSPLSQPNHHLTHSPPQTLNTMPMNYVL
LPTAIIYVKNRVGAFMPCRAILDSASQLNFITTRLASQLNLKLRQSHTLISGIGESSMNSDKAVDILAQSRDASYRASFA
AVVTHSITDYQPNFNINTTGWRMPQNISLADPHFNQSQRIDLLIGAGLFFEIIAKGKINLDSTLPTLQNTKLGWIVSGGM
SSMLNRKSVLAAIVKDPADHSDDDTLAAVVKRFWEIEDISSEKPSMLAEDLRCEQHFKENCIRLENGQYSVRLLSTLGFE
SLGDSYCLARRRFKSLESKLNKNPNLKEQYSAFLQEYLNLGHMSLALRDPAVPQFFLPHHSVQKLESTTTKLRVVFDGSA
KTTSGIALNDLLLAGPTIQQKIFNILLRFRFFKVALCGDICKMYRCVRVSYPDDFLQCIIWRENSTDKLSVYKLNTVTYG
TKSAAFLAIRAMHQLSYDEEESFPVGAKIVRRDFYVDDLISGGDSVEEVKEIRHQVKELLARGHFPIRKWCSNEASALEG
ESDRDKEQLIKFHDGSAIAKALGLVWDPSSDNLLFNFSQILSSQRATKRIVLSTIAKFYDPLGLIAPIVTKSKIFLQKLW
STNMDWDDTLPEPLLSSWGELTSQLSIVQNLKFPRFVMQSQASVEMHGFCDASTAAYGACLYLRSEANGNAEAHLLCAKS
RVAPLKALTIPRLELSAACLLAELIVNVKETIGFDCTFHCWSDSSIVLAWIRQPPREFNVFVSNRIAKIQEMTKGMAWHH
VPTDLNPADVVSRGCTPKELLEHSLWANGPPFLLKGASNWPSLLDAVKNLPERRSTALIGTVGTDISINCKFLNSFDKLQ
RVFAYIYRFISNCRAKSLPSTIYLTVDEISFGTVLLLRSIQQVHIAVEYEVLSQGKPCPPKSKLISLRPILSSEGLLRVG
GRLQNASLDYEAKHPILLPKDHPVTRAIIVYYHEKYFHAGPQALLAALRQRYWPLGGRKFVASVINKCVRCFRMKPVAWE
HVMGSLPADRVQPNPAFHTTGVDYCGPFYHKSEARNKAPHKCYIAVFVCFSTKAAHLEVVQDLTTDSFIAALRRFISLRG
SPRTIWSDNATNFVGAKRELAELKELFLSEPHTASITSSCLANGIDWKFIPPRAPHFGGLWEAAVKSAKFHFYRVVGAAI
LALDELRTLAYEISAILNSRPLCPISENAENFEVLTPAHFLKGSSYTRFPEPDVTHLREGRLSSWQRITQMQQHFWKRWS
REYLSLLQERSKWRIKTSNIQIGRVVLLQEDNLPPMKWQLGCIHEVIPGKDGVVRVAVVRTATGLTKRAVTKLAALPIES
HLVGTVPLPTGG
>BEL-5_DBp#LTR/Pao 1614-7005 via tfasty with BEL-1_DPer, 2 frameshifts. [Drosophila bipectinata]
MPTGDDQKPRPIPTIRLDRSQSASPRTPLLKPKAYSAIPRAKSDESVNTIPGPSQRQTRSVAKMAQSAVDVALKKFIATT
DRISQFEANINTPGARETEGGSQYICEVHRDQIRALWEKVEKSYESCSDLLAVSDDNAATSTVLESKYSYCYSVYSRCIA
QLREKIASQSTQASVNVHTPAPTGCRLPPVDTEVFAGDYLRWPTFRDLFTAIYIQNSRLTPVERLFHLLSKTSGDAHAIV
SKAPLTHEGFVVAWQSLTDRFENRRLLVNSQLKILFNLQAISQESGVALKELQATIQSCLTALAMSAINVEAWDCLLVFM
ISSKLPKVTLSMWEQSVIHKAEIPTWKELDNFLTERHRTLEAIDDVRPSGSGQLPPRSGTPTAPARRLNSYETRVVPGPK
GCDLCSRENHPIRLCPRFLEMDVNGRSDYIKRKQLCLNCFARGHQQRDCTSAHTCFTCHSRHHTLLHRGNPFATAPSPPT
TARARPAQTARSTNGSEDQSDVQVCFASGSGAVLLGTALINVCHLGCSFQARALIDSGSEATFITERLFNLVKLPFKTIQ
AQVSGLNQTISAQSTKLCHFSIRSPSRPGLQLETAAYVLPQLAGNLPSYPIPRDRLKGLPDIPLADPNFFESSQVDVLIG
ADILPSILLGNAKANICGSLLGQETIFGWVLTGPLSPANPRSVSVFSTRVAPSLGDSLDQLLTKFWEVEDVPTQISSESD
SVCEHNFVQTTRRDECGKYVVTLPLRDPGQKGSELAASRSFALAQFLRNEQRLKRDPPLKARYDSVIQEYIDLGHMTEVS
PASNSATYYLPHHAVFKPESTTTKVRVVFNASSPSANGTSLNDILYAGPVLQSDLTIQILKWRYFRFVFNADIEKMYRQI
WVDPKHTPLQRILFRNPDGDIRDYELKTVTFGVNCAPFLAIRVLRQLADDEESKYPQASQVIRQFMYVDDVLAGADSKTE
AQAAIRELKGALESAGFPLRKWTSNSKAILADIPSDHRLRADFLDIDAESTAKTLGVRWKATTDEFFFVPPELTSGSAFT
KRQVLSQIAKLFDPAGWLAPFIVRAKMFMQDIWLLDLGWDDALPQDFCQRWVDFLKNYSVLDQIRVPRWVAFRPHLKVEH
HGFCDASQKAYGAAIYVRVEVGSTVIVTLLTAKTRVAPVKTVSLPRLELCGALLLSEMATAVLPKMPGAASALYCWTDST
IVLAWLHKPACQWTTFVANRVTKITQFTDVQKWAHVRSEQNPADLASRGVALQDLADNQLWWHGPDWLQRPRSDWPTQGN
DAPVTELEKRAVKVHVAKAPPEDLLERFSTLDKALRVLAYVNRFIQRARKIRPSFEEHLTANEVTSAERLLVSVTQRRHF
VSEMGCLSEKRPISASSPIQNLNPFVDSQGLMRACGRVTSSELLQYDERHPIILPYDCHLSRLLVHFTHRITLHGGSQLM
IRLIRAKFWIPRVRNLVKSVVYSCKVCVIHKKKLQTQLMGELPKERTSFSRPFTHTGVDYAGPFEIKNYTGRACLITKGY
VLVFVCFSTKAIHLEPTSDLTTEKFLAAFARFVSRRGCPRQVQSDNGKTFVGAAALLSRDFLQSLKGAVTGAYSHQQLLW
HFIPPGAPHMGGLWEAGVKSFKTLFYKSTATRKYTFEELATLLAKIEACLNSRPLAPMSEDPADLLALTPGHFLVGGPLL
ATVEPEIKGDTNSIINRWQHLKALQQQFRLRWKEEYLKELHKRNKWRAPTRDLRVGDMVVIKEDNLPSNEWRLGRVDAVY
PGSDGHVRVIDIRTARGLVKRPVAKVVLLPLDASAYPQ
>BEL-13_DAn#LTR/Pao 203-5512 via tfasty with BEL-5_DWil, 1 stopcodon. [Drosophila ananassae]
MHADASEHARQLEWSMNIEVCQICGNKNETASENWVQCDVCGRWYHFECAGVEDDIESKDWSCDFCLAGCSHIAPYGSMQ
RSPVQPQTREDAMATPEPHDKALAVDTLIDMAGSGENTHAQEGNPERNRNQLLLKMLEEKRQSEAKFIEEKYKLLMQMNP
TDVPEAGMVRATDSPTSSQIAARQAIPKDLPTFSGDPEEWPLFISTFEHSTTAAGYTNVENMLRLQKSLKGKARELIRDK
LLLPNLVPDVISTLKMFFGRPEHILEKMVEKVRRLAPPKDRLEALIEYALAVRNVCAIMEACDLKAHLNNPMLVKELVDK
LPNQHKLNWAMQPRDDRIAAVKAFSDWLYKIAEAASSVVAPSFYKSGAVNTHNSRATQGQARSNASQTEAAQQQVQSGCV
ACGDISHRPPQCQVFLNLDTQHRWQIITSSKACFCCLKVHRNRCRTGNCGINGCTRRHHELLHTEQGSTQNLVSTHQDDN
YGSQFFRIIPVKLRNGSRMIEIYAFLDEGSSVTLVDASVFQRLGIQGQAAPMCLQWTAETTRIESESVKASVQISETNSD
RFYWLNNVQTVQNLALPKQTVEMKELRSRFQHLRDLPLESYSAQPTLLIGSNNWKLAVPRRIREGKWNEPIASKCMLGWT
IQGSTNPQRSIVMHHCDCDWQELHDDIKNHYSLETLVPRKLYSAEDKLAVKILETTCQEKSGKYEVGFPWRGGIDKLPES
RGNALKRLTCIKKKVSQEPDMYDKIDAQVRNLLDKGYAVKLSKEETCRENSRTWYLPIFIARNPNKPSKLRLVWDAAAKS
HGCALNDYLLKGPDCLNPLIEVLLAFRVNKIAICGDIAEMFHRINIREEDMHAQRFLWYDRSSDKVETYVMRAMTFGISC
APFIAHFVRDKNAEAHQEDFPLALNAIQKAHYVDDYIDSMRNEQEAIQTTRQVIEVHRRGGFEIRNWSSNSKEVLKSLQS
NGNVGSQEPVDFCSTEKILGMSWDPHKDVFKFLCRFARLKRDVLAENIVPTKREVLQVLMSIFDPLGFLSCHTIGLKILL
QRIWRLNIDWDQELPEKILEDWRLWKTLLGQIRIFEVPRCFSPDTSDPRQTELHTFVDASEYAYSAVCYLRVAMDAKVDV
SLVIAKSKVAPLKPLSIPRMELQAAVMGARLAHKVMSTRNLRIDNATYWSDSKTVLQWLTMDPRNFHQFVMHRVAEILET
TQVEQWRWVPSKLNVADGATKITDQTQQKTWITGPGFLKAESSHWPTSTKQESIIDTSEIRKHVMTTCARSVVMFNAHHF
SSWRRMYRAVAIIFLFVDRLRAKCAKQDMPTATTMDHVRKAKILLYKQSQAIAFAEELKVLSVGATLRKGNRLVGLNAYV
DNDGVLRTRGRLNSIDIAEDAIILAPGCRITNLIVRSFHEKYHHLAHETAINDIKASFYISRLRVLYKSVRSTCQRCKVD
SAAPRPPQMAPIPRARIGSFQRPFTYTGVDYFGPLLVNVGRRKEKRWVALFTCLTLRAVHFEIAYSLDTSSCIMCLSNFM
ALRGTPKEIFSDNGTNFRATEKAVREELKKIEHDKITIKFDGIKWRFNPPGAPHMGGAWERLVRTTKGILKNICPSYSFN
DEGLRNALMEAQFIINSRPLTFVSLDTEDDAALTPNHLLLGSANGYKPLPKEGMNLQRRWIETQRFGDRFWQRWIKEYAP
VLTRRTKWFEKVPPITIGSIVVIVDELLPRNLWLKGRVIDTMKAKDGQVRRVTIKTQHGILERPATKIAVLDVGLEDGNx
PRTGINYGGG
>BEL-9_DBp#LTR/Pao 65-4895 via tfasty with BEL-14_DWil, 5 frameshifts. [Drosophila bipectinata]
MEEYKLLVAGRRRLKGTITRIVSLAERLPATQSKDGIEVLLERLDFAWSEFEKLGDALSVHDQVDGYVDPDDDNVRYEGR
YLRAREFLVSAKRSLEPQTPSTSQCNDSKGNGGDTLQLLQQQQQMLERIAVSDAASTPISSNGVMDAEPMHNELPKIQLK
RSAGDYKEWPAFRGADGKSGKGRTCHHVAVRGLSQRQYQMSNLAACGSERLRQRRSMAKEKSVCFNCLDRHIKRQCESKF
NCRTCHGRHHTLLHVQPAASAQGFAALRTLQQATVQDVPTGREDQHNQDASRTPSVTVSHIARAHGHNRLHTHKALQKLR
TNMGVAKARSDCIGFVQNANGTYQAAGYYDSGSELSYISERCINALGLARSSSRILVSGISSIKAEATRGITQLNLKSRF
TDSSLKITAHVLSKITSSLQRNNIEPSSLKVFDGFLMADTDFASVAPIDILLGSDYVWTTLTGKKMHDNMGNLIAISSIF
GWVITSVGVNPSPTTTTLFSTCNIDSTLQRFWEIEEVGSYAHKDPHEDTVEKHFLETHKRDNDGKYIVELPFKTANPKFA
DTLQGAQSRFMAVEKRLQRNPDLREKYVKFMQEYLSLGHMTEVKPLSNDSGNLFYLPHHPIVGRKLRVVFDGSFKDANGV
ALNDTLHVGPSIQRNIFAVCLRFRMYRYVFSADIVKMFRQVWVSTDHQNYQRILWREHPTAPLKHYQLRTVTYGTACAPY
LAVRVLEQLAQDHRDEYPTASRILLEDFYVDDVLTGANREDELLANKNELLQLMSHAKLDLDKWVSNSSLICKPESRDAI
STGNERVQGSIKVLGIYWNPTDDTLMYQTGLTSNPNCTKRQILSDVARIFDPLGLLSPIVVQFKIMFQRLWLLDLDWDSE
LPPNIAEPWLKCRADLDTLRKLQIPRFVLSKEDSIELHAFSDASTKAYAAAVYCRCRNKDGTYSVSLMAAKTRVAPLKQQ
SLPRLELCGALLLSRLVRSLKEGLRHKEIQVVAWCDSTIVLSWLSYPPSKMKTFVANRTSEILETLPRHTWHHVSSKENP
ADCASRGMTTSQLLEFHLWWNGPPWLLNDDEYTAKVQNSETSFKFSDHHAQDELRTTAMLTRERMDDSFSAFDDLVERVS
SWQKLVHTVGYVLRFIRRLKKTRNRAESTTLSFEEIKAARLVCLRNAQACFGEDRMLLQTNQPLRNRSQLSKLAPFIGSD
DLLRVGGRLRQSKLPEEVKHPILLPKAHRITKLLLEHEHWVNLHPGTSALFVITRQRYWIIGARNLIRKVTHNCIRCFRQ
RHHTTHQLMADLPSIRITQSLPFVNSGCDYAGPIILKDRKGRNAKKSKGYICLFVCLVTSALHLELATDLSTEAFLAALR
RFMSLRGKCAQIYSDNGRNFVGAKRALDEMQQLLASTNHRDLVSQTLADEGINWVFIPPYAPHWGGKWESSVRSVKLHLR
RIIGNTILTFEQMHTLLAQISAVVNSRPLYYTPDTDVTYLSPAHLLIGRSFTTIPEGDLSHIPENRLDYWQGVQALYQGF
WKRWHQEYLTTLQQRPKWETPQPNVELGTVVLIKDSNTPPASWPLAKVIATYPGADGMVRAVKLKTATGEATRPITKIAI
LPCSETMFQGGP
>BEL-3_DPu#LTR/Pao 1059-7004 via tfasty with BEL11_AG, 1 stopcodon. [Daphnia pulex]
MAPPRNPTPGGSRSAVKGHLTRILKTIKDAESEAMTAKLDVELAGEETKLDEKMEHFKKLSVECQKEMTTDNGANQQDLD
AEYDSVNQMEDEVRAGKNIIILKRQEWKDFKEEERVKEAERRRMQERKDDDDARDQKMQDFMQRILAAQASTTSTSATTS
TTSTTTPAQTTRLPQRQIKPFKGDILEWTPFWESFNAAIHSSSIAAVQKFDYLKQYLKGEAFLCVENLELNDTNYQKAID
ELKRMDGKPEVLIEAHLHKLNTLQPVKDMSDISALRSLQLRLQSHINALQTLGVDKSTYAGLLGSNLIHLLPYKLQVKWT
ESASNKVTDIDGLIAFIIQQVEAAERLNRLREQVAKPSHPTQSKQPQATPATASQLSVGARPDPAPQNGKSFKQKTWNNT
APPKTGPKRYPDCSRPCIFCGEIHYPSHCTMGLKEKKAIIIAMKRCFKCFSDTHETVNCTSTNECRRCKGSHHTALCDKQ
QTRFSSQPASGTTVTGSSAITTTACANGFSDLKVKTATVIVARPNGEETRAILFVDDGSHRSWVTKEISRRLNLKIVAVE
NIATRVFKKKEANPAEITNVVEMSVRGTWYGAPMVKITALESDYLADTGPYGTADFARKLWMLDIKMADDRFERKEKEET
IGILVGVDQMFQILTNEPAIQSPCGLRAYNTKLGRMIAGPSKEKPSIQGQKVIRQLIQVQNHPMPRVTSFTTTCFSSTKI
HSREPEVLPGNEETEICSLQRSKSEIGAVNYNEEHVNFSAAPTTKKDKHKASKIELKQQTNFDLSLFWRLENFANLDDGG
AVESENRFDSFSDEITRLEDGRYCTPIPWSTDRWRLERYFHLAAGRLESMVGKLRKIPGDLEDYSKEIELLKNQFFIEEA
NFNYDGLHTYLPHHPVYRMDKNTTKIRPVFDGAAKSKFGPSLNDVVETGPNLNPDLLSVLMRFRMYRIAWIADIEKAFLN
VALQPEDSKAVRFLWPKEPAIPGSPLIAYKWKRVPFGLSSSPFLLRVTVNKHLLSVQSRFPETVEQLREQLYVDDYLGGA
DDEPAAIKRVEETDEIFKEAKLNMRSWATNEETTRQLLEEKGLCNKVVGILSPTLDGQQKVLGIRWDTESDTFKFDPSTV
VTAVEDLSEIVTKRKILSISARVFDPIGFLSPTVLLLKIIYQKLWEKELGWDDEAPLDIQQSWKLVMSGLKEFENLQIPR
WIGYSKHKITSAELHVFGDASESAYGAVAYARLQKENEEPYVILLVSxTRVAPLPKKKVTLPRLELLSSLLAIRLGEKVR
TSLHIELRTRLDSGDPNRWKPFVRNQVESIRKASNPDWWRHCPGIQNPADLASRGAPALVHSNLWWNGPTWLSRKENEWP
DSPETEDKIQEEIEVEANGKIVSVVAAIIDPVQPIEWHLDKISKWQKLLRRTGWIVRFINRIRKREWIPQEEIIQEVIPV
NGKEMTVDQMTVSELHEAELLIYRQLQRDRYPKAFNSLQAKLPIHPKEKIASLNPIWDERDKLIRISGRIALALRDREIE
PTILLPANHVIVSLFIIDKHQKLDHAGVKTTLSELKERFWIVKGRQMTRKACFRCVKCRKLTSPPFSELSAPLPLNRLRQ
AQSFHITGVDFAGPLYYKPPQVRKRRKKTTEVQPIIADPAVVEEDSEEEPLAVEEAPNPNPDPAVPADEDIELQELLFDD
LSPQVVTSSKHLKSYVCLFTCAVTRAVHLELTKDMTVRSFLLAFRRFSARRGPVSVMYSDNAQTFHCVARHLKVLRSDPS
IHDLLAMRGTLWIFSASLAPWWGGFWERMVRSVKDLLRRSNGRSCLEYDELEVSLIEIESVINARPLNYVGEGIDDPLPI
TPNQFLNNRRSNCATPEPAINLMAPNSTSATLVQLDKNRRDYVSDICQRFVKDYLLQLDNFHSKGKATRKIRFGEVVVIH
DEHTKRLMWKTGVVKELIPSRDGLVRSVTLKTANGNLINRAIQCLHPLELREDQDEDVDVVD
>BEL-2_Deu#LTR/Pao 31-5697 via tfasty with NINJA, 6 frameshifts and 6 stopcodons. [Drosophila eugracilis]
MPTSHSPRRSPRIGQTGAPATATTTTATTSAGTPKNVPGLSGGELQRPRTPKQPGLIPSGAPKPDRSGQDTDTTTAKFAA
LMERIATLERELQKARSGEGQDAAARDPVRNGSSGIGASGAANAPPCLSGTPGQNLSGNLPPLLSGNLAPNLAESVTPFL
HEQLPPLLSGNLPPQSSGNLAIGQQVTLSTNSTTLSYSTPCCVTATVQPALSYMQATREPLRNLMVPPQSTGSYGIASPS
ALIGWTPRRLPDLPEFEGQPEEWPIFQCAFTETTAAYNCTALENNQRLVKALKGEARASVKSLLIHPNNVQAVMDQLRFR
YGRPEQLIRSQLESVREVQPIQEHNIIKIVPFATRVSNLAAFLQSSPNGEQHLGNPTLMEELIAKLPLSKRLDWARHAAV
IGCYPTVAHLSEWLNELAKLVCTITSSDSKDPKRRVLHASTSQKDQDLFEDHPRSCPICEGQHTIKDCKDFIHATPTARM
EYVRKHRICFSCLESGHMSRFCKRNSKCNVYGCQMGHHYLLHDGVGNPTRPSQPHGRPWPNERSDRGRMVHAGADRRKVD
KQVHQPDDLAQRSPLTASAQTQDAWRKRDEGRQPSDGNGLPHRNLSCVDPDGGHLLFRILPVTLYGEDTQLDTYALFDEG
SSVTLIDEELTRSLNLKGESRQLNIQWFGGKSAKENTKMVSLQISEAGRPKRHALKNVYAVSNLNLPMQSLRREDVKAAK
ASARLPMKPYRNAVPRILIGLDHAHLGIPMQNRSFGAGGPYAAATKLGWVVFGPVRSQMSSPMQRSCLLAVPQYDHLEKM
VSDYFEIENFGVKPAPPVAASGDARALGILNETTRRVGERYQTGLLWKDDKVSLPDSYNMALKRLVGIERKMRRDDSFAR
AYKSIMEDYVNKGYARRLEQQEVAADNRDKIWYLPHFGVENPNKPGKIRLVFDAAAKVGNTSLNSVLLKGPQQFKSLPAV
LFHFREGAVGVCADIKEMFHQVLIQPQDRCAQRFLWRNGDDRRDPDLFEMVVMTFGAACSPCSAHHVKTINASRYAQADP
RAVQAINEYHYVDDYVDSFSDEKEAIAVSERVRKIHAEAGFDLCRFSSSSESVVKALNPLGSNKNVEWNEAEEKILGMYW
HPAMDDFKFSVKYLRVPSRVMTGERAPTKREFLSLVMSTFDPIGFLSCFMVTAKLLMREIWRRGVQWDEPLPDELAKAFE
SWRLEMDYVRDFRCPRYYFGTGCVRELQLHVFVDSSQSAFAAVAFWRATYDNDDVRSYFVCSKTKCAPMKTMTIPRLELQ
AAVLGTRLMDTVRREHDVSISRCVLWTDSKTVLHWISSTHRRYKQFVGNRVAEILESTEVSQWRWIPSAENVADDATRPQ
RHVDLSQGARWMSGPSFLRESEEQWPSHLQGSRQSTLRxEEMPCEFTLVIANEFIFLQRFSNYNRLVRTTAWILRFIRRC
RGLSDESEAYGITATECAEAERKLIQRAQADTFADEVQGKAVAKGSQLRGLSPYVDHDGIIRARGRIDAAECVPFNARRP
IILSHKHALAEMIVRHYHRKMKHQNLDATISEIRTRFWITNLRRVLRKCYGNLxLMQTPESTTNSAIDGSVARGPAGAEW
MAIQVYWLGLLWSAVCDDxTSHxEEVGRTLYLSNHQGCPPGVAHDLSTDSCIIAMRNFMCRRGPVVRLRSDNGKNFIGAD
REARKFDEVFEPEKIQDELSSKGIEWIFNCPANPAAGGIWERMVQCVKKVLAHTVKEVAPKEHVLESFLIEAENIVNSRP
LTHLPVTVDQEAPLTPNDLLRGVANVPDLPGDRGEQPVKALLGSSGVSHGxxETDFGNVGYMSIYRRLFAGRNGASMSSL
CAQGISCTSVIRPSLVENGGKASWRKCAQERMEYHDERRYALPMAIELS
>BEL-2_DEl#LTR/Pao 1189-6313 via tfasty with BEL-14_DAn, 2 frameshifts. [Drosophila elegans]
MATKDIEELKHQRDVCMKSINRTYRHLKEAKLSVNPVELECRLEILNTHIENASLLQNQIEVKDTKDVYREELEERAVMT
KSLLISILNKCKQNNIEKSAPPANRPPQCRLPSVALPTFSGKHSEFKNFISLFETFVDKDDTLHDIEKFNHLISCLAGDA
LGTVRAFQVTAENYPKALASLKRVYDNDCLIFFDNISTLFNLQKIPQPSATALRTLIDTVTALYDSLLSIGDDRRITNAI
LIHLVMSKVDAGTKRKWEEQLDYTSLPLWSECEAALNRRYQHMVAEEASKPKTVQQTQSNPKKNGNRSFSFVAARNDSVQ
CMYCNSAEHQIGNCASFAALTVQQRFDFAKRAPLCINCLRKGHTVEKCKSNRCRVCDSSHHTLLHIYPQTQNLALPPPSQ
PTLMQESPSTSHVLHANASDRVILATAVVSVQTKSGEFVLARALLDSGSQINFVTDELAQRLKITREDVCMSLRGIGGTN
AQVHKKIHTIVKSRVGNSQLSSDFWIMKNISGYHPDQAVNTSGWRVPENIQLADPFFFKPQKIDMLIGAETFFELLSIGQ
IKQGPEFPILQKTVLGWIVSGRCASENNKNAEKMVHLSCQEEALESIDTTLQKFWSVEDLPPKAKVHTPEQQLCQQHFEK
NTQRLSSGRFSVRLPFKSDPNTLGSSYEVAKRRFLSLERKLSKDPSLKKMYIEFMEEYVSLGHMSSTNDKIPNTPHYFIP
HQCVLRPQSTSTKLRVVFDASSRTSTQVALNDILMVGPTIQEELYSTLLRFRLHKFALAADVKKMYRQVMVDEADRNFQL
IVWRRDPSESLKIFKLNTVTYGTSPAPFLAIRCLMRLGEMAQATHPKAAKVIQNDFYVDDLLTGAGCVEDLQSLRDEVSQ
VLQEAGFELAKWFSNCPELSASDSAVMPLMADSDVTKTLGVVWLPVKDYFQFRLDDSFLDLRATKRNILSVTARLFDPLG
LLCPLVTKAKMLLQELWLRKLDWDESLPMQLLTSWETFKATLLQLPKIKVSRFVNTDPQVPIQIHGFADASMRAYGACIY
VRTQTAEGLKVSLLTAKSKVAPLKTKTLPRLELCAAHLLADLYNRVRPLLNSPIENVFLWTDSEITLHWIKTHPSSLSVF
VSNRVAEIQEWSEKAIWRHVPTKVNPADIVSRGCDVEELTTSIWFGGPSFLLDSENNWPVNKHFELPADVMSMELRKSAI
ALVVSPEPNYVLQKIESFSSHLKLLRVFVWVFRFIQRCRKVSKPFEKSISPRELDFAFDKIVEVIQFHEFRDDISKIRKN
KPVATNIQKLNPFLQENKLDWCSSTLLRVGGRLLNAPIPYEAKFPLLLSKSSQFVRSYVSYLHVTNCHAGPRALVSRLRE
KIWLVNAQEVCRRTVRSCMRCFRCKPQLLTQIMGNLPADRLRALRPFNICGVDFCGPFSTTYRIRGKPPYKSYVALFVCF
ASKAVHLELVSDLTTDAFLLAFQRFVSRRGIPEKVWCDNATNFVGADRHMREFRARLEEQGGGIETFASKKGCEFAFIPP
RAPHFGGLWEAGVKSAKHLFLRTVGQDLLTAEELGTLLTSVEAVLNSRPLGALSSDPNDGEALTPGHLLIGGPLLAPPSA
ALPDQISLTCLRRWRGVSSLRHRFWQRWSREYISSLQQRSKWHQGEPNLVVGALVVVAEDNLPPQQWRIGRVVAVHAGAD
SKVRVADVRTQDGEYRRAVHRLALLPVLG
>BEL-2_DPer#LTR/Pao 87-5342  [Drosophila persimilis]
MKALVHRLIQQRGACKSQLTRVAAEAQEFVQSCTSVQTLEHKLDRLVATFNRFMELSEELVQYNDEDEYVDPDLDIPEYE
KRFFSAHSIFTEAIRDRSSHENEHDNSNLLLSXTVERLFEGQTQLLERIRDSSGTTELQFEKIRIPTFSGRYEDWCQFSD
LFLGSVDKKSSLSKCQKFHYLKSYLDGEALSLIKHIPVSDANYQDAWERLENRYNKKSLIARSFIQNFLSLPTAKGSNIA
ELRKIVDTADESIRGLHALSCDSRDVWLIHILLSKLDPECKEAWATSSESCKENVTINDLFGFVFARCDALESCQDPKLI
QDTHTVLNKRRAISHHVDVPNTSARDCVYCHEQHSLYACTQFKALDVVDRRKFARDGNLCFNCLSRSHQVKECNSTNTCR
LCKLRHHTLVHPEDIRSVTASADVNNSADSPVRSSSFPADADPAVVSHHTLERKFVAKSQAILPTILATIVDSWGNETTC
RILLDTGSTITMVAESFIQRIGLPRTHARIPVVGLGANPAGVTRGRATFTLLSRTSSASVVVTGLIMNTLTSSIPAQRIE
SNTPMWKRIRDLPLADPTFGKPGEIDVILGADQLWNLYTGQRKEFGSEYPIALHTNFGWVITGSYHLSSDAHNHALAHHA
HEDLDTLVRSFMDMERVQPSDATIDASDPAEQHFVHTHARRNDGVYIVQYPFKESAPPMGSTLPQALRRFSSLERKFRKF
PALKQQYVEFMEDYIQRGHMEVIPSTTVENGPANHNYLAHHAVFKPDSTTTKCRVVFDGSGEDCNGSSLNSRLHIGPPIQ
RDLLGVCLRFRQHRYVFCTDIEKMFRGILVSEDHTHYQRIVWRKEETATLDHYRLLTVTYGLASSPFLAVRVLKQIAQDH
ADLYPKAAAVLVRDAYVDDIPTGCDSIDDLIALKDELILLLSQAQFKLRKWSSNCWSLLKSLPQDICEYPLEALEGDSPT
QYVKVLGIRWDPAVDELSFKLTIPDATGVLTKRILLSELAKIYDPLGLLAPTTVFLKVLFQDSWLSSVDWNEPLPAQLCA
RWQQFVAEVHLLESCRIPRYLSSPLQATELHGFADASSHAYAAVIYSRVRFNNDYAVTLIAAKTRVAPIKPISIPRLELN
AAHLLSKLMSLVKQALTIPISSTSCWSDSEIVLHWLSSPPRTWNTYVCNRTAEILEACPRSCWQHIRTEDNPADCASRGL
LPKDLVEHQLWWNGPPWLSQSHRTWPPAKAKFALSTEDAERMEVKVKPQVNLHISNEGNDLNCMINKASSWSHLLRTLSY
CFRFVHRLRCKDRLSSFLSSWELQYARSRVIKHVQMEFFQVEYRQLSTGQALSQKSKLIHYTPFVDDQGILRVGGRIGNS
MTTYDAKHPILLPKESPVAVLIARHQHVTSLHAGVEFMFHTLRQKYWILGARNIVRKIVFNCKICFLQRKGTSTQLMADL
PAFRVQPTRCFLHSGLDYAGPVTIKTSAGRTPKFGKAWFAIFVCLSTKAIHXELVSDLTTPAFIAAFKRFWSRRGPISDL
YSDNGTTFHGARKELTEMQRIAVSQSQDEEIANFLTSQDINWHFIPPSAPHFGGLWETGVRSIKLHLRRVIGSSALTFEE
YSTILTQIEGLLNSRPLCAPSDHSLDPLTPAHFLTGQPHMSVPEPSLLDVNINRLQRWRQLQAKVQGFWKRWNLEYLTSL
QPRTKWQQESNDITVDTLVVLKEPNQPPSKWLLGRITEVHPGQDERVRVVTVKTARGVYKRPITKLAVLPLF
>BEL-3_DEl#LTR/Pao 41-4947 via tfasty with BEL-14_DWil, SW:4714, 6 frameshifts and 1 stopcodon. [Drosophila elegans]
MDQLKLLKAARSRAKASITRLLTASQDPRAGSPWELDEITVSLDRLNTVWKEFETLSDKMALFDEEEGYVDPAIDNERYE
DKYLQANTLFHSLKRACEQARESEGESNNGRQSGNLDEASSIASGLGNENLVRFLQQQQELNERLAEQQTTFLRANSTAN
VTQNELPKIHIKSFSGDYKEWPAFKNIFESTIHSKQHLTATRKFHYLKTYITGEAADLMRHMPITDAAYESAWDRLIERY
NRPRHIVNTLLDTFVNLPSTSGADVSILRKVTDGATEIVRGLDAAGQTDRDCWVIHFILAKIDAETRRRWIEGGRDPESP
TVDDLLKFLDRRCEEFELSKSEPDKVFQVGSRQNKAKRSSHALVSTEDGACVKCNSKEHKIFICPKFMDLSVEQRRTFVK
AKSLCFNCLKFGHVSRRCESKFTCRTCHNRHHSLLHVEDSTAHAAVTRTHSRDEEQRDLGAPEDTTVTISNIARVQDTPC
AESSYNGSATTTQPQGLRKSALPTALVLVRNAKGSHTSCRVLLDSGSELSYISERISEHTMKVRAHVLSKITSTLARHNI
NASALKAFDGLELADSHYTSLAPVDILLGSDRVWTVFTGKKLFDSQGKIIAISTIFGWVITSIVTTGSSSTTTMHTAIDI
DASLRRFWELEDVNQELHRKPENDEVEQHFLKTHTRDPKGRYIVELPFKDPNKQFSDTLQGALARFKGVERRLMQDPNLR
SQYVKFMHEYLNLGHMRELPHHPVITQKLRVVFDGSFKDTNGNSLNDALHIGPSILRNLFSICIRFRMFKFVFSADIVKM
YRQILVAAKHCSYQRIVWRDDECSPIKRYELSTVTYGTSGGPFSAVRVLDQLAHDHQHEFPSNPKNSKRQVLSDVARIFD
PLGVLSPVVVQFKILFQELWLLDLGWDTELPPKIAEWWNKCRNDLNALQELRMPRFIDNKEDHIELHGFSDASIKAYSAV
VYSRLVRANGTVSVSLIAAKTRVAPLKQQSLPRLELCELCxPTHSSIKNGLQHKDIVIHAWCDSTIVSAWLSHPPSKLKT
FVANRTTEILDTIPRNAWHHVDTKENPADCATRGLLAAELIEFDLWWMGPAWLQDQEKLMVKLSCQRFCSSISENHGKEE
VKTTALTTQEVILLSPIKHAQRVSSWTKLVRIVAYALRFVQRIKAIKSGTLTNCKGLTFEEMQAARILCLQEAQKCFKND
YNLLMENKPLQSRSQLIKLSPIISKDGLLRVGGRLDNSQLPADVKHPILLPKSHSITRMILEHEHASNLHPGVSALFVIR
QKYWVFGARNLIRNMAHDCITCFRQRNQTAQQFMADLPGIRITEALPFQHSGCDYAGPFILKERRGRNPRKTKGYICLFV
CLVTSAIHLELATDLSTDTFIACLRRFMSLRGKCSQIFSDNGTNFVGAKRALDEMQQLLSSQEHRNTVAQTLATDGIKWN
FIPPHSPHWGGKWESAVRSVKLHLRRVVGKTILTFEQMQTLIAQISAVVNSRPLCYTPDTDLTYLSPAHFLIGRPFTTVP
EGDLTHLPINRMDYWQHLQSMYQGFWKRWHQEYLTSLQQRHKWNSKERNISVDNVVLVKDSNLPPAAWQLARVLEAHPGP
DGFVRAVKLKTSTGEMTRPITKLAVLPNSETVFQGGP
>BEL-2_DTa#LTR/Pao 61-5426 via tfasty with BEL-7_DWil, 10 frameshifts and 5 stopcodons. [Drosophila takahashii]
MAPTNSCYLCSAPDNEEMLRCIKCSSQYHPTCCGLDNCSTTSNWTCACCTEKAAQTFVQQGDPNLTSIQLVQEANKTPTE
SNQPNQSGGKLSEDQRQLMLQQLQEELDVEKEFLRRKFALLRSGVTPTGIETQINQRGQEYANSQLTATGIQFAENNGCS
TPHQPVEPQLITTRQAAFRQMVPRELPSFSGDPEEWPMFISTFESSTSAAGFSNVENMLRLQKCLKGKACDAVRDSLLFP
GTVPDVMSTLRMYFGRPEHILEGVVDKVRRMPAPKGQLEPLIEHALAVRNICATMEASNMLAHLNNPTLLQEIVEKLGPE
MTLNWALHSKQFDCPNLQHLADWLFELADAACRVTTPASRQDSERRSLRQGCLNTHTAVAGSAQQRVEHCIVCDGPHCIS
RCESFAGLPYAAKWDVARTGHSCKICLKIHRNKSCWKKRSCGVNGCTKAMHHPLLHSGSVASSAGEPKNQRHVSTPQSEV
EGSxFFRIVPVTLRGxSKLIEIYAFLDEGSSVTLIDESVFDELGREGWHSQSCLQWAGQVNPPRKEPPSGRLNLRISGTS
QNSKAFNISNVHTVAKTWACQSRPSIVEELRSKYRHLKGIPIKGYRQAQPMLSIGTNNWNLIAVPRRIREGKWNDPIASK
CILGWTVHGGSRQPGNRLVSMHHCECNWQDLHEEVKEHFNVEDKVSTQRKSSFQARTSRAVRNPRGDWSTHDGDKYEVGL
LWRNDHRTLPESRTTAVRRLKCLQRKMHSEPELADEIDEQIKNLLKKGYAKQLSGEEAEKEAARAWYLPIFIARNPNKPE
KVRLVWDAAAKAHGILLNDLLLSGPDLLDPLIEVMYAFRVGEVAVSGDIAEMFHRIAVSQEDARAQRFLWCDQPGTAVNT
YVMRAMTFGAACAPCIAITCATRTPxSPRSSNSLEPAARAITKAHYVDDYIDPCERSTASHHISQRSxGGTRQRRLPHAN
WASNHREVLADLxTDLQDRKIRSSTITKKSGASEKVLGMYWGPSQDAFKYALRFARLNRNVLKENAVPTKREVLQVLMSV
FDPLGFLSCLTMGLKILLQKIWRTKMGWDDELPPELYVQWNLWLSYLPLISQVAIPRRYFENGTPEDCSTQLHIFVDAGE
EAYAAVAYFRIQFQGTITVRLVSAKSKVAPVRPLSIPRMELQAALTGARLFRDIKAQHDIKFTETHLWTDSKTVLAWLNG
DPRKYQQFVMLRVAEISELSDVNHWRWVPSKHNVADVATKRQSGPEAYDRWFAGPEFLRLPAETWPITESSHSTTEELRP
RLLHIRQATIRPNYEAFSKWITLSRAVAYWFLYKEQLTSQSRKQSKPTRISVFHIRNAQAYIFRCVQIEGFPDEFARVLK
STPVARSSVLWRLQLCMNEDNIMQVRNRVGKFKSTSDDLVILPTSHWVTKLIVRHYHEKSYHINHETALNEVRQRFYIPK
LRPLFKQVRRDCQQCKLDRAKPQPPIMAPLPPARLGGFQRPFTFVGIDYFGPLTVIDGRKSLKRWGMISTCLTMRAIHIE
IVNSLSTDSCLMGLRNFIARRGLPHEIYSDNGTNFRGADSFLQEVQFIDESKMHHHLAQLGIEWKFNPPAAPHMGGAWER
MVRSIKTVLYKISPHQKFSDESLRTAMLEIELTVNSRPLTFVSLDHDDQEALTPNHFLLGSSNGTKPFCDPERINYRWCL
RQSEQFANQFWTRWVTEILPTITRRSKWHEKVKPIDVGDLVIIVDETQRRNTWLKGRVIEVTRASDGQVRRAKVQTRDGF
LVRPAVKLAVLDVGPIESKLQESSLTGG
>BEL-14_DTa#LTR/Pao 1374-6519 via tfasty with BEL-9_DEl, 2 frameshifts. [Drosophila takahashii]
KKKKPKSESNNKDIEGLKNQRDGYMKSIERTQRYLNEGRFSLNTVELECRLEILNTHIENASLIQNKIEAKDGDDEYREE
LEETAIIAKSLLISLIAETKLKSVDNSAPPATRTPQCRLPSVALPTFSGKHSEFKNFISLFETFVDKDDTLHDIEKFNHL
ISCLAGDALGTVRAFQVTANNYPKALASLRRVYDNDCLIFLDNISTLFNLPKISQPSATALRNLIDTVTALYDSLLSIGD
DKRITNAILIHLVMGKVDAGTKRKWEEQLDYTSLPLWSECESALNKRYQHMVAEEACKPKIVQQSQAYPKKNGNRSFSFV
AAIDDPEVCVFCNSAEHQVGNCTAFAALTVQQRFDFAKKAPLCINCLRKGHTVKRCKSKRCRVCKSSHHTLLHIYSPSNL
ALPAPPQPTLLQNTPSTSHVMHATASDKVILATAIVSVQTKSGELVLARALLDSGSQVNFVTDELAQRLQIKREDVCLSL
RGIGGTNAQATKKIHTIVKSRVGSSQLSSEFYILKNISGYHPDQTVNTSGWRVPENIQLADPFFFKPQKIDMLIGADSFF
ELLSVGQIKQGPEFPILQKTVLGWIVSGRCASEKIRNTEKLVHLSCQEEVLESIDTTLQKFWSVEDLPPKAKVHTPEQQL
CEQHFEKNTQRLSSGRFSVRLPFKSDPNTLGSSYEVAKRRFLSLERRLSKDPSLKKMYLEFMEEYEAMGHMSSTNNKIPD
SPHYFIPHQCVLRPQSTSTKLRVVFDASSRTSTQVALNDILMVGPTIQEELYSTLLRFRLHKFALAADVKKMYRQVMVDE
ADRNFQLIVWRRDPSESLKIFKLNTVTYGLSPAPYLAIRCLMRLGEIAQDSCPKAAKVIQNDFYVDDLLTGARSVEDLLS
LRDEVSQVLQEAGFELAKWFSNCPELSASESAVMPLTADSDVTKTLGVVWLPGKDYFQFRLDDSFLDLRATKRNILSVTA
RLFDPLGLLCPLVTRAKMLLQELWLRKLDWDESLPMQLQTSWEAFKGTLLQLPKIKVSRFVHTDAKVPAEIHGFADASMR
AYGACIYVRTSTAEGLKVSLLTAKSKVAPLKTKTLPRLELCAAHLLADLYNRVRPLLNFPITKVFLWTDSEITLHWIKTH
PSSLSVFVSNRVAEIQEWSEKAIWRHVPTKVNPADIVSRGCDVEELTASIWFAGPSFLLDAEKDWPVNRHFEVPADVVSM
ELRKSALALVVIPEPNCVLQKIESFSSHIRLLRVFVWVFRFIQRCKKVSQPFEKSITPRELNFAFEKIVEVIQSHEFSDD
IGKIRKNKPVATNIQKLSPFLQEKKLDWCSSTLLRVGGRLLNAPIPYEAKFPLLLSKGSQFVKAYVSYLHVTNCHAGPRA
LVSLLREKIWLVNAQEVCRRTVRSCIRCFRCKPQLLTQIMGNLPSDRLRALRPFNICGVDFCGPFNTTYRIRGKPPYKSY
VALFVCFASKAVHLELVSDLTTDAFLLAFQRFVSRRGIPEKVWCDNATNFVGADRHMREFRARLEEQGGGIATFASRRGC
EFAFIPPRAPHFGGLWEAGVKSAKHLFLRTVGEDILTAEELGTLLTSVEAVLNSRPLGAISTDPNDGEALSPGHLLIGGP
LLAPPSAALPDQVSPTCLRRWRSVSCLRHRFWQRWSREYVSSLQAKNKWHQEVPNVAVGALVVVAEDNLPPQQWMIGRIV
AVHVGADGKVRVADVKTKDTTYRRAVHRLAVLPVAC
>BEL-82_CQ#LTR/Pao 200-5608  [Culex quinquefasciatus]
MHQPRARETEEQKEEKKTFYSPIREQILEHKRKELKRKMEEKVKALVRQRGAVKSKLTRISTALVDVVEGRQNPNLKNIP
FLRQNSKNVDACYREYNTIQNEIVALPLSDDARTEQENRYIEFEHLYNEVSIKLETLLETAVKREQRLSLASANQLVPAN
AAAAVVQPPPLSVPLPSFDGNYENWKSFKCMFTTIMARYQTESPAIKLYHLKDCMKGKAMGFIDEETIKNNDYDAAWASL
EERFEDNRLIIDKHIEALFNLPKIARESAEELRKLLDTCTKNVNALKNLDLPVVGLGEQMLLNVLSAKMDKDTRKTWETR
QKAGQLPAYAATIAFLKERCKILEKIEVNTKSNSEATKPSRAVARSNTLVSTTEQKCAVCKSDHELWKCDQFKNYSAKEK
YSVLRKSGSCYNCLQRGHRLSECSSSSCQKCGKRHHTLLHVGDKKPADPSSKNEEADLCRSKEPQVRTEQATGSSSTRSE
TTATLCAQVERSVNVTLLSTAVVLAYGSGGVSYPCRVLLDSASQTHFVTEQFAKLLALERQPASFLVCGLNGSDTRIRSK
IEVRIKSRVNEFSLALETLIAPKITGELPSYSIDVRKWPLPPGTELADPAFFKRNKIDMLIGADVFWDLIKSEQIEMGPN
LPTLRDTKLGWIVGGSVSSASPAKLRTLCTVTENDRLSDILKQFWTIEGSDELLAPGPGDTASNAECLEHFRRTHQRDGE
GRYIVRLPFNERKNQLGDSKQMAMKRFLTVERRLDREPELKQQYAAFMQEYENLGHMREVRTEDADNGGPAYYLPHHCVI
KPTSTTTKLRVVFDGSARTTSGVSLNDALMTGPTVQNDLMAILLNFRCYRFALTLDIPKMYRQVRINPDDARFQRVFWRD
DKNQPLKIFDLLTVTYGLASSPFQATMTLNQLADDHGAEFPRAAAVLQSSCYIDDVLTGAQSLDDALQLQREIVGLLRCG
GFAAHKWCSNAPSILEAIPEAQQGAKLNVAELDLNALVKTLGVAWQPASDTFSFDVVDFESASNERLTRRKVASQVAKIF
DPLGFIGPVLTAAKLILRGVGSLKTDWDELVPPNMGRQWQSFRRELPVLKKLRLPRWILYKEMQFVELHGYCDASDQAYG
ACIYTRLTRLDGSTVMKLVCSKSRLLPKATKKKKEISTPRGELLAALLLARLVTKVLSSTSTTFASVNLWSDSQIVLSWI
RKPPQHLQLFVANRVAEIQRLTGAFRWGYICTDSNPADLISRGTTPNKLLKSPIWWDGPPAVPTTTDAGPMIPDERLPEL
KSAVALALTAVERLKAFDDVSDFFKLRRAMAYVARFAEFIISKRKKVTKGWLTGKEIKRAEGIIVKLVQAEAFHTEIAAL
LDDKRARHRLCGLNPFLDVDGLLRVGGRIKHAFIPYDSRHQMVLPAKHPVTELLIRHLHEENLHLGQRRLLAVVRQRFWP
LNVKTTIRKVVRSCITCFRVNPTKTSQLMGDLPSYRVQPAPTFARTGIDFAGPFWIKSNAAVRKPTITKGYVCLFVCLCT
RAIHLELVSNLSSDAFLAALRRMASRRGVPSTILSDNGTNLVGGNNELEELARLFQNELHQKNLDSFCSSKNIEWRFIPP
RSPHFGGIWEAGVKSMKYHLKRIVGERRLTFEELYTTLTQIEAVLNSRPLTQSSDDPNDFTAITPAHFLIGRELQAIPEP
SYLALKESTLSRWQLVQTLQQHFWKRWTKEYLPELQNRQKWYKKTTIKPGALVLIIDRNTPPMQWPLARIVALHPGKDNV
TRVVTLRTPKGELKRAVHEICLLPLDQEVQPEERPEEQLAKN
>BEL-66_CQ#LTR/Pao 227-6789 via tfasty with BEL-23_CQ, 2 insertions (1818-1976, a dplication of pos 6264-6106 of this element, and 4343-5374, iunknown origin, removed). [Culex quinquefasciatus]
MAAEKKAAILSLQRTMKALHTRAGKLLIYVQSFDVDKEDSLQLETRRDAVFEMRQTFLEIEQKLFGLSKEEELDGISMQS
EEFFDLVTEILYQIARKLKPLSNPPEAKPSLDSRIATVPSSAPTIRLPEISLPKFNGHYDQWIYFRNQFNHLVRRNEALN
DHQRLHYLRSCLVGEAENFESSEESFSSLWKALEQEFENRRWPVDNHLAELFQIKRLEFESANDLHQLLNVVQRNLRGLS
SLKLNLEPLSEAMLVHVVASRLDGDTHKAFESHVVGQSSVKWSEMVDFLLNRCRILENLEQERKQTRVHPKPVGARLQPK
VLVSATRDEEKRNFGCFNCTGSHYINECRSFLALPVKQRFQRVKDLKLCINCFSNRHIVANCKSGTCKSCGQRHNTLLHF
DPKMPGEGTSSQSSASSVRPRAIQNKPEQDRDRVGLCALTSPDAAREQPAPGPEARLVDPALDSKKTSGPVASEDRSVEP
KSPSKKVQLISTSGQALLHTAIVYVQGSNGEVQECRAVLDSCAMTSFMTTALKTFPASVSIVGFGGAGHGITEAAVAHVF
SKPSVIEHQEVVVEFLVAPCIVNRLPLRSFDISSWIIPEWIDLADPHFNQPEKIDILFGIVEWDKMMLSQTHKLGDELPT
LRRTIFGWVAGGPVNEEVNYPTLQALPVTNEQLDEQLTKFWEVESYSTERFLSPEEQAAEDHFVTTHCRDEKGRYVVALP
FKEEEVKLGDSAHIAHRRFLMLEAKLIKDRKLYDDYRKFMQEYIDLGHMERVGTFSLAEPQELPYYFLPHHAVVRPESST
TKLRVVFDASAKSSNGQSLNDQLLVGPTLQPRLIDNLLSFRTYKVAVTSDVAKMFRQIDVRKEDRRFQQILWRTSPDEDI
GVYQLTTVTYGTACAPFLATRALLQTCTDEAEHFPLAAVFGKNSVYMDDVLFGAETVEEALEMQRQLTGMLGKAGFELQK
WCSNRSELLAGIPEDKLEQKVLFTEEGKTKTLGITWQPDLDVFSFDIHSIAFSEGPPTKRKVLSDISKFFDPCGLAAPVV
MTAKIYMQDLWRGKKKWDVALKEDLAKLWIEYRDELSEMKTIRISRCVLPLRRTVFVELIGFSDASQKGYGANLYVRSVN
HEGQTAIRLLCAKSHVAPLKEKRALIPRLEICGCVKLAQLVDKVKRSLPIEFDRITCYTDSMIALSWINTCPSKLEPFIA
NRVARILRLTSKIDWFHCRTEDNPADLLSRGIMPGKLATCGKWWKGPPFMIDHKRPTSVQLIPEDQLPGLLVVCAVETVE
RFSLFDNCEKYFTMVRAVARIQRWHQNACKRSPENRRHGxLIPKFVFPCYFPCSGLALVRLAQEEAFPEVFAQLRKKVTL
QNHSLIPLSPFTDDRDVLRVGGRLSKSSCSYDTKHQMILPQKHPLTVAIIRDKHTQNMHAGIELTLAASRREFWIIRGRV
AVKDVIGKCVVCFEDNPRPVRQYMGDLPACRLERRYPFHQVGIDLCGPVFIKQRNKRSTVQHKAWIVLFVCLSTKAIHLE
LVSELSTAAFLAAFDRFVSRRGxPAVVWTDNGTNFVGAANLLAEWDKFFASVDTQDEIQRAHSNEITWRFNPPEAPHFGG
IWESNIKQAKKLLVKHTAGAALCFEEMSTVLARIEAILNSRPITPLSNDPEDFEPLTPGHFLVFRPLNAVARPEVDRTKH
ARSRYEHITKIVQHFWDRWHFEYLTxLQQRYKWHHKIVVEVGQLVLIKRDNMPVQKWLLGRVVELFPGVDGVTRVVKVKT
KDGILKRAVAKLCFLPID
>BEL-219_AA#LTR/Pao 35-6340 via tfasty with BEL-631_AA, 3 frameshifts and 1 stopcodon. [Aedes aegypti]
MINRTPIKTRSAAAARVTQSTELDGATNTPIRCKACAEPNTTRAIRCFECEDEYHVECVEVTERGVQDWRCSACLGKQGD
KLKKTTSVPISEPFVSSTNPSSQTMQTTVTSLDTYSNPVQNMSAPSTLLISPGSLFPPLPPHSLLPPHSVIPPNSFAPPC
YSIPSYQPAQYQYAMPIPPSRQSNMHVSFASGKNYEQCNTVQSSFGQLIPSVFNAVPSTSYNSMGIITSLPEGRPEETPA
SAFTKYPHQGLEDNHSQYSGTSSQRSTKQRQLKLKLQILEEQRQLQEKEEATKREYLRKRHELMTEIANEEESVIDMEQE
LPEARVSNWLQGKDPGPVTGAQNHQHFLVRPEQSSTIRENTNQQFRTSVEGLPRTHRQGETRLNRSAPRSSIQQVTSAFG
QMQMGNNDQQSAVNQGPHSSIGMAPPQISTSISTPRLMDFDGEDEVFLSRSHIAARQAVSRDLPTFNGTPEEWPLFYSTF
TTTTRMCGYTQEENLIRLQKCLKGKAHEAVKCRLMHPSNVPGIMSTLKMLYGNPEVIVQNLIAKIQSTPQPKAEKLDTII
EFSLAIQNLCATIEACKLDEYSYNIALLNEFVNKLPCGFKVEWAKHRRNLPRANIREFAYWLNELAETVCPIASLQSSGV
KNAQGNKNSAYLHAHSEDTFEDSTENPSKSFKYTRSDQTLECVACKSSCPTLEKCQRFVELGYNSKWDVVKEFGLCRKCL
RKHKGPCRSQQVCGKNGCTYKHHQLLHNYQRDQTNATNSKEEDSKAVVQNSSGECNMHRQHKSTVLFRVLPITLHAQNKS
IKTYAFLDDGSSLTLIDASLAQELNLTGRSEPLCLKWTGNNSRREDDSKNINVEISGTGKASKTYTAVAHTVASLNLFRQ
TIDAQKLKAQYSHLQGIPLESYRNIQPKILIGSDNANLIFQLKGREGKFQEPIATKTRLGWSVYGGTTGVDALVGHHSVQ
ICPCNTQSDEILQQAICEYFSFDALGIYKPEKVLESHENQRAREILQAVTQTTSGRYEVSLLWKFDSIHLPNSKTTALQR
FRCLEARMKKQPELAAVLRDKIEDYKRKGYIRKLTNEEIHARHERVWYLPLFPVFNPNKPGKVRVVWDAAAKTNGVSLNS
LLLKGPDLLTPLDYVLYRFREFRVGLSGDVREMYLQMLMAEKDQHCLRVLWNDDSAGDPNTYVTQVMPFGTNCSPTCAQY
VKNLNAKKYEEQYPEAANAIIKQHYVDDMLVSVETEEEAIKLAKEVKFVHSQAGFDMRNWISNSSAVVEAMMEDTPQDKN
LNIGAELGTEKVLGMWWCTSTDTFTYRLSSKHDPALLEGLRKPTKREILRTLMAVFDPLGLISNVLIYLKVLFQEVWRSG
IGWDDVIPEHLHEKWEQWLEILPAVQNIRIPRCYRLTTQLSAQTNIQLHTFVDASLSGYAAVVYLRFEQGNTVECAIVGA
KTRVAPLKFVSIPRLELQAAVIGVRLADTITRALSIKVHQRCFWSDSRDVLCWIRSDHRRYSQFVAFRVSEILESTTMAQ
WGHKGSKENVADEATKWQGLPDLSSNSRWFRGPSFLWETSNTWPSNPFETDTTSEELRAQICYHHEHVEGLIKPQDFSSW
TRMQRIVATVIRSIHNLRCKANKAQRRIGPLSAYELQQGAIHLYRLAQADAFGDEISMLSSGTDRVTLPKASAIYSFNPF
IDANKLLRMQGRISACEYASMDCKNPIILPKDHHVTWLVVQHYHERYHHQNHTTVINELRQSFKIPKIRRLFQRVRTTCQ
KCKIHAASPRPPIMGDLPPDRLAAFARPFSFVGIDYFGPMTVAVGRRTEKRWGVLITCLTMRAVHIEVAHSLNAASCVMA
LRNFMARRGVPIRIHSDRGTNFTAAKKELSGSERxPESALKEMDQDKVVAEIVSSDTEWTFLPPASPHMGGAWERLIQTV
KRNLRAMQPGRNPSDEVLRNTLAEVENVVNSHPLTYVPVEDSEAPVLTPNHFLLGSSSGLKPLTVFDDRAVVLRRAVRMS
QIEANVFWQRWLRDYLPDITRRTKWFYEVKPIEVDDIVVVVDPELPRNCWPKGRVISVNTSKDGQVRSAAVQTKTGIYER
PATKLAVLDVRREESVSQEPGLP
>BEL-228_AA#LTR/Pao 1396-6736 via tfasty with BEL-67_CQ, 3 frameshifts. [Aedes aegypti]
MRGNSNKQGEENMPSYPEVFDPERHSTQNPCAIAMLNQLAQYRQSQYREQSFSSRQDHWTNGRTYSIRAMSSGVANPTST
PAVEICSQRTSVDRAMFATQRGEEDLTRPHVPISSVVGDPYRPSCSRREPCRVEEDFDDPCPLSKKQLAARQAISKDLPS
FSGNPEDWPIFFSSYTNTTAMCGFTDAENTVRLQKSLTGKAYDAVKSRLMHPSNVKGVIDTLRMRFGQPEAIVHSLIAKI
TALPSLKEDKLETIMDFAVEVQNFCANIVDACELEEHMYNVSLLHQLVSRLPPSIKLDWAKYRYTLPRVNLATFGNWIYS
LAEAASTVTIPAIQEFKPSRNDSRPTKKSAGFLNAHLESNETELKPDIDNVRNDTNGCLVCKSSCKELWKCKQFLELSRD
SRWAVVRDFDLCRRCLQKHNGVCKARACGKNGCTRKHHELLHNENQKENESNPKSDGCERHQPSTSSARHECNSHRSSTN
NSLFRYLPVVLYGKSGCIQTFAFLDEGSKLTLMDEELANELELDGVESPLYLRWTGGTERCEKDSRAISVSIAGVYTGAK
RFKLDDVRTVQGLQLPRQSLDAVKMMERYPYLRGLPIEPYEAARPRILIGLKHAHVSLVLQCREGKVEQPIAIKTRLGWT
VCGGSDNENVPNMVHYSFHVGSREDHLDEDLHQAMKEYFALDSMGVMKPSHALLSLEDQRSNKMLESLTNLNGNRYETGL
LWRYDDFRLPDSRPMALRRYHLLEKRMAKNPELGKALDQKIEDHIAKGYIRQLTKEEEEQPVSRVRYLPVFPVFNPNKPG
KIRIVWDAAATIFGVSLNSVLLKGPDQLCSLFSILLQFREHPIGLTGDIREMFHQIQIREQDRSCQRFFWRDKFGKAAVF
EMDVMTFGACCSPSSAQFVKNLNAGRFVGKYPQAVEAIIKRHYVDDMLVSVKTEKEAVDLAHQVKYIHAQGGFEIRNWIS
NSQLVLQSLGEDDVKSKNLDLSAEVIAEKVLGLWWCTDKDTFTYKVGWTRHDEMLLQGQRCPTKREVLRVLMSIFDPLGL
IAHFLIYLKMLLQEIWRSGTQWDEEISDTLFAKWQQWLRVLPEVEGVEIPRCYHIRKFTDCELHTFVDASENGFAAVSYM
RFSNGKEVECALVTAKTRVAPLKFQSIPRLELQAAVLGARLARTVAEALSIKATRRLFWTDSRDVLCWINSDHRRFTQFV
AHRVSELLDSTEASEWRWVSTKENVADDATKWQGRPNLTTSSRWFKGPEFLWRSESCWPQQIEISKTTQEELRPHLVAHI
TTMAPAICLTNYSSWKRLVNVVGFLLRFSANCRRKLQHHPIHTGPLCMEELSAAEKILIRQAQRDNFAGEIASLTRGQQI
SRSSSLFKSTPFIDDSGILRMRGRTTAVLITEEAKNPIILPRDHHLTTLIISHYHNKYHHLNQDTVVNELRQKFSIPRVR
VSCAKVRRNCQRCKNDHAMPSAPIMADLPDARLAAYSRPFTHVGIDYFGPMEVAVGRRVEKRWGVLATCMTTRAVHIEIA
HSLSTDSCVMAIRNMIARRGIPRYIYCDRGTNFVGTSRELSRVEGELDLETMMKEFTTSETAWCFNPPMSPHMGGCWERL
IRSVKNSLKSLNLPRRPSDEVLRNALTEIENAINSRPLTHVPIEDNAAPALTPNHVLLGTSNGSKPLTMLSDSGTIVRQC
WRTSQIIANQFWRRWIAEYLPEITRRTKWYSSRSPSVKIGDVVVIVDSTFPRNCWPKGRVIATRPGRDGEVRSATVRTAT
GVYERPVVKLAVLDVMREXK
>BEL-220_AA#LTR/Pao 1393-6626 via tfasty with BEL-627_AA, 3 frameshifts. [Aedes aegypti]
MVLPGGASATKAPTMRALTARLKEIQLSFNDIYRFTQKFSEANSITEVEIRMGKLDELWESYSATMVEIFAHEDYNPEKM
SLEKERVEFSDQYYGVKTFLLDKVKELQKPSVLEQSSRAGDGPASNTSDHVRLPQIQLQTFNGDIDDWLSFRDLFTSLIH
WKVDLPEVEKFHYLKGCLQGEPKALIDPLPITKANYQVAWDSLLKRYNNSKQLRKRQVQAIFKLPTLSKESGADLHILLE
GFERIVQTLDQVVQQNEYKDLLFVNILTARLDPVTRRGWEEVSSTKEQDTLEDLFEFLRRRIQVLDCLPPKPTDTRGAGQ
FQQQPKPRTQPMKASYSSTQSIQASRGRCVACSSDHLLYQCSEFQRMTVSDRDSLLKSHGLCRNCFRVGHQAKDCHSKYF
CRNCKARHHTLVCFKQEREKETKVATVAGGNKSCNSKDHQESSNIQVANVAATETAVSAAAHQHPTQVLLATAVVMIEDD
VGNRHPARAMLDSGSESNFITERLSQRLQVHRDRVDISVAGIGQVATKVRQRLRAVLRSRVSDFSRELGFLVLPKVTVNL
PTTTIKTDTWTLPSGIQLADPTFFESSAVDLVLGIEFFFEFFETGNRISLGEQLPALTESVFGWIISGGNAFPARSLHIS
CNASTLDSLDTLMTRFWSCEEVESGKAYSPEEARCEKWFSSTVQRDSGGRYTVALPRMEDAVSRLGESKDIAFRRFQGTE
RRLARDPSLRQQYVAFMAEYLELGHMRIVSETDDTSTKRCYLPHHPVVKESSTTTKVRVVFDASCKTATGVSLNDVLLVG
PVVQEDLRSIILRSRTKQIMLVSDVEKMFRQINVRPEDRQLQCILWRNSQSEDVRTYELNTVTYGTKPAPFLATRTLHQL
ALDDEDRFPLAARAAIEDTYMDDVITGADDVETATELQLQLNAMLSGGGFLLRKWASNCPSALDGISQENLAIRSMDGIN
LDPDPSVKTLGLTWFPTTDILGFQFSIPPVDTGVILTKRSVLSVIATLFDPLGLLGAVITTAKVFMQQLWTIRDENGQPL
DWDKPLPPTVGEAWWKFHEQLPLLNHPRIERCVIIQKAVGVEIHCFSDASEKAYGACLYIRSTDEDGRVKVRLLSSKSKV
APLKCQTIPRLELCGAVLAAQLFEKVRESIRMTTTCYFWTDSTCVLRWIQAAPTTWTTFVANRIAKIQIITEGCRWSHVP
GKQNPADLISRGVTPEEILENHFWWQGPTWLHESSDRWPRSTEISSVEEVEEEKRRVVAGTVSTITEFNQEYFRKFSSYS
DLVRRTAYWLRLMKLLQLPATQRSNQGFLSTSELREAEKTLVRLVQKETFVEELKALSKGETVPRGSHLRWYNPFISEDH
LLKLGGRLKHDAGPQLMLSVVRLRFWPLGGRSVARNIVNKCQKCFRSKPSPIQQFMGELPASRVTIARPFLNTGVDYFGP
IYLRPVPRRGVVKAYVAIFICLCTKAVHLELVSDLSTDRFLQALRRFVARRGRCAKMYSDNGTNFVGARNKLQDLLKLLK
SRDHHDSVSKECARDGIQWHFIPPSAPHFGGLWEAAVRSSKHHLLRVLGETPVSPEDFNTLLTQVEACLNSRPLTPLSDD
PNDLEPLTPAHFLIGSSLQSIPEPDLGELPINRLDALQLIQRRLQDFWKRWRREYLCQLPRTKRWQPAIQVEVGKLVVIK
DENQPPMKWRMGRITEVHPGSDKIVRVVTLKTATGFLTRPVEKLCILPLPEDDSAQQITTADPSQ
>BEL-49_CQ#LTR/Pao 673-3420 (N-terminal half) [Culex quinquefasciatus]
MTTKADKKLADLLQKRERLVATREVVEKFVAAYDHEKHAIQIPVRLETLNRTYKEFLSVQSEIEQLDKPEAFKAHLAVRC
EFEDTFCEAKGFLLSKADHHTAHADTSLNSSFTHSQGPSTFHHRLPKIDLPKFNGDESRWISFRDNFVSMIHINEDIPVV
NKLQYLLQSLEDPARKQFETVEIQADKYAPTWEELLKKYDNKRSLRKTLFRRLYELPSMEGESAQHLNTLVDDFQRHVKA
LEKLGEPINQWDTPLVFILSDKLDYATLRAWEQDSSKKEVVTYEELIEFLNNHVRMLKSFASDLQHRQTGNVKVAGASQK
KSQSIKFIANAATSEIRTYTPQCPSCSKQHLLYECPAFTKLAVIQRRELVTQRSLCWNCFRQNHQARACRSKFSCRICQA
KHHTLLHDPGAPDHTQDAAVASNSTAPQHNPPTTIGTFGLANSSETSLPIVAKQDTVLLETVNLLITDHHGRELLVRALL
DSASMSNFVSNNLADLLNIRRKNVDVTVAGLGESAKKIDQQITTTVKSLTSQFSTTLDFLIMKPPMVNLPRSAVDIAHWN
MPDVRLADPHFHRPGAIDILIGGEFYHELHTGQRKPIGDGLPLLVETHFGWTVTGKIPTKSDGASTLCCFSTTARTLLVA
PQPILELETAKPNASHPTKQSSSTPTQTHNGRYVALLPRSKNPQVTHGNSRESATHRVSTHASRRKKVPSTKPAKKARLS
HMRKDNNTKPHCCFGYPLASSFMQADLRSCFGQTSPAVNGSGNEMIERQTEMQLTDKSPMRTCRAVPSKSLTFFNQPHLR
KLAEAESCPAPRQKKFYKQHVYKGEVSTAGEGLQKAEFAESSKIGRAVRNMLNAKLECEQVSTVPFAPSPPVRSTGSFAV
PDDARESSQPPPRAAETPKTGRALRNCSMRIRNANW
>BEL-17_DTa#LTR/Pao 1032-5998 via tfasty with BEL-7_DWil, 3 frameshifts and 3 stopcodons. [Drosophila takahashii]
MVPRGDDNSTCGSCKKDATGKDIIWVQCNNCKTWYHFSCVREESDHNIKGWACPPCEKIDTTQQGAAAQGLENAPLPLEK
DKLDSTQTNRKPLPNALQQINVAEVELPKMSLARNTRYKYINxHSYVTDARGETRSxAEIYxTKIQYFVAPTDSNMAWTP
TTMGPSSAQLSARQILPADLPTFNGNADEWPTFISAFENSTSAAGFSNVENMLRLQKCLKGKAYDLVRDKLLLPSMVPEV
ISTLKTFFGRPDQILDRLIEKAKRISVNKDRQALSDWLYKIAEAASTVVSTSYSRTNNVHTHTSYNDVQPQHAQSEEQSH
VAHRSELTCRMRTARRSAIPRRKATVVRDRLCFKCLKVHGRRCFSTSECGVGGCESRHHPLLHKGSQNINVVTSHQVKSA
EADQYFRIVPIRIQGDNIKVDTYAFLDEGSSVTLIDESFFKRLNIRGTPDPICMQWTNQTTRKESNSVRFNIRVAGAGAT
KTYWLNNVHTVKNLGLPKQTVNVQELRIKFPHLDGIPLQSYWNAEPMILIGNNNWKLAVPRKVKEGKWNDPIASKCILGW
GLQGSTSPKTAFSMHHCQCNWDKIEKSVKESFCVESVTPKTFRSVDDEKALEILDKTCSKSEGHYQVGLLWRNNNPILPE
SYNNAVKRLNCLKAKINREPELFDKIEVQINNLLKKGYANELSSAELVEQPERVWYLPIFITHNPNKPAPDLLHPLTEVL
MAFRVGKIAVCGDIAEMFHQIRILEADAHAQRFVWYNKETQAIRTFVMRSMTFGISCAPCIAHYVRDKNAEEYKLQSPRA
FEAITKAHYVDDYIDSLANETEAIEVTQKVRDIHAAGGFHIRNWASNSPEVLKHLQGDSLVLQPPKELGDPEKVLGMFWE
PTTDVFKYVFRFARMKRDVLSEEALPTKREVLQVLMSIFDPLGFLSCYTIGLKMLLQEIWRTGIGWDDILPGPQLAFWTK
WKDLLPQATTIQVPRRYSPLLHMADFIELHTFVDASEYGYAAVCYFRIGKGNDITVSLVAAKSKVAPLKPLSIPRMELLA
AVIGARLSYKARSTRNISVDQHTYWTDSRTVLSWLTMDPRHFHAFVMHRVGEILETTSASQWHWVPTKLNVADMATKFIN
KPNSQEWINGPSFLQHSKDQWPEQPTLCPSYEVNTDEIRKTVLVIRKQSIGAIPLNVERFSDWKRLYRATATFLLYLAIL
RSRCTAGKIQKVLTLEQLTSAKNLLYKTAQQDAFKSELETLQSDGFINRPSALIGLNIYIDSDGIMRTQGRSDTINQSRD
QIVLPKRHHITHLIIKEFHETNHHMLHEGSINLIRTVYFIPQLRVVYKSVRKACQRCKNNSAIPVSPQMAPLPPARIASF
ERPFTYTGVDFFGPILVNVGRHKEKRWGVIFTCLTLRAVHIEIAHSLDTSSCVMCLANFMSRRGTPKEIFSDNGTNFKAT
EKIVKEELKNVEFDKLAVKYDKIKWRFNPPAAPHMGGAWERLIRSIKMVLKSISPNANYNDESLKNALISAEYVINSRPL
TFVSLEAEDDDALTPNHLLLGSADGFKPPVTKESNPRQRWCQANELADLFWRRWVKEYMPIITRRSKWFPKRRPLAIDDV
VIVVDENLPRNLWPKGRITDVVTAKDGQVRSATIKTQHGIMVRPTTKIAVLDVALK
>BEL-16_Adi#LTR/Pao 165-6555 via tfasty with BEL29_DR, 1 frameshift. [Acropora digitifera]
MAESSHQELADNCNVPGESDVLEFEEKNGESESVEKTSSDLKDATQPWDSLGPRQRNPSEKGLEERINWLKQQRINALRA
VSRKRTEVSDLMVNSNNLHLVKNELANLNDLIEHYKETFHAYYKELTDDETKEREYAHYDEKIKGIMAYLHPVYAWISQA
ESHLTDQLERASSKGSRRSSKTSSRLSARERERVRLAELKAERSMLKQKQALRAAEEDLELELEIVKAEARGKALEELDR
EHNPPLPGGSSPPSAVASFSPIVIPSVAASLPNEVTSKPEVFVPTTQTPATTETQAKSALQGPRISAATDSIAKTSTSNP
KVAEFIPTTFADGTSSTPYTGHGSKNSKEIARGISEIQSPQLVERTFQSVIELQQRQNETIIATHQQLTAAMTLPQPTIT
KFKGDPIEYNTFIMAFDARIHSKATSNADLLYYLNQHLEGEPADLIQGCLHMSPGEGYLEARHLLQKEYGDPYKISTAYL
NKILQWSPIRFDDNQGLKRLSIFLTKCTIAMKSISYMRVLDHAPNMQAVVSKLPANLQAKWRDQVFKKKKRVNGATCFAD
LAEFVESASESANDPVFGREALNKRKEDAKPLKVKEPLNKGRELPSRAKMPPRKPENPWKYKESSFATNPSGTVKPPVSD
GAGPTNNRGSPSCHLCSRAHDLDDCELFNRKTPELKRAFLREKNMCFGCYGTNHLSRNCSNKRKCKHCGRLHPSALHIDG
FQLPQKDNTSPAKQENDKAVNNACTNPQNASCHAAKLNESVILHAILPVRVKWKGNTETITTYAFYDNGSGGCFLTENLK
EQLGVKGERTELQLGTMHGQSLVTTTVVDSLVVTDMENRNPVELPRSYTRMEIPVAEQQIPTPELVKQWEHLRSVAEKMH
KFIPNIEIGLLIGSNCPEALEPLEVVPRGDEGPYAMRLRHGWTLTGPLHVRNTPCPSNVTCHRITVREAESVKEMISPQA
IQQMFQLDFNDRKFGPDEYSYSREDKKFITGIEQSIQHHNGHYVIPLPFRNSQTTMPNNRDQALKRAMWQRKKMLRDENY
RNDYVSFVNEMISRGHARKVPEDRLEVEPGKAWYLPHHGIYHPKKPHKIRVVFDCSAKYEGASLNAQLMQGPDLTNSLVG
VLTRFRQDRVAFIADIEAMFFQVRVPDEQCDFLRFLWWPDGNLESAIQEYQMTVHLFGAASSPSCCNFALKQTANDTEPQ
SGSLVAETIRRNFYVDDCLRSVKDEQVAIELIQGLSEACAHGGFNLTKFISNSRAVLESVPPEKRSKEARDLDLGSDRLP
VERALGVQWCVESDTFEFRIVLNDKPPTRRGILSVVSSIYDPLGFAAPFTLPAKRILQDLCREEMGWDDTVPEQYQVRWD
KWLSELPLLEQFKVNRCVKPAEFGTVVSQQIHLFSDASSVGYGSVAYLRLRDNSDRICCSLLMGKARLAPIKSVTIPRLE
LTAATVSIRLGELLKREVDGNPEFVYHTDSTTVLSYIANEQQRFHVFVANRVQLIRDCSRLNQWKYIDTKENPADDASRG
LNGLALIEGKRWLHGPAFLWKPESEWPRQPRMVNQVLADDPEVKGTTVASSNVVIVNQSASAASKLLYHFSDWHRLRTVS
SWFLRVKKVLQIRCKERMNVKEEVSRDDKNLADRRKPSITKTAKHKETEEPCSPLTVQDLVNAEFAILKFVQDLAFGKEI
YALQELENENSLDKEKLQKRKKASMKNNSPIQRLDPFLENGILRVGGRLRRADLPHETKHPVILPSKSHVTTLLIRHAHK
RLGHAGRGHVISSLREKYWIIKVNTAVRRVISKCVFCRRNYSSPGVQKMADLPKNRISPAPPFTYTGVDYFGPFNIKEGR
KEMKRYGALFTCLVSRAVHIEVASSLESSSFIQALRRFIARRGPVREIRSDNGTNFVGARNELLQAIEEMDHEEIHAKLK
KKNIDWIFNPPAASHMGGVWERQIKTTRKVLAGLMEEYGHCLDEESFRTLMCEVEAIINSRPLTTVSGEPNDLEPLTPNH
ILTTKSTVILPPPGKFQSCDVYMRRRWRRVQYLANLFWSRWKKEYLVVMQERCKWQHPQRNLVEGDVVIIREENVPRNAW
SLALVVRVEPDSQGFVRSAVVKTRETTLRRPVNKQFLILPKEEQEGDQEK
>BEL-19_DAn#LTR/Pao 26-5645 via tfasty with NINJA, 3 frameshifts and 3 stopcodons. [Drosophila ananassae]
MMPTKHSPRRSPRLEASGVPATATTTATATCTPASSASVAGDRQRPLTPKESGTAARKAASNLQPEARGQIADPTTVQVA
ALMERIARLESELEKARASGGQAEAARNPVGIGASGVGVSGAANTPPCLSGMMQTELGVTSSLQLPAQLSASLPPQWSGN
LAPTLGGHYANGQPVTRTYTPTTTVGYSLPFCVTATAQPGLGYVHPPREPTHNLEVSAPLNLPYEVATASIPGWTPRRLP
DLPDFDGQPEEWPIFLCAFTETTAAYRCTQLENNQRLVKALKGDARETVKSLLIHPSNVEAVMEQLQFRYGRPGLLIRSQ
LDSVRDVQPIQEANIARIVPFATKVSNLAAFLQSTPIGSQHLGNPTLLEELIAKLPLSKRLDWARHAATIQPYPTVVHLS
EWLHEFARLVCTVTDVGAKEQPKRRILHANSVHEEERYADRPRCCPICEGQHQIRDCKEFNGVSTTTRIESARKLRLCFS
CLEPGHMSRFCRKSRGCNVHGCQMRHHYLLHESPGHSRQPYVAEGGRRSDQRSNSKRSGMPRPVDSNERSRPTSAAVIDA
GREQDERRSTSDRHDLMHRNLNCVDSIGCHLLFRILPVTLYGENTQVDTYALLDEGSSVTLIDDELIRSLNLKGESRQLN
LQWFGGKSAKEHTKVVSLQISAAGKPKRHGLKNVYGVANLNLPMQSLRRDDVQAVEANARLPVKPYNNATPRILIGLDHA
HLGIPLKTRSYGSGGPFAAATALGWVVYGPVSGKVSSPLQSSCLLAVPQDNLLEKMVSDYFEIENFGVKPAQPVAAGGVE
LAPSVADADGDARALRILEESTKREGRRYETGLLWRDDEVILPESYNMALKRLVNIERKMRRDVDFARAYKGLMDDYVKK
GYARRLEPQEVQRYQEGKLWYLPHFGVENPNKPGKIRLVFDAAAKVNGVSLNSALLKGPQRYKPLPAVLFHFREGAVGVC
ADIKEMFHQVLMQPQDRGSQRFLWRNGDDQREPDTYEMQVMTFGAACSPCSADYVKTLNASQYSSTDPRAALAIKEYHYV
DDYVDSFTSEEDAIAVSTRVREIHADAGFDLCRFTSSSASVVRALNPLESIASVKWTEAEEKVLEMYWQPATDDFKFGIK
YHRVPRIVMTGERVPTKREFLSLVMSTFDPIGFLSCYMVTAKLLMREIWRKGVNWDEPLPADLAAAFEDWRQGMRKIEEF
RCPRYYFGGGRVRMLQLHIFVDSSQSAFAAAAYENGDENGDVQAHFISSKTKCAPMRTMSIPRLELQAAVLGTRLMDTVK
QEHGVAISSCVLWTDSKTVLHWISSTHRRYKQFVGNRVAEILESTEASQWRWIPSGENVADDATRPRKAVDLSIGSRWLS
GPPFLRGPEESWPRSSEGWIPPTPDEEEMKCEFALVMVNFISLQRFSKYNRLLRSTAWVLRFIRRCRGLRYDGEDHGLTS
MECAEAERALVRQSQREAFAENDQGKAAKGSRLHGLSPYFDEDGVMRASGRIDDATCVPYSARRPIILCHDEALAEMIVQ
HHHERMCHQNTEATIGAIRQKFWITNLRRLLRRVVSIMQRLQAAKGTTNSARDGSPTRGPAGGQRMALxVHWFGLFWTAI
CDGWTTHGEEVGGSVYVSNHKSYPLRVAHDLSTDSCIIAMRNFMCRRGPVVRIRSDNGKNFVGADREARRFSEVFEPAQI
QGELSSKGVEWVFNCPANPAEGGAWERMVQCVKKVLAHTMKELAPKEHVLENLLIEAESIVNSRPLTHLPVTVDQEAPLT
PNDLLKGAPDLPDLPKDDGQEVVRALPGSSGAxRGxCGTVSGRDGCMSTCLHLCAGRDGASTSSQFAEETWCSSVILPYH
EGSGNEASWKRCSPEEMEYLVERQCGLTIEPRL
>BEL-30_CQ#LTR/Pao 23-6272  Translation from consensus with (aaccctgcgccggctccg)21  reduced to 2 tandem copies [Culex quinquefasciatus]
MSAPGVHNLTGYECVLCEEHSNADSQMVFCEKCQGFFHLQCAGVTEADRDLSFTCKKCVGPGEKVDQTDDENDGATVVDD
SKKADETLPGKPDPSVLNKPNGRIEQEDAELQHQREMQQLQEAFENQLRREQEKRMMILRLERQMLEQKAALNAEFNKRK
NELYDEFKHTAGEVEPEEGAVGGEIVPVNDHRGAFPKYSTPIKHPDVRTGKTEESSFPRPLGPKPLSTPAPNPFPWPEPS
PPAPASNPVPWPAPPPPAPAPNPAPAPYPDPVPPIPEDIRNNRGDQQDPDFYGDRELTRAQIAARKGPFANLPVFTGRPE
DWPMFISSFNNGNRACNWSNLENLGRLQTSIQGRALERVQTSLLYPESVPRVIETLRLLYGRPEQLLHCLMQKARKAESP
RMDRLSTIINFGVVVQQLCDHLVASGLVDHLVNPMLIAELVEKLPDPTKVEWVRYKRQFAAVNLSTFADFLSERVSEATE
ATAYSEPQEERRPNRERHEKKPRGRENEGFLNTHLGSEQLSNQTKGDASGGRRPCRACNRTDHRLRFCDDFLKLAWDARM
KIAEDWDVCLLCLNEHGQTRCRFKGHCNVGSCKERHHPLLHPPSPTVPLSANCHVHNSEQQPVIFRVVPIKVHHDGRSFE
VVAFLDEGSSFSLMDSSVADQLKLEGTRKPILVKWTAGMSRMERDSRSVDLSISAADSQDRFLLRNVHTVQQLQLPNQKM
QYSAVAARFKHLRGLPIADCDNGPPQILIGLKHIHVYAPLESRIGNPGEPIAVRTQLGWTIYGPQTGDDVVSGYTGHHAA
GNLSDHDLQELLRRHFTLEDSGLAVAVLPVSAEDCRARELLEKTTIRVGDRFQTGLLWRDDNPQLPDSFPMALKRMTELE
RKLAKNPALQKNVDEQISEYQRKGYAHIATAKELSQAVPGKIWYLPLNVVLNAKKPEKVRLVWDAAASVQGKSLNSALLK
GPDLLTSLPTVLSRFRERPIAFGGDIAEMYHQLQIQPCDKSAQRFLYRPTGSNQPVIYVMDVATFGSACSPCSAQYVKNR
NAEEYAEKYPDAVEAIVGSHYVDDYLDSTFTIGEAIKRASEVAFIHSKAGFQLRKWVSNSPEFLQHFGVQGADQLVPLGT
DKNGGMQRVLGMSWNTFDDVFVFVTNLRDDLQPYLTEGKLPTKRILLSIVMSFFDPLGLWALFTIFGKIIIQDLWRNGCP
WDQVLDETSAAKWFKWIALLPRVQAMTVPRCYFLGVKLSDYVNLELHVFTDASEEAYGAVAYFRVWVYGKPKVSLVTGKA
KVAPLQYMSIPRLELQAGTLGARMAAAIKANHTFPIRQTVMHTDSATLLSWIRSDHKKYKQFVAHRIGEILSHTDVDDWQ
FVATKFNIADVLTKWGKHGPPLDGDSEWLGPEELFIPEEDLVLRELPEPNVREELRAFYLFHEIEFASCLIDPSHFSRWK
TMVRTVACVFRFITNLRRKQKKQPIHTLQATFNLERFVLGTESLVKVPLTRDEYQRAENHLWQAAQQEGFPDEKKIMLKN
REQEQQKWHSIERSSPLHRLAPFLDEYGVIRMEGRSAYAEFLPFEQRFPIVLPKGHDITNKLIDLYHRKFGHANRETVVN
ELRQRFYIQNIRAAVLKVMQTCLKCKNNKCQPAAPRMAPLPVQRLTPQLRPFSYVGVDYFGPVVVTIGRRTEKRWICLFT
CLVTRAIHMEVAHSLSSASCMMAIRRFICRRGAPLEIFSDNGTNFQAASKELAQTVKRIELECADIFTDARTRWNFNPPA
APHFGGVWERLVRSAKDAIKALHDGKKLTDEVLLTVLAEAEDMVNSRPLTYMPQESADDEALTPNHFIRGLPAGERDEAN
SPTSSAEALRDNFKRSQQLADMLWQRWLKEYVPTINHRTKWCTEQDSVKEGELVYLVDGNNRRTWVRGIVERVILGADGR
VRQAMVRTSKGVYRRPVAKLAVLECRSKSGQDLGPGPELREGE
>BEL-29_CQ#LTR/Pao 369-5637 via tfasty with BEL-5_CQ, 1 frameshift. BEL-59_CQ is a derivative. [Culex quinquefasciatus]
MGPKIPRTPLKKEGEEEEDLENLVFLREEQTEVIDRLKATIDATLVEERTEAAAKVHRWRLDTCFAEFAAIKERIYRADP
KKRNDHKKVVVEFEALFDQLAMTLGGWNAGAAPAASSALVERHDRPIVIQQPLPRVFPSFDGKYENWEKFKVMFVDVVDK
TNESARMKLYHLEKALVGDAAGFIDAKTIQDGNYAHAWKQLTDHYEDKRRMVDLHIGGLLSVQKLACEGHLELRALVDSV
VGNVENLKYLGQAFTGVSEQIVVYLLGHALDDTTKKIWESTVARGELPKYEDMIKTLKDRISVLERCETSSDSIKKQQPR
TSSKPSTGKQPFQRANAATTPAQPEFQCGVCGEGHLTFRCANLTGLTVAQRREKVRNKNLCFNCLRSGHSWKRCSSKNSC
GKCQQRHHSLLHDEAKAEPVPKSTPQQSAAPPKNPTPVVQPAGQQAPPTTEATCNHTQTTKTVMLLTAVVHLSDTQNRPV
PCRVLLDNGSQVNFISESMAKRINIQRVATTVPICGIGAVKTYAREAVTVELQSRYNSFAVNVECLIVPKVTGLIPSSPV
NIADWPIPECIQLADPDFQTPDRIDLLLGVAMFFRLLKSGHIELGNNLPDLRETYLGWVVAGEVGDTVPGPQYSHTATLE
DISEAIQRFWQVEEIESVTPITTEQEDCETFFRSTHKRDPTGRYEVRLPFRPVVARLDDNRSLALRRFLSLEKRLNRDPD
LRKQYGEFIQEYQSLGHCKTVDETVDSPKLGRYYLPHHAILRPSSSTTKLRVVFDASAKMSPSATSLNDALQIGGNVQND
LFSILLAFRKHPVVFTADISKMYRQIRVASADTSYQRIFWRNDPSDFVQVLELTTVTYGTAAAPFLATRCLVQLCEDEGE
NFPLAASIVRNACYVDDILAGADTPEEAIECLRQLQGLLGRGGFPIHKWSSNTPAVMDQIPESDREKLIDLDGLSGGVVK
ALGLYWCPGDDDFRFTATQSDAEATKRRVLSEIGKFFDLLGLLSPVIIMAKMLMQKVWNEGLTWDVLLNGELGTTWQQFQ
TALPDVREIRIPRYVIGAGSVGLELHGYSDASKLAYGAAIYIRSLLPNEKTEMRLLCSKSKVAPNKQLDIHRLELLGCRL
LSRLVVKVIAALKLPFRAVVLWSDSQVVLAWLKKSLDLLQTFVRNRVAEILQETAGFIWNYVRTKDNPADLISRGMFPAP
LMKCKKWWEGPSYMAPVVYPVEPAREVPDEELPELRKVKMVAMLAFNSYELPIFETCSSFRKLQRVMAYVVRFVNNCKQK
NPADRVHRRHPSIPELRAALNLIVKVVQHDVLSKEIQQVAENDSAGKLQCLVPFLDNGLLRVGGRLQQSELPFGTKHQLI
LPKHRVTDLIIRAYHEEHLHAGPSALLAILRRQFWLLDGRSTVRNVTRSCVTCFHVKPRNSSQLMGMLPSSRVSQAFPFE
EVGVDYAGPVFVKVGLRKPQMVKAYIAVFVCMTTKAVHLELVSDLTTEAFLAALQRFVSRRGVPRQIHSDNGTNFKGAKT
ELHELYLLFKQRAFNDQIETYCQPKEIAWSFIPPGAPNFGGLWEAAVKSTKYHLKRILKNAQLTFEQYATVLAEVEAVLN
SRPLFAMSSDPSDPEILTPGHFLIARPLTAIPEPNYDGIPTNRLSKWQHLQRLREHFWKVWKNEYLTSLQPRGKNLKEKP
NVRPGMVVLLEDKEAAPLQWKLGVVTNTYPGPDGLVRTADVRVGGTTVRRPITKLAILPILDNEPTPAGSAPSPGG
>DIRS-24_NV_yr#LTR/Ngaro 2179-3234 [Nematostella vectensis]
RSVPFQLAGISALGALGSSFPYSHPGVASGRYLSPLETRCWRFISEGLAPSTRKSYATGQRKFVNFCAQLGKLNPLTGSP
CPADEWTLCLFASFLADFVQPSSIKVYLSGVRAMHIEQGFQDPLAGCLRLERVLRGIKRVRGVNPSSRLPITDEVMYTIH
RHLDLGLPDHLMFWAACCLAYFGFLRASEFTVDSLNSFSSQRHLQPQDITLDSMSAPKYIRVNIKASKTDPFRKGTFIYI
GKARPPLCAVEAILAYLHLRGGTPGPLFLLQSGQPLSRPILTSWLRQIMRAAGFAGDYSSHSFRIGAATVAARNGLSDHL
IQSLGRWSSDAYKGYIRTPVESLAAASASLV
>JDV_vif#LTR/Lenti gi|9628095|ref|NP_042685.1| vif protein [Jembrana disease virus]
MERTIQSPMGRRRGSSGRRKRNANIISPPAYAIYPAPQYRYPRWEFVMNDLYSQTARLQKEEIIITYRYAVWAREWKIQT
GFLDLGYLMTPAGTHTTGELNELDLFWVRYTLCQHRSPKWRELLLGEMTHTSCRRTAQAAVVSHTKPHTLQRLAGLTLVC
NQNLCWYPVGTVTRNSPLWMHFTTGKEPTIQQLSGHP
>DIRS-25_NV_pol#LTR/Ngaro 1552-3195 [Nematostella vectensis]
LRLFFLFTALHGLPPVSQVSPLSPEAFARELAYHPQPECVEYVMTGIREGFKLGFEGTTPLKSARDNKLSARKNPQVIDD
YLANEVRLGRVAGPFRCAPLPRLHTSGFGVIPKAGQPGKWRLIVDLSAPAGCSVNDGIDAAAFSLQYVRMDEIIQMVAQF
GPGAQIAKFDVEAAYRNIPVHPSDRYLLGMKWRGDFYVDLTLAFGLRSAPYIFNCVANMVEWILINNHNVRPLVHYLDDF
ILAGPANSQYCAAALSRCRVVCQSLGVPLHPGKCVGPATTITVLGIELDSSSQIARLPADKLSALRGLVSTWRECKWATR
NQLESLIGHLHHAAKVVWPGRTFHRRIIDLLCCFRHRDHPIRLSAEFRLDLAWWHNFLSVWNGVSFWLFPGLQVEANIVV
TSDAAGAIGYGAHYRGAWFNGRWEQNQIARSIAYKELFPVVVAAHVWGHGWLRGHVLFQCDNEAVVALLNSRTSKVPELM
HLLRSLLFAAARFNFFFSSVHIPGRHNQIADALSRFRYQEFRRAAPYAECHPTPIPPQLLRELTPRH
>AGM1#LTR/Pao 188-5300 via tfasty with BEL11_AG_137-5269, 5 frameshifts. [Anopheles genus]
MATAREDKIRGKEQKRKNIIDSMRRIDLFVQTYTVDKIHEVTTRLERLEKVWYGFEEVQEELDKLTLEGDNAENEKTRAE
MEELYMSVQIQSLRLKPSSNPIVSDVKPVPIVSQMKLPVIQLPEFGGDFNDWLPFHDTFVSLIDKSDELSGVQKLHYLKA
ALKGEAARLMQPILTTDENYKMAWQMLVDRYGNKHLLKKRHIQAILRLPKIINSNLDLLRRTVDDFQRHTLVLEQLGEPI
KHLSSFLVELLSEKLDSASLAAREEAQADKSYTYSDMVEFLRKRVRLLETLANDTGETSKRQPRVKVSVNTAAAAEKKVD
MCVVCGKQGHTIVNCRRFNEFDAKKRHEVVRQHKLCWNCLQGSHFVTSCTSRYGCQTCGKRHHTLLHAERSSSVIADDSV
GSVSTMVLANIPMQCNSTDRSSYSNVMLTTVVLFVVDANGTQHPVRALLDNGAQPNAISERLSQLLCLPRMRTHVSITGV
DGTTTQASCEMKVEIRSRFTQFALKLNFLVLSKVTANTPATSFSTSCWKLPAGLALADPEFHQSGRVDMLIGASHFYTFL
REGRLKLSEHGPLLVETVFGWVVTGEVLREEAIIQQQAAQCHVMLSSENISDQLERFWKIEELHVSHFSADEQRCEAYYE
QTVSRDETGRYIVKLPKHQQHSTMIGKSETTSLKRFAGLERKLFANSQLRQQYNEFMLEYIQLGHMVPVSPDNLDAATCC
YLPHHPVFKETSSTTKMRVVFDGSAPTSTGHSLNDALLVGPVIQDDLLSLIIRFRKFQVALVPDLEKMYRQVLVHPEDRP
LQRYGGAYELRTVTYGLAPSSFLATRTLQQLAEDEGDAFPTAKDTLKKQLYMDDLIAGSNSVDGAIQLREELSALAQRGG
FTFRKWCSNSLAVLSDVPAEQLATKSSLRFDDKETISTLGICWEPEIDTFQFNISITTKSERDTMRTILSMIAELYDPLG
LISPVIITAKVLMQSLWRLKLSWDDTVPEELQRNWIRFRAELPELKDFSIPRFAFAHQYRQAEIHCFTDASELAYGACIY
IRSEAEDGSIHVNLLASKSRVAPLKALTIPRLELCGALLGARLHEKVMAAMEIKFVAHRFWTDSTVVLDWLNAESKTWKT
FVANRVAEIQAIRDAVWQHVSGQENPADLISRGVLPHQLINNQLWKQGPQWLSERKENWPQQKERTGQITTDEIRSNVVL
TTQIQEKNEIFTRYGSYQKLIDVVAYCFRFVHNARRLQSRISNSALTVKELADAKKRLVKLVQAEEFTNDLYKIHKGIPV
ARNSTLKLLNPFIDNEGIIRVGGRLRNSDLNYNIKHQIVLPGFHPFTQLLIMDKHVKAMHGGISSTLNAVRDEIWPINGK
RAVRKVIRNCFRCCRANPQPIIQPEGQLPAERVTVNEVFSCTGLDYCGPLYLRPTHRKAAPNKCYICVFVCMSTKAVHLE
LVGDLSTNSFLMALDRFVYRRGKPKHIYSDNGTNFIGAKNELHQIYKMLFNDSADSKIAKHLAKEEIQWHLIPPRAPNFG
GLWEAAVKVAKTHLIRQLGSSRLSSEEMTTVLVKIEGCMNSRPLVPLSEDPNDLTALTPAHFHITNNLKVILEPDLKEVP
MNRLGRYQLLHGYTQNFWIHWKQDYLKNLTVLHRSAKQSKQLSVGDIVILKDEQLPAVQWPLARVVEIHPGADGISRVAT
LRTASGIVKRAVSKICPLQCSNQRMD
>DrNGARO1_gag#LTR/Ngaro [Danio rerio]
MEPTSNNNNALTTSESSALPDTPAAAQRYTAPQTKEPEADAPVRGRRPIRAATTQRRQISPSPITPSRHLPSPASSYASA
RSSSHVSNKITIPELRKNLSDAGIHIPPRCNKADLLKLYSAIAPQSPPTMDAARSSRSRHAPQTTPTTDNARSSRSRHAP
YPQHSTSQTELSHPGQSKKATQKSSTTSKKASRPHIQESRTTPAISFQHTETPLANISTISHANQPFTTSLTWPPAPHSS
STPSPPLHTTAISHSHSQPPIPNLPRTSTQLIHTTSSSIHNAQPLSNPFTLSSIPPYNPPPSLHQALTHSSSTDAAQHPT
VPSQISSSHPPYNLFTANLLPVPHNATVLEPPPVSNAAKNLILSGADIDLSSLLSPITPPTAERQVDCGEFTLTLKSSNT
TQSRTLSLAEFQVAFSRFTDIICSVFPHRRRELNDYMAIISELALSYGGTHFYTYHKLFSAKCAIRVTQWNQCPYWGALD
TDLHNRVFLGCRNLSCAVCRSCLHPTTSCPFIIPSSDKESPNPRSTSYVPRPSTSAIPALLPPSLTSSQLSSSSNPCFSF
NIGRCFRHPCKFPHTCNYCGGAHARLVCPILKANKKIKKLFIDSCQCVSNCI
>JDV_pol#LTR/Lenti gi|9628093|ref|NP_042683.1| gag-pol precursor (gag part clipped off) [Jembrana disease virus]
REALLCPFWAEERIPSGEDFCDPVCSPVGIRLNRQPFIKIFLGGRWVRALIDTGADEVVLKDIHWDRIKGVPAASVVQVG
VTGRNIARRKSNVEWRFKNRYGIVDVLFSNTPVNLLGRSVLQSIVTKFTLAAHTKQIQPLPVKLHGPGPRVPQWPLTLEK
YKALKEIVEELLKDGKISRTPWDNPFNTPVFVIKKKGGSKWRMLMDFRALNKVTNKGQEFQIGLPYPPGIQQCEHITAID
IKDAYFTIPLDENFRQYTAFSVVPVNREGPLERYHWNVLPQGWVCSPAIYQTTTQEIIAEIKDRFPDIVLYQYMDDLLIG
SDRPDHKRVVSEIREELGAYGFKTPEEKIQEEQVQWLGYELTPKRWRFQPRQIKIKKVVTVNELQQMIGNCVWVQPEVKI
PLSPLSDLLKGKTDLKDKIKLTEEAIQCLETVNKRLKDPEWKERIKEGTELVVKIQLIPEGVVYDLLQDGNPIWGGVKGW
DYNHANKIKKMLSIMKKLSRIVMIMTGREVSFLIPGDSEDWESALQRINTLTEIPEVKFYKHACRWTSVCGPVIERYPTY
YTDGGKKGSKAAAAYWREGKIRREVFPGTNQQAELKAVLMALQDGPAKMNIITDSRYAFEGMREEPETWGREGLWKEIGE
ELRRKEYVGVSWVPGHKGIGGNTEVDQEVQKALQGPITVSLPQEILLEAGETKLVKTGIFWEGLRPCKLRPEEGLKLKGS
LIDEELQLEITNTQNSRVGIRQGQTIGTCFIEAIPQAIEEHEKWHTTAEILAREFQLPRRVAREIVHRCQACKRTVSCPR
RGTNPRERFLWQMDNTHLEGKIIWVAVETNSGLIEARVIPEESAQSIVFCILMLVYRYTVYHIHSDNGPCFIAQKVEALC
KYLKITKTTGIPYNPQAQAIVERTHRDIKDKIAAFREDCETVEAALSLTLVALNKKRGGIGGHTPYEIYLESEYNKYQEQ
QNHYNNFKTEKWAYVRDKRKVWKGPYKVLWDGEGAAVVEENAMPTLYPHRHMRFIPPPNTDTQDGNL
>ZAM_env#LTR/Gypsy 5889-7490 [Drosophila fruit fly genus]
LKPFHLHSRSCHGAYQSIFIHNFNSTNLLAKVPVGKTLVIGNYKKISHIIDLSEYTNCIEKLYHTIDTLRQDETLTDSIS
ILNAKLAQTQSKIDALTPFSRHKRGLINGLGSLVKVVTGNMDANDAKNIETEINHLKSQSTTISDNFEIQNSFNDEVQLR
FKNLTRHINNEQNLIKNFFENTQNTIYTKIYNNEEEIKKLQYINRLNYNIDLLVSHLSDIIESTLLAKINVIPKLILDKT
EITKIKQIFKTQNYTIKSEQHIYNLLKMNALNYQNKIIFSIKIPIFLSCNYEMARLIPLPINSTQFVIAPKYLIYNNKSN
SMFSTMYKCPVIEEQFVCEIDSINNLKNNTCLGHLIQNKTSYCDIKETGLTTDVFEPEKGFILVFNGNNLPIISSNQTIT
SINGSAIIKYNNCTLKINEINYDNRAVSTEEHPDFFLPPMRKLIKNATINILTLERLHLDTLTTSNKLLVVAAGNSRHST
TLYILFTVSLVAVILTWTLRRDTHIFHTGPDHILPIVAPPIPPSMAFAPNWGG
>YOYO_env#LTR/Gypsy 5509-7056 [Ceratitis capitata]
RTYIQIKFFSLFICMSYADIQIHDYSSSHLITIDNGYSKIKDGTLNFIHIIDIQAYRNVLENITDMIEKSYPPENPIYPT
LQHEAQQALEMLEIVEPIQNPRIRRSFDILGTAWKYLAGSPDHDDLNMINNNLDKLITNNNNQIFINNAVKNQINKLTEI
TNNILQSIKNDNMIANEIALNLQNRLRLIKEEIINIKYAIQWARLGIVNTIILNKKEIETFVKEFNKENMPFNTVEEALE
LADINVLSNSTTILYILKIPLTTREVYNNYIIKSVIRNDVMINLKFNNVLKNKNTIYGIKNQCKKYNKVSICKQEELLDL
SNDFCISKLIKSQNSSCHMVNSHHIPRHELITPGIIFLNDYHGNIVMNDNIRIMNGTYIINFRNASITINERTYKNFESP
VMKVMPAIAQPTPIEESITKLLSLEALSELNVNYPVEIHSLQIERTVNRISSGITLLMVIILMASAINYFHKKTKSTKPT
ESSSEDNQLQEIITEAPIPETRTFQIFQTLEDKRF
>Cigr2_gag#LTR/Gypsy-Cigr CionaInt  from_retrobase [Ciona intestinalis]
MEERRLKTLELGLSCLEAENQLLRSQISSLTRRLGNLERRFTETEEVKPKVEVKDTSSPASVIFPRMFDGCSNWGDYKQY
FENIGRVNKWSVQEMGRHLAAALSHETLEVQRNLTGEDKWNYDCLTKELDRHYGNTNSTRARALFHAAAKMPEETYLRFG
NRLRRIIRDAHPALPVDCVQRYLVEQFISGLDDMSIRRNLAQRLPDTLSEAVDMADRLQSFDFHAIQQTPLHECRDSSGT
SGVRRPVQVCAFCGETGHWKRDCRHFNASRHGMRTSNQTSLNGR
>JDV_gag#LTR/Lenti gi|9628092|ref|NP_042684.1| gag precursor [Jembrana disease virus]
MKLSKLEKALKKVRVTPQRDDTYTIGNVLWAIRMCRLMGLDCCIDEATAAEVAILIGRFQSLDLQDSPLKGKDEKAILTT
LKVLWSLLAGHHPENSDMAEKYWEAWTIRERESQKEEEGEITSIYPQLRKNFPAVSTSDGSPRYDPDLTKQLKIWADATE
KHGVDHHAVNILGVITANLTQSEIRLLLQSTPQWRLDIQLIESKLNAREHAHRVWKESHPEAPKTDEIIGKGLTAAEQAT
LTTQECRDTYRQWVLEAALEVAQGKHDRPGPINIHQGPKEPYPEFVNKLVTALEGMAAPETTKQYLLDHLSVDHANEDCR
AVLLPLGPSAPMERKLEACRAVGSSKQKMQFLAEAFAAINVKGDGEVQRCYGCGKPGHIRRDCKNQKCFKCGKPGHLQRN
CKSKNGRRSSAPSGQRSGYHQEKTSVTPSAPPLVLD
>HIV2_vif#LTR/Lenti gi|9628883|ref|NP_056839.1| vif protein [Human immunodeficiency virus 2]
MEEDRNWIVVPTWRVPGRMEKWHALVKYLKYRTKDLEEVRYVPHHKVGWAWWTCSRVIFPLQGKSHLEIQAYWNLTPEKG
WLSSHAVRLTWYTEKFWTDVTPDCADILIHSTYFSCFTAGEVRRAIRGEKLLSCCNYPQAHKAQVPSLQYLALVVVQQND
RPQRKGTARKQWRRDHWRGLRVAREDHRSLKQGGSEPSAPRAHFPGVAKVLEILA
>BEL1_Dmoj#LTR/Pao 548-4974 via tfasty with BEL13_AG, 1 frameshift and a 600 bp/200 AA internal deletion around bp 1950 / AA 490.  [Drosophila mojavensis]
MSLESLKTQRANTRRNISRIRNVVDPQLREEKSAPVQAELKCRLEILEAYFKQAMVLQTQIEKECSTDTGRTELEELYVE
IKVCITEQLTEDIHESTFAAVSGPTFLSSAKLPRLALPTFDGNYADYKNFSALFNQMVDQQNSLSTIEKFNQLISCLKGP
ALETVKAFQITPENYRKALERLNQRYDNPTLVFLDNISSLFMLKSVSKSNSHEIRSLIDNSTALYNSLKSLGNEAQIAQA
MLIAIVMDKMDMETKRKWNESLDYSKLPTWDLCVQVVERHCQYLESCGKSESSQARTATASKPRSQTTTRHGLSFNCSTH
SCPLCLSSEHRVSRCSRLQEMSVAERYEAAKRHGLCLNCLGKGHQASKCPSTQRCRCCSRLHHSLLHREAAVSRSTTMLP
SGSNSNDVVTHTHTNRTDQVILATAIVEVMDASGNYRIGRALLDSCSQVNFISEQFAQALRLSNGSCESAALVSHTHTAA
YIAFLREYEDLNHMSLVHSPRLDEPHNYIPHHCVFKPNSTSTKLRVVFDASNRTSSQQSLNDLLMVGPTIQTDLYTLLLR
FRTYKYALTADVVKMFRQVLVDYRDRKFQYILWRDSTDKPLRTYSLNTVTYGTASAPYLAIRSMKYLADLHMQTHKLGSQ
AINSSFYVDDFLCGHDTAEGLQQLKAEVIEVLGKGKFELAKWHSNHPDFVDDSTIKDLNLEDGSVTSTLGLAWNQRLDGL
LFAFRPKCSVDAITKRTILSVASSLFDPLGLVAPIIVTAKIILQELWIVKLQWDESVPQNLYLTWKSFAASLTSLESLKI
PRFCMQPNTKELQLHGFCDASIRAYGCCIYARTVAADGEVQVHLITSKCRGAPTRKLSLPKLELAASHLLAQLYVKIKGI
FTSKQTYLWSDSSIVLHWIQQHSSTLSTFVGNRVSDIQEATPDCQWRHVPTKLNPADLVSRGCTPIELNESIWFMGPAYL
KQSSNTWPRDKHHEPDPEIVALEMRKSAFKATTDINYLLDTLRNISSHRRCLRIVAWMLRFIHALRKPVELSTPSLSPQE
LQRAFNCIIWNLQQQHFADEIHALNKNRQISSHIKFLNPFLQITDGYQLLKVGGRLELANAPEVQKHPIILPSKDDFVRH
YVQFLHVQHYHAGSKALVALIRLQFWIVNARDLARSIVRRCVHCVRYKPKLQQQLMGNLPVERLTPSRPFAHCGVDFCGP
VNVYLRIQGKAPRKAYIAIFVCFATKALHIEVVSDLSTDAFLPALRRMIARRGLPVDIFCDNATNFTGASNQLKELRTYF
FKQENQQSIISFCTNEFINFRFIPPRAPHFGGLWEAAVKSAKGLMTRSLMNARCTFEELATITAEVEAILNSTCVALPTH
NIEDEQLKSLDRWRLITGIKQYFWRRWLTDYFNELNVRHKWTKPSPSISIGDMVLIHEDNVPSQKWIMGRITATIPGRDQ
RVRVVDVRTTKGIIQTSSQNSDSSCLLKDCVIQWDR
>BEL-1_Adi#LTR/Pao 53-6345 via tfasty with BEL-12_NV, 1 frameshift and 2 stopcodons. [Acropora digitifera]
MSFQDQQGASPSQDGVYRRELMQKLKTSRSGYKGHVSRIEREIEISMMAGESEAVRGKLANLESAFMNFGRAHDAYVLRL
DDPEEIFQATTWFDDQRDAYHVFVRRAWEWLDSLQVLPRVDTCDSASQRGSHLTASKVSSNSVSKASTRLTVKVKEAKVE
EALAKLRLQQLKKKFELQQRRVTVMREEELLEVKSAIEQARLRVQILEGDDQSEEYFDRSHGLPRATSDPEIKRYDQRTE
VYSNVEPELTPDMKATMPSRPSREYTYTRADLDPATSRHVDKHPGLKPAMSRHIHVRSDFDLxPRMGSDTLRGHRDFDCV
TPKLKREPMYGELGTDVDDGYSPYQGNLERLLHQQQQMIGLQQQTFQTMASTIKQGFSLPKPDISKFDGNPLDHWNFVRS
FDNGIAKNASDDAERLSYLLQYCTGAARDAIKSCLALDSTVGYRTARTLLEERFGHPYKIAAAHLNRITGGAPLKPHDQR
GLLTFADQLRDCQNALESIGYMDEINSADNLRNVIERLPFHLKVKWLEVADRLRENGLRPRIHHTSEFVSKRARAVNVPV
FGNVVTCERGKVKKLSYPNQSRGASFLSQAKVVPSCERRGLRNDNPGVNQSSLNIFGKCVVCNGLHQLWNCEEFKRKPYA
ERIKILREHKLCDNCFKVGHTARGCLQRSACYIEGCNKKHMTVIHPPQLSLPDHVYTDRSCEVEPSSFFARNRPNQSYAA
RYSVGSSRDAATQGHITVADVNTSGNFSTQSHAIGAGTSYHGNRNQPTSTRICLRIVPVRVHDNNSGRILETYALLDNGS
DVSLCDAELVKELDLQGERRDFLLITQETKDSAKSGLELKLTISSLDGTSALEIQRVWTVDRLNVLSRSIPRAEDVQGWS
HLSDIELPEIQNKDVRVLIGCNVPEAFWVMEERRGKRGEPIAVRSLLGWTLMGPTENHQEDSKFSVNFVRLEDGRDSRDE
ALLSQVEKFWKTDFVDTLSSTKVAMSVEDEKALKLMEDSVVKVSGHYQVALPWRFQPPYLSNNRIAAEKGLQLLRNKFRR
DEEFFRKYKDTIDDYIAKGYAHRVPDEQLDVIDKPLWYLPHHAVFHSRKPDKLRIVFDCAAKFRGTFLNDQLMHGPDLTN
NLFGVLNRFRQEAIALVSDIEGMFHQVKVDPKDYDALRFLWWQDGDLTQQPVEYRMVVHLFGSTSSPSCASFCLRKTALD
NEGDFGHHVIDTVLKNFYVDDCLKTVSSKAVAVQLRIDLCHLLSRGGFRLTKWLCNDKDVLETIPKFERARSVLDLDLSN
QNLPHERTLGVQWNMDSDTFTFKVEPKHKPFTRRGILSTTSSVYDPLGLVSPVIVPAKKLLQDLCQQKIGWNDEIALEEL
AHWRSWISGLPKLSQVAIPRHLKPADFGEVRSCHLHHFADASQVAYGAVAYVRFESANRQIHCSFLASKSRLAHVKPMTI
PRLELSAAVLAVRIDRSLREELEFTIDKSVFWSDSTSVLQYIRNQDKRFRTFVANRLAVIRDGSQPTQWKYVPTSDNPAD
LVSRGTSVEELIHQSRWFSGPKFLWKEESSWPTMPKTLKEISEGDPEKKKESKSISHQPSHSLDSMIQRYSSWYKLKRGV
AWPLQFIKSLQFRLRLPKNLTNLPDTxFPPKQLSVEDINTAEIQLIKYVQRSSFPHIMAILKRETPARQQKSELKYSEPF
GSIYKLRPWLDQSGILRVGGRLENTHIDYEAKHQTLLPYNHHVSSLIIMAHHELVGHFGTEYVLASLRQKYWIVKGRAMV
HKVIGRCLICRRHNVRRGQQLMADLPSDRLTPDNPPFTHVGIDFFGPLYVKRGRSILKHYGCLFTCLTMRATHIEVTESL
DTDSFINALRRFISRRGCPRIIRSDNGTSLSAGEKEIRDAINTWNQQKIEKYLQQKDIQWKFNPPGASHMGGVWERVIRS
VRKVMRCLIKEQLVSGEALRTLMTEIECILNSRPLTPSSDSPADLEALMPNHPLLFRPNNTMPPGVFSKDDMYCRRRWRQ
IQYLSNVFWKRWLSEYLPTLQERQKWTKPRRNFATGDLVLVVDEKVHRGQWPLGRIVQVHPGKDGVVRCAKIATRSTTLT
RPITKLCFLEQDFRSSYC
>BEL-1_AA#LTR/Pao 183-5462  [Aedes aegypti]
MGLDHTPKKTTVDPEQLQMLIHQRGQIKGKVTKINNCLEKAEDDPSQISASLLKVYGKKLEIHYSEYTEAHREVIAMIPP
AKMEEQDEKLDEFDALHTEALNRMERLSEYFAKPVPATAVASGAGQVIVQHHPLKAPIPSFDGRVENWPKFKAMFEDLVV
KSGDSDAIKLHHLDKALVGDAAGLINAKMIRDNNFAQVWKQLSEQFENKRVIVDTHIDGLLQLKTVAKGNFKDLLELTKS
CERHVAGLEYQGLVVDDLSGIIITKLVTSRLDDHTLQLWERKQEHGELPSYEDTLQFLKGECQILERYHNSRHPVAAKEP
PSKQSKPVNQKVHTVTSPNSECQCKVCGENHRHFECPIFTKMPIQERIIKVKQLRICFNCLRPGHCAKDCSSKRSCATCH
KRHHSLLHEDVPSNSTETKVLPDKNSPNLAAEAGAVPKIVPQPNPNSSCSCNHTQTTKTVMLLTAVVNLESANGQFVPCR
AMLDSGSQVCFVSESIANRLMISREPVNVPVTGIGGAKIYVREKLTVTMQSRCSDFSTDIDCLVVPKVTGIIPSVKINTS
SWPIPAGVQLADPTFHTPDKIDMLIGASKFFTLLKSGHIHLADGLPELYETQLGWVFSGEFDNVAANTVVSHPVSVNSLA
ETMSRFWEIEDVSQSTKDEGESDACEENFRCTHRRTSNGRYMVSLPFREDVASLQDNRSVALRRFLMLERRFKRDPTLKL
LYSDFIAEYEALGHCREVNESNDDPTKRRYYLPHHAVLRPTSSTTKLRVVFDASAKCNPSDKSLNEVLQVGGVVQSDLLS
ILLRFRVHPVVFTADIAKMYRQILVSEEHTRFQRIFWRSESNQRLRVLELLTVTYGTAAAPFLATRCLVQLCHDEGNKYP
IASNIIIEDCYVDDVLSGADTVEEAIEAQRQLEDLLHLGGFPIHKWSSNCQELLENIPEENREKLVRLDQTSTDEVIKTL
GLTWSPNSDEFLFITKSPMKASETYTKRKVFSEIGRLFDPLGLVSPVIVVAKILMQKLWMSGLSWDETLEGDLLLSWMKF
CDALHQMSQIKIPRRVFLCNAVAIEIHGFSDASISAYGAVLYVRTVFSDGRAEMRLLCSKSRVAPISELSIPRKELLAAQ
LLSRLVGKVAGSMKVKFDDVTLWSDSQIVLAWLRKPLTSLQVFVRNRVAEVVSSTKDYNWKYVPTKENPADIVSRGCLPR
ALASNELWWNGPLFLQSANYNSEPPGPLSDEELPELKLTSFVSAIVYNADNLPVFAKFSSFRKLQRVIAYVKRFISNCKI
KDPKLRILHCYLTIPELRQSMDVIVKVVQHEVLGDEISRIENNEPCKRITSLNPVYDNGILRVGGRLKNSSILTMAKHPY
ILPRHPIVDLLIRAYHLENMHVGPSSLLVILRGRFWLTEGRSAVRKITRSCVTCFRARPTMTNQLMGNLPACRVTPAHPF
EITGVDYAGPVFVKQGRRKPVVEKAYISVFVCMVTRAVHLELVSDMTTEAFIAALQRFVSRRGLPREMHSDNGSNFRGAK
AELNELYKLFRSQSAVDKIEGFCLSKEIAWYFIPPEAPNFGGLWEAAVKSAKYHLKRTLKDTNLTFEEYVTVLTQVEAIL
NSRPLYATTPDPDDPEVITPGHFLIGRPITAIAEPSYHDIAINRLGRWQFLQKLRENFWKKWRNDYLQTMQQRTKDHVKK
HNLLPGMIVLLEEQNLPPLSWKLGKIVRTYPGSDELVRTVDVLVDGTVYKRPASRIAVLPIEDNKQLLNLCSENASQPGG
>BEL-1_DKi#LTR/Pao 211-5434 via tfasty with BEL-5_DWil, 1 frameshift. [Drosophila kikkawai]
MAPERDITLCKSCNKSRLTNGVQNWVQCDACKEWYHFACAGVDDSIARVRWTCDLCIHVDRSSSTSTRAAIQPNESENAA
PNKDAAILSMEPNSNKPAETSFTQTSNNLMMAMLEETRESERKYIEQKYAILAQQQGMQERPIQLFGPTASQLAARQILP
ADLPTFNGNPADWPIFISMYENSSSVAGFSDAENMLRLQKSLKGKAYELVRDKLLLPALVPEVINTLKTFFGRPEQILDR
LIDKIRKITVHKDRLESLIDFAMAVRNACATMEACNLYAHLDNPMLLRELVDKLPTQHKLSWALHPRSPSIPVVKSFSDW
IYHLAEAASTVMPGQNSWSVNTHTQALPEKRHQAMSDSEDDQQQDAKPNPACVTCNSTEHYAAQCEKFLKSTVPERRRRI
SDAKACYRCLKTHRRKCFSKRDCGVDNCQSKHHPLLHRDAPRPELVSAHHKEADFEEQYFRILPVTLYGNGVRINTYAFL
DEGSSVTLIDEGILKHLKVCTSPEPLCLQWTGNTTRTEETSFKARMQISEMGSGRKLWLNNVHSVKHLALPKQTVDVNKL
VGRYNHLHGLPIKSYYNAEPMLLIGANNWTLAVPRKIREGRRNEPIASKCTLGWSIQGTSNANRNYSFHHCVCNWNDIEK
AVRESFNADPIAPRELFSKDDEKAKGILEETCKKVNGRYQIGLLWRDKNLILPESYSTALKRLECLRQKINKNPELFDQI
QNQIDNLVVKNYAIELQPADIAEDTNRVWYLPIFIALNPNKPNKIRLVWDAAAKSHGKSLNDFMLNGPDYLNSLTEVLMA
FRVGRIGVCADIAEMFHQIIIQQSDMHVQRFLWLHKDNKTPRIFVMRAMTFGICCAPCIAHYVRDKNAQEFKDQCPRAFE
SITEAHYVDDLIDSYTDDSEAIAVTTKVRDIHAEGGFAIRNWISNSTAILKHFGERQIDEQNPKELGDPEKVLGMYWEPS
NDVFKYTFRFARLKRDVLNGETVPTKREALQVLMSIFDPLGLLSCYTIGLKMLLQKVWRAGIDWDEELPDTLLGSWRQWK
TVLLQAAKSEFPRFYSTLLPNADQIDLHTFVDASEYAYAAVAYLRIKQGADIDTVLVAAKCKVAPLKPVSIPRMELLAAV
MGANLAKKVINIRRLNINSSTYWSDSKTVLQWLDMDPRKFQAFVMHRVGEIIDHTSRAQWRWIPTKENVADSATKFIKSP
NANRWLKGPQFLAKPENEWPEQDITLESGEPTELRKHVFIINQLKHFDFAEEYFSDWRRLYRAVATFMLYIKRIRAKCLG
NPLPKTLDPEIISKAKSWIYKQAQSRTYYAEITALKNNTAVNKSSPLIALNVYLDEEGVLRVQGRKYNINPDDAVVLPKR
SRIAFLITKDFHEKSHHIMHESTINIIRNDFYIPRLRVLYKTVRKACQKCKIATSRPEVPQMAAIPAARLASFERPFTYT
GVDYFGPILVNVGRHKEKRWGVLFTCLTLRAVHIEVAYKLDVSSCIMCLRNFMTRRGTPKEIFSDNGTNFKATEKTVKEE
LKKIDFDEITIKYEAIKWHFNPPAAPHMGGAWERLVRSVKTVLKSICPTSNFNDETLRTALMEAENVINSRPLTFVSLDS
GDDEALTPNHLLLGSTSGYKRMADDNTDLRLRWQQTQLFADKFWSRWVKEFTPDLTRRSKWFAKRPPIAIGDIVIVVDDQ
LPRNMWPKGRITEVVTAKDGQVRRATIWTPKGIMVRPVAKIAILDVGLKDGEDPKDVHGGG
>BEL-1_NV#LTR/Pao 84-5273 [Nematostella vectensis]
MGDPEPRESVDTDPELELNNKIDKEIEKLTFYLEDTDEMINSCDFEEMKMTSERTSQINARLNSLILELQELKLDLGKYT
ARAIRQWKKDTKDRYSMLLDNRDRMVRRLEEENKREIQIAEAEKYKLKFEQEERLHREVQQREKELWEERLQAEIRVAEK
KLEIESAAKASGSKLPELKITPFKGTAEDWIRFENMFISQVDNKKISAEEKFGYLLELVEPRVRDHLSNLKPGEVGYKIA
WERLREEYGQTKTVVAAHVDQILNLPILKSGGHAKVREFYETLSKSHDALETLGEGNMLRGLALSTLNKLQKIRADLVRT
DEGWESWEMGDVIKALQKWLKRNKPAEESEREPGDKRKERHYFNQKGVSPQTPKGRCIFGCQEAHWGDLCPIYDTLEKRR
KFFSENRLCFNCGRTGHRENKCNGRGCYKCKARHHTSLCHDKQHNAMLSGFTPTSDEKTLPAIIPVVIKGQTFWAYLDTG
SGRNFVSREVIRKLNLRSVRHESRHIVTVNGVKKQSMPVFEIEMNSVDGKARENLEVTGSQMVDFTTIKRPTIAELKAKH
AHMRDKSFYRTASEEYPIHVILSDAFYCKIRTEQIIKGQPDDPVVEGTTFGWVVHGGKEYADGRCMFVRETNDYERLYAL
DVLGIEDRSETDQSDVYSEFRENISRTDDGRYKVSVPWVPGAKLENTNEEPSRKRLRNVERKLRNDVELREAYEKIVRDQ
LHEGIIETVIDKSRGDRIFYMPHKPVVRANAQTTKVRMVFDASCKPHPLANSVNECMHTGPPLQPLMWDIMIRARMAPHL
ILGDLEKAFLQIAIKEEDRDAFRFLFNINDKEEHFRFARVPFGAEASPFMLGATIHHHLDRQPTELTNTVNALRENTYVD
NLMQTGNDVDELKEFREEATRIFESAKFPAHKWESDLQDLDTEPNPSKILGHVWDKREDILEIQADVSAQEKDPVTKRAI
LSKLSGVYDPLGIISPTTVEGKRIYRDACEEKRGWNDEVSESTKKAWFKWTGQLRNVKIPRSLVRDLRRVKTIHLHVFAD
ASNVACSAVMIAIVEDTTGVVKGLLTSKSRISKRNTSIPRLELVSGHMAANMVKNVCAALKRWPITSVTVWMDSLVALYW
ICNPGRQWKTFVSNRVRKIAEITNETPITWKHCPTERNIADLGSRGATIEKMERGEWFAGPDWLLKEEEWPEQPQLQTTK
AVKEEHKPVESSMLVLKREPDEWDDLLQRNSYWKTLRVTAWAQRFRANALAKMRKENKRKGPLTTDDIAQAEVCWVKRVQ
KYVQPDPQSPGWEVIKDEQRGVLKCKGRISGYEPIYVDDRAFVDKLVQHVHHQVSHLGVANTMSEIREKWWIPKLRSRVK
KVINECNLCKVFRAKPYGLSPTADLPSFRVEGGRPFETVGVDFAGPLNYKLAKNGKGKCYIIIFTCATSRAVHLEVTKSQ
TAEEFQRKLNAFITRRTRPVRIVSDNASVFKATATWIKKIRKSEVLQDYLAKQGIRWQFNLSRSPWWGGMYERLIREIKK
TLYKTMGRSSLHYEQMEEVVVDIERHLNNRPLTYVESDNGEDHVLTPNIIMWGQDSHILEDIEVDENEVSKLHARLMMKR
EQVWQRWRREYIHSLMESHRVKRGGNIAPDIGEVVLLVGESKNRGEWTKGKVVDHVRGRDGIVRGVSLLHKGHIIQRSLT
LVCSLEIRAASKQIPERAPPAASEVIVRPTRGAARDAREKVRVLLEDDE
>BEL-1_HM#LTR/Pao 39-5469 via estwise with BEL1_SM, 1 frameshift.  [Hydra magnipapillata]
MVKRKNQKSNNQMEDQLTVQNEVSALNRKKIVLKSSFTRTKHQIIQQIGDDEPTCKNELRELSNQLTKTQNEALEIMVEL
SKKYELLESKENVGKLNTEIEKLNDEFAEIMEHVNEWILRNGSLKSSLKQQRMEKELKMETKKQCYQWLSTQKSNDQYED
NKEENGNSEMEPIKSTHIMRKMENEIIDLDQKTAKIGHDLWKQLKRVSIPIFNGDKKNYENWKASFYACIDQAPATSEYK
LLQLRQYLCGDALKAIEGLGHSSFAYEAAKERLERKYGGTRRKILMYLDELNNFKPMRENNPKDVEKFADLLDVAVTNLK
EANRTEELGDGTLYHQLQKKVPEIMLIRYKRWVYENKLNENVKTLKKFIVEEADFQIAATETLHGLKKTIGSKAHEGNSY
FGNSDQKKKINWIQKCSVCKNDHKIWECPTFQNQNIKERWETAKKNKLCFRCLNSNHSSKECRNTRICGIDGCTDTHNRL
LHKKSHQKETISEDYKEKDTILENSHTSNIQFHSNHVMNYISLRTVPVILRNGYKKVVVNALLDDGSTKTYLNSDVAAEL
SLQGKTEKVTVNMINGKIDSFETMPVEFQLESLNGETKITVEAFTVNNVTGNLKAVNWANMSKSWKHLRKIEFPNIGPKP
KIDILIGVDYAELHCAIKEVKGGFNEPVARLTPLGWTCVGGTGGSLQTHFTKITSSTKEIEDANNTIKKLWEIEGDEEMQ
FRKTMTSPEDSTALNIVTNSLKTENGRYELKLPWKGNRHLDNNYTMALNRLQNTEKRLMKNKSLGEEYNNIIKQYQEKGY
LEKINKRDLGDGWYLPHFPILRPDKSTTKVRIVFDGSAKYNGKSINDVIYQGPKLQQDLVTVLLRFRKYPVALACDIAEM
YLKIGIHKDDQRYQRILWRNLDSTAEPEVFQFNRLVFGINSAPFMAQFVTQEHARKYxKKFPLASEAVLEATYMDDTITS
VVDEKVGIQLYKELTLLWGSAGMFARKWLSNSVEVLKITPENDRAEHINLDSGELPAMKTLGVVWKAKPDLFSFHSVTTE
ENTVYTKRILLKKMATLFDPLGFLAPYIIRIKIIMQELWIDGIEWDDAXPDRIANNVDQWFQELNDLPKINIPRCLQTTS
TVTNRSIHVFTDASCKAYGAVAYQQCLYDTGEVTCVIIMSKARVSPLQSISIPRLELLGAVLGLRLAEKIVKALKLETKD
VTIWCDSLNVLWWIKNQSRKLKPFVANRVGFIQSKTELKQWRYIPTKTNVADLLTRGTTVKELESNYVWWHGPSFLNSLE
EKWPQNHIEVTQEASIEVKKNPVLMNFALSTEVTKQLLDINKFSCWKKLVRINGWIHRFIGNCRFETDFRKKGDIAADEY
HESEKEIIAKAQKESFKEEYSNIEKGKPISISSKIISLNPQIDEDGLLRSCSRLQNAHYLPYDVKYPIILPRGHTITKLI
VKHYHDEANHVMGTNQLLTKLSERYWVIRGREEIRDAEAKCNKCKLRRCKPAQQLMAPLPAMRFKEPLRAFARIGIDFAG
PFLTMQGRGKIRQKRYLCLFTCLLSRAVHLEMAYNLDTNSFLNAFYRMVNRRGLPLEVLTDNGTNFVGGCRELNEIVNDL
DKDKITNSTADKGIKWHFNAPLGPHLGGVFEIMVKAVKRAMTGILEKADITDEELCTAFTGAESLLNSRPLTYQSANIKD
DIPLTPNHFLIGQVGGQFAPDSVQSKGYHPKKRWRRVQELLSHFWKRWMREWLPSLSKRYKWNQKKREIKTDDIVLVISP
DTSRGHWPLGRITGVFEGKDGRVRVVKVKIGEKEFIRPITRLCLLEFDN
>BEL33_DR#LTR/Pao 87-5984 via tfasty with BEL4_Cis, 1 stopcodon. [Danio rerio]
MSKPSSKAGSQKRAASSSRSSRHSHGSSAVITAAAMARAEAEAVKAEITFAKKESELKVQQAQLEASLETLRQEKKAAAI
QAKAEALETAAELESRGQSSLSELPIEDATERTQAYVSEQMESDVDAEAPVPDGPFYDKESIPFSEMQQPQNTVSYLQQE
KQCTSYATPPRSQPSNAENIQNPAISQSTSVRFTISGQRKAFTQSPHNVYHPEAQSPAVQGSEERSRHRGTPLSYSQTMS
GTPLYAGPHQSNLYADSQISDVVRFIARRDLVSTGLTQFNDQPETFRAWRASFINATEDLNISPSEEMDLLVRWLGRESA
EHAKRIRAVHINYPLQGLSMIWKRLYELYGAPEMVESSLFRRLENFPKISNRDNCRLRELSDLLMEIQAAMQDGDLMGLT
YLDTPRGVNPIIQKLPFSLQEKWLTVGSKYKEDYRVSFPPFKFLVDFVCQQAKMRNDPSFSLTAIHEESHRPNKQLNKHV
FPRAVVTHKTQVSSGSPLAASELKNKINPAKQCFLHDKPHPLSRCRGLRMKPMEERKSLLKQQGICFKCCSSILHMAKNC
DEDIKCSECGSSTHIAALHPGPAPWTTDPKQPVAENQKVSEDIPVETEVSSACTEICGNSQLPRSCSKVCLVNVFPKNHP
EKAVKAYVILDDQSNRSLARSEFFDLFSITERSIAYTLKTCAGTIETEGRIAQGFQVESLDGGLTLSLPALLECNEIPDN
RSEIPTPEVISKHRHLKHLARYIPEPNHHAPILFLLGRDIIRVHKAHRQVNGPPNAPFAQKLDLGWVIIGDMCLGKVHKP
TFVQAYHTNILDNGQSTHFQPCPNNYNIKERSQSVSLTKPLIRENTQRLTEWDVFQKTKDDEKTAPSIEDKLFLQIMDRE
VYKDDENSWVAPLPFKEPRQLLPNNRPQAVERLKSLLRSFRRKPEIKRDFVAFMEKLFENDHAEIAPSVRPNEQCWYLPS
FGVYHPKKPSQMRVVFDSSALYKGVSLNKVLLTGPDLNNSLLGVLMRFRKEPVAFMVDIQQMFHCFRVRPADRNYLRFLW
FHENNPENELTEYSMKVHVFGNSPSPAVAIYCLRCAAQEGETDFGEDARQFVEEDFYMDDGLKSLPSPEMAISLLKRTQD
MLAGSNLKLHKLASNSKKVMQAFSSEDYANSLKELDLGVNSLPMQRTLGLLWNLETDCFNFQVQSDNRPYTRRGLLSVVN
SLYDPLGFVAPITVQGKLLLRELTANATDWDSPLPASGQELWDSWKNSLQELQHIQVPRSYGLVSPSGAKFTELSVFSDA
SEKIIAAVAYLKTVDSNGNCHAGFITGKARLAPLPELSIPRLELCAAVLSVNMMETIIAEIAIRFDEINLYTDSRVVLSY
ICNEKRRFHVYVSNRVQRIRSRTKPEQWHYVSSDHNPADIATRPITPTKLQDTIWFSGPAFLHQLKTETVPKAPFPLVDP
DRDVEVRTHMTLSNTSFSRRFERFSVWNRLIRAIGKLIHIAHSYKPDQKGHTPACKGWHCCKLPPSADTIIQSTKVVIRA
IQQETYTDELQCLKQNKPLPKTSTPxKLDPFVDQSGLLRIGGRLIKADLSSEEKRPLIIPGKSHVALLLIRHFHERTHHQ
GRHFTEGAIRSAGYWIIGGKKRISSLIHTCVVCRKLRRGCETQKMADLPKDRLSAEPPFTHVGLDVFGPWSVCARRTRGG
FAESKRWAVLFTCLNIRAIHIEVIESLTTSSFINALRRFLAIRGPVKQIRSDRGTNFIGACKDLQIPSNVDEKAVERFLS
DHNCTWTFNPPHSSHMGGTWERIIGLTRKILDSMLLQTSSSRLTHEVLSTFMAEVTVIINNRPLIPVSTDPADPFILTPA
TLLTQKSSTDLVPPENCEKPDLYKQWRMVQNLASTFWDRWRKQYLATLQYRRKWQHQQTNIPKGSIVLLKDSQSKRNDWP
LGIITETYPSQDGRVRKIQVKIIGKDGPKLFLRLINEVVLLLQENS
>BEL2_Dpse_pol#LTR/Pao 2-4855 [Drosophila pseudoobscura]
MGHMKIVPASKVPKRHYFIPHHCVLKPESTTTKLRVVFDASCKSTSGKSLNDILQAGPTVQSELMSILLRFRIHKYVFTA
DIEKMYRQVWMNPEDQFHQMIVWRNNPSEEIRYYRLKTVTYGTTAAPFLATKCLDHLAIQYKDRLPVGSTTLKTDFYVDD
CLTGANTIPEAIHVRQELNKILLPSGFKLRKWCSNNEKLLQGIPKEDIVTDVKLGETLEHYSVKTLGLIWMPKKDTLCGR
TQKSQATRITKRVVCSELAQIFDPLGLFAPVVVKAKIFMQQLWELKLDWDDELPLQHQTEWKEYRDDLQTLNKMQIPRHI
YDGKIPVTQELHTFVDASERAYGAAVYVRATYKNNQVSVRLLCSKSRVAPTAKQSLPRLELCAAVLGAELTNRVRQDLHM
DRNTVSGWLWSDSTVVLSWINASSSTYHTFVANRIAKIQALTNQSQWRHVSSANNAADVLSRGIAASRLADHNLWLYGPL
FLHGSRDNWTKAPNIEPSNLERKAKHVSLPITPSALGDELYTCKHSNSFHKLQRIVAYMLRFCYKTNRANTTTLCAEELT
HARTIILRTIQQVEFTAELKQFQRYKTVDKKSSIISLSPFLGDDELIRVGGRLEEALLPYNAKHPVLLPYNDPIVKMILR
ELHEENMHCGAQALRAIARQQYWIINDKTMARSIIHSCVRCTKARPKLMHQIMGNLPAQRVTQARPFLNAGVDYCGPIAI
HHKIRGKRPDKAYIAVFCCFSTKAVHLELVSDLTTEAFLAALRRFLSRRGKCQTIHCDNATNFVGANNQLKELEDSIFSS
KASALITNHCNKKQVDFKFIPPRAPSFGGLWEAAVKSAKRLLITTTNTASLTFEELNTVIIEIEAILNSRPITPMSNDPT
DTTALTPGHFLIGEPLTTPPDVNADHQGKTLVKRWELVSRLKHSFWKQWSTEYLQELQARHKWKTASPNVPEGLLVLVKE
DNLPVMKWPMGRIIKTYPGQDNHVRVVDVKTASGVYKRPITRLAPLFPEDVAIKRPHNVISDTTEIDEPPTQRTTKLAPT
LTSTLVVLLLMLPLAWSQSINVTQFANKPGIFYEKLGTSRIATSEWTMIVYYDLDPYWKDMQLMSAGISELRYMCPELKN
VPACNSIVQHFQHVYNELQAGSVLMKNSRKRRSPLDIIGNVASSLFGVLDAKYAEEMTQVIEKVETNEDFLLHLLQNQTS
IVDATINVVRKDKLTTDNRLKTLEQHLATINRERGSYHSDHLTQAYLGLVAQLTLLTTTLQRMQSDISDVLIGIHHRRIS
PTLVSPEQLIDQLDQIRDHLPQDQMLPVTTKEVIQLYRIMRAEGTPTAKHVIFKLTLPLVSTAQLEVFSIIPIPFWDSTS
WSLFDLRTTIVTVNIHRDQFMGTTQEEFRRCLKVHNEEFICFDHQTIFNVDNRCEFQLFNNKTETLCQVTHTKADSVWLK
TQHPNKWIFATHSTTKLQAVCNGVPSTITLEGTGLLSMSPGCTARNPKVSISTFSTTISEVKSTYTRFGDVNPPETSPSP
PMWQLKNQTSDFLQELDDLRQQLSAINQHELPHHLTTVQHHQLVAYAALAISILLIIAFIFRKKYQLWKPRPSNPDPATS
SPPIPFTRRFTVDLNDG
>BEL2_Dmoj#LTR/Pao 609-5831 [Drosophila mojavensis]
MANLDASAVAPEDRVRFYKLKVQSVFERVKKLQSKVDSDALADHSDSTLNVLLEHIDKLSHSFSKAHESLEELDFTEMSS
NLRTDFDDLIMVMQSTIMSEVQSRTAQVHHSSTFSRPSDPPRASAPRLQAAPALPPLKLPTFSGGYANWADFYSMFSTII
ESRPEISNMERLQHLRSCLDGAALDTVRSLEISNDNYTIAINLLKQRYDNRRLIFQAHIVKILGLKRVENGSITKLRELS
DSFNVHMRALSSLGTTEQIASAMIAQILLQKLDEASQAKWEEKLDNSETALQIPRYEEVSSFLELRCRTLESMKFALTNY
SSSKPMNSCSKVATSRSAFLVTGHSTHSCNFCNDLEHTIYKCPRFANLSPSLRLNEVRKAGLCLNCLKGGHQSRQCGSRS
CRVCGVKHHTLLHLGHSSTSQAAIPPHQQSSTSRVQTIPQPSAPATTLLSKDRHSDVVLLATAVVLARNRFGELVPCRAL
LDSGSQLHLITARFANLLQLKRTKSVASVCGVGDSNVAMDGSSICLTLQAHASEYTTSITAMVATNITGRQPSSNVNTSN
WSIPQNIVLADPAFHRPQRVDLLIGASLFYDLLCVGQIKLMPGLPLLQKTRLGWVVSGGEARNHNSVLIASKTPLDPITD
SCADIKLDSLVRRFWEVERCSDSIVKFSKEDSDCEAHFARHYNRLASGQYTVRLPVKLSCELLGDSYEQARHRFLNLEKK
LSRLPHIKSQYSAFLKEYLELGHMSRVPLNSFHLCRYFLPHHCVLKDDSTTTKLRVVFDGSASTTTGHSLNDILMSGPVI
QPKLVDILLRFRSYPVALTGDICKMYRCVKVPEPDSYLQCILWRNSPDDELEVFRLDTVTYGTKPASFLSVRAMHQLAVD
ERNAFPVGSDVLLRDFYVDDLISGGNSVEEARLVMQETAGILACGKFKLRKWCSSHPMVLDGVTDCDKESLIRFNDGSDI
TKTLGLAWDPASDQLLFSYLALNSASKPSRRSVLSSIARFYDPLGLVGPVITKAKIFLQQLWRHKLDWDESLPSACHTAW
LDICSNFGNGLSSAFPRLSLIPGSKVEVHGFCDASIEAYGACIYIVSRGQHTISRLLCSKSRVAPLKTLTVPKLELCGAE
LLARLMNEVARLGIFAGEFHCWSDSTVALSWINDEPGRFNVFVSNRIATIQDLTSAMEWHYIPTTLNPADILSRGALPSD
LNASLHWFNGPGFLCKPRSQWPVSALPERTSIERRRTVLLVKDAVHDVSMDCKFVNSFGRLQRTFAYVSKFIKKSHGPGI
TLADIRNGTHILLRMIQRTHLSDDINALRNKGMVPSSSSLASLSPFLDEIGLLRVDGRLKNSTLNFDSRHPIILPKVHPV
TRAIIMHFHQRNLHAGPRAVLALVRSQYWPIGGRKTVASVIQRCVICFRARPRLVEHIMADLPKDRVDGYRVFGVTGVDF
CGPFFYKPESRNKAPVKCYVCVFICFATKAIWLELVKDLTTAAFLHALQRFICTRGRPSQIWSDNATNFLGARNQLQELK
RLFLSDTHQKAVKDFCLADSIEWHFIPPRSPHFGGLWEAAVKTAKHHFYRCVGSSVLTYDELRTLVCNIAAVVNSRPLVS
ISEHPSDIDVLTPAHFINGGPPSSFSEPNLTGLNFNRLDAWQRVSYLQQVFWTRWRDEYLNLLQQRAKWRTSKPGLAVGN
IVLVKDENLPSLKWPLARIIELIPGSDGVARVALLKTEAGEIRRATNKLCLLPLKDSVED
>BEL4_Cis#LTR/Pao 77-5492 via tfasty with BEL3_Cis, 3 frameshifts and 3 stopcodons.  [Ciona savignyi]
MDDTITDKIXLAVIDEMNVTVRRHVNLNRKXIAQEAKFXYSIEKVQESVIVSDEHEPIQRAVTNLFKXKRNFRILMTDLE
NEGDPSMFSKWSEKAGRMQSLFNETRDLAQNAIDKRRQTELCDKATRSSPASYALPIKLEVFTGNPLHFPSWNTAFDALV
DSNTNTCAAQKLNLLQQYLSGDPRSVVEGYVLLQSEEAYAQARKILKERYGNDSLVSKSFTDKLNAWPKVNVNDAKGLRR
FSDFLNQIVAAKSQITELGVLDFSNESTKIVARLPPFIINKWRDIVLAYKLSEHGTYPPFEKLAEFVSLQSERENIPELQ
XIGLTSDRRGNLQSKPTTPXYNASSEPWRYQQQVNRSSPNLNCTYCKSYNHGLNECNIFMKLNLCDRKDFLRINNLCYGC
GSSYTHIARECTHRATCKICKRSHLTSLHVYWTPQXYCNRLKSTPTDITRRQESSMIVPVWVRDISQPQYSILCYSILDG
QSNTTFISEEICRRLNKNGTPTHLDLTTMAGRGQIARSRRIXNIEVLSYDRKVKFKIDQSYTCPEISXDRSQIPVPSHAE
KWSHLKQIAKFILPLQANAPIGMLIGTNVPGAIRPREIVAGGENEPYGQKSALGWGIVGSCVPGSDKKNLHRCYATDNSA
RLAIRLNEGSKTKEIISPSRLRRWMETEFVEQRCTDTKRYSQHDRIFIKSISTNITKREDGHYEMPLPLIYQDITMTKNR
PLALKRLWQQKRRFIKxPQYAKDYIAFHDKTSLKTXLRSFKNWINYIPHTGIYNQHKPGKIRVVFDCAARFGGLCLNDVL
LQGPDLMNDLVGILCRFRRHDIAVTADIQGMFHQFFVEAKYRDLLRFLWWEDGNIDNPITEYRMKVHIFGAVSSPACANF
GLRRAADDGELKYRKDAADFVRNDFYVDDGITSVSDRATAISLIKRSKSLCAEAGLRLHKFTSNDRIVLDSIPEEDRANS
VQRIDIYKNPLPVERILGIYWCIENDSFQFRLIMKDVPLTCRGILSTISSVYDPLSFIGPVMLEGKLVLQQLCRDKADWD
DILPSDLQVRWEKWRTEMQSLEQIQIKRVFHPKGFGKVQKLEMHHFSDASNVGCGQCSYVRLVNENHDVCCALVMGKSRV
APLKPVTIPRLELVAAVLXAKVSKYLGEHLPWEKRKDYFWTDSKVVLGYLSNDAKKFEVFVANRKQAIREITDKRSWNYI
PSKQNTSDCASRGLRPSQLTSDxTWLRAPSFLWKGELVKFDVGVDDDTLTNQQIATESKNSVVLITDGRDVDLDLEERLF
HLSTWYRAKRAIANVLLFKHKLQRTLEIPFFTRTLLLEAEALILKNLQCHSFSNDITIVSGISTERDLDRHTSKLRKHQL
KKSSSLFQLDPFLDQHGVLRXGXRLGYTNINDKLKHPIIIPRNTHITELVIRHCHEKVHHMGRTSTHNYVRQSGFWIVNG
SSAVAHYISKCVECRRLRGSLQTQKMANLPGDXLYQGPPFTYCGVDYFGPFLIKDKRSIXKSYGVLFTCMSSRAIHIETA
ISMDTSSCINALRRFLARRGPVVQIRCDCGTNLVGANDELTANCIINQQELRQFLLRQECDMVEFNFNAPHASHMGGVWE
RQIRTVRSVLGTLLFQYGQQLDDETFRTFMTEVENIVNSXPLTIASMTDAGCPEPLTPNHILTMKKRPLLSPPGAFEKND
LYVKRRWRSVQYLTDQFWTRWRKEFXHTLQPRTKRQREQTKKQVGDVVIMKNDDSPRNRWPLARILEXYASSDGLVRKVK
VLVGxHDRDDLGRRINAPSVMLRPIHKLVLLCXADTGDSRTGSQD
>BEL12_AG#LTR/Pao 582-5762 [Anopheles genus]
MPAADKRVKMFNLKRVEIMNTLQDFEEFTKSFDATIDAYQIPSRLEQLEELVSEFTELRKAFNETVDDSEAFDIMQKDRR
EFNKRSHEVRAFLLKNSSHSGASSGLNTTQVNTTISAGTQNHLRLPKVDLPSFDGEITKWLTFKDRFSSMVHDSTEMPEV
LKLQYLLSALKGDAAHQFEHMQITADNYYVTWEALLKRYDNSKVLKREYFKAFYSLEKMKTDSTEELARIVNEANRLVRG
LERLNEPVDKWDTPLTSLLFYKLDSKTLVAWEQYSVDFKTDEFTNLVEFLEQRVNILKSSAQNICNQYSANSIMVTGRQA
RRDGRNVALPVQQTNNTFKGYLKCPLCNEQHPLHVCERFERASVINREEIVRKHGLCFNCLRKGHSARECRSTYVCQQCK
RKHHSKLCKIGRLSEVEVVPSTSRLTATAQANCSKKTVILSTAQIIILDVNDQPYKVRALLDNGSQLNFITERVAQELRL
KRARVSEQIAGVGGAIMRVAGSVVGTIRSLTTEYTTCLEFLILPKIATDLPSETMDVRGWKLPKDVRLADPTFHERGSID
MLIGADTFVEMIKAKKIKLDHELPTLLETELGWIVSGAYKHNNLNQSMACTIVSQGGENDIASLMNTFFNIEEVQDQNLW
NVEERECEDHFQATTRRDENGRYVVRLPLKAERELGESKEVALRRLIGLERRFEREPKVKEAYEAFMQEYITLGHMSVRE
NENSSDGYYMPHHAVFKQDSTTTKCRVVFDGSCKTSNGRSLNDILKVGPTIQQDTTDILLRWRRRAIAVVGDVEKMYRQV
WVHEEDRKFQRILWRSHSSEKIKTYELNTITYGTASAPFLAIRTLNQVLEDNKEKYPLAASRINDFYVDDFISGADSENE
AKQLCEETKAALAMGGFPLRKWASNCPHILPSETEIDNIQRVIELKSREGAVSTLGLVWNPILDTLGVKISEPETCEIYT
KRSIIRTIAKIYDPLGIVDTVKAKAKQFMQRVWSLKKENGDSYGWDEEIPQQMRQEWEVFERQLTHLQEVQVPRCVTIVG
ARNIQIHGFCDASEEGYGACVYVRSTNGEEIVSRLFVSKSKVTPLATKHTIARLELCAAHLLGKLLVKLKRATEDPYETF
CWTDSSTVIYWLKSSPSRWKTFVANRVSQIQNATKEFEWRHVPGIHNPADAVSRGRNPAEVVEDKLWWHGPDWLVKDPEH
WPKNIESGNTCETAKEEKQTKTTLTCMVKEESFINKLCERVGSFTKLKRIVAYCHRFFDRKRIHRKSYFELRELKRAEKT
IIRLVQNEVYATEYECIKQGQQVVRKSPLRVIRPILDKDNVMRVGGRLSNADIKDEQKHPVIIPGKHRIAELIADKYHKI
LRHAGAQLMINTMQLRFWIVGARNVAKRTVFNCVKCTRCRPKLIQQPMADLPEQRVRQARPFSISGVDYAGPIMVKGTHR
RAVPTKGYISIFVCFVTKAVHIELVSNLTSSAFLAALRRFVARRGHVTELHSDNGTNFRGANNKLRELYKLLNSDTHQDE
VVGWCAERDMKWKFTPPAAPHFGGLWEAAVKSMKFHLKRVLGTGHLTFEDLSTLLAEIEACLNSRPITAISEDPNDMEAL
TPGHFLVGNHLQTVADVDIADVPTNRLNHWRLIQKHMQHIWNRWHREYLSTLQKRAKWNKNAISIEPGRLVILQEDNVAV
SKWPMARVVDLHPGKDGVTRVVTLKCANGKEIRRPIHRIAPLPIES
>BEL10_AG#LTR/Pao 451-5691 [Anopheles genus]
MLFCHTTVCRRIVVKMATKKSNYFVENKNGACRLCTEPNGDSPFVRCEECDRYFHLACAKLSAVPTAEEEWLCIKCQDIK
IQYQQEEKKSTPDQAILELAMVLQNNSLEASRHIKKTTLVNLPEFDGKPQDWPHFKKTFEDTTIEAGFSKLENLNRLQRF
VKGEAEKAVRALLLDPQNVPAIMGRLEEQFGRADQVYKELLKDVVKIKVEGQMKIMELSDALDNLVTNIKILGKRSYLND
PRLIDELLAKLSIDKQLNWAQHKASLEAANSEITLDQFNDWMRQISKALRSLPKRTDRPQNKVNVHKYHNHKPPRNSQQM
NIAQNLHTVCRLCKGQHTLPECEIFLQKNISDRIAFTTQHHLCFTCLLSSEHVQRNCPLSKVCSVQGCIRRHHPLLHEVP
QPIYYHYNDVRVYYQIVPITVRNGSVAMKTFAFLDAGSSLTLMEEDLANKLGLQGRQDPLTMTWTQNLTVEQDTSRRVQL
TIVNDQGKEFLLKEVRTVKNLQLPQQTIDTNRLLALYPHLKGIKIKSFTNAYPTILIGLSHSHLIMPLDRRMGRPEEPMA
IKTKLGWIIFGNEYTQPATRSDHFMVHKNEEIMNRMIQQYFSTEDFGVKVTKPLVPKEIEQANKILEKTLEKKDGYYQVG
LLWKPEVAHFPNSYPNALKRLVSLEKQLNKNRELQVWAKNTFADYIQKGYLRKLTPSQVAIATPKTFYLPHFVVVNRNKP
IPKPRLVFDAAAEVNHISLNSQLLSGPDEMASLFGVLLRFREGNICVTGDIQEMFHRVRIREEDQDSQRILWRDCENRCP
DVYVMQVMTFGATCSPACAQVVKNTNAAAHAETHPLAVDPIVRQHYVDDYLDSFFTMEDAIETVRQVIEVHKAADFHIRN
FTSNRGELLKTIPQDRVQQKTTSVQIEEKGQDYEKILGVHWNPTIDYFGFQVKMNKVTKDRPTMREVLSFVMSVYDPLGL
ISHVTIAGRILMRELHVITKDWDSTIPDELQEKWEECLRVVKSAEKIRIPRQLVITLNDPLELHTFVDASENAFAACVYA
RTVTKEGTVFINLVAGKARVAPINPLSIPRLELQAAVLGVRLTESIRKELRLFVKHITYWSDSEVVLSWLKNRRKYAQFV
AHRVGEILESSRADQWRWVPSRENPADIATKPYPNDWIWVNGPSFLRNNESDWPHKEIVETNEECRVVAVHQHAETAIPV
ENYSSWPRLLKHLTILKKFADFIRNRSAFTRSIQPNDVQLVRNGMYRSAQWEGFPEEMATLTKGQPVPKQSPLNKLSPFL
DSDGIMRSRGRLENISTLPQSTRTPIILPQKPRLVKLLVRNFHERYLHQADNVVIGAIRQEYWIVNLRAVLKNIKKCCQK
CILKTAAPVAPFMAPLPEFRAHPYTPPFYNTGVDYFGPIEVQVKRSLEKRWGAIFSCMNTRAVHIELAEKLDTDSFMVCL
KNFQNRRGKICNMYSDNGKNFVGAERELRELVTEIDKRMGHESALKYEIKWHFNPPSAPHFGGVWERQIQNIKKGLRHMF
SEWSHRHPTPETLRATLIEIEAMLNSRPLTHIPLENEEDEILTPFHFLIGRNGSHIPPVVNETSAANRQQYKLTQHYSKI
FWDRWKKEYLPTLIRRNKWTNHVEPIKVGDIVVLFDDNAPPGKWIKGRIVKANMAPDGQVRSVEVKVGENILKRPAVRVA
VLNVEQKEHLLLHTTSQQHQGTNRIRPLQPNNDNNETKPPRKKTKIAPCHWAKQLLENNPPSTSTN
>BEL-230_AA#LTR/Pao 49-5244  [Aedes aegypti]
MDSLVRKRTALMGRLAGIRSRVSAMDPAMARSDDLDAEMECLKEWWLDYRKLQEGILDLCEDDDLLEDIVKIGNKADQEH
NSVKAMITQFQRVVQHREHPIVAASTSTVSQAPEPNATTVGLPELNLPKGILPTFSGDYGEWTSFYDLFTSSVHNNPRLT
DAQRLLYLKTYTSGAAAALLRHVKVEDRAYQGALEALRKRFDRKDQIVSHQIQRYLDIPTTNVATAANLRRAYSTADDVV
RALKASEREERDCWLIHLLLAKLDPETRQLWANKTSITDVSADPSTINDFLEFLDQRAYTMESAHRPSSHVSGKVPPKTT
SFRQSSSFIATNEPSTTNCVLCKERAHLLYMCRRFQNLQPSERLQLAYQHGLCLNCLREGHGRNSCTSIKCKKCSQQHHT
LLHDASHRFHERTHQTPVRTINNLSYNNAYTSVFLATAVVHIIDAQGKPHAARALLDSASQACFITTALKSRLGLRSEQI
DIPLQGISGLSTRITEAVTIEMRSRTSKYRQQLQCAVLYKISDQIPQKPVDISEWDLPSSKQLADTGFNIPSNVDLLIGA
GVFYKLLGNERISLGETRPILQSTQLGWVVAGIYDTETSANTSSTSSAALCFTTSLHQEETNELNNLVARFWELEDLQPT
KHLTEEERLCEEHYTQTTVRDSSGKYIVKLPFRKDPAVIGETAYSALHQFNAVSRKLTRNPRLSELYHDYINEFIEAGYI
SKAEPASPPDRIIYLPHHGVLKEQSTTTKLRVVFNASAKSSNGVSLNDLLMVGPVVQTNLYAILLNFRTPKIAITGDIER
MYLQINVSDADRHRIRMLWQERDQHLAEYTLNTVTFGMACAPFLATRTLKQLGDDDGHLYPLAQEAMEDFYVDDCLTGAS
SIEEAIEKRRQITELLQRGGFSIRKWATNEPAVLHDIPPPDRAVSLSQELDPDASLKTLGIRWHFGEDVFTFSSTCDKQK
TVSCKRDILSTIAKIFDPLGLIGPAIIPAKAFMQELWQLQIDWSDPLPESMKQRWQNYVENLHDVESIKIPRRCMNIDHP
MRLLLHGYCDASNIAYGAVLYLRAIDKAGNVSSRLLCSKSKVVPINRPTIPRLELCAAVLLARLIDTVKAALRIPIHQTV
AWSDSTTTLAWIAGSPTRWKTFVSNRVAEINASLPAVNWRHIPGTDNPADLLSRGLTPSALESSQLWWEGPQWNDASCME
STGIQLTTEEEAIVQKEMRKQDSVQTFVVITNEVIDQLMHRQSSFIKLVRIVAWVNRFIKNCQRSDEAPSVGPLSVEEHE
TAKAILVRYSQQLAYPAEIQALAQQKELPKHSKLLSLSPFLDDGLLRVGGRLARSKLAYDIKHPLILSPTSRLAQLIFHH
EHLQNHHLGAQSLLATVRRTYWIPHGRNLARNTVWKCVPCFKFNPKRGLQQQIMGQLPPERTQPVPPFYISGVDYGGPIT
LVQRRGPGSPTTKGYIAMFVCFVTRAVHIEAVSKLSSKAFLAALRRFVARRGHCGHLYSDNGTNFVGAAKEMIQWYRTIQ
SPDHNNSVADMLARGGTQWHFIPPGSPHLGGLWEAAIKSAKHHLNIVTRNVRLTFEEFSTLLTEIEGILNSRPISPASSD
PNDVQPLTPGHFLIGRPLTTPNQQQIIPSSDETYDIRFKYIHELRQHFWDRWSREYVPELQIKGKWHQSTKGLQVGDLVL
LRHQRLAPTQWALGRVVELKPSSDGHPRLVKLKVKDGELLQSIHNLHKLPMN
>GB:CAA31653 polyprotein (Ty1_Copia-element) [Arabidopsis thaliana]
MANDPNQNTILKTSFQVFNENSDFSLWKTCMKAHLGLAGLKGIIDDFDLTMTVPIPKSEGKKIEDGDEQGDSSQTKIVPD
LVKIEKSENAMNIIIAHVGDAVLRKIDHCKSAAEMWETLNKQYMETSLPNRIYVQLKFYSFKMNDTKSINENVNEFLKIV
AELSSLEINVVEEVRAILFLNRLSSRYSQLKHTLKYGNKALSLKDVISAARSLERELNEQKETDKNTSTVLYTNERSRPQ
TRNQNHNKGGQGRGRSKSNSNAKLTCWYCKKEGHVKKDYFARKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWVL
DSGCTSHMSARRDWFCSFREDGGPTILLGDDHSVKSQGQGSIKIETHGGTIIGLENVKYVPELRRNLISTGTLDKRGYKH
EGGDGKVRYFKNQKTALRGELVNGLYILDGNTVLSETCVAEGSKGKTELWHSRLGHIGLNNMKVLAGKGLVSKEEIRVLD
FCENCVMGKAKKVSFNVGKHNSEDVLRYVHADLWGSTNVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCEWKE
LVENQQNKKVKCLRTDNGLEFCNLKFDAYCKEHGIERHKTCTYTPQQNGVAERMNRTIMEKVRCMLNESGLGEEFWAEAA
ATAAYLINRSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPAGTKGYKIWLLEEHKCV
ISRNVLFHEESVYKDTMKKERVVESEAEPASHSKSTLIKVKTPGNLNSGEVIQVSDEEESDESVEEEQEPETQVELPETQ
TTSSLANYQLARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEMDSLIKNGTWVL
VDKPQNRKIIGCRWLFKLKSGSPGVEPVRYKAQLVAKGYTHREGVDYQEIFALVVKHTSIRILMSVVVDQDLELEQMDVK
TAFLHGELEEELYMEQPEGCISEDGENKVCLLKKSLYGLKQSPRQWNKRFNRFMIDQNFIRSEHDACVYVKQVSEQEHLY
LLLYVDDMLIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDMKNGVLRMSQASYIHNVVQRFNMAEAKVTRSP
IGAHFKLAAVRDDDECIDNNAVPYASAVGSIMYAMIGIRPDLAYVICLVSRYMARPGSIHWEAVKWILRYMRGSQDLNLV
FTKEKEFRVTGYCDSDYAADLDRRRSVSGYVFTVGGNTVSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGL
EQDKVTLWCDS
>GB:S31262 TyB protein (Ty1_Copia-element) [Saccharomyces cerevisiae]
KIAACIANLFSIAQLTAKRNQIGNLGLTRPISQKPIIYKVHRDNNHLSPVQNEQKSWNKTQKRSNKVYNSKKLVIIDTGS
GVNITNDKTLLHNYEDSNRSTRFFGIGKNSSVSLKGYGYIKIKNGHNNTDNKCLLTYYVPEEESTIISCYDLAKKTKMVL
SRKYTRLGNKIIKIKTKIVNGVIHVKMNELIERPSDDSKINAIKPTSSPGFKLNKRSITLEDAHKRMGHTGIQQIENSIK
HNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTDHEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYC
MTSTHFNKNAETILAQVRKNIQYVEAQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTI
ITDATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKSTGKLPLKAISRQPVTVRLMSFLPFGEKGIIWNHNHKKLKPSGLP
SIILCKDPNSYGYKFFIPSKNKIVTSDNYTIPNYTMDGRVRNTQNINKSHQFSSDNDDEEDQIETVTNLCEALENYEDDN
KPITRLEDLFTEEELSQIDSNSKYPSPSNNLEGDLDYVFSDVEESGDYDVESELSTTNNSISTDKNKILSNKDFNSELAS
TEISISGIDKKGLINTSHIDEDKYDEKVHRIPSIIQEKLVGRKNTIKINDENKISDRIRSKNIGSILNTGLSRCVDITDE
SITNKDESMHNAKPELIQEQLKKTNHETSFPKEGSIGTNVKFRNTNNEISLKTGDTSLPIKTLESINNHHSNDYSTNKVE
KFEKENHHPPPIEDIVDMSDQTDMESNCQDGNNLKELKVTDKNVPTDNGTNVSPRLEQNIEASGSPVQTVNKSAFLNKEF
SSLNMKRKRKRHDKNNSLTSYELERDKKRSKKNRVKLIPDNMETVSAPKIRAIYYNEAISKNPDLKEKHEYKQAYHKELQ
NLKDMKVFDVDVKYSRSEIPDNLIVPTNTIFTKKRNGIYKARIVCRGDTQSPDTYSVITTESLNHNHIKIFLMIANNRNM
FMKTLDINHAFLYAKLEEEIYIPHPHDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLYQTEDKNLMI
AVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKK
IRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQ
YLVRYKDIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADS
ETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSA
SDFKRFIQVLKNKITSQDILASTDY
>GB:CAA26447 ORF1 (Ty1_Copia-element) [Drosophila melanogaster]
MDKAKRNIKPFDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEYLSDSFLNFATSDITARQI
LENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIE
TLSEENLTLAFVKNRLLDQEIKIKNDHNDTNKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGH
IKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDHLVNDESLYTDSVEVVPPLKIAV
AKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNVPVI
NFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRP
LFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEM
RQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMW
HNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVF
LKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESN
KYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPEISYNEEDNSLNKVV
LNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVA
RGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYG
LKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEI
KHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLT
TAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKVQQGIYSKCLILISFV
GIQRDRTQ
>GB:AAC13648 gag protein (LINE-element) [Bombyx mori]
MSEEERELFSPRVSLARSPPRGPTAPLPAPMPPPAPRGVRAGAAMSAKGRRTGLHIPVASGLSSSAPVTPVDPVAGVPSF
PIPVASGAPTGPLDVAAQGRLELLERANRAVRGIMSVATAASKLNKSEVNLISELGRDILAVVGALGIQLSDKELVVERL
RSAEASARRDSVAPSMAAGAAAGSGTGPATFATVLRTGPGGVPRSIGASQGPSLAFYPSEGNAELKTAEDTKKEVKKAID
PKSMAIGIQSVRKVGNAGVVVQTTSPGAAVKLRNAAPPSLRVTEPRRRQPLVAVNGVEGDPSFEEVIECLASQNLDPEEW
PLTRVRAELTGAFKKGRRQSNNTTVVFNASPRIRDALVKIGRVYVGWVACEVTDFVRVTCCNKCQQYGHPEKFCRAKEAT
CGRCGEDGHRMEACKAASACCATCRRFRREAMHPTASRDCPARRHAEERFLNQVEYGY
>GB:AAC24821 pol polyprotein (Ty1_Copia-element) [Candida albicans]
KTGAASINCVMNIHNCSKTTFPVENSHSLNASLNVMNFKGLRFNKYLVYDTGATISVVNNKDILSNVKDATIEVSVADGA
TLEADCIGDLIIRVGIVSITLENTLYLPESSFNLVSLKQIEERGFNVLITKESVIVFNQNVAPTIIASRKNAADLYMGPQ
FSEESLECDFDYDGLADMLSNANQDDKDKSSMNEMSEYQEHDYSSRALINSLTEVDVLDVEISPYGVEQLLPTGDKNDIY
NFHLMSNHMSIEKILLLQKYQGLVLHTSKESLQKIADCKVCLLSNAKQRSHNHHSERKASRRHERLHCDTLGPFRSENNK
WYLTSVIDEHTGYIEGIITKDRKVKDLLIQRLKIWNNRFNDKVAYFRSDNAPEFPQPSDLAEFGIWRETIAAYSPELNGL
AEVVNKLILQQIYRIVVTLGPQILKLIYYVIQYSITMINHTPRRSLKGQTPYGCYYQLSEGNFYRFPFAIDCVVTFSNAI
EKNRYGVTSTKGAPSSIMGAVIGYASDCFSYYVLLKNMRCDIILSPNVRILRSYEVINSYLKNLSTTPMSHIVPMAEGIQ
GRQSGAQYEVRGTYVESEYDNTNDVMHMPKESYSVQPASFTLTTGNSSNEYVINDDPVQITIENPDDFSNPLQLTEESHD
MVSEVKSDENPKPSLHELTPGDNPVSKPPQLGTETSVIGKSKEPITNHTKDAPSIQGRDHKRSESTAQVGLSHQPQTGTP
ASEESKLSGTDHFGVDVVKETVSEDWHTSDYPETSAEDEQQNPSLSANKNRVTEKIDEGENISFPGGDDDSVVINSNVEQ
SNVETEDAGNSPIQDEVSQEGRILNEQTDIVDTVAKVIENEKISPINSLDDHTELATDSGNDSNSTESDIQSKNEISPVI
NEKNTEIIQKHIESILADKRLDEFETYNVDEIENVINDDDIAEANPLPDENNDVQMNESFDNNHSMSRAKKKYTFEKEVN
EKIAGTKHSLDTTDPREAIRVLNTGETKRIEPKKREVPITVKLNKRSQYKSPYVTRSGRTVINPKRYLHAVVNKIDYNDP
GWIKSMNAELEKFRSKDVYEEVPIPTGVKPISMGWVHTEKIDSLKGVVRKSRCVVHGNRQKEKLDYDPFSVSSPVIDLVT
IRLLTIIGCELGMTIQHLDVESAYLNASITHSNPIYVFPPKSVPLKKNHCWLLKRSVYGLKQSGFEWYHTIKRVLEDIGF
NQVLHNDGLFHIEYEEGSVIYLGLYVDDILMVGSSQKVIDNFVDQLRDHFEVKVFGEISNYLGIEFRKTESGYILSQEKF
LKKLLKDFKLDDSYGKNIPWIPNDKYEKVAIIRENVNPENDFEKVPNETLLDPDAKKLYQSGVGSLLWAATNTRPDISVV
VNSLGSKSANPNVHDYEKLIYCLRYIKNSMGYHIEYKRNRLNIPPKSFVIECFSDASFAPGLDRKSISGTLIYVNGNLVQ
WATKKQTVIAQSSAACEMLALNYTMLKAIEIKNNLMDLGFEVGKIHCHQDNQAVIKVLRNNYCHPHRPIDICYKFLRQLI
NDKVFSISYVKTNDNYADCMTKCLSRAKFKAFVEGMIKRLDLEDNQTSIQNAITAE
>GB:AAA92248 ORF A (Gypsy_Ty3-element) [Autographa californica nucleopolyhedrovirus]
MPHDPDVIFKALRLVPEFNGNPNILTRFINICDKLVEQYASAEPGSELGNLCLLNGILNKVTGTAASTINANGIPETWVG
IRSSLINNFSDQRDETALYNDLSLASQGNKTPQEFYEQCQTLFSTIMTYVTLHETLPTTIEAKRALYKKVTVQAFVRGLK
EPLGSRIRCMRPETIEKALEYVQEELNVIYLQQRNESSRAHSSPKMLPIPQQSPVTPFNTLGIHRPPVPNWPVPMGQRGN
QPPPQPFKFNVPNQYHNRMPTKTQQMLRAPPPNYHPQSNVFRLPPRNPPPNQIVKPMSGVQHFVPKTLPVMTGHDWRKSG
NPPPNNYFKTRELNVNEFYSSDDSYNSVDYYSEPGCDYYTDYYNNPYDYDTNATCYDLPYDASETEAQPGPSHVHESQDF
QSTKPSNEQG
>Helitron-5_DRh#RC/Helitron 287-4563 via genewise with Helitron-2_AC_hel, 2 introns (770:809, 1309:1369) [] [Drosophila rhopaloa]
AIHSQNVRNNRTQEVRAEINASARARIAQLRAAQRPPQARQNVSRRRPAANENLNRAAFAYNSETPYKDHSCVVIGSLSV
VCQHCNALKFRLETPGLCCAGGKIKLPVLAHPPEPLYSLLYGNSAQSNSFLKLAQKYNGCFQMTSFGAEVVHQPGYNPSY
KIQGQIHHRAGALLPPPNKDHKFLQIYFIGDSEDELNQRCAIFTATKREIIQQLRNLLHERNELVRLFKTALDTMHSDDH
KIIISADKRPTGSHARQFNAPTINEVAVVIVGENVESRDIVLKRRDDGQLQRVYETHRSYDALQYPLMFCRGEDGYHFNI
KMVNPTTGEETNKKVSSMNFYAYRLMIRLDVDNHLLRYRRLFQQYCVDMYVKVETERLNFIRFNQSKLRSDEYIHLRDAI
ATEGHAANIGCLTILPATYVGSPRHMHEYAQDAMTYVRNYGRPDLFITFTCNPKWPEITNLLLPGQTSSDRPDITARVFK
QKITVLMNYIVKQKVFGAVRCWMYSVEWQKRGLPHAHILLWMFDKIRPDQIDSIISAEIPDKQTDPELHSIVTTSMIHGP
CGVHNPESVCMDNGNCTKRFPRPLTAETISGHDGYPLYRRRSPDDNGKWIEVMVKRNETNVTVIVDNRWIVPYCPLLSKT
FSTHCNVEYCNSIKSIKYVCKYVNKGSDMAVFGIADPNANDEVTKFQLGRYVSCNEAIWRLFSFPIHERHPTVVHLSVHL
ENGQRVYFTDANAAQRAERPPATTLTNFFSTCESDPFARTLLEEEVHPRQDECFYLRLLLVNIRGPTSFESLRTVDGVLC
ASFREACQRFNLLENDAHWDSTLADAIVSASTNRIQSLFAIIIATCHPSNPTALWDNYKDHMVRRTTDNFTITEEMRNEA
LIQIEDICMLMCGSLLATLGMPAPNRSMHDAFNREFQREHHFDQTNLAERVRTNVPLLNAEQKNVYDSIMKVVDDETGGL
YFLDAPGGTGKTFVISLILATIRSRSQIALAVASSGIAATLLEGGRTAHSALKLPMNLLTVDQPTCTMSKNSATAKLMRE
CKIIIWDECTMAHKRALEAVDRTMKDLRGDSKLFGGALILLSGDFRQTLPVIPKSTAADEVNACLKSSSLWRYVKKFKLS
TNMRVALQNDPSAAEFSRQLLALGNGEIPVDVxTGLISFPANFCEFTSSKEELITKVFPDIAQNYKNLDWISERAILAAK
NKDVDSLNFVIQSQIAGELHSYRSVDSVTDEDEATNYPTEFLNSLDVPGTPPHNLQLKVGSIIIMLRNLNHPRLCNGTRL
SVKKLMNNVIHATIIKGKFKGEEVLIPRIPIIPTDLPFQFKRIQFPVRLAFAMTINKSQGQSLDVCGINLEYQCFSHGQL
YVARSRVGKPSSLFIFAPDNKTKNIVYHIALH
>Helitron-3_ZM#RC/Helitron 13818-18081 via tfasty with Helitron4_OS_hel, 1 frameshift and 4 stopcodons [Zea mays]
HLLSTVADCGYCKAKKFQYEPPGFCCRNGQIDLAPFETPPQLRRLWECSDADARHFRDNIRFFNGHFSFTSLYCCLDSMT
TNMDCGIYTFRAHGMMYHNVRSFGREVGAEHKHLELYFYDDDPSLEHRYRKCRQEQFEKDKAVIKQLVEILKGNPYSEHL
RSMGNVDNIEDYHIALNLDQTLNQKLYNVPITSEVAAVWIEGSERRGQFSNSVMLHGKDRSSHGIRSYHGCYDALSYPLF
FPKGELGWHANIPKSNVSMDEVDAYRDQHRRSDANNDDTGxLFLCDSYIILCxICFxQHxLINLAVAERPSHLCVSVRDY
YCYRFQIRPSIFNPILHGKRLFQQFAVDTYIKIESSRLDFIRKNQDRLRADLYKGLVDSLHEGENRADKIGKRTVLSTSF
IGGPRDMRRRYMDAMALVRKFGKPDIFLTMTCNPNWDEITRELLPMQSPQDRPDLVVRIFRAKLEELKKRLTKHHILGKI
RAYVYVVEFQKRGLPHVHFLLIMQRKYKLTCPDQYDHLISAEIPDKKKYPELYKMVIKHMMHGPCGLLNPKCPCTKGRAS
CKNHYPRAFSNATSQGKDSYPIYRRRDDGRKETVRGCELDNRWVVPYNPYLLRLFNCHINVEACGSIKAVKYLFKYIYKG
HDRASVAVTDANKADGDVDEIKQYRDARWVTPPEALWRIFSFDLSQNSPPVMQLQLHLENMHMVSFHERAKVNHVVQRPG
ADRSMLTAYFEANRLHEEARGILYRDFPEWYTLQQGKVWQRRKRNTGGQVGRIVSAHPAEGERFYLRLLLNHVTGATSYA
DLRTVDGDTLPSFREAAQRRGLLEADDTIDECLNEAAIYQMPSALRRLFATILVYCEPNDVAELWQRHLDSMSEDYHRST
QSKTHVQQMVLIDIRNILQSMGKDIKTFPLPAIIDKYDDSHGTDREIYEEESIEPTAEDVAMKETLNEEQRFAYDKILSV
VDTNNGGVFFVDGPGGTGKTYLYKALLAALRSQDKIAVATATSGVAASILPGGRTAHSRFKIPLTIDDGAVCSFTKQSGT
AKLLQKASLIIWDEASMTKRQAIEALDNSMRDIMGRPGLPFGGRTVVFGGDFRQVLPVVRKGSRAQIVAASLRSSYLWES
MCHLKLVQNMRAQSDPWFAEYLLRVGGGTEEANNDGDVRLPDEVCVPYTGNDRDLDRLIDDIYPNLNANMSNTSYITSRA
ILSTRNDWVDMINMRMIDRFQGEQMMYHSFDTAVDDPNNYYPSEFLNTLTPNGLPPHVLKLKVGCPIMLLRNIDPANGLC
NGTRLVVRGFQKNSIDAEIVLGQHAGMRIFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTVNKAQGQTIPNVGVYLPE
PVFSHGQLYVALSRATARSKVKILAIPVHDEKKKKKGVERNSAINGATYTKNIVYKEVLTP
>Helitron-5_NVi_hel#RC/Helitron 1357-5607 [Nasonia vitripennis]
MPRRRVVRTQEEEEIFQENRRERRAESQRRRRQAERNAIIDESRNEPVLRDHLGPMNISCTHCRAQHFIGEKVSNKGFSF
NDCCSHGAVHLEPTPVFPTVLNDLFNGSHAKSNDFFQHIRVYNNSLSFASFNANLVNFASRRSGPYCFKIQGQIYYQINT
ALYPEDNDSPSYGQLFIIDPLEAIYLRMEQNSDLQYETLEILDKVIRENNIFAKSYEMMKQEINNQQTLINSDEPVPELQ
LLFALKPGTDARRYNFQRTNEVAAVFSTTADGDIPESYVTIRNKNTKTLQYVSTMDPNVEPWIYPLFYPYGNQGWHQNLQ
CINRNNAGGNNRRVTRLAYTRYKIAIRPDEFNPFILGRRLFQQYVVDAYVKIEKDRIMYCKNHQKEIKADTYQGLHDYMQ
NSANDINGQVGKTIILPSTFIGSPRHMQQCYQDAMALINRKGKPDIFLTMTCNPKWPEIVENLLPHQQASDRPDIVARVF
HLKKERLLDFIIKKNFFGEVAAYVYVIEFQKRGLPHMHLLITLAYGSKITTSEIVDKFISAEIPDAQNPTLQEIVLKNMI
HGPCGSWCQVDGKCSKKFPKHFVNETNMDENGYPNYRRRNTGILHKQTNGNEVDNRWVVPYCPILLEKFNCHINVEVVTS
IRSVKYLYKYIYKGHDAATVTIGESNEGTLINHDEIRDFLEARYVGPVEAFYRILSKILQDKSHAIIRLPLHLPYQHTVT
INGKGNITQENLSSSSSMLLDYFKLNLENPEARQYFYADIPSKFVHKKSKIDGLSVSSWQVRKQRFNCIGRMYSISPTQL
ELFHLRLLLLHVKGATSFDYLKTVDGILHPTFTAACLALGLIEDDEEWIRAMEEATVWMMPAQLRRLFVRILIHCQPVHP
EELWDKFKDAMSEDFSRTNELTISHQKAYAHINNLLNMEGRXLSDFPTMEQTVELNISYDETDEATLPQMAELGQQQYEN
LNNEQKEIVDTVLHAVDLNDHDRNNCIYIDGPGGSGKTFIYTTLYNLLSSKNIKVCTMAFTGIAATLLPHGKTVHKTFGL
PVPMYHDSSSSIKAQSKEGLFLKNADVFIWDEAPMAPRYALEIANRTLQHIMNNNLPFGGKIIILGGDFRQLLPIKIRGT
RCETLNLCIKYSELWKYFKKFTLTTNMRVRPNEINFAKYLLEVGNGTINDLHDNIDXPEHCILDANNNIAYYSFGKLIEE
KRFEDMSKCAILSARNIDVDEINKQVTNLLDVTSEHVYTAIDSTENCNNGELDEVLLPEYLNSLNPTSLPPYELRLRKHC
IVMLIRNISINEGLCNGTRLRIIDFSNHLLKCIILTGDKAGRIVFINRITLYCENDYPFTFKRKQFPIKIAFAMTINKSQ
GQTFHKITIDLRANVFNHGQLYVAMSRVRSWDSVKIYLGRQRQGVQVKNYVYKELYL
>GB:CAA04048 Envelope protein ORF1 (Gypsy_Ty3-element) [Drosophila melanogaster]
MENTLLNLLLVLLSCHGAYQSIFIHNFNSTNLLAKVPVGKTLVIGNYKKISHIIDLSEYTNCIEKLYHTIDTLRQDETLT
DSISILNAKLAQTQSKIDALTPFSRHKRGLINGLGSLVKVVTGNMDANDAKNIETEINHLKSQSTTISDNFEIQNSFNDE
VQLRFKNLTRHINNEQNLIKNFFENTQNTIYTKIYNNEEEIKKLQYINRLNYNIDLLVSHLSDIIESTLLAKINVIPKLI
LDKTEITKIKQIFKTQNYTIKSEQHIYNLLKMNALNYQNKIIFSIKIPIFLSCNYEMARLIPLPINSTQFVIAPKYLIYN
NKSNSMFSTMYKCPVIEEQFVCEIDSINNLKNNTCLGHLIQNKTSYCDIKETGLTTDVFEPEKGFILVFNGNNLPIISSN
QTITSINGSAIIKYNNCTLKINEINYDNRAVSTEEHPDFFLPPMRKLIKNATINILTLERLHLDTLTTSNKLLVVAAGNS
RHSTTLYILFTVSLVAVILTWTLRRDTHIFHTGPDHILPIVAPPIPPSMAFAPNWGGRSYRPIGTIHHPSL
>GB:AAA28599 ORF1 (Gypsy_Ty3-element) [Drosophila virilis]
MSWNYREIKVEYNSDDSWEGEINCSVDPTPADTVVTEEMEPAQVQNLIEGAIRQALAQQQNQFQAQITALASQVQSLQVE
APQIVTYEKISVDPNAKCDIPLDIIKSVPDFSGVQDEYVAWRQAAIYAYELFKNYPKSTAHYQAVQFIRNKIKGPAGALL
VSHNTVLNFDAILARLDCTYSDKTSLRLLRQCLELVTQGEMCLMQYYDDVEKKLTLVTNKIVMSHDQEGADLLNREVRDD
ALHAFISGLRKPLRAVVFPAQPKDLPSALALAREAEASIERSMFANSYAKALQDRAQIAESNKNRAQGKQTRFNKDEQNQ
ERNPHFVKRQKGGPQPQAPKDNQTEAPQPMEVDSSSRFRQKPTTVSRQANESNAPKRKNSSDRSTGQRRQRVNNVVQSDS
KEAVTEFEKAAKEAVEELESENEYAPGDDSINFLGNTPGFRTLNDGWLGEL
>GB:CAA35587 ORF2 for putative reverse transcriptase (LINE-element) [Drosophila melanogaster]
MASLRISLWNANGVSRHTQELTQFIYEKNIDVMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHL
NNFDKNYLQSTSIALQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVSPKGKQLYNAL
TKPENKLDYVSPGKPTYWPADPRKIPDLIDFAITKHVPRNMVTAEALADLSSDHSPVFLNMLTRPHIVDPPYRLTNFRTN
WPRYQKYVCSHIELTTALSTKEDIDKSTETLENILVSAAKASTPPVTYAKPNYIKTNREIERLVLDKRRLRRDWQSNRSP
ITKHMLKIATRRLTNALKQEEKNSQRSYIEQLSPTSTKYPLWRAHRNLKTPIAPIMPLRSPSGTWFRSDEERASAFADHL
QNVFRPNPSTNTFILPPLIAANLDPQEPFEFRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAK
LGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNRI
TSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIKLLPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGS
VLGPILYTLYTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTFTLNKQTC
PPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIWTYGSEL
WGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPLARKLIRVCSQSRLH
RNDLPAQQ
>GB:CAA25498 ORF1 (Mariner_Tc1-element) [Caenorhabditis elegans]
MDRNILRSAREDPHRTATDIQMIISSPNEPVPSKRTVRRRLQQAGLHGRKPVKKPFISKKNRMARVAWAKAHLRWGRQEW
AKHIWSDESKFNLFGSDGNSWVRRPVGSRYSPKYQCPTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENIFETTM
RPWALQNVGRGFVFQQDNDPKHTSLHVRSWFQRRHVHLLDWPSQSPDLNPIEHLWEELERRLGGIRASNADAKFNQLENA
WKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY
>GB:AAC16608 transposase (Mariner_Tc1-element) [Drosophila sechellia]
MSSFVPNKEQTLTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL
LDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWI
FFVNPKRKKSYVDPGQPVTSTALPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNTARYQQQLINLNRALQRKRPEYQKR
QHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDE
FYWRGIHKLPERWEKCVASDGKYFE
>GB:CAA23541 IS-2 ORF 2 (ISa-element)  [Escherichia coli]
MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAE
LDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW
AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTI
KRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
>GB:AAD38020 transposase (ISa-element) [Porphyromonas gingivalis]
MSTNISLFAQVIRLLPRPLIKKLSTEFQVDKHSKHFTSWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPS
KSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALYDWAKYTHTKGAVKLHTLLDFK
TLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQIL
VDQRVRLTGVQTQGKYTKPLRHIALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRN
AVEVQIWTALITMLLMVYLKSIAKYRWCLSNLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF
>GB:CAA48047 transposase (ISa-element) [Bacillus stearothermophilus]
MNKHTTLPNLMQKLVSDEEIQLIAEAVGYRDSSRTFTLRELIHFFLLAAMHQWKSFRHGADVGPLYGLPRFHYSTVSKKA
KEVPYDIMKRLLALIISKCNRQTRRSLRFPKPLRVVDSTTVTVGKNRLPWAPYHGERAGVKLHVAYSPEFSLPADVVETT
GLRHDGPVGEQLTNAQQVLVEDRAYFKIERLDRFVEQHQLFVIRMKDNIELHQKKSLNRLSSTSSSVQTDFTCQLGTKQC
RSTKRHRVVIFRDANGRDIRVVTNLFHASAETIADMYQQRWAVEVFFRWVKQYLNVPTLFGTTENAVYNQLFAAFIAYVL
LRWLYDQTKKQTNVSLSFISFVRRFFSGQLPLDWKSGMAAALFEYAQIYGRRMYNFG
>GB:AAC46946 mariner transposase [Chrysoperla plorabunda]
MEKKEFRVLIKYCFLKGKNTVEAKTWLDNEFPDSAPGKSTIIDWYAKFKRGEMSTEDGERSGRPKEVVTDENIKKIHKMI
LNDCKMKLIEIAEALKISKERVGHIIHQYLDMRKLCAKWVPRELTFDQKQQRVDDSERCLQLLTRNTPEFLRRYVTMDET
WLHHYTPESNRQSAEWTATGEPSPKRGKTQKSDCKVMASVFWDAHGIIFIDYLEKGKTINSDYYMALLERLKVEIAAKRP
HMKKKKVLFHQDNAPCHKSLRTMAKIHELGFELLPHPPYSPDLAPSDFFLFSDLKRMLAGKKFGCIEEVIVETEAYFEAK
PKEYYQNGIKKLEGRYNRCIALEGNYVE
>GB:AAA75435 unknown (LINE-element) [Crithidia fasciculata]
MAVMTRGRLVEVPLERVMEQLEELHPQEDPRGYPAAPDTSEVLRAKEQKVRRAIAARMGRGTAPGLDGWTRELLLPLAED
PALLHEITSVVSDIMQGKVAEVVARRLRSSAVTPIPKDEAGTKIRPIVPESAWLKLASLVAMAEIPSSFKETFKGWQYGV
WGDVAKAVAKIRRDSEEHEYLVALDGVNAYNTMSRAHILQAVYAEQRLKPIWGVVKVALGGPGFLGVYRDGCLKGNLWST
KGIRQGMVLGPLLYATGMAAAIGPVRQRIPGVPVTAYIDDITLAASGAEGARAAEAYADALETVGVVTNARKSMVVGPEG
TRVGIGGVDLPVVAEARILGAHFRARGTPEARTIEWLQAAVEKWRPIHQKLRQDIIPKNIAMMMTRISLGSKMTFLLQTH
SPQELETAAKTADDEVEQTLQHLMGQVEITPRARLLAQLPIREGGLGLRRSSEIAKFAQADVGQGEAHQAHTKALDEGIK
HQLQPLLSESEVQILKSNAGMGAGRVLTDSSLRIPDVAATIALRERLLLRVLPEGMQCVCGGDATNYHVHTCSNIPTKPR
TRRHDGVVDELVALARKMGYEPSKEPRADVTSRARPDLYITGSLKPAATDVTITYPGRQARGAHSRCSRPTGIRWGPGRH
GGTCEGWTCSRWSSGRTRRYTRRVRMDTKVDLGRRQRQNTYQLQRGDGTNRGDGVGWERGAVQRSDEPGAGQGVDVGRYG
WVVVEYRTATRKLDHCYLLLVILTTTKDCSLLLVTLKFDIT
>GB:AAC72920 putative gag-related protein (LINE-element) [Lymantria dispar]
MAEKTITIDALLAIPEIKAYIAQHFGAITILPPQPKPARSTAQPLEPELPAVGTAMETEPVLSSSNSSSSSSSESEDSSN
EGSFIEVRSRKRSKRTKNTKEAPSKTPKIKQTDSATTSAAAPLATTATAAPAPPVVSQAALTAAPPPTDSNTVAPPTVKK
SLAPPPLYIRDKDKWLAISAWLNTNRISYKSAKSTPQGIRVDLHSSADHRSVSKMLGNQQIPYHTYTLPEAKLLRAVIRN
VPREIETKEILESLKTQDLPVVEVHRMIRGRGRYPLNMILVCLTNNAEGKGIFKIKTICGLSGVSVEPPHKNGNLAQCHK
CQLYGQSSKNCFARPRCVKCLGDHHTSQCERPKDISLCKEPPACVLCGEYGHPANYRGCPRAPRRLVRQPNTNGKALYYN
KTFVPAPLPTHNAWARPLLNSKEAFPTLPNRQPAAPPATSQLKPPTTGPNQPTGGNPKPPQGAPIPIVVAKSAPPKAPQG
LDPDLALVANFAAQINFTEIREIAAELRRNEGNNLALLNTAIKFSPTLERLGSLKFK
>GB:AAC34906 reverse transcriptase (LINE-element) [Forficula auricularia]
LGPRSINQPRIRTDSPNIVRPSGSTTTMQRCTTSDLTFSQCRFPHCKFRRPSLTGVRVHEQRSHKAFFDRLQAEVIRNQT
SKKKPRWTEEEKNLLALAQANLIIEEETNIIDDLVSKFTYRTKDALKSQIRKPEHKTRVSEFTLAIQAHIDNIMLPAPVP
IATDPLQVSCNFKDRAKDYIDTLEPITSTKFYLDELEALCDNICIWPTRLLITTVESYIRKLFKTTSTLKPAQKLHNPSN
RNLPKRQLRRMEYGKTQKLWKKNPCRAIKTIIDDKDCKSPPEREAMTQYWKTTFSSKKRTCPQYEPRESTKTQLWEPVTI
EELHCCHLEMTTSPGPDGITVRQLYLVPEQLLVRILNLLMACGKMPDSFLESKTTLIPKKPNSTEPGDFRPITVQSVLVR
QLNKILAARVAQHIPLDERQRGFRPVDGVAHNIFELDMILRCHRSEFRDLRLASLDIAKAFDSITHNTIEDTMEVRGFPK
PMINYIMACYRRSKTRFTFNGWISDTVKPTCGVKQGDPLSPILFNLVMDRMIRKLPKEVGVNVGSKHYNGLTFADDLLLF
ATTPEGLQSSIDIVHLFLLECGLLINKQKSFVLTVKAYPKLKKTAVIVTEKYMLDRHILPAIDREKLFHYLGVPFTAEGR
CRDDTIAHLKRKIDVLTKAPLKPQQRLFALRVVILPSCYHILTLGGSNLSLLKKIDLMVRAAGRKWCCLPKDTPNAYFHA
SSRDGGLGLPSMRWLIPLHRYLRLLRYEGRNPEDTNVYLTTEINRAKIRLSDNGSNIDCQAKLWQFWADRLYKSVDGSAL
IESSKVPQQHRWATGGSRFLTGRDFINSIKLRINTLPTLSRTLRGREGNRMCRGGCYNVETLHHVLQVCHRTNGTRVKRH
NAIRQYIARGAAVKFDTVEREPRIKSASGAVNIPDLVACNSDEVVVIDTQIVWDQANLDEAHQAKAEKYAHLSDILKHKY
SRDRVKFTSVTLSFRGLWSKQSLKELTDLGIVNSKDIQIISTRAIIGGIASFRMFNSTTSVNSVNSFLEIALG
>GB:AAD19347 putative nucleic acid binding protein (LINE-element) [Fugu rubripes]
MASPSVSPGVFVCSACEMFSYSSASFSEGNRCRKCSLFMAMEARLSELETRFRSLELAGVASGSQEKLAAAEPPSVATAS
GPPAAAEQPASQGGWVTVRRKRSPKQRPTVHHQPLPVANRFSPLGDTPAEKPTLVIGDSVLRYVKPTPATIVKCIPGARA
GDIEANLRLLARRNRKFGKVIIHVGANDTRLRQSEVTKINLESVCNYAKTMSDSVAFSGPLPNLASEEMFSRMSSLRRWL
SRWCPENQVAFIDNWSTFWGKPGLIRRDGVHPTRDGASLISSNLANFIRPKVT
>GB:NP_038604 L1 repeat, Tf subfamily, member 26 (LINE-element) [Mus musculus]
MPPLTTKITGSNNYFSLISLNINGLNSPIKRHRLTNWLHKQDPTFCCLQETHLREKDRHYLRMKGWKTIFQANGMKKQAG
VAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYAPNTRAATFTKETLVKLKAHIAPHTIIVGDFNTPLSPM
DRSWKQKLNRDTLKLTEVMKQMDLTDIYRTFYPKTKGYTFFSAPHGTFSKIDHIIGHKSGLNRFKNIEIVPCILSDHHAL
RLIFNNKINNRKPTFTWKLNNTLLNDTLVKEGIKKEIKDFLEFNENEATTYPNLWDTMKAFLRGKLIAMSAFKKKRERAH
TSSLTTHLKALEKKEANSPKRSRRQEIIKLRGEINQVETRRTIQRINQTRSWFFEKINKIDKPLATLTKGHRDKILINKI
RTEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINTLPAKKSPGP
DGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQE
HIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGQYLNMIKAI
YSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEVKISLFADDMIVYISDPKN
SNRELLNLINSFGEVAGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIATNNIKYLGVTLTKEVKDLYDKNFKSLKKEIK
EDLRRWKDLPCSWIGRTNIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFIWNNKKPRIAKTLLKDKRTSGGITMP
DLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFNNWCWHNWLLSCRRMRIDPYL
SPCTKVKSKWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVYKTKRPP
TDWERIFTYPKSDRGLISNIYKELKKVDLRKSNNPLKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFH
LTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWDCRLVQPLWKSVWRFLRKLDIVLPEDPAIPLLGIYPEEAPTGKKDTCS
TMFIAALFIIARNWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFLAKWMDLESIILSEVTQSQRNSHNMYSLISG
Y
>BEL-626_AA#LTR/Pao 48-6897 via tfasty with BEL-598_AA, 3 frameshifts and 1 stopcodon. [Aedes aegypti]
MPRKTRSQTKSKSKVSAANWQRDNDTRATNDIPDVNNALSAAVSDLVHPEENISLARMPQVRFAAAGVDVECDDRYDCVV
CDQPNNADQCMVQCRKCTNSYHFDCAQRSSGLKGNKDTFLCTSCVPRNTGPTTSSITGLSDTSSTRRARLARELELLEEA
RKLEEDAQREKLERERQINEKAAREKIERDKEYLARKRELLNQQDEADEVASLRSNHSIRSSTRRVEDWVVKQTTSNLGS
AVAEDTSTSADPMHHVAANPIDNRTQYRSSTPVRDVLPGNKRFTIKHEPFDVDLISAARTTGSITIGDNELDEAIGGSLP
ADSNRVSSVISLVDLKPLQNMLEEQEAIVSNHGTRPEAPKSLALPYSQWQSETGYLRKTKELEQRHQKENEIRRKRELEL
VNQIRQLQLQKEADIQQRNEYEADVKKQLQLFNDRQNAMDLQRQRDLEQRDAEINRLRETEHSLKIQLHSLSLALQEKDV
SRMQNRNAGEVVPNAVPAGQDRFQQIICPHPEELIVNSTRFPNKESTVNPNLVSATPASPHEINETPQPQPYLDHQFLNT
SLPIGGSINDNLLPHTHYDHQTLNISTPRGGPSTSFNNIPTTQNAETYAYHQFEPAMPSNIRGNCVQQDVFRPSPEHLAA
RQVLSKELPTFTGDPVDWPLFHSSYHHSTQACGYSDFENLLRLQRALKGAAKDAVSSFLLHPSTVPQVMSTLQTLFGRPE
QIVHNLIEKVRATPPPKPDRLETLVTFGLAVQNLCGHLKAVGLNWHLSNPSLLQELVDKLPANVKFNWAMYQQQFPVVDL
NVFGEYMTRVTSATSSITLTNMQQKIVKDDRAKAKEKAFVNAHTTGEKDSEQQINEDGTHLRTEQRPDLKMEQTKKCPGC
KVEGHQASECEKFKALSLDDRWNLVKNNKLCRRCLTSHLRWPCKAEACGLNGCQKLHHRLLHYDPATELKQPERSTNATV
TIHQSITTSMLFRVLPVTLYGKFGEVNTFAFLDDGSSVTLVEEEIARALGLDGPRESLCIQWTGGINKGIADARMVQMEI
SAQGSEKRYKIGEAYTVDKLGLPRQSLDFEEISERFKYLRKLPVKSFQSAVPGILIGIDNVHLLATLKLREGRIQEPIAS
KTRIGWAVYGRIQGGELMQHRQLHICKRPSLTELHDYVQEFFSLENLGIAAAPALESAEEERARKILVESTVRTNCGKFE
TGLLWKNDYVELPDSRPMAERRLKCLEKRLQRNSTLYEVVRNQIMDYKLKGYVHEATKDEIESFDPRRTWYLPLGVVTNP
KKPGKVRLVWDAAAQVNGTSLNDELLTGPDLLTPLLAVMFQFREREVAISADIMEMFLQILIRPEDRSALLFLWRDSPEQ
PIRVMVSNVAIFGATCSPVQSQFVKNLNASEYEENYPRASEAIKNKHYVDDYLDSVDTADEAVQLANDVTTVHGKADFFI
RNWRSNRREVLERIGEVNTVATKQFTAGKEINLERILGMIWLPDEDVFAFNFCLRGDVQRLMNGEVIPTKREVLGVVMSL
YDPLGIVATFIVHGKVIVQDTWRESIGWDDKIPSRIFQKWKRWLNLMAVISKVRISRCYFPGYDPISYNSLQLHIFVDAS
TEAYAAVAYLRGVDEGEIRCSQVSSKTKAAHLQALxIPRLELMAALIGARLRKTIERQQHSLKISRTILWSDSTTVMAWI
KSDSRRYRQFVAFRINEILSLTSVDEWRWIGTRANVADEATKWGKGPSVYPDSRWYRGPTFLYEPGNDWRDEQCVETTEE
LRPSFVCAHVRAEPMIGFARFSKFERLNRTVAYAQRYMDNLTSSCHWCSSETGTNIGQEELQKDEVTLGILAQLEAYPGE
VAALKNNKERGTKLTIERSSKIANLPPMMDGQDVLRVDGRLDAEGCSTFDEKYPVILPREHRLTELVINWYNDKYRHAND
ETILNEIRQKFFVSKLRASLRKTKSRCMWCRVHKSIPVPPKMGPLPKVRLTPFVRAFTFVGIDYFGPYLVKVGRSVAKRW
GVVFTCLTIRAIHIEVACSLSADSCKKAIRRFIARRGAPQEIYSDNGTNFIGVSRELAKELAEINSELGNSITDTYTKWR
FNPPSAPHMGGCWERMVRSIKTALEVIPIDRKLDDESLATMFLEAERMINSRPLTFVSLATSDDEAITPNHFLLLSSSGV
QQPVKLPVDEKQALRSSWDMIQRTLDRMWRRWITEYLPTIARRTKWFKGVRTIKEGDLVVIADEKVRNRWLRGRVARVYP
GKDGTIRKADVMTTGGILSRAVAKLALLDVEPKDDAGSEVQAT
>BEL-620_AA#LTR/Pao 671-5968  [Aedes aegypti]
MSKRKIPLRTLQARLRGLQTTFTNLYTFMENYTANTKPLEVSVRLNKLDDLWDQMNEAIDEIVAHDESPDDPEAFVKDRL
DFENRFFTLKTFLLEKGQPTQNTPSTSTAGTSSASTPHVRLPQITLPKFNGKIDEWLTFRDLYTSLIHWQVELPAVEKFH
YLRSQLEGEALAVIDSLPLTAANYSVAWDLLKQRYTNSKFLRKRQVQALFELPTVKKETASELHGLLDSFEKIVRSLDQV
VVNKADYKDLMLIHVLTSRLDSTTRRSWEEHSSNQQTDTLKDLTDFLQRRLRILEALPGKAPEQKVEPGHSKLPKRVSAV
KSCNATFQSSSPSKCIVCPENHLLYQCPQFLKMAVSDRDGILRSNSLCRNCFRRGHQAKDCSSKFSCRHCRARHHSLVCF
KGKVTEVKTSDKPEPTTTTSESSAESNTSRVVNLATTGVKICNSATSGQQHQAPTTGVALLTAVVELEDDKGNKLHARAL
LDSAAECNLISRRLRKMLTVKEENSTVEVIGIQGMASKVQGKFTVLVKSRVTNFSQPMEVYVLPKLAVQVSTATFDTSVW
DIPKGIELADPDFLKGERIDLLLGAESFFEFFVSDRRIRLGENLPLLVDSVFGWVVTGRYSVGGPIQSVLCKVAISSRLD
EVLERFWRCEEIGLENNYSPEEARCEAHFAQTIKRNASGRYVVSLPKNEEVLVKLGSSKSIAERRFFQLERRLTRNEKLR
EEYCAFMAEYEALGHMRLVAETVEEEGRCYLPHHPVVKEESTTTKVRVVFDASAQTSTGFSLNDGLLAGPVIQDDLRSII
LRSRTRQIILVADIEKMFRQIDVCPEDCRLQSILWRSSPDKPLATYELSTVTYGTKPAPFLATRSLSQLAMDEAEEFPLA
AKAVMEDFYMDDAITGAEDPNVAKQLRIQLQELLRRGGFVLRKFASNCEAVLEDLPIENRSIQTSDGIHLDPDSSVKTLG
LVWMPNSDTFRFKFRFSPLTEDAILTKRKVLSEIATLFDPLGLVGAVITKAKIIMQLLWRLQDENNRQSAWDAKLPAKVE
EEWVRFYQRLPILNELRIARLVTLTKPVSAQLHLFSDASEKAFGVCAYLRTQDEKGEVKVALLSSRSRVAPLKTQSIPRL
ELCGALLASELYLKIKASIRFSGECFFWVDSTTVLRWLHAPPLTWATFVANRVSKVQASTENCHWRHVPGEQNPADQISR
GIWPQEIVDNQLWWKGPSWLQLSPENWPSDKAFTSEGHEEERRRAAFVVAAPVEANFFAEYLARFSSFTTLIRTTAYLLR
YFHNLRAKRELRRSSGFLTTEELQQAENFIVLRVQRETFHREVSALTKGECVPRSSPLRWYHPFVAENGLLRVGGRIGQA
NESEYTIHPIVLPARHLVTKLLMRYYHQRLLHAGPQLMLSTVRLRYWCLGGRNLARETYHQCVRCYRTKPKAIRQFMAEL
PAPRITPTRPFATTGVDYFGPVYVRTGYRQRAVKAYVSVFVCFSTKAVHLELVTDLSTARFLQALRRFVSRRGRCASLYS
DNGTNFVGAKNQMMELINRLKSKDHHDVVAKECAEDGMSWHFIPPGGPHFGGLWEAAVRSAKVHLLRVLGDTVVSYEDMV
TLLTQVECCLNSRPLTQLSDDPEDLQALTPGHFLVGSALQALPDEDYMQTAVGKLQDLAATQRRLQDFWKRWRSEYLTQL
QARTKWWQPPVDVTVGSLVVIREDNVPPIRWKMGRITNTHPGPDGVVRVVTLRTMNGTSTRPVSRICVLPVPASTEVKSA
EGEEN
>BEL-647_AA#LTR/Pao 65-6036 via tfasty with BEL-4_CQ, 4 frameshifts. [Aedes aegypti]
MASSPSKNELCLFCSMSESMSEDVDWVQCGKCKHWAHFSCAGVDQGIVNSHWLCPQCVPSSVQQLRVPDATDKKRSKKSG
KKSDGGSDQGVGSDVDPVEKQLEEEQLAKEKAFAKQMAARKKLLARQKAWKEEQLKQEREMRELELQVQREMEEQQLQHE
QEMLDAQLAAEREFLKKRDAIRKQFASSVSRVNALKDQEGAVGGASADNPKQKVYEWLDEQTEIAKLPSAADFRGAYPKG
DPLRAESKKVEKPKLMKKVREVVETESESSEEDESSDSSEDRVRSSRHSNKAGDGPGRSVGRSSRCSEVGDRSERAVGRI
TREQLAARKAVSQHLPKFRGEAEVWPLFISSFEHTTAACGFTNLENLKRLQDCLQGDALEAVRSRLVLPDSVPDVIRDLR
SLFGKPEKLLKTLLTKVRSAPAPRADRLETFINFGITVKQLCDHLEAARLNDHLNNPMLVQELVDKLPPSYKLDWVRYKR
GRVDSPLRMFTNFATDIVSDVSEVAEFTTLSMNDRVRPGKENNRKKEFVHVHESEPKRSEVNRSEVASRPCWICGRTDHL
IRNCEEFRRMNIAERLREVERQKLCGVCLNKHNGNRCHSKIRCVMRNCQGAHHPLLHRVEESVQLQKAKSDCTVIFRMMP
VTLYVGKRQYDTVAFLDEGSSATLVDDVVAKRLKAEGTLEPLIVTWTGNINRFENESRSVEMMMSAKGSREKFPLFNTRT
VSELQLPKQNVRYAEVVQRYKHLAGVPTKDFPSGVPTILIGLDNLHLFAPLESRVGKPNEPIAVRSKMGWTIYGSEKRKP
TVQTYLNLHSVAPVSNQELHDLMRHQYVLDETACSSFAVPEPAEEKRAREILETTTKRIGDRFETGLLWRQDERRFPDSY
PMAVRRMKALDRKLERSPALKENVCRQIEEYQMKGYAHKATDAELTETPQAAVWYLPLNVVVNPRKPGKVRLVWDAAASV
NGVSLNSELLKGPDMLVPLPRVICNFRERPVAFGGDIQEMYHQIRIRTEDKQAQRFIFRGNSDDAPQVYVMDVATFGSTC
SPSSAQFVKNLNAEQFSDQYPEATVAIVKRHYVDDYYDSVDTVEEAVQRANEVKYVHSRGGFHIRNWVSNSGEFLENLGE
RSSESSVHFSLDKSTEYERVLGIVWDTVEDVFCFASASKSEYAEVLSGDKRPTKRIVLSIVMAQFDPVGYLAPVTILGKM
LIQDLWRTGCQWDEVVDEASFGKWKRWTDILADVRAFKLPRSYFGSARSEEVQDVQLHIFADASETAYGCVAYFRAVVRG
EVMCALVMSRAKVAPLKQLSIPRLELLAAVLGARMSQTVCENHNFHITKVVFWIDAEVVLSWIRSDQRRYKQFVGFRIGE
ILSLTRLADWRWVPTKLNVADQLTKWGKNPEIDPNSAWVRGQQFLYESEEEWPKKSLPPANTMEELRVHLLLHDVKVPAV
LVDATRFSKWTVLVRTMACVIRFVSNCRRKRERLPIETLRATRSQLKVLIPNAGASVRVPLKQDEYEKAERCLLRIAQSE
SFVDELKVLSRNKIRPASQWMAIEKSSPLYKLTPLVDEHGLIRMEGRVERAEFLPFDLRFPVILPDDHRITRLIVQHYHE
RSGHGYRQAVKNELRQLYYIPHVDAVVRKVSASCMWCKVHRCRPEAPRMAPLPVQRVTPNLRAFSYVGVDYLGPYDVTVG
RRTEKRWIALFTCMVTRAVHLEVAHGLTTQSCLMAIHRFIGRRGWPIEFFSDNGTNLRGASKEVVEAAQGIRDDCADLLT
NARTKWTFNPPAAPHMGGVWERLVRSVKEALRALDDGRRLTDEILQTAIVEAEDIINSRPLTYVSQQSDEAEALTPNHFL
RGVSPNQPCVALPPPHPAVALRDAFQRSQQLASVMWERWIKEYVPLLNQRTKWFGEARPLRAGDLVYVVEGANRKCWVRG
VVEEAIKSGDGRVRQAWVRTSTGVYKRATVKLARMEVQDGNPEPDVASGTELRAGECSGSTAAPMRRESER
>CER10_CE_pol#LTR/Pao 4234-9863 via tfasty with CER8_CE_9759-15554, 1 frameshift and 2 stopcodons.  [Caenorhabditis elegans]
MASTSNNQHQSEAPPTETPTLTTSPTTSPQRLPQRNARSFAKATSLGQRLVGPLKSYITSSVNHGNRCLGNVTQHLTKYF
HADSVSPITETSLNNAEYILRKGEAYIDRLEKLNQYTQEKYKDVEFQESPEKERFQREVAQLLVDIKPEVVLVNLKMEVH
KLRTALEQANRVLSPKNTSGYVFSDFNTGPFSSDSEAEQTVRNQHKSPTPPATAPGATANTSATSTPDLSTISSEANAHL
NSEYPHTDSLASELVRTTEQFKALERRNEELRCIADLDKQTIAHLQDRCTAQQQEKEESIRQGEREREEYRKYIKERTKD
ERIAEMKRESAATAIPNMVTEPQHQPPIMVTQPHPCSNYEANQWRAQRPEEVESDAAMIARMFASSQDRMTADISKVLGE
QTATLKAIALQVKHNSDRLDDKELNGDEAEYDAACALEQRAQEATNQKPKEAEVEKLLEQRSTHRMNYKMAMEYLISFNG
SQNSNFSQFYSMFNSTVMNNKDIGDETKLAILISKLEGDARKCIAEISEPSLAIETTLECLETVYGKSDTKRSLLQKFKA
LPFHPSDPKQMKLDLMSHKNLAYKLCIQGLGKDDDRITIEILDKLPHIMRTRVSEHYSRLSAKGNVTAVLMYQYISELID
GWQVEIENSTHHGAYRNNNTMHELRTPRAAIALHGNAYAGPTPQNGQYNQNLGGNSNNYTPAPYNSQKQPGGQGSRISLP
KVYDAQLFKEQFKDPITGSMLPGYYRPGEGVQLDIIHRTFPLNDETSKFPCTLCKGSHNPLRCGLTSWEFRNAIEMTRRC
PICTFKHRIENCTSQFKCAYCSGLHHTGGCPRKEHYRDVKNYPEEPVLSCSFFVTCLNQKGPNPKPTPPTLNKAFPAGTE
TNVPSSVSQADLPTALQYCTISSSQSVSISSKNRSNVVTSNPIATGNPVSIVPNSLNKPNKVTFLSCYPEPPSPEAIREH
TALVARDKPHNFIHIEHRPDERLTFMCLTLEHGEPLIALVDSGATISLIGHKRASELQLEIVISVTMTMNGFNGRATSIS
NIYPISVKLRNSSNCARFFITGLDNMPTTSFTAPKFSADDQAFLLENGINPYEIQAQKRLNGLPMEAVLGSDVIAWLESD
AHTKRYLLPxKRVLQDTIIGYIVHPPPVLVIYTNEPSLxDRADENCANLMVANTLLTGEETEDLLTKLVNQIEQSWKLEN
LGIEEISVAENSKKTALDLQAEFDRTIRYNSDGELEVALPYNGNQNRLRSNFKIAHKGLEILYINLTKSQKSNIMDQYDA
VIKDQLSAGIVERVWPNMIGADDVKYYMPHRAVIKETSNTTKLRIVLDASSPPGPEPSLNDCLYAGDNLVTPLYGILLRG
RIYPYVVVADIEKAFHQVRLQEEFRNATLFLWLKDITKPPTPDNICTYRFTRIPFGVASSPWLLAASILHFLDRNPNPLN
QRVRENLYVDNCLIGTFDKSEITEIIKNSKDIFMKMKMNLREYVTNSEEHMAAIEVEDQAKHRVIKLLGCEWDSHEDIDT
LSVALAVLDIDHPTKRQVASKMAETFDPLGLITPLIVSFKRLMQNLWRNPMKWNDRIPKELLADWKTIQAAFMDTKITVP
RRISIFDDPPEEIQLLMFSDASTDIYATAAYVQYSYKSRKPVTRLLTSKSKIRSAKNEMWTIPKLELLGIECSSNLARTI
IAELGTLATKIKKVRLFTDSACALYWILSNKTTRVWVANRVSQIQANQKILEECGIETSLHHCPTKENPADLATRGMTST
ELQASTFWLNGPAFLERPQSEWPCKIEGQVKCRVEFEQLVYSEILDPKNPKTKKDKKEPIKSIIPRAELLLREMQKGVRN
AISLPEYQTASRMPNGAVETIRKSWSGLPWSSRVSPR
>CER10_CE_p1#LTR/Pao 400-1260 Similar to CER8_CE_p1 only [Caenorhabditis elegans] 
MLALGSDPRKQGFQNKATGQPCTKWPIGTGRSKNLILKTLFPRDNARGQNNPQEGPESTRCPRCGSHLLGMALNDHKLHD
CVFKNITPMETLEFMAVNHWTYCGGCNTRSHMHPRGECQRVGCYQCGSMGHATAQALCDLPIGGVTPEAQTMQQETAWGF
RRECLQRTRALILNTTHPLKYRLFTDHRAIFIEAREPHDQAGWRVYRDTDNEFPFADIQRYSYTHENPPRRAYFTVLQPP
EYALKTVNKIPAFSPDESAYLERCGHWITQYRQGNEVRTIKSWHLK
>BEL-619_AA#LTR/Pao 152-7146 via tfasty with BEL10_AG, 4 frameshifts. [Aedes aegypti]
MSHIKLITNKNGHCRLCTEDDKAGNMAVQCDDCDRWFHQHCVNLEQLPSKKERWICPKCTEQEVEKQKLTQELNMLKNPV
TMGQFEQLIARLNIKNEPEQNHLSILVKRQAMMSLPRFSGTAKEWPRFKSAFESTTDEGEFSNVENLNRLQQALEGNALK
AVSHFMFEPENVPKIMERLEENFGRSNQIYEEYLNNLMKTQGNSNNSVVEISDALDAFVAHIGIMEKPEYLKDFRLIDEI
VKKLPFNLQVQWIEVLQRNAESPTLKHLSEWLMRIAKLYRAVQVNTSQTKDKKVRNNVHHQQPDKERKQPFEKTTYNKRS
ENPTQGKRLPLTCGYCKSNHTIFNCESFNAMNAAERRQVVKEKTLCWSCLRPNHQSKNCPSARSCGIGTCKATHNRLLHT
KNTPSIESSAKPTPIVETGSENVQSINHHQDSKTIKYFQILPVTLRNGDNIIKTYAFLDAGSSLTLLDEDTANGLGLEGR
PETLKLLWTQDISKATNTKIVQLEINGINQKRFALKGVRTVKNLQLPMQTLDFGSMEKKYPYLKDLPIKNYSAAKPTILI
GIKHSHLLVPLQTVIGGEHEPIALRTKLGWIMFGNAVSQIDNEYAMMIHQDDEMREMMKQHFSVEDFGVKIVNETVESVE
TERSKEILKNTLKRSGDRYEVGLLWKYDKSNFPDSYGNAYNRLLSLEKTLNKQNNVELLHWAKKTFKEYEDKGYIRKLTE
TEIENPGTDRVFYLPHFIVTNTNKIPPKPRLVFDAAAKIKGVSFNSELLSGPDATSSLFGVLLRWREGMVAVTGDIKEMF
HQVKIRPEDQQAQRLLWRDCDPSKNPDTYVMQVMTFGSTCSPASAQAVKNTNAELYREIYPDAVDSIIDGHYVDDLLDSF
NNAVTGIKVVRQITEIHDHAGFHIRNFASNSPELMDLIPENRRMVANVKSLDEKESNVEKVLGIYWNTLQDYIGYKLNIN
KLGEEVLKNIRAPTMREVLAFIMSIYDPLGLISNITIQGKILYQELHVASLEWDDCIPDQLLVPWRDWMDLIKSAENLSI
PRCITTEAITELELHVFVDASEDAFAACIYSRSKTHYGFCIRLLAAKSRVSPIKPISIPRLELQGALLGTRLTNQVKEKL
RVKITDITMWSDSKTVLAWIKTEKRKYHQFVGHRIGEILDSTTKDQWRWVPSGLNPADEGTKLVKGKSIWLDGPDFLRQP
EDIWPAKSSHEPTTAEIVAFHNEPETYSFIRENDYSSWRRLVKGLIPLKKFATWLQCKEALAKGMKYSEWKCIENALYRK
AQNDAFPDEMEALISGKPFPKTSSILGFRPFLDEFGVMRCKGRLERANILPLATRIPIIMPQHHRLSKLLVRSYHEEYLH
QEDGAVMTALHQKFWIINLKSVLKNVKNCCQKCILTRSKPIEPLMAPLPPPRVQGYVRPFTNCGVDYFGPYKVNITRNIT
DKRWGVLFTCMASRAVHIEMAPKLDTDSFLLCLRNLQNRRGKVAKLYSDNGTNFVGADAVLKSLVKEINAKMESGTAAEM
EISWHFNPPGAPHFGGAWESLVKLAKQAIREMMDKWKENVLPKPESLQAAFTQAEYILNSRPLTDVPINCAEDEAITPFH
ILTGKGGKYVPPRMPTTTKDEKEQWKLVQFYQKYFWDRWKAEYIPRLLKRTKWQQKVKPIKVDDIVVLADQDGLPGSWLK
GRIVKVFPGKDGQVRSADIQTQRGILTRRAGKIAVLDVSNKEPSLTTASENLITHNEIEDNQPKRKLVDTTFPNWGKRIK
HDEDEVKSRARSLNDSHRQTDQRKIRYTTPGTVAGVFVTAAALLSLTDALIVKPIESDGLVFDHHGTCVLKRGIWKTKLT
TNLYPEEDISLLNEIHRNISKALESMEGMVKDYTLNQTVQTIGRHCDETIMDITQFSRPKRSKGIFGYIKDFIFGGDDVE
EDIAAMRIHDDRLFHDISDTMAKINGKTAHMGEQFNDRIFRLHQDINRLHNDARFEMIETKTLETTILAREMIDEIGSKY
RKLRQNPLPREVQQQLKQNISASLPSGYTTLDHELSNDIKFAMINGSLIIIVETIVVNKDLYELFNVYAVPNSVNFSQII
IDERSIAINHHKEYFYPEENDMVKLNATHLLITRATIKRKHDCISASIMHDITNIKCMTQIRSSPYSHLIQLSESNKVLF
YKSDNEKVVVHCNSVVSSVPYEAGIITIGPDCRIESAYSTIYGSISGESHKPITFFKPRAQLYYHIEKPHDANANVTSEI
EPENPYLNDVITVVGTPEVIYRNSNTVIPLLVIIILGLIIGVYVYCKYFNNKVHASNITESQSNQDVNQRRSINLLPLPM
VRYRNDPVVEEAV
>BEL-236_AA#LTR/Pao 1356-6644  [Aedes aegypti]
MPPTKKGSAALRQLKTQLEEVTASFDDITSFIQQFNGNTTASQVEVRLERIDELWDRFSEALVDLKSHEEFEDEEKYYNK
LRTVISNRYYEGKSFLKDKAKELQEPNDSDTSIHDSSAVGVLEHVRLPQINLQKFSGEIDDWLSFRDLFASLIHWRTDLP
EVEKFHYLKGCLQGEPKTLVDSLKITKANYQIAWDILCKRYNNNKLLKKKQVQSLFKLPTLSKESVSELRSLVEGFDRIV
QTLDQIIQPEDYKDLLLVNLLTLRLDPYTRRAWEECAASKEQDALKDLTEFLRKRIQVLESLPPKPADSKVFQQANPKPK
PTAVKTSYNSVQSTGGRCVACKDNHFLYQCSAFHQLSVADRDSLLKSNGLCRNCFRSGHQARDCQSKFXCRICRKRHHTL
VCFKSEKENATTVVAVAGGNHPSNSKDSHGSTGSNPTLVANMAATDVSTCNIAQKVSSRILLATAVVIVEDEIGARFNAR
ALLDSGSESNFVSZRLSQRMKXSRNKVDVXVXGIAQGTAKVKHTVQMVLRSRVSDFSREMSFLVLPKVTANLPTTSINTE
GWNIPDGIHLADPAFFQSNDVDIVLGIEAFFDFFETGRRISIGDQLPILTESVFGWVVSGGCSSSSVSQQINCHFSATTE
LEKLMEKFWSCEEVEFANSYSPEEQLCEDLFQRGVQRGSDGRYTVPLPKNEGVLSALGESWDIAFRRLLGTERRLARDEN
LRKQYVAFMDEYLNLEHMRKVEDVGEESVKRCYLPHHPVVKEASTTTKVRVVFDASCKSSTGVSLNDALLVGPVVQEDLR
SIILRSRTRQILLVSDVEKMFRQILTTPEDRPLQSILYRFSPDEEVAVFELNTVTYGTKPAPFLATRTLQQLAADEKTNY
PLAARAIGEDVYMDDVITGTDDLDTAISLRTQLSDIMECGGFKLRKWCSNVQRVLEGVPTENLAIPDSTGINLDSDKSVK
TLGLTWMPATDTLRXQFDIPLLDPPIISTKRRILSNIATLFDPLGLIGATTVSAKIFMQRLWTLKDAQGKRLDWDQPVPS
TVGEEWRKFHEELPLLNEIRVDRCVIIPNAISVELHCFSDASEKAYGGCVYIKSQDSNGTVQIRLLSSRSRVTPLRSQSI
PRLELCGALLLSELFEKVKNSTRLSVPTFFWTDSTCVLRWIAATPTTWTTFVANRVAKIQTITEGWNWRHVAGTDNPADI
ISRGLSPKEIVHNKLWWEGPDWMKADRENWPCGGADDLEVGEEERRRTTVVCVASPIAQFNKYYLSKFGSFADLTRRTAY
WLRLMKLLQTPKEHRSENSFLTTAELKRAEYTIVQSVQREIFVDEFKALEKGESVSKRSPLRWFHPYIDADGLLRVGGRI
KNSDELEGTKHPAVLPAHHELTRMIMRHFHERLMHAGPQLLLGVVRLQFWPLGGRNVARQEVHRCVKCYRTKPAIVQQFM
GELPSSRVTASRAFTKTGVDYFGPVYIRPAPRRTAVKAYVAVFICMCTKAVHLELVSDLSTERFLQALRRFVSRRGRPSD
MFSDNGTNFVGARNKLNELFRMLKDSGHHDRISTELAVDGIQWHFNPPSAPHFGGLWEAAVRSAKNHLLKVIGENVVSSE
DFSTLLTQVEACLNSRPLVPMSDDPDDLRPLTPAHFLVGSSLQALPDNELSDIPSNRLNKFQLIQQRLQHFWNRWRREYL
SQLQARTKRWKPAIAVEEGKLIVIKDENVSPIRWKMGRIIKLHPGEDGVTRVVTVKTATGELKRPVEKICILPIPTESED
NAS
>BEL-234_AA#LTR/Pao 101-5479 via tfasty with BEL-631_AA, 2 frameshifts and 2 stopcodons. [Aedes aegypti]
MQRTPVNKNVVASIPRVNDSISGEQHDRNKTVSESLRSCASGSGASKRSHKSKVSSVSKTQSQIRALELVDELEEEELRV
SLEQDRIEAEQRLEALKIQKDLELKREQKKAEFIRKKRERAIQISELRSCSGASSCGSTQRVQAWLNENENTANDDVDNG
ATGNAPRGAAATGTAVNEALCHALKALHSRNVRDLPQFSGNIMDWPIFENEFKTSTAEYKLTDRENLRRLNNALQGKARK
TVECLLSAHENVDLIMRMLKSNFGRTEWVVANRLELLRNLDYVKDGNIESFRSFYNAVIGTAVALKNVKAEAYLINPELI
SQLAEKLPVFSKQMWVRHKAFLLKQDLIIGFQEFSRWLEDEMENQLASMNPVFSNRKERKDVSFIRPRPPVLNVNARAAQ
VQGKCPLCSSNDHRSLAKCEQFTKLSVNQRRSAARSCKVCYICLRQDHSRRECRSDKTCSVCDKNHHDLVHSDEEYKKPV
NTFEKKQAEDLCHVNGRNERTLLRVGKVRIRSQGRVQDVFALFDEGSSTSMIDSNLAEKLDLRGPVSPVTYRWTNGITHN
DSESMMLSFQIAGPSDQAKWYEVDNVRTIKNLNLPSVDFDIAKIMSLYPLLDEEKMSVLQNASPKMLIGSNNAGLIVPLK
TVQYSVRGLQLTRCHLGWTIHGEIEPGTVQVADQFHVFLCDNNQDLELTELIKQQYKVEDFGIRPTGPTMSEEDERALDI
MNRTLKRCEDRFEVGQVYRYNNFSFPDSKPQALRRLTIMERKMDADPKFAEQYCQKIEDYIEKGYARKLRPEELNETSNT
WYLPHFSVMTANKFRLVMDAKAKSHGFSLNDLLLKGPDFVPSLTAVLMRGRQKKVAFMADIKEMFHQVRIREQDQNSQRF
FWRGMNRSTPPEVYVMMAMIFGAVSSPSIAQFIKNFNAKELEERLPGVLRPIVKQHYVDDYFDSTDTEQQAIDLIKNVIT
AHEHGGFKLVKFVSNSEAVLKSLDPSLRAEPKTDVRVLGLLWKLSADEIVFSFDFPNLDEALRSGVDIPTKRQLLQFMMG
IFDPLNILSPVTIHLKILFQDLWRLQIAWDDQIPEGLIPKWKEWLRKTAQLKEITIPRYYFPGVPSFRSVELHAFSDASD
KAFATVIYMVHRYVVIALPGIxQIACALVLAKSRVAHLKSRTVPRLELQGCVLSSQMMKVVQEELEVEITSTYFWTDSKI
CLAWLCTKEKLTAYVGSRVCKIKENGHNIGMWNWIPSELNVADLATKSSKIESMTDWLRGPEFLKHRQSEWPNQACVTMS
SEEAVNFHLGLEADEESVCHQVYGKSDAVDMPDIGRFSDYNRLIRSTAYYFKMRKILALPKKEKPKKFMINVHDMEEAKL
AWFRKVQMESFAEEICSLRTSGHVKTSSRLHAHSPVLVDGIIRMKGRIQDKSKPFDVNNPVILPDNHSFTNLLIGTYHNA
NGHQGxETIVNNLKHRHRILKIKSQVKKFGNLCVKCRELRAKPNVAQMGNLPPERTTPFAFPFTHTGIDYFGPLTVKVGR
HVEKRWVVLFTCMTSRALHLEVVPSLDANSCIMAIRCFMAIRGIPQKILTDNGTNFTGANQELKKLVKELDQQQIEETLS
VRGIEWSFIPPGAPHFGGCWERLVRSVKTGMRAMLKERNPTDLVLRTTLCEVMNVVNNRPLTEVSSDPQEPEPITPNMLL
LGRNNHMQYDHDFIESSLDCRAAYKQAQIYADRFWRKWVSAYRPELMKRQKWQDNRNYYEFAIGDFVMIIDENSHRGCWP
KGIIEKVFYGSDGKVRTVTIRTSRSTYTDQLRR
>BEL-237_AA#LTR/Pao 370-5807 via tfasty with BEL-37_CQ, 12 frameshifts and 3 stopcodons. [Aedes aegypti]
MSDKNTRYETPKVQRNITPKNLLDALLGSVQNSSPSETESNLPPTNPVSNRQPTETVAQQKAAQAKRLEKKKAMEQKLEK
LLDRRDLAKEKLIQIHEETLEVQVNNIHWLNLQLESIRRCYDDNEKTHSELCDIVSREQRKAFTEVxNLQFDRYYDNLFV
QIQTAIAKLQSEEKAKQARWRSAAHSAVPQQSSTANPTAPHLQVPLPTFDGSLENWYTFKCMFQTIMGRYPNESPAIKLY
HLKNSLTGSASGKIDQDVINNNDYKAAWKVLEDAYEDERLIIDTHIDALEMLPRMTRENGEELRKLIESCSKHVDALKNL
QLPAEGLGEMILINTVAKRLDKVTRTLWESQLDQEECPSFGEMMDFLRERCRILQKVKGYPEHRASSYRSQAEGKTRAED
xLPARNFVQVSKEVCHCCSGDHPIYKCSQFRELCVPAATARxKQAGLCFNCLRRGHRTVDCKSEQLCKTCRRKHHSLLHD
DKACSEHKTDRVPFHPPLVPEGSPMNYLLYKPKGLLTALKSPNMKKQVLLSTADVLVCGSGGLRLACRALLDSGSDSNIM
SEELARSLDVAWERIDLPITGLNNSETRVKYKLRTKIISRVNQFSAILDFLVVPKITTNLPMVEVDIRSWPIPAGLSLAD
PSFHVPDEVQLIIGAELFYDLLMQGRMKIGDGCPTLVETDLGWIVSGPVFTCSKKIQRSVCNLNHATSEDLNRTLSKFWE
LEACGEASPLTAREHAVEMHFERTVSRDASGRYIVRLPFNELKGKLGDSYETARRRFEKLLRTFVDDSKRIRYTAFMTEY
LSLGHMVEVTDDPLDGHFLPHHAVYKEASSTTKLRVVFDASSKTTSGLSLNDALNVGPTVQSDLLSIILRFCSHQVVLTA
DIPKMYRQVRVHEADRYYQRILWLNDKNEIATFELATVTYGCSSAPYLATKVLLQLAKDEEHELPLAAKVVERDSYIDDF
LTGGKTAEEVIQIYHQLSDMLKRGGFGVHKFCSNDVTVLSNIPEELQETRMDFENADVNTAIKTLGIIWNPDQDYFSFYV
KTFDSQKVFPPTKRSVLSDIGQLFDPLGFLGPIITTAKLIMQDLWRLGLSWDQPLPQQQMEEWQEFRQQLPMVNEMKKKR
CVVAETGNDVELHGFSDASTRAYGAVLYTRCVSADGSIYTELVCSKSRVAPLKPTTIPRLELCGALLLAHLVTKTVAAMK
IPFKSVTLRCDSRAVVLCWLKKSPLAMNQFVSNRVASIVELTQDYEWHYVRSENNPADLISRGLMPDALEEHNLWWKGSP
ILNEIEPRTDEYDDSIELPEQRKVTTVSATKKVSPIDFNRLSNFRRLQRAWVYVLRFIANIRTKTRNISEPTAVEMDEAL
LVIVKLVQQEAFLDLFKLLSCGSQKRNNYSGLSPFVDSDGLIRVGGRLKYSSIPYDGKHQLLLPDKHQVTLALIRKLHEE
HLHVGQRGLLSIVRERFWPINAKSLIKKTIATCYVCCRNNPRPSSQYMGNLPDYRITPSPVFANTGVDYAGPIVLKEAGR
KTVPYKAYIAVFVCLATKAIHLEVVSNLTTDNFIAALQRFVSRRGMISNIYSDNGTTFVGANHELAALRTLFEDQIHQRK
LNDFCVTKGIQWHFIPPRSPHFGGIWEAGVKSAKYHLKRVVGETKLTYEEMATFLAQTEAILNSRPLIPVSDDPNDVEVL
TPSHFLIGRSAVCLPEPSYDQEKIGRLSRWQHVNLMKEHFWKRWSAEYLHHLQSRPKWHNGITKFEVGSLVVLKDDNTPP
HQWRIGRIQTTHPGKDGIVRVVTIKTSTGEYRRAVTKVCVLPLIDPEESTAG
>BEL-615_AA#LTR/Pao 80-6180 via tfasty with BEL-635_AA, 1 frameshift. [Aedes aegypti]
MERSRTNDGLTYTCQSCDQPDQAEPRMIACDNCRKWQHLSCAGVDPTIENYANLKFTCNGCKLKISSLRKIPPTDRSTRS
SVKKGVNVPSHVSSERSVLEAHLKVVEEQQQLEEQELKEQTEIQQREIDEMQRRLEERKSLLEAERQLRERQLVMDKEVC
ARQQQIRKESLEKKTALIRQIAESSSKGGSLGGSVTNSNDKVTKWLETAAEGPERASKDWRASNSIRSTPPCNPHQHGER
LPSPRRQTGPASLPAMHHLEATLEQLSVNETGLPPANAHQQQPALQEHNVNIFQQAANIGPASLRHIASPHPREHVVSNP
RENSYTEPAPRAAGGLTFPRRTPEALPQQGLQPPVQLQGVNIQARQSPLQPQTTAAIHHRVLTSEQIAARQVLGKELPVF
NGNPEDWPLFVSSFEQSTIACGYTDAENLIRLQRCLRGHALEAVRSRLLLPTNVPYVIQTLRTLYGRPELLIRSLLAKIQ
RVPPPRQDRLETLMEFGLAVQNLVDHLVGAQQENHLSNPVLLQELVEKLPGSLKLNWAVYKRQDVIVTLATFGSFMSELV
SAASEVTMEIPVFSRAPRNEHQRSREKGFLQTHSSRPLPSGSSTTVNNGKDGQKPGKTCSICTKEGHRVGDCTQYNLMTV
EERWSVVQKKGLCRTCLNNHGKWPCKSWKGCGVSGCTMKHHTSLHIPSAGPPSVNVSTSHFSSNSEALPLFRIQPVVLFA
NGLSLTVFAFIDEGSSLTLLEADIAEQLGVCGPKEPLTLLWTGNVSREESKAQRIEIEIASAGSQSPSHLMQTHTVNSLV
LPTQTLRYQDLSARFPHLRGLPIEEYENVQPKLLIGINNLHLSVPLKIREGAPRDPIAAKCRLGWGIYGCAPRCSPRVVP
INFHIAAASDSDRELNEQLRDYFAVESIGTPNSSTCVLESEENRRARTIMEETTRRTSSGFETGLLWRMDDVEFPESHSM
AVRRLQSLERKLEQDSFLRDSVRQLIWDYERKGYAHKATMRELDSMDSNRMWFLPLGVVRNPKKPQKIRLIWDAAAKSHG
VSFNSKLLKGPDLLTPLVAVLSRFRQYPVAVCGDIREMFHQISIIPQDRSSQCFLWRDEPTDRIQTYVMDVATFGSTCSP
TSAQFIKNRNAEEFAKEFPRAAAAIVDNHYVDDYLDSFRTVQEAIEVTNDVRLIHSRGGFELRNFSSNSEKLLQGIGETP
DRTGKALVLMRGEVESVLGMQWLPMEDLFTYTFNMRDDLQPILANDHIPTKREVLKVVMSLFDPLGLISFYLVHGKVLIQ
DIWAAGCSWDEAIGDELYAKWRQWINLFPMLQSIKIPRCYFNKPLPEDLNGIELHVFVDASSSAYACSAYFRLPSETGIQ
VTLVTAKTKVAPIKTLSIPRLELKAAVLGVRLTESVQSHHKFSISRRIFWTDSSTVLAWIRSDHRRYQKFVAVRIGEILS
SSDQDEWRWVPSEMNSADKATKWNGGPDFNVDNSWFRGPLFLRMEEGHWPKFPKPFTTREELRPNHSHWISAPLVDIFRF
SRWTRLHRMMAYVYRFIGNLRRKKNGQHLQKGPLTQHELKLAEIGLWRIAQKDAFSDEMKVLRLTQGPPDARHEAVKKSS
PLFKICPYLDEQGILRMRGRIAACRFASFEAKFPCILPRRHRITQLIVDWYHHHYRHANRETVVNELRQRFEIAKLRAVV
ERVEKDCMKCRIKKASVRSPLMAPLPRARLEAYIKPFTSVGLDYFGPIPVKVGRSQVKRWVALFTCLSIRAVHLEVVHSL
TTESCIMAVRRFVARRGPPAEVYSDNGTCFHGANRELQLQMRETNEAMALTFTSAQTRWIFNPPSAPHMGGVWERLVRSI
KSATNVLLESPRNPDDETLLTILYEAECMVNSRPLTYVPLESADDEALTPNHFIFGCSNGTKVLPTEPVDIRRTLRSSWK
LAQHIMDQFWCRWIKEFLPVITRRCKWFKECEDVKVGDLVLIVGESTRNHWIRGRVEQVIVGKDHRVRQALVRTSTGILR
RPALKLAVLDILESSKPDLDDVSNTDLDQGLREG
>BEL-593_AA#LTR/Pao 1477-6735  [Aedes aegypti]
MLTRTTRSGDSLKALNSKLKGLKASLNNISQFVKNFKETTTASQVNVRLDRLDLLWQQISETVWEIQAHDDYEEQEGFEK
EQLWYENCFYDAKSFLTEKAQEFRDESASNHSSRSAGGSHSSMERVRLPQIKLQTFDGNIDDWLSFRDLYTSLIHQKPDL
PEVEKFHYLKGCLAGEAKALVDPLKITGDNYKIAWELLLKRFNNSKLLKRKQVQALVKLPTLTRESVTDLHQPVDGFDRA
IQTLDQVIEPAEYKDLLLVELLSSRLDPVTRRGWEEHTSAKEQDTLKDLQDFLQRRIQILESLPAKPASRNEQQPLKRNT
SSSKVSHNAVQWNNAKCPSCAEIHGLHTCPAFLKMSLTSREAFLRAQSLCRNCLKRGHLARECSSKFSCRNCKARHHTLL
CFKGERKDSGNQQSEKENSRKNNDDTASGSKAANASSVETASSNSAQRSASQVLLATAVVVVEDNQGSRYSARALLDSGS
ECNFISEGLSQLMKVSSQKVDIAISGIAQTGTRVTRKIQAVVKSRNSIYSQPMDFLVLPKVTACLPTSTVQVDGWNIPAD
VELADPEFFRSRRVDLVLGIQAFFSFFPTGRKITLGSGLPALTESVFGWIVTGEVAKSGHSAKYTCNLSVSGKLEELMAR
FWSCEEVGAVSKLSPDETRCEEQFERTFQRNSDGRYVVTLPKNNEVLAELGESRDIALRRLRSVERRLARDPDLQRQYYD
FMAEYLELGHMKKVEVSEEETVKRCYLPHHPVIKESSTTTKVRVVFDASCKTSSGISLNDALYAGPVVQQDLRSIVLRSR
IRQVMVVADVEKMFRQIWTNTSDTPLQCVMWFEPDGSVVTYELLTVTYGTKSAPYLATRTLKQLADDERERFPLAVSAVQ
EDVYMDDVISGADDVDSAVELRRQIDAMTSSGGFKLRKWASNSPTVLEGIPKENLALPDGINWDQDAEVKTLGLTWLPNV
DCFKFAFSLPQITDDQILTKRQVLCYIAQLFDPLGLLGATITAAKIFMQRLWAMKNEANQSLQWDDPLPVTVGEEWRTFH
KQIPVLNEIRIQRCVVVPEAVSIEFHCFSDASILAYGTTIYVRSERQDGTVSVHLLTSKSKVAPLKVQSLPRLELCGALL
AAQLWEKVAESLKAKGSVWFWTDSTCVLQWIRSPPGTWTTFVANRVAKIQALTEGSEWNHVPGLSNPADLISRGIAPKDI
VENRRWWHGPDWLMEAPEEWPKGVGYSPEEDLERRRNMLICASSEEKEFISDYVARFSSLSKLIRTTAFALRFLGNLRCS
KDQKRTGFLTTEELEEAERVIIRKIQEGSFVEELKNLSSGSVVGRKSPLRWFHPRIDGNGILRVGGRLEHSDETFQVKHP
MVLPARHPFTELLFRYYHDKHLHAGPQLLLGTVRQRYWPLGGRNIARKVVRQCLRCFRIKPSAIQQQMGELPAARVTVSR
PFSKTGVDYFGPVYLRAGRGRQPTKAYVAIFVCMATKAVHMELVSDLSTERFLQALRRFIARRGRCSDIFSDNGTNFVGA
SNQLRELAKLLKEKEHREKVSKECANEGIYWHFNPPNAPHFGGLWEAAVRSAKFHLLRVLGGNPVTHEDFVTLLAQVEAC
MNSRPLTALSNDPQDLEALTPAHFLTGGSLLAMHDANLGDVQINRLSRWQLVQRQLQDFWKRWRKEYLSQLQGRMKNWQP
AVKMQIGQLVVVVDANQPATQWKMGRIQELHPGDDGVTRVVTVRTSTGVLKRPVARLCLLPLKRSEDTSDRV
>CER15_CE#LTR/Pao 4381-10795 via tfasty with BEL-10_NV, 1 frameshift and 1 stopcodon. [Caenorhabditis elegans]
MAILNATLKSQKQRIGRGATIAKKTLKVSQELLVDLKAGIFQPELKRDEILKTRADVVGILEFLENIENWIAEEIQQDAE
TSANVELVAQYTKSMKEHATLKEYEVLAKRLKLMKTGLEDVIKNQEDWQSLPATPIGNNDGDDQDNDPMSDEAPTVTGLN
QESDQVGPNQVTLNMELILASIKSLEDRFKTMESIQGTAKATKCGKVGSTTKSNSANTKGKGSGSRKKDYTQSEDSSEDS
DSSQNSSKYLTDAFEVSERSDTSDSEEESKARTSRNTRPQKRYLKMKLQEPKKFDGVNKLEYEEWKVIFMEGYGENPDLT
KKSKLIQLKGCVTGRAQSLLNGLQITDKNYKVAWKILDHNFLSNARPLDEIEKRFRNAKIDQKNYDQMKLDVGTITSLVY
DMKHRGMNVDSPWIYQSIIGKLPAHIAEDILIKTQSSKFNGEFHKVERWIDRKINAKMAINEYRNEKKGPKDFELENDVN
QLEAKNEKGNPKENGQQGFRKEGGHPGQKGHNKSTCRFHNKGEDNGHPFWKCSKSGEEILDIAVKQGLCFMCFSNKHISD
ECRRDKLKCQKCKRGHNTIIHGPVGKWFRANQKPRQEPQHGTTSQEHTDTFSNRQAQTALARASLIRDPLEQNLIAPKGA
QQSAAYAADKEPDNTRALCEGGDDIEEHEISALDAEFSRKGEMAYLLLKTTNGNELIGLIDTGANCCLISEESAKRNNLV
VEKTVRMRLKGVGSDDVFVSNIYKVPFNNKILYAKSYNKLTSKVRTSKLEKFEIQILEQMGKDTSALEKLHNSNGKIIDM
ILGTDIIWQLFEEAEFKRVSNEKTLVCTSLGEFIIPTSFRTLRGEEMGEEVYTSEAWIEEEFDSCNQITEMEEDEADLSS
TALEKMWRLNVLGLETPELAKEEQSHMEDVLAEFQKTVTWENGNLLVKLPMNGSEIHLENNLPIAMQRLKNQFYKLTxSP
EVIKEYYDIIQKQLKSGFVEVCSDIPPKNRCFYIPHMTVVKQDSNTTKLRMVLDASSHMKNKLSLNQCIKSSPSIIKLIT
GILMRCRAGKFYMTSDIEKAFHQIRLQKDDRDFTRFVWVKDPSKGPVTDNFITYRFTRIPFGLSCSPYLLAASILTYMEK
YPAEINKHLEQNCYVDNMMFTTNNESELINMYKESKEAAKKWGMNLREYQTNSESTSSAIPEMDRAPQKPNKILSHIFDA
QKDTMTLKIPVPPKDQRPTKRELQSFLAKFYDPMGILTPLTVRLKLFLQSLWPTKINWKQKIPEGTEKIWETIRKQFQHQ
QFTFARTLTQNFDFIRSKLIIFSDASKNSYGLAAYIRFEYPDKTVKTSLIMGKSRVKPLNKDVRYTIPRLELLALATGTN
CAIYIQKELHTNIPFESVEFFSDSMIALAWTTTQKPLKIFVSHQVQLIKENCKMLGDLEINHKLHYVRTEDNPADMTTRG
KSSNELFESKLWFQGPEFLNKSETEWPQQWTDNSTIPKCIANEIDEETSGEKKKRSIGKAEEYMINLSTATEENEETLPF
TSTVPYEKTNSLFKLIRSTKAVMKAASLFRKNAGKQCTGKLLRNFSAAKDGVEGNEDRRKSALYYLIIDHYKDADSKSEF
KIAADLKPMMDNFGLIRHNTRLDKSNLPRDTKFPIILLRDHKLTEMIMRDIHWRNKHIGTEQLFAECRKTYWIPKGRQLA
RKIVSSCTVCRRAAGRKYKYPDIPPLPECRVQKSRPFERIGLDYFGPIYYKANGVERKCWTLICTCLVTRNIHLELVSDN
GTVEFILAMRRFFARRGTPRKVLLDNARTFKLGEKIFNGDIRRLGSECEAFTTFLDQNPMNWDFITPLSPWKGVIYERLI
AIVKRLLYSSGDTAKLNFVQLFTTMTEIEAIVNSRPITRNSEKLTDSPVIRPADFLNPGVTLGILQDDVIVDEDSVGKVE
QLARLHLAKLNNHLEGLWKDWGELYLTQLKEAHKQNRQYTRVEPKIGHIVIVEEKLLPRHKWLLGLISALHTAPNGDVRT
VTIRYNNKDLVRSVNQLVPIEMNEGLQDIEINPQAEAASKTEPSNPKNSENSEQTEHKSSNDECAQPKIEEVDTESTDEC
DLRERLPRKAKLGVTYYNCDLVSTNIASDIIGNKDSMIPVENPLDQDVPSGHLFGAGS
>Helitron4_rpa2#RC/Helitron ATRPA4H2p; multiple exons [Arabidopsis]
MADTNYIRDLSLHRNNHVLYVKILSIWDNQSMIFGTPTTMILCDVKGTRIDARVPWGDYLNNFKPSLFEGKWYYIADFRL
KRATSIPKYSSFNYEIEFMWHTKMWPVSDRSDESSLQFIHADEVESESEDYVTDAIGVISSVSTVARFPYVCREGETDYE
ARYVTFTIRDNLDRIITCVARGSACESFLTKFYRLIGMKTYNYEPITTVLRFFRASNFKGSKALISEHGCSRIFIEESFP
DFDVTRYINWFACEDDGSVEGKIEYVVEN
>Helitron4_rpa1#RC/Helitron ATRPA4H1p; multiple exons [Arabidopsis]
MSLPLGLTYLSDVKPFKTNWRVRVKILHLWRQTKDASGETLDVIICDENGSKMQITIRKHYIGKFHRSIKVGDWKIIDNF
TLSPSTGKYKISSLSYRMGFNHNTDVIKCDPVSDSVFLDLADFEGVKTESYDENVLIGEISITSAFDVSEVIINPVHVPE
VELFVKSLPSDGLALTIQDNYVNRDIIKVKSDNFFDYPAKTIVDLLHGRDVGQWRILGSIFAIDTDWGWFYFGCPKCNRK
TELVKESTSTGKMVKTPMKPKFWCDKCQESITNVEARYKLHVRVMDQTAEIKLMVFENNATKLIGKTSEELVDGQYEEIE
DPTIIPDVITNLCGKTFHFLVSVEKANIYGGKDIYKVTKVHFGTDIAKEESGLLEDTQYDPSTIGSEEQGQLMLTNSSEN
CSDATNNELSTPSSKRGSAELSDMADQSSTTKKLCSRVNSENGDDEIGTNVIIENADEVKVISDDAGSLLIEGVVKEIEP
QTSKAKGSTKLLRLWNWPPNYFGEEPTMILVDEKGHRIDALSPLHAYKEEMISTLREGKWYLLSNFEVVVANPLERFSSH
VFQIKFLRKTTMEHVAPKIRCHFIECFDFYRIKNAAPIQKKFVVDAMGVIESVSPIGKIPWVAREWESDFASRYLTFTIK
DTLHQYMKCVAVGSSCEEFERKWYKKISDPNFKMEPVMIILRFWKILEFEGNPCLISVYGCSKVHIDPNFRGIDKNNYLR
NFAGSDDEDDDIFMESVESNF
>Helitron-1_DR_hel#RC/Helitron 13714-21569 via tfasty with Helentron5, 1 frameshift. (ORF starts at M from pos 12740 but contains simple repeat). [Danio rerio]
IQGSFHQGDERFGFNRNRQCAVNSITAVMMSVLKHVQTWTTDDLNAVLLHGDKLYTSMCQQGRLMTIYSEDMFLLPELPT
VHTLYDTNLSIKYSESLSGVVGVDVYDDSLRDVCMSIEEALQRALVQSDACLLNIRDNICAVIKVESEFAVVDSHSRNGK
GMAEYDNGRSIVVYCPDIHMLFAHVVNLAMSLNAQGTPFEVTGLKATIISKSTCAARGYKPGQQCIITHVSPAESDVQCC
ILDSVKQRDLNKPAFLEKVIQMQSDSSKKLQQIESKLTHVSKFPGNILMSDVIIGNTENTQFNFKPLTWEEQNALCQRLH
LINERVHVQVANMCSLGVPCKTKSIKGDGNCLFRSIADALCGNQEKHLIIRRAVVKHLEANSSQFLRYIGEEYRSVKDYL
TQSKMYYSGSWGSHVELFCAANLLKINLMTFNVDRWNAYVPNNELFTENSIYLKHCNGNHYEVVTCVKNGSQENVCAEAC
NIGVFHQSITCSLRKRKLNYTPAQCKRQKEHDRYHSDSCFRQKKIENLKFKYCEDSNYKQRKIQNTKTKYCEDSDYRQRR
IDNSKIRYCEDSDYRQKKIDNSKIKYCEDSDYRQRKIDKSKIKYNEDSDYKEKKLHNLQCKYRNDTKLQQLKCENSKRKY
SRNVSFQTFVRQYSQTKYKSNKVFRESVCEYSKNKYHRNPTFKASVCEYSKNKYHKNPSFKARVCDYSKNKYHKNPSFKA
RVCDYSKNKYHKNPSFKARVCDYSKNKYHKNPSFKARVCDYSKNKYHKNPSFKARVCDYSKNKYHKNPLFKARVCEYSKN
KYHKNPSFKARVCEYSKNKYHLNPSFKARVCEYSKNKYCRNMNFKAKVCEYSKKKYHEDEMFRMRKIKKRSEDYVKQRER
QKDINFAINNFCHEVSSGPEFVCCVCHRLLFRKQVLECRKDCYDIRGQQISDLAETCITTKYLHKCSSECENLCHLSGYA
ASKLWICYTCHRKILGGKLPEESIANNMHLVDIPKELKGLNSLEGHLIALNIPFMKLLCLPRGKQKGCHGPVVCVPVNTT
DVSNILPRNECDDHMIRIKLKRKLTYKGHYEYKYVNTDHVRHALSYLVRHNKWYKDVEFNEQWVNSMNETDDLDKDANDF
VVDEHHETDKNEDDKEEDITYIKEQSGLLSDTCLQPVDLGSEIIDQHFHDVLNIAPSEGNSPVRLLSDKANEAKCFPILY
PTGGPTFHDERQEKITLSRYLNARILNADGRFAQSTDFIFYAQYLSEVDQIVSNVSIAMRKGSEQDCLNVTSNMLTNCDS
LQKILHYDEGYKFLRPVRGTPPYWMSTQKDLFALIRQLGIPTFFASFSSADLRWPEMINTILKQEGKQINADDLDWSEKC
GLLRRNPVTAARMFDHRWHCFLKNVIMSPANPIGKIKDYFYRVEFQQRGSPHVHCLFWVENAPKLNDNDSNNDHVVADFI
DTYITCETPTESDNVLYETVNSVQKHSTRHSKTCRKKNTVCRFNFPRPPSSRTFITRTYNADNLKGKEGESLANKIIKKV
KGGLNSGVNFDSVDAFFSSIGINQTMFEQAYNKCSKKKTIVLKRNPKDVWVNQYNRDLLQAWQGNMDIQYITDAYSVVVY
ILTYITKAEQEMGLLLQRAQNEALNGNLEAKTSLKRLGTIYLHNREISAQESVYRLTGMHLKECSRKVQFIPVGQNPVKM
SLPLHLLRNQAENVQSDDKSSFWMRNVIDRYKNRPQKEPLKDLCLASFCSEYRILTKSEVMSQNKKAENKIIKLNNQNGY
VKRRTRTEPAVVRYPRFSPTKDAEKYYHSLLQLFLPHYNDSDLKPIKYDTYEEFYNTGIIQYSSEMKEVKYIVDENRELF
EKESDKIDKAKQLLDQGVDLEDAWAEICPETERQRHECNELMKDKILPDEDDHQELFPDLIGNPQTGCTIESNHTTMPRN
DALLLLRSLNEQQSAVFYKVRNWCLQKILGKNPDPFRIFLTGGAGTGKSHLIKAIHYETTRLLSQLCENPDDIVVLLTAS
TGVAAYNIGAATIHNTFSIGSNVRLPYQPLSDDKINTLRTKLGSLQILIIDEVSMVDHRLLSYIHGRLRQIKQTGEYLFG
KVSLFAVGDFYQLPAVKGTSLYADTKGVNLWESNFEVAELSKVVRQQDPTFAEMLNRLRVRKKNESISPTDIATLRNCET
GDTCNNLHIYATNAEVDKYNIERLHECCQQIISINAQDYIKNAKTGRMERKVGFHTKVFNSCLSACVSLGIGARVMLKKN
IDVADGLVNGAFGTVVHITQSQKNDDDFPTAIHVEFDNPNVGKIQRSKTRQRFSANSTLIKVEEDQVTNDGGIRRQFPLR
LAYACTVHKVQGLTVDKAVVSLKKIFTAGQAYVALSRVRSLSGLIIEDFQESVIFCNEKIELTMKSMQKLVLDKYNSTKS
VGTFRIALLNIQSLRAHFQDLLAHTVLMNADCICLTETWLYENDELELQIPEFVFNHNPRSKCYDNKCVVSAELKHQRGG
GVGMYCSEKIECHIFTPELWNLECLYFTVPHVNLKAAVLYRPSSYKIDVFRQHILHIIEELEKHSGQKIIMGDFNDDIFT
SSMTMKLMEQHGYTQHVQRPTTEKGTLIDHVYTKQMEHIIVDVVQTYYSFHQAILISFL
>Helitron-2_HM#RC/Helitron 2176-6622 via tfasty with HELIBAT1_hel, 1 frameshift.  [Hydra magnipapillata]
MSNNLRNEIIRLRQNERRQARRAEINRRRNERDEPRRAEINRRRIERDEPRRAEINRRRIERDEPRRAEINRRRIERDEP
RRAEINCNQNERNQARRELNRYNMHRIARNNIAIESNYLGELNHNCQYCSAKKFLNETHFLCCHSGKVVLAPLSLYPPLL
TGLMTGNHVDHAVNQNFFKHIRSYNSSLSFASFTAEIAPPSNNGPFCFRVCGQILHRVGNLRPAEGCLPKYCQLYIYDPN
AAVSFRMEQPGNDGCIHELMQLLQTLINQENPFALAFKNMAEVEDEEIRQAALEGRPTSVVRMSLLEGHDRRRYNLPSHE
EVAIVFVGDDGAPPASREIVIYPRGQPLRTISSMSANLDPLVYPIFFPRGDAGWHNQLEHNPDRATRVRNHVTLSQYYNY
RLAVRQTFSPIFYGKKLFQQYVVDAYVKVEGQRLAFIRNNQNKLRSEQYDALHEHVINRANDLNVRPGRVVILPSSYVGS
PRALKENFEDAMAVIKKYGKPDLFITFTCNPKWREIVENLNPGQTANDRPDLVCRVFKMKLKFFLEDIFKHGVLGKVVSH
VQVIEFQKRGLPHVHILLHFVNADKLETAEDIDSLISAEIPDPAVDPELFEIIKSCMIHGPCGILNPNSPCMKDGKCTKK
FPKEFNPHTVAIFNGYPRYRRVDNGRIVNIKGNQVDNRWVVPYNPWLSKKYQAHINVEACMTIKSVKYLYKYIYKGHDCA
NVVINEQVNHDEINTFLNCRYVSAPEALWRIFEYSLSDMSHNIIRLQVHLPDNQMIYFVEGEESEEQAALDRAAQRDTHL
TAWFKLNVENEQARHYPYVEIPYHFVFDSKHCKWKVRQRGSNKVIVRMYKVSPIGEIFYLRMLLLHVRGAVSFEDLRTVN
GTVFNTFREACSQLGLLQDDAEWRNTLTEAAATRLPNQIRQLFSIILTFCEPDDPLNLWNAFKDFMMEDYIHHSMPPIIA
EQAALRQIESIINQNGKTLADFNLPTLDEFLDYVPQNEEEDVQVLIDEANRVRPLLNDNQRQIADAILSALSEQPNNENK
QSRLFFMDGPAGCGKTFTYNYLIAETSSRHIITATAAWTGIAATLLKKGCTLHGLFKLPVPILENSTCNVTPNSIHGKFL
RQVSLYLLDEASMIPKHALNAIDKLLQDVCNNKFPFGGKVILMGGDFRQILPVVKRGQPADIVEACIKCSQHWQYVQRFS
LTENMRVQAEEEEFSQWLLKLGSGTLPLKADGSFRGCIEIPEQCLLGENESLVDKIFGVAEEDDYAKRAILTPNNVDSLA
INEEVLDRLPGDVKVYLSADTIETDDLNEINNFPVEFLNSLTPSGMPVHCLKLKIGAVIMLLRNLDLKAGLCNGTRLIVR
ALQNNYIDGQVLTGVSVGKRVFVPRVQLTQSDSNLPFTLKRRQFPVRLAYSMTINKSQGQTFDKVGIYLKNPCFSHGQLY
VACSRTRSFNTLFFKIDEHSLQGMSFNKCYTNNVVFTNVLNL
>Helitron-1_DR_rpa#RC/Helitron 3828-7847 GENSCAN_predicted_peptide_1|374_aa (2 introns) [Danio rerio]
MADSKRKCLEVEGYVHDVSEVLQGKSSNVRYFTALLQEANQNSRVVVFDVQKHNSFQCAARDRSPVKLSFVEHSPSKQHN
NTNDLLVKSGTKVSVLRRLEFAREDGLTSRAPVRSLSDIQRDVREYQRVTVKVKVLRMLQDKESVVRGQKLRRKSVVVAD
SSDLILLSLWGDHVMTIGEWYILTNVSVRVFKGMTSLSTTMQTSLSVVENSGPAKEFVEEDVTSVVGEIVKAEVKVDHFC
PKHHLLENINVATHMTRCTKCDSFCKTSKSRVEMRGHIGITVDFVQRRIPLDDAEIRELLNLNGRENLDSHALAAKLLVH
DDLKVEMWREFITRVLFVKKDDAVDAPKDGSDEAAAAVSNGEKDEFDNLDSLFD
>Helitron3_OS_hel#RC/Helitron OSHEL3p; 3077-7479; multiple exons [Oryza sativa]
MQLLMLTNNAALCPERSYYGGPSHECPYCGAVFWYQERVKRDSAVSQRRIVYNLCCRGGKISLPELKYPPDMLAKLLKFD
GDAQSKRFLRQIRSYNSLFAFTSLGADVEKSINNGTAPYVFKINGVVHHRIGSLLPQRGAKPKFAQLYIYDTENETANRI
NIFDRENSNDEPDPSIVTRLGAMLDQHNDLVKSFRYARDRLNEHGNEQIALRLLGCNAKDEVQYNLPTSGEIAGIIVGDS
SNDAYTYDVVVQSSDNRLRQVSALHPSYMALQYPLFFPYGERGFHLGIKYTDFPSIAGTSRRYVTMLEYYRYRFHYRLNK
PNPYTCCGRLSDSICVDAYSTVEGSRLKFIHDHQPELRSECVQGIADAIDHGLESGDSVGKKYVLPSSFTGGRRYMVQNY
QDAMAVCRVFGSPDLFVTFTCNSKWQEIIRYXGGKDLRSCAGRXTSSRHVFSYIILSCXYCSCXYPCFHVVLYTVEFQKR
GLPHIHCIMWRAAADAEFSATAVDSLICAEIPDVFSDPLGYALVDEFMIHGPCGDKNKSCVCMKNGHCSKHFPKGFQEET
TMDEFGFTVYRRRNDGRYVVKNGIKLDNRWVVPYNMKLLKKYQAHINVESCNKSNMIKYLFKYITKGGDRTKLYFETTGN
TPNKTVDGTVLPPNEIDEYINARFLSTCEAFWRAFEFDIHYRVPAVERLPIHLPNMNFVQYKKGTDLKKLLDSPAAKKTM
LTEWFECNKKHPNARTLTYCDFPKQWTWDNSARCWRPRTPVEKIGRIYYVSPAAGELYYLRMLLMTVKGAKSYADVRTFE
GTVYPTFRQACESRGLLENDNDWHLLFDEAIVSASSLQLRQLFVTVVMFCSVGNVRSLFDKYWLYFTDDIQHRLRTALSN
PAYVVPHDRLLSLLIKELHSAFANSGGNIDDYDLPRSTIHSDDEFGNRMVNEELALDTAALAAHASLMIPXLNSEQQKIF
DTIVSRVSESRPGFFFVYGHGGTGKTFLWNVLISKIRSEGNIVLAVASSGVASLLLPRGRTAHSRFKIPIDIDENSICSI
KRGTMLAELIQKTSLIIWDEAPMTHRRCFEALDRTLRDLLSEHNPSNSVLPFGGKVVVLGGDFRQILPVIKKGTHNSIVD
ASITNSPLWQHVVLLKLTVNMRLFQSGLSEGHRHDLEQFARWVLALGDGMLPVSKRIDESEATWIDIPDDLLIRASDDKI
YSIDTQIRAIVCPNNLTVDEINDYMVAMIPGEMKEYLSCDTISKTSEHIPDFDILYPTEFLNSINANNFPTHRLALKKGA
TVMLLRNLNQSLGLCNGTRLLVLSLGHRLLECVILTGSNVGERAFIPRIVLSTTSSKWPFVLQRRQFPVRVCYAMTINKS
QGQTLSRVGVYLKKAVFTHGQLYVAVSRSTSRDGLRILIEDDDGACSSKTRNVVYHEVLEAVRLMVYSRLLIST
>ROO#LTR/Pao 855-7937 [Drosophila fruit fly genus]
MMSEKTIQFLKKQSEIILEIRKLEVKPTLTDVEILKLNELQKCFIANHSNLLKIGVVDHEYFNAKQYDLIMMVLEKIKNK
NEKIKGESVENTFPKSNTVPKSNPPPTLNLEMRGHPEKEGIAQNNALKVEQAFRNNVGQFRVYLEDTSKLIDSSPDFLKI
RKNKIEFLWHKIDNLIEQVNSHFESSLFEEEISELEFDKQNILTAINSRLSGTINKAEMSTVVKAEELPTLPKIQIPTFF
GDSKEWDLFNELFTELIHVREDLSPSLKFNYLKSALKGEARNVVTHLLLGSGENYEATWEFLTKRYENKRNIFSDHMNRL
MDMPNLNLESNKQIKTFIDTINESIYIIKLKAQLPEDVDAIFAHIILRKFNKESLNLYESHVKKTKEIQALSDVMDFLEQ
RLNSISSFSQEVKPVKKMINNNKNKNYSDNCAYCKLPGHYLIQCHKFKIMNPAERSDWVRKNGICLRCLRHPFGKKCISE
QLCSTCRKPHHTLLHFAGHNPEKVNTCRTTGQALLATALIQVKSRYGGFEQLRALIDSGSQSTIISEESAQILKLKKFRS
HTEISGVSSTGTCISKHKAVISIRNSPKNLEIEAIILPKLMKALPVNTINVDQKKWKNFKLADPDFNKPGRIDLIIGADV
YTHILQNGVIKIDGLLGQKTDFGWIVSGCKKSKGKETIVATTIEIKELDRYWEVEEEEKDDIESEICENKFIKTTKKDSD
GRYIVSIPFKEDVTLGDSKKQAIARYMNLEKKLKRNEKLKVDYTKFMNEYMDLGHMIEVSDEGKYFLPHQAVIRDSSLTT
KLRVVFDASAKTTNNKSLNDIMWVGPRVQKDIFDIIIKWRKWEFVVSADIEKMYRQIKIDNNDQKYQYILWRNSPKEKIK
TYKLTTVTYGTASAPYLATRVLVDIADKCKNQVISAIIRNDFYMDDLMTGADSVEEANKLITLIPHELQKVGFNLRKWIS
NNSKILTTVEDTGDNKVLNIIENECVKTLGLKWEPQKDLFKFSVNCNDESKNINKRVVLSTLAKIFDPLGWLAPVTVSGK
LFIQKLWINKSEWDQELSIEDKNYWEKYKENLLLLENIRIPRWINSNSSSVIQIHGFADASEKAYAAVVYAKVGPHVNII
ASKSRVNPIKNRKTIPKLELCAAHLLSELIQRLKGSIDNIMEIYAWSDSTITLAWINSGQSKIKFIKRRTDDIRKLKNTE
WNHVKSEDNPADLASRGVDSNQLINCDFWWKGPKWLADPKELWPRQQSVEEPVLINTVLNDKIDDPIYELIERYSSIEKL
IRIIAYINRFVQMKTRNKAYSSIISVKEIRIAETVVIKKQQEYQFRQEIKCLKIKKEIKTNNKILSLNPFLDKDGVLRVG
GRLQNSNAEFNVKHPIILEKCHLTSLLIKNAHKETLHGGINLMRNYIQRKYWIFGLKNSLKKYLRECVTCARYKQNTAQQ
IMGNLPKYRVTMTFPFLNTGIDYAGPYYVKCSKNRGQKTFKGYVAVFVCMATKAIHLEMVSDLTSDAFLAALRRFIARRG
KCSNIYSDNGTNFVGAARKLDQELFNAIQENITIAAQLEKDRIDWHFIPPAGPHFGGIWEAGVKSMKYHLKRIIGDTILT
YEEMSTLLCQIEACLNSRPLYTIVSEKDQQEVLTPGHFLIGRPPLEIVEPMEDEKIGNLDRWRLIQKMKKDFWVKWKSEY
LHTLQQRNKWKKEIPNIEEGQIVLLKDENCHPARWPLGKVEKVHKGNDDKVRVAKVKMQEGYITRPITKICPLEGIKSVD
KNEADQEPKRRTRATSGMSKIGIIMAMLLFVLSCQVSSALPKDIAPRYSIDKINKTSAIYLDPLGDVEIVSTSWNLVIYY
KMDPYFKMLTKGNALIQSMRKVCERLHSFEEQCSLVLDNMQSQLSELEENNKLFMIQSRSRSKRAPFEFMGSLYHILFGI
MDEDDREQLEENMKNLLDNQNNLDKLIQKQTSVVDSTSNLLKRTTEDVNSNFRSMQIRIENMTEVLKENYYVYKESIKFF
MITKQLHSLIEEGEKIQAGIISLLIDINHGRLNTNILRPNQLKKEIAKIQQSLSENLVIPGKRSGTELKEVYTLLTARGL
FIDDKLIISAKVPLFSRHPSKLFRLIPVPIRNEDRIIMVHTTSEYLIYNFEIDSYHIMTEATLNQCQKWQLNKRICKGSW
PWNSANDNACEIQPLKPDKAANCIYKTVVDSKSYWVELEKKSSWLFKVPANSKVRLQCTGSQIELFDLPQQGVLSIAPYC
TARTDDKILVAHHNIQSESEELLSTPYIGEVSEAPKIIWDPLKLSILNHTEEFERLNNEIKFMKENHQKLKDLHFHHISG
HAGLIIALILMIVLIIYFIRKCAVQQRMQAITFAGPLPVL
>DIVER2_pol#LTR/Pao 2465-4146 Fragment. Preceded by 380 AA gap and poor sequence in consensus. Via tfasty with BEL13_AG, 2 frameshifts. [Drosophila fruit fly genus]
WRYVPTALNPADILSRGSLPSELSESHSPAYLTEPERDWPKAVCPDKPVLELRRSVFVVKSPYVDVIASSKFANSYPSLQ
RVFAYIYKFCNGIRHPGLTVAHIQEGTHMMLRLVQRAQLWEDLQSLKTLGRVSSSSPISSLSPFLDQFGLLRVGGRLWNS
SLDFYGRHPKILPRSHSVTLAIISHYHEINLHAGPRALLGAIRSQYWPIGGRKTVTKAVNRCIRCFRIMPRLIEHIMADL
PKERLEGSHAFEVAGIDFCGPFFHKSDTRNKPAVKCYVCVFICFATKAVHLELIKDLSTVAFLCGLKRFICTRRKPKQIW
SDNATNFVGAKNKLLELRRLFLSSEHQGSVQNFCLSETIDWRFIPPRSPHFGGLWEAAVKTAKHHFYRAVGTAVLTFDEL
RTLVCHISAVINSRPLVPISENPADLDVLTPAHFLNGGPPSSFDEPDITGLNYNRLDSWQRISFLQQIFWSRWKEEYLTL
LQQRSKWRTPKPGVAVDNVVLVKDENLPPMRWPLARVMQLIPGRDGVARVAELRTASGVIRRAVNKLCLLPLEDSVGSQA
SNGGR
>ROOA#LTR/Pao 879-5350 via tfasty with MAX, 1 frameshift. [Drosophila fruit fly genus]
MKLEQFKSSNYDVPELPKVDLPTFNGNAKEWPSFYELIDSRKDLSNTRKLGYLRACLKGEAQMVVSHLITGSAASYTAAW
ELICKRYENSRKIFSQHFNKLMELECLLPHDEKNLRKFLDTATESIFIIKEKGKIESSADVILAENFPPDAIQLYEQHVK
KARASLQDVLEFIEQQYNSVNAITKNTAQLATRKVQVRSCAFCSKDGHDMIKCLKFKAQSIEKRKEFVQKNSMCLRCFGK
HNAIDCRKEITCNRCSKGHNSLLHEDTKRSINSNSLKQGQDTLLATAVVLVKNKAGGYNELRALIDGGSQKTLISEEAAQ
ILRIPRVRNTIEVEGISQTTQLSKNCDHLTIKKNIPSSFKTSTEALVLPTLHRALPSKMFDIDINKEWKGYRLADPRFNE
PSRIDMVIGVDLFPLIMMEKIKTVNGILGQKTRFGWIVSGNITRAAKQKIISATTTINLKDLERFWELEDEADETITDNA
ECERKFQETTVTNEEGRFVVSIPFHQLHHKEAKLGDSRKQAMARLMQMEKKNRAAYNEFFKETLKMGHLESVKTTGQGKY
YLPHQAIIRPGSLTTKLRVVFDASAKTTNGLSLNDVIIAGPKIQKDIFDILINWRKWQYVMVADIEKSYRQIKVAEKDQE
YQYILWRDDPKLPISEFKLTTVTYGTSAAPFLAVRCLRELADRFCQEDSVLAETIRDDFYMDDIITGGDTVNECYELQRK
SRQVMEKVGMHLRKWVANDERILADIQDDGAMEKICIEENESIKTLGLQWDPKKDTFTFLAENPMLTRITKRLVLSQLSR
IFDPLGWLAPVTIQGKCFIQELWKLPMTWDVELESNLANWWMEYAKGLSYLEEISISRWTGCSKGIMELHGFCDASEKAY
AAAVYTKVGGRVTLLAAKSKVNPIKNRKTIPKLELCAAHLLAKLLAKVQAIWSNKITTHAWSDSQITIAWIPNKRSKDKF
VRTREEEINKLIPNVKWNYVKSKDNPADVASRGISPQALKICEIWWRGPNWLAIDAQHWPTQKESEIVVVSTLIKSEYLQ
NHLLSKYSSIDKLLRVMAYVLRFITKLRGKSQQPSHLTAEELKLAKIAVVKIQQQLDFGHEVRLLKNKRPLDPKSKLQAL
NPFLDSDGVLRVGGRLQNAMIPYNVKHPIILDKSHLTWLIAKDAHKETLHGGINIMRTYIQREFWIFGIQNSLKKYLREC
IVCIRYKQEMSSQLMGNLPVYRVTTDYSFQNTGIDYARPFQIRCSKARGQKTYKGYICVFVCMATKAIHLEAVSDLSSDK
FLEALRRFFARRGKSENLYSDNGTNFVGASRVLDKEFVAAIKNNNELAPTLEKEGIKWHFIPTGSPHMGCLSESGVKSVK
HHLKRVICENSFTYEEFASLLCQIEAVLNSRPLVTVRSENDGQYILPPGHFLVGRPLIGAPEHFGESKTISSLDRWKLIQ
RIRGDFWKKWKEEYLVSLQQRTKWRQEKPNLKEGQLVLIKHENTHPARWPA
>TATE_orf3#LTR/Tate 3727-6588 [Leishmania genus]
MELGEARHSRTPLAMVDANQVDELGTDAHALSGGMHRLDSVDRKGPQMEVGNHREGLCRGGGCAARPAALLDADAGYSPS
GRSRVAKRFWHGAALHEGVGAGCASLRFASTGREDLQTAPVRPSTRRAVPRHDVGIRSTSVRHFHAPSEGRDAVPGXIDG
YIREGHADDPQGKGCQNTWPIPDPIDANEGPRSDAAGDAGREKTIRGAFLTTRGGAAGADRPGGANRDARCTAALDPERR
APLYGGSGCPVEGPDDDFRAREAGHAAALSWVWPAAYGGGRDRKGQRRKSAIPDPLEAAASVFRFRSQESSCANLGIAPQ
EVSAMVDQMSGFIQVLTERPALVKQWPLHLKRNTPLDMDTVLAMPTKRASTKRFLQRIQCFLDPSFYDGLRTSRTIKKCV
LTTAEIQQAVEMGKFEPCPISDIGAQVQLPEGMHGVNVFTVPELKGRRRLITEPLLNRVIPKHHVPRVHYDTRLGRRQRL
RYARYMLQIDFEAYYDAIPIAATLRNKFVFRARHDGRYYRLRTLPTGARWSVAVGQAVTWTIVDIDTPVTITTLIDNILV
AAREGQEREFVLAVRTVVARIKAANLMTSPNRDELEAMSDEEILQLASANTVFLGEEYTWNGRERLIRNSVKTVAKLKLA
LQKTSHTIRSLASLISLIFFALHTTQMNPARAFKLLRAYRGIYRLTFRGYDWDDAVPYIDSSVARSLQEIGGALVQNPWW
KISDERHPTTDEATYDAVAFTDASLEGWGAVLHLRDAGATEMWTYRQRWTEDLERQLGGDDGEAERVLEKLRQYQLRRRV
RSGGRFEDPDLQADRFQARYSAHAEPRAAQLMLRHLVEHHRVPNGARIALATDHRAIVIAQKHLNGFGGIGRGYALNKLF
EYTYDLWYNRGIDVVFFYVEGARNPADAYSRHFGVDATGSLEVHRVEPFGVPFLRHTWCPLCEERRREEGGEI
>SACI-6#LTR/Pao 328-3933  fragment [Schistosoma mansoni]
METRSKRQKENDELDGKISRAVCGMYDVNDDKCDDITLNSMSSSQLSTSRLKLDKALLRKKNLKKRLELERQLKMLDLQE
EVDMAESECNVIKDDERLPVDKCEINAKVENYLNGETGGNNHSGEVCNISKIDWVDELRDTLHTLVGNMALPKIDMMYFD
GQPGQYYCFISQFNSLIESKLSDKGQLLSYLLYYRKGKARTAIESCISLPSHLGYDRAKRILYDLFGKEHLVARELIAEL
LNHKSVGRSADVLTDFAIKLRNVCITLKEMGYMSDVNSTANLEIIVSCLPLGLQNKWAEVADKIMMHGKEPSFEEFVAFV
EERARIARTRYGRLVQCNSRFVKGNSEGQADRSRFHAIRRDPNDSVKVSSCAICLGDHEATDCPRLAKMSVRERRQEIRR
RGLCYLCLRKGHIAMSCNSGFKCDVENCKVRHNSLLHIDGTDNYVMNLAKDGNSSRVCLGIVPVRLYGPKGCLETYALLD
SGSDTSLVCEELINQLGIEGKETSIRVATVNGTTNCECLEVNLEVFSLDERGSIRINKVYTTKKLPIDHAAPLTELQLKR
WKHLKDITLPRLQSNFVGILIGCDAPDAHWVLEQRLGDRKHPFAVRTHLGWMIVGPKGAPRSLYQVQWCHCSNDILRDIE
RLYDHEFEDTDTFRNGYSVEDKRALEIVSSSFKLEGGHSQVGLPWKYDRPSLPNNLELAERRLECLRKRFMKDNSLLQKY
QAVMNKQLSKSYIIEASKEGFDRDAVCWYIPHHPVINPKKPGKLRIVFDCAAVYQGFSLNDQLLRGPNSVNSLLGVLLRF
RLGNVALAADIEEMFLQVRIPRQDRGAFRLLWWEDGDIKRTAKARVSLLKVQTIPRLELTAAVLAARMGSQLQSELDIKF
AEVKFWTDSTIVLHYIRNEKSQFKTFIANRISTIHSLTKVDQWRFVPSKENIADFASRGVKFNTDDVKVWEEGPRFLKKP
KECWPAVNIQGPEPHLLELKKAMSTNVMVEESTVGIDWHFSPPAASHWGGVWERMIRSVRRVLGALVKEQPLTDECLETF
MIEAERIINSRPLVPVTDDSSDLDAITPAKLLLLRENVTELTNVLSNDRYSKRWKQANYLAQVFWRRWSKEYVSLLQRRY
KWTQLERNIREGDLVMICSEFSEKNKWPLGLVQRVLPSKNGLVRQVELRTRKGILVRDIRKLCLLEAIDGRYLLGSLGVL
V
>Gypsy-23_ST#LTR/Gypsy 1913-6409 [Solanum tuberosum]
MPNTRGRRARAPEEQPTNGDLRDALTLFAQAMANQANHGAQAPQAPTPASRVRDFVRMNPPEFYGSKLDEDPQEFIDEVH
KILAIMGVRSEDKAELAAYQLKGVAQIWYNQWKEEKGANYVVPWEEFKTAFLNRFFPLELREAKLVEFMNLKQGSMSVRE
YALKFNQLSRYAPHLVADSRSRMNKFVMGVSDLVSEECRSAMLISDMDLSRLMVYAEQMEEEKLRKRRGHEAKRARFEGK
FQSRTGGRFHQGQGSSHALHKGFANDVPRAQGVRGMGPIDVCPKCGKGHGGPCLKNTGACYSCGEMGHKAMDCPRNRNKG
KEVRPQGANAVPLGRGGRQDGAPRHNRFYALHGRQGVDEVPDVVTGTLKIFDFDVYALIDPGASLSFVTPFVAKKFRVEP
ESLRESYKVSTPIGAYVVARKVYRNCPICILHKILPCDLVELNMVDFDVVLGMDWLHAYYASVDCRTRRVKFQFPSEPVL
EWESQNAVVKGRFISCIKARKLISKGCLYHLVRVRDVESKTLPIESVPVVNEFLDVFPNDLPGVPPEREIDFGIDLLPDT
QPISIPPYRMAPAELKELKEQLRDLLEKGFIRPSQSPWGAPVLFVKKKDGSLRMCIDYRQLNRVTVKNKYPLPRIDDLFD
QLQGASRFSKIDLRSGYHQVKVRECDIPKTAFRTRYGHYEFVVMSFGLTNAPAIFMDLMNRVFKPYLDSFVVVFIDDILI
YSRSEEEHTGHLRVVLQRLREEKLYAKYEKCEFWLREVAFLGHVVSGDGIKVDPKKTDVIRNWPRPLTPSDIRSFLGLAG
YYRRFVNGFSSIASPMTKLTQKKAKFEWTDECERSFQTLKDKLASAPILSLPDGLEGFVVYCDASRVGLGCVLMQNGKVI
AYASRQLKVHEKNYPTHDLELAAVVFALKIWRHYLYGVHVDVFTDHKSLQYVFTQKDLNLRQRRWLEFLKDYDMSVHYHP
GKANVVADALSRVSMGSLAHVDIGDREMAREVHRLARLGVRLEEVGNGGVVVVDGARSSLVDEVIAKQDLDSSLLELKAL
VKEGKVEVFSQGGDGALRYQGRLCVPCVDGLREKILEEAHNSSYSIHPGSTKMYRDLRDVYWWGGMKKDIAEFVSGCHSC
QQVKAEHQRPGGLTQDIEIPTWKWEEINMDFVVGLPKTRKGFDSIWVVVDRMTKSAHFLPVKTTYGAEDYARLYIHDLVR
LHGIPLSIISDRGTQFTSHFWKSFQRGLGTRVKLTTAFHPQTDGQAERTIQTLEDMLRACVLELKGSWDDHLPLIEFAYN
NSYHSSIGMAPFEALYGRRCRSPVGWFEVGEAALLGPDLVMEALEKVRMIRERLKTAQSRQKSYADVRRRALEFRVGDWV
YLKVSPMKGVVRFGKKGKLSPRYVGPYKVMRRIGKVAYELELPSEMDLVHPVFHVSMLRKCVGDPNAIVSLDVVGVVEDN
LTYEEVPVQILDRQVKRLRNKDVASVKVLWRNQQVESATWEAEADMQRRYPYLFHSTQA
>Gypsy-23_SP_pol#LTR/Gypsy 1491-5817 via tfasty with Gypsy-30_DR_pol, 1 frameshift. [Strongylocentrotus purpuratus]
PGKLLVVGEEGHSSTSPLLTKQTQTDNKSHPPSTSAVNDHSSPSPPPPYIPAIVDNSYILAFIDSGSFISLMSADFYYSI
PESQRSILQKSTTLASTITREGIDIIGTTSPTIHLGNKTTRHMFNVARNITHPFVLGWDFMFKHDATLSTTTFTMPGMSI
PLVDRRQYQVPLKCNVSLIGKATLPGMSEVHVQGRLIPPQPDVIPQDYDGIFEPSIHEHLHVAGARSLSRPQDGIILLRL
INPSSETVQLSADTTLGQFYSTTGDGEEEYEIIDSIVAGTQKSSSFQASSMLPTSSLSKTEYESAESLLNSYSDVFSSTS
EDIGQTNLAYHDITTSTEIPTRKRAYRTSPTMRVEIQNQVDELLRRDIIEESFSPWASPIVMVRKKDKTYRFCVDYRALN
AVTVRDSHPIPRQDDSIDALSSSSYFSVIDLSSGYWQIPLDPKDKEKTAFTTGTGLYQFKVMPFGLVNAPMTFQRVMEAV
LHGLHWSTCLIYLDDCIILGKTFQDHLHNLREVLQRFREANLKLKPSKCQFFRKEVTYLGHVISTTGVRPDPVNTKKVSS
WPQPKTPTQVRAFLGLASYYRRFMPSFAQVASPLTDLTHKGKKFIWTDDCEEAFNQLKSSLTSPPILAYPDFNNKFSLAT
DASQDAIGAVLSQLQDGNDRVVAFYSRKLTESQRRWSTYDRELWAVISSIRHFRHYLRGQEFNILTDHRPLLGYNSVPIQ
DDATGRRARWIVELNAYSFTITHKKGTAHQNADAMSRMPEDVTHPVSMVNTRSSTTQPVQESTVPKSSNSMADKAPENFI
LANHHADLQYHQQHDKDIQRIIKYIKEVRHPTVREVRRQSPRLRRLLWQLPRLVLENDLLYRRRQDNSGSSSLQVVVPES
LIPQVLQEIHGNPSSGHFGVQRTLHRAESMCFWPFMHKDITDYCRTCPACESIRSPSPKHQAPLQSIKTDHPLQMVFADI
AELPTSRSGYHYILVVVDHFSKYTNIYPMRDQTAQTVAGHLFEEYIKEHGVPESLHTDQGRQFESRLVQDLCKRLGIRKS
RSSPYHPQGAGIVERANRVIKEQLAKYIADQGGDWDKHIHQLQLAYNTSVHTSTGMTPYFIMHGREARTPASVTCPIMTQ
SYDSPQEYVTDVCSRLRQAFQHTRQKAEQAQLRQKRDYDRQLGPSSRDLVWLHNPVNARRKLEPNWKGPFIIVSSSPDNL
NYLIADIHDESAKKLVHHNRLKLFRSRAFLQGKGPSTSRPPSGSQKRPEVIPPSSSPPSSNQARPDIPPPSHLASHSSIE
MPWSTNTPTQADQFRPPEDLQVPAGQQPIHSELGNSDQPSWSEASNGQSSTQSIQRQTRERQVNSPDHFHRPGPSRENPD
VNPDVNPDVNPDVNPDVYPDVNPEVNDQQHTTQPSTGASANQRTPRTMQEDXTTQEDTTTQLTQTRSGRRVHKPQKYSDY
QM
>Gypsy-24_NVi_pol#LTR/Gypsy 3050-7546 [Nasonia vitripennis]
MFPITKPAERRVGKRIKPSRTEWPRSYNTNPLSNTENTVKTNVITASQNQNRANYEDHDQQEVQLLEEKEIKLEIYHLKL
NDLLEYVEIINPYSKNLCNLLVDSGAQINIIKQNQIPIGTQLLDKKILLSGIANNSIKTLGIVELPINGKYFDFHVAPND
FVIPYDGILGIKLLRGSKLRLDEGYLEVNNVKLKLQRGPITKTGMKLSQKETLNIILKEIIRDNDAYNIEQQNILKETDH
ENNIDKIRMQDEANQEICEESRTSKISNIEDELKQTEQSHEKQNTEINEAEPLLENDSVTENTFNNDVFAILNTISKIHE
INDKSELQSLQQKKINENKPRNLENFLKNDDKNIENFILDVNTVLQEQVTPEEAPTQTKRLNYKEILTIMKENNVKLSKA
DKKIIFEEKKYQYVSIDIDYIPEGAQVVEELNIDEKLILNIETEILNKNQENKTRKPSRKEILRKKLQLKNGGKRNDERI
ERMINQYPDVFWIEGDKLGTCNVEQHEINLTSDKPVYVKQYPLAHKSKGIALKEMGKLQETKAIRETKSAFNAPALVVPK
KELIPGEKRYRLVIDYRALNEVTIADPYLLPNINEILDLIGKRKYFDVLDLKSGFHQVKMRPSDIHKTAFSLHPLGRFEF
VVLPFGLKNSARTFQRVINKVLAKYIDKICFNYIDDIIIFGDTIEELEERFGLIAQALIEAGLKLEPEKCEFSKTEVCFL
GHVISEAGIKPDENKIQAVKKFPIPNNVKKVRQFLGFVNYYRRFIKNLAEITKPLTILLQKDRPFAWGLEQQTAFDKLIE
SLCSAPVLQYPQFDKPFIITTDASQYALGCVISQGEIGKDRPIAYASRVLQPAELKYATYEKEALGIMYAIKTFKNYIYG
NKFIIVTDHRPLLWLKSADNNERVQRWRLKLADYDYEIVYKAGKQNTNADALSRNPVAKMDICVVTRAQKRREENQTSQD
LTNDEKIKIINEQRSKLHNKKLQIKKRKRAKVQKSRKKSVPEEEKPHDKQKNIVYSKNTIQFRNDNIIHIVNNKGESLED
NIGELLKKENIHWNKNLSDNEIEILNKGKNKIFVLCLNTAESVVTVKTNIIKLFQLLKTIFLQKNYLIFSISKDLIINNI
SWEEIEEILKTIFEGTNIKVVICLNNIVYVEEKQRDKIFEMLHSTKIGGHSGINRTYNRIKDKYYWENLKVDIQNRVNAC
EDCQRNKLKRIKIKQPMVITDTPLKTFDKICMDVVGPFNVTKNNNKYILSIQDQLTKFIIIASMSDQTAESVADALVKKF
ICIFGSPKLVLTDRGANFTSKLLKQVARRFKFTKIETTAFSPQSNGSLERAHHPLCEYIKNFTSKKIEWDELLEFAQFHY
NTSVHTSHKFTPHELVFGYPARLPSSETLKKSEQLPTFNGYLENLVLKMQEMAKLARENLIDSKLKSKAYYDRFINPIDL
KIGEKVWLIKEPKPGKLEKNHNLGPYEILKVHENSNVTINYNGKPKTVHTNKLSRCHT
>Gypsy-26_DR#LTR/Gypsy 180-4592 [Danio rerio]
MAALAKETEGDDSLLPDYSSEPFTTHREPIQDLIHSLASLYLENEPEIGEQEEGDFDDSLLPPPPPTIEDDDSLLTMIMA
TRMHKVESRVEAFENSSDVCFKDIQHQLNEQSNRIAVIESQVQHMLKQYQDHPIDVQQLENSLSTMLKKECTQVKDTLET
KVQELGQAIMDCLKRRDGQLKSLIQPSGGATSTPHFSHTILDHGSCRPVHFKTPIKLEFPKFGSLDGEDPITYLERCDEY
LAVQPLNDSEIISMLPSVLTHTAKDWWVAEKKRVRTWTQFKSVFLQSFLADDHDVEVERRIRERKQGVDESIRTFAYQYR
ALCLRLKPSMTEREILQAALRNCNPRIASILRGTVTTVDELVRVGTLIEKDINEERSFWRQRHQEANAKSTEGNKFFKGR
QSNPHIAVCSDSSERSPVTLTLPLTIKGHQYQAILDTGSTYSLIQESCWKRLKSNHEVLQSSRGQSFSLANGCVQSALGK
IAWQATIHGHDYPIRAYVMKDCDLAFPVLLGLEFLKMSGITVDFRNSSYSLPEEYGVIHSFTSSSPSPIVSLHLALPLIP
TPSTDLTIIKELVDRADVSKAHRRQLEGLMLDWPTVCTETLGQTNLIHHQIHTIDEIPVRKKAYPVPVNKQKFIDEEIAR
MLDKGIIRPSVSPWASPVVLVPKKDGSTRFCVDYRALNSKTPLDGFPMPQIQDILESLYGATIFSTLDLKSGYWQVKMDE
DSIKKTAFVTKNAQYEFLRLPFGLRNAAATFQRLMNNVLRDYMGEFCFVYLDDIVVYSKTIQDHFQHLKLLFAKLQDSGL
TLNLKKCSMLQRTITYLGHVVSEEGVRTEDTKIKAVQDFPVPKNLKEVQRFLGLASWYHRFISHFSERAAPLYALKGKNA
IWNWTVECQSAFDDLKYALQRAPVLMPPDFTKVFRVQTDASDIGLGAVLTQDFDGAEHVIAYASRLLHGAEKSYSTAEKE
CLAVVWAVEKWRQYLEGRNFEVLTDHSALTWVFNNPKPSSRLTRWALRLQCFSFLVKYRKGSCNVVPDALSRGIPGQEVV
GHIAICQANKTDPNLPVSWDEIGKAQKLDSSLQALWEAAKQATTDSSRIAYCVQNDYLFRRVPNKDQGCVYQLVIPASLR
EQFLHFAHSNPLSGHLGRMKTLKRLLDSVYWPEIRKDVWSFCTQCKTCQIYKPRISKLSGLLQSTPVVEPGYMLGVDLMG
PFPKSNRSNEFLLVFVDYCSKWVELFALRSAKTHLITNILTKEMFTRWGTPAYLVSDRGPQFTAQLLNETCKRWGVVQKL
STAYHPQTNLTERINRTLKTMLSSYVHDNHRDWDKWIPEFRYAINSAWQESTGFTPAEVALGRKLKGPLDRLIQRPPNPD
HLAYNTLERQKAFLEQVIAKTSQAQERQGKYYNQRRKPKSFEEGDLVWILTHPLSRAADSFMAKLAPKWQGPGKIVKKVN
NVNYRVVMLDKPSQCDTYHVEKLKEFYGTV
>Gypsy-25_BG_pol#LTR/Gypsy 1684-5154 [Blumeria graminis]
GPESSYFVAVGGGHDTQNRNNPIREGFGQPHKTTLARLDSNPKIRFTVFWNYGSPSCYISNDLSKLAIPYNSRFPSIISG
VGGKGQSINHDAIISFQLATNNGWSEKVTVSCGVVENGTFPGDICLGQTIYHQFGFYSDPKGQVTLQDFPNSPILHNCDP
LYTVTNSSFPINDTHISNSVISNPNFTHFLTQLTPTSTIPIHRDTPVWAHTLVRSYEKKSPALFNSSLRITSKISKVEHH
IDTGDSAPIRVSPRPYSPAHEKAIRQFLDGKIGSLIQKSTSPWASRALLIIKKTPEPTPYPVYRFCVDYRPLNKVTKKNA
HPLPNAFYEIQRAAGHKWYAFLDFKDGFWHIKIANKDVPKTAFTTPWGLYEWLVMPFGLCNSPATFQAFVEDVLSLFREW
VAGLLDDVCVWADTRDELHKRLDKILQRFIEYGIILNPSKCCFFVNKGVFLGFLISEQGIQTDPDKVSAVRNRSIPNTTT
AIRAFIAAAGYMRFLIEDFSKLCEPLHEVMTGPKNAKIEITPQIIQSWKHIRDAMTTLPVVAMFDFRLPVVVEPDASQKH
IGGALLQPRLKTSGKTLLHPIAYFSKKLTPTQQRYSSQEREMLSVVLCLQHWKIWVEGDDVTVVSDHESLKNFQSKLDQP
PRMMRFINIIEHYGVNIVYRKGKANVLADYLSRPMENVHQTSDKPNFWSTVLQPVNKSNSSKSVSKSPADQPVVQKFIDR
IDLLTRLDLQAIFEHLHLGEPLPGRLDPKWIRNLFTVHLGKLYRLIQNDESSVGDPPGPSGSIVMLQVIEYEKLLSKAKS
IHSRLGHATIGLTQRYILERFWHPEVMLAVNDAVRSCHSCQLMNKPDPTLPNLMPIRLPQPLTRWALDHTGPGGPGGHII
LNAVEYATGWLVSRVVPTTGFQHVSPLLEFIENIFGRPREYVSDNHNAFVRKSASEWHASKGTTQIKITPQRPRGNGKVE
QANGELKYILNRLVFEHRNFTYETLLNQAVSIYNRRVGPNGYSRFFLMFGTKPPLEHQIYPAYEREPSESEDKAFAAELA
KMHAAPPARVNVASLKTARDQTRAYTQEHKAIIRVYGTGDWVLRERSRKHKHEPFYDGPWLITGCHQGNTYSLSSPGGIA
LMNRYNGSRLFPAYIRDGHPVRSLWYGSKSLLESDRR
>Gypsy-23_DYa#LTR/Gypsy 34-4072 via tfasty with Gypsy9_Dya, 2 frameshifts and 2 stopcodons. [Drosophila yakuba]
MEYQLRILMEHQSQSFLELAKTLQASVREQAQTxVVTLLKFNADIPGADATQWCATVDIILVEKPLEGSALILALTKSLE
GSLSEVCYAGVTWPEFKQLFQQRYANTETPAAMFLKLLNCRPGNSECLAIYASRMVTSLVNKWKGLDAERIAVSVVLGHL
ANFDRRVQRIAYTAEIKNRRDLQAELQVFAFDKRTHHSGNEESGAKRAKLASLKCHLCGKMGHKMIDCRNKKQSAGMSRQ
DQRGSQPFQQHFKDNITCYRCREQGHIASQCTYHNMTGGGAGLRNEKRAELCVVDEPQTSMLLRGEDFPIFFDSGAECSL
VKESFAEKLSGRKVNNVVSLKGIGNANVCSTMQIDNNILINGNSLNVTFHVVPDVCMSNNIVLGREVLPEGYAAVVSCKG
VEIIKDETKIVKTCSKFIDNSFDIIESNVNGENKNEIITLLKSYSDSFIQGASQTRVNSGEMQIRLIDQTKTVQRRPYRL
SPSERNIVRQKVQELLDCKVIRPSSSPFASPVLLVKKKNGSARLCVDYRELNSNTVADKFPLPLISDQIDRLRGAKFFTC
LDMASGYYQVPMHPNSVEYTALVTPDGQYKFLSMPFGLKNAPSVFQRAVIKALGDLAYSYVIVYMDDIMIVAPTKELALE
RLKIVLNILSKAGFSFNVEKCFFLRTSVQYLGFEVRAGEIGPNNRKVESLNALPPPRSVTTLRQFIGLASCFRQFVPGFS
QLMKPLYFLTSEKNKFEWNTEHEAIRRKIIHILTNKPVLIIFDPQYPIELHTDASAIRYGAILLHRIENKPYVVEYYSKT
TSVCESKYTSYELETPAVVNAVKHFRHYLHGRKFVIFTDCNSLKSSRNKIELLPRVYRWWAYLQSFDFDIQYREGKRMAH
ADFFSRNPLPPENSPEYAKIVEKRIELTEVSEDWIRAEQQKDQDIVEIITKLNDDELPFELSKTYDLRGGVLYRVIQRNG
KTLCLPVVPRGFRWSVINQVHESIMHLGWEKTLDKVYDYYWFEGMAKYVRRFVENCITCRVSKSSSGKVQMELHPIPKIN
VPWHTIHIDITGKLSGKSDRKEYVIVQIDAFTKYVYLYHTFTLSAESCVMALKSSISLFGNPIRIVADQGRSFTGAKFVE
FCSSQNIKLHLIAIGASRGNGQVERVMSTLKNxLTAVETSSRSWQEALGDVQLAIYCTANKITKASPLELLMGKVARPLG
LVPIHDPETEIDLTKIRTQALENIERSAKCEKERFDKGRAKVVKFSFGDFVLLNNSERNQTKLDAKYRGPFEITEVLDND
RYTLKSMKGNRRYKYAHERLRRLPNGQVPSELEIDDSPSVEAVERDSSEAVERDGMEVDERESEWRC
>Gypsy-21_BG_pol#LTR/Gypsy 1917-5895 via tfasty with Gypsy-52_BG_pol, 1 frameshift. [Blumeria graminis]
KRQTSDLSRDQRCDWYGGEDELIRAVLLDDSPLELRSTSSRNSMLLQTQLSDPRTGDPLMFHTSCLVDSGCTAFAFADAE
AVVQRFSISTKKLVKPCYVCLADGSTQATVTDYFTIRMHLGQHSEIIVLYVTNLGESNPIILGMPWLQLHNPLCDWNAMT
VNFGSQFCQSHCLPWRTSTSALCPPPQLSGSHEAPINIQNEPPSIAQTLHQVTVEDCPDHYTKAVNDDDTEKSTPLRRKV
DQDDVDRFLQDKLEPSITDIKDRLPSELHQYVEHFLPKNAKVLPPHCPWDHKIELLPGKQPPFYKNRPFSPSELQCIKEW
IDEMLEKGFIRESSSPAAAPLLLVPKSSGGVRICQDYCGLNMVTIKNRYPLPLIRETLDSISAAKLFTKLDVIAAFNRVR
IAEGHEWMTAFTSRFGLYEMLVTPFGLCNAPATFQNYINHVLHNALDDYCTAYLDDVLIYSRTREEHTKHVSEIIRRLGE
AGLQIDIDKSEFYTKKTKYLGLVISTEGLSMDPEKIKAIVTWNAPTTVKELQQFLGFANFYRRFIRNYSGEVEPLTRLLR
KNVPWVWEKDQLDAFTSLKSLFTQVPTMAHFDYEKRTTVETDASNWASGAVLIQKGIDNISHPVAFFSSKHNPAESNYDI
YDKELLAIVKALDEWRPELSSTHEPFEIITDHKNLQTFLTAKQLNQRQVRWSEFLSQYNFKITYRPGSKALLPDTLSRLP
GLKPKDASDERLQNRFRPLIPLSKIKESVVNNSPSEDKIPEHNNVDFIAALAPELTLSDLIIQAYKTNQTALSMINSLKS
LSNRSWPAPISRILRKDKVEFKLVDGLIYFRNRIFIPDHEDTRLEIVYRTHSSGPAGHPGRVKTLDLVQRTYWWPRMTQF
VADFVRGCALCFRTKTPHTSPPGFLKPLEIPLRMWADISIDHVVDLPPCKRNGRTFLHILVIVDRLSKMRHFIPVTSLDA
SELVDCFVQNVYKLHGAPDSIISDRGSAFVSEFWRRLNKRLSVALKPSSAFHPQTDGQTEIVNSAMNQYLRAFTSFTQDD
WVDWLPLAEFASNNQTSDTTGVSPFYANYGYNPRLGIEPPDPRPPNLTESIKKEYLRADIIAERFDRILGKLHALTRQSQ
DRYENNANTRRSESPIYQPGDKVMISLKNLKTNRPKKKWDDKWDGPYRVLKVYNGAVIVELPDHIHVNKSFHTSLVRPWT
EPILAGQSIINSLENRNVAGRIAERGDDGNILDKWEFEKILDVHADDIKKSGLTYLIKWKYDNKATWQPQADLKGCEKAL
REFHVKNPDKPGPPHGLDMPLILEARTKPSLRRSKRLRRLKLRILK
>Gypsy-20_ST#LTR/Gypsy 44-4516 [Solanum tuberosum]
MAEGTRMKLLDDKLLRHDEILGDLTTTCRELNETQTGIRGTLELILDRLTALERAPVRAPEGAFPVRDGLLPNPIQEARA
RLPIPPPKWELPCFDGNEPKVWLRKCEKYFNLYRTADNQKVEGAALYLNGLAETWYNSLVLDRGVVTWAEFKEELCVRFG
EADVADIVEEFNKLSQIGTVDEFLGKFEDLKAQMIIRNPTLNEAHFLSSFIGALKEEIKFGVKMFKPVTLRAAIEQARLQ
EKAIEVAQKKNVMMTKTSYQGGGSSSTKNMGSNPIPTVASGSNYSKHATVNNPRPNTFRLTPEVYEYRRSNKLCFRCGEK
YYPGHNCKAKQLNCMRGEEEAILPDEIKVPEPPDLIIEGEIQQEVMEAICLSALSGSNQGVNAILVKGSVKNRVLAVLID
SGSTHSFIDEQAVSETGYVAEYSSPMKVTVADGNYVMCHTSCPDFSWKMGGKSFKENLRIIKLGGCDLVLGNDWMKKNNP
TKFDHEKRCVTIGRKSNKTVLHAIPVEGSLSMISGNAMSKLIKKGQTLIAHLFILGGESELEQERVDDAIQEVIDKYQAV
FVEPKALPPVRQLDHAINLKPGASPVSIRPYRYNHYQKEELEKQVAEMLTNGIISHSQSPFSSPALLVKKKDGTWRFCVD
YRGLNELTVKDKYPIPIVDDLLDELHGAMIFSKIDLRAGYHQIRMKAEDVYKTAFRTHMGHYEFKVMPFGLTNAPATFQA
LMNQVFQLYLRKFVLVFFDDILIYSKSLSEHVEHLLLVFSTLVAHSLYAKRSKCSFGQPKVEYLGHVINAEGVSTDPNKV
RAMEEWPTPRTVKALRGFLGLTGYYRKYVANYGSISRPLSDLLKKDAFVWSEEADQAFVALKRAMSTTPVLALPDYNEEF
VVETDACYSGIGAVLLQKGKPIAYFSKVLALKHRDKSIYEKEYLALLNAVEKWRHYLQYKHFVVKTDHHSLKYLLEQKVT
TAVQQRGLTKLLGLDYEVQYKKGAENRVADALSRQQGDSLKEEGQLNAISMTVPLWVLDITTSYEGDSMAMELITQLTVD
TTGPKLWQYLSGVLRRKGKVYVGSTGNLRQQLIQTFHASNLGGHSGQLGTLKRLSLLFHWPLMKQMVVQFVSECEICHRN
KDENVPYPGLLQPLPIPDQSWRHISLDFIEGLPKSSGKDVIFVVVDRFTKGAHFIALSHPFTALQVATKFWKRVHTLHGP
PESIISDRDKIFLSNFWQALFRLSGTQLLYSSSYHPQTDGQTERVNRCIENYLRCMTSHRPHQWKQWLHQAEWWYNTNYH
TSLMCSPFEAQYGYSPPQISMGPLLDSIVPAAEELVMKRQQMQQIIKDNLCKAQERMKHYADLHRSEREFQVGDQVYLKL
QPYRQSSIALRKNLKLSSKYYGPYKILTKIGPVAYKLELPSTSRVHPVFHVSLLKKKIGAKKVVQSTLPSTGDDGQFLVK
PVAVLRRQMMKLNNVAGVKLLIQWSNLPPEDSTWEDYHFIKSKFPDFAINP
>Gypsy-21_NVi#LTR/Gypsy 2927-6598 via tfasty with Gypsy-16_NVi_pol, 2 frameshifts. [Nasonia vitripennis]
MQEPAALSSLSAETADEGDEAGQCTQEHREPGRSERDADDVIDSILESQAGEEBNLPGDEDNPQEKRWWMEARVGSFRFR
ALYDNGASRVCMGPIGLQLASALGRQLMPSHGRGAKLADGSYTKIVGYVWLPFRVGNVEKEVRVAIIPDLPTDCIVGVNF
MLTFKAVLDPTTSKLHFKESKEYVNVELAAMEGGALTLASMGLADVEEQQREALRALLDKIIGPETGEIGCTTWIEHHIE
VQTTRPIKQKYFPVSRKIEEEMHEQVKAMLAAGIIEPSNSAFASPVVMVRKANGKYRFCVDFRKVNAITRNDAYPLPQMN
AILRKLQQARYISTIDLSSAYHQIPLSEESKQYTAFTVPGMGLFQFKRLPFGLSEAGATFQRLMDKIITPELQPHAFSYL
DDVIVATETFEDHVKVLERVLKRIKEAGLTVNREKSVFCKEEVKYLGVLVNRDGFRPDPEKIAPIVNFPQPKNLKQLRRF
HGMASWYRQFLEGYAALAEPLTRLTRKDQPFVWGEDQQSAFEAIKALVASAPVLHCPDFDQQFVIQTDASDTGLGVVLTQ
NINGQERVLEFASRVLTPAERNYTVSERECLAVLFAVRKFRQYIEGYEFKVITDHSSLRWLCNLRNPTGRLARWALELQG
HKYTIEHRKGADHHVPDALSRMYEETEPEIATVSQDPQPQDCWYNEPVQIVGGGGRMYKYRPDPDITGAMGDDDDAWKLV
VPAEKRLQVLQECHDQPTAGHFGREKTYKRVTEKYFWPRVYRDVARYVQRCRLCQLGKVEQRAPQGLMGKRVVRKPWQWV
AGDIMGPLPKSAKGHEYALVFQDLFTRWIECIPLRKANGKSILTALKERVILRFGAPEIFHSDNGTEFRNKTINEYLAAQ
GIHHSYSPPYHPQANPVERVNRTIKREIAAFAEENHRAWDEHLSEIAFSFNTAVHEATGASPAMLNFGRQPAMPASLRVK
EDQEAARQGAVGDWQARLAKLPALHERAKALSGEAQDRHASYFDARRRAATFKVGDIVAKRRHVLSSAAGGIAAKLALPY
VGPYTITAQVGSNTFELTGKDGKIEKLVPAEEMKIFYDTAEDEAGDEVDDEADDNPTRPPRDDSEAEATRDPPAACGDEP
ELEPSDVGTGVEDKREKRTRKRVTAPAGACGGRATKDSVGAAGEPPRRPRGRPRKIVTASEPPEEQRIVKRKPGRPKGST
KAKVSDKAETSPRKTRAMNRAARA
>Gypsy-22_NV#LTR/Gypsy 114-4127 [Nematostella vectensis]
MATAALYGNLFAFDETEHNWTEFIEIYEHYFAANKITEDKFKVSILCANVGPKAYHIIKSLCLPEKPADKTFEFITKAVK
HHFKPKLSEASASLYFNSRIRRSNESVMMYVAELRRLAVPCNFGGFLNRAMKDRFIAGINDAEIQQKILSTPDGDLTFDK
AFQIAEAYESARRNVREMQKSVAQEEPSVNQVHYSQRPKGKGGPTRQRGNYENKRGQVKGSQKTPMSGDKSGGECYRCGN
SHDPQSCWFKDQNCYKCGKKGHAKSACRSGATITHVEEEVFSEDEDSEGGPEGMYHIRNPGNKVPPITVNLEVDGRPIEF
EIDTGSPYTLISEETAKTLPSFHKMKSSELDLTSFTGHKLKVLGTIETVVSYHGNSCTTSVVVTNHKRVNLAGRDVVEQL
SVISVNHLKETLTLETVLERHPDIFRDELGKMKGTQAKIIVDPSAKPLFYKPRSLPFAMKSKVIAEIDRLVEQDVIEPIR
HSDWAAPVVPVLKPNGEIRLCGDYKVTVNKVSKVEQYPIPTLEELTAQIAGGTIYHKLDLSHAYSQVELDPDSRKFTTIN
TVKGMFQYKRLPYGVASAPAAFQRAIEELLHGIPQVAVYLDDILVTGESTAESLENLEKVLARLDEAGLRLKREKCVFMQ
DKVVYLGHQIDKTGISPVKDKVEALVKAKTPENVTELKAYLGLLNYYGKFLKGLSQVLHPLHKLLEHGVKWHWGPEQQTC
FELTKKMILSAGLLVHYDTERALVLHCDASQYGLGAVLSHIMEDGSERPIGFASRTLSDAEKNYSQLDKEGAAVVFGLKK
FHKYVFGRDFDIITDHKPLLSLFHEAKQTPVMASPRIQRWSILMRAYQYHMKYRAGNQHANADCMSRLPLPVKARTEDRV
LMIEELEDCSILTSEQISHWTRKDPVLAHVHEYLLRGWPTDDTDPALTPYRKRRDELSVQDGCILWGARVIIPPDGRDQV
KRELHSAHPGINRMKALARSYVWWPGMDEELAEIVRRCDVCQDRRRNPPSAPLHPWEYPDGPWKRIHLDYGGPVEGHMLL
VITDAYSKWIETYLMKSTTSQATIDKLRECFARNGIPDVVVSDNGPNLISEELSTFFSKNGIQHIPVAPLHPSSNGQAER
TVQTVKEGIERTPGRDLTTKLQRFLFQYRVTPHTTTGRSPAELLNGRKLKTRFDLLHPALRGRVRDNQSNMKRYHDGKTP
LRAFTAGDLVRAKNFGHGVRWFKGKISKVTGPLSYEVELIDGRLVRRHIDHLLKREADTDVNEKPRGNSNISLGPMELAG
VDTVPIESLVPPTSTTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLNDYVL
>Gypsy-21_ST#LTR/Gypsy 7665-11235 via tfasty with Ogre-LE1_pol, 1 frameshift and 7 stopcodons. There also is a gag (ca 4200-7400) matching that of Ogre-LE1 and many others, but it has too many stopcodons and frameshifts to trust. [Solanum tuberosum]
MMFKKAKRPLAVAKVCACFSIEMKASFIENLFICLIYLYFTFLTLFVYNFSNINLKLDNVMSCHEPSEQNEAGDDECEEY
EEENEIPEYVAExFxQFENQHKPNLGETETVNLGDEECVKEVRISVHLTEAQRRYLVRFLRExIDVFAWSYRDMSGLSMN
VVSHKLPINLEFSPVKQKTRKFKPELSLKIKEEITKQIESQVVEVTQYPSxLANVVPVAKKDGKIRICVDYRDLKKASPK
DNFPLPNIHILIDNCAKHDMQSFVDCYASYHQILIDEEDEEKTTFITLWGVYHYRVIPFGLKNAGATYMRAMTTIFHDMI
HKEIEVYVDDVIIKSRKSSDHLTHLRKFFDRLHRYNLKLNPAKWAFRVPARKLLGFIVSRRDIELDPSKIKVIQELPPPK
TKNEVMSFLERLNYISRFIAQSTVVCEPIFKLLKKDVLTEWTRECQTAFDAIKNYFSNPPVLVSPREGSPLLLYLSISDN
AFGFVLGQHDEIGKKERAIYYLSKKFAPYEAHYTILERTCCALTWVAQKLRHYLSSYTTYLISIMDPLKYIFHKAMPTRK
LAKWKMLLSEFDIVYVTQKAIKVQALADHLAENPVDEEYEPLKTNFPDEEVAFVGEYISEEYPGWRMFFDGAANHQGKGI
EAVLLSETGQHYPMVAKLRFDCTNNMAGYEACIFGLKMAVDMNVHGLLVIGDSNLLIHQVQGEWAVKNPKITPYVQHIHK
LCKRFRKIEFRHTPRTQNELADALATIALMIKHSYTSYIDPVDIEVKEQSVHCSHVEAELDGLPWYFDIKSYLGTGTYPE
NATFNQKKSIRRMALNFFASGEILYRRTPDLGLLRCVDASEAAKFLEQIHVITLSRKILRAGYFWMTMEHDCCKFVQKCH
KCQVHGDLIRVPPHELNAMSSPxPFAAWGIDIIGPIEPTASNGHKFILVAIDYFTKWVEATSYKSVTKKVVADFVCKNLI
CRFGVPESIITDNxANLNNHLMREICEQFKIIHRNSTAYRPQMNGAVEAANKNIKKILRKMIDNRKGWHEMLPYALLGYR
TIVRTSVGATPYLLVYGTEAVIPAEVEIPSLRIIQEAELSDAEGVRKRIDQLTMIDEKRMVVVCHYQIYRQRMIHTFHKK
VKARIFEIGxLVLKRIFPHQDEYKGKFAPNWQGPYMVRKVLSGGALVLSEMDGIEWPKPINSDDVKRYYV
>Gypsy-27_DBp_pol#LTR/Gypsy 1946-5350  [Drosophila bipectinata]
MWHSRSRVAEMSKVSVGKRGKEHVPGRGATFQPICIKIEADPQTLGNKKISSVKHINQILVNINKQSPTVERSDGNPISA
RGADYKEGKPRCFQEDPVTPRIERARRRNRQRRTERQRICAAIRAAVSCDNRPFAIVEVEGNSIEGLLDSGASVSLLGEG
CLELIEKLGLRREKTRAIMQSAGGAKHQVLGKVYPEIRYQGQTHRIPILLCPSLKQKLYLGVDFWRKFHIAPEVVGVESL
ENVETEFHSKGEPVEPHALTNEQQERLDKVKEGFLSYENQGLGLTTMEQHTIQLVEGAVPVKERFYPVSPAKQQLLFAEV
DEMLRLGVIELSESPWNNRTTLVQKPGKNRLCLDARKLNALTVKDAYPLQNIESILSRVDDTIFISSIDLKHAFWQVELD
EKSRPYTAFTIPGRPLYQFRRMPFGLCNAAQRLCRLMDRVIPQRLRDRVFVYLDDLLMISKTFEEHCELLAEVGRCLRRA
NLTIGLQKSKFCFKYLRYLGYVLGDGALKTDPRKIAAIKEIEAPKNVRQLRSFLGTANWYRRFIQNFSEISAPLTDCLKR
GKGLQWTPEAEVAFQKLKQALTCAPVLTHPDFRKHFWIQCDASHVGIGAVLFQKDDNKAERPIAFFSAKLRGAQLNYSVT
EKECLAAVKAVERFRPYIEMMPFTILTDHASLKWLMSFKNLEGRLARWFLALQPYQFNIEHRKGKDNVVADTLSRPNDVE
ELSLLNMETTAFASEEYLERMKLVKEQGDRFPDLRVEEGLLFKKTRFCREDSEEFDWKLWIPEELTSTLVQQAHEGEMAL
HGGIRKTLARLQRMYYWPNMVLQVKEWVTSCISCKENKHTTHITRPPMGKEVETDRPLQKLYLDFLGKYPRSRRGDTMLF
IVVDHFTKFVWLKAMPKATSVAVAGFLREHIFTQFGVPEIIHTDNGRQFISKEFEDMMQLYGITHMKTGRYAPQANASER
VNQSVLAAIRVNIGEDHARWDERLPEVQAALRAASHCSTGVSPYFAMFGQHMFSNGGDYQLARKLKALNESEIQQLRRXE
KQQVQRSGIKERIHQAYEEAARRYNLKTKEVKYLPGQEVFKRNFVLSNLRKNINAKFCKKYVKCRVCKVLGNSLYALENL
RGQPIGVFHAKDLKQ
>Gypsy-39_AMi#LTR/Gypsy 59-3880 via tfasty with Gypsy86_DR, 5 frameshifts. [Crocodylidae]
MEHLKTPKELKLSGKAAESWKKYKQSFDIYMQATGYAAKEDEQKIAIFLNIAGPEAVDVFNSMQLNQDERKSYVTVLQKF
AEYCIPKTSETFERYKFHKRVQKEGESFEEFLTDLKLMSQDCNFGQLTESIIWDQIVIGIGDLKLQKKLLEDVNLTLDKA
VRVCQAAEVTLHSLQIMEGKSETATVDQVNSKEKAESKQGEQEDSQIAQGMRLQVKEHRNCKKCGIKHPNRQCPALGKRC
NACKRYNHFARVCNQEQQTQRRSQSMQTDAVYHDDTDESTEEEFYVGTVAAETGDDWTVALETNGRVINYKMDTGAQVNV
LPELIVNKLKQKPNWIKGKNVKLRAYNGEMIPTKGVCELEVKVKDQIELITFVIAIGNTMPILGLKTCQNLGLIKRVYMV
TNAKDTLIEDQYSDVFEGIGKLETEYKIELAEPNYPVIHAPRKVPLAIKRRLKEELNRLVALKIIDKVEEPTEWVHSLVI
IEKKDGTLRLCLDPKELNKYVKREHFPLPTREDIFSEMAGAKYFSILDASSGFWQVPLDEKSSRLCTFNTPFGRYCFCRL
PFGLKSAPEIFHRKVQQIFDGVAGVKVYIDDILVWGKTKKEHDLRLQKALNRARVAGLKLNKQKCKFRVKEITYLGERIS
ENGVQIDPERIRAISNMPPPQDKEGVQRFLGMVTHVGRYIENLAEHTSKLRALLKKNTQWTWDANMDKEFAKLKKLIETA
PVLRCFDSKRETKLSTDASKEGIGATLLQKYGDHWSPVAYASRALTETECLYAQIEKEALALVHGCKKIHVFIYGRPVVA
ETDHKPLVTIARKGLADIPPRLQRLFFQLQLYDLRLEYKPGKELVIADTLSRAVDNTVDDAEMESDIVHVNGIKKYYPVS
DEMWQNFVVATAKDGTLQKVIKAITTGWPGHYIPSPYFQFKAELSVIDGVLFKGHRMVVPKALQADMIKRIHEGHLGIEK
CKRRAREVLYWPLMNSQIENAVHKCDTCQKYQPKNKKEPMWIDNDIQEAWYKVGIDLFTLAGKDYLLVLDYFSHYPEVAL
LDDMTAQQIILRLKAIFSRHGIPHRVMSDNGPQFSGHEFKKFARDYGFRHVTSSPRYPQSNGLVENGVKIIKRLLKKAND
SGGDPYLAILNYRSAPLAHGLSPAEILFNRKLRTRLPRLTVTNHRTDTDLHRYKQKAKAKQKLYYDKGSRALQALKPNDA
VRIYNGESWEQKARVIRKVAPRSYDILTQDGQSFRRNRRHLQHIPEQGEEDRRREQLETTHKLTQESCSEETTEA
>Gypsy-37_NV_gag#LTR/Gypsy 37-1371 [Nematostella vectensis]
MTEELQLSIEESLCRLTAEQLHEVENFLKLHEDDKLSRLKRVRRISQAVDNELESKGDQAVSYLKGLEEVISAISGATKP
KQEKQAQPNTSASASPSEELQALKDQMNKLMGMESKKGLYISDIKREMKISGQIGEPGQKDKLSFVSLVRQIDSGLKKGH
TEVEVVDAVIKSICPGMRLRSYLEGIPSLTLAQLRHILRSHYQEKNATELYQELAILAQAPGETPQSFVIRALDQRQKVC
FASQESDSKMKYDPELVQGLFLRTVETGLMDDGVRMKLRPYLQNTDTTDEDLIQHVNIVASEELERKSKLTKITKKVNQL
TSDNVESQGNGGRKDKGKTAPAAVSTEDLILAELKSVKSEMATLRETVAQVQQERDGNIDNRDIHVQKAKRVCKQCEDSN
TIDACDHCFYCGSSEHWARGCRKRRPTQNKDSGNQHRLPPRDRR
>Gypsy-40_BG_pol#LTR/Gypsy 1296-5081 [Blumeria graminis]
GKLDAPEQSRTQEPKAVVSQELIMNTSPFLVNALINDSNMLQALVDNGCLCSGIINDNMVSQLQLPRISISPRSLETAED
STTNKPVVDSITYISLDLDGYVMPKIWLYVVPHCTHQMILGKKWLEDQDAVIHAKEQRLEIRKIGISIHSVKRWRNALRN
VARPKMVPVGEMVSMIKKMPVCKASLDDINKALRTKPSVTVEQAQENLPEQIREFAHLFADGGGADKLPPLRGTLDHAIN
LQQQDGKPLSPPWGPLYGMSREELLVLRKTLTELLQKGWIRPSNSAAAAPVLFAKKPNGGLRLCVDYRGLNAITTPDRYP
LPLFKETLRQLSKARWFTKLDVKSAFHRLRIREGDEWLTAFRCRLGLFEWLVTPFGLINAPATFQRYINEQLREHLDLDA
TAYMDDVLAYTSGSEDEHWNTVRSILRKLSKAGLYLDISKCEFLCKEVKYLGFIIRAGDGIKVDPVKVKAILEWDPPSTV
KGVRSFLGFANFYRCFVDGFSEIAAPLTALTKKDSTWQWGDAENEAFKRLKRIFASQPVLAQWDPDRDTVLEADCSGYAM
GGCLSQVDKQGRLRPVAYYSRRLTSAEANYPIHDKEMLSIVACLQEWQAELKSVAKPFKIWSDHKNLSYFASKRLLNERQ
VRYNDILQQFQYVLEWRPGNTCERPDALSRRDQDKPTGLSDERTAGRIMQLLPRLPVNPVNIELSEEKLDPAAKVVLFDE
DELQTLWKRGVQSDEDWRRARDSVRDGERGFPPDLAQKMKANIGECTVAADNILRGRENRIWVPDYEPLRTAIMQRSHDS
HLAGHPGKDTMVGIILRRWFWPKIRDSVRKFIRNCDTCGRTTVWREAKAGFLRSLPIPDRIGSELTIDFVTDLPQSRGCT
NVMVITDRLSKDVFMFGTESMDAQLCASTFIDRYYRYFGFPRFLTSDRGSDWVGHFWGTFCKLTGISQRLSTAYHPQTNA
SERANQEMYKYLRVFTCYAQNNWVDLLPLAQLALNSRPNSAIGGMSPFFLRHGYDLDPISEPTPSTEELSKHPGRRAAGE
YVQRLRDAQDFAQAAMASAQQRNEENANQHRRQPEQLKVGDKVWLDLRNIKTPQLSKKLAWVHAKYEVTAVPDPLTVELN
VPGKIHKRFHVELVKRAGNDPLPSQVRDDAQNPPLIDDLEGPEYEVESILRARSIRRGRGNFRQALVKWTGWAEPTWEPI
ESIRETQALDKFEATYGDIEINNGPENDSSGGFVGPAEGHILDKRRQKRHGKNKSTKKILKI
>Gypsy-41_BG_gag#LTR/Gypsy 160-1761 [Blumeria graminis]
MVNSSDNPFAKSKKIRRSERIELSQNQSPSQIDFQEQTTNDNRFTPLHNIQDTATTAAAALSESSSLSSPPQSPSMPSRN
VSERKKGKGKAKQLASPRLETVRDPYGPTDLEHRELDLLKRERALLARAQELDDLETAIRGSRLGTSSNTTARPYETSSV
TNFASESTSRNPDNLIPSIERGHAQVRFQDPSDDDEYPNRTRITRFASTSRPAFRPETIPLLPSRLSDGRDMKPRLWQQQ
ILERLQWYNSSFFDNSHRRSYIVDNTEGIARDFLLPLYMDMNPRPSPNRLIQEVVDFLSDPAEQQTASDDYHELEMQPYE
QFRHFFQRFRILANQAGLTDENMLKSDLRNKITKRLRSAVVNEWRRCRTLNEYANVIQDVDADFEAQAKQSARRRTLTNQ
QPSGNSNSKGTARSQGRHNNYDKSASSDMSLKMAPSSSPPVQYRQSDRHRSYDKTRPQDPPKFSPRPKNYSGNGGPQHSS
ATPGRSSAPPADYRSKSINAIEDRSTSSSSDIEYHDALEDSADEEHTPRLKDKA
>Gypsy-40_PT#LTR/Gypsy 37-4604 via tfasty with Gypsy2-PTR, 1 frameshift and 3 stopcodons. [Populus trichocarpa]
MAPETRSQDVRRMDDSLEAANQRVNGIEVKLHTQSDDLAQLKAMMKEMANQQISIKQTLQTLAGEASSSQHVRMPQHPAP
ASNQDWTGEGPPTYRSHRPRRDFPSFEGEEVHKWLYKCNQYFDLExIPETDKLKLASYYLDGLALYWHQNYTRNLEGHEV
TWAEYVDALCCRFGGQKDPLEELTEHKQEGDLEGYIRDFDMLWNRAQILEKQALVFFLGGLEVEIKNLVKMFEPKSLKQA
YNLARLHNNTLTYRKITPHYPKQHSQASSNFQPAKFTYPANTYKTNPSHPLNPSKPSPPALLPTPTNPPFNNNNVYPNHK
PARPIRTKEMDERRAKGLCFWCDDKFVPGHRCRNRKLYSLCIVEDDGDNSSEEEETMEPRNTENLTPHLSLQAIHGTAGC
QTIKVWGKIDKCPILILIDSGSTHNFIHADLMDKLECPTTTIKPMVVEAANGGTMSCTSVCKNLxWKMQGVQFQADIYVM
KLQNYDMILGIQWLKLLGNVLSNYEDRWVSFWWQNREVTLRGENPRIAQSIRLEELNGLLNTETLLSEVRLCSLRVVGKA
DLVNPAQGIPHAGEDNEDSPLQTLLTAYQHIFCDPRGLPPVRRHDHKIPLKDESQAVNLRSYIYSGLQKDTLETLVAEML
EAGIVQPSNSPFASPVVLVKKKDQTWRFCVDFRALNKITIKDKYPIPIIDELLEELEGAAIFSKIDLRAGYHQIRMVSED
VFKTAFRTHNGHYEFLVMPFGLSNAPATFQSLMNDIFRDHLRKFILVFFDDILVYSKTMADHLQHLRLVFELLCTHQLVA
KESKCVFGTRQMEYLGHVITKEGVATDPHKVTAILQWPIPTTIKQLRSFLGLTGYYRKFVQGYGTICRPLTQLLQKDSFK
WTNTATLAFKQLQAAMSQPPVLALPNFDKTFVVETDASGVGIGAVLMQEGHPIAFVSKALGPRQLALSTYERELLAIVFA
VTKWKHYLWGRRFLIRTDHSSLKFLLDQKTTHVAQQVWLTKLLGFDYEIEYRRGKDNLAADALSRISHNELGALTLSSIS
TSLMEDIKKTWDTDHNLRQLIADLTKDASSHSNYSWVNNTLIRKGKVVVGQAPNLHHQLIKLYHDSAVGGHSGATVTSKK
LGQVFYWKKLQKLVRQYVRECPVCQQNKGENVKPPGLLQPLPVPHAPFIDISMDFIDGLPKSEGKEVIFVVVDRFSKYAH
LMALTHPYSAITVAKVFMENVYKLHGMPATIVSDRDNIFLSQFWKELFKQQGVNLQYSTAYHPQSDGQTEVVNKCIEGYL
RCMTGTIPAQWGRWLSSCEWWYNTNYHSSTKKTPYEILYGMGPPVHIPYTPKDSPVEAVDQYLTQREDMFKLIRSNLLQA
QNRMTQQANKKRSERMFSEGDLVYLKLQPYRQKSVHRRPSYKLSAKYYGPYTIIKKIGTVAYKLQLPATAVIHPVFHVSQ
LKKHVGNHVVQSDLPIVSAQPLLQPQKIVERRMVKKGNTASTQFLILWKNLPLTEATxEDAEEFGWRFPLFHLEDKVDFM
DGA
>Gypsy-37_DAn_gag#LTR/Gypsy 931-2307  [Drosophila ananassae]
MPDPEENVAQKCPLCDSTLDVGKTYKTKCGHVFHQSCIAGYAKSKTTCPTCSTVCFERSDTPAQNTRSNRGQMLDSTPSG
SSGASALGLAQKELIQNTVLDAVKSMQNELLTELSERMARLIEANLPTSFAAVEGSNPEGALGRNSLGQIPLGSMDEPIG
SNRETPRSNHSDLSQRPDKVGHILNSWKLRFSGNPEGLSVDNFIYRVEALTRQTLEGNFSILSSNASLLFEGKAREFYWR
YHKNTQELRWDFLCTALRRQFRDARTDLDIREAIRDRKQREREGFDTFYDAIEELMDHLDMPLTEMEVVEILKRNLRPEI
RHEILNVPVRSVENLRAICRRRESFLEDVRKSQGYQKVVPFRKQVSELVEEMMDAEEFAEGEVNGEVCAMALLCWNCRKE
GHRHKECRTKRKVFCFGCGAPNNYRHTCPNCLKNGKANAFSGRQQASVPKDKSTNGDLN
>Gypsy-30_DEl_gag#LTR/Gypsy 55-1077  [Drosophila elegans]
MSTWVYLATKADLIEYAREFGLDTTGKVEELRQILSAFAKNPNHTETIRQRLGVLAEKHKKEKGATDQSSTPAEELNTMA
NQIDIRVKQTNTPPRRESETPDIPDRKEQKVEVEILDRVRSWGIRYQGATNPLEFISKMEEWAKGYGIHKDALIQTMPFI
LEGVAVDWWNTTPSQIRTWEDLREELLEYFLPPRYQEQLETQITQLRQRETELTREYAMNLRKLMRFTEYSEETKLDRIY
RNCRSKIKLYTRRSGFKTLTEFLRLAEEVEEIETMEGTNRPITTGNQNLTSEICIRCGGTGHAARTCTNPPRLFCWVCGR
NGTRTTECCRAGAGNARGLSR
>Gypsy-28_DAn_gag#LTR/Gypsy 373-1707  [Drosophila ananassae]
MQWNELYTELNKLKTDFDKSYKSLTQNRTMQQNTIHKHAEILVARFNKARVLIYDQRDRLDKNRWSQVSKFLTRLRSNLI
NVKERYDLAISVPSILNTPSTVEPGDELELPTTDQVELEDLESDRLEIEEKDLNNLTIPAVLLQSELSDQDEEDIDSNNI
IDQKPIIMADETIAQRAYIKDISNAIPEFNGQKLNLQRFITALNLVNLTKGTFEHIAVEVIKSKIVGSTLYKVQNETTIN
GIIKKLKDNIIGETSDVIKAKISKTLQKGKTAEKFTTEIENLRKLLEASYIDEGLPAEHADKFSTKEAINTMTKNCQHGR
LKTVLEAGNFSTMNEAIAKYIQCSTDITGNPSTILYNRRGQPYHNNVRGNSRGRGYGRGYYNNNYHQNNGYNQNNGYNPN
YNNHTNNYRGRGNSRGYNRGGNNGYNNTGGNTNSKVRTIESQPEN
>Gypsy-34_AMi#LTR/Gypsy 53-3901 via tfasty with Gypsy-169_DR, 5 frameshifts and 6 stopcodons. [Crocodylidae]
MEVSVVAAAAGADQIQQTLHLMGQVLQQQQQQSAHQLTLEESWIQQQAWHQRNAVELKVPKMSIHDDPEVFLESFEWAAL
AARLEKSHWAGQLGVLLIGKAQAAYGAMTRDEAMDYDKVKREILYRLDINPETYQQVFRAKKKREGPTTTRxFVFGVGDG
TNVPGLYxLDAVNTSGTALSIEDMGITPGLGEPGGVESMDCSIGREIKGSPLPQPVVEAWVGGKRFEAIIDTGCAHTFIQ
NVLAPGSMLRKATPVRMTCMHGHGTHYPRRVYQVTMLKTTREMPVGVARDLPYPMILGxDWREIYEVLNIVREDRMGEAG
QLGSEKDVPAMESFDVEGLSSRKVFQRAQAEDExILGLIETELAKEEEDVVDLGCYASLPRFEVRRGLLYWIKKGVQEGE
EIPQLLIPHQFRAPLLKLAHENPMGGHMGCSKTEARLTKWCFWPKMYDQVESFCRACPACQKVSWNKPARALLQPMPIID
MPFSHIALDVVGPLPKSSVGYQFLLVIIDYATRFPEAVPMxAVTGPSAVEELLKWITRVGIPKEIVMDQGSNFMSGVLRS
LCKVLQIKQLRTAVYHPQTNGLVERFNGTLKNMLRWCVQAEPRKWDLMIPPLLFAAREAPQSSLGCAPFDLVYGHRPRGL
LDLVREGWEETPPKGINNVEYVRELRQRLQRAGELSWEHLRVAQRAQKTTYDKKTQERDIRVGQKVLVLLPDAESKFLRC
WQGPFEVVRQVGPVDYEVFKPGHRKEKQIYHVNLLKEWREQEGLLVDPSPPDEEFGRDLGADPGQNAGAVTVPVGTQLSA
RQQGQLRNLAREFQDVFSEIPGCAKGITHQIITPVGQIVREKWRRIPYYRYQAIREEITKMLEQGIIQESRSPWHSPIVA
VTKPDGSLRLCVDFRKVNAISHFDAFPMPQISELLEKVGQARFISTLDLAKGYWQVPLRREDMAKTAFGTPWGLYEFRRM
PFGLHGVAATFQRLIEWVLAPHQQYAAAYIDDIIIYTQGWEEHLEAVRAVLQELRQAGLTANPKKCILGKAETKYLGFMV
GQGHIRPLADKVEALRHYVPPQSRKQLRAFLGLAGYYQxFIPQFAEITAPLTDLLQGKGKGPLKWDFVSRQAFEKTKNAL
CQDAVLETPDFESPFILQTDASDRALGAVLSQEVDGISRPVAYASRKLNPQERRYATVERECLAIKWGVNYFRYYLLGRE
FTLITDHAPLRWLKTKQTDNARITRWALTLQPFHFNIEYKPGKTNTVADFFFRDAMKKKSWRNKATRRQSQPSCFMARIR
LTAS
>Gypsy-35_DWil_gag#LTR/Gypsy 455-1963 via tfasty with Gypsy4_Dpse_gag, 2 frameshifts. [Drosophila willistoni]
MSVEERDRISKIRKFRRSSEYLKNRGTEVMGPPITRSQSENRADSRISNVSPPTDFNMSTDRKINEEDGAVGGSGAIPKH
NMGTRMIHQAPEDGSYMGPENPRPALPTEITSAINLAVAQAQETYRATMSAENSRLQAQIRQEMLGFMKQIREAVQEAAQ
QSTTMRSTNVQGERAPIHPTEAIDHRVLERQQRENLESRPPQRSSWHWPEDTRQQSGVPITTEQRPEIVHPRRWGLVFDT
GIPINEFIFRLEHLQTAYQVSWGEVLRDFHCLVEGQAKDWYWMHVRSAGPADWPNMKHALQQRFQTQRSNFERERELRER
RQRTGESVDEYLQAMFSLRSRLESNFSDHDLIRVIKVNIKDSISKIIYPIWITNLEKLREECHEAERLLATRWSRASGGA
EPHRRAEGSASTNKAVLAEPEGHEVEFVEAVYKPREGSKDRPELACWNCAEKGHTFWECESVVRKTFCYKCGLPGVVLPK
CQAGNAMRSKTKEELRSGPRKNE
>Gypsy-34_NV#LTR/Gypsy 203-4258 [Nematostella vectensis]
MAKSLPTPQPLEMQGDMATNWEIFKDSWENYIIATELNKKSDAIVVATLLTVMGKDCYRIYKNLPLTDDERKSPTSILEK
LGEEFQSKRNIIYERYLYFCTVQEPSESFDRFLNRLRDRIATCKYTTLENEMLRDRIVFGVNNSDTRERLLREKELDLDK
AINICRTSEMAVRQLHKMEPTETVHYTKQNKSKSKPRQITECKYCGDSHAAGKCKAFGQVCSKCSKKNHFARVCMSTRQD
HKASQPQQKPDKQARRGKQDVHQLEESSCSDDDDEFSSNDSLYTIQSNQKKRQYFAQVLAVTGDETARQSIKFQLDTGAT
CSTLSLNDYNKLTKKQPEQSQTELRAYNQSTIKPMGQVKLHCTANGITRKVHFQIIKEAPTSLLSGRVCEALKLLEFNEE
CVHQIEPGPKEPLTKQHVLHDYKDVFSGLGRLPGTYHIETDPTVKPKQNNPRRVPIPVQDELKKKIEDLEEMGVIAKVTT
PTPWISSMVVVRQPNKLRVCLDPSELNKAIIRNHYPTPTIDEVSPKLTNAKVFSVVDAKDGFLQVVLDEPSSYLTTFWTP
YGRYRWLRMPFGIKSAPEEFQRRINECIEGLPNIAAVHDDIIIYGTGETEEEAMACHDAALKDLLDRCREHNLKLNPKKL
KFKLDRVTYLGHVLSADGISADPEKVKAICEMPQPVDIAGVQRLIGVVTYLSKFLPQLSTVAEPLRRLTDKDAVFDWLPQ
HQEAFEKIKMMITKAPVLHYYDVNKEVTIESDSSNVGLGAVITQEGHPIAYASRALTQTERNYAQIEKECLAIMYATERF
EHYILGKENVRVLTDHKPLVTIFKKPILTCPKRLQRMRLRLQKFSLAVEYKPGPTMYLSDTLSRASLPLDHARPDTPAYQ
IFQISEEEKIREEIEDIDMQESLFVTDERLDNIRRETAKDPSLQTLMTVTKQGWPDNKAEVPTCIREYWPYRDELSTQNG
LAFRGTRIVIPTTMRTEMTTRAHASHLGIQYTTNTARDIMYWPGMSADLTEAVQRCSTCQEMQPAQQKEPMMTHPIPQLP
WQAVASDCLEVQGEHYLVLVDLYSDYIELVQLPDMSSKTLIQQMKPIFATHGTPAVLISDNGTNYSSQEFQEFTKAWEIY
HVTVSPHHHKSNGKVESAVKIMKRIIIKAKKDGSDLWKSLLEWRNSPTPGTSSSPAQRLMSRRTRSMLPCSQALYKPEVQ
AAVTEQIIQKRKQAKHYHDRTAKSLPSLVVGQPXRVKVHPQQAHSNWKAGTVVSMATTPRSYVVQVNGRTYRRNRVHLRD
AQPDLSAAQDHSAPEPSHDATKSSGMSTCSPAPEPSGPGPLVATTTVLTEPVVTRSGRVVKPPQRLINAQS
>Gypsy-10_CSa_gag#LTR/Gypsy 56-724  [Ciona savignyi]
MENQDAVPQNTVSLKLPTFWSAQPRVWFQQSEAQFALRKITSDQTKYYYVVSSLDQQTASRLLDLLEEPPELEKYRTIKQ
RLISTFCDSEYERAAKLLKITELGDRSPSELMDEMLSLMSGHTPCFLFRYLFLQNMPDEIRIILAKENFDNPRALAQRAD
ILWQARNSMSCTIAKVRRHKPLQRAASPAKPQGLCFYHHRFGDRAHKCQQPCTYQGNASAGRF
>Gypsy-9_SMo#LTR/Gypsy 346-6078 [Selaginella moellendorffii]
MAQPANARMKYPTFTQTDDPDAHVTAFENVSTANQEQADAVRVRLFPATLLGAAAEWYGQANAAAAFAAWADLKTAFLNA
FRPMGFKQRISDELNSIQLLPGETLQNYVLRYKRLLARKDPQPAADDQVRWFLNGLPFEIGFHVKVQRPADLNAAVEHAA
TWEQAWMSSRNVAAAAPAATYGNLFSPNIAQYQTGVLGAVAAPPLIPVQPSVLQLPAVNTTGFESQLTKVKEDVVETLTK
KMAELQVSLVQGLGAPTRPVHERAEIWCIKCQGYGHYPSECPNLVPAKAPCPYCGKFGHKPEKCFFHPARVTPKFQQQPV
VASYYVQPQFHHQQQFPQQQVQXQQYEMYPVFNVGAPGAVQNSGPMLQQTAGGGRGGGRMGMFGGRGGGRGRGPIVCYRC
GEPGHIAPNCPNAQKSEEYQPICGICQTQGLHRQEDCPYRLQVPNQRQNQDKGKEVVDTKAIFVNSEELRADTPVWNVNT
RAQLQRRDRGLYIRDEPRTRAEQGIERMHTREDPEMIARRNRKEQRHKEKVGIDLGLEGGGIQDAPIADGGDLAKNITGT
IQCPNDGKEMDANQVSGGMDPQEVMRKVGISTLQRLAEVFKEHFGGEPLKMGQQRSRRYKQVLNLETQPYDVLKDLENQK
PSITFAQLLQLAPSLRKVVATAVKAHREVVVNAAWPMIEAENPIIDAEISGQHLKGCVIDGGAAINVMPEQMVSKLGLEQ
LSPVHFRVRMANHSRSRPVGVLTGVKTEIAGFIFYVDYVVLRMVGHELDYPILLGRPWLLQAWADQSWPKGTITIGDGNE
SRTIQVRTRRRPAWTPVACEPIVDGIDDSSDTTTGSEAGERMSEVCSEQSRSNDESSVEVAAVEPCSGYDALLLSPFEDG
TASDRLKHWLFGGDVSCGMVQVEDLEPVVEQERLQQFPRHFYSEVIDGSVPEIDEEPAIQPGGRGSSRYTAQPIVEEMNL
GSAEEEKVVKVGANLPVQVKERLRRLFYRYLDVFAWSYRDMRGVDVKLAQHRIILKPGAVPIRQWPYRMNPNYSKTVREE
LEKLLRAGFIYEVETSQWLSPIVVVPKKNGQLRVCVDYRKLNEATEKDGFPLPFTDTVLDAVAGHELYSFLDGFSGYNQV
QIAEEDQLKTTFVTEWGCYAYKVMPFGLCNAPATFQRVVTAAFQPYMREFMEVFLDDFSVYGSELAHEGLLEKCFERCRH
YGISLNPFKCQFWVTHGVLLGRIVSREGLAVDPAKTQVIMQLVSPETVKQLQAFLGHVGYHRRFVRNFAEKALPLTSLLK
KGAKYEWTAACEAAFQRLKLALVNAPILKMPDWNLEFHVHVDASAVAIGVVLCQRSDGRADHPICYSSRQLSTAEKSYSA
TEREGLGMIYAIQQYRHYLLGKEFVFFLDHQALKYLIGKPCKTGRITRWLLLLQEFQFRIVLKPGSSHQMPDHLSRLPPQ
DSDEEVGVEDDLPDAPIFQFETVPDWYAEMVKFLGNGEYPAGLNNRQXRRLLLQSRLYTMVGGVLYRIGRDSVLRRCLLP
HETTKVIAACHDSAYGGHFGTEATVEIICRAGYWWPTLRKEVTYYVKTCDPCQRAGKPDKRDYQPLHPLLPVMPFEKWGI
DFCGPFPPARRTGYKYVLVCTDYVTKWSEVKALREDTGKKVAEFLYEQIITRFGVPLELVSDRGTHFLNEAVAALTETYG
VYHSKSTPYYPRCNGQVERTNGTLCRIVTKTCSASRTDWDKRLLDAVWAYRVAFKVTTRFSPFQLVYGQEALLPVELEVP
ALRTAVEHAMDWDGAIQQRLNELERLDETRLLAFQAREALQKRRKKWHDDHIRERKFAIGDLVLLYDSKFWKRPGKLKIR
WLGPYVVVNVNDNGSVQVADLSGNLLPTRINGFRLKKYHPRSNVETAGAERESNVSEPSESESRMTRAEAS
>Gypsy-10_PSo#LTR/Gypsy 1432-6109 via tfasty with GypsyPi-1c_pol, 1 frameshift and 1 stopcodon. [Phytophthora sojae]
MNYAFDCILGIPWLARYQPEIDWLARSVKRRRGFDVREVFTHLLVAPRDWPHVTVVDETATTQAVHRASDGPLCMACAVL
LDDDDVRMTSRGAMTDARSSECAPAQRERVGGRAWVPVAQRDGGRAWVPVASRAGGRAxVAPAQRLAAESVVQPRTAGVI
ERGLSHLEEGESSSSESDASSSSTRSKRRKKSKRRRLKPRREPSATENPPKESVCALEYVEGAPRRSRVIEVASPPRDAN
AITRLPGLSWKNFLRDLKAGEIEQVCLITEAVPVDTLHAVKVEDAPSRPKRAEPKSAREERFAAQSWEALRESGNPVYET
AREYADIFPDEIPAELPADRGVRHEIDLAPGTKYCVTRQWPLPRDQVKAIDDFFESRRRAGHVRESISPHSSPTFCVKKA
TGGWRIVHAFNKLNDATIPAQTPIPRKDMVLDSMAGSVIYSAIDLTDGFYQILMRECDIPLTAVSTPSGMLWEWLVMPQG
LKNAPATFNRMVSHVLRPLRDFAPSYFDDIFVHSRAEGDLSAVEVHLKHLRQVFQVMRENKLYANLKKCVFCAPEIPVLG
CYVSKDGVRADPEKVESICSWPTPTSPTELRQWLGMANYLHKYTKDYAKLIQPLSSLLKKDTTWSWREEHQAAFDSVKRS
LSSAPVLMLADDSKPFHVVCDASDFAIGCALMQFDDEGRERVISYQSRQLKPAERNYPVHDKELLAMRYALVKFRVYLLG
EQTFAVYTDHASLRTAMKSPHLSQRMARWLSFFSEYNFVVHYKPGKNNILADALSRRPDYDPREGLERQAADEDDEDACA
TCVTSGLNLTSVAPKMPLRDEIAAAYERDAQYASILAHLRSPSEATLKALSRSTRSHVERYRLDGSLLTYTIDRFDAPRV
VVPNDEDLRARIIHEYHDAPIGGHLGREKTFAAVARDFFWPHLYKWVRKWVRTCEICQRVKPSPSSQAPLRPLPVPTEAW
RSVSMDFVFGLPPDSNGRTGVLVFVDRFSKMVHLVPVAATVTAEESAAHFVDAVFRLHGLPDSIVSDRDPRFTSAFWTEL
FKLLGTKLAMSTAAHPETDGQTERVNRVVEDVLRSYATSFPSWSAFLPLTEFALNNAEHSSTGMTPFFVNSARHPRVPAM
LAVGQPTEARASTLGGGGATAEDSPPTETPAEPSPVDSPASPRFPVTESSANAVTRSQVKKALAAPRRAVTPLADWTERT
LIDPAGAPATMQQPATTANYAPKSSASPTDHLAVSEFVQQRQAITRFVRDALQAAVDRQKENADKRGRKNKTSFRTGDRV
LLSTEGIRSSAVTNLGANKLAPRFIGPFKVIKVLGDAYTLDIPSSLRLHPTFYVGRLKRYHPADIPTSDHQDSLAGNVPE
ATRDANTHHPSLYRRDGPPPMPRMQPSPDDGGAPPARSIRRDSSATASAAIAECERSPQVPSASSARSGLLHPSLYRRDG
PPPIVDSAGEARWIVDRIVHHEDPSRANGRGRNPVRAPRAIPAARRYRVRWLGFPPDEDTWETRAALLRDVPDVVRDYEA
KVAAAEETTELPAEAEALSERDDGSGPPPQARGGVHRED
>Gypsy-12_NV#LTR/Gypsy 70-3985 via tfasty with SUTRVLEP_pol, 2 frameshifts and 1 stopcodon. [Nematostella vectensis]
MAESGEMYHRAPGPLVLDANASENWRKFLMQFEIYLVAKGKDDKGDKLKVNLLLNCAGPSAIEEYSHFVYTAGESNESYG
DVCRKFHELCRGAKNVIYERHALQSxKDELRGELLKKPDLTLQTAHDYCRTYEATELQKYKFVPQTVVPSKTVSVQPVQV
KKEQPSCKFCGYRHSFAHPTRCPASKRNCKICSKTGHFAKMCKNKQKKDPEVHVVEQEYDSSDSNETHTYFGSIEVGSVL
QNQQPKKSLIKVMIAGKEVKLKADTGAEATVIPYNLYKSITNKPLKRLHQPLKGWLATKPIYPKGCVRLPTQYKDRKIDL
LYLVVDGEFTPLLSCEACLDLEVLQFMDLTLLDSPSAQTSNIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKVH
LEVDSAVTPVIHAPRKIPVSMLDPTQQKLREMEEDGIIVKEEEHTPWVSSMLVIDKRKGKEKKSPPTKDNIRICIDPRDL
NRALKRPHYPMATVEQVANKLTGAEIFSTLDACSGFWQLPVDEESSKLLTFNTPWGRYRFLRLPFGISSAPEIYQREMDR
LFAGVPVEIIVDDFLIHGGNQCELDDKMIAVLKRSREIGLKFNPRKAKLRVPEVSYVGHLFTADGLKPDPEKVRAINEMP
APTDKDGILRFLGTVNYLDKFIEHKADLQGPISQLTRNDTAFVWETPQQHAFDKLKAVITSAPVLAYFDNTKETVLNVDA
SGTGLGAVILQDERPVAFGSKTLSPAETRYANIERELLAIVWGTEKFHTYVYGRRVVVETDHKPLEAIFKKPLNEAPPRL
QRMLLKLTKYDLDVRYVPGKKQFISDCLSRAPVSDTKPVSEPEEMIGINLIDSLGVDSSTLQKFKEASNCDVTSQVVMEY
VVKGWPAEKHQLDELAREYWSLREELSVEDGLLFKADRIIVPRSLRGEVLEEIHGAHMGENKSLSFAREYVFWPSMTAQI
KDKISSCSICNAFRNQQPRETLLPREVPGLPWQVISTDIFEYAGHSYLLVTDLYSKYFEIELLRQTTANCVINNLKKIFA
RFGIPVEVLSDNGSQYSNTRNLFNSSHEFKKFADEWGFRHTTSSPEYPQSNGAAEKAVQTAKRILKKAAADNKDPFEGLL
KYRNTPFDDLGVSPAQLLMSRRTRTQLPTHRRLLLPQPVDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKVRIRPN
REAEWRKAEVLPRSYLLGDERGRVFRRNRRQIISTPNDQSMSTSPFVIPAIPQLPPESTNNPTQLSNNVTASPTPPKSSE
RQHETTPMSTASGRVIKKPQRLIEHC
>Gypsy-12_DBp_gag#LTR/Gypsy 51-842  [Drosophila bipectinata]
MANNDAPQDDAEVFHDTVTRGVDAVINRVAVKIPPFWPEHPELWLSQIEAQFVLAGITSDETKFNTILASIEAPVLARIA
DAIVNQPRTGKYENLKSCILERFCESEQKKIQKLISETDLGDKRPTQLLNELNALAANKVQESFLKALWLQRLPTQVQAI
LQASDASLANLAKLADKVMEVGDFHQVRTVDAKSAPTSSAVSDDRLDRIEQQINALFRNRSRKNSLRTDRNSVIAGDMCW
YHSKFGNAAKKCRQPCSFSSEPKN
>Gypsy-9_DBi_gag#LTR/Gypsy 70-1371  [Drosophila biarmipes]
MGKKWIYRLKKEDFAQVAQRLNVALDGRLEDMRRTLSEYYSETENDPQLADIWAELEAMYYDRTGPSITLTNAEGDNLVA
SLSVDNLQREAHRRESSQDRKTTVLTSRHSQADYARVAKQVREWSFRFDGAEKPFEFLEQVEWSANTYGLDLDMIPRAMP
ELLKGRALKWFIANNKQWKTWAEFIESFHLYFLPRDFFTRLSDQVRQRKQGFSESFKDYMIDMQTMSRPLNYSARDTLKI
IKENCTPSLRIFLRAYKVPDLDTLMLLADEYEELEKEREAFAQENKFSKAKSSPPTQVTCRRCEETDSQETRRNDQFSPP
QRVPRQQATGAPRGGQWTPPQQQQIQPANTVWRPPNTTQRPRGTTHIADPHEACRRCGGHGHWARGCRLQRLLFCWVCGR
VGVRSVECCQQAGNAQRPQPQRGERGSQDATSPN
>Gypsy-8_DPer_gag#LTR/Gypsy 844-2358  [Drosophila persimilis]
MPLSRSPENFAQIENQGIICSTCAKEVDYLAQLITTSCGHQFHRVCFNRKAGAKKICPVCHVSLHASALNLAEEIAAAQT
ASQDPSSTMHQTRSKGRATDPNADAPSGSTVSETNSEVQMEANAASTNAGLHQVIADALAAAMQAQTHILAQTIETGLQK
LSIQQTASRESIESVRSQPINTQTIDEVEQQTFQQLFGGSSERQTAREPPARYSLGGTPPVSELRADRISQIISNWKIRF
SGHSSIGVDDFIYRVNAMTNQSLNGNFELLARYASNLFEGSASEWFWRYHKSVPLIRWSDLCVALKTQFKDGRTDLDIRS
AITQRKQKPNEPFDLFYEAIVALADKLVQPMTEPYLLEALKANLVPEIQHEILYVPIKSIAELRHIVRTRERFLQNLSKS
TTTLQRAASKRHINEMHQTFSETDDDADGVDDASIDAMTLNCWNCGKLGHRYQECTGERRVFCYGCGKADTYKPSCRKCN
PKNLAARAPLISARRQMVSKATNTE
>Gypsy-8_BG_gag#LTR/Gypsy 166-1275 [Blumeria graminis]
MVPIEEFRELQHQFKKLLEKQSCKPTSTKRFIIEKDPPPSEHTSLKPTKLPEFIGIRAEYPAWRAAVLDTFGMDWNLFGY
DNSRAFLMIYNALKGTARTKASSFYEAGGVRNTRDPEDFIEFLDRLFLDSTRISRAKTELQSMKMEDKQHWSDFLASWSN
KLTEARGDFWPDDNKISLLQNALNKKLTMALASNHMLPDDDFNEWVNIVNRVAQQLEIAESRFYGRRDYTYPDANLWHGN
RDKGRTIGNNGINWLPHNQISDNFDSRFSNLRKDGAVDKSGDTVMGGVNAMGVVKDERRRAMWKTKSQLEILRQEGRCFR
CERKGCITRKCPLLPALKPRGNSVRVTSTSLPEIDPSMYYVEEVEVESEN
>Gypsy-8_Gav#LTR/Gypsy 50-4216[Crocodylidae]
MEHQPILAGPDTLQQTLNLIAQVLQQQQQQATRQTAIEEHLIQQQVWTQRSPLDIKMPKMTKEDDPEAFLEVFERAAIAA
GLEKARWAGQLGVLLIGQAQAAYRAMTWLDAQDYDKVKGEILQRLNIMPERHRQAFRGRKRKEERVPRLLWQNLTDLLNK
WLKPKTATKEDICDQILLEQFITDLEEGTQRWVRCHCPKSSCEALQLAEDFNMAQGETHRDQGMRGVSYMQEADRKGERE
GRENQKGSPARPICFNCGRWGHIAQECSRSPWVTPRSREVKVEHTDLRAGSREGHEMEMMDCSIGDSLVGKVQPLPQVTV
WVEGRPVQAVVNTGCAQSIVRPSLISWKQTPRYAGVKMVCLHKQKAYYERRLLHLQVKGVSRRIPVGLEEEILYPMILGR
DWPEIYEIIASLRSPEDTKEGLVGANVGRDEELDVERLASSSQFREAQENDEELWALQEADQGKQDQQVTHPNQSKPVPQ
CEVCNGLMYRIRRGKAEGEEVTQLIIPRPYRVQLLHLAHQNPLGGHLGKTKTEARLARWCFWPHMYEEIEGFCRVCDICQ
KVSNYKPPKVPLQPTPVVREPFARVALDVVGPLPQSAAGHQFILLLIDYATQFPEAIPLRAVTGPRVAEELMKWVARVGI
PKEIITDQGSNFMSIVLSSVCKVLQIRHLKTAVYHPQTNGLVERFNGTLKGMLRRCAQLEPRKWNLLVPPLLFAIRDAPQ
ASLGYLPFELMYGHHPRSLLDIVREGWETDPETGRVASEYVRDLKERLQLVREVACENLGLAQNKQKERYDGWAKERELK
VGQKVLVLLPSSTSRFLTCWQGPFKVLRRMGPVDYEVSRPGHRRERQIYHINLLKEWHEPEGLLISPDPESEEFGRPVGE
NPSKSGDLGGVPMGSQLEEGQQEQLQRLVQEFKDVFTDSPGKVIGVEHKIVTQEGHIVQEKWRRIPYHRYQPIKEELGKM
LAQGIITPSRSPWRSPLVAVPKPDGTLRLCIDFRKLNALTQFDAFPMPHVSELVERIGQAWFISTIDLSKGYWQVPLRTE
DQPKTAFGTPWGLFEFKRMPFGLNGAAATFQRLIDWVLALHQGYTSAYINDIVIYTESWEQHLKALRAILMELRQVGLTA
NPKKCALGKRETKYLGFLVGQGCVRPLADKVRVIKEYHTPQNKKQMRAFLGLAGYYRRFIPKFAEIATPLIEAIKGRKSY
HLEWNAVRQKAFEDLKQALCQDVILHTPXFLLPFTLQTNTSAFALGAVLSQEVAYAXRKLNEQEKXYSTVERXCPAVRWG
VXYFXYYLXGHEFKLITDRAPLRWLNTAKTDNARIMRWVLALQXFRFCVAYRPGKMNAVADFLSRCEEDGPXRIQEEEEG
KEANAPKEXQVRQELEAPSGVLRGGMCER
>Gypsy-9_BG_gag#LTR/Gypsy 247-1815 [Blumeria graminis]
MSDKYKTPKPYLPPPPTSDVESEAENLHHELSPDRITSNIEIPNVAVRKGKPRISEVNRRVDELTVAQNETGREMADAIV
DTAYKQMSRHHELEFTNRQQQSEIEFLKTKMARLEKLIESASLNPSLSRPNPMPRSSECQNAYSPTTRQRFQDEEEEEDI
LRPSISHYRTQKSQTREGPIDYDHIIPSVERGATRRIEYQRQSTARLRSSEEPNFQGPPFAKYRDPSETVGQTYGNVRLG
TADRIINPIREFGGIDDLDFFENWLILLRGRIQDNDGHWGSDRRIMNFIFASTKAKAQEMLVPYFSGKDVENDFVNSVQM
VNHLIASHRSSTLQRDSMVEFESLRQGTYESFQNFKTRFLSLAGKAKIHHSLRRDLMYGKMNRQLKLAVYTQLHRCPDFN
SLCEFAEPVDKERIRLEKSSTYKPEKLNSSRRLYQPESSTLASNRQPNFRPDSRQEQKLGIDVTCHYCKKSGHTKSECPF
RIPNNRHATVQVVAEESSSVDSDLCSEDEVDILENDPKGKVES
>Gypsy-9_AA#LTR/Gypsy 88-4117 via tfasty with Gypsy3_Dmoj, 1 frameshift and 4 stopcodons. (could have a foreign insertion) [Aedes aegypti]
MDTRIKPFQTTLESSQLPLAWAKWKRDIECYFESEKIEGQYEKRSKLLYLGGSDLRDIFDNLPEVETVSMVLIDPPYYDA
AIAKLDAHFEPYRRRTYERHLFRQITQKSSERFADFVLRLRTQVKRCEYDKPEEMILDQIVEKCYSDKLRQKLLKRDMLL
TEVEGLGTSLEESERKMKEFGKHCEPSDPISKVTKWKPEHTKRDSAGKLLxFCFKMNRNVSVILGTSFSTGRTQQSFQGK
FRSIPVCYACGKRGHVRGSDFCPARSAACLKCKGTGHFAKQCLKRVNDSNRNPIPTKRIRVVQDDNPDKKDSEYIFYAMG
ENIFMFNVGGIEIPMVIDSGVAANIISQKTWEEMKCMKVSVWDMSTDVDRNFTCYASNEPMHISGSFMTMIQAGERKCDA
KFYVARSGQQNLLGDETAKALHVLKVGFDIGSVSKSPQAEFPKFKGVTVEIPIDETIQPVQQAFRRAPYALEDKVNEKLK
TLQEQGIIERVTGPSSWVSPMVPVLITSGDIRLCIDMRRANQAVIRETHLLPLVDEILGSVTGAKRFSKIDVKDAYHQLE
ISERSRPITTFITKNGLFRHFVQNISFRYKRLMFGISCAPEIFQKTMKSILAGLEGVIIYLDDVVVFGSTEEEHYNRLQA
LLKRLQEYNVLLNKDKCIFGTNEIEFLGHVLSEKGVSPTESRIEAIRKFRELKTVAELRSFLGLITYVGRFIPNLAAKTE
PLRMLLRKSAAFSWKAEQSKAFNMIKEAVCDIRCLGFFDRRDRTKLIVDASPEGLGAILLQENKDGQNRIISFASKALTD
LERKYFQTEREALAIVWGVERFSLYLLGTKFVLITDCKALKYLFSPRSRPCPRIERWVLRIQSYNYEVKYEPGVTNLADA
LSRLSIETKNHSIQQPSVTLRGKxPSSFYKISKPVFLLKIEAMFMKIYHCIALTVCNAMIDFYNVSLKFERKNWFLVFDD
CxxLNDGFLSLNYLLDNSVPEAVTLTQVADATRNDKTLQELLKALRSGSWSDEIQMFKCFKSEIHSAKGVLLRGDRLIIP
EALRLQVLKCAHDGHPGMTVMKRRLRQKVWWPKLDDSVDKFVKQCGSCTLVSAIGPPEPMLRTRMPDKPWGEVAVDFLGP
LPSGHSLLVLIDYFSRFTEVIVMKQTTTDLTIQALFETFSRFGVPEALKSDNGPQFVSDSFKAFCREFGIEHQKTTPYWP
QTNGEVERMNNTILKRLKISQAENPAKWKWDLRSFLLMYNSTPHSTTGEAPSALMFGRILRDKIPSILNSNRPWVEDIRD
RDWERKVSTAESADHDRNALPNQLEEGDIVVAKRITKENKLSTNYNKERFKKVNRHGSEAEIR
>Gypsy-13_BG_pol#LTR/Gypsy 1246-5157 via tfasty with Gypsy-20_BG_pol, 2 frameshifts and 2 stopcodons. [Blumeria graminis]
GKLVASEKSRAQRPMVYDSFGVNLKKEPSLREILVAKKRMDSKPFLIDTFINDQFFLPALFDSGCLPYAAFSENIVQKHK
LPRITVQQRNLQLAKNDKSPHKINQITYVTLDINGRRERLWGYVIQGLHYDLILGKGWAERNNVVYQAKTHTLYVNKGNQ
QVKILEKGWMECGDVVNRTKYIREGKLISALAFSAFTKKAQNSLQDLTLALVSISDINKALQKLDTKREKPTIESVGKKL
PKQLVRFEGMFLEDESCELPPHRAGHDMEIKLERDESNNEKKPPYGPLYEMSKEELLVLRxTLADLLDKGWIRASSSPAS
SLVLFARKPGGGLRFCVDYRGLNAITKKDRYPLPLIRETLRQLTKARWFTKVDVRTAFHRLRIKEGDEWKTAFRSRQGLF
EWLVCPFGLCGAPATFQRFINSTLQEFLDVFCSAYVDDVIIYSDGDLEDHFKKVSKVLNSLKTAGLRLDLDKCAFGVTKI
KYLGFIIEAGVGVKVDPDKVLAISDWEEPNNVSEVRSFLGFSNFYREFIPRFSSVCEPLNNLTKRGVLWQWGKPQKNAFE
RLKQLLISAPVLSMFDPEAETILEADSSGYAVGGVLSQVDEKCRLRPVGFFSRKLLPAEANYEIYDKEMLSIIATMRHFR
GELRSVDKPFIVLSDHRNLQHFMTTRQLSERQVRWAEELAGYNFNIKFRPSSDSAKPDILSRKAEFRPKDANDEIFRKRE
FQLLKDSWLLSKSEKDGLLSSLSLSAVVTRQQARSHEVATNKALSELPKEPTRVSNSANGPPKGIKLFEEPELQKLWNRA
VEKDSSFREVYTSLERGDRLLPQSVGSSMQIIDCSFDDKHALVYRDALWVPNWEPLRTALIQKVHDSHMTGHPGREITLS
ILSRSFFWPQQYKDVRRFVRNCHVCGRSKVWRQPSRGLLRPLPIPERFHSELAIDFMTDLPVTDKKEKFLMVIHDRLLGS
ATLEAMETMEAEACADKFILSHWRYHGFPNYLTSDRGSNWVGHFWKRLCQRVGIQQRLSTAFHPQTDGGTERMNQEVLTY
LRSYISYAQDNWAKLLPPAMVAINNRTSSKTGFSPFFLTHGYHLEPIRRRSTLLSSGTNPKARADAFINRLHDGQEIAKA
AMKTAQQIMEHNANRGRRPAEKLKVGDKVWLNLRNVTTPQQKKKLSWINAKCKITREVAPDVYELDVPSNIHPRFFVDLL
CRDSDDPLPSQATDDSQPPPLLDGKHPLYGVEKVLRAQSFRGKRFVCVKWIGYKETTWEPRENFVLTDAFKSFIGKYGDx
DDVGDSNAGSYTGSRSKKRPLLHQ
>Gypsy-19_DEl_gag#LTR/Gypsy 689-2056  [Drosophila elegans]
MTEQDLADRLANLTGPSSASSTQINTRIMTERDIEEKIKTVLETNLSSLVKEILNPNKDFSKYTDQTIKRELTHNLSELD
KLPDIVRTLRDFSGNKSEYSSWRKSVERVLKIYENRIGSPKYYGILLAIRNKITGQADAVLESYNTPLDWTAISKCLTAH
FADKRDLKTLEYQLYALNQGNNTIDEYYQAVYQQLSLILNQIGSLDASQETIQSLTAMYREKALDTFVRGLNGNLAQLLA
IKEPHDLGHALHLCSLLENQNARNNQTPKTPYLGRAPMLPPKPQQPYRMVAVKQNFHPHLYHNPNQSGKPPITQTNQFKS
YSQPYTNQSGAVAPYSTPKPPPRPQPKPVPMDVDQSVRSRHINYMNKPANNDYAGKRPLSTANVPNNNKMPRQFHIQPET
ESTAQQNSDEASSSSEQEYYQLVEENNVNELQEEYVWQSDTEQQEYIDMSELYFLE
>Gypsy-18_DWil_pol#LTR/Gypsy 2210-5562 via tfasty with Gypsy6_Dya_pol, 1 frameshift and 1 stopcodon. [Drosophila willistoni]
MSRLYKKANGKPTEGCIQTTSDAPAIVTSNSENVQQSINIVNHKVNVRKSQKLPLRFLSYPERLQHYLTVKDRIFRPDQP
LSKRTLRLRKYYDHARQTKKLFVATIFRNDNDNRSYAEVSFLTFTELGLLDTGASISCIGSDLAQTDFSHFPQLVKTKGQ
VRTADGNGQNVIGMLEVIVRYGRLERMLKLFVIPTLKKRLILGHDFWRIFELAPSIISSIEIGSEKSxMTDPSSYSLTYS
QIRQLEAVKQMFPNASHHLGRTSLIKHHIEIGEAKPVKQRFYAISPAVEKLVYTEIDRMIQLGVIEPAVSAWSSPIRPVI
KPNKVRLCLDARKLNAVTIKDAYPLPSIDSIFSRLPKANIISKIDLKDAYWQIELTEASKPLTAFTVPGRPLYQFTVMPF
GLCNATSTMSRLMDEVVPADLRHCVFCYLDDLCIISEDFSSHLSVLARIAEQFRKANLSINIEKSQFCVASISYLGYVID
SKGICTDPSKIECIKNWPPPRNLKQTRGFLGVCGWYRRFIPNFADLTYPITELLSTKRNFVWTPEAQASMNKLKDLLTSA
PILQNPDFNKKFFLHCDASDYGIGAVLVQLSDAEEEKPIAFMSKKLSRAQRNYSVNERECLAVILAIEKFRCYLELQEFE
VVTDHSSLLWLMRQQNVSGRLARWIFRLQQFKFNMSHRKGKEHLIPDALSRLPNLSIEAIEMGPIIDLDSEAFLDDSYMY
LKKKITENPDKFPDIKIVNKHLYIRTEHANGDSYQEKLSWKLWVPDKLRVDVLKQTHDSHTSSHSGMQKTVDKIRRTLFW
PGMVKDVRDHIRQCDTCKESKAPNYTLRPPMGQHIPTCRPFQRLYIDLLGPYPRSKNGFVGLLIVLDHFSKYHWLQPLKK
FRTEDIQEFLLKQIFHCFGVPEIIVSDNGVQFKANSFNSFLTELGIKHQYTALYSPQSNAAERVNRSLLAAIRSYLKNQD
QTLWDQHLTSISCALRSSLHQSLGCSPFKALFGLDMVTHASDYKPLKELKLLQEPITPLNQTDQLNLLRQDIRENIKKAY
DRNVAQYNLRSKSVSFKEGQEVFRRNFALSKFSQNFNAKLAPKFIKCRIKKKLGNCFYLLENMQGREVGTFHAKDIRN
>Gypsy-19_NVi_pol#LTR/Gypsy 984-4181 [Nasonia vitripennis]
MLLALQTTRPFPRRLQKCSTEVLFRMRKGRRSHKRLPRIPGSFGKRAKGRLYSSGRPSQDGRYLVNVQINQDTVLALVDP
GAVSSFITPETAMIGQNNGWRHGKQETIATLADGSTTELTDYVEGKATTLGATFRNKFIIMKGLRHEMLLGMDALRKLNI
RLIIAGKELQPNRSNTSVLSVSDVGIQEISKDQQTRVDELIQYEKELFGXIQGPTPLIEYTIKVTESNPIKQRYWPRNPA
MQQIIDEAVEEMLQEDVIEPSDSAWSSNIVLAKKKDGKRRFCINFQGINKISIKDAHPLPQVHATLNKLRGAKYLTTIDL
KNGYWQIPLSEESKKYTAFTVPGRGLMQFKVLPFGLHSAPAAFMRLMNAVITPDLEPNVFCYLDDIVIVTEDFEQHLQLI
SETFRRLRDAKLKPNWEKSHFCRKQLKYLGHVVNEEGLHTDPEKVRAITDLQPPTNLKELRRFSGLISWYRRFIPQVAKK
TAPLNRLLKKKVKWEWGPDQQEAFERLKEDLVQAPVLACPDFAKTFVLQTDASNEGLGAVLTQEEEGKERVIAYASRSLN
QAERNYSATEKECLAIKWGIWKFREYLEGYHFVVLTDHQSLKWLEKIDNPSGRLARWAMELAQWDYEVKYRRGKDNTVAD
ALSRQPVAVCNIDIKTNCTWYTKKLTAVRQDPKTYPEYCIKNGALHRHILHTLDFNDTDATEDWKICIPTEKRTEVLREC
HDDLTAGHLGVAKTLQRLARRYYWPGMLQDGARYVRSCINCQTYKAQQQTKAGTMHATNVEQPWEMVSIDLVGPQPRSNK
GNIWLLVMQDRFTKWVELAALKKADSRAIIRHVKEKVFLRHGCPNTLVSDNGRQFVSREFEEFLKENGVNHRKTPPYSPQ
CNPVERTNRVVKTMIAQYVGKHQKKWDENLRELEFAYNTASSTATGYTPAYLNTGREFRTPGSLHQKVGSQHTTPLSSRI
QHIKDAIELAKAQMARQFEKQQKHYNLRRREWKPNIGDKVVRKLVTLSSKADARNAKLAPKYSKPLTVKRQVSPVIFDLQ
DDRGRYVKHIHVKDLKPFTDAEQEL
>Gypsy-20_DWil#LTR/Gypsy 2165-5214 via tfasty with Gypsy4_pol, 1 frameshift. [Drosophila willistoni]
VGGKTIKLLIDTGASKNYIRPMAVLKFITPAEKPFNVRSIHGTSKVTEKCPIHIFGLKAHFFLINIPEDFDGIIGFDLLK
KVGATINLLNNQIVTKNGSEAINFTRCPQVNFIYIDDTDVPAAVLKSFNKMMDERVGAFADPDEALPYNINTVATIRTNG
EPVYSRLYPLPMGVTDFVNAEVKQLLAHGIIRPSKSPYNNPTWVVDKKGTDENGFHKKRLVIDFRKLNQNTTDDKYPIPM
ISTILSNMGKAQYFTTLDLKSGFHQITLAEKDREKTAFSVNNGKYEFCRLPFGLKNAPSIFQRAIDDVLREKISRTCYVY
IDDVIIFSETKEDHVRDIEWVLKSLQDAGMRVSQEKSKFFKKSVEYLGFIVSRDGITTSPEKVQAIKNFPMPSTLFDLRS
FLGLASYYRCFIKDFAKIAGPLTDILKGDNGKVSKNMFRKIKIEFSLEQSQTFSKLKDILASEEVFLAYPDYRQPFDLTT
DASGDGLGGVLSQKGRPITMISRKLRNNERNFATNERELLAIVWSLKSLRNYLYGVRDLNIFTDHQPLTFAVSDKNSNAK
LIRWKAYIDGHGAKIIYKPGKENFVADALSRQNINALEAPDAESDRATCHSEESLSYTIDVSDKPVNCFRNQIVIEQAEF
PSVRTFVLFQSKSRHIIRTSNPGSLLQTLQDVINAEVVSAIHCELPTLALIQHKLVELYPATKFWYCKHIVRDVPDKSEQ
KEIVVTEHNRAHRAAQENMKQILQDYFFPNMGKLTTEIAANCKICSVAKYDRHPKKHKLGTTPVPAYAGEFLHIDVFSTD
KRFFLTCIDKFSKFAIVQPIASRAIVDVKPAILQLVNYFANVKTIYCDNERSINSETIRSLLLNEFGIQIVNAPPLHSTS
NGQVERFHSTLLEIARCDKITTQASDTIDVILLATVKYNRSIHSVLNKKPIEAVHETTVEEGLQIAKKIKDAQSKQMEQE
NRTRIDKKYQRGDKVLVKSNKRLGNKLTPLYKEGIVEADIGTKVLIKGREVHKDNLK
>Gypsy-20_Crp#LTR/Gypsy 52-4164[Crocodylidae]
MQAAEMAATDLMAQTLQAVTQLLGAQQRMMAQQGPPIVRMPKMTTEDDPEAFLEAFERQAIILGLDKAYWASQLGTLVVG
KAQEAYRALSREEARDYXAVKAAILYRLEINPEYYRRLFRAKKGPEERRPRXLLQRLRDLFGKWVNLPTCTMAALVDKIV
MEQFVNDLEERTQRWVRQHSPESCETAVKLAESFMAAEWHYPRERRGPGPAAGKEAERRKPGPKAPTRDVVCFHCGKTGH
FARECPGRSADRWRSQGYPHRPXEGPRDQVQGEPMDCSFGAGKGEPRWERPTVRARVEGRPLSAVLDSGCAQSLIRAELL
PPGQQWQGEPVRVACLHGETQALRRARVRVHVMEFRDEMLVGVAPKLACDMLLGRDWAPLYDVLERVRDLETARXAQWVR
DEWFGEAEAEEPLVDWQDVASGPQFRQGQEEDPELRELWMRARDERHQPETESDGDNEFQVRHNLLYHIRRGEVGAEAGE
QLVVPGCFRQMVWQLAHANPVGGHLGRDRTLGKISRWFFWPKMGEDVARRCAACPVCQKAREDRPPRAPLRPLPVIDVPF
SRVAMDVVGPLPRSSSGHQYILVFVDYATRYPDAVPLRSVTAPRIAEELVRWISRVGVPHEILTDQGRNFMSGVLRGVCQ
TLRIRQLRTSVYHPQTNGLVERFNGTLKKVLRRCVQNDPQRWDLMLPLALFVLRDAPSESLGYSPFELVLGHRPRGLLQI
LREEWEQGPAAVANPSRYQQDFQQRVRRARELAADNLRYAQQRQKERYDSRSRVREFQPGQKVLVLLPTSTSKLLTQWQG
PFEITRRVGPVDYEVYRPGHQKTRQIYHVNLLREWHQPEGWAAFGEGERKDSRAREXTGEGETPIPIKEIKVNIELSGPQ
AEEVRSLLEEFRKIFSEEPGWTRDAYHSIPTPPGVVVRDRWRPIPHHLTQEVREEVKKMRALGVIRPSRSPWRSSLVPVR
KPDGSLRLCVDYRRLNEVATFDAFPMPSVTELVERIGAAKFITTLDLAKGYWQIPVRPEDRQKTAFGTPWGLYEFVRMPF
GLHGAAATFQRLMNQLLAPHAEYAAAYIDDIVIFTRSWGRHVRALRAVLRELRRAGLTANPRKCAVAQKYTKYLGFRVGQ
GTIRPLEDKVQAIRAFRPPQTLKQLRSFLGLVNYYRRFVPRFSELAAPLSEALKGTPRKGLKWTELRLRSFRALKKALCX
EVLIHTPNFANPFTLQTDASEVAIGAVLTQQDAGVDRPVAYASRKLLPAETRYATIERECLAIRWAVEHFRYYLMGREFT
LVTDHAPLKWLSSTRTDNARITRWALALQPFKFRIEYRPGKDNITADFLSRCPEPATSDGGPGKRGGHQRTVKPEAGRPP
QTATRQLAGGG
>Gypsy-17_NVi_gag#LTR/Gypsy 804-2768 [Nasonia vitripennis]
MASEASVNDWVMALSNDEIKREAESRGLNTAVSLAELQRRLAHEVYIERGIVQPDEELPPSGAAREHDDPPPPYQLSTNV
PLLTSSVSGPIATAREQPFHASRTSSPIETERGRDREEQTSTGTVPRVPRRSVLFGDTTQFCTNNQQNNSQRDLGYLTLT
SDGHVYNSTNFQNVQDRPIINHPRANSTTRLAGNNLISSTAMFNTQNQATFNRPSTLAQEVNPNNLISLQTQNLSRNTRH
TGNGYVSTTPREIPARINNFMPPEGQNGYLNNGIARPSHLQLPINNNNNDNRQQYRGAYNNNEQPINTERRLIAPTHINA
FDFICKWDLKYSGRRDEDSEEFLKRLREGRLIMHISDDDLFGILPFFLQGVALQWYRINSDNWVTFEQFENAWRARFSDA
DFQFALMENARRRTQGEREPVADYLTYIKAMFNRMIPPLGPVREINLALRNMLPRLQTRIDKSEIFTFQELEAIAVRKEK
GLMIARTYKPPPSAEDSLLPDLAYREQRPQRNIRQQLSNLELDEEQNRARVEHTEPDFTEDALPDEDELNNLGYGRDKRF
NNNQRQPTNQSPNKNLHNNNRPMTQIQICYNCGKSGHFSRECEGPKRAFCYKCGKIGTRFINCPKCNPTEIFCNDCGLIG
YLRVNCPECTGNAD
>Gypsy-15_DAn_gag#LTR/Gypsy 328-1326  [Drosophila ananassae]
MQSEQASTSAAARHILSDSNMNHFFMQLKQIDKFDGDTMYLALFIKSVDNLITQYKTTSSTQNEIIQGAILNLIVGPART
ILLRNSTQDWNELRTLLISEFNSSKPPHLMIMDLHKIKYQNSLRKFIDDLDKQTSKICNKLSLDNNAANTVIFSRILGDH
IAEVIREKLPLRVYISICKYDISTPTKLKQAAQAVGLYDDDDIYNFSRSVENRYNIPMVSTSNTSNTNNSNNNQRDRNQN
FNQNVGNNRSQNYNNRGTYNYQQRQNTFDSNRNFNSNYNNNYRYSQNPSGQNSPNYNRSVNVPQKQSDQQNRPEPMEIVE
NFQTQASEETQQQ
>Gypsy-13_NV#LTR/Gypsy 89-4165 [Nematostella vectensis]
MAELTGLTSPRMDWNATDLQQALKKFKATVELYFSGPLKSKSEEEKVSYLLIWTGEEGIELVSTWSLTSDEKKKLSTYWE
KFEEYVAPKSNFRLARFKLRTLKQKDDEPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLELDKTLTLA
KAIDIARTEEATSAQLQDIRGTNTIPVHATTHKSPSSHPKTHSRENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKP
NHWAKVCRSTKPQGPTPRGRGRRGNRNKSKQQINTLSNENASTAPEPLDSPQLYFHSLTIDSMSRQITQALVNIQVNSSN
GTLPLLCKIDTGAEGNVIPLSNYKHIYPESLCDIDGKPLSLAPSDTRITAYGGHEVQHYGTCNLTLLHNGQSSPHEFHVV
NTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAKAALLRQYADCFEGIGCFSGEFHITLDPTVPAV
VHPPRRVPEALQEPLRKELESLVQQGIITKVDEPTDWVNSLVCSTKRNGSIRLCLDPKDLNCAIKRPHHRTPTLDEVLSK
LSGSEYFSIVDARSGYWNIKLDQESSLYTTFNSPHGRFRFLRLPFGLICAQDIFQKKVDETFGDLPGVTGITDDIVVYGR
NRKEHDNNLKAVMERARETGLKFNADKCKIASKELVFFGHTLSADGLKLDPAKVEAINNMDPSTSLTDLQVFLGMTQYLS
RFIPNLASTAAVLWDLTRKSSQFQWCPEHQKAVDDIKKLITSPASLQYFDSTKPVVIQVDASQRGLGATLIQDKGPVEYR
SKLLTETERRYSNIEREMLAVVHGLEKFHYYAYGRHVQVHTDHKPLEAIFKKHLASAPPRIARMMLRIQKYDIDIRYVPG
KDIPLADALSRLNPSPGDTIAGLDVSIHELHLHLNASPTRITQIQEETRKDTTLHSLRAVIAQGWPNKRAECPELLHPYW
NYRDELTVADGLVLKGTRIVIPKTLQPDVLQQLHYAHQGAEKCKLRAKGSVFWANINADIDNMVKSCAPCQHNQSMNTKE
PLMPHDVPPRPWHTLASDLFSWNGSPYLLLSDYYSKFPIVRKLTNIQSSTVIAHLKGIFEEHGIPDKLVTGHDTQFTSAL
FKVFSSTYGFIHTTTSPYYKEANGFIERNVQTVKDLLQKCKESGQDPHLAMLCLRTTPLGHTLPSPAELLNSRIYQSNLP
ATSRHALLNKPDYDANVKLQARQDRQKSYYDRTSKCLQPVYPQDAVRVFNPLNSKWEPGIVRAAAPTPRSHIVDMANGST
LTRNRRHIRPTGEKLSLNNTSATDDYEPVAEPAPNGNQPPTEPRTSTPGTPAKSTPTQSGPPLRRSTRTVKPPDRLNL
>Gypsy-15_DEl_gag#LTR/Gypsy 429-1454  [Drosophila elegans]
MEXPSTSAAATAAKATQNLTDVAMNHFLLQLKQINKFNGDPLYLALFIKEVDELVYHYPTTSEAQHQIIQAAIRNLLIGR
ARTLLMRNVPQDWKELRTLLISEYNSATPPHRMIMELRETKYKNNLRRFVEELEEQTSRICCKLSLDNNPSNTVLVSRTL
NDTLAEVIREKLPVQTYITLSKFDISTPLKLKQAAQAVGLFVDKPLNTRSHTSQNSNDDDEYPYFRSXRNFNPNNQSDNS
QGERIQNNNYQNRYNNNQQRQNKFDSNRNWGNNSSYNNNSSGNQYYPRSFQNNQVQNAQTTQSTNIPQKRARTSDSGQQR
RTEPMDTIENFQTTASEETPPQ
>Gypsy-17_DAn_gag#LTR/Gypsy 857-2296  [Drosophila ananassae]
MGVDHSDNEEAGGSSHFCILCNSRIPDKELYKTKCGHGFHRKCMSTHLKSKKTCPTCKATFSGEPIARSDSFIAQNTRRQ
KLISSQTEGESRGSESMEKERQSQERRGEDVQSMVLDAVKSMQHELLTQLTEKMSLMIQSNLAARISQQPLEGATDPSPS
LDQLLGIDAGQVNVRQSRTQANISPRSNASELSQRPDKVAHIMNGWKLRFSGDPGGISVDNFIYRVHALTGQTLDSKFDV
MCGNASALFEGKANDFYWRYHKSVPSVKWTELCDALRRQFRDTRTDVDIRELIRDRKQREKESFDSFYDAVVQLTDSLDC
PLEDKSLIEILRRNLRAEIRHEILNIPTESISKLREICRRRECFLEEVKRDQIYKKGTPFKSNISELLQVEHKESESEFF
EDEEGVIEAMSLICWNCRKEGHRYQDCTAPRKVFCYGCGARNTYKPACLKCQKNKLLNTQAARSRCVQRTQSTNTESEQL
>Gypsy-17_BG_pol#LTR/Gypsy 1384-5213 One frameshift. [Blumeria graminis]
LDYSYRHSCSRPNLYSESDLVISSTFSPNKLNALVLACSIINDNSSIKTCAFIDSGGNGFGFIDTNFVQNTNLKTTPLSL
PRVLRVVDGRTSKAGMITHSVKICLTINNHSEIADLFVTQLGHYPIILGHGWLSHHNPTIDWNSNSVRFNSSLCATICTK
TRAATPVSRTTEAKIEGLDSSNLAPYLAVPPIHERLDIKIIATAPFNDLTAQGSNEIFVLSIHALDQAFSEETENLQAEL
PQWLHHQATAFSKLESQILPPHRSIDHKIVLKDGSHPPFGKLYGMSREELLALREWLNENLSKGFIRASSSPAASPVLFV
KKSDGSLRLCMDYRALNAVTIKNRYPIPLISETLDRLSKAKYFTKLDVISAFNRIRIAKGDEWKTAFRTRYGLFETLVMP
FGLTNAPSTFQNYINNTLQEFLDVFCTAYLDDVLVYSNTREEHRRHVNLVLDKLRTSGLQLDIKKCKFEATEVKYLGLII
SRRGIEMDPIKIECVKSWKQPSCVKDIQAFLGFANFYRRFIRGFSLVARPLTELTKVKIPWVWSPDCDHAFKSLKAAFIK
SPILRHFDPDRRCMVEVDSSDWAHGGILSQFNDEGILHPVAYFSGKLSPAQINYEIYDKELLAIVTAFEHWRPELQGTLE
PVSVISDHKNLEYFMSTKTLNRRQARWSEFLSRFNFVITYRPGRLGGKPDALTRRSEDLPENEEDDRLRQQHQTVLKPHN
LDPKLALSREAALNLAPVSVEIPKYPDNSTENINSMIAKGYHEDKALQNYIKILQGPGPHQSRHLDLSCCSIKGDRLYFD
NLIYVPDNPELKLHLIKHCHDHPSGGHHGRNKVFSLISRDYWWPNMLQLISQYTSNCHICKRVTPSRLKYQGLLKQLPVP
QRRWRDLSVDFIGPLPESDGFDCIMVVGCRLTKARHFIPCRTTIDASGTAKLFYKHIWKHHGFPESVVSDRGPQFVAKFW
HAVCEQTDTKILLSTAWHPETDGQTERFNAILECYLRAYCNYQQDDWVDWLPSAEYNANDTESVTTKVTPFFANSAQHPR
SAITPPRNPNLPSASEYIRTQQKLADEFVKQMDDLNTFLRENMRVSQAFYEKYANQHRSVPPSYQVGDKVFVNAKNMKTK
RPSKKLDWKSLGPFTIVKVVNSHSYQLCLPENLRSVHPVFHTSLLRLDPNNPIPGQVNVPNPPVEIDNFGEALYEVDAIL
GSRRLNYRGFEYQVKYTGQFETSWQPLSDIVTGNISDLLESYHQKYPRRARPTSDEFVDAMAEAKSKDQWNSTLDVT
>Gypsy-47_BG_gag#LTR/Gypsy 149-1402 [Blumeria graminis]
MKVEVPDSISDSSSSITTTSFQSCKDIDENLSNTHPPTMSNSQSQNPDAIMTGNAYEQLLADLSLEDLQKLIHLAKGKAA
EHTTTQPVTPQARRDVTLPKWNGLQEDFGFYIDRLEARIEMDLQPYLLPGQICMDMIDTLPDDKKSRVENWFKQRKAENN
FQWRDLLDHLQKEFQDPQAQQAAHETLQRMEQGEHQYFIDFLKDFEHKMAQSGGNMTYTTTNQTMQLKSSINRRLRRALL
GVKLPSPENYNSWVAEVKEIAAELESFDDYRPKNSSQTKTKIGNPKGGNLFAAPPTSRVDSEGDITMGGTNALLAAIAKL
VDNSSKSLANVGPRSDQKSHQYSSKKPRAKWRAKNDYLKLIHKGVCTRCEGEGHTGRDCTKFRAAQRPGKSVKSVAGVSD
RVVSETLSNDSDSGNEEP
>SushiiDR1_gag#LTR/Gypsy 224-1168 Gypsy-170_DR is 90% identical at DNA level to SushiiDR1.  [Danio]
MDSAGTDQVRTALAQQGALLGQHATQLTTTSRELEMLTAQVVELNARIESLQHEAAGPRQVAPPIATHHHDPEPHANNPP
PYDGDPSSCRAFLSQCGLVFALQPRRYATEASRVAYVLTLLTGRAREWGTAVWDARAPFCRFFDDFKDEMIKLFDRSAQG
DEAAARLARLTQEGRSVTDYSIVFNTLAATCDWNEGALRSRFFEGLNEEIQDEIASHELPRHLETLIDLALRVEGRLRRR
RQWRSVHSSWRADDIFPQQASSTPPSSDPEPMQMGRMHLTPQEKRDRLARGVCLYCGKPGHFAIKCPLKARAHQ
>Stalker4_gag#LTR/Gypsy 1369-2589  Stalker2 proteins are > 90% identical [Drosophila melanogaster]
MEWSEIAIRIDEFRFRFDKSYKCINRDAVIKSETLKNHIETLVGEYNNIVTLVNKYANRLTSEHNNKCLRVIKSLNTRLN
NIRKRRHILIDVPESLSQLVEFNTDQFKELDESVQSSGAESDSDIETLEGSDRIEFKSEPIKISEMAQTLIEFIRLATSL
IPEFDGKPENLQSFLDALGLLDSLKSTHETTAVSLIKTKLKGHVRNLISNEQTIAAIITQLSSAVKGESVEVISAKLLNL
QQRNKTANQYTQEVEKLTKALEGAYISEGLSQSLANKYSTTTAVKAMTQNCSIDKVKLIMQAGTFTNMNDAISKFVNSCT
EITGQSNTVLYYRRGANNYNRGARGYNRGRNINHNNYNRGSNNNNNNNYNNRGGRRGQNQGRGRGNYNHGNNNNSSVRIA
QNTSEN
>SushiiDR1_pol#LTR/Gypsy 1033-4476 via tfasty with Sushi, 4 frameshifts. This is actually the Gypsy-170_DR full ORF translation. Gypsy-170_DR is 90% identical at DNA level to SushiiDR1 and should have been called SushiiDR1b or so.  [Danio]
AHANGSYAPYTSRKEGPSCPWSMPLLRKTRAFCRQVSFKSQGPSVNRGILVGAFPCLDSPRSRTLLPITIQYEGSTNSAS
ALLDSGAEGNFLDRAIAKQWGIPAVPLPSPISVWSLAGQLLSTITHITPCVSLVVSGNHREAIELYLFDSPGSPVVLGHP
WLAQHNPHVDWSGDSVLAWSQSCHVSCLGSALSPGSLCSVLQEETADLTKVPVEYHGLRQVFSRSRAGSLPPHRPYDCAI
DLLPGTSPPKGRLYSLSGPEREAMDRYIQESLNAGLIRPSSSPAGAGFFFVKKRDGSLRPCIDYRGLNDITIKNRYPLPL
MSSAFELLQGAQVFTKLDLRNAYHLVRIREGDEWKTAFNTPTGHFEYLVLPFGLTNAPAVFQALVNDVLRDMVNKFVFVY
LDDILIFSSSLQEHTQHVRQVLQRLLENQLFVKAEKCEFHARSVAFLGYVISAEGIRADPDKVRAVAKWPVPNTRKALQR
FLGFANFYRRFIRNFSQIAAPLTALTSTKVLFKWNTQAQEAFGALKSRFTSAPVLSIPDPEQQFIVEVDASEVGVGAVLS
QRSSKDGKVHPCAFFSHRLSPAERNYDIGNRELLAVRLALGEWRHWLEGAAHPFLVWTDHKNLEYVRSAKRLSARQARWA
LFFGRFNFVLSYRPGSKNIKPDALSRLFETPSGETPVESILPEGVVVGSLSWGIEQRVIKAGQGIEVPEGCPEGRLFVPV
ALRSEVLRWGHESRLVCHPGIWRSLAAIRQRFWWPSLGSDVRQFVLACSTCAQNKTSNKAPVGLLRPLPIPSRPWSHLAL
DFVSGLPPSRGNTVIMTVVDRFSKAAHFIPLPKLPSAKETAQAMVDHVFRIHGLPVDVVSDRGPQFVSRFWKEFCRQIGA
STSLSSGFHPQTNGQCERANQDLERALRCLTSQNPSSWSQQLSWVEYAHNSLPVTSTGMSPFLCSMGYQPPLFPSQEPDA
AVPSALAFVRRCRRTWMRAEEVLARTSRRIKAAADRHRTSPPQYVCGQKVWLSTKDLPLRVASRKLAPRFIGPYCITKVL
SPVAVKLKLPPTLGRVHPVFHVSRVKPVFRSNLNPIISSPAPPPPRLVDGSPAYTVRRLLDVRRRGRGFQYLVDWEGYGP
EERSWIPARHVLDRALVVDLHRRLGKPLP
>SZ-59#LTR/Gypsy 70-4841  [Oryza sativa]
MEKQNLDFGKLLGDIQESLVALNNKQAEMQVAVAKLDEGVSGWRPQVEAAIKDLRAEVDELRQQHDAASKEKQAPSAALS
PRVPLTGEERKVPLLPTPPPSSHFGAAEGGSKLADGHGVPLHHRRRASRVVTTLIPTPGKGTFNVSPVPLHSCENFGSGF
GEMDGEVEERHYSHRVPKLDFPKFDGTDPQDWRMKCEHYFDVNNTYPGLWVRVAIIYFSGRAASWLRSTKAHVRFPNWED
FCAALSDKFDRDQHELLIRQMDGIRQSGTVWEYYEQFDELMNKLLVYDPVVNMHYLTHRFTEGLYRKIRNVVLLQRPRDL
ESALAVALLQEEVLETADEVTGKEVKKSEGNSLGRSVANLRGAYPLPTPPMRSGGINMGIKSEEKKESEVRRSSGTNERL
SSLKAQRRAQGLCYICAEKWSPTHKCSNTVQLHAVQELFTVLHESVEDGLSTTDHVVEQTLMAVSLQAVQGTETGGCMRM
LGQIQGKEILILVDSGSSASFISKRVASSLMGVLEQPVHVQVMVAGGAKLHCCSEILNCEWTIQGHVFFTNLKVLELNNY
DMILGMDWLMQHSPMTVDWTTKSLIIAYAGTQIQLYGVRSDTEQCAHISSKQLRELNDRTAVSNLVQFCSVFALEYQEQI
PEVVQTVLTEFSSVFDEPKGLPPIRQFDHTIPLLPGAGPVNVRPYRYTPIQKNEIESQVQEMLSKGIIQPSSSPFSSPVL
LVKKKDGSWRFCVDYRHLNAITVKNKYPLPVIDELLDELAGAQWFSKLDLRSGYHQIRMHPDDEHKTAFQTHHGHFEFRV
LPFGLTSAPATFQGVMNSVLATLLRRCVLVFVDDILIYSKSLEEHVQHLKTVFQILLKHQLKVKRTKCSFAQQELAYLGH
IIQPNGVSTDPEKIQVIQHWPAPTSVKELRSFLGLSGYYRKFVRNYGILSKPLTNLLRKGQLYIWTAETEDAFQALKQAL
ITALVLAMPDFQTPFVVETDASDKGIGAVLMQNNHPLAFLSRALGLRHPGLSTYEKESLAIMLAVDHWRPYLQHDEFFIR
TDHRSLAFLTEQRLTTPWQHKALTKLLGLRYKIIFKKGIDNSAADALSRYPGSDRVELSALSVAVPEWINDIVAGYSSDP
DACSKVQTLCINSGAVPNFSLRNGVLYFQNRLWVGHNVDVQQRILANLHTAAVGGHSGIQVTYQRVKQLFAWPRLRATVV
QYVQACSVCQQAKSEHVKYPGMLQPLPVPDHAWQIVSLDFVEGLPKSASFNCILVVVDKFSKYSHFVPLTHPFSALDVAE
AYMQHIHRLHGLPQSLISDRDRIFTSTLWTTLFRLAGTQLRMSSSYHPQTDGQTERVNQCLETFLRCFVHACPSQWSRWL
ALAEYWYNTSFHSALGTTPFEVLYGHKPRYFGLSASAACRSDDLVEWLHEREKMQALIRDHLLRAQTRMKQQADQHRSER
SFAVGDWVYLKLQPFVQQSVVTRANRKLSFRFYGPFQVLDKVGTVAYRLDLPSSSLIHPVVHVSQLKKALAPTEQVHSPL
PVLDPTNATHVCPAQILDRRFIRKGSKLVEQIQVRWTGDAPAATTWENPQELRRRFPTAPAWGQAGTQGGG
>SZ-54#LTR/Gypsy 180-4420 (1 stopcodon) [Oryza sativa]
MGDNGDLKAAIDALTKNVAAMQSSIQANAKAIENITASSSGSGPRHHSGEQPPDRPPKHWRPEMPRYDGKTDPLTFINKC
ESFFLQQRIMPEERVWMASYNLHDDAQLWFMQIQEDEGTPTWPCFKDLINLRFGPPLRSTPLFELSACRRTGTVAEYSSQ
WQALLPRAGKLEEAQKIQLYTGGLLPPLSLQVQMQNPQSVASAMSLARQFKLMAEYTTAPAKAPGRGVLGAPQARPALPA
PPPHPDKTPAVTNQGEGRQAKRLTKEEQAERRRLGLCYNCNESYTRGHNRVCRRIFHIAGVELDDDAAADAHEEPTTESP
VFSLHAVAGVPRGGTLQIAVTIGGAPLVALLDSGSTHNFISASAAPRTRLPVESRPRLTAVVANGERVACPGVIRAAPVV
IDGTNFDIDLFVMPLAGYDLVLGTQWMATLGEIVWDFATPSMAFHLHGHAFRWTGVTSAAAPSLLSTVASASLLDELLAS
FADVFAEPVGLPPPRGRDHGIVLKPDAAPVAVRPYRYPAAHKDELERQCAAMIHQGIVRRSDSAFSSPVLLVKKADGTWR
FCVDYRALNALTVKDAFPIPVVDELLDELHGARFFTKLDLRSGYHQVRMRPEDIHKTAFRTHDGLYEFLVMPFGLCNAPA
TFQALMNDVLRDHLRRFVLVFFDDILIYSNTWADHLRHLRVVLTILRQHRLFVKKTKCSFGVNSVGYLGHTISASGVALD
PAKVQAIHEWPQPRSARAVRGFLGLAGYYRKFVHNFGSIAAPLTALLKKDGFTWTADAAAAFLALKEAVTTAPVLALPDF
AKPFIVECDASTYGFGAVLIQDGHPIAFFSRPVAPRHRSLAAYERELIGLVLAVRHWRPYLWGRRFYVKTDHYSLKYLLD
QRLATIPQHHWVGKLLGFDFTVEYKSGATNTVADALSRRDTEEASLSTIMAVSGPRFDFIDRLRQAQARDPALVAIHDEI
VAGTRAAPWAITDGLITYDGRLYIPPTSPLLPEIVAAVHDDGHEGVQRTLHRLHRDFHFPNMRRCVQDFVRECITCQRYK
TEHLHPAGLLLPLPVPTVVWADIGLDFVEALPRVNGKSVILSVVDRFSKYCHFIPLAHPYTAETVAxAFFNDIVRLHGMP
QSMVSDRDPVFTSLFWRELMRLMGAKLHMTSAFHPQADGQTESANRVIVMYLRCFTGDRPRQWLRWLPWAEYVYNTAYQT
SLRETPFRVVYGRDPPTLRSYEPGETRVAAVARDMEEREAFLADVRYRLEQAQLVHKRHYDRQHRHVSYQVGDWALLRLR
QRTMSSLPQATSGKLKPRFIGPYLVTELINDVAVRLALPPQARIHDVFHISVLKKFVGVPPAALPELPPIHHGVVTPEPA
RVERAHLARGVRQLLVHWRGEPAESATWEDLDAFREQYPQFQLEDELIREEGR
>RLG_scTat_1_4_gag#LTR/Gypsy 374-3214  [Saccharum hybrid cultivar]
MSLAEGRVPTRNPAAPPSGETPLSVASISPRAVTSPSPFPFGLDSVARVYASSVSTRMSAYEELPGHHLRSTLDLVASTP
ASDYRDSTETPETEPRVTASPRHHLGDGWHRPHIPPSYYYFGAPDSDSADDTYDPTRECFNIDVESTLELEDEEPVEERH
TPPHVELPVERNEPQFLAGQGAQLGQIRELQDQLDEERENLDLLQQTLERERAEHAFGGRARERARDVNRRIDEDQAVDP
PVFARASQNVVAAAMLLRNMPEPSNPDACRARDKIRGLLETAAMQQAESSASRRREAASERTLEPSRQEREASVHPEPAR
RNWVAPAPEPIANDREPRDTRGNIVERRTRKHGDGVARGYHVHRGGRYDSSEDRSPSPEPPGPRVFSRAIRETVPPARFH
PPTTLTKYNGETKPELWLADFRLACQLGGATDDGAIIRQLPLFLSDTARAWLEDLPPWQIHDWDDLVRVFEGNFKGTYMR
PGNSWDLRSCKQKPDESLRDYIRRFSRQRTELPNITDSDVITAFLSGTTCKELVRELGRNTPLTANGLMDIVTNFASGEE
AVGAIFGGEPARVEQKVDDPVSSTRGPKRNNRRKKKGQQGKLEAPADMLVAATEHKKPRGPPGGGVFDKMLKEPCPYHKG
LTNHNLEDCHMLRRYFGGAGAKKDDKGEDPKGDDKDGEFPEIRDCYMIYGGPSTCLSARQRKRERREVFSVQSAVPRFLD
WSAVAITFDRDDHPDYVPNSGVYPLVVDPVIANTRLTKVLMDGGSSLNIIYSQTLDLLGVDRARLQPSVGGFHGVVPGKR
AEPLGRVDLPVCFGTPANFQKETLTFEVVGFHGTYHAILGRPCYAKFMAIPNYTYLKLKMPGPNGVITVGPSFEHAYECD
VECVEHDKAVFGSAILAADLDGLANAIPDPKRHAGSFEPAEDVKLVPLDPADPKGRALNVSATLDPK
>RIRE3A_gag#LTR/Gypsy 554-1975 (RIRE3A has no pol) [Oryza sativa]
MADNEKGNKVRSQDIGTSSSRVNEAPDTSCVAVVQHLINQNQLLIEILQQHRMPILNPSQMQPQVQLEAVQALTPQVSAP
PTSLKAPHAMPHVDPKEASIICFMCDEQGHYARNCPQQKRKAPMRTEDEVRKMIITSTEWPPPGMTKHQRRNSSRGAQQL
TEHLLANGGRVSGSEDSDQVSSDDEDAKSPQGFNQNKIELKACSRCGEIGHVASSCASACVHCEEGHPPDRCPTSRITCF
FCEGTDHVPKDCQFSFLLTKKMANQPASSNGEKHQGNTNPRQDHPFSLTPVPGQRNRNEKRKCRVREDICCFNCQGMGHF
ADKCPKPRNIAAGTSVHATPCNQKLAPQRIVIHASRSSPIARVATTPIPMSALPQGVNAQFQPQPPADKTEASICVVPLE
VPIQQLRNQVQDEEPECKKVIVCYNCSEEGHYSKNCPQPRQKSTSTLPPIYTKQTFQSYCGHWSKRRTRKASC
>RETRO1_gag#LTR/Gypsy 1-2427 [Oryza sativa]
MAEQGKTHDLSPSVSGDDGEPNPRRRARTPPPPPRQSPKQGEALERVDKSAASPAAGDAGERRDGERRLLVYGDGSTPQG
ALQAAGALLRHPPVVHDPESPAQRWLEDVANLVMTAQQRLGAGGRSATTKTSGAATTGSVSSRRRARRAAAAARHSAATP
SSTPSTRKDQHGEPDARLNIERRRNSRRTPRATEGASSSRVSPRHGREDQPSVPPAGGVGCRAFVASLRNVRWPPRFRPT
ITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVHSWEDLCQQFTMNFQGTYPRPGEE
ADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVIYAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTW
NSSGSGVAASAAPGSAAQTGRRDRRRKKRSDRSGDEGHVLAVEGAPRATRKGRPASDKKKEAGTPSKERPAGRWCSVHNT
SLHDLADCRAVKNLAERTRKWEEDRRQERREGKSPAVPSGKRRSEAKQKAPAVDNDDGDDDLGFQEPGATIATVDGGACA
HVSRRSFKAMKRELLTMAPTHEAMRRARWSEVALTFDQTDHPPCIARGGQVAMVVSPTICNVKLGRVLIDGGAALNILSP
AAFDAIKAPGMVLQPSQPIIGVTPGHTWPLGHIDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHYA
YLQMKMPGPGGPISVHGDLKVALACMEQRADRLAAASKPEGGDERLGPSAPTAPRQRMATCDEVPVKEVALGDGPSKTTR
IGGLLDGK
>RIRE8A_gagpol#LTR/Gypsy 1607-5530 (1 stopcodon) RIRE8B 89% similar, plus it has 4 stopcodons so many differences probably sequence errors or inactivating substitutions. [Oryza sativa]
MVNTRTGTGSGSGAHNNEENPTLAQILAQQTQLINLLVQQAQNQQANNQDQNPPPPPQNKLADFLRVRPPTFSSTTNPVE
AGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAGGEPITWQEFTAAFKKTHIPSGVVALKKREFRAL
NQGSRSVTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKKRRAA
QFKAQQGSNQRPRLVTGPQAPSYPQGGSSSVVRPQRQFYNNNTGNRGNDNRNMVARPVATSAQNQPVRKEQGSKPVICFN
CGDPGHYADKCPKPRRVKNVPAPNNSNVPAPKARVNHVAAAEAQSAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFAS
KHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVLFPSSLILLESKDLDVILGMDWLSHHRGVIDCANRKVTLTNS
NGETVSFFASSLKSHGVVLNQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKK
QVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYxALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQL
RIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLALEKLR
EHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSFLGLAGYYRRFIENFSKIARPMTRLL
QKEVKYKWTEGCEQSFQELKKRLVTAPVLILPDSRKGFQVYCDASRLGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLE
LAAVVHALKIWRHYLFGNHTEMYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMEIHYHPGKANVVADALSRKSYCNMSE
GRHLPWELCQEFEKLNLDIVSKGFVATLEAQPTLFDQVREAQVNDPDIQEIKKNMRRGKAIGYVEDEQGTVWLGERICVP
DNKELKDTIMKEAHETLYSIHPGSTKMYQDLKQQFWWASMRREIAEYVALCDVCPRVKAEHQKPAGLLQPLKIPEWKWEE
IGMDFITGLPRTSAGHDSIWVVVDRLTKVAHFIPVKTTYTGNKLAELYMARVVCLHGVPKKIVSDRGSQFTSKFWQKLQV
EMGTRLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW
DQTGERQVFGTDILRDQSRHKSYADNR
>RLG_scReina_1_1#LTR/Gypsy 144-4396  [Saccharum hybrid cultivar]
MGDNDDLRAAIDALTKNVALMQASIQANAKAIADLTTSSSSASGPRPHSGEHTQDRPPKHWRPEFPRYDGKTDPLIFINK
CESFFLQQRIMPEERVWMASYNLNDVAQLWYMQVQEDEGTPTWARFKDLLNLRFGPPLRSAPLFELSACRRTGTVTEYQD
QWQALLPRAGRLDEAQRIQLFTGGLQPPLSLQVQMQNPQSLASAMSLARQFELMAEYTTAPAPAAPDRAPARGLLGAPPP
RLALPAPPPQAERVPVAANPADGRQAKRLSKEEQAERRQLGLCYNCNEPYSRGHNRVCRRIFHIAGIELDDDDSTAAEEP
AAESPVFSLHAVVGVPRGGTLQVIVTLGGASLVALIDSGSTHSFISAGAAERTGLLVEPRPRLTAVVANGERISCPGVIR
AAPISIDGTNFNIDLFVMPLAGFDVVLGTQWLATLGPIVWDFAAPSMAFQLQGRRICWSGMASASAPRLYSTVASAPLLD
ELLATFEDVFVEPTGLPPPRGHDHAITLKPDTAPVAVRLYRYPAAHKDELERQCAAMIQQGIVRRSDSAFSSPVLLVKKA
DGSWRFCVDYRALNALTVKDAFPIPVVDELLDELQGARFFTKLDLRSGYHQVRMRPEDVHKTAFRTHDGLYEFLVMPFGL
CNAPATFQALMNDVLRAHLRRFVLVFFDDILIYNKTWADHLRHLRAVLTILHQHHLFVKRSKCPFGVDSVGYLGHIISAA
GVAMDPAKVQAISDWPRPRSARAVRGFLGLVGYYRKFVHNYGTIAAPLTALLKKDGFLWTPDAEAFFAALKGAVTSALVL
ALPDFAKPFVVECDASTYGFGAVLIQDAHPIAFFSRPVAPRHRALAAYERELIGLVLAVRHWRPYLWGRRFTVKTDHYSL
KYLLDQRLATMPQHHWVGKLLGFDFSVEYKSGASNTVADALSRRDTEEESTGTLLAVSGPRFDFIGRLRHAQATDPALVA
IHDDIRAGTRAAPWAIADGLVVYDGRLYIPPSSRLLQEIVAAIHDDGHEGVQRTLHRLRRDFHFPHMRRCVQDFVRDCAT
CQRYKSEHLQPVGLLLPLPVPSTVWADIGMDFVEALPWVNGKSVILSVVDRFSKYCHFIPLAHPYTAETVAQAFFSDIVR
LHGMPQSVVSDRDPIFTSLFWRELMRLVGTKLHMTSAFHPQSDGQTEAANRVIVMYLRCFTGDRPRQWLRWLPWAEYVYN
TAYQSSLRETPFRVVYGRDPPTIRSYEPGETRVAAVARDMEERDAFLADVRYRLEQAQQVQKHYYDRHHRPVAYQVGDWA
WLRLRQRTMSSLHQAPTGKLKPRYIGPYRVVELLNDVAVRLQLPPQARIHDVFHISVLKKFSGEPPSAPPPLPPIHHGVV
TPAPARVERARTARGVRQLLVHWQGEPPESATWEDLDTFRARFPDFQLEDELLLEEGR
>RLG_scDEL_1_6_gagpol#LTR/Gypsy 2051-6449  [Saccharum hybrid cultivar]
MSYNLRRGRGNEEEEQPPPPPPPTPAELMQTVVEGQRMLADAMRQLANREARPGRQGPEPNQYSDFKDFLDTKPPLFKEA
EEPLQADEWLNTIEQKFRLLRLTNELKTEYASHQLHGPAGIWWSHYRSTLPANIPIAWDQFKAAFRGNYIPPGLMTIKHT
EFMRLSQGNKSLTEYLQSFNNLARYATEFVDTDAKKIASFKRGLGPKLMKTMGTSKCTTFNDFISDALTQENNNTIYSAS
KSRKRALEASASQSRASATPRSSPRPPATNAKFRPPQKKVPMKTGFRKAYTVALPKSNAGQGSSSVPPSNMPCWNCNKPG
HWSRNCPYPKKNVNQGGRQGHAHYNSIEEIPSGEVVTAGKFLVDQHPAVVLFDSGASHSFISPKFASKFAHKLHTVEGVG
YCISAASGNISTNKVVGNLEFEIEGRSYSLALLVLPGLDIDVILGMNWMSQNGVLIDTSARVVMLRDPRDQKGFLVQLPR
KVELSGEIHAVQAKALAEISVVNEFPDVFPDDLPGLPPDRDVEFKIELLPGTAPISRRPYRMPPNELAELKVQLNELLKK
GLICPSSSPWGCPAIFVKKKDQSLRMCVDYRPLNAVTVKNKYPLPRIDILFDQLSKAKVFSKIDLRSGYHQIKIRPEDVP
KTAFSTRYGLYEYLVMSFGLTNAPAHFMYLMNSVFMPELDKFVVVFIDDILVYSVNEEDHAEHLRIVLTRLREHQLYAKF
SKCEFWLREVPFLGHVLSDGGIMVDPAKVQEVLNWKAPISVHEVRSFLGLAGYYHRFIPDFSKIAKPMTRLLQKDTRFVW
TPECDAAFHQLRTLLTSAPVLAQPDIEKPFDVYCDASGIGLGGVLMQEGRVIAYTSRQLRKHEVNYPTHDLELAAVVHAL
KVWRHYLLGNVCNIYTDHKSLKYIFTQPELNMRQRRWLELIKDYNLQVHYHPGKANVVADALSRKSHCHSLVETDFHRSR
LLHPSVLYNITVSCTLKSRIIELQKTDTGIFHIKRKMKEQETTQFTIDEEGVLWFKDRLVVPKDRELRNDIMSEAHSSKL
SIHPGSNKMYYDLKPLYWWTKMRKEIAAYVARCDTCCRVKAVHMKAGLLQPLSIPGWKWEEISMDFIVGLPPTVKNHNSI
WVIVDRLTKSAHFIPVRVDYRPTDYAELYFNQIVRLHGIPRTIISDRGPQFTARFWEHLHHLLGTKLVRSSAYHPQTSGQ
TEQVNQILEDLLRACVISSKGSWEKWLPLAEFSYNNSYQESIKMAPFEALYGRRCRTPLNWIESGERRFYGIAFVEEAEE
QVRTIQKHMAAAQARQKSYADRRRKPLEFEVGDFVYLKVSPMKSVQRFGVKRKLAPRYVGPFQIIGKSGAVAYKIQLPPE
MSAIFNVFHVSQLKKCLRVPEEQVPLGDIRLESDLTYEEKPVRVIDTQERVTRSKVVKWYKVMWSNQGSESDATWEREDY
LRDGYKEFYEKWYAFQISGRDFYKGGG
>SZ-64_pol#LTR/Gypsy 1514-4738 via tfasty with ATGP3_pol, 3 stopcodons. (SZ-60 similar but with too many stopcodons) [Oryza sativa]
LCPISPSLVQVANGDFLSCQYVVPNFTWWIQGQTFSYDLKVVQLGGHDAILGMDWLAQWGDMSCNWATKTLKFFYQDQWI
ALQGVQESDSQTELCAISYPQILKWQKGCDIWDAVLLEPTDNADSQSISEVVAPLLSEFADVFQEPKCLPPHRTFDYAIS
LYPDAAPVNSKPYRYSPLQKDEIERQVKDMIDSGLITPSMSPFASPVLLVKKKDGTWRFCVDYRKLNSVTVKSKFPMPVV
DELLDELAGTQYFSKLDLRAGYHQIRMVEQDEFKTAFKTHHGQFQFSVMPFGLINAPSTFQCLMNSVFASLICKCVLVFM
DDILVYNPNLDSHLHHLRQVFMLLRQNQLYAKMSKCSFACAQLEYLGHIISAKGVSTDPAKTAAMLAWPVPQTATELRGF
LGLTGYYRKFVPNYSIIAKPLTVLLKKKAFLWSDAAQQAFQQLKLAMSSTPVLALPNFSLPFVLETDACAYGVSAVLSQL
NHPIAYYSKALGPANQKFSIYEKEFLAIMMAVDKWRCYLxRCPFTIRTDHKSLCHLNDQVLGTDLQxKAMTKLMGFQYTF
QYKKGVDNIVADALSRMPVIPHCAALSVASPLWLQEVLNSYSVDPAAQTLLTELAVQSTNTQGFSLHDRLIRHHGRVWIG
ANIGLQTKLITAFHSSPVGGHSGTTATYQRMKKLFSWVGLKSDVANFVKQCQICQQAKSEHCKLPGLLTPLPIPKEAWVD
ISMDFIEGLPKSDGFTVILVVVDRFTKFAHFIPLRHPFTASQVANAVDKTVFKTHGIPHSISDRDKIFTSRFWSDLFKVW
DTTLSMSFAYHPQTDGxTERVNQCLEMYLRCMTQATPTKWNKWLHLAEYWYNTSFHTALGCSPHKALFGADPHVSQVLVL
LSSVHQSVVDLVSERNQLSAFLQQQLQRAQLRMKHQADKGRSERSFAVGDHVFLKLQPYTQSSVVNRPYPKLAFKFFGPF
EILEKIGQSAYRLQLPDSSLIHPVFHVSQLKAHVPDHTPVFTSLPHPVVLDAADVWPEEILDRRLVKKGNATHVQVLIKW
SSLPAHQATWEDYEVLKTRFPSAPAWGQAVSPAGG
>Tor4a_gag#LTR/Gypsy gi|49035809|gb|AAT48674.1| gag protein [Oikopleura dioica]
MVITGLNQHSKVNKMPEEILFQPFPSLNPRQLFRPMMPTYEFEVSSENLKDKISSMKKIFEKSISDHGRDSDETELLQKF
ERQAIECVKNNCTSEFMNDYGREMAGFETEKDAFNFLESIFGSESEDDKRERAMEDLENLTRRSEKNEKFAMFLKRIQSI
AAVISEKTDARKFIVDQHFAKNLEPCNKAFLRDHGYSKKTTDEIVAFLDSRDRFLSTNISAIQSTDFAAYFADKTSELLD
NKFAKMEANYDQKSTELTETIKTLTATVARLEAENKKTKTAENASKQERQNFQNSQPASLPQFQNFSRNQQGFQPQNQFP
PRVPFCINCGTQGHYKAICPKIQCYECKNFGHIGRNCSRRQNGGPVTSTQQWPQAQAQFTAPKNQ
>Tor3-4_env#LTR/Gypsy gi|49035826|gb|AAT48685.1| envelope protein [Oikopleura dioica]
MDRDTNSAWWYSDAGIGVEQEESLYFIDSSVEVIFYRHYSSPCLLDINTIAKEAVCSSTSAQKDVGANILKIAEACDREW
NSELNILSQYASHNFQNSVYYSHPQPLSSSRAPRAISLVAVSAFVSIFTSLITSGLGLYSAFATHNSNAIKESLTDYIKF
QHGEKMMVALGLENNREATSVFLEYACEKDLYDSNFKVTNAASKVLKSYTDAVVQESLSLSFGTWPRNMEFLESLLKLCT
ETGANTKHFCLDAIYSSQVNFRFLGSVSENGTLSHRLLINMPIQATSLRRNSFYKLINLGFWASENFMRFDLPASVIKSD
NLYFEITKESCLKNFCNIDLISIGKHSSCLSSLFEENTTEDCNVVIVKEPESCDIRRLSNSTIIQAREATVLLDSDEGPL
TIPLNKGNLMVSLPGKLLCYSRNDSETFLLPKPMVSHYSSLLPGQIEVSHAINTSKLLELEAKLSEGLKIEKRLRSLEFS
DDRLEVNGAEYPTLWVIIIASFSVLGVQLMLCFLRSVQVMPALKFLARFTKGLRKETGAPAQASLEENIESPCLVAVVDQ
NVSGEISAELFHKETSA
>Tor4b_pol#LTR/Gypsy gi|49035820|gb|AAT48681.1| pol protein [Oikopleura dioica]
CRIGDIVLKNCLFFIVENNCSAILGTKEMEENSISVDIGVRKIRQRNVSEALLTDGTTVKNSIKIVQKTAFFSSNAKTSE
NITINPKSCVNISLIPENQPTSTIYAIPEIIIKNKNIEIYPQCVKISRFQQLVTIKIGNNSVLPIFIPKNTNFCRFVEVD
LCAPETGKFKEVMQELQIGEAPAKIKEELKNIIMRNIEVFAVENEKLGTTDAMAYSIDTGSAAPVASQRYKTPYYLRQEM
KKIIDDNLKSGLLEPISSPWAAPVLLVRKASGKWRLVCDYRKLNAVTISNQYPLPDIDGLIDTMAASKIFSTADLFTGFH
QIPCDEEAKKKVAITTEFGQYTWTAMPMGGKNAPAVFQQMMDKIFADIPKSRLAIYLDDICMHSQTFEENLRIIENVLKT
LKENNLKIRAAKTEFLMKKVKFCGAVIENGKRSPNPVKTQAVRYLAEPTSKKKAASIFGLFNYFRNFIPQFATKAAPIAE
AMGKTFKWGEKAKMAFNQLKNEISEYVDSLRIPNPNEGKFAIETDASEDGIGAALLYKQSPGSDFEPVAFYSMRFDTAQK
NYNISEKELLAGRKAMNKWAHYLLGRSFIWFTDNSCVKWAHRIKSQKAKISKWLAEIGDFDFKTILKPSKTMGISDCLSR
NFGGNIPIKMIQASEMAALQELDPDLREIANFAKIDRWPNFPDPEISKFLKWREKNAFGKNNEIGVNFPHFRAIPPKAII
NDILQEYHDNSGHPGISQTLQDIEKKYFHPEMRKIVQEHIRTCLPCQVSKPNNNPIKAPLGRVDPPGQPFERFAIDLVGP
LPMTDDYNRHICVSTDLFSKRVYAQPLTEKSAQQVLKAAQLDWFRNPHLPKSVLMDNGSEFSALKDFCNTAGISVKLSPA
YHPQTNGEVENRNRTVKSRLRLLRNMENWDLHLPRIIHQINSAPHSVTKYSPFQVETGFSGENLGDPYKSEQVKKECDFS
LIRERILDNHKSRQNDEEAHHDFKEGDLVLVKTTKIFEKGEKYKGPFKILKIRNQNLSFLLLNLESGHETTRHLSQIKRF
FERENQPESPERVQTDQTPKKPNKKRRKRYIAGFLSHQKENEEPRDNLSIPPETHTSDEILEGNSDEFLTPNLTENSSTS
DLSSSSEDQPENETVIRPANRTRKLDFSSSSEEEEMARITANSDDTAISTRKPRKSVSPVFHRICDLNDHALNNVIEKCE
IPIKIPLLKTQSKKQYKIEQVNQWIRRNKPSWEKDDEGFYLAKFESLKIDKRTYLHMLKITEITVFAKQLGIQVQFHDRP
KQEIENEICSIVKRRFPQFKFTQNGKMIIDPENFE
>XP_002933672#LTR/Gypsy gi|301608169|ref|XP_002933672.1| PREDICTED: hypothetical protein LOC100488716 [Xenopus (Silurana) tropicalis]
MSMRAQRVHAWAFDADKPVRSQMHDLIHLVRKWLQPEESTPSQMVEIVVLDRFLRALPVRLQRFAGQADPADANQMVALV
ERFLSTEGLLQGPLAKSAGPKSQRAPVTGKVAPATKGWKDTPKGRPDVVRPERWQNPKTDWQVKDKGQVICFRCQEPGHM
AASCPIIQEPMDCSAAQPHLSLFAKTVCLAHPGLELERQMCTVKVEGHEVSALLDSGSLVTLVHASLVDARKLQSYQMGV
ICIHGDVKSYPTAILSFETASGICIREVAVVKNLLHNVILGRDFPVFWDLWGKVKGLAGEDVPSFSIPPICPKQEPEEEE
VASVAILTECPEPLESCSPIEAVGVTQDEKGNFPLEVLAGDTEFPSESSEPPAMPDLEVSRDNFGTSQMRDPTLSKAWEN
VKVINGEPQEPGVESIFPHFSVNRDLLYRVDRVQGVRVEQLIVPQPYRRMVLDLAHAHALGGHLAQEKTQQRILQRFYWP
GIFSEVKRYCDSCPECQLSTPRPHFRSPLVPLPIIEVPFERVAMDLVGPLLKSARGHQYILIVMDYATWYPEAVPLRNTA
SKNIAKELFNMFTRTGIPREILTDQGTPFMSRVMKELCKLLKIKQLRTSVYHPQTDGLVERFNKTLKNMLKKVVDKDGRD
WDCLLPYLMFAVREVPQSSTGFSPFELLYGRHPRGLLDVAKETWEQEATPHRSVIEHISLMQDRIAAIMPLVREHMQQAQ
EAQSRVYNRSAKVRTFNPGDRVLVLVPTVESKFLAKWQGPYEVVEKVGEVNYKVHQPDKRKKEQIYHVNLIKPWKDREVL
SAVVQPLPHDQDGFQKVKIAETLSVAQKQDVREFLQRNTDLFSDLPGCTNVIKHDVITDPQVRVRLKPYRIPEARRQAVT
EEVQRMLDLGVIEKSKSEWSSPIVLVPKPDGSLRFCNDFRKVNEVSKFDAYPMPRVDELIERLGPARYITTLDLTRGYWQ
VPLTESAKEKTAFSTPQGLFQYVRMPFGLQGAPATFQRMMDHILSPHQLYASAYLDDVVIFSRDWQSHLPRVQAVLNSIR
DAGLTANPKKCAIGLEEARYLGYTIGRGVIKPQVNKVEAIRNWPQPVNKKQVRTFLGMVGYYRRFIPNFATMAAPLTDLT
KGKESTMVKWGAETEKAFQELKTALCQQPVLVAPDFTKQFMVQTDASGVGVGAVLSQLVRGEEHPVVYLSRKLNPAEKNY
SIVERECLAIKWALEALRYYLLGRQFVLITDHSPLTWMSQAKEKNARVTRWFLSLQNFNFKVEHRAGRLQGNADALSRSY
CMVVGSVRTHRLEQRGEVCDKKVCLRENCLLDGRKADIRLVLKPGVGFPPAQFQSGELCLGNRAGLFQIDSGDQPIPKS
>TV1_env#LTR/Gypsy 4424-5828 via tfasty with IDEFIX, 5 frameshifts. [Drosophila virilis]
HITKPNSKRKRRLIKANITITGQQQTAIKTYKHQLKLIIIILLSITVNYINAQSIEINPIKAHNGYLIFKTGTIDIPTDY
EFHCLTVNITKTEETFNNLIEQSKEFNNLIQIEYLVEKLNREINGLKIAKRNKRGLVNIVGTAYKYLFGTLDQEDKAEIE
QKISNLAENSVQVNELNYIIEAINKGIGIMNELDQEKQKGKKLDILIFNLQHFTEYIEDIEMGMQLTRLGIFNPKLLKHD
YLLHVNSEKLLNTKTSTWFKSDTNEILIISHIPREIIKSPVFEIIPYPDENNNILTEIAHEKYFTQDKKVYSRETKKLIN
NKCLTGILNQITSECSYTKILQNFQINYIEPNIILTWNLPKTILNHNCINNEITIEGNNIIKIFNCSLQINEISISNNML
DYTQSIYVGNDVIKLEPLSFVQTKQIINAHTKFTNVFQIITITIFVIILISLTLYVTYKFKSIPKKLII
>Tor3-2_env#LTR/Gypsy gi|49035831|gb|AAT48688.1| envelope protein; clearly different sequence with same name; grrr) [Oikopleura dioica]
MGLPKTTISLEGLTDIEVEANTSDGKEDRKTISILLDMDEIKAKIQQKATEIGYSMKLTTKMITLKFIFEDSETEPNREC
QNFFLTKILAITSKEKANQPAQVQTRIEGRRRRQNVLRHNQHKTRRKQKIRKNIVTTKPTTTTTQSPTTQNPETETIQWE
ELFPTATAVFARETTIQPETTKTMLSLEKRLELETLNRQRRNVLNLVNLGSNVLNWRHTNNLFEREQKAAKLQSNLSREL
EKHVKHIEINSQKGLERLQSEMDIICDSNTRLTANAIITRYSSELNRIGLLLLETQTDTGRNSIIHEQAETVCKNKNPKY
TETCKILCSSPEFYKHIGFKAEYNNDLTLSIKSYFSTEIPVLTTLGTPHFVRSVPVPLLQENDIFFYEVSETPQLIGIND
PAAVSLDKCTTRGTLCLCKHTDLTNTRLNGCARNLIQGSNANCETTIYSTTLPCLVNYDPSLTLVGSFTTPRVTVDKMDS
FMGTNVPKLKNSNDTVVAYLPMEKSYTIACGTNILQMPPKEVNVTEKTFYVEKTSTLDVEKSYIAENFAISQKLKNMAKS
SKETQYFNSSRLTKLQSELDKTLAQTTSNLWNDLGYQYKLALICTATIATLILTTCIIVKIRRGIKNLRTCCWITRTRYE
DPTPAPRPSLNF
>TCN2_gagpol#LTR/Gypsy 64-5022 [Cryptococcus neoformans var. neoformans]
MAFDSQGQPIIAYDEVTSRPIIGHHPTGVPIFGTFTDDHLSSAGSGENLASPTTSNAVPSVPDLPDEKMVNYATPVHDTT
GAIYRKTPGLTTAFSGPAVPEIDELKSIVAGLLRSTQALADQATTGHDRHVPPSTRGSRPDKISPPRLGTHSSADPFALQ
RHLLALETYFRDALLHWSPGPAEHAWKISVANTSISQSGGRFTTWLELHGKHAETWDAWQVSLKSHILARGWESKLRHRF
MQLRCLDTTPAAFDAFFHLVISYQGILHDFEDPLSDVDVNRRLLDGVDALVTHRTKAALRARGKTVLSATSADLXEIMMD
VIDDAMLEARFLQVPTRPRHPPTVANVIAPAPAPPLIAKLAPAPSTTTKGHTAQQLDWLDPAKRLPLGDAGRSARAYLQS
INACFSCRVVGHHRLICPTRPPSTPPNASASVPVANLVSLADDDESDHHGVFAVDPVTDTLVQDASSALAGSVPLIMVNC
RFKADGDTVPALVDCGAGINVVDRAYAEQQGWQGRPIIPVGTKMADNRAGPVVDQEYVVDVIIGDTTYNATPFYAMALGP
RYRLILGLQFCRQHRLFDGAERLNHLLNAGGSSYTSLVQLQLNSITPVESPTVSTERHSHSDAILREFADILPANISDVS
HYPPICSSTSQVRHRINILPDAMPVARAGFRVPLAWRDTLRQEIEKHRTAGRLRPSSSPWAAPAFLIKKENGKFRFLCDF
RGLNSVTVKDRTPVPNIDDILQRAARGKVFAKLDLTDAFFQTLMHEPDIEKTAISTPWGLYEWVVMPQGACNSPATQQRR
LNEALRNLISVCCEAYVDDIIIWGATDSDLAKNXRAVLTALRNSGFVCSPSKSKFFVDSVSFLGHVISPNHIGPDPKKVE
ALRAWPSPGCVKDLRSFLGLLQYLRKFIPHIATKTSVLTALLPPNKTAEKAYESRKRQLAKGLPAERLESLSWVWKWTTS
AQXAFEALKEMVARITGLSPLSHEAILAGQTNLYLFTDASXTGLGAWLGTGXSPDNAQPIAYDSRSLTAAERNYPVHEKE
LCAIIHALKEWRPLLLGVPVHVMTDHATLKWFFQQPNLSERQKRWLLVLADYDLQISHIPGATNVIADAFSRLRNSDAHV
NALTMMVLSPNATFLDEVAXGYGQDPVMXIWREVDRCPPGVRTTEVNGARGVRTVLTXEDRLCIPEVLTXREQCLQECHD
AMGHFGVEKTLELXRCKYFWDGMASDVKDFVSTCPACQTSKATTTXPPGLLHSLPVPPAKFSDIGIDFVGPLPQSHSFDY
LIVITDRLTGWVALIPTVTTLTSSAFAQLYYDHWVSKYGVPQSIVSDRDKLFTAASWRRLNSLLGTKLKMSTAYHPQTDG
ISERSNKTVXQILRTWTDDQGRNWAANLQRVAFAMNNTIRRSTHHTPAELVFGKRLSLTPPLLPSTSATDPSLAQPTASE
WDLAAQRMALEEGIARDELLLAKHRQSVQANKHRRPDPVYXPGDKVYLNTAEFRHEYKTATNRSAKFMPRWEGPFTILXA
FPEQSLYELDVPVTSTQSTPRRHVSRLKPYRESEQYHQHAVPRLLDRPAVSSPRILQILEDRTLTPKGNHPKVYQVRARL
AGEGPKARWLSRDTAQDYAGWQEAWEDFIGEDELHLDVLDVTTDVPQMFTQG
>TABOR_DA_gag#LTR/Gypsy 1242-2576  [Drosophila ananassae]
MEWNKLYTELSNIKTNFDRSYKSLTQNRPIQTNTVRKHVEILVECFNEARMLIHKHRERLNQDHWSQVSKLLIRLRSNLI
FVKQKYSLEISIPTVLNTPIAVDTAPDSESTEANESESEEIPKVNLKIEDEDLNNLTIPAVYTDLDNSADSDTSSVIENK
IINFVTMAQSNIDFINTASKLIPVFDGKAENLTSFIDALQIIESIKGEHEELAVSIIKTKLKGVARNLIGNETTITEVIS
KLRGNVKGETVEVLSAKLMNLQQRNKTANQYTQEIEQMTKALEGAFITDGLPLELARSYSTQHAVKAMTKNCTIDKVKLI
MQAGTFSTMNDAVSKFVNSCTEATGQSNTVLYFKNYPQRGSYRGRGNYRGNSRGNYNNYNNNYQNNNNNYNNQNNRGGRG
QYRGNYRGGGNSYQGPNGNNQSNVRIAQNTDQNTSGNSQSPLNTQ
>TIRANT_env#LTR/Gypsy 6089-7692 [Drosophila fruit fly genus]
PHYLLTYHFRFTLVPTQAIHVHYLNDNAPIAKIELGKALLIERYKIISHVINLQDYSRCMEQFHLTINKFNPDSTLTDSV
TILKTKLTQAQVKLKALTPSYRNKRGLINGLGSLVKVVTGNMDANDNKEIHEELDNIKKNSEVSNDNLQKQVMFNNEILI
RFENITDHINNEQILISKFFDTSQNKIYKHLNLQDTLLEEIQYLNRINYNIELFINHLNDITESMLLAKINIIPKFILNE
QEMDKIKTILEKQNITVKNEQSIYNFLQMNTLNYEQKIIFNIKVPIFKQPFHTLARLVPLPINNTYFVITPNYLAYNINN
KKFHMTRKCPKLDNTFLCDENFYVDTPQNNTCLEHLLNGENSSCDVRETGPITDVFEAERGYIFAFNVNKLKVSLTNGSE
LSIMGSAIIRYINETIQINGIDYDGTVDTFPEQTDFDLPPMRKVTRNTTITVLSLEKLHLEATQTMDKILAVHHNTIQHT
WTLYTLLGLVTFLAVILWLHRRTKHIVHIHEDHHVPIYASSIPSLWPSLRTGGG
>Tor1_gag#LTR/Gypsy gi|49035812|gb|AAT48676.1| gag protein [Oikopleura dioica]
MPVTLEKRKMSDQAVVELTDKLSLIVKMTQCPAQLKNLAKTAGIKDEQSFLLVCRQNESMIQNFQNNAVVFKEMQDAAAK
ELAKKPDHVVLVPSHLLAKNLKEEKKQSAKQAEPADVKTLQQMVAKLTAENKGLQECAEEATTLHASAIEALKAASAHAE
KMERENKANQKPKEEIKREPSGTKSNASSTGGSQQPKTSREQPEERGNPVNASETRTANATKSKFVANPGKFQLKIWKTD
EQLDFWEHLSRNRIAIKNAKQAGLTDSQLISLFMLTLRPEDGFLDELIEEEERADFETFLETLGRYLSGSPSTMMNTMLN
TTRKPNESLIAFFIRLCSMYKTSSGKDPKSPEAAGFLHPIIVNNSTKIQKTELIRELETVERGRARVTFDALKSAVKKAQ
IMDDSNYSDSPADLVYKIDNTGGTSDENKSSPSGNAHGERVPEKNDGAQRWQRNWEDRPRRAWTTRPERGWDRDTRRGDR
AAYRNDKRQDRYEFRQSNNRRDPLCYNCNNRGHMWRECSTPLKERFIRLQKTIKDREASAREEKTPSGTSPKN
>TIRANT_gag#LTR/Gypsy 1449-2582 [Drosophila fruit fly genus]
MSKKFVYNLRKTTRSVVGVPPNTNRPPHPVRRPDSLLPISEEPKSISSQTPNMDSGNDSARPTPSPLAPTVSGISSLIST
TFKPKDIMAFVEHLPTFDGTPRLLDRFITSVEEILMLIRGADQTPYGLLTLRTIRNKIIDRADEALELANTPLVWDEIKS
NLIRLYSSKKSEANLLSELNTFSDNLTLGQLFFGISKVRSQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLK
TFVRIKSPSTLEQAYEQCQIEQTLYRAQNKRTNRPEQGPNGSDNKTYRNSYDSNYRSGRNDRNDRRGPYSNSNSNSNSGQ
NRPFNSHNRTPQSGTKDNRANTSNPFRAPSHSLNNIEENPQPDSNFQQTASGNQQGT
>Gypsy-171_DR#LTR/Gypsy 104-4753 [Danio rerio]
MDFDLIKFSLLPTLEEFDRCRKKDLILIAEFFNLTVSKEQKKQVIKDELYVKLVEAGVLPSRAVEGSEQEQDLASDGEAT
SGSESGSITVQKIDPMVTIRLKELELELKKQENETQLLRIKELEITADRDIKLRKLELEAQKIQSTKPTPLPRSSRPPSS
SSEAGQQPDFDVGKYIKLVPPFRETEVDSYFVAFERVAAKLKWPKEMWALLLQCNLIGKAQEICAALPIEDSLDYDKVKL
AVLRAYELVPEAYRQKFRACSKTAKQTFVEFAREKRALFEKWCVSNKTVTIEDLQELILVEEFKNCLPDNVVVYLNEQKV
SKLSEAAILADEFVLTHKTVFPAVRPPRIVQSDVREKGNYSFRPAAEINTPKPSDKKRVCFYCLDPTHLISNCKAWKQKA
SNKPKGVAFTSLTSSSVQSTPRSDPTVFKSFLQTGTVALPNSHDIKSVVMLRDTGSAQSLIRENTLPFSSKSYTGTNVLI
RGIEMGCTSVPLHNIHLQSDLITGPVSIGVYSQLPVEGVDVILGNDLAGTKVFPFPIVSAEPNNSSSDDALALSHFNSLF
SSCAVTRAQRKKFEDVLDLSESFLSLSPESTEHKLLIQPEPVQADAGVNEGDAPLKVGREQLITLQKSDVTLNKCVSAAA
DRTKISDAPVGYFWDDGVLMRWWQPSDRERDGAYQIVLPVGYRTQIMKLAHDHICSGHLGVTKTYDRIARHFFWPNMKSS
VSAFVRSCHICQLVGKPNQTVPLAPLQPIPAVGEPFERLILDVVGPLPRAKSGHQYILTIMCTATRYPEAVPLRSITSKS
VIRELVKFCSMFGLPKIIQTDRGTNFTSHLFKQLVKELQVEHELSSAYHPESQGALERFHQTLKTMLRAYCVETSKDWVD
GLPLLMLAIRSTVQESLGFSPADLVFGHAPRTPIKLISEQFLSKSPSHVPILDYVSTFREHLHKVWEVARKHLSATQAKM
KSRYDKKSVARSFQPGDSVLVLLPVPSSPMHARFSGPYVIEKKLSDTNYAVLTPDRRRKSRVCHINMLKAYVDRDRFDAH
PATKVPVVKIALATDYVPQTDGLSDKNMQTGVTLTNSTVLTTLEKNLSYLNDDHRSDVIRLIKMYPTLFNDVPSQTNVLT
HDIDVGQSMPIKQHAYRVNPNKRQVMREEVNYLVRNGFAVASQSPWSSPCILVPKSDGSLRFCTDYRKVNNVTKGDSFPL
PRLEDCVDRVGSSRFVTKLDLLKGYWQIKLTERASEISAFVTPDAFMQYTVMAFGMRNAPATFQRLMQKVLSGVQNCEVY
LDDVVVYSMTWEEHMVTLNSVLERLAKASLTLNLSKCEFAKAVVTYLGKVVGQGQVKPVNAKVESIVEFPAPSNKRELRR
FLGMTGYYRGFCKNFATVVAPLTDLLSTERKFVWDDKCESAFCSAKDLLCNAPVLSAPNFTLPFSLQVDASARGAGAVLM
QADDAGIEHPVSYFSKKFTRCQQNYSVIEKEALALLLALQHFEVYLSSGNTIVVYTDHNPLTFLARMSNSNQRLMRWALI
VQEFDLDIRYKKGAENVIADALSRIYIGD
>Gypsy-149_AA#LTR/Gypsy 189-3506  [Aedes aegypti]
MRWVQRLENAFAIYAIDDEEMRKNLLLHHMGPESYDIICDKIAPDTPRARTYQQIVDILETFFNPRPLEISENFRFKCRR
QGDKDAASPDESVDEYLVALRRIAVTCNFGQYLETALRNQLVFGIRRNDIRSRLLERRELTLQDARDIAVSMELSKKGGA
EIEGNQGKLDVHKVQHQPGKRNKSKTKINEGEKRFNQKGAGGSDISCYRCGEKSHLANACKHKQTECKFCGLKGHLERVC
MKKSGSKPSSARPSGKQNTVQTNFVDNSGNDCKDACAVVREVCSVNSISDNAKIWMKVRVNGVQLRFEVDTGSPVTIVSA
NCWKELFPAAQLRKCDTNLVSYCNTNIEVLGIMDARVEFDGQNSQLPLYVVKSEKHPLIGREWLSRLSVDWNILLRNKSA
VNEIRRGVSGSNAAASNDTAAAVKMVLQKFPRVFEDSIGKISRVQANLPLKKDVHPVFLKARKIPFNLQNVVEAELDKLV
AEGVLTKVNQSNWATPIVPVKKSHNRVRICGDYKQTVNPNLVVDRHPLPTVDELFASLAGGKKFSKIDLVQAYLQMEVAP
EDREILTLSARRGLYRPNRLMYGVASAPAIWQRQMESLLQGIEGVSVFLDDIKVTGPDDETHLRRLEEVLRRLDENGIRV
NRDKCDFFAEKIEYCGYLIDEEGIHKIQKKMEAIQEMRRPKNKDEVRSFVGLINYYGRFFRDLSTVLYPLNNLLKNEVSF
EWSTQCEKSFQAVKEQMQAETCLVHYSPELPLVLATDASPYGVGAVLSHIYPDGSERPIQFASQTLNRTQQAYLHVDKEA
YAIIFGVKKFFQFLYGRRFVLVTDNQAVTKIFGEHKGLPVMSALRMQHYATYLQSFDYEIRFRKSASHANADALSRIPLK
LADPDNVIDESDLVEMHQIETLPLTAAELAQATAEDSTVKKLIQGIKYGVLVEGKDRFGIDQSEFAMQKGCLLRGIRVYV
PAPLRKRVLEELHSTHFGATRTKSLARGYCWWNGMDNAIEEMIANCVECQSVRREPAKMSLHCWETPTAPFQRVHVDFAG
PFLDTYFFILVMHLRNGRRLECVVPSLLTVQFGCVVRFSAPLEYRQCSSAITVFSLRPSNFNSSCG
>Gypsy_env#LTR/Gypsy 4991-6507 [Drosophila fruit fly genus]
TFPLQLGSKLCQGKSEHCSITLSLISRFTLMMFIPLVVANARITDFSHANYIPVLDGDVLVFEQRDLLKHSSNLSEYASM
IDETQKLSESFPHSHMRKLLEVDTDHLRTLLSVLKVHHRIARSLDFLGTALKVVAGTPDATDLFKIKITEAQLVESNSRQ
IAINSETQKQINKLTDTINKVINARKGDLVDTPHLYEALLARNRMLSTEIQNLILTITLVKSNIINPTILDHADLKPLVE
QDTPIVSLIEASKIRVLQSENSIHILIAYPRVKFSCKKVAVYPVSHQHTILRLDEDTLAECEHDTFAVTGCTDTTHFTFC
ERSRRETCVRSLHAGNAAQCHTQPSHLREINPVDDGVVIINEAAAHVSTDGSPETLIEGTYLVTFERTATINGSEFVNLR
KTLSKQPGIVRSPLLNIVGHDPVLSIPLLHRMSNENLHSIQNLMDDVESEGSPRLWFVAGVVLNFGLIGSLALYLALRRR
RASREIQRTIDTFNMTEDGHKLEGG
>GypsyPi-1c_pol#LTR/Gypsy 1448-5889 via tfasty with GYLES1, (1 frameshift) [Phytophthora infestans]
MDPYDMILGMPWLEKHEPWIDWRGKAIGASRPAQSDRALVSHVPTSVRTRGAREGCQGTKASGRCLGVVDVYDDSEDVLM
VAAPRRGAGQVGNLGPQAGNLVPQAAAAVMNTENSVFRVGNRVPLTVAQTITEEEDVGYASCVGNTVPHAVAQTLTEEEG
VEHASCVGTTVPHEATSASDVVATTFLDVGSKAPRHRRRRQRRRRRLKSDPNFVPIDVSSSDSESRARAPPTRPVEECYH
FFDGETGLPVKASGVHLEPLPEVAEILNLEEMTAESFLANLKAGEIAEMVLMRPETTQEELNSSSVLDENVLENMNKQRQ
ARLGSEILKSPKDPVYPLVTEYADVVNKHPPTQLPSDRGVRHEIDLVPGTKYCVTRQWPLPHEQCEVIDAFFAAKAKAGM
VRESKSPHSTPTFCVRKPNGKWRLVHAYNKLNNATVPAQTPIPRKDVLLNNMAGSVLYSALDLVDGYYQILMRESDIPLT
AVSTSSGMLWEWLVMPHGLSNAPATINRLVTQLFDPLRTFVQTYFDDIFVHSRAEGGKTAMEVHLGHLRRVLDAMRANKL
YANIDKCVFASREIKVLGCFVSNVGVRADPNKVKAIAAWPTPRSQKDLRKWLGLANYLHKYSAGYAGFAKPLSSLLQKDV
DWRWEQEHQDAFDSIKASLQEAPVLALPDETKPFSVVCDASDYAIGCALLQDDTAGQERVISFQSRQLKAAERNYPVHDK
ELLAMKYALVKFRVHLLGSRPFVIYTDHASLRTATNSPHLSQRMARWLSFFAEYNFRVEYKPGKLNVLADALSRRPDYEL
AHITRATTDLYDRIRMAYRDDEAVAPIVKFLKAGTSAKSDWISSRQRSRLHRYELKEGLLYYRVEPTDPLRVVVPNDEDL
KFDTLAEAHDAPSSGHLGREKTFLSVSQSFWWTHMYKWVARYVKTCETCQRVKPAGHSSAPLQSLPVPADCWKSMSLDLI
FGLPADEHGNTGILVFVCRLSKMIHLASAPVTVTGEQTARLFVDGVFRYHGLPETIVSDRDPRFTAAFWKTLFPLLGTRL
QMSTADHPQTDGQTERVNRVLEDTLRSVCAAAPRTWSTQLPVVEFALNNAVHASTGFTPFFLNGFRHPRVPLTLRGDTDS
SILSGGEARKDLTSQVSDVRPVSLRKQVKSFMDTKLNIVSRVRDAMAAAQDKQKDYSDKQGRGNLSIFEVGDLVLLDTRN
LPLDTVSSVGSNKLKHRFIGPFAVLARHGASYTIDLPKSMTTHPTFYVGRLKRYFDPQGVADSQTPLDPAPRSEDRSQSL
TRSSEQAPKPRSGRQGCGQDRTPEGLHTNGPRRHTPSTLSTPGTHHTRTSGSVPQAAPDVATKPRSVGSCERPRSDRTKR
PGDPPAGAGSRPLAPPGPGGPQDERARSDSWPGRQHYRQSQGQVQSQARGHVDGGGQPQSPVSDPQSEHSDESGSREAPS
TRTRTRAPPPLLDRNGEVHFHVERILQEQRCRGKRQLLVK
>Gypsy_MT_orf1#LTR/Gypsy 706-2133 [Medicago truncatula]
MKKTKCYKFKEVDLVSLRELALKVKSQTGFRLRYGGLLTLLRTDVEEKLVHTLVQFYDPSFRCFTFPDFQLVPTLEAYSN
LVGLPIAEKTPFTGPGTSLTPLVIAKDLYLKTSDVSNHLITKSHIRGFTSKYLLDQANLGTTRQDTLEAILALLIYGLIL
FPNLDDFVDMNAIEIFHSKNPVPTLLADTYHAIHDRTLKGRGYILCCISLLYRWFISHLPSSFHDNSENWSYSQRIMALT
PNEVVWLTPAAQVKEIIMGCGDFLNVPLLGTRGGINYNPELAMRQFGFPMKSKPINLATSPEFFFYTNAPTGQRKAFVDA
WSKVRRKSVKHLGVRSGVAHEAYTQWVIDRAEEIGMPYPAMRYVSSSTPSMPLPLLPATQDMYQEHLAMESREKQMWKAR
YNQAENLIMTLDGRDEQKTHENLMLKKELAKARRELEEKDELLMRDSKRARGRRDFFARYCGSDSESDDAPTTSYA
>Gypsy-135_GM#LTR/Gypsy 39-4463  [Glycine max]
MADATRNRVLEREIEDRVENRLSSKIDERFMEMAASMQQTLHDSLTQSLALSISQQMQDLLHNNSKGXTHSPTGGSPIRG
ERSSYSCGTRLARIDFPRFSGNDVKQWLIQCDTFFSIDNTPEEFKVRLAVVHFEGKALQWHSSYVKSVGLQNLPPWSEYT
RILIERFGEVCDDPMAELMQLRQKGSIVEYHEAFDAIVARLDLSEEHRLSCFLGGLKQEVQMLVRMFQPNSVRRAFTLAK
MHEAATVHGSVTKSWNKQSKPEASSKPPLLPTPPKTISKTQDIPKTKQQASKTLTPAYMSDRRAKGLCYFCDEPFTPEHG
LSHKTLQLHVMEVDELQEGAEEEVLLENSTGSSSIDPQIFVHALTGIANFHTMRVTGYYQKKPLHVLIDSGSTHNFLDIE
VAKRLGCKSNAFDSLSVVVADGTQLNVSAVVRGFQWTIQQTKFTSDMLLIPLGCCDLVLGVEWLVSLGDIVWNFNKLQME
FYVKGRRHVLRGASTGLKTVKRQQLGKAMSTGVHLSILQVCDGQRGLLNSLTTQAVDKEVPPTLAKLLDEFSDLFQEPSG
LPPRRPGHDHRIPLVQGVGPISKRPYRYAKQHKDVIDKLVQESLSTGIIQNSSSPFASPVVLVGKKDGSWRLCVDYRDLN
KHTVKNKFPIPLVDDLLDELAGSSIFSKIDLRSGYNQVRMDPADVYKTAFKTHAGHFEYLVMPFGLTNAPATFQGLMNSV
FKEFLRKFLLVFFDDILVYSCSLEDHLLHLRKVLATMRANSLFAKRSKCYFGVSKVEYLGHFISKEGVSTDPAKVLAVEQ
WPLPKTLKQLRGFLGLAGYYRRFVKGYGGIAKPLTNMLKKDNFIWSDAAKLAFQQLKKKLTETPVLALPDCSKIFVVEVD
ASGLGIGAVLMQDHHPIAYISRHLNHQQQSYSTYEKELLAVVMAVQKWRHYLLNTHFIIRTDHRSLKFILDQKWTTAFQQ
RWLVKLMEFDFSIEYKQGHDNVAADALSRVEPVACQALAVHQVVSELVIKIKASWDSDPAVQRLISELQANSGSHKHYSW
KDGELMRKGRLVVGRDDALRQDILLHFHASAAAGHSGRNATLQRLKSVVYWKGMSKDVRAFVQKCSVCQKCKYETKASPG
LLQPLPIPDLIWQHITMDFIEGLPSSFGKQVIFVVVDRLSKAAHFMALSHPYSAADVAQSFLDHVFKLHGFPDSITSDRD
SIFLSQFWQDLMAFQGVQVQLSTAYHPQTDDQTEIVNRCLETYLRCMCADSPSQWSKWLPLAEWWYNTTFHSSIRATPYE
VVYGQPPPVNLPYLAGASKIELVDRSLLRREEMLKLIKFHMKRAQDRMKQLADKHRSERQFSVGDMVYVKLHPYRQISVA
ARSNVKLSPKFYGPFQVLEQIGAVAYKIKLPSGSSIHDVFHVSQLKKHVGEAVTSSSLPSSVEGDPLIKEPEAILDRMTV
KRRGRAVTKVLVKWKHSLPEDATWEFFFDLKQRYP
>Gypsy-52_BG_pol#LTR/Gypsy 1797-5723 [Blumeria graminis]
VKRQTLALSRCQGFNLYEDEDESIREVLLDNSPLELCSISSSNSMLLDSHLSNPRIRDPVRFHTTSLIDSGCTAMAFADE
ESIVKRFGIQTKPLLSPRSVRLADGSTQAAITRYFTFRLHIGSHSEILVFFVTNLSKCNPIILGIPWLRLHNPICDWNYM
TLTFASPYCQHYCLPWRQLHPSSDFHFQCSPNSTVQSCHDNDNKGDNFSNLKSGNRRVCSEFLRRKVDQTDIDKFLELKP
ELTIDHIKKKLPLEFRHHAAHFLPKNANTLPPHRFWDHKIDIMPGKQVPHRKNRPFSPAELLCIKKWINEMLEKGFIRES
SSPAAAPLLLVPKPSGGVRICQDYRGLNDITIKNRYPLPLIRETLDSIAGAQFYTKLDVIAAFNRIRIAEGYEWMTAFTT
RFGLYEMLVTPFGLCNAPATFQNYINHILHDALDQYCTAYLDDVLIYSKTRDEHTKHVDEVIRRLGNAGLQIDIAKSEFY
TKQTKYLGLIISTNGLSMDPEKVKAILNWRKPSTIKELQQFLGFSNFYRRFIRGYSGLIEPLTRLLHKNTPWIWSADQDH
AFMKLKSSFTQAPILTYFDYHKHTVVETDASNWASGATLLQKGNDGVLYPVAFYSSKHTPAESNYDIYDKELLAIIKALE
EWRPELAGAQYPFEIITDHKNLQTFLTAKQLNQRQVRWSEFLSQFNFLITYRPGSKAILPDTLSRLPGLKPNSALDERLQ
QRFRTMIPNHKVDPNILRNTLSIHVNSIHNSVDSLATISPQPALIDAIHEAYRENNIAKSMVESLENKSNRKWSESLGRL
LRRDKAEFKLINGLVYFRDRLFAPDHEDLRLNIVHRNHSSGPAGHPGRLKTLDLLQRTYWWPKMSKFVADFVRGCALCFR
TKTPRNSPPGFLKPLDVPIRAWVDISIDHVVDLPPCKRQGKIFHHILVVVDRLTKMRHFIPTTSLETTELVECFIANVYK
LHGAPDSIISDRGSAFVSEFWRRLNARLSITLKHSSAFHPQTDGQTEIVNSALNQYLRAFVNFTQDDWVDWLPIAEFSEN
NHVNETTGVSPFFANYGYHPRLGVEPPDPKPPNLSESLKKEYFRADSIANRFDCILTKLQALTRQSQERYEDNANSRRSE
APIYTPGDKVMISLKNLKTNRPKKKWDDKWDGPYKVLKVYNGAVAVELPKHIHINNSFHTSLVRPWTDPVITGQSSLNER
ESRDVAGRVAQRDDDGNIADKWIFEKIIDVHDEDIEKNGLTYLIKWKYNDEPSWQPELDLEGCENALQNFHRRNPHKPGP
PAWVKMASKPPQNPRQQLRRSERQRRPAK
>Gypsy-48_BG_gag#LTR/Gypsy 59-1186 [Blumeria graminis]
MSSSAPADMNLTPEVLNELSSISDVSQLVQGVXNXPELMLXAIQALVRSKXATXAELENAQKRAVMLEKQAAKGKRPSVD
MEXVMSHFADALKESKRPRSVMIPDPPVYXGSKEDFDXWRGNMLMKLNVNQDHFSDDQAXMVYIYSRLDXQCQAHLHAWV
XNGFIRFPSAVDMMDTLXVIFHDPNLERDASARLHNNPQNNKPFSXWISEIRRDAAIANYDPNSVYLRDLVFHNLSLDLK
KALVHERGLRKMDFNEAVASLQDMENDQKFYLNALSDSNQHQPPSQAPQRDPHLSRFNPAGDPMDLSAADVRPRGSLATE
EKTRRRQLGLCLYCGGNGHLVRSCPIKPSRIQLHGKSAEIPESAPILDSGNARALQ
>Gypsy-62_DWil_gag#LTR/Gypsy 1908-3251  [Drosophila willistoni]
MEWEELLLHIQNIKENFKKSYKCVTQNRNIQKETINKHAKILVDSFNEARNLVHVNRESIGKANWSKISNLLIKLRTNLI
SIKTKYNLDIFVPTVLNSPLSIDTCKKETEQEGEESETSEEEIEEKDLNDLTIPALLTLPDIEALSEQDNESDLDINTSV
INTTDRMAELNARRAYMKDINIAIPEFNGTKMQLKRFVTALRLVDMMKGDYENIAVEVIKSKIIGPTLYEVEEETSIEAI
IQKLQGFVIGETSKVIKARLKNTTQKGKTADEFTSQIDNLRKTLQSAYIEEGMPAALALKNSTDDAIEAMIGNCEHNRIK
NILDSGNFKTMDEAIAKYLQKSTEISGNPNTVLFAQRNRGNYNNKYNYRGRGNGRGYYNNYNKNNNGQNFQQNGNNSYRG
NNRGYSRNNNRGNRGNNRQNRGYNSNNSNVRVAQNNSGNSQQPLDTQQ
>Gypsy-89_GM#LTR/Gypsy 55-4586  [Glycine max]
MGDRLDLLEEQMGEVKSTLQALALQMQEQSTSIAQQMQQQSLVLSELSKQIGQKVNENSNESEKSMDDYYESRFSGKKVK
LPVFEGDDPVAWITRAEIYFDVQNTSEEMRVKLARLSMEGATIHWFNLLMETEDQLTWEKLKKSLIARYGGRRLENPFEE
LSTLKQTGSVEEFVEAFELLSSQVGRLPEEQYLGYFMSGLKQPIRRRVRTLNPQNRMQMMRMAKDVEEELKEEDDDGDRA
YGKKLLGRSEPSGLGSKFRSGFNPGQKEMSRSTNSGWANPSRKTGSVGSNSKSTSSLSSTGKKGEYDRRSGGSEKWKGVR
NEEMEERRAKGLCFKCGGKYHPTLHKCPERALRLLILGEGETMNDDGEIVAMEAEGSEEEEDQEAECNLIGILGKMGEYQ
TMKIEGKLANVTVEVLIDSGASHNFISPKLTMALGLTVTPTTVRSIKLGDGHRVMSEGVCRGVRIALGTQNFVIDALVLE
LGGLDVVLGVSWLSTLGKVVMDWKDLSMQFWHKDEMVTLQGQSGRQLQQGFLNSFLEDRKREFSNEWWWSPNVKIEGGKE
QINKGIAEVLGSFPQIFQEQITLPPEREQVHQINLLPNHGPVNVRPYKYPHHQKEEIEKQVAELLQAGVIRPSMSAFSSP
VILVKKKDHSWRMCVDYRALNKATVPDKYPIPIVDELLDELYGATVFSKIDLKSGYHQIRVHEDDVHKTAFRTHNGHYEY
LVMPFGLMNAPATFQSTMNHIFRPFLRKFVLVFFDDILVYSSSEQEHLTHLKQVLTVLMKHCFVANRSKCKFGCLQVDYL
GHIISGEGVSVDPEKIKCILEWPEPKNVKGVRGFLGLTGYYRKFVKDYGKIARPLTDLTKKDNFLWRETAREAFNQLKKI
MTTSPVLVLPNFSIPFEVECDAAGRGIGAVLMQNKQPIAYFSKALSDKNLAKSVYEKELMALVLSIQHWRHYLLGREFVV
YTDHKSLKHFLQQRISSPDQQCWLAKLLGYQFEVKYKPGPENKAADALSRCYDEGELTALKSGPTWVDSKQLLQEVKQDA
SVQQIIAEVELNPSAKPGFSVQQGVLLYQGRLVLGKNSPSIPALLKEFHETPMGGHSGYLRTYRRIAENLYWVGMQKTIR
DYVRACDVCQRQKYAATSPGGLLQPLPLPNAIWEDISMDFITGLPKSKGFEAVLVVVDRLSKYSHFILMKHPYNAKTVAE
LFVKEVVRLHGVPNSIVSDRDPLFVSHFWRELFKLQGTTLKMSSAYHLETDGQSEVINRCLESYLRCFAADQPKTWSYLI
PWAEYWYNTTYHISLGKSPFEVVYGRQPPNLMRFLSNETKVAAVALELQDRDEALNQLKLQLLKAQQQMKYYADLKRKNV
QFEVGDWVFLKLRPHRQQSVVRRINQKLAARFYGPFQIIAKVGEVAYKVQLPEQSRIHPVFHVSLLKKAIGDYQVQGELP
KELEVIGDDEMYPVKVLGSRVTVQGGVSIPQSLIQWNKKSIDDVTWEDNAVIRGQFPNFSLEDKALSEEGG
>Gypsy-85_GM#LTR/Gypsy 28-4523  [Glycine max]
MPNPDESSSSYDKLEDVLSRLTKQQLYLEESVNAMTLKIEELLHRVSPIVPPSQPTPTPLPHPQPATPIHRLKLEVPRFD
GSEPLGWIYKINQFFYYHNTPEADKLTVASFHMEGRALAWFQWMNTTHQFPSWPAFLEALRTRFAPSQFEDPSGALCKLT
QTGTVAQYLADFEDLANRTIGLPTPFLLSCFISGLTSEIRREVQAHQPATLVQAAGLARLQEEKFADMRTPSRHRPAPTP
PLSPRLNPTIPSSPIRVPSPSSPPQPFPLPSPNLPPLLPSPRNPPQAWKRLSPEEIASRREKGLCFNCEEKFHRGHKCAS
RFFLLISEEDDPANLLITSSDLPNTITHDPPQLQPPDPPDSPNSYPAQISLNSLAGHVAPETIRLMGSISGHPLLLLVDG
GSTHNFVQQQLVTHLGLPCRETAPLRVMVGNGQYLECTSICDAINIHIQNQTFIVDLHILPISGANVVLGVQWLKTLGPV
LTDYTSLTMQFFYQGNLIKLQGDPEATLSSLSSSQFRRLCQTQPSGLCFHITVLSEEHSTSSEPVDPSIQSLLTKYNILF
RQPQTLPPERTTDHHIHLLPQATPVNVRPYRYPHFQKKEIEQQVETMLQKGLIQPSNSPFSSPVLLVKKHDGTWRFCVDY
RALNSLTIKDRFPIPTIDELLDELGGAQCFSKLDLLQGYHQIRMHSADIPKTAFRTHHGHYEFRVMPFGLCNAPSSFQAT
MNLIFRPFLRRFVIVFFDDILIYSGTFEDHLRHLDITFQVLLDNQFVLKMSKCFFAKTQVEYLGHLVSGRGVEPMTDKVA
AIVNWPRPQSIRAVRSFLGLAGFYRRFIRGYAMIAEPLVRLTTMETLQWTPHSQQAFENLKSALATAPVLALPDFQVPFT
VETDASGNGMGAVLSQKGHPIAYFSKPFTPKLLSASTYVRELFAITSAVKKWRQYLLGHQFTIITDHRSLKELLTQVIQT
PEQHTYLARLMGFDYQIQYRSGAHNQAADALSRSPENATPEYPASQFLILFVPCLTFLEELKHQVTINQQYCQKRQAILD
SPDSHSDFTIHQNFILQKGRLWLPRDLPIIQSLLQEYHSTPMGGHAGVTKTLARLSENFIWPGLRADVVTYVANFRECQV
TKYETKRIAGLLCPLPVPFRPWEDLSIDFVVGLPPFQGKTVLLVIVDRFSKGIHLGILPQVHTAHMVAQLFINIVVKLHG
IPRSLVSDRDPLFISGFWQELFKLSGTHLRMSSAYHPQSDGQTEVMNRVIEGYLRAFVHRRPTSWGKFLPWVELSHNTSW
NSSTGSTPYEITYGRKPFSFPDYIAGSSKIDAVDDLLLSRDEVFTTIRRKLLKAQASMKKTADAKRREVNYEPGSWVLLK
LRPYQQSSVKGAQAVNGKLSKRFYGPFQIIERVGKVAYRLKLPDGARIHPVFHYSLLKPFHGDPILDSPNSLPTRFINGQ
PMLTPLAILDYRRHKERDTWEVLVQWHGLSPDESSWEDWEQLKQDHHLEDKVILQGPKE
>GYVIT1_env?#LTR/Gypsy 4832-5854 [Vitis vinifera]
MEHLLAPRDFFYPRVVTDFYQTMTTKEVRNPTLIHFIIDGRHGILGARHIAEALQIPFEPTQFDNFKAWTNPTELEMVRT
LTRGAANRSHLLRGELPPVMFLIDAFLRHNIYPLQHWTQRRGVLLEALYKMSEGFFFGPHHLIMAALLYFEEKVHKKKLQ
RADCIPLLFPRLLCQVLEHLGYPSEPQQERKRICREPFTLDKWNNMTAYKIDQPGQPQPAARRASPRHPPXGITLATPAI
PRASPXAPAPSQPSTSAEPRMAIPISEYRELCRALETLTASQSNLAQELAAIKACQEQMLASQAQQAAILRQLQVHFDLP
QAVEPSTEDSTRATLSAFRVS
>Pifo_gag#LTR/Gypsy 2120-3202 [Drosophila yakuba]
MSKKLTQNIKKTAQSVLGVPTPVSRTIRPNTRSSGLPIVPEIIDHPLTPNMMDSGNASNNSAHSVRPGPPSLTPTVSGIS
SLSTTFKPKDIMAFVEHLPTFDGTPRYLDRFITSVEEILMLIRGADHTPYGLLTLRTIRNKIVDRADEALELANTPLVWD
EIKGNLIRLYSSKKSEASLLSEMSSFSDRQSLGQLFFGLSKIKSQLFSILKNTELNHNIVEAKRTVYNEVCLNAFITGLR
EPLKTFIRLKAPQTIEQAYEQCQIEQSLYRTNNRGPNETFTKNRRDNQNTRDRRHDGRTNNDRNAPYPNNNYNQQPNSRE
TNQSSTANPFRTQSGRLNNIEDDTPDTNFQQAASVTHQGT
>Pifo_env#LTR/Gypsy 6524-8112 [Drosophila yakuba]
RKNKFYCRFTIPTIYAISIQPLTNNTPIAKIELGQALIINRYKRVSHVINLEEFSKCIEQFHKTLQTFKYDDTLIDSLAI
LKSKLGQAQTKLNALTPLKRNKRGLINGLGSLVKAVTGNMDAEDAREIGKDIENIKIALSTVNTNYQTQDVFNNEILIRF
ENITNHINNEQVLITTFFENMQNKIYKEENTLEKLQYINRINYNLELLLNHLNDIIESMLLAKINVIPRFILTEQEIYKI
KMLLENQNITIKSEQHIYDLLKMNTLSYENNIIFTIQIPIFEKDNYKIARLIPLPINNKYFVMIPNYLIYKNNVNKYYLT
QNCPKVDDTFICNKDAYINTPQNDTCTQQLLDSKNSSCDVQERGPVADVFEAEKGYIFAFNANNLKAQLKNGSEITINGS
AIIKYVNETIRINGIEYDNGVETTFEHLDLILPPLKEMTRNKTVEILSLQNIHLEAIETSNKILTIHQTATQHAWTLYIL
LGFVAILTVTAWLLRRTKHVFHVQDHNHHLPIYAPAIPSLWPSLQTGEG
>PYRET#LTR/Gypsy 59-5491 via tfasty with AFLAV, 7 stopcodons. [Magnaporthe grisea]
MSSQTSKNNTPNTPATNSKAAQKAPVRPKDDNDNKDEEDQFRRQVAQTNQKLHEQTFRATQLQKELQAFRISANVTSTPF
NGREKLKLNPPTTFDSTPGQFKRYLIxVRIYQTFHLEIFRSKTKKVVHAAIFLRGRTLSWFEPLLQKWLNIPPEKRRQKV
TDIFSTFAGYKRTFRSLFQEPDKKRQAERNLANLRQTKSASAYTTEFKRLATRLDITEKTKILQFYQGLKLRIKDEVSKL
DRPEDFLEYVELAIKLDNRIYERRQEKQGGQRIFVTLIRQTNTGRKYQHPQPTYHRNNGGWQQPRHMAPQTYNTAYSTHN
GPMDLSATQHKKPRKDPKSGKCFKCGKTGYIAKNCPRNQENVPNFRGKTEKPRGFNATNYQQLRPNQHSTINWTTCYNDN
CMVHNSSKNDAGWYPQKPRGIRTLTVKNRVPLGTGxPTKLYRQKTQLPEFTDSDASGKSDEEPLGQTHHIRTTNQSLIQK
LSEDSEGKSSEEETMPSSQYNVTKENNPYIYEKKHIDLYRDDQSVQFPGLPFQAQIRHPTGPVNAIFGDHPTLDTKHPxY
AEIFWAKCFRNNCGLHLSRKIVHNFFPRRRKATGIYEIYTTTDLPNWEIKIKLNIEPAAIFTPNDNYPMACCNQKQFPWY
KCTRSVCKVHMLAKAQAWHEQKSRQPGPAPMTRIMWNPNVRDNEITTNARKTPVPAKHPLDLVETRNGTGHRTATTGTKQ
RTLNATQNTIAAYEHIFLDIRLDGKPIRALLDNGAQGNYISPRVVAKRRIPWQQKKEPYQLQTVEKKAVLYGNGTIKIET
VHLWMESYGRKEQITLNITEIGDKNVILGIPWLKKSNPRIDWTTGQIQWEEPLAFKGKSEKRTSRNERRAxERNQQKIMA
LLRKSEPRLEPISEESRLSMSEKRSNFTTLIDNIPAEYRIYKRLFSPEFETGLPEHSPFDHEIPLKKGTQPKFHKIYGLN
PTQMEALNEYLAKNFKKDYIRPSISPAGYPILFVPKKNGKLRLCVDYRQLNDITIKNCYPLPLIREFRNMLYQTQWFTTL
NLKGAYNLIRIKEGEKWKTAFRTKRGYYEYLIMPFGLTNAPATFQTIINHVLRECLNIFVVIYLDDILVFSKTLEKHKQH
VHTILQKLQNAKLLVEPEKYLFHSKQINFLGYIIAPGEIRMEKSKIQAVKEWPQPQNWTEQTQQAFEQLRDAITREPILK
IPDPTKPFEVETDASDYTIGGQLNQRDEKGRLHPCAFFSQKLHGPEFNYQIYDKKFIAIIRTFEKWKPQLSGTKHEMLIY
TDHKNLTHFTISKILNKRQIKWSEFLSKFHFRIIYRKRTENGRADALNRRPDHENIVPKEIRVILTTDGNGNLLPTYRSL
ITTNTVTTPKKIRKIHGNKAHGHQGISKTWKRLKQHYNFKRTRQKIRKTIKDCELCTKSKSAKHKFYGLLQPLPAPSKVW
QTITMDFIVKLPLSEKPFTKTKYDSILVIMDKFTKYAYFLPYKKSSNAEEIAYYTFLQIIVSNYGLPKNIITNRDKLFIS
RFWKSLMEQLGTNHKLSTAFHPQTDGxTKRTNQTLEQYLKYYVNHKxDNWVRLLPTAQFVYNSLKNENTKTTPFYANYGF
NPTAYGEPRTTITAPRADKQASELRQLYKKLQQELKFVRKRIMKYANxHRIKGPSFKKGNSVYLIRRNIKTQRPNNKFDF
KKLGPFKISKKISDTNYRLSLPDTMKIHPTFHVLLLEPAPYGTSIQKTIEIDAEQTYNVKQIFDHRRNHGKIKYFIKWEN
YGHEKNIWEPLNHLQDCQEPLRQYYQELDLRANQPKKRGRPKKTPPTIPKN
>RAM14_MT_gag?#LTR/Gypsy 213-1040 RAM14 has lost most of the pol region [Medicago truncatula]
MLARFATGASFSADSRGGGRDSNSRFLPFMFQMARHLLDLGSPLQRRTMARAVSAYISSSTSDVRPSSPSGTQLTLGTEE
TVQFMMVNSLLSESYESWLQHRRAFLQRGIYHAYMQHTHGRTTARSSSVSASVQGVESGSTGQSATTEAGQNDELLSIIR
PMLVYTGLIEQLQHFFKVKKLPSATPASIDGVSSAAEGEDESGNLEGWELVMKERLLNVKELLGFPKEMISWLDEINSAS
DLQEAFDIVGVLPEVLSGGITRCEDFVQAAISAGKS
>RAM12_pol#LTR/Gypsy 854-4492 [Medicago truncatula]
MMRGGPKRRDAPVEIVCYKCGEKGHKSNVCTKDEKKCFRCGQKGHVLADCKRGDIVCYNCNEEGHISSQCTQPKKVRTGG
KVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCP
LSMFGRDFEVDLVCLPLTGMDVIFGMNWLEYNRVHINCFSKTVHFSSAEEESGAEFLTTKQLKQLERDGILMFSLMAYLS
LENQAVIDRLPVVNEFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRMSASELAELKKQLEDLLDKKFVRPSVSP
WGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYG
HYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFIDDILIYSKTEEEHAEHLRIVLQVLKEKKLYAKLSKCEFWLSE
VSFLGHIISGSGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCESSFN
ELKRRLTTAPILILPKPEEPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYLYG
SRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSALMVKEFDLLEQFRDLSLV
CELSPQSVQLGMLKINSDFLNSIREAQQVDVKFVDLMIDSNQTEDGDFKVDDQGVLRFRGRICIPDNEELKKLILEESHK
SSLSIHPGATKMYHDLKKLFWWSGLKRDVAQFVYACLTCQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRG
HDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQ
TDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVH
QTTEKVKMIREKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERVGTVAYRIG
LPPHLSNLHDVFHVSQLRKYVPDPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESLTWEL
ESKMQESYPELFV
>Ogre-LE1_gag#LTR/Gypsy  2500-5538 via tfasty with Gypsy3_MT_gag (1 stopcodon) (RepBase has gag-pol, but this requires an intron) [Solanum lycopersicum]
MVDDNSTTERVEACEGGQLHSNLILRLERKISQLEEEVANMRDLAKLSISLGTQFGENIDNPPNQTATPDNPPIHISPPE
PIRPNAFPPPHAQNTQFPFHHYYQHTKPTVPETTPNTNIPHTFENNNPNPIYVETAPLTHDLHESESHQKDILIKTLTER
LDNLTNRVQHVEGNKKLGGLGYEDLCMHPDVELPEGYKLPKFETFNGIGDPKAHLRMYCDKLVGVGRDERILMKLFMRSL
TGEALSWYIEQDSRKWIKWVDMATDFMNRFGFNIENAPDWFYIQNLKKKPSESFREYAIRWRSEAARARPPMEESQMKDY
FIRAQELQYYDRMMLVAEKSFAEIIKLGERIEEGIKNGTIINLEALQATNKALQSGGMTESRKKTGSVMMAHGTRTPLRH
KTTNPPPSPYPHTPYLHTPYPQHPSAPPPISPQPMPIYYQNAPPQYLHASYPVYNVQPTHFxTPPPTQTPNYRNRPSYER
RPTKTYTPLAEPIAQLYERLKQAGYVSPIPALPVDVRAKWYDPNKVCAYHSGMKGHTTEVCRALKDKVQMLIDTKTIQLK
DPTPNVANNPLPNHQVNMVEAGDVWDWEESIWAVETEEAMPTTAQAPLIVQGLAPFEVEVAAPRPPFAVYKASSPTQCDT
HAVPWDYNKRETNVEETDVATGVTRSERIYTSENLVQGSSSKSKAPIVELEDQSIWKKVKAKEYSVIEQLSKTPSQISIL
ELLQSSETHRDALLKILGEAYVPSNITHGEVSQMVGQVFEAYKISFHKDELPIEGTTHNKALYISVQYQDKVINKALVDA
GSGLNICPLSTLTRLGVDSAKIQTWKMNVRAFDGSQRGTIGEITLDMLIGPVTFPIAFQILDIPSSYNLLLGRPWIHMAG
AVPSTLHQCLKFEWDYEEVVVHGEKGHPVYTIEGRENMDGEMYHTVELVGNIELQPWFSQKIIDMMAWFGFELGKGLGAK
LQGIVEPIQPVRHSTTFGLGYKYTTEEWLDWRPPRDGYYYPLKKPIPPLYQSF
>LATIDU2_TM_gag#LTR/Gypsy 1270-2322 [Triticum monococcum]
MNDSCLCKFLNAELPLLNISRMVRPGGRGRGGNPPPPPEYMAGMMQQFELNRQFMENIMAQFPRPNMNQQPTQVTLQDFM
RLNPTVYRSSTQPLDADDWLRDITYEMESADVAPASYVTFASFFLKGPATQWWDSHRRTLPAGTIITWPDFQAAFRARFI
PQGVMDRKKREFRNLTQGNKTVEAYQREFLDLSRYAEEDIATDARRQEKFRDGLQADIKLALLVHDFTDFATLVNKAINV
ETGLQEYQSSHRRSRDTGSSSGPSLQKRKIWIPNSMYQPDAPAPRQSYAAPRLPTAPTRQPRLPAPPPQAPVPTPENGLC
SRCGQPGHRARECNQKQNQLALPATGRGNN
>JODY_HC#LTR/Gypsy 102-725 [Hordeum chilense]
TLAGYNFRVIPGLIHRHDVIPPRLNREANTSVYILMARGLGPSPPPSCMLRHRPGAVLVHPNPRAARSRPPGRESLYVTS
AELSKECTPPRAHTYSRVVVSATNGQRLLRSVPPSRRPVSRTCGKDIADRPRLRLYPLDALPAHPTKFHAHGYPWGQPVF
QSFTRVPLGPTRPITHESMSGLGGCASVLQVDIRGITLDIPHSGYVR
>LycEPRV_pol#LTR/Gypsy 4224-6137 via tfasty with Gypsy40_AG, 1 stopcodon. fragment (TABARE_p3 > 93% identical) [Solanum lycopersicum]
MKIFILAKIIVEGYYNRYYTPMIDTGAEANICKYNCLPEDKWEKLKTPMVVTGFNNEGSMIKYKAKNIKIQIWDKILTIE
EMYNFEFTTKDMLLGMPFLDKYYPHIITKTHWWLTTPCGNKIGAKRVNNKQRKTMEWIKGSEKINQEMENINNKQITQLE
IIIFVIDKVKLINEQIEQLYSEDPLQGWEKHKTKVKIELIDENSIITQKPLKYNFADLEEFKIHINELLENNYIQKSNSK
HTSPAFIVIKHSEQKRGKSRMVIDYRNLNAKTKTYNYPIPNKILKIRQIQGYNYFSKFDCKSGFYHLKLEEESKQLTAFT
VPQGFYEWNVLPFGYKNAPGRFQHFMDNCFNQLENCIVYIDDILLYSRTQDEHIRLLEKFIHIVKNAGISLSKRKAEIMK
SQIEFLGIQIDKNGIKMQTHIVQKIITIDENIDTKKKLxSFLGLVNQVREYIPKLAEHLKPLHKKLKKDVEYHFDDKDKK
HIRNIKNLCKKLPKLYFPDENKTFTYIVETDSSDHSYGGVLKYKYEKEKIEHHCRYYSGSYTEAQIKWEINRKELFALYK
CLLAFEPYIVYNKFIVRTDNTQVKWWITKKLDDSVTTKEIRRLVLNILNFTFTIEVIKTDKNMIADYLSRQSYTARTR
>MAG_pol#LTR/Gypsy 1045-4368 [Bombyx mori]
MYQMTLSNYKPVCIKVKVQNCLLKMEVDTGSALSCISKNVYDKYFSKEKLQACLLNLKFYDGSIIRPLGFINTIVKYQGV
SKMLDLYVIDKGTTNLLGRQWLAELNINIKISKPTSFKIQHSNFVTEHARDYNKLINEIVSRHKSLFDGTLGKYTGGTAE
LIVRPDAVPIYCRARPVPYALRERVDAELDAMLAAGVIKPVDHSDWATPLVVVRKADGGLRICADYKVTLNKVLAIDRFP
VPKMEDLFSNLSGNKFFTKLDLSQAYNQIVLSERSSEYTVINTHRGLFKYSRLVYGLASSPGIFQKLMVNMFKNVPNVVV
FYDDILIRNQDLDSHLKSIKEVLDILERYGLKIKRSKCEFMVTEVRYLGFIIDQNGVRVDPEKVKSIATMPHPNNVTELK
SFIGMVNFYSKFIQDLSAHLSPLYALLKKGKHWMWGNEQNAAFLNVKKFLCSTKALAHFDMSLESVLTVDASARGLGAVL
AQRGPGCQERVVAYASRALTTHELHYSQIHKEALAIVFAVEKFHQYLYGRKFILRTDHKPLVSIFGPNIGIPSAAASRLQ
RWAIKLSAYDFEIEYVRTDKNVADALSRLIESQKNDVASEETDLPEQTYLHFSTEALLIDYNVLKKQTSSDPILSRVLSY
LRDGWPLDIEINELKPYYNRKNELYIELGCIMWGHRVVIPSSCRNKIITELHDPHMGIVKTKSLARSYVWWPGIDEALET
ECRACTVCAAVADAPSTHAPRSWPWPSRPWSRLHLDFLGPIGGVTYLVVVDSCSKWIEAIKMQRTTAQAVISVLRDLWSK
FGLPKQTVSDNGPPFSSSDFQKFLIHNGIKHIYSAPYHPASNGAAENAVKICKRAIKKALKQNLNVDTALCRFLLAYRNT
EHATTGDSPANILQGRSLRMRLDNLKPERQSRVIAQQERSEQNAGGVQRQLEPGTKVWYRDYRGLDKWVPGTILKQLGSR
DYCVRSSFGTENHRHVDQLKLRVTKNIDKVDTFASIRKNISPELIAQNLDLRTQSRKFRLSFPMTSGEEPVAVVNDSGKS
SSPPKNSTPAQDAVSPIRGSPMRPAVPIDKGACNTGGKSINENVTPKRERPVRIRKPPVRYGFEEID
>M2_VM#LTR/Gypsy 3-757 [Vicia melanops]
DAGFLVTSEYRQWLANIVPVPKKDGKVRMCVDYHDLNKASPKDYFPLPHIDTLVDNTAKFNVFSFMDGFSGYNQIKMAPE
DMEKTSFITPWGTFCYKVMSFGLKNASATYQRAMTTLFHDMMHKEIEVYVDDMIAKSSTEEEHVEYLLKLFQRLRIYQLR
LNPNKCTFGVRSGKLLGFIVSQRGFEVDPDKVKAIQEMPAPKTEKQVRGFLGRLNYISRFISQMTATCGPIFKLLRKNQG
VVWTEDCQKAF
>GB:CAA79147 transposase (ISa-element) [Clostridium perfringens]
MNKKLKYLSKSIKESFDINEINKIAKDSKFIQRKGSITAKDFLMFNVFYGSDICTAPLSQLAAKYDMIFSKQLPKQALDK
RFNKYSVEFMKEIFIKFLYSQNNTLTNLERTLRTYFDRVIINDSISFTLPKEFKKKFPGSGGVASPSSIKVQLQYELLTG
SFMNIDIFSGIKNDVEYLKTMKKYKDYKDLKLADLGYFKIDYLKRLDKSGTAFISKVKSNTSLYIKNPSPEKYKVGTIKK
SSEYIKIDIIKLAEPLAAGETIELTDIYIGSKKELKSRLIITKLTEENKSKRIFNHIEGIKKKRLTLNQRRLDFNSINAY
ITNVSSNIITMNQVHELYSLRWQIEIIFKVWKSIFKINQVKKVKLERFMCFLYGRLIALLLSSTIVFTSKSIILEVDEKE
ISELKAFGNLIQYFPKLSFEIFKGEFYISRILKSVLSNFKRFGIKSKKNYKKTAFNILKLIKLESFEVTRFAI
>Q989G7_RHILO/143-335 transposon family T32 Pfam:PF04986
GITAVLHTWGSAMTHHPHVHMIVPGGGISPDGSRWISSRPAFLLPVRVLGKLFRRLFLTRLVALHDAGRVSFFGSMAHLT
DRRAFLRHLAPVRRKRWVVYAKAPFAGPEAVLAYLSRYTHRVAISNSRLIRLDESGVTFRYKDYRRDGADRQQLMTLGPD
EFIRRFLLHVLPKGFHRIRHCGLLAGSARKASL
>Q52101_SALEN/3-292 transposon family T31 Pfam:PF04754
KKNTTPTPHDATFRQFLTQPDIARDFMELHLPAELRAICDLSTLKLESGSFVEDDLRQYFSDVLYSLKTTAGDDIFMSWL
NTSQHLTNICFPPDTLCVGAAMQRHLEAGHKKLPLVIPVLFYTGKRSPYPYSTRWLDEFDDTAPGRQTLQQRLSRLVDVT
VIPDDEIAGHRSMAALTLLPENIFISGTWQNWLTGWRPFYGRISVFIAGNIAGTLYSAGRRNIRRRSLCTRTGTACAQHG
DALMTIAQQLEQKGIEKGIQLGEQRGIEKGRSEGEREDSENSPYHAPERH
>Q981L3_RHILO/137-327 transposon family T32 Pfam:PF04986
GFFAVLHTWGQNLSHHPHLHCVVPGGGLSPDGSRWIECRPRFFLPVAVLSRLFRRLFLEDLQKAFTAGKLRFFSSLAGLS
DAAAFRRHLDRVRHINWVVFAKAPFAGAEQVLSYVGRYTHRVAIANSRIVDIEDGKVRFRWKDYRDGDRQKVMTLEAGEF
IRRFLVHVLPDGFKRIRYYGLLGNRHRKEKL
>Q8VSD3_SHIFL/6-114 transposon family T34 Pfam:PF05717
TGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGK
VHLTPAQLSMLLEGIAWPHPKRTERPGIR
>Q96X59_SULTO/1-162 transposon family T33 Pfam:PF05457
MGIEIYQSVIPQKYLGWKSKYLLDCEEILKELDDVIRREFEGFKFTQYDPLTYLKMLIVMVLYRESYRGTIELAATNIVV
KRFLKVKEIPSKSSLHWFVHKFSDRIRDLLLKVFRRFESLVEEEQLPTHHLLAEEKFGRDIRLLDSFPVELPNGKKSIET
HI
>O31998_BACSU/1-248 transposon family T30 Pfam:PF04740
MKVFEADSLLSEADKRTKEYKELRSQMVKLKKAFKAVADLDDSKFSGKSADNIKAFYHDHVGVTDQWIDLIDMKIVFLSS
ISAKLEDAKMSDAYIEESFLEHELVNAYTKSKSIMSEQKKAMKDILNDINDILPLEIFSTEDFKDKLSSADDKREKTIDK
INKLDEDLKTEYAETEQNEQFIQQDFKKLQESTGKGKNATPIHYSAKAYRESDIHKKKGDIEQHSEAYLTVKKEEAKERE
IKELKKKL
>O05914_MYCTU/89-396 transposon family T2 Pfam:PF01385
KFEVEWPADPQRAGLVRSHFGARRKAFNWGLAQVKADLDAKAADPAHESVDWDLKSLRWAWNRAKDDVAPWWAENSKECY
SSGLADLAQGLANWKAGKNGTRKGRRVGFPRFKSGRRDPGRVRFTTGTMRIEDDRRTITVPVIGPLRAKENTRRVQRHLV
SGRAQILNMTLSQRWGRLFVAVCYALRTPTTRSPLTQPTVRAGMDLGVRTLATVATLDTATGEQTIIEYPNPAPLKATLV
ARRRAGRELSRRIPGSHGHRAVKAKLARLDRRCVHLRREAAHQLTTELAGTYGQVVIEDLDVAAMKRS
>INBD_SHIDY/1-131 transposon family T27 Pfam:PF03400
MIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHV
IRKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
>Q46532_BACNO/6-282 transposon family T2 Pfam:PF01385
KYRIYPNSEQALLIEKHFGCSRFVFNWALALQKRYYAMFGKSLSRTQIQSQLVKKKKTGKFAWLNEVNSQSLLNALLNVY
TAFTNFFKGRTKFPRFKSKKILGRSYQCPQHCTVSFEQGIINLPKIEGIKTVFSREFVGYIKTVTISKTATGKYYASVLI
ENSDILPTPTTVEPNLTVGIDLGINHLLNLSDGSKFDNPKYLANASKRLAVQQKIFARKQKQSKNYQKQKLAVARIHEKV
RQQRLDLHHKITHSLIYENQATSYALEDLAVKNMVKN
>P96722_BACSU/2-248 transposon family T30 Pfam:PF04740
SKVFESKSLIEEAKSRKKQYETLEEQLNTLKKAFQGVADLGDNFKGNGADNIKDFFQGQAEIVDSWLTLVSAQIAFLNGI
SGDIKDQELNDSYVETSFLDHELPNGDLKASEIVSAHKEEIDSILSGISDIIDLDMYTLDDYADKMGDAQKIRRDTITAV
DKLDESLTTEYQNLESLDNAVLTKYSVLMQATSNGKSASPMYYDKKAFHSNEVYKSVIEVENQGTTYIDAKTQQAEARRL
QEKAEEE
>Q48345_9NOST/5-284 transposon family T2 Pfam:PF01385
ETKLEGTNEQYQLLDEAIKTARFVRNACLRYWMDNQNIGRYDLSAYCAVLAANENFPFVAKLNSMARQASAERAWSAIAR
FFDNCKQNKTGKKGYPRFKKEQTHGSVEYKTSGWKLSSDRRYVTFSDGFKAGTFKLWGTRDLHFYQLKQFKRVRVVRRAD
GYYAQFCIDQERVERREPTLKTIGLDVGLNHFLTDSEGNTVENPRHLRKSEKSLKRLQRRLSKTKKGSNNRVKARNRLSR
KHLKVSRQRKDFAVKLARCVVQSSDLVAYEDLQVRNMVRN
>Q52848_RHILE/6-121 transposon family T34 Pfam:PF05717
AGVKVWIAGGVTDMRCGMNSLALKVQQGLGRDPHGGEVFCFRGRKGDLIKVLWHDGVGMSLYLKRLEAGKFIWPVSQKCS
AVPVSSAQLGYLLEGIDWRNPRWTQRPSKAGWPPAF
>Q8U2S1_PYRFU/224-293 transposon family T35 Pfam:PF07282
FNYVIKRLIEVAEEYSILVEVVEEAFTSKLCPVCGRPHEGARFTRGLFKCPATGLIFNADLVGAFNILKK
>Q97AM7_THEVO/154-220 transposon family T35 Pfam:PF07282
FYQIEKMIEYKARLLGIPVVYVDPYNTSKECSRCGLKGNRSGKEFKCPGCGHVDNADANASFNIALR
>Q8GF05_ENTFC/302-372 transposon family T35 Pfam:PF07282
WSKFVTKLQYKADWYGRKIIKVDKWFPSSQICSECGHKDGKKSLEIREWTCPVCHTHHDRDINASINILTE
>Q8YRS1_ANASP/285-355 transposon family T35 Pfam:PF07282
FGELLQILEWVAKNKNKLVVFIDPWYPSSKTCSSCGHILENLDLSIRRWRCPSCQSENDRDGNASLNIKRV
>Q897V1_CLOTE/106-177 transposon family T35 Pfam:PF07282
WSEFRRMLEYKASWYGRNIIIAPSNYASSQLCSECGYKNEDVKNLALREWICPNCGVHHDRDINASKNLLKL
>Q9HHG8_HALSA/296-366 transposon family T35 Pfam:PF07282
FDRLQTRLADKAADAGIPVQYVDPAYTSQICHACGHIGTRPEQAEFRCPNDDCWVSVYQADINAAANIAGR
>Q8YC21_BRUME/6-116 transposon family T34 Pfam:PF05717
SDLRIMIASKPVDFRKGINGLAALVSTALGPNPYSGDIYVFRSKRNDRLKMVVWDGSGMVLLTKVLEDRRFIWPAVHAGA
VRLSASELALLLDGLDWTRVEKKPVKRPAKT
>Q79UU4_BRAJA/6-116 transposon family T34 Pfam:PF05717
AGVKIMVATRPVDFRKGADGLAALVREQLHHDPFAGTIFVFRSKRADRLKIFAWDGSGLVLLWKRLEHSAFRWPPISDGV
MRLSASQLAALMDGLDWSRLHARDIGQPSAT
>O68645_PSEPU/6-114 transposon family T34 Pfam:PF05717
SQARIWLCTEPTDMRKSFRGLSALVRNQLKQDPLSGQYFVFVNRRKTQMKMLYFTPTGYCLWAKRLEQGQFRVRPSSSGQ
RPLNLTDLQLLIDGIEVQKYRQIKRFRGT
>Q9V0F3_PYRAB/297-364 transposon family T35 Pfam:PF07282
VRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGLVEDRDFIAVLNLRMW
>Q8VRK6_RUMGN/7-113 transposon family T34 Pfam:PF05717
AADEIYIVTGRTDMRKSIDGLCAIVEDQLHMDPRRSALYLFCGKRCDRIKALLWESDGFVLLYKRMEVQGRFRWPRNQLE
VKQLTWQQFDWLMSGLEIEQPKAFKPT
>Q8RQV5_LACHE/175-273 transposon family T12 Pfam:PF01610
HLCFDEFRGTHNGYHFICLDSDNHVIQTILPNRFKDTIIKYFMKFPESVRQLVRTVSCDLNSYYVDIAKTLFPNAKIIID
RFHIVQMINRALNSMRTDL
>Q48535_9LACO/160-258 transposon family T12 Pfam:PF01610
HLAFDEFRGVGRKLHFICQDGEKHTIVAILENRFKNTIIKYFLQFPEIVRKTVRTVSMDLNCYYGDIVRQIFPNAELVID
RFHMVQMVNRSFIGFRVQV
>P72947_SYNY3/1-119 transposon family T14 Pfam:PF01710
MAYSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPTKVERRHRKLDWEALKKDVEENPDARLIDRAKKF
GVRPSVVYYALKKMKINRKKKNYVIEKETGRNELSTIEC
>O34222_VIBCH/19-122 transposon family T17 Pfam:PF01797
VWTPKFRFKILKGNVAKELNRSIYILCNMKDCEVLELNVQPDHVHLVAIIPPKVSISTLMGVLKGRSAIRLFNKFPHIRK
KLWGNHFWARGYFVDTVGVNEEII
>O54303_SALTI/19-122 transposon family T17 Pfam:PF01797
VFAPKYRRQAFYGEKRRAVGSILRKLCEWKNVRILEAECCADHIHMLLEIPTKMSVSSFMGYLKGKSSLMLYEQFGDLKF
KYRNREFWCRGYYVDTVGKNTAKI
>Q75TX9_BACHD/125-221 transposon family T12 Pfam:PF01610
IIAIDEYKGDTKEGKYQLIIADAVTKEPLDILPNRYKRTIKDYLRRHGSKVQMVIMDMSPSFKAAVQEALGRPVIIADRF
HFCRYIYWALDGVRRRV
>Q9L909_ECOLI/156-256 transposon family T12 Pfam:PF01610
HMNVDEVAFKKGHRYITVVSDRDGRALALTDDRGTESLASYLRSLTDSQLLAIKTLSMDMNAGYIRAARIHLPNAVEKIA
FDRFHVAKQLGEVVDKTRQNE
>Q8YKX7_ANASP/151-251 transposon family T12 Pfam:PF01610
RLGIDEIALVKGQGNYLAVIVDLDTRKPIEIVKTRRIEEIGEVMKGWGLKVLEQIQEVSIDLWSPYKSLVEELMPNANIT
ADRFHVMKQVNDELDTIRKSE
>Q9XAV7_PSEAC/247-342 transposon family T12 Pfam:PF01610
VLGIDELYLNRQFRCVLTDIERGTILDILESRQYPVLYNYLANMQGRENVQIVCQDMWKPYRDVASQLFPKAAIVVDRFH
IQRMANEAMETLRKGL
>Q72AH7_DESVH/157-260 transposon family T12 Pfam:PF01610
GIGLDETATKRGHHYVTIFVDMDRESRPVVFATPGKGKECLKTFAAYLKGRQGNPENVVEVVCDMSPAFLSAAEATFRNA
AVTVDWFHVVQIFTKALDEVRRLE
>O52212_PSEPU/126-221 transposon family T12 Pfam:PF01610
ILGIDELYLNKRYRCILTNIEERTLLDLLATRRQDVVTNYLMKLKDRQKVEIVSMDMWNPYRAAVKAVLPQARIVVDKFH
VVRMANDALERVRKGL
>O18581_9HEMI/37-117 transposon family T1 Pfam:PF01359
YWRNPNTNKQWLDYGQTALPVAARGQFEKKSMLCVFWNFEGVIHHEFVPDGCSINSELYCEQLERLYSKISERYPALINR
K
>Q9ZUK5_ARATH/279-351 transposon family T23 Pfam:PF03017
SGLAAKKLLDWCSDDDVVVGEGEFCSAKQMYKIGRIPLGRNVAAVIAKSVLDATASLWRPTPSVFTLGEALRN
>Q9SI94_ARATH/59-131 transposon family T23 Pfam:PF03017
SKVVTRCQLLDWCSNEDIIVGEGEFCSAERTYKIGRIPLKNAAVVIVNFVSKEDAPVWRPTATIFSLGNAMGT
>O81450_ARATH/126-277 transposon family T24 Pfam:PF03004
RDTLWKQMWVHWNTEDAQLKSETTSNCRNSDRGGLGVHKHLAGQKSFVQVHQEMERLKRHVSYGEVFMQTHTRVDGSFVD
QKSQHVGEAYVKILEERMSEMDEDGPQVSDNSSQHSTHRTLIIDEKNKIFLKCTHIDDKGNPFGLGSLLETL
>Q9R9V3_PSEPU/123-318 transposon family T25 Pfam:PF03050
KHAIGEEVSEQLEIVPMQIRVIKHVRKVYGCRDCESAPVTADKPAQMIEKSMASPSVLAMLLTTKYVDGLPLHRFEKVLG
RHGIDIPRQTLARWVIQCSEHFQPLLNLMRESLLNSRIIHCDETRVQVLKEPGREPSSQSWMWVQTGGPPDRPVILFDYA
TSRAQEVPVRLLDGYRGYVMTDDYAGYNALAAQDGL
>Q9ZR00_ARATH/193-339 transposon family T24 Pfam:PF03004
DPQVWAGLVRFWRDPASEIRSINSRNARYPDPDDLGISKHRSGQTSFKSRARKHSEETGDLTPDFLVVLEMTHRKPDGTF
SDGKSEEIYKEVSSRIEEAESLLQLGDNIESSASGGLLVAVKNKIYAQVAPRKKGRLYGVGSLHNEA
>Q9SK21_ARATH/369-439 transposon family T23 Pfam:PF03017
KGNKCKLLDLKNAEVIVAEGRWETQEPSALVNGLPLGPKAVKVFVDSVKQPDTSLWRPTAEISYLEDCLMA
>Q05406_CTEFE/37-117 transposon family T1 Pfam:PF01359
SYDNIKRKRSWSKAGESSQTVAKPGLMAREVLLCVWWDWKGIIHYELLPYGQMLNSTIYCEQLDRLKQAIDQKRPELANG
K
>O18569_ATTPU/37-117 transposon family T1 Pfam:PF01359
TYDKNVRKRSWSKAGQASQTVAKPGLTRNKVMLCAWWDWKGIIHYELLPPGRTIDSELYCEQMMRLKQKAERKRPELINR
R
>O18570_9HYME/37-116 transposon family T1 Pfam:PF01359
VYNNVNRKRSSKHDEPAQTISKAELHQRKIMLSIWWDYKGVVYFELLPNNRTINSDVYCQQLVKLEEAIKEKRPELANRK
>Q9SYE6_ARATH/107-179 transposon family T23 Pfam:PF03017
KSAKKKCIMLDYKNGRERVAEGRVCTSNPSDTVHHMPLGPNASKVCVEVSKIGDAAVWRPNSEIQTIADAVIN
>O82334_ARATH/687-759 transposon family T23 Pfam:PF03017
LKANQKCKLMDISGKKRVVGAGRVHSIDPDQKVHHVRLGENAARVWVDVVNVDDTAVWRPSDEIEYMRDSLGS
>Q8TZR6_PYRFU/266-334 transposon family T35 Pfam:PF07282
YADLIAKIVYKAKLYGVPVIFVSPRGTSKTCSNCGYYVRTFKDDRVFRCPKCGFVADRDYNASINIAKK
>EnSpm4_ZM#DNA/CMC-EnSpm 7167-10535 via tfasty with EnSpm7_OS_p1, 1 stopcodon [Zea mays]
MDRGWMYNVPRPHPSYIRNLRSFIEAANKHANLRKSKEILCPCIDCDNKIAWRDIGVIQSHLLKRGFKNNYTIWSEHGEL
DPCEVPGNDERVVGILDLKVDGKVDNVDANQDFEEFDCEEMLRHMEPEMLSSVGSQKGLSKMEGLESASKEPLYDESKGC
DKEFTTLRTVLELLKLKASAGWSDTSFTDLLNFLSQLLPKPNKLPTSTYKAKKLISPIALGVQKIHACPNHCILYRGDFE
NASRCPVCNVSRYKKSYNQDCVKKFPKKNKNKKSTIGPESDDDTFDDMDGKKKSKNPALVMWYLPVIDRLKRLFSNPREA
ELMRWHAENRKQNNKQIRHPADASQWKNFDLMYPEFAKETRNVRFALGTDGMNPFGEKRSVHSTWPVTLTMYNLPSWLCH
KRKYIMLTILIQGPKSAGVDIDVFLEPLMEDMTKLWNEGVRIWDEYCREYFNLRAIIFVTIHDSPGGATLSGQKTKGKNG
CVVCVDGTASMYLKSSKKLVFMGHRRFLMKQHKYRKMKEEFNNQLESEGAPKPYSGKLVFEIVKNIHVVFGKGKNKGEKR
KRTDPSTYTTFKKQSIFFKYLPYWKDMEICHSIDLMHVTKNVFDSIIGTLLGMPSKTKDGLKSRNDLVDLQIRPELHPVD
SGKGKPYLPPASYNLSVEERTKICKCLRGVKVPTGFSSNISRLVRMKDLSLFGYNSHDCHVMMTVFLPIAVRALETEHVK
VVITRLCYFFNAVSQKVIALEDLDYLKAYIIETMCKLEMCFPPSFFDMQVHLIIHLVDQIKILGPLYLHHMFQLERYLGV
LKGYVRNRAHPEGSIMEGYTTEEVIESCIDYISDGTMIGVPVPKHEGKLCGRGRMGKKTFRVEDYKLVHCAHGSVLQHLT
IAEPYIEEHLNELRKENQNRTEDWIMREHKHRFSEWLMDKNIPFGDSSDEKTMKNLASGPSCFVTSWQAYDINGYTFYTK
SKDMKSVAQNSGVRIDAFDLHGQKTTYFGFIEEIWELDYGPSMKIPLFKCQWVQHPVGVIVDNYGLTLVDLKKVGYKDDP
WVLAECVAQVFYVLDPADEKMHVVISGKQKIVGVENVGDQDEEYNKYEEMFVFNGPERIKRVEKKIDKNLKPYMRKNGSS
xKI
>EnSpm4_OS_p2#DNA/CMC-EnSpm 7684-9846 (1 frameshift) [Oryza sativa]
MSGGTSASRSSRNPRSQNIWPTTVQVIREVDASGRPTAPRTVIGRWSNCCGIAARENFGILHKDIGKVTEAEKERAWTAM
EKWFTFPAEAKDRLKRKAFQKMGKAWKNWKSKLFTEFVNPPGNHTPFDEYPQITEAVWEEFCSLKTTQEFRESSEAHRVL
QQRNEHPHRLGTAGYIGKEAIWAQEDAAAAAANVPAPFSDIPEQRARNWARARGKVNPDGSVTFENKSDAVVYQELVSSL
LNLTNFRSYKVQVRINDYLLFxLGLVAEQASQSEVESAPKRREDDILTKALGTKEHPGRTRGIGSDVPWKHGLPQYSSQY
RKRKVSKEERDARLKAELKVEVIQELEASMNARVEERVNKVLADMNIPRVTTPAVQPTPRVQHDASPSQHRSSCASTEVP
APGLPIAPLAAVDHIEVIVVIRSISNKRHLHIPILNSNFHLMQGAAQCVLLARVHPTFAPEVAEGMAFKPSVTDKVHGAD
LLAGYAKVSIDTVKDTWSGYPLPVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPRPSRPTELTPPKSKLSIEAPRGPALS
VPHSPGGADMDLADIAQSLAPIKTTRKADSSPPLVKGQKRERGKGKVGELAPEPKRGKAATSMPVSKSGKVVRAPAQFEL
GMPLVEDNVLAVMGIACRELHKQYMELSNAKRKMRESSIVGHHDHQPFLSSPAYITIGFDDLFDLFRIRKLDTGLLKCYS
L
>EnSpm5_OS_p2#DNA/CMC-EnSpm 5607-7883 EnSpm6_OS close. [Oryza sativa]
MNLMVYRVTYSVQMVVRRRSKRKAGRNRTEQEVEMDTATSAPERTETSTSAGRSGKKRRGERSKNKLPKETYNVIALDQD
GKPIEPPIVRSKFSNACGTLVRTRCPINVKLWETVDDNIKTLLWNELQKYFVFPPGSEVRGRDYALKKMGDRWRQWKSDL
NRDYVQKNLPPFTDYGHISQADWDTFVADRTTAEALALRKKMSKLAKKNRYPHRLGSSGYAGHVDQWREIEQRFATAGKP
LLVDPMVERSKNWVWACSTGQVSDEGDILFETPDIEEVTTNLQQIVEKERSGQFVPRRERDQLTAALGTAEHSGRVRGLS
SKTSWKVGFPQDAPSYKKRDKYKEQLSDKIYAQVKEHFYSLAAENPTAFPRLFPDSQQPTQSAQQTTNVPSSVGSVQTST
FPVDSITGPTPCSLVVAISRAGKTKEVATGLAIPGRQFHNTAIPEDYARVQVAKVHSDHVSLELDIPAPEGIELLGDAVN
QFILWHRRDIILSAAVLAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPTPQPV
QASPTSPTKQHAPPAPPSVQTSPPTPQSALVEQVHIPDGTTSEPKSNTLEPRRIIPKLISTYDPKEIDKDKEKFMFSAFR
NSEKRKELAHVLSDSQKSVLAAQDEVQSWLSADVPETYEYGKPFLPTYLMNKLPWEMRVMHEWYMKASRKGLGFISIAVP
EGAFMSGPNGIFFISFQDLYALYKLDKMDVNLVAAFCL
>EnSpm6_SB_p1#DNA/CMC-EnSpm 1102-4581 [Sorghum bicolor]
MERSLWMYNLSRLDPSYVVEVQKFIDVAKIHARRTKAKHICCPCADCKNIVVFDNVEAITSHLVCRGFMEDYLIWTKHGE
GSSAPYMRTTDNTATNINVEDQMPPLNEFHAMPDVNETHTSDVNETQHANTDAVEDADFLEAIMNRCADPSIFFMKGMEA
LKKAAEDTLYDESNGCTKEWSTLRAVLQFLTMKARHGWSDASFNDFLRVLGDLLPKENKVPANTYYAKKLVSPLTIGVEK
IHACRNHCILYRGDQFKDLDSCPNCGVSRYKTNKDYREEENLASVSTGRKRKKTQTKTQQDKRSKPSSNEEVDYYALRRI
PALVIWYLPVVDRLRCLFANPEDAELMTWHASDERKDDGKLRHPADAKQWKDFDKKYPDFADDPRNVRFALSTDGMNPFG
ERSSTHSTWPVILTIYNLPSWLCQKRKYLLLTILISGPTQPGVDMDVFLEPLMQDMQTLWEVGVDMIDAFRKETFTLRAI
IIVTINDYPALFSLSGQFKGKVGCVECIDGTWHVSLPASNKIVYMRHRRWLPAGHKYRLQKMNKYFDNIDESKSTAPSGC
SKGHRVYKIVENVKFVFGKKTKDGKPRKVVKANEGDTFKKKSIFFKYLSYWKDLDVRHAIDGMHVQKNVFESVIGTLLDI
KSKTKEGLNSRLDMQHLKIRKELHPVLLENGKYHLPAASYNLNREEKHAMCVWLKNLKVPSGFCSNIRSLVSMKDLTFTN
YNSHDCHVMLTTFLPIAIRAINPVFLKMAITRLCYFFNKISEKVIVRDELESLQKFAAETLSQLEMCFPPSFFDIMVHLV
VHLVPQIEALGPMYFHEMWTYERFMSILNGYMSNRAHPEGSMIEAYTTEEAIESGGPLCNNLLKDQVSIGLPPLRHEGRL
DGRGRMGRKSFIPPDYNIVLEAHYSILQQLIIMDPFIEQHMKELREKNPGCTNDWVHKEHKRQFTTWLKDLDMTEESETI
KMLASGPSSQVTSWQSYDISGFSFSTSYRDTKSMGQNSGVRCEAIDDATGETTTYFGFIDDIWEVEYGPLLQIPVFRCRW
VQDKHVTVDNYGQRVLDLSKVGYKDDPWILANRAAQVFYVEQILSKDEKKNSHKPKHIAIPGKQQIIGVDGVMDLEDVNQ
FSEMSLFTNFQENIKNVEKSIPQSSLPWVRHDGQGRTVAR
>EnSpm5_SB_p2#DNA/CMC-EnSpm 5986-7665 via genewise with mRNA, 4 introns (6375:6463, 6620:6759, 6946:7034, 7209:7284) This is actually the translation of gi 242096375, as the consensus contains frameshifts etc. [Sorghum bicolor]
MASRRPRRDTPLAYARRPSLTGEAESSGAATAGRRRRERPSTTSTSQGRRRPRSPTPDPVAPTLEEEYQEDEDQDEDQVE
GQDEGHDEEHGATPEDEGGAASGVYQRGPAKLPPYPLPQVGHCFALYRPSKSWDLVSGTPVRAPPTILGTLCRKYFPGLV
ELASGAREPATTGQRYFRVEDEDVALAESVAHASCKKYVTDMHHEARVQAVIDFYASARSMTITKAQARTMTMTQEQYLE
VIPWWCRAHADTWAAIVARWFTQDYLDRHESQRALRLQRPAATHHQGSKSLPAFKKSYEAAHPDEEVSMFTAWAASHQTA
GQRTWDAAAPREAYSDPNVYDKVQEYTSAVRERHGPEYDVRTEPLDAEAVMRLGGGRKHGRAWIANAAIDPNTTPTLSQL
RAQSTSSSQPIRARPTPTVSMLASL
>EnSpm2_ZM#DNA/CMC-EnSpm 1317-3878 [Zea mays]
MCSTILESNMVGEDRRWMYEGWRMNDPSADWIRKTEDFIDRAFAISRTGTDVRCPCSMCRICRCQDKRTLSGHLCKYGYM
PDYEVWVYHGEDFPRENSPEANNTDDVEYDRMDEMLEDLREDPDLVFPPNHEEPPPPEVKKFFDLLKAAEEPLHEHTTVS
VLAFVTRLMAIKSKFVFSNNCYNELLNLISEVFPPNHKMPKDVYQCRKLLSGLGMDYQKIDVCPDNCMLFWKDHENDSKC
LKCGKSRYVEVKNDDGEMVTSTVAQKQLRYMPLAPRVKRLFLSRNTARHMRWHKERERGDTHVMTHPSDSDAWKALDDFD
PEFASEARNIRIGLATDGFTPFNTNAASYSCWPVFVIPYNLPPHLCMKYDYMFLSLIIPGPDHPGKGLNVMMQPLIDDLK
KLWKGVEAYDCYKNEIFTLRVAYLWSIHDFMAYSLFAGWSCHGTLTCPICGKDTDCFRLEFGGKICYFDCHRCFLPQKHP
YRFEVNTFKKGTIVTKGPPRRLSGIEIEAMLNNLKENESGDGYIGFGTEHNWTHKCGLWELPYVKALILMHNIDVMHQER
NVGESILSTCMNLGDKTKDNIKARKDLAKLCNRPTQELDENGKKPRAQFCLKPKQKKEVMEWLKNLKFPDGYAAGFRRAV
NLKTNKITGLKSHDYHIMMERLLPIMFRGYLKVSIWQALAELSYFYRQLCAKEINKDVMEKLETEIPVLICKLEKIFPPG
FFNPMQHLLVHLPYEAKVGGPVQYRWMYHIERALKKLSSMVGNKGRVEGCIAEEFKYKEVAAFTSVYFADEHNINAPTLR
YHDDKVGTRSNLQIFEIEGKTVGASTEYHPEREEKLDALLYMYENMDEMTQYFK
>CACTA_LP_p1#DNA/CMC-EnSpm 1089-4719 via tfasty with EnSpm2_OS_p1, 7 frameshifts and 3 stopcodons. [Lolium perenne]
MPKFSFGILRYPFSLYPQATMVRMMSEGVVARFLKAATAEMIKNNQKEIRCPCRRCKLTSLMDPKADMVRDHLLMRGFMD
GYRWEGDEDDYEFVHGISTRNKEGGEHHVEDPGHDQDVEDPGHDQDVEDPGDDHDHNVGDPGPDDEEDQDGGHHDDHEDE
DDGPSSMDWVQDPYLQELLLKQTSNARAAAREKAKIDQLEVDAVTPLYEGCRSEDTRLKVTLMALEMKVKHKMTDTSFND
NMSFWHDVFPQGNTCPTSIEEAKKIVCPLDLPHVKYHVCLNDCIIYRNEHAESTICPECSVRRYKMGKKSPQKVMWYFPI
TPRLQRIFADPKQAKLMRWHAEMRKGEDDADEPDKNKKDKMLTHPSDASQWNALNLEYPEFGDNPRNIRLGASTDGVNPF
GSQSSTHSTWPMFVWMYNLPPWLCMKRKYIQMSMLIEGPKQPWNDINLYMGLLKEELATLWDAPANTWDAAAEEYFPMRA
ALLTTVHDFLGYGYVAGQVVHGFNACVRCMDDTTYRQLDRDPGSSKTVFMGHRRWLRDNNLWRKRKDLFDSQDEPRRRTH
TRSGEQIDELLKNWKECPPPGKKRKAPEPLLKVWKTRSVFWDLPYWKILRVPHSLDVMHITKNVCESLLGTLLNMPXKTx
DEPKARYDLQSIGIREELHAGRPNDDDDDDDDDDDDDDDDDEAEDTQSRRKGKKAKNIEYYCPPACFTLSQKEIEQFFDC
LVGVKLPYGYAGKISRYLDKAKQRFSGMKSHDCHVLMTQILPVAIRGIMDAHVRETLFGLCNFFDVISRKSVGVRQLRRL
xEEIMVILCELEMYFPPAFFDVMVHLLVHIVEDIIQLGPTFLHSMMPFERMNGVIKGYVRNRARPDGSIAKGFLTEGCIS
FCTSYLEIENPIGLPVNRHLGELAGWGHREGSREMHVDFKGRIADFERANLVALQHIDVVDPWVVEHKTLSQRRTDDQGH
QRTDGDIIKEHNSTFTRWFKDKMVTYPIDEDSSAEEKLIFALSQGAEHNLMTFQAYDINGYTFYTEEKDMKSDYQNSGVT
MESYTGDVQQRYYGKIEEIWELSYAGENVPMFHVRWAKNIVKEDRHFTTMVIPEAKSKTAGAKVTAKYEPWVLASQVDQC
FFITDPQKLSRVVVRRGKRNIIGMDGAANELDFDQxAHPKMEDDDDDDEEPYTTRRSRTTLPKGRPFKRRSLGVPGLNYS
TARKKGKKIVKR
>ATEnSpm9#DNA/CMC-EnSpm basically is gi|25405954|pir||A96528DNA [Arabidopsis]
MAGNYNYPSSGGFNRDWMYKRFDEMTGNLSAEYVAGVEEFLTFANSQPIVQSCRDYYVWYMHGEDFNMNVGTSNYVDSTY
LRENYESVGNVVEDPYVDVGNVVEDPYVDMVNDAFRYNVGFDDNYHQDGTNQNVEEPVRNHSKKFYDLLEGAQNPLYDGC
RQGQSQLSLAARVMQNKADHNMSERCVDSVCQMLTDFLPEGNQATDSHYKTEKLMRNLGLPYYTIDVCINNCMIFWKEDE
KEDKCRFCSAQRWKPMDDYRRRTKVPYSRMWYLPIGDRLKRMYQSHKTAAAMRWHAEHQSKEEEMNHPSDAAEWRYFQEL
HPMFAEEPRNVYLGLCTDGFNPFGMSRNHSLWPVILTPYNLPPGMCMNTEYLFLTILNSGPNHPRGSLDVFLQPLIEELK
ELWSTGIDAYDVSLNQNFNLKAVLLWTISDFPAYSMLSGWTTHGKLSCPICMESTNSFYLPNGRKTCWFDCHRRFLSHGH
PLRKNKKDFRKGKDASTEYPPESLTGEQIYYERLSGVNPPRTKDVGGNGHEKKMPGYGKEHNWHKESILWELPYWKDLNL
RHCIDVMHTEKNFLDNIMNTLMSVKGKSKDNIMARMDIERFCSRPDLHIDSKGKAPFPAYTLTNEAKMSLLQCVKHAIKF
PDGYSSDLSSCVDMENGKLSELLDRNVHLALSGVGAFFRDLCSRTLQKSRVQILKQNIVLIICNLEKIFPPSFFDVMEHL
PIHLPYEAELGGPVQYRWMYPFERFFKKLKGKAKNKRYAAGSIVESYINDEISYFSEHYFADNIQTKSRLTRFNEGEVPV
YHVPGVPTIFSSVGRPSGEIREVWLSEEDYQCAHGYVIRNCDYFQVIESMFEDFLSIKYPGLNEKELFVKRNEEYHVWVT
YWNSSNPFPTWVQEIVNGPLHKVKTWPMYFTRGYLFHTQSHGAGRKTCNYGVCVKGENYTDASDAADFYGNLTDIIELEY
EGVVSLKITLFKCSWYDPKLGRGTRRSNSGVVDVLSSRKYNKYEPFILGTYENDDAVLITTIEDLVLDNLTINRNPINLD
LDAGDADPEDEFRSERSPQLQTPASEDAGPPLQATAAHVRNYPPPLQLFQHSGSRQPEVQRSASVEVQNNPANQAATTQQ
VPPAPQQDPPPSQQDPPPSAVQESRAHSHPSSQGNNFEEYPPLSPDLQEDTLQSLNDLLMLPERDKYFLPYXTACFSCVW
RFTRDTNSRLVRNITRVFTNKFDGPYYSWTCVPQERQEKYFLEFAKTHHWDPLITGTVQFYFNEICLRRMKGMVSTVRTS
RKKPKWIGKTLWKEMTAYWDTEEAQERSQIYSNARMSDRNGLGPHIHFSGSKSYHQIRDELEDQLGKTVSIGDVFIKTHT
KPDGTYVDRKAEKIAELYQKNLQLRQSELEAEASAVSDGTSRVRELTAEECTTIFLQSTERDSRGVPYGVGSLKESLVNG
KRKQAGDSTSFVALQEQLLEAQRKIEEQVSYNQRRESEIALREAENSRAADEQKKKLEHLSLVEKFLRENDPRFLNFLES
HSAKETTTDPISPSPAASPSSSAS
>EnSpm1_TD#DNA/CMC-EnSpm 7117-10465 via genewise with EnSpm-10_ZM_p1 and PRL (1 frameshift, 3 introns) [Triticum turgidum subsp. durum]
MADNQWMYSGFIRRNRVTSEWIAKTDVYLKEIFRRPMRIIPPCPCARCARRHRRNQTDMSEHLRTHGYMPNFDMPPINIA
EQDHGREEVMRQRINRYEDDGVRDMLDACHXADSANATPSENEPEDPEATAKAFLEVLASSKKPLYAGAKISQLDAISQL
IAVKAEYGCSQKCFEAFLGVWANSLPEGHELPKSMYDTKKIMKALSMDYEKIDVCPKNCFLFRHEYADDKYCRKCGSSWY
IEVVGEDGEKKQLTIPVKVLRYLDFIKRLQRLFITKESAKMMKWHKEGIRYNPKKIIHPSGGEAWKSFDEEYPEEAAEAG
NVRIAISGEGLNPYGMSSNPYSCWPVFVIPLNLPPGALMQRKTMFLSLIIPGPDYPGKQLGVFMQPLVDALHHSWHFPRL
TYDRDLQRNFLMKVWLHYCMHDFHGYALFCGWCTSGKMPCPVCMQALRMIWLSKGGKYVAFDLHRQFLPPDHPDREDKKN
FMKGRVVHEVTEIPTFSGADVLAQLKALKPKVKGKGKAKAKGFEGYGETHNWTHITPFSELPYFKDLKLPYNIDVMHTEK
NVAESLFHTILNIPDKRRXYVKARADQQRICDRPRLNMKPPTGGRKNWFKPDADFVLKXARKKEVLIWLKQILKFTDGYA
SNISKGVNLSTGKVTGVKSHDYHVWIERIMPVMVRGYVPEHVWRVLAELSHFFCMLCAKEVSKEVIEKLHKKAPELIVKL
EKIFPPGFFTPMTHLILHLANEVLLGGPVQNRWQYGPERQNKHLRRKCGNKAKIKASIAEAVILEEVSDLRTSYYPDHVP
HLHNKVPRYNIEEPKYQPRLDLFNAQGRRAGASKSYNMPRQEWEHLMFYILHNIKEVEEVWMSDFVQEEWTGVNPPTEAE
ALTLLRHGNPGRKNFVAWFMDKVIFHTPLLNTYFNIYXWVSMGFDPAVMTCKKYDVNGYRFHTEEHQNSRPDPKTINTRV
YTXGQNSVDYYGRVQNIYEVKFRQGRETLSLPVFKCRWFDPREGVKHTPSIGLVEVKPSTVYAGADLFIAATQATQVYYL
PYPCQKVYLKGWEVVFKVSP
>EnSpm2_SB_p2#DNA/CMC-EnSpm 8026-10628 via genewise with SPMLIKE, 1 intron (9453:9589) [Sorghum bicolor]
RGPKKPLEGRYVISEFEIATGRPLGEHANKYVSHCGYLVRDQIPISAREWREKRGAPEISFVSDRDKELVWKAVTDVFTF
DTNDEELKVRIYDWTMKKMAVLFQNWKKSLYNKYVKKNETPNFNLKQYVKLRAFWDDFVQYKTSEEGEERANRNKENASK
KTYHHHMGSGGYKSAVPKWDRMEQEMLARGVTPETIAKNWSERSKHWFYGHGGSVDPDTGALVWGQEISRAAERLVRARE
AVQSGEFRPNREKDELTYALENPEHGGRTRGYGAVPWLQSFQADQDTYRSRQRKKDEEAERIRRLEAFVLQSQEREKARE
EWMQAEIQRQVQAALSQMTKGQGTSQPEVNVSPPGQLKSSCASTEVPTIQDDTKLHFPVDDVTEAFTTCELHVPDGNxTK
KVAIAVVNPIDRTRTPRIHNRPVPGGYASVSVDRVEKGCGNVPLDIEGGDGEKTLGEAEKTFICWRKRFIIIPQHSAAGG
DNAGSPPTPAAATPTPPPPPPRSPPPPPRSPTPPPRSPTPKRSAPPPPPPAPPSPKSARSVPSPPKRGSKKRSAQEGPKS
SVPPPKKAASAKRAKTPEKLPYEKSEEEVIATSKAEVQQFFDKIKEDRKKRLNPEKPYFYVKPSELRQKVADHQKKQREA
QKKPALSDYERSLVKSSQPTKKRVGKGVPQLGEVSKPVPPLIVPNQYGSNEDLMPKKSLALSELDSLERYFGQSGLNMEE
IAAILGCQTFEKAEVVDQWRARYEPGRSLFDPKRLHELGTQMFAINKWCIEASKRGENWISVRIRQHHYFRGDDLIYVQF
EELHQLCHLDALDKSLVSCFCL
>EnSpm2_SB_p1#DNA/CMC-EnSpm 1333-4740 [Sorghum bicolor]
MVFIIYMLYLMQMVTRNWMYNADRRSEEFINGVHYFLSVAESNKRDGFMCCPCAVCKNLTEYSNSRTLHSHLLKSGFVPN
YICWTKHGESGIIMDEGEEEEEEELDHANIIAQYGGFNDVAMGGDNEEEVAAEDDRGDDAFGDAIRDAQRECESDKEKAK
FERMLEDHRKSLYPTAEEGQKKLGTTLELLQWKAKNGTSDKAFGQLLKIIKKMLPKGNELPTTTYEAKQVVCPLGLEIQK
IHACPNDCILYRGEEYENLDACPVCKASRYKIRRDDPGDVEGEERHRKKIPAKVMWYAPIIPRLKRLFRNKDNAKLLRWH
KEDRKIDNMLRHPADGSQWRAIDREFPDFADDARNLRFALSTDGMNPFGEQSSSHSTWPVTLCIYNLPPWLCMKRKFIMM
PVLIQGPKQPGNDIDVYLRPLVEELQLLWSKPGVRVWDEYKQEHFDLRALLFVTINDWPALSNLSGQSNKGYNACTHCYE
DLDCVFLKKCRKVVYLGHRRFLPVNHPVRKKGKHFKGKADHRTKPLNRTGDDVLEMVKDIKVVFGKGRGSEPIPKDAKGH
VPMWKKKSIFWELPYWNVLEVRNAIDVMHLTKNLCVNLLGFMGVYGKSKDSLEARQDLQRMKERDNLHPEKTDDGRHYLS
PASYTLSKEEKESMFECLSSIKVPSGFSSNIKGIINVPEKKFLNLKSHDCHVLMTQLLPVVLRGILPPHVRLATVKLCAF
LNAISQKAINPEQLATLQNDVVQCLVSFELVFPPSFFDIMTHLLVHLVKEIRILGPVFLHNMFPFERFMGVLKKYVHSRS
RPEGSIAKGYGTEEVIEFCVDFIPDLDPIGIPESRHEGRLSGKGTLGKKTYIGTGDDYFNKAHYTVLQNSSLVEPYVEVH
KDFLRSQWPGKNEAWIMRQHMETFGDWLRKKCQGDENIDEQLYLLARQPSWHVLTYKGYEINGNTFYTVGQDKRSTNQNS
GVRVDATDPNGNRQTYYGRIEDIWELVYAANFKVPLFRCQWVKMTGGGVTVDKEYGMTTVDLNNSGFKDEPFVLAADVSQ
VFYVKDMSTKPKRGKNDDHSIINEPKRHIVLSGKRNIVGIEDKSDMSGDYERDDRIPPFIVNKDPSILLNNEDTPWLRQD
HNQGSYVKKKFTVVSA
>EnSpm7_OS_p1#DNA/CMC-EnSpm 1006-4458 [Oryza sativa]
MADRAWMNKERYRASYIEGVDIFMKAAKKNAASKKTKDIRCPCVHCKNQKSWNDPSVIEQHLVTHGFVEGYTNWSHHGEI
PSKQVPNQATVRDEVLSWDEDVIVVAEEEEEEEVHAVEPVDDDDVVGGNGQHSTVDDADDGNVSVDDGNFADLEEMLRHA
EPEVVAGSARGLDNFDALKKAANDLLYDEAKGCEKDFTLLRTVLELMRLKARNGWSDSSFNDLLVLLKKLFPQPNSLPTS
TYEAKKLICPLSLGVRKIHACVNHCILFRKEYEDLDRCPTCKSSRYKTSRSQSEGLDVALDDVEESDPCKDSNKKKIPQL
VMWYLPVKDRLKRLFSNPRDAELMRWHHEKRKKDGMIRHPADARQWKEFDRKYHKFAEDPRNVRFALSTDGMNPFGDLSS
SHSTWPVLLTMYNLPTWLCQKRKYILLTILVQGPRQPGNDMDVFLEPLLEDMRDLWEHGIRVWDEFLREYFTLHAIIFVT
VNDLPALFSLLGQIKGKTGCVICVDGTVYRYLKGSKKLVYMRHRRFLRKNHSYRSQAEYFDGTVEKGVAPEPWKGDKVFR
MTKNLKVVFGKVKKKETNKRKRNDAEVPASPSVPFKKHSIFFKYLPYWKDLDIRHSIDVMHLEKNVFDSTIGTILDIPTK
TKDGLKSRKDLVDMQIRKELHPVDEGNNGKVYLPPACYTLTREEKMALCKSLHGVRVPTGFSSNIKRLVSMKDLSLSGYN
SHDCHVMLTVFLAIAIRAVEPVHVKLVITKLCYFFNSISQKVIDPEELGPLRAFAIQTVCELEMCFPPSFFDMMQHLIVH
IVPQIIALGPLYLHQMWPFERYMSILKGYVRNRAHPEGSMIEGYTTEEVVECCIDYLKDGKAIGLPVPRHEGRLSGKGTK
GKKRIHDNDYKKVKDAHFTVLQQLAIVEPYIEQHLHELQATNVGRSNRWIMKKHKHHFTEWFKNLDLPDGHTMEERTIKM
LADGPSSVYTSWQAYDLNGYTFYTKAKDKRSACQNSGVRVEAIDTTGQKSTYYGFIEEICELDYGPNMQIPLFRCQWVKH
PAGVSVDNFGLTIVDFDNVGHKDDPWVLADRVAQVFYVTDPSHLKKDIVISGKQRILGVDDVEDVEAYNQYENMTLFTDF
RNKILRVEESIGESPKPYMRNEGVGKSVRC
>EnSpm-3_Mad#DNA/CMC-EnSpm 1-2301 Probably a fragment. [Malus x domestica]
MNKEWVHLNRTTNEYLIGRRAFISNALDVAAFQGKIKCPCRSCCNMFYRDPFEVDQHLYVEGMDPHYIDIPWVEHGEQVH
TSDNISSQTTEALNERSPENFMAAMLHDVFSNHVHMDESDHVGESSSACDETTDAHQFDNILREADGELYPGSRKKRLDF
VVKLYQSKLLYGMSDAAFGSVLALIREHFPMCETLPPNLYYTKKIIRALGLDYHNIDACRNNCMLFWKEHVNAIVCAKCG
ASRYKQRKGNSGTIQCTKVPKKVLRYFPIGPRLQRLYMSRYTAESMIWHSEIRTDDGVLRHPADSSAWKHLDNTYPDFAR
ECRNVRLGLASDGFNPFGMHGKPHSTWPVLVVVYNLPPWMCMKQPYIMMSLLIPGKTSPGDAIDVFLQPLIDDLRHLWMT
GLRTYDSHRQETFTMRAALLWTINDFPAYAMLSGWSTSGEKACPTCGDDTDSLRLKHGKKFAFMGHRRWLPMSHRYRRHK
KTFNGSQEFRNPPKPRSAMDCLLEVTGLTFRFGKGARASGRKRGWNDDGHVVGQWTKKTIFFELPYWKDLLLRHNLDVMH
IERNVAENVIGTLLEIEGKTKDGIRARADLVELGIRHDLHPRADGARTKLPAAEYNMKPGEKRMLCQVLESIRVPDNYSS
NISNCVNIQEKKLIGLKSHDYHMLMQVFLPIAIRKVLPKSVVTVLLELSRFFRHLCSKTGTEELFNGLSKSIALTLCHLE
KLFPPSFFTVMVHLIIHLADEAAVAGPVPYRWMYPIERCQFRKTPPQ
>EnSpm-3_HV_p2#DNA/CMC-EnSpm 7674-10064 (may have more exons) [Hordeum vulgare]
MSHFNLPECENEDAADKLRAKVKQWTLKKMAELFRSWKKKLWKNYLKTKKVPVFEGYLAKQANHWKEFQEYKESEDAQAL
SEKNKINADKKKYHHKLGPGGYETAIPKWDKKEQDLLDKGIVPEPLRDEWELRARNWFLAHGGSYDEKTGDLICSDGLRI
PRENWKRIVKEIKEGKRKFTADREKDLLTLVLGNDEYGGRTRGFGPSYPWWLGFARDQDTYRSRERAKKRQQDEENDKFN
QLLARINEQQKQIDELRGVARQEDPALDITGAPSKRKSSVAESEAPPDDARRMIEGGPGYPVDGIKESTSCELHQKFKNI
SMKVAVGQALPSGPDARWHGREIPAGFAKVGVDEIMTVFHDMELDIAGPEDERTLGEVLGGVILWDKNYIKLPGSAPRTT
PPPSRRRSPTPPLPPSPPHDVGQHSTSPSRSPPPDLGRPSPPPPAPDTKPEPATDTKRERATKNAPPPPAPDTKPEPATD
TKRERATKNAPPPPLRIQGQHNTSPSRSPPPDLGHPSPPPPAPDTKRERATKNAPPTIPKRRSPPKRKRSPLPKVRHANL
PIRPYDRTPEENARIAKEHHDAQMKKKEPEPRPEYTEKQIAFAKYFTTLPSQYDLHHKPDDYTRTLQKEVKKSRSRASAS
GSKSSSTTSKKKSDVPQLGQQAKQSIPPLKVLTENVPPTVQGQAFEIAKEWAAECGVSVEDLLASQDDRIPKAVVAPKPQ
FVMGEPLVSKDDLPTNMRYLHQWYLSESKNGRTMIVVSVPREYYGRPEQIHIDFDELFQMYNGDALDKSLMSCYCL
>EnSpm-4_HV_p1#DNA/CMC-EnSpm 1254-4730 (EnSpm2_TM coding region very similar and broken up) [Hordeum vulgare]
MNFMYELVLIWSIRCCVMKMSRQWMYDDRCSPQFVEGVHTFLLAAEANKRADGFMPCPCARCKNGHNYSTSRTIHVHLFK
SGFMPHYNVWTKHGERGVMMEDNEEEEDDDSYPGHGFPEYDDTTMGEEAEPVMREEAEPAMREEAEEEASDEPVDDLGRA
IADAKRNCASDLEKKKLQRMLEDHKKLLYPNCVGDKKKLGTTLELLQWKAENGVSDKGFGKLLVMIKDMLPKDNELPEST
YEAKKVVCPLGLEVQKIHACPNDCILYRGEYEDLNACPVCGALRYKISRDDPGDVEGRRPRKKIPAKVMWYAPIIPRLKR
LFQNKEHAKAMRWHREDRKKDGKLRVPADGSQWRKIERKYGKEFADDARSVWFGLSADGINPFGEQSSNHSTWPVTLCLY
NLPPWLCMKRKFIMMPVLIQGPKQPGNDIDVYLRPLVEELLQLWNGTGVRAWDEHMGEEFDLKALLFVTINDWPALSNLS
GQTNKGYRACTHCLDDTDSIYLANCKKNVYLGHRRFLPSRHPVRKKGKHFKGEADHRTKPRHRTGADVHDMVKDLKVVFG
KGPGGQPVPNDADGRAPMWKKKSIFWDLPYWKDLEVRSAIDVMHVTKNLCVTLLGFLGVYGKTKDTPEAREDQQCMHGKD
GIHQGHASYALTKEEKEIFFECLLSIKVPSGFSSNIKGIINMTEKKFQNLKSHDCHVIMTQLLPVALRGLLPENVRLAIV
KLCAFLNAISQKVIDPEIIPRLQNDLVQCLVSFELVFPPSFFNIMTHVLVHLCEEINVLGPVFLHNMFPFERFMGVLKKY
VHNRARPEGSISKGRQNEEVIEFCIDFIPDLKPIGVPESRHKGRLDGKGTLGGEQIICMDGHSLTEAHYTVLQNSALVAP
YMDEHKNLLRSKHPERSDDWITREQTRSFASWLQARTMHDTSIEDDLYLLSQLPSSNIMTFKGYEINGNTFYTIAQDKKS
TNQNSGVRFDAETKTGKETYYGYIQDIWELDYRRGLKVPLFRCKWVNMTRGGVTEDPQYGMTTVDLNNLAYADEPFVLAN
DVAQVFYVKDMSTKPRKRKDKEANASYDEPKWHIVLSGKRNIVGVDDKTDKSEDYEKFDEISPFTVNIDPSIPLNDEDFP
WLRRKGTHQEKVSHPKIWDVIGLLSSLSSVFHTQRESL
>EnSpm-9_OS_p1#DNA/CMC-EnSpm 1527-3725 (may have more exons) [Oryza sativa]
MTSREWMYSGWTRGKAPTNEWIDNTTQFLNRAFSMQEVVKDGTIKCPCAQCRNYFRHKRDTIELHLCKYGYKENYGIWTS
HGERPVINDNDPGPSLIDHEGFGESDRMDNMLVDLASAQPPESSEEPAHYAKAFYRMVASADELIHENTTHSCLSAVARL
LAMKSQYNMSVAHYDDVLGIIHEFLPPESKLAKDFYRSKKLLEGLGMPYVKIDVCYNNCMLYYKEDEHKEKCDFCGTSRY
ENGQNKTPRKVLRYLPIKDRLQRLYAHEEIARLLQSHSRSQSGNMVHPCDGEAWQQFDEDFQDFAQDPRNVRLALATDGF
TPYSLGAAPYSCWPVFITPLNFPPGVCMRPEYTFLTLVIPGPEHPGKKLSVLMQPLVDELLKLWEGVETWDASRKQNFTM
RAIFLWSIHDFPAYGIFAGWSTHGRLACPICMGDSQSFQLRNGRKPCWFDCHRRFLPNEHEFRTQLNAFRKNTFMLDEPP
RILTGEEIKEEMYACVDDTENFGKTHHWTHISCFWQLPYFDKLKLRHNIDLMHNEKNVAESIWNTCFDIQDKTKDNVKAR
KDLAEICSRPLLQLVSKGNGKWHKPRASFCIDRNDKTTILKWFQELKFPDGYAANIRRGVNLLQRKIFGLKSHDYHVFME
RLLPVAFRGFIPESVWKCLAELSFFYRQLCAKELNKDTIRSLEENVAVLICKLEKIFPPGFFNPMQHLIIHLPYEARLGG
PVQFRWNYPYER
>EnSpm-4_PGr#DNA/CMC-EnSpm 1863-4280 [Puccinia graminis]
MHSMWPGVIVANVLPQRDAATAPAGAGVAESALFLEEDFCMQVMIQMTKSVFNGKMSKDAAKSFLLSARQNVXLLANIWG
SLHGITIDATRMIEQIPINSGAVIHRLGLKPELTSRVCCPKCFALYPLDVVDTICTERFLSKYRTFEKWTQSQDKVPKCD
QDLWRTNSQGQKKPVRTFNYVTLEAWLKNRLLNQKFETLLDSSLAAVNHTSEMAMEDVWHGSVWQEFPNNDRGEGIFTRS
SGNLVFSLYLDWFNAGGTSNLGKKNSLGAITLVCLNLPPTERYKVENIYLFGIIPGPKEPSLEQVNHLLRPLVQELQMFW
STGCFFKSTSAHPNGRTIRVAVFPLIADLPALRKAAGFGGHQATLFCSFCLLDQKNIEETDKSKFPLRTHEEHLAHATEW
LNTDSRTDRDGLVKKHGARWSVLNDLKYWRPIEYSSIELMHALALGDLKDHSMRYFALPTAGEELEKKKTKDEAWQNDQS
YTEPPYTDTYGPKKKEYVTMGKGKRKRDSNLPISPTEKPNKRRRVPTNKSPTPRSSAEEPGSSSNSSANTDSNVSNSDDC
SRSSTHSYKLRVRKQMLYDMSEQESIGSDGESCASDKTARQQRKGKMRDQEAEKSDRGIRLTAEELDVVRRTIMHTTVPS
WMDRVPRNLGAANHGSLKAAEWLILYKVYYTISLIPLWTKPNTGLETQEERSRTSALLRSTTLLCQVTQFLTLPVIKKKD
LDEFDDLLQNYRKCLQENWPEEPSRPNLHLTQHYPEVIRRLGPPRSTAAWAQERVNGILQKLPTNHHPGMFLTLYLLEEC
VTMLNK
>EnSpm-3_HM_p1#DNA/CMC-EnSpm 253-2830 via tfasty with EnSpm-2_DR_p1, 1 frameshift  [Hydra magnipapillata]
MFLCYLCNKGYNSISELRVHLQRHKDNRQLSIPIYCRQDKCISSFSVLFNFIRHLNTYHQINTERVSEAAAFIEENPENL
FLCDNYAPCINQLKDSSPNLDVVSSVNSLDFLQDVKDEGASLVTQLRANSSIPYGIIPTIVQSYNNMAGSLSSYFKEEFN
KSLLLAGIDCAVIDQISQEMQPKLELCNNPLDFLSTRYRIDSYFAGHPLMVQPESICYMPRLESHCGHSKFVYDQFQYVS
IEKTIFNLLQNEAYVKAFLEKKCRPGVSTDFSDGSRFKEHYLFSDVSKISLMIQLFYDGLGVTNPLRSQGSVHNVGVFYY
TIKNLPHAFNSCFGNVHLLAIGYTHDIAVYGHGPILNKFVNEIQELSTIGLQGVFPVLGTRTIYASLCQVTCDNLALNGL
LGFIESFSGRRFCTICYATKEDIQIKFEDDLFEMRTVHSYKTDLINLVASRTSNKNNSNQLKNHYRGVKTECPLNKIKGF
HVTDNWCLDIMHTLLEGVVLVELGCILHGLCVLDKCLTLSDINKAISLLWGKITIEKTHKPAEIFKIQEPGHVLTPSMKA
VQWWALLKYLPMAVGKIVPLKNKNWKFLLHLSHLVDLIFAPSFTHEMIVYMKHVISDHLSMFSKLYCSDEVRLRPKHHFL
VHLPNIIIKSGPLVGMSCMRYELKNSFFKRCAHIVCNFTNICRTLAHRHQRQALESQLSNKHIRKIITVVKYSIESTYSL
PFYNAMQNILCFKSCEEIAIAKTLHAGSVEYKQGHFIAINIDMETGLPNFGKIVCFVSSANNNQVDVYKGEKWHFVLEIV
KTNNFTYHLHSYEVIFLCQPEYQIFKLSNFVDYHPLYCHSLLATTEKKNFVRLPYHVF
>EnSpm-1_AP#DNA/CMC-EnSpm 11-2002 via tfasty with EnSpm-6_DR, 1 stopcodon. [Acyrthosiphon pisum]
MEIDVSSNLPTYTQSIDISEHPDIHEHDNSSSNYFDNNSxNLSDSSFGYSDRSPDGSLPDHESSQKLLNLGNDDHNNILA
EPSFREKLQNWAVKHRSNLTVEMIEDLLGILRAENIPDLPKSATTLLQTKSNTNIKSMNSLKNTTGFYMYLGIEQGLKDI
ITDEYSENSIRLLFNIDGLPLFNGSNQQFWPILGLILHNDYESQPFIVAVYSGDSKPQNIDNYLEDYVKEAKSLIQNGVT
IGQRTFRVEIVGFSCDTPARSFIKKCKGHGGFYACERCETRGKTINKKRVYPSMTSKLRTKSSFIMKSQNEHHLGAGRSP
LLDIPDFDPVKSIFLDSMHLLYLGVMKWIMQQLLGTKKVNRKCKLPVQDVNYLNLKLKIFVKYNIPKEFQRKKFDLEDFS
HWKATQFRFFLHYCGSLVLHNILPKKMYKHFLLLVVACRILCDPELCIDNVGYARQLLRKFFELLPSFYGSDSQVMNRHN
LIHLADDVEHTKMHLSAISAFPFENYLGKIKRLIGGGSNPLAQLARRISEQKACPEMVKKSAIKKKKFLIINSDMHEDEV
NLEDIIFRGVTLSIKKPDNIVKMDSGHIIQITRIRKKQHSMFLHGYIFKNVTDVFKYPCKSTKIGIMKLGRLSETEKKFS
IDNILKKCVFFENDSKSYAIT
>EnSpm7_OS_p2#DNA/CMC-EnSpm 6955-9086 via tfasty with EnSpm5_OS_p2, 1 frameshift. [Oryza sativa]
RRSKRKAQAATEPEAEATAVVRTTALSKPKKRRGERGKNMLLKEVSVLTRMSEIGEPLSPEDSCSKYSNQCGAVVRDIVE
ITWKDWKKVPESRKNSCWTSLQSKFEYPEGTDDDKAKDYALKTMGKLWRNWKTDLNKKYVQKGLTPFKDYGRITQAQWDE
FVALKTSAEEKEKSQKMAELARRNEYPHHLGSTGYRQAVKKWAKQDEEMEKAGKPVPMKNHNPRSRNWVRARTPAFTPEG
DVVFKDQKLQEVAVKMKNIVTQQQAGTFVPDRDRDELTYALGKPEHSGRVQGVSSKTNWKDGFKQDAHTYKKRDRYKEEI
DSQARAAARDECNIYWSQKMMHGAAVLEPEPSYPFDDVTEDTPCKLLIPVGRAGKKILVATGRFIPGRRFHCQDIPDDYA
KVEVRTVIEAYRMHELDFPTTEQIVYLGDAVDQFILWHKNDIELGSTDGTDRPPRIPVSPSRPPVVASPRDSPIASPPRP
EPPVASPPGPEPPVASPPVPEPPVASPPVPEPPVASPQTEKDAEEPSEPVQAEPTKLAAGEIEAVPDQPMPDQPEQSQPE
EPKGADVPVMVRTHKHKAKSASKKHYMVTAFRGRDKDIINAEFDNRKLKGFKQTFDDYLNYINSPDVPHEFENGKPFIYD
WQLREGPWQLRRWHDWYIRASTMKGIDSFTVAVGENIFWSGPCLLQVHFSDMHSLYRRKRLDANLIAIWCL
>EnSpm-1_HM#DNA/CMC-EnSpm 1635-2675 via tfasty with EnSpm-2_HM_p1, 1 stopcodon (fragment)  [Hydra magnipapillata]
IKTKKNLRRFFLIxKDVHQSLVDLFSLIDSIKLPHFFRRKPKNLNNELVKWKAQEHKYFLLYYGPFVFYKLGNAEICSLY
LMLSTSIYTLSNEIVSSNDIDACQQLIYLFQKALCSYFGEGIRTFTFHALAHLSDQVKNFGPLTATSAMVFENVNRQLKR
SVTGTKGHGRQMAEKFIRFQTEDHLNTFSLNPFVLGAAQNISDKLRNMDLNDLNVDLNLYQFYNRFRVADRTFHAYHYGK
KLKSASYYAYLIEFNVIVKILFIAHNQRQILCICRLYKNVSKFHRHMDSFNIPIKIKHVLSKISPYLLLKKCGLAVFDSS
KFTHYALVKKTKKFYYSVVIQNNYEHD
>EnSpm-2_ADi#DNA/CMC-EnSpm 1175-6428 via genewise with EnSpm-1_ADi, 5 introns (1563:1584, 2070:2364, 2590:3315, 4319:4521, 4726:4908) [Acropora digitifera]
MANFFGCGFARVAVKLSILKGNGKVEYDHEQRWKKYSKTFQGVHKSRFEVDKNLYTKRSKALELHFKRWKTTPKKSYIEH
FSQTNWEKLTEHEKKQHSRANCKACDVHHFSYQSLFPLWGNKTSTVTQKVFPNKLTVESLNSHAAGNVKITKKALKSVTK
EVYDKINVTFEKTFGVSFAMAQTSVPELNVQVKKSRTELKKEKRNQSRAYKKQIEQQWTENACDAMLATRQTYKQRNEQR
MIFCFETPEEAETRARKRKLLEEKGQRKKKRHSPSPKDLEFNKSELLQEVNAMKDGEKVSKQPKISFNSNNSNxIKLSxK
TIIIIMWAIFTWxGKQLSNMEGNTQPKINIVTRKRSxLLIPPWSGISYYFVKKFLHVSIIMxQTDNVLIDNMNxLSDQLS
ELARKYGIAEKTKNGNMVVKEFLEDKGVQLSxFKQFRVNKAAARRTLKGLQGGEISVPTQPTNNQIRKTLMVSLGAANAN
QTDVNNMRDHLxLSMKRIPTLFFLVLNKSLFPLLLRTTKLSSYNCMADNNCYYTFSSLTLFxLAESLQxIFEISSRDVKL
TCRLYNNHVKLTQGHGxSCHVxPQCIISKGNHVKFAIxMFTRxQINYQFTHCHDHFLFVECIINNNYxIRLRPITPTSTL
IILDITKTSSNNCLxLKKITVINIIILLQISVIIIVNLIFFSYNLCHGKYSRKxLIMMDTCxLICFLITxLLQSKVESGE
YVLGEMIVPQTFKKVMLTKEGHLKTETFTVSGRKIPLREIRKRMLKEHESLGIMRIWKDEIYDAMTADELSSRLVQLGEE
SGEETPSEMRERLKGMERKRHLMVWGDNSTLLNHGHLLLTISAIYDEAIYYTNEEMKTKGKENIDVQSLVERPHVYILGR
CGASEVEQLAYIKTRKACLQSLSEPVLTSNGVQIIDIMRFFHGDGPQQEFEAGEQKGGNAGCASCSGDARKYKDLAVSLR
RPHLGLSERLKKVLQGPAGKNRRNGGLKPFKDLHKEELKRECTARGLSCDGSKKELQEIFKEDIGGIQRVPAMIFFDQEK
TMADLGLALEFTTFPPSYFITRRLSFTECYMDISTxSYERCTLKHxPTTKHLNNIIIHNYIVFSQIHSLYFFPIIGNYEV
LPTEPLHDIKEHIANVLTELPSHLDNEEKNAFQDIIECSLGGKEKLRGCDYRLAAVIVAQYLRGNENKIIKTITITQYNH
NILKGEGTGKTYLLxLWRFVILRFHCSNxSEVEINRVxxIYFFLGKVGPKIQTLLDSLTELSKLLYLPANLRSPKLVLRL
HNQAFLHAMILKEVIGSPKSLTERKLYGRYWHSITVHAARQSRIISLKSTNTEEEERHFNTLQGVTKLTNRRPDDIITPS
LVRLQAEQKLAESKSATNPVKIQESQISKYYSTLPPFPNTIIPNRYIIRNPKEYQAHLESISDFIACGEGEWWHQVLSGV
EFYDGPDEANNRPRGPTLHHFRSSTLQLEEQHLKENWHRCLSDDNITIPHRIIRIYNQRGDCTRVIHTNFLETENDDNSL
QVQEERENEAAEDPMTHFLEMEDDENTVEVTGLEEITMPEAEGLLVECSDDENDDEELQPLKTSISLSPEISESSSRHNQ
DKNVTGSEETERCSPETSQQSEKSLASDRGNSPQQKEIITKLCKNVARIVGETDCVLELDSARQKMKENPASDFYHNNYQ
NRLAPVQTQILAHHTALEKQHKEWEKQHYHDHNCSEPSLEDLKRDKEQYSRYKNLILCKELLKHWEITVHL
>EnSpm-1_NGr#DNA/CMC-EnSpm 250-3723 [Naegleria gruberi]
MRNFQLSFFSWLLKIKFAQIILIFSRTVRKKLGKKMCKLSSRSTQLIDKGTVCVCCQTTHNKKRWYRAFLLNKTGRNLAS
KELKKHIHQGFCCNRVFQWLKRKYVALCIDKIKKVKNYKIRKEELQHIETVPFETLIASRKNQTYSIIAHDDNQRSVLVL
KRKADKVTSKKNQLKILGAKCIPLNSLIVNASPSDTMELMAKKKDLQDTVKDAKWFKSNSKIQKKRIIKQVNATIRKRKQ
LMAPLQTFGTNTPLSTAKLMNIINSKQTNKERISNTYLKNPLSRIRACFHDPIFEKYVCDMINNSSVSMKILATNILAEL
KAKSNDILNKINPEMYDKILKSFENQQKHSLNTDIPTILKYLYIDHYLNNEMDLQQICDMVDKVGGSLLVEKEGKWQEVA
RTLKITQKFGDEICRFGYFLQIGEKPPIRCFQRRNVKLDDDIYMPFFDEKEMKEDLQAWCIGQEIETDIDESVLYSVDEW
CEAFKKNPLAVYIGNPIKVPINLNGKEIMVNGVMRNIIPVLIHHLLKCDQNGFIKQVADLVIGYKLIDWMDGTAMLNQSL
TKVSIQLLWDEKLFNKEGYDYVTKPLPLTYVWCSETKYNVKTISQLLRDQYTQLVDFKMPLHEKTATFKLKFMSADYSNA
SKRWNHKVGGDYRCSKCPLPFTGNQWDYEQCLSCLNNGKSLQNLYATKKFPDGQVGLPHLVNDGKSTSLKERGLDEYENG
SEILHVTKGIGAGMFSLFQKEKDFQEEKCYAALDENIRLNAKSSTMSNGDWRLVFCKYDVCVLPFVNQERENAELLMLYW
RDILRFLYSKNEHSNIENQQFCVKVFVFGTLAVMRWGNNVVGLHFHDLWVHISLLVWKVNVYHLSAEKSEQAFSKEKRIA
KNNTNHKTESAIVEIIRRSVLSEVVKQNYSNRSCVKSNVEKALKDIPIVPSVIPKAIMEHPKYSKWLSLFESKILAPNYP
NFLKYDCKGHIMHGDNSELSVEFERLLEKCVITVTALRGKSKCPFCKKTEVISIDCLSGSCFACCEDSGCVFHTKIAEKL
EKNKKKNKSNVPIINNSQANASQDSGNTMQLSNNTEFNPTTVNSIVNSEKKVQCVNDGCTLIKVSINCSNKMCSKCCKNV
GEKLCKQHKITNQRRKSVSEQVIIQQQTVSFTSGSLTK
>O68709_YERPE/1-80 transposon family T8 Pfam:PF01527
MKKTRYTEEQIAFALKQAETGTRVEEVCRKMGISEATFYNWKKKFGGMGVTELRRLRQLEDENQRLKRLVADLSLDKEML
>YIA3_RHISP/1-80 transposon family T8 Pfam:PF01527
MKRSRFTEEQIIGILREQEAGVATAEVCRRHGVSSATFYKWKAKFGGLDVSEARRLKALEDENARLKRMLADAMLDNVAL
>O68055_RHOCA/1-80 transposon family T8 Pfam:PF01527
MRKRRFTEAQIIGMIKEQEAGLPTSELCRKHGLSPATFYKLKAKYGGMDLSDAKQLTQFEEENAKLKRLVADVMLDRASV
>Q52597_9RHIZ/12-108 transposon family T8 Pfam:PF01527
VERRRRWSREDKEGLVAACLEPDAVISEIARAAGIHVSQLFRWRKELCRIEEPRSDTAALVPVIVSEAASTVSPAQPEPP
TKFHPRRKRSDVTIELG
>Q52849_RHILE/18-103 transposon family T8 Pfam:PF01527
LDRRRDWSDEEKVRIVEESLQGFRQGSVTARRYGLSRSLLTRWRWEYRSGLLSSSATTGFVPLTISPSAAASCEVASRLR
FEDDMT
>O06945_SALEN/1-80 transposon family T8 Pfam:PF01527
MRKARFTEHQIITVIKSVEAGRTVKDVCREAGISEATYYNWKSRYGGMEPSDIKKIKDLEDENRRLKQMFADLSLENRAL
>Q16925_ANOAL/69-141 transposon family T5 Pfam:PF01498
RRAIKRLVDAEPEISAQSVAIVLNERHGIAISCETVRRYIHKFGYKAYNRRKKPQISPINRKRRLEFAKKYVN
>Q899Z6_CLOTE/276-341 transposon family T35 Pfam:PF07282
FYRLAQYIEYKALLEGIKIEYVNPCNTSKQCPICGKLNTAKDRKYQCSCGYKAHRDLNACINIINA
>Q56811_XANCA/1-969 transposon family T7 Pfam:PF01526
MPVSFLSTTQRERYGRYPDTLSSEELARYFHLDDDDREWIATKRRDSSRLGYALQLTTARFLGTFLEDPTAVPSPVLHTL
SSQLGIADPSDCVIDYRTTRQRWQHTSEIRTRYGYREFTGTGVQFRLGRWLCALCWTGTDRPSALFDYANGWLVGHKVLL
PGVTLLERFIAEIRSRMESRLWRLLVHGVTPEQRQRLDDLLKLVEGSRQSWLDRLRKGPVRVSAPALVAALLRIETVRGL
GIKLPGTHVPPSRIAALARFASTAKVSAVARLPEVRRIATLVAFVHCLEASAQDDAIDVLDLLLRELFTKAEKEDRKVRQ
RSLKDLDRAASTLAEACRMLLDPALPDGELRERVYAAIGHDELAQALNEVRGLVRPPNDVFYTELEARKATVSRFLPALL
RVIRFDANPAAQPLAQALQWLHEKPDHDPPTAIVGKAWQRHVVQDDGRINATAYSFCALDKLRSAIRRRDVFISPSWRYA
DPRAGLLAGAEWEASRPIVCRSLSLSAQPEATLSELTRELDETYRRVAARLPQNDAVRFENVGDKTELVLSPLEALEEPP
SLIALRNEIKARMPRVDLPEILLEVAGRTGCMEAFTHLTERTARAADLTTSLCAVLMAEACNTGPEPLVRPDTPALKRDR
LMWVDQNYVRDDTLTACNAVLVAAQSRIALARTWGGGDVASADGMRFVVPVRTIHAGPNPKYFNRGRGVTWYNLLSDQRT
GLNAITVPGTLRDSLILLAVVLEQQTELQPTQIMTDTGAYSDLVFGLFRLSNYRFCPRLADVGGTRFWRVDPDADYGDLN
ALARQRVNLDRITPHWDDVLRLVGSLKLGLVPAMGIMRTLQVDERPTSLAQAIAEIGRIDKTIHTLNFIDDEARRRATLL
QLNLGEGRHSLAREVFHGKRGELFQRYREGQEDQLSALGLVVNMIVLWNTLYMDAVLTQLRSEGYPVKPEDEARLSPFGH
EHINMLGRY
>Q48710_9LACT/1-85 transposon family T8 Pfam:PF01527
MARRKFDKQFKNSAVKLILEEGYSVKEVSQELEVHANSLYRWVQEVEEYGESAFPGNGTALANAQHKIKLLEKENRYLQE
ELELL
>Q54335_STRLI/1-83 transposon family T8 Pfam:PF01527
MPAPRKYPDELRERAVREVRTTGRPIAHVAKDLGIHKEALRGWVRQAEADAGERDDRLTTAEHEELKQLRKEVAELRRAN
DIL
>O87508_ECOLI/10-96 transposon family T8 Pfam:PF01527
RKGCPNYPPEFKQQLVAASCEPGISISKLALENGINANLLFKWRQQWREGKLLLPSSESPQLLPVISMQLPNSQNRSQRT
GNPQYQL
>Chapaev3-1_SM#DNA/CMC-Chapaev-3 385-2073 [Schmidtea mediterranea]
MPRECKNHPDKFCYVCGNFTTKLQRRTITTNLKKIYNLYFGCHLGDQDKPWAPHQICSACSNGLRDWVNKKKASMPFAIP
MIWREPRDHHEDCYFCSVNMTGFSTKNKNKIVYPVMDSARRPVQHGEELPIPIPPDDGVDSIEDDADGDEGATGGVPGPS
ADPDYTLEGRNFEPKLLTQGQLNDLVRDLSLSKEKAELLASRLQENNLLDKNVRISYYRKRNINLATCFTVDGPLCYCHD
IHGLFTELSQTYAASDWRLFIDSSHRSLKAVLLHNGNVKPSIPIAHSVHLKETYDNMDILLKAIKYGSHQWNICGDLKVL
GMLMGMQAGFTKYCCFLCLWDSRATTEHYSKRDWALRSTYVPGTSSVQSVPLVDPQKIFLPPLHIKLGLMKNFVKAMGKV
NSQGFEYLAKKFPKVSAAKLKEGIFVGPQIREVLLDIEFERALSPLELKAWLAFKWICANFLGNNKSHAYKDGVEKLIDA
YKEMDCRMSLKMHFLHSHLDFFPENLGAVSDEQGERFHQDIKAMEVRYQGFWNESMMADHCWMLYREIPDQKFKRKAYSQ
RF
>Chapaev3-1_PM#DNA/CMC-Chapaev-3 312-2188 (One Genscan-predicted intron)  [Petromyzon marinus]
MASRGCKHPADAFCYVCGQFIKTRAKKYSVEASAKMCEAYKAYFGMPVGDQDKPWAPHFTCEQCKKTLEGWYRGEKRAMK
FAIPRIWREPTDHSSNCYFCMVDPSKRRTGKNAPAITYPDLPSSIAPVPHCHELPVPTPPEREQPSLEESSKSESEEDVV
DPDDNFRGGAEERNPYYPNQKDLNDLIRDLGLTKSNAELLTSRLKQWNLLDESVQVADQRKRHQPFCSFFTRQDGLCFCH
NVTSLFEAIGIACNQNEWRLFIDSSSRSLKAVLLHNGNKYPSLPLAHSVHLKEDYNSIKTLLDALKYDEYGWEVIGDFKM
VAFLMGLQGGFTKFPCYLCLWDSRDTKAHYHRRDWPQRTEFSVGRNNVKWEPLVDPRKVLMPPLHIKLGLMKQFVRAVDK
ESAAFKYLQDFFPKLSEAKVKAGVFVGPQIKKILECNEFPKKLTSKEKAAWNSFVAVVRGFLGNHKVENYVELVETLVKN
YGTMGCRMSLKVHILDAHLDKFKENMGAYSEEQGERFHQDILDFERRYQGQYNENMMGDYIWGLIRESDLQYNRKSRKTT
HF
>Chapaev3-2_PM#DNA/CMC-Chapaev-3 511-2197 via tfasty with Chapaev3-1_SM, 1 frameshift. [Petromyzon marinus]
MPRTCVNKADNFCYVCGEVTFASQKRSITTMVKKAYHLYFGCKIGDQDKMWAPHICCNTCATNLRQWLNRKRKSMPFAVP
MIWREPTDHISNCYFCMAPPVGKGVSKKKKWTVHYPNIPSAIRPVPHGEGLPVPDAPESFSLESDEEEDETSGPEPSRSH
DPDFLPSSSSEPHLITQGELKDLVRDLELPKSKAELLGSRLQQWNLLAGDVRVSMFRDHQKDLVPFFFMEGDLVACNNID
GVMAALNIVHDPDEWRLFIDSSKMSLKAVLLHNGNVLPSIPVGHAVHMKETYDNMKQLLRCINYDQHQWQLCGDLKVVAL
LLGLQTGYTKYCCFLCEWDSRARDSHYIKIDWPLRQSLEPGRKSVQHPPLVESRKILLPPLHIKLGLMKNFVKAMDKTQA
AFKYLRGKFPRLSEAKIKEGVFVGPQIRELLRDDAFDSALRGKEKTAWKAFQLVATNFLGNNKADNYRELVENLLKAYKS
LGCNMSLKIHFLHSHLDFFPTELGAVSDEHGERFHQDIATMEKRYQGKWSPSMLADYCWTVTRDAPFNEYKRQAKKRRVD
TE
>ATEnSpm7#DNA/CMC-EnSpm from RepBase [Arabidopsis]
MLDKAWVHLNRADPGYERGAWKFVRDVAAVLGDMDMIICPCKDCRNVVRQSDCVVVDHLVRRGMDEAYKLHSDWYHHGDE
KSVDKVQSKLNQWNEEVFELYKAAEFFDEELACRGDLGENLVGDLSEIAECEDQREDEFLAKILDAETPLYPNCSNHSKL
SAIVTLFRIKTHNGWSDKSFNELLQTLPSMLPDDNVLHTSLYDVKKFLNSFHMGYEKIHACVNDCCLFRKKFKKLEKCPK
CNASRWKTNQHTGEVKKGVPQKVLRYFPIIPRLKRLFRSDEMAKDLQWHFTNKSTDEKLRHPVDSVTWDKMNDNCWPVLL
VNYNLPPHLCMKKENIILTLLIPGPQQPGNNIDVYLEPLIEDLNNLWKNGELTYDAFSKSTFTLKAMLLWTISDFPAYGN
LAGCKVKGKMGCPLCGKNTDSMWLKFSRKHVYMCHRKGLAPTHIYREKKTWFDGKVEHGRKTRILTGHEVYQNLKNFKND
FGNVKKSGMKRKRTVYKEPVYDSDDVSSESEEDEEVEVDEDELYRWKKRSIFFTLPYWEDLPVRHNLDVMHTEKNVAHSI
VSTLLHCGKSKDGLNARKDLQHLGLRHALHPTTQGKRTYLPAAPWSLSKNEKKIFWKRLFDFKGPDGYCSNISRGVSVGE
CKISGLKSHDYHVMMQQLLPVALRGLLPKGPRTAILRLCAFFNYLCQRVIDIEVISVLETEIVETLCMFKRFFPPTFFDI
MVHLTIHLGREARLGGPVHFRWMYPFERYMKVLKDFFCNEFLKKTTNVEEKLDRNVEYVNSSILEGRPISAGTSFTLTEM
DKNIAHLAVIQNTAAFDHYVDMHLQYLQDSNTRCRRDASVLWSMHAKNFAAWLKGEAINGQRFHTRSLERQSQNSGVYYE
ATAMCRSSAKDTSQVVDLVSYYGRIIDIILLDYNVFYVPIFRCEWAVRGNGVKVEDGFTLVNLNQSQVSFLKDPYILASQ
AKQVFYSSEEGSNWSVVMRGASRRYSNDESEDGNADIIGPLPVDVDMDTEMDEAEYARSDCEGIYVPNQPAIDEEPPTEH
QPSIDTERDVPNSEEPEGEVEFSGGHEQPRKRQRGPTKMKNLAKDPTVRVKVDYNLMGEAIGPGSVKLSSYVGTLMREHV
PINIVNWKKVTRDLKTVLWKSIQARFELDEDWQRISVINQMGNLWRAHKSRRVKAINLAANNQERMNLRPTNINPVEWQK
FVKLKTSSAFKKLESGDPSSVTRLQVWIKSRTKKDGTPVDTNAAEKIQEAAEIVGSDAPTFSTNPDEDHLAKLLGPDNPG
RLRVMGRGMSKTKLACLQVKNTCMAEMEERQVKLKKQVNDLEDEIIRIKNQRPEAEMGENSAARSVNRKSHRKCVFVDWS
ETDENVGEGRILSSDPDDIVNDCRLGPTDLKVLVETAYQPDAFLWRPAHKIFNMKEAVGHIIAWPADKCKLLDTDIQIED
IAPLGLKGNKCKLLDLKNAEVIVAEGRWETQEPSALVNGLPLGPKAVKVFVDSVKQPDTSLWRPTAEISYLEDCLMAFVA
WPLSKVDFENPSSPTGHNSTSEVSRSASKAKSAATASKSADGSKTSATASKAASESKSAAMSSKSASGSESPIDDATVIS
KENKKCKLMDLTGKNRVVAEGRWATNDPAHKVHHTPLGSNAVKVWIDIVKVANVKVWRPSDEIEIMEDALSSCIA
>Chapaev-1_BM#DNA/CMC-Chapaev-3 284-1009 via tfasty with Chapaev3-2_HM, 1 stopcodon. Fragment [Bombyx mori]
YTKFPCFLCEWDSRARDKHYVQKxWNPRKNLKVGTKNVIRKKLISPEKILLPPLHIKLGMMKQFVKALDKNNASFEYLCK
KIPRLSDAKIKEGVFDGPQIRSLMADEKFDATMNNTESDAWLAFRDVVNNFLGNNKHPDYKNKVANLLDKYQKLGCNMSI
KLHFLDSHVDFFPDNLGDYSEEQGERFHQDIKTMETRYQGRWNVNMMADYCWSLTRDITEDTHKKTTPRRNFVAKRKRCH
SK
>Chapaev3-1_HM#DNA/CMC-Chapaev-3 209-1885  [Hydra magnipapillata]
MPRKCKNQPDTFCYVCGLFTVSGQRRKITANLSKIYKLYFGCPLGDQDKTWAPHIICTSCSSGLRDWLHKRKTAFSFAIP
MVWREPKDHVTDCYFCIVNTTGFSSKNRHKIVYPDLDSAMRPVPHDPSLPVPMPPIDGLDSVEDEMEVDSCDEHQDTADL
DYSPDVEKTPEVFTQEELNDLVRDLTLSKEKAELLGSRLKQKNLLATNVKVCHYRKRNLQLATFFTVDGPLCYCNDISGL
FESLSQPHEPSEWRLFIDSSKRSLKAVLLHKGNQKPCIPIAHSVHLSETHENMKILLEAINYKTHQWNICGDLKVIGMLM
GMQMGFTKFCCFLCLWDSRAVTEHYVKRDWDQRNEYEPGRNSVENIPLVDPQKIFLPPLHIKLGLMKNFVKAMGKSNSAG
FQYLVEKFPKMSAAKLKEGIFVGPQIREVLRDINFKNSLTDEEKEAWQAFTWVCANFLGNHKSPEYEAGIQELLDSYQKM
GCRMSLKLHFLHSHLKFFPENLGAVSDEQGERFHQDIQLMENRYQGFWNESMMGDYCWMLYRDNPDKVFKRKSYSRRF
>gi|159154707|gb|ABW93691.1| transposase [Neisseria meningitidis]
MKLKNKYQKFSKISEQKFREIIRCFALDLTASDTAKMTGISVRGINPIFLKIRHRIAALCEQSSPLSGVVELDESYFGAR
RIRGKRGRGASGKTIVFGILKRNGVVYTEIVPDASKASLIKVIRGHISADSEINTDGWKAYDGLVDMGYEKHYRVPHGSN
EFARGKQHINGIESFWSYTKGRLAKFHGISKEMFYLHLKETEFRFNHRHEDLGKILMKMLRNNPI
>gi|159154690|gb|ABW93675.1| transposase [Neisseria meningitidis]
MKLKNKYQKFSKISEQKFREIIRCFALDLTASDTAKMTGISVRGINPIFLKIRHRIAALCEQSSPLSGVVELDESYFGAR
RIRGKRGRGASGKTIVFGILKRNGVVYTEIVPDASKASLIKVIRGHISADSEINTDGWKAYDGLVDMGYEKHYRVHHGSN
EFARGKQHINGIESFWSYTKGRLAKFHGISKEMFYLHLKETEFRFNHRHEDLGKILMKMLRNNPI
>Pi_mutatorX.pep  mutator-family transposase [Phytophthora infestans]
MPRKPPPNYGSSPFVVDLSDIATAISMGVLREDAKVDTSDRSSQKYGGVYATRTNIADTEFPTQKAARATCDDFATVCGF
QLIVQSSSVKPNNSGNAKYVCKKLNGMEFFDKVTPAKDLSCPFFINVHGKNGVWKITQANFAHNHLKNIGSTQKPLAEGN
IPREKKAKRNRSVREAQLSAVVAREILPAHANSTSTLSGKAVQKFFKGKGINVSKSSISRIKQDLDEKLHGDLLESYQKL
KSYLELLASKNPGSLWRYESESDGVTFKRACIVPNAGAHIVSMTKNLISFDGAHLQEDMNKRGVFLVATTKDYNNHIIPF
GFALVPTENYDNWVWFLRAVKDAIKVERITILSDRQKGLISAVAEVFPSAGHRFCLRHIMDNINRANHRLSLQDRATICS
IARSDCENDYNLYMNELEISNSGAAEYLTKKTEVITPSGTEQRLVLPTENWVKYKFFEKFGLSTYDEITSNISEQANNWM
GKDLRSSKPLDAFNLYCFKLGQLMSDKRNEAADWLDSRSETDLVPVLLAKRDKRAVVAKMCDIQAHGEAFFSVQHVGALP
KPGYIHPWRMVDLNSKECTCGNWEDEQFPCVHAICAATKHGMRLEELYDAQRLSIGHFKDTYTFKFLPWPTTESLVTNPQ
TKIPQLAPEPERIGKRGKKPGPHPKHARKKAKNAL
>Chapaev3-1_DW#DNA/CMC-Chapaev-3 979-2587 via tfasty with Chapaev3-1_AA, 4 frameshifts and 1 stopcodon. [Drosophila willistoni]
MNKCPTSFAVFCYVCGKFTSPRSRRKISPGTAAIYEEYFNLPVIRDVNWAPSNICTQCNNNLQNSSKRLRAKMGFGIPMI
WIDPQGHHTGNCYACQNKLAKLKKSSMLYKSVQSAQLPVPHSENIPIPRRQSPTERYIPPTFFTEPEELLSMYEPSQIDK
PCQHVEISQARLNTMVRQLKLSQRQAICLAHHLRSVNILSKDVKVYGYRKRQEELLDFFEINGNNTFAYCKNIVGLMEHM
NCEYKPEEWRLFIDASKNSLKAVLLYVDNTKNPVPIAFSSNTKETNDSMKLILDCVQYKKHQWKICADLKVVALLTGLQA
GYTKNMCFIYHWDTRYRGNQYDEASWKARTEYNINVANVIHTPLIPANKILLPPLHINLGIVNRDGKAFQSLTQIVPRLS
VAKIKYDQKFHLGVLNGPDIRKLIKNSEFCELLRPKEKMAWNLRxSCLGVRRIEGWQGNVDQMLESFKDMGVNMSLKIHF
LHYHKDHFDGNVPTESDEHGERFHQVAASLEHWYSGKRLDSLLADLCWNLINEAYGI
>Chapaev-8_HM#DNA/CMC-Chapaev 675-5663 (8 introns predicted by genewise using Chapaev-3B_HM)  [Hydra magnipapillata]
MEIHNKNLTLLCRVCGFLVGKKSYPIGTNQKNKIEKVFHVMLSDEQENVHPNKICHKCYNTINNVIKRMTSTTLHLSMNW
KPHCDECFCCQQVEKLCKGLNFAKLLKQNKKLIGRPGIGEKVWSFSMIANIKKSIVTTHDSEIDIEELKNEFNPHLQLCQ
CNLCGKIPKQPVTLKKCEHLFCFFCIVENIKVKKLNETSCPKCKELILPEDLVTSVKTNSLLNMLTVECICKKKYNVMKE
YDLYTNHKSVCIDKSIVQAAPLLSPSISSFASNLASSSSFTVSTSSSTSYLFNNNISEIFNLTVDNDIPRIVEDAALHVL
KQKMAKDGGQVVEFKSGGSRVMIFFNFSLISSHSSQRIVAEKLSGDDLVVENAPFTFEKEEKGTFEIKYVSWGYIENLPM
HILRHLDQLESCKRLHHHEFIPEKEIQIKIGGDYGGGSFKMTYQVANTLNPNSKDNTIVFSIFEAKDYRVNVKVAMSRFE
KQIEDLQKMKYKDNNIRVFVFGDYQFLCALYGISGASGRHCCLFCYATASDMKFGEHKSSEIKDRTLEDLFLDHERFIEN
GGLKKNAKNFNNVITEPILKIPLDQVSLPSLHMALGIYLNFFNLFEEEVHQLDILIAAEAVKSNINFSEAYTVFVSKQKQ
LLNLQTKILNLDNQIQLINDFILLAAVNNSYNLEXFKLYTLQKLSYLMVKKQKRLNNLLTNIYNTLFGKHSFEFGQRPCT
KMIETVLQKLKVQRQAYHGKSFIGNHVHKMLKKSSILQLCNCIPKLVHEEGYSGTSVHQFAVEISNKYKQLFDKFAQCYK
IFSSKNTITQDDLILLMTPKLHMLEHHAIPFMEKWGAGFGFYGEQGGESIHMEFNKLKTIYQSIPCPTLRLKSILKSHYQ
KTNPENMRLKPCLKKKKRS
>F22D12 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
MERGHIRESMSPCAVPVLLVPKRDGSWRMCVDCRAINNIMVKYQHPIPRLDDMLNELHGSSIFSKVDIKSGYHQIRMKEG
DEWKTAFKTKQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAYIGHFLVVYFDDILVYSKSLEEHVEHLKMVFEVLRKEKLY
ANIKKCTFRTDNLVFLGFVV
>gi|29423283|gb|AAO73530.1| envelope-like protein [Glycine max] (SIRE1) (Ty1_Copia-family)
QLLLSERAQTSHLTLIARSLLSQNKFDRCFTRPSTFLIQTYIFVVISFSAYPNSSQRFTKSFQTLCFSMATSPKETSAPG
SPSVPSSPSSTKAPSNQERPEFNIQPIQMIPGQAPVPEKLVPKRQQGVKISENPSLATSPREVDTEMDKKIRTIVSNILK
DVSVPDADKDVPTSSTPNVSVPDAEKDVPTSSTPNAEVLSSPSKEDSTEEEDQATEETPAPRAPEPAPGDLIDLEEVESD
EEPIANKLAPGIAERLQSRKGKTPIKRSGRIKTMAQKKSTPITPTTSRRSKVAIPSKKRKEISSSDSDDDVELDVPDIKR
AKTSGKKVPGNVPDAPLDNISFHSIDNVERWKFVYQRRLALERELGRDALDCKEIMDLIKAAGLLKTVTKLGDCYESLVR
EFIVNIPSDITNRKSDEYQKVFVRGKCVRFSPAVINKYLGRPTDGVVDITVSEHQIAKEITAKQVQHWPKKGKLSAGKLS
VKYAILHRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFDQTVKHSESFAVKLPIAFPTVLCGIMLSQHPNI
LNYTDSVMKRESPLSLHYKLFEGTHVPDIVSTSGKAAASGAVSKDALIAELKDTCKVLEATIKATTEKKMELERLIKRLS
DSGIDDGEAAEEEEEAAEEEEEAAEEEEDAAEDTESDDDDSEATP
>T9F8/T4E14 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
MEKGHIRESMSLCAVPILLVPKKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEG
DEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELY
ANLKKCTFCTDNLVFLGFVV
>aF19I11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LRIGSITEAKYPDWIANPVVVKKKNGKWRVCVDFTDVNKACPKDSFPFPHIDRLVESTSGNKLLSFMDAFGGYNQNMMNP
EDQEKTAFYTEQGIFCYZVMPFGLKNAGATYQHFVNKIFALQIGKTMEVYIDDMLVKSMAEKDHISHLRECFQQLNLYNV
KLNPAKCRFRVRSGEFLGZLV
>T27D20 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
IDKGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGAIIFSKVDLRSGYHQVRMREG
DEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRSFIGKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLY
ANLKKCTFCSDKFFF
>gi|29423280|gb|AAO73528.1| envelope-like protein [Glycine max] (SIRE1) (Ty1_Copia-family)
QLQQSERAQTNHLTLIARSPQSKFDRCLTRPSTFFIQIYICLAFVFSPAFSNNSLRFTKSFQTLCFSMATSPKETAASGS
PSVPSSPHQEQPEFNIQPIQIIPGQASVPEKLVPRRPQGVKIAENPSPATSPREVDTEMDKKIRSIVSSILKDASVPEAD
EDVPTSSNPDVSVPDVKKDVPTSSAPNAEALPSPSEEGSTEEDDQAAEETPAPRAPEPAPGDLIDLEEVESDEEPIANRL
APGIAERLQSRKGKTPIKRSGRIKTMAQKKSTPITPATSRRSKVAIPSKKRKEISSSDSDKDVELDVSTSKKAKTSGKKV
PGNVPDAPLDNISFHSIGNVEKWKYVYQRRLAVERELGRDALDCKEIMDLIKAAGLLKTVSKLGDCYEGLVREFIVNIPS
DISNRKSDDYQRVFVRGKCVRFSPAVINKYLGRPTDGVIDIDVSEHQIAKEITAKRVQHWPKKGKLSAGKLSVKYAILHR
IGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFDQTVKHSESFAIKLPIAFPTVLCGIMLSQHPNMLNYTDSVM
KRESPLSLHYKLFEGTHVPDIVSTSVSTSGKAAASGAVSKDALIAELKDTCKVLEATIKATTEKKMELELLIKRLSESGI
DDEEAAEEEGEAAEEEEEAAEEEEDAAEETESDDDSEATP
>gi|15723993|gb|AAL06411.1|AF378035_1 reverse transcriptase [Triticum aestivum] (Gypsy_Ty3-family)
VRKEVFKFLEAGITYPVADSEWVSPLHCVPKKGGITVVLNDKDELIPQIIITGYRMVIDFHKLNKATKKDHYPLPLIDQI
LERLSKHTHFCFLDGYTGFSQIPVSVKDQSKTTFTCPFGTFAYRLMPFGLCNAPTSFQRCMMAIFSVFCENICEVFMDDF
SVYGSSFDDCLSNLDRVLQRCEDTSLILNWEKCHFMVNEGIVLGHKISERGIEVDKAKVDAIEKIPCPKDIKGIRSFLGH
AGFYRRFIKDFSKV
>Q9XE24 /118-277 Pfam PF03108 MuDR family transposase (MuDr-element domain)
SADHAVAATTPDGSKRQKICASWENAITGAGQVFEGPKEFRDALHKYAIAHRFHYRFVKNDSSRVTVECTAEGCPWRIHA
SKSPAKKDFMIKKVFGSHTCESESVKSHRLASQKWVASVIKEKLRDSPNYRPRDIANDLQREYGLSLNYSQAWRGKSIAQ
>gi|15723989|gb|AAL06409.1|AF378033_1 reverse transcriptase [Triticum aestivum] (Gypsy_Ty3-family)
VRKEVFKLLEAGIIYPVVDSQWVSPVHCVLKKGGITVVPNDKDELIPQRIITGYRMVIDFRKLNKATKKDHYPLPFIDQM
LERLCKHTHYCFLDGYSGFSQIPVSAKDQSKTTFTCPFGTFGYRRMPFDLCNAPATFQICMMAIFSDFCEKICEVFMDDF
SVYGSSYDDCLSNLNRVLQRCEETNLVLNWEKCHFMVNEGIVLGHKVSERGIEVDKAKVDAIEKMTCPKDIKGIRSFLGH
ARFYRRFIKDFTKV
>gi|4996367|dbj|BAA78426.1| polyprotein (AtRE2-1) [Arabidopsis thaliana] (Ty1_Copia-element)
MATHAEEIVLVNTNILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQ
DKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQGFITRFDQLALLG
KPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINQESKLLALNSAEVVPITANVVTHRNTNTNRNQNNR
GDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAV
NSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNINKNLIS
VYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSV
ISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVDHFTRYTWLYPLK
QKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSH
ASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLT
QSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPP
SLPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPI
SSPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAANSEPRT
AIQAMKDDRWRQAMGSKINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETF
SPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELR
TYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGL
HLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTD
DNWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEY
RSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQL
ADTLTKPLSRVAFQNFSRKIGVIKVPPSCGGVLRI
>gi|15723975|gb|AAL06404.1|AF378024_1 reverse transcriptase [Avena sativa] (Gypsy_Ty3-family)
VRKEVFKLMDAGIIYPIADSEWVSHVHCVPKKGGITVVPNDNDELIPQRIVVGYRMCIDFRKVNKVTKKDHYPLPFIDQM
LERFSKKTHFCFLDGYSGFSQIVVKQQDQEKTTFTCPYGTYAYRCMPFGLCNAPSTFLRCMSAIFHGFCEEIVEVFMDDF
SVYGTSFDNCLHNLDKVLQRCEGTNLVLNWEKCHFMVNEGIVLGHKVSKRGIEVDRAKVEAIEKMPCPRDIKGIRSILGH
AGFYRRFIKDFTKV
>aF23C08 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVQYPDWLANTVVVKKKNGKVCIDFTDLNKACPKDSFPLPHIDNLVESTAGNELLSFMDALSGYNQIMMNPED
QEKTSFITDRGIYCYKVMPFGLKNAGATYQRLVNKMFNEHLGKTMEVYIDYMLVKSLKKEDHVKHLEECFAILNQYQMKL
NPAKCTFGVPSGEFLSYIV
>Tma8-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPD
DIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLF
AKLSKCAFAVPKVEYLGHFI
>Athila1-3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGIIYPISDSTWVSPVHVVPKKGGVTVVKNDNDELIPTKTITGHRMCIDYRKLNATSRKYHFPLPFIDRMLERLANHT
HYCFLDGYSGFFQIPIHPNDHEKTTFTCPFGTFAYIRMPFGLCNAPATFQRCMMSIFSDLTENVVEVFMDEFSVYGNSFA
SCLSNLCKVLKRCEQANLVLNWEKCHFMVKVGIVLGHKI
>T25N22/T13E11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
VDAGVKYPISESTWISLVHCVPKKGGMTVVKNEKNELIZTRTITWHRMCIDYRKLNVASRKDHFPLPFIDQMLERLANHP
YYCFFDEYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMAFGLCNAPATFQRCMTSIFSDLIEEIVEVFMDDFSVYSPSFS
SCLLNLGRVLTRCKETNLVLNWEKCHFMVKEGIVLGHKI
>T1O13 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGAPVLFVKKKDGTFRLCIDYRGLNRVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEA
DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFLEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVKEKLREQKLF
AKLSKCSFWQREMGFLGHIV
>T13P21 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNP
EDQEKTLFITDRGIYCYKVMPFGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQM
KLNPAKCTFGVPSGEFLGYIV
>T14A16 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISYSTZVSPVQCIPKKGGITVIKNEKDELIPIRTITGLRMCIDYRNLNAASRNDHFPLPFTDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDHEKTTFTCPYGTFAYERMPFGLCNAPATFQRCMTSIFSDIIEEMVEVFMDDFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIMLGHKI
>T14A11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEKGFICPSSSPWGAPVLFVKKKDGSMZLCIDYRGLNNMTIKDKYQLPZVNELMDQLGGASWFSKIDLAFGYHQISISGS
DVMKTAFQTRNGQYKFVVMPFGLTNAPAAFMRLMNEVLHDYLDSFVIIFIDDILVYSQSAEVHREHLGKVLDRLREQRLF
AKFSKCKFRQREIGFLGY
>aF24C20/T27D6 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVKYPDWLANSVIITKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGHELLSFMDAFSGYNQILMRP
DDQEKTAFITDRGTNCYKVMPFGLKKNDGATYQRLVNRMFADQLGKTMEVYINDMLVKSARNHVPQLRECFKILNKFEMK
LNHEKCSFGVPSGEFLGYLV
>T12H3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQHGGAQWFSKIDLASGYHQIPIEPT
DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSWEAHQEHLRAVLERLREHELF
AKLSKCSFWQRSVGFLGHVI
>T27B3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDADIIYPISDSTZVSPLHCLPKKGGMTVVKNDLDELIPTRTITGHRMCIDYRKLNAATIKDHFPLPFIDQMLERLANHV
YYCFLDGYNGFFQIAIHPNDQEKTTFTCPYGIFAYKRZTLDAPGTFQRSMTSIFSDFIEEIMEVFMDDFSVYGSSFYSCL
LNLYRVLERCEETNLVLNWEKCHFMVQEEIVLGHKI
>T10P12 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
SPMLLVKKKDSSWRFCVDYCAINRATIPDKFPIPVIELLLDELHGAMIFSKIDLCSGYHQIRMKPEDIEKTAFHTLEGHY
EFLVMSFGLTNAPATFQSSMNRISKKLLRKFVLVFFDHILIYSPSVESHVKHLREVLQLLADNKLYENMKKCSFGVQQVE
YLGHII
>GB:CAA48849 ORF1 (ISa-element) [Corynebacterium glutamicum]
MPRKTYTEEFKRDAVALYENSPEASIQTIATDLGVNRATLANWVKKYGTAAPNETPSPASVNEAEQIRKLERENARLREE
RDILRKAAKYFAEETNW
>GB:AAB01067 transposase (ISa-element) [Lactococcus lactis]
MSGFKRYDEDFKQSLVNLYQTGKTQTELCKDYGVSSSALAKWIKQYSQVRLEDNTVLTAKPDFKNYKKGMPARGRKSDLK
KSECHIHAKLQVRLKAIYRLRFEHTTVMLCRVLHVNRSTYYNFINKRPSKREIENQRLRKLLLEIYMKAKKRIGTRAFKI
ILLRDYGVNISEGRILRLLKSMTLPKMSTIKPRFKSNKSPVFSSDNLLKQEFNPNSPNQVWTTDFTYISIGPKRHVYLCA
ILDLYSRKCIAWKVSDRIDAKLACDTLEIAINKRKPKEPIIFHSDQGSQFKSASFRKLLDEHQLLASYSKPGYPYDNAVT
EVFFKYLKQREINRRTYHSIQEVQLSCFEYIEQFYNNYNPHSANNGLTPNQKEKIILRKYSSFCV
>GB:AAA60328 12.7 kDa protein (ISa-element) [Escherichia coli]
MTKNTRFSPEVRQRAIRMVLESQDEYDSQWAAICSIAPKIGCTPETLRVWVRQHERDTGGSDGGLTTAERQRLKELEREN
RELRRSNDILRQASAYFPKAEFDRLWKK
>GB:CAB61575 transposase A (ISa-element) [Yersinia enterocolitica]
MSNTNEVRMRKKSFTHEFKQECVNLVLQHKYPVTQAAETMNIGLSTLQRWLRQYRGESRGNTPIASAITPEQRRIQKLEK
QVRQLQSDNDLLKKASAFFAMEMNNDKKSR
>GB:AAA60329 putative transposase (ISa-element) [Escherichia coli]
MMPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAHHDDWLKREIQRVYDENHQVYGVRKVWRQLLREGI
RVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYI
VGWRVSSSMETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAE
VIHRKSWKNRAEVELATLTWVDWYYNRRLLGRLGHTPPAEAGKAYYASIGNDDLAA
>GB:AAC97536 transposase (ISa-element) [Enterococcus faecium]
MSKRTRRTFSQEFKQQIVNLYLAGKPRVEIIREYELTASAFDKWVKQSKTSGSFKEKDNLTPEQKELLELRKRNQQLEME
NDILKASSADIRTKRQVIDANKHLYPISAMCRILGLSRQSYYYQSKPKKDESELEEVVAEEFIRSRKAYGSRKIKKALSK
RGIQISRRKISRIMKNRGLKSSYTVAYFKVHHSTCNEAKTTNVLNRKFLRDNPLEAIVTDLTYVRVGKKWNYVCFILDLF
NREILGYSCGEHKDAVLVKKAFSRIKQPLTEVEIFHTDRGKEFDNQAIDELLTTFDINRSLSHKGCPFDNAVAESTYKSL
KVEFVYQYTFETLQQLDLELFDYVNWWNHLRLHGTLGYETPVGYRNQRLAQRILDNELGCANASEAV
>GB:AAA88574 unknown protein (ISa-element) [Streptococcus agalactiae]
MIKLMDRYGVEIVEKGRNEYYPPELKQEMIDKVLIHGCSQLSVSLDYALSNCSILTNWLSQFKKNGYTIVEKTRGRPSKM
GRKRKKTWEEMTELERLQEENERLRTENAFLKKLRDLRLRDEALQSERQKQLEKWSQEDSD
>GB:AAC97540 putative transposase (ISa-element) [Acinetobacter sp. ADP1]
MAKRFSPEFKQQAIDYALSNSHEPIATIAQKLGVGYSTLDKWIREANPVGSSKRQLSPEQQRILELEKEVKQLREANDIL
KKSACVLSDRSCQEKYTVIQDLDVNEVTVSSACKCLGVSTSGYYAWRKRQTNLAQKYNDLKAVYWQHHARLGAPSLVHDM
HDLGYSMSERTVGRMLKKLGLRSKIARKYKHTTDSNHRLPTAPNLLDRQFTVNEPNKIWTTDITYIRTKQGWLYLCVMLD
LFSRRIVGWQTSHRIDRQLVCDAFHYAMARQGYPMGVMVHSDQGSQYCSRDFRALLLTNNCVQSMSRRGNCWDNAVTESF
FHTLKGHMVHGSVFATRKEANAVLFDYIEIYYNRIRRHSTNGWLSPEAFEQKYFKNLEGFVVHDTV
>GB:CAA71078 ORF1 (ISa-element) [Bacillus thuringiensis]
MTYFYTHLGCTPSSRPYVCLSIRAPMPYCSNILWADRLDNRFLKLERNSGTLILSPLSRQCKKTMYIHGCYTITWRGFFM
TKKGSTFITYSEELKLAAVQSYVNGEGSYNMIKEKYQIISSTQLKNWVKKYKESGEITDTRGKNGGMKGISNPLKGKRVH
FKTIEEERDYYKAQVEYLKKKYPNL
>GB:CAA29385 ORF B (ISa-element) [Shigella sonnei]
MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQK
RKFRATTNSNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVRYAMGERMTKELTGKALFM
ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIRE
YIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
>GB:CAA36516 put. transposase (AA 1-253) (ISa-element) [Lactococcus lactis]GB:CAA36516 transposase (AA 1-253) (ISa-element) [Lactococcus lactis]
MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGIMTNTKRVGKLMHLMGLYAKGSRYKYKHYNRKGSSLS
RPNLINQIFKATAPNKVWLGDMTYIPTKEGTLYLAVNIDVFSRKIVGWSMSSRMQDKLVRDYFLQACGKEHPQPGLIVHT
DQGSQYTSSRYQSTLRQVGAQSSMSRKGNPYDNAMMESFYKTLKRELINDAHFETRAEATQEIFKYIETYYNTKRMHSGL
DYKSPKDFEKYNS
>GB:AAA88919 ORFB (ISa-element) [Leptospira interrogans]
MFMETHRFEYSIQSMANVLGVSRSGFYQFLKRSKNELEKYNPELVEFIRETWLTSRKNYGLVRLLREVKKVYSIYGARTV
RKVMKLCEIQGKQEKRFRIATTDSNHGNRVAPNLVQRNFKPNQKNRIWVSDITFLRFSFGWIYLCVILDLYSRKVVGWSI
SNSNDSKLVCTALSKAIECRNPPKGLVFHSDRGSNYCSYETRRYLLNNKLRRSNSRKGNCWDNAVAESFFGSLKREMEYN
YFYKIQEAEELLFDHIEVYYNRHRSHSSLDFVSPVQFEVNAA
>GB:CAA43886 unnamed protein product (P-element) [Drosophila guanche]
MTWCSVCGKVANHVKLVHVPVCLEKRKLWEQILDCSFAVNSKICDSHFDASQWRSPPKEGQIYKRRRLKADAVPHGEPEP
KFVKLGFANSSTQTEDNVINHAIRVENESLRKQNRRMQKEMHSLRQQLEDFKELEISLKTIFTETQINILKSGGKRAVFN
ATDMSAAICLHTAGPPAYNHLYRKGFPLPSRATLYRWLADVNISTGTLDVVIDLMENEEMPEVDKLCVLSFDEMKVAAAF
EHDSSADVDYEPSTYVQLAIARGLNKSWEQPVFFDFSTLMDADTLHSIINKLHKRGYPVVAIVSDLGAGNQTLWTELGIS
ETRNWFTHPADEDLKIFVFSDTPTLIKLVRDQYVDSGLIINGKRLTKSTVQQTISHCAKPDVSMSFNITDNHLNIGPLAK
QNIKLATQLFSNTTGSFIRRCNALGYNVQNASETADLFKIINDWFGVFNSKSSTSNSIEPTQPYGKQIEIQRGILAKMSE
IMSSEILGVGAHSLPFQKGILVNNASLEGLYCYLSEKYEIEYIFTSRLSQDIVENFFMPMRPKGEQFEHPTPLQFKFMLR
KYISGMTKLNKPIDK
>GB:CAA28410 ORF 1 hobo (hAT-element) [Drosophila melanogaster]
MAPYIMIVEFLCLWSSVSAVNCPFFVFYDAITSLLGFSIIWKPKEKVTIMAEAADFVKNKINNGTYSVANKHKGKSVIWS
ILCDILKEDETVLDGWLFCRQCQKVLKFLHKNTSNLSRHKCCLTLRRPTELKIVSENDKKVAIEKCTQWVVQDCRPFSAV
TGAGFKNLVKFFLQIGAIYGEQVDVDDLLPDPTTLSRKAKSDAEEKRSLISSEIKKAVDSGRASATVDMWTDQYVQRNFL
GITFHYEKEFKLCDMILGLKSMNFQKSTAENILMKIKGLFSEFNVENIDNVKFVTDRGANIKKALEGNTRLNCSSHLLSN
VLEKSFNEANELKKIVKSCKKIVKYCKKSNLQHTLETTLKSACPTRWNSNYKMMKSILDNWRSVDKILGEADIHVDFNKS
SLKVVVDILGDFERIFKKLQTSSSPSICFVLPSISKILELCEPNILDLSAAALLKERILENIRKIWMANLSIWHKAAFFL
YPPAAHLQEEDILEIKVFCISQIQVPISYTLSLESTETPRTPETPETPETPETPETPETPETPETPETPESLESPNLFPK
KNKTISSENEFFFPKPVTESNSNFNESPLDEIERYIRQRVPLSQNFEVIEWWKNNANLYPQLSKLALKLLSIPASSAELK
ECFP
>GB:AAA21566  mudrA of transposon="MuDR" (MuDr-element) [Zea mays]
MDLTPSFNSLDSNGIPNSPDVDPALGETGGSEGLQKIDGESQLDWDSIIVSDVLDDEGRVQVPTENEIYFNLGLNKGDEA
ANNRFSGSGTNCHAQGSLDTDNEDHHADQPCQDYIPDEKRVVYNRMNPSMQPGCLFPNMKEFRIAMRQYAIKHEFELGIE
VTSTTRYVGYCKGGDCPWRIYAREEKKGLPTIVVAVLDDVHTCTSSGRRRTTTPTCGWVAFHAKPLLMKKPQMGAKELQQ
TLQTTHNVTIGYDTVWKGKEKALRELYGSWEESFQLLYSWKEAVIAVMPDSVIEIDVILEDGKYYFSRFFCAFGPCISGF
RDGCRPYLSVDSTALNGRWNGHLASATGVDGHNWMYPVCFGFFQAETVDNWIWFMKQLKKVVGDMTLLAICSDAQKGLMH
AVNEVFPYAERRECFRHLMGNYVKHHAGSEHMYPAARAYRRDVFEHHVSKVRNVHKIAEYLDQHHKFLWYRSGFNKDIKC
DYITNNMAEVYNNWVKDHKDLPVCDLAEKIREMTMELFHRRRRIGHKLHGIILPSVLAILKARTRGLGHLSIVKCDNYMA
EVRDSTNCMTKHVVNAELKQCSCEEWQHTGKPCQHGLALIIAQDSRDVGMENFVDDYYSTERFKIAYSRRVEPIGDRSFW
PSVDFASGVFAPIARRGLGRQRKNRIKSCLEGGSARNKSTNENEKTKKRLKRQYTCPNCGELGHRQSSYKCPLNGTKKRK
RKPRINTTKNWIPKELRTSSQNVPVQPDVAEEVTEQELEDPQPETEQLGLALFQPLGAQITEQEADEPAEQAPPASPPPT
RKWLVKKITPKKRLRISAQQKQY
>Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)
DIPPLFEDIEYEVDNLPDLDIDDDGKGIYQGKVYASKEDCQIGLAIFAIKNQFHFKQTRTKWNYFVLSCSDEKCDWRILA
TVMNGTVFKATSKVIASVFKAKYSEASAGPVPMDLQQLVLEDLRVSASYKKCWRARESAL
>GB:AAD24042 RIM2 protein (CACTA-element) similar to En/Spm transposon protein  [Oryza sativa]
MMWYFPIIPRLRRLFRNKGNARMLRWHAEERQQDGMLRHPADGSQWQNIDRKFKEFGMDARNIRFGLSTDGMNPFGEMSS
GHSTWPVTMCIYNLPLAMHEEEVHNDADYYSRPKQPGNDIDVYLRHWLKILNSCGRRKVSPCGTRTNRRRFKLRALLFVT
INDWPALNNISGQSNKGYKTCTHYMDETESTYLKHCRKVVKMGHRRFLAANHPVRKKGKHFEHKADHRTEPKHRSGKTVF
AMVKDLKVVFGKGPGSQPIESEDGHRRCGKRNPIFWELPYWEFLDVRHAIDVMHLTKNLCVNLLGFLSVYGKSKDTLEAR
NDLKHMEQCSDLHPEPKEKGSHYLSPASYTLSKAEKESMFECLESIKVPSGYFTNIKRIISTKEKKFTNLKSHDCHVLMT
QLLPVVIRDIFPDNVRATITKLCVFMNVISQKVIDPDRLEALQNDVVQCLVSFELIFPPSFFNIMTHLLCHLMKVISILG
PVYLHNTFPFERYMGVQKKYVRNHARPEASIAKGYGTEEVIEFCVEFIEDLRPIGVPESRHEGRLREKGTLGRKAIMTVD
NDLFRKAHFTILQHTSLVAPYIEEHLALGRARNIGKSDAWIARHHIDTFPTWLRQHLMGTPEINQQLAFLARGPSGSIAT
FQGYEDQWVHILH
>GB:AAB61273 transposase (ISb-element) [Shigella boydii]
MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL
ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY
LNIKHYQ
>GB:AAC05651 transposase-related protein (ISa-element) [Leptospira interrogans]
MKSNCLEHSIGSMARVLGVSRSGYYKYLNRHKDRSVAPDLTNFLQEKWLKSRKNYGFKRLFQEVKKSNLPYGARKVRKAM
KHCKISGKQRKQFRPLTTNSKHGGRIAPDLVQRKFHPNEQNRIWVSDVTFIRTSFGWSYLCVILDLYSRKTVGWSLSDRN
DSQLVCDTVLKAVLSRNPRKGLIFHSDRGSNFCSKETRRLLIANGIRRSNSRKGNCWDNAVAESFFSSLKREIEYNTFYN
IEEAEHLLFDFIEVYYNRFRFHSTLGYMSPEEFETNIA
>GB:CAB60067 IS6110 transposase (ISa-element) [Mycobacterium tuberculosis]
MRWGVESICTQLTELGVPIAPSTYYDHINREPSRRELRDGELKEHISRVHAANYGVYGARKVWLTLNREGIEVARCTVER
LMTKLGLSGTTRGKARRTTIADPATARPADLVQRRFGPPAPNRLWVADLTYVSTWAGFAYVAFVTDAYARRILGWRVAST
MATSMVLDAIEQAIWTRQQEGVLDLKDVIHHTDRGSQYTSIRFSERLAEAGIQPSVGAVGSSYDNALAETINGLYKTELI
KPGKPWRSIEDVELATARWVDWFNHRRLYQYCGDVPPVELEAAYYAQRQRPAAG
>GB:AAC71697 unknown (ISa-element) [Mycobacterium avium]
MLFVGDDWAEDHHDLYLMNEAGDRLASRRLPEGLAGIRLLHDLIAAHADDPAQVAVGIETDRGLWVEALTGAGYQVYAVN
PLAVARYRDRHAVSGAKSDAADAKLLADLVRTDRHNHRLIAGDTPDAEAVKVLARAHQNLIWTRNRHTNALRSALREYYP
AALEAFDDLSDRDALAILGHAPDPRQASSLSLAKIRSALKAAGRQRNIDIRAQEIQAALRSEQLAAPAAVTAAFAATTRA
TVGLVVELSRQIDDLENELAAHFETHPDADIYRSLPGLGVILGARVLGEFGDDPNRYTNAKCRKNYAGTSPLTIASGRKR
AVLARHIRNRRLYDAIDQWAFCALTRSPGARQFYDHRRAEGDLHHQALRALGNRLVGILHGCLRHRTRYDEHKAWAHRTP
>GB:AAA72050 ORF (ISa-element) [Aeromonas salmonicida]
MNGERWPTADWWYPSARQSKSSITMSYQQLTEGQRYQLSVLRAQGMSILATARAIGVHRSTLYRELRRNAGPQGYQPDNA
HQHATHRRASAAKSRLSADVIQFLELTLAWWWSPEQISAVGKQIGLMVSHEWIYRHVAADKARGGQLYRHLRQGHKRYRK
GASSLRSPIKEARSIDERPAIVDSRERLGDWEADTVLGKQGTGALVTLVERKSRLYLVKRVANKQAGVVRDAIIEMLTPY
IEQVHTITFDNGGEFAEHKAIEEALGAETYFAHPYSSWERGLNENSNGLLRQFIPKGTDLREVTDEDVRRAEQWLNLRPR
KCLGFRQPVKVFEEYRQAA
>GB:CAB62563 ORF (ISa-element) [Ralstonia eutropha]
MTKKNYQQLSETERHAIALGLQQKQSLSAIARALGRDKSTISRECNRNAGGKGYASKFAQQRSDNRKRQARPSPKLHRQG
PLFPLVCDYLRHKWSPQQIANELQRLHPQDRRLQASHESIYTCIYAQPRGELKKELVSCLRMAHAKRWPRSRGKDRRKET
QDLLSIHVRAPEIEDRQLPGHWEGDLIKGKANASAIGTLVERTTRLVVLVKLPHPNPATAAHVLQAFSDKLKTIAQPMRQ
TLTYDRGSEMAEHRQLSENTGMKVYFCDPYSPWQRGSNENTNGLLRQYFPKGTDLSGYSQEQLDAVADELNGRPRMTLGW
RKPIEVYAEHLARLAQQPDLVH
>F17L24-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPCTSPWGAPVLFVKKKDGSFRLCIDYRGSNRVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHZIPIAEA
DVCMTAFRTRYGHFELVMMPFSLTNAPATFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREZKLF
AKLSKCSFWQREMGFLGHIV
>PITG_09177orfA  ORF encoded in two-orf-containing DDE transposon [Phytophthora infestans] 
MDERRRQNSYIVKQRREALERVALEGCKPTARALNIPLGTLKGWRKKAKLLFEFKGPQTSRTTKGQGAKTKITFEHELVT
FMKDYLCTGGMIEYMKMEQGAWLEQYLADKSSPERALSALMRMCQRFAAR
>PITG_18967 (crypton) Cre-like tyrosine recombinase [Phytophthora infestans]
MSLSDLAPTNTKRARDGAARMFKAFLEEEGVTWEYLEVCMKRDNAPRVLEAVVDKFGMHLAFKEGRKGSLLARHSVMQYY
RQAKNWLLDQFPQHREAVGKVLLKKGQVLERYCMKRKSGNFVKKAPACTKKALKPMMVYLYSNGVTASDYQDAALLCLLW
FLFGRASDISLLRKVTLSIGSGGIFFLRLIRVQTSEEQGLSLFSDDDFATCPLLAIAVALATQSAPAAALLNHLPEQQVA
TEASLTPAAPRIDLIDNPEAVAPLNSTTDENKPLDDTTGIHGYVNRVLTRIMPEAGVVQRLTSHSFRRGGAQHANSVGMC
AFAYVFNTPAEDHKVARVLSNRGPDDSVALLSLDVFDSYTRQSIRLVSSALFTSSSGMESEQYNVNAAVHDTLMAYLLRH
YPSLKTLSTSGLVIQRLEACAEDKGFTVNHLLAWSAYLSSNPSTAEDSKSKFAHDNPDDITQHPVYFQQTALIEQLIQVN
KKLDARLTGMEDIIGNKHPRAPTKPEESEDSSEKKSPGKRRRTSPALSLKDVWFAWYTQEPRMWSLPYAETKHTRSTGKQ
VVAFLKLFLYDGFVLDKHSARYRDDVLETGSLAEKAMLAFLQQHNVTARGAQSVLKSMRKLHKAGQLNEHIGKYLQRQAQ
GLIMDPAPPHTCNTIGLVTMK
>Q47977_HALSA/18-186 transposon family T11 Pfam:PF01609
LSAQLHDPSGHAAIDATFFDRETASKHYCRRTNYRVQTLKTTALVDTETQAILDVHCSTGKPHDTQLGWQVARRNAGDLA
SLAADKGYDWMELRKKLREDGVRPLIKHRIFRPIDHAHNARVDGPRYRQRAMCETVFSTIKRTLGDAVRARAWFREFREI
VLKCVVHNI
>Q9Z3F3_XANCP/86-264 transposon family T11 Pfam:PF01609
LEHRLKKSGWRGPRQTGAQRCTRFLIVDAQSVKNTDTAGQKGYDAGKKVSGIKRHIAVDTQGLPHAIAVTTAEVTDRKGT
LQALERCQSNLTHVQSLLCDSGYTGVRFPDGAREILGEQLTVQIAKRSELHTFKVMPKRWIVERSFAWLEKNRRLWKNCE
RKLNTSLQFIHLAFLALLL
>Y1391_AQUAE/96-296 transposon family T11 Pfam:PF01609
LNRGYLKELIHRTAKEIMEKLQAKEFYCLIADGTGFGYAQAYELKWKKGKELRNVKSHVKTEVLVGVVRNKAIVVDINTG
KSYADENMLLRSMLKELGFRARYFLGDAYYGKSAGVLEEIKKLRMESIVPVRDTAHTRVRNMYRLWAKRNYEIRRKVYRK
NRYRVEQVIGIVKNRFGDRDNVYDFEIASLYVLGRFVLYNL
>Q9XEW1_ARATH/456-540 (hAT) hAT dimerisation domain, hATC (PF05699)
PLDMYLEEPVLDMVSFRDMDVIAYWKNNVSRFKELSSMACDILSIPITTVASESAFSIGSRVLNKYRSCLLPTNVQALLC
TRNWF
>PITT_05038 candidate novel mobile element ORF PITG_05038 Fam_9
MELADKLNYPSSGYKLKAITAFKIFVYHRDHALGDSDAVIPKIIRENKHVINFPKTNNKCVFRYIAWHTFQSPKKDPRRI
QAQVKEVFKRYCSFKGVKYTLSLFRSFKPIDLLQLDEVEDCFQLGINVYSMDVASGNVECIRRSDKGYEAMDILSFENHA
LYIKNFDMLQAKYQCPKCAMVFVSAERVKNHKKNQCELVNIESFPAEPTIYKPAQNVIRSLLTKYLIKNTDQYIDHFIVY
DFEAILKPTATQHGENTVFTNEHIPVSVSVADSLTEGVRCFVNDDPKMLLTEMFNYIGDVSAKIQQYNVNKYMSLLQKII
NAHGLTGMEVPGANSDKKYKMSDVESWIEEGKYASFFDFHRSLGFGKQRSDYGKLKQQLDQVPVFGFNCGRYDIWIKKDL
FAVIGTDNVKSVIKNPSYMCIATSDMKMLDITNYVPAGTSYDKYLTTYLGGCKCDDKIRCVCGLGKGLFPYEYITAFNVL
KQTTIPPKSAFDSKLHLLIWYNNLDVVPFTKAIKAQRELFKRFDLDMFADGVSLPGLSEKVMYQTCFNNLQYPDKKPANA
FRFPAKRMAGYKSQDAKAKRKFGMTLEHVNTLLQKQKYLCGLCYCQLTADTASADRINNNLGHTDGNILISCISCNTARK
DMSLRGFRYKKLLDFNADRLRNETKIRGAKICKKIIGYDANALYLWALGNEMPCGRLTTVEAYDGIIDDIKADKVFGFLE
CDIRTPEYLKQYFGEMTPIFKNVLIDCTNESVIGKHMFEHNEARKQSRAKPARKLIGSYFGEKILIYAPLLKWYLSHGLE
ITETYSFIKASSHKDFAPFMEAVSNARREGDVDKSKAMIAEMMKLVGNSAFGRSGMDMSKHKEVKYESSDKAIKNKIEHF
TFHGLEELNDACEITMKKRRLNNKNPVHLSIAIYQLAKLRMLQFYYDCINFYFDRSDFQYQEMDTDSAYIAFSCDNPFQD
CIKPELRTHFKEHKYDWFPRDYNTEVAKFDRRTPGLFKDEWSGDAMVSLSSKNYICYLPDETYKVKVSAKGIQQGSGRNN
GVLNPDGFETVVRDRITLQVLDDESKGPDIQRFQEQKKRFNGFKIASHNPNSWQIDLAFWKKRPILTAININSRLGDNGS
EFMNLQAQELFKPKTIEHYNNEPGDHGTMGRIERFNRTLKQRLTKMSPKRITQKLITDVIENYNTTFHRSIGMTPNEAKG
KVMNADLSHNQVEADRIEKEFDVGSSVLYRLKKQTFDKEAARWSKAAPNDLKMVNTETTDAVINRGDILEAEKILDHKTT
RSGKYKYLIKWLGNEPDSWEPQDNLQLINKNRKSMLEKEYWAKKTHK
>gi|116205832|ref|XP_001228725.1| Cre-like tyrosine recombinase (crypton) CHGG_02209 [Chaetomium globosum CBS 148.51]
MAPRKRRAPAPAPADYQSITVALSPGTEQPSGSHQKEPLTAAAPARLWPSAAERGQHVDRAIVNNAELHANSQNILTMIR
AARPKNTTSAYEPKQEEFRRFCKRKQYQDGETVREDKLLLFLVEEVVHRPLRSRSRKAAEDIPLSETRLSWRSVRSYITA
ITDLYRAQKALGMNTYPSPREDNAREYIKSLQRRDAEQQKANYADKGRDTLLDGYSEEDLKRIAGELWGRTAQSAECHLR
TLVDLLLGHYMLTRGGDRRALEISDLFTFEFAGEGPTRCMPLIITTRAGKQNQHGRLETASALRSRDPLICVLGAIAFYL
LFRWDLTNEPFPEFENRAQWYDIRLLKSTDASPTSEFAYNSQRDWVIKAFAYAGIQSIKKTHVGRSSGAKTAELKGISEA
QIQRAGRWNQEQMVGCYLNSLSRKFMRTMAGHPAQMGCFEIRRARIPPPGSLLPLIWPDLNRWAGKFGPGPGQVNDLAAA
GFTTLLFYLREVILQDSALLMRQFPDCAVWSHPVFQHKDYAPYAGRVLALIEEDERPTELAILTQALPALTDYLKMAEAR
REAQMTELSAALTAEIRTAKEQLAGAYQSSLQTFLTESVFQLKSATRPVPVPAPAPALASTPLVPLPQRLGEVVAEGEGS
VYGSAPLLSVSRSASPGAAGLAEEHSLEAGAEAGVEPPRYRMSRAVKTVRDLWARVDRWPPGRPFDYGTRQPVGESMASR
PSGRSAVVFLTARSHPGDPASCPVAANKRGIGHASPYIDSNSWPLGS
>Ps128130 (Crypton) Tyrosine recombinase-like protein, Cre-like
MQGVNTSHQSTAHHSNICPLADRTLGTSMSLQDLAPANSQRALQTAINAFGRFVATQGVSMDFIAASLADDKSGAVFVKL
MDRFGVHLAFVEGRGGKPLAKNSVMSYYRHVKNWLLDTYPTHRATIEKKLLKMGQTLERHCLKRIEGGMVKKAPACRKED
LRILMVGLYYDATSPKDYQDAALLALMWYAFGRASDLGFVVKGNLSVSADGVVFVRLIRVKTSDEQCISLFPDKNSFITC
PLHAIAMALVMQDAPCAQLLDHPHLAASGDESMTAPVDNDDTPSEPPQKKRKLPEENMKIHAYVNRVVKTASAAQAKAVP
TANLTSHSFRRGGAQHANGDPLLSAQWIFDHGSWNMTATNKAFAYVFNTTSEDQKVARVLSGWDSSKEPPVPTLSWLDSA
SRQQALSLGNLLFQPSVCTQDPEKKLNARVAEVLTAALIQHFPEVLERYPMCPYATRMRECLMALGLPKAQVLAWSSELQ
AKVAQKDLEESQDDTEAFTREEKLINHQNCIIGELIAMNRALTERVTQLESQREVGQGDSSTSLPAPVVAAQSHCEDSAT
VSKSCGSKALPKGPAAIWFEWYAKTLRMWDVCADRQKKSAYKHTVNCMKLFLPNGFALDPSAPDYTNQVVRTGIEAESGM
YRFLEEHGVKSKLGSGVLKQLRKFFRESKLNALVDAYRARVAVAGVTDPASKETQELFTRK
>Q8S6T7_ORYSA/601-687 (hAT) hAT dimerisation domain, hATC (PF05699)
ELEVYMDQPLLEWDIKDKSPFNILHWWSLKQHELPILSRLARDVLAIQVSTVASESAFSAGGRVIDPFRSCLDPEIVQAL
ICTKDWT
>Q9LSK4_ARATH/514-605 (hAT) hAT dimerisation domain, hATC (PF05699)
DGEDLFMELKLLKDVLPKEITKPVEVLDFLKRMDGCYPNTWITYRILLTIPVSIASAERTFPKLKLIKNYLRSTVPQERL
NGLALISIEQEL
>Q48369_9LACT/94-272 transposon family T11 Pfam:PF01609
IRQALVFKEVEGMSVSIIDSFPIPLCQPIRNFRSKGLGDYANVGYNATKGQYFYGCKCHALVSESGYVIDYTITPASMAD
SSMTEEVLSQFGTPTVLGDMGYLGQSLHDRLELEGIDLMTPVRKNMKQKNILFPNFSKRRKVIERVFSFLTNLGAERCKS
LSPQGFQLKLEMILLAYSL
>Q56007_9SYNC/96-318 transposon family T11 Pfam:PF01609
HRAKLKHQKFGYWIIAIDRTEWKGRNIFMVSIVWGTHALPVYWEVLEQAGNSDLKTQKRLLKPVLHLLQNYPVLVLGDRE
FHSPKLADWLASMGVSFALRQKKDLHFQQGWGQSYQMLKEQGFQPGSLQFYQGVLCNKGDELGPFNLAVYWQRKYRNQGP
KEPWYILTNLSTLPQVLAVYRCRWGIEQLFKDCKTSGYNLEEAKVNDSRFLALILLITMAYTW
>TH11_HALSA/117-314 transposon family T11 Pfam:PF01609
VFDHLVEQAALRGLLDLTYCIDSTDVRAMPADQDASKCYDPTDDEYYHGYGCTIVSTGQKIPIAAEFTESKQAPEETAMR
VTRDALAVAKPIWMVGDSAYDTLDWHDHLLAAGVVPVAPYNARNTDDPKDIEYRVEDRIEQHSEDVQLKQSTLDETYNRR
TGVERTNESVKDCGLGRTHARGRVHARAQVFLALCLRL
>Q9Z3E5_XANAC/68-336 transposon family T11 Pfam:PF01609
RTLQAERSMIERDMAHWLLRGDQPVIVIDWSDLKPDKSWCLLRAAVPIGGRTLTLLDMVVAGKQQGSPGAEKRFLQQLRR
MIPDDVRPILVTDAGFRTPWFRAVSAMGWDWVGRLRGRTQVKPQDVPDDAAQWIDSRRLHALASNRACELPPMQANRSDP
LDCRLVLYAKTRLGRQQRNRRSPAKVSRASSSLKAAAREREPWLIVASPQLQAPSAKHLVNLYARRMQIELAFRDLKSHR
YGQAMEDSLTRRGERLQILLLLNTLATFA
>O52240_STRSC/150-396 transposon family T11 Pfam:PF01609
IEREQRRAHRAAARAEPVRSRRRAIAVDGKCLRSAKRPDGSRVFVLSAVRHGDGITLASREIGAKTNEIPEFQPLLDQLD
DADLKGAVVTADALHAQRDHATYLHERGAHYLLTIKNNQRGQARQLHALPWKEIPVIHRDDARGHGRHEQRLVQVVTVNG
LLFPHAAQVLRIQRRRRLYGAKKWSSETVYAITDLPAEEASAAEIASWARGHWTVENTVHWCRDVTFNEDKSQVRTHNTP
SVLAAVR
>Q57520_VIBCH/82-342 transposon family T11 Pfam:PF01609
INPVALQRSFIAWMKNCHTLTDGEVIAIDGKTLRGSYDRSKGKGTIHMVNAFATANGMSIGQLKVDSKSNEITAIPKLLD
LLDVKGCLITIDAMGCQKKIAQKIRDKEADYLLAVKGNQGMLEQAFDDYFRMDMLQDFDGSSYSTQEKSHGRIETRVALV
NRDLSVLGDIEHEWPGLKSMGIVASIRQESAVATEQDVSIRYYICSKELEAQTLLEATRSHWGVEVMHWSLDTAFCEDNS
RIRADDRAEAFARIRQICLNL
>Q52136_9PROT/21-226 transposon family T11 Pfam:PF01609
MRKQGVAAGRPNRPSDEPPPDRQISLTDPDSRLMRRSDAHEFRQAYNAQAVVCAEGSQLIVTTDVVATSADAPSFADTVL
SMEDTIGLPKTVLADTGYASGQAVRKLREKGIDPLVAIGRPCARRPYDFRPRPAEREPRRITEPWRLAMKDRLETTEAGD
LYRRRKQTVEPVFGIIKSIMGFRKFSLRGLAKVTTEWTLVALAYNC
>Q9XAG8_STRCO/78-243 transposon family T11 Pfam:PF01609
CAPGLLKTLRDHEPDFVLLDGTLAECDRVGDGRADYSHKHRRHGVNVQVVTDPGGRLLWLSPALPGRTHDLTAARTHRII
RICERQGVPIVADLAYQGAGPWLTTGIKRKPLQELTPTDKTRNRALAAARAPVERGVARLKSWRIFRRSRCSPNRMTSIA
KAVLTL
>Q52511_PSESX/67-256 transposon family T11 Pfam:PF01609
INQHLASRGLLLKEGTIVDATLIAAPPSVKNREGKRDPEMHQAKKGNQWHFGMKAHIGVDATSGLVHSVIGTAANVADVT
QVDQLLHGDETYVSGDAGYTGAAKRPEHAERDVIWSIAARPSSYKQHGEGSVLYRVKRKIEYAKAQLRAKVEHPFQVIKV
RFNHRKVRYRGLEKNTAQLFSLFGLANLML
>T231F_BACTI/97-385 transposon family T11 Pfam:PF01609
VFSLLLQQKICEQTYISNQLLSHFKRIRIMDATMFQVPHTLEHIYPGSGGCAQTAGIKIQLEYDLHSGQFFNFQVGPGKN
NDKTFGTECLDTLRPGDLCIRDLGYFSLEDLDQMDQRGTYYISRLKLNTNVYVKNPSPEYFKNGAIKKQSEYIQINVIQI
LNQLQPGETIEYQQAYIGDKQQLFSRLVFHRLTAAQLQKRLKKIAEKEKSKHRTYSEKSKLVAGLNVYVTNAPWEWVPME
QVHELYTLRWQIEIVFKTWKSLFDIDHCRTVKQERIECHLYGKLIAIFL
>O48730_ARATH/19-208 transposon family T11 Pfam:PF01609
VNQQIFLGDLQLDPDELPLLITFLYCVGALDGTHVPVRPPSQTAKKYKGRKLEPTMNVLAICNFDMKFIYAYVGVPGRAH
DTKVLNYCATNEPYFSHPPNGKYYLVDSGYPTRTGYLGPHRRMRYHLGQFGRGGPPVTARELFNRKHSGLRSVIERTFGV
WKAKWRIVDRKHPKYGLAKWIKIVTATMAL
>Y4ZB_RHISN/71-297 transposon family T11 Pfam:PF01609
LAGQLDRQTRREGRAMLRLIDSTPIPLGKLCGWAKSNGRIRGMKMHVVYDPDSDCPRLLDITDANVNDAQIGRTIAIESG
ATYIFDKGYCHYGWWTAIAEAKAFFVTRPKSNMGLKVVRQRRIKVAEGDGFTVIDDATVRLASKGDSKLPIPLRRLTVKR
ADGDTITLLTNDRKRPAVAIAALYKGRWQIELLFRWIKQHLKIRSFLGNNDNAVRLQLFAAMIAYAL
>gi|47230770|emb|CAF99963.1| (piggyBac) piggyBac transposase [Tetraodon nigroviridis]
TPLELFQLFFSTTVIDTLVKHTNANGRKKKQEHQKQWRTITRQDMYSFLALVLYMGMVPLKAMTDFWKGSRLYSLPFPSS
VMPTNRFLAISRSLHMNDLAVEAANDLKKGTPGYDKLCRIKPLYEQILAACYTFFHPYQHISMGEQMVATNARIGLKRCI
RNKHAKWGIRLFVLADSSCGYTLNFFVDAGKDPEPTGKGRSHDIVMRLLNVPFLGKGYKLYVDNFYTTPSLFRDLLSRKI
WACGTLRPNVAGYPQKKENDMTDKTPRGTIRWMRQGELLFVKWLDTRQVTMCSTIHKAYSNDRTKRKVKNAKGEWTMKSV
PIPGCIKDYSQHMGGVDLSDALISYYNVLHQTQKWYKTLFYHCVDIAAVNAFILHKEMCKLQDQPELQQKAFREQLILSL
AG
>7000001773487539 (helitron ORF) [Phytophthora infestans]
MVRSKRKRTREELEEALRENERINATPTQEEKEARKRRLNKRRRKRCDLNKVLQALSVNQEVSETMEVTEGQAGRSEERE
EKAEESDPVIFQRRFAAQMEAAYQDGATGVALFTVPVTPQATVQEAVPVSAAKRARERRANRTLSQADRDRTRDAQRART
RRANMSLSQRNIARQKGAERQRVRRARLREEQLQELREQDRAYHEERRAELPSQDREVERELNRQQHTDRRARQTAEEHQ
QELERVRTRRQCVRHGHALISLADFDASMITGDHVVNGRHKLPATTVCPVCNAWKWPGESTISCCLAGRVKLPPLHPAPP
KLLQLYGDPEFRRQIRAYNQAFAFTSIGASCSNRSFQNVHQDESVAGTHGVYTYRIQGAMGHYLGSLLPHIDRRTGARVA
PKFAQIYIVDPDMQRRAERRLGIFADLDRVALLDIEKMMAEHNPLAQRFLHFGQQVRQHNTETPVDLVFRLHDNSSRPRT
HNRPTVSEVAATLIEDGNLAQPRDFLLFTRDQRLLRLYETHADYDPLQYPLLLPYGEKGWTYTDEFANGAEYRNKKAMSL
REHVAFRLHQKVDDQSALHQGGRLFQQWCVDQRAKCEQVQLRWVADNQKTLRADQYRGVQDALLNEDTLALAEGEVLLSE
YDRVQNRLVHPDQDGGNRGRPTHFLNQVGKRIILPASHLGSPRSMYKSYQDSMAIVREYGRPDVFLTETCNPKWDEILEA
IPSDIQTAQDRPDIVARVWQQKLQATLDDLNQGVLGRVRARIYVVEFQKRGLPHAHVLIILADEDKPRTREIVDKMVCAE
IPDKDTNPQLYDTVMACMLHGPCGPANPSCACMKDGKCTKGYPKPLAEVTQANANGYPVYRRRRRQEGVLKFKGREYDNA
TINQWVVPYNPYLSQKYNCHINVEVCTDITAVKYLYKYVYKGPDMAILTVEEVRGGQQSARREPNEILRFLSARYISPVE
ACMRLLDFTIQGKTHAVTQLTVHLESGQTVCFRETENPEAVLERGSHTMLTRFFELCASEEPQNHIARTMLYQDIPKEFC
WKAPEKGQPKRWVRRKQYQAAVGRMIHVSPRDMERFYLRLLLCQRRGPTSFEDLRTVNGIVCPTFQIAAREAGYLENDNE
WVSCLREAAEFQMPYQLRQLFVIILVYSAPANVGVLWDRFFADLSQDFARKHQALMDPFKSALIEFETLMSIQELLQASG
YAVADFDELPQLGSFPTLIREALRQNGLLRRELTGYDASSLEAIVSTEDQLNESQRVAYDQIIEAVECPDEGKKFFFVDG
PGGTGKSTLLRNILAKVRLSGKIAIAVASSGIASLLLMGGRTAHSTFKIPLKLNESSTCGIRKNSHIQELIKHASLIIWD
EAPMAHRHAFEAVDRTLRDILDNDTEPFGGKVFVLSGDFRQILPVVKNGTPVETIDACLKSSRLWPQFQTFRLTENMRVR
TADTADTAKEMAAFSEFLLQVGEGRHDVNPSLGNDYMKIPRDMLIENPPVPEDEDQEIRPGVIPRGMDRIIDEMYGEINN
PEVATDEYFANRTILTTTNAIVHRINEAVTDRLTGQAREYMSSDSVQDDGDGNFFEQEVLHSMNISGMPPHKLTLKVGMP
IMMMRNLNPDLGLCNGTRLRIVALKPHVIHATIMTGERQGQHVLIPRIVFISDGDIRSFPFHLRRKQFPVQPAFAMTINK
AQGQTVQHLGLYLATPCFSHGQLYVAMSRVTSRSRFKALVEYPKLEEEDGVYAQNIVYRQIFGSE
>Pi_model.supercont1.23.5.1 1385 (hAT) hAT family transposase [Phytophthora infestans]
AVLLTKEVEMEIADILPASFGVMLDGWSFQSEHYVAVFAAFEHDQRSEKVLLALAPIVDEKAEDQSAESHVLFLRGILPF
LKRDTASICYLVADNCSVNSRLADLLQVPFIGCASHCLNLAVKLYLLDDEPLMEQLQQLMRRLRCLSKAAALRQKTDFRP
VLRQTTRWTSTLKMIGRYLAIRSALDTDDNDVVALMPTRRQEKRLQELRSDLGDFQSATMKLQKDLLTILDVRDIFDALV
VKRPVVDKYLAADASIIKSPAVEEACVLTFAGKDNELTGEQELMLLPFETVPAADTGSEDAGTARPQGFADRVLKARKKQ
RTARKKFRGVEYIPPTSNTVERLFSIAKHTLPLHRHGMLPMHLETVLFLKLKRHFWKAATVTKVV
>Pi_model.supercont1.4.10.1 1233 (hAT) hAT family transposase [Phytophthora infestans]
MNRAPLIAGQRSSSAFYSNLFADAMSVRSRRRFRMRRALNLRVVCAVKEQDCYFHQRRDHTWKMGLQKCTVAIRPFAYGM
QAEAVDAYIRIGKVPQLEVSNTFGQLVQLPKSPDVESRCVRVLGGNAARLTRAEKTVLTPFKSTGPPAVSEDEDDGESSF
GQLLQKRRRLAAKEIKYKLLHAIPATSNVVERFVSVARTTFGQERHRLQPITLEMILFLRENAGYWDAQTLDX
>Pi_model.supercont1.2.15.1 1304 (hAT) hAT family transposase [Phytophthora infestans]
ICLLVREVETVIAGILPKSFGIIFDGWTFRSEHYVAIFASFRHDGKVQNILVAMAPLVDDEVDDHTARSHAKFLDTILSY
YGRSKANITYIVGDNCSVNGAVATQLQVPMVGCASHRLNLAVNLVLSGDDELITKIQKLLYKVKNSLLVSAKLRRKTLLR
PVPQQDTRWSSMFVMVNRYFKLKEFISDDIEERLADFMPTRRKEKQLKTIINTINFDIDRGNEDELGFVQRASISDIVSS
WSANTQPFSKSRVPSPVSFSQLVSSSESSARCRYALIMKPARTQPSKSPVRRSLHSSSTSRFKR
>gi|156542745|ref|XP_001602496.1| (helitron ORF) [Nasonia vitripennis]
MPRRKAQRTEEEEIYQNQRRQRNAENQRLRRQAARNLINDELRNARNQRDYLGSMDILCTHCNAKHFLSEKVAHKGLSFN
DCCSHGTVALDPIPAFPQELSQLLDGTHEKSNFFENICYYNNSLSFASFNANLVQFQSRRPAPYCFKIHGQIYYQINTAF
YPTENENPAFGQLFVIDQDEAIEFRMNQEPRIDKTTISILDKIIRENNAFAKSYAMMKQELEDQRLLMNAGWHRNLERVH
INNNDNNRRVTRMAYIKYKIAIRQSEFNPLLLGCRLFQQWVVDSYVKIEKDRIQFCKDHQKEIKADSYQGLHDYLQNSVN
DINGQVGKTVILPSTFIGSPRHMQQCYQDAMALVNDKGKPDIFLTMTCNPKWPEITENLLPGQQVCDRPDIVARVFHLKK
ERLLDFVIKKKFFGDVACYVYVIEFQKRGLPHMHLLITLTHSYKITTPNTVDRFISAEIPDIIENPRLHEIVMKNMIHGP
CGNWCMVDNKCSKKFPKHFNDETSMDENGYPNYRRRKNDITHQLPNGHIVDNRWIVPHCPKLLEIFDCHINVEIVASIRS
VKYLYKYVYKGHDAATVIIGECNNEGIINHDEIKNFIESRYVGPVEACYRIFSKALQDKSHAMVRLPVHLPKLHSVIISN
NATDIPQNLAQASSTLLDYFKLNLENIDARQYFYKDIPSFFTYKKEKVDGLTVSKWNIRKKHFNCIGRMYSVSPTQIELF
HLRLLLLHIKGATSFDDLKTVDGVLQPTFTATCLALGLIEDDEEWARAMEEATIWMMPRRIRHLFVRILIHCNPIHPEEL
WNNYKNAMSEDFSRTHSIDISYQLAYAHINTLLCNEGRTLSDFPTMEQTVIEMDTLPETSDAPLEQIILHAAKTDDCNTN
NCIYINGPGGSGKTFIYTTVYNLLSAKNIKVCSMAFTGIAATLLPNGRTVHKTLGLPVPLYNDSSSSIKVQSKEGLFLKE
TKVFIWDEAPMAPRYALEIVNRTLKSIMNNDVPFGDKIIILGGDFRQLLPIKVRGTRSETLSLSIKYSESWKHFTTYNLS
ANMRVLPNEVDFAQYLLSVGDGTLNDANDNLTLPQQCIMEPNNNVAQIVFGGFIAEKNFEKMSKCAILSARNIDVDEINK
QVTNLLDNNSEQIYTGIDSTENCNNGELDEIILPEYLNSLNPSSLPPYELRLRKNCIVMLIRNISINEGLCNGTRLRVID
FSNHLLKCKILTGDETNDIVFLNRISLYCENEYPFSFKRRLFPVKLAFAMTINKSQGQTFQRIAIDLRRDVFNHGQLYVA
MPRVRSWDSLKIYLGDHPIENLQLED
>T32N15 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LSKGFIRPSTSPWEAPVLFVKKKDGSFRLCIDYRRLNRVTVKNKYPLPRIDELLDQLTGATCFSKIDLTSGYHQIKIAEA
DVRKTAFRTTYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREEKLF
AKLSKCSFWQREMGFLGHIV
>F23H14-3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
FIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRK
TAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSWEAHQEHLRAVLERLREHELFAKLS
KCSFWQRSVGFLGHVI
>T13P21/T6B13/F26C24-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
IRPSSSPFLSPVLLVKKKDGSWRLCTDYZALNALTVKERFPIPTVDDMLDELNGAVYFTKLDLTAGYQQVRMHSPDIPKI
AFQTHNGHYEYLVMPFGLCNAPSTFQALMNEIFWPLLCKSVLVFFNDILVYSSSWSEHIQHVSEVFSLLQQHKLVVKYKK
CEFGQKELEYLGHMI
>gi|9294530|dbj|BAB02793.1| (helitron ORF) [Arabidopsis thaliana]
MWFNERINKKSNSENPKFSLCCGQGSVKLPFLKESPELIKKLLKGNDALSRHYRQFIRIYNMIFAMTSLGGKVDKSMPKG
RGPAMFRLQGGNYHQIGSLKPKDGDYAKYSQLYIVDTENEVENRANVIGKGNNGSSTKGKKNLNKQLIDAIIKMLNQVNP
YVEKFRSARERIDSTNDEPFHMRIVSDRKGTDGRLYNMPTAGEVAALIPGDFVSQMPVRDIILEKKSTGRLKRISQIHIS
YLALQYPLIFCYGEDGYTPGIEKCYKSGYTKKKKCISMRQWYAFRIQEREDESHTLLQSKRLFQQFLCDAYTTIESNRLA
YIKFNQSKLRCENFNSIKESASSGSTTMSEEGNQVLIPSSFTGGPRYMLQTYYDAMAICKHFGFPDLFITFTCNPKWPEI
TRYCEKRGLTADDRPDIVARIFKIKLDSLMKDLTERHLLGKTVASMYTVEFQKRGLPHAHILLFMAANSKLPTADDIDKI
ISAEIPNKDKEPELYEVIKNSMMHGPCGSANTSSPCMVDGQCSKLYPKKHQEITKVGADGYPIYRRRLTDDYIEKGGVKC
DNRYVVPYNKKLSLRYQAHINVEWCNQNGSIKYLFKYINKGPDRVVFIVEPIKEATSSDTTAPVVESDTTEKKKDEIKDW
FDCSSYISFSPARYVSASEAIWRIFKFPIQHRSTPVQKLSFHDKGKQPAYFDAKAKMADVLERVSNEDSQFLAWLTLNRK
NAVGKNGKRARDCLYAEIPAYFTWDGENKQFKKRTRGFSLGRINYVSRKMEDEYYLRVLLNIVRGPQSYDDIKTVNGVVY
PSYKLACFARGILDDDQVYINGLIEASQFCFGDYLRNFFSMMLLSDSLARPEHVWSETWHLLSEDILIKKRDEFKNQELT
LTEAQIQNYTLQEIEKIMLFNGATLEDIEHFPKPSREGIDNSNRLIIDELRYNNQSDLKKKHSDWIQKLTPEQRGIYDQI
TNAVFNDLGGVFFVYGFGGTGKTFIWKTLAAAVRSKGQICLNVASSGIASLLLEGGRTAHSRFSIPLNPDEFSVCKIKPK
SDLADLIKEASLIIWDEAPMMSKFCFEALDKSFSDIIKRVDNKVFGGKVMVFGGDFRQVLPVINGAGRAEIVMSSLNASY
LWDHCKVLRLTKNMRLLNNDLSVDEAKEIQEFSDWLLAVGDGRVNEPNDGEVIIDIPEELLIQEADNPIEAISREIYGDP
TKLHEISDPKFFQRRAILAPKNEDVNTINQYMLEHLDSEERIYLSADSIDPSDSDSLKNPVITPDFLNSIKVSGMPHHSL
RLKVGAPVMLLRNLDPKGGLCNGTRLQITQLCSHIVEAKVITGDRIGQIVYIPLINITPSDTKLPFKMRRRQFPLSVAFV
MTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKTGLKILILDKEGKIQKQTTNVVFKEVFQNI
>MOD1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LAAEIIRPSISPFSSPVLLVKKKDGGWRFCVDYRALSKATVPDZYPIPVIEELLDELHRATMFSKLDLKSGYHQIRMKAA
DVEKTAFCTHEGHYEFLVMPFDLTNAPATFQSVMNELFRTYLRQFVLVFFDDILVYSSDEETHLKHLEAVLQILLQNKLY
ANEKKCHFGSTRISYLGHMV
>Pi_model.supercont1.18.10.1 1611 (mutator-like) mutator-like transposase [Phytophthora infestans]
VVANLKSFDIHKSQAMACTICPGGDHKMRYRLVECSSASCTDASPVRCTWRGKMLTYLESERASVFEFGEHTSASSSLRI
LVRKKLTQVQKAFCRDLVQNHLRPMRIRHAMARKFATPLEELPALKTVQNFVNHYARTQMENHDRVQDLTKWVREHAYDA
SKSMMEPVTFTWDLDNAGLPLIGNGSDHKPFLVGITTKALMLRLLVPPESFILHLDGTYKTNQMDYPVLVVGVSDRSRRF
HLVAMFVMSQETEPMFQAALLSLRRLYLWITGNHLTVQYAMADGDRAQFNALASVFGDNPRFCFLMCFFHVMKHVQERVK
LLSSDAQARVLREVYDLHFARDQGHYMEMLRCILGRWMADPTLISFAQYFYGQWVVRPFRTWQEFAKSCGFASTNNPAET
FNALLKRDYTLRRRLLMGTLLCELSGCCQDQSSSTRAFDFAVVPAQNLAQRVSEMVRERYLGVAEGHDAEYVRSGASCIL
RIISLPAGRVSVAPNKRSEEAIAVSAQMGINYARKEYEGEPDDGWPVNVQTQKCPCDYFFAFGACVHLLFALRVTAHVDS
SGREVLINRRK
>Pi_DIRS1_pp  DIRS1-like polyprotein consensus [Phytophthora infestans]
MAGDVATAFRNISIHSNSVYLFAGLIEEENALVIELSAPFGWTGSPGFYEIFGGAISHVHGCHTNAASPAGFFNYHWVDD
HINVAADIGTTCSDIDRSLRYAMVAILGADAINIEKFTPWKTRQRVLGLEFDVDEVVALLVKIDKARRIVASAYVRSSLT
RKGYRSLLGSLRHVATCIRAARPFLQRLRHREAQLHRFQGVSVTDAMREDLLWWWLILHSPQLNGVSLEYFNALPPPDVV
VEMDASDVGLCALDVLAKGALTYQFTPSELDLIAECKNGEANGFDINFRELLSCAFAVHTWGPRWNLIGGRPRHVRRNPR
AKVMIRLLSWWEASYRLRFSASHVAGTDNTRADAGSR
>Pi_gyp_gag GAG protein encoded by 15kb gypsy element [Phytophthora infestans]
MVRVPGSFGDSGFHRESQEDAQVKIEPGEEASSEVGSTKTLLNETRSADRWSFGRNSVDGREVDPDPDLEEKPLYPPQVP
SGTPADLDASQDPLTKQGKVKAKRYAFADSPVKPTPYLNPSPLVEETRKKTKTSKTTRKKMQAPESEEDQAGSRSSWSDK
DLEFVYRHQALRDFLHQDPVMQILNPRQIEDPREPVRAPTKTANKLVAVKDLLRLLTESGIVAGVFDAEDIFELDLDLIV
SATRDLFARVKSITGERSRTMDPVSSPRISQAASSNYESAAEDESDTSSEPRRMTLGPSGASMLEARARIRGQEAPVNVK
ARDPVRPTRDLTQSSQDRARSGKKPVGLSSDQARGNRLTDPVPPVDQTATGSSDTSSGTLQRHFEAAMNRFLAEQGMRAP
VPQVQVLHEHGARDVEMESVEGDNSHDEFDPDDLDGPSTSAAVVATATAGAGGSSMIQRVRISAISDLKEFTGKDQDEDR
ARTWISKVKSALMRDQASDAEKCLTFADLLAGPARNWYRQLGRSTRNKWPDLLRSFQTQYCGLGVSVARQYYHARRRSDE
SPLEYLHRLNVAGLRAKLKIKDGGSKVLREHVDHFIETLGDVDLADRLTLLRLPDADELEEVLRAVDRAKHRQKKAAVGS
GKYRQKAPTPTAPARRVHQVTAPDSGTESGSDGSDSDPEDYRRVCLTASNDRTAKTGDNSRPGDTVPGDRGMYRSRDLMD
GAAQVRCSQCGSRKHTESGCWKHLVCEKCGKKGHPGDHCFYVCRGCGEIHDVGKCPMEEFYNQIRQWFDPAKHRGMLPEV
AEKMLN
>Pi_Etransposase  transposase consensus core protein sequence, possibly related to IS4 [Phytophthora infestans]
MPSTASQVFDRLNRQWEDETSNLVVSHENYGDVARHIEEEASDSGSPILSEYIAAGGDSALKGMTNFSAPELDALWALVE
SAVTITWTQGRGRKPSVSGKDAMFITLTVLKHFDTWQKHAIDFNIGISTLEKMVHRVIQTIEPVLYSQMVKRVRMSEQME
AGNTFTNYPHALYATDVKFQPAYRPSGRFAEQKVYFSGKHKLYGFKIECSVTPPGVAVDVSDHSPGSTSDLTMMLDRLTI
HRQMLRKEDGTTAEMGADPTQFPHMWAVLVDKGYQGAGRVLRTIQPKKQPRGGTLDRDDISRNRAISSDRVLVENYFGRM
CMLWKATYATFKWNENRFDGVARLCVALTNFHVGLMPLRAHDSEHYDMVLSKYQSMGERVRTQRARAQRLYRARQQQRSR
PGPYSVRSRLSTSQRETQYESDDSLNHAL
>Pi_cop_gag Copia element GAG protein consensus sequence [Phytophthora infestans]
MPKPMKYTSEGVPKNWQGKDWQTYKWAMMNVFKEDDLKDIADGTLTKDMLSTASAEDQEKFNKKQIKIMRMIGTSVPPEI
LQQIRDKETGSEMWAELCNLFEGKQNEAIKAYTIRRLENDLWDKKLASGGDANLHLCKMFSIKSELVGLQDTIEDSTMVD
MLLESLPDQYEF
>PITT_21754 novel transposase F long IRs and 8bp TSD [Phytophthora infestans]
MNREANEGASVDAEVEPAEPAEGAPEDGEVEPAEPVEDVVSTELLFEQARQQLANDVGSVPRRGERTTCFYKGYKYCKAW
SSSRKIVYRCSKFRQGCRGKLEFTIASMAYAAVKLHTCRTEAIANVVINVEDQMKAQADLLAIEHVAWPVRQVWEELRRQ
FYSADNPNVVRGLSEQQVVRRVHRARSAHYSSNVHGSIEIPPLSLALDEELSFFQFHYVTINRNDLNKPSRLLGWAHPSL
VALLRYHGTTLFVDGTFRCVPQGYAQCVVFMVHDRASGVFVPVFYILSTSRTGDAYWDMIHFIVQSTGQQLEPAEIVCVF
EAPLLDVLQTQFPNAIVLGCLFHLKQALRRAMKRYAIPEEECLIAMTRGVLDTLTVIDPAHIERGIKWVKREIKLRCAQA
GVTYSTEKWADFWGYFNRTWLEQYTIDVWNVFGMNNELVARTNNPLERFNRERNTRFPTPHPSMATFVTVIKAISAEYVR
RVADVPRGRARRVSREVIQLPQAVDITSDVDSDVDPPLEEPEAVATPAADGSTLTSATL
>Pi_model.supercont1.2.5.1 1429 novel transposase Pi-A IRs plus 9 bp TSD
MRRWFKAFPEVMLVDATHNTNESRYKLFSFMVNDVYGHGQYVHHSLMENESAECLTDAIRSFKFHNSSWEKVKVIVIDKD
MGELGLLEDEFPGVKIILCHFHLKKYIRAEMVKREYGGPSSFDKDQVEDAVDMMRLAASPEEYIKYLKYMYFLLDRVQLR
DSDTIPEPKHPFLEYFMRNWDSMKERWVLYARSDVPHPGNHTNNRLESSWGHIKDILRADMALDECVDTLMFLQAVAEME
YAKKITDVGQMRYEGADEELKILARDVSPYAYRLIEQQYWMSKDRKTHYEIKELQPNLFLLTGDNRTSVYHVDTSCSCVF
MRTMLLPCRHVMYWRLMNDKTAIPFRNIASRWQLVCKLNQPAAEEDIPDTNFACKAFQICDSAMAARNHQVLNGTTKYKH
ALQRGMSIADIMSRNGTHVFGEMMVALEK
>Pi_model.supercont1.39.4.1 1560 (mutator-like) mutator-like transposase [Phytophthora infestans]
KKHKVTVSNTSICAVCTDPSPHTMRYRVFSCSSATCADACVAPLRCRWKCKTLVCCKSGIVNIYEFGLHEVKGNDPPTGG
LTLEQKRTARQLAVNGLKPARIRNALAVGASAEKIPHLSKVQSFVTYCRKTELNNTDDLDILEEVIRAKAYTGLEEESSA
FSFSSNMNCNGDINIGEGTDTSTFFVGFTTKTLLKRLDRDPHSFILHFDATYKLNQVDYPTFVCGISDHSRSFHLVALVV
VSQQEERHYASALASLRAIYARFLRKPMVVHYILGDADGAQYNAMASVFEDCETEILMCFYHVIAKVHERTRYLLPGKRS
LVLADIFYMHYARNASEFHAKKTSAVRRWLADPDVERFGEYFLQQWLTGKFVKWQCFRTPVGWATTNNPVETFNAKLKKT
YTLRERMLMGSLLGQLQVCCRMESVSGAAFHETSTASSRLRRRATALRRQQLLVETPSFDDSSNFVLVVSKATPRIYVKP
KRKSMEVVDVAVQLGANAARMERDEQPEEGWSVDLTTRTCPCKYFFHKGQCVHLLFAFNTRFGTDQPGKRKLFNRSR
>Pi_model.supercont1.32.3.1 1574 (mutator-like) mutator-like transposase [Phytophthora infestans]
LLMDFKSYKTEKSELKTCHCSSQQLPHNMRRRILACKSTCCAEAAPLGKCPWRGKTQTCLLLGEVALMECYGHLTELRSP
RSALLTSTMKEAVEGMTAQGLKPQRIRNELVRQFRLDETSAPSLPTVQHFAQHFARTRLGGSDSFDDVQAQVERMVFTPG
QQDGEPFTFTWETNADGIPQVGSGTDDESFIVGLTSERLLRRMDRDPNRFVLHGDATFKLNQAGYPVFVVGISDTSRSFH
LVALFVISQRRISDLLQVYASLQKVNQNVVGRPLCVRYAMSDADDAQYEATISVLGSAQSSGSHKESITASPHLVPLMCY
YHVVAKVFQRSRSLRPSVAAKVLKDVGDMHYSANNETFLATKERVLAEWDSNHELEAFRSYFVRQWLTGRFTRWQMFHTP
RGFATTNNPVEQFNRTLKRVYTLHARLKMGSLLMQLSACCRAEGMTLKPFSTSVAPSPSLQRRMRELRRERKLYVPLPPR
NSMAYLLQDDFEAGAGDVVRVVSTRCERVLDPATGRRSEAILTTAKMSSCNARKELEGMPASGWAVNVPERTCECLYFEK
FTTCVHLLLIL
>Pi_model.supercont1.16.12.1 1489 novel transposase Pi-A IRs plus 9 bp TSD
MRELFSRFPEVMLIDATHGTNASKYKVFSFMVHDAFGKGQFVQHGILQNERAPTLLTAIEEFKKTNASWTKLQCVVIDKD
FTEMGVLKKALPGVRILLCQFHVIKYLREQVASAEYELSAWQKSQLRSMFPLLVYAVTEREFEKHRKYVTHILSIGALST
RAEISDDTTNAALPSDGNHLGSDGNVETELGPDGNVSNMQVNGPALSSAQDRSDGFESYLRKNWDNCKPMWCAYERQSAV
TLGNNTNNRLESSWKQLKDTMSAFMGLDECVASIICYQARSQKSFEAQTNKILVVHNPKYDREMSLLANLVSHHACELIF
EQYSFAMGGNAQYEFNEATPGIILIVNISGRDDVLDEPRAEYAVNTINWECSCLFMSTRLLPCRHVFYLRKVLGMETVIP
TQLLPSRWMLSSLRSEVALEEIPGKAFSVETVLCDKARPWDANRKYREAKYLASEISETMSGFGMPQYRAALNILQELSR
LFKRGECEE
>Pi_model.supercont1.21.5.1 1431 novel transposase Pi-A IRs plus 9 bp TSD
MRRFFEAFPEVLMIDATHNTNDARYKLFSFMIHDVFGHSQYVQHARMENESAEGLSDAITSFKSFNATWDDVRVIIVDKD
FGEISLLQSAFPAARILLCVFHVVKYLRTEMAKRVYGLLDREKIEDAVHMMLSAQTEGEYEIGRKYLYYIVEGKQILKDE
EVPEPEHAFLQYFDSNWHQCTEMWSGFGRVDVPHLGNTTNNRLEAAWGHLKDVLKPTLMLDECVDTLMFLQSMAELEYAK
KMTDVGYMRYGGADAELEKLAKEVSQHAYQLVEKQYRVANDRKTHYNIIELQDQVFQPSAGGDPDRKYHVDTRVRWTYRC
SCAFMRTELLPCRHVIYWRLLSNKSPIPLKHIHSRWSLTSPANVPVDDEPVSEENVSSSFRVSSSALKASRHKKLNGTSK
FRTSHETATRIADIMSRNGTPIFKKMIEALQ
>Pi_model.supercont1.4.11.1 1483 novel transposase Pi-A IRs plus 9 bp TSD
MRLLYEQFPEVLLIDATHGTNRSKYKVFSFMAHDTFGKGQFIQHALLQNEQYATLLTALEEFKSNNPAWSRLQCVLVDKD
FTELSVLKEAFTGVTVLLCQFHVLKYLREEIASADYGFYKTQKEQLGGVVSLLVYAKTEAEYEKHFKYMVHLASIGFSAA
TSTDVASSDAQPAVERSRAAVVGSESGGVESESGAVGSTVGSASASDVEHPFVAYFRRNWDNCRGQWCAYKRQNTVTLGN
NTNNRLEASWKQLKEWVDSFMAVDECIASIMYYQTLQEKLFLSEIYKTVVVHHPEYDSKMSLVANIVSEHACDLIHMQYS
YALGPAAYIFYEGCPGVYFVKSVCEDDDALDELNAEYCVTKRDWSCSCLFMSTRLLPCRHVFFLRKALGQETIIPTLLLN
KRWLVSNVRSALENSTSSSAENEPSSFEVKTVLPGRERPWDSNRKFREALPIASEICDTMAGLGMTQYRQAMQYLQEVVG
RFK
>Gypsy-8_AA_gag#LTR/Gypsy 478-2814  [Aedes aegypti]
MNYYHINEQCLEEDEINYELRIRGYSTDGSLETRRRTLRRLLRESEGMEVKQTWYSIEDEYVGIPMKLQQIELAIKNRVG
AGCLSRLVHLHKRVRRYRVISFDQREKQRMLLNAVSQMALNYFGVNLDNLGQAVPLMTLVTGPEETNVVSSVPESRDDLA
EGKRLGVFPKQQSLNEDLILFSPMPMDGSRVDPRRHTFPVAGPQAFRGQAIQPILVPQPQAFDPQVEDDVGGDCESPHFK
SSIQVQLNRRDPAKSATPIPKDENAFEVNPFERPNVVTDMGQASLRQNPPLSNISPVLQDCFSVDGSRDSSSLSPQEQTG
KKISLNEYVHVSEIETYIKSCISQILTSDVVDNLAGRLKTVGLKEQNGLEIPYAWSGRPREAESPITHSFAQPKPSIPIK
NVHGFPSYTGQKVGNPSTEWRPPIPNVSSSSMVPPLYPTTTPEPFPNPYRRNDLLNQQVHLPPNSSTFLGPLGTGNPLSN
NFVPNHYLRQRLPHQTCNIIEKWPKFSGDSNAVPVVDFLRQIEILSRSYQVTQEELRMHAHMLFKGDAYVWFTAYDDKLD
SWPTLTAMLKMRYDNPNRDRAIREDMRNRKQKPNELFSAYLTDIEAMSQRLVRKMSAEEKFDLVVENMKMSYRRRLALQP
IQSLDHLAQLCYQFDSLENNMFLTKPAMKPAVLNQILAEEELEDYEEVSEEEDATVMAVRPKMSRKDANKSSGSGITSES
QEAGQPLCWNCKNFGHMWRECSQRKTLFCHICGHNNTTAYQCPQKHNLKPREPADSKNE
>Copia-64_VV#LTR/Copia 27-3959  [Vitis vinifera]
MGTAKFDVEKFTGKNDFGLWRLKMRALLVQQGLQDALLGEKNLPSTMQEKQKIELLEKAHSAIILSLGDTVLREVAKAKS
VAEVWLKLESLYMTKSLANRLHKKIKLYTFKMTPGMSIEDHLDHFNKIILDLENIDITISDEDKAILLLTSLDASYTNMK
DAIMYGRDSLTFDEVQSILHARELQKQEESKEESGEGLNIRGRSEKREKKGKNSKSRSKSKTKKFKCFICHKEGHFKKDC
PDRRQNTVKKTVNEGDAAVILDGYDSAEVLNVAEVDSSKEWILDSGCSFHMCPIKAWFEDFKEADGGYVLLGNNKHCKIL
GTGTVRIKHYDGIERVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVARCSLTVMKGTIKNGLYTLIGQTVTGKV
STVLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQLDYIHSDLWGP
SRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIAR
HRTVRYTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVF
GCTAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRDVTFNEQDMSKQTPAKDVEGLDQLQFEVEHET
LQPEKSKETSSKTTQEEIVHERQNEPTQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINS
NEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVV
KHSSIRLLLAFVAHEDLELDQLDVKIAFLHGELDELIYMQPPEGFGEGIKDGQVCLLKKSLYGLKQSPRQWYKRFDKYML
DIGFNRSSHDGCVYFKLTEDSMVYLLLYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRL
SQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYM
SCPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTVFGGAVSWKANLQSVVAL
STTEAEYMAMTEAVKEAIWLKGITEELAMYRGKVVVYCDNQSAIHLAKNQSFHERSKHIDVRLHFVRDIIAAGEIGVGKV
HTKDNPSDMLTKSLNVTKFKHCLNLINMGDC
>Copia-63_PT#LTR/Copia 17-4134 via tfasty with Copia8-PTR, 75.7% SW:3587, 1 frameshift and 3 stopcodons. [Populus trichocarpa]
MVSEPSSLTRLETFFISMATGSNPTSLSESAASSLPLITINISSQLPYKLTSSNYPSWRATFLTILIGYDLMKYLDDTLQ
CPPTPDAHSSTSVVALHAYWNRQDQSLLHAIFASVSEAVMSLIAITTTSRDAWQHLAHLFASKSRARIMQLKEDLTLMxR
GSCTVSEFLHAVKVTANKLSLIDAPVSDDDLTLYVLNELGFEFRDMVAPIRTRETVLSFAELHDLLIGHEQYLKRMDAHS
SSTLVVTANTSQRRSSNPCFRNNKNHFKQNFSNTTSPKRPFVVCQICDRPGHTAKNCIKLQSSPTANYTTSSAPSKDKWL
LDSAASHNITSDLANLSIHSEYDGQDEVVLGDGTGLHVTHIGSTTVSSPSRPLNLKETLHVPLIHKNLIFVHKFTLDNNV
VVEFHPFFYLVKDSKTGAVLMCGRCEDGVYPVELCSPSLQAHAITLDGTHTSLDCWHHRLGHPSSQTLSSLINSYHLPVS
LSKSSLSCVSCRCNKSHKLPFSVTSLTSHNPLEYLYADVWGPSPVPSVDGYRYYVLFVDHFTKYCWFYPMHNKSNVSSIF
VQFTTMVENQFSRKIKIFYSDNGGEFIKLRPILAIHGISHFTTAPHTPQQNGTVERRHRHVVDTVMALLHHASAPSTYWT
YALATTVYLINRLPTILHSRQSPFEVLFGRVPDYKKLRTFGCQCYPWLVPYRANKFQSKSQPCVFLGYSLTQHAFQCLNI
HIGKIYLSCHVTFDESIFPFKLAPPSADPHFATQCQASSPPSLVPPVCMVPLDTPITTPLVHDGAATVPPSHTPGMPSSS
PLNNSSSSVSPLPAAPTLLGQTHPMVTRAQNNIFCPKQLSVTTKHPLDPSLEPTCISQALKDPKWCKAMATEFTVLVSHG
TWRLVPRPSATNLIGCKWVFMIKRHPNGTVDRFKARLVAKRFNQRPGVDYTETFSPVIKPTTIRLILSVALSHNWSLKQL
DVNNVFLHGQLNEQVFMHQLAGFIDQSHPHHVCSLQKSIYGLKQEPRAWYTALRSSLLALGFFNSQSDSSLFIYAQDGIL
LYVLVYVDDLILTGNNNSFLQHVVNSLGATFSLKELSDLHYFLGVEVIPVQQGLFLLQNRYIHDLLSRLNMAGAKTVHTP
MSVSAKLLLNDGSAWLxTCDATEYRRTIGSLQYLSLARLDLGFAVNRLAQFMHKPSVMHWQHVKRLLRYVKQTIHFGLLL
RHQSNPVLRGLSDVDxGGDLDDHKSTTAYIIFLGDNLISWRTRKQKVVARSSTEAEYRALATAASDIAWIKSLLDELGLT
LHAPPLLLCDNVGATQLSLNPVLHSRMKHIVIDLHFVRDFVHRGQLRVAHVHTDDQLADLQTKPLARSRFTLLHDKIHVA
DGTSILRGRTRKI
>Copia-66_BRa#LTR/Copia 127-4171 via tfasty with Copia-62_BRa, 82.8% SW:4179, 4 frameshifts and 2 stopcodons. [Brassica rapa]
MAAVERAFGGTNIKHHIPVVLDLDVFNYDAWRELFLTHCLAFDVLGHVDGTSVPQDDDDLPWKKKDGLVKLWLYGTLAPP
LFRNLFGSFKAGGTARDVWLRVENQFRNNKEARAIQLDNDLHTKEIGDLSVHDYSQSLKSIADLLENVEAPVSDKTLVMY
MLNGLNEKYDHIINVIKHQKPFPSFEDARNMLEMEETCLKKPNKVTIAHSDHSSSSTALVVSDPTPKQSNNQQCNQQRNT
GLHSTTTGSNLSLQRYRGRGRFNNFNHQYRQNYGNWGMPPQYWPPQYNNWQQPQPTPWMMPPSNSFNQRPFTPRPNTHEA
NLAEYGLQPTTDFAESFNTMTLAEPSSNWYMDSGASSHLASSSGILQSVLKRNTGNSVVVGNGSSIPINSSGNSFIPCKN
RSLALKNVLVAPQIVKNLISVRKFTTDNWCSVEFDPFGFSVKGLQSRKTLLRSESSGDLYNVSSSLNKSRQHYSFVAETP
SLWHRRLIHSNNDTLRSLISSRSLICNKDNISFCDACQLGKHIKLPFYKSSNKSLAPFDLIHSDLWTSPVLSLSGIKYYV
LFLDDFSHYLWVYPIRNKSDVFAKFLHFSSLVKTQFKSSIKAFQCDNGGEYKNKNFFEHFATNGINVRYSCPHTSQQNGK
SERMIRTINNAIRTLLFQAKMSPTYWVEALHTAAHVLNILPSSAIGNKTPHTLLFGQTPSYDHLRVFGSLCYPNINHSHA
HKLSPRSRPCLFLGYPSQHRGYRCLDLQTNRIIISRHVIFDENSFPAAKSETTNNTYGFLDPNDQPSPVFKSILESSLVP
HVPAETVTPALPQASISQPARVVNPAPARMTTRGQAGIIKPKKIFNLYTSSVSRLPTTHQKALADPNWNPAMADEYGAQV
KNKTWSLVPRPHGANIINSLWLYKHKYDADGVHRRHKARLVANGKSQAAGVDYDETFSPVVKPSTIRTVLNLALSKGWEL
KQLDVQNAFLHGHISETVYMHQPPGFADKEHPHFVCKLNKALYGLxQAPRAWNARFSSYLHRLGFVSTKSDASLFVYSCG
xDIAYLLLYVDDIDLTGSSPALLSRITASLKTEFPMTDMGPLTYFLGIKVEYTKAGILLSQQSYATEIIERAEGGDKLKN
PTQYRSLVGALQYLTFTRPDIAYGVQQCYLFMHDPRVQHLTALIHIIRYLQGTNTLGLQLYKSSVTSLTSFSDADWAGCP
DTRRSTSGYCVYLGDNLISWSSKRQQTVSRSSAEAEYRGVANTVAETCWLWNLLLELHVPITKATLIFCDNVSSVYLSSN
PVKHQRTKHVELDLHFVWEKVALEEVKVLLVPTAFQYADIFTKGLPSSMFTTFRDSLTVRSSDVQPEGG
>Copia-68_PT#LTR/Copia 116-4271 via tfasty with Copia-2_CP, 81.5% SW:4323, 2 frameshifts and 7 stopcodons. [Populus trichocarpa]
MATENNSFVQPVIPRFDGHYDHWAMLMENFLRSKEYWDLIENEIPVATEEAIETQHKLIADLKLKDLKVKNYIFQAIDRN
IIETILNKETAKAIWDLMRLKYQGSIKVKRAQLQVLRREFEILGMKKGEKVNEYFARTLIIANKKKTHGEKIEQSVIIEK
ILRSMTLKFNYVVCSIEESNDLFTMTIDELQSSLLVHEQRMHGQKEKEHVLNIINSENDRGRDEYKFEERGRGRSKGRHP
FNKALMECFNCHRLGHYQYECPRLRNAANYTELDEVEEMLLMSYIKMNNSTTQEYVWYLDSGCSNHMCGIKSFFSDFDEK
FRQSVKLGDNSKMMVMGKGNIRLQVGGMTQVITEVYFAPELKNNLLSVGQLQEKGLTILIQKVMCNIYHPRRGLIMxSRM
STNKMFVVLASVMPQVTTCFQTVTEDNSHLWHCRFGHLSFKGLRTLIYKKMVRGLPLLQASSKVCSDCMVGKQHCEVISK
MSLWRASQRLQLIHADICGPIKPESHSHKRYLINFIDDYSRKTWVYFLSDKFEAFDVFKKFKALVEKETGNSICCLRTDR
GGEFTLLEFNQFCSTNGITRQLTTSYTPQQNGVAERSTVMNMVHSMLSGKQIPKEFWSEAVNWAIHILNRSPTSVVKEVT
PEEAWSGNKPFVHYFRVFGCIDHVHIPDKRRSKLDDKREKCILLGVSEESKAYRLFNPVSKKVIISRDVVFIENEKWEWK
RSNEEIEVDLLEWGDEEEIRTQESEEGVNAEIEEVDRxGFNSPSGDLNTNAEGSLHPVQGRNRKEPSWMQDYVLGEGLLE
EDEIENLVMFTALEDPACFEDAFKSLKWREAMKLEIKAIEENETWELTTLPKRAKKIGVKWVYKTKLNEKGEVDKFKACL
VAKGYSxQHGIDYNEVFAPVARWDTIKMVFAFAAQKSWCVYQLDVKSAFLHGELNEDVFVDQPQGFTKRGEEHKVYKLRR
ALYGLKQAPRAWYNIIERYFIKEGFEKCYCEHTLFVKTKDGGKILIVSLYVDDLIFTGNNEDMFERFKESMKKEFAMSDL
GKMKYFLGVEVIQDHHGIFINQKKYAHEVLERFGMLNSNxVKNLIVPGSRLSKNEGGAAVDTTMFKQMIGSLMYLIATRP
DLMYSICLISRYMERSTEIHLQAAKRILRYLKNTAELGIAYKRGGEEELVGFVDNDYAGDIDDRKNTSGYIFMLGTGPVS
WSSKKQPVVTLSTTEAEFIAAAYCACQGVWLRRVLEKLGNIQSKCTTIFCDNSSAIKLSKNPCPLxRLNSLQQHTVHARK
FGxDEFLKSxEYIQSKCTTIFCDNSSAIKLSKNPIMHGRSKHIDVKFNFLRDLTREGTVELVHYSTQEQLSDIMTKPLKL
EVFLKLRDRLGMCLKLVNLLQFCNSV
>Copia-66_Mad#LTR/Copia 1-4011 Fragment  [Malus x domestica]
ADIWNELKERFSHTNSVHLFHIEQEIHGSVQGNLNIGAYYTKLKSFWDERDALCALPTCACGAAKELMQFQQSQKTMKFL
MGLNESYAAVRGQLLLMDPLPAVNKAFSLIIQDEKQRAVSIHAPGRSSITDAAAFAVRDNMRNSGRNFSPRNSHLKCGRC
DATGHTSETCRAHLKCDYCNWRGHTIDQCRKLKKAKDNSDKGDYQDRRGSDSQGFNSKANHVDIKPTPPATSPSSYGLTP
EQYHNLLALLDKSQSKSTSNHVGTTSTMNDLSGRVFCASALNKGRNWIFDTGATDHMVCSPSLMTTSVPVYNRQVHLPNH
ALADVTHIGTVRLSNDLVLHNVLCVPSFKLNLISVSKLTNTSSCFVIFTDKMCLLQGQRSGKMIGTGTEREGLYYLDNVT
KTGCNSVSVVAPSSSQLWHQRLGHLSNKTLRAISPCVKNLNFCSIDDCLICPLAKQTRAPFPLSSINTKAPFELIHVDIW
GGYHVPTITGAQYFLTIVDDFSRCTWVYLMNHKSDARSYLITFIHLVETQFSTRVKVLRSDNGPEFFMTQFFSDKGILHQ
TSCVSTPQQNGVAERKHRHLLNVARALLFQSHLPKKFWGDAILTATYLINRTPTPLLHGKSPYEILHHKQPAYAHLRVFG
CLCFSSTHHHRPTKFDARATRCXFLGYPYGTKGYRVYDLQTGKIFISRDVIFHENVFPFSSSAAVSPVVFPHTQDTDCDD
TIIHPSLPLEQDSVDPSSSSPVSPASVSTPFLSPSPPRLKRPTHAPGYLQQYHVDINLPSRSVPSSHSALTTVAGTSYPL
SDVLTYDRLSARHRAFTTSISAAIEPSSFSQAIRDPQWRLAMEEELAALAANRTWSLQPLPPGKKPVGCKWVYKIKFRSD
GSVERYKARLVAKGYSQIEGLDYRETFAPVAKLTTVRLLLAVASVQQWHLHQLDVNNAFLHGDLEEDVYMSLPPGFGRKG
ETRVCKLHKSLYGLKQASRQWFIKLSCALXKAGYQQSKADYSLFVRNHDGKFTALLVYVDDIILAGNNIQAIEDTKSFLM
KQFKLKDLGQLKYFLGIEIARSSKGITLSQRKYALEILEDAGYLGAKPATSPMEQNLSLRKDEGQCITDPSSYRRLVGRL
IYLTITRPDLVYAVHILSQFMEKPRTPHLEAAHRVLRYVKHTPGQGIFLSARSPIQLNAFCDADWARCRDTRRSTTGYCV
FLGESLISWKSKKQNTVSRSSAEAEYRSMAATCCEVTWLKYVLQDLGIKHKHPVKLYCDNQAALHIASNPVFHERTKHIE
IDCHLVRERVQSGMIRTSHISTTKQPADIFTKPLSLHQFTTLLRKLGIINIHSKLEG
>Copia-63_MLP#LTR/Copia 133-4443 via tfasty with Copia3_XT, 59.4% SW:1425, 5 stopcodons. [Melampsora larici-populina]
MKIISHPMASSATDSQKENCLTGITSLRPPSEDSNYHDWEFKVELALDAVKLAYVLKPIAVKDRLNNWKEDNTKACTLIS
RSIEDGNLKYIKPHRCNAAGMWAALRVAHEDSATGGRMHLLHKLITTRMEVTDIDAHIDSLHKIYKRLDHLITPDSPCTV
DDIYTTSILTALPLDWLPVITPLMQREAVNSARVIRALKxEATQQKTSSDLNSPSDLVAARAYANNRFTTNNNRSGQGPR
RNTKFCTHCEHTNHDVENCWICQGTSRGSSSSNRGGRHSLSSHPNRQNAKAGKTSVLTLEFSKDEDDSNDNTTEVTQAKS
AKVITANHVSTMDWKIDLGCSLTMTPNKSALTHLEASRKTIQLADALSISSTHSGRIHLPMTSNLHHHRSLLVPGLQEPL
LSVSALCDDGFKVVFDNTKCSFYxSNNQDLSNPVGVGYxRGNLYYLPSKVDSSHSTSTSTTKTNQTLPNWHNNLGHIGLK
PLKSFLKKHEIAPTVMNEIDVQKCPVCVKSKMACHSFKSRAEYRADSVGELIHSDVCSFKVPSREGFKYFVTFINDFSKF
TIIYPLKLKSNTSSCFKVFCSKFELRISTTIKKLRTDNGGEYMSYEFKNYLSESGIEHFPGPPHSPQLNGVSERTNRTIC
NHIRCSVTSSGLSKSFWVDALRYLAHSLNSIPCYTPLGFFSPSSLISVSPIDPTRCHPFGCEVYYKVPEANRKKLDPKFI
RSIFLFYLPDGNSYVVWDTTNSMPVKSCDVIFNVNVFPSLEKLSPKPPSSHDAHIPWPSQSVPRPSARYRRLSVSIHNPA
RRPLSPSAFKDLPSMPQIPSPASLPSLSDHCPSPPQTPPPLPPRPTPSVSVIPCRRPSTPPTRKPSKSKIPRTQLSNQPA
RVPSADLPTSPDQPPVPxRSGRNRAAPDRLGNFVKSACPAGEDVSDTPKTWKQLLRSPNKSKWLKAADDEYLSLVGMSTW
KLVPRPDKRKIIQSKWVFKVKRRVDKTILKLKARLVAMGYSQVEGVDYNEVFAPTTRLETLRLVLSMIASRKWSGRQVNI
KTAFLNGHLDEPVYMTQPPGYEDPNFPDWVCEVTHSIYGLKQSPRQWNLKLHKVLILLGLTQSRHDPTLYFELVDGKVKG
LVTVHVDDLSVVGPDSFVNDFIAKLSSHFEIGSNEELHHFLSLNITRDLSKNLCFINQAHYIKELHEKFLPTSHIKVTTP
TDSSFKDLLPKQPNDQSSPGHYQSLIGALMWVAQCTRPDISFAVSRLSQFLRDPLEAHWFAALRVLNYLITTSHLSLTLG
GEASISGYSDSDWAEDRHDRRSTTGYTYQWGSGPILWRSxKQATVSLSSTKVEYKALSDSCREGLWLGNLLSKLGVRPPA
AIPLHVDNEGAEALAKNPQHHSRTKHIHTCYHFVRECVSNKSISVLHVASKDMLADMLTKPLGCVLLQSHRERFGII
>Copia-59_BRa#LTR/Copia 72-4250  [Brassica rapa]
MGDLAVVAKSPKEGSPSIKCPMLNTTNYTVWSMRMKVLLKVHKVWETIEPGTDDGDKSDMARALLFQSIPETLIIQVGNL
ETSKEVWEEIKTRHVGAARVREARLQTLMDDFNRLKMKDTDTIDEFSGNLSELSSKSSQLGEEIEEPKLVKKFLSSLPRK
KYIHIIAALEQVLNLNTTTFEDIVGRMKAYEERIQEDDTQEDQGKLMYANMESQNHQESYGRGRGQGGRYNNRGRGRGRY
NGRGNWRQGGDWRQGRDMSRVVCFRCDKTGHYVNDCFDLKLKLQETQETDNESTREAEDLMMHEVVFLNEKNIVPSKFET
HSSCANVWYLDNGASNHMTGNREYFCKIDEKITGQVRFGDDSRIEIKGKGSILFITKDGKRKILADVYFIPDLRSNIISL
GQATESGCDVRMRDDYLILYDKEGNLLVKSIRSKNRLYKVTMEVESMKCLQLTEISESATWHARLGHVSTDTMKMMISKE
MITGIPNISVEKETCTSCLMGKQARASFPKATTYRASQVLELIHADLYGPISPPTAGRNRYIFVLIDDHTRYMWSILLKE
KSEAFEGFKRFKKNIEKESGAMIKTLRTDRGGEFTSQEFRSFCEDHGINRHLTAPYSPQQNGVVERRNRTLMEMTRSIMK
HAKLPNYLWEEAVRHSMYLINRVGTRTLKTQTPYECYKKKKPYVGHLRVFGCVCYAKSEAPHLKKLDDRSRELVHLGTEP
GTKAYRLYDPNTRRMFVSRDVIFTDYKTWIWNVKRSETLGEDEDISWPDLGVGREVTNEKKDNNGDSEDVEEEDDNSETE
EPETESQPLRRSTQQSIRPSYLDDYVLVAEINETERILLLLNEEPWDWNEAKHEKVWREACEDEITSIKKNKTWTLVDLP
LGCKAIGLKWVFKIKKNADGSIKKFKARLVAKGYVQRHGIDFEEVFAPVARIETVRVIIALAASNGWEIHHLDVKTAFLH
GDLSEEVYVTQPDGFKVKGSEEKVYRLHKALYGLKQAPRAWNIKLKSILKELNFSKCSKEPSLFKKETRESLLLVAVYVD
DLLVTGSNLEVIQEFKLEMATKFEMSDLGQLTYYLGIEVIQSKEGIVLKQERYATRILEEAGMEKCNAVHLPMDPGLKLS
KASEEEGKCNAVHLPMDPGLKLSKASEEEGISETEFRRNIGCLRYLIHTRPELAYCVGVLSRYMHEPKISHGAALKQVLR
YLKGSCSHGLLFRRDDKSGLVGFCDSSYNVDPDDGRSTSGHIFYLNMCPVSWSSTKQEIVALSSCEAEFMAATEAAKQAI
WLQELLGEITSDETAKTVLRIDNKSAIALTKNPVFHGRSKHIHKRFHFIRECVEDGLIDVEHVAGKEQKADILTKALGKI
KFKEMRSFIGVQDISKEVFKLKGEIVDLSLKLI
>Copia-58_SB#LTR/Copia 102-3659 via tfasty with Copia-7_SB, 1 stopcodon. [Sorghum bicolor]
MEEELCLVDSGTTNSILRETKYFQTLTKRQGNVLTIAGRDATIIGSGRAIIVLPMGTQITIEDALLYPDSKRTLLSYRDI
RQNGFHIETLADNNEEILLVTKNNGYGKQIVEKNPSFPSGLYYTYIKPVPHVAYKVIFQNVDAFKTWHERLDHPGVGMMR
KIISNSNGHELNIAKFPKSSDFMCTSCATGKLILRPSPVKIQNEPLKFLERIQGDICGPIQPTSGPFRYFMVLIDASTRW
SHVCLLSTRNHAFAKIIAQLIKLRAHNPEHQIQSIRMDNAAEFSSKAFNDYCMALGIQVQHSVPYFHTQNGLAESLIERI
KLIARPLLQNCNLPTSCWGHAVLHAADLIQLRPTAYHVVSPLQLVCGNMPNISHLRKFGCAVYVPISLPKRTSMGPHRKL
GIYVGYQSPSIIKYLEPLTGDLFTARYADCIFNEDHFPALGGDFKYQSECQEINWNAQGNSPSDPRTQETEQQVQKIINL
QHIANNLPDAFTDYKGVTKSSYPARNAPERVEVPIKTIQLPLPKKRGISTAAPKDNAPSKRPRKSRGKSSKSVNPSQPQV
GRHPIVDKNPTPGPNPQPGSTVHPNSDPGTSEHPDSIVLGNVESNNGVKEISINYIDSGESYDRKTTVVDMYFSTAIAEI
FLNDPDPKTMAECKKRLDWAQWKEAIQAEIASLTKRGVFTKAMPTPSKVFPVGFKWVFVRKRNENNEVVRYKARLVAQGF
TQRPGIDYNETYSPVMSGITFRYLISLAVQNHLSMQLMDVVTAYLYGSLDSDIYMKVPDGIQIPNPNANRNMYCVKLQKS
LYGLKQSGRMWYNRLSEFLLNKGYTNNDDCPCVFIKKSQTEFCIIPVYVDDLNIIGSPKDIEEARKHLKTEFEMKDLEKT
KYCLGLQIEHRPLGILVHQSAYIQKILEKFNMDKSYPNKTPMVVRSLELGKDPFRPRDVGEKTLGPEIPYLSVIGALMYL
ANCTRPDIAFAVNLLARHSADPTHRHWTGAKCILRYLNGTKDIGLFFTKNHDPNMIGYTDAGYLSDPHNxKSQTGFVFLH
GGTTISWKSSKQTLTATSTNHSEIIALYEASRECVWLRRMINHIQQSCGIGSIESTTIIYEDNSACVTQMQTCYIKSNIT
KHIVPKLFYPHELQESGEINILQIKSCDNLADLFTKSLPTSVFQKLVHGIGMRRLRDLPESGGDIS
>Copia-59_Mad_pol#LTR/Copia 2748-6329 [Malus x domestica]
MTSGKVSCLADSATTHTVLRERIYFTNFVPKNAPLTTLSGPSNLIEGYGKARIMLSNGTILTIAEALYSPRSGRTLLSFK
DIRDNNYHAETHVENGVEFLCVTSYEYGQKRILEKMERNPSGLYTTTIRPIECHYVAGPTTGTAHEITLWHDRLGHPGRI
AMRRILKTSHGHPLTRSLGSIHEIACQTCSMGKLITKPSYDKIRSNPPIFLQRIQGDICGPIQPPCGPFRYFMVLVDAST
RWSHVCLLSTRNAAFSKLLAQVIKLRAHHPDYPIKSIRLDNAGEFTSKTFDDYCMSVGVEVEHPVPHVHTQNGLAEAFIK
RLQMIARSLVIRTKLPIAAWGHAILHAAKLVRLRPVATQPFSALQLVTGCEPDISHLRVFGCAVYVPISPPLRTKMGPQR
RMGIYVGYDSPSIIRYLEPLTGDLFTARFADCHFYETVFPSLGGDKNVNVPNERRELSWTTPTLSHLDPRTAQSEAEVQR
ILDLQSIAQSMPDAFTDLARVTRSHIPAANTPAKMDVPNVRRTTLLEARDANSGDPRTLAASQSSAPTQKRGRPLGSKDS
HPRKRKTTAQGPEEPTVNPTIAYSFYPTHEEILDYGSVLEETNPPPENREISVYYASLDDVWRRNEMIVDDALAFAVATE
IMLSDDIEPRSVDECRRRADWSNWKQAIQVELDSLAKRKVFGPVVPTPPHVKPVGYKWVFVRKRNEKNEIVRYKARLVAQ
GFSQRPGIDYDETYSPVMDVITFRYLISLVVSEKLDMQLMDVVTAYLYGDLDTEIYMKVPEGLTLTGSNISKPRNTLSIR
LRRSLYGLKQSGRMWYNRLSEYLTSQGYVNNELCPCVFIKKSHSGFAIVAVYVDDMNLIGTPEELARTASHLKSEFEMKD
LGKTRYCLGLEIEHCSDGILVHQSNYTQKVLRRFNEDKAKPSSTPMVVRTLDAKRDPFRPKEDDEEILEPEVPYLSAIGA
LLYLAQCTRPDISFAVNLLARYSNAPTRRHWTGVKDIFRYLKGTTDLGLFYPYESSSDAAPYAHRVDSRLVGYADAGYLS
DPHKARSQTGYVFTVGGTAISWRSTKQTLVATSSNHAEILALHEATRECFWLRAVVGHIRSSCDLHPAVNAPTTIFEDNA
ACIEQLKKGYIKGDNTKHIAPKFFFTHQQQEHQKIEVTQIRSQDNLADLFTKSLPKATFQKLVHGIGMRKLSEL
>Copia-62_ST#LTR/Copia 45-4499 via tfasty with Copia-2_AT, 68.7% SW:2646, 3 stopcodons. [Solanum tuberosum]
MASSSSTTPVVPSSVTIIPGSSLPSSVPSSVTTIPSLSFPSSVSTIAGSSFPFFGLPPPVSIDSQTLPNFNSVAALATPN
VTNLVTIKLGSVEDYLTWRTQFTSLLLFHELMGFVDGSIPHPSPLLGDASGNHQPNPLYCSWIKIDQSVHSWLFATLSRD
VLIDVHLLPTSRDIWLSLHRRYMDASQAKSIELKRQLTTLxKDDKMSIDQYLRTAKQLVDSLAAINSPFPSQDFIDHVLL
GLGKEYDTLVGIITHFPGHLSLEELRTKLLLHEQRLQRFKELDSPITHQTFAVNSVSTTTQDSDSQFGSGRGRGRSSSKS
YGRGGKGCGFGGRGQQPQINSSKHNTRISATGQPQLSNGGTYPVSYNSYYGGTNSPSTGVLGSHPSTIIYQICGSLDHTA
LQCTNRFNHAFVSNDLPKSFATMSVGETNDATWYLDSAASAHMTSSECNFLHKTPYTGHNRVLVGDGKLLNISHTEYIQF
PSTSRPLHLRSVFQVPQLQHNLISIKKLCEDNNCVVNFDSSSVSTKDKASGQTLIQESSKGDVYPLSSKLAHSPSQALIA
LRQSGDVWHHRLGHCGAxVLDSLRENNSIRLLNLFQNNCVSCRLGKAHRLPFHLVEHCSSFPLEIVHSDVWQSPVLSNLG
YRYYVIFIDDFSRFTWLYPMKHKSEVFMHFCAFQKQVENTFNTKIKSFQSDGGGEFDNNVMVSHFSNCGILFRKSCPDTP
QQNGVAERKHRHILEMVRTILSDATIPSKFWVDAAFYVVYTINKLPSTVLHGISPFEKLFQTPPDYNFLKVFGCECFPYV
SSRTANKLNPRSVRCVFLGYASNYKGYRCLDPKLGRVYINRHVTFHELAFPYSELSPDPISPTLHLDPLVVVSPLNSCVS
HTIPFSSISSQVDSAHSSSSSGSLDSSNDLVIQTLDPSSSIGMSHGGSSPHTCAFAPSTSTSTVVAHPMQTRSKSGISKP
KQLFSLSSIVSHIKPSCFSQAVKNPKWQTAMADEFNALLANQTWVLVPYNPNMNLVGCKWVYRIKYNSDGSVERYKARLV
AQGFHQQPGIDYHETFSPIVRAINVRIVLSLAISHSWSIRQLDVKNAFLHGVLCEEVFMKQPPGFIHPDYPHHICKLTKA
IYGLKQAPRAWFHRFSTFLLDNGFISSKSDSSMFIRHYSSGILILLLYVDDIILTESHVSIVDDFIKCLSRQFAMKDLGD
LYYFLGVHTTRTSTGLHLSQQKYVSDLLLKFHMHTCKPVHTPFASRISLSLVDDELLSDPTEYRSMVGALQYLTLTRPDI
AYAVSVVSxFMYASRTTHLHSVKRIFRYLQGTITHGLFMSALSSTSTMVAYSYADWAGCPDSRHSTTGFVVFLGSNLISW
RAKKQPTVSRSSTEAEYRAIAYTVAETTWIQHVLSELGVYLCELVRVMCDNVSSMYMTHNPVFHDRSKHIDVDFHYVRDK
VAQGDLVVDYVPTRLQFADIFTKGLSSSQFSFLRDNLSVISARSD
>Copia-60_PT#LTR/Copia 73-4188 via tfasty with Copia8-PTR, 82.3% SW:4379, 2 stopcodons. [Populus trichocarpa]
METTTAPSTDSTHSPIITINAAITINEKLIPSTFPQWHAQFEVLLIGYDLIDFVTGTHKCPAIDAQNFTASKAANSHWIR
QDKLILHAILASTSTTITPLLSAYKTSNEAWTALTRLYAGKSRTRVMQLKEDLTLSTRGSRPVTEFLQGIKVIADELAVI
DHPVSDDDLTLYILNGLGIEFREIAAPIRARETSLKFEEIHDLLISHENYLRRLEQQSANSFVPTANYSNRWTPQLSSNS
RQSKWRPPVSSSSPRGHNGTHRNGSFNSGHRRFKPKCQWCDQLGHTAKQCPKMSASDFSANCAASSQPKNHKWLVDSAAS
HNMTTDLSNLTINSEYDGTDEVVIGDGSGLPVSHIGSLSLKTSNHVFHLRDTLCVPTIHKNLIYVHHFTKHNNVYIEFHP
TYFLVKDRITGALLLKGECEDGVYPFPEQLPSIKTNIIAYVHERSTFDGWHKRLGHPSPKLVNHLIHAFSLPTNKTGSSS
LCTSCSQNKAHRQSFSTHGLTSTTPLELIYTDVWGPSHDLGINGFKYYVIFVDHYTKYIWLYPMTHKSNVQTIFPQFRNL
VENRFNTKIKSLYSDNGGEYVGLKNYLSVHGISHYTTAPHTPQQNGVSERRHRHLVETGLTLLIDAHMPLKYWPYAFQTA
AYLINRMPTAILNNQSPFAKLFNQRPNYLKLKQFGCLCYPLTRPYNKHKLEPKSKSCIFMGYILSQNAYLCFEQTTKKIF
TSRHVIFHESTFPFQQSGHNTAPSSPSVEQCSSVPISLSKLPFDSPSPSTSLDVGTEVLxSFEGGSSSAPSPLQVSNSTS
PLSLNPSPSLEFFASIVPANATVRMHRMTTRSMNGIYKPKKSFLVTKHPIPSSLEPTTVTATLTDSRWCEAMSSELTALM
CHNTWQLVPPPTDCNIIGCKWVFRVKWHANGSVDRFKARLVAKGFNQRPGLDYKETFSPVVKSVTIRTVLTIAVMQGWTL
RQLDVNNAFLHGHLTETVYMKQPPGFRNSEHPDYVCCLTKAIYGLKxAPRAWYSALKHALTEFGFLNSKSDSSLFVFHTG
STLAYCLVYVDDLIITGNNTTFVASIVDHLGRKFSIKDLGSLHFFLGVEVIPTAAGLFLSQHKYIRDLLAKTSMDGARDV
ATPLSTSVPLQLDDGSSSVDSTEYCQVIGALQYLSLTRPDISFAVNKLSQFMHHPKQTHWTATKRLLRYLKNTIFHGVTI
SKTSSSTLTCFSDADWAGSLDDRKSTSAYLLFLGNTPISWSSKKQRAIARSSTEAEYRALATAAAESVWLLSLLQELKFC
LSQPPLLLCDNLRATHLSFNPVQHSRMKHIQIDKHFVRDLVAKKILNVQHVHTTDQIADLLTKPLSRQRTEFLRDKIGLS
DGSPFLRGRIKE
>Copia-68_SB#LTR/Copia 2406-7228 via tfasty with Copia-7_SB, 1 frameshift and 2 stopcodons. [Sorghum bicolor]
MATKESDAQVSSKKEFAELALDGHNFPTWAMDLKVSLSLRGMYRAIDTPKQGDAPLSEPSKYHALYIIRNHIHSDLKAEY
LMEEDPRALWLALQQRYEQQKAVILPEATHEWNHLRIQDFKSVNEYNHAMHKLSSKLRFCEKEPSDAEKIEKTLSTMLPA
QMILQQQYRERGFTVYSDLIKTLLQAERHNELLIWNSNQGPVGAKPLPEVHANAQKQTPKDANKNGNPRSSKGKNKRKGP
RKPRGTKGKGNNSKSKDKSSTCTKCGCYNHPTKKCRTPKHLVELYLHSVGRGRSNQGRSNQGGQPSEAHFNDLAAPGCSN
PAPAGPSNTMAPLPPDGMANDSTNNMIIEYNSDDLFGDYNxIDSHLTILISSFAFGIVIIDNLFLLHSVxCSLTYAQFNI
NKCLYFIYIFMLRISFSFIFSIFIDCTGVNPMDEEMCLVDSGTTNSILREIKYFQTLTKSKGNVLTIAGRDAVIAGSGRA
IITLPMGTTITIEDALLYPDSTRTLLSYRDIRKNGYHIETHHQNNEEFLLITKDNGYGRDTLERIPSTSSGLYYSYIKPV
QHVAYKVIFQNVNAFQTWHDRLGHPGIGMMRKITSNSVGHSLTNAKFPQSSDYTCTACATGKLILRPSSLKIKVEPLNFL
ERIQGDICGPINPLSGPFRYFMVLIDASTRWSHVSLLSTRNHAFAKIIAQVIKLKAQQPEHQIKSIRMDNAAEFSSRAFN
DYCMALGIQVQHSVPYVHTQNGLAESLIKRIKLIARPLLQNCNLPTSCWGHAVLHAAELIQLRPTAYHATSPLQLVHGNP
PSISHLRKFGCATYVPISPPKRTTMGPHRKLGIYVGYKSPSIIKYLEPTTGDLFTARYADCIFNEDHFPALGGDLPHHKQ
CQEINWDAPDIPNSDPRTSESELQVQKIINLQHIANNVPDAFTDYKGVTKSYNPARNVPERVEVPNKTTQLPSKRGRSTA
ISTDTASSKQRKRKTKSSDPVNVAQPHVEKHPVEVQPSHPTSTVHSITDAGTSEYPDATILGNDDASERVHEISINYAET
GESFDRKTTIVDSYFSAMIAEILENDPDPKTMAECKTRSDWNQWKDAIQAEISSLTKRQVFSQVIPTPPQVFPVGFKWVF
VRKRNENNEVVRHKARLVAQGFTQRPGIDFNETYSPVMGGITFRYLISLAVQNRLSMQLMDVVTAYLYGSLDSDIYMKVP
DGIPIPNQNTNRNMYCVKLQKSLYGLKQSGRMWYNRLSEYLLQKGYSNSDDCPCVFIKKSQTGFCIISVYVDDLNIIGHK
QDIDEACKHLKTEFELKDLGKTKFCLGLQLEHLSTGIFVHQSAYVQKVLERFNMDKAYPSKTPMVVRSLGLNTDPFRPQD
EGEEILGPHVPYLSAVGALMYLANSTRPDIAFAVNLLARHSAAPTKRHWTGVKQILRYVNGTRDLGLFFQRGTNSEMIGY
TDAGYQSDPHNGRSQTGFVFLQNGTAISWTSSKQTLATTSTNHSEIVALYEASRECVWLRRMINHIQQSCGLKAITAPTI
IYEDNAACVTQMETGYIKSNINKHISPKLFYPHELQQKGEIDILKTKSCDNLADLFTKSLPASSFEKCVKGIGMRRLRDL
QSSGGEIS
>Copia-84_Mad#LTR/Copia 154-4365 via tfasty with Copia-87_Mad, 2 frameshifts. [Malus x domestica]
MASPSATASPSESVPIPNPSSNPNSSPYTSLTIQNIGSMVPIKLKRSNYLPWCALFAPILRRYRLLGIVDGTEPCPPPLM
PDRTLNPAFEIWYEKDQNLLIWFNSTLSEEVIPFTVGVSSSRDLWLKLEQRFGGISDAHVHQLRSRLQSIQKGSQSMSDY
LQELKEISDSLTAAGAPISDRDLIAATLAGLPDDFESFTDSIMLRLSSTSLDELHGLLLTKELSMIRRKKAASSNITEPF
HALSVQTQPPLLPTPPQAYVIQNQPLQQSFRYNSNRGKNNRFSNNRGNRGNYRGNNFTSSFNRTNTAAHSRGSSSGPRAP
CQICGNSSHEAIDCFDRMNPEISGRIPSSKLQAMCARYNAKSSPTWLIDSGATSHITNDISNIHSPTPYNGEEKVYIGDG
KGLSISHVGSSTLRTPATSFKLNNVLHVPHMKHNLLSAFQFLRDNYCSLTLDSNGSVVKDRSTGKTLLRGSVKDGFYPLQ
SSTSNRSFSGNVPPSLTASAFVSIKAPVKIWHSRLGHPSPPIFRKVLSRNKLAVQGASSVEFFCSDCAIAKNHKLPFKAA
SSSASHSLALLHCDVWGPAPVLSVSGFRYYLLIVDDHTKYSWFFPLKAKSEVYSTFVTFKTYVENTVGNKIKAIRSDSGG
EFVSSSFQAFLQLHGISHQLSCPHTPEQNGCVERKHRHLVETARTLLVASHVPQKYWVEAISTALYLINRLPISGLLCSP
WELLFHTSPDYTRLKIFGCSCYPWLKPYVSSKLDGKSKECVFLGYSLQHKGYRCLDLLTDRVYISRHVLFNEKSFPFSQV
HTSQFLQSTVPVPPIIDLHFPLSSSSHSPTPQPPPPVVPHVSSPSPSQSPDQSIAHPSSAAVTNHHPMVTRSKNGIFRPK
AYSATKHPLPSTLDYIPTTYNQASKHSEWRLAMQNEFNALQTTGTWSLVPSSPSQNVVGCKWVFRIKKRPDGSVERYKAR
LVAKGFHQQQGLDYQETFSPVAKPVTIRILLTFAVQYNWFLNQLDISNAFLHGDLQEEVFMQQPPGFTDSNLPNHVCKLK
KSLYGLKQAPRAWFDKLFQALKSFGFTQSCSDASLFVIKDPVLVIVLVYVDDILISGQQFIQKLGSLFPVKDLGPLHYFL
GLEVQRSSKGLFLHQSKYLLDLLQKTKMEGAKPCCTPLGTTKLDHSGIPLSNPTEYRSLVGALQYLTWTRPDISFAVNQV
CQFMHTPTDLHLQAAKRILRFLKGTSDHGLWFQKSSLHLSAFSDADWAGCLFDRRSTSGFCVYLGTNLISWSAKKQPTVA
RSSTEAEYRSLAHTAAEITWICKVFHDFGFPLSSKPTIWCDNISAISLASNPVFHARTKHVEIDYHYIRELVLANLLQVQ
YVCTEDQIADIHTKSLTKNRFLLLQSKLSLGTPTSSKLSLRGCK
>Copia-83_VV#LTR/Copia 52-4063 via tfasty with Copia-83_PT, 87.4% SW:4828, 1 frameshift. [Vitis vinifera]
MEEAGSGMIKLTASNYSIWKTRMEDILYCKELFEPIECRGYKPVTTTEDEWKKLNRKTIGQIRQWVDQSVFHHVAKEVDA
YSLWQKLESLYERKTAQNKAFMIRRLVNLKYKDGNSVAEHLSNFQGLLNELSTMKLELDDEVQALLLLSSLPDSWETLVV
SLSNSAPNGVITVNMVKDNMFNEEARRKELGISSNTEALVTERRGRSKSRKPSSDYNRDKSRGKSKSXKEIKCFYCGKPG
HIKRECRKFRREQFKGKCEEQKEDKDIAAVASDGDTIIVCDDACVNLACQDSTWVVDTTASFHITARRDFFSSYTSGSFG
WVRMGNEAKCEIVGMGDVELETSIGCKLVLKDVRHVPEMRFSLISVGKLDDEGYHSHLGEGKWKLTKGSLVLARGKKNNT
LYKTEARLVKGEVNIVENEASTELWHKRLGHISEKGLQVLARKKLLPVKGTSLLPCTHCLSGKQSRVAFRRFPSRRKPDI
LDLVHTDVCTMQSNTLGGALYYVTFIDDHSRKVWAYALKSKDQVLDVFKDFHVKVERQTGKQLKSVRADNGGEYRGPFEQ
YCRSHGIRLEKTVPKTPQQNGVAERMNRTICDRIRCMLSHAKLPKSFWGEAMRTTVDLINLSPSYPLEGDIPERVWTGKF
VSFEHLRVFGCRAFVHVPRDERSKLDSKTKQCIFLGYSNEEFGYRLWDPATKKIIRSRDVVFFEDQTIEDLDRVKKPKPF
SEEQVDLGPVSPNSMGHNEHREVVQEEQVDTVDRNDESAVDDVEENPTVENDGLEQQQEQATSELPTETQLRRSTRERQP
SRRYTSDEYLLLSDGGEPENYQEVLLHDEKKEWLRAMHEEMKSLHKNNTYELMELPKGKRALKNKWVLKKKPEPNRSQPR
YKARLVVKGFSQKKGIDFEEIFSPVVKMSSIRVVLGLAASMNLEIEQLDVKTAFLHGDLEEEIYMEQPEGFTIKGKEHLV
CRLKKSLYGLKQAPRQWYKKFDSFMVEHGYDRTASDHCVFVKKFSDGEFIILLLYVDDMLIVGRDTGKIDKLKKELSKSF
EMKDLGPASQILGIKISRDRTNGKLWLSQESYIEKVLDKFNMGKAKPVSSPLGSHLKLSSKQSPSSEKEKEEMRKVPYAS
AVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGKEHWAAVKWILRYLRGTSKTCLCFGTDKPVLVGCTDADMAGDVDSRKST
SGYLITFSGGAVSWQSRLQKCVALSTTEAEYIAITEASKELLWMKKFLQELGLQQERYLLYCDSQSAIHLSKNPTFHSRS
KHIDVRYHWIRDALEMKLFCLEKIHTDENGSDMMTKPIPTEKLQFCRKQAGLVEPLT
>Copia-85_GM#LTR/Copia 152-4228  [Glycine max]
MSTEKYDVLLVRLNGKNYSAWAFQFQIFVTGKDLWGHVDGSSPVPDKDTAKVEHAEWAVKDAQVMAWILGSVDPNIVLNL
RPYKTAATMWNYLKKVYSQNNEARRFQLEHDIATFRQDSLSISDFYSQFMNLWAEYTDIVYADLPSEGLSSVQTVHETTK
RDQFLMKLRSDFEGIRSDLMHRNPVPSLDACFNALLREEQRLLTQSIIEDHKSAIVPVAYVARGKPKSHDTRTVQCFCCK
QFGHYASNCPNKFCNYCKKDGHIIKECPIRPPKRNVTAFTASVDSSVPNNSANPTPVQQQAPDPAPTMTPEMVQQMIISA
FSALGFSGKSSSPWYFDSGASNHMTDNAQFLTNVKKYLGDLKIHTADGNPLPITAAGDISPSLTDVFVSPGLASNLISVG
QLVDNDCQVQFSQSGCLVQDQHSGKIIAKGPKVGRLFPIQFSLPSSLSLPLVSCNSAIVDYQVWHKRLGHPNANVLHDLL
KSNYLGNKHNSSLNAVHFDCIPCKLGKSKILPFPTHQSNVTQPFEIIHSDVWGVAPVISHAHYKYFVTFIDDYSRFTWVY
FLRSKDEVFSTFKFFHAFVQTQFSSKIKIFRSDNGGEYMSRSFQDFLQSNGIVSQRSCPSTPQQNGVAERKNRHLLDVVR
TLLLESHVPSRFWCEALSTAVHLINRLPSPSIGNESPFNRLYGHPPNYSNLRIFGCVCYVHLPPRERTKLAAQSVECAFL
GYSPHQKGFLCYDPTVRRIRVSRNVIFQENVYFFASHPDLTSPPISVLPLFSNSHAGEPSPKPLLTYSRRSTANQNQQTE
PQGPPRDNSLAADPVEEPEPAPPRRSSRIIKPPDRYIHSMTASLSSIPIPSSYSQAVKNACWQKAIETELLALEENQTWD
IVPCPTSVKPLSSKFVFSIKLRSDGSIDRYKARLVVLGNKQQYGLDYDETFAPVAKMTTVRTILALAASQSWPLHQMDVK
NAFLHGDLKEEVYIKLPNGMPTPSPNTVCKLKRSLYGLKQAPRVWFEKFRSTLLVFEFTQSQYDPSLFLQRTPKGIVVLL
VYVDDIVVTGSDQDVVSRIKNQLHSTFQMKDLGHLTYFLGLEVHYHHQGISLRQHKYIQDLVQLAGLPNAAPVDTPMEVN
VKYRRDEGELLDDPTHYRKLVGSLIYLTITRPDISFAVHTVSKFMQSPRHLHLSAVKRIIRYLLGTPKHGLFFPADSSIQ
LQAYSDADWAGCPDTRKSTTGWCMFLGNAPISWKCKKQDSVSKSSTEAEYRAMSAACSEIIWLRGLLTELGFSQAQPTPL
HADNTSAIQIAANPVYHERTKHIEVDCHSIRDAYDRRVVSLPHISTSIQIADIFTKTLTRQRHNFLLSKLMLVDFRASI
>Copia-89_SB#LTR/Copia 119-4412 via tfasty with OSCopia1, 1 frameshift and 3 stopcodons. [Sorghum bicolor]
MDLNPLFDADIEDDNSSSSSDAGLSFAAGSDAPTPPVAVLQTVNIKSHVPVVLELANPNYDEWRCFFDAFLGKFNLVPHV
SVAPTIDQHRDPDWVVIDQCIVSWIYISISKDVRNIVRAPKATAYSIWQKIHDQFRDNELHRAVYLEAEYRNLVQGDMDI
TQYTGRLKQLADALRDIGQPVKETSQVLTMLRGLSSRYRHAIPAITSCQPPHTFLSARSYLLLEEQYDKEHAKTSAQHAL
LTAGGSGGSRSSSSPAGEGGSSSNNNPPAPPPVSSNTGGPTSRNDNKGGRGRGRGRGRGRGRVFPHQQFGGQPFGYQPPH
GPPGANPxTGMVQAWQMPFRPPGAGVLGPRPGTTPHQAFFHGNDDPNTYPPPPAPTPDAWNNQALLAALMTANVPSTGPQ
TAEWYMDTGASSHLASNSGKFSSSHPVFSSSPILVGNGTTMPVTHHASSIIPTTSSPLKLNNILISPPLVKNLISVRKLT
QDNNVSVEFDPFGFSIKDRPTQTVLLxCNSRGELYPLHPPSATALVTTAPTPHLWHQRLGHPGRHALHQTLRHVDFVPSK
VPPVCDSCQLGKHVRLPFSHSTSASYFPFQIVHADVWTSPVLSFSGFKYYLAKSDVLPCLLAFHAYVQTQFQLPLLALQT
DNGKEFDNQALRHHCEQHGIILRLSCPYTSSQNGKAERILRTLNDCIRSLLIHASMPTEFWVEALSTATNLINLRPCQAS
GPKTPFELLFGVTPSYAHLRVFGCLCFPNQASTMEHKLSARTTPCVLLGYPSDHRGYRCPDLHTRxVITSRHVVFDETRL
PFQNSPTDENLTIDHPDAIPCDAPILLQKTATPHPPQVSPSPTNIIPLENSSPTTQTSTSPSTTQTTSQPVEHTPPASPP
ISSPAPVRHPMVTRLQARVVKPNPRYALTSTQTSISPIPKSVHVALQDPNWRAAMAAEHDALQRNRTWRLVDRPPGANIV
TGKWIFKHKLKPDGTLERYKARWVVRGFTQRAGVDFGETFSLVVKPATIRTVLTIAASRQWPTKQLDVSNAFLHGHLHEH
VLCQQPPGFLDADRPDAVCLLDKSLYGLRQAPRAWYTRFAQYAVKLGFRATRSDTSLFVLRNGGSTAYLLLYVDDIVLTG
SSEALLQHIVQLLQAEFAVRDMGTLNFFLSVDVKRTAAGFYLTQDRYAEDILERAGMTNCKPASTPVDAKGKLSTDGPAV
DDAHHYRSLAGALQYLTVTRPDIAFAVQQVCLHMHDPRAPHMALLKRILRYVRGTTSHGLLLRASSDLSVTAYSDADWGG
CPDTRRSTSGFCVYLGDSLISWSSKRQATVSRSSAEAEYRAVANAAAECIWLRQLLGELGCDVQKATVVFCDNVSAVYMS
SNPVHHKRTKHIELDIHFVRERVQLGELRVLHVPTGEQFADVMTKGLPTAQFEHFRSSLCVAPMTHSTTGG
>Copia-87_SB#LTR/Copia 127-4337 via tfasty with Copia-74_SB, 1 frameshift and 1 stopcodon. [Sorghum bicolor]
MGDEKKDELMERAWNQLSGNLVWPMLTRSNYQEWSAHVQCNLEAMYLWDAVESDKIERRRDRLALGAMIRGVPAELHSLL
LNKKTAKEAWAAIKSMRMGAERVKEVNAQKLLAEFESISFKQGETIEDFAVRIGKLATDLRGLGEKSVDDARVVKKFLRV
VPQRYNQVAVAIEMFFDLKNMSVDELVGHLRAAEERFEATVEDVTNKAGQLLMREEDWAAKHKARMMSDPSSSGGKTGGN
FKKNKTGGRGNSGGGRDSRDSGGRDGTSSGAPRRKGRCNKCKQYGHWARECKQKVTKEGTADAAHHVNTDADAQPAFLVA
RVCNLVRSTDVDSQKVFLNQEQVNPSDYETGSWVLDTGATNHMTGCRAALASLDETVRGAVRFGDGSKVEICGIGAVTIA
GRDQSHRVLSEVYYIPSLKCNIISLGQLEEGGCRVEIEHGVMKVFERPQPGIQDRGVLIRAECRNRLYTMKIKLKALVCL
LASMDDQAWLWHARYGHLNFRSLCELGAKEMVVGMLVIQHVEQVCDGCALGKQHRAPFPKVSAYRADKVLEMVHVDLCGH
ITPPTPGGKSFFLLIVDDHSRYMWLELMATKDEALMYFRRFKTAVELESGCKLRAFRSDRGGEFNSGAFASFCQDQGIKH
NTTASYTPQQNGVVERRNQTVVEMARCLLKSMGVPAKFWGEAVRAAVYLLNRSPTKILKGKTPYEVWHGKKPGVKHLRTF
GCIAYVKRVGPGISKLSDRSVPGVFLGYETGTKGYRVYDPVKDKLMVSRDVLFDEQKAWNWEGKDSRTIQGIQTETFSVP
MFDNTVPNPTIDEEAPSEADPGSPATTIPSLGGASPPHTPPVQQIEWATPPTHDSDFSSDAPLRYRTIPNLLDTTEQIQE
FEYSGFCFVAAEEPRTTEEAMSEECWRKAMELEMRAIEDNRTWVVSDLPPGHKAIGLKWVFKVKKDPDGNIVKHKARLVA
KGYAQRQGVDFDEVFAPVARIETVRVLLALAAQGGWEVHHMDVKSAFLNGDLNETVFVQQPPGFVIGKGDKVLRLKKALY
GLRQAPRAWNSKLDKELIALGFLKSKLDNAVYRRSSRDSFLLVGVYVDDLIISGPNTEDIRNFKQEMMKKFSMSDLGLLN
YYLGIEVKQGEGQIVLSQGAYALKILEGAGMSNCNACDTPMECRLKLSKKKEGDAVDPTAYRSIIGSLRYLVNTRPDLAY
VVGVVSRYMEAPGKEHWAAVKHILRYLKGTAGYGCRYEKRAEPKPILLGFSDSDFAGDVEDRKSTTGVAYFFGNSLVTWT
SQKQKIVALSSCEAEYVAAAAAACQGVWLSRLIADMMGTKEAPVKLLMDNMSAIALSKNPVHHExSKHIDTRYHFIRECI
EEGKVEIDHVGTAGQLADIFTKSLGRVRFVELRTALGVVQVQQI
>Copia-83_Mad_pol#LTR/Copia 274-3615 [Malus x domestica]
MAQYNHSVVMHLGGTNKWIIDTGATDHVTSDPRVFDELCDYVRDPYITSANGALSPVKGEGTISLTPTLSLVRALLVPDV
KCNLLSVGKLLDTLYCSAHFYPTYCYFQDIQTQKIIGYGKRIGGLYILTMEDTVVSGSNNHQVLSAKVDNRHQIWLWHRR
LGHPSFSYMKHLFPSLFRTCSDSEFKCETCVMAKSHRASFPVSDSKATLPFDLIHSDVWGPAKVTSNGFRWFVTFIDDCT
RVTWVFLMKNKSDVPLLLQEFCTMVSTQFQTKVKVFRSDNGGEYVNHTLACFFRDHGIIHQTTTPFTPQQNGVSERKNRQ
IMEVARSLMLDKCVPNHLWGHAVLAAVYLINRVPSRVLDFQTPFDVLQKHVSLVSVSKLPPKVFGCIAYVHVYSHQRSKL
DACALRCVFIGYANNQKGYKCYHPPTQKTYITMDVTFHEEVSYFVKPSSDSPLQGERGSEVQIRRDGMDDVLQAELGTEP
IMLRDTDQSATDSDRSPAADMSDELPSDDRLPAADMSNELPDDGSSSDDSSNSLVQDGGIHEVNSDDSSTYQLPPRANRG
KPKVQYEPDMHAKAKYPINNYVSTHRLSKPYASYICQLSSVSIPTKLQDALSDPKWVNAMKVEMEALEKNSTWDLVPLPN
GKKAVGCRWVFTIKHKADGSIDRYKARLVAKGYTQTYGVDYQETFAPVAKLNTVRVLLSLAANQDWPLLQFDVKNAFLHG
DLKEEVYMDLPPGIGTSPGKGVVCRLRKALYGLKQSPRAWFGRFTSSMKKFGYIQSHSDHTLFLKRQNGKLTALIIYVDD
MIVTGDDQKEIQRLQKYLATEFEMKELGELKYFLGIEVARSKHGIFLSQRKYVLDLLAETGMLDCKPVDTPIEQNHRLGL
FPDQVPTHKERYQRLVGRLIYLSHTRPDIAYAVSVVSQFMHSPSEAHMDAVTRILRYLKMAPGRGLVFSKNGHLNVEGYT
DADWAGSITDRRSTSGYFTFVGGNLVTWRSKKQKVVARSSAEAEFRGMSHGVCELLWLKKLLRDLGFKPKGAMKLHCDNK
AAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGIIMFPFVRSEDQLADALTKAVSNSVFSNSLDKLGMRDIFAPT
>Copia-70_Mad#LTR/Copia 365-4859 via tfasty with Copia-13_Mad, 4 frameshifts. [Malus x domestica]
MVTSAQLQILQSPITSLISTISSSVTVKLDDSNYLTWNFQIELLLEGHGLMGFVDGSHPCPARFDVPISEGSSVPSSDVS
SSTESDAFKVWKMHDRALMQLLTATLSPSAVSCAIGSSSAHDLWQRLKEQFSIVTRATIFQMKSELQNIKKGTDSISIYL
QRIKEARDYLFAAGVQFDDDDIVILTLNGLSSEYNTLRSIIRGRENVISMKDLRSQLLAEEAMVENVPITPFLSAMVARN
NGSVSKPEGHSTDTSYGGSSPSTFYSSGPSGFRPNHSKNKYKGKFQYNSQSRFGNSKSTYGNYNVNSAPGILGSSPPKQQ
GFSSNSCQICGKFGHFAPTCRFRNSDSAISEGCQICGKKNHSAKYCHFRNSNPSTQAPTALHVSSSQHHQPSAHPQQFWL
TDSGASSHMTADLSNMSLASPYPADETIQTASGAGLSISHIGSSTLHTPLKPLQLNSVLCVPGLSQNLLSVHKLCLDNHC
WLIYDAFCFWIQDKATGRILFQGKCSNGLYPIPLPARVRAISSQPQAAYLGRQVSSSLWHSRLGHPSNSVVSVMLKKCNL
SVSPDSLPVMCHTCLEGKFCKLPFVKSVSKSLHPFEVIHSDVWGPSPCTSIDGFRYYVTFIDECTRHCWLFPILNKSDVF
STFVGFSNFVSNHFSTSIKTLQSDGGGEYLSKSFQKFLLDKGIKHQLSCPYTPEQNGLAERKHRHIIETAITLLQTASLP
PIFWSFAVQTAVYLINRMPSPTLHNKSPFELLFNDVPDVHHLRIFGCSVFPLLKPYNSTKLQPKTTKCIFLGYASSYKGF
ICYDIVHTRFYISRHVVFDESEFPYPTLSATRPVSITPPLHPVPSSPSPFILVTGTNHIVSLPHSRTPIMPETMSHPCSD
QHSGTSTPLQSITASTGHQSSSSFPVAPAIPNGSCSEIFHESPTLPSSAPGVAIQHEFQPDRLQVLLPIPPMNTHSMQTR
AKNGISKKKAFLSVVQDAESVDLSQMEPATYKSALKSPLWFSAMEEELAALKTQHTWSLVPLPHNKNLVGCKWVFKLKRH
ADGTISRYKARLVAKGFNQEEGIDYGETFSPVVKPTTVRLVIALAANFGWSLRQLDVKNAFLHGILNEEVYMSQPPGFSD
PHNPTHVCRLHKSLYGLKQAPRAWNERFTSFLPSLGFLSTYSDPSLFVKHDGNSVVILLLYVDDIIITGSDSVPIAAVIK
ALTEEFDIKDLGPLHYFLGIQITQNASGMFLSQSKYVSDLLVKADMVHSKPCSTPCLPYNRLLKDDGHPFNNPSLYRSIV
GALQYLTFTRPDISFSVHQVCQFMHCPMDSHYAAVKRILRYLKGTMDLGIQFRKGDLDLHAFSDADWAGDPNDRRSTTGL
VVFLGPNPISWSSKKQNTVSRSSTEAEYRALSSTSAEIDWIKQILHFMQIDVPCPTTLYCDNLSAIALAYNPVMHQRTKH
IEVDVHFVRERVAKKLLQVHFVSSNEQFADILTKGLSAPLFQTHCYNLRLGKPHSEIEG
>Copia-68_ST#LTR/Copia 118-4631 via tfasty with Copia-73_ST, 77.8% SW:3758, 3 frameshifts and 4 stopcodons. [Solanum tuberosum]
MAPDSNSEIPTSSVQGGSMVIDAHHPLYLQACEIPTSSVQGGSMVIDAHHPLYLQACDTPGSSLVSIQLTGSENYSLWSR
SMKIGLLGKGKLGFVDGKYPKNLFPAPLHDLWEKCNAIVLSWIMISVSRELLSGIVYASSAHQVWNDLKERFDKVDGSRI
FFLHKEIATLTQGVSSVAHYFSKLKELWMEFDSLMPCPSCACEVSKTYAVHFEYQRLMQFFLGLNETYNQCRSQLMMMDP
RPSVNKAYSLVMAEECQRALGKSNIVSAETTHPGQLSDAMAFFSSGKGHTQSGSGSSSHSGSGSKSQRASNSNMYCDYCN
WKNxPWPCYCCxFCHRIFSSxYKWSCRWFTWISVxGSRFLLAAQHADLSLIQDLSHQVVVSLILLIHLCLMCSHITIHPH
SGSLPFLTYSSINLLTRRMAGLRVFHMQVTGMPKWIIDSGASKHMVNDFKLITNFTSLPSCQVGNVSLPTGSLAKVTNIG
SSQILIGSDIHNVLHIPEFKYNLLSVPKLTRELNCGVLFYPDFCLFQDLPSGKVRGIGKLEDDMYILPVDHQLKSQGTSL
SSFIANVVSVSKSTSLINAYSRNLSLWHRRLGHVSFHTPRKLSCFNNVSPTSDVPCTVCPLAKQSRLSFPLSNTTTSTCF
HTLHVDVWGPYRVPTHDGERYFVTIVDDCSRYTWLLLINSKSEVIVAFRNFFTMIKNVFSAIVKILRTDNGCEFFNSQMT
ELLQSLGVFHQISCVYTPQQNGVVERKHRHILDTARALRFQASLPLKFWGECVLTSVYFINRLPSTILKGKTPFGVLFQT
SPSLDHLRVFGCLAFDTEVKKVDKFSSRTIPSVFLGYTTLQKGYKLFSLLTKEFLVSRDVVFKEEIFPFQCMDLNVSSIF
PVLHPSAVCESSPPLVVPAESPPSSSAFDLDHIPAVESTSCDNTTQSPTLRRSSRISRPPIWLQDFLTSQPKSGCLYHVS
NHVSYDKLSKSYGQALAAYSSIVEPVFFSEAAANPLWVEAMKSEISALEDNQTWSIVDLPPGKQPIGCKWVFKVKYLASG
AVERYKARLVDKGFSQKDGLDYSETFSHVATMVTVRSVVAIAAAKHWPIFQMDVHNAFLHGDLPEEVYMVIPPSFGRQEG
SSKFCKLHKSLYGLKQAPRQWNLKLTAVLAQLGFVQSHYDYSLFTRHVDKELIVVLVYVDDLLVTGSCKNLIAQTRNDLK
LKFKMKDLGELKVFLGIEFSRSKEGYVMSQRKYALELISEMGLSGAKPLYTPLDPNVKLTSIEFYSYVQGAETTVKDKPL
EDIGRYQRLVGRLLYLTMTRVDISFVVQTLSQFMHAPKQSHMEAALRAIRYIKSAPGLGLFMPAQSTGTLTTYCDSDWGT
CVQTRKSVTGYLVKFGEALKKQDTVATSSAEAEFRSMASAVAEITWLIGIYKELGKFNIKQPVRFICDSKAAIQIAANPI
FHERTKHFYIDCYFVREKLHQGMIKTHHVSTKDQLLDLLTKGLWKASHVHLMSRLGLKDIFQPLA
>Copia-71_ST#LTR/Copia 75-4321 via tfasty with Copia-81_ST, 72.9% SW:3433, 1 frameshift and 6 stopcodons. [Solanum tuberosum]
MAPDQNNQIRPVAETCEPSIDFHHPLFLQTSDTPGLTLIGIKLTGPENYTLWSKSLRLVLLGKNKLGFMDGTCMKNQYSG
SLASLWERRNAIVLSWIGATVSPDLVSSIVYALDSNKVWDEFKERFEKSNLTRIYQLWKDIASLTQGTNSVTVYFSRMKN
YWDKIDALVPTAGCSCEASRPSIELLRNQCLLQFLMGLNESFSHVRSDILLKTPTTPPTSHQYQMNQYPNYNQNQNYKSR
SPLAPPGSVCDHCGYKGHLKTNCYRLVGYPPDFQRKKNLGSAGVPTKPYASSNVAEVKGTNDVKGKGRYISEDHYQELIG
RGNKASTSGDFQAHMASILALLSNVFSHTWIIDSGASHHITFDRECLDEVFKTTSSVENGGVQVPNGGKCEVIHTGSTKI
LRSHKLKNVLFVPDFKFNLLSVSKLTRDLSCSVSFYPEFCVFxDLYTGRVLGIGKEDNGLYFLKDEPIAACLAGSTDREA
EDDSIWHKRLGHPSKSVLDLIPVVMTNTNAHKPCEICLLAKQTRFKFPVSDSHSTAIFQLIHINVWGLYKVPTYDRKHYF
VTIVDDHSRYTWLCLVQHKSEVIVVLKDFLLKVHNQFGVTIKVLRSDNGKEFLNSQCSELFSSLGIVHQSSCAYTLQQNG
VVERKHRHILVVARSLKFQSSVPNRFWGDCVRTIVYLINKLPTLVLQSKTPYEILYHKPPACDHLRVFGCLCFASTLPKG
TKFEAKTRRTVLIGYSETQKGYKLFDLESGTCLVSRDVLFRxDNFPFKSSRGEDEDVFGVVTLEDKDIFGVHLPKMVTPP
SLEIPVYLPQTSLPNMPSAGDDIQVPSMNVDPYPKPPAEIEKLRTTGRSVNPSVWLQDYVTGKKYASSSLYSIDKVLSYD
RFSATYKASIHAFSTHVEPKSFKEASCDPNWVNAMRLEIQALEDNHTWDLVPLPVGVHASGSKWVFKIKYKANGDIERYK
ARLVAKGYSQLERLDYHDTFSPVAKMATLRTVIGIAAAKNWDLFHMDVNNAFHxGYLYEDVHMHLPQGFNRQGKPLVCKL
KKSLYGLKQASRQWNIKLTDALVNGGSCQSSYDHSLFTQVSGSDIVVILVYVDDLLITGSSLTLIQLAKDTLHKAFKVKD
LGQLRYFLGIEILRSQKGILLNQRKYVLELISDVGLSGSKPAITLLEMNRKLTTVEYDTTVGVSDDPELEDILSFQKLIG
KLLYVTITRPDICFAVQVLSQFMQRPKYSHMDSAxRIVRYLKGAPGLGILLPPGNITSMTAYCDADWGSCPNTRRSVTRY
VIILGCSLVSWKSKKxHTVSRSSAEDKYRSMDVVTAEIIWLTGLLRDLGVVLSSPVGLFCDNKVALQIANNPIFHERTKH
IEIDCYFILEKGSNLVxFSVSTNMQLADLLTKGLTSAQHHSLLSKLGVFDVYHPPA
>Copia-80_BRa#LTR/Copia 82-4097 via tfasty with Copia-8_Pru, 84.4% SW:4040, 1 frameshift and 1 stopcodon. [Brassica rapa]
MTEAGSFSTPAVPKFDGDYDHWSLIMENLLRSKEYWSVIDPGFEDLRRMEVPTPAQQQSLNEAKLKDLKAKNYLFQSIDK
TTLKTIIQKETAKQLxDSMKVKHQGNARVKRAQLQRLRKTFETLEMKIGEKVSDYFARVMEVTTDMRNCGEILEDVKIVE
KILRSLTENFNFVVCSIEESKDIDRLSVDELQASLQIHESKVTEQRSEEQVLQVENEPRNARGRGRGDPQRRGSSYRGRG
RGRSFVNRSAINCFRCGKLGHYQFECTSLEKKANYVEFDEEEELLLMAHADLSNAERKGVWFLDSGCSNHMTGEKSWFCE
LDEEFKHSVRLGNSARMLVQGKGNVRFEVEGITQVVTDVYYVPNLTNNLLSIGQLQEKNLTVLIKNNVCKIFHQQKGLIV
ETHMTMNRMFLVYAKKKPAPGNCFKAEEEDLGVLWHKRFGHLNTKAIHVMHKKEMVKGLPNLKGEVKVCTICNVGKQQRV
KFPKQSKWRAEEKLQLIHADLCEPITPTSNSGKRYVFVLVDDFSRKTWVQFLVEKSEAFEIFKLFKNAVEKEANTVIRGL
RTDRGGEFTSDKFNKFCRDHGIKRQLTAAYTPQQNGVAERRNQTIMNMVRCLLSEKEMPKTFWPDAVRWTVHVLNRSYSR
SIKDKVPEERWTGFKPKVDYFRVFGSIAHVHIPEQKRIKLDARSHKCILLGVSEESKAYRLYDPNTKKITISRDVIFEEE
AKWIWDSSNVERDVLEWGDDGMIDEEESDEEENGNEEVGGGAETQVTNAEVTNNIGAGETADVISEVGETSRRQRRQPVW
MQDFVSGEDVGEEDGEVNFALYICNDDPTSFNEAVKEEKWKDAMDKEINSIERNHTWEVVDLPSHAKKIGVKWVFKTKLN
EEGKVEKCKARLVAKGYSQTMGIDYTEVFAPVARWDTIRSLLAVAAQQGWCVYQLDVKSAFLYGELKEEVYVDQPEGFLK
VGEEDKVYRLRKALYGLKQTPRAWFSTIDAYFKREGFQKSCYDHTLFLKRQGDKILVVSLYVDDLIFTGNDEALCSEFKP
SMEKEFEMTDMGKMKFFLGVEVNQKSDGIHICQKKYAKEVLERFNMWNCNPVKNPIVPGTVISREGNQGADPTLYKQLVG
CLMYLTVTRPDLIFVVCLLSRFMADPKEEHMLIGKRVLRYLKGTLDLGVFYGRSSKLELLGYTDSDYARDMDDRKSTSGY
AFLLNGAAICWSSRKQDIVTLSSTEAEYVAATSSACHSVWLKGIMKELGAVGEETIDIMCDNSSAIKLSKNPVMHRRTKH
IDVRYHYLRNLSNEEKIRLVFCGTNDQVADIMTKPIKLDQFEKLRSMLGMQSAASGSLN
>Copia-74_MLP#LTR/Copia 83-4493 via tfasty with Copia-83_PT, 58.7% SW:1258, 1 frameshift and 2 stopcodons. [Melampsora larici-populina]
MASTSAPDSSVKGKEVTTSSSTKPKEPSTPPTNFDDLFSVGSKWGPLALPTSSVVGLTILEPPGDNSNYANWELAMSGSI
IGAGMAHILNPKLRDADQPNFHWTQQNHAICSVLLRxAHSKNYSVMRPHMGNAAAMWQSLSDSHNDASMGSKMLVLRCLI
SCQMVDDDIDTHLSNVEKLATRLNQLISKSKLSMDDIVCAAISASLPNDWNAAISSLMNQNSLTAGSLMSSLRQEGIRRR
DQASSSHILSVTNDRNQSVVQPQVNHSSNRGRGKQRTPNFxSNTSATNDLICSHCNLKGHAWQTCNKLAKQFFSQMIQSQ
PSFSSTSRAPEVNLVNQPSIQQPSPSTELIPLSAWNPAPNTQFHQPEGSGFLVTTDACALSTGVGKRLWILDSGCTQTCV
PSFTSEEILTSVALNSSKIPSIRVANGISLKVSQQRAVPLPWSKGTITMDVIEVPGLQHSLLSISQLRSLGFSTSFLQDR
VEILSQGGSVVATGFYQGGLPILQYEVSSLCLHSSVYPDPNQSFYDWHCILGHLGEIGTKRALSSMKISVPLTQKDVDDV
KNCIHCCRGKLHKTTFRSRSPHRSRTPFGVVHSDVAFLPLKSKAGYPYFVSFIDDFSKFTVCYAMKSKDQVYMYFKKFVN
FIKIKFNFNVLSLRSDNGSEYVNKNMTDYCLHQGITAFCGAPYTPQSNGVAERWNRTASERLRTLFSSSNVPLFFWPECL
RQIVLSFNNFPTKTNAGLRSPLSALDHGPDDIKLFAPFGCAVEYLLPPPLRSQLAPVSQEAVFLHSVPDGKYVVAYDRAR
HLIVKTASFKFFPSKFPFILEPKKKTSDALSLPWPDLLSIEEPVQPYHVLTRSKTSSEIPIDSPISVPVNQHQTIEPIEV
PSSKIKIDISEPSSLVPIEPTVPLPIDSAPSDDSSTSSSTPVTIPVLRRGTRVRKEPERFTPSAFVLDTSSPEPKSYRKA
IDSEEASQWKAAAETEIDTLRKLGTWKLVPRPSNRKVLRSMWVFKRKLLPSGEIDKYKGRLVVLGSGQIPGIDFNDVFSP
ASRQESNWVVLTVAGVRKWKVKGFDITAAFLHGNRLEEDVFMEQPEGFRDKKFPEYVCHLILPLYGLHQSARNWNNKFTT
SLIGMGLQQSSHDPTLFFKLVNNVLVGLITVHIDDISVTGEDDFLSSISTALHSKFPISAETDLEHHLSISIDRSEDLSY
FTLQQTAYIVKITKQFFSEEPIHVSTPYVSNFSSLVPAIDNSKANSKYRSIIGALLWLAQCTRPDIAFAVNQLSQFLKNN
NSDHWNAALRVLAYTYHTRHLGLTLGGSDNKLQGFTDSDWAENLHDRSSTSGYLFRLGNGFISWKSRKQKTTALSSTEAE
YMALSDAGREAMWLRQLLQEIRFIDNSPTIIHYDNTGSAALANNPIHHSRSKHIDLRYHFIRQLIKDKNVILKQVNTSFQ
LADFLTKALSRPMFINLRNQLGFKDCSTHL
>Copia-44_BRa#LTR/Copia 52-4217 via tfasty with Copia-83_BRa, 84.2% SW:4614, 1 frameshift and 2 stopcodons. [Brassica rapa]
MSNVTKLTSTNYMMWSLQVHSLLDGYDLAGHLDGTSQLPSPTITTEGTVTTNPAHTLWRRQDKLIFSGLIGAITAPIQPV
VSTAKTAADIWSTLAATYAKPSRGHIQQLRLQIRQWSKGSKTIDEYVQGLTTRFDQLALLGKPMEQEDQIENLLGGLLED
YKQTVDQIEARDTSPSITEVHEKLLNREAKILAAAAPVSDVPITANAAYTQHQSRHQQPQRQNQPWNRNHQQQQNRYNNN
SKDNRYNKSSQGGYQGKCQLCGVQGHSARRCPQLNNQSSTDKASSSVSSYPPWQPRANVAMLPASPASSWIMDSGATHHL
TSDLDNLALHQPYHGNDRVLIGDGSGLPITHSGSLSLPSTTRPLTLTDVLCVPHIHKNLISVYRLCNANKVSVEFFPASF
QVKDLSSGVPLLCGKTKGDLYEWPVSPSTIQSFFTKTATPSSLKDWHYRLSHPSSSIINVVIPKLSSQNFFCSDCAINKI
HKLPFSQTTIVSTRPLEYVVSDVWTSPTLSIDNFKYYIIFVDHYTRYTWIYPLKYKSQTRETFITYKSLVENKFQQRIGT
LYSDKGGEYIGLRSFLSSSDITHLTSPPHTPEHNGVSERKHRHIVETGLTLLTHAGMPSTYWTYAFAAAVYLINRLPTPV
LNMESPFKKLFGSAPNYMKLKIFGCLCFPWLRPYTSNKLENxSTPCVFIGYSLSQSAYLCLQKSTGRIYTSRHVRFDEHT
LPFHSPPSSSPSSTNNQEPETQTYPHPQATRIPLPTPLEVTPVSSPGHQLIDSSPTEAAVTNATDDSGNAQVCTETQTRA
QPSPTQIPDPNTHQTEPLPQPNIPSSSSLQPETSPANHQPVENPPPNHHPMTTRRKNNITKPKTKFSLSVSHHPSIPPEP
RTVNQALKDKVWRDSMSVELDAFARNQTLELVPRQAHQNVVGCRWIYKNKFHPDGTLRTPKSRLVAKGYTQQLGRDYNDT
FSPVIKTTTIRLILDIAVTRAWPILQLYVNNAFLQGTLDEEVYMEQPPGFIDSDHPTHVCRLRKAIYGLKQAPRAWYTEL
KSFLQSIGYLNSLADTSLFVLRQGTDYTYLLVYVDDILITGSSKATITSVLKLLADRFSVKDPEDLNYFLGVEALRTNNG
LHLSxRKYISDLLHRFDMSAAKPVSTPMATDHKITIKSGVPLSNKSDYRRLVGSLQYLLFTRLDIAFAVNRLSQFMHSPT
DQHWEAAKRILRYLAGTQTHGIYFSARNNLQLHAFSDADWAGDTHDFVSTGAYVVYLGKNPVSWSSRKQNGVARSSTEAE
YRTVANTSAEIRWICNLLTELGIQLPQTPVIYCDNLGATFLCANPFFHSRMKHVALDYHFIRGQIQSGMLRVSHINTKDQ
LADALTKPLMRSRYTDLRSKLGVAPAPPP
>Copia-44_BG#LTR/Copia 105-4262 86.2% sim to Copia-26_BG, SW:4624, [Blumeria graminis]
MSNDEKKPFGSTFTIKGVTPAKLDNYPVLTGSENYQDWAGTWEIGFDMMGLKEVLTGEVSKPEKTSPDWEEWNTANKLLR
GYLVSAVDRSLRNMITSEQTARDAWANIKARFDRETPSTTLSLLRNIVDLKLQENENVADHLNNFTNAWDRLYQRSLTSK
SSVAQAFRDVTSSDEVKGAFLLLSLPKSMDNIIDNLATKDLIKYQDIQPKLLDLSADRNVGEADSKAYHASTQEATECSW
CKIKKFNYKGHTYKNCFKLKKHKEQQKEAKVTKKSALQNENAKRVSELDDELSDRAFMANSSSSTPKEWILDTGATTHMT
GCIDDFESVTPLENKTVRVADNSYTPVTGKGTVRLRALTSDGRSRNILLNNVLLVPSFRQTRLFSWEKLREMGYELFSKG
DNTFIRDKNGQEVLWATAREKSIVIKLEEIKARFSSYREFHEALGHPGVTTIRDPSKLYTDGHNLPSLPQTFHCPACEKA
KSKHIVPDPIHEDPSNVFEIIHSDLSGKFSVPSLNGKYYYITFIDGKTRFSWVRFLRNKDEAAEAIVDFVKLIHRQFNIK
IKRWRTDNGGEFVNKTINSFFKSEGIVHELSPPYEHERNGLAERFNQTLTTIARTMIADLSLNFWAEAISTASYLKNRLP
HSRLPQNTTPYEALQGNKPKIKHLQPFGRKCFVHIHKDSRPSGSKLLPRAIEGKFMGYTESTKIFRIWIPSKHKVVESPN
VKFAPLNSGEATHSLETTSESNFEIKNIESTSFHPTLPSKFPSKPVESSPSVDNTSSSHPIEPQNKHDSEQTLQQPAQLE
TSENHTQETLSIRSRPKRSTKPIERYGLSAHHGSITRTWNDNNSEQSRLVSAEESQIEVENNAVALAAKRAPKTNEEPKS
IEHAFQQPDGNRWREAIDKELTSLSQNHTWDVTDRPLKRNVVGSKWVFKIKRNADGSIERYKARLVAQGFSQVPGHDFNE
TFAPVARYDSLRILLRISAQNKWIPQQMDVNSAYLYGMLEEEIFMELPPGYRITGKCAKLRKCIYGLKQSGREWYECISN
SLKAKGFESTTFDPCVFVHPKEMVFISIYVDDILIFGPPNDFRQNLKTSIGNDFDCKDLGDAKYILGLEIITNSSGIRLS
QQGYSKRVLERFGFTNAHKIGTPLDPNVTLFKGTEEERLENVKEYQAIVGSLMYLVIGSRPDLAYTVTLLSQFSSCPNQT
HLQAAKRTLRYLAATTTWDLFYPNGACEDLEVYADASYADNPHTRRSTSGYVIRLGDAAISWSSKQQRSVALSTTEAEYM
AMSLAARQITWTKYGLTQLRQKFETVLHSDNNGAQELARNPRIHERSKHIDVHYHYVRDKLKEGEFELLYVKSANNLADL
LTKALAKPAHHRLSNHIRCAKRGEVS
>Copia-44_Mad#LTR/Copia 360-5041 via tfasty with Copia-26_Mad, 3 frameshifts and 6 stopcodons. [Malus x domestica]
MVTSVQLALTQSPISSLIPSVGNTVTVKLNDSNYVTWKFQLELLLDGNGILGFIDGSIPCPYPESETGTVVNDIVMSDAF
KIxKIHDKALMTFITATLSTTALSCVIGCTSSKQMWTNLCERFANMTRTNIVQLKIDLQNITKGPELIDDYLQRIKDARD
KLAIVGVVISNEDIIIVALRELPPEYNTIKSVIRGRENLVSLPELRSQLKAEEITLDDVPKQVPLLSAMVAHTSSSVYDA
GGTSGTKSISLGSLFCGPSNSSVSYSPVFNSYQQMPSLQPMPQLQQMSFPQMPLSLPQMVMPQVPIPSPYAFVSQTGSSS
YNNFRGNNFKSKGKWKKLFYGSNHSQQPHLYKSNGFPVSHPSSPFDHQMQSPQGFQPFLKCQICDKNGYSSINCFQQGCQ
ICHxVRHTAATCFDRNQQNIQGYSLHPQQFQQATQGYSSSAHCYPHTQNSGMSSVQFxNLSMMQHPLYASHGVPPPSHSP
IAMNARTTISHTAPPHEFxLLDSGATNHMTSDLSNLNVAAPYPSNETVIGASGEGLRIAHIGNSTLPTPNYNFQLNYVLH
VPRLSQHLLSMHQLCKDNNCRCIVDEVSISIHDKATAKTLFHGPSSNAMYPLPIIKSTKASPATFLRHKVSSTIWHNRLG
HLTNSIVRTALRKASISDSMSLVSDTCIPCLKGKFTKLPFPITTSKSIIPFEVIHSNVWGHAPSVSIEGYKYYVSFIDEC
TRYTWIFPLINKTAVFGIFVQFQAYVSNCFAANVKILQSDGGGEYVSAHFQRFLSTKGILHQLSCPYTPExNGLVEQKNR
HVVETAITLLQTASLSSSFWYHACATATYLINRMPTSLLGIKSPFEVLYQSPPRLDHLKVFGCLCYPSVKPYRSDKLEQK
TMECIFLGYNAKYKGYICYSVHNKKFIISRHVLFDETQFSSWSNISSQVFKSPGSQFSRVSSTPVVHNNTFQHPPVILIP
LPHVFVPSPNATVQPNNVSPSSIVPSSSTSDSPRFSKLHPDTTVSQVSKLQCVSLPSHNSHPMQTRSKSGIVKKKQAYNT
AIHSNCDIEPTSFTAASKSPQWKKAMVEEMDALLQKHTWSLVPLPPNKNLVGCKWIYKIKKHLNGAIAQYKAKLVAKGFP
QEAGLDYYETFSPVVKPTIVHLILSLAATKGWKLKQLDVKNAFLHGFLDEDVYMSQPQGFIDKDHPEYVCKLERSLYGLK
QAPRAWNDRFTTFLLLLGFQSSFADPSLFVKHDGKSIIVLLLYVDDIILTGDNDGCIQTVVSQLTREFDIKDLGILHYFL
GLQIDYQSRGMFVHQTKYVHNLLIKTYMFHCNPCITPCHPNQKLLNHGNSSFSNPTLYRSIVGALxYLAFTRPDIAYSVN
QVCQFMHSPLESHFIAVKRILRYLRGTLGWGICFRPGSLDLKAYTDADWAGNPNDRRSTIGFVVFLGSNPISWSSKKQHT
VSRSSTKAKYRAMATTTAEIVWLQQLLKDLHIDSSFPHLLHCDNISAMALATNPVLQFKAKHIEVDCHFVRERVQQGVIS
LQFVASANQYVDILTKGLCSPLFTHHCSNLMLGDSQHKIEG
>Copia-46_GM#LTR/Copia 14-4324 via tfasty with Copia-32_VV, 77.9% SW:3853, 2 frameshifts and 3 stopcodons. [Glycine max]
MAENKKPHIDGTKKTPSPYDLNSNDNTGNLITQVQLRGENYEEWVRAMKIALCARRKWGFIDGTYEQPDDGSPEMEDWWT
VQFMLVSWILNAIEPTLRSTVTWENAKDLWEDIRNRFSVVNGPRIQQLKAELADCKQQGMTMVSYYGKLKTLWDELANYE
QIPRCSCGGCKCDIATKLEKRREEERVHQFLMGLDDASYGTVRSNILAADPLPSLNRVYAILVQEERVRTISITKEERGA
VMGLAVQAGHKSKWRGEIKDKSMVCSICRKAGHDDKNCFQVVGYPDGWGDRPRSEGKSSGKNQQRNGTSAGRGRGGMARA
NATHVEKSELPGLSNEQWQTLVEMLNNRKTDEIEKMTGKHPDNLWIIDTGASNHMTGYLKNLCQQRTIRGCPVGLPDGEK
VIATKEGTVILDGGLKLENVLYVPKLQCNLISVSQMIDETDCVVQFTKKICAMQDRTLKTLIGAGERKDGLYLYHGVRNS
KAYHTSTKYDLDILHKRMGHPSFKVVKLIPNVTCSGKHLNKVCEICERAKQTREKFPLSTYRASGIFDLIHCDLWGPYRT
PSSCGASYFLTLVDDYSRSVWIYLLSEKREVSQTMINFFALIERQFDKHVKVIRSDNGTEFTCLKQYFLEHGILHQKSCT
GTPQQNGRVERKHRHILNVARALRFQGRLPIRFWGECILTAGYLINLTPSPILDGKTPYELVHGTSPSYDHLRVFGSLCY
AHNQDRKGDKFDSSSRKCIFVGYPYGQRGWKLYDLEREVFFVSRDVKFVETEFPFEESINNLSPTSLVPLINPCMDEECM
VENGHDNDTNAYIRGGASEASNEPQSFAPPLEKQNCIDVVQCSSEGPETRSNIPPTSPLGKGHRIKRPSVKLSDYVTNTM
IKLSPSTCSSASSHDSGVRYPIAHYVNCDRFSNQHRQFLAAVSAGREPMHFSEAVQDERWREAMASEIEALQNNGTWTIT
TLPPKKKALGCKWIYKIKYHSDGTIERFKARLVILGNHQVEGLDYTETFAPVEKMVTVRTVLAVAAAKAWELHQMDVHNA
FLHGDLQEDVYMKLPPGFMTEHKGMVCKLRKSLYGLRQAPRCWFAKLSTALKNYGFCQSCSDYSLFTLRTTTVHLVALVY
VDDLIVSGNDSEAILRFKLYLHRCLHIKDLGRLKYFLGVEVARSPKxIYLCQRKCATDIILETGLLGAKPMSLPLEENHR
LALAEGSLFSDPGRYHRLVGRLIYLCFTRPELSYCVHTLSQFMQQPRKEHWHVALRVVRYLKGNPGQGILLRSDNDLKLY
GWCDSDWAGCPLTRRSFTxWYISLGHSPISWKTKKQHTVSRSSVKVEYRSMANTICELKWLKAILSSLVVLHPQPIQLYC
DNQAALHIAKNPVFHExTKHIEVDCHFVRDEVLKNTIQPSYVPSRIQLADIFTKALGTKQFLFLLSKLGIQNLHAPP
>Copia-45_GM#LTR/Copia 95-3994 via tfasty with Copia-31_VV, 86.6% SW:4412, 4 stopcodons. [Glycine max]
MALEEGKVKIEKFDGRDFSFWKMQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVIRLTLAKNVAFNIVNEKTT
AGLMKALSDMYEKPSTANKVYLMRRLFNLKMGEGISVTDHINEFNTILAQLESVQIKFEDEVKALILLSSLPDSWAATVT
AVSSSTRENTLKLSDIRDLILSEDVRKRDSGESSSHVSNSALNTEGRGRTTQKGQNGRGRSKSRGKGQRKFQSDVTCWNC
DKRGHFSNQCKAPKKNKSHKNKKRDDDESANAATDELDDALICSLDSPVDSWIMDSGVSFHTTPSKDLLSNYVSGRFGKV
YLADGKSLDIVGRGDINIKTSSGSLWTLHNVRHIPALKRNLISIGQLDDEGHHTTFGDGAWKVTKGNLIVARGKKRGSLY
MIADEDMVAVTEAVNNSTMWHQRLGHMSEKGMKLMAAKGKLSSLKHVDVGACEHCILGKQKKVSFSRAGKTLKAEKLELV
HTDVWGPAPVKSVGNSRYYVTFIDDSTRKVWVYFLKNKSDVFSVFKRxKTEVENQTGLKVKSLKSDNGGEYDSQEFKDFC
SEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKAFWAEAINTATYLINRGPSVPLNYQLPEEVWSGKEVK
LSHLRIFGCVSYILTDSNSRDKLDPKARKCYFIGYGSDMYGYRFWDDQTKKVIRSRNVTFNENLFYKDKFSAESTCAGKL
SEISEKATLEEISESDVANRNxSTGVEVESEPEPSTPPRKSSRISVPPDRYSPSLHYLLLTDAGEPECFNEATQGNDTIE
WELAMKDEMTSLQKNKTWSLTKLPEGKKALQNRWVYRLKEESDGRRRYKARLVVKGFQQKQGIDFTEIFSPVVKMTTIRV
ILSIVAAENLHLExLDVKTAFLHGDLEEDIYMTQPEGFEVPGKENLVCKLHKSLYGLKQAPRQWYKKFNEFMSNSGFKRC
DMDHCCYVKKYTNSYVILVVYVDDMLIAGSSMAKINRLKQQLAENFEMKDLGPAKQILGMRILRNRSEGILKLSQEKYIH
KLLDRFYLGDSKTRNTPLGSHLKFSKKQSLxTDEEKCYMSRVPYASAIGSLMYAMVCSRPDIAHAVGVVSRFLSNPAKEH
WEGVKWILRYLKGTSEMCLCFRKGNLTLQGFSDADLGGDFDTKKSTTGYIFTLGGTAVSWKSKLQDRVALSTTEAEYIAI
SEAAKEMIWLKNFLNELGKEQDDAPMFSDSQSAISLAKNPVFHSRCKHIQLRYHFIRELINDGDLSLLKILGSENPTDML
TKAVTTDKLRLCIASVGLQG
>Copia-43_Pru#LTR/Copia 73-4044 via tfasty with Copia-67_Mad, 87.2% SW:4710, 2 stopcodons. [Prunus persica]
MSTEGSSFVQPSIPRFDGHYDHWSMLMENFLKSKEYWSLVENGITTYAEGTVLTEAQLKSVEDQKLKDLKAKNYLFQAID
RAILETILKKDTAKDIWDSLKKKYQGTARVKRAQLQALRKEFEMLQMKNGETVIEYFARTLTVANKMRMHGDRMEDVTVI
EKILRSMTPKYNYVVCSIEESKEIDAFSIDELQSSLLVHEQRMTCHEMEEQALKVSQEIYSLGRGRGRGSFRGRGRGRGR
QGSFDKSTVECYHCHELGHFQYECPQKEKEYKANVAETEEEMLLMAYVEDEGDQMSSTWYLDSGCSNHMSGSKKLFSNMD
ESFRDNVKLGNNSSLRVMGKGNIRIEVNGVKHCITEVFYVPELKSNLISLGQLQEKGIVVLIQKNSCQIHHPDKGLIIQA
DMTSNRMFLLKTESAAEKQMCYKSTIEEDTWLWHFRFGHLNFNGLKALQQKNMVKGLPLLQVPSRVCEECMVGKQHREPF
PKESNWRATRILELVHSDICGPVNPISNSNKRYFITFTDDFSRKTWIYFLTEKSEALIVFKKFKASVGKETGVFIKALRT
DRGAEFTSNDFVHFCEKNGIHRQLTAAYSPQxNGVAERKNHTIMNMVRSMLARMKVPKKFRPEAVNWSSHILNRCPTHAV
KSVTPEEAxSSKKPQVNYFKVFGCLAYVHTPDNLRTKLDDKSTKCVMLGVSEESKAYRLYNLETQKIIISRDVVFDEANG
WDWNNKQEKRAGVDLEEIETMNGVEEVTSREVEDEPVGHNSPRITEASPNVSRQRRPPSWMTDYVSGNELSNNENIAQIA
LTGGNDPTTFDDAVKSSKWRKAMDLEIQAIERNDTWELIDLPEGEKTVGVKWIFKTKFRENGEIDKYKARLVAKGYTQEY
GIDYSEVFAPVVHHDTIRLVISLAAQNDWSIYQLDVKFAFLYGELNERVFIDQPPGYVQKGKEQKVYRLKKALYRLKQAP
RAWYSHIESHFLKAGFTKCPYEHTLFVKHGKECEILIVCLYVDDLIFTGNNEDMFKEFKNSMLEEFEMTDLGKMHYFLGI
EVKQTSNGVFIGQKKYAEEILKRFHMEDCNSVQNPIVPGIKLNKDMGGREVDSTHFKQIVGSLMYLTATRPDLMFAVSLI
SRYMESPTELHYQTAKRVLRYLKGTTDFGLFYKKETINKKEAGDELMGFSDSDYAGDLDDRKSTSGYVFMLSSAAVSWSS
KKQPVVTLSTTEAEFIAATSSSCQAVWLRRLLEELCFKQDKPTVIFCDNSSVIKLSRNPVMHGRSKHIDVRFHFLRDLVK
NEVIELEHCPSNMQVADILTKPLKLEAFVKMRKLLGICSSLSLN
>Copia-39_ST#LTR/Copia 94-4653 via tfasty with Copia-73_ST, 79.0% SW:4517, 1 stopcodon. [Solanum tuberosum]
MAIDDQINIGTADAPPVIHGAPLLDHNHLLFLQPTDTPGSSLISIQLTGSDNYALWSRSMRIGLIGKSKLGFVDGRFPKS
QFAPMLHDQWGKVNAVVLSWIMNAVRPGLLSSVVYASNASKVWEDLKERFNKVNGSRVMFLHREIHTLTQGTVSVADYFS
KLRDLWDEFDAIMPCPGCACPESQSYLQHFEYQRLLQFLMGLNESYSQSRSQIMMMSPTPSVNRAYSMLVDQESQRTLAS
LTQGIHINDTSDSVAMMSHTRAHSSSSTAMLSNTRLYHSDVSGSSKGKKPQVICEVCGYKGHTKESCYRIVGYPPDWKGK
KKGVPSQYNPSYAGNTNSYAHLANVIPTGTGGRSFGYWPQQIGHQTPIQHYASHGSSPAFQMQAQHPMQTQHQRVVPQMQ
QCGLYQIPGDSQNQARPYFTPDQYQQVVHMLDQGTPDGSSSSKTTAGTVISLVSRYMNQNWIIDTGASNHMTSNKSMLKN
SQVVPQQASNQVQLPTGDVVSITHTGTSRIFKDQEISNVLYLPDFRYNLLSVSRLTKELQCFAVFFLDFCLFQDLSTGQV
KGIGREQHGLYVLQGGSCPTTITQTVVNTASQVPDCSHLWHLRLGHAPLEVLNKLVTLPHLSKPTKSHHCTVCPLAKQSK
LSFPSSVTSSQSVFQLVHCDVWGPYRVPTYDAKRYFVTLVDDYSRFTWLFLINSKSDTIVILKDFINKVQNVFSSTIKTL
RTDNGCEFINHPFQSVLSEFGIQHQTSCVYTPQQNGVVKRRHRTILEMARSIRFQSAMPLKFWGDCVSTAVYLLNRLPSR
VIEYKTPYEMLYMHPPNVNHLKVFGCLGYASTPRALDKFASRAKPAVFIGYSQSQKGYKLYDIATHSFFVSKSVVFKEDV
FPFKHIQGAVSPVFPVLDLFSPASHLSGSNSQQGSLISSPSTQAVADHTPLVLVPGAQSPVIPIIRKSTRPHKPPGWLQD
YVSAPKASSCLYPMPSYVSYSTVSPGHMQTLSPYACQHEPQSFREASLDPRWIEAMQLEIAALEDNNTWTIVDLPPHKSP
IGCKWIYKIKYKASGEVERFKARLAAKGFSQKEGIDYTETFSPVAKMVTVRTVIALAASKQWYLYQIDVHNAFLNGDLLE
EVYMKLPDGFARQGGSSKVCKLQKSLYGLKQAPRQWNRKLTEALEALGFKQSHFDYSLFTNKNGVDITVVLVYVDDLIVT
GSNHNLIKQTRTELQSKFKMKDLGELKFFLGIEVARSKEGIVMSQRKYALELIKEAGLSGSKPAGTPLKLNVKLTSEEYD
QYIRREDTDLLLKDPGPYQRLVGRLLYLTMTRPDLAFTVQVLSQFMHSPKNSHMEAALRVVRYIKGAPGLGLYLPAESTN
NLTTYCDSDWGACLQTRRSVTGYLVKFGEALISWKSKKQDTVSRSSVxAEFRSMASATAEIIWLTGLLKELDVEVQVPTQ
LMCDSKAAIQIAANPIFHERTKHIDINCHFVRKNFAGNDQTNHVPTKEQLADILTKSLGRAQHEYLLSLLGVKDLFSPSA
>Copia-39_Mad#LTR/Copia 387-5129 via tfasty with Copia-22_Mad, 3 stopcodons. [Malus x domestica]
MASNTIRIEGLLGMLTIKLNDKNFSKWVYQFKSVMKGYKMFDHFDGTAVCPPKFVIDKEHGVTSMLSEVFLEWESVDLAL
LGLLIATLSDESIEHVLGCKTTHEAWSNLQDRYASISKARVNTLKTEFQTLQKGGDSIDQYLSKLRNIKDQLIAANESVS
DNDFVVAALSGLPREYSTIRTVILTRDNSITLREFREQLLCAEREVDSMVNTMTHNFSGLYMQGSSSQSVxSQGSSSHSD
DIPCATVGTITRVPNGGSNLSIPYHPQGSVALPFNSHGSAALPVNPQGSSFSAPPFSSNGLMYSPDQFPLSSYVMPQSPS
VYPEFSNSYGFVGNGNASRSFNTSNNGSRPFFGPKSNGGYRGSNGRGQSSGTKSSGSTWQSWSGNTENRSYIVPECQICS
KRGHTAPNCWKRSTNPNQVGQVVECQICGKRGHSALDCHHRNNFAYQGTAPAPSLTAMQAQGSSTFLPQDSWIVDIGASH
HMTADVNSLQQVTPYQGTDKITIDNGEGLPIQHIGSAQLNTLPTSLLLRTVLHVPNIAVSLMSVQQLCKDNFSWFICDDH
EFFVQDKVTKVVLYHRRSNGGELFRIPVxLLSGSSTHSSNTSVALLGQKVKTAIWHQRFGHPSNAILSAMLKQSDIVSIP
DDQQHLCPHCISGKMSRLPFSAKTETCTFPFQKVHTDLWGPSPTKSIDGYKYYVSFVDEFTRFVWIFPLINTSECFDVFR
QFYSFVLAQFNVGIKCLQTDGGGEYVSTRFANFLKQKGIIYMLSCPYTPQQNGIAERKHxHIVETAITLMTDAKLPQDMW
YHACAHSVFLINRMPCSVLAQQSPYQKLYNINPQLQGLKVFGTAVYPYIRPYTANKLQPRASLCVFVGYAPGYKGVICFH
PPTRKFIISRHVVHDESQFPYKNVSITQTGSSDQASISQSLQSSVLVPVPPPPRSISTVSIGSQGIESHHSTDLSSFNDI
ATSAPPSANTDHTGSSSASETTLSSSSTALVLPVLDPAQLEVILPLDSFPNDLSHSAPISRMQTRLQTDAISRKNYAGFL
ATFPQLHTMKLDPSDHCHSGFSFVAALHDISEPTSFRTAATHAHWQHAMQEEFDALQSQGTWILVPPPAHRSVICSKWVF
KLKKNPDGSISRYKARLVAQGYSQALGLDYFETFSPVVRHTTVRLIISLVAQYKWELRQLDIKNAFLHGDLEEEVYMKQP
QGFMDSNHPEYVCKLVKSLYGLKQAPRAWNAKFTGYLPAMGFHMSQLDTSLFIKRDDNDVIVLLLYVDDIILTGSNASKV
QAVIQELGDVFELKDLGKLSYFLGLQLTYKDNGDIFINQSKYAQELIHKAGMDTCKPAPTPCKPNTQLLLSEGTHLIDPT
TYRSLVGALQYLTFTRPDLSYSVNAACQFMNNPTDVHYALVKRILRYVQGTINCGLTYSASSDQSITAFSDSDWATDPNT
RRSITGFVVYMGNNPISWQSKKQSSVSRSSTEAEYKALAHCAADMAWIRLMLKDLHQFLSYPPLLHCDNLSALALCVNPV
FHTRIKYLDTDFHFVREKVQKKDLLVQYVPTEDQTTDVFTKGLHGPAFYKHCCNLRIGYPT
>Copia-40_BG#LTR/Copia 161-4585 61.5% sim to Copia-28_BG, SW:1405, [Blumeria graminis]
MADGLPNHIEQLKGQSSYRIWSVQIRSVLQTKGLWPYVLGKYSEPQFPEEGESKRDFNERLKEYTIDKAKATGILQQSLS
KDIILDVEFIDEPYEVWSYLKTKYEPNGLAHQFAIYQEWQSVQYDGKDLEDFIHKYTQACSRLKESKVDVSNTIKLYQFI
TIISPWFDNFSAGIRDKLRSCKEDKDLPLLDEIISNLLDEDKAQKYNQAVNFARKDRSSQSNSREGHIQKVELPRNEIDS
TCSHCGFEHREKDCWHLHPEKAPKRFKPKRCDEIGCKLSQRYSDDEFKDGKIKTNPTKPNRNFFSDIPSDCNFMAQVFTD
NSQQPLQLTKNLSSISLPAVSEDAIKALKSSESIHSWILDSGASTHFTHDLENMFDYETCDVRVEFGKGSAKALAYGSVR
LEVLGDKKRTVTFSEVYYVPDMRANLLSTEKLRNKGLFYRNDKQILFTENAIIAKVYSHQKVPHILLASSQINYGNFLAM
NSHILTDSPANTSIWHARLGHLPEARLKQAMKVTKGIKIIGEVKQKNCHSCEEAKSKRIISRVTSPRSKEPLTHWNIDVV
TVTPESIGRARYFTLMTDAATLTHRVGFHANKNGAYVHIQNLVDYVKTNTGTAVKVIHIDGGREYGGIKLTELCASNGID
LHVTTPHNSEQNGRAEVSNHYVCSVARKLMLHGKVSKGLWSEAIEAAVYIINLTPSATLGGITPYQALAEHFDWDPKIPY
VGNLKVYGCKAFVLDHNIKRSDKFASRALVGKLVGFEAHNIYRVWLPKEHKVIRSTNVRFDEECVDFENTKENPDEIQLV
LPEDDVEQPKPKDDAQQGGVQVDIFQQQDPSVGDSGGELEDIDEAQTDNALGSGNFINRNEDYQTNLPSLGTAGTPIIDN
PLELRRSSRIKKKSCSGAEHTEYQNRSSKRLLFSHVGNQSRFAQPKSLPHRAFIALTNSIDATEVKTPNHYREAIQCPQK
EQWIQAMREEIASLKENKVWKMVPRYAIDKKSIIKGRWVFKLKLGANGMPVRFKARWVVKGYTQQKGIDYDETYAAVTKA
TTLKLFMAMIAHYDLEARQYDITTAFLYAAIRDHEIFVEQPHGFEEDGDHVCLLLKALYGLKQSPLLWFQELTTFLVREG
YTPLKQDPCIFQHHIHKLIVAVYVDDLITASKSIKTIENAVARISDRFKMRSLGDISFYLGCRIIRNREQRKLYLVQDAY
VQQLLDKHHMQDAKSAVTPMEVNNKLQQAVDGYLAKSNLVQEYQSLIGGLMWPAMQTRADIAYATSQLAKYMNNPTQEHL
DAARRVLRYLKGTPNHGILMIGTESDIPYIEGYTDSSYADDRDTARSTGGYLFTCAGGLISWKSGRHPTVSQSTAEAEYI
SAALAAKEAAYIASLADEFMFLKDVRPIVIFGDNEASISLAHKPIVDGRTKHINVKYHYLRQEVENAAIKFVWVPTKDQS
ADGLTKPLLKVAHERFCKLIGLVDCTDAIIETDGD
>Copia-43_BRa#LTR/Copia 70-4140 via tfasty with Copia-59_BRa, 88.4% SW:5071, 2 stopcodons. [Brassica rapa]
MGDKDIVVSTSKPRESSHSTIQCPMLTTTNYTVWSMRMKVALKVHKVWEVIEPGAEEEEKNDLARALLFQSIPESLVLQI
GNLDTSKEVWEAIKSRNVRVERVREARLQTLMDEFNRVKMKETDTIDEFSGKLSDISAKSSSLGEIIEEPRMVKKFLSSL
PRRKFIHVIAALEQVLNLNTTSYEDIVGRLKAYEERVKKEDTQNDQGKLMYATLDSQDAQDGPGRGKGRGGRFNRGRGRG
RWNNQRDWKEGRDTTRVVCFRCDKTGHYAYNCPDRLLKLQEVHETKNESTREAEELMMHEIVYLNEEKVIPKDITTRDDG
DNMWYLDNRASNHMSGNREYFSSLDERITGKVRFGDDSRIDIRGKGSILFIDKEGKRKVLASVYYIPELRSNIISLGQAT
ESGCDVRMKGNYLTLLDRDGNLLVRAVRSKNRLYKVAMEVDKCKIKCLKVSCDGVSATWHARLGHVGLETMKTMINRDIV
IGIPHITVDRETCESCLMGKQTRQSFPKATLYRAKQALELIHGDLCGLISPPTAAKKRYVFVLIDDHTxYMWTILLREKS
EALESFKRFKKSVEQETGNTIKTLRTDRGGKFCSNEFQVFCDNHGIKRHLTAPYSPQQNGVVERRNRTLMEMTRSIMKHM
DVPNYLWGEAVRHSTYLINRVATRTLPGVTPYESFKNKKPNVQHLRVFGCVFYARNETPHLRKLDDRTKALVHLGIELGS
KAYRLYNSTNRQIIVSRDVIFDEYKRWKWKTIREETSEPCSITFDVQHGGEEEHKNEEGNEEPSEEDEVPSDEEEHEEEE
MIVRRSERVSTKPKYLDDYVLLMEELETExILLMINEEPWDWNEAKREKVWRLACEDEITSIKKNRTWSLVDLPYGCKAI
GLKWVFKLKRNADGSINKHKARLVAKGYVQREGIDFEEVFAPVARLETVRAIIALAASNSWKIHHLDVKTAFLHGELEEE
VFVSQPEGFKVKGKEDKVYKLHKALYGFKQAPRAWSIKLNSILKELGFVKCSKEPSLFRRITNGSLLLVAVYVDDLLVTG
SRVEDIQAFKLEMETKFEMSDFGPLHYYLGIEVIQGKDGIILRQERYATRILEEAGMSECNNVHIPMDAGLKLSKAPHEE
SINEKEFRRSIGCLRYLIHTRPDLSHCVGVLSRYMHDPKISHGAALKQVMRYLKGTVSLGLYYKNDGKKDVELMGYSDSS
YNSDPDDGKSTTGHIFYLNGSPITWCLQKQEIVALSSCEAEFMAATETAKQAIWLQDLLRKITEGAIAKAVIRIDNKSAI
ALTKNPVFYGRSKHIHSRFHFIRECVEDGLVAVEHVAGVKQKADMLTKPLGINKFKEMRSLVGIQDVSNEVLKLKGK
>Copia-41_Mad#LTR/Copia 323-4585  [Malus x domestica]
MKMFNIKLSSYVNETCSKEFLAQRCYLVLHAIFIVCFTNKLMTSSVNPMSLNFSSIEPLNGGNYKKWRQDVEIILGLMDY
DLALREDEPAPVDATSTTAQRLKFEKWEKANRMALLVIKRSIGEAVRGGLPASDKAKNFLEGIEAKFKVSEKGEIGNLMT
TLTTLKFDESHTVREHILKMVEXAAKLSDLEVPIDDSFVVHMALNSLPESYEQLKTSYNAQKEKWSLNDLISICVQEEAR
MKRGKQEVVNVVSTDKGKKHDVFSGKPSKPFNFSHSAGNNTLSSKGPQGFRVDMEKVKCYFCKEYGHFKRDCPKRKKWGN
KTGNKTKNVFVCVNINLVEVPPNSWWFDTGCSVHITNSLQGFTRREFARNEVYEVHVGNGNKVAVEAIGTLKLKLSTNFE
LELLDVLYVPSLTRNLISASKLVKTGYAFIGDDESIRIFKKCNLNLLLGICLLENDLWRLHCDVVTIPNCMQVSTVLKSK
RSLVNEKSSMLWHRRLGHISQKRLELLVKENILPRLNFIDLQNCVDCWKGKLTNTKKIGSTRSQKLLEIIHSDVCGPFPT
KTICKNVYFVTFIDDFSRYAYVYLISEKNEVASCFKTYQNEVEKQLETSIKILRSDRGGEYYGRYTEEGQQKGPMARYLE
ENGIQAQYTTPGTPQQNGVAERRNRTLKEMVRCMMSRTNLPMFLWGEALKMTNYISNRVPSKSVNKTPFELWTSRKPSLN
HLHVWGCLAEAKMYNPTERKLDSRTVTCHFIGFPEKSKGYRFFSPSLSTRIFXTNNARFIEDQQSSNEGLKEVVFEEEDL
ISSSSFKETPMHADTIDFGDVXILSHVDCMDQHELVXVQPQILEMQXNAQQIXMQQVPVQRRQSQRXRRSPFSNDYLVYV
GEVEHEEGIDNDPITYBQAINCDKANDWKAXMKDEMDSMYFNEVWELVERDESIKPIGCKWVFKTKRDSSGAVERYKARL
VAKGYTQKEGLDYSDTFSPVSSKDSLRVILALVAHFDLELHQMDVKTAFLNGVLDENIHMVQPPGFXKEGNEHMVCKLXK
SIYGLKQASRQWFMKFDEKVTGFGXVENKIDDCLYLKVCGSKFIFLVLXVDDILLASNDLNLLIXTKRLLSNTFXMKDMG
DATFVLGIEIIRDRKRCLLGXSQXXYIEKVLKRFNMESCAKGEAPMSKXDKFNKSQCPXNDIEKQSMSNRPXASLVGSLM
YAQVCTXPDLAFXVSVLGRFQANPGEYHWXAAKKVVRYLXRTKSYMLVYGRIERLEVIGHCDSXFAGCEDDRRSTSGYVF
LMAGGXISWRSAKQKTLATSTMQAEYISCFEATQQXMMLKNLISEMRIVDTIAKPLVIYCDNKAXVFFSKNNKKSYAARL
MDVKYQSVKEKVKAGMVSIEHIDTTLMLADPLTKPLAVGVFKNHVANMGVVESFDSATVWK
>Copia-47_BG#LTR/Copia 242-5353 via tfasty with Gypsy-26_BG, 57.2% SW:1836, 4 stopcodons. [Blumeria graminis]
MSNSSAEQKSLGTTEEITAYVKNRLELYKAKGAKDDSLWERWLEDFENWDVDQFSKIDSDLRREFRDFLISRGVYMTPNP
KGKHIDQQLATEVKREEFHEWTPEELIYYRKKNPFGVSTRCDPKDPNYVEEESILGATAEYKKYQDFRVDNKERIKDQTE
AEKGKGKERSGQTTDDSNYAAIYSKSSGKPHNPTSSPSSTPVILPSTTHRNETHWEDRPLHKSRQLESLVRMYKEEDKYS
DGTDSFDYKRKIFLNNCNNACVEKKYLKDALTIMFTGDASEKYLDLTLHDENLSFDERCNIIKSHYETVHWVNRRETIWN
TLNLIEEMRKSPDKLQAFNNLEKELRRVQRGLESHAGDAALRTRIINACSGVADLHFVLFSPAKTAEGVCADIRARFMQL
SLSGTSISQYHQLSHVEHNSFDNSYLAERQYQPVRGSSTGRGSQNFRGRRKIGSGPSMVKSTWNKRCIVCKKTNCWSSEH
TPEEQRAAFEKIKKTYPSKDENAVQQFVLQFEGESLDAELHHFLAVNELTDEPESEDGYCYQEESQNFLISEIGGKNVAG
YLQDLTTFHKFTAPKTKYAASKQEEKMLITVASLDFDFPGVNKSFDLETDTPAELHLFRNVFSIGNDYDERYDERVFHGV
LVDTGAAGRSTVGVGQAKALKQLQKELKVDRTRAGEVKISGIGDGVFISIGSVTLDTPVGRVTFHILPCNTPFLLGLQDM
TRLGVTPDVQKNVMIKNQKPVAALIRKYGHLWMTLGHFQSLFIYESNNEPICYLTEQQIRTCHRRWGHPSASRMWKIFRR
AGHDVDIKIIDRISKFCNDCQLNAHRPLRFKFTLTNKDVPFNHTVYVDVMHLEDGPAVHLIDAGTNLGSADFLTGPDKEG
AISTCNSIERCWNNVYIGPPENLIHDAGKNFASAEFRATASGWKTRVVEVPIEAHNSIGKVEQAHKNLRRAYTIFKQQFS
GQNVDRHSILKMAVKALNDSAGPDGLVPTLCAFGAYPRITWNDAPAPVSKQRADAMRKAMEELQKHRATQLVNQAKNMRN
GPQNAHLQDVPMGGKVRVWREATKSTRGRWTGPFEPYNKEGETITVIINGEKKNFRSTSVNKWFQDDDTNNQRDASSDQP
ATGPESKTENEPMPPHQLRRSRREGRFAGQYQTEDHLDIAQKNNLIYTYLKMKKRFGSPxNYAQRASLKPPDRRSPPQTK
RRxTAxWPVKSSDSCLRTSRYWESEYTNVELSRELKARKHLRPSKNLAxLYRHTTMKVNLWSDPVAYCTTGKPTTYFCFA
ICLIRQFGLILFLRDIQQAYTHSRTHLIRDIYCWPSPEIVQAKNLPPGTIMHVVKPLYGIPEAGNHWFDTWIKYLTKELA
LKSSCFDPCLLVTHSKPFSISGMQVDDTLFLGTEEFLRLEDAKLIEAKFPAKPIERLSEKNPLHFNGLLITLRDNALHIE
PNGQGKKIKLVNLQDPNRLDIYKRQRALGAWISSNCQPLVAFKLSRAAQFQNPEDQEINDLNSALREQQKDVNRGLRYIS
LDIDKLKAYCWVDGSFANNKDLTSQIGFVITLGNETFGENKFTFCGNIIHWSSTKCKRVTRAVLASELYAMTNGIDIAIP
LCMTVNQIMDQLALPMVPLIVCTDSRSLYECLVKLGTTKEKRLMIDVMAIRESYERKELAEIRWINGKDNPADSMTKVNA
TSALNKLIDSNELTVRLEGWVERK
>Copia-56_Mad#LTR/Copia 153-4497 via tfasty with Copia-69_Mad, 88.7% SW:5432, 1 frameshift. [Malus x domestica]
MAEESSVNLEGDGFHATPPSPHSDIDINPNQRLSSVLLNEFNYLPWERAVSLALGGRSKLGYVNGAIPMPETTSPEYDAW
LCKDQLVMSWLLNSMDRKIAEIFSYAESSMTLWKNLKEMYGNQNNAARVFQLKKDIAGLQQEGKPFVQHLGKLTTMWNEL
NVYRPHTIDAAVLTKRAEEDKIFQLLASLSPEFEDLRSHILMNPDLPSFSSVCATIQREEVRRKVMTLDIKANIPEARAY
FSNQKLGEERGYKGKKTGLKCSHCDAGGHSRDRCWILHPELKPKFPRDNKGVSKGSYNPSYKANHVATTSSEGALKFTTN
PAALINEFAMFLHKKQGLGDSEGPLNQCDNNQTALLGQFAGFLAGNEGVVQRDIPGILHSFSTALNIGNVHDYWIIDSGA
TDHMTNKSTNLHKFEKFSIPSQVSVANGKNAMVVGKGKIHLISSDVESEALYVPSFPFQLLSVGKITNSLNCLAIFSPKN
VIFQDVVTKKTIGEGFFLNGLYYLSKHIQVPKVFQVTSSLAQEQQLWHQRLAHPSEKVLSTLFPNMCKVTSPCDVCHFSK
FTRLPFTSSLSRASNPFEIVHSDVWGPILESFDGYKYFVTFVDDFTRITWLYLLKFKSEVMEVFQDFHRLVATQFASKIH
ILRSDNGTEYMSHNMSHYLSTHGILHQTSCVGTPQQNGVAERKNRDLLEKTRALMFHMNVPKKFWSQGVLTAAYLINRLP
SKVLNFKSPYEVLKNRKINFSHLRVFGCTCFVHIQAQNRDKLDPRAAKCVFLGYSSTQKGYKCYNSTTRKMVVSRDVKFE
EHVPYFSQSLDYSRQGEHLMDLFPFPYPNGEDATCTPSDHVPDDVNLHSVEHLEDETPSSSEIHTAPSSDPSNHDVVQIP
VVQSPTVRRNPARERKLPSKLHDYVTYTARYPVTDVIDYSKVSSSFATFLSAINEAREPQSFQEANLHSEWRNAMAEELQ
ALHENNTWTIVKLPKGKKAVGSRWVYKTKFHSDGTIERNKARLVARGFTQTYGVDYKETFAPVAKMNTVRVLLSVAINNA
WPLFQMDVKNAFLHGELEEEVYMKLPPGHPQSNNPEMVCKLHKSIYGLKQSPRAWYAKLSHVLERVGFCRSIADSSLFVR
SSSVGKLVVLIYVDDLIVTGDNMSEINALKQYLNNKFAIKDLGTLKYFLGIEMAHSHKGFFLNQRKYVMDLLHEAKMTDC
KPARTPLDSNLKLKTHGDPIPNLSYYQRMVGKLIYLTITRPDISYAVSIVSQFMHSPSMDHLKIVHRVLRYLKGSVGRGI
LMRNNSHTRISGYTDADWAGNSLDRKSTTGFCTFVGGNLVTWKSKKQSVVARSSAEAEYRAMASTACELIWLKSLLLALG
FPHQQPMSLHCDNQAAMHIASNPVFHERTKHIEVDCHYVRNQVQSKVIDTHYTRSHDQLADIFTKGLTSANFQRLLFKLG
SINPFDPA
>Copia-53_ZM#LTR/Copia 43-4332  [Zea mays]
MSAHGRRDDADGGRRRRSLSPVFPRGRRGGREVVIERIIERSSTAATYPMLSKTNYAEWSLVMQVNLQAQGLWEAMEPGT
DNFRDDRNALAALLRAVPPEMQAGLARKASAAEAWDSIKSVRVGAERVKEANADRLRREFTGLSFRPGESVEDFAGRAST
LANQLRVVGDDIAEKEVVKKVLHSVPDNLEQIALSIETLLDLNDTTVEEVTGRLRAVEQRKTAAATTTKEGSGSLLLTEE
EWLARFKSTDGGSRTGSSSGAKQSSGRGRGRGRGRSRGGGRGGGRARRDDECHNCGKLGHWARDCRGKKKVEQAHTTQAE
EDADAALLMITANTAVTKPKTEVHLDEGKLFVHLGEGSNDDSTRWVLDTGATNHMTSSKEAFSDIDAGVQGTVKFGDGSV
VAIEGRGTVLLNCKNGEHQALTDVYHIPRLTTNIVSLGQLEEDGFKILLLNGFLKVWDRRRRLLTKVPRAANRLYVLTVD
IGKPVCLAAQGNDAAWRWHARFGHLNFRSLRRLSQQEMVRGLPSLDHIDQVCDSCLAGKQRRRSFPTEAKFRAKNKLELV
HADLCGPIAPITPSGNKFFLLLVDDFSRYMWLILLSSKDQAAESIIRLLGGVETQAGRRLGTLRTDRGGEFTARSFADYC
AAQGIARHLTASYSPQQNGVVERRNQTVMGTARSMMKAMRMPSWFWGEAVTTAVFLLNRAPTQSVEGRTPFEVWHDAKPP
VHFLRTFGCVAHVKTVGKYLSKLEDRSVPMVFMGYEIGTKGYRFYNPTTQCVLVSRDAVFEEERAWDWTAEHPSALEDAF
EPFCVEHDVAAVAGGVLEGTASPTTPNAALATPPSLSATSTSRTSTPTCGSASRTPQAPGSGSGARSALLPEVDDNLDVD
PNHAPLRYQSITDIMGQEPAPGLVEQASDQELLMATGNEPLTTEEAMSSEQWRTAMLEEMASIEHNKTWTLVNLPAGQRA
IGLKWVFKIKHNEHGDVTKYKARLVAKGYVQKKGIDFEEVFAPVARMESVRLMLAVAAHRGWSVHHMDVKSAFLNGELEE
EVYVSQPPGFVAAEHKNKVLKLHRALYGLRQAPRAWNSKLDTSLLQLGFARSRNEHGLYTRDTQQSRLVVGIYVDDLIIT
GESTEAIDVFKQEMKSLFRMSDLGGLTYYLGIEVRQEPNCIRLSQTSYAVKVLENAGLSTCNPSETPMEPRLKLLKDSDS
PQVDATKYRSLIGSLRYLMNTRPDLAFSVGYLSRFMQDPRQEHLVAMKRVLRYIAGTVNHGLVYNKMGEELSLTGYSDSD
HGGDANDGKSTTGVIFFLNECPVTWQSQKQRVVALSSCEAEYIAGAVGACQGVWLKRLLADILGTNLASPVLKMDNMSAL
ALSKNPVLHDRSKHIDLKYHYLRECAENGEVQLQFVRSEEQCADILTKALGKTKFQEFRKKIGVVRHDGD
>Copia-56_ST#LTR/Copia 79-4373 via tfasty with Copia-74_ST, 66.9% SW:2925, 3 frameshifts and 4 stopcodons. [Solanum tuberosum]
MVTPTESVDVTSSSNAVTAISLDNSSLYFLHPSDSPGMNLINFVFDGHGYGGWRRSILIALSAKHKLGFIDGSYAPPTSD
SPNFHLWTRYNDMVTSWLLNSLSKEIVGSVIYSKSARHLWNDLADRFGQANGAQLFHLQKGLADSVQGNSDIAGYFTKIK
KIWDELDATSTxEVCCCNCTCGGKQKMVKSTQDEKLIQFLMGLNDVYAGIRSNILMMTPLPNVNLANSFLIQDEKQKERY
VSSTFPRKSSSFLAAHQPFPGQRSQPGELRGRKSSLTCSHCKKPGHSIDKCYMIIGFPTDFKFTKGSRFQAGGKWSSLAS
AKQPVANMPAEQFANFAHLVQLAxAKNMRAAAADIKANTVDCAGNIFHNPMAYLAHANTNSWILDLRASYHMSYDPVYFT
TLILLSPHLLIRLPNSFKVKVTHIGSVPLFPNLLLQNVLFVPSFRVNLIYVYHFCKQFCCNLIFSVASCLMQGPSVKTPL
VLGKAKDGIYLLEPSIECSFVSASSFNSSSKSSNLTSSCISVSSPLSISVNSQSDVQIWHKRLGHMSFDSMKNISLSTSQ
SHFDCICDICPLARQTKLSFSSSYIKTKGIFELIHVDTWGPYKSPTYNGYKYFLTIVDDYSRATKTYLLSSKSNVFSTLK
DYLVLVERQFGAKVKIIRCDNALELGGGAILSQYFLSQGIVHQTTCVHTPQQNCVVERTHRHLLETSRALLHQSKVPISH
WGDYLLTAIFLINRFPSSVLKGKTPYELIFGTPPSYSFLKTFGCLCFVSTLSHNRPKFDPRAVPCIFLGYPPGKKGYKVM
KLVSKKNFISRDVSFYEHIFPFHTQHSATPIFPSSSSIHDPTMDSHSLSIPPLSPMSSTSSPSHESVDMLSTPSHVTSNS
PHNVVYSSPDHLITSPPPVAAPRKLERVHTKPGYLDNYVCNSLYFADISSSCFNASVTTPVFPFAALSISNQQVLNSIST
IIEPRSFSQAILHLGWQKAMESEFEALEANQTWDVVPLPPDQRALPCKxIYKVKHKADGSVERLKARLVVRGDIQREGID
FNETYSPVVKMTTIRCLLAVAVKRNWLISQLDINNAFLHGNLQEDVYMKFPPGMDPPSPNFVCKLRKSLYGLRQASRQWY
AWLGAALQFKGFVSSLNDYSLFYKHSGSFISLVAIYVDDIILTGNDPEELNLLKDFLHKEFQIKDLGDxHYFLGLEVVCE
AHGLIVNQRKFTLELLVDYNCEQLPEVSSPIDPSQKFSADIGDVLADPFSYQRLIGKLNLRMSPGQGLFMSSDPSFSILA
FCDADWASCVDSKRSVSGYYISLGGFPISWKSKKQVSISLSSAEAEYRSMRRIVAELTWLDRLLHDLSASAPLPIPVHSD
SQATLHIARNPVFHEWTMHVELDCHFVRQQFISELSSLKFVPSSAQLADIFTKPLSGPSHCSILCKLGVSPL
>Copia-57_MLP#LTR/Copia 79-4244 via tfasty with Copia-2_PPa, 58.6% SW:1326, 1 frameshift and 2 stopcodons. [Melampsora larici-populina]
MGHHDSGTKHSTIEQLNDDNFSQWRVNMYGWMLEHSLGIFVSTPHPTIPNQRNRAFGVIIQRLDQASNARFLNEENTLNP
NLLWDAILEHYQSTDAASQSRVFTTFLRISFSTLSQFIKDIRQGMKALVDSDVTNVIGDVLLAEIIVHKLPESLSTFKEL
QYSKRPLTTSAVLVALDNHHADDRENNQPDVAAAMSSRRSNAVNRNVASSNRNNNNNRRPICSNGTHNPLTKHHQDNCWT
LFPDKRPAHLRQQASQANLPVVNSTRYVDDNVFSVQNASAAYVHATTSAYRSRALAVNTVPNNFAKLLDSGCSDHMTSNI
EDFSTYVPKWSTVSLADGSIIQIIGEGLVHASSNGSITSFHAYHVPKVNGTLLSLGKLMLEGCSLHSKEDSFVVKKDDSP
ILYGSICDGVLELDLNLGKLALPTIIASSARLLTSYDTLHRLAGHTNPDRLRILFHCSPPPEWTCEACILSKGHRLPYKM
SLPVSTTPLQFVHGDLSGKIAVTSLGGASYYFKLTDACTSYKYIYPLKLKSETFARFLEFKSEVETFHERKIISLVNDRG
GEYMSRDFLKCLKENGTTMHLSASYTPQQNSVAERGNQTTSEKARALLKQADLPASYWAEAVTTAVFLENVTPMEKHGNK
TPYKLWHQRPFDYSCLHPFGCRCYVLIPKHLRDGKFGDTTAKGILLGFQIGMHNFxVQRENGSIIYSHDVTFNDDVFPGA
GKSHDSSFVINDEEESFQIDTHSNSDLDQTPPVSPHVPTTPFNSPELNPPDDSRALICCQRTPKEAPIAGYNGDGDLVMW
HPLPSPPLPSVPTKHSWDWQLASVPAIQDISSSINESNILPEGSKRHRIQAARKIQRHRVMTARRILRARSARLANIPFP
TSLKEALLREDASDWLNAIQAEMKGMEDLKVWDIVNLPEGDHAIGTTWVFEKKFGAEGKLIKYKARLCAQGFSQRPEDFG
DTFAPTGRLLSLRALMDIAAVQDLDVHVMDVKLAFLNGVPKETIYLRIPKGYQFPGTSEKSVLQLNKSIYGLKQSPCCWH
DVIKAFFISINLKQTPSDPCVFVSNDPNWIVYVHLHVDDMTIASNNVQCFKDLINEKFSMEDLGEAKLILGMKVTRDRKA
KTISLSQPQYIGNLLEEYDMTEANAVGSPMLDNTHLVPGTEGSRKEFIESGEDYRHAVGMLMYLSLATRPDLAFVVSQLS
QHFERPDMVHWMEFKRILRYQKGTQHFGIVLGGDNLNLQTWSDSDFAGCPYTRRSTTGMITQVGSGCVNWxAKKQEGVAG
SSTEAEYRSVYEGGQDLRWFTQLMKDINQPLPVIPLLLADNQGTIGLSKNAQFQNRTRHVDVKYHWIREHVDREHFKIKY
VPTADMLVICSRNLYHCTNTKISVEELFW
>Copia-56_VV#LTR/Copia 39-4600 via tfasty with Copia-74_GM, 85.2% SW:5251, 1 frameshift and 2 stopcodons. [Vitis vinifera]
MAKTAMTGASKTSSSSEATTENVQSETAMRSSADFSTSLSSFQLTIHKLNGKNYLEWAQSMKLAIDGRGKLGHLNGEVSK
PVADDPNLKTWRSENSLVIAWLINSMEPAIGKPHLFLPTAKDVWEAVRDMYSDLENSSQIFDLKSKLWQSRQGDREVTTY
YNQMVTLWQELDLCYEDEWDCPNDSVRHKKREENDRVYVFLAGLNHNLDEVRGRILGRKPLPSIREVFSEVRREEARRKV
MLTDPEPKSNPEIESSALVSKGSDLDGDRRKKPWCDHCKKPWHTKETCWKIHGKPQNFKKKNGSDGRAFQTMSADSQGPQ
INSEKPNFTKEQLSHLYKLFQSPQFSNPSCSLAQQGNYLIATLSSIKSNVHCPWIIDSGATDHMTGSSQIFSSYKPCAGN
KKIKIADGSLSAIAGKGSVFISPSLTLHNVLHVPNLSCNLLSISKITQDHxCQANFYPSYCEFQELTSGRTIGNAREIGG
LYFFENGSESRKPIQSTCFESISVASSDDIILWHYRLGHPSFQYLKHLFPSLFRNKNPSSFQCEFCELAKHHRTSFPLQP
YRISKPFSLIHSDVWEPSRISTLSGKKWFVTFIDDHTRVSWVYLLREKSEVEEVFKIFYTMVLTQFQTKIQVFRSDNGKE
YFNKALGKFFLEKGIVHQSSCNDTPQQNGIAERKNKHLLEVARALCFTTKVPKYLWGEAILTATYLINRMPTRILNFKTP
LQVFTNCNPIFRLSSTLPLKIFGCTTFVHIHDHNRGKLDPRARKCVFVGYAPTQKGYKCFDPISKKLFVTMDVTFFESKP
FFATHLQGESTSEDSDLFKIEKTPTPNPNNLLEPSNSNQFVYPNIETSGLDTTKSDMSFEKTAEILGKKNGVLNIESLDG
SSFLPSHNQNHSNTNNGNRTSTKNSELMTYSRRKHNSKESNPDPLPGHESELREEPNSSECPGNNQTDSCQPVQFISNSN
SESFDDLNIPIATRKGVRSCTKHPMSNYMSYKNLSPSFFAFTSHLSLVEIPKNVQEALQVPEWKKAIFEEMRALEKNHTW
EVMDLPKGKTTVGCKWVFTVKYNSNGSLERYKARLVAKGFTQTYGIDYLETFAPVAKLNTVRVLLSIAVNLDWPLQQLDV
KNAFLNGNLEEEVYMDPPPGFDEHFGSKVCKLKKSLYRLKQSPRAWFExFTQFVKNQGYVQAQSDHTMFIKHSNDGKIAI
LIVYVDDIILTGDHVTEMDRLKKSLALEFEIKDLGSLRYFLGMEVARSKRGIVVSQRKYILDLLKETGMSGCRTVDTPID
PNQKLGDTNDGNLVNTTRYQKLVGKLIYLSHTRPDIAFAVSIVSQFMHSPYEVHLEAVYRILRYLKSTPGKGLFFKKSEQ
KTIEAYTDADWAGSVTDRRFTSGYCTYIWGNLVTWRSKKQSVVARSSAEAEYRAMAHGVCEILWLKKILEELKRPLEMPM
KLYCDNKAAISIAHNPVQHDRTKHVEIDRHFIKEKLEASIICMPFVPTTQQIADILTKGLFRSSFEFLISKLGMIDIYAP
T
>Copia-53_Mad#LTR/Copia 17-4074 via tfasty with ATCopia78, 3 frameshifts and 3 stopcodons. [Malus x domestica]
MANNVMAAFQVPVVNNNNFDNWSIKMKALLGAHDVWEVMEKGYIELEDEDTLIQAQKESLKDSRKRDKKVLYFIYQALDD
NGFEKVSSATSTKxAWEKLQTSYKGAEQVKKVCLQVLRGEFESLQMKGSESISDYFSRVLVVSNQLKRNGEKLDVRIMEK
ILRSLDPKFEHIVVTIEETKDLKEISIEHLMGSLQAYEEKHKNRQGNDEQLLKTHVQPKKKEETFNNERSQYERSRGQGR
GRGRGHGRGRGWNFNNHSNYERSTKGGERGRSNLRYEKSQVQCYNCQKFGHYAWECRAPSNRPDEKVNYVKEENGVMLLA
CKNDGDQDYTWYLDTGASNHMCGRRSMFVELNESVSGNVSFGNESKIPVKGKGNIQIPLKNGGHQLISNVYYVPNMKSNI
LSLGQLLEKGYDIHMKNYSLFLRDDQGRLIVKVKMSKNRMFPMNIQNDIAKCLKHCYKDISWLWHLRFGHLNFGGLELLS
KKEMVRGLPCISHPDQVCEGCLLGKQFRKSFPKESTTRAKKPLELIHTDVCGPIKPNSLGKNNYFLLFIDDFSRKTWVYF
LKQKSEVFGAFKKFKAAVENESGCKIKAMRSDRGGEFTSKKFQEFCEEHGIRRPLIVPRSPQQNGVAERKNRTVLDMVRS
MLKSKRLPKGMWAEAVACAVYLSNRSPTRSVWGKTPQEAWSGRKLGISHLRVFGSIAHVHVSDEKRTKLDDKSEKFIFIG
YDSNSKGYKLYNPNNGKTVISRDVTFDEEGEWDFGPHAGDLHFFPQFEExNEQRMMEQVREVQQESTTSPASPTSTNHGN
SPASTSSSRSLNEREVPRTRNLRDLYEVAERLDNPTLFCLFADCEPVDFQEAVQDTKWREAMDDEIEAIQKNDTWELAIL
SKGHKAIGVKWVYKMKKNANGKVERYKARLVAKGYSQRAGIDYDEVFEPVARLETIRLLISLAAQNKWKIQQMDVKFAFL
NGVLEEEVYIQQPSGYEIKGHEDKVLKLKKALYGLKQAPRAWNSHIDKYFQENNFTKCPHEHALYVKIKDEDILIVCLYV
DDLIFTGSNPSMFEEFKRVMTKEFEMTDIGLMAYYLGIEVKQNKEGIFISQESYTKEILKKFKMDDCKPISTPVECGVKL
TKHDxGESVDPTFFKSLVGSLHYLTCTRPDILYVVGLISRYMENPTTTHLKTAKRILRYLRGTVNFGMFYSNSDSYKLVG
YSDSDWAGDSDDRKNTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEFVAATACVCYAIWLRNLLKELSMPQEEPTEIYVD
NKSAIALAKNPVFHDRSKHIDTRYHYIRECITRKDVQVEYVKSQDQVADIFTKPLTQEDFIRLRNSIGVTRQD
>Copia-47_SB#LTR/Copia 107-4938 via tfasty with Copia-35_SB, 1 frameshift. [Sorghum bicolor]
MAGSVHPSATDEVERKRQEDARAARRAALARAEEAEAEAAAAATERDAAAARVRAALERAAQERAAVDLADPPEDPEEVA
SSLSDGPRPSIQAALALQEAAAVLNLHAQAVAVQNIRHLVHVVLDVTSGSFARWREQFLLALGKYSLQDHVLQDDRPLNS
PDWERMDCVVRSWLYGTLSDNLHDIVRHRGDQGDTARTTWLAIESQFLGNREARALILDAKLRTLVQGDLSVTDYCKLLK
TTADNLADLGEPVSDRSLVLNLIRGLNERFVSVGRHLRRSRPFPSFLEACDELTLEELTMGGPTPSPPTALVVSTGSGSS
SPRPAPQQTSGHPTTDPGGGKGGAGFGGKNNRRGARGRGGNAGHKGGKGGGAGTSAAPNHGPSGSWPTHYNPWLIVPGPR
NLPRGAPTHPPHQQALLAQQGAFLASQQHPPTPFQQQYLQQAPPAAFYGQQGAHVPSFGSSAPPGFYTPPPGLPAAFDQQ
SLASTFSTMTLQQPPNNDWYFDSGATSHMTSDSRTLSHTNLSQHPSPSSIIVGDGSLLPVTATGTTNLTDSLSLNNVLFS
PRLIKNLISVRQFTTDNNCAVEFDPAGCSVKDLESQKVIIRCNSSGPLYPLHLPGTTALAAASSPTIWHRRLGPPGRDTL
SKVTSVIPGCTKELDSICHACQLGRHTRLPFQTSSSRASTVFELIHCDLWTSPVISVSGFKYYLIILDDYSHYVWAFPLR
LKSDTFTTLTNFFAYVHTQYGTTVKAIQCDNGREFDNSISRSFFLTKGIHLRMSCPYTSSQNGRAERMIRTINNAVRSLL
FQASMPPSYWVEALHVATHVLNILPTKTLHSSTPHSVLFGVQPQYDHLRVFGCACYPNLSATATHKLAPRSSLCIFLGYS
SNHKGYRCLDLQTNRVLISRHVIFDETSFPLSQQHTPSNPADFDFLTSDVDPLPSVPLPFPTGTSIGVPARPRAAPPAST
LSAPCTDCPRVAVSEGAAVQTTATTPVPGKAPSLISGARQATPSTHAAAAAPGAAAARQAASSTPAAAAAAPVKPRPLLV
YSRRQAAAPPPQPAAPSPPALPKGAVSMQPTINNHSMTTRAKAGHRFPSVYNSTTLSPVPRSFRSALADPNWRTAMEEEF
SALLQNKTWELVPRPSQGNIVTGKWIFKHKFRADGSLERKARWVLRGFTQRPGIDFDETFSPVVKPATVRTVLSLALSRG
WPVHQLDVKNAFLHRTLSETVFAAQPAGFEDSTHPGYVCQLNKSLYGLKQAPRAWYSRFATFILSLGFVNAKADTSLFIY
HNGADTAYLLLYVDDIILTASSTAVLRRIIAALQREFSMKDLGKLHHFLGMQVQHRDGCLFLSQQQYMLEILDRAGMAEC
KPCSTPVDTNPKLSAVSGDPVQDPSDFRSLAGALQYLTFTRPDIAYAVQQVCLHMHDPREPHLAALKRILRYVRGTLHLG
LVLRPSSQHELIAYSDADWAGCPDTRKSTSGYAVFLGDNLISWSSKRQNTVSRSSAEAEYRAVANAVAETSWLRQLLSEL
QSPLQRATLVYCDNISAVYMSANPVQHQRTKHIEIDLHFVREQVALGAVRVLHVPTTSQYADIFTKGLPSSLFVEFRTSL
NVRCTDAQTAG
>Copia-47_BRa#LTR/Copia 64-4284  [Brassica rapa]
MSETHNSPATNSETITVSATPTLLNVNMTNVTKLTGSNFLMWSRQVLALLDGYDLAGYIEGSIVVPPPTTTTDDEITTNP
SYTLWKRQDRLIFSALLGAVTPTIQPILSTATTAAEIWTTLTTTYAKPSRAHVKQIRQQIQTWKKGEKSINDYFQGLTTR
FDEIALLGKAMDHEDQIEAILVGLPEEYKTIADQIDGRETPPSLPEIHEKLLNQEAKLQAASSVTTPAPITANYTNSRGS
SSYNRNQNSRRGGYRGHQTWQQQQLTASSPQLNTNSSRGYQGKCQICSVFGHSARRCPQLHGGSTAHVTNPPSWQPRANV
AQANLYNPNAWLLDSGATHHLTSDLQNLALHQPYTGGDEVAIADGTGLKITHFGSASIPTRSKTLNLNDILCVPSVHKNL
ISVYRLCNANQVSVEFFPASFQVKDLSTGVQLLQGRTRDDLYEWPVSLSKPAASFASYPDTKTTLSQWHQRLGHPSSSTL
KAVVSRFSLPCLTNSSTFSPCNDCLLNKTQKLPFHQSTIVSTHPLEYLFTDVWQSPILSTQNYRYYLVLVDHFTRYTWLF
PLTKKSDVKDIFQTFTPIAETKFKTKICNLYSDNGGEFIALRPFLASHGISHLTTPPHTPEHNGLSERKHRHIVETGLSL
LSSAKMPLTYWPLAFATAVFLINRLPTPVLSHNSPFQKLFQQTPNYQKLRTFGCLCFPWLRPYAPNKIEDRSIPCIFVGY
SLSQSAYQCLEPVSGRMYVSRHVRFNETQYPFATMTKPTPASHPEPPTSSYSDPVTVIPITSPLVQSPASAANTGPLSGD
SSPLLQPQSSATSTEPATSHQSTTQASTSQGPNPSVPLAEPSVPVAEPSVPVAEPSVPSAPVGNRHSMTTRAKDKIFKPV
IRYNLTAALQSDPHWIPSTWQQAMKHKHWRDAMSKEFNSTNENLTWDLVEVTEKMNVVGCRWVFTIKYNSDGTIDRYKAR
IVAKGYHQQQGIDFEDTFSPVIKSTTIRIVLGLAVNNDWPVRQIDVNTAFLQGHLNEEVFMSQPPGFSDSDRPTHVCRLK
KALYGLKQAPRAWYSELKSFLLQYGFHNSLADTSLFILKQQTTFVYVLVYVDDILVTGRNPAAVQRVITSLATRFSIKDM
GNLGYFLGIETLRTSHGLHLKQRKYITDLLTKANMLHAKLVATPLDSHPKLTLNSGSPLPDPHEYRRIVGSLQYLALTRP
DVSYAVNKLSQFMHCPTSDHWQAAKRVLRYLSGTLDHGIFLRKQTAPPALHAFSDADWAGDVDDYVSTNAYIIFLGSQPI
SWTTKKQSSVARSSTEAEYRAVANTASELRWIASLLHELGIPVTTVPTVYCDNIGATYLCANPVFHSRMKHIAFDYHFVR
GQIQNRQLRVTHVSTKDQLADGLTKPLSTTPFQTSRIKIGVTTAPPS
>Copia-48_BRa#LTR/Copia 39-4156 via tfasty with ATCopia52, 86.9% SW:4981, 1 frameshift. [Brassica rapa]
MADPVYPFPGNVHILSCVTLKLTDSNYLLWKTQMESLLSSQKLIGFVNGSVTSPEPTQQIENGGVVTTVANPVYESWFCS
DQLVRSWLFGTLSEEVLGSVHSLSTSREVWMSLAEHFNKSSLAREFSLRRSLQLLSKKEKTLNEYSREFKGICDKLSSIG
KPVDDSMKIFGFLNGLSREYDPITTVIQSSLSKFPQPTFNDVISEVQAYDSKLKSYDEASAAVNPHTAFQTQQSSYNTNP
PQYNPNFRGRGRFNQGRGRGGYSSRGRGFFQHQPQQQGGNNSRPVCQICGRVGHTAIKCYNRFDNAYQAAESQHAYASLQ
VADQSGKEWHPDSGATTHVTSSTNNLHTAETYNGTDAVMVADGTYLPISHIGSVTLSNTAGNISLNDVLVCPEIQKSLLS
VSKLCDDYPCGVYFDASKVCVIDLKTQRVVSKGPRRNGLYVLKSQEVVAMYSNRQCGADAEVWHQRLGHSNNKILQHLKI
NKEITVNKSSINPICEPCQIGKSSRLQFFSSDSRVLHPLDRIHCDFWGPAPVVSNQGFKYYVIFVDDFSRYTWFYPLQAK
SDFFAVFKVFQRLVENEFSTKIKVFQSDGGGEFMNNALKQHFAETGIKHLVSCPYTPQQNGTAERKHRHLVELGLTMLFH
SHVPLKHWVEAFFSSVYIGNRLPSSVLQDKSPYEVLKKKKPEYSSLRVFGSARYPCLRPQTENKFDPRSLQCVFLGYNSQ
YKGYRCLHPPSGKVYISRHVIFDEASFPFKHQYKHLIPHYKTPLMQAWQSFPLSDQSSGERITRFFTPALPHTPQGAQQA
EPEIEVQQQPPPQQQPPPPAAPNVNPPVDNTHTMTTRAKAGIHKPNSRYVLLASKFSTKEPTTIAEAMAHPGWRNAVMEE
IERIHMLHTWTLVPRTKKMNVIGSQWMCKTKLKPIGDVDKLKVRLVGKGNHQEEGLDYLETFSPVVRTATIRIVLNVAVQ
KGWNLKQLDVSNAFLHGELKEPVYMTQPLGFVDAERPDYVCKLTKALYGLKQAPRAWFDTFSAFLIEFGFICNKSDPSLF
IYKSQGKTMVLLLYVDDILLTAEDESLMETLLQKLNKRFMMKDLGFPSYFLGIEIEKTSDGLFLHQSAYADDVLHQASMS
TCNPMPTPLPTHPDTLEDEAFPEPTYFRSIAGKLQYLTISRPDIQFALNFVCQRMHAPTIGDFGLLKRILRYVKGTVKMG
MLIRKESDLVLTAYCDSDWSGCRETRKSTTGLCTLLGPNLISWSARRQDTVSGSSTEAEYRALTTTAKEIAWLSFLLKDL
GVHQMNPTLLQCDNLSAVYLSANPALHKRSKHFENDWHFIREQVALGRIETRHIPAELQLADIFTKSLPRRSFESLRSKL
DVTFLPTPGLRGD
>Copia-52_SB#LTR/Copia 28-3905 via tfasty with Copia2_OS, 1 frameshift. [Sorghum bicolor]
MTKGYTDAMKPEKFTGVNFKRWQTRAQLWLTAMGVFWVVGNSPALPLGSKKEVEEFTAATTIFVGCVLSVLSDQLCDVYM
NIKSAAELWEALEHKFGAADAGHELYVMEKYHDFKMVENRSVVEQAHEFQLIVRELEQLGHVLPDKFVAGGIIAKLPPSW
RNFATALKHKRQKISVEDLLAGLDVEEKARAKDAATKSPEQSSANVMQHAGKNKQKATQTTQFKKKKMNMDEVVCFVCGE
NGHFAKKCKNRKGRKNQQGQKSANVTIGDPSGSGYGNYLPSAFSVFQSNDWWIDTGANIHVCTDISMFSSYQIARGSTVM
MGNGSHASVLGVGSVDLKFTSGKIVRLKNVQHAPSIKKNLVSGSLLCRDGFKLVFESNKVVVSRYGQFIGKGYESGGLFR
FSLSDFYNKVVNHVCDSNNSVADIWHSRLCHINFGCMTRLSSMSLIPNFSIVKGSKCQACVQAKQPRKPHKAVDERCTTL
LELIHSDICEMNGVLTKGGKRYFMTLIDDATKYCYVFLLKTKDEAFECFKTYKAEVENQLEKKIKRVRSDRGGEYFSNEF
DLFCTENGIIHERTPPYSPQSNGVAERKNRTLMDLVNAMLGTSGMAKAWWGEAVLTACHVLNRVPTKNSEVTPYEEWKGR
KPSLHYLRTWGCLAMVSVPINKKHKLGPKTVDCIFLGYAHHSTAYKFLVIKSEAPDVLVDTLLESRDVTFFENIFPMNVA
YSLPSSSNEFIPEPTPAIEPFIDPLGIEEDSNVVPPRRSKRQRVEKSFGDDFIVYLIDDTPTTIAEAYASPDADYWKDAV
RSEMDSITANGTWEVVDKPAGCRPIGCKWVFKKKLRPDGTIEKYKARLVAKGFTQKEDEDFFDTYSLVARLTTIRVLLSL
ATSHKLLVHQMDVKTAFLNGELEEEIYMNQPDGFIAQGQEGKVCRLLKSLYGLKQAPKQWHEKFEKTLTSAGFAINEADT
CVYYRYGGGKGVILCLYVDDILIFGTSLDEINDVKSFLSQNFDMKDLGEADVILNIKLNKGENGITLLQSHYVEKVLNHF
GYMDCKPSPTPYDPSLILRKNKRLGKDHLRYSQIIGSLMYLASATRPDISFAVSKLSRFSSNPGSDHWRGIDRVMRYLKG
TMSYAIHYSGYPGVLEGYSDSNWISEADELKATSGYIFTLGGGVVSWRSCKQTILTKSTMEAELTALDTASTEAEWLRDM
LMDLPLVEKPIPAILINCDNQAVITKVKNSQDNGKKSSKHIKRRLKSVRKLRSSGVIAMDYIQTAKNLADPFTKGLSRTV
IDNASKEMGLRPM
>Copia-48_ZM#LTR/Copia 74-4780  [Zea mays]
MADLQPTSPAITDLDGDASADSERAALAAREAALARAAAAEQDAALAQRERDAADARIRAALARAAHERAAAALSPPITD
LTSDGTGADSVAQLSAALLQHEAAALLNLHAQAVAVQNIRALVPLLLDVNSTFYSRWRESFLLTLTKFSLDCHVLSDAVH
HSPDWTRMNAVVLSWINGSITDNLADMISERGASARVLWLAIESQFLGNRTTRTLYADQAFRSFTQGDLSAADYCRRYKK
LAEDLRDLGEPVSDKTLVLNIIRGLNERFQALGLHLRRTSPLPTFLQVRDDLTLEELTMTNAAPAAALAAVTTPPGENSS
SKSSTPTAPAGRSSHQRPPSHHSGGGSGHGSSSGQRGKRGKRGGRTSSNSSSGIIGPAPSSNYNYYNPWTGAIYMWPGQR
PPSTPRPPAASPPPPHAFVAGTPGQWAVPAAAYGPPPAYADPSTPAPVWDQHTLAANFQTVTLQQPPQQEWHFDTGASSH
MTSDAGIISHPPSSQHLPTHIVVGNGHLIPVTSTGTTRLPYNLSLHNVLVSPSLIKDLISVRQFTTDNNCSVEFDPFGCS
VKDLPTRREIFRCNSSGPLYPLRFPASALLASTLWHQRLGHPGHAVLSHLAQSSAISCNKNTSTHPCHACQLGRHVRLPF
PISSSRATCNFQLIHCDLWTSPITSVSGHKYYLVILDDCSHYLWTFPLRLKSDTLSTLTNFFAYVRTQFGVPIQSIQCDN
GREFDNLQARNFFSSHGVHLRMSCPYTSAQNGKAERVIRSINNIIRTLLVQSSVPPNFWAAALGTATYLLNILPTKTLAL
STPHFALFGHNPSYDHLRVFGCKCYPNLSATTPHKLSPRSTLCVFLGYSPHHKGYLCFDRHSNRTIISRHVVFDETSFPF
SEGSHPPPPAAFDFLDNYTNPVAAPFGLSPVSSFSGTRMPPPPPPVAPSPAVPLVSSEVAFQPPAAPAGPAPMSQSPARM
AGLPGASAPTILPPGSTTVPDVHRTTAPADRFCGRVYSRRPPTATAPAPSPTTATAPPIPAGAVPVDPVINHHRMTTRGK
SGLRFPALFEAAALSPIPRTYRAALTDSNWRSAMEQEYSALIGNHTWDLLPRPPTCNVVTGKWVFKHKFKADGSLERYKA
RWVLRGFTQRPGIDFSETFSPVVKPATVRTVLSLALSHRWPIHQLDVNNAFLQGTLSETVYCVQPTGFEDSTHPDYVCRL
NRSLYGLKQAPRAWYSRFASHLIQIGFVEAKSDTSLFVYHKGTDMIYLLLYVDDIVLTASSMNLLRRTITALQQEFSLKD
LGPLHHFLGMHVQQSASGITLSQRQYMIEILERAGMSNCKPCTTPVDINPKLSADGDPVSDPTEFRSLAGALQYLTFTRP
DIAYAVQQVCLHMHDPREPHLAALKRILRYIQGTLQMGLHLSSSPQMELVVYSDADWAGCPDTRRSTSGYAVFLGANLVS
WSSKRQNTVSRSSAEAEYRAVANAVAEVSWLRQLLTELHVPLPKSSLVYCDNISAVYMSSNPVQHQRTKHVEIDLHFVRD
KVALGVVRVLHVPTTSQYADIFTKGLPSAVFTEFRTSLTVRSTDANTAG
>Copia-90_BRa#LTR/Copia 62-4159  [Brassica rapa]
MTSGKIEVEKFDGDGDYVLWKEKLLAHLDLLGLMEGLEEEDETSTVSEDPDLASGGGSVTPVTKVSDSTEKTLKEKRGKA
RSTIILSVENHILRKIVKEKTAAGMLRMLDNMFMAKSLPNRIYLKQRLYAYKMSESMSIEENVNDFFKLISDLENVKVTV
PEEDQAIVLLMSLPRQFDQLKETLKYCKTTLALEEITGAIRSKTLELGVNGKAIKSNSEALYVQDRGRSEGRTKASDKGK
HKSRSKSRGAVKACWVCGKEGHFKKQCFVWKERNKGLNLTEKGEASVAKGDEYQVASLMVSEANFLTSDESNEKWILDTG
CTFHMTPRKDWFESLSSSDGGSVKMANDTVSVVKGIGSIRIQNDDGTTILLTNVRYVPTMSKNLISLGTLEESGCWFQSK
EGVLKVIKGCRMMMKAVKTDRLYLLKGKVITGEANAIDKSSDETKLWHSRLGHIGQKGLEVLAKKGCLQQCKVNGLEFCE
DCVYGKAHRVSFGAAKHTTRDKLEYIHSDLWGSPSVPNTLGNCQYFISFTDDFTRKVWLFLMKKKDEAFTKFVEWKKMVE
LQTGKKVKRLRTDNGLEFCNHEFDGFCRREGIVRHRTCTYTPQQNGIAERLNRTIMNKVRSMLSESGLGQEFWGEAASTA
VFLINRSPSTALDFGIPEEKWTNSLPDYSGLKRFGCVSYVHSDQGKLNPRAKKGVFLGYPTGVKGFRIWLLDEEKCIISR
NVVFQEEKVYKDVKEVSGSTDEEQNKTRSVNLEVGEPEAETRHDQGGESSRKSSTQTEEGSESDSSEQDDTDTDEEYFSG
DNEDDISQYQLVRDRAKREIRLPRRYAESNAVGLALAMTEDGGRPEPKSYEEAVNDPDWESWKEAMDDEMVSQRKNKTFE
LVNKPENKKIIGCRWVYKRKYGLLGVKRPIFKARLVAKGYSQKHGVDYQEIFSPVVKHVSIRLLLAAVAQFDMELEQLDV
KTAFLHGNLDEYILMSQPEGYEVESKPEKVCLLKRSLYGLKQSPRLWNQRFDLFMVKSGFKRSEQDTCVYFKEISKNQYV
YLLLYVDDMLIASKDMNQIKKLKDLLSSEFEMKDMGEAKRILGMEIHRDRSKGVLTLSQGNYLMKVLDTFKLDQCNSVQT
PLGVHFKLRAATEKDLKEQEEEMKSVPYASAVGSIMYAMIGTRVDLAYPVGVISRYMSKPLKEHWQAVKWVLRYIKGSTG
LKLVFKRQERFVLSGYCDSDFSGELDHMRSTGGYVFTLGGGTISWRSSLQRVVALSTTEAEYMALAEAGKEAVWIKRLMN
EMGFHQGAVEVFCDSQSAIALSKNAVFHERTKHVARKFHFIRDLITDGLVKVTKIPTLYNPADILTKVLPVGKLQDALEL
LQLSKN
>TCA5#LTR/Copia 98-4149 [Candida albicans]
MISPDFLDFINKDTMDLQQYPTVYQTFLDRLICATIDPHIKQSLKYRKLSGKKMLSEIISQFGSMTIKDKVNYSIIMATK
IHSDVTTHLDKMNLLAQFYAFLMRQPQDLKPALLLIAGINDSRFNETYFHDNKELTISKLERYIINQNSKITPSVPTPSP
RDAVTGLLVTQPTSALGQSEVFNTQCFNCFGLGHTARRCASPKRLGQINNLRSKLLAFETRSKSRKRFPPQPPPTNRSAN
STIITNPSPTDDTISSTTEDSFPRDVFGWAASSDQIKSKDNLSLFFDTGASAHLINNLNLLHDYKPSKENKHVITANGDK
IPILGTGTVKLQHGQHKISLRNCQYSPHLHINLISPRLLLDDSTSMTITQSGIYHSKIGQIGYYSTEDGNLIKCMFRPIT
IPHLSLYSQYVEMGLQSNNVLRNIPAFTVHIPQLHDSLGHTSTQQVSNVMKRFNVTTDNIGTDCETCRLGKAITQIPKIS
THTISSHCLELLHVDVHGPISVPSIFQERYFLVILDDYSKYLTVQPLCNKSDATAEIIEFINHWEKFFLGNGNYHTKILR
SDNGGEFLNKTLTTYLDSKYITHQTSNAYEHHENGAAERAIRSVKDMARVILLQSKLPVPFWSLATRCAAFVMNRLPHKT
INGKIPYEVWTKQLVNLKMMKPFGSQVYVKIPIGVKSFSAQALSGIMVGYATNKKGYLVYDPTQNRIFTSSQIICHPSIY
PAANLTFNEPLIISSKVTAAHLHPLTISNLVIPPTNAVSETPLANCVLSSNSSVCPKVCQLQTVLEHGEDKIYALIIPIS
IGNMKRTRTNENKICQLDESNNTTIPDSVILSANNVLLNLESRSSIPKSYKEAITSNEKSKWADAMDSEFNSLQSNNTWS
LEPLPEGRKAIGVKWVYTIKDTGRYKARLVALGYRQQAGVDFLETYAPVIRGESIKLIFALASKSKLKIHSIDVTTAFLN
GEILELIFVKQPPGYEDKKRPNHVCKLNRSLYGLKQLPLMWNIKLNDVLIKEGFRRLGGDLGIYISKDKRTIMGVYVDDI
LICGPSDSEIEQVKNNVRKYFSITDNGLCRKFLGINVYQQANEIRLSLNDYIRRMIEELKLSVSETNPVSIPSDVNYEIF
KVNENDDEKPCDQTKYRSLIGKLLFASNTIRFDIAYSVNSLSRFINDPKEKHWIAAVKVVKYLSGTQRYGICYNGNGDLN
IYADSDWASTPSDRKSITGYIVTYAGAPISWRSKKQNVIALSTTEAEFMALTESIKEALWLIYIFRDINVILKLPIVIYE
DNLLCQKLLENPRFHNRTKHIDLKYKFTKDHIEAGTIKVESTNSADNLADMLTKPLPKIKFKHLRWLAGLRPLD
>SHACOP18_MT#LTR/Copia 40-3921 (1 stopcodon)  [Medicago truncatula]
METETSFSQVAPPVFDGENYNLWAVRMESYLEALDVWEAVEEDYEVPPLQNNPTMAQLKYHKERKTRKAKAKSFLFSCVS
QNVFTRVMTLKTAKEIWDYLKEEYAGDERIRGMQVLNLMREFEMQKMKESETIKDYSDRLLSIANKVRLLGTQFADSRIV
EKILVTVPERYEASITTLENTKDLSKITLAAVLHAMQAQEQRRLMRQDHVVESALPAKHHVVGSTAGNQSKDRGKKKNYP
PCEHCGKMGHPPFRCWRRPDAKCSKCNQLGHEAVICKGKFQQLEVKAQVVEQDEEDQMFVATCFSSKSSSECWLIDSGCT
NHMTYDKTIFKDLKPTHISKVRIGNGVYIPAKGKGTIVISTSSGIKTISDVLYVPDIDQNLLSVGQLLEKGFKVSFENQL
CLIFDITGREILRVKMRGKSFSFDPIEEEQTAYFTQVSPIELWHKRLGHCHIQRMLNLKKKDMSRGLPVLSDDLPNCNAC
QFGKQNRIPFPKTVWRATKKLQLIHTDVAGPQRTPSLQGSLYFILFIDDFTRMCxIYFLKFKHEVAGVFLKFKKMVETQS
GSKIQFLRSDNGKEYTSAQFNLFCEEAGIEHQPTAPYTPEQNGVSERRNRSVMEMARCILHEKELPKQFWAEAANTAVFL
QNRLPTKALQDKTPFEAWYEYKPSLTFLKVFGCVCFAHVPKVKRDKLDKKALPGIFVGYSSVSKAYKVYHPQTETLTITR
DVHFNEDQQWDWKNPPKTSGSLSIIEYTHPEKQTTELCLNELEDDPSIRGTRLLSDIFQRCNVAICEPSCCEEARKDPKW
KNAMEEEMSMIQKNKTWELVEKPQDRKVIGVKWVFRTKLNVDGSINKYKARLVVKGYAQIFGVDYSDTFAPVSRLDTIRL
VLAVAAQRGWKVFQLDVKSAFLNGVLQEEIYVEQPEGFVMQGEEDKVYLLKKALYGLKQAPRAWYSRINDHLMSIGFVKS
LSESTLYVKHTGNNILIVSLYVYDLLVTGDDTRLVEKFKQEMMQAFEMTDLGLMTYFLGIEIKQSDNEVFICQKKYAKEI
LRKFQMEECKAISTPMNQKEKLSKEDGADKVDEGYYRSMIGCLMYLTATRPDILFVVSLLSRFMHCASETHLVAARRILR
YVKGTVDYGVKYENCQNFKLCGFSDSDWAGSIDDMKSTSGYCFSIGSGVFSWCTKKQETVAQSTAEAEFIAATAAVNQVL
WLKKILCDLHLQQNHKIEVFIDNQAAIAISKDPVCHGKTKHFNIKLYFLREMQQNGEVTLVYCKSKDQLADMFTKPLPVN
KFEFLRQKVGVCRS
>TKL1_gag#LTR/Copia 1-633 (perhaps a fragment) [Kluyveromyces lactis]
RKCLKDEEEEYIANIHMTCVPNTSYPEWFKKWLENNMEFIDCFLEAVAIISEENDKPTLLREISTLSLRDRESIEKFAQR
ATRPYQRAERAKIPELDELLIQQVLQALPSECSATELIFSTKEDKSFDSLMKLLLSKQWGKKDAKRPEQNNNKHQGKQWN
NNSNERKQYNNRYNNNNQYASNNENSKETVQHVSSKQASEDLRLDTTDSEY
>TONT1_LE#LTR/Copia 127-4052 via tfasty with ATCopia95_359-4498, 1 frameshift and 3 stopcodons. [Solanum lycopersicum]
MENTGVTVAVAAPTQPLVSQAEKPGKFTGVNFKGWQQRVFFWLTTLGLQKFTSEDTPVPTDDMPDREKFMIVEAWKQSDF
LCKGYILSALEDDLYNVYSAITTSKELWNALEKKYKTEDACLKKFVIAKFLDYKMTDSKTVGSQVQELQLILHDLIAEDM
VVNEAFQVAAMIEKLPPSWNDFKNYLKHKRKEMKLEDLVIQLKIEEDNRNAEKKSHKSSTIIGVNIVEEAPTKDKNRKKS
NGQKSExAKKKFKGNYYNCGKAGHRSSDCHAPRKDKNKGKGKNQANIVEKMEDADDLCAMISECNLVGNLKEWFLDSGAT
RHICSAKEAFATYTPTEYDEDLFMGNTVTARIAGTGKVMLKMTSGKVLTLNNVLHVPTIRKNLVSAALLVKNGFKCVLVS
DKAVISKNEMFIGKGYLNEGLFKLNVIVIDSINKNSASVYLLELSDLWHARLGHVNYKALRKLVNLEVLSDFKCDKSKCE
ICVESKFVKHPYKSVERNSKTLDLIHTDICDMKSTSSRGGKKYFITFIDDCTRFCYVYLLNSKDEAIDAFKQYKNEVENQ
LNLKIKMIRSDRGGEYESPFAEICLEYGIIHQTTAPYTPQSNGLTEQKNRTLKEMMNALMINSGSPRNLWGEAILTANKI
LNRVPHRKTRSIPYELWKGRKPNLKYFKVWGCLAKVEVPLPKRVKIGPKTIDCVFIGYAMNSKACRFLVHKSDNPEIHVN
TIIESDNAKFFENIYPYKTESESTSERSKRPREESMKNILTSEEPRRSTRRRKYVSFGPDFVALLLENEPQTFKPVMSSS
ESTYWKEAVNSEIESILSNHTxELTDLPPGNKPLGSKWIFKRKMKPDGTIDKYKARLVVKGYRQKEGLDYFDTYSPVTRI
ISIRMLIALATVHDLKIHQMDVKTTFLNGELEEEIYMEQPEGFIVPGKEKKVCRLVKSIYGLKQAPKQWHAKFDQVMLAN
GFKINECDKCVYIKNVMNHEVIVCLYVDDMLIMSKEIDDINATKRMLSNKFDMKDLGVADLILGVRIIKTPxGLALSQSH
YIEKVLDKFNYLNFNVVKTPIDLSCTFKKNEGQSDSQLEYARVLGSLMYIMNCTRPDIACAISKLSRYTSNPNQTHWMVM
KRVLGYLEWTQHYALHYNKYSAVIEGYSDANWITGSNDVKSTSGYVFILGGGAVSWKSSKQTCIARSTMESEFIALDKAG
EEAEWLRNFIEDIPFWPKPVGPICIHCDSQAAIGRAGSVMYNGKSRHIRRRHNTIRQLLSSGIITIDYVKSSDNVSDPLT
KGLVREAVERSSKGMGLRLRTSQHDGNSI
>TKM1_pol#LTR/Copia 1173-5204 [Kluyveromyces marxianus]
RGILGLTQRSRKNNSPVDPQRDFMLDGGATVSVIYDKKLIHNFTSESNQILVDVQQNEVAVKGEGNLELKFKGKRISLPA
IYAPSTHTNIISVEDLTKSQAYLDLRRNCLLSKNGKTIAPTHKFAGLRWLSRKNAIELPNQTQSVYAITPRSVRSAPDKF
SLTSIHNMFGHMNINYIRESFRKGLIQGVKEDDVDWTGVSSFQCQHCMEGKAKRNNHYVNARKDYTKEYLPFEYLHTDVF
GPVRVQRTRTTPRYFIAFIDEVTKYIWTFPLLHKTAEEVAPTFKEVVMLIYTQFNTRVKTIQMDKGSEYLNTKVQKFLRE
RGIVSRETTVADSKANGAIERQHYTLLNDCRTFLRQANLRPRLWYHAVVYSTVMRNSLLNRSIGTSPRNRAGMSGLSFRD
ILPFGQPVIVHLPNPKSKLQARGVLGYALHPSTRSYGYIIVVGKKKKIPIDTRNYRVLNYPPGATISEDEVQYMIDRMEN
NDAESQDDIESNFEPNYTDMEQPIHHTADYFPNTTASNIETDQYNNDSFGLHYGGDSVPPESSSSEDELFPTDESENDSD
SSDQSFNDDGDPMSPPYSGGEEQIVPTPAPIRRVPPMEPPSPVEDSPPPLSGTDLDDLFGESNINNYIPEDTDLLALNHE
SVPEPDTVVPETTNIEQDNILPLVTNENSNPPNDSSDQSGDESGEESGEESVDNRLKSIPIFNGNKHKDARTAEADLDSL
YGGGDNTENNNGPTLEEVFRSIEEDPFMLTQKRPRSRARYRESNQDSCDSGGDYESGSDSDGSSDESPQKGRKIQRVNYV
NAVLKPVNVIPLNMSLNYSQAISRNRNEEEKDAFQKAYQKEIAQLTKMNTWNEELIDASTLPKKKILNSMFIFTTKRDNS
KKCRLVARGDQQAADTYDTELKANTVDNLALMTVLALTLDYNLTAFQLDISSAYLYADLKEELYIRAPPHMNAKNKVLRL
NKSLYGLKQSGANWYELIRSFLIKKCDLIEDRMWKCVFRDKEPLKLIICLFVDDMLVVGNDVKYIKKFISKLSKRFDTKI
VNDGSHRPEDGVNEYDILGIELEYKKKEYMKFGMQKSLEDKLPQLGIPLLPNAKIRKVPGVPGDYIFSGKELTLNEREYK
SKVKHLQRIVGLASYVGHKFRFDILYYVNILAQHQLYPSAKVLDRAAQLCQYLWDTRDKKLVWHYSGPKENNVTAVSDAA
FAGNQDFKSQSGTLYLRNNKPIAAKSRKIKLTCISSTEAEIYAISESLPILRGLEHLVNKLQDIKATVKVKTDSQPSMAI
INGTDDSACLKKHIGSRAMRIRDECDDLGLTLEYIPTKENNADVLTKPLSVKLFKLLTEDWIQ
>SHACOP7_MT#LTR/Copia 143-4549  [Medicago truncatula]
MAIQSFDSYADFATNASNPFFLHPSENPAVELVTPPLEGNKNFQSWIRSMRLALTSKNKIAFVDGTFLTPAKSDALYNQW
IRCNSLVLAWIQRSVSVNVRKSIAFFDKAYDAWKDLHARFDQGDMFRIADIHEEICRMSQGSLDVSSYYTELKSLWDELE
NFRPLPSCKCAIQCSCGAVQSLQTFRDQDYTIRFLKGLNDEYSHVRSQIMLMDPFPPVTKAFALVTQQERQFHIPTISDV
DGDLKSITDNVASVNNVYSNRGRGGYNNRGRGRSNGGGRGQNQNRYCTNCKRSNHTIDTCYLLHGYPPGYQNRSNKGAQS
GSSVNLASTVGIEERSQITHTPATSNSGFSFTQDQYKSLLDLLQQNKQQASSAIHSANTTLTNSNTSSTNPFVLNVNSNS
DFGKHSNFWIIDTGATDHITNNCSILTNSHSIKPITVHLPNKTFTTAIMVGTVILSDDLHLKNVLFVPTFHANLISVPQL
TKTSKCSAIFTADCCYFLQETTKKTIGTARLVGGLYIIESISNSVCPIISHSVSNCSTNNISNSALWHMRLGHISFDRHQ
CIANKYPFVHFNKTRIPCDVCHFAKQKKLPHISSITKTTQIFDILHADIWGPYSHTSILGHKYFLTLVDDFSRFTWVILM
KSKGETRKHLTNFISFVETQFDTKLKCLRSDNGVEFLMHDFLLSKGILHQRSCVETPQQNGTVERKHQHILNVARALSFQ
SNLPKTFWNFAIQHAVHLINRIPTPLLSNKAPYEILHNKPPVFLHLKVFGCLCYASTLHTHRTKFDSRARKAAFIGYKEG
IKGYILYDLSSHQLFISRNVIFYEHCFPFHHSSNATTPTSPNPSSNDNSAFPFDSFGVENNLTAPTSPSIVSSPSSPLSP
PPTSPSLPLTQPIRHSTRITNRPSYLQDYHCNYTSCTNPSSGINTAITYPLSSVLSYNNCSSSYKNFCLSVTTNLEPKTF
IQASKHECWQNAMKAELDALSLNKTWTIVDLPAGKTPIGCRWVYRIKYHADGTIERYKARLVAKGFTQMEGVDYFETFSP
VAKLTTVRVLLALAAAKGWFLEQLDINNAFLHGDLNEEVYMSLPPGFEISNSDCSTKVCRLHKSLYGLKQASRQWNHKLT
TTLISLGYSQSQADHSLFVKASDSTFTALLVYVDDIVLTGSSMTEINFVKKILDNRFKIKDLGPLRFFLGLEVARTKDGI
SLNQRKYALELLHDSGNLATKPATTPCDPSTKLTNEGSTPYSDHSAYRRLVGRLLYLTHTRPDIAFSVQQLSQYVSQPLE
SHFRAANRVLRYLKSAPSQGLFFPASTSLQLSGFADSDWACCLDTRKSITGYCVFLGSALISWKSKKQSTVSRSSCEAEY
RALASLSCEIQWLHYLLADLYIPIKSPSSVYCDNASAIYLAHNPTFHERTKHIEIDCHVIREKIQKGTIHLLPVPSSSQL
ADVFTKPLHVTSFQSFISKLGLCNLHSPT
>OSCopia2#LTR/Copia 91-5130  [Oryza sativa]
MSSASSTPPSPTSAALDTAADAVAKAVRAAFQVLPGMEIDPTTANTVVDSAATRASDAARNALSPVLSTLLSGTPATTGA
PATTGAPAGAGIAATSVAATHGVAPATTAPLPGTMPADLAALFASARLAHGVHTPEPTVPDFSRPPATPLDDAALAALHA
QAVSVLNIKALVPVTLDVAATNYTRWRGLFLVALGKYALTDHVLSDAYHFDRADWVQMDCVVLAWLFGTISFDLLQDVLA
TDTTARLVWRGLEYQFLGNSEQRALNLTTEFHTFQQGDLSVDEYCRKMKTFADSLGDVGEPVRDRTLVLNTLNGLSEKFN
NLRSLVPMQRPFPTFAELRSLLRLEELSKPNHAASASSAVFLATGSTTNGGKGANPAHGTGYGAGNQGGGGKGNSNRRRR
GGNGGGGGGGGGGGNSNQGGGSTVPAQAQGAQWRAGSQWPSPQNPWAGTIHMWPGPLGRGVLGPRPAPSPFAGAALAGPS
GGPLPGQVYPAPVPYQTAAGLGQQAQLGGVGQFGPSQPPTSVALQQPLGWFGGAPSQWDQASLAGSFNTTTLHQPATNDW
YMDTGATAHMTSDTGILSLSHPPNPNSPSHIVVGNGSTIPVTSIGHSKICHPNCSFTLRDILCSPAIIKNLISVRRFVID
NWCSVEFDPFGFSVKDLRTRTVIARFNSSGPLYSLHHALPPPPAATALLANSSTDLLWHRRLGHLGHDALNRLAAVVPMT
RGDLTGVCHACQLGRHVRLPFASSTSRASTNFELFHCDLWTSPVVSASGFKYYLVILDDCSHYVWTFPLRFKSDTFTTLS
HFFAYVKTQFATNIRSIQCDNGREFDNSAARTFFLTNGVHLRMSCPHTSPQNGKAERILRSLNNIVRSMLFQAKLPGSFW
VEALHTATHLINRHPTKTLDRHTPHFALYGTHPSYSHLRVFGCKCYPNLSATTPHKLAPRSTMCVFLGYPLYHKGYRCFD
PLSNRVIISRHVVFDEHSFPFTELTNGVSNATDLDFLEDFTAPAQAPIGATRRPAVAPTTQTASSPMVHGLERPPPCSPT
RPVSTPGGPSSPDSRLGPPSPTPALIGPASTSPGPPSAGPAPSASTCPASSTWETVARPPTPPGLPRLDGPHLPPAPHVP
RRLRSVRATGAPTPLSGLEISPVVNDHVMTTRAKSGHHKPVHRLNLHAAPLSLVPKTYRAALADPLWRAAMEEEYNALLA
NRTWDLVPRPAGVNVVTGKWIFKHKFHADGSLDRYKARWVLRGFTQRPGVDFDETFSPVVKPATVRTVLSLAVSRDWPVH
QLDVKNAFLHGTLQETVYCTQPPGFVDSAKPDMVCCLNKSLYGLKQAPRAWYSRFTTFLQSIGFVEAKSDTSLFILHRGN
DTVYLLLYVDDIVLTASSRTLLHWTISALQGEFSMKDLGALHHFLGVSVTRNSAGLVLSQRQYCIDILERAGMADCKPCN
TPVDTTAKLSSSDGPPVADPTDFRSLAGALQYLTFTRPDISYAVQQVCLHMHDPREPHLAALKRILHYIRGSVDLGLHIQ
RSSACDLAVYSDADWAGCPDTRRSTSGYAVFLGDNLVSWSSKRQHTVSRSSAEAEYRAVANAVAEVTWLRQLLQELHSPP
SRATLVYCDNVSAVYLSSNPVQHQRTKHVEIDLHFVRERVAVGAVRVLHVPTTSQYADIFTKGLPTPVFTEFRSSLNVC
>Lueckenbuesser#LTR/Copia 142-4190 via tfasty with OSSER, 7 frameshifts and 2 stopcodons.  [Volvox carteri]
MAEQSKRVPKLESIADYPQWEPRARNALILDGYWDVVNSAPITSVEKGLMAKAALIMMVGDKFLQEIDQCATSAAGWAYL
KKIHSENQKGHQLLYDAQIRSLKKGNDERVEDYVKRTIQLRTKLKDSGFDYPENITVKLMLDGLPPSFQHFVQQYTATGS
LDKLTFDGILPLLVYGGGTPSERDNPRTGRGAGRKNARHGQRQPSAVATRSQPTQQEGCWKCGAPDHIKRNCPQLYQNQG
GNPRPHFGGGGRHPNKFGLFAAALSATTEVCGIKGVPQWYIDSACGLHLTGCKEDLDDYVRVDDGPQIQALKGASLKAEG
YGSVKLLTNVDGSEYTLEVEQVWYVPGADFRLISASELDKKGYSMEIRDGQLNLYVTVKVPERMIRFLGVRPYGHRFLNP
LALNKPLVHRMRIATASLVAGGTYLLDATCPKYNRALAVMKDSVELWHRRFGHLGYRGLEQLASEGMVDGLPVTAKQFKE
AGxAQHSCEPCITSNTCVHRTHHQIASRFALERVHTDVVKMPHFSLGGARYAVRFLDEFSSFSVVRTVNSKDQVAQVVKD
ALLLLENQTGRRVREIVSDRGREYVNVKLRAFFAERGIRHNISAPYTPEQNGRAERLNRTLLEKVRAMLQESGLGNEFWA
EAFRTANAVRNCSPVSNKNATPHELLFGYKPDVSVLRVFGCTAWVYEERQHRTKLDPVSRKGIFVGYDSMDNYRIYLPED
GKVVVSCNVKFDESKGGSVVNVHAKDDGKSVSASSVSDTRKLLEDADQDEDAVGLADDAGDETAEDAGDESAEDAGEQVA
DADAPAGEISNPPVASTSGLRRSTRDRKAPERLIAAAAILSPNPTSFQEAIKSPQADMWWEAMEEEIASLHRLGTWRLEH
PPPDANVVPGRWVYKVKSGADGEVERYKARFVAKGYMQVEGVDYDEVFAPTSNHATVRALLSKAAAKGIEVHHLDVRTAF
LHGDLDEVVYVDQPEGFVTGERGLKCRLLKALYGLRQASRAWYVKLVNKLREMGYTVSDADPGLFIKCQGTDVVELLIHV
DDLLIGSDSKDLIAQSRRTGEGFDVRDxARSRTFLGWRLRDKPPGPLKISQKKYAAELVARFDMADAKSAAIPMEPSLVL
RREPVDEELLLDASKFRSLVGGLMYLAVCTRPDIAQAVYKLARFMSKPAVISHWEAAKSVLRYVKSTLAYGIVFCGSQSL
VGYADSDWPSDPDSRRSTGYVFILNGGAISWKSRLQPTVAASSVEAEYMAAASATREAVWLRKLMRDLGYEVRAVEIKDD
SQGAIALIRNPITSERSKHIDVIHHFVREKESSGSVSFQYCPSHDMVADVLTKPLALVKFSKFRECMGVR
>OSR3#LTR/Copia 484-4902 [Oryza sativa]
MAENQGIEQVMGKLVDMLAKKFSEASTTSNAIIPHTESILKIELMQNEIKLEGVKNYLSWSRRALLILKTKGLEGYVTGE
VKEPENTSSVEWKTWSTTNSLVVAWLLTSLIPAIATTVETISSASEMWKTLTKLYSGEGNVMLMVEAQEKISALRQGERS
VAEYVAELKSLWSDLDHYDPLGLEHSDCIAKMKKWVERRRVIEFLKGLNPEFEGRRDAMFHQTTLPTLDEAIAAMAQEEL
KKKVLPSAAPCSPSPTYAIVQGKETRECFNCGEMGHLMRDCHAPRKPTYGRGRGVDRGGTRGGRGYAGRSNRGRGYGYRG
DYKANAVTLEEGSSGTTPDNVANFAHSTSGSFNQAFMSMNTSHSSWILDSGASRHVTGMSGEFTSYKPYSFAHKETIQTA
DGTSCQVKGEGIVQCTPSITLSSVLYVHSFPVNLISISSLVDNMDCRVSLDRENCLIQERRTGKKLGIGIRRDGLWYLDR
RGTNEDVCALMASTSKEVTEVLLLHCRLGHISFEIMSKMFPVEFSKVDKHMLICDACEYGKHTRTSYVSRGLRSILPFML
IHSDVWTSPVVSMSGMKYFVTFIDCYSRMTWLYLMRHKDEVLKCFQNFYAYIKNHFNARVQFIRTDNGGEYMNSEFGHFL
SLEGILHQTSCPDTPPQNGVAERKNRHLLEIARSLMYTMNVPKFLWSEAVMTAAYLINRTPSRILGMKTPYEMIFGKNEF
VVPPRVFGCTCFVRDHRPSIGKLDPRAVKCIFIGYSSSQKGYKCWSPSERRTFVSMDVTFRESVPFYGEKTDISSLFVDL
DDLTRGDHDQQKEGEILGLKENEQSKGKIVVGEIPCAIGDPVQEQEWRKPHEEENLQVYTRRMRLPTTQQVEVDDQVSDD
LTHVQVSSESGGEQIEIREEESNLPIAIRKGMRSNAGKPPQRYGFEIGDESGDENDIANYVSYTSLSSTYRAFVASLNSA
IIPKDWKEAKQDPRWHQAMLDELEALEKNKTWDLVSYPNGKKVVNCKWVYAVKQNPDGKVERYKARLVAKGYSQTYGIDY
DETFAPVAKMSTVRTIISCAVNFDWPLHQLDVKNAFLHGDLQEEVYMEIPPGFATLQTKGKVLRLKKSLYGLKQSPRAWF
DRFRRAMCAMGYKQCNGDHTVFYHHSGDHITILAVYVDDMIITGNDCSEITRLKQNLSKEFEVKDLGQLKYFLGIEIARS
PRGIVLSQRKYALDLLSDTGMLGCRPASTPVDQNHKLCAESGNPVNKERYQRLVGRLIYLCHTRPDITYAVSMVSRYMHD
PRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLEVEGYCDAHWASCPDDRRSTSGYCVFVGGNLVSWRSKKQPVVSRSTAE
AEYRAMSVSLSELLWLRNLLSELMLPVDTPMKLWCDNKSAISIANNPVQHDRTKHVELDRFFIKEKLDEGVLELEFVMSG
GQVADCFTKGLGVKECNSSCDKMGMIDIYHPS
>SC-10#LTR/Copia 118-4177 Wised via estwise with ATCopia78 protein [Oryza sativa]
MVPVFAGENYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDAKALFLIQQGVAESLFPRIIGA
KKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLLMKESEKVKDYFSRVIEIVNQIRLYGEDINDQKVVEEILISLPEK
YEYIVAAIEESKDLSTLTIQQLMSSLESHEERKLQREGSSIENAFQSKLSFRPQNSRFRGNFQKNGFPMRDRGYFQKNGF
SRQKEDGQERREKGTSSSNLWCDICQKSSHTTDMCWKKMTCNKCXKKGPYSKYCRTREINRANFSQEKEKSEEMVFSCHT
AQEEKDDVWVIDSGCTNHMAADPNLFREMDSSYHAKIHMGNGSIAQSEGKGTVAVQTADGPKFIKDVLLVPDLKQNLLSI
GQLLEHGYAVYFEVFSCKILDRKXNRLVAKINMEKNRNFLLRMNHPTQMALRSEIDISDLWHKRMGHLNYRALKLLRTKG
MVQGLPFITLKSDPCEGCVFGKQIRASFPHSRAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKE
KSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSMLQ
DKGMPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCIFVGYAD
GIKGYRLYNLEKKKIIISRDVIFDESATWNWKSPKASSTPLLPTTTITLGQPHMHGTHEVEDHTPSPQPSSPMSSSSASS
DSSPSSEEQISTPESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIHMIEKNNTWEL
VDRPRDREVIGVKWVYKTKLNPDGSVXKYKAKLVAKGFKQKPGIDYYETYSPVARLETIRTIIALAAQKRWKIYQLDVKS
AFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQAPRVWYSQIDKYFIQKGFAKSISEPTLYINKTGTDILIVS
LYVDDLIYTGNSEKMMQDFKRDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPN
EKQKARDGADKVDPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLNFTAAKRVLRYIKGTADYGIWYKPVKESK
LIGYTDSDWAGCLDDMKSTSGYAFSLGSGMCSWSTKKQNIVALSSAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTI
YCDSKSAIAISENPVSHDRTKHIAIKYHYIREAVDRQEVKLEFCRTNEQLADIFTKALSKEKFVRDRELIGVCKK
>RLG_scAle_2_1#LTR/Copia 69-4370 [Saccharum hybrid cultivar]
MGTESDLTSATSGALGAASAPAICPFATINVKLHVPMVLELKPSNFTKWSTAFRAMCGKFGLLRHLDPASPARPTDDAWQ
QADFCVRGWLYSTASDSVLNLAMTDPQQTACALWRAIDDVFQANKAPRAIFLNHEFHSMIQGDSSIDDYCVRMKAKADEL
RDVGQTVLESTLVLNLLRGVNEVYSTVADNIAGQQPLTFSSARHQLLLKELRLQNDEKVRAASALFTAASFPAGGQQQQQ
QDNRRPNSKKGGQQPSASGGHNPTRRLPWGFNPWTGERVSPGERVTPPGQRRHGGFGGSGGPNAPSGRRQGLLGPPPQAH
TTFAPAATSGTSSSATWDAAGLIATLQAMNMQGTSPWVVDSGASTHMTSSDGMLTQHLPPSTSSITVGNGTTIPVTSRGH
SILPTPASNFILKNILVAPSIVRNLLSVRQFTRDNSCSFEFDAHGFSIKDLRTGQVTLRCNSDGDLYTMPASTPVALLAA
SSTLWHQRLGHPAPTVLAHLNKIHAVTCNTVDRSLCHSCQLGKHTRLPFSSSHSTTHAPFELVHCDVWTSPINSMSGFSY
YLVCLDDYSHFCWVFPLRKKSDVHQHLVELAALAQTQFSLPIKCIQADNGTEFLNTTTTQFLAARGTHLRLSCPYTSSQN
GKAERIIRTLNNSVRTMLLHASLPPTYWAEALLTACYLLNRRPSSSIQHDVPFTRLHKQPPTYSHMRVFGCLCYPNLQAT
SKHKLAPRSAACVFLGYPPSHKGYRCLDLSTRRIIISRHVIFDESTFPFTATPDTPSPTSLDFLLDDDMVLVPCPTVIAG
GTPPSTPVVASSISDVEPPPTDAAPTSPAVGSASPAPGGRPPVVPFPRVYIRRPRTVHAPAPSPAAPAPPVPPAPPVPST
APPAPPPPPPPRVTRTMTGVIPRVSYEGLTATSSSTSPLPTNYRSALADANWRAAMTDEYQALVNNNTWQLVPRPPGANI
VTGKWLFRHKFHADGSLARHKARWVVRGFSQREGIDYDETFSPVVKPATIRTVLSIAASRAWPIHQLDVKNAFLHGHLEE
TVYCQQPPGFVDPGAPDSVCLLQKSLYGLKQAPRAWHQRFSTFVRLLGFVASASDASLFVLQEGTHLAYLLLYVDDIVLT
ASSTALLQRITAQLSSEFAMTDLGTLHHFLGIAVTRSSDGLFLSQRQYAVDLLQRAGMAECHPTATPVDTQAKLSAHHGE
LLSEKDASEYRSLAGALQYYTLTRPDLAYAVQQVCLFMHAPREPHRALIKRILRYVKGTLSSGLHIGAGPVDKLTAYSDA
DWAGCPDSRRSTSGYCVYLGDTLVSWSSKRQTTVSRSSAEAEYRAVAHVVAECCWLRQLLQELHLQLPSATVVFCDNVSA
IYMTVNPVHHKRTKHIEIDIHFVREKVALGEIRVLHVPSSHQFADIMTKGLPTALFLDFRSSLCVREPPAATAG
>TST1#LTR/Copia 105-4482 via tfasty with Copia23-PTR, 3 frameshifts and 1 stopcodon. [Solanum tuberosum]
MTQGGNASHMPFQLTSHRLNGKNYLEWAQSVKLAIDGRGKLGHLTGETKKPELERSENSLVIAWLINSMELVIGKSYLFL
PTAKDAWEAVRESYSDLENASQILELKIELWQAKQGENEVTTYYNEMVSLWQELDQCYNDEWECSMDSVKAKKKEENERV
YLFLARLNREFDKVRSRILGKNPLPLRETFSEIRTEETGRKVMLKPDLNVELKPVIDSSALVTVKNEEDKKKKPLCDHCK
KYWHTRETCWKIHGKPLNWKNKGVDDHGFQSQNGQALQTTYFDQGQQPSPETSLFTREQLEILHKLLQSPQFRANAPKSS
NPSCSFAETVSSVSSAFLSVNSNQIDSWIIDSRASDHMTGSFRFFSTYTPCAGNSKIKIADGSFSAIAGKGTINLSPSLV
LHDTLHVPKLSCNLVSFRKLTRSLNCRVIFYSDLCEFQEKVSGKMIGSARESGGLYFLDNGNNSLQLNPIFLNSTFVLNK
VMLWHYGLGHPSFYYLRHLLPQLFRNKNPSLFQCEFCEMAKHHVDTSFPSQRYQASKPFTMIHSDVWGPSRISTMFGKRW
FVTFIDDHTRLSWVFLLKGKSEVKNVFETFHVMVETQFNEKIKIFRSDNGREFFNEQLGSFFRKTGVVHQSSCPDTPQQN
GIAERKNRHLLEATRALMFTSKVPQHLWGEALLTATYLINRMPSRPLEFKTPFKVFRESFPSSRLTTDLPLRVFGCTTFV
HVHNRSKLEPRAKKCIFVGYAPSQKGYKCYDPHARKIIVTMDLTFFESQLYFTTHLQGEYHLGEDSFFVILRKLDIKQMR
SLILQINTDVRDVGEDINKCDPRDDKDQSDLMIKTQKFKPEPVAPSNDKNKNGNREQKTEMQVYSRRNRTQEKRTEDSQH
CQKSVPQDLTVIQGTLPTDSISNSLDLDLPIAKRKGVRNTSKYPISMFVSYKKLSPSYSAFTSQLSSVEIPTNVQDALQV
PEWKEAILEELRALEKNETWELVDLPEGKKPVGCKWVFTTKFKSDGSLERYKAHLVVKDHTDISMHDYLETFAPVAKLNS
IRVLLTIAVNLDWSLxQLDMKNVFLNGHLEEEVYMDPPPGFEGKYKSKICRLRRSLYGLKQSPRAWFERFTQFVKRQGYV
QGQADHTMFTRHSLEGKTTVLIVYVDDIILTGDDVVEIKNLKERLASEFEIKDLGPLKYFLGMEVARSKKGIIVSQRKYV
LDLLKETGMSGCRPTETPIDPNLKFVKEGKLIDKGQYQRLVGKLIYLSHTRPDISFAVSLVIQFMHYPREEHQEAVYRIL
RYLKSSPGKGLFFKKNEQRSLEAYTDADWAGSSIDRRSTSGYCTFVWGNLVTWRSKKQNVVARSSAEAEYRSMALGICEI
LWLKRFLEELRRPVSFPMKLYCDNKAAISIAHNPVQHDRTKHVEVDRHIIKKKIEDGSVCIPFVPTTEQVANIFTKGLFR
TTFESFVSKLGMFAIYMPT
>DIRS-1_Lme_gag#LTR/DIRS 12-1940 via tfasty with DIRS-11_ACar_gag, 3 stopcodons. [Latimeria menadoensis]
MRNRVHWYRELFGGPSLSPTPSGSSGHRRGAKSDLSDPVHGVTQSLVGHASTHRGTVALKASRKSFPKHSAPTSSASAPV
LRAASEPQRRSAPKAPAPAVSEKTAVYLDSESELEVRSEPTAPKTPDLSPxRQSSKPRDASGPAPSDPRKSHRHDSSRIR
SHAARSEEATLGPLLRDILAWLTSLESGPRAPPIPSTPGAASRPLSPAPVLPSPDPVSELTAPTPDPAPVPASDPRASGS
SSRPPASGRTAESPDPVQAGPSSAVPKRVLxPIVSSEEEDKGEVWCEAEDVGHGEISDAFYTSTRTDSEQGGRATPSQDA
FFRGLIEKMAGVLALELSSASEADQSRFMQLLQGQSVRSRFQVPLHNIVPSTLRDICRTPSTVQPANKRVDRRYLVPEGE
GAPLASHPSAESTVASAANDQARTQRVFSSAPPDQDARRWDTLGKKVYSSASLGIRISSYLVHFSQYNYDLWGEVAHLAE
LVPEDKREDVxRLAADGVEVSRALMQGALDSCDTAARGVAEGVAIRRQAWLRGSGFSTEVQHQIADLPFSGGLLFGERTE
STLQQLKEAKSTVRSLAPLRQPQRPRPRFQPPGGTKRPFPQGQRSAGPPQHPFKRRRFTQLGKGAPGGGKPPKPRPRDPK
PQV
>DIRS-1_BM_yr#LTR/DIRS 3390-4352 [Bombyx mori]
LTGTWTSQEKNLLLSCWRESTIITYAPIWNKWVRFCQENSINSRVPELANVARYLGYLYLSHGLSYRTILVHKSVIASVC
ETISDIKITSSPIVKHILKAISLAKPVPSKLPIWDARILICYLKDYNIDLNSLYQVSRHAAAILLLSSGRRIHDLTLLHV
DSDHFIDNVDSITLHPIFGSKTDSSSYQQSSWTFVTAPDLRIDAVYWLRTLVNMTHQTRGNVSNLFLATKGPTKPATAAM
IGSWIKRLLADSGIQASAGSCRAAVASLNWVENYHINDILAKGNWQHEHTFRKFYQKHIINASNTNINCEKSLSQYFCPK
S
>DIRS-1_NVi_gag#LTR/DIRS 983-1645 [Nasonia vitripennis]
MKKEDIDRIMENYACVAELDGPKLNPQIMASMKEYALTRDNHMSEVQKMAGTALSIIGSVITSFYKDSESDLEFNLETLL
TLLYDSGKILSAIVHKQNITRKAFIEPGLSKETKAVLKDSKTDEFLYGKDLPEKIKEAKALNKVGDELKLSQPNKLGTST
NKSSNYRAPFVRRPPAGQMGSTAFTGRLKQRPFFRNKQQFVNHRAQWHSQSRPFNNQGKKN
>DIRS-2_AMa_pol#LTR/DIRS 1796-4234 via tfasty with DIRS-8_NV_pol, 1 stopcodon. [Allomyces macrogynus]
PDSSGMQTPLGGMLEIVHTDSVNSVPPASPLPPLETLLGNLSGLRPFFHDSPSQPVSLSLLEAAVGIMDGEAFTSRLLSV
CHGQDVVTRTALLEHFLPHPLPNVRVSGRFHAPLFQRVWLELHSARLVWETIPKGLRLDLEQTPPYRPTVTLYELPTEFA
AALETEVQGWVEKGAIQAVEPMPCSVAHPTFMVQQRSGKMRPIVDYRYINGFVRNDSFKMETFCSIRATVPDMEWAGVID
FADFYLHLAVHPDHCHFLRFQVGEQLYKLVANLFGLCVLPRIFTKLPKGIFGALRQVGSTLLAYLDDISLGAGDCVLATR
YWIAFCRLAQAHDFLISWKKAVLPARTFEWVGWExDLARKTFSPTAKHCAMLLHDLRQALTRDRMPLRQLASLVGKVDAM
APAVGLLRIHMMGLWAVLHQVVQRVPSSSVGWDRMMVSLSPLMREEIQMAMDLIASFSHSAPLTAIVDYTTQSDASGSGW
ALNAWMDGRPVRVFGNWTSEDLFPYQEGLLRAEIARLLWSKTPATEIVHIGVLEVLAVWKGLEALVAKGRICIMDRTVLV
QVDNLSSALYLNRQGGWRCLWMNLATKGTWLWLHRQRARLQAMHLPQEHNVLADKDSKLDFVDRHGWMLWPSLFRTLCQD
WPVMVDLFTSAANAQLPERYVSWRLDRHALAVDAFTIPWGQEESWIFPPWALLPHVLRKIQDDRATATVITPFWPSQVWF
PALLRLAVAPPVLLLSDAVLLLDGVETDHAPSTIRLVAWRLSGDSELSMEFLDLLQKLPSNAWQRAPGSRTIRLGAAGFA
GVRQSMPIPFAAL
>DIRS-1_RO_pol#LTR/DIRS 1014-2991 via tfasty with DIRS-8_NV_pol, 1 frameshift and 2 stopcodons. [Rhizopus oryzae]
ITSPLHRPTSPALQPLKPPQPQPQHTPQPPIQQNYSIPADGILPGGRLTNFYHNWKKLIQHPWPLKLIREGYQIQFTSIP
KPCYSPRRSVPAEEQKEINIAINKFLTAEIIEKCTDPIARGYLSRFFTLQEATKRRPILDCRRINQSIQVEHFKMEGVPA
LRDLIEPNDFMVKLDLQDAYTVLPIHPNSRPFLVFENLGTIYQYKALNFGLNVAPRIFSKILRYAIEPLRKQGIRMVYYL
DDICILSQSPRDLQKTTQRVITHLESLGFIINIRKSLLTPSHVQEYLVFEFNTKKMQIKVPELKIQKLMQRIKQAMTPTI
RTCRxMAGLLGKITAMIPVVGEALLHIRHIQRSLSRSLKRMHTIEKVLVIWINNRWKTFLTKKNGLPIQRIALKKPQITI
TTDSSDTGWGVNSPIIQTYGFWTKEEAQMSINVRELQSILFALKLHAERFRNPTIKILTDNNTSIKYTTKAGGTASVHLE
NIAVxIQDVCNSYNLQVIYQHIKRINNVEADRLSRIKKPLYESTIPRKFFKTIMERWGPLTIDMFVTRQNTQLPTYWSLR
PDPQAAATDAFLQHWPMTGLYAYPPWKLIPPVLQMIKRKKIKRIVLITPWWPTQFWHPMILGMKKLSKPIFYQLNPKTTL
VAWLLSGKHRTQLEYRRKQ
>DIRS-1_BF_pol#LTR/DIRS 1574-3751 [Branchiostoma floridae]
KRLLQQEKPGSIVGVSPPTEQKVQLITPRSPPLRAPPSHPAYNFVKPTFPIPDTGRTGLFLHNWKQITQDPWILQTVQGY
QLELLRQPFQFRIPITKIHSDTDSAVVDTEVEKMLNSGAIQPTQPTQGQFISSIFLVPKKNGGSRPVINLKHLNKAMQKK
HCKLEHFQKVIELLQPGDFMTNLDLKDAYFTIPVFHKHRKYLRFIWKATLYEFAVLPFGLTSSPRVFTKILKPVVAHLRS
LGVRCVIYLDDILILAQSADLCTEHTNLTRFLLENLGFVINIEKSQLEPNQIREFLGFKINSVEMKIYLPEPKVEKIVDL
CQNLLAQNSTSLKHLASIVGLMTSTTQAVPLAPLHYRYLQKDLRLGLKMMKDKYNRKIRLSPMAHQDLTWWINSLALWNG
ASLKPVTVLTIQTDASLQGWGGFCQKGKTGGRWSTEERNDHINVLELKAAFLSLQCFAKDAPQGQVHLRMDNSTAVAYVN
RKGGTRSVQLMLLSLEMWQWALHRGLTLSASHVRGEQNQLADTLSRVFNDRTEWQLDPQVFHQLTPFMTDVSIDLFASRI
NTQLPRYVKWGPDPSAIATNAFTIDWGTEIGYAYPPPILIPRVLDKLVQDTATVYLLAPVWESQVWYPRVLELLCAQPIL
LPKSPDLVRLPHNGQPHPLLPEMRMALWPVCGETSKVLAFRQDLQTSCSHLGAAAPRNNTMGPGRSGCTGAILGTEIQFE
VLSRMF
>STLV-3_tax#LTR/Delta gi|18071208|ref|NP_542260.1| tax protein [Primate T-lymphotropic virus 3]
MAHFPGFGQSLLYGYPVYVFGDCVQADWCPISGGLCSARLHRHALLATCPEHQITWDPIDGRVVSSALQYLIPRLPSFPT
QRTTRTLKVLTPPTTATTPKVPPSFFHAVKKHTPFRNNCLELTLGEQLPAMSFPDPGLRPQNVYTIWGCSVVCLYLYQLS
PPMTWPLIPHVIFCHPEQLGAFLTRVPTKRLEELLYKIFLSTGAIIILPENCFPTTLFQPTRAPAIQAPWHTGLLPCQKE
IVTPGLIWTFTDGSPMISGPCPKEGQPSLVVQSSTFIFQQFQTKASHPAFLLSHKLIQYSSFHSLHLLFEEYSTVPFSLL
FNEKGANVSDDELRDGPQPPTGGQIAESSV
>STLV-2_env#LTR/Delta gi|9629502|ref|NP_056912.1| env [Simian T-lymphotropic virus 2]
MGKIIAFLLFHLTCITITKQSRCTLTVGVSSYHSSPCSLAQPICTWDLDLHSLTTDQRLYPPCPNLVSYSNFHKSYSLYL
FPHWVKKPNRQGLGYYSASYSDPCSLQCPYLGSQSWTCPYTGPISSPSWRFHRDVNFTQEVNHVTLRLHFSRCGSSMTLL
IDAPGYDPLWFISSEPTQPPPTSPPLVRDSDLEHILTPSSSWATRMLTLIQLTLQSTNYSCMVCIDRTSLSSWHVLYTPN
ISASPGGDSLPILYPSLALPAPQPQPFSWSHCYQPHLQAVTTANCNNSIVLPPFSLTPVPSPGTRSRRAIPVAVWLVSAL
AAGTGIAGGITGSLSLASSRSLLFEVDKDISHLTQAIVKNHQNILRVAQYAAQNRRGLDLLFWEQGGLCKAIQEQCCFLN
ISNTHVSVLQERPPLEKRVITGWGLNWDLGLSQWAREALQTGITILALLLLVILFGPCILRQLQSLPHRLQNRHNQYSLI
NQETTL
>DIRS1_DR_pol#LTR/DIRS 1854-4113 From Goodwin & Poulter. Corresponds closest to DIRS10_DR in RepBase, but both DIRS1_DR and DIRS10_DR consensi contain many stops and shifts. [Danio]
MRWAMSSIGVAVSPLRPPSHPPPLFLAEGARQRVLPRPRLRLRPSGRGVHLESRQPLLPRAPLSPVNGPRSVPETGHPEK
RKLALSPLEGGAPITTVLFSATKTSVKEHFFPSPDVTARVLPVRDALPSGSQTLRASPVAHERWGDGLPSLSPPAPSPES
GCGARANRSPPAFPRDPRASRISTPTPRCPTAGTSAIVAMTPLARALPAWLARASPSRWLIRTIRLGYAIQFAKRPPKFT
GVYFSRVNPLSAPVLREEIAALLAKGAIEPVPPAEMESGFYSPYFIVPKKSGGSRPILDLRVLNRCLHKLPFRMLTQRRI
LQCVRPRDWFAAIDLKDAYFHVSILPRHRQFLRFAFEGRAWQYKVLPFGLSLSPRVFTKLAEGALAPLRLAGIRILSYLD
DWLILAHSREQLIMHRDEVLRHLRLLGLQVNREKSKLAPVQRISFLGMELDSITMVAHLSEERARLLLNCLRELDSKLVV
PLKFFQRLLGHMASAAAVTPLGLLHMRPLQHWLHDRVPRRAWHAGTHRVSVTALCRRALSPWNDPSFLQAGVPLGQASSH
VVVSTDASNTGWGAVCRGHAAAGLWKGAQLHWHINRLELLAVFLALHRFLPVLERQHVLVRTDSTAAAAYINRMGGMRSR
RMSQLARRLLLWSHPRLKSLRAIHVPGTLNRAADALSRQLLRPGEWRLHPESVQLIWARFGEAQIDLFASPENAHCQLFF
SLTEGSLGTDALAHSWPRGMRKYAFPPVSLLAQFLCKVREDEEQVLLVAPLWPNRTWISELSLLATALPWRIPLREDLLS
QGQGTIWHPRPDLWNLHVWSLDARKT
>DIRS-1_AMa_pol#LTR/DIRS 1269-3233 [Allomyces macrogynus]
GRQPRLKAPASPETTPWMSTSSPIWPTCRLGGQTSSRADTWASMVRDAESLRSVRRGATIDFIQSPRPNLTLRPFRLPEA
DRAVIDKEVSDLLARRCIEPTTEPAMLMNPFTVVQPSGKIRTCFDARPLNQFVRLRRFKMSGISTVRHLIRRGDYFVRLD
LKDAYHSVRLAPEVRRFCCFWWNGQFYRFTVLFFGLSSAPQIFSRLMSSALAPLVSSGMRLVAYLDDVLLLCSSCEEALR
QRDQLISHLGSLGFTVGLAKSQLEPSTTTTFLGFSICSISMTISVLRDKVRKVSREAKRLLHSVSSTPRKLAQFLGLANS
LAPAVAPAGIQQRFLQRNLHHGLRPGRTWECPVPITQASRTELSWWATEFPAWNGRALIPPPPDLTTDTDASASGWGVVT
PTGTAHGWWTRRESDMGSNWRELRTIEIAIRLNLSAWAGRTVLIRTDNITASCYVNRQGGHASTHLLDLAKSIWHLCMRH
RIDLRAQYLPGKLNTAADRASRSMDNHRYGLTDRGFRRLEEWFGPRTLDLFADRTNARCPRFWSLHPDPDADAVDAFAQT
AWPRRGGYAFPPPMLIPRVLHCVRAHRVNELVLATPAWYSAAWMPLVRRLARAEPLWLPPSAAWTPRFHSHRVLPSSRGI
LLWRVSWRGSPPPRV
>DIRS1_Odi#LTR/DIRS translation of gi|49035807|gb|AY634219.1| Oikopleura dioica DIRS1-like retrotransposon, partial sequence (two stopcodons) [Dictyostelium discoideum]
GAKEAHPREYHPNPPPVRSVLWNSDKPSKTNPHTWKEWIVDGQRMFDLAMKATDPSFEPSWDMISFRQEADFYAGIFQDY
LQLWHPVIKELEPPFRARAYSVLARGVDVFENLKHVKYQDPIVFRGKHRVAMDHTPHISNKQFFEKTETVNYEPPLNYRI
QDGVMVEGWPVFRNAKFPVHVGGPRHSRPLVINNPRGTLQQHPEIVDTLQKWSKTGALKLIDAAETEPLMTSALILVPKG
EGWRVCYDGSPLTFLETESVTCKLDDVKKVMATLKKGDVLIKLDDKSAFHHLLLDPMSSKLAAMKWGGSTFAYRAAAFGI
PRIPSEYQLINSAPINLLRKQGHMILLYLDDRLIIERPASDEERRDLLSGKKVPRSAFAICALASALGTFIHRKKSTFVP
TQRLGIPRFHLxHRERKHRLYPKPNGTGSNRKVIFTAxNKTIFPVKALERIRGKCVHFMYVERRMRLYIREMNDAIAQAQ
ESGFGIIPIGSRLRKELRRWLDPSLVSRETKWIETGVCEMHISLDNARRTLVYTDASGGAGGMFIDELKVNEPFYWTKKM
APKNIYMKEAHAILIALKKKGSLLKNRRLLLMCDNQIVCSAIYNGSKASSDLNDLILEIYEVARKYNIDLRAEYVVTTEQ
LADEPSRTFDFNECKITDLAYAELIRKWGRSPSVDAFASEENARSKRYVARYHDDGAWRTDFFQICNWQAGDIIYVFPPP
KIAEIALRYLEKHASKHSWALVVITYEAVSLPLAAAVRNGWRLERLTTTPAVVRPFRSFSPEWDYYKPIQPGANTWVIFH
EPE
>Copia-101_GM#LTR/Copia 119-4111 via tfasty with Copia41-PTR, 85.9% SW:4920, 3 stopcodons. [Glycine max]
MSSENFVQPVIPRFDGHYDHWSMLMENLLRSKEFxQVVADGVATPSDDVALTDAQQKEYEVMKLKDLKAKNYLFQAIDRS
ILETILCKDTSKEIWDSMKKKYQGSSRVKRAQLQALRRDFEVLQMKEGESVTDYCSRTMGIANNMRFHGEKMTDTTIVEK
ILRSLTPKFDYVVCSIEESNDIDDLSLDELQISLLVHEQKMNRSSTMEEHALKASTNTHSNNSRGRGRGRGRGRGHGDRG
NRDFSNNSKDNNDQFQGNGRGRDHDKSKVQCYRCHKFGHYASNCYTRLPNLKEKGESSNFIKEKEVETLLMAVEDAKDSE
TEIWYVDTGCSNHMSGSKSSFSYLNEDFHSTVSFGDCSTVKVMGKGDIKIKTRNGFVETISNVLYVPDLKSNLLSVGQLQ
EKGYEIFISKGTCEIFDPVRGAIAVIKMNSNRLFPLKIESIHSSLMAKDTVSTWLWHYRYGHLSFSGLKTLEQKNMVIGL
PQITAPSQVCEECVVSKQHRSQFPNGKSWRAKCVLELIHSDICGPINPSSNGGKKYFITFTDDFSRKTWVYFLQEKSEAL
SSFKSFKARVETESEKTIKSLRTDRDGEYCSDEFSTFCVNHGIRKELTIAYTPQQNGVSERKNRTILNMVRCLLTKSGVS
KEFWPEAVNxSVHILNRSPTFAVKNMTPEEAWSGRKPTVDHFRIFGCIAYAHILDKKRSKLDDKGEKCIFLGVSDQSKAY
KLYNPTTKKIIISRDVVFDEERFWENNIDETKQILANFDEDNEDEELQTRELEEQRIPAITVEDERPQRARRRLAWMSDY
EVTGIEDPITHFALFSDCDPTTFESVVKEEKWRKVMDDEIDSIERNDTWELCDLPNGHNTIGVKWVFKTKLKENGEVDKY
KACLVAKGYKQQYGVDYTxVFSPVARHDTIRLVVALAAQNAWPIFQLDVKSAFLHGYLEEQVFIDQPPGYVKIGNEHKVY
KLKKALYGLKQAPRAWYSHIESYFIKAGFTKCPYEHSLFIKSDEKGKMLIVCLYVDDLIFTGNCTLMFDEFKKSMMNEFE
MTDLGMMHYFLGIEIVQSDVGIFLSQKKYVRDILDRFQMHDCNSVNTPVECGLKLHKDPEGKKINSTLYKQIVGSLMYLT
ATRPDIMYFVSLISRYMENPTEMHLLAAKRILRYLQGTREFELFYKRGEKFNLLGFTDSDYAGDSDDKKSTSGYVFMMGS
AAISWSSRKQPIVTLSTTEAKFVAASACACQAIWLRNILEEVHFKQQGPTLIYCDNSSTIKLSKNPIMHGRSKHIDVRFH
FLRDLSNEGIIDLIYCKSEEHIADIMTKPLKLSAFQKLRNLLGVCMLNESH
>Copia-97_Mad#LTR/Copia 50-4078  [Malus x domestica]
MSDGQDENPFGSSSGFARTTVQNAKFEVEKFDGTNNFGMWQCEVKDVLAQQDLLAALGEKPEAMSKPEWEKLNLWACSSI
RLCLAKTQKYFVMRETLASVLWQKLEDKYMTKSAENRLHLKKKLYRFQYKEGTKMIRHLDAFNKLIADLLNLDEDIKDED
KALILLNSLPDSYEHFVTTIMHGKETVKFEDVSNALMNYEMRHRDKNHDSTSEALFVRGRSSERRSSSSRKKSQSRPRGN
SKGRKPLERDECAFCHNKGHWKKDCPRLKTKGKESSEANVAEVETDFSDFALTTSSSFDCATKWVLDTGCTHHMTPHKDW
FSSLKEFDGGVVFMGDDNPCTTKGIGTVRLKLHDGMVKELTGVRYVPNLKKNLISLGTLESKGFRFHSDGQTLKVTYGAL
VVMKAPRCGHLYLLQGSTVTGEASVVSENMGTSDSDTTRLWHMRLGHAGEKALQGLVKXGLLKGATTCKLDFCEHCVLGK
QTRVKFGTAVHQTKGILDYVHSDVWGPTKTPSLSGRHWFVTFVDDYSRRSWVYTMKHKSEVLSIFLGWKKMVENQTGRKI
KILRSDNGGEYTSDPFFKVCKEEGIVRHFSVRGTPQQNGVAERLNRTLLEKVRCMLSQSGLSKSFWAEAVXYACHIINRL
PSAAVQGKTPMEVWTGKPSSDYDYIRIFGSPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPEMKKLVISRDVTFDE
ESMYKDSEKNVKDVQQVELEKVASGTSNPISADVEATTSEEVGDHEDVEEVELEDSIQVEEQVSPQESIAKNRGKRQITK
PARYSDYVAFALPIITDDIPSNFEEAIESEEKERWCNAMGDEMNSLLKNKTWELAKLPKGKKAIGCKWVYAKKEDADEKS
NVRFKARLVAKGYAQKEGIDYNEIFSPVVKHSSIRIMLALVAQYDLELVQLDVKTAFLHGDLNEEIYMCQPDGYTVKGKE
NLFCKLKKSLYGLKQSPRQWYLRFDKFMRGQNYSRSQYDHCVYFKKLQDGSFIYLLIYVDDMLIASKNVEEIEKLKKQMK
NEFEMKDLGEAKKILGMEITRDREKGLVSLNQRQYLEKLIRKFGVHDSTKPVSTPLAPHFKLSSLQCPKTDKEKLQMKNI
PYANLVGSLMYAMVCSRPDIAHAVGMVSRYMHNPGKEHWQAAKWILRYLHGTRDVGLCFERDDSGIGHFAVGYVDSDYAG
DLDGRKSTTGYVFTMAKGPVCWRSILQSSVALSTTEAEYMAVAEAIKEAIWIHGLIRDLGVDQKQVEVHCDSQSAIYLAK
YQVHHARTKHIDVRYHFVREIVGEGEIILQKIPTKDNPADMLTKVVGVAKFVHCLNLAHILPI
>Copia-103_GM#LTR/Copia 63-4436 via tfasty with SHACOP2_MT, 77.3% SW:3729, 3 frameshifts and 2 stopcodons. [Glycine max]
MGSAPSSSVPQSFPNSVAEKLDDSNYLHWHQHVEPVIKSHRLQRFMVNPIIPPHYLTEDDRVADHINPDYEAWEVQDQTL
LVWLQSTLSKSVLSHVLGSYHSYQVWNKIHEHFSLHMKTRARQLRTAMRAITLDSKTIEEYLRKIKGFVDELVGVGVPVR
HEEYVDALLEGLPSDYASVVSIIESKKxTPSIAEIEVLLYGHETRLMHYDKKHMVMNSASMNYMQGYLYPNTYKKIGDSG
GSRGAYGPGGSRGAFSDRGAGRGGGGSNRGRGGERFANFQCQICLKFGHTANVFHFRSDVTFHPHESLTFIDPLHYSLLP
YSTGSVRTSNTWVNPNSKNSGPSHSQPSAMLTSSTSQGNGQPGTTWIPDSGASFHVTxNSQNIKQFTHFDGPDQIFISNG
EGLSISNTGSASFISPNDVGITFKLHKLLHVPSISKNLLSVSQFAKDNSVFFELHPHVCLVKSQETNKIFLKGVVGADGL
YSFHNLKLQKSPSLLMFVVSSAASPSSTLTVNNNSSTIMSDFVSSSLSIANLWHARLGHPNDHVMKLVLNHCNTSSSNKN
STEFCASCCMGKSHRLPSHTSTFVYSPLELIFIDLWGPFHITSHSDYKYYVSFIDAFSRYTWIYPIKSKAETMSVFQTFK
SMVELQLNLKIKSVQSNWGGEYRPFSTLLASFGISHRLICPHTHHQNGVVERKHRHIIDLGLTLLHHASLPLQFWDYAFT
TSIYLINRFSTTSLKFVTPFVSLFKKEPDYYFLKTFGCACFPLLRPYDTHKLNFRSQECLFLGHSSSHKXYKCLSSXGKV
YISKDVLFNELRFPYSDLFPTSTSSVSNLDSYFSLNPNLSPPFVSSVSQTSQVSDTXSVPLVPPGFSPLSTQSSGNTESV
PQNSTSTVSASVQPVNSNSTTLASSSSESISVPVNTHPMQTRSKSGIHNPRLHPSLFLTHSEPKTVKQLALANXDWLTAM
RQEYDALLKNRTWDLVSLPPNRQAIGCKWVFRVKENADGSINRFKARLVAKGFHQVHGFDFHETFSPAIKPVTIRIILTL
ALSHGWKLFQLDVNNAFLNGSLEETVFMTQPPGFEVADKSLVCKLNKAIYGLKQAPRQWFDRLKSTLLQFGFIGSKSDSS
LFIFRQQMHVVYLLVYVDDIILTGSSPSLIQQITYKLNTAFSLKQLGHLDYFLGLEIKYLPNSSILMTQTKYIRDLLHKT
NMAEAHSISSPMVSNCKLSRRGADAFHDPTLYRSVVGALQYATLTRPEISFAVNKVCQFMAAPLDSHWTVVKRILRYLKG
TLFHGLLLQPTSVTKPLVIRAFCDADWASDVDDGRSTSGTAIFLGPNLISWWSRKQKVTARSSTEAEYRSIAQTSTELTW
IHTLLTELQVSFTTPVIFCDNQSAVSIAHNPVFHSRTKHMEIDVFFVREKILAKQLTIVHVPALDQWADILTKPLSASRF
EVLRGKLNVKSVSPENSSP
>Copia-109_BRa_pol#LTR/Copia 1998-5489 via tfasty with Copia-85_ST_pol, 1 stopcodon. [Brassica rapa]
MDITNGTSTKINARDICIPDSGTTHTILKHRKYxRFNMDKNITVHTISGPADLIEGIGKAHLTLPNGTKFSINNALFSPN
SKRNLLSFKDIYLQGFDTQSATEDGKKYMYITLEKSGKQKVLEKLPKLSSGLHHTYISAIESHLVIKENSSDFTLWHDRL
GHPGTTMMRKIIENSHGHSLKPQEVYQGNKMTCTACSLGKLIIRPSPTKIDKELPKFLERIQGDICGPIHPPCGPFYYFM
VMIDASSRWSHVCLLSSRNMAFARFLSQIIKLRAQFPDYPIKRVRLDNAGEFTSQAFNDYCMVTGIDVEHPVAHVHTQNG
LAESLIKRLQLIARPLIMKSKLPTSVWGHAIVHAEVLIRIRPSAYHKYSPIQLAFGREPNISHLRIFGCAVYVPIAPPQR
TKMGPQRRLGIYVGCDSPSIIRYLEPQTGDVFTARFADCHFDEKVFPVLGGENKQVGKDIKWCVPSLLHLDPPTKQSELE
VRRIMHLQSIANQLPDAFADTKLVTKSHIPAANTPARVEMPHERGVEDNTRESKIRLKRGRPIGSKDKNPRKRKESEKQN
LSNIEEKLEEINNEVNDNVEHHDSEENHEISINYIHNRKIWNRNKVNGVDDLFSYFVSKEIDEENDDPEPKSILECQRRH
DWIKWKDAIQVELDSLNKREVFGPIIITPEAVKPVGYKWVFVRKRNEKNEVMRYKARLVAQGFSQRPGIDYEETYSPVMD
AITFRFLMSLAANQNLEMRLMDVVTAYLYGSLDTDIYMRIPDGFKMPEPLSSKPKELCAIKLQRSLYGLKQSGRMWYNRL
SEHLTKEGYVNNPICPCVFIKKTSSGFVIIAVYVDDLNIIGTKVEIQKASDYLKGEFEMKDLGQTKYCLGLQIEHSQKGI
FVHQSTYTKRVLKRFNMDKSTPLSTPMVVRSLNVENDPFRPHEENEDILGPEVPYLSAIGALMYLANCTRPDISFAVNLL
ARFSSSPTQRHWNGIKHVFRYLQGTIDLGLFYPNNTNGEIVGFADAGYLSDPHKARSQTGYVFTVGGTAISWRSQKQTLV
ATSSNHAEIIALHEASRECVWLRSISKHILSSSGINVDSKPTIIYEDNAACVAQTKEGYIKSDRTKHIPPKFFSYTQELE
KNKEIEVRYVRSCDNAADLFTKSLSTTTFRKHVYNIGMRHQQDL
>Copia-105_AA#LTR/Copia 69-4061  [Aedes aegypti]
MEEEKFDRVLLPLFDGSNFAAWKFRMLILLEEHELEECIHTYAAEVEELVVQEGDTNEVKAAKAKKLEKRMKKDRRCKSL
LVSRIHDTQLEYIQGKQFPKDIWDALHRVFERRSIASRMHLKREMLQLRFEGGNLQQHFLRFDKLVREYRSTGAVLEDLD
VVCHLLLTLGPSYSGVVTALETMPEENLSLEFVKCRLLDEETKRRGIESSSSSGGDAAFSGAKQVKKKKLICFHCKKEGH
KQIDCSDRKQQGNQKNHRKSKANVAEADAGKGICFVGVSGGMDLPEDQRTRWYIDSGATDHLVRDKVLFSELHRLKKPVE
IAVAKDGETIVAEFAGTVKIISVVNGKPIDCTISDALYVPKLRCNLFSVMKVEKAGMRVVFECGKAKVYNGSEIVASASR
REKLYELDFYSTRQSAGDALLSCGRIRKSSELWHRRFGHLNENSLKQLMQSGMVSGMNMSSVDNSDKDMIVCESCVVGKQ
TRKPFSSSVAKRASRVLELVHTDVCGPVTPVGLSGVQYFVTFTDDWSHFTVVYLMQSKDQVVEYFEEYEAWATAKFGQKI
SRLRCDNGGEYKNKRFLKFCRSKGIQIEWTVPYTPQQNGLSERLNRTLVEKARAMLKDSGVDKRFWGQAVLTAAFLTNRS
PTNALSTKQTPFERWESRKPNVSNVRVFGCKVFVHVPDELRRKLDSKAWSGIFLGYSHNGYRVWNPMKKQIVVARDVDFV
EDSVSLVKRNLPVDQVVHVPAEEEDDANSELEVPEEDPSDGEFESFVEEEPAEEEEEIASGGRPQRNRSAPAWHQDFEME
YASFALSAVNYVDEIPGTIAELQKRDDWKEWKAAIEDEMSSLKRNNTWTLVKKPEGRSVVSCKWVFRIKRGEAGRPEKYK
ARLVARGFSQKKGFDYSETYSPVAKMDTLRAVLALANQSGMHIHQMDVKTAFLNGELSEEIFMAQPDGFEQGRGLVCRLN
RALYGLKQASRAWNDKFHRFVEKLGFTRSDNDQCLYTLGSGKEQVIPVLYVDDVLIASSSLKILQEVKRKLSERFEMTDS
GEVRQFLGMNIERDFEEGVLRISQRNYLDGLLRRFDMSECKPRSTPIENRLKLSKADEKQRTDKPYRELIGCLMYASLTT
RPDLSAAINFFSQFQACPSDEHWNYLKQILRYVKGTLDVGLVYRKREGAALLEVFTDADWANSNVDRRSVSGYVCKIYGC
TVSWTTRKQQTVALSSTEAELAALCLAICHVVWMRRLVCDLGRKYGQAISVFEDNQSTIRIAEDSKDHSRLKHVDTKFHF
VRDLVQRGVVAIKYVRSSDQEADIMTKGLPVAAFRGLCAKLGLERREDYRG
>Copia-94_GM#LTR/Copia 44-4363 via tfasty with Copia-91_VV, 80.7% SW:4373, 2 frameshifts. [Glycine max]
MEREKTENTTKGETGTLLTSSPEGIALPITGHKLNGQNFTQWERSVCIFLQGKGKERYISGDPKRPEKGDPNLQKWQLEN
SLVMSWLLNTMTNEIGENFMYYDTAKEIWDAVKETYSNIDNTSAVFEIKSLLHDLRQGEKSVTEFFNTLSRYWQQLDTYE
EIEWKCPGDKKKYRELVEKDRIYKFLLGLNRDLDEVRRRKFMLGNIAPAPYIENSALAARGNQTRPPQKKNRPWCDHCRK
LGHTKETCWDIHGKPPDAKSFRNKETRGNTAYNTSQEGEVSSDPSPFSREQMEALQKLLQQTLLSAGKPTSTAKVAQKGN
FSHALNTSKGKRKSWIVDSGASDHMTGDITVFDNYSPCHDHSTVRIADGTLSKVVGKGSVVISEDITLNSVLYVPKLDCN
LLSISKLTNDLNCVTKFSPNVCVFQILGSGKTIGSAEECDGLYLLQVKDSNKKPKANSCVAIPSKSEESVMLWHYRLGHP
NFMYLKKMFPSLFNKRLRNFHCETCQLSKHTRSTYPPQPYKPSQPFSLIHSDVWGPSRASNITGSRWFVTFIDDHTRVTW
VFLMKEKSEVGRIFEIFHTMVQTQFQTNIKVLRTDNGREYYNSVLNSYLQKNGIVHQSSCVDTPQQNGVAERKNRHLLEV
TRSLMLATNVPKQFWGEAVLSATYLINRMPSSVLNFNTPHTVLQTTYPTSKILTSIPLKVFGCSAFVHNLDPHRSKLDPK
SIKSIFLGYSPHQKGYKCYSPTTRKFYHTMDVTFFEHQPYYPKVGIQGEKTPVSTDMTEFQLLDSKRMDGAPLETAETAP
AEPEIEETVSAVPTETASAEPEEARPRSQDQNWRVYVRKRRNQKAVEPITVPMQSHESDQAPENEIPTGNFVPISESVHT
NTSNLDMPIALRKGVRTCTQHPIEKYMSYGKLSQGYKAFVALLDSAHVPRNIQEAFQHPEWTAAVNEELQALAKNNTWEI
TTLPKGKRPVGCKWIFTIKYNADGSINRYKARLVAKGFTQSYGVDYEETFAPVAKLNSVRVILSLAANLDWPLHQLDIKN
AFLNGELEEEVYMQIPPGCEAASTSNKVCKLRKSLYGLKQSPRAWFERLTRVVKKEGFAQCQSDHTMFVKHSLEGKVTLF
IVYVDDIVITGDDHDQINHLKSFLAREFEVKNLGQLKYFLGMEVARTKHGIYMSQRKYTLDLLQETGMLGCKAANTPIEP
ANQNSSEDDSPPADKTRYQSLVGKLIYLTHTRPDIGFAVSMASRHMSNPTDVHEKAVRRILQYLKGTPGRGLYFKKNSDK
GIEVYTDSDWAGCASDRKSTTGYCTFVWGNLVTWRSKKQSVVARSSAEAELRAMAHGICEGIWLKRMLEEIRIPTNSTMK
ILCDNRAAISMAKNPVHHDRTKHVEIDRHFIKEKIDQDIIAVTHVPSCNQTADILTKALPRRSYEDIRTNLGMIDIYHPD
>Copia-92_Mad#LTR/Copia 28-3960  [Malus x domestica]
MDQSNVGVVKQHVEKPEKFKGVDFKRWQQKMLFYLTTLNLSHVITSEAPKAPEEGDIPAEILQAIEAWTHSEFLCRNYIL
NALDDSLYDVYSSYKTAKXLWESLDKKYKSEVASSKKFVIGKFLNYKMSDTKSVVKQVEELQVIVHELDEENLGLKEGFV
VGSIIEKLPSNWKDFKIYLKHLTEDMSMDQLILKLRVEEDHRKNEKYDVSSLEAKANVVEGGDSHKARHHQKNKGKDAAA
KKALTAVKGKTFKKIKGGCWVCGKTGHRAKDCRHKKDQNSENSNQANVAEDKFVAVVSEVNLLTNSNDWWVDTGATRHVC
ADRNLFVTYQSVDGGENLYMGNATASAVAGKGKVTLKLTSGKELSLTNVLHVPDIRKNLISGSLLSNKGFKIVFESDKFV
ITKGGVYVGKGYLAEGLFKLNVLSADAINNNNKPSASSAYLIESSTLWHARLGHVNFRSLQRMVNLGLLPKCSMNKVSKC
EICTESKYARHSYKSVEKSNEILGLIHSDLCDFKSTPTRGGKNYYISFIDDCSKYCYVYLIHSKDEALNMFKTFKAEVEN
QLDKRIKVLRSDRGGEYESNDFAEFCSTHGIIHQTTAPYTPQQNGVAERKNRTLKDMINSMLNSSGAPHNLWGEALLAAN
TILNRIPHKKTNQSPYEIWKGRLPTYKTLKVWGCLAKVQVPLPKRQKLGPKTVDCIFIGHANNSSAYRFLVHKSEIADIH
VNTILESAEAEFFEEIFPYKDRSYVLNKRVHDDTTRNDDENHASTSRVQSQDLEPRKSKRAKIAKDFGPDFLTFITEEEP
QTYKAALESSEAPYWKEAIQSEMESIMQNNTWELVNLPPGNKPIGHKWIFKRKLRPDGTIDKYKARLVAKGYRQKEGLDY
FDTYSPVARITSIRLLIAIASVYNLEIHQMDVKTAFLNGELDEEIYMEQPEGFIVKGQEKKVCKLIKSLYGLKQAPKQWH
EKFDHNMITNGFVINESDKCIYVKQTKNACVIVCLYVDDMLILGTNKDVINSTKKMLNSSFDMKDMGIADVILGVRILRN
SDGYVLTQSHYVEKVLKRFGHYDCKPAVTPFDPIHKLTKNEEESVSQLEYTQVIGCLMYIMNCTRPDLAYSISRLSRYSS
NPGRDHWNALIRVLRYLKHTMNYGLHYTQYPPVLEGYSDANWISGSTDSKSTSGYVFTLGGAAVSWKSSKQTCIARSTME
SEFIALDAAADEAEWLKNFLEDIPLWPKPVTAVCIHCDSMAAQGRAKNAEYNGKSRHIRRRHKTIRQLLKNGTISIDYIK
SKENIADPLTKGLSKDQVAFTSRGMGLKPTQ
>Copia-91_Mad#LTR/Copia 500-4710 via tfasty with Copia-7_Mad, 1 frameshift. [Malus x domestica]
MNVSFSVNPSSLNLNTVEPLTGVNYRKWKQDLEIVLGVMDWDLALRTEEPPALTDDSTSSQKSKYEKWHKSNRIALLIIK
RSMTDVVRGGFPDATNAKDFLKSIEAKYRESPKTETGNLMNALTTMRYDGVQSVREYILKMVDVAGKLNALEVPISDTFL
VHVIMNSLPESYTQLKVYYNGLREKWDVNELIAICVSEEERMKKEKFEKERIESVNFVQSATRATKPHVPDTAKKDSTKS
VPSPKRNFKLNKPSVFKRYFCKKAGHMKKNCPKYKAWLAKQEAKKGKNVFACFESNLINIPSTEWWLDSGSSIHVTNSLQ
DFTTRRTPNKDEVKVSVGNGRRVEVKALGSVRLKLEFGFYLELDNVVYVPSMKRKLISISKLVLLGFYFTINKRGFNVFY
ESSQVGHGFMSDGMFQLKLNQTEYVFNVQDDKTKTQQSSILWHKRLGHISKQRMELLVKNEILPPLNFNDFDFCVDCVKG
KMTNTRKEGSTRSKQPLEIIHTDICGPFPTQTLEGNKYFITYIDDFSRFCFIYLISEKSKALETFKIYKSEVENQLERNI
KVVRSDRGGEYYGRYTEIGRNPGPFALFLQERGIVAQYTTPGTPEQNGVAERRNRTLMDMVRSMICRTNLPSCLWGEAVK
TANYILNRVPSKSVEGTPFELWTGRKPSLNHLHVWGCRAEAKIYNPGYKKLDSKTVSCHFIGYAERSKGFRFYCPNQNTR
IVETGKAVFMESDASVDSGTRVEGFVFEEEINNKEARSKTLIVITAIMAPIVVVTENMGSNDSDEPCNEIEVAHDIELHD
NTVVQDVVEEVVTENQQRQHHAHEDNITAAGAANIRRSSRVRKPTTLNDFVYSTRVDTDLSEFNDPLSYKEAIAGPDADK
WIEAMKSELSSMANNQVWDLVEQAEGTKPIGCKWVFKTKRDSNGNIERHKARLVAKGFTQKEGVDYKETFSPVSTKDAFR
VIMSMVAHFDLILHQMDVKTAFLNGDLEECIYMRQPEGFKEGEGRNLVCKLNKSIYGLKQASRQWYLKFHRIVKEHGFTE
NPSDNCVYLRFSGSNFIILVLYVDDILLATNSHSLLDDTKTFLQKHFEMKDLGEATYVLGIEIKRDRRRGLLGLSQKAYI
EKMLKRFNMSSCGTTEMPISKGDKLSKLQCPQTDLERKAMDDKPYASLVGSLMYAQVCTRPDLAFTISVLGRFQSNAGEA
HWNAAKRVLRYLQRTKDHMLVYKRTESLVLEGYSDSDFAGCPDDMKSTTGYVFLMACGAVSWKTVKQGTVAASTMVAEYL
SVCETVNQAVWLKNFIVGLQVVDSISRPIQIFCDNNAAIFFTKNNKRSNATRNLDIKYLIAREKVMAGLVKVDYLETGSM
IADPLNKAVPTIVFKKHVTSMGVLAGFDAANSCRNQWEQTDAGN
>Copia-93_Mad#LTR/Copia 87-4469 via tfasty with Copia52-PTR, 4 frameshifts and 1 stopcodon (all after pos 3611). [Malus x domestica]
MADSDNTIIKKGDGESFADPYFLHPSDHPGLILVSKKLTGDNYNTWCRAMEISLGAKNKIGFINGKVNMPSETKQPDAYA
AWQRCNNMLLAWIINSIESDISDSILYLKTAYEVWEDLRERFSQSNAPRIFQLQREIASLTQGQQSVAVYYTKLKGLWDE
LASYSSSTICTCGAQHETNRLMQFLMGLNESYSAIRGQILLMNPLPSYRQAYSSIIQEEKQRELGTGSRSLTEPAAMAVR
HQQQSSKKQHQQSQTSSNSRPPLHCSYCDAKYHTVETCWQKNGYPPDHPRHNPNTTRNSKQNGGGSGFSRGSSSAHHVAS
TPTIKDLQAAVPNLSEKQYADIFSALTSKNDKSQAANEAPQAHAALTSPPPSGLSPLVPGRWIIDSGATDHITCSSSLLT
NSINNTSLPPVSLPSGEKASITSIGNIQLSDLLQLKDVLCVPSFQVDLLSVGKITDGLHCSVTFFPSWCILQDLISKVTI
GVGKRRGNLYYLVALASTSSLQNRPSCHLITVSADLWHRRLGHPSLGRLQYLANQTLNFPFDSSHRCHVCPLAKQTRQPF
SRSSISTSSFFELLHCDIWGPHKTASLTGAHYFLTIVDDFSRFTWVFLMRHKHETQPTLKTFFAYIETQFHTKIKQIRVD
NGGEFYSMRDFFSDNGIIYQHSCVYTPQQNGVVERKHRHILETARALRFQSHLPVKFWGECILTAAYLINRLPTPLLSKK
SPFEILYNKPPSYSHMRVFGCLAYATSVHPSSKFSPRAHRCVFLGYPPGQKAYKLYDLETHKIFTNRDVIFLEDTFPFDP
STTAAPSPPLSDLPHSTPLPIPLDPTTLDHSTTTPLDIVPHTSTPLDPPLDPSPPPDSSSHPPTFHPLTDPPTDPTPDLP
ISTQPTRFSTRHKEPNVRLRDYVCSQVMLPPLQSSSPSSSGSTKGTRYPICNFISYHRYSPLHLSFVAHISRGVEPSSFA
EAIQDPHWHEAMDSELEALSSNNTWTLTPLPPGKRPIDCKWVYKIKHHADGSIERYKARLVAKGFTQAEGIDYHDTFSPT
AKMTTVRCLLALAAGQSWSLQQLDVNNAFLHGDLQEEIYMSPPPGLRRQGENLVCRLNKSLYGLKQASRQWFAKFTEAVH
AAGFVQSKADYSLFTRKSGKSFTALLIYVDDILITGNDVDAINSLKQFLHTRFRIKDLGDLKYFLGIEVSRSKKGICISQ
RKYALDIIKDGGLLGARPGFPMEENKLSDKGELLKDPSLYRRLVGRLIYLTVTRPDITYSVHVLSRFMHEPRQPHMDAAL
RIVRYLKSAPGQGLYFQSDNKLNLRAFCDSDWAVVRxLDVHTGYCIFLGNSLISWRTKRQKTVSLSSAEAEYRAMAGTCC
ELTWLRYLLTDLHVPISGPAIMSCDNQAALHIAANPVFHERTRHIEMDCHFIRDKILDGSIATRYVSSSQQPADVFTKAL
GKENFHPMLRKLGVLDIHSPT
>Copia-93_VV#LTR/Copia 38-4402 via tfasty with Copia-81_BRa, 78.0% SW:3885, 1 stopcodon. [Vitis vinifera]
MAGDGKKGDDGGSNSDRKILTPYALTSNDNPGNIITQVQLKGENYDEWACVVRTALRAKKKYGFVDGSIKQLDNDSPELE
DWWTINSMLVSWVFNTIEPTLRSTISYMENVKELWEEIKQRFSIGNGPYVQQLKSDLVNCKQERQDIVVYYGRLKSLWDE
LNNYDSIPVCTCTGCKCNITTQLEKKREEERVHQFLMGLDEDGYGTVRSNILSTEPLPNLNRVYAMIVQQERVRTMTRTK
EERGSPMSFAVQAGGRNLGRDGKDKTMICSNCKRKGHEADSCFQRIGYPEWWGDRPRTTTGGRSGGRGRGVQxGTGGGRG
RGGTARANAVQTSGTDGGRSVVTDSDRTGISGLSDEQWATLLTMLNSHKCGANERLTGKQNILPWIIDTGASHHMTDTYE
CLNDLRDIMPCPVGLPNGAETKALKEGTVTLGEKLKLRHVLFVPKLKCNLISVSQLLDDSNLVVQFTNKICVIQDRNSRM
LIGAGEQREGLYFLKGVAPIRAYKTTSIASYELWHRRMGHPSSRVVNLIYEVDSVGRNDGVKNKFCDICFRAQQTREVFF
SSDNKAKECFDLIHCDLWGAYRVPASCGGIYFLTIVDDYSHAVWIYLLNRKDEVACVLKNFIVMVRRQFEKNVKIVRSDN
GTEFMCLTKYFAEHGILHQTSCVGTPQQNGRVERKHRHILNVARALRFQAHLPIEFWGECVLTAGYLINRTPSVLLDGKT
PYEILYGQAPSYKHIRTFGCLCYAHDQNRDKDKFASRSRKCIFVGYPFGKKGWRLYDLESGEYFVSRDVIFVEVEFSYFN
NVVNSSLTENRVVNFSTDDEDPYMQNDMEEQQASVSDVEHEIDVEMGHNMEMATDGNTEVGDRGDTDVSRPMVSEEQFGK
GKRVKQPSVRLKDYVTHTIRVSPSASSSFQSKSSGTPYHLAHYVNCDKFSAQHRFFLAAVTIGCEPSTYAEAIKDECWRE
AMRKEIQALEDNETWTVEDLPPGKKAIGSKWVYKIKYNSDGSIERCKARLVILGNKQVEGIDYNETFAPTAKMVIVRTFL
AVAATKGWELHQMDVHNAFLHGELDEEVYMQMPSGFASPTPGKVCRLRKSLYGLRQAPRCWFAKLAAALTGYGFKQSYSD
YSLFTYEAQHIQLNVLVYVDDLIISGNDGTAVQQFKDYLSRCFHMKDLGKLKYFLGIEVARNSDGIFLCQCKYTLDIISE
AGLLGAKLAGTPLEQNHKLALAANSDLRDPGQYRRLVGRLIYLTITRPKLSYCVHMLAQFMQQPKDEHWEATLRVVRYLK
GNPGQGILLRSDCDLKLYAYCDSDWASCPLTRRSLTGYFILLGNSPISWKTKKQHTVSRSSTEAEYRSMATTTCELKWLK
GLLSTLGVMHSDPMHLYCDSQAALHITANPVFHERTKHIEVDCHFVRDEIQNGAIHTKYVHTSMQLANIFTKALGKRQFD
FLLRKLGVRNPHAPT
>Copia-93_SB_gag#LTR/Copia 53-2152 [Sorghum bicolor]
MSTSKEVSLELLLLDGSNYTSWSACMLDIFRAMGPQIEQIVDVSISPPSDNLDYLSREEVKCLQYNAQATNVLFSALSED
VLDAIIFGDGEPLDDAHIIWTTLKERYGSSKCDEKLLSLEEPLEECSTSPINNEPQVILPKGLMDHTTSTSSPTHDLIDG
NEIDGENNAFTCGTSTSSSFCCSNILKEGEACDRWRPNDESTSPTSSTLHDTSPMCLMAKGEKVKSKAKPPSPPSDISSS
DLSDSSSDDESSDEEIDDIIKNLDPKTKLFISKLMEDLESIQAELATRDDDLIAQENIYIASKEALALERSEVASLHKAL
AKEQDDHALTRKANIALNQKYCDLDEKHKVLELQYNLLWESTSHPSKAKDASTPSTSQGCGKCFNLDLNIYATNLANMEV
MRKEIARLNEIIAAWCMNDKIQDAGKKIVNGFECVQFERKEQFGTVQPAQIAAVPHPKGGSAAPRKNGKATNLSPNQTKL
IMKKSRQNSKAPKAIKVQHQPKKTLITCFKCKKEGHHVKDCTLKKEEKSMSKIQEKKKMAHVKSSSMEHNAFVCSNKVDD
QATLPKNKTRRSKRKCYECKEKGHEIDSCPNKKSEGLSSSTKRFFSKVASKMQEKKANKNKSRLCYTCREKGHLSMDCPM
GNTPKLNSSINSNMLRRPKNDTCTRKVIGSPSASIKAIWVPKSLVTNHDGPNIAWVPNCA
>Copia-114_BRa#LTR/Copia 90-4208  [Brassica rapa]
MAAPPANLDRAYGVTNIKHHIPLVLDLNDHNYDAWRELFYLHCQSFDASGHLDGTLQPADDNDTAWQKKDGLIKLWLYGT
LSKDLFRSTFKSGGTAREIWIRIENFFRNNKEARAIQLDNELRSKELGDLTIHAYCQEIKSVADLLSNVDAPVTDRTLVT
YMLNGLSPKYDNIINVIIHRQPFPSFDDARNMLMLEEDRLKRSNKQSLHHKETSSSDKVLTASVSNNDHKSSPSQHQHQQ
SQRSNQNRGRGRNNRGRGRGYYHQRPPTQQWNAPFWTNGYQMWPQQPQYTPWMQGAQQNQLQQGLLGPRPVLPAPAPQQQ
AHNISGQKYEPTMDFATAFNTMTLVDPSDSQWYMDSGATAHLSNSSGNLKSTFDISTGKIVTVANGSTLPIQKAGFVSFP
TKSRSLSLNNVLVTPSIIKNLVSVRKFTRDNACSIEFDPFGFSVKDLMSKRTILRSDSTGDLYPVFPSQNKSLNNHSALS
ATTSNIWHCRLAHPSNQLLNSLLFSSALPYNKRDKFGLCNACQLGKQIKQPFSPSISTVTAPFEIIHSDLWTSPVQSLSG
IKYYILFLDEYSHFLWVYPLRSKADVFAKFQHFVAYIKTQFSSSIKSLQCDNGSEFNNNKFHSYFAANGINFRFSCPYTS
QQNGKSERMIRTINNGIRTLLFQAQLPPTFWVEALHTVVHIQNILPSKAIQNLTPFYKLFTKNPKYNHLRTFGCLCYPNQ
NNNHKPKLSPRSSACIFLGYPQNHRGYRCFDLSTKKIIISRHVHFDEQSFPYKETQTKLSSSYDFFDDETEPSPLFRAIL
QNGSPQIPLPPEIPTVSTAPTQAVPQATEAPRHTMTTRSRHGISKPKKILSLLTETKSPLPKSHLAALKDPNWNPSMFDE
YDAIIKSGTFELVPRPPNANVVRSMWLHKHKYNADGTFKKHKSRLVANGKSQEEGIDFTETFSPVVKPATIRTVLHLALA
QSWPINQLDVQNAFLHGTLEETVYMFQPPGFVDPTKPKHVCKLKRSIYGLKQAPRAWNARFVSFITSNAFIQSKSDASLF
IYNKGKDRAYLLLYVDDIIVTANTNVLRDGIIASLKNEFPMTDEGQINSFLGISAIFNDKGLFLNQTSYAKEIIERAGMK
DCKPCKTPVDVQSKLSDKDGAPLTNPTEYRSLAGALQYLTFTRPDISYAVQQICLFMHDPREPHMKALRRILRYVQGSTH
HGLQLLKKQKMALIAYSDADWAGCPSTRRSTSGYCVFLGDNLISWSAKRQSTVSRSSAEAEYKGVANAVAEICSLRNLLL
EMDCPLTTASIVYCDNISAVYLSSNPVQHQRTKHIEIDIHFVREKVQMGQVRVIHVPSSLQYADIFTKGLPSTLFYNFRS
SLGVSTPDDQTAG
>Copia-136_AA#LTR/Copia 98-3981 via tfasty with Copia-135_AA, 1 frameshift. [Aedes aegypti]
MEGSKISIVKLNNSNYAVWKFKAEMLLTREDTWKYIEDQAPEPMTDEWKGGDRKARATIALLVEDQQHALIRDTKTAKEA
WENLQKHHQKTSLCSKVAVLKRICNKTYKDGDDMQNHLFELEELFGKLSCAGLDLGEPLMVALVLRSLPDSFDTLATALE
SRSDDDLKLELVKSKLLDEVAKRDHGSADSAMKASFLKKKKPLVCHFCKKTGHKQKECKLYAKEAESEKGRSPKARTARS
EDAVTFALMAGVQANSGEWIVDSGASRHMCGERGFFEDLEESAVKSVSLADGKNAKVEGVGSGRLLCYHDNGKTTTVTLG
NVLFVPSLEINLLSVPKLVEKGAAVTFDEVGCRILVGGQLAAAAIKTGGLYKVRTSKEVLMAAKDHHNVDCQHVWHRRFG
HRDPNALGEMVQKDLVNGLKVYDCGVREGCDCCQKAKMSRKPFPKSVERKSTAVLDLVHTDVCGPVENVSVSGCRYFMTI
IDDYSRFCVLYLLRKKEDVPEKIMEYVAMMKTQFGRPPKIVRSDQGGEYTGSALRAFYKREGIRAQFTASYSPQQNGVAE
RKNRYLVEMSRCMLFDANLPECYWAEAVSTAVYLQNILPSKSIPTTPFELWHGRKPDVTHLKVFGSAAHVHVPKQKRKKL
SPTSTKLTFVGYSPDHKAYRFLDRSTRRVIISRDANFVEEERLAQAENVNRHHEAENVVDFELGIKPTAIEVTPAVNSEP
LDASDMDEDLLDDENCDYDTADESTLNDEAAATPRRSNRQSKGIPPVRYRETIGMVLDSIAEPRSYEEALASPESEYWKT
AMDEEFRSLTENDTWEITTLPAGRKKVGCKWVFKRKEDESGDVVRYKARLVAQGYSQKFGTDYDEVFAPVAKQVTMRSLL
TVAAERNLVVKHVDIKTAYLYGKLDEEIFMKQPPGYETGNPAGVCRLKRSLYGLKQAARVWNRTIDDVFKRAGFLQSSAD
VCLYVRTRNGQQAFILIYVDDILVACSSEVEFVEIVAHLQKCFKLTVLGDIKHFVGIKVTKHQNGYLINQQGYITKLAAR
FGQTDAKGSKIPMDPGYQQKEEDSAVLSNSDQYQSLVGGLLYIAVNSRPDISISASILGRSVSQPRVRDWTEAKRVLRYL
YSTRNHQLQLAANGKGLEVYCDADWAGDTKDRKSTSGFLIFLGGGVVSWASRKQSCVALSSTESEFIALAEACQEIQWIR
KLLKDLGKKVDHPICIREDNQSCIRQVENEKVDQRSKHVDTKYCFIKDLKNKNIISLSYCPTEDMLADMMTKPLTSVKLG
KLRIAAGIVAIDVEE
>Copia-130_SB#LTR/Copia 50-4352 via tfasty with Copia-40_SB, 4 frameshifts and 2 stopcodons. [Sorghum bicolor]
MSMVVAAGSGGSGDGARGGGEARQVYPTLTSTNYTSWCIRIQAIMEDPEEWSVVEPDPEAAVPTAEEPPKRAANDRKIKA
NLLQVIRDDILMQVAKKKTGKEVWDSLKTRFVGADRVRDARLQTLKSEFDAIQMKEDDLLDPIVAKLTTMSVKYNSLGGS
LDDAALVKKLFDIVPERFLTVVAGIEQFFDLKTMAFDEAVGRLKAFEERTRRGSSSARSEDKQVLLTQAEWEARQKTSGG
ESSGKGRKSDGGGRGRGRGRIGGRGGRGNGGDAGGDGTGKRDKNHIKCFKCHKYGHYANRCPGEKKGDEAHHARVEEAAV
LLAETEVPGPFKRLSASTVQNGIVLNEPKVMPELHLTGGRSSSGDMWYLDNGASNHMTGDRQKFKDLDSNITGKVRFGDD
STVEIEGMGTILFQGQSGDQWVLSEVYFIPKLHSNLISLGQLTEVGHKVELDDDLLEVSEKNPRRLIMKVQRSGNRLYKI
QLKTVDPTCLMVNIGDDAWLWHGRLGHVNFRSLKYLASKGMATGVPQLNHPDQVCRDCLTAKQTRFPFPKSAQWLAEEKL
ALVYVDLCGPITPVTTGGNKYFMLLVDDYSRWMKVYLLKSKDAVEFFVRYKAEVENFTGSKIKTLRSDRGGEFLAGVFAG
VCEQAGIKRQLTAPYTPQQNGVVDRRNRTVMDMARALLKSMRVPRSFWGEAVRHAVYLLNRLPTKALGSVTPFESWTGRK
PSLxHLRMFGCTAHAKNSAPHLKKLDDRSKALVYFGVEEGSKAHRLYDPDTKKIIVSRDVILEESEMWEWGLVSDGNNSV
EFIVEGESDSDTLSSGEVNLGGEQPGQTEPVYTETTSADSSIVVLPDLPQSPVAESIQTGSQSAPAAVNLSTPQQSLFGG
NISTPGSGDSSEPMRFRNLSEIYDETSEVELQEPESETENSDAEALLVDSGEPTCYREAAGHQEWLEAMKKEMESIEKNR
TWELVKLPVGKKPIGLKWVYKLKKNTEGEVVKHKARLVAKGYVFAPVARLDTVRFFLALAANLGWRVHHLDVKFAFLHGD
LEEEVYVSQPEGFVVKGKEHCVLRLSKALYGLKQAPRAWNVKLDNSLKKLGFSRCLSEQAVYTRGEGPDAVILGVYVDDL
IVTGGNPTKIKEFKDEMMSEFEMTDLGLLSHYLGIEVDQKDDYITVKQTSYAKKVLGQFGMSGCNSTKTPMDPGSKLDAD
KGGEPVDSTEYRRMIGCLRYLLHTRPDLSYSVGLASRFMERPTVMHVKAExQILRYLQGTLEHGLVYVQGGDAGQLVGYN
DSDHGSDLVNRRSTGGMAFYLNENLITWNSYKQKTVSLSSCEAEFMAATAAAQQALWLRSLFSEVMKEKPKAVTLFVDNN
SAIALMKNAVFHGRSKHIDIKYHFIRECIERGEIMVKRVGTNEQKADALTKPLPGGKLTVMNHLLGMRELRSCQA
>HOBS#LTR/Copia 7-4497  [Ustilago maydis]
MSPINDQDLAFSSMRVGLPKRLMSSEDYFEWATSMQNVLSCKNANLWFIIEGRLVKPEEHLGEGDLKEVKLGNKFPTKDI
AEYYRADVEARSILLNSLGPAQQALVDTSTTARKVWEKLRENYAQNVAQQIASLEAQLANLYQGDDKINVYSYKLETICR
KLDHVDAPVSGLRKLRTFLRGLGPQHDVWRKIFYFNTRLFFQKEGDSDETANKKALEDYEIAVSTIMAEEAEQKSFRRQY
PARAMQAQSQPVKKGKDKFCTNCKRDNHNLEDCFMEGGPKHKDRTEKQKQKKTKKVTGNLAQVDSDEMNLCLHVSTPDDN
VAPQNETWIIDSGASRHMTGDKTLFSTYGPSPVQEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNN
LFSTPQVQRLGGSINFTKKTVEIFDKKGRLALRGKRRGDVNYLLVEGTTTAVAKLVTSEKALDQAKLWHQRLGHLHMQAT
LKTASLTDGMNLKAMSGPSVGNNCETCIKSKHRHAPIKSRGPKTTRPLELVHMDLAGPLPEGLSKEKYYLLMVDDCTRYC
FGAALIYKSSAFQAFRTIDRWTQTQLGKRICRVRTDNGGEFLSREFSNYLNHRGIGREVTPRFTPQSNGLVERTNQIVKD
YIRCMLEEANLTTQYWPFAFSHGLKLRNMSATSTDSSKTPHEGMHGKRQDLQGLRVFGCKAWARVPDELRKSLDPKSVEC
IHLGHVSNNHPYIYRLMDVETGQIFTSRHVIFRENERIRRKSEAPFEELSDDETGTTGNNLPRPGLPAPVRSSLNIPRTS
PSSEEPSQPVGATNYPHLASIEEAQLADTTESGDSLESPTQQLVPSAESTDDEFHEPINLIPSRRRPQDIRGRDSPSRHQ
EIDDESDDSLALLPTPHQTVGGDTTTVGDTRTVGDKNNANESTGDESRYNLRARPHRLGDYARHVTTNLSKPPATLKQAR
MRADWPLWEGAIQAELKSHESNKTWTLVDHPQNKATNVVSCKWVFAIKKKADGSLDKYKARLVARGFTQRYGYDYDETFS
PVVKATTLRILIGLAAAFDWKIVHWDAVTAFLNGRLSAEVYMTMPPGHEVPGKVCFLNKAIYGLKQAGREWYLFATKVLE
QLGFTKLQEDHCLFHSKKAGRQILLALYVDDLVAASPKASELAWLHTEIQTHFKITDQGDLSSVLNVSVSKSTNSTSLGQ
PGYIQKILDRFQMLEAKPAFTPLPATGIAHPENPEHCSVADKELFQQLVGSVNYLACYTRPDVAYAVQALSRYLAQPTIH
ALSAGKHLLRYLKTTQDYRLRFPKLASGRNLTLEVFTDADFANQKAIYSPNQELTTKNKIVIPVDTTNTPRKSVTGMIFL
MNGSPISWLSKQQPIIATSTQMAEYIAAAEGAKEALWIRSLFHSLQLRGKEAIPHYIDNQAAIQLCKNPVLHKATKHIDI
IYHKIRELAAVGVINIEYTESGEQRADALTKTLNRQQIEKFCKEIGLKDRSNEKSSQ
>INGA_HV_pol#LTR/Copia 2550-6041 [Hordeum vulgare]
KDPLKNGYLKPSLDLLQEFASGGVSWLLDSGATNHMTGSKDLVVDVHPSPSMPTHVQFADASSSKVLGFGKVVVSQDLSI
EKVMLVESLAYNLLSIRQLAIMGFSTFFNIDTVVLLRSKTLKVAYVGHVENGLYVVNFSKRPTKTATCLMAKVDVGWLWH
RRLAHVNMRSLQSLLTGDHVRGLTNVSFAKDRVCSACIEGKIHETAHRPITLIYTKRPLELLHMDLFGPPTFDSLGGRKY
CLVIVDDYSRYTWVYFFKRKSETQQTVINFANEAQRQHESKILMIRSDNGTEFKNYTLDEFLGDEGIKHQYSAPYTPQQN
GVAERKNRTLIDAARTMMAEFKSPYNFWAEAINTACHASNRLYIRKGLNKTPYEILTGNKPNLKYFRVFGCKCFILKKGA
RLAKFDSRAHEGIFVGYATNSHAYRVLNKSTGLIEETCNVEFDENNGSQVEQSGLCDIGDEIPPEAIRRMGIGQILPIEE
PLMAEGEGQCSTQVEPSPPQAPHASDEQRDDSQQVDQALGQDQLPNNGDMPTQALPQDLEPTRDQDQEQPLIQDQTSEPA
QVEGQSDQETVSQFPSGAPTTGSRRKGKQKIQVDAPLLSNEELLERRAAKNANKLKAKSHLMKNVLGSLKRGVSTRQQLW
NYCEHHAFVSYCEPQQVQEALDDEDWLMAMHEELNNFERNQVWDLVPRPTKEHNVIGTKWIFKNKQDANGIVIRNKARLV
AQGYSQVEGIDYGETFAPVARLESIRMLLAFASHHNFKLQQMDVKSAFLNGPLNELVYVKQPPGFEHPKLPNHVYKLNKA
LYGLKQAPRAWYEYLTELLQDRGFEIGKIDPTLFTKRVKGDLFICQLYVDDIIFGSSNISFNEEFAALMTEKFEMSMMGE
LKFFLGFEIKQGLEGTFIKQAKYTQDMLKRSELKDVKPVKFPMPTRCKLDSDPNGKGVDQKVYRSMIGSLLYLCASRPDI
MLSVGICARFQSAPKESHYMAVKRIFRYLAHTPNFGLWYPKGANFNLVGYSDSDWAGDCVERKSTSGGCQFLGRSLVSWS
SKKQNCVSLSSTEAEYVAAASCCAQLLWMRQTLKDYGVTCDKVPLLCDNQSAIKISLNPVQHSKTKHIDIRHHFIREHIK
LGDIEVHFIHTEEQLADIFTKPLDEARFRELRHELNIIDSSNVD
>INAV_HV#LTR/Copia 167-4757 Wised via estwise with ZRSiTERTOOT0016 protein [Hordeum vulgare]
MGYLDGTMAEPPAVLTTETDVAGKKEISSTPNPAHVLWYTQDQQVLTFLLASLSRDVLLQVHSLASATGVWTAIQQMFAS
HSRARHIQLRGQLGNTKKGDSPVAIXFTKMKGFADEMAAAGKPLDDDELVSYILQGLDSDYXPYVAALSSRPEADQKIGL
TELFSLLNTAEARIDAQNGSNTNSFSINLASKGGSRNNNDTRPSGPGGGNPAAYRGAGGGFFPNTLVAPPPSGGRDETCQ
ICKRQGHATWHCFKRYDKNFNPPPKRQGGGGGNNSGGGGNSSGGNTKSANTVPAAYDVDTNWYLDTGAMDHVTGELEKLA
MHDXYTGPEQIHIASGQGMEIKHVGHSLLPTPHKPLHLNNILHVPKSKNLLSGSQLTKDNDAYLVVYPEFFSIHDQETGG
TILHGPSKNGLYPIAAGQPGAHGRHMLGAIKPSTSRWHRRLGHPSFPVVQQILRNHSLPVSNKVDHHLVCDACQMAKSHQ
LPYSRSTSVSQAPLELIYSDVWGPGPLSVGRQKYYVSFIDDFSKFSWIYLIKHKSDVFQKFHIFQALVERLFARKIIAMQ
TDWGGGGEYQKLNQFFQKLGITHHVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDETFSTAVYLINRVPSRV
IHNQTPLERLFGLTPNYTFLRIFGCAVWPNLRPFNKHKLEYRSKQCVFIGYNYLHKGYKCLDVSTGRVYVSQDVIFDEHI
FPFASLHPNAGAQLRAELVLLPPTLLNLSSPLTPSAAPNDPMAISTIYAPTSANSVQDSAGISHDFMQPNVSTDLVATEN
PGLHASESATAAPGAGDPPLQASGSAAAAPGSSPGFVHQPAASVGRSPASTSDPARQPDASAARPPVSDPVRPTTVATAL
FPASDXGAVPPGDSPAAARSPNRALDRPRSPPCGGPALSPALDTGDLPRRGDPLQAPTSPSHATSAVPHATSASPAVSSR
VSSDTVSSDSALPRRVQHNMQPMQPAPPPPRAHTRSQSGILKPKVHTDGCIRXGSFCATGEPENLKEAIADPKWKAAMDE
EFGALLSNNTWHLVPPRPEQNIIDCKWVYKVKRHSDGTIDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRLILSIVV
SRNWSMRQFDVKNTFLHGVLEEDVFMRQPPGYKSSQSPTFVCKLDKAIYGLKQAPRAWYSRLSSKLQSLEFHPSQANTSL
FFYSRHGVTIFMLIYVDDIIVTSSSAHAVDALLKDLRMDFALKDLGTLHYFLGIEVKPIRDGIVLSQGKYLVDLLTRMNM
KGCKPVSTPLPTAEKLSLYDGEPLCDEDSTKYISIVGALQYVTLTRPDISFSVNKVCQFLHAPTTVHWSLVKRIIRYLQG
TMHHGLRISKTDSMLVSAFSDADWAGCPDDRRSTXVFVVFLGSNLVSWIARKQPTVSRSSTEAEYKALTNATAEVIWVQT
LLTELGVPHPRAASLWCDNLGATYLSANPIFHARTKHIEVDYHFIRERVANKLLNIRFIPTGDQVADGFTKPLTAQQLGV
FRHNLNLGSCD
>Copia-129_SB#LTR/Copia 1342-5440 via tfasty with OSTONOR1, 3 frameshifts and 2 stopcodons. [Sorghum bicolor]
IANIPLLNGTNHRVWREKYELELALNEIDYATTSPCPIVPEEPVRHENESDADFATRKRDHADIRMKYDIDHRRWVQSNR
KCLLVARATIEESIWGLIPECVTAKEYLEHVKNQFTGSTKAKANSLIKQLVTEKYTGGGIKEHILKMNATASKLKEMNLK
EDELLIHLIFASLPKEYEAFVVNYNIQPEKWNLETLMAMCAQEEERLKSSQGDSAHFVRDNKRRTSMARNHKGNLSGISL
SPPNKGKETQNPENQQNQQNQQNQPHNPYGSAEMDQCKYCFKRGHYKRDCLDFLKSLMKRGINGTRTLQRGERTIKVANG
VQANVEANGDLFLELHNGFVLKLKEVLYVPFLRQNLISVSKLDDDRIDCHFGDGKCKILDNDECIGLAFRQDKLYLLSLA
DNVNDVCDETYExFPVYKCNKKRKRAENTSSKLWHCRLGHISRGRIERLVKESILLHLEFSDLEQCVDCIKGKYVKKIKK
DAKRSIGTLELIHTDICGPFPVKSVDGFDSFITFTDDYSRFGYIYPIKERSEALDKFKIFKAEVENQHNKKIKIVRSDRG
GEYYGRHTPYGQVPRPFARFLQENGIVAQYSTPGEPQQNGVAKRRNRTLMDMVRSMISYSTLPISLWMEALKTAIYILNR
VPSKSVPKTPYELWTGREPSLNHLHVWGCPAEAKVFNPNIGKLDPKTVSCHFIGYPERSKGYHFYCPNRHTKIVETRHAV
FLEDDMIRGSKVAREISLEEKRVFVPTPIDEEPFFTLPVAAVAAPTVQATVVPTPVVSSPMVTINEPEEPVIQEHIEPIV
IHEEEQPQPIVEQVLEVPRRSQRIRRSHISDDYEIYETEEFHMGNDPTSFEEAMRSDHSSKWLKAMEDEMKSMSANKVWD
LQEIPKGAKTVGCKWVYKTKYDSQGNVERFKARLVAKGFTQREGIDYNETFSPVSCKDSFRIIMALVAHYDLELHQMDVK
TAFLNGDLEENVYMAQPKGFVVEGKENMGCHLKKSIYGLKQASRxWYLKFDEMIKRFGFKENVEDNCVYAKFKNGKYIFL
ILYVDDILLASSDMNLLMETKKFLSSNFDMKDLGEASFVLGIEIHRDRRKGVLGLSQKAYIEKVLKKFSMHACSPSPAPI
VKGDRFGEHQCPKNEYEINQMKAVPYASAVGSLQYAQVCTGPDLAYVTGLLGRYQKNPGFGHWKLVKKVLRYLQGTKGLM
LTYRRSDSLQIEGYSDSDYAGDERKSTSGYIFTLAGGAISWKSSKQTVIASSTMYAEFVACYEATGQVNWLKKFIPGLKV
IDSINEPMRLYCDNNPAIQYAHNNRSSGAAKHIDIKYYVVKDKVRDHIINLEHISIERMLADLLTKGLPPNVFREHVAGT
GLRESL
>Copia-121_AA#LTR/Copia 8-3929  [Aedes aegypti]
MGSSKEGIPQLTGPNYENWRFRVKLHMDAVEVSSVLSEPAPAVGDAGRAKWEQTDRKAKSVLVGFVADEILEVVREKETA
SEMWKALEETFAKRSVSSQTLLRKQLARLRKKEGTSMRAHFNVFDDLVRQLKSAGAKLEEGDLVCQLFLTLPDSYDPLVT
ALENLAEKDLKLETVKQRLLAEESKREDRLDDSSEDNGAAFVGGKKKNQKKFTGKCHRCGKLGHMKKDCRSKKLEGNANA
AVGSKAVAFMANGDQTKSEAGKIHFCVDSGCSDHLVNDAKHLRSMRKLKDPFVIDVAENDVTLVGKFAGDIKGMSNKGIE
FQIKNVVLLPDLRENLLSVKKLSQAGIDVLFTGRGGQDRAEFKKNGELIGVAYLRGNLYQLELDVGSVANISVAGMSKLW
HRRMGHASQQALNTLVKHEMATGFTKKLETIGFCDTCVMAKQCRESFDGVRERATRPLERVHSDVCGPIDPPAWDGSRYF
VSFIDDWTHFAVIYPIKRKSEVYRCFKEYEAMATTQWQTRICKFTVDQGREFFSNEQRSYYKKRGIQVQPTVAYSPQQNG
VAERFNRTLVEKVRSMLIDSKAPKNLWSEAALTATYLLNRCPTVAVPENVTPAERWTNAKPNLDKIRIFGCKAMAWIPSQ
QRKKLDPKSRETVMIGYAPNGYRLWDRASRKIIIARDVKFNEECFPYAEQTDESSQVPLVVPTLYEPEGELLNNPGEEEP
HTDVVDHESDEETIFEEVEEEANPGALPSQHRGDGCSESNTRRSERERRLPGKFFDFLTGFRAISAADNSDSSDPPSSYE
EIDGRNDRDCWLAAVRDELRSMDTNQVWRLVKRPSGVKPLQPKWVFCVKEDADGNVVRHKARLVVKGFLQKSGIDYQETY
APVAKLTTIRVALAVALQRGMVIHQMDVQTAFLHGELQETIYMAIPEGVEADAETVCLLKKSLYGLKQAPKCWNEKLNQV
LLKLGFKRSKHDYCVYTRIDERGNDDVYIVIYVDDLLIMGVRAKTVDDIKKKLSQFFKMTDCGELQHFLGMKIAYDRVLG
TMCLSQEASIEKVLKKFGMDDCNPTKTPMEKGLQLTRSNTGMIGEPYRELLGSLMYIMMSTRPDVCFPVGFLGRFQQQPE
QQHWTALKRVVRYMKGTKNICLEYSRNKEAEPLVGFADADWATDTVDRKSVSGFLFQVYGNTISWSSKKQTTVATSSSEA
EYIALSAGVAESIWISGLLTDLGVKMTKPVTIYEDNRGCIGMAQNLECKRAKHIDIKHHFIRDHIAAGRIRVEPVCTDRQ
LADIFTKALDIARFENLRRTIGLHNREG
>Copia-115_AA#LTR/Copia 25-3985  [Aedes aegypti]
MGPSMKEGSGIPQLTGPNYENWKFRVKLYLDAAEVSSVLKAEAPAADHATRPKWDQLDRKAKSLLVGFLSDECLEVVREK
DTAWSMWKALEETFAKRSVTSQTLLRKQLARLRMTEGSSMRNHFVAFDDLVRQLKSAGAKLEESDLVSQLFLTLPDSFDP
LVTALENLDEANLTLETVKQRLLAEESKRIDRQDYASDDKGAAFVGGKKNERKKVIREFTGRCHRCKKTGHMKKDCPWKK
SDGNARYAVGNGKAVAFMGRSDESKTSSGGKILFCVDSGCSDHLVHDASRLKSSRKLKEPFVVEVAKEGVSLVGKSTGEL
TGFSNKNVEFRMKNVIFIPDLRENLLSVKKLSQAGIDVLFTGRGGIERAEFKRNGEVIGVAYLRGNLYQLELEVGYVGQA
NITAAEASRLWHRRLGHASQQAMETIAKHEMATGFTNKVDRIGFCDTCVMGKQCREPFDGVRERATRPLERIHSDVCGPI
DPPAWDGSRFFVSFIDDWTHFAMIYPIKRKSEVFSCFKQYEALVTAHWETKISKLTVDQGREYFSNEQKRYYQKRGIQVQ
PTVAYSPQQNGVAERFNRTLVEKVRSMLIDSQMPKRMWSEAAMAATYILNRSPTTALDGKVTPVEMWTKTKPDLSKLRIF
GCKAMMWVPNQLRKKLDPKSREAIMIGYAPNGYRLWDRSSRKVIIARDVKFDEDSFPLACNDAEAKQPLVIRTFYEPEGE
PLDTTRADEVEVEEANDSNSEYGEADSDEQMSDTSNPGALPSQERREDCLESTTRRSERERKLPGKLLDFFTGFRASTAS
EISASSDPPSTYKEIEHREDRDAWLAAISDELQSMEANNVWKFVPCPVGVKLLQSKWVFCVKEDADGNVVRHKARLVVKG
FLQKPGIDYHETYAPVAKLTTIRVVLAVALQKGYYIHQTDVKTAFLHGELKENIFMAVPDGVQAAPGTVCQLRKSLYGLK
QSPRCWNEKLNEVLLKLGFKRSQHDYCVYTRIDERGSDVIYVILYVDDLLIVGAKLNTIEDVKKKLSQHFKMTDCGEAKH
FLGMKISYDRKQGRMELSQEASIKKILRNFSMEDCNTTKTPMEKGLQLFQATSEXTEAPYRELLGSLMYIMMATRPDICF
PVGYLGRFQQRPDASRWTALKRVVRFLKGTMQTSLKFSRNEQMEPLVGYADADWATDQQDRKSVSGFLFQIFGNAVCWSS
KKQTTVATSSSEAEYVALGSGVTEAIWLAGLLDDLGIRGTTPVTIYEDNRGCIGMAKNLESKRAKHIDIKHHFIRDHVAA
GNVKVEPIGTENQLADIFTKSLDVGRFQKLCRTIGLHDREG
>Copia-121_SB#LTR/Copia 107-4352 via tfasty with Copia-21_SB, 1 frameshift and 2 stopcodons. [Sorghum bicolor]
MGTSGEKETMDRAFTQAANNLMWPMLTRTNYQEWSSHVQCNLEGMYLWDAIEPGKDPERRRDRLALGAMLRGVPQEMHSM
LLNKKIVKEAWEAIKTMRLGADRVKEVNAQKLLGEFEAISFKPGETIDDFAIRITKLATDLKGLGETSVDDSRVVKKFLR
VVPPRYSQVAVAIEMVKNLKELTIEELIAHLRAAEERFEPSVDQVADKMPKLLLTEEEWAARSKNRAGSDSPSGSGNKGK
NRYVKKEKPRARADGDGRDSGRKLTSMGTPRRKGRCRKCNIYGHFEKECKTKMDGEERHEAAHHVAGDQEGALLVAQVCD
VVRAATSRAQRVFLSQERVFPAEHEEGAWVLDTGATNHMTGCREALASLDDSVRGAVRFGDGSMVEIHGLGAVTLAGKNS
DHRVLTEVYYIPSLKCNIISLGQLEERGCRVEIDRGVMTVFERSKQGTDQLGVLIRAERRNRLYTLKVKVASPVCLLSKM
DDEAWLWHARYGHLNFISLRDLGTKRMVEGMPLIKRAEQVCDGCALGKQHRTPFPRASEYRANAVLELVHGDLCGQITPP
TPGGKAYFLLIVDDHSRFMWLELLATKDEALTYFKKFKTAAEVESGRRLKALRTDRGGEFNSQLFSAYCSEQGIRHNLTT
AYTPQQNGVVERxNQTVVEMARSMLKSMNVPGQFWGEAVKTAVYLLNRSPTKSLEGKTPFEMWYGRKPSVRHLRTFGCKV
FAKRTGPGITKLADRSTPGVFLGYEPGTKGYRVYDPVNNKLLVTRDVLFDEKSQWNWGVKTSETGDRDRAALLTPDFIVE
LELADDFQAVVGAADSEDAEPAVAVPEHVSPGTAIPSGGGAFEGSPHTPSSTTGPTHQIQWTTPPTDASVGTDEAPRRYR
TLPDLFDSTEEIQNFEYSGLCLMATEEPATVEDALAEDCWREAMEAEMKAIQDNETWVVSDLPPNQKAIGLKWVYKVKKN
PEGRIVKHKARLVAKGYAQRQGVDFEEVFAPVARIETVRVVLALAAQSGWEVHHMDVKSAFLNGDLTETVFVQQPPGFNV
GSKGKVLRLKKALYGLKQAPRAxNAKLDKELISLGFTRSKLEHAVYRRQNKNSFLLVGVYVDDLIISGPNVQQFKVEMKK
RFSMSDLGLLSYYLGIEVKQGRDGITLSQNAYAMKILESAGMMKCNPCGTPMEARLKLSKKCEDEVIEPTAYRSVIGSLR
YLVNTRPDIAFAVGVVSRFMEAPTKDHWVAVKHILRYLKGTIGYGCKYGRDTELKPFLLGFSDSDFAGDSEDRKSTTGVA
YFLGKNLVTWASQKQKIVALSSCEAEYVAGATAACQGIWLSRLVGELMGIGETPVKLLMDNMSAIALSKNPVHHDRSKHI
DTKYHFLLECIEEGKVEVDHVGTANQLADIFTKSLGRVRFVELRRALGVVDVQQV
>Copia-128_SB#LTR/Copia 54-5461 via tfasty with Copia1_OS, 3 frameshifts and 5 stopcodons. [Sorghum bicolor]
MATNEKFDVRAPFFDGIDYDYWKARMTNYLKSKSLKLxKITQNATYVIPAEEPTDAAEIGLLETNHRVVAILQASICKTE
YDRVSSEDLAYQIWEKLRKYHEGSNTVKNRKFEIHRKEFDAFCQLPSESIDDMFARFQVIVNKMKAMNSDMPYDDHARAL
RLLHSLNDEWDMKVEAIVESAGYETLTTDELYSKLKSKEIKIVSKRKLKNPTASSSSDVPMALISGNKTNSNANPNVSSF
ALSSLCHVADEELEVLDDDQLVLLSNKFKRVYDNRRNRRRSDGYYNCGERGHFAADCPNKMKSSEQGNSSSRRQEQFREK
KKKKKKKKKEKQWKKGGQKYSDKQVAKAAHVLLSSFENYVSDGSSDSSDSYSEDETPKKKTDGPCFITDADNNGGICTMA
LEDDVEADNNDETSDDEVDTTIEQRITDLTKIVHKQNKVLAKLKADYDKTCAELATLKNATSTPVEPGECEECSIHMISL
SELQTKYASIVDDRDKLNVELNELRSRSNLLGACVSCPLLKVDLDNALCRVKNLEKHTCPVLPPCLTCPNFVAENNDLRA
KLDNLEEENKHLRTILGWCSIREPQIGMSIAQIKRGERFGPGYDLKHVFGEKSGPPVDDKNPPLAKYTGPPPRKGSSVTS
DGLLVETSRSAPKRQVWVPKPKYFECVQNAKPSGFSCDNSAKHIFVASGSMLKPPSRQHIELYHCDFCDRDGHLYEFCFR
RMRAERREQYPARGTHDRRVFRREQYPVRGTHDRPILRRxPAGCSSGFRSRTHASAPRRNDRPCFRPPGPRCSFESFDFA
NASFEQVAQHWFSLHYPNPSVESLAHSRSRCxLQVGGEEDIWIMDSGCSRHMTGDDKWFSSLTPTSIKENITFGDKSQGK
VMAHGCIKVTDKYTLKDVALVKNLHYNLLSVSQLLEDDFEVRFKKGNSRVLDSTGNLVCKISPFRRIFKADFSRSFGKTR
CLVAHGSPLIWKWHRRLGHLSFDLLCRLSSLDLIDGLPKLKFEKDLICAPCKHGKMVAASHAPVTQVMTRRPGELLHMDT
VGPARVRSAGGKWYVLVVVDDFSRFSWVFFLESKDEAFSRVHDLVLKLKNELSINAVRAIRSDNGTEFKNSRMKAFCSEx
GLDHQFSSHYVPPQNGVVERKNRTLVEMARTMLDEHKTPRRFWAEAINTACYVANRIFLRAFLGKTSYELRFGRPPKVSH
FRVFGCKCFILKKGNLDKFESRSSDGLFLGYALQGRAYRVLNLATNRIEETCEVTFDETIPCFSSVFECAGDDEIGQNIF
EEEKEEYGCDDDDDDAQPVAQEEPDAQAEQEPSTSLEDGPSPTRTSTAEPAASPTVDHVPAAVEGEVISERTAPRHIQDR
HPPKNIIGNLDERTTRNRGMKNKNYCVFAHIAFVASFEPRDVGHALSDSNWVNAMHEELENFERNQVWVLVDPPPSCKPI
GSKWVFKNKQGEDGHVVRNKARLVAQGFSQKEGIDYGETFAPVARFEAIRILLAFAASRGYKLYQMDVKSAFLNGFIEEE
VYVKQPPGFEHPIFPDRVFKLQKALYGLKQAPRAWYARLKTFLLKNGFKMGSVDKTLFLLRQGNDTLIVQIYVDDIIFGG
SSHALVKKFADVMSKEFEMSMMGELNFFLGLQIKQTSEGTFVHQGKYTKDVLKKFAMDDAKPISTPMPTSAALDADEDGE
PMDQKEYRSMIGSLLYLTATRPDIHFAVCMCARFxASPRSSHRQAVKRIMSTSAISVAKNPVLHSKTKHIEVRHHFLRDH
VEKGAIELKYIDTSQQIADILTKPLDQTTFARLRGEFGVCYPF
>Copia-125_SB#LTR/Copia 44-4488 via tfasty with Copia-54_SB, 3 frameshifts and 4 stopcodons. [Sorghum bicolor]
MAQSSDVAKLAFGFLPPVTEKLTRGNYGMWHAQVSHTLKGARLATHIQAGAMPPAAFVEPDPPVDTDGKKKAPVPNPEYE
EWIAKDSQVLSYLFSSLSKEIFSxVSSVASAAALWVAIQELHASxCRARVITTRMALTTASKGTSTMAEYFTKIKNLADE
MASAGRKLEDEEIVSYVLTGLREDFDFVVSAVTARVEPISVHELYAQLLSHEQRKEARDGGSNFSVNTATKGGRGGGSHN
FNRGGRGNRCGFNRGKPGRGGGGGRGSNFQPGVFCQVCEKEGHSAFRCYKRFDQNFTPASQKSASSATTSSYGIDTNWYV
DSGATDHVTSELDKLTVRDKYGGHDQVHSASGAGMEINHIGSSILCTPSSTIHLRKILHVPEASKNLLSVHRLARDNDAF
LEFYPYRFFVKEQGTRKVIFQGPCEGGLYPLKPSSSQSRPNKSVLAATIKPTSTLWHHRLGHASTSVVRQVLTCHRIPFI
SDFNENLVCDACQMGKSHQLPYPKSTSVSSRPLELVFSDVWGPAPSSVGRQQYYVSFIDDFSKFTWIYFLRHKSEVFQVF
RNFQQLVERQFDRKILTMQTNWGGEYQSLNSFFKQIGIAHHVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWD
EAFATVVFLINRLPSRVIHNETPHERLLGQPPDYSFLHTFGCACWPNLRPYNDRKLAFQSKQCVFLGYSSLHKGFKCLEP
SVGRVYISRDVVFDESVFPFSRLNPNAGARLRSKLSVLPDVLLNPTADFEDAILLDxCEDFPISTNPGISPSSHDVPGTN
VAGNDDGSGANGAANDAYSYRHFMCPTTQTATGGSYEMDAPGRSHLPRCSPGSAPAxHLIGLDAPSPDAVPPDPAGSSAP
TSSPRVTVASVPQPQPDPSAAGHPAGGPSRSDPPGSSAAQAPMPRDVAPTAPTPTPPSESASTRPVTRRQHGIHKPKQYT
DGTVRWGMMATSEVGEPTTLTEALKDSRWIEDMNHEYNALLRNKTWHLVTPPKGKNIIDSKWVYKIKRKADGTIDRYKAR
LVAKGYKQRYGIDYEDTFSPVVKAATIRLVLAVVVSLGWSLRQLDVQNAFLHGVLEEEVYMRQPLGYKDPDHPSLVCKLD
KALYGLKQAPRAWYARLCNKLKQLGFVPSKGDTSLFYYHKGGIVLVYVDDIIVASSSQAATGALLKDLEQEFALKDLGEL
HYFLGIQVKQVLDGLVTSQERYATQILKRVGMSLCKPVDTPLSTTEKLSLTDGAPLGPDDSVRYRSIVGALQYLTLTRPD
ISFAVNKVCQFLHALTLTHWSAVKRILRYVKGMLHLGLKIRRSQSTMVSGYSDADWAGCVDDRRSTGGFAVFFGPNLVSW
SARKQPTVSRSSTEAEYKALANTTAEIMWIQRLLEELGVRHSPVARLWCDNVGARYLSANHVFHARTKHIEIDFHFVRER
VAQKLLDIRYIHTDDQLADGFTKPLTALKSKDFRFNLNLVDA
>Copia-7_ADe#LTR/Copia 97-4595  [Auricularia delicata]
MASSTDSGVIQRVPMLSGVDNYAIWRTKLEIEAMRLGVDDHLHDPAPTEPSAITLAADGANAAAVTKRETEIAQWKLDKK
KAASLVAQTRGNAPLSLVRSTIDTRGFTALSILTKLETRYKLTNKVMTAFTVLKKVFHTRYEDGADMQVHIDQIRDMLQS
LEDLGVTFNDQLRALILLLSLPDTNEWDVFQTPLLAPVTDANPITFAQVENALNARITRTPDVSANAVSSPSRKPAKGKS
GDKNCLYHGRCSHDTSECNDFKDAINTHKATKRDAKSSGGGGGGGGKKKDNPSAHQVAKEDATSDEEEAHVTLPAATIEK
LDVYFHGEIVAHTASENQIGKVTILDTGASATIRPHRSWFKTSTYREFDVPKRVRFGDNSFTDALGEGQVVLRTVVNKQH
FEITLSNVLFVPRFKLTLISVGSLDAKGLESQFSGGRCKVLKGTRCILTGERRRGLYHLNGTALEFRTAACPLPSPAEPE
PQAHAARTRKPKAGKTVEINLMHRRMGHLNFDALKRMVNDGRVEGVSKLSGKPKLCEHCVLGKMKRLPFPTGRQRATRPL
QLVHVDLCGPMKHPGPNGELYSMTLTDNHSGHPWTLFLQRKSQALAKYRQWKADVEAYFKEELLELELSPEFVAFMRSDN
GGEFTSKAFEAQLAADGVRHETTSPYTPQQNGVAERMNQTIVTTATTVLIESGLPPSFWVEAMRYATDLIARRPTSAADG
RSPYEVLFKRRPDVSRFRPFGCLAYMMIDKDKRTWKMGARAHRCVMLGHEPLSKDYRLFDLHSRKFVRGYHVLFNEYTMA
GHKIAPAEERLSPEQWGEQLLKLATDAPQPAQPPPPRPDAAPRRAWVEEVDNEDDIRPAHGPSPEVDMPPPAPQPPAGPV
QEAPPIPDPPPQAERRYPDRECRQADPERDVHRTQDEWRARLDEAKRNRSMRAESLDDDAIAGLAEIMKELRDDTDEFFA
GIANDSPQPHSVPRNVREARTSPDAAKWEDALRAELQSPAENDVYEVVPIPVGVKPITSKVVYHIKYDANGDVERYKSRI
VARGFVQKEGVDYEETFAPVANLDSVRIICALAAKYDLELDQMDVSTAFLNGQLDEELYLLPPDGVSIPAGHCWRLKRSL
YGLKQAGRTWNKTFDKALTGLGFISLNAETCLYVLREHGKVCFLVVYVDDLLLAATNRQYMDSVKARLSKLYKMRDLGPA
SCVLGIRITRDRSTRSIALDEEKYVETVLKRFGMQNSRPFATPMHHSARMSEDDPRDNTTLARYEIAPNCVVSYPQVVGS
LMYAMLGTRPDIAFAVGVLGRYASAPKHCHWEAAKRVLRYLRGTSTMALHFEGQDINSDLEFHGYSDADWSGDPDNSKST
SGYTFISNAGAISWSSKRQQMVALSTTESEYIGLTNAGQHLMWLRSFFAELGHPQKRPTDLRCDNESAIVLTREPQFRAR
TKHIARKYHFIRDDVVLKGQASIRYVSTHDQVADIFTKALSDDKHRKFCRAMGLRLRASG
>Copia-6_TC#LTR/Copia 60-4027 via tfasty with Copia-27_GM, 77.4% SW:3175, 2 frameshifts and 6 stopcodons. [Theobroma cacao]
MSYGFNASAPSKFTGENYSFWSVKMEAYLRAFMLWEAVETDEEPVQRRANPMIAQIKQFEEDKAKRYKALSCLHSALFDE
SFAQVMHLKSLKQVWDYLREFFGSERTRQIQAFNLTQKFEMLRIEDSENIREFSRKMMGLVNQLRLLGKEVTEERLVSKM
LMSLLEKYETKVSSLEDSKDLAQITFKELVHALEGLEQKRAFKQKSASNFALVAKAKNVKMRGNGLKDSSIDKKNKGRKS
GDTQQGDQKREFPPCKHCKKTSHTEKYYWFRPNVKCRACNQQGHVEKICKNWAEAPEKAAVVEHTDGDADKVLFMATIDE
NSSNVTAGENSRRSNVWLLDSACSHHLTSNKSLFSTLDKSFKSKVKIGDGNYLDILGVGTVDIETTSGRTSISTVHYVHT
ADHNLLSVGQLANEHYRILFKGDSCIVFDSQGKELIIVSMKNNCYPLNLANAAHLALYNELDVSEVWHQRIGHVNYNTLT
LMSFRNLVKRLPVILKPNKICQTCQFGKQTRKSFPIESRWKATKKLELVHTDLRGPMKTASLNGSRYYIIFIDDYSKFCW
IFFLKQKSEALSYFKKFKVVAENFSRQSVRTLRTDNGKEYTSTEFEQYLESCGIQHQLTIPYSPQQNGKAEKMNKTLAEM
GRCLLYQIKLLGVVWVEAVNTANYLLNGVYIRALDSKTPYEMWFDHKLDVSHLKIFGCICYATISDVKRTKFDPKSVAAV
LVGYSEVSTGYRLFDPELKNIFVSRDVIFDEGQSWNWPNSGAGQVDFTKTANVDAQRTVVDDDSDLEDESKAIRCTRSLA
DIYSICNITVTEPATFKxAxLDNNWKSAMDAEMEMISKNRTWTLVDRPVDKNIIEVKWIYRTKFNPDGFINKYKARLVVK
GYAQVYGVDYMETYAPVARHDTIRMFAALSSREGWTIYHLDVKSAFLNGILTEDIYIEQLEGYVQQGSEMKVCKLIKALY
GLKQAPRAWYTRIDEYFKNxGFMRSINESTLYAKHEHNTVELIVALYVDDLLVTRPENKYVSELKSxMKEEFDMTDLGVM
TYFLGMEVRQTTGKVILDQGKYAQDLLKKFNMSMCKAVNTPLCIGAKFSVADGAENSNGQLYRSIIGSLLYLAATKLDIM
FATSLLPRFMQNPSEVHLAAAKRILRYVRGTVNYGLVYMKxESSQLIGFSDSDWAGSLDDSKSTxGFCFSFGSVVFAWSS
KKQPMVAQSTAEAEYMACAAATNHALWLRKLLDELGFKQEKRTLINVDNLSAIAISKNPVQHGRTKHIRVKYHALRKVVK
EGEIELIHCSTSDQLADIFTKSLGRERFECLRQCLGVHQIMN
>Copia-7_BD#LTR/Copia 39-3906 via tfasty with SC-8, 1 frameshift and 1 stopcodon. 170 AA deletion ith respect to SC-8. [Brachypodium distachyon]
MSAPAQDVAGSPLRQPRHRSPSPPLRRPRHREAGRREVVVERVVKDVGGGKYPMLTRTNYAEWSLLMKVMLQAHGLWEAI
EFGADDFQEDRMALEAILHAVPLEMMASLAVKRTAKEAWEAVRTMRVGTDRVRKGKAQQLRREFETISFRDGEKVDDFAL
HLSNLVTSLATLGEPIDESQVVEKFLRVVPPRFSQLALSIETLLDISELSLEDVTGRLKAAEDRLEPPEPPREQGKLLLT
EEQWREKMKERQGGSSSRSVRSSTQRRRRPPPRKGGEGSPxGGPRNNKCLNCGHSGHWARDCRQPWRNKAFLAQAEEDDE
EPALLMAQVCTTPAPATKVQDSTAATPALVQDTTAAAPAPVQNSSAAVPEHAPLHIDEPKAKVFLGTSSYEERIKGWYLD
TGATNHMTGHSDAFAELDQTVTGTVKFGDGSVVEIKGIGTVIFAGRNGEHKALNGVYYIPRLRNSIISIGQLDESDACVL
IRRGVLRIWDQQGRLLACVRRGRNRLYKLHLEIAQPICLSTRHGDAAWRWHERFGHLNFDALEKMGRLAMARGLPQLEHV
EQLCDTCVITKHRRSPFPQQAKYRAQEPLELVHGDLCGPVTPATPGGRKYFLLLVDDATRYMWVMLLAAKNNAPDAIKRI
QAAAEVQSGRKLHVFHTDNGGEFTSTEFAAYCADEGIQRHFSAPYSPQQNGVVKRRNQTVVAMARALLKQRGMPTEFWGE
AVSTAVFLLNRAPTKALTGKTPYEAWHGRKPAVHYLRTFGCLAYVKEQGNLRKLDDRSSPAVFIGYEEGVKAYRLLDPLT
RRIRIARDVIFDEERGWDWAANGSNSGSSFDIQYICRGTVRAPSQVSCPGEDRTAPVARMESIRLLLVLAAQEGWPVHHM
DVKSAFLNGELKEEVYVKQPPGFVVTGKEGKVLRLHKALYGLRQAPRAWNAKLDCTLKEIGFKQSKHEHAIYRRNNGDAT
LLLGVYVDDLIITGSSKEAIESFKEEMKTKFQMSDLGLLSFYLGIEVQQNEDGISLCQAHYASHILQLGGMEGCNPAHTP
MEERLRLSRESTAEEVDATEYRRIVGSLCYLVHTRPDLAFAVGYVSRFIERPTEEHMMAVNRILHYVAGTTHYGLHYKRK
TKETRLVGYSDSDLAGDIDTRNSTSGTLFFLGNCLVSWQSLKQRVVALSSCEAEYVAATTAATQGIWLARLLGELHGREA
GAVELMVDSKSALALAKNPVFHERSKHIDLRYHFIIRDCLEDGSISTSYISTSDQLADILTKSLGRVKFQELRAKIGMVQ
IKSSMKSKD
>Copia-7_EPa#LTR/Copia 38-4063 via tfasty with ATCopia76, 80.5% SW:3718, 2 stopcodons. [Eutrema parvulum]
MSSSKHDLDKFNGTGDYIMWKEKLIAHLELFNLYDVINSGASQGEIVTSAEDQSxKETKIDEKDLHEKQRKARSTVVLSL
TDCDLRKVIKEKTAAGMIQLLDDLYSPKTLMSRIHLKQKLFGFVMLPSFSVEKNVDDFLKIIADLENADVTISDEDQAVM
LLMSLPQQFDGLKDTLRYNKFTLTLQEVITAIKSKELDSGYYVKASKPIVEGLFVRGRPGSNWTKPEGKKSETKNKKGKE
KSKPKKTCWFCGDEGHFKMHCPKRPSDGNRNNNHRGESSLVNNHDGERIVDMLFVEEALNITASELESRWVIDTGCFFHM
TWRKDWFINLDESKSGSVRMANDTMSKIKGIGSVKITNEDGSEVILSNVRFGPDMKRNLISPGVLEELGCSYSSENGVLR
IRKKNRVVLQGRRHQSLYFLCEKRFTQEAHVNIVRQDETHLWHSKLGHMSQRVIDLLVKRGLLDSKKISQLEFCEDCIYG
KAHRVKFNTVKHTSESVLDYIHSDLWCSPYIPKFIGGCQYFLSIIDDHSRKVWICFLRRKDETYERFNDCRIMVENQSGQ
KVKKIRTDNGLEFCNLQFDTMCKENGIVRHNIVAYTPQQNGVAERMNRTIVEKVRSMLSETGLPKTFWAEAASIAVYLIN
KTPATVIDCRIPDEVWYKSEPKYQELKIFGCIAYAHTDDGKLEPRAKRGVFLGYPAGIKGYKVWLLDEEKCVVSRNVIFK
EDQLYKDVEKEKTSLSEDTEKSEVVTLELRAEKEQFASRSDTQDVSDSESEEESAEKSLLSLENYQLARDRARREVKIPL
RFQENQMVxYAFVTTENGEPIEPDDYQGAMNDKDREKWKAAMLEEMSSLLKNLTWILVECPANVKVIGCKWVFKKKEAIP
GVEGQRYKARLVAKGYFQREGVDYNEVFAPVVKHVSIRVLLEIVAYEDMELEQLDVKTAFLHGELEETIYMRQPEGFGVK
GKEKQVCLLKKSLYGLKQSPRQWNQKFNLFMKSINFTRSDLDSCVYVKRLPNGSYIYLLLYVDDMLIASKDKSEIASLKK
QLNENFEMKDLGCAKKILGMEIYRDRGERRLELSQKSYIEKILKVFQMGESRAVKTPLGAHFQLKSATDEEIKHQSEKMR
TVPYANAVGSIMYTMIGTRPDIAYAVGMVCRFMANPKKSHWLAVKWVLRYLRGSAGTKLVFQRKEELKLTGYCDADFGSD
LDRRRSITGFVFTLGGTAVSWKSGLQKVVALSTTESEYIALTEATKEAMWLKRLLEDFGYSQKQVELFCDSQSAIALAKN
NVFHGRTKHMLVKMNFVREKIEENIVQVTKIHTKINPVDMFTKVIPVGKVDEALKLLQVCSE
>Copia-7_DWil#LTR/Copia 107-3983 via tfasty with Copia1_Dmoj, 87.7% SW:4573, 3 frameshifts. [Drosophila willistoni]
MSSMYNIEKLDDANYDTWCVLVRSVLVHQDLWSVVSGNFVEPKTDEAFETWKRQNDKAMAVLFLSISAPQLNSIKKCERA
SEIWKELEKFHRPTGPVRKVTLFKQLLNKRMAEGDSVQKHILEFSNIVENLSVIGVSLPEEFTVILLLASLPMSYENFVV
ALEARDELPSFSTIKCKLAEENERRKTNNQNDVVQAFAACSIGGERGKRRDNKSEADRRRCFKCGQPGHFAAKCAMKEEN
ENNANVRGGKNSGRCEYWKNKEGQRSFGVATNNRMDIDDWVIDSGATSHMCAHRELFNRLERNNEIIRKGNSGSKLGYTI
TLRDVLFVPGLQCNFISVGKAVSNGCTVLFNSGTAKVNDDKGINILMAKKVCGLFLCETKNQERLCVSKASDELEKWHMR
YGHLNVQSLRELQNKGMVRGLTSSITGENLDCIDCMKNKCHVKPFEKSQTRATKLLELIHSDVCGPMNKESNGGAKYFMT
MIDDLSRYIHVYPMKYKSEVAKIIKEHVTMVERQTGRKVKSIRSDNGTEYVNKELDEYLKSNGIKRQLTVPYTPQQNGVA
ERCNRTLVEMARVMLNSAGLKESFWAEAIVCAAYLRNRSPTKSVEGKTPFEVFTGHKPVVKHLKVFGCVAVALEKGPRKK
FQEKGREYIMVGYSESSKAYRLYDKKTGDVKISRDVYFIENCQTRIRENSEVTMVLDEVIDEPNNVVEGHSTEDISSEDT
GNGNLTNCVGDEAADNDVEVYEEPKRGPGRPRIVRTGLRGRPTKQYNVLNVMLATNVEVPETVQQALTGQQAEKWKTAMQ
DEYEALLRNNTWEQVKLPAGVKPIGCKWIFTLKENATGEIERYKARLVAKGCSQKYGIDYKETYSPVVRYATIRMILAMA
AEYELYVHQIDVSTAYLNGDLGEEVYMQQPEFYDDKSGGVLKLKKSLYGLKQAGRVWNTTLDAVLRKLGYEACESEPCLY
TRCAPDKTIDVIAVYVDDLLLACSDKGKMLATKQAISSEFQVVDKGPITHFLGLEIQRDGDKGAIRLSQSMHIRSLMKEL
GMEICRTVSTPLEANFQVKCDNKSCKRIDATEYQSVIGSLMYIALCSRPDILHSVCKLSQRNKDPHGEHLAAAKQVLRYL
NQTADMAITYKKTGAAITGYADADWAGDSTDRKSYTGYAFMWGGSVISWTSRKQKSVALSSTEAEYMALSDAAKEAIYIR
KLINEMKLYFKLDCITLHGDNVGALNLVKNPVYHARSKHIDVKYHHIRNSFEENLIKLEYCPTTEMIADILTKNLCKVNH
LKCTALLGLNRY
>Copia-6_PIT#LTR/Copia 5-4994 via tfasty with Copia-22_PIT, 1 frameshift. [Phytophthora infestans]
MSPNPTVTSTNQHQDLGVSTPSVGCDRSLSQSQVGELTPLAIPLAVQRSVSDGASQDFRLPGAQLSSQTSYGDRPRSITQ
PQSRPLNYGQPANIYQAHVPAGDVNPACVQEQEEDMPKIEAITKFDVGKKLSQPSEYPTWRMRVMAGLGMSRLEQLVQGN
EPLRDNMTPAQKNCWGVRRRKAQGLLVSCISDEVLLRYEDIVFRADPILLWDRIFQDFGRGPGVNTDMVMADLYARKLQS
DETVEEYIKDLLRMQRILAENNDPMHDSRVARLMLTNAMNVYPKITDDVTRRGIQPNEFTIYASRAELVNAEMTARAREQ
HGTAASGGASSGGRGLSSGRPQLQTNFTQRSGNGKQPRQRGGRYGGNRSRSVSSNSSTGSRTSIMARKKNSTGQKGHWKG
DRECKGANQQAAGNQERNQRVQAFSGGVFTNIMGGAAHQQPQSAAAGFTFDEVRHVLGEQAARQLRDELETKPPAPAVDE
EQFSPTSTPLQSPAEARGGLVSMVMGSHDDNCFLDLAPDEMEWLLDSGSQVNLCGDLSCFSYVERGVSGELKMALGQTEI
LNASGSVVMRVNNQLSGQWEPRRLDDVHYSPNAHVNLISLGYMQACGFVVNISEDQRTAWLTKNEIKLRFDQHDKLYRLR
TKRSHRLVAAVEARTNMMGLLHNRLGHVNMKTIRELAASKADFGVKINANSLSAYDCVPCITAKLKRMSYKRNPERRKHP
LEKLSVDLCSVGDETITGETMFLLVVDEATRYKWCYLLANKNDAEDKIKTLILRLNNKFKRQSRSVVTLHSDQGGEFLSG
RLKDFCEELGIQSESTNSYSPEENAIVERANGLVLPRLRAVLHAASQTDLLWGEALLHVVDTVNLLPTAALDGKSSFEAL
YDKKPTLRYLRTWGCLVHSHIPKERTSTRDKLDPRAELALFLGYSTNTKGYKLLNLKTGCVIQKRSGNVLCHERFTAAQA
YVKQLLLNTYKDGNADLPDEIPVVPIVNSLEDRLFPDAGDPLRSSVLPNAGRLDKQTELVASPEQVGEQDVPAQLSMTPS
NASKASCLKRSAAQTKTRTASRLVKRKANDNEAYTPSKNLPAVATAEPRANIIRRAKKLPAHLKEYIVGSVINSKQDIPI
PTTYKQAKKSNFWPEWEVAMNDELTSLRQHGTWKLVSRTKAKSQTVITNKWVYTVKRDAQGRIKRFKARLVIHGFKQSFG
VNYLETYAPVIRFETIRAAILYARKRGWDVYQYDVKTAFLYGRLEERIFMEIPAGSTEGLTGGEMICQLIKSLYGLKQAP
AVWNKTLHDFLVDLGFTRLDSDYGLYVKYSNDEVDMLLTVYVDDLLLMGPAALFTKVAAQLEAKFTLTSMGEAKYLLGIE
ITLDAINNKVIYSQRSHIDKLLKKFGLASSYGCWTPQATTESRAQAKNQDKPVDMPYRELVGGLQYLVSGSRPDIAHAVR
HLGKYLSCYTESHFREAQRVLRYLLQTRDYALHMDVVLGTDVCITAFTDSDYANDPDDSKSVSGYVTLLDGNVISYASRK
QGINAQSSTEAEYVAMNEGVKDILWIVDLCEELKWPAATPLLRGDNQAALYLTEKPGKHSNTKHIRNKYHLIRHMVEDGK
LKTLHVPTNDNTADIMTKPLARAKFSQFRDQLKVMPISLPSSAATAYAALATNAEECQDGVDE
>Copia-5_Pru#LTR/Copia 95-4384  [Prunus persica]
MANDKEVETSSKDGNKSEVSNPFFIHHSDHPGMVLVSKPLNGDNYGTWCRSMRISLSAKNKLGFVDGTVKKPSKKTDPDE
FSLWQRCNDMILSWILNSLDQDIADSVIYSDTAHDIWEDLKERFSQSNVPRIFQIQRDIASLTQDQMSVAAYYTRLKGLW
DELASYSDVPTCTCGAMKDHAERDERNRVMQFLMGLNDSYAAARGQILLMQPLPSIRNIYSLVSQEEKQRQLGTPHTTLE
PAAMAVRQHQGPSNSNRKPLHCTHCDRDHHTIDTCYKLHGYPPGHRLHISNRNKKGSSSSANHVQNNPTMQELKSAMPNL
SDSEYQQILTMMNDKKEPQANSAGLSYYPLPLHRWLIDSGATDHITSTSHSFTSTNNNPSIPPVVLPSGEKASIISVGNA
SLNSSLSLNNVLYVPSFKVNLMSVSKLTQGLHCSISFFPNWCILQDLATRKTIGLGKQQGGLYYLVSLASDKPSLLPPSC
NHAHASTHLWHSRLGHPSSSRLQFLAKNVLNFPFSNNACEVCPLAKQTRLPFNLSSISSSKPFSLIHCDIWGPHKIASFS
GARYFLTIVDDFTRFTWLFLMQNKSETQNLLKSFFAFVQTQFNTHVQQIRVDNGGEFSSMRRFFHEHGVIFQHTCVYTPQ
QNGVVERKHRHIIEMARALRFQANLPISFWGECVLTAIYLINRLPTTLLSKISPYEKLYHQPPSYTHLRVFGCLAYATIV
QPSHKFDPRAKRCVFLGYPFGQKAYKLFDLTTKKIFTSRDVVFHESHFPFQTLPSSSLTEPPPPVLPLPLSDLSSPPCIS
PDLLSPHPPSPSTPPDLTASFDTAAPIFPSDTTAIPAPSQPSSPSVPPAPIRHSLRHKVKPAHLHDYVCSQVTLPTLDQS
SDSLPCRTKGTRYPLSNFLSYHRYSPSHFTFIANISRPVEPNTFAEAVSNPHWQEAMQSELAALESNQTWSLTSLPPGKQ
PIGCKWVYKIKHRSDGTIERYKARLVAKGYTQTEGLDYHDTFSPTAKMVSVRCVLALAAAHHWSLHQLDVHNAFLHGDLH
EEIYMSPPPGLRRQGEHLVCRLHKSLYGLKQASRQWFSKFTEAIQAAGFTQSKADYSLFTCKNGKSFTALLIYVDDILIT
GNNLPAIDALKRFLNTRFKIKDLGDLKYFLGIEVSRSRKGISICQRKYALDIIKDGGALGARPVSFPMEQNSKISSDTGE
ILHDPAKYRRLVGRLIYLTITRPDITYSVHILSRFMHEPRKPHLDAAMRVLRYLKSTPGQGLFFPAGNEMKLTAYCDSDW
AGCPTTRRSTSGYCVFLGNSLISWRTKRQKTVSLSSAEAEYRAMTGACCEITWLRYLLQDLQLPNPGPATLHCDNQAALH
ISANPVFHDRTRHIEIDCHFIRDKILDRTVVTRYISSQQQVADVFTKALGKEDFSAMVCKLGVHNIHSPT
>Copia-5_HV#LTR/Copia 637-5221 via tfasty with Copia-76_SB, 79.7% SW:4524, 3 frameshifts and 1 stopcodon. [Hordeum vulgare subsp. vulgare]
MAEPNALAEAFEKLAKILVESNSNSGAIVPRQEVAQKLEMSPLDMKLEGATNYLSWSRRALLAVEQKELDGHLLGAVDEP
EDKTTAEGKRWKVINSVLVGWLLNSVVPSIGRSVEGLSTSAEIWKTLSTQYSGKGNFMLIAQIEGKISRLRQGDDMSVMA
YVAELQALWAEQDNCDPLELYDAACIESGRKWIARRRVLKLLEGLRGCFHGRGASLLHQPLLPTIEETIAAMSQEEVRLS
LAHANVKFVPASTFAVTERMEWGDPNKCHICGEVGHWKRECPTRGRGRGYNRGGTGKGRYARGRGGYPWNSGGQLSRGRG
GYSGNSGGRAHMVVEEDTGTSQGKGVDEAAYGDFAHWASTDEGNSMKACLPPNESALEWVLDSGASKHVAGNSCVFESYH
KHAPTHKGTIQTADGTNQPVVGVGTVKCTSAISLSSVLHVPAFPVNLVSFSALIDQIDCRVILDKFGCLIQERQTSQTVG
TGTRRRGLWYMDQEVQPDLVCAATMEATMEDKEKQAMIHHCRMGHVSFDKMSRIFPDVMCGISKGKLTCDACEYAKHTRA
SYVSKGLRSISPFMLIHSDVWTSPVVSMNGKKYFVTFIDCYSRMTWIYLMRHKDEEFSCFQNFHALVKNQFQVQVNVLRT
DNGTEYVNNIFGDFMANQGILHQTSCPDTPPQNGVAERKNRHILEVARSLMFTMNVPKFLWDEAVMTATYLINRTPSRIL
GMKSPSELLIGDNKFVVSPKLFGSTCFVRDHRPSVGKLDPRAVKCVFLGYSSSQQGYKCWSPSEKRRFVSMDVTFRESEP
FYGTPTDLSLLFAELDHLHHVHDGQEGEKDVSQGDSVGNNTANVVQVQVQPIVGTIPVSTLTDDRSNQxCGTIPVSTLTD
DDVQVPVEPTVDTLKIDALRVPVRDRWQTNTLVYSRRQPHVQGEQQGSEARVQGEQQGNEARVQGEQQDSETSSSDTVEL
PIALRKATREAARKGEVARKALPKDDACDDLDIGNFVSYKALSPTYKAFVASLQTVSIPKDWKAAKQDPRWREAMIEELE
ALRKNKTWVLTTLPAEKKAVSCKWIYTVKQNPEGKVERYKARLAARGYSQTYGIDYDETFAPVAKMNTVRILGSCAANFG
WKLHQLDVKNAFLHGELQEEVYMEIPPGFGTLEATGKVCRLKKSLYGLKQSPRAWFDRFRRAVRGMGYGQCNGDHTMFYK
HSDRKITILAVYVDDIIITGDDEEEIERLKGCLSKEFEVKDLGNLKYFLGIEVARTEKGISLCQRKYTLDLLSDVGMMGC
RTAPTPIEQNHQVTAQSGELVNKEEYQKLVGRLLYLCHTRPDITYATGVVSRYMHEPRSGHLDIVHRILRYLKGTPGKGL
WFGKSGHLEVDGYSDSDWASCQDDRRSTSGYCVFVGGNLVSWRSKKQPVVSRSTAEAEYRALSQGLCEMLWVKYLLSELK
LLRKGPLKVWCDNQSAIAIANNPVQHDRTKHVEIDRFFIKEKLDAGVISLTHVSSGQQFADCLTKGLGTKDCNLACDKME
MIDIYHPS
>Copia-5_SCH#LTR/Copia 89-4417  [Schizophyllum commune]
MSSSSGSYRIELLNEDNYLPWKRRVIAILRDRDLLGHVDGTTAKPEPKTAGSPTADEKKSIEDWEKNDGKAQSVIELSLG
NEQMTHISQANTAKEMWEQIRTVKEARGDLGAIAYRRRLYRTVADETTDIPTHIKTLREIQSMLISMGEKIEDKEFITIL
ISSLPETWDQFTSSYLGARNAARIGTTNSTGTTTTTSPSPSTGTTQPSISTFELIALIMDEDRRRKEKSGTAGGDSALAA
MSGRGKDSRGNRSQRGGGEGDCFNCGKRGHYSKDCWSKGGGAEGKAPHRKKKGRQGGSQAHQGSASAFSARVPNDAVLTA
ETASTKTFDAKMPRDAWLSDSGCTTHIANDREVFVEFSPIGDEKITGIGEQAITAKGRGTVILESNIGGQSETITLHNVL
YAPQAVNNLFSIPRVDESGGRATFRDGKVRISNSAGREVLIGSLRNRLYWLDARARRVKNHAGVADGDDEGTGGAHGETW
EAWHRRYGHISKGALELLYKGGMVEGLTIDPKSPQITHCDACIQAKMHRQPLPRQARHRAQNTGEGAHSDLWGPARTRST
EGNYYYISFTDDATRRITVLFLKDKGQARQRVVEHIEWLERQYGYKLKWLRVDEGREYMSDKLTDELAKRGIELHQTAPY
SQSQNGVSERMNRSLVELARAMLLARELPKSLWEFAVTHAAYIRNRSPTAALPGNKTPHEAFTGEKPNVADLHEFGCPVW
IFAENVKSISKLDARATEQTFVGYVTGPRAIRYYDRRTHRVKVSRNYRFTESAAPINEIAADLENWPLEGEPQPVNQPSS
RPATPQPTPQLPKTPPTQSKPLTEAPPAPTKGKSAPTTKTSDENAGTQPTRRVLTRRTQDTNYRQLGNPDARLQASERTG
SRRTDNPEDAEDDPFTAFAHYAMRAAGAGDSEDDVPKSIDEARASPQWPQWEAAIQAELKTLEDMKTWTLEDLPADRMPV
GAKWVFALKKDQQGNIVRYKARLVAKGFSQRPGLDYSETFSPIVRPESIRTLLAIAAIQNLEMRQLDVKGAYLHGDLKEE
VYMVQPPGFEDETGRVCRLRKTLYGLKQSGREWNRKLHEILTSNGFERLQVDHGVYKRHIGDQYIFLTVWVDDLLVFSTS
STLIAATQAALAREVEVTDMGEPQKIIGIEIYRDREAGTVQISQQKYIETILKRYSFDNMSCVTTPLDPNVILEKYDGSG
EVRDARGTSFAEYMGSLIWAATMTRPDIAYAVSRVGAYTANPGQAHWTAIKRIFRYLRGTCNLRVTYGGRTEVELNAADP
DLTSIFDDYGAYSDADFAQNPDDRKSVSGYVYLLGGGPIAWHSKKQPTTALSTAEAEYSALTSATRQAIWLRYLFGELGF
ALDEPTLIFSDNQAALSISHDPQHHARSKHFDIENHFVREKIEHGIVDVQYCPTDEMLADLFTKGLPRPKHERFVYEMGL
MPA
>Copia-6_Mad#LTR/Copia 142-4443 via tfasty with Copia49-PTR, 3 stopcodons. [Malus x domestica]
LTNTNQSLVSGGSKTTTQIVTLQSDTSSFSAGIKLDENNYSLWHQIIEMKIAGREKHGHLTGDIAQPADSDPTFNKWRAS
DCQVKSWLFDAMQPNQIKRFIRYDTAKQVWAAIKQTYSDGADEAKIYDLHRRSFIMKQAGASVAKYYSELTEIFQELDQL
SPSTMEHPKDVETRRKEVDRLRVYIFLTGLDNNFNQIRGEILRMEPKPKLEAAYTHIKRESNRQGTMSEAGGTSEATAWA
AARSKQSRPNNYSIDPTRNQPPMKCTKCGLDNHTIKGCYEIIGYPEGWVHKGRKKDSTKASFASAQSSEETASEPPSGTS
GSKAxATSGTSYASSLTCNRSWIIDTGATDHMTSSFTGLHSTKPSSQTHITSANGTTSQVIGEWSISLTSSLSLDHVLVV
PSLDYDLLSVTQIIDSLNCTVCFLPLYCLFQDLLTRVVIGCSTRRGKLYYLDLTDDSSKRLSHAHHVRGDESIRMKKIWL
WHRQLGHASFGYLKLLFPDLFSQFAESDFYCETCILAKSHRISYPLRLNKSSMPFMIVHSDVxGPSRVPIISGFKWFVTF
IDDCTxMTWVFPLKQKSEVTAKFKLFYQYVATQFDKKITTLRSDNGGEYVNHDLHNFLSQHGIVHQTTCAYTPQQNGVAE
RKNRHLLEVVRASLFEARMPHHFWGEALCSAAYLINRTPSSTLQYQTPSQTLTTLLTMPSTPNLEPRLFGCVVYVQVYPH
QRGKLDPCALRCVFVGYADTQKGYKCFHPPTQTVHVTADVSFHESEFYYSEGVSEHHLQGESSIFATDTHNIQIQQNVLE
QSMSEQPATVVQQDQELLETPDDGSDNFPPTTVPSPIIQSGPENSPQVTEHLNSNLSTLPESSHTGNTGYQLPHHTTRGI
PRQQYDPDPKIKVKYPIANHVSLHRLSMSCASFVYQLSTVSIPSNVHEALKDPKWTQVMNDEMETLQKNSTWEMTILPKG
KRTVGCRWIYTVKFKADGTIERYKARLVAKGYTQTYGIDYEETFAPVAKINTIRVLLSLAANLNWPLHQFDVKNAFLHGD
LEEEVYMDFPPGCKMGPNMSNMVCKLRKSLYGLKQSPRAWFGKFSKSMKDFGCKQSNSDHTLFLKHKKGKVTALIVYVDD
MVITGNDPEEKAALQHHLASEFEMKNLGALKYFLGIEVARSEQGIFLSQRKYILDILIDTGMLANKPADTPMELNHQLGE
YLDQVPTNKERYQRLVGKLIYLGHTRPDIAYAVSVVSQFMHAPSEAHMDAVNRILRYLKSSPGRGLMFARHGHLDVEGHT
DVDWAGFVTDRRSTSRYFTFVGDNLVSWQSKKQKVVSRSSVKAEYRGMAYGVCELLWIRNLLGELRFKPKHAMQLNCNNK
AAIDIAHNPVQQDRTKHVEVDRHFIKEKLEAKIIEVSFVKSKDQFADVLTKAVTGRVFHSSLSKLGIDDTYAPT
>Copia-6_ES#LTR/Copia 96-6206 via tfasty with Copia-83_PT, 54.3% SW:893, 1 stopcodon. [Ectocarpus siliculosus]
MEDIDLSALSGEELQQKVEEIVQQRVQAELEANRINEGEVTIAQPPAGNPATPTGNPVPPTGNQPSPSSQGTPATFNDPS
SVAHIVAQAAKATAEAIAQQQGFARSGTLRVNPGSEIEPWLGSVKKEQDLYIMFDIFRGKMISYFQEEGVHDALELEVEV
KVGKRGVNVGDLRRLFGNEVVDKSFKLWNILISKVMYPPIQSLILACESPQKGWKIVTEFYQEKKQSEKSRLEQDWKELE
MKESESPQDYIARSEALRLRLASVGTIKDETDANKDIARGLPSSLYAVQKGILLAHDVLTLRTLETVVRDAHVEMERERS
KGERREVELALAASGMSRRGGGSGGASWGQDGGQAAAGGQNRDGEKKNNDVFNDDPGGFCRYHQSELHTNEQCRLQQQLR
RARSREGAEERRSGGGSRGGGGSQRGGRPPPGPGRGGGRWVRIEQQHHTGHGGGGWSQASPPPRPLRGRGPGGRLGRPPG
GRGPAGRHSSDGRAERDRAGRGPGHARSGHGREQAYVVYYAHDDGGYYEDYGDYDEGYSYDDGYHDAGYAHYAGGGDSYS
YSSGYEDSRSSDGGIHYVYYPPAGQDSSSEQPRQPPPAGSSSTASSSSSAPSPGAPPSSGYLHLCTAQSVPLGKSHPEDF
FGRIGVTIGVESAASASSLLSVESSEGPPGSERWVADSGASNSFTNSSLHMYDLQEIPANRKYVVVGDGRLLEVQAIGSI
NLSFFQEDENGEKTTMCVKLTDVSVVENLSFNLFSTHAVSRKQQILHDERGATLQNGLLFAREEKASAAYAMRLPYDPSA
TIVDSSALPAFVTAPDSAPAVGSTRSPSQKGGSAESLVSVLRFPPAGSASVVPSSESVTPAGPTSVVPSTDSVTPTGPTS
VGPASDSVPPAGSAGVVPSSASEFVCVGTFPGMDLGDTSVLTDEQLMDGYDDTPYQEFFPAFIPETDAANVAAVLDSIDG
GADFDFGAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPG
ARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEW
TRGDFRQFCDDNGIGVEFTPPGTPKYNGVVESAIWRIMKAGMAARRSAGRVFNVDFASIPGLDERGDRLWMESAKWAADA
LNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCFYLNGGDNHPSGTVKVLKASTGRVVYTN
NVSWVTSAPAGEGGSAGITAAPTPPPFTPPVVSINFGPAPTPSTAATPPAATPPPATTPPSAPTPSQPPSATSPPPSATP
APGQPSSASSPSPLATLDPDQPPPPDPAMPPLTAHAMRQLRPGTKAEGMIDPRLPSRTRSGTRHSTGLISMLDKNTLVSM
LEARSAVDEERRELGGAEAGEPGGAGGGEQAGALAAVDPGAGGAGFPLAFATLLANREDIDATLRDQRPPEQRPDLPHCQ
ASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTFTPAKxQLVENAINAKWVFDWKADEFGWPTKVKSRLVARGDM
QREYIDFGELYAPTVSVSCVRMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQA
SRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGC
FYERNKETGRLTISQQTFADELAAEYGVVGGKSVPMSSGVKLSDFDADEVATDFPFRELVGSLMWLATQTRPDIANAVRA
VARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQ
KCVTLSTTEAEYVALGDIVKEILFLRQIWRFMLPQVGLPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERK
EISVMHVPSPYQRADFLTKSLPKDAFESHRDFAMNLA
>Copia-7_SB#LTR/Copia 1653-6461 via tfasty with ATCopia27, 7 stopcodons. [Sorghum bicolor]
MYRNMSTTREFEELALDGSNYPTWASDIKIALAARKLSSTIQEPQQGVVVTDQQNFSALALLRFYIHKDLKAEYVMLENT
RELWVALKERYDQQKELIWPEANHEWNNLRLQDFKTVADYNHAVHRICSRLKFCEKEPNDADKIEKTLSTMHPSDRVTQQ
QYRAHRYTVYSKLIHTLSxAEKHDELLMKNHHKHPVGSAPLPEVHNVQKDNRNKHKFQRRDPRNKFNKRKFKKGNKSHFD
NKKKGFDNKKKDNAKPRNDRRCHRCGDYSHLAKDCKTPKHLVALYQKSLKETKPTEDKKYETHFNLASEDKEVGCSRQAP
IKKKNTTVEDLPSTDNMLIDFGSGDIFGDLExFGPDLTICVVIIIAILxQAYTFxLYINKYTILCILFDIYIYNIYIHLF
FxYVIVAYSFFxFKVYDIxMSKTSNPSAEELCLVDSCTTNSILREIKYFQNLKKKEGNIMTINGKDTVIVGSGRATITLP
MGTQITIEDALLYPNSTRTLLSFRDIRKNGLHAETHVDNNKEYLLLTKLTGYGKQICEKFSSLQTGLYYTYIKPVPHVTY
KIIFQDVDTFRNWHDRLGHPGIGMMRKIINNSIGHDMTKAKFPQNKEFCCTSCATGKLILRPSYLKIRAEPLKFLERIQG
DICGPIQPSSGPFRYFLVLIDASTRWSHVSLLSTRNQAFAKIMAQVIKLKAHYPEHRIQSIRMDNAAEFSSRAFNDYCMA
LGIQVKHSVPYVHTQNGLAESLIKRIKLIARPLLMNCQLPTSCWGHAVLHAADLIQLRPTAYHDTSPLQLVRGNPPSISH
LRKFGCAVYVPISPPKRTSMGPHRKVGIYIGYSSPSIIKYLEPLTGDLFTARFADCIFNEDHFPTLGGELYRNKCQEIEW
NAESISFQDPRTIETEQQVQRIINLQNIANNLPDAFTDYNGVTKSYHPARNVPERVEVPKKTTQPPINNKRGRSTSKKQD
KSANKQKKTTKSNTNLVNKHLEDIVCPMDSYNPHSSSVMRINTRASTSEHPGSIIKGNNDEPLRTEEIAINFVETGESYN
RKSIIVDCYFSEEIANVFHTDLDPKSMAECKKRSDWDKWKEAIEVEIASLNKRKVFSAVRPTPPGILPVGYKWVFVRKRN
ENNEVVRYKARLVAQGFTQRPGVDFNETYSPVMSGITFRYLISLAVQNRLSMQLMDVVTAYLYGSLDSNIYMKVPDGIHV
PDNKANRNMYCIKLQKSLYGLKQSGRMWYNRLSEFLKLKGYTNNDDCPCVFIKRSSTGFCIISVYVDDLNIIGSETDINE
ARHHLKTEFEMKDLGKTKYCLGLQLEHLPNGIFVYQSAYIGKILKKFNMDKAYPIKTPMVVRSLDVEKDPFRRRGEEEEV
LGPQVPYLSAIGALMYLANNTRPDIEFAVNLLARHSAAPTKRHWVGVKSILRYLNGTRDLGLFYSRSQDPNLIGYTDAGY
LSDPHNGRSQTGFVFMHGSTAISWKSTKQTLVSTSTNHSEIIALYEASRECVWLRRMINHIIQSCGIGKVDAPTIIFEDN
SACVSQMESGYIKSNMTKHIIPKLFYPHELQQNGEIEILQTKSCDNLADLFTKSLPYSSFSKCVKGIGMRRLRDLRESGG
ESH
>Copia-10_SB_gag#LTR/Copia 61-2241 via tfasty with COPIO_gag, 1 stopcodon. [Sorghum bicolor]
MINPGKPPPFDGIRYTDWAHRMKLHLIAARCWEVVDIGMNPPQNPSEWTSEDERDFHLNATAATLILQCLTPEDNNKVNG
MVNAKQIWDTLKVSFEGDKSVRVGNIELLQSKIENFCILEGETTKAMFDRFMSLINQIRALGATTWDDNSAARKICRVYR
QRNNMLASIIMEKDNYHTMTPQEMLAKLMHHEILDDEAKEALNQRKNIALIASHGSESSHCNKGCCEHKHKEDDDLDEEQ
AMLVGNYKNYLRMKKDKMRRYGGSKPYRKRFCYECGDTSHLAADCPNKGKKSRYTKQNDKKYKDKKKGEAHLGQEWQSDS
DSDDDDNEKKSVAAIAVQEGSSPNKILTNVASSTALISDIHSSPRLFANLSDDDDDTPTCLMAKGDKVQADFSPQTTSDY
NSDNEDDENYANNLIQKYSKAAATKILKLIYANDKLESCIESQGELLLEEREKNQGLEVCISKEKERVEKLGVELSLVKD
SNERLTKEHSSLNGSLASLKTNHSLAQESLTSLTTKYHELEQNYEKLWTSISTISKDSKASTSKSCERCINVDINACLTN
LDELAKKDKEIQRLNTIVKIGCKCKDKQPANVFKAxRHPIIKDGLGYSRYNGRANGRNMINGVACVKFNKSVPLVDLIDK
VNNVVTPTIPLASNKDIKKKQREMPKQQEPVSRNHISDYLCCWDKDGKIVVKYVGALKKRQILRSIWVPKSYVSNPLGSN
SGPKTKA
>Copia-10_PIT#LTR/Copia 298-4653 64.7% sim to TNT1, SW:1682, [Phytophthora infestans]
MPRSASSDAPTAGDDGDVEMGQENPPVIQSFTAQKRDELKRAEKLRAKSQRLSSKKLRLNEAKAKAFLIKTIDDQHVLMV
KDKTTAFEIFQTICSKYEGAAIHGDPYHVLSYLMALRYEEGSDLTGFIIDIESAMKVASEATNSVLSDEQKSLYLYHALP
GKWKQQLSVWKGSRKFIPYEELKRHIEAKVQHELAKNRYTLKQGTPESRETRNEQALQALAPEPTLVQAPYQESKALIST
MSCTYCLRTNHDTVDCYVLQRHLQNGQVKAGTVLPANFKLKPSSNQARQHPYKDGFGGKSRSQNRNDYKSKRNSNRNRSQ
NGNQKNTSEKSKSHNKFHGRRKDTDSDNEYGIIAITTLDLRQETEAVSLTAQDAEHDPVWTVDSGCTRHVTSNPKWFEKL
IPSAGKSITVGGNHQIPIKGTGDVKMTIKDTKGKEREISLANVLYAPQLKFNLLSVRQAVEDDFKINFPNAKKCVLFFAS
RTKFEAKIGEGTRLYQFQASPATSSQVAHVATSGKPDNVILWHKRMGHPNFRIMQDLAKANTVMDMGLKDFDSKKDYFCS
SCTYAKAHRNPFNKRTVERAKFPLEKVHSDMAGPLPVPTLSGCQYFLTFIDDYSRYMFIYIIKRKSELYECYEDFRKKAQ
NVFRADVSELQFNENIHDEEVRHLQSDNAREYEKLGKMIFQKYNTHAQFTNAYTPQQNGVAERRMRTLLERTRAFLIDGN
LPQVLWGECVKHVADLLNITPSSVTDKITPYEKWFKRKPSAHYIKVFGCTAYAHIPEIHRTKLEPRAKKCMYLGLPSNKK
GYRLLDTKENRVIYSRDVVFREDEFPHLEFLNTPAISDQNGPAPTLSPSLPTPQLLPPIASLLKRSVNALAAEVVVKMKK
VKHKTNAQNENEHSCLLDDPLDINERKEHLTHIYALLAIRHISEPKTFLESQKLPEAQHWEKAAICEYKSLIDNKTWVLT
KLPTGRRALQCRWVFVVKYNGDGSIDRYKARLVIKGFLQKYGVDYDEIFSPVIRMEVLRLLLTIAALLDLEIHQMDVKTA
FLNGYLDEEIYMLQPEGFTVRGKEHLVCKLLKSLYGLKQAPRIWYLTLCSFLLTMKFHKLIKDQCVFIGVVDGATCYILV
YVDDLLIIAPTLDIINNIKNALKQRFKMSDLGEAQYILGWSIVRSRTDRTIFIHQEKYATKVLDRFSHLDAHPVGTPADP
SVKLTEAMCPQTPEEKHEMKAIPYREAVGSFMYLMMGTRPDLAYFLREVSQFLVNPGKPHWNAVKRGLKYLNGTRNLGIT
LGGKQNLEQYKSKHYLTAYSDADYANCPETRRSVGGYIAYMCGSPISWQSRKHHTVVLSTTEAEYIALCHCMQEVIFLKL
LLVELKHESSHAITLFEDNQSCIKLSYNPELHGRSKHIDIRYHFVQEKVERKEFEIMYCNTKEMVADIFTKALSKPLFIN
LRGSLCKTLIQK
>Copia-10_SI#LTR/Copia 108-4037  [Solenopsis invicta]
MADDEKYKVPLFDGTNYSNWKFRMQVLLEEHDLFDFVEKSLDTLISELPTTSAGTQSVTVRKSDRKCKSLITQRIADSHL
EYVKEKPTAFEMGRALSESFERRGVASQLRLRKMLLTMRYVTTETMAAHFLKFDKLIRELKSTGATLEETDIVCHLLLTM
PEEYNMVVTALETLSSEQLTLGFVKTRLLDEEAKRGGTSASGKGANSPAVFSAATANRKVNANKHDGTTNEKQRERFGFK
CHHCGILGHKRSECRKFKQGNKNSSSAKVAFDEDVDKSRKEFVFIAKEENAIASTCWFLDSGSSEHLATKETRLINMRNI
TPSVTIRVAKSGQVLTASEVGDLSVCVRANGEVRKILISGVLSVPGLECNLLSVRKLEMNGFTVTFKDGKGIIHKENIIA
AIAHRTEKLYKLHFEYNSEVTNICETEENFLLWHQRLGHLSSAGMKKLLRMADGIKLKDTDLSSEVCEVCVDGKQTCLPH
QTKRIRAKRPLQLVHSDLCGPIDITSFDGKRYLLTFIDDYTHFTVAYTLKAKTEVLRHFKMFQSMAEAHFNLKISRFRCD
NGREYLSNEIRQHFENCGVQYEFTIRYTPQQNGVAERMNRTIIEKARCMILNSKMNKTFWSEAVIAAVYLINRSPTIALK
GKVPAELWFGEKPNLRKLRVFGCVAYLHIPKELVNGKFESRSKHCKMVGYCANGYRLWCPEDNKIIFGRDVVFNESKFAF
ESRDFYNGLIQRNPEEVTNAEETSTSGGEEEEEAESDETDTTRKQDVNNLRKSTRKKKQPKYLEDYTILALHAESFVENV
PEDFDDIQGRDDKEQWLSAVNEEMKSLIDNKIWDLVPLPPGKKAIDNRWVFRIKRDHDGNIDKYKARLVIKGCSQRKGLD
YNETYAPVARLTTVRTLLSVVNKFKLKTRQLDVKNAFLHGTINEVIYMKQPQGFAKNNGLACKLNRSLYGLKQAPRAWNS
RFHEFIIQQGFERSERDSCLYTVFSKNNRIFLLLYVDDIIIAGDNEQWMHRIVNSLRGEFSMKDMGELKTFLGIRIEQTA
EGMFLNQKTYMKNLLSRFGMTECNPSKTPMEVNPGKHEELEEETVIELKPFRELVGCLMYLMLTTRPDLSVAVNFYSRFQ
SNAKLAHWKGLKRILRYIKGTLNHGLFFKCDSNLEVPLQIYVDANWATDNDRKSTTGYLLQVFGSTVDWSTKKQGGVTLS
STEAEYVALATALTEAIWLKGLLESFGVHVDDPIKVFEDNQSVIHLLGRWDHRRLKHVDIKYNFVRNMYQNKEIDVQYLN
TKEQIADMLTKSLERGQFVKLRSYIGVCEI
>Copia-11_BRa#LTR/Copia 67-4065 via tfasty with Copia-87_BRa, 89.0% SW:5210, 1 stopcodon. [Brassica rapa]
MSEKEFNIPKFDGDYEHWAMLMENLLRSKEWWDLVETGVIAAKRNVVLTGAQRTEQAEQKLKDLKVKNYLFASIDKAILK
TIVKKDTSKDIWESMKNKYQGNKRVQSSQLQRMRRNFEVLEMKEEDTITEYFSRVMVVANDMRNLGEDVPDAKVVEKILR
TLVEKFTYVVCAIEESKDITAMTVDELQSSLLVHEQNLSKHIREDHALKMEGGRGGYGYRGRGGSRGGRGGRGRGSFNKD
NIECYKCHKMGHFKNECPEWDRNANYAELEEDVLLMAQTDLAGNEEHVWYLDSGCSNHMCGVREWFVSFDASFHQSVKLG
DNRRMEVEGKGNLRIEIDGCVQVITSVYFVPGLKNNLMSVGQLQEKGLKIVIEEGTCEVWHKQQRRLIMRSLMSKNRMFV
ILAKIREPKKEMDVNNLMSSTEDTDEVWHCRFGHLNQNSLATLANKEMVTGLPKIKNAEAVCETCMKGKQIRTNIPKRSL
WKAGRVLELVHTDICGPITPISESGKRYIINFIDDYSRKCWSYFLVEKSEAFKTFRDFKAASERESGEMLVCLRSDRGGE
FNSKAFQDYCVEKGIKRQLTAAYTPQQNGVAERKNRSIMNMVRCMLFGMGVPLRFWPEAAQYAVHILNRSPTAILENITP
AEKWGKNKPSVDHLRIFGCVAFAMIPYERRVKLDEKSIKCVMFGVRKESKAYRLYDPVLKRIIISKDVKFDETKRWDWEE
VVENNEFIEVAEEEVGENPNATEAEEEHEEGDNEPEAEPEAVTVTNPVAAPAPTQTATPNTHEGRVGRSKQRPAWMSDYD
CEGMGMQMEEDSEEVLALYISGDDPETFEEANQHDKWRVAMKKEMSSIEENDTWELVSLPEGGKVIGVKWVFKTKLNEKG
KVDKFKARLVAKGFHQTHGVDFHEVFAPVARWDTIRLILGVSAQRGWEVYQLDVKSAFLHGELSEDVYVEQPKGFESRED
SDKVYKLKKALYGLRQAPRAWYSKIEGYFTREGFTKCFCEHTLFVKVKGDDVLIVSLYVDDLIYASSSATMLEDFKVSMM
SEFSMTDLGRMKYFLGVxVTQDETGIFISQKKYANEVLSRFGMEGCNAVRIPMVPGCKLTREGSGAMVDATMFKQLVGSL
RYLTATRPDLIYSVNLVSRYMEAPTEQHLLAAKRIMRYVQGTKDYGIQYKRGGEGELVGFVDSDYAGDEDDRKSTSGYVF
LYGEGAVSWASKKQPIVTLSTTEAEYVSAANGACQAVWLRNVLKSIGSDQREKTVLFCDNSSTIKLSKNAVLHGRSKHIQ
VRYHFIRELVSDEVIELEYCSTQDQVADIMTKPVKREVFEKLRGYMGVQLKNE
>Copia-10_ST#LTR/Copia 98-4576 via tfasty with Copia-74_ST, 71.6% SW:3314, 5 frameshifts and 2 stopcodons. [Solanum tuberosum]
MVDTQISSRSVTEKSDGISATNAVDPSHAFYIHPSDSPGMNLVSTIFDGRSYGGWRRGVIIALSAKNKLGFIDGSLDVPV
DINLQKAWSRCNDMVLSWLLNSFAKEIVESVLYSKSAKVLWSDLEDRFGQASGAKLFQLQKDLNVVVQGNSSISTYFTKM
KRLWDELDALNTFSACSCNCVCGAKEKGLKAHQDERLLQFLMGLNDTFIGVRSNILLSFPLPTIGQAYSLVIQDSKQREI
YAIPNYPTESASFLVGNSGNRRFDEYKSQQGNFSKKNNLMCNYCKKKGHLEQCYKLHGFPDDFKFTKNKRYPKGHVANNV
FNSTEGNNQSMESSTYQASLSQENVTQLLQLLQKMNHQTGSTEGSANISCAGIPKLCNSNVSLFKVGSNSWILDSGASEH
ITSNRTLFSNLNFLPKPIMVTLPNSHRANVTHSGFVELLPNLTLHNVLYIQSFKCNLLSIHKLCKQFQKYFLFTPSKCFM
LQGPSLKISLEVGKEHGGLYIFKSIQPAVTKSLFSISNHGDPDVLPTKCLSSFKPTSLCSSNSVANVFTSCSSFFDSNVK
EKLWHYRLGHMPLSNMKNVVPVSLSCSKFSSPCIICPMARQSKLPFPKSVLSTKSVFELIHVDTWGPYNTPTHDGFKYFL
TIVDDFSRSTWTHLLSSKSNAFSILKSFIFMVDRQFNSQIKIIRTDNAxGLEILHSDFFLSKGIIHQTTCVYTPQQNGIV
ERKHKHLLETSRALLYQSPLPIIYWGExLLTATYLINRFPSSILHHKTPFEILFKDKPDCSHLRCFGCLCFVSTLSPHRT
KFDPRVLPCVFLGYPYEKKGYKVMNLKTKKISISRDIIFYEEYFPFSLDMSHISHKLFPVPTSDMFVSDFPLFTPEPEST
GSSVPDTLSPVSSTTLHSSPSSPSSDCNPNHFLISPCPVSPHHRPIIDTLIRKSSRNTRTPSYLRDYVCNALQLTYVSSS
CFLSPVTPNSFSFTDLSSANQVMLNSVSNIHEPVSYTWKEAMSKELAALELNRTWDVVLLPHGKKALPCKWVYKVKQHSD
GSIERFKARLVIRGDIQKEGVDYNETFSPVVKMTTVRCILAIAVKRGWGLFQLDVNNAFLHGDLNEEVYMKFPTGLSSPS
PNHVCLLKKSIYGLKQASRQWYSKLTATLNFNGFSHSLNDYSLFFKKSADSISIVAVYVDDNLLTGDNPAELQDLKSFLD
DEFKIKDLGNLHFFLGLEVIREPHGLILSQRKFIFELLTEFDCLNLTPVSAPLDSSVKLKASEGIPLKDPTLYRHLLGKL
NYLTYTRPDLSFTVQYLSQYMQDPRIPHFNAVLRVLPYLLKDPGLEIFMSSSPYFQLLAFCDPDWGTCPDSRKSVSGFYV
SLGSSPITWKSKKQASISLSSAEAEYRSMRRVIAELTWLVHLFEDLNVPISLPVPLHSDSSAAIHIAKNSIFHEQTKHVE
IDCHFVRQQYLAGLISLSHVRSSSQRADIFTKSLTGPTHHSLLHKLGVSSSPPT
>Copia-9_PGr#LTR/Copia 237-4697 59.7% sim to Copia-9_SMo, SW:1441, [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MNSPPSPFTKPEYSLSTSPKSDPDSISVSSKPSLLDISTLCVHPSLTDSKPNMSSSAQDSEVASHPTLKLTGVEQLKPPG
SESNYLDWSWVLEIHFTATDVDYIINDKPEVAKAKSNWDRDNKAVCGIISRTIHPTNIRNVRHLKNDGRGLWDALKRAHQ
DSSAGGVTYWLRKLTSSRMVNDDLLAHLEDMAKTFERLSSLVTADAPLTPNDIYSSSILTSLPPDWLACVSSMMNEPRVN
PERVIDALKAEDLRRKTRSADQPVVEAASQASGKRQSKSKSSKQDQPARHCTFCNLDGHDLNRCFNVARLIENHKSNQAP
QKQKKAGPNRSSSSANQPAKAGRTSAAPLGNFNDQPDDESDFSGSELEITAGQAAVSLSSSLLPTVPSGDANLDSGCSIS
MTPDSGAVSLAKPNNTPVRLADHSTVEATHKGVSRLPLKGVTSVPTLVVPALAEPLISIAGLCDAGLTAVFTPTSCDIYS
TGDVKVSGSLVGRGYRRGNLFYLPSQPVGHPSSSFTLDNKVDNTLLGYHRRFSHIGLQPLKTLLKSQGITPTIWNEVDVQ
KCEICVQSKMHRRSFKSRSSYRSQTPGQLIHSDVGSFEVTSREGYKYFISFVDDCSKSVSLFPMKYKSDSFNCFKVFRAF
FEKSGHFKIQALRTDNGGEYMSNEFKNYLNSSGIHHNPGPPHSPQLNGVAERTNRTVGNFIRTALISAHVPKSFWVDALR
HAFYANDSFPCKTPIGFKSPASILGKPLVDLSLLHPFGCLAYYKFQEADRKKLDVKGRASILLSYLDDGNGYRLYDLEKK
TVIKSTDVTFFEEIFPYGADLKVTPSPVIVELPWPVVSSPIKPVTPPLDANPVPSSPLPTPSPTRDRVPTPDLPLLNIPL
QDRFDRRLTASIHAPSNSPKTSVEPPATVTIPSSSIPSEDIVPISLPPLPPSPPSLPSASAPPPSPPRRKSGRERKAPER
YGNWSKSAKITDNVDTPKTWRQLLKSPNKHRWLKAAEDEFSSLLGMHTWRLVPRPEKRKIIKSKWVFKVKRRPDRTIQKL
KARLVAMGYSQVHGLDYDEVFSPTLRLETLRLILSLLAIRKWKGRQVDFKTAFLNGHLEHTVFMEQPPGFEDPSHPDWVC
ELDRSLYGLKQSPRQWNNELHRALLDLGLKNSAYDPTLYFKLINGNLVGALTTHVDDLAIVGEPTFVDHLISSLGSKFKI
GADEDLHHFLSLKISRDIPNNLVYLNQSHYIDEICDRFLDGSHLPVSTPTDSNFKNLRRKQECDLPSSGPYNQIIGSLLW
VSQCTRPDISFAVNRLSQHLRDPSDAHWSAAVRVLNYLVTTKHLKLKLGGKLSCSGFSDSDWAEDRDDRKSTSAYTFRIG
DGAISWKSRKQATVSLSSTEAEYKAISDSCKEGLWLRHVLSELRLRPGTAIPIHVDNEGAEALAKNPEHHARTKHIHARY
HFVRECLADEEITLLHVSTKDMLADMLTKPLSRLMLERHREMFGLVA
>Copia-8_ADe#LTR/Copia 212-4897 67.4% sim to Copia-3_PSH, SW:2748, [Auricularia delicata]
MSKDSRFPLLNGENWGPWRKDMLARLALKGVLEYIDPESEQRHVPTDASEYAAWVTGARLCCGLLWENIDAHTKTNIEID
VLRPTPFEVWEQLEDMFVPRTAGSRFTVLDSLLRCNYNDGEKLIEYFHRALTLRNELELLVPANRDEYKISSLIDELTAF
ALIRGLPEHLQQFRQALTLNADTIPLTLETVRNCFTSEDTQARSKGTDPGTLAMRAFAGTPASARPSGSGTAPSGSMSTS
DALLAFATALGLSGCYLCDGTQHKVNKCPFLPDARAHCKAKRQEGNRRRSGKPGSANANAAATTPAAPSVAPAQPIAHSA
QASLSIPPSSVYYALLASPASVSLSNWNTDTGCSAHMTPRREWFSTYSPHRVGIRLADHSVIYSEGMGSVEFAAVVDGVP
RGIIVFHDVLHVPKLAANLLSVFSLMTHRGFRISGEGSTLRFIKNDICQFTATVNERNIGYLDGTTLEHPVTVYAAATTT
VPLNLATWHLRFSHLNLDAIRSMVKHDAVENLQIKSADRPDPICEPCLAGKHRRHDVPRGPATRRSAPMMMVHFDLKGPL
PRSVEGYQYWLIAVDDHARQYTVAFQRLKSESAASIRHFAAYAKRATGRDLQIVHNDKGGEFISKDLLTWCKEQGIVCKF
TETGEPYQNGVAERANRTIVEGTIALLNQAKLPVSFWPLATAAFVHTRNRAHTSALPHGQTPYSLWKGKKPDVSYFRAFG
CLAYILVADNKRPNALGVHSEKVIFVGYADNKPCWKFWNPELRKFRETSQAKFDERYFPGNSSITIRSLTDDNASLQESD
WGGEDASSDDEDDLPGAPPTNLRPVADSAPRGPPLPAVPVAPLPDLAPIPPASAPVPIVTAPPAQPGDTLPVQREVSPAV
KRETPPVPKRESVSPSSSLPKSATPTSVPLPPSPPRQPSPKIGPAQKVAGVRHSVRTTRPTKSLKEPDLRRTSSYPIAPA
LGSTASAAAAAVEIEELDEFAHLTEAEMSLLEDCLLAGVQTMVDDADVLTLNEALEYAFDTRHDDSKAQVPEREPRSWKE
VLRLPTEQRQPWISAAEDELEALRRAGTFELVELPQDRRAIGSRWVFKVKRNADGSIERHKARLVAQGFSQRPGFDYSET
FAPTPRWAALRTVFALGALEDLELESVDISSAFLNGDLKEDVYMRQPEGFEERGKTWVWRLLKSLYGLKQASRNWHEKLN
SVLESLGFKRIICERSVWVYGRGETRIIVPVFVDDMTIAAKSKAQVQRVKDELRKHFALRDLGPTTWFLGIEIQRDRDRR
VLSLSQRQYALDVLRRFGFEGCNPVYTPVDPGSRLSTKMSPQSDEEKEAMKDIPYLQAVGALAYLAIGTRPDIAYIVGVL
ARFSANPGMQHWAAVKHLMRYVRATIDEKLIYAPVPGQSERFRSFSDADHGGNVDNGRSTTGMVVKMGTGATSWSSNLQS
IVTLSTTEAEYVAAVKVGQETLWYRHFFSQLGYINASPSTLSIDNLSAVQVARDPLHHGRMKHLDLRFYWLRDEVACGSI
RIEHCPTDTMPADILTKALTRPKVAAMRKLLGLAVSYDTLIS
>Copia-7_TMe#LTR/Copia 81-4436 61.3% sim to Copia-7_SMo, SW:1587, [Tuber melanosporum]
MSTSDRTSKLFPSATGTVEIFTCKFGTTQKLNESNFHHWSEDLKAFMRADQTYDVIFKNQNPPTPDQQPAYAEYRNKINR
AFGMIFTSCTQQAKQHIRGLDCPIAMWASLRKKYDVTASRIGRSTLQRQFFALHLEPGMQINDLISAMKSLQSRLLGTDM
EISPNSFVSLLNSRLPEEYLPTMDRVLSESDLDIDRLVEAILQKEQAIRERKDDVSGSNTAGASTTALAAGITYSTPSRG
RMRGSQYNRIYNRGRYSNTNFGRGQNRRHEGRSGLVCNYCTKRGHREANCFIKQRAERRSRALHPTDSHSSLPSRISGNH
NEEALIASYVSENALIVDTASIALEQANWIIDSGASDHLTHDRRAFHTIKTLPAPVPVFIGDGSRLLGVARGTIQIRLKS
GAVLELEALYVPKLKYSLISVARLCQRYSITFSSTTCEIVGKARKPNRLAVLQDGLWRLCGSPLTIHTSHALLARSGSSI
AKLSWALWHSRLAHLNLHSLKVAIGDSLQQPSASDTEDLVGCTVCILAKQQRKIIRQPVPRAIRPFELIHSDLAGPIAVP
SCSGARYFILYIDDYTRYTSVYFLRTKEATEVTSCFQEFITRIGKQFPQFPVTRFRCDNGRGEYSNKFFRGILRASGVLF
EPAPPYTQHKNGLSERMIRTIATKGRGLLLDSKLDPGLWAEAINTATYLHARSPSRVLGDKSPYEVLYGKKPSLLHLRRF
GCLAYKLIPEAQRTERKFGPRSKRCAMLGYVHDTGKIWKMWDLEQKRPFQSSDVVFDETKVAGSFEHCSGHDILKPLLPE
DILLVDENEEDPVDYHVIDVGGVRSPTEQSLTVGTSEKTARLSESLIENMGCTKSPMRASPVVDHEMQPTPAAESVQMQL
TPAECLDSRPAPVLPQAPAIIPPLRRSGRIKSQVAQVALADEDRSAIYDYEGSHGVDPATYADAASNEHWGAAMRSEYKS
LIDNETWTPELLTSATVPILGCKWVYRTKVEADGSIRYKARLVVRGYEQVEHGETFAPVARLTTVRMLLAVSVLKNLQVH
HMDVTSAFLNPPIGDEVVYIRPPEGIEWLDPDLYDQVGSKVLRLRKALYGLREAPRLWFQDIDNYLRSIGFKPSTSDSNL
YLSPTVILVLYVDDVLLASSSAFELQKVKEKLLLKYKMKDLGPVRQFLGLEVYQSSGSIQVKQERFIGSILRRFGLENCN
GLYTPLDPKALRSVTTTDTPGLSPEDRHLYQSMVGSIMYAMTGTRPDLAYSISVLSKHLASPLRSHLVIAKRVLRYLKQT
KNLGLSYIRKEEPMSTTPHGFTDSDWAGDIEDRKSTGGYAFLLANAAVSWKSKKQSIVALSSTEAEYIACSEAAREAIWL
RRLYSELVSTPSYSTPLLLYADNQSAIHLVENNKFHERTKHIDIKYHHVRDTLSQGLIRIEHIGTQDMTADILTKALTRE
THRKHLHGLGLF
>Copia-8_SB#LTR/Copia 543-5057 [Sorghum bicolor]
MGDNQGIEQILGKLVDLLTEKKNEAPSSSKVGVPLYTDAVQKLELTPNDIKLEGVKNYLAWSRRALLLLKAKKLESFVNG
KVTEPKDKSSDEWKAWDATNSLIVAWLLSSMVPPIAGSVDTIMTAYGIWESLSKTYSGVGNVMLFVDTDDRLYHLKQGEL
SLMEYVAELKRLWADLDHYDPIELPHPDCVAWVKKWVEKKRVLQFLRGLNSEFEGRRASLFHQSSLPSIEEAIAAMAQEE
TRLKVMKGNVPAPSRPAYVVTRSQETRICYNCGDKGHLSRDCSQPQKTYRGRGRGNDRGAPRGGRGHGGRRGLRANFAMS
EEGASDLVTISATELEELRKLKENKNNSKSDDQGVVSTSTDNVANFIHCDAGMKKQALLSIENSNSSWILDSGASRHVTG
MSSEFTSYTPYSYSHKDTIQTADGTSRPIRGVGTVQCTPSITLSSVLYVPSFLVNLVSISSLVDQMDCQVFLDRENCLIQ
ERKTGKRLGTGVRHNGLWYLDRRKTNKAICLALSAIANEDEAKVMLLHCRLGHISFDIMSRIFPEQMCKVDKSKLLCDAC
EFGKHTRTSYVSRGLRSVSPFILIHSDVWTSPVVSLSGMKYFVTFIDCYSRMTWLYLMKHKSEVLNCFKDFCACIRNQFN
AHVHIIRTDNGSEYVNNEFRSYLSTEGILHQTSCPDTPAQNGVAERKNRHLLEVARSLMYTMNVPKFFWSEAVMTATHLI
NRMPSRVLGMKTPCEMIFGKNEFIVPPKVFGCTCFVRDHRPSVGKLDPQAVKCIFIGYSSGQKGYKCWSPSEHRTFVSMD
VTFRETIPFYGEKTDLSDLFLDLDSSNTCEVGDEENGPLVTKDVEESRRSKVITGLIPCPVVVSEATNVEKERTSHTERN
LQVYTRRRRNPSVQPSPVNDEDGTQVEQPQLVQQEQLPIDNEVDNPSAPSSENINSSIDLPIATRKGMRSTAGKPPERYG
FEDGIEDKNDIANYVSYESLSSTYKAFVASLQSVAIPRDWKEAKRDPKWKEAMLEELAALEKNKTWDLVPFPVGKKVVSC
KWVYTVKQNPNGKIERYKARLVAKGYSQTYGIDYDETFAPVAKMSTVRTLISCAANFEWPLYQLDVKNAFLHGDLQEEVY
MEIPPGFDTAQTKGKALKLKKSLYGLKQSPRAWFDRFRRAMCKMGYRQCNGDHTVFYHHCNNRVTILAVYVDDIIITGDD
TLEIARLKKNLSKEFEVKDLGQLRYFLGIEIARSPKGIVLSQRKYVLDLLNETGMLGCRTASTPIEQNHKLCAQSGDPVD
KEKYQRLVGRLIYLCHTRPDITYAVSVVSRYMHDPRSGHMDAVCRILRYLKSNPGKGLWFKRNDHLNIEGYCDADWASCL
DDRRSTSGYCAFVGGNLVSWRSKKQPVVSRSTAEAEYRAMSVCLSEMLWLKNLLSELKLGGVYLKLWCDNKAAINIANNP
VQHDRTKHVEIDRFFIKERLDDGTLKLSHVASSEQVADCLTKGLGVNECMLACNKMGMIDIYRPS
>Copia-9_DWil#LTR/Copia 48-4085 via tfasty with Copia-6_DWil, 72.8% SW:2810, 2 frameshifts. [Drosophila willistoni]
MQKLCKMASALIKIEPLNAENYDTWKLRMRAILVKNDLWQYVNGSKVCPEAAADRAAWQTQDEKARADILLSISTAELGL
IESCGSARDYWLKLEETFQSKGPVRKASLLKRVALSRMCEGSDARSHINDFFDAVKKLKEIGVTIGDDLLAILLLYSLPD
TYETFRCAIETRDELPSPDILRVKILEESEARQAKKAREEQSALYVNRRKGNDREGSTKRDTRKCFACDKIGHFARNCPT
KARPHAKKEREEPKENKKQMKNEAINIAECAYNAERKSNLWCLDSGCTAHMSSNKNAFDQVQGIDKTLHLANNNTAEVKG
VGEINIEVKEKQHTNGITLKEVLYVSDLRQNLLSVSRITNKGYEVIFRKDEAVIMKNNNQVWFRAQRYGNLYYVNAEEHE
SNNVCDDGNEIDLWHYRMGHLNEVDLKCLAKAGKVHGMNIKENAKLSQCEICISEKQAANAYKSSTVKRSKQTLEIVHSD
LCGPMRTQSMSGYKYFITFTDDFSRYCSVYFLKQKSEVFEVFKSYKSFVENVTGHKIKMLQTDNGTEYRNKGFDEYLNKH
GIGRRLTVPHTPQQNGIAERQNRTLVEMARCMMKQAGAPPSFWAEAINTACYIRNRCPTKGLSGELPYTYWTAKVPSVRH
MRTFGTKAYALMKGKNKGKFESRSEECILLGYSSESKAYRLYQPKRREILISKNISGFKSEFQEFYDEPENGVDIPLGDQ
VDETERSSSSDEDTEEVFQRERRGRGRPKLMRTGQRGRPRKIYQQGRNVSADEHIDQQDELDSAEDIFEECEMAFAVATD
DPVTIKEAQGSGDAENWTRAMEDEFMAQILNKTWEIVERPKGRKVIGNKMVFQTKDNGTPTGRKKARLVAKGYAQKPGED
FHETYSPVARFTSVRLLAALSAEYDMEIHQMDVVTAYLNGELEEKVYMDIPEEFNEFMQKVNSGAPMGSNQQRPDAEYKR
AANQWRKAVTEMRDPVCLIRRALYGLRQSGLQWYCKLTTKLQEIGLEATEQDPCLFVKMIKGKLLIVTIYVDDLLIASNH
PEWLQQTKEHLNKTFKMKDFGAVKTCLGIEFKQNKEQQSVFLSQEKYIDAILKRFGMTDCKPAMTPIEAKSELRSPAESN
EDEMGKYPYQKLIGSLMFLSVTTRPDIAYAVSFLSQFNSNYTADHWKASKRILRYLQGTKMTGLLFRKTGDDLFGVVDAD
WGGNLTDRRSYSGQAFILAGAAISWEARKQRTVALSSTESEYLAMSEAVKEALYLKALLNRIGIECGSVRIFNDNQSAQH
MVKGFGFHPRTKHIDVRHHFIQAMYKSGDISVEYMPTELMAADVLTKGLSGKKHNECIISLGISCN
>Copia-8_TMe#LTR/Copia 190-4419  [Tuber melanosporum]
MSQLLDTQLAGRPTFPLLGDNNFGPWRQRMSDQLKELDLWWIVSGREVAPDGTGMDAAAVAAHDKWLRRCFRITAKIRNA
MEPHICAQYTSDTYDENPKALWDKLAEGYRKELGLELYYFRRSLFDCTLETHGTVAKYVHEIDRIIECLREAEEIIKARE
KTFYLLNGLPASWREWRDLQATVVKPDQPDELIAAIKAREASLNRDREATNDTVLAVGSKGYRGGTGSGYGRSKKVERSR
SRGRSRRDTNETLTCYYCQKKGHKRNECRKMRSDRASGVEQDKANTLTESTVESMSGTVSRSIFTAFSSLTFPASQGQWL
LDSGCSTHVTGMREYFSRYTSIAPGEHKIRVANNVEIDALGTGEITLRVRDPRTKRGKSLVIPGVLHVPECGKNSLLSVS
QLRGSGYFVDFHRTGGASLQTTDGLDVPFEEVNGIYILRGNSAEDKEQAMALEQNTADSEKTGARQAALWHFRLAHLGLD
AVRRLSMEDNAIPRLPVVPRCVCTGCVYGKMIRKPFPSLPASSRASGVLEIVHSDITGPVSPNSLGGAVYLIMFTDDFTR
FKVGYLIKRKSDALKCFKDYKALAEKHHGMPVRRLRTDGGGEYTSNEFTHLLQQEGIEAQRTTPYTPQSNGMSERANRTI
IGMTRALLHAVSAPKELWGEATMTAIYVRNRLPSRALARGRTPYEMWFGKKPSYDNLRVWGCVAYAQVPKEKRKKLDRTA
QKCMFVGYTGTAQQYRLYDPKKRQIILSRDVVFEEATSYYPVETSNGTPQARFYAPMVQPWEEHLAWGDEFDGEEPDFEM
PDRHQSESNEETEDGEDTDGSVDEVREEVVQAQVPGPEAGRKAPRMVRELEADGDSSFWDTRKGKLPVVHEGRRTRSHGA
SQDIGHSANAMIETVYMVEMGPASYKAAMETTEVEQWQAAVDSECASITKNKVLTFVDGVPDGKHAIPTKLILQRKLNPQ
GETARYKARLVVQGFRQIEGLDFTETFAPVASLASVRIVLAVAGARGFALHQMDVVTAFLGSKLEEEVYVKLPYGVLGGP
RLARLNRSLYGLKQSPRCWYSTMDTFLVTKLGFRRGRFDCCIYTHTNGTMLALYVDDLLIAGEPTTVLDVRNRLKAEFEM
VDLGEVAHFLGMVISRDMKERTVYITQEGYIERTLGRFGMRACKPVGAPMERDKPKAGTGDDERCEKALYQQLIGGLGWI
AMGTRPDIAFAVSYLGRFSADPTAHHWACAKRVLHYLAGTRRLRLSLGGVKLTQLTLHGFVDSDFAGDTSSLKSTTGYTL
LLGSAVIRWHSRRQSITATSTADAEFIASASAIQELLWFRELVKEVTQSTLATSVLYNDNQASLSTFKDTTYKPHSKHIG
VRVCRIREVIEDGKEVVMEYCGTEDMLADGLTKPLVGTGHAMFVKLCGLR
>Copia-1_TRe#LTR/Copia 142-4536 [Trifolium repens]
MVRPSQNTVAIPALTDPSQNPYYVHPNESATAALVSPLLDGKNYHVWSRSMKKAVIMKNKLRFLDGSCPMPDDFDPTYEP
WIRCNNLVLSWLMNSVTPAICQSLVYTDSAAQAWEDLKARFSRVDRVRVSSLQREIYALRQESSSVTEFFTKLKGMWEEL
LLYRPIPNCTCTFRCVCESMINAKKFREEDLVLLFLTGLNDHYSMVRSQILLMEPFPLLNSAFGMVIQHENLNSLDTSDD
QASISVNLAKKTYGKNPSFKSDKQCTHCGKSNHTIDNCFRKHGFPPGYRFRDGTVVGSKNQGQVNVNYAEADDSDARSTV
DNRVATFSTEEYQALMSLLRSNTKPVEGPSQVNNITKCIASSYNNAKQGIVPNHLDTWIIDSGATDHVCAALSLFTSYTK
VKAIPVKLPNGTIVTTDIVGNVVLTSELTLKNVLYMPHFSFNLISVSRVAQDLNCVFAFTDDLCFIQNSLQRMIGSGRMI
NGLYYLEGTHSMIQPLSGKQCNSVAIPKTAIWHFRLGHTSLHRLELMKQLYPDIQVNKTDFCCDICHFAKQRKLPYDLSY
SRASTCLELLHMDIWGPFSTPTPHGHKYFLTIVDDFSRFTWIILMKAKSETACKIQEFIQFVESHFSHKVKILRSDNGPE
FISLSKFYLSKEIVHQTSCVGTPQQNGRVERKHQCILNIARALLTQSHLPSTYWGYVVLHSVFIMNRVPSTAVNGRIPFD
ILHAKLPDISQLRVFGCLCYVSTQDSHRSKLDPRARKCVYLGVKAGMKGYIALDLHNHEIIVSRNIHFEETILPYPINNS
TPNWEYMVPPTNTQPSPIAPTQTTNSHETTNNHSTNPHNTASTPTLYYEPPISTYTSDQVFSSSESHHNGNDSLVTLEPD
IASNTEVAPMPAPPSPPTTNNYPPPNPPITLRQSIRTRHLPTHLLDYHCNSIIQKTPYPISHYISHSNLSSSYYTFCLSL
LTEQEPNNYAEASQHDCWTKAMKAELTALANNNTWKIVDLPTGVKPIGSKWVYKIKRKPDGTIDRYKARLVAKGYNQIEG
VDYFQTFSPVAKMTTIRTVLAVASIQNWHIHQLDVDNAFLHGDLDEDVYMKVPQGLEGTTDKQVCKLIKSLYGLKQASRQ
WYDKLSKFLITIGYVHMPSDPTLFTKKTETSFTTLLVYVDDIVLTGDCLTEIQSTKSQLHQTFGIKDIGTLKFFLGLEVA
HSQQGIALCQRKYCLDLLTETGTLGCKPSSIPMDPSNRLHHDDSAPHSNVTEYRALVGKLLYLTSTRPGIEFPVQQLSQF
LDTPTSAHFKAAHKVLRYLKGNPGTGLFFPRNTTLQLSGFSDADWGGCPDSRRSITGYCFFIGKSLVCWKSKKQLTVSKS
SSEAEYRALASATCELQWLSYLLADLHIISDKLPALYCDSQSALHIASNPVFHERTKHLDIDCHIVREKLQGGLMKLLPI
SGYNQIADILTKALHPANFIVYFPS
>Copia-1_TMe#LTR/Copia 106-4683 57.8% sim to Copia-9_SMo, SW:1384, [Tuber melanosporum]
MSLSKFSAAKDDSVYRCKYGEATRLSQLTYPQWSQDLQYLLQGAGALEITLGHEVAPPANQHARLLDFNRRESLAVTFIY
NSCGPEAKAFLRRIPRSPAAMWTALATEFDTAASRAGREGLIREFNRIKCSDYSSVSAYITALMDFKDVLALTDQAITDA
TFISRLTSSLPDPYDTTIQLLHQQANLSVMDYITSIRQYEATLRIKAPEASTSNVAATSGSALYSRVSSTHGGNSGFRRS
GHGLRSRGRSRGRSGYRNSWSRSNGSVGGHADDRSSSVTCWHCGRHGHTRRDCNSRQRGRQAMDAHQKSKRHDSADKNSG
SSQASAMPATADPVLVSVQALLTDVVSLSSNELTVSDTRQAEISNWLIDSGATHHLCRNRDALFSYRAFKPNATIPIHMG
NNSSINAIGVGTVRILFKNNQSHEVLALDVQALYAPNLRSSLLSVGQLSAHRRITFTEDTCMISRLDGGSQIPLGQLRNL
VWELAGPGRAVVTGAIKSPALFLLSRQAHALLANATNISTATDVSIPITLWHQRLAHLNFRAVSSITGLPIGDIPPCHTC
IEAKHQRTFVRLPVARTARPFELIHSDLCGPIGTPSWSGSRYLILYIDDYTRWAYGYFLRLKESIEITRIFQEFQARVET
AFPNWPISRFRCDNGKGEYDNSLFRGILRVGGILFEPAPPYCQHKNGVAERMIRTIIGKGRAILLDSNLPDAMWAEAVET
ALYLHSRSPSTSLGGRSPYEMLHGIKPDLGHLRRFGCSASRLIPKEQRNGKFGPRSRECIMIGYVHDTAKIWRLWDPEFR
AIVRSSDVVFDESRTPGDVKHGPGRDVLKEFVPLVNGVEDDDEIGSVAAVDAKAEELKLGAAKTPMTRGEGSDVPVNPVP
PPNKILVPETGENGDRRVVRKESSRAAMIVEGEKKVRVEHDNLQIGQTTLDLESSSSGPTLPVPKRIKVGPTVQEPEKAG
PMSLGPERLLKRAQESNQMLRRSLRRRQPVQAIAAEAKNVSELRPGDDPESYADAVSHTAWRSAMKQEFNSLIENDTWEV
VSHDDIREAKIIGCKWVFRVKHNSDRSIRYKARLVIKGYEQTEFGETYAPVARLTTFRILIALAAQLGWKIHQMDVITAF
LNPVVNDLVFMALPEGIEWLHPGASPGGVCRLKKALYGLKEAPRLWFSDINRFLQSQGFIPSSGDANLYISSSHKVILLL
YVDDILLASSNPSAIATVKQLLVSRYKMTDLGLSRQFLGIDIEQLPEKIRIGQRHFVESVLRRFGMSDCNGIWTPLEVRP
SLEFKPLVPEDQQLYQSLVGSIMYLMLGTRPDLAFTISVLSKFSASAGSEHLAQAKRVLRYLKQTRDIKLCYRRSETPLD
RSLKGFSDSDWAGDLGDRKSTGGFVFLLSECVVAWKAKKQTIVALSTTEAEYIAASEAGREAVWLRRLIGDLMDTISPTD
SESFSSPTIIYTDSTGGLAQISNVRHHERTKHIDIKYHYVRDIVEQGTVLFRHISTHDMSADILTKPLARDLHWRHMERI
GMETVV
>Copia-2_Ano#LTR/Copia 485-4507  [Anolis carolinensis]
MDDRERMYLLIDDLNSHNFHYWHDKVLILLEYERVLDCIERTCPESNEEAISDWKVKDAKARYLITSSLKTKQMMYVRDC
VTAKDMLDALKRTFGHISKLAAIGLLKRLMKTELNDKKECDKHLENFTEMLDKLKMSGFIIEDFHKVGLLIGSLGNIFDP
FLSSIESNPDITFNLAVARFRDFCNDQHRSSHVDSPKANESSYMASSRHPHRGGASRDSPKGSTCFNCGKFGHIARFCRL
PKKDGTPSGGNKQVKQEKKVFTNKPAGNRQSHKDLMAAHSILTINENKDKEDVWIVDSGCTQHSSNNSENFVELNQGVKG
DLRIANGDLLKIKGSGKCIVKCSLPDEVAVTEISDVLYIDSLQCNMLSVSSMDKKGFAIHFENGQCDITKEGVLYAKAFE
KNGMYELCVSSEQANMVKTHVDGKNLEIWHRRFGHRDANAILQLQKDNLATNLEISNTAFDKCVVCVQQKAVSPSFPVNT
EKRSTKILDLIHSDICGPFKTSFGGNNYAVIFLDDFSKFCVSYILRDKSEAQDMLQRYVAMVKTKFGCTPKAIQTDCGSE
YTSHRTQRFLGDNGIQHIMSVPYTPQQNGVAERKLRSLVEMTRCMLKDENLPDCLWGEAFATATFLQNRLPTKGATKTPF
ELWTGNVPSMKRIKKFGSIAYAYIPKQKRHKLDCRSEQTILVGYAPANKVYRVMNLMTSEVSTRHVVHFDEQSKVNLKGT
VLDFSDEEENTTLQLTESIDDVPTISSIDTLEMSPEFIQRGKERTTDARGSTQTGEPEDDAGELCPGVDGSAEVGCLPEQ
THRYSLRPNRGVPPSRLSYLAESKLSSEPSTIEEIEMLPATEAEQWRKAAQEEIDALHKNGTWTLTELPPGKKPIGCRWV
FTLKRDAEGRIERYKARLVAQGFSQKYGVDYDETFAPVVKHSTIRLLLSIAASKKMTVRHLDVKTAFLHGKITESLFMRQ
PPGFEDKRRPHLVCKLHKGLYGLCQSAKAWNDKLDEMLKQFGSKQGEADQCLYTRTKNGHCTFILTYVDDLIVSTESDGD
YTEVVQHLSKQVELKELGDATYYLGIQIKREEDGSFLLSQKQKIIDLLEVTGLQDAKTVATPMTTDFLRNNEESELLPNN
NQYRTAIGKLLYLATSTRPDISSAVGILSRKVSAPTQRDWIAVKRIVRYLKGTMDLQLKLPVSDKPRLICYSDADWASDF
SDCQSTSGYLFMYGNGLIAWASRKQELVAKSTTEAEYIAISLASDELLWLHQLLTDFGIDEQKPIQVFEDNQSCIKFAKS
EKMMMRTKHIGIRYHTVRKLSQDGMIELTYCPTKEMVADILTKPLPRDGFQDLRVKMGLIV
>Copia-2_DWil#LTR/Copia 154-3837 via tfasty with DM1731, 2 frameshifts. (probably has 70 A deletion) [Drosophila willistoni]
MSALYQIDKLEDSNYDSWCIQMKSVLVHADLWNVASGVLARPTTGENTGWTTLDQKALAMITLSVKTSQLGHVKHCASAH
EAWKKLQEAHQPRGTVRKVALFKKLLSKRMEGQSISSYLSDFKEILDKLAGVGIEILDELVTIILLSSLPDEFDNFVVKG
RQRHFKANCPSVNGRKVASNPNEAVQSSLGLLNALDANCLERSNWCLDSGATSHMCCNRDLFSTFVKHSEKIVLADNNFL
QAEGKGEVKLNMVSRILTLKNVLYVPKMRGNFVSVSKAVEHGSIIEFGQKYARVIQKGECILKADKVGRLYIFGTAPSEC
YAIEQSYEDLWHKRYGHLNYGSLAEIARKDLARGMGTFDSTSLEPCKICMVSKITVQPFPDSTKNKATEILELVHSDVCG
PFDTKSLGGIRYFLTFIDDRSRRIFVYFLKGKDEVFGKFVEFKNMAERQTGKKVKCIRSDNGREYVNKSFDEFLKSNGIL
RQLTVPYTPQQNGVAERVNRTLVEMSRCLLIQSGLHQSLWAEAVYTAAYLRNRSPTRALVNMTPMEAWNGKKPSISHLKV
FGSIAVALDKGHHKGKFDPKGKEYRMVVYSRNAKGYRLYDAETRQVVEKRDVLFDERFGNGDSNGDIVKFDFPYTDDQDS
GSVDAADDFSSTDDSDAEVSEKGSSSEDFDMAVEQKVAEPVVEQRVGPGRPKLIRTGRPGRPKKQFNILSALITSEVLIP
ETYEEALSSPFASHWREAMQKEYDSLMSNHTWQLSTLPEGYKPVGCKWVYSVKRDAKGEVERFKARLVAKGCSQRYGVNY
NETYSPVCRLESVRFILALAAQLKLYLHQMDVCTAYLNSDLGDTVYIRQPEEYATEDKSKVLLLKKALYGLKQSGREWNS
KLDSVLRANGFIPCDNEPCLYKQQAKGNLSLILVYVDDLLIGCQEKSDLDRIKSAIMAAFECVDKGPVRLFLGMEVYRDG
ELGEISLGHSQYIKDLLERYGYAQCRPAATPLEAGYQVACDKMECKRVDATLYQSMIGELMWLALTTRPDILHSSKLAQR
NKDPHNEHLAAIKHVLRYLASTVGFKIHYKQSDAAFTGFVDADWAGDRIDRKYTGYVYFLAGGPISWKSEKQRSVALSST
EAEYMALSTACKEAIVLRRLIIEIGCGEEDTSTVLYGDNLSAQQLAKNPVHHSRMKHVDIRYHFVRQVVNDGQIVLKYRS
TNEMIADILTKNLAKKKHVEFTNLLSIR
>Copia-2_DPu#LTR/Copia 302-4318 via tfasty with Copia-1_DPu, 3 frameshifts and 2 stopcodons. [Daphnia pulex]
MLNGDDIEEWKMSDCYARYLIFNSCDEIRKQALLNSRTSHEMWTRLETQYLQRAADNKHLLHRDFLNLRYSNLLAHLCxA
ETNNCLSNSTRRPKPNEDIMIHITALESMATELNDLGVHVTEHDLITTIMCSLPARFGFLSSCWDNVPDNERSMDALRAR
IVSEQRRIELRRTEEEGFKPLTNTPEGTALQAYGGQKGHFPRAFRGSRGRGGASRDIINRDTAKCTYCGKPRHYEFECRT
RIANEGDKQTTSFKRPNNDGDGSGPSRKADFSFISVCYLTTTDPDALYLDSGATRHMSGVHSYFQELRDIPPNSWPINGI
GGTVLHAKGVGTIKLSSHVHGETINGSLKDVLYVPGLGVNLIxVVCLSINGYSVSFHGLEACIMRDNTVIMTASRSGETL
YKVNAVVSTPSTMGLAVATTQATLNTWHERLGHVNRRAVLRMASGIGVTGMDISPRSTTLNECCHGCEVGKMHKLPFTKS
QSSFSAIGECIVSDLVGPLQVESIGGARYYVIFKDVFIKYKTAYFLKQKSETADCFLAYVKKVHTDTNQRVKMLRCDGGT
EYNNRYLKTSLENLGIKLQTSAPYTPDQNGIAERDHRTTVESARSQIHARGIPLKLWAEAINYSVYVLNRTLSNTKSVTP
FEHWYGVRPDISNLRIFGSVSYFLVADDLRQKLDPKATKGAYVGESEEQKASRVFVEATGRTHITRHVRVYENIPYWSPV
IEPASSVAEPLPSPLIDDITPETTIHPATSDPALGTKTKLRAVHLPVRKSARGLIPKKLFPMDMDCAMADTHPRDASMYC
FISMALKSSSLYYEPKTFREAVDGPEGTLWKQAADNEMSSHIKNETWTLVPLPPGRECIPSGWDFKMKTDRSGLPCRRKA
RFFAKGYRQVKGIDYQESFAPVVRYDSLRVIISIAAHRDLELIQLDVTATFLNGVIDELVYIAQPEGYVVTGRESEVCRL
NKGIYGICQASRIWNKTLHDALIDYGFTQSSADPCVYHQITNSHYLIIAVWVDDGLVAGSSMDVVNEVVRFLNGRFEITA
IPADLFVGIVLTRDRPNRKIYMSIPQFIDKIMAKFNFSDAHPVSLPVLKGAPRLSRDSSPSSPADIAAMSTIPFREAVGC
LMYAALTVRVDIAYKASQLAQHCKNPGMEHWKAATRVLRYLSGTRDHGLCFGGNGPTRQALVGYWDADYAGDPNTRRSTS
GYLFIFNGAAITWSSRKQPIVALSTMQSEYIAASDSTREAVWLRRLLDNLGESQMEPTCLRCDNESAIGLAYNSLAHKGS
KDIEVRYHYIREQVADGTIDVEYVDTKNQLADVLTKAVDGETFSKCLSGFGLARVPKELG
>Copia-1_PSH#LTR/Copia 65-4786 62.2% sim to Copia-2_SCH, SW:2144, [Punctularia strigosozonata]
MSDNDSPSSHTRATSDRSALTPRPITPDPSQASRSVSPAPIPTIVLPDTSATMPSTASTASTAAKYTEIARITNASGFHD
LPEERRLSLAAGNWVAFSAQFLNELGCIFLRDYLDDTDAPPCPSVDEALADVTLATIRRAFRHNDGLVKSLLWRNVSPED
REIIDSHDTSLAAWKALRLRHQAVGDKLKAEIWIGLFGTTFSPGPDQTASGTIASIRADARRLFEAGLPTTVEDIVNIVC
INALGANFPDILANVTHNLASRKVPTSEIERSVLDRQKPSALVNAVRAQSTPSHAKASVSGNGKKDARRHNHMFSNYWCK
VCEASPCAKKDQPGATPVARNGEPMKLSNSSRNTSTAVRAHAAVMQGQDGKFYTFTEVPSMPNSGSSTPTPSFAAAAAVS
DWPTQVAFATTPDDPFLLDIDAGSWSEDDFGDCGFTANVVHTTSVDWLQATAVDVTPTPPAHAMSAEDRRLANIDSNLSA
SHEYILDTGANISLTKFRHLFESLRPLRVAIGGFNGSKVFSSGVGTMRIPLPGGRQMLVDNALWVPDTTLTLLSVGRLCD
QGYRIDFSSGHADVYWKLEPSPVARATRKNNSLYRLDGTEPCASPSTRTLAPVAASAVPLTTWHGRFGHANYGALSQAAR
AGVVDGMPVSPSTSAPPSCDHCILGKQSRAAMPKVREGVRAAGILDVVYIDLQGPFHVRALGGYFYLLDIVDESSGYIWS
LPLARKSDSTPALKRWEDEIFRLTSTRVRTYRSDNGREFDSEAMRAQLASGTSQQFSAPYSSAHIGMCERAHRTIMGRGR
ACMSAAALPPCLWAISMQTAAYLSNLTPTVSAGGRTPHERFFGTKPIVSHLREIGCRAFVLIENVPNPKILPRSKECVLV
GYSPNSKAYLCWHRASGKVLKSRNVSFIESHQLPRMAPVASPTSRSSESTDIPAASPTIDHDDIFAADSLPTVLPAESRR
TDPSPNPTPPVRRSTRERRAPGDVNRLADTVSEIRASADRLRTARVTPTVEEERSDVAAHAAVANLVRDAMAHAASSDDP
AGPNLSAPDDPRTAREALARDDGPKWRESMDSEMASLRKLSVYELVPRSEVPRDERIMRTMPVFLLKRDSSGEPERYKTR
VVCDGSRMTQGVDYDKSTSPTARLESIRVVLHVAAHFGWQTAQLDVKTAYLHGVLDKPAYMYQPRDMEEPGRESHIMKVS
KSLYGMKQAGRVWNKHLHNQMTDWGFIRLDAEHCIYFHVSADGTLIAAVYVDDFAITGSNRAEVGAFVETVRPVWEIKFG
GEISWLVGIRVDRDYEMRTITLSQAALIDKALTLFRQEDARPVSTPLPPGTKHSRLECPVTAEDKAVMAKYPYRKVIGTL
MYLAIGTRPDIAHAVQHLSQFLANPGLAHWRSAMHVLRYLKSTRDLGLVLGGKEEFRLTGMTDSDHANCPDTRRSVSGYS
FSLGSGSVSWSSRKQPTVSTSSCEAEYVASCSATKEAVWIRQLLAGIGLPQAGPTIIAADNQGSNTITEDPSYHGKTKHI
DVQYHFTREKVAAGVVKFVYVRSADNIADIFTKALPFPAFSRLRSLLGLQKIML
>Copia-1_AM#LTR/Copia 302-5308 53.6% sim to Copia-72_GM, SW:1047, [Allomyces macrogynus]
MTVTMTSSVSVKTPISGQPATIEMLKADGSNWPTFADRFLGFLTADQLEDLLELKSFKILVDADFEVVSLQQQEEMTDAQ
FKKLIELDSDVKFVADAIFWNGPAGAERKKCMAHNSYKAKSCIRSIIKVVLPSAVASELLPVFSDATCVADAWALLRARF
DKRSAQAHLANVKGLFTKPMSGSGAAAVREHIADLQRRFDVIRRHERAKSSSHLRTDFADSFLVLALLSSLPPEYSPTVL
SLGERYEEMAIVELQTILEGAADQLERSSGTETQALVVTKRKDTNACHNCGKIGHYVRFCPNRDHQRKNGAETANWRKKK
GANVVAKDGDEHAMVHLSVDEYERLMASARGADAAGVVFGAAEFDGFAHYPIVALCPEIVRLERQSHQGMATLPGTYPPI
IHVDASNYEGPDPHHHRAHALMPLSARARLAQSPKVDSAAGAHFCGDKSLFATLNDMRPGEGFLVSLGDHRVCRPIGKGT
MRIRTPSGNIVHLDPVWYIPGFKTLVSVSELYDRTAVRVIFGDRDVQFVHCETGDLLAKGMRHGDTWIVPGVCEKGPTKD
ARVLDVWGKRPVGAHVADAVKKVSLAELWHARLFHVGHDRVSAVCTLEHGIKDNVGVAKPLHECMTCLVANAHSQPHPLR
HLRANRLFGVLHADLVSMKTVGMGGVNYFATVTDEYSRWCFVLLLRRKGDFGPQFLDLLKHAESFFGVSAGRLHSDHGGE
FIGNSLRSILLSRRMHLSTTSPNSPESNGLAERTQGVLKSMVRAAMTAAKAPDSLWPECVRAACYVRNRVPSDSLDGRSP
YQVVFGASPNMSKCKVWGSLGGAVVPTTQVRQGASGFAAGVAVRLVGYGDELPWVTRDGYRVWDGQKVFVTRDVKFAERL
CVAESRVVAGAPRTLPSAKVKVGSPVRVDLGSLDVPSTVFDGVGGDEVVDEEIGRGARRDQVQVPMAVPDQLPAVNLIAE
LPLAGPALERDNLQVGERPGLPQVDQGPVGVLADVGEPGRQADAPEVSNGGVGALRPDAQAPVARQSRRLRGLQPEVARR
FDPDAIARVRSTPDVGEVDPEPKRGVERAADAVEKVRVLRLNSDCTDASAPLVRSLAGPGVDSGSPLSGIVDLDLPTLFL
RAHPDSDLSKFVESASAVLACVAAAQVGAQGAVWEPKTVEEALAHPDWRAPTFDEYNSLVENGTWVLVNRRPGNKVMRSG
WIFKWKLGADGKPVRAKSRLVAKGYTAIPGVHYTDTFAPVASFDTLRLILSLAAYLKVLPLQLDIKTAFLYGYIKERVLM
EQPPGFVDKQNSDKVCMLVKVLYGTKQAPRMWFCRLADYLILLGFAESKYDKCLFMHKTDKGVIFIGVYVDDLPIVASTK
ELRKWIVDKLKSEFKVHDLGDAAWLLGCKITYSDEGSIYLDQSQYVKSMGKRFQIPEKMRPVIPMRPNDFKELLELPKII
DPVVKTEYLAIVGSLLFAATKTRPDIAAATAILGRFMHAPGTLHLEAAKRLVGYLLGTLNLGIKFLGKDMKLDAFADADW
AKDRGDRKSTSGFVIRVGGSPVAWRSKKQTLVAKSTMAAEYVSASLAGDTILTIRALLEELGYKQDGPTPLMEDNESAER
VAKDALLSSKHVEIHAHWLQDQVAKKTIDLRRVDTENQIADILTKPLAAPAFRKLRDMIGVAEVIAPRA
>Copia-1_ACA#LTR/Copia 295-4250 via tfasty with Copia-19_DPu, 2 frameshifts and 2 stopcodons. [Acanthamoeba castellanii]
MIKGLETNPWKMMATLDVNLALKANVSKLTLLTQLINIKRETGEALNSYFGWIVDINMELVNNDLALPEVFILMVILNGL
LVEYNTVWPVIEVQTKIDLHDVMSRLCDCEVNLNVCSEQNEAANAMWRDKPDRARGKRGGEGHGPSKQDKGGERHGHSWK
SSKGPKQGPQEGDETTCHYCHKPGHWRNKCPKLNWGDSGDGGGGGGDSHKVNATWAQHKSDKDEEIVLSVADQVNAVANE
TNQWYLDLGATCHVTCRRELLHDYQPTLSSPSHMRLCGSSRSTVNLVLGDNFKCCVKGTGTIRATIVIDGTMKTVVLMDV
YYAPELAKNLVSMAxIAKLGCTILINTAGCRVVDGRGRVVLQGTARGNMLVLPLDPLLLERAYATRVDLSLDVLHRRFGH
ACERRLCTMLKAKGIMPATKSLLPCAICVKNKTMRKPICKGPAVRSTTPMEQLHTDVCGPFPVATKTGKRYFISIINNTT
RFAIIIAICEKSNIEAMLRSHLAATPADLKCQRLRSDQGSKYTGKRVQELLRAAGIVHKATSSHTPEHNGVAEQFNRTIV
EMVQCMLHDSGIAQCYWGEALHTTTAIYNHLPTNANDSTSPLDRWDADHAGALEDMHQFRAKVEVLVPPGERTKLSARTR
TRVYLGPVDSGTSNHQVLVQGHILVTCEVVFPYDAHDVLMGNNMSITVAPAVVNPLAKEANVGSAPQWASINQSTTPAPS
VLGASGSAKTSPPRSPSQVELSVIKRTPQGESPMQVEPLDPLTPPDMPVMDDDPALKESEEEEHAAPPSLEADNVIVVVK
KKWPMLKKPLAHECKKNTKFYNDDFHAFAAEVLQALDVSDSACTPNSYDEAVALPEAAEWIKAMKAEYGALDHNGMFELA
LLPVGLRAIRLRWLFKIKHKASGVINHLKARWVRKGYTQRLGIDYNKTFSLVVTMEHLxQLLTLTMILNLEVHQMDVENA
FLNATLSVHIYIEQPQGFLNLERPDHVCLLCKSLYGLHQALLEWNRMMDRHLCSHHFLPTHTNPCIYVLQESSALVIITV
YINDCVIVAPLEHVEHTKTVLHDSFRMKDLGQARSILGMEVMCDCEEGALYLCQAGKIMEILHNFSMANVKSISTPMDPG
LILHKLNVTAPGHLRKPYQSVVGRLSYLSQAMCLDIVFTVNVLSCHVNSYNQSHWGAIKHILQYLRTTKDLAIKYATSGS
CSQSGGLLPVGYTDTDWGGDVETQHSMSGIFFTLSGSPIQWGAHTHKCIATSTMEAELNTIAETTFLCESVSKLNIEFKY
LPTEVMPGDVFTKALGRACVVELRSLINLVELKIESKG
>Copia-1_BRa#LTR/Copia 63-4342 via tfasty with Castor, 83.2% SW:4761, 1 frameshift. [Brassica rapa]
MSSSPNTTEAISLNPNTLLHINMSNVSKLTSTNYLMWSLQVHALLDGYALAKHLDSSPVVPPPTLTTGDDVTENPEFVCW
NRQDKLIYSALLGAITQPIQPTVSRTTTASQIWEKLASIYAKPSRGHIKQLKDQLKNYTKGTKSIDEYLQGAVTKFDELA
LLGKPYDHEDQIELLLGGLPEEYKNVVDQIEGKDVAPSVTEVHERLLNHEAKLLAVRDTTASVIPTSANAVQHRHNYSTN
RNNNNNNNRRYNNNSYNSDTTQQRSDTRPFKPYLGKCQFCNTQGHSARRCPQLQGLQPALNQQATSPFRPWQPRANLAMN
SGYPAANWLLDSGATHHITSDLNNLAFHNPYQGGDDVLIADGSGLPITHTGSSTLSTPTRDLSLKNILCVPHVDKNLISV
YRLCNTNGVSVEFFPAAFQVKDLSTGVPLLQGKTKNDLYEWPVHNSYPMAMLTSSNPKTSISSWHSRLGHPSSSILNTIV
SQFSLPIASSTQKHLSCSDCLINKSHKLPFTNSSILSSRPLEYIFSDVWSSPILSVDNYKYYVVFIDHYSRYTWLYPLKL
KSQVKEVFIAYKALVENKFQTSIGTLFSDNGGEYIALRSFLSTHGITHLTSPPHTPQHNGLSERKHRHIVETGLTLLSTA
SIPKKYWTFAFSTAVYLINRLPHPTLSMQSPFQILFGVAPNYEKLRVFGCLCFPWLRPYNAHKLQDKSQPCVFLGYSPTQ
SAYFCLDRTTNRIYTSRHVQFVETLFPFQEKVPVSDPQPTSTPPAPASVATTIPVNNVMPQQQMGPVPETLHPTAPPPPQ
PQVLPSHSSPTSSSSSSEPTALSQNESQTPIQPNLAPSNEPTAQEQNELQPPTQQTQQENISQTQSPMSVQPIEPENPAP
ENHQNIHKMKTRAKNNITKPIQKLTLHLAGPKHQSPEPTTIIQAMKDKKWRDAAIAEFDAHIVNHTWDLEPPSPDQNVIG
CRWLFTTKYLSNGQEERRKGRLVAKGYTQRYGVDYSETFSPVIKSTTIRLVIEVAVTKSWTLKQLDINNAFLQGDLTEVV
YMMQPPGFVDKDRPDHVCRLRKPIYGLKQAPRSWYLSLRHHLLTIGFINSTADASLFVHTHGHIVTYVLVYVDDILVTGS
DPAVVQQVLQSFAERFSIKDPVDLHYFLGIEAVRTPQGLHLMQRKYVNDLLSKQNMVDAKPVSTPLPTSPKLTLSGGTLL
TDAAPYRSLVGSLQYLAFTRPDISYAVTRLSQFMHQPTMEHWQAAKRVLRYLAGTRSHGIFFHKNSPLALHAFSDADWAG
DTDDYVSTNAYIIYLGRNPISWSSKKQNGVARSSTEAEYRAVANTASEVTWLCSLLSDLRIDLPTAPVIYCDNVGATYLC
ANPVFHSRMKHIALDYHFTRNMIQAGQLRVAHVSTRDQLADALTKPLPRNHFHQACSKIGVTTAPPS
>Copia-1_HAE#LTR/Copia 5-4247 via tfasty with Copia3_XT, 84.2% SW:4728, 2 frameshifts and 1 stopcodon. [Hyaloperonospora arabidopsidis]
MSPSSADSALDTDFAFNIDASTTTTARINKFDGMSFHTWKFKMRMVLEERDLWEVTSGEIKMEQLTSALDQATFKRKSRK
ALAMISLAMEDSQLPMVRSASGALDAWSRLEGHFEKKSLANKLFLRRRFFTTKMEEGDDMLAHTNKLRTLAEQLDAVGAP
VSENDLVITLLGILSGTYQFLITALESRSDTLTWELVTYRLLHEDMKHKEQCSDGVAADQAFMTSDKKRSGRPGKKTGAY
NYCGKMGHWIAECPSRIHDNADRQRPQRANVVRNQDDDSGDFLFTVGNVSSSESKNTAWLIDSGATQHMSYSKEFMINYK
IIDPVNVHLADDGVVEAIGSGDVVMTMKTPSGIKKGMLTNVWYIPKLSRNLFSVGRFTKDVAPMTFNTSACFVNLNGQKW
KVGKRAGKGLFQLSMTPVNPELENIASAAAVNLRAGKSYLWNLRLGHIGHDGLDAIVKKKLGVGIDITSVNKWELCNGCT
LGKQTRSKFQLNAPERAKTMLEVVHSDVCGPMQTATFSNKRYFATFIDDKSRFCVVFLLRSKSEVLEKFVQFVKFAxTQT
SKRVKVIRSDKGGEFASGKFAAFCRDRGIVQKFTPPYTPQLNGVAERMNRTLVESTRCMLEHADLSKEYWSEAVRTAAFL
RNWCPTRATGNDKSPYEFWTQKKPLLKNLKVFGCHAYVHVPRERRSKLDARSVVCRFLGYSDYEKAYRFEELSSGRIVVS
RDVQFMEDTFDSGKRTQVGSNAVGLSYNHEDFDDADGYSGGNSSDHDMGGQPSVAVKAPQQPVVPRPLNERPQWKQPNNF
RQQPLRSQMQPTVEYQPGSKRHSRTHSLEAMSEPPVDKRYGRSGHTGGTHSTAAPGPRSSFHDMSAHLASIQDEDVENEC
SRVVYSVGDLPMSFESAMESNNADKWQEACHSEFELLRKNETWELVPLPRGRKAISSKWGFKVKENQDGEIERFKARLVS
KGFLQKYGVDFEETFATVAKFASIRIILSLAAQYKLVLHQIDVKTAFLNGFLEEEIYMRQPVEFVDSNHPNHVCKLKCAL
YGLKQSPRMWNQTIDDFMLKIGLTKCEMDHCVYVNRDGLAMMFVVLYVDDLILACNDINFLSATKQALSERFKMSDLGEL
KYCLGMEVERDDKSGDVSMRQTKFLQSVLTKFGMEDCKPVKTPQDPGLKLTKNVCGGGCIHDETMKGVPYRNAVGAVMYL
MVGTRPDLAAAVGMQSQFAADPCPTHWPVLKRVFRYLQATPIHGIRYLGSDNSELIGYSDADWAGDIETRYSTSGYVFLL
NGGCISWRSKKQRTVALSSTEAEYMALSEAIQKAVWLKAFMRELGKEAGNGAIKVFEDNQGAIALAKKPEFHKRTKHIDI
RYHFVREKVEDGQVELEYCPMQDMLADLMTKPIAAMQFDALRTRLGIQVAAESSG
>Copia-1_FCy#LTR/Copia 2440-7002  [Fragilariopsis cylindrus]
MPYHPYDTGWIRTIYSSICLGWFLLSTGLLPRFTCYSLYNNVWITYCKIIAFMCEEIGNAVITLGETIMEIDSIVFNKIN
YINPIYNVFQRFEHMLSRLNIFTHPVIGMRPKPISRKHNSKNNKTSSGSHLHVFFARKRSRKRHSVISGPIPHSANGNSR
TKDRTNTGSSTQSRSEHRTKVPRIPSDTFVSASTIYPIDDPSCQDISWYDAISPYWTGGMIWDGAYVLNHQVVSVTTDPI
FVSDLLPAFELSATIQTPKARSGGKHVGPRTTIAIDSGSSIHIFKDAFLLADIQADENSSISVRTTDSKFQIKDIGRLCD
DLDTLPLPSDGYYFYPNGVANLLSLAMLTDTKRVVMDSAIDNAIYVFNDDGSYVRFGKTSNGMYCIDITTDDDHHIVMAH
QTVKGESAHFSAIDCRRAAKVRDLQEALACPSDFDLANAIEHNVIGNSPFTRRDVRIAKQIFGPDVPAMKGKTVKNKSIM
PREDDVTDIPSFIMKEYSNIHLAIDIMHINGIKFLISHSKHIGLIQTYCVRKNNRDAILACILKIIQTYKSRSVFKVVTI
EADGAFECIKHELQDKPYNITLSTCDADRHVETVERQIRFLKERIRAVRLMMPYKKIPKRFTVEMVLRVTMLINSLPKQN
GIHSILSPREIVTGKKFRCPTVKVGQYVQGHTGGTNSTDEERSIDALYIGRADNGSGHVVFKLSTKQPVSVNRVTIIPTT
EALINTVNEIAEQEKQPEGIEFADINGRVTLDDFAANVINDDDSNASDVDFKMDEEYREELKKELKLEAKDKTVDESDPD
SKGFGGDEPDSQIDFFQNPIQQHNRDTLNENEDAPIILDSRTRSGMNLANSTSKQECGKDKKKKKRTIFENDTNLIEDDL
EDDDMMEPTITSNDDIITNDTSEEEEEDEPSAPRELDSDLGSYWNLAHSKQACVLSTIASYSHVEASKSTPQYGFNRGLK
EFGAMGYEATMKELDDNLLGMGAVKMLRPSETSSSIRFEALNYLMFLKRKRCGKIKARGCADGRPQREYISKDESSSPTV
SIYALMTSCLMDAIEGRKVATCDIPGAFLQADYPADKDCYLKFEGAMVTMICAIDPKYKQNIVERNGKEYLYAKLTKAVY
GTLLGAILFYKKLSKQLIEWGYEPNCYDRCTFNKMIEGNQCTIQFHVDDLKISHMKQSVIDSVLDDVNKEFGTVKKPLSA
TTGDIHDYLGLTIDYSEKNKVKFTMYDYLEDILAEMPSDMNGTAPTPASNNLFDVDDDSELLNEKEADFFHRSTARLLFA
AKRARPDLQVAVAYLCTRVKAPTRSDYRKLTRVMKYLRLTISIPLVLGWDGSGKLLWSIDASFAIHKDMRSHTGAVLTMG
QGALMSMSLKQKINTKSSTEAELVGVDDAMNFIEWIQLFVGEQLKSINPDSILNKIGSDVVIQQDNTSTIQLENNGQASS
TKRTRHINIRYFYVTSKIKEGSIRVIYHPTKEMVSDYLTKPLQGSLFRTHRNSLMGHDEDSIARYDQEYNDAKAAAAKDL
S
>Copia-2_TCa#LTR/Copia 158-4010 via tfasty with Copia-24_SI, 75.0% SW:2907, 1 frameshift. [Tribolium castaneum]
MADGINLSAINKFDGNNYKQWRFQLKCALKAKGVYSIAIGEIEKPSANRVEELNTWNKKDAIAMCVITSTMELSQITMIE
SCDTAKEILDKLDAIYDIKTETNKMLIHEEFHQYKMCLNDSIAQHISKVENLARRIRESGDNISEVAIITKILGTLPAKY
RNFRQAWLSLAEDKQTLSNLTSRLIDEERNLTTVETTENALVTTTRVVPNKKTIRGKPRITCYNCNKKGHISRECRAPRK
THVTQGHSGAFLIEDVNEIATKIQEDEAWILDSGASAHMTSRRDMFSTIQEVDEFSVKLGNGSELKVKGKGTIEIECWLE
NEWIKNKMTDVWYIPNLKRNLFSEGQITKKGMTITKENNKAKIVCDGVVKACAVRQSNNIYKLLIRCTTKTSEVNLTATR
SLQTWHQRLGHINMKTIQEMAKRGLIDAHGTTDDEVNQICEGCRYGKQHKMPYHKIEKRNYKAGELIHTDVCGPMSVDSV
GGCRFFILFKDDSTNFRTVYFVKHKSDALDCFKQFYYMCKNKFGHPIKTLRADNGGEYVNQEFHKFLKDRGIILETCAPY
CHEQNGKAERENRTLVESARSMIFTKNLPLYLWAEAVNTAAYILNRTTNSINQEVTPYELWTNKTPDLKHIRIFGSDAYM
HVPDNLRKKLEPKSKKLILVGYDNDSTNYRLFDRATRKIKIARNVTFGEDNELTLPRANKIVITDEIHDDERNLEHNNQN
DQTKEPEEEPVPETEDRRGYNLRPREILKTPNNLDDYVINIVEGDTPNTYDEAITSSESEEWRNAIQEELDALKKNDTWN
LVNLPVDKKAIGSKWVFKIKRSPNNKNIRYKARLCAKGFAQTEGVDYNETYAPTTRYDTIRILLAVAARENYQMIQFDVK
TAFLHGELEENIYMQPPPGLSVPPNSVLKLKKSLYGLKQSPRCWNRKFNEFLELFGLKQCESDKCVYTGKFNEQLMILLL
YVDDGLILAKDMDTLHKMGNKLKSAFEVTICEPEYFVGLEIKRQSDPKVGKNSIFIHLSNFIDRIIDRFNMNDARTCNTP
ADPNAILSQSDPNEPKNNDVLFPYREAIGCLMFAAISARPDIMYAVNVVSRYQNNPTIAHVNAVKRIFKYLKGTKELGIL
YNNSGKLIGYSDADYANDIDSRKSTSGFVFKLGDGAITWCSRRQRCNSLSTTEAEYVAASEATKEAVWISGLLSEVGEKC
GGVALCVDNQSAIKLVKNPMYHKRTKHIDVRYHFVREKYENGDIVLKYVPSTEQVADVFTKALCYAKFNVFVLNLGMLFI
SPTV
>Copia-4_PD#LTR/Copia 258-4228 via tfasty with Copia-83_PT, 88.4% SW:4946, 2 frameshifts. [Phoenix dactylifera]
MEEHSSGSMVKLTSSNYSIWKLRMEDLLFCKDLYDPIEGDSAKPSDKTRQEWEKMNRKTVGLIRQWIDDSVFHHVAMETN
AHSLWKKLESYERKTAQNKAFMIRKLVNMKYKEESSVAEHLSRFQDVVNQLNTMKMMLDDELQALLLLSSLPDSWKTLVV
SLSNSAPNGVVTLGMVKDSMLNEETRRREHGVTTQSEALVTERRGRSKTRILQNSNNHDKSRGRSKFRKEIKCFYCGKPG
HMKRECRKFKREQSRGRGEEKKEENDTTTVASDGDVGIICDDACVNLTCQDCTWVVDSGASFHVTSRRDFFTSYTSGDFG
SVRMENDGVTKIVGMGDVCLETGIGCQLLLKNVRHVPDIRLHLISTGVLDDEGYHNHFGEEKWKLTKGSLVVARGKKSST
LYMMQAKLCKGEVNAVEDSSIELWHKRLGHMSEKGLNILAKKKLLSIKGTPLKTCTHCLAGKQHRVAFHKSPPYRRSHVL
DLIHTDVCTMDARTLGGALYFVTFIDDHSRKVWAFALKFKDQVLDVFKHFHASVEREMGRQLKCIRADNGGEYRGPFEKY
CRDHGIRLEKTVPKTPQHNGVAERMNRTICERIRSMLSHAKLPKSFWGEAMRTAVDLINLSPSVPLKGDVPERVWIGKDV
SYDHLRVFGCRAFIHIPKDERSKLDGKSKQCIFLGYAHEEFGYRLWDPVDKKVIRSRDVVFLEDQTIEDFEKVEKPKSVS
RNYVDLGPVPPTMMNDDNRKDVQEDDGNTVDEPTPDNDVPDEHVEQASPEPPVEPQLRRSTREHRPSQRYSPHEYVMITD
GGEPECYQEAINHEQKREWLKAMQEEIKSLHENRTFELMELPKGKRALKNKWVFKLKTEEKSSQPRYKARLVVKGFGQKK
GIDFEEIFSPVVKMSSIRVILGLSASMNLEIEQLDVKTAFLHGDLEEKIYMEQPEGFIVKGKEHLVCRLKKSLYGLKQAP
RQWYKKFDSFMMDHGYSKTASDHCVFMKRFSDEDFIILLLYVDDMLIVGHDAKKIESLKRELSKFFAMKDLGPAKQILGM
RITRDRKNGKLWLSQERYIEKVLERFNMSKSKPVCSPLAGHFKLSSKQCPTSQKDKEEMKKIPYASAVGSLMYAMVCTRP
DIAHAVGVVSRFLSNPGKEHWAAVKWILRYLRGTSRVCLCFGNGKPMLDGYTDADMAGDIDSRKSTSGYLMTFSGGAVSW
QSKLQKCVALSTTEAEYIAVTEACKELLWMKNFLQELGQEQEKYMLYCDSQSVIHLSKNPTFHSRSKHIDVRYHWVRDAL
EMKLLRLEKIHTDDNGSDMMTKILPMKKIIACREKAGLVEPPT
>Copia-4_DWil#LTR/Copia 91-3619 via tfasty with Copia2, 3 frameshifts and 2 stopcodons (several deletions). [Drosophila willistoni]
MSTQFSIEKLVGENYSVWSVKMKSLLIHSDLWSVTCGRLKKEASDTTEQKELFDSKDEKTLASILLCVSPSQFNGIKHCK
TASEAWAKLSAIHMPSGPARKIQLFKQLTDSIREHLNNFSNVVEKLNEIQEQVPDEMLVIILLASISEDFENFVVAIETR
DSLPSLSALRIKLLEEGERRKIGEVAEKSENKMYSSRQENGKEYKAFREPKNIECWLCGRRGHFASKCGSKERKDNASEK
NSKKSFSVFSTSGTKIGLSKNAWCVDSGATAHLCADKSMFTSMREHKEKIKLAGNSYIEAEGCGTVELKCKNITIELVDV
LYVILQCNFISVSKAIENGLKVIFVKNKVFVKDSNHRDLMIAEKHNGLFLFESKTKTVFAAETNVNQLVKWHDRFGHLNF
DSLNKMIKQKMVYGLNAKVYSTNDLVCETCAKSKICVKKFPKFSESRSKELLGLIHTDICRPMRTASQGGARYFATFIDD
KSRYVSVYMLKNKSDIFQKFKDFKMLAENQTGKRKKAIRSDNGREYLSDVFEQFLSSHGIKRQLTVPHTPQQNGVAKRAN
RTLVEMARSMIVHAGVGESFWGDAIMTAAYLRNRAETATLNFETSSxKSWSTVENHHVSQMWxSFSQVKNLIACIMMKSK
KILRSSQFQLLMSKVVTKKMLRRSNHISEEDQGDQRLFALGVLVVHEESTIWLNVLDAKDVIVPTCINEAFKSEQSENWK
SAMQKEYDNLENIKTWSLVDLSANKKVIGCKWVFTTKRDESGKVQRFKARLVAKGCGQQYGINYKETFSPVARYSSIRLV
IALAVEHEMHLHQMDVSAAYLNSELQDDVYMRQPEGFVDADHPKRVLKLHKSLYGLKQSGREWNQKLDSILLKIGFVPCA
SEPYIHEQSNGYLCIIVVKVDDFILACTRKDDVAYIQQYIEGLLHEYGMQDCKPNATPLEVGFQTKCDSDDCGQVDKTRY
QSLIGSLLYLALTTRPDIIHSVAKLAQRNADPHKEHEVAAKRVLRYLRCTSDVRLHYSKTGVPIHCFVEADWAGDCNDRK
SFTGWSFLIARAAVSWESKKQNLVALSSTEAEYVALSTAAKEAIYIRKLINEMGFGPMAKLLIYSDNQSAQCLAKDAKFH
SRSKHTEIKYHFVREMYKENVIDIKYIATDSMTSDILTKNLCKVKHVKFTEMLGLK
>Copia-4_PIT#LTR/Copia 120-4611 via tfasty with Copia-97_Mad, 57.5% SW:1127, 1 frameshift and 1 stopcodon. [Phytophthora infestans]
MSTSSGGQQQPAVGQQQNQQQQNAQQQGANGGARTRRVCGSKPPKYTEAGGFDLYHAQIEGYLAQHGCWQVVSGNAVDDP
NDPQWIERNQFARCALLFGMLPKDSKKVCRMATAREMWTSFEQDKTKRAYASEIRLRRDLYAAKFTPGDDMEKYLERLDD
LRRQLANMNAEVTDNEMVNIVLQGVVDSHRNVVRMFNRNNNGGVAPDLATVVNVLLGEAETDRACAANANNQVETVPVTK
VMSQRPAIQNTKKRFNKKGGSGKKVTQENRKCFFCKKKGHLRADCYGWKALQKKNGSSSDDTADHEGREVTSMRMVWSGE
LGDTDNPPVAIRMAWPSDKVGFEVDPVHDWMLDSGAGAHVCVNGASFSKLVKDPLLTLDWQGGLKTNELSGPIKLEILNG
KEVDLPGVRYAPEGVTNLISQRLLEQSGWRPSYSDTDNERLRCKYFDKDGIRLEFKKKDDGFYWMKASPIVSVAMMAVRH
GKTLENSAVMKWHLKLAHLNEKNGSGxITEGMEGLSLNDFKRTPLKCIACDAAKMKRMSFKRQQGKRSTECGARLMSDVC
YVGITTPGGAKYFQLVQDEASRFKWVFLLQKKSEAAENVMNLIRQLEKDFKVKMFSCDQGGEFLNRALTTFFREQGIKLL
TTNAYTPEENCLVEKLNGKLLSKVRAIREAANLPACLWGEILHYVVHVDNRSVTKALTNMTPYEKLWSRKPDMKDLKVCG
CVAYHHLPKEKQQNKLEMRAKPAIFLGMAESTLGYRLLDLQTGDILQRRSVRFHEDVAVGGDYVEKLLGQRYYGKNTAAP
LEISYVRLPVKRVAVIDNMPQAIEPSVVNVDPQAIEPSVVHVDEEAKRPVSIDDDVSMSSSDESDWECVETIEADGGACC
ATNAPNQNVNLEAQIVQPGGSVIVDGGHAATAPRRSGRQRRSSNRYNPNMWVMSMTLMQCMLIGVVNDILNPTTRKEALA
SEYAEDWRHAMDLEHEALMKNETWDLVPRPKQRKGRRRANILTSVWVLVVKRNEKGEVDRLKARLAIRGFLQKFGIDYLA
TYSPVVRIESVRLVMLMAMLLGLECKHVDFVTAFLNGELVDVVIYMEQPEGYEDGTDRVCRLRKGLYGLKQASKIWNDTL
HKVLVKLGFVQCTFDAGVYWRRCQGHVMFLTVYVDDIIIAGIPNDIEEVILQLADWFKLKDLGRVRHLLGMEVNYMPGRM
VCLSQTAYIERLADKFGLQSARSVRSPQFHHEKPTKIETELTKINDPALPYKEIVGSLQYLVACTRPDLAHVVRNLGRYM
SAYSIENYRAAQRVVRYALATKNMGLVYRVNSESVVMDAFCDADHQSCPETSRSVTGYLLRLHGNTWMWKSHGQRRVTED
TCSSELVACCECTKMVVWARELVLELGFSGQELQVPIHCDNQSAIAVVACNGNTSRVRHMAKHARFINEYIQAKELDLVY
VQSAENLADIFTKALGPAEFERQRSRLNVEDVPSTWAKVAASAREHAVVKDVEMEEA
>Copia-5_ES#LTR/Copia 58-4711 via tfasty with SHACOP15_MT, 63.0% SW:1127, 1 frameshift. [Ectocarpus siliculosus]
MATGSSGEIRRGFAKFSGDPGDYVGWRTLQTSLFMEDKLHKVLLGVEKAPTDPGPSATPNQTLAYQTALEGYQDKNGQIF
TRLMLATSETGGYQSAASQTVQAYAPIGSSYNGDGRGAFLALERKYQAAGVYRTQELHEKFISLAVTADHDFDPANVIQD
MRRICTELAVYNDTVADHRKTFAFLKALPDDHYKEFKTGLLCGQAAGSVLSFEEVADRATSFHAMHIRGKVASKNASGSS
SRALNTVTHGGARSFRKGGGHHGRGRAQRGGRGRGSWNNSSNRNNGSSRGNNSNDQNHGGATSGNGAGGASSDNRPSGRP
NHSQQRRGYDRDGLCSYCHNSTEHTWTNCPLRASNATRFSNREQQQPQQQQQVNTIAEATTQAWLTHAREVDLTLESFEI
AIGDPEQVPFAPAASTPEEASDVNVGQVLAAPATASLPLLERAVPLQVPIAPATAEETEEPAASYEQEMDPPAAIQHEEL
VAYTNVFRAVDKTAPAEHTRVFIDTAASGHMVSGESPVSQHVVDLVDCDVRIKGSCGTSSATKKGTLKFKLKNDKGQPVP
IELEVLLVRDLGANTFSVGALDEKGVKTDLLSAPPALRSRNLSFPISTAEVPRMYVVNLILDDLNLDLPSSPLVFRADTD
AGVWHRRMGHCNARALKQLSDKEGTGIKFITNIQPGDCEVCDVSKSKKASHPPVGRARSLTRMMLMHLDLWGKHGVPSYS
GCQHIVMFTDDKSRMRWGIPLKTKDGVTDALETLIKEVADPEGICIGKIHCDGAADFKGRFLAMCRSFGIAVETSPPYVP
QGNAVAERGFGTVIGAARSLMLGAPHLPRQLWAEAVKAAIYIKNRTPTDVLDGKAPLEVWEDKPLGSLKHMHEWGSVAFK
HVEARSRNDKFSARAKKYYMVGYNTTSKTWRLWDPAEPLKITNSAEVSFREVDARDVARPMHGSDPFPEQGQIFQPGIIT
TGAETKDEEPELAETNDGPDEEPPAVRKSGRTTRPRDRLNLFTTEQVFETEYALVIGGEIGNLGQGIPGQLGYMPADPPN
YRAAVNGPDAVGWMKSMEEENRSLLDHDVYEWVDPPCDAQIIPSKYIYKWKYNEAGIAVRQKSRIVVQGFYEAETGTDNA
APVASLQAVHLIVAHAAKNGLVLRQADIRTAFLHARMEPRSKPVYVIPPEGFSCDSGRARQVWKLRAWLYGLRFSPKSWW
GTLHDFLLKIGFVESTAEPCLYILDDGDVLLLVYVDDILLTGEGENKVLSIVDQLNERFETVDLGGARFLLGMGINRDRA
AGTILLEQEAYTNAVLDKFGMADARPTTSPSEAGPVSVLEDEVLSAEDTTYFRSATGSLLYLSRCTRPDITHSVMVLTRS
MAKPGPRAMQKLKRVLRYLKGTISIGVRYGEDAGDGNVITAFVDSDFAGDLDKGYSTTGVVLYFAGGPVEWTSSKQTVVA
TSSVEAEFVALSKGCNIIKYFRHLLDTINQTQEEATVVWEDNSGALKLTRSFRITPRTKHIDVKFHHVRSLVADGVVDVK
QISTSLQKADIFTKGLNPSEFLRARGMLLGV
>Copia-5_BD#LTR/Copia 450-4006 via tfasty with OSR3, 1 frameshift. [Brachypodium distachyon]
MGENQGIDKVLEKLSQLFKAKNKDNLILMGKDSDEMLEISVEELEKLKNLRRLERDIENTRMTTVLGTACQASTSPHVSK
SEWILDSGASQHVTGTSSEFATFTPYSSTCKETIQIADGTSRPVRGVGDVQCTPSIMLSSVLYAPSFLVNLVSMSSLVDH
MDCRITVDRYNCLIEERKTRKKLGTGTRYNGLWYLDRRRTDGVICSALAVATSETEAKVILLHCRLGHMSFDTMSKVFPN
ELSKVEKNKLVCDACEYGKHTRTSYVSHGLRSTSPFVLIHSDVWTSPVVFVSGMKYFVTFIYCYSRMTWIYLMKHKSEVF
RCFQDFYAYVRNQFNTRVQFIRTNNGTEYVNKEFNDFLSTEGILHQTSCPDTSPQNGVAERKNGHLLEVARSMMYTMNVP
KFLWSEAVMTATYLINRMPSRVLGMKTPYEMIFGRNEFIVPPKVFGCTCFVRDHRPSMGKLDPRAVKCIFIGYSSGQKGY
KCWSPSERRTFVSMDVTFREFEPFYGEKTDLSSLFDFDSPSMSDASREGESEAVRTKEDEPSRVVVGSIPCPMSEERWRK
PNEEENLRVYTRRQPMDEERWRKPNEEENLRVYRRKRPTPTSDIHAQREHQAPTSVEIVDLSDGETCATPAPSDANDSTD
LPIALRKGTRVGARKPPDRYGFEHDIANYVSYTSLSPRYRAFIASLQSVVIPRDWKAAKQDPVWYEAMLEEMKALEKNKT
WDLVYLPSRKSLVTCKWVYTVKQNPEGKVERYKARLVARGYSQTYGIGYDETFAPVAKMSIVRTLISCAANFGWPLHQLD
VKNAFLHGDLQEEVYMEIPPGFSTPNTKGKVCRLKKSLYGLKQSPRAWFDRFRRAMSNVGYKQCNGDHTLFYRHSKNHIT
ILAVYVDDIIITGDDNVEITQLKKRLIKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLSETGMLGCRAASTPI
EQNHHLCAQLGDPVDKESYQRLVGRLIYLCHTRPDISYAVGVVSRYMHDPRSGHLEAAHRILRYLKGSPGKGLWFKGNGH
FDRRSTSGFCVFVGGNMVSWRSKKQSVVSRSTAEAEYRAMSTCLCEMLWLKGLLSELRLLRKGPLNLLCDNKSAINIANN
PVQHDRTKHVEIDRFFIKERLDEGTLKISHVTSREQIADCLTKGLGGKKCSLACSKMGMIDIYRPS
>Copia-4_DPu#LTR/Copia 40-4108 via tfasty with Copia-6_DPu, 64.5% SW:2530, 1 frameshift and 1 stopcodon. Copia-21_DPu over 80% similar with massive internal deletion. [Daphnia pulex] 
MNSTLREVSHIAKFNGTNFSLWKFGTWLLLEQHNLVGIVNGEELYPEDVRLFYHTHVTNRWFNSSRQIPFxEMIDDELVP
HDAERMDWIRRDILARNYLVATIESQQQRSLINCRTAYEMWTRLSAQHLRNAVENQHVLQQKFFEYQYQPEHDIMAHITE
VETMASMLSDVEAPVSEIQIMTKILCTLPPSYRSFTTAWDSVPAHEKTIALLTSRLLKEETMAKRWTRGQKDTNDAAFFA
HNFPTITPNGARGNRTDGGRGGRGNRRGYNRRRPESSRHRPYNPNYCSHCQLGPHKAIHCRGRIKEEADAKARDDAAAAS
DKKKATSPEENSDFSFLSEFTCFTARSIDDWYADSGATQHMSGQRSLFRNFVPVKPNTWFVNGIGGARLQVLGHGEIVFK
AKNDKTVIVGERIGRNLYHLAITAAKPVETAYFMTPAAPSLAVWHQRFAHVSCRKIAKMAAQQLVKGLTIPANAAIPSQP
CPGCIAGKMERSPFPTGRTRAVQIGQLIHSDVCGPMHVETPGGAKFFVMFTDDYSGFRTVYFLKFKSEVADCFKDYAEHL
HTETRQKIHTLRTDNGGEYTGHSFRAWLSEQGIRYETSAPHTPEQNGVSERANRTIVEGARSLLHAKHLPLELWGEAISC
AVYVLNRVTSKAAPNTPFQNWYGTKPDVSNLRIFGSTAYIHVPKIERRKLDSKSLRCYFVGYSDSQKAYRFWDPISRKIK
TSRDVIFDEQILYTPAPTSTQPNEDPFNHLILHPSIPEDESINHQLSAPLEVAQVEENVAAPPVDVHNGQEIPPVSVSIP
DNVPNPRPDRERISPYPLRVREPKRRWEESMQSTSYVPEPDEPKNLNYALKSPDAALWKLAADDEYNSLMDNKTWTLTTL
PPDREAIQSRWVLTVKPGVRGATPRYKARLVAKGYSQRPGIDYDETFAPVAKQTTLRTVLSFVAALNLEMCQLDIKTAFL
YGELNEEIYLEQPEGYISVESKNLVCRLHKCLYGLKQASRVWNQHFDNFLKLFGLTPSESDPCLYLRISGNEFTAVTIWV
DDGLVCSNSSDVITKIISHLKEHFEMRSSEANHFVGLSITRNREEKTLYISQPDYIKKILRRFHMDQCNPVDLPATPGVF
FTRDDKNEGSIQVPFREAVGSLLYLMLSSRPDISFSVNQVSQFCEKPQNCHWAAVKKILAYLKRTSEHGIRFGPELTSLL
GFTDADFAGDTDTRRSTSGYVFLLNGGPIAWSSRRQKCVTLSTTEAEYVAACEAAREGVWLKRLLNELMPNWSEPIPLMC
DNMSSIDLSKNPRFHQLTKHIHVRYHFIRLAQEENEIDVRHIPSKQQLADPFTKPLANPRFTDLRNAISVVSVPIA
>Copia-3_DEu#LTR/Copia 167-4127 via tfasty with Copia-2_DPer, 85.4% SW:4377, 2 frameshifts. [Drosophila eugracilis]
MSALYQIDKLEEKNYDSWHIQMRSVLVHAELWDVASGELKLEDAGENSNWPSRDSKALAMITLSVKTSQLSYIKTCTTSF
EAWTKLREVHQPSGPVRKVSLYKTLLSLKMEDGQNVSSHLNAFSEVLDQLSSVGIEISEELRAIILLSSLPKEYENFVVA
IETRDTLPEFEVLRIKIKEEGERRSQSDASDMHAQAFVANTTKPVTKKSWKNVICYNCGKRGHVKAECRSDGSEKKKQAP
TVQKQCSLLGALDADSFGRTKWCLDSGATSHMCCNESLFTTLEKHTETIGLAGDGFLKAEGKGVVKIKTDRYTLVLNDVL
FVPTMKGNFMSVSQTVSKGNLVHFNERHAKIIQNGECIFQIKKTGNLYTFEGKSNQCYAAASADGNLWHMRYGHINYRSL
ADIVKKGMVRGMEGCSLPQNTSCKTCMLSKIHVQPFPRKTESRASEILELIHADVCGPFSTRSLGGNRYFLTFIDDKSRR
IFVYFLKGKDEVFSKFVEFKELVERQTGKLLKCIRSDNGKEFVNATFDKFLKANGIRRQLTIPYSPQQNGVAERANRTLV
EMARCLLTQSCLAESLWGEAIYTAVYLRNRAPTNALRDMTPMEAWNGKKPSISHFKVFGSFAVALDKGHNRSKFQKKGKE
YRMVGYSRTAKGYRLYDPSTGQVIEKRDVLFDERADNLAKDAGFVSFDLPQASVSSDGQLEDERDNCSNDVSSDGKVNPS
LQEYASSDDESSYEKDEVGIKNGRSSDEFISAEEVDSAEDEDTGGDEHNAQDGKRVGPGRPKLIRTGKPGRPRKQYNVLG
AAIGSNVFVPVSYEEAIRCPDSELWLEAMNREYEALMNNQTWQIVDLPKTERAIGCKWIFTVKRDAIGQVQRYKARLVAK
GCSQQYGINYAETFSPVCRMESIRFILALAAQLKLYLHQMDVCTAYLNSDLTDTVYMKQPSGFLAKDHADGVLLLKKAIY
GLKQSGREWNCKLDGVLRSIGFSPCTNEPCLYMNTSGQHLSLILVYVDDLIIACQDKNDLIGIKSKIAQSFECVDHGQLH
MFLGLEVHREDELGEIRLSQSLYIENLLQRHGIKECRAAATPLDAGFQITCEKEGCETVNEQGYKAVIGELMWLALSSRP
DILHSVSKLAQRNKDPHSEHWTGVKHVLRYLASTKDLKLHYKNCNEALTGYVDADWGGDKTDRKSYTGYLFYLAGGPISW
KSEKQRSVALSSTEAEYMALSSACKEAISLRRLILEIGCGEPGTSTIMNTDNLSAQQLAKNPVHHSRSKHIDIRYHFVRD
VVKEGQIVLKYLSTKEMIADILTKNLQKQKHCELTKKLSLY
>Copia-3_AA#LTR/Copia 129-4059 via tfasty with Copia-19_CQ, 81.8% SW:4095, 1 frameshift and 1 stopcodon. [Aedes aegypti]
MEGNRFSLQKLGNSNYPTWRFKVELLLVREELxRYVDPGVKPDEEADATWNAGDAKARATIGLLIEDNQHGLIRAARTAK
DTWTALQNHHQKTSLTSKVSLLKQICDKRFADGDDMAEHLFEMEELFSRLANAGQELGENLTVAMILRSLFDTLTTALKS
RSDDDLTLELVKRKLLDEAAKRQGAGSSSALRVGHGSMKKKNPIKCHYCGNPGHKQKECRKFARDSEKQPKQQEKGTSKK
EKVSFALAAGGTTDTEAIKLWVVDSGATWHTVADRKFFRELRESEVKFVTLADGKQAEVHGEGCCVVECVDEHGNRREMD
ISFALYAPTLSMNLLSVPALVQKQATVVFDSAGCRILRGEATVGVARLKQGIYQIKQPENVVMVAGSHHNKDCQHVWHRH
RDPKAIDHLLKAQLVDGITLRRCSIDEKCECCLQGKTPRTPFPSESQSKSNAPMDLVHTDVCGPVEVPSVSGYRYFMTVI
DDHSRFCVLYLLKEKSEVATKIEEYVAYVKTLFGRKPKAIRSDQGGEYSGKRLRAFYKREGISAQYTAGYRPQQNGIAER
KNRSLVEMVRCMLFDAHLEQRYWAEALTTAVHLQNVLPKKPLDVTPYELWTGVKPKVDHFKIFGCSAWIHIPKVKRKKLD
ATARKLTFVGYSSEHKAYRFLDKATRKVYVSRDAKCIEEDVKIDPTDAATEGKNVDEVFFDTGRLQNHPVVPVAQPEVEP
EANTGAQHQIEIEARPEADEAEGYDTAIEDTTQTDTDFEGFSDTESPHFGEPRRSARPTQRFRDVTGVTKHVSDEPQSYS
DAVEGPEASVWQAAMQEEIEAFQETGTWELVPLRPGRKPVGCKWTYKKKEDESGQVVWCKARLVAQGFSQKFGQDYDEVF
APVVRQTTLRTILVLASQEHKLVKHLDIKSAYLHADLEEEVYMKQPPGFDQKDGMVCRLKRCIYGLKQSARAWNRKIDGV
LKAMGFKPADSDMCLYIRNRNGKLSYILMYVDDLLVVCNSEAEFDEIRRLLQDKFKLSCLGELKQFLGIRVEKAGDHYTL
DQASYIDKLIRRFEHDEAKPSKVPIDPAYLKQKEETELPTNASYRSLVGSLLYVAVNTRPDICVAVSLLGRKVTNPTNRD
WTEAKRVLRYHKATKNHRLHLGSGSGETECFVDADWAGDEGDRKSHSGFLLKFGGGLVDWGTRKQSCVALSSTEAEFVAL
ADGCQQLMWYRKLLNDLKQSSPKPIIIWEDNQSCIKIVESERLERRSKHIDTKYAYTKDLQQQRVIELGYMPTERMEADL
MTKPLERIKLERHRNAIGVKEPSEMSICQR
>Copia-3_MLP#LTR/Copia 226-4972 via tfasty with Copia-75_MLP, 60.5% SW:1804, 1 frameshift and 1 stopcodon. [Melampsora larici-populina]
MNPPDATDVKPKSQSSKSLPSNFKNTIPFPTKTIPTMTSDLKEFSTSSYSSVVKLSTGTFNDWKLKLTTLLSGQRLSKYI
LKNIPVPTDETELEDHETNSARALAAIHATIDSENFQVIRTCTNPKDAFDKLCEYHDDAGGLSTAHLFSDLMALRMQSDE
DLNEHVNKFRKIYNDLLSNLASIPDFKISEPFITIILIKSLPSEFTPLVQSLLSNFKELTLARLFSLLKIEATRSASANK
SDSALAARRNNESKPRSYRRKDLSNQPSNGLRCSLGHAGHTDQNCRTRRFRAFLEHEKKVAASASPSGNSSNVSQVSQHQ
TEPVEDVSYWDSAFSASTSFSTPIICDTGATSHMFSDISLISDLRPCRPVRISVASKDGVIWARSKGNVRFGSLTLRNVL
YSPKLTGNLVSVGSLCDNGYRASFDKSIGTIVDSHGNEILQMRRNPSTNRLWTPIIPNDSISALFSYTDPEKLAMTWHRR
LGHLHPDGVIHFLRRQKLLPISKNNFVSCDACSMGKLTQSPATSPFHRSPKRLNLVHSDLLGPITPVSKSGFKYVLSFID
DHSRYASVYLLKSKDQTFSAFKQYKALMEKKCGKILKLKSDRGGEYTSNEFISFLKEEGIEEEKGPAHRPMANSVSERYF
RTLIGKTRAQLLESGLPLSLWGELVKYCCIQINCSPSAALQNQSPIEVLESLLPGHVHPFDVDRLKPFGCLCFAVDRHRK
SKVAPVGKRFIFVGLEDGARAARLWDKEAGRIFITGDVLYREDVFPALHPTFSPDVAKELIIPSLTDQLVRTKGQDSTVV
PDETMTEVIESTGSGPAKDLGWRSPIVIEEESDRSVSPPQFCPKVLIPLSESIHAPRVESNQPRVSTSPNPSPKSLSPIR
SLPNQSEVQRLPSELGLQQYRSFSPPSSHSSATPIESPVSSAKSPEMHRSNSSSDLSSISNDVIEVVQSSPRGAESVRSS
PKAGPSTLPKSPISSPSPDRCIVPSVSQPPAVSSPPKTPPVQTTPSAISPPVEKQTEQIVQRPATPPAPRRSLRTQKEPE
RYGFTKKTAKVARVIPNSFGLSATTGSDPDSPTFKQAMSGPDRNAWRQAMQQEFDSLTQHGVGKLVDRPPEANVLGGMWV
FNRKRDEHNRVVKYKARWVVLGNHQIKGLDYNDTYASVGKLDSLRILLALSVKRRWRKRQFDVVTAFLNGNMKDLVFACQ
VRGFEHPTQPNRVWQLIKSLYGTKQAARRWQQHFGATTSEFHLNPTDSDTAVYVLKCALGILILHLHVDDSMVFYDNDEL
FFKFQAFIDSKYKLKWTEKPTLYLGIKLEIADDQSSIKISQSHYIESVLERFSMVNCNSAKTPLPQRTTLLPGTNDEIEE
AKDIPYQEMVGCLQWISAVTRPDISYAVSQLSKFNSAWTVSHWTAAKHLLRYLKGTQTLGITYSGGISEPLAYSDSDFSQ
CPTTRKSVTGYIVTVAGGAVSWKSQRQSIVALSTSEAEYVAATECSKHMAWVRAFYFDIIQQLEHPTIFHIDNTSAIFTA
SGEGLKSRSKHIDRRHHYIRQMIQSNELQVKYIPSDQMLADFLTKPLGPSAITHALKLNNLY
>Copia-4_Ano#LTR/Copia 349-3919 via tfasty with Copia-1_Ano, 62.6% SW:1719, 2 frameshifts and 3 stopcodons. [Anolis carolinensis]
MAASNSLTMIEKLNDHNYKEWSVYMKHFLVREGLQKTILGTEADREKNERGLANLILSIMPDQLVHVQNLQTAEEVWQAL
RSVHQRESTLGKMIWTKRLYRAKLSEGGDVRQHVKKMKELFLECQARGVQINKEHQAYIMMSSLTSDWDHLLYSLQAVPS
QDLSLDLVCARVLEKQDWRFFEKESAGGCKSEGDLSQMELKEKEPVFADVCVSAARKCFICNKPGHLARDCQSKSQQARG
RGHRSRGFNRSRGASNNFSGPTVMMAANEDIDNISNGVDEENDMNCTECMNKDLNVPLHNSCAHFFHRVMGHVSFCSLDK
LASVYPDLKMLKCSTFLDCAVCKQAKIKAYPVAKKSKMKASRPFEVVHTDLAGPFPESEGKARYFFVIVDRFTRYGFVYN
LKNKSDAFPIFKQWVLMIERTFPYKVASLVTDRGGEFCGSDFQSWLAESGITHKTTNPYTPAENGLAERCIGVINNMKEC
MLKDAEAPFGLWRKAIHTANYVLNRVWCSAIGQTPYLLKHLRIFGQFAFVLVPAQQRRKGQAKCQKLRFTGYEGNKYRFY
AGNGKIVLSRSANFETHSGWERIHCNKEVFVQFGQKDDEVTGTNENVEEEYSLSESDEVPNVPSPRSRLRDRKKKERPKS
SDEENSSAENIILRRSKRVRKPPDRYGKPVLYQATGNLQLDDEPGSYQQAMESVNAEEWKIAMDNEYNSMVQQxVFDIVD
RPKDQKFIDCRWVYKKKMLPDGSQKYKARLVAKGFTQVKFENYDKTFALTARPESLRLMLTLAAKRQLDIRHFEFETAYL
NADLEEIIYMEQAPGFGSGYKNEVCLLRKAVYGLRQSAHCWNHCVHEELCCLGFKRSVADACVYTRGVGEDWIGLLIYVD
DVCVVTKGLDRVVKVQKxLERKFKVKDLGNLKNYVGLEVNRSDNCKIMLSQKAKIEQLIEKCGLTDAKTVSTPMVVDYAN
QECQKLFERPDLFHSVIGSLLYISNHSRPDISYAVGYLSRRVAKPRDIDWIALKRVVRYLKGTIGYCLVFGNNEEDIDCY
ADSSFATEQECKSVSGVIVKFAGNMLVWxSRKQNNVARSTTESEYAALCEVINEIQWLQQLMSDVGEQCKTPIVIKEDSQ
ACIALTETENLKNRTKYVGVRYHIVKQMIDDNMVKLQYCPSESNVEDILTKPLPIRKHVELRKQLNVMNVQ
>Copia-3_Pru#LTR/Copia 163-4617 via tfasty with Copia-74_GM, 75.9% SW:3652, 2 stopcodons. [Prunus persica]
MGDITDSSNSRPLVSLPANSNHHHDLMNVQLLPTKLDGTNYLAWSHFVRLYITGKGRIGYLTGEKKQPDNTDPKFITWVE
EDAMLRSWLLQAMTPDISLGYMRLDSAHAIWDAVSQTYSEGGCDAQIYKLKHRIQATTQQGKTLETYFNSLQALWQELDY
YQPCDMKCSNDTAALKKRIEKERTFEFLAGLNPDLDQVRTQVLGKDPFPSLREAYAYVRAQALRRSAMVMPPSLEGSALT
STANHSAWAPPVHQSSSSAAVSSSNVAKSSKSDDKDALKCDYCHQTKHVREQCFKLNGYLPWWPGKKGEKAEGSKGGGGK
GGRSSSRAYHTSSSDxNDQPTSQLSSAQMEQIVQECARLLSDKGSKGASGPLATSSGNFGCCLSASGKSFSDSWIIDTGA
TDHMTSKLDFFSRYSSPSKTCVTTADGSPTPVVGEGSVFLSNSLSLSNVLHVPGLSNHLLSISQLTKSLNCFVTFYDTHC
VIQDQRTGATIGRGSEKEGLYLLDDPAGYTSSPTVHALQSATDSSRDIWLWHKRLGHPSFIYLQKLFPSLLSSVDLSQFK
CEICELAKHHRVSYPLSINKSSAPFALVHSDVWGPSRVSNLSNSKWFVTFIDDYSRLTWVYLMTDKSEVFSIFQSFHQMI
HTQYNSKIKVFRSDNGGEYINSGLKSYFSNHGIIHQRSCSYTPQQNGVAERKNRHLLEVARSLLLSMSVPKSYWGEAVLT
AAYLINRMPLQVLKFQTPIQVFIAACSPSTVNHLPPRVFGCISFVHLHHSGKLDPHSLKCIFLGYSATQKGYKCYHPPSK
KFFVTRDVTFHEDHAYFSLLSSETSLQGENISSEDKSYGVPMFELEKIEKNESEKNDNGREDNSLTLPPVGHRMSPYDLV
YTKRDKVPFPRNDQSAALVIGNSEVEFVEPSCSLLENNPINSVPSVDNELPIALRRPLRSCPSKYKYPISNFMSSHRLSP
YFKSFAYxLSSVSIPQKLQDALENPRWKEAMDEELRALRKNSTWELVELPRGKKVVGCKWVFTIKHKADGSVDRYKARLV
AKGYTQTYGIDYQDTFAPVAKMNTIRVLLSLAANLGWTLQQFDVKNAFLHGDLEEEVYMDMPPGIDETSQGKVCRLRKSL
YGLKQSPRAWFGRFSQAMQKYGYRPSQADHTLFLRHSRDGRITIVIVYVDDIIMTGDDIKEISKLKIHLAKEFDIKDLGT
LRYFLGIEVAHSKEGIFVSQRKYVLDLLTETGMLACKPADTPIEQNHRLGKQTDDTAVDRGRYQRLVGKLIYLAHTRPDI
AYAVSVVSQFMHEPREVHMQAVERILRYLKSSPGKGLLFSKHNNFAIEAYTDADWAGSISDRRSTTGYCTFVGGNLVTWR
SKKQTVVARSSAEAEFRAMAYGVCELLWLKILFRDLRITIQGPMRLFCDNKAAISIAHNPVQHDRTKHIEIDRHFIKEKL
SQGLICTPYVKTNDQLADILTKGVSSKVFESSLAKLGIQDIYSLA
>Copia-11_Mad#LTR/Copia 230-4769 via tfasty with Copia-3_Mad, 1 frameshift and 8 stopcodons. [Malus x domestica]
MVTVSxLQILQSPITSFISSVSTSVTMKLDDTNYLTxHFxMQLLLEGYGIMGFVDGSTPCPLRFSNVIYGDSEVVFGCST
AQVEYDAYKIWKMHDRALMQLISATLSAPAISCAIGSSSSLDLWTRLKEQFSTVSRTSIFQMKSELQTIKKGNDSITLYL
QMIKEARDYLSAAGVYFEDDDIVILTLTGLPSEFNTIRSVIRGQDTVISLKDLRSQLLAKEAMLENMNAAPMLTALVAQQ
SGFPSKNSGGFSSQHPNSNYQYNGSRVFNNKNKGRDWFNSNNRFGTNKQFFSNYGPGILGNSPQxLGSSPLMTCQIYGKH
NHLADTCRFRNTPASPSCQIRGKHNHFADTCRFRNTRVNSGYQICGNSNHSADFCFQKNSNVSMTAMYAHTNSGPQFISS
QTSVPSQQVWLTDSGATNHMTTELQNLSLATHYPSNETIxAANGEGLAISHIGSTTLQTPLHSLKLNSVLYVSKLTQNLL
SVHRICLDNNCWLIFDALCFWIQDKTTGRILYKGLCSNGVYPIISPTSSASSKLAYAAAYLGQQINSRLWHNRLGHPSNP
IVSQILRKSRLSCNPDSLPMLCSTCLEGKFTKLPFPVSQFKSVKPFEIVHSDMWGPAPCLSIEGFKYYVTFIDECTHYTW
IFPISNKSDVYPTFVSFYQYFTNQFAVSVKTLQTDGGWEYIGKSFQAFLLNKGILHHMSCPHTPEQNGLAERKHRHIIET
SITLLQTASLPPLFWSYAVQTSVYLINRMPSSTLDNKSPFELLFHDIPEIQHLRVFGCSCYPLLRPYNSTKLQPRTTKCV
FLGYASKFKGYICFEVAKRRVYISRHVIFDEFEFPYSNLVSFDKPVLSSVLTSHGSHPVLVPNNDNVMVVPSASSSSLMQ
SSSSQSAPNNSLDTRSHPITTNSLSNGSSLSMPSATSSHHTLTGALNEAAPITSTADQSLSSSVLVVPEFQLDQLQVVIY
VSSFNLHPMQTRSKSGISKKVAFMSVIHEHGGADLTKIEPATYKSSLTSSVWCEAMKEELSALHNQGTWSLVPLPPHKNL
VGCKWVFKIKKNADGSIGRYKAKLVDKGFNQEEGIDYGETFSPVVKPTTVRVVIALATHYGWCLRQLDVKNAFLHGILQE
EVYMSQPPGFHDSKHEDYVCKLHKSLYGLKQAPRAWNDRFTKFLPSLGFQSTYSDSSLFVKHASDYIVILLLYVDDIIIT
GSASQCVTDVIHALAHEFDIKDLGPLHYFLGIQIVQQPKGIFLSQYKYVTDLLTKSDMLSSKPCATPCLPYNRLLKDDGK
PYNNPALYRSLVGALQYLTFTRPDIAFTVHQVSQFMRAPMESHFLAVRRVLRYLRATQGCGLRYVHGGLDLTAFSDPDWA
GDPNDRQSTTGLVVFLGSNPISxSSKKQQTVSRSSTEAEYRAxGLSSTTAEIDWIKQLLAFLxVSVSYTPTLYCDNLSVL
ALTLNHVQHQRTKHIEVVIHFMRERVAKQLMQVHFVSSGEQFADIFTNGFFAPLFQRHCNNLQLSFSAPELEG
>Copia-29_PIT#LTR/Copia 61-4404 via tfasty with Copia-136_AA, 61.9% SW:1535, 1 stopcodon. [Phytophthora infestans]
MVKWNSEKNFDGTNYTAWKTRVRAVMxVNDLWDIAALRERPPRSVSCHDEDRFWHRERRAKAFLLETLSDDLVVSVGAKR
YTYQVLEYLEQTYEAKNWGNLVAMRENFISLKYEDGQEMTTHLNNLKTLADKLARIGKPVDDQERVCQLLTSLPESWSHF
KSVYFTQDRPLPWATMEGNVMAEFSRRQAQTAPVVVQETAVPAVLKNEVYMMAEALLAARQSHLNSRRTQSHRSTPYPPR
SSNGQTCFYCGKGGHQKQVCRLRLRHLQERGVPEEQQGSTGHAAVTVAPASPAANAAERTEQLSPALEGEVWGLAAVAGY
AAKTSADSVFIPWVIDSGCTQHMTSDRSLFEKFEAASGRNVRVATATMTPVEGVGTVLLTVQMNDGHNERVRLHKVLYVP
ALEMNLLSVYQAAQGGAKFDFHTRPGSVTMSLDHRQVTCRATNKLYVLHSARPAAAALAVRPELTLDLLHQRFGHTSKQI
LRKMASSKLASGMEFKPEQDNSPCDACELGTKRRATFKIKPRVDLDGCNNVVHSDIAGPVELPSIKLERYVLLFVDGYSR
YCTVRLLRKRSEMFQCFLEYKAAVETKHNRSLRRFVSDNGGEYLDGAFVKYCRDHGIQRETTIAYTPEQNGMAEVRFRIL
FNKVRTILISSGSPKQLWGEAVLAMVYTYNRTLASGIGVTPYERWHGHPPDVSNLRTLGSLAYVYVASKTNAQGRAGAKR
QKLDAKAVRGVFVGYAANQKGWKILDCNQGAIISSVHVTFDESCSAAARDLKRQEFRKLASHHSMDFEYYSRTATSEVDL
LFYSQRPTEEKPSANDIVLLEDFVAGFDMDSVNTSTTWPQLRAYASSSASWLQTLVGPQALTSESVHPIIRAVRKQKQAE
LLVALENLKYKESLCAAVAHGMGLDPATYREAMARPDAARWREATDAEIASLLRNKTWTLVKLPAGKRALACKWVFKRKF
NSDGTLERYKARLVVIGCQQIKFIDFDDVFAPVVRLESLRVLLAIVCIEDLECDQMDIETAFLNGVLEEEVYMQLPQGLK
VAGQEGLVCRLLKTLYGLKQAPRAWHKALVQYLTTAGFEALQCEACIFARSIGIKTQIVAIYVDDLVLIAKTRGEVAEMK
AGIQKAFRAKDMGPVSYIVGIKVVRDRRQRKLWINQQLSADSIVNRFNMQHAFATKVPSIPGKKLRKLNGADATGDVMSE
MATKPFRQAVGSLMYLMIGSRPELAFSIQDVSRFLNAYAKPHWEAVKQIIKYVKGTTAHGLEFSGSDVRLSAYSDSDYAA
DEDERKSVSGYVTFIGNCAVTWSSRKQRIVAQSTAEAEYIALAHCTREVLFIRQLLSELGYKQEETSIFEDNQACIAIAE
NPTQHSRTKHIDVRYHFIREHVRAKHIALKYVMSKENVADTFTKGLGKDHFGLLRGKLGVIEVNADAGERAVDEDREGKA
TSRGKNNK
>Copia-28_MLP#LTR/Copia 52-4995 via tfasty with Copia-22_MLP, 63.3% SW:2076, 1 stopcodon. [Melampsora larici-populina]
MKTRSRNYATNPRSPPKRRKRISKKKTKTEPNLDFPLLQDLPPLPPSPLFTPLADLPPLPPSPPYTSDLHPSTPQKRIED
VVLTTTSKPVSHFPDLSTLPPLPNSPISPLSLELNTLYDTNLPELSLTSAHPIEHTSLPIESLSPTSIGTISDLASGFAL
LNFDSIANDSHVTRTVASYPTPLPETPFYCSNTIFEPDPVRPVKPSDMSTPMTPDQFALDEINQSIKNVGNNINFPHLEK
NGSNFVDWKKDTVRAMKAMIxINNYWDTPQPLITFIDTSRDKLANLVISNTIHHDLKNVTDPSNNAHEAMQALQRHFSRG
GRTNQFALFSRLIHHQLDLNETDIITHMSNIDAIISELESTGFTWTSDSIKGLLYQLRMPAEMTKEINKDLDNRYDDKKP
NFKLDDVKNAIQIHLAREKTASETISINSLSSSIEAFSFKTPQRMQSQNRQNTPNRFTTPLNNNHRSTQFQYAYRNTPMN
ADLKARWRRGPETITHKNDARLASEDKPLSIPSSAHPNIKAGIIQCFFCGQWGHTYRDNNFKACKTFTSGGDRTGAAYND
WRKVENGLYYSIDVLYPRTYKTPSVNINSIVPDQSPSSHLVHASAMSFNSEGIILPDNESDVPTEYLTEYLCDGGATDAV
SNNRSLLTNYQPLSTPIPVHTAADDSNAVIVGKGRLPIVTEDGSTAMIDDVYYCPKATTTIISPGALIEKGAKMSLDEKN
NYKIKLKSRKVIYAVHKNRRWFINSRRRSNATGNTTSPSFGMRNTSNRSFITIMGTIVLVTYQMRRIKRLFKHSASYGLP
PLRPCHEVACEDCLKCKSTRNRVLGSTNREPKLLDVIVTDVAGPFTPCMTGEKLMVTFRDVATGYSEIEIIKQKSEVPQK
LMNIIKKWERQTGIKVKTVRSDRGGEYIGGTLEKWLKDEGINHEFSNPYEPEQNGNAERLNRTLGDMARTLLSYSRLPNH
FWNYAYLTSAYLYNRLPNTLTDDKTPYELSHGKKPNLDIIRTFGSIAYVHINTNQRAPGKLEDRGRRCTMIGYAEGGKGW
LFYDPASKTIIVSAVAKFPYEEIIKTSNEIPKKTAVTTSKSLNKIMNEDLPDKGQLKHILNALKLGDFTNELLIDKQDVA
AKHALDGNDYLKLLKPPTSYAEAMRSKEADRWKEACDAEMAMMDKMGVWKVVDKPSDLVPIALKWVFAYKKVDDEGNPTK
FKSRLVAKGYNQREGIDYTETFAPTATFAGLRIMLTIAAHQNWPVHSFDITSAYLHSAIDSPIYFSLPTGYMCEARKKNK
ILEAIKALYGTKQGARCGWKHFDSILRELGFTSSQYDQSLYFYRRKDETVIIWLHSDDGGVTGTSEKLLLEIAEKLKERL
LIKWETTLDQIVGVNVKREEDGSFTLSQPGLTKKIIKSFLPDERTAKTPMNVQKIPCSPNEEEERVDTERYLSAIGSLNY
LSVATRPDLTYTVNYLARFSSDPRRQHWQAIEHVMRYLNTTGVKSLKIKPIKTKVETPIHTYVDANWGGEGARSSHGFIT
YFLNCPIAWTSKRQTCVASSTCHAEYMALGTACRDAIWLRNLIEDLTGQGNVVNMHCDNTSAIHVSKDNSSNKRTRHTDR
EFYYINEQIYKGRIFLHWIDTKSQRADILTKPLGPTLHDQGLKHLRLK
>Copia-29_SB#LTR/Copia 74-4297  [Sorghum bicolor]
MKVQAVSLRQPPVIAMGDNQNSGGVKESSLMWPMLTCDNYSEWAMLMQCNFEALEIWGVIDPGTNPKRSQDRQAMSSLLR
SVPKEMWQSLGRHKTVKEAWEAVKVMRIGADRVKEVNAQRLLREFENIAFKEGESIEEFAMRMNNLVGNLKTLGETVEDV
RVVKKFLRVVPARFTQMVVSIEMFCNLKEMTVDELVGRLRAAEDRLEDKVDQIVDKAGRLMLAEEDWLEKHKHRFQSGSK
PGGNSGGGGTGSSKGKMAARSDGGASGSVKLTSEGTPRRKGRCRNCGIYGHWAEDCKRPKKERKKDAAPAEANVAIGGGD
QVGALMLATCDVVRDPAQCVHLTEKVIPVHVPDDVWVLDAGASNHMTGTRSMLTQLDESVRGTVRFGDGSRVEICGMGSV
VMEDRQHGHKVLTDVYYIPKLKSNIVSLGQLEEKNFWVVLGDGRLRVFDQDRTLLISAPRTGNRLYLAKFGLVSPVCLLA
QSENASWLWHARYGHLNFRALNDLGTKQMVEGLPVVTRVEKVCDGCTLGKQHRKPFPQVSSFRAEKGLELVHADLCGHIT
PKTVGGASYFLLVVHDCSRYMWVEMLKTKDQALECFKKIKLRAELECGNKLKSLRTDRGGEFVSNLFSIFCSQEGIKHYT
TTPYTPQQNRVVERRNQTVVEMARCLLKTMLVPSELWGEAVCTAVYILNRSPTKSLSKKTPFEAWHGKKPKVSHLRTFGG
VAHVKVVGPGLKKLSDRSKKMVFICYESGTKGYRFFDPAAKRLVVSRDVIFDEQQPWDWTNAGTSADQLSDGFIVHYEQS
DRNPTIGDNVDGPATEEVGGGSAVEGGVVGHDEATPSPQGNLGAPAGHNFATPPSQHSEETFGGPLRFRTLNDLFDSTEE
VQDFEYSGVCMLAADEPLGVDEALEEECWVEAMKSELLSIQNNNTWHYATLPKGHRAIGLKWVYKVKRDPEGNILKHNAR
LVAKGYVQRHGVDYEEVFAPVARLETVRVILALAAHGNWEVHHMDVKSAFLNGDLQEEVYVQQPPGFLNPNQTGKVLKLE
KALYGLKQAPRAWNSKLDQELVKLGFCRSEEEHAVYKRGSSDSLLLLGVYVDDLIICGPDKRRIAEFKDQMSKTFSMSDL
GLLSYYLGMEVNQQPGKITVCQRAYAAKIVEQCGMKGCNPLDIPMEQNNKLLPGKPDMTRDVTKFRSIVGSLRYLVNTRP
DIAFGVGMVSRFIESPTDEHWAAVKKIVRYIAGTTDYGCTYRSYATSELKLLGFSDSDHAGDLEKRRSTLGVVFFLNGNV
ITWCSQKQRVVSLSSCEAEYIAAASAACQGVWLSRLIADLTGRSVERFRLLIDNKVAIELSKNPVFHDRSKHIDTRYHYI
RECVANGIAEVEHIGTDKQLADILTKPLGRVKFIEMRQKLGVGEICHD
>Copia-31_PIT#LTR/Copia 460-4632 62.8% sim to Copia4_AG, SW:1281, [Phytophthora infestans]
MQQRMAAPMAEQFVPPPNFGLKVPKPRDLDWPGFAKFAGKEVYPGLGADFKTWGLRFLQRLAAAQQMSGGDWSEEFRILA
LNGKMDGSALVYFERMLPLWTAESPTLEHVMNRMLVPYMTTITASKGLQLMTAEKLRERTWAEHFQYLTYVAERSGCSDL
HVIQCLCKSAPGYLQSAMLTRLNSQRMDHLQQATELVAFAIEYEASMGKYERSRSQGGRGNREHGRFHGSNRGVHGERGQ
ETVSRVDDTDTRRCYNCNEIGHIARNCPAKKNNGAKEIKVSLAVGTGTNTDTHAWILDSGSSVHLVKTVELLKNAVDCDD
QYRAANGENIRVIKKGSVELKTIVDGREVVVDISDVHYAENLADNIMSYGRLEEKGVYLERHDGKSYMVQQKSGVRVFEV
HRRHNVLMIDTTGNTSKQARISAVVSQLKEANNSLNEAVTETTLLELHKRLGHISYDTVERMADAAGSGIRLTSRVRMNC
LTCAQGKQSKNNQSLKDTGASAPIDKIGGVIGSDIKGPMTPKDRRGNRYLINFVDYSTNYVRVFLAKNKVEATKKFEHFL
VYFEKRFNCRIHVLRTDGGKEYTNVDPFCKATGVRRQISERENQASNGKAERMHRTVLNMARCMLFASGLSLYFWGDAVE
YAAYVLNRSSCRANAKRISPLEMLTGSVPNLSDIVTFGSPCTAYRDAGKKAWKARAQVGMIIGKNDETKGYKVYLPKDRI
VITTQHIKNVETLDAKQNAQLQEQLEIEDPELKKAVKEREKATKRKETAVEETRNSEKTAEEENKSLDRAKKTKKKKKQA
KKNNKRRSTDAAEKEGADEGHVPTEERETTRMHTRNMGAKHVPVNRVNVVKREDPKNYKQAMKDPRADKWRQAIKEELDA
LEQNGTWTVAKKPPGTKCLRTKWVFKLKTHADGTIERYKARLVARGDQQEYGVDYTFTFSAVLELVSGRVILVVSRIWKV
PARHGDVPSAYVKAKKEAELIIILLIPQGMEFTKEQLEALGVTSKDELVLILEKGLYGLKQSGRLWNHLLHSILVSLGFQ
QCYTDSCLYIKTETDGMTLVGIYVDDILVTATSEDRVDKFFAEMQIVELKDLGVVSKFLGIAFQYDDEKGWALDQEQVIQ
DLLVKFELDNAAAVRTPIDGGYDGEETSVILPSKGAGSPRRPTVQTFQSLVGSLLWLSRCTRPDISFAVHCVTRNAHAPT
EADWRLAKRIAKYLKGTKKLKFLMNTNKNTMNNAGVLVEAFSDADYASNKKDRKSVTGGVLMVAGVIVAWLCKKQACVAL
STMESEFVAASQTTAEMLGIMECLKEVGLKLMEPSVLHVDNQAAIAQLEGEDSSGRAKHIDTRHKFVKDFVQKNVLRVQY
CESVKMRADILTKVLPAPRLKELRELVMLSG
>Copia-30_SB#LTR/Copia 42-4423 via tfasty with SC-4, 1 frameshift. [Sorghum bicolor]
MSSPPPKSTKEKGDGSSGKSPTRSRSPRRRSPRRRSRRGDHSRSVTRDARRPREIVVERIVREGGSVGNWPQLTRTNYHE
WSLRMKLKLQARHLWDAIEFDDVEFDDDRSALDAICSAVPGDMVPALATKETAKEAWETIRTLRIGDERVRTATAQSLRA
EYENIALREGEAIEDFSLRLTGIVQRLATLGDPEPEAKVVAKYLRVARARYKQLVISIETLLDISQLSIEEVTGRLKAAD
DVEPTPAHTAGGKLLLTEEQWIERYKKKDQESSRGGSTSGGRGKQRGRGRGRGSGGSSRGPPPDEPCPRCGKKGHWARDC
RSKKKEEPAQQAHVAQEEEATLMLAIGAAQEESLVSTPPPSPRSTEPPPPQSVALPELHVVEKKVHAELSDEADRDPSRW
ILDTGASNHMSGSRAAFADIDTGVTGSVRFGDGSVARIEGIGTVLFQCKNGEHRALANVYFLPRLTANIISVGQLDEGGY
QVLVEHGVMRVRDEDRRLLAKIPRSPGRLYTLDVTIARPVCLAARTDDDAWRWHARFGHIHFAALRKMGREELVRGLPVI
DQVQQVCEACLAGKQKRAPFPQKTLRRSMEPLQLLHGDICGPITPATPSGNRYFLLLVDDYSRFMWISLLPTKDAAANAI
KNIQAAAERKSGKKVVTLRTDRGGEFAAADFVDYCAQLGVHRQLTAPYTPQQNGIVERRNQTVVGTARSMMKAKALPGVF
WGEAVTTAVYLLNRSSSKAIGGKTPYQLWNGSTPSVQHLRTFGCIAHVKVNTPHLKKLEDRSRRMVFVGYEPGSKAYRAY
DPSTRRVHISRDVVFDEAAQWAWSATDHNEPGDFNIEESTPQELPVITTTRTTTAYAPASSSASPTPSSVHASPVGPDPA
SPSSLATQPQVQFASPPVSGADEHLDADHDDDAPLRFRRLDNVLGQADTPGLAHRELEERLLLASDAEPASFEEAMRHEC
WRLAMLDEMTSIEASGTWNLVELPARAKPIGLKWVYKVKKDASGIVTKHKARLVAKGYVQRQGIDYDEVFAPVARLESVR
LLLAHAACQGWAVHHMDVKSAFLNGVLQEEVYVAQPPGFVLRGQENKVLRLIKALYGLRQAPRAWYAKLDKSLIGLGFRR
SPSEHAVYLRGAGARRLVVGVYVDDLIIAGGNQVDIDTFKGQMKATFKMSDLGLLHYYLGLEVSQTEAGITICQSSYAAK
ILETAGLTGCNPSATPMEPRLKLSKVSSAPAIDSSMYRSVVGSLRYLVNSRPDLTYSVGYISRFMENPTTEHLAAMKRVL
RYVAGTLHFGCCYKRKKNPQLVGYSDSDMAGDIDTRKSTSGILFFLGDNTITWQSQKQKIVALSSCEAEYIAATTAACQG
VWLARLLAELKSEQADAVTLRIDNESAIALSKNPVFHDRSKHIDVRYHYIRECVEEDRVKLQSIGTEEQLADILTKALGR
ERFCELRSRIGVVCVQGLHKD
>Copia-28_BD#LTR/Copia 174-4176 via tfasty with SC-8, 4 frameshifts. [Brachypodium distachyon]
MIAEEEDEISEVDEMNALAALIKAVPLEMKGIIASKETAREGWEAIKLMRLGVERVREAAAERLRTQWERFAFNPGESLD
SFGMRVNNHINHMVTLGDSVAPVTVVKKFLACVPEKYMQIAMSIETLLDLKQVSLEELIGRLRAAESRYALSSGSSSAAG
GQLLLTEEEWEMRRSQRQTGQGSGGQGQNMGGTSHAQNTNGNGRGKAPKQQGVGHARNANGNIDMSKVKCFNCNKMGHFS
KHCREPRKERKGRANLAQADDEEPALLMARTCALTVVTDDAEERVMLNEERSKARAAPGDRRCDMSWFLDSGASNHMSGR
RELFSELHAGVSGRVKLGDGSLFNIEGRGKIVFSCRNGEHQVLMDVYFTPRLESNIISLGQMDENGCETNIHRGVLQLWD
PQQKLLARVRRNQGRLYVLHLEVAQPICLSVRGNDDAWRWHARYGHLHFDALRKLAKDGMVRGMPTIDRVDQLCDSCLVG
KQRRVAFPRQAKYRSDAQLDLVHGDLCGPVTPTTPGGKRYFLLLVDDHSRYMWLTLLSSKDEAAGAIKRFKALAENESQR
SLRALHTDRGGEFTSKEFAAYCEELGVTRHLTTPYSPQQNGIVERRNQTVIGMARCLLKAKGVPAEFWGEAVTTAVYLLN
RAPTVSVVGKNPFEAWFGWQPDVHYLRTFGCIGHVKTVSLHLKKLDDRSRRMVMFGYEPGSKAYRMYDPVARRIHVTRDV
VFDEEAAWNWGETSNDDNTGMTDSFTVEYVVHTAAPTPHGALTPAPSGEEGDPMPAPSTPVTPTAPQQVQVEFATPPMIE
PELFDNDDNVNVPHRYRTVTNVLDAGAAPRLNLLLDEEPVNHRDAAQYEWWQRAMSEEMQSIEANDTWRLVSLPEGQRAI
GLKWVYKVKKDSRGKVTKHKARLVAKGYVQRHGVDYDEVFAPVARLDSVRLLLALVAHAGWTVHHMDVKSAFLNGELEET
VFVAQPPGFEVEGQEHKVYQLRKALYGLKQAPRAWNAKLDSCLQSLGFVRSELEHAVYAWGDGEARVLVGVCVDDLIITG
ADEHQLGNFKEEMKQLFAMSDLGSLSFYLGIDMKQHSTGITICQSAYAAKILERSGMAGCNSCQTATPTDASEYRSIVGC
LRYLVHTRPDITFALGYVSRFMESPTVEHFAAVKHILRYIAGTLNFGCKYERGANGNASITGYSDSDLAGDVDDGKSTSG
VFFFLGSSPISWQSTKQKVVALSSCEAEYIAATTSICQGVWLARLLGELKMEEAARVKLFVDNKSAISLSRNPVFHDRSK
HIDTRYHFIRWCIEDRQAEVEFIWTEVQLSDILTKSLGKIRFLELRSKIGMIEIK
>Copia-24_BD#LTR/Copia 25-4371 via tfasty with Copia-21_BD, 78.6% SW:3934, 4 stopcodons. [Brachypodium distachyon]
MTSVLQIAGTACALVSNPSATLAAPAALSSIPVRLDHTNFMLWRTLMLPNLSGANLYGYLDGSVPAPPKEITQGESKEAK
TVANPAYHAWWVQDQRTLAMLLANMGEDVAATMTGRTTSAQVWSAVHDMFSAQNRASVRHVRLQLQTLKKRDMTAAEYFR
KMKALADMMAAIGNPLSDDEVIDYILAGLGPQFESLAASLTVITTPVTLAQFYSFLLRCEAMQEHQAQSGEWSIRQCCCS
WxSPSPTIQRWPLLPLRQRGGGGQQGGNGQHGQNGGRNNNRRDGGNRDGGNRNGCGGGGQYRPRCQICRNWGHDALACRN
RFNQGYQADDxCTGYQGNSASTSHGYHDNHRYMDTGATDHLTSDLERLLVQERYSVKDQVQVANGAGLSISHIGHSHLAG
SSLKLNNILHVPKISKHLLSIYKLVTDNNIFIEFHPKFFFVKDMVTRKIILQGRSCGGLYPIPFARALPASRHASSSIKV
TSQQWHHRLGHPTNNVVQFLARHKHFSFSPSESNISICDACQHGKSHELPYHASTRVSTMPLELIHTDVWGPALPSSGDY
KYYVSFVDDYSHFCWIYLLKYKLDVKHVFYSFQNHVERLLNAKIKSMQSDWGGEYHRLHKYFQRVGISHRVSCPHTSQQN
GIAERKHRHLVETGLTILAQSSLPLRFWDEAFLTAxYLINCMPTPVLHQDTPIHRLLGVTPNYEFLRTFGCACWPSRRKC
TAHKLEFRSKMCTFLGYSTLHKGYKCLDRSNGRIYISRDVVFDENIFPSATPGVSVDVSQLRDLVTFPVSEPAMINDVRK
YDLTYLVPNPAVPAEVPLVQVTGDGDVHVAPKLPGSVQVDQEAGASSPTPGPASPAHSVSVDPAQDELGLSPNAGREEFP
VPASAATAPPPAAAAPPPPPADGHSMITRSRNNIHKPRELKDGTVRYDPRRRAFLAAPTSHRDALGELAWRAAMEDEFDA
LCKNSTWTLVPPPPGTNIVSYRWIFKTKHRPDGSIDKHKARLVARGFTQQHGIDYGDTFSPVVKPATMRLVLSLAISRNW
ILRQVDVSNAFLHGFLAEDVYMHQPPGFEDPTRPSFVCKLQRALYGLKQSPWAWYARLSDRLQQLGFVPSKADTSMFIFS
RDGVQLYMLVYVDDIIIAGSTPHAVDHLVQSLSEIFPIKDLGKLEYFLGLEVSYNYGGISLTQCKYAFDLLHRANMENCK
PTSTPLCVPNKLAKDSVTPLSGDDAFRYRSMVGGLQYLALTRPDIVFAVNKVCQYLAQPTDEHWEAVKRILRYVKGTMNT
GLSITKSPSTSISIFTDADWAGCVDDRRSMGGFAVFLGSNLISWSSKKQPTVSRLSTEEEYKALANGTAEAIWMQSVLQE
LGVKQxKPPILWCDNLAATYLTANPVFHARTKHIEIDFHFVRERVSSGTLDVRFISSGDQLANVFTKPATRQMLDRFKHN
LNLVHNGSD
>Copia-23_MLP#LTR/Copia 690-5500 via tfasty with Copia-75_MLP, 61.0% SW:1893, 1 frameshift and 1 stopcodon. [Melampsora larici-populina]
MNPNSSTNVNPESKPSKSSRSKPPTETTQPSLSQSKNSIPFPLIENKPSMTDQKEFSLSSYSNIVKLTSYTFNDWKLKLI
TVLGGQRLSKFLLKDLPEPTDPTELEDFETNSSRALAAIHATIDGENFQVIRTCTSPRQAFKALCEHHDDAGGLSTAHLF
SDLVSIKLHPDEDLSEHIAKFRKIHNDILSNLASTPDFKISEPFIAIILIKSLPSDYTPLVQSLLTNFETLTLTRLYSLL
KIEATRNASSANTDTALSANRPRNNYKSKANRKNNRSGNHTPSTSNLRCSLGHSGHTDENCRTRKYKAFLEFEKQQNSKS
SNHATTSVSAQLSQSIPDADEDVSYWESAFSATTSSKDPIICDTGATSHMFSDSSLITDLQSIKPTRIGVASQDGAIWAK
HKGIVRFESLILRDVLYSPELTGNLISIGRLCDDGFNASFAKTIGTITDSTGKTVLRMRRNTSTNRLWTPIFDKPVPRAF
FSYTDAEKFATLWHRRLGHLHPDAVILFLKRHKMLPLSRKNFLPCDSCAMGKLTQAPATHSFHRSPGVLNLVHSDLIGPI
SPSSKTGFKYVVTFIDDHTRYSTVYLLKSKNQTFDAFKQYKSLMEKKCGSKIMKLKSDRGGEYSSAQFIKFLKDEGIEEE
KGPAHRPTADSVAERYNRTLLSKVRSQLIHSGLPLSLWGELVKYTCLQINCSPSAALQNLSPMEVFEANLPGHVHPFDTD
RLKPFGSLCFAVDRNQKSKVGPIAKRFIFLGLEDGARAARLWDKQTGCVLVTGDVVYWEDIFPAQHPSLSPKVQDELILP
EYTTKRVSSTPESEPSLSPKPPKIASPNCFEVLQDTTESNEDESDGDKPPPSWPYQPKETIPLSGSIHAPKDIEPITDAD
TVNHPQPLLVKDNAIRDHTSISSKSSPSVRSAPSPHSSASSISDLIDQNPEDTPDVISPVSIHSSPLSSIKSLPGRESID
HTPPRVITPSPKTPPQVTVSPKPPTPPSVVSPKSPISVPDVTPTPQASSSTKPPPAPPPRIKAAKQSAPVAVRKSSRVSK
PPERYGFLTESGVSKSSSSPMLITNSWTVIPNHYGFSATTGSDPDSPTFSQAMTGPDRQAWINAMQHEFDSLTEHGVGKL
VDPPPDANILGGMWIFNKKRDEHNHVVCFKARWVVLGNHQIKGLDYDDTYASVGKIDSLRILLALSTIKPKAKGKRRMKV
RQFDVVTAFLNGDMKDRVYAKQVTGFENPTLRHRVWLLIKSLYGTKQAARRWQQHFGATAAGFELFPIDSDTAVYVLRTS
LGLLILHLHVDDSLIFCDDDDLFDKFKLFIDSKYKLKWNDKPTLYLGIKLEISDDNSEIKISQSHYLDAVLERFAMLNCK
PAKSPLPQKLILTPGTEEEVEEAKNIPYQELVGCLQWISTCTRPDISYAVSQLSKFNSSWTITHWTAAKHLLRYLRGTQD
LAITYSGGIAEPQAYSDSDFSQCSLTRKSVTGFVVTVANGAVSWKSQHQPVVALSTSEAEYIAATECSKHMAWVxSFYFD
IMHQLESPTPFYIDNTSAIFTATSDGIKARSKHIDRRHHYIRDLIQSNSIIIYHIPSEEMLADHLTKPLGPVALNHALKI
NNMI
>Copia-24_ST#LTR/Copia 175-4865 via tfasty with Copia-74_ST, 79.0% SW:4748, 3 frameshifts and 4 stopcodons. [Solanum tuberosum]
MVELTNEGSSAGINTGSSTGIDTNSHLYIHPSDSPGVVLVLVPFDGTGFHSWRRSVLRSLSVKNKLIFINGECKRPPKTD
PTYRQWVRCDDMVTSWIPNSLGREVADSVEYVGDALELWTELEDRYDQTNGAQLYQTQKEINDLSQGILDITTYYTRIKK
LWEELNSLCVTSQCNCVCICGAKTNLQKAEQDRRLIQFLMGLNEVYTIIRGSILMMNPLPSMAQAFALLVQEEKQREFKP
NNQLFVEGSSLLAGSSSSSNSSGGRNFTTNYSSSNITSNAPRDRPYCDYCRRPGHTRVKCYKLHGYPPGLTTNNPRPTNH
DPQHQNQRYNNQNSSHRNNKGKGIVANFVSLSCDIPGNQDESSESHFNDQGNNNINLTREQYEQVAHLLQQFKEFSPMED
QNAMHMTGGAVKFAAGTLTCSTSIDFDKLSCECFKTRTDLWILDLGASHHMTFDRNLLVNLITLPYPLLVRLPNGYRVKI
TEIGSVCLTSKITLYKVLYAPSFKFNLISINTLADSLKCTVSFSNTSCLLQAPSLKRPLEIGKFAHDGLYFLCSDCLQQN
NSSNPKQQHVSCISFPSSKIQYKCISSSCPSYSAVMNSMSINNKDNVVDKTSSSFPVNNTDLLWHYRLGHVPFVKMKGIS
SIPVKFSPKQPFFCPICHMARQSKLPFLTRSHNSTSIFELVHVDLWGPYHTATHDNFKYFITMVDDFSKSTWTHLLSCKS
NALHVIKAFVIMVENQFSTSVKVIRSDNGLEFTNNESIMFFQTKGILHQKYCPYTPQQNGVVERKHKYILETAKALLFQS
KLPMKYWGECILTATHLINRLPSTSLINKCPYEVLHQHKPVYSNLRSFGCLCYPTIPKAHRTKFDPKAVPHIFIGYPSCT
KGYKVLNLTTKKIHISRDVIFHETIFSFAMTNDPTHFRASPFHSVGLSDYSYYHHPSTPVESDPGPVNNTNQPLSPTLST
PTTSPIGPSNPTMSFTLPHTSIPICHPTRPALRRSHRIHRVPPYLSDYVHRTPPVISSQPPTSLNAHFSFNHHISHCALN
PESQSLVMNVSHDCEPSSYAEAATNPAWQTTMTEEFNALHDNNTWTLTTLPIDKKAIGCKWVxKFKHKADGSVERYKARL
VVKGYTQHHGIDYTETFSSVVKMTTVRTLIATAAKKQWNIYQLDVNNAFLHGDLHEEVYMDIPPGLSIPTTGMVCKLNKS
LYGLKQASRQWYEKLTEALNTRGYTHSLHDYSLFYRKRGTSTVFLGVYVDDILLTGTDIDEITELKKFLHHQFKIKDLGR
LHYFLGLEILYKDDGILISQRKFVxDLLKEFSCDHSTPLSSPLDPNVKLxAYEGKALDDPTQYRKLVGKLNFLTNTRLDL
AYGVQFLSQYMQDPREPHLRAAFHMLHYLKKDPTLGVFMSSSADFTVSAYCNFDxAACLDSRKSVTGYIVLLGDSPISWK
SKKQETISLSSAEAEYRSLRKVVGELVWSKRLFEELTLPSLGPFHVHCDSQAAIHIAKNPVFHERTKHIEVDCHFVRTKL
QEGLITLHHIGTATQLADILTKALTGIKHCTLLDKLAMSIPPPT
>Copia-27_GM#LTR/Copia 56-3937  [Glycine max]
MEGETSYTAGSPPIFDGEEYELWAARMTAHLEALDLWEAVEENYDVPELPLDPTVAQMKNHRERKTKKAKAKNCLFSAVS
KIIFTRIMNFKSAKQIWDYLRSEYQGCERTKGMQVLNLGREFEMQSMKETETIKGYADRLLGIANRVRLLGKDFPDERIV
QKILVTIPEKYESKISALEESKDLSTITLGELINALQAQEQRRMMRQEEVVQGAFHTKAQNSRGGKDKKNNKWRNKKPEG
SNKQQGETFPPCPHCKKTNHPERKCWWRPDVKCRKCGNMGHVERICKSKSEEAKVVAEEREDEQLFVATCFATSNSSSDS
WLIDSGCTNHMTNDLNLFKKLDKTIVSKVKIGNGDFISVKGKGTVAIESLTGLKYISDVLYVPDIDQNLLSVAQLVEKGF
KVIFEENWCLIKDAKGKDVFRVKMRAKSYALNLMEEKQIAFSSMTTNVELWHKRLGHFHLAGLLYMQKHALVKGVSMLED
KLADCVACQYGKLVRKPFPQSTWRATQKLQLVHTDVGGPQRVSSLNGNKYYITFIDDHTRFCWIYFFKSKTEVANIFWKF
KALVENQSDCRLQTIRSDNGKEYRNDVFDKFCEEAGIEHQLTVPYTPQQNGVSERKNRSIMEMTRCMLHEKELPKELWAE
AANTAVFLLNRLPTRVLHKKTPFEGWFGYKPDLQNLKIFGCVCFSYVPQVKRDKLDKKAEPGVFIGYSNTSKAYRIFQPQ
NGKILVSRDVKFMEDQQWSWDEPIRKQLPEIPQFLDDDVDDIPVRGTRSLSEIYQKSNVAVLEPAEFEEAEKDDKWINAM
KEELKMIEKNDTWELVDRPQHKQPIGVKWVYRTKLNPDGSVNKYKARLVVKGYAQVFGVDFSETFAPVARLDTIRMLLAL
TAHKRWKVYHLDVKSAFLNGYLQEEIYVEQPEGFQIKGEEQKVYKLKKALYGLKQAPRAWYSRIDDHLQDLGFVKSPSEA
ALYVKLVDANLIIIAVYVDDLLVTGSDEKLIKEFKAEMFKAFEMTDLGLMSFFLGMEVKQDHGGILIHQKKYAREILKKF
HMEDCKSTTSPMNQKEKFSKDDGADKVDEMHYRSLIGCLIYLTATRPDILFAVSILSRFMHCASEVHLQAAKRVIRYVKG
TLDYGIMYSHSHNFKLHGYSDSDWAGCIDDMRSTSGYCFSFGSGVFSWCSKKQEVVAQSTAEAEYVAVVAAVNQALWIRK
IMTDLHMKQEESTQIFVDNQAAISIANDPVFHGKTKHFKIKLFLLREVQREGEVKLLYCKTENQSADILTKALPKAKFEY
LRQKLGVCSSKVKE
>Copia-25_PIT#LTR/Copia 344-5914 via tfasty with Copia-11_SB, 60.2% SW:1211, 2 frameshifts and 1 stopcodon. [Phytophthora infestans]
MDNTFPGGRYDDKELAEYAKALRNSPDILLPKLVIKADYKAWRSKVPLHFEPRTLGAITYGGERFDAALGYQRPKYNEWY
CARKNKAFSALALSLSVDLRSKFKIDEMRDNVEAASILWTYITKHFEAGDGINPDYLMRDLMTRMLQTNESVTVYVDDIE
RKVTMLRQAKGEFEEWQHASLLLSNVVLVFRDLAREHANWINSNDRKSLKLTEALQRLRSAEHLRNQLELQSRPATDVAR
PMQVAHVAGGQGASRGNGNNRKRGKLQRKQMKAVVDKKQRTQCASCSGDGHWYAECTDQTGKPLKAELARKLAEKKQSRK
PPASLVGSVRRVQVVQGESDAQGLTTGVSLCAGSDTETVDLTGNASPDAEASPVYSPTSPASPNDDDQAGLNLPNSTMAT
SQQLELEEKPPAVPALADVAVQQAVQTLVTDAVQRQWEGVQSQGSVPTWQKILLHISQELKGVSNVEPLPEPKHNKGGSQ
GGPLVRGDGIQGIHLDILRSQGHDESYGNQMQLSPYQQGRQYGREARGRSPLRDEPMYFNRGRSRSPPGMQGWRGRSPPR
GRTDALPWGPPRRSSSPPPRWGGRLSSPPREPPSHYGPQPRQQWRNDPPSRYGPQLPQQQQWRDGPPRERGPSPPRGGGR
SYDEHGYRDGNRRRDMSPRRSPRRFAGPPCDGSTRSWQVNAVAHNQGMQCDAVEWILDSGSQANVCGDLALFTTIREDSA
SRLAFANGTTEHASVCGSVLLRVMKQATGMMEDRLLDDVVYTPNAKVNIISLGYLQMTGKYKLTCSHDQRTAWMSKPGTI
LKFAMHENIYRLRTERVPGVMVMAALKQNFDSKKSMELLHQRFGHASMDTVRVLLNKLDVGVKMNANGLSSYECVACAAS
KSRRMTHSRILVRKPKPLEKLMMDICTVNEPTIGGAIMFLLIIDESTRYKWAYLLEKKSEATWHIKVLLTQLKTKLPKLA
VQRLRSDQGGELASTELANYCAENGIEQQFTNAYSPQENGIVERANGIVMPRVRAMLSATSLSNTLWGEALLHIVATLSK
LPTKSLGLVTPIHKLFRSAPDVDELRIWECIAHVRVPPESRQKKEKLQPRAKLSLLLGYSDTTVGYKFLDLETAQVVTAR
GGNVRFHEEFTANGTYVKQLLENAFHDGDHQLPETVPVTRIKTSMVTYLPGKEDVCTAQQLEVLPIADATAENVQSSSGR
TSTADSPTTSDNAITNSAELQPGVAAPAAVQEPAEETEVATKAKKKRKRRARKKPASTEEEVTGFEKQQPPVEPCLKRPR
RTQKQSVRLRDYVVGHVLATGMDMKIPTTYKQARRSKHWLRWKEAMLAELQSLKSHKTWKLVPRAVAKGVKVITCRWVFA
VKRDERGRIKRFKARLVIHGFKQRLGVDYCETYAPVIRFETIRTAIYYAVQRGWEVLQYDVKTAFLYGDLEELIFMEQPP
GFQVDGPGFICKLLKSLYGLKQAPNIWNKTLHTKLMTMGFERMDSDYGLYALKENGEVKLLLTVYVDDLLLMGPREVCLE
VAASLRETFELTTMGAVKYLLGVEILINRPRRQIIYSQRQYVLEILKRFHMSDCNGCATPESATLRLMAVPTSKEYLPYR
ELVGALQYLVSASRPDIAHATRHLGKFLANYNHSHFAQAKRVLRYLKATNNYGLVMDVQLGTSVRICCYSDADYANDPAD
RRSISGYVSMLDGNVISYASRKQEINALSTCEAEYVAMSEATKDLLWxAGLCNELAWKHPTPLLLGDNEGAISLSTKPGK
HSKSKHIDNKYHMVRRSVELEKLTTQHVGTKDMVDDTMTKALAVVKFAHFRKAMKVLPIVMKDAKNDEDGKDSEDGTATT
REASASTTAAMTTVRHH
>Copia-31_Pru#LTR/Copia 108-4663 via tfasty with Copia-62_Mad, 79.5% SW:4433, 1 frameshift and 4 stopcodons. [Prunus persica]
MGDMQDLFNEDGQSNEVPQITSGGSGQPMSIVNVHHDSSAAPTIVKLNGTNYSVWSQLLELHVAGKRKYGYLTGASAAPA
LADSNYNKWYAENAIVKGWLIQSMEPDIMQIFLPYKTAKDVWENVKKTYYDGQDQSQIYELTCRAFKAxQSGRQLVTYYA
ELQSIWHEIDYxRPNKFTNSSDILLRQQEIEIDRVYVFLAGLDDVFDRVRSDILRMDPFSNLERAFSCVRREDQRRSTMM
VPPTPVNTGVAMVARNSRPASSYKPVDSTINGPTRHSMPASSYKPVGSTANGPTGSTRPNGPQRVKPQNGERCTHCNSTN
HFVTDCFKLHGYPEWWDEVKERNKAKVAAERYAQGKVALCIGSPDPSVPQASHMPSVSSSIVPPGFVALPTGDSGTSSNT
SDSAFAAATGLGIGSGWIIDSGASNHMTFDSTNLKTRTTPSLTSMANANDQSYPVIGAGTVDLSPNLTLEHVLLVPSLSQ
NLLSVGQVTEQLNCFVLIHPLFCLLQDIRTQEIIGRGTKRGGLYYVDDVCTGKALIAHDSAADKKIQIWLWHWRLGHASF
GYLKHLFPALFLDFDISSLQCETCILAKSHRVSYPISFNKNDKPFALIHSDVWGPSPVSTISGIRWFVTFVDNYTRMTWI
YFMKNKSEVFGLFKQFYQMVQTQFSKKIQFLQSDNGGEYVSHDFVSFFQDNGLLHETTCPYTPQQNGVAERKNHHILETA
MSILIEAHMPKMFWSDAILYAVYLLNRMPSSVHGYKTPLDVLTSTHPLPSVLTLHPRSFGCIAYVHILKHLRSKLDPCAL
KCVFVGFSPYSKGYRCYHPPTKRTYVTMDITFSDLSMYFSHESNPPLQGENENIEEQNWNWTIMLPDIIIEREEVICNEK
ENAVTSVEDLASHVANPTLFPATPHIPHNCSPSSTPTVLVQIPEASNNPEVSTxPNLINTDNLITNDIDSVAETRYQLPP
RRNRGIPPDRFSPENLKKSNYPIANYVSTHRLSEACAVFANHMTTEFIPSKVQDALAAPQWKKAMDEEMLALKKNQTWDL
VSLPQGKRPVGCRWIFTIKHKVDGTIDRYKARLVAKGYTQTYGVDYxETFAPVAKINTVRVLISLAANLDWPLQQFDVKN
AFLHGELKEEVYMSLPPGFDLSENPNLVCKLRKSLYGLKQSPRAWFGKFSYAMKKYGYRQSNADHTLFLKRRKGKITVLI
IYVDDMIITGDDTEEIDKLKHYLSTEFEMKDLGGLKYFLGIEVARSQHGIFLSQRKYVLDLLNETGMLGCKPADTPIVQN
HNLEILPDQVPTNKDRYQRLVGRLIYLSHTKPDIAYAVSVVSQFIHSPSEVHMEAVMRILQYLKSAPGKGLMFSKHGNWE
IEGFTDADWAGNRTDRRSTSGYFTFVGGNLVTWRSKKQKVCSLSSAEAKYQSMVHGVCEMLWIRKLLKELGFVAKDAMKL
YCDNQAAIDIANNPVQHDRTKHVEIDRHFINEKLESNVISVPHVKSEEQLADILTKAVSSHVFSDSLDKLGIGDIYAST
>Copia-37_ZM_env#LTR/Copia 6346-7770 [Zea mays]
MDAEDFPHVHPDYPIDXQGWTYPKRRFSMAEYCSRRTVNQYALPSDTNIQFFHTQLQFDVFWGTLVDTNFHKHQVIDWSF
LLSQSVMEGLIPKFETCGLYQFMGQRTDFNEMAVKQFLATSEIDIEEESITWMTGFKRYSASFADFAAANSLDYGTISAG
LDLYTEDNFEDFVQFYEPARLGIPRRFGETAGLRHHPAVINKIARVTILPKSGDKSKIRDKFWNIIQHIMNGEVMNIVLF
MMRQLNDLKMDKNQNLAYAPYIMALIKSKTRFEGPCEIVHTPFRPFKNEIGFLTRPLTPFPDDEEDPGYEGGAAPNVEGQ
QMPPPPPPPQPQHYWEPAPGYFDPYFHNMQQGLETHIDTRFEGLMTHVDHRLDDMQSRFDSNWDALNSEFSDFRDQIHTN
VTDPIMSRLNNMQQSFQDNMGALSSQFDNLSTNDNMHDISQRQQQLQQDFGQFSSLFDTFSTHYYNMHPPPSDQ
>Copia-37_SB#LTR/Copia 1299-5444 via tfasty with Copia-18_SB, 2 frameshifts. [Sorghum bicolor]
MTDNALAFNEPCPVEPAEPVREENETEAAFATRKRDHATVRMSYDLAKKQWDNSNKKCLTLAKATISEPIRGSLPECATI
TEYLEKVKNQFHGTTKTQASMLIRELITKKYTGGGVREHILRLNSLASKLASMKMELPEPFIIHVIFSSLPKEFEAFVVS
YNMAPEEWNLDKLIASVCVQEEERLKDSRGDSALFVRDNKKKFYNKNAKPQGKPKWDGSSSSSAQAKAPHGKAPQQPQQD
NRAQGDNKPQYTNKKKPWLDPDQCLFCENSGLMQKDCIGFLKFCNRKGEDLVTFVDESLYLSYDKSTWWIDSGATIHVAN
SLQGFHTRRTLQKGERTIKVANGVQADVEAIGDLSLALLDGFVLRLSDVLFVPSLHRNLISVSKLDDDGLACHFGDGKCK
ILFHNKCVGLVFRQDKLYLLSISENVNAISIVNETNSSSMNVNRKRKNHQHDSSKLWHCRLGHISRGRIERLVKNDILPP
LELSELDQYIDCIKGKYVKKIKKNAKRSAGTLEIIHTDICGPFPVKSVDGYDSFITFTDDYSRFGYIYPIRERSEALEKF
KIFKAEVENQHNKKIKIVRSDRGGEYYGRHTPYGQVPGPFGKFLQENGIVAQYSMLGEPQQNGVAERRNRTLMDMVRSMI
SYSTLPISLWMEALKTAIHILNRVPSKSVPKTPYELWTGKAPSLNHLRVWGCPAEAKVFNPNLGKLDPKTVSCHFIGYPE
RSKGYRFYCPDRQTKFVETRHAEFLEDVMIRGSQVAREISLEEKRVYAPTPMLQESYFTLPIVATPAVLDTVVPAPVVSS
PLPTLDENLEPVPQDPLEPPVVQQEEQQQPHIAPNNENLRRSQRTRRSAISDDYEVYETEEFHMEDDPTTYEQAMRSEYA
AKWLEAMRDEIRSMDSNKVWELMEIPKGAKKVGCKWDYKTKYDSQGNVERHKARLVAKGFTQREEIDYNETFSPVSCKDS
FRIIMALVAHFDLELHQMDVKTAFLNGDLEEDVYMAQPKGFVMEGKENMRCRLRKSIYGLKQASRQWYLKFDNTIRKFGF
KANVEDNCVYAKFKNAKFIFLVLYVDDILLASNDVSLLLETKKFLSSHFDMKDLGEASFVLGIEIHRDRNRGVLGLSQKA
YIDKILKKYGMHKCSPSPAPVVKGDRYGEHQCPKNQIELEQMSSVPYASAVGSLQYAQICTRPDIAFVTGLLGRYQKNPG
VEHWKLVKKVLRYLQGTKGFMLNYRKTDSLEIVGFSDSDYAGDERKSTSGYIFTFAGGAISWKSSKQPIVYREFVACYEA
SGQVNWLKKFLPGLRVVDSIERPLKLYCDNNPAVGYAHNNRSSGAAKHIDIRYYVVKEKVQDHIISLEHIKTDNMLADPL
TKGLPPNVFRKHVAGMGLRESL
>Copia-38_DPu#LTR/Copia 71-4630 via tfasty with Copia-25_DPu, 77.5% SW:4116, 4 frameshifts and 6 stopcodons. [Daphnia pulex]
MSLSLAHVVKFDGSNLPLWRLGLDVALEKHEVQSVTDGICACPPEVNLFTLKVSSWTQSLLTKSFIFLARSILFQTHSxx
APExKERTNxTLSVLLQMRQVIEPVPPAEGGQIPLNPVAQTLGPIMNAEAIKEWKVKDCTARRILLATIELKLQNTLVGC
KTAFQIWTRLNSQHNKCAANNKYAVQRNFLNYDYQKGMFSVTMITIMSKQFYRLDILNPCHDAMSHISAIETIAEQLRNM
GEPQTRLQICTKIIYTLPEHLRGFISVWESLSEEEQTIPLLTAKILNEESKNAMFKNQDLDLGYNATSNRGRRGGQGNGR
GGFSGGDRSYDGPPAAKKPRYNGSLCEYCQPRGFIATHPFAECRKHAHAVKRESANAAVSRTAKPDSVNAPIQPIIDFGL
PAFPLTASAYLDQSVFYADSGATAHCTNMKHLLRNIVTVPKGSWIIQGLRGAQAEVEAYGDIIFEATVNGQKRVGIFKRV
LYAPDTGINLISIGQVTALGTNVNFSGENCEFVKKNEVEATGLRIGNTLYQLNIKAIIESPKKEHAFLGKQSAASLMTWH
LRLSHVNCRTIQRMEETNAVEGMKITSRKLPAICEGCIYGKMCRRSFQCSTEPKTWEVGELIVSYIGGPMQEKSLSGALY
YVAMKDKASGYRHAFFIKEKSEVVGKFKIYIPSFQNETGKIIKCIRTDNGTEYRGQNWIWVDELGIKRQYTIAYTPQQNG
VSERDNRTIVEAARSALYGRKHPVTSHVLLRLWAEAINYAVYTLNRTLSRTRNVTAIERYSGTKPNVSHMRQFGISCFVH
VADKKRQKLDPKAEKGMFLGYDMTSTGFRVLILSTFVISDEVKFEEDEEEGLINPEPSTLSSLPDFPFATQSTFTPDGDL
GDRPIAESPLPITNPPAVEPQVTEQPIPPSLGEHSVDPLPTTELQTKARAQREINGVDIHTLNQHDLKNNTQPDNDDLDN
IATPIERRYPLRNRKAKIIQSMTSMDFGEQSSEPGSFREAMESREAFLWQPSIQEEYDSHIRNGTWQLVPLPPGRTSIGT
RWVFTVKPGYLETPKRYKSRFVAKGYSQVKGIDFNEYALYAPVVGYTSLRIILSLCAIFDLEMAQLDIKTAFLNGLVEEE
IYIDQPEGFITPESEHLVGRLVKCIYGLKQAPHVWNEKFNDFLILFGFTRSKHDPCVxFRRRETEILIMAIWVDNGLICS
NNKTAIAEIISFLATHFEMRSLPTDRFVGLELTRNRKEKKLxVNQQAFIEKVIFRFNMSQCNLKLTPADPNVRLSKEMEP
KTKSQKQEAKRLPYQQAVGCLNYLAQTTRPDIGFAVNQLSRYSNLFGEEHWKAAKHVIAYLKGTVSYGLCYGGDGANVSP
SLVGYSDSDYAGDLDNFRSTTGYILFFNLGPVFWRSRLQPSTAGSTMQAEYQALSDFAKETVFVRWLLQELNFFGQQPAM
LFCDNTAAINLANNPSCQAKTRHINVAYHTIRDFIKDRSIDVNQVSSKENLADTLTKSLPAVAFEKIRALIGVQPLLLSS
>Copia-38_SB#LTR/Copia 49-4349 via tfasty with Copia-9_SB, 1 frameshift. [Sorghum bicolor]
MAEDAGRNGGGEGAERQLQPAPPQVEVRVVKEFGGSGSWPMLTRTNYGEWAMQMKWKLRARKWWRAIEEDDRTEDAQVGV
MEALMASTPAEYHEALGAKETAKQAWEMLESLRVGSDRAKRARIQQLRRELNDIKFKPGESVEEFTLRLQSLATQLATYG
KKVDDEDLVTKLLRTVPAKYSQLAMSIETMLDISTLSLEDVAGQLRVAESRITPAPEKEKPKLLLTEEEWTARMKDKRRT
GEGSTSRGGDGAKGRGKPPADKKKKKRNADPNACRRCGKVGHWARECPEKKPEKKEEAHLARDDSDDECALLMGECCALQ
EGEAGEAEAKQGTAPQAVELDESRARVLLGADGEELEQRWYLDSGASNHMTGSRAVFSELDEETTGSVKFGDGSRVAIRG
RGTVLFRCRNGEHRALTDVYWIPKTSIISLGQLDERGAEVVIKGGVLRIRDQDRRLLAKVTRSKNRLFLLDLKVEQPVCL
AAQCTEESWLWHGRLGHLNFDALSRLAAMVRGMPKIQHASELCDSCLVGKQRRLPFPKEAKYRAKEKLELVHGDLCGPIT
PATHGGRRYFLLLVDDYGRYMWLRLLTSKSEAAEAIKQLKAKVEAESGRRLRVLRTYRGGEFTAVEFATYCAEEGVERHL
TAPYSPQQNGVVERRNQSIVGMARCMLKAKGMPGAFWGEAVSTAVFILNRAPTKALSGKTPFEAWHGRKPSVAFMRTFGC
IGHVKNTKPGLTKLEDRSTKMVFLGYEEGSKAYMLYDPVTGRVTVSRDVVFDEAGKWRWEEEDLAGEEGALGIGGTFTVE
QLVITSQVHAPTGVVEEAAAPGAGEAGGEAPAAGEAEPPSPTTTGGTPPQQRTPTTAQVEYATPPPDVTEFVDAFHDGEE
VRFRRVDNVIGDAATPGLAARLLGEEEELMMLSTEEPATFAAAEREPEWRRAMLEEMRQIEANRTWELVDPPAGCRPIGL
KWVYKVKKDEHGAVVKHKARLVARGFVQREGIDFEEVFAPVARMESVRLVLAMAAAKDWAVHHLDVKSAFLNGDLTEEVF
VKQAPGFIAQGAEHKVLRLRKALYGLRQAPRAWNSKLDATMAELGFTRCATEHALYTRRRGKEELVVGVYVDDLIVTGAR
ERDISSFKTEMAAKFQMTDLGALSYYLGIEVKQGGKAVTLGQRAYARKVLERAGMENCRPAATPMEERIKLSKQSTAEKV
DATRYRSIVGGLRWLTHTRPDIAFAVGYVSRFMEDPREDHWMAVKRVLRYIQGTMDQALVFPKGGGSGGGGLELAAYSDA
DMAGDVDGRRSTSGVLILLGAAPVAWQSLKQKTVALSTCEAEYVAAATAACQLVWMRRLLGELTGIEPRPPVLKVDNQPA
IALAKNPVLHDRSKHIDVKFHFLRDCVEEKQIVIEFVETGRQLADIFTKPVGRLRFLELRSKIGMVEVKSTQQD
>Copia-38_Pru#LTR/Copia 186-4332 via tfasty with Copia-12_Mad, 72.2% SW:3630, 2 frameshifts and 1 stopcodon. [Prunus persica]
SSFLKIESLLGLLTIRLADDNFLKWSYQIESVLQGYELFGHFDGSSIPPLQFAIVDEEGETSELNTAYKEWIRTDKALLS
LLIASLSDEACLKYVIGCKTARDAWINLSDRYASVSRTRINHLKTELQTAQKGGDSIERFLLRLKHLRDQLNAAGIKISD
DDFIITALNGLPPEYDIIKTVLIARDTPLSLKDFRAQLLAAEQTAEARIVHHTALYAINSSCAQGSSVSSGQGILRTPSQ
PLPHVQSFGGQQSSFSRASGSRGFSTQTSGRGRFNGGRHVSSQFRGGSTSGFPGGSHSYRSHVVPECQICSKRGHTAANC
YYRHANANSSSSTPNVVECQICGKRGHGALDCFHRSNYSFQGQAPPSSLTAMTAQTSFSPEHVWIADSGASHHMVGNSSQ
LDHVTPCNVDENVTVGNGAGLTIQNLGTATISCAQSTSLHLPSILHVPKLKANLLSVHQLCKDNNCFITFDVSGQHVNVS
IWHQRLGHPTNTVVQRMLQDFALSVSVDSSQALCTACLHGKMHKLSFPKDHVKSNVPFQRIHSDVWGPSRQKSIDGFRYY
VSFIDECTGYLWLYPLFNKSGVFEEFLKFYALVTNQFKATIQYFQNDGGGEFISRQFSSFLDSKGIIHQVSCPYTPQQNG
LAERKNRHIIETALTLLVASALPDKFWFHSVAHTAYLINLMPSSVLRYQSPFQSLYGKAPDIKSLRIFGTAVYPYIRPYN
EHKLQPRTAQCVFMGYSPGYKGVICYNRSTSRFVVSRHVIHDESVFPFKSHSISADSVPVSCSSKPQSLPVCVSLPPCIH
ALNPSDISGSVSPQHVSSQNHSLQNVSIPSLESTENPALSSSDSVLSVINDQQLQVLLPVSPFVSSSVSPPFNTHTMQTR
SKAGILKSKQFEDYQCYYTTLPVIHDVIEPATYKVASQSVLWIQAMKDEIEALHAQGIWELVPKPVHKNIIGCRxVYRIK
KNSDGTLARYKIDWSLRQLDVKNAFLDGDLEEEVYMRQPQGFEDPKHLSYVCKLRKSLYGLKQAPRAWNAKFTGYLPAIG
FASSHSDPSLFVKHLGSDIVILLLYVDDIILTGSKVALVQEVVDELSSAFDMKDMGKLKYFLGLQISYNTAGDIFVNQAK
YAKDLLAKAGLSSCRSCPTPCKPHGQLLKTEGDALTDPTIYRSIVGALQYLTFTKPEIFYAVNTVCQFMTTPSELHFQLV
KKILRYLQGTLDHGLTFTSGAWELNAYSDADWAADISTRRSTTGFVAFLGHSPISWQSKKQNSVSRSSTEAEYRALAHTA
ADLAWIRQVLLDLKVFLPQPPTIHCDNLSALALSSNPVYHSRIKHLDIDFHFVRERVQRRDLSMQYIPTDEQVADIFTKG
LHSPLFTKHCGNLWLGNLAGFEG
>Copia-37_BG#LTR/Copia 259-5259 61.4% sim to Gypsy-26_BG, SW:2473, [Blumeria graminis]
MTARFINEDTPDVPSEDYDSYIEDQIAYFKKLDHRDEGLWEDFRAEFAKWQQEDFNKMSKYTRGILRSYLRDNGVYINRN
DAVAEGLTKLLDEREPTEWPPEELAKMITSGKFNSRRNPDLPGSYAYLRKEEERKMPWPSSKMDLQSPDEMPLPQPFLMQ
QSPNIKFPASRISGDVRNNLNPAPIIPESQQKPSYTQKINAQSGSLQGSSFNIQNLQKSYLKEDRYSGADDVLDKKLRIF
YAMCHNANVDPLDYHRAFPIMLTGEARDYFFNKVSGNRCNFSEMIQDLKSYFETEQRQERKTIEWEDTTLKDYTLRNPGM
TILQCFDLMRDQLLRDQAILRPEFQTDLMIRDKLYRACRNVPECNIALFRRCPTFQGASEEIRNALAIHTQNRTQQNFVS
KGMDIHDNCNAFYVDRKYKGKSTRNESLSKSSGKPATTKKCFVCKKAGCWSTNHSDEERKISFQRFKATPWNDSKIQQFI
NEYEGLDPDNSADYEQFIDEFELEDNKNLDLSASHMSRTYTTECFGDVDGEQLIEDLERQSITHAFCASYKVTPKTEITS
STTTIDIFLSSRYSTGVFMGIMVDTGASYRSTAGHEQFLALRSIQNIELNESRAGETKVQFGIGSTTSLGTADVTTPLGI
ITFHVVTADTPFLLSLKDMDDLRVKLDNLENVLIQGEKRIPIIRAYGHPWMLLNTTKALTYLAQGPKNNAVATCHLTEVE
LRRLHRRFGHPSVGRLHKVLQRSGNDTRFEDLERLTRYCEQCQTHGKAPGRFKFTLKDDIDFNHTLLVDVLSLHDGQVLH
IVDEATSFQGGRFLKNMSAKHAWDTLREAWIDTYLGPPAYIAHDPGTNFSAQEFRDNARMMNVEPIQKPVEAHNAIGQVE
RYHIPLKRAYRIISAEGPGLSKEMKLQMALKAINDTAGPNGLVPTVLVFGAYPRISNSDAPSASIIARATAVKKAMVEVR
KCHAARKVADALNMRNGPLTKHLHDLPLGSEVIVYGEGRGWDKTPYKLVWMDGETIQVDVNGRYVNFRSTRVKPFLRDPC
SIDDQIQPEDIVGQENNREYPPENNAPQPVFRQLRRSQRNLQPKDPGSEPKTSAFINDGIFESPYRDTIEDINLEQVEAF
LSEKENRDREFSSELREKGIITAPGKPFILSRRKEMDGLMVRGVYELVCRDDEELRDRRIFGSRMVDEVKGKETSMPYEK
SRLVIQAYNDHGKKEILTQSPTIQRVSQRIIVALAPSLSPCGISLFLRDITQAYVQSKTKLVRPIYATPPKQMRDEFRPQ
DILKILKPLYGIPESGTHWYGTYHSHHQTKLEMKNSTYDPCLLVTENQQGPFGVVGMQTDDTLVLGDEKFVKKEGLELEK
AELLAKPIEKLTHDNPLMFNGCKLVIDKNGDGLNLTQKGQGKRLRQINPNSDDFKETYLKRRARGAYIASICQPEAAFDC
SIAAQHQNPGKEDVEALNKRLEWRMKNLDRGLHYIPLDLESAKIFVFVDGSFANNHDLSSQIGYVIVLGNEALGIGKFRL
QANILHWSSTKCKRVTRAVLASELYGMVAGIDMAISISTTLNMITKQLNINQIPVVICTDSFSLYECMVKLGTTKEKRLM
IDIMAIRQSYERRELSEIRWITGDSNPADSMTKSTSNGALKNLVSTNNIDVKVQGWVQREASTRLNN
>Copia-32_Pru#LTR/Copia 120-4237  [Prunus persica]
MAGSGSSEVRTPIFSGENYEFWRIKMVTIFKSLGLWSLVEKGISVSDSKMKTKKVEASSEEEAEAEMCAVLMKDAKALGI
IQNAVSDQIFPRIANADSAKMAWTLLYSEYHGGDQVRSVKLQNLRREFEYMRMREGEQLTAYLTRLNELINQMKTFGEVL
SNERLVQKVLISLSRVYDPICLVIENTKSLETIELQEVIAILKSQEQRFDMHTVDIAEKAFGSFSIDQKGQNKNNAQSGT
AKSQKSWKPNNKPWESRQKPQQAGTGQTSNGAHSVQQDGVKPQCKVCSKFHYGECRFKGQPKCYKCERFGHLARECTTNK
SVQKANNASQVEVGGNLFYANCAISKGSANEEWYVDSGCSNHMTGNKELLIDMNTSVTGKVQMPTGELINITGMGTLVLN
TSTGTKHIREVMYLPGLKENLLSVGQMDEHGYHLVFGSNMCSIFDDSSLEKLIMKVEMKRNRCYPLTLSPTDYVALRAGV
SHSTWIWHKRMGHLHLNGLNQLKEKEMVHGLPHLEAVNGVCEGCQFGKQHREWFPKNQAWRASTPLELIHMDLCGPMQNE
SISGNKYFMLLIDDCTRMIWVYFLRYKSDALNCFRKFKSMVELQSGFKVQCVRSDKGGEFTSCEFNKLCEETGIQRQFSM
AYTPQQNGVVERKNRTVAEMAKAMLHEKDLPYYLWAEAVHTAVYILNRCPTKALKHRTPFEAYSTRKPGVAHFKVFGSVC
FVHKPAEGRQKLDAKSTKGVFVGYATCEKGYRVFDPVTRKLLLSRDVIFDEEATWNWKEVTENQMQVLNYEEQPRNPATT
PFETPVGNQTHDLMSGGRVSQGESSKQSSRVEDTQQFDHTPLKWRKLDDILAQCNLYIVEPEKFDEAVKDESWIKAMKDE
LSMIEKNATWELVDRPSSKPIIGVKWVFKTKLNLDGSVQKNKARLVAKGYSQKPGVDYNETFAPVARLDTIRTLIALAAQ
KGWQLYQLDVKSAFLNGVLEEEVYVDQPEGFVVKGSESKVYKLNKALYGLKQAPRAWYSEIDSYFAKCGFTKSQSEATLY
VKTRGEASILIVSIYVDDIVYTGNCHTMIEEFKQDMMEKYEMTDLGLLHHFLGMGVIQTPTSIFLHQRKYASTLLSRFGL
SDCKPVVIPLVPTEKLSKDDGSGSASEEQYRKIVGSLLYLTATRPDIMFAASLLARFMHCPTNKHLGTAKRVLRYVKGTL
DYGLEYVKGKGAVLIGYCDSDWSGLVDDSKSTSGYAFSFGSGVFAWASVKQHCVALSTAEAEYISASEATTQAVWLRFVL
EDFGEFQTEATPLHCDNTSAIAITKNPVFHQKTKHIDRRYHFIKDALQEGIVDLIYCPTNEQLADIFTKALAKDRFSYLR
EKLGVKSAHNLKG
>Copia-31_VV#LTR/Copia 40-3936 [Vitis vinifera]
MAEEAGKASGIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKT
TTDLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMR
MAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCW
NCGKTGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGS
ALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPR
DTIAVADASTDTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLW
GPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGI
RMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVSMEFRLPEEVWSGKEVKFSHLK
VFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQIMYKDRSTVTSDVTELDQKKSE
FVNLDELTESTVQKGGEEDKENVNSQVDLSTPIVEVRRSSRNTRPPQRYSPVLNYLLLTDGGEPECYDEALQDENSSKWE
LAMKDEMDSLLGNQTWQLTELPVGKKALHNKWVYRIKNEHDGSKRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVL
GMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEA
DHCCYFKSFDNSYIILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKV
LSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEEMDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWE
AVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATE
AGKEMIWLHGFLDELGKKQEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPADMLTK
GVTIEKLKLCAASIGLLA
>Copia-35_BG#LTR/Copia 233-5347 57.1% sim to Gypsy-26_BG, SW:1806, [Blumeria graminis]
MSAKPSSSTPLKFDSDEAITIYVQNRLDLYRAKGVRDDPLWERWVEDFEDWDVNLFSKVDSELRREFRDYLISRGIYMTP
NPKGKHIDQQLAAEVKRDDFHEWTPEEIAFYQKKNPLGVSSRCDPKDPSYREYERTIQAALDYERTRGNMRKEIKEEDKD
LSTKQEGKEPQSNSPSHGDEGNKYGRSDSDKDNRSSSNAPNQRPYPQRDNYLPWEDRPLHKSRQLESLVKMYKDEDKYKD
GTDSFDYKRKIFFNNCNNACVEKRHFKDALAIMFAGDASEKYLDLTLHIEDMSFDERCDLIKSHYETVHWINRRETIWNT
LNLIEEMRKCPDKLQAFNNLERELRRVQRGLEAHSGDAALRTRIINACSGVVDLHFVLFSPAKTAEGVCADIRARFMQLS
LSGTPTSQYTQHELNECQKSDNSYLAERQYQTARGSRRGRSGKSFHGRDRVSSRMEGSSASSSWVKRCLICKKANCWSTN
HSAEERQAAFNKVKKTYPSKDEDAVRQFIVQFEGQSTDTELYQFLTIEDLPDESEFSDEHGYDNVDQYLFEEIGGENAVA
YLQEQTTRHKFTAPRMKYAVSEQEQGIIFRVDSLNIDLDLHINVLDSEIETAEKVHLLGKVFSLQTMKDDRYDDRVFHGV
LVDTGAAGRSTAGIGQAKALQQIQKEFKVDKTRAGEVKISGIGSGVFVSIGSVTLDTPIGKVTFHILPCNTPFLLSLQDM
TRLGVTPDVLKNAMMKDQRPVAALIRKYGHLWMTLNHIQSLFIYEADQHPICYLTEQQIRTCHRRWGHPTATRMWKIFRR
AGHDVDIKIINQISKFCEDCQLNANRPLRFKFTLTNKDVPFNHTVYVDVLHLEDGPAVHLVDAGTNLGSADFLTGTEKEG
ATSICNSIDRCWNNVYIGPPENLIHDAGKNFASAEFRTTASGWKTHVVEVPIEAHHSIGKVEHAHKDLRRAYSIFKRQFT
GHNVNRHSILKMAVKALNDTAGPDGLIPTLCAFGAYPRITWDDGPAPVAKERVENMRKAMEELQKYRATQLVNKAKDMRN
GPQNHHLQDVPIGGKVRVWREATKSSRGKWTGPFELYNKEGETITVIINKEKKNFRSTSVKKWFHDDDTNNLDNSNLKQP
ATGLDSQTELEPMPPHPLRRSGREGRFAGQYPSDDHFVPCLEQHSPVYLSQDEEAIRLSLELRSKGLITTPGPPFSASNK
KEIDGLIASKVFRFMPWNKSLLGKRIYKCRIVKAIKGKETIKPFEKSRLVVQAYNDQDKSLVLTQSPTVQRASQRLIFCF
AICLILQFDQTLFLRDIQQAYTQSRTHLVRDFYCWPSPEIIKAMDLPADTIMHIIKPLYGIPEAGNHWFDTWIKYLTKEL
GLKSSCFDPCLLVTHVEPFSITGMQVDDTLFLGTKEFLELEDEKLNKAQFPAKPIERLSDTNPLQFNGLLISLCDNSLHI
QTNGQGKKIKLVNVKDPNRIDIYKRQRALGAWISSNCQPLVAFRLSRAAQHQEPGDQEIIELNNALHEQQIDPSKGLKYV
NLDLNKLKAYCWVDGSFANNKDLTSQIGFVITLGNENFGDNDFTFRGNIIHWSSTKCKRVTRAVLASELYAMTHGVDIAI
PLCMTVNQIMGQLGLPVVPLIICTDSRSLYECLVKLGTTKEKRLMIDVMAIRESYERRELAEIRWINGKDNPADSMTKEN
ATSALRTLIETNKLTVRLEGWVNRK
>Copia-37_BD#LTR/Copia 40-4340 via tfasty with Copia-3_BD, 85.1% SW:4936, 5 frameshifts and 3 stopcodons. [Brachypodium distachyon]
MSNTQRDRSASRSVTPAASRTPSRGRSRRRRRDGRVVIQQEVVREVAGNSGAITFPMLTRTNYLDWAILMRVQMQGAGLx
EAVEGETSARQERQAFAAILRSVPPVMMRVVAAKDNAHEAWESVKLMRTGVERVREAKAQKLRKEYENLAFKGGESIEDF
TLRLSALVTDLQQAGDDITEEKAVKKLLHALPPRIKPVAVAMESCLDLARMSIEELSGRLSAAEDGLDSEPEVGGKLMLT
EExRMARQGQRLGGGSSSGGGDKARGNTKPKPKGKVAGGAIDSDDKNKAAPKKGKCHNCGIYGHWAKECRKPRPPAAREA
ANLAQANQDEPALLLAVSGDNMVQLEGSGLRAPDPPVPGTALAERGEVETRSADVETERVFLNEERVVPVPCDDDRWFLD
TGVSNHMTGNRGMFVRLDETVKGTVKFGDGSLVDIHGRGSVLIECKNAEHRVLTEVYYIPRLRSNIISLGQLDEIGVKTV
IEDGMLCLYDLQRRLLARVRRMKNRLYSVTLSLAAPVCLLAKGDTAWCWHAHYGHLHFRALHDLGAKEMVRGLPVIQRME
QFCVGCSLGKQARTPFPQATAYRAEEKLELWHGDLCGPITPASAGGNKYFLLIVDDCSRYMWLEVLKSKDEAFKYFKKVK
VLAENESNLSLKAFRTDRGGEFISTEFSEFCEEKGIRRFTTAPYSPEQNGVVERRNRTVVEMARSLLKSMNVPNSFWAEA
VKTAVHILNRSPTRSLKGVTPYEAWYKRTPNVSYLRTFGCVAHVKNVVPGVKKLEDRSVPMVFIGxEEGSKAYRVYNPKT
RRVCVTRDVVFEENKCWDWKNAGMSSESMEELRVEYYIVPAAASATAARSPASTPSAASPAAAERTAASTPTAAATSAAA
GNSPPTNPAASSAAAEQNLAAPQPHPMETRAQRGIFMPNPRYTDDDYDYSGLCFLAAEEPASVESALQEKEWWNAMEEEM
DSIRSNDTWELSPLPEGHRAIGLKWVFKVKRDPAGKVVKHKARLVAKGYAQKQGVDFDEVFAPVARMETVRMMLALAAHS
GWEVHHMDVKSAFLNGDLLEEVYVHQPVGFVDEKNSNKVLKLRKALYGLRQAPRAWNAKLDQTLTKLGFERCPLEHALYR
KGDAENFLLVGVYVDDLIITGRLSEDIQLFKDQMGRMFLMSDLGLLSYYLGMEVQQKDEQITVRQSSYAQKILEMAGMEG
CNPCHTPMENRLKLSKSQAGDPVDATRYMSIIGSLRYLVNSRPDIANAVGIVSRFMEAPGSHHWAAVKQILRYVRGTSGY
GCCYKRSTMTPELVGYSDDRKSTTGVVFFLGDSVVTWASQKQKIVALSSCEAEYIAAAAAACQGVWLARLLAEMKGIDAA
KFRLLVDNKSAIVLCIDTRFHYIRQCMEEGKVEVDHVGTLDQKPDILTKSLGRVRFVEMRTLLGVVSVKDKHQD
>Copia-35_CQ#LTR/Copia 17-4022  [Culex quinquefasciatus]
MGTMKDGIPLLTGQNFENWSYRVQLHFEGAELAEVFTADVPAAAAGNQDREKFLKLDRKAKTQLVGFISEECLGIVKGKE
TTKLMWQALEGHFLKKSVASQTIIRMQLARLRMKEGTGMRSHFQCFDDLVRQLKSVGAKLEEGDLIAQLFLSLPESFDPL
VTALENLDEKDISLELCKQRLLAEEAKRINRMEESPEVTTAAFVGQKKKFSGKCRRCGKKGHMAKDCRVKLSEGQANAVV
KERPVSFMVNQGQPGRDSTKVVFYVDSGCSDHLVNNLACLKAVRKLKHPFIVDVAKDGVSLTGSYEGVLEGVTMAGVPVE
MKEVVFLPELRGNLMSVKKLSKAGVDVLFTGSRGQEKAVMKFNGAVIAVAYLRNNLYELELEVNMSRGTANLCAAELGKL
WHRRLGHASQQAMDNLVKHEMVTGINTPLGAVGFCDTCVLGKQAREPFSGRREPVTRPLERIHSDVCGPIDPPGWDGSRY
FVSFIDDYTHFAMVYTIKKKSEVFESFKEYEALVTTQLEKKICKMTVDQGREYCSNQQLDYYKRRGIQLQPTVAYSPQQN
GVSERFNRTVVEKSRTMMIDAKVPKNLWPEAVQTATYILNRSSTAAIVEKETPVERWTNIKPDLEKLRVFGCQAFAWIPN
QQRKKLDPKSRETVMIGYAPNGYRLWDQRDRKVVIARDVKFNEAHFPFAEDGDAQSAPPLMIQVQHDVPEGDQRVADFDV
PVQDAAEVEVPPIGNEADDDTDDAEFCDADGGAYPADNDAGGAGQFSSEEDNPGALPSQQRGDGFSESNTRRSDRERKFP
GKFLDFLTYGAHCAVKNSELADPPLTFDEINTRADGHLWKAAVDDELRSLDANAVWKLVKCPSGIKPLKSKWVLRVKEDE
SGNPVRYKARLVVKGFLQKAGLDYHETYAPVAKLVTIRTALAVGVQRRCYFHQMDVKTAFLHGKLQETIFMAVPDGVQAE
PGTACQLLKSLYGLKQSPRCWNERFNQVLVQLGFTRSKYDYCLYTRFNERGNDAVILVLYVDDLLIIGKRQETIQKLKMD
LAQTFEMTDCGEVKFFLGMKIDYNWQQGRMKLSQAASIDKVLKNFGMENCNPTKTPMEKGLMLERQVTEAAEEPYRELLG
SLMYMMMSTRPDICFSVGYLGRFQQQPGQQHWTALKRVVRYMKGTKQMNLEINRCEDANCLLGFADADWATDTEDRKSVS
GFLFQVYGNTVSWSSKKQTTVATSSSEAEYVALSAAASEAIWLRGLLGDLGEAITGPVTIFEDNHGCIGMAKNLESKRAK
HIDIKHHFIRDHVADGKLNIQPIGTTNQLADIFTKALDPGRFGDLRRQLGLRDREG
>Copia-14_CQ#LTR/Copia 80-4173 via tfasty with Copia-6_AG, 3 frameshifts and 3 stopcodons. [Culex quinquefasciatus]
MSTGGDGADAPGRAATKQTLSNLPPMELLMGRENWPDWKFAVQTMLEVEGLWDAVEPAAGAVVDPVMDKLAKGRIILMVH
KSNFHHLRGVQTAKEAWTKLENVFEDSGLTRRMALINKLTSTRLDNSESMQAFVSDILEAAHQLRGIGFDVTDEWVGSFL
LNGLPASYRPMIMALENCGQAITGDLIKTKLLQEVSVPSEGAAFASNKQHKKSTKSHQSNPPSSHLSTSKGPKCHIARDC
KMKEPKKDGSARCTVLSALNEEDDNWHFDSGASNHFSKSDAMLEDLQQYGGTVVAANRGAMKVVAKGRMQLTPKSCPDSP
IVVNDVQVIPELSSNLLSVNQIVKRGCTVIFNSAGVKVLNSDGDVMATGTRYRELFKLDLRSQETKSALACSSAVGLEVW
HQRLGHLNLPSVRKLASGLANGIKIVGADKEDCKVCPMGKHTRQPFNKKGSRATGMLDVVHTDICGPFEVPSMGGSKYYI
LFVDDRSRKMWVFFLKTKSEEEVLRTFKEFHRMVERQSERKLKVLRSDNGKEYVNNGMRSYLKQHGIVHQTTNPYTPEQN
GMSERGNRTIVERARCLLFGAGLEKKFWAEAVGTAVYLLNRSPTQGHESTPEEVWTSKKPDLSHLRIFGTKAMVQIPKQK
RRKLDPKSHKCIFVGYDEHVKGYRFYDPQSRKVFSSREVRFINEGVLEKQENQRQEQVVRLDIEPYVPPAASGSPNRFVE
IDDATENELENPDTDADVDNSEDEFLGFEETAGSVTDVTSVLPPQSSSNPPLSPELRRSGREHKLPGKYDDFHVSLRGLP
RPNPLQEVESTDTSDDDASEDNSSEKSDDPVPPSRDTSCVVATARSLAVDGDPLSHKDARSREDSASWKKAMFDEYEALM
ANDTWTLTELPKGRNAIKCRWVFKTKHDASGNVDRHKARLVVKGFSQRKGEDYDETYSPVVRHSSLRYLSALRQIxLVDD
RxRTTAFCRASxREIFMEQPPCFEDPTRRNLVCRLNKALYGLKQSSRVWNGKLDAALKRFGLHSSKYDPCLYNRIADGKI
LFVAIYVDDVVIVSNDEGVKNEIKAKLSSTFRMKDLGPVSSCLGIRVTRGQGCVALDQQAYIESMLTRFNMQNAKPVSTP
SNPCVKLIKEMAPKTADEAEKMKRVPYPEAVGCLMYLATCTRPDIMHAVNQLSRFNANPGPKHWEAVKHLFRYLRGTCGL
KLRYRKHGNTELVGYADASWASDLDDRKSTSGYIFMLQGGAVAWSCKRQPTVALSTCEAEYMALAATVQEASWWHGLLAQ
LGRKQPIELRCDNQSAICIAKNGGYTPRTKHIDIRHHYIRDALDKKIVQLTYVSTDEQTADGLTKSLERIKLERNRSAMG
ISGSA
>Copia-13_SI#LTR/Copia 77-3967 via tfasty with Copia1_DM, 72.6% SW:2441, 3 frameshifts and 1 stopcodon. [Solenopsis invicta]
MSVSIGTQNIEKLNDTNYESWKIQIKSVLVCNELWKYTSGSETRTPENSVTWTSKDEKALALILLSVSKNQLSHIKKVAT
SREAWEKLSSIYESRGPVRKSVLYKQLSSMKKEQGQSMIEFVNGFVDKVEQLEDAGIKLPDELVSVIMLNSLPIEYENFC
VAIESRDNIPTIDFLKTKLIEEEARRIDQDDGKNQDPENNALVANNKGSKKNVKDTHTKYTKNKFNGKCYKCNKFGHKST
ECKSKFKHNTGNNTNDAMFACARHTGIQVSTQWCLDSGATSHMCHDGRKFSELDASKKCDVYTATDDSVGSEGVGDVRMK
VKLKDSETNDIKLKDTILVPRFRSNLLSVSRMTDNGYTVMFKRNCAFVNRQDGSTALIAKRQGQLYVVDEAEQSRAQAAQ
DAGNDSPLRWHQRFGHLNLADLKKLKSKEMVIGLSMKGESEELKCEICDKCKIHQLPYKSSTKREKEVLGLVHSDICGPM
RVPSLGGAKYFVTFIDDKSRYIEVVMLKRRSDVVSAFKAYKKRAEKETGCQIKKIRTDNAKEYLSKEFNDFLEEEGIKRQ
LSVEYCPQQNGVAERANRTLVEMARCMLLQSGVPNTLWGEAINAAAYIRNRCPTKILENLTPIEAWSSEKPYVGYMRIFG
SKVVALEKKPHRDKFKPRGKEYILVGYSQESKAYRLWSPGTGTVVKRRDVRFTEDLRNKTEDTKEILETSLNPDWHKLTS
TQRTNGESNENSDNSEWEEENEEQFNTPEEEIDTPTTSRRGPGRPKLLRTGKRGRPRKLYNETKQGEEASKSTGEEDDQA
xLDAKQDEYDSLMKYNTWELVPRPKAKKVLSNRWVYKIKRKQDGSILKYKARLVVRGCEQTYGVDYEEIFAPVARYETIR
AFLAGCVQEEMHVHQMDVVTAYVQGDLADEIYMEQPGGFEDSSEEDKVCLLKRPLYGLKQAGRCWYGKLDNYLKSINMIN
SDIDPCVYVSKSRDIIIVVYVDDLLIASKSLCKLQKFKETLRSKFQMNDLGPVNDILGINVERDGPTGKMRLTQRKYIIE
TLQKFNMENCKPISTPLESSQKLTKTMDSNTGDMKHKPYRELIGSLIYLANATRPDLAFVASALSRFCTDPKEAHWKLAK
RTLRYLQCTIDYGIIYTKSSKKMVAYADSDWAGDIEDRKSCSGNVIVLANGPISWKSKKQKSVALSTMEAEYMSLSEVCK
EIVYLRRLLEHIGFKSCVTGPTEVYCDNQSAIELNKNHVFHGRSKHIDIRYHNSREMRDKGEISLSYLPTDKMLADLLTK
PLVKAKHEECVRLLGLRQ
>Copia-14_SB#LTR/Copia 34-4682 via tfasty with Copia-11_SB, 1 frameshift. [Sorghum bicolor]
MATSAERAAAAAAAAAGQRAQRLAAAEAAAAQAQQAAEAAAAAAREAATTAAALRRELWDEQPFEEEPHQDLREEPRDRR
RPLRRSPDRMRRQSRSPDQDRRRGRGGRGRSPVIQAVYKDSGGSTTWPMLSKTNYHEWASIMKLKLQARQLWDAIEYGDL
PHHEDRRTVEALIAAVPQEMQMPLSEKATAKEAWDSLATARIGGERARRTALQRLRREWELLSFRPGEQAEDFTLRLVAL
KQQLALHGDTDINEERAVEKLLRAAPAKYAQLCIAIETLLDFQDLTIEEVSGRLKTVDDLQEVPGEPLIIAGKLMLSEEQ
WHARQKEKKKGVQDSASASGKEPRRRPRGGKKQRAKNERREDDGERKANRDDICLNCKRPGHWARDCRDPPRQGGGGGRD
RGGQQQGGRGGGGGGGARGAAHVAEADSDDGALFFAHGVVQLEEKAPEVLCTKAAAFLDFAEPRARAFLGDASDEDKLDG
WYLDSGATHHMSGRREIFSELDTTVRGTVKFGDASRVEIQGVGSVVFQAKNGEHRILHGVYFIPALRNSIMSLGQLDEAG
SKVEIEHGVLRIWDQRKRLLAKVKRGSNRLYILHLDAVQPVCLAARKDDDAWRWHERLGHLHFDTIHRLGKEEMARGIPV
IEHAAQVCDTCVTTKMRRRSFPQKATYRAEQPLELVHGDLCGPITPATPGGRRYFLLMVDDATRFMFVALLATKDEAAQA
VKKIKAQAEKETGRELKVLRTDNGGEFTCSELAEYFAMEGVKRHFSAPHSPQQNGVVERRNQTVVATARALLKQRGMPAR
FWGEAVVTAVHLLNRSPTKSLQGVTPYEAWHRRAPSVAHLRVFGCVAYTRDLGQLRKLDDRGVPGIFIGYAEGAKAYRVF
DPASGRVKTSRDVIFDEGRGWNWTTPAAGSFAAASSDFDIEWPAEAEEIPASTPTSPSPPRAPSSAPGEHERNDADEPRT
PAAGSTTPAAAVEIGDPVEFASPLEGDEDRVDAWHDDEPLRYRTVANILGNASTPPPAARLFAEVHLTHAGEPANFDQAK
DDPAWRAAMEQELKSVEQNHTWELATLPAGHRPITLKWVYKLKKDERGAVIKHKARLVARGFVQQEGIDYDDSFAPVARM
ESVRVLLALAAQEGWSVHHMDVKSAFLNGNLKEEVYVRQPPGFAVAGEEDKVYRLHKALYGLRQAPRAWNEKLDSTLKEM
GFQQSSHEAAMYRRSSGRAVLLVGVYVDDLIITGTNEKEVAAFKAQMMKAFEMSNLGLLSFYLGVEVRQSASGIYLRQTH
YAERILELGGMEGCNPAATPMEERLKLSRFSTAEAVDPTHYRRLVGSLRYLVHTRPDIAFAVGFVSRFMEKPTMEHLAAV
KRILRYLAGTLEYGLHFTRAPGSARFIGYCDSDLGGDVDTSKSTTGVLFFFGQCLVSWQSIKQKVVALSSCEAEYVAATT
AATQAMWLSRLLAELLGRPVDIVELKVDSKSALALAKNPVFHERSKHIRIKYHFIRSCLEDGSIRAEHISTGDQLADILT
KALGKTKFEELRGRIGLEAISAKEIKTKGE
>Copia-15_PGr#LTR/Copia 69-4179 via tfasty with TNT1, 61.9% SW:1307, 1 frameshift. [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MTXSHEATVAFDEKAGAKKMVVLTDDTFDSWRTSLINHLVLKNLEDLVLGGDPPAGVTDTIAQRKRIATTMIRMSLDKDN
ESRFVDRNKLRVFEPLVLFDNIVRYHVGKSSENAASIWDRVISSTWLEGDLERSVTKFRNDFNLLMEIKPKFHRATLDSV
WAHIILRRLPSSFDLIATILLRESSGDEDLTLRKVFNEIHLFVNRRSQKEEINHALAVNTSQRPAFSSVAPVASSTPTSV
PVSSKKEKKKFVRESCEDGAHNPRTSHKESNCFTLHPELALAFFQAKQAKSVSVPAWDNMKTFAVGSSDSSGEVILDSGA
SVSMLNDRSFFDSVVKKPITLFLADGKKIEAEGYGDAVLTTVSGPLFLGSSIYAPALSSSLVAASSLLRMKMSVIPMDSD
RYQVVNHLGSTVFQGTYNEGVLVIPQIKLNVNSVTISPVTLHNRMGHPSDAFLKESFPGIPFSSVECDTCLVSKATRQPF
KGTFPEPAGILDVVHIDLCGPISPQTPAKSSYFLLLVDGKSRFRFVRFLARKSESFDVIVELFNLMETGTGRKVKAVVSD
NGGEFVNKKFSDYFKSKGIEPLRTAPYTPQQNPFAERSNRVVVEKARCLLRTGNLSLVWWAEAVNTAVYLVNRTPNASLN
MDSPYFVWHNDEPRLDHLKTFGCEVVYYEEKLSRDSKMSSSGAKGILFGYQEGHKNYRIWSCKKNVVMFTHNLRFKEDHF
PGIQLNSLPVSIDATIFDLPAGEEVVNPSPANVDLGDIGEGSTSHSEGFHDSTSVMEDTPRDSSSRSDDSQVEQLLQGSN
SHSNQENSESRSKKGYANVPYYDIAPRNITSTLSEDNIILTRRRANNIVMEPSASDPLSYKAAIASSSALDWVAAIDVEL
QNMERHVVWSIRKLIPGCKPLSCRWVFKVKILPDGEISKYKARFVAKGFTQEEGVDYDKTFSPTGSLVALRTVIALAAQL
DLELQQMDAVAAFLNSELDEEIYLEQPEGFDVGGKRGKVWHLHKSIYGLKQSARLWHQALSDFFAEIKFFPTVSDPCLFL
CKDDESTFIFVHVDDLIIGGKSINWVKELLSSRFEMVDLGECKFVLGIRVVRNRPKRQIFMVQDQYIKNILKEFGMSDCN
GTKTPLIPKINGKPNESEDVLDSSIDYRRAVGLLNYLVQCTRPDLAFTSSFLSQFLLAPTKKSVGGFHHCLRYLKGTMDT
GILLGKGESRIMSWADADWGGSIDGRSFSGNLVTFLGPVAWRCSKQPVTGLSTTEVEHRSCSESGQDILWLCSLLGEIGP
SLKVDMSGEPTLLNDNKGAIALLENPLYHHATRHINIRLHWIRFHIGRSFGLLFCRSADNLADFLTKSQPGAVLSKNKID
AGVITLENME
>Copia-15_Mad#LTR/Copia 89-4400 via tfasty with Copia-10_Mad, 1 frameshift. [Malus x domestica]
MGEPIPKASTDTQNPMETITDVSNPFILHPSDQPGNILVSKTLQGDNYNTWSRAMRISLSAKNKLGMVDGTIDPPSETDK
QFASWQRCNDMVLAWILNSVHDDIASSVSYYTTATDVWADLRDRFSQGNDSRIYQIKREIVEHRQEQQSISVYYTKLKAL
WDELASYNETPTCTCGGLKKINDRDEKERVMQFLMGLNDSYAAVRGQILLMQPLPDTRRAYSLVLQQEKQVEVSLNRNNI
NLHAMNITRNRDTAAPKGNTLQCSYCDQKYHTVDRCFYLYGFPPGHKYHGKSVKPPNKRKPAANQVTVETETTKGVDSRH
KATSSDGPKFTTEEYNQLMAMLKKSNVDGNPQHFANATGTITPSSDLSEKTLYWIIDSGATDHVSPSPHLLDKKSLSMLD
SVQLPNGGHALIDSIGSIQVTPHMKLDGVLHVPNFRVYLLSVSKLTEALRCIVIFFPDFCVIQDMDTRRTIGLGKRYNGL
YYLAPEQNLRLAHHISHNSTLWHQRLGHPSTGPLQTLTKQVPSIVFDSSHTCDICPLAKQTRLSFPSSFISSKAPFDLIH
CDIWGPHRVNSHSGARYFLTIVDDYSRYTWIHLMRFKSETQGLLRSFIAWVQTQFNCMIKALRADNGGEFTSLRSFFDNK
GIIFQTSCPSTPQQNGVVERKHRHLLNVGRALRFQAHLPQTFWGESIQTACYLINRLPTPLLSHKTPYELLHCQTPVFSH
LRVFGCLCYATNLHPHHKFDQRAKRCVFVGYPLGQKGYRVYDLTTHKKFSTRDVTFHETTFPFSTQPLDHHPDTPVLPIP
TDSLSHPNPPPPPTAPPSPTPTDTFLSTPTETAPPIEPSPPTPTEPHLVPPPLPTPHAPPAPRQSGRALKPSVRLQGYHL
YHVQSLAPSATSSSMSGTRYPLNHYVSYAHLSPSHRSFACAISTLVEPTTFAQANGDPQWRAAMDSELLALEQNNTWTLT
TLPPGHRAIGCRWVYKIKYNSDGTVERYKARLMAKGFTQREGIDYKETFAPVAKLITVRYLLAVASVRHWSLHQMDVHNA
FLHGDLSEEVYMQLPPGLHRQGEHNVCRLNKSLYGLKQASRSWFHKFSTAIGQAGYQQSMADYSLFTKVRGNSFTAILLY
VDDMIITGNDEAAIHDLKQFLQSHFRIKDLGHLKYFLGVEVARSSQGIAISQRKYALDIIDEAGLLGAKPAKFPMEENLR
LSPTEGQLLHNASQYRRLVGKLIYLTITRPEISYSVHILSQFMQQPRKPHLDAVHRLLRYLKGSPGQGLIFPSNGSLTLK
GYCDADWARCSLTRRSVTGYCIFLGGALVSWKTKKQSTVSRSSAEAEYRAMASATCELTWMKYLLTDLQIDHKGPAKLHC
DNQAALHIAANPVFHERTKHIEIDCHVVRERLRSGVISTTYVPTGQQLADIFTKPLGQSAFRSLLGKMGVLDIHTPP
>Copia-13_BRa#LTR/Copia 24-4150  [Brassica rapa]
MGDLIVSTAKPKEGGSSIKCPILNSTNYIVWALRMKVLLKVHKVWEIIETETIDEEKNNMAMALLFQSVPEVLILQVGEL
DTAKKIWDAIKTRHMGAERVREARLQTLMAEFDRLKMKETETIDDFAGKLSEISSKSAALGEEIEEPKIVKKFLKSLPRK
KYIQIVASLEQVLDLKTTSFEDIIGRLKAYEERVAEEEEDSQDDQGKLMFSNNESQTSRINNNYNNNYNSNYRGRGRGGR
SHYRGRGRGRYNEYKYNEVRDASRITCYRCDKIGHFAADCPDRLLKLQEAQEDESKDTQEADELMMNEIVYLNEGGILPS
NYEVNNEAESTWYLDNGASNHMSGDKRYFSYIDDSVTGKVRFGDDSRIDIKGKGTIEFTDRNGDSRRITDVYFIPELKSN
IISLGQATESGCDVRMRGEHLIMHDRDGKLIAKAVRSKNRLYKVRMELKETMCYLSTKMCDSSLWHARLGHINMETMRLM
IRRELVGGVPHIEVEKKICGSCLLGKQAKQSFPQATSYRAQCILELVHGDLCGPITPTTSAGNKYILVLIDDHSRYMWTI
LLKEKSDAFNKFKNFKKLVEQETRKHIQTFRTDRGGEFVSVEFNSWCDEAGIKRHLTAPYSPQQNGVVERRNRTIMEMTR
SMMKHMSVPNYLWGEATRHSTYLINRIATRAVKDRTPYEVYRGRKPNVSHLKIFGCIGYAKIDGKLLKKLDDRSRLLVHL
GTEPGSEAYRMFDPRTQRVVVSRDAIFDESKGWNWSSRREDQKDAGTFKVIVGEFGNHGLQETASDEFQTKTEENHERFV
EENHESGSEGDQEDDQSDETVTLRRSERIKSTPKYLEDYVLFSEEEGEILLMFLNDEPPNFDEAKKYKEWVRACEDEMES
ISRLKCWELVDLPPGAKPIGLKWVFKVKRNSDGSINKYKSRLVAKGYVQRFGIDYEEVFAPVARIETIRFLINLAATSGW
EIHHLDVKTAFLHGDLKEIVYVTQPEGFEVKGKEDKVYKLKKALYGLKQAPRAWNDKLNGILLGFGFTRCLKEPSVYRKE
TSEGLLVVAVYVDDLFVTGASMGSINGFKREMATKFEMSDLGLLTYYLGIEVTHHEGGITLCQKRYALKILEEAGMKDCN
PVQIPMDSGLKLEKSEKEADIDATGYRKIVGCFRYLLHTRPDLSYCVGVLSRYMQNPKESHGGAMKQCLRYLKGTTSYGL
NFERTGQRASRLVGYSDSSHNVDPDDGRSTTGHIFYFGSSPITWCSQKQDTVALSSCEAEFMAGTEAARQAIWLQDLLYE
VIGVPFAKTVIRIDNRSAIALTKNPVFHGRSKHIHTRFHFIRECVEKGLMEVEHVPGNKQKADILTKALARIKYKEMREL
IGVHDTDKCDFKLRRE
>Copia-11_PSo#LTR/Copia 66-4145 via tfasty with Copia-12_PR, 85.6% SW:4594, 2 frameshifts and 5 stopcodons. [Phytophthora sojae]
MTTKRAEVLLGSGNYFHWEYNMRMTLARKGLLAHLEVVKAENEITEAWLVNDAKALGIIAQGVEIQHQTKIRSATRAMQA
WNTLRGYYNHTTLHNRVAMTRRLDEFKMDSGTSMAKHLDAFDELIVGLQTMxEPVDVARQLVVLLSSLPSEYELIASILE
NAKDVTLNDVKEKLLKEFERLEKKDSTTEKASRANGNAGRFKGGRGNGRKGNGPKKNGAFKGKCCQFDQAGHTKRDCPGK
NGSAGNDTMFAVGEERLAGWVIDSGASSHMTPHRDDLFEMDVTVTGMQVTIADGKQLPAVGRRTVKLTGMDGKRITMKDV
LYIPGLNRRLLSVGKLAERGLSVEFQRSSCVIWGNTSAVAMGKKIGKAYVLDCEQESTRFVEYAGADSQWELWHARMGHP
SENGMAKTQRATNGLPTVGRSIKTLCGGCMQGKQTVTSFPARSTTKTSRVLELVHTDVMGPMRTVSKGGAKYVLTFVDDY
SRYVVAYFMKKKSEVADKLKEFKAFYENQWGERLKCLRSDNGTEFVNETVTDLCRRNGIMHQRTVPYSPQQNGVAGRMNR
TIMEKARSMLHYKGVSTEWWAEAVSTAVYLINRSTNTERSDVTPYEVSFKVKPRMDHLRVFGSPGYAHIDNAKRTKLEPK
SFRCMFLGYAENAKGYRVYDVDASKVKVSRSVKLDEREVSRIYDTHSPQHGTVIHVTKDGDVPAVPIEVERQPVEDEPME
AVEEPVPDVEMDEAEPEQEVLRLPAPERPAATGLELTAYRPPPQAFQDDHLVFHPEPERTRRSREPVFLLGNGDDEDGEE
RKSEGSDGPPSPKRPRIDEDGLIAEAVLAYVARIDDGTDVPATYAQAIASEDADAWRDAMDTELLSHNGTWTLVRRGTHT
RTIGSRWVFAKKRDQNGRVIRYKARLVAKGFKQKYGVDFFETYSPVANMNSIRVVLAACVADAYVMEQLDADTAFLNSEL
TDRVYMEVPFGIENTANYVCQLNKAIYGLKQAASAWNKTIHRMFLGNGFKSCGADQCVYVKRSRNGFIYMCLYVDDMIIT
AKTSGEVHEVKNALxNAFKMKELGTAKFILGMEIDHNKNARTLMIKQTRYIDDVAERFGQRNAKPVDNPCTSGLKLTKTQ
SPGTDEERTEMxSRPYRSLIGCLLYITTCTRPDIAYVVTQLSRFLENPGPQHWRAAIRVLRYxKTTRKYGIVYQGGDDSI
TVEAFTDADWGSNIDDRRSVSGVMVMIGNAPVVFKSKFQRTVALSSAEAEYMALSLCVQEVLWTRAMLKDMGKEQVDATQ
LLVDNQGAIALAQNAGYHARTKHVDIxHHFIRENVERGTVKVDYVETKQQLADMLTKALGTKTLKHLRDASGIKEKVTVP
>Copia-11_MLP#LTR/Copia 306-4670 via tfasty with Copia-99_AA, 59.2% SW:1411, 1 stopcodon. [Melampsora larici-populina]
MASLGSLDDRSNKLSGITALQPPGENSNYLDWEFALELYFVDAKLTYVLKETDVKARPSTWEDDNARVCTLISRAVEDVN
YQYLKPHQNNAAAMWKALRLAHEDSTSGGRMIVLNSLVTSKMGEMDLDTHLQSMNRLFEKLASLITEDQPLTADDIYTTS
LINSLPDDWAHVVTPLMQQKTTDSVSVIRALKNKQNRRNASGHVSVSKAFKSHSSSTPSYKTASLDQCQTNRKLKNAKFC
SFCKRTNHDVNHCWVLDKILEERKSMTTPSGSKVSSHSRPQPQSSKAGKTSVVSLGFSESESENESPAQAKFALVDVARI
SRLKEWNIDSGCSSTMTPNSSSLSGLTPATRSIHLADNSVIYATHSGTAQLGISGSIGHKSLFVPDLQEPLLSVSSLCDD
GFSVVFTKDGCRIHxSTDNLSDSLPVGNGVRRGNLYYLPEKVDTSPSISCFSSKADISLFDWHCRLGHIGLCPLKAVLKT
HDVKPSILNEIEVQQCDICVKSKMSRMSFHSRSPYRSIHPGDLIHSDVASFETPSREGFRYFVTFIDDYSKYTVIYPLKL
KSEVFMCFKNFCAVFCNLTSFNVKSLRTDNGGEYLGKEMQAYIIDKGITHNPGPPHSPELNGVSERSNRTIGNHLRCSLV
TSGMPKTFWADALRYLTHTLNSIPCYTPAGFHSPNSILSLPDPSISTLFPFGCQAYYKVPEANRKKLDQKAQAAVLLSYL
SDGNGYRLWDLRHRKVVKSRDVLFCHDIFPYSSTISCSPPSIEADIPWPSDYVSSPSPSLTEGQRRALRERRLSNSIHAP
RCRPIRTPAPTPVVTPAVSPISSPKAITISSDSPGSSPRINSPSSSSEDAPQERMPLPAEPSIPTVPKIIPETPSSQAEP
PTLSPSPLPMEESSSQPSVPDNSTKPVKASIKKSVKQPGPPTRRSGRSTKPPDRFGNWAGLVTDETASIDTPRTWKQLLC
SPNKSKWLKAADSEFSTLIGMGTWKLVPRPAKRKIIKSKWVFKVKKNIDGSLDKLKARLVAMGYSQVHGIDYSEVFSPTT
RMETLQLVFSLLACKKLVGRQIDIKSAFLNSLLTESIYMTQPQGYEDPEHPDWVCELQRSLYGLKQSPRLWNAELHRILI
TLNLTQSKYDPTLYFRLVDGKLVGALTAHVDDLAIVGEDSFVQEIINAISKKFEILSNKELTHFLSLDISRDVPARKVFI
SQSHYIRELMNRFLPSDSISVKTPTDSAFKDLTPRAVGEEPSPGHYLSLVGALLWVAQCTRPDVSFAVNRLSQYLRDPSA
SHWAAGLRVLRYLSWTVDLRLCLGGSATFSGYSDSDWAEDRHDRRSTTGYTFRFGHGPISWKSRKQTTEAEYKAMSDSCR
EAMWFKHLRFELNIRTPSAIPLHVDNEGAEALAKNPQHHSRTKHIHARFHFVRECVKNEDVTILHVSSKDMLADMLTKPL
PRVLLERHRAMFGLV
>Copia-11_SB#LTR/Copia 74-4786 [Sorghum bicolor] RLG_scIvana_1_2 product near-identical.
MASTSSERRRKTAKDVSNAEDSSGRAARLKAAEEAAAQAVQAARQAAAAAEEAARTARVLKEEIAAEVEGLEYEEEEEEV
KSPRRRSPSPPSRRRGRGGRRWESPVYDRVVYRDSGSGTNWPMLSKTNYHEWSQEMKLRMQARDLWDAVEGERVSFRDDQ
RAMEAIVAAVPKEMGIPLIDKRTAKEAWDAIAAARIGVDRVRRATLQRLRRDWENISVKPGESVEDFAFRLSTLHRQLVL
HGDQDIDERRVVEKYLRTVPSKYAQIVVAIEQFLDLDKLTLEEATGSLKAVDDREEQAPTEPITVGGKLMYTEEQWRARW
KKEKKGGGDDSAGSSSKNQRGGSQGGGGGRGRGGWRGKGRGSGCDGGRCGDTCHNCGQEGHWARDCPHPRRDRDGDRDGG
GDRGGGRGRGRRGGGRGGNQGQHAGGRGGAGGGDGGHNGRVQYAECEDNGALFLAHGLVDLDECAPTYTYAAQEVNLEEP
KARAFLGANGDEEKADVWYLDSGATHHMTGRRELFSDLNTDVRGTVRFGDESKVDIKGIGSIAFEGRTGEHRVLQGVYYI
PALKNSIISLGQLDETGSKVEIYHGVLRIWEHTGRLIAKVKRGANRLYTLQLQAAQPLCLAARRGDVAWQWHERMGHLNF
DALRRLGKEEMARGVPVIDHVEQVCDTCVTTKMRRRPFPATTQYRAKQPLELVHGDLCGPVTPATPGGNRYFLLLVDDAS
RFMWAALIPSKDAAAEAIKRIKLSAEAESGQKIRVLRTDNGGEFTVADFATYCAEQGIKRHFSAPHSPQQNGVVERRNQS
VVAMARALLKQRGLPARFWGEAVMTAVHILNRSPTRALKGITPYEAWHGRSPTLGHMKVFGCVAYTRKPSQLRKLDDRGE
AGVFIGYAEGAKAYRVFEPVSGRVRISRDVVFDEEHGWDWSSPESGPSVVNSSEFTVEYVWSEELSEPASPSSPLLPDSP
RTPAPNSPIGIEGAEGSASTHPQANSAPAALEVSPPPPSPQIEHATPLEDDDDRLDAYHEDEPLRYRTVSNIIGQQPTPP
PATRLFAELHLTHSGEPTSHTEAKRDPAWCEAMKEELRSVERNKTWELVKPPAGHRPITLKWVFKLKKDEHGNVIKHKAR
LVARGFVQQEGVDFDDVFAPVARMESVRVLLALAAQEGWSVHQMDVKSAFLNGDLNEEVYVYQPPGFAVAGQEDKVYRLR
KALYGLRQAPRAWNAKLDSTLKKKGFRQSNHEAAIYRRGSGNHLLLVGVYVDDLIITGAKEQDVESFKAEMKAIFEMSDL
GLLSFYLGIEVQQSIDGITLRQTHYAKRILELGGMVNCNPAATPMEERLRLSKKSTAKEVDPTQYRQLVGSLRYLVHTRP
DLAFAVGFVSRFLERPTIEHQQAVKRILRYVAGSLEYGLHFTKASSEARFIGYCDSDLAGDIDSSKSTTGCLFFLGNNLV
SWQSIKQRVVALSSCEAEYVAMTTAATQALWLSRLLAELLGKKVEVVELRVDNKSAIALAKNPVFHDRSKHIRIKQHFIR
DCVEEGSIKTKFVATNDQLADILTKALGKVKFEDMRSKIGIMKIKDGGSRS
>Copia-12_PSo#LTR/Copia 92-4987 via tfasty with SHACOP15_MT, 54.2% SW:1528, 1 stopcodon. [Phytophthora sojae]
KRTIPPFNGKDYEVWHERVKLKLERKKLWKYCMEDLVELDESKEAEAHATWTNEMAHAKEIINDAMTNHIMKTVKYEPTP
FRVMERLKKRFMGKTYLKYAEERAKLSRLRLAPNGNVPDHQSEMRRLMETIAGVGRPVDEYVKPALLIGSLPREYDHVVQ
PFLASHKPPNADDPPNYEQLELALEMAYDNRQGRKAEGAKDNDDEEKAFFAGGGRGGGRGRGRGRGGRSGGHGRGSGGGR
GSGGRGSQGGGRGTGRGQAGSGQKPGGACYHCHEAGHHVFDCPFLGKRPPAEDRSSTQAQKRVKMSGGKSAKAAETSSYA
NESDDSAYVILQVMKMEKPVADKPHDNWYLDSGASSHISNQLTDFMELTPLSARIRVGGKNSLGVEGIGTVVKELETTGG
RCSLTLRGVRYAPELQCSLYSVRRQLNQYLPERDRVKVHFDEADRADVILQAGVTTAQVDYTNLYRLKLERPQEVAMVAL
PARVSSLELWHSRLGHPGKNAFNALFSHDQWPLPHVNLRIPVGFNCETCVKGKLTRKSMKKSRTQTREWLVGEKVHVDAW
GPYAEHSYGGKRYFAVFVDDASRFVTVYLLEHRSEVYQKFEEYYQRVKTQQHVRMKALRSDNAKEFKKLQSTCDTKHGME
FDSSIKHTPEQNGVAERMVRTITERMRCMLVHFDLPEAMWGEAAMTAAYSVNIMPSSVRGMEVPYAVWHRQTPAYEKLRT
FGCAVLSYIDKVERRKMQAKAREAVFVGYSREKRGYRLLDSKTNKAFYSHTVVFYENKADRLLMASASTPSGASGKEYLG
VDRSVEDDIEPMLDEMHDDSNDGGSYRDDGDCWTGGASDSRDGGDYRTGGADDTRCDDRPGGAVEQDVRSDGTCGSKKRG
PGGDAAAPRPKRVRFAVFESGRSSKVAERDEGRGVSSTASGCDRSSKVAERDEERVNGHEADHLRGECVPGRKRKRSSGR
HKGPAADETRALPGSQEVEEVDSRSSAAERADSDSQVSSDAASVGRLSTPPCTALREYTGPRGTRHKDPPVTRSGRVSKP
PTWFGDYVYIAYENTNPDDDVNSLPAGWRKARAELQRAMANELILAWWEDYCCMSTGEFEEPDTFGDAMESEHSLQWKNA
ADDEFDSLMKNDTWELVPREKHVKVLQNRWIFRVKYLANGEIERFQARLVIKGFMQIDGIDYLEVYSPVVRLETLRVLLT
LAAVWDYEVHQMDVTTAFLNGAIDVEVCLEQPEGYKVKGKEDWVCRLKKSLYGLKQAPRVWFQLLKSFLEEQGFTMLQSE
ACVAVKVIDGQLVFIPLYVDDLILFAPSMELINKMKMFEDRFAMKDLGELHYILDWEITRNRAERTMFIGQQKYAETVLK
RFNMQDCNGCKTPSTADLKLSKAMCPTENDERQLMRSKPYRAVVGSLMYLMLGTRPDLAYLVRECSQFLENPGLLHWRAA
KRGLRYLKDTADxGVQLGGLAWSDQKLDDHLRAYADADFANRVDDRKSVAGYVTQFCGSIISWSSQTEKTVPLHTTEAEY
MALSLLVQEVVHLRQMLKELQVQQIQPSQVFVDNESAKKLASNPVFHSRAKHIDVRHHFVRERIDMKEIDVLRVAGVDNV
ADAFTKPLARPAFEKHRAAMGLLPRARFGDAS
>Copia-12_BD#LTR/Copia 203-4152 via tfasty with Copia-38_ZM, 1 frameshift and 6 stopcodons. [Brachypodium distachyon]
MGLADALKPDKFSGMYFKRWQLKAMLWLLTLKIFWVTDDKPEGxFICFGNLSEEAQKNFQDANVAFRGCILSVLFDRLCD
VYMHIEDRKELWDALDAKFGATDAGSELYTMESSNDYKMVDNRSVVExAHEIQIIVRELKLLKCELPDKYVARCIIAKLP
PAWRSFATSLKHKRQEISVEQLIASLDVEEKARAKDTIEKAADFPSNANMVQRNFRASRKNKWKKSAVVNNNKPAQTTTF
KKKKKVNKGEMNYFTCRELGHFSRDCSDRADRRGKKGxKTINVVTASNTDMYGILPIVLFVFQSPCWWIDTGANVHVCSH
ISLFTSYxHGRDSTILMGNGSHAAVRGVVTVGLKFTSGKIVRLRNMMHVPSINKNLVSGSVLCRDGFKVVLESNKVVVSK
HGQFIGKGYECGVLFRFFLSDFSDMSVNHICGTVDDDASAWHSCLCHVNFGLMSRLSTMSLIPTFTITKGSKCHSCVQSK
KLRKPHTAAEERNLAPLELIHSDLCEMNGVLTKCGKKYFMTLIDDTIRFCYVYLLRTKDEALDYFKIYNAEVENQLERKI
KRFRSDRGGEYFSNVFDEFCAEHGIVHERMPPYSLQSNGVAERKNRSLTDLVNSMLGTAGLSKAWRGEALLTSCHVLNKV
PNKNKEKTPYEEWIGRKPSFSYLRTWGCLAKINVLIPKKRKLGPKTVDCIFLGYAQRSVGYRFLVVKSEAPDMHVDTIME
SHDATFFANIFPMKDMHSIARIFSKILPESSMPESNTSNNESEHLEDDVEKNDNEAPSKSKRRRIAKSFGDDFIVYLVED
TPKTIAEAYASPDADDWKEAVQSEIDYILSNGTWELSERPHGCKPVGCKWVLKKKLRTDGTIEKYKARHVVKGYTQKEGE
DYFDTYSPVARITTIRVLLSMAASYGLVVYQMDVKTAFLNGxLEEEIYMDQPDGFVVKGEKRKVCKLLKSLYGLKQAPKQ
WYEKFDRTLTSAGFVINEADKCLYYCHGGGEGVILCLYVDDILIFGTNIKVINEVKSFLSNCFDIKDLGEPDVILNIKLV
KDESGITLLQSHYVEKVLSRFSFTDSKPSPTAYDPSVILRKNIGEGKDQLRYSQIIGSLMYLASVTTPDISFAVSKLSRF
TSNSGIDHWRALERILHYLKGTMSYGIHYSGHPAVLEGYCDSNRISEADDLYATTGYAFILGGGVVSWRSCKQTILTRST
MxAELAALDTATFEAEWLRDLLMDLLVVEKLVPAILMNYDNYTVITKVNSSKDNTKSSKHVRRRVQFVRKLKNSGVITVT
YIQTEKNLADPFTKGLSRNVIESASREIGLRPMNVVP
>Copia-15_PSo#LTR/Copia 16-3951 via tfasty with Copia-12_PR, 68.3% SW:2491, 2 frameshifts and 2 stopcodons. [Phytophthora sojae]
MSPSYADTVKLVEDDYFHWKFNMRMKLSRKGLLAHIVKPEFDQLSDRSTVQRKTDDLKALGVIAGDVSLTYQVYIRGATT
AAESWRLLEEQFNRNTLKNRLVVTKKLHNFKMEPGTRFAAHVDRFKELVLxMETIGEAMDETRQLVLLLGSLTDEYRMIS
TVLENTPNMTLAYAIQALSGVEVSEDSTSAREKAFATKKEFRKRGFSGKCFYCKKLGHKEQECRKKKADEGRGQVALEAS
DFAFTATGAMAKSEWLVDSGASSHMTSVRDKFVSMKELKTLVRITIADGTKIDAVAKGTVRLELMDGTPVTLSDVLYIPE
VDGSLISVSKLAEKDVDAQFSKDKCVFCFGGVTVMEAKRYGNVYKLKTVGDEMCRAATISRKEPWAVVHARLVQALRKLL
SMADGVPRIVGDVSTDNVCAGCCMGKVRADDFPRHPDNLGKSTGVLDLVHTDVMGPMQTKTPGGCTYAVTFIDDYSRHVT
VYFMKVKSEVLSKFKIFKAAMENATGKLFKAYLDRSAIKHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGIDKKWWA
ESVNTAAWIMNRIPNSVTVKTPHEIVHRAKPQLKNMKVFGAIGYAHIADEKRRKLDAKAFKCRFLGYEDGVKGYRVLNAA
TGKVQIVRTVKFMEEPDHLMTRLEIDDDEDSTPAAPSSGGVPALVPVRDVSTEVEVGVPTMSPNDVTTAGAIVPYTTHPM
ITRSRARHIEETNDPEEPGARKKQIVAPSEIRTKRQKVDQGRAKSDDTQLAIHGGMLMAATEEVPRSYQEAITSEDRAQW
KVAIASELKSLMTNKTWKLVSKPKHQRAIGCRWVFALKRDETGRVVWYKARLVAKGYSQRHGIDYDETYSPVVYLNSIRA
KLAKCCADGMEIDQCDIDTAFLYGKLEEEIFMVLPEGLRELLDLAEAQGEDDVVCLLLQSLYGLKQASRVWNGTIDAHLK
SIGFRDADADPCVYTRGAGDDECIVCLYVDDMLIASRQRTIIDSVKAGIADKFRIKDLGRARFILGIEIDYDMEAKTLGI
CQRAYTASIIKKFGQKNAKPCLTPLDPSVQLTKADEHQTEEDKAKMKSNPYRSLVxSLMYLACGTRPDTSAAVAKLSRFL
ENPGEKHWDAGIRVVRYLLKTKNLGIVYDGLLGTELVAYSDADWAGNRDDRRSVSGIMLMMCGAPVVWRSTFQKTVALSS
TEAEYMALSECMKEVVWMRQLLKDLGAEQDGPTVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKITSGVVELDYVE
SKNQLADFLTKGLSTKTLRYLLERSNITEMLG
>Copia-21_SB#LTR/Copia 118-4386 via tfasty with Copia-28_SB, 1 stopcodon. [Sorghum bicolor]
MGAEGSGEKEVMERVFNQAAGNLTWPMLTRTNYQGWSSHIQCNLEAMFLWDAIEPGGDKIERRRDRLALGAMLRGVPVEM
HSMLLNKKTAKEAWEGIKTMRLGADRVKEVNAQKLLVEFESITFKAGETIDDFAIRITKLVTDLRGLGEESVTDARMVKK
FLRVVPPRYIQVAVTIELFKDMKTLTIEELIGHLRAAEDRFEPSVEQVTDKTAKLLLSEEEWAEKNKSRMLSDLSNNKGG
NSGQYGKKQQKPWKRKADGRGGGRDGEQASNTPRxNGKCRKCGIFGHWARECKNAPQKERQEAAHHANSDGENGALLVAQ
VCNVVRSTTQQVFLNQERVFPSSYDAGTWVLDTGATNHMTACRESLASLDETIKGAVRFGDGSKVEICGIGAVTIAGKNQ
DHRVLTEVYYIPSLRCNIVSLGQLEEAGCRVEIDHGVMQVFERSQGNLNVLIRAERKRRLYVMQVNLTVPVCLLTKMDET
AWLWHARYGHLNFRSLRDLGVKEMVEGIPLIQRGEQVCDGCALGKHHRAPFPRQSAYRADKGLELVHGDLCGPISPATPG
GKLYFLLIVDDFSRYMWLDLLKSKDEAFASFKKIVAAAESESGKRLKAFRTDRGGEFNSGVFTVYCNEHGIKHNTTAPWT
PQQNGVVERRNQSVVEMARCLLKSMKVPGRFWGEAVMVAVYLLNRAPTKSLNGKTPFEAWFGKKPGVRHLRTFGCMAYAK
KLGPGVSKISDRSIPGIFLGYEPGSKAYRIYDPVNRKLVISRDVIFDESKGWNWGEKRTGIAEADAAVEPIFSMAWPDEE
QVTAADPTIGGAADYQEEGGDLVDQNEPASPVQSIPPHGGGGDASPHTPAHSIAGSNGGNLIQWASPPTGGSVNSEGVPL
RYRTILDLLDTTEEVQLEYSGACLIAAEEPSSVDQALTELCRRNGMKSEMQAIEANKTWEVSPLPKGQKAIGLKWVFKVK
KDPEGNIVKHKARLVAKGYAQVQGVDFDEVFAPVARIETVRVLLALAAQGGWQVHHMDVKSAFLNGDLSETVYVKQPPGF
IVGDGDKVLKLRKALYGLRQAPRAWNSKLDKELLALGFVKSKMDHAVYKRNSKASFLVVGVYVDDLIISGPDVDGINQFK
AEMKRKFSMSDLGLLSYYLGIEVKQEGEGITLSQGSYAVKILEGAGMIDCNPCDTPMEPRLKLYKSKEGEAVDPTAYRSI
IGSLRYIVNTRPDLAFSVGVVSRYMEAPGKTHWTAVKRILRYLKGTMGYGCKYERGTELKPFLLGFSDSDFVGDAEDRKS
TTGVVYFLGSSLVTWASQKQRIVALSSCEAEYVAPAAAACQGVWLGRLIADVLGTKVAPVKLMMDNMSAIALSRNPVHHD
RSKHIDTKYHFIRQCIEEGTVEVEHVGTEKQLADIFTKSLGRVKFVEQRSALGVVEVQQVRGR
>Copia-21_Mad#LTR/Copia 767-4816 via tfasty with Copia-41_Mad, 1 stopcodon. [Malus x domestica]
MKTLNLVNIPILTGGGNYKKWRREMSLLLTLNEFDIAIENPKPVVNDQSTRAEKADHLNAIEKKFQESEKAEMSQYMSLL
TTYKMEGTCSIRDHIMKMSDAAERLNAMDINIGEKQLVFMILQALPSKYSQLKISYNTQDKNWDVGQLIAQCVQEETCQK
QERGKEVEDINFVQTINDKKQFNNRGFSGSGKSSKPFKNSNKFSNSAKVVDSPRKSIKFKAKPKDVSKLKCFWCKTKGHL
KVNCEIFKDYVKSKEREQVLVCIESNLCEVPVDSWWFDTGCSVHITNSLNGFQKQKEVGNAIYNVFVGEGTKVAVESVGI
VKLVLCFGFVLELKDVLYVPKMRRNLISASKIVKDRFSFLGDDECLKIFKKNCHNTILGTALLSDNLWNLNCPVKALNHT
IFSISAKRMIGQDTSYILWHKRLGHISKERLIKLSKTELIPKLDLSTTTECVDCLKGKMTNFRKTDAKRSQGLLEIIHTD
ICGHFPVKTICGNKYFINFIDDFSRLGYTFLISEKADALKCFIIYKTKVEKQLGKVIKIVRSDRGGEYFGRYTELGQQKG
PFALYLEHNGIIAQYTTPGTPQQNGVSEKRNRTLIGMVRSMMTRSKLPGFLWGEALKTANYIMNRVPSKSVPSTPFELWH
GRAPNFDYFHVWGCKSEARFYNPDERKLDPKTQSCYFIGYPEKSKGFRFYVPQGHTRIQETHNAVFLEDEDVSHLSRENF
IFEEMNADGGDHVTMDYNQVPLFPNQSSTAIEDISADLGVPDDNSVGVDYTTQAATIPFAEIRASVSVPSPDEIRRSTKA
RKTTAINDYVYLQETEFDIGDIDDPLSYTQAIESPQAVLWNNAMKDELDSMFKNQVWTLVESNSEIRPIGCKxVYKTKRD
ANGRIERYKARLVAKGFTQREGIDYNDTFSPVSSKDSMRVIMSLAAYFDLELHQMDVKTAFLNGDLQEDIYMKQPVGFVE
RGKENLVCKLNKSIYGLKQASRQWYLKFDQIVSAQGFVENKLDDCTYIKFSGSKFIFLVLYVDDILLASSCSHLLQSTKR
MLSDNFEMKDLGEAHYVLGIEIVRDRKMRLIGLSQKGYIERMLEKFHMESCNSGQVLVNKGDKFSKIQCPRSDLEVKKMQ
AKPYASLIGSLMYATICTRPDIAFIVGMLGRFQENPGEAHWVAAKKVLRYLQRTKTHMLVYGRTNSLELMGYTDSDLAGD
VDDRKSTGGYIFILNGGAVSWKSAKQTVIATSTMEVEFVACFEGMKQAAWLKNFLTDLKIVNSVQKPVKMFCDNNSAVFF
AKNNKRTSASRLMDVKFLKVREQVKKRVIEVQHISTTMMIADPLTKALSIGEFKKHVSSMGVLEGFDQWE
>Copia-22_CQ#LTR/Copia 113-4150 After removal of 625 bp insertion (706-1329) [Culex quinquefasciatus]
MAEAVKFNVAKLGNGNYPSWKFRMEMLLVREELFYVICDPRDDPVTEAWTKDDRKARATLGLCVEESQFGLIKGKATAKE
MWESLQEYHEKHSVSSRVLLLKKLCSKNLQENGDMEAHLQDIEVMFDRLQGANLKLDKELKVALLLRTLPDSYNGLVVAL
ESRPDADLTLDFVKSRLLDEHQKRLERGNIAGGSKLLKTVASKPGEKTCFFCKKPGHFRKNCRKYQASLKGDSGETRHQY
APRAKKAAEASPLLFWTKVGTASARMVDAEQAVRCSVSGASSLWYVDSGASQHMTCNKNFFTELTEDVQIGITLANGNTT
HSQGMGRGLLRCVDDEGRERQIQVQNVLYVPELDGSLLSVSTIVNNHFVVSFTARGCKVLDESGAVAAVADLVGGMYVLK
TNEKSMVSATARHTEFCPHTWHRRFGHRDIDVIDQIKRNDLATHMKVIDCGLQSVCECCLECKLSRKSFPKVAENRAKSV
LDLVHTDVCGPFQNVTPGGKRYFMTIIDDFTRYTIVYLLANKSEVVNKIIEFVRLVENQMGEKPRVIRSDNGGEYATKAL
EEFYAAEGIKAEYTCPYSPQQNGVAERKNRYLQEMALCMLHDAGLPKLYWGEAVMTATFLQNRLPSRSIGCSPYEKLFNK
KPAVKDLKVFGSEAFVYIPAERRRKFENRARKLIFIGYCTQNKAYRFLDRKTGRIIVSRDAQFLELGAEIGEESASDKTS
TNDVEVVIGEKVEKVREELQAPEDLDVSDDSFYDPEEDASEEAVEESAASGGSAEPAGPSAAGEPAASAQNGADGNRHSQ
RSNFGVPPQHLNDFVVGLAAQCSDEPGTYREAIAGPEKKQWLAAMKEELRSLEENNTWSLVTPPAGCEPIGSRWVFKKKE
DAEGKVLRFKARLVAQGFSQKFGRDFDQVFAPVAMQSTFRVLLSIASQKKMDVYHVDVKTAYLYGTLEEEIFMRQPPGFV
VPGQEKCVCKLNRSIYGLKQAARVWNSTIKDFLIAIDFVQSSSDACLYMKKLSDREWMYLLIYVDDMVIVCREKNQMLRV
EEELKKRFRITSLGPVHLFLGIAVNQDADGVYSINQSSFIRKIAKQYGLDESKKSKIPMDTGYYKFAEKSEVLPNNTEYH
SLVRSLLYVSTNTRPDIAAGVSILSRKIQSPSQADWTELKRVVRYLVGTADHRLQLGASEADRMSALEGFCDADWASDTS
DRKSNSGFVFRFGEATISWASRKQTCVSTSTMEAEYVALAEAVQEVVWLRRLLAELGEKQQTPTTIFEDNKSCLDFVALE
RQNRRSKHIDTKFHYIKDAATSGQIVLRYCATTDMLADIMTKPLGAVQVAKFVGMLGLKAGGSGHR
>Copia-23_BD#LTR/Copia 2058-5536 via tfasty with OSR3, 3 frameshifts and 1 stopcodon. [Brachypodium distachyon]
MTADEFQKWYEFNGMKQGNKEYYEATTVFANNCGNISTPGEFSCNGASWLIDSGASRHMASSFEDFMRYRPVSKGESVKL
ADGSKQHVIGSGTIVCSPDISLPSVLHVPSFPINLLSISCITNELNCAAIFLPTRCIFLELGSGRRLGTGSMHDGLYYLD
KEVSPLVAAVLSPSPLEELLLQHRRLGHPSFVVLGQLYPDLNKVKKENLVCDACQFGKQTRSSYVSSDNRSDTPLEVIHS
DVWGPIGVSALNGYRSFVTFIYCCTRVTWVYVLRNKDDVFECFVDFHNMIKTQYNACMKYIRTDNGTEYVNKEFDKYLSS
FGIIHQTTCPGTSEQNGLAERKNRHLLEVTRCIMTAMNVPKILWSEAVMTAAYLINRMPSRVLGYKTPIECLTGETTYVV
PPKVFGCVCFVKDYKPSVCKLDPRALKCAFVGYSSKHKGYKCWCPSERRMFVSADVVFREHVPFYGEPTDLSDVFPDLEF
NEVSGEDCDIEENGTTSQEMIIGVIPAETTQKQRQGEQQNESSNEAVRWPKPNEEKEVWVYARRRCAGEQTQVVESEAET
HGQHEEQQVDQQYNTQGQTDDTTLSSDSIIVSPQYDDLDVPIAHRKQPRPNVGKLPFKLDPYDVSNYVTYDNVGSSYGAF
IAALDSAGPLPRDWQEAKLNPKWRAAMLEEMDALDKNNTWVITSLPANKKVVGCKWVFTLKQTPEGKVERNKARLVAKGY
SRTYGVDYDETFAPVAKMSTIRTLISVAANRKWKLFxLDVKNAFLHGDLQEEVYMENPPGFGAPETEGKVCRLKKSLYGL
KQSPRAWFGRFRKEVCSLGFQQSNADHTLFFKHHQGKIVILVVYVDDIVITGNDDEEIRNLKKMLTKSFEVKDLGFLHFF
LGIEVAYGAQGIYLTQRKYLLDLLTEIGMLGSKPAATPIELNLRVTADLGEPVDRGRYQRLVGRLIYLSHTRPDIAYAVS
LVSRYMHDPRSSHLDALNRILRYLKGCLGKGILFSNHGHLEVEGYTDADWAGCLDERRSMSGYCTFVGGNLVSWRSKKQS
VVVRSTAEAELRSMALGLCELLRLRILLTELRLFRGGSLRLYCDNQATINIVNNPVQHDRTKHIEIDRHFIKEKLDEGEL
QVGFVKTGDQLADLLTKGVSVVSFSKLCDKMGLLNIFVPS
>Copia-22_Mad#LTR/Copia 395-5110 via tfasty with Copia-88_Mad, 85.0% SW:5170, 3 stopcodons. [Malus x domestica]
MAMNSVKIEGLLGMITVKLQEDNFVKWNYQFSSVLRGYDLFDFFTGESQCPPKYCITPEGGVTKEITQAYKQWIQKDLAL
LSLLIATLSDEVMDHVIGCKTAQEAWESLQERFASISVVRINQLKTEFHTAQKGSESVDKFLLRLKVIKDQLVAAGERIT
ENDLMIAVLSGLPPEYEVIKTIILARDTSISLKDFRAQLIGVEGSLETRLTNIAGPMSAMYVRGDSTHNQGSQGGYQSFE
QGESSHSQRFNGSSSFNGGFGFTGNGGRSFQQRSNFNNNRRFNGPNNNTRSYSNFGNRSYGFNDSNGSTSSNGSVDNQKG
QYGSSNALPGGSGFRQGSNWHGNTNYKAAISPECQICSRRGHTAPNCYYRTDSDQVFKGPVFCQIYGKKGHTAIQCYHRN
NYSYQGPPPPQSLNPTPAGMAAQSSNSTQVAQSIHGFSNADTxVVDTSASHHITANLEHINQVTPYNGESKITIGNGEGL
LVKNIGVSKLITDTHTFVLNHVLHVPLLAMNLLSVKKLCRDNGCWFICDDLVFFIQDKATRVILYQGKSDDGELFKIPAS
VFRSSFAAKLEKCSAFLGKKVRSSIWHKRLGHPSEEVLSIMLKTAGVSVHKDPCSTMCSACISGKMCRLPFSVKQVKTTH
RFEKIHSDVWGPSPQKSIEGYRYYVSFVDDFSRFVWIFPMINKSDVFQIFATFHAFDNTQFNSSIKCLQTDGGGEYVNNV
MKSFLDQKGITHQISCPYTPQQNGVVERKHRHLAETALSLMTEGSIPAIFWYHACSYAAFLINRMPCTGLDNKSPYQILF
GENAAIHNLKVFGTAIYPYLRPYNQNKLQARLKQFVFLGFAMGYKCVICYDILSRKFIISRHVIHDKDVYPFKHSSVLKG
VHSSGSSSSHQNHIAIxVPIPVSSIQEENSGSHAINDVELQSSSPSLTISATNSDTGTQSRESRESVLDSQQYQAQNTSH
HHSGTSSMLPVHTDSQLQVVLPFSLQSESSINTANSTDINNVGSVHQMVTRLKSGVIQRQDYSAFIASFPELQSLKLTTE
DHFGGGYSFVSAITDATEPTTFRKAALLPQWQQAMQEEYDSLRSQGTWVLVPSLSDRSIVGSKWVYKVKKNPDGSVSRYK
ARLVAQGFSQEQGIDYLDTFNPVVRHTTVRIMLALAATNHWQLRQLDIKNAFLHGDLQEEIYMKQPQGFVDASYPTHVCK
LIKSLYGLKQAPRAWNSKFTSYLAAMNFQASASDTSLFIKKDDSDIVILLLYVDDIILTGSNSVKIQKMIDELSEVFELK
DIGQLTYFLGLQISYKDNGDIFINKSKYIRDVIHKAGMDSCKPATTPCKPHDQLVIFEGSLMTDPSLYRSIVGSLQYLTF
TRPDIAYVVNTVCQFMQSPTEMHYAVVKRILRYLQGTQHHGILYSAAKVTTLTAFSDADWAADINTRRSITGYIVYLGNN
PVSWQSKKQCSVSRSSTDAEYKALAHTAADVAWVRGILKDLKVFLSLPPTIHCDNMSAIALTANPVFHSRIKHLDTDFHF
VRERVQQGDLxVVYIPTEDQTADVLTKGLHSPAFLRHCYNLRLSTPATIEGD
>Copia-21_BD#LTR/Copia 108-4287 via tfasty with Hopscotch_pol, 2 frameshifts and 2 stopcodons. [Brachypodium distachyon]
MSVSSLGGLISVRLNRDNFLLWRTQVEAALCGPNLFGHLDGTIAAPDDMIIEGTGDAARRVVNTAYMRWFQQDKTVLSVL
LSSMTEGILAQVITLKTSATVWAALIAMFSSQNRARVVQIRYQLSNLKKKNMSVADFFNKMKAHADSMASIGKMLDDEEI
MGYMLAGLGPEYDPLVTSITTRTNPVSLNEFYSYFLIFKTCLELNSAGLEIQSSGNSVSCQSNNNNRSRSATRGDRGGRG
DRGNSNQQQSRGQQSYDNNGVGKGNGRPKSTCQICHKYGHDALRCRNRFNHAYSVESSRTDNSSSPTDYHVDTNWYADTD
ATDHLTSDLDKLTMHERYTGKDQVQVANGAGLEISHVGHSVLPGSSSQLHLRNVLHVPHIHKNLLSIYRLVSDNDVFAEF
HSKFFCVKEKITKKVLLLGRSKGGLYPIPLYCSSSSFISRQGLSSITSRQWHQRLGHPSSAVADIILRSNKISCAVDPSV
CDACQQAKSHKLPLPDSTRVSTFPLELVHSDVWGPALTSVGGFKYYVSFVDDFSRFTxVYLLKRKSDVEAAFHNFQAHAE
RSLNSKIHAVQSDWGGEYHRLHQHFQKLGIAHRVSCPHTSAQNGIAERKHRHIVETGLALLAHASLPLRFWDEAVLTACY
LINRMPSKVLLNDSPISRILNITPDYSFLRTFGCACWPYLRPYNNCKLEFRSRPCVFLGYSSMHKGYKCLDRSTSRIYIS
RHVVFDEHVFPFASSSTGSSSSKPSTFPSSEPVIHLDSMRHYHSCDTNPSAGPESAATPSTTTATDWSPATTPAVATTPP
TMSPVTVDASPPATPLAASTPAAENPAATDHMPPSPLAMTPPAPGRSTVVTRLRNNICMPLKPTDGTIRYDPNRHAFFAV
PSSHRLALTELAWRAAMEAEFSALQDNGTWNLVSRPPGxHVVSCKWVFKVKEKPDGSIDKYKARLVARGFTQRPGIDYLD
TLSPVVKPSTVRLVLFGAISKRWHLRQIDVNNAFLHGVLTEEVYMQQPPGFEDPRSPEHVCRLHKSLYGLKQSPRAWHAR
LSDKLQQLGFVPSKADTSLFIFAQGPVMIYMLVYVDDIVIASSCSKASAHLLQQLQAVFPIKGLGPLCYFLGIEATATSG
GMNLCQQKYAVDLLHRAHMEHCRPVSTPMAVQDPLARDVGTPLRDEDVFRYRSMVGGLQYLTMTRPDISFAVNKVCQYLA
APTDTHWEAVKRILRYVKGTMTTGINILRFGYTLLSVFTDADWAGCSDDRRSTGRFVVFFGPNLISWSARKQPTVSRSST
EAEYTALANGAAKVSWVQSLLRELLIPQPRPLVIWCDNLGATYLSANPVFHARTKHIEVDFHFVREKVALGALEVRFVSS
GDQLADAFTKPATKLMWIKCDAIFTSEPLVKIEG
>Copia-16_BRa#LTR/Copia 39-4156  [Brassica rapa]
MAERLGSYPFPSKIHIASSVTIKLSDCNYLLWKTQMESLLRSQKLLGFVNGQIPAPSATTVTTTDGVQTTTPNPDYDNWI
CTDELIKSWIFGTLTEEVLGFVHCLPTSQDVWLSLANNFNRSSIAREFELKRKLQLMTLQGREFSTYCSEFRTVCDQLSS
IGKPVEESLKIFSFMNGLGRDYDPVCAVIQNSMSRTPPPTFNDAVSEISAFASRLQSYENISETTPHMAFQSQRSNYNQR
GRGGYSRSGFNRGRSGYSTRGRGFPQHQSNIHNSGERPTCQICGRVGHTAIKCYNRFDHNFQGQQLNQAFSSLRISDNSG
KEWFPDSGASTHVTASPNMLQTSTPYEGNDTVLVADGTFLPITHVGSTTISSSSGTIRLNDVVVCPDIQKSLLSVSKLCD
DYSCGVFFDANKVCVIDLNTQKVVAKGPRRKGLYVLEDQELSALYSNRQCSASEEVWHYRLGHSNSKILQQLKNSKDIIV
NKNKSSISPLCEPCQMGKSSKLQFFDSDSRVLQPLDRIHCDLWGPSPVVSNQGFKYYAVFIDDFSRFAWFYPLRTKSEFN
SVFFAFQKMVENQFASKIKVFQSDGGGEFTNHQLKKHLLENGIRHRISCPYTPQQNGLAERKHRHLIELGLSMLYQSHTP
LHYWVEAFFSACFISNLLPSTALEHKSPYETLFKAKPDYTFLRVFGSACYPCLRPLAENKFDPRSLQCVFLGYSSQHKGY
RCLYPPSGRVYICRHVLFDEECFPFKQRYQSFVPRYKTSLLKAWQTNTSSTETSATQHQSRELPAPIFAPATTDTLTENP
AVTEDNEATETDNVADHTATPEQVEEDQNQNVHSMITRSKAGIYKPNTRYALQASKYTVEEPKTITSALKHPGWNVAVQE
EMQRIHMLNTWSLVPPTKDMNILGSRWVFKTKFHPDGTVEKLKARLVAKGFDQEEGLDYLETFSPVVRTATIRLVLEVAT
AKGWIIKQLDVSNAFLHGELKEPVFMLQPPGFIDETKPSYVCRLTKAIYGLKQGPRAWYDTFSNYIIEFGFKCSKSDPSL
FTYHKNGQTMVLLLYVDDILLTGSHSQLLNDLLETLNRRFSMKDLGPPRYFLGIEIESHDDGLFLHQTAYAKDILHQASM
TNCNPMATPLPQHIENTETEKFSEPTYFRSLAGKLQYLTITRPDIQYAVNFACQRMHSPTDTDFSLLKRILRYIKGTINM
GLHIKKHCDLILTAYSDSDWAGCKETRRSTTGFCTLLGPNLVSWCTRRQPTVSRSSTEAEYRALTETAQEITWNCALLRD
IGIAQYQPTLLQCDNLSAVYLSANPALHKRSKHFDTDYHYIREQVALGLIEIKHVPAKLQVADIFTKPLSRKEFVNLRSK
LGVGWSPSPSLRG
>Copia-16_BG#LTR/Copia 96-4319 64.3% sim to Copia-26_BG, SW:1999, [Blumeria graminis]
MANLPSNPISSTSDKDNERFFAKRLNCTLRNMSFSNVTQLVGHNNYESWAITMEAIWRGQKLFELVVNGKKPKEDACLEE
QEAYSELSTIAVNIYILVVSPSILRKILKLQDPHLMWNHLSAEFHRTTKFTLVHQLGSLMSLSSTYDPSGTMTSFIDIYE
NEYFRTTSLARESSSLSRQKIADFLDDDEIKRDMILACLSRHHKNIVDNLVTKDNLSYTEVKQRLLDLDHEFPIQSSSHS
AHVTHHRRPKNDTSKASRPHKVFKSKHPKDSKPKECSYCRRHFPLEYRGHVWNACVRLRERNSSIDKGSKDIQERANAAV
SGPQGVSHHPFYFDTCATAHMCPYPERFERLSVCAGHVMSSSNEKISIEGKGTVLLNCILSNGNISTFKIDDVLYVPKLS
LPLFSWKKARSKGYMLQDNGTTMKIYKNNKIWLEAYYNGPLPVIKEMANSYETACSTFEFWHEALCHSAPSMMSKTDKLI
QNSGIIPSPPENFYCDACMSSKSVHHKPPPSIFRAKHKGEYIHSDLAGPFPVPSYGNPLYYISFIDDATRCTTIRSLRYK
SDAAQAIIDFITALETQYNCKIKFLRTDNGGEYVNESLSKYLAQKGISHHLTPPYSPESNGVAERLNRSIAEGVRAMLIT
VKDKRLWAEAAQTFVYTKNRTTHGSVNGQTPYEAFHERKPSILHLQPFGRECYVHVPMAKRPSGSKLLPRAEKGLFVGYT
EVDHHYRIFVSQRKQIVISGDVELLPYHVDNSVSEKTFDSYPHTINQPDLSTSSLMLTSLSNPPNVGQEQDIRNIHQNQD
PCLAVQSNLREPSLQEPSSIPTTVQIEPQPTAALSNPPDPSNEDSRTSVNSRPKRTIRPRTYEDTITGEWWKASRDLPQP
ASQISTCGNGNELALLNIHDESEPSSYSVAKSSPNWAYWEKAFDEEIASLKDNDVWDVVPRPTGRKVVNGKWVCKIKRDA
HGEVERYKAHYVAKGFSQIQGLDYDETFAPVVRLDSLRLILAIAASKKWKTRQLDIKTAFLYGVLNEDIYMELPEGYRQG
DHVAKLKRCIYGLKQSPREWFFRLAEYIIPYGLAPSLFDPCVFIHNTGKMIIAVYEDDIVLIGEQDEVIEDLVNHFKTEL
KVKDMGTLHWLLGIQIEYSNVGITLSQSAYINRVLDRFSMQDCNTVSTPIECNQPLKAAQNGEPRANTTLYQQIIGSIMY
IISATRPDLAYAISHLSQFNSDPSVTHLGAAKRVLRYIKGTKDVGLLYKFESPLVLNGYCDASYGNCLDTRRSFSGYLFQ
LGQSTICWKSRKQRTVAHSTCEAEYMALSYATKQFLWIVRGLHQILDRNIPASLSTDNNSAIDLAHNPKLNDATKHIDIA
YHFTRERVEDGTLTLLHIPSADNLADICTKGLPKPRLMHLCTNIFGTK
>Copia-16_SI#LTR/Copia 53-3990 via tfasty with Copia-102_AA, 72.2% SW:2599, 3 frameshifts and 2 stopcodons. [Solenopsis invicta]
MADTTKTTLAKLNRQNYFVWKYRMEILLMKEKLWSVVNEDKPVTGTDGRSAEQVAAWQQRDDQARGWIGLLVDDSQFCYI
RNSTTAKKAWYALKAYHEKDTLSNKVTLIRRICCSKMEKSGNMDDHLTNLTGLFQKLTDLGEELSDSWIVGMINSLPRSY
DTLVTALKTRLEADLTLSLVQSKLLAEHNRRKEAHGGDGGEAVLKTIVRSTTCFFCKKSGHIKRDCTQYKNWKEKQNKKT
KTKEKQDKENKVPKLEKLNKVEQNQEFLFMVKAGSHAGWVIDSGATCHIASDERYFVSLDKTVRNNLNVANCEKVSVKGK
GTCVIPFVNVDGVESRATISEVMYAPDIDGNLLxVKKLLDNGYTMNFVPGACEILYKDRKMGIADEHSNLFRLRKPIRAC
MVREHSSKCIHYRHRVFGHHDPEAMKLMCLKELTNDMVIEDCDIKTLCEVCAQGKLTRMKFPKQSSSKSTEPLDLIHTDV
CGPMQTVSPSGMRYVLTFIDDFTRHTVIYLLKQKSEVEIKLKEYIEMVKTMFGRKPKVIRSDRGEEYVRKQVIGMLQNEG
IRVQYIAPYTPQQNGVAERKNRTLIEMARCMLFEAGLPYSFWAEAVNTANYIQNCSPSQSVDKTPHELWTGSKPGTKHLA
IFRIKRFVHIPSEERRKLNKVAAPMIFVGYDEHSKAYWCYDPLQKKMVISRDVRFTGKMYSASKVDINLSKGKISSEDES
ANVEIDLNKCDPEPVIVQEEWNDIREWNNDSEYESANERTEQSDNEEGKAEQQQQLRVSQRVNKGVPPRRFIEEINAVST
QVTEPKTLTKVMASEQNDEWIKAMTDEMDSLMRNGTWELCELPSDQKPVGCKWIFKLKTNADGSIKCYKARLIAQGFSQK
YGTDYDQVFAPVVKQTTFRILLTIAAERGMLVFHWDAKTAFLNGKLKEKICMKQPPGYERESALDLVCLLMKSYGLKQAA
KSWNKAIHDALEKIGFIQDDADPCMYSAKLSNEWCFIFIYVDDVVIASKELQVIESVKNALSSEFEMQDLGEIRHYLGLE
VNKNPGGYYQIYQTNYIHQVASSFGLSEAKASNVPIDPNYNKSKDKTEVLLNNTNYQRLIGCLLYISICTRPDISASVSI
LAQKVSRPTQRDWNELKQVVKYLVGSSKLKLTLxGNKAGVVFGYADANWAKSKTDRKSNSGYIFLVNGGIVSWACRKQTC
VALSTIEAEFIALSSACQEALRLHRILDDMKQPVSGPITIYEDNQSCLKLIEEEKLSNRTKHIDTKYHFVKDFVNRGEVQ
CKYCPTEAMLADLLAKPLPAHRFKALREDCGLV
>Copia-19_SB#LTR/Copia 39-4733  [Sorghum bicolor]
MSTSSQRARIAEAAAAAAAGAYAESGAVVNPGGDRARRLAAAEAAAAQAAQAAREAAAAAQEAAATAAALRAEVDRETRV
YGRRSPDPRRGNPSRSPERHRRAQSPSPARRRGRGGRRGSPVVQTVYKDGGAGTPWPMLTKSNYHEWSTLMRLKMQARQL
WDAVEYGDLPYHDDRRALEAIIAGVPQEMQVSLADKLTAKDAWDSIAAARIGVDRVRRATLQRLRKEWENLSFHPGEHIE
DFALRLATLKQQTILHGERNMDEERAVEKLLRATPRKYAQLKIAIETLLDFQDLTIEEVIGRLKTVDDLDDDPVHEPASV
GGKLMLTEEQWLARQKKKKDAGGAGSSSGEARRRPRGGRKQKGKTAKGGERDGGGQGAKAGGAGGDHKANRDDLCLNCRR
PGHWAKDCPEPRRERGGAAHVAQADDGDAALFLAHGFIELDADRGFCSKADVDINEPRARAFLNNGGEDMLNGWYLDSGA
THHMTGRRELFSDLDTSVRGTVRFVDASRVEIQGVGSIVFQAKNGEHRVLQGVYFIPALRNSIMSLGQLDEGGSKVEINH
GVLRIWDPRGRLLVKVNRGPSRLYVLHLDAALPVCLAARKDDTDWLWHERFSHLNFEALHQLGQHSMARGLPLIKHAEQV
CDTCLVTKQRRRPFPQKAQYRAEDPLELVHADLCGPVTPATPGGRRYFLLMVDDASRFMWVALLSTKDAAADAVKKIKAE
AEKESGHALKVLRTDNGGEFTVAEFAGYCAGEGVRRHFSAPHSPQQNGVVERRNQTVVATARALLKQRRLPAKYWGEAVV
TAVHLLNRSPTKSLLGKTPYEAWYGRAPSVSHLKVFGCVAYVKDLGQLRKLDDRGRPGVFIGYAEGAKAYRILDPATQRV
KVSRDVVFDEGRGWDWSTPGAGCSAAAGSEFTVELWTPGDQGGAPEDSSSASQAPGESEQREPTPIGPSARTPSPSPTAP
PRPASPAPPSSGSASSSTPAASPGPAEDGGRMEFATPLEEDEDRLDAFHDDDEPLRYRMVGNILGDTPTPEPPPRLFAEL
HLTHAGEPASYAEAKEDPAWRAAMEQELASVEQNSTWELVNLPAGHRPISLKWVFKLKKNELGAVIRHKARLVARGFVQQ
EGIDFDDAFAPVARMESVRVLLALAAQEGWRVHHMDIKSAFLNGDLKEEVYVKQPPGYTVAGEEGKVYRLHKALYGLRQA
PRAWNAKLDGTLKAMGFQQSAHEAAMYRRGSGRTVLLVGIYVDDLIITGAEEGEVEAFKAQMKKTFDMSDLGALSFYLGV
EVHQDATGITLRQTHYAKRILELGGMDGCNPVNTPMEERLRLSKNSTAAQVDPTHYRRLIGSLRYLVHTRPDLAYAVGYV
SRFMERPTVEHQGAVKRILRYLAGTLDFGLHYTKAPGGTRFIGYTDSDLAGDVDTSKSTSGSLFFLGSCLVSWHSIKQKV
VALSSCEAEYIAASTAATQALWLSRLLAELLGRGVEVVELKMDSKSALALAKNPVFHEKSKHIRIKYHFLRSCLEDGTIK
AEHVSTTDQLADILTKSLGKAKFQEMRGRIGLRQIIPKAHKAKGE
>Copia-17_CP#LTR/Copia 64-4078 via tfasty with TTO1_NT, 87.2% SW:4569, 1 frameshift and 1 stopcodon. [Carica papaya]
MMEVNVSKMVCLDDTNYYKWKGKMRDLLVVKRLHLPVFASQKPESKSDEDWEFENLQVCGFIRQWVEDNVLNHIANETNA
KTLWEKLETLYASKTGNNKLFLLKQAIRLQYREGSSILDHVNEFQGIFDQLSGMGVKFDEDVIGLWLLTTLPDSWENFRV
SLTNSAPDGVVTMQYARTGVLNEEMRRRTQGTSSSQSEILVTENRGRSKSKGQDQNRGKSRSKSKSRYKNLECHHCGKTG
HIKKYCYKWKKENKADKGKQEKKGNDNNTDRVATTTSDDDLAIVYQENMINVAYDDTVWVLDSGACFHVTSRKEFFTSYT
PGDFGVLKMGNDGVSKVIGIGTICLETQNGTKLELKNVRHAPDIRLHLISTSKLDDDGYCSTFDDGQCKLSKGSLVVGRG
KKASGLYWLQASISTDLVNAVEGDSSSELWHKRLSHISEKGLDCLAKKNLLSGLKGARLDRCAHCLAGKQKRVSFKHHSS
SRKDDLLELVHSDVCGPLKDKSFGGALYFVTFIDDHSRRLWVRTLKSKDQVLGAFKEFQASAERETGKKLKCIRTDNGGE
YCGPFDAYCREQGIRHQKTPPKTPQLNGLAERMNRTLMERVRCVLSEAKLSNSFWGEALYTVAHVINLTPTVALGNDVPN
RFWYGRDVSYEHLRVFGCKCFVHVPKDERSKLDAKTRQCIFIGYGQDEFGYRCYDPVQKKVVRSRDVIFVEDQTIEDINK
VEKSKSQIGGLIDLDPSPTTHMPDAVEVQNHDVQNDNHNTDEIGAPEYEAVDVQQEAHVEELEVPLRRSTRDRTHSTRYS
PNEYILLTDEEEPECYEEAIESEQKVEWIAAMKDEMQSLADNHTFELVKLPKDRKALKNRWVYRVKQEENSKSPRYKARL
VVKGFGQKRGVDFEEIFSPVVKMSSIRVILGLAASLDLEVEQMDVKTAFLHGDLEEEIYMEQPEGFVVKGKENYVCKLRK
SLYGLKQAPRQWYKKFESVMVQQGYKKTTSDHCVFMQRFFDSDFIILLLYVDDMLIVGSSSSRIDSLKKELSKSFAMKDL
GPAKHILGMRITRDRKCKKLWLSQEKYIEKVLQRFNMARAKPVSTPLAMSFRLSVKQSPSSEQEKEDMQKIPYASAVGSL
MYAMVCTRPDIAHAVGTVSRFLSNLGKEHWNAVKWILRYLRGTTSLKLCFGIEKPILSGFTDSDLAGDTDSRKSTSGYLI
TFAGGAVAxQSRLQKCIALSTTEAEFIAATEACKELLWMKKFVNELGFTQKRYVLFCDSQSVIHLGKNPTFHGRSKHIDV
RYHWIRDVLDSKQLELEKIHTDDNGSDMCTKALPRVKFEACRVVAGLANPPHSREGEN
>DIRS-2_AMa_yr#LTR/DIRS 4102-5073 via tfasty with DIRS-1_CTe_yr and DIRS1_yr, 2 frameshifts. [Allomyces macrogynus]
GISGPVAEVAEQRLAESSRQSYDSAWCGWLRWCEAVNANPLCRSVDSLCAYLIAQWEAGGVSVDTLCGHHAALGSTWGPF
VDMSGVTVSVSTDDTVTQVLAGLRVMSGPAPPQRSGTFDVTIVDDHMRSWGDLALLDFRQLSWRLAYLLIRFGKRRFSCL
TQIAPLLCVVLPDRLHVTIAGPKEKLTECVVIYLPRTVDDHVMDVGAHFEAYLRESEGRRLDLAEDRLFVSTWPGDCRFV
VADTISTVIHKIMSGAGLSQQTYRASDLKSAVVSWMAANGVPKKDIIRDTWASLCTFPKYYLCPVTLMRLCHLLQTDAPA
NLGT
>Gypsy2_gag#LTR/Gypsy 858-1751 [Drosophila fruit fly genus]
MTSPFLFYRNTRRKCSDSDSDCDDHPIRCSVPRRTPSPPPSPRPADSVMDPDQLKFVIQAAVTAALAEQAAANKVLLDKV
NSMSQQLAAAHITPPEVQAYAPIEIRNDIRCDEPLDAVKCLPEFAGAHESYVSWRQAALAAYRIFRPYDGSSRHYQAVII
IRNKIRGAADVVLASFGTVLNFDAIISRLDFTYSDKRPVQVIEQELATLRQGKMSLLQYYDEVGKKLTLLTNKVNMSYEP
VLAKGLCEKFREDALRVFVSGLKRSLTDVLFSAKPRDLPSALALAHFSFYQTCQPSMG
>Gypsy2_AG_gag#LTR/Gypsy 846-1823 [Anopheles genus]
MLHSPPVRDVSTPDGVTPSADPAASGSKSPHVPTPPVPNTPRVPGPSACDAMFMPPESQIDTLNAMQLKPPEMDTTDIQT
FFFALENWFDAWNITTNQHIRRFNILRTRIPLRVLPELRPLLENIRQYATDRYEVAKRAIIEHFEESQRSRLHRLLAEMN
LGDRKPSQLLAEMRRAANGAMTDSMLVDLWIGRLPPYVQSAVIATNTDTNDRAKVADSVMDSFALYHRTGPYQTIHEVRN
EDFERLSRHVTELGQRLDAVLSKLNERERARPRSRTRQRQPNQDAVTPSGHCYYHTQYGQAARNCRAPCSFNNRRQGSNS
ATASD
>Gypsy2_SM_gag#LTR/Gypsy 247-1800 [Schmidtea mediterranea]
MNQNNFFVNKKKIPESVIRENIDFSSFQKLPLEPYEGDPIAFTDFMNDYFIYASAYGWSETIMIQRFPLYIKGSARDAWK
QINKNKIGNDWSKLNDAMKDKLVCKEIRRYFEQVFHERKQNPEESVLEFGYGLISLAKKAFSVNSVDDINIQNLIVDQFL
SGLSSNLKMVSSIVEYDDIFDLIRKISYIELKMADCNKVVKFNNLCSKQNIRKCSFQDKFKSEDLEINESNKNICNTLRS
FKSLNFEKKLLLNDDYDVYGQKSYSITNKCNLNYETIENELWLEDMAVEFQCNDSSLEIIDQIECTHYKMCCFEKIEVVY
SFNNYCVSNQLVLLKEKKIVFDDHSKFISMLSNFTTFNVHLSFVRSKVIRYESIVITENIINLNLLLPKCDIPLIPKPDE
VIIDSESLSEAIMIQNECKVLKKYFIKNNITSKTFNIIYIIIKLIWTHLKFYENKHTEEIIRYHFEYINSRMKDRICLPM
ICYINVIYLKCGNRIGSDGELNIKTYTSLVNRLMIEF
>Gypsy3_DR_pol#LTR/Gypsy 879-4299 via tfasty with SushiiDR1_pol, 1 frameshift. [Danio]
PHGERPPHEGAALSILRFICPFSFHLPSAFGKRPVPYRPGRTVTGVTCNNSPSSSGLFLPITLSWADQQSQFQAFVDSGA
AGNFLDLTLAKTLNIPSEPLPDPLTVTALDGRPLAPGEVTHLTSQLCLSIYQHQERICFHLIHSPDFPVILGHPWLLQHN
PYIDWPTSTVLGWSPTCQTTCLSQKSLQPSFESQEPLDLSRVPAQYHHLKAVFSKRRATVLPPHRPYDCAIDLLPGSCPP
RGGIFSLSLPERTAMDLYIEESLAAGIIRPSTSPAGAGFFFVGKKDGGLRPCIDYRGLNKITIRNRYPLPLMSTAFEMLQ
GASIFTKLDLRNAYHLVRIRQGDEWKTAFNTPTGHYEYLVMPFVLTNAPAVFQALINDVLRDMLNKFVFVYLDDILIFSN
SFQEHVQHVHKVLRHLLDNHLYIKPEKCQFHVSQVKFLVFVIEPEQIQMDPQKIQAVVDWPSPSSVKEVQRFLGFANFYR
KFILNFSTVAAPLFALTKGNMIRFRWGPEAEEAFKILKKQFTSAPVLLIPNADEPFTVEVDASEVGVGAVLSQRGEDKRL
HPCAFLSHRLTPTERNNHVGDRELLAVKLALEEWRHWLEGAKHPFQVLTDHKNLEYIQQAKRLNPRQAHWSLFFNRFHFT
LTYRPGSKNLKPDALSRVYVKSPQEDFIRPIVPSSKIVAPIRWELEGLIRKAQTKDPEPGGCPPNCLYVPRVVRSKVLMW
GHSSQLTCHPGSARTLEFLQRRFWWPTIKEDVMAFVKACPTCNQNKSSHQPPQGFLHPLSIPHRPWSHISMDFITGLPPS
QGNTTILVIVDRFSKAARFIPLSKLPTAKETAELVMNHVFRVFGIPQDIVSDRGPQFSSRFWQAFCQSLGTTTSLSSGFH
PESNGQTERLNQDLETTPRCMTANNPTTLSQFIMWAEYAHNSLCSSATGMSPFECQFGYSPPLFPEQEVEVAVPSALQFV
RRCRRTWKKARLKLLKVSQQYQHQANRRRRPAPNLRPGQRVWQDIPLRVDSRKLSQKFIGPFKIARKVNPVTYKLYFPKS
LKINPTFHVSLLKPVLSSPFFVTGKPSPPRFVGGQAVYTVRRILDTRKVRKTRQYLVDWEGYGPEERSWVLAKDILDPRL
IRDFHALKMKSLGKNVRSRS
>Gypsy3-SM_gag#LTR/Gypsy 9-1025 (no M; similarities to other gags starts from pos 18) [Schmidtea mediterranea]
ITERLLPKVFCQGDDLEKFIKRCEIYFDAKGITQKKDQERLTSCMIDEDLLEVYAKTLKKAEGFQARLRLAFDRERDVLK
DLQNLLNYKRKGEEIETYFKKVEDLVDRLFENKEFTKEKLTARMLIVCAENKEVEKEVILRKIKSTEEIKETLTLMDKVE
KQREQINSMKSYARVVYQEPQGRVQYKKKEQREESIRREMPECWLCHKIGHTKIDCPIKGKIECWTCHRSGHISRNCPDK
KAPRCFGCGKEGHIRRLCQEIRCERCSRNGHRSEECYTKMRYGQATERQRFTGNRYSRINGIEEEEERESCVETNEDNFR
KTYPNNRAPPVEELVGAIF
>Gypsy2-PTR#LTR/Gypsy 38-4606 [Populus trichocarpa]
MPPETRSQDVRRCDGSLEAANQRIDGIEIKLNTQSDDLGQLKAMMKEIATQQIAIKHTLQTLTGETSSSQRPHAPQPPTT
NCSQGWVGEGSQGSYRFHKPKRNFPTFEGEDVHKWLYKCNQYFDLEEIAEPDKLKLASYYLDGLALYWHQNFIRNLEGQD
TTWADYVEALCCRFGGQKDPLEELTEHKQAGNLEDYIKEFDMLWNRAQVSEKQALVFFLGGLETEIKNLVKMFEPKSLKQ
AYNLARLHDNTLTYRKNTPHYTKLPAQTNTYQHNQRPAYPTPSSSSTSNSTFTTFKSPQPALLPTPNRPPFNNATVNSNP
RPSRPIRTREMDERRAKGLCFWCDEKFVPGHRCKNRKLYSLCIIEDEEENSEEEETIETMNVEALTPHLSLHALQGTTGC
HTIKVWGKLDKCPIFILIDSGSTHNFLNANLASKQNCLLTPIKPMLVEAANGGTMSCTKLCKNLQWKMQGVQFQADVFVM
PLQSYDMVLGIQWLKLLGNVLANYEDKWMNFWWEGNEVTLKGDNPILTQSIRLEELNGLLARKTLLAEVNICSLRVLEVE
GTTLSYQEGYLPAQHAEEFPIQALLDTYSHIFREPVELPPARGHDHRIPLKDENLTVNLRPYRYSGLQKDTLEKLVAEML
DAGIVQPSHSPFASPVVLVKKKDHTWRFCVDFRALNKLTVKDKYPIPIIDELLEELEGATIFSKIDLRAGYHQIRMDPKD
VYKTAFRTHNGHFEFLVMPFGLSNAPTTFQSLMNDIFRQHLRKFILVFFDDILIYSKSQTDHLYHLTVVFELLCANQLVA
KKEKCVFDSNQMEYLGHIITKEGVATDPNKVVAMMNWPIPTNIKQLRGFLGLTGYYRKFVKGYGELCRPLTQLLKKGSFN
WTSSATMAFNQLKAAMANPPVLALPNFDKTFVVETDASGVGMGAVLMQAGHPLAFISKALGPRQLNLSAYERELLAIVYA
VTKWKHYLRGRRFLIRTDHSSLKFLLDHKATHEAQQVWLTKLLGFDYDIEYRKGKDNLAADALSRISSTELSALTLSSIS
TNIMEEIRQTWAADPNLQRVIKEVRKDANSHPAYAWVNNTLLRKGKVVVGRDSQLQTKLTSFYHDSAAGGHSGATVTAKR
LGQVFYWRKLQKLVRQYVRECSICQQNKTENVKLLGLLQPLPIPIAPFIDISMDFIEGLPKSEGKEVILVVVDRFSKYAH
LMALSHPYSAPTVAKVFMEHVYKLHGMPATIVSDRDSIFLSQFWKELFKHQGVNLHYSTAYHPQSDGQTEVVNKCIEGYL
RCMTGNAPTLWGKWLSACEWWYNTNYHTSTKKTPYEILYGMVPPIHIPYTHKDSPVEAVDHYLTQREEMFKEIRSNLLQS
QHRMTQQANKKRSERSFLVGDSVYVKLQPYRQHSVHKRVSHKLSAKYYGPYTVIKKIGTVAYELQLPATAAVHPVFHVSQ
LKKHVGHHVVHSDLPNPQHRSLLQPLQIIKRRMIKQSNTAVTQFLVVWKDIPLTEATWENADEFCFRFPEFHLEDKVVVM
EGA
>Gypsy1_Dmoj_pol#LTR/Gypsy 3844-7389 [Drosophila mojavensis]
MTATIDTGATRSFVSEDCARQRTIRGERCQVESRIRLADGSALDVTRMMKTDVSLAGKTAEANLLIMPTMLDHVILGMDF
LCAIGATVRCGNAELEMRMVDDVGEGASPPSERRGEKGSSGFREQGQLAKGHVKESGPEVSREAATSKEDPRSAITVSTV
GVQESSSQGAPPDKKRGERKQRKKSRDKRKRMEKGTPEERLRGSLPATRRDKKDRSEIMEDKRGAGPPARAVKQSEDLRS
GPEERSPEFKSVELEREGEPGGGPPTREESESEDEGNERSGHSSKEWPEELEEELQEFLEAELALFEDLRGVTHIAEHSI
RMKDDKPLKQRYYPKNPAMQKVIDEQVDELLQAGAIEPSKSPHSAPIVLVKKKTGDWRMCVDYRQLNAHSVPDAYPVPRI
LHILEKLRHARFISTLDLKSGYWQIPMAADSREYTAFTVPGRGLFQWRVMPFGLHSAGATFQRALDTVIGPDMEPHAFAY
LDDIVVIGATKEQHVANLKEVFRRLRAANLRLNRKKCSFFREKLAYLGHVISGEGICTDPAKVEAIRSLPSPSCLKELRQ
CLGMASWYRRFVPDFASLVQPMTKLLKKGQKWIWSEEQEEALQKLKESLTTAPILACPDFSAKFVLQTDASDYGLGAVLT
QEVEGQERVIAYASRKLLKAELNYSATEKECLAIVWAIRKMRCYLEGYRFDVVTDHLALKWLNSIESPTGRIARWALELQ
QFQFDVRYRRGKLNVVADALSRQPIDSCKQAVEENPPCGWIKRMRERIVKEPEKFQDYVEENGQLYRNLGHRIDEEDFIP
WKLCVPSSLRGRVMRECHDAPTAGHQGVRKTAARLAQRYYWPGMFRDAAKYVRCCETCQRFKCVQQKPAGHMLTRQVAEP
MAVLCADFVGPLPRSKRGNTMLLVFHDAFAKWVELVPLRRATTALLQLAFRERILSRFGVPRTFVCDNGVQFASRSFKAF
MESLGVTLQYTAPYSPQENPTERTNRTVKTMIAQYIEGHQSSWDELLPEITLAVNSSVADSTGFTPAFLMLGREPRLPAA
LYDEVTPGSATRETQPEAKGVKMKEIFDIVRSNLQRASKDQGRHYNLRRRDWRPALGSAVLLRQHQLSNAAEGFAAKLAP
KFDGPYKVVKFLSPNVVRLTKEGERKRRVANIAQLKPFHQEDEESDTIPETETGETGNRPIR
>Gypsy1_DM_gag#LTR/Gypsy 650-2014 Gypsy3_gag (648-1993) broken and 91% similar. [Drosophila melanogaster]
MSESFRQYRNSKKCASDSESESDDSTENSVRKNTPTNAFTAYKMSLETEQIKALIRALQEQALESQRREADLRKTIQDLA
GQVAAIQIAPARAEAPPIKVYRPVEITGLVPCGETLDAVKCLPDFMGTQETYVSWRQAANAAYHMFRKYEDSSRHYQAVV
IIRSKVKGPADAVLSSFGTILNFDAIISRLDFTYSDKRPIHVIEQELGTLRQGSLTLLQYYDEVEKKLTLLTNKATMSYE
ASAATVLCEKFRDDALRVFVSGLRRNLTDVLFAAKPKDMPSALALAQEVESNHERYTFATSFARSQEDRDHKQYPKVQER
QRAPPQAGSQGSAGKNPHFTKQHRAQVHSAPRSDRMARENTPEPMDVDPSLSRMQPSHAPAYPKSKPAASGRSVPPKRQR
VNHVAQASDDSDKVYNTAASSAAVKVDDDSILEYDSDTINFLGESPCYPSSDEE
>Gypsy1_GA#LTR/Gypsy 20-4383 [Gasterosteus aculeatus]
MDSADSGSGLTVLPTPLLQQTEEQFNAVHLGMQGMSERQESLHSQVTFLTSQVQRLMDRLDTFATPITVPAPASLPAASP
PVVPPRLARPERFSGDSGDCRPFLVQCGLHFELNAPSFQTERSKVAYVISHLSGRAERWATAEWSRNSRICSSVQLFTET
LSKIFNTTNPGREAARALMGFRQGNRRVSDYAIEFRTLAADSGWNEESLFDAFLYGLAEPIKDLLINRELPEDVDSLIAL
VVKIDKRLQDRGRSRPEYSAPVQRGQSTSAQQSSDGAEEPMQLGRTKLSPEERQRRVREGRCLYCGQRGHYLSNCPVRDQ
AAARYTLVSHTTVSSVRPSMQAKLITPSQTVTYPFLVDSGADENFMDWRLAKRLNLKLIPLPKQLEAHALDGRLLCKITH
RTDPIQMIISERHSEALSFYLFDSPSHPLILGFPWLSKHNPHMNWVTGEITSWDKDCSVTCIHAVSISKISHSSDVSSTK
CLELPVSRSAVVSPRTASSDADFPDLSRVPPCYLDLKEVFNKTRAISLPPHRPYDCAIDLLPGTSPPRGRLYSLSSPEVK
TMTEYIDSSLAAGLIRPSSSPAGAGFFFVSKKDKTLRPCIDYRGLNEITIKNRYPLPLISSAFELLRNAKIFTKLDLRNA
YHLVRIREGDEWKTAFNTPSGHYEYLVMPFGLSNAPAVFQALVNDVLRDMLNQYVFVYLDDILIFSPDEDTHVKHVHQVL
QRLLTHQLFVKAEKCEFHVSSVAFLGFIVSQDNIQMDPAKVSAVTEWATPASRKHLQRFLGFANFYRRFIRNFSTIASPL
HKLTSSNIKFQWSLPAERAFQELKERFTTAPILTLPDPNLQFVVEVDASDVGVGAILSQRSEVDRKLHPCAFLSRKLSPA
ERNYDVGNRELLAIKVALEEWRHWLEGAEQPFLVLTDHKNLEYIRSAKRLNSRQARWALFFNRFNFSLSYRPGSKNTKAD
ALSRLFDPGSAPRSPSTILPPSCVVGAVTWAIEQRVRQANVNGQVPDGCPPNRLFVSIPLRPQVIHWAHTSRVSCHPGIR
RTLFVVKQRFWWPSMEREVREYVTACPVCARNKSSRRPPSGLLQPLPVPHRPWSDISLDFVTGLPPSKGNTTVLTVVDRF
SKMVHFIPLPKLPSAKGTADAVLLHVFRIHGFPKDVVSDRGPQFVSQFWKAFCSLLGATVSLSSGYHPQSNGQAERMNQE
LETGLRCLVSQNPTTWSNHLIWVEYAHNTLPSASTGLSPFQCAYGYQPPLFPDLEREVNVPSAQRFVHRCRRIWKGVREV
LLRSSVRTKGAADRRRTLAPTYRTGNRVWLSTRDIPLRVESRKLAPRFIGPFPISRVINPAAVRLQLPSSMRVHPTFHVS
RIKPALESPLVPPTKPPPPPRIVDGGPVYTVKRLLAVRRRGRGRQYLVDWKGYGPEERKWVSTKNIVDPNLILDFHRLHP
DRPETSSAVPRRGG
>Gypsy2-NVi#LTR/Gypsy 364-4855 via tfasty with Gypsy35_AG, 3 frameshifts and 3 stopcodons. Trimmed 70 AA to first M. [Nasonia vitripennis]
MAMQSRIVENLPLNGGQDQAQIFSASNAHHIIRDFFENEGPEKSKAWINELENTKTLYNWGDALCVSIAKSKLKKGAWKW
LLTKSSTVKTLGVFKEAFTGAFTYKRSRSEKLKVMAARSQNRNETLQHYFLDKIWLCEGLDLEVSKIRDEIAAGLWSRDL
AHYALEHEYESTDEILQDLVRVEKIHSNRRERLGEHRDRHNASGEAKQSGRGDHGSSSETSSRASERGAATTNSGAHSEK
DKRAFNSGKCFNCSESGHLAQNCSKPKQVFTCFLCKRPGHVASRCMNNATQLEEKSTTNTPSHIALVDSSDSDASGKSLR
AKLVLIIRNLLFIDMGASVCTIKSIIVLREGYKMLNAPSILRGFGGNTVESPGVVVGMVRLDDLKPRDVTFRVVPDTAQK
YDVILGRPFTEAQDISYSKVGGNLVFSDVDLGETRRSTKTNAHAFECVDLKPGTINFINVEIDSYKVPVGVINTSNECRS
VDALDTVGESLFGIEVAKELTPRYAPITLExIVVDKHITEEQKGVLLVLLNKYQRCFAKELSEIGRTDKLTMDIEVESNE
IVPSQPYKLSSRDRDDLDTLVTDFKRAGIITETDSPHASPAFVVRKKDGSPRMVVHYGKVNKLSRKRNFPIPNFDDFLEK
FHKARIFITGDLYMGYLQMPITERAKPLTAFIIETQTGQFETAMLGLSWAPIYFAKLMELVLGKARKLGIALNFFDDIFV
YAENWDDLLKNFEIVLQLLKDAGLTLNIEKCRFGMRRVEFLGYMLGEGELRPGERKIAAIDQFPRPTDKHAIRRFLGLAE
FFRRFVPNFARRKKPLSNLLRNDVVFVWAQAQEESFQNIKSALVKKPVLKLYKPNAAKTELHTNASAAGLGAMLLQADAE
HEPLRLVYAISRCTNTVEAKYHSSKLELMAISWALARSRPLLIGLKFVVVTDCQSLVYLNAWKTKNAQISRWMSEIAEYD
LEVKHRRGENMQHVDALSRAPLAESQSDCFDVMTMTVDSDESEILVFQRSDSTILELINILKKREFERDKLEKQQVESFV
LKDVLLYKRIVRDNQERELYVVPAAMRKALVIRYHDLGSHFGIEKTAKRIEEYYYFPRLRRYVRMHIRNCLECIMAKNKS
GTGQGELHPIAPGRRPFDVVHVGPFPSTPRNNKYVFGLIDNLTKFVFIVPVKNVTAVTTVKHLTDFVNLYGAPGRIVSDR
GTSFTSHVFQEFCVKQGIKHTLNSSRHPQANGLINxERLIRHSFQQxEWIMTVKEPNDWDRNISKIARDINCTVSAATGV
EPYKALLGYLPRFNDGNLRLLTENCETYTTPSELQERLRERILLEQAEYKARYDKNRNLKTAFKIGDIVYMKQNTVATGR
PPKLQKPFGKRPLVVVGVGPSDTYRVKRLNESQDRGFVTTANVSQLKIWTSFEKDSVDKFEDDRDGEQSISDVPDETDVN
IDSNIPSCSTNVIKISGNQEEKLSSDQQNENTSAKSLPLEKASRQRRKPKRFDDYVM
>Gypsy1_TP#LTR/Gypsy 1052-4546 [Thalassiosira]
GFQRQSEILYSGTQKPDSEVESKLKLKSNCTDDAKLEYGIHTSSSSILDDNTIEVFDMEEERTEYDGMPIPKIATTVDPN
RYTPVTILMCDTIATLQSRKMFKVLFDSGSTRTLIKRDCLPTNAKAKALRESKTFKTLAGELKTTEVVTMRDIKLPEFSR
NRTIDSQKALVFNSPCRYDVILGADFLTKSGINLNYAKSELQWYGVSVPMKDPLALTDEDYQAMIDVHLTEEDDEVHDDW
FDAYVVAPIKDAKYEAVDVDDVVKQQTHLTDEQRNDLNQLLKKYTRLFSGKLGLYPHRKVHIDLIEGAEAKHCKPYPVPH
IHYETFKKELEHLVRLGVLIKQGTSEWASPSFIIPKKDGTVRWVSDQRQLNKVIKRKVYPLPVITDILKRRTGYAFFTKL
DLSMQYFTFELDEESADLCTIITPFGKYKYNRLPMGLKCSPDIAQEAMENVLHGIDDTEVYLDDIGVFSKTWQDHLKVLE
KVLNALEVNGFTVNPLKCEWAVKETDWLGYWLTPTGLKPWKKKIDGILKMQPPKNLKELRGFIGAVNYYRDMWPKRAQTL
KPLTDKSGAKKFEWTQEMNKAYEAMRSMIVAETLLTYPNHNKPFDIYTDASDYQMGACIMQEGKPVAHWSRKLTGAQRNY
TTMEKELLSIVEVLREFRGMLLGAELRVHTDHKNLTYHKLNTQRVLRWRCFIEEYSPKLIYIKGEKNVIADTYSRLERND
TIDVSKTPPQINDEIDEMSYLYEDSELLECYLEIPECYLIMPEMTEGAPGQSPLVYQWIREHQEACQELQQMKTKFPNQY
REKQFPDNVRLIVHVKHGDNPDTQWKIALSRSMLQPTIKWYHEMLGHPGSKRLCLSLQARYYHPQLRSFVDKYTCEACKK
YKLDGRGYGLLNERDINIAPWDEVAIDLIGPWTIEINNQKYEFNDLTCIDPVSNLVELIRIDKKTAKHVRRKFEQAWLAR
YPLPKRCIHDNGGEFTGYEFQTLLSRLNIKDVPTTSRNPQSNAICERMHQTVGNILRTLLHTTPPTDVDNATELIDEALS
TAMHAMRTTVATALGSSPGALVFARDMFLDIPLIAEWQTIASRREQIVNESLRRQNAKRRSYDYVVGQNVYKKVVDPSKL
GRRVDGPYTVRQVHTNGNITIELRQGVTERINIRRVIPADEEPQ
>Gypsy4_AG#LTR/Gypsy 119-4390 [Anopheles genus]
MLRKKELRRALIVDVPDTATVTQLRQLYASHEPVARSPRAAPPTTSATTPAPACANHQDAAILCLPHYNGDDDFAHHENV
ANAAASTNNTTDAVSALPSAHGVAAALPRGPDDIEAQFEKLRQQQQLAELRQKVHQLETQQPAALCVKDFEAFIEPLDAD
KNPNVIRWFRDLERLFALYRVRDADKFFFTLRLLTGTAANVAKELVVTTYDELKKELIDNLHVVATPESVYRQLRNRRLR
PQESALHYLFDMQRIAGQASIADSELIPIVIDGLGSPSITSSLHFMPLTMDDFRKKLKLFESCRHLCTTQPPSADARATT
NSRMERPRPSQEPIRCFNCSRFGHLQNACPRPKRPPGGCFRCFQTGHVYRNCPERRANATVEGNTSSDEALATNQEVSLT
FFHPSAKRTTLPCVRSLLDTGSPVSFISDTIVPVKMLGPLSATEYCTMIKGPLYSRGKIDCTIRFKNHSVRHSFIILPGI
AWPVIIGRDLLNSLNIFLTYSSLTTSCITKPLSTELKEVDTILPEKLDDAIRSICALDVAEADNELDLGKTLSLEQRSIV
NSIVENSYLNYTSDVIPLKHPMKINLTHDTPIFTKPRRLSYGERQQVKQIVDKLLAENIIRPSNSPYASALVLVRKKSGE
VRMCVDYRPLNKITVRDNYPLPLIETCLEHLCGKKFFSLLDLKSGFHQVPMSEESIPYTSFVTPDGQFEYLKMPFGLRNA
PSEFQRFINSILREFIDDGRIVVYLDDIIIASTDLSSHFSTLRSVLEKIKQNNLELRLDKCKFVHEEIEYLGYKANFSGI
QPSDRHIKALTNYPMPTNLKQLRRCLGLFSYFRRFVPSFSCIAKPMTNFFRRTKYLTSIQIACMLLKPYVTNLCILLSFP
YSTQNGKPNYTVTQVPLVLALFSFRNRMTISCTLLLTFPKPLQKTSPSYTVMSLKLFPSFTLLSASTLMFMGSPLVTDCN
SLVETLKNRNASAKIARWSLFLENYDYTICHRSGTSMPHVDALSRTEAVGAIGEIDLDFQLQVAQTRDPSIEALKHRLES
EEVDGFLLQDGLVYRDIPDGQPQLYVPSEMVDNVIRHTHERIGHLGINKTFSKISQHYWFPHMKPTIDKFIKNCLKCIVY
SAPHHTNARNMYSIPKEPLPFDTIHIDHLGPLPSSSLRKKYILVVIDAFTKLTKLYPTSSTNAKEVCSALSQYMSYYSRP
RRIVSDRATCFTSTLFEDFLESHNISHVLNATGSPQANGQVERVNRVLRPILSKLSDAPDQTDWVSKLRSAEYALNNTVH
TSTNFCPSVLLFGVEQRGKVPDELAEYLDEKFDRASRDLEAIRAKALENIEESQRKNEEYFSKKHKPPQCYKEGDLVAIR
YSDTTDSGNKKLNPKFRGPYVIHKVLPHDRYVVRDVEGCQLTQLPYDGVLEANKLRRWTESSD
>Gypsy6_VC_gag#LTR/Gypsy 78-776 [Volvox carteri]
MNYPSEEATSADSEDFGPLATFAADLGNAVMAAAASAGPLVVAGSAIPTSATIPRLRELVHLSRGALQAIEAVHRCAEEV
LLFASSAHGAGGAERAPTAAAFLPEQDVEAPELDPVGAPAEAPAPDPRAAVAVGGPERREGGTVAAPGAGKPRGGPREQR
RWQQKGPRSNQGPSEAGPSQPMGQKRKRDDDQWLEKYCCTKAELEERRKRNKCMSCGDGHSTGVCPLWPKKK
>Gypsy6_Dya_pol#LTR/Gypsy 2177-5402 via tfasty with Gypsy12_pol, 1 frameshift. [Drosophila yakuba]
MSKLPSKAIGKPTYGSIQQEPNAPENLNPKATLHKPTMANCIPMRLRPYEERVKNYAEVRKRLFQDIKPHRNRRTLRLKS
FYAEVRRNKQLQISTIFNKSSDLRSYAEVSCMGFTELGLLDTGANISCLGEELAQQDFSSHPQFKPIKSRAKTASGENQT
IIGFLDIELTYNKVRKPLRLYIIPSIKQRLILGHDFWRTFQIAPNIISSVHVPIEDNKLAGENMYPLTSSESQRLAVVKQ
LFPKASERLGRTSLIEHCIDVGNAKPVKQRFYPVSPAVEKLLYAEIDRMLRLDVIEPSVSPWSSPMRLVVKPNKIRLCLD
ARRLNDATKKDAYPLPSIDGIFSRLPKANIISKLDLKDAYWQIQLSAESKPLTAFTVPGRPLHQFKVMPFGLCNAPSTMC
RLMDQIIPADLRYCVLGYLDDLCVVSEDFESHSLVLIRLAEEFRKANLTLNMDKSQFGVTSINYLGYVIGSGGICTDPAK
ISCIVNWPAPKNLKQVRGFLGVCGWYRRFIPNFADLTCPITDVLSKKLKFAWPPEAIAMDRLKIILTSAPVLTNPDFEKK
FYLHSDASDFGIGAVLVQLAEDKAEKPIAYMSKKLSRSQRNYSVTERECLAVVLAIEKFRCYLELQDFEVVTDHSSLLWL
MRQQNVTGRLARWIFRLQQFKFSFSHRKGKDHVVPDALSRLFENEINALDMAPIIDLSSEAFNEDTYTTLKTKFTNSEEK
FPDIKIVDKFLYIRTEHADRNEFQDKQSWKLWVPETLRPKVLRQAHDSLTSSHAGMQKTIARLRRNLFWPGLAKDVRDYI
RSCDACKENKAPNYTLRPPMGEHCPSYRPFQRLYIDLHGPYPRSKQGHVGLLIVLDHFSKYPWLQPLKRFTSTAIIDFLL
KQVFHSVGVPETIVSDNGVQFKAVEFNAFLTELGVNHVYTALYSPQSNAAERVNRSLLAAIRTYLKTDQTEWDRNITSIS
CSLRSALHQSLGCSPYRALYGLDMITHGSDYKLLKNLSLLEEPITPISRSDNLAIIRKDIQANIRRAYDRNVRQYNLRAK
PISFKEGQEVFRRNFAQSKFAQNFNSKLGPQFVKS
>Gypsy6_VC_pol#LTR/Gypsy 843-4856 [Volvox carteri]
MRASRALLPSVLAQVERAIGRKLTFDARSAKSDGDALCNPLVPRSQSLSANDLRGHTVLFLPSSISELQAQLTAYHICKR
QHLETAACIITPTHTTHCASALLAGMQRVLQFSPRTPLFNGLDLEGRPVPFPGSMSAFDVWYDPPRPAVALRDTSPRLST
FLLSPQSAALPGAKVPLIQVRVVSDTLLALADSGASDDFISLSEVKRLGLTPSACSWSHVTLANGDKQAILGRVTLRLSV
GPLRLSVQPYVLPELPAPATYILGSSTFSRYGGVLSFESCTLRLRKGTLVYKAPFIAVERDPSEQGTSQSEPQVHYAVAA
LCQHTTPQPIGRKAAVRLIRKGAHGLLVRPKLQLNAAVTATDPSDPELQSLLNEFSDVFQEIPGIPPVRPVDHTIPLTPG
ATPVTRPMYRLSPLELDEVKRQVTDLLKKGMIRPSTSPYSAPILFVGKKDGSLRMCIDYRGLNATTVKNRYPLPRIDDLL
DKLRGSAFYSSIDLQQGYNQIRISESDIPKTAFRTPFGHFEYTVISFGLTNAPATFQAVMDRIFRPYLDKFLIVYLDDIL
VFSKTREEHLQHLRSVLQVLRQEKFYAKLSKCHWAQPQVEYLGHIVSADGVRMDPRKTATVRDWPAPTSLQELRKFLGLT
NYFRKFIARYSVIAAPLTNLTRKGAFSSPAAWTADCQQAFDALKRAVADDLILRFPDYSLPFRVEVVTDASLYGSGAVLL
QQGRPVAFTSRKFSGAETRYTTGEQELLAVLHALKEWRCYLEGRPFTLKTDHKPLTFLQGVPSLNRRQARWMEYFARFNF
DWEYLSGSLNVADALSRHPSLHSAILSVTTRRTASLERSVSASDLSARIKTAITTDPWFTDTNNTGHLLFQDGLWLRREG
SYRQIVVPNDDSLRRELLSRFHDGPLAGHPGCTRMVEILRRSFWWPRMAKDAENYVLSCDSCQRNKSISGKPHGLLQPLP
VPAAPWESVSMDFVVALPKTEGGYDAVLVLVDRLTKMVHLAPTTSACTAEHTARLFFDNVVRLHGVPKSVVSDRGSQFTS
KFWDALGKLVGMRINLSTAYHPQSDGQTERTNRTLGDMLRNFAGRTPSVWDTCLTAAEFAINNAVNRSTGQSPFFLNYGY
NPVLPVLRELDVNVPAAKTFAKSFVSRLTEAKACLDSAQQRAADYYNKSKRDVTFTKGQLVMLSTKNLRSLAEGSRKLLP
RWVGPYPVVRMVGSVAVQLELPPEMRVHPTFHVSLVRPYRGSVPIPEAPAPPAAIEAAPTTWLSGRQTMYAVERILDYRT
RRVGKARRKRTVHEYLVKWAGYSSEHNSWEPARNFTPDLKPLLDAARLRAQSQVVSR
>Gypsy9_gag#LTR/Gypsy 639-1671 via tfasty with Gypsy4_gag, 1 stopcodon. Large deletions. [Drosophila fruit fly genus]
NSAQQETSQQHKLRRLSEYGRKYEYGRKAVKAALEHQSTVFEQKLSDTTHYMLRQIDTISIKSETPKVVVYEAAKVIPGI
TCDEPLDIVKSIPEFDGKQENYVSWRQAATVAYELFRPYNGSSKHYQAVSIIRNKVRGTANSALSSFSTVLNFDAIIARL
DFTYADKTPLRVIQQELATLRQGYMPLLKYYDEIEKKLALLTNNGPNNQSQGQKAGSFKQRHAPPNNQGVEPMEVDSxTR
YSQQTQYRRNNDQSMRSRQMLHHTPWNHRGSEYDLLAQSEVLATDDDDASDGEQCNFLGETPCYRTLQEQ
>Gypsy7_AG_gag#LTR/Gypsy 507-1811 [Anopheles genus]
MEALAGRIAALEARFSESNVTDDFQDPPLFFTKQDGSAVDPESFEKIPGVVKDLPIFCGDPSELNSWINDVDGIIRLYQT
ISSHSLEKQNKFHMICKFIRRKIRGEANDALVASNVGINWNMMRKTLITYYGEKRDLETLDFQLMSVYQKGRTLEVYYDE
VNRLLSLIANQIQTDDRFNHPEASKAMIGTYNKKAIDAFIRGLDGDVYKFIRNYEPTSLAAAYSYCISFQNLECRKMLTK
PKHFNTPPSAPRNQIPLPTPHLPPRVFQHQQRPMTANNVRPHFAHHPPIQNFAGNFTQRPVWNQPNQQRPIFQRTNFNQP
NQMKNFTQQRNNFRQNGPEPMEIDPSIRSHQVNYANRPNSSNIRPLKRQRAFNIEAVPRRELEPTSYEDNLYDDDVESQA
SYERYMRNVEKQEKLNENSHYDEISREAELNFLG
>Gypsy6-NVi#LTR/Gypsy 138-4974 via tfasty with Gypsy37_AG, 1 frameshift.  [Nasonia vitripennis]
MSDIDDFEKFVEDKQLHDIISGNMADKQLQEALAEIERQKARRLEERLEADKKLKELQAALQQQRNQQDSQNSNNPSDTS
TDSLASAITSLSDVMKSQSETLSSFQGILKNITQVDQGQVMSAASAQSIIREFYGNEGPEKAQVWLNELKNTKTLYNWSD
AIVLSVAKSRLKKGAWKWLMTRSTTVITFEAFLEAFSAVFTYKRSRSEKLKVMMARTQSRNEPIQDYFLDKVWLCEGLEF
TVNDIRDEVAAGLWSRELSQHILGKSYLTSDEILRDLFRIEKIQNGRVQRINEQREQRTTTQDSKYGGGTNNSTKSWRAD
RTSNGVGGGVSASGSFTSTARDGATDKTQGNSKETRDAAVKCYNCNQIGHISRECTKPKREITCYLCKRPGHIATRCTFK
PNNSTDTSKLESVNLVNSVNTSNLGNKFIREVKIGSLKTTALIDMGATVCTIKSTAVLCAGYKVNRVRSVLEGFGGQKVE
SPGVVVESIQIDDLKPRELTFRIVSDTAQKEDVIIGQPFTEALDISYTRSGNKLKFFDTNIIETNDTSSVKIYSLDNVEL
ESGEVKFINVNVSSHELVIPVINNTDKVNRINVNEKVGESILSIEPVNEMEPRKELVKSDEIVTDENVTFEQKNELLQIL
NSNRTCIAKNLSEIGKTNLMTMVLDDMDIEFEDDRVISSKPYKLNATDKRDLDNLVIEYKKAGIITETDSKHASPAFVVR
KKDGSASMVIDYRKANRITKGVHFPIPNFDDLLEKLSNARIFITVDLYRGYLQMPLTERAKPLTAFITETTTGQFERAML
GLKCAPMYFAKLMEKVLGDARRHGIAFNFFDDIFIYAENWDQLMKNFKIVLQNLKDAGLTLNLKKYRFGMRKVEFLGYVL
GDGELKPGDRKIVAIEQFPRPSDKHEVRRFVGLASFFRRFVPKFADKIKPLLLLLRKDAKFEWNREQEMSFINVKSILVS
KPVLKLYNQNAYRTELHTDASSVGIAGMLLQSDNEGEPLSLVYAVSRCTTEVESKYHSSRLELMAIAWSLQRLRNFIIAL
KFTVVTDCQSLVYLNAWKTKNAQISRWMSELSEYNLEIKHRRGELMQHVDALSRAPILIDPIINSINTITEVRTNDYEIL
VFQRSDPFILEIISILRKSEGERSKLEKSKMKDFILRGGLLYKKVIRNDKEIKLFVVPNAMRKSLVIRYHDLCNHFGVDK
TVKRIEEYYYFPRLRRYVKIHIKNCLECIMSKRKAGPGEGELHPIPPGKRPFELIHIDHVGPFPTTSRGNIYILGIIDNL
TKYVKFEPVKNVTTQVTVKKMEEFVNRFGAPDRIVSDRGTCFTSHLFQEFCLRHGIKHSLNSSRHPQANGLIERMNQTLI
PALRISEHNNLNYNWDRDVAIVERNINSTISTATGIEPYRALLGYLPRFNDGNLRDLTKHCETYTPPNEIQCKLRDRIIA
EQAKYKNYYDKNRYKNVKYNIGDIVFMKRNAIASGESTKLQNPYGEPLVITEVYPNDIYRVKKLNDYGDRGYETTANVSQ
LKIWKNSESIHSDDLCDDGENSDHDIEYNNDCNDNNLDLENNIIDTPDNVDNQTENVNKNTLDNSIVGKNFELVERPKRV
RKTPTYLRDYIV
>Gypsy4_Dpse_gag#LTR/Gypsy 794-2323 (gag & pol in one reading frame; artificial break) [Drosophila pseudoobscura]
MPVKRSPEKLINLKDIERPTTSNQRAPSISHSLTTRSKTKPVETATMPDPPPDQENLDASTPTTSNRAASDVLYTVMAGT
ISAEMAKQTLAMSAAMAQLTEKLSQAISTGLQAASTASSRERSPIRIEQLSSGTHVEQHNIQPLLPNSHSQAASDQTRDY
GQIFSQAPLPGEVRPDRISQIMANWKLRFNGKDSMSIDDFIYRIEALTHQTMNGNFELVARNSNNLFEGKASEWYWRYHK
SVSQIRWHDLCVALRGQFKDSRTDRIIRTEIEDRKQLVNESFDDFYSVIASLADRLTQPMSEQSLLETLRANLLTEVQRE
ILYEPASTIAQLRHLVRTREIFMRTVYKPSVAIPKPKYRNISALGHQTDHISESDSSDIEEVEVAAIEASCWNCGAKGHR
YQECLAERRVFCFGCGLADTYKPNCRRCSSNSTKKLSSACTTEKCTQTSCLEGDEYRLDETPKLLHNLLPAASYHPDLQQ
SINYSTPGKSSTRSRLRRIAFNRQTRAERK
>Gypsy4_Dmoj_pol#LTR/Gypsy 1329-4449 via tfasty with OSVALDO_pol, 3 frameshifts and 1 stopcodon. [Drosophila mojavensis]
RSRIRLADGSSLDVTRTMKVVVALAEKVVQMTVLIMPTMLDHIILGMDFLCAVGATLRCGDTELTMRMEETSKESSRVEN
EGSLARRSSYANVNPEAPSWTPPSKKRRARADAESQRAPDICARADRKGDEQLERKLGEHPTMRDATDPEEERDARPALG
AVVWPEDLDPSLKEFLETELALFEKLEGVSHIDKPLKQRYYPKNPAMQKIINEQVDELFRVGAIEPSRSPHSAHIVLVKK
KTGEWRMCVDYWQLNAHSIPDAYPVPRINHILKRLRQARFISTLDLKSGYWQIPMAADSREYTAFTVPGRGLFQWRVMPF
GLHSAGATFQRAPDTVIGPEMEPHAFAYLDDIVVIGASKEEHTANLREVFRRLRAANLKVNRKKCSFFREKLAYLGHVIS
GEGICTDPAKVEAIRDFPTPKNLKELRQCLGMASWYRRFVPNFASLVQRMTRLLKKGQKWVWTEEQEDALQKLKGSLTTA
PVLACPDFSEKFVLQTDASDCELGAVLTQEIEGQERVIAYASRRLTKTEVNYSAIVWAIRKMRCYLEGYRFDVITDHLAL
KWLNSIESPTGRIARWALELQQFQLDVRYCRGSLNVVADALSRQPLENCQQAVEECLPCKWIAKMRESIANDPEKFRDYV
EENGQIYRNLGYRTDDEDYIPWKLCVSEGQRSRVLHECHDAPTAGHQGVRKTAARLAQRYYWPGMFRNAAKYVKRCETCQ
KFKCVQQKPAGQKLTRQVAEPMAVLCADFVGPLPRSKRGNTMLLVFHDAFAKWVELVPLKKATTALLQLAFRERILSRFG
VPRTFVCDNQFTSRSFKAFIESLGVTLQYTAPYSPQENPTETTNRTVKTMVAQYVEGHQSSWDELLPEITLAVNSSVADS
TGFTPAFLMLGREPRLPAALYEEVTPGSATREIQPKAKEVRMREIFDVVRNNLQRASKDQGRIIICVGANGGRSQVRQSC
xGSTRCPTRRMASQRNWHRSTDGPFRIVSFVSPNIVRLTKRGEHKRRVASISQLKPFHHDGDESEKERDESRGTIDVSEH
>Gypsy5_CB#LTR/Gypsy 37-4138.wised with Gypsy6_CB 22-4128  [Caenorhabditis briggsae]
MADLTQQLASLITAFGQFVQNPASSPTSVPSNVSTRTSQLVESISTRIPNFSYDPDEEKTFDGWWNRYEDIITKDGSSLT
EDAKVRFVLSKLDSKEYYHFSNRVLPATPNSLKFTDLISKLSDTFKSTSSIFRKRQEFLRMEYDGSSIEEYTVLVLRRFT
SSEFKKMTDDQTCCMVWINGLRDSSYIDIRTKALQIMESKPTTTLLELEKEIKRLLDIREDSKSVCRVQQPAEVNAINRK
SSTDKSQKSQKPPPSPCFKCSGNHWARECQKKVTCLNCQKSGHIAKFCRTKVKGNECPKGKIKSVIIGSATNSQVNRIYR
TVIINGKKLKMQMDTGADITMISIKDWKLLGRPELQSPTIQVKSANHQPIAVKGFFKCHFKLNGTSASGMAHVAETGTLL
GTDWISKDPHFWRMLNANQVSKVSSDVGSACDYLDNMREGLKAELNKQFSDVFKPELGRCTKTKASLVLKPNAQPVFRKA
RPVPFAAVSTVSEEIERLQKAGVISPVDHSDWAAPIVLVKKKNGSLRMCADFSTGLNDAIQLHQHPLPTADDIFATLNGG
KYFSQIDLAEAYFQLKLDEQAKSMLCINTHKGLFRYNRLAFGVKSAPGSFQQVMDSMITGLDGTAAYLDDIIISGSTIEE
HNKRLMALMKRINDYGFRIRLEKCTFLMERITFLGFVIDANGRRPDPEKIAAIDQMPPPTNDSQVRSFLGFIQFYGXFVS
ELFKLRPPLDALTKKDVKFQWTPQCQFSFDRVKQILRSDLLLTHYDPNLPIIVSADASQYGIGAVISHRFPDGSEKAIYH
ISKALTAPQRNYSQIEKEAFGLITAVTKFHKFIYGRHFTLKTDHKPLLSIFGDKKGIPLYSANRLQRWAIILLNYDFSIE
YVNTHDFGQADALSRLISEQIQQTECEDRVIAQVESEVLTNLVTTCDQLPVTAKMIRASSKKDPLLNQVYQYTISGSWPK
ISDKTSQLSLFHNRRDQLSIVSECLMFNGRIVIPHALRSRVLKMIHRAHPGIVRMKQLARSLVYWPAIDKDIEKMVRSCD
ECASVSKNPXKNTLCSWPIPTAPWQRVHCDYAGPVNGRYYLVIVDAFSKWPEVIPTTSITSTATINILRRIFAQFGDPET
LVTDNGTQFTSSQFQSFCKDRGISHLRSPPFHPQSNGQAERFVDTLKRGLGKLKGEENTDTALYVFLQNYRSTPCSSSPD
GSTPAENFIGRKIRTFLDQLLPNDQLLVSHDTEMEKQFNKQHGARRRSFIADEKVYVKNFSSINTTTWIPGIIQRHIGRT
LYRVLVKDTVWIRHANQLRRRDNPIYIDVPLNLMDQIDVTPTPAPALTSSTAPPSPVPTPPTPMPRKSTRITRQPQRLVV
QPSQKSYN
>Gypsy5_gag#LTR/Gypsy 278-1435 [Drosophila fruit fly genus]
MSKLAKVKKLIPATRSSTRLSASLSDVREDQVALPPRIRPSSSSAPSTMTSSSETSNFSSPPPPISPQDICLSLKIPDGI
RDLTPYDGDPTTLNEFINNIEEILLLIRGTDKTPYGQFLLRAIKNKIEGKAKALLLSLGIGLNWDDIKEALIGKFADKRS
EETLNFELHGLVHKRLPLQEFYERILDIQATYGRTMENMGIETAALNLKKESFEKTCLYTFIHGIKGPLGSTVRAFRPRS
LQEAYDVAIKERDIFMRENWSRQTQSSRSNNYNYNGRDYRRNDEHRVEKYNKKSEFDRNIRSRDQRGSYSKPRDNDRNFN
KMRAIMPKEEDRKRYDRDNNYSRNHGNPGQQRQTLNNIETAGVQELHNIDDKNFQLKASSDRRDT
>Gypsy5_Dpse_gag#LTR/Gypsy 1987-3597  [Drosophila pseudoobscura]
MVVSRSTENLALSEDTGKHCQICSEVIVYQVQLLSTSCGHTFHRVCFTAKSGNKRKCPTCQQDLNITSASAENLSPIGPS
TSRARMPSVTQSLQTRSQSKRVEALSPLEMANSENANRSPISVDPQQNQATMAETIQQSIVDAIRVAMVEQTRILATSMA
DQTNRLVRAISDGLQSTASVPSPNINAARMQPVAELEQQTIEQLFRLSTSEQVPVPGINQSGNSSSPSNLGQTRNVGSGV
STGSSASSLRADRVSQIMSNWKLRFTGKAGMSIEDFIYRIEALTKQTLDGNFEITARYASNLFDGSASEWFWRYHKSVPE
VRWADLCLALRGQFKDDRTDRNIRTEIELRKQRPNESFDDFYGVIAALADKLSEPMSEAALVETLRANLLADIQHEILYE
SAATVKSLRHLVRTREIFMQSVAKTKPPLAAPRTLPRRQVNAILDESIAPDSEEVGEEEDLEVSAVEFVCWNCGGKGHRY
QECMAERRVFCYGCGRADTYKPSCRKCNPHTAKNSLSRAPPKSARKQLVNQATNTE
>Atlantys_LC_p3#LTR/Gypsy 8388-9659 R) [Lotus corniculatus]
MSKMAVPRATWFSSKPPPIALSSSSSGLESSSSSLDSTESDPVWDKLTFYFNSKPIAWQHPGCEPYYTKECRDNLSNFPP
QDMQNLPSPAREEXXPHDEVQGGEDPIIQPDQVIGVMPPPKADVLASAHSEPSPRQLQTSPQQPRLSPQRFQQDARAALI
SPHAKGGSASSKTAASSHTSSERLSALLVEDPLSIFQSFFDGTLDLESPPRQAEIAETAQSGGVPDDSRIEAALVKLKGL
VFDTGFIGSVRVTPQLGQEVKELLAFLLSQQLDQIQADALVELQTLVVDXVATLDKAIAVEQSIETKKAQVVSNTNGLLP
AKEEALKLTARRTLIAAELSSVDARLDELHREVARLEKQKAMLIDEGPAVNSRLNALAAECTGVMLSTSQLSKEVAAEQR
MKQSLDCRIAAAGVQLEAFKSRI
>Atlantys1_gagpol#LTR/Gypsy 75-5639 (One frameshift in consensus) [Arabidopsis]
MDPNSSNSSGSGLPVQIPNDDVTDGHLPTDLPLGTKVDAVHNADAEDISQNSNSSGSDQITPPPQTRGGERNVTIQPPNG
DNPANPSNQVPPRPASELAELRAMIMNLINLTKNQEIAHRNLAAIVGQQRRDSTRMAHEVERDTAGKEVPPRETGIPAQV
PIDLTGTVSPADPTPRTRLDFASIDVSPPINRQVTFLQAPANALVENLATGNETSTTPAFPRLPVPPLLPLGYSPPRYTW
TRNQTTASSSRIPGNSTQQRTSIANPPSIPRIPGSDLLNSPTDPQAPVDPRNVVDMETFRNYAAQTNANMAQMHSRMHLA
VSDAPDIDRVIEETRRTPFTDRIARFRLRDVGRLRFPEYDGTSDPKAHLRSFRFAITRAYLTDEENEAGHCRFFAENLVG
HALEWFASLEGNSIDTFDQLAAAFLKQYSVLIEHRTSEADLWSLTQLQNESLRSYVEKFKAIKSKIANLNEEVAIAALRN
GLWFSSRFREELTVRQPVSLDDALHKALHFAKAEEELAVLALRFKESKTQNAPLAIKKPFKKENQTQGQHTLFAIEEAAE
DESPELDLGKYCKYHKKRGHSTEECRAVKKLIAAGGKTKKGSNPKVETPPPDEQEEEQTPKQKKRERTPEGGDSPPPARR
ERIDLVFAELDLGGRTGRSVTTPPPAPHKKNMRFPLRLSKFCRSATEHLSPKRIDFIMGGSQLCNDSINSIKTHQRKADS
YTKGKSPMMGPDHQITFWESETTDLDKPHDDALVIRIDVGNYELSRIMIDTGSSVDVLFYDAFKKMGHLDSELQGRKTPL
TGFAGDTTFSLGTIQLPTIARGVRRLTSFLVVDKKAPFNAILGRPWLHAMKAVPSTYHQCIKFPSDKGIAVVYGSQRSSR
KCYMGSYELIKKADPVVLMIEDKLAEMKTVRSSDPSQRGPRKSLITQVCIDESDPKRCVGIGQDLDPAIREDLITFLKEN
KDSFAWSSANLRGISLEVTSHELNVDPTYRPIKQKRRKLGPERAKAVHDEVDRLLKIGSIREVKYPDWLANPVVVKKKNG
KWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGHELLSFMDAFSGYNQILMRPDDQEKTAFITDRGTYCYKVMPFGLKN
AGATYQRLVNRMFADQLGKTMEVYIDDMLVKSAREKDHVPQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTERGI
EANPKQIAAFIDMPSPKTAREVQRLTGRIAALNRFISRSTDKCVPFYQLLRKDKKFDWNEDCEQAFKQLKAYLSEPPILA
KPEEGEPLYLYTAVSRTAISGVLVREDHEGQKPIYYVSKTLIDAETRYPAMEKLALAVVMSARKLRPYFQSHPIVVMTSQ
PIRTILHSPTQSGRLAKWAIELSEYDIEYRTRTSLKAQVLADFVIELPLADLDGTNSNKKWLLHVDGSSNRQGSGVGIQL
TSPTGEVIEQSFRLGFNASNNESEYEALIAGIKLAQGMGIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTLTQQ
FESFELTRIPRGENTSADALAALASTSDPFVKRIIPVEGIEHPSIDLTVKHAGMETSATCNFTRVTRSTTAAARALAAAA
EAGAAEEEPELGTPEQPASYEPEPYNDWRIPIIDYIERGITPPDKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYG
QQTKDLMKSMHEGQCGSHCSGRTLALRIKKQGYFWPTMLADCIAHSLRCDKCQRHAPTLHQPPEEMSSISSPYPFMKWSM
DVVGPMEASGGKKRLKNLLVLTDYSTKWIEAKAFQQVTEKQVEDFLWENIVCRHGIPYEIVTDNGTNLTSGKIKAFCDKW
KIRLTTSTPHYPQGNGQAEAANKAILSNIKKRLDSKKSMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPVETIV
PSVRRTASPANSDLNTQMLQDNMDFIDERRDQAMIRVQNYQQAAARYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLG
TN
>BAGY1_HV_pol#LTR/Gypsy 2595-6009 via tfasty with ATGP1_pol, 2 frameshifts and 6 stopcodons. [Hordeum vulgare]
PTPVRGRVNYVSAEEAAENPDVILGTLLVNHHPTRVLFDTGSSHSFISESYALLHNMSFCDMPIPLIVQTPGSKWETSRI
TYDNEILVYRLVFLASLLALKSLDINIILGMDWMSAHYAKIDTHSRNVQLTHPSGEIVNVSTRVAKFQLYSLNANPLLEL
EGILVVRDFPDAFPEELLGIPPDKDAEFVIDLVPGTFPIARRPYKMAPLELAELKKQLDEALNKGFIRPSSSPxSCPVLF
VKKKDGMDRMVVDYRPVNLVTIKNKYPLPRINDLYDQLTGSSFFSKMDLRLGYHQIKIKNGDIPKKAFVTRYGQYEYTVM
SFGLTNAPATFSRLMNSIFMEYLDKFVVVYLDDILIYSMNEREHAEHLRLVLMKLREHRLYAKFSKCEFWYHKMTYLGHV
ISGKGIAVNPERVQAVLDWTQPESVKQVRSFLGLASYCRRFVENFSKVAKPLTxLLKKDKKFESTPQCEHSFQELKRCLT
SALVLLPPDFSKDFVIYCDTSRQGLGCILMQDRHVIAYASRQLHPHEDNYPAHDLELAAVVHALKTxxHYLLGNRCEIFT
DHQSLKYIFTQPDLNLRQRRWVELISDYDLGITYHPGEANVMGDALSRKSYCNNLMLQRGQPHLDEEFRKLNLHIVPQGF
LSTLVAKPTLRDQIIVVQAYDKGISWIKENIASGNVRDFSVNEKGVVFFQNRLVVPKSKRLRQFILKEAHDSTLTIHPRS
TKMYQDLRQRFWWTRMKREIAEFVANCDVCRRVKAEHQRPAGTLQPLAIPEWKWDKVSMDFITGFPKTKKGNNAIFVVID
RLSKVAHFLLVRESIIASQLAELYVSRIVFLHGVPLGINSDRGSIFTSRFWESFQNAMGTHLSFSTAFHAQSSGQVERVN
QILEDMLxACVISFGMNWEKCLPFAEFAYNNSYQSSLGKAPFEVLYGRRCRTPLNWSETGERQLFGPDMIQDAEExVRII
REKLKTAQSLQKSQYDRHHKAVTSEVDEKAYLRVTPLKGTHRFGIKGKLAPRYIGPFRILAKRGVVAYQLEHPPHLSKVH
DVFHVSQLRRCFSDPIREVDHETLDLQDNLSYREYLVCILDQAERTNRRRNLKFLKVQWSNHSEKEATWEREDRLRLEYP
AFFPTTSKSRDEILLSGGE
>CALYPSHAN2_MT_gag#LTR/Gypsy 167-1441  [Medicago truncatula]
MTTPEEAQTMKSQIAQLLEQNEALLASVETIQQQQMQERTDSHHGELDEPEPQPFSAEIWNAPVPENFKPPHLPTFNGRG
DPSEHVTVFNTRMSVYGVADSLKCKLLAGAFADAALRWYMSLPRFSIVGYQDMIKKFTQQFSGSRHRKVLSTSLFNVRQG
PNESLKEYLARFNESTIKVSNPNQEVFVGAFQNGLRAGQFNESLAQKPADSIEEVIARAECYVKGEESNVERKARDAKER
GSSGAERRNPYVPPNRDRGAFKKTNDRSSHRYAPDHFTPLNTRPEKILKEVLESRVIPPAAEPRFKYMGLNKDAWCKYHQ
VLGHGTNDCIHLKREIEKLIQSGKLRGYTKNADDRRRPESTQDKPALEPKHTLHTISGGFAGGGESGKLRKKYARQVILL
GDAHEPERIPTISFSQEDFGQGNPSDGSERRTASTFQRDPVGFYWGEGTCTWLCHSQNDLRNRRSTKIHQDQVFGDQRTQ
FIQRYHWTSFHQSFRCLCLY
>BAGY2_HV_gag#LTR/Gypsy 394-1092 [Hordeum vulgare]
VNIVKPNLVEEKVIVYNDPIVPCAYTEKPPYPARKKDYSKAPTVIRRGYIRPLAPPEEIRVEPSVAIIKDLLAEDIDGHV
IKFCGDSARIAEPHAKDKYKPIVGLPVVSVKIGDHCYHGLCDMDASVSAIPRSLYDEIKDEIAPSELEPIDVTITLANRD
TMCPVGIVRDVGVLCGKTKYPTHFLVLATAQDSFYPIIFGRPFLNTVNAHIDCVKQTVTVSFEGVSHEFNFF
>ATHILA-7_SBi_env#LTR/Gypsy 3162-4851 via tfasty with ATHILA-3_SBi_env, 1 frameshift. [Sorghum bicolor]
MNRKVGGALRSIGRTLSFRSTRSRSSSQAPSRAGSGMDIDPPSPSEHHTPSSSSQREERYELTSLNQILLPLRPQVEILN
VVKTKEFTHTPIFDSALLHETGMDSEFELIFRMIGWEDAWEITEQGSKLLTMEFISSLDFDDDNVSFRMFNKPFTLTWKT
VSVALGFSDQCVVNIADVLKDFNKDDFWENITAKQPERKQKYTTEEVHHPTLRFMLKWLAFTFFPREELNTIRQDELHLL
YIMIKKRKASPVKLMLSYWKTVPTMRKCSISFTSWITRLAASLELLSKATLTFILDDRRIIGYDFFRAHMLKRRNNKVIM
IYKKYRNEYELPDRELGIYSVDSFTFPENTNIGRCPSARISRLPRTVYTGADPAPSGPAHFYYTNFDDPGASHEPHQPWS
THSGWEDQATYEQGEPSTSTGWGTFPTQEPDNTRQDFQRGRASFSVRGNTDHTTGGPYPFHAPPADEYMPPPEQHFGTPI
NDYPAMSLHLTNLQQGQQAMNDTLRRHEQWQHHIDDRFQQQEQWQHQADQQFRQLHEGQQHMQTGLEYLIEQMGFQPPPP
PHY
>Athila5_env#LTR/Gypsy 3785-5821 [Arabidopsis]
MDPEESRRRASARAVARGFAMINEKGPSRNQEAASPGFTRLTGRVQWPSMAPESSMGRSAAAREEIARGKRVWESEPVAE
EEVPVLEKEASEEDVEIDEEVPIVPARRRRNNPRRKKEPTIEEHYQYLMELSFEGTRYPHRPTMQALGICRDVDYLMEMA
KLETFFSYKCEGYKTESCQFLATLKLHFYAEERERELHKGVGYITFMVFGIQYSLPIRQLDAVFKFPTKYGIRQNFSKDE
LHDLWLTIAGPLPYKSSRAKSSLIRSPVLRYLHLCIASAFFPKKTTGHVNEGELKMLDLTLCFILGRTRNGIEMEGDRAD
TSLSVVLIDHLIGFREYATGIHQSGYGGSLCAGGVITPILIAAGVPLHTPTVTANYIDMEYLKRKCYLDRSAPADQLYFK
FKHSTLGLSRLALPCKEFTTVRIGNNIDFDPPQSILVNVLAPLQAEPSIGSESQEEGAEFNQEEAEQEDYTRPSNFQQAE
YGQAEYEQAEFSRAEQFDEQEDSCEAAAEQYFFEDYAESDQERDPGQVHKKLGMLKGLGKFQRKLFSGLKKKVRKMKRAM
DGMAVQIQELQRRQRSPPPPPEFRRCNSTSVAPQRDVRFDPPRASNYELGRSSTFSDRRFNRRPPGPVNQLVLNADPSRE
EYYSGYMLDGSTEYNPNTSTHDPEYTQDRLDEFVQNLFV
>Athila4_gag#LTR/Gypsy 128-3022 [Arabidopsis]
MPRQTRSTKQKELINLSVLDLGKLERTNRKTQRLAMADRVIRADAEGVLRDEDGQAYNEAGQRLDDHGLILPEDANEDQA
RLNAQLAARDAAGLGVERHQLGVDRHLREQNADAIGVERHNRGVDRHQPQIPAAIPPAAEPRRTLGDFNRPDLFYANRSA
IVPPPFQRNDYELKPGYFALVGQHPFHGLSHEQPMDHIERFEDLVLSIKANGVSEDYLLCKLFPYSLAGEAASWLKQLKA
GSLKTWRSIKIAFLNNFYDDAKSEELRNKLSTFTQGPAEAFKAAWVRFKEYQRDCPHHGFSEVQLLGTFFRGVDWRYQMA
LDAASNGNFNTRYPADATALIENLACSNSTKNADFERKKIAGAISGNQMAEVNAKLDSVHNLLTGKKHVHFAAEEETIEP
EPESEEGVFYIDGQGYRKFGQPQGNFSGNRFTGNQGSSNYTPKPAFQKTFPQSNFQRTYGNSAYQAPPPPPSSETRMESM
LEQILESQTKLVVEFNGKFDAVYTDLNGKIDNLSSHLKKLDVQVAQTAQSIKRQEGFLPGNPDANPRKSCNAILIREGDD
VWEELDTEDELELAVAEMVSTDTLQCRSTPYGTLFSETTQYDGVDRYPSSVDRHWIRTAPCEVQIPMQPESVYTPPVPYP
RKRRSKQEIHAAKCTTIMEKILTSLPKDASETSSAPLNRYVKRLVDNGISSDEAKLLTRDISAIMLPKVKKEKAQRVDIA
EYIRTITPDQTTEKLPDPGSFVLDCSISTSRFSRSLCDLGSSINLMPKSVAERLGMTNYRPTRITLLFADRSKRIPEGIL
EDVPVKVGNSIIPADFVVLDYEKEPKDPLILGRAFLATAGARFDVKRGRISLKVCDLEMEFGMDGSELTKPISSIASSTD
TPPQTAQNPNTEPHTTLPSAQLANESCRATVSIDTTTPVDRHPRDSQTEDSAHSLQPTPLEDLCDKFSSISSPALPSINS
LDSS
>Athila6C_gagpol#LTR/Gypsy 398-6072 estwise with Athila6B_gagpol [Arabidopsis thaliana]
MRTRSTGNQNLLFNDNINRTAREIRKRRTTVNPVPQQPLVMAEEQNQQNGHANIGAGDAPRDHRQRKGIAPPAIQNNNFE
IKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLPHAPXSITTWDDCK
KAFLSKFFSNARTARFRNEISGFSQKTGESLCEAWERFKGYTNQCPHHGFTKASLLSTLYRGVLPRIRMLLDTASNGNFQ
NKDVEEGWELVENLAQSDGNYNEDCDRTVRGTADSDDKHRKEIKALNDKLDRILLSQHKHVHFLVDDEQYEVQDGEGNQL
EEVSYINNNQGGYKGYNNFKTNNPNLSYRSTNVANPHDQVYPPQQQQSQNKPFVPYNQGFIPKQQFQGNYQQQPPGFAPQ
QHQGSAAPDADMKQMLQQLLHGQASGSMEMAKKISELHNKLDCSYNDLHVKMETLNTKVRYLEGHSTSSSATKQTSQLPG
KAVQNPKEYAHAITLRSGKALPTKEEPKTVTEDSEDQDGEDLSLEKDQADKPLDLSLEQALDLSLEQSLDPPLDSITRPT
TRPVIPAASPTAPKPVAVKNKEKVFVPPPYKLQLPFPGRHKKALADKYRAMFAKNIKEVELRIPLVDALALIPDSHKFLK
DLIVERIQEVQGMVVLSHECSAIIQKKIIPKKLSDPGSFTLPCSLGPLAFNRCLCDLGASVSLMPLSVAKRLGFTQYKSC
NISLILADRSVRIPHGLLENLPIRIGAVEIPTDFVVMEMDEEPKDPLILGRPFLATAGAMIDVKKGKIDLNLGKDFRMTF
DVKDAMKKPTIEGQLFWIEEMDQLADELLEELAEEDHLNSALTKSGEDGFLHLETLGYQKLLDSHKAMEESEPFEELNGP
ATEVMVMSEEGSTRVQPALSRTYSINHSTLSTDEPWEPIIPTSDDWSELKAPKVDLKPLPKGLRYTFLGPNSTYPVIINA
ELNSDEVNLLLSELRKYRRAIGYSLSDIKGISPSLCNHRIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPI
SDSTWVSPVHCVPKKGGMTVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLAKYPYYCFLDGYS
GFFQIPIHPNDQEKTTFRCPYGTFAYKRMPFGLCNAPATFRRCMTSIFSDLIEEMVEVFMDDFSVYGPSFSSCLLNLGRV
LTRCEETNLVLNWEKCHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLXPPKTVKDIRSFLGHAGFYRRFIKDFSKIARP
LTRLLCKETEFKFDDDCLKSFQTIKDALVSAPVVRAPNWDYPFEIMCDASDYAVGAVLGQKIDKKLHVIYYASRTLDDAQ
GRYATTEKELLAVVFAFEKFRSYLVGSKVTVYTDHAALRHLYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGAADHLS
RMRIEKPLXEKATVEKSXHQLNAVEGESPWYADHVNYLACGVEPPNLTSYERKKFFRDIHHYYWDEPYLYTLCKDKIYRR
CVSEDEVEGILLHCHGSAYGGHFATFKTVSKILQAGFWWPTMFKDAQEFVSKCDSCQRKGNISRRNEMPXNPILEVEIFD
VWGIDFMGPFPSSYGNKYILVAVDYVSKWVEAIASPTNDAKVVLKLFKTIIFPRFGVPRVVISDGGKHFINKVFENLLKK
HGVKHKVATPYHLQTSGQVEISNREIKTILEKTVGITRKDWSAKLDDALWAYRTAFKTPIGTTPFNLLYGKSCHLPVELE
YKAMWAVKLLNFDIKTAEEKRLIQLSDLDEIRLEAYESSKIYKERTKLFHDKKIITKDFQVGDQVLLFNSRLKLFPGKLK
SRWSGPFCITEVRPYGAVTLAGKSGDFTVNGQRLKKYLADQILPEVTSVHL
>Athila7A_gag#LTR/Gypsy 259-3043 via tfasty with Athila7, 2 frameshifts.  [Arabidopsis]
MNPKLGAIIGNGQANGGGHMPQHQPRAHQPIGAFDEPNIRGNRNGIQAPPVENNNFEIKSSLINMVQSSKFHCLSMEDPL
DHLDQFDMLCSTVKINGISEDAFKLRLFPFSLGDRARIWEKNLPQGSITSWDQCKRAFLLKFFSTTRTARLRNEISSFTQ
RSNKSFCEAWERFKGYKMQCPHHGFSKESILSTLYRGVLPKFRMLLDTASNANFLGQDIDDGLSLVENLAQSDGNYGEDY
DRTPRESNEMSNLHRKEIKALNEKIDKMILANQKPIHFVSESDVYQGYQEHMEGCVERQEEVNYAIGQGYNKFNLNYRNH
PNLSYRSNNVENPQDQSYPPLKPPGFTQQPNYQPQPQRNFQPKPQAYHHNQHQGSSSNPPPQADTNALLRQILEGQGRGA
IDLATQMKGMHTKVDDIYGELNAKIERLNVHVYSPSSSTSKHPMGTLKGKSETNHKEFCNAIFINDFDMVENMSYTQSRE
DGRIDENEKAIEEISKLLYGSNVENLMVASDEKAKKSTNGNDMITKSVEKKEASRVEPLPYEPLLPFPGRVLTKAKKKVF
SSFKANMSRVGAPLPCVENLSQIPLHFKFIQAILENREKVEEIMRAFDSPITPQTEPKSIIKLEDPGKFTIPCSLGDLQL
DDALCDSGASVNVMSLEMVKSLGVKDMNHHTSSIMFGDASSTTPLGLIEDYPLKVGDCIVPTDFMIVEMKDTHKVPLILG
TPFLNTVGANIDFPNKRVTLLHVNGNVSYPIKPFSTKFCGTITNEEVKTKKEPKSLKDQLEIKVVNAKNREDFTVDEKIL
DGECLHFLFDAQEESTKKKELGKAKMVLEKNKRMMKRTHPPTLDNSPNPTSSMTLTLLRYNDGILEYRVKCKGRSNPFSS
VKAILTPEFKEKGSKSVEELMKEVLTLAFKGSTRSFTTPPITSLPKVHN
>Athila7_env#LTR/Gypsy 6521-7837 via tfasty with Athila0, 5 stopcodons.  [Arabidopsis]
MVGGTKRRNPKRSKTMTSNESQSEPVAHWTKEDKKTLKVISPLLSFPTHFANREILKKMGLLETIDEFFTKMGLGAFTSM
DHATFSEPTNYFFSTMVYTFKNPKTPLAKEGIINFKVKTKAFSISILDLCEAYGFENKSEMSFPKFKGIHFLWGKLASGK
FSCNASIKSVRNLVIRYTLKLLAHALFGGGETSSTTVSEMCFLFQGVKELLVEDADGNGDERIVYDDLGNDVNYGWxIFA
SYLEDYKNRLIKVKTKFIYIGGSLTPLFVKAGVDLSPINALLKREYIDYENLVRSCSLKHSNDAFIYLYTDRxDNKLECI
LPSKEITNLESHDNIMFLPSEEYQVPNVxQFMEIEKEDLPPCPRDDPYNLNKYDLPEFTFVPKTKTEKFLQSLIKSQRKI
NKWQSxAIGKLLKKVKKLQPPDYVSSEDxLVLPSNEEED
>CER2_CE_gag#LTR/Gypsy 653-2990 via tfasty with CER3_CE_gag, 2 frameshifts.  [Caenorhabditis elegans]
MSGQRPNQDFELQTEVVFNHWRLGTPLARNHLLELKGAVVADLHIIRAQFEHEKEHWLAERAQMAEKVEATKLLMERATE
LVDSLKARIEILESQVRQPEASAVDGNGREDSSGTSLRGLRSVQVNTGGSGDGENGATRVANLAEEVAENLGNEELLVES
NAASASPPSNTSSGAGQTLQEDVRPDVTQRVVLRSESNNSDTMDVPFSETVNNASASSNGNVRRPRINMLRLRPAVQLTP
YRGTMAEDFSSFIRSFNDQCEASERMDDDIRLKFFLTCLDGSARNVAEDEMKLNPTIKLKELVEKMKSTFENPVLIKHKE
NQLRLCKQKKDESVEAFHLRIEELERAASTTESAVWTKRIVLDAFLHGLNKHIQEKVRLEWPDTMVKALEVALRVEALDA
ELHKPSREAAEALAIYKPIPKRNERFKGECFFCNKVGHKAADCFKKNGKKDKKGKFGEKKPQDPVNHHKIEKPQGMVIST
MVDDSEPSYEVLKSQLEEMARRHELLQSGIRFEDEKNGVRSLAWPKMTQVSEIADSVPCQYSQSLGNSFITAHIPIRANG
IPYAALVDTGANITVASRNILKGLGIVRLQAADNDNAVGFGGNEVSMIGSAIVRFQIGSQVVKQRVHFTNGHCMPDIDGS
YQFIFGNDLLSRLPIFMFDYQQKMFHVGDDAIPFGRAPGQNVKPRNYQVKVSEDTIIPAGTEKYVKCSIDASFGSEKDVV
LMIDSKIGENDLFVSPAVVMASNAMILVSNPTEEDKTISTDVHAAVANRISTDGNVLYCF
>Gyp1_Cis_gag#LTR/Gypsy 421-1587 [Ciona savignyi]
MRKFFGFSGRSVKKERNLPVPENNNHGYDAGYDDDYHWSEDYNLQDVSLVGDNISLSSPTPNVKQPTYYQKTPFNRTIDS
QQQHHRSGPLLSDVLNSLTDYLKKSSVNLPEFTESMPESWFDSAESIFRRFDVVSEDDKFEFVKESLRPRHLRHVEHLLA
KRDRILPYTSLKEALISNYSVSKTDKIIALMNFGPLGDQKPSEMLKDMLRLTGPYPDENTTIWLRQLFLERMPKNVRSTL
KAFTSDSLGAMSSRADSIIDDSRHSAAFSSSGVANPTLNDLHSINLAVVENLRVLNNKLVNRPSNSASKNSGYQDNTVYI
DDDRDEEHPPGQWSNRGRGYWRRPKRRKLKVIDSKEDPQKDQKNSQARRWIWRIASCVALLNRHLYCL
>GYMAG2_pol#LTR/Gypsy 1540-5423 via tfasty with GYMAG1_pol, 2 frameshifts.  [Magnaporthe grisea]
MSTIAQIGSNPRPKSFIIRTQIQVNGVALSVKALCDTGADISLLISPAIAEQAAERLGARLQRLKTPLLLSDYRKQDAGR
ITHKLKATLEIDGRRFSNQMFYVTESGHDMFIRQDWLVEQDVWIHPKTQTFAWPERTPSLAKFSPAIRLPNMLDKPDPVA
QADAERRDRAFERETKRVQILRRPWRQTTFLEPRPTTPVVLGEDRDVVNIAALQHKLDTDPRQKRWKSCPIPTQPITLEI
GPEKPAISLSAVGRSYQWKTNKGEPIPFPENKDPDHVELVRSKLPSRLAHLEGFFSKAASTNLPPHRPGHDVILELDKPK
TGSPPTYRTPVEFLPLEKETVDELLRIGFIEPCMQADPAPVLFVPKPHSKERRFCTDYRWINQFLKDRFVPAPDVNGTIF
NCRNAKRFTKIDIIRAFNRLRMAVGSEYLTAFRTRQGTFQWKVLPFGLKVGPAWWQSFINAQLNELLDLFASAYADDVLV
YSDGNEEEHWDQVEEVIYRLSRVDLQGDIKKSRFNVTTVDYLGIVMDAGLGIRIDPDKLQAISDWKFEDLTSKTAVRSFL
GLCNYIRMFCHHASSVAEPLNRLLKKDAKFAMGPEQRRAFEEMKRLACDAPVMAFFTPGRPTKVETDASRNATGGAIWQQ
QPGGEWKPVGYFSKTMTPAERAYPIQDRELLAVVQTLKHYEPELLGTSFFVVTDHQALVYYSTKRLISTRQVRWADFLAN
FNITFQYRRGKDNIAADALSRKTADLPTVKAREKEERTMILIPPEKITPTVAAVSTADPNAHVVSGADLVDLIRQENEKQ
KLGQHQGKLVVPETTLDGQIFLRTALIREAHEPKIFAHAGQNKTIQMIKRRYFWEGMSQTIRKYIKNCHDCERNKGRHDK
TPGLLHPLPIPNYVWEHVAVDGKDMPKDKFGYDYVWVFVCKFSRLIATIPGQKTDTAEILASRYYRYLYRFLGLPFVWIS
DNAGPFISEFMETINELTGTKHRHGSALHPQTQGAVEITNQELDQKLRFYIDKYQTSWSVHLPALDFAHNAAWHSSLGMC
PLKVVLGTEPRNPLSTDLPTTTVDSDQKRKALQIVRQTKEVQELARQNALKTQARQEEQANKKRRPVDFGVNDYVFVKKK
GFPTTAPTTRLDSQWTGPWQILEERGYSYVLDVPESFKGKNLFHADRLRKAAMDPLPQQKREPPPPEEINGEPEFVVDKV
LASRLFGRSKILQYQVAWQGCDPDDTWYPAENFKNSATALDDFHKKYKDAAGPPKRLAIWIKAAAEDKLDEPNQEDNVAE
HGELNGKRKKRRHG
>GYPSHAN2_MT#LTR/Gypsy 24-4370 via tfasty with Gypsy1GM, 2 frameshifts  [Medicago truncatula]
MTSPPRDELLHRILLSQQQFQEQITTLTTEVNQWRNRFGPPGFTPTGPDITAPSTTTMKLDIPRFDGTNAPGWIFKIKQF
FDFHQTPEEQRLRIASFYMEGEALTWFQWMHSNSQLLSWSGFLLALESRFAPSLYQDPQGELFKLCQTTTVNAYQTQFET
LANRIIGLSSQFYLSCFVSGLKPEIRREVQAFQPMTLTQAISLAKLQEEKILDRSNSSKPRYNYPISSASSPTPQPTNSF
RPTLSVTPPKTPTTPIKRLSPAELQARREKNLCYNCDEKFTPGHRCRRQFHLLIVQTDQPETTEEITHISTNESDSSIDP
EIVPETEPAQISLHALMGHSIPQTLRVTSHIQKKPIHTLIDSGSTHNFLQDRIATQLGLKLQPAEQFQVLVGNGEELQCI
SMCSNVQLMLGPHEFFIDLFVLPLRGAELVLGVQWLKTLGPIVTDYTQLTMSFIRNGHHILLSGEPKPTHAEASLHQLQR
LITTDAIDTVYQLQEISSTTNPTSTTHTDDRINTLLKQYSPLFATPHTLPPPRQIDHQIPLTDNNQIVNVRPYRYPQFQK
REIEAQIRDMLANGIIQHSSSAFSSPVLLVRKKDGSWRFCVDYRALNALTVKDRFPIPAIDELLDELHGTRWFSKLDLRS
GYHQIRMAPQDTHKTAFRTHQGHYEFLVMPFGLSNAPSTFQSSMNRILQPYLRQFVIVFFDDILIYSPTLEDHRHHLEVV
FNCLLENQFCLKYSKCAFAQNSIIYLGHVVSDSGVGPDPEKNQAMVEWPQPRSVKHLRGFLGLTGFYRKFIRHYATIAAP
LTELLKKDAFLWNDSAQQAFDSLKLAMTAAPVLALPNFTEPFILETDASGSGMGAVLIQNNHPICFFSKQFCPRMLNAST
YVRELCAITSAVKKWRTYLLGSKFVIHTDQRSIRELMTQVIQTPEQQFYLAKLLGYSYEIMYKPGAQNRVADALSRIHCF
AITVPHWDFLDKLKEQYTTDEELKKWVEDIINKPSTNPGFQVHDGLLFLHGKLFIPSSSSLKLVLLEEFHSSPLGGHSGI
AKTYGRLRENVTWFGMKKDVEKFVQQCHICQVMKSPTHAPFGLLQPLPIPERVWEDISLDFIVGLPSFQNNTVILVVVDR
LSKSAHFGMLPTGFTATKVADLFAQMVCKLHGMPKSIVSDRDPIFLSQFWKGLFKASGTKLRMSTAYHPQSDGQTENVNK
TLQQYLRCFVHDQPKQWGKFLHWAEWHYNTSTHSSTGFSPFQIVYGRPPPALPEYITGSSPVQALDTDLTQREQILAVLK
KKLLKAQATMKEFADKKRIPHKFVVGDYVFVKLRPYKQHSVAGKRIQKLSNRFFGPFKITKAVGEVAFELELPPTSKIHS
VFHVSKLKPCHGHSPGSLSLPDNIVDNHPLLQPLTVLDWKHEAHDVEPYVLIQWESSFPEDSTWEPYSAIAQQYPEFHLE
DKVTLEGPG
>Gypsy1_CB#LTR/Gypsy 1-4149  [Caenorhabditis briggsae]
TGDQATELADLTKQIGLLVNIFAKLAQASANAPLTTTPTSGHNLLVESISKRIPIFTYDPDDDQTFDTWYARYEDVLTKD
GESLEEGEKSRVILSKLSSKEYSHFTNRILPKLPNELNFAELISKLRETFKSTSSIFRKRQDFLRTEYFGGAIEEYTGQV
LRKFTSSEFKKMTDDQVCCMVWINGLRDNTYSDIRTKALQVMEAKPECTLLELEQNIKRLLDVRADSKSVCKLEPKSSEI
NAISTKETKRDKPQKAPPSPCYKCGGNHWAKECQKQVTCHLCKKDGHIAKFCRTKKRETDQKGKNNRIKSVMVRSASTFE
PSRIYRIVTINGTKIQMQMDTGADVTLISTKDWNRLGRPQLQAPTIQVKSANHQPIKVRGSFQCNFVINGNVASGQAHVA
ETGTLLGTDWISKDPTLWKTLNQQICAVSSDVGSACDYLDNTREQLKSNLEKEFNNVFQPGLGKCTKTKASILLKPGAQP
VFRKARPVPFAALTTVSEELERLQQSGVISPVDHSEWAAPIVLVKKKNGSIRMCSDFSTGLNDSIQQHQHPLPTADDIFA
TLNGGKYFSQIDLAEAYLQIEIDEQAKQMLCINTHRGLFSYNRLPFGVKSAPGCFQQVMDAMITGLDGAAAYLDDIIITG
STIEEHNSRLKSVFKRIDDYGFRVKLEKCTFLMPRITFLGFCIDKDGRRPDPEKVTAIQQMPEPKNDSQVRSFLGLIQFY
GTFIKELFKFRPPLDALTKKDAEFKWTSECQSSFDNIKQMLQSDLLLTHYDPKLPIIVAADACQYGIGAVISHRFPDGSE
KAIYHISKALTAPQRNYSQIEKEAFGLITAVTKFHKFIHGRHFTLKTDHKPLLSIFGEKKGIPIYSANRLQRWATILLNY
DFTIEYVNTHDFGQADALSRLISEQIQQKECEDRVIAQVEMDVITNLVNTCEQLPVTAEMVKDYSKKDTLLAEVYEYTTS
GSWPNNIDKSSQIVFFHNRRDQLSIVSDCLMFNDRIVIPVSLRARVLKMLHRAHTGMVRMKQLARTLVYWPSIDKDIENI
VRSCDQCAAVSKNPIKNTLCSWPISTKPWQRVHVDYAGPVEGTYYLVVVDSFSKWPEIVPTTSITSAATINILRKMFAQF
GDPETLVTDNGTQFTSAQFHDFCKDRGIQHTRSPPFHPQSNGQAERFVDTLKRALGKLKGEGNTDASLYLFLQSYRSSPC
TASPNGSSPAENFIGRKIRTFLDQLLPTDQLPNSHDTEMEKQFNNQHGARCRNFNVGDKVYVKDYRSINTTTWIPGTIQR
RIGRTMYRVTVENNNFWIRHTNQLRRRDTPTSFDVPLDTMDTMDAIDWTPLSTTLPDRSPPTPAPILPGSPTAPSPKPIR
KSTRTVKPPPKFVMKPNKKSYH
>GYPSM1_pol#LTR/Gypsy  pol-like part of a much larger protein encoded by ORF 3929-18547 [Schmidtea mediterranea]
VPRTSQRSRSVDQDPETRTIAMLQTLAGPTLTVPIEINGVEIKAMIDTGANISAIKMDKIPGRLWPCIEEANMDVITCSK
ESVAVIGKIWSIIEYKNVKINTYLAVIRRLSADCIIGTDLMPELLKEIIIDLGSMELRDKTGRICMLKSEVRCSEKIVVP
GRTQMICYVKVNEETRGEMIFEPNHKFEKKKELPLAREIVYVNDNSEIPINITNFDEEDKVIYENERLGKLTPMMDIELP
TTKTEGTEEELWTIDSQLLNETEKEQLQKLLMEFKDIFAASDLDLGTSDVTQHTIPLTDDTPITLRPYRLAEAQKSEAEK
EVQKMLDAGVIEPSCSPWQFPVVMVKKKDGTQRFCIDYRRLNAVTKRDTYPLPDINEMLQTLHGAAYFTSLDLKSGYWQI
KVKEEDREKTAFTIGKDLYQFKKMPFGLTNAPASFQRCMNFVTHGIKQCMVYIDDLLIYSSTFEQHLKDIRNVFVRLRQW
KLKLKPSKCDWAKEKVTFLGHIVSAKGKEPDPRNIEKIKNCPAPKTVTQVQEFLGLCGYYRKFIKSYATIAKPIQELTKK
DTPFIWEKEQQTAFETLRDKLISAPILVHPDFKKPFLLATDASGYASGAVLGQWDDEKRERVIGYYSRTFKKHEKNYSVT
EREALAIIQAIKHFKYLLWGHEIYITTDHQPLVWLGQHKEASSRLMRWAMQLQEYSPYIKFKSGKANANADCMSRFVFEE
LMDHDVRRICMIIAEDIDFTKLRNEQKEDEELKTIIEFMETNDMKIFDNNSKLKEHMEKHRHRYTMEKGWLLLMDGEKRL
MCLPESRRKEVLMQYHDGKLGGHMSAKKTEARLRQKYYWPNIGEDVKGWIKNCLICATRKSTGSKLKAPLKPMPIPPEPM
TMIAMDVVGPLPETNDGNIYILVVTDYLSKFPEAFAIPDQKARTIARILVEEICCRYGTPKQILTDQGTNFMSEIIEEVT
NYFRIAKLRTSPYHPQTNGQTERFNGILIEMMSNYVSRHQKDWDRYINLCLMAYRMSIHSATKMSPFKLMYGRECNMPID
LEYQPPISQYMEIDDYVTGFKERMQEIWKTAGMNIRFNQESYKELHDKKRDVREHNFQVGDWVIIATPEIIPGVARKLQR
CGKGPYEIMYVNENNARVKLVNNPLTRPIYVNVSRCKAIPRTITREPE
>GmGYPSY11#LTR/Gypsy 593-5176 [Glycine max]
MSGTNPNDGVGLSQFQMQALMQHLERLMKQRDDALHERLDQMENRDHNEEERRRRGNDGVPRQNRIDGIKLNIPPFKGKN
DPEAYLEWEMKIEHVFSCNNYEEDQKVKLAATEFSDYALVWWNKLQKERARNEEPMVDTWTEMKKIMRKRYVPASYSRDL
KFKLQKLTQGNKGVEEYFKEMDVLMIQANIEEDEEVTMARFLNGLTNDIRDIVELQEFVEMDDLLHKAIQVEQQLKRKGV
AKRSFTNFGSSSWKDKGKKDGAATSSSSTPIPSKTRSKSQEEPSKRSRDVKCFKCQGLGHYAYECPNKRSMVLRDGEYIS
ESDVEEEEESEYVEEEETPEGDLLMIRRLLGGQLKHEEESQRENIFHTRCLINGKVCMVIIDGGSCTNVASARLVSKLNL
ATKPHPRPYKLQWLSKDGEVQVRQQVEVDVSIGKYNDKVLCDVVPMEASHLLLGRPWQFDKRANHDGYTNKISFMHQDKK
IVLKPLSPQEVCEDQKKMREKLLQEKREKEKVSKTLESEKKRETLERKKSEQKKSETLEVRESYLATKSEVKRLFRAKQS
LYILFCKNQILTTNTFDDFEVPSSVKTLLQDFQDMFPPNVPSGLPPLRGIEHQIDLIPGASLPNRPAYRSNPQETKEIQR
QVDELISKGWVRDSMSPCAVPVILVPKKDGTWRMCSDCRALNNITIKYRHPIPRLDDLLDELHGACYFSKIDLKSGYNQI
RIREGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHILREFIGKFVVVYFDDILIYSTSLDLHIDHLKSVLTVLR
EEQLYANLEKCIFCTNHVVFLGFVVSSKGVQVDEEKVRAIQEWPTPKSVTEVRSFHGLASFYRRFVKDFSTLAAPLNEVL
KKNVGFKWGEKQEEAFNVLKQKLTNAPILALPNFQKSFEIECDASNVGIGAVLMQEGHPIAYFSEKLSGPTLNYSTYDKE
LYALVRALKTWQHYLYPKEFVIHSDHESLKYIKGQGKLNKRHAKWVEFLEQFPYVIKHKKGKGNIVADALSRRHALLSML
ETKLIGLECLKSMYENDETFGEIFKNCEKFSENGFFRHEGFLFKENKLCVPKCSTRNLLVCEAHEGGLMGHFGVQKTLET
LQEHFYWPHMKKDVQKFCEHCIVCKKAKSKVKPHGLYTPLPIPEYPWIDLSMDFVLGLPKTSNGRDSIFVVVDRFSKMAH
FIPCKKVDDASHVADLFFKEIVRLHGLPRSIVSDRDSKFLSHFWRTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLGTLL
RTVLRKNLKTWEACLPHVEFAYNRVVHSTTNCSPFEVVYGFNPLTPLDLLPMPNVSVFKHKEGQAKADYVKKLHERVKDQ
IERKNKSYAKQANKGRKKVVFEPGDWVWVHMRKERFPEQRKSKLQPRGDGPFQVLERINDNAYKVELPGEYNVSSTFNVS
DLSLFDADGESDLRTNPSQEGENDEDMTKSKGKDPLEGLGGPMTRARARKAKEALQQVLSILFEYKPKFQGEKSKVVSCI
MAQMEED
>CER6_CE#LTR/Gypsy 25-4385 via tfasty with CER5_CE, 3 frameshifts.  [Caenorhabditis elegans]
MPGGKKDNKAEGDANAALLQTLAAMRAQMEAQGRASRLALETQTKNAERQLALTEKLMEENRFLREASGSGEMPRQAAGG
ESRVQNNARIMSDLIKRVPKFQYSVTEPDTFKRWWSRYQLTFTEDGKDLTERERNRMLLECLEESAYHRYVDSQRDVTDF
LGIPFTETLQNLTKAFGSHRSMMMRRQQCLQISRANGESLDPLEYSNRVGDAVLEAKLASMSTDEWSVFIFLRGLDAPGD
NPAKAYLMQFCETAEKKGEKLKLSDIHDEWIRFIQMKQQTKVVSALPVKPTPQQAVEVNKVDPRTPKKKKFKQKQKHSKS
GNEKKEFIPTCFTCKKSGHTAPNCPNNSNNNSNAVPKNGKRCQIIEVGGLEVESEPSKHSLTVTVEDKDLAFLLDTGSQI
TLINVDSWKEIGSFLQKVTHSICCANGTPMTVKGRVRVNFKLKEVDYTDYVYVCDRDTNLIGTSWLNHSPEMRAAIAIMV
NQVVVNTDSEANRLAETLKREYPDVFSDELGLCIKEKAQLRTEEGIKPVFKKARPVPFGSREAVEKELFRLKDMGVITPI
TYSKWAAPIVVIRKKESNKIRVCADFKCSGLNSALKDEIHPLPTCEDLFAKLKGSVFSKIDFRDAYLQIELDDESQELAV
INTHLGLFKYVRMAFGLKPAPAVFQKIVDKLISGIPGVSAYLDDLIIAASSYDEHEAILRQLFDRIREYGFRVSPEKCMF
AVSEISFLGFIVDEKGRRPDPNKASKIRSMKAPGDQKQLSSFLGAVCFYSRFVPKMSELRGPLDRLMKKDVEWSWTKTEQ
IAFEKLKNTVADATMLSHFHEDWPIIVAADASNYGIGGVLCHVNPDGVEVPIAHYARSLTATEQKYSQIEKEGLALIFTI
KKAHKFIFGRKFKLQTDHQPLLAIFGSKKDLPVHSQNRLVRWATTLMSYDFDLSVSTSKFAKADWLSRMIQEFPRNQDDV
VIAEIWDDDNDDSLSSNFTPVMQEDIQVASEKDYEVSAVMKLLSDNSWKSKPDTDIEKYWSRLKDRLKIIQGCLLVDDRV
IVPKQLQSMVLKQLHDGHPGVVHMKQKARSFVFWRGLDSEIEKLVRQCNNCQENAKMPRVVPLKLWPEPEKPWTRIHVDF
CGPLNGQWLLVVVDAKSKYAEVKLTRSISAMSTVDLMEEIFSIHGYPEVLVSDNGTQFTSHFFKKMCESHGIIHKTSATY
YPRSNGAAERFVDTLKRGIAKIKGEGSVNQQILNKFLISYRNTPHSALSGATPAECHFGRSIRTTMSLLMPKPDANHQAD
LSEYQKKMKQQYDSRNGTRAKHFQVGQQVYVKVQHGNKSEWDYGVVSRKIGSVLYEVQVGSRLQRSHVNQLRLRYGDKSS
VEKFEDTIYPMFFTFANHSDKFNNSPGFNHVSSPGSTGGKLIFFILQVCPQIVCSQLLNVLVCRGRTVAMLTTIHWFYLM
GIPMLTWLVEDLKN
>CER4_CE#LTR/Gypsy 98-4232 via tfasty with CER5_CE, 1 frameshift.  [Caenorhabditis elegans]
MQQQLAEQQVLNRQLVEHMSGRETEARAVAGGEGRTRRNNVHLINDLKKAVTKYQFSLEEPDSFRRWWDRHHLIFSEDAA
ELSERERTRLLLSCLEEGTFRRFVDTQRNICKDIYEVPFVTTVEALEKALGSHRSLMIRRQTCLHLSRTNCTSLDPLKWT
NQISEAVLDAELAKMSTSDWGIFLFLKGLDAPGDAQAKAYLMQFYETSDRKGEKLTLSNMHDEWVRFLQTKSQTKIVSHS
SPKTSADVNKISVKYPPKKPAYIAADAKSDPPKTSKNVITCYRCGAAGHMQYDCPEKRPQKKNYKAPTREVKCISVEGVA
VESGGSKKRSLSVKVGGRSVACQLDTVSDITLLSKGSWVKLGSPKLEPVPHKIVCANGSALDVLGRTKVSFELKGVEYVD
YAYVSNRENNLLGMSWVSHSPEMRDALDVLVTEVVEVNQEEASRVELALKQAYPEVFTEGLGLCCKEDAKFRVNETAVPV
FKRARPVPYGSLQAVEQELNRLLDLEVLEPITHSDWAAPIVVIRKKDTGKVRVCADFKCSGLNNSLIEEIHPLPTSDDLF
GTLQGCIFSKIDLKDAYLQIALDSESQKLAVINTHKGLFKYRRMTFGLKPAPAKFQKIIDKMIAGLPGVAAYLDDVIVSA
NSLEEHEKVLHELLKRIKDYGFRISPEKCNFAQSEITFLGFIIDKRGRRPDPKKTSVIRSMKAPTDQKQLMSFLGAICFY
GRFVPKMSELRGPLDKLLKKDADWIWTDVEQKAFEELRKAVADSTMLSHFNSSWPIIVAADASKYGIGGVILHVNPDGVE
VPIAHFARSLTETEKRYSQIEKEALALIYTVKKSHKFVFGRRFKLQTDHRPLLALFGDNRDLPVHSQNRIVRWATTLMSY
DFELSYVATEKFAKADWLSRMIQDYPRNEDDVVIAEILEDFENEELGDDSRLSPVLEKDVREKSALDRELAEVTQYVETD
GWRARPLTDVEKYWGRLRQRLKVLRGCLLLDDRVVVPKSLQMKVLRQLHEGHPGVVRMKQKACSFVFWTGIDKDVEKLVR
GCENCQESAKMPRVAPLRPWPEPQKAWSRVHIDFAGPVNGHWFLVIVDAKSKYAEVKMTKTISASATVSLLEEVFATHGY
PELLVSDNGTQFTSNQFKLMCQEYGMEHKTSAVYYPRSNGAAERFVDSLKRGLAKITRSGVVTQQALNKFLICYRNTPHS
ALAGATPAECHFGRKIRTKMSLLVPSREIVEGPLSDCQNRMKFQYDSRNAARAKTFELGQYVYVRVQKGNVWSWEHGEVI
KRLGEVLYEVQVGSRVQRTHVNQLRKKFVGDSEDVLLDTVYPCFFDCGLTGRSRIASITRGRYLPHISNISLLIIPSPLA
RMFPLSIPHRFSVVTGGS
>Chimpo_gag#LTR/Gypsy 24-896 [Drosophila melanogaster]
MQNTGDCLPAPPTSPDSGEIQRGNSAGTVIPVVESVATIKLPPFWKQNVRLWFVQIEAQFQCSRISSDNTRYYHLISALD
ADIMTEVSDVLAQPSEVNKYEHLKEIIIKRFTESPDRQLQRALLELDLGDKKPSQLLRQMTTLADGRASADALRVRWLSQ
LPQHVQRGLKLLRSATLEEQTALADDLMEEESGSFVMAAGSSSAPQFRGNTREYAPAAGTSVVDDLKRDIAAIKASLTLL
QNMQPPSHSRSADRNQQQLRAPRVCFYHAKFGPNARKCSSPCAWVPQQGN
>Erika1_TM_gag#LTR/Gypsy 1098-2237 via tfasty with BAGY1_HV_gag, 2 stopcodons. Goes over without a hitch into pol, but broken up here for convenience. [Triticum monococcum]
MLQFSFRWIHLLYFSICVLMVVNLFRMAPAKSTSQNQNQDPPPPPPPPEAWQAVMAATNANTQLIMQIIQERNxSSQANQ
GSNQNQFATLNQFLANGPKTFSNCVEATDADDWLVDLGKHFECSNVRPEDFVKFASFQLKDQAAEWFQQYRDSRGGRLIT
WDDFRRDFRAHHIPQSVTESKREEFRNLKQGSLSVYDYNKLFQKLARFAKQDVPDEKSMIYQFRGGLREEIQLALVLFEP
LRYDEFYNMALKQEAAQLRCDASRKRVRDTSSSSSTQVAKQQKYWLPPPPFRQPYQxKSKGGSGSSHPPNPGLQNKTSSQ
APRSSAPYHRPLSEVTCNKCQQKGHYANKCFNQRRLPPPPPVRSASTAVVKHNPKHAKVN
>CINFUL1_ZM_gag#LTR/Gypsy 45-1175  (CINFUL2A_gag very close) [Zea mays]
MASFNNQARAASAPKLVLPITGGSCSERANKKQKKEAQRRVQHVGVQGPFIKSRWSHIPITFSQEDLQLKDYPHNDAMVI
SCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQEPEDKIHDATHPLCGFGGRQIVALGKITMPITFGFINNTRTEQVVFDI
VDMEYPYNAIIGRGTLNAFEAILHPAYLCMKIPSDQGPIAIHGSQEAARRAEGNWTDSKAIHNIDGAEASKAQLEADTKQ
AEAEATTIQAETEAGPSVPTEMERADPKEKSIERITTEKIEAPGPEASNKSIDYIIRHASGKVLSQEEMLEAQHYAQKLR
YPKGALVFNGSGEEDFLYCLPDDKEISVCWEIGKSIGFPKLEDGLSIYRRTNLLTA
>Gypsy9_pol#LTR/Gypsy 1527-3300 via tfasty with Gypsy4_pol, 2 frameshifts and 1 stopcodon. Large deletions. [Drosophila fruit fly genus]
FFRGNSLLPYITRTVAGHIINLRIDTGASKNYIKPLPFLKTLTPVDNLFQVNSIHGHTKIEQKYLIYLFGTKYLFVLNSx
KNFDGIIGLDLLRNVDATINLTSNLIAHKFGSEPLQFIKYQNVNFIKIDDSNIPLAVKENFNKMINDENGHxKKRLVIDY
RKLNQKIIDDKYPIHAIFTNMGRAQYFTTLDLTSGFHPIELAERDRKKTVQREENLAFIVSSKGLKTSPEKIHIKDFYVQ
PPNTLFGLRSFLGLSSYYRCFTKGFAAMARPPTDMLKGDNGKVSTNQSRRVRINLNQSQQQAFEKLKNVLASKDVLLIYP
NFNRPFDLTTDASAHGDNETNFATNERELLAIVWALKNLRNYLYGVKNLNICTDHQPLTFTVSDRNPNAKIKRWKAFIDE
HNDNIIYTPGKENRVADALSRQNVNALDNHPDSNESDNDSNIATIHSEQSLTYSVETSDSPSVKTFILFKDKHRHIIQFT
DRESLWHTVLDSVNANVVNAIHCELPILAFLQHRLIETFPSTTFRYCKYVVTDITDKTEQTEIITTEHNRAHRVAQENVK
QILRDYFFSKMSRTFCHHLNLNYCDGDRYNKNN
>Gypsy-1B_AMi#LTR/Gypsy 139-2982 (fragment)[Crocodylidae]
MADEYVRMTVPELKELAKERGLHVKKGLKKEELVKLLCTGESEPASASRSSSPEPDPGTHSRSSSPEAAGRSPSEGERQR
LHEXELKRMELEEKKEQRQLEEKKLEVKRMELEAQREREQDSWRRRGWRWKPSWRQKRWSSSRKSWRLSSVCRPTGETRT
LRKRPGNREHPKLDVSAFARYRXGDDPAVFLSNFERQAQRCKVPEEKIMMYLSALVEGDMAVVLNSLPSDAADDYNAFKA
AVSKRFXLGPDYFRKKFRNTRPQPGKSLTDYVALLDDTYIKWLAEAKVDTLEKXRHLLVLEQFYFWCPREVKTLVRDRDP
KNAHEAAEIADRLLLNREKPPYSGKEQKGFQRGGKGGPGQKGERGPPPAERKAAPDSDKPPNSEKRGCYNCGEQGHIKPN
CPKLSNRPRPVRRATAVSSEGEGRSHSEGSVCCYRITNSEEVMAPHRTMITVKERTLVGELDTGSSVTLINSNLVSPADI
IPGKTLTIQGVGPPPLTVPVVRAPVVWNDCATYLEMGVLEGAPVPILVGRDLMGQESQLRRWEQTQEPKPCTVHAVTRLQ
SRKAKEGGLENPQETATPLATGEGTPADGDCTPVPEGTSDPEGGLSDSPGEVCIPSVAEGGETSREETQEVPEGESALPA
GAPELPADCLAGQEEFKREVREDPSLEGLRQMAQEQETEFTPDKREQVVWDKGLLYRLWVPKNHAETWEPQRQLIVPRKY
RQQLLAMAHDLPCAGHMGRERTRQRLQVNFFWPRIAQNVTDYCKSCETCQRTGKSGDKRRAPLQPLPIIDQPFHRVAVDI
VGPLKHRTRRGKKYILTLVDXATRYPEAVALTSXEAPVVADALIKVFCQLGFPSEILTDRGGNFMAEVMKCLWDCCGVQH
LKTTAYHPQTNGLVERFNGTLKGMLKAYVDSNPNDWDEKLPHLLFAYREVPQESTGFSPFELMFGRQV
>Gypsy-1_PPl_pol#LTR/Gypsy 2372-6403 [Postia placenta]
TGPARPDANSHAVPQASIGRTFYTLCNAYNDPDNIADLISSLEPPEQYDSFLRQFYYTAPTNTTPRESPWVDRALGPNPT
SAPVKRYKPVDRKVRPVPSYMPNPSAQTFKPIPSPELEPLPLEPPSLANFEPSERLTRERLQIILETVPSGFLNAREIDL
LVFVLKERQFALAFTDAERGTFSPRYFPDYEIPTIEHVPWQLPPNRVPRAIEDDVYTLLTEQRDAGKYEPSSASYRSRII
IVEKKTGKYRICHDLQPLNGVTIRDSALPPNVNDFAESFVGYAIYMIADLFSGYDNRRLAEISRDLTTFDCLIGAHRLTT
LPQGFCNAVQEFQRCITHVIRDEVPHHAGAFVDDVGIKGPCSTYNNMPVVPGSPIRRFVYEFLTTVNRILCRFELAGITA
SGYKLVAATPELHIVGSIASLLGWHLAHGVVNKVLKWMSCTNVSEVRSFLGIAGVARRWIQGFSIIVRPLTRLTRKSVDF
AWTNDAQEAMDLIKQRVTTAPVLKPIDYQLARAISPHDGRPSDHGIVIVAVDSSKYGAGWVLYQMRETDKHPALFGSCTF
SATESRYSQPKLELYGVFRALKELRHRIWGLYFRLDVDAKFLKQMIHSADLPNAPMTRWVSYIQLFDFYMQHVPAMAHQA
SDALSRRPQAPDDTDESNAEAYLDKVFAGMELRNALTLFGHRLRTTRSREFFLDTTSLSTASNLSTLGVSSAGEYALTTL
TDSSLLGEDPWTSASVSLQDLDGQFFIGNDFMQRNVPQEHSEVYQLGDEEVECLVTEYRYAYWIAPQRVGESLGSPYGNA
PSQRVSETRVFYPDISSERHVSAGHRFGRPDEENEGQWAEITAYLQDSTFPSHLETQAARRKFISMCARFTLSDGRLWYV
KKGKMPRLVITDQLRRKTLLEEAHNQCGHRGRDATYLRLSERYYWPNMFVNVSDFVRSCNACQFRSKSRPIMSYNPSWTV
AVLRKFHIDTVYMPKGRRGMRYLLQAMEPAIGWPEARAAKRNTSKAWAKFIYTDIICRFSCIPVFVCDNGPEFKGAVKYL
FDKYNIICVLVAPYHPEANGVAERAHPTLVNSILKASGTNASDWPLYLHGALLAMRTTTSRMTGYTPYYLLYGQNPVFGF
DVADRTWSALDWYAVKDTADLLALRLKQITRREVDIGKAMDRVNENRKKAVEAHERRYAGKIQKEMWPVGTLVLVHQTWL
DNQHGHKGALRWAGPYVVRRVVDRFYELTELDGTVMKGAFAADRVKKFFYRYEKQSMMDLPRHRERLAPADADRSSRAVE
AVGALENENTRIFGSLREDLPCWRIGDIAREESVLVDNNELITIMASNLDDLYNMAPGRHPWW
>Gypsy-2_HM#LTR/Gypsy 1-3719   [Hydra magnipapillata]
MALRVRDDLTLDDPDNAEAWIRCFSASARSKKLKDEINGSYEITDLFMAKAGIEAVKKISLMVYPEELENMMFDDIKTVV
MSHLRPQKRLIIAERVRFLALKQQNNENIVSYAQRLREASRFCNFEKLGRDGQSAEDDLIQMRLIDGLQSSDQRVKALEM
IQSGESPKLGACIDFIRQLEQISCFSIQNNIENSIDLPSVNYIDKNKERMIKCKYCGLQHPPRKCPAFGKSCKKCGKLNH
FKNVCKANTKYEKIVEEIENDDASVYSINMNDTNSEISVKINDYNIKMQVDTGSQVTIIPKNFWELMSKPKLQKCYLRLK
QFDGTVIKVLGEFEATLETESKMNIVRIIVADCTKNHGLIGMDVLNINATKLVNSIEPLVHGRLINYKANILLKNGVQPT
YFEARPLPIHIRPLVVDKLNGMIQQGLLQRVPPGGSRWASPLVVVRKTDGDLRICADYKIGVNQKICSDSYPIPNIETVF
HKMAGMKYFAKIDLKGAYHQIEMDKEAQEITTVNTPIGLLRWTCLPFGIKTASAIFQRAIESVVGDIIPNMIIFQDDICV
GAKNAEELKSNLNKILSKLKESGMSINKRKSVNETKSLSFLGYELSEKGVTPDRNLVSKILGISPPNNKKELESFIGLIN
FYGRHIDKYAEKILPLNNLRKKGVTFEWRKEHQQAFELLKRNLCEEPVVKVYDINQDLELTTDASEKAISGILSQNGHPV
LYLSRTLSDAETRYSNIEREALAIVWSAHRARHFLLGRKFKLISDHRPLEFIFDSNKELPKVTSARILRWAIQMMAFDYE
ISYKKGENIPHADALSRLSFLPQDEEKDQETFIHLVESDIVNLEQIIKETENDRVLMDIKTRIRKNNWSRCSVTERPYKS
IRNKLTIEKGIVCNGDLIVPPKTMRKIFIKSIHDDIHCGIMQTRCRLKLEAWWPGYCQDVEEYVKNCEKCAEIKVKKERT
LHTWPSENKPWCRVHMDHAHVQGIGLFLILVDSFSGWPEVIKVNNREATTVKAVLQSVFSRNGVPEVLVSDNAAEFHDTT
LHQWLKKVGCVPYKTPPYHPQSNGAAERMVETVKMGLRAYSPDKGLLCGYLSRMLLSYRTIPHAGRSRSPSEMMGRQLRS
PLTMSFESGTPLWYRQKPDSKPEPASFISQAGLNTAIILRNNSSGTLAHCDQINKRLNEPSILMNNEDSMRYDHTNNEKI
DPCNSDKSDMSELRVTKEEPNQNRRSTRSTRGQKPIRFR
>Gypsy-2_PI_gag#LTR/Gypsy 3-860 Near complete fragment [Phytophthora infestans]
GSTCWSQQPDQKEPMPTIAQLRAEIDRLNQAMADRTKVPSHLPKFTGKRGEDVREWLFQIENACRINNIPIEDTSARLPG
IAGSAMEKPASGWFLHWSSTTRAEEHTWGIFREHVLQHFEASNYQSVLREKLQRLKQTADIETYNGEYSALIFRVEGMSV
LDQVLYYANGLKPRTRSYVKLENPETLSDAMDLAVKYEVTHFVDESRERHTRQDKRKPSTEHAPSHDKSLKGKTFRGKGR
FKAKTSSKRAESRTCFHCKKPGHIKTNCFLWKKEQEKQGNGQPRQ
>Gypsy-2_LG_gag#LTR/Gypsy 100-942 [Lottia gigantea]
MGEEFFQTLSNKLSTLTETISAQGVTNIITPFDGEPTKFRDWVKSIEKYAVLAKIDTAQMKLIAFQTSKGIVSNFIQRYI
ESNPDSDYLQLKQELSIRFSEVIDPLHALALLRKVKQNSNENVQCFGERLLLLATEAYTGPSTVEVERQLIGFFVDGLKE
NYLKLRIMRENPTTLQEAVTSAMTEQNLRKRFHLRTGNNASTHASSSSSPEPMEVDHFRQKRCYNCKKLGHVSKNCRARQ
VNAVDNNYNKQKVKCWNCGAFGHISRNCKKPNNANNRQGN
>Gypsy-1_DGri_gag#LTR/Gypsy 711-2245 via tfasty with Gypsy4_Dpse_gag, 1 frameshift. [Drosophila grimshawi]
MAVRRSAEDLRSATPIEPGLCTICNDTRSDSEFVETPCKHKFHRWCLLEWFLSSESCPVCRQYCSKIMIQIRESTTTDTN
TPSGKDQTSITKASSGAIPKTGVNTRSTSRNKPNTNVRPNPNLNTKRDLPRPKVTSESNIISEERIQQLIANSLDTFKAS
MTAAMTEQLSAAVRSLSLSTQPRETRDEGHLDWENDIVPPRPRLSNSSNSRNNSNQRPGNCYASANVGDGVVEHPERISN
VISNWRIKFSGLANDIPIEDFIYRVNCLTSQCLNGNFHLLVQFAHLLFTGPALSFYWRVHRSAVHLNWFELCNRLQERYK
DQRTDRDIKDAIRRRKQGNNESFDDFLDAILSIADSLREPMLDTDLTIEVRHNLKTELKHELLHVETRDLASLRKECHRH
EDFFRSLNSRSAASSKCEPTITVLHEQIPGVESEEEINATDEICVVRSPEKCICWNCEEQGHRYQDCLKHRRIFCYGCGT
PETYKPNCQKCNPKSENSTKDVRRVPKGDVRY
>Gypsy92_DR#LTR/Gypsy 125-4063 [Danio rerio]
MAACIGQMDAFESTVEDWATYVERVEQYCLANDIGNERKVAVLLSVMGAKTYNLLRSLSAPVKPAEKTFKEIVEVLQTHL
NPKPLTIAERFRFHKRNQHKTESVSEYMAELRRLAEHCQFGDGLSDALRDRLVCGIHSESTQKRLLTERELTLARALEIA
VSMETAAKDALELQRKAISECHINKFTSKKSENSLCFRCGKKSHSPTECWFKEKECRQCHRKGHIQKMCKTKATENKRKS
FGKRHTKMHELNESDTENSDVASLSYIELHALKETDREIIWVSPIIEGVKLKMELDTGSALSIISYKDYKDHFEKFKLKH
TSVILKTYTGEKISPMGKLKVRVKCEKQRRVLNLYVLKKGGVPLFGREWLRSIRLNWQSLKAIQVTPETTLQQDKLEEVL
VKHAQVFQDGIGTLKHIKARLKVESDVQPKFHKARPVPYSVRPKVEAELKRLEDQGILSKVNWTDWATPIVPIVKKSGDV
RICGDFKVTINPVLQADQYPLPLIDDIFASLSGGQRFSKIDLAQAYLQMEMEESSKKYLTINTHKGLFRYNRLVFGVSSA
PAVWQRAMDQVLQGVAGTQCYLDDIIVTGHDDKTHLANLNAVLERLAEYGLRANRSKCEFFKDSIEYCGHRIDKAGLHKS
PDKINAVLNAPRPENVNQLRSFLGLVNYYHRFLPNLSTVIHPLNALLQKTSKWVWSKDCDKAFKMAKQLITSETVLTHYD
PSLPLRVACDASPYGIGAVLSHKMTDGSERPIAFASRSLTVSERKYAQIDREGLSLVWGVKKFNQYLYGKHFTLITDHQP
LVAIFSPNKCVPVMAAARLQRWALFLGGHDYSIEFKGTKHHGNADGLSRLPHENADEGTDETNMFHIVQMEPLPVTSAQI
QNETRRDPVLSKVFELTMKGWPAKGDPQLLDYSNRREQLSVTQGCVMWGTRVIVPHKLQARVLTALHEGHLGVVKMKSLA
RSYVWWPGLDRQIEDLAKACSGCQQIQRQPKAAPLHVWEFPTSPWQRVHIDYAGPIFDKMLLVVVDAYSKWPEVFPIKNA
TSTMTVELLRTLFSRTGLPEQLVSDNGTQFTSEEFQSFVKSNGIRHTTSVPYHPATNGLAERFVQSLKQSLKAMGKEKVS
LQEKIANFLLAYRNAAHATTGQSPATLFMGRSLRTRLDLLKPDLRRHVQAKQCQKNTKQSVLRTLHVGQNVLARDYRQTH
QKWQPGKILSKTGPLTYTVQVGANMVWRRHIDQLLDATSQVDSSQNLTENVETSPCPDEYALITPEFPSTDTGVTESETV
QVSSAQSSSQNAMPQAKRYPERVHKPPDRLNL
>Gypsy85_DR_pol#LTR/Gypsy 1603-6339 [Danio rerio]
RTSGKLESLRCGEGNVRLNESPSLNSDIESVYSFCCENVGRDKTVIFQNTVQLLQNDSLFYTSVLVQDKVHLRGMLDSGS
MATTLSANVVPQLIEAGILSQELVPTSDIVLVGCGGKQTSPEGMCDLKLEVYGISFSVPVLVVSGQTDQLIIGTNVLKPL
IREMKSNEGFWRVLDKPDQLSQNENRQFLQMLSSIERWRGGSIPDRVGTLKTKSTVILQPMSEHLVWGRLPPNQKFSVGS
TVVIEPSMSRCVHRNILIGRVISPLWGDGWLPVKMINPTNSEIVLRKNAKVADVYPCIAMEDFDQVQTVFQNVAACSDSS
CGSLSAKSTLPESKVVNDSRLNALGLDGLSVADCEVSSFWKNKLIELIKKYDDVFSRHSLDCGEARGFCHRIRLVDDRPF
RLPHRRLSPAHYHKLRKTLDEMEQKEIIRKSSSEFASPVVLVWKKNGDLRLCTDFRWLNARTVKDAHPLPHQADVLAALG
GNALFSTMDLTSGYYNIPLHEDDKKFTAFCSPLGLHEYNRLPQGLCNSPATFMRMMLTIFGDQNFMSLLCYLDDLLVFGK
TEEESLQRLEMVFQRLRDHNLKLSPSKCSFLRRSVKFLGHIVSQAGVASDPIKVEAIVNVAEKDLMEVDGITPSVSKIRS
FLGMVIYYQHFIENCSVIAKPLFQLLTGQKKPRKGKGTGRKLVTVRKLTSDDWTDECREAVEELKDSLVKQVLLAHPDFS
KPFILSVDASTRGLGAVLSQVQEGHTVARPIVFASKALNHAQSKYPAHRLEFLAMKWAIYDKFSHWLRGHKFTVWTDNNP
LKYILTKPKLDACEQRWIAKLAPFEFDIQYIPGTKNVVADALSREPFAVPRILHRLTRTPYDVLKHEAETLEVGQVQDTF
HLSCEMTKGKICEQLSESQQHHEVTNLVQSVVGGKVSCGEVSAILGSHSHWEEGAAVRAVTYVQQLRCLENATQSPLAKL
THADLLDKQCQDPVISRVRFFVERGKQPSRKERGSESRETLQTLRQWAKFTTKLGILYRVCKNPTTRTRTYQYVVPAVLR
GLVLNGVHDDAGHQGQHRTLWLARQRFYWNSMEKDVKMYVAQCKRCILSKTPEPEARAPLVSITTTAPLELVCIDFWSAE
DVNNKSVNVLVVTDHFTKLSCAYVCPNQIAKTVARVLWNNFFCVYGFPARIHSDRGANFESSLISEMLKLSGVEKSHTTP
YHPMGNGQAERFNRTLGMMIRSLPPRSKAKWPQLLNSLTFSYNCTRHETTGYPPFFLMFGRTPRLPVDVLFESVLLDGGA
VDVSKYVQSLGRDLREAMSLAQQNARQQQGKQAEHYNLRCKGHSLQPGDRVLLANKGERGKRKLADHWESTVYIVGSKNC
SLNTYGIRHPVTGRVKIVHRNLLMPVIFLPLPAWGDSASPEGNFSSHSVSSQSDVQGCEIADRTSQWIASMDEVVMSSDD
ELTNDAIDNRYLGICDHDMGTQAEHVEGLECLSFSEVVSDCSFRPPDIRSEHSCVAEPQNVAPISRSAIPTVNDNCEAVT
VGEEVLVGSPHHTADFCSLAGQASVQQGTRTRFGRLIKPVSRLLHTMSTQRVCPVIDV
>Gypsy93_DR#LTR/Gypsy 32-3982 [Danio rerio]
MDSAGVPMPIMNWEANNLPESWRKFQQHAELMFSGPLKNKGEDEKCSYLLLWVGEKGRDIHNTWSLSADEAKILKSYYDR
FTAYVEPKANVIFARYKFHEKMQGEREPFEQFVTDLRLLVKDCNYANSNEMVRDRIVFGIYSPKVREKLLNVGSELTLDR
AIDVARSHELAQAQLKTISSSMSASREHVHTVFRNASKGAVAKQGNTKYTKKYSDGQQSRNAGSIQSKGCGFCGNKRHPD
RSLCPARGKVCKICGKLNHFAKVCYSNTEKSIHAIRKENSDLAEECDELFIDSVTQHKYSSEMEQAFVNIKIGPKQQEIR
FKLDTGSSANVIPLYEYVKLDVQHNLQSTSRPLYGYGGERLVVKGKCDLKCKCKDIDMVMAFYVVDTNAPPVIGLKGCID
FGLIKMVLSVTETKTEVPVKEEFADVFKGIGLFPGECTIHLQPHATPVVHPPRRIPLALRSRLKEELESMEKQGVIIKVT
EPTEWVNSMVVAEKPRTGQLRVCLDPRDLNKAIKRPHYSLPTLEDITSRLAGAQYFSVLDARSGYWAIKLTDESSRLTTF
NTVFGRYRFLRLPFGLVSAQDEFQRKIDETYEGLHGVMAIVDDILIHGKTKTEHDRNLRAMLLRSRERGVKLNPEKCIIC
ATEVSYFGHLLTAEGIKPDPAKVAAVRDMEPPKDKGELETVLGMINYLSKFAPGLSDVNAPLRQLLKESSEFVWDTQQDN
AFKKIKELLTCEPGPVLAYFDPLKELSLQVDASKYGLGAVMLQDGRPIAYASKSLSESEINYAQIEKELFAILFGCKRFH
QYIYGRQVIVESDHKPLESIMRKPMASVPPRLQRMILQLQKYNFTIVHKPGKKVVDDHDTGLSEGMDIQVHTVFSSLPVS
DSRLEEIKDHTGKDLQFETLKQVIQRGWPEEKRKCPQSISEFWNHRDELSYMNGIIFKGEKIVVPTRLRSDMLSRIHASH
LGIEKSKQRARDIMFWPGMGKEIENMISTCTICLTYRPSNTKEPMISHRIPDRPWQVVATDLFTWNNEDYLVTVDYYSRY
FELDKLQTTTSASVISKLKAAFARHGIPEAVISDNGPQYSSSEFETFARTWQFKHTTTSPYYPQSNGLAEKSVHTAKMLL
EKAKAGKGDPFLSMLEYRNSPVDGFKSPAQLLMSRRLRSTLPTTNQQLVPKLVSIKDVKTKRVQKQQHQKNYYDRSSRPL
SQLKEGQTVRVQEQGYWKPAVVIKTANTERSYHVRTVDGREYRRNRRHLLDTKESQNNSLEESELHDGAEPCSTPTDSSL
HSDSTHTPKHTDELPEATIYRTRSGRQIKPRVILDL
>Gypsy-1_DBp#LTR/Gypsy 663-4608  [Drosophila bipectinata]
MAENYLKPFLCEAIEKSVLRNEWEKRFRAFTISMEAEQIVSPKMKRTKLLHVGGVQLQAVAFSLPGALVEDDKDGEIDVF
TVLVEKLNAYFSPKQNSTFERRLFRSISPHESENFSKFILRLRQQMYKCSFGQSKVEIEEICLKDKIIDSWAPLELKKKL
LGKEYSLDEVIEACQVEEQISKQSEAMLTKPITSDSINKITARKIRPNLECSRCGRMGHANSDFSCPARAAKCNKCSKIG
HFARQCRTTQYAQPKHENRKRRRNDIRRVEDESADPKRKKECANCFKIYSDEEEELINCQIGGHNIALIIDSGSKFNLIS
QSDWARINKEPTAIFNIRSHSQKQFRGYASEQLLEVIYVFEAPISAVPNVEVIATFFVIKNGRQSLLGRETAIKLNVLRL
GLDVNRVEMTTPFPKWKGVKIKLWIDPQVIPVQQPVRRIPVALEEKVAAKLEESLSRDIIESVTGPSSWISPIVLAFKEN
GDIRLCIDMRRANKAIRRENYPLPTFESFMPKLKDAKYFSRLDLKDAYHQLELDEASREITTFITPKGLFRYKRLMFGIN
SAPEIFQRHLEQLLAPFTNVMNYIDDVIIFGASEEEHDKTVREVCNTFKESGVLLNDQKCIWKTNKLKFLGHIISDEGIE
VDPDKINVIRMFREPLNKEETRSFLGLVTYVGKFIPDLADYTDPLRKLLRKDSKFSWGETERDAFRNLKDRLEKVPNLAY
FNPLNRTRLIADASPVALGAVLLQFSVNADPLIISFASKALSDVERRYSQTEKESLALVWAVEKFYFYLAGLHFELVTDH
KPLEAIFKPTSRPPARIERWLLRLQSFDFKVVYKAGKENISDALSRLCPLSASDSGEKEMDCSILQVIENSIPQSMTISE
IAKHSVKDEEIIDAKACLECDSWKPGSLKLLYPFRFELSAIGPLLLRGNRIVIPQSLRNQVLELAHEGHPGESAMKRRLR
SKVWWPLIDRDAENYVKHCRDCLLVSQCPRPAPMDRNPFPTGPWIWVASDILGPLPNNEFVVVFIDYYSRYMEFKFLRSI
STKSLIEVMKEIFCRLGYPKYLKTDNGRQYISQEFEEYCKTCGIEQVKTPPYWPQANGEVENMNRSLVKRLKIAHSNSKN
YKEEIQKFVLMHNVTPHGTTGVAPTQLMFNRVIRDKVPCIGDIDEEVSDSAERDRDCMLKEKGKEEADKKRGAREAVINV
GDKVLLKNVVFPSKLTPNFKDTEFEVVEKDRNIVKIRAGGRTLTRNVSHLKKIPINASHPDTSGDSSLSSPQPKMTSTQD
HQDVEEGIGHRLRQSPEDLAPLAAPSLKLKLVNKGG
>Gypsy-1_AN_pol#LTR/Gypsy 1135-4860 via tfasty with REALAA_pol, 1 stopcodon.  [Emericella nidulans]
LQQERVGKRITSVQSRVQRGYTAREILLDWQDFNSSRMNTPPFLVEALVNHTYNARTMIDTGCLTYGVISDKFVKIHQIP
TIPIHPKPFKGVTGNIEEINKIIQVQLDIGAHTEKGAYFYVIPDNLGYDLILGLPWLEQHDGRLEAKRGRLYLCTTGVRL
WSTTKRPLPKLDIAQISAATMGGFIQRKRCHGQDIEIFAVSLADIQKALAPKRHIDPRTKLPRQYWKYLRLFEQDKAEEL
PPHRGDGIDHKIELVQEESGKDPEVPWGPLYNMTQEELIVLRKTLSELLQKGFIRVSHSPAAAPVLFVQKPGGGLRFCVD
YRALNAITKKDRYPLPLIHETLNQIGQARWFTKLDVSAAFHKIRIAKGQEWMTAFRTRYGLFEWLVTPFGLANAPSTFQK
YINWTLREYLDEFCSAYIDDVLVYTNGDLRQHRKHVxMVLKKLEEAGLYLDIKKCEFECKETKYLGFIIQAGKGIKMDPE
KVKAIKEWETPTTIKGVRGFLGFANFYRRFIPNFSGIVRPLNNLTKKGTPFLWTKECQDSFDLLKEKFITGPVLATFNPS
YRTVVETDSSGYNTGGVLSQYNKKGELHPCAYFSKRNSPAECNYEIYDKELLAIVRCLEAWDAELRSCGEFQVITDHKNL
EYFFSPRKLTERHVRWSLFLSRFNFKLVYRKGSANQRADALSRRDQDMPDDKDDRVKSRTMQLFTKKHLGKMVVATLQPT
EEQPCEPYEKSDMWKEALKQDKRYNEAIQCLKDGARKFPPHLQLKVGTSECQLDAQDHILFRGRRWVPESEQLRTNIIQA
AHDSILTGHPGREQTYMLVSREYFWPNMSQDIRRFVRNCDICGRTKSWRDQRKGLLKPLPVPDRPWQEVSMDFITDLPES
EGCTNIMVITDRLTKGVILEGMSETDSESVAWALVRVLISKHGIPKAITSDRGSQFTSNTWARICTLTGINRRLSTAYHP
QTDGSTERMNSTVETYLRIYTCYDQKDWNRLLPLAELAINGRTSTATGVSPFYLSHGYNLSPFTPTEEVEQLAEEPTKSP
IQKGEAIVRKVKEALDWAQASMAYSQQNTENQANKHRSPATNYQVGDKVWLSLKNICTDRPSKKLDWKNAKYEVIGLVGS
HAVRLNTPPGIHPVFHVDLLRLASSDPLPSQKNDDTQPPSIMVNGEKEYMVEKILDERPRRYGRGHRLEYLVKWSGYAQP
TWEAATALEEVQALDEWLDRTKQYRLQDGSLNRDAYIKAKAT
>Gypsy-3_BG_gag#LTR/Gypsy 152-1243 [Blumeria graminis]
MSDVSLRQELTDLRKQINELKASNLSHQQPCQVERVIIEKDPPTEGLGLKPTKLPEFDGDRVNYSSWRTAVLDIFRMDWY
AFGYDDSRAFVLIYTTLKGSALKKAGSFYEVGGVHGTRKPEDFIEFLDKLYLDPLRAVRAGRELHAMKMSEGQRWPEFFA
AWTNKLTEARGDLWDDTNKISMLWNALNRDLILALAGNTNLPSNDFNSWIRLVNQVAQQLKMADNWVGQNQPVQTRQRSS
YTDTDLVNNTNSDHRHSRGNTSLTDSSGDTIMGGINTAGISNTNGQRAKWKTHAQLDRLRQERKCFRCERVGCSSRKCTL
LPARNPNKTGININVASLPEIDPSLIDSEGQRLSVKGFLSGSEN
>Gypsy-6_BG_gag#LTR/Gypsy 63-1217 [Blumeria graminis]
MKIRIPSDSESSPTHSSRSSEDEFYNSVEFSDNLTSNNFDYNLMNDSAELNFTQQSLGYQMMRDVSFGRWDGAALTWPTH
HQLLKVQCEVYTPFLVTDIAICMKIYESIPEPQRQRIRSHWMKYGNQAVSYDWKEFLGKCNEVYFDKVGAEKAELKLHSM
KQGESQIFRQFLQEWELQFEYAGGHKWPERLKVNQLRRSISEKLLDKIDSLKMPKENYHAWVEDVAEVASNIEMRDNFFQ
KGESQITQYTTRKKIPQHEAAQSQPNLADKALPFTPASGKDHEGDTAMGGMKVDLNELASLITSLNTKSNGKRNGGKILD
PKPSAPWRSEVEFNILRERNVCLRCEKPGHISRFCRKFGSPKRPVGINNMQELGHFLEQGTSGKD
>Gypsy-5_HM#LTR/Gypsy 34-3669   [Hydra magnipapillata]
MSKILKPTRLDLDHNAPTASKEWKHWKRTFENFIEDCGEDAPDKFRSIINFVSSNVYDYIEECDSYESVIETLENLYIKT
PNEIFARHQLLIRHQTSSESLEDFLQELRKLSKNCNYKDVSAEQYREEQIRDAFISGINSNYIRQRLLENSTLNLQSAFN
QARSLDIAQRNSDSYMQKTSSFSSNLNIXAAIKLPEEPSAALNAMTINPQTKCIYCGNQSHNQRNQTSARKNCPAQNVTC
FKCGKKGHFSKVCLGRPMNITHSVSAAIHKPSLCTVSSGCPLSLSHAAVIVRINDEPLTALIDSCSSDNFISKKIIETLK
IKTLPSKKKILMALTTMESGLVGCCSVNLKVNGLFYNNVQFGVLENLCSDIILGYDFQKLHKNLIFPLGGEKEDLIVTKE
SNLCALQMAKIKIPSLFTSISDKTQPIATKSRRYNNDDRNFIESEILQLLSDGIIEPCFSPWRAQVVVVKDLTKSNKKRL
CIDYSQTVNLYTELDAYPLPRIDDMINGLAKYKVFSTFDLKSAYHQIPIKNSDKKYTAFEANGKLFQFCRIPFGVTNGVS
MFQRSMDKFVEEEKLHDTFPYLDNITIGGYDQAHHDKNCLRFQDASQRWGLTLNESKSVISASSINILGYCVSHNNIKPD
SERLRPLDLLPPPSNILSLRRTLGMFSYYSKWIPSFANKVRPLINVKSFPINSEALEAFQFLKRELHAATLSSIDESLPF
VVECDASDVAVSATLNQNGRPVAFMSRTLGKSEINYPSVEKEAVAIIEAVRKWRHLLLRNQFKLITDQRSVAFMFDNRKK
TKIKNSKIQCWRMELAEFSYTISYRPGSDNIVPDALTRAFCATTQSQTNLSGIHSCLCHPGVTRMLHFVKSKNLPFSTEE
VKRVCSNCQICSELKPKFYRSSNVCELIKSIRPMDRLSIDFKGPLPSNSRNKYLFTVIDEYSRYPFAFPCPDISSTTVVK
CLDQIFSFCGFPTYIHSDRGSSFISNELKSYLTQKGIATSNSTPYHPISNGQVERYNGLIWKNICLALKTHNLDVRNWEI
VLSDALHSLRSLLSTATNCTPHERLFSFPRRSSSGTSLPSWLTPGPIFLRRFVRTNKNDNLVDKVELVDVNPTYANIRYP
DGRESTVSLQDLAPYPAPKEKFNDINENSINESSENVTAKVLDVNKDPSPEIASEIRVRVDEPVTEPFADVLRRSARACK
APVKYDDYILK
>Gypsy-6_DGri_gag#LTR/Gypsy 939-2639  [Drosophila grimshawi]
MVLSHSTEDLTRISNTGKHCCICSEIIVFQGQLLATSCGHYFHRPCFNSQAGKKKVCPICKQSLTRLTSASTENLSPTGP
STSNARRPSTFQSLQTRAQAKRVTNPDQVEMRNSEDINLSQGSTTMQQEAPNMESIQQSMAETIRVAMVEQTRLIATTLA
DQTNRLVQALSEGLRVSPTANLANVTPSHVRPLSEEQNQTLEQSLRLPSTMAPTSGFAQSQTARNGPTTNQAPHFENSLH
SGGDRSHSAAVVTPVNGRLGSDIRPDRISQIMANWKIRFTGKATMSIEDFLYRVEALTKQTLDGNFELTARYASNLFDGS
ASEWYWRYHKSVPEVYWPDLCVALRGQFKDDRTDRNIRTEIEHRKQRSNESFDDFYGIIASLADKLSEPMSEKSLVETLR
ANLLADIQHEILYEPANSVKDLRHLVRTREIFMQSVAKAKQSVVPRRLVNAISETKSEMVSDEETTSNVEYDLSAVDLSC
WNCAGKGHRYQECMAERRVFCYGCGKADTYKPSCINCSASVSKNYHARARRGVYANSWSTKRPIPTNLVVSSLMSIHSTR
LTFQQSC
>Gypsy-7_DAn_gag#LTR/Gypsy 56-853  [Drosophila ananassae]
MANNDTTQDDADVFHDTVTRGSDVVINRVAVKIPPFWTEHPELWLSQIEAQFVLAGITADDTKFNTILASIEAPVLARIA
DAIVNQPGTGKYENLKSCILERFCESEQKKIQKLISETDLGDKRPTQLLNELNALAANKVDETFLKALWLQRLPTQVQAI
LQASDARLADLAKLADKVMEVGDFHHIRTVDAKSAPPSSTVFDERLDRIEQQINALFKNRYRKNSSPTLTDRNSVPTSGL
CWYHSKFGNAAKKCRQPCSFSSEPKN
>Gypsy-6_DSim_gag#LTR/Gypsy 884-2149  [Drosophila simulans]
MAVAAPAQIELSDSNMVQVERQIHAIEVFNGDPNTLYTFISRVDFILALYQTTDERQKLIIFGHIERNISGDVIRTLGVT
NLSSWSELRTQLILNYKPQAPNHQLLEEFRNIQYRGNIRHFLEEAERKRQILISKLELENNTNETILYTRLIQTSIENLI
QKLPSHIYLRIVNCNIPNLRSLINILQEKGLYEAPTSSKDNIKPTSIPNKITTNPQNRQMNNQIRPFVPLQPFYNNVYQP
YHQAHSHMPRFNPNTVPQYQNRPIYPQSNIPMSQVPRPNPAFNRQNIFDQNRFGPSHTNMPTTYPQNRNVQTNNPIKRPR
PSDSGQSKMSTGELRYQEVTSNQPENPYNYNYYYPCYPEYFHPQPYPYQLNYTQESIQFPPEQNYDNSEITEEELPTTND
NEPVDLEQAENFRLVAPDQTNI
>Gypsy-5_CP#LTR/Gypsy 143-4514 via tfasty with Gypsy-6_CP, 1 frameshift and 4 stopcodons. [Carica papaya]
MTRGRPSVERTERPEAQDHPTRAEFTELFRAIQGLTAAVGQNQANPCQHPAPEYRTAERSISHNIAEFRKLNPPHFEGGP
DPLVAEAWILQIEKLFSVLDLTEEQKVPLAAFMLTGEAEHWWRLKKEVLPTPTTWEVFMDAFFDNFFPAYVREKKEEEFQ
DLRQGNLTVAQYAARFVQLSRFAPLMVTPESRKVRKFLKGLRADIYDRVAMLRPSSYAEVLEHAQLAEDLISARHQRIAR
VRTQQQQPQQPRRRLPDPVSSHPDKRTRVALPPALPPPTGQPARPSQPCQHCGRSHGELPCRRINHACYRCGSTQHLIKD
CPQRPKDVARPVAQGRVYHLDEPGALPTPVLIQGMLSIHDTFARALIDTGATHSFISCAFACKLDIRPEPLKEILAVETP
SRGLLEAHCVYKNCKIKASEIEVFVDLILLDFSGFDVILGMDWLEKYRAIIDCESKVVTLRTPKKKKIYFSPxQLNKQEY
GCxSCCVFHSHCLQLFGSFSVELPGLPPPREIEFSIELLPGTQPISKPAYRMSRAELVELENxLSELLGQKFIRPSHSPW
GAPVLFVKKKDGSLRLCIDYRELNRVTIKSKYPLPRIDDLFDQLQGATVFSKIDLRSGYYQLRVKEEDILKTTFRCRYGL
YEFKVMSFGLTNAPAAFMDLMNRVFRHALDQYVIVFIDDILVYSKSPEEHAVHLSEVLGTLRRNQLFAKLSKCSFWLDRV
SFLGHVISSEGVSVDPAKVETVINWNPPTNVAEVRSFLGLAGYYRRFIDGFSKIAAPLTRLTRKGVPFVWDYECGESFME
LKHRLTSAPVLILPDNTGRFQVYCDASHIGLGCVLMQHCRVVAYGSRQLKPHERNYPTHDLELAAIIFALKIWRHYLFGQ
TFEIYTDHKSLKYIFSQRELNMRQRRWMDLLKDYDCKIIYHPGRGNVVADALSRKESAVLAQTMASSWKLVDAMQALRLN
HYGNGAYLAQIRALPDLFMKIWEAQSTDQEITKNLSKFSSDEFPDFRLSDDGLCRFRDRIWVPVAVRTDVLKAAHASKLS
IHPGSTKMYRDLKRQYWWPGMKKDIVDYVSRCLTCQRVKAEHQRPGGLLQGLPIPEWKWEHVTMDFVTGLPRTCSGRNAI
WVIVDRLTKTAHFLPIRTTDSTSKLARLYVDEIVRLHGVPSSIVSDRDPRFTSHFWDSFQEALGSGLYFSTAYHPQTDGQ
SERTIQTLEDMLRACVLDFGDNxYEYLPLCEFAYNNSYHSSIGMAPYEALYGRPCRSPTCWSEVGNQRHLGPDFIQETIE
KVAIIRRNLATAQSRQKSYADNRRRPLEFAVGDQVFLKIFPYKGKMRFGKRGKLSPRYVGPFRIVERIGPVAYRLTLPRE
FAGLHDVFHVSMLKRYHPDPSHIIPHDETQVQADMTYEELPAEILGWTDKVLRNKTIPMVKVQWQHHTPEEATWELESEM
REKFPDLFETNLGDQIF
>Gypsy-3_DPer_pol#LTR/Gypsy 2803-5775  [Drosophila persimilis]
MDTGASISCIGGKFAADLVQNPNQIKPVRAAVRTAHGQSQPIIGKVTTEVGFQGQKKVLKLFVVPSLAQDLYLGIDFWSR
FNLLPAFLANKSSSPEVSSLAFDSTLHVCLSTHQQAQLAETVNLFPSFAKQGLGKTGWLSHDIEVGSGKAIKQRHYAVSP
AVEKLMYVEVDRMLALGVIEESDSAWSSPVVLVRKPGKVRLCIDSRKLNEVTVKNAYPMPLIDGILSRLPRAEFISSIDL
KDAYWQIPLEVSAREKTAFTIPGRPLYQYTVMPFGLCNAPQTMSKLMDKVIPPSLRNEIFIYLDDLLVISESFEQHIQVL
NVLSARLREAGLTINVEKSKFCLKEIKYLGHIIGNGTIQTDVEKVQAIQEFPVPRSVKQVRRFLGLTGWYHKFIKNYAGI
AAPISDTLKSKRKFEWTDEAQNAFDSLKSQMCNAPVLHSPDFTIPFSIHCDASHTGVGGVLMQSDEDGNEVPIAFMSRKL
NQCQRNYSVTEKECLAAVMCVKKFRAYVEGHQFSIITDHASLKWLMSQADLNSRLARWALKLQGFTFKIFHRKGSQNIVP
DALSRVHTEDLSYIGIDSLVDLQSEAFKSTDYQELIAKIQANPDRLPDVKVMDNLLYRRAEHATGEQISDDMCWKLWVPR
ALVTEVLKQGHEHPLASHSGINKTLERVRRFYYWPNLAGDVKAFINNCEVCKCCKHPNRPLRPPMGKAGETFRLFQKLYV
DFLGPYPRSRSGNIGIFVVLDHFSKFPFLKVVKKFTADAVIRFMEEDLFHCFGVPEVIVSDNGVQFKSHKFNDLLAKYQI
RHSYTAAYAPQTNASERVNRSVLAAIKAYIKPDQSNWDEQISFITCALRSSVHAAVKSSPYRVAFGQNMITGGSTYQLLR
NLSMLEDRTVVFDRDDSFELIRKTAAEAKKQQHVRNENIYNLRSREVNFQVGQEVYRRNFDQSSFVKGFNAKLAPTFRKA
RIKKRLGNSYYELEDFQGRFIGKYHAKDIKQ
>Gypsy-3_BG_pol#LTR/Gypsy 1237-5007 [Blumeria graminis]
GKLDAPVPSRAQEPKGSYNKEVRMNTEPFLINALLNDTFMVQALVDNGCLCSGIISDELTERLNLPRIAISPRTLETAEN
SSSIKPTVNYITHIALDLDGFHLPKLWLYVVPSSTHKMILGKKWLEDQDAIIHSKDQRLELRKGNMSVYSVKRWRQNLRQ
VPHPKYSSTKDLMSMSDSVPIGKITIEDISKALRKKPLLSENEARNRLPEKVKDFAQLFADSTGANNLPPLRGNLDHAIN
LRCENGKPLSPPWGPLYSMSREELLVLRKTLTDLLEKGWIRPSSSPAASPVLFARKPNGGLRFCVDYRGLNAITIPDRYP
LPLFKETLRQLSKSRWFTKLDVKSAFHRLRIRKGDEWMTAFRCRLGLFEWLVTPFGLINAPASFQRYINEKLRNHLDVNV
TVYMDDILLYTDGIEDDHWEIVRSVLSKLKNVGLYLDIEKCDFLCKEVKYLGFIVKAGECVAVDPSKVKAILEWEAPVTV
SGVRSFLGFANFYRCFICKFSDIAAPLIRLTRKKSTWKGDEEESTSFNELKRIFATEPVLAQWDPDRETILEADCSGYAM
GGCLSQRDKLGRLRPVAYFSKRLNSAEANYPIHDKEMLAIVTCLKEWKAELNSVAKPFTIWTDHKNLTYFATKRLLNERQ
TRYNDVLQQFRFELKWRAGRASDRPDALSRRDQDKPKDLSDERLAGRIMQLLPSVSLGSAEIIPDSTDGEEIGERVSQAI
LFDDIELQTLWEQATVKDKIWQRACEAVKSGERSFPPDIAHEMKANIAECSVAADGLLRGRENRIWVPDYEPLRTAIMQR
THDSHLSGHPGRDTMVGILLRRWFWPKMRESVRRFVRNCDICGRSTIWREAKAGFLKSLPIPERIGSELTIDFVTDMPMS
KGCTNIMVITDRLSKDIMLFGTSSMEAQKCADLFVDRYYRFFGFPRYLTSDRGSDWLSHFWKNFCRLTGINQRLTMAYHP
QSNASERANQEMYKYLRSFTCYSQDDWMDLLPLAQMALNSRPSSAIGGMSPFFLRNGYNVEPLMEPTPAEGSASRHPGSI
NAQKFVQRLKDAQDFAQAAMASAQQRNELNGNIQRRQPERYRIGDKVWLNLQHIKTPQLSKKLAWQHAKYMVTGVADALT
VELNVPGNIHKRFHVELIKQAGTDPFPSQVRDDAQNPPIVDELGNEEFVVESIIRARTVRRGRGVFRQALVKWASEADPT
WEPIEFIEDTEALDRFEELYGPIENNDGPPEESAGKFVGPAEKNTMQKRRLRQKKKK
>Gypsy-3_DVir_pol#LTR/Gypsy 1730-4774  [Drosophila virilis]
MRFLIDTGASKNYIRPHKRLKGVVPVESPFVVHSIHGSNNIAEKCKLSMLGCDTYFFLLDSLSTFDGIIGLDLLKQVGAV
LCLKKGMLIFGATSEALQYHKCVSVNHTKNKEVEAPPAVKADFLRVLHRNNKAFADSNEALPYNTAVVATIRTTDENVVY
SKLYPYPRGVEDFVVSEVNELLKNGIIRKSKSPYNNPLWVVDKKGTDEVGNRNKRLVIDFRKLNLKTVADKYPMPSITMI
LANLGKAKYFTTLDLKSGYHQITLAEQDREKTAFSINGGKYEFCRLPFGLKNAASIFQRTIDDVLREQIGKSCYVYVDDV
IVFSENESDHVRHVDWVLGSLLNANMRVAHEKSQFFKESVEYLGFIVTKDGAKSDPEKVKAIREYAEPTTVFEVRSFLGL
ASYYRCFIKDFAAIAKPISDILKGENGSISKYRSRKVPIQFNDAQRNAFQKLRNILASEDVILMYPDYKKPFDLTTDASA
YGIGAVLSQNGRPITMISRSLKDREANFATNERELLAIVWALGKLRHFLYGVRDINIFTDHQPLTFSVSESNPNAKIKRW
KARIDETGAKLFYKPGKENHVADALSRQNVNALQGSRDEPESDAATIHSELSLSYTIDSTEKPLNCFRNQVVLEESRFPL
KRNFILFGEKTRHLINFTDTVALIETIKAIINPNVVNAFHCTLPILASFQHELVRAFPTTKFWYCKNFVADVFDVSDRRE
IITREHNRAHRAAQENVKQVMTEYYFPKMTKLANEVVLNCRICTKAKYDRHPKKQELGQTPLPSQTGEMLHIDIFSTDKK
FFLTCVDKFSKFAVVQPIASRTIEDTRPPLLVLMNIFPSAKQVYCDNELAFKSETIRSLLLNNYGVSVINAPPLHSTSNG
QVERFHSTLLEIARCLKLQRGIVDTVDLILQATIEYNNSIHSVVEKKPKDILLDSLPESTHEVRGRIERAQIQQNARVNK
MRRNRVFEVGEKVLVKTNRRLGNKLSPLCIEKKVEADLGTTVLIGGRVVHKDNLR
>Gypsy-4_DVir#LTR/Gypsy 740-4836  [Drosophila virilis]
MNRDEILALRVNELKEKLSALSLVTTGRKQTLQDRLLEYYGLQVDDNESEYDDAGSAHTRQSSPMQIVRTTFTLRDIEDS
LSQFNGSNQPAVEKWIHEFEDNALAVQWNDLQKFIYSKQLLKGAAKLFVRSQHGISDWISLKQALLEEFGTVVSSIDVHR
MLRNRRKRQGEDYIEYLYSLMEIGGPLNLDDSSLIEYFIEGIPDSRSNKSNLYQAKTLQQLKEQIKVYEKIRSSRPQASN
TGRMHNDTEEKKPDLNKERIKKCFKCGDPSHLARECRQPIKCYKCAQPGHKAANCSGSRAVEKKEGQNANTMINKANSSG
KCIFKELSCKNICFSALIDTGCDLCLIRDDILKELGKVELNNEKQCLVGICNSELNTLGSFVTQVEVDGILLDITFHVTS
RDDIQYSAVIGNSVLKQADLIVSENFVEFRPKVKDNANERVIDKTSTITEDTVENKKPDIELLQEFKDVCFFAENQEAEI
DLHHLEKPVADAVQAIIKNYSPEMKKKCPIEMKILLNDERPVFERPRRISHADKSIVDSQIKTWLEEKIIQPSTSEYASP
VVLVPKKDGTKRLCCDYRRLNEKIARDNFPMPLIDDVIERLQGQSVFTTLDLANGFFHVPIEPNSRKFTSFVTSAGQYEF
LFVPFGISNSPAVFSRFIHAILVDLVQDGTVVTYMDDLIIPSKDIDEGIQKLKRVLDRAAEFNLRIKWSKCQFLMKEVDF
LGYVIQGGTIRPSARKTQAVQNFPIPHDRKSLQRFLGLTSYFRRFVEDYALIAKPLSDLLRKDVQFKVDEEQLVAFRQLK
SALVSTPVLRLYNPKAKTEVHTDASMNGYGGVLLQKDSDDQLLHPIQYLSRKTKPSEEKYHSYELEVLAIVEALKKWRVY
LLGIKFKIVTDCNAFALTMKKRGDIPLRVSRWALFLQDFDYSIEHRNGSKMRHVDALSRVSCLMLEDSLQHRLQQAQARD
DWVRAVLTVLDCSTYEDFYVRHGILYKDPIKELIVVPSLMEDEIIRIAHKQGHFSAKRTQEAIEKTFYIPQLSSKVPKIV
KSCVECIISESKSGKKEGFLAPIDKEDKPLGTYHVDHVGPIEQTSKNYNYILVIVDAFSKFVWLYPTKNTTAEGVVDRLR
RQAAVFGNPKRIISDRGAAFVSNLFKEYCETEGIQHLTIATGVPRGNGQVERIHKIVIPMLSKLCRENPCSWYKHIDIVQ
QTINSTPPRSTKVSPFRLLTGVEMKLKRISDLQELLEEAAIEELSNEREEVRKEARQNIAKIQQENRKSFNKHRKKESNY
KINELVAIKRTQYGTGLKLKPKFFGPYKIVKIQNHGRYDVEKVGDHEGPGKTTTVAEYMKKWEPNANLTEESSFGSNEES
GWPSVG
>Gypsy-3_DWil#LTR/Gypsy 375-3599 (has apparent 370 AA internal deletion) [Drosophila willistoni]
MSKLEDFVNVQEALKTEKKSNITLFHKFIYEEEGDRANRQRLRKFEGFDFDCNSDLYKSKVSYVEKNLTNNDLVIICNVL
GLSHDKSNLTSHLFRNLQAVNLLADLDTENDQNEDDDDECERDGDVGNMQDEDEMLSVVSDETNFRTAATNENMRNKTNR
ANSTVVANNIDTQGAVNVNMPPPRFALSFRDVEDSLRPFHGDENLSVEVWIEDFEDMADLMQWDSLQKFVFAKRAIKGLA
KMFILSERGIKNWSTLKESLLNEFKTVINSAELHKQLSERKIKKGESVQKFLLKMKEMASRGNIENSALMQYVIDGINDL
SMNKAILYNANNLKEFKEKIKCYEKMREKSSNQKSESKNVQIKKESVMKYENKESGIKCYNCGQKGHISENCDNKSKGRK
CFGCNNFGHIAKDCPNKKPENSTDVRNTNKISADHMFMCKEVSINNEKCIALLDTGSKYNIVTETIYNRLKKPKLAKVDK
VLYGFGDKKRVVPIGSFTGRLCVSQEQFDLVFLVVSSEFLDHEVILGEDFCKQAEIKINRDGVQIGKYNDETELSSVMRI
KVENDEIDIDSNASKSTKCEVNKLIKNYKPEKLKSTNVEMRIVLKDNSPIYSRPRRFAFAERCIIDDQVDQWLKDEIIEQ
SESEFSSPVVLVKKRDGTPRLCIDYRRINKVIVKDHFPLPLIEDPLDRLQGATVFSTIDLKNGFFHVDVEKESRRFTSFV
THNGQYQFLKVPFGLTNSPGVFQRHVNAIFRDLTRAGTAIPYVDDIIILGKKEGELHPLPKEELPFQTFHIDFLGPLEST
HKQYKHILAVIDGFTKFCWLYPTKTTSTKEVITRLQQQSLIFGNPVQIISDRGSAFTSDEFKEYCKAENIELHAVTTGLP
QANGQVERLNAVIISVLSKISIEDPSKWYKFVGKVQQTINSTYSRSTHSTPFELLIGTKMHTKDDLKLKEIIHDEMIQIF
NDNRDDLRNIAKQQILRMQEENKKTYNLRRRPASIYKVGDLVAIKRTQLGGGLKLKPKYLGPYRITMVKARDTYDVVKDT
LFNDGPRRTTTCAAYMKPWVPCDIDDQDAFEANAY
>Gypsy24_AG#LTR/Gypsy 199-4437 [Anopheles genus]
MANDNRELLEALSGMLVQALKASIGPAVEQVSAELRNTGENIPAPLPKAPSFAMPEYRANEGTSVADYFNRFEWALQLSK
IPEIQYADYARVHMGAELNTSLKFLVAPKKPQEVPYSEMRKILVAHWDQKKNKFVESIKFRTIVQQRDESIAQYVLRLKQ
GSANCEYDNFLDRMLIEQMLHGLTERDICDEIVAKNPSTFQDALDVALALEATRNIARDINTSQPASEATNKLGYEKPNV
KKPYTRRNTTNKQHANSPENTAFNNTHGNQPVACNGCGGPHLRSECRFRSAKCNNCHKKGHIAKVCKSGKSNHHISQQDI
SSPSGSIDQVQRLNRIHNIPSSEKKMIDVKIDGKSLKMELDTGAPCAIVSEATLKSIKPHFTLQTSDRQFSSYTGHRISC
IGRMNVNVTIGATTRKEQLYVVSGAHDSLLGREWISHFADQIDLNRMFSSRTSIHTVSNSTLSPNCETQLTRLLDSYADV
FSESPGKLTGPPAKVHLKENATPVFARARDVPLALRERYAKEIDSKINSGFYEKVEYSEWASPTHVVVKKNGKLRITGNY
KPTVNPLMIIDEHPIPRIESIFNRMKGATLFCHLDVTDAYTHLPIDEQFRHVLTLNTTTHGLIRPTRAVYGAANIPAIWQ
RRMEEVLLGLTNVVSFYDDIIVFAKDFEELLQALTSILSRIKESGLKLNRSKCVFATPSLECLGHRIDREGLHKSTKHIE
AIRDAPRPSSPEQLQLFLGKATYYSAFIPDLSTRAKVLREILSADRFEWTAEAEEAYRDIKNILISPQVLTQYDPTLPLI
LATDASKTGLGAVLSHRLSNGVERPIAYASCTMSATEQRYPVIDKEALAIVWAVKKFFNYLYARKFTLVTDHKPLTQILH
PEKSLPTLCISRMANYADYLAHFNFDVVYRSTNENKNADYCSRIPSPSTQSSVNSLSLRRGGNEDQDDFEDFVLNQIQQL
PIKADQIARETRKDEHLGKILKDLEMGRNLSQIGYKAPEAKYTMVANCLLFEHRVVIPDIFRPAILQDLHAAHIGVVRMK
SLARSYVYWPGIDKDIEQLAKSCHECAQTVSAPPKFNQHHWEYPSNPWERVHVDYAGPVAGAMLLIIVDAYSKWVEVKVT
HSTTTEATIKILDELFASYGAPLTVVTDNGTQFTAAEFTTFLQRSGVKFHKRSAPYHPATNGQAERYVQTVKRALKAMHS
SSTTLQANLNEFLLQYRKVPHSETGEAPAKLFLGRNIRSRLDLVRPQSVQTRTAEKQRVAFEPSYRTFLPGQLVYCLSGS
TRMDKWIRGTVVSRLGDLHYSINCNGNQMKRHVDQMRPTLDDNRTEQPRSVPVPTQTPEVHHHRRHYYGSTDSPQTSSVP
VSSRTVSVSSDSSTSSDSSYDTPTGSPIRASDAPPFVRRSTRLRNPPLRYSP
>Gypsy18_CR_gag#LTR/Gypsy 306-2999 [Chlamydomonas reinhardtii]
MADPVPPGVLAGWRMCLRKYYEVYELPIPDILEDGNARVLRYLASSHDFDLPPDALAAQALLHRLNAERQNFMAATTQRD
DMPANSDGEPGARVGTAEGTGAAYAGPARTGIGGALALTGTGTAATAAVDAAAALATAPPPPTGLGNDAPSAHNPLSPLP
PPHAELQPQLQPPRVVNASLAANPAGGTRYHTAASSPAHSAGSDGQDAEADPERLRQERDAALAELARVQRQQERDRATA
VAAQTRLAEEARRLREAQENGTTAAAAADAPPRPAASAPAGPAPAAGRPGRLLGGIHAAPGALPIPHADRQELQQHHAHV
VPQQTVQHQTAMPAASAHGAQAMSISQDREEGEVHHSRPAVDEPRPATRQRAEPQPRHHAGQPLRLDALNTHINAFCSSD
IGASAMDLSRDVAAPVLMAFLKRHMDDMGVHYEPHIDLLMKGKGGEWAQDPPVVRIANGDDLGFQEVQPRRVRFVDEAGA
LGSNGVDTVGTAAPLPTSAGGTLGVGAPALAGATDGTPPGSTAQMSPVTSPMRMQLHAQGQTHTAPDPAPAPAPAPHYRD
RHDHRDEPRVVIHAFTGVLKGTITNIATWFDVLVMILSRRGIDPVASFLMYLGGQAQQWGLTWFRAWEREHNRQPTVDEL
RHDFLMQWDNPHLHTANAARQRLHNHEVTQTGTVSAYITQFRLIMQDIPDMHMNDRVAHFRAGLQKGLQAKYAFKPGSTV
PWDNVYELMNHILEMTTATNFANGKTQPSVAAADTPASRSPSLPARGGIKKGGRARNHGNGGRAGGGGRHGGGGHGAGGH
AGGGRGGGGGHGGGGHGGYGRGGGGYGRGGGGHDRGGHGGGHGRGGHQHGRGGGGGRGRGNLTAADREAMLAYLHAQREA
DNMQAGLNPNVRSILGM
>Gypsy29_AG#LTR/Gypsy 28-4593 [Anopheles genus]
MSVDDQRVTKDEMLCALQSAEITVPCTATLMQIRALYKEAYPSSQQNGDSNDTMCNAAIAESKEESVTQIMKTDVIKEND
EAAAEIVLLKQKCEILELRNKLAALESQSREYSNTARLLHPEEVKQIIPMFGEGASFLQWIKTVKHSAEVYGWTDQMTLM
YASSQLTGAAKEWYSGFRHSVTSFKEFAEGMGKAFPDTHNEAAIHKKLLHTFKRNDESYAAYIFRVHALGTTGNVSNAAI
ITYIIRGLSRDPMYDNLVAKEYRDVYDLIDHVNRCEMHYQMREPPSSPTRPQPSSRFTSMLKTNTKPANGREEMVRCYNC
SSFGHFSNQCRKPRQSAQLCFLCGSPDHKKQDCPNVAQRMPAAIFAPCDQQSFQHQCPASRLPQSGGNDYSHLNLSMAAA
AENNYGDDNGNQVTGSGARIDPIQEVSVALLNDNELSATQSRVFCLFDSGSPKSFISEQLVPNIKHTPQFSGFCGLGNQQ
LTSLGHVNIRIKFRNINVSHSFMILPKQQTAWPLIAGRDLLKKMNIHLHYLCYRYSQDNLMNLLKENKSTLATHVKARLN
SLGIFKTNSKDEADIWTQSIFQSDQKRYDSVDEHNQTNDSGTEAESILRTFSELCAIDISKEANTLDIGNELSEDQMCLI
ASCVENNYLQPLNETILESQHSMKISVTNDTPIFCKPRRLSFAERNQVRDIVKNLLEKQIIRPSNSPYASAIVLVRKKNG
EVRMCVDYRPLNKITIRDNYPIPLIDTCLEHLSGKRYFTLLDLKSGFHQIKMHEDSISYTAFVTPDGQYEYLKMPFGLKN
APSGFQRFINSVLREFIDEAKLVVYLDDIIIASKTFQDHLETLGAVLKTLRKNGLELRIDKCKFGCSNLDYLGYYVNSKG
IQPSNYHIKAIQNYPVPKTSKEVQRCLGLFSYFRRFVPSFSNIAKPLSNLLKEKVSFQFDEACMNAFNELKTKLINAPVL
AIYDPSRETELHCDASTVGFGSVLLQKQDDGKFHPVAYFSKTASSSESNLHSYELETLSVIYALKRFHAYVHGIPIKIVT
DCNSLVETLKNRNCSAKIARWSLFLENYEYTMQYRPGTAMGHADALSRSKMAGAVDELDLDIQLQIAQGRDPTLVHLRTE
LETKPIPGYTLLDGVIYRQSPESKLQLIVPKELIKNVIRSTHESIGHLGVDKCCSQIAKHYWFSGMKNQVQNFIQNCLKC
ILFSAPPRKNKRNLYNIPKSSVPFDTLHIDHFGPLPSIKSKKKYILVVIDSFTKFTKLYPTTTTNTREVCSVLGQYFNYY
SRPKRIVSDRATCFSSQEFKTFLSDRNIIHVQNAVCSPQANGQVERVNRVIKPMLSKITDSVDHADWCSKLSEVEYALNN
TTHSSTYFAPSVLLFGVEQRGTIINEFKEYLDNKNEPSRNLETIRSEASENIKRSQEINLIQFGKRHNPAVEFAEGDLVV
IRNVDNSANSNKKFIAKFKGPYIVHKQLPNDRYVIRDIDGFQHTQIPYDGILESDKLRHWIAPDADLAPELCDATLHDEN
V
>Gypsy36_DR#LTR/Gypsy 419-5086 [Danio rerio]
MISLEDFVSSPSEEKLNLCSKLQLWDIVDNYKLTGIDKRLRKNELRALIKSALVDCGVLIPVSETADEGMGKFDFSESNL
SFEQRKELLELRQAHEKEMYKQATERERELKEKEVELARLKAEELVKQREIEYEKLKHDQKLELDRQARDYQLQMERLKI
MADGRPLADGVGERNRAGDLVSNLKLLPKFNEKDPEVFFSLFESVADERGWPSADRTIMLQSVLVGRAQEAYTALSVEDR
RNYEKVKSAVLKAFELVPEAYRIRFRTWRKNDRQTHVEVLRELATHFDRWCSTSNVRTFEGLRELILTEQLKNIIPENIA
TYINENKPATASEAAVLADDFVVTHKRWVSDYRMNRGRNYPIDEPRSNIRKPEFKAEKMLHVPSRPIPDSVCRYCFEEGH
WKKECPVLKNKHMRKGSKSQNSSSVLLADSVYPELRFEGDSFFVESCKRPELNPSYIPFVTEGFVSLPGGSENVPVKILR
DTGASESFILNSVLPFSTESGLGKNVLVQGITLTCTAVPLHRVVLRSELVNGEVTMGVRPSLPVGGVDVILGNNLAGERV
WPDASPLPIVITPPVSDDFVAGDSHIFPSCAVTRSKLKLDESVQGDFNATPLKKCNVPGLSLLPTFSSAELIAAQQEDVT
LSPLFDAILSPEEAHSAAAGYFVQDGMLLRKWMSSSEICGGELVVQIVVPTKMRTAVLEVAHGPVGGHLGVKKTYNRILR
HFYWPLLKRDVSKFIKTCHVCQMTGKPNQSLKPAPLCPIPVMGQPFEHLLIDCVGPLPPSRSGSKFLLTVMCQNTRYPAA
FPLRKITTKAVVKALSQFIAIFGIPRIIQSDQGTNFSSKMFAEILKQLRVRHQQSSAYHPQSQGALERFHQSLKSLLRAY
CTELNRDWEEGLPWLLLAAREVIQSSLGFSPNDLVFAHKIRGPLALLKDCLKGEEPPRSLLDYVNGFRRRLVLAGQTARE
NLEKKQEKMKQLFDRNSEVREFSPGDQVLALLPLPASPFRAKFSGPYIVTRRISELNYFISTPDRKKSEQLCHVNLLKPY
YSRDQTDCKTSAVLTVSQTDEIVPEMEEDEAPTDCVLQPRLSNTETLLNLENLMRHLTISQKGELIKLIHEFPELFGDVP
SRTHLIEHDVDVGDATPVRQRFYRAPRVKQQALEAEVQYLLDNNLAKPSCSSWASPCLLVKKSDNSYRFCTDYRKINKIT
KPDAFPLPRVEDCVDQVGAAKFVSKFDLLKGYYQIPLTPRAQEITAFVTSSGLYSYSVMSFGLRNAPATFQRLMNRVVSG
LSGCAVYLDDVVVCSDTWEQHLERVRALFLRLLEAKLTVNLAKCEFAKATVFYLGREVGHGYVRPLKEKVRAIEGFPIPS
TKKDLMRFLGMAGYYRGFCPNFSSVVAPLTNLLKASVPFVWSSGCQQAFNNVKLLLSSNPVLVAPQFDKPFMIQVDASQI
GAGAVLLQTGLDGVDHPVCYFSRKFNSYQVNYSVIEKETLALIWALQYFEVYVGGGSQVVVFSDHNPLIFLHTLKSPSQR
LMRWVLFLQPYNLLIKHIRGTDNVFADCLSRAHSE
>Gypsy35_AG#LTR/Gypsy 262-4356 [Anopheles genus]
MNELEQRILDLCEEFTKTGLAKRCQQKGLPSTGTKEEMARSLVESEEMSIADDSTMDQFHDMEEKSEAAASSAAAKVEPS
IVQQPYSFRDVEEGIEAFCADGSVDFAAWLTDFEDVATMAGWSDEQKYVMCRKKLVGTARSFLLTMRGVSSFGALRKALV
AEFGEKVRPMDIHRQLASRRRKKGESALDFIYSMQRIAKQIDLDEESVCEYIVDGIAESEAQRAALYEARTVRELKEKIA
WQERAAQKQTRAVRSAWHERAGQKENKSLPVQDTIPVKNATKARCLNCGVMGHMVRNCPEQRSGPRCFQCNEFGHRANQC
GQRNKQQPGTSTNLINHVQAELPTKMVQLGGKNIKAVIDTGSEVSIVRQDTLQDLGCVQQRMEQSIQQLRGFGGIIQKPI
GELVTNIGIDDVEYEIGLLVVSPNSMKVPMLVGMNFLRSVCYAITNDGVQIFKKKSDNEESGSDHESAVYKIDCEQIQEL
EVPEKFRDKVQALKSQYEASVVDNYEDNCPIQMKIVLEENASPFRHTPRRLPLMEEEAVENHVGEWLRKGIVRPSTSDFA
SRVVVVKKKDGTSRICIDFRKLNTMVLKDGFPVPLLEEVLEQLQSAKVFTVMDLENGFFHVPIEEASRKYTAFVTKSGLF
EFNRVPFGLCNSPAVFIRFVNYVFQNLLRENVLHIYMDDIVVCGSTAEECLEKMGKVFEVAAQNGLKIKWKKCRFLQTSI
EFLGHHIENGSIWPGQEKVSAVKNFPIPKNIRAVQAFLGLTGFFRKFIKGYSIMAKPLTDLLRKEVDFKMGSIEIEAFND
LKSALVKEPVLKIYDRNAKTEVHTDASIKGFGATMLQWFDGELHPVYFWSKKATDAEAKHHSYVLEAKAIYLALKKFRHY
LLGIKFKLVTDCNAFKQTLKKADVPREVVQWVICLEEFSFEVEHRAGDRLKHVDCLSRYPQLTMMVTCEVTARVKRSQQR
DDSIKAIVEILNTRPYEDYKIKGELLYKCVEGQDLLVIPRDMEKQIISDIHSEGHFGLCKTMHAIKQRYFIPHLERKVKL
ILNSCVKCIIHNKKLGRKEGFLHPIDKGDQPLQTLHLDHVGPMDATGKQYKYVLTVVDGFSKFVWLYPTKTTGAEETLRK
LECWSTIFGYPARIVTDRGSAFTANAFGEYANRHGIQHVVCTTGVPRGNGQAERVNRTMLSVLTKLSSEDPGKWFKVVPS
VQRAINSHIHVAAGKSPFELMFGTKMRTSEVEDLSRLLEEEAYDRFDCERQEMRKGAKNDICNAQNVYKKHYDLSRKPEY
AYVVGDLVAIKRTQFVAGRKLASEFLGPYEVIKINRNGRYKVKRAANCEGPNITTTSCDNMKLWSFAISNDKVFSEDEAE
SENE
>Gypsy13-PTR_gag#LTR/Gypsy 2711-5659 [Populus trichocarpa]
MHLFHFAFIFIHSFIITHMHTPGQNIGPQRVYNTRLRARKMEDEERAYREAHFQEELDSLKVSVACLTSLLEQALRNTSS
EGPSTRPAIFPANQPEEIIGEQAQEPRHNPAFVQSTTPVPTPAVAYAFANESHKTKPFDDINQDKMAALEARIRAIKEVD
LYNPVRAAKICLVPNVVVPKKFQVPEFIKYTGTQCPITHLKSYCNKMAEVVHDDKLLMHFFQDSLSEATLSWYMRLDNTR
IHTWKDLVDAFIKQYKYNMDIALDRTSLSNLEKGDKESIREYAERWRDLAAQVHPPLLEKEMVALFANTLKAPYYEHVMG
SSAQQFTDAVAVAERIEQGVKSGRISAPMEKKGFGVKKREIDHVESSYKSKKGQFQIYNTPSLSSQITNTNFNFPIPTKK
PEPQNHQVKNQAESFPKKNYQRTQEQLPPLPLPLNKMYQRLLSIRQVAPVPLAPLQPPYPSWNKPDLTCVYHAGVAGHNI
HTCNAFKRKLLQLIKVGWITFEEAPNVNMNPLPNHASGSGSVNMLEIEHSKILKVPMDKIYQMMVDARYKEGSEKCCEHH
NIEGHVISQCEGFHQKVIQMMSRGLLRIEKATGEEVSMMEAPNKEVCRVQFVTGKPPKLVLSKPVVAHKGNYNALPHDYG
CSFKSTQHLPVFQVEIRGLTRSGRCFTPEELEKQRKAKGKEGVDVTEEINKPVTEEETNEFLKLMKHSEYSVVEQLKKTP
ARISLLSLILSSEPYRKALQKVLNEAYVPHDINQEAMEHLVGRIQASNYVYFTEDELGPDGTGHNKPLYITVRCKDILIG
KVLINNGSALNVLPRHMLKEMPIDESHMKPSTLMARAYDGSPRQIIGTLEVELYVGPQMFLITLQVMDIHPSYNILLGRP
WIHAAGAVASSLHQCLKYIMNGILITVKAEETVSMIKNIAIPFIEVEDCRDGDIHAFEIVNMEWVPEGAVLRKPKIHEAA
KMAARCFLKNGAPFQYLKLAQSS
>Gypsy10_AG_gag#LTR/Gypsy 1279-2574 [Anopheles genus]
MTKLKGIVRRLELINKTLQQNQGRVRQCALTTYRLQVDEIYSVFRKEVGTNYDKYDETEIKFYNNIIQNLITNIIERINK
ETTNNSDDLNETLKTSKKLTLKTTTHIIISLLAAYKRQKQFVPIAHEAIKTNTSVDANNLPNMDLLKIINTATNAIPTFS
GRDDEARAMLAALEMLKESVDEQHHRIIVQAVESKLKGKGRKIIGTTVNRVDEIINKIKTHLKKTESPEDIASAIHATKQ
KTTPKDFGEEIQALTEELERAYLNEKMDPELASEKTKKIAMTAFGKGLKKELHQGLVLSGTIPSLEAAIKAIDIMDKLSQ
NSQERKTNKWQNGQDNRYNSSNQRQPNNPRNNEQRSNNNWRAQQPQTGRQGNAQNRQSTQGTGYNTQNRQSASPNFLGQR
EPQRAVHCTQVETQNPQVDQPSTSQYGQHTQ
>Gypsy10-NVi#LTR/Gypsy 122-4726 via tfasty with Gypsy-6_NV, 1 stopcodon.  [Nasonia vitripennis]
MPKFGMNDDETNKGEDHFPEICAATTLVNLGNTTGQYSWPTATGTTTTTSQSSRIQSPAQHQIVPTSYGTYLIDGQEYSK
TSTGFVPVSTYNGGITDGQSNIPSNTPPPTIMQVPVVNFAGNIGRLEEFKINSDWNIYHERLEQYFNANFVDDARKVSVL
ITAIGPEVYKILRNLCDPQLPHDKPYTELCEILSKQFSPRISIFQQRKRFYDLQQNSGESISQWYARIKKGAVHCDFGTE
LEGRIKDKFVTGMKEGKILDRICERSHKDALKDIYETALAKEASLAVSANSNQCDVNKLTQHNRGSSSKKNAGEAGRGER
GKQQCATSQSQPRDGAARQQGSSKQQKASCNHCGGVNHVFSKCKYKTYKCNNCSKKGHISKVCKEPKNGEVKYLEDGPDT
ETNYISLHNIVDREDAIPPIQTDVFIEGKRVVMEIDSGAGVTIIPFEIYKKKQLTAKIEKCQKVIKTYDNRPIKPIGQIV
VDIIANDVTVRDAKIIIIKENRQVSLMGRDLMNKLNISLVGPQRPIDVKKIDLNSPDDLKKLLNKYADLFDGQLGKLKGD
KVHLKLSSDAKPVFLKPNSIPFAFKSQVESDLKRLQDQGVIEKIDTNDWGTPLVPVLKEDNTVRTCANYKKTINPWLVDH
RYPIPRIEEIFSALKGGEEFTKLDLEWAYNQIEVDEETSRILAWSTHMGVFKVKRLSFGPKTACSIFQEKIEGVVRDLQG
CKNYFDDLIVTGKDRKKHLENLENVLKALKDHGLKLRKNKCEFMKPRVFYLGHIIDKNGLSKNPENVKAIVEIKRPTNVQ
EIQAFAGMVNYYMKFIPNLSTMLSPIYKLLKKDTPFVWSKECEQSFNEIKRELAADRNLVHYDPDLEVKLTCDASNVGIG
SVLSHVLPNREEKPICFASRTLTKSERNYSVIQKEALAIYWSVKKFYQYLIGRPFILESDHKPLLAIFGEKNGLPxMAAG
RLQRWALFLSGFNYKMKYVKGKNNGGADGLSRLPLRVDDKVNEPNDEYINFLIEEKLPVDYKQIVKEIRTDVVLSKVYVY
SKNGWPDQVADELKPFMYRANEISIENNVLMWGYRVLIPKKLRDRILDELHCTHMGANKMKSIARQYFWWPKLDSDIEQY
SKNCDVCNTLMSNPKKAELIKYDQCKEVLERVHADFLGPIQGKMYFILTDAYSKWPEVYVMSSTNSTNTVNKLRDFCSRF
GLPRKIITDNGPQLVSEEFESFCRSNGIKHPLIAPYHPSSNGAAENAVRSFKNGFKKALLDPKNSKLNEETIISRYLFAY
RNSPHAYTGESPAKLMFGRQLRNCFDLLRENNTIQQNKERQMRNYKGNRSEYFDIDDIVWVLDYRCPTKKVWTKAKIIDC
LGERNYICKTLNEELYWKRHLDQMRRASNFVENDIINMNDRPNNSTESVTNDIVTSSVSFPLNGKHKDSGMNNDIIIPNN
IEDKQVIEKRHEMSSSEFRREESVIPSKIENNVIDRDNVRVKETNGENSIVKTTNEKTNIETVGNAGNKSQKPPITLNVN
ERPKRTIKPPKRLNL
>Gypsy11-PTR#LTR/Gypsy 26-4516 via tfasty with Gypsy1GM, 2 stopcodons. [Populus trichocarpa]
METRTKTNTKFRNEVNETLARHEAGIDQANNNITQANHSIDQMNATLLMVVAELQAFCHAQNSTEREVSPFFQAETSTHQ
NSNPPDFNPSTQPVIQNPSQTDTFHSTQIADRNYTQLKLSFPRFNGLDPTGWLYKAEQYFEFKNVHHQHKVQLASFHLEE
DALQWHRWLSKFRGHLTWAxFSQAMLHRFGPTDYEDPSKALTRLRQSTTVSTYQMEFEKLSQRIDGLPENYLVGCFIAGL
RDEIRLDVKVKQPSTLLDAIGVARLVEERIQLQKRFTPVLRTAGVLPQPKNNTSTLVDLLGPPPITSSSQKSQGGFTRIT
SQEARDRRAKGLCFYCDEKFVRGHRCQRPQLFMIEDTSIGDELNFEEGVDDLPDMEPIPEISFHSISGANHPQTIRVISR
LKNQDIIVLIDGGSTHNFLDQSVVSRLGLSVLRDKTFRVMVANREMIECNGQCLSLTVMIQGCTIQADFYVLPVAACQAV
LGEQWLETLGPIKTDYRELTMSFQQDGITRIFQGLRQSPHRILRDKELVNIEGLGFFLQIAAVEVNETTTYHPNDLSQLL
TEFQPIFEAPTKLPPERPQDHRIPLQPHQGPISVRPYRYPHYQKGKIEKMVKEFLESGLIRPSVSPFSSLVLLVKKADES
WRFYIDYRALNQITIKDKYPIPVIDELLDELHNTRYFSKLDLRSGYHQIRVKEEDILKTAFRTHDGHYEFIVMPFGLTNA
PATFQGLMNDLFRPHLRKFVLVFFDDILVYNHNWGDHLSHLHTVLTILSTNKLFVKQSKCRFGVMQVDYLGHLISHEGVQ
VDPVKTRAVNEWPTPTTIKGVRGFLGLAGYYRKFVSGFGGIAAPLTRLLTKEGFHWSAEATTTFNRLKQALVSPPTLRLP
DFTQTFIVESDACGVGIGAILIQEDHPIAFYSEALKGSALTLSTYEKEMLAIVKAIRKWHTYLLGKPFIVRTDQRSLKYL
LEQRITTPSQARWLPKIMGYDYTIQYKKGKENQGADALSRVTECSCAAISMPVADWWAILQxEVSQDPFYAQLDNPTSPL
HHKLYFQRDGVWYKKGRVYLSPSSSLLPAILKEHHSSPTGGHFGYHKSLSRLKKSFNWPGLRSAVKDFIKHCEVCQRCKY
DNTKPAGLLQPLPIPLQVWTDIFMDFVEGLPVSKGFTVIMVVMDRLSKYAHFVPLKHPFTASSVAKAFIDHIIRLHGMPK
SIVSDRDKIFVISFWKTLFQLHGTNLTMSSSYHPQTDGQTEVVNRTLEQYLRCFTSAQPNKWIEWVSWAEYSYNTSVHTA
TKLSPFEVVYGVPPPSLLSYVPGTTKIQVVDDLLRSRSELLCELRLNLNVARDRMKMQADQSRKDVVFNVGDYVYLKLQP
YRQNSVNFRRSLKQSPQFFGPYRVLARVGSVAYRLELPVGSLIHDVFHVSLLKKHVGTLAPASPVLPPISKDSTLLPQPE
AILDKRIIQKGRYSPRKELLVKWVGAPVEDATWENQWRFSRSYPEFILEDKDFSGRK
>Gypsy12_gag#LTR/Gypsy 802-2217 via tfasty with CIRCE_gag, 2 frameshifts and 6 stopcodons. [Drosophila fruit fly genus]
MMGLDRSPTRKSPSVSNPVCKLCAAEISTQDLYVTTCHHEFYRECIGNHFKKSEICSRCKLTCRPPAEATERVGRETRSK
TKNRRNSRRGSFDISQRCxRKxSxFKRCKCxCSFVSHGAxASSNVVREDADLVQNAITSSMQRIMPTPSPAVVVTASEMS
ADHPNAYERQYLASPNPVPSPRSASSDLFDRPDKVVHILNGWKIKYSGVGVSVDNFIYRVEAVTRQTLNGNFNLLCRNIS
VLFEGKANDFFWRYHKAVNILxERFCTALRLQFRQSRDDGDIEELIRNTKQKPNETFDSFYDTVSELVDQLEQPWTANKL
VRVLRNNLRPEIRHEILNLDVRTVSELREICKRREAFLADVRRCSSYAKDTPFKREISEVCHESEDEVRSTYEAENDIES
FSLVCWNCRIEGHRYQECIAERRVFCYGCGAANTYKPSCRKCSKNFKVGMSKLPVKPKTSNAARNQSTMTDQ
>Gypsy11_AG_gag#LTR/Gypsy 772-2109 [Anopheles genus]
AATTTNVFKKVPYTCNFYGRSCINMQKLLEKIEILDRTYDQVRQLNKCYRLCALTTLRNNTKELYDEIQELLRKHESSIK
DEILTTLVKKSRHLYYEINKCIKIHFERHPDSLNTTLSENQFDITIETKSDKMADIIELIKITTSLISKYDGNEKDLKGV
VSNLNVLKKIVKPENRETIIELVLGRLTGKARIVVGEAPKSIEDIVNKLQDRCSIKVTPEIVVSKMDNTKQTGTIEDFGS
IIEKLTQQLEEAYIAEEITPEVARKKATKSGISALSYGLKDGETKIIMRSSKFETLHEAIEQAVKLELEDRTKKGKNEQT
KILYSNATRNNRGYGNNYQGRNNYNRFTNNNNNRYQTQNPPRFPPARYGHNNNRNNNNYRNNNFNNTRNQHANRQNNSNR
NQYVQSNQRNNSNLQNNRAPIHNTVTAEEQNNFLGQPQASENTQY
>Gypsy48_DR#LTR/Gypsy 19-4408 via tfasty with Gypsy-34_DR, 1 frameshift. [Danio rerio]
MASRKSVHSGKQTRKGLRSQKKTAMEEVAWDTVDEDEEVTSEKGAKSSPTRDPPVATTIEEDVVAMMRTFLTGQQKREEG
LIYELRGLRETLRQQSTHETSQSRRWDLPTPVVTHTRRTEAAHHQTPVPPQPMRPETQMPTLQEGEDVENYLRRYERLAK
SWGWPEVEWACRLVPLLSGKALEAYLAMDEDRADVYEDLREALLEKFDISTESYRQRFRQTVTPAGETPTETYNRLKGLY
RRWVQPERSTKAEIGEVIILEQFLRVLPYEVRTWVKEHEPMDGLGAARLATQYLNAHRGQTHTRATANRGAKHTDKGDEG
TVSFVPNKKLVCFYCQQEGHKASNCPVRKSKLTSLCYVPREGYEKDTVIHAKQHIDVVVNGQTLNALLDTGSNMSLIKQC
YVPATRIDFTHTQNILCVHGDQKNYPTTEITVLIKDQPYLMTVGVVEGLPVDMVLGWDLPIVSELLKKTDGCTDVTSGVS
CPVLTRAQAKVGLEPLPNLDDSLIQGEGKTKKSRRKRCMEKQLGSPIQKEKTEGLHVTDWDIPTNIAQLQADDVTLRPLF
KKVCEGANTIEILGAEKYVVENDVLYVLSDGVKRLVVPECCRPLILHLAHTIPWSGHLAHQKTYYRISTCFFWPSMYTDV
HTYCSTCAVCQKTSSVRRSARAPLHPLPVVTTPFKRIAMDIVGPLEKSSTGNQYILVICDYATRYPEAFPLRSITTAKVI
TALIQLFSRVGFPDEILTDQGTNFTSSLMKLLHEQLGIQSIRTSPYHPQTDGLVERFNQTLKRMLRKFVNDTGKDWDKWL
PFLLYAYREVPQASTGFSPFELLYGWRVQGPLELVRKSWEAPNTAGEGETNIVRFVLQMRDRLDTYREQAQENLEKAQKA
QKLWYDQWSRQREYQPGQKVLLLLPSSTNKLLAKWQGPYDILRKTGPVTYEVLHPDRGKKSQIYHANLLKEWREREPMMK
KAMLTCKVDAPEEEEEDKLDEETPRRFQSVVSVDHLEEKQRVELMDVLHSYPELLRTQPGRTNLVEHSIYLTDPTPIRQR
PYRVPESLITPLRAEIKMMMDMGVIESSTSAWSSPIVLVPKKDGTLRLCLDFRKLNAVSKFDAYPMPRIDELVERIGRAK
YITTLDLCKGYWQVPLEKTSREYTAFRTPVGLYQFTTMPFGLHGAPATFQRLMDLILQDCEDCSAAYLDDVVIYSNTWKD
HLQHLHKILHKIQKAALTLNVTKCEWAKHDTKYLGFQLGNGEVRPQLDKVEAIRNCPRPRTKKEVRSFLGLVGWYRRFIP
QFSEKAVPLTNLTTKMVKNPVPWTEDCEHAFTYLKECLCTFPVLRSPDFAKRFLVQVDASARGIGAVLLQEDRGQKYPVL
YLSRKLLPRETRYATIEKEGLAIKWALESLRYYLLGREFDLETDHRALSWIHSMKDRNARVTRWYLSLQPYKFQIRYKAG
KENIIADYLSRLSHTFNPGEG
>Gypsy68_AG_pol#LTR/Gypsy 2370-5504 [Anopheles genus]
QFSDERGRHAVTDDPRRINCMIGNVPIIFLLDTGASVNTVTAESWWQIRTHAQSSVREWQPHPETTLRSYANSAVLDVEC
SFKAIICAGGTNRTMAKFFVVKGAEISLLSFNTAVSLGLVCIGPGKHYMLRNKTQETTVKDTFPKLNIGAVKFRIDKTVT
PKQIIRYNIPKAFERAVNERLEEMELNGIIEYVDSEDAEISFVSPMVLVPKGNKDFRIVIDYREANKAIIRDPYPMPSLE
RIWTDIPNNDGKILFSKIDLKDAYFHIELHSEVRHLTAFMTMNGLMRFKRLPFGLSCAPEIFQKEMEKVFRNCKNVLIYL
DDILMYGKSLKELKEIENMVREVIKKNGLTINEEKSCYGQEKVNFLGLTLDGEGILPMREKMTAIQNFDRPKDAGELRSF
LGMLTFIGPFIRDFSHKTKPLRDLIKRDKFKWEEMHQNTFEELKKVAMEDLIKRGYFNEKDRIILYTDASPWGLGAILAQ
EKLSTSEMRIIACASKGLTETESRYPQLHREALAIVWAMERFAYYLLGRKFLLRSDSEALKFMIKPAKQKDIGKRIMSRA
EGWFIRLDHYDFDFEHVPGNENIADTASRLCRSKEDYQFGVAKEPHELCLVTACVNQVNETLLALTTEEVGKELEKDVIL
NKVIAWLDKENEWPQEIARYKAFQRELYVENGFLFKQEKMVLPHILRNRALTLAHRSHPGMSTMKNVLRTGLWWPGMDKE
IEAFVRSCPECQLVKTTNTAVPIELTELPENPWDYVSMDISSTTDNVKTLVLTDNYSRFLIAVPLERTDANSIQKALNRI
FLTYYVPKKLKADNGPPFNAVDFKRWLADVWGIKLINSTPLNPTENGLVERGMQGINKIAAIARLEKKCWKQALAEYVAD
YNSWPHHVTKIAPAELMFGRAIRHRLPNPKTDTRQANDDELRDRDKMAKFQRNQREDTRRGARPLSIKPGDTVLVRNQKA
DKTDSSYKKELHEVLKICGAGRVTVKEKKSGKIYDRNVKHIKKFFMRKAEEGLTSGSSSSEEVAGLVKERQARLIKKPKR
LIEY
>Gypsy68_AG_gag#LTR/Gypsy 958-1995 Region between gag and pol riddled with stopcodons. [Anopheles genus]
MAGWTVENNLECALEVRSESKEKDYKGDFLAGSWPLKPFSEELPIHERKAEWARFKGQYERIVMCKGKVNSEMKLIALKV
FAGSYLLNIIEMQERRVKSGEGDVYTETVKGVDDFFNGICDEGKERMKLREMKMEADETFGDWVLRLEAQVKFCGLPEEQ
KTEELVQAVLRRSVPQIAEKLFEMADLFGNELDKLVKHGKHLDFVRMEKREIEQKLAKSTTKEFTDSDNYVAAVTSWRTK
RERYEPYEQQQNKRLSGMHSNGFRNTYNKGATKCSKCDKIHGWGKCGASRSKCFRCGAIGHLAICCRTRLGSNRFPNVVK
KQTEDINQVVIGDPAAERYQKKKNK
>Gypsy71_DR_pol#LTR/Gypsy 1704-6341 [Danio rerio]
MERECAGEQNKTLNQQCEIDWERWYESASSAQYEDSQVVMQNSQKIELFSELFYAPVIINKTFQVKGMLDSGSMACTVSE
DTASRLMEKNILTYDKQLTERVVLVGCGGHQTRPKCMYEVEIEVYGVQCIVPILVVPGQKDDLILGSNVIKYLMHEMKSS
DDYWRVATQSCDSSLAPDASQFLDMMAGLTRWQGAETPNKIGTVKLTQAVTLMAKQEYLVWGRLPKNTPMSPGSTVVVEP
TSSKSMQRNILVARIITPMWGDGYIPMKIMNLSDQPVTLKRNCKLADVSPCVAVEDFTAFQNTSQVDRKEQVLANTESNS
EDLKKKLVEVGLKDLDIDLCQVSNSTKQELVQLLVNYNDIFSKHALDCGEAKGFSHRIRLTDERPFRLPYRRVPPAHYEK
LRQVLTEMENQGIIRKSISEFASPLVMVWKKDGSLRICTDFRWLNARTLKDAHPLPHQSDCLASLGGNVYFSTMDLTSGF
YNIPMHEEDKKFTAFTTPLGLHEYNRMPQGLCNSPASFMRMMLSIFGDLNFTKLLCYLDDLLVFAATEKEALSRLEEVFQ
RLRQNNLKLSPKKCHLLRTSVKFLGHIIGGGGVSVDPEKVDVISRMNKSDLMDNDGVTPSVKRIKSFLGMVFYYQHYIAN
CSAIAKPLFALTAGQKRKGKGRITKQAGTYRKLKSSDWTAECDASFNSLKEKLLNCVILAHPDFSKPFILSIDASLDGLG
AVLAQIPQGEDKARPVAFASKTLSTSQKRYPAHRLEFLALKWSVCEKFSHWLKGNTFTVWTDNNPLTYIMTKPKLDACEQ
RWVAKLAPYTFDIRHIAGSKNVVADVLSRDPFAKTVSNRLLNEFYKCLLSEAEEVCEERIQDAFRLKVQCHRKESESDPK
EILSVANSDSCDANEVNALCEAHNNWEQAAESRAMHLIQSVQQFTPSNLDTLTELSLQELQQRQEQDTSIATIAPFVSRK
RRPSRREKANFNLGALFLSKQWERLTILDGILYRVSKDPTCKQKRYQYVLPQSLKAKALSGIHDLAGHQGQARTLYLARQ
RFFWPKMEQDVKAYVKCCQRCILAKSPEPSARAPLESIRTSSPMELVCLDFWSAEDSKQNSVDVLVVTDHFTKLAHAFPC
ANQTAKQVARKLWDHVFCVYGFPERIHTDQGANFESGLIAELLKLSGVVKSHTTAYHPMGNGGTERFNRTLGAMLRSLPL
KAKHQWPQQIQTLTFAYNATVHETTGFPPFYLMFGRVPRLPVDVMFKQVLRDPVVVDYSTYAKTLLSHLHEAAAIAQQHS
AKEQQKQAQGYNKKVKGTHLNIGDHVLIANKGERGRRKLADKWESTIYKVIKRNPRTHTYVVQDNNGARRVVHRNLLLDI
SFLPAQMEFGGASDLWLEERDEEESVATSKTQDLSVCLESSCSKERTSLWVLDGTEHSMDHSTPSETGSGWFYTDGGQQS
QDDDCSERFFEDESHVTEPRDSQTDCFNLDSDRNTSIVNTVELPNHETEDRDTQNIGNTQRQVTRAGRVVKKVNRLIESM
AQKQFNFKSITNTLGRKSQSLLTLF
>Gypsy83_DR_pol#LTR/Gypsy 1746-6623 [Danio rerio]
ALLLLFFTRSLTECMSTQGVSSAQPEWGKLIDPYMVGGCAGLDDDSHENVACAEAADAVSVDFGELTENVIVQNTNIISS
SSSLFYTPVIVEGKLTLGGMLDSGSMACTMSEKAEAKLLDAGVLTKENRSNFDAVLIGCGGTRVKPKSAYDIEMEVYGCK
IIVPTLVVQGQLDELIIGTNVIKHVLRESKRCPAYWNALSHPCLNDDQESERFLSMLAGMERWKGEEIPDKIGTVRCTSA
VCLEPGREYLVWGKLNKSCVISPGSTVITEPTTSRSAPRHVLVARLVTPLWGDGWVPLKLINLSHQQVLLRRNAKIADLF
ACVALEDLENLVPTCNDDPLFNCTQRVDSRTCLDRREDLVKQLEHAGLGALDINSCEASEDCKNKLRELILQYENIFSRH
HLDCGKAEGFVHRIHVTDTKPFRLPYRRIPPSQYQVLRKVLDEMEEREIIRKSTSEFASPLVLVWKKNGDLRICTDFRWL
NRRTFKDAYPLPHQADCLAALGGNCLFSTLDLTSGFYNMPLHDDDRKYSAFTTPVGLYEYNRLPQGLCNSPGSFMRMMTA
IFGDQNFLSLLCYLDDLLVFAPNEKIALERLEMVFSRLSKHNLKLSPKKCCFLRRSVKFLGHIVDETGISTDPCKVDSIA
RMTYADLMEKDGVTPSQKRVRSFLGLINYYQHFIPKYSSIARPLFDLLSGQMKNSKGGWRRKRSLQSCKLRPEHWTEDHV
RSFEGLKSSLINSVVLAHPKFDQPFILSTDASLDGLGAVLSQVQEGDTMARPIAFASKSLSRSQRNYPAHRLEFLALKWA
VCDKFSHWLKGNKFTVCTDNNPLTHIMTKPKLDCCEQRWVAKLASYDFDIKYIPGSRNLVADALSREPFVHVGHRLLHEA
FDCLRNNMTEMSDVSVQNAFRQSTNSDDQFPRPDSVFHNGMTFSSDEVSAVFRSHNDWETGAQVRAISNLHCVPQVVDND
YGCLPAYSVSELRDKQRSDSILSRVVEYVERCRRPSRRERAHEPFQVVRYLKHWEKFKMVDGVLYRVSKDSFLKTRRFQF
VVPESLKVEVMKGTHDHAGHQGQFRTLSLVRQRFFWLSLDRDVREYVRQCQRCVVSKTAEPSDRAPLVNIQSSRPLQIVC
IDFWSAENSQNKSVDVLVVTDHFTRLAQAFLCRNQSAKEVAKVLWDKFFCIYGFPERIHSDQGANFESNLISELLRVSGV
RKSRTTPYHPMGNGAVERFNRTLGNMIRALPPGEKSDWPRRLQSLTFMYNCTVHETTGFAPFYLMFGRVPRLPIDLMFQS
VLSDSTTTDFSKYVSSLTKDLSEAMKIAQKHASKEQHRHAVLYNRKTKGSDISISDRVLLANRAERGKKKISDRWETAIY
IVIEKFPDTNTYRIRNTTTGQEKVVHRNLLLLVNFLPLTDDSGSLSPSSDPGADVFSSAENSPLHDADLCLDQNETVDGV
PSGNCLDESINVSSDADIGTTAVGEFDSVIPIPADSVSIRDDLSIVEDTGTICSSVTGVGRTLEWVSQLPEDNSDRADLH
SEMSCPASTTASLDVVNTMSDVPLVRPEQPAGSVPLPSQPCNSSGSLRQVQDDFPRVFTRATSRFGRVIRPVNRLLYTMS
RQDVSHNSRGYVTSICKSIVQALRE
>Gypsy79_DR#LTR/Gypsy 36-4083 via tfasty with Gypsy-24_NV, 2 frameshifts. [Danio rerio]
MNSIPAPEGMRMSGDISKNWDIFRAEYEDYELATGLIEKPSEVRAAALRRLLGNECRHVYNHNIVLTEEQTKDPKAILDA
LGAYFKPAKNVIYERYMFGCCKQEVNEPIDSFLTKLRERASTCDYKELKDEMIRDRLVLGITNENTRRRLLRERELTLSQ
SVEICRLAEVTEQRVKTIDSSITDSVNVAVAQRMKGKDGENEQAFRNAFCKYCGGGHTKGKDLCPAYGKTCRSCGVLNHF
AKVCRARQRAYSSGRVNVVTDDARDEQAPYNEGRLFTAEECVDTVKCPGPKWFVNLTINKQKQACQLDTGATCNVMSRII
KEKLDYKCPLQPSTTKLKLYSGATMLSLGRFHTECTVKGTKHMLIFEIVEANQDPLLSGDTCQRLGLMKLTIPRSFTKLL
IAQIYPSPKQQLICSYKDVFNDPVKSVPGEVRFVLDNSVSPVQCAPRNVPVAVKARVKEQLYKHIREGHITSVTEPTPWI
SNMVVIAKPHKLRICIDPKQLNQALQRSHYHMPTLEDILYKLPKARLFMLVDVRDAFLHCRLDNNSSLMTTFWTPWGRMR
WCKLPFGVSVAPEIYQRKQHELLMGLRGIEPIADDILVVGCGDSDAEAESDHDKNLRALMEHCRAVKLRLSEKKLQLKLK
AVHFHGQILSAEGLRIDPEKTKAVLAMPTPQDVKAVQRFIGFVTYLAKFLPRLSDVCEPLRRLLDKGVAWHWLPKHDEAV
QEIIRMVSDTPVLKYYDNDKPVTIQSDASKNGLGCCLLQQGQPVAFASRALTSTEQNYAQIEKECLSIVFACQRFHHFLY
GRESITTETDHKPLTTICKKKITLISAPKRFQSMMLQLQNYNLNVVYKPGPEMYISDTLSRAALHKTVSNEPGLLSQTVN
ATDSYEAALTIVDQALHLNVTDASLRKIVKETKLDGTLQELANIVLPGWPERKEDVPLSVREYWALRDELNIQNGVLFRG
QCVIIPKALRAEMLTRIHATHIGGEACYRLAKETLFWPNMRSEIKDYVTNCAACNEYAHRQQKETMMSHEIPVRPWQIVS
MDLYAYSGKDFLIIVDHYSDYWEIDQLPDLTADTVITRCKVQFARHGQPDKVITDNGPQFDCESFRCFARQWGFAHVTSS
PQHPQSNGKSESAVKIVKSICKRAKLDGSDPWLAILHWRNTTTEGLDSSPAQRLMSRRLRTGLPMANSLLIRNVVEGVSE
KLRWKRRISKFQYDLRAKDLPELNVGEYIRMKPLPGDRMGRWRRGQCLGKVNPRSYVVDVEGTWYRRNRVDLRRAERFDQ
FNHQEAESKENSQGTTGDSEIIITRGENTSDIIDCEPEQAQDQRLIVTNKLSPRGAPIITRSGRQSQLLG
>Gypsy67_DR#LTR/Gypsy 29-3961 [Danio rerio]
MAQIGRLDEYKPENESWSAYIERVELFMIANDVDDTKQVATLLSAVGASTYGLLRNLVQPLKPKDKTFREIVGILQAHFE
PKPLIIAERFRFQHCIQKPHETVSQYVAELKQCASKCDFGASLDEALRDRFVSGIQSEACQRRLLSEDALTFARAFEIAL
SMETADRDTQQLRKAEDAAAVHKVKTTHHQRYACYRCKGSNHKAHECYFKNSKCHQCGKFGHLKKACREKEKPYPNKSKH
ERKSNVTAYMDAEEPELEMFSLLSDAEKQKFKVNFTVNQQDVLMEVDTGAAVSIISHQTYKQSFANVPLERAEVKLKTYT
GESIKVLGQFRATVQYEHQINELALLVVEGNGPNLCGRNWLHKIKLNWKGIYYVNQMQQPTSIQEVLEKYNEVFRDELGT
LKDIKATISVKSDVQPKFFKSRPLPFAMKEQVEKEIERLEKANIISPVTYSEWAAPVVPVVKKDKTIRLCGDYKVTVNQV
ANTETYPLPRIEEVLATLSGGKVFSKIDLAQAYQQVLLDDDSKKYTTINTHKGLYVYNRLAFGISSAPSIFQRIMENLMK
DLKVVVYLDDLLIVGKDEQEHLSIVSQVLQRLQDSGLRVKKSKCEWGQTQIEYLGHVMDGGGVYPTKDKVKAVQDAPAPL
NVKELRAFLGLVNYYGRFVPNQSTVLALLYRLLKEQVIWYWGKKEQSAFEKCKELLTSDKVLVHYNPELPVKLACDASAY
GIGAVLQHTMPNGEERPIAYASRTLSPAEKKYSQIEKEALSIIFGVKKFHQYLWGRSFKLMTDHRPLVTLFGEHKHFPMM
AAARIQRWAIILAAYDYHICYRKAEMHGNADGLSRVPLPEITDVGTEAMSAHINTLLSNHIHEAPINASQIARATRRDLH
MSKVAQYVMEGWPSEVAEELEVFQTKRDELSMEQGCVLWGTRVIIPFKLRKSVLYELHAGHPGIVKMKALARKYVWWPKI
DMDVEKCCKECEICQQEQRVPSQVPLHPWEFPGESWKRLHIDFAGPFLNNMFMIVVDAYSKWLEVFRMSHITSQATITRL
KRLFSAYGLPEQIVTDNATTFTSDEFQTFVRRNGILHTTGAPRHPATNGLAERYVQTFKVGMKKLKNEQMCIEDKISLFL
LRYRTTPNCTTGQSPSDLFLRRHVRTRLDFLKPNIHEVVRKKQYLQKHLHDHKARERSFAVDESVFLRNTAGGDPKWLSG
VVVQQTGPVSYKVCDSSSTTMYKRHGDQLRPRHSSSETDQLSSYSSLEKPSSEKELTDSSSQNSGLTESPAVECESGLPV
SGAASPVGPASPVGPRRSKRTIKLPQRFRD
>Gypsy53_AG_pol#LTR/Gypsy 1003-4107 [Anopheles genus]
RHSADAMGESGEHSSTVTIFRLKITDSTSCMQFLIDTGADVSVVPRGLHSAKVKPTSLQLFAANGTPIKVYGEVLLKVNL
GLRREFLWSFLIADVTSGIIGADFLRNFDLLIDLKRNRLIDNTTHLESNGSLAKSSKYSIKTFNSVSPYADLLAQFPTIT
RLAPPGTISQSTICHRIETTGQPVYARPRRLPPDKLEAARTEFEHLMKLGICRPSSSNWASPLHMVKKADGSWRPCGDYR
ALNAQTVPDRYPLPYLQDFTTILQGKTIFSKVDLQKAFHQVPIHPDDVPKTAITTPFGLFEFSFMTFGLRNAAQTFQRLI
HEVVRGLDFIFPYIDDLFIASSSPDEHREHLRMLFERLKQHNLAINVAKCEFGRDTLDFLGHSVSAEGIRPLLERVEAVK
NFKQPSTVKDLKSFLAMINFYRRFVPNAIQVQIPLLTMIPGNKRNDRTPLTWTDETMAAFNRCKQQLAEAVLLAHPAKSA
ELSLWVDASDIAAGAVLHQIVDGNAQPLGFFSKKFDKAQLRYSTYDRELTAIFLAVRHFKFMLEGRNCHIYTDHKPIIFA
FHQKLDKASDRQARQLDFIGQITTDIRHIVGKENIVADLLSRIAAIQTVPTLDYDALADDQKIDEEIQDIQQGKLKLSLN
LKSFSIPGSKKQLLCDCSGDRIRPFFTRRFRNTALQATHHLSHPGTRATATMMTERFVSPNIRKESIAFARNCLQCQRSK
VTRHTQSPVSRYSAPDSRFAHINIDIVGPFPPSRGNRYCLTIIDRFTRWPEAFPIPDMTATTIADALVSGWVSRFGVPAC
ITSDQGRQFESSLFSELARLLGSSHFRTTAYHPQSNGIIERWHRTLKSAILCHDADHWSEHLPIILLGLRTVYKEDIKAS
PAELVYGTTLRIPSEFFVDVSQSTNEAEFVTKLRRAMRDLRPQETARHGNRSVFMHQDLQTCRNVFVRNDSIRPSLSLPY
EGPFEVMNRTDKFFKLNIRGRTTNVSIDRLKPAYALEEQQTPIITKHAATTPTLTPSAKVTRSGRQVIIPSRYR
>Gypsy51_DR_gag#LTR/Gypsy 379-1743 [Danio rerio]
MAEKGQNTSDLFTPLGGRGRGLYRVEGNTGATPKLLFPSSVSLPEVSPCPDLAQPACSTPSDSNNNVTQQLIDLIGELGS
QIGESIAGRLLASQNVANTTPTTTTQLGQPSLETSKVSFIVRSDIKEPPMFKGDESDKYTVNEWIDVMELYLQKSSCPEA
EKASTIQSHLLGRAKNIIKVGLKSTGSVSVEKIYDMLRHYFSDHPVSLLPLADFYATQPKFKESPVDYWVRLNSAAERAN
SHLQRSGSNMENMNAEVAMMFIRNCPDPELSSVFKCKPMSKWSIEEIQEAIDEHQRENQCRRIPNTVKPHTLHVSTAKAV
PVLEEVKESELTAANATACTPSSHSEAKVSQSNSEALERVLNMLERVLERTSQPAHNSPGSFQTHRARFSSCRVCGDPAH
STRSHCMRERRCLNCLRVGHQRRDCPNVVEATPQPTGTSHSQGNEYARIGEGTM
>Gypsy57_AG#LTR/Gypsy 135-4586 [Anopheles genus]
MFNPEGDAEMDEQRRLSLNGARALNPGFVQPTQSAPMQPAQPPSQNPVASSAQAGLAMNGSETGMFLQMLNLMQQQMQQQ
QQQLSQQQQMMAHMMQQTPHTTAQPQQQAQQAQQYAQQPAAPRNPELIMDALAGSINEFRFEAESGVTFPAWYARYEDLF
VQDASRLEDSAKVRLLIRKLGTAEHARYCNFILPRVPRDLTFDDTVSKLKALFGSAESLLSKRYKCLQIVKAHNEDLMTF
ACRVNRACVDFQFSAMTEEQFKCLMLVCGLREEGDAEIRTRLLARIEDKADLTLEQLSAEAQRITSLKVDSAMIATEGNE
RVFAMRGDYKQRYAQQTQRSFSKQQHPQQADRSAPAAKPPGPCWLCGDHHWIRDCSYRSHKCEDCGKYGHREGHCNTAGR
KKRKNNFYKRSSVATRVVSVNIFSVQQNRKYVTIHIGQKSARLQLDTGSDITIIGRKTWKQLGMPTLSPAQVHAKTATGA
HIQLDGEFEADITINGRTETAIIRVIPSDLQLLGADLIDIFSLAAMPMNQFCNRIESDSAKWEKRFPAVFHGTGLCTKAN
IKLQLKENVRPIFCPKRPVAYAMQATVEKELDRLQALKVITPVDYSEWAAPIVVVRKGNGSIRICGDYSTGLNSALRSYE
YPLPLPDDIFAKLAQSRFFSKIDLSDAFLQVEIDAKYRPLLTINTHRGLYYYNRLPPGIKIAPAAFQQLIDTMLAGLKGT
SGYMDDVIVGGKTEREHDENLLNLFRRIQEFGFTIRADKCAFKMQQIEYLGFIVDSRGLRPNPAKIDIIQKLPTPTNISE
VRSFLGAINYYGKFVSKMRDLRYPLDMLLKDESKFLWTRECDRAFSKFKEILSSDLLLTHYDPNAEIVVSADASAVGLGA
TISHKYADGSIKVVQHASRALTQAETRYSQIDREGLAIIFAVTKFHKMLYGRHFCLQTDHRPLVRIFGSKKGIPVYTANR
LQRFALTLQLYDFSIEYVPTTKFGNADILSRLIREHAKPEPEYIIASAELEEDVSFVATNSINAFPLNFRDVARATNTDA
VLKKVHQYVMEGWPRNLSYGADLARFFNRSEALSSVRGCILLGERVVIPTRLREKCLKQLHEGHPGMQRMKALARSYVYW
PSLDEDISECVKTCHACAVAAKSPPHTKPLSWPATKQPWERIHIDYAGPINGEFYLVIVDANTKWPEVIKANSTSTAGTI
AILRGVFARFGFPITLVSDNGPQFSSTAFTDYCCSKGIQHVTSPPFHPQSNGQAERFVDTFKRSVKKIEEGGASHGEALD
IFLQAYRSTPNAALENHRSPAEAMFNRKIRTAMELLKPPPTTETLPEEHGRGFKSGDCVYAKWYSRNSWKWVPAQVVRII
GNVIYEVKTDDGRMHRRHVNQLRKRDIGSSEQSTNLAARTQLPLDLLIEGPRDVVPVEHPTVISSPLLPSSSDGVRGMTS
SPPLPSPRPVPVQRRRRQQPVQSPRRSNRSRRFPRRLDGYLLQ
>Gypsy60_DR_pol#LTR/Gypsy 1618-6360 [Danio rerio]
LLFTWPCTVSLSAVSVGKLTNLYMEGGCAGLDSNSQNVVDVANAEKIFMSAKESCCSENVVFQNTNAICSSDSLFYTSVM
VDDKVALNGMLDSGSMACTMNESAEQKLLEAGIINDQNGDSPDVLLIGCGGSQVKPKRTVTVQLEIYGCKMLVPTLVVSG
QHDEFIVGTNVIKHIIRCSKQCDLFWRTVSTPLCCNDPMAETYLSMLAGLNRWMGDEIPDKIGTVRCNSAVCLEPGREYL
VWGRLPKHVVVSPGSAVVTEPTSSRSAPRGILVARLVTHLWGDRWVPLKLINTWNKPVMLKRNAKIADLFPGVALEDLDD
GALYSQIQKTQPVDSVSLGSSCIGEKLKSVGLEGLDLDSCDVSDSCRKKLAEMVIQYNDVFSRHHLDCGNATEFVHRIHL
SDTKPFRLPYRRVAPSEYQVLRRVLTEMEEKEIIRKSTSEFASPLVLVWKKNGDLRVCTDFRWLNKRTLKDAHPLPHQAD
CLAALGGNSLFSTMDLTSGFYNMPLHEDDRKYSAFTTPMGLYEYNRLPQGLCNSPGSFMRMMTSIFGDQNFLSLLCYLDD
LIVFGPDEITALDRLEMVFSRLRKHNLKLAPKKCNFLRKSVQFLGHVVDEFGVSTDPSKVDSISKMTGLDLMEADGVTPS
QKRIRSFLGMVNYYQHFIPNYSSVAKPLFDLLKGQKQKIKRGRANKRVCVPRKLSVTDWTSEVQLAFEHLKLAMVQAVVL
AHPDFSRPFVLSTDASSDGIGAVLSQVQPGESRARPIAFASKSLSPSQRNYPAHRLEFLALKWAVCEKFSHWLKGHVFTV
WTDNNPLTHILSKPKLDCCEQRWVAKLAAYNFDIKYIPGSQNVVADALSRVPFARSNIGSRLLSESYDSLLNEVQGLSAG
LVQDAFRWSCGSEGKPNTPCGGLVHVNSNSVAGTCLDKEEVVAVLDSQEAWDEGARLRALSILEHLPQIVSEPESQLIYS
ERDLREKQLSDSVLSRVIFYVERHRKPSRRERAKESVGVVRYLKHWEKFVMKDGILYRISHDQLSKGKRFQYVVPQSLQL
EVLRGIHDQAGHQGQSRTLGLARRRFFWLSLDRDVREHVRHCQRCVVSKTPEPEGRAPLESIVTSRPQQLVCIDFWSAED
HNNRSVDVLVITDHFTRLAQAYQCNDQSARQVARVLWDKYFCIFGFPERIHSDQGACFEGQLISELLRVSGVQKSRTTPY
HPMGNGSVERFNRTLGGMIRALAPEAKRNWPRQLQSLTFLYNCTVHETTGYAPFYLMFGRVPRLPVDLIFRSVLEDHTVT
CYDKYIGSLLKDLEVALSIAQAHAKKEQHRHTVLYNRRVKGQDIEIGDRVLLANKAARGKRKLADKWASTIFLVVDKNVD
THIFKIRDVNTDQVKVVHRNLLLPVNFLPLDKAEDEGSDSVPSLVVADSCEDADNSLTGVIVDRRDPELYVRDKIAQSSE
ISVSTGNNDGLSLYGNVSSASADSHGRTSDWVSGLPKSCSQLGSTVSLISLSVSQENDCSDKLSTIGTTDFAAASPAHSV
ISIPLSDVSNDDDGLSVSDSRTFIVPRSRFGRILKPVNRLLCTMSGQNVVSMQNGRVLTV
>Gypsy59_AG#LTR/Gypsy 93-4541 [Anopheles genus]
MEQADANQMDIFADVDPRRLSQNRASVPGVSMPNFAHREGASVVPPMIIQPPSQPTSTPSQSTSTPSLNNASPAIISSAD
SATMLQMMNLLQQQMTQQQQLLKDFLHARMPSQCAPPTTLQPEQIIDTLSHHISEFQYNKETGITFKSWFSRYLDLFQKD
AARIDDAAKVRLLLRKLGPSEHDRYLSFIMPSRPPDFSLEQTVEKLTCLFDTQESLLSKRFKCLQIMKTRTEDHLSYACR
INKACVEFELKKLNEEEFKCLLYVCGLKDEIDADIRTRLLARIEDKACVTLQQLSSECHRLINLKKDSAMIEAPVPERVL
AVNTKMHRAPRQFQPKRDNPTTPCWSCGGLHWSRDCPYKQHRCTTCSRTGHKEGYCNTIRSRKPGKRPWKQRKTQLRMVT
VNVQSVQQRRRFVSLTMNGTPVRMQLDTASDITVIDHTTWKLIGSPQLAAPSVIARTASGANLSLEGEFPCTVEVNGQAK
QTVIRVSKSRLLLLGADVIDAFALWSVPMDSFCCHVTGTSTTPKQWQERFPTVFQGIGLCKKAGVTLTLKDNCRPVFRPK
RPVAYAMQEPVNLELDRLEKLGIITPVKFSEWAAPVVVVKKANGKIRLCGDYSTGLNEALRPHDYPLPLPEDIFSRLSNC
TMFSKIDLTDAFLQVEIDPQYRPLLTINTHRGLYHYNRLPPGIKVAPAAFQQLMDTMLAGLKGVSGYLDDIIVGGSSEHE
HDTNLAEVLHRLQEYGFTIRADKCAFKQQKITYLGHVIDSHGLRPDPSKIELIKKLPEPKDISGVRSFLGAINYYGKFIP
NMRKLRYPLDNLLKANNSFCWTPECKKSFATFKSLLSSDLLLTHYDPRQKIIVSADASSIGLGATISHVYPGGAMRVIQH
ASRALSEAERHYSQIDREGLAIIFAVKKFHKMIFGRRFVLQTDHRPLLHIFGSKKGIPTVTANRLQRFALTLLAYDFSIE
YVRTDDFGNADLLSRLINTQAKPEEDTVIACIETDIKAMVVSALHNTPLHFADLIRETRKDPLLQKLVHYIREGWPSNAT
YTGELSRFFARKDALSTVDGCILFGERVVIPRVLQQQCLQQIHHGHPGIQRMKALARSYLYWPSLDADITEWVKTCNACQ
AVARSPPHSSPVPWPKAAGPWQRIHVDYAGPLDGDFYLIVVDSFTKWPEVFRTSSTTSAATIGILRGIFARFGVPTTLVS
DNGTQFTSEDFKFFCFQNGIEHITTAPYHPQSNGQAERFVDTFKRTVKKISADGRTMQEALDAFLLSYRSTPSSVLEGLK
SPAEIMFGRPMRTTLDLLRPPLAGGLTDSPVAAKRREFRPSDLVYVKCYSRNGWSWTAGTIVSRIGNVMYTVRTVDRKTI
RSHVNQLRERRERHHHRHRESSESDGLPLDILLDSYHLTPQPTTSTAEPSSASLQHTTSTHTSVSSASHPQTSAVIDPRT
ASNAEPLHPTNSPIPVQAPTREPRRFSRHRRPPSRFDPYRRF
>HERV15_env#LTR/ERV1 6534-8714 [Catarrhini]
MLQMSMPRGRFAMPMCSVSMFLLHTLMLLPFLPILKGEESLERCPHCVHTTWVRNTIVKTLLYHTYYECTGTKLGTCAYN
QTTYSVCDPGNNQLHACYDPKLLPYEFWFEVHIKSEGEKEGELIARTKEAPPSYKGPISLYFDACHAAYVHNPKKTEAVC
NGLTQERLSRSSPKHLYGEPQIGCPDCNIPWSMLTQLQHLYSGRTALLSSMSAKPNCKTRTCNPLNFTILKPELPFWSTG
QTALLRVDRQGAGLGVPLLIVKKTRRTQMRPTPQFRVHKSFCKHFDQSVPELPPSTKNLFAQLAENIAGSLGISSCYVCG
GTNMGDQRPWEAKELMPQDNFTSPNPASEPTASASVWLLKTSIIGKYCIARWGKAFTEAVGETTCLGQQYYDETKNKTLR
RNAQNDSYLPDPNPFSRFSTLSHSWHQLEAPNAWKAPSGLYWVCGAWAYRQLLAKWTGACVLETIKPSLFLIPLKQGELL
GYPVYDENKRTRKSIITKIDTNVKKDADIGDWKDNEWPPERIIKYYGPAIWAQDGSWGYRTPIYMLNRIIRLQAVLEIIT
NETSRALDLLTTQATQMRNATYQNRLALDYLLASEGGVCGKFNLTSCCLEIDDNGQAVMETTARMRKLAHVPVQTWSGWS
PDSLFGGWFSTFGGFKTLIGGFLLILGICLILPCLLPLFIRSIQSTIEAVVTRHTTAQLTALTKYQPLPVKETAQLREEV
ANSGAFY
>HERV4_pol#LTR/ERV1 2591-6055  [Simiiformes]
MGTQIQFLFDTGANYSVLTAYAGKLSSRSTSVMGMEGKPQTRFFTPPLICQFEKQIFQQEFLVVPSCPVPLLGRDIMVKI
GALLQFKHHPVKLLIVKNTDNVPDHINKQVNPLAWYTGKPGKAKTAVPVKIQLKDPSYFPNRKQYPIKXEARKGLAPIVE
VLLTHGLLKPCNSPCNTPILPVLKPSGEYRLVQDLRIINEAVIPVHPLVADPYTLLAQVPGDAKWFSVLDLKDAFFSIPL
APESQYLFAFEWENPNTREKQQYTWTVLPQGFRDSPHFFARALERDLRDLQLENGSILQYVDDLLVCSPTQEASDQNTIK
TLNFLADRGYKVSKKKAQITLQWVQYLGYVLTPGARQISPERVQAICGLGPPHTKQQLRSFWGMAGFCRIWVPNFGLIAK
PLYEATRGPENELMEWTPEMREAFAKLKQALTQAPALGIPDLTKPFSLYVAEKKGIAVGVLAQKLGSEPRPTAYFSKKLD
GVASGWPSCLRAIAATAMLVEEATKITLGQPLEVLTPHQVKSVLEIKGHIWMTGERLTKYQAMLLDNPDVTLKTCNTLNP
ASLLPTGPITDHSCEQVIAHTYVSRPDLKDQPLPDSEDDWFTDGSSFVSNGEHWAGYAVVNHNTIIEAQPLPPGTSAQKA
EIIALTRALMLGQGKKLNIYTDSKYAFLVVHAHATIWKERGLLTSKHSPIKHGPEILQLLEAIHLPKAVAIIHCRGHQRD
LTPIAQGNRKADREAKAAALRVQSQQILALLPFYDSPIEPEYTLQEEQLIKEQGGQKQGSWWYMGSKIYLPQTAQWRVIK
TLHDSFHVGRDATLAMVNRLFTGPNLASVAKQVCQACSLCALNNPGNKMPPLIEPVQRRGTYPGEDWQLDFTHMPACRGY
KFLLVLIDTFTGWVEAYPTRTEKANEVIKFLLKEIIPRFGLPQSLQSDNGPSFISQITQGVAKALGIKYYLHSAWRPQSS
GKVERANQTLKRALAKLCQETSETWVSLLPIALLRIRNTPRAKINISPYEMLYGRPFLTNDLITDPETAGLVKYLVNLGQ
FQQALQKFGTQRLPTPGTNQQPKIRPGDKVLVKTWKEGSPAQQLQPKWKGPFSVVLAMPSVVKVLGLDSWIHLSRIKPAI
PEAPDXEPEVPISHYTCEPVEDLKYLFRRQPKDK
>HERV-Fc1_env#LTR/ERV1 12857-4569 [Homininae]
MKFAFFVLSLFLSCTPVVVDKPPLRLPLTGFFSLTENWSSGQAVSSRLVATAACPPAGCQAPIAFLGLKFSSLGPARKNP
ALCFLYDQSNSKCNTSWVKENVGCPWHWCNIHEALIRTEKGSDPMFYVNTSTGGRDGFNGFNLQISDPWDPRWASGVDGG
LYEHRTFMYPVAKIRIARTLKTTVTGLSDLASSIQSAEKELASQLQPAADQAKSSPFSWLTLISEGAQLLQSTGVQNLSH
CFLCAALGRPPLVAVPLPTPFNYTRNSSTPIPPVPKGQVPLFSDPTRHKFPFCYSTPNASWCNQTRMLTSAPAPPGGYFW
CNSTLTKVLNSTGNHTLCLPVSLIPSLTLYSQDELSHLLAWTEPRPRNKSKRAIFLPLVLGISLASSLVASGLGKGALTH
SIQTSQDLSTRLQLAIEASAESLASLQRQITSVAQVAAQNRRALDLLTAEKGGTCLFLQEECCYYLNESGVVETNLQTLK
KKKIQEELKHSYDPLRPGPSWWFSPVVQQMLPFLIPIIILCIIMCFAPILVQFLRQRIQEITRVAFNQMLLHPYVQLPTS
DLGPLPNDAP
>MDEV_env#LTR/ERV1 gi|3309126|gb|AAC31806.1| envelope glycoprotein [Mus dunni endogenous virus]
MKKPTKTTGLWKPLITLLSFACVAGAPSITLDLGNHNPHAPVQQSWEVLNEKGDVVWVATAVHPPWTWWPDLTPDICKLA
AGSPNWDLPDHTDLNNPPSEQKCVPNGVGSTTGCSGQFYRANLRAAQFYVCPGQGQKGKLQQECRGASDYFCGKWTCETT
GEAYWKPSADWDLITVKRGSGYDKPNQGERNPYKYLDSGCALKNYSPPGPCKGKYCNPLLIKFTEKGKQARLSWLKGNRW
GWRVYIPIRDPGFIFTIRLTVRDLAVTSIGPNKVLTEQAPPVAPAPPRVPAVPAPPTSRPYTVGPSLETTLASPPLLDTE
NRLVSLVQGAFLVLNRTNPNMTQSCWLCYASNPPYYEGIAQTRTYNITSDHSQCLWGENRKLTLTAVSGNGLCLGQVPQD
KWHLCNQTQNIRPNKGGQYLVPPIDTVWACNTGLTPCISMSVFNSSKDFCILVQLIPRLLYHDDSSFLDKFEHRVRWKRE
PITLTLAVLLGLGVAAAGVGTGTAALIQTPRYFEELRTAMDTDLRAIEHSITKLEESLTSLSEVVLQNRRGLDLLFLKEG
GLCAALKEECCFYVDHSGVIKDSMAKLRERLDIRQRERESKQGWFESWFNKSPWLTTLLSTIAGPLIILLLLLTFGPCIL
NKLVAFIRERINAVQVMVLKQQYQVFQEAENSL
>HERVE_A_gag#LTR/ERV1 588-2147 [Catarrhini]
MLKNFKKGFKGDYGVTMTPGKLRTLCEIDWPALEVGWPSEGSLDRSLVSKVWHRVTCKPGHPDQFPYIDSWLQLVLDPPQ
WLRGQAAAVLVAKGQLVKEGSXSTRRGKSAPKVLSDPTPEESWQELVPAVPPPYREEGLPTPEPTAPTPPPDNHTPRPPR
VDKRGSEAAGETPPLAARLRPETGIQMPLREQRYTGVDEDGHMVERRAFVYQPFTSADLLNWKNNTPSYTEKPQALIDLL
QTIIQTHNPTWADCHQLLMYLFNTDERRRVLRVATKWLXEHVPADYQNPQEYIRIQLPGTDPQWDPNEGPDMERLRRYRE
ALIEGLKKGAQKATNVNKVSEVIQGKEESPAQFYERLCEAYRMYTPFDPDSPENQRMINMALVSQSAEDIRRKLQKQAGF
AGMNTSRLLEIANQVFVNRDATSRRESRKEGERQARRNADLLAAAIRGIPPKGEGKGGSGKNTQSNRPRLQRNQCAYCKE
IGHWKDKCPQLKEKQGDSEQKTSDKDEGALFNLAEGLLD
>GALV_env#LTR/ERV1 gi|4027911|gb|AAC96085.1| envelope protein [Gibbon ape leukemia virus]
MVLLPGSMLLTSSLHHLRHQMSPGSWKRLIILLSCVFGGGGTSNPHQPMTLTWQVLSQTGDVVWDTKAVQPPWTWWPTLK
PDICALAAGLESWDIPGADVSSSKRVRPLDSDYTAAYKQITWGAVGCSYPRARTRMASSTFYVCPRDGRTPSEARRCGGL
ESLYCKEWNCETTGTGYWLPESSKDLITVKWDQHSKWDQKFQRCGQTGWCNPLKIDFTDTGKSSRDWIMGKTWGLRFYVH
GHPGVQLTIRLKITSMTAVAVGPDPVLVEQGPPRRALALPPPLPPREAPPPPLPDSNSTTLATSAQTPTVGRTIVTLDTP
PPTTGDRLFNLVQGAFLTLNATNPGATKSCWLCLAMGPPYYEAIASLGEVAYSTSQDRCHWGTQGKLTLTEVSGHGLCIG
KVPFTHQHLCNQTLSINSSEGHQYLLPSNHSWWACSTGLTPCLSTSVFNQSRDFCIQVQLIPRIYYYPEEVLLQAYDDSH
PRPKREAVSLTLAVLLGLGITAGIGTGSTALIKGPIDLQQGLTSLQIAIDADLRALQDSVSKLEDSLTSLSEVVLQNRRG
LDLLFLKEGGLCAALKEECCFYIDHSGAVRDSMKKLKEKLDKRQLERQKNQNWYEGWFNNSPWFTTLLSTIAGPLLLLLL
LLILGPCIINKLVQFINDRISAVKILVLRQKYQALDNEDNL
>ERV-1_AMi-I_3p#LTR/ERV1 6162..7904[Crocodylidae]
MVSPGLCQVVPDNKSDINSCHMVFDSTNHREMQCGSRWLCDNTMTFAGGVACSVLAPLSSIPHPGGHLSWEHHLPWWEGS
RERAVLLNASTVHVRITLTPDEWLLKHYFRNCSKGSQAEEQLLKWAMPDLFQTHPVKRKRDAAGTIWDGLNSAMGVWNSY
KGADNADWLDHLEHGIAYIDRGGRMESQVLIDAIQWTSHAGVSITHVLRGLLQVAHMGFQDLTWDEACDSAQQALNAQLI
GAVKDIKKGLWPEDLDNSSLSITLKSVWQFRRYWTLTWEGCQKGLCHFTAIGPGGGFWTKSRLLTPGVGGGCQWDWVIHR
EVWDVATPEGSRFLVRNPLYWNHGIWIGIGTVWREWPKQPPQLSCAKPLSDGDVIAVGNRVCWDGPANLIWPNHTLWVNN
TEGCVWPIDAEGASIIIQTSKGPITINWPPTIDLNIEVRPTPPKSWITTFWAHQFPGWEQLEKQLKEVEKEWRWGAQLSA
AAAEAKGMYKLAMDIAEPCGMGDVICMIANSPPQVRASAWTVIGIFALXGLXIVAFVCVYAVFAIEANQFSCMFMPMEKQ
KIPLWHHRPSSWLSPRLESKT
>ERV24_MD_pol#LTR/ERV1 2404-5988  [Monodelphis]
RGQGSASPREMVKLKVGGKMVDFLVDTGATYSALRTDPGPYSSQNTFIQGANGHIESYPWTTSHTVDLGTGTVMHSFLVM
PDCPYPLLGRDLLHKLKATISFKGGGTKLYFADTPQTLLLSCPLSEEYLLTAQASRPELSSLLQEFQARVPGVWAESNPP
GLAAHQPPVVVQLLSSATPVRVRQYSISKQAREGISIHIQRLLEAGILVPCQSPWNTPLLPVQKPGTLDYRPVQDLREVN
KRIETIHPTVPNPYTLLSQLPPEHTVYTVLDLKDAFFSIPLAPISQPIFAFEDPREGKGGQLTWSRIPQGFKNSPSLFGE
ALGRDLSAFRESHSDVTLLQYVDDLLLATPSAETCKTAPLHLLELLGTLGYRVSAKKAQLCTTSVTYLGYELEGGVRKLS
CAQIQTILNIPVPRTKRQVREFWGTVGYCRLWIPGFAEIAKPLYAATAGKLENLDWTEDCQRAFNQLKAALVSAPALGLP
NLSKPFHLFVDECRGAAVGVLTQSIGPWRRPVAYLSKKLDPVAAGWPNCLRAVAATALLVREASKLTFGQDVVVTAPHSV
ESLLRSPPERWLSNARITQYQALLLNPPTVTFSKTETLNPATLLPETGKEAVVTHDCLQILDSLTSLRPDLTDVPLPMAA
HTLFVDGSSFVQDGIRYAGAAVVEPPRVIWAQSLGHGTSAQRAELIALTQALRWGAGKSVNIYTDSRYAFATAHVHGALY
QERGFLTAGGKDIKNGPEILALLEAVWLPSHLAIIHCKGHQKGDSPEAVGNRLADETARAVALQPVSPIQALPMGVPRDP
PVLHYSPDDSDRGKRLGATPNSDGWLVLPDGRTLLPEAVGRQLAKRIHDTTHMGGTKLSDMLDRDFFFHNMHRICKDITS
RCETCVRVNQKGGPKEPGGTRLRGLEPGEQWEVDFTEIKPGKYGYRYLLVLVDTFSGWVEAYPTKHETASVVVKKLISEI
IPRFGLPLGIGSDNGPAFVARVTQQLAKTLGINWKLHCAFRPQSSGQVERMNSTLKETLTKLVLESGENWVSLLPFALLR
ARCTPYVQGITPFEILFGRPPPLLPKLGLENLTECDNQYLFSSLKALDKLRKTISQTVQAAHPSPPKCDLPPFTGEPGDL
VWVRKIPAGALEPQWTGPYVIILTTPRAVKVAGKKCWIHVSQLKPVKPRAAAQGAEQWKVTKTSDPLKIKIHRH
>FeLV-A_env#LTR/ERV1 gi|9630709|ref|NP_047256.1| env gene polyprotein [Feline leukemia virus]
MESPTHPKPSKDKTLSWNLAFLVGILFTIDIGMANPSPHQIYNVTWVITNMQTNTQANATSMLGTLTDAYPTLHVDLCDL
VGDTWEPIVLDPTNVKHGARYSSSKYGCKTTDRKKQQQTYPFYVCPGHAPSLGPKGTHCGGAQDGFCAAWGCETTGEAWW
KPSSSWDYITVKRGSSQDNSCEGKCNPLILQFTQKGRQASWDGPKIWGLRLYRTGYDPIALFTVSRQVSAITPPQAMGPN
LVLPDQKPPSRQSQTGSKVATQRLQTTESAPRSVAPTTVGPKRIGTGDRLINLVQGTYLALNATDPNKTKDCWLCLVSRP
PYYEGIAILGNYSNQTNPPPSCLSTPQHKLTISEVSGQGLCIGTVPKTHQALCNETQQGHTGAHYLAAPNGAYWACNTGL
TPCISMAVLNWTSDFCVLIELWPRVTYHQPEYVYTHFAKAVRFRREPISLTVALMLGGLTVGGIAAGVGTGTKALLETAQ
FRQLQMAMHTDIQALEESISALEKSLTSLSEVVLQNRRGLDILFLQEGGLCAALKEECCFYADHTGLVRDNMAKLRERLK
QRQQLFDSQQGWFEGWFNKSPWFTTLISSIMGPLLILLLILLFGPCILNRLVQFVKDRISVVQALILTQQYQQIKQYDPD
RP
>FMLV_env#LTR/ERV1 gi|9626099|ref|NP_040334.1| envelope protein [Friend murine leukemia virus]
MACSTLSKSPKDKIDPRDLLIPLILFLSLKGARSAAPGSSPHQVYNITWEVTNGDRETVWAISGNHPLWTWWPVLTPDLC
MLALSGPPHWGLEYQAPYSSPPGPPCCSGSSGNVAGCARDCNEPLTSLTPRCNTAWNRLKLDQVTHKSSEGFYVCPGSHR
PREAKSCGGPDSFYCASWGCETTGRVYWKPSSSWDYITVDNNLTSNQAVQVCKDNKWCNPLAIRFTNAGKQVTSWTTGHY
WGLRLYVSGQDPGLTFGIRLSYQNLGPRIPIGPNPVLADQLSFPLPNPLPKPAKSPPASSSTPTLISPSPTPTQPPPAGT
GDRLLNLVQGAYQALNLTNPDKTQECWLCLVSGPPYYEGVAVLGTYSNHTSAPANCSVASQHKLTLSEVTGRGLCIGTVP
KTHQALCNTTLKAGKGSYYLVAPTGTMWACNTGLTPCLSATVLNRTTDYCVLVELWPRVTYHPPSYVYSQFEKSHRHKRE
PVSLTLALLLGGLTMGGIAAGVGTGTTALVATQQFQQLHAAVQDDLKEVEKSITNLEKSLTSLSEVVLQNRRGLDLLFLK
EGGLCAALKEECCFYADHTGLVRDSMAKLRERLSQRQKLFESSQGWFEGWFNRSPWFTTLISTIMGPLIILLLILLFGPC
ILNRLVQFVKDRISVVQALVLTQQYHQLKPLEYEPQ
>FeLV_pol#LTR/ERV1 gi|40796124|ref|NP_955577.1| pol gene polyprotein [Feline leukemia virus]
NLGDQESQGQDPPPEPRITLKIGGQPVTFLVDTGAQHSVLTRPDGPLSDRTALVQGATGSKNYRWTTDRRVQLATGKVTH
SFLYVPECPYPLLGRDLLTKLKAQIHFTGEGANVVGPKGLPLQVLTLQLEEEYRLFEPESTQKQEMDIWLKNFPQAWAET
GGMGTAHCQAPVLIQLKATATPISIRQYPMPHEAYQGIKPHIRRMLDQGILKPCQSPWNTPLLPVKKPGTEDYRPVQDLR
EVNKRVEDIHPTVPNPYNLLSTLPPSHPWYTVLDLKDAFFCLRLHSESQLLFAFEWRDPEIGLSGQLTWTRLPQGFKNSP
TLFDEALHSDLADFRVRYPALVLLQYVDDLLLAAATRTECLEGTKALLETLGNKGYRASAKKAQICLQEVTYLGYSLKDG
QRWLTKARKEAILSIPVPKNSRQVREFLGTAGYCRLWIPGFAELAAPLYPLTRPGTLFQWGTEQQLAFEDIKKALLSSPA
LGLPDITKPFELFIDENSGFAKGVLVQKLGPWKRPVAYLSKKLDTVASGWPPCLRMVAAIAILVKDAGKLTLGQPLTILT
SHPVEALVRQPPNKWLSNARMTHYQAMLLDAERVHFGPTVSLNPATLLPLPSGGNHHDCLQILAETHGTRPDLTDQPLPD
ADLTWYTDGSSFIRNGEREAGAAVTTESEVIWAAPLPPGTSAQRAELIALTQALKMAEGKKLTVYTDSRYAFATTHVHGE
IYRRRGLLTSEGKEIKNKNEILALLEALFLPKRLSIIHCPGHQKGDSPQAKGNRLADDTAKKAATETHSSLTVLPTELIE
GPKRPPWEYDDSDLDLVQKLEAHYEPKRGTWEYRGKTIMPEKYAKELISHLHKLTHLSARKMKTLLEREETGFYLPNRDL
HLRQVTESCRACAQINAGKIKFGPDVRARGRRPGTHWEVDFTEIKPGMYGYKYLLVFIDTFSGWAEAYPAKHETAKVVAK
KLLEEIFPRYGIPQVLGSDNGPAFISQVSQSVATLLGINWKLHCAYRPQSSGQVERMNRSIKETLTKLTLETGSKDWVLL
LPLVLYRVRNTPGPHGLTPFEILYGAPPPMAHFFDTDISSFATSPTMQAHLRALQLVQEEIQRPLAAAYREKLETPVVPH
PFKPGDSVWVRRHQTKNLEPRWKGPHIVLLTTPTALKVDGVAAWIHASHVKAAGPTTNQDLSDSPSSDDPSRWKVQRTQN
PLKIRLSRGT
>MdoERV1_pol#LTR/ERV1 1873-5961  [Monodelphis]
MQIELGVPKAQNKTKEQIEEEIQLDNDVTEIKEKIFGTVEQATKKEEGTELATVCNTQTANELIEAHELTTEGSNGEENA
ITENIQISRPPGDNDMESRDDITKENTNDIIEKSTLNPYAEEFQPIVTAQEKANTNIVMPSLSLHDNAIPLQTDDGLQNE
CSEQQEKSVAEEQNWDLNKIEIEAPMVQVCQQNENTEPRVMIKVGNEIYPALIDTGATKSVLKTSPEDSQITSYVQIMGA
TGKKQRVPKLKSKMVTLGPLTTEHTFLLIPECPINLLGRDFLCKIGATIQCDKSGKIFLHLPKDSLKHYPLLFMGQVDDE
QVQNEGTIFEIPSDIPEGLWATHSSDVGILKSATPVKVEVKEGTPPRIPQYKLSKEAIDGINPIIQSLLDQKILIPTISE
YNTPIIPIKKTKRDSEGKVQWRLVQDLRAVNNFVKKSHAVIPSPSKIISEIPSNSRYYTVVDLCSAYFSIPIAKESQKIF
AFTWNGTQLTWGRLPMGFCDSPTAFCQILQQDLQNIRFKESKIVHYVDDILLASPSAKVCYQDSKKLLLELYKKGHKVSK
SKLQWVMPKVEYLGFILEKGTRKISKKRVEDILKLSVPKTKKQLRAFLGVTGFCRQWIPGYSQITKCLTDLTKNTVTEPL
KLMKEHLQALAQLKEAIITAPALGIPDYNKEFHLFVHEARGIASGVLVQTLGPNFRPVAYYSTQLDIIEKGMIPCLRAIA
ATATMIQKSSDLVLGSKLNVYSAHQLESILKKCHLQAFTQQRLSQYEIVLLSNENITLKRCQPLNPASLIPDLPLEGEPI
HNCQETISVVEKPRNDLKDTPLEQPDIEMYTDGSSRIVNGERYTGAAVVTLTETLWYASLPKHVSAQGAELVALLNALQI
GKDKRVNIYTDSQYAFSVIHATAEIWKHRGFLTSAGKEIAYAKLIMQLLEAVQLPKEVAIIHCRSHTGANDRVSLGNHRA
DITAKFGAREGPFHVLNFSIVEQDNLTDAYNEQEIQSWIKNLGAKQIRGIWFSQLGKPILPKNLFYHVCNAIHAQGHCGT
QAVIDSVRRFWTAPGISSYAIRICQKCKICMQFNQGVYKTKGLGGRPLAYTPFECIQIDFINMPKDKGFKYCLVIIDRLT
RWPEVFPSKKNNAAFVVKILLKEIIPRFGIPSKLDSDRGSHFTQSILNEIYKNLGIQATYHTPYHPQSSGQVERLNKDIK
TLIGKFCAETHQKWTNILPLVLFHLRTRPSGDLHISPFEMLYGHAIWQGRTCKPAYIAMIGGDCQLTKYIQALQTRIAEL
HEMGLIQQTVPLDYNLHNIKPGDIVYLKNFNRKLATDIKWTGPHEVLLTTPTAIKVAGKDSWFHCSHVKPEKVQHHCNRH
RR
>RNERV19_gag#LTR/ERV1 676-2225 via tfasty with MDEV_gag, 2 frameshifts.  [Rattus]
MGQSVSTPLSQTLNHWSEVKTRAQNLSVEVRKGXWQTYCXSEWPTFGVGWPPEGTLDQAIISSVKKIVFQXGPGSHPDQV
PYIVVWENXASDPPPWLRSWSRPSPSPSXHILVAQEXRTEKKTTPRIYPDIEGPXXEDEPTPSAPSXPPPPPYNIDKSEG
PXAXTRSRRGASPEXPPSAPTFPLRAYGPPXDPPDLQPLQYWPFSXXDLYNWKTNHDSFSENPSSLTNLIESLMFSHQPX
WDDCQQLLQVLFTTEEKERILXEARKHVPGPDGTXTQMPNLIDAAFPLDRPPWDYNTAEGRERLTXYRRAXVAGLKGAAR
RPTNLAKVREVLQGPTEAPSVFLERLLEAYRRYTPFDPTXEGQQAAVAMSFIGQSYPDIKRKLQRLEGLQDLTVRDLVKE
AEKVYHKRETEEEKRERERERKEREEREDERDRRRDQNLTRILAAVVPEGNRNVGRKTGNLGNPRHRNDWASPDWKRTDR
DQCRYCRNKGHWARDCPNKKEKMRGPKTLALRNEDD
>PTERV1a_gag#LTR/ERV1 841-2385 [Pan troglodytes]
MGNTQSTPLSLLTSNFKEVRARGHDLGIEIRKGKLITLCRSEWPAFDVGWPPEGTFRLAVITRVKSKIFLPGRAGHLDQI
PYILIWQDLVENPPPWLSPFQLASEPCKALVARPLKSKQPTAPPHPVLPDSGDPLFTEPPPYPSGPQAPAPLAELREGAG
GREAAGTHGPAERESNFEGPAGRTRGRTSRTSPPQPPDSTVALPLREIGPPDDTGIPRLQYWPFSTSDLYNWKTQSARFS
DNPKDLLALLDSVMFTHQPTWDDCQQLLRILFTTEERERIQIEARKLVPGDDGQPTANPDLINATFPLTRPAWDYNTAEG
RGRLHLYRQTLMAGLRAAARKPTNLAKVYSILQGKTESPATYLERLMEAFRQYTPIDPEAPGSQAAVVMSFVNQAAPDIK
RKLQKLEDLEGKRIQDLLQIAQRVYNNRDTPEEKQFKATEKMTKVLAAVVQKEHLQPEYTQPRRPPRHDNLSKDQCAYCK
GAGHWVRDCPKKKPRGQGPGPPRSTPVLVTQDED
>RodERV21_env#LTR/ERV1 3248-4792 via tfasty with MPMV_env, 11 stopcodon.  [Rodentia]
MVQPDHPCGGSGDCSPAGCQKEILIPVTPKSISKTPVPYACFLYDQTRDYCxCWPETYGGCPYWSCRRHDAXSGRRSTFY
AEWGIFIFxLRTHGTPGGRRESLVNFTIAFITAAHQARSKYRGYTSHSLNPxVxTRxKKWSNAPQRSLHPxHHPFxTIPI
SLSYHLLFQTLTSAYQLLNNALPGCTLENVGCVSLLGQTHDHHLWPRPLAYxTLSPRCSLIALSQILXPXYLSHISLFGI
ADCFNSSGTHFVGTLDPXDCNNTXTLSTTTQPLCPNVHNAXILCGTQXYHCLPAGWSGTCALVFLFPKLGVVPGEEPLPV
PITGFIAAXHDKxAVQILPFLAVLGITAGVATGTAGLTTSLAIYHRFSSQFIQDLQRVAQTILTLQGQIDSLXAVVLQNR
RGLDLLTAERGGLCLFLGEECCFYVNQSGIVKDKIRQLQTDLRKRXETAxCLWPVXHxQSSMELDTXLLNPFLLLFLILL
IAPCLINFLSRFLQQQIQKISNQTLISCYYRITSP
>TguERV1_pol#LTR/ERV1 4050-7610 [Estrildidae]
GGPEGPTLGDPLVIVKLGNKEKEVEFLVDTGATFSVLNKALIPLTNDYVMVKGATGQSERAYFCKPLKYKLGKQWGIHRF
LYMPNAPSALLGRDLLEQLDAKIIFKNGDISLEVKDQQYVELLSLMLITKELETVSEEEKNFRKIMDQVFPGVWASNIPG
RAKNAVPIQIKLKEGERAVRVKQYPLKKEDREGISPIIENFLQIGLLKECQSDFNTPILPVKKPDGSYRLVQDLRAVNRV
TEDLYPVVANPYTLLTRLTPELTWFTVLDLKDAFFCLPLHEASQKIFAFEWENPKTGRRNQLTWCVLPQGYKNSPTIFGE
QLAKDLESWEPPPGEGQLLQYVDDLLIATQTQETCVDWTVSLLNFLGLQGYRVSQKKAQMVRQTVIYLGYEVSAGQRTLG
QDRKEAICQTPRPQTVKELRTFLGMTGWCRLWIYNYGLLVKPLYALITEESRDLQWTKEATQAFDQLKKALMSAPALGLP
DVSKPFFLFSHEKQGIALGILAQNLGPYRRAVAYLSKQLDTAAKGWPGCLRAVAAVAVNIQEARKFTLGQKMTVLVSHTV
SAVLEAKGGHWLSPQRFLKYQAILVEQDDVEIVVTNIVNPASFLSGSMGEPVIHDCLETIEATYSSRPDLKDIPLEGAET
WFTDGSSYVISGKRHAGYAVTTSREVIESGPLSANTSAQKAEIIALTRALELAKGREINIYTDSRYAFGVVHAHGAIWKE
RGLLNSQGKNIKHSQEILRLLDAVQLPEKVAIMHIKAHQKVSSELEEGNMLADREAKDAAKGEVFEETVEATLIPDGKIS
IEGKPVYNKKDKKLIKAEKANFNQEGWAITEEGRLVVPSYLLWSLVQKEHEKTHWGIDALYNHLKGKIIARKLQGTIIQV
TRQCSLCLRTNPKNIPRPKVGQIGKGCGPGQQWQIDFTELPRKGGYRYLLVLTDTFSGWPEAFSTRTAKAREVTKALLQE
IIPRFGVPATISSDRGPHFISKIVQQISHHLGIDWELHTPYHPQSSGQVEKMNHLIKQQIVRLGQEANLPWPQALPLALL
RIRTKPRTKEKLSPFEILYGRPYAVQEGITPTQVGEETLHKYIVALNKQLREIEKYVAGAQTRELDGPVHDVQPGDYVYV
KSFAEKSLEPQWEGPYLVLLTTFTAIKIKEQKAWIHHSRVKKVPEGVWKVTPGDNELKLKLTCNSE
>SNRV_env#LTR/ERV1 gi|9628893|ref|NP_043923.1| envelope protein [Snakehead retrovirus]
MKLVLLFSLSVLLGTSVGRILEIPETNQTRTVQVRKGQLVQLTCPQLPPPQGTGVLIWGRNKRTGGGALDFNGVLTVPVG
DNENTYQCMWCQNTTSKNAPRQKRSLRNQPTEWHLHMCGPPGDYICMWTNKKPVCTTYHEGQDTYSLGTHRKVLPKVTEA
CAVGQPPQIPGTYVASSKGWTMFNKFEVHSYPANVTQIKTNRTLHDVTLWWCHDNSIWRCTQMGFIHPHQGRRIQLGDGT
RFRDGLYVIVSNHGDHHTVQHYMLGSGYTVPVSTATRVQMQKIGPGEWKIATSMVGLCLDEWEIECTGFCSGPPPCSLSI
TQQQDTVGGSYDSWNGCFVKSIHTPVMALNLWWRRSCKGLPEATGMVKIYYPDQFEIAPWMRPQPRQPKLILPFTVAPKY
RRQRRGLNPSTTPDYYTNEDYSGSGGWEINDEWEYIPPTVKPTTPSVEFIQKVTTPRQDKLTTVLSRNKRGVNIASSGNS
WKAEIDKIRKQKWQKCYFSGKLRIKGTDYEEIDTCPKPLIGPLSGFIPTGVTKTLKTGVTWTTAVVKIDLQQWVDILNST
CKDTLIGKHWIKVIQRLLREYQKTGVTFNLPQVQSLPNWETKNKDNPGHHIPKSRRKRIRRGLGEALGLGNFADNRWKDL
QIAGLGVEQQKLMGLTREATFEAWNALKGISNELIKWEEDMVATLRQLLLQIKGTNTTLCSAMGPLMATNIQQIMFALQH
GNLPEMSYSNPVLKEIAKQYNGQMLGVPVETTGNNLGIMLSLPTGGENIGRAVAVYDMGVRHNRTLYLDPNARWIHNHTE
KSNPKGWVTIVDLSKCVETTGTIYCNEHGFRDRKFTKGPSELVRHLAGNTWCLNSGTWSSLKNETLYVSGRNCSFSLTSR
RRPVCFHLNSTAQWRGHVLPFVGNSQEAPNTEIWEGLIEEAIREHNKVQDILTKLEQQHQNWKQNTDNALQNMKDAIDSM
DNNMLTFRYEYTQYGLFIVCLLAFLFAVIFGWLCGVTVRLREVFTILSVKIHALKSQAHQLAMLRGLRDPETGEQDRQAP
AYREPPTCQEWARRRGGRPPIVTFLIDRETGERHDGQIFQPIRNRSNQVHRPQPPRPTAPNPDNQRPIREPRPGEPEHGD
FLQGASWMWQ
>PRIMA41_pol#LTR/ERV1 2703-6250 via tfasty with CarERV2_pol, 5 frameshifts and 12 stopcodons.  [Primates]
GQLAISPEKPRVTLDVAGKNINFLLDTRAAYSVLTHYNGTLSPQNCMVMGIDGQAHRCHFTYPLSCSSGTLVFSYAFSYH
AxMPHPLLGRDLLTQLQTVVSFGNHKADKKLLLLLSCDKGGKSIGTYPSLPIEVTSQINPVVWDIEVPDKALNVPLVCIx
LKPDALYSWKRQDPLKPEAxRGIHPLRTKFLQFGLLRPFKFPCNTLILPIKKPNGDYIFVQDLxAVNSAVIPKHPVVLNP
YMLLAQVLGDASWFTVLDLRDFFFFCIxVYPDSKFIFAFGWTDPDSHLVSQLTWMVFPQECRDSPHLFGNTLTRELKMLK
LNRGTSIWYVNDLLVASPTKRGSNKNAIKLLNFLDTNGYRVSLHKAHVSTQEVKYLRYVLTPGTWAIAPEKKEVILGILE
PQTRKQLWDFLRMGRFCSxxVPGFGHMAKSLCKALKGAHVIFLNAVSIVKHTFNTLKEKLGTTPALGIPNLDKPFPLFGx
KTRNALEVLVQKLGGIPRPVAYFSKxLDHVALGWPRCLRAVAAMALLVYEANKLALGQHLEVLTPHQVQGVLEAKRHQRM
TGGHVYKYQALLLNTPDITLKVCQTLNPATYLPEPTGTLDHSCIQVMEQVYSSCPDLKDEPLDNPEVEWFTDGSSFVHQG
NGKAGYAVVSQHEVIESQALPASTSAQKAELIALIRALQLGKDLRINISTDSKYAFLVLHAHAAIWKEWGLLTAKGSPIK
HHLEIRNLLDAVLLPKEVAIIHCRGHLKGNSSVTKGNSFADAAAKATALKDPVGLVGMLVPSATVITEPRYTKEEQEWAK
GQGLIQDPSGWLINDNKLLTPGANQWKIVKHLHDSTHLGRDSLFQLMSQLFIGKGLLKTVKQVTQACELCARNNPNNQSL
PPPLVRPVQHRGTYPGEDWQIDYTQMPPCKVFKYLLVFVDTFSGWIEAFPTWSEKAIEVSKLLLKEIIPRFGLPKSLQSD
NGPSFTATITQNISSALGIQYRLHSAWRPQSSGKVERANQTLKRTLAKLCQETSETWLSLLPVALLRVxMAPKGNLQLSP
FEIMYGRPFLTTDFLIDIDTFKLQNYVINLGQVQNALLEYGNQRLPSPTKEENLVTTQPGDWVLLKTWKEGSPADQLSPK
WKGSYQVLLSTPTAVKLLGINSWVHLSxIKPVSYEVPQASGTQETDPVYSCEPISDLxLLFRR
>MuLV_env#LTR/ERV1 5574-7574  [Mus mouse genus]
RHLCVDTRRSRKGGDNSSGRSSMEGPAFSKPLKDKINPWGPLIVIGILVRAGASVQRDSPHQVFNVTWRVTNLMTGQNSN
ATSLLGTMTDTFPKLYFDLCDLVGDHWDDPEPDIGDGCRSPGGRKRTRLYDFYVCPGHTVPIGCGGPGEGYCGKWGCETT
GQAYWKPSSSWDLISLKRGNTPKDQGPCYDSSVSSGVQGATPGGRCNPLVLEFTDAGKKASWDAPKVWGLRLYRSTGADP
VTRFSLTRQVLNVGPRVPIGPNPVITEQLPPSQPVQIMLPRPPHPPPSGAASMVPGAPPPSQQPGTGDRLLNLVKGAYQA
LNLTSPDRTQGCWLCLVSGPPYYEGVAVLGTYSNHTSAPANCSVASQHKLTLSEVTGQGLCVGAVPKTHQALCNTTQKAS
DGSYYLAAPAGTIWACNTGLTPCLSTTVLNLTTDYCVLVELWPKVTYHSPGYVYDQFERKTKYKREPVSLTLALLLGGLT
MGGIAAGVGTGTTALVATKQFEQLQAAIHTDLGALEKSVSALEKSLTSLSEVVLQNRRGLDLLFLKEGGLCAALKEECCF
YADHTGVVRDSMAKLRERLNQRQKLFESGQGWFEGLFNRSPWFTTLISTIMGPLIVLLLILLLGPCILNRLVQFVKDRIS
VVQALVLTQQYHQLKSIDPEEVESRE
>MER52_gag#LTR/ERV1 1437-2909   [Eutheria]
MGNQPSSACTPLECILNHWDPFDPQTLEREXNAFFLLCPLFQMGNQSSSACTPLECILNHWDSFDPQTLEKKRLIFLCTK
VWPDYVLQEGEAWPQEGSINFNTILQLDLFCKREGKWSEVPYVQAFFALQGNLDLCQHCRIDSALLVAISGEAARGNPRE
XGKQTPEVPPAGESTPSXPPYPGFLSSLPHPRNPHFRQVPVSLLPLQQMPGEYGPIKVQVSFSLQDLRQIKGDLGKFSDD
PDRYIEAFQNLTQVFELSWKDVMLLLNQTLTTAEKQAALQXAXNFGDELCISYRAREGDETYPIGRIAVPLEDPKWDPND
EMGEWKRKHFQACILEGLRRTRTKPLNYSKLSTIDQGLDENPTAFLERLRGALVKHTSLSPDSVKGQLVLGDKFITQVAP
DVRRKLQKQAAGPDGTLEGLLGVATLVFCSRDWEEVQKREGRYKKKAEALIAALRAHRPQSPRDAPVNCYKCGKPGHFRK
DCPGNRRKPPxPCPICDGDHWRADCPQRHGSXGPEPVSQMVQQD
>MuLV_pol#LTR/ERV1 2110-5700  [Mus mouse genus]
GGQGQEPPPEPRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGGKRYHWTTDRKVHLATGKVTHSFLHV
PDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQPLQVLTLGIEDEYRLHETSTEPDVSLGSTWLSDFPQAWAETGGMG
LAVRQAPLIIPLKATSTPVSIKQYPMSHEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNK
RVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFD
EALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLREGQRWL
TEARKETVMGQPVPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLP
DLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAV
EALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEKGAPHDCLEILAETHGTRPDLTDQPIPDADHT
WYTDGSSFLQEGQRKAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRR
RGLLTSEGKEIKNKSEILALLKALFLPKRLSIIHCPGHQKGDSAEARGNRMADQAAREAATKTVPEASTLLIEDSTPYTP
AYLHYTETDLKRLRELGATYNQIKGYWVLQGKPVMPDQFVFELLDSLHRLTHLSPQKMKALLDREESPYYMLNRDRTLQY
VAESCTVCAQVNASKAKIGAGVRVRGTSTSTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVTKKLLE
EIFPRFGMPQVLGSDNGPAFVSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLNLAAGTRDWVLLLPLA
LYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQALQAVQREVWKPLAAAYQDQLDQPVIPHPFRV
GDAVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPAGAAWKVQRSQNPLKIRLTRGAP
>PlatERVR1_pol#LTR/ERV1 908-4014 (non-autonomous element, 100 AA N-terminal missing) [Ornithorhynchus]
PQCKLQATLKCEEEGITLTIGSLLGKPDLLSPRSQGSLMVVAEVPVETDDPVLLTLPPSLWSSGPTDVGFLRGTEPVKIN
TLLHKSPPCVRQYPMSPEGRAGLDPIISEFLENKILVECSSPCNTPVLPVRKPGNPPTYRFVQDLRAINAYVTPIHAVVP
SPTSVISGXSSRARAFTCIDLTGAFFTIPVSPESQYXFAFTWDNRQLTWTRLPQGFVHSPTIFSRALYKALLPVRFPGGV
GMFRYVDDILITGESEELCRQGSLMLLQHLFAIGLKVSRKKLQWCQRQVKYLGFILRAGERAIAPSRANLIQALPRPTTK
RELRGFLGAAGFCRAWIPEFGLITRSLFQLLKKESPDPLDWSPEAESAFHNLKVSLSSAPALGLPDYEKPFLLYVHEKMG
VASGVLCRTLGPHCRPVAYYSVQLDPVMLGQIPCIRCIAAAVLLLEKAQDILLGHKVILRAPHDVVLLLRGAATQALSVS
RLTRYELALLENPQVQVERCGVLNPATLTGPDLLARGGEEHNREEVVQTVVVARSDLRDTPLEMADVDLFTDGSSFMDQG
KRYTGAAVVTHDSVLWAGSLPSSCSAQAAELEALIQAFHLAKGLRANIYTDSKYGFGICHATGALWQSRGFLTSGGKPVA
NGERVARLLAAVRLPAALAVIHVRAHARGKDSVSLGNHKADQASRWAARHAPXPPLEALNTVVTAPQPGFLITEKERSEW
PTKYEAVERNGFFWVPDGRPILPASALRVVCLQTHQNTHYGAGALAAAVLRHWFAPGIHPVAKRVTTACPICQSFNANRP
RALPRGGRAWVYHPFEGLQIDFITLPRAEGYRYVLTIVDHLTGWLEAFPARHATAAFVAKVLLREVIPRFGPPSIIDSDQ
GSHFTESVLAEVYRCLGIERSLHTPYHPQSSGKVERANRELKTMLGKLCMETHLKWPQVLPVALLRLRSRPRGDLKVSPY
ELLFGHPPPAGEVPRPDQSITLMGGDETLAKYLVSLQQELNALQRDAISCQAVPLDGQASGRGRFSGRGTCGRWD
>PERV-C_pol#LTR/ERV1 gi|14275843|emb|CAC39626.1| polymerase [Porcine endogenous type C retrovirus]
GRRGSDPLPEPRVTLKVEGQPVEFLVDTGAEHSVLLQPLGKLKEKKSWVMGATGQRQYPWTTRRTVDLAVGRVTHSFLVI
PECPVPLLGRDLLTKMGAQISFEQGRPEVSVNNKPITVLTLQLDDEYRLYSPQVKPDQDIQSWLEQFPQAWAETAGMGLA
KQVPPQVIQLKASATPVSVRQYPLSREAREGIWPHVQRLIQQGILVPVQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRV
QDIHPTVPNPYNLLSALPPERNWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTFFDEA
LHRDLANFRIQHPQVTLLQYVDDLLLAGATKQDCLEGTKALLLELSDLGYRASAKKAQICRREVTYLGYSLRGGQRWLTE
ARKKTVVQIPAPTTAKQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKGEFSWAPEHQKAFDAIKKALLSAPALALPDV
TKPFTLYVDERKGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPVCLKAIAAVAILVKDADKLTLGQNITVIAPHALEN
IVRQPPDRWMTNARMTHYQSLLLTERVTFAPPAALNPATLLPEETDEPVTHDCHQLLIEETGVRKDLTDIPLTGEVLTWF
TDGSSYVVEGKKMAGAAVVDGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSINIYTDSRYAFATAHVHGAIYKQRG
LLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGHQKAKDLISRGNQMADRVAKQAAQAVNLLPIIETPKAPEPRRQYT
LEDWQEIKKIDQFSETPEGTCYTSYGKEILPHKEGLEYVQQIHRLTHLGTKHLQQLVRTSPYHVLRLPGVADSVVKHCVP
CQLVNANPSRIPPGKRLRGSHPGAHWEVDFTEVKPAKYGNKYLLVFVDTFSGWVEAYPTKKETSTVVAKKILEEIFPRFG
IPKVIGSDNGPAFVAQVSQGLAKILGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTTETGINDWIALLPFVLFRVRNT
PGQFGLTPYELLYGGPPPLVEIASVHSADVLLSQPLFSRLKALEWVRQRAWKQLREAYSGEGDLQVPHRFQVGDSVYVRR
HHAGNLETRWKGPYLVLLTTPTAVKVEGISTWIHASHVKLAPPPDSGWRAEKTENPLKLRLHRLVPYSNNNSPGQ
>CarERV2_env#LTR/ERV1 6039-7496  [Carnivora]
MTMKVVYFLFVLCSPILTDNSFLQWAQHYAELQNQTACWICGILPMSSTSGLPWWVSPLQGTDWHSXYTYISEXIYNPNT
XMFRDRSITNQNVSSWPMINXTWNLPGHNQTFSYPQTIKILTDFASPQXNARQXVPKLQNPTYRYTEDGIYQIWDTYLWL
TPTIGQLSQKAILCWEQRNHTYDTWANSTRHLGWLSLETCSQTIVLQATDWFATDWIRRPGTRRLAPNGTQRLCGTNLRP
WLPPGWIGHCTLGFAWIXGCVTKTITTPANLPNLKQRWTRSVFHWYDHLASIFVPSVGLESIIWHMEALNKYTIKALNDS
QNSISLLNTEVAQMRKAVLQNXMALDVLTAAQGGTCAIIKTECCVYIPDYHKNVTGLLKDMNTQIEALXDPSLSFNDWLS
SWFGGGLWSTIKGLFVGLLIXIAILILICCFFQCFSAWCRDSITTVTSHRQMVLTTHGDXSLLSXLDSAASAFRNSPIRS
PTDQC
>ERV1-2_DR_p3#LTR/ERV-Foamy 5214-6548 [Danio rerio]
MADTNLTCDLKACEGLYKQKGFIRVIRGFSGHLTIEKWLKPEYDRALGRKSVSVXGTPAISYRIEDCAVCGKPNVAFKLA
EGLYANRPNKAELLIQHGLGAHFPWWNELGDIDACALHDVTICGDCRESHQKVEIEQYEIKQDGCLCRNCQSCKQRFIAL
GRECRCVYDGEEFTSCERCKSLFSCKCLKLISKKQIWMTRKSRKALGALVENRIMTMWDINPVSLMTNAXSKFMAQRLXE
LSFCPEGLPGGQESLNGNESFRNGLIYLTHLGGWETAVKLQLHTQVSYKRGGLGACVWVLHDSEWFKCELSDAIIITAKX
MTFKQCIKVCEPKDEPSYFTESNISVYGSSQSFREGTAKLKIIRSTQPYHLMTREPSDEDKSRIEILDLTVLLNLTGSYL
GIGECIQGVNVYLNRSKDKSDMATGNKLIQFKKWISKKFSRGTE
>CarERV3_env#LTR/ERV1 6201-7643 via tfasty with CarERV2_env, 3 frameshifts and 4 stopcodons.  [Carnivora]
KVFFFLFVLAIXTPYLNGKSFLQWAQHYTELQNQSSCWICGLLPISSTSGLPWWVSPLQGTDWHYLHQYVADMIHHPNTS
TYRDISITKKNVSXWPMVNVTWDSPGHKRPFSYPQTIKILTEYAXPQIGSxQQIPxLCSPSYRYTQEGLYQIWDGYMWLT
PTIGQLSQKALLCWEQKNHTLDSWPNSTCQMGWLPLEACXHTIILQATNWFATDWTRxPDIRWLAPNGTQWLCGPNLWPW
LPPGWTGRCTIGYAWMHGRSTKTITSPANLPYLKQxWTRSVFHWYDHLTSIFLPSVGLEDVIWHMEALDKYTIKALNDSQ
NSITLLNTEMTQMCKAVLQNRMXLDVLTAAQGGTRAIIKAECCVYIPDYDKNITGLLTDMNNQIGALKDPTLSLNDWLHS
WSGGGLWSXLKGLLIALIFLIFIIIIILMCCLFALFSAYCRDTCKQFLTPSPSRQMILTTRNKFTPMSTLDSTAMAFRNS
YL
>ECE1_env#LTR/ERV1 gi|74700|pir||VCMVCE env polyprotein - feline endogenous virus ECE1 [Felis]
MKPPAGMVFLWVLTSLGAGIGAKIVKEGNPHQVYTLTWQIYSQSGEVVWEVQGNHALNTWWPALTPDFCQLAAGLDTWDI
PDRSPKNLETSMEGTSQQLTPQGCSKPWKRCALTERDFYVCPRDNRDRATAHRCGGYEEYFCSAWGCETTGDAYWQPTST
WDLITITRNYTKPDSCDDRVERERKTSRHWRDPLSLPLKITFTDSGKRALGWQTGYTWGLRWYLPGKDRGIILKIKLKID
TITQTVGPNLVLADQKTPVQLAIPVQPPRAPTQTPRVNPVNSTLSPSLGYPAPAPGPRPPYPTSPSRPGTGDRLLNLVQG
VYLTLNLTAPNQTQDCWLCLTAKPPYYQGVAIIGNFTNHTNAPLRCSTTPRHGLTLTEVTGYGLCIGKIPPSHQNLCSQT
VPSVGQGPYYLTAPNGTYWVCNTGLTPCISLQILNDTADYCILIELWPKIFYHDSEYIYGHYEPGGRFRRDPVSLTVALL
LGGLTMGSLAAGIGTGTAALIETNQFKQLQIAMHSDIQALEESISALERSLISLSEVVLQNRRGLDLLFLQEGGLCAALK
EECCFYADHTGIVRDSMAKLRERFKQRQKLFESQQGWFEGWYNKSPWFTTLVSSLMVPLILLLLILMFGPCILNHLLQFI
RERLSVIQALVLTQQYHQLRQFDAERPDAIE
>CfERVF2_gag#LTR/ERV1 318-1946  [Canis]
MGTAQSKFDPETPLGCLLANFETLGLXQDLRRRRLIHYCTVAWPQYRLDNQSQWPPEGTFDYQILTDLDNLCRRQGKWTE
VXHVQAFWDLRSRPSLCSQCSTTQVLLARAPLPPSLPPIPSAPKAPESFPPSPPSESPETLARPPTKGTPALPPPYPEPP
APSPSPPASQPHTSLPVSDPQPSPPTSPPISTRTRSHKVSSSPDLACPLREVAGAEGVVRVHAPFSLQDLSQIEKRLGSY
SANPGNYIKEFQYLAQAWDLTWHDLHVVQTTTLTPEERERIQAAAREHADQGHXTDAAVPVGARAVPAVDPGRDYQAGQE
GRRRRDRMAHCLIAGTRAASNRAVNYDKLREVVQNPDENPAVFLNRLTEALTQYTRLDPASPAGATVLATHFISQSSPDI
RKKLKKAEEGPQTPIPDLVKMAFKVFNTREEAAELKRQARLQQKVQLQTQALVAALRPAGSGSPQKGGTNRTPPGACFRC
GTEGHWARQCPNPKEPTRPCPQCRMMGHWKSDCPGLGGSSAPPRGGNPEPVSPAFQLLGLDDD
>PAT_1984-3888#LTR/DIRS [Panagrellus redivivus]
FSGKKCAGVGKYWTPQRILKSISEGYRLPWRGEQRPEEQRPNAQSTMEHAAFVTDEDEKLCSTGAAELVPSERLGDVKVI
SALSVSVNADAKCRLVMDLTTVNPYITANKIKLENVAIAKSLIPKSGFMLTFDMKSGYHQARMADSELIYLAFRWEGKTF
WMKALPFGLSSAPEYFTKLFRHPLATLRGDGVNCLLYLDDLLVWSETYEGACEASAKVRALFGKLGVVLNNEKSSVTPQR
EVKWLGVVFNLTHGTLKISKNRIENALAAAARLLNRKRPSAKDRLKFTGALNSMHDVLGPMAAIRTKSLFCFIASVTPRL
GVRLALSEREKADIKYWQRNLVERNVWRIQDTRPSEYVFATDASATGVGAVKLNPKDLTELSSAYREFDEYGGNDLEHHR
ELLAVQFALHHYLASKKNTVVTVRTDNQNIPRILAKGSGVQELNELVLQVTEWCEQRKVELMTTWIPRAMNSAADRASRE
TDPDDWAISKEIFEKLTAKFQKCQCDRFASHKTKQLDKFMSRVPCPGSAGVNAFAYQWTDWSSWCVPPPALLVRTWKHIE
SHACEGLLVSPDWPANVVATAASRAVRKGFAKLVYRIRAGTRCITPPAFSTGAFQTPYAQSDLLVYRFNTFPRF
>DIRS-3_DR_yr#LTR/DIRS 3940-4934 via tfasty with DIRS1_DR_yr, 1 frameshift. [Danio rerio]
VDLGLSTEVVQTILSSRAPSTRRLYATKWKLFTSWCTDHHLDPVHCPAGSVLQFLQERFEFGLTPSTLKGYVAAMSAYRT
DGLGKDPLVVRFLRGTRRLRPACANRFPTWDLSIVLEGLSTAPFEPIEDVSEKFLTLKTSFFLLAITSIKRVGDLQALSV
APSCLEFSPGMVRAFLYPRAGYVPKVPTEVVRPTVLQAFNPPPFMTPDQERLNLLCPVRALDAYVHRTSAWRTTQQLFVL
YGSPKIGAPASKQSLSRWIVEAISLAYEALHRPLPEAIRAHSTRSMAASKAFRSGQSLTGICNAAGWSTPHTFVRFYQLD
LDPTPGSSVLAI
>DIRS-2_BF_gag#LTR/DIRS 396-1844 [Branchiostoma floridae]
MDPTTSYGPGRMFPPVSYVQAGISGETHPTYQMAGSGMSRLTQIPTTFVPGFAHTNSAVPPAAASALPAGLLGAPAAGVF
APAGGGTGAFQPNPALAAGMPWNVFSEFSRLMNDMRSAWDQPNSRQDRRNLRSMAPDSESDDSDGDRSRRGWRTTSAARY
RSRSPLRSEDTDHPVIELHAPSASESGLLTDSELPEETEHSTAAETTETGNEPVPTRPSFLTSMNPDTPGMFISPGVLDW
YKEERLSPWCEEKFSLTEKPYHLDASQVEAVSAPRLQPVLKAKWRSEKQTIHAVKHDDSLRRIQNNALQAFQPVLKVIDL
IQPLLEHEDASVREQMQAIADHLNIAGQLSCGVCANITQFRRQLVHNWVEDKFKCLVNDNVQDGDDRLTKASCHWLLGTD
ILQRVEDIEKAGKTADKVGKTPKPSKRQSFYSSPLVAVDTAQPKMVFGRGRGVISRAGQAFRDRQRSRSRSGRSRGRGRQ
AKK
>DIRS-6_NV_gag#LTR/DIRS 295-1425 [Nematostella vectensis]
MTNKSSSSVDEEMNEDSLLRDDTAGAEPQLLLSAQNMAALRDNLGINTIQSAVENLTSLVSGQVCNNKREASPNSRSGAG
SARKKSRDETEGFDPSTIALDSPSGDSDNGDKGDSEDEESFLPPSIFDESESKGPEVAKTLASRVNESFTSKPLEGKLKP
LMDNYKSPVNCEMLCVPRVNSILWNELPKRAHQIDLGLQEAQKAIMKTAQVLVSVTDDMINAKKNKESLKPGSFIGPLSD
AITFVGHASYLTSLKRRDLLKPELSKDFQSLCSASTPVTTQLFGDDLSKFVDEISKANKVATKISASSSVSQRRRSRGGY
RNNNNNNNRQRNSSFLPRQNPNSAWGKTQGNQNQDSSRPYNRRYQASKAAINRDNK
>DIRS-8_NV_yr#LTR/DIRS 3293-4228 [Nematostella vectensis]
AQQLLLSAWRSQTSKSYDSAWRKWDSWCVKQQINPLSASIQDIVNFLAAQYDNGREYRTINVYRSAISGILPKVDGLCVG
QHPLVCQVMKGIFQRKPPLPRYTASWDVSQALMYVKSLGHNASLSLKQLSAKLVLLLALTSAERGSELVAHDLRFRKHHP
EGVSFNLPELTKSVRVGNSLKVSFHCSFPQDKLLCPCECLRDYERRTTEFRPVDPALPNKLFLANIRPHKPVTSATLAHW
LKGILSDAGIDSNTFKAHSTRGAASSTAARAGLSVTDIIKMADWSTDTMFRKFYYKPVHNASFGRTVLSQV
>DIRS-6_NV_yr#LTR/DIRS 3299-4282 [Nematostella vectensis]
RRVDSIRACLLSRGFSFGATKIICESWTKGTGKQYDGAWSKWESWCRERSHDPFQASVSTLINFLTSMCDDGKAYSTINT
YRSAVSTTLEAVTGINIGSHPLVTRFMKGVFVNKPPKPKYSSTWDVSQLTMYLKTIELSESLSLKELTLKTVSLIALVTA
CRCQSINLLDLNHMSVSDDQIVFVINERVKTSRPGKVQPRITIRSFPDNSRLCPCLHVKHYLDRTKSIRSCDKLFISYCK
PYKGVTPSTIARWLKAVLKCANIDTSIFKAHSYHSYRSAVTSKAFFKGASVADIMKLADWSRQCTFNKYYNKPIASSDTS
VSMLALS
>ERV1-1_AMi-I_5p#LTR/ERV1 6904..7740[Crocodylidae]
MFSRSSITNKACGLWWICGRWAYRQLPSNWTGTCYLGALIPGVWITQPTAAGIKTIPPNTHRAKRSTDNSFESIAKGGSQ
RWGDDEWPAERIIQYYGPATWEPNVVGREPTYLTNRIXRLQAVVEIVTNKTAAALRLIGDQLTQLRTTVLQNRLALDYLL
ASEGGVCKKLNLSDCCVEIDDNGELIKALADDMEKVAHVPVQTWNGWNFDWFTXWLQARLGWLKGGIVAFALLISALCLL
PCIIPCIMTLVRRTARSVVNREMLIRYQALALAEDYQNL
>ERV4_DR_gag#LTR/ERV1 252-1766 [Danio rerio]
MGGSYPKPEIGEGPKDWMYRCGWGYYTNPWLDNLAGWTEAQAMRPYPRDGSFDPHVLKRAHKLIYESEGDPEWDHDYMKK
GYEIWMKMMSVWNDKQNINLPKEVKKLIPKPLKGSASKIEVKRKETPKVPPAPVVTVPSVTVTVPTPTLSSPIPDEGQGK
AHQRMPLYPVQELERLRTEKPDQGDNQAFLWVSKKGGHAEVTPPSATQLKDVILLLPDMSRPVEFVETMIRVSRNAQLTG
ADYKFILMNKMGSQYDETALIDAVPCLCSKNDEVKLQPQQMIRRVKIKEGDYEEQEYTKDVPYFYWRDEQGAIDTLKRQL
TAYLVDTRCAHRDLSHVTSCKQEKKETVSAFLQRFSNAWIHLGGFDLPERQPQPLFISTFISNCTPDVQKILKFQLSDRS
QMTPEQLKQRLRTMTGDGLFDQTLNVALLQMGGAQQGGFQGSRPAPNGGARPRREGKCHYCGKQGHWARECRKKQSDKQK
GASPYQQCNFSPTQVPNQGTQGPQ
>ERV3_DR_env#LTR/ERV1 6275-8524  env? [Danio rerio]
TRKSSLNLSFSFVKLLQMAGPDDVLKLLILKEEIRRDRRLKMRRAFIRLVMPISFVVLILIALSFLLWIQVSLWTGRFHA
FSTNWDCEVADCRPSWVRYPCLNSTEGLNLLPTMYQKVKNRCYRLDGNETVAYWLGNSPNYPENTLIMQKGRWSQDGELD
VFEENYSSLSWIPKTLAQMNYSDCPSLVNKNRRYVVQQKSLGSTTKRNKREQPNSNYHHIILEGKAVKLPLYPSAPDPRH
LMSYFLPKAKNQLSSNRVVKSVVRSYADSNIFVRDDPSSPWYTDVVSDRRWNVLKTNQGKSGAMGLGRPYGAVCDKYGNI
DRTDKDNFDLNGSTDELPNVDALSLAWPRYTRFDDPWSETIHVERCMGKEFQQWYIKTFPRDKPEICKTAISKFLGLTDM
QIPLDVCNSSFVKKDYVWSHLTDVLVQYDLAVMMANKSVINLEDLHDHLEAKCCSQESVAFNVTMWMHLNMFHFYLEVVA
YRKAMLRVPETVDDLIWNEFKPHQVYMWPQIADVAIGEEWFDREKQFRQFLRPVPSVQELRDVHYAPGSGSCAFHQLVHH
IGPEWHPAGNCPHSNCAEIEYCVANMTNTTEYYPYVKAHLASGKYINAFLKQIKSPDAFSGYEYLNSLWLRSTGSPFLSE
PEAPSALAVMFAFTVGAVFTDVTESVEEFVEEAWGEFVAVSGSIVMKILKYVLFGFGGIIGILFIFLIVWALVRCCFAYI
FTSACRTLNPTDDEKHLLTVTNRLRSRMA
>ERV8_MD_pol#LTR/ERV1 [Monodelphis domestica]
MSVLNPTAFPSPLPRSDQKVSIVGITNHVQSVYLSQPLPFILGEVKDMHSFLLSSDAPLHLLGRDFLDKYKATIEFSPGK
EIRLSLSPSDAPPTFQILTAPIIAYDLPQLEEVPSSLWATDSSDIGRILSAPPIQVQLDPSKPLPRVPQYPLSREATEGI
RPLIDSYLEAGILIKCTSPCNSPILGVRKPGGRGWRLVQDLRAVNACVIPRAPVVPNPHNLLNQIPHSAKIFTVVDLCSA
YFSVPLHADSQFLFAFTWEGIQLCWTVLPQGYTESATYFSQVLKADLAGLKFPFGSTLLQYVDDLLLCSPDAQSSREDSI
VLLKSLAQKGHKVSKEKMQFVSSQVKFLGHLISAEGRSLDPARVAAILNFPRPKTKRQLRGFMGLAGYCRLWVPSFSLVA
KPLFDLLKASSPEPLIWNEAAKIAFMDLKSALSSSPALGRPNYSLPFHLFLLERNGISLGVLSQKHGDHFRPLGYYSKSL
DSVARGLPSCLRAVVAASDLLELVEEVTLESPLTLHVPHAIEVLLNSHHTQHFSTSRLAKLEASLLAKSNITISRCKTLN
PATFLPDIEESDRDCTEGHDCVNIVDSVLSPREDLQEKELENPDFSWYTDGSCLRNESGILVAGYAITTTAEVIEAGHLP
SAISAQQAELEAVTRACELAKGKRVNIYTDSRYAFGVAHDFGMLWQHRGYLTSSGTPIKNGAQVRRLLEALLLPKAIAII
KIPGHSRENSPHAKGNALADQYAKEAARQVPTTIGLTLSDKEEPIFENKLTQAEIVSAQEVMSRTIQEKLEKEGCVRNRD
TGLWQGPNGCVVLPDPLCRPMMEYLHSISHWGPDKLVSIARKYWWGRLRRAAEDVYLQCQICPKYNISKPLKPMPGKFPL
PEAPFQVWQIDFIQLPPHAGYKFVLVMVCMFSRWVEAFPCRQATATAVAKCLLEKIFPVWGIPREIHSDRGTHFTGSVVS
QLLTAWPVLHHLHCAYHPQSSGLVERVNGIIKVQLAKFMEDLNIPWPKALPIVLLNLRATPFGKLSLSPFEIITGRPMSL
FPPYTDSMSTKVSLLSYCQGLAKTLQGLNHLISQSVSRNSSSETPSTSKVKPGDWVYRKRHLRKDALQVRWDGPHQVLLV
NPSAAKLKGIESWIHLSHLKKAPTPKWSVKSMSDSKIRLTRRRR
>ERV16_MD_gag#LTR/ERV1 767-2482 [Didelphinae]
MGQQTSTPLDLVLAHFSVFKERAQNLSLTVKKGRLVTYCDSKWPTLELGWPKGGTFNLGVISRLSSRILDPGPSGHPDQA
PYIIAWQDLALNPPLWLQPFLQPLQPSPSLPPTRQDSPQVLALQLQATTSPPSSPKKPVLQDSDNSPPDPSPPPYAPLYP
DLNHLPGEAVAAASPHSSPPASRTRGRGRAPTPDPETEKPSSTSAILPVRVMGPSVPGAPRLYQYWPFSSSDLYNWKTQN
PPFSQEPQKLIDLCESIMSTHSPTWDDCQQLLQVLFTLEERERIFMEARKNVPNGVDGHPTTQQHLIEEAFPLTHPNWDF
EQPEGRERLRVYRQILMTGLRAAARKPTNLAKVNLVRQGADESPAAFLERLQEAFRLYTPMDPLAETSRAAILLAFVNQA
APDIRRKLQKTEDLGNQSISDLLRIAERVFNTRETPEDRAKRKDLEEKEERKRREEREEKRRQEERQKDHRCQREVARIL
AASLVQTPQTPPTGNPRPQGIPYRPVPQRLPGRRNGCFNCGKEGHWARNCPQPHRGGGGGSREKAKYPCPSRRGGLKRTG
LVIPPRVLGNC
>ERV10_MD_env#LTR/ERV1 7038-9016 via tfasty with RNNICER3_env, 1 frameshift and 2 stopcodons. N-terminus missing  [Monodelphis]
MESADPRAPRPKGPPCNQWGAGGSFYVCPSYNPEKPYCNSPGQFYCHHWGCETAVAGDSTSWAPPEQDPFIRLACHPSPH
QCTHLNFTVLQPTSGTWLHGRTWGIRKYAKWGRDIGTTFRITKRPVTTSHSIGPLQSQPRQPKPKIRLRKATPAPPKRRD
LPTPTPTCRVVTWYQYASSSCTGTAMAVIRNLTGHYIQPYAGSSSESSQRLLKILAKWMPDAPPPIWDPYPPPRGPPPRI
LGPYPLCSSRLSPSLSxPGPGFRSSxYFPYPSLLAAGNLNPRLDPYLNLLDGTFLALNNTRPNLTSSCWLCLTPSSYLSG
YGQNLAPSNLTILDPKSSNQDSNCNWMDTTVGVTVEVEGRGLCVGQSNPTDQGTYTSLCATNMALGSLPANSFLRPPNGT
RWVCYYSGLQQCVSVAYLSTGQDFCVAVVIIPRVLYHPEDEIPGALEHATHRQKRAAVGLTIAAILGATGAATGIGALVY
QQVGLQPVLASMDSDIKRLEDSIKFLEQSHSSLAEVVLQNRRGLDLLFFKEGGLCAALGEECCFYVNHSGVIRGNLATIR
KNLEKRQRDRESNPWATLSSLGWFEFSPWLTSLIVTIGGILLVILLLLIGGPPLVTLILNLLRRQVPLLLTQALPKGSQA
QPPPAMVITQQPRAPGTPSR
>ERV1_EC_env#LTR/ERV1 5980-7414 via tfasty with CarERV2_env, 6 frameshifts. [Equus caballus]
ILIIFFLSPFVMTDNFFLKWAQHYAEFRNQTTCWVCGLLPLFGTSGLPWWVSPLQGTDWHAMLLFTTQYISSSSLLQDSS
ITNHNVSLWPSVSDTWELPGHNQTFSFNTSAQTLTRISLSQVDHEQQVSKGKVPAYRYTQDGLYQIWDAYIWLTPTSGQL
SQKVTICWEQTNHTCDTWPNSTRPMGQMSRHMCSHIISLKNTDWFGTHWDRRPSTRWLAPNGTQWLCGSNLWPWLPPGWI
GRCTLGFVWMQGRTTFSISPPANLPNLQQRWTLSVFHWYDHLSSIFLPQLGTESVILHMEVLNKFTMKALNDTQHSLSLL
DLEVSQMCKAVLQNRMALDVLTAAQGGTCAIIKTECCVYIPDYHQNISGFLSDMSHQIKSMSDPPLSLNDWLNSWSGPGF
WTAIKTLFIGLIILLVFLIIICCLFRCLSSACQQSFTSWTTTRQMILSSPEALDALSALDSTGAVFRSAEPPTYTYGPI
>ERV1-3B_AMi-I_2p#LTR/ERV1 2116..5895[Crocodylidae]
RDEGDSTCHLLQLSSVQPKEVTLNCSAQDPLIPLEIGGHVYECLLDTGATFSSISKGHLSPSERQVTVMGIEGRPFRCSF
SQPANIKIGPLSAEHSFLLATGPVNLLGRDLLCKLRATIQCSPDGIILTFPSSQIPTLAAVLAVTENSSLQSLPLVLKEK
VPPELWGLTSSSVGLLKSADPVKILIRTNVEPPRVPQYPLKAEAIEGLKPLIEDFSKQGILIPCQSPCNTPILPVKKPKP
GPDGKPVYRFVQDLRQINKYVIPRHPVVPNPNTILTAIPPDTAVYTVVDLCSAFFSIPIHPESQYLFAFTWGSSQLTWTR
LPQGYVESPSIFSQILHKDLQDVTFPNSSSLLIYVDDLLLCSTSSEASTQDTIVLLTALAAKGHKVSPSKLQFCKSTVKY
LGHILEPGQRRLSDDRIQAILNIPKPITKRQVRGLLGMVGFCRSWIPAFGELTKPLVQLTTKDAEEPVFWDHEAARSFSD
IKTALASAPALGLPDYRKPFTLFVHERLGVASGVLTQPLGTTQRPVAYFSAQLDPVAKGGVGCLRAVAAAATIVEKAQEL
VLGYPLILKAPHAVALLLLQKNTQHFSHQRMNKYETTLLMATNLVIERCNTLNPATLLPLPSDGEPDSHDCLQVAAFSDK
PRADLSDLPLDNPDLIFYVDGSSKIVNGVRKTGYAVVTPFEVLEAEPLPGQLSAQAAELTALTRACQLASGHSVNIWTDS
KYAFGICHATGQLWKQRGFMTASGTKIXNAKQVHDLLHAIMSPKAIAVMHCPAHTKKGDQVSKGNALADAAAQAAALQPL
SALAFQTQIPQSKAYLGVSLKPKMYESAPPLEQQRWKAAGATCEEDGIWRLPDGRIVLPKVALRPYLQQLHQSEHLGCEK
LAAVTNRLFYAPGVYQEAKRLLEHCSICKKFNIKGEKSGPPGARPWAYTPFERLQIDFADMPKDNGYKNLLVIVDQLTGW
VEAFPTRRATAQQVVKVLLNEIIPRFGPPRTIESDQGSHFTADINRTLASCLGIEWKFHTPWHPESSGQVERMNQTLKQK
IGKLCAESGLKWTKALPLALMSIRTTPRGKLKLSPYELLFGHPVPQHSPLLPAHTSSLLGNEELTSYILSLQSQLKSLHR
YAALSQPLPADVPAHRIQPGDWVYVKTWKRSPLEPRWQGPYQVLLTSHTAVKVAEKDNWIHYTRTKKKEVSPELRIGSNA
SFPDLEKGKPEEDNCGLRGSTARLPDRDKGRPEADENTKTDXSWTXSPLXDIKLKLTXXX
>ERV1-3_Crp-I_1p#LTR/ERV1 572..2176[Crocodylidae]
MGQTGSVPVPPGSPLGIVLSGWAKIPGTGQVKKLKLIQLSTTVWPGYTYEDPSRQWPSLGSFDRETLRYLRGSLEDPHPR
QMDYWYVWANAASEIEKGRLGSSKKETRHLAPLQVSPKNPSETLPPPYAPTAPRSEEDEWRPAGPPPLPAPVTPPTPAST
ASSERSSDNETGSSSPVSTHTRSQTKKQLPARLAPLRQYPIATQEGIQYPYTHVPFNPQDLVLWQTNTPKFRDDPESVRR
RIETIINTHNPTWTDMNQLLDALLSKEEKAEIINQGNQWVSEDAQNRTNWPVQDPGWDPNAEGGNNLLRLQHARQSLLEG
LKRAGRKRADWTKVQAIKQGPNEHPSDYCQKLLSTMNRHGGDFDPSSLANQTIVNSAFVGQATDDIRKYITKHHPDWTTK
TLPQLVDLASYVFDRRPEVQKQEKLKLKQKEVNMLAAALTQHFQAPPRQGYGRGRGRGREQDRPRTWSPQPFNQPTRGPQ
PDDTCNYCKQRGHWKRDCPVRPRGTPAPFNAPRTPAPPEVDHYQQYLEESPELED
>ERV1-4_AMi-I_3p#LTR/ERV1 5859..6959[Crocodylidae]
MAFQWVILTGLLLWAHRTNAYLWESDTEQEDQWKDNTYLISTIAIAQALNLSDCWICGKQPPSTNFPPYPLIPWEGNFSN
PEWADTDRAGISTWQDNPYFKEIVLSDVMLSARVCWENPRGIGKRFLGWQPGCKLTINATHLIWPNNTAVGAKEAEKKGY
IPWNVSAPCSSLQRPYVWQFMEGSIGCSTPNKTWAWSHGCIXSCIYSSFTKPSCSYVNYTIYRDGSIPCPINPHTRKYAL
TGHFIICGTKAYTSLPRLWAGRCTFGGAFLEPGAIITHSELPIVWPKRQKRDWNSFWQGAAHFIGVSTPFLGNFLLDHRI
NQLAHALELIANSTAEGIGLLQEQASANRAMTLENRLALDYLLAREG
>ERV1-9_AMi-I_1p#LTR/ERV1 5106..6413[Crocodylidae]
MPPIEGPEEDERGPLEISEDEDEEILMALRRHSQKRPPKPKLASVSSPVADHTRQKAQKPPEIPNMDPDDLLVQAPLRVF
PGLEGNPSLLYKPWTRSELHSIAKDFPKITKNPHKFQEEFKLVCKTYQPLEADLLQLCCLICTPAQLDKWVKEAGWDKKC
EMEDGRPTARYAEQCRRLCGKMSEAIPQAFPKKTNWSVIRACKQKEEESVGDYRARLALVFNQHSGINEPDDNASGALAA
CFVDGLLPPIANLLKRICVGWEMENLDKLQSVVEHCKRSLKEKVEEQHNKLLALQIQQFQGPPQGRGRGGGRRGRSRGMG
MNQVDRQNCHYCKQPGHWKNECPNRPTPAQFPTQRAIGERDQAEDRSLLAPLVPLTKKGEISLLVDGKVAPFLVDTGASV
SAIQSKCLPSPPLTGQVVQAVGISNEPVPHPVTEPLTVSIGPLSAEHAFLLSSTSPVNLLGRDLLCKLGCSIFCTPKGVY
LELPETNGPSPQAVQELLDIPLAEYMPVLASLTMEEETLLDQVNPSLWSASPTEVGHLNTEPVKVIIDPTKLLPRVSQYP
LNPEAEQGIAPIIQSLLQQGVISPCTSPCNTPILPVRKADGKTYRFVQDLRAINSIVIPKFPVVPNPATILACIPPTATY
FTVVDLCSAFFRYHCTPISISFCFYIRATIYWNALPQGFCESPSYFSQALQKDLSDITFPSGSVLVQYVDDLLLCSLTKP
ACQTDSLILLNALADKGHKASKAKLQFCQPQVQYLGHELSAGKRLLSSKRIQSILSYPRPTTQKQLRGFLGAAGYCHQWI
PNFAQMAKPLQDLTKKDISDPIPWPPEADDAFVSLKRKLSSAPALGLPDYSKPFTLFCHEKEGCALGVLTQEHGGKQRPV
AYFSTWLDRLPKLSHPAYEQALHSFLPRKGGLRFRGSYTRTRRKTTPGRLFQYLVGSVAQAFPPCLRAVAAAARLVQQSG
NLVLQSPLKLMVPHSVETLLLQSKTQHLSNARLSKYEILLLSAAHISVHRCSLLNPATLLPLPTEGEPHNCLELVSSLTT
PRPDLTDIPLQNPDLVLFTDGSCYRTDNGDLVAGYAVVTLHETLESAPLPGVKSAQVAELVALTRACFLSEGKSATIYTD
SRYAFGVVHDFGQIWKERGFLTSTGLPIKNGPYIAMLLQALLLPSRLAIIKREGHSAANTEIARGNRLADEMAKAAAGSP
PSADATLFSLQPAPLPSLVELALLQDQAPKHEKAKWVADGCILHSDGLWRSQDGRLVAPKALHHSLAYVLHGPLHVGKEG
MERTLAQNWYARNFGPXAASLCAACPTCQAHNVGKIVKVEQGYRGLPEGPFQHLQMDFIQMPKCSGFEYVLVIVCLFSGW
IEAFPCKRADSLTVAKKLLNNIIPTWGIPATLSSDRGTHFTGKIVQHMSKFFNISQHLHCPYHPQSAGVVERKNGILKNK
LAKLCQETGLNWVTALPLALMFMRATPSRRCGLSPYEIITGRPMRLLSTPTPVPDLNLTHSYMQKYCQALMRTVSYFHSQ
VKDAYPANPVKEQCHDLEVGDWVYVKHHQRKTALEPRWKGPYRVLLTSHTAVKLTGVDAWIHASQCKQVPAPGLEEERRR
EGTGNPSPEEDGHWSASHLKGLKLKLVKVKP
>ERV1-6_AMi-I_3p#LTR/ERV1 5920..6951[Crocodylidae]
MRGSWNASDYSWNDTHNPPALTLTHTTGGYLCYKNNGTGKNMGSSRCNLTVSCYNNGSQDGLNFHFSYNCNMNGGMHIQA
GSPDSPTPYYICGKRAYKWLPVNWKGTCYVGIVMPGIRIRPRLGNRVRNRWGAVSRPADLPFITDTQGIFRSSFPWYGAA
KAMRGVNALSTAFERFANETIGALRGINQELWAVRQVTLQNCMALDFMLASKGGVCALVGKECCVYIPENHQEIGEHIDS
MQQALDEFEEEKRKSATGWWDSFWSWLPNWSGWAKELIKGLIYCTIVILVIGLCFCCIMNCMSLLCKKSVQVITKGEMRM
MVMKELERGEWEKKEIAQLMSMEV
>TguERV5_env#LTR/ERV1 5852-7987 [Taeniopygia]
MLHPVTRSNRVDGRGRRGTDCGEKNQNNGTQKQEQQSFPRIGKNLLKLVKLTDTLFPGIPLVLILIITLAEGGNPHEPFK
WELISWEGTRTIATFSNTGPPEFIVKLCDLVPIHCGKGPPFYICPASGPSYCNYPGHYYCGYWGCETIASGWSVKAPDKY
IKATWTPNGCVPEQTGVDLTGLRDVDYVASRDKEVCTRIKFQVLHPLGDKWLVGLTWGIRVYGGIPKDGGGHFLIRKVKI
PHDSLPVGPNKVLNSPISPTKKIVPASVTTTCPNPLSITNRTANDVVTXRDSGVLKSKDPLWDLMQASYRALNESKPNLT
KECWLCYNVRPPYFEAIGKPDKIQWSSGSNPRECPWNDQKNHTQGITIQLVTGQGKCIGTVPKNYQPLCNQTTIITTKTI
NKHKNRKDKWAIPTPGAKWVCSDIGVTPCLSLNVFDQSQFCVQVIIVPRLIYHTSEEVLRHFEGDLNIQKREPITVVTLA
TLLIAGGVGAGTGIASLVKSQELQSLQTAVDEDLAKIEQSIQNLATSVKSLSEVVLQNRRGLDLLFLKEGGLCVALNEEC
CSFADHTGVVQDTMSELRKRLNQRRKDREAGRTWYENWFNVSPWLTTLLSALAGPLIILILGLIFGPCILRCIVHDIKKR
FDIAKLLILTTRSGEKYKNASINEXEDCCECVMPRGGYAYCNCEVLPCECXDKCWDCGKRFIYSAENESNV
>RSV_pol#LTR/ERVK 2325-5090 [Gallus]
REYPRKRLSAGPRAPLDKFIGRATVLTVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCW
NTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNN
QAPARRFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISP
DKIQREPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRGSDPNEAREWNLD
MKMAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRA
SAVRTFGKEVDILLLPACFREDLPLPEGILLALKGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTDASSS
THKGVVVWREGPRWEIKEIADLGASVQQLEARAVAMALLLWPTTPTNVVTDSAFVAKMLLKMGQGGVPSTAAAFILEDAL
SQRSAMAAVLHVRSHSEVPGFFTEGNDVADSQATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNS
APALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDN
GSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERG
ENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEAS
PLFAGISDWIPWGDKQEGLQGETASNKQERPGEDTLAANES
>RNERVK22_pro#LTR/ERVK 2382-3212 RNERVK23 close [Rattus]
RATKNSSGLDLCASASTILTPEEGIQAISTGVYGPLPLNTLGLILGRASLSLKGLQITPGVIDPDHQGEIRVLASATSGP
ILIPTQQAIAQLLLLPKLPVRNPHHKDARAPGEQGISEVFWVQKISASRPMLTLSLNGKTFQGLLDSGADATVISDRFWP
AAWPLTDSATHLQGIGHSKNPRVSAQTIRWTDPEGNSGTVIPYVIPDLPINLWGRDILSQMNVIMCSPNEAVTKQMLAQG
FLPGQGLGKQAQGIKEPLVMTQKLDRRGLGSPPSHFP
>SRV_MM_pro#LTR/ERVK 1794-2729  [Mus mouse genus]
SGKREQGPAPGPEPTQAKTGLWGGQLHASKQQQSLSELSRATPGSAGLDLSSATHTVLTPEMGPQALPTGVFGPLYPNVF
GLIVGRSSAAMQGLQIXPGVIDNDYQGEIKVMAKAIHNIVTIPTGRRIAQLLLLPLLPTNHKYKSPKRGDQGFGSSDAYW
VQPIVKQKPMMTIWLDGKAFRGLVDTGADVTIIKQSDWPATWPLTPTLTNLRGIGQSQNPQQSSKVLKWKDKEGNTGNIQ
PYVIPGLPINLWGRDLLSQLGLIMCSPNEVITAQMINSGFSPGKGLGKNEDGTIHPIEARGNTGRRGLGYF
>TguERVK3_gag#LTR/ERVK 560-2431 [Taeniopygia guttata]
MGAKLSVPDRKLYLQVVGLLEGGNVKYKKSEVKKFVRWLSLTFQEISAEKLYQVPFWDQVGREILRQGDPSLSPFTHLAL
QIRLLVKNKFEGLPQPARDKSKPSSTPGPLSSPSTPAPSTSSARAPLQGSANGASATLPCPQTPVSPQCTAPSLRKSVSF
KNPPESPSPSDPQNGRQSLSRQTPQDGGDRMEFPATCAPSSQNSLPFPAPSNPFHSAANPFRSSDSSLSPPTVVSPPPDV
TSPPPYSAQGGARPSAPPPSPGHAPPMTSSGSQGPSSGSHGLGSGGGERGNCGLPHSPPTFSAAPVTFTTRRGGRLLAQW
SPIPQQTIRELCKAQKEFGRDSEYFRGLLRATLDSNEYVPSDMRILFSCLITPAEFMAWESAWRREVRDALPDLWAIAEA
SLDADGGIISIDHLCGIGEWDSAAKQADKIPREALAISAKAAKQAFFKLRPAGMVTNYLSIKQDPQEAFVTFIDRLCRAX
EVQVPDSNLRQGILTEVAKQNANSACKAAILSLPLDPEPTIQDMLEVCARKVTIVPPEQRETPRPPPKRVSFAEVATPPP
STPSTPSETRRPAPRGNTXDRTCHLCKKPGHWMPQCPLREQFYEFRRQQEGRGNPPTKGASKN
>SRV_RN_env#LTR/ERVK 5559-7294 via tfasty with PTERV1a_env, 2 frameshifts and 4 stopcodons.  [Rattus]
MIEFNLLKMFLWMVLLSQWKITCDASAPGKRDVTSPFAWRFFLTENYTNHAKTQSYGHLLATADCPPVGCQSAIMLNFTD
FxGTAxKVAPVLCFFFDQQRSYRIDRWIEENVGCPYXSCRIHDVRTLRNNEIIIQGPYQGHNFYRTPTGYTWVVWDPxDS
RWTTPVKGAMCMTRDTTWPSSYVYIWRSLVQVQTTIHAEIQEQEKXLNAQLTSLSSxHPFSWLXLLREGLMIANITGLGN
VSACFLCATLGHPPLTAVLYPTSFNGXSNIDKGFXPISDISLFLVPDREQFSFCYSNASTTLCNLTIVPNTDLFAPEGFF
FWCNGTXSKNLSAPVNKELLCLSVTLXPXLTLRTXAEYLGWAGLPSLRMKRAXFLPLXXGISLATSIVAAGLAGGTLGHS
LLTTAKLSQQFHLAIEASAESLASLQRQMNSLAQVALQNRRALDLLXAEKGGTCLFLGEECCFYVNESGLVETQVNKLHK
LSAELQRQKFSSAADDWWRSSMFSLLMPFVGPLISILLLVTLGPVIFNKLMAFIKQQIEAIRARSIQVHYHRLEMNDLGG
SSATNHLPCELNWTVNDG
>PlatERVK2b_pro#LTR/ERVK 1811-2389 [Ornithorhynchus]
MDNVKINPGDTVAVPVWPLPRDVLVTGLESRASGVVHTTPMGGGSSQVPLTNPHPYPIFIERSRPIAKATPLEAGPPDIN
LLQTITLAKPWKTVIVEGIPFRGILDTGADRSVVTLRDWPAAWPTTEGQIGIKGIGGTQTAREAARPLTWKCEGKQGQFV
PIVVQDLGTNLWGRDVMQGMGLKLTDQAENFG
>MMERVK10C_env#LTR/ERVK 5498-7234 [Mus mouse genus]
MNPKMILLLLMIETGISIPLWAIVRSWPVPLPVHSNSSTLPLFFATECYLDAPCARQTPQEPRVYNSTSFHLNYTLCFVH
NVDKPFTPCIFLKKKIISNWADPISQNKGSSGVLFNALTQVAQGAQSGSGDVENNIISPINITTIMIKGKVTIPKRSRWP
VGNATAIRSMPWCHPDLAFPIVFSPCQSKIFPRKEIAKGFVLSPPLDFAIMNDKGDATGKENIWPYYQWILSNEAGASTS
LSAFALLTGTFHEILNVSATLSNTSTHLDNVTTNRIIRNMTTSPVEVCVNPPFFFILAEFQNNTEWLDCTNVTCFLTQCW
NGTKFLALVVHLPIFVPVPVEADPEKFPITSLIRQKRGFGITAAIITAIVMSAASAVTAGTAMAHQVNTADTISQIAEKS
SEALLTLQKVDSHIASGLMLVNQRVDILQHNMERMMDVIQMSCVASTSHVCITPNKYINNSFIKSTDLSNYLKGNWSQEL
ERLQARLQMQILNLNGTRVEPVTLGDFTSWFTSAFSYFKEWVGVILFGAAICCGLAFMLWLVCKFRTQQKRDKVIVTQAL
LAIENGSSPEIWLSMLKN
>MERVK26_pro#LTR/ERVK 2114-2611 [Muridae]
ATGAFKLQTGQPSAPTVRGTTTPIEALWVSSISEGSHPKLTIKIDNKPFKCLIDTGADRTILRQQEIPCDWQLIPGPQLL
GIGGTSHAFITKQAYRWEDPDGATGLIRPLVAQVATNLLGRDILQALEVVLTTQPERDHITIEDITYKDNTQGDPKNPPP
NHPQF
>MMERVK10D3_gag#LTR/ERVK 179-1768 [Mus musculus]
MGNTISGHSVRQALKDLLKVKGIGLKKETLENFLKAVDQVAPWFPVSGHLTGPSWEKLGKDLKFAEEQGILAKRVLPVWK
LVRNCIEDKERCGAELQKGNEALNQVREERSQKSDAESSSSEGDMSEEDLESIADSLEKVKVKVQPSAPGPPRYAPEGAT
GRSLHPEAWRELSAHCFPVFQDAQGARFHEPLDWKVIQRLAEGVRAYGVSAAFIIAQLESLHRYCLTPSDWQNLARACLS
PGQYLDWKAFFIEYSGEQAAQNASAGQAAWDQDMLLGQGRFAAAQINYPIQVYEQINKIGTKAWKSLPNRGEVSGNLTKI
LQGPTEPFADFVARVVEAAGRVFGDPDTAMPLVKQLIFEQCTKECRQAINPYKHRGLEVWMKICRELGGPLTNAGLAAAV
VQVSQGKNGSRNTGCFKCGQPGHIRRQCPQQTGTGGQRPRVPGLCPKCKKGNHWAHECRSVKDIHGQPIEHDGARPKNGR
RGPRPQGPQIYGAVTEGWPNLRPPMQWNNPGGPREEAQGSTSVLPPDSY
>PlatERVK1_gag#LTR/ERVK 151-2407 (one frameshift) [Ornithorhynchus]
MGQVHFKDREQYVNLLKKVVKERGLIITKQQIEQFLECVEKCCPWFPKEGVIDLERWEVVGKQMSERYRQEGPSSFPVAA
FSIWNVLKICLTPENQVPLVHKVLKVDTAAGPDLPPHPPPPSAPKIYPNLEDFHFPPPPPEVDSSFFKEERQDPWSPVTV
KPNSPTPLQKAIITAAEQDQDIPLDFLTVFPVIEYPDLRIHTDRQAYTWRVRAAPFGGTSLAFDPLTPGPGGWGLHPQDR
PAEPPPPPLPSHPLTPAPATAPPPRNFLLFHSVRPGGPIATDLCNYGFKKANNQLTYTLQAYQQIMIAGKTAWQKLPAKG
ETNSSFTKILQGPSEPFEQFVSRLTMAIQRSVGDXTAGIILLKQLAYDNCNQDCKRALAGNKRTMTITXMIRKCQDVGTA
SFNANLMAAAMQQQNAKGTCFNCGKEGHFAKNCLKGKGMPSRNTRPSSVCPKCRKGNHWASECRSNFTRERTPISGNVKR
GQPQPRQTIGAALTFSQARSVAKENTLYPQHTAISPMQTSPEPPQEAQDWTFPQLYK
>MYSERV_Rn_gag#LTR/ERVK 467-2443 [Rattus]
MRNTMNIFWALWNDILNGLTVVNFEEIDTLSFTGIAIFILLIYYIFSKDRALNSKFLALEKKLQVMLEQKFLKFIDDSEQ
QRDKLKSWQQELEETLEKRIRQLIDQIEQQGDRDRIWKQSLEDNLLKLANQNKAEAAISELQHKEKLRLWKQGLEQKIQV
IMEQHEQQKEKIKSWQCSLEGTLELKTQEIIDQNKRQKDENEGGRQELERMLEQNIQQLTGHTEQQRESNEVWKQDLENN
FLKLINQKIMDSRLLEVQYKEKFKVWKQSLEQRIQELKEQGERQKERYEAWVQTLREEFKITTKEKTQVETEDKIRESQP
KVIRKQTLVYPVSVQQRPPDDDHPQGYEEFEWQPMDVLELRKFKESVTNFGMHSPFVKQILISWAIKNRVIPQDWKDMVR
AILEPAENLQWISWWREEVREIARQNRARGREISTDQLLGEGRFAEVEVQAVYDEETLAWCRLSALKAWDKVAESGKRLE
TFTQVIQGPKETFPDFLQRLTSAVERSVSDSAARKAIIESLAFENANTECREVIRPLKARSAPIDEWIRYTAIVGSCSPD
TTVIGEAATGQLEMTQDFKCFNCGEQGHLRYYCKKNQSNTKRGTMPPGMCQRCGRGGHLTKECRAITDRWGRILPKNSQG
GLSQAPMPGRESSLPQNN
>TguERVK5_gag#LTR/ERVK 180-3179 [Estrildidae]
MGSHLSKTEWDVFYRLETILQDKGRSDISKHELKDLLTWVKANTQNIDLKSAFTFDFWDQINWKIYNLVSLKKKETLVKL
MPVSRALMESFKPNDHGRDFLEHQNRTPGSETLIPSGAGSSSSSGGVSGFXRGSFPSPGVSGVSPGSVNNTPTPGKGESD
QLPASVVCSVSSGIPCVTDAATGRPPIPPRNHPPPGLPGKRSGFLLCSENLGGPRSCSGEARILMGPGDESLGKLCKTXA
AVSVPCFSSEQAAAGPCSEVLQAGFAEGSSGSALPGQGAVGVTPATVSPSQEVTPSDRAQADRLLCSSETSFRVNSSLKP
LPGFSPLVTPQPPVVAGGGALDLALPAGERAGGRTEVTGGSQGLGRAGMALPREMDGVEAGELRKVSVEIQTDRLEALKP
VSFAVGGEKSMSKLQFGTESFPAASPRAGIRRGTCNSSLESVTNTNSGSAAREQPNLYESKRIQFSELRHDLAGSGFLSV
TDTTHSAAATSNRGGDVGNVELSSSTLPGRAPGEACCYGDTTAKNLELLGRVPGTADCCNNTTCSSGSDTGVMRGKNKTR
SKSEVNLPLQLPNWSNISQNLEKNLDSNKQLLALPVRYGRNDVNPQYETLSHHDIKELRQALKDSGFSSPYFNNVLKSIF
NSYDLVPADCRNVASLILTNSQYLLWELQWKKLLNKLVEKYENSPYENIDIAQLAGDPPFHRPENQAAELPRPVLTDIKD
AARKALFSVEPAGTHVNAYTTIRQGESESFGSFLDRLTQAVEKQCPDEQAHSCIIQNLAFVNANEECRKIILTLPDQPPA
VTQMLTACSKLTSPQHLANVQVNAFGKQITESQEKLGKTLGDNLAKALGENLGQQMEKLEKALETQTKIFEKSVGTVQLD
SDKKTCCFACGKPGHMKKDCPTKTIQPKQLSICPRCRKGKHLAKYCHSQFDIDGRPLPLNSKKSADYHRASTQVVVPPYS
QLPSQMVLVPQSFIPQSTIPQMVPAQYPQVQGSNWPPQN
>ATGP2_gag#LTR/Gypsy 164-1566 via tfasty with ATGP1I, 1 frameshift and 2 stopcodons. gi|4432807|gb|AAD20658.1 has introduced an intron to hook up gag an pol. Seems unlikely. [Arabidopsis]
MGKSSKTGKSKKDKGIVEETLVEEETMINEKTRVGTMLDGTDSAGPEAGKKSINEEAPESSGARDNTDNRNNTPTAQEQW
DLMKGVMAQLATLTKAVVADPVVQRVDNQKDDDSEVVEVNPQPNHGRKRGDYLSLLEHVSRLGTRHFMGSTDPIVADEWR
SRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNWWLTVEKRRGDEVRSFADFEDEFNKKYFPPEAWDRLECAYLDLVQGNRT
VREYDEEFNRLRRYVGRELGEEQAQVRRFICGLRIEIRNHCLVRTFNSVSELVERAAMIEEGIEEERYLNREKAPIRNNQ
STKPANKKRKFDKVDNTKSGCxDRGMRDLWxEPQRNLLKAIGACGRCGSKDHAIQSCPRMEPGQSKVLGEETRTCFYCGK
TGHLKRECPKLTAEKQAGQRDNRGGNGLPPPQKRQAVAPRVYELSEEANDAGNFRAITGTFSQLPIHYFNNCICIASCIW
EMGGTQHSKG
>ATGP1_pol#LTR/Gypsy 1669-5067 [Arabidopsis]
MLGFLAHEVCVGTLLVGGVEAHVLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFLAVLGRAKGVDIQIAGES
MPADLIISPVELYDVILGMDWLDHYRVHLDCHRGRVSFERPEGRLVYQGVRPTSGSLVISAVQAEKMIEKGCEAYLVTIS
MPESVGQVAVSDIRVVQEFEDVFQSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGKGFIRPST
SPWGAPVLFVKKKDGSFRLCIDYRGLNRVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTR
YGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQ
REMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEG
FVSLKEMLTSTPVLALPEHGEPYMVYTDASRVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYL
YGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPGKANVVADALSRKRVGAAPGQSVEALVSEIGALRL
CAVAREPLGLEAVDRADLLTRVRLAQEKDEGLIAASKAEGSEYQFAANGTILVHGRVCVPKDEELRREILSEAHASMFSI
HPGATKMYRDLKRYYQWVGMKRDVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITMDFVVGLPVSRTKDAIWV
IVDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTDGQSE
RTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCRTPLCWTQVGERSIYGADYVQETTERI
RVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVGPVAYRLELPDVMR
AFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEARMKA
RFKKWFEKQVAA
>ATGP3B#LTR/Gypsy 34-4533  [Arabidopsis thaliana]
MVTTRSQEGDGKGKEVELEVPLDSRVTRLETTVAEQHKEMMKQFADLYAVLSRSTAGKMVDEQSTLDRSAPRSSQSMENR
SGYPDPYRDARHQQVRSDHFNAYNNLTRLGKIDFPRFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQ
SFIQSGVGLEVLYDWKGYVKLLKERFEDDCDDPMAELKHLQETDGIIDYHQKFELIKTRVNLSEEYLVSVYLAGLRTDTQ
MHVRMFQPQTVRHCLFLGKTYEKAHPKKPANTTWSTNRSAPTGGYNKYQKEGESKTDHYGNKGNFKPVSQQPKKMSQQEM
SDRRSKGLCYFCDEKYTPEHYLVHKKTQLFRMDVDEEFEDAREELVNDDDEHMPQISVNAVSGIAGYKTMRVKGTYDKKI
IFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKVTDFSWKLQTTTFQSDILLIPLQGIDMVLGVQW
LETLGRISWEFKKLEMRFKFNNQKVLLHGLTSGSVREVKAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELG
EESVVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSPYASP
VVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEY
LVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYL
GHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFEWTAVAQQAFEDLKAA
LCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFII
KTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYANDS
QLQDIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKGLFYWKGMIKDIQ
AYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAH
AYLDNVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWL
ALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHRMKQFADQHRTER
EFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLALPSYSQVHPVFHVSQLKVLVGNVSTTVHLP
SVMQDVFEKVPEKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPEFEA
>ATGP6I#LTR/Gypsy 258-3971 via tfasty with ATGP5I, 2 frameshifts and 3 stopcodons. [Arabidopsis]
MVTSEEDEASSASSLERRILKTVTSAMATLIDEKLSALNLHQVNPDANPCLRQEEPREDEEARNYYSHASSHSSQRRHRR
ERPPPRDPLGGLKLKIPAFHGTDNPDTYLEWEQKIELVFLCQECLQSNKVKIAATKFYNYALSWWDQLVTSRRRTRDYPI
KTWNQLKFVMRKRFVPSYYHRELHQRLRNLVQGSKTVEEYFLEMETLMLRADLQEDGEAVMSRFMGGLNREIQDRLETQH
YVELEEMLHKAVMFEQQIKRKNARSSHTKTNYSSGKPSYQKEEKFGYQNDSKPFVKPKPVDLDPKGKGKEVITRARDIRC
FKSQGLRHYASKCSNKRIMVHRDNGEVESKDESAEEDSMEEDVESPARGEFARRSLSVLTKAEEQAxRENLFHTRCLVKD
KVCSLIIDGGSCTNIASRNMVEKLGLEVLKHPRPYSLQWRNETGEMSVKEQVKVPLSIGKYHDEIMCDILHMDASHILLG
RPWQSDRKVLQDGFTNRQTFEHNGRKTTLIPMTLHEVYLDQLSMKQRAIKPTEPIDTKGKNKVSKNSLLFVFKETLICSI
NPVPVLPSKIELILQEYKDVFLEDNPIGLPPISGIEHQIDFVSVAALPNxPAYRINPTETKELERQVNELMDKGHIRESM
SLCAVLVLLVPKKDGDCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQRLYEW
LVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVLDLLRKEKLYANLKKCTFCTDNLVFL
GFVVSADGIKVDEEKVKAIREWPNPKNVSEVRSFHGLAGFYxRFVKDFSTIVAPLMEVIKKDIGFKWEDAQENAFQALKE
KLTNSSVPILPNFMKSFEIECDASGLGIGAVLMQDHKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKKFV
IHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKGKDNVVANALSRRYVLLTSLDARLLGFGQIKDLYANDSDFS
KIFQSCEKFTFGKYYRHDGYLFFENRLCVPHSSLRELFLREAHGGGLMRHSATKFSPFEIVYGFKPTSPLDLIPLPLSER
SSLDGKKKDDLVQQVLNLEARTKQYKKYANKGRKEVIFNEGDQVWVHLRKKRFPEVRSSKLMPRIDGPFKVLKRINNNAY
KLDLQGKYNVNGSFNVSDLQPFFADTSDLRTNPFQVGE
>ATGP4#LTR/Gypsy 27-4900  [Arabidopsis thaliana]
MAPPLPKATASDTAVESPELGSTTTPPPEEPPPAPHLDTRVDKVEKEMTYVREALTQILRNQIFGVTREGSAAPIGFSTP
TPALPLQASYPQHLEGPNRGVRFSSPAPALPVYTSHPQHLEVQNRETLFSGTNQRDTHPRPLLFDQSRYQASTSEIPRLP
ASPFEPRRFHSSPLEPPGFQLNASTGLPSSSGFPSNPSTGFQTTPTFQTQTFPPQSAPHQPRFEAAPRRTVDYPAYEGGN
ADDWLFRLEQCFLSNRTLEEEKLEKAVSCLTGASVTWWRCSKDREQIYTWREFQEKFMLRFRPSRGSSAVDHLLNVRQTG
TVEEYRERFEELTVDLPHVTSDILESAFLNGLRRSLRDQVVRCRPVNLADIVEIAKLIESQERNAVSYQVRNQARTNTAP
FNNQVSTGSRVVDRAPTRQPFIPSRDTTRASGSGEARNSNPCRYCGDRWFQGHKCKPQKLKGLAITEEVEEESPLIEELN
EPLTEEEGDPEPAEGFKVMTLSSLNDESQEQSMKMRGYIGNTKVVLLVDSGATCNFISEALVREKGWLVTQTRSFGVKVG
GGRIIKSSGKCVDIPLEVQGIEFVQDYYLFDLGDLDLVLGFSWLAGLGETRANWRDLRISWQIGRTWVSLYGDPDLCRGQ
ISMRSMERVIKYTGTAYLLELASLFESKKQEEQTALQPAIQRLLDQYQGVFQTPQLLPPVRNREHAITLQEGSSPVNIRP
YRYSFAQKNEIEKLVREMLNAQIIRPSVSPYSSPVLLVKKKDGGWRFCVDYRALNEATIPDKYPIPVIEELLDELKGATV
FSKLDLKSGYFQIRMKLSDVEKTAFKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFRPYLRKFVLVFFDDILVYSPDMKT
HLKHLETVLQLLHLHQFYANFKKCTFGSTRISYLGHIISEQGVATDPEKVEAMLQWPLPKSVTELRGFLGFTGYYRRFVK
NYGQIARPLRDQLKKNSFDWNEAATSAFQALKAAVSALPVLVLPDFQQEFTVETDASGMGIGAVLSQNKRLIAFLSQAFS
SQGRIRSVYERELLAIVKAVTKWKHYLSSKEFIIKTDQRSLRHLLEQKSVSTIQQRWASKLSGLKYRIEYKPGVDNKVAD
ALSRRPPTEALSQLTITGPPTIDLTALKAEIQQDHELSQILKNWAQGDHHDSDFTVADGLIYRKGCLVIPVGSPFIPKML
EKFHTSPIGGHEGALKTFKRLTSEVYWRGLRKDVVNYIKGCQICQENKYSTLSPAGLLSPLPIPQQIWSDVSLDFVEGLP
SSNRFNCILVVVDRLSKYSHFIPLKHPFTAKTVVEAFIRDVVKLHGFPNTLVSDRDRIFLSGFWSELFKLQGTGLQKSTA
YHPQTDGQTEVVNRCLESYLRCFAGRRPTSWFQWLPWAEYWYNTSYHSATKTTPFQAVYGREPPVLLRYGDIPTNNANVE
ELLKDRDGMLVELRENLEIAQAQMKKAADKSRRDVAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQV
AYKLQLPEHSTIHPVFHVSQLKRAVPPSFTPQELPKILSPTLEWNTGPEKLLDIRQSNTNSGPEVLVQWSGLSTLESTWE
PLLTLVQQYPDFDLEDKVSLLRGS
>AAZ28943_pol#LTR/Gypsy (fragment)  gi|71148691|gb|AAZ28943.1| polyprotein [Phanerochaete chrysosporium RP-78]
MPRVGFEPDNSPFHPALLRNEDDATYVGREFFVRKEGREEVSTVLFGDEQVELAFQIYRPAPLAYDELPGQVARFRTNLK
MSAARGGQHRVGDTTQALREDNLGHLRDPPRAEERSAIPCIGHTHAIKARESEEYWRAVEHYLRTGQRPGDAERDARSRR
EFDRKCAKFLWKDERIWWIGTRGVPRLVIREPDRRKELIAETHAFCGHRGRDATFVALSDRYFWPNMFDDVAWHVRSCNV
CQYRSKVRPIEPISFTLSPSVFRRFVLDTIYMPTGHYGYKYLLHASCSTAKWPEARGARKNTSSVWSKFIWESIICRFGC
VPVLVCDGGAEFKGAAREILERHGVAVILSSPYHPQGNGIAERDGKTLQDVLLRCCGDKPNVWPSYLDAALLAIRVTTSR
ATGFTPYFLTYGQHALFPFDISDRTWFVLDWDKVETTEDLLVTRVKQLARREEDIGSAVEHLEESRRRAAEDHNRRHAAR
LRNEALEPGTWVLVHETWLDNQHGNKGALRWAGPYVVHERHESGSYALRELDGTIVKEAVAGSRLKVFYFRDHHQTMHGV
AVEPSLAPSIVRVFCGTQTTAPSLQQAVFRGEDGGLDITWIEEDRVWYAACTRVKCRTNLQEIRDAQQGLVPWRRKSK
>TguERVK6_pro#LTR/ERVK 3449-4342 [Estrildidae]
VSLTDRRGWKTSSGSGKREKERESXPARSDTNPGGDTEPAGAILGEQQTEPLSRAISKIPSDPDLVPPGFQRVLATSKLT
CFLDNSHAVIPTGVTGTSWKRQDFLIMARDRSSILGLVVYPSLISANRNEELMVTAKALRPPLTIPQNTPIARAMALPSH
PERQVMPVFNKRDSFSGDQAEVHASWVKHXSRDRPVVTCQLTCNEKTIAITGMLDTGADVTVISYIFWPREWDLVAPLGS
LXGIGGSSLCMQSENAIVVTGPGGKTAVIRPFIVQKPITVWGRDLLAQWGLKLELDF
>TguERVK6_gag#LTR/ERVK 321-3686 [Estrildidae]
MGGEFSQEEAQTVSVPREFSREEIQIVSALQGIISAHPVEIAQKELKMLLLWVRCNFPPSDLNLLFKPNFWQEVNKQLYY
RTIKKDKLAAELLPSARTVLESLAQCGSSSQAATAPGGKQGGGQSSQQLGTGPSTTDIVEDTPSRPVSPSSHCSSVSRES
PGSSDVETPQMEASKPGAAPESAVGGGAGSSPVGESAYVSVEQREEGEESALASAQAGSSKQPAQKAKARGGAGAGRTGA
GAGGASAAVXRPERPXTRSVSRIREAAEAAARXARESGSLTAAAESAGGAAEGQREAXLAAALAAGMRAMVERIPKAARG
GDFSHLERAARAQAGLSRHTRAAGAGAEPGEGQSEAETSGPEWDQEGEDVSFGGDDSGSXSEAVRGGARRKRGRGRSRGV
HTPVMTQAGTGRDQDVNIPQGTVPLQFPWQQPAQAHSQSLSASDMXRIEQLLQQESVSQTAGIANVNQLWGEMLKSLSGI
TAGFANVNRLSEEMLKCLSEAQIEEQSAVPASVGQAAAPSSGGTTTLQQVLQDSASQVTAPPSGGTVTLQHFFPVSCKKK
SRVKKAASARQQEPPLTPEECGTQDTSAEAQQQDDTIRITASEGVPAWTIPKSRSAKISGQGESISVSKRVVEFLLRYLS
TALESQPELLVHLPKIFQITQGSHVFXSTAGAPFFSGGTQPSSSQMPQTPLVSVSAAXPKLQSXQMTPLYRQVPTEFPAL
PDAKVDWQDIRAELEKEKGLLQGSGNIMMPVNYDAQGQNPRWERLDRGAIKDLAKAIRDNGLSSPYFKQMLKSVFGMYDL
TPYDLKYLATSVLTDTQALIWQKAWXRSLEELRARYQGGPNANLTMVQLAGDPPEDDPTQQAVRLPRHVLSDIKEAARRA
ILQIAPAGVQDNIYTEIKQGSSEPFSSFVDRLSQAVERQVTEEGAKPHLTKSLAFSNANPECRRIISMMPHQATLADVIE
ACSKVGTPQHVASIMEEHLGDRIEKRVKEALANYAKGNTGAERRCFGCGAQGHIKRNCPQLAKPNKPPDLCPRCRRGRHL
ASECHSQTDVDGKPLPVPGNGKRSASRRQRAPTQILAVTQNQQGQSSGSNKQNPSAEQSPKSPATQTWYHPDSNASWQPP
N
>FFV_bel1#LTR/ERVL  gi|9629928|ref|NP_056917.1| bel 1 / tas [Feline foamy virus]
MASKYPEEGPITEGVEEDFNSHSTSGLDLTSGNKEEPLISLALLSMHTSKIVVWIRDHFFVKILSFGGKQKLYYICNQCH
KGIPESGYITLNTKYYLYEKGPTETGTKGLTLMRRHVQNSPCFLNSRKESGTPKTDPTRPATSYSLCRSDYQEAGCSRPT
PSNSESVCNGLGQPSERGHTSGESGGIMEEVSFISWLEGLWGEGFDYAN
>BFV_env#LTR/Foamy gi|9629647|ref|NP_044930.1| envelope protein [Bovine foamy virus]
MAPPMTLQQWLQWRYNLETTNLLQMNPKMESVCLPDFDPPGDEEVSLRIRCKYWIYLCCATSTRIMAWIVFILTVLSILL
ISVLIAVFRLQWKGAIESPGPILVWNNSNSINAQPTTPPHYSRLRRAIHLAQKPVQVNFTSIPQGLFLEPHPKPIISKER
VLGLSQVVMVDSSTLTQKLNLEGEAKSLLIKTINEELISLQDVVLNFDLPLGDPHTQEEYIAKRCYQHFGHCYVVHIPGG
KEWPTREIIQDQCPLNNSWLTALHYDYLPAWDYYNQPPPRQLSLKDFRKYNISNNGSRYEAYRLPLQDKIGAVAFCSPTL
YSSWWNYTQSSREREELFRRKLETFLNPQTGCLNPEALPGTWHTLGKGEWFRDLTTYDFCKKPEAVFGLNKTYYSWSLWE
GDCGRQGNDTQDYPPECRNYEKKDGVHVYGCRYWRTYSQTAHTPDNLSCYLSEDYCLFQPKWDSAEIRSDLGYLAYLGAF
PSPICIEARNLTDQDYKVTSIYAECVKQGKQYDIIDVTRQLTSKLTRRGVFLGDLPADRAFSLLTDFSLPASYQNKTQDG
RRKVCSSKRTRRSINNWRRLQITGQSMNQAITTLSKLSDLNDENLAAGIHLLQDHIVTLMEATLHDVSLLGHMTSIQHLH
THLATFKNLLIGNRVDWSVLENKWIQEELKYTDEVMNVIRRTARSITYDVQNVKNTSDSTMWEIYIYYELILPERIWIRN
WQVANLGHLTHNSGYLTHVTIHHPYEIVNQDCEELTFLHLVDCHEQDYLICEEVMEVEPCGNLTGSDCPVLAENIQAPYV
YLHPLKNGSYLLMASHTDCSLPPYEPVVVTVNDSLECYGKPLKRPLTSHTEIKLFAPQIPQLRVRLPHLVGIIAKLKSLK
IKVTSTWESIKDQIHRSEQELLRLDLHEGDYSDWILQLGNALEDVWPVAASAVSTIGTLLEKAAGTLFGNVFSILAYAKP
VIIGIILIILLLLVIRILRWLAVERRRKQE
>LTR57_pol#LTR/ERVL 1709-4718 via tfasty with GGERVL18_pol, 6 frameshifts and 5 stopcodons. [Primates]
QRTKRGWAKWVPVHLPWPRQAMNAKQYCLPGGHSEITQTIQKLHKVQIVQSPYNSPVWPVKKPDGTWKMTVDYRELNEVV
PPVXAAVPNIAQLLEQVVLKLGSVHAVIDLANAFSSIPLAEDSQDQFAFTWEGQQWTFQVLPQGYLHSPTVXHSMVAQDL
SRLSLPASVSLFHYINDXMLTSESLTDLETALQTVLTAxKDRGWEVNPXXIQGPGIAVKFLGVTWLGKTxNIPGAVTDKI
AQQPVPQTVKQLQVFLGLLGYWRIFIPHLAQTLRPLYTLIKRGKKWDWTHIEQEAFDKAKILVKQAQALGAPLPQHPFVL
EVTRDATGMNXGLWQKQPMGMVPVGFWSQLWKGAESHYTVLEQQLLAMYRALQQAEAITRKQTITIKTAXPIKGGMEGLL
AKPTSGVAQLHTLQKWHACLQQRGVLSTSPLSQALQEVLGPIHSEQVEGADMAVEPPTRPTIIYEGTPPIPTRAWYTDGS
SKGTQHQWXXVMVNMDTDXIWLEWELGQSSQWXXLRAVWILXTHEPWPLVTCTDNWATYRGLTMWINQXATDXWQVXXRX
LXGTXMWQDIHIRLHERDAHLAVYHMDAHSSKXPXXNQEADGLTHSRXGICPSPSEEXAVXXHHKSGHQGAATGWAIAKA
AGIPIQYADILAAVQNRETCSRLxPRKXPSAPGHIRxXVQXTRDWQVNCIGPLPRNGGKRYALTCVDTTTGLLQAFPIKR
ATQLETIKCLTALSSSYGMPRRIDNDQGPHFTGHDIQHWASEQNIDWRFHLPYNPTGAXLIREKKNGLLKTQLRALSQDG
SLXSWTKNLPEAIQILNESPTTTHGITPYEWLARPVKQAPQTLGVTSETXSHAPEADGQTVLLRTPVDLPSGDGYMDLKL
SWKVPPYWIGFMALEGAMKTAGGEVVPAVLLDGGPRXLXYQHAAAPIPAGVVIVWIAxARPETYQLAIMPAPREGSHVWY
CKPGLRPAVASLLIGPMGENIAIIMLQGIDTPMRVPTKHLCLRP
>EAV-HP_pol#LTR/ERVK gi|50880251|emb|CAF25156.1| reverse transcriptase/integrase [Avian endogenous retrovirus EAV-HP]
MGATVCQLSAQYAIPLRWKPDTRPVWVDQWPLPKEKLDALQTLVARELRLGHIEPSLSRWNTPVFVIQKKSGAFRLLHDL
RAVNSQLIPFGVVQQGAPVLSAVPEEWEVTAIDLKDCFFSIPLAEQDREAFAFTVPVSNNQRPTQRYQWRVLPQGMACSP
TICQMVVGKILGPLHHTSEASECIILHYMDDLLLAAPTLARLQDLETCVISLLTKAGFTVSSEKIQRGSGVQFLGYKFDE
GTVRPTGVNITPRIRTLWDVQKLVGALQWIRGALGIPPRLMQPFYDQLKGSDPREPRTFTPDMSEAWDEIVTSCLHTALS
RYNCKKELEVAVCKCDSGATGLLGQDLGAKPQPLWWNYSVQPVHAFTSWLEVLAKLICKCRLSAVRIFGQEPSVIYLPRS
FRDTSPLPEPILLALVGSSATVTFTDSLSIFELARPMQLSLRCRVQASPVDGPTLFTDASSSTGQGAVVWGRGSCWKSVI
FQDVTASVQILEVRAVALALRLWPTIPCNIVTDSAFAAKLLLSMGQEGISSTEAAMVLEDSLCTRTAPVAVMHVRSHSEV
PGFFSEGNAAADRAAGTHVFTLKTARELHSTLHIGARALSRTCGIPLTAARDVVQACPHCNSAPAIGSGVNPRGVGPLQI
WQTDFTWEDRFSPRRWLAVTVDTASTALVATQHAKANSTSAQAHWAVAIAILGLPAQIKTDNGSCFTSRSTQEWLSRWGI
QHVTGIPGNSQGQAIVERANRLLKDKIRVLGEGEGYKDKIPVGRQPEILARALYALNHFERGDAKRTPVEKHWQPKILEE
GPLVKVKTNIGVWEPGWRILVWGRGYAAVKHAESGRVVWVPARKVKPDLSKEDDNVEH
>SFV1-20_Gav_gag#LTR/ERV4 21-1919 (SFV1-1_Gav_gag and SFV1-16_Gav_gag near-identical with errors)[Crocodylidae]
MGGLESELIRHCPWRSGSRPTNDPDDLWAHIVYHQAANPATSTVNGYLSLRGIGGKEWAIRLNASAFGCVMRDPRAVYRP
REETGSVSLARVKPSGVASPSPAQEFARCVRYMKEGGEDTPPDRFNCPSLTLGSRGHELVTQLREKLETDGRKAAKWTGP
KWKKGKMLNVLFQEYVTVLRENADLAVQLETAARAVTENAAALPLQDGADRGRNSSEAGDPVPKSVPTLTPPTWSPPPAA
APPTTSTSPPPYGQTRHLEDAKANGISETESDGKSAMGERATAPVQDTSAEDQVYPELATALPISVRKRVTGPQGQGTQI
TVTTRTRTRAEMNELRKETGIKPEETPIVWLGRLIAEAGNETVDEGEAMQLVRNTAWSKGKVVDPVPVLANNYWPIPLPA
LVVEALQRKVHTWHEGASNHADASALVYAILGSSYASWNLAQQALNLTPAQAQGAWPHRFATNPGNVPCLLEAVEAATEV
YGGSQNLTARLLLNPSVNGPVAHVLGQLGKLQGAMRPKAQKTAFPVVDEELNIPSAYPAEYTPTRPRPRWVNQRPQPRDY
PRPQARDSPPLRTPVERAMFGFLLYKSGLTKAQLRSLGDETQKALAHALGFNETNTSQKTSSRRRRRHGDWRR
>ERV2X1_ML_pol#LTR/ERVK 2623-5391 [Myotis lucifugus]
RIRKRAARQTISYPHVHPAREKWVRIRRAAAFSLRALVVSLTQKKTAAKITWLSNDPIWVDQWPLTGEKLQAAQLLVQEQ
LEAGHIEPTYSPWNTPIFVIKKKSGGWRLLQDLRAINKTMEVMGPLQSGLPSPTAIPLNYELLILDLKDCFFTIPLHPDD
CKRFAFSVPAINFKEPAKRYSWKVLPQGMANSPTLCQDFVDAAIHPIRQQHPQAYIIHYMDDILLAHENVDTLHKVFADL
QHSLLTMGLCIAPEKIQKSSPFQYLGSLIEGRTVRPQRLQIRTDSLVTLNDFQKLLGNINWVRPSLKLTTADLAPLYDIL
RGDSSPSSPRQLTAEAGAALTKVEAALQAAQLTRVDLTKPLQVLIFPTTHTPTGVIWQDSGVIEWLYLAHSPTKVLTPFH
DLVSQLIAKARYRLVQLVGQEPSLIIVPFTTAQQSLLWQNSINWQTALANYPGQIGSHYPANKILRFLSLTTFIFPKIVK
QQPLPQALTVFTDGSSSGKAGFHSVKGSKVIQTNYSSAQRVEIQALVYALKSFAFEPVNIYSDSAYVVGMATIIETATIG
YTNSEELFHLFITLQRVIQKRQFPCFIGHIRSHSGLPGPLAAGNEEVDRLVASVEETTPFSMAQASHALHHQNASALRKE
FHISREQARQIVKQCPQCVIHLPVPALGVNPRGLKPNQIWQMDVTHVPEFGRFRWVHVSIDTCSRFIFATPRTGESAKHV
INHCLAAFPVMGRPLEIKTYNGPAYASSSFQKFCKQYQIVHKTGIPYNPQGQAIVERANRTLKTQLQKQKGGERYNPTPQ
NQLNHALYTLNFLNCDDEGHTAAERHQTPGVVASAGMARWKDLQTGQWRGPDPVMKWGRGHVCIFPEGASNPIWVPERAV
RHHHGPGRTTHPTFQEAEDHISGDDASSAIGPKEGEKSKAAG
>ERV23_MD_pol#LTR/ERVK 3275-5944 [Monodelphis domestica]
SRLWVTKFFIKATGPPAPQADKITWKSDSPVWVDQWPLTSEKVQAAIMLVQEQISLGHLEPSTSPWNTPIFVIKKKAGGW
RLLQDLREVNKTMIPMGALQPGLPSPTAIPKGFHKIVIDIKDCFFSIPLHPQDCPRFAFSIPIVNQIGPNPRFQWLVLPQ
GMANSPTLCQKYVAQTIDPIRLRFPSAYIIHYMDDLLIAAPSPQLTQTIAQTITSALQDRGFKIAPDKVQVQYPFSFLGF
RLETDHLFTHKVTLNRSTLKTLNDFQKLLGDINWLRPYLALAKADLRPLEDILCGDTDPSSSRSLTPEGEISLQKVEQAI
AKQNIGYFSPKDPLYLIIFSTEFSPTGLLWQDPSPLIWLHLPLASRKILIPYPDLVAQLIMMGVRLATRHFGRQPDHIVS
PYNKEQLRWLQTQNDNWAVLISSYXGTIDNHMPSNKLLQFFTLTPFTLTRITQSSPIPGAPTIFVDGSKTGLAAIVMHDY
PHTVHTPYQSAQLVELYAALTVFISLPESPFNLYSDSRYVVQSLLRLEATPVIQPTTATFFLFTKIQQAIRARSHPFFIG
HIRAHSGLPGPLALGNDLADQYTRLAALAVPTIPSLDPISLATEAHKLHHLNAHTLRLAYKITREQARAIVKSCKNCLTL
LPEPHLGVNPRGLLPGHLWQMDVTHVPSFAKLKYVHVSIDTFSGFLFASAQSGEATKHVIKHMFLAMSVMGRPLTLKTDN
GPGYXSRSFKQFCAQLGIKHITGIPYNPQGQGIVERANQTLKNTIFKLKTQETLYPLCGNQTTLLAHALFALNFLTLDTE
GRSAADRFWHPHTTSNLAQVLWRDPLTGRWNGPDSVLTWGKGSACIFDKREQSARWIPSRLTKPFSPDNHLPPGSTPEKN
LPSCLTGNA
>ERV7_MD_env#LTR/ERVK 5304-7064  [Monodelphis]
MIFTIITLMDTCHAEVYWSIIPKPPILRMLTWMDKPPLVYVNDTKWLPYPILAKDIPLESEGASYNYSGSTVYPPFCMST
IHTDKRNSFCIPRRIQAWIVKNATDNNYIGIGMGVIGKGDRTSHPPPHKPNHPENKKLCSNQIETLHRDLSWTDCSVQTP
RKVKMPGKVDFEIYNWGPKLHCGFYDLLTHLNRTRGYERWHIPCTTQHKIEEFPQADISGPRLAIEAGPIQNTQWKIMAA
TQSIHKFKVNIMNSGIDFENATHINITACVFAPYVMLVGNTLNISINNKGLYEIQCLNCHLHQCIDSMHDNTYIAIMYQP
PLVWLPVNLTETWASTPTVHFVQKAFNIIMHRSKRFILTIIGAVVSIIAMITALTTATIALTNSIQNQGFIQEIVSNSSE
LWHTQQSLDLAFKDELETLKDAVFWLGKEVEALHTRITYPCHFNQTGYCITPLKYDNVSYEWQSVVEHIKGAWGHHNSTL
DIIHLQQEINKLDQIVYEQEAVKIASKWEATLASMDPRNWFGRINLTNIGNIIIFIIMVIGLIILCRKGCINKAYIRNMQ
PEVALSHHSHHSHCLIHDDIELQSLRM
>SFV1-18_Gav_pol#LTR/ERV4 1808-4864[Crocodylidae]
KEKKRVVAVGKANGVTQEINIEDPRPYADLTLIDPANPHKRVCVSFLLDTGAQVSVITAHVPHQVTKKVIMVQGLNAVKS
TPVIRFLVEGHRKALTGVLGGINLLGVPAIRALKLKEQVLQVLPLAVSPDNRHRPPLRNATAWRYRPIPTKAPLRASLQT
LLSRLEQEGHITPIAESIYLSAGWGIAKPGCPDKARLIVDYRMANKHCASIIQPNISDLPQQLHSIAEYQSEPWVGVTID
MKDMFFSIPIDDHLGVLNMCIEGRMYQWNVCPQGYCNSPALATEAMNRCLHKFKQSQQFPDNVLLCSYVDDIAVLGRDSL
TVTSLTQRLVQYLTAAGWTINQQKSRLNPSDDITFLGTRFTGPWRRSHKPPNNLISPLINRSNHNPPSRKDLQRMMGRIN
WLRHYVQPQSLPVLAQIQKRLRHVRPLTPWTSKEDQAVQHLITQCEGTKLHAINLANDLTVAVGYTDAHIWATVHDQDHL
VLAAHRTLQDAQHRYGTVGKVLLALRLAKPVSKGHGXILGPGMTLLTQVDSDRVNPAFNGEPKTWTDLTLDYQYHWSASW
EHRDTPTPSEVRNRPILYGTTASAWMASDGTTRHGGLSGWYCQACQEKGVSSASKSAQLNELIAFCKVIRHCHKFHNGSQ
PVPVIAIDSQFIYKIVTGDADPDDYGDTWEKIFAMIETLDPPPLIKHTRSHRPDTDPVHAEVDRLLQDGEHMKACINRAH
TIPEEKNVDPFLHWLHEHWGHPGVSASHNRWCKATAQPRFEGTRKDWTRIVQACEQCAKEKKHPTAMERETFAKEHFKPG
KVWQVDLLGPLPGTKRNPKGLVAVGLGTRQVQVIPLQKSTGPSVVTALKLLIARWQAPEIIHSDGGPPFTSKLIGDFATA
YNIQWHHHIPYHPESNSVVERTIGLIKEKIRLLNKGSYTGWDTVLPNVLISLNADKPLWEHRSVTSPKPWTPKFLPDELI
WVTTPDPNDKHPTPTKGKIITPGQYPNTYWVIQNLDNPDVPHLLAHHNWLSRRAEQKVM
>SFV1-3_AMi_gag#LTR/ERV4 33-1886[Crocodylidae]
MELELVKNCPWRSGERLTSDSDELWAHIAYHQAGGIGLNAVTGHFSLRGEAGEGKEWSAKLDVRALGCVMSAKGVVYRPG
DEAGILSLHRVKVVAAAKVTAGVDPTPAQEVARCICHVREGGEGTPPDKFNCPTMVPQYPSHKLFTQLRENLETEGRTAT
KWAGPKWDKGKMINVLFRAFVNATRDIENLSSQLLTLGKVAAENAAAQQSPTPSPQYGAGEKISFFKEPEKKGGASEKDA
EGGVGGGPRLPHSLRECNGAGPTAPPLEHQPPPPYDEKGKTPKSIYPPLPTENPPPPMKSSPTSMETAFPITVTKYTTDX
QGVTHATSTYRTRNRTEMQDIFQLSKIKPGETLAIWLGRLVVEFGSELLDMEEASFLIRQAAWSGGHATDRGPIMRNQHW
AIPLPALLARQIVNKSHLWHNGRPEIASAEQLLLAIIGTSYCTWDGGPQPVGIQHNRFGLTEQQAAGPWPHRFLTQPGMV
PITPEALEACIDIYGGSHAITLRLLLTPQIDGQAGNILSQLGHIQTLMKPTAMTQGVNCATEPDPSSAYPVKQPEFNRPP
YKGSQPLPGRTPEEKAMFWFLIKESGLTKQQLRALRDDGQKALAEKLGFNYTQKPKNG
>SFV1-2_AMi_env#LTR/ERV4 4883-6602 via tfasty with SFV1-6_AMi_env, 1 frameshift. [Crocodylidae]
MTAESHRGRQSRRVTSSCRDPGHATATDAERERVIPGNIFMFGLLLTNPILIFPLGVEGPSQPNTVLTLLSVWADVIGDH
SGGDGLTACLPLPLSVDDPVLVPYLTPLNVTDWFETRSREPCTSINITSGELGETTSYGWPANFTFAHFNTTGKNCTYTS
IVRVGANLPLPCSQVPWGINPQGMDWSRPDNSLTWDPRTITPPWYLTLPPCYANCTGTCNRCPLLPGPLPRVTLSPLHKP
PPIVTWNASLAVNVSNNQTWYSFYYPILRAALMSSACHGAKLSVKPKRAWQTSYFSGNCAQLSTPAPLGMLWACSDGHLY
TALPATLSGIQCFLTTVSLCPPLYASTSRPPSPMLLHRHARRTPVWSELTDKEKFNQKFVWALEGYFAWGIGIGKARVAI
AKLAEQVELLANSTETSLRLLNQQLQATSHMTMQNRLALDAMLLHLGGVCQFLNLSREHCCISIPNVTIPLEDQLDRIKQ
IAADTNNVAGIGKGWLADIFGWMGWDTSSWLMHLLTPLITLCLPLIVIAIVVCMGCCILQFVKERFVKLSAYVYTRLPPE
SCNDDEFLDENYL
>SFV1-7_AMi_gag#LTR/ERV4 0-1848 via tfasty with SFV1-4_AMi_gag, 1 frameshift. Starts on last base of LTR.[Crocodylidae]
MASRTGSKGNVVEKNLIRCCPWRTGGRRVDNAEELWAHIAYHRAAGGEGENLLGGYFSVRGEGPIVKEWKVSMSPEAFGC
VMASDRIHFRPVDAVSSLSLAEVKTKKVEGPTPAQEFAQCMRYLREGGEPTPPDRFNCPALAPGSRGHELLGQLREGLET
EGRQAAKWGVTKWNKGKMINMLFRAVTGLLRENANLEAQLRTVGMESLEQAAGGSEPPLENGAGENEKGRENAEPPQGGW
SAASPPSAPPPGKGAKEEKGREKMGAAQGEWLATPPTLAPPHDVAPAVKPPPYEGEKLYPVLPSDAERPSPTAAHPIALV
KHVADAQGTTRTTITYRTRTRPEIQELCRESKVKPEETLAIWLGRLIVEFGSDILDSEEASALTRQAAWSGGRATDLNVI
TENTHWPIPLPALVVGQVTHKSHAWHEGRPQKASAEQLLLAIIGVSYLSWNPRVHPLGLAQAQRKERWAHRHLPNPGAIP
TTLEAIDACVEVYGGTDAITLRLFLNPMAGQPAGNLLSHLPRLQALMKRSEETPIDANTRPSAYPVETPKPKRPELNFQR
ESRQLPSRTPEERAMFGFLLNHTKLTKQQLRALGDEGQRHLADAMGFKFGDKPKNE
>SFV1-12_Gav_gag#LTR/ERV4 1-2083 via tfasty with SFV1-19_Gav_gag, 1 frameshift and 1 stopcodon. [Crocodylidae]
MGGEESAVIKGCPWRSGVRQINGPDDLKAHNIYHRTADSVEPMISGYLSLTGTSEGEWAIRLNSGAYRCLMQNPQAVYRP
EEESGTASQASAKPPAAASLSPAQEFGRCVRCVSEGGKETPPDRFMCPTITAGSRGHELLTQLxEALERDGKKAKWIGLK
KWKKGCIINVLFREYLTLLGEFIEQGKQLKTATQALNKKSAERPLQDGADKKGSAPKAPPTSRHQAPPPSLPPATAPPMV
PPPPAWDPPPTPPPSPVPAPQPPPRRYRPPTTATSTESAPPPYINQHHHEEVQRISTSNDMTATEEREDDVTTCIRNTDM
QTTTNPRSNTEQDIEARQTDDLEITTAYPVAVRKVSAGPQGQNQVTVTTRSRNHLEMNELKKETSIRNQETPIAWLGRLV
AEAGSETLDRDEAMQLVRSADWSRAKVVDPVPILANQYWPIPLPSLVAEALQHKIHCWHEGATVRNTTATTLIHAIIGAS
YALWTPAHQPLNLSPAQVQGAWPHRFVAIPGDVPCLNEAVQAATEIYGGNHSITARLLLNSSINGPAMHTLGLLDQLQGA
MKTKSQQDAYPVTNETHDSTTVYPIEKSPAYFQRRDPKLNQAKGFQQTRTPQMRRYQSHESPYQSRKHSFRANYSPPQRS
SWERAMFGFLLAKSGLSKEKLRLLGDDGQKDLAKAIGFNDFHDKQKNE
>SFV1-7_AMi_pol#LTR/ERV4 1848-4898[Crocodylidae]
VTAXGSAGGPLHPDSADPRPYAEFIVQHPRNPNDRRRVSFLLDTGSQVNVVTSTTPHMLTSKTIQVQGLNAVATTPKVRI
MIQGNILEAVLGNINILGIPGLRALDLKRRVLQALPITVPESDRHEPKLRNTSVWRYRPIPTKGTLRESLTSLLQRLENQ
GCIARVMASTYLSPGWGVAKPGGPNEARLVVDYREVNKRCQPLAQPTQSTLPQCMLEMAQYQADPWVGVTLDLKNMFFSI
PLTDPDGVLNMCVEGIMYKWTVCPQGYRNSPSLATGAMNRTLETFAATNDNLRNEEYKIWNYVDDIAIMGRNTTVVRETA
TRLVNHLQKDGWTVNLEKSHLHPTANITFLGTTFDGTTRRGATHGPPDLEPLIHPLPTDRRSLQRLLGHLNWYRHYISPL
HLPIVAKLQRQLREKTRKSTPWTARDDDHLRRLLTAIKNTSLAAINLNEPLVVTLGYAATHVWATAHNGRDEVVFTAHKT
LQAAQNRYGHLAKTLLAGQLAESLSSGHGTLRAPLATLIPSVDPERIDPHFQGEPKTWNTLVLNHHYHWHCWKHEDATPT
PDPADNHPPVLYGTTAPAWIGSDGTSRNGGGYGYYCKPCHDAEMFNPTPGEDSPQLCELLGFKAAVQHCLDHHDGTLPVP
VIAIDSLYIYKIVTGTATETENRSVWKDIREAISTFTTPPLVKHTRSHRPDTDPVHSXIDKLLEDPLRRDVVLAASAQGA
SPEADPFLVWLHERWGHPGPQASCRRWKLKAQGPGPYASQADWRRIAKSCEACAKEKCHRTNHHVGALNPEHFSPGKTWQ
VDLLGPLPGAKPPNKGLVIVDLGTRQLLVVPLRKSNATAVITALTAAFAAWKTPHEIQSDGGPPFNSNALDRFARLHGVT
WHLHLPYHPQSNGVVERHIGLYKEQLRLRGGGTYKNWTKYNHDVLIALNTTKPLWDEAAPRKPLPWEPKFQPDELVWVSI
PHPRQSRPVVHKGMVRKSEPYPNTYSVLLEEKPDRPLIIAHHNWLTRRTPPTNVPDN
>ERV23_MD_pro#LTR/ERVK 2478-3305 [Monodelphis domestica]
LARATTGSAGLDLCSSSTRILTPEDGPEVISTGVTGPPPPGMFFLIIGRALTTLQGVVVHPTLVDNDYTGEIKLIVESPH
GPVTIPAGHRLAQALPLPMVGDFPTIEQTRGPSSPGSSNIYWAQQITESRPTLQLSLDGKKFIGLLDTGADSTVISHKHW
PCAWPLQPSTTHLSGIGQVNHTLQSSKFLTWRDAEGNTGTTRPYIVKGLPVNLWGRDILAQMRLLMVSPSDPVTQMMLKS
GFLPGKGLGKNEQGDPQPISLTPNRDKAGFGSQNFS
>HERVK3_gag#LTR/ERVK 212-1777 via tfasty with HERVK22_gagpro, 4 frameshifts and 2 stopcodons.  [Primates]
MGQNLSVEEKHYVQLLKVLLKQSGAQVNSQTLTKMLQEVITHNPWFPQAGTPDVENWHRAGEGLKQAHQKGLKVDSSAFS
TRSLVHTVLLPLYPFYSAGQQESCSESKNLKESVVPPTAPIENKKQEREDKNWPIPPPPVAETSVPPPSVAEIETSIQRI
LCSAAIAGEPLGPLHFSYFRKACPNNPQQFIHEHSPLEFTLLKELKISVINNGIQSPFTLGLLESVFGAMRLLPFDVKHL
ARTCLSATAYLTWNLNWQEMCADQARQNHASGHGDITEGMLLGNGPYSDLACQMALPDPAYQQCAQAAMHAWATIPEERV
PVQSFLHLMQGSQEPYVQFLARLQEAVKHEIPHTAGTEMLTLTLAFENANADCKRALAPVRCNKTVGNFLRTCQDVETEL
HCSAILAQAMANLVVDKSKRSRRSNPKVGKCYNCGKTGHFKKESxLISGQKGPYNVVPSTPMAQRKKTPGLCPHCNKGNH
WAIQCRSKFHQNCNHLSGNEKGAWTRAPQTMRAFPVQTTTP
>GibERV1_pol#LTR/ERVK 2618-5299  [Hylobates]
STWFGFSPRPLILAAPLTADAIQWKSNEPVWVDQWPLTQEKLLAATQLIQEQLLAGHIEPSTSPWNTPIFVIKKKSGKWR
LLQDLRAVNATMLPVGALQPGLPSATAIPKNWPAFVIDLKDCFFTIPLHSSDKVRFAFSLPSINFQQPMARYQWKVLPQG
MANSPTLCQKYVAMALQSFRAQFPHIYCLHYMDDILIAGEVFAELRQALLFLQQHLPTFGLQIAEEKIQQTFPLIYLGQK
IAETTVSPQKIQFNLSKLQTLNDFQKLLGDINWVRPFLSLTTADLLPLFNILRGSSDPTSPRTLTPEAKLALQLVESAIQ
QAHVSRIDYTQPLLLLILTPHLYPTAVFWQHSPLEWLHLPSTRHKTIQPYAELVSQLIMAGRKRSHQIYGKDPDILTVPF
TQQQIVSLYQFNLPWQIALSNFTGQLSTHYPKHKLLTFFQRTSFVLPLHHCHQPLAHAHLLFTDGSKTGVAAVIADNRPF
RFPTTYSSPQRVELFAVCQALQMFPSEPTNIYTDSEWVFRSSTHIESATISSLLDDELYQLLSLLQSCCRQRTAAYFVGH
IRSHSLLPGPLSAGNAAADKLCFLTENAVQRAANSHAIHHQNAHSLRLQFKITREAARAIVKHCSTCPQLQPVPHYGVNP
RGLQPLHLWQMDVTHYPPFGKSSYIHVCVDTFSGFLLASARSGEAVKDVKAHLLYCFQTLGIPRQLKTDNAPAYVAKAFH
SFLAQFNISHCTGIPYNPQGQGIVERAHSTIKHQLEKIKKGELYPRTPANYLHHALYVLNFLRLDAAGRSAAERFWHPEA
STKALVRWRDPLTGQWHGPDPVLIWGRGSVCVFPEGSDGGPRWIPERLVRHAERISGEPDEKPQSAHSPEQPSGSSSRSS
SPSSAPSPSCLGNT
>HERVK9_pol#LTR/ERVK 2365-5094  [Catarrhini]
MAAIVKPPEPIPLKWLTDKPIWIEQWPLSKEKLEALEKLVTEQLENGHIAPTFSPWNSPVFVIKKKSGKWRMLTDLRAIN
SVIQPMGALQPGLPSPAIIPKNWPLIVIDLKDCFFTIPLAEQDCEWFAFTIPAVNNLQPAKRFHWKVLPQGMLNSPTICQ
TYVGQAIEPTRKKFSQCYIIHYMDDILCAAPTREILLQCYDHLQNSISHAGLIIAPDKIQTTTPYSYLGTLVNDTTIVPQ
KVTICRDQLKTLNDFQKLLGDINWIRPALGIPTYAMSNLFSILRGDPSLTSPRQLTKEAEAELQLIEKQVHKAQINRIDP
EKTLDLLIFSTQHSPTGVIVQEQDLVEWLFLPHTNSRTLTPYLDQIATMIGNGRTRIVKLHGYDPGKIIVPLTKAQIQQA
FINSLTWQTHLADFVGILDNHFPKMKLFQFLKLTNWILPKITKFKPIEGAENVFTDGSSNGKASYSGSKSKVFQTPYTSA
QKAELVAVIEVLTAFDMPINVISDSSYVVHSTQLIENAQLRFHTDEQLMTLFTQLQTAVRSRMHPFYITHIRAHTPLPGP
LTEGNQMADRLVANAISNARHFHNLTHVNASGLKRRYSITWKEAKAIIQRCPTCQMVHSSSFTGGVNPRGLEPNSLWQMD
VTHVPSFGRLAYVHVCVDTFSHFVWATCQSGESSACVKRHLLQCFAVMGIPASIKTDNAPGYTSQALATFFSIWNIKHIT
GIPYNSQGQAIVERMNLSLKQQLQKQKGGNREYGTPHMQLNLALLTLNFLSLPKGQMLSAAEQHLQKPAAKTEAEQLVWW
RDPITKSWEIGKIITWGRGYACVSPGQNQQPIWIPSRHLKPYHEPDAEEEIPGGSQRTPGCSHVETDAEEDPNCHEQHPS
NTATHLGTDQEAVTDGGRKPEESGTTSHNE
>MERVK26_env#LTR/ERVK 5286-6908 [Muridae]
LLPRPCALHKPPSPLFSWLFFVILHANSAAAQPLLSLPNTYHWRFYARETYNGHNKVIGTQDCPLEGCRTRIEIPLHPDS
ISTTPSPFLCFPYRNTGECLQEVSTYGGCRYWSCRMESTSHGGTMLTNLKTHFQLSIGDPWDERWRTGVMGKLYPNGYAK
YPVADLHISRELVPASKSAFTHANIIQQENQSQKELRATLSWLQYIQYAADLLPLTTHPNSSQCFFCASLSRPLLAAVPI
NISLHDLHGTLPTRKAQDIPLFDLPPPLCLVGPSSKPHLTCVRDITITKSVCVNPPALLWCKGTTGACINPPFQGSCTPV
IIVPQVYLYEPEELALQMGESRKKREIFIPLLIGLGLAVSLGATGTAGAALVQTQHLASDFQDKLDQAMASTTDSLESLQ
RQITSLAGVALQNRRALDLLTAEQGGTCVLLGEKCCFYVNESGLVEQDVQMLKELXGNLRARYTPNTPTPWYSNPLVAWV
LPLLGPILAIGALLLLAPCLIQFLKQQMSSIAKITTNQVLVQYQTVPDIGDSYSGDTSPL
>MacERVK1_gag#LTR/ERVK 331-1851  [Cercopithecidae]
MPLTLWTLCSSITQALELLETDSERGDTATGGEASEALERNDPREEHIYAPVVEDKELEKELMPPSSEGNSDLQRILEML
QQLLKLQGTAAPVSPISPPRAFPVTFPSAPLEKDFPLPPPPTSLPMSGQVFSVPLPPVGEKKESKEKDDFEELDLFPITR
AAFGPNAQFPNGGQNVTFTALQFKFLKEMKAAISNYGPQSPFVLGLLDSFSSEHMMIPIDWETLGQAVLDRSQWLQLKSW
WWEEARVQARKNATRNPPGPTEEQLTGSGQYATLNAQAGLDDIALTQIKALFIKAWTKVEIAGKTSLSFVKILQGATEPY
PDFVARLQDAVLKTVGSGPAAKILLDTLAFESANPECQKLLRPLKASGADLXEYIRACAGVGGAIYNAQLFAGALSKALK
GNSKQGICYQCGKPGHFKKECRKKLGSSALKEKRLPSDMCKRCGKGRHWTNECRSKTDKSGNVLSPLSGNGSRGPQAWGP
NNYNAGLPQYPVSSGLQHQGMTSSPP
>GibERV1_env#LTR/ERVK 5130-7093  [Hylobates]
MADLGGFRRGSSGMRNGFLVSRMRNLSLHTPPSSPPGVRRGAPRRRQRPRRLALETRNSPFPTWGQIKRLAVTAQDMLTT
EGKPFTPENLFLAMLALLSFQVLPTEGKTYWAYVPEPPLLRPVTWNDANVPVYTNNTDLFGGLDGDFIIPVSTIYNYTGS
TATLPICLSFTPMAGCLTLGREIRRVAGYLPTALHTIVQWRLSFWGFSTEAVAPNSQHPPHVLPPCPVVRPGQHVVSKYP
VWQSCAYLPGTQHQIPHYDINLTDWSRPYAYLPPISGTRNVATGDWTMPIITTQKGRVQEHIWRAAAALGXVEFLYPEQT
TPEQTTHKRVRTGLRACVRAPYVFLSGPFNITVQVHMGKLVSPHLAHSIPHQGEKEYIIHCLHCNLTNCVTRDNFNLTLA
ILQQPPFVMLPVHLNETWYTDPGFAALQIVVESLTRTKRFLGLLIAGIVALVTAVATAATAAVAITXSIQTAHFVNDLAK
NTSTALGTQERIDLKINAKLNALEEAVEFLGMRVEALSTRLPLKCHADYEWICITAHEYNQSQWSWEEVQAHLHGVWSAN
NFSLDVASLHNEIQKMQQAHLDIVNPKDVADSILSILHKLSPTSHLSAIIISLATLAGIVLLILCVFPVCLRGAFSAITQ
LRINHQRLLLERKGG
>ERVB2_1A_MM_pro#LTR/ERVK 1677-2564  [Mus musculus]
IKVPQGWNSAHQRSGTAKKLDEGLPLSPEKREAQSQEEGREPAPLNPEAPEFTIHHLPRATPGSAGLDLATLTDVIISSW
DGVHLISTSVSGTLPPGTVGLIIGRSSNFKKSFEVVPGVVDSDTLGEIKVMVKALKETVQLHKGQRIAQLLLLPYLQLPN
PTLKGEXGRGQFGSTDAVAWVQEINDQRPFKNIIVNGKSFXGLLDTGADRSCIAGKDWPSSWPVHRTSSTLQGLGMAANV
AQSSQILRWKCEGKTGHIQPYVIASLPFSLWGRDIMEEMNVKLVTSDNSNWQNFS
>ERVB2_1A_MM_env#LTR/ERVK 4998-7062  [Mus musculus]
SLRGEDMHVSFHRMPNPPSGSRTDSSGRPRPSRAQRLAKKRKRKQKERALAAKMKKLSLSPPQTAATGAALVPSWEQLRK
LTREAEGMVQRTGKTLSSETMFLAMLALVATQVTAVAGDSFWAYIPKPPLLHPVGWDEQNHIKVMTNNSELMGGFLDFGR
DHRTSKRFYYEGRSDVAPICLALKGPVPIGCLPVNYRSFVTDAPDYENKFQRWVWKLRIQTLGYDNYSETSETVSNLPIP
DCIELTKDNDKDYTWNSMVTKYPLWLDCGFKYSATVFHPRGTQDSVTDFSVPNPHANLTRYFKQXSDIRFHGFDPDMGNE
PLKRYSTLGFIAPIWVGRSIAHDTIAIQPELFRLVAATNTIFLKEPKALVDSPIYVKACVPYPYAILLGSPDRVKITNLG
KSFYIQCXSCQLTNCVEPNLDKXSAIMILLKRPGYVLLPVELGNDPWFENSGLQALKRLNELIRPKRFVAALILGITALI
AILTSFTLSTTALVQQQHTAHFVNDMHKNISVALSELYFIDKKLEAKVNALEEVVLAIGQDIANIKTRLATKCHASFQYI
CVTPLPYNATTDWEKTKTHLQGIWKDTDISHDLEQLKVKISDISKSHLDTWNIDELARDLKNNLSALNPLDWVQYIILLV
IIFGITLLVIIVFPLIFRVLLKSVATTKRDILELRLRNKDKLKKNKGE
>ERVB2_2-LTR_RN_sag#LTR/ERVK  43-893 via tfasty with MMTV_sag, 1 frameshift and 1 stopcodon. (clear nucleotide similarity only between ERVB2_2-LTR_RN and RLTR3_Mm (the MMTV LTR) starts only at pos 550) [Rattus norvegicus]
MTPEWEPVRRFPPHVVKPPACMRRTPRRCAPGLAPCYKLGSGLMGIWVMGKIVVSTYFFIFSLFDSEYDLGKTETSFNNR
TEGHDLFLITNTTSFPASSLQQTEPLMTGTPRLQIMSSLIDKEIxDLTKNYTYKDSDASSIRVLVELLRNDSLSFGSAMN
ILQSIGNRWWQPGTYRGPYVHRPTDAPLPYTGEYDLNFDRWVTKDGYRVRYLSLPWSERLARARPPWCVLSEEEKWEVRS
QIIRYFRQGSDIQYYCPKSWMYIYRTNKDGIKGLTRAIELDAQT
>ERVB5_1_MM_gag#LTR/ERVK 254-2455  (ERVB5_1_MM_pro, pol 97% and 96% similar to those of RNERVK22) [Mus mouse genus]
MGQAFSKQSLFVSGLKESLKTRGTRVKKKDLKKFLDFVGDICPWFPQEGTIDEKRWRRVGDCFKDYYEAFGPTKIPVTAF
SYWSLINDILRTTPEWPDLQHLVSEGERSLKESVSRPPSANLATHTPPLSPLREGPLSAPPSVADGVSDLPPLPPIKDLS
LPPPREEIKTADPYPSLIDLDNDLPPADEATLEEEAARYESERYRDPPKAATIALASAPPLRGAAALPSFFPPPPYGTLD
AVFDPPAMSGARRQLTADVASLRHMVETRKEQVQLLRALQSLEAELLDLTPSPQQLPQVSVKTKKDQKKRVLAFPLSLRS
GTTVPRDSPSPKTDLEESQRASEEEGETDDELQPDSQETEDAPAAPPVEPDDAPPRYHYQPLDFKILEKLKAAVSNYGPT
APFTLALLESSTEGWLTPKEFSQLARAALTGGDFVLWKSEVAETAKEIEIKNRARPDTKSWTARKILGEPPYNTLEAQML
FSPGLLAQVRQARLAAWKKLPPKSGSSAALTKVLQGADEPYNSFISRLTETAERLFGVQEPENPFIKQLAFENANPTCQD
ILKHHRSKSLAEYVRLRAGARTSHAIGLAIGAALQRAGLSNSQKTCFNCKQPGHFLRECPHPRQSRRPPVEGQGDAPPAR
ALPTTLCPRCHRGRHWANECRSKTDSQGRPLLPRHSGNFLRGQPPAPTSRTGPGAIGFVPQQISHHTPSPLPNSGELQKT
AQDWTSVPPPAQY
>ERVB4_6_RN_pol#LTR/ERVK 2179-4810 via tfasty with ERVB4_1_MM_pol, 1 frameshift and 6 stopcodons.  [Rattus norvegicus]
RIRLSKFFLRATSPPALHADKITWKDDKAVWIDQWPLSSIKVTAALELVQEQLTAGHIEPSTFPWNTPIFVLRKETGKWR
LLQDLREINKTLFPMGAIQPGLPSPVAIPKGYFKIIIDIKDCFFSNPLDPEDCKYFGFSVLIVNFVGPMPxFQWQVLPQG
MANSPNLGQRYIAQIVDPLHLQFPSLYIINYMDDILVSEKDPEMVHLASQQLIEAFQQRSLQVAPDKVQIHPPQLFLGFE
VFPHKIISQKVQLKRTSLLTLNDFQxLLGDINWIRPYLKLTTGQIKPLFDILRGDSDPTLPRCLTPEVSEALSLVKEAIA
NQKNCLFFPHHPLLFIVLSTPLSPTAVLWQGCPQYWVHLLASHNKVLLTYPLLVAQIIRLGRKLSHKLFGKDPDAMILPY
SPSQASWLGQHTDEWAISCVAFQGKIDNHYPPDRLIQFFHKLSVPVIFPKVTCTCPVSRVHLVFTDGSSYGQAAFSINGK
VHQISAPSDSAQLVxLRAVLAVFETLPRSPFNLYTDSSYLPFSIPLLEMVPYIQPTTNAAPLFATLQKFIHKCTHPFYVG
HVxTHSGLLGSLAEGSDAMDCITQLVALAQEASITPLTLAQQAHDLHHLNVHTLRITQEQACQIDHNCKGCVTLLPDLLL
GVNPCRLVPGELWQMDVTHISSFGKLKYVHLTIDTFSGFLFASLQAGEATKHVISNVLACLVVLPQPKIIKTDNGPRYIS
SSFKNFCSQCGIKHIRGIPYNPQGQGIIERAHQTLKNMIHKLQSNGGILFPLPGNHKKLINHSLFVFNYSVMDKDGKTAA
DRLWHPYTSYDYAQVLWKDPLTSPWYGPDPVLIWGGGSACIYNSKTGGTxWLPKRLVKTFNPPRDNPEEKFNYAxLQ
>4585932_Ath#DNA/hAT-Tip100 gi|4585932|gb|AAD25592.1| hypothetical protein  [Arabidopsis thaliana]
MDSNDSDDLSWDPTKRKSILSYHPDQRDEMTSPPIQKDIMHCFAMEVTKSVIQEINNDVFALLVDESADIPDKEQMTVVF
RFVDKDGIVKERFVGISHVKETSSLSLKNAIDPLFTKDGLSLKKELSLQKPANTRWGTHYKTLLRIIEFFSCIIEYIEYI
QDEDVDNIKRRQANGLLKYFHTFDFAFYLQLMLHILGFADILSQALQRRDQDILNVMSLVASTKREVDYYYNVLDMQLQA
FNDLFDEVNSEILFWIASLSPMDSFSQFKKSMLVRLTELYLDDFSFVERISLDHQLDIYLDNVQRDERFTNFKSLGDLSR
VMRKSAPCKQRWEKVNELVMKFVGCYATVTNQKASDQSKNDVKFWQTNYS
>Crack-9_CQ_pol#LINE/L2 1-2333 Fragment, via tfasty with Crack-7_BF_pol, 1 frameshift. [Culex quinquefasciatus]
HTTSILVVINELDQILSSTTSSQECILLGDMNIPVNLPAVPSVRDYTHLLASYSLAVTNDRVTRPACNNVLDHVVCSGEL
AVNDNQRDHLHLSDHNLIVSFFKSSTPYLKQTHQKQIVDHNKLNEMFIQSMAGLPRSLPAEEKLIHIIDRYNSLRQQCTK
TVTIKAKVKGHCPWMTFNIWKLIQIKESILKRRRRNPDDQHLADLLAHVSRKLQNEKSASKRNYYGNLLANGDQKTAWRV
INDALGKQASRTHPNELCVNGRSTKDLNEICQLFNDFFCDVGPNLAATINSDRNINKFGTITPLRWNIYLRPTTAAETTI
LINELNSKKASGPDNIPVTFVKTHFNIFSLLLADVFNEMLETGNFPQCLKIAKVIPVYKSGDTKDPSNYRPISCLSVLDK
IIEKLLVTRIMDYANHLKIIYEHQYGFQKAKSTLHATCDLVEDIYDSLDRREIDGAVFIDLKKAFDTIDHQLLLEKLSSY
GFRGVARSLIQSYLSDRLQFVAIGESRSSPGLVTTGVPQGSNLGPILFLLFINDLAKLGLRGKVRLFADDTSLFYKGKDC
TTIQQHIREDLEKLCSFFQTNLLSLNLAKTKYMLIHSPRRPLPARQPILINNHTIEEVSNYPFLGLTLDNTMSWDAHIDQ
LKRKLSSIGGVLRKVSSFLPPSALKALYFSLVHSRLIYLITIWGHANCHRLRELQVTQNRCLKTVLRKPHLFPTRQLYED
PDNSFLPVRALHELQMVTHIWKNPSLGQGRMHVNRASRQEGHFYLPRPRSEFGRKKIK
>Crack-8_BF_pol#LINE/L2 3-2588  [Branchiostoma floridae]
TERTDMTQPGLEALFCQIQLPFTKPIVVGSIYRPPNATVDFYSLLRDSLETWSTCTPNSELFLLGDMNIDLSNTDTSGAR
HITNLSQEYQLQQVIDKPTRVLQQSSTIIDHIYCSDLQQVCEHGVVHSTLSDHYAVFCVRKAKRPKSAPRYITSRKFSNF
DENNFLTHLRTLXWDSVLQSTCVEEAWGLFRSLFITVSDLHAPYISKRTKANQPKWLTSDLQRLMHDRDSTKAKARRTGA
TVDWEGYKAKRNHVNKLVKQAKAMYCQQKLKENMSNTSKLWATIKEVLPNKNPVVTKSLHWGGQFYKDPSSIVSCFNNFF
VSIGNKLAEKFTKQTGNLVCPDKYKKLTSTFAFKEVTEVTVYDKLRVLGTNKATGLDKIHSRLLKAAAPCICKPMTHIFN
LSLSSGIIPKEWKTAKVTPIHKGGEKEDPNNYRPISVLPVIMKAFEKEVHGQFLEYLHHHSILSEQQSGFRPGHSTATTL
LDVTDHVYQNIDSGNLVGAVFLDLKKAFDTVDHCLLLKKLSWIGVKDVELKWFTNYLSDRKQTVSLDGCVSDYLPVTVGV
PQGSILGPLLFIMFINDLPDCISNKVCLYADDTAIFCSSNDTRYIEATLNSELSHIATWFQLNHLTLNASKTKWMLFGSS
GKLKKAHPVSIKIGLESIERVVSFKYLGLILDDKLLWNEHVDKLCSKVTQRVGLLRRLRPCFTVNIADMLYKAMVLPLLD
YCDTVWDSCGVGRQQQLQVLQNRAARVVLQLNLQSSSVLNLHEKLSWQYLAGRRRDHVCIMVYKCINGLAPTYLSSIFSH
NHNLHNYQTRQTSLLYKPFFKTTTGQRTFSYRGAKHFNSLPAYIKQVQSLNSFKSALKDLT
>Crack-14_BF_pol#LINE/L2 1-2313  [Branchiostoma floridae]
TATCIDLAFTNCKERCTTTKSTPLGFTDHNIIYLTRKTKVPKTQPHVVYKRTYSKFNPDDFQQDMSMVPWHIVYDESDVN
EALHLFTTLFCNVADQHAPAKRRTVRSNPAGWVDDELREVMRLRDDAKKEALASGLVSDICIYKKLRNAAVKLNRKKKAA
YFKSKIAESRNDPKEMWRTLNGMMGRGHRRSACTVERDGEILTKAGDVADYFNSFFTQKVNSLRAGLDSQTNGDLLQLIR
DKVMVGKDCSFDFQLTHWEQIHKHLLSLSDGKATGLDNVDNKLLRLAADQIARPLCYIINLSLITSEYPTAWKRAKVVPL
PKSATTRLSGPNSRPISLLPAFSKVMEKVVSSQISDYFKVNDLMSPHQHAYRKHHSTCTALLQLVDDWYRKIDQGNIVGV
IFLDFSAAFDLVDHSFLLQKLACYGFSDTAVHWMDSYLAGREQCVHFNGTNSPFREVNCGVPQGSCLGPLLFTIFTNDLP
FAVRETIPEMYADDTSAYTCSPSVETVTVNLQEDLNNICNWVRLNRLFLNANKTMCMLLGSRPKMSKKPKLTLFADGCPI
QQVTTMKLLGSTLDECLTWDLHVEETIKKMARSLGAIRRSVAYLDQSLVKMLTETLTLQHLDYCAAVWASTTQKNITALQ
VMQNKAGRLTLGTNRTPIKHMHNVLSWLTVSERLYVSSMCTLHKVLLAREPSLLYSRLHLVSGQHSYHTRHAARQNLRTE
KPKTNSLKKSFTYRAASDWNKLSHELQTANTSRIFRRQLVKHMRDLAKDT
>Daphne-1_BM_gag#LINE/L2 654-1871 [Bombyx mori]
MTYVLSTMEDNSNVTIRDRRRFMMTGSLSMESTDSLEDAPSSINARSMIDLSTHTMTSHQEVITSLQLSIENLKKQLQTT
RSENTVLKQKLDEQIHINKQLNKQINGTTVSSPKKKNNNNKTEIRAMKPNIEARKLDLDLEFQTPKSSPLVPKDTKVNLS
LSQCDDELLESSHIDRNKPTLKPSGSRRLLIFGTQQCVGLAAKLLKTRLYTNYEKYRITAVTKPFASSEEVFKCCENLNL
NKDDKLVIGVGENDTNPFKLLIELSATLKRLYEVTVIVLRINYNKSLNVSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNK
YIICQKINYIIDSIDYDTKYLSLKNNKNSTLHTIEIKNDTLGNLTKNNSRYTQRTILDYFKKINIQTPNCTSIQALPTNN
NLFFRK
>Crack-18_BF_pol#LINE/L2 1-2541  [Branchiostoma floridae]
MMLDRATCEQQETYVLGDFNIDWIQNSHASKRLKEMTESYSMQQLVGVPTRAVNRGQTVTTSCIDLVFTNQPDKCDNLRL
QTIGFSDHDAVIFTRKSKIHIKGPRTVHKRSYKLFKEEDFLSDIREAPWHLVYNFDDVNEATDMFTDILQGICDNHAPIR
KFTVRSNAAPWLTPDIQEVMKLRDEAKRGAKATGLESDWAVFRKLRNRVVSLCRKAKTRFYRETFESCSGNARQTWNTIN
SLLGRKHTVSPTSIVADGKLLTKPMDIADHFAGYYEDKVANLRSCMDRTDAHGSPENSQSSNSHVLSGQPDNLNVLPGLL
SDNSHVLPGLSSDNSHALPGLSTSDSSHVLPSQSSFTFDPVTDKDVHKILLQLQDCKAPGQDGIDNKLLRISSDTIAGPM
AYIINLSFTTRTFPTRWKHAKIIPIPKDNRQSLSGPNSRPVSLLPACGKICERIAAEQIASYLLRSNCQSEAQHAYRKLH
STETALLKMTDDWLDNMDNGLMTAVVLLDYSAAFDLVDHALLLKKLTTYGFTEDALSWTESYLTNRKWQVYTNGAYSKQR
TLHCGVPQGSCLGPQLYNIYVNDMPEVVQNGLLDQYADDSTIHTRGHTLDDIRTETKIDLERVATWSDENMLKLNNGKTK
VMLVGTAQKTRKAPPLELELRGQRLEQCPTVKLLGLHLDQNLTWDSHVTQIVKKCNRSLAQVGRVKDLLPRQQRIAVVNA
LIIPHIDYCCSVWGNTTQNNIRRLQVVQNRAARLALGCDRYTHVDSMLKTLGWLTVRDRIQQKSLATFERIMLTKQPKAL
HDKITFQSQIHNYRTRSMNTIRLPKPKSNSQKRRFLYRMSQLWNSN
>Crack-5_HM_pol#LINE/L2 977-4047 via tfasty with CR1-27_HM_pol, 2 frameshifts and 1 stopcodon. [Hydra magnipapillata]
MAEISNFKHQAFNFSKMKTLIDPNYSHDLNNDCFYYYPSEIEGSLFNFNNSEQIKILHVNIRSISHNFEKLLYLLEETKN
VFNIICLTETWINANDLSNNANFYLPRFELISQERHTNKRGGGVLIYVKETIAHYVRNDLSVSDGDKEILTIEILNNESK
NVLLSCCYRPPDGLSENLSTFFEQMLSKxALKKKKKFIIGDLNMNFLNYENDCKIKKFYDLIFEIGAIPLINVQLINRPT
RVSANSATLIDNIITTDVFNNNIQKGILKADITDHFPIFLSFNSNSKIKTKTNNKISKRIYNINNIEQFKKQLSLLHWKH
INFNDDANKIYENFFKTFYSVYDANFPICEKTINQKSLNVPWITKGFKKSSKIKQKLYINYLKTKTSLNEKLYKDYKHLF
EKIRKNLKKNYYSKLIENVKNDSKRTWKILREIGGKQKTCSGSLPQVIRVDNKDIFEPRLIAHEFNKFFIDIGSKLANKI
PNTQVVFNNFLTPMDDCICSNNLSSELSFEEFQVSFKSIKKNKAPGADEINGNIVLECFEQLKDILFKVFRASIQQGVFP
DKLKIAKIIPIYKEGDRTNICNYRPISILSTFSKILEKIIYNRLYTYFKEKNFFYKNQFGFKKNSSTEHAIIQFVREISN
SFKNSQFTLGIFLDLSKAFDTVNHGILIHKLKYYGVDGVILKWFKSYLTNRKQFVSFNDPYQKNVLDISCGVPQGSILGP
LLFLIYINDLHKASNLLSIMFADDTNLFLSDNNINKLFTTMNEELKIISSWFKCNKLTLNIKKTKWILFHSITKKRYLPP
TLPDIFIDHIEIKRDCTTKFLGVFLDENITWKQHIDYVGTKVSKNIGILYKARIYINKKVLSQLYYAFIHSYMNYANIAW
ASTEKSKLQSLYRRQKHAIRVINFADRFSHSKHLFSEMRILNIYELNIFNILCFVYICKNNLSPAVFNDLITLKPTNKYS
LRNNNLLYEPFCRTSFNQFCIDYRAPHLWNKIVLPNFNFDLPTSLHLFKVKLKNLFLSRIIKI
>Crack-2_CQ_pol#LINE/L2 882-3779  [Culex quinquefasciatus]
MNLIQHAXNESVDDPSSLRLPPDSTVFKILQINIRGLNRMEKLDSLCVYLHNLNASIDVIVIGETWIKQGRSQYYNIPGY
HSAFSCRKTSAGGLAIFVRNDLNFEARTNVADGGFHHISIKVDKSPSSVFVHGLYRPPSDDTSRLFSAIEEILANSDPAS
PCFIVGDVNVPVNQPHNVNVRRYNQLLNAFSATVSNTIITRPISSNLLDHVVCSIADSTRVSNYTMPCELSDHSYVLTVF
KLKADHQRKVLTKTWVNYALVDAEFQRFLENLNQNSLPVDECLQSITGTYSQLIQANSRTRTVEVKVKNDCCPWYNFDIW
KLGNIRDSILKRWKRNRQDQHLSELLARANYNLSEAKKRAKKQYHTKLFNNGNAKLLWGRINELMGGKSRTNSAPSLEVN
QNIEHDPVTVANLFNDYFVSVGDNLASQLTSDGNINRFNTMKRSNISIFLRPASVLEISNLIHELDPKKASGYDGFPVSA
LKKHRNLLSAIICNCFNQCVSLGTYPPCLKKAVVHPIYKNGNPRDPTNYRPISVLPVINKVFEKLIYARLSNFLVATKRF
YAHQFGFRKGSSTEIAVLEMTDEITKKLDQKMSAGTIFLDLSKAFDTINHEMLLRKLEVYGIQGLPNALLRSYLSDRLQQ
VTVSGVRGNSRFVRCGVPQGSVLGPLLFLLYVNDLPNLVLKGKPRLFADDTAISYYGSSPNQVIEFMREDMELVMNYLDN
NLLSLNLGKTKLMHFRYPKRVLPPHPALTVRNQTIEEVTSYKYLGVHIDNRLCWDVQTREIVSKCASLCGILRKLSTTVP
QHVLLKMYLAFIHSRYQYAVAVWGGCSKTHLSDLQVQQNRCLKAIFKLPFLHPTRELYLMRQHTVLPIRGIFMHRIAVIM
YRTLNNVNLHHNFEFRTAIHQHYTRQAHHLRRSDFRTETGRRRFVVAGPTVYNSLPDEIKQARSLSEVKSKLTAYIRSNV
NNYLLH
>Crack-2_BF_pol#LINE/L2 1236-4364  [Branchiostoma floridae]
MSSRIFDTQGMQCLQMYEDDNLTFNPFLLNDDNESKSKYIDDWDPDVNFFNHAMNNSCQYYTENSFKNLCTELSHTSSTF
SMLHLNIRSLPRNYDSFTHYLSTLQHDFSVIGLTETWLNDSTSHLYDLPNFASLHRCRSNKTGGGVSILIHQSFEFIERN
DLCIQSEEDMVESLFIEILPASHITGKGIILGCIYRPPNTQIKNFISNLTTSLDMINKEGKTCYIFGDFNIDLLKHESHS
LTTDFLNTMYSCTFYPIITKPSRITNRSASLIDNIMTNSTTNPHSAGLLVTDISDHLPVFCITDYEISKNQGVTIGQRRC
YRNFDLKNVNEFKALLSKENWEFVYNNTDANACYCNFVKIFNTHFEKCFPLKTISTKKNLESNNKGWFTKGLRKSSNVKN
KLYRKYLKNPTPTTLQKYKTYRNKFNGLIRSSKRQYYQDRFTTVSNDIRNTWKLINELLNRKKASPTLPSKFMDGEDEIT
NQQNIVNKFNDFFVNIGPSLAKQIDKTDNSPLSYLQNEYPTISLFDAPSTAEILDIILNLKNAAPGKDEIHASLLKKVAS
EIVEPITYVFKTSIETGKVPSDLKVAKVIPLYKSGNSCLFTNYRPISILPVFSKILEKVVYKRILKHLDDNNILYTHQYG
FRKNYSTYMPLIQLIEKITSALENKEFTIGIFLDLSKAFDTVDHNILLDKLNTYGFKGSVLKWLKDYLSERTQYVSNNSF
VSSQKFVTCGVPQGSILGPLLFLIYVNDLPMISDKFFALIFADDTNLFMSHKNFDTLISTINDELCKLNQWFKSNKLSLN
IDKTNFIIFTGRNKKYSKEMAKLHIDNKPIKQVSNARFLGVVIDEKLTWKFHIDIICKKIAKNIGIIRKVANCLSRKIFM
TLYYSLIYPYLTYCNIIWASTYTTSLKPLHLLQKRFVRIASNASFIANSATFFHNLKILTVYDINKLQSAIFVHKVIHNN
SFLPVLYKDIFKYNADIHNHSTRQQNSLRPIKTKSNLTQFTIMFRGPSIWNTLSLSLRNCQSLSIFKKRMKNNLIEKPTI
YS
>Crack-2_HM_gag#LINE/L2 292-1059  [Hydra magnipapillata]
MAVTLVEIKKMIKDLFTKYKVETEAALKQQENNFINIVSANTKILNERLDKVEKNILENAKKISTLATEVEEIKVSLNFH
EELIENKIKTALDSFIKNKPTHNEIQNNNIELKKINSKLREIEDRSRRNNLRVEGVKEDDNESWLESETKVKKIFDEYLG
IKDVKIERAHRAGKEDIKKHRTIVVKLLDFKDKEAILKNSSKLKGKNIFINEDFCAETNRIRKDLREKMKIERQLGKFAY
ISYDKLIVREWNAKKK
>Crack-5_BF_pol#LINE/L2 3-1649  [Branchiostoma floridae]
IITENVEICNECNKFFVDIGTYLANNITSTKQDPISYIKAPTNCSLSLFEPTTNKEVEDIVLNLKDSAAGYDEIKSKALK
SALPYILTPLTHILNMSLQSGDVPNGTKIAKVIPIFKGGDSTSFSNYRPISVLPSISKLFERLVYNRLLKYLNTNNILYK
HQYGFRKGISTPLALIQLIDKISTAIDKNEYTIGIFLDLSKAFDTVNHTILLRKLAAYGVTGTALNWFQNYLNHRKQYVT
LNGIKSTYKEIQCGVPQGSILGPLLFLIYVNDLAEASSILYFILFADDTNIFLSHKNFDSLIQLANQELRKVATWFEANK
LSINTKKTNFLIFCSKNKSYDINKAKIFLQNVPIKQEKQTKFLGVIIDEKLNWKAHVSAVSKTVAKTIGVIGKIKHNIPL
KTLSTIYNSLIYPYLTYCNIVWGCACHTTLHPLTTLQKKFTRMATASDFLSHTAPLFLKLKILNVFDINKLQISIFTFNC
LSNNLPDMFKTFLNPNSHVHNYHTRQRNLLHIPLFRTSLAQSTVKYRCATIWNSLPTNIKKHFFPPYI
>Crack-3_CQ_gag#LINE/L2 773-1531  [Culex quinquefasciatus]
MSLNLAELPELIASMRKDSSNCLKDVVASQQFLSNKFEEIVGHMKLLQNQIQLLRSENHCLKQSIKNLSENAKSITQVVH
QAELDIDCQQRSELSTNAIILGIPRTAQENTDDIVLKTCEALGYSTAKHDMVSCCRIPCAKSENSPIRITFKSAHCKEKL
MEHKKQYGTMDISAIQNQKLPMGTQGRVVIRDELTPLSRRLLQELKGLQAALDLRYVWPGRNGAIMVRKTEKSKAIPILS
RHDIQKLLQTPKK
>Daphne-1_BM_pol#LINE/L2 1864-4764 [Bombyx mori]
FVNNKERNIDCKLTLLHQNIAGILGKIDLLKITLDELYSQNTDIDILCFSETFLKVGEESKLVLRGYNIANFYSRSKQRR
GGVAILCKDYISSKPILWLRDLALEFSFECCGIEIPEYKCIIICIYRTPNSRVQIFLDKIEIVLSTIRNKTNKKIIVCGD
FNINLLKSSNILNEYKRITQNHRFNIHIKEPTRQNACLDKIISNVSEAEGKIHSLGLSDHETGQTVCIPVKYVKKPQKIY
YIRKRDFDEYNINKFIEYVASLSWTEECEMTDLNAAFNSFHDHIVLLYNLCFPFRKIKIDNNKSQKTLWITTGIKKSCVS
KRKLRYSYIKNKTTSSKIKYKKYNKILKSCIITAQKIRNEHHINKSSNICRTSWNIIKQNDNKINSNNKSNIKQILHNGR
VITDTTEIASIFNNYYIEITNDENKNYNNIQAINTQNTNISSSSIFLMPATCEEIYKTIHSLNNTNSTGYDELPTFILKQ
CAIAITPILCHIINLSLTEGTFPDKLKISIVKPIYKKGHKECINNYRPITLIPILAKIFEKIMHSRLTTFLNKSEVIKSE
QHGFQKGKSTTLAAFKLISKITENVDRKIPTVGVFFDMTKAFDFVDHNILLRKCNNYGIRGIAEKWLSSYLSNRQQYVEI
RDIDNNNEEVAFKSSLAYNKVGVPQGSILGPLLFIIYINDLPEHIHYPCSLFADDIAVVITKDATLDLNDEINATVSKVI
DWMNKNNLKANLDKTRYIQFYNRHKFINNLNITYNNNTLNECNSITFLGLNVDNQCSWNLHIDITCSKINRFSYALWRLT
KICNLKTALQAYHGYVASNIRYCIPLWGNSSHINRVFIAQKQCVRAMCNIHPLTSCKPFFQKHNILTVPSIYIQECCLFV
KKHPQLYKSCGEYCQFNTRYPTKLMLPSINTRYYHTNCYPMTIRIFNKIPNSIRDLPLTQFKRKLYLWLIDKAYYSVQEF
LNDKCCT
>L2-4_NVi_pol#LINE/L2 2317-5127 via tfasty with L2-1_NVi_pol, 4 frameshifts and 5 stopcodons. [Nasonia vitripennis]
LDRGRVTGAECXGFRAGFLNATSLYAHMGMFRQFLDTAWPSYHIFGVAETRFGHEVDDVFVRIDGFSIMRQDRNKRGGGV
ALYVRNDYKATLLCSSPTQIEGKPGIPExLMCSVQQGTLTPIFVAVIYRPPGISLENSNFTDDLRNYSVGYDCRIVMGDL
NANMLLASRDAEFFRELACEMNLKLVNHVGDSHTWIDVIFTDDDNVVLNENNSLATFPSKHNIIDVxINFQTVELPALNS
FTYRDFKSINTGELLSLLASCDWSMVNCPDSGVDTRLEHLSQNIISVIDQLAPLKEYKPKKEGLPPWVDAELINQRDAVK
RRHKQARRDTPRRDELxMEYQSLVTEAEERTAQARETFIQNRIFDALDNDKNIWNEFRNLGLITKAKNDLHGFTPDELNA
HFAGVSNIRPRAxDRSDIMSEASEGGFTFREVTFSDVVLAVAHFSSQAKSEDGIPQSVIAKSLPVLGHHLVALFNASLSS
GIFPGAWKGALSKVLEKIVHDQISEHLESRKILDPLQTGFRSNNSTQTALLKLTEDIRTGIDSDKQLLTILLLFDFSKAF
DTISPSKLLRKLIGMGFSRAVVLWVKSFITGRNQRVVTTSNGESDWLTTNLGVPQGSILGPLLFSLYVNDLKDVLTDFER
SERPEELLTNSVAHLLYADDLQTYTQCTRDNLRAGMDRLSAVARAVSGWASDNALHLNTGKTKAIIFGSDYNINQLQGLN
LPGIEVRDGIFVPFVDTVTNLGVVMDSKLTWKAQVDAVSRKVNRTLYGLRSFRSCTTEALRKQLASALAVSHLDYCSVVY
LDVSEELQTRLQRLQNACVRYICGAGRREHITPYRKKLGWLDTKERRRVLCGGVSVxSLLHGAAAVPCGPLKKKQYRTSS
RVSRDISVPGSRTDVGLHSFAVYGASLWNSLPQGVRTLPSLAEFKRALRKHLMRNDL
>L2-3_XT_pol#LINE/L2 1042-4303 via tfasty with L2_Mars_pol, 1 frameshift. [Xenopus (Silurana) tropicalis]
MFYPALLLFALSCFLKHLQPHPPSSQKGITITASLLSSPSLSAHEVFKLLCSITPVNSFSSHKTKTYKSRSHLAFLSFLL
LAAGDISPNPGPYPIPVLLGTRSPNPPCTPLKYRTLTPIPKASIQISCALWNSRSVCNKLTSIHDLFIAKSLNLFAITET
WLSPTDTASPAALSFGGLHLTHTPRPGNRAGGGVGLLLSPRYSFKVLPPPPSLSFSSFEVHSIRLFSPVSLRIAVIYRPP
GPTSQFFDNFSAWLPYFLHIPTSWTDPQFFDNFSAWLPYFLSSDSPSIVLGDFNIPVNNPNAPATSKLLSLTSSFGLSLC
SDSPSHSNGNSLDLIFTKCCSTSNFTNSPFPLSDHNLLTFQLSLTPSTPSAVPQTYTYRDLQSLNTSHLSSSFDSLHSNI
LTVSCPNQATSVYYSTLTTALNELAPAKTKRMRPKPLQPWHTAHTKSLQKQSRTLERRWRKSRSESDFCSYKSALLSYNT
TLCQAKQTYFTALINSLSKKPAQLFSTFNSLLSPPPPPPCASVTAQAIAEHFKNKIDTIRSDIAQLNPHNHSPPSLHAPQ
SLLGSFSPVTEEEVSKLLSSSHLTTCPLDPIPTKLLRNANPCLIKALTHLFNLSLSTGIFPSQLKHALVTPILKKPSLDP
SNPTNLRPISLLPFISKLLERLVYNRLTLFLSDNNLLDPLQSGFRQQHSTETALTRLTNDLLSAKAKKHYSLLILLDLSA
AFDTVDHPLLLQTLRSLGLRDTALSWFSSYLSDRSFSVSYNGESSSPLPLSVGVPQGSVLGPLLFSLYTSSLGKLISSFG
FQYHLYADDTQIYLSSPDLNPELLTRVSSCLSAISTWMSQRYLKLNLSKTELVLFPPSNAHIVPEVSITVNNSTITPSSQ
ARCLGVILDSALSFTPHIQSLIKSCHFHLRNISKIRSFITQDAAKILIHSLIISRLDYCNSLLIGLPLQRLSPLQSIMNT
AARLIHLSNRSSSAMPLCQSLHWLPLPSRIKFKLMTLTFKAVHNSAPPYISELISRYHPTRLLRSSTDLLLNSSLIPSSH
ARIQDFARAAPLLWNSLPQTVRLSPNLSAFKRSLKTHLFREAYPNLV
>L2_AC_7_gag#LINE/L2 1275-2225  [Anolis carolinensis]
MSWKETSEKNELSHLCDLLGKSFSTVLQQLEILNTKLDHLFKGISLIVKNPSPTDIITTIPTRPINMNKELSTLEGRGGI
KLKEQKVVVGSGLGVTRKGGGVLSGGVGLGRMDGKETDNVLQKPNNELPSKLAEQSLDTSCNSQHLLRTNKVAVEVSDSL
LNRGRWTSKRAVQISLSQILSISWSEVKIKTIDWLCREYQSWNRSLCLIIGLEDKILRDKLYLCGPKLQQWGITLRRVLV
DPLIRPLDIGLSMDSQDSPMLSHACSTPQSHNKTPLLSGHFPIYDDAKSIDSSLPLVERSSFFKQTSTFGGFPFQDS
>L2B-1B_CQ_pol#LINE/L2 2-1171 Fragment  [Culex quinquefasciatus]
CESALNLLLLKWKQCIEKGNIVLSVFVDLKRAFETIDRTKLIRVLKKSGIRGTVLKWFSSYLENRKQVTRYNDAVSAETA
VDLGVPQGSVLGPLLFILYINDIKQALKRVQVNLFADDTVLFVVGDSFDECFDIMNEELGGFSEWLKWKKLQLNITKTKC
MLVTTRQTKDCRRSVQMDGGIVERVETMKYLGVMLDEKLNFNEHIDYTIRKAARKFGVLCRINRYLTAETKVQLYNSLIA
PHFDYCSSILFLATQRQMKRMQVLQSKIMRLILRCDRLTPRRSMLECLQWMSVKQRIEYNTLVFVFRVKERMAPQYLTEA
MVRGRDIHEHDTRGADDLRLQIWRKACTQNSLFYKGFKLYNQLPEAAKMTSNINEFKRSCKEFVRQRPLE
>L2B-1_CP_pol#LINE/L2 1604-4405 [Culex pipiens]
QPKPDGDILYLNIAGMKSHFDELKLIIQKTTPKIIVLTETHLTEKHDLDEFQIQTYSCSFCLSRSAHTGGVAVYVDDRLK
YETISNMAVGENWFLAVDVKSSALNGIYGGIYHSPSSSDTEFIDSYEEWLRSVFADERRNVFVGDFNIRWNEPGCSRELK
NVADAMGMRQIVLEPTRVGPTSSNIIDLVFTNMENAEARVVEELKVSDHETISIAIGNDTINLPEREESYVSWKRYSKDK
LQEILRRNRSNNSRIDETIGEASRNFSTNLVSAVESLVDVRCCRRTETSDWYTDHLRAMKNERDNAYRQYRCTKSVPALE
RYKLLRNAYVRGLKQAKNQSVEEEIRSCHGDSKKLWRCLKSLIQPGGKQHAEIVFGTGCSDAETARRLNNFFVDSVEEIH
AKIPPPSVVPVAVQEEPEESLYEFQQVTMAKLKDTVRSLKDCAGVDNVTKRVMLDALDVVGGELLDIVNRSLSQGEFPQH
WKQTLVIPIPKVPKSTRPEDHRPINMLPLYEKVIETIVKEQLTAFVDRVGVIVEEQSGFRRHHSCESALNLLLVKWKQYV
EEGKIILAVFVDLKRAFETIDRSKLKAVLHRCGIRGTALRWLSSYLSSRVQVTRYNSATSPATDVNLGVPQGSVLGPLLF
ILYMNDLKQALRQAQVNLFADDTVLFVVGDSLDECFDVMNAELAGFVDWLRWKKLQLNVSKTKSMIVTTRRLNDISKSVM
VDGEAVERVEAIKYLGVMLDEKLNFNEHINYTIRKAARKYGVMCRISRYLTSEAKIHVYNSLIAPHFDYCASILFLATRT
QLKRMQVLQSRVMRLILKCDRLTSRQLMLECLQWMSVRQRIEYNTLVFVFRIRKGMAPKYLTDTVVHGSDIHQYNTRQAD
DLRLLQCKKTCTQNSLLYKGYNLFNQLPDEAKLTSNINEFKRHCKTFVLRRPLE
>L2-1_SP_pol#LINE/L2 3-2311 via tfasty with CR1-17_NV_pol, 1 frameshift. [Strongylocentrotus purpuratus]
HGHTLDLVITRCADNILHNCMVLDKGISDHYVISCDLNLQKSDAKRTLITSRNYRLINQESFGNELVAVLQSISQCGDVN
EQVEFINKAICDVLDRHCPVSVRMKRDRPCGPWYDDNIHLLKRKKRKSERKWRKSNLRADRDIFVCHKDELNAAIVKSKS
SYFTNLLLEANCKTMYATLHLLLGSSKKVLPYCDDQTDLANKFAGFFDDKISKIRTVLDEREQGLQTSGIVQSMDKHQCE
TGFSTFVDVSPSDIKMIISKSANKFCSLDPMPTWLVKDNIEVLVSPFVSLINSSLRSGVFPDKFKDAIISPCLKKSTLDS
LVLANYRPVSNLAFLSKVLETIVSKQLVKHLDRCDLHEVLQSAYKANHSTESALLRVKHDLLLAIDKREGVIMVMLDLKS
AFDTIDHSVLLRRLHSDFFLSGTVLDWFQSYLEGRSFAVSIGNHLSHKLSLKYGVPQGSVLGPLLFTMYLRPLGDILRNN
GVEFHLYADDVQLYYSFNPKSSSSFQNAILLIEKCVSEVNVWMIKNKLLMNEQKTESLLIISSRLRHYLPDHVHLLLGDA
LVEPSESVRTLGVVLDSSLTMSQQVTSLCKSLNFHLYNISRVRRMLTDEACHHAIRSLVLSRLDNANSLLININVSDIDR
LQRIQNRAARIVSNARKYDHVSPFLQQLHWLIPVHKRIMYKVALFVYKSMYNLIPSYISSLFCPIQQSRYSLRSRSDPLL
LQIPRINSKKGQQNITFSGPTIWNSLPLSIRSCSSVGSFKRNLKTYLFSL
>Kiri-3_AAe_gag#LINE/L2 279-1046 [Aedes aegypti]
MCTGMTSNTMDSIDGQLKPGSHLSTLDGLLKKVLHLCEIECSTIRSKFQDSVSDIRNQISIVQNEITSLQTVYLQNVKKL
AASVSAIEKDLEKSRKERIDRSNDLIVSGIPYVPNENLNDMVQNIAQHLGYENNNLPIVYATRLPKRTRKYRETTPVLIQ
FVTNLSREQFFRRYLAKRDLSLQHVGFNSRQRVYINENLSTVDRQIWRYACKLRNDGKLVRVHLKNGIVLVKRSNDNHST
PIHSMKQLFVFMKFES
>Daphne-1_CSav_pol#LINE/L2 3-2159 Fragment [Ciona savignyi]
RFFEAEXFLSDLYXNFCNLLSHKPPEYSGDCLLQNFFSVFSEIVDKHAPLRSISRKKRRLLSKPWITKGLLQSIKNKNSM
FSSIVKNKPNLQKYSVFKVYRNKLNHLLEISKQMYYKHEFSRSKNDIGRSWKLIRELIQIKSPTMTISKSVGITASDVTS
DPINVANKFNDFFVDIGKNLASKIKPPTNHVPLKPFRKSSSFFISPSTPDEVFSLINCLDVKKGTRHEDIPTKFIKLANS
IISPILSEIFNTCVKQGIYPDFLKNAEVIPIFKNGSDNLCTNYRPISLLSQFSKIFEKLLYNRLIKYLDKHKLLSNHQYG
FRENCSTTLAVADITNMLLSNTDKGLYSCGIFIDLSKAFDTVDHSKLLAKLEHCYGIRGVALDLFKNYLTNRSQYTFVHN
VRSSIKPVLCGVPQGSTLGPLLFLMYINDLPLVSNFVTKLFADDTFLCMSSKCPYELQAKVNLELIAIDDWLRSNKLSLN
YSKTSYVLFTGNLKPIGINDFHLNINNNKIIRSQSAKYLGVLLDEKLNWNCHILNLSQKLARYCGIMFKLRKYVDIKTLL
NIYYSLVYSQIQYAIVCWGASNKKTLYPLNVIHNKIIRAMSYSPARCHVTPLFSDLKILKLCDIYKLEMGKLMYKFHNKT
LPDSFNYIFQPLYCAHNHITRQVAHHDYFVPYFHTLLGQNSIGYRGPVAWTAIDVSLKKLGWFSFKKQLKNQYLLTYIT
>Kiri-8_CQ_gag#LINE/L2 3-926 [Culex quinquefasciatus]
FLLPEAKYGDEVLQLDTXXSSNLRHIAGLLSFPQVTHWNHSXFDSDHEWNEENRRQKKSSVSSKDGTNFKRSRDDLDETD
DRIQSFDELLTRMKQMFDDTNTRIDTCKSDLQAEFTTLREDVQSFKDRCSVEINNLSDALALTQNNVNLNHERHLKNXKS
NDLLLSGVPYHQPEDLLGFVKSASAALGYGERELPLIYTKRLXRPPIAPGSTPPILLQFAFRAARDDFYFRYLSSHNLSL
THLGFNVNKRVYLNENLTDQARSIKGAALKLKKSGKLHSVYTKDGFIFVKPAEGGEAKLVNSLEQLAE
>Kiri-10_CQ_pol#LINE/L2 1407-4241 [Culex quinquefasciatus]
MFDSSNDDASANYLIPRAVMNACLVNDKLNICHINVQSLCARRFSKFEELKLNFITSKVDIICLTETWLDDSITDATIEI
QGYNLVRQNRNRHGGGVCVYFKQNISCKILKKSLGAISTNGRYETDFLLLEMQFNGNRFVLAVYYNPPQSDCSYLLRTHI
EQFCLKYENSFFIGDFNTDIRKNTRKTNDFIDTIASMSFSCVNFEPTFFYNDGCSLLDLLLTNSPELVLKFNQVSMPGIS
AHDLVFATLDFEKRVDLDGYWYRDYNNFNNHAFENALSRLSINEFLSIDDSDILLNTLNNHMFILHEQAFPVKFKKSFYK
SWFNPDIERAIINRDIAYNAYKRSKSPEHRTNYNRLRNVVNYLTKTAKRDHDRQRINLNVPVRQMWKNIKKLGVSKSKNN
NIDSTHSAEEVNNYFASNYSERSSSSIHYSHSTDSFHFRQIHSYEIVDAVYSIKSNAAGLDNLPISFLKVVLPFLLPFFE
HLFNTIVKTSNFPALWKRVKVIPIYKKSGSSEITNLRPISLLCTLSKVFEKVIKDQISHYITEMNFLHALQSGFRKNHST
ETALMKVHDDIALSVDKKCVAVLLLIDFAKAFDRVSHVKLLNKLISLYNFSNAATKLLKSYLTERYQAVFLNGILSSFIL
CESGVPQGSILGPLLFSLFINDLPNVLKYCSVHLFADDVQIYFCSDQNFNIPDICSKINFDLNQIHTWSESNLLSINPAK
TKALLITKLKTKPDFPNLIMNGAQICFVNEANNLGLIFRDNLEWDLQIKSQCRKIYISLKQLTLTTKHLDVNTKLKLFRS
LIFPHFIYTDFIYSNANGMHIDRLRIALNACVRYVFNLNRMSRVSHLQKHLIGCSFSNFYKFRSCVVLHRIINTKKPTYL
YEKLVPFRNTRTYSFLIPNHSSFYYSQSFFARGIVNWNSLPTTLKQNTSKYNFKQSLLANLNINH
>Kiri-10_CQ_gag#LINE/L2 58-840 [Culex quinquefasciatus]
MSNKTKTRSASAVDGDGQTLKRSREDLTVADYPDEVENITDLWRNMKKLLFNSNSRLEGKIDACKTSIDDLEEEFVALRK
ECGEQMEAVHHRVNSVEFGLQQTAEDVARLERASELIISGIPYQQTENLPQFFQNIATVLGYDQPPIVDLQRLAKLPIAA
GSAPPILCQFALRNVRNDFYRRYMTNRDLTLRHIGFDADKRIFMNENLTKLAREIRSQALRMKKAGIFAQVFTRNGAVYV
KRQGQPTSELVQCVQQLSLQK
>CR1-16_SP_gag#LINE/L2 230-994 [Strongylocentrotus purpuratus]
MPSDSSRDTEKSVANDAIQRYIKGEEFLNSIRQTVREALHKEINVLLNRIDINEGKIMDLECRFNEREKEIVDLKKLIED
QQSSLTRVQRTANIQEQYSRRNCLRFYGVAHKEGKDTDDLICELARERLKVTLKKEDIERSHRLPTKTTESVNPPARSTR
SNKRNDGTKPDVIIAKFVSYRMRSLVLSKRRELKGTRMGIDEDLTKTNANLLAKAKNCEKTLTAWSSDGRILGLFPTSGG
KQIKRLITSENDLK
>CR1-16_HM_pol#LINE/L2 561-3644 CR1-54_HM_pol broken and 87% similar.  [Hydra magnipapillata]
MALISDFETLVFNFFETKFFSLHENSDPDINYFHDTKIECSYYYPNELKGILFKNVNNDQIRILHVNIRSINCNFEKFQN
LLEETKYFFNIICLTETWATSNDIKKNFNFYLSHFEMISLERQINKRGGGVLIYIHKDIKHCCRNDLSVSDGDGEILTIE
IINERTKNILVSCCYRPPDGVSENLSMFLQQNVIAKGNNEKKKNFLVGDFNMNCFVYNDDNKVKNFYDTIFESGAIPLIN
RPTRITKNSATLLDNIITTDLFNNDIKLGILKTDISDHFPIFLTINTDQLPKQKLNKIVKKRFYTSSNIEAFKNQLSLLH
WKHLNFNENANNLYEKFYETFISVYESNFPIVTITLKTKHFDNPWITKGFKKSSKTKQRLYIKYLKTKTPDSEKIYKDYK
NLFEKIRKKLKKNYYSKLINKAKNDSKRTWQILKEITGKQKTCSSSLPQMLKVDNNSLHEPQIIAHEFNKYFTEIGSILS
SKIQKTQTSFYDFLLPFDKNISSEELSAELSFDEFEKAFKSLKKNKAPGADEINGNIVIDCYEQLKNILFKIFRASIHQG
IFPERLKLARVTPLHKEGDRSNINNYRPISVLSIFSKILERIIFNRVYNYFNYNNLLYNNQYGFRKGSSTEHAIIQFIHN
ISKSFEKSQYTLGVFIDLSKAFDTVDHHILIQKIKYYGLNNKILKWFESYLTNRKQLVYSNDGYQSEPLSITCGVPQGSI
LGPLLFLIYVNDLNKASKLKSIMFADDTNLFLSHTDIYELFSTTNKELKHISNWFKANKLTLNINKTKWIIFHSCAKKRF
LTNNMPQIYIDETIIKRDTVIKFLGVYLDENITWRKHIDHISTKVSKNIGILYKARNYLNKKNLTQLYYSFIHNYINYAI
IAWGSTEKSKLQHLYRRQKHAIRVVNYADRFSRSKYFFDYMNVLDVYKLNIFNVLCFTFMWKNDLSLFVFNDLFSLKPIN
KYTLRSNSFLNEPFCKTKFNQFCIAYRAPHLWNKIVLPNFDPSTTLPVFKTKLKNFILCMDNILKFY
>CR1-22_DR_pol#LINE/L2 5-1477 Fragment via tfasty with CR1-9_SP_pol, 2 frameshifts [Danio rerio]
SVFLKTYKDILHGPITHLINLSITQGIYPDAWKLAIVTPIFKAGEQTNVQNYKPISILPTVAKVAEKWVAQQMIAYLNAG
HTPLHPMQFGFKTNHSTESANCYLIENMKSKLDRGGVIGAFLDLKRAFDTVNHEVLLSKLTHFNFSSEAIXWITSYLTNR
KQCVRLGNSQSVYRISNCGVPQGSILGPILFSLYINDLPQVCPTINIQMYADDTVLYVHAKNKQLAANYLTEALVHVSDW
LCESYLNLNTSKTVCMFFSQSLTVTHHPDVFVKGEKLRVVSDFKYLGLILDSQLTFQKHAKKVIKIVKFNLANFRHIRPY
LTNEAAKLFMHSMIFSHITYCLTSWSHASKTVLKSVESLYKQALKVFDQKSIRYHHCNIIQKHYLLSFDNSMKYLADACM
IFKILNGYAPPPLCEFVTHKNNNGQATRSVTRGDCAVQFRRTTFARSVFSVRASHFWNTLPIDLRGVTNYSTFKYKLKKW
LKANQVCNHV
>CR1-26_HM_gag#LINE/L2 99-935 pol too broken and too close to CR1-10_HM_pol  [Hydra magnipapillata]
MDKKNIVVRKKSNETGNIDETQIXTNVVRDIFHEMFSKQQKDIFKLISGNLKITNDKINELLDEIHKSKQICDSLKKENE
KVNIKLKEITEKVRILEKTNKDIEESLTVTQDIQEKKVCELEKKIKNKNIIGEEEKNKLRQLEDRLRRNNLRIDGLPEND
QETWDETEKKLLILFENELNIRNVDIERAHRVGKKEENKTRTIVVKILHYKDKIKVLNSSNRLKGTGIYINEDFSFETTV
IRKKLLEEMKMHRKNGKYSSIKYDKLIVREFRKIKASA
>CR1-24_DR_pol#LINE/L2 3-2080 Fragment via estwise & tfasty with CR1-10_SP_pol, 1 frameshift and 2 stopcodons [Danio rerio]
EIGLIPDVEEAWAYFTLLFRTVLNKHAPFKKLExRIVLALGSAQIxLRSYAINTFWRKAKTSKNMSDWQSFRAIRNKCTQ
HIRQAKSSYFKQYLAGNGPDSQRFWNIIKTMENETVSSHLPILIKHDGVIITDKLNMVKHFNRHFVNAGCXLKNSSPVNQ
TSTLHSPASGPHTFSFRLIKETEVLGELLNLDTHKTAGLDDLDPSFLKKAAYIIAEPITCIFNLSLQTGVLSRDWKSAAV
TPLFKGGDKTDLNCYRPISILPCLSKILEKLVNKQLIYYLETHNVLNQAQSGFRSGHSCVTATLKVLNDIICAIDKKEYC
VAAFVDLAKAFDSVDHEILLDRLRYIGLSESCLVWFRNYCSGRLQSVRVEGFLSDPLLLQKGVPQGSILGPTLFNIYIND
IASAAGDSYIHLYADDTIIYTSSSSLTTALSSLQASFLSIQRAFTNLHLVLNTNKTKCMVFNRNLPHVEIPPKISSLDGT
EIDYVDCYKYLGIWLDGKLAFETHINELLKKVKARIGFLYRNKSSFTHSSKQHLVKLTVLPILDYGDLIYRSASKTLLHK
LDVIYHAAIRFVTGAPFNTHHCQLYSSLNWPSLQSRRQIHWFLFIYKTLIRKTPQYLQSLLNIHETCRNLRSSNFINLCI
PKVCTSFGRYSFQFSAADAWNHLQQTLKLSTFIPLSSFKNSIQSIVQDHCACF
>CR1-14_NV_gag#LINE/L2 120-887 [Nematostella vectensis]
MGRHSDKKKSASKSCEAEPTESTSTVGDEDVVTMAAVRGLLKVQESMLRSLFESTVSSINARVDELVGTIAGIKASLEFS
QKDINELKPLSSKLETAEDGIGQVKNSLEYFENQSRRNNIRVSGIEESEGETWYDAEVKVKEAIKTKLGFENVEIERAHR
VESRKKARGGEQTKPRTIVCKLRDWKQREAVIREARKVKPEGLYIAEDLARATLMKREGQIPKMKEARKAGKLAYFVLDR
LVIKERKNAESPAGE
>CR1-9_HM_pol#LINE/L2 1-2965 Fragment, via tfasty with CR1-42_HM_pol, 1 frameshift.  [Hydra magnipapillata]
SINCEYVDVPMYNKLSQNSLNYFHINISSLPYHIDDFKILLASFDNLPDIIGITESNLYDNDLSITNVELEGYVSVHTPT
KAKKGGVLMYIKSNLNFKIRSELVRLKSKELESIFIEVINLRKNLIVGCLYRHPSMCPTEFVDYYLNPLLEKISLDKKKF
MLMGDFNFDLLKYDTSNEVSYFLESMFSNSLFPFIIQPTRITTHSKTIIDNIFLNFYSSEIISGNLTASISDHLVQFMLI
PHTKTQTSSEPIVRRCFKNFKEAEFIQEISNVEWDDHIKDDSDVNDSIKKLIEIFDHILNKHAPYKKLTKNQVVKRNQPW
VTKGILKSITIKNKLHKKYLKSKNCKIKNIYFKKFKHYRNSISNLLKFSKKKYYTNFFNHNINSIKNTWKGIKELINVKR
NNSNSLTSILINNKCETNPKTMSNHFNNFFTTIASKLSYEIPNSKFNYHEYLTNPTSNSFYMQPITKEETLDYINSTIIE
GRSVGPNSLPTKLFKLVSGTLCKPISIILNNSFRKGTFPDAFKLAQIIPIHKKGSTIDCTNYRPISLLSNVSKIFEKVMH
NKLYNFLNQNQCLYKHQFGFRKKYSTTHALIEITESIRVALDNGNFACGVFIDLQKAFDTVDHEILLSKLNYYGVRGISL
QWFKSYLSDRQQFVTINGTSSDIKNVSIGIPQGSILGPLLFIIYINDLNLSIKHSKTYHFADDTNLQLITNSLKKLNKYI
NQDMASLVQWLRANKISLNTKKSEIIIFKTQNTNFSKKTKKNIPKYLNFRLSGQKMYLSSNITYLGVVLDEKLSFKTHIS
DLTLKLSRSNGMLAKVRHYVNFETLLSIYHSIFGSHLRYACQVWGQSKTVCLSRVVSLQNRAVRIIHFCPRNFPTDILYL
TSKILRFYDLIQFLNCSFVWDQQHGVLPTIFHNYFNNRTTCGHNLRSVTYNNLTLPLKQTSKHGINSITYQCILSWNSLP
NTLKSGLILRFKNLFLKSLHHFYLKGYA
>CR1-8_HM_pol#LINE/L2 402-3494 (gag really messed up)  [Hydra magnipapillata]
VILFFIYVSKFYIKPCIKMEQNSIFQFSNENINDNDTETDCFDKLNFESKYYSVYQSAQYLKNNKNAFSILNINIRSLNK
NFENLKILLDEIKHDFSIICLTETWCKCNKQSTQFDLINYTSIHQPRDSYGGGGVSIFVHNSIDFFPRNDLCVNETDCES
LCIELYNKTTKNIIVNAIYRKPSGNLKKFKTHLNTFLTKVNKERKHIYVVGDINLNLLKQASNKIKHFIDKLLQHNVIPT
INKPTRITKKSSTLLDNIITNNFYNNYISTGIIKTDLSDHFPTFLITNNITINNISSKFIIYRRQINKYSLQKFQHLLKY
NVDWDLIMQSVEVNNAYELFLKFFCEQYEKAFPEKKIVINTKSYQAPWMSKGLLKSSKKKKKLYEKFLKKKTYKNETNYK
LYKNIFEKTKQQSKKIYYSKLLKKTNGNAKSTWSVIKEIIGRKNNGISIQPKKLLVDGKIIYDKSIVAENLNSFFLNIGP
NLAEKIPSSSSSFDSYLKTYDKVMDESKLDINELRYALDNLKNNTSVGFDNISINVVKSVFHIIETSLYHIFNLSLQSGT
VPEKLKIARVLPIFKSGDDTDSSNYRPISVLPCFSKLLERIMYNRLNSYLTVNNMLYNKQFGFKKNHSTDHALTELVTHV
TNAFNDDRFTLGVFIDLSKAFDTVNHVILLKKLEHYGIKNNNLLWFKDYLSNRQQYIQYENVKTTKSIIKCGVPQGSILG
PLLFSLYINDLSLTSNILNFILFADDSNLFYSHRDIKTLFKVVNEEVNKVNEWFICNKLSLNVNKTKFILFHKPTKTGNL
PLKLPDLKINNINITRQTTVNFLGVILDENLTWRKHINTLERKLSINIAMMYKAKPFLDIRSLKSLYFSFIHSYLTYGNI
VWASNSYAKLKKIYTKQKHACRIVFGVKRTVPCEPLLRKLNALNVFKINIFLVIQFMYQIKHGLSPAIFYPYFREVSHKY
PTKFSENNFVTQKYNLKLCSYSIQYRGPILWKNFQHIVNIKEKTLPQFKSKLRRYLVLTDFNIADLLCHF
>CR1-9_NVi_pol#LINE/L2 1201-3798 via tfasty with CR1-1_NVi_pol, 2 frameshifts and 3 stopcodons. [Nasonia vitripennis]
MAQEFNFEDIYNIERDAENIRSLNKSISKKKNLILCVNIRSLNANYEKLESFIESLVVKPIIIICTETWILQYPQYYQLQ
GYKSYYNDSKINRADGVMLYIKKNIQEITKIEVIDRLSVVSSDTFLESGEAIRISAMYRCHDISKSEFTNSVRKFLSKQV
NIKNQCIFGDFNIDIRDINYDKIGLAEKTIAQEFLNNFFENEYIPFFRGITRPSQNSENGTCIDNCFAKVRNIELESFKL
NIPFNDHYPLFISINKFKIQKDYNQSACINYGKLINIAKRVEWDSLLQINDPNQAINELISMIQSCVEKATDRKYSNKNK
KDSVPKKKWITKAILISCKTKEMLYNIWKKNPTNMKLKMDYKNYEKILSKVIKDAKYKYENNAIRKCSGNSRQLWSIIND
KLGKKRNKEDHLICIIVNDQKIEDKTTIANTMNEYYCNVGIHLSNQIKKMDLEQLKLPVRNNYSIFINPTNMYEIQNIII
AMKKKAGGVDNISAITIKTLSKHILKPLEYIFNLSIQQSIWPNALKQADIVPIYKSGDNSCISNYRPISLTSNIAKIFEK
IIYNRLYNFIMKHKIISDKQFGFIRKRGTKDALNCLTNIIYRNLDKSKPIITAFLDLAKAFDTVDHSILLDKLERYGVRG
EALKLLISYLSDRKQCVKISNCKSEYKEITIGVPQGTILGPLFFILYVNDLLIDMQNETILSYADDTVIISCDNSWTAAQ
ERLNEYLRKVAIWLNLNKLSLNVNKTVYIAYGNYCDSVPSTLNIKIGDNVINRVDSYRYLGLIIDYNMKWDKHINYIIKS
TRYLIFIFAKLKKFMDSKTLMLLYYAFFQSITNYGIIAWGGVITIIxIxFKVYRRKYFELxIKTVI
>CR1-11_SP_pol#LINE/L2 428-3388 [Strongylocentrotus purpuratus]
MNSHAHTPDILVDDINESKYYTPQEFKNSFSYKPDNISLLHINSRSLNKNFEYVENLLHSLNNFAFSVIGISETWLHQNS
PDMFNLPNYKLIRADRKGRRGGGVAFYITQNLNFKIRSDIKLTQAESLFIEINNSNVKNVIIGLIYRPPDSNCELFCDEL
DFYLHKIGDENKHNFILGDFNINFSPSSDNSNSTNCMQLMHSYGFFSIINKPTRINPHSSTQIDNIFSNVHNNKTIGGIL
CSEVSDHLPIFLTCECKLSCSKSFDELYRKESKRNIELLKQDLFFEGWAEVYNVNDVNTAYKHFSNKLQYYYEKNIPLGK
MSNKRNKPRNPWITKGLLKSIQTRNRLYKLHLRNPTDTNLNTYKIYRNKLTKLIRTSRRLHFSNKIKKASSNTTATWKII
KEVMGKKTNPPPTDNITLNGTKIHDPSLHANSFNSFFTNIGPELASKINRTHAHFKDYLSNQNQESLFLNPTNPSEIINI
TQSLNNSKSHGFDRISMSLLKEIMYPLAKPLTHIFNHSLSQGVFPDLLKIAKVNPILKKDDPHEISNYRPISLLPSISKV
LEKIVHNRLHKFITKHKILNSNQYGFRKNYSTDLALIQIYDKITSAIANKEHVIGIFCDLSKAFDTLNHAILLSKLSHYG
IRGQPLLWFKDYLTNRRQYVTFNSYDSDPLLIQCGVPQGSILGPLLFLLYVNDIINTSPLLSFILFADDTNIFYSHKDLN
SLNNTLNYEINKVSDWFKSNKLSLNTKKTHFMYFKHHSHNTETPIYIKIDGMLLEKKTNSKFLGVLIDETLTWNDHLHQV
TMCISKSIGIISKLKFLLPHATLFLLYNSLVLPYITYCNSVWANCGSTKINSIFKLQKKAIRICTGSHFLAHTDPLFYKL
KTLKIFDLNTTQVAVIMFKYINNLLPPSFDNMFRFNNSVHSYSTRISGNFHLTNPKLSITHKSVRHSGPDIWNDFPDNIK
SCSTIYSLKATLKRQIIQSYAPHSLN
>CR1-10_SP_pol#LINE/L2 1-2640 [Strongylocentrotus purpuratus]
NFDIIPQFNYMTDALESVFIEIKLPQKKNIIAGVVYRPPNSNYEEFVTSLNTILSSKKLQNKNCFILGDFNINLLNADHN
PQCQNFLDTMLTQSFLPLINKPTRVTDSSASLIDNIYSNISMNSCSGIIIADISDHFPVFSFLPILDTTNSSHNQSTHFR
KHSEDNMNRLKHSLSLMDWLDVLNKSDVNEAFELFLRIFTHCYDRDIPLQSRSARASYKKIPHAPWITMLLLRCINRKNR
LFYKYKATPTDHNKQKYINYRNTLTTTLRLAKKEYFFNQFEVHKKDMTNTWKLINTALNKNNIKSPVQEINTGVSVTQDP
LEIAENLNNYFTNIGPNLASKIPNSRRPFHSFLKDPNPQSIFLVPVQETEVLDIINNLKNKKSAGYDGISNSLLRHVSEH
IAKPLTYIFNLSLVCGTFPSKMKIAKVVPVFKKGDKREQGNYRPISLLTPFSKIMEKIVYTRVLKFFDDCDLFSNSQFGF
RKKHTTTHAMLLFIDKVAKAIDNFSHTVGIFLDLSKAFDTVNHEILLYKLSHYGVRGRALEWFRNYLSNRTQFVSIDNSV
STSKALQCGVPQGSLLGPLLFLIYINDFKNSSDILSFILFADDSNIFYSHRDPHTLLDTINKELHHVNDWIQANKLSLNV
GKTNFMLFSNTVTQLPGDILFNNTKLVCVDCTKFLGLSIDNKLTWKKHIDNMCKILSRNIGVINKLKFCLPSRILLTLYS
TLILPYLNYGILAWGNARKIHTNRIFLLQKRVVRIINNETFFSHTEHLFVENKILNVHDLFSFHLGTFMFQLTSKQVPSA
LTKLFTTNAHIHTYPTRRRNQYHLPLTRTVFSQKTIVYTGPMYWNTLDASLQQHSSIFCFKKYLKLTLLKSHSAPAMQP
>CR1-32_HM_gag#LINE/L2 145-858   [Hydra magnipapillata]
MSKNFTITQIKELLDIHENTIIKLLNDKIERLENKFNIIVEENKYLKSEVNELKKSVEFINEKYENIKNEAANLKKTNDI
NNQGNEKKKLEDDVIINKLAELEDRSRRNNLRINGIEDCDNESWEESEKKVQEFIKSKLGIKYNVDIIERAHRVGRKESD
KPRNRPIIIKFLNYKDKSTILEKYTNLKLWNQKIYINEDFSERTIEVRKKLFAEAKELRSKGKFAKVIYNKLYTRDI
>Crack-1_BF_gag#LINE/L2 465-1238  [Branchiostoma floridae]
MPPRKQNLSEDDMSTIKDLLEQQQAKYEDLLQRQQSIFQSFIESVMTSTNNRFDNLVREVQELKSSLQFSQHEVDTLKTK
LNEANSEITNLKATIDDQAKNPKSLQMPDMEKKMDYLENQSRRNNVVIDGIEDDVKETWADTEVKVRNILTKKLQLDSKT
IEIERAHRNGPFRNDSPRPRQVVVKLLRFKDKQMILNRARSNLKNTNIYINEDFSDQVRKRRAELVPKMREARQRGEFAI
ISYDRLVIRKKTNQEMS
>CR1-77_HM_gag#LINE/L2 52-759   [Hydra magnipapillata]
MAKNFSASQLKEILDIHENTMMKIFNEKFERLEKQIDKLNEDNKILKTEVSELKKAVEFISEKYDKIIIEQEGLKADCAK
PDRNLEKSLTINLRDKLAEIEDRSRRNNLRISGIEESVDESWDDCESKVRELIKKKLDLQGEFIIERAHRVGKNDKDNTI
KKCRTIVVKFLNFKDKSTVLGKYIKTKLWNQRIYVNEDFSERTTELRKKLFTAAKDLRIKGKYAKVVYNKLITRD
>Crack-1_CP_pol#LINE/L2 1525-4413 [Culex pipiens]
MASCIVKNVSFDCIEDCICNKVNVSVALRVFQWNIRGMNRLDKFDNIKEFLHRYKSPVDVLIVGETWVKEGCTELYGIEG
YSAVFSSRSDSHGGLVVYFRDKLKCFVTKNVNINGCHYICLHLQHAGKPIDLVAVYRPPSYPFGATLEIIDKILSELPSE
HVILAGDFNVPVNITTSPAVQEYLRLLDSFNVQVTNTVATRPSSGNILDHMICTTTFADTLLNETIFTEASDHSILVSSF
NWHATKKLRVLEKQIVDHQRLNTLFSSALENMPDGMNANEKIAFITDKFNEIKKSVTKTVSVEAKIKGHCPWMTLDLWKL
LAIKEKLLKKSRTNPLDMQTKSLLKHASKKVQSKKEECKRNYYYRQLSSSSTKQCWRCLNEIMGKAAGSVKEMKLKIEGT
EVTDPVTVSYELNKHFCTVGSNLASTIISDRNVLKFNTLRRIDTTMYLHPTTSEEVLLLINKLDCSKSPGPDNITAAALK
KHKLAFSCILRDIFNEIILTGRYPDQLKSARVVPIFKSGDPMDVNNYRPISVLSVLNKIIEQLIASRIKSFLNSLELLYK
NQYGFRRGSSTRTATSELLDDIYQDLDGKRFTGSLFLDLKKAFDVINHGLLLQKLERYGIRGAALSLLRSYLSNRMQFVN
SNGINGDSAIIDTGVPQGSVLGPLLFIIFINDLSRVQLFGKVRLFADDTVITYSHKDAVHITQMMQADLQTLNEYFTSNL
LFLNLSKTVFMIFHSPQRTVPELPAVAINTTEIKKVSSFKYLGLVLDETLNWKPHIDQLKKKIAPACGVLRKISSFVPFR
WLKSLYASLIHSRLQYLVINWGTANKVNLRELQTLQNRCIRTILRKPALYPRRSLYNDVNHSFLTIRALHMFQIYVHMYN
IMHNPTTHHNFNPVRVEHARITRQTGDLRTTLPHTEFGKRCLSYSGCYQYNKLPDFIKQSPSQITFKCQLKSHLKQKIEQ
YLQ
>Crack-1_NV_pol#LINE/L2 1038-4274 [Nematostella vectensis]
MTSTECRNCLKVVKKNSRGIQCDICLEWFHLKCTVLSVKEYNYFSRTNDLWICLFCRHAIFPFQSANNTALAELAYNSNE
ACLCSRKIANLNLDSLPCFDVMSSLEKISSLSNVEIQSSLAEKAFSALHFNIRSLSKNFDRFCHLLDELQNPFPVIGLSE
TKILDGLPPLTNTCMTGYNFLSQPTLSDAGGVGFYIKNNLVYSKRDEFCCSKPEFESLWVEIEIPQQRNIVCGTIYRHPN
SNLDTTLNFLYDIVERVSKENKFCLIMGDFNLNLLNYDSNSDTNDFVNSLGAYHFHPHILKPTRITEHSATLIDNIFFNS
LEHQTLSGNILTGITDHLPNFLIINKLAPLPQSYKMYKRDFSKLDKEALLSDIQSINWIDVLPSNDGSKNVNDIFQSFFS
NISAIIDKHVPLRKRTRKEIKSLSKPWITKGIITSIKLKDKFYKKYLVSRSEYYLSKYKCYRNKISQLIRTSKQNYYQNY
FATNSKNIKNIWSGIKELITTKPTCSNQPSKLIINNKTVKDPKAIAIAFNNFFATIGSQLASKIPHVDRSPESFLGPPLV
NSFVLSPVTAFEIEDIISGLNPSKASGPYSIPVCLLKFLKSYLSVPLEILYNHSFSNGCVPDQFKIAKTIPIHKKDSASC
MDNYRPISLLSIFNKILEKLMYKRLIAFINKYNILYDKQFGFREQHTTFHATLLIVDKIQRAIEEGQYSCGIFLDFSKAF
DTVDHKILISKLAHYGIRGIANEWFSSYLSNRRQFVSVNNSESDEVVLTHGVPQGSVLGPLLFLIYINDFHRCSSIFDFH
IFADDTNLFYSNSSLLALESCINENLLHVSSWLAANKLSLNIDKTNFIIFHPPQKISNYTLSIKINGKCIKKEKYIKYLG
IYIDSHLSWKYQILHIAKKIKRCIGVLSKIRHYVNISVLKMLYYTLLFPFLTYSVVTWGNTYATTLKPLFILQKRAIRIL
TFSDFRTPSNPLFYQLSLLKLHDIIYLNNALFMYDFHSDHLPSVFKSFFTNINRIHQYNTRLASRKTYYLPKIRTNYGKF
NIRFLGVKIWNDIQDDYKSESRSSFKTLMISSLLDRYKS
>Crack-1_CQ_pol#LINE/L2 1002-3986  [Culex quinquefasciatus]
MEDIETLPDFHSHNFLFDSINNYDRDFSNFHGLLIFQVNARSICKISRFDQLKFVIEQLKRKPDVIVVSETWVSNDLIQL
YRIDGYNSVFSCRKNGTGGGLVVFVLDNLTFTTNCSLELSSVPKPINFIQISISVSNNRSIVVSAYYRPPDDRNLTDFFN
HLELILSASNSIHVLVGDINIDSSSSSNKFLDYLNILTSYGFLLTNTNITRPSSSSILDHVAFNHTDDFTVTNDTITNPD
SDHNFILSLFDITPISTSAKISYKHQTNYVRLEQLLEMRFNPVYMGNFDDPNEFYNYFISTLTKSIQESTIITELKSKSK
HICPWFSDGLKTLLNSSKNLRKKRNKLFAAGKSISEIDSKIHDLTNKIRTYSNTLQTQYYTNKFANATNAKDTWKNINDI
LGRKIHSKLPTEMLITDAFGNDEKINNAQLISNEFNNYFSSIGEKMANKIPSFPNDNINKFKTLKRPNSTFFLTPISQTE
IFDIINSLKNNTACGNDHINAFTLKKINHIISPVLAEIFNLCIILGVYPDKLKVAKVTPIHKSGSTSSFNNYRPISVLSA
INKVFEKLLFNRLTTFLNSNNFFCHQQYGFRERSSTFNAVVDLVNKIQHDLDNRDDVLGLFLDLSKAFDTVDRRILFEKL
KFAGIHGVALDLFKSYLTNRSQFVCFNGISSLMNLIDVGVPQGSVLGPLFFIIYLNDFSRLPLKGDLRLFADDSSLFYNS
RLNSVNDLNLKHDLLIVSEYFRINKLTLNINKTNIINIKNSSLSTPNPLIQTKIEFPDIDIVSEFKYLGILLDSRLNWSS
HVNSLILKLNKITGIVFKIKHKLPRNVLILIYHSLFNSLLSYLTAVWGNTYDYLLNKLQIVQNKFLKSIFNLPLRSHTVD
LYTKEKNIMPVRGIYIIQVCSFIYKSLSNQTHTNTKFELSSHQHGTRNHNLLKRPNVSTLSGERSITFKGANYFNFFFNK
FGLCSSLSIFKDRLKLYLAQPEIVEKLIKSIDILS
>CR1-68_HM_pol#LINE/L2 900-3862   [Hydra magnipapillata]
MEKNIIGVYDQVNSNGSKLNQHNLHIKIKRTSALNLGIQNVQSAMKKSAIIHDIVQNHSLDIFILTETWIKSDDPTAIKE
DMAPPGFKTIQYCRSDHRGGGVAIIYRDNLNIKPLSLSSTCLSYERTSAKLNLANTIYNIVAIYRSNPIIPTNIFFFELS
ELLEELQTLSGEILLCGDFNCPGTTPITCNSRLNEILETYNMIQRVQSPTRISSTTGIANLLDLVINRHDDISLKSIQVT
DEGISDHYMIRVELYHQPSNTKTVWFSKRNFRKLNLSCFIKELQVMPCCLSPENNVDDYAEQIRSSITTVLDHLAPIRKY
SMRIGKHDDQWLSSDAKNKKIRRRKLERCYRKTGSLSDKKLYRTACREAAAAIHKSRCSHYKAKLNSAYGDQKETWNIAK
KLLHSNSSKTNNTIPEAKCDIISQYFIRKLEIIKNTIQERLAKTPISKFISELSPPVDILTTFGTVTPKDVSKIIKTLKP
KTSPLDIIPTNILKSCSEIFSPIIAHLADLSFKSGIFPTSYKVAQITPIPKKSGLAEFDLTNLRPISNLNTISKILEKLA
LSRLHPHVTSSVNFNPLQSGFRSYHSTETALLKICNDILLNIDDGLTTILLSLDISSAFDTIDHSLLITRIKNDFGVTDI
ALKWLTSYLHSRKSFVSIGSSNSRLIASSTGVPQGSVLGPFLFSMFVSPIYRIIAKFGTNHHQYADDTQLYTFLSPGKDS
INKITECANAVTTWFLENGLLLNPNKTEAILFGSRKQTSKYKNDLNIAFSGTTITTINSVKILGVILDSKLSMDKHINNI
IKSCNYHIRALRHIRPCLTKEAANIIACGIVNSQLDYCNSILSGTYQKNIKKLQRIQNNLSRIVFHSPFHLKSEILLKSL
HWLPIHQRIIYKISVITYKILLSKSPAYLFELLEVRTSKQNTRSLDSCQLTRRQQKTSLGSKSFCMTAPRIWNGLSLNTR
NSTSIETFKKRLKYELFMNSFSDS
>CR1-41_DR_pol#LINE/L2 39-1725 Fragment via tfasty with CR1-4_DR_pol, 3 frameshifts and 1 stopcodon. [Danio rerio]
NSFLxFYYDLFNEKIFNIHQHLGSHPFRALHLNFHNLRFSFSSFQLPTTSEISNLISKSKSSSSHLDPLPTVLVKACLPS
LIPLISAIIHSSLSTGTVPASFKTAAITPILKKPGSDPSNFNNLRPISNLPFISKILEKIVAIQLQSHLSQNNLYEQFQS
GFRPLHSTETALIKITNDLLMAADSGLISILILLDLSAAFDTICHSTLINRLSTLGITNTPLDWFKSYLSGRTQFIQLKS
FTSQHFTVSSGVPQGSVLGPLLFIIYLLPLGNILRKYNIQFHCYADDTQLYLSGKPSSCFPPTSLTVCLAEIKSWLSLNF
LKLNSSKTEVLLVGTKSTLSKTDSFSLSIDDCSIYPSKQVKSLGVILDSTLSFDSHINNITRSAYFHLRNINRLRPSLTP
SSTAVLVHSLVTSRLDYCNSLLFGLTHKSLRKLQLVQNSAARIITRTPSSHHITPVLQQLHWLPVHFRIDFKILMLTFKA
IHNLAPPYLSALIHISVPSRTLRSSSSLHLSVPSSRLSTMGNRAFSRSAPRLWNSLPPAIRNIDSLTLFKSKLKTHLFKM
AF
>CR1-35_HM_gag#LINE/L2 88-793   [Hydra magnipapillata]
MAKFSATNIKDLLEIHENTLIKLFNDKFDKMEIKFNIIQEENNILKNEMKELRKAVDFVSEKYESTLAELKELKKNTISN
VELTDNIKFNDKNNDVKDKLAELEDRSRRNNLRFNGVEESENESWEDSEKKIQEVLKSKFGFTNNLEIERAHRTGKKEKG
VKKNRTIIVKFLNYKERNAVFEKFIKLKLWNEKLYVNEDFSERTMEIRKKLFKEAKELRAKGKFAKVIYNKLITRDF
>CR1-52_HM_pol#LINE/L2 881-3967   [Hydra magnipapillata]
MAXETIEFETYYSDYFKTANNILHNDFYHADKKIFNEKCCNTEYFEIETFKTQFKQSNEDFTVIHINIRSINSNIDKLKN
FLLECNYSFSMICLTETWCTDNFSQENSNFQITNYNMISFERKILKRGGGILVYIRNDLEKKIRNDLSFSDADNEALTIE
IINKNKKNILVTTCYRPPNGNIIKFSNYLNQIFIKNNNEKKYIFCIGDLNIDCLKYNENTNIKIFFDNLFQLGIFSLINK
PTRVTSTSITAIDNILTNSFLDISLKTGIFKIDISDHFPIFFSLTQNSASLNNSKIKTYKRKINKSSIHEFKETLSKTNW
SNVYLQCDRGLTNSAYNLFIDTFLEHYNKHFPIIEKEIKVKYLXCPWITSGIKKSSKKKQKLYNKYLKNRNEKNLTVYKQ
YKNLFEKIKKKSKKMYFSKQLQKHNGSIKKTWEIMNEVIGKTKTKSEILPSRIEEDGLEYTDKKTISDKFNKFFVNIGPX
LASKINNSNNSFNNYFTDHTSSFTESDLKSEEFEEATKSIRKNKAPGIDDISSNVVYDILYILKDPLLKVFKSSIRTGVV
PNKLKIAKILPIFKTGDTALLTNYRPISILPVFSKLLERIMYNRLYKYLTANKILSECQYGFQTNHSTEHATLDLMDNIR
SSFDKGKFVLGVFIDLTKAFDTVNHKILLEKMRKYGIKNQTIKWFTNYLNNRQQCVIIDGITNTKLLKIKCGVPQGSILA
PLLFLIYINDLPKASTNLDCIMFADDTNLFYSSTSINDLFDKVNIELQKLKTWFSANMLSLNAQKTKYILFHSKKQKNKL
PSILPSLSIEHKKIERTQTIKFLGVIIDENVSWTAHINAINTKISKSIGILFKARPFLSQKNLKLLYFSFIHSYLTYANI
AWGSTHKTKLMSLYRRQKHASRIIHHKNKLTHAKPLLKEMKALNIYQINIYANILFMLKYKLGLVPNRFTENFFQSNINK
FNTRATGNFIVPRKRQKNSQFSISYRGPYLYNKLIPNYTSISLADNITSLKSKLKNHVLNTDNYLEMF
>CR1-66_HM_pol#LINE/L2 912-4005 via tfasty with CR1-27_HM_pol, 1 frameshift.  [Hydra magnipapillata]
MAALNNFESLAFNFFEKEFFSQDENSDPDNNFYCETFSDCSYIFPSELEEYLFKNVIDKNSNQIRILHLNIRSLNSNFEK
LLNLIEETKNLFNIICLTETWITSKDLNSHFQIPHFNIISLERQINKRGGGVLIYAHETLRLVFRGDLSISDSDKEVLTI
EIESNQTKNLLISCCYRPPAGMSENLSMFLHNVIKKGDTEKKKNILLGDFNMNCFLYNNDYKVKSFYDTFFETGSIPLIN
RPTRVTINSATLIDNIISTDIFNKGIKKGILKTDITDHFPIFVTIDTYTAKNIDNKKVLKKRIINQNNLNLFKDQLSLLH
WNNININNNANDIYETFFKTFYSVYDANFPVVEIIAKPKSLNSPWITKGFKKSSKIKQKLYINFLKTKTTANEKIYKNYK
YLFEKIRKNLKKKYYSELLNKFKYNTKRIWEIEMKEIIGKQKSCCFGFLPQMIKIENTSIFEPNAISHEFNKFFTEIGPK
LSNKIPITRTLFSDFLLSLEKCICSDELSSDLSIEELEKALKSIKKNKSCGPDEIDGNVIIDCFKQLKDVLFKVFNASIK
QGIFPEQLKIAKVTPIYKDGDQSQITNYRPISVLSVFSKILERIMYNRIYKHFDKNNLLYVNQFGFKKDSSTEHAIIQLV
NEISKSFEQSKYTLGIFIDLSKAFDTVDHHILLKKLKYYGVNNQALRWFRSYLTNRKQFVVGNDNYHNNCLSITCGVPQG
SILGPLLFLIYINDLNKATNLMSIMFADDTNLFISKSDISELFATVNKELKLLSHWFKSNKLTLNTDKTKWTLFHSNRKK
KFLPLNLPPIFIDEIEIKRDSVIKFLGVYLDENINWNQHINYICTKVSKNIGVLYKARTYLNKKHLRQLYFSFIHCYINY
ANIAWGSTEKSKLLRLYRCQKRAIRIINFADRFSHCKPYFIEMKILNVFELNVLKILCFVYMWKNNLSPPVFKDFFSLKP
SNKYTLKRKNFFNEPFCQTNFNQFCLAYRAPHLWNKLVLPNVDFDRPNSFCLFKNKIKNLIFSLDNILEYY
>CR1-61_HM_gag#LINE/L2 70-774   [Hydra magnipapillata]
MAKNFTPAQLKEILENHENTMMKIFNDRIEKMEIKFNNLKDENFTLKKELSEVQKAVEFISKSYDKIIIELTELKKTESK
KSPDESNIENGTNNIKEKIAELEDRSRRNNLRFIGIKDKANETWEESEQKIKDFLNTKLNIQEKILIDRAHRVGKENGKN
RSIIVRFQNYKDKALVLNKYTTMKLWNERLYVNEDFSDFTMDLRRKLFKEAKELRAKGKFAKVVYNKLITRDLL
>R1-1_DEu_gag#LINE/R1 208-1839  [Drosophila eugracilis]
MMVNNAITPGGNHSSGNPPVGKPTVGARILEAPNTIKPTTDEAVASLAAPAAKATSXQSAEQSSAFMSSSKILRSPIMQA
TRSTAMPTGGVPAGEDKETPKRTREQSSPSEPQRATPAKRTRASTGQPCSSMLAELEEILEDIIQQTHEKQVRSINLKMK
RMFCRMKELQEGLSGILSNPSDVGTTAVAAEVVCARCGQADIAKTDQSTQTLPTRRREAAAQTDPWRRLSQDSAAPPPRG
APPASAKAPKIRAREGSTQRTSSHPDARTAGVGGQRMAAQTAASGPGWETASRRKPRTSTRPDALVVEGKGMKYSEVLAL
VTRRRDGQLKEFSQNVHKVRRTATGNLLLELAKNRTDSTDAMRENLEKVLQGAAEVRALSEDSKTKYLEIRDLDPLATEV
DIRLALTEQFEVDGKAVRLRSLRAKTWDTQTAIIGLPSKIATVVASKGRVRIGWTVCRIRERQSQPRCYRCLEVGHIASQ
CRSPTDRSGCCIRCGKSGHKIANCPNESTCFVCATKGEKEAKHLAGSRRCPLSIGAVKDKTGCK
>R1-1_DEr_pol#LINE/R1 2511-5516  [Drosophila erecta]
MPYEYQATEKVKIIQINLNHCEAAHHLLSQTMRETQADVALISEPYXRTPGMDYILDETRSAAILTNGVSRPRNLRIGSF
YVRGVVGDLCLYSCYLPPRLTLQEFSAILEDLANDARGERNVVIAGDFNAWAEEWGSVHTNARGRTLQEAFASLEVALLN
TGSEHTFSRAGAGSVVDLTFCSSSLFQRAQWSLSDVYTASDHKAIICDLTSRRRTAAPPTQRQFNPRTLQRDTFLRELGN
PXIGGNAADSVECLTRAVETACRASMKVSRSHHRHREPVYWWTEEIAEARRNCLRARRRQQREQGLPNNEFRRQEYAVNR
RTLKRLIKQSKRRCFLDLCDSAEQDPWGSAYKIVIKKLSQAKPLKAGDAAHMTAIVEHLFPAVPLAPQAADAAPADASAL
IFTXDEXRKVARDXPSGKAPGPDGIPDIAIKLGMNEHPEAFAKVFNQCLTEGLFPKRWKRQKLVLLPKPNKPPESPSSYR
PICLIDHLGKAFERCLSSRLQVAISAAGDLSPMQFGFRKARSTVDAIATVKEIASKAVQGTRWQGGTKEYCLVVTLDIRN
AFNSARWDVTIGALRNLGVPDALVGILKSYFSDRVLVYDTEGGTLEHRVTCGVPQGSVLGPLLWNAMYDGVLRLPLPGRT
KVIGFADDIAIVIVAKTVREAEGLGNASICTIVEWLTSVGLDIADHKTEAVLISSRKQVETATIQVGGATITSVRAIRYL
GIMLDTRLSFKEHLAETNRKAASVARALARIMLNCRGPRQGRRLLLQSVCRATALYAAPIWAEATNRQSYIRGLEATHRL
CALRVCSGFRTISDDAAQVIAGTIPIDLLAVEAKEIYDAIKQIGEECSTAQRRAIKANARAHSLERWQSRWQQSTKGRWT
HRIIPDVTRWTLRRHGEVNFWLTQILSGHGCFRSYLTRFGHDDDRNCPECGVEETAEHIIFNCRRFDRDREGLMGNIMEP
STLGERMISDQCFWGQFSNFAADSMKRLRAAERERARIRPPE
>R1-1_DGr_pol#LINE/R1 1649-4714 R1-2_DGr_pol near-identical. [Drosophila grimshawi]
MSSRLLQLNCQKSYAVMCDVGGMIVRRGSVVALLQEPYVTNGCVRGLPAGMRVFPDSRANSAVVVNDVSIECTVVNSTDW
GVCVSLSGNFGRLFVASVYCKFGDPLEPYIAYMDEVLLLASSVPFILGIDANAPSPLWFSKISRSARYLNRSRGEVLAEW
AVSQDVRVVNEPSEWYTFAGPMGQSDIDVTLANVAATSVFGFQWSVLGGHGVSDHNPIEIVITHTSTTRESDGGNRWRTC
GANWPLHGIFVSEAATQVPLSTFSAMNVDEQVVCVNRWVTCANDRLFERHRKVNLKRVKWWSHELSVKRRSVRSLRKRFQ
RARSANAENAGQLRLAYSQCMNEYKQMLVRVKEDEWRSFLERNKDDPWGRAYKVVRGRRREADVSGLRVGDVQLTAWSDC
MNVLLNEFFPRADHQNLPPSVVGDVDPLLDSELEVAFSMLKSRKSPGMDGFTGEMCKSVWKSIPDYMNVMYGKCMNEGYF
PNEWKCARVIVLLKSPDRVRSNPRSFRGISLLPVLGKVLERVMVERLQERVSSQMSDRQFGFRKGRCVEDAWRFVSDSVE
SSNSRHILGIFVDFKGAFDHLSWPSVLERLSECGCRELAIWESYFSGRRACAVGRHESVSLNVVRGCPQGSICGPFIWNL
MMDTLLWQLERVCKCCAYADDLLILVEGQSRADVEASAATYLRVVYEWGLRVGVSLAMDKTVTMLLKGRLSRSRPPLVRL
NGVSLRHVSEVKYLGIVFGERMCFTPHIAYVKGRLLSLVGQVRRILRSDWGLSRSAARTVYDGLFVACATYGSSVWCKAV
LTVVGRKNVLACQRVMLLGCLPVCRTVSTEAMQVLLGVAPLDLEIRRRSLSYRIKRRLPLLQNEWLADRDVESLGLSECK
KLLNECVLSDWQVRWDTSENGRVTHRFIREVTFAVDRPDFRLHLSFGFLLTGHGSLNAFLHSRRLCDSPECPCGWVGETW
EHVLCECPLYADLRDLSVLGITRGISGYDVSQVLSTCEGVRRMSEFARAAFARRRLIRGEVG
>R1-1_DT_gag#LINE/R1 135-1583  [Drosophila takahashii]
MSGRGSGAQHPGASLGVAPNDSGGTPANKGLAPPPNADGFHTPLSSLPDWANMGADPFKKSTAMARSPEKRVECGGKQPG
TPPVGGKSTPKAADEEQGDVLKQLSGLGSKARELKRLMDGKRSITNPMRDIVDEIDYLQREVLSAVQGIIEEQEKAKETA
NKTCAEVLASGNSKRPRGQETGKTLAVPAKKAMHKAPDSNASQSAKKGKHAGTESTSKPKKPGKKPEEWQQVRQKTRKPR
MRPPRNDAIVIATSSGGSYADILKKVKAEPQLKELGQAVQAVRRTAKGELLILLNKVSDPKTAELQNTMKAVLGSNVDVR
ALTETMLVEVKDIDEITEKTDILCAVKSQFDVELPESAVMSLRAAYGGTQTATLRVMPDIGRRLIEKGKIRLGWTSCRIR
PKITPKRCFKCMEFGHIAGNCRIQEDCSKCCYNCGAKEHQARGCKAKACCMLCKRKKEKDCDHPTMSGKCPYFRRAMQGL
RGK
>R1-1_DPer_gag#LINE/R1 476-1855  [Drosophila persimilis]
MSDQREQAAACSTPLTSSFAWDEENPFRRRNALARSPNQPAEAVEERARSSPPTLQRPQEEQADPKERAMAHLASLGQKA
RELRKLMVLPKRSITNPMRDLVDEIEYLQRELESCWQAISAEQAVAKVAQPAVTERAGKRARPEPRNTTHPSPSPSPRPK
KPKHGPKKSKKTEKKPQEGQMRDAVARKGPEDAPKEREVGWVKVVARQRPKPKQQQRPRPPRSDAIVIAATGTVSYADIL
RKVKTEPSLKKLGQSVQGVRRTAKGELLLMLEKSADPRTQEMQAAVKEALGSTVEVRSLTETVILEVRDIDEVSTQEEVL
AELKAQAGVEICEAAAISIRPAYRSTQTLTLKVPPAIAKPLLEKGRIRLGWGYCRIRPKSTPRRCYKCMEFGHIAPNCKS
SQDFTKCCYNCAGADHQAKDCKDEPSCILCKRHRVKDPKHQTTSSRCPQYQKAMQQMKDR
>R1-1_DEl_pol#LINE/R1 1700-4618  [Drosophila elegans]
MVKVLQINLNHCRAAQDLLTQTAIEQQADVAIXSEPYKAKHEGVWQHSADGRAAIWSCGQPSGHLSQRASRAGYTRAMFR
GLTIYSCYIAPSVRISEFRAIMQEIADDARGRSPILIAGDFNAWSTTWGSASTTQRGTILLEALASLNVCLLNEGNRPTF
SKSGRESIIDLTFASPELARNCAWRVSDIYTHSDHALIITQTRPRLASPSSRLTSYKAHTLNTVALLAHMEGVCVTGDAN
TCAKNLADRVKAACDASMGKAMKGGNGRRPVPWWNEEIDGARRDCLAARRRCQRSRGRGNQELSEATYRAKRKVLKNAIK
ASKARCFQELCEAADAEPFGSAYRMVMGKLNRQPTPTDHLQLGNIVATLFPTQPPLTWQATGLGDTVLTSEAEVLAALRK
TKAGKAPGPDGIPNAALHTIVAAYPGIFAEMYNKCLIQRTFPTGWKRQRLVLIPKPGKMNDDASSYRPLCMLDTMGKIFE
RIICTRLEKELDDLGAFSDHQFGFRKEKSTIDAIRAVTQLAAKAIEGERWIGGSKEYCLVCTLDVKNAFNSANWNLVLRA
LRLMGISDYLTDLVADYFKDRVLTYSSDVGEHEYQVTGGVPQGSVLGPILWNAMYDGILRQALPEGCTVVGFADDIALVT
VAKTLEEATVRCSLSIDTLMSWLADNGLSLAEHKTEAVLISSRKIVEKATIRVGSTLIASSDSIKYLGVMIDHRLSFKTH
LAYAAAKASRSTASISRMMANTRGPKQHSRRIIATVVTSTILYAAPIWAEAMKTATYSRQCKAVYRRCALRITSSFCTVS
EEAALVIAGTIPIDLLAAERRTGSTGSRTQRSSTIEAWQRRWNSASTGRWTHRLIPSLIPWLQRRHGQVDFYLTQMISGH
GCYKEYLYRFKHEPNPCCDHCGTASIEDAEHAFFICPLYARNRAEAELRTERFLTVDNVINCMLENQRNWDAVANLAAGI
LKDLRRREQSRRN
>Proto2-6_CS1_pol#LINE/Proto2 1309-4374 [Capitella sp. 1]
MDPQSDMNKLKLCTFNVHGVHNKWTYLQELLVEHDILFIQEHWLRECQFHLFNDNLVNVNFASVTPMDDGLLLSGRPHGG
CAVMWRTTIAHRVSPIIHSNTRISAAMIEINNVSYLCCSIYMPCDDNTNIEVYESVLHDVMTIALEHSADHLIIGGDLNT
DLSRSHSLHTMSLKLFVSNEDLVIIDDSLGIPYNVDFTFESTTNASRSILDHFIVSHNIVPHVMSIECNHDVNNSSDHVP
LTIELNVNTKYVKAESTGTRPKPQWHKATNEDLDAYRSTLDVLLQNIVIPEAALECSSSQCTNEMHREELLKLHDSLIQA
SLRASEHAIPSSSTDLAKGRPTVIPGWNEYVAPLKSTASLWHFIWKECGRPQNGIVADIRRRTRAQYHRMIRQVKRNEAT
IRSAKMAEAFHDTRNHRRDFWSEVKKVKGGSGATPATVDGVHGADSIANTFCEKYADLFNSIQTTDEEMSCISDVLSSKV
HNHEQADECSGHFISFEDVRTKCAELKSNKHDGYLGQYTDHIKNASHRYLCILSLLLNSILVHGVIPDAFKVSTVIPIPK
NKRKSLNSSDNYRAVALSSVVCKLLEKIIMSKFNDVFYSSKYQYGYKEKHSTTHCSFVVNEIINYYAQNNSCTYVALLDA
SKAFDRLHYGTLFRKLIDKKLCPIVTRFLLEMYKSQLMRVKWCNSLSRTCEVSNGVKQGGVLSPLLFTVYLDELLERLKS
TGFGCHIGTTFAGCFAYADDIVLLSPTLLGLKKMLHTCAAFSADYYVKFNPNKTKLVVCNSHSNVSPVVNFLGSNIEVVN
DEKHLGTLLGNVSAQTRINEGVHNLLMKVNHFKCHFKTLPSDSAYSLFKTHCMAMYSSPLWDLTDRSIECFYVAWRKSIR
RLFDLPYRTHSRLLHLICNDLPIASQLLVRFHKFILSLQNTSNSLTRLCLQLALSGSRSAVSNSMSALSSRLHISRLDML
DLDSSTVYKALFSMHLDLLDEDTAVHALLLKDLINMKFDAITSNEYNLSEICHSINYYCVL
>Proto2-6_CS1_gag#LINE/Proto2 84-1325 [Capitella sp. 1]
MSGDNTPADLRSRSGSIVDGSEEKDRSSDPCPCNVNASSSVCNSVLGYLVGSLKKSPRDVVKKIALSHFCPDEIKTAKQA
LWSSSACVPAIGPWKPRKGSSNKPRQEFEIDDIFDALSKLDEASVKPVIHVPALDLDLLPPMNPAQLLPVIFLDKMNEME
AKMAAMQAQIDNLGKREQVSGHGRNEMAHRSTSRSDSRRSTGQQTKTRPAVPNPAGPAPPSMSAGSHAKSPPQDPERWPD
RQDTASTSVKRVDTGEEETKQEHSNEWTEVVKRKSKKNPLKERVRKAAKEAEVIVGTKVDEGLSASNPIKHLFVNRLNNY
HGVDDMKSFLLKNQVQARGIKKTSKDEWMKASFKISLNEGDFEKVFTPGFWPEGVQCREWIGYVPPVSKSDKKAENSQPV
EEVNLTTDDGPTE
>LINER1-3_NVi_pol#LINE/R1 1893-4812 via tfasty with LINER1_pol, 1 frameshift. [Nasonia vitripennis]
MARILQGNLHRSRLAHDLLTQHVREQKVDVLLISEQYKNLDPPFWVSNDEKTAAIWVPGRGLANTGTGEDYVRGRMGRIT
FFSVYLSPNLTAADFTRKLGALEDAIREVPGEIVIGGDFNARATEWGMPTTNPRGRAILEMAARLTLIVANEGNTTTYRR
TGFGESIPDVTFASEMTIRNIRDWHVTEEYTASDHQYILFNINEDRQTSTRRNHSRAPRWNTRRMNRETLAELIQSANLP
SNGIPHELGGRERAETIVERTTNLITEICDATMPRVSTSHQRRPVYWWTDDIAELRKENFHARRRAQRAWKQKRPEARDL
SKRQDESRKILRDAIKESKRRCWTKIIDDVEKDPFGDGYAIVTRKMGEMKRNQSKEPIEAEKMEEVIHRLSSHTTHQTPE
KRHKSNGGREEADFTGQTHRVSVVPQPELLLEMYNQSLVQGVFSSRWKRARLVLIEKPKKEADTDTSYRPLSLLDTMGKT
GEALVKPRILRAVREAGDLSDKQYGFRKGRSTIGAVREVTDTVKKVEEVRHATRDIVILVTLDVKNAFNSARWTDILAAL
ESFGMPRYIMRLTEDYLRDRVIEYDTKEGHRRRPITAGVAQGSILGPDFWGILYDGLLKLEMPGDVMLVGYADDVAAVIT
ARNVGIAQAKLNAIMSRVLWWMANHGLTLALDKTEIVLLTGKRIPTIIPMKVGGETITTKPSAKYLGITLDTKLNYGEHL
DRVCKKATTRIAQLSRLMANVRGPRPTVRRLLMATTNSILLYGAEVWADAMTMNKYRKKIMAVQRRGALRIACSYRTVAA
EASMVIAGVIPVDLLAIERKRIYEARLASSSISIAVEEREITMRNWQTRWTDYPKARWTRTLIKDVGPWVDRKWGEVNFY
LTQFFSGHGYFRSYLFAMNRVATPGCKYCGDERDDVRHTFFDCPHWAEKRRVLELTIGAFTPETVVETMLGSKQNWDEIT
AYVETVLRAKNND
>R1-1_DAn_gag#LINE/R1 715-1938  [Drosophila ananassae]
MXPPPISGIRVDQYRSGTQEMGKASLEDLGKEITLLVEMLEDGKRRSIHQPMRDVIESIRTLYERLAAQKDEQGGKEAPK
THQASQTSPLFRPVAEPRRKGVGPNPPSTKRSRREPSHAATQTRAGTGQPGQPTEPDPGTQRTKDAPKWKLVGPKKGKNQ
RRPNPAPKEKPKPDALVITAKGEASYADILRRVKQDKKLQELGEAVTRIRRTQKGELLLQLKKSGEDTAGYRALVTESIG
DEVEVRSLSHKIEIECRDLDEITTREEVAEAIGKLVETPGLPETDILLRKSFGQTQTAIIRMPAGSARKVLDIGWVKVGW
VRCRLRERTRVIKCYRCLEFGHMAKQCQSAIDRSRMCRRCGKDGHMAKNCAEEPKCAFCTSAGKDAGHVAGSGKCPIFRS
ALLNTKKK
>NotoAg1_pol#LINE/R1 1829-5293 gi|28569888|dbj|BAC57922.1| reverse transcriptase [Anopheles gambiae]
MSSLRVLQLNVDHCREGQGLALQSAREHRADVLILSDMFTPPNNNGRWEFDASRKVAIVATGSYPIQRVWGSTVPGLVAA
KVAGIDFISVYAPPSLSPQEYERLLEAVELEASSHSHVVIAGDFNAWHTEWGSRRNNLRGEELLQMVEVLGLSILNNGSA
PTFIGRGAARPSVIDVTFATPSLVLHDTWEVLDFARSDHQLIRFETNSPALAARRVKLSQRNRSQQRSPRRDPPINRQHT
PCAGRRWKTKQFRENSFLLALKDVNFAEQAVTDADIVEMMTRACDEVMQRANHLSSNPYRDLYSWSPELERLRGICLAAR
ERLRLITDLQERSFVAADHRTAKRNLEKAIRASKRQQIDALIDTAEDNEFGGGYRVVMSTLRGSRVPQEKDPIELGRIVS
DLFPNHPPVPWPYVSDVTQGEASVDDVTPRELQDIAHQMATRKAPGLDGIPNAAVKAAIGMYPDVFCRMYQDCLTRGTFP
SEWKRQRLVLLSKTGKPPGESSSYRPLSMLDALGKVLEQLILNRLNKHLEDPDSPRLSDAQYGFRRGRSTFSAIQRVVDA
GRRAKSFRRTNHRDKRCLMVVALDICNAFNTASWQSIADALRNKGVPSALLNIIGSYFEERKLIYNTSAGPVERHISAGV
PQESILGPTLWNVMYDGVLGVELPPGAELIGYADDLVLLAPGTTPAAAAVVAEEAVSAVDRWLREHHLELAHAKTEMTVI
SSLQQPPEDITITVGGTEVPFSRTLKYLGVRLHYNLSWVPHVKAVIQKATQIVQAVTQLMPNHRGPKTSRCRLLAAVADS
TMRYAAPVWHGALTNRECRSLLKRVQRKAAIRVARTFRTVRYETAVLPAGLVPICRAVAEDTRVHSRRGTGVSSSELRKE
ERQRTIEEWQTTWDADAAADNASRYVRWAHLVIPDVGAWQLRNHGEVTFHLSQVLSGHGFLREYLNKMRFTSSPACPRCP
GVVEGVEHVMFECPRFAEVRSELLDGVLPETLEAHMLQSPTNWSNVCEAAKRITSKLQRCWDDECAILAAQAMLEEPANR
LDPEAVRCTRNDLRNVARRTQTVRQREEQCGERPSMPSSSPRTSERRANIRARMARLRQRHRQHQQDERRGVEGGDIERG
ESVYPELASSPNNRQGGLTSAEKAAAVEADVASR
>R1-2_DEl_gag#LINE/R1 749-2020  [Drosophila elegans]
MDATAEIGCLQAFDKRPKVGRTPPPSAPPVLAGDMFPFERAGESETPKRGRDAMSPSSPEKQAKKSKCQKPPVELVLDLG
NXIDGLISTCIEKKPAVRHINQSMKDTLMSIKEIQLELSERLEEVEAAKGRAATQTTPGLASYSQVARKANLPGPEATKP
PVLENRARPRMSGQTTQRNADKPIRRVRPDALVIAGAEGHSYSEILNMVTRRDDNELEEVRKNVRRIKRTAKGELLLELD
GSARSDTQAIKEDIGRVLGDHARVRAIVEEIHLEIRDLDDLSTKEEVAAAVSAATGHQVDASRVKALRSAYAGTKVAVLG
LVPQIAAKLLAEGKVKVGWSNCRVRERSAERRCYKCLEFGHIAARCKSGVDRSACCLKCGKPGHKVANCSQEANCFLCVG
ARKTAVNHIAGSRRCPMSKKPSEK
>R1-4_DK_pol#LINE/R1 845-3772  [Drosophila kikkawai]
MVKFLQLNLNHCRAAQDLLSQTVFEEKIDIAVLSEPYKSKAEGVWQQSADGGAAIWSCGQSPGHLSQRASRPGYARAKVQ
ATTIYSCYLAPSLHIDAFRDILQEIARDARGRSPVLIAGDFNAWSTAWGSSKTTQRGTILLDALATLDVCLLNDGARCTY
SKAGRESIIDLTFASPELCRTSHWKVTDLLTYSDHAAIITQTTHSQQGPSLRQSAYKVHTLNADTLLSSMDGNVITGDAN
TCAGILSARIKAACDAAMASSTRGNGRRPVPWWNHEISVARSECLSARRRCQRSRGRPTQALFETRYKEKKKALKIAIKT
SKSRCFQELCDAADQEPFGSAYKLVMGKLYRPPTPTSQEQLGAIISTLFPSQPPLVLPNIAASEAIFTNEEEILCALASS
KAAKAPGPDGIPNAALHAIMKSYPSLFAQVYNRCIAERTFPRVWKQQRLVLIPKPGKMNDDPSSYRPLCMLNTLGKIFER
IICNKLEREIEERGALSNQQHGFRKKRSTIDAIREVTLMAANAIEGERWQGGTKQYCLVXTLDVKNAFNSANWSLVLQAL
QHGGISGNLTLLIADYFKDRVLLYTSDDGNQTHHVTGGVPQGSVLGPILWNVMYDGILRLPLPDGCAVVGFADDIALVTV
EKHLSDVSAKCSLAIDMMMSWLKDNGLSLAEHKTEAVLISSRKTVEKVTFRVGSTYVESSPAIKYLGVMIDHRLNFKSHL
EYAAAKASKATAAISRMMANTRGPKQHSRRLIATVVTSTILYAAPIWAEAMRTVSYSRQCKSVYRRCALRISSCFCTVSE
EAALVVSGAIPIDLLAEERRTGNSGSRIQRSSTMARWQDRWNNASTGRWTYRLIPDLVPWLQRRHGQLDYYTTQIITGHG
CFKAYLHRFKHEVDPYCDYCGSAFTEDAEHAFFVCPLFSAERAALEAAMNCRLTPDNLVGCMLETPSKWNAAAEMAATVM
RELRRREQTRRTEGDR
>R1-4_DF_pol#LINE/R1 350-3286 [Drosophila ficusphila]
IRFYQLNVNHCRAAQDLLTQTVREEKTDIAILSDPYSPKQEGVWHQSSEGGAAIWSCSQPPAQLTHRKASHYFARARYRN
SYIYSCYIPPRIPLPDFQIIIEEIAQDANEKSSVIIAGDFNAWATEWGSRSTNPRGRILVDTLAHLDVCLLNSGNASTYC
SAGRESIIDITFASPELSRISRWAVSGRYTHSDHNAIIAEFHSTAAQNRRVPMRQVGYKDSTFNRNVFLSSLQEISMAGD
SNTCAANMADAIKSACDASMGKAYTGGNRRCPVPWWNEEISRARNECHSAKRRLQRSRGRPHFDQNLNILRGKRRLLSYL
IKRSKSACFQELCEAANAEPFGGAYKLVMGKLNRQPMPTCPTQLEHIVATLFPRQPPLIPLMGPTPEVEDAALTNTSEVL
EIAARLKAKKAPGPDGIQNTALKTIIAARPDTFVELFNKCIGEGTIPRRWKTQRLVLIPKPGKQHEDPSAYRPLCMLDTT
GKILERLICNRIEDELESRQGLSNHQYGFRKHRSTTDAIGELVRIASNAIEGERNKKEYCLVCTLDVKNAFNTANWSKII
EALIQKEISPYLIKLIESYFEERTLLYDTDTGEKQQQITGGVPQGSVLGPLLWNIMYDGVLQLVLPAGCTLIGFADDIAL
ATVGKKLEEVNVRCSAAVDQIINWVTTNGLCLAEQKSEAVVISSKKKVENTSIRIGSTTIDSQPAIKYLGIMIDHRLKFS
QHLHYISRKAATVTTAISRIMANTRGPKQQSRQLLAGVVTSTILYGSVVWASALNTPSYSRECKGVYRRCALRVACCFRT
VSETAALLVAGMIPLDLLAAERSRGTIVNQDQRDATIVHWQARWESAPNAHWTRRLVKNVRPWLKRRHGQVNFYLSQFLT
GHGCFKAYLFKYKHADDPICDNCGAGVIEDVEHCFFECPIFQRERDSLLNGNGSLLTADSVVDYMLSNEDQWNAVAHMAA
TIMKELRRRERSRSSRTTR
>R1-5B_DK_pol#LINE/R1 2522-5503  [Drosophila kikkawai]
MQLIQLNLNHCRAAHDLLMQTVRDLDADVAVLSEPYKAASTHGWATDRTGKAALWMCGREPAHMSDVRSADGFVRGRVGG
VWVYSCYLAPSLTLEAFSSIIDELSDDIRGRSNTLVGGDFNAWAQDWGSPSTNARGRIILEAFASLDIALLNEGTQQTFN
RAGAGSVIDLTYASSALACLARWRISEIYTASDHEAILVSLGENPPRRTVPPSANKAYRQDTLNAQAFSSALAGLATDET
DSANDAALKLAAAVERACNASMQKRKSFRKHHAPVYWWSDDIANLRSSCLRARRKVQRARGSPNLPARSEAYRIARAALK
KAIKSSKRECFLKLCDDVEKDPWGGAYQKVVKRVSAGSKAPTDPEALEGIVRVLFPTGQPLNFHVSSESMEICPVSEQEI
LVSARTLKNKKAPGPDSIPNRATKLLLTLHAKAIADMFNKCLAEGXFPERWKRQKLLLLPKPGKPAGEASSYRPICLLDT
IGKVFEKTIVSRLEAAIERAGGLAPNQFGFRKRRSTLDAIETVTNLAANAIAGARWKKGAKEYCLVVTLDIRNAFNSADW
RRTLEALEAFGIPGYLLRIVRSYLSERSLIVDTSQGTRTHEVSAGVPQGSVLGPLLWNTMYNGVLNLPLSSNTTIVGFAD
DVALVVVAKELADAETAANSAIRAVESWLAVAGLELASHKTEAVLISSRKRVETAEIRVGGLPITSQRALRYLGVILDTR
LCFREHLEYVHKKASETARSLSRILLNTRGPKQCKRKLLTSVVTSQLLYAAPAWAEAVKVRSYVRGVEGTYRLCALRVAC
AFRTVSDDAALVIAGQVPICELVREAQEARLSREPGNSSARREARSSARRRSIARWQSRWDSSTKGRWTHRLIPDVQSWV
DRKHGEVDFYLTQALSGHGCFRSYLKRFGHDTEDHCPECGTGVEENAHHVLFECHRFHHERLALEEVVGAAIGADNLVPT
MLASQKAWDATATFVASVMKTLRTLETERRMRAE
>R1-7_DWi_pol#LINE/R1 1535-4534  [Drosophila willistoni]
MFSFTQLNLNHCEAAHELLKQRVRETKSDAAVISEPFRRKTSPNWAYSTSGKAAIWACGNPPSQLLSRLAGEHFIRAQVK
GIWLYSCYLPPSLCLTDFCKALDELXTDVRTHSPTIIAGDFNAWAQEWGSSSTNARGRALLDAFASLDVELLNHGTQNTF
NRAGRGSVIDLTYVSSGLARXSAWKLDNCYTASDHEAICVTIGRETDRRQHAAHPLPIDMPFKEDTLDPQAFSSMLTRQS
LTATTAQEMANEACSMLAAASTASMAQSRPFRSHHKPVFWWNGEIADLRRSCMAARRKYQRARKRMDSDWTHHHAHYSSA
RRSLKKAILSAKREVYLQLCDSAEHDPWGRAYKIVVKRIHANRQLVPSDAEEVSQIIDGLFPNRPVSPSIAQHPVPASHT
IDAISSDEVLAAAKSLQLGKAPGPDRIPNRAVKLALTLRPDVFAAVFNRCLTEGVFPEQWKTQKLALLPKPGKPTDTSPS
YRPICLVDSIGKVFEGLIGTRLNAYVSECGGLSANQFGFRKARSTIDAVSKVVGIASSAIEGTRWKGGSKRYCLVVTLDV
KNAFNTADWSCIISAIHELGVPPYLLAIIRSFFRQRILRYGTSDGPKSRNVSAGVPQGSVLGPLLWNLMYDGVLRLPLPP
GCEAIGYADDVAIVVVAKELEKAESVASQAIASITRWLQSVGLALAAEKTEAVLISSRKTVEHASVQVEGSTITSKRAIR
YLGVWLDTRLCFREHLENVQRRAASTGQALSRLMLNTRGPKQERRLLLMSVLKSVILYAAQIWANAIHTTAYSRGITATY
RLCALRVCSGFRTVSEDAALVVAGMIPINLLADEARNIADAKRNGTPKRTASGDARMQSLAIWQERWDSSSKGRWTHTLI
PTIRPWIERKHGQATFHLTQFTTGHGCFRSYLHRFGHEAEPYCLTCGEGMVEDAEHALFACRRFTSQRRLLEETVGTVLT
TENLVPTMLADAAAWEAVSSFTGFVGISLRKAERERNGHT
>R1-7_DWi_gag#LINE/R1 331-1539 via tfasty with Waldo-4_AAe_gag, 2 stopcodons. [Drosophila willistoni]
MQPKKSKLQQPRGKSELAEMGALLEEIAERIKPEKEGGKRAITNALREKVERLKELQQAVSTFWQRxRPRNSSGMPQVHQ
SVPRHKRATNGEAATAAxDAPPESSRPAANTSETVSPKNRRPRETFSSHDNEGIVPQTEPAWQTVTARRPTRTLPKKRPA
AILVQRKSGMTYSDMLKLVTRSQDTKLQAVGESVRSVRRTAKGDLLLELNAAGAENVTQLKEDIGSALEGQVEARALSNL
TRLEILDMDGGTTKEEIVQAVSDQLSLKIVPADVKSLRPAHGGNQRATICVPGAVAEAILKAAHLKIGYSVCRVRVSTSA
SRCYRCLEFGHMAAACNSPVDRTNWCIRCGGKDHKAKECRNGFNCCICESRGITERKHVAGSQRCPSITQAGPMKSSRPR
RNV
>R1-4_AP_pol#LINE/R1 1997-4232  [Acyrthosiphon pisum]
MSISSLSVVQLNMGRASSVSDQLLEYCQTHNIDIAMVQEPYTNRGRLTGFEVAPIRSFLSMGTRRRGRPEYLDYGAAIIV
FNPDLIVVPREAGTVENFVSVDLDCGEEGNVTLISGYFKYRVPTPVHVVALDGLIRDANEKTIIALDANAFSKRWFSRIN
DARGEALVSCIDEHGLVVMNTRCQHTTFNGPRGRTNIDVTLADQVLQRRVANWSIDPGATSSDHQLIKFTVAMRTRTFEH
RETRFILRKAAYQQFRLAYEELAARRQHREPNLDHNASSISEDVTAAAMAHAPRARRRKRVKPPWWTNELHEARKAVRAA
ARAMTTTDGRQLFNQKRNVYTSILRRNKINSWRAFCTEEGKQPWGKLYRWLRNGSKRYCSIGLMTRPDGTRCDTIDESVE
LLLNSLIPNDPGQQRPAPAEETLCDIHPISSSTLRDFAWAISPNRAPGNDGITGRMLRVLWPCLESRFLSLTNACMEKAH
FPGSWKSAIVVPISKGEDRDPGLPKSYRPVSLLPTMGKILEKVINHRLQEQIQPNYTGKQYGFTSGKSTMDAVGNLLLWN
TQRAEKYAMTVFLDISGAFDNLAWPALQSDLESIGATPHMRRWIADYLSGRTATMTVGGITKDVRVTKGCPQGSILGPIL
WNVTMEALLRTTYPEHVAIQAYADDIAISIAAQTRVSLIQRAEEALRPALEWAHHRGLTFSAQKSQAMITKGSLAAGFTI
AFGTDRIATVDCIKYLGIWLDEERSF
>R1-2_DVi_pol#LINE/R1 2464-5403  [Drosophila virilis]
MVKFLQLNLNHCRAAQDLLAQTTRETRIDVAIISEPYTPKHIGVWHESLDAGAALWSCGQAPYQLTQRMARKGFARAKCG
RIYVYSCYIPPSIPLAEYTAIIEDIAQDAHGKSPVIIAGDFNAWATEWGSSRTTPRGTILLDIFASLNVCLLNIGTRSTY
SKAGRESIIDLTFASPDVARDAKWHVSDVYTHSDHFAVITDTYQLGSRGASRRLQHTGYKMNTMDLERLLPMVEGLGIRG
DANSSADAIAETITNACDAILTKVRKGGNAHRPVAWWNEDIAKARKECLAARRKSQRSRPSPNFEHHLQNFRAKRKLLKE
AIRRSKSRYFQKLCDAADAEPFGLAYKLVMGRLCRQPMPTNPEQLKQIVLTLFPRQTPGIAPQLPANGINDCAPTDDNEV
LSIAAKLKADKSPGPDGIPNGVIKAVITAQPRSFVELYNQCIAECTVPRRWKLQRLVLIPKPGKELDDPSSYRPLCMLDT
MGKIFERIICNRLECKLAEVRGLSERQFGFRKHRSTTDAIRAVAELAEDAIQGTRWTGGTKQYCLVCTLDVRNAFNSANW
TKILEALTARHIPSQLIKLVTSYFQDRVLNYDTEDGQRQYRVTGGVPQGSVLGPLLWNVMYDGVLRLCLPEGNTIIGFAD
DIAVVTVAKKLDEVTLRSSAAIDRIIDWLSQNGLTLAEQKSEAVLISSRKIVETTSLRVGSAIIKSKPAIKYLGVMIDHR
LSYKQHLEYISHKAASVTTAISRMLANTKGPRQRSRRLIAGVVTSTILYGSNIWAPAMEVASYSRGCNAAYRRCALRVAT
CFRTVSEDAALVLAGMIPLGLMAAERQSGATTNRQLRDNTIDQWQSKWDASSSGRWTHRLIPNLKLWLQRRHGDVDHYLA
QIFTGHGCFKAYLHRFNHEDDPFCEHCGYGVIEDAEHALFYCPLYSRERDKATAGRNDLSPENLVARMVATENGWTAVAN
MASAIMKELRRQERIRRGID
>R1-2_DM_pol#LINE/R1 719-3216 [Drosophila fruit fly genus]
MFSFLQANCGRGRAPTIELXVRLRDSGHLFALVQEPYVDLAGRITGVPSGMRVFSDRRGKAAVYVDSTDSICMPIEPLVT
EFGVCVSVTGSFGSIFLCSVYCQFNTGLEQYLGYLDAVLLLASRTPVILGLDANAVSPMWFSKLPERAQGSANYLRGELL
SDWIQGCRAGVLNMPCDAFTFETPYARSDIDVTLTNDAASTCATYDWRVDEWDLSDHNIINVVVTRDPPNTVESFAPVPS
WNFSAARWRPFEDEVTRLASELPDEFADTPLDDQVSAVRSLVHSVCDQVLGRRRPKTARKIVWWTAELSSKRQEVRRLRR
RLQTARARASHDAEQLVSQLREISDQYKELILKYKEDNWRRLVGENKDDPWGQVFRICRGRKRTTELGCLRXGGRQYVTW
HDCAGVLLRTFFPFSSFRHPLSFLKRFHHRLSSEVDACVARLKSRRSPGMDGITAVIFKAVWRAIPEHITAFYSRCIRSG
YLPSKWKRTIAVALLKGSDKDRSDPASYRGICPLLFVFGKVLEGIMVNRLKDVLPDGSRWQFGFREGRCVEDAWRHVVST
VAANQAQYMLGIFVDFKGAFDHVEWDVVMRRLIDSGCREASLWRSFFSGRSASLVSRYGEVTVPVTRGCPQGSISGPFIW
NLMMDSLLQRLEPLRGFSALADDLLLFVEGTRIVLESKGEQLMSVVGAWEVGVAVLTSKTALLLGHFAQSRHTTVRFAGA
SLPYVDKYRYLGVTVVERLNVLPHIKSLRDRLTGVVQALARVLCVDWGLSPRARRTIYAGLMVPCALFGASVWYDGPSSA
MRHLVSCQRRILLGCLPVCRTVSTVAMQVLXG
>R1-2_DWi_gag#LINE/R1 1176-2267  [Drosophila willistoni]
MVAISAPSQHPTANCGMKDELARMKTVLDGVKTQLESRPRANKPKQKTRPLTFAAVVAKSATPNAAGTRQKAKDREAVTR
PSVVLRQSTTQNTSAAESAEGTIPLQKVANKWETVKRPKRKSRRRPDALMVQCSDPANYAKVLEAVQTDPAMLSHKEGVC
GVRRTAAGELLLEMKKHDDGGTLVLHKALQQALGDEGRVKLITERVTVEIRDIPFYSKLEDVLDAAVKLTEETLPEESFP
KMRKAYRGTKTATMLLNANQASKMIAARTVRIGLAECRIRAKIEPRRCYKCLDFGHTSARCRCKKEHEAGSLCFNCGESG
HASKDCNNDAKCILCTRYGEKNAAHNTLSRGCPLYVKATNKCKN
>R1-3_DK_pol#LINE/R1 828-3824  [Drosophila kikkawai]
MIVVQLNLNHCAAAHDLLSQSVRERGADVAAISEPYRVGPGPYWAVDSSGKAALWSCGITPKRMADVRSERGFVRAKVAG
WWMFSVYLAPSMSLEEFGDAVDRLATDARCHTPCLIAGDFNAWAVDWGSSLTNARGRTLLEAFSTLDVTLLNTGAQPTFS
RAGASSVVDLTFVSCSRASQCTWVLSDVYTGSDHAAILTALDTERAQPTPLPPQARRGYKADTLDIQSFAEHMQRLEANG
SAEQMAESAMIQLQAACDDCMTAKRAHSRHRDSVYWWNETIAAARTECIKARRRYQRSYRSSSHLERRSEFHRCRKALKA
AIRASKTKCFLDLCDTADHDPWGNAYRIIVKKIHGAKQGAPHDAESIDRIVEHLFPRTDNPRDTLEIATHSLEGFEPVLE
TEILAAAMRIREAKAPGPDLVPNRALRLALSLRPDLFAELYGRCLREGIFPGRWKVQRLVLLPKPGKPPEDPSAYRPICL
IDGAGKVLEQLIRTRLEKAIAAAGDLSDSQFGFRKAKSTVDAISKVVGIAKAAIAGQRWKGGAKEYCLIATLDIRNAFNT
ARWGCILDALSSFGVPPYLLELLKSYFRGRTLVYDSDGGVRSTELSCGVPQGSVLAPLLWNAMYDGVLRLPLPGRTELVG
FADDIAVVAVDKDLAGAEELCDRSISRINSWLSSVGLQLAPQKTEAVLVSSRKKVEVATIRVCGAPIRSSRAIKYLGVMI
DTRLSFREHLAYASTKATTAVRAVGRLMLNHRGPKQASRLLLSSVARASMLYAAPVWGHALATPAYSRGLSSAHRLAALR
ICSAFRTVSDQAALVLAGTPPLDLLAAERASIHGQTNGRTLTPREKQVFRSAAKDATSAAWQMRWESTSKGRWTYRLIPQ
LDCWLKRKHGQVNFHLTQILSGHGCFRSYLRRFGHEEADTCTHCQGQLEETAEHTVFSCARFAGERDTLEARLRNTISVE
TLVPLMLMSEENWQAVSDFAAKAMTELRAEERRRNSEAT
>R1-3_DAn_pol#LINE/R1 1553-4654  [Drosophila ananassae]
MLPLRCCKQGRACPRSWQQEMPTRQTRSQRTKKGMRFIQVNLNHCEVAHSLLEQTLREKRADIALISEPFKKAETHNYIL
DPAKSAAIWAPGAQPESIQRGVGFIRAKVGEFWLYSCYLPPRLTLQQFTHTLDEISHDARFKGNVVIAGDFNAWAEEWGS
PRTNARGRALQETLAALDVALLNTGSRNTFSRAGYGSIVDLTFCSSGLQRRTKWSLSEDYTASDHKYIVCDIEDRGQTFA
RANPLRFKPATLQPEIFAHELRIPDPSGDAERDVQETMAAVQQACRASMGSSRGHSRHQEPVPWWSPEIAQARRECLRTR
RLQQRARGRPDFEQKSEDFAAKRKILMKMIKEAKKRCFLEMCDAAEQDPWGSAYRAVVKKAKQAKPIAPKEAATMKAIVE
HLFPTLTCSTPSRARESVGSTPAQTISAQEIVEIAKAIQVGKAPGPDGIPDSAIKLAMSTFPERFASVFNGCLREGLFPR
RWKTQSLVLLPKPGKPPEDPASLRPICLIDHAGKALERCICRRLQAAVIDAGDLSPLQYGFRENRSTIDAISLVKRIAAK
AIEGTRWAGGSKEYCLIATLDIRNAFNTARWDAIVEALNTLRVPPSIIKVVRSYLSDRSIRYETTTGTQEHTVTCGVPQG
SVLGPVLWNIMYDGVLRLEHPERTHLVGFADDLAVVVVAKSIQEAENSCNAAIACVVEWLDRAGLSLAHHKTEAVLVSSR
KRVETATISIRGHSVTSTRAIRYLGVMMDTRLCFREHFAEANRKAANVARALGKIMMNCRGPKQGRRLLLQTVCSSTMLY
AAPVWAESAKISTYTKGLNSTYRLCALRVCSGFRSISDDAALVIAGMVPFDLLAAERSEIFQALTELSGQVPAATRRRLK
LSSRATSIRKWQRRWDESTKGRWTHRLVPDLERWLHRKHGEVNFWLTQLISGHGCFRSYLFKFGHDDDPRCPACGVEETA
EHVVLDCPRFTAPRQRLLGDVQTAELLGRRLLEDAQFWDGLSSFAATTMKELRRLERIRAEARLQAEQPNIAGR
>LOA-5_CQ_pol#LINE/LOA 2106-5786 [Culex quinquefasciatus]
MSSIRCLQVNLHHAKGASSVLSRRFTKEQITIALLQEPWVNNTKILGLPTQNSKLIYCNTQSKPRTAILLRCGIKYTPIT
EFIQRDIVAITVEVPTATGKQELIIASAYFPGDQDDVPPLETTAFVRYCRDVNKPFLIGCDANAHHTIWSSTDINKRGEC
LLEYLSSNDVNVCNEGDKPTFINAIRQEVLDLTLCSSSISEKVKNWHVSDEPSLSDHRHIVFNIEARALETEEYRIPAKT
DWNAFKEHLQGTRMPINPKIRTPMELETEAENLQGRIIEAFNASCPLKKRRVCRDVPWWSEKLADLRKEARRLFNRAKLS
GNWDAHRAALTKYNAELRNAKKESKKRFCESIATMPVATRLQKALSKDHTNGLGQLRTEDGSLTKTNKDTLDVLMSTHFP
GSSTKDEAVTNRPADFNVRRSVPVEAIHLARRMFTSTSIKWALHAFEPLKSPGPDGILPIFLQKAGDIILPEMITIFRSS
YILGYIPESWCKVKVIFLPKAGKPDKTLPKAFRPISLTSTLLKLMEKITDNYIRAEFLKNSPLHRHQHAYQSGKSTESAL
HHLVTLVEKSLRHQETVLGAFLDIEGAFDNTSYGSIKTALLNRGIDATTTNWIETMLISREISASLGDTTVVVKAAKGCP
QGGVLSPLLWSLVVDTLLQNLSELGYEVIGYADDVTLIIRGKCDATISCRLQSGLNYIIHWCTQEGLSINPNKTVLIPFT
RRRKHNISPPVIKGVRLDFSSEVKYLGVFLDRKMNWNSHLDYAVKKAISAIWTCSKLFGKTWGLSPQLALWSYTTIARPR
LTYASLVWWPKVNERTAQAKLNKVQRLACLSITSAMKTTPTAAMEALLHILPLHLYVKKEAENGALRQRRHNINYEGDLT
GHLRIMKEFDITPLVTTVTDCMEARPNIDTPYDTVETTRRLWCAGGPELPPGTICFYTDGSKIGDLTGAGIFGPGIKLSI
SMGRWPTVFQAEVYAIYSCAVHCLKKNYRHAKIGIFSDSQAALLALKAARVESKLVWDCIDVLRELSRRNKVSLFWVPGH
CGIMGNEFADQLARQGSSAKFVGPEPFLGTSKCAVKYELKKWEDNQISSTWFATQGCRQAKNFITPKPAITNKLIGLKRS
ELRTVTGLLTGHCPAKYHLKKLGIVDNDICRFCNTELESSAHLLCTCGAIATRRLNSLGSRLLSPYAVWRTHPKKMISFM
NCIIPEWDKSTGQPTTNSLPPVNGYE
>Loa-2_DTa_pol#LINE/LOA 1590-5177  [Drosophila takahashii]
MPKVVQINLKRSTHASANLAVLLSERNIDIGIVQEPWTRDRQISGLTQQGYTLFYTNSTGRPRAGIIIKNNYNALLCPNL
STPDLAVARFVAADGTSMVIASSYMAHDEPAPPEPVIKLLQWAEDTKTTLVLGCDANARHTLWGSSETNERGESLFDNII
CRNITICNRGNTPTFIFPSTREFQGWEEVLDLTLQTEFSRYKVEKWIVSKQNSFSDHRYIFFEISIPISKPEPKRNPRRT
NWDKFGKIVYSKVSNRRIRVQTSTTTLDKEVEDLTNILNNAYKETCKVSYSKKQHPLWWTKELCTLRKRARKAYNSSYAT
KEWEPYKEAQKAYKKAIYAAKKDSWRTYCESLEGIKDSARLSKVLAKGYNSPTLLHKQDGSATTTVEESLETLVDTHFPG
NLREKPAPTEGQRAHQPTHTRDIITIERINWAINSFDKYKSPGPDGIFPAMLQATQVSISRWLQAIYTACIRLTHIPLLW
KEAKVVFIPKPGRRGHILAKDYRPISLTSFLMKTLERMIDIHIRENTEKQHLSDAQHAYRKGRSTETALHEVVCHIEKSL
HFNQYTMATFLDIEGAFNNVNAESILSSLNSIGIEGDIRAWIGVMLTSRTITAELSGTYLTRFVKRGTPQGGVLSPLLWL
INMNDILRELNSGGVKVVAYADDVVLLVSGPFPDVISNIMTGALTRLNEWAKTCGLGINPSKTELMLFTRRTKIPTYSKP
KIDGIELELSGKAKYLGVILDPKLSWKLNITERVRKASIAFYSCRKMFGKNWGIHPKIILWLYTAVVRPILTYGALVWWP
ALTRAYNITKLTRIQRSACAGATGALRSCPAAALNTILDIMPIELFIKDTAAQSAARLKASKCWKGYHTGHCRILEDSNY
LAKNKTDYMTAEIRFGNGFTTTFPTREDWENDRVTGQDEVSLYTDGSKMDCGVGAGIFAESWGIESKFHLPESATVFQAE
VLAILEAAKLSIQQCLRNTKVRIYSDSQAAIKSLAAARTNSTLVADCKSALNILATNNHVQITWVPGHNDIPGNEKADEL
ARMGSADDSYTTSLPESLNTVQARIHEHYKTQASKSWSEKQGLRRSKLCWPTINSKRTRELITKSKRDIRRITALITGHW
AIGTQAMKMGLPYNANCRSCKETDTQETPEHMMCHCPALNHIRARYFGAYQLESLGEIGKQRITAILGFLNDAGWY
>TRIM_pol#LINE/LOA 2-2952 via tfasty with Bilbo_pol, 3 frameshifts. (fragment) [Drosophila fruit fly genus]
FSDHRYVETVFSFSVPKPVRFRNIRRTNWTRYSDYLCRVLPEPPSEEEFSTEATTRLLKIFTDACNKALDKACLSGKNRG
RRKPEWWNPKLGELRKASRRLFNKAKAENVEQNWAEYKASLSTYNKELRKAKRASWRKFCSEIESNSEASRLRRVLSKTT
PTLGYLKNTDQSWTTSSEESLNLLLNTHFPGCDENRPNYLAPPSVASNAILRLLSQENISWAIRSFKPYKSAGPDGIFPA
QLIHAGYKAINWLKIIYEGIFPDTWLQTKVVFIPKAGKPSHTAPKDFRPISLSSFLLKAMELLLGLHLTACIPSSLISDS
QHAYRKGRSTETALHSITSIIEASLNFKEYTLVAFLDIKGAFNNILPTAITGALTDLGVDSRTVSLIDQMLQCRTVEASL
GTLTCTRFVSRGTPQGGVLSPLLWNVAVNTLLREIEGGGCRVVAYADDVAIAFSGKFPQTLCECITSTLTKMSEWADKCG
LGVNPSKTELVLFTRKYKVPVLIPPRLCGETLVFSNNAKYLGLILDRKLDWKLSIEDRVKKATVALYTCRKAIGLKWGMT
PYIVRWLYTAIIRPIMLYGVVVWWPALDRRTCLNKLSRVQRMAELCITGGLRTTPGEALDTVLDLLPVDLMGKKVATLAA
LRMREARLWKASAVGHSGILMRLPQLPERTDYCIPSDHLSTPFQVSIPSREDWEMGEPGPANAVHFYTDGSKLDGRVGGG
VYCSELEISHCFRLPDHCSVFQAEIEAIKEAISIVSKLRLDTHLVCVFSDSQAAIKALGSISSNSATVKDCRRSLHEIAE
QLDLFLIWVPGHRDIEGNDAADELARQGTTIPLLSEREQVAMPLATCRLLTHELFEQNANRRWQQTVSCKVSRLICSYRS
KKRSAELYRLSRAQCFAVTRAITGHWQIGTHASRLSIPHNDFCRSCRDEEEEESVLHFFCHCPALGNRRLRILGAAFLAD
ISGLSEIKPGTLSKYIQATGWDCP
>Bridge1_FR_gag#LINE/Penelope 684-2497 via tfasty with Neptune1_Ren_gag, 1 frameshift. [Takifugu]
MEPGWTEVRYGRGRQRAHRQQQGFQGYGRSVGRKDRAFPVSYGRQGTFPYPIRPVLPPRIAHYPVPQQRTYAAVVRQGYP
QASQRRVFPRASRPGVQYQYQYQPADPQFGKLVRKLHSVIKTVHHLQNVAPKEGKPEPRMISRMVDILTDMIKPAAPTQR
TKDLISGNAKNWGYNTYLILMEHYEANLAEYLDEVSGLLTPEWRAAFEVAVRWARRNLPRITRDEIDHAQALVTARVDTM
VPAVVQVPQQTTVSTDTRDLACGHSPRQTVVTAATQCCGQCIAQVGSRDEIEGRAETPLQPTTKRAVVTMTDSTGQHSDW
HFDPPYVEPPRELRVGRKCLRKTKHFVPNEDDLLQDDPEDLMGRGTPVGDATLLDLSGLFVESQNEEAEVGTARHEMVVQ
APRGPSLFEEDSFEDSFDHFVEAGPPMFQVLRHPNTQRKLIDWDLVVRKKWLIIGDSNLCSFPDFAIKNLQIDSYPGAHF
RHAQALIEKTEPPLDLVVEKIVLSFGINSRGNSSKGTTVKNVQAALRVAKKKFPYAEMWVPLLNFSNNLPEEERENLQLL
NHHLERNMPFIPLLPGRFFRTGTDNVHWTVETGRAMFHHWMEFLN
>Odin-3_p2#LINE/Odin 6769-7617 [Oikopleura dioica]
MIIKLREKEIKLVNFQELSSIEKLQNANHTLLPSGIIELAFPGLALTNKISARADLTALLEKFENNKISVPIRSVALPGE
PMLETFQKWFNIQNSSFNPFATAIFWAHLINLNHVEXSSPIPNLTGGLALXINFLPRCITAVKNPDPFLTGHIQRTFTGA
PRTLPLFNLAHCHPAFDLSNCGLHVNPESPELLDGWMXVPALLGQLKSHWLDLVPSIPNFKTGIPTQTRDDLIKHFTELH
LVKGDNIIATRAALFCISKALQHNNIEISNPIWQRIAHLSPTI
>LOA-2_CQ_pol#LINE/LOA 1119-4808 [Culex quinquefasciatus]
MNNIRCIQVNLHHAKGASSILSRRFTKEQLGIALVQEPWVNHNKILGLSCQSSRLIYSNTQATPRTAILLSGNIKCTPIT
EFVQRDIVAAMVTVPTTKGKQEMVVASAYFPGDQDDVPPPEVAALVRYCRAVNKPFLIGCDANAHHTIWGSTDVNDRGER
LLEYLTSNNVNVCNKGNEPTFVTVARQEVLDLTLCSAAFADKIKNWHVSEEASLSDHRQIVFDIEASQLKRETFRDPNDT
DWNAFRGHLCRSKQDAPSRIRTPEELDTAANTLQRRITAAYQASCPKKVREICRDVPWWSESLSSLRKEARRLFNRAKLT
SEWDAYKAALTKYNAELRRAKKTSLANFCEDISSMSEATRLQKALSKDHSNGLGQVRDEQGTLTVTNKETLQVLMSTHFP
ESTEREEDAASTRTADGVWCRPSRESVHLARRMFNQSSIRWALGTFEPLKAAGPDGILPIFLQKAADTIMAELINLLRAS
FTLGYIPRSWRKVKVIFIPKAGRSDPTMPKAFRPISLTVTLLKLMEKITDNHIRAEFLKDFPLHKHQYAYQAGKSTETAL
HALVSRIENALKYKESALCAFLDIQGAFDNTSYTAINEALRSRNVDGTTASWIHAMLTSREISASLGDTSITITAAKGCP
QGGVLSPLLWLLVVDSLLRKLTLLGYEVIGYADDVVLIIRGKYDGTLSDRLQSALNCTMSWCEQEGLTINPNKTVIIPFT
NRRKHDLRPPTLKGTQLTFSSEVKYLGVILDKKLNWNAHLDYAVKKATTAIWACNKMLGKTWGLKPKLAFWSYTTIARPR
VTYASTVWWPKTEQKTCQSKLTKLQRLACLSVTSAMKTTPTAAMEAMLCILPLHLHVKQEAALGALRLQRCNNWVEGDGT
GHSRIVKAFDISPLATSVSDCMEVRPNMDIPYEVIETNRQMWSNGGPTLPEGTIRFFTDGSKMGTSTGAGVFGPRTRETI
SMGKWPTVFQAEVYAIHICARTCIMRNYRHAKIGIFSDSQAALLALKSSKCESKLVWECVASLRELASRHNRVMLFWVPG
HCGIEGNEMADELARQGSSNIFVGPEPFLGISKSAVKQEITNWGQLQIASIWGEMRGLRQAKTFITPSPSIARKLLGLNR
RELRILAGLLTGHCPARYHLHKIGRWPNNLCRFCLTELESSAHLLCFCGALVSRRLRFFGSHLLTPYDVWHHTHPKKVIQ
FIDCIAPNWDKPCLQNNPSSSDPMDTSNL
>Maui_gag#LINE/L2 146-1078 [Takifugu]
PILNKYRAPPIISISMASPSVSPGVSPCVCSACEMFSYSSASFSEGNRCRKCSLFMALEARLSELETRFRSLELXGVASG
SQEKVAAAELPSVATASCPPAAAEQPASQGGWVTVRRKRSPNQRPTVHHQPLPVANRFSPLGDTPAEKPTLVIGDSVLRY
VKPTPATIVRCIPGARAGDIEANLKLLARSKRKFGKVIIHVGANDTRLRQSEVTKINIESVCNYAKTMSDSVAFSGPLPN
LASDEMFSRMSSLRRWLSRWCPENQVSFVDNWNSFWGKPGLIRRDGVHPTRDGASLISSNLANFIXPKVT
>LINE2_VA1_pol#LINE/L2 2-663 [Vipera ammodytes]
DLSAASDTIDHGILLWRLRGLGVGGTVLQWFSSYLLGRSQSVLAGGQRSTSRSLVCGVPQGSVLSPLLFNIYMKPLGXII
RGFGVGYHQYADDTQFFISTPNHPSDALDVMSCCLEAVRVWMGRNRLQLNPDKTEWLXIPASRDIQNIPSLXMGGEXLPP
VDRARNLGVLLDSRLNLEDHIVAVTRGAFAQVRLVRQLRPXLDRDALCTVTHALVTSRLD
>CR1-67_HM_gag#LINE/L2-Hydra 148-1448   [Hydra magnipapillata]
MAPRSIEEMFIYLKCDIYTFEENFLKNIEEICSHPKDLVIASMNSISESTIRNLRERLFAEIVETFCADEFSEANITLDL
TNPVEKNLRKRYKTSLCLEDIYILSITLCEKQLHKEIVKVIISTKNVDTLPNDKFLTKSVKELLHISKEIQKENKEIKEE
LILLKEKIIFQNKLIEKLKIENRQSELDISLLQPCQIPKLKIDGYTQCENKINNPAATKNQTQTTHKSFLNVEYKPQLLK
TFANVVAQTHSNTNQPQIDAMLTTKINKKTNIDQQLHASNTNNDENNFTLVCRNSKSNHKTQNRSLVKKHRISEPVFGTK
ISENKTIAGERIVRKFDIFVGGVSNQINEELFKNYLETEIGISPLSVILNKENEYNRSYKVTVNNTEKNIIFNPALWDNN
IIVKPYRKKRLYTNISQNLETNGNQEDFHRSKWI
>Bilbo_pol#LINE/LOA 1813-5410 via tfasty with Baggins1_Cis_1809-5, 1 frameshift. [Drosophila fruit fly genus]
MFLMKSLRLLQINLHHCKAASAALILRLVASGGDIVLIQEPWVVGGRVCGLATKDYNLIVAQTEGKIRTCILARKHLNIF
LLHNFSNGDNTAASLELQGTRLNLVSSYMAHEESDPPSDLVRKIVSDSERSDTSLLIGCDANAHHTQWGSSDTNVRGESL
FSFILNSNLFIGNRGNDPTFIIKNRQEVIDLTLLSHKLLDTIKSWRVLEDHSFSDHRYIETTLSLESTIPTSYVNPRKTN
WDTYSAKMEELLPPLAPKCPDTQDDFNRLVDNFTEACNKAFMAACPSTKPRGKKKPPWWSKHIDTLRKDCRTLFNRAKSS
SEVAHWENYKSKLTLYKKETRRAKRASWHKFCSEIEDTSEAARLRKVLSKTSPSVGYLKRTDGTWTNSSEDSLHILLETH
FPGCTTIEPADTPSEGPETSMGHILTKRNISWAVNSFKSYKSPGPDQVIPAQLQKAGDVAINWLQSIFRKILTVGKIPRA
WLKAKIVFIPKAGKPSHTTPKDFRPISLSSFLLKTFERLVGLQRGKPLNLRLSGAQHAYRKGKSTETALHEVISAVEKSL
HVKEYSLIAFLDIEGAFNNVIPGAITEALTDLGVDRHLVMLIDQLLTCRTVTSSMGSSTQSRYVNRGTPQGGVLSPLLWN
IAVNKILCDLEGEGCKVVAYADDVAIIFSGKFPQTLCELMTAKLARLSEWTKSRGLGINPSKTELVLFTNKYKIPPLNPP
ILNGCRLSFSDSASYLGLVIDKKLSWNLSIKDRVKKATIALYTCKKAIGLKWGMNPRIVQWIYLAIVRPILLYGVTVWWT
ALSKGTITKQLSKVQRTAALSISGALSTTPTDALNAILCLQSPELAGKEQAEMAAIRLRDSDQWVSQRTGHASILNGNNI
VPAKTDYCVPREYTDTPFETIIPHRNDWLEGPPGPKEAIQIFTDGSKLDNKVGGGIYSELLNISYSFRLPDHCSVFQAEV
IAIKEALSCLQELTPEATYINIYSDSQAAIKSLNAITTSSATVANCRKSLHEMAYQFVISLIWVPGHQDIEGNCIADELA
RAGTTIPLLNDKEDIRMPMATCKLRIKEHFKKLTNDRWQTVPLCRITRQTWPNINRKRTDELCKLSRSRCSSVIRSLTGH
WLIGTHANRLGAPYNDFCRSCRDEDEEETVEHLFCSCPALSRRRLQYLGSPFLNDISDMSTISPRRIAGFIRASGWDNG
>Baggins1_gag#LINE/LOA 332-1771 [Drosophila fruit fly genus]
PYPGTADLCPGGPFISLQLVGTMNNRPKNIKIPQALTAGNVARQFEDRLLDGERPTSVVTPKNAPNRSVPTAQARPVAGG
KNRAATPSHSTVVQAGQAGRAKNPLPQLGQPGARDDPNRKGLSGARTKWYLRYLQQGKSPAEALSLAKTPQPLEQRPNSA
SKRANSTLTPPTETPKRQKVEKSRPLTAPFDGPSTSRAAKATEVRKPSYAAVTGAIKVAVVPEGYPKVVLSSENLSQLED
ALLEEIVLSGWDSPIKFGGIHFRVGHLIVDCRNATTAEWLQLAVPSLSKWSGVSLEVKMGDDLPSSHNITIFCPRTGDKT
TKWIMELIKKQNDLDTENWRLISRKNEGGGSLLSLGIDDNSCAKIISSDHKLSFRFGDISVCGLKKAKAIKAGTRRVETP
RNPPVSAEKEKPNKLSESSEDLADDEDLDATVIEMGDQTPISSQELGMELDLLSKEEAVPADGDLGISRSATPTMEPII
>Neptune1_Nv_pol#LINE/Penelope 334-3378 Longer than others; perhaps p1 and pol combined. [Nematostella vectensis]
MGIDITAYRVHIGSFPGRHMARSKPKNISTRQRSPTNLKCTLHNRPAIFMLFVLPILIAKSMDIETNPGPVTNMFMDSSD
PQPLTDNLIYPLTPLFNKTKKIQLKLVRFQHHLINFTFYRVHNLLPQPILPRPPIRSHDRNFNRQWYFISRNAATKHLKL
LTRECNRKIAASSQELLHHRTLLERSCTNNAYIFYCRKLDSMALSLKSLLENRRNNKYSRRNLPNPDNDNTSTITPQAAP
NTNPPPVATPAPQRRRRRRRRRRKNNSVVTLDSTSVINISSTSLSPDETSVLARGLTFCPTPRKIDWSQVNADIYDFNRR
MRLAEYFFNEDKPNDNDTLSFDSSFNPFRNKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNALTQLNQ
RQDIIIKPADKGSGTVVMDKDWYINECNRQLNDTKFYTQLDADITNDIQKRVTTYINRMHTDGIINQDTKSYLTPKDSKP
GRFYILPKIHKHGNPGRPIISSNSHPTERISEFVDYYLQPLVSKLPSYVKDTNHFLNILLTLSNLPTDSLLVTLDVSSLY
TNIPHNDGINACHHFLRTCNTNPIPAGTICDLIRMILQMNNFSFNDKHYLQKHGTAMGTRMAPSFACLFLGLFETNALRD
APYKPHTWLRYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIKFTSSHSYNNVPFLDVNVSLVNSKIETDLYSKPTDKHQHL
LFSSCHPHHTKKAIPYSLALRIRRICSTEESFNNRCNELTNYLLKRGYKPAFLKRQILRVANISRIDALRPNNNNHKNSR
RIPFVTTYNPTLPNINNIIRRNYNLLLSSKRCHKVFTEPPLVAFRRSPNLRDILVKAKLPSDRSPTNQPPGAFRCGKNCL
TCPYIRTDGLTSYTFFSTGETRPITSHITCNTKNVIYMIQCNRCNLQYIGETKRKLKERFNDHRRTVDSQSRSIPTHAAE
HFLKPNHSASDIELIPIEKIRNNRDSIRKAREATLIARAGTLEPGG
>Penelope_Ele2_pol#LINE/Penelope 333-2726 [Aedes aegypti]
MASTLSESNTFIKLKKSIAGLKKDIAFLSECRKLNLTPKSHKIKVRGQVPQDIIKKMESEYLRSSIKKLHSKLNSQTLKC
YSLHLKLAKQYPWEFPLFLTKVIQAEECEARRKKDIHSKKLAILKNKQHNKVVTALPKVHSIEGFVVNRSTQQFSEEQLT
LLNKGLAYAVATKPDIEQTIIDVETAITHTIPIEFQESARNDTEESLKGNKFQLRGQNSDEDKVLSELRDKSVYYVKADK
GNAVVILDKDDYDNQMNEKITTGPYRHFRVDPLPTMVRHVEKTLKECKPLLGDNTSRLKVSNPVLPRIKGLPKIHKPGNE
MREIISAEGSPTHKLAKWLVKEFQSMPKPFESRSVNNTQEFASQLQASGYIQDDEIMVSFDVKALFPSVPVKEAINLLEE
WLLNQHNESNWKNKVRYYIKLTRLCMEENYFSFRGNFYKQTKGAPMGNPLSPFLSELFMANFESILKKKDLLPQRWWRYV
DDVFSIIKKDYLPKILEAINSIHKDIKFTHEEEKDNKLPFLDLLITRESSHFEFEIYRKPTNTMRVIPSTSNHTYQHKMA
AFHHMIHRMQTLPLSETGKSKELDYIFETARLNGYRNSTIQAVVDKRARDKYRKSMTTLTAEKEDLKRVAVNFDTKITQP
LAKKFRKYGVDLVFSSRSSQLKSRLGSTKDKINKLNRAGVYKISCPHCNKIYIGQTKRTLEIRFKEHIAEVKKADKELEK
GLAYDFKSKVAEHVFQDGHQMTSDNIDIVRSVSSSWKLDVAESLEIYKQKPSLLLNRDQGNGQSRLFKFVPKKYKRA
>Penelope-10_XT_gag#LINE/Penelope 3-821 [Xenopus (Silurana) tropicalis]
MDMTYLGRNMERKMKREARLWWDVCSLENYIKCNRIPRGLRIKKFPSFSDVPRDFVTAWNLVLTDCSMKLMELILSYDRK
ELDIVQKEIADLHQNARPYVDAHDATLLDKITEQVKQYEFVVKNAKREKFLRDKRDYENDTVYMWNTHNYDTSFSQRYSG
RVNKRRGGLPHPILKSSKSVQFVEHDARPHGAQESRSVSPSSFLMSDPDLSGSDPDEGQESNIRSGKRGNVSTPKKEPPR
PYSYRSTRGEVDDAVGQQGYIKRSARNRRPPRW
>Perere-10_pol#LINE/Penelope 3-1232 (fragment) [Schistosoma mansoni]
LSLGPKFCDFKTVNKMDVEIQFENLYAQTAELVSSSKDNVESFKSTLVDCCFRYLNHGHSSKGILTNKHKEALRKLKTND
NLLITKPDKGYGIVLMDKNNYINKMKAFLNDQSKFQKLVVKNDLADKIEKQIIDSLKQIKQQGFISEKVFEMLKSIGTRT
PRLYGLPKIHKSGLPLRPVLDMNNSAYHTIAKWLMQILKPLHKEIVKHSVKDSFEFVNNIKNLSLKNKFMISLDVTSLFT
NIPLLETVDFICNELTERHTETVIPVTAIKQLILRCTMNVQFRFDNEYYRQLDGVAMGSPLGPILADIFLAKLENGPLKD
TISHLTSYCRYIDDTFIVLEKEHEKENILNIFNNIHPSITFTLEEEQNGSISFLDVQLTRRIDGTLKRGLHRKSTVGQYT
HFYRAVSIK
>Proto2-3_CS1_gag#LINE/Proto2 212-1327 [Capitella sp. 1]
MNDLKRSSVSSATNDSPMPPIVNNVLGFAMASVQMHAPNEVVKRILCQFSGETITDAKDILWEHAITHNYECIIGKKTNR
RDSNLRSEMEAHVDDIVQALLRISKRDVKPVIAVDACEIPSLPSLTGEDGDMRMRVSYLEDTCRELGRTVQQLSDVIQHR
LHRPEPTYCSQPSSVEPTYSQSLTLPKTISTDSTHDPLPDGESYTRNMSARHNEHAPSTCVPQQKSVIVPSAAPIDCDGF
TVPSHVLNKRRKQARRKRKIITGSNTGDQTLKGATQDANRDLFVYHVDKSATTEDLEHLMTSQKCEVRKVSVTSNDEARF
KSFKLTIPASCLKRVFSEEFPWPLNVRVRRFISRRPQDHVRRSQQQDQQHI
>Proto2-1_BF_pol#LINE/Proto2 1504-4332  [Branchiostoma floridae]
MEQISKLNVVSYNCRSVKNSLQTVKDLCVTADVILLQEHWLLPDDLSYLSNIDGNFLAHGTSPIDMSEGLIHGRPYGGVA
VLWRKSIGAFVNIDDLNDDRILALRINSDGKELLIICVYMPTESHNHTEIFMEKLGKIESFIDESGIPNVLIMGDFNTRP
DGTFAPLLYNFCLDGNLHISDIEMLPEDTFSYLSDAHRSTSWLDHCVCSDSVHQCISEMCVLYDFVSSDHFPLRATLDWS
TVPVFTNTADDVDSPASRFNWERASNDVLLQYHTCAENLLSEVMLPIEAIRCADPNCRDEHHRESLDSFSYEIINKLQEA
SKTSLPGRKRTVSHLIPGWNEVVKEYHSAARDAFTLWRENGRPRHGAIWELLRKTRAKFKYSLRQCRRFEAQHRANALAT
CLHKGDSRGFWSALRSQNGSKSSIPCTIDGHSGASDIANMWKNHYSALLNSVNSTAHKSHVNSTIQSGVSDNPGMSVTVD
EICDAINELSNGKACDANCISAEHLKYAGPRLHALLSLLFSAVLRHGYVPPRLLNTVLIPIVKKKNGNVTDKDNYRPIAV
SSPICKVLERLLLRRLDEFLHSPDNQFGFKKQHGTDLCVFALKEVIRYYQKRGSPVFVAFLDASKAFDRVNHWLLFKKMI
DRNVPLYLIRLLVAWYNVLTFRVRWGNVLSDNFTATNGVPQGSLISPFLFNVYVSDLSVELNCSGVGCYIGNVIVNHLLY
ADDICIICPSVKGLQKLMSLCERFGSENHIVFSKSKSQCVYFPCGRLKLHGPPPSVTLYGTELQYVTSVNYLGNQITSDL
SDDESIRYHVRGFYTKANSLIRKFRFASPGVKRVLFDAYCSSIYCAQLWCQYNLGTIRRLRVAYNNALRIVLGYRTRDSA
SQMFVTHGIDTFVARRRKLTHAFVQRIATSTNNIISRLYHSDAFFHSKFWTHYVNLVFKSPG
>Penelope-9_XT_gag#LINE/Penelope 47-947 [Xenopus (Silurana) tropicalis]
MASLWAIYMQFDELCFFHYFIFGETTVLERQEPTTRSSSGYTELPAPLIPTTHWLMEGSSSQLTFEVDTSTDFTFTPQDV
DKILFTETPLDLATNKPDIDIYHDLLNLKKKELDLQLHGIYLSNYHRQRLIPRGFRINNIPTIGRSNPEFCSKWCGILNH
CSFDLLLLVVEQVGKELVSIRADINTLELQHLESLRADTTSDWIHKLQTNIDKYKQDLTNFKQKKLHKVADDYKHKRVYG
WLLGLRPGDQGRRPIRRKRLPRSLTTVDSSDQSTDSDTVNTDNPGNRPFLGVTTRSRKEGG
>Penelope4_XT_pol#LINE/Penelope 426-2837  [Xenopus (silurana) tropicalis]
AATTTVFCPGTTPRTRSLISVPFFSDKPSPPIRGRPNKRRGGRQHPFRKKFTATEQVVFNLSTHTLSESELSLLSKGLSF
VPTSKSYTLDTMIDIHRFQRSMKLRDHFRTSSPTNLTPFRAPSQFEPPNTPKSIAAFTRLLIDETSKHRLPTSTHPNLTN
SEREAITSLAQNPKITIRPADKGGSVVVQDYSDYRQEIMQQLADTTVYRKLDRDPGMTFKKVIENSLSLGLNGGFITTDV
FNFLTKEFPKCPIFYTLPKIHKNLNRPPGRPIVSACDSLLQPLSIFVDHYLQPIVQKMNTYIRDTGDLLVRLQELHPLPC
KLLLATMDVSSLYTVIPITEGISIVQKFLQDQPDRDRPPIEFLITLLNHCLTLNYFKFELSYYLQISGTSMGSNVAPSFA
NLFMSYFENAHIFPKYGTHIYRLFRYIDDLLILWSGTKDQFLTMVQELNDLLKFTAHIDPISVAFLDLTISLSGSTFSTT
TYRKSTDRNTLLHHSSCHPPHLLRSIPYSQMVRMVRNNSNRHLLHQQLDDLVQRFLQRGYPLHDLLHSKERALSLPRTHT
LDTNKVSPQKNHSDRLTFVTTFTPDKKFLTDSILYHWSVVEKDRSLPPVFRTPPRIAYKRGRSLRDLLVKTDPIHCYSSE
TPTTWLPSARPGCYKCPNCTTCSSLITGPLFNHPHTGSPIQIKYRLTCTSKFVIYFIKCPCGLMYIGKTITSFRDRMANH
RSAIRSALATGEANTPVAAHFLLKKHSLASLRSMLIDFVPPPVRGGNRDKLLLQTELKWMHRLNTISPNGLNEMVSYSSF
YLQ
>Neptune1_Ren_gag#LINE/Penelope 1-1632 [Reniera]
MLPNYNNHWQEARNRNTNRQPNQYHVPYNGPVFHRPLPPTNRRPPTNPSSYIPPHRRPTYNTAYQSRGNHRPDQQQKRLP
AHRRQPVPTHKEEEPFVKVFFQVLQCLHHLAILTLQQQGQPAFTFKRKVSELDGFIRPAMKTSAVDANIRSLNRTWLCKV
TQVLIDHYQTTLKEKLTTIRTKSLSSPAVDRIVSHALSWARRSYGKRLTQAVISKFYQTINETKTRVTISLPTEMDTTPA
PSRATTLPNQTPKRARSSPTPSPADIGKRSRREGTPLLFSLSDSSSPSTPSESSPRDPGSANLSSFCAFLDQQTTPRSPS
KSRHVSRPSPPRTRSQSVPNATILTTTKPVPITPSTTIISATKPYYHQTKDKSLWKLPALKKSTLIIGSSNLNRITKTSS
DTEIHSYPGAQIHHIQSILESYDHDPKPTTIILHVGLNNRDQIPKTSFNQAQKLIATANKTFPNSKILFTCIPISNKISK
KAQQNLSTLNNMMMESSINSATILPPYEEEFETVDNLHWSPETANSIYLFWIHQLQASSKSLN
>Penelope-3_NV_pol#LINE/Penelope 1-1101 [Nematostella vectensis]
GLAIMDETPRNIERAKKNICKVFADNGLKVTIDTNKKIFNSLDVTLDLNTGKFKPYSKPENTPLYVHSKSNHPPSIIRNI
PESINRRLSEISYDENTFNDAAPQYQEALRKSGYEYELKFQPTPQRTSTQRQSRNRQRDVVWFNPPYSKNVSTNIGREFL
KLADKCFPTDHKLRKIFNRNMLKVSYSCMPNVKHIIDGHNKTILTKNELQQTETEKKCNCRKKDKCPLNGECLTQEIVYQ
AIVKTEEKTETYIGLTANTFKTRLGNHKQSFRNVNRKNDTELSKYVCELKEKREDYFIDWKVLARAKAYSNKTKRCSLCT
TEKHLIITKPNMATLNRRNELVSTCRHRRKYILRFNDSRTGNVARA
>Penelope-9_HM_pol#LINE/Penelope 2-2051 via tfasty with Penelope-1_NV_pol, 5 frameshifts and 1 stopcodon  [Hydra magnipapillata]
LTEKVELXIKRMRWKALICEKNLNQETDYHFNFKTRKCPPQHPDLVNFENDLLKMIQNISFTNSQPFQKQLNNDICKIKS
SENVFVFADKSHNIYELEKSSYNKLFNENVTRTYKKSDNSQYNNINNAAKIIAKNLGIDDRMECLAMNTAFITIKDHKDD
FANNTKCRLINPSKPELGKVSKILLENINNKVRKATLVNQWHNTDDVINWFQSILEDKQNCTFIQFDIEEFYPSISKELL
QNSLNHAKQFTEISEKTLDIINHSRKSLLFTEHNSIWVKKLGDPNFDVTMGSYDGAEVCELVGLFILHTISKDYGLKTIG
LYRDDGLCCFHNINGPQSERIKKNIVNLFKEKFNLKITIKTNLKIVNFLDVTFNLSENTFQPYRKPGDHPLYINVNSNHP
PSIIKSIPTMISNRISNISSSKEVFDRATPFYNNALKASGFKEKINFTPNIQKYKNRKSRSRNIIWFNPPFSQNVKTNVA
KTFLNLIEKRFPKTHKFHKIFNRNNLKVSYSCLPNINNIITSHNKKILSNVSHENANQTCNCRQTTLCPLKGKCLTKNII
YSAMxKHHQEEEGYYYIGLTENTFKDRWYKHKNSFQYESKANSTELSKYIWELKNKGIFKSFFTWKIIDRAEPFKPGGKL
CNLCLTEKYHIITSPLKLLNKRNELISKCRHENKFVIYNFNVI
>Penelope-7_XT_pol#LINE/Penelope 225-2101 via tfasty with Bridge1_TN_pol, 1 frameshift. [Xenopus (Silurana) tropicalis]
VLAKGLNFAIAPKTIPVVDIIAATEASIHNNKVSQNEAEQLCLKVSAALASAKPPPSNLTSQERKALTSLKKDSKITILP
ADKGRCTVVLNTSDYHAKVTTLLSDNNMYGALRRDPTNSYKKKATYLLKQLQEDEAIDWAMYHRLYPGETPPCIYGLPKI
HKEGAPLRPIISRINSVTYNVAKYLANILAPLVGNTEHHIQNSQDFTNKIQGLVLGTEETMVSYDVTSLFTCIPITEAVE
TVRKQLLKDNTLGNRTKLNPEQVCSLLDLCLSTTYFKYKDKFYRQKHGCAMGSPVSPIVANLYMEEVERKALDSFKGITP
SHWFRYVDDTWVKIHTQEVQTFTEHINTVDHNIKFTREDVQDNTLAFLDCLVRVREGGKLEIEVYRKPTHTDQYLLFDSH
HPLDHKLGVIRTLHHRADKIPTSTEAKVKELEHLRGALKTCGYPDWAFVKTSRKRSNNTKTTGEGGKHDRRKNLVLPYVA
GVSEKLRRIFNKHRIPVCFKPSNTLRQQLVHPKDPIPKHKKSNIVYAVQCSEECSDLYVGETKQQLHQRMAQHRRASSSG
QDSAVYLHLKEKGHTFEDCQVQILDRENDWFKRGVKEAIYVKTEKPSLNRGGGLRHLLSATYNAVL
>CR1-7_NVi_gag#LINE/L2 305-1297 [Nasonia vitripennis]
MSSCKKQSKTYADIMANRQPIKSQRVPRIIVKSLKSENKDPKEFSKKVCNLLIEKKDIQTKQVKSINDSEIEIKSMNEKS
AKATIELLSRKLSNNYKTTIEKIESPKMKIVGVDNYNKMNLEDLEKDLNNRNFNEYDEKCKVLHINKNNSTKTSSIIIEV
PRIIYKHIKDNQNRIFIGYQSCKVWDLINIKPCYNCGRFGHNPQKCRNEPCCLKCAGEHLTMQCDNSSNSTCINCFFSNS
KYKTKFEVNHMANDTEKCAILKSKINRYIDMTDYPMRPTIPKYLGKVEIHKEIHKETTTVIKSPSKLLKNSQLSTSAPIL
PLRTKTQRDK
>L1_Ele3_pol#LINE/L1 1201-4038  [Aedes aegypti]
MALTSYNIASINIGTITNPTKLAALRTFINSQSLDIVCLQEVENDQLSLPGFVVYTNVDHTRRGTAVALKEHIQVSHVEK
SLDSRLIALRVHDTTICNLYAPSGSAQRAAREDFFNGTLAYYLRHPTQHVILAGDFNCVLRACDSSSPNTSPALKTAVQQ
LQLHDVWEKLRPRDAGFTYVCRNAQSRLDRIYVSSGLREHLRTAHTHVCSFTDHKALTLRLCLPQLGHEPGRGFWSLRPH
LLTDENVAEFQTQWQYWTRQRRNYGSWIEWWISYAKPRIKTFFKRKSRIVFDEFHDAHQRLYAELRLAYDGYYQHPEMLP
TINRLKGEMLALQRNFSHMFMRMNETHVAGEPVSIFQLGERRRRRTVITQLRTEENETVAEPAAIEANLLNFFSRLYTEE
ATAENNNDDGFTCERVIPPDDPLNQACTDEITTAEILSAIRXSAPRRSPGNDGIPREFYLRXFDVIHRELNLLLNEALAG
NLPPAFVEGIIVLVKKKGGDNTARSYRPISLLNSDYKLLSRILKSRLECVMRAHHVLSDGQKCSNSERNIFQATLALKDR
IASLRHHRRAGKLISFDLENAFDRVRHSFLFGTMCSLGFSRDLVALLARIASRSTSRLLINGRLSRPFEIQRSVRQGDPL
SMHLFVLYLHPLVCRLEQACGNDLLVAYADDISVIVTSAGQIELMNGIFIRFEAVAGARLNLRKTVAIDVGFCEGNPINT
QWLQTADVVKILGITFANSIRLMTTLNWNALVGKFAQQMWLHSLRMLTLHQKVIMLNTFGTSKLWYVSSVLPPLGVHTAK
ITSTMGAFLWRGMPARVPMMQLARSKEHGGLNLHLPALKAKSLAINRHLKEIDSLPYYKSLLFHDNPRPAISIDHPDLKI
ILSNYSHIPPLIQENPSADLIHRHFVSQTDLPKVERSHPTIDWPRAWRNISDKQLSSAERRSSTCW
>L1_AC_19_gag#LINE/L1 328-1161  [Anolis carolinensis]
MASENLNSTDSKLDKLMEMVQGLQNSMELLSTEVTNTKEQMQLILQLQTGFEAKIKALQNDVHFLNQKVVDLENRQQCRN
LLFFGIPEYISDNDLITSLSEWWTELQVPATGGDIDRAHRIPSYVKKDKNNKKQRLRAVIIAFARESICLKVYKFLRKVP
DLKYNGNTVSVFQDLAKSTRDERASLKAITDRLRTEKINYTWAFPATIVVYKGGEKITARTPQEGNKMLKELKLTCPSPK
SLSADTDPDEGTGTTTEEEEEGAEAHTRPDHLKKKEGS
>L1_Ele4_gag#LINE/L1 168-1406  [Aedes aegypti]
MAQVKPRENTFRVDLTNFPKRPSFEDLHLFVHNVLGLKLEQVVRLQMNHVQNCVHVKCATLKIAQDTVDLHNGKHEITIN
KTKVKVRLVMEDGGVEVKIHDLSENIRNDDIVAYLKQYGEVITLQEQMWGDIYTFKSRPSGVRVAKMILRRHIKSFVTIQ
GEQTLVTYRGQPQTCKHCMNAIHTGISCVENKKLIGQKTDLNARLNSDRQRTQGYAGVLSSPPPDQEALSMNFVDLNEHN
RKAAAVSNTSTSTQSKEEIVVEMASDANEPQSSAGPASSDAASAEQHTENVDQPNDVELNKALTGASWAQLVNAESPNDV
QMQLSDRPNGQSRDSSLLDEARGGSTKIVPTQVRTDISPTSVFKKPQDDNCGGSDYSMEISDNEGNAYQCSSEKEFTTVR
KGRDRSKKQRVGK
>L1_Ele19_gag#LINE/L1 158-1285  [Aedes aegypti]
MNSSRRRENTFRIEFSNLPKKPSFENIHRFIAEALGLSKTQVVRVQINHYLWCAFVKCVDLATAQSIVQQHDNRHEIDIS
GKKYKLRILMEDGAVEVRLHDLSEDVSDESIMDYMSQYGQVLAIEELAWSDKYAFDEIPSGIRLVKMILKNPIKSYITVE
GETTYVTYFGQKHTCRHCHEYIHSGIPCTQNKKLLVQKASVNERLNTNTRANPKTGSYANAVKTNAGPTFVLPSTSTSPP
APSPPTPSPPTTSPAPPLSLLQPAQADVADGAPAIDMECSSVQAASGSGPSLGSEMTTSPEQSFPSASSEVVIDDGPFKM
PHVSNTSTDMNLDDEISDSSLASAGSTSRWTRSKKYKFDNIQPKKASHDRRSTKQP
>L1_Ele16_pol#LINE/L1 1204-4386  [Aedes aegypti]
MDFLSYNIATVNINTITNATKLESLRTFIRTLELDIVFLQEVENENLQIPGFNVICNVDNMRRGTAIALRDYIHYTHVEK
SLDGRLITARVNNVTLCCVYAHSGSQMRNDRERFFNDTLSYYLRHNTPHVILAGDFNCILRQCDGTSTNSSPSLQATVTQ
LQLCDVWVKLKSRLPGHTYITHHSASRLDRIYVSSDLVSHLRTVDTHCCAFSDHKAVSARICLPSLGRAPGRGFWTLRAH
LLTAENIDEFQVRWQYWTRQRRNYRSWXQWWLFYAKPKIKSFYRWKSKSVYDAFHLEHQRLYAQLQQAYEGLQGNRCMLM
DINRIKGKLLTLQRNFTQTFVRSNENFLPGETFSSFHLGERRRKKTTIARLSDDQGNVIEGQEEIENHVVAYFQTLYTAE
QTDVLAEEEFVSDQAIPNDDAANDAIMNEINTAEIFAAIKTSAANKSPGPDGIPREFYLRSFEVIHREMNLVLNEALAGD
FPTEFVDGVIVLVKKKGAGTDMHSYRPISLLNVDYKILSRILKLRLETVLRVHRVLNDSQKCGNSDKNIFQATLAIKDRI
AHLIRRKQPGKLISFDLEQAFDRVSRRFLSRTMTSLGLNRQMITLLNAIAERSSSRILINGRLSQTFPIQRSVRQGDPLS
MCLFVIYLHPLLRQLELVCDTDLIVAYADDITVIVTSTQKIERMRSLFLCFERAAGAKLNMMKTTSIDVGFIDQGTLVVP
WLNTEVKIKILGVIFANSIRVMIKLNWDAVINNFARLTWLHSLRCLNLNQKVLVLNTFITSKIWYLASILPPYSVHTAKI
TATMGTFLWSRVPARVPMQQLARNREEGGLKLQLPAIKCKALLVNRHLQELNCMPFYKSFIDGNNTTPVTIPADLQCLRL
LHHQLGYIPQNIQQNPCAGSILQFYLQATEPPKVEKNNPRHDWKRIWRNINDSKFSTKTRSELFMIVNEKIETRRLMNIL
GRTDGENCVHCGARVETVIHKYSECQRVTEAWALVQRRISTIAGGWRRFSFVDLLRPTLIGINRNNRIKILNLFSLYITF
INLCNDVVDIDVLEFDIQCGI
>L1_AC_8_gag#LINE/L1 1233-2294  [Anolis carolinensis]
MAVPKFKQDKDLKDTKGTARRPSQTEDLALKDILKEIQKLSDKQDQNAEEQKRFQREMHQEMLEMKKEIKEDIALIKNEI
KATHEEIIDLKKAREKMEKSQIKFQKSVDEFQKKSMKLEKTQELMEQKEMEFQLRFRNLEEETNENIRQKIIQITAKILQ
RSEQEMGSELDRTYRIQTNFSKRNKVARDVIVNFVKKRTRDEILMMNSRKPTFYKEKKVIILKEFPIATLNRRRNYFFLT
EELKKRKIRFRWEKLEGIMVTFKNEKHWLTSIDKAKDFYKELMKGNYEDSLELSLPQRKKKRYHSPQTGDATTVTNTMEG
LAEMNLLDLDSDEKGEESGEEEPITSLTEPKKLI
>L1-92_Cis_pol#LINE/L1 1189-4986  [Ciona savignyi]
MQLRISTLNVAGIRNQLKRKTILHFLKSKQSEIILLQETHSTVETEKLWELEWGGKIVWSHGTANARGVAVLFTKNTHIQ
INNTITDTTGRYIIAECSINSYNIAVGCLYGPNADDPRFFEELSLELNNLNCDNLILGGDFNVILDDTLDKMGGAPQHGN
KQARKELLRLIEHHSLADIFRIKHPRTKKFSRIQKRPFVGTRLDYFLISKKLTHKSDQCEISPSVKTDHSLVSVRISISN
KEHGPGYWKFNNSLLEHEKFKLETKANIINFLEINSNGQVNALVLWEALKCVLRGQIIKFAAQESRRRKDKQDSIVSKIT
KLETTLITQTTQSSQRETTVEELESAKLDLDTLREEKTKGAILRSKVNWAENGEKNTRYFLRLEKRRAEKLNISSLKING
KIETDERTILDELGQHFQSLYEEKQVNRTQQQTKMRSFFSGITVPQITPAELYECEKDLSESELYQSLKNMNTNKSPGLD
GFSASFYKCFWEQLKDAFLAAVNYMLSINGPSDIFAKGAVILLPKKNKDHLYAENYRPITLLNVDYKIISKAINNRIKLL
LPKLIHNDQNGFVPERYIGDNTRTLFDIIDYADSTNTAGAVLSLDIYKAFDTLDWEFMLLAMKQFGFGTRMTGWIRCLYA
SSKGTVINNNFFSRSFKIARGVRQGDPLSPSLFVLSIECLANKIRANNNIPGIEIAKKQIKLCMLADDTLVFTDGSENSI
LNLHAELQNFEEISGLAINYEKSSAFYIGIKRLCSTKPLQNIGLKWPTEEITYLGIKVPINKNLPKFYEYNLKGLIEKVQ
SILGAWKSRNLSLLGKVTIIKSLVIPILSYKVVVAPIEIPTAFIKKLEKAVYSFLWGSNWERAKRNTLVADVEEGGVNMI
DIATYITALRLRWVRQLVDNDVVKNWKSIELEITPLPTVIAALCGNTSMQTKLSKKIFPLHTVRCSVIAWRECFKHDTAD
DSTISNFPLWFNKQVKFKNTPIFMQSFVKAGVFNLDQILEHTSGEYDQYDNVAGKYEMIANNVDFMNFSKIIAAVPKQWD
ETPFENLPKTTENYLEXLIEQTKERCATNRHAYRFLIKFKKQPPRKKQLTWAKDLVEPPDCVDDWKTIYLNQYNCTMLTS
LRSFQIKLNLRAIVCNVALHGFGLVDTPLCVFCKEVPETLIHVFCDCRFVTNFWEEVTAWLSAKLRLSLNFNKKQMLFGI
TNSGNDPLLNCVLLCARFCIYVSKVKQIRPRLIFFIKRLFEIQKCEKMCQNQNATKFYLKWNALTN
>L1-49_XT_gag#LINE/L1 138-1255 via tfasty with L1-13_DR_gag, 1 frameshift. [Xenopus (silurana) tropicalis]
MGKKTVKPREQRVTMSPFLHKALTQDTHLSQDGGDPDTCAPDLPSSIDLPPQTVSPASSPLSTPMPQSPPHSPLSSGLPE
QPVTVQILSEQLSQLHNALTATISQTVSSAVNSAVKELQRDITDLGNRTDKLETYTDDIAQRITYIEEENFSLKEEVTHL
RDMCEDLENRSRRSNLRFRGIPEEVPASDIANYLKNLCAHICPDIPAEPMDRAHRSLGPKPLATKPPRDIIACFHYYQSK
EAVLANTRTTNTIEFRNHKIQIFADLSPITLAKRRELKPITSKLRESGIPYRWGYPFKLIVNRYGQTYSLQNPSNGNKFL
QALGLNLKGPIRPAHSPPLRPGNTNTLGQQWHTVQKQRSPPRLALSPSPPRIT
>L1-94_Cis_pol#LINE/L1 1215-4979  [Ciona savignyi]
MASRLQIASFNVAGIRNKKKRRAIFHYLKGKKYNMILLQETHCTKECEKQWKMEWGGEIIFANGTNRSAGVALLVPKSQK
VNINDTTLDPEGRTLLANVTLNNITFTGVCIYAPNKFEAKFWKTLTNNLNKYKNTDIIAAGDFNTIISDELDKVGGSALH
HNSQARRHLSEIMCHFQLLDIFRILHPDKKQFTRLSKSPVVGSRIDFILLSQSLSGRTISASIVPSVHSDHQIVTAEIQT
DERDRGRGYWKFNNMLLHDENFVNLIKDKISDFKLHNENCGVSPGTLWNTLKAVLRGHCIQYSAIKKRKNRKKQQQLENA
LSLTSSEIANANTSEAVTLAATLRATQMQLDELADLNSKGAMVRSRARWAEQGEKNTKYFLGLEKTNTSKKVIRCLNTEQ
ESISEPSRILESLHNFFRDLYAPTTDNITKVDFDKFLKVLRIPKIASDKKEQCENEITETECYTALRDMKNNKSPGLDGY
TAEFYKTFWKDIKDIFMKTVRWSFAQAKLPDSSNTGVITLILKPGKEAASTDSYRPITLLNVDYKLLSSVINLRLKKLVP
DVIGPTQNGFIKNRQIANSIRLLFDIMDYADTARVPGALLALDLKKAFDSVRWEYLFTTLEHFGIGPNLIHMIKTLYNQA
NGVIINNNNLSNPFPIKRGVRQGDPLSPTLFLFAIETLGLAIQQCQNLQGISIGSLRFKVSMYADDSLIITNGSREDIXT
SMNILDLYGHLSGCKLNTNKSCAFYIGTKKGCILKPLEGKTLTWPSDTLKYLGVVIPISGKKQSIFNLNFDTCIDNINRI
LNIWSSRGLTLLGRVTVIKSLVIPTLLYRISMVPTDIPEPFVRRLNKELFRFIWGSGWERAKRSILINNIAEGGTNMIDI
RSYITGLRCKFIKQFMNPDYSAPWKDIETYLTSQDTLNIILSSNLALHNKIYKTLLPLRTLHSNVMSWMKMIRRKGQMTT
NDQPLWLNKNIQVKRKPVLFTNWAKSGICVFGDILSETGQIHSFETLMQRYHLSETESEKMRYAQIISALPVNWRESSLP
PGDAPETSRQWFETKSTSKDFYNAALEHVVTKPRKYQLQWELECNFKDVDGSFWSNIYINTYKSTIETRLRSFQIKLNLR
AIVTNSQLYKLKIIDSDKCEMCLTEPETLTHLFCTCIHTVKFWNETENWIAANLRIPLSLSHTNMIFGAPENNSNLLNCL
ILCARYIIYRSKIQKISPFVNAFIDFVANVKLSEKMAAISNNTLWKHNSKWSGLM
>L1-99_Cis_gag#LINE/L1 1964-3331 [Ciona savignyi]
MSDKAKMHQAAPRGNMPIRSYARAARAREHTKQLERPNCLSIKGKIRLDRPKTLEIIKKLKFQKKIFGIAEMQGGIIDIT
CTSREAVLKLHEILEKQEEVQSVRLYQTDKIGIALGWVPIPMENGVIQEALKEFGCVHKIIRKTDKDGMVTGMRIVIMNK
QDIKDNPIPSYIIIQGYEVYVTYTGQEKTCRFCSETGHVRLDCPHWRDEFPVMGEAREKSAQSGPTSREVTPRDVTTPTH
VASSSSLAAESLLPKYDEGILEANSNKKTTATSGNKRPLSSPEEVSHSKIKSISLSDNKISVWCKTCNKEGLVAEESTKY
LCWGCKNEFNVIKTCCTLDEFFLVSSADKSAVCPACREGMRLMPCCTTYQPTMHIADGTLQCPNCERYCADCNCGRFNYF
LNKELSKPCENLKCKHRYIHCNCDKKYVTEISPEQPFKCKCGFEYDYNVKNGVKTT
>L1-96_Cis_gag#LINE/L1 1-1056  [Ciona savignyi]
GWTPIILPNETIAEYLKEHHGKVLKVLTRLDKQGMQTGQRIAIMNKDDLDKNPIPSYIVIEGHEMYVSYKGQSPTCKHCK
EAGHKFASCPKRNAATEFPALPVAGAHTPQTATHETVKEKRNHDIIEKQKTPEAQKPTDVTHTTQRTKNQTNEKESEMEI
APDSLERIKGTKRERESTSPPQQVAKSMSLSENTCTVQCPGCKVEAWVLASGSKFHCWKCKTDYEVVTPCCEEDSRFLVA
EKSTSTCCSICSTKMRKLPCCETFTTEIDLEGNLFECANCDGTISLKCNCQTINPLPPRSTTKACINEKCDHKIILCECG
KCSAVPIHTSEPYRCSCNTDYCATSDLNVFKQ
>L1_Ele21_gag#LINE/L1 127-1242  [Aedes aegypti]
MASSPYHLTSNGPRVNTLVIDLANLPAKKINMEMIAKFIHDKLRIQFSSIQSLQHNTGKSLVFIECQTEELAIAVTERND
GNYEISVDNVKYKVNVFMEDGATTVRVHDISPQTENSSIEKELERYGDIVWLKEEMWTEPAVLKGIPNGVRSVRIRLHTA
IPSYININGEVTLVTYKHQQQTCRHCGKPVHWGRKCIEAGYMEMQLNGGNISDRLRASGVDYAGVLKTSNQTGTSQEIRN
SVSSEAEKNRVDPNYTNLTQLFNKSSSQGQDRKKITTNTVESNEKLAIKSTNTNTNSKFQAPSENTESSAAKTATSKLAR
GSMAVNPIASGIEVSNNFDGLDISDDDMDGTHASGCKSPSRKKIGLSVDSSE
>LINE1-8_SBi_pol#LINE/L1 2968-6510  [Sorghum bicolor]
MAQNNCLLLNWNVRGLNNNARKDAVNELVRDSNATIICLQETKLQAIDQAXVLRTLGANFANSYAVSPADNTRGGILLAV
NENFFDLTNVLLSPHAITATIXMRADGVQWQITTVYGPQGDDQKLQFLQELQSIQPPSHGRWLVLGDFNLIYQAQDKNNT
NLNRRLMGSFKSALDNMNLKEIRLNGRRFTWTNEQDNPTMSRIDRVFCTPDWEILFPACFLHSLPSLMSDHTPLLLHGEM
EHKKEPSFRFENFWTAMDGFQETVQEAWDKPISSSNHLKRLHIKLSRVAKALKKWRKEKVGDTKLQLALAKEILLQLEVA
QESRALSPEELDLRRRLKIRSTGLAAIEKARIRQRSRLTYIRTGDANTKFFHMRASARRRKNYIHCLHTNDGMAFAHDSK
EKIVADYFSNHIGSTAPRQLTLAWQALGYAPQDLSELELPFSNDELKKVIDSMPIDKAPGPDGFTGKFYKSCWGIIKEDI
LLALNSLYMMNAQGLQLLNTANIVLLPKKGDATEITDYRPISLIHSVAKIFTKLLANRLAPRLDAXISNCQSAFIKKRSI
HDNFMYVQNTVRTLQKLKMPALFLKLDIQKAFDTVNWSYLLEIMQALGFGPRWREWISILFRTSTSTPLLNGQRCPDFGH
RRGVRQGDPLSPMLFILAMDPLQRLLZLATAQGILSALPASTAKWRISMYADDAAIFTNPIKSDLDAIKMILHIFGSASG
LHINIHKSSIHPIRCQDLDLDQVLADFQGARGTFPCRYLGLQLHIRKLQKVHIQPLIERIGQRLPSWKGKWLNRAGRLTL
ITSVLSAMPTYHLTVFPLATWARKKIDRIRRSFLWKGEENANGGHCLVNWPTVARPKDLGGLGVPDLDKFGRALRLRWLW
LQWTDSSRPWTGTDVPCSREDRLLFQASTLITIGDGNKARFWTDAWLDGEAPMNLAPSLFLMVARKGRSVRQELQNSNWV
SRLXSRINTAEQVEEFISLWLRIQTVQLQZGVNDTITWRWTADGSYTTRSAYRIQFKGAYSTFNSNLIWKADTENKCKVF
MWILIKEKILTADNLQKRRWPCHEHCVLCNGPLETPVHLSFNCAFAKAVWNQVFIWEGINTDLLQMQDEPNHFRTWWEQV
VPQISKDQRRKFNGMVIYTCWNLWKERNRRIFNNVFQSXXEVAARIKEDIDQRRRALRTFG
>L1ME_gag#LINE/L1 L1ME_5end 601-1593 [Eutheria]
MSRIQSKITRHTKNQENXTNSQGKRQSTXANPEMTQMLELSDKDFKAAIITMLXEVKXNXLEMNGKIEXLSREIETIKKN
QMEILELKNTISEXKNSLDGLNSRMEMTEERVSELEDRSIEIIQSEEQREKKLKKNEQSLRDLWDNIKRSNXRXIGVPEG
EEKEXXAEKIFEEIMAENFPNLVKDINLQIQEAQRTPNRINXKKTTPRHIIIKLLKTKDKEKILKAAREKRHITYRGTTI
RMXADFSSEXMEARRQWNNIFKVLKEKNCQPRILYPAKISFRNEGEIKTFSDKXKLREFVASRPALXEMLKEVLQAEGK
>LINE1-11_SBi_gag#LINE/L1 272-3007 via tfasty with LINE-7_OS_gag, 2 frameshifts and 1 stopcodon. [Sorghum bicolor]
QNRLLSDLHDCIVPNLISPATAPAPLWVTPPSLHPRFNEFFITNSLCHMLAPRPSRLNVKRVRDAVFVVTVSSEKFAVAL
ALIGSLRIADVHLFFHPSLESAIRAASRLPPLGAAAGQHVQKGSPAVKAAWWLPNNRLHCDEHSSPPAPEAIRLGSVPAD
LLSVPPGSFLSLPGSGGAARRLVAPAVAALDVPLSPDFNVPQRPKSYVEAARSPPAPTRQVFKTLKPLAPSRACYRCLAT
DHLVDDCREPVRCRRCRASGHRSNQCKMKLCVLLRAAAKRMRAPTPPKDxRGRLATPSPDPQGSPRAARGRAPVGLPPPP
ILGGLPPDQHGGLLLLGPPPPVEVLSTQSLRPLSLRTPEHPCVDKFVLPAPCSPCLQPTGAARQASPAGPTIMPAPVPAA
SDAVEPGVGGVESSAEEYASGELELDSVSSASGSSWHEGRPRHADAWVSPGRDELSERLLFAFIEPPVPALEVSAFIRNA
LRTVAPLQPVDLLQSSMGAMILRCESPEARDSLRLLGPISLGGSLLHLLKPEDTANRFFRVPVWLAFVYVDWFPIEHWYA
EKIKECFSSFAEVAEIDPECLSGDNFGPLRLLLEVNDRLEIPRELRISCKQGVGRSGAVARITPIRVWPREFQLDSRGNL
APFFGPPAPPSSGPSLGPSGPLTSAQQLRPQSHYYSLAFPTGNAGRFASNLQRPFDPLGTSAPSGSXLPLLLPHQALALA
FSLARVLNAPSATASSGPGAPPASALSGAVPGXAIRDVRAGEATPCFACSAVRLGPRRGKAGDHLPTPPLSLQAERPGCT
CAAQSQGGRKPSVANSAVRRSSSRLAAKAAGASGKFVDTATQAIQRKELLNSLSTCSVSLKKHVTKRNILSRNLLPMSAA
ELRALVAAAKLGSRSSGDVVDGGNDMVAEAAE
>LINE1-40_ZM_gag#LINE/L1 463-3243 [Zea mays]
MEFGPEDDKVDDDLDFTFSRVRMMAKPKTDIGHSCKDAQHGLAISKMEVGSTTRDGRLEVGKEKQGCLGLSLAQVFRHSW
RPINPKWLWVPRSNILSGKGYQARPEEVRRLGQRARRIKRVETPTPFVRSFSQVVKEGRMAWRRESGGNSWKRPPKDWME
EDDLLDSEFSREEDLRSKLQRAPGEHTEQDQQDMGHHRQGSFTGNKIPRRGGFWRGRGNFVPARGGFGGFRSVDRNETGG
RGSKNQENRDREQGSQPCSERGRPSGFGVGMQQGRDSKIQEGLVKEIRCFRCSQSGHHQADCPNDPLCYKCKESGHMAAE
CQNNKKLRLFGFGIPEQGFFGFDIPEKKVQVNMLNAVIHILEGEPTEEKLDRELKNLVQANWDFRVRRMDKHDFSASFPD
KSSLESYAKLSSLELPLYSYRVQVTKANSDLMASSVLQCVWIKIYNLPDIAREEGIIREVASLVGKPVVVDELSIIKEGP
VRVKVDCRDPSRIKGFIEVFFNKVGYELKXVAEGVRTRSPYLSGTSGSGKQDDKDQDKDRNRPGRNDEKKGGKFERKGKE
LEKNQDSSFGESQEDMEEDAGVEGTLQEIYDEIPIAAFHPTKGFFSSDLKKVEDHTDTVNSSEVLMLNKEIEQKIISDSQ
LSDVLDNEGSVDDRAKVAPEKSQIEMMKQRVDDQTFCSNKEINTITNSRVNRNSIGLDGMNHFGGRINLQLANQEKRDQD
LKLMLDDFPTEDNEEDWHGNIMEQVELYHTEEDGEQEWEKALSKKGKKKSRRNFPVIATRASSRIARDGIPILEKATKRA
REKNQLQGTSRPNPFLILNNESNENLSTVMKDIGIVLENYDNQIDLFKAEERVRATIAEANYNKYVDKINSKNAPQTEED
LQELAMEAITNKERLEAPLISQEGPGGAEPEKNKKKGRPGKQSKKG
>LINE1-17_SBi_p2#LINE/L1 2049-3845  [Sorghum bicolor]
MFRALVRTCSTKDSNRVRKKISRDKSFRTPPELVQHGQILLAPLQHNPIINPANSWMGWPNAPAQLQAQAAQIVNGLEGG
PDLNLQEQINLNDPSLDPFEVIITPSLSAQPNDFLNLNEVRGLMEEYIPQPVVNPAILEQQQDHNNVMGFPLPPLVDVLG
EEVPLDQLLNGNEEEEEDQQTHASPVQAVPNTNEPDQAVGFDGTEQVISDPSAQGGALPELVRELMSQQPQQLSETCMLN
QAQDSVPDQFQAQLQNYDGTVSDQLFLAQQNLSPHSRAHNTVTGLAQNGVNLSPGKNAEQEGLATLESLAQLNSAPVEPV
GSKPIDTAPEKDSPDLLCKEDISIALPENLDSLEQSQEPNTQIRQEMEQFKESVTMMQQEMSRAADSNKLWSRFFCHNSP
GNLTVQIPANWANFFTVLLLSPTHFSWARDIVTSELMNLLHNPTGSTPFSIPDTCPNYVPTHCLTDTGVHQPIPRLVEEV
QDXEKEPKSSSKKRTSKEPLLSDKEVRRSERVKNKANGFKSPSCSDKRCLSCSPAPPTLSVKLMQTLGSKLGGLSEEELQ
EDNLNKKKLKTLTVERKKKTVKGKGVAEEGPTKAMEIED
>L1ME3_gag#LINE/L1 L1MEc_5end_805-1805 via tfasty with L1MD1_gag, 7 frameshifts and 6 stopcodons. (not too pretty) [Eutheria]
MSGIQXKITRHAKKQENIITHNEEKNQSIETDPELTQNCXNXNYRQGXIKTVIITVFYMFKKLSRDMEDIKKTQIKLLER
LKTTMSEMKNTLDGINSRLXXIAEEKISELEDIAIETIQNETQREKKIXKIKNEKSISELWDNFKXPNIYVIGVPKGEEK
RGKREKIFEEIMAKNFPNLMKTINPQIQEAQQTPSTRNMKKTTPRHIIIKLLKTSDKEKNLKSSQREKRHITYRGTKIRM
TADFLSETMQARRQWSNIFKVLKEKKTXYLLSLPRILXXRKNCQPRILYPAKISFKNKGEIKTFSDIQKLKEFITSRSAX
LQKMLKEVLQAEGK
>L1_Lme#LINE/L1 1-2353 via tfasty with L1-8_DR_pol, 1 frameshift and 1 stopcodon. [Latimeria menadoensis]
EVVTAIRNINNGKSPGEDGFPIEFYKTYMEHIAPLLLEVYQEIQEKGRLPESMNKAIITLIPKQGKDPLECGSYRPISLL
NVDYKILAKILAKRLEKIIPTLIHPDQTGFVAGRYSADNLRRLLHVIWEVRDEEEPAAALSLDAEKAFDRVEWDYLFxIL
QHLEFGDNFRKYVEMLYSRPTASVITNGTTSEPFPLGRGTRQGCPLSPLLFILALEPLASKIRANPQVQGIQVGEQEHKI
TLYADDILLFISNPQDSIPTLLDIIAQFATISGYKINWSKSEVLPLTGSCNSTMFEDWGFKWKAQGLKYLGILINTGLEN
MVEDNISAFLARFRLDLQRWGKLQLSLWGRVNLLKMISAPQLNYILSMLPLSIPTSSFKIIDGLISAFIWAGKRPLMAKK
KLQAEVQQGGLKVPNFELYHIAQEISYLFRIAGTEGRDVLPSVQIERDKTQMKVAQWYAGLKVSGYRDPNPVIRHARLCW
HKAHTICGQSTHLNANSYLWENPAILVQGKPIRWTAWVTRGICNIGDIWGPEGVLSFPILRETFGLSSAEFLHYLQLKHS
LDRREALTPGMLQTSSINELQRTIAGKRGAVSRIYSFLLNKNPPKRDNIRKAWESELGLTLTDDVWEEALASALTAGIDI
KSRLIQFKIINRIYWTPAKLLTARLPNTDKCWRCSSEKGTLLHMLWECPKLKCYWTQIRTFLESLVEIDTMDNPQACILG
EVSSFLKSALVTAKRVILRHWRQADSPTFQEWFLTMADTAAHERVILKVRNRLDLFEKVWSGFL
>L1_Ele28_gag#LINE/L1 151-1494  [Aedes aegypti]
MSSPKSRENTFRVDFSNLPKRMSYEETHNFVHNTLGLSLDAVVRLQVNHALNCAQVKCRDLKTAQETVIKHNAKHDVEIN
STKYKVKLIMDDGGIEVKIHDLSENVTSEQICEFLKHYGDVIAVKELMWGDNFIYKGVSTGVRVAKMVLRKHIKSYVVVQ
GEQTLISYSGQPATCKHCANLVHPGMTCVQNKKLITQKTDLTARLTRAREERSSYADIAGSSPILMPAQNNTGFRSAEAL
MPEFVKLGGMRKDQEATNTAKENSKLSVHSNIEGEVAGASTSFSTAAAAAGVEAAADAAEGDADVEEAVGGQLFSQSEEL
RTEIIIPMNVDLVEADHDTEVDSSTVSGNTENAETLSQPQILNVYSQKRVPILATDTTKVSKTSVHQSSEKHFKVPAGIC
DGAMEVSESELEMRAHKEFEFSSDASCHDDGFVVKRSRHRSKKARTTH
>L1_Mdo4_gag#LINE/L1 745-1875 [Monodelphis]
MRGARAQPNTGSKEGVNSSKQQKKKKEITIDSFCTGNEQRANETEGEDPAKEKSEIPANWIQALEELKMQFKTQLREAED
NWEKNLKTKISHLETENSVLKAKINQLENEAKEMKDEAKQMKDEVKKMKDDLQRKSDQKEKDDQKTKDEIQSLRTRIQQL
ESSDLTRQQDTIKQNQKNEKIEENMKHLIHKTEDLENRSRRDNLRIIGLPEDHDKRKSLDIILQEIIKENCPEILEQEGK
VEIDRIHRSPPVLNPQLTTPRNVIAKFKNYQTKEKILQAAKKKSFRYQGTTVRITQDLAASTLKKRKAWNTIFRKARELG
LQPRINYPAKLTIFLQGKVWSFNKIEEFQEFVKKRPDLNRKFDVQAQNSRESSKGN
>L1MC4_gag#LINE/L1 L1MC4_5end_730-1740 via tfasty with L1MC1_gag, 1 stopcodon.  [Eutheria]
MNKNRXNPYKAITKKKHQKMRIKTFQLMKIPPQKKXKNNHEAEENCXTTLQTELNXLKQAFXDIKKNYLESEIQKLRTEM
DKKIKEEMKXELIELRKEXEEKDKIISEMKTKLQXAQGRIDSNENLIRGIEERQEKNNKRIKKMRXRKEVKRVREKVXEM
EDRQRRNNXYIIGVPEEEKQNNGTELIFKTIIQENFPEIKEKDLNLHIERAHWVPGKINPERSTPRHILVKLLDFKDKEK
ILKASRQKDQITYKXKRIRLASDFSKTTYKARQQWSSIFKKLKERKCEPRILYPAKLSFKYQGYRKTVXNMQELREXCTH
EPFLRNLLEDKLHPTKR
>L1_MM_pol#LINE/L1 2060-5902 [Mus mouse genus]
MPTLTTKIKGSNNYFSLISLNINGLNSPIKRHRLTDWLHKQDPTFCCLQETHLREKDRHYLRVKGWKTTFQANGLKKQAG
VAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYAPNARAATFIRDTLVKLKAYIAPHTIIVGDFNTPLSSK
DRSWKQKLNRDTVKLTEVMKQMDLTDIYRAFYPKTKGYTFFSAPHGTFSKIDHIIGHKTGLNRYKNIEIVPCILSDHHGL
RLIFNDNINNGKPTFTWKLNNTLFNDTLVKEGIKKEIKDFLEFNENEATTYPNLWDTMKAFLRGKLIALSASKKKRETAH
TSSLTTHLKALEKKEAHSPKRSRRQEIIKLRGEINQVETRRTIQRINQTRSWFFEKINKIDKPLARLTKGHRDKILINKI
RNEKGDITTDPEEIQNTIRSFYTRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGP
DGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQE
HIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAI
YSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEVKISLFADDMIVYISDPKN
STRELINLINSFGEVAGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLKKEIK
EDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVWNNKKPRIAKSLLKDKRTSGGITMP
DLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFNNWCWHNWLLSCRRMRIDPYL
SPCTKVKSKWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVNKTKRPP
TDWERIFTYPKSDRGLISNIYKELKKVDFRKSNNPIKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFH
LTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWECRLVQPLWKSVWRFLRKLDIVLPEDPAIPLLGIYPEDAPTGKKDTCS
TMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFLAKWMDLEGIILSEVTHSQRNSHNMYSLISG
Y
>L1-7_DR_gag#LINE/L1 178-1094 via tfasty with L1-1_DR_gag, 1 frameshift. [Danio]
MAAPGNKRGGKETRANTANVSSGDSRGTHEGEPLSAEMFKQSLESIKNDICIKIESAISGLQSDINGVKEELTSAVATIQ
QSLGSQEERLRAVEDSATATSNSLRYLETTVAKLQTEVTALSLKCEDLESRSRRNNIRLIGISEGEEGNRPTEFVSNFLR
DLLNMEEEALLDRAHRSLQPKPKPGQPPRPFIIRVHFFHIREQILQAARQEGRLTYKGNIWLSGYNLFPDLTANEAKKRA
AFGEVRKFIRNVEGARFGFRHPARFRITLPGNTEQLFTDPLKAMEYVKNTLAADAIGTKTSVMPE
>L1-7_CR_pol#LINE/L1 836-2443 [Chlamydomonas reinhardtii]
VARPPGLPSDCVALPPRDGGFGLLPVVEHVRARHAVLAVRWLQHMHGSAAGTYVPPWTAAATALAVQQLHTAAHPLCVLT
MQRAAGGVGPAADGCAIFGQPVAATCPALVRLLGALSYLPPVTILRPAVLVPGPWCFALPLWGNPVLPCAAGLQAGGLER
DFPALMALPGLLTLGTAVRCWEALAAVRQLVASKPAGALGPRLARRCTIQYKRSVLRPILRITDMARVPPELQSGPDAAA
QFSALLARVPAAWRVAASATLHAPGGAASAPPAPQVWLLLAQSLGWRHGAADVPLLTLTVKQATQLQLAPAYDALRVRHL
AFIQEAYSGAAPPAEAIHALRAALARLWALVWEPRHKEPLWRLAVNGFTGFGMLAAWAADGRVEKCPCGTQMTAGARVHH
FWDCVVAEALRDVMREHANVDITRNQLWLVQAPPGLSQAVWDIVCLAAVAALEYGRQRLYACRDAADRTAEVAVVRRIGV
EVIADFWSRLAAFVSLRRPPRRWDLVPNQHPFLASDDVGGVILVGPTADSPPASP
>L1-7_SBi_pol#LINE/L1 2347-5903 via tfasty with LINE1-39_ZM_pol, 7 frameshifts. LINE1-1_SBi basically identical and in even worse shape. [Sorghum bicolor]
LMDPAKILIWNVRGLNSSSRQDSLRSIVDSSRSDIVCVQETKITGMTRRIILSALGSDFSDFAAAPSVGASGGMLIAWRR
HIGVSGARRVDNHSVTIQFAPEDGQAWWLTCVYGPQGNEDKIQFLQELRDIRAACQGPWMIAGDFNLIYKDEDKNNANHN
RAMMGRFRRFINDLALKEIPLHGRKFTWSNQQDSPTLVRLDRVLCTVDWEDKFPNCLLQSLASDDSDHCPLLLGLRDNIS
GRRRFHFESFWPKLDGFQEAVSSAWASIPAGPCPFLTLDKKFKAVTKGLQSWSDRVVGHVNFQLALAREILHQFEIAQDS
RQLSPGELWLKNNLKKHSLALASLKRTIARLRSRINWLNDGDANTKLFHLHARHRKRKNFIGKIVAGDQICTSHEDKAAA
IDDFYENLLGTCTAREYTINLAEVGMPHDLADLELPFTEEEVWSTIKQLPSDKAPGPDGFTGRFYKACWPIIKDDIMAAV
SAVWSRKFVNFGTLNSAYITLLPKKDGADQPKDFRPISLVHSFAKLITKMLANRLAARLQQMVSPNQSAFIKGRFIQDNF
MMVQQTARFLHQQKQPRILLKLDISKAFDSVSWPFLLEVLQQLGFGQIWRDIISGLLSSSSTQVLVNGVPGDHIHHRRGL
RQGDPLSPMLFILVMDVLGHMISKAANEGLLQPLSTRVLQHRISIYADDVALFLRPEAGDISIVLGILNLFGEASGLKTN
LQKSNVLPIRCGDSELATIQNLLPCPLSDFPCKYLGVPLSLRKLTKEQVQPIIDRIADQLPGWKADLMTRAGRRVQVQSV
LTGMLVYLAMAFDFPPWAIKAVDKIRRGFLWRGRKDAKGGHCLVAWVKVCRPQELGGLGISDLKTLSWALRMRWVWLQKT
EPHRPWAALPIQVPDQVRAFFSVAVASEVGDGANTLFWTDRWLHGQCIADLAPRLFAVVPKRRVKRRTVQDALTNQAWIS
DIQGARTVGVLVEFLQLWDVLMDFQLQPEVEDRHIWRLSSNGQYSAKSAYDGLFLGSTLFGPWERIWKSWAPPKCRFFLW
LVAHNGCWTADRLARRGLPHPECCPLCDQEEETIDHLLVNCVFAREFWFCLFRQVGLQNLSPQSPDLSFHAWWEKVSSSS
EVGLMRQGVNSLIILGAWTIWNHRNSCVFDGAAPNLAGALVLAGEERRLWSMAGARGLSFLAALLPGS
>L1-8_DR_gag#LINE/L1 1-873 may start frm a later methionine. [Danio]
MTSKFTSKARAAKQGAMASDGPAEIREKDARLGHVTTPPGFAELQAALKAAMDEMARFSANLSTLQADVTSVKTTQFQMK
ADAAAMAQRLDEAEARIGVLEDENERLQQMAEKSVKECAELRDSVSDMVNRERRMNLRLIGLKEKSENGNLRECVRLILS
EALDVDISETELQRVHRSLVPMPDENKPPRPVIMRFHSFLERERVMAAVRLKVREGGSIKWRSSKISLFPDMTRDVAEKR
RRFTAVRKRLHELDIRFTLAYPAVIRFTWKGQRVSFDDHSKALELLSEKD
>L1-7_XT_pol#LINE/L1 1508-5224  L1-7A_XT_pol 90% identical. [Xenopus (silurana) tropicalis]
MTSISLCSWNVRGLNSKYKRAQLFTYLKKYSPTILLLQETHLVGSKILALKKPWVAHHFHSPFSSHARGVAILVRKNVMY
ETLHVCLDVQGRYVILQCKINSTPITIVNLYNPPPGNLDVLTTIFSKIANLPPAPLYIMGDFNALLHPNLDKLNSLNHTP
TALANWAINVNLTEIWRWKYPNTTQYSCHSATHKTLSRIDFAFASPEALALVDDITYLPRAFSDHSPLMLQLRIGQIPSS
KIWRLSPLWLANDMVKERNASEYKEFWENNNGTASIPTCWETSKAVARGNLINAITAARNTTKQICKEAENQFNIAEQAH
AINPNAETHTNLTKAQQQLELTYTTLTNKKLLYTAQRIFDQGEKNGKTLAYLAATANSVTVIPRAISEAGNVVTKPQDIM
QVFYEYYATLYKSKTTQSAQTIADYLAKLPIPKFDRQQTNYLNNPITKQEIIDAIQALPSNKTPGPDGLPPEWYRSVIDD
LAPQLLTMYEEAFNTQQLPPSVYSALIILILKPGKNPEQCSSYRPISLMNTDGKILAKILANRLIKIITAIIHPDQSGFM
PNKSTTCNLRRLYTNLQIAHENSGSRIIVSLDSAKAFDTVEWPYLWETLKAFGCGPNFITWIKILYKAPQAQIRVNNLIS
PPFSLHRGTRQGCPLSPLLFAMAIEPLAIAIRHSTNISGFRLHNIEERIALYADDILLFLADPHNSLQEILKIVQEFGSY
SGLRVNWDKSQIMPVDTIPIVDRPTTNQLTWADEIKYLGIIISPLCSLFQEQNLEPLYTNFTSTTATWQNLPLTLWGRIN
LFKMIFLPKFLYFFRNAPTTIPKKFFSKINGTISSFLWAGKQPRFSWKSLTAPLGKGGLQLPDMYLYHIAAQLSHLHPWF
LPDAEDPNMTLIASILGSLEAMTHCPLRRLCDSNPLPPVLLATYQSWQTARKLTKSTPYLLAPHTPLWGNSHFMHFRYLE
DFIYWPKMGIKTLGQILHKGTLMSLPQLSEQLPDQRIEQFRYMQLRHAFKAQFGSYQIKYQNYPIDSILRNPNPKKLVSN
LYSILQDTIKSPFERALVKWRQSTPTITDEQWEEATDSAYNFLISTRDKLINFKILHQFYYTPARLNQIYSDRTSACPRC
QEAQANFHHIIWSCPQIQKYWKGIMKCLNDNLAIPHILAIEFCLFGVIDEVIPLNKTRIXCRSLLFYAKKNIILNWLKPT
TPTISQWLNLVNKMLPMIKLTYEARGIPDKFDIEFGAHG
>L1-6_XT_gag#LINE/L1 161-1060  [Xenopus (silurana) tropicalis]
MGKYGPKPRTEAAARLERFAHGSQQPTEPASPPDSPQRQVSKDAQSEPSLNDIMGAVLENRTTATGQFEGLKIDISLIRQ
DMQAIRERTTEVENRVSTLEDQVAPLAQNIQLMQTQLKHALDKNEELENRHRRNNVRIVGLPERAEGNQPVQFIETWLRD
TLGPENFSPVFIIERAHRVPARIPPPGAPARPFLLRVLNYRDRDAILQKAREKGPIQYNGTHVSLYPDFSPALQKQRASF
QGVKRRLREANIPYSMLYPARLRIQDNDATQFFTQPAEVDRWLETKGPGNRRAPRSPRQH
>L1-5_Mad_gag#LINE/L1 308-1876  [Malus x domestica]
MAGGSPKEDLEELGTRFGTNLILSEKEQGGVCIERKDVEGALLGFQYTLIAEVLTAKAVKGDVFVDCFMSLWRGREGVSI
REIGDRRFLARFAGKRDLQRVVEADLPWMFKNDLVLVADRTEKGLNRWTPLSLGVFWVQLHNVPVLSMTQAVAETIGSLM
GEVRSVDKTGSRDCIGRFLRVKIGFNVREPLMRGTFVTFPDDGKIWIDFKYESLPNYCLICGKLGHPTRICKETLDERTD
PGDCTKTRNEAFAFRGLDAVSDLRGNPLGAGPRSRASSGSNGGRSGSERWNDELGGGRRSGRSSTASGMGCQPQKFASRS
QSGSECTAPLEEEVIDTATSPSKPRWSSNKMGHRDNVLAGKIRRQRLAEEEARSARELAFDAGLIGPGGAVAAGAEHVVL
NDHYEQEGRVDTVSMTLNGGSTFDLNLVPGVGEDGDSVSASRREASDGRGCVSGCDLATDDDPFELEAIIEAVMNENKGK
KRSAREVEYDEVNPCVEPKRSKLSRKSYVEAEETSREGSPKSK
>L1-4_VC_gag#LINE/L1 141-1733 Poly-Q region collapsed [Volvox carteri]
MARNSSTDQAAGVTAERSEATISISLLREITKMEQPFGKLRSLAMRAIFQGNYLENRKQVIDIMAGPIGHRIVQTVQQEL
KAPYVFVGEPVAWEARNDEGVVGQINVYVPEEWITPVKNLADHCGRINLADLHLGDYHIQDLVVDIVGASAQYFRLTGLP
PAFPQKCLFWLIAEAYGFDVDEYGKKWGIVEASLTTAVVWVRWDQPALPARMNIFSIEEDGRRIHRGAWRAQHTYYDTQT
PALPRPPKIQQRNRLIPNLPPPISAAAVIAARARPNLATPAVGEVGGSSNARQPMATGQPQTIQQTTRQQQMQNRVSNEE
AAEMAGRAAAAVVRRQVQQxQQLSYTTTNQPGLPTSASIPKTHSITHPLLGQPIQDVAGNRPDEQQWQLQNRRTHRGNPI
LPTDQPVLGKHADKPTSRTSSPGVSPQHKRRDSVISPPRFHVLPHDDPGDLMQVGEEEEVRNIVVVRGNGDTEIPPR
>L1-5_VC_gag#LINE/L1 223-2376  [Volvox carteri]
MSAATSSRRQTRGPPQPPALEVACTQELQQAALRANLLVVSFTTIIRDRSRTELEGHTRPLQKSLYQALLPLLHSAIANR
RQMPGTAGGERISNCAAGLSLTYDLAIPQQQRHQLISLLDTRSQLRTTVAGHTPVWWVAREGPYYVIPQPLQILTHGWPL
GLTESAVRGQLSKLLPADVILGVSPWYHYRVHCPIPALDKWIISLRSGYRLPNDLPCRWHVNGALDFVVLATPFETEAYQ
TQKSAVAHIAARTMTTAGPNDDITTTVRAESSYAAATATQQREGPTLTTLHQQPLQQQAMNGDVAASPQQEAGATAVGRR
VAPAAADGQRQDAIVHTIQREPNPAAPTQQEAGDTAVGRRAASAAAVGQRQDAIVHTIQRVPLPAAPAQQEAGDTAVGRR
AAPAAAAGQRQDAIVGIIQRESQPAVAPQHDSLIIAASQWDAIVDAAEQRQDATPPTTRQELQTTAKARRDSPSQADLAT
LEADRPYTTRSVRRRTLSRDLSSESAEDDAPMQNAYDTLSPLVDLQLEGFPLANTWPEALQSLYSLSGTGPDMDLDLM
>L1-6_CPa_pol#LINE/L1 922-4384 via tfasty with L1-3_CPa_pol, 5 frameshifts and 2 stopcodons. Has a 50 AA or so deletion. [Carica papaya]
MIGKIISWDVGGINDAGKRKIIRGCLGRWNPIIVCLQETKMEIISDFTVKSLWKVRRVEWKFLPSKGSAGGILLMWKRDW
VTCMDVKIGEITISCLFSNNNNTTWFFSGVYCRGNDTERTLLWQELNKCFNCWGRNGIIGGDFNTVLRRSERSGTQFNAT
LANEFLVNMENLDLADLPLKGGNWTWSDQRDPPTFSRIDRFLVSADLPLILPGLNQMILPRPTSDHFPICLVTDGIHWGP
IPFRINNKWIQDSKFKELVTEQWNRYPGRGTASFILAKKLKALKSAIKEWAKVAEINEDNNIKDYLYEIGELDRIEGLAG
LTAEERDKRDLLKINLANCMHREAVSWKQKSREKWLKEGDRNTKYFHCLANHRRRINYVEEIEVDGICIKGNDNMRDRAM
SYFKRLYMEEVECRPKLNGLQFDRLDTLDKLQLEAEFSEAEIHSCLKECNGDKAPGPDGFNFKFLQLYWEVLKTDILDFF
NDFHKNGSMVRSLNSTFIVMIPKKSGAKNIKDFRPISLVGCIYKLLSKVLSKRLSNCLHKIIGASQLAFISGRQITDAIL
TANEVVDDIYRNNKKGVLCKLDMEKAFDHVSWNFIDYLLDRMGFGEKWRRWIRTCISTSSFAVMVNGGPSNFFQPSRGLR
QGDPLSPLLFIIVMEGLNKLIEKARTLQLLRGIEVGNFGSKIEITHLFFADDTLMFCQPDVNSLLTLRCILLCFQAVSGL
KINLHKSELVEIGNEGNGQSLAQVLNCRTANLPIKYLGMPLGARYKDRRSWDPIIESVENKLAGWKRNFLSKGGRLTLIK
STLSNLPIYFLSVLCIPKTIAKKLEAIQNRFLWGDEVNKRKIHLVKWEELKKPIASGGLDIKSVITFNQALLSKWTWRFW
NEENSLWRNLIVHKWYGEDLHNSNFLDHSIHGFSLWKSIKQVGNSISNFSRWSIGNGMKIRFWKDVWIGHDIADTFPSLC
YFQGEKALxIxTKTEFLVKSLYSQLAGHRSKLPANIVWKSKVPPRISFFTWEAARGSILTLDNLQMRGITMVNRCFLCKT
DVETCSHLLLCCPFSQSLWSMVLNIMNLSWVTAGSVKDELFAWEGLCKRKTNHKIIPLIIFWIIWKEMNNRAFEGKESDF
VAIKDKWLHLFGSIVLGHNLDNIVDFASIVDTLTDL
>L1-6_Cis_gag#LINE/L1 665-2104 [Ciona savignyi]
MHGQDGQVPELEITLTRSILIKLSGNVELISVSSFMEIFAEDAALHYLGPQVEGVITENFQQSEFLLTLKSIENLEPPNI
EEEIKIINDKNLTFTGPNGSIMDVSAKVPSPPMEIVTLYPVPCLVDETRLRQLIKKYKWGKVDSFYFGTHRHFPNIKNGW
LTIKMFDVNLNNIPKVMKVGGRWVTVTRPGESHLPLCRYCKERGHPQQKCPKKGWCNHCNTHGHLTRRCRSFPPTAGNYN
GYPSQTRQINQNQTRYNTPPTTTETWTTVISRSKAKQQPKQTPIETSNPFSSIAPQETIDTFEENNSTIIQSGPDLSLPQ
RPQKTPKRNKQKPQSANSTPIQFEDIMLPTIKPRTPTSSTTGNIPTIYTTPPTPAPHHSNNLTEPXENLTSDPTNTNDNP
GPSKLQPKSTTPTTSSAASTDNSPESACYIINKAHKEYVRNPNTNPPPYIQRTVKELRTQLFEFNKDNSPKKRRLEDTQQ
>L1-8_Mad_pol#LINE/L1 10-3852  [Malus x domestica]
NLHNDKVQFITFVYAYPQKHLQANLWDQILAHTPTNHPWCLIGDFNNIVDSTEKLGGCSNTTTYMNNFINFLNRGDLISL
TASGVPYTWTNGHSDNTRIYERLDRGVANPQWLREFHDFSLHNFPIFGSDHSPILLTNNVNPVRKGSYSFKFEAMWLRHP
NFRNFVKSAWTCTNTSRPQEKFVACAGTFKYLVRKWNKETFGNVKDRKDKLLTSLCDIQNKIMRDQDNSISMDDEVKIRS
ELNRVLQEEEIMWAQKAKVKWLQLGDKNTKYFQTVASIRKKRNEIKSVKDSNGFWWNYGEGLEQVFVQEFKLRFSCDSSP
SQETLATMVDIITPCIDHTHNMQLLECISDEEVWEAVNSIGALKAPGPDGLCAAFYQGCWEEVKDTIIPMIKDFFQNNSS
LRFINHTNIALIPKVDNPETVSNYRPIGLCNVSYKIITKIIIKRLKPLLDLCISANQGAFTPGRSIHDNILIAHELFSSF
KVKKGKTGTMGVKLDLEKAYDLLNWDYIRYVLIRFGFNEKWINLIMECITSTSFSILINGSPHGYFYPKRGIRQGDPLSP
YIFILCMEPLIRHFNRLASTPKSHVGILSSLGGFRISNLVFADDCLLFARATPKGARNVLQILEMFASAAGQQVNFHKSS
IYFSNNTINQDRNNIVNILSIQHKTTIGKYLGIHNIVFWKDLVNEIELIKRVKQKLAGWKGQTLSKAGRLTLINSNLTGM
PNHVMSCFKCPNRVTTKIDKECRDFFWGRNTKLRPMAWKKVCSPKNQGGLGIKRIDHFNNACLAKLGWKVLTNKENWWAE
IVKSKYLRKSDFLNSKIKQNYSLAWKGILSNRNIIHEGMRWIVGNGEDILFWTHQWVFPYPLFHLIPVNDRNNIDWNLKV
SNFIVHNSWDSIKLATVVDGDIIRKICRIPLPLQESKDKLIWGLTNNGNFSIKSATWLQNRNNHSSNRLTLLKKMWKLTI
PPKVKMFAWLMIQERLQTRKRLSRFVKNIDKLCPLCNTAEEDQCHLFCNCVFATKVWSSTFGXFNNGNISTNDNFFDWME
SLSSNDKDGLSDLSKVILNCWQIWMERNNLVFRSVPPVPARCVSIAGSVGSAFLKANGKCDPNEALPISSFIKWHPPDRH
DVIKLNFDGSVSNNCAAAAFVLRNSNSQVIGAGALNLDGTTISVAEAMGLREGLQCARRKGFTKVMVEGDSKLIIEAVQG
HWGIPWRVSSIINDIRILARSFSHVDWKHIFREANFVADALAHLGLSLSNPHYWDFCLPDVALPAFNFDCIGNGCTRGFV
L
>L1-18_XT_gag#LINE/L1 152-1102  [Xenopus (silurana) tropicalis]
MGKHTQKTRSDAAAKLEQYARTIIQDGARSTPPSPDRQTQVEQEPSNPNAPTPNAQDILTAIANCQATLTATLTTKIEEV
KVELSLLKHDVQNIRERTGAIEGRVSILEDRTTPLPNELAQLHKALKQATERMEDMENRQRRSNIRVVGLPERSEGQNPE
QFAEQWLKEMLGMDIFSQQFVAERAHRVPTRAPPPGAPPRPFLIKLLNYRDRDIALQAARKKGDIQYQGTRVSLYPDYSA
ALQRQRGTFYGVKRRLRDLGINYSMIFPAKLRVMDGGKVHIFDQPAGAEHWIDSRASPPQRNPQRPSPAHSPRQQDT
>L1-16_XT_pol#LINE/L1 927-4673 via tfasty with L1-2_XT_pol, 2 frameshifts. [Xenopus (silurana) tropicalis]
MAQQNRNLTLLSWNIRGLNDRIKRSIVMGQLRKSGADVIMLQETHLIGQRVRALKRNWIAAVYHAEFSTYSRGVAILVRK
NLNFHLITDRAGKYLILKCTIQGTXYYIPPPAELQILSEIIQKVAILGSFPTIWCGDFNMVPNPSIDRLRPVTSDSISFP
AWIEATNLTDVWRWKHPQLRQYSCYTIATSALSRIDLMLANPEFLKRVDKVYFTSRLCSDHAPLILSLTGNTNNPSQMWR
LPPKWISTPKVAEAFTPLLTEYWEQNTDTASEQIIWDACKAFTRGLYISLIATNRRENDANINTAKISLEKAEQKVVTDP
NNTYKEELANAQRHLDSLYVEKFSQRELYRKAFWFEKGGKNGKLLAILAKDDNPHNVIANIKDDNGNTLSQQEHIAERFK
QYFQSTYAALPPLPQEQLCNFLDSIELPSIPPDSKMHLDRDITIEEIEEAIADMPPGRTPGPDGLPAEWYKAHSQILSPK
LCTLYNNITDTNVLPESCYMAHITLIPKVGKPSDDCGSYRPISLLNCDTKIFAKVLANRLKRIVRSVIHPDQTGFMPQNA
TDINIRRLFNNLEYDHDNKGNRIVVSLDTAKAFDTVSWGYLWEILRRFGLGGRYRAWVRALYWQPQARVLVNGRLTDPLP
LERGTRQGCPLSPLLFALAIEPLATLLRDSPNIPGLQAGRLIEKVSLYADDMLLYLANPNEALSNALSQIEEFGIYSGLR
VNQSKSLIFPIDPLPPPQAKQIGQLQVVQSFKYLGVVINKQHTKFEEGNLTPIVQNLSNKIDTWAQLPLTLPGRINLLKM
VFLPKFLYIFHNSPVPPRAKWFKRIDSLILRFLWAGEHPRISLKTLQAPVTQGGLALPNMRLYYLASQLIYVHWWLTPHQ
DNTSTLLEANILGSLEALANLPYRGNSKHYTTTTPMRTVITAFQKALKHVQGPQQMWSRWTPLWGNCSLPNFTSLPNIAQ
WASHGVKHLQDILTNGDIKHFQTLRESHQIPQTMHFNYLQLRHAFHSQFPTRPVELKETTLEKYIRRENLTKPLSWYYTI
LWQANPDPLAKVREKWMRDIPSLTEETWVDALRQIPDLTISLADRYIQMKFLNRVYLTPYRLSKMFPQTPDTCIKCDRET
GSYIHVFWNCPAVQVFWKEIVNYISDALSFPRILSPIVCLLGVAEDLGLSHHSRLCYLQLLYYAKKAILLQWKSLAPPTL
PFWRTLVNNTLTNQKLTYLARGCPKKFDAIWGPWIAFHETPGNTADNIP
>L1-21_ACar_pol#LINE/L1 1868-5626  [Anolis carolinensis]
MAVHRLKIYSNNVNGFNSPNKRKKIWHHIKKGKYDLICLQETHIVHKHGANLIQNGLGNMYYASDSVKKRGVVTYVNNKI
VSEISFKDSEGRVLGVTLKIGDRRILLCNIYAPNGCKTKFVSNLYQKILEHEYEDLIIVGDFNGVVDAELDRSNIKGTPK
KGGSGKLPPSFIQMKEDLGLQDIWRHRHSRERDYTFLSQRHLTWSRIDMVWGTKLIASQVASIRILPRLYSDHAPIEIIL
EEKRHSKGEYRWRLNDMLLKEPMDQNRYRKVLTEYFQLNNEKDSDINSIWDASKAYIRGHFIQQNIRKNRDKRDKQKDLE
GRITALEEKIKTNPSDKESTFKLEAVKKQVESLQLEEIGKKMTYIRQQNFENANKIGKWLARKINKRKHQQYIDKIQEDN
NTYLEWKEIENQFVTYYRKLYTEDNISREKVMQYLGRQNIKKISESQRECLNKKIEIEEIEKAIQRLPPNKAPGPDGLTS
IYYKTFHDILCSPLQKVMNRILEGGNVPQTWENANIVLIPKKNTDNVKVANYRPISLTNVDYKIFSSILADRLKNVLVER
IHEDQCGFLPGRQQKENIRVLLNAIEYYEKNRQKEVAFLFLDAEKAFDSVNWFCMFEILAEMDIGFFFKNAIKKIYSQQR
ARIIINGQLSDTIEVEKGTRQGCPLSPLLFILTAEILLEAIRKREDLKGLRTKNNSFKIRAYADDIVCIIEDPLNQIMAW
MEAIESFGEVAGIKINRDKTKILTKNMSQTQKAAIQIKTGIEVVKKIKYLGIEFTASNTQLEKNNYDKKWREIKKKLKRW
ESLPISLLGKIAIIKMKVLAEILFLFQNLPILKNRKPLGEWQRETNKFIWGRKRARIKFQYMKDDTQRGGLGVPDFQLYY
DAAALEWVKDWATLKKTRLLALEGQDLNKGWHAYIWKREGFKERNFNNHYLRKALLLIWEKYKSRFLSKTPLWLSPLELE
HKREIPKERWLTYKQLLKIDNSGIQLKPFEEIKQIEPSITWLNYWQIRERFKADNQIGFERSNTVWDKVLKLETRTIKML
YQQLLIWETEEVHVKENMITWARECGHTIMFGEWERYWQKKIKYTYSTMLKESWYKIFYRWYITPAKLAKFNKGKSGDEC
WKCRKSKGDLYHMWWGCKKIKGFWRSIQKEMEIIFQRKFVLKPAYFLLGLTDFFKDLNNEKLFIYMISAARLVIAKKWKT
PEVPSLEQWILKLMDIQNMDILTQIISQNTHKGIKTDWSKLCTYLKEKRNLDT
>L1-44_XT_pol#LINE/L1 2082-5885  [Xenopus (silurana) tropicalis]
MGLKILSHNVQGFNSPTKRRKAFQYYNSLRIDILLLQETHFSATSYPKFLHKAYPIVLMANSPNKTKGVAICIKAGLQLQ
ILETYRDPNGRYLAIKILMDDQTLTLVSYYAPNTNQLQFFETVTSHLSHWAEGQLIIGGDTNSILDRYWDRQTISLQNTN
TPPHISPEGAKIKTLCTSEGWVDIWRELHPATRQYSHYSAAHKVYTRIDHIWVSQGLVEMPQSSRILNTPWSDHSPILYT
ITLLHLPNSRGRWRMNESILKIPELYTQIETSLKTYFRENINSVTSYATLWEAHKTVIRGLLIQCGAQRKKARNLEIFQT
TTQLNDLMHQQIDNPMVDLRSSIDLTRTKLDLLLTHKMEKTWKWTQQKLYYHTNKPGRLLARKLRRRLDYTPINKIKNKN
GFITTTLQSIIQEFYNFYKELYKAPPLPSNTKYDSFFRDIKLPTLTSTQHQTLNATITEEEVNIAIKSLKLPKTPGPDGF
PALYYKKFSHILIPHLTAMFNQLQKGDKFPAQTLMASITPIPKPDTDLTECKNYRPISILNLDIKILAKVLANRLSVILP
SLIQRDQVGFVRGRQAADAIRRLILLTAWANKTKTPSMLLKLDVKKAFDSLAWPYLKYTLRKWGIGINFTRWIQTLYDNP
TAKIHIGPYTSPSFTIERGTRQGCPLSPLLFDLALEPLAIAIRNNPDICGCNQGDQQHKLNMFADDITLFITRPLLSLPN
LYLILQKFGSISGLTINHTKTEALNINLPHELTKLLSLNFEFKWNKNYITVLGIQLTKTFEQLYQANYPKLYGKISKLLE
DWGKYHISWIGRITAIKMVLLPKLLYLFRVLPIPLKRIDLRKLEANLSAFIWDKKPPRIRISTLQRSKMEGGLGLPNLWK
YYIAAQLTHIPLLHTNNISPLWVHLENSMAAPFTAESLLWTQMKHRPSINSPTLRHSLTIWDTYAALYKLQSPHTPVFPI
FKHPQFLPGQQICSFQWWSDQNLKRVGNLLTVRGPFTINYLKENYKLPNSEYFRASQILHLVSQCWKQNTSQSTKQTYFE
KWCTDGITPLKAITIMYQHINSPKELLNLQYIKSWNKELNKALGEPDWKKLWENIRKSSNNTILLEAGYKVLFRWYLTPK
KLAHIYPNISENCFRGCSIPGTMAHVWWTCPQAIRYWIRVYNMIFAVLNVNLQKDPYEALMGAPAQGVTNIQQKLINQIF
LAARQVLAKSWKSPSINYNLLKPKIDWIFTNEKLTSIALDKYPLFLKIWQPWIDYRFGGTLSTSTLSA
>L1-35_XT_gag#LINE/L1 164-1270  [Xenopus (silurana) tropicalis]
MGKNRAQPTNKRREGEIQDGARSHTEAPNGSPGKRAGDTAGLQISAQAAKRLERYARDPSLHNAEPQPDSPPATTTQGGT
QTEQGDLSKAPSPASTVHRHSSEAHQGDIDPHLPPAQQALMDQSTLAEIVSLLNTNHAMTIGKIDELKSDFTILRHDIQN
IRERAQEVERRVSDIEDTVNPMPEQIQSMSQRLANMEAKADDLENRLRRNNIRLVGLPERAEGGRPEIFLEQWLRDTFGP
TVFSSAFAIERAHRVPGRPAPPGAPPRPLIARLLNFRDRDRILREARTKGDLMYENTRVSIYPDFSVEIRKQRMKFTDTK
KRLRQLQLPYSMLFPAKLRVVDNGQTLFFTSPQEANTWLEHRPARSPRR
>L1-16_Mad_pol#LINE/L1 539-4669 via tfasty with SHALINE10_MT_pol, 3 frameshifts and 3 stopcodons. [Malus x domestica]
MNALCWNCRGLGDSRAVQALLGLTQHHRPLVVFLCETKCSETVIYSKQRSLGFDKSFAVSSNGRLGGLAVLWMDEVEIGI
LSSSVNHIDMECRLEGSEQRWRLTGFYGNPVTANRHLSWSLLANLGQRSSLPWICMGDFNEILSVEEQLGGNQRRESQMD
GFREAVHACQLIDLGFVGSSYTWTDNREDEVRCRLDRVFASQPWLNLFPVTRVCHLNPSKSDHLPILVEIRSSVESSSRR
KSKRFRFEEMWLREDSCEGIISSAWSKPVVGFLFSKCVRRFVSPDVPCCMAKEVFGSTKAEIARFGISWGCCLSTHLRLR
LxGKGxVVGQLDSLLGREETYWRQRSRVQWLQEGDRNTKFFHLRASNRKRKNNIKGLRDANGVWQDSRAGIEGTVVGYFQ
NIFHSRGVLDSAVQEVMGACSRRVTTEMNEELLRPYSEEEIRFALFQMHPSKAPGPDGMSPLFFQKFWHVVKHDVVNAVR
SFLTSGRLLREACFTHVVLIPKVNQPQEMSQLRPISLCNVIYKIGAKVIANRLKKFLNVIISPHQSAFVPGRLISDNTLV
ASEIGHYLHNKRWGREGSFALKLDLSKAYDRVEWDFLEAMMLRLGFDSRWVSVVMMCVKSVSYSFLVNGEACGYVEPSRG
LRQGDPLSPYLFLLCIEGLSALIAHKEQRGVLSGIRICDGAPSVHHLLFADDSFLFGKANLEECAEVQHILDVFSQASGQ
EINLGKSSIAFSANVRGREQQGLANFLGVQLVERHERIWACLRLWGKNKRQTFAYIKERVHKRLSGWKGKCLSGAGRELL
VKVVAQALPSYAMNCFLLPKTFCDELHQLMARFWWGSDPDSRKIHWKSWDKLCIAKPEGGMGFRNLYAFNLAVLAKQGWR
IVQDPESLTARLFKAKYFPNTSFWDAPVPSSSSYCWSSILKARMVLEKGSRWLIGDGASVRVWKDRWVPRPSTFRPITMP
PPSREDMRVHELIDVERRTWCDTTLSEFFEEEDREHIRALPISYRLPHDKLIWHYNDRGIFTVKSAYWVAWDSVKPPSLS
ASSSASGGNPFTPLWKAIWKAKVPPKVRNMVWRTCQDILPTKENLSKKGVASDSMCVLCSGEPEMVVHVLKDCxFARATW
FATPCSFLVDSVPCGSVKEWFMLLLQNHHLAFDFMCMVVWHLWQERNDRIWKGKHGSPAVVAQRAVAWLQEFQVAAELVT
AAQQRTPRPRDGGGSGSMRGGVAEDWVRLNVDGATNLQDKVGGAGVVLRDAQGHFVAATTCFLPSVTSALQAEMLAIKHA
VELAQQLGFQKVQVRSDSSQAISIINTCVDRASAMDLLAGDVLHIADSFTASKFISVSRNNNGIAHCLAKVALSVGTSVV
WVEEPPSVIQDLLIQDIL
>L1-12_DR_pol#LINE/L1 1772-5557 [Danio rerio]
MQFQEYRVITLNVNGLYNPIKRSKVIAKMKKEKLHVIFMQETHLNNLEHEKLKQKGFKNVFYSSYRRGKRRGVAILISNC
VNFRLLAEFTDKEGRYVLVKGLLDKKEVTLINVYIPPEQDNSCIREVFQLIASEASGVLICGGDWNAQMQPKLDSTNALK
RLTPRARVTKKLLMELGLIDVWRELHPLDKQFTFYSASQISYSRIDYFFVFNSDRHRLIDCKIGTRDISDHSPVYLTIHL
DNKKNNSLWRLNTSILNDSTYKEFIQKEIKDYIDNNNNGEVSPSVLWDASKSVIRGKLIALTSHKKKEKCKKMFDLQENL
KTLEREHIMEKKPHILNQIKNIKKQINTLYEEEIEKKAKFTKQRFYENGPKALKLLAWRLRKQQAERTISEIRDPITNRI
KHNQDDIHNIFETYYRNLYSEISTTNPTEINIFLESLDLPSIGTTQNKSLMAEITKEEIGKAISRLKVNKTPGSDGFPVE
WYKVFKDQLIPMLHECFNYMLKGGEPPRTWSEAIISIIPKEGKDKKECSSFRPISVLNTDYKLYASILAKRLEDIIPELV
DLDQTGFIRDRQTQDNIRRVLHVIDHVNKKKTRAVVISLDAEKAFDSVRWEYLYLALTRFGFNEDFIRCIKNLYSSPNAK
IRINGHLTKSFVLERGCRQGCPLSPTLFALFIEPLAQLIRDEPGIKGITVRGSEQKICLYADDVLLFVGTPELSIPNLMS
VLNKFGTYSGYKLNIQKTQILSFNYFPQKDMQNKFNFKWNSTSFKYLGIKITKDSTQLFDSNFGPINKSIKSDIDRWSQL
PLEMHNRIETIKINIVPRLLYLFQSLPIEISSKQFREWDKWISRFLWRGRRPRVKYKTLQLSKEKGGRSLPCLSDYYKAA
QLRPLVICCNPEYTAKWKDLETSQIDIPLQSLLGSKILHKHYLNSLNQWSKVPLRIWFKECNSPLLEKQSRLIKWVAFDP
DFKPXKIDGRFQAWYRLGITTFSLISSNGELDSFQKISDXYGLDKCDFFRYLQTRTYFNSEIRCSENHPPNLIDLVIDIY
KNKDNRRLVSKLYSAIRSTKEESTNYIRLKWERESNLVISEEDWLNICSVQATSSNSGMWRDFCWKNLTRYFITPKLTYM
QTQDKDRGQCWRKCGEDLANHFHIFWSCPAIQPYWKDVKQIIRNIFGDDVDLSFTTIYLGNIAANLTVKDKYLLKILLAT
SKKTVTRKWLQLEPPTKSEWLDIISNVQNMERMTFSLKLQMDKYLQYWEKWIVLMPLHSVI
>L1-10_DR_gag#LINE/L1 136-981 [Danio]
MPPKTIKLPQHSKPSGQMEEEGKVLASKKLTEPQSEDNAATNDDILRAVQSFRDDCSKQFTDTMEAINGIKTDLLSQAQR
IGAAEERISQAEEDVTALQHKVNKLEETTEFLRNKVQDLEDRGRRSNLRLIGLPEKTEGSNMCTFIENFFPTILRDEFGS
PPAIERAHRVGQVNPNRPSAPRAIVIKFLNYQDKEKALRAARKMKELRYEGQRISLFQDLSAETRQRQRQFDGVKAQLRG
MEIRYGMLYPAHLIVTHVGQRHVFKTVAEAEDFVRSVRTNI
>L1-12_STu_pol#LINE/L1 1854-5487 via tfasty with L1-15_STu_pol, 3 frameshifts. [Solanum tuberosum]
MNLNIVSWNVRGLNCGKKRCMIRNMLRIWKADVVCFQETKMEGEIANIVKEIWGSRWADYVQLEASGTRGGILIMWDKRI
WEGEVSSVGAYSVSCCFSGKNQDFKWHLTGVYAPNDRVEREETWWEVGAARGLFTGPWVLCGDFNTVRYPSEKFNCSRIS
RSMTDLSEFIEDMELMDLDLAGGEFTWRKGERHSTAARLDRFMISEDWDTKFRNIKQSILQRIVSDHSPLMLQCGEWGST
KSYFKFENWWLTTEGFNDRVKGWWGSFHFQGKPDFVLVAKLRALKEKLKEWSKTSQGNLKQQKQLVLNQLAELEMIQDQR
ILEEGEIVSRLALTTELEEIVKNEETTWRQRSRAVWLRQGDRNTSFFHKVANSHRRVNTIDKIKVREELLTEPAEIQREI
TEYYENLYSETEDWRPELEMRECPMIDEDDNNQLMAPFEAQEILECIKACAGDKAPGPDGFSMAFFRQCWDIIKTELVAA
VQNFYVEGVFEKSINATFVTLIPKKIGAEELNDFRPISLVGGVYKIIAKLLAERLKKVMHKLVNKQQMAFIKSRQIMDAV
LIANECVDSRKKDKQPGILCKLDIQKAYDHLNWNFLMKMMQRMGFGQRWLKWIRHCISSVKFSILINRNPCGFFPSNRRG
LRQGDPLSPFLFILAMEGLSNLFQTARANGWIRGFKVGENTRNNLEITHLQYADDTLVFCGAVKEHMLILRVILNIFEAV
SGLHINWNKSFIYPVNTVPNIEDLAYKLGGKVGELPTTYLGMPLGAKSKSSGIWSGVIEKCERKLVNWKCQYLSSGGRLT
LVNSVLDALPSYMMSIFPIPAKVTKRLDAIRRNFLWKGSEDKKKYHLVKWEELLVSKRGGGLNIRDLSTQNKSLMMKWLW
KFASPEVSLWKEVITAKYGMEDKWMTEGVTSPYDCSVWRSIRNLWLLVKDRTKCKVGNGEKVAFWNDIWCGQETLKQAFP
ELHSLSQAQEASVADLWTGQGWNLHLRRNLNDWEITSIARFHDTMARATNLTEEQDRLIWKGERKGEFTVRSAYRELRPI
EEQQAGWPWRMIWRTKIPYKVNYFTWLLAKEEVLTHENLNKRKHNLCSRCYLCEEQVETVNHLFLHCKWTDQLWQMFIHK
RKIKWTKPGRITEVLKCWNSDGNAGKKEERWRIVPACIWWTIWNERNQRCFEGKNNNIQKIKINCLGLYYFWCKQVVIGN
SEDVSNVIDWL
>L1-14_DR_pol#LINE/L1 4-3059 Fragment, via tfasty with L1-10_DR_pol, 2 frameshifts. [Danio rerio]
IIKGPCRWRFHPRWLHDPKFMEFIGTQIDLFFKTNLKETSASIRWEAFKAYIRGQMISYTCSVNRKRKMELQNLEERIRK
LEEDIYSDLSNSNILKQELLILRAKYNEISATKAEASLIRLKQTFYEYGEKASRLLSWQIKQLQSSKAIHNIYTTAGNLT
SDPDEINEIFSKFFQMLYNTESSECSMDQTLFLDDLLIPSISIEAKKKLEEPLTSKEILNAIVNMKSGKTAGLDGIPIDI
YKAFKDKLAVPLLEMYEESMLEGCLPPSLRAALITLIPKPHKPLDRCESYRPISLMNSDAKIIAKILALRLEAHLPSLIG
MDQNGFVRNRQAFHNIRRVLNIVHEMDGSKDTGILSLDAEKAFDRVEWSYLFDILSRFGCGQNFCQWVKTLYQSPTAEVI
TNNLISKPFNLYRGTRQGCPLSPLLFVMTLEPLAIAIRTHPSIKGIEIAGVEHRISLYADDIVLFLTKLKDSIPNLNKLI
NKFGKFSGYKVNYSKSSILFLNEQERQNPVIQHPYETSVDGFGYLGIKVTPQVKNLISANYTPLITQVNESLNRWMSLPL
TTIGRVNTIKMNILPKFLYLFQSIPLTPPPSFFSNMKKAFIKFIWNNRRSRLRLLLLYLPYERGGLRLPNLFWYFKAAQL
RSACYWFAGSPSIPWIQIERKCTGNLSLDTYLYSDSLKKLKQNTSNPFVRATILSWHESQVELGETPVLSKFSPIWGNAL
FVPGKSDKGFKLWFQKGLQKISDLYEDNILMSFETLKERYKIPQSHFFKYLQIRNFIRSKNHSYQCPTLSSLEEIAVKDP
SAKYKISTLYSKFVNASKESTNHKRLAWIEDFQIDITENEWEESCLQAQTLSINTRFKLIQYNWVMRTYITPEMLNKFNR
NILDICGKCLTYKGTLFHCVWQCEHLQFFWKEIIGVISKTIGKEIPVCPKICILGLFPPALSLKSYEQKFINLCLLHAKR
LIAIHWKSTHAPSLSLWIKEMSSCIAMERLTYSIKQKMHIFYKIWDFFLHFLNNSALT
>L1-13_XT_pol#LINE/L1 1543-5025  [Xenopus (silurana) tropicalis]
MAIKLTSWNVRGLNCPIKRRLVLDFLKRHSTSIAFLQETHLTGSKILALKRPWIGWAYHATYSTHSSGVSILIGKSVPFR
FDNLKTDPKGRFIFLHCYFYSCEILLVNIYIPPPFEGEVIHTLADHLALYPRALVLVAGDFNEVLLPELDRLWKHPLRSP
PKSTQLSRLMTSLALIDPWRETHPGVPQYSCFTSARSALSRIDMAFINTAAIPYVVDTAYLPRGISDHAPLQLKLELPHK
IKSPRPSINPVWLNILDNSKTVDDTINDFTTLNQTADXILPFWDSLKSYIRNSISAEITAYKKQAQKAIQALESQVSHLD
AVAAASPSPDNLKLLNEAQNNYTQAIKQKALNKLYFTKTNIYEQGERAGRMLAHLAKAHTTPPPVPALRDPLGNLHTDPQ
AVQEMLVSFYTDLYKTKLTAPEPEINSFLASLALPTLPREYSNHLDSELTEMEIQEAVNSFPLGKAAGADGLPIEIYKRH
SKILTPLLLKLFKEAXQLGQFPESLYEAAIVLLPKQGKDPQLCESFRPISLLTADVKIFAKVLARRLSRVITKIIHPDQI
GFIPAKTAALNTRRLYLNLAHAPAGLGGRAIAALDITKAFDTVEWPYLWQVLTHFGFGKKYIQMVQLLYKYPMASIRINS
LTTPAFALSRGTRQGCPLSPLLFAIAIEPFAQAVRAHPQITGFEYPGFTEKVQLYADDTLVYLGDRGPSLTALIELTQGF
GRISGLQTSTAKSVLFLVDKQQPNEPLDTCPLQISNKFTYLGIQIALPISQYHNLNIESLFQWAQNKFKAWETLPVGPAG
RIQLIKMFLLPKVLYALWHSPVYIPKKVFTQLNSLLSKFIWGTSRPRLRLTTLMKPRDGGGLALPDMYIYYVAAQLTHIS
PMVHSDISPPLYQLWALVSGNQGSPWPSLLTKKLPRNASSILVLQNRILQAGHKLIKLEQYPPQTPLWHNLDFPQLVPHN
PPRIWYTLNLTTIGDVWADNQVIPLQQLCDSRQLPPTQWLTHYKLARALTSQSARSNITVANSPIIDTLLIPAHKGKISS
LYKQLYKPQHIDPELRARDAWEGELGALLDVQWEWILATPKLVSFAYRHSLLQLYLIHRAYYTVQRLYAMKVLTSPLCLR
CGSEAATLVHTLWSCPCLKQYWGEITGWLTAAIPGWGTGYC
>Tx1-7_AMi_pol#LINE/L1-Tx1 1845-5226 via tfasty with Tx1-6_AMi_pol, 6 frameshifts and 5 stopcodons. [Crocodylidae]
MTLCIASINVRSVLSRKRWDKIMPILSGVKADMICLQECGIPWERDYKHFVKRWGWGPSWWVGSDVNKAAGVAILLKSEE
VEVRQVQVIVEGRLQWMVVEFEKKVLEIFNIYALAEREGRITLFKKLEVYVGGGRQQILVGDFNCIIEEGDRRGDGGEGE
LDSSSKVLINIIKEGGLKDVWAGEKVITRMEPSGRQVSRTDFVLTSNGLGIGKKEILDVTFSDHQMLRMEVSLDKSEGRG
KGMWKLNVQLLQDEKTCQEYVELYKGWRTLKRYYKSVWEWWTMIKRRTREFFRNIGRREVRKRVEELEELQARKQELLKE
AVRGVRVKEELEDIKRRTEEWFKRKTDEKLFLTRAPWVEKGEGWCKYFSVKLRKRRKELKAVRTEEGIRIEESAKVLDAA
AEFYKELYKRRGVDGRKMKVFLEGIKEGIEDGKKQKLEKLSMREVEDCLKACKRGKALGRDGLPVEFYEKCWQWLGTDII
ETYWEIMEGGEIGEDFAEGVVILIFKKGKEDVLGNWRPITLLNIDYKLMAKVLAKRMRDCLADVIQEEQTCAIPERRISQ
TLWLMRDVISDVQERKRNTVIMNLGLEKAYDRVEHDFMFEVLRRMGFPAKMTGWVKVLYSKAGSQVLVNGYLSKAFPIxT
GVRQGCPLSPYLFVCTMEPLAQRICDDKLISGAKIPGGEVKCTLYMDDVNIVAQGNVSIERVLKHTEDYGEVSGAKLNKM
KSTLMGVGNWENLQKFGLWVVEGVIKILGIPMDAEGKGTKAWEKLEVRVRQILGLWSGRMLSFKGKVAAVKTVLLPIILY
TGVVYPPSWQQIRRVQRQIFGWGMGSKRERVARTELYKARELGGWGMPDLESFVYTYFISMLCKEAMEGVREDCMFLPLP
GRKNIKKMGHVWGRLEKKPWAWQPLAHYVEWRVSxGxISxGSGIRVLKDCKRVINMKERYDNDSWDLTEGQVANVWKEVT
DNRVKEHTDIIWRCMNILPVRGFQHKCKISRCPREGCGAEESVLHVFWDCPFVQGVWEGVRRFLRAVNMNCDLTYDMVLY
GLMPKGLETQRLRTILLCVTAVIWKVRNLLLVKGLAFTRRECLELAIYxWNYMDQDMRIKMGKEKAEKRWRKEEWQCFFQ
KDKGTE
>Tx1-6_BF_pol#LINE/L1-Tx1 1885-5424  [Branchiostoma floridae]
TLMDWKLLTLNVNGMKDRDKRDLVFDLCKTEQVDVACLQECHVSSIEDKKRWTRQWGYKAFWSLGTNSSRGVGILLSSRM
EFVSSQTDLDGRVVSILVKADDTQYNVVNVYAPSTAAERKTFFEDLHQYMHPNATLIVTGDFNCVLDCSLDRYSDSTTTP
GNDTQDVVELRNFCADLGLVDVWRDQHPDQKDFTWRSKATSTRSRLDRFYTSTSNLGPCVIQACSFSDHDMVSLSVPPTQ
DTERGPGVWKCNVKLKVLEDPLFANDFEEKYKSWQESKQNCENLREWWEEIKSNTKDLIRQHSKRIVHSTNLVERDLLRE
IDILRSRLNVLRGCSDTMERYSEAKEKLTKLRLDRLSGQKIRSRIRAFEQDEKPTRFFFQKEREKGKKRLIHSIRNATGE
VVSSKNGILETFRTFYSRLYEPDQINTQDQQYFLDKLDTALSQVSRDALDKPVSLSELEDALKGMANGKTPGSDGLPKEF
YRRFWNLVGQDLLDVLNEGLEEGLLSPSQRESIISLIEKSGDPLDPANNRPISLLNVDYKILTKTLANRLKVVIEEVVHS
NQTCGIPGRSIVDSSCLLRDIISYVNDKNLDCAFLALDQEKAFDRVDHAYMANVLEKLGFGQNFCKWMKVLYEDVSSQVL
VNGNLTSRLSIGRGVRQGCPLSPLLYVLCIEPLAAAIRADPQIKGVQIPGGQGQEVKLVQYADDNTCVLTDQQSIDRTFY
LIGRFESGTGSKLNMGKTKALWLGGWRGRQDKPYPMHSWVSTHLKILGNPTGNGSRLAEEAWLQRFAKFKEKLDKWRHRK
LTLIGKVEVVNSLAAARLWYVAPVYPLPRSVKVKIEQEIRRFIWDGKTPLVKLDTLALSKDKGGLGLVSVAHKADALLLK
CVRKALTDPQDPGSRFAHYWLGLCLRRIDPESWSNTTPHSFNPPKQYEEIANLLGDIARKGIVVDWTSSTTASLYTALLE
AEGTVPRCVQKDPLRDWERVWKALQNRLHSNWDRMISWHVAHNSLLTNLKLSGWRNFHPDSACPRQGCSLDESVPHTFWE
CPVVNGLWDWLGGLIRRHILPGFQVTKSFALFGTVPPTTPKKTRLVLEAASAIVRSLIWRTRGDSKFQRSHVTGPDLVDK
LKRMLKDRLLFEFQRLGPAGFYSTWAEGFSWVSIDLTQCYVHFWWSSRTDLPILGRSET
>Tx1-10_AMi_gag#LINE/L1-Tx1 233-1167 Fragment, via tfasty with KenoFr1_gag, 1 frameshift and 1 stopcodon. [Crocodylidae]
MKREDFSWMILRETLHAKEDLVYIWKCESPPDWEVGFRSTGARQDFWQQLGGVADDxRTLSPNRPGRQKRVRIQLCTTEG
GEQDLRFWLSRNCEAVGAIEKEKDGEDIWTGAWFAGVILKQDPEKAGAMIHLLASLILGCHKGLISYRGQAKLCRQCGEE
GHLRKDCKIELCAVCNQTGHSSQSCTKEKHCNLCRKEGHLFRRCPGAQAYAAREAEEEEVPSMAPVLEPQDAAGPESENK
MVAGGPESGEGEGEEGTPDPGPTPVDQAVKETCKLLEQLSKDCVPSPAPTPAPAPAEKLGNGGGVRKRVKWR
>Tx1-10B_Crp_pol#LINE/L1-Tx1 3-2115 via tfasty with Tx1-6_AMi_pol, 5 frameshifts and 3 stopcodons. [Crocodylidae]
GGFKNGKTPGSDGLPKEFYVTFWDLVGPDLLELFRECLQEGRLGAGMDRGLMTLLHKKGPREELKNWRPITLLNFDYKLL
AKVLAERFKSVLGSIIHEDQSCVVPGCQIHGALLQLRDALQLERDRGQKVAVLNLDLEKAYDRVSHWFLFETLKxMGVPP
TFTGWIRTLYTDVSSEVLVNGFLSARIAIESGVRQGCPLSPILFICAIEPLAQRIRQDPGMHGVQIPGGSKEEAKVLAYM
DDLNILCRNKCSVERALWHTRVYEVAAGAKLNMSKSTCLAMGELRDLESLGVSVPHEGVKILGVEFDPELSGRRAWEKEA
KVKQRLGLWHARHLSMAGGMALMKVVLLPVLLYTALVFPPPKRITHRIQRAMCIFFWGSRREKVARKTLYKKKQAGGRGM
PDIALFLWAWYTSQICKLATGTETKTACLVRYFAGHLLRRWGVYAPTNGRPWSTAGSTGSxTSSGASTGYRRKARDHANH
RKIQKAVRDRDRLSTVELLPGDDCQAVWDRIFHKDLCKDHRDLNWLIAHxALPVRAWRHREGRGTDPRCPRESCQGAEET
IDHLLWLCPCAKEVWKRVSRLRKEVTGVRRMTREAALYGHLTKHQGSPTARFDQFVSCVRSALWKGRNLLMYRHTELEEA
DCVKMFLSELQSYYQKSVGEDGEDAANSTWHRLFKVPPGRGSGQGNEEDRNATGDSDDSSSQQKQQ
>Tx1-10_CQ_gag#LINE/L1-Tx1 156-1481  [Culex quinquefasciatus]
MAESDLKTNSLKIRFAGNCREPTEPEIFDFMRGKMKLKADHLLSMYKDKLDASVIVKFKNEEEFKATLARLPGTMEFAYN
KYESTQVRLSPANAVVKYVRLFNLPPEVDDREIGTALSKYGRIQRLIREKYGEETGFPIWTSVRGAYIELKEGTEIPASL
HVRNIRARVFYEGLVNKCFLCGATDHIKAECPERKTVNTRLDASRGSYSAAVAGGAARWFKQKMAEPTLSKEPEAXMTNL
NALFPQTALMKPQQSMVEVKEKAPPAGPSSGKQIAAAKETDDLWSQALAAVADQLQQPQQENKQDGDGWRVVPPKKEKNK
KNPKKVRSSSAGSSGASGSVDPKFLRPRTPRPTAISDAQRNRDRSRSAPKNGDSKKPKIIVTAETNEEAKQPSSGEMDVD
GVDEMKVAGSGGGQGAGGEQGTGGEQGCGGGSFGRRFTVXW
>Tx1-5_FR_pol#LINE/L1-Tx1 477-4413 via tfasty with KibiDr2_pol, 1 frameshift. [Takifugu rubripes]
MCCITFLFFAAPSTASPLQASMNKLRVASLNINGGRDPQKRALVADMVAQKKLDILLLQETHSDGDNEVDWGLWWRGLSR
LSHGTNLSAGVATLFSPRLDVRVTSTTEIAAGRALAVRAEVQGFVFCLINIYAPSQGSDRLDLFQKVSSFVEQCGQDECV
VMGGDWNCTTDVTLDRIGQEPHLQSAAVLSRLGAELGMVDVWRVKHPTIRQYTWVKVVDGVISAARLDRFYLSQGFSNRL
VNSHIYPVGFTDHHLATFDFLISQTHKCXSYWHFNVKLLRDXEFXRXFEXFWGTXRGRKGDFECLGQXWEVGKAHIRVFC
XQYSSHSTTRVKHTIEHLEREIRDLEGSFSTHTSTEGHTLRQKRQELSSFLQERVKGALVRSRFTSIKEMDAPTSFFFNL
ERSVSRAKQMLCLRLPDGTMTADQGEMRRHAVDFYGALYRAEDCSREDELLQGLPRLSQRDRSTLDADITLDELTAAVGQ
MASGRAPGLDGLPADFYKHFWRCLGADLWEVLQECAHTGRLPTSCQTAVLSLIPKKGDLALLKNWRPVALLCTDYKLLSK
VLANRLKNHLDLLVHRDQSYCVPDRSIMDNLFLMRDLFHLCKLYDIDVGVISLDQEKAFDRVDHKFLFSTLRAFGFGDVF
LSLLSLLYRDACCLVKVGGGLSCPVSVQRGIRQGCPISGQLYSLAIEPLLNNLRTRLSGLLLPGLPERPQLVVSAYADDI
NVFVRDQGDVDNLIDSLDLYQEASSAKVNWEKSEALQVGPWAGRDRPRLPGNLSWGRQGLKVLGVFLGTENFEKKNWEGA
VEQVCTRLSKWKWLLPQLSYRGRVLIVNNLVASTLWHRLTVLPSPAGLIEGVQKMIVDFFWSGQHWLRSAVLYLPVQEGG
QGLVDIASRVTAFRLQAAQRLLYSFGVPWTDMACLLLRKAGRLGYDKHLFLLQPQSVDLTGLTPFYQSVLKAWQVLSFKH
KAVTIPGMWIFEEPLFGNSIITSRVLSSATLRSRLRDAGVVKLGHLLKTSVPDLSDRLNMRSSRLLLQLVGEVCASLPEA
LRVFVLDPSVSELWDDKCEYVFPSLAVCPAVGQWQPEEDDLLSLKSSVSVDFEGVGRKDLYILAVKVRNLRPLEGLKASG
WTSFFGAGSSPGGCWRSLYKPPVDKRTGDLQWRIVHGAIATNRYLVHLDPSTGDGCPFCSQSETIYHLFVQCPRLEGLFG
QLQRWFLGLGEGFSFRTFIFGPHYRARRKAVHQLVNVLSGTAKLAIWKTRKNRVRGQGSEDVVAMMTGLLAARLRVEFNF
YKLTGQISTFGDIWGVRDVLXSVRENCLILNF
>Tx1-2_NV_gag#LINE/L1-Tx1 177-1142 [Nematostella vectensis]
MAADRRARSLVFKTQGSPALGDIKQALIKEIGEGKINVIQELKVGEFLVELKEEPLVERLIEEGFDIESQHVACHPPRGY
YTSVSIMGLRAYVDDGKVIETLRKHGEIKSDVIRLKYKVGHELEGLENGNRLVKMVLNNASIPYSLKIDDEWCRIIHSNQ
QLYCMECSDFGHTRRKCPNIECRKCKERGHISFDCPKHDETTNTNEQKAPKGNTSTDEANTSAGENTEYAQNMNTEEDSE
LGTQNTPTLFTPTDEDETQDDEMGEESNATGQKRTHDTTTTDSDQEYTVVSHRRKKTSQGGIKPTQAAKNGKTNQKITNV
S
>Tx1-1_ADi_gag#LINE/L1-Tx1 111-1085  [Acropora digitifera]
MSKRNQRSSSSSSTQSRPSPKRNKLLGATAEGNTESCSMDKTPDDRPSLERIMEKLSXLDNRIEEHFGGLKSDISILRHE
LKEEIEGVKSTLTEVEKSLESAWNVIADLQAESKSHADFKKTYQSSLDNVKSELAMASSKNAKLETEIDALKVRFLEEQE
KVIALENYSRRENLRFMNVPEQEGENCANFIYDIIENGLNMDVENLQFHAIHRVGKRRSSDETSKAYPRPIIARFLCRED
RDSVLKAKGRLRNSSQYKNVYITQDYAKAIQMERKVLIKAMFLARKKGMKAKVVDRNLVVNNNVYNVDNIPDNLKESSTL
NSNSS
>Tx1-2_NV_pol#LINE/L1-Tx1 1132-5061 [Nematostella vectensis]
MYPKRTVTFFILILAITMPSLVSINSHGLRSQDRRATTFSSLRRNRYDIILLQETHWTDEIQDDILREWNGDIYFSNGTN
SARGVAILLNPRLDYNLTQTKHDTTGRVINITIELEDQTLCITNIYAPRTDTERKQFYLNLDPYLATKNYNIIGGDFNCI
TNTRLDKLGGNPDARQTANTELYTIAAKHDLTDIWRDRNPDTRGFTWTGRHPTDNTIIRTRIDKFMVNKAMTHVITNTEI
KPYAHSDHDSITMTLDFGQQKRGPGYWHFNNSLLTDALLDAEIQHFWTYWLTRKNDYDNPLIWWDKAKQHFKRISIKHST
ARRKTQRNERSQLERNLITLQQKAATGTEQDIENYLLARQKLKRFDLDDLEALKIRTKLQATEEGEKSTRYFYSLEKRRQ
ADQTIKILTKDNLDTATEPLDIITETYNFYKELYTADERDERAQDEIFNTEIPTLPNDARESCEGLITENELKTTLLTME
NNKSPGIDGLTTNFYKHYWYLIGPEITKIYNYAFEHGTLTVTQRRGIITLLFKKGDRTKLKNWRPITLLTTDYKILTKAL
ANRLKTVLPMIIRPDQTASIPGRTINDNTRLIIDAITYANETNKPLALITIDQLKAFDRVSHSFLFETLEKFGFGPQFLK
WIRLIYKSVTSSVKSNSWLSAFINLERGLRQGCALSMPLYVLTAEIMAIHIRSNTNIHGLRPPGASNEVKLSQYADDTTI
LLTDDNSITETFKTLELYERASGAKINITKCKGLWSGAFAHRTDQLHDFDWYNDYIPEKVLGLYIGNADWTQRNIEHKIQ
KLNNTIDAWQHRDLSYKGKALVINALLTSTLWYHATNITLPDWAIHDIERAIYRFFWSDKHPLVNRDVLALPLSEGGFNI
PRLKTKIQALRINTVKRLLAPGTAHWKHFTAHFLRISDMKLGVRTLALDYTLQQINRDIPSFHKELLTAWHGYQPNTIRT
CTPQTLTDILNEPILRNPLIQANSKPIFHAKWASAGLIQLKDICYEVIPGFLPPTAIHEILTEGDEYGPRTLLQTTREIT
QILDALPPRWKQIIIRPPRIATTQRTMQPCFNVQPTIPGNPPIELNNMKTRHFYKTLRRSKETEIPALTYWKQLLRPEPT
FNASYWKTLYSPLTNNKQGDTNWKLTHRVLPTAQSLHRMTVYNTDRCHRCGMTEHIEHLLIHCPEVTDLWTRIQLYTDKM
TDNRLKLTNKIILLGFTPDQQDDYSKTTTDLINWTLTTARCAIHKSAVDYRVRGITTPPWAIFASVVREHLTHAQKTMKI
RHETENFQLTYCIGEALASYSNGKITFHI
>Tx1-3_XT_gag#LINE/L1-Tx1 3-713 Fragment. [Xenopus (silurana) tropicalis]
VQLSKxSTVVITILLYSESVDLSDVLFWLKRHCQALEEPQRLSDDEDYWIGGWKIKVRVLQDGGRMQYFFIGSDKGVCFY
PGQPRTCYKCGSNRHLAYSCEKIRCSQCNSMGHTKKECPKDVVCAVCSAVGHYFSNCPKASHRVGQERELDNLMNEALNE
FLQTEPDGGRDLAPNETVSQAISEADKADDSVMEGAIKPGIASYTSRGELPGGEEEKEQTKEKDDQCPGEKEELRR
>Tx1-3_FR_pol#LINE/L1-Tx1 1370-5236 via tfasty with KoshiTn1_pol, 2 frameshifts. [Takifugu rubripes]
MNTFKMGTLNVNGARDARKRALVFDTAKRKRIDVLFLQETHSDCGIEADWEKEWEGQVLLSHNTTLSGGVGLLFSRGFTP
SSLEVEHVVRGRCLMVKARLQNHSLVFINIYAPTNGTERKSFLEKVGTVLNGCGDEFLFLGGDFNCTESFLDRNHAEPHP
ASQHCLRQLAYSHGLVDVWRRMHADNRQYTWSRLSEGRISSARLDRFYCFRHHFSVFRSCSITPVGFTDHSLVLGEVAVK
NILPKSAYWHFNSSLAQDNSFRDVLRHFWLGFRERKSDFTCLRQWWDRGKVEIQLLCQQYTLNATQDTRRSIKDLEMEIV
ELEAIGSSTGDRGCIETLQSKKMALASLLDSQVQGALVRSRIQDLTEMDAPSSFFFGLEKKRGQNLIIHSLFSSTGQELV
EPGQIRQRAVEFFSSLYESEYRRDDGLFDEFCGDLPRVSEEANSRLDRPLQLDELHAALLSMKGRKAPGVDGLTVEFFKA
FWDIVAHDMLEVFNESLASGSLPLSCRRAVVTLLPKKGNLQEIKNWRPVSLLCVDYRILSKTLASRLREAMEQVIHRDQT
YCVPGRSIVDNVHLIRDVLEVSRSLDVDTGLISLDQEKAFDRVEHQFLWKVMERFGFSPGFIAMIRVLYCDIASMLKFNG
SLCAPFRVRRGVRQGCALSGMLYALSLEPLLSRVRANVDGLFLPSFYRKIVLSAYADDLIVMVRSQRDVDVLSNLTVLFN
RLSAARVNWQKSEALAVGRWTNGLPVLPQDLAWRRDGLKYLGVFIGDEETEKKNWLDTLEKVDGKIQKWKWLLPRMSYRG
RTLVLNNLVASVLWHRLSCMEPPSGLLAQLQTRVLAFFWDGMHWVQQGVLYLPREEGGQGLIHLASRTAAFRIQFVQRFL
TGPADLMWRDVARCVFRRVSNLGLDDALFLTDFKFAKLNGLPPFYQSVVKAWALFKVEKRTSSESLYWLLREPTVHGARL
DVSAEAPPRLTAALWRTRTLLLQHVVAVAGPDLTGAEAVGSLLGIRSTQAAEGVLRLWRNRLSTRERRILEDYGQGTEPD
SEDPFPEIRLVAHLGNLDGPLLRPAKTFSLAAVDKKTLYNDCVRVLNRRGLSNRSTSVWADRLGGDGARPCWRVLYKPPL
KKRTGDLHGAVALNALLSRMNTAVSDQCPFCSGRETVFHAYSECERLTVLFNVMKGVFNGFNETFSIRAFIFGAGYNKTA
RNKWQLLNFICGEAKMAIYISRKNKIAKSGDCEAASVWRCNVRCRLRWEFGFYKMINDLGKFQDIWCHKNVLCTVTEDRL
LFAQPLVG
>Tx1-11_CQ_pol#LINE/L1-Tx1 3-1280 Fragment [Culex quinquefasciatus]
LYENIFGCLIANNFVKVVAYADDLNILVRNNHEFDTVLQLVSYFSIYSKIKLNFAKSQYLRFNGCLSGPHQIKEVESLNV
LGVLICQNFNKLVEINYDSYLNKLKYTLSLHQKRILNLFQKAWLLNTYVLSKIWYICQIFPPNNKHLAAIKSICGQFIWQ
GFIFKVPRNELYLPVIKGGLALTDVESKAKSLFIKNILYSNADGNAPLDNFMLGQINNSTLTRNMREWIVKADELKLESH
LNSSKKIYDFFIHSLNIKCKTMEDMPNLMWSNLLNNLDSNFLNSKCKTVLFCIFKDIVLNKKKLHLYGIRGTDSKFCENC
GLVESVSHLVKYCQTSEEIWRWLKNILNKRLKILVKDPDELLSLSIGDRDFKYKAALWLTVQTIVYNLEKRGFGDLNEFK
QGIRIVRFNNKAIFERHFKHFLNIF
>CR1-4_HM_pol#LINE/L2 572-3694 CR1-4_HM_gag (1-569) incomplete, broken, and very similar to CR1-18_HM_gag  [Hydra magnipapillata]
IILYSIYFVSITFRVVMEDIKFHDLSFKAFQTNKNILLENNSDPDVNFFNTDEIIKNICPSYYNSDISNVTANLDINAFS
ILHLNIRSFRKNFDKFKDFLFGLEINFKIICLTETWCRDKQIEKDSNYQLKNYTVIHQLRNSETIGGGVCIFIHNSLNFK
PLTEFSVISNDCESLTIEILNKVTKNVIIHVVYRPPSGNNKFFEKHFKKLIKSKVLCDKRVFFVGDFNYNVLDYDTNKNV
KNFMNIIFQNGFIPTINKPTRITRNSATSIDQIIINEYTKNKIKTGIIISDISDHFPIFIIAHKSVEHTPHKKILITNRV
YNDISMELFNNSLFSENWDDILQIQTAETAYNSFLRIFKDHYDKAFPVVTKIIKTKTFINPWITPGIIKSSKKKQRLYEV
FLKKRTYVNELRYKKYKSHFESIIKLSKKLYYSNKIIKFKGDTQKTWQVIKEVIGKKTIMLNGLPKKLNYNHQDITKESL
IAKTFNDVFVNAGLNLASKLKHSDFNKEKYLTPSKSIMENAELTEKELLDAVLSLKLNKSQGVDNISSNVIIKCIFYIKK
ILLHIFNLSFKQGIFPKKLKIARVIPVFKSGDNTNISNYRPISILPCFSKILERIMYNKLYSYLEKNNILYNKQFGFKTG
HSTDHAILHLVQIIFQAFDKNKFTLGVFIDLSKAFDTVDHSILIKKLENYGIKNINIAWFKSYLSNRKQYISFGNKKTNN
MTITCGVPQGSILGPLLFLIYINDLSKASNILDSILFADDTNLFYSHSDITALFKTVNIELLKLTEWLNMNKLSINLTKT
KYTIFHRLHKKEKIPLELPKLIIGDYIVKRECSMKFLGVILDENINWKDHINMIENKISKNIGLLYKAKPFLDQSCLKYI
YYSFIHSYLNYANIAWCSTNKTKIKKLFSKQKHAIRLLSNAHRLSHSRPLFNNLKILNVYQINIYHLLIFMYKINNNSIP
NIFKPLFNKIQHKYVTKYSNNNFVQPKTIYDSTKFSITVRGPNAWNKIISNDIKTLKTLDQFKQKLKLLLLNNEQTDNYF
>CR1-3_Lme#LINE/L2 205-3147 [Latimeria menadoensis]
RGLYWRVRPFNRGQFLIPIKLRALGMSPSLTRLDNGDKVTRAVLFNARSICNKTSMIYDLLDDGVDLACITETWLDECAA
PILAAAIPQGFSVIHCPRLHQRGGGVAICLRSSFKCTRTLWKDTSSFEHVIATCEAGVNLRILLIYRPPWWNAEFLNEFS
ELISWLVLESSNLIVLGDFNTRFDDSSDTLASELFHLMQAFGFTQSVCSATHESGHMLDLVFSKGISISDCTVNPIAWSD
HYLVHFDFGAAPPPQKILRSYSFRPKHLLDPDIFQEMFFSSESLFSECKGVDFLVDSYNSVLSTNIDLLAPLRTRLECPS
HRPPWFNGDLRWMKASGCRLERRWRVSGLVEDRFRFRQWLSSYQKSIRNAKSVFFASVIDSEKNRPTALFRVVNQLLNPS
CLHPSDTSVSQSCDSFLSYFSNKVDLIRSDIISDHSIFGDENFGRDTSNHAILWDRFSSVSDALIEQVLRGLKATTCVFD
PCPSWLIKECSRDWVPLFTRIVNASLEEGYLPSALKRAAVCPLLKQASLDPGDLGNYRPISNLPFLGKVIEKVVAGFLRE
HLDQFDFYDRFQSGFRPGHSTESALVKVVSDLLTSLDRGLVAFLVQLDLSSAFDTIDHGILLHHLEHLLGISGSVLSWFR
SFLEGRSQVVQFGSSFSAPAEISCGVPQGSILSPMLFAIYLLPLGAIAERYGVGFHCYADDVQLYLAFPANSPGAASVLE
KCLNEIRSWMAGNWLRLNPKKTEVLLVGRDRVCESLLGTLSPPSINGGALRLVKVTKSLGVFLDASLTLERQISSVVSSG
FFHLRNIRRLRPVLPHDSLSTLMHAFVSSRLDYCNALYAGLPLKDIHRLQLVQNSAAHVVNNVSRFDHITPMLRELHWLP
IRWRITFKVLVLVYKALNGLGPAYLRDFLTPYVPARPLRSESGNSLVVPRFRSKLGERSFAFQAAISWNAIPAGLKSSPS
LSIFKSHLKTYLFESAFNTV
>CR1-4_NVi_pol#LINE/L2 1418-4309 via tfasty with CR1-11_SP_pol, 2 frameshifts and 3 stopcodons. [Nasonia vitripennis]
MDQDINIEEVGKAECEVENIRELNRKIMKIVKKKNLILCVNIRSLNANFEKLETFVESMSKKPWCIICTIICTETWIVQH
PHFYQLHGYKLCYNESKINRADGVLVYIKNNIYEKTKVEVIDKLSVVSSDLKLQSGESLRVSAMYRCHDVPKTEFLNSVK
KFLSKHIRTKNHCIIGDFNIDIIESNVQNNNIGAISISQEFLNNFFEQEFIPYYRGVTRPSLDNESGSCIDNCFAKTRDV
NIESYKLCTPFNDHYPLVISIDQLKVQNEQEKIENCINYRKLKEYAKKIEWNSCLHLQDPNLALDELIKMIHSCVGKATC
NKKTKNKQLPRKKWITKAILVSCKNKENLYNIWKKILQIxLxSMNIKIMKKFxNKTIKDAKYKFENNEIRRSGDNPRQLW
SIINSKMGKSNKQMKSPDCIVVNNQKIVNKTNIANEMNDYFSQVGIDLSNQINNKCDDQIRLPARNSESIFIQPTNVCEI
HRVISEMKKKAGGVDNINASTIKCIAMFLAKPLEHIFNISIQQSIWPNALKRADIVPIHKSGDSTCIANYRPISLISNIA
KIFEKIIYNRLFNFIMKHNIISERQFGFVRGRGATDALDCLADIIYKSLDKSKPIITTFLDLAKAFDTVDHRILLDKLER
YGIRGCALKLLTSYLSGRKQCVKINNFKSEYKDISIGVPQGTILGPLFFILYVNDLLIDMLKDSIMSYADDTVIISSDDS
WSAAQDKMNFYLSKVAKWLMLNKLSLNVNKTVYITYGNYCDSVPEDINIKIGGNFINRVESHKYLGLHFDYNMKWNIHID
SIVKRTRYLIFVFAKIKSIMDRKTLMMIYHAFFQGLVNYGIIAWGGHITIVCNSIQGVQKKLLKIINRNHFETQNSPLTV
RQLFQIEAITYHYGKLRDIYSKNTKTTRKKSISLPKINKSISKKSSYYMAVKIFNLLSNDLKELTVRKVTIKNKLKDFIR
NLIV
>CR1-6_HM_pol#LINE/L2 487-3544 via tfasty with CR1-18_HM_pol, 1 frameshift. CR1-6_HM_gag fragmentary and 85% similar to CR1-24_HM_gag  [Hydra magnipapillata]
MEENVIFKSSNENDIIGDNDTDSNYFNHKMLESQYYSVSESSQYLGQTKNTFSILNINIRSLNKNFENLKILLDEIKHDF
KIICLTETWCKCGETNYEFELVNYTSIHQPREVNAGGGVSIFIHNSVNYILRNDLCVNETDYESLCVELVNNKEKNIIIN
TTYRPPSGNLKKFKTHLKTFLNKITNSRKHIYLVGDFNINLINYASNNNAKNFINTLLQYNFIPTINKSTRITNRSSTLL
DNIITNNFHNNPLYTGIIQTDLSDHFPTFLATNNILINNISTKSTIFRRQINENSLKQFKNCLKNCVDWNLILQSNEANN
AYDLFLDQFCEQYEIAFPEIKKVINTKSLQNPWMSKGLLKSSKKKEKLYEKYLKKKTYKNEITYKNYKNIFEKTKKRSKK
LFYDQLLKKTNGNTKKTWNLIKDIIGKNKRKKNNLPKNLLIDGELVYDKSIIAEELNNYFLNIGPNLAAKIPTNSTPFDS
YLKTYDKLMDETNLKPSELRTAFSSLKSKKSEGFDKISVDVVKSVFDIIEPSLFHVFDLSLKSGIVPDKLKIARITPIFK
SGDKSNILNYRPISVLPCFSKLLERIMYNRLYNYLTENNMLYCKQFGFKKKHSTEHAVVELFNQISNAFNNDCFTLGVFV
DLSKAFDTVNHDILIKKLENYGVKNKNLLWFEDYPTNRKQFLYYNQNNTIKHSITCGVPQGSILGPLLFILYINDLYLAS
NLLNLILFADDSNLFYSHRDIKALFKIVNEELCKVNEWFISNKLSLNVEKTKFMLFHKPNKSENIPLKLPDLIINKTYIK
RESNINFLGVILDENLSWNSHINSIEKKISKNIAMMYKAKPFLNIASLKKLYFSFIHSYLSYCNIAWASTNYTKLKKLYS
KQKHACRIVFGANRNVPCEPLLSELGALNVYKLNIHQVLLFMFKTKNELSPKIFQSYFNEINHKYPTKFSDNNFVVPKYN
LKLTSYSIQYRGPYLWKKFPEIVNKKKTLRDISLEQFKNESKRLLLFMDLNKFDFKCFF
>CR1-5_NVi_gag#LINE/L2 277-1509 [Nasonia vitripennis]
MLSDVAKKTIALIKMKTSEEIREQLLKELHNKTAEKHNTTIMDEENEMENLVAENTLLKQLVAELQDKNQLQKEIIEMQK
QKSTESQTNIKSYAEVIRDIKPKPKRVPSIMIKANDPNQTNTMELLTKCLVTEKNVQTKYIRKKNESEIEVSCMNSKSLE
TLENVLTSKLKNCQVKVEQQGNPKIKIVGIDNATNMDELDIESDINTRNFKNFNSSCKVLHMYTNKRNKTSTVLMECSPD
IYKSIRENNNKVFVGHQCCKAYDLINITPCYNCGRYGHSASKCRNDPACIKCSDKHNVSVCNNNKIECVNCIFNNNKFKT
SLPTDRLKCSILKKKIKKYINSIDYPIAPVLPAWDETSAIKQIHTIQTNRLLYQRSVAPGKNVGKFQRATQLQGTSQQNY
PANTAAEDIQ
>CR1-3_DR_gag#LINE/L2 92-1804 [Danio rerio]
AYQHSAQTKQLEDQHRIYKLSGVQLYFYLEELSSKQSSRYQLLSFLRRENTAVKMALDHIDLESHCCTNCHKLLQKIAVL
ETKLLAIQPELPNYTGPVHRGASQHSAGKPYKSTPATVLRTEKQIETVENQRELWHKQGARPKGTRGVRSQRSYAAALAF
STPNTARTQIQLQNRYEVLSNMGEESPNAVRQRSHDSAINSAWNRGSRPTRQRHSAPIATEIRTLIVGDSIIKNFRSRST
MTYCFPHATVSDVNKELENILRKHETAKRIIIHVGKNDIRKEQSELLKRDFCKLLETVERLKIQPFISGPLPARGTNMFS
RLLGLNAWLQKTCNKKGLNFIDNFNLFWNQRQLFTSDGLHPNKLGAKVLKDNILFSLHHPSAVYATELNCTHTPSKCPDD
HRTSNQLLSGLVADESPKDRDNTTQPQQPPITDKLPSAPCTLSSTQADCDASEQHQVSALIDDPQENSQVNISQQPETPD
PQPLSPDTFSLSSCSPLLDFSKKMEELVCAGTKLSHSIAASPQLATKSQQATRPSLSPPRPTPRKGLRSLRQRQVPKNTS
SLAGELKNCH
>Tx1-14_CQ_pol#LINE/L1-Tx1 1243-4602  [Culex quinquefasciatus]
MDNRTTRSSKNHCHHHPHPLNNRSKFNFYPKMTFSKKIATINLNSIKTEVNKSLLRDFVQNEDLDFIFLQEVLFEDFSFL
GAYRAFVNISEHDKGTAILVRKNQEFRNIIYDPSGRILSIVCDDINLVNVYAHSGTNKKRERDDLFRDEITPHVIKGNCS
HTVIGGDFNCVLNKRDSRSTSANLCQGLKDLTTSMHLKDVANVRNGSNVEFTFHRAGSASRLDRFYVSAQFLDKVVEIRT
VPVAFSDHSAVVMKFLVDQSALCQRGRGYWKLNSSLLNKDDISCRYVVDFYQLKDREIYTRNRSTWWNTVVKPKTQFFFK
NESRIFNCRINSAKSELYAKMYDLAAERRNGADNRXQLQEVKSELMRMELDRLKFYGSRFPQTSMLEGEKXSVFHVSNQM
HKGCDGSQFQLRDGDDLITDSKRLKKKIEDFFTGTFQAEDSASLESSVEALRDVSNSLDLQQQQELVRPIDEAELKAVVA
GAAKKKSPGPDGISYEFYSVYFEMLKNDMLELFNRYLDGSLKPPKEFTAGIITLIPKVNQADNLNEFRPISMLNTDYKIF
TKILANRLHAVVGDLLGAGQVACTVNQSCSTNLIDVRTIIAKAAESKRFKGFLLSVDLEKAFDKVNHVFLWKVLEKFGVP
ERFINCIKNLYESATSRIIFNGILTSDVKIGSSVRQGCPLSMVLFVLYIEGLVRKLSANIRGVLLSGKFIRVLAYADDLV
ILIRDDAEFDLVLQIINSFAEASCIRLNRAKSAFIRINNAKGGPQQFREADEIKILGVIFTERWSAIVKRNFDKLLGDIQ
FRLSKHRTRNLNLIERTWLLNVFVLSKLWYICQVFPPDNVHIAKLRKIAGQFIWGPRQIFKTERKQLYLDYEQGGIKLVD
PEAKAKALFIKTILYGTGNNQVEDTTLLNFSKKQALSRNTREWLELAVSLKPNPMSTSVQTLYRHFINENRTTPKVEERF
PALNWNQLWENLGQSFLSSECRSQMFLLYNDLVISKEKLVKYNIGRLQDDLCEWCGVPESNEHKIKHCVKTEEIWQWLRR
TLTDRLGICGDPEDVLTRQINGRNQKEKAGLWLTMFLMSYIVKKYPKISLYCVQKGIRDSRWNNRTYFKHCFGSELNVC
>Tx1-12_AMi_pol#LINE/L1-Tx1 1494-5020 via tfasty with Tx1-6_AMi_pol, 10 frameshifts. [Crocodylidae]
LHIVSVNVRSLAGKRKWDQVIQTLEQIEADMICLQECGLPSNTSSSLFSKRWLHGAALWSGADDTRATGVAILLKGDTVR
PLQHREIVAGRLLQATMEANGTEFEVLCVYAPAKAKARYDFLENMALTMPSGWPVIIAGDFNCVISEEDRVSRAQRAGMD
RSSRLLKQLIEDHSLVDAGKEAQGPGGNFTWVDPVVQTKTRIDFVLLPKGWRAKEARSTPVCFSDHCLLTIQAEMGGQLE
RGRGVWKLNTSLLEDEKTQQSYREQYAGWRTLKGLYPNQTEWWASVKDRTKGFFQQAGKRRAFSHRRQHERLTRKLQALH
RQAAAGWDVREDMREAKAQIGAWYREEARKKIFQARAPWVEEGEEWSAYFSRLKKSKEKPMMCLRDGAGAEHWSKEGMLE
TAAAFYRELYTARRTDPGAMQQCLQGLTQALGEDEQQQLEQEWTLEEVEKTLRGFKNGKTPGSDGLPKEFYVTFWDLVGP
DLLELFRERLQEGRLGAGMDRGLVTLLHKKGPREELKNWRPITLLNFDYKLLAKVLAERFKSVLGSIIHEDQSCVVPGRQ
IHGALLQLRDVLQLERDRGQKMAVLNLDLEKAYDRVSHRFLFETLKRMGVPPTFTGWIRTLYTDVSSEVLVNGFLSERIA
IESGVRQGCPLSPILFICAIEPLAQRIRQDPGMHGVQIPGGSKEEAKVLAYMDDLNILVRNKCAVERALWHTRIYEAAAG
AKLNVSKSTCLAVGELGDLESLGVSVRPRGVKILGVEFDAELSGRRAWEKEAKVKQRLSLWHARRLSMGGRVALMKAVLL
PVLLYTALVFPPPKRVTHRIQRAVCIFFWGSRMEKVARKTLYKKKRAGGRGMPDIHLFLRARYTSQICKLATGPETKTAC
LVRYFAGHLLRRWGVYRTNQGRPWTMEHPWFYRVLNEFRSEYGLQKESPETMSNHRKIQKAVRDRLSTVELLPDDDCQAI
WDRIFHKDLRKDHRDLSWLIAHRVLPVRAWRHREGRGTRPNCPRETCQGETETIDHLLWLCPYAKGVWKKVSRLLEGVTG
VRLMTREAALYGHLTKHQGSQTTRFDQFVSCVRSALWQCRNLLVYRHAKLEETDCVKMFLSELQSYYRKSVGEDGEDAAN
STWKRDTWHRLFKDPPGGEVDRENEEDSDATGPGDSEKDNNRISSSGSDSDINSDKDSE
>Tx1-N1_CQ_gag#LINE/L1-Tx1 134-1099  [Culex quinquefasciatus]
MERTQKKNTIGFEFERDGVMPTLKEAISFLVNDLKIKDTEVHSVYLELTGKTFFVKFIDETTLKEVTLRLKETEPFKYAN
GKVVQVRVAAADGFFRYVRLFNLPPEVTDSDITKVMAKYGTVRQMVREKLPLELGFDAFSGTRGVHMEVKTEIPPSLFIG
HYKCRIFYDGLRNRCFVCRQEGHVKAACPSKASASRATGESGSSSEVQGVTEHVENLIVPLNVAVENPIVPNGTVPSIED
SNFLKEIAFGEDFEDELGKDGENESEKEWTTAKKRGRQQKDKQEESGSDSSEPGKSKVSRTPSLLKLQSEYNRKLRSGMS
K
>CR1-1_NVi_pol#LINE/L2 1556-4133 Fragment via tfasty with CR1-78_HM_pol, 3 frameshifts and 3 stopcodons. [Nasonia vitripennis]
YKRIQCRKKKTYSGIGDLNKTISNKNDIIMHLNVRSMNANFDKVKIFFESLIVKPSVVVLSETFEQVNHTFFxLIGSNYE
YESYYNDSRINRNDGVIVFVNRNLVQSTEIVQQGRIRIVNTKINLSNNSNIEISSMYRSHGIPKTEFILDLNKYLIKKRN
IKNHLVIGDFNIDILDCDHVSQEFLCNFFDKGYIPGFVGITRPPVGIAKGSCIDNIFIKTDNLNTITYKLKLSITDHYPI
FIALNKMKIVHNKPTIVLNYKKLINSAETRNWNEIITMQDPNLATDKLLYEIKQCIELSKMNQKRIKQVGRKNWITDAII
KSCETKEFLYNLWKLDINNEQLKTEYKTYSKILEKVIKDAKFRYDKKLVEKNANNPKKLWEIIKINLAKKESNETISCIK
INDIKVTEKVEIARNMNKFFCEIGQKLSNDIVQPNNAEFRLPDINANSIFLKPTNMNEVKNIINTLKIKNGGVDKIKAKS
LKVICNYIAVPLTHIFNLCIEKAIWPDALKKAEIIPIYKAGEKHNITNYRPISLISNVAKIFERIIYNRLYDFIQKNNII
SKHQFGFMKNIGSKNALNYITQILYNNVDKTIPTIVTFLDLAKAFDTVDHKLLLNKLYCIGIRGQALDLLRSYLNNRYQT
VKIDGVESDSLLISMGVPQGTILGPLLFIIYINDVLKEIPLESILSYADDTAIIATGNTWIEAQKSMNEFLTVIYKWLAV
NKLSLNVDKTVCMTFGSYCDSVPKHIDVRIQNKKIARVENYKYLGIVIDYNLKWVxHTSNIYIIKKTKYLVYIFHKLSHT
MSTETLRMIYYAFFHSIISYGIVAWGMVHIEITVIYYKVYREKFSRLSTKILLVYKIVH
>Tx1_XT_pol#LINE/L1-Tx1 2870-6781 (92% similar to Tx1_pol) [Xenopus (silurana) tropicalis]
MALSISTLNTNGCREPFRMFQVLSFLNQGRYSVSFLQETHTTPELEATWHLEWKGRVFFNHLTWTSCGVVTLFSESFQPQ
VLSAKSVIPGRVLHLRVQDSNSTYNLINIYAPTTGPERTRFFESLSTYVETIDSDEALIMGGDFNYTLDAQDRNVPQKRD
SSESALRELIARFSLVDIWREQHPDTNTFTYVRVRNGHVSQSRIDRIYISGHLMSRARCSTIRLAPFTDHNCASVIVADA
PSLAKAAYWHFNNSLLEDEGFAKSVREIWMDWRGFQDEFATLSQWWDVGKVHLKLLCQEYTKSVSRQRNAEIEALNEEVL
DLEQKLLGCEDQNLQREYLEKKETLRNIEQRQARGAYVRSRMQLLCDLDRGSRFFYALEKKKGNRKQITCLLDEDGTPLE
DPEAIRDRARSFYQNLFSPDPISPDACKELWEGLPVVSERRRERLEKPITLDELSQALSLMPHNKSPGLDGLTVEFFQFF
WDTLGPDFQRVLTEALETGEMPLSCCRAVLSLLPKKGDLRFIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSY
TVPGRTIFDNVFLVRDLLHFARRAGLSLAFLSLDQEKAFDRVDHQYLLGTLQAYGFGPHFVGYLKTLYTSAECLVKINWS
LTAPLTFGRGVRQGCPLSGQLYALAIEPFLCLLRKRLTGLVLKEPDMKVVLSAYADDVILVAQDLSDLKRAQECQEIYAA
ASSARINWSKSSGLLEGPLEVDNLPPIFQDIPWETKVIKYLGVYLSAEECPVSLNFSELEERVIIRLGKWKGLAKVLSLR
GRALVINQLVASQLWYRLVCLSPTQEFIAKIQRRLLDFLWLGKHWVSAGVSSLPLREGGQGVVCIRSQVHTFRLQQIQRY
LYADPAPQWCTLASSFYHKVRNMGYDRKLFVIEPEGFLKNLSPLPAYYQETLKTWSMVSVLREGVIQGEDILTEPLLYNP
SLKTRMLESTSIRRRLCRAQLTRVGDLLDFERIDWVQTQEVMQRMELRTTRVPNRLIKEIKDTISSGSHTFINEVLHAGE
PDSPWNAPPPAIKIAPKIRQSPQAAPSPNLSQLENFTLTRFCDMPRKLLYSLMLHTVHFLALVSRYDTIWRRVLKEGERP
QWRALYSSLVPRPTGDLSWRVLHGALSTGEYLAHFTDSPAACTFCGKGESLFHIYFSCARLQPLLALLRKLHLQFWLHFS
PHVFIFGHPVSRDNRGKDLLSNLLLALAKLAIYKSRKQHLEGGNPLSAEVMFRVLVRSRIRVEYTQAVSAGRLTEFVDQW
AINEVLCSVSPDLVSVPTTLTLHI
>SHALINE6_MT_gag#LINE/L1 92-1138  [Medicago truncatula]
MVILKKVVVGENPLSMPMNTTEIWAQVHQLPFGFMDAKVGALVGSHIGRMVRYDDENNYGLWRRFMRVRVEIALEEPLQQ
SLVIEREQGEDIKLVLKYEKLGKFCFVCGVIGHTENFCSDKFETSSASSEKKWGAYLRAENFSSGGGSKVASRWIVDGRN
KNSGGRNDEGTSINGIKSNHLMVIDGISNHEIYGRIKVDIDLQSRALKFFKFMECQRSDGTGLVRWWTEIDPTEEIESGS
KKKEVITKKKLFAPNLTKSDQINKAIAEGMTEKDEFLYENGGGAEALWKLIDLEAQQKKHKPTKFYGGGQPAGPTWGQRQ
GREGRSDNSGPTRGQPPDKARNTRTACLV
>SHALINE4_MT_gag#LINE/L1  310-1179 (fragment) [Medicago truncatula]
MAYTCLWPCVSDTISSAVAQSVPSATTQTVSGTTKSFLAALAGQNVIDDRPLPTPCIKGDALSIKICQDEYHKGXEDCKN
ALRGRLTLNKGDKPYSARDLSTKIGKLWKTTAAWKMVPLGKGYYDFHFDSADDLRKIWAAGTVNLKPGLLRFSQWTKDFK
YHSQKQTHASLWIRLVELPQEYWRERTLKEIASAVGTPIDIDGPTRNRTFGHYARILVDIDLSKRAYDEILVEREGFAFK
VEVQYERRPLFCHHCYSIGHNVTTCRWLHPQPPKDKNDRGKQIGCRGSSP
>SHALINE7_MT_pol#LINE/L1 1377-5080 via tfasty with OSLINE1-3_pol, 1 frameshift and 1 stopcodon. [Medicago truncatula]
MKCIFWNIRGLANSPSRLALKNLILQHKPDFIFISEPWILFEHFPRHWFNRLHFKLFALNNRNHLDSNLWCFCLNHLNPI
LFSTDDQQISFSIQEYNVIYCISAIYASNSYIKRRLLWQTLEINQTQYNIPWCFIGDFNTILGSHEHRGAYRPARAPMND
FLAWSDTNNLFHIPTRGVQFTWSNGRRGRRFTERRLDRAICNQEWLDLCSSLYVSTLTKLKSDHFPLLMEFETVTTPFAS
QFKFLKMWSLHPDCRDLIQQSWNTNVVGCPMFILNQKLKYLKHKLKIWNKNVFGDVNILVKEVxAKVNFIQAQIDINGAS
DALLDQQKNAQIALEYALEKEEAFWREKSKISWHSQGDRNTKYFHRLAKIKNTSKLITSILDGENMITEPDQISNHITNH
FQNIFSTNFSVQDLQVDDLIDGVIPNLITDDMNQLLTMLPTHQEIHKAVWSLNKDSAPGPDGFGAIFYQTYWDIVKKDVI
NAVLEFFTKDWILPNFNSNTIVLIPKVHDALSVTQYRPIAIANFKFKIISKILADRLAPIMKNIISTQQRGFIQGRNIRD
CICVASEAINQLHNKSFAGNLAFKVDISKAFDTLEWKFLLKVLSSFGFNDKFCSWINTILNSATLSIYVNGKLNGYFNCK
RGVRQGDPLSPLLFCIAEDVLSRNISKLVDQGKLELIKGTRSVKVPSHSLYADDIMIFCKGKLSSINALMDLFNSYALAS
GQVINPSKSTVYYGSISNARLEQITNLIGFNKGSLPFSYLGVPIFKGKPKKSHLQPIADKIKSKLSAWKASLLSIAGRVT
LVKAVIQSMMMHTISMYSWPNSLLKDVEAWIRNFIWSGDVSKRKLVTVSWKKVCKPFSEGGLGLRSLYTLNEATNLKMCW
DLKNSSEDWAILLRSKVLRGRKVISHHIFSSIWSSVKSEINNINDNCSWIIGNGENINFWLDTWVEKSIASFLNFPDIVH
STLTTRVSDYIHNSLWHIPQSILDSYPILSQLVMQITLPRDPKDDKLVWKTSSTGDLSLKEAFLFKYGTGQNISWAKDIW
SPDIPPSKSLMTWRLMHNKLPTDDNLALRGCNLPSMCSSCQAYEETSFHLFFECPFASKMWSWLASLLNMPLIFNSPMDI
WTILENSWTPQCKVVIQACIINFLNIIWFRRNNIRFQDKTVDWRTAINLIISKVSLSGNLTTKTAAANMLEFTILKACKV
NIKPPRASMIKEVIWAPPMHSWVKVNTDGASIKNP
>SHALINE15_MT_gag#LINE/L1 1196-2485  [Medicago truncatula]
RRKGGRKWLLGKEVSLFVVCVASEVVREYLPYHDDVVWANKCLLAKVKDGICFSGIQQSFLDAGFLDFNLISLGGDNVVL
SPGLDGDVTELFSSAAAFLGNFLCDCRPWSKDSNVQYERGAWIRCYGVPLHAWNDNFFLELASTRGRLLKIDEITVNKGR
LEYARFLIATPELQELNFFAHFVIDGRKYPIRFIEDLEFGLAVDACLSEFEDDNKSQCSVPEGIPHEEPVIDALVHHIHE
DIVKYSKEGDSAAVPAICSSIQGMSENIVKKENAASSHSIHEAENTTLKNDVEVFNGTKKCAPIRRKVAPSLLGLKKLAR
LSELDRKELIRSLKKDKKSKRLFLKGKSSKTSSNFSSSKTNKVSLSAGSGNSGKSKDWENWVVLHGNAKEVEEDIIEVGK
KIGIQCNNSFQALSRSGVHGGLEGCGRGV
>SHALINE12_MT_gag#LINE/L1 77-1634 via tfasty with LINE1C_MT_gag, 1 frameshift (for the 260 AA before the frame shift LINE1C_MT_gag and SHALINE12_MT_gag are almost identical) [Medicago truncatula]
MSAMSSEFVFSAHGEQNLQHSKNPPDPIKPLTPKLSFRDKLLGSSQEIPIREKEDMIEKKLVRIELEDGNRLLPKVYLEP
KVFQELCTPWKDALVVKLLGKNLGYNTMKDRLQKTWKLQGGFEIMDNDNGFYMVKFDQAADKEKVITGGPWLIFDHCLAV
THWSPEFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASAIGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWV
NGHWYKVQYEGLHLICTNCGCYGHLGRNCTTTQPPLTNTSLPTSQPQPATEKTTNLTTTSKPPFKRNQFRISQNGNTVFN
AIKNLSPNNGEVISNNEGNQELHGDWLLVTRRKKTTNNTTLNPSKTVTHKTNXYYALSYNPPKVKLGPSTPKFPPRPKSN
DIPRANQNKSEPKRRRSEETTTDPINFPFHGPTQNFKPNMLSHVTKTHKEISFTNYSTSPTPQSDTQIDEPIPTHEKNPN
KTTMQINNNQHPDTSNNNLLSTLENNIVTNNNTMHIKQD
>OSLINE1-3_pol#LINE/L1 2177-5833 (1 stopcodon) [Oryza sativa]
MKGLFWNIRGMGNIEKTGHLQDLIRDHKLDFVAILETVKHDFSTELLNKLSSGRNMHWCWMAARGRSGGILVGMDKDKVN
VLNEKTGKYFIRLKLLNADNKNVWDFMAVYGAAQAEQKAEFLTELAKEFYSQGSPLVVGGDFNILRKESEKNKIGGYTKx
SFIFNSIIDQANLREVQMSGRQFTWCNFQNSPTLKKLDRVFINNEWEDIYPLTTVRTLVRAMSDHNPMLMETGQNMAPQS
IFRFEQSWFLREDLTSVVEEIWNSDYRGDSMERWQKKLKFLRKKLKGWNKNWEGEYRRRKKEIMDKIEEIDILAETVGVD
INIMNNRRALDAQLRYVVREEKIKWFQRCKEKEVLEGDCNTKYYHTKANGRKRKSLIHSLVQEDGVISGQQNLLSYITSF
YKELFGHSKENNVSLNMEGVSKVKKEDIVELTKPFSLEEVKKVVFELRKNRAPGPDGFPGEFYMKFWDIIKNDLLELIND
FHKGLLSVERLNYGIVTLVPKTKDAAQIQKFRPICLLNVTFKIITKVLMNRLDRVMMYIISKNQTAFLKNRFIMEGIVIL
HELLNSLHSKKQSGILFKVDFEKAYDKVDWVFVYRMLKSKGFPDLWCDWVMKVVRGGKVAIKVNDEIGPYFNTHKGLRQG
DPLSPLLFNLEAEALTLLVQRAESSSLLEGLSVSENNKVTILQYADDTIFMIKDNMEHARNLKFILCLFEQLSGLKINFN
KSEVYCIGEAVERENVYSKIFTCKVGSFPMKYLGLPIHKKRLLNKNWKSAENKMEHKMGGWQGKLQSIGGRLILTNASLS
NVPLYMLSFYKIPQGVKERMDFFRRRIFWQEDQGIRKYHLVQWPIICSPRDQGGLGVLDLETMNTALLGKWIWNLENKEV
WWQDILRDKYLRKKPLSEVKNKMGDSHFWQGLLEIKNTFYKFCTKKLGDGKRTLFWEDNWIGGRPLNEQFSDLYNITNTK
HITVDKALQGGWDKVTFRRTLHGNRLEDWNRIKHLCANIHLQNGHSDKLWWNFNKNGSYTVKSMYRALKLQQFSCPLKKF
WYIKTPLKIRVFLWLFLKNKILTKDNLYKRGWRKGDKICQFCCREESIQHLFFECPLAKLIWNVVICALNLKPFSNKTQL
LGPWLFGFDKNTKNLMMVGITAVIWAIWKTRNRACFDYVLPKDPTEVIFLVCNLIESWTVLQKSEANRMELGVWVVRQVA
SDVYNSRYGWRPHVRRLE
>LINE1-41_ZM_pol#LINE/L1 2-2134 fragment [Zea mays]
ADVMAVMNSLHDQRFLNFDLLNRANIVLLPKHDGAENLSSFRPISLIHSVAKLFMKLLSMRLAPTMRDIISKCQTAFIKG
RSIHDNFLFVRNMARRYHRNGTPMLLVKLDISKAFDSVRWDYLLALLAHLGFPPKWRDWVASLLATCSSQVLLNGIPGQS
ITHGRGLRQGDPLSPFLFVLAIDPLQRLLHLATEAGILSRVAKARTRLRIAMYADDAIIFVKPEKRELDSFATLLHQFGE
ATGLRTNIQKSSVVPIKCAGLNLDEILAGFPASRSQFPIKYLGIPLSVERLKKVDFQYLLDKVSSKLTCWQGRNFTFAGR
LVLVKSVLSAQPVHTLTTINVPKVVLEKIDKFRKRFLWAGNENLTGGKCKVNWPTVARPLDLGGLGVLDIHRFARALRLR
WLWREWEVPEAPWAGLQTPCNDTDKLLFAAATRIAIGDGAKTSFWHCAWVNGRRPKDIAPDIFAASSDCRLSVREALTDS
TWVNRIDLHAIHTADHLKQFVELWSFAHSVSLVQNTEDRIDWIYNASGEYSAASAYRIQFMGHTCSNLKALIWKPWGPSK
CKLFAWLIIRNRVWTSDRLAARGWPHSPSCPLCKRHPETAHHIIAGCRYSRRIWDALASWLSIGPLAPATWPDSTSIKQW
WFMVGSVAVPKKGTRSLLLLVVWHIWLERNNRTFQRQERSVADLLAAIKAEARLWGVAGAKHLLALLPML
>LINE1-40_ZM_pol#LINE/L1 3244-6923 via tfasty with 8096424_Osa, 1 frameshift. [Zea mays]
MKFLSWNIRGMGQLGRINQLREFLTQEKVDIIGIQETIKQEFSVRELNWISSNCCFQWNWIPARGHSGGILLGVKEDSLE
VENWENFNFAIKATVRNKFSNYRWVVLCVYGPAQHHQSASFLQELSEICERETLPVVLGGDFNLIRNRQEKNSHNIDQSL
MNMFNEFINLYKLREIARVGPQYTWTNNQVNPVLVKLDRFLVSTEWEERFPLCFSKGLTRVGSDHCPIVLDSGENNPNKS
HYFFFENNWLLQQDFRALISQKWTDLKDRRPEGSYSMDGWHGSLVSIRRFLRGWNRQKRGDQNKIKQDLLLKLKSLDDGL
VMKDNLPQNWNERYRVEKELEHVYHMEEVYWQQRAGKNWILKGDSNSSFFHLFANGRRRKNNILQLVADSCTLVDQKDIS
NHVVDFYKQLFGPSTPCAMKLRENFWEGRSELSIEEAIHLIRPFDEEEIKQAIDLMHVDSAPGPNGFGVAFFKNFWHIIK
GDLMKMFRDFHGGNLDIQRLNYGVISLVPKIKDATSIKQYRPICLLNVDFKIFTKVLSNRLAQVAKVAVGGNQTGFIKNR
NILEGVVILHEVIHDLKLKKQRGLILKIDFEKAYDKVRWNFLAEVLKLKKFPDRWTNMVMRTVENGKVCVNINGERSKYF
KTFRGLRQGDPLSPLLFNLVADALSVLLDVGIAKGHISGVLNDVLPGGISHIQYADDTVIMIDGSKKSILNLKLILYCFE
WLSGLKINFHKSEVFVFGADDQEEKEMANMLNCSLGSFPMKYLGISISDHNINSVISEPILEKMRKRLDPWKGKHLSSGG
RLILTNSCLSSLPMYCMGFYLLPKEFHYKMNSIRSNFFWQGAEKKKCYHMAKWEMVTRPKDQGGLGILDSRLMNECLLVK
WIWKIVQGSNDTWFKLIKGKYMTKGNFFLSSDRDASQFWKGLHKVKHLFKWGAINKVRDGEGTLFWKDTWWGDVPLKLVY
PRFFDICMDKNARVVDYYEEGEWHIDLKRPLTIADFQVWDELVTKLVDQELTHGRDEVVWVLDKSKTFTTQSMYRFMTDG
GIRKDIYKNIWKSKVPLRIKVFLWQLCNRKIQAGVVLKRKGWKGSDRCALCQKQETVDHIFFQCSLAYFVWSCLRQVFGR
NNIPSSVEEMFCCRSEVKPKWTSLFRLFLLAGMVWALWRNRNKMVFEREFPCSPFVIFRDAVSFLQKWKVLLSEDDQSML
EKKVEEVQSWIFSFKSVDGGGSDIVVI
>LINE1G_MT_pol#LINE/L1 1957-5634 via tfasty with Karin_TM_pol, 2 frameshifts and 1 stopcodon.  [Medicago truncatula]
MKILSYNVRGLGSFEKRAEVRNFIHEKNPFVVCLQESKLSMVDDYILNSVWGNIGCDYSYQASVGASGGLVTVWNPLLVE
VWCTISIRHVLIIKGKVLSSDQDFIIANVYAPCDTLAKQDLWVRLSHFLIANGDVNVCVCGDFNSVRSEEERRGRNVVFR
QVDADNFNNFIDSSFLIDLPICGRLFTWIGGMVSRLDRFLVSSKWCDSWPNCIQVAYQRGLFDHVPLVLSVDDENWGPRP
LRLLKCWADYQGYADFVRDKLNSFVLDGWGGHVLKMKLKMIKNSLKVWHQQQSKNVESKIMDVKNRMSWLDSKGEESNLL
EEETQEIRELSVKLHSLSRVHTSMNWQKAMMNWVREGDANSKFFHNMMSNRQRRNSLHLIHVDGVLVEGVQNIRAAALNH
FATQFRASEGSRPGIQGLNFRKLSYAQSGSLIRPFSLDEVKQAVWDCESFKSPGPDGINLGFIKDFWNELKDDFMKFLLD
FHRNGKLTKGVNSTFIALIPKVASPQKLGDFRPISLVGCMYKVLAKVLANRLRSILSYVVSDNQSAFVRGKQILDGILIA
NEVVDEAKRxKKDLLLFKVDFEKAYDSVDLNYLNSVMLNMNFPTLWRKWIMECVGTATASVLVNGCPTDEFPIQRGLRQG
DPLSPFLFLLAAEGFDVLMKASVSSNLFNAYGIGPQSEIKISHLQFADDTIIIGEKCWLNVRTIRAVLLLLEEVSGLKVN
FNKSMLTGVNISHNWLTEAASVLNCKTGTIPFLYLGLPIGGDSRRLSFWKPVVDRIVARLSSWNNKFLSLGGRLVLLKSV
LSSLPVYFLSFFKAPAGIISSIESIFKKKIWEGCEVSKKIAWIKWDSICLPVNRGGLGVRRLGEFNLSLLGKWCWRLLID
KEGLWYRVLKARYGEVGGRIQEGGREVSGWWSMLCKVRDGVGSGVGNWFDVNVRREVGNGSSTFFWTDKWLGGVPLKIQF
SRLYDLAVHKECSVADMERWGWVEGGNGWVWRRRLLAWEEESMRECITLLDNVVLQVHIQDRWRWLLDPVHGYSVGGTYR
FLTNSEEQVANDDFIDVWHKLVPTKVSFFAWRLLQDRIPTRANLVCRLILQPNDNLCVGGCGLSETTGHLFIGCESFGSV
WVLLCHWLGFSFVPPGSIKDHYIQFTHLAGLPRSTHVFFKVIWLACVWAIWKERNNRVFNDTVIDPLHIVEKVKLNSFLW
LSSNIEPIAFGFYDWWRHPLFCMGVI
>OSLINE1-2_gag#LINE/L1 198-3341  [Oryza sativa]
MTGRPKPVHAVTPSPASPIRSKFWATPDDDDSEDDDEAPTPPPFTGSSATSSPSTEEFVNEASAAGFSRAQLVMAEQQLQ
AGKNSDQRLPEVILSTLLRRKLVGPPWRGPLPAERVSPPRTLGDCLASASRCPRRRRRDGRRCGVPRSSSSPEAGTVGSK
FVIPKSLGVSNDSDQLLRQGSRPDFPPLCGAHSSVSTAIASAGGEVRRPAPSASQSDRIRLGPGKWFRPTKGLISLFARS
GLKPRSRKLQPPSRPTATISYAAVVRRGKAMAAHGGRGFGGQGGGRGWGFAQGFHPGFDGGRGRGRDQRGRPHGHNGGGF
GGGYGGGYGGGGYGGNSHGGYGGNRNRRGWQGGRRFAPAAGHAAGQFHAGGGVPGHQAGGQAVVGQLQQQAAAGQFQPAG
FQTAGLADQQPAQAPFQAPLAGQQPTQPAAAGNQTREAGAVLFQQVSQSQKAQVAAPANGGGLGTSQVGTSALLASSQAA
PAAAPAGSTRGAIIGGSAQDPAATHLEGFMATKPEPAQAGKQKSKGKPYCFRCYTKGHTLDDCTVLLCCDLCFENHVLKN
CPNVKKTNAIAAPCGYAVEGMGFYYIPMNDNPKSNVEEHTVLVRVLDGSFTVDQLTVELDRLLPAKITWEIGLKGSDAFI
ITNFPSELREYAVNWGPMDTKTIKGKIRFEKGVENDVNRYEIDKVWVQFRGLPSELREFPIIWAIGSILGVSKAVDMRFT
KTFGRSRLKVAVLDPNRIPDYVDVVIGDFVYELQFRMEIDMPVGEPSVIDMDSTTDNDGDNDGKGEDPMEEDANKNNGTP
DDLPKDAAPENAPADQLPKHGAGAETGKLKEKTVAKSDPGKNKRPVAVLSQGISLEGSIQWQANMLGNHGSSSKPVVHKG
ETVSPLRSSKRNVSSLEQDSMEKATKLKARKNLDSTAAKGNKPLPSSFHNLDDSVILATTDSLGINLGDDVSSVLDSVHS
LKQIELQRFNDFCSSSKEEKRSCEENSSVCSEDNVDIDALNTICSEIAESLGDGGYDPLCLHTPLSQIKRRQPKGKQNKN
KSERSKT
>LINE-05_OS_pol#LINE/L1 3047-6601 [Oryza sativa]
MLQHLRILNWNVRGLNNPARREAVLEAAELARAGILCLQETKLSSIDQWIGKEIGGNRLSNFNFLPANGTRGGIAIFWDD
TIVNMANFSQGTHHLSAMAMTITDNLSFIITVVYGPSEDCDKENFLAELVAAKPPTDTPWLVMGDFNIIYEARDKNNQNL
NRRLMGRFRSTLNTLELKDIRLQNRQFTWSNEQGNPILSKLDRILSNSEGDILFSGHSLLALSTSCSDHCQLLLAPMQEP
KRKPRFRFENFWIRVEGFLGVVTQAWNEPIQEGHPTWRLSQKLRNTEAALRKWSKQKFGQSKLQFAMVQELIYRLDVALE
TRTLTAEEHQFRKDLKIRILGLAAVEKARKKQASRVKWLKEGDANTRFFHIKMNARRRKNFIHCLQQDGNTLHTHEDKAA
HLHAHFNSILGTRRQRGCTLNWEALGLSTIQDDSMDEPFTEDEIWEAIKNSPKEKAPGPDGFTGAFYKSCWHIIKKEIVD
VFASFHNLTGGNFGSINRAMITLLPKKDSPRSVNDFRPISLIHSVAKLISKTLAMRLAARLGDLVSHAQSAFIKKRCIQD
NFLYVRNMVRSLHMQRKPSLFFKLDITKAFDSVSWEYLVEMLQWRGFSQRWRNWIVLLLSTASSRILLNGIAGEPTTHRR
GLRQGDPLSPYLFILAIDPIQRLLNKATQEGLLSPLSNRAARFRISLYADDAAIFINPIRNDVNNLISILKFFGEATGLQ
VNLHKSSVVSIKCAEQNLSEVLENFNGQRGNFPITYLGLPLTPGRIKRIHLQPVMDKLQSRLAGWKGKLIQQSGRKTLVT
SVLSSIPTYFLTALKPPKQFLTDMDKIRKKFLWAGDQEISGGKCKVNWKKVCSPIKMGGLGVLDLDKFARALRLRWLWFE
WECPDKPWVGTTPPCDELDEQIFAAATKVTIGNGRKAKFWTSNWIGHQPLKYLAPALFNHSKGKQRLVQDALTNDKWIED
IRHELSMPLIREFFAVFRLIWDNETNLEEGVEDTITWRWTNTGKYTAKSAYLAQFAGREDSRAATLIWKTWAPSKCKNFA
WLVLQNRIWTSDRLQLRQWPNNYFCQLCYRNLEMAQHLFKDCPFTREIWDKIMARMNHNQPFPVHNPDESLVDWWESRTK
QQSKCQSKGMQSLHMLLSWEIWCERNRRVFKDKELQIPQLTARIMDEIHTWSACGAKNLARIAP
>SWIMMER1_gag#LINE/L1 268-1146 [Oryzias latipes]
MAEYNILLQELRAFRQENNEKLESIKEDIAKVNNRMEEAEGRIEKAEERIQTMEDVMVELMQVHVKLTDKLTDLESRERR
ENIRIYGVPETSERDSPSMSAFVETLLREGLKLEGAENINIERAHRSLGPPPPNGASPRSILVKFLSFKTKEQILRKAWQ
QKGFTWKGKQISLDNDYPPLILKKRREYAAIRRILKDKQIQFQTLFPARLKVKYADGVKIYNTSTEASEDMSERGFPVEV
IKPPESVLERYKQLNTWNRVTRGTDRTAPGPPGPSYKEKLRAFRRTGADPAVE
>L1-5_HM_gag#LINE/L1-Tx1 3-1137 based on L1-4_HM_gag (tfasty & estwise failed), 1 frameshift and 1 stopcodon   [Hydra magnipapillata]
LNIDGNHQRSYAQVTKPTISKQHLKQLNKTLLSEIQHQVNFEDVIIALEESGLDKEIEGVQLIRNDSIIEITLKNEKTKN
KLLEMGLDIKGFHHRFNNSTPTRHASQRITVSVLGLPLEYKGFIVGALEKMGYGKHIYSRSVMKETPKNKTLYYSGILTA
VMDKIKTPIPKTIEIEGHKVRIIYTGQENSLAMKNKTENNTCNTIIxESLTGAEKIIPKISLNKTIESIKTMEKEKEINI
NITEAKENIXPKNKNLNYKTEKPNNHKKFAQNEDAFEEENVNLKSNEYEDMDEVEASFPETXQNQDMEEGESCVDTQEKG
LKRKTTPQDIKIQTYKRSNKDFGIIYDGKCPETNQNNENNLDTQYQVNNNNILNHIEI
>L1-5_CQ_gag#LINE/L1-Tx1 138-911  [Culex quinquefasciatus]
MGRQNTIRIDYGDLPNKPGMPKVQKFCADKLGLKRGEVIRIQNSQTLGVTFVTVADLTLALKVCEEHGKAHELTGSDKKQ
HQVTITIEDGTVLVKLFDLSADVSNADVAKFLERYGEVRDVYEEQLGDDQEFAGAYTGIRVAKMVVRENIASWITINGEA
TKCEYYAQKATCKHCHDYLHVGVGCVQNKKLLVQKTFADAVKQPAKPQQPAMPQQPXNPQQPLNPQQPADXQQPLNPQQP
STRATAETKRREVEAKRR
>L1-7_CQ_pol#LINE/L1-Tx1 1-3129  [Culex quinquefasciatus]
NFIRTMGLDIVFLQEVYDDQLSIPGFNTITNIDHAKRGTAILLKQHIKYTHIERSLDSRILAVRIHESVTLCNVYAPSGT
QHRAEREKLFNSTIAHYLRHNAHYTLLAGDFNAVIRSRDSTGSSNFSRSLANLTQQLRFVDVWATLRRNDDGFTYITHNS
AARLDRLYVSVGMKEQLRTAEIHACSFTNHHALTVRLCLPSLGNDHGRGYWSLHPRLLDAETLDELRTKWTYWTRQRRHY
TSWLNWWQGYVKHRLKAFFRWKSTESHLASQQQHQHLYSQLSSAYDEYQCNPAALSKINKIKGQMLSLQRKHSEAFFRNN
ETRVAGESLSTYHLGERTRKRTSIDQLQTDDHRTLENQTDIQNHVVSYFRDLYSAEERLPEQDFVCNRVVPCDSESNNSS
MNEITTPEIYQAIKSSASRKAAGPDGIPKEFYLYAFDIIHRELNLIMNEALNGDFSADFVAGVVVLVKKKNTPNTVHGFR
PISLLNYDYKLLARILKSRIDRILRSHGVLSSAQKCSNSERTIFQATLAIKDKIAKLNKEKKSAKLISFDLDHAFDRVDR
SFLYTTMQDLGFKPSLIALLKRIGDLSSSRLLINGHLSESFAIERSVRQGDPLAMHLFVLFLHSLICKLEAVCSGDDDLI
AVYADDISVVVSNNSKVDELRRLFQSFESCSGAKLNTNKTFAMDIGWCNQRNRWDIPWLQTTDQMKILGIIFTNSIRRMI
TINWDKLVGKFAQLLWLQKLRLLSLHQKIAVLNTFATSKLWYVSSILTINTAHIAKITSLMGSFLWDGAALRVPIHQLAL
PIETGGLKLQLPFFKCKALLVYRHLAERQSSPFYASYLASTLNPPNLSAIPSSLPCLKTVCQEFAYLPQRLRDSTQLSSS
AVHGHLLCSAEKPKIMQQHPDLLWTRIWKNISAKELNTAEKTCLYLTVNQKISHQELLFRTNRAPSPNCEHCGFVGTLQH
KLADCSRVSGAWALLQGKLQGITTINLPYEALARPELRRIGRRTRAAILKTFACYVIFIEKVNGLVDINALDFFLQTEVH
LNC
>L1-N5_CQ_gag#LINE/L1-Tx1 81-977  [Culex quinquefasciatus]
MSSTRKNTIFVDFGVLPARPPLDSIKTFVEKSMGLNPAGFKCLQLHNTRNGILIEMADLATATKVAADNHMKHALRSGEK
NFLIPVYVDDNAVDVRVHDLPPGMPNDDIADGMAQYGEVLTITDDVWKNFFPGIPNGVRVLRMKLXKXVPSYVSIKGQLS
LATHAGQIPTCRRCGQKSHPEKTCSSAKAKKKTVNANQKNDKPTTTNTIVPAATTTTVSDPISKVTDDDGFRTVEKKRKS
VKRQLSIESKTTPQEKRTQINFDSETEMDEQTLKQISKEDSAKLRTDNFMKWCELMYMQ
>L1-55_XT_pol#LINE/L1-Tx1 2109-5483  [Xenopus (silurana) tropicalis]
MGSFNLFTINVRSIKDRTRRQNIFAFLDTQNCNVYMLQECAFPFSRSYKHLMRQWTHGPSYWSGGNSCKSAGVAILIRGS
LFTVDSVLELVCGRLLVVDGSWAGEPVRLINVYASPEKGERLELFQTLRAQLATTRAVVLGGDFNCPIEEDGRSTSNGAK
LDVTSKLLKEMVTEASLKDAVGSIGNGTVNYSWCRPDGSVRSRIDFVFTSRTIKQTRYAMVPCFFSDHRAIHFQGSLGCG
FPPGQGSWKLNCELLGREEVMQELRDAYIWWRNEKCCYDNVSDWWEFVKVQLRSFFQVKGRRQACERRRNFKRLQRNLQS
LQDLQRCGWDVRKDLEETKEGLKGHFAEESRRIIFRSKVEHLEKGEKCNSFFFRKLHSGHTPLTELRDETGTLKSGKEGV
MEVVTDYYSSLYKEKETDETSAERFLAGITNLIDPAGLSATNAPLALEELHSAAKSFRRDRTPGSDGLPAELYVALWDLI
GPDLLELYEEMAVEGKMPQSLREGMITILYKQKGERCDLKNWRPISLLNVDYKILAKVLANRLKTVIGQIVHPDQTCGIP
GRRIADSLALIRDTVHYIKDRRVHAALVSLDQEKAFDRVSHVFMNKVLRRFGLGEMFCSYVSLMYRDIFSLVLVNGWKTD
PFPVLSGVRQGCPLSPLLFVCCIELFAECIRRNPEIRGITAPGPARSQIKCSLYMDDVTVFCADQPSVRALVQTCEDFSK
ASGAKVNCGKSETLLFGDWNLASDNVPFSIKADFIKILGVWFGGEGAALKCWEERMAKVRQKIGLWSLRDLTIEGKTLVL
RNEILPVLQYMAQAWPPLATVCRAITRAVFHFIWGSKMDRVKRSVMYKAPCKGGKGVPDIPTLLRSFFVCNCIRQTITGK
EKDSVGSSMSRFFLLPLWRSLGWDKWDSSYPYNWNTPWFYLDVTKFVREHQLEGVKPDLWKPKTIHKLIRAKDKMESIPG
LPEDTAKVVWGNVSSDSLTNKHKDMSWMAIQGGLPLRTFMHARNLCRYRHCPRCILYEETSLHTFWDCQFAQVLLDALEH
ELKDCVPRNLLTHHAVLYGLFQGTHTEGAIQEAWRLMNSFKDVLWYSRNCLILRRERMTIQDCRRLIHSLLRDYNIRDSL
EEEED
>L1-2_HM_pol#LINE/L1-Tx1 1514-5353 via tfasty with Tx1-2_NV_pol, 2 frameshifts.   [Hydra magnipapillata]
MQQLKFYTSNVNGLSNGSKRKTVINNLKNRPHDVILIQETHLDNDTINLLKKDWDGDVFFSPGAVYTRGTAILLKQKCEK
PIFLGNDSKGNFNYVALKINDIKLLIINVYAPSGGGNSQKLRITFFNELINEFSNKDFNDFQIVMGGDFNVTLSEKDRYP
AMFRQECPSIKNLKTLLNLLEIEDVWRVFNPLQTEYTFAATNGVSHSRLDRFYISKKARQNIKTFFEPTILTDHYNAQVV
VLNINKNNIKSETWILNNKHLENEEFKTLIEASWNEWAHQKNNYENIKDWWEAGKEKIRLISKKFSKKLKQKQNKKEFKL
LKLLKNASQKMHVNNNMKKLYNDVKMKIEQIEKEKAEGAAIRARIQWRLEGEKCSKFFFGLEKQKLAKQYVTEISGSDGE
VKTEQKEILAEFEKFYKNLYKNKVNDKTSQEFLFSNAKVQQVTEVENKLLEKEISEFEIKQALGQMKNNKSPGSDGLTIE
FYKKFFEIIKKDLTDALNNVLFTGEMTNSQKEAIITCIFKKGNKNDIGNWRPISLTNVDYKILTKCLANRLKNILPNIIH
SNQTACVKNRTINYNLSYTRDIISIAKTSDLDACILSIDQVKAFDRVDRNFLLKSLKHFGFGRGFIFFIETIYKKIFAKI
KINGCLSEKxINILRGVRQGCPLSMILYIIQAEIFSTFVRQCDKIKGIIVEGKETKIQQYADDTNFYLTGENSILEIGKA
LKINKKATGXKINIAKCQGIWLGKNIFEDKQKFLNFNWDENSFKSLGVVFSNNGRFSYETHWKERFDKMESSLRKWQKWK
LSLKGKKTIINSLIIPQILHIAFVVPLPNKNYLDKMEKKINNFFWGSRVCRLNKTKTQQKILKGGAGVNNLTNKLKAIQL
QWISKIHSENISGPWKDAMINILNSYRDANQNIHVFKTNPTQIKQLPPFYAQLITNWHELKEKHKLPVTEIEEILNEPIF
YNKMIQKSPKKFLIPDKSHIENDIVLLADIAKTFQPGFLNHKSVNMSEKNLSEIIKALPPEWRRKILTQSQKYDFKKAPQ
YIAKKKSKYELKNLTVLTLYKLLNKPIKKLEYKYNNWKSMFDSMDNLNDNDWKHFFVNISKRNTNNKASEIRFKAAHFIL
PTNDKMFEIKVRKDQLCPQCKTKVETTAHMIYECEKVQPLIFYLLDILDQLYPLEYPHINNLKFILFGYEKRAKQRVFGN
ILLDVLLTEIFYNRMKSHFDNKVFTNKYLLKKLKAKIEKVLKNELLIIFKQNKQEIHKEEIKNIFCNGSLRLVADICNYF
>VLINE8_VV_gag#LINE/L1 3-1931 Fragment via tfasty with VLINE9_VV_gag, 2 frameshifts and 1 stopcodon. [Vitis vinifera]
VVDLERKRFCIFLPRGRRDKRGWTAMAEMIRQMEELAGRRTELQEVRAGGKATPAKSYAEAVMXTNRKGANAIKMKVXRE
EMAGNLQKLEHCLVASWKPNKKEEEDLERLGSLWASSWGLKGKLGLAKLERGRALLEFEDIREAHRVVSSGSRVMGGVHL
GLDLWNPKTGCWVEEEMXQEAWVKIFGLPISLWSPAILKKIGEECGXFVEIDERTRSMGEIQWARILVKIRGEFRPSMLE
IEVEEEVYTLALWWEIRPVVRRIFSAAEXRRRTEVRGDTYSRAEKRVGKELVDAGTEGLHLPDDGRLLQENGPGLEPGNQ
IHGPMPRDWVYSDGKVAGSXSRGPTMGLKEQEKDGGLAKIDGPLGRKLKDKSKVAGESEAGPSSSSWAAELGCTSFSxGG
RLGKGWPNCXPREGWFLGRFISRKGPIPEDPLTXWVPEEIRREQRDDGFSMTDRALEEEAKRYALHSHPKGNRVMGTSLL
LSSNSDRAPEGESFDRPGGIEEELWGDKSTWLTVYEGNVENENGSWKLGEANKNRDKVRGKEGNAGAXGSQDTENEKEEL
WEECSLAKFSQFLGFSTEGLEKEILNFLTKIRKRREKIHSKELLEKSKFERELKRLECSVNYEGGNKQKGPSQGKGNQLI
VAQ
>VLINE7_VV_pol#LINE/L1 1297-4950 [Vitis vinifera]
MKIRILSWNVRGANXCDKRKVIKALIKKNKVDLVCLQETKXQEMTRGIIRSIGVGRFLDWGTVDSRGSAGGIVVLWDNRV
LEMIELEKGECSISCHFKNCEDGFTWTFTGVYGPTKRRERESLWNELGAIHGLWNGPWCVAGDFNAILSPEERSRGGSFN
SDMRRFAXVIEELQLKDLXLFGGPFTWSGGVNNQTXSRLDRFLVNEGWDCRFSHSRQSVLPRPVSDHFPILLEGGGLRNG
PSPFRFENMWLKVEGFKDLLKAWWEGDNFNGAASFVLAEKLKVVKTKLKEWNRDVFGRVEYRKNVALDQMQFWDAKEKTS
RLTXEEMEARREAREEYKKWVLLEEVTWRQKSREVWLKEGDRNTSFFHRMANAHRRRNNMERIRINGVWKSEENGMSEGI
VNAFRTLPSNPGXWRPSLAGLQCEQLQXLDADALEVPFTEEEVHGALVGCSGDKAPGPDGFTMSFWQFAWDFVKEDVMRF
FREFHEHGKFVKRLNTTFLVLIPKKMGAEDLREFRPISLVGSLYKWLAKVLANRLKRAVGKVVSKAQGAFVEGRQILDAV
LIANEAIDSILKNNENGILCKLDIEKAYDNVDWSFLLTVMQKMGFGEKWLGWIKWCISTASFSVLINGTPKGFFQSSRGL
RQGDPLSPYLFVIAMEVFSSFLXRAVDNGYISGCQVKGRNEGGIQISHLLFADDTLVFCQASQDQLTYLSWLLMWFEAAS
GMRINLDKSELIPVGRVVDIDDLALDFGCKVGSLPSTYLGLPLGAPFKSVAMWDGVEERFRKRLTMWKRQYLSKGGRATL
IRSTLSNLPIYYMSVLRLPSSVRRRLEQIQRDFLWGGGSLERKPHLVRWKVVCLSKKKGGLGIKCLSNLNKALLSKWNWR
FANEREALWNQVIRGKYGEDRGGWRTREVREAHGVGLWKGIRMDWDLVGARISFSVGNGRRVSFWRDRWCGDAPLCDSFP
SIYALSIEKEAWVADVWDPLVQGGRGGWNPCFSRALNDWEVEEAELFLGCLHGKRVIGDVDDKVVWTETKSGIFSAKSLY
LALEADCPSSFPSSCIWKVWVQPKISFFAWEAAWGKALTLDLVQRRGWSLANRCYMCMEKEETIDHLLLHCSKTRVLWEL
LFSLFGVSWVMPCSVRETLLSWQTSSVGKKHRKVWRAAPLHIFWTVWKARNRLAFKDDDISIQRLKYSFLCSLWSEAKLF
IVECPQTLVNFIDWVGSL
>KenoDr1_pol#LINE/L1-Tx1 gi|34392578|dbj|BAC82621.1| pol-like protein [Danio rerio]
MFISLFHLLMALTISTINVRSVRSPIRAQSVLSFLKLLKSDVFLLQECALPFISNYRKWEDVWTPGPSLWSGSNQNKNDG
VAILIKNPNILVKGTTVVRDGRAFLVTLTFLGRDFNVLNIYGHTDKNERYELLEDLQPHMLGKPPLVVAGDFNCILTQKD
RKKADFKLDKTSTLLNNLVKDFKLVDCFRQVHPREEGFTWFSSDSTSASRIDYIFTRDFPPVDATLTPTFFSDHTILSCT
LSLPPGVTIGEGWWKLNCSLLEEEEVVKGYREQFSQWQTLQDFYDTRAQWWEMVKGRTKTYFKKIGKQKKNKRKKRMLGL
QKRLQRYFNLLNMGFDFNNEIKEVKKEMLVLAEENSRGVILRAKEKKIEENEKCTRYFFKKIITKGGGISKIKNDEGTIL
NTTEGGLKEVEKFYQNLYGEKIVHEDALNEVLNFLDKKVQKEKHSVLTQDFKKEDLDKALKSFKKGKSPGMDGLPLEFYQ
CFWDILAGVLLTVFNEFENFNKLPADFRLGIVSLLFKKDDKTILKNWRPITLLNTDYKFFTKILATRMSTVLEDVIHPDQ
ACAVPGRKITDSLLLIRDAICYARDRNIRLAVVNLDFEKAFDRVSHQYLLQVLEKMGFPGRFLAWVGLLYNDLVSKIIVN
GHLTKAVNICSGVRQGCPLSPLLYVVCIEPLAQLLRRDKWITGFKIPGGLIASCVLYMDDVTLLTTDLTSARRAMDLTDF
YGRASGARLNRKKSEAQLFGPWGNVVTEGLELTFKENDFKILGVKFDKEGGGGQNWNDILTKVNQKLGFWGLQKLTMEGK
ILIFKSVILPLILLVSSVFSPPRRFIRKLERAVFYFLWGSKWERLRRTELKKKPEHGGKGLPDPHLFLGSRFTALHFSYA
LTPSRENKTAAMTRFWMGSYLRTLKVLAVDLKYPVSFNLPREYDFIKKFLKKYVLETNDVTILTNHKALISLVQDRETVS
RVPGLTLCEAQQVWRNAAHPALQNGHKDLLWMVAHEILPVRAVMHSRGMARNPVCPRAGCGCPETVRHLLWECGAARDLW
ARTGPLYHQYLPAGRAQMDYHLIIHGVGQGVKDMTQQDFTSLWLTLTAIKDAIWVTRNLLVGKQVTVPLQGTKGLITTTL
QGYRTLTRGQGARGHTEEVPAATVPGRP
>L1-1_SMo_gag#LINE/L1-Tx1 221-3634 Much longer than any other gag so far.  [Selaginella moellendorffii]
MERRPAPSNSGGRAKPQPFTLGRGTRGRGLSIRLPQGGMLKGRAANSKTPITGKRTSLGSPGDSEKLGSSGTAGSSEHTI
SDQTGSRQKSHHTDSDYLAECAAMDLHEEVVQGTREMMIRAQHTHQLLKELANTPKDTLEKLVSLEQDGGAHRSSLATKE
EPPAPDTVLEPGSGRLGNQQEEDEAMDEVILPGNTGVAMHKSLEEELRRSSDGAGEQKPSRAQGPGPGTSQPASPPTQHG
SPVQQSCALNREVQEVSGFLGSGDLASGDGPREEVATSRALDLNFLTPITECMGRRVALNVGKTASGKTKGRTCPNPSKN
RSGVTTRAAAAAMRAATVVEIPIGCHAQESRADPEEEKGLETPNDQTRGHRETPEVHRTEAKEXVQGEEVSRCLTKAXSE
SQGQSKRGPLSQKFSHRCLSDLTNKVRTSLPGSPVKSVGSRLKSRTSPSHQPDREPQLSVLQQCMPHQTEEGLLQWDPRT
FAKALREATQNEVQLHQDILTAEVWHQETHPKGEDRTLGPALREALDLATEALVTPKEQEYTNSQEAQQTKVQEEVTSTW
KEQEEQEVEQQRDQDKEIPEASKKVETQKEESILGKRAKPLALLLEEQEEEMKRMGQEREREAKKNKTEKKKERKVARRK
LKTQSSSKEALAWAKEVEEFLHEEETCSEEDQEQQKGSTAKGKAQGASAGRGWEKVEDKCRTAPHQGPEDPGEQGDLGVE
QEQEGCPAQGKVVKEIPHTEASKTEPHAGESGKRAGTALGAKGMAKAVKLGEALSQVVAAREEELRHRAVIAVFRGKFPT
GRMAMDWLNATLEQGITIKNLLPHGRGCYTVVFETEEARARAEELHGLIDDSWAVSFHPWIPRFTADDQARLKGGSVPLN
VALWDIPMEMRIKEVIRELVEGSIGQIASGLDTVDAEGILGPVRLKVFVSSPAELPTEIAVLGQYVRIQVENAAPRCGXC
LQSGHSENACTTKRPKLAPGRPFELPEAVEKQLKQRPPEQAPHIRFPSAPPFSGPDSRPRMFESPIAEKDGEGFQQVLPR
TVNMAVRWIPPRRELTTTEAGDWLMYRGHTAFPEVITLGDYQTRMERAITEWTGFSEYAVRGFSWTKYRGRLTAVWTISS
EWRARPSSTVFSWKYVAP
>KenoFr1_gag#LINE/L1-Tx1 125-1384 RepBase name is L1-1_FR.  gi|39652284|dbj|BAD04855.1| gag-like protein [Takifugu rubripes]
MSANYAGLRRHRSVRFYFKDEQVKISRLDFSRKFVQNLLNFQPDDINCILTLPANKGYDVSFCSAALLREFWTRFENVKS
QFSAFAVEKLTDNAHKTVIVRMFNETVNAEDICIWLARFCTVKGQATKVRDEDGIWNCAWRVPIQQWEDPQGFQGLRHLP
QMIVLGNNRGYIHYQGQPKLCRKCGEQGHLAEACPVIVCGKCRAVGHSFEECTTGRKCNLCGATDHLFRDCPLSFANKLK
ARKKQEEKGPTENEVRTVLEGNSNLPPKPVIGGEESSEVGQREGPGPHPVEADMELGRSHQADSGVRPASTDDDSTRSLH
IVEEEQSSTSLPDAQPSSKRTASELSNSGAESASEKRGRAESEHHSPPVDQDSGSSSSSSNECSFLNVALQSTPLRKRAD
FAFRRTDSQSLPPGCRGIFR
>Copia-4_CP#LTR/Copia 60-3927 via tfasty with SHACOP4_MT, 2 frameshifts and 5 stopcodons. Copia-1_CP over 85% identical. [Carica papaya]
MTSTGTTPPPHFNGENYHVWAIKMRAHLKALSLWDVILDDSNPLPPGDTTTINxIRRHEEDKAKKPKAIACLFSAVSDRV
FSRIMNFESPKAAWEKLKEEFDGRVRNRKVKILRLKSEFALLRMQENESVKDYASKVLISLPPKFESKISALEEPADIEN
ISSAELINKLQSSEQQVNMHVRQHTEGALISTQNKGSSSTQNQGRRSEWNQTGNQNPSKQKKYSECSICSLTNHSENECW
YKGKKTVRCNFCKRLGHKERFCKQKQKQEGSRPKQEQLQANITKVSCEPSDTILVALSRLPVEDDTLWVVDSGCTSHMCK
DDGLFVSLDRIITGQVRLGNGMLETIKGKGNTAIETKEGRKLITDINFVPTISQNLLSVNQITNxGYSVGFKDNYYRIYD
PKDRLIASIQKKNQVYSLKLREVVEKASVASVTEGEIWHRRLGHFHAVGLQQLQKGGLTNDFLNITVTETVCGACQMGKL
ARNYFPSQADWRAKDKLALIHSDICGPMTENSMSGCRYFGLFIDDFSRMIWVCFLQNKSQIFGEFKKFKAIVEKKSGSVL
KCLKTDHGLEFNSSQFNDFCYENGIKRQLTAPYSPQQNGVSERKNRTIVEMARSMLADKHLPKALWAEAVNAAVFLLNML
PTKAVNQMTPAEAWSGIKPSTKYLKVFGFVCYYHISDDRRSKLEMKAELGVFLGYSTEAKAYKVLNLKTNKLMIRRNVTV
DENSYWNWEKLKVERDCVTVQEGKKSMTVSNPTQSDEQDEEDEEGEAKGKIKLKSLADIYERCSFASKEPSSVEEALQQQ
ExRLAMEEEIRMIDKNNTWSLVKLSTNKKLIGVKWVFKVKLNPDATTNKHKVRLVAKGYSQLPGINYTETFALVAKYETI
ILILAMAAQFGWSVMHLDVKSAFLNGKLNEEIYVEQPPGFIQLGKESHIYLHHKALYGLKQAPRAWYDKLNTYLLHCGFE
RSMTENTLYVNKDEDRLITAVYVDDILVIRSNKRKMEKEFEMSDLGEATYFLGMEIQQSNLGIFLSQGKYAKEILNKFNM
NHCKSVSTPLVSNLKLSKDEKGSKVEEGNYKSLIGSLLYLTAIRPDILFAVSLLSRYMASSRESHLQAAKHVLRYLKGIx
NFGAQFKARAEGGLVGYSDGDWAxSVEDARSTTGYLFKLGSGVFSWTSNKQDTLAQSTAEAEYVAAATATNQAIWLRKVF
NDLKLDKQTPTVLYVDNKSAIAIAKNPVMHERTKHINVKYHVIREAERNQEIKLIHCSTDDQLADILTKPLSKAKFEDLR
EKVGIGKKSH
>Copia-4_AT#LTR/Copia 44-4111 [Arabidopsis thaliana]
MATTTTRVEIKVFNGDRDFSLWKIRIQAQLGVLGLKDTLTDFSLTKTVPLTKSEAKQESGDGESSGTKEVPDPVKIEQSE
QAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYTQLKLYSFKMVSTMTIDQNVDEFLRIVAELGSLEI
QVDEEVQAILILNSLPASHIQLKHTLKYGNKTLTVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGG
QGKGRSRSNSKTKVPCWYCKKEGHVKKDCYSRKKKMESEGQGEAGVITEKLVFSEALSVNEQMVKDLWILDSGCTSHMTS
RRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIKILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYF
KNNKTALRGSLSNGLYVLDGSTVMSELCNAETDKVKTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGKS
KKVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKV
KCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAATAAYLINRS
PASAINHNVPEEMWLNRKPGYKHLRKFGSIAYVHQDQGKLKPRALKGFFLGYPAGTKGYKVWLLEEEKCVISRNVVFQES
VVYRDLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSEPITEGEQSSDSEEEVEYSEKTQETPKRTGLTT
YKLARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDR
KIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGD
LEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFDRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDD
MLIAGASKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKL
AAVREEDECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVFTKEKDF
TVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKI
WCDSQSAICLSKNSVYHERTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFKSALGVLKLMKWD
>Copia-4_DAn#LTR/Copia 56-4060 via tfasty with Copia2_Dmoj, 69.8% SW:1983, 2 frameshifts and 2 stopcodons. [Drosophila ananassae]
MDLAKHVTKLSGATDWPIWKRKIRDLIHYHDGALDALDGKIVKPDPLPEGASTADKKKHKEKSDFFRKANSYAKSMITTA
VTDSVYQKIMDKETAHDTWEALKNQFEATAKDQVFRICNEFFAFSWNPGNDVSTHIAKLRSLSRFKSSFKAKNETELPDL
ILVCKTLHILPKTFETFRQSxMLLTKEEEKTFDELTNQIVMFERNFRTKEMTKRKVRRLFLPQQKRSIIRIQEHLVGDCD
TCRYCKKKGHWVRNCIKWKKDGRPKPSYQNAEQGNCAEPTVTLVSVHNGVFAAEANSGDDWWIDNGATKHVVKTAKYFEH
FEKFENPSWIRAAGNETLxALGQGTIKVKTIVNEKILFLSLKNVWFVPNITKNLFSVLAAQDNNPSSRFESSATECTLKI
NDKIVLVGARKVGGTLYRAAIEPILPERNVEVNVATSETSILQLYHERWGHQDKNHIKDMLKREMGIQVKLESSFSEPCT
LGKAHRLPFGTRKPATKPGELMSGDVCGPFEDSFQKKRYLVVFKDHFTRFRYGYIVKQKSEVKDVLRHMVSHAKQQGHTI
REFLSDNGGEFDCAGVRETLQEAGITFRLTAPYTPEQNGGVEKENRTIVEMARTFKYSNPEIKFPEAIWAELVSTAVYVL
NRTGKSSLEGLSPYQLWLGKKRRIKHLRIVGSTSYVHIPCQKRKKMDEKAEKGYLVGYDGDERYRIYLPEKHKVVVSRDV
KFQEKFSNCEPGVNLPFQDFGSKDVVEDKEEEDANLHKSEDEDTLQEQDLSKDTAETGSEDNYETGVETSFDEENNKRKM
QSMRLRDRSKLKRPEHMDDYVAAAENFVLESPDSFHEAINSNVEWKKAMDREIYSLNQNETWSLTRLPRGSKALPCKWVY
RVKTHPDGSIDKYKARLVIKGFAQRRGIDYDQTFSSVARMETIRSVLSVAAKNDMFLFQFDVSTAFLYGELDDKEIYMQQ
PEGYEQGQGLVCRLKKSLYGLKQGPRCWQERFGGFLRKHNFKVSEADPCLYVRERNGKKILLVVYVDDGLAAATDTQDLE
EFLDELKSEFKIVSSKAECFLGLEIKKQENGLKISQQGYATRILERFRFSDCKAVSTPLLKTLEITTTGIESETSAFPYR
QAIGALMYLMLGTRPDLAFSIGFLSRTLENPTKENIAQVKRVFRYISGTINVGIVYRKQKKGILECYSDADFGGCTKTGR
STSGIIIMFASGAISWKSQRQAMVAISTTEAEIVAANEAAKEIIWLKRLFQEIDRLDRAPILQVDNTAAMRLAQNPEFHR
RTKHIANKHFFIRERIAEGEFGIEQIPTEEQLADMITKPILNTRLRILCNKIGLF
>Copia-4_GM#LTR/Copia 25-4009 via tfasty with COP8_MT, 84.1% SW:4160, 3 frameshifts and 1 stopcodon. [Glycine max]
MTNDSSKMTSKFAKLDKFEGQDFRRWQKKMHFLLTTLNVVYVLSTPMPVYMEGETLDQTRKRSKWENDDYICRGHILNGM
SDSLFDIYQNVESAKELWDSLESKYMAEDASSNKFLVSNFFNYKMIDSRPVMEQYNELLRILGQFTQHDLKMDESIAVSS
IIDKLPSSWKDFKHTLKHMKEELTLVQLGSHFMIEESLRAQEIDKVNNKTVAGSSYVNMVEESGTVKQNYNAKGNKRKFQ
GNKNKGPNKQTKLSCWKCGKPGHLKRDCRVFKGKNKAGPSGSNDPEKQQGQIVVNNFNSNTNSNYVSLISDAFYVQDDDV
AWWFDSGATSHVCKDRRWFKEFRPIDDGSIVKMGNVATEPILGLGCVNLVFTSGKSLYLDNVLFVPGIRKNLLSGMVLNN
CGFKQVLESDKYILSRHGSFVGFGYRCNGMFKLNIDVPFVHESVCMASCSSITNMTKSEIWHARLGHVHYKRLKDMSKTS
MIPPFDMNIEKCKTCMLTKITRKPFKDVKSETKVLDLIHSDLCDLHATPSLGHKKYLVTFIDDASRYCYVYLLNTKDEAL
DKFKIYKKEVELHQNGLIKTLRTDRGGEYYDPVYFQSTGIIHQTTAPYTPQQNGVAERKNRTLKEMVNSMLSYSGLSEGF
WGEAMLTACYLLNRIPNKRNKVTPYELWHKKTPNLSYLKIWGCRAVVRLTEPKRKTIGERGIDCIFIGYAEHSKVYRFYV
LESNDSVAVNSVESRDAIFDEQRFTSIPRPKDMNSMSKVSVNIEDIPLTSTETRKSTRVRKAKSFGDDFQLYLVEGSRND
IEFQYQYCLNVEEDPKTFSEAMASRDAVFWKEAIQSEMDSIMQNNTWKLVDLPPGCKPLGCKMIFRRKMKVDGTVDKYKA
RLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHNLMIHQMDVKTAFLNGELDEEIYMKQPEGFVMPGNENKVCKL
MKSLYGLKQAPKQWHQKFDEVVLSSGFVINQADKCLYIKFDTHGKGVIICLYVDDMLIFGTDQDQVDETKAFLSSKFDMK
DMGEADVILGIKIKRGNNGISISQSHYIEKILEKFNFKDCSPVSTPIDPNLKLLPNKGVAVSQLEYSRAIGSLMYAMIST
RPDIAYAVAKLSRFTSNPSSHHWQAMNRVFKYLKGTIDYGLTYTGFPSVIEGYSDASWITNMEDYSSTSGWVFLLGGGAI
SWASKKQTCITNSTMESEFVALAAAGKEAEWLRNLIYEIPLWPKPIPPMSIRCDSQATLAKAYSQVYNGKSRHLGVRHNM
VRELIMHGVISVEFVRTQHNLADHLTKGLSRDLVKRSAVGLGLKSIxN
>Copia-4_DGri#LTR/Copia 166-4110  [Drosophila grimshawi]
MSALYNIDKLDETNYDSWCVQMKSVLIHQELWSVTSGAMKCPSSDKTSEYSQWLSKNEKALAVITLSIRGSEVGHIKKCE
SASSAWIILKAVHQPTGPVRKVTLFKRLLFMRMNENENMQIYIANFVNTVEQLTEIGIVLQEEIYVILLLASLPKSYENL
VVALESRDELPKFSTLKVKLIEECDRRKSEAQRESVNENNAQAFLSKAHYPKESAKKTDKVGKNRNKKIKCYNCGKIGHI
SAECRSKANEGHAKGRDEKSFFTLLSAKNGERLLDKSAWCLDSGATSHMCANQNMFNSFEQFTDTVTLAGEKSLEVVGRG
VVMIKTESSTVKLTNVLYVPQLQCNFISVSRAVKGGCTVNFKNNRACVCDENGKTLIIANHRSNLFLCEITKTINTVFLS
ENGKSGSEDIIKWHKRYGHLNMQSLKELNNMKLVRGVNFNSTSEFDCKICLQSKCSAKPFNMSVSKSEDVLNLIHSDVCG
PINICSNGGSRYFVTMIDDKSRYVHVYFIKNKSEVLNVFKNYKNMVECQTGKRIKVLRSDNGREYVNNEFDIFLKQNGIV
RQLSVPHTPQQNGVAERMNRTLVEMARCMLLEAKLKESFWAEAVHTAAYLRNRSPTKAVLQSTPYELWTGRKPSVGHLRT
FGCLAIALDKTQNRKFRPKGIEYILVGYADQAKAYRLYNSASGKMIESRDVYFVESTTESSAVDIPMLPDFNCSKVITEV
QSNRSSSRGSSRASSRASSRASSRGSSKGTGEDNGNTDINKSEISKKSNRLERTSGHGWRRPDQMHKLNLVSSDAVVTPE
TVEEALESPQAIEWQKAMAQEFGALKVNGTWEPAELPSNHKAIGCRWVFALKRDKNGTIERYKARLVAKGCSQKQGVNYD
ETFSPVVRYATIRMVLAIAAELVLHVHQLDVSTAYLNGELQEDVFMKQPRMFEEQGVSVLKLRKSLYGLKQSGRMWNKKL
NEMMTKIGFSACPSELCVYTRHTQNNINIIAVYVDDMMICSSDIGELASIKESISRIFQVVDKGPIHHFLGMEINRKGII
GAITITQQQHVLQLLKKFGMEACRPASVPLASGYTTKCESQQCKTVNQAEYQSLIGSLMYLAVTSRPDILHSVCKLSQRN
TDPHQEHWAAAKQVLRYLRTTSSMGITYAKTGNPIKGYVDADWGGDNTDRKSYTGYVFILGGSAFSWESKKQSSVALSST
EAEYMGMSEATKEAVYILKLCNEMNIYRNMKSIVIHGDNLSAMNLVKNPVYHARSKHIDIRYHFVREVFNKLMIQLEYCP
TSQMMADILTRNLSKLKHENCNRLLGLKLIVNNVY
>Copia-4_ADe#LTR/Copia 88-4336  [Auricularia delicata]
MSSAAAAIAADYTYTTGNGFSTYDKLNGDNWLMWQKKTTDVLASHNQWGLIAGTILPPLPPFDPANPTADELAAKSAWDV
RTRKAYLEISLRVEDKCQMAIIGTSDPKVAWAALEAKYGLSDGELQGVLLVEIANTPYDPATPIQPHYDRMCAIRTKLQK
SGMPLSDAQFSTYFLNSLGKKYDDFALSVKVKTDTPDEIYARLRQQELRRIVRGEGPTAEASSEVALAARGAARGRGRGR
GRGRGNRGGRGGSNGTHDKSNVRCYGCNELGHFAWECPKKSTKPSGAPPSAKPGQSSTPTGRMFTATSAAASAMGTALTR
FWIDSGASDHFTPDVRDLCNFKYFNQPRQIRIGKGYVTAHGAGTLVYSTKLVDGDEVLGRLEGVQWCPEIETRLVSFAGM
IDAGFRIRPEGDGLHIRGRDGQSIVFVPKVDQVYPWDVRVLREPGGSARQAVSLSQDDRVPPTKSTHAIAMAAAAKREFG
WMDLHRAMGHLNLRDCKRLVDGAAAETRLTHPGNPLPDWTDCKACIEGKLARKPHPLGRERAAGPLDLVHMDIIGPMETM
SYDRKWYIYTLVDDHGRVCSAIPLYARDHALKAFKDWQAKVELSTGRKIRSVMVDNAPEFTRGQFKAYLDECGIQLFTSV
PYTPQQNGVAERMNRTLVEGARSLLIDAQLPKKYWPLAFETMAYLRNRSPTRANEFRTPYEVFYGAKPDLRHLHPFGCDV
SVAIPEDKRKKLDKRSWTGRFVGYLPWDGGYRVLDENGKVHTASDVLFDDDSLGPAEPASTEADGDASAGVPVMPAPAAA
AAPPAPAPPAPPAPAPGGAPKAEGVAPNRPVPQTLVRDVRALLQSPVAGTDFPMRTTRSGLPRAGAAFHCALAAISGVAD
DVAEHGFPDIEDPVSVEEVLNGPLAREWRAALDKEHTNLVAHGVYEWAQLPDGENLMDSKTVLRVKRGTQGEVTGYKARV
CARGFTQIPGVHFDPAQVRAGVVRHETLRAMLALGAANGLVMRQFDVTSVYLHRPLREVIYMRPPPGLEHPSDPNIVWRL
LKPLYGTVQGGDYWAEERDEFMAELGWTRLTSDRAAYRKAWDSGEAAIVAFWVDDGTSGGSEPKLLELEEQFSARYGISG
AGPLTWTLGISFARNLEQKTITLTQEQFVMALVHRFRLDDAYPVATPFAPGTVLTAEMSPQDDAELADMQGVPYRELVGA
LLYVMVATRPDIAHPLSVLCKFMAKPGRAHWEAAKRVLRYLKGTAAVGLTLGGARTIAGYSDADFAGDRDDRKSTGAYVF
RIGVGAVSWSSKKQSVTALSTTEAEYMALTQAAKEAAWIRTLIAELGGDAAMQIPLFGDNQGAIALARNPIFHNRTKHIE
VQHHFVREKVADGTVALDFVPTRYMLADLLTKPLPRDRHIELCNAIGVRIPAPERGG
>Copia-2_TMe#LTR/Copia 80-4457 via tfasty with Copia-2_PPa, 62.2% SW:1813, 1 frameshift and 2 stopcodons. [Tuber melanosporum]
MSEDSSNNAYTDKRFHCPLLTEKNYPTWERSIKMRLIAENCWEIVIGDEEAPNSPVLADGSSRAAETAYAIALKEFKTEL
VDFRKREGKAASIINSTVSSGIEFYAKDTINPREMWNVLQNKLTLVDNWGLQRTLKRDFYKMSYDGKETITKYINHLRVF
QQQLQGTNNEISNNELVNRIMTSLPASWEQRIITLDDRRDLTLDDLERALRSHQAKIADIPTQATKAFMVTRHASYQRGR
GRGYRGRGRNFRPVDRGGFEHRIRSCWYCLKPGHSQNDCGVKKKAEEAKKDRIRRHTGKEADSGRISASISLADTHALML
KRESVKYAPGEWFIDSGATDHMCNEHSDFFSLKRLSSLIHVVLGDGTTVYAYGVGSIHLSPQILLNQVLYVPSLGMKLLS
VSAITRLGYQVIFNDLGCQVxKEENEILSASLEGNLFKVNQIRLNLCRIPNVETNNVTPVARMSPASGFNLQLWHQRLGH
LNAPDVQRLENLSTGLRINKSKQASSLCRSCLDGKQQRSFNRKNVSSRVLEKLALVHSDSCGPFTTPPIAGAKYFIIYVD
DYTRMVWCYFLKQKAASEVLDIFKMFKVLVEKHSEFLASEGISYEPSAPYTQHQNGISERTMHTVMERARTMLLESQLED
RFWAEAVNTSVYLHNRCPTRALDGCTPYEAWHETKPALQHLRPFGCNAYVHVPAQRRKKLDAKSRLCTHLGYVHNTTKLW
QVWDNASSRAVQVADVVFDENSFSGRTYTHSLPPLSTLLVDEIDYTSVNDMFTEAGSLPSEPTSGNTISQMYHDGPPEVD
DTSGRMRTNMLEDRISVSDVPNPGTHTHASPMPTGSRVVRPMTLNSMAPEEGEPTTSHRVAHDRHQLPAPRKSTRARKPS
FWLRDSVTFAASATVGEDPMSYRDALEGPNRKQWEMAIREEFKSHIDNGTWELAELPPGKNDITCKWIFKLKSNADNSTR
FKARLVIRGFEQVPGIDFHETFAPVAKFVTVRVLLALATHYDWEIEQMDVKTAFLDPQLQEEVFMAIPEGYAEYSDMPHA
AGEYPVVHLLKALYGLKQAPRAWYEDIHKFFTEAGLSRSSEDHSLYFSADMIVILYVDDLLLFAKDMQSIDRMKLKLATA
YLMTDLGPIQQFLGLQINxNCQAHSLELCQSSYIQTVLTRFQMSNCKGISTPMESNLQFPRSLDKDEIHDRPAYQSKIGS
IMYMMLGTRPDLAFTISALSKHNDRPSHSHHIALQRVFRYIQQTRNTGIRYQSSSGEPGTFPKSICYTDSDWAGDTSDRK
STGGYVFILCGGAISWKTRKQDVIATSSTEAEYVAITEAAKEAVWLRRLLIELESRVVNSSMLNITSNHFHGTDEQWESL
TNHNITKQSISKLPWSSSQPQTIYADNQGAIKLSDNPQFHARTKQIDIRHHFIREARERKEVTVTYVPTADMTADILTKA
LTKEKHLQHMRGMGMVDLL
>Copia-2_ACA#LTR/Copia 670-4368 via tfasty with Copia-11_SB, 3 stopcodons. [Acanthamoeba castellanii]
MWCDKPDCAHGKCGGEGCGLLKQDKGGERHGHGWKSSKGPKQGPQEGDETTCHYCHKPGHWRNKCLKLNWGDGGDGGGGG
GDSHKVNAAQAQHESDEDEEIILSIANQVNAVADETDQWYLDSGATCHVTCRCELLHNYQPSRSTINLVLGNDFKCCVKG
TGTIHATIVVDSTMKTIVLMDVYYAPELAKNLVSMAQIAKLGCTILIEAAGCHVVDGRGRAVLQGTAQGNMLVLPLNPLL
PEQAYATCIDLSLNTLHWRFGHACKRRLRTMLKAKGIMPTTKSLSPCTICIKNKTTHKPIHKGPAARSTTPMEQLHTDVC
RPFPITTKTSKHYFISIINNTTHFTVIITIHKKSNIKAMLHSHLAATPADLKCQHLHSDQGGKYTSEQVQELLCTTSIIH
KATSSHTPEHNGIAKQFNRTIVEMVQCMLHNSGLAQCYWGEALHTTTAIYNHLPTNANNGASPLDQWDANHAGALKDMHQ
FRAKVEVLVLPSKRTKLSVHTHTGVYLRPADSGTSNHQVLVQGHILMTCKVVFPYNTHDMLMGDDMSIAVAPAIVNPLAK
EANVGSALQWASIDQSTTLAPSVLGASGSAETSPPHSPSQVELSIIEWTPQGELPMQVKPPDPLTPPDMPVMDDDPTLKE
SEEEEHAAPPSLEANDIVVAVKKKWPMPKKPPAHKRKKNTKFYNDDFCAFTAEVLQALDVSDSACTPNSYNEAVALPEAA
EWIKAMKAKYGTLDCNGMFELALLPVGLxAIGLRWLFKIKCKASGVIDCLKVRxVGKGYTQxLGIDYDEMFLLVVMMEHL
QQLLTLAVILNLEVHQMDVENTFLNATLSVHIYVEQPQGFIDLEWLDHVCLLHKSLYGLHQAPLKWNRMMDRHLRSHHFL
PTHTNPCIYMLQESSALVIITVYIDNCVIVTPLKHIERAKMVLHDSFRMKDLGQARSILGMEVMRDREEGALYLRQAGKI
MEILHDFGMADAKSIGTPMDPGLILHKLKVTAPGHLGKPYRSVVGRLSYLSQATRPDIAFAVNVLSRHVNGYDQSHWGAV
KHLLQYLRATKDLTIKYTTSGSHSQSGGLLPVGYADADWGRDVKTRRSMSGILFTLGGSPIQWGARTQKCVATSTMEAEL
NAIAETIKEAAHLNRITRELFPHIDATLQLYCNNQSAIVIAKSKPGEHTQRTKHYALKLAFLHESVSKLNVDFKYLPTEV
MPADVFTKALGRARVVELRSLINLVEPKIESKG
>Copia-3_ACA#LTR/Copia 694-3339 (fragment, but distant from other Copias; consensus seems to contain an inversion around 3340-3490) [Acanthamoeba castellanii]
MLAIETGGHKMSERSRLMILATALKSINPAFEAQFNALADDTATEAVLKALDHVEASHHASPSSDTILYAGQGQHHGRPA
FQHRQAPYGAHAQTPPNSLPPRHPTGPRLPRQQRRDNWGSDRGRWCSLHNSSGHSLEECREAAARGLAGATPRATPQTAH
TAALAAMTAAAVAAASSFLLHTPQSSILAAMTAATAAAHPSDFAIVSESAAGAALSSEPTPNKPFQNYSVFSLVAPIHLP
TIADTSATQHTTNQRDLLHNFIPLALPSRLVCADGGHIECLGHGTLRSTTIVDGQASNIMMCDVAYIPGASHTLISPQQL
LDAGCRVAFDQQCGFLFYLDDKLHLFSYWSGNLYYFNITFTPADIATPHAALVAATSPLCLDLIHHRLGHVSERRCHEFV
RQSADLSEREKRAALSSSLSPICDVCLAGKQTVRGVSRVPCTNHSVRGAYPGDLLSLDLIGPMRHQSAGGHAYLLTVTDS
YSHMHFVRPLPNKTSTAIHAALQAIAASFPPAVRIHQVHLDNARELNALMGAWILDIGAKREPTPPYTSEYNSVVEQFNR
EVMTRVQCLLFNARLPSEWWAEAARYACNVINLTPTQANLDSASPYLLWNGVAPPSRHIHVFGAPGRMRLHAHERHKISK
QSVPVRFMSVVDYSLSTYWVYIVSQRRIVDTCNVVFNERCASCPPDDRPPPTHICVPLLLDNDDDTLATLSSPILGGDAI
ANTPADSTETASTHEPPLPDLASPDCPTPMASGAAASVSPPAPLDVSPAGPASHTATAPATATPPECTPTSTQIIGSARG
STTTSSKQIERAAAASAKYSGETVAVTRSGRNVRQPARLNLLSSLAHEAPTHAAHTMLQLRRMDHALNLAQHTTTVPQTF
RE
>Copia-3_SI#LTR/Copia 40-3921 69.1% sim to Copia9-NVi, SW:3099, [Solenopsis invicta]
MMADNTRVTITKLNNDNYQVWKYKVELLLIKEDLWNVVSQEPPAEVDAAWTRKDGQARATIGLLVEDNQFVHIRDKTTAR
DTWNALKTYHQKATLTSKVYLLKRICSLKVTDDGNMEDHINNMLDLVNKLAALGEQLMDHLIVAMMLSSLPDSYNTLITA
LESRAEEDLTLDLVKGKLIDEYKRRKATGTLGESNESALKTSKESKEKGRGNQDCFFCKKYGHQKKDCYKYKKWKQNKEK
ANQAAENSCKDGSKSGEVCFHVNTKGKTLNVWFIDSGATSHMTNNKDFFEELDPTKKIEIRLADGESRKACGIGMGKLKC
LNDKNQIIEVKVTDVLYVPSLEGNLLSVKRLTERGLQVKFKSDKCYITKNGKIVAIADESSNLYKLRVSQQACVVIQKHN
KHCQHMWHKRFGHRDPEAVKQLANNALAMELKITDCGIRTTCKTCIKGKITKKSFPKKSENRTSSTLDLIHTDLCGPMQT
QTPGKKRYILTIIDDYSRYTEVFLLQSKDETASYIKDYIQKVKTQFNRKPKIIRSDRGKEYINAELKTFLRQEGIQTQYT
AAYSPQQNGVAERKNRSLMEMARCMIIDAEMPNKYWGEAVVTANYLQNRLPTKATEKTPHELWFTKKPNVNQLRIFGCTA
FAHIPKEQRRKLDVKAKELRFVGYAEDSKAFRLLDMTTDRIIISRDVIFIEDVEDGFEITENENEIQIGLHKAPSEEIKE
ESTIEEPTNNEGFIEKPEEKFQDKNADALRRSDRKNKGVPPHRYEETASIAMELQDPKTIQEAMSRTDRDKWKAAMDDEM
NSLNMNNTWELTELPNDRRPIGCKWIFKIKQDAVGNPSRYKARLVAQGFSQKYGTDYDEVFAPVVRPITFRTLLVISGRE
NFIVKHIDAKTAFLNGELKEVIYMKQPIGYEVPNKEHMVCKLNKSLYGLKQAARVWNEKIHKVLEEHEFRQSKTDPCLYM
KVIDNVWIFIIIYVDDIIIGGKEKKLVNDAIDMLRRRFDIVNLGNLSNYLGMSIERDDKGIFYLSQPKYIKKIIDSVGLQ
EAKISSYPLDPGYENIENSEDVMENSAKYQKLIGELLYVAVHSRPDIAAAVSILSQRIKCAKYSDWTEAKRTVRYLNGTI
KWKLKLGGDTKEDEESPLIGYADANWAQDKADRKSNSGFIFMLNGGTISWACRKQPCVALSTTEAEYIALAEACQEGIWI
GRLLEEFGITSKTPLKIYEDNQSCLKLLCAKGFNNRTKHIDTKYHFVKQLKEDNVMDFVYCQTSDMIADMLTKPLHGIRL
RRLAELSGLKNWSG
>Copia-3_BD#LTR/Copia 40-4371 via tfasty with CPSC3, 3 frameshifts and 2 stopcodons. [Brachypodium distachyon]
MSDTQGDRSASRFVTPLRSRTLSRGRSRGRRCGGQVVVQQEVVCKVREVSGGGAITFPMLTRTNYSDWAILMRVQMQGAG
LWEAVEGEETSAWQERQTFGAILRSVPPEMMRVVAPKDNAHEAWEAVRLMRAGVERVREAKAQKLRSEYENLMFKSGESI
EDFLLRLSGLVTNLQQVGDDITEEKAVKKLLRVVPPRIKPVAVAMESCLDLSRMSIEELSGRLTAAEDGLNTEPQAGSQL
LLTEEQWMARQAQRDGGGSSAGGGDKARGNPKPKPKGKAAGSANDSADKAKAPKKGRCNNYGNCGHWARECRKARREEAN
LTQVQDDTPALLLAMTSDVNVSEQGSDAPQTEDRAMQLAVAPAASLRPGGDTARMAVEHVYLNEERVIPVPSPDDHWFLD
TGASNHMAGNRSMFTELDMQVKGMVKFGDGSLVDIQGRGSVLFELKDSARRVMTEVCYIPRLRSNIISVGQMELIFDRER
LLLARVRRMKNRLYSMFLNLTTPVCLLANAGDTAWRWHARFGHLHFRGLHDLGAKQMVRGMPIIKRMEQFCEGCSLGKQH
RVPFPSATTRRAEERLQLVHGDLCGPITPESAGGRKYFLLIVDDRSRFMWLEVLRSKDEALKYFKRIKNIAENEHDLRVK
AFRTDRDGEFNSEEFDAYCDEMGIKRFTTAPYSPQQNGVVERRNRTVVEMARSLLKGMGVPATFWAEVVKTAVHILNRSP
TRRLEGITPYEALNKRKPDVSYFRTFGCVAHVKMVKPGVKKLDDRSKPMVFVGYEEGSKAYRVYDPVAHRLNMSRDVVFE
EDRLWDWEATGEMPEKVGELTVEYHVEHLHGHGAASGSTSAAPAAAERSSTSTTSPVAVEPAADPAAADDVDRAEAAAAK
PAAAEGAVAVAPQRPSHPMATRGQHGIFFPNPRYNKDEYDCSGSCLLAAEEPASVDEALKDESWKKAMEVEIDSIRNNGT
WDLATLPAGHRAIGLKWVFKVKRDPAGNIIKHKARLVAKGYVQRQGVDFDEVFAPVARLETVRLLLALAAHSGWQVHHMD
VKSAFLNGDLAEEVYVHQPAGFVDWENSSKVLKLRKALYGLRQAPRAWNSKLDETLTSLGFERCPIEHALYRRGNTEDFL
LVGVYVDDLVITGTQVGEIEKFKLQMSELFQMSDLGLLSYYLGIEVVxTEEGITLCQASYATKILEQAGMSGCNACHTPM
ESRLKLSKSDGGESVDATRYQSVIGSLRYLVNTRPDIAHAVGIASSFMESPSVHHWAAVKQILRYVxGTTGYGCSYKRGS
KGAALVGYSDSDLAGDTDDRKSTSGMVFFFGDSIVTWASQKQKIVALSSCEAEYIAAAGAACQGVWLSRLLAEMLGTKPL
RFRLLVDNKSAIALCHNPVHHDRSKHIDTRFHYIRQCIEEEKVDVDHIGTNDQRADILTKALVRVKFIEMRLMLGVKEVK
QVVQD
>Copia-4_PR#LTR/Copia 5-4004  [Phytophthora ramorum]
MSNPNTFVTKIRKFDGSGYRLWARHLQLYLEVKEVWMALQFPTPTADKLKGEELATEKPLHKMVVQHKLAMTIILTALTD
DIAAEVADLGHPMLMLNALKNTYRHVCDTTVGALKRDYLSRYLDGGGGMLVHIHDTRLMLADLACYKVNLSDEEKRSNFL
QTLGPDWNGYVSTLESSHSLEEMLLKAAAEARRRNVQSQRGQGGNAAAVRTGSAFTTTGRGNGKRKGKCFHCGKQGHYKY
ECRELMKNAGTNNKSTGRWNSDDQSSSSDTEESGFAFQVETLENADGDLWIIDSGASSHMTGMASALTNLTKLTREVTVT
TAGGMRLKATQSGKARLVPDDGIAFTLNDVLYVPGLQRNLISLNKAGEAGLRTVFHGDTCVLSKGTSRLVASRNSSGLYV
VTVTRTRKTTAYQATDAVDSIRLWHERLGHLKLRDLIKVLNDNSVPWTGSRKLKCHACAAGKLSRQPLKSKQPRILKRGQ
AVMSIDYVGPMQTTSHDGFTGMVSIIVEPFHLAAVFPVKDKSSATQLHAIRSCMGMLKAAKPGTQICVLKSDNAAEYTAG
DVAEFCNEQMIAQEFSSPYTPEQNGKVERSNRVVVEMARSLLQGAGMSNRFWSDAVLTAAYLRNRCPTKVLQGKTPIEAL
TGSLPGLRKLRVFGCEAQVLVPSATRRKLDAKTETGVLLGYGPGGQFRFWIPSGVGSGGRVVVSRDAVFYEENLRNTVDF
DLSEPDLREPAHVPKPVGAVQPMEDAEPVGAVVPATRSQTDVDMASPRPPAMPSSPDTWGEPRQEKQIVRRSKRVSKKSV
RRLEFEQLHTAEEAVAFAINQDPDTLEEAMSRPDANEWRRAIEKELQSLKDNNTYEEVTPPADVKPVETKWVFRRKTHAD
GSLDKYKARLVAKGFTQRFRVDYTETFSPVVQHDSIRVVLAVAVQRKWRRRQLDVETAFLNSPLREVIYIVPPTPEGRLW
KTLWKLLKALYGLKQSSRAWYETVTQFLREINFRACESDPCVLIKLCGATIVVVLLYVDDLLILSNTDDALDEFEEQITQ
HFSMHTRDIADAFVGIELSESRNGEALILSQGQYNRSVVKSFAGDERQLPRTPMEEAFQTRVRLDTDVLNESFRAVVGSL
LYSSTVTRPDLALSVRVIAQETERPTATIRDGVDRVMGYVARTADIGLLYRRSGRGDLHLEVYCDAAFACEEGRKSSTGY
VIMLNKCCIAWGAKKQPIVTLSTTESEYVALTAGVRECIGLKLFLEELGLPLAGRIIVHEDNQGAQHLAEGKAVTQRSKH
IDLRYHWLREQVRCGVIELHYCPTREMIADIMTKPLPGPAFATFVDMLGLRRVG
>Copia-6_DPu#LTR/Copia 59-4362 via tfasty with Copia-4_DPu, 2 frameshifts and 2 stopcodons. [Daphnia pulex]
MATRQLTSKDVAHIPKFNGTNFTNWKFQLFMVLEHFKVLKIVLGEEKKPVPTVSSAGGNNSSNDADIEIWVDKDQSARIA
ICGTLEVKWQSSLVNCKSSNDMWKRLASQYEQATEENQYQLLQRFFDYKFQKQHSVMDHITAIETIAAQLSDIGSERTEA
EIITKIICTLPPSFRSVRSAWENVDDSKKTLQLLTTRLLKEESYNQEFEGVHSDAAFFAKEPGFKMKKNVSCGYCGRKRH
VEENCWKKAEDERGSQAKFAHSYGKPEPSHHSSQQNHHGSGDYAFQCSISSHSSPKDDNWLVDSGASQHMSDQRWAFVNY
QRVKPGCWPVNGIRENRKPLQVHGYGTILISSLVEGCWHDGVLQEVLHVPKLGANLFSVRSAACNGFGVNFVGEKVEVVK
NGKTVAVGASTSNNLYRLNVVSGHVATKLLRPQESFAVLARPVLHSIQLWHQRLGHVCISTIKKMAVSKMADGLMISEDN
QDYFCEGCLFGKQHRLPFPIGRTRGTHVGHIVHSDVCGPISVPAIGGSTYFLTLKDDFSGYCIIHFLKRKSEVMSLFQNF
VQRIKVEFGHSVGTLRSDNGGEYVGKAFEEWLLENGIRHETTVAYTPENGVAERVNRTILESARSMIHFAGLPLKLWAEA
CNTAVYLMNRVSTKSIIGKTPYEIWKGVKPNLSHIRVFGxTVYVHVPKEKRNKLEPKSIKCCHVGYCELQKGFRAWDQGT
GKVLISRDVIFQELEKGMPGGPPCGISDLIADIFHQQTQSNDSQPPFNLLSSPKTNRIFDLVPVVCDDDEAGLVSSESAT
DPVFVPEQIADVFVPEQVADSVHVPEQVADPVFVPEPVAEPVFVPEPVAEPVFVAEPVAEPIVRPILQPGVRPRRAGLPD
QDLIIPGPRIRTPVVRWIEESTTPPYAGLAAVGAIEPTTLEEALASPQADQWKLAMEDEMRSLEQNETWTLTKLPAGRQP
IQNRWVFKLKLDGDGAVRRYKARLVAKGFTQRPGIDFEETFSPVVKHDSLRAVLAVAAERDLNMLQLDVKTAFLNGDLNE
ELYMTQPTGFVASGREGEVCKLNRSIYGLKQASRAWNIKFHGFLIKFGFIRSSADPCVYIKKEEDCLTIIAIWVDDGLIC
GSDIKRLDSVVEYLSQNFEMTCEPVDCFVGIQIVRDRGRRTIHLSQENYIARLLEKFNLSDCHSRIVPADPFTRLSKNNG
QDTSSEEEDLARLYREAVGALIYAVTCTRLDIAWAVSxVAQFSSRPTRAHWEAVKRILAYLKGTQTHGVTYGDTSAGEGV
LQAYSDADFAANVDDRRSTTGVVLMLNGGPVSWKSKRQSCVSLSTTESEYVAAAAAAKEIVWMRRLLQDLGCNQLKPTYL
FCDNQSAIKLVRNPQFHQRTKHIDVKFHFIRDLQEDKVIDVVYVNSEGQLADLLTKGLDGPRFRKLREEIGISV
>Copia-6_DAn#LTR/Copia 121-3988 via tfasty with Copia-1_DYa, 79.6% SW:3362, 1 frameshift. [Drosophila ananassae]
MSVSWQIEKLNESNYDVWCMTMESFLIASDLWDVVSGDLVKPEDGADLVKWIKTDKKARAYIVMNMTGAQMTQVKKCMTS
REMWTKLKELHMPDGPVQQFQLYRRLLGLKLQQGGSVLQFVNEFVEICNKLCELDIVLSDPVKVIMILSSLPKSFELFVV
AMQTRDKLPSFEQVKSKLLEEGERHKGIEVYEEAVEKTAYSAGTVNEKTRDNTKNRKNFGRQSNARKPLECWSCGQYGHK
AANCKKRNDSKKETENGRSEKSYSSVCLSEQPNEISRKMWCLDSGATAHLCCEKSRFTNFKEHEERILLADNKFVESEGR
GSVRVIWKNFGITLMDVLYVKHLQCNFMSVSKAIDNGLNVTFTRDNASVIENDGTVILHAKRQNGLFIFESENNKCFNIT
RVTTPQLWHSRFGHLNFGSLNKMVKEHMVNGLKSNFENHDVCEICAKCKISGKKFPKASESRAKDILGLVHTDICGPVNQ
ASIGGARYFATFIDDKSRYVFVYFLKSRDEILEKFKEFKTLAENQTGKRLKVLRSDNGREYLSGAFEQFLIDNGIERQLS
VPYTPQQNGVAERANRTLVEMARSMVVQAGLNESFWAEAIKTASYLRNRAETSTLHGMTPFEVWTGRKPCVGHLRVFGAK
TIVLNKMRKRKFSPKGEEHILVGYAELSKAYRLYNFEKRRVITARDVIFIEDDFTKKDLAKVSEYQIVELQCETPVDECL
QVEPEVSSSILSSTEQQPQDVEARRGPGRPKMILTGLPGRPKKQYTMLNILTTEDVSVPSSYSMALSSEHGDKWKASIQK
EMNSLKANGTWSLVDLPEGQKTIGCKWVFAVKRDKFGNVETFKSRLVAKGCAQRLGINYFETFSPVARYSTIRLVIALAV
EYKMFLHQMDVSSAYLNSYLQDEVYMRQPEGFVDKQFPKRVLKLHKSLYGLKQSGREWNEQLNAVLLKIGFTPCPSEPCL
YIRNTQGIMGIVVVYVDDLIISSSSKDDLNEIKVLISQSFDVVDNGTLKHFLGMEIEREGDTGGVRIGHKQYIETLLSEY
KMQDCKPNSIPLEVGHQIKCDNEGCSQVDQVKYQSLIGSLMYLAMTTRPDILHSTVKLAQRNASPHGEHEAAAKRILRYL
RGTSELQLCFKRTGRDIHCYVDADWAGDSTDRKSYTGWAFFAAGAAFSWESKKQSVVALSSTEAEYIALSGAAKEAMYIK
KLITEMGFGGIKTLQVFSDNQSAQCLAKNPKFHARSKHIDIKYHHVRDMYKSKIINIEYVSTENMIADVLTKNLNRVKHE
KCISLLGLL
>Copia-6_EPa#LTR/Copia 52-4132 via tfasty with ATCopia56, 85.7% SW:4512, 2 frameshifts and 5 stopcodons. [Eutrema parvulum]
MSSARVEMEKFDGKRDYMLWKEKLLAHMEMMGLLEGLEEDVTSEGGDSTAETREEPLAEVTTQAATATEKSLKEKRGKAR
STIILSVGDNVLRKIIKEKSAAGMIQVLDHLFMAKSLPNRIYLKQRLYSYKMNDGMTIDENINDFLRLIADLEHVKVMVS
DEDQAIILLIALPKQFDQLRDTLKYGKTSLSLDEIVGAIRSKELELGASGRSTRHSSEGLFVQERGDLRRETKLVTKEST
RAYQSLKERKTCWICGKDGHYKKQCFVWRERNKQQNYSSSEKGESSNVTGQIIDAAALMVSESLLSLGEDFNKIWIMDTG
CFFHMTPKRDWFITLDESCTGKVRIANDTYSEVKGVGSIRIKNEDNSTILLTNVRYVPGMSKNLISLGTLEDQGCWFQSR
DGVMKINKGCRTLIKGQKTDTLYVLKRSVLTGSVNASIGLKDETRLWHKRLGHMSQKGMKALLKKGYLDKSKVTDMDFCE
DCVYGKAHRVSFGVGKHVTKGKLDYIHSDLWGSPNVPLSLGKCQYFISFIDDHSRKTWIYFLKKKDEAFASFLEWKKMTE
NQLGRKIKTLRTDNGLEFCNIEFNDLCKEEGIVRHMTCAYTPQQNGVAERMNRTILEKVRSVLSESGLPKSFWAEAAATA
VHQINRSPSSAVDFEIPEEIWTxSRPKYEELRVFGSVAYIHNDQGKLDPRAKKGVFIGYPAGVKGYKFWILEERRCVVTR
DATFQEEKMYKHLNQSAEPQPESQRTEVPLIYEINHGDFSDLGGADKDAERGxEVNQNTEDNEQEEILSEDEEYQGNSHL
ENYQLARDRERIVTKKPTRFEESNMVGFALMVTEDGRYPEPCCFDEAMRGKDWKLxEEAMDEEMQSLHKNQTWTLIEKPE
NCKVIGCKWVYKRKAGISGVEEPRFKARLVAKGYLQKEGVDYQEIFSPVVKHVSIRLILSYVVNLDLELEQLDVKTAFLH
GSLDEYILMEQPEGYQVKSGTEEEVCHLKKSLYGLKQAPRQWNQKFNTFMKDSGYQRSSFDSCIYYQKLEDGxYIYLLLY
VDDMLIAAKNKEKIQELKDLLSSEFEMKDLGEAKKILGMEIKRDREEGTLELSQEDYLKKVLHTFRMDQSKGVLTPLGIH
FKLRGAEDDQVIAQADYMKTIPYSNAVGSIMYSMIGTRPDLAYPLCVVSRFMSKPLKDHWLAVKWVLRYIRSTxNLRLIY
KKQDSLEIKGFCDSDYAADPDKRRSVTRYVFTAGGNAISWKSGLQKVVALSTTEAEYMALTDYVKEAIWLKGLAAELGFV
QDHVEVLCDSQSAISLSKNFVHHERTKHIDVRLHFIRDKITDGEIKVSKVSTLWNPADIFTKTVLVSKLQEALELLRISN
H
>Copia-6_ST#LTR/Copia 196-4716  [Solanum tuberosum]
MTNGRTSADSIPGNNVENTGVSMSIPNSVIGQGIDYNHPLFLSPTDLSGVNLISFQLLGIENYSLWNRSITLALLGRNKL
GLIDGTCSKEMFSEELWGQWERVNVVVLSWLMNSVSKSLLSGIAFATNASHVWSDLKERFDRVDGSRTYSLHKDIVSLQQ
GTASVSVYYTRLKTLWDEFEAVVPSPGCNCAKSKEFVNHLSRQKLYQFLMGLNESYHQARSQILMMNPLPTVNHAYAMVV
RDESQKAVISHISNMGLSSESMDSMAMYSKSSTASSTSGVNQRFKRNSLLICDFCKCKGHSKEFCYKIVGYPPDFKSKRK
VQGGVPSGSNNFGPGQAHFSYGLNTNVHEAGWDLKSATAQSEHGRVDGNSISKAASQAEIDVKQLLKGCTFTKEQYDHIL
RGLTQNQGLATSESNTTFAAHTAGKSLFVSENNKVWIVDSGATNHMVSQMDMFIKGSVSKLQIPKIVHLPNGGTTQVTHV
GSCALTDRSVISNVFYLPEFKYNLMSVSKLTKELACSVTFFPNFCVLQDLYNGKVRVVGKEAGCLYTQSSGGDEQNTSLT
VAQVPSDMELWHQRLGHVSSVVLAKMFDLNINSMCKVSKCLVCPYAKQTRLTFPSSSIKSCTSFDLIHVDLWGPYNTATF
DGNKYFLTIVDDFSRMTWLFLLKHKFDVCVALKIFLQYVKNQFATQVKVIRSDNGTEFVNSVCTTMFQELGIIHQRSCSY
TPQQNGVAERKHRHLLEVTRALRFQGKIPLKYWGHCVLAAAYLINRVPSSVLNYQSPYERLYGSKPRLTHLRTIGCLCLS
KNLVEHDKMMPRSKSAVHMGYSETQKGYVLFDLTAKSFFVSRDVIFREDIFPFSQIKMSEKHSLFQNPLSDSVVLFDTST
TQFFQTPSSINDELSCLEGPSVLPDVEIVSSDVSDSVGEPVPAVTDTVIPADPRRSTRTKNTPTWLKDFVSSKLHSKVQY
LVCNYISYGHLSPTYQSYIAATSSVREPTTYSEAVTDTRWVDAMQTEIQALEDNKTWEITELPPGKKPIGCRWVYKIKYK
STGEIERFKARLVAKGYSQLEGIDYQETFSPVVKMVTVRTMVSLAASRHWHIHQMDVFNAFLQGDLDDEIYMQLPQGFVS
QGEKVCRLTKSLYGLKQAPRQWNHKLTEALTTLNFKQSQYDHSLFVNKSEAGIVVVLVYVDDMMITGSNLKLIEKTKLEL
QQAFKMKDLGELKYFLGIEFTRSTEGILMHQRKYALELIAEVGMSAAKPAGTPIDVNVKLTSKLYDDHEKSHGTPEDPLV
DQTKYQRLIGKLLYLNMTRPDLSFSTQNLSQFLQQPKKSHMDAALRVVRYLKKQPGQGLLFPSSSDEVVTAFCDADWASC
PLTRRSVTRYVVKVGNSLVSWKAKKQTIVSKSSAEAEYRSLASTVSELIWLLGLLREIEVEVQLPVQVYSDSKAAIQIAA
NPVYHERTKHIEIDCHFIRERLQQGLIKVNYLPTQEQPADVLTKGLSKYQHEYLLSKLGVLNIFCPT
>Copia-6_LBS#LTR/Copia 32-8379 via genewise with Copia3_XT, 2 so-called introns (2597:3215, 4259:7844) It appears that a Ngaro element has inserted into Copia-6_LBS (betwen 4259:7844) Do not know what the first insert is. [Laccaria bicolor]
MSTSPTKAFKFAKLNGENYALWFQHMQSSLQAHYLWLIVTGDEPCPTKHSDTQPTEPTALTAWKATKKEWLDWSLRDQAA
QGLMKGAAEPSQWPHIAQMKTSKEMWDAWKKMYVTNQQHINVHYYFEDLYTRKYDESTSMADHIAAMLDLGLKIKAAGEE
IPDIHIARALVLSLPRTQTWELVKVQLFNKDKLTSEIVSTELQATANRTAHEKKSETAFLAGKKQASGKGDSKKKGGRGP
KADDECRYCHKKGHWINKCPQHEEDEKKNNGGSVNLAVSNLRDLGAREIGWVFMAGVNVKESGISTELILDCGATSHMFC
DRHFFTSYTPMSTPESISVGDRRDIPVAGRGTICFQARLPDGYRSISLHSALHVPKLAANLISLGTLQRQGVGFSSYQNG
IVIKLGEEELFRASFIDKSDTLYHVEVAQMQTESAYVATSGSLRLWHRRLGHISLDTIRRMHRKNMVEGLSINSLNQYDH
LCEGCALGKSHRLQFPKASTTKYELMDLIVLDLTGPMSVQTWGGASYALVIVEVSCRKPVGRLLHSKKEAYAALREVVAM
LERQSGKKLKRMRADSGTEFVNELVNTFCQKNGIVLETTVPYTPEQNGIAERAIAVFFKMVRCMLHASKMDLRYWGEAFL
YAVYIRSLTYTSALDDIVPAHAWSGIKPDVSHLRIFGSVAYANIPKKVRGGKLEVTSIKCRLLGWWADETKGYRLEDVET
GKIITARDVRFAEDDSPGDLAVIETRGVAPTEAEINRLVPDDVFGKTAGSVSPISQSKSSPQPAAPVEPPVSSVDDASPS
LEADVSVPKKTSKWDNLPPRDHPRRERKPAAPPGDEATEEEFLLASNHTLDNRAFASMWSPYSQQWEKAIATEYDTLRNT
DTFEWVPSLPHGRKAVGSRFVFREKHDGNGDLAKHKARIVAKGYSQVPGEDFSETFSSVAKFTTLRMLLALVAHSDLELH
QVDVVGAYLRGLLDEEIYMEVPEGVKEEGKEGWYWKLKKALYGLKQAGRQWKAKLDGVMRNLGFEKGQADDCLYILREKD
EIVLLVLVYVDDMAVAGRSLARITQFKTDLTKVFDITDLGELKYILGIQVKRDRKARTISLNQTAYIHHVLARFGMQDCT
PVSTPLAVKHNLSISQSPKTEEERTEYTKYANGIHYLEVVGSLLYATQTRPDIQFPVGLISQFGGNPGKPHLKAAKRIMQ
YLHIMQDTVKGTAHFGLVLGRRGEGSFDLVGWTDSDWAQDPDSRRSVGGFVFDVAGSSVSWSSKKQPTVALSTVEAEYVA
SSNATKEAIWLRVLLEDMGYPQTTATLIHADNQGCIALARNPVAHSRAKHIDIRHHFIRERLQNSEIRLEYCSTKDMLAD
IFTKQLPREAFETFRSALGVL
>Copia-6_AA#LTR/Copia 100-4128  [Aedes aegypti]
MEDSGKEEIRRVAMFDGHNFVSWKFRMMTLLEEHDLVECIDVEIDDVEELKVEETDTAAEQQQKRKALAERQKKDKKCKS
IIVSRIHDDQLELLHGKSSAKQMWDTLVRIFERKSVAKRMQLNRELFELRHSGGPLHDYFVKYDRLIRLFRNAGGKIDDI
DVVCRLLLSLGSEYDAVVTSIESQPEEQITMEFVKCRLLDEEIKRKSIAASDVCGDHNESAAFSGSGKVSRTPKLKKPRV
WKCFGCQKEGHKIANCPEKKEKKAVKPSAYSAEPCAEPSDDGGGVVFLADERKSKPPMSRVQWFVDSGATEHICNDKSLF
AKLSPLKKPMEIAVAKNGEWVTAKYVGDVPVLSVVGEKVIESTVSRVLFIPEARCNLFSLSKVESAGMKVVIAGGRLEIF
RGSNVVATGERRNKLYELNFFSRRCNNDMLCFSGQISKETELWHRRYGHLGDRNLSSLMKNGTVKGIPSKCSGGATTICE
PCVSAKQTRNPFTLSEERRSSRVLEIVHSDVCGPVTPVGWNNVRYFVSFIDDWTRFTVVYLIRSKDEVVDCFKNYEAQVT
AKFGVKISRFRSDNGGEYTSKAMRSFCASKGIKMELTVPYTPEQNGICERMNRTLVEKARSMLFDSAVGREFWGEAIQTA
AYLTNRSPCSVLDSSVTPSEVWEGTKPDVSKLRVFGSPAYCHIPKERRKKLDEKTWKGVLVGYCANGYRVWNPETRQIVA
VRDIIIDENARLADVQSKKEVVRESSVWDYAEENSGQQEEDDNHAEAELEESVRSDNSEIFDTCDDSAGEEIIPVQSSAR
RQRKPPSWHQDYDMTFAGVALGAMNYVNNLPDTIAELRTRADWPRWKLAVQEELESLRKNGTWTLCKLPEGRKPITCKWI
FRIKPGDDEQPDRFKARLVARGFCQKKGFDFNETYSPVAKLDTLRVMLAIANKERMSVHQMDVRTAFLNGVLSEEIYMTQ
PEGMHQEDGLVCKLRKSIYGLKQASKAWNDKFHGFVTELGFRRSKSDQCLYVRGTGKKKIFLILYVDDILVIGHDSNEIE
LVKTSLAKGFDMTDGGEISSFLGMKIERNLQRRTMRISQRRYLEALLDRFNMADCKTSSIPMECRLRLDKGTEENRTSKP
YRELIGCLMYVALTSRPDLLAAVNYYSQFQSCPTDMHWTHLKRILRYIKGTLDLGLEYMGRDDADMLSAFCDADWANDIS
DRRSVTGYLFKVFDCTVVWATRKQRTVALSSTEAELCALCEATCDGVWLTRLLEDVGYRSDVPIPYHEDNQSTIRIVQEP
RDRSRLKHIDVKDCFVRNLVQQGSVVLKYVPTETQEADILTKGLPAGHFKRLRSAIGLRDSMN
>Copia-4_Trm#LTR/Copia 37-4200  [Tremella mesenterica]
MSPSDSEDDQTTTRRRIILTGSDNYKDWERSILARLIQKDLDEVVEKDAALPLQPADERKSWLRKDKKAWAAIDESLSAA
VHNVLPPHLLDLTTSPSGLLAKSLLDYLRTTYSAARSTRKAELYRIIWRTDIEEDDPMSSISSMRRAFNDLTTSSVVLAD
SQLAYAILIALPPSYAIIASTFYMLGDPSSADVISAVNDEFRRRQTRENGALALAAKVSKLSHGRVRQERSGRIRERGPV
VKDGSKPYCEFHNTNSHSTTECNAAKRVTAAHMATTTSSLDPLSTTTALNFVATVSPSALVATGLSSTIVVDSGASHSMV
YEVHLLTDVRPLPSPIPVVIGNGSTIEATKMGILTLESGFQVPDTLFVPQLGRNLLSVRATTSPSKTWVFNCTTATLLER
ENVVLSAKLCDDLYTLPCTFSTVQTHFTKSNTTEILLRTWHRRLGHLNIQAVVKLGKGGRLGEVGSWENVSTHEFVCAQC
IQGKGKRLPSPPSTQRATKLLGSLHLDLFGPTRTTSHDGYRTFLTVYDDFSQHLQILFLHSKADTLTTIQQYITLVENQL
GERVKSLRSDRGGEFTSAAFKKYTDTKGIEHQLIPPAAHAQNGRVERAHLSILDLVRTLLVDSGLPDQFWSEAARYATYI
RNRAPRSNGSVPEDIWRKHPVNYQHLQPFGSPVFFRAHTETNKLKPRYSPGKLLGYEVNTTNYRIWDTSAKCLVISRDVT
FAGASSNPTPLTHTSIPPTPSSRTHSEYYIPTPTTIQEQRSEENTQQSNPDELPGRITPPNQSSRWQGWAIEEDPRFNRE
SAPTPDSPLPPVDEHNTEEVPRRSRRQAGAAPEFTPRTLENKLALSANTDLSSIMYSAYSAILAPQSFNEAQTSQDWTQW
KEAINEELAKMEKYKVWVVVDRKEVTGRTLKARWVFTRKIDGTTGQPAGYKARWVAKGFSQLSGIDYHELYAGVAHKDSI
QLFFAIINYQDFHCDTVDIVAAFLNGDLEETIYLEPPEGSNIPSGSVIRLVKSLYGLKQSPRCFNKKLDQWLRSQGFMPT
TADNCIYSRSRNGSSILIALHVDDQLVASNSRIELDEFKTQLHAAFEIKDNGPASYFLGVNIYRNRKLKTLQLSQEHYLK
AILERFGMTNSKPAQSPLPSNYRRTETTNVEFEEVKHEPFPAMVGSLLYAATITRPDIAFATALLARSASKWSRQDINAA
RHLMRYLVGTTNLCLTYNASLPNAKSSIEGYADADWGGCLDTRRSTTGFLFYGFGGPISWRSKRQHTTALSTTEAEYMAS
SDAARQAIWLQHLASNLGYPHPKGISIVNDNQAAISLSKNPVQHDRSKHIDIRYHFVREKIENGDITLSYIPTENNLADI
LTKALPAERHEELATLMGIREKGQIGSM
>Copia-4_PSt#LTR/Copia 163-4716 60.9% sim to Copia-22_MLP, SW:1537, [Puccinia striiformis]
MVNTRSTNPEIIRPDFTARVTPQRTNIPSSQSSPSTSASSAIFVSADMSQNPFGSPSVPNPSPYANIYPPLPNFPPLGNP
MKPGTTFHDTEAKVDNPPQDPLSRSTSATPSKAKGPDDDQQSQGAHTSSLSALNDVVREEIRQTGGLNLDSDLVKLLLIR
QLTAEGSSTLNSNQSSSNVANQLKWQQLGKDLQPPLLLDGSNFPSWSAAMKDMVATVTSDKAYFSTDKSSTDLPTSNGVL
AIIKFSIDPALRSSLNGMNAHGAYSSLSGRFSNPSWSLLLGRWSDVAQAPDASDSISAGYEAIKRSLLDLEERLGGWTTD
KLLSLSFHSSLKRYHQPLADAMDSRIAINPSYRVQSTDLLNTASGLHQTGNSVSPSLMGMSAQRGGRGGRGGRGGRSGFS
SRGSHVSRGSAHGQISASQFPPDAWGKKNISPSFPCTSCWEWGHWGPDCPRTKNNLPALEDPRGKDPNWRPKKSSVLSSR
LVVTDGSLASVSATPEQPDDVLVDTGATNHVTSHPNFFTHLQPTNIRLRVASQECLSVDGIGDAIIPTRFGGLKLSNVLL
CSRVKGSVLSVGFFDQWDGEISFENGNFIFTQNSLRFPTYSTNYRWFIPALSSSSHISSPLASPSKSSSALFSVSSQLWH
SRLGHLAIRSLNRTIAERCVLGLPEIKFKSYAGKCHSCSLSKSTHSPVANFSREMASKPGAVVAVDLVGPFPPALDGSKY
GLVIHDIYSRMTSVVGLKAKSDAAREVMDWIENFNKHSDHDVLCIRSDNGGEFISNKFNLFLSKSHIRHEMSVPYEHHQN
GNVERTNRTLLDMARTLLVHAKLPDSLWFLALKQATFIYNRILHVDDFKTPYELSLNKVPSLEMVRVFGCRAYMHDLNYP
KQFVPRSTPLIHVGISDVSNGWLLWDPVTNKIERSASVKFHEDELPSQLGKAASLEAVLNSIQVSTLGDFSQIKEMEIQD
AFLSSAVSLSPYMSDAPNTYHQALCSDLSVEWMKACGAEIEMMVQLRVWEEVPFSDDLEILNCRWVFALKRDQEGEIVKY
KARIVAQGFRQVHGVNVGETFAPTPTFSSLRILLAMASKFRWPVASFDVKSAFLHSDIDYDVYIRPPPGVTVSPGCVLKL
RKALYGTRQASRCWWLHLKSKLASIGFVPNLEDQSTYIYRSGSDMAFLWVHVDDGLFTASSIELMDRLKSKLNSVLDLKW
DEKLSSIVGLRVKEVDGGFTLDQPMLIDKIINLSPSNIKARTPLPSSDLVSNPSKEMDLEYMSRIGCLLYLSMGSRPDIT
FSVNFLARFSMAPDSTHWAALEHLISYLRYSAHLSLPIIASNSTHEDITTFVDANWGGEGARSVHGFISKLWGAPVSWSS
KRQTCIARSTCQAEYMALSFASKDACYISSLLSGFFTLPPPLILSDNKAAVHISKDCGTRKEHRHVDREFHIINELLYKD
KVRLEWISTQDQQADIFTKALGWRKVTEFLSQMGLRLPSHTLASIGGTVCAGCDNHTPPAIRLSPGNPNPMLDWFNGG
>Copia-5_MLP#LTR/Copia 13-4184 via tfasty with Copia1_Dmoj, 60.4% SW:1339, 1 frameshift. [Melampsora larici-populina]
MSTDPDTTSSAPPKTKRSYEAPATMNPALAAATTALAAAPAAIRMQLTDKNYNVWTTWMESEMDNLNIFSVVDGTYVLQE
NAPADELVTYSKLERKAYNFIVRHLDKNNLALATQFSSKAGTAKTGAGLWKHLKEKYMPNNVFHQTHVLHTFLHIKYQTS
TQFCSEVRSALATLSRVGLDIPERVLVVLILARLPRSMESFIRVVSHSMNAKTEVNFILNRLEQDAHQQATMDEVLPSTA
LISTGNKNPSHMCTHCKRPGHLEPRCWIAHPELKPSYARGRKVNANIASYEAPVATSSANVYSTPTAVYAGVDLEDPLSA
PSFLTSNFALNASLTPVSTLLDSGCSDVMYANRDAFSSYSDFLCNINIGEVGRTVQAIGRGVVTVQGAGGIVTFENALHV
PVLPYNLIPLSLLWQKGSQILYHGDDTFSVVRGDRLVFNGVVKNRLLFPSISTIISTLDNTNIVSFNLWHDRLGHINHDY
LKSTAAQTEGVDDLPGKDFCESCAISRSTRLPFSGKIPRPSHPLDVVHTDLSGRINPPTPSGYEYFMKITDGSTSYRWLF
LLRFKNEALDKFKEWKAQAERSSGRVVKKIVSDGGGEYVNKLFYEYLKNEGISHDVTASHTPQQNPFSERGNRTTNEKAR
TMLHRASMPAFMWGAAVLTAVYLENRTVSKSCDGMTPFEALYGSVPSIGHIRIFGCAAYRHLTHGRDGKFGPRAEKLILI
GFVEGMKNYRLYDPSTGTISTSHDVRFNEAEFPYLQLSNDPNAEIVPFTEEEILGREPLRIRLHQPVIAEEIRQERHILT
ATALISIIGNSIDESANLSTLDLEPNPPTYARALLTRNSSKWQRATFEEFDSFAANHVFEIVDSLPPGHKPISTRFVYTR
KFDDSGFLNKFKARCVARGFLQEEGKDFEETFSPTGRLATLRAVFGHAATEDLEIVQADFVTAFLNSTLGEGEVVYILIP
DGFVDWIKQLPLESPFRAWLPALIERCGSLWLKLLRSLYGLKQASRSWYLTIKAWYYKHGFIVSDADACLFVWVGKNGDR
VLIYMWVDDIVLVGSNVRWVLDELKKDFRIKDLGPVKMMLGMEIKRNREAKILSICQSKYINELLKVYGMEDCKSLGTPL
QSNLPILPGTEEEVLSFKSSGLNYRRAIGSLNYLSQCTRPDLSHPVSLLSQFLDKPTMDHWNHFKCVLRYLRGTSTLCLT
YGVQPVNETLLKFQPDISGPPVAFSDSNWAGCTISRRSTSGYTFIFNGGAVSWRCKKQPTVALSSTEAEYKGFLDAGQDG
MWIRRLMADFGYDQLISTTLFGDNQGSIALSRNPVFHSRTKHIEIQFHWIREKVQDKSIDIKFCSTNDMIADILTKSLDR
SKLQQFRRDLGLIEGTDLANEGGVSVINQFL
>Copia-5_Trm#LTR/Copia 76-5132 via tfasty with Copia-1_Trm, 1 frameshift. Misses C-term perhaps. [Tremella mesenterica]
MPPKQETFEFVNGAVKPVLNGKNFFGWHQAVLDAAYAGGYVDILLSKSKKPVDPSIRSTEITIKKEPAVEPAQVPLPSEA
EDKGQEGDGGKSDEDKKPEDKKAGDEEDVIEVDEKGKVISMDQRRKEFLLWEKRNQEALSLLLRSVDEAFHWQINGMELA
SEAWSLICDAHQFKQASVITDLRTELSKFYLSDGGDMQEHLRRFGTLVERGIKSGLPEFATDTARCDILVGSLPYSLKDI
RRDFHNLPSDKQTFRALHAMYLEEMRAREVSETREKDAASNGNILYAGKAQRGRGGGRGRGGFRGRGGRNNGAPKEEKQH
GGKGTAPGSCWNCGKPGHWRIDCPEPSKKEKGTAATAAREKKGEKGVPMAMATYEGWQLLQQYDEKHNESTWVVDTGATH
HLTYDKSLLSDILPLKIPMILNGVSENGTLTAKHSGTVLSTTPSGKVFKISDVHYVPGGKINLLSPNVIMNKGWTVSFMP
SGGEIKGHGQVFKMKRMGSLWVVHLPHHKVEEGSALASSGEPPIPSKTLNWHESLGHVGVTSIKKLEKANLLKIEPTEPP
FTGDQCDVCMISKSTRLSFTDVPVRATKPLEILHCDLAGPLQLSYQGSKYYLSIVDDFTKLVVCMALQNKGEATQCMILA
VKRLENIAKAKVKIIRTDGGLEFSGGVWDRFIGDNGIIHQITTPYTPQLNGVAERMNRTLKEMVGALLRQSGLGMKFWQY
ALFHASGMLNRCRVGEDGITVYERFFRRKPNLADLHPFGTDVYVHIPSQVRGGKSDLTLPKAWKGRLVGLPFTSAGYIVW
NPVTDSFTDTRDVVFPRKGGSQLENVVDMEKDAGSAVEKESGTERQAIGQPEEAEDDIPPPETITTRTPPLIPESTTPPV
QSTTPIPSESTPAEDVQEKEQSVVEEPQQPVDPSEDATGETEDQELPVQQAIEPRRSTCQRKPRILLLEGPQLISSDEQE
EGWVLTVQGSILDNNPKTYEEAIRSHISKEWKKAMDAELGSIQKAETWEDTVAPAERTLVGSKWVFKTKRDQHGAILKYK
ARVVAKGYSQIPGQDFDETYSPVARLTSLRIFLTIDAQEDLELGQMDVVSAFLNGKLDKPIFMQSPPGYQLKRGCDSVKL
HKALYGLKQAGRTWWEALDEHLQTLGFRRTAQDWGVYRFTGKKKAYIIAYVDDLLIAAEDINTVNLIKEELSQRWEMTDA
GEPQFMLGLKITRNRSERTICLTQTAYIDTLLEKYGLTNVRSVITPFDSKTKLQANGPACKEGITRYQQLVGSLMWTAIT
TRPDLAYAVGVLSRYCAGPTEAAWDAGIHVLKYLKGTRTHGLVLGGKGGTKLLEAWSDADWAGDLDDRKSTSGYVVKYYG
STVSWGTVKQKGVALSTTEAEYMALTETIKDVTWVPSILNKFGIKTETFLPVLIHCDNQSAIALSNNPGHHKSSKHIYLR
YHFIRDHVEQEKIKLEYVETELQEADIFTKTVGGTVHWRHAENIGIRPEKVVTESGTAAVVTYGTILMAVGTKNKKGRKQ
ERKKGCWNCGEGGHYRHDCPHMKVEEDNSPTEDELTTHSTIMTHKKTIEQDGTSLSIHVTVQAPKEKDRERMYEEKWGHL
AKKETLTTHRLGKHHIPIKERLSNHTITSHPYSSHNPTTAKRLVDRITPITRPIQRELEDTWRQVNSPGPSSVNWRTLDK
KVTRGN
>Copia-5_TC#LTR/Copia 116-4059 via tfasty with SHACOP4_MT, 76.2% SW:3054, 1 frameshift and 7 stopcodons. [Theobroma cacao]
MTTPNITHQPPPVFNGSNYGVxAVKMKTYLKGYNLxNAVEQDVEPQTPRENALAAQVKQYEEEVAKKFRALSFIQSVVST
DIFSRIMECETAKAAWTKLQEEYVGTSRTRHMQAQNLRRHFDMMRMKESKSVKEYIDQILKLTNQIKLFGEELKEVRVAK
KILNSVPGKFEPTIASLLQSKNLIDISIIEIVSALQATELRISTRDEALGEKAFLAKGKGKAKAEAFAKKNYKDKDKKTA
QSGQSSNKKNKFKPCSFYKKRIHTDDYCWFRPDAKCKICSQSGHTNKVCRNRTIEDKPAQTIESLELAEEVLFMAQSDSE
SDCGNCEWLLDSGSSRHIAFSEAVFIDLDKNHRSRVRIGNGGYLQAYGIGKVRIPSSTRHKYISDVLFIPSFAQNILSIG
QLLENHYVLLFEDKACRIYNPSGAYLMTIPMRNRCFPIKPKHICLQVEEQSVSLIDLWHRRLGHCNYKTLEQVSNSGMLD
KLPKLSNNALICSVCQLGKISRKPFPLSSTNRTRSKLELIHSDIGGPLSEESLNGNKFYLLFIDDMTRWSWIFFMKFKLK
VFTLFKNFKTRVGLETGHKIKTLRTDNGGEYTSNEFTQFLNQQGIAHQFTAPYTPxQNGVSERKNRTVMDMSRCLLYQKR
MPQKFxTKAVKTTVYLQNLLPTHALNNQIHFEAWYGFMPSVAHLKVFGCVCYMHIPDILRNKLSEKAESGVFVGYSTQGK
AYRIYLPSKNKVIVSRDVVFDEASSxNWNEPQPPLSFPRQHVQSFASDAxLEIQEDESINDLPVRGTRSLEDIYQNSLVT
IEEPSCYIEACKDPVxFKAMQKELQMIQKNGTWSLVDRPVDRNIIGAKWIFKKKLNADGSLNRCKARLVAKGYSQLPGVD
YGETFAPVARYNTIRLLLGLAAALKWNVYHLDIKSAFLNGILEEEIYIDQPKGFELLSRENKVYKLHKTLYRLKQAPRRW
YSRINDHLIHRGFVKSQNEAILYTLESGNKFLLIVSLYVDDLLVTRNCEQALQNFKSQMQAEFEMSNLGLMRYFLGLEVH
HLRTGIWLSQQNCISKVLKKFQMSDCKSVSTPSIANKKICADSGNQLEDPSTYRRLIRCLLYIYASRPDIQFSVAFLSRF
MQAPTNQHMIAAKRILRYLKKTEFYGIHYTKIVDFALCGYTDSDFAGSSEDAKSTSGYLFIVGNGPFSWNSHKQFKVAQS
SAESEYVAAIEATNQALWLRKLLVDIKFEQKFPTDLFIDNKSAIAIAKNPVWHGKTKRINVKYHAIRNTVEKNEINVQYC
PSELQLADILTKPLQKSRFEALRTKLNLSIASVKG
>Copia16-NVi#LTR/Copia 144-4191 via tfasty with Copia3-NVi, 1 frameshift.  [Nasonia vitripennis]
MEGELTRIIKLRDINNWSIWKFQVKVISKSSGVWDVVSGTRTCPGALATTAAADAITENQKSIEKWNKDDSLAQKIIVTT
VSEQAMLHIINCDTAKSMWDNFVTVYEQKSLATTHMLQQKWFTITKEPSDDIATHIAKLEDIAHRLKLAGETMNDNMIIT
KILLTLPPSYDHFINAWESTPETERTKANLTSRLINQEMRESSRDETALASHKYNKRGNFERPAADKSKNKWKPGKCHNC
NKPGHWARECRSKKSNDKENYGTKSTESKSKPHGNALMIDAFASIQSSDNHTNLWYKDSGASSHMTHHKDWFLNYEPFKK
PTWVRIGDGSLLEACGSGDINVLSYNGNSWDPSHLSNVIYVPDLKYNLFSSNVTMDKGLMLSSDNRTCKFTKGGKTIVIG
ERIGNLFVMKLKVEDASNAPHQAMVASEHSLATWHEKFAHQNYQRVKQILSQRNIVLKDKNEPFCDACAIGKTHRLPFHG
SKSETSRIGEIIHADLCGPMQEASLKGSKYFLLLKDDFSKFRTVYFVTAKSDVYNCIEDYVKKAEKHCPKGVKIIRTDNG
LEFVNQNVSKLLNKYGIEHQRTVAYTPEQNGAAERENRTLIEAVRSILAGKGFEKKFWAEATNTATHVMNCTGTSRIPNK
TPYELWYNQEPKIQDLHIFGEKVYVHIPKEKRRKLDDKGKPGLFMGYEQYVKGFRILILETNKIEIARDVVFSGIAEPVN
KTRIEENYDIILYLPKETDDEPEREREENLPDENDREENVPDEPEIGLEENLPDNHDREENVPAEPEREAEENLPVRRNL
RKKHECSKPKRFDDYIDPDEIDIEELFITDIQEPLTFHEATNCPDADEWKRAMQEEINSLSKNQVWTLVDAPKKETVMES
RWIFKLKRDANDNIKRFKARLVAKGFSAEEGIDYKETFSPVIRFDSIRLILTIAAKERLVLRQFDVKTAFLYGNIEETIY
MKQPHGFSDGSKKVCKLLRSLYGLKQSSRCWNQKFTSFLSKHDLKATNADPCIFVSTNENKRLILGIYIDDGLIAAQSQA
VVNELLAELKQEFEITHSCVNIFLGLQIECLKDGSFFVHQSSYVKKILEVFNMNNANSVTIPADTNQEMCVSMHSGDQTK
ATNAPYREAIGKLMYLSTGTRPDITFAVNRASRYMENPNKIHWNAVKRILKYLKGTQTLGLLFSPTEDDQLYAYSDADYA
GEVETRKSTSGSLITLGNSLITWNSRKQSTVALSTTDAEYIAACETTRDIMWIKKLVREVCNTKHVDTILHLDNQSAIKL
IKNPVFHKRTKHIDIKFHYVREKFEQKEFELEYINTHKQLADVFTKALAKMQFEQHRSFLLHDLQTVIN
>Copia15-PTR#LTR/Copia 22-4617 [Populus trichocarpa]
MANAHTENDSQSFNDTNPKNKYLNFSDPFNPFRIENGDNPAAALVSELLTADNYVSWSRAISRALRAKNKLAFVNGTLSK
PTDISDPLFEAWERCNDLVVSWLQNYVSSSVKSSLALVEDSRVLWLELRDRFTHQNGPRIFQLKRDLASLSQNQDNISTY
FGHLKALWDELAIYDPLPDCVCGKLKILHDRYDRDCVIQFLMGLSDSYSNTRDQIMLLDPLPSLNRVFSMIQQQERQHLM
IPSIKSPDLMAMMAKPFFNSSKNFSKATSQKTNRPYCSYCKLPVHSLENCFKVGNADPPQCTHCNMTGHIAERCYKLHGY
PPGHKLHGKTKGIAATITQSRALSDGDHEEDSTESMMLTRSQYQQLLSLLHSKETSSAMASLSVTQPSSSSPTPHVSNSR
VSGMATCFSTSTHSSHPTHISPWIIDTGATDHMICCTSLFTSITATVSYQVKLPNGQDVPVTHIGVVRLSEHLVLTHVLC
VPSFNFNLLSAKQLTQHHSCCLIFLSNACFFQDLASWTTIGMGEVRTGLYHLLRSRVSPSALVDALPHLHSSTSFPSASA
THTTSLCDLWHYRLGHIFLSRLALITDPIITHNRTFHNPIPCSICPLAKQRRVSFPTSAHSALNNFDLVHCDIWGPNSVI
AVDGSRFFLTIVDDHSRTTWVYMLRNKSDTRSCFMAFYSLIETQFHTKIKIIRSDNGAEFRMTDFFQTKGIIHQRSCVDT
PQQNGRVERKHQHIMNIARALMFQSHLPPQHWTDCVLTATYLINRTPTPLLHNKTPYESLFQTPPQYKHLRVFGCLAYAS
TLSHGRKKFDPRGRACVFLGYPFGVKAYKLLDLQTDQIFLSRDVHFHESIFPFHSSFSPSVLPSNSITHPLPSSLPSSIS
IPTSPSSPPSLSSLTPSPALPANQSSSQNFLAPGSPPPTPSPPQTFISPPTLSPATVASPPSSVSPFRRSTRTRRAPEYL
QDYHCHQTTLTPPISLLNQLLCSPSGTSSPLHTTISYQHFSPTYKAFSTSISTHIEPKTYKQALKDPGWCKAMDTELAAL
EANQTWQLTDLPPGKVPIDCKYVYKIKYNSDGSVERLKARLVARGFTQLEGVDYHETFSPVAKLVTVRCLLATASVKGWH
LHQFDVNNAFLHGDLHEDIYMNKPPGYIKGSPTQVCKLLKSLYGLKQASRQWYSKFSNVLFAAGFSQSKADYSLFTRDIN
GTFVVILVYVDDILVASSDIAAVHELKSIFHRHFQIKDLGTLRYFLGIEVARSSQGIYLCQRKYTLDILADSGTLGSTPA
KVPMQQNLNLTQTTGTPLSDPSVYRRLIGRLLYLTVSRPDICYSVNNLSQFMANPTDAHLHAAHKVLRYLKGAPGQGLLF
SSSSSLHLEAYCDSDWASCPDTRRSISGYCIFLGSSLISWKSKKQSVVSKSSAEAEYRSMAVTCAELTWLKYILSALHVQ
HFQPVSLHCDNQAAMHIAANPVFHERTKHIELDCHLIRDQIQAGHICTRYVSSSNQLADIMTKALSSSVLNFHLSKMGVV
NLYTPSCGGVLE
>Copia19-PTR#LTR/Copia 47-4534 (1 stopcodon) [Populus trichocarpa]
MEDPFKMDNAEGINRSCNMSEGEPNPNQRLGSVLLNEFNYLPWSRAVSIALGGRSKLGYVNGHMRPPNSSSQAYEAWQCK
DQLVMSWLLNSMENHIAEIFSYSESSFELWEAVKEMFGNQNNAARIFQINRNLANLQQDGKTYVQLLGTLKGMWSELALN
RPHTIDAAELRKHEEEDKIFQLLASLGSDYEDLRSRILMNPDLPSLTSVCATIQREEARTKVMNSDSKNSLSESRAYVVN
RSMNNDRPFKGKRTELKCHHCHNIGHSIGRCWILHPELKPDFGKKKRSQRSYNTKSHVAAAHFTSTSSSNIENFSTNSSA
LLNEFAAYLKENGDTTMTASAFDSVALLGKFAGFLANSAHLSQENTEGIFTAFKTALVASIVHDFWVIDSGATDHITNKM
TSLYNFEGFSSPTHVSIANGKHVSVKGKGKIKLMSNSIESSILCVPSFPFQLLSIGKITRTLNCRVIFDSQQVLFQDLAT
KKTIGEGFFFKGLYYFSSHPQNNGYHQVSALSSFHQEQLLWHQRLAHPSDIVLTKLMPNLDLKNIPCDTCHLSKSTRLPF
MLSSSKSNKMFDIVHSNVWGPTIESFDGYKYFVSFVDDFSRVTWIYLLKFKSEVMHVFQNFHMLVMTQFFTKIKILRSDN
GTEFMSKHMTQYLASHGILHQSSCVGTPQQNGVAERKNRDLLEKTRALMLHMHVPKMFWSHGVLSAAYLINRLPSRVLQF
KSPLEVLQKQPPNLSHLRVFGCTYFVHIQNLHRDKLDPRAAKCVFLGYSSTQKGCKCYYPPSKKLLISRDVRFEESSLYF
KNENQLDDLKELFPLPNATTDLASSVDRLVVANDSSSFSDVMATDEGGASPVNTHFEHKTIDSQADESSDHDRHLSTTAT
DIHSDSRVVIPIISDSGDGSANQSPQPHPSVIPITTDSEEVSESESANHSPFPQPRRNPTRHRAPPTRLQDFVTYAARHP
ISNYLTYQHLSTEHTAFLIAISDVHEPQNFQEANSKDEWQQAMHDELQALDQNNTWSVVRLPKDKHAVGSRWVYKTKFNS
DGSIERYKARLVAQGYTQTFGIDYKETFAPVAKMNTIRVLLSVAVNNRxLMCQMDVKNAFLHGNLEEEVYMKLPPGHPQS
SDPNLVCRLHKSIYGLKQSPRAWHAQLSAVFEDNGFKRSNADSSLFIQLGPTTKVMVFVYVDDLIIVGNDGNTISHLKTT
LQKHFPIKDFGSLKYFLGIEMVVSHKGLFLNQRRYVLDLLKDAKMTDAKPAPTPLDSKLKLETTSEPLRSINYYQHLVGR
LIYLTITRPDITYAVSLVSQFMHAPTVFHLCLVKRILRYLKGSAGRGIVMTNHGHTQITGYSDSDWAGNAIDRKSTTGFC
MFVGGNPVSWRSKKQHVVARSSAEAEYRAMASATCELIWLKGLLSDQGFCSSTPMTLFCDNQAAMHIAANHVFHERTKHI
EVDCHFIHQQVQSQIIKPCYTRSYDQLADVFTKVLTSAHFHRLLSKLGSINPLDPA
>Copia28-PTR#LTR/Copia 236-4240 (3 stopcodons) [Populus trichocarpa]
MSTADKFVQPSIPRFDGHYDFWAMTMENFLRSKEMWNLVDEGIPTLAVGNAAASEAQRKSVEEIKLKDLKVKNFLFQAID
REILETILDKRTSKAIWDSMKQKYQGSTKVRRAQLQALRKEFELLAMKEGDKIDSLLGRTLALVNKMKTNGEAMEQSTVV
GKILRSLTPKFNYVVCSIEESNDLSVLSIDELHGSLLVHEQRMQGQQIEEQVLKVVYDERSTRRRGRNMYRGGRGRGRGR
QTSNKALVECFKCHKLGHFQYECPDWEKRVNYAELDEEEELLLMSYVELHNSKREVVWFLDSGCSNHMTGNKQWFVELDE
EFSHSVKLGNNLRMPVEGKGNIRLEIEGITQVISEVYYVPELKNNLLSIGQLQEKNLAILMQNGECRVYHPRRGLIMHTQ
MTSNRMFVVLANIVLHASSTCLNVSSNHLGDLWHKRYGHLSFTSLNLLQQKELVQGLPKFQVPTSVCTSCMKGKQHREII
PKKSNWRATQQLQLIHSDLCGPITPESHGNERYVLTFIDDMSRKLWVYFLHEKSETFMTFKSFKNAVEKESGLSIAGLRT
DRGGEFTSKEFTEFCRIEGIKRQLTTAYTPQQNGVAERKNRTILNMVRCLLEEKQMPARFWPDAVKWTCHILNRSPTSAV
KNKTPEECWSGVKPNVDYFRVFGCIGNVHVSNPQKLKLDARSQKCVMLGYSEESKGYKMVDPITKKVIVSKDVVFEEEQS
WDWRKTEEDKNDMLDWGEVDADIYASSDEENETEESLEEGESSQSNDAAISHGSIPSNAAAPALPERRVTRAPAYLQDYI
RGENFEAEEEVQSFSLFMVSADPIYYEEAAKMKxWRDAMDMEIGAILKNETWELVDAPKQAKIIGVKWVYKTKLNENGEV
DKCKARLVAKGYAQEKGVDYNEVFAPVARWDTIRTVIALAARNGWTLFQLDVKSAFFYGELNEDVYIAQPPGYEINGEEK
KVYKLKKALYGLKQVPRAWFSRIEGYFAKEGFERSSYEHTLFIKKEEKNRILIVSLYVDDLIFTSNDSIMVSKFKESMKK
EFEMTDLGEMKYFLGVEIRQSSKGIHIGQKKxAEEILKRFGLENCNGVKNPMVSGSNRLTKQEDGKKADATLFKQIVGSL
MYITVTRPDLAYSVCLISRFMANPMESHMMAAKRILRYIRATTDLGVFYRKGCEDEMLAYTDSDYAGDLDDRKSTSGYVF
MLSGGAVAWSSKKxPVVTLSTTEAEFVAAASCACQCIWLQQILKQIGGTERKCVKVLCDNSSTIKLAKNPVLHGRSKHID
VRFHFLRNLTKDEVIDIEHCGTNEQLADIMTKPLRLELFEKFRAALGVNSAEEIN
>Copia23-PTR#LTR/Copia 71-4624 [Populus trichocarpa]
METPTEMTEQEQQNTVATLDDLTTRMAQIVTQNQTQTQTPSVIYDTTAASIGIKLDGTNYALWSQIVEMYISGKDKLGYI
NGDLPQPELNDPHFRRWRTENSIVKGWLINSMDPSLIGNFIRFSTAKQVWDSIATTYFDGSDTSQVYDLKRRVTRMKQSG
ESIETYYNCLQGLWREIDFRRPNPMECAADIQRFNDLLQENRVYTFLDGLDDRLDNIRSDVLQLKPFPTVEQAYAYVRRE
AIRQTVMLTNNGNSTAAAMVSRGGKTYLPRQQTLQINRAGMAPTAGRNLHHLARPKGQVESEGSGCSHCGNMKHTRETCF
KLHGYPDWWSELKTRKQRTSSGDTGQASLANTKPQLSLAPLVESGEAATSLPNDQGNTESKNDWIVDSGATDHMTYCSDD
FSNTTELRRTGISNANGVVYPVTGAGTVHISTSLLLTNTLLVPSLSNKLLSVSQVTEDLNCVVLMYPKFCLFQDILTKEI
IGRGTKREGLYYVDDFNIGNVNTVRRSLLTKENQIWLWHYRLGHPSFSYMKYLFPELFLNLNYAEFKCETCILAKSHRVS
FPISLNKSDTPFALVHSDVWGPSPITTVSGIRWFVTFVDDCTRMTWLYLLKRKDEVFDVFCMFEAMVHTQFSANIQILRS
DNGGEYVNHNFVEFFRTKGILHEMSCSQTPQQNGVAERKNRHILETARALLFGAQVPGRYWSDSITTAVYLLNRMPSKAL
DFKTPLQALSQYVTLPSILLLPPRVFGCVAFVHIHKHLRTKLEPCAVRCIFLGYGSNKKGFRCYDPKTKRLYITMDVTFL
ESEYFYPFTAFTSPLQGEIRNEDEKWWTIGDVENIEVNEVTGAIGDVENNEGTGAIGDAKNNEVTGAIETVVMTSTVTDA
AENTEGTLVGTTENAENVVIIDEDDEGTESMASDSISKSPSLLVPDNDNPLHEDDPEVISHTTPTGNILNSSNSYHLPFR
QNRGRPPSRYSPDTKGKKAKYPVSNYVSTQRLPMPLKAFTYKLSSGHIPLGIHEALADPKWSQAIQEEMTALEKNQTWEI
VTLPQGKRTVGCKWVFSTKYKADGSIERHKARLVAKGYTQTYGIDYQETFSPVAKLNTVRVLLSIAANLDWPLHQFDVKN
AFLHGDLEEEVYMDIPPGYNSNTPGTVCRLQRALYGLKQSPRAWFGRFSVAMRKYGFQQSNSDHTLFLKRQRGKVTVLII
YVDDMIITGDDEEEIKRLQKQLSGEFEMKDLGGLKYFLGIEVARSKRGIFLSQRKYVLDLLTEVGMLDCKPADTPTVQNQ
KLGVYPDQEPADKERYQRLVGKLIYLSHTRPDISYAVSLVSQFMHCPSKDHMDAVSRILQYLKSAPGRGLMLSKNDHLKV
EGYTDADWAGNVFDRKSTSGYFTFVGGNLVTWRSKKQKVVALSSAEAEFRGMAKGLCELLWIRRLLSEIGFTPKSRMNLY
CDNKAAIAISQNPIQHDRTKHIEIDRHFIKQNLEEGVICFPFVRSEGQLADVLTKAVSNKVFQDSLSKLGIEDIFAPT
>Copia13-PTR#LTR/Copia 217-3893 via tfasty with ATCOPI1, 1 frameshift and 3 stopcodons. (and an internal deletion) [Populus trichocarpa]
MVTSSQLQIIQSPITSLLPAISIAITVKLDDTNYLVWQFQMKILLESHGILGFVDGSRKCPSRFDTDSDIEGVESDDHQI
WKMHDRALMQLLIATLSSTAISYVIGCISSHDMWVQLQDRFSTVTKARIFQMKSELQTIKKGSEPVSQYLQRIKDARDHL
SAAGVYFEDEDIVILALNGLSSDYNTFRCMVRGRDNVLSLKDFHSQLLAEEATIEQTHSSSPFVSAMHVQRxCYHRGNFS
YQGRPPSINLSAMAATFPPSPKPFWVADTGATTHMTSDLSHSGPDAITTAGGSGLSISSIGSSVLPIPQCSLQLHQVLHV
PKLSQHLLSVYRLCKDNHCRFICDDFGFWIQDKITGNVLLKGLCSNVLYHIPFSVSSSSHTPFQLALASHRNQSCYLGQQ
VQTSLWHKRFGHPSNSITSTLLTQSQIPFTSDPTKSVCTTCFEGKITKLPFPYPAVKSIHPLxIIHSDVWGPALVMSVDG
FRYYVSFVDECTRYSWIFPMINKGEVYSIFVHFHTFLVTQFFATLRIFQSDGGGEYISTNFKNYLHTKGIVHQMSCPYTP
EQNGLAERKHRHIVETVVTLLQTAHLPNKFWFHACVTSIYLINRLPCQLLRLKSPFFLLYGSSPVIHHLRIFGCACFPLL
RPYNSNKLQPKTSTCIFLGYASQYKGYICFSLHTNRIFVSRHVLFDESLFPYISVPMPAVSLSLHVSAVSPSSPSVSLHN
SVLPLVSSSPSFSSTPSASLPSLSPGLSLQPSSDLHSPAHSPLPVDPDFHPERLCVVLPLSPMNLHPMTTKSKSGISKKK
AYSATVQSLALSQVEPRSFKIASATVEWQSAMQEEIEALHAQGTWDLVALPPDRNLVGCKWVYRLKKHADGSIARHKARL
VAKGFSQEEGIDYGETFSPVVKPTTVRLVLALAAHFNWSLRQLDVKNAFLHGILHEEVYMTQPPGFVSKAHPSDFVCRLR
KSLYGLKQAPRAWNERFTSFLPSLGFQASLADSSLFVQHSSHGTLILLLYVDDIILTGSHSSLFSSVIAALSQEFDLTDL
GPLHHFLGLQISYDLGLHFHPGPLHLQAYRDADxAGDPNDRRSVSGSLVYFGSSPISWASKKQHTVSRSSTEAEYRALAI
TAAELAWIRQLLCDIHIPLLLPPLIHCDNISAISLASNPVFHSRMKHLQIDYHFVRERVIMGDLLVQHVSSNDQFADILT
KGLSISLFQHHCSNLMLGSSQPAIEG
>Copia5-PTR#LTR/Copia 530-4663 via tfasty with ATCopia78_2-4077, 3 stopcodons. [Populus trichocarpa]
MTTENAHALIPKLTKDNYDSWCIRLKAFLGSQECIEIVQYGYDEPESKEAEDTLQEAEKQVLKANRKKNNKAKTIIYQGL
DEAIFEIIASVETSKEIxEALQxKYKGADRIKKIRLQSLRSEFELLQMKASESISDYHTRIMVIVNQMRRNGEALTDAWI
TKKILRSLDPKFDFVVVAIEESKEVDKLMVDELMSSLQAHKQKIVKRNGDKAIEHALQVKLSLKDRYKQRETSTSGYTTQ
GRSPQRRRGFQQFQGRGSWNTGFRGRGGRNTTRGGQGQQAFTPRGRGGGYNNRDKRNIQCYRCNQFGHYSTECQGKAPLE
IREHANYADEDANSRGATALFVQQGLDENQENIWYLDSGASNHMCGQRELFGDLDKTKQGLVTFGDTSKVPFKGKGSIPI
KLKNGDSSYIADVYYVPAIKQNLISLGQLMERGYTFYSKNCHLTIRDNNWRLIAYVKMSKNRMFPLNIQYDAAKCLSAIT
NSEEWLWHLRLGHLNFTSLKMLASKKMVKGMPHIDHLDEVCESCVLSKHHRSSFAKEVNWKAKRPLELVHTDVCGPIKPM
STGQNRYYLTFIDDFSRKTWIYFLKRKSEVFNCFKEFKAIVEKQSGYKIRTVRSDQGGEYTANDFEAFCTQQGIRHQTTP
AYTPQLNGVAERKNRTILDMVRSLLKAKKLPKQYWAEAVSCAVYLLNRCPTKSLQVVTPQEAWSGHKPSVTHLRVFGCVA
YAKISDARRTKLDDKSEKCIFVGYGERRMGYKLYNPITKKVIMSRDVIFEEDKTWQWKDDQEAVKWISTDLILEDEVEVP
PVLAEGPILPADEPQSPVHRFPVFNRRNTPESSSASSSEGPRRMRNVDELYDSTQVMEDTTLFCFFADSDPLSFNEAITE
EKWIEAMDEEIHVIEKNDTWKLTYLPENKKAIGVKWVYKTKKNAKGELQRYKARLVAKGYKQREGIDYGEVFALVARLET
IRLMILLAAQHRWKIYQLDVKSAFLNGFLEEEIYVEQPLGYSEAENESKVYKLKKALYGLKQAPRAxNTRIDRYFQDNGF
EKCPYEHVIYVKKGADGSILFACLYVDDLLFTGNNPTMFEAFKKSMVQEFEMTDIGLMAYFLGLEVVQKEEGIFVSQSSY
AKDILERFKMESCNPVSTPVENGVELRKSKVRNVDPTYFKSLVGSLRYLTCTRPDILYGVGLISRYMETPDQSHLNAAKR
ILRYIKGTINEGMFYTSSKNFNLVGYSDSDWGRDLDERKSTTGFVFFMGNTSFTWSSKKQSIVTLSSCEAEYVAANLAVC
HLIWLRNMLKHLGFPQEDPTEIYIDNQSAIALAKNPVYHERSKHIDTRHHFIREHVKNKEVKLISCNTNDQIADIFTKPL
KGEIFTRLKFMLGMTSLD
>Copia3_AG_gag#LTR/Copia 62-1543 [Anopheles genus]
MERLGIAKLNGGNYSVWKTKVEFLLIREELWQYVISDGPGNTTASPTTEAIGAVWKSGDQKARATIGLLLEDNQLNLIKD
CKTAKATWEKLRGHYEKATLTSKVSILKNICEKRFSDGEDIEQHIFEMEELFDRLTLTGEELSKSLQVAMVLRSLPQSFS
VLTTALESRSDDELTLDLVKTKVVDEVAKRGNRGCCDSVLKTIVKKNQMLCHFCQQPGHKRKDCLILMEKRSRDLKQSEG
QHGMKRSQLCVQTTDEETLEQEYSFTMRGFTANSWIVDSGATSHMCIDRSCFVELDERYQQDVILADGTTARVEGIGSCR
ITTLSPEGKTSRVTLNDVLFVPKLETNLVSVKKLTAKGAVILFDMSGCRIVKDQKVIALATISNGLYSLKTRMQNVLTRK
NARYRSIAKCLLMPMDLEYRNVQQKEEGLMLRKGELRKRKLRKGESCSFVHCKDRTMSSGSRIWVGCHGKDMFGRCEKSI
PRNNEFQSVCCRS
>Copia5_TP#LTR/Copia 286-6063 (one stopcodon) [Thalassiosira]
MAENPNPDVFQDAQEQVDAIAQLTQLVIQQTNTVNALLAALGNAQVGAPVAASASTFALTPGKVGVEAVIDYSTKHGSSV
YKEYKAALPTVWDLKGKGLVVFIQEFLTRAQDAGWTQGTMQVTKFNNADGTPIDLITEYGKIDVDTLKAQCDVFLLPGGA
NFQTRATQNNKLMAECLLSSVTASATQALIADRGQYTFDGTIYAPVLFKHMMKIATLDNKATSKWLRDQLKQMPAVMLEV
KGNIDDFFNTFDKWHTQLIGRGEDLDDALDCLWDGLKAAPCEKFSKWIQDKYDLHIEDDPTWGPITVEELTKRVKAKYNL
MVTNKEYGSASKEQAEIIALRAQIDALKGDLKLSVAPKGNSKGDKKDKKGGEKGGKEKKTKNTKAKGDKQRQKQEESWKK
TPPKDGEPTTKTVGDHTFNWCVHHMAWVWHRSENCDLGKKRAAEQNHVSYAAAVNSSPIETGTSSNFRALMSTLAQAALD
EExGFGPAWLTLHVISCLWCDAVAEAPNILFILPTVLLSLAMHFFCFAEVPYHRSKGRPPSKRKESRLRRRYRARHQYHP
PRVRKKKKWKTPPSPSASIALDPPLSCHYVWLFKIFKIFASIEILVRRALVVLAPRVLASCIAYRASALHDAVEVRFDSD
SFKIGIDNHASRTMSPSKDHFEDLILHNTTTTVGGIGSGLSIKGVGTFVFKIEDDDGGVHCIKIPNSLYVPGLKTVLLSP
QHWAQEARDHHPKPEGTVCSNTSKACVLYWNQLRYKRTVYFHRSTNTPVFRTAPGALSHRAFVSTFEAMEAPLQRKKEQL
RFRPALNATFLREQPDAATFLREQPDEAEFVAEETLLEKATQQPDPNADDDTVQISNTAPKEHEQQTIGCLTFDPAPRGE
LHDDQHYSAEDPQAELMRWHYRLGHLPFPRLKLLAETGEIPKRLAKVIPPRCAGCLFGAMTKVPWRAKGKQDTTIFSATK
AGQVVSVDQMISTQVGFVAQLKGRLTTQRYRAATVFVDHFSRLKFIYLMTGLSSEETVAAKKAFERFASNNGVRIQQYHC
DNGRFADKAFISHCEQQQQHITYCGVNAHFQNGIAEKAIRDIQEQARKQLLHARSRWPEVIHLALWPYALRMAVHLHNTV
PSLADGRSPLEVFASLAVGSKMRDNHTFGCPVFALQNALAAGNTIPKWSPRARLGVNLGPSPSHARNVALVLNLSTGLVS
PQYHCRFDDFFETTRYAKRDLSVGSTWQRLAGLIRVDRLPSLELHDNNAVSLAEATNIAETVLPPSENDAIEEEELFDAD
NQQHNDFDDVTTEPGDPNNPAETQTADSDSDTTTQTPTAGISSRGRRRKLSRRMAESVSQREFFGDRNMHYMASQSTVGL
NEAEDDRLHEEHLALQSLMSNPIAFHAEMMGDIMYFHQAMKQPDSEEFVKAVVKEVNGHIENNHWQLVPRSEVPPDAEVV
PSVWAMRRKRNLTTNEITKYKARLNMHGGKQTYGVNYYETFAPVVSWFGIRLLVVFAIVFKWSLRQVDFVMAYTQAPIEM
DMYMELPAGLSTKHGDSKSHVLKLLANLYGQKQAGRVWNEYLVGKLRSIGFEQSKVDDCVFYRGDVVFIVYVDDGMFLGR
CDRQLTSIIKELVDLGLDIEDQGHPADYVGVNIRKLQDGSYEFTQRAIIDSVIADVGLDGPNIATKPVPAKSTVHLHAHK
SSPAFNGRFNYRSVVGKLNYLAQTTRPDIMYATHQIAKYSSDPRKEHGEAIIYLVRYLKGTRHLGLKFKVDRTKGFECYV
DADFSGAWNRAFAATDPSTAKSRGGWIVFYAGCPIIWASKLQTQVALSTTEAEYIAMSMALRDVIPIMELVREMKNRKFE
VICTEPLVYCKVFEDNSGALELARLPKLRPRSKHINVCYHHFREHVRKGLIKIFPVSTDAQVADALTKALPQNSFVRHRR
HYCGG
>Copia7-NVi#LTR/Copia 122-4105 via tfasty with Copia4_AG_112-4080, 2 frameshifts.  [Nasonia vitripennis]
MASRTSSGVILSIDKLVGRTNYRSWAVAMRAYLEVEDLWNTIEAPQGGQLSTDAKKLQKARGRIILTVEPDIYAYLEDAK
SPKDAWEALAKTFDDPGANSKVNLFMQLSTTRYENCKSMEDYVARIIGTSQKLNAIGSKIPTDLIGALMLAGLPESYKPL
RMALTNSGQNLTADFVKTKLLEEAQCSNNGHEIQNEAFHAQVHSTHFAPQSSANRGRNGYHKRLGRRRNSNVRCYNCNKF
GHIASKCTAPIKKNKMHAQPPADEESEDEDVVCALLASIRSGDTHAANVGTALVDSKNTISAGTALLAVNQSKHTQADEW
ILDSGASKHMCSSRLNMTNIKHSRIKSVTAANQTKVSVQGEGNVALQYHGPTGERRVLLENVLLVPDLTVNLLSVSIITR
RGGKVIFAGPTCQIYNSKGIPILQGQRTTNNVYKITFQPRSAQTDTLRSDFALSVSIPTDIQLWHRRMGHLNEAYLKQLR
EAAIGVNFKNDQLYRCQTCIAGKLIQKPFKINNKRASAILELVHSDVCQMEELSIGRAKYFITFTDDYSRKTFVYFLKQK
DEVPDITMKFIKYVEKQTDRKLKRFRTDNGGEYVNAKLKTALAELGVKHETSIAYQPQQNGRAERVNRVLLEKARCMLSE
ANLPYKFWAEAISTACYLSNRSPKRCLGGVIPEELWTGSRANLSHFRVFGCEARAYISSHQRKKLDPTSRPAIFIGYSED
QKGYRLWSAEDKKVFVTSNVEFLEKELESSIKPAYFPVEFSDTMESNVDKVLAQEPINKENFRRNEESVTNENLRRNVEP
VNKESFRSNEEPVNKGNFRRNEEPVNKENFRRNEKPVNKENFRTTEEPANQEDKIRNKTPKKREIVKEAPANDDPMITRK
RKIQSNQDEVIKKSAKLTDRSTDLQPPLSNQPRPQTRSVTKLDQPRDLEDSEDELITPSCKSQRRKRKPKHLDDYVVYSI
VSEFGEPRTVEEALSGPESHHWRQAMDEEYKSIIKNNTWVLCNLPHGESVIGSKWIFKKKPAADGTTKCKARLVAQGFSQ
LKGIHYDETYAPVVRYTSLRLLFVYAVKRGLNVYHLDVETAFLHGDMEETVYLEQPQGYVQKNQKHKVCKLNKSIYGLKQ
GSRNWNRKLDSTLKELKLIQSYQVTCIYSYFNKKKCIIVALFVDDLMVFTDSIDFLDILKTGLQKICTLKDLDPMKKCLG
IRVNVDNSKGVIELDQTEYIESLLAQYGMSDCRSTGTPLDLKGDYSSSNHEAQHSILIRNSKFSVSTKHINRRLHFVSES
IDSGEISVSFIPSTHMIIDALTKAISQRKLRDFVENIGLKNEERRQY
>Copia6_VC#LTR/Copia 89-4195 via tfasty with Copia3_XT, 2 frameshifts and 1 stopcodon. [Volvox carteri]
MKIDKEDFYFSISTFHLLKEHVIGVLQRKGLANAISPVQATRDVVTDEQDQRALGVIKEFIRVLEKPLYARHAKAYDLWL
ALAAKYGQQTRAAKSLLVQRLTQFKMESSETISDYIARFQALRLEFAAIDISLADDEAVDHVLRGLPDTYAMIRTVIENT
TDVGRVQEVEMRIISKSRRLIRRPRSRPxREPTTSRGQAPHRRKDNRKCFYCKEQGHLVAKCPSLDSHIRHHHRRRRRLP
PPPPPQPFMRQRQQQPQVQPQAQGVRRRLVGVINTLGGMRLAPGEWLLDIGAEDHLTFTPEDVEGLKPVREGEGVVFEVA
DGRTVSSIGEGRAVFASFRGQTELSVPVHVVPDLQHRLFSVKALKRSFPDQVVEVVLSADCSYIAIDGIPAVDVFEENGM
YIVLAQPDAEWNRALSLHRFPKEKLDTLHRRMGHASLTRFDRPFFDDLVHSEPICREESLRPESKVCEPCVMGKMTRSPH
HSSTHKGERVLDLVHSDLCGPMPVTSLGGANYFATFYDDFSKYSEVRCVRAKSEVPAAVREVLTKWERQTGLEVRCVRTD
CGTEYVNDRLASFFSERGIVHEKSAPYTPEQNGAAERLNRTLLERVRAMQYDSGVPPELWGEAIMTANTLRNVCPTKGTV
QTPWELFTGKPPDVSKLRVFGCVAYVQVPKALRNKLDPVCVKGILVGYEPKFSAWRVWIPAEGRIRVSVDVVFDEGIMYS
VAYLLDSIEESLSSGTDDEGPRRAPLVEIEMNPVGGPAGDEGSDDEPGPLIDDDEASDWSESDSDDDGEVDEEASDGLVN
AGPSDAGPSNLGPSNTNNNLPLALGREKRFNAGVPPKRFAFRVEMEEESDDDVDIPESYEEAMASPYAEFWRAAMLEELE
SLRAKGTWSLVPKPKDNRSLDVKWVFSLKRDKHGAIERFKARLVVKGFMQREGVDFQEVFAPVSRHTTLRTFLSMVAGAD
MELHQLDVKTAFLNGDLEEEIYVKQPPGFEEGGPGIVCLLHKALYGLRQASRAWYDTLCEELVSMGFVASSADPSLFVRR
KQGEVVYLLVYVDDVLIASWSERAVSEVKAAIMRRFECRDLGEVSLFLGLTLKRDRANRVITVSQGRMVKDIVGLYGMAN
ARPKSVPMSPGTVLPNAAVEDRLDRERFPYSQLIGSLLYVSGCTRPDIAQAVGVLARHMSNPSRSDWKAAKEVVRYLAGT
SDYGLVLGGERADERLVGYSDADYAGCADSRRSTSGYVFTLHGGTVSWASKLQRSVAASTMEAEYMAVSEAAKEALWLRQ
LLGDLGYDLKPTQINCDSQSAIRLASNPVVSKQSKHISVRYHFVREQVALGTLVMVDCRSEDMVADCLTKPLPTEKFEKH
CIAMNVCKS
>Copia31-PTR#LTR/Copia 191-4211 via tfasty with ATCopia31_1-4050, 2 frameshifts and 3 stopcodons. [Populus trichocarpa]
MAEGNFVQPAIPRFDGHYDHWAMLMENFLRSKEYWSLIEIGIPTNTTGAEHTEAQQRNVEEMRLKDLKVKNYLFQSIDRT
IMETILNRDSAKGIWDSMRQKYQGSTKVKQAQLQALRREFELLGMKDGENIDDYFGRTLTIANKMKSHGERMEQIVIIEK
ILRSMTAKFDYVVCSIEESNNLAEMTIDELQSSLLVHEQRMKGHKEEEQVLKVMSEAREDVRFGGRGRNRGGFRGNFRGR
GRSWGRQSFNKAIIECFRCHKLGHFSYECPGYEKTANYAKLDCEEEMLLMSHVELHNSTREEVWFLDSGCSNHMSGNKLW
FTELDEKFRHSVKLGNNSRMAVMGKGCVKLKVAGAIQKIDKVYYIPELKNNLLSIRQLQEKGLAILIQHNACKLFHPTRG
LIMEIAMTVNRMFIMFAATPLNESVAFFQAGEESETQLWHSRFAHLSFKGLRTLYYKKMVEGLSPLKAPTKVYVDCLVGK
QHRENISKKSHWRASSKLQLIHSDICGPVNLESNSGKRYLITFIDDFSRKCWVYFISEKSEALNMFKMFKNLVEKKAGSL
VGCLRTDRGGEFTSKEFNEYCSMNGIKRQLTAAYTPQQNGVAERKNQTIMNLVRSILSEKCIPREFWPEAVNWCMHVLNR
SPTAAVPDITPEEAWSGVKPSVEYFRVFGCIGYVHVPHEKRTKLDPRSTKCILLGISEETKGYRMYNPETRKLIVSRDVI
FEENASWNWAEDNINTLLRWRGDDNSISEEEFEGNEDEEREQEQIEETENEVSAGDEVENMKKNIMSSIQAAAVRNQRTP
HWMEDYVTGAGLSEEEETQNMVFYTTAEDPHTYEEAEKNQKWREAMDNEIAAIERNDTxELTVLPNNSRKIEVKWIFKTK
LNEKGEVDKYKARLVAKGYAQQHGIDYTEVFAPMARWDTIRMVLAIAAQRQxKVYQLDVKSAFLHGELNEDVYVEQPLGY
EKKGEEHKVLKLKKALYGLKQAPRAWFSRIESYFLKEGFVRCPSEHTLFVKNQEEKILIVCIYVDDLVFTGSDERMFAEF
KAxMKQEFDMTDLGKMKFFLGVEIVQNDEGIYLSQRKYALEILERFGLENANSVRNPMVPGMKLMKNEDGEQVDMTRYKQ
MVGSLMYLSVTRPDIMFVVGLISRYMEKPTNLHMQAIKRILRYVRGSVNLGIYYKREAASDERLMAYSDSDYAGDQDDRR
STSGYVFMLSEGVVAWSSKKQPVVSLSTTEAEFISATHCACQAVWMRRVLEMLDCKQGTYTIIHCDNMSTIKLAKNPVMH
GRSKHIDVRFHFLRELCKEGVIELKHCNTQDQIADIMTKALKMDAFEKLRSLLGVCEMPSR
>Copia-1_DY#LTR/Copia 67-3929 via tfasty with DM1731, 1 frameshift. Copia-2_DTa very similar, with internal deletions. [Drosophila yakuba]
MSALYQIEKLEEKNYDTWKIQMRSVLVHSGLWSVTSGELTATNIPEGHSFVALDNKALATITLSVKTSQLAYIKNCSTAV
EAWNKLRDVHQPSGPVRKVQEAPQQTDGRSMSTYISEFVEILDGLAGVGIELNDELRTIVLLSSLPEQFEHFVVAMETRD
QLPTFEILTIKLKEESERKGIAEERIDNTKAFAATQRQNWQTKTYGQKKRKNIVCFRCGEQGHIKSQCRSASEGDSNRTV
PKNLVNRQSSLLHACDVNNLQNSMWCLDSGATSHMCCARELFIKFEKHTEQIGLADAGFLQAEGIGDVKIQTELCMLTLK
NVLYVPKMTGNFMSVSSAVQNRCKVTFDLEKAMVVQDGECIVKAKKIGNLYLFEGGRSGCFAMSAVDGILLHKRYGHINF
SSMKELVSKGMVRGIENIGLPENINCKTCMVSKIHVQPFPRTTCNRAKELLELIHADVCGPFPTLSLGGSKYFLTFIDDK
SRRIFVYFLRGKNEVLSKFMEFKNLVERQTGKQLKCLRSDNGGEFVNKQFDEYLRKYGIARQLTIPHTPQQNGVAERANR
TLVEMSRCLLVQAGLGDSFWAEAVNTSAYLRNRSPTSAVKSMTPMEAWTGKKPCVKHLKVFGSLAVALDKGPRKGSKFQP
KGKEYIMVGYSVAAKGYRLYDPAARQLVEKRDVLFDEHHAAASKDDVVLINLEELDEPCQRDGAEVDETVSDISVDTGSA
DESIDQYESADDNEELVLEEARRGPGRPKIVRTGKPGRPKKQYNILGALVSENVPIPLTCKEAVESSHAMEWREAMAKEY
DSLVANQTWQIADLPKNQRAIGCKWVFNVKRDKDGQIERFKARLVAKGCSQQFGVNYLETFSPVCRLESVRLMIALAAEL
KLYLHQMDVCTAYLNSDLRETVYMKQPEGYIDEKNPDKVLVLRKAIYGLKQSGRAWNEKLNSVLVDMGFISCNNEPCLYK
QSGQGNLSLILVYVDDILIACQSHEDLVEIKNSISQSFECVDKGPLSHFLGMEIEREGDLGAITLGHSQYIKDLLRTHGS
ELCKSAKTPLDAGFQIDCTSDKCKKVDPTVYQSVVGELMWLALTTRPDILHSVSKLAQRNQNPHAEHMAGIKHILRYLSS
TVDVKLHYQQCGQSFCGYVDADWAGDRLDRKSYTGYIYLLAGGPISWRSEKQRSVALSSTEAEYMALSAAFKEAIVMRRL
ILEIGCGDDNTPIVVYGDNLSAQALTKNPVNHSXTKHIDIRYHFVRDVVKEGKVLLKYKCTTEMIADILTKNLPKTKHEL
FTEMLNLY
>Copia-1_DSim#LTR/Copia 153-4055 via tfasty with Copia-1_DYa, 80.8% SW:3438, 2 frameshifts. [Drosophila simulans]
MSITVNIDKLDESNYDIWSMSMRSVLIASDLWDAVCGSVKEPDDAPEPTKWNTKDAKALSSIILHLKPSQMMHIKSCVTA
KEAWNILEKIHKPVGPLIQMQLYQKLIRLKMKQGDNVTDYVNSFVEICGKLEELDILLGDNLKVIMLLTGLPKSFENFVV
AMQTRDNSPPFSTVKLKLLEEAERLRVNEECEEVFEKRAYVTRVEQSTSKSNTKNNGSYERRQKQSVKSFECWSCGQRGH
KAVNCRERKTENNKKQRSYSAVCYGSSVSEMSRGTWCLDSGATAHLCCERDIFSEFKEHKERILLAGNNCIESVGRGTVI
VKWREFEIKLVDVLYVQELQYNFMSVSKAIEKGFCVKFSEKGASVIENDGTVILKAEKRENLFLFENAKNKCYNAQNKNS
SQLWHNRFGHLNFRSLNKMIKENMVKGMKLNFNENIACESCAKGKISVKHFPKASENRAKEILGLVHTDICGPINKKSNG
GARYFVTFIDDKSRYVTVYFMKTRDEVFEKFKEYKSFVENQTGKKLKILRNDNGREYLSGLFEQFLINHGIKRQLTVPHT
PQQNGVAERANRTLVEMARTMLLCAGLDESFWAEAIKTASYLRNRAETTTLPGLTPFEVWTGRKPYVGHLRVFGAKAIVL
NKTHKTKFAPKGEEHILVGYSETAKAYRLYSHEKRKMIEARDVMFFEDDLGRSGLPGETELKLVELQGKSTLVVGELSNN
PPNVEPEAGDDELASIEQEPEDVDPKNEQLEEKEAQRAPGRPKLVRSGLPGRPRKEYQMLNVLTTEDIAVPGSFEEAMNG
DHSDKWKASVQKEMDGLRANKTWSLVDLPKGEKTIGCRWVFALKRDKNGHIERFKSRLVAKGCAQRQGINYFETFSPVAR
YSTIRLVIASAVEHGMFMHQMDVSSAYLNSELHDVVYMRQPEGFIDEQFPRRVLRLHKSLYGLKQSGREWNERLNAVLLE
IGFTPCPSEPCLYVRKVDDNLGLIVVYVDDLIIASSNKDDLNEIKLLISKKFDVVDGGDLKHFLGMEIERESETGSIKIG
HKQYVETLLNDYGMQNCKPSSIPLEAGHQIKCDDEGCDRVNKESYQSLIGSLLYLAMTTRPDILHSTVKLAQRNADPHKE
HEAAAKRILRYLRGTSEKKLHYRRTGQSIHCYVDADWAGDSSDRKSYTGWAFFAAGAAFSWESKKQSIVALSSTEAEYIA
LSSAAKEAVYIRKLVAEMGFGVSRLVQIYSDNQSSQCLVKNPRFHARSKHIDIKYHHVRDIYKDKIVSISYVPTEDMIAD
VLTKNLSRIKHNRFIKLMGMF
>Copia-1_ST#LTR/Copia 31-4245  [Solanum tuberosum]
MHKAEQDRRLIQFLMGLNEVYTVVRGNILMMNPLPSMGQAFSLLIQEEKQREFKPIGRMPTDSISLNANSLDNKSHGGRT
FRTNYQGNSYVGGDSNYAGRSSSGGNYYSGSSSGRNAIVCDYCKRTGHTRDKCYKLHGYPQGNNNQNFRSGSYNGGQSFR
QQSPNFKGKRVVANVYGAANDMMNTHGEEQSQGNNHSNVSFTKEQYGQIMNLLQHFQNENVGEDAGANNASSVAAGSMNF
AGIVVCFSSTDFGNPSCKCFESSANLWIIDSGASNHITFNRTSLINIRTLPFPILVSLPNGYKVKVTEFGDVPVTSNITL
HQVLYVPSFKYNLVSVHSLTTSMKCIVLFTNALCLLQAPSVKRPQVIGNSRDGLYFLCSKCLKTSNRIDTSQICCCFPNN
SLFSCSSKNKTCNSSSVKPSTADKSHSVHNSVPLVCTSPSNNIDVLFDHISCNNSGDNVDLLWHNRLGHVPFVKMKSITA
LPATFSPKQPFSCNICPMARQERLPFNHSTSQTKSIFELLHIDLWGPYHVSTYDNYKYFITLVDDYSRSTWTHLLSTKSN
ALQVLKNFIGLVENQFNTTVKNIRTDNGLEFTNNETHQFLLSKGIIHQKTCPYTPQQNSVVERKHKYLLETARALLFQSK
LPIRYWGECVLTATHLINRLPSSHLKNKCPYELLYKRKPNYSQLRSFGCLCYPTVPKVLRDKLEPRTTPHIFLGYLFGTK
GYKVMNLATKKIHVSRDVIFHENVFPFTLSAESSSFPSVLRSIPSTDYTELASCDNCVSDYNNVTDTIPIHPPDHTIEDP
IAQPPPVLTITSPTPPPHVPSTVVQRKSHRVNKIPQHLKDYIVNIPSLKPVDINTQNTQNHPTSLTALFTKHHHVSPDVI
ASNSQALVENVCHDSEPSSYEEASLSPAWQKAMTQEFEALYANNTWDLVSLPADKQAIGCRWVYKVKHRADGSIERFKAR
LVVKGYTQQAGIDYTETYSPVVKMTTVRTLVACAVKKGWGMFQLDVNNAFLHGDLHEEVYMKVPQGLEIPNPGLVCKLNK
SLYGLKQASRQWYAKLTEALSFRGYTHSHYDHSLFYRKAGPLVVFVAVYVDDVILTGTDTTEIVQLKVYLDDTFKIKDLG
RLHYFLGLEILDTTEGVLISQRKFVLDLLREYDCFNYAPLSSPLDPTVKLRAKEGPPLSDPTFYRKLIGKLNFLTNTRLD
IAFSVQQLSQFMQDPRAPHLQAAYHLLRYLKKDPTLGVHLSMDPDCTVQAFCDSDWASCPDSRRSVSGYLVLLGNSPISW
KSKKQETVSLSSAEAEYRSLRKVVGELTWLHRLLTELTVPISSPIAVYCDSQSAIYIARNPVFHERTKHIEVDCHFVRSK
LQEGLISLHHVSTSDQLADILTKALTGVKHSVILHKLAVKSSPPT
>Copia-1a_VMo#LTR/Copia 61-3888 via tfasty with Copia-4_CP, 76.8% SW:3584, 4 stopcodons. [Vasconcellea monoica]
MSYSSSSIGPPQFSGDNYHVWAIKMETHLRALSLWEVVEEDSDPPALRDTTTLNQIKKYEEDVAKKPRALSCIHAAVSDS
VFSRIMPYRSPKQAxDKIKEEFDEGDRSRKMKLLRLKCEFEMLRMRDDEVVKQYASKLSNVVNKIRLLGEDFPESRVVEK
ILVSLPAKFESKISVLEEIGDTDKRTAAKLINKFESQEQRTNMREEHTSEGALYSSQVRAKTGTENQQIETxENQELEQA
NLTEVTYEQTESLLVASSEEIVKDQEQWIIDSGCTNHMCNDEKLFHNLNTMEKGEVRLGVGKRVRVEGKGNVSVKTNKGQ
KTIYDVMLVPSLQQNLLSVPQIINKGYSVTFENKRCLIVDTKGQLVASVPMINKSFTLKMREAEHNVHHTTLEDADVWHR
RYGHFNMPALHLLKKQEMTYDLPALTNKxSFYGTCQVGKIHRASFPDRANWRAKERLELVHSDICGPMSVESVSGFKYFS
LFIDDLTRMTWVYLLRNKADILNKFFNFKLSIEKESNSTLKCLRTDNGLEYNSSEFKFFCISNGIKRQLIAPYSPQQNGV
AERKNRSVVEMSRSLLTDKNLPKLLWAEAVNHYVYLLNKLPTVAVEGKTPFETWCGRKPSSRHLKIFGSVCYSHIPEARR
RKLDDKAEIGIWLGFSHEAKGYRIYNPHTEKVMIKRDVVVDENSYWNWELKKIESNQNNMKFNSDIVSVSIDTAPASIDT
APASTPITESDEDDSEEETDNEEGNPRSKLRSLADIYATCNFVSKEPSSFEEAFTQSVWKKAMMEETQMIQKNCTWTLVS
KPEGKKPIGVRWVFRIKLNSDGSVNRYKARLVVKGYAQEAGIDFGETYAPVARHETIRMLLAMAAQFQWTVMHLDVKSAF
LNGDLQEEIYIEQPKGFVKQGMEEHVYLLHKALYGLKQAPRAWYEKLNSYLLICGFERSKNEATLYVKQDEDGTKLITVV
YVDDILVTGDDKLKILKFKEQLEDKFEMSNLGQATYFLGIEIQQSQQGTFISQGKYAREILKKFKLNECKAVFTPLVPNS
KLTKDEHEIKAEEGMFRSLIGSLLYLTATRPDMLFAVSFLSRFMASPRQTHMAAAKDLLRYLKGICNLGLWYESSKEGIL
QGYSDSDxAGSLEDAKSTSAYVFSFGSGIFSWSSRKQESVAQSTAEAEYVAATGAANQAVWLRKMMNDFKLNINTPTVIY
VDNKSAIAIAKNPVMHGRTKHINVKYHAIRDLERNQEIKLIHCVTDNQLADILTKSLSKGKFEEMRFRVGIVKTNP
>Copia-1_UM#LTR/Copia 772-4439 via tfasty with Copia16-PTR, 2 frameshifts and 2 stopcodons. [Ustilago maydis]
MNHCTGRCYENASSTHFTRKSAPPTNRSHSRTSQTCSASIRPNTSHWAPPSSLEMPRPGSPRSTKPRHRLTTLRPSPASR
AQRKRQQTCLRCEQRGHSRQQCKATVILPPPSEYRKRVFTAGSQVLKAPLIGDAQVQTEATDEGARVTLDREGGQIYLAD
GIPLRMVKNRKRRLFEFQGETWKEHALVASPDLFMGVEENFASAERKPKLTATELWHERLGHPGRDKTRKLLQLLKNERD
IKLDAETPTNCAGCIQAKSTKARHGAGSGERADAPLDLVHIDLIIDSSRETEFTCTLVAVDDYSKYVYVQPLVSKADAFL
ELQRMVSFLELQTGRQLKALRSDQGSEWTKAEARIWARDKGILWQMTVSYDSKQNGRVERMNRSLQEKMRALLIQRKLPA
RFWPYALRTAAFLINLTPNVDDKIPYAQIFSKTPTRFIRLLRVFGCLAWVNIPKAKRNRQKIDERSVPAIFIGYSLERKG
WLFYSPNYSPNIFWSNSAKFMEVQSWAERTAWRPIDISPPHAPTHEEDVPDFGYTEIDQFDETANAPIDDFVDIDAIPDD
ADGMLPPPETTQEAAPVSSDGAQASREVTPVSSVGATDGTDTRDVLQPAGPSVDLPFRDNEAILSEKYAAIQNSKNEWGH
MINFFAPQLTESIQDGFPERPTDAQPDDADPETWPRHLRRAPLSVNLRTGHALAITTSPAVNLSPTLNQAKRGEDWPLWQ
EAMRSEIGGLEANDTWIVADLPPGQNLVDSKWVLKIKTDANRVPTRYKARLVARGFTQREGVDFDEIFAPVAPLEAIRGI
LAVATVFDWEVDGIDVVQAYLNSTLHHDVYMKPPAGVNVPPGQVLRLVKGLYGLKQSGREWNLVLDAHLRKIGFHAVPSA
PCFYSRGEGGSRTILTCYVDDILITSPSRAEVDRTKAEIAEKWNIEDNGPVKEFLGIKIDRDRKNRHLSLDQSAYIKEMA
NNWLANDVRKTAKSPFAKYFEVGPDMACDAKQAKKYQELVGQLLWISNTVRPDVAFAVGTLARYMSDPIEPAWLAALQVV
RYLNFTADYRLILGPYRNMEQPVVTHTDANWASDRNTQRRSTSGFMTFIYGCPVSWKSHVQKIVALSAVEAELVAASEAA
RENMFFAHLLRDLRLWxGQTTPPSPIVWAAAxVSKDPAKHWKLKHIDTRYFFVRNAVQDGDIAIEHIGTAENAADILTKP
FQPEPLRKAVNRLGLVRPLRGG
>Copia-1_DPer#LTR/Copia 137-4386 via tfasty with Copia, 2 frameshifts and 1 stopcodon. [Drosophila persimilis]
MERNKQHIKPFCGEKYSIWKFRIRALFAELEVLQVVDNIMPNEVDDNWKKAERCAKSILIQYLGDAFLNFAAGDISARDI
LKSLASQLAARKRLITLKLSSEMTLSSHFVTFDETVSELLGAGAKMDEMDKVAHLLQTLPSTYNGVITAIETLSDETLSL
AFVKNKLFDYETKLRNESTDTSSKVMKAVVxNNNNFNNRKTFGSRNTRQKILFKGKARSNIKCHHCGKEGHMKKDCYQFI
RLNQNKENYKHNKQAQLAASGHGFAFMMRKMKKSDQINNELGFILDSGATDHLINDDSLYADCIELEQPIKIAVAKEGEF
LYATKRGIVRLHNGHNITLEDVLYCKEAAGNLMSVKSLQQAGMSIKFDCGGVSISKNGVSVVKHTGMLDIPVVKFQAYSV
DARNKNNYRLWHERLGHISNAKLLEINNNNLFNDSNLLVNLKISDEVCESCLNGKQARLPFKQSKDKSYIKRPLFVIHSD
VCGPIKPVTLDDKNYFVIFVDQFTHYCVTYLLKYKSDVFNVFKDFVAKSEAHFNFKIVNLYIDNGREYLSNEMREFCVNK
GISYHLTVHTPQLNGVSERMIRTITEKARAMVNGAKLDKSFWDEAVLTATYLINRIPSKALGDCKMTPYELWHNRKPNLK
FLRVFGSTVYVHNKIKKGQFDEKSFKAILIGYEQNGLKLWDVIKGKVIVARDVVVDETNMLYSREVKFETDFPKESKERS
QQEFLNESKESDQLNFPNDSTECGILNESKECDQFYLPNDSTECGILNESKECDQFYLPNDSTECGILNESKECDQFNFP
NESTECEILNESKECEKQNFPNESRKRKTDFLNDSKELYIPNESKDCEKADQPDNCREENKDTNIISRKSERLKSKPKVS
YKEHDKSFNKFILNAHIMFDKVPNSFDEINFRNDKSDWEEAINTELNAHEINNTWTIIKKPENKNIVDSRWVFSIKYNEL
GVPIKYKARLVARGFTQKYQVDYEETFAPVARIASFRFVLSLAVQFNLKVHQMDVKTAFLNGTLSEEIYMRPPQGVLCGA
GHVCKLNKAIYGLKQAARCWFQVFEQALKGFDFVNSPVDRCIYILDRGDIKKNIYVLLYVDDVVIATRVMDRMNNFKNYL
SERFRMTDLNEIKHFIGIRVEMFEDKIYLSQAEYVKRILNKFNMDSCNSVSTPLLNKLNYELLNSGEDCDAPCRNLIGCL
MYIMLCTRPDLATAVNILSRYSSKNNAELWQCLKRVIRYLKGTIDMKLIFKKNTSFENTLVGYVDSDWGSNEIDRKSTTG
YLFKMFDSNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKSLLNSINLKLDRPIKIYEDNQGCISIANNPSCHKRA
KHIDIKYHFSREQIETNEISLEYINTDNQLADIFTKPLPAGRFAELRNKLGLLQEE
>Copia44-PTR#LTR/Copia 79-4374 [Populus trichocarpa]
MTTESPSPIIHVQTENSGFNAGIILTETNYDTWSQIIEMQIAGREKLDYIIGDSPQPDAKDPYYSKWYAENQKIKGWLLT
SMTPEIMKRYLRLRTAREIWSALAKAFYDGSDETQIFALNQRAFSIRQSSRSLPTYYGELVEIFQELDYRDKVKMRDPED
IIMYKAAVDKLRIHIFLNGLDAEFEQVRGEILRMDPSLDLECTYAYIRREANRRILLTSDLTTSDYVAMLARRNTPPVRH
SGSMVTSRSFDIGNKQASSSRYCTHCGDTGHSKSRCYDLIGYPEWWDPSKAPKRKGKTSPATSSVSTAIAEMSSPNTNAT
TLHISSESPGKPFDKPTPIGSCAWIIDSGSTDHMSFDTSSVSKLKPSEKYVVSTANGTQATVVGKGSFSLNKLNLNSVLI
VPSLNFNLISVSQITTSLNCVVIFWPDHCVFKDIKTRKTIGCGTKKGRLYYLDLTSSSSSALAQSLSVTSSTSTSNIWLW
HKRFGHVSFGYLKHLFPELFLNTSPPLFKCETCELAKSHRVPFHPSLNKSPLPFTLIHSDVWGPAKVPTLNGSRWFVSFI
DDHSRMTWVCLMKTKQAVCSLFKQFYSMVATQYKTSIQVLRTDNGGEFVNHEMKQFLQCQGIIHQTTCPYSPQQNGVAER
KNRHLLEMVRATLFEANMPLHYWGESLTTASYIINRIPSRSLDFHTPFDTLNHSLSSPLIPNLPPKVFGCIAFVHIPKHT
RHKLQPCALRCVFVGYGLHQKGYRCFHPPTQKLYVTMDVKFHEHQMYFPATETTNQGEESFNIQSLSHQTENISHSLPEP
ETPEQEPVEPEHMDAVIEPTTLELQPCDQPNIAEATVPQQQSSPLDASIPHESPLTDESQVNLEPPLRILPNRITRGIPR
VSYEPVRTSTPKYPLNNYVSYHRLSKACESFANQLSTVHVPNSVQEAIKDPRWKNAMNEEMKSLQRNATWEVIDLPAGKK
PVGCRWIFSVKYKADGDIERFKARLVAKGYSQTYGIDYAETFAPVAKINTVRILLSLAANFDWPLHQFDVKNAFLHGNLQ
EEVYMELPPGCQLQVEGSKQVCKLRKSLYGLKQSPRAWFGRFTNSMKAFGYQQSSSDHTLFIKHKEGKLTILIIYVDDMI
VTGNDSVEKESLQTYLSREFEMKDLGPLKYFLGIEVLRSRHGILLSQRKYTIDLLNEVGMLACKPSDTPAAENVKLSAHS
NQIPANKEQYQRLVGRLMYLTHTRPDLAYSLSVVSRYMHSPSEEHMKAVMRILQYLKSSPGKGIMFTKGDTLNIEGYTDA
DWAGSIDDRRSTAGYLTFVGGNLVTWRSKKQGVVARSSAEAEYRGMAKGVCELLWIKNLLQELKISSTFPMKLYCDNKAA
CDIAHNPVQHDRTKHVEIDRHFIKEQLEAKIIAVPHVRSQDQLADILTKAVSSKAFHQVLDKLGMKNIHAPT
>Copia37-PTR#LTR/Copia 228-4355 [Populus trichocarpa]
MATDKYVQATIPQFDGHYDHWAMRMENLLRSKEYWDLIETGVSSAVEDGAGAVPTEAQKQLQIKDLKVKNYLFQSIDRTI
METILDKRSAKSIWDSMRQKYQGSTRVKRAQLQALRREFEVLQMKEGEKVDEYFARTLTIVNKMRVHGETMEQVTIIEKI
LRSMTFRFDYVVCSVEESNDLSQLTIDELQSSLLVHEQRLNRHFQNDEQALNVSYEGGRSRGGRNAFRGRGRGRGRHGFN
KALVECYKCHKLGHFQYECPSWEKGAHYAEINEEEMLLMAYTAHDSSNSTWCQTAPTNSKETMWFLDSGCSNHMTGDKKW
FSHLDETFRQFVKLGNDTKMAVMGKGNIKLRINGTSQLIGDVFYLPELRNNLLSIGQLQERNLAILMEHGECKIYHHKRG
LIMSTQMSANRMFILLAERETQMQTQVLIPTCFKTTSESPADLWHRRYGHLHFKGLSILSRKQMVKGLPHLHESSTVCTV
CMTGKQHREFIPRKSMWRATQKLQLIHADICGPITPESSSHKRYILTFTDDYSRKLWTYFLNLKSEALAMFKKFKCLVEK
ESANVICCLRTDRGGEFTSSDFNEYCSSNGIVRQLTAAYTPQQNGVAERKNRTIMNMVRCILAEKLVPKIFWPEAVNWAV
HLLNRCPTFAVKDMTPEEAWSGFKPSVEYFKVFGCIGHVHIYDKHRQKLDDKSHRCIFLGLSQESKAYRMYDPVSAKIIV
SRDVVFEEDKQWDWSTIETENQTLTWGDNAETEWQHADHPAREHDNVEAEQLVDNNDELNVQPAFEGDDNAEEEPQSDSN
TTGDSSGVADANSPGIISSSSEDISSPAQGRVRRIPAYLQDYVTGDGLSDSDEESNFMLLTASNDPILFEEAAKHPKWRE
AMDLEINSIEKNGTWELTTLPYGAKRIGVKWVFKTKLNENGKVDKFKARLVAKGFSQKFGIDYTEVFAPVARWDTIRMIL
ALAACRGWDVYQLDVKSAFLHGELNEAVFIEQPQGYEVKGAEYKVYRLKKALYGLKQAPRAWYNKLESYFIKEGFERCPS
EHTLFTKKMEGKCLLVSVYVDDLIFTGNNVEMFERFKNSMKQEFDMSDLGRMKYFLGVEVVQHRGGIFINQRKYANEVLE
RFGMRNCNPVKNPIIPGFKLAKDEGGVSVDATTYKQMVGSLMYLTATRPDLAFVVSLVSRFMERPTELHQQAVKRVLRYI
KGTTELGISYQKGGEEKLAAYTDSNYAGDTEDRKSTSGYAFLLSSGAVAWSSKKQPVVTLSTTEAEFIAAAACACQSIWM
RRILDELGFERSKCTDIFCDNSSTIKLSKNPVMHGRSKHIDVRFHFLRDLTMDGIVKLEFCGSKDQLADIMTKPLTLEVF
TRLRELLGVCTTPILN
>Copia-1_AA#LTR/Copia 102-2492 N-terminal half of protein.  [Aedes aegypti]
MAEQRLPGFPLTKLNNHNFQSWKFKMEMMLVREELWHVIAEERPDPVTDTWKKADAKARATIGLCMEDNQTSLIRSCTCA
KDAWKSLKDYHDKGSEVYLLKKLTRLELSEDGDMEQHLQSFTDLVQRIADVGDEVPPKLQVALLLCSLPDSYDSLATVLE
QRPRNELTIDLVKSKLLSEAEKRREKLGNTAGSSEKALRADYWKNRGGDREVGKDTRACFHCKKPGHIKRNCRILQREIS
SSQDSSRKDEELCSGLQQKETAKAKQAQSVMEGPIAFMTGQGELSDWFVDSGASRHMTGNESFFAELKSTIGVSVLLANG
EKAEAKGIGSGCIVGIDSVGAPVDIQLNDVLFVPNLTSGLISVSALARKKFSVDFSANQCEIKNKAGIVVVVADRCGSLY
RLCTPDRMLCDQGKGRKINSRKSRVTNKVEKAQKRLDVVHISLSDLMVNTPSGNKHYLTFVDEFTGMTFVYFLRKKSDVC
FKMMDFIDFCKTKCGEMPKMILQDGGKEFMDTDLQRVLDNEGISVSFSPPNSAVAQKKSRYLKKIAECMLIDSKLDRKYW
GEAISTATHIQNRSTSKFKSISSFERWFGQKPNIGNFRRFGSKALVRISATMQEKALIFVGYSNQNQAYRFLDLKSGGIF
VSRSVKFMEGAGIRRGHPPDECLQESIVILEPLIPDEERLVRQEELSQQRVRVKQVADESVHPEDDLEYQADDTLSFESC
EEVLYSDDQVQTGTEKAIEPQPDSSRPGRSTKGVLPTRYKDYVVSPFPKKQQKPVVLHDDFKACSVDEIWPSTAQSN
>Copia-1_DEl#LTR/Copia 83-4095 via tfasty with Copia-6_DWil, 71.7% SW:2585, 3 frameshifts and 1 stopcodon. [Drosophila elegans]
MSGAFIKIEPLCADNYDTWKVQMRAVLVKNDLWQYVDGTKECPSGSGSTSAADSAVWKTYDEKARADILLSVSPSELALI
EGCNTAKRCWMKLQEIFMTRGPVRKAALLKKLILSRLCEGGNIREHINETFEAVKKLREIGVAIGDDLLAIILLYSLPDT
FETFRCAMEARDDLPRPEFLRVKIxEEAEARKNRHVPDEQNAMFAKRRKDRSGKQTRNKETRKCFNCNRVGHISKNCWNK
TNGKGEEPDHREKAKRAEESTFACQANFCANKAGAWCLDSGCTAHMSSDTKLFANIKEIKKTLHLANDETTTISGVGEIK
IESTTKERRRIITLTDVHYVPDLRQSLLSISKITDKGYEVHFRKDEALIVKGKNEIWLRAQRRGNLYYLDSVEHQSNNIE
KIHLSNINGRHYRMGHLNERDLKNMANEGKVHGMNIKENEKIPECEICVSEKQVANSYKSSPGSRTTELLEIVHSDVCGP
MRKESMGGCKYYVTFIDDYSRYCEVLKVLKAFVDYKAAAENLTGKKIKMLQSDNGTEYCNREFDAYLAWNGIKRRLSAPY
TPQQNGLAERQNRTLVEMARCMMRQAGAPATFWAEAVNAACYIRNRCPAAGLSGGIPYTYWTKKIATVAHLRAFALEKGI
NKGKFDPRSVECILVGYAATSKAYRLYVPERRKVIISNGVKFLSLPGFSTHFEEFYTEPNSEEISIEMTSTKIKQDDLEA
DPSVDSPQEPTISAQRRGRGRLKTLRSGFRGRPRKIYQQPNVEHSNEDDAESEELQSDEPYEECEIANALFDDPVNIAEA
KSSDDADNWIKAIEDEFMAHLKNKTWDIVEKPDDRKTIGNRMVFRTKDTGGDEFKKKVRLVAKGYAQRPGEDFHETYSPV
VRFSTIRLLMALSVEACMEVHQMDVVTAYLNGELEEKIFMEIPEGFRDFVTGMATGAPIGSHGRPLDRNSTETAKNWMHS
MSRCQKPVCVLRKALYGLRQSGLRWYQKLTAKLVDSGLIATKEDPCLFVKRRGEKILLVTIYVDDLLLASNHTAWIDETK
SNLTEAFEMKDIGTVNTCLGMEFLQNVKENWIFISQEQYINKILSRFEMSECKAALTPIEAKSNLKRPDVADEAEMKKYP
YQNLIGALMFLSVSTRPDITFAVNFLSQFNANYNGEHWKAAKRVLRYLSGTKGLGLLYLPSKENLYGVADADWGANLSDR
RSYSGQAFVLSGAAISWEARKQRTVALSSTESEYLAMSEAVKESIYLRSLLTSIGRGCDSIRIFNDNQSAQKLAKGFGYN
PRTKHIDVRHHYIQEKQRSGDIQIEYLPTELMPADVLTKGLSHNKHKTCLRSLGVTEI
>Copia-1_BG#LTR/Copia 368-5428 61.4% sim to Gypsy-26_BG, SW:2639, [Blumeria graminis]
MADKIPIKLWQTDNEKWGKKFDAKALSKMTEEQAEIYVNTHAEYAMRYWETFNIKDFELWEKFGEQFDEWTEEIFKHMND
NLLENFRDFLRSRGVWVKKQRGFSRAKALCNLIQEEKPTEWSNEEINLMMTAGNFNSARNPMFKQPQFIPDSKPKLPSTI
PTPGNKFYADQDKQIESSQSVPKIPINQTVTRALIDLGKFYHDEEIKYGGGYYDILDVKLDIFKDNCRKVSLSEKFYHEA
FSTILKGGARLFYYNVLLLAGLTTNFSIMIAQFKEHFETPQFQQAYLKEWREITFQGIREKNLDRSVQDCLQILFDKLQL
LQQALGGTYVMDETIKQQLIIACKGVRGTQLIHFSPAATYEGVCSQLRAVLNTEQPENPVGQYPAIATEQYIDYNQAPEY
LYDEQYYFDRTYRRQNNGRRNFRGRGGGSRAQGIHSQYRNGMGSSEHGTNSRGNFNNDGRRGYHERNYKKVCWTCGKEGC
FSSKHSNDEKQSGWNRYRNQQHFFQQDSYPNLSDYGHFLIHYEGMDGLPSSDMTTPDDLGQYLAGFSIEDTEEGNHDNYL
TEIGTVDAIKTVFLLNNQSTRHALTKQDIFHEPRKEKDVFLSVDRYNSGIFQGIIPDTGASGISTAGIPQLLALQKLDPT
IKLDISTKGKHNIKFGKGSAETVGSAVVKTPLGPIIFHVVAANTPFLFCLKDMDDMGVKYDNLENVLVQGSKKVPVVRKW
GHPFMMTYNMEETAAFCHLTETELRQLHRRFGHPSVRRLSEILERAGHEVDSVIIKRLTEFCHQCQTNSKSPGRFKFTLK
DEHNFNYAIYVDIMYLEGKAVLQVVDSATSFQAARFLTDQTANGLWNCLRYCWIDVYQGPPDNIITDAGTNTSSSLIRQN
AGLMGTEVKVVPVEAHHSIDKVERYHIPLRRAYQILRDELKNDVISKEMILQMAVKAVNDSAGPNGLVPTLLVFGAYPRM
TSFDPPSPSIVQRAEAVRKAMKEVRRTIAERQIKDALGMRNGPNTLPILKLPIGSEVLVHREKKGEGWMGPYTLMSMEGE
TCRIMMPGGPINFRSTSVKPYKREPAEHPTNDHDVNPDDIVQDVVDIPYNPPMTNPTLPAHQGRSPESSCADYLKAPRKS
SRLQNRLQYVNLVDFEQLDDEPDNGNFISHKERADLVLAQKLREEGKITTPGEPFEASDKLEIDGLNASGVFEYVQYEPE
GAHKGIRLFKSRLVHEVKGKATNMPYEKSRLVIQAFNDHGKSAILTQSPTIQRSAQRIIQALAPSLMLLQDQDIHIWLRD
ISQAYTQSTSCLNRIIIATLPAEIALQYPERTIMVVRKPLYGIPEAGTHWWATYSTHHKKELEMQSSTYDPCLFVSTNKD
EFGVVAMQTDDTLIVCGPKFAAKEDERLRKAGFKAKEKEKLIVGKAIDFNGCILSIANNNVLIRQKKQGEKLSLIDLKDE
NYAQLYVEQRARGAYIATICQPEAAFDLSEAAQHKQPTITEAAILNKRLDWQIKNQNRGLDYIPVDLATAKIFVFVDGSF
ANNQDCSSQIGYVIMISNEVSRENEFEITGNIIHWSSTKSKRVTRSVLSSELYGMVAGIDMAYSINSTITMILKQLELSA
LPIIVCTDSYSLYECLVKLGTTKEKRLMIDIMALRQSYERREMQEICWINGNDNPADAMTKSICNTALKKFMDSNKLNIR
VEGWVKR
>Copia-26_MLP#LTR/Copia 77-4603 via tfasty with Copia-72_VV, 61.1% SW:1473, 1 stopcodon. [Melampsora larici-populina]
MSTESSAPSPDPSLTDSEDETFTSISDSGTEIPGNSNMADKGESKIFGTPIQQFVQKLTSLLAKYDIETKLSDGNFPAWA
LEVKQVLNVIDYQKYITKLNFKAPSLTDEQHIKVKLVVSIWMMSLMDKNNKIRVQTMLKLRGCGDDDDDDEEDDDVAYEP
ALIWRFLKNHHQKISEAGLQTIEDAINDMKILSTDSFKEHCDKFNNLIADFVKYRGRISSASAARKLIKTVKSRITENVS
ENIYTKVDPLTREGVVQYLIDYEARNGGFSTPAIVEASHSNFSTSAAQSGGNYRQNKPRCSESKCISTTHDDDKCFAKPK
NHAARDLWIAQMEAKRSRPQYTRPNQTSTTSNVSGLRQVTLPSASLAVASDNPFASLHVHFDDSNDISASASALSTFESS
HTVFDEDSPAANVVNESNGLWALYDTGATHYMFKSDKLFTSDSMTRVEDSSKRLKLAGGDASLAVHSTGTVQLKSGSGKM
FELNNSLYVPDLSQNLLAGGAMLRKGVQVLVHPNDTNCFSLVFKGEALFNGVFASNNLMYVSLEPVSPITGSTALNTSTE
DLTQLQHRRLGHLNNRYLKIMCNHRSVEGLPTNLSQLNHCDVCSLSKNHKIPHSSTRPRASRHLENVHVNLSGIIRVKGL
KNEMYYTMFCDDYSSYRHIYFMKDKTKETVFDIFRAYIALAERQTCKMIKQFTLDRGGEFLNELLGTELRERGITLHLTA
AHTPEENGVSERGNRTISTKARSMMIESGSPLRLWVQACQTAVFLTNRTVTAALEGHKTPFEAWHFRKPSVDHIRVFGCL
AYSLIRKEIRGSKFNPVSSKGVLVGFEEDNFNYHVYDLDSSKITITHNSTFNENVFPFMTENQTATEVPPVSTELPNLKL
RFFDEESDEEDVEVTTTINSTPNTLDPPAQKSTPTCVADAQPPQPSSPPAPPRRSGRIKGPVKYSAITIGENLEESTLTT
AWELKQLFDCVLPKSNLVTSAHDVPRSYSKAVNGPEGTKWLAACKKEIKAMYDKKVWVLVDRPATSNVVRGLWLFRKKIT
SDPENPFKFKARFVAMGNTQLEGEDYFETFAPTGKPTSLRLLIALAAIFGWEVHQMDAVSAFLNSYLDEVIYVEQPEGFR
VPGEEHKVCKLLKSLYGLKQAPKCWQDDVMDFLLSVNFIQCEVDHCIYIRSEGNLFTAVYVHVDNLAITGNDISSFKKEI
SQRWEMEDLGLATTVVGIEIKRINEHKYSICQESYTLKVLExFNSLDVKPASTPFTANLKLYKPDLQEIEDFASRKLPYR
SVVGSLMYLAQCTRPDLAHAVGTLSQHLDWPGFQHWDAACHVLRYLRGTVNLGIVYFRLANVEPVKGLKSEVCPQALCDA
DWAGDQDTRRSTTGYVFILANGAVSWKSRLQPTVALSSTEAEYRAITEAGQEVLWLRTMLAKLGLEDANHTVLESDNKGA
IHLTNKSIFHGRTKHIEIHYHWIREVVNSGQISLKHCPTKFMIADLLTKPLGTQQFTNLRKLMGLKPIV
>Copia-24_MLP#LTR/Copia 65-4641 via tfasty with Copia-27_GM, 63.5% SW:1408, 1 frameshift and 1 stopcodon. [Melampsora larici-populina]
MSSPHPVLADADDKSEDSTSDTSSSKTHKPSSQEPLPNLLSTSLSNFTRMTDKDELKFFGTPLQQFVQELNSILSKYTID
NKLSDGNFPEWSLAIKRVLKIIDYHKYLSKYDFKAPSLTDEQHLKVKLVISVWLLGLMDSQNKTRCQTMLKLANCNDSED
ENEDSEDEDDFDYEPYLIWKFLKNHHQRISEAGLQTIEDTISDMKILSSDSFKVHCDKFNNLIADFVKYKGQISSASAAR
KLIKTVKSQINENVSENIYSKVVPLTREGVVQYLIDYEARNGGFTTPAIIEASQATVNHHFEAARTTYSIPQSSAAQAAG
GNQRRFRPKCTEHRCISTTHTPEKCFAKPENRSARDLWIAQMEARRKGNHGNRFRNQSQTPSVNGIKQVSLPSASPAFAS
SNPFASLHIFLDEDSVSVSASASETFEASHTVFDDDTPAANLVNKSSGHWALYDTGATHYMFKNDQLFASMSKIEDSSKR
LKLAGGDVSLAVHSTSTVQLKSGTGKMFELNNSLYVPELAQNLLAGGAMLRKGVQVLIHPNDSNCFSLVFKGEALFNGVF
AANNLMYVALEPVSPTFDSKASSTQAEDVTQLQHRRLGHLSHRYLRLMCKHKSVQGLTEDLTQLKHCDICSLSKNTKIPH
SSTRPRAFRHLENVHVDLSGIIRVKGLKNEMYYTLFCDDYSSFRHIYFMQSKSKEEVLNVFKTYLAMAERQTCVKLKQFT
LDRGGEFLNDLLGTELCERGIVLHLTAAHSPEENGVSERGNRTISTKARSMMLESKMPLQFWVQACSTAVFLTNRTVTAA
LSNNRTPFEVWHFRKPLVQHLKVFGCLAYALIRKEIRGSKFNPVSSHGVLVGYDEDNFNYQIYDLTSHKIIITHHATFNE
DLFPFGNDPVTRLSPLPPTSKGVNIRFFDNDSDDEHFEEVLEPTDSDNRPEVPTVLDPNPPAIKVSPDVRRSGRVKQVVK
YTATAVCDDIKVSSLIAKWESAQHLNCGVPECDMVTTTHDVPRSYSKAVSGPEGDEWMNACKKEIQAMRDKKVWVLVDRP
ENCNVIRGLWLFRKKPTADPNKKFKFKSRYVAMGNTQIHGIDYFDTFAPTGKPTSFRLFIALAAINGWEVHLMDAITAFL
NSDLDKEIYVEQPEGFVVPGEEHLVCRLLKSLYGLKQAPKCWQDDVEEFLISINFIQCEVDHCVYIRCVDNLFTAVYVHV
DDLTITGNDILSFKAEISKRWEMEDLGLATTVVGIEVKRESESVYSICQEVYATKILQRFDSLDLKPASTPLPPGLKLFK
PSLDEIEDFACKKLPYxSIVGSLMYLAQCTRPDLAYAVGVLSQHLDWPGFQHWNAANHVLCYLVGTVNYGICYSGESPNK
PVKGLKSQHCPQALCDADWAGDKDTRRSTTGYLFILAGGAVSWRSKLQPTVALSSTEAEYRAITEAGQELLWLRTMLTKL
GYEDSDPTILKSDNMGAIHLTNKSIFHARTKHVEIHYHWIREVVKAGKLTVQHCPTHLMTADLLTKSLGSAQFTHLRKIL
GLKPIP
>Copia-27_BD#LTR/Copia 151-4451 via tfasty with Copia-20_BD, 3 frameshifts and 2 stopcodons. [Brachypodium distachyon]
MKEMAEKLKELDVNGTSDSKSALPLTTLASPAPSHLPIAWPQLTRTNYTIWSMKMRVAMQSAHVWEATQRSDVDFDMDRE
ALFAIYSAVPDTVMSSLAGRDTAKAAWDAIKTSHVGHDRVREASLQSLRKDFEELQMGDAESVDDFASRISALVAGIRAL
GDTLSELRVVQKFLQAAPAHYMQIVTSIEQCVPLNTLTVEDLVGQYKAHDERVRQRFGNPKDGEHLMLSRSQWENFTGNK
RKNVEGTGNWAKAGSSSSGAASAKQSTEQAKGEWKFDKKNNCGKKGHFKKECKKPRKERAMVAEKEIxDEEPALLMVQTC
ELMQSSETVDGEVFLNEEKVQLKARNAENYDCGVSYLDTGATNHMTGVKEKFSDIDETVKGKVKFGDGSTVAILGRGTIL
FQCKNGEHRALTNVYYIPSLKSNIINIGQLSEKGCKIVIEDDYLLLYDPGRRLLARVKRARNRLYILDLSLTRPICLMAN
TGDAAWIWHARYGHLNFDALHKLARKNMVVGLPQIDHIEQICDGCPIGKQRRKPFPATATFRAEQPLALLHADLCGPVTP
PTPAGNRYFLLVVDDYNRYMWIVLLKSKDQALAAIHKVKKKAEKEVNCELKSLRTDRGGEFNSMHFNEYCDEHGIKHFLT
APYSPQQNGVVERRNQTVVSMARSLLKSMSVPGIFWGEAVLRAVYILNRAPTKSVKDRTPYEAWFNKKPKIHHLRTFGCV
AYVKITKPNQSKLDDRSQRAVLIGYKPLTKAYHLFDPVTKKVIVSPDVVFDEKRHWDWSEVTELEMQGEVNEFTVVYPTY
DVDTRKAQRKIEQSDQSSDVAQNAPALGNDEPSTPNKPSTPLVPILGTTGSAGVGMESGEQSSSVGPQGYRNMQELLDNT
SPCTLDLDDDNQCMLSAEEPATLAEAHKEECWRKAMDEEMKSVIDNQTWVMVDPPTGKKSIGLKWVYKVKKDPTGAIVKH
KARLVAKGYVQKHGVDFEEVFAPVARMESVRLAGALASQEGWQVYHMDVKSAFLNGELHEEVYVCQAPGYEEAGKEYKVL
KLQKALYGLKQAPRAWNTKLDASLLTLGFARCPLEHGVYLRNTGDNQLPVGVYVDDLIISGSSTVEIEKFKEQMKELFKM
SDLGLLSYYLGIEVSQGVNGITLCQAGYVxKIVDKGGMSECNPSPIPMESRLKLYKSQEEERVDPTMYRSLIGSLRYLIN
TRPDLAYAVGIVSRFMEDPGVSHMAAVKHILRYIRGTITFGCHYTRRGEGYSGLVGYCDSDLAGDVNDKDILDLLGYCDS
DLAGDVNDRKSTSGMIFFLGSNPITWVSQKQKVVALSSCEAEYISAATAACQGVWLGRLLAQLQNKEIHCVKLKIDNQSA
ISLCKNPVYHDRSKHIQTPYHFIRDCVEEGSVAVEHVRTGDQFADLLTKPLPRIKFLELRERIGVRPVKIQVQD
>Copia-31_MLP#LTR/Copia 87-4220 62.9% sim to Copia-16_PGr, SW:1461, [Melampsora larici-populina]
MTDSSNSARVHFPKLAKTNYVEWAGDVVAHLMTCNLEEFINMDSPPVPPVKVDGSDQSIQLAVFATKQKKAAGILFGCID
QDNRICIVAKDAVSDPIKIWKILKEHFQSSSDENQARAYLKWTDIIFTDLETYITDNQHALAGLLAVDGIQHIHQKFIGE
TIVSKLLSSMDITKTLLRKDRPLTSEKVINYLEAQLVSIKDEELHTNTIALAVRQPRALQRTTTQRPLTFGRPSRPYCSN
GRHNPEAKGHTSTQCFQVNPGLQPAQTSSTQPRASVTVASDAFFEAQAFVLTTTEHKGILLDSGCSHHMVPDKDMFENYQ
PVSSNVTLANGANIRIAGKGTITCNLADSEVILQALHVPDLGCSLISMGSLLMQGYTIHNHVDDILMTKVGVGTFVGHVR
NQVIELDITIGTSTPISNPRANISISDYDILHRQGGHPESPRLKMMYKVGAPDNWNCEICKLSKGHRLPYPGHFPSAKLP
LDVIHSDLSGKISVPCVGGGLYYFKLTDACTNYKHVFIMKLKSDTFSCFTRYKTLVETLHNKKIVSLVNDQGGEYMAKDF
QELLKKDGTTQHLSAPYTPQQNPVSERGNRTTTEKARTLLRQSNLPYNFWAEAVTTAVFLENVTPAKITQNKSAYELWFG
RPFDYSRLKPFGCRAYVLIPKQFRRKFDNTSSKGILLGYQVGMKNYRIRLDDGRIVYSHDVTFDCTNFPGIEGDTERDNS
DLDTLFKDDYIIPNISIDSPPSTSTPANVQTLEDTPHDTPTPSQPSSPVILPETTPSEIEDEVAREEDDDSGDDNEVVDN
LTNHLKPGWDWQLRAEAPQNISSNIDSSNILPSGSRRRAAAVSVKSTPTLNNPTPKTYKQALLSNDKTEWDQAITTELLN
MTRRKVWSVVNLPKDRHAIGTTWVFKKKMGAEGELLKYKARLCALGFLQYFGVDYNETYAPTGRLATFRSVCTIAAEEDL
DVIQMDAVAAFLNGSPKEVIYIRIPKGYNVDNATADTVLQLNQALYGLKQAPKVWYDTLKAFFATIGLFPSPTDPSLFIS
SDPTWRCLVHVHVDDMVIASNNVERFRSAITEKFQMDENTDFKYILGMKVVRDCQTKTITLSQAQYIQDLLEDYGMEECK
PVGSPMTPNMYLIPGTTSEREEFLNLGVSYRRAVGKLMYLNNATQPDLSFVVSQLSQHLNNPSIVHWIAFKRVLRFLKGT
QSLSLVLGGSGLNLNGFADADFAACPVTRRSTGGYVTRLGNSTVNRNSKKQDSVATSTTEAEYRSAYEGGQDIVWVNELI
AGMGIKQEKAPSFKLDNQGAIALSKNQKFQRRTKHVDVKYHWLREMALQSKLKINYIPTNDMIADVMTKALTPGKHGNFC
TLLGLHDVTKMGGNQDQE
>Copia-29_DPu#LTR/Copia 60-4941 via tfasty with Copia-30_DPu, 60.4% SW:2580, 2 frameshifts and 9 stopcodons. [Daphnia pulex]
MAAYYSKDVSHIKKFDGTDFSFWKFQVELVLEQHQLLSVVKGREICPLPDVQENELILPDVQENELIANQDAITLWKTKD
VAARSCLISTIEDSCKRSLLNCRTAAEMWTRLTVQYQQNVAESKHILCNQYYQYAFEPGNSVMAHISAIEGMAIQLTDLG
VEIGATQLMTKILLTLPPSFQSFQSAWDILPDQEKTLATLTSKLVLAETMNKHFGGHTEKDQAFFNKRTGSAPPRSHPPR
SHGLSAKQLFCSACGPGLHSTATCRKRKWNQSTDVPPSGSSEKQEKCTYCTWENHRVEDCSIRLKHERELAATKTRSKKS
KDRSGYASKKEDASTKEKEDLNGDRHPNNDTMAFPAYSSASSRRSGSTLFVADSGATDHMSDQLHIFNVFTAVTPGDWKI
KGIGTNSALQVHGYGTVNIRSKVDGIWYDGILEKVLYVPNLGITLFSIGTAADLGCVVTFDKNQIRLCQNNTPVAVGTRS
SQDDLYYLNIEVVPTTASAFLSVSSVPLSTWHLRLGHISTTIIKLMESTNCVIGLQLSKSEELPVQQCEGCAYGKSQRLS
FPTSGHIKATEIGHLVHSDLCGPMSVASPSGAVYFLIFKDDYTGFRVLYFLTHKSQVFHYFQLYSSQLHTETNQHVKILR
TDNGGEFTSSEFSNFLSKEGIKHETSAPHTPEQNGVAERENRIVMESARSLLHAEAISLELWAEAVACAVYCLNRALNTN
NKICTPFEGWYKQKPTISHLRIFGTKAYVHIPGVERKKLDAKSKLCTFVGYSDTQKAYRFWCQETRKIVISRDAIFCEKD
ETVFPVNPLVPEKISNELPSSTSFLPKRKNNVFPPSDINKDVPSPGDRRNPARVRHQAVPRSSLHALSAETSTTEPLSYD
DAISSPDYLLWKQAMEEEMAALNLNHTWTLTTLPRGRSPVDCRWIYKLKHRVDGSIERYKARLVAKGFSQRPGIDYDQTF
SPVVKYDSLRTILSVTAAEDLELYQLDVTTAFLHGVLKEEVYLRQPEGHVIPGQETQVYRLHKSLHGLKQASRNWNEKFD
EFLTKFGLVPSQADSCVYFLRKDAEITIVSIWVDDGLVASSSKKIVLEIIEHLQLQFEIVSRPADLFVGLLINRNRDKKY
LHLSQPTYISKILSKFCMQDSHPKATPADPFNKLTKESSTADSDSSKLFPFQEAVGSLLYCMITTRPDISYAVGQVAQFT
TNPGKSHCEALKRILSYLKGTIHLAIPPELHLIRIDSNxFESIRIDSNRFNLNCVFxDFSNIQFNSNWKNQNSYSFELxY
FWVNIHENLPEYSFPDSxIFIVNIHEYLGRFVSNLTKFLQSWNIFSFNFDRxMCHLFVSINEGDGYCLGTFKWTTILLLL
NYHxIQSIxVIFYCNYLKQLKLWMFxCNISCLINKNNFFFIFLDFIRIDSNSIRIDSNxVFVNSNQFKFNSNCILKKIIQ
LRLREIPRIDSSGIATSTYGLRFQKTQSNGILFAFTDADYAGDLDSRRSTTGYVLTLNAGPVAWGSIKQKCVALSTTEAE
YIAACHTAKEIVWLRNLLHEIGFEQVDSTTLFCDNQSAVRLVFNPEFHKRTKHIEVQHHFIREKQNDGSLHMQYLPTEEQ
LADLFTKPLPGPRFEKLHRQIGIEDLLV
>Copia-23_BG#LTR/Copia 119-5131 via tfasty with Copia15-NVi, 56.7% SW:763, 1 stopcodon. [Blumeria graminis]
MSGMLGMSKADREIISQGASNKEEEKSSKERKLFGGGTSGSGLGGAPTVSFGKIPQFSVGYSPGKRQKGTSKTPRKTKGK
ASVRSMEEEDFEEEDDMDWEERSQPRWGEPMSRRQAPDTRTMLDWASFDWKPDPKSFLRGIDNYSIYRETILLQLECIGF
RIGLKLTQLDELKLAAVIQRTVTPELSEMISGMRSGTEMMRLFESTFRRAGIMQVEALWEKLNGLKYSGGCPVQFVTKFK
TAARNFQAAGGESSSTQLMILFKQAVKEKAGRWYGMVSTLARFNEWKFEPLLQDFIAAHHEKIGRNAQSNQSEVQGTLGN
TQNNYPDQPKNTPYKNQNSKGKSKGKGFRCWNCGKYGHVKTKCPNKRYDGGNKTSFLASKNENDIGPPPVIADEYCQIKE
QSSGYHFATQARPGIYDQVVEYYEKEMLRRRCKAIEITENDSENCSDFYKNDYGDKSDSNPRFGNVNVTQQILSTAGVDT
SSDRWLFDTGADVDATNKRQNFRPGTVVELKPDQFPIQTGNGIVYAECIGEVWLPLTGPNGSKSIMRLKYVVYIKEFPLN
IVSGERFYRKGGRLKGDQIVSPNGEVLSYIDAERRGFFLWLYNQPEPVKSLTRRKNVSATSTISELSKRDLSDDESTFVR
EYKSCLVDGCFIMSEKVMRMLVLWHRRLCHPSSERLIWTIKNTVGIGLNVSDIENLPCKACDMGKSLKFTTKERLPRMKN
VGEGWHCDVGTLNPLSIEGHGYFCLTTEDVSRFRFFRALKKKSEAAEELKRILSQANSDLRRLSDLRVKQVTIDGGRDWG
LNTFQEFASQQEINVVISAPDNQYQNGVSERGIRFVQDAARCCAIQMKVPSVFWNYILEMTCYTLNLTSQSSVDGHRTPx
QVYWSQFDPDKSTPRIDHLWIPGTLCITHVDASHRITGEKLDANGTRSVFFGYRGTKNKLVWLLDGGRFLISPHVIAYEN
ISSELGWGVDPREIIRSLPRHVQDRLRSRKMDYARNQDYNAPDSEDLPMVAPRGRGRPKRIIQRPYDDHALQVLKAPFEV
DNELLHLSPEANQSKVSEEIKVEDLCDAITGRHFGTLPGELDDSFDISALSAVRKAIDRDQFSQHDDGEELFRLLCCNQN
SLSYIFSATADEPTFNQAMNGPEKENWVKAINVEIQGCLSRGTFKFVRALPDHRKLVTSKWVLKKKYKSNMEFDKHKARI
VARGFTQTQGVDFNETSSTAARSASWRTLMALAALNGWYTLQADFISAYLAGELKENIYMKQFPRLKEFFGENKELAERL
GYSEDSIIKLDKPLYGLKQSGNCWQMKIRSVMKKYGFKHLVSDNAIYQNRARNIIVASYVDDFLLIGPNESDLQELTRVL
NKEVPLNDLGEASWFLGIRIRRPSPTGSIMLDQEQYLKRSFEEMDLVLEKKHPETPMTPSCKPDLRKYAGKSTAAELYNY
QRLIGKYNFSSCMVRCDTAQATSQMARFMCNPSPQHIKHASRIPQFLSAYPDRGLLYEKSHRHVQRFGKYGLHCAVDSSF
ADDFDSAKSTTGFVIFMAGCPVIWRSKLQSTVSTLTCEAEYAAIFEAAKDCSWIRSFLTELDHMPSGPIPILEDNTGAIK
WATDDAMTSGRRHVRVEYHYVVQEVRAGNIKICQVASKENPADGFTKPLVAESFKQFIDHLGMKDEISPLN
>Copia-20_PIT#LTR/Copia 50-4472 via tfasty with Copia-29_PIT, 68.2% SW:2386, 2 frameshifts and 1 stopcodon. [Phytophthora infestans]
MSRLTWKESWNFDSRKPDFTAWQIRIQTLLEAEGVWDIVSKELHFSERWSHRRREDFIARDKKALHLLISSLDDPTVRAL
GKYKRSWLAYDLMERVNAGKGTINIFRARKDFQNLKYNDGEDMQAHINALEDKAEALARLRRPVDDEEKVMQMLGSLPDT
WKNLVMVCQNEKGLTWEDLQAKLLLESDTRKDIKETTDIQAHLTEGSQQLPFPAPSLSSKAIAHFGQGPHRRSGGRLPFR
SQLKQPSGRPYQRNETDKECHYCGKQGHSIRDCRMKARHDHERGANTQKPAAANMMVATEEEEEALDSYDVLAVAVAMDH
VYIKGNIQATALQAAVASKDPTLSRELWVLDSGCTQHMCYDKSYFTELKTVSQRVHLGDNNHVEVDGIGRVVLDFKGEDG
SNVKLTLSKCFYLPKLSRNLLSVRCLREKGVKSDFSTYVDRAIIHKGKMRIKSAENRFNRLYVFKTSCINTLTESAYVRV
VNQPISLWHSPCGHLGYQNIARLVARGKAHGLQVAKRDLVEFPVCDVCERSNQQRASFKSTYTKHATSLNELVYTDIKGP
IEVSTFGNKRYVLLVVDEFSGFVTTYLLETKAEALRHFKQYVISAETKHNCPVQAVSSDNGGEFTSPEWVKFCEVKGIAR
RTTTPYTPEQNGSAEVRFRVLFRKVRALLIDSQLPKQFWGEALLTATLLGNISPLRRAEVTPYERWHLREPDYSNLRVFG
SLAYTYVSATHPKRLELTATPGTRKTLDNRSVRGIFVGYADNRKAWRVLHCGTNTVVATCHATFDESNSYAAMELKRLKL
DRLAKLHHLDLIQPSKLAQSIPDLVFYAEPIEELNSYDKEIQQLDSFLDEFNVDELRDEQGNLPDVSCYVGQQVNNKISI
LELPTAGSEPQVLTMCAADRLSEKQKQAELMVATENIANKNENSKINSMATSVEPKSYNEAMTCSESLHWRKAIDKEGRS
LIAHDTWKLVKLPKGKRALTSKLIFKIKYDVQGNVERYKARLVIRGYEQVKYVDYDEISAPVIRLESLRMLLALVAINDW
ECHQTDVDTAFLNGEMTEEVYMLQPEGLVVKGKENLVCLLTKSLYGLKQAPRAWHKKLTNFLKTKGYVKLNSDACIYVRT
GDHALSIIGIYVDDLLLIADTTSGVEAIKSMLAEAFKCKDMGEVHLILGLRVQRDRSSKTLSIDQTSYAKSVIERFNLTQ
MNPCKTPCDPGTVLSKEDSPKNDDEREQMKAKDYRGLVGSLMYLMTGSRPDIAFGIQCVSKYLNDPGIPHWNAAKRILRY
VKGTIGYGLVIDGRNRNGLQLTAYVDSDYATDTDTRRSVSGYVMQVGNCAITYSCKSQRTVALSSTEAKYMALAHGAKEV
IFLRELLGELNMPQDTTVVFVDNQSAIVMALNPIHHQRTKHIDTRYHFIRERIALKDLEIEYVNTKENVSDLLTKAVTTD
VLQTLRGRLGVRETHPEVKSTSLGKRKRDGKYNxR
>Copia-20_CQ#LTR/Copia 97-2919 Fragment missing C-term [Culex quinquefasciatus]
MADQRYALPRLTSVNYHTWKFKMEMLLIKERLWSVISKEKPQVPSEQWVEKDEVARATIGLWVDDNQARLIKTCKSAKEA
WEKLKDHHDQRSVVYLLKKLARLDLPEGGEVEEHIQVFNELVQRVEDAWQEIPDKLRVALMMVSLPDSFDPLVTAIQQRP
VEEITSDLLQASLMAEAEKRRERSSAVESGDKALRSNVIKGKGGKGGTKQQQQQLCNHCHQPGHFWRKCPERKKEESTNM
KPESSKEGEVKAKQADVSDEPLAWMTGHGGSAEWYVDSGASRHMTGDKRFFKALQEKVSVSVTLADGKKAEVRGTGSGTI
VGVNGEGNPVDIELHDVLYVPKLTSGLISVSTLAAKGFEVVFNGERCEVRNRAGVVAAQGTRHGSLYRLCTPDQAMITVQ
RSHTANCLHTWHRRLGHRDQEVVQAIPGKFAEGIKVEDCGVRMLCSSCMEGKMSRTPFPKQAVHDTKDKLDLVHTDLSGP
MEETPSGNRYYLSLIDDYTRMTFVYLIRNKSDAAGKIENFVKFCKTQIGKSPRVIRSDGGGEYVNKALQEFLRREEIVSQ
FTAPYSPQQNGVAERKNRYLKESSLCMLRDAELEPKYWGEAVLTATYIQNRLPSRSIGISPFEKWYGRKPSLEHMKIFGS
EAWVQVPAQKRKKMDVKARKLVFVGYSNEHKAYRFVDKQSERVTISRDVKFVEDLRMPDERKCSEFESESVKHDREEQEV
SPMEPIVRNELSDDDSFEGYESAEDLFNGEEVVQEAAAPGDPPGPGGVDGEPPALEAAPRAPDTEPAGQGQQLRVLPDRS
TRGQLPVRLENYEVGLVVMEQDEPAAYEKAVRCPEKEEWVRANNASKKKQTKVCRLLKSICGLKQAARVWHRTIAGKLSR
LRFERCNSDSSIYKQPIGKDGIFLLIYVDYLVACKQEEKINRIERDKERAVPKLDDGGAQG
>Copia-21_GM#LTR/Copia 47-4142 via tfasty with Copia-91_GM, 84.0% SW:4263, 1 frameshift and 3 stopcodons. [Glycine max]
MAQKSSAISLPTTLLILDSKNWSRWCIQMRVILGYQEVLEIVEEGFPALGEAPTVAERTTFKENKKRDCKAMYILHQCVD
EAHFEKIAEASSAHAAWEILETANEGVAKVKKVKLQTMRRQYELMAMEDSETIAAFFNRVLVLTNAMKAYGEELKTLPIV
EKILCCLAPRFDHVVVAMEESGKVESMTIVALQGSLEAHEQRLLERTTGQASDQALQAQSSRKNNFHRKGNNRGKVKGKE
YKSSSGKGSGNHEPSKSDQEPAESSGHRNGGNQRYRCKKKVIDRKKLRCYNCNKIGHFSSECNAPAQGNHHDGHGGDEAN
LLKDDGDLDEDPSVMMMMTTNSDSSSSRTWYLDSGCSNHMTGHRNWLVNFDDSKRSAIxLADNRTIAAQGMGDVLISKKD
GSNALLSYVLFVPGMKSNLVSIGQLVEKGFKLKCEERVLELFDQQGKRMLKIPLAQNRTFQVDLSVTKSQCMSTEILDSD
TWLWHLRLGHLNFKGMNMLRSKGMVRGLPSITIPKKVCENCIFSKQPRSSFSSFTHSRSQNLLDVVYFDCCGPFDTPSLG
NNKYFVSFVDEFNRKLWLYMLKLKSEVFETFKIFKSMVKKQSGRSIKILRTDGGREFCSTEMSNYCKEHGIVHEITAPYT
PQDNGIAERRNRTVLNMVRIMLRSKQLPHKFWGEAATTDAYVLNRCPTQMLIGMVPEEAWTRRKSSVSHFKVFGSLCFKH
VPDQRRKKLDSKSEVMIFVGYNPTGSYRLYDPNAHQIVYSRDVYVDEQRSWKDYTENFSVSRRQVQLSWDNSEVINDPAR
FNHDASPAGVRGRPVRNRQQPVRLQDYELFPNNAVTNDGDLIHLALQSDIESVSFDEAINSEVWRKAMTEEIESIERNKT
WELVVLPLNKKPIxVKWVYKTKLNPDGTISKHKARLVARGFLQEQGIDYKEVFAPVARFETIRLIVALANINHWDLWQLD
VKSSFLNGPLDEEVYIMQPPGYERKGEEEKVFRLKKVLYGLKQAPRAWNKRIDSFLSHVGFVKCTIEHGLYVKQEGVGDI
TIICLYVDDLLITGSDVKLIDRVKKQFSQEFEMTDLGLLTYFLGIEFLRTECGTFMLQRKYVIDMLKKFNMKGCNFVETP
ADMNVKLESFTEEDKVDCTMYRQIVGCLRFVCHTRPDISYSVGVVSRFMSDPRKSHLVVAKRILRYLxGTASFGILFPYQ
KEKFCLQLVAYSDSDWCGDKVDRRSTMGYVFFLSGVPICWCSKKQDVIALSTCEAEYISACNAACQANWITYLLEELNVK
MSRTVELLVDNKSAIDLAKNPISHGRSKHIETKFRFLRDQVNNGKIDLKHCKTDLQVADIMTKALKIDRFKMLRKMMCVV
NSIDF
>Copia-22_DPu#LTR/Copia 335-4201  [Daphnia pulex]
MTTISPKEQQAFVNCKTANSIWVKLAAQYLQNASASTHVLQARFFHYQFLKGHSMMSHITAIEGLAQQLEDLGSPMSQSQ
IMTKIVSTLPTAFRNFMTVWDNLPETEKTMPQLITKLMNEQHRNVCTSPSSSKIAPVNTEIAAFAAKSESNRPTNSWERR
ALESGRPFQSREKRTVVNPDRKRPREECDFCGKFNHSELTCTRRINAEAGHPDEKCTYCRNYDHSAAVCSKRIRDERNES
KTAPRTVKFARTDKDGDKDGVAFIAFGASQTPMNEDLWYADSGAIHHMCNSKSRMQNYTHTSTSRSVTGIGGVQLNVHGQ
GDVHVITKINGTPYNAVLQNVLHVPGLGTNLLSIPSTTERGIDVHFTGQSVSFTKNGTIIMAGSRVGKDLYELDISTADS
SQNDAIVCSAVANRQPISIWHQRLSHTCYKTIIKMVSNGLVDGIELKDNSTPSSICPGCAFGKMHRLPFESGRRRATKVG
EIIHSDVCGPMEPPSPGGARYYVSFKDDLSGYRVIYFLRLKSEVFDRFKLFVCKIESETNQSVRTLRSDGGGEFISKEFN
EWLTEKSIRHEISAAHTPQHNGVSERDHRTIGEAERSSMHMNNIPLELWAESYNCANYTLNRTLSSSASVTPFELWFGRK
PNLSHLRIFGCEAYMHVPDCDRHKLEPKSIKCLFVGYCETTKAYRLWDPVDRRLKISRDVIFNESPAHDVSTHHDSLKSS
HPANECLNPSDQITATGPRHSSRTPQPKKLWAEFASTDKPDLTTPIIEPSSFKLAMASPDSDKWKIAMDEEYQSLMDNHT
WSLAPLPHGRSAIGCRWTYKLKHGSDGTIQRYKARFVAKGYSQRPGLDFTETYAPVVKLDSLRAILSIAANRDLDMIQLD
VKTAFLYGEVAEELYISQPEGFIVTGQESLVCRLHKGLYGLKQSSRLWNLTFDSFLTSFGFISSSADPCVYFRENASEFT
IFALWVDDCLLCSTSSSVNTAILSYLTSHFSMTSGSADLFIGLQISRDRAQRKLLLSQPQYLQRIIERFHMTNSNPSSTP
ADPNARLDSSMSPSTSDEIKAMNTTPYSEAIGCLTYAAVCTRPDIAFAVGQAARFCQNPGKAHWSAVKRILSYLAGTTTH
GLLFSGKGRTTLVGYTDSDYAGDKDTRRSTSGFIFLHLGGAISWGSTRQSCTALSTTEAEYIAASNATKEAIWVQRLLLQ
IGHLQPGPVRLLCDNQSAISLVHNPAHHQRTKHIDVRYHFIREKQSDGVIDVVYIPTDHQLADIFTKPTATHRFNFLRDR
IGMASSVAI
>Copia-21_PIT#LTR/Copia 8-4554 via tfasty with Copia-29_PIT, 75.1% SW:3492, 1 frameshift. [Phytophthora infestans]
MSPRPPTLNYATMKWNSDMNFNGKNYAPWKARIKTLLQAKRLWGIVTRTELPPRRDARPDVVDSFWSREHEATAFLMTTL
SDEMVIAVSNKTCAYEIFELLEKTYEPRNWGSLCALREQFVTLKYKDGKDMLPHINELKTLAGRLANQGKPVDDTEKVCQ
LLSSLPSSWDAFKSMYHIQESPISWSSMETNVMAEAARRVATGSQMIETSAMAANAILQQESQKPNTSRRLKGFGRSGRK
SEGPGGQDGDKKHGRHSKGGECHYCHQEGHYKRDCPMRKRHRSEQDGGVSADAAVRVVDKTEHDDHHAPAAAAAEVWGLA
VLVTSPRDLSEASANSSDSDTVSELLDSAASSADTMSTTSSDEEVGDWLRLCAWDVSGAYFHGQLETTETNVSGSASVQL
VAEPERAEAATALSQTPSHDDTWIIDSGCSQHICFTRSMFDNLRLCGGTVTVANNATAPIQGVGTVTIHVKDSENKLQEL
ELTNVLFLPGLRKNLISVTQLALKGVAFDFHTTPGKVILQLGSKTLTSESENGVCVLKSMNKEQVALYVFPRLTIDLAHR
RFGHASKSVLAKMLAKKMIMGMKVVPSTSEDAGLCDACQLGSKKRRSFPSAPRLGVLECNDVVHSDICGPIEVSSLTRKR
YVLLFVDVFTRYCHVYLLEHRSECFDCLVRHKAAVETHHNRSVRKIVSDNGGEYLSDQLKNFCELNGISQHTTSSYTPEQ
NGMAEVRFRILFNKVRTMLIDSNAPKQLWAEALLSVVYLQNRTMNASTQRTPFEAWYGFPPDVSHLRVFGSLAYVYLPTK
TVTTSTKASGRSNKRQKLDYRSVRGIFVGYAPQQKAWKMLDCSSGKILVSCHVSFDETFSPAAEELRRQEFRLLSAHCAV
DYTRSAISEADLLFYSQKPTEDKPSSRDIALLEDFVSSFDISEVNLAQVGPVLRDYDREACTIVSGISPQVLTKRPAAKN
PLLHAVRKQQEAAALVALENVAAKTTVGDFVACGIASEPKTYSDAVARPDAREWKEAIHKEMASLKSNKTWTLMPLPPRK
RALSCRWLFKVKYNSDGSIERHKARLVVIGCQQVKYIDFDEIFAPVVRLESLRVLLAIACIENLECHQMDIETAFLNGNL
DEEVYMKQPQGMEVDGKEDWVCKLHKSLYGLKQAPRAWHKALTSFLVRSGFEKLTCESCIYIRRSRCELEIVAIYVDDLL
LLCKTTNTMAKMKETIKEEFKAKDLGEVSFILGLKVTRDREARKLWINQQNNVDAILKKFNMEHGAGVATPTAAGKKLTK
LQAPTTEEATAKMLKKPFRQAVGSLMYQMIGSRPDMAFALQDVSRFLANYGESHWEAVKRCIRYLKATREHGLEFSGDSV
VLRAFTDSDYAACEDDRRSVSGYVTMIGNCTVTWSSRKQRIVAQSTAEAEYVALAHCTREVLFLRQLLKELGYEQTAIVI
HEDNQACIAIAENPSHHSRVKHIDVRYHFIREHVQLEEVTLQYVVSKENVADTLTKGLPKEQFDYLREVMNVKSMR
>Copia-31_ST#LTR/Copia 82-4643  [Solanum tuberosum]
MAIGNDTTTTSTSSVAAPETMELVESKRNHPLYIHPSDTPGSVLTTVQLTGSENYSLWSRSMLINLRAKSKLGFVLGTCK
KGDYTPELDEQWEKCNAFVLAWIMNTVSKELLSGIVYASDAATVWEDLKERFDKVDGSRIYQLHRDICTIHQGNLTVSVY
FTKLRLLWDEFDALVPPPSCNCDRSRVYVDHIQYLRLLSFLMGLNELYGPTRSQILMMNPLPNVGKAYAMIVSDESQRIT
SGMRTGGDILEATSLYAGKMSYGNRNTDHGDKGEYAGRGSYNGKKKVNWNLFCDHCKMHGHTKNICYKLVGYPEDWKFKK
KFDHAGDYRYSNAARGMNSNKGKDLANNVQVDKCNDDAFGSVDEGHKANANAHEFNSVRTNLQALAMKPTYTPEQYQKIL
RFLDEEEKTEEMVNMAGNSNDLNALLDSHRKSSYDVVLNVNNKYERSSKQGHWIVDSGATCHMTPKSENLDNISDHNKVT
TRRVYLPNGHTTVVTHSGSCTIPAGGVLKNVLVVPEVKYSLLSVSQLTRQLKCSVHFYPEFCVFQDLFNGEVKGIGKELE
GLYYFPRRYPQTKAANDKCLLTKADSQSLRWHYRMGHPSFRILKGLYKDTTHDVCDNCPICPLAKQTRLPFPKSVSRTNA
IFDLIHLDVWGPYRTVTHNGFRFFLTVVDDNSRMVWLFLLKFKSDVIVALKSFFALVQTQFSKQVKRVRSDNGTKIFNRE
CNALFSSLGIIHESSCPHTPQQNGVVERKHRHILEVARALRFQGSIPIVFWGECVLAAVYLINRMPTSVLQGQSPYEVFH
KTTPHLDHLRVIGCLCYSTKSVKDDKFSSRVDACVMMGYSLTQKGYLLYNLKMKKFLVSRDVVFKEHIFPFSQVKDHHVP
VFPTQTLLDSDDTLVKLPFNDESLDLDIPVQTGSDNEISHDMNQCVVDSHNTPVVVHNDPFDAVPSNSSKRAVHPPVWMK
DYVTHVTDSVHPYSLATYMSYDHLSTSYQAYLSDMSADTEPSTYEVAVKDQRWVEAMKQEIAALESNGTWKVMSLPLGKR
AIGCKWVFKIKYKANGQVDRFKARLVAKGYSQTEGIDYQETFSLVVKMVTVRSIIAIAAAENWQIFQMDVFNAFLQGDLF
EEVYMELPKGFTSQGEHKVCRLMKSLYGLKQASRQWNAKLTDAMVASGYIQSHLDYALFTKRKGSALVIVLVYVDDLLIT
GNDFTLIQETKQVLHHHFKIKDLGELRYFLGIEFCRSDQGIIMNQRKYALELISDVGMSGCKPSSTPLECNMKMISADFR
QDVIAELFTDVNRYQRLIGKLLYLTNTRPDIAFSVQCLSQFMKKPTVSHWNVALKVVRYIKAAPGLGILMSSDKQAQLTG
FCDADWAACLNSRRSVTGYILKYGKSLIAWKSKKQHTVSRSSAEAEYRSLAALTAEIVWVTNLFKELKMDVHEPTIIHCD
SKAAMQIAANPVFHERTKHIEIDCHFIRERMQQGLIKTSYINTKEQQADLLTKALGRSQHDFLLAKLGVLNVFNTSSLRG
N
>Copia-40_BRa#LTR/Copia 83-4174  [Brassica rapa]
MAKAKVEMEKFNGSIDYNMWKERLLANLDLLGLRDALISQEEDLKKSEDKLEDTKLKGVADESDSKQQVDVSLAEKQRKV
RSTIIMYVTDQILRKIIKEKTAVGMLKILDAQYMSTSLPNRMHLKQCLYGFHMNESLTIENNIDEFLRIITDLSNVMVEI
SDEDQAILLLMSLPKQFDQLRDTLRYSKTTVTLDEVISSIHSKQLELGVNGNGKGSKSQGEVLYSSSNNRGRSGTRDSNQ
SKFKGKGRSKSRGKGNQPTCWTCGAEGHFKRNCPKRSHDRGKEATKETGESSAVTGIKYIESLTVSEVNVAESYDYREIW
IMDTGCSFHMTPRRDWFIDFEERDVGSVRMANESTSSVKGIGTVRIKTSDGSFVLIKNVRYIPQFSRNLLSLGVFESEGC
SFSSEQGYLKLTKGCRTVLKAKRESNLYFLQGSSHVDEVNLVSVEDETSLWHSRLGHVSQKGIDVLVRKGLLDKKKISTL
QFCESCIVGKAHRVSFGSGQHTSKACLEYVHADLWGSPTVPQSLGNCHYFLSIIDDHSRKVWIYFLKTKDQAFDRFADWK
TLVEKQSGLKVKTLRTDNGLEFCNKRFDDLCSDQGIARHKTIPYTPQQNGVVERMNRTVLERVRSMLDESGLPKVFWAEA
ANTAVYLINRTPSAALQNEIPEEIWSKTVPQFGHLKKFGCVCYHHSDEGKLQPRAKKGIFIGYPTGVKGYKVWSLEDKRS
IISRSVTFKEDECYKDLKGKSSEHKESNINFLDIELGISKEKDMSSGGESQEANQDSVVNTDVIAVESSDSEEDFSDQEG
SGGEAVTGSYQLARDRSRREPKPPKKLDDYVYLACMVAEDGDMVEPSDYKSAMRDPHRKKWILASDDEMDSLQRNHTWDL
VKKPKGRAIIGCKWIYKRKPGILGVEDPRFKGRLVAKGYAQKEGVDYNEIFSPVVKHVSIRYLMSIVVQEDMELEQLDVK
TAFLHGDLEEEIYMTQPEGYEEKGKEDWVCRLRKSLYGLKQSPRQWNKKFDEFMKEIDFKRSCHDQCVYIKRVGGVFVYL
LLYVDDMLLASKDMTIINNIKDQLSSRFEMKDLGAARKILGIEIIRDRAKGTLILSQESYMEKVLKTYSMENAKSVNTPI
GAHFKLISADPKRVRVDEEYMRSVPYCNAVGSLMYGMIGTRPDLAYPVGLVSRFMSDPVREHWDAVKWILRYVNGTRCMS
LKFERAEEFKIVGFCDSDFGGDLDRRRSISGYTFLSGGCAISWRSSLQKVVALSTTESEYISLTEASKEAIWLMGLSEEF
GYKQANIEIFCDSQSARALAKNNVHHERTKHMARKLSFVRELVEKGEVQVSKVHTDKNLADTFTKVLPVSKFKHLLSLLG
ASVL
>Copia-39_BRa#LTR/Copia 112-4218  [Brassica rapa]
MADQQTNLDRAYGVTNIKQHIPLILDTDDHNYDAWKELFLTHCQSFDVSGHLDGTLLPTDDNDQQWKKRDGLVKLWLYGT
LSKNLFKSAFVTGGTARQIWIKVENFFRNNKEARAIQLDHDLRNIEIGDKSIHTYAQELKSISDLLANVDAPVTERTQVT
YLLNGLSEKYENIINVIMHRQPFPSFDDARSMLMLEEDRLKRGKKTSAHKDTSSSEKVLNVEASSTPQKLNTQQQQQRPF
NNNRGFRKNNRGRGRGYNNQRPFYNQWSPQYWNNGYPYWLQQQSNQWNQPMQQQFQNQGLLGPRPSTPQQALNVPTFTPA
ANNNYPVMTTDFASAFNTMTLTDPTDHQWYMDSGATSHLSNSAGNLQSTFNLDTGHTVTVANGDRIPILKSGSFSFPSSS
RNLNLSSVLVTPSIIKNLISVRKFTKDNSCSIEFDPFGFSVKDLRTRQTILRSDSTGDLYPVFSSTNKPNTTPSAFLTTT
STTWHRRLSHLSNQTLSSLLSSNVLLCNKHDMASVCDACQFGKQIKMPFMSSDSTVTASFDIVHSDLWTSPVQSLSGIKY
YVLFLDQYSHYLWVYPLRSKEEVFSKFKIFSNYVENHFKTKIKSLQCDNGTESNNSKFHNFFAEKGITFRFSCPYTSQQN
GRSERMIRTINNSVRTLLFQAKLPSSFWVEALHVSVHVLNLLPSKAIDNKVPYTTLFNKPVSYSHLRVFGCLCFPNQNHS
SLSKLAPRSTRCIFLGYPQSHRGYRCFDLETRKIILSRHVVFDENQFPYGDSSKPTETSYDFLESNTSPILQKILTTPAG
TLPTPPAPISSNPPLPAQAVPQTNEPTRHSMTTRSKHGIRKTKQVLSLLTQNRSPLPKNIHQALSDPNWTPAVNSEYDAI
IKSGTYDLVPRPKHTNIVHSMWLYKEKFDAQGVFKKNKARLVANGKSQEEGIDFSETFSPVVKPATIRSVLHVALTNSWP
VYQLDVQNAFLHGTLDETVYMSQPPGFVDKSRPDYVCKLKRSIYGLKQAPRAWNARFVSFITRQGFKQSKSDASLFVLKN
GSDLAYVLLYVDDIIVTTSSPSLTTKVTNAMKKEFPMTDGGLINSFLGIAAIHNDKGLFLHQSHYAEDIIKRAGMHDCKP
VSTPVDMKAKLAEDIGKPVDNPTEYRSLAGALQYLTFTRPDIAYAVQQICLFMHDPRDLHMQALRRILRYLQGTKDKGLQ
LLRNQQMALTAYSDADWAGCPSTRRSTSGFCVFLGDNLLSWSAKRQQTVSRSSAEAEYKGVANAVAETCWLRNLLLEMHC
PLQRATIVYCDNISAVYLSSNPVQHQRTKHIEIDIHFVREKVQMGQVRVLHIPASSQYADIFTKGLPSSLFISFRSSLGV
SKLDAATEG
>Copia-40_MLP#LTR/Copia 279-4674 via tfasty with Copia3_XT, 58.3% SW:1391, 1 frameshift and 4 stopcodons. [Melampsora larici-populina]
MSVSTDDSKEIRVTGITFLKPPGDKSNYLDWEFKVELALEAVKLSYVLSPIAVKDHSNNWSDDNTKACALISRAVEDGNL
KFIKPHRRDTAGMWSALRLAHEDSTLGGQMHLLHRLITTCMEGDDVETHINALHRTFEKLDSLITDAAPLTVDEIFSTSI
MTSLPSDWLPVITPLMQQTTVVNSATVIRAIxNGATRRKTSSNLLSPSDVVADRANATPRSSSTAPPSSSKPRNTKFCTH
CERSNHEVQTCWIRQAERENRSSSSSRGGSSSNRGGRHSSSNRSSRPPTKAGRTSVVTLDFSDDESYVVDDEIIHSHSAK
VINVNSASPTDCNINSGCSLTMTPHKDDLFSFEKTNKSVQLADSSSIPATHSGLTVLSLNDGNHQHQALLVPDLQEPLLS
VSSLCDDGFVVIFKKESCKFYHLDQVNFTEAPIGNGYRKGNLYYLPSKVASSNSNSTSLKETNLSLLDWHNKLGHIGLKP
LKTLLKAHNVAPRVMNQIDVQQCRVCVESKMARRSFKSRAGYxASTVGELIHSDVCSFEVPSREGFKYFVTFMDDYSKFT
IIYPMKSKRDTFSCFKSFRFKFELRLLSPIKKLRSDNGGEYVSKEFASFLSKAGIEHNPGPPHSPELNGVSERMNRTICN
HIRCSLSSSGLPKSFWVDALRYLAHSLNSIPCYTPACFLSPCSLVSIPHVSLSKSHPFGCEVYYKIPEANRRKLDPKGSR
ATFLSYLSDGNGYNVWDATKSKLVKTCDVIFNDTIFPSLSKSSTPSPQSAPAEIPWPVCEKPLPSLKHRRLSVSIHNPAR
RPITPSMFDNAPSTPVSLFPVTKPLPFLSPLSDLSTSEFPPLPSNPSTSPPAVTPPPSRPSPTVSVVPSRRQSTQPRRNP
PKTKVPCVVNSPVSDTNLQPIIPEASLSPPAQPPAPQSSPVLPPRRSARNRTQPDRLGNLVKSASSSDQQVDDTPKTWKQ
LLRSPNKDQWLKAADDEFSSLIGMGTWKLVPRPQKQKIIRLKWVFKIKRRVENTVLKLKARLVAMGYSQIEGIDYDEVFA
PTTRLETLRLVLSLMASKKWKGRQVDIKTAFLNGHLDEPVYMSQPPGYEDPLHPDWVCEVTQSIYGLKQSPRQWNRELHG
VLIALGLTQSKHDPTLYFRLEKGKLAGLITVHVDDLSVIGPDSFVSSFISNLSSHFQISSNTELHHFLLNICRDLTENLV
YINQAHYIKELGDKFLSSSSIHSSVVTPTDAFFKDFLPRQTDEQPSSGHYQSLIGALLWVAQCTRADISFAVSRLSQFLR
DPSQAHWLAGLRVLKYLVSTSHLFLTLGGDPLISGYSDSDWAEDCHDQKSTTGYSYRWGSGPISWRSxKQATVSLSSTEA
EYKALSNSCREELWLRNLLSELHLRPPNTIPLQVNNEGAEALAKNPQHHSCTKHIHTRYHFVRECVANNSISIxHVSTKD
MLADMLTKPLGRVLLQSHRERFGIV
>Copia-41_BRa#LTR/Copia 67-4239  [Brassica rapa]
MSSESSNSGFMPSTATRTAVYDPANPATNLLAVNMSNITRLTNVNYLMWSRQIQALLEGHELHSFLEKTNSTPEAVINNN
GLVEPNPAYAPWRRQDRLLYSAIIGAISLPVQPLVASATTTHEVWSTLNLIFGTPTRGHIKQLKYQIKSCTKGTKTISEY
MRTIKTKSDELALLGKPLDAEDLIEQILAGLPEEYKSEIDAVNGRDSLISFSELTEKLLNREAVIVCDQPNTPSFPVTAN
AVSKSNNNNNNNRGPWKPSFTPRNNNYTNNNNFNSNNGGRGPRPYLGRCQACGIQGHSAQHCPSFKIVATDTVSHANNNS
HWRPMAHTAFVNAQHPDAWLMDSGASHHVTSDMNNLASHVQYSGPDGVVVGNGATLPITHTGSLSLKSPSRDFSLNNVLY
APSMQKNLISVNRFCKTNKTSVEFFPHMFQVKDLQTGTPVLTAPANGNVYEWPPGQPRTPLALTTTTSSSSLDWHHRLGH
PAFPVLQKISSSFSPGFSCRNLNSSHCNACSINKSHKLPFHDTSISSSRPLQVIFSDVWSSPIHSFDGFKYYLLLVDHFT
RYMWFFPLKLKSQVAATFIKYKQLVETQFNTKIATLYTDNGGEFIALRSFLADNGISHLTTPPHTPEHNGLSERRHRHIV
ETGLALLTHASIPTHYWTYALAAAVYLINRMPTKVLSMDSPYLRLFGASPNYSKLRVFGCLCYPWLRPYTTNKLQPRSTP
CVFLGYSLTQSAYLCFDPTTSRMFISRHVLFVENKFPFTSLTASTPPLEDNQEAAWMPVVTPTPHHQALVPESPTADHSP
AATPTTTTSGEPTSATTTPPTSTSSEDQPPTTESSGGITEHDNATALTQQPQHQMVTRSQNQIVKPNPKYCLSATLAPYI
EPNTIQQALADERWRKSACAEFNAAIANHTWDLVPAEEATNIIGNKWLFRIKFNADGTVDKLKTRLVGKGFHQRPGIDYH
ETFSPVIKSPTIRLLLGQAAKYNWPIKQLDINNAFLQGTLTEDVYMVQPSGFIDRDRPNHVCKLNKALYGLKQAPRAWYT
ELKNYLLNLGFKNSIADASLFFYIAKDTYLFVLIYVDDIIITGNSDEKIRGLINTLSARFSLKDLSDLSYFLGIEVLRTQ
HGIHLSQRKYIGDLLYRNNMTNVKPVPTPMSASTNLSIRDGHTLDNPAEYRTLVGSLQYLLLTRPDIAFAVNKLSQFMHK
PTTTHWTAAKRVLRYLAGTYTSGIFLSRFSNLSLHAYSDADWAGNKDDYTSTGAYVVFLGQHPISWSAKKQTGVARSSTE
AEYRAVSAAASEVRWLFSLLREVGVKVDSVPTIYCDNVGATYLSANPVFHSRMKHLALDYHFIREQVQKGTLRVTHVSSR
DQLADGLTKPLPRTRFGTLFTKIGITNRAPS
>Copia-40_SB#LTR/Copia 51-4334  [Sorghum bicolor]
MALVVGGSGGGSGDGARGGGEARLVYPSLTNTNYTSWCIRVQAIMEDREEWEVVEPDPEAAAPSAAEAAKIKAKDRKIKA
NLLQCIPDDILMQVAKKKTGKEVWDSLKTRFVGADRVKDARLQTLKSEFDALEMKDADPLDQVVGKLSTLSVQYNSLGGS
LDDAALVKKLFDIVPDRFLTVVAGIEQFYDLKTLAFDEAVGRLKAFEERTRRSNRGAKADQQVLLTQAEWEARQRGAGGE
SSGKGRGGSSGRGRGRGRGGGSSGRSGAGRGDTGKSDKSHIKCFKCHQYGHYANRCPGEKKGEGQKGDEKEQAVLLAETV
LSDELQCCQADRVQRIYLNEARVVPELLLSEGNESTGKWWYLDNGASNHMTGDLQKFRDLDRAVHGKVRFGDDSTVEILG
RGTIVFQGRLGDQWVLSNVYYIPKLRSNLVSLGQLTEMGHRIILDDDMLEVVDKQSARLIMKVPRTLNRMYKIELTTVEP
ECLMAKIDDQAWLWHGRLGHVNFRSIKQLVSKEMATGVPDIRHPEQVCSDCLSAKQTRAAFPKAAKWQSDEKLNLVYVDL
CGPITPPTAGGNRYFMLLVDDCSRWMQVYFLKNKDQACDMFVKFKAEVENFTTCRIKTLRSDRGGEFLAGVFAGVCEQAG
IKRQLTAPYTPQQNGVVERRNRTVLDMTRALLKSMKLPGEFWGEAVRHSVYLLNRLPTKVMGDKTPYEAWNGRKPSLGHL
KVFGCVAHARVATPHPKKLDDRSKPLVYFGAEEGSKACRLYNPETKKIIVSRDVVFEEKEKWNWESVFDGEIRTDFDVEL
ETGYVSDYGVDEFQQEQSVPTEQAAADEQVQNDGVTDWAQSPAAVSNQTGSLGEILAAGFSTPHHSIPALNGSTPSTVQS
SEPMRFRTLDDLYDNTSEVELVDSDVEALLVETGEPTCYREAVSHQDWVDAMDKEMQSIIKNETWELVKLPAGKKPIGLK
WVYKLKRNSEGEVVKHKARLVAKGYVQKEGIDFEEVFAPVARLDTVRLLLAFAANNGWKIHHLDVKSAFLHGELEEEVYV
SQPEGYAVKGKEQHVLKLSKALYGLRQAPRAWNIKLDKSLKKLNFRRCLSEQAVYTRGTGSDTVIIGVYVDDLIVTGGNA
DQIDTFKRQMMSEFEMSDLGLLSYYLGIEVEQNSDHITVKQSGYAKKVLMQFGMGDCNPTKFPMEPGSILNKDEGGKLVN
ATEYRKVIGCLRYLLHSRPDLAYSVGVCSRFMEKPTVMHAKAVKQILRYLRGTLTFGLVYVQGGSADKLEGYSDSDHAGD
SVERRSTGGMAFYLNENLITWCSQKLKTVTLSSCESEFVSATAAAKQALWLRNLISEITGKEPKAVTLYVDNKSAIALMK
NPVFHGRSKHIDLKYHFIRECVERGQIVVKRVGTEEQKADVLTKAMPAVKLGIMSHLIGVRDLGVCQA
>Copia-38_ZM#LTR/Copia 40-3927 [Zea mays]
MAAFADALKPEKFNGMHFKRWQVKATLWLTAMNVFHVSKGRPEGPLTPEQEKEYDHANTMFTGAVLSALVDRLVDANMQY
TDGKELWDALTTKYGASDAGSDLYIMESFHDYKMVDNRSIVEQAHEIQCIAKELDHLKIVLPDRFVAGCIIAKLPSTWRN
FATALKHKRQEISVENLIASLDVEEKARAKDTGSKGGEGHSSANMVQXNHNKGKGKPKSNKPNKTTNFKKKKNKAELTCF
ACGEAGHFAKDCPDRADRRGKKGNVNTVVASNEEDKGYGNLPFIFSVFQSPSWWLDTGANVHVCSDINLFSSYQGARDSS
VLMGNGSHASVHGTGTVDLKFTSGKIVQLKNVHHVPSIHKNLVSGTLLCRDGFKVVLESNKLVVSKSGQFIGKGYDCGGL
FRFSLLDFNNKSVNHICANVDDLASIWHSRLCHINFGSMSRLATMSLIPNITIVKGSKCHSCVQSKQPRKPHKAAEERHL
APLELIHSDLCEMNGVLTKGGKRYFMTLIDDASRFCYVYLLKTKDEALDYFKIYKAEVENQLERKIKRLRSDRGGEFFPK
VFDDFCAEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTCGLSKAWWGEAVLTSCHVLNRIPMGKEEKTPYEKWV
GRKPSLSYLRTWGCMAKVNVPINKKRKLGPRTVDCVFLGYASCSIAYRFLVVKSEVPDVYVDTIMESRDATFFEHIFPMK
DIHSNSRYSSEIXPEHXTPIESFEQPHEIVLEEDDNDAPKRSKRQRVEKSFGNDFIVYLVDDTPTTIAEAFASPDADDWK
EAVHNEMDSILSNGTWEVTDRPYGCKPVGCKWVFKKKLKPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARMTTIRVL
LSLAASYGLLVHQMDVKTAFLNGELDEEIYMEQPDGFVVKGQESKVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFAINE
ADRCVYYRCGGGEGVILCLYVDDILIFGTNIDVINEVKSFLSKSFDMKDLGEADVILNIKLIKADGGITLSQSHYVEKVL
KRFGFSECKPSPTPYDPSVTLRKNKRIGLDQLRYSQIVGSLMYLAGATRPDISFAVSKLSRFMSNPGTDHWHALERVMRY
LQGTMSYGIHYSGQHAVLEGYSDSNWISDADELYATSGYVFTIGGGAVSWRSCKQTILTRSTMEAELAALDTATVEAEWL
RELLMDLPVVEKPIPAILMNCDNQTVIAKVTSSKDNGKSSRHVKRRLKSVRKLRNSGVISVTYISTDKNLADPFTKGLPR
NVIEIASREMGMRPE
>Copia-33_BRa#LTR/Copia 131-4387  [Brassica rapa]
MSENTSPATSTETIIVSDAPKLLNVNMNNVTKLTGSNYLMWSRQVHSLLDGYDLAGFVDGSAPVPPPTLTVDGEITANTN
YVLWKRQDKLLYSALLGAISPAVQSLLATTSTAAEIWSTLAATYAKPSRGHILQLRQQLKQWTKGTKSVDEYVQGLTTRF
DQLALLEKPLDHEDKIEFILAGLPEDYKTMVDQIEGRDVSPALTEIHEKLIQHELKLAAKSEAVSSLPVTANVANFRGNT
NASRNNGRHNNRGNHNNWNSRQSHPNNQQHTPRPYLGKCQLCGVHGHSARRCSQLQLQNNFGSSSQSSVSSYAPWQPRAN
LASTPMYNANNWLLDSGATHHLTSDLNNLALHQPYMGGEEVTIADGSGLSISHTGSALLPTPTRNLALRDVLYVPNVHKN
LISVYRMCNTNKVSVDFFPAHFQVKDLSTGVQLLQGRTKNELYEWPVDSPSAMSLSAAPVSKTDLYSWHSRLGHPSLQVL
KSLVSKFSLPVLLSSQTNLSCSDCSINKSHKQPFFSNTIVSSHPLEYLYTDVWTSPLLSVDGFKYYLVIVDLYTRYTWLY
PLKLKSQVHDTFITFKALVENKFRHKIGTLYSDNGGEFVALRHFLATNGITHLTTPPHTPEHNGVSERKHRHIVETGLTL
LGKASMPKTYWSYAFAAAVYLINRMITPVLGNDSPYAKLFGQAPNYQKLRIFGCQCFPWLRPYAQHKLDARSASCVFLGY
SLSQSAYLCLQRETGRIYTSRHVTFNEAVFPFTVVNTATPPERESPSSTPEFAETTLVPLRPLITTHTTSPPCSDPHQPA
PTAPVPLPAQTALPVPLPLSPPQSPAPPNPPAPSPATSHTPHIPTPPPSPPHSPSPSPDPAPSPSPEPAQTLPPPANHHP
MKTRSKNNIAKPKTKLSLNAVKTKLKPYIPKTVAEALRDPNWRQAMCDEINAQLRNGTSDLVPPEATQNIIGCKWVFTLK
YLPNGELDRYKARLVAKGFNQQPGLDYTETFSPVIKSTTVRMVLEIAVRKGWNLRQLDVNNAFLQGSLDEEVYVTQPPGF
VDKDRPHYVCRLRKALYGLKQAPRAWYMELRKYLLTLGFKNSTADTSLFTLSHGSDCIYVLVYVDDMLVTGSNNALINKF
VSTISSRFSLKDLGELSYFLGIEVTRTSKGLHLMQRKYVVDLLTKTKMLEARPVATPMAPSPPLSLASGSPLSTPTEYRA
VLGSLQYLSFTRPDIAYSVNRLSQFMHKPTDLHWQAVKRILRYLAGTPAHGILIRADTPMTLHAYTDADWAGDRDDYCST
NAYVVYLGGNPISWSSKKQTSVARSSTEAEYRAIANTASELRWVCSLMTDLGIPIPTVPVIYCDNVGATYLAANPIFHSR
MKHVALDYHFVRGYVQSGALRVSHISTKDQLADALTKPLPRPRFIELFDKIGVTIVPPS
>Copia-32_Mad#LTR/Copia 83-4468 via tfasty with Copia-71_Mad, 67.7% SW:2737, 1 stopcodon. [Malus x domestica]
ANPDNSALSSATSGASRTSDSLTQSTMAGFTSALPTSFNISNLFNTPMDRTNFLSWKSQFEDVLELHDLGIIVKLEDKPA
KNLSDGSLNPLYAKDKLVLSWIKATTSPSIKTLLIPCSTAFEAWILLxKRLSPLSKTHVRTLRDQIRTLKRILDQQMSDY
LIHARSLFDSFAAAGTPMTDSELIEYILDGLGHEYKEFTTSLHLRQTLSFDEFFDLLLQEEQLQKRMEALSLSNGVALAT
DRVAQNHPHNRPQTNNSKGHGRGRGRGRGRNWNNGRDNFDHREHGRNFNHDRDGGWRNNRNGGNKWAQNNNANGTLYYGN
PRHNPIPPDNHPQLLPTPSNPSAFQFDVPCQQCGNDGHNSRVCPQRGNYAYTADHSGAISDPIDWCFDSGATHHMVSDPR
ALTNVQPYTGTDSIIVGNGSHLSIMYIGDGKLCTPSSSLHLKEDLCVPAIQKNLLSIRRFCHDNDCYFIINAYGFCVKDN
KTGKVLLVGSSFNGLYHIHAAPKVTEKIVFYGEKTTQDVWHTHLGHPSYHVFRMILNKHHLPISGEIDSNKTCHVCPMAK
SCRLPFSNRTSHTQKPLELLHLDLWGPAPVLSNFGYRFYLSIVDDHTPYVWLYPLLKKSDVLATFIGFKKIIENRPNLNI
KMVQMDGGGEFTSRLFMQFLRDNGIGHQISCPYTPQQNGVVERKHRHIVEKGLCLLTQSPLPSSYWAEAFSTSVYLINRL
PTVNLDNISPYEKLFQHPPDYKMLKAFGYACFPHLVPYNKHKLMPKSVKCVFIGYDLHYKGYRCLDPITGRVYISRNVTF
DELTFPFSELTSRNKEDAPFSLPTPAPVLIEPIAPLSSLVHTPHMAEPNMPTTPNMAAPPTTATSPQMVTSLDTATTPNM
AATSHVIAAISPPSSHILATSTTPPASPDHSPGHNKFCSINSLIYSTSPHPLPHALAAILNDPLSHEPSSYSQAAKHTHW
QHAMQVEYDALMHNHTWSLVPYSPSMNVIGCKWVFKVKRKADGSIERHKARLVAKGFNQQEGLDYDETFSPVVKPATIRT
ILSLAVSFSWTLQQLDVHNAFLNGILHEEVYMKQPPRFVDPSCPKYVCKLHKALYGLKQAPRAWFQRLTSFLLTQGFFHS
HSDASLFIRHGSQSSIFVLIYVDDIIITGYNATEISSFIDVLCSKFDSRRMGDLSFFLGLEINRTSTTISLCQTRYALDL
LKKFHMESCKPSPTPLSSSTRLSSLDGDPLIDPSTYRSIVGGLQYLTLSRPDIAYAVNQVCQFMHAPRTTHLQSAKRILR
YVKGTLSHGLLFHKAPHFNLYGFLDSDWAGSVDDRRSTTGACIFLGPNLLTWTAKKQSTVSRSSTEAEYRALATTAAEIR
WFCYLFREIGIALRVPPCIFVDNMSALHIAANPIFHARTRHIEIDYHFVRELLNFGVLRTRYVPSAHQLADIFTKGLTRE
RFHSLVPKLKLHYVLSRLGGGV
>Copia-34_DPu#LTR/Copia 629-5187 via tfasty with Copia-7_DPu, 78.0% SW:4640, 2 frameshifts and 1 stopcodon. [Daphnia pulex]
MTIIRRLLINIFYFLSQEFDDEGEITNEAEIKQWTRKDVLARNCIMATTSKEMKENLYTCTSSAQMWTRLHQQYHLQTEE
HLHVLWQNYYDYSYTDGNTYSVSLKVPFIDLLDLLSLRLGDDMRTYIQKLSITADKLRERDQPLSEIQIVSKALTSLPET
FRIVRSVWASVPAQDRTIDHLLQRLLTEENVIKSYQKKERSTEGAFSANSGSRGGFGRGGYRGRGRGVRGGFVDKQTRGQ
YGANQDKRPRCNYCKIVGHIENECYKKHGYPDTRNRGNDKNEEGRTDNSLFSSSRFDPRSIFAFFADSGATKHMCDQRGF
FTTFNPINTGTWSVSGNRxIHLFILWHFLKQKIIIVVSLPGIGNAKLDVLGVGSINIAVKVNGVTTPRILQDVLYVAGLG
VNLFSIGAATANGLKACFENNKVESIYLSIYNAYVWQLTHLHFILKVSFMRDEEVILTGERKDDTLYQLDFQPELQTTET
IYAHVCSDLFQDTALGADIRASLITWHQRLGHIGYHTLVKMIRQDLVAGLNIAGECEIPETLCSGCELAKFTRLPLKIGR
HRASRIGELTHSDVWGPIATSSLGGARYFVSFKDDFSGFLTIYFMKRKNEVPAFIRLYHAMLLNETGFYMLTLRTDNGRA
EYDNHEADKFLTEAGVRHETSAPHTPAQNGTAERVNRTLLNSVRAMLISSGLPPSLWGEAISYSVYIRNRVLSRTNETTP
YALWNSRQPDVSAIRIFGSRAFIRDPTPSSKLKARSLEGVFVGRCINQNASRVYIPETRKVLISKDVKIDETILYRDMTK
DLPILTVKKKKKKKKKKKKYSKLFFWHHADIISFFSPTDELDIINDKHDSGTSIATPTVVDGHQDTTVPLTADDDNQCVD
GTIPQGDMVTDLPSSINSQDVPDDEQDFGSSFIPPVSIAHQDLATDHAIQDDAIIPNCEPVEVEDAITRRNTQQTRQSSR
KPKYSDKYRIYMESLAKQAILYGMPAEHQPEMSKPTEPCSYLEAITCEDAKFWIPAIAEEYDSLIRNSTWTLCQLPAGRK
AIEGKWVMKFKPGFKTTAPRYKARFVIKGYSQVYGLDYTETYAPVVKNYSIRAIMAIVAARDLEIVQLDVKTAFLYGTLT
EEIYMQQPEGFVIPGREQEVCRLIKSIYGLKQASRVWNIKFNEFILLFGLTRSTADPCVYYRHLRPGEADEEITIFILYV
DDGLIISSLKTVLTEMMNFLGKEFEVRSLPADRFIGMDISRNRVQRTIHLSQPEYTKTVLERYGMSNCATLSVPADPCVK
LTPQKCPQTEEEKQEMKCVPFMECIGSIMHLTHLTRPDIAYAVGQASRYSQNPGQEHWKALKRIMAYLRKTVNFGLLFGG
DNSELIGYCDADYAGDLGSRRSTSGAVFTLYNGPISWFSRRQSCVALSTTESEFISAAEATKEAIWLNRILIELGARALP
VPLRCDNQGAIALIHDPVFHQRTKHIDVRFFFVRDAQAEEKINISYIATESQLADIFTKALAAPRFEKLRASLNICEFK
>Copia-37_Mad#LTR/Copia 104-4371 via tfasty with Copia-10_Mad, 1 frameshift. [Malus x domestica]
MGDEMIPHVSDPLILHHSDSPSLVLVSQLLDGHNYGQWSRSMRIALSAKNKLGFVDGSIKNPATTDAKYSIWQRCNDMVL
SWIWQSVQGNIAHSILYCKTATAAWRDLEDRFSQGNDSRIYQIRQEIVEHRQGQLFVSDYYTKLKALWDELASYHEPIAC
ECEGSKAHADREEKERVMQFLMGLNENYSTIRGSILMMSPLPDTRRVHGLVLQHERQLDVVNRREPTAHAMQASRSTAPK
GGYGAHNPSSRKTFKCSYCDGGHPVERCFFLIGFPEGHKWHGKNVQPRNRRTPPASNNVETLPLTTAQIDTTKAPISSNQ
PTFTTEEYHQLMALLCNKNGTNLPLVHAAGIYTPNCNFTQHSLHSPLYWIVDSGATYHISHSSPIHNHTRPQHDFVGLPN
GGQAAIESIGSIKLSPKITLDRVLHVPQFRVNLLSVSKLTWALKCVVIFYPGFCVVQDMATKKMIGLGKLFNGLYYLTPT
QNPHLANHVNHTSTLWHQLLGHPSSAPLHSLSQTIPEIIFDSTHVCDICPLAKQTRSSFVSSSIKSIAPFDLIHCDIWGP
HQTHTTSGARYFLTIVDDFTRFTWVHLMRFKSDTQTIIHSFFSWVKTQFNRDIKTLRADNRGEFISLRSFLDTHGTFFQH
TCAHTPQQNGVVERKHRHLLNVARALRFQANLPLKFWGESVQTAYYLINRLPTPLLSHQSPYKLLHRTPLVYTHLRVFGC
LCYATNLTPSHKFNARARRCLFLGYPLGQKGYRVYDLDSKRIFTSRDVTFHEHLFPIANLPPEPDHNTPVLPVPHDDPTP
APSDLLPTIDLPASLTPSLPPDIPPPTPATTTSPTPAPSSPSMPLIPLRRSERIKQPPAHLRDYQTHHAALLQHNVNSST
MSGTRYPLHRYVSYARLSPAHRSFVHNVSHLVEPASYEQARHDPHWLVAMNSELEALEANHTWTLVPLPLHQCPIGCKWV
FKIKYHSDGTIERYKARLVAKGFTQREGIDYKETFAPVAKLITVRCVLSIAAVRSWSLHQMDVQNAFLHGALHEEVYMLP
PPGYRRQGETMVCRLHKSLYGLKQASRSWFQRFSSTIQEIGFQQSHADYSLFTKVCGHSITVVLLYVDDMIIAGNNEEAI
SQLKQFLSGCFRIKDLGPLKYFLGVEVARSKAGISICQRKYTLDILEEAGLLGVRPAKVPMEPDLVLTTTGDDALKDPTR
YRRLVGKLIYLTITRPDITYAVNNLSQFMQEPTLHHLKAAHRLLQYLKEAPGQGLLFPTENQLNLIGYCDADWARCPITR
RSVTGFCIFLGKSLVSWKSKKQVTMARSSAEAEYRSMAATTCELTWLRNLLNDLRVNHPEPARLFCDNQAALHIAANPVY
HERTKHIELDCHTVRERIQRGEIKTSHVQTGRQIADMFTKPLRAPTFHSHLGKLGVIDIHTPT
>Copia-36_BD_env#LTR/Copia 7848-9305 via tfasty with Copia-33_BD_env, 52.5% SW:153, 1 stopcodon. [Brachypodium distachyon]
DRGNDPIITPSPKKLTTKKRAEIVIKERQREKLDLAKSKFSRRKSTSKAQPSKFPIKHWPEQVFAEERFINPYLKDPDSD
LKDCNHHFHTNFQIRIFEEIYLPPKTKVVPQCSINVEAMQADKKYFGEALSICEKLNLFPIMTFNQAYDETLVAQFYATV
FQEELDDxNVRRVSWMSRSHFCTATWGEFANLLGYENAGHCTPSGFRPHDNDAAAKKVLKPLYLEGRVTPGGTKFLKPTY
DILQCIYRETIACKTGNSDEIHGFGVNLMLETHRRKNGDTPLDVMDYLWHGLYFSILHRRVPPYAPYIMKLILGKAPLMH
DVDFVVHPSKQLKKKRHLPPPLNNFQAPVDYEEDEDIPSDLGLGPSSHTRGSSKQGGWKGMLRKIFCMQQSNERKLYKVE
QVNHRILRRQERILNHLDLPSSPVSDVENFESWRSTHGDWNRNDGHFPSPIRGDEEDEDDDEDEVPAAEGSEDEDEEEDT
DDDFSE
>Copia-10_GM#LTR/Copia 120-4283 via tfasty with Copia-91_GM, 80.8% SW:3780, 1 stopcodon. [Glycine max]
MATTNGNFPANFPVLDGRNYDQWSMKMKAILGYQDVWDLVVNGLDPLPVNPTAAQQAIYRDAKKKDCKGLCILHQCVNQA
IFEKIARSETSKAAWDVLASSYAGDQKLKKVRLQTLRRQYELLGMEESETIATYFTRVQTMTNQMQSCGETLSDEKIVEK
ILRSVHSRFDHVTVAIEESKDLSTLKLEELQGSLEAHEQRMNERKSVKPSTEQALMVESGNRSRDSQGGRGRSRNNYRGG
KGRGNNCNSNSGRRNSSNNYNSEQKNNSSENYRRRGGRGGRGRGGRGGRKTDKSHIQCYNCEKYGHFADECYSNPSHTDA
RLAQEEDEKEEILLMAVEEEIGDDGVEEVRKEKVDIEEVLYMVTVKDESDHGDNWFLDTGCSTHMSGKKEWFVEIDFTVK
SRVRFADDRTMKVEGVGKVMIKKRDGSKCFISGVFHVPGMKSNLLSIGQLLEKGYKMVLEDCAMKVYDNERRLLIKENLS
KNRTFKVELDVLVQQCLASTIDKEEWLxHFRYGHLNFTDLNRSQSKGIVKGIPHIKVPNDVCGECIKSKMSRNSFNQNVS
TRSKRKLQVVFSDVCGPIQHMTPGGNKYFVTFIDEFSRKLWIYLIKRKSDVIEVFKKFKVSVEKQCGKNLEILRTDGGGE
YVSAEFAEFCEKEGITHEVTPPYTPQHNGVAERKNRTLLNMVRSMLKSKKLPKYLWGEAVNTAAYILNRSPTRKLENITP
EEAWTGVKPSVSHLRVFGSICYRHVPDQLRTKLDDKGEMMILIGYHSTGGYKLLNPVNNKIVISRDVVVDESKDWEWNVT
PEIEKQNQVELQLEDSDTVTVQENEIGEGNAEGPRRSLRQRQVPQRLNDFEMLNDGAINDEGEIVHFALLAESEPFTVEE
AMQNKKWIKAMNEELNSIEKNNTWELVELPKNKKAIGVKWVYKVKVNPKGEVVRYKARLVARGFLQRQGIDYEEVFAPVA
RLETVRVVVVHASLRGWKLHQLDVKSAFLNGDLQEEVYIDQPPGFVVKGSERKVFKLRKALYGLKQAPRAWNMKIDKSLT
NLGFVKCRSEYGVYVKSGGEDIMMLCLYVDDLLLTGNNEAKVNEFKKNLMDEFDMTDLGELSYFLGIEFKKCSEGIVLTQ
QKYATDILHRFNMQHCNSAETPAEAGLWLDRDSEEDLVDATEFRRIVGALRYLCNTRPDLVFSVGLISRVMDRPRVSHLN
AAKRILRYVKGTIGYGILMPINHSENTRNLYGYTDADWCGDKSDRKSTAGFVFLIDSAPISWSSKKESVVALSSCEAEYI
AAAMGACQAVWLDTLMQELKIKEEGPVELYVDNKSAIKLAKHPIAHGRSKHIETKFHFIRDQVAKGKFKLKFCRSEDRLA
DIFTKSLKSETFKKQRSMLNIVDSRKLA
>Copia-10_BRa#LTR/Copia 84-4474  [Brassica rapa]
MSSSTNNSTAGVTEITINNQTVFAINMSNVTKLNSTNYLMWSLQTHALLDGYDLAGYLDGTIASPPPTLTNDDQIVVNPA
FSLWKRQDKLIYSALIGAISPSLQPLVSRAATSFEVWSTLASTYAKPSRGHIKQLKTQLKNWKKENKTIDVYLQGITTRL
DQLAILGKAVDHEDQIDLILEGLSDDYKTVVDQVEGRDLPPSITELHERLLNHEAKLLTATDDVLAQAPITANVAQHRNN
HSANYRNQNRPRNNNQWTPQQYQQSNRNDSKGPRPYLGRCQICGVQGHSAKRCTQLQAFQATSQQPPPTPFTPWTPRANF
TAANSYNPATWLLDSGATHHITSDLNNLALHHPYQGTSEVMLADGSTVPIQQSGFTTLSTLSRPLQLPHVLYVPNIDKNL
ISIYKLCNSNGVSVEFFPQSFQVKDLSTGVQLLCGKAQNELYQWPRAVPQVNTASLPSAKATLSSWHSRLGHPSTSILNT
VVSSFSLPVSLPSQKLLSCNDCFINKTHKLPFHQSTITSIRPLQYLYSDVWSSPILSSENHKYYLVIIDHFTRYTWLFPL
KQKSQVKETVIVFKNLIENFLQAKIGTFYSDNGGEFIALRQYFQMNGISHLTSPPHTPEHNGIAERKHRHVVETGLTLLS
KASIPKKYWQFAFVVAVYLINRLPTPLLELQSPFSKLFGKSPNYNKLRVFGCACYPWLKPSTRHKLEDRSARCVFFGYSP
TQSAYLCYNVANNRMYCSRHVQFDEFTFPFSDSDTQSPRSLTTDTDTEPVYTPTSTALPLRPSSQVPHPAVSSPMRPPAT
TTTNAQVSPSNFQTPSVSSSSEPTAPTQNGPPPTAQTDQAHQIISTHAPIIPQSNPNPDVSHIQNENQQTNPNQTQTVPP
VNPTTEISNQQPSPNQTETTNSQSTSSSQPPPQPEITNSHPMSTRAKKGITKPNSKYLYAINLTDNTEPRTIIQAIKDEK
WRKAATAEFNAQLNNHTWDLVPKPKGDVTIVGCRWIFTIKYNPDGTIKCHKGRLVAKGYNQLPGLDYSETFSPIIKSTII
RIVLGVAVDRNWPIRQLDVNNAFLQGTLSDEVYMSQPPGFVDPTRPHHVCRLRKALYGLKQAPRAWYDELRSFLISIGFT
NSVSDTSLFILKKDRSLVYILVYVDDILVTGNDNFIIQQTLTALAQRFSVKDHEELHYFLGIEAKRGPQGLHLSQKRYIL
DLLERTNMLGAKPVAIPMATSPKLTLHSGSSLTDPTEYRRIVGSLQYLAFTRPDLSYTVNKLSQYMHSPTSDHWNAVKRA
LRYLAGTVDYGICLRRGNSVSLHAFSDADWAGDGDDYVSTNGYVVYIGHHPVSWSSKKQKSIARSSTEAEYRSVANTSSE
LIWITSLLHELGIPLTGTPTIYCDNLGATYLCANPVFHSRMKHVALDYHFIRNQVRSGALRVVHVSTKDQLADTMTKPLS
RQSFTSVIGKIGVMKLPPSILRGR
>Copia-10_SMo#LTR/Copia 25-4130  [Selaginella moellendorffii]
MEGKPSIREFDGEGFEGFKIHLESYLLFHGLLGIVDGTESSPAPGSSAAEVRDWNLRDSKARGSIAMCLSSNVLFAAPSI
PKSTAAELWKWLSDTYGTKSEMDVFNIHSQMDSLRLEENGSIQTHTAKLQGFFTQLAAAGAKHCLTDEQQRLRLYRSLPA
SWKNAVESLLLQPGMTWADAVRSLRNIEAMRSERAEMPQAMYASQASGDAQVAKPHAAANAQKGQNSVASGRAKPRLAKN
QCARCLEMGHWARDCPAPKPVKRLATLAKANLLERDGIATANEAVEELYNAEAIAAPSRWLLDSGCTNLMSNKKSLFECY
QPSIGKRGVHLGDNTTIPVDGIGQFRLSLDHGRTMAFDGAMHVSTLRRNLMSVAKICDQNAVVVFDAKGVSLVDSSDFHM
LGTQLLRGSRIGDLYEITAVDPVQAFQTVEADSRAELWHKRLGHVHYQSLQRMKSQDIVTGLDFRRIPSTFCEACVLGKH
HRRNFSPSKHRALGLLDLVHSDLCGPMDVPSHDGARYFITFIDDYSRRTCIHFLMRKSDAVAAFQTYKAYVENLLGRKIK
ALRVDGGGEYLNNELRGICRDVGIRLQATARYTPQQNGVAERKNRTLVNAARALLADAHLDKMFWQEAIATAMHVQNRLA
TAALDGKTPEAFWTGSTPDVSHFRVFGCAAYAHTPDQLRKKLDPKSKKFIFVGYAQDDTIGRKAYKLWDLASHKAIVSTD
VMFNEDDFPMRTEALQDPSFIAETRLVPLIPLMGDGPLLPPPQDPIHELPPEIPLGNPPLLDMLEPADAPPVEDRPPTPP
PPCRRRGMPDPMPVLDHPRERRPSLKVRENAEADAAELDDFCGLVDIGIPMTYDEAISGPEASSWMEAIAEEVSSIRANG
TYVPVDSAPPGRRVLDPKWIFSKKYGKDGQVVRYKARLVVRGFRQVHGLDYDETFSPVVKMASLRTLFALAAARKWQVHH
MDVKTAFLNGDLQEDIYMHIPPGFEDDVAPGGPIWQLRKALYGLKQSSRIWYQKFDATLRAQGFRRCHADHNVYVNGHAE
RMVIVALYVDDLLIMGDDNDAIAALKDALSQQFQMKDLGQVSYFLGFEVTRDPDSGGYMLSQRRKVEVLLDRFGMRDCHP
VKTPMVVGAIDLTVEQSGEPLPTGTPYRHLIGCLTYLALMTRPDITYATIALSQYNTSPTTIHWQAAKRIVRYLRGTMDY
GIAYSGGDASLACYTDASFANNKGHRSTSGICLSFSGGAITWASKRQSVVALSSAEAEYIALTTGSRDVVWARGLLAELG
CAQAGPTTSWCDNRSSIAMSKNPVHHARSKHIEVQFHYVRELVDGGTLAVQHLGTQDMPADLLTKPLGPHQFQLLRDRFG
LVSGFGLGG
>Copia-11_PGr#LTR/Copia 42-3953 via tfasty with Copia-16_PGr, 85.6% SW:4418, 1 stopcodon. [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MSDIEDKSTKSSIPKLDDLNYPSWSVRMKAYLRSKDLWEICAGEVTPAKKKRNETLNAIISHLSEEALDATVTPENEENP
ALLWASIVERYASSSVNNKARVWLKWMRYEFNGNLNNYLADCQKMIRECALVQLGIPDDIISISILAKLSKDYWNVVDNI
IMNEAIIFFPSRTLKKLRELVYMKDTRVSGASKVESTSKNQAIGPSAYKSEAEVKTKKSDKTKQPPAHPCSPGKHNPLAF
HPIWRCFKLPIEEREALRPKDPEAHTTSVDSVNKEGEDEEEVVEVSAYLNSSAEKKAPILDSGASHHMVNDLSIFSKMKD
VNINIHTGSNQKVSAIATGKAYISDDSGSIIKLDNVLYAPDLHRPLVSLNRLFDENASLSKSYDSFKIKFDNNFSLSGII
RNNLLEINNEFAMQDEFSLYYASTSSKTLIDWHARLGHPSHPYLKRLVENAVPVDCTTCKLCKAVKLPFKGKFAPTSQVL
EAIHLDLVGPFQTRSVGGAQYFLTIVDQFSGFKMIKLLKHKSETLNKFDEFVCWAENQTGHTIKRIISDNGGEFRNMFFE
DFCxNRGISHQFSPPYTPENNGMAERSNRAILDKARCLFAQANLSPRYWAEAVVTATDLCNLLPSSSRDYKIPYKTFFGK
DFNCSKLRCFGCMAYILIPEETRSNKLLPRSEKAIFLGYSDDFSTYRFIRIESKTLCTTRNATFDESIFPSLSNESLDES
SFYFNPFEVIPSEDDDDDVQFHPFPSQERPLEDSLSPSNEIIGDISPENILSYSRRGVPAESFNSTLSEDDTLTYNQVMA
LSDREDWHAALVKERNNMGDYEVWDVIERSSVDKPINCTWVFKIKPESSNQPQEYKARLCVQGFKEVYGKDYNMTFAPTG
KLVSLRLLITFALQRKYEFHQIDVKCAFLNAPIRERITLNPPPGIDVPSNKVLLLKKALYGLKQAPKEWHLTLSSWLLSV
GFNRSYAEPCVFWSANTWLYVHVDDIAIFSPEPKVFKDLISKRFKIKDLGSAKHLLGMKVTQLDSSVHLTQTHYIESTLK
KFNCQDLIPLATPMRPNGQLVKASKTEIDELDKLQVNYRSLVGALNYLSVTTRPDITFTVGCLSQFLKNPGILHWNAAVH
VLRYLKGTKDFGITLRSTPVDQVNFVSFVDASWASCHITGKSTTGYLILWNDNLISWRSKKQSTTSLSSTEAEYIAITEV
TKELLWLKMVIDSSLKLPMSLPLEIFEDNQGAILLANNESNHSAFKTKHMNLRFHFIRAEIIAKNIVLTFKRTHLMLADF
LTKSIGRSSIFKVLKVLRAGMPPP
>Copia-11_BD#LTR/Copia 467-4923 via tfasty with Copia6-PTR, 1 frameshift and 1 stopcodon. [Brachypodium distachyon]
MTSSGYVAIPRCPVIFDGINYTDFVAHMRIHTRGLGLWGALCGKVPCPPSPVQPVEPSPLVPPTVDPTASQDIVAAAKKA
GDAAVVAYEQRLSDYKLALDDFRVALVAYTHWMDADARASAVLVSSVLPQFSSEIVGLSPAFQMWTHLSQRYQPSGDTLY
LFVVRQEHELRQGDATIDEFYSRSSAIWRQLDSLRSTGCGTCSCCQTARADKEFHRLYEFLSRPRKEFEPRHAQLFARVP
HVTLLEALTELRAEETRLRGAGLLEIPTVLAARPPATLATPRSSASAPLLPTPAGGSRPPSGGGRPHCTYCEKDGHSYSS
CFRRKRDLSRGSSSSGTGSSTSTSTSTSSALSSIEQEIARLRRMLAATGSPSAGSAGSATESSSSERPPPQSGTFPWILD
FGASFHMTSDSSILSSLRPLDSPVHVLTADGTSLPVASQGILSNSTFHVSPVPHVPQLTMQLLSAGRLTDSGCRFILDPD
SCSVQDRRTSALVGAGPRCRDSQGLWELDWLRSPSAAPVASLSTPVVMSTSSFQQWHHRLGHLCGSRLSSLVRRGLLGSV
SGDVSLDCQGCKLGKQIQLPYPHSESVSKRPFDLVHSDVWGQAPFILKGGHRYCVLFIDDFSRFTWIYFMSSRTEVLSIY
QKFAAMVHTRFHTPIRVFCADSVGEYTSRSLRGFLAEQGTLAxFSCPGTHAQNGVAERKHRHLLETTGALMIAASLPPHF
WAEAISTAAYLINIQPSSALKGGIPLECLWDCSPNYSELRSFDCVCYVLLADRERTKLTAQSVECVFFGYDDEHKGYRCW
DPNARRIRISRDVTFDESRPFYPRPSSPEVTPVESLFFLILSDTSIPASRLSDRSIVSSHPPFETSPPSSPPHTPDSPDQ
PQHSPDAPSTLVPPVPSYPFYYTRRSRLSATPVSPVRLSSPDISDSPVQLSSPVQTSDVPGPSGEVSSTTVQPPVPSYGL
RARPLPTVDRYGFAGAAPLEPSSYCDAVVHPEWQHAMAEEIAALERTGTWDIVSPPPRVRPITCKWVYKVKTCSDGTLER
YMARLVARGFQQEHGRDYDETFAPVAHMTIVRTLLAVASVHHWSISQLDVKNAFLNGELREEVYMQPPPGLSVPDGMVCC
LRHSLYGLKQAPRAWFECFAYVITVAGFSASAHDPALFVHLSPRGRTLLLLYVDDMIITGDDPEYIAFVKAHLSEQFLMS
DLGPLRYFLGIEVSSTSDGFFISQEKYIQDLLARAGLTDERTVETPMELNVHLRASDGEPLSDPTRYRHLVGSLVYLAVT
RPDISYPVHVLSQFVSAPTHVHYSHLLRVLRYLRGTVSRRLFFPRSSSLQLRAYSDATWASDPSDRRSLFAYCVFLGGSL
IAWKTKKQVAVSRSSAEAKLRAMALLIAEVTWLRCLLEDFGVSVTTTTPLLSDSTGAISIARDPMKHELTKYIGVDASFM
RSCVQDQVVDLQFVPSELQLADFFTKAQTRAHHGFYLSKLSVADPP
>Copia-9_TC#LTR/Copia 151-4774 via tfasty with Copia-12_Pru, 69.7% SW:2920, 2 frameshifts and 6 stopcodons. [Theobroma cacao]
MTNTRTNFSSSFEDLQMANQLGSKTSVSPTENPxSPFYLHHSDHPGLLVINPKLTTNNYVPWCRSFLLALSVRNKVGFVN
GNILKPEPVDPLFESWNRCNDLIVAWLLDSVTAHIASTIFYMDNAMKIWNTLKQNFAQLDDTRVCNLQYTLGNITKGSRS
VDIYFIELKGVxEEMRNFRPLPRCECGKCNPNCFKKYTEQYQKDMTFRFLNGLNDSFSGIRSQIILMDPIPSLDKVYSLV
LREETQRNLLIQGQSVLESTAAIATIFKGKRKLKSDVICSHCNKKGHVKERCFRLIGFPNDFKFTKGKRCGFKKGKSIVN
QVSAGNNVDAEYLQQNHEDGIEVLDFDSQLFMIKQQIHKLVDLLNGSGMNVNNDKSPSSIPSSSNHQAKHSLINSSFAGI
ISGISCFNTVNNLPTRYKNVNPFMIKxSSWIIDIGATDHMCCTLDKFISIKLVVNRYVQLANNTRAIVSHIGIVKITSLL
TLSNVLYVPSFKFNLISVSQLIDSTSNSVFFTDKVCIIQDLTSWTMTGVARVYSGLYLMQDSKDEKDLSKFNLKKLVDFS
IVSSFTSCNSFSNKPCASAPRSFDLWHFRLEHPPIEMIRVLNKQVPNIHCSNDLLCEICPLAKQKKNFPFSIHIQSSKNA
FDLIHVDIWGPYEIPTLSGQRYFLTVVDDFTRFTWVFLMKYKYDVSSIIPAFQNFVKNQFQTSIKIIRSDNGLEFKLPDF
YAKTGIIHHLSCNENPEQNGLVERKHQHILTVARSLLHQSHLPMSFWGDFVMKAVHFINRIPTRLLSNKTPFELLYHALP
TYDHFRVFGYLCFASTLSQHRKKFDKRASKCVFLRYPNGVKWYKVYDIDAHKVLVSMNVVFHENVFPFSLSKGYSSDVPT
FYQTPGVLASIFDHFQVSSNVLPNYDPPLVSCQSGEHDIYLENHFSSNSIDSTQNFPIDSTDHVPNFSNHVTPSSVSVQP
DVNSLPRRSYRARHVPKYLEAYHIDIPSSSNNVTSYPITDYLSAYKLSSTHESFTLALSQIHEPTSYHQAIQHSHWKDAM
ALELQALEDNKTWSVVPLPSHCHTIGCKWVYKVKMKANGNVERYKARLVAKGYSQVEGFDYQETFNPVAKQTTVRIFLAI
AAAQGWCLRQLDINNVFLHGDLEEEVYMEIPPGYIVQGEYSSDTKLACKLHKSLYGLKxASRQWNAKFTTSLIRYGFKQS
LSDYSLFTMSTGDGNFAALLVYVDDIVIGSTSDQLVDNIKEYLSTQFKLKDLGIVKYFLGLEIARSPERISVCQRKYVLD
MLEEYSLLGAKPVSTPMDYNYKLQKSTKDYRLKDLTIYRQLVGKLLYLTFTRPDVCYAVQVLSQFMDKPSNDHLATAFRV
LRYLKGAPGQGLLLHSQSNLQIQAYSDSDWASCPNTRKSVTGYALFLENSMVSWKAKKQSVVARSSVEAEYRSMATTSCE
IIWLKSLLAEFGICQTNAIKLYCDNQFAIYISKNPMFHxRTKHIELDCHFIREKIITGLIEPVYISTADQVADIFTKALQ
PKDFYRLLSKMNVYDIHSSSxG
>Copia-7_TC#LTR/Copia 51-4088 via tfasty with SHACOP4_MT, 78.7% SW:3431, 3 stopcodons. [Theobroma cacao]
MSFLFFFLPQIVPAYHPSFLLENLIVFTKASSSFNATTPPIFTGENHVIWAVKMKAYLRAFDLWEMVEVGGDPPVMRHAN
PTIAQLKQHSEEVVRRYKALSCIQSAVLDIIFTRIMTCDNPKEAWDRLKDKFHGSERTRxMQALNLHREFEILRMKEDKT
IKEYSDKIMKLVNQLRLLGEDLSERRIVNKVLVSLPEKFEAKISSLEDSKDLSQLTVAELVNALQAQEQRRSIRNGGQME
GAFMVRSHGKVVSNSQRRYDHDKKEKDRRNSNEKQGKGKAKFQPCSYCKKRNHLEKFCWFHPNVKCRYCNQMGHVEKVCK
AKANNNEEKVTIMEEKEDCDEALFMIKITKKHIRNDVWxINSGCSNHITGDKEIFIMLDSNFHLRAEIGNGDFIQIVGKR
TVSVQTTSGIKTISNVLYFTEMSQNLLSVGQLLDDKYSLWFKDKSCTIYDPAGIEIITVAMKNKCFPIDFMKNEFIIYQC
CANDAILWHKRLGHVNYGSLKLMASNNLVDGLPIIGAVDHICEICQFGKQNRNSFPKSSDWRARTKLQLIHSDVGGPMRT
PSLNGSLYYLIFIDDLTRFCWVYFMKKKSEVFDKFIRFKAMVENEIDLTMKILRTDNGQEFCSKEFEDFLTRYGIKHHRT
VSYSPQQNGVSERKNKTLVEMARCLLLGKNLPTKFWVKTVNVVVNLLNVLPTKALDAMSPYEAWNGEKPSVAHLRVFGSI
YYVKVPDEKRKKFDSKSQVAIHLGFSDTSKGYRLFNVHTNKVFISRDVKFDEDHKWNWEKGIVESSRNFNITADVLPQNF
NDDEDIEDENLAVRGTRSLQNIYERCSSVIMEPNSFTKASKDKRWLQAMHDEIEMIKKNQTWHLVDRPANQKVIGVKWVF
KTKLNADGTVNKYKARLVAKGYAQEYGVDFSVTFAPVARHDTIRLLTALVVKESWKIWHLDVKSAFLNGFITEYVYIEQP
EGFVEKGSESKVCELVKVLYGLKQAPRAxYERIDCYLRSEGFNRSINEPTLYVLSTNGFVNLLVSLYVDDLLVISLDSYV
VDDFKVKMNQEFEMTDLGEMTFFLRMEFIQKPGYIGIHQTKYAKELLKQFKMESCKAVDTLIVTGNKLCKDDGSSQADSS
NYRSLVGCLLYLTTTRPYIMYAASVLSRFMQNPSELHLIAAKCVLRYIKGTYDYGLKYFKKESKELLGFCDSDWAGSLED
SRSTTGYCFSLCSAVFTWSYKKQEIVAQSSAEVEYIAAASAANHAVWLRKMLYDLGFEQNGGTKLLIDNQSALAIANNSV
YHGRTKHIRVKYHAIQDAIKEGEIYMEHCLSKDQLADIMTNGLNKDLFVALRDRLGVTKLNLKEVC
>Copia-7_PGr#LTR/Copia 156-4661 60.2% sim to Copia-22_MLP, SW:1472, [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MVNTRSEHPELVTPNFASRVTPPRPNNPSVVDQSVEASFFQSADKSFFSMTGEHQTSTGDSNTNTPPINPSSNQNRIPFP
STSTPQNSQDSTDANQNVQGKGKASVEDNNKKLLPSRLLSQIIASELEKSGLSGIDDNLLKVLLIRNLTQGTINSEQATS
SSSKSLISDHLKWHQLGKDLSPHLSMDGSNFPSWSAALLDVVKRVTGIEKYFEVDRSAVDSATAAGVLTVVQQSIDPVLR
SSLNGLTAYGAYGSLKGRFAATSWSLLLNRWSDIAQAPDASDSISSSYEALKRSWYDLEERLGGWTTDKLLSLSFHSTVK
RYQQAMADSMDARIAIKPDQVVTSEDLLHMATRLHQSATASGSVSAMSVSSQPSRGQPSNFSRGGRGRGNYRHSRGSGRQ
PNQSSRPQSGSSTPPPDNWARQYLTPEFPCNLCWEWGHWAPDCPRVKNNLPPLDDPRKTNPAWKPKKSTVLSGRLFQSGE
LASVTATPENPDDLLCDTGATNHVTSHTSFFINLRPANVKLRVASQDRISVDGIGDAIIPTQYGNLHLKDVLLVPWVCGT
VVSVGYFDRWDGSVGFVNGSFVFSQNNVSFPTYIKNYRWFIPSSSSNASLNSCDPSLSALNTSSLWHARLGHVAVRFFNR
TIATQCVSGIPIKKLPLQKSKCHSCSLAKSTHDPVKSPSREVVDEPGDLVAIDLVGPFPAALDGSTYGLVIHDVFSRLTS
VIGLKTKAEAGKAVTDWILEFNKRTSISVKAIRSDNAGEFTSNKFNKFLKDNNIRHELSIPYEHHQNGSVERTNRTLLDM
ARTFIIHAKLPNSLWFLAMKQACFIFNRVVHTGVDKSPYEIALKKRPSLDMVRVFGCRAYLHDINYKKQFIPRSTALIHV
GISDESNGWLLWDPVSKKLEKGASVIFHEDDLPSQMTNSGGLNAILNSIRVDSLGDFRQIQELELQDACLDSAVSVSPFS
SDAPNTYQQAVNSTLRAQWSAAIDAEVGMMVQLRVWEEVPESECWDILTCRWVFALKRNQEGDITKFKARIVAQGFKQIH
GRNFDETFAPTPTFSSLRLLLAMASQNKWPIASFDVKSAFLHSDIDHEVYIRPPPGVSVKPGCVLKLRKALYGTRQAARC
WWLHLKSRLDTIGFVPNAEDQSTYVYRSGEDRAFLWIHVDDGLFTASSPQLLEVLKARLSTVLDLKWDGRLSSIVGLRVR
ETPGGFLIDQPMLVEKIVGLQQSSICTRTPIASTDLVSNFSDGSMDRDYLSRIGCLLYLAQGSRPDITFAVHFLARFSMK
PDSSHWAALEHLISYIRYSKGLALPIVATEDFEDGIKTFVDANWGGEVSRSVHGFISTVWGAPVSWSSKRQTCVARSTCQ
AEYMALSFASKDACCLSSILKSFYSLPPPLILCDNKAAVQISSDCGTRKEHRHVDREFHTINELLYHKKVRLQWISTHHQ
LADILTKALGWRKVSEFLSLLGLRRQSNTMASKGGEVCAGCDEHAPPASVRLPPQPLLPDKD
>Copia-8_PGr#LTR/Copia 229-4275  [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MVNPAPSSTASASDSSKKEEKDVITIPKFNGENFSSWEPTMSAYLEYKKLWYICESDVLAQEDVSDTVKSNALEVWLIFS
SKINSEIFNSMKSSCGRDPYKIWIKLRENYAAANIYGIYRVWVNYGRITYEEDLLKYIIKIKAALAEISTIGIDVMQELV
SVSIMEKITEKRPALMERLLADIDTLSNPYQLLARLRQIANHDQVRKIRELTTNHSQAQSQALATTTQQKKKPKIYCTGG
KHNPQSTHPHDRMLPSTPRDVRPFRPQKRARASNYATTTAPVNPEEDFAYYSDKEEAKKNAFILDSGASQHMFNSLDLFL
DSSPTRILIVTGSGATNIDMMATRKGKARLRLDNNTTITLKNSLYVPNLSTNLISFAQLIRSNATITTQEXGMIVTINNS
HSLRISTENNLFEVQGILPSRQALNTTTAEVCKFDTWHRRFGHASAPRIREVIQEKSDISIKNTCEACSKGKMIKSPFKG
HFSPTSNPLEVVHGDIVGPISPSTNGGCRYFLTLVDQHTGFIHITLLKEKSDATKSIMDFKTFFEKQTGHSIKKMITDGG
GEFCNNELGEILKSEGIQHNVAPPYTPQHNGIAERANRTIIEMTRCLMLQSNMAAEWWGEAAQTAVTITNCLPSLARSRS
TPRQLLLKQQPNPRFLKPFGCQAWILKPKANREGKFDSISWEGTLLGYTNDMSSYRIYRHEDRKVVFSRQVKFNENIFPT
CPALNKSLAVVGENLEIVPTFSADPILPFEGESTVTDADPQTEDPEETTPDHPTEPASDKRWAYVKDFQPKEPIVSTVDA
SNIIEGKRTRTTTCLVATSLDPKSHAMAMKSQEASKWREAELKEIXNMKKHDVWIERSRRTADSPIAXTWAYRKKLGPDN
QVVEYKARICAQGFRQTYGXNFELKYAPTGKAASLRLLLSYAVNQNLAIHQLDVRSAFLTCPLEDTVTLLPPQGYECPPN
TVFELKKAIYGLKQASLVWYKRLSCFLISIGFSATTSDPCVFHRPLCGVKPPTWIYAHVDDLVVISSDPAVFKSEIEQEF
DIKYLGRAAFLLGMNLERSADSLHIHQTQYVERKLLEFGLDKSPPASCPLNPKIHLKKASSTEIDELTKTGANYRSIVGA
LNYLSVLTRPDISYAVSVLSQHLEKPGIQHYRAAEQVFRYLAGTKQVGLVFKKRPSLSISAHVDADWGNCPDTRRSATGY
VITTNGQTLSWKASRQATVSLSSTEAEYKALSDLGRELAWISHLISELNLDYXPTNIPVGVDNQGAIDLARSEISQNGFR
TKHMDIRLHFVRELISTKLIKLHYIRTTSNSADFLTKPTGRLTIRRSLASIGVATPESSASRLKAQSNP
>Copia-9_BD#LTR/Copia 64-4610 via tfasty with OSCopia2, 4 frameshifts and 5 stopcodons. [Brachypodium distachyon]
MTGAPPARPPALPTTGAAPIAIAGNTSSSPSTTTTLxPSLLSPASIVDTMSDVTPFVPIVLDLPVHNFYHWRHLCLVHLG
RCSLRHHVEGDDAPALADFLWVKNDYAILQWIYRGISTELFHLVVRDGVTARDVWTALRDLFQDNRDARISQLHTELRTL
AQGDNSASAYCQRVKAIGDELQELDSRVDDRGLVHALLNGLNERYAQVATLIPLLRLFPTFAEARSMLQLEDLNLARKAR
NPQAFHTNYGPSCAPGGGSSSGYGSANQQPRSSTASSSTRPPGVSPNYKGKNPIPGYQPQRTRSLTLRAPTPQAAPPRAS
CTNSSTSSASDAIWTGVVQAWPFPWMTPGAPWMPGMRPAHGAPGLLGSRPPPxAYTSFAPVYQASAPPPAPIFVPAPPAA
SSTPAAPAATTPTPPYxNHAVPTAAAATPSPPQWNQAAFLTAINDLTVQAEGSNWIFDSGASAHMSADPGILSTCRFSPS
LPSITIGNGSTVPFYCLHNASLPSSRNPLVLRDILVAPSLIKNLISVRKFTTDNNVSMEFDPFGLSVKDLLTRAVIAQFN
SMSDLYSLRGTPTLVSPAAMIASVDLWHRRLGHPNSAIVSSLLKEFSIPCTSSPHNPSLCEACQLGKHVRLPFPSSTTIT
CTPFELLHCDIRTSPIPSVSGFKFYLVVLDDFTHYVWTFPLCSKADIHSLFLNFHTYVKTHFSLPIKYIQCDNGCEFANT
RNRDFFLSHGILPCFSCPYTSPQNGKAERSLRTINDIIRTLLIQASMPAYYWAEDLRTATYLLNIRPTKSAPFYTPFQSL
LFSSPNYAELRVFGCLCFSNLTATTANKLEPRSTPCVFLGYSDEHKGYRCLDPTTSRVILSRHVTFDETYFPFSHHLTSN
PAPSARNHSPPPYFMSQPAAAPAAAETQSSPAAAPAAAENQPSPAAAPTAADSQPSPTTGASPAPITPSPTRSTASPSNT
TNTSASHPTVPPPHAIPVTPPQNSHPMQTRAKRGFSLPQRRWNLTASTISPLPTTYKSALLDSNWKHAMRDEFNALLANN
TWDLVPKPPGANVVSRKWVFHHKFHSDGSLARNKARWVCHGFSQQQGIDFDETFSPVVKPSTIRTVLSIATSSAWLIHQL
DVKNAFLHGSLNETVYCQQPQGFVHSTxPNHVCLLRKSLYGLKQAPRAWFTRFSSFIQTIGFTPSQSDTSLFIFHSSTQT
AYLLLYVDDIILTASSDSFLQSIISSLRAEFSMTDLGGLHHFFGIAVTRSSSGLFLSQRQYAADLLAKAGMQDCHPCRTP
AEAGSKLSADGEPISDPNFYHSLTGALQYLTLTRPDLAYSVQQACLYMHDPRVPHLNHVKRILRYVRLGLHLNSSSPTTL
AAYSDVDWACCPDTRRSTSGYCVYLGDHLISWCSKRQVSVSRSSAEAEYRAVAHVWLRQLLQELHRPIAHATIVYCDNVS
AVYLSSNPVQHRRTKHIEIDIHFVREKVALGEVRVLHVPTSExFADIFTKGLSTASFTNLRSSLSVVEPDAAIAG
>Copia-9_AA#LTR/Copia 118-4031 via tfasty with Copia-97_AA, 87.0% SW:4609, 1 frameshift. [Aedes aegypti]
MADTKVSIEKLNDQNYAIWKFKMRLLLTREKVLSVVTDPKPENADATWISNDEKAQALVQVPMEDTQLIHVVQKTTAKEM
WDALRNYHERASLSSKIHVVRKLVSTWMPEGGNMAEHLKTMTELQLRLTALGEELKDHWFVALMLSSLPSSYDGLITALE
SRPDDDLTVDFVKGKLLDEGRRRMEKSPEREKVFVTEPARKNKPNSVKQKVAKDKVCHYCKKEGHFRRDCRKLAQDRQEK
ERVSVAAECKKEFEMCLAAGSVGEKGVWYLDSGATSHMTNDASFLGKLESREASICLADGNIVKSTGAGSGQISCVNGEG
ARVKVNLGNVFHVPSLAGNLLSVGKIADLGLTVLFEKSGCKVLKGSEVVLVGQRNGGLYHLKQFPDKALYTEVKHSDKCE
HLWHRRLGHRDSKAVMRIVREKLGHGLEINQCNVSSVCGPCFEGKMSRDSFPKASKSRASEVGELVHSDLGGPMEVATPR
GNRYYIVLVDDYSRYSVVYLLQHKSDAESKIREYCNMIKNQFGRFPKCIRSDGGGEFSGSALRKFFADNGIVQQMSAPYS
PQQNGVAERKNRYLKEMMRCMLVESGLEKKFWGEAINTANYLQNRCPSSSIVSTPYELWSKKKPSYSHLKIFGSEAYVHV
PKEKRKTLDAKSVKLVFVGYEEGRKAYRFLDVQTGHITISRDAKFLELCSVKEAVRAEPAATGEVFEVPLSSPPTEPDCE
SDLEEENDDFSDVNSVGSEVDLNSSLYGSADDNLSADEFPRRSQRSTKGIPPSRLIEEIFVAGTVAGEVEPKNLKEALAC
KQKQEWKSAMLDELKSHSENGTWDLVDLPKGRKPVGCRWVFKLKRNAAGQVVKHKARLVAQGFSQKFGEDYDEVFAPVTT
HSTFRLLLAMASRKRMTLKHFDVKTAYLHGQLDEGLYMAQPPGHVVKGKEHMVCRLRRSIYGLKQSARCWNKRLDTVLKS
MGFKQSSTDSCLYTKKVNGKIVYLLVYVDDILVGCVDDSEIEVVYKQLKKYFDMTDLGDLSYFLGMEVQKEPNGYSLSLK
GYIKSVVEKFGLRDAKGAKTPMDAGYVKEEDKSCALSDGKKYRSLVGALLYIAVCARPDIAVSASILGRKVSAPTEADWV
AAKRVVRYLKATSDWRLQYSNSGGDLVGFSDADWAGDIRSRKSTTGFVYLYAGGAISWCSRKQSSVTLSSMESEYVALSE
ASQELVWLLKLLDDLGEPYDVPVKVMEDNQSCITFASSERTTRRSKHIETRENYVRELCHDGILKLQYCPTEDMVADVLT
KPLGTIKQRKFSEMMGLSASGGNKG
>Copia-11_PR#LTR/Copia 63-4997 53.6% sim to Copia-134_AA, SW:1137, [Phytophthora ramorum]
MTEPLKYTSDGVPKNWNGKDWQQYKWAMMIVFRKKKLVDVVDGAVTRDMLTSAETEADFDDKQLTIMQLIGMSLPADIFH
QVRDKTTGTDMWKALCVIYESRANKTTMAHRAESIRHELEMLKLAPGGDVNKHLSKMFNLRTELLSLNYQFDDITMVELM
LNSLPHQYEFESLKSGVRYNSADNFITPERTRELIRVADSRQKAYQVARGGQRGGPKIGGNGGESSKPKTEEGQQYGNKS
KDSKKKRVKKCYICDSTEHLRNNCPQKAKGSEGGGANAAEQKRKPRANMTTRREDSELGGSSSEDEETNEATSLLDMLLL
DAGTPDDVQNDEHGSASDVGNLVDGQYDGISDGESDHEEAGSNSRSSWWYFDTAANVHVTGNPLDYVTFTPDSHESQHVQ
GVTPALASRIAGVGTVELVTNVDGERAVVYLNDVFFVPGATHGLLSIGLAAEQGFDFDYYPQVQSFRVREDGRTVIVATP
HDATWGFQVTHPMSDDLVAPPDSALCNFTAAEGVASMKVWHDRLGHICPQYLKVMVDKDLVRGMMLRRRELGACDACHIG
KQKQRAHRKKLNRNITKPNQVVYADLLIPSKDNGTKYEAVLVIMDGYSRFVTIHLLKSKSSTVVNQHMKEYVLWAERQAG
RHKIERVLTRKVNLQYRVHQVQTDKGGEFVNTNIESWYKAHGIEHILVGPKSSQLNLCERTHQSLVEMTKATMHDAGFPR
SLWPDALRNAVYIKNRTYNKGTQGIPYEMIFAVKPDLHHIRKFGALAYVHVPVNPGRKKHHDNARLGFVLGYAEDVVGCK
VYFPENRTAKFVSDLRVTEDVVYRDRHGVSLEDEDLESLHFTRAAETPAPSDSDSTLDAPTMTSCNDDDTVAATMANETM
ASMTMDLEGSEACAAPNAAPTRSAQRHVELSEMRATTCQASTADLGGITAALPSVETMVRTTVDVSSAQTEAQQVSVCHQ
SEELAVTDVQDENQSLPTGRETSMEMKTDQPLVLQYGDDNETGCSASERCDGSESVVSVCGTAADDAELIVENEEPADED
DDESVVASVCGEIMGKRRRDETPSEEIRVELSAAKQEPKRNRTGLREYHKRKRPAYFDDYVMNVAQRTTRILDKNGRPIR
GSDVRIPKNRRAALRSKYCNFFCEAELEEMAALKARHVLEEIIYEDVPEGAKPIKTKWVYDTKTDSLGYVVRFKARLVAL
GNYQRPGIDFHDTFSPVARMSSFRLMVGLAAELDLKLFGGDINTAYLNADLGIKQYVSSIEGFPCEVDGHLYVVKKALYG
LRQSGREWNTELNQWMMDHGYQRSMTEPCLYFRLEGDMTMLVLVYVDDILVATNAEGEKNKLFEDLDKEYGIKDQGLLKH
YLGVEVEQTDECVVIRQRKYAHEIVEKFGYGGAHPVGNPMEVNARFEPLGENEDSDTSFPYREAIGMLMYLATSTRPDLA
FALSQLCRFVAKPSHKHVGALKRVLRYLAGTENYGITYTRQTAESKSMVLEGYCDSDWGNDPETRKSTTGLVFTLAGGAV
SWMSRRQTIVALSTAEAEYVAACEAAMEAVSESNILQEILPQHDVKLRIGIDNQAAHVMATNPTYSRRTRHIELRWHYVR
EQVEKGVIELHKVCGDVNPADTFTKPLDKLRLKRMLALAGIGGVD
>Copia-17_SB#LTR/Copia 44-4330 [Sorghum bicolor]
MSTSEATAAVLPSSFGHPVTEKLTRSNYGLWKLQVLPAIRGARLVGYINGTTKDPEKEIKGTDGKKIPNPAYETWMALDQ
QVFSYLVASLTREVLKQVSTCNTSEELWSTLEALYTSQTRARSVNIRIALTTTKKGSIPVEEYIGKMKSLADEMASVGKP
IDDEELVSYICAGLDIDFNPVVTSVLARTEPISVTELSAQLQSFEQRMDLLGGNGNGNSSSSSANIAARGRGGGRGGNRG
RGNRGRGSNSGGRGRGNYNSGKAKIRCQLCKKEGHSVVDCWRRYEEDFVPPEDKSANAVSNGNYGVDSNWYTDTGATNHI
TGELDKLVIRDRYTGGEQVHTASGSGMNIAHVGRVICHTPERNLMLNNVLHVPKATKNLVSVHKLASDNSAYFEFHPNSF
CIKDKATKTILLEGRCRGGLYPLPAGALKNKQALSASPSGAHPSVERWHHRLGHPSFQVVQQVVKRNKLPCSFESSISSV
CDSCQMAKSHQLPYSKSSSQSSFPLQLIFSDVWGPACDSFGRNKYYVSFIDDYSKFTWIYLLKHKSEVFQRFHEFQQLVE
RQFDRKILSIQSDWGGEYEKLNSFFSKVGITHLVSCPHAHQQNGAAERKHRHIVEVGLSLLAQSSMPLKYWDQAFLSAVY
LINRTPSRVIESQTPLERLFKMEADYTSLRVYGCACWPNLRPYNAHKLSFRSKQCAFLGYSNLHKGFKCLDIATGRIYIS
RDVVFDENVFPFSRLNRNAGARFHSEHNLLDSHSSNSSTNSGDDDIRSDCANILPCAATNPFVRLQANPTQFDGENGVFP
GVPPGAEHEDDPPSSSVRGPGESALDQAPAGVVTQQRGETTTTPHGSAVAGAATEFDLAGSAMPSAPDPAPASTAAPVEP
PAPVALQQLPRTRLQHGIRKPKQYTDGTVRYGLLVTNDEPRNLEDALGNKDWRDAMDAEFLALHKNKTWHLVPPKQGKNI
IDCKWVYKVKRKADGSIDRHKARLVAKGFKQRYGIDYEDTFSPVVKAATIRLILSIAVSNGWSLRQLDVQNAFLHGVLEE
EVYMKQPPGYQDKLHPNYVCKLDKALYGLKQAPRAWYHRLSMKLQALGFKPSKGDTSLFYFKKGNLVMYILVYVDDIIVA
SSSPEGTRALLQDLKSEFALKDLGELHYFLGIEVSNVKDGIILSQGKYAGDLLKRTGMQFCKPIGTPMAVSEKLSLHEGT
PLSMTDATRYRSVVGALQYLTLTRPDISFAVNKVCQYLHSPTTAHWTAVKRILRYIRSSMSLGLRITKSSSQLVSGFTDA
DWAGCVDDRRSTGGFAIFFGSNLVSWSARKQATVSRSSTESEYKAMANATAEIMWVQSLLKELGVRDSPMARLWCDNLGA
TYLSVNPVFHARTKHIEIDYHFVRERVAQKLLDVKLIGTNDQVADGFTKPLTAYKLQELKRNLNLDVPG
>Copia-14_MLP#LTR/Copia 193-4692 65.5% sim to Copia3_XT, SW:1550, [Melampsora larici-populina]
MSSSPIDSNFEDTSITDTESNSSDKSHRTARQDPDPESTTSENSREIPPTIMSGEEPVAVFGNALQRYGQQLTNALSKFK
VTEDLEDGNYPTWQRSIFDNLETLELHHYITVKDFVDKELSSDKVLKTKKVIVSHILNRLDKANHCQAINRLTNPEDPNS
IIHDPFILWTFLKERHFLINAQRLAAITKSLSTITISRGDTLPGYLDKFENLFVEFTRYGGKMDDTQSAIRLIDSIDRLP
ESTVEFIHSTISPLTRREVTQYLRAYDTRHNFSTEATREARNVEQSASATSRGRRIECTESVCKGPHPAEKCWSKPSNFP
ERDDFLARRRANRSGWNQRSAANSNSRPSNNPVRGMRRVNASPASASSITQSLGMMSLHTSFEVISLDTPPAANMSTSNS
SDTVWALHDTGATNHMFNSQSLFVPDSLKPVDDPNRRVKLAGGDATLAVEGVGKVHLKAGDGSIFELTECLLVPELSKNL
IAGGILKKKGVRETFDPTDPNCFALVKNGLALFNGIILENGLMNVVIESVSRPASNLNSSSEASAHLCSSILHRRLGHIS
QPYLDKMVKHGSLDGLVMKTEDITECDICPLSKNTKLPFNHSRPRALRFLENIHVDISGINRVKGLRNESYYILFCDDYS
SYRHIFSLVDRSKTEVFKVFKSYIAVAERQTGCRVKQFTLDRGGEFLNDLLGPELDSLGITLHLTAGHTPEQNGVSERGN
RTVITKARCMMLESGVPQSFWYLACSMAVFLTNRSITKAVSDFRTPFEVWHFRKPSINHLKVFGCQAYRLIRKELRQTKY
TPVASPGILVGYEQDNFNFHIYDIKDRKIYITPHVTFNENLFPFNSEKTSVNSGNDLVKSFYFDDDEMLMESVIETNHEN
GPAGSEEIEDSQTNLNPILTDPPDVKTTESSSNDTSPQIKQTNVPVEIRRSGRNQTSVNYKGMCNAASYESCEFQSYFSC
LPQDCYAVSSATPDPKSYKKAMLAGDSPNWRKACDKEMESLLKKGVWSLVDRPKSKCIIRGMWIFRTKINSDGTKKFKAR
FVALGNTQVEGLDYGETFAPTGKPTSFRLLVAMASINGWEIHQMDAVTAFLNGILEEEIYIEQPEGYVIVGYEGKVLKLN
KSLYGLKQSPKIWQDDVQAYLVSIGFIQCQIDHCIYIRSDESLQKFTAVYVHVDDMAITGNDALQFKQEISSKWEMEDLG
LAQIVVGIEIKRNNSHSYSLTQTRFAETVLERFNMSEVKSASTPLTPNLKLYRSTDEEVESFALLKLNYRSAVGSLMYLS
QCTRPDLAYAVGVLSQHLDRPSISHWNAALQVFRYLKGTVHLGITYNGKISTRVSGQKSFDLPVSHCDADWAGDKSTRRS
TTGYIFTLAGGALSWRSRLQPTVALSSTEAEYRAVTEAGQELLWLRRMMEAFGCHDAQPTILQSDNLGAIHLTSKSTFHG
RTKHIEIHHHWIREVVKNGDIKLKHCSTGEMVADLLTKALGKQQFIKLRSKLGLIQNEPQ
>Copia-18_DPu#LTR/Copia 333-4286 via tfasty with Copia-8_DPu, 2 frameshifts and 2 stopcodons. [Daphnia pulex]
RDCYARLLIFNSTDDVRQKALFNCRTSHEMWGRLNTQYLQRAADNKHLLHREFLNLRRLSSVKLxRNVxFQPVLLIYSYV
DGDDIMNHVTALESMAAQLNDLGVSVTDHDIITKIVCSLPTRFDNLVSSWDGMQDQEKTLDALRARLVSEERKFTLRKAQ
AGGSSIETATASPNTAFFGQGMGNHGRSRPDIKYGRGGGSFRGSQRQSSAQGRSKDQVARDNAFCSYCHKTRHYAFECRK
RIEDEGASQGNNKKANLADSSGGKESDRDFSFVSTECLRASEPATFYLDSGCTQHMSDQRSFFTNFRPIAELERPIDGIG
GAKLYARGIGDIAVSRWANGIKIDGWLRDVLYVPQLTVNLVSIGCITENGYMVVFSKDSAKIMQKDDTVMEGSRIGKTLY
RLDISAKSPPITSLIASSSSATLNVWHERLAHVSHDIVKKMATSNHVTGMDVEPVKEDRNLYCNGCNLGKMHKLPFSTSI
RITTRVGELIHTDLVGPMHISSPNGAKYYVVFKDDYSRYKVVYFLKLKSECPDLFKLFSKKIFCETGKRIATLRSDNGGE
FMSHEFQSWLTEERIKQEMSAPHTPEQNGKAERDHRTTVEAARSQIHGKNLPLTLWAEAVNHSVYTLNRTLTKQRQVTPY
EMWHGTKPDISHLRIFGSVAYALIADAERRILDPKAIKGLYVGESEQQKASRIFIKETGRTIICRHVKIYETEIVDTTTS
NKRDEESGADMSKSENASTTSPPENITQLTKDTTVSIPQPIRQSTRQRIPKKLWPVESYAALMSSDETMTNHPMFIFYEP
KSFKEAMTSTERDLWKKAADEEIRSHQENNTWTVMPLPPNRVSIPSGWNFKIKTDKDGQPKRRKARFFAKGYRQIKGIDF
QESFAPVVRYDSLRVLMAIAAMQDLELVQLDVATAFLNGDIDEEIYITQPEGYIIPGRETEVCKLNKSLYGIRQASRIWN
LKLNSVLIAAGLRQSNADPCVYFRTDNEETVIVAVWVDDGIIAGNRMATIDKIVNTLKTSFKMTHGPAEHFVGLVIQRDR
ANKQIVLSAPQYVEKILAKFQMNTCHPISTPTEKGTPRLYALPPSPNDSEIKASFPYREAVGSIMYAAITIRPDISFIAG
QLAQHCENPSPVHWKGAKRVLRYLAGTRDHGICFGGKRTNPTGLYGYSDADYAGDPNSRRSTSGFLFTLNGGPITWSSRR
QPIVALSTMEAEYIAASDACREATWIRLILSELGAHQNNPTTIWCDNESAISLAKNPESHKRSKHIDVRYHHIREQIKKG
VVNLSYVNTKNQLADILTKGLDLQSQEKLMKEIGIVKP
>Copia-19_MLP#LTR/Copia 64-4233 via tfasty with Copia-75_MLP, 58.8% SW:1336, 2 stopcodons. [Melampsora larici-populina]
NKSIDNMSQPTFSTKAAEKEDDNESSSGSDNHHSSKVKITKLTRKNWHEWQIRFDNILVSKGYDDLLDETWVKNNLNKPL
FKRKNAWAINKLFETVSIELRAILLKNSKSFFNAYTALSKSCGVSSILMIGMKVQHWMSIRYIPGGSIQEHCDQFSGNYS
SLTASLAATTPAVLTISTELAAIFFLLSFNDDETLTPLIQNCWDLSPFNFETCYDKMIMEHNRRDSQEQDVINFSKVKGK
NNEKPSSSQNKPNSSTFNPKSIVMTKKPFVKNFETIDEKVARLVAQHLSKKSEANLIQQNSNSDKEQVDHVQDNLSDDIK
NSGFMLTDSINYLGTEKFPLVYDSGATKSTVNNLDLLIDPAPISKSLNTYGGSVAISHVGKLNFGGTIIHPVYYSENGPR
NLISTTQLEDHGMNIIHSHRKVQVxLGDKIIFRFFxEGDLYVSKNTSSLNMTQEVNFTEAKDWHIILGHPSDVYLRKFLQ
LNDIKSSAVQDSTGCLICLRCKLKNSPHSNPIPSASKPFEKIHSDLLQITPVTGQGIKYVLVLIDDFSRFNRIYLLKKKS
EAPNRILHYIAEIKSKTGSNPAYFHSDRGGEFTSTFLVNEFAKLGITIEQGPANSPKTNGLSERFNQTLLVKMRCILAQS
SVPINFWDEAARYASQLINILPSKPLKWTSPVSILSDLNLSIEPLRKLTKLIPFGLKVFVRQQQESKIQPPSNSMLFLGY
EPFSDAGRFLNLKNRHIVISRDYSASPLNFPYTSESVIKKPVETLPNRKVTYKSENVVVNLKTPKKITATSSIEGTPAIP
SSRPETPPLPPTQPVAPAAPKKSHHVHIPYSDKAPKDISSKIDSSNILKTTRRKANSNNGDEEEELEVNLAIDVSLRKAL
MNPEEAPKWKEAMQSEFNSLVSKETGTLVPPPNHDKVIGGMWRLKKKLNEFGEVSRYKARWVCLGNNQEEGIHYFRTYAS
VARNESFKLLLVMVVQGHYYAYQFDIETAFLEGLIDAPIYLSQVSGFEEIGREAFVWLLYKSLYGTKQALRRWKAKLVEV
LLMAGMVPSQGDESLFVNQSKTMFLHIHIDDGFVISKDKNVIMKLFQDLKKEFTMKIKERPTQHLGYSLDWKTGGSILLH
QTDFAKKTLDRFDMTECNPIKTPAPMNIHALVASKGDPVKVLLCQQALGMLNHLSLHTRPDLTFTVNLLTQFTTNPNTFH
WSAICHLFRYLKGTISLGLHYTKSQSPLRPELCGWADTDYATSFVTKKSTSGFTLTLYNNPICWTTKKQSVVAQSTTEAE
YISSNKCAKQLRWMSILMTSLNLKISKPPLLINDNTGAVTISQEAQLNPNSKHIEVRYQYLRDLVMKNLMSIEQVPSAEM
IADVLTKPLGTVKHQVAMNQLKMACCDLGG
>Copia-19_BRa#LTR/Copia 23-4168 via tfasty with Copia-9_BRa, 88.7% SW:5034, 1 stopcodon. [Brassica rapa]
MGDIVTTKVKEGGGPSSLKCPMLTTTNYTVWAIRIKVLLKVHKVWDVVESESDHGEKNDMATALIFQSIPETLILQVGDL
DTAKKVWDAIKSRHMGADRVREARLQTLMAEFDRLRMKDTDTIDDFVGKISEISSKSCALGETIEETKLVKKFLSSLPRK
KYIHIVASLEQVLDLKITSFEDIIGRLKTYEERVAEEEETQEQSKLMFANTEGQNQSNYSNRDYNNSRGRGRGGRYYNRG
RGRGRYNDRYNDRYNDRYYENIDLSKITCYRCDKKGHYASSCPDRLLKLQETAESVANSETQEAEELMVNEVVYLNEKNV
NPQDFETSSDRDNIWYLDNGASNHMTGSRNFFKSIDESITGKVRFGDDSRIDIKGKGSIIFCGKDGGKKIINDVYFIPAL
KSNIISLGQATESGCEVLMRENYLILQDKEGRVITKAKRSKNRLYKVLIDIVDEKCLQLETMSNTALWHARLGHIARDSM
KTMASKEMVVGLPKLIAEKETCFTCLRGKQARSSFAKATTYRAEKALELIHGDLCGPITPPTPSKKRYIFVLIDDHFRYM
WSILMTEKSEAFDKFKIFKAMVEKETGFTIKMLRTDRGGEFTSNVFNEFCQNHGIARHLTAPYSPQQNGVVERRNRTLLG
MTRSLLKHTNLPNHLWGEAVRHATYLINRAATRTLILKTPYEAFKNRRPNIGHIRVFGCIAYAKVDTPHVRKLDDKSRTL
VHLGTEPGSKAYRLYDPISWKVVVSRDVVFDENKSWNWTSIDKETxTFIIDFGEFGNNGLRQLEDTRSPGVAVSEIVEKE
AETGETETEERSTEHGIHQHDDDGDDHPPLRRSTRETKKPAYLDDYILVAEEEGERLLLAINDEPWNYDEAKEKKVWRDA
CEEEIRSIVKNKTWDLVDLPVGAKAIGLKWIFKVKRNSDGSINKYKARLVAKGYIQRHGIDFDEVFAPVARIETVRLILA
LAASKGWEVHHLDVKTAFLHGDLKEEVYVLQPEGYETKGKEGKVYRLKKALYGLRQAPRAWNEKLNRVLGDLGFVKCSKE
AALYHKRDKDQQLLVAVYVDDILVTGTGLSLIQGFKEGMSSRFEMSDLGKLSYYLGIEVDQRVGRITLKQERYARKILEE
TGMKDCNLVHVPMDISLKLSKSVEEEAVDEQEYRRSIGCLRYLLHSRRDLSYSVGVLSRYMHEPRRSHSAAVKQILRYLQ
GTLTHGLTFQREDKIGRLIGFSDSSHNVDEDDGRSTTGHVFYLSNSPITWCSCKQDTVALSSCEAEFMAATKAAKQVIWL
QELLGEISNITSEKMVIYIDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVDNGLIEVQHVPGNEQRADILTKALGKIRF
KEMRSLIGVEDLGKTDFKLKEE
>Copia-14_Mad#LTR/Copia 64-4461 via tfasty with SHACOP6_MT, 2 frameshifts and 1 stopcodon. [Malus x domestica]
MGDREKKSTSAGMTSHSKWENPNHPLYLHHSNQPGAVLVPQPLVEDNYSTWVQSMTMALTVKNKLRLVDGTVEKPTEDKH
EELQQWNRCNNLVKTxLLGSMSKEISSSVIHCKDARQMWLDLQERFSHVNIVQLFHIENEIHGCVQGNMTVSSYFTKLKG
LWDERDVLCSIPACSCDTKKEIISYVETQKTMKFLMGLNDSYSTVRSNTLLLEPLPTVNKAYSLVLRHERQAEVSTGKHL
SQPEAAVFAVKNGGRENEQEDGNLRCGKCNKTNHTTKHCRAHLKCTFCGWKGHSFEYCRKRKAAAEPEQNRPSSAKGNHV
AVHDKKDGMPNFPFSQEDCKQILAMLNKNKSSFANHVGNSSNNEKLSGKAFSCMHNGITTVWILDSGATDHIICSPNSLT
SSRPVSNHTVELPTGSLATVTHIGQVVFSPTLVLDHVLCVPFFTLNLISISKLAHDSFYITIFLRQICVIQDLRSGKMIG
IGLKREGLYYLDPPQKRTCNVIQASNPCLWHQRLGHPSQTVSMLFPFLNNKPCDSNKCFICPLAKQTRAPFSLSSISTKS
CFELIHIDIWGAYHVPSLSGARYFLTIVDDYTRSTWIYLMKHKSDTRDLLVQFIHLVETQFTTKVKMIRSDNGPEFRLDN
FYAQNGIVHQTSCVNTPQQNGVAERKHRHLLNVARALLFQAKMPQRFWGDAILAAAYLINRTPTPVLKGKTPYEKLFNKI
PHYSHLRVFGCLCFASTHPLKPSKFDPRARRCVFLGYPYGQKGYRLLDLQLNKVFVSRDVIFFEDQFPLDTSDAPDNSHA
LANSPTTSHPLFHFDMASFPDTPPMPSAPSDPPSHALSSSDPTPQALSSPDSPTNPAPSTTNLLSDPTSPDPLPSPIPNA
PPTPPPRRGTRPTKPSTFLQDFHIEVPLPSRPDPMSSLNVVQSSSGTSHPLSHYLTYDRLSPHHKAYTATLTLLKEPTSF
SQAVRDPHWRDAMQREIAALQANHTWTLVPLPLHKRPIGCKWVYKIKLKPDGTIERYKARLVAKGYSQIEGVDYQETFAP
VAKLTTVRVLLSVAAVQGWHLHQLDVNNAFLHGDLDEDVYMNLPPGFGRKGENRVCKLNKSLYGLKQASRQWFIKLSNAL
MAAGFHQSRSDYSLFVRSHHGNFVALLVYVDDVILAGNNLHEIEETKQFLSQRFKLKDLGQLKYFLGIEVARSKRGITLC
QRKYALEILDDAGFLGVKPSRFPMDQNLSLTQMEGKELKDPSSYRRLVGRLIYLTITRPDLAYAVHILSQFMEKPRHPHL
EAAHKVLKYIKQAPGQGIFLPSTGSLELQAFCDADWARCRDTRRSITGYCILLGQAPISWKTKKQISRSSAEAEYRSMAT
TCCEIIWLKNILKDLKVSDSKPAKLFCDNQAALHIASNPVFHERTKHIEIDCHLVREKIQEGMIRTAYVRTSDQPADIFT
KPLSSTQFEGLLSKLGVINIHSNLRG
>Copia-12_MLP#LTR/Copia 430-4254 61.8% sim to Copia-2_SL, SW:1424, [Melampsora larici-populina]
MSGTTPSSPPLTYESDKSKICATLARYVMPANLVILRKHRGDPRGMWKALKEAHEGNTAGSCMYWLEKLVTFKMETNNVN
TELDRILSISERLNSIVTTQRPLTVDEILSMVVCLMLPASFKPTVTPLLQRDEITSTQLITAIREEVTITSISQSTVDSS
ISIESVNKASESKPETTKSKTCNYCRERGHLISECPKKLTRSQKYNPALDEMKQEIEKLKAQLEKSNKAEKASVANSIPP
RGDSDENVPSVVDDDSDFSYAIQNISEKVPSSGTIVVDSGASSHMLPSSDFVYESKSNHTTVQLADGSSITSTSKGCFNP
GFSDGSLHQSLIIPKLKEPLMSVSKLSDAGIVSVFNNKECVFYQSPTITGNIVGRAPRRGGLYYKSYVRTSNNSLEQCKN
AKTDLLYWHRRFNHPNIQTLKRKLKLAGIEVPNSSIKSCSECRICIQGKMRRRNFHSCSEYKSKKPFSVIHSDVSEYSTV
GRDGCKFFVFFLDDYSKFARSFPIRHKSDTFNCFKKFINEVESIPGVKVHELRSDNGGEYTSNKFASFCSDRGIQQTMGP
AHCPQLNGVSERWNRTIKEKIRCSLIESNFPVTFWPYALSYCTESYNHLPTCTNEKFTSPVTLSGFPERKPEDFHSFGCE
VWYHVPDTKSKLESRARQGVFVAYLKNNRGYYIFDVSNQNLIKSTSAKFFESNFPGISILSSSPPLNSQPQTLPWPELES
ERPHPVSLPKIQPNISNRLPIRQLPTRTRRPPDRYGEYGNVACEPDPKSYKQAKKSLNWEAWRKAAVSEFESLVGKETWR
LVPRPACRRIIRCKWVFKTKRNVDKSVDKLKARLVALGFSQIKGIDFHEVFSPTSRQESLRVLITIMAQKGWKARSVDIK
TAFLNGDLDEHIYMEQPEGFIDPDRPEWVCQILRSLYGLKQSPRAWNKTLHEFLISLGLVQSSHDPSLYLRKNNDQLSGL
IVVHVDDLSITGTDEFISSTCKSLHGRFEISKDEPLSHFLSLQINRESQTTASISQSHYIEDLAEKFLPSDFKPCKTPTT
DAFKLLVPSTEDEEFQQPYSSLIGGLLWVAQCSRPDISFPVNRLSQFLQKPNHSHWESALRILAYLNSTKDKKLLLGGKT
LDAVAYSDADWAEDRHKRKSTTGYVFKLGIGAISWRSRKQKTTFLSSTEAEYMAMSDLCREARWLFYMLGELGVIKDKAI
TVCCDNEGAEALAKNPSHHSRTKHIHTRYHFVRGCVKDGVVNLCHVLSADMCADMFTKALPKVLLEKHRNALNII
>Copia-11_SI#LTR/Copia 93-3983 via tfasty with Copia-24_SI, 69.1% SW:2155, 1 stopcodon. [Solenopsis invicta]
MTTEDLRLTPLTKDSYQRWKYEVRSCLKSIGATGHVDGMVKYPTGSGSEKDAETWIKMDGKAQRVLTCALSDDDHAAIRD
CDTSRDVWLKIQSIYETKSNENKYLLNQEFHRMRFNEDQSVTNYCAQLAVICQKLKAAGEELSDSGLIAKLVNDLPSRFD
NFRSNYYIQAASGTTLTFDKLKEQLMLIEANVSSAAANTDTGDALITQAKERNSKAKREQRACFHCKKIGHVKRDCRKxK
SEQAKEQGKSTASVASGQAFVTASGYARNMQIQDSWLADSRATHHMTHRREWMYDFESITKGQFGVTVGNDQIIYALGRG
SIDIIATIDGQKVQHKLCNVLFVPDIGKNLLSVGAAADNGVEARLSKTGIKLMSKNGIIAYGTRVAHSLYSMDFETVVNT
SANVASVAANEQVWHERYGHVNYKAIRRMVKNPAVDGMQMIGKSNTDEETDQFCEACIFGKHSRKSFNDSKTRADELGAL
IHFDICGPMSIESFGGARFMALFVDDYTGMVFVYSMKSKADIVNCMKDVIAEANAVGHKIRRVRSDNAKEFIGKDMKKVL
REHSILQETSTVYCPEQNGRAERQNRTIVEMARTMIAGVELPKGLWGEAVHTAAYIRNLVPLERLDGKTPMELWTGKRPN
VSHLRIIGSKAYTLTNEKQSKFEKKSQELILVGYVPKQKAYRVWKRGTRKVVVSRDVIIVESKPKQQAAIVRTTEDNNDG
SLDNNLQSENKRQSDLSAQTISKIETDEAESIDDKEVNTDNIANRTRSKATLNIVTAASAFIADVHIPTTVEEAKLGSHK
EQWESAMKSEYDSLVQNNTWTLVELPKDKRSIKNKWIFKLKTKIDGSIDRFKARLVIKGCSQKAGVDYMETFSPVARHDS
IRALLSIAAVKDYEIYQLDVKTAFLYGDLNETIFMDQPESFNDGSGRVCKLNKSLYGLKQAPRQWNKKFDKLMQRFGLKS
SNADPCVYTSTDLCVALYVDDGLVIGHTKSKIDKLLEVIQSNFEITSSIATCYLGIEFMLDRKLRTIKLSQTAYTKSVLK
KFGMLECNGVTVPADPDVQLKRNLNDDGKTGEIADVPYRQLIGSLMYLSVGTRPDISYAVSILSKFLEAPSREHWTAAKR
ILKYLKSTPNLGIVYNGMTSKPNQLIAYSDADYASCLDTRKSTSGVILMLNDGPIIWSSRKQSIVATSTTDAEYVAAHDA
TKEVVWSRQLLKDIGVEQFEPTTLFCDNAAAQKLIENPIFHKRSKHVDIKFHYTRELVKQNQIKIQHVATQSQLADILTK
PLARGKFEINRNQLNLM
>Copia-12_SB#LTR/Copia 939-5756 via tfasty with Copia-7_SB, 2 frameshifts and 2 stopcodons. [Sorghum bicolor]
MSDIAKRDFEMLAVDGSNYLTWATDIEIRLDGMGLDHTIVQPEAGKDERTKQDKAKALHYLRHHLHPDLKCEYMTEKDPL
VLWQSLKDRFSQQLTIVLPRAQQDWINLRFQDFKSVAAYNSALHRIVTKLRLCGQKITDADMIEKTLSTFHPGNIVLQQQ
YRNSRYTKYSELSEVLSVAEQQNELLMNNHSARPTGSIAVPEAHANVAESSRNRKRGRGRGKWKGKKSTMFQGKGKGKPK
GRFDPKKERGDHSGEEQGDCYRCGAKGHWSRNCRTPKHLVDLYQQSKNKSKGQHESHFLTEPEARPEKHDDGVVGASGNV
RMDESEDNLLDDFDIFGDLQxSPKSHVSDGPHVLVWSCMLLKSICNVVDAPNYYNVSQELCNVVFMIIYVYVKFLFLLYG
INRICGDPMAEAELCLVDSGTTNTILRDTRYFQILTKKSxNIMTIAGSNAHIVGTGSATLVLPMGTQIFVKDALLYPDSK
RTLLSFKDVRANGFHVETEIEQGAEYLLITKFDGYQKRVVERFPSSPTGLYYTYIKPTDEYVAMKTIFRNTESFQIWHDR
LGHPGLGMMRRIINNSAGHDARGFPNPEDFVCTACAKGKLITRPSLLKIRDESPVFLQRIQGDICGPIQPLSGPFRYFMV
LIDASTRWSHVDLLSTRNHAFSKLIAQIIRLKASFPDNRIQSIRMDNAGEFRSKAFDDYCLALGIKVEHSVPHVHTQNGL
AESLIKRIKWIARPLLQNCKLPTSCWGHAVLHAAALIQLRPTAYHDTSPLQLVRGKEPSISHLRIFGCAVYVPIPPPQRT
AMGPHRKLGIYVGYVTPSIIKYLEPMTGDLHTARYADCVFDEDHFPALGGDRHPEECREIEWNASGMQSLDPRTSESELE
VQRIIHLQGLANELPDAFTDHKRVTRSHIPAVNAPERVQVPLKATNSIVSPNPRKRGRPPGAQDKVPRRRPQRRRSETLA
PLEESVEEARPEVENAPEVATQPEVEEVPEGHHPEDGNPNASRAHHRIGRSERPNSIVTGNHDEWEDNHEEIATNYVESG
ESYHRKTTIVDIYFASKIADSMDPDPEPKSMIECRKRSDWDKWKAAIEAELRSLCQREVFGPAVPTPPKVIPVCKWVFLR
KRNEHGEVVRYKARLVAQGFTQRPGIDYDETYSPVMSGITFRYLISMAANLNLKMQLMDVVTAYLYGSLDSEIYMRVPEG
LKIPGPNQNRNMFSVRLQRSLYGLKQSGRMWFNRLSNFLLQRGYINNDDCPCVFIKKSNDGFCIISVYVDDLNIIGTTRD
IEEAMAYLKAEFEMKDLGKTKFCLGLQLEHLPEGVFVHQSTYTKRVLEKFNMSKCHPLKTPMVVRSLEADKDPFRPKGDD
EEVLGPEVPYLSAIGALMYLANCTRPDIAFAVNLLARYSAAPTRRHWVGVKTILRYLQGTQDLGLWFPKNQAPTMVGYVD
AGYMSDPHNARSQTGFVFLCGGAAISWRSVKQTLVATSTNHSEIIALYEAARECVWLRRMINHIQKSCGLNVADTPTIIY
EDNAACVAQMHMGYVKSNLTKHIAPKFFYPHELQKSGEINILQARSCDDLADLFTKSLPASSFYKCIHGIGMRRLRELQG
LGGDQP
>Copia-14_DPu#LTR/Copia 437-4213 via tfasty with Copia-5_DPu, 2 frameshifts and 1 stopcodon. 115 AA internal deletion. [Daphnia pulex]
MPKHLYLLQIRDDPDNPELITNAAQIDAWILRDVTCRNYIFATLTKPMKEGLYSCDTAAAMWTKLDSQYRLRAAENLHLL
WQEFYDFSHQPGMLNFIMHALKNIELILILPLIEDDMTTHVRKISCIADKLRELGQPLQEMQLVTKALATLPEKFRIVRS
VWANVALDERTMDNLLQRLRSEENVLKSYERPDDSSQAFAARGHTRGRGRGNRRGSRIYHGVSNGFVNQHSSRDDVRCGY
CPHYGHKTQDCRKKKRDEAEQKANKDQALLSSSSSNPNSAFAFFVDSGATQHMSDQKILFEDFTQIQTGTWSIAGIGDTH
LQVLGKGHITVTVQVNNQSSIRVIKDVLYVPGLGTNLFSVAAATNSGLEARFSKDALSFNRGDELVLTGKRSGNTLYLLD
LKPHTASITSTRRIDSAFRAGLRASLLVWHQRLGHMNHQTILKMVSEELISGLHLTNEKIPKTLCAACELFHRQPLKIGR
TRATRIGELVHSDVEGPMPCPSIGQARxYALFTDDFSGWRVIYNPFEAWNGRKPDVSNIRIFGSRAFVRCPNVKKLEARC
LGALVGISNTQKAFRIYISSPPRIIVSHDVKIDETVMYKMPKDNTALKWIETTKETPTPIADSMDDTTTNLTTETDPVIN
DAVDLPISTFDLAPASILATQVPDHEEEQEVIVMEDNENNSEVPIEVDDPAESKIGIRRSSRLPCYSEKYLAYRQSLGLQ
AVPFEKSEQPKICPAEPSSYVEATTCPDADHWIPAIFDEYESLIKNSTWTVCELPPDRKPIKGKWVFTFKPGYKEVAPRF
KARFVAKGYSQIYGLDYVDTFSPVEKPYSLRTILAIAAAKDLEMIQLDIKTAFLNGDLQEEIYMKQPEGFVIPGKENQVC
RLLKSLYGLKKASRAWNQKFHAFIMKFGLTQSKADPCVSFQHQREGDIDEMLIILIIYVDDGIILSNRKQTLTDLLDYLK
MAFEIRSLPAHRFIGIDIIRDRPKRMVYIYQPEYVVKIAEKFNMSTCTPLTIPANPCCRLSPEMSPQNKEEEDEMKAVPY
REAVGSLMHIMVMTRPDIAYAVGQVAQYAQKPGKQHWRAVKRILAYLIKTKNFGLHFGNTSTSLIGFCDADYAGDLQTRR
STSGFVFLHLGGHVSWASRRQSCVALSTTEAEFVAAADATKEAVWFQQLLSELGIDAPSTTLYCDNQSAIALVNNPTFHQ
RTKHIDVRLFYIRELQESKKFNIVYLNTEQQIADILTKPLAVPRFEKLRDALGVILVPV
>Copia-13_CP#LTR/Copia 85-4424 via tfasty with Copia38-PTR, 88.2% SW:5423, 1 frameshift and 1 stopcodon. [Carica papaya]
MAELTPFVSNNQTPPIVIHQDNSTFPISTILDETNYSLWSQLMEMRIGARNKAGYLTGETKKPVPEDPNYKTWVTENQKV
KSWLIDSMSPSLMQRFIRLPTAKEIWEAVSRTFYDGSDETRLFELNQKTFSTTQNGRPLSIYYNELVAIFQKIDHRTASQ
AETVEGVVQLHSAMARLRVHIFLSGLDSEFDQVHGEILRKDPKLDLESAYAYVRKDYQQRQTMGGSRVISESSAMLANRK
LHGSSSTSAKTRNNQFVGKSNNFICSHCGETGHSKQRCYEIIGYPEWWDFSKKPRKKIVGKAMMTSSKEVECNTKDNLQP
IANVAHPGIINQANIFSATSKNTTWIIDTGAYDHMTRDPSQLQSIRSSSQSVISTANGSTTPITGEGSAILSDTLTLDTV
LIVPSLEYNLLSVSQITLSLDCTVTFWPSFCVFQDILTRKILGYGVKRGKLYYLELTENGEQKVSRACQTSSEEKARTTI
WLWHRRLGHLSFRYLQKLQPHLFLNLDVSDFHCDICELAKSHRIPYLPSMNKCSEPFVVIHSDIWGPAKVPSLSKALYFV
TFIDECTRMTWVSLLQRKSDVFTAFQTFHSLVGTQYQRQIRVWRSDNAKELVDAKFKNFLSQKGIRHHTSCTYTPQHNGL
AERKNRQIMEVVRASLFGMNMPRFYWGEAVKSAAYLINRTPSRVLNFQTPQQKMQSFFSIPHVPNLEPRVFGCTVYVHIP
KNLRNKLDLCAKRCVFVGYSDFQKGYRCYDPQTQKLHVTLDASFREAEPYYSGGVHAPSLQGEKSEEENVLQKNSSKGDE
DVFFEVEKMHENVGRSSQENLAENDNELMVPFENMSKLPVAADLPLITPLTEESTQNVQNTSPQVIPNPISNETNISSEF
MTPRYPQRSNKGVPKKQYEPDPKAKVKYPINNYVSTHKLSESYALTINQLSEVSIPSSVQDALQDPKWKKAMNEEMEALQ
KNSTWELVPLPNEKKTIGCRWVYTVKLKADGSIDRYKARLVAKGYTQKYGVDYQETFAPVAKLNTIRILLSIAANRDWPL
QxFDVKNAFLNGNLEEEVYMELPPGFIQNSLSKNKVCKLKKSLYGLKQSPRAWFGRFSAAMKAFGYKQSNSYHTLFIKHK
EGKVTTLIVYVDDMVLTGDDSCEMKLLQEYLATEFEMKDLGQLKYFLGIEIARSKHGIFLSQRKYVLDLLTETGMLACKP
VDTPMEMNHKLGIFPNQALTDIGRYQRLVGRLIYLTHTRPDIAYAVSVVSQFMHAPSEDHLNAVYRILRYLKGTPGRGLL
FSKNGSSTIEGYTDADWAGDQTTRRSTSGYFAFVEGNLVTWKSKKQKVVARSSAEAEFRGMTHGICELLWIKSILEDLGI
KYEKPMSLYCDNTTAIEIAQNPIQHDRTKHVEIDRHFIKEKLDQKIIHFSFVKFENQLADILTKAVTGKRFSEMTNKLGM
IDIYAPT
>Copia2_XT#LTR/Copia 112-3928 via tfasty with ATCopia78_2-4077, 4 frameshifts and 2 stopcodons. [Xenopus (silurana) tropicalis]
MKLKETILHEPSDDTDSDGDTSKKEEAYAELVQFLDNKSLSLIMREAADDGRKALQILRNHYAGKGKPRIISLYTELTSL
QKTANESVTDYIIRAETAITALRNAGETLSDGLLIAMILKGLPETFKPFAIHITQGDGKMTFTEFKTQLRSFEDTEKYRV
SPNTDNVMKVSTPVTTARKRGNLNFICYNCDQKGHKANACPSKLNKRRSQWCNYCKSPTHKEAFCRRKARDNVKQATDDA
EQTFAFKISENQSNSLITKGLMVDTGATSHIITDIKKFQRFDDTFKPEKGKRLLExHSGEVTQKCAxLTRKGNQVKTTLL
NALYIPTYPQDIFSVEAVTRNGTSVKFHQDGSELIHKNGTKFIIKKYNRLYYLNTFDETNDSCHGCYDIQTWHEILGHCN
YDDILKLQGVVEGMNIKGKVDKSNLKCEICTQGKFVQNRNREPDTRAKHSLELVHTDLSGPIEPVAKDGFRYAIAFTDDY
SGTVFVYFLKNKSTVLATEKFIADTNPYGTIKCMRSDNGTEFMSKNFQSLLSKKSIRRYETSAPYSPHQNGTAEKNWRML
FEMARCMLLESKLPKELWTYAVMTAAMIRNRCFNNRLRQTPYYMLMGRKPNLQIFGSECFAYQYDRKKLDSKCKKGIFVE
YDRNSPSYLVYYPETGKVFKQRLVKFITKCVTERQTQTDLSNDDDFIYSVCPISNQNPGEALVSQTEITEGNNNGQIQDS
YCTRYPKRERKSPQYLDDYVLKSDCNDQILTNIDYCYRVHDVPQTFREAIDSPQSKVWLNAMKDEMDSLKENDTFTLTTL
PEGKNSVGGRWVYAIKSNTDGSETYKARYVAKGYNQVNRIDYMETFSPTVNFTSIRILMQMAVQYDFVLHQMDVKTAYLH
APIDCEVYMDQPEGFEVKTETNDRLVLKLNKSLYGLKQSGRNWNKMLHNYLCTSGFVQNSVDHCVYIKQSGSERVILLIW
VDDLIIAASNETLLTDVKAMLATRFKMKDLGKLKYFLGVNFEQTGEVIKMNQKKYISKILEKFGMSDCKPRSTPCEQKLE
FNDSDPTDAKRYREVVGSLIYVTTCTRPDLSWVISKLSQHFSEPNEQHWTIAKHVMRYLKGTIDFELCYRKCNENLKLEA
YSDASWASDLNDRRSTTGYCFSLTKNGPLISWKSKKQPTVALSSCEAEYIALAATTQESLYLVQLLKEMDSECQNEPVKI
FKDNQGAIALTKNPVCRQRCKHVDIKYHFLRSALSEGKITLEYCSTNKMVADVMTKPVTKFKLEVFTNYIFGE
>RTE-1_DF_pol#LINE/RTE-BovB 5-2608 Fragment [Drosophila ficusphila]
RARPITIVQCYAPTEDANDDIKDDFYTALTTTLTDIPRGNITVLMGDFNAKIGPNFTRMRSATGGHGIGTRNNNGDRLVE
VCQMFQLIIGGSMFPHRDIHKYTWTSPSGNTRNQIDHICISRKWRKSLLDVRNKRGASIDSDHELIIGELSIKLDRNRPR
NADDSRNHRPSPLNIHLLGETDISARLASTLRTHLLPQQGQTWEQTCDTLRTTAEGIIGTQQRRRNNWISSATWDTINKR
NSLKLLADRDSNRRDEHRALCKAVKRAARNDKRALLDRLADNAERAANENNMRSLYQTIEQISGGYRRKTQPVKDANGIL
LTSDDDQIHRWRQHFMEISNSDMPSRSDDYRSVAPANGNRRISSAPPSVREIGNAIKKLKNNKAAGMDGIPAEILQVDTQ
LMAEILHPHFSSAWESEHIPDSWKCGVIVKIPKKGDLSDCNNWRGITLLNTSYKVLATILNERLTEKFEPTLRDEQAGFR
PHRSCVDQANTLRIITEQAVEWRAPLYLLFIDFKKAFDSINRAAIWGALARKGVPHKVIALIKALYDDANLAVLHNGKTS
APFQTNTGVKQGCPLSPLLFNIVVDEVMREVCKHKRGITWSFTRHLEDLDYADDICLISHKLSDIQSKVDDLVNLASRVG
LQINTAKTKAMRLNHASQGNIIVDGNPIEYVESFPYLGTVISSNGGVTEDVTSRLAKARSAFGRLYRIWRSRQIRRKTKI
RIFNSCVKSVLLYGSETWLTTKTIIQQLQAFTNKCLRIICGIFWPNRISNIDLWNMTGETAIRLQIRKKKWRWIGHALRK
DQXSIVRTALEWNPQGSRRVGRPKATWRRTALQELSQYNITWDTAKQTAXNRVRWRNLVEALCSQEEL
>RTE-1_AC_1#LINE/RTE-BovB 668-3905 via tfasty with RTE-3_NV_pol, 1 frameshift. [Anolis carolinensis]
MNFGTWNVRTLLDNTDSERPERRTALIARELGRFKIDIAALQETRRAGEGQLKEEKGGYTFFWKGLPEEERRIHGVGFAI
RNDLVKHLTEAPTGINERLSTLRINLAKNQQATIICAYAPTLDADEDIKENFYCQLDTILSEIPKEDKIILLGDFNARVG
RDSDLWPGIIGKDGVGNSNSNGILLLTKCREHNLVITNTLFRQKNKLKTSWKHPRSKHWHLLDYVITRARDRRDVLLTRA
MTGTDDCWTDHRLIRSTMAIKIVPKRRLQGRKTRRKMNTQALQEPSKRALLQTTLKDHLPTEHPENVEEHWNKLKTSIIT
ACEESIGYLTKKHQDWFDDNDKEIQQLIDNKRKAFQTWQRDTNCAAKKKIYANAKAEVQRRTRELKNIWWTKKAEEIQHL
ADTHDAQGFFKATKIIYGPRNHGIQPLRSSDGTKILKDKTSIALRWKEHYQNLLNRSSNVAEETLSQIPQQQTRDELAAL
PSLEEVSNAISQQKNNKASGPDGIPAEIFKEGGPELIQQLHQLIKKVWMTEKIPADFKDATIITLFKKGDRTDCGNYRGI
SLLTSAGKILARILANRLLPVSEDTLPESQNGFRPSRGTVDMIFTARQLQEKCREQNQPLYMAFIDLAKAFDTVNRSALW
TILQKIGCPDKFVNILRLLHDDMMATVLDSNGSQSDPFKVESGVKQGCVIAPTLFSIFIAMILHLVDGKLPTGVEIIYRT
DGKLFNLSRLRAKTKVTTKSVIELQYADDNVICAHSEEDLQATLNTFAEAYEKLGLSLNIEKTKVLFQQAPANPSAKPGI
QLNGVTLENVDHFRYLGSHLSTKVNIDTEIQHRLSSASAAFFRMKQRVFDDRDIRRETKVLVYKAIVLPTLLYACETWTV
YRRHTKLLERFHQRCLRKILQISWEDRRTNVSVLEEAKTTSIEAMLLRHQLRWTGHVVRMPDHRLPKQLLYSELKNGKRN
VGGQEKRFKDGLKANLKNCGIDTENWEALALERSDWRSAVTSSAAEFEEARTEGLREKRAKRKERQANPDRDRLPPGNRC
PHCGRICGSRIGLFSHLRTHAQDTKVGRLSSSNVEGSPK
>RTE-1B_DAn_pol#LINE/RTE-BovB 322-3231 [Drosophila ananassae]
MTTLRFSQRTRIGQWNVRTLMEPSRLAQFEKEMEKMQIAIAGISEMRWKGSGTTTTTHGNLVVHSGSSDGGRNGVGIYVS
KQYKQTLITWNPVSDRIITARFRCNARHITIVQCYAPTEDASDDIKDDFYNALTSSLTKSKRGDIKILMGDFNAKLGPNN
NGLEPIMGRHGVGTRSNNGDRLADLCQTFQLVIGGTVFPHKEVHKYTWTSPSGHTRNQIDHLCISRKWRHSLSDVRNRRS
ASIDSDHELLVGELLIKLRRSHTATRRSTRRPPPLNLHRLGDPVISTRLATMLREQLTPQQNHTWEHTCSTLRSTAEGLL
GTRQRRSTDWISTRTWELISRRNSLKSKADHDCRARDEYKELCKLVKKSARNDKRALIDRLAENAESAANANNMRSLYQT
IGKLSGSYQKQNHPVRDVNGTLLVDDDAQIRRWRQHFLEISHTEHASSADDDFRSIVPNTNTRIPHTTPSVREIRDAIRK
LKNNKAAGEDGLPAELLQVDTLLMAETLHPHFESIWENERIPPSWKKGIIVKLPKKGDLSDCNNWRGITLLNTSYKVLAT
LLNERLLEKIEPTIRDEQGGFRPHRSCVDQANTLRAITEQAVEWRAPLYLLFIDFQKAFDSVDRAAIWRALARKGVPLNI
INIVKAMYDDADLAVLHNGKISAPFQTNTGVKQGCPLSPLLFNLVIDEIMSEVCSSNRGITWSLTRHLEDLDYADDICLL
AHRFTDIQAKCSDLEARAKAVGLSINAAKTKAMRILHSHQSRITICGKSVEYVDSFVYLGTVISANGGVEKDMENRLSKA
RSAFGRLQRIWRNQQISRKTKLRIFNACIKSVLLYGSETWLTSQRMVLKLQAFVNKCLRIICGIFWPNRITNDDLWRCTN
EAPIQQQIKRKKWKWIGHALRKGRDSIVRMALEWNPQGSRRVGRPKLTWRRSTVRELADNNITWDLAKRTAQNRVRWNAL
VDALSSQAE
>RTE-2_MD_pol#LINE/RTE-BovB 299-3463  [Metatheria]
MDNMKSSRPERQTALVVRELSRYRIQIAALSETRLANEGQLTEVRAGYTFFWSGRHDEEHREAGIGFAIKSNLVNKLVCL
PKGVNDRLMTMRLPLAGKCHATIISAYAPTMMNPDEVKEKFYEDLETLINSVPKEDKLVILGDFNARVGTDYQTWQGVLG
RNGVGNSNSNGHLLLKTCASHDLLITNTVFHLPKRNKTSWMHPRSKHWHLIDYVIVRRRDRQDVRVTKAMCGAECWTDHR
LILSKLNIHIQQKRWPQGKTTTRRLNVNRLERFSVREQFVADLEGKLSQHTVGNSGAEKEWAAFRDLVYSTTFTHLGQNT
RKHQDWFDENDGEIQKLLNEKRELHRVYQQDSSSVSKKAAFNSIKSKVQTKLREMQDSWLSKKADEIQFYADSNNPKRFY
DALKAIYGPKTYGASQLLSADGATLISDKDMILERWAEHFHSVLNRPSSTNAEAIDHIPQVEVNPSLAELPTEEEVLNAI
RLLSCGKAPGADSIPAEIYKAGGPLLIQKLTEIFRVIWQEEVIPQEIKDASIVHLYKGKGNRLSCDNHRGVSLLVIAGKI
LARVLLNRLILHLEDGHLPESQCGFRKGQGMVDMVFAARQLQEKCQEQNRGLYTTFIDLTKAFDTVSREGLWKIMAKFGC
PEKFISIVYQLHDGMLARVLDNGRCSRAFPVTNGVKQGCVLAPMLFSMMFSAMLSDAFNEDENGIKVSYRTDGKLFNLKR
LQAKTKVEGELVHDFLFADDCALNAASETEMQQSMDRFSAACANFGLTINTKKTEVLHQPAPHHPYVEPSVTANGEILNA
VDKFTYLGSILSRDXHIDDEVDARIARASSVFGRLRRKVWERRGIRLPTKLKVYRAVVLTSLLYACETWTXYQRHARKLN
RFHLNCLRKILKITWQDKVPDTEVLSRAELPSIQTLLQRAQLRWAGHVVRMPNVRLPKRLFYGELTQGKRSHGGQKKRYK
DTXKVSLKNFGIDCETWETLAQDRPAWRARIKEGAVLYEQSRIAVAQKKREMRKFRDISIPNVHTGYLCPTCGRAFRAHI
GLISHSRTHCTLTPT
>RTE-2_CQ_pol#LINE/RTE-BovB 616-3624  [Culex quinquefasciatus]
MARRLEIRNKRQKPIEKQTTDWRLGSWNCRSLNFLGFEFALAXELQPRNFDVVALQEVCLEEEQVLDWPGRQTNSRFXLS
GGKDKKLGTGFIVRGKMQDRVFGFTAXSERMCKLRIRGRFFNYSIINVHCPHEEKTDDEKEAFYATLEEVYDGCPRQDVK
IIIGDMNARFGREEMFRPTIGPESLHAVTNDNGQRCIDFAASRGMVVRSTYFPRKDIHKATWTSPDQRTKTQIDHVLIDG
RFFSDVTHVRTFRGANIDSDHYLVGVDMRSKLSTVFNQRRSRRAPPFNTACLQNGEVAHSYAQQLEANLPGEEELGAASL
EDGWSRIRSAIGSAAEATLGSAIRVSRNDWYDDECQRITAEKKAAYDRKLHKATRGNVERYRQARNRQVAVFKLKKRQQE
DRDCAEMEQLFRANETRKFYEKVNRSRKGFVPRADVCRDNGGNLIVNKSEVLDRWKQYFNEHLNGDEADGDGVGVNLGAP
AADEQFPAPDLETVKREIRKLKNNRAAGKDRLPGELFKYGGEKLARALHCVISKIWEEEKLPEEWMDGVVCPIYKKGDKL
DCGNYRGITLINAAYKILSQILCRQLSPHARRFVGPYQAGFTGARATTDQIFCLRQILEKCREYNVPTHHIFIDFKAAYD
TVDREQLWQIMHENGFPDKLTRLIKATLDGVMCHVRVSGXLAEPFGSRRGLRQGDGLSCXLFNIVLEGIIRRAGIETSGT
IMNKSYQLLAFADDIDIVARNLETVMDVYTRLKVQARRVGLGMNTTKTKYMRGRGSKDVGPPSLTPLTVDGDELEEVSEF
VYLGSLVTADNDTSKEIRTRIFAGNRAYFGLRKTLTSDRVQRRTKLTMYRTLIRPVVLYGHETWTMRQEDERALGVFERK
VLRTIYGGVQVSDGVWRRRMNHELHAFLEEPTIATQAKIGRLRWAGHVARMDESQPVRLLFDRAEPAGGTGRRAGKPRAR
WGDQVNGDIRKICNLGNWRVAAQDRERWKRLLATARVPGALC
>GAMERA_pol#LINE/RTE-BovB  3-795 (fragment) [Oryzias latipes]
PTKEEIVSVIKSLKSNKAPGHDNLNAELFKTDTETASKILQPFFKTVWKSASIPEEWTKGVIIKIPKKGTLSECNNWRGI
TLLSIPSKIMAKIIINRLSEAVNATLRKEQAGFRKGRRCTEQIFALRNIIEQSAEWQQQLFVNFIDFEKAFDSVHRDSLW
RILRAYGVPTHMIKLIRSFYNNYRCCVGGSDIWFEVKTGVRQGCVMSALLFNVVIDWVMRRTTEAGPTGIRWTLFSTLED
LDFADDLALISHIHRHMQDKTDRL
>Rex1-2_FR_pol#LINE/Rex-Babar 3-2084 Fragment. [Takifugu rubripes]
RWTSEAVEELRTCLDTTDWDMFKGATHDLDEYTDTXTSYIHFCEERILPTRTRVSYSNDKPWFTPRLRQIRKEKEAALKS
GDRDCYREAKYRFSKELRRAKSVYSEKLQQQFTANDSASVWRGLRQITDYRPQASKGQDDKALCQSLSLHYARFDTSSAM
PNTSPPPSATAPMDLTPSKAVPSSSPPPLTITHHPPPPHHLPPVPPSSPPPHHSPSVPPPHHLPPVPPSSPPPFTISEQD
VRRQFARLNPRKAPGPDGVSPSTLRHCAEELTPVFTDIFNSSLESCQVPACLKTSTIVPVPKKPRITGLNDYRPVALTSV
VMKSLERLILPHLKSITTPLLDPLQFAYRANRSVDDAVNLALHSILQHLDSPGTYARILFVDFSSAFNTIRPALLQDKLS
QLSVPDSLCRWITHFLTDRRQYVRLGKTVSDSVSISTGSPQGCVLSPLLFSLYTNCCTSSHQSVKLIKFADDTTLIGLIS
NGDETAYRREVARLVSWCGHNNLQLNAQKTVEMIVDFRKVTAPLPPLALMDSPITIADSFRFLGTTITRDLKWEPTISSL
IKKAQQRMFFLRKLRKLKLPPRMLAQFYTAIIESILTSSITVWYAGATARDRLRLQRVVRAAEKVIGCRLPSIQDLYISR
TRRRAGRITADPSHPGHGLFSPLPSGRRLRSIRTKTSRYMNSFFPSAIRLLNTK
>REX1-1_DR_pol#LINE/Rex-Babar 11-2971 [Danio]
MAARAQREAQGLSSFCIFAVLFLLISGLFVQNSGAFTSYTRQELLDIGLCIPDSFISNLRLIHEIARTPRAGRPARPGGS
ARRPRRERKQRRGKRGGLRAKLKLTPHRLSLPSIFLANVRSLVNKMDEIRLRINHSKRLWNCNVMIFTETWLNSGIPDNA
VSLTEHHTFRADRTADDSGKTRGGGLCIYINKAWCTNSVVVGRHCSANLEFLMVKCRPFYLPREFTSTIISAAYIPPDAD
AKLAMNELHAAISKQQTAHPEAAFIVAGDFNHSNLKTVLPKFHQNILCHTRGNKTLDHVYTNIAEAYAVTPLPHLGQSDH
LSLFLTPKYSPLIDRVKPSVRTIKVWPAGVDSTLQDRFQHTDWGMFASQATHGSHTDIDSYTSSVLEYINTTIDSVTTQK
QITTYPNQKPWMNKEVRLLLKARNTAFRSGDAQAYSTSRANLKRGIKKAKHCYKLKLEEHFSNSDPRRMWQGIQAITNYK
PSQSTPTATDVSFLNELNDFYARFDRDNKEPYTRITSSTDHSPITLTSSEVHTALSRINGRKAAGPDGIPGRVLKVCAEQ
LAGVFTDIFNLSLNLAAVPTCFKTTSIVPVPKHSSPTCLNDYRPVALTPIIMKCFERLVLAHLKDSLPSTLDPHQFAYRG
NRSTDDAVSIALHSVLTHLDNKNTYARMLFVDFSSAFNTVIPSKLLIKLRDLDIDTSLCNWIMDFLTNRPQNVRSGHICS
TTVTLNTGVPQGCVLSPFLYSLFTVDCRPVNRSNTIIKFADDTTVIGLISNNDETAYREEIQHLATWCTDNNLLLNTNKT
KELIVDFRKGRTGSHDPIHINGMAVEPVSSFKFLGTHISKDLSWTTNTSSLIKKAHQRLFFLRQLKKNQLSSAVLVNFYR
CTIESILTNCVTVWYGSCSVAERKALQRVVKTAQRITGTTLPAIEDIQKKHCLRRARSILKDTFHPAHRQFSLLPSGRRF
RLPRTKTSRLRNSFFPRAVSLLNSAPH
>REX1-5_XT_pol#LINE/Rex-Babar 1-3009  [Xenopus (silurana) tropicalis]
MRFEGVIVFSYVILILITCLAFRVISAQQQGGGSFVFTREQLIALKTAGTRDLILYKILNIPKEIRRRTLRGCRGGRKWR
GGVKEEEKRAAYKERMRTYKPYVPSLIMGNVRSLDNKMDELTALVRTENIFRECSLMCFTETWLHSNVPDSNITLDGYSA
IRSDRTWRESGKRKGGGLVVYINNMWCNHGHVTVKECVCSPDIELLAVGLRPYYLPREFSQVIITAVYIPPSANAAVACD
VIYSVTAKLQTHHPDAFLLISGDFNHTSLTKTIPTFPQYVDCHTRGERSLDLLYANVKGAYGAVALPPLGRSDHNLVHLM
PIYKPVVQRQPAIVRSVRKWSEGAIAMLQDCFEATDWEVLSAPYGEDIDGMTDCITEYINFCVDVCVPLRDICCFSNNKP
WVTKNIKACLNAKKSAFRSGDREAVKKAQKMLTGKIKEGKESYRRKLEQRLNQNNTREVWRGMRSITGYKTSGQAIEGNV
ECANDLNTFFNRFDVPLSHTSPGFSRNSHFPAPRSPPTQGTATVSTSVLPVINITVEQVKYGLSKISPTKAVGPDKIIPI
VLKSCAPQLCGVLQYLFSLSLSLQRVPALWKTSCIVPVPKIPRPCAQNDFRPVALTSHIMKVFERLILDAFRPLVKFSLD
PLQFAYQPFMGVEDAIIHLLHRTYSHLDKPRTTVRMMFFDFSSAFNTIQPAVLGEKLRNINIDIRLVSWIMDYLTCRPQY
VRLQNCVSETLICSTGVPQGTVLSPFLFTLYTSDFRYNSESCHLQKFSDDSVVVGCIKEGDTSEYQSVVDDFVSWCECNY
LQLNISKTREMVVDFGRSKIHVTPISVKGEIVDMVSDYKYLGVHLDSKLDWSLNTMALYKKGQSRLYFLRRLRSFNVCSI
MLRMFYETVVASVIFYAVVCWGGNIKVSDKNKLDKLIKKAGSVLGMELDSVDAIAKRRILCKVQSIVNNPSHPLYSVFAE
QKSSFSQRLITFRCSTERHRRSFLPTAIKIYNSSLSVFHTHI
>BovB_Plat_pol#LINE/RTE-BovB 197-3334  [Ornithorhynchus]
MIKMLIKDNGRDSSFHCAEGGNGKPLPYFYQENSMDTHTRTTTDIVLEDEPLRSEGTQRATGEEQTMSQSIVGVYDVAGI
KPSGPPVADVAIREMSIRSCKDTLIIGTWNVRSMNQGKLEIVKNEMDRLKIDILGISELKWTGIGHFQSNEHIIYYSAHA
EKRRNGVAVIVTKKIAKTVIGYNAVNDRLISVRFRGKPFNMTILQVYAPTTDAEQEEIDRFYDEVQREIDKSCKQDVLII
TGDWNAKVGNGMEMKVVGKYGLGNRNQAGDRLTDFCESNDFFIANTFFIQPKRRLYTWTSPDGLYRNQIDYIICRKRWRS
SILAAKTWPGADCGTDHELLMCKLRLKLRKINHALQLPKYDLTNIPPVFKDHVKNRFEALNLTDKEPEKMWTEIKNVIKE
ESDTVLQKVRKKKKPKWMSNITLEVARKRKEAKIRGQKNLVKELSREFQRSARKDKQEYYNSICKEMEVNNKCGRTRSLF
QKIKEIKGTFRPRIGFVKSKDGLTINDASGIKQRWKEYTQELYQKDSNIQEVFEEVPFELEPLIMESEVRSALHCLAKNK
APGFDRLPIEVFQAAGEESVKVLTKLCQQVWLTTQWPSDWKRSVYVPILKKGDTTKCDNYRTVSLISHASKVLLKVIQRR
METYMERELPDVQAGFRKGRGTRDIIADVRWIIERTREYQKEVSMCFIDYSKAFDCVDHEKLWSTLRKMGMPDHLIALIR
NLYDEQEATIRTEYGETDWFPISKGVRQGCILSPYLFILYTEYLMREAGLDEDERGVKIGGRNINNLRYADDTTLLAESE
EDLKGLLLKVKEQSKKMGLHLNVKKTKIMTTGSFNTFVVDGEKIEIVDNFSLLGSIINNKGTSSQEIRRRLMLGRLAMKS
LEKVMKCADVTIATKIQIVNSMVFPVTMYGSESWTVKKQDRKNIDSFEMWCWRRLLRIPWTARKTNKWILEQIKPKWSLE
GQMTRLRLAYFGHIIRRTNSLEKTLMLGKVQGKRGRGRPAARWIETITTITEEPLERLRIMAEDRTFWRKYIHGVAMNRK
RLDGT
>4049661_Msa#LINE/RTE-BovB  gi|4049661|gb|AAC97621.1|  ORF MSV061 putative LINE reverse transcriptase, similar to Caenorhabditis elegans GB:U00063 [Melanoplus sanguinipes entomopoxvirus]
MKYEFMKIKKYIMSFLIESEWQNIKSNIIKVKDKNVTKYNINNIINNIKKNDYTKQCFINELMLFLKNGLKYNKCTITEH
EWVKYYKQLLYDEKLISSLPQIIDFDGLDNINIFELNILMEKCKLIQYDINLQTKLLNLFNECWKYKKIPDEWLISKIKS
IHKNGDKNICNNYRGINLINWACKLYSKILNNRLKPIMENLISEEQSGFRKNRSIKDNIYILHEIIRNRKKETYFAFIDF
KKAFDNVDREILWNIMHLHGYPPHLINAIKSLYENTRIIVKSKVIKINKGIKQGCAVSLSLFNIYIDHIMNEWKQHNIKG
IELNDNTNLNYILYADDLVIISTNKNDFIHGIDMLNNLSKKYKLPISFEKTKVMAFKGTETINIEIYIDDNLIQQVDCFT
YLGYEISYTNKINLLYKLNQFDKICNLIINSLKDKVDIKIIIHVYKILAVPIFTSRFIFYELSSEEENIITRHEMHFLKN
ILDFNLEDDIIRQILDVYKLVDKINESKYKWKERLSSMDYDRLPMKIVNFH
>RTE-2_SP_pol#LINE/RTE-BovB 249-3344 (replacing the fragment gi|72094933|ref|XP_797963.1|) [Strongylocentrotus purpuratus]
MMESLNSTRVKAPDNTNQPFRPTGLQTAVHDDASSPNPVGRDHVDNPKEKTALLTAKKLIGIGTWNVRTLNQDGKLDILL
NQLEKFKWEVIGVSETHWKESGDFTEGGYKVLCASEEDVHRRGVALILNKQAQKALLGYNTISPRLISARFQTQAGALTI
IQVYAPNMADREEMIDTFYDQLQQTIDDTPNKDILIVQGDLNAKVGRDWDTWKNVIGHHGYGEMNNRGEKLLNFCMANNL
AIANTMFKQKKASREWTWESPDGRTKNKIDFVMVNNKWKSSVQCARSFPSADVASDHQLVICNFKLRFKTKPKQNXMKRY
DVSKLKDENTSKNYQAIIGGKFRPLLDHSDTHLDIDSIWEKIKQAFNSTAKDVLGMKKNRPQEAWISQEVLDLSEERSKI
KQAKQNDPSLKPRYNFLNREIKRKTRGCKDAWLQDLCSRVESAHQAAKSKEVYATIKKITKSASKRMQSVKSKTGRTLTE
XSEVKKRWKENYDELYNEHNPKNDTVANSLPNSSSDDPEPNILKEEIKSAIKKLSEDKAPGFDTVTSEEIKAAGETGTDI
FHYLCNQIWESEKFPEEWGRAIITPIYKKKDKLDCGNYRGISLLSHAGKVLTTILQRRILKRTEEILSESQAGFRPGRAT
TDQIFTLRQIAEKYLEKNRSLYCCYIDFQKAFDSVWQKGLWKAMGCFGYPSKLIRLLQALYDQSQSTVRVNGELTEWFKT
TVGVRQGCAISPQLFNILLELVMTMAMEEVQIGAKIQGTCINNLRFADDIVLIAETPEELQTLVDKVYKASCDLGLKVNI
AKTEVQAISKSKCNLNIDIANDRLKQVEDFVYLGGXIAENGSSXSDIKNRIXKAGAAFQRLNNIWTSKSISSHTKMQLYQ
SLILSILLYGAESWTVKKEDSNRLQVFEMACLRRIMGVTRLDKIRNTHIKESLNLDQDVMDKVSTKRXKYFGHVLRMKPT
RYPKIAVEGKVTGNRPRGRPPKRWLDCISEDCKARSIPRLTDASRLAADRKTWHTITIQKPSRGPXPAWTA
>RTE-14_BF_pol#LINE/RTE-BovB 81-3461  [Branchiostoma floridae]
MSPRCNCSYLTWGSSVSATGDGLAVWRGVDCGSSEVLYNEGAHWPKLAVVWVTGTLGQDKSLKHPGNEDWQPLPVFAVYG
SKMDRESSPKPILPGAGVPRSVAGSRVGPRRHHDDSPVNSREGGELDDHIRRNATTKRHILRCRHPLRLCTFNIRTLKVS
DVGSSKIKTVYKTEELCRNLKQFGIEICGIQETRWMHKKDRRDEINSYTEPFGYTLYTVSAWENESKAATGGVGIILGRT
AQDLLISVERISDRIIKVQLRGNPAVTVIVAYAPTEAADDCSKDTYYSQLRQTVEGVAPHDFLAVLTDSNARLGPEDAQF
TYNSSTNNNGQRLLEILEDYQLLATNTLFEKRKGKLWTWRSPQDTYHQLDYIIVRAKWRNSVTNCEAYSSFSSLYSDHRA
VTANISLRLRKSKIKNPKQNVKYIWSDLAADEGLQERYAVEVRNRYQALLLEDDEGQTEDYDKFISANASAAEECLRKVP
KQKKRIKCLDPRVSAVREEVEKAYQAYLAGNKKEELREKYKEKKQELYGTYAVIDEEELTSKIEEVEKAHKNSQHGAAWK
LINDISGRNSAQSSKLKANSPEERVSLWYTHFSKLLGSPPVISEEDTPIKPVFDTLNMSDEVFSEAEFIAAKMSILCGKA
CGDDGITPEFLKYAGLDDVVLGFINKAFSTGQLPERWKTLIIVPVPKTGDLTKPDSYRGISLISLVLKLYNRMLLNRLRP
LLDPLLRSSQNGFRQGRSTVGQIMAIRRLLEGVNHKNLSCIITFIDFKKAFDSIHRGKLMDILRAYGVPEKLVTAIAATY
SQTWAKVRTPDGDTEPFQILAGVLQGDTLAPFLFIVALDYALRCAIEGKEERLGFTLKERASRRIPAKIVTDLDFADDIA
LISDTAEKACTLLNAVERQCQRIGLQLNTKKTKVMAFNSSDNNVATLDGTRLEVVPDFKYLGGWIASTAHDMKVRRALAW
NALHSMRRVWQSGMADDLKRRLFVSTVECVLLYGSETWTLTVQDERALDGMYTRMLRRALNVSWEDRVRNIALYGNLPRL
SDKIRQRRMQLAGHYVRHPELVASELILWEPVQGKRKPGRQRTTLIDTLKRDSGLDRLSSTAELRSLMKDREEWRRRVQH
ASRVGI
>RTE-12_AMi_pol#LINE/RTE-BovB 648-3840 via tfasty with RTE-2_Crp_pol, 4 frameshifts and 2 stopcodons. [Crocodylidae]
NARKKLSILKTGSWNVHTMTPGISDDLQTIDDARKTAVIDAELLRLNVNIVALQETRLPGTGRLKEKNYTFFWCGKQPKE
IREHGVGFAVKNKLLFAIEPPNKGSERLMVLRLTTASGPVNLLCAYAPTLTASSKSKDRFYDELSAVINNISPNEKILLL
GDFNARVGAEHAAWPHCLGTNGVGKMNENGCLLELCSCNELCITNSFFNVKPQHKVSWRHPRSGHWHQLNLIITRSQDFH
DVIITRSYQSADCDTDHSLVCTKVKLRPRKLYKSKKLSLLRINATRLKAEDTSSQFIKTLSGALSYLKPCNTAEEKWVQL
KGAIETALDSCGTLHRSSNDWFDENSSEMIPLIEKKWSALLKYKCDPSHSNLQALxEIRQKVKRTVRRCANDYWLQLCES
IQKAADAxGDMQAMYRGIRKALGPVPRKTVPLKSSTGEVINDHNKQMDRWVEHYSELYSRENVVRDFALDALEDLSTLTA
LDHEPTVDKVEKAIDQLACGKAPGADCIPAEVIKCGKSVLLFHLHELICMCWREGEVPQDMKDASIVTLYKNKGDMSDCN
NYRGISLLCIIGKLFAKVVLLRLQTLADRVYPESQCGFRSGRSTTDMIFSLRQLQEKCHEQRKSLYIAFVDLTKAFDLVS
RDGLFRILKKIGCPPKLLSIIKSFHVGMRGTVQFDGSHSEEFEIKSGVKQGCVLAPTLLGIFFAVLLKYAFSGCSEGVYL
RTRSDGKLFNLAHLKAKTKTREVLVHEMLFADDAAIVSHSEAGLQSLMDRLSHACDDFGLTISLKKTVVMGQQVDRPPEV
RINDESLEVVEKFTYLGSAVSQNLGLEAEINARIGKASNAMAKLQKRVWKNRVLTLSTKMSIYSACVLSSLLYGSETWTP
YAKEERKLNSFHLRCLRHILGITWHDKISNSAVLEWAKIPSMFVLLRQRRLRWLGHVNRMSDGQIPKDILYGELTTGKRQ
LGRPKLRFVDVCKKNLCELRIDGQCWESIASDRCEWKAAVKQGLHHFEMERVNDELEKRRQRQARQNGTRHASASSTEFV
CATCRRVCLSRIGLLSHSRSCGGTR
>RTE-19_BF_pol#LINE/RTE-BovB 1-2274 fragment [Branchiostoma floridae]
MVNKKWQRSVLDVRAYRGADVGSDHHLVVTKVRLKLRASPPTKQRCKVFDTAKLRKPEIRREFALELRNRFKALENLVDE
EEPNVVETSWDTITKVYSETAKKVLGHRKRKDKEWLTQETWRKIEERKVAKQKLLTSKTQQAKEAYRNKDKQVKRSARRD
KRAFVEDLATEAEQAATRGELSTVYRITKKLCNQSSASSVPIKDKQGKLLTSEREQTARWAQHFEEVLNRPEPDVPADPT
PSVDIPINIDPPTEEEVETAIKALKNGKAPGIDSIQAELLKADCATATLLLTDLFAKIWKHEVIPQDWSKGLIVKIPKKG
VLSNCDNWRGITLLSIPSKVFCRILLKRIDSAIDSRLREEQAGFRKGRGCSDQIFALRNIIEQCIEWNSPLLINFIDFQK
AFDSVHRESLWKILRAYGIPHKIVTLIETFYKHFECSVITENSLSESFPVRSGVRQGCILSPILFLITIDWVMKETTSDR
PRGIRWTPSKYLEDLDFADDLAVLASKRTLLQEKTDRLSERGKQTGLYINKKKTQVMYINTPTTPPISLDGEVLESVGVF
TYLGSVMSTQDGARKDIKSRLDKARASFSRLQTIWKSKQYSRKTKIRLYNSNVKSVLLYGAESWRATKTDMRKLDAFHNN
CLRKICNIFWPNKITNEELHRKTECRRITTEITHRRLKWLGHVLRMTDNRIPKVALTWRPDGKRKRGRPKTTWRRTVSDD
LVSMGLSWKSVQTAAQDRPRWRKKVIALCLTRDEEDK
>SR2_pol#LINE/RTE-BovB  gi|5597017|gb|AAC24982.2| reverse transcriptase [Schistosoma mansoni]
MLPPIMNTEAVFLKPRTPFKLASFNVRTLMQIRQQMGLAMSLESLNVDVCCLSETRIQDSSEVLQIRSPSVASKSLFHVR
LSGDPVASSSGLAGVGVALSARAEAALIDWIPINSRLCAVRLESSIKVRRNRREKRCLFVISAYAPTDCSPDAIKDEFYH
QLTVLLQKARSTDIVVLAGDLNAQVGRLGTEESRLGGRWGLVGRRTDNGDRLLQLCTDHNLFLASTNFRHSHRRCATWRP
PSASQAWTQIDHIAISYRWRGCVQDCRSFWSTYLESDHALVCANLTLLFSGRRIDHHQRIDVSKLAATSVASKYRAELAS
RLATIPPKSIDEHWLHLHDAMKMASKAACGFAKRPAYKHWVSSGSLQLMEARRSTPGDREFDHKRRLLRNEIGQSLRKDR
EAWWSERANEMEAAAASGNCRKLFQLIRATGSKKSGVSETIYEDDGMPITNISRRLGRWAEFFEGQFNWPAAPATSTSLS
CPPWPVTTDPPNEAEVRKELQLLKRYKSPGPDDLPPALFKDGGDFLAKELTVLFXKVWEQESVPTSWNESIVVPIFKKGS
RCSCNNYRGISLLSIASKLLASXILRRLFKTRERLTREEQAGFRSGRGCIDHIFTLRQMLEHRHTYRRPTIVVFLDIRAA
FDSLDRTVLWDCLLKKGVPEKFINILKALYTNTSGRVRAYNHLSPLFHSSSGVRQGCPISPFLFNFAIDDILETALMDVS
NGGVDMLPGERLLDLEYADDIVLLCDNAQGMQSALNQLAISVRRYGMCFAPSKCKVLLQDWQDSHPVLTLDGEQIEVVEK
FVYLGSYISAGGGVSDEIDARIMKARAAYANLGHLWRLRDVSLAVKGRIYNASVRAVLLYACETWPLRVEDVRRLSVFDH
RCLRRIADIQWQHHVSNAEVRHRVFGRRDDNSIGVTILKHRLRWLGHVLRMSSQRLPRRALFADSGTGWKKRRGGQCMTW
CRGMKESCKGLASVGPSRLPGWGPRDGATQWLETLSDMAQNRSQWRSCCNLLLLST
>RTETP-1_PT_pol#LINE/RTE-BovB 1-2789 via tfasty with RTE-1_TP_pol, 1 frameshift and 5 stopcodons. [Phaeodactylum tricornutum]
ALQTAEKDMEILLLGNINVDISLPGGMVxDIKITTVLSSFGLQDLTRHFWQRNHYRHRWTWRAKRNGRMVHSRNDVVMGT
DRRFIRAVKILDPPCFESDHYAIVVTMQTGLLAEQKHYLEGRRRMPKTAERGSGETKLPADVAFEQRLKCKVQVEPKKQS
VHPDWLSAMTHALLDKRVNLLKHGASHRRRKQVGRHIRKSMxRDWRSRAEEAGRQIEQLLEAKDVSGAFDVAKRWYRKST
GRPPPPCRENMEATASRYKDLYQAEPAPGAPIPTSTSRQWQVLDNAPEADKIAWHVRKLKTKKAPGTSGIRPEDMRHWLN
LFEVEQRDQQPFRLLTEIVQSAFLTGQLPQALSVAILVLLLKPGSTEIRGIGLLESVWKLILSIIDARMKDVVEFDNAIH
GFRQERGTGTAVLHNKLGMQLAVARKDTVVQLYLDLTKAYDILDRGCALAILRGYNVGKNIIRILETFWSWHKAVPRASG
YYGRVIGATRGVTQGDIVSPMIFNIVVDCILKAWRTEFRATVARVEAIFYANDGELLSESTMALQAALGxFSDYFACGGL
RMNVDKTKSLVSDPGPIQLGMSLPAFLHRTTGEGGNSRLRRAKKVTCEICGHDFRQTLLTRHMQAIHHVDLTPxAPLSRR
LFNSKEEYLVSIPKLKEPIxVVCPVDGCHATASQAHDMRKHFMLRHPTDRICIEEEGVQALPKCKHCGMHVATKTVAHHF
RTKLCEVGQKRKAARTQEWTAQTATSHQFYIDGVAVGRVNQFRHLGRQILVNDSNDGAIRYNISKARAKWHMIARVLVQE
EASPRVMGMFYKVIVQSVLLYCSETWVLTLAQYDWLNAFHVTIAWRISGLKVWYDPDTETWLKPASNMALERAGLHPLAM
YLKRRRDYILPYARNLPDFASLRDWAVTRNIVQRSFWTDDSDLSKLQEDI
>RTE-8_AMi_pol#LINE/RTE-BovB 306-3358 via tfasty with RTE-6_BF_pol, 1 frameshift. [Crocodylidae]
MTASFIGTQQDEVEKYATVELTSSAEHTQGREANNATGSRIKLTKQEITIRTWNMRTLYATGKLEKLAVEVSRYKWNLLG
LAEGQLQWENSGENRTNRRKTQVLVQRKGHERGVGFLVHKDSVKCVLECKPITSQIISIQISASPNNITVIQVYAPTSDY
TNEETEEFYSKLKETIAQTPKKDILVVQGDWNAKVGTDAHREWHNIAGKHGLGETNDRGLRLLEFAQLHNLVLANTLYPH
KPSRRVTWMSPDGTCKNQLDYILMSNRFRSSINLNKTRSFPGADVGSDHNLVMMTIKLKLKKIANKNTPRVKYDLEKLRD
PTIKADFNIKIGGKFEPLLMLTDLQNITDGFTQAIKETAEDLLGRAKKKNQPWMNNKIMEMCDARRALKAKRFDSESGSL
NYREANRNVRNEIRKVKEDWILNRCEEIQSGFENNNSKKAFESLKKITKTHQARTMAVEDKNGKLLTENNAIHKRWAEYA
KELYNYNIQTGPEVLDQLEKGGPGSTEEEDPDISREEVEEAIRSLKNGKAPGVDNIPAELLKTGDNITSMLHKICNMIWR
EKTWPTQWTKSVIIPLPKKGNLHQCTNYRTISLISHPSKVLLRIILNRLKPQVETVLAEEQAGFRAGRSTTEQIFNIQVL
CEKYRDHQKELHHNFIDFKKAFDRVWHKALWLTMKKHNISRSLITLIEELYSNASSGVLIDNNIVEWFATSVGVRQGCLL
SPCLFNLFLEQIMSDALENFTGTVSVGGRKINNLRFADDIDLIAGTSEELQELTEMLDKTAKSYGMEISAEKSKVMTTSK
ITDSNVDVKIGNEKLERVTSFKYLGATITEDLTSEKEVKTRIAIATGQLTKLKKIWTSSNITLKVKLHLLHAVVISTMLY
GCEAWTLNKKLENRIEAFEMCCFRRLLRVSYTEHRTNESVKQQISQEIGTYEPLLDRRKLQWFGHVTRRPDTLANTIMQG
AVEGKRKRGRPKKSWGTNIKDWTGLQLTECTKLAKHRAEWRRVVTASKVPQRSQRPRD
>RTE-3_BM_pol#LINE/RTE-BovB 3-1460  [Bombyx mori]
MYEVREAVRSMKSGKSEGPDGIPVEVWKILGEDGYKWLTLFFNKLLQEEVIPTEWSTSTLVPIYKNKGDVQDCGSYRGIK
LMSHSMKVWEKVIEKRLRDESEITQNQFGFMPGRGTTDAIFALRQVCEKHRDVHRNLHMVFVDLEKAYDRVPRAVLWWAL
NEKGIPGKYVRLICAMYSRARTYVRTAAGNSDEFNVAVGLHQGSALSPYLFLLVMDALTSEIQEEPPWCMLFADDIVLVG
ENGLEVQNILEKWRCKLESVGLKISRSKTEHLFCDFGGLSNFTPISLDGAPLPVCQDFRYLGSVIQSDGELDRTVRHRID
AGWMKWRQVTGTICDSHIPLPLKGKIYKTLIRPAVLYGSACWTTKVADERRLHAAEMRMLRWMCGVTRMDRIRNEYVRGS
LKVAPVTEKLRSARLGWYGHVMRRNENEVVKRVLTMNVEGFRGRGRPKKKWMDCVKDDMGRRGVSEEMVYDRRVWKEKTC
CADPR
>RTE-3_BF_pol#LINE/RTE-BovB 765-4151 (no M) [Branchiostoma floridae]
SGTPRVAFDSGKDLRNPIGQSPPALSRAAPGQLGTDPSRSACFIGCLELRVLLDKWIVCRAPDKQESKEKRRQKTQPIRI
GSWNVRTMRTGLSDDLTVIEDIRKTAAIDRELYRLNIDIVALQETRLPDSGSLKEDSYTFFWQGKGMEETREHGVGFAVR
NTLLHMIEPPTGGTERIITLRLSTHEGPVNLLCVYAPTLQATSEVKDQFYGQLDSAIKKIPVSEHIFILGDFNARVGTDQ
ESWQTVLGHHGIGKMNENGQRLLELCCYHNLCVTNTFFQNKAIHKASWRHPRSQRWHQLDLVITRRTSLNSVCNTRAYHS
ADCDTDHSLIAARIKLRPKKLHHMKKKGQPKIDVSKTMLPDRNQKFLECLEGTLNNIQPQDAEHRWETLSKTIYSAAAQS
YGKKERKNTDWFEAYISELEPVMDTKRKALVSYKQNPSSQNLQALKAARQEAQRASRRCANNYWLLLSERIQLASATGDI
RRMYEGIKQATGKPIKKSAPLKAKSGEIITDKDKQMARWVEHYLDIYSTENSVSQDALDNIEDFSVLAELDADPTIEELS
KAIDSMSNGKAPGEDNIPAEIIKSGKSVLLEPLHELLRLCWKEGKVPQSMRNSKIVTLYKNKGDRTDCNSYRGISLLSIV
GKVFAKVVLTRLQVLADRVYPESQCGFRAERSTTDMIFSVRQLQEKCREQQRPLYIAFIDLTKAFDLVSRRGLFQLLRKI
GCPPQLLDIIISFHEDMKGVVSFDGETSEPFAIRSGVKQGCVLAPTLFGIFFSLLLKSAFGHSTQGVHLHTRSDGKLFNL
ARLRAKTKVRSVLIRDMLFADDAALVAHVEDELQQLLNQFAHACSEFALTISIKKTVVMGQDVPQPPVVTIGSEVLEVTD
HFTYLGSTVTSNLSLDKEIDRRIARAAGVMTKLGTRVWNNSHLTLNTKLEVYRSCVLSTLLYGSETWTTYAKQENRLESF
HLRCLRRILGISWRDRVPNTTVLERSCSLSIHLLLCQRRLRWLGHVSRMKDGRIPKDILFGELATGKRPVGRPALRFRDV
CKRDLKLTDIDPASWEQIAADRNRWRHTVKDGLAKGQERRTEHLESRRRKRKEKPQQGNPSAFICPNCGRDCHARIGLQS
HSRRCQPP
>RTE-6_SP_pol#LINE/RTE-BovB 154-2967  [Strongylocentrotus purpuratus]
MMRQTNKNGYRPGCRPGEQEPRPPVTNQAEVGKLNTGFKSKSRIKIIDCKAATLISSFNVRSLKSKEKMGELTALAEEKR
IDILCIQEHHIYHENVDIQMKDMGKGWVLAMSSGTKNTVNSTVGGVGILMSPFAYKSLEYLEKVSSRILLAKFSGNPAPT
VITCYSPTNCSPDNEAVNFYSLLSDVIKKIPQHNMKIICGDMNAQVSSADSKGFTFGNRTNRNGQYLLNMTFECDLIACN
TRFQKAKEKLWTFTYPNKSQAQLDYILVNKKWRNSVKDCQAYNSFGPLNSDHRIVSTKMQLSLRSNKKVKAKSNLPHDWQ
LFKSDCSIKEAYTVEVNNRFEALYQDIENPTANEIYSALIEAHEGAATKYVPKRKGKKKRVPWENEKIREKRKCLKVAYN
KKNGAPTAEHAETLDKAKKDLQDAYDEEQSNYIAQKCTEIEIGAVQQQTRKVWDIVKEITGKXSTPVDQLRGKTXQERLN
QWKDHFSNLLGQPPPDNNNPVSKFTIAELKVAVTSLSNNKCPGVDGIPAEVWKSGALDQQLLEVCNRTLIHGEKPDLWSR
SIIIPVPKKGDLSTPQNYRGIALTPIAAKVFNKMLLNRIRPXLEPLLRKNQNGFXPGRSTVXHILTLRRLVEGIKAKHLT
AVLTFVDFXKAFDSINRKKMLKILXAYGIPHTIVTAVGVMYKDTTAQVRSPDGETDSFTILAGVLQGDTLAPYLFVIALD
YALRTAXEGFEDLGFTLQERKSSRYPAVMITDTDFADDIALISDDLEKAQELLXQVESAASQVGLQINSTKTEFMLRNLR
EGEICTADXTKSKQVQNFQYLGSWVISKQDLNIRKAKAWTALNKLTAIWKSNLGRKLKVRFFTVETVLLYGSEAWTLTSS
LEKQLDGCYTRLLRAALNVNWRDHMTNIELYRDITXISARLRDRRLRFSGHCWRSKS
>RTE-7_SP_pol#LINE/RTE-BovB 466-3439 via tfasty with Expander1_Cis_pol, 1 frameshift.  [Strongylocentrotus purpuratus]
MAPSPGGCYTRQHSGRGAKNLPVFSRLPSSLQVQVAEGTAYNPRKKTSENTAKKRTTEDPSRKSKTAPSTRKANKVQSRR
ASVSRPIVTMHPARQGKLPDMTKDTPGGVKVGEKMKTRGLSIAAWNVRTMKTTGHWDILMEEARRFQLDILGLSETHLTD
AETLITKDGYTFLLSSRKDNRSREGVGIMISPNILHCLLGYEAVSSRMITAKFQMKGGVMNIIQVYAPTSGHSDQESDEF
YDLLQLHIQKIPKKEKLIIMGDFNAKIGSDYKTWAPALGKFGLGVMNSRGEKLMEFCMIHRLAVCNTYFQHKDCRRATWT
SPGGLYKNQIDFILVYQDDLKSVKNSRSFCSADIGSDHNLVLANVQFQPPKARRIKSVQKSYDVGRFKNPSVAEEFQARI
GGAFEPLLLLEDTDIDELWLKFMNATNEITKQVVGIRRGKQVKHLPEHVRDACELRRKARVTKLNSPHNNHNIMKYRRLN
KKVKYEVKKWKRETLKKEVEEMEAAQARNDSHELFKKVRKLAGEKEKIQPAAKNKEGVLKTAPGDVLDCWKEHFSTHLNT
EFPRDTNTLRNIPEPPPTENQTSPFTIEEVKAAIKALKNNKATGFDNIAAETLKAGGPAMAQILLKIINTAFTQGKTPVE
WSKGLITPVHKKGDKLDPANYRAITLLSVPAKVFCRMVLSRIQEIIEEHLSEEQCGFRSSRGTTDAIFIVRQVLEKAKER
HIPIHWNFVDFVKAAFDTVWRDALWKCLLSIGVEKNLIDLIKYMYDQTKCAVIVNGKVTEWFQVKTGVRQGCLLSPSLFN
IFLEFVMADVKNLDSGVQMGGIRINNIRYADDTTLLELIYDKLQISTNKLVEVCGKWGMKINTAKCRIMTIDDEETSIDG
NPIEKVEDFVFLGSVVPSVTKDVKRRTNLASWAFGRLRNNIWTNQDISRALKVRIYNALIRPIATYGSETWTLRKTDRDK
LETFEMRCLRTIAGVHLLDKIRSVDIRKSLK
>RTE-7_Crp_pol#LINE/RTE-BovB 1-2398 via tfasty with RTE-8_AMi_pol, 5 frameshifts and 5 stopcodons. [Crocodylidae]
ICTTSDCTEEEIENSYNKLDETVAKTPEKDILIVQGDWNAIIGTGAHREWPGTAEKYELGNTNDRGLRLLEFAQLHNLVL
ANTPHPHKTSRRVTWHLPGGIYNNQINYILMSKxFRSSINPNKTRTFPGADIGSDHNxYDVSQTKLKITSKKPPRVGYNL
KKLKDPAVKADFEVKIGGRFEPLLMLTDLQNITDDFTQALSETAEELGRAKKKNQPWMNDKIMEMCDARRELKAKRFQYL
QHRDANKKVRNxIRKVKENWILDRCEEIQRGSEHNNSKKVFENPKKITKTYQARTTAIEDKNGDLLTENSAIHKRWAEYV
KELYNHNIKTDPEVITQLEKGGSGTVEEDKSLDITREEVEEAIRSMKNGKATGLDNIPAELLKTGNKTIDILYKICNMIW
KRKTWPMQWTKSIIIPIPKKGNLHQCTNYHTISLISHPSKVLLRIILNRLKPQIETVLAEEQAGFRSGRSTTEQIFNLRI
MCKKYHDHQKELHHNFIDFKKAFDRVWRKALWLTMKKHNISPTLISLIEELYNNTSSGVLLDNNIVEWFATSVGVCQGCL
LSPCLFNLYLEQIMSDALENFTGTVSVGGxEINNLHFADDIDLIAGTAKELKEITERLHKATKRYGMEISAEKSKVMITS
ANSNDDASVKIGNEKLEKVTHFKYLGATITEDATSEKEVKTRIAIAIGQLAKLKKIWTSSNITMKTKLHLLYAVVISTTL
YGCETWTLTRALEKRIETFEMWCFRRLLRIPYTAHRTNESVKDQIRQEVSKYEPLLEIIEERCSGLDMxQEGPAPLPTP
>WaldoAg2_pol#LINE/R1 gi|28569864|dbj|BAC57906.1| reverse transcriptase [Anopheles genus]
MEIVQLNLNHCEEVQDMLGQLLIEEKGDVAMLSEPYRCPSGVNNWVSDSTGTAAIWASGRFPIQQIISRHGEGYVIAVIN
KITFCSCYAPPRWDLEKFEEMLKRISDEVYDVNPIIISGDFNAWATEWGSKSTNARGNAVLEHFSRLNLVLVNVGFCPTF
VRNSRTSIIDLTFCSPALASSMNWRVSNAYTLSDHRVIRYTAGSKCHRVAQGSGFPAWKTQCFNEELFIEALRFGDFSNT
SSALKLASAIANACDTSLPRRKGGPYPRRRAYWWTTEIAQCRSHCIEARRKMNRAKSSEQREDLRRLYILARSNLKRKIK
ASKRRCFLALCDEVENNPFGAYRTLMGKMVGQDLPRERNPTALKTIIEQLFPNHEPQTPRDISRNPDVEPVSISADEIQK
AADHLKLGKAPGPDGIPIEAIKAAIKAYLEAFLSVFQNCFDTGFFPIPWKRQKLVLLPKPGKPPDDASALRPLALIDNFA
KILEILILNRLVVYTEGEHGLSDRQFGFRKGRSTGEAIAAVLKKRRSALLKKRTGNRYCAIVTIDVKNAFNSANWEAIHA
ALSKMMIPPYLCRLLRSYLDHRVFLYDTALGIKKMSLTAGVPQGSILGPTLWNVMYNGVLTLGLPPGPEVIGFADDIALT
VLGESIEEIELLTSDSVSRIESWMQQMRLEIAHKKTEFLIISSHKTVQSGSIRVGDERIESIRHLKYLGVIIDDRLSFRK
HVEYACNNVFKAAISLIQIMPNIGGPKSSWRRLLADVAFSRLRYNAAIWAHVLVLKENRQLANRVHRLLAMRVVRAYKTI
SHVAVCVIASMVPICLILAEDSECCSFSGVSNAGLSRSSAKQLSMRKWQSEWDCSTKGRTTHALIPNIAAWTSRKHGEVN
FYMTQFLSDHGCFRSYLHKYRHASSPDCPACVSIVESTEHVLFHCPRFAEERHEITVKCGTTINGTNLTELMLKNAGTWE
VIANGMRSILLKL
>RTAg4_pol#LINE/R1 3318-6614 gi|28569858|dbj|BAC57902.1| reverse transcriptase [Anopheles gambiae]
MTPQLRVMQVNLGRGERAQDIALQTAQEKRVDVLLLLELYRPPANNGRWAFDCSKKVAIVATGSLPLQRIWCSNTPGLVA
AEIGGTTFLSCYAPPRQPTDEFERFIEAVQLETLTHSQVVIAGDFNAWHVEWGSERNSEKGEELLSAIQQLDLVVLNQGT
TSTFDGNGAATASIVDVAFATPTIAQPGTWNVCGDYSYSDHRYITYTVGTIVPVVNEPSSPRMRHQGRIRHADRRYKATQ
FSQRAFRARFSERAVSHERMVEIMLATCDKTMQRVTTSHSDPHRDLFWWTPLLRLLRENCDRARDRMRQTSDLQERSIAA
AEHRTARAELGKAIKASKRNSFQELIDIAEENVFGAGYLVVLSHLRGGRTPPETERDRLEHIVSDLFPQHPPLVWPEAAD
IEGEEQPGAVADVSDDELKLIARRMANKKAPGLDGIPNAAVKAAILEHTGVFTALYQDCLVNGTFPAAWKRQRLVLIPKP
GKPSGVSCSYRPLCMLDALGKVLERLILNRLHEFLEDPESPRLSDRQYGFRRGCSTIGLIQRVVEAGQRAMSFGRANRRD
KRFLLVAALDVRNAFNTASWQAIATALRTKRVPAGLQRIIHSYFQDRELVYETSEGPVVRSVTAGVPQGSILGPTLWNTM
YDGVLDIALPPDAEILGYADDLVLLVPGTTPDNVKAAAEEAIISVMEWMARHHLELAPAKTEMVVISSTKAPTRITVRVG
DVDVTSSRSIRYLGVTLQDKLSWLPHVKEVTERAGKIADATSRLLRNHSEPRASKAKLLASVSESVMRYAAPVWSKELQK
REPGRLLERVQRKMALRVARAFRTVRYETATLLAGLTPICLLLDEDARVYQRLSAVNRTDTRANIRKQERQATIEQWQQQ
WDAEADTSRHTRWAHRVLPNIGSWQSRKHGDVSFHLCQVLSGHGFFRDYLCRNGFTSSPDCQRCSGVPETAEHAMFECPR
FAEVRQQLLGEGITDPVRPENLQQHLLRDAESWSRICEAAKRITASLQQAWDDERAALAAHGNEQHFEEVADLEARRAEI
RRARNDRRNASRRAARARQRELQRAGRPPSPPPSPRTAARRADLRLRQARFRARRRQAI
>LIN2_SM_orf1#LINE/R2 7-2222 via tfasty with LIN1_SM_gag, 1 frameshift. [Schmidtea mediterranea]
MKIEIGEFAALFQRFFEQLNAKSKQEEEFRNESVPGSRVPSEDMPVFQINERFHALERSNELLNGKMDSIVNTLNYLISG
LNGNFDNNNKLNCICKTNHVKEPLSIVKTNLVSELPSALLVQNKVPCLKLSEEDLIRKIPTKIVPSKKVSKKTIEHTSRV
NFSLFVRVLDSNERQQFFKLFPNLLALLKSKESEKKSEVLNIELTKISKKDNPLNIAGFKNFFFRNNNICVTIDFYNSSK
VKSKITKNLKIKTSLINSKIVKNYNTNKFIPASLSIKKFLFVLSDKLAETTNISNVTVREEQINKIITLLKIKNSLPDYL
VKSQIKYKDGDFLMLDLLNSCEIEGELGQKITELSRSQIKELFNSFPEIQELFFIEKKGIDENPEKLINLINKFKIEKTF
PQQISFVGGKFVKIDKLNDSQFPQVESESDIMFNLGLFSLFGLSEYDNILNSLLCQPKSPEKLVDIIFHLNYLNLKGNFD
TSTNGTYENYVQNYIVNCLLMHSILDLETCAFLNLDNIELWAPKLIELIPSSSHYSSSCKEKLLKLKQWKLSGEIDRIHN
IICPETIIEINNFLGVIDQSYTTKSDQLKFLTSLGEKINNIEIDNDVDDLVKAKRMLYFIIRDKKRFLNKDNFNYRIPFN
CRKICTLKMSDFITKLIQSNELFEEREAVVDNNIDVSPNENLNILIVEPVNPTPDTVIVGQMDTFPTDIDETEPVTIDKP
LKKITSKQAVKPKAQKSK
>LIN4_SM_pol#LINE/R2 307-1866 [Schmidtea mediterranea]
MAPDQTTELKTAETAPDITFNKRDKHIFKEINRIIEHKTKQTTDNLTSDFLKQVDEQQKIIIETQQMIRDLNRKLDYSSP
RRIMTNDTKFTTSHSENPNPPTTPQITDPHSKNSKNISQIYPGFNVNDLEFTPTPAQLNPCYDIDDVLFTPTPNQDMNSP
IKCHQPSLNNSIETLSEEDDDIDIHKEKTPKNRNRIVDLDAQETTPLETYSPLSHTIDSSQSLFSQPKKKLTQSIVMQYP
EMFSANEAPDLNGHFELYFALEPNVDRHDVANPNNAMTSQPPIISTTTVEPTPSEPIKNILLSNEQLITPNTRSPFLLRN
RDPIFKLGSEGYLKCVVSNCKTGRKIGPLMLDKQHNHMHSYHQKSIKPTDTFECLICNRNKIKPTNISLKNIENHLTEVH
KDREFPGTKEQYNDKKKILTFDMNEEGTLVCAYLGKKAQCDIYLTFNTDLNEINKHIISKHKKKTFDHENSVRCYCGMTI
DIHHTNSHFISHKNNNTTIEIENDPPTHIPATNADIGTD
>LIN3_SM_gag#LINE/R2 71-2512 [Schmidtea mediterranea]
MDLLKSQIVSSEAIMDFISKTSLSTEDISDLMSKKNEKNLDGYKHVPSTFEDSISRTNEFILQEIHRLDVSFCNIVNKLD
LVISFLTQNLNFNANSKLNLSNKKVNVEDSNLNLNNKLEIAKTLSLIGNAGLNLNNDKVTLENDLLISDIPVQVTDCEIN
NVIGNKSNLGQVYLDNVKLQHNEISNLQLVSKTSPNLNTYKKLENSSNKSTKNKVFSSKISNITSNNELKNNSKLFKALC
KKEQQALFKKFPNLIKLIKIKESTDKSKNLNKELSFITKLINPLEIAGFEFFYRNNNICVCIDPFNINKPAVPISNKHTR
GISIIKANIVTTCKKGFKFVSAPLMIRKFLFALSKKLAETATIKNEKHRGVQINNILKLLKQQNVLPDFLTKSQIKYCDG
DFVMLDLFNNHISDAEIKSINNSELTRSQFHGLLISFPELHELCFVGNMSSFPDEISFVGGKFLILNKINTSENPNFENS
SDIMFNLGLLNFLEMSKDDTEFRTLLNKPNTSEKVIDIIFYLNYLNLKNNLNYKTNGTYGDYALNYIRNCLLMYSIVDIE
STSSLDPDHNETLISEMIDMIPSLSYYNSSCRERLLRLRQWKLSGEIDRIHNIISPPTINSVNSFFDLLDKTFTEKSNQI
QLLCEISNKINNWNPDSSNVDEIKAKRLIYFAIRDKKKFLSSKKQSYRIHQTCRKICTSKMSGFISQIIDSLVLFIQEKA
DVNQVEQFTTINVQTSTESTAPVVQTSLCFINESKNLIVETPIVNIDNKVTETTNNLTTDIDEEPSHTLTIKNIDVKKMT
TRKDVKLLKTTSK
>R1B_DAn_gag#LINE/R1 562-1938 [Drosophila ananassae]
MPRGRGGRSRSGSRSSVASVASVASAASVAVDVRQARKSRERSISFDMESEVEPKRLDQRSSPKKNNGAEMAFSCPGGLN
GAGLEAHGANTVAPAAATIAAIIAEPVAVAPAAVAPVAVLEHATARAAVAAGQGAVLAELSATQRAVRGALLSGNLQTVS
ASMSRYDELVVALMLRVAELETRVAMPPPMTSTLHHNAVGQAAVPVAPVPVPRTKVRETWSCVVKGTDPELSSSQIAEKV
RKEVAPALGVRVHEVRELKRGGAIIRTPSASEASKVAASRKFAEVGLSVERNQAVKPRLTVFDVDTALSPDVFMEELYAN
NLKDEMTVADFKKSVHFASKPWTAADGGTTNVTLEVSEKALAALDTGRVYIKWFSFRCRSQVRTYACHRCVGFDHKVQEC
RLKVSVCRQCGQGGHVAAKCTNPVDCRNCRFKGLPSGHNMLSAACPVYSAVLARVNARH
>R1_DPe_pol#LINE/R1 1843-4956 R1_DPs_pol near-identical [Drosophila persimilis]
MFSFIQANCGRGRAAVMELGAIMRSSGRQFALVQEPYVDGAGRITGLPSGMRVFQDRRGKAAIIVDEPDAICMPMETLTT
DFGVCVRVTGRFGSIFLCSVYCQFDTDLAPYLRYLDAVLLLGSRTPVIFGLDANAVSPAWFSKLSEHNRGQANYARGELL
SEWITEMRAGVLNEASRVFTFDNRRGQSDIDVTIVNQAATMWATYDWEVKEWDTSDHNMIHVVVTTDPNDTVEPIAPVPS
WKLSNARWRLFEEEVVREIAELPEDIAESPLDNQVSALRSVVHSVCDRVLGRSTPRAARKVVWWTAELHSKRREVRRLRR
RLQDARRHETDAAEELVLALRISSAQYKKLILRSKEDNWRRFVGENRDDPWGHVYRICRGRKKSTEIGCLRTDGRLVATW
RDCAGVLLRNFFPVAETNAHIAIPIEAPPALEAFEVDACVARLKSRRSPGMDGITGAICKALWRAIPQHMTAMYSRCLET
GYFPTEWKHPRVVPLLKGPDKDRTDPTSYRGICLLPVLGKVLEGIMVNRLKDTIPDGCRWQFGFRQGRCVEDAWKHVVST
VSASRSKYVLGVFVDFKGAFDNVEWNAALRRLLELGCREASLWRSFFSGRSASIVSRHGVATVPVTRGCPQGSISGPFIW
NILMDVLLQRLEPLGALSAYADDLLLLIEGNARSELEQKGGELMSIVGAWGVEVGVAVSTSKTAIMLLKGILRRPPVVRF
AGASLPYKRKYRYLGITVGERLSFLPHITGLRDKLTGVVGALSRVLRVDWGLSPRAKRTIYAGLMVPCALFGASVWSVVT
TTQVVARRHLLACQRIVLIGCLPVCRTVSTMALQVLAGAPPFDLVARRLAISFKLKRDYPLEESDWLYGEDLANLSWKQK
MARLDEDLLCEWQRRWDDGDSPGRVTHRFIPNAGFVYSERRFGFTLRAGFLLTGHGSLNAFLHGRSLSDTPACLCGAERE
DWQHFLCACPLYTDLRDLDGLGVQYTDGDWTFSDVTASQERMRTLDRFAGLAFSRRQQLLNAQAAHGLGGFPIQAGRG
>R1-12_DWi_gag#LINE/R1 275-1852  [Drosophila willistoni]
MMKRTPPPQRQQVARPLAPASSVPVATPDAALVVDAHEATPKRLRSPSVGAEGTDGEAANNGACIKKSKVGQVRPTCNEL
EEMGHILASIATHYSRDKDASGKINRSITNEFREKVARLRELHAAVIGLLQDKGPISQLPVACATCSMSPPKRVSRQQQT
ELVNSPSKRDXPCQTSPXDDSGRHQARPHQQKTQQKNRQHPQKSSTRLQTAQYQQGQQQLHQQSQSSQXGSQQQAMQXQQ
LHPXDVZQPRAQQNXXSSQEWVKVGPSRSSRKPXAKISGKLQKSRPEALLIQANEGLSYSQVLERVTRRTDGXLDHVREH
VMRVRRTAKDGLLLELRKCTADTTQSLKEAISQVLGEEAGVKALTRHKAVAIHGMDEKATPQELVAKLADQAKVEATSXR
VRSFRSSFRNTMSAVVCAPEAVALKLLEVGRVRIGWDSCRIKELEAQPARCFRCLCVGHIAANCPSDTDRSNCCFRCGNP
GHKSADCSAAVKCFLCAEMGLSPLNHIAGSRACPSSGAQRMQKDAK
>R1_Px_pol#LINE/R1 named SART1Px1 by Kojima and Fugiwara  gi|22004007|dbj|BAC06454.1| reverse transcriptase (22004001, 22004007, and 22004010 over 98% identical, 22004017, 22004020 and 22004023 close) [Papilio xuthus]
MALHLLQANVNHCARAQDLLIQSMAEWSTQIAVVSEPYYVPNRDDWVGDEDSLVALIVPRSARSPSIDGVQKGRGYVGAT
IGGTLVVGVYCAPSMNLVEFEDLLERVGTLVGRNLPHSVLVMGDFNAKSSAWGSTSTNARGAVLEEWALTSGLCLLNRGS
RPTCVRTQGSSIVDLTFACPATARRMYGWEVVEGVETLSDHRYIRFXISTTPTVPAHQGPESLQRDTPRWVVKRLNTDLL
IEAAQVETWSPADSSPDLANRAAELRASMTRVCDASMPRQGPPPRKRQVYWWSADIAAMRVACVAARRQYQRQRRRRQRD
EIAEASLHDIYKAAKHALSRAICEAKDRAREELIETLNLDPWGCPYRMVRGKLRTRASPLTQSLQPQLVRGVVGSLFPNG
VAHTPPFRIPTIRNENPDSVDEEDIPPITPGEFGAGIHRLRAKRTAPGPDGIPGRAWVLAADVYEERVVGLMSDCLAHGR
FPLLWKNGNLVLLKKEGRPADSPAAYRPIILLDEVAKLFERIIANRLIKHMTTVGPDLDEKQFGFRAGRSTIHTIMRVKK
ITEEAIAQDNVVLAVSLDIANAFNTLPWSCIIEALRYHQVPKYLRRIITDYLSTRSVSYRSRDEWCRHEVTCGVPQGSVL
GPLLWNVGYDWVLRGANIQGVDVTCYADDTLVTARGSTYRDCAILATVGVAQVVGRIRALGLEVALQKSEALYFHGPRSR
PPPGAHIVVGGVNINIQSHIRYLGLMLDGRWTFEGHFRQLGPKLMRTAAALGSLLPNVGGPKAACRRLFTGVVQSMALYG
APVWSGALNSRTTEILHRPQRTMAIRMIRGYRTVSYDAACTLAGSLPWVLEAEILAAIHTWRELKITTDGAPPLRVEVEA
FRKERREEAVSKWQRRLRQTRAGARTIGAICPVFMAWLRRRHGAVTFRLAQVLSGHGCFGSYLRRIGREPSAVCHHCDDC
PEDTAQHTLAECPAWTEQRRDLVAAVGDDLSLPATVRSMVESDGAWRAVQTYCEAVMTIKEEAERAREATSQDAIRSRRT
GGRRRAYARTIPP
>R1A_NVi_pol#LINE/R1 2631-5801  [Nasonia vitripennis]
MAHSREIRVLQVNAQRGYSVMCDLGERLLNESIDVCLIQEPHCVNGRVVGLPYGTRVFVSKSGRAALVVAGDTIECLSLD
DWDCENGVCVWTKGVHGEVYMVSVYCRFGEDIEPYLLSLDRLLERIAGHECILGMDANASSGLWHSKDSTSSREREARGH
ALERWILANEWGLNILNEPSEHYTFSGPRGQSDIDVTLSNIRRHDCKLEWEVRCEWGISDHNPILIRLWHGVNEASPAAV
PPPLSWRSWKHGYGRGLYMDVLNDRADELGLTSFSDLDSSQMALKMTEWLTSANDECMKRAKVMRREWVVWWTDELEYMK
RDVQRCRKKYQRARCRQDENVADLKSEYRKCEREYKCSMREVKERDWREAVGRDANDDPWGRVYRICRGKNKKSDLAGLK
TPDGCTKTWMESASVLMKDFYPRDEGTNVERMPEMLNVTNDGRGEEEYEWSEVNLAVDKLRQRKAPGLDGITSSVIKYAW
LAIPMYMKCMYDRCLKDGNFPAIWKKARVVVLLKGGDRDKKDPGSYRNISLLSGLGKPLERLMIERMMERMNGKWNDCQY
GFREGRSCEDAWMRFKDSVNSVNSKYAVGILVDFKGAFNNLRWSVILRYLLECGCDEHEMRLWMSYFNERYASLSSEMNE
VMVKEERGCPQGSISGPYMWNLCMNGLLDRLSAMNERIVAYADDLMIVANGNSRMEMERMADECMRIVYEWGREVGVSVS
EKKTVCIMLKGKLNVDGRKMRVTVAEGTLSSIGYVKSARYLGVCMGERMSFAEHIRGLRTKVMGAIGGLRRVMRKEWGVK
KKTACTWTKGLLLAGVMYGSSVWYESMKYKTMRESMNSIQRCAMYACLRVCRTVSTEAMQVLLGWLPWDLECVKRANAFK
ARRGIGMNESDLVTDAEIVEKGVRDACKLMKERVHEIWQRRWSESTKGRVTHEWMCDVNFACERMWFEPSLRVGYILTGH
GTLNAWLYDRGLADSAACPCGAPREDWMHVLTRCDMYESFRRLDEMGVLEDANGRMDVSGVLSARSQYECLCTFIERAYR
MRASVISRMNEEERPNE
>R1A_NVi_gag#LINE/R1 1166-2626  [Nasonia vitripennis]
MGAKSRRKKKRASSDAASSSRSDPSPEARIRAADEAGSESESHAHARCRSPIANGKRLWAKTPTNASVNASDSQSECEEM
EVVPVSAKRGLPASESAVGPRAKKRQQTLLSPRVSVERMSAHVNEEPQVNASVNKNVQTCVNDSERVGDMARIGDKLREF
ILNDANKVSKHASKIVLGCVSEYEQFLMRLQCENAELRGRLHESEKLCASVVKECARAPMAPYTTVAAARGVPEQRATTK
PVSVAKPSYALVLKGNENEPNTAILNRLKSASGCENVRVKNVREARNGGVIVETLSEKERECLKRAVSNVRVNLSANEPR
KLNPRVIVYDVPNEMTEERFLSSLYEKNLSGVIERENVGREVRVASRQSKPGVSVGNVILDVAGRIRDRLLEEKRVYIEW
NAYRVSKYENVPRCYGCFSYGHLLRECKGERLCYRCGKPGHRGAGCREREDCGNCRARGLSATHSALSPECPEYKWRLER
LRGRISS
>Perere-9_pol#LINE/R2 361-3792 The 2010 added R2Sm-A is near-identical to the2005 entry Perere-9. Perhaps the name Perere-9 was meant to change to R2Sm-A [Schistosoma mansoni]
MPVSTGAETDITSSLPIPASSIVSPNYTLPDSSSTCLICFAIFPTHNILLSHATAIHHISCPPTPVQDGSQQMSCVLCAA
AFSSNRGLTQHIRHRHISEYNELIRQRIAVQPTSRIWSPFDDASLLSIANHEAHRFPTKNDLCQHISTILTRRTAEAVKR
RLLHLQWSRSPTAITTSSNNHTITDIPNTEARYIFPVDLDEHPPLSDATTPNASTHPLPELLVILTPLPSPTRLQNISES
QTSHESNKNSMHTPPTYACDPDETLGATPSSTIPSCFHSYQDPLAEQRGKLLRASASLLQSSCTRIRSSSLLAFLQNEST
LMDEEHVSTFLNSHAEFVFPRTWTPSRPKHPSHAPANVSRKKRRKIEYAHIQRLFHHRPKDASNTVLDGRWRNPYVANHS
MIPDFDCFWTTVFTKTNSPDSREITPIIPMTPSLIDPILPSDVTWALKEMHGTAGGIDRLTSYDLMRFGKNGLAGYLNML
LALAYLPTNLSTARVTFVPKSSSPVSPEDFRPISVAPVATRCLHKILAKRWMPLFPQERLQFAFLNRDGCFEAVNLLHSV
IRHVHTRHTGASFALLDISRAFDTVSHDSIIRAAKRYGAPELLCRYLNNYYRRSTSCVNRTELHPTCGVKQGDPLSPLLF
IMVLDEVLEGLDPMTHLTVDGESLNYIAYADDLVVFAPNAELLQRKLDRISILLHEAGWSVNPEKSRTLDLISGGHSKIT
ALSQTEFTIAGMRIPPLSAADTFDYLGIKFNFKGRCPVAHIDLLNNYLTEISCAPLKPQQRMKILKDNLLPRLLYPLTLG
IVHLKTLKSMDRNIHTAIRKWLRLPSDTPLAYFHSPVAAGGLGILHLSSSVPFHRRKRLETLLSSPNRLLHKLPTSPTLA
SYSHLSQLPVRIGHETVTSREEASNSWVRRLHSSCDGKGLLLAPLSTESHAWLRYPQSIFPSVYINAVKLRGGLLSTKVR
RSRGGRVTNGLNCRGGCAHHETIHHILQHCALTHDIRCKRHNELCNLVAKKLRRQKIHFLQEPCIPLEKTYCKPDFIIIR
DSIAYVLDVTVSDDGNTHASRLLKISKYGNERTVASIKRFLTSSGYIITSVRQTPVVLTFRGILDRASSQSLRRLCFSSR
DLGDLCLSAIQGSIKIYNTYMRGT
>HERODr_pol#LINE/R2-Hero 13-3261 Previously represented by HERO_Dr_pol, gi|34392545|dbj|BAC82600.1 [Danio rerio]
MTTHRAEVTTSGKTQEEPGPEATHSAQSLLVSPTPAAGRSPATQSCPQVTAAHNSPQSPQSQQVAVTRSDCVPLAQPRIQ
WPQSSKKAEWLQFDKDVNQILEVTGKGGVDQRLSTMTTLIVNIAAERFGTVTPKPTPSTYTPSHRVKEIKRLRKELKLLK
RQYKAAGEVERAGLEDLRGILRKQLVNLCRAEYHRKRRRERARKRAAFLANPFKLTKQLLGQKRTGKLTCSKEAINNHLK
ATYSDPNREQPLGPCGALLTPPEPTSEFNMKEPCRSEVEEVVRRARSSSAPGPSGVPYKVYKNCPKLLHRLWKALKVIWR
RGKIAQPWRYAEGVYIPKEEKSENIDQFRVISLLSVESKIFFSIVAKRLSNFLLSNKYIDTSMQKGGIPGVPGCLEHTGV
VTQLIREAREGRGDLAVLWLDLTNAYGSIPHKLVEVALEKHHVPQKVKDLIIDYYSKFSLRVSSGQLTSDWHQLEVGIIT
GCTISVTLFALAMNMMVKAAETECRGPLSKSGVRQPPIRAFMDDLTVTTTSVPGARWILQGLERLVAWARMSFKPAKSRS
LVLRKGKVRDEFRFRLGQHQIPSVTERPVKSLGKAFNCSLNDRDSIRETSTAMEAWLKAVDKSGLPGRFKAWVYQHGILP
RLLWPLLIYEVPMTVVEGFEQKVSSYLRRWLGLPRSLSNIALYGNTNKLKLPFGSVREEFIVARTREHLQYSGSRDAKVS
GAGIVIRTGRKWRAAEAVEQAETRLKHKAILGAVAQGRAGLGSLAATRYDSASGRERQRLVQEEVRASVEEERTSRAVAM
RQQGAWMKWEQAMERNVTWKDIWTWNPLRIRFLIQGVYDVLPSPSNLYIWGRVETPACPLCSKPGTLEHILSSCSKALGE
GRYRWRHDQVLKSIAEAISKGIKDSRYRQATAKVIQFIKEGQRPERTAKNCSAGLLSTARDWVMTVDLERQLKIPPHITQ
STLRPDIILVSEATKQLILLELTVPWEERMEEAQERKRGKYQELVEQCRANGWRTRCMPVEVGSRGFASYTLSKAYGTLG
ITGTNRRRALSNNVEAAEKASRWLWLKRGEQWGQxHATWTQAG
>RandI-3#LINE/R2-Dualen 98-11113 [Chlamydomonas]
MATMLVLITYVMLILGVLVRTSHWPEEVRPFHTPEVLQALAGLLARSWTPSLTSGGPEEVATTAMHRMPPQKYAPFCIPA
TLVATNPAICSAGSRLSSGSYGSQQMNVRSAAPTPTQQSQQPLPGTRKQRLCNETNTTLPVSLRPPAPDVQNLDLSRDRR
RPATTSPRAANSCTSRTLKSPTLQHYVSTSLQPPASDGQNSDMSRGPATTSPMAANPFSPKTLKSPASQHYSTAERPPDD
TPHDPGPGSSARGPRAPAALLCHTRTASPALQLWCQTMGPYPIVQLQMHNDTDPLIATVSYISAHITSALCWTAVGTFHG
SCALLRHTIASLRTLLTHTAAYMTTCTGTLIAHSWRTAASITLWPPALTLVAASAARLAWSARTMLSHPSAGNLTTLTFT
LLATLTLSQPLLLLISTHQHISTTLTLLTTTAAIYATLRKTHGAPLILLGLPVYATCRAVAVKPAYTMRTLLTILLLLTN
IQATAEAPELTPAAAPLAMQLLTRIPGSPTLNTGVVGLTYLLSQTHIHPQPACLALTTNLATYRYLMDVTTPWSHTLGSP
IPPPIQLRGGNPIEHTPATNRVAAATESGRKPERIQWPRQIQHTFFREQQQLNFCTVHAINNMLGKPWLLATDVLAFCQV
SHTAMADTPALYTLWGHHFRYHGLFHEAAINHYLRHRPPAVDHTGARLLLRTVAKTLTPGHTQDHIISLLPDCSKGLGLM
VHDGRHAYAIRKENDTWYLVDSLAHIGRKPMTQELWAATKGDLFCLHPLHPDMPPDPLTYPTIPGLPEPPPPPTPTTQPR
PRKGTVQLTLNTTMTRTLNRAPLNPNPENSTTSNRAQTRPQTQTTLANLVARSQTHAEPQGTQLTPPEDPQEPPPRTHAP
THEHGRPPTPPSAARPTRRLRRNDQISPHSPTRHRTQQDATTENQQPQAPPPANDPVPTPQPRPTWAQVLTNNASAVGTA
TLHVLTRLSPAPRHRPDTPTSAARPTQRPRQELPGSPTTHTATAPPDPPPTNPTATPPVTEQAAEPAASWLHVVTHNVRG
LSTNLLSTVCHLREWDADIVILTETKLGPRTRWLKDTLRHEKLSYRTFTSTKPGTAQYKRRSASVLMAISKRYHSGSNIH
TATIPPHLLGHLAHCTIRTPHSIPLHILGVYCPEDMPTRRRIYTYCTSTLKAAAAAGEHVLIGGDFNAVLTAADRTGPLD
DADRHHARFVSSHRLHRITEPNGTTSMTYYQTRDGHPQAISRIDDILICQHTSNALVAAATEPGGNTPTLKVQPSGGLFD
HSSVHIHLPTFPMRLWTAPTGNRTGNTTQPPTGPWPQVVLPISTSTLEAVRTKIEHTLASPIANLAAALQPASTAIRDHL
DRYTTGATNATELDTQLKGGPTVQAPNLDALAGQLHDILKDGLNILVDMCPKKPPRTGAFAPRRISKKIRRAHEELRQLR
AAIADNDTLHTPGNAATGAPTTPQPSPCPPTEGEPTTPTPTRGPRPPPPNQTVSDLINKIKHVGSALRQTLKKLTQSEVQ
KSRARFQHKLATRAKQAHKDIFSNQEQARGIPAVLHPHTKAHCTDKASILEAIHTYFQDQGATITGPRTGNYKPEDRHPN
TRYPFDPSNRTAPDTFKLHSTCSPTSHALLPSISDSANFDTCIDHLSRNKSPGPDGIPNELLRALPTPLRTALHNLLILM
WVRAHTPASWTASETVLLPKPGDPLLLKNYRPIAQANTTYKLWTSLITVAISDISHDLDLFSETQEGFLRYRNTERQTLN
LVHALEDAGLTNQDIYVMYADFSSAFNTISHDRLLEIMWDLGMPHDLLRVVQNLYANARTYIRTEHGLTSPVHIERGTVQ
GDTLSPVLFLMFIEPLIWWLHVGGRGYSYGCLPNHLNNRFHCSSAAYTDDLAVLTNTLSDLRIQCDKIHRYSAWAGLQVN
HAKCRVTGILHRRAQQDKGLNGPTCNRTLKSMLENKIHIGDKPVPYLPATEPFKYLGVQITMNLHWGPQFAYLCDAIKEK
SANLQTSLASPEQCLRIIKSCIQSMAAYSFAVMPYAENDIRTLDAMIARLAKKCYRLTPGFPTRATLAPADMSGLGVGSL
LPLYAQKATRALTLALNDPGRLGMVTHALLELQSRIAGTAAIHKLRRESHFYTTLKQLSIMREYDITLWDHGAPYAGPIN
TILQAVNRNPRPIPHHLVHTLAQAGLDLRALISTERTKEGLTCLIPSDSLFLRLPRNQCKRQHRIALNRLSLCLSAEGAP
TRAAPYDQPETYNCHLPLPQQYRALPATPAFAALLPQSATATGAPQTTLMAHRQHMTTLHPEPNSTQPHAPTAFNATAPP
RAAQPRGVPTRQAALTRHLRPVETACTLATIPAPPTQAGTPDPNQTATPIALAQGTAPTLPPADTPATQPQTQTNTNKRK
RINLQVKKVKGPSASKRLERRIEAEPRHDPLGTRGQRDHTGRHGFVLDHGEPVAGDTVPADFVMWAPRFYSMLQKDMSGK
THIPRLGIPPGKQKFPTTLPRPRYTRQIPTHLTTPYFLNDGEPHNPVQTYLRDHNATKAPLCAYDTPARWAQAGDFIIEP
EPPRWPTITGADPANPDDPREADPDPNGMSRKAYMAERALLRQRTQHQDGRPRLITRWMGIRAQVMTGGLQWPKNTSDAT
RAASQLIFSLYYDLESVSHVHAGPIHKLIAAPARNERPQTALYYEVAWKPTTIVRGAAAAYTIMKYTGTPHAHLAYGQSC
SRYFVHMHWNVTSEPASKCPTLQGWRAAHAAHLQRLSKPPSEPTPPPPRDSHLSPAQRQGRWTPPDVEGAARRRTTRQNT
QINTKPCNPYHDIYPTGAYTIQITDTYTDAQTLAHIHGPDGRHISSITMGTLHTLHTRYKHALASNPTETASLRSPGGFP
EDVAKLLIRTRVDEKGKPCKTAPALERSLPTCLKTTLLDALAAAHPDETNPALMERFASPLNCSNRVCQYWSAQPADALF
GATTDVLSAPFTGLSIAHPGPNPAAYTKALAWAVATTELLEGQMDPAITLMVIPHNHKSPHTRLFSSPHVTHIAYLPPDT
PATNLDEGLGDLSPAITLRHGLDLLLVANTTGVQAFTARNNLANLQAALTDIGAQPPRPTRTTAAVARWPRRITLPRDRH
QPTSRPYSHRAQTRARQATHRTPPTPPAPPTCTVSPPIQAELNALRDCFPAISRPLYDAATVIWTDGSCIKIAVGDDGAE
MNQLGACAWTATTGEPLYVEPGGLNSTNTIQRAELSAILAALRHYRPRAQLLGLTKLVIASDSLVSLYLIRRAISDPMKL
TLSKHKNLLSDIVKELNECADELLPVVFLKVRSHTGLAGNDEADKGAALVAQRDAGAMSQAVHLPPDEPWANIWWPKRNS
DNFYISDLNRGVLSSLPPRAQYGFTDSTTVLDNWAAAADGACPQSSNLTLASPARHPWLVKQILYARYGYLFNATLKRRY
GLGGNGLCPLCEAPDSGGHILGGCSQRQMKGAYINRHNIAVQRVAKCISKGSYGGGYMVMDAGPLADLPEYASGQRPPAW
LFRNGTPPEVIARLRPDILFIPALDTTTTQREDYRPPRNRSRTPIYILEIGYSSDSQHLHKREEKSQQHQELKQLLEEAG
WTVHYSPAECIALGVTGTIPANLVPLLTTLGVSPKAAKTCGHKLHHHAVNSAGGIIKARRIMEYGHTRTPG
>R2I-1_PI#LINE/R2-NeSL 379-5490  [Phytophthora infestans]
MLADPAALAAGLARAPPPPSAPQDPSPAFPAGPAGQNPRAAAPARVEVHTVVAPPGRAGGMLPDPGLVEEPIQATYAHDA
AQFECALCPYVAESMAVLVQHRRSAHRGTRFKDIFTSGCQCSLVFYARIVAASHAVACARRNQRAVPPAPTPVAPTRPEA
TPQPTGYLAAAMTAAAAAASSDTVVAAATNMQSAVPAAAKTTGLQLVPPELEPALPQRASCHAGKRRRLNADEAVTPCTP
TARVSPQTEVAMAPHDAPQDDTVLQREAAEPQPDPAATPGAQVQRVEDTTAAQDDTVQQDHDADTAQVSPPRRTPTRWGP
RPSSTQEPSPMTGEPAATLAARRPLTPAATGTRATRWGPCHRAIGAAAIARLVTGLSTEPAQPQRRQPPPPQEPPSQPEP
LAAAATAAADIAATVAADIAAAAANAAMDVDGGPAADETWLLRFDGACRRNPGPGGAGAALFAPSGAVVWTCSHYMPSRS
ETNNTAEYTALLLGVQSAVHHGASHLEVEGDSSLVIAQVKGTFACRNARLRQLRNRVRHALRSVDTHKLRHIDRQANAHA
DRLANRALDQRRTSSECGTHGSCMDSCLAVPTALAAQETPPAAPPSTSATPAEGNAMDDIAAEIAARDEGETFPVLPIGP
GSAPERQPRLRLRQLSDEERDAAADALQELADTMASKIEDADSWTSGEGYISSIPERIREVLQPYATAPPQPGRSRRQQR
RRPPRVTRNQREHRLDEALDDMAATQQATPRDQRAVRRARRRVGRVRASMAQQELRHEFAKDESKCVAKILKTASTETAA
EDEHPETCPIDAATLHAHFTGVNAPRTDFDYDATSGREFRAAMSDLPPATVEIDAFDAELTIDEVEDQLTRAAKTSSPGH
DGIDYGIYSRFAAQLVPLLHAVFQFCWRHRRVPRLWKVGIVRLIHKKGDPRQPTNWRPICLQPTIYKLYSGLLAHRLSRW
LEGNDRLPMAQKGFRAFNGCHEHNFMATTLLDQTRRQHRKLYQVWYDLRNAFGSLPQQLMWRVLRHLGVDSGFIDRCRDI
YRDSAFVVANAADGATDPVRQEVGVYQGCPLSPLLFVAALVPLVRRLEKLDGVGVPLADGVRPCTTAYADDLKVFSDSAA
GIRKCHDTVAGFLAWTGLRANPGKCASLAVTTNARGNPTRDSSMRLEVHDAAITTLSLHESYRYLGVGDGYDHVRHRLQL
EPKLKQLKREAVALLTSGLAPWQVVRALKVYVYPKVEYALRHLRPLQSQLQAFDRVVSKGLRHLLSLPRSATSEVLYAPT
SSGGLGLQPLVELHRALQLAHAWQMLHSKDPAIQAVARAQACQVVRKRYRLQEDHWRGRDDELVRSFLNSELAASPHAEV
LRRNGDIASLWSDVQRWLRIYHLRFEHCDETEAHGPLSFRVPHHNKWLTHKTVLRHVKLHLKIRHQTRWKGMVDQGKTVR
VHGGVGAKFMTTGAGLSDDDYRFGVKGRLNQVDTNSVLKRKRLRAHTTCRDPTCSSAETLAHVLNHCESNMDAIRQRHDD
ALEQIGSKIRGALDRAKSPTELRLNQTVPEYTGAALRPDIVLRNVAAKTMVIADLAVTFEDQAARARHSSLQLSHDHKTL
KYQPIVAELQHKGWRVQTAAIVYGTLGSVQPSNFKAYTEKFKLHKREARQLDLQLSSHCIRASHRIWGWHCRQHRDRQRS
GTASRASRGSGGAPRRTSQAPARR
>REX1-1_BF_pol#LINE/Rex-Babar 50-2938  [Branchiostoma floridae]
MCYANISNVRTRGNRGGLARKQKHCRIKSLVTNRLDVYANDYVSRRCVVNNRVLRKITTVPATHGRSTQQNFRTLPCLFL
SNVRSLVSKKCELEATLAYHSAQLACITETWTVPEIPDDVLAIDGFRLFRKDRLYGKGGGVALYIAEDIPVKRLYDLEID
GVEVMWLQARPKWLPRTVPILFVGIVYHPPCNNNKEGATKMVEHLITSCDCLYRKQPHAGLLLCGDFNNLPIQKLITVHP
HLKQVVTQATRGSATLDLILTNLAQYYCTPRTLPPIGSSDHSSVLLPPCVEHPTRSKPVKVMRRVATTVTKLNLGLSLAM
TDWSPVYEAALVEEKVKTFYSLTMTLVNQHLPVKVSATRACDKKWMTEGVKRAIRKRAEEFKRHGKSARWKSLRNNVQTS
IRHAKNWHYRNFIQTLKQEDPRKWWGAVNRELGRAQERSNSTTIEDVPDHEVAEVLNQYFSSAWCPGTSLHLFPLQCPTP
CVDLCSIGEVKTLLKGLNPHKASGPDDLPTWTLKHYADDLAPVITHLFNASYEEGVVPSIWKAANVVPVPKSKGAANASE
MRPVSLLPVAAKLMERCILKRLLPSITPAIRNQYAYLKGSSTVLAAIRMVHTWLSALDSRRHAAVLALFADMSKAFDRVN
HSILLQRVNDVVTNPRMVAWIQNYLQGRTQRVVANGKVSEWRVLTSGVPQGGVLSPYLFLLFMSTRDVVYSDTLDVGYAD
DVGLSRSISLEKDRVDNSMREEALQLDSWAECNDMLLNGKKSQSLLICFSRNIPLLPPLSLGGEPVPFSRVAKGLGFIFD
CKLSWHDHVQSLVSKASSRLHYLRLLTKQGMCVADLVQIYLSLIRSVLEYGHVLLVGCSKEQSDSMERVQKRALRIISLG
GRRSVPNLPSLKERREAAAVKLFKDMLRPEHPLHDLVPPQRRTVTGRQLRNKNAFTLPKARTDRLKQSFLHTAVRLYNDS
IS
>REX1-1_AFC_pol#LINE/Rex-Babar 6-2936  [Cichlidae]
MAPSMAASSRAPPSNGFFLCLILLFLHFFTSSTCLLVYDRQTLLDIKDGLSYNFPEFKFCNTDAPFADPPFISPETPLFS
GPGGRKRRRRGRRSGVLVRLRRRTYRPPLPSLLLANVQSLENKLCELRARISFQREMRDCCVICLTETWLSDKVPDSAIQ
LPGFSVHRADRSQDLTGKSRGGGVCFMINNSWCDYANVHPVKSFCSPDLEYLMIKCRPFWLPREFTAVIITAVYIPPQAD
TDRALRELYSAISSEETAHPEAAFITAGDFNKGNLKKVSPKLHQHIHFNTRGDRLLDHCYTSFRDAYKALPRAPFGQSDH
RSILLLPAYRQKLKQEAPTRRAVHCWTDQSESALRDCFDHADWEMFHVAARDIDEYTDSVCGFIRKCVEDVVPSRTVKSF
PNQKPWINGDVRAALAARSTAFASANTSDYKHAHYQLRKTIKAAKREYRDRVEQQFDNPRSMWQGLNTITDFRGKTSTPQ
TTASLCEDLNVFYARFDTANTMRPDSVRTADDVSAHTVSEEDVRKCFRKVNARKATGPDGIPGRVLKSCAAQLAGVFTHI
FNLSLSLSVVPACFKMATIVPVPKSSTISSLNDWRPVALTPIVSKCFEKLVRDFICSALPDSLDPLQFAYRHNRSTDDAI
ALTLHTALSHLEKRDTYVRMLFVDYSSAFNTIVPSKLDRKLQDLGLSSSLCSWILSFLSDRRQVVRLGSITSSPITLNTG
APQGCVLSPLLYSLYTYDCTATNSSNIIVKFADDTTVVGLITNGDETAYREEVSALTHWCQDNHLTLNVAKTKELIVDFR
RCREVHTPITINGAAVERVSSFRFLGVHLAEDLTWSVHTNKTVKKAQQRLFFLRRLKRFGMSPRILRTFYHCAIESILTG
CITTWYGNSTAYNCKALQRVVRCSERIIGGELPSLQDIYRKRCLRKAGRIIKDSSHPSHKLFRLLPSGRRFCSIRSRTSR
LRDSFFHQAIRLLNTS
>R2Nvec-A#LINE/R2 185-3598 [Nematostella vectensis]
MLRGTGNMNDKRDGSATADPTSALLGAVGDGSLVCNLCGLACKSRGGLSIHRRSKHATVYHAERQPAPRAKARWTNDEMI
LVARKQIASEKSRCSAVVEGMREAVPHRTFDAVKSLKTKNRNYTRILEQIRAECSEEEVIESGVLKDRTENVCVQTTSNV
PGSAGRAASVELEGNIQVGHQLAQKTMAGNNSRKQPANHTNWAEFNIEEGNITLRKSKRKANGMPDATHRPGPPTVDSLK
HPVCLLQGAADKRDEPHTVEQLYYNIEEGMPLAEEQQWSEKLFDAIDSSLLSVEVELGRIVPGCPDEETRQLIDREFLDF
IHSYSREKPPQRGLAKSKPPPKGPKSLRRQQYRQLQRLWDKNRSAAAEQALTGKWQEVRTAAGVPLSLMEVPWREIFETP
STTDVREPAPAGPVLWQLLRPVTIAEVEDAISSKKSASGPDGVPCAALQTMGAASLAAHFNLWLLAGTQPKRLTECRTIF
VPKEVNTHLPLHHRPITIGSVVVRLFHQILGKPMEAVLPLGSGQRGFRKGDGICQNIWLLHTLIRRSTDLLRPLKLVFLD
VKKAFDSVSHESLLIAAKRLGVPGPLLTYINELYSRSETVFEVGGESSGSVKVSQGVKQGDPLSSTLFNCVIDWAVSDLD
PHIGVLLGESRVSFLAYADDLVLLSETEAALTSQLNSIEKSLAHCGLKLSTGDSGKSASLNIVIDGKAKRWVVNPTPFLR
ASGGEIRSLVANETYKYLGINIGAQGVKAAEYNAFKEALDNLSRAPLKPQQRLFLLKTYLLPQLHHSLVLSRTTGKLLNS
LDALVRKAVRGWLKLPHDTHRAFFYAHQADGGLNVPSLYHLIPLLRRSRYERLTRVEDPEIREVSRTDYFKRVLGAAAAA
TTVAGHRIDSKVTLRLAWREALYASADGRGLSQCPLVPEVHSWVTDVSGLQTGSQYISAVRLRGALLPTAVRKSRGRGGV
NSNCDCCGRGQPEFLGHVLQTCPRTWGSRISRHNHVLSLIAKACRSRRWQVLEEPIIQTPAQLLKPDLVIWNHQAAYVVD
VSVPGDNTPLSTCHNRKVAYYSGESVREWVRSKTGHNPTVSSVVINWRGAMAKESYRLLTKDLRLAKTLPRLLVLRVLEG
GHGIWLNFHRSTFAVGVT
>R2-1_TG#LINE/R2  176-4348 [Taeniopygia guttata]
MASCPKPGPPVSAGAMSLESGLTTHSVLAIERGPNSLANSGSDFGGGGLGLPLRLLRVSVGTQTSRSDWVDLVSWSHPGP
TSKSQQVDLVSLFPKHRVDLLSKNDQVDLVAQFLPSKFPPNLAENDLALLVNLEFYRSDLHVYECVHFAAHWEGLSGLPE
VYEQLAPQPCVGETLHSSLPRDSELFVPEEGSSEKESEDAPKTSPPTPGKHGLEQTGEEKVMVTVPDKNPPCPCCGTRVN
SVLNLIEHLKVSHGKRGVCFRCAKCGKENSNYHSVVCHFPKCRGPETEKAPAGEWICEVCNRDFTTKIGLGQHKRLAHPA
VRNQERIVASQPKETSNRGAHKRCWTKEEEELLIRLEAQFEGNKNINKLIAEHITTKTAKQISDKRRLLSRKPAEEPREE
PGTCHHTRRAAASLRTEPEMSHHAQAEDRDNGPGRRPLPGRAAAGGRTMDEIRRHPDKGNGQQRPTKQKSEEQLQAYYKK
TLEERLSAGALNTFPRAFKQVMEGRDIKLVINQTAQDCFGCLESISQIRTATRDKKDTVTREKHPKKPFQKWMKDRAIKK
GNYLRFQRLFYLDRGKLAKIILDDIECLSCDIPLSEIYSVFKTRWETTGSFKSLGDFKTYGKADNTAFRELITAKEIEKN
VQEMSKGSAPGPDGITLGDVVKMDPEFSRTMEIFNLWLTTGKIPDMVRGCRTVLIPKSSKPDRLKDINNWRPITIGSILL
RLFSRIVTARLSKACPLNPRQRGFIRAAGCSENLKLLQTIIWSAKREHRPLGVVFVDIAKAFDTVSHQHIIHALQQREVD
PHIVGLVSNMYENISTYITTKRNTHTDKIQIRVGVKQGDPMSPLLFNLAMDPLLCKLEESGKGYHRGQSSITAMAFADDL
VLLSDSWENMNTNISILETFCNLTGLKTQGQKCHGFYIKPTKDSYTINDCAAWTINGTPLNMIDPGESEKYLGLQFDPWI
GIARSGLSTKLDFWLQRIDQAPLKPLQKTDILKTYTIPRLIYIADHSEVKTALLETLDQKIRTAVKEWLHLPPCTCDAIL
YSSTRDGGLGITKLAGLIPSVQARRLHRIAQSSDDTMKCFMEKEKMEQLHKKLWIQAGGDRENIPSIWEAPPSSEPPNNV
STNSEWEAPTQKDKFPKPCNWRKNEFKKWTKLASQGRGIVNFERDKISNHWIQYYRRIPHRKLLTALQLRANVYPTREFL
ARGRQDQYIKACRHCDADIESCAHIIGNCPVTQDARIKRHNYICELLLEEAKKKDWVVFKEPHIRDSNKELYKPDLIFVK
DARALVVDVTVRYEAAKSSLEEAAAEKVRKYKHLETEVRHLTNAKDVTFVGFPLGARGKWHQDNFKLLTELGLSKSRQVK
MAETFSTVALFSSVDIVHMFASRARKSMVM
>R2-1_SM_pol#LINE/R2 1091-4186 No obvious gag in 5end. [Schmidtea mediterranea]
MKKVLNNETEKLPGSNLTFMCGFCDREFDTARGRGVHESRGHLVERDAAVQSRVKAVVSKKYYYSNEEDVALAKMQLZHA
DLAKSEXLEAMYLALGKGRTREAIEQHIRKSLRYKGVLEEQRKLLETARGNVRQNNVGVPASNATKNLQRFLESLPLGTN
RREERLDRIIRSNSIESQRLELIHYCNDMCQDFVQLDCQXNPINAIRRRNPKRLSKKQLKRAKFSALQRLWIRDRKAAAQ
LVLKDKLDSLLSNKEDSKDLGSYWQQVFERESELDRRPIPQVVENEELNSPVLEKEVEWAVKNIKKSTAAGPDGLTALAL
KKIPYSELVKLFNIILLVGFLPDVLKNSRTILIPEVDNPQGGGDYRPISINSVLTRTLNKILAKRVSEGDFGINGQKGFK
SVDGCLENLATVESILADARMKKNKLAVVFLDMSKAFDSVNHESIVRAGEIKGYPKLLMTYVKECYNDATTNVAGVTAKF
NRGVKQGDPLSPALFNNVIDLAIERVSGTGIGYNMGGKKYSVVAYADDLVLFGESREGLQIALTALLEELKLNGLTPNPA
KSASLTFERSGPHWFASTDTVTALGDQIPAMGNIETYKYLGIKFNSCGVVKGSLPGIYTKKLELISKAPLKPQQRLAMLT
DFLIPGVLHQAVFGQTNAGDLRSLDKRTRRAVRSWCHLPSDTSTAFIHAKAKDGGMGIPSIRAEVQFGKLDRFGKLPNVK
DERSKVLADNAHIKKKMLEKLGVGIPIKGVRCKNKLEFYNKMREELIKSNDGIGLKEASLVPSANTWLKLSDLHMSGRTF
VGCLKTRGNLMATVTRTSRGGQNPGIELNCKKGCQYQGSLNHIVQKCPVVKGLRIKRHDEVVKYVEEITKKAGWSATMEP
IIPFEGSHRKPDLVLVRGDLGKVVDIQIVSDHCGLDEKNSCKIGKYDNDIIRNYVRGLGPSRVEVAAITLNWRGVWSRDS
FNLIKRLGMTEMDAKIISMRVLASTAKMFKTCKKVLEPVCRTKTADCDGYGPEETSARPCHELNLKESSGT
>R2-2_NV_pol#LINE/R2 1-1738 via tfasty with R2Ci-A_pol, 2 frameshifts. [Nematostella vectensis]
GTQPVQLCSGRTIFLPKETVPETEQQHRPLTIASAVIRLFHKIMAARLNTTVNTNEAQKGFKAGDGIAQHVLTLRAIIDS
AKSDLKPLNLVFVDVRKAFDSVSHETILIALKRLGVPPPLLSYVCDLYSRSTTIIQHGGRGSQPISVRQGVKQGDPLSPF
IFNAVIDWALAELDPLIGVKFGGIMVNALAYADDVVLLAETRAGLSKIVSAFERNLALGGLTISSGPKGKSATLSIAVDG
HAKKCVVVDEPFLTVAGKVVPSIGPTSDYRYPGILISAGGARVRTDCREILTEGLKNITRAPLKPHQRLILLKTYFLPRF
MHQLVLAPVNDGFLRWFDNCVRAACFTRWLKLPHDTCMAFFHAAILDGGLGIPSLSYLVPLLKRDRFLKICEATDSCSKE
LRGHPFLATLLNRRGLPTKIGGVLASDKGAVRRGWAAELHGRLDGKGLGQSRTVPGAHEWIESPPPLELGGAEFVGAIRA
RGGLLFSKTRAARGRQVANVNCESCLRPQSAQHMVQICPKSHGARIRRHDGIVEILAKAATRKGLMVQCEPLISDPMYGL
RKPDLVVAGEQQAFVIDVTV
>R2_DM_pol#LINE/R2 286-3354 R2_DSe_pol, R2_DSi_pol and R2_DYa_pol are near-identical. [Drosophila fruit fly genus]
MTTRPSVDIFPEDQYEPNAAATLSRVPCTVCGRSFNSKRGLGVHMRSRHPDELDEERRRVDIKARWSDEEKWMMARKEVE
LTANGCKHINKQLAVYFANRSVEAIKKLRQRGDYKEKIEQIRGQSALAPEVANLTIRRRPSRSEQDHQVTTSETTPITPF
EQSNREILRTLRGYSPVECHSKWRAQELQTIIDRAHLEGKETTLQCLSLYLLGIFPAQGVRHTLTRPPRRPRNRRESRRQ
QYAVVQRNWDKHKGRCIKSLLNGTDESVMPSQEIMVPYWREVMTQPSPSSCSGEVIQMDHSLERVWSAITEQDLRASRVS
LSSSPGPDGITPKSAREVPSGIMLRIMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATR
LNSSINWDPRQRGFLPTDGCADNATIVDLVLRHSHKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNT
YEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIGAKVGNAITNAAAFADDLVLFAETRMGLQV
LLDKTLDFLSIVGLKLNADKCFTVGIKGQPKQKCTVLEAQSFYVGSSEIPSLKRTDEWKYLGINFTATGRVRCNPAEDIG
PKLQRLTKAPLKPQQRLFALRTVLIPQLYHKLALGSVAIGVLRKTDKLIRYYVRRWLNLPLDVPIAFVHAPPKSGGLGIP
SLRWVAPMLRLRRLSNIKWPHLTQNEVASSFLEAEKQRARDRLLAEQNELLSRPAIEKYWANKLYLSVDGSGLREGGHYG
PQHGWVSQPTRLLTGKEYMDGIRLRINALPTKSRTTRGRHELERQCRAGCDAPETTNHIMQKCYRSHGRRVARHNCVVNR
IKRGLEERGCVVIVEPSLQCESGLNKPDLVALRQNHIDVIDTQIVTDGHSMDDAHQRKINRYDRPDIRTELRRRFEAAGD
IEFHSATLNWRGIWSGQSVKRLIAKGLLSKYDSHIISVQVMRGSLGCFKQFMYLSGFSRDWT
>R2_BM_pol#LINE/R2 620-3964  [Bombyx mori]
MMASTALSLMGRCNPDGCTRGKHVTAAPMDGPRGPSSLAGTFGWGLAIPAGEPCGRVCSPATVGFFPVAKKSNKENRPEA
SGLPLESERTGDNPTVRGSAGADPVGQDAPGWTCQFCERTFSTNRGLGVHKRRAHPVETNTDAAPMMVKRRWHGEEIDLL
ARTEARLLAERGQCSGGDLFGALPGFGRTLEAIKGQRRREPYRALVQAHLARFGSQPGPSSGGCSAEPDFRRASGAEEAG
EERCAEDAAAYDPSAVGQMSPDAARVLSELLEGAGRRRACRAMRPKTAGRRNDLHDDRTASAHKTSRQKRRAEYARVQEL
YKKCRSRAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALGRAEWHGGNRDYTQLWKPISVEEIKASR
FDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILA
RRLLACCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIA
HLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGM
QESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSI
SSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAI
PSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRE
STRTPTSTKWIRERCAQITGRDFVQFVHTHINALPSRIRGSRGRRGGGESSLTCRAGCKVRETTAHILQQCHRTHGGRIL
RHNKIVSFVAKAMEENKWTVELEPRLRTSVGLRKPDIIASRDGVGVIVDVQVVSGQRSLDELHREKRNKYGNHGELVELV
AGRLGLPKAECVRATSCTISWRGVWSLTSYKELRSIIGLREPTLQIVPILALRGSHMNWTRFNQMTSVMGGGVG
>HaTad1-5_BG_gag#LINE/Tad1? 125-1573 [Blumeria graminis]
MASWRARKVDFAAEKIFTAPQPPPTDSGTAAITAVESLASSTGVNMDTLMTVGLFLNKVRDRLVIAGTDKSATPMVEVGE
ALDAFKAHATMLQSKLKASRMEERMLALEKAVKKNLEEPSHKTAASAVQGMGGRPTYASIVAPPATKAAVRIRIQGAENM
EPAALLDKAKIHIEGAYAVRKLRSNDTEVFVQSVSQRDAALSMAQPKEFCVLKQDYPVEILGIPLGTFIRGGKNPNNGEF
INQVEAETKVRIPELKINRVRWLFDGKEHRWMGANGHTRGSIVASLPTEALQREVIRNGIVYNSMLYTAQLWSPRAQIKQ
CFNCCQWGHTQASCNRVRRCGECAGTHQTRECPRKSVLCCNCGKDHKSWQKGACQNFASYKASVQRARYELMERTAEYRK
GETLTTASTTTTTAKPTDDQGFTLVSHQKPEVLKRGPGRPRKQVLVNPPPQLFGPSGSNSRPQSSLFSTRGQGKDGEVEY
NFS
>Tad1-24_BG_gag#LINE/Tad1 69-1463  [Blumeria graminis]
MESNPTKDSHSRKSHTAPRAGNDASNNATDTDTALKRFKKAVEGDELSTRAYKKIINEAIRVIEGIRDAKAQSTHKASDE
SPTIAKILQEIQNIKASISLTKASAPTQGHSWAQVAGKAEVASTTIRIHDEDEKKAIARLSSEELVKKMGINEVIAAKQM
SNGQVKVFFTGQESKEMVEKQKEWTTKLAPTAQVASPMYQVLVHDMPLSFEPESHDQIKLLQQANALYLQGIRIQKAAWL
KRSSILGKSSGSLILWFDEAESADRAIKKGVMWRYEVKPAELFRSGFRAMQCFNCQKYGHIAKVCTAEAKCGQCAKAHNT
RVCTGKQEARCSNCSRCHEAWNQSCPVRIAAKAKAIQNRTQDPGTYKRPELPSREAEAEWQIVGSRKRRAGTAGPQLIGA
DGEVIVRRGPGRPRKSPTSGDLPATWAKMPTKTDLMFSNAQTNPRTVTREEQAEGSDAPLCDMTQ
>I-5_AO_pol#LINE/Tad1? 1405-5169  gi|83776057|dbj|BAE66176.1 [Aspergillus oryzae]
MNKTLRVIQLNVRKQGAVHESLMNDEETQNTVALAIQEPQARRIQGRLLTTPMGHHKWTKMVPSTWREGRWAVRSMLWIN
KEVEAEQVPIESPDLTAAVIRLPERLIFMASVYVEGGNASALDDACNHLLDAITKVRRDTGVVVEILIMGDFNRHDQLWG
GDDVSLGRQGEADPIIDLMNECALSSLLRRGTKTWHGGGHSGDCESTIDLVLASENLADSVIKCAILGTEHGSDHCAIET
VFDAPWSLPKHQGRLLLKNAPWKEINTRIANTLAATPSEGTVQQKTDRLMSAVSEAVHALTPKSKPSSHAKRWWTADLTQ
LRQIHTYWRNHARSERRAGRKVPYLETMAQGAAKQYHDAIRQQKKKHWNQFLADNDNIWKAERYLKSGEDAAFGKIPQLL
RADGTTTTDHKEQAEELLAKFFPPLPDNIDDEGTRPQRAPVEMPAITMEEIERQLMAAKSWKAPGEDGMPAIVWKMTWPT
VKYRVLDLFQASLEGGTLPRQWRHAKIIPLKKPNKENYTIAKSWRPISLLATLGKVLESVVAERISHAVETHGLLPTSHF
GARKQRSAEQALVLLQEQIYAAWRGRRVLSLISFDVKGAYNGVCKERLLQRMKARGIPEDLLRWVEAFCSERTATIQING
QLSEVHSLPQAGLPQGSPLSPILFLFFNADLVQRQIDSQGGAIAFVDDFTAWVTGPTAQSNREGIEGIIKEALHWERRSG
ATFEAEKTAIIHFTPKTSKLDREPFTIKGQAVEPKDHVKILGVLMDTSLKYKEHIARAASKGLEAVMELRRLRGLSPSTA
RQLFTSTVTPVVDYASNVWMHAFKNKATGPINRVQRVGAQAIVGTFLTVATSVAEAEAHIATAQHRFWRRAVKMWTDLHT
LPDTNPLRRNTARIKKFRRFHRSPLYQVADALKNIEMETLETINPFTLAPWEARMQTDGEAMPDPQAIPGGSIQIAISSS
ARNGFVGFGVAIEKQPPQYRKLKLKTFSVTLGARSEQNPFSAELAAIAHTLNRLVGLKGFRFRLLTSNKATALTIQNPRQ
QSGQEFVCQMYKLINRLRRKGNHIKILWVPASEDNKLLGLAKEQARAATHEDAIPQAQVSRMKSTTLNLARSQAATTKAL
PEDVGRHIKRVDAALPGKHTRQLYDGLSWKEATVLAQLRTGMARLNGYLYRINVAQTDQCACGQARETVEHFLFRCRKWT
TQRIALLQCTRTHRGNLSLCLGGKSPSNDQQWVPNLEAVRASIRFAMTTGRLDAV
>ATCopia1#LTR/Copia 203-4702 [Arabidopsis thaliana]
MVKQKKKTQNRSSSPTSEYSPMKTRAGSSYPVADDIVEPPSLKVMANRDRFQSNSASIESYDNAHSPYFLHSSDHPGLNI
VSHILDGTNYNNWSIAMRMSLDAKNKLSFVDGSLPRPDVSDRMFKIWSRCNSMVKTWLLNVVSKEIYDSILYYEDAAEMW
NDLFSRFRVSNLPRKYQLEQSIHTLKQGNLDLSTYYTKKKTLWEQLANTRVLTVRKCNCEHVKELLEEAETSRIIQFLMG
LNDNFAHIRGQILNMKPRPGLTEIYNMLDQDESQRLVGNPTLSNPTAAFQVQASPIIDSQVNMAQGSYKKPKCSYCNKLG
HLVDKCYKKHGYPPGSKWTKGQTIGSTNLASTQLQPVNETPNEKTDSYEEFSTDQIQTMISYLSTKLHIASASPMPTTSS
ASISASPSVPMISQISGTFLSLFSNAYYDMLISSVSQEPAVSPRGWVIDSGATHHVTHNRDLYLNFRSLENTFVRLPNDC
TVKIAGIGFIQLSDAISLHNVLYIPEFKFNLISVSVLTKFLKTKVSFTSDECFVQELTKELMIGRGSQVGNLYVLDFNEN
NHTVSLKGTTSMCPEFSVCSSVVVDSVTWHKRLGHPAYSKIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQKHLSFQ
SRQNMCSAAFDLVHIDTWGPFSVPTNDGFKYFLTIVDDFSRATWIYLLKNKSDVLHVFPAFINMVHTQYQTKLKSVRSDN
AHELKFTDLFAAHGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSP
YEKLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFHEDIFPFISS
TIKDDIKDFFPLLQFPARTDDLPLEQTSIIDTHPHQDVSSSKALVPFDPLSKRQKKPPKHLQDFHCYNNTSTILYPITDY
ISYSYIAEPFHAFINNITNAVIPQRYSEAKDFKAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSI
ERYKARLVAKGYTQEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEA
LPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVLVYVDDIMIVSNSDDAVAQFTAE
LKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVG
KLMYLQITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAY
CMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKVPFIPPAYLYCDNTAALHIVNNSVFHERTKF
VELDCYKTREAVESGFLKTMFVETGEQVADPLTKAIHPAQFHKLIGKMGVCNIFAPLPS
>CAULIV-1B_Mad_env?#LTR/Caulimovirus 5766-6935 [Malus x domestica]
MSGNSNSQRRLPATLPPPPPVKQESIPDSSSALAITNRFAPLGSTVGQFRPNYQTALASPYDPYSSMPSPSTPKTPSFAK
TSPYVKKNPMEYLFSIPXHINKKQXPXKIAKTIXPPNFHYXPTESXKTLKYYQAILSETEXIXIKPIYSTTHQNKILYHS
LHIGKFLTEQEWGXPLYXTKXLHTQHXLIPNNKYNYFDYIQAWTNXFLHQTXDFSHSWFVTFDKSFRLNFPAWFPXWWSA
HGPTASLLPEDLMQVLSSGFQKKFDRSRFDDRITLLSLFMAKYKVPWIXKWNYEVETGEVYRARWVKWWDKFDYGKIISL
VSSEFPIXPVPTVSPPATQQRHCQKSQKIPNXYQTLVLHXPSKENPNHPSPPKXQVRRRKRNPPAXENGR
>Tad1-17_BG_gag#LINE/Tad1 99-1952  [Blumeria graminis]
MPPTRRTHQNAISGITKDRVIKPYKLHESILTLARQKLTDKGLEASEKNLDSIEAALEANVRNIPEVEMLDVEVQKLKSI
SDSRWASSIPEDAEKAPGPAETPKETVAAPEERATVPALPRLKEVRSAKRADIPSTKAAGAENSSLAPPPTAIEAADGKN
TYPPELLAAIEAEERRARQKAAQFTICSTAISSVEAALQPLSIGEDKNFVDSIKVYLRAAIAQFVAAGPNTAPPVLPQRP
IVATPRATTIPVAIPRNITKATAPLPLRSTWATVTRAGHQKSGAQAPANITSVSAASSARKPEKKPTASTTTAKDDRIFL
RLDANHEWRQLSPAGVREAVAKQTHCTPADVDQVQRVPTGFAIRAKNTDAKTRLLEASSTFTQVEAKLEPPSDLVSLRIA
TVPVAVFGLEGRVEVTAEMVAAEILRVTSCTPDRVRIHGKTKLGAPYRSWAALFPRNASPKPGFRLFDDSGIATIQRNRP
PIQQCRRCLGFHATRGCSRAPACWNCGSTMHSAFECKAASKCRNCGGPHQSGSRDCLARPNRSGPATREQLVTIRQAGQR
EYQAVARAKAATKAAEAAASAARATRPTSPAVGKDTSSTDTAMAEGSGFGALNPEEAL
>Tad1-4_TMe_gag#LINE/Tad1 188-2602 [Tuber melanosporum]
MALGDGKTSETDGLGDSRHASPSCRHKRNSQSLVAPTPSPAQQSPARTPSPLPPSIKDVAMMLEDGKNTEATGLGDSKHA
SASPPTSPSLSSLVPLPATVETPDSAREVLEQADQELAMILRRKTPSPMPQLTGVSREMSEALDDIVVGSAIQLSDSSSS
TSETSEFSSEDDEPDYAKLGRMLAESEDRRPIPIVFGERGDGFEDLDQVSEGFAVMADRMNLMSDGLEQALKMIASQGMK
IDELEKELGCLRALQAVGGNADTRRVRMYSDVAKSSPAPSRATKSAKATTPATSTTPAVSSSGSSSRKVSFTETDDTPSA
PAAKPKRKRGPRKKKGPSEKALGKRPETAGAADRPSTATKADDPAPVAPPAAPAASVSGPAAYAPGPWKVFTTKKTPKPL
APSPRTDRNRVPSSSPTPNARARHITLRFATRKHVTLPDGVSTESIRARANQLLANQHKIAGKTPYFREARLRNEIGCIF
MTLSEHTADQIWHLLDKCHAVLVRDLNLADFSFARDVAKVKVLVAGVPLADTGRGSVWSVDGWTGDKAYDGLRNDLELAN
PGICVSGRPNLLGSIHAMKAAKAVSCGVRFVVDRNEALEEALKKGKVCLRGGPRPIRIWTEHRPAAVCGKCLQVGHNQIT
CGFPERCRFCHNRHLSKSHKCGQLNCSGSVGEACMHTRRFCLLCEQSDHFTGYNQCPAILAASSVPSSLASGAATPVVAD
DTSRRFGVADKSVNRMIRRRRGKSTTPQSDRIIRDKEAATAAAKGKTVPSSSSLGSGPSAXKATVPVSILKKPVSGASGS
AEAPF
>Tad1-4_BG_gag#LINE/Tad1 223-1782  [Blumeria graminis]
MEGLNQSQAVDSIPFYNPALSDWDTPGSSQQHDMEIDPINYDDLIEYDDPVDDPFSEPVPAGLMQDTLTKSVKSLTARAK
EAETLFGGISALIDKHSSAPNYATLPAKQAEAFKSLCNDLAKVAARHFDAYLCDKPVTATNDAAPPSRNAPKTAQTYANA
ASRASNKQFAGRHTPTPQTTAKARLQPKPTRTDDRLFVRIPEGNTLRDHSAYAIQSHLKAKLGNEGQILTNVQSTKTGFA
LCPKDGDSENLMEKIKSVSFFGDAPVEKATPWTSYRIKNVPRTYGALEHINEEWKYCLKPVTAEALKDALATAAGAVPVA
IAASRDNDANPTSSSTTWIVRFPESHQRLPRTLFLFGCRTQTRILPKRQMAVQCTRCWLWHNTRTCASDLRCRLCGSSRH
SEKDHANQCGATGQHICPNRCIHCHGPHPADDVSCDLRPKPSGPPKTKNQVTAIRQINADARLRKQAEAGCIKATANLKT
MHTAAATPAEIGQTQPVSVKSINPYEVLLTGDQSNDQAQS
>Tad1-7_BG_pol#LINE/Tad1 1788-5449 via tfasty with 83584378_Mpi_pol, 1 frameshift. [Blumeria graminis]
MVRGRGFKKQTASGLCIFQVNVGKSGPAHDSALALASQSGADMILIQEPWIFSDFSSKVTKTHPGFQTFSPISEWTARPR
VMTYVRKGRSLSPFQPKSYSRDLICVYIHRRGRRMVDCWNIYNAPAGSSDAGEGLRVLFTITESPNILAGDFNIHHSAWD
PAARQDSAHGESLLVWSFKKGLSLLNPYGIPTHDAGGVLDLCFVQSRSHPSCKIRQDLDAGADHRTLVTHIPDDGPDTPA
LGRLQYAACNWEAFRQNLSDQLTTPPSANLSEEASFLVDALSGALQAACPRSREKSRSTPWWNAKCAEAHRIFCRARRLG
SNAIEERRGFGKTVRKAKQEYWRQKIEKISNLTEAYQVTRWYKKQSLFQTPPLSDQGGHAITPEAKSELLKDTLLSRHLD
HDDLPLDVPTVPRKNIQWPSLTDEEIYRSCCQVTCSAPGIDEITTDSLKKAWPVIGYRIAALFRQCIQSGLHPPVFKKAN
IIILPKMGNRNLSLPKSYRPIALLSCLGKGLERLIARRLAYLALKHRILSQDQCSAVPRRAATDLTTALACDIQMAWAKK
KVAGVVTVDIKGAFDGIQKGRLSYRLRSQGWPPNIIHWVISFMEQREATLSLDGIKSPSFQIHCGLPQGSPISPILFLLA
IEGALNLSRGRFGYADDIAHFASAPDLSSCAKLLQDQLDQTLTWGHGNGISFEISKTELQYFHRKHGTPEEPSLYINGHE
IRPNDHTRWLGVYFDRNLRFRYHVSQACRKALSITGHLKRISCTTRGINPHLLKQALQGVAFATLFYGAETWYSKSTPKG
IITRIQCRINDAARAVLPVYCTTPTAALLRETGWGPALAWLERIHDRLAVRVAAADPRHPLRRRWNSPRMRWIRQRTSPE
LSTDTIPSPWDINVKSHLQTIGAVGKRIGLQEFTKWHTSQSPLDLFVFSDGALIDNQAGAGYVIYRGFSQEVGRGSLPLG
ISAEVYDAEIAGATEGLAAALRNPMARYANRVFVCLDNQEAALRLLVCTPTPSSSPRITQFRGLAKAWTRRDRCHFTEVG
SVIIRWCPAHVGILGNEAADVLAKQACKLPASSLATSISRAKRDIKIRYQDSATRYWTQNAPERYKRLGIRENVGDSLEL
RSLDRRTLGLLLAARSGHGDFADYHRRFQHLEALLTCSCGQEKSPDHFFFCRLGRSRSRLQGGPRHPNVGIPWVLSSPEG
AIAFSKWVHKTKFFEETNSHS
>Tad1-11_BG_gag#LINE/Tad1 49-1761  [Blumeria graminis]
MPPGRRKKPGSSLRPSPTCAATRVSKRIKTRSLLPTIREESNIATLQEDVLIHQVDEMITDSADEYMPAYSDDESEKSDQ
DHNSPSQIQASKDRIGAPSKNPKINQARLGLAHSMHASPSHEYRTSTHSRENVSPYVRAVTSPSAAVTNEFATALLAWQN
AGSEYLRSLPPAIAADLRAIVTRSAARVIAGLPVFENGPMNQQPQTYSHQMTVPARQAPAKTATKLTYANVTKSGPPAPA
QDTGFAPKIHPKKGKKRAKTPKIDTRVIVRLPTDHPLRLQDTLLVRSRLRGLLDRPELIKDIRNVPSGIALVAPSASQAP
ELLQAAQALQPITGNAQIERQEKRLNYLLGPVPKYGYNASGVRESLSDEEIRQELKSANVDTTKIYSMNWTRRSLASPEG
DGTLRLVVSASATSKLPTHLRLFARATRLKPLDNRPQLQVCPRCHGYHNVNACTRHARCGICAADSHNGPCVTPVKCLNC
AGPHQASSPGCPARPLRANGVFIRPDKNRLRAIRQEGHRAWVALNPPPLPPTEVEITQQARATLEGSPTPSAAIIGSGSR
FAPLITMEDQL
>Tad1-10_BG_gag#LINE/Tad1 112-2001  [Blumeria graminis]
MPPVRSKPARPKDAIENRKHIKHVARLKACNKLGSLTPAQEMNIDRLVDNIALDDEMLDVDSLDINKILKDLERLPDSIH
SRPDATGAGKAATSHKNPGNATTGQQTLPLMKVAVPDTRLTAIVDVNTAKGAASTQNHLEHIPGTAEQNPTPHSGNERRQ
TEECPPELRALIEAEERRAAKTAENVKICTAAINGVENALTPLSKGSSVQFIDSMKVYIRAAIAHFMIAGPGTTLPSLPP
RPDIQATAGKTAESTVGQQSEPQRKTAQAEVHQPKTTWASITRNGLQSIPVPTKAAQSTPKATNSTRTAKTSTGPTKPAM
QDERLFLRLGKEHPWRTLSPFGVREAVSKMLELPQTKIEHVYRVPTGFAIRAENQEARTLMLSLAGSFAQQDAILEKATD
LTSLRIATVPVAINTIMGRVLITEEMVTDEIVRVTKTVPVKVRPHGKGRPGAPYQSWVALFEKASTPRPGFRLFDDSGIA
VRHQPRQGISQCKRCLQFHGTRGCSRAPACWNCSSTMHSTAECKAHTKCRNCGGPHRSDSRDCLARPTKSGMASKDNLQA
IRQASQREFAAVTRAKAAVRRAEAAMTAAAEASNTNQPGFKSTNCFEVLMSDATATVAEVDEASNQQKSL
>ATCopia17#LTR/Copia 250-5026 Wised via estwise with ATCopia62 protein + both termini ORF-extended [Arabidopsis thaliana]
MGSMNNPLNSSSLRPPPASVPEQSRYQADQYENPHHLHTSDHAGLVLVSERLNTASDFHSWRRSIWMALNVRNKLGFIDG
TIVKPPLDHRDYGAWSRCNDTVSTWLMNSVSKKIGQSLLFIPTAEGIWKNMLSRFKQDDAPRVYDIEQRLSKIEQGSMDI
SAYYTELQTLWEEHKNYVDLPVCTCGRCECDAAVKWERLQQRSHVTKFLMGLNESYEQTRRHILMLKPIRTIEEAFNIVT
QDERQKAIRPTPKVDNVAFQTVSYNSGDPYMENMENGFIAAYNTARPXKLPLCTNCGKVGHTVQKCYKIIGYPPGYKAAT
SYRQPQIQTQPRMQMPQQSQPRMQQPVAAQMQTNMPNTGPMQXSLMQIKCRWFHTRIQCRWRMLLMLNXGSFVPMMPHVT
SGGNNLNLQDLSQDQIQHLISQFNAQVRVQEPAATSIYTSSPTATITEHGLMAQTSTSGTIPFPSTSLKYENNNLTFQNH
TLSSLQNVLSSDAWIIDSGASSHVCSDLTMFRELIHVSGVTVTLPNGTRVAITHTGTICITSTLILHNVLLVPDFKFNLI
SVCCLVKTLSYSAHFFADCCYIQELTRGLMIGRGKTYNNLYILETQRTSFSPSLPAASSFTGTVQDDCLLWHQRLXHPSL
PALQKLVSSIPSLKSVSSTASHCRISPLAKQKRLAYVSHNNLASSPFDLIHLDIWGPFSIESVDGFRYFLTLVDDCTRTT
WVYMMKNKSEVSNIFPVFVKLIFTQYNAKIKAIRSDNVKELAFTKFVKEQGMIHQFSCAYTPQQNSVVERKHQHLLNIAR
SLLFQSNVPLQYWSDCVLTAAYLINRLPSPLLDNKTPFELLLKKIPDYTLLKSCLCYASTNVHDRNKFSPRARPCVFLGY
PSGYKGYKVLDLESHSISITRNVVFHETKFPFKTSKFLKESVDMFPNSILPLPAPLHFVESMPLDDDLRADDNNASTSNS
ASSASSIPPLPSTVNTQNTDALDIDTNSVPIARPKRNAKAPAYLSEYHCNSVPFLSSLSPTTSTSIETPSSSIPPKKITT
PYPMSTAISYDKLTPLFHSYICAYNVETEPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKWVFTIK
YNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGY
TPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFLGANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSA
VENLKELLRSEFKIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNAT
SYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASSELCLNGFSDADWGTCKDS
RRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPV
FHERTKHIEIDCHTVRDQIKAGKLKTLHVPTGNQLADILTKPLHPGPFHSLLKRMSLSNLYLPLQQQGR
>COP2_MT_pol#LTR/Copia 2604-6107  [Medicago truncatula]
MSSYGEMCLADSATTHTILKDKKYFSYLLKGESTVNTISGTIKIIEGSGRANISLCGGTKLYIKNALYSPKSHRNLLSFK
DIRLNGYHLETRNEVSVEYLCITKHDLDRKCVLEKLPTFSSGLYYTYISTIEANVIVNQKFTNHDNFVVWHERLGHPGSI
MMRKIVEHSCGHQLKSREILQSNKFSCTSCSQGKLITRPSPTKIGSESLNFLERIHGDICGPIHPPCGPFRYFMVLIDAS
TRWSHVCLLSTRNQAFARLLAQLIRIRAHFPDYPVKKIRLDNAAEFSSQTFNDYCMSIGIDIEHPVAHVHTQNGLAESFI
KRIQLIARPLLMRSKLPISTWGHAILHAATLIRIRPTSYHDSSPLKLVFGQEPNISHLRIFGCAVYVPISPPQRTKMGPQ
RRLGIYVGYESPSIIKYLEPTTGDLFTARFADCHFDESNFPTLGGEKMQLKKEISWNELSLSHLDPRTNQCELEVQKIIH
LQSLANQLPNAFTDPKNVTKSYIPAANAPIKMDAPVGLSHIANESQPRMKRGRPIGSKDKNPRARKGAKRKDGLNEDIET
LKEPSDIINISVPEEPNQVPEIHENQEISINYVTSGRQWNRHEVNVDDIFAYNIALNVMSDNEDHEPRSIKDCRQSENWP
KWKDAIKAELYSLNKRKVFGPVVRTPKGVKPVGYKWVFVRKRNENGEIARYKARLVAQGFSQRPGIDFNETYSPVVDATT
FRYLISLIVYEGLNLHMMDVVTAYLYGSLDSDIYMKIPEGFNLPDTNSSGSREDYSIKLNKSLYGLKQSGRMWYNRLSEY
LLKEGYKNDSVCPCIFMKRSENEFAIIAVYVDDINIIGTPEELPKAIDCLKKEFEMKDLGKTKFCLGLQIEHLNNGIFLH
QETYIAKVLKRFYMDKSHPLPTPMVVRSLDVEKDPFRPREEGEELLGHEVPYLSAIGALMYLANYTRPDISFSVNLLSRY
SSSPTQRHWNGVKHVLRYLRGTMDMGLFYPKVSKLELIGYADAGYLSDPHHGRSQTGYLFTSGNTAISWRSVKQTITATS
SNHAELLALHEASRECVWLRSMIQHIQKNCGLSSGRMDATIIYEDNTACIAQLKEGYIKGDRTKHISPKFFFTHDLQKDG
DISIQQIRSCDNIADVFTKSLPSKVFEKLVLRIGLRRLRDICLHEGEK
>COP2_MT_gag#LTR/Copia 1403-2440 [Medicago truncatula]
MIVVSMSNLSKLHFEALKISGHNYLTWAVDAEMYLAAEGNADAIKEGNKASEQQKAKALIFLRHHINEALKNEYLTVKDP
LVLWNKLKDRYEHLKAIILPKARYDWMHLRLQDYKSVTAYNSEVYKITSQLELCGEKVTDADLLEKTFSTFHASNMLLQQ
QYREKGFQKYSDLISCLLVAEQNNELLMKNHEARPAGVAPFPEANASQHNHFGEARGRGRGRGHAHNPNGKFKTPFFHQK
WKNNEKIEKEKGGQNNKTNENICYRCGGKGHWSRTCRTPKHLVDLYQQSLKNKGKKVETHYAYNDGDDADYDIYGDLDTT
PLDIGDFFEDPNGKIDHLIGDGTVKK
>COP8_MT#LTR/Copia 18-3923 via tfasty with TONT1_LE, 4 stopcodons.  [Medicago truncatula]
MAASLKEMTSDFVKLEKFDEGNFICWQKNMKFLLTTLKVAYVLNMARPEEKDDETVAETRDRQKWDNDDYICLGHILNGM
SDSLFDIYQSSPSAKDLWDKLETRYMREDATSKKFLVSHFNNYKMVDNKSVMEQLYEIERILNNYKQHNMNMDETIVVSS
IIDKLPPSWKDFKRTMKHKKEDISLEQLGNHLRLEEEYxKQEGIKNHVTQEKVHVMEEGNSSKSSKKRNHENDKSHHNHN
GNNNKKKRKGECYFCGKEGHFKNECRFFKKKNKEKNSRATNDDFVAVISEINMIEDVDSWWIDSGATRHVCKNKKMFKTI
NKDVSVLYMGNDSTVQVQGKGTIEIEFTSGKTLTLKDVFYVPEVRKNLISVPLLNKNGFKSVFEGDKFILSKGGVFVGKG
YLCENMFKCNVANINNNNNMISAYIVxSCDLWHMRLGHVNFRKLEDMMKSNLIPNFDKNFDSCTTCMLTKITRQPFKSVK
RSSRVLDLIHSDVCDLHGWPTIGGKKYFVTFIDDCTRFCYVYLMHSKDEVLDKFKIFKAQVELQHETFIKCFRSDRGGEF
YHPSYFESTGIVHQVTAPYTPQQNGIAERKNRTLVEMVNAMLSYSGLSKGYWGEAMLTACYILNRVPNKRNKITPYELWK
QRKLTLNYLKVWGCRAIVKVPEPKRKKLGERGIECVFLGYAENSKAYRFLTIESNDSYFVNTVIESRDAIFQEDRFNSIS
YPKDIVHSNVQNLENNESDIDTLDGSELRRSKRIRKEKDFGSDFFMFLVEGTGKSINSYGPICFNLESDPVTYEEAIKSQ
DSAFWKEAIQEEMDSIMGNKTWKVVDLPPGSKPIGCKWIFKRKMKVDGTIDKFKARLVTKGFTQKEGIDYFDTYAPVARI
ASIRMLIALASIHKFVIHQMDVKTAFLNGELDEEVYMKQPEGFVIKGQEDKVCKLTKSLYGLKQAPKQWHQKFDQVVLAN
GYIINESDKCIYSKFQNGKGVMICLYVDDMLIFGTNINEVEETKAFLSNNFDMKDLGEADVILGIKIIRDGNHIGLSQSH
YIEKVLQKFNHLDCKPISTPFDQTVSLQPNKGCPVAQLEYSKVIGCLMYAMTCTRPDIAYAVGRLSRYTSNPSKEHWHAV
KRVLKYLKGTMNYCLTYSGDPSVLEGYTDASWVTYVEDHASTSGWIFNLGGGAVSWGSKKQTCIADSTMAAxFIALAAGS
KEAExLRNLLYDIPVWQKPMAPVSIHCDSQSTLSKAYSQVYNGKSRHIGLRHSYVRDLISNGIISIMFVRTEKNLADPLT
KGLTKDMVLKTSLGMGLKPISN
>Copia2#LTR/Copia 119-4084 Wised via estwise with Copia4_AG.LTR protein [Drosophila fruit fly genus]
MSSSINQIEKLDDENYSAWAVQMKSVLIHAELWGVVCGRVVKNESDSAELKALFDAKDEKALASIMLCIKTSQINHIKNC
ETAVEAWQRLSEIHTPSGPARRICSLKQLLHMRMSETEVVSSHVNNFCAVVEKLKEIQLVIQEEVLSILLLSSLPESFES
FVVAIETRDELPTLKMLKIKLQEEGQRRMANEEHSAKSEQSAFGIRSAKQKAKSDIKKSVQVNNQQLINGKRTVNCWNCG
RSGHKAVNCMYRQRKGEHRESENLNTEKSFSVLCSTVQLGELPKNMWCLDSGATAHLCGERSMFKSFREHKERILLAGNK
YIMADGRGTVKIAWRNSSFELIDVLFVKNLQCNFMSVSKAIENGFRVSFENRRGILKNDKNKVVLIAELQSDLFMFQNER
KVESACFVAQTNLMRKWHQRFGHLNFASLNKMIKQEMVLGLKKKYLSGAKENDCLSCAKSKICVKSFPKASGNRTNEVLE
LVHSDICGPMQTTSVGGARYFVTFVDDKSRYMFVYFIKTRDEILAKFKEFKAFAENQSGKKLKAIRSDNGREYLSKAFQS
ILTENGIKRQLTVPHTPQQNGVAERANRTLVEMARTMMIHAGVGDSLWAEAINTAAYLRNRAETSALSDVTPFESWTGRK
PYVSHLKIFGSKAIVLNKSTKRKFSAKGEENILVGYSDASKGYRLFNPIRKNICVARDVIVFENDQDDGMTAGQAVPSPD
VQLVEMQHLPVCVAEGKKQDDVFQVSDKHVDDVASVEQHRFRGRSRHPLKTMKPPKSEDLDGQRRFILVNLEDYENNTTW
STAXSTDEVPIPTRXKEALTIRNFEEWRTSMQKELESLRANKTWSLVDLPAGEKAIGSKWVFAVKRNKMGKVERFKSRLV
AKGCAQRYGVNFTDTFSPVARYSSIKLVIALAVENGLYMHQMDVSSAYLNGDLHETVYMRQPEGFIDERYPKKVLKLHKS
IYGLKQSGREWNKLLNEVLQKIGFSSCPSEPCVYTRNSGKSKNLVVVYVDDLIIASSSKEELCDIKASISKEFDVVDGGE
LRHFLGIEIERDGETGGIRIGHKQYIESLLNDYSMQDCKPNLIPLEAGFEVKCDKADCQKVNQVSYQSLIGSLMYLAITT
RPDIMHSVIKLSQRNSDPHKEHEAGAKRVLRYLRGTADLQLHYERTGVPIHCYVDADWAGDTTDRKSFTGWACIAAGAAF
TWDSKKQSVVSLSSTESEYVALSMAAKEVAYVRKLVNEMGFGETQATKVYSDNQSSQCLVKNDTFHARSKHIDIKYHYIR
ELYKNNIIEVNYVPTENMMADVLTKNLNRFKHEKCIQGMGLN
>COP21_MT#LTR/Copia 70-4392  [Medicago truncatula]
MSDIPPSENSPLSSISSPITVHSTTNPDPCVIHHSDNPSTVLVTPLLTGDNYGSWSRAVTMALRAKNKFGFVDGSLTIPK
KKEDILTWQRCNDLVASWILNSVSTEIRPSILYAETAEQIWSDLQDRFSQSNAPKIYQLKQSISALKQEGMYVSLYFTQL
KSLWDELNSIALVNPCICGNAKSILDQQNQDRAMEFLQGVHDRFSAVRSQILLMDPFPSIQRIYNIVRQEEKQQEINFRP
VPAVESAALQTSKAPYRTPGKRQRPFCEHCNRHGHTITTCYQIHGFPSNPSKPQKKTETSPSTSANQLSSAQYHKLLTLL
AKEDNVGSSVNLAGTAFTCIPFSWIIDSGASNHICTSLSLFSSYYPVNNQISVQQPDGSQALVKHIGTINCSPSLILTNV
YHVPTFKFNLMSVTQLTESLNCDAIFSSSGCVFQDQATKKMIGRGSARNELYYLNQDLVSNKHDKDHYCLSHPLSSLFSS
KHCNKFDLWHLRLGHPSMSRFNFIVKNSPEINANKDFSCEVCPRAKQPRLPFSLRTTNSSHCFELIHVDIWGPFSIPSNN
GSRYFLTIVDDYSRCTWLYLMQHKSETFTMLVHFFNQINRQFNIKIDQINSGNGDIFLPQLQTVRSDNGLEFLSKQMQTW
FHDHGIIHQRSCVATPQQNGVVERKHRHLLDVARALRFQANLPLLFWGECVLTAAYLINKLPTPILKFKSPHQVLLGSPP
SYSSLRVFGCLCFAKNMNIQHKFDERSKPGIFVGYPFNQKGYRIYDMKTRQIYVSRDVQFHETVFPYQDIQSPPFNNAIS
INTQILDNEFDDLFTGSPTHPNIPPENSHNDNSNDTIVTISTPEDDASSNPPSFSAESLSNNPPSTEMNPPNHRHSQRIR
NPPIHLKDYICKINNVTSKINFPLENYLSLSNLSNSHRAFLINIIENKEPKSYSQAMKSVEWRDAMAKEIQALESNNTWI
LCPLPEGKSAIGCKWIYKIKYHSDGSIDRYKARLVAKGYSQVQGIDYHDTFAPVAKLVTVRLLLSIAAIKNWPLYQFDVN
NAFLQGDLSEEVYMKLPPGFSHKKKPCVCKLNKSIYGLKQASRQWFSKFSTTLIQKGFRQSISDYSLFTYNCDQTTIFVL
VYVDDIIITGNNENAISKIKKFLAQSFSIKDLGNLSYILGIEVSRSKKGIFLCQRKYTLDILSDSGMTGCRPSDFPMEQH
LRLRPNDGTPLSDPTVYRRHVGRLLYLTVTRPDIQYAVNTLSQFMQSPYSSHFDAATQVLRYLKGSVGKGLFLSASSSIN
LVGYADSDWAGCPTTRRSTTGYFTMLGSNPISWKTKKQPTISRSSAEAEYRSLATLSSELQWLKYLLSDLGIDHPQPITI
YCDSQAAIHIAENPVFHERTKHIEIDCHFVREKIKSGLIAPSYIRSSDQLADIFTKPLGGDAYKRILGKLGVIEISIPPP
T
>ATCopia97#LTR/Copia 83-3132 Fragment (ca 270 AA internal deletion), via tfasty with ATCopia45_112-4209, 3 frameshifts and 2 stopcodons. [Arabidopsis]
MGDIVLVTTCSKLKETSSVSIQCPLLNATNYNIWTMRMRLLLKVHKVWDTVEPGSEDVDKNDIAKALIFQSVHESLTLQI
GELETAKEVWESIKMKHVGVERVMEARLQTLMAKFEKVKMKETDTIEDFAGRLSEITTKSAALGEKIEAPKLVKKFLNSL
PRKRFIHIIASLEQILDLNKTSFEDIVGRMKVYEERICDEEEDQANEGKLMYANHDSQSYQGNGRGRGQRGRSRGRGQFG
YQGYRQERDTSKVTCYRCDKLExSCLEAYEDANYLWGEVVRHATYLINRVVTRVLTNQTPYEAYKGRKPNVEHIRVFGCV
GYARIDSPYLKKLDDRSHALFHLGTEPDSKAYRLLGPTTRKIIVSRDVVSDETKILWWNDLGDESGEESGTFFLGFEAFG
NNGLRREDEEYASETSENSIEEEGTTRIGEIRGTEENRETETMIQVEDQALVNTxPVLRRSQRQVSRPKYLKDYVLLAEE
ESEHLLSIINEEPWDYAEAKETREWRACEDEITSIEKNKTWDLVELPQGAKPIGLKWVFKLKKNADRSINKYKARLVAKG
YVQRHGIDFDEVFSLVARIKTVRFIIALAASNGWEVHHLDVKTSFLHGELKETVFVSQPERFTEKGSEGKVYKLNKALYG
LRQAPRAWNNKFNKILRELKFIKCSKEPSLYRKQEKVDLLLVAVYVDDLLVSGYSLKLINDFKKGMSSKFEMSDLGLLTY
YLGIEVIQHNGGIMLKQWRYAEKILDETKMSDCNAVHILMDSGLKLSKAGTEKGSHDSETEKNIEPKEYRRSIGYLRYLP
HTRPDLSYCVGVLSRYMQEPKEGHGVAMKQILRYLRGTTSYGLTFTRGDNSGLIGFSDNSHNVDEDDGRNTTGHIFYLDG
SPITWCTQKQENVALSSCEAEFIAATEGAKQAIWLQELLGEVTGKACKKVMVLIDNKSAIALAKNPVFHGRSKHIHKRYH
FIRECVENDQIEVEHVPGEEQKTDLLTKALGRIKFKEMRELVGVQDLSKCDFKLKRV
>ATCopia39#LTR/Copia 39-3280 via tfasty with ATCopia36_101-4170, 1 frameshift and 4 stopcodons. [Arabidopsis]
MAQDLGMKTPVTKRDTKKERKGSQKSKLGMATETAEEVKKNLVFIARQEIKEPSGGNTWLIDSGCTNHMTPNEKLFTKIN
RDFKVPIRVGNGAVMMSEGKGDIEVMTRKDKRGIRDVLLVPKLGKNLLSVPQMIINGYQVTLKNNYCTIHDSARKKIGEV
EMVNKSFHLRWLSNEETAMVAKDEATELWHKRLGHTGHSNLKILQSKEMVTGLPKFNVEEGKCESCILSKHSRDPFPKES
ETRAKHKLELIHSDVCGPMQNSSINGSRYILTFIDDATRMVWVYFLKAKSEVFQTFKKFKNLVENNANCRIKKLRIDRGT
EYLSKEFSEFLEGNGIERQLTAAYSPQQNEVSERRNRSLVEMARAMIKAKDLPLKLWAEAVHVAAYAQNRTPTRTLKNKT
PLEAWSDSKPSVSHMKVFGSICYVHIPDEKRRKWDDKSKRAIFVGYSSQTKGYRVYLLKENKIDISRDVIFDEDSKWDWE
KKEVIKHYDMSREPEDRGDQQADEQNSRDNEARGRRNVLPSPLNLNFDSPGGSTSQPNKKTRSINDILLTAPFADVxYxG
ACESCYTGAEEPAVFEEAAKHEEWTQAMEExILMIEKNKTWELVKRPTNKNVVGVKWIFRLKTDAEGNVVKHKARLVAKG
FTQQHGVDYLETFAPVSRHETIRLILVVAAQRKWKLFQLDVKSAFLNGTLEEEIYAEQPLGFEEEGKEDHVLRLHKALYG
LKQAPRAWYSRIDEFFQRENFTRSDNDHALYTKEVLGKLLVVCIYVDDLIVTGDDEEMVEEFKTAMKNEFEMSDLGLLNY
FLGMEIVQSLEGIFLSQECYARKLLKKFNMEDSKIMSTPLLPQRKDQEEDESLADSKVYRSLVGGLLYLTSTRPNLMFFA
SYLSRYLKEPKIKHFKEAKRVLRYINGTIDMGMRFTSTMEPKLIGHSDSDxGGCREDLKSTTGYCFSIGSAVFTWQTSKQ
ETIAQSTAEAEYMALCAATNQSMWLKRLLEDLKFTTQEGVPIYCDSQSAIAIGKNPVQHRRTKHIQIKYHVVREAERNGD
IKLLYCRSEEQLADILTKALGRQSFEGFREKLGLSCKMARG
>ATCopia22#LTR/Copia 64-4503 [Arabidopsis thaliana]
MADAPPPPPSVIEVRRTISPYDLTAADNSGAVISHPILKTNNYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPDLEDW
LTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLATCKQEGMTVEGYYGKLNKIWDNIN
SYRPLRICKCGRCICNLGTDQEKDREDDMVHQFLYGLNETKFHTIRSSLTSRVPLPGLEEVYNIVRQEEDMLNNRSSNEE
RTDVTAFAVQMRPRSEVISEKFANSEKLQNKKLCTHCNRGGHSPENCFVLIGYPEWWGDRPRGKSNSNGSTSRGRGRFGP
GFNGGQPRPTYVNVVMTGPFPSSEHVNRVITDSDRDAVSGLTDEQWRGVVKLLNAGRSDNKSNAHETQSGTCSLFTSWIL
DTGASHHMTGNLELLSDMRSMSPVLIILADGNKRVAVSEGTVRLGSHLILKSVFYVKELESDLISVGQMMDENHCVVQLA
DHFLVIQDRTTRMVTGIGKRENGSFCFRGMENAAAVHTSVKAPFDLWHRRLGHASDKIVNLLPRELLSSGKEILENVCDT
CMRAKQTRDTFPLSDNRSMDSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQ
FDTEIKTVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLI
NRTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRD
VIFQETEFPYSKMSCNEEDERVLVDCVGPPFIEEAIGPRTIIGRNIGEATVGPNVATGPIIPEINQESSSPSEFVSLSSL
DPFLVSSTVQTADLPLSSTTPAPIQLRRSSRQTQKPMKLKNFVTNTVSVESISPEASSSSLYPIEKYVDCHRFTSSHKAF
LAAVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNC
QKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQ
APRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLG
IEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHT
LAQFMQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQPT
VSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIA
TSFVPSHKQLADILTKALGEKEVRYFLRKLGILDVHAPT
>ATCopia59#LTR/Copia 38-3918 Wised via estwise with ATCopia10 protein [Arabidopsis]
MVMTMKVEIKTFNGDRDFSFWKIRIEAQLGVLGLKNSLTDFKLTKTVPVAKKEEKESEYEDDASDIKQATEEPDPIKFEQ
SEQAKNFIINHITDTVLLKVQHCKTAAEIWATLNKLFMETSLLNRIYTQLKLYSFKMVDTLSIDQNVDEFLRILAELGSL
SIYVGKEVQAVLIXNLLPSSYIQLKHTLKYGNKTLSVXDVVSSAKSLERKLSETQESNKNVSMALYTTDRGRPQVRNQDK
QGQGKNRGRSNSKTRVTCWFCKKEAHVKRDCFARKKKLENENRATMILLGDDHTVESRGCGTIKLNTHGGLIRMLKNVRY
VPNLRRNLISTGTLHSLGYKHEGGEGKLRFYKNGKTALCGYLMNGLYILDGHTVATETCNAESAKNSTKLWHSRLGHMSI
NNMKILXANRLIEKKEFKDLDFCEHYVMGKSKKLSFNVGKHVTEDILGYVHADLWGSPNVTPSISGKQYFLSIIDDKSRK
VWLMFLKSKDETFDKFCEWKEIVENHVGKKVKTLRTDNGLEFCNNRFNDYCAKTGIERHRTCTYTPQQNGVTKRMNRTIM
EKVRCMLDESGLEETFXAETAATDAYLINRSPASAVDHNVPEQLWLNREPGYKHLRRFSSIAYVHQEQGKLKPRVLKGVF
LGYPQGTKGYKVWLIDEEKCVISRNVVFNEDSVFKDLQSGSKDEDETVTQESQIEIETPPKSELETQNQVQGGATQVQLN
DSEDEYNDVEGVVTXSNLKTYQLARDRVRRTIRPPAKLTDYTQFAFALVMAEEVESEEPVCFHDVKEDKDWEKWHGGMIE
EMDSLLKNATWDIVDKPKNQKVISCHWLYKKKLGIPGVELPRYKARLVARGFSHREGIDYQEVFSPVVKHTSIRILLSLM
VKEDMELEQMDVKTAFLHGELDQTLFMEQPEGFEVNPELDQVCLLKKSLYGLKQAPRQWNKRFNAFMMDQKFSRSVSDSC
VYVKEVSNGECVYLLLYVDDMLLAAKSMTEIKKLKKVLSREFEMKDMGAASRKLGIDIIRNRSEGTLCLSQTSYLERVIQ
KFRMDGAKVVNTPIGAHFKLSSVHNDDERVGSEKVPYSSVVGSLMYAMIGTRPDIAYAIGLVSRFMSKQGEVHWTAVKWL
LRYLKWSIGLNLMYTKGFDFKVQGYCDSDHAADLDKNMSISGYVFTVGGNIVSWKSCLQPVVALSTTEAEYIALTKAVKE
AMWIRNLLDDMMLGTETAEVXSDSQSALCLSKNNAFHERTKHIGKKYHFIRDIIEAGEVEVHKIHTTRNPADMLTKGIPV
SKFEAALEFLKLLR
>ATCopia81#LTR/Copia 83-4489 Wised via estwise with ATCopia22 protein [Arabidopsis]
EVRRTISPYDLTSADNPGAVISHPLLKGSNYEEWACGFRTTLISRKKYGFLDGSISKPEETSPDFEDWTTIQALLVSWIK
MTIEPTLRSTISHRDVAQDLWEXLKKRFSVMNGSRLQQLKSELACCKQRGLAIESYFGKLTRIWDNLATHRPLRVCRCGK
CTCNLGAAQEADREEDKTHEFLNGFDEQFRAVRSTLVARTPIQPLEEVYNIIRQEEDLRVPVEESPSMTAFAVQSKPRLP
TDEKEKSFFCKLCNRSGHTAERCYAVIGYPEWWGDRPKGRTLQGKGRGGSTSRGGRGRGASQEVANRVYVPNVENVTTEQ
ANHVLTDDDRSGAHGLNDTQWKMIKSILNAGKQPSTEQQTSMSSLSPWIMDTGASHHLTGRFETLTNVREMPPVLIIMAD
GREQVSYKEGSISLGSHLVMKSVYYVEELKTDLMSLGQLMDENKCVVQLADRFLVVQDRISRMVIGCGKRVGGTFHFRST
KIAASAATKEIKSFELWHNRMGHPSTQVVGKLPFVSASVSSSSLNKPCDICLRSKQTRDSFPLSMNKSSNCFELIHVDLW
GPYRTPSHSGARYFLTIVDDYSRGVWLYLLTTKSEAPEQLKKFCALTERQFNTKIKRIRSDNGTEFLCLTKYFLTNGIIH
ETSCVATPQQNARAERKHRHILNIARALRFQASLPIEFWGECVLTAAYLINRTPSSVLDFATPFERLFNKAPTYDHIRVF
GSLCYAHDQNKSGDKFASRSKCCVFVGYPYGKKGWRLYDLEKLEFFVSRDVVFSETQFPFAPINHLQASDESKALWAPIS
EFLENDDCGLRKPNPIRSVALGPVSSSQLSTPISSANDTRRSENSDGDNGGARQLPEPTAGDKILPSTAPNPIPVAPTSR
LTPAAVVMPPVPTEELLGKGKRNRTPSVRLKDFVVPHAPKPKQQEEINLVCAENLTHNVDVHRFSETHVAYVAAVLSNLE
PRSFKQAMQEEKWRNAVGSEYGTLEENNTWTIEDLPPNKKAIGSQWIFKVKFKSDGTIERYKARLVPMGNKQIEGEDYGE
TFSPVVKMGTVRLFLDIAVKKGWIIHQMDVHNAFLHGDLEEEVYMKLPPGFESVDKNKVCRLRKSLYGLKQAPRCWFAKL
SSALLEYGFQQLRSDYSLFTYAQGTTRLNILVYVDDLVIAGSSLKATESFKAYLSSCFHMKDLGELKYFLGIEVARNASG
IYLCQRKYALDIITETDQLGAKPAHFPLEANHKLALSESVLLHDPKPYRRLLGRLIYLGVTRPDLAFSVHVLAQFMQNPR
LDHWLATLRLVRYLKSDPGQGILLRADGNFQVTGWCNADWDNCPITRCSVTGYXVQLGDSPISWKTKKQKTVSLSSAEAE
YRALAKLVQELIWIKMMLKTLGVVHTXPMLVQCDSKSAIYIATNPVFYEHTKHIEIDLHFVRDEVLKREIQLCHVDSFSQ
LADILTKPIGKDGFRYFKSKLGTLNLYSP
>ATCopia67#LTR/Copia 134-3658 via tfasty with ATCopia21, 5 frameshifts. [Arabidopsis]
MAAIDAIDTTQALLNVNMSNVTKLTAGNYLMWSLQVHALLDGYDLAGHLDGSLPAPPPTIEIIGVVTPNSAFTKWKRQDK
LIHSGLIGAISLPVQSTFSRALTTNEIWKTHANIYAKPSWGHIQQLRIQLKQQTKDINTVDEYMQGLITKFDQLALLGKP
LQHEKQVEHILLGLREDYKSVIEQIEGRDSPPSIPEIHEKLLNKENKLLSTTTSFSPVIPVSADIANNSSCKQNNRSVQP
WQSQTNNQQFQRNTNNNNSRFSKGYQGKCQLCGVQGHSAKRCLQLQQHQQNNSRNVSYPPWQPNANLALASPHPANAWLL
DSCATHHLTSDLNNLAIHQPYPGDDSVLIGDGSGLQITHTGLLSLPSSSRNLTLQNVLYVPHIATNLISVYRECAILSHA
GMPKTFWSYAFTTATYLINRLPSPTIAMETPYQKLFGSSPNYGKLRTFRCLYFPWLRPYKLEERSTPCVFIGYAPTQSAY
LCLQTSTGRIYVSRHVKFDEQVFPFTHSTPPSDKSLPTSSNSPFIPVSQIPVTVPLAPMPLGPTSFDLHQSPRSPATSTE
TALVDTSSSAEIQPSSSSPNLAHTENPETQNSNSNPSPITTTTNNQQSKTQPTTQTNTSTSSSQPNVPPRSVDNAHPMKT
RRKNHITKPNTKYNLSVALSTHIKPEPRNVNQALNDPHWRGALSDEIDAFARNQTFDLVPRQPQMNVIGCKWIFKNKFHS
NGSLNRCKARLVAKGYNQQFGRDYTDTFSPVIKATTLRLVLDVAVTRSWPLQQLDVNNAFLQGTLNEEVYMEQPPGFVDA
DNPSHVCRLRKAIYGLKQAPRAWYMELKNYLLSLGFRNSLADTSLFVLQCGTQFVYLLVYVNDIIITGNSDNGIKRVLQL
LADRFSVKDPEELHYFLGLEEHRTPQGLHLSQRKYILDLLHRHDMINAKPVSTPMASSPKLTTNSGTTLSDPTTYRQLVG
SLQYLAFTRLDISYAVNRLPQFMHRPTEDHSQAAKRVLRYLAGTTTHGIFFAAKNTLTLHTFSDADCAGDTEDYVSANAY
IVYLGSHPISWSAKKQRGVGRSSTEAEYRAVANASSEISWICTLLSELGITLSAPPVIYCDNVGATFLCANPVFHSRMKH
IAIDYHFIRGQIQTGALRVPHVNKKDQLADALTKPLQRARFLELRDKIGVAKAPPS
>RTEX-1_VC_pol#LINE/RTE-X 1029-4826  [Volvox carteri]
EANRRYEPLRIVQWNIRGVTDWKLEQRELLRLALRYDIVVLTETHGSLVGRLSRLIPNGSCCYLAGKSRERGGVCVWVHQ
RIARHVTHCTSTDAPRGMNSVWLRIHGEALNFGGNGLVIGACYAAPLGSRAYTANGRRPQDSVTRRVMDRVRSLVRRYQQ
PGDEVLLMGDLNSRVAEIRELPDVDGDAELADYVQAELGQANLLRSIPPRLSEDKTDNVFGRALATLCQEMEMVVLNGRV
QGDLQGACTFWSPTGNGSSMIDLFVASPALFFKSNQLRVLDIPVALTGERVGSLMSDHCPVSLELGVLREGVNPTRRDKS
TTRFEVQHKGRYESMFAADDAPAVRRISDAVSKLGGELDSTAFVEVLTRACSSALERAFCKRCPAPKRVREEKDAPWWTQ
ECAAARSDMLLQKAHMRAQGLLADEQARHIFTLLRSRYQRIRKEAMAAHRVSHFTSFLEECKGNPRALWRQLNQGATPDC
PIRDVNSWRDYFDALYNDEINAFNEVRADYMMNLVNGCSLTIPRGWAGESCLARNQRVAAAAALSAPFTLAEVIAALKML
GNNKSPGLERAPAECYKYATRKVGEKEEMVLAPYLLRLLEHIRSTGDYPRQFEISALTPIHKKGDVMDPKNYRGLAVGGA
LSKLYALLLDRRLKAWGERCGARSPYQGGFRPRRGTTQNLFLVRHLTDRCRKDFVNVPGQALFVCQIDFEKAFDRVNREL
LWVRLEERGVTGSALDVIKRCYNRVEMRVQVDGAKGEAIPSTQGVKQGCPMSPTLFGFFVEGFADYIDALDVALPDAMAA
HDTPSVEGRRVPLSLYADDLSLFAMSLRRLMSLLRALREWSEAFGLTVNVQKCELLFFHPNGQVRRQVYALSGYNLVTMR
ALEEGLPIFRPVTWKTRARYLGLHFGPDSGFASCTDELFSAGQRAMFALRNKLRRQGLLLPSVGMKCFNAQVRSVLSYGS
QVWGADQVLAMLEKGYPANEAPRSCYFDVAIRDRMVKLQIFFMKQLVGTSVPPLQLLFMELGQMPLQLHWAESVFRFWNS
LVEDTSSVYHSAFRQEIRLALVTNLQFDGWGSKVIRILNHLEHDWGEEAVGGGIDMRVRRYSACKLDVEALMDTLRTRVN
DDWANDRLAVDPRVFVTDGRKPGVKMGRHKHWMGPPKPYAGYIPPAHHRALIRFRLCVSDLAVNSESNRAREHRVCAVCR
SNGAIEDEKHFLVECPAIMSARQKIWDLGVPVNANIRDIMQVDDQRGLAKAIFEMFRSRHEHLTT
>RTEX-1_DR_gag#LINE/RTE-X 1-792 Fragment. [Danio rerio]
SFGTPSHIIIHTGTNDLRAQQERVGQLVCRVAEKAAETCPNAKITISTLLPRRDIHPDTINRVNADISRGCALLPNVHLT
HHTSITVRDLYDHVHIKKDKVNVFAKALKDTAWGRQTSAHTTNRLSPPYHMENMKQPPPGHHWGPPPHTRHFQPTQAQQQ
RPRPSSGHSQKTQTMPGPPQRETPTAGHHQRPTPSNRLNPRQVNNSRRSPQHPTTSTTAADSTPRPALLPQPRNYAQALK
GPAKPLEMGEIRQLLQYISAQLT
>RTEX-2_ACar_pol#LINE/RTE-X 2620-6009  [Anolis carolinensis]
LDKKQTGLELVSWNLAGWENKMADKEFIRTLQKFDIICLQETWTHELNPPFLDGYKAFSQPAVKKSNKGRGSGGLVSFVS
IELAGEAQMAGFGLQNNYLLPVQINTDKGKIFFCINVYFPPANGLLVITKIWEDLMFLLDQIHLKAPTALTLICGDFNAR
IGDASAGFLQPLSLDLEDIFLTSHTSVDAKYNQQGFKLLKFIFHHNLYTLHGSPKDISKGYYTYLSNRGGSVIDHIMVSP
GLFPQVSSFDILERTESDHFPLVVSLGPIFEQTELSRTENLTGELLGERRVKWSIELSSSITEKLHSNYLMSIHQNLCNK
STNHLELFQQTVNKLRPCVTTFTYNNPQTTMYGWFDAECRAAKRELANKIRESRQKPSRKNIENVTKCRAKYKNLLKNKK
DEHAKSKWQELEQALTERKEDKFWELVTRGIQGVRYTSEASITASTWIKHFSSIFCPKTSTSEVAGLDNVNDLSTLPEWD
AVSSGEVKSLIASLKPKKAPGEDMLPPELFKENPEWWSPFLASLFTSINSSGQMPGGWKMSIIVPIYKKGGRNDPQNYRP
ISLLNITSKLYAQHLLQKLTEWLQERQIVHEEQAGFRNGYSTIDQCFTLNHIIRKYTKQNNSHVFAAFIDLSAAFDSINR
NRLWGKLQNSDIDRRLLRLIQELYTNTEMRVRVGRNGSLTEAFSTTSGVKQGCLLAPTLFNIYVNDLVPCLAKIDSPSPT
IRNRKIFVLMYADDVVLLSLSRLGLKNLLKAFSKYCQEEYLSINYSKTKVMVFGRHCPRYKWTLDQHDIEQTHLFKYLGI
VFSESLSWKHHRDAVKLKAEKTIGALMKFFYTQGGQLIEPAQKIFSNQVLAQMLYGAEIWGLDTNICKTLEILQNKFLRK
LYSLPSGTPAALLCTESGWPTVKAKVDCAQLRYLKRIATLHNDRLPALCFEEMRNRQHKKFGLENLLLNYNLPELNSALD
MNKRQLRDWLFWIDSRRTLQSTRNSKFSPWFPFLKTEHFRARYLIKLKPPSLRIAFTELRFQVMPTAVLDGRYHNVPWEN
RLCICGQSQVEDIVHYMLVCPLYSAPRERHLEPLLTHGKGNCLAETVHFLLSDTNNYVTHKVALFALSAKKIRKIELDKI
AINCRGDSKD
>RTEX-3_BF_orf1#LINE/RTE-X 179-2674  [Branchiostoma floridae]
MGDHAEDHAKTHAKTPKRKTPGTKFWNVNLNQLPADESLAFDYEDQDKSRFCGVKLRSKQLDKWITAHKDAFNETFERTK
ETTVTWKSTPGITCMTVQTTTATRKSGKGLLSVHFYHKKHGLMVQGQCTKWWMNILYPELLVNINAQVDMQTRSTIKDGV
LRVRDAIDNFPTVTLESTTPKQVFNSSVHETPTLPKCANPRNLQDLQAPVSEDMEEEIQIVFDTSAKHSGNIEVPVSSDA
EDQGPSRIEKRAKQVSDTKNGEQSELTTKAVDMPNLARLTAVEKSQRISDAAFGDLQKQFVDMTHNLNALRDELLTKERE
REESQTNMLKELSTKVEAAQKSLESHIKKVVNKLQTNICHVQKDLVSQREELAKEKNATVQEMTIERNIWMERNRGLSIK
VDALSASNAELQQAITIQDSELQYLFDRLKQIEENRTCRGCTKPTHTDMQNLNNVHDNDIPGDKQDNNAATNQTIVKQIA
NMLPSAHDNATIATQSREVPSPATSVKESATNTSTGSQHQRYEVRIFADSIFRDVDVKRAFNGKSTRLVRTSTVTAAIDC
IKQINDSTTQQVILHIGSNDLDNSKLRNDSVSTTLNNTRRLLEVTKASFPKAQVAVSQVLQRGLNDNSTLNINIKNYNQE
VLNLSRSGNFKYIKHRKLTQDRHLYLPDQIHLDPNSGTKMLVSDVKRTLYPASGTGAVRQSPAWTDTQAARLPASVNQRT
PMRWQNGPSFPRPVPVPVTRSRKPPYQPPTVKQAHRNTAVGTGQAAPGLSKGANIGVPGQLGPTTRSGDTASGTGQVVRP
AWWKAGKNGHPSPQWRQLGHRLRKVWNILIS
>RTEX-2_VC_pol#LINE/RTE-X 1563-5360  [Volvox carteri]
GARRGGNSIRFLIWNIHAFSAGKFDQIKAIRGLLNHDVIILTETKAPVNRTRAKEQLVLQGYSHLACTRAPRTGSRRSGG
VSVFVRDELAPCVREVGLTNTPVGVEIVWLRFHSVLPGGRALLLGAGYCSPQGSSVYSSTDGSGLAYSEVPDAVFGSITG
ELDRLRCMGDEVLITGDFNARTAAILDLPGVNGIGAHSLVGVPRKNRDSGLNCFGRRLAQMCLDTGLAIVNGRAPGDVPG
GFTYSNSTEGHSSIDLCLASYGLFEQINTLKVLRSYLWGESNVLSDHHPLILRLHAVLRPGAARGRKPHLARERIPIFDI
SRKGRFTELFREPDGIITETINSLKEKLVEGAPCDESMNDLRTLINKCARETFGGARGMEKSVKRDWWNEDCAAAWNDMM
SFRKEVRDPVSGKLPDLHRTTWKAKHRAFKKARKAAIQEFEMEDMRRRIKDARFNPRGLWTWLRGGKPPPCGISDINAFT
EHFSKVLNGTGETRQCRNEGIQFRWLDEDQVTHRRELAAWLNKDFTEDEIASGLKAMRNNKSAGLEGTPAEYYKYAIRET
EGQQPVLVLAPYLTVLFNRIYGAEYPREFTTSTLSPVFKKGDVSCCDNYRGIAVGGPLSKLYANIIGRRLNNYCEGNRLR
AVSQAGCRHGFGTEHHLFTLRHLISKHTVAGARPLIIMQIDFSKAFDSVDHETLWDFLMSYGLHGRILDSLKASYADVKF
RVKLGNKLGPEFKVGRGVKQGCPLSVTLFGLFIEVFAHYIDAHDANCRVCLPSRWSTLREQSVSLAGGDLTNLLFVDDVS
LVATGHDRAECLLGLLEAYCKATGMAANAAKCEVLIFGGATRERKRLVEAEYRLGGAGLRVLTGNETARYLGLHYGPGVQ
FSACTKQLLTAGRRATFGLSTLCRDKKITTPKLCMSLYNTLVVPVFSYGAQVWGPDFINVNFEGAMANPMVQEQRAYMRT
VVGARSPTMVSLYRELSQRPLQFHWTNLVLRFWNSVVKRPGTLCHRAFVADLELALGGATECWASKVLAFLTSLGVEPPT
NTRGNDLISYYTTLKLPVESILKVFAKRLDARWECPNTLGDPRVFPIGITGAKACRYMNWMGAAPSRGARLDWLEHTKGT
MPQRLHHVLMRFRLGCWELEVNRPNGRERTARTCRLCDCGAVEDELHVFEECPAYKSIRAKYDGDLVLTGRSMRTTMTEA
PPLALARYLSEIWEARHVALRRFALKRTRENEDDLPRTRINTNTTSMAPPAFTDTPALVCGTCNL
>RTE-2_NVi_pol#LINE/RTE-X 692-3677 via tfasty with NAVIRTE1_pol, 3 frameshifts and 3 stopcodons. [Nasonia vitripennis]
GKKKGRGKEKEKESLKVLSWNVAGLKGVDEEGWGFLREFDVICLQETWTGGGEEKSIRKRLQGYEVEVREAKKGGSRGRL
KGGMIMAVRKRSKEDKVEWMEGETGEFIGGKIRIKGEEWWIGSTYMRDEKKKNYEEIEEMLERAGGGGRILWCGDLNART
GTEGGSLDEEGNEERRESKDRTVNKEGEELLDRLKEMGLSILNGNIEGDEEGEITYVGGMGCSVIDYGIVNEEGRRKIKR
MKVKDRIESDHGALEIEIDTERKVEVVKEETSRALWTEKAIREYRSWLEKGGEAKSWREMKVKIRNAIQTKRGVRKKNEK
NRWWDEECRKKRAEMKRAKKGLEEMGSTGTHRxRENxRTCSVEHVExTEVREIIRKLKEKKAPGDDGIQNEAWKYGEENL
VEELKEILGKIWKGEGLPEEWRKGTVKPIFKKGDKGECKNYRGITLMDTGYKIYAELIRGRMEKKLEEENRLSDTQMGFR
KGRGTIDAIYVVSKAVEQELRKKGGKVYACFMFADMKAAFDKINREEIWRMMKRLGVSRKIRERVEEIYEKTECEVNIGE
RKVGSFVTQKGVRQGCPLSPLLFNVAMADLEVEMGKIQEGGIILGKKKKLWSISYADDVVLLATNASGLKQMLKRFKGFI
RRKGLELNTEKTKIMIFRNGGRRKREEKFEWNGEEIEVVKKFEYLGYTMKENGKEEEQIKKVKGKAIAVLGTVWGIGEAI
FKESWKMRMKLFDALVQSVMEYGAEIWGWKGQEELEKIQRRYMKWVLKLERTTPAHIIHWETKRFKLETRARKRAVRYEG
KLRKAKENSLLRECWSLLKKEGEKEIRRGRGKDVRRSELEKCGISVEEYNRRVEEGEGVEEEIERINKDTQWQKWREEIR
GSKYAEEVRELLMEQGEIPEYLGETGEKRRGALEKIARFRLGSETRGNHYWRKEEDRKCRMCGREEETLRHVMEECEETK
ISGKKWKEICGGKRSQIGNLNSIIWKRKNKEKVTE
>72133877_Spu_pol#LINE/RTE-RTE gi|72133877|ref|XP_788695.1| PREDICTED: similar to predicted CDS, reverse transcriptase family member (1O881) [Strongylocentrotus purpuratus]
MTDTNKQRPPVPSSSFVPDQGGGPIKQGAGGAKNPWVRTGHHWKLNIATYNVRSLLQEERLLELEEELQGIKWDIVGLGE
VRRRGEELTVLKSGHHFYHIGKKNKSEAGVGFLVHKSIAGNISEIKGINERLAQITIKINKRYKIKIIQVYAPTSTHDDE
EVEKLYEEITDVMKGSKTQFTIVMGDFNAKVGKREEGEESTIGPFGIRKKLREDIRSYNTTMIKSTIEENRSLKKTFKKL
AHGKQKITSLLDSNGQEITDQDQILQRIEEFYEQLYNSNKETEDPGEPQEEIPVVTHWEVQHAINQMKRGKSPGPDNILI
DTIKEGGDTITEELAKLYNACTCMQTRKIPHQWKEATMIILHKKGDKRDLKNYRPISLLSNLYKLYTKIITNRLEKILDN
NQPREQAGFRRGFSTMDHIHTINQLKEKCQEFNIPLCVAFVDYEKAFDSVETYAVLKALQDQGINNTYIKILKDIYSDCY
NTVRMHKASNKIMIRKGVRQGDTGSPKFFTACLESIFKTLDWSSKGININGENMSHLRFADDIVIISHNLNDLEIMLQEL
DDASRLSGLKMNMKKTKVMAGSAKDPKQIQVNGTKMEQVEEYIYLGQRFSLQDKNQDNEIRRRIKAGWRAFGRYSTIMKG
KLPLCLKKKVYNQCIIPAISYAAETWTKTNKWIREQTKVQDILKTVKRRKWNWAGHISRRKDNRWSSAITHWTPYEGKRN
RGRQRKRWRDELQQFWGQTNWHQQALNRGIWKHHAEAFILQWIDNG
>17544228_Cel_pol#LINE/RTE-RTE gi|17544228|ref|NP_500154.1| predicted CDS, reverse transcriptase family member (4C744) (C terminus from gi|1330346 and gi|13324980) [Caenorhabditis elegans]
MLPFLAASPGLGDVRAPAIWLGLVSQPSRTPIITKNSKTKRKTDGSTTRQSSSLGPRSSPLRSAGGQLRKTTRSELKKSH
FHLGSWNAQSLLGPRLASGVEYLKNSTCHVVNLQETRFFSMASIDQPEFQLLFSPKTNSKDLGLGFFVKKCQDLEVINVS
WIGVGIASLELEFRKVKIMVLNVYAPVCKSRSENDAKRFFERLRAEYIQLRKSFKGPIVLGGDFNAATSCSTNDELAPWI
CGNVFGNSNNHGDFFFNFLASTRLFQLNSRFRKRLASRWTFAGKKGVGRTEIDFFISNRIDLVEDVSTFPNLHNLSDHRL
IRSRWVISVKSERDHAFKSRRPPSTGKERDWTLYEDAIKDLRKHATLGSYDSFVKTLRQGLVPLPAHKPHKFSQRTIMIL
QERRQVLESSVPDIAKLRKLSQEARKSITEDLTQKYDSILEACRKKRSSKILNKSIPAEIPLQYLEWPDGSLTANRIEIR
KIVESHFKTLYEAPTSSPSHPRNPNSNPPNSDPVPAILKCEVRLEIRKLKTKSAPGLDNVDAAMLKNGGDTVVDSVTALF
NDILHHNKVPDLWKIADVKLIPKKAKATKIKDFRPISLLPILSKMFSSILTRRLTPTLESYLDESQTKVFRKGRCCADNI
QSLTMLIEKCNEFQLPLLLLFIDYQTAFDKISHSSVVSSLERAGADPAMRKMIQELMEGGQAEITVHDKKLKVNLCTGIR
QGDSASPALFSAALQAILTDCDNELAGVGISVEGRHIRRLEFADDVVLICSTPEEVQERLEILDRISSNYGLKINQSKTV
LLKNKFCRSQDILFNGSPIIPVPGCRYLGRWIDISGSIDEEISRRIRAGWGALVGIKEVLRIMPNKERIILFKQNVLPAL
LYASETWTCNAGSTLRLKRTVTGLIDAAEIRGWNFNLDRYLLAKQSRFAGHILRRDPNRWTKICTEWDPSHNKNWKRAVG
GQKKRWAKDIDEEYARFHHNSAMSGQVVVGRRRLGMLTPKVPWLSIARTDREKWKEFVRSCLAT
>RTE-2_PPac_pol#LINE/RTE-RTE 113-2899  [Pristionchus pacificus]
MACLLLATLNCLTLCQDSRIVELEEALIKIKCHVIGLAEVRRPNEASMDLAKSGSVLYHTQRLQNRMAGVGFIVSGDAKR
KVVRFGGLTPRVCFLDIEVSNNSLLRIFQVYAPASSRDDSEYSEFVDQLEEAYHAPVSGSHRYRFVHKIVMGDFNGKIGC
RQLGEGSVGAFGYGDRNIKGQLIVDFCERLKLKVGNSFFRKRPSRKYTWVAPNGRTANEIDFILCPKGVELRDVGVVNQF
DFTTDHRLVRASISFPCRFPRRLNGLGFGDSHLDRNLFKIGLGVEIRKIGGNLEYGKLVEAINGASKIATIVTPRKGCIS
QATKDLIARKRDLKMHSAGLSRLQWLLLNRSIRLSFKNDRERLYLDYVSKAIENGKSYKKAAAKVAVGKGRIHKIRNEEG
GWECTQAGISRAFKTFYNDLYAGDGGSSYRSEKERDPFIPLCIAEVEHALRHFKSGKAPGRDGVTGEMLRAGTDLLAPML
TGVFNNILTGGIPEGFGDSRTILLPKSGDLSLIKNYRPISLLPALQKALTGLINKRLAPVLDNRRSWEQMGFRGGHSTVD
AIHTLKTVVANCADHHLPIYLLFVDISKAFDSVLGEAVFKALERDGVPSEIVTFLASLSRDSKSAIVVNGEEVEITVGRG
VRQGDCLSPRLFTAVLDMAFSRLQWDKKGININGRFLSHILFADDAVLISHDERQIQSMAIELERELGKVGLKLNGDKTL
GMTSKGNAREVRVAGKVVGLKNEVIYLGCGISIDGKDGMEIGRRIQAAYGAFHKHRSFLINRSIPMVHKRRLFNGCILPA
FLYGCETWALTEAQKERLSVAQRRMERWMVGCTVLDHLSNERLRGLTKVEDVVRASLKRKWLWVHKVANDYDLKWSRAVI
EWTPRGPKRRRGRPNARWKDLFMRTVGPTFLRQARSHEWPAMHIRAYS
>L5_pol#LINE/RTE-X 6-2072 RTE group, but L4- and L5-pol seem to share a C-terminal 200 AA not seen in other RTE pols [Theria mammalia]
TKXEPXXRKVWXNHYSKIFGVLSWACSQNFXIDITNLPQWXPVTTGEIKGLSASLSSGKAPGEDVLPPEXFKQFPDWWAP
ILAKLFTQISKAGVSPAEWKQNIVFPIFKKDXKQDPGNYRPISLLDVASKLYGKHLLNKLEDWEKSNNVIHPEQAGFRRG
QSTTDHCVTLRYLAQQSIXXPXKYLYAAFVDLAAAFDSVNRNRLWHKLXGTNIDRRLLFLLQQLHSDXAARIKAGISGSS
TEVISIDQRXKQRRLLAPLLFNLYLNDIIKXLSGPEFFLLSIGSRKISILLYADDIVLLSSTTYVGLKKLLSKLYDALKE
ESLNINYSKTKVMIXRKKPSXFRWAINNQPIDQCWVFKYLGVYFNETLSWKSHTKIVKATVTKTIGAILKFYRTKGGHLI
DPALKLFHSKAVAQILYGAEVWGWDDTQITNLETLQNSFLKNILHLPPSIPAALIRAEVGLPSIRAHVHVAIIKYLKKLK
VSPENHLSKLCYVQLQNCKDWVYKYHRLLQLYSISEDSQVISQAGTNLRDWIFDQNAXSDRLAILDTNFSRRYRIIKSDH
SRSFYLVNLTFPKLRQAFTAICFQTMPTAMIEGRYRRTPLAQRTCICGAPELEDLPHYLLFCPMYLEPRQKFLGVILTSI
HSRTIPEKVSYLLSDTDTYVTFRVSYFALAASKIRAKAILDTTVKTTR
>RTE-3_PPac_pol#LINE/RTE-RTE 95-2887  [Pristionchus pacificus]
MTIFMALLSLATLNCLTLSKDARIIELENALDKIKYDIVGLSEVRRKSAGEMDLSWSNGRLYHSARLPNHTAGVGFIVSG
SVKQKVVRFCVLTARICFLDVAISDGILIRVFQIYAPASIDMLEYSTFIHEVEQAFHQPVTGSHRYRFVHKVILGDFNGK
VGVCEPGEXSVGNFGYGNRNDKGQIVVDLCERLHLRVGNSLFRKRDARKFTWVSPNGRARNEIDFILFPKGIRVMDVDVV
NRLXFSTDHRMVRSFISFPFRFRRGRNRPAKGDAHLEKDLFKFSLEAEMKRVGGRVEYGTVVSAVQTAGKIATTFTPSGK
RVSQKTRDLLIRRRELKIDSVGVSRVEWLLVNRAIRESFKADRDQGYLXYINEAIRMGKGFKRAPVKLAIGRERISRIRN
GNGDLELTQAGIVEAFQSFYNNLYKGDGGIGYREVIERDPFVPICASEVDQVLRHFKSGKAPGKDRITGEMLRIGVDQLV
PTLTTLFNNIIMGNIPQGFGDSRTILLPKTGDATLPKNYRPISLLPVLQKALTGLLNKRYAPVLDRNKSWEQMGFRQGHS
TIDAIHTLKSVIAHCVDYRLPIYLLFVDISKAFDSVFTEAVFRSVEMEGIPSEVVSFLAGLSQGSKNALVVNGSEVEIKV
GRGVRQGDCLSPRLFTAVLDRAFRQLDWSKKGICINGRFLSHILFADDAVIISHDERQIQSMAVELEKVLAGVGLQLNGD
KTIGMTSKPLPRIVKVAGKVVKLQEKVVYLGSGITINGTDDWEITRRIQAGYGAFHKHRSFLINRGIPMAHKRRLFNGCI
LPAVLYGCECWALTNAQMNRLSVAQRRMERWMVGCTVLDHVSNERLRDSTRIRDFVRDAQKRKWFWLHKIANDDNWKWSR
SVIEWFPTRKRRRGRPMTRWSDIFRKTVGPNFLNEARKASWNAMHIRALT
>RTEX-3_NV_gag#LINE/RTE-X 13-1767 [Nematostella vectensis]
MAEMEELENFLSTNKKNQLKWSGNSDKLKDFLVHLMEEGSNEKLVSVNQIGTTSVLKFESVTVNFYLSTNTLQVQGAGKD
VYISKLTTLATKSSSNAMNEIQTGAKVQPAAKSIEKENKKEEQVVHDARYEEIEAFMATQRVFNAKIEDKVTKNTIEIGE
QSIEIEDWKQKTKHGISDAKRECECKIEMLRSELSASINDVAKKISSLTSKVTSEFKLIKNKSTSAAETILKILGELGEI
KEQLVNTEQSLTSRITKSPCLNQTEGSTIEVTSPQDMNSHKDSQRISKDDSWGQITYTVDTKNRFETLQDEVQPGVPQSR
GKRASETWKRQHNGRPNIKPLEQTSPTRQTRMDANRTKPETSEAKGPILLIGDSILRGIQQRRFCPDRYVNKQYVAGGTK
ELLQYIQTMDDDRNDYEHIIVHSGTNDIEKLRVNEIAVNMENCVNALKGRWPSSRIAVSGILYAPKRDGTKIDDTNYCYE
DICKDNGAHFINNQRVTSDTFGNLDPEVFHDDVHLNNNIGTKKFVSNIKTRTGLRRDTERSERRARAPPYKQQKRTMWGS
YDQSFPPLQALNALADYFRRHRPS
>MGR583_pol#LINE/Tad1 1819-5706 gi|2454622|gb|AAB71689.1|   reverse transcriptase  [Magnaporthe grisea]
MTKYSLGNMQRECLDVVWANVGKRMGVHLSLLELCHQRKVDLVNVQEPWCGLNTTTQTHPGYDVFAPVDEWHANTYEAMT
GLRPRVLTYVKKGAALRAAQRRLPQGQNTRDILWLEINGILFVNVYRAPGTEAALEMVCNTVPNGPTVLGGDFNVAAAAY
QPGRANARGGDQLTAWAQAQGMSFTGNIGVPTHRDGGLLDMVFSNLPSTITVVDSSLYTGSDHESLYTTLRTRGAPRPEA
INVSVRDDRLPKFAELLAFGMQDMPDPGSAADAYALDAWVAEFTTLWEQVTWVVGTPAGKRDSSAPWWTENCQRVWSEFQ
RVKRSAVNRADASAEEKAYTKGVRAAKREYWRHRIDQLRDDKDLWNMVGWLGAGPRLRSPPLVINGEQVSEPLAKAEALQ
REVLGRFSAEDDLQGDPLEAWSPDEAKIPWDTQVSAEEAERSCIGVTSTSPGIDGITVRLLKAGWASLAEPVRRLYQRCL
ELGHFPAPWKKAEVAMLPKTGKKDRSSVRSWRPIALLSCIGKGLERLVARRIAWAIHDNGLLSCTHGGALPKRSATDLVC
ALAHDIEQALARGEEVTLVACDVQGAFDALLHGRLIRKMRSLGFSKMLLRFVINFLSGRQARVRLEGTTTGFRRLGCGTP
QGSPLSPILYMLYLAYLVKNGTKWRLAYADDVLTWKSSPSLEENVRWLEDKLRDMHEIAAEEKIHFAAEKTEVIHITKKR
HGRNPEIRINGRTVTPVQLPGGRRGQSASGAERYPGMRWLGFWFSRRLDGRRHVAERAAKAMAVAAHLKSFGAVRYGPPA
AALRKAAVACVGSSATYAAEAWYNPAHKQRGLLKALNKPLVLAARAILPAYKTTPSSTVLRDAGLPSARVALAYTRLKYG
ARLRLADKGHPLVSRLRETPRARNSGHSATTLQTAAQLLPRIRRLELRAPRNAPDSRTDPTGGVPKEEAARRFIEWLDMV
SPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAARAASITPESHVFDAEAIGALKGLQAAAKAQPGARIWICVDSTS
VIWGLRGDAPRSSQWAFLEFHNLVDLLRKQSTEVRVRWCPGHQGIPGNDRADELAKAGSAGPPDPDPRAQQTTYSGAGTV
LRAILSNIEKDWWRKELCERSPAYREWKFQYTPRKEPEELRLPRPLLGHYLAMRTGHGDFKAYHDRFNHQDANTSCAWCW
KRTSPEHPVHCRFSRAVWRNWPWPDNDRPVGPPDRAQRRKFFQTSLGQPKSFEAFSIATNYFSARPRAARQRPARHERTL
RLGTPIVNDSNSDEE
>I-6_AO_gag#LINE/Tad1 2-481 N terminus truncated   [Aspergillus oryzae]
PRFAVVAHRTPTEDFLAPEDEKDFISSIMEENKMELHGFRINRIAWLKSRDKPIGKHGSLAIWFDTREAAEWTMDNGLLV
RQTCVRVEPYKFKERRCHRCQGFGHLAWACRGKARCGHCAGAHELRHCPPGVRARCLDCTGEHPTNDRSCPNPAKHPYSQ
>Tad1-1_EP_pol#LINE/Tad1 1876-5943 [Erysiphe pisi]
MRLIQLNCQHNYAVCQATFQVGVEIEADFICLQEPYVGIRGMSHPAYDFVMGNAGETRQQRVAFGIKKDIRANVIVETRS
DLVDHPYIQIIDIWELDLCGNKSRKTRIINAYDNWVGDGYQWKGDKDEKRRAIEDISWDKVIEKRTLLVGDFNAHSPYWN
SLCRRRIRADQLESIIDRHKLLVNNEMTTPTRPKQTSGCSIIDLTMSTPDIGYLPAWTIDPEYATPSDHELITFDIENLN
NHAKQTQTYSEVTGWALKEITTEQEKEAKREWGIRTENRSIVDDNSSITDLDAEAQWITDTLTKIFDQHFKQLRVCARSK
RWWSNDISESRSEFKAARRRFQRGQTSLEEYKKLRNAYYRKIRKARDKCFEDWIQGGEEIYEPLPADSSPESSQTFRKRR
EEENERCWTALRYTKEWTTQLTPSLKSENGQVASTIEEKEKMILETLFPCPPDDYQEVLIDSAGNSHLGVTMEVVHRAIL
DQSVRKAPGPDRLNFRAIRLLWDWDSERITALIRQCIRQGHHPHVWRIAKGILLRKPNKADYSQVKSYRIISLLNCLGKV
AEKVAADIIATWCEKRDVLHQGQMGCRKQRSCIDAVARVVAGVEEAWNRGNIAALLLMDVKGAFDHVSCNSLLRRMHKMG
ADGQMIRWVESFLTDRRMQFVIDGKCRKEVQIRTGVPQGSPVSPILFTIYLCGVFDSVEQGVDGCTATSFADDCGFVVEA
ATVPDLIGKIQLAGEKASDWGSENFLQFDQSKTEAVAFTRRRKGKTELFNATIKVKNHSFKFNKEATRWLGIWLDTTLSF
QAHKNVYLQKARKAEGRLRSITFSKGLAPGLVRKIQIAVVQSVALYGAELWWRDQKTWEQEHQKLINRQARAITGVFKST
PIGITVKEAGLRPAISLLNNRQRRYTQRLLGLPISNDTRKILPETLRDGDAHAQPGEQDATGWDWLSDCKAKQLSHRLAN
SLVKGTDFDSTFGIECTEIINECQFPGKISVLARSEEALKMANEHQDSLGELSFWTDGSKLENQRVGSGVAWQSENGKWN
TRKIYLGTNKEVFDAELYGVDQALEIAQKAGRPLARTSSQSTIQSLSKLQTVFIWLDSQAAISRIRHVEPSPGQWLVRRI
HQRVRELREQGIGVQINWVPGHSGVEGNERADVAAKQAALRGRQCQERFASLSHITRLVTERKWKECQIWFQLKHRSRSQ
AVKDTYNMQIGKRGINKVASHSWKILAARYFQLKSGHAWTGSFLGRIKNRETNKCTECSEAPPQTVRHLMLDCRRWRRER
DEMWKQIEISGSQIRPRRTKIKTLFGDEQATAAILQFLKNTTVGKRNMNSTAEEWRETLGIEDLDADEELGESENE
>Tad1-3_BG_pol#LINE/Tad1 1060-4884 [Blumeria graminis]
MTKWKHNGQLKSHKASPKPLTVLSLNVGRGALSHEIALNEAFTILADIILIQEPYIFRDRARRITKYHPSYETFSPIDDW
STTRPRVISYMRKGVGLRADQIYNNLSGNILTLRLKSPSGKALQIINIYNAPPGSTGGSALXPLLTLSIPTNXSSIMIGD
LNLHHVRWQPSWPSSPSAGAETFLEWADKNNFVLLSPLDVATHNRGNVLDLAFGSGPLAQSAKSTVGTHLDTTSDHSPLX
TEIDWVGYVEPLERLRVDTLDPALFRRLLSISLGGLCTLPSPLTEKSLDSFAKDIVEAIRMAYASAARRSLGHGKGNPWW
NKSCKIARQIFKSAIKTPLTVEELKEARKTYRKXIKMAKNTFYIGKIEKACTGKDIFAISKWHKSTVRYRSTPLKDPRFP
QNPPVTTLAEKREVLIGNLLVNLAEAGDIPMDSPAVPTRAIEFPPLSMEEIQASILRCSNTAPGSDEITSEVLRHAWPLI
ADHVYTLFNSCLSLGYHPRCFRQAILVMIPKPNKSDFSSPRSYRPIALLSVLGKGLERLLAKRIAWISVRKKVLASQQFG
ALPGRSAVDLTTCLTHDVERALNEGRTATLLTLDVKGAFDAVLPGRLARRLREQGWPESLVKWVSSFATGRSVQIRLDGE
TGPLQQVNCGLPQGSPASPILFMLYISPIFKMGKISQRFGYADDIALIETRXSLQENCGRLTAALQEALAWGRGEGITFD
PGKTELQHFSRRRADKDPNSTPSINCEGFSISENASRPYTRWLGVYFDKNLTFKWHVRTLAGKALKVANALRNLGNTTRG
VTPRLLRRAVISCVLPIAYYGAETWWPGRTRTLASTRTISNRIEGHLSLLQKVISTSARAILPVYRTTPISALYREAGLL
PPEVELDSRSRMAALRTHRLDTRHPLNRRVSWVQTREIRISRFSGWVLNFPKTENIDPLVQPPWSANENWHASIRRVTNF
SHRLPAGIPFQDLVAYSDGGLRETDSGPRVGGGVVIYQAGRIVSRKCIPLSSSLTVFDAEVNAALQAVTTALQLSSARFA
NNLWVLLDNLDAARQLGTVPACSSQEAFIKFANTASEWPRRPRLPHTTPGKVQVHWIPGHRNITGNSHADEAAKEAMTTL
PPPLPSHLTLSAAKKWVKYSKTEAYKKYWEISAPRSYKDLNIGVSDRCPGELSLPRHLVAHIYAARSGHGDFASYHLRLS
HTNANMHCSCGEPKSTKHFLECSLPTXRTPKAPITDPNITKFLLGTHKGAIKLVNWLEETKFFRLFAPDSPLRTQ
>Tad1-2_BG_pol#LINE/Tad1 1770-5435  [Blumeria graminis]
MRDRNRNRRKQKTPGLCFFQINVGRRASAHDAALELASKCGANVVLIQEPWVSTDLSRRLTKTHPRFQCFSPLSNWNIRP
RVMTYVCKEQGLSPFQPALHSRDLLQVVIPRRNKRALACWNVYNAPIGATDSGEGLKYLINSTGSPDILAGDFNIHHSSW
DPKSRTDSVDGDSLLSWTASKGLTLLNHQGVPTHDAGAALDLCFVRNNVSASCEIRQDLEVGSDHRTILCQVFDWEAETP
VPGKLQFAACNWEMFQDFVTNRLATPPSHIIEEEAATIVDIIAGALLAACPRERKQATKAGWWGKECTQAHLNFCRARRA
GLSATSERRAFGKVVRKSKREFWHNKVEQVSNLKEAYQVTRWHKREAQYHTPPLEGPSGPIFHPAEKAQLFKEALLSRHL
NQADLDDAIPTVAKRSIAWPPLTDVEIYNSCCTVPTSAPGPDNITATVLRRAWPIIGPRIISLFRQCDEWGIHPSAFKKA
NVVIIPKSGNRNRALPTSYRPIALLSCLGKGLERLVARRLSFLALRYQILSRDQCSAVPRRSATDLTTALSCDIQDAWAK
KHVAGMVTVDVKGAFDGIQKGRLCHCLRSQGWPFNVVQWVSSFMSEREASITLDGTISPVFKIHCGLPQGSPASPILFLL
AIEGMLHLSPKRFGYADDVAFIASAPTLARCGELLQTQLDMTLAWGLENGIALEVSKTELQYFHRKHGSPLEPSVYADGV
EITPNTHTRWLGVIFDRSLGFREHVRQACGRSLAITSHIKSLSRVTRGMSPLLLRQALQGAAFATLLYGAETWYSKGTPK
GLVRRIQQRMNDAARAALPVYRTTPVAVLLRETGWGPAKAWLERIHDRLALRTAAADPRHPLRRRWNSSRMCGVRQRISP
ELSEDNIPPPWEAGRDECLEKIGAVGRTAGVDSFTQWYARQPMMDLFVFSDGALIENQAGAGYSIRRGTNHEIARGNIPL
GTSAEVYDAEITGATEGLAAALLNPMAFYATNLTICLDNQEAALRLLLLTPTATSSRRIAKFRQLAASWTKRKRASCTKA
GSVNVRWCPGHSGIPGNEAADALAKSACLMSAPSLPPSIARAKREISLLYNASTTTYWAQEGSIRYKELGIGPSLGISPE
LKGLSRRALGALIAARSGHGDFAQYHRRFTHEDALMTCSCGEEKSPDHFFHCSIGRSWARLSGGPRHPSPGIKWVLGTPK
GALAFGKWVELTKLYDKIQQVN
>CgT1_gag#LINE/Tad1 150-1739 (1 stopcodon) [Glomerella cingulata]
MASQPAAGPSQGPIGLLSSMHNLPKTPPPPTSLPPRPRGLTPPPIQLLGRGRRSATAALQQAREGRALRDEALDLLAKGL
DTLIGTAPARLKATAQDLIDSFTRFATAEISGPTPTPSPGKTYAQAVGGSTIGGPLSGPGPGPRPSRTTGWQATNYANKP
KRAQDLRLLVRLPAEHIPTSRSLAPHSVKMVVTKELNLQPDLVEVRHTATGFSLKPQNKEIQALLLQRAPEIKNCLTAEK
VEVPTKWYQYNIPFCPLYFTSLDGSRVSIESEIEEEVLLRTKQRLLSWRPTRGSLNLATATQSLIIALPQEVKEGFRLFG
QSGPARLLPPRKRTPKRHSPGCQGFHSNRFCTRQALCENCSKPLDTHEAGLCLARSKCANCYGPFPSSHTDCPARPLIVN
GSLTIPTRKELRGIRKAGEETTKNLSASQTCPLGSTQQANATQGQQPASKRPRPLTPTQDSIVVADTTSVAGSSSSMDED
ETEDSEALPLTNRPIRPLPSSSRSQRVAQKPDYNVINAYTHLDLNSEP
>RTEX-10_BF_pol#LINE/RTE-X 2990-6565  [Branchiostoma floridae]
MCIPHKSKQTKECRRNDFPSSSRNFGISFGFWNIHGLGSKLDDRDFISQIEGFDFFSLSETWHTGELSFPNFLYFSSHRT
KSKKAKRNSGGLIFMYKKQYRYLVTRLNSKSEDILWVKIDRQLFNHDKDIYLASVYISPKGSTIHSNRTYDIFDILEEEI
AYFSDLGDILVGGDFNARVGTLPDYIVNDAPLDMQILPTNYDFDHPLPRNNMDEGQPTVFGKNLIDLCITSKIRILNGRT
PGDLLGKPTCFQPKGCSVVDYILASESIVLRKSPFFHVHSLSPLSDHCKLSLIIEGNPLAYQKKKTKLRTSPYRKFVWST
DSKEKFMETLNSTAFSSSMSSFIRKSYEPTPESLELALHDFVTPMQEAGQKSLSIRCTIAKRQRCPKQLNKKKWFNQTCA
SAKIKLQNICKLLSKNPRDPHIRGSYFIQKKQYIRLIRRTKKEYKNNILNQLNSFSGPGANPSAFWSLLKEYKSKDQTHS
HEIISDESLHSHFSSLYGEDSTTNLPKLPNAFEIQIQRELLNLEDMLQNTHCNSLNEPINKDEIKQAISNLKNGKASGGD
LIRNEMLKCSSHILLEPLSKLFNLFLSSGYFPQDWCTSHIVAIHKGGAKDDPGNYRGISVTSCLAKLFTSILNTRLTTFL
DENNLISPNQAGFRKEFGTNDNLFVLDSLLSKHLSENKRIYSCFIDFKKAFDSVWREGLRFKLLNSGIGGNFYKLIKCMY
TKPQTCVKTESGLTPPFVTKKGVRQGCNLSPTLFNLFINDLVHVLDNAECEPPSLHNLFVSCLLYADDVVILSESDKGLQ
CALNRLSAFCKKWKLQVNLKKTKVMIFNKSGRSFRNQTFVFDQDTLDIVPSYCYLGLTITSSGSFSLTKKQLSLKARKAM
YSLKSLIRSSVSPKCLLKIFDSCIKPILLYGCEIWGTESINDNSPIEISHHRFCKNILGVSRNCSNLASRAELGRFPLDL
DISVRVIRYWLRLLQMDPHRHLLQADALLYQHKSISNSRRRTLLQRVKEILDGSGHSYLFYSCNSLSDIRSICTMIRSRI
SDMFIQTSRHNLSIDTGKLRFYKTCKTAHTMEKYLELDNFDLRSAISKIRISAHPLEIERGRYKRLSVCERTCKQCTSNV
VEDETHFMSNCSLYNQERKELFEEAIKFHPNFLTFTDKKKTVLLLTSQNPHIIEKVGSFVFHCLRKRSRTQ
>RTEX-5_VC_pol#LINE/RTE-X 1313-5188  [Volvox carteri]
DSTSRGPRGLRVLLWNVHGLLEAGVFKLDRAGIKSFVTSHDLIIVTEAHLTDAVPDSDVSLEGFRLMRVQRSGDAVRADY
GGVALYVRDTASHGVTIVRKNNSLAGCEVLWIRVNLLSGNSLLVGACYLAPETSRVYPAGGATNAQRAAAAEAAFARVQQ
DISELRQPGEDVMLAGDLNARISSAQHTKHRSSPADLPGYVSDVPDLDQLTALQEFMGLPGDTDPQGYTDVPGRRSEDLV
CNFAGHQLGALCRSQGLLVLNGRVSGDLEGRLTFPKGEAGGSMIDLFVGSAGVLRHAYWMRVGELLAPDGWFPTDHRPVT
LVLGLAVGGTGTSAKGCCQKKRAVFEISRYRDYAALFTDGSQVMHALNGVITDLSNGACNSTESVERISTLLRKVLIRVF
AGRRPEGMQAGGGALWWNEECQSVRQHMLACRVRLGPGRVENKSGPLWEAFCKARNAMNRAKRRARAAYDAERMREFVVR
CRHDQRALWRALGGQLKERCAIDDLHVFRDHFATLLNAGVGETGVEGAHRLLNYISFFGAPLGEGAWQACRTVMDRRARA
ASILDEPFTLEEVARAVGRLPNGKAHGLEAIPSECYRYARLPRVDEQGRQGTEVNCIVPVLHVLLEHIRATGDFPQQFTK
TVVSPILKKGDPLVAGNYRGIAVGGALAKCYASVILNRLVRAGEILDLRHPCQAGFRRGFGTAHHLFVKQHLVRRHRIAG
QPPLIIVQIDFEKAFDRVPREHMWLRLQERGISGPMLGALRKAYEKVSMVMKVNEKVGGEFESKQGVKQGCPLSTELFGL
FIETLADLIDTHDLVEAGARKCDAPLVDSKRVSILLYADDVSLLATSVERMSELLHLVDLFCEAFGMRPNVSKCERLVFA
CDGTQQSELSGRCQQLRLSGQVVPAKDSARYLGLVYGPERPFSACRQQLCDTGRSAMFSLSAKLDKMKLFAPDVRMRCFA
TQVRAILLYGCQAWGPFALAEVVDRAGRRRDKANLAEGMFEACLKDSAVQLQILFMRQVVGTARPSHRLLYAELAELPLQ
YYMVKQILRFWNRLQKQVGSIAHAVLRQEITDALTNPEWEGWGISMLRLFSFLECNIWSGIPQEVVGVKERVDWLLSRPL
PEGAIITALRERLMSGWDHTRLTVLPEEYPSDGKQPGVQMAKYKHWMGLPFSGAAAVMWPTHAKVFIPRLAHRKLMQFRL
CCWALEANRARRGKYHVPRGQRFCHCCGPNSRIEDEKHVLLECPAYNDIRAEEGFDHQQSMLEAMQWEPARLARMLERMW
AHRNSITPFGR
>RTEX-11_BF_orf1#LINE/RTE-X 119-2443  [Branchiostoma floridae]
MCGVKLRSNNLENWLQHHKDGFDRDFESNKGTSVTWKSTQGATSLTVSTNTRKTGKGLLSVHFYQRKKGLMVQGQCTKWW
IDNFYAEIVRLPLPDKRTRATSKVQDGVQLRVRHALDSFPIPDLETTPTPASRHNVDETPTLPKRTNPRSLEGLKTPDGS
DSGEQMRLESKNDAKCKDATIKDGAQTDGQIKDNLPTNNETIMSPLSSAQKSGPSPKHEVAPKAVDKRDLERLASNIEKS
LTISDTAFDDLQKQFVDLTDRQNSLRDDWITKEREREEVHLKSLKELSAQVEATQKSLEDHIKKVISKLQNDLLLAQKDL
VSQKEAMVKERQETMNEMMVERNLWRERYHGLSTKVDALVASNTDLQQIIETQNAEIQALVERSKELEQMFNSCKCKSES
IKSTMPPGMTKADRTHDNDVPLKNPEDNEMHALSDNEAIVKQQSVVNSVKTPAANNHTRGTTDSTEIRIFADSIFRDVDA
DRAFNGRSAKIHRCSTVQAAMNTMKTTQDSTTKTVIIHLGSNDLDNTKQHSDSVSETLNNTHNLLAATKTSFPNADISVS
QVLQRGSNPSSSLNQNIKSYNQEMLKSSKKGTFTYIKHKKLTQDRSLYLGDQIHLNHRSGTKLLVADLKHSLKISPGQNV
ERSQPNLTHQPVHLTHHQWNHQPAWRGPLNPPPSPYVRGRQPAWRNPANPAQGPSAGGNQSAPGSFQNARPQHNQRGTLK
GQHQQRDAHTVAVTSGSKQIVKADPARVGHRKYPGLELKHFGKSLRKALNFLLS
>88179640_Cgl_pol#LINE/Tad1 gi|88179640|gb|EAQ87108.1| hypothetical protein CHGG_03727  AA 309-1339 extended with gi|88182979|gb|EAQ90447.1| [Chaetomium globosum CBS 148.51]
MNRTFQVIQLNVRKQGEVHDSLMNDVAIQDAAVIAIQEPQARRIQGRLLTTPMEHHKWTKMIPCTLKEGRWAIRSMLWVN
KIVEAEQVAVDSPDITAAVIRLPERVVLVASVYVPCGDGEALKDTCENLRRVVAKAKRGVGTTVDIVVAGDFNCHDQMWG
GDDVSSVRQGEADPIIDLMNELTLSTLLPRGTITWQAGGYGSTIDLVLASEELAEAVIRCGVHRTEHGSDHRAIETVFDI
EVPVPTHHDRLLLKNAPWKDIRAKIANTLGDTPAEGTVQQRTDRLMSTVSGAVHSLTPKARPSPYAKRWWTTDLTQLRHI
YTHWRNRARSERRAGWTTAEIEELAKGAAKQYHDAIRQQKKKHWAEFLADNDNIWKAAKYLKSGDDTTFGRIPQLVRADG
TSTADHREQAEELLTRFFPALPDTIDDEGPRPQRAPIMTPILTMEEVERQLFATKSWKAPGEDGLPAVVWKEVWQVVKHH
VLALFRASLEDGALPSQWRHANIIPLKKPGKKDYTIAKAWRPISLLATLGKVLESVIAERLSHAVETYGLLPTNHFGARK
QRSAEQALVFLQEQIYTAWRGRKIVSLISFDVKGAYNGVCKERLVQRMRARGIPEELCRWTEAFCSDRTASIQVNGHAAE
RRDLPQAGLPQGSPLSPILFLFFNADLVQRKIDSNGGAIAFVDDFTAWVTGPTAQSTRKGIEAIIDQALDWEKRSGATFE
ADKTAVIHFTRKAYKANSEPFTIKGQDVQPKDHVKILGVVMDAKLRYKEHIARAASKGLSAAMELKRLSGLSPATARQLF
TAMVAPVVDYASSVWMHQCNWKTAPAIHRVQRVAARGIIGTFSTVATRVAEAEAHTPMAQDRFWKRAIKMWTDIHTLPET
NPLRNATSRMRKFRGSYRSPFFQVADLLKDVPLDSLETIAPVVLAPWERRVRTTVDGAGIQQKETEWAVRIAVSSSARNN
MVGIGGVVRLPLPMREGSRNEAFSVTLGSRSEQNPFSGELAAIGYALRWIRNIRYRKIILATSNKAAVMALERPHQQSGQ
QYLCQAYDAISALRKAGNTISVVWIQAGTKNELLNTAKAKAKEATRQDATPQTQDPAMRSTALRIAWAKRAPPTSLPDKV
GRHSKRVDIALPGKHTQLLYDHLSRSEAGVLAQLRTGMAKLNTYLHRIKAAPSDQWGTSPSTWEESRPRMTRTGPPTCGR
CGRRYVLPLPQVV
>RTEX-14_BF_pol#LINE/RTE-X 2618-5762 via tfasty with RTEX-4_NV_pol, 1 frameshift. [Branchiostoma floridae]
MPKTSALVFSSWNIQGSCCKKFKDDEFLSYVENSDIICVQETWLDSYVDLDIPGYSFFTSSRIRSKGAKRNSGGVAVIFK
SLYRRGISKLVSSTVDTVWCKFDKQFFGLENDLYLCNAYIPPESSSKSSNESPFEILSNDICKYSNLGDIVVLGDLNART
GQLIENHFDTFTFDNPITDGLCFTKNRQNRDIKVNNYGKTLIDLCSAADLTILNGRFAGDLKGDFTCYHYNGSSVVDYCI
VRNSLLSDVQYVNVSPISEFSDHCHVSFSLSTXXXXXXXXXXXXXXXXXKTVTEYLNQLDDHTPNPLDFPFTPVEVLNGL
KLLKTGKASGIDSISNEMLKYGAKHLCQPLVSLFNTILDKGTFPSNWNTSILTPIHKSGDKSNADNYRGIAISSCLSKLF
TLILNNRLQNFAERNKLLDDTQFGFRKRCRTSDNVFILKSLIDKYTKKKGGKLFVCFVDMRKAFDSVWRDGLFYKLHKCG
IGGNFFNIIKSMYNDVNYAVRLDNGLSNSFPSVCGVRQGCNLSPLLFDLFINDISECFDPTKCDPAVLTSKSLNCLSWAD
DLALISSSKQGLQHCIDCLENYCKKWKLYVNVSKTKVVVFGKGSSKNNKDQFHIYGKNIEITDSYTYLGIPFTFSGKFKT
ARKYLKTKAMRALFKLKALLLSNKDISINLGKNLFDKFVKPIFMYCSEITCFDRFSKSIRIIVSHTNNICEPSSKVFSTL
LKKLNIQDNFPATIRKTTSSALNTTYVVCLERNTDKEILLRHANSHILRDNGFQIINLDSNQQIPEFDIIDMRFQKFLLG
IHAKASNDGVRGELGTFPARIDAEMQLVKYWHRLVNLPEDALLREAYNTVSFGEHDWIVHVKNILNYQGFGHIWLNPRSY
HIDTITTQLRQRLQDIYVQNWHSSIRNNSKLSSLSTLNKHYKQENYISTIKSLDVRRAITQLRIGCHKLNIETGRFQKIP
IDQRVCPFCPELIEDEYHFMVVCPKYSDIRNSLYRRLSFCTQGFIQMDLKCKFRYIMTCDNPCMADIGKYIKEGFDIRNS
PNDCKSLQ
>L1-4_NV_pol#LINE/L1 1-3741 via tfasty with L1SU_SP_pol, 2 stopcodons. [Nematostella vectensis]
VSFLQEIHSSPDLKENWKRQFRGEIFMSHGSTESKGGAILFGKNLQYKILETIVDSGGRFLVSHCEIQDQEFILINFYAP
NEEKDQVEAIKNLYEKIQTINASVNAPVIWGEDFNVVMNLTLETFGGNPVLKTHTIKTLETILVELDLCDIWRLRNPTKK
RYTWRGCGQGKASRPGQYIHRRLDYFFISDGMQTSVELYDIIPAPSADHSAITLKFKSSKENARGPSFWKFNNSLTENQE
YIDMLTTKINEIKSSLTIEGIDNPQLRSELIKYEIRKFTIGYSKVLARQRRCEYKDLEEKIKSIEQIEDWESDKSLYSEY
NKLKLDLENYSNHVTQGIIIRSKSQWYEFGEKSNAYFLSLEKRNKNKTHIKKLLIDNEEITDLKSILAKIKHHFSSLFQS
KSSKTEECLEFLSNLSTPRITEEEKTKCEGKLTLNECFQSVNSMGNSKTPGMDGLTKEFHLAFWGDIGQDLVKCLNDSYD
KGRLTITQRKVLITLLEKPKKDKRIIDAWRPISLINVDAKICSKALCSRMKKCLPRIIHSDQAAFVEERTIEDSVRMVAD
TMEYINKSNKSLILFAADFEKAFDSIEHNFIFAVLKHYGFGSSFVNWIRVILNENMSAVVNNGHCTDFFPLGRSTKQGDP
ISPYLFILVLEVMATMIRECKEIKGLQIGNQEKKLALYADDTTFFFFLGDTASLKNTLIILKQFSxFTSLKINLSKSEVG
WLGEEPLQxQVLGNLGLKWVDFYKEGVMVLGVFFSYNETLSNQKNFIRVLDNFKTVLSIWRTRDLTLFGRIQVVRSLALS
KLLYICSKLCLPSGYIREVESAVKDFIWRGRKPKIKYDTLIGPYEKGGLKLPDFASIVKASRIKLISQLLNIEERSWKII
PSCILNEIGGIPILGRENFDTESLPNSLPNIYKNALKEWADVFCHSKVDTLSTRSVLEQSLWCNKFISVDNKLIHLNDFI
SKDVLCICDLCNDKGELDWQIAKEKGIGEHRFLEWLRLIKAIPAIWREKLMDQPETANMASISSVIREKYVNLKDSCIKA
DSIKTNDMIYDYLIERILKPPTAQKNLEKRINSSSEIKWETVYTRIYSSTIDSYIRHFQYKILNNVLFLNKQLHKFGIIP
DSRCSFCLSFPETIDHFFVECIESKNLYFEARQWLEQYNISLPESNLENILLGIKDEGPENFIIFLYKLCLFKHKNDFKI
PSLMVFQNFLKQYEKIEFLVAKRKRKMSAHYQKWENVIEALKKSSC
>Harbinger2_DR_tp#DNA/PIF-Harbinger 2140-3243 [Danio]
MAALQRVFQLRVRQRERQRQRQRRPRSTLCTINAFIRQHQNPLDMLDDMAVIHRYRLPRGEIVQLLNVIGPQLMRATRRN
FALSPDVQLLAAVRYYATGSFLQVLGDGLGLSKPSVSRAVQAVTYALLPLAAEHIKFPASRQAMSDIQEYFLTHYHIPQV
IGVIDGTLIPISTPSVDGHTYICRKGYPAINCQVICDHNCLITDIVARWPGSTHDSYIFTNSSVGQEAQNSNGHWRLLGD
SGYPLRPYLFTPVANPVSNSEAHFNEAHRVARSTVERTLGRWKLRFRAIHKSSGGLLFVPQKCCAVITVTAMLHNIAVRA
RVPLDIREEDEEVEEENEVEMRIHDDQPRHVQYMAGFGARQQVIDTFF
>Harbinger1_TP_p2#DNA/PIF-Harbinger 3466-1991  [Thalassiosira]
MSSSTAAAATDPTDDSGPPAIVDTAINTMAQSQSTLEDDGSTMTYSSVRHITSAHDGQPLSTETLLEGDGSSGQVQLYVE
NDVDTPPDNRIKFIIFLAKTIGIDVESDLKDIADRRGKKKLVQFTKTVLYREIMRRDPNAKVNKNNTSLDAMWNLLPALT
DERDVVYIRSQYSSIRQRLVEDVEEREETIARRQDTDVWRFFLLIPKFEDLRRAYAYSQTPSHREMLDGRETYKSRFLKL
MVQYFNDSNISVSTPSQPSLHSCFSEPILCDKGDFELTEEKAKKILADSRRHLTTMINDWERSGNGSNQQRLEEDFFDEL
GDFDTWGRFDPGTCDGDDRSNFLRHLPVYWLMVWHLCDEGDLLRFTCAQLREEHSASSEITPGGVSRGSGTSSASKTGQK
TAQQTYELQKELVSTVKDIGKAVAKFSDDTTYERASKIRRLDMLKDTRYEVYKDSKSKRNTAEERAVAAEYVKDLDERIA
TMEMELAVERGA
>Harbinger-1_ADi_tp#DNA/PIF-Harbinger 206-1282  [Acropora digitifera]
MPNLRETRNCIAYAYRKGFINDREFVLLYDANRSKNPDFPYWNYERFELDELTNAECNAEFRFYKHDIYKLADALQLPDE
FVTYNGLIVESIPALCIYLKRFSYPCRYSDMVFRFARPVPEICIITNHMIDWIYNRWHHLLTTYNHNLLSPANLMLYADA
VHQSGAALDNCWGFIDGTVRPVCRPGVNQRVIYNGHKRVHSIKFQSVALPNGLVGHLYGPVEGRRHDSSMLASSGLLQEL
QRFSNSPITGTPMCLYGDPAYPLRAHLQGPFRGAALTQDKKNYNTAMNGARTAVEWVFGDIINYFKFLDFKKNLKIGLSA
VGKMYIDCALIQNAHTILYQSISSEYFGINPPPLDGYFI
>Harbinger-3_AMi_p2#DNA/PIF-Harbinger 3706-4572 R [Crocodylidae]
MAPPRPPMPVPATRGPNWSKEETGDLVALWGEAEVQRQFERGGRSNAHVYEGLSGRMRERGHDRSARQCRIKVKALRAQW
VAITDHNRRSGSARKSMPFMRQLTDILAPRDPGRSRAVYSSTGGLPEPPPRPGTRGDASPGEGPSGVQQPVPPSSPAAAS
TSSSGSPGQRLPRQLRSPSPSHEARPAMXPPAASSASSSLGEGGPPAGRPHAAPRRPRTPPGAARRRRQPGPSGAAGHAS
PGHVVSPALGGGPSLPLPLPPRPARPHSPGPGFPPPTARREAGDSAKLY
>Harbinger-2_PTrit_p2#DNA/PIF-Harbinger 2039-2857 R [Puccinia triticina]
KYSLTLSLDQIKNQKNALRTLYLDYKFLRDQSGFGWDKARGTVTADKTVWEELITAHPRRNFGKLKDKPFLVYDLANSVF
SGKAATGEIATSELFPTTTEAVKLTEAAKLTSAKRKIVTLSDDDSGSDVDIEVKSSXKTAGSNMTKRVRESKNALIKSEM
ESISGAINTVSENSKSLVGEFSKIASALTNQRPSNPSTSAITPSEXTVLDVALQECADRYLGQVLNETYVEFASVLENES
KARTFLSLCRTSNDEVCQLWLEKKVEEAKKSKM
>Harbinger1_DR_p2#DNA/PIF-Harbinger 3249-3998_R [Danio]
MPSVPCPGPFPGSFEKCECAESGPSTVHLAGPGPVGRGVPERGSLGLWRGTLVVRVQACQSPKLKTLRHLLRHFKTGKNH
VTSLSATLLTPKSNRKRTSDAFSATIPKTTVAWKGSLWSTDEVQCLLDVWADESIQEQLDKTHKNSEIFRKIKDHLLGRG
YQRTTEQCRDKMKKLRAQYLKVRDALRRSGSKPEEKDKFKWYDAVDNIIGSKPSSQPNVLESHSQSMGDSTPSTPSETED
TGSERSQRGE
>HARB-2_STu_tp#DNA/PIF-Harbinger 1029-2344  via genewise with MtPH-A5-Ia_tp, 1 intron & 1 frameshift. [Solanum tuberosum]
MAIYSMLLRKQSRNRRVIRYCMSARIPKILSHLNVLIRDNDIVCIDKLRMDRNAFHILASLAKNIGGLTDSKNMSSTEKL
AMFLNILAHHEKNRSVKVDYIRSGWSVSRAFNECLRAILKLTPVLLVKPNPVLEDDTDDRWKWFKGCLGALDGTYISIRV
EAIYKPRYRTRKGDIATNVLGVCDRNLNFIYVLPGWEGSAADGRVLRDAVVRRNGLKVPQGMLNNRQTLVXFLLHQNRII
FKVIILLFTFLGNYYLCDGGYTNGNGFLSPYRGYRYWLKDWQGDNPSPRCREELFNMKHARARNVIERAFGLLKGRWGIL
RSPSWYSVKVHNRIISACCLIHNFIRREMEVDPLDVEMEFHMENQHEHDNINTIEASDEWTTWRDELAQSMWNERLGNQS
L
>HARB-1_OS_tp#DNA/PIF-Harbinger 2914-4404 via tfasty with ATIS112A_tp, 1 stopcodon [Oryza sativa]
MLHxAVSFTCSGRLFMQSLAISLLLSETHSLFSHTKTSSLLSLLFLSSSKMSEQNTDGSQVPVNLLDEFLAEDEIIDDLL
TEATVVVQSTIEGLQNEASDHRHHPRKHIKRPREEAHQQLVNDYFSENPLYPSKIFRRRFRMSRPLFLRIVEALGQWSVY
FTQRVDAVNRKGLSPLQKCTAAIRQLATGSGADELDEYLKIGETTAMEAMKNFVKGLQDVFGERYLRRPTMEDTERLLQL
GEKRGFPGMFGSIDCMHWHWERCPVAWKGQFTRGDQKVPTLILEAVASHDLWIWHAFFGAAGSNNDINVLNQSTVFIKEL
KGQAPRVQYMVNGNQYNTGYFLADGIYPEWAVFVKSIRLPNTEKEKLYADMQEGARKDIERAFGVLQRRFCILKRPARLY
DRGVLRDVVLACIILHNMIVEDEKETRIIEEDLDLNVPPSSSTVQEPEFSPEQNTPFDRVLEKDISIRDRAAHNRLKKDL
VEHIWNKFGGAAHRTGN
>HARB-8_SBi_p2#DNA/PIF-Harbinger 2796-3350 [Sorghum bicolor]
MFGRGSPRLNLFQVAAAQRXPSPKTSRVQKKKPSPKGMGFFSSLEGWYIKNMLLFVAYLCFSIPAVPDRPRAHWNAGLEK
GLVELLHDHNNDHYRGQNGWSPDAWNRIVKLFYEKFPYVNFTKTQIQDKERELKREYRLLKEARKQSGASWDDKLCMIVA
DQAVWNNIITVRFLSCLFLLFILVK
>Harbinger1_AG_p2#DNA/PIF-Harbinger unchecked [Anopheles genus]
MEQAGSSRRNEKIDHEKSLRFIAEVQKHRVLWEKKNKNYKNVVLKGDAWAAIAAKEEVSPQDAKHLWSRLLGIYRTNKAK
VKKTTQTGAGNDDVFRPRWFAYQAMSFVDEATQDAVHVDTLGYDDEGLTPRSLVEAAYAVPQSLDDIDWDAAVAFDPEPF
SPTPSSYPSALSVTPGTIREGNGVSGALNNRLQQPVSGATGAPETADPDDFGRYVADELRLIPSPKRRRIMSIQRELLET
LKKNL
>HARB-13_SBi_p2#DNA/PIF-Harbinger 898-1332  [Sorghum bicolor]
GDHIDWNDQYTTVVCSLFAEQVRKGNRPNTHLNNVGYTEVNDRFFQCTGIMLKKSQLKNKWDKLKGDYGAWRKLMRKQTG
TGWNWDKGTINMDAEWWKKIKQVSVLYFILFLIFYVIQFLTLVYIFRRYLVSGNLRIDLSKMKMI
>Harbinger-3_PGr_p2#DNA/PIF-Harbinger 2524-3282_R [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MASSPKKKRGRKAQKDSMATPKTAKTSTAKTPTAPKPIESLTTPKPAESSNINNDSTPKAPESAPKKGFPRWSVEEDKKL
CIAWLNTSRDPIVGNGQKASTFWERIHNTLSELITEYNEEKKNSKGFKELPLRPVGAVECRWALIMKLVNKFSGCYANVE
RRMKSGKTREDMVRFFLSYLLLYILYIYIYTNTQENRKAYRGQRIIQGNLRIVIQSRPLLGNLEGHPEMAGDSARKRSSK
QKRQAIWGSPPFF
>ISL2EU-1_HM_ex#DNA/PIF-ISL2EU 3794-1913 #reverseORF Via genewise with ISL2EU-4_HM_ex (1 intron)  [Hydra magnipapillata]
MSEYFKSLKLEEAIDYTKKLTLKNGEVLPDPFIIEPKEWSNDLNHLPNITWQDVTQYLIDTPSIYTKESIRAYKSLEAYD
YFTCGHVQECFYNKISNRSKFCFIKSKVLPSQRQNNKNMYDVWTCLEKELGWVLTANCSCMAGLGSACSHVAALLFKLEA
ASRLKLHETPPTSILCTWKKCKKSVQPAPLQLINFQRPQKNLLQKDLVAKLPLKKYFSNNNPMDGEHRLTAQEMEKLFKI
NPKSAIFTSINLTEFMSVEYDSSATETSSETEETTLPETLTSIYDPTSINLSEDKLIIFCESIYNDYKNDNNQRQYNNLC
NQTKTQSLNPVWMMHRAGRITASNAKEVYNSNTNYMSSESLVKKIMHYAKNSVNKYTQYGTETEHVARKYYIEKVKYSHI
NFQFLDTGFHVREQYPFIGASPDALIRCSCHQTKILEIKCPYKYQNGFEGWEEDKDFPINKDLIIKKDHKYYYQIQLQLH
VCLCSEADFLVFSPAVKGEQSFILTIEKDTDLILKMIDKFFMYFKNILLPELVTRRNDKSTINSRKVYCICQRPSFGKMI
PCNFTNCKYEWFHYACVGLKRAPKTTNWLCKECKTKQ
>IS4EU-1_DR_ex#DNA/PIF-ISL2EU 4892-4449, 3780-2710 [Danio rerio]
MAFNVSSGNVLSWEYGETSLQRSDGLILPHPSSPLMWVDDMKKWPEVTYGDIFNYFVLSQGVDGASMKNYKSTEAYQYLH
SGKVGRVLLHSEGDFVFLKANVHPSQSSSPCHSAWVLLSKQGSVETTGCSCIAGLGRSCSHAASILWKVENAVSSGLTGI
ACTDEQRLWNMGTQRNLCLKRLMDIKFSHHQATDVLRMPEGMPKNAPLPPTPLFSTQKDLREGLKHLRLPASSLLHKCVS
AVQGEESEQPASSPHANHDGTKNCQRCMLFYDSLVAIDPSKCAALERVTLEQSSSHLWHDSRKLRITASTAKKVPIRGNP
QTFIREHLYPRFHGNAATNHGLESEASAIQWLESSGFTVSHRGTVVCGSEPWLSASPDGVLNLHELLEIKSPLLKCDESL
EDLFRSQRYDVRMVDGIPQLQPNGPRGFYLQVQLGMFCTGLRSCKLLVWVPSQQVLLQVPYNEQFCSKTVARLKTFYFKY
MLPQVTDEFQAGRLLLSTRYLQLCK
>ISL2EU-1_HM_tp#DNA/PIF-ISL2EU 177-1819 Via genewise with IS4EU-1_BF_tp (1 intron)  [Hydra magnipapillata]
MPTSCCAVGCSNKFKKECGLKFYKFPSGKTPFEKRRRIDWIKAINRKDWDSWESExISKERVCSAHFVSDNINNDINPPN
DKSAISKFCQHDTYKVEVETLNFQLMQYRNELIEKSNEIIELKKKNARLDHNKYISYQNLTDEQMNFFSGLSRTTFMWLF
ERVKNYIKKVHSRLLLEDHLLIVLIKLKLGLLNKDIAFRFRLSPAVVSKIFRTIIPIFSARVVNLIVWPDRGIIRSNLPI
CFKKKFKDCVCIIDCTEIFIERPKNLTSRSQTWSNYKHNNTIKYLIGITPAGAVSFLSPGWGGRVSDKQITFESNFCQKL
YPGDCVLADRGFNIKDELNAVGATLKVPAFTKGRQQLSGWEVDTSRQISNVRIHVERVIGQIKKFRIIHMTVPIxQVDLL
DDIMIIICALVNLNMSVVT
>13324604_NH#DNA/PiggyBac gi|13324604|gb|AAK18805.1| PEP1-1 [Nectria haematococca]
MRGTKSLIPEGIPANSPPKHHQFILIPSMTSPPILEEIQVINPYDDNSFIKEEHSHCLWQDDPTQAVNLPAENDRGTNFK
PFHVEIRKFRISPLPPTPLQLFQLFLPISLVEKWVSYTNSWITCLKENGVVDSWNNPMGKTSYLHKWEGTTVSEVLTMIG
VLIYMDVHKEKTIRSYWNPPKPGVQRPAHSFIKFISYNKFQLIHRRLRPFDHTKYDETAPIPKVFQCVEEWSDHIQAVSM
QIFLPGSHLAVDECMIRYTDRSDDITVIKSKPDPVGFKIWVIAQYGFFIRWIWHVKEKPHGAVGVEFQLRSHHHKVGQAS
EEKSQSKPL
>Kolobok1-1_TCa_ex#DNA/PIF-ISL2EU 1758-2699 (fragment) Element has fragments of a Kolobok-like transposase and a ISL2EU-like exonuclease. [Tribolium castaneum]
FVFKIMEKISGNSGIYTTKFSNRLLKTKELQATKLNKRKIRIQSADSDYGATNDIXDMPTETYDKIKNEFLNDLAACDIL
KIPLLTIGQRNNEQWDKERNNRLTASNFGRIINMKCTTNTANAVKDILYRVGLSKFKKLPEPLQWGIDNEEKAKEKFEQI
TGIKVDSCGFFVDKEKKFLGATPDGLVGSNAIVEIKCPFSARNTNIKTAIEQKLIKYLEIDSQDDSKIVLKEKDNYMYQV
QGQLHITNRQTCYFIVYTSTDLKYCIIEKNDSKYWNGGMIDCLENFYMNAMLPEIIDSRHSRNLPLRSIIKKDL
>MtPH-M-1-Ia_p2#DNA/PIF-Harbinger 1086-1520 MtPH-M-3-Ia_p2 very similar. [Medicago truncatula]
MDSLKRKVSANPPSTNNEGQSSKASWRDIKATEYFVKACLDQVTKGQRNGTCFTKKGWQGIVSQFHEQSGLNYDKVQLKN
RYDSLRKEWKVWYNLFGKVTGLGWNFEKNTVDASDEWWEKKELVCESQIFCLGYFYVYIYHSFIC
>Harbinger-4_PGr_p2#DNA/PIF-Harbinger 2619-3125_R [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MDTPTRRSPRKKKGKPVPKKKPDAVATPKPPETSTTNNEDTPKPEEKKRGFPRWSVEEDKKLCVAWLNTSRDAIVGNGQK
AATFWERIHEMHSELINEYNEEKKGAKGFKELPLRPVGAVECRWAHILKVLNKFSGCYSNVERRMKSGKTREDVVRFLSI
FTSLFFYFY
>Harbinger-4_MLP_p2#DNA/PIF-Harbinger 2650-3075_R [Melampsora larici-populina]
MDPLHESSIFPFDSVPLDPCIAESTRLVEKPSDLGTSTATNEKQFTKKNWSSEEDIALCKAWAATSIDPDTGDSQKRNTY
WGRIHSYFKEEIDSVRNQTACERRWAVISHDVSKFCAAFDQATSTHFTGRVQLDLVCAVLDL
>Harbinger-5_AMi_p2#DNA/PIF-Harbinger 2214-3071 R [Crocodylidae]
MTSSSSPVSSPGPVRVRPPVRSPRGANWTREEVRALVALWGEEDVLRQFAQGGRSNAHIYEALAAGMRARGHSRSARQCR
MKVKDLRAQWVAVTGHNRRSGGAPRTMPFMRELTRILAPREPAPAPHPDTSGDTSPEEGTSGLQRPALHSSPAAAPTGSP
GSPGQRLPRPRPRPAAAHEERPATPPPAASSTSSSPAGRRPPAHRRPRTPGGAGRRLARGAPRRAASLAGPGPVVSPSRP
RSPPLPRPCPRPQPPAPPPCPARPHSPGPRFPPTARREAGHRSDLY
>MtPH-A5-Ia_p2#DNA/PIF-Harbinger 2776-3838 via tfasty with MtPH-A6-1-Ia_p2, 1 frameshift and 2 stopcodons. [Medicago truncatula]
MDGSSENQNVRITKRQWTHEEDEVLVEGLLKLVDEGWKADANSFKPGYTKALEKYIHNKFSGCTLKATLHIESRVKLLKR
QYSAIKDMLGPGASGFGWNDAKKMIKVEKEIYRQWCKVIxDILFHNCKFMIIFLALNLYFxTIFPLMQSHPTAVGLYEKP
FPHYDSLDTVFGKDKAAGTVTEDIIDMTIEMEKENVQSTQEGGSGINLNDDDDAENFESQMPETPTANTTAPGSNPTNQS
QRDSTNYRTGKRGGKRVKYNDDASDSMSNSLNKLGEIYAYGVENMKQVFTSCFVHEKHTADRRNQIVSILKEIEGLSDAE
VVMAGMLITKDNNLCDYFFIMDTPGLRKRFVDIV
>Harbinger-5_XT_p2#DNA/PIF-Harbinger 4494-2130 (rev) Via genewise with Harbinger-1_XT_p2, 1 frameshiftand 2 introns (3903:3369, 3234-2678) [Xenopus (silurana) tropicalis]
MQALVNVKEKLKYLFTLMRAVRVQVLVDMTEQKLNTKKQSRAKIQTCANSHLSNNDSEEERPRYISYSSPEDFSDIELTD
KDYLPEEQSEVESEEXDTXPPHPNKARKKQHENRLRNLKFTEFENEALIEKLVPLFDRIIGKYSAKTATALKTKYWKDIA
DHVNSVGVCPRSVQHCKKRYQxIKRVLKKKLSDESKYRSGTGGGPSKKVFFTAYEEMLMPLIHGDCVTGVAGVFDSDRNV
TKDQRPRGHWVGKSARQLRREPQQSPEMEKRRFIVDDNARQCPENVSDYAVFSDDANEAGNDNNANPSECPQQALLKRKV
KSTNSTVTPKILEPEKNXFHNSLINYQKSLMKKMHVVHLDLCIATTCYNKSQGRQASYEAALLKMHLKVKEQHISLLEKQ
NAILDNISNCQQDLSKKLLSVIDSS
>Vandal14_tp#DNA/MuLE-MuDR 1864-5324. 4 introns; from repbase; Vandal_13 proteins close. [Arabidopsis]
MVVITEITDDRYVRTVSGSWAIGADGTWLFISNHNNAVRRLSIGEGEKLASVRQLVREAYGQEYVEGPLHLTYQWPDWMD
METTFGGRTKPVSITSEETMGVFLAMRFELEDLSLFVSKQTVDDGSEDGGTSQTSSYGFADKGKSPLYVNAERSPNYESV
VWKRLMDDEAVLRWMRSTETEGQNVGDSSTNVQQHPVRPAVEAASPMLTTESMDTATEDGDQEEDSTVVEADLLKNLGLP
SINLATESYDSLSEGEAYNDENDYPGGETIKECNFFGPSATNLVEPLGVHLDLAVPLHEALEDMCLNFASFNRDAAPTLD
EQGEEGRVGMELAIRDVVYEGDELFVGRVFKNKQDCNVKLAVHALNRRFHFRRDRSCKKLMTLTCISETCPWRVYIVKLE
DSDNYQIRSANLEHTCTVEERSNYHRAATTRVIGSIIQSKYAGNSRGPRAIDLQRILLTDYSVRISYWKAWKSREIAMDS
AQGSAANSFTLLPAYLHVLREANPGSIVDLKTEVDGKGNHRFKYMFLAFAASIQGFSCMKRVIVIDGAHLKGKYGGCLLT
ASGQDANFQVFPIAFGVVDSENDDAWEWFFRVLSTAIPDGDNLTFVSDRHSSIYTGLRRVYPKAKHGACIVHLQRNIATS
YKKKHLLFHVSRAARAFRICEFHTYFNEVIRLDPACARYLESVGFCHWTRAYFLGERYNVMTSNVAESLNAVLKEARELP
IISLLEFIRTTLISWFAMRREAARTEASPLPPKMREVVHRNFEKSVRFAVHRLDRYDYEIREEGASVYHVKLMERTCSCR
AFDLLHLPCPHAIAAAVAEGVPIQGLMAPEYSVESWRMSYLGTIKPVPEVGDVFALPEPIASLRLFPPATRRPSGRPKKK
RITSRGEFTCPQRQVTRCSRCTGAGHNRATCKMPI
>Vandal5_tp#DNA/MuLE-MuDR 1708-4235 [Arabidopsis]
MFTTKEKTPPVLVTSEVGLLYYLSALRENRGLNLFVKFEEMEEDLQSFDTRGDSSTKRPRQSNLEEECGSKTPKSGVTAV
RDISSVGSKTPTIVLTPRDDEFMEELEQAEANIGSNSGHKSSRNDTDNEGFNNDVEKLFFVDNDTEEVEAVTEKPEDSMP
CGGYDKEFWSNFLTDDYGGSNANELMATGGLDVRYGSNNKVVGSNPDEVVFCTGSGVFDHAIYVNGAGESIKIEHTKKTP
QVMKGKMVGGVGSSQGTRNEVKKLEEVDDEEFDIPPLFEDIEYEIDNLPDLDIDDDGKGIYQGKVYASKEDCQIGLAIFA
IKNQFHFKQTRTKWNCSDEKCDWRILATVMNGTSYYEIKKAQLQHTCSVETRRQYMKRATSKVIASVFKAKYSEASAGPV
PMDLQQLVLEDLRVSASYKKCWRARESALIDVGGSDEESYSNLAEYLHLLKLTNPGTITHIETEPDIEDERKERFLYMFL
AFGASIQVFKHLRRVLVVDGTHLKGKYKGVLLTASGQDANFQVYPLAFAVVDSENDDEWTWFFTKLERIIADINTLTILS
DRHESIKVGVKKVFPQAHHGACIIHLCRNIQARFKNRGLTQLVKNAGYEFTSGKFKTLYNQINAINPLCIKYLHDVGMAH
WTRLYFPGQRFNLMTSNIAETLNKALFKGRSSHIVELLRFIRSMMTCWFNARRKKSQAHSGPVPPEVDKQISNNLTTSSG
SKVGRVTSWSYEVVGKLGGSNFVDLEKKQCTCKRYDKLKIPCGHALVAANSINLSYKALVDDYFKPHSWVASYKGAVFPE
ANGKEEDIPEELPHRSMLPPYTRRPSGRPKVASIPSTGEYKVR
>Vandal20_p2#DNA/MuLE-MuDR 4806-5464 (reverse)1 frameshift from RepBase [Arabidopsis]
MPDIPDDLLAKIVKLVADDRWWLLGPILKAGRRGRDMVYRDNVLKDACIYSLCSDPSDLYYFRNQDTDVVHQGRYRPFFE
RCLKAGNKTAIYYEGLRVVAEGCDLNGGIELLAQLVPEDGXGWRSMCLGNEAMAVHYLEQFGIFHAPLSTQRVRLWGEEL
VRDLRPYRRISHASYRKAFIYPLCKGIPSPDCAMDCALASSGYENFCNDCYLWWLSRKVCQMV
>Rehavkus-3_TC#DNA/MuLE-NOF 1193-4797 [Tribolium castaneum]
MEAVVYSSSLNFCHPYKITSFVKGVERDLTRNKLMKTRPLIFRKDSIRTANMELLTVAGNYQQIKSESVIRKARSEALNL
RKRFNDDNLDLTSMQKSHAEYIKQVSFPLNIKIFSNEQLLVLQNSIDFNLYFDATGSVVRNQSDPKSTVYYYAGVVVTKN
HRVCPVLEMVSSEHATNNIQDLFVRFINFCKESSMSNIPFETVVTDFSFANIHAVCLSFNEMTLNQYLSTCFDLAIHHKS
VPKKIKIIRLCAAHFMKNICTHLNEFVGQSKKSHHKSFIKELIACAFNLTTFEDVKFWFENACIILMYETYNDAVQIALH
NISSIANSLSTNLTKNIGDDDFGIDHSVSVSEDFISHTKLRKNSPFYKEFLKIFNAVVAKEEKHNNSNIYCCKEFMNYIL
DRYIPFLPMWTLIIHTKHSERVTNNAIERYFGILKNEVLERQTYLAPSLFIRHSRDYVLSIYREVKYNIGKEGLARAPKT
KKDLSNGTIQSKRLKKSPSSMVTDDKVFILSENDKISVASSFGSAGTIESQSDQIYSHKETWKSKPVNKRASYFRGTHLK
RQLFADKLDTIQEVSEVPEIIDVDKVPDINVMTPVAEKSFQINFLPNGLINSIEYYLNNFTVGYRDFIVARFDNALGDKC
LNNTEFKKISKHTLTNKVANILNSVLIKKYQLHAATIWSVQRSRMAIVLQKFSEKMPILRNITYMILNEVEDKWVLLKID
IREREVGVFKPFGLKEIELQSYLTQFVNFVKQYNTKKRNLSTFKMIPEDGWRMSAMMSEYTLDPLCSTANGLMVYWILTK
LVSKQSKPLDDSRSFDHEKFIKEIQTLLIHFSDDMTNNCLICGKIELDHTVNWIRCNTCGRWFHTHHDDINTSQNLDSSK
ATFACLLCQKFFNIESSTHEIVKSHLRENALMKNVDYYVECKAMGKTYTVAKYYNYGIINVLSVEDYQDLHGQQWLSSML
IDQYLNLYYKVNCLTKEWFIDYLILESKKSEFIFFNEELQKLPRSFFNELPRLAGKKVILIPILRSSHFTLAVVDFENKT
FHYLNPMKSNTDHTSQMFIRFKKFISEYKKYCSFNADLECFQLKTVEHDYQTDTNNCGIFVLFYIEAILNKNSLKQMPCT
PQQYRINVKEFLLENSDDMQHVCMGCAKEVVTSEENFLKX
>Rehavkus-1_HR#DNA/MuLE-NOF 4495-7422 [Helobdella robusta]
RDDILKILQGNIINIQCFLQQVENTDVIDESQRQATQASHDESVAIVENNSPARGIDISFIMHYNLYVLRQFICNKHCLK
FNIPFLHICNFLSSIPNFQGVHELEEEGKEVSCRTYANCTVHLLSSAVEEEVYQGLREKDATSTERICFAVENAISPCIA
ITNSKRENRSRYIIYLKCKFEMCRLFKVNISHNKIDIYTSSTNYNHNGKLVRQLRGQRRKNLYEQLILQHPSVLREKFIR
SSNAALIKQGNLQNIHSLGVFKNVRCEAMAAGDKAKDDVIDLIERQKFQKTDEIYIQAVSAVPFYATFFSDDQIEVILRL
GQTDLPTIHLDSTGSVVRRLHSKQTIYLYSAVVGLDAGYAQIFDFISDRHDTASVAYHLINFKRYVIKKVNAWPIFMNVV
TDHSMAMINAVLTGWIGVDLRGYLAMAFKWCISECVPKNQIMIKLCCAHFFKNIVRFVKKNFSTKEVVKFYINAFSVILQ
AKSYRRMINLITSFFHITCSLKKTPSLNSHFDEFHESTINEVSHYDLIEHVYDDDDNEVNELETIYESSPFYRKGLQILE
HVNDQLRLVNDEQTEPNEYCNKTFAKLVLKKYISILPLWTVLLNKNGERTSNSKVENCFRFIKHQLLNGSTNLKIGRFAE
LLKNHVDARTKEILLQIPASRKRKIKTVVKECEKNYWGKRKPFKSYFNSIVTVKIPTIICSNDQSANGHSNICITNSNIP
SNKCYYEQIVSRNCYVAKKGNDRLLLSDFQTVIGEKWVSSVLLDYLSHWFTNSIYIPCDLSTTVMFKNFTCSSPIFQYSF
NANYIFFPLVVNNNHYCLITVDNNLNKIFFYNPLGSSILQIKQFEKRFKRMSQRINKQSWENFDFEAHNELPKQMDGHNC
GIFIYMVMDTLDKSKPIGNEFDPIRCRLKIFDDVIANSDNMINECLFCCNESADELWIQCQNCFRWVHRKCTLITCSDWT
KVLYNCNICRSLLGQI
>Vandal2_tp#DNA/MuLE-MuDR 743-3715 [Arabidopsis]
MDIPVFTMVGEWKCKEGEWKFEPEEGIFGRCVRVQETMTYTDFVRTLREAFSLKSTEINPIISYWMPGEMSVLIDTKRPP
VYIDSQMGLETFFLVRGGYLSLNLFVSFNNTVKAFGNTVSRSHGEVSESDRVFDSATNVDENNEDAEEQADVEDDTTEED
EVEEGNEDDDGCDDYLGVDGSIGGSTLYPTTDGSEGIGEEYDYNKWNDVIVEEYVQGNLEEDVSLTQQTAQHPGEFSRLL
ETCTYTGVSVPGGDTGEFSRLLETCTYTGLSVPGEETISPLGYGTRCEGQRDSNLICIDEVTGDEVIDGIGASSTGTLND
NGVVTAAEAYQVYNEFPKLHGGELANLGNDAAPVFDDLLNFRADETQVEISTTGETLFVGSVFKNRKVLQQTMSLQAIKQ
CFCFKQPKSCPKTLKMVCVDETCPWQLTARVVKDSESFKITSYATTHTCNIDSRKNYNKHANYKLLGEVVRSRYSSTQGG
PRAVDLPQLLLNDLNVRISYSTAWRAKEVAVENVRGDEIANYRFLPTYLYLLQLANPGTITHLHYTPEDDGKQRFKYVFV
SLGASIKGLIYMRKVVVVDGTQLVGPYKGCLLIACAQDGNFQIFPIAFGVVDGETDASWAWFFEKLAEIVPDSDDLMIVS
DRHSSIYKGLSVVYPRAHHGACAVHLERNLSTYYGKFGVSALFFSAAKAYRVRDFEKYFELLREKSAKCAKYLEDIGFEH
WTRAHCRGERYNIMSSNNSESMNHVLTKAKTYPIVYMIEFIRDVLMRWFASRRKKVARCKSSVTPEVDERFLQELPASGK
YAVKMSGPWSYQVTSKSGEHFHVVLDQCTCTCLRYTKLRIPCEHALAAAIEHGIDPKSCVGWWYGLQTFSDSFQEPILPI
ADPKDVVIPQHIVDLILIPPYSRRPPGRPLSKRIPSRGENRVCTNIVHSSTCILSITMRRFLTSCLCHFRKRDRKDFYQI
SAHAVDKQVITRRRAKIQSSSGDKFLSRPI
>MuDR-18_SBi_p3#DNA/MuLE-MuDR 14105-14794 50% similar to MuDR-18_SBi_p1 [Sorghum bicolor]
MNIAGNHGGIIIQNYFNSHVLNDVVNSLSNIQRHYIVKHGFESFLSINSFDVPLGLVQWIIQHIHIPSFQFQHMKKKIQI
TASMVNHIFGFPSGKMSVSTTISKDSSSSIKILKQQYIANGMTTRQGLIDTLLHNEDEVSFIQQFVMLSIDTVLCPGLQN
HLNLDYLCCVADISKIKSFNWNSHVLHYLGLEILKFQAYIDSYSAGYPSTKINVCGCVPLLAVSNFLFV
>MuDR-5_VV#DNA/MuLE-MuDR 894-3320 [Vitis vinifera]
MLLYEGDWVQNGNMYYFEGCQGKGIELKKTTTYEELLKIVCHILKVDPTEHNLSMKYVFNGNIPSTPIQLRDDGDVKFFI
RLNCTDGKLPVPLCITIEKRSGNHGYESIINTDFGSHTLSGVEKEINMDPIFINSSESLSGFDDENRTRLSYDPLNCFDS
HNLNMNKDDEDGGMNVNPNKDSQVMQIDVMEKAVMEYESHAEESIEEPFIVGYSEIGDDYMEEHQIYSNKKELQKKLCMI
ALKRKFQFKTLKSSTKLLSVGCVDKECKWRLRAIKLGNSDLFQIRKYHSTHTCSLDMISRDHRHASSWLIGESIREIYQG
VGRQYRPKDIVADIRNKFGVGISYDKAWRAREFALSSIRGSPEESYSALPSYCYVLEQKNPGTITDIVIDHDNQFKYFFM
ALGACISGFRTSIRPVITIDGTFLKAKYLGTLFVAACKDGNNQIYPLCFGIGDSENDASWEWFLKKLHGAIGHVDDLVVV
SDRHNNIEKVVRKVFPHASHGVCTYHMKQNLKTKFKNVEVHKLFHDAAYTYRLSEFNVIFGQLQMISPRAATYIIDAGVE
RWARSHSTKKRYNIMTTGIAESLNVVLKDARDLPILQLIEELRNLLQKWFANRKQQALSMTTELTTWADGELRVRYNTSS
TYEVEAINSMEYNVKYNGVSDHVNLHNHSCTCRRFDLDHIPCSHAIVACRYAHMSCYPLCSKYYTVNSLLSSYAESIYPP
GHQRDWMIPDDISSRVVLPPKTRRPAGRPRKERIPSGGEGKRRRRCGRCGDYGHNRKSCKRPIPLHYQNDNSGHTEIGMQ
DCSLQSENE
>MuDROS2#DNA/MuLE-MuDR 1227-3908 via genewise with 6175165_Ath (2 introns) [Oryza sativa]
MAGEYWTLRVFKHDRGPNTDILEKKIERNNICYSNLIRLLETEGYEASDELFFTSSDTYYCGTLTKIEGETHVKDMIMEN
DKSKMADLHLFKAIQRTPFSPLKIDNVEVIAGSSQQEDNIDYNPELIGVADDQHSISSGDTDHEQEKVDYVEKLNEMKRQ
REDPMTHCEGDTDIDDLYTPEDADVDLGVADIDDMSCELSDPPSEDGGLSTLECETDEENKPPPGKRRRGKGIQVQRIYF
DESNMMDTSQLCKGMCFTDAGQFRKALKSYHIVKGRDYKYTRNKADRIKVKCSQDKVKCDFFIRASQVGSEKTFMVREMI
APHTCPSHRNCTRVDSTWLSERYEDDFWSDPNWKVEAFMARCLRETGTYISKSKAYRARRKATEKVLGNKEKQYKRIRDY
LQTLIDTNPGTTAVVTTINRDVLGLAPRFSGLFICFSAQKEGFINGCRPFISIDGCFVKLTNGAQVLAASARDENNNMFP
IAFAVVGKEDTDNWTWFLEMLKCAIGSGEEHGGWTFMSDRQKGLMNAIPIVFPDSEHRYCKMHLLQNMGNKGWRGEKYKG
FVDAAIYATTVWDYDKAMEDLKKLNLKAWEWLIAIGKEHFSRHAFSPKAKSDLVVNNLSEVFNKYILDARDKPIVTMVEH
IRRKVMVRLSLKRQGGDAAQWEITPIVAGKLEMEKNHARYCWCYQSNLTTWEVHCLDRSFAVDISARTCACHKWQLTGIP
CKHDVCALYKAGHTPEDYVADYFRKDAYMRTYTAVIYPVPDEHRWTKTDSPYIDPPKFDKHVGRPKKSRRRGPDEGPRVQ
GPARKTTSTCSNCRRDGHTCSNIKVSLTLSILRPIFI
>SHAMUDRAV_MT_tp#DNA/MuLE-MuDR 3530-6213 via genewise with MuDR-6_VV, 1 intron (5319:5401) [Medicago truncatula]
MASNINVFVYYNGEVKQNDSGIFFQSQYTKGFKVSMASTYLHLKKRIAEKICLGDNMVVSEIMCRNPMFVGATAIHYQAL
RITDNDDVEFMFNVHKSHSSLSYIELYVTFEMKNPTSNFELNYPSSSSQHQNLPQQQYNTQHCNPSSSSSQPHYNPSSQP
FQSQWSQNVYEPPQLITQPHPSQTPSRSTQPETLNDEINIFTSQFQDQPTDEVQDDEDNDDEELLAAQNGDENEEDDEDD
LPQLPILPIRASYNPPRSMRNVNDDHSTELYHSMALPVDQGIAPGMQFHNKNDCILAIKYYHMKKSTDYIVKKSDPERYV
IKCKDTKCGFKLRASWRKKTDKWEIGNMNDHTCVSTEMTQDHHKLSYNVICESVKSLLYMDASITVKVIIAHIREKFNYT
VSYRKAWRARNKAIESIYGNWEESYEELPQWLMVMEKDLPGTIIDFQSDPSTEVANETVFKRLFWAFRPCISGFEFCKPI
VQIDATWLYGKYKGTLLLAVAQDGNNKIFPIAFAIVEGETKEAWSFFLKNLRQHVTPQENICLISDRHVSIKSAYDDPQN
GWHDAPTSHVYCVRHIAQNFMRSFKDGELKKKVECMGYAMNIPTFEYYRSEIAVADRKALAWVDNIPKQKWTQSHDDGRR
WGHMTSNLVESQNNVYKGIRGLPITAIVKASYYRLAALFAKRGHEAAARVNSGEPFSENSMKYLRNEVIKSNSHHVTQFD
RDRYTFSVRETIDHKEGLPKGEYKVDLQNKWCDCGRFRALHLPCSHVIAACSSFCHDYKTFVDNKFTNECVYAVYNIHFD
VVHHQTYWPNYEGPKVVPNKSMRRAKKGRPPITRIRTEMDDVETERRCGVCRMPGHSRKDCINIRHQ
>MUJITOS2#DNA/MuLE-MuDR [Oryza sativa]
MAGQVSTGNAAASASMAGEGQEEDPAAAGTSHLVSFSPALAHGKEGHGFQSPAPMDAEIAGDVGAGGERITQVISSSSLI
IMFFNQHCLMMDDVHLYVKDDHDHDNHNISYIVLIVYNFSYQLIVQKVDDKVVQTLIVPQVGMSFESKDKAYEMYNTYAG
KVGFSIRKSNVKRRSNGTIYQKHMVCNKQGQQETSSSLDTTRTCCKARVQFSVCRKEIWMVQKVVLEHNHDLVSPNKSHK
LRSQRRVIEADRQLIGQIREAGMKPAQVYGFMKEWYGGADKVPFSKMDCNNEIGRERKKYLESNDTQTLLEYLRNKQLED
PTFFYAIQVDKEDGRIANFFWADGQSIMDYACFGDFVSFDTTFDTNKCEMPFAPLLGTNHHKQTIIFGAALLFNQTIESF
VWLFETFLTAMSGKHPSTIFTDQDAAMAAAIAFVFRNTSHRLCLWHIYLNGGKNLSHVIHKHPNKFLADFKRCVYEDRSE
YYFNKMWHELLSEYNLEDNKWISNLYKLREKWAIVFRNSFTADITSTQRSEGMNNVYKKRFRRKLGLSELLVECDKVSAT
LRENELDADFKSRHSNPVTYIPNLPMLKIAAESYTRSMYSELEDEFKQQFTLSCKLLKTEGATLTFVVMPMEYDHEATVV
FNPTEMTITCSCRKYECIGTYT
>31201925_Aga#DNA/P gi|31201925|ref|XP_309910.1| ENSANGP00000017213  extended with gi31208543. gi31211983 is also same, very poorly spliced. gi55244298_ also overlaps. [Anopheles gambiae]
MIEERRRVLYNNNENECKSCDQKDKTIKQLELQICTLTARLDEAKKLKDANLILKEHLDSAVKENTALKKQNTCLENDLK
LVKSTSIQKEDFVPEMKKVLGDTLTSNQIDLITKRKKRVRWTKEEISKAFTVRYFSKRAYGYLGNDMKIPMPAPSTLEKY
SQRINLKQGILDDIIDLIATVTKTFTKRDKECVLSFDEMKVESVMEYDPAADEILGPHNYMQVVIARGLFKNWKQPIYIG
FDQSMTKDIIISIINRLSEININVVAIVSDNCPANTSCWKELGADYNNPFFPHPVTKNNVYVVPDVPHLLKLTRNWLVDH
GFKYKEKNIIIEPLKKILEGRMAAEITPIFKINTGHIRMTSQEKQNVRKAAQLLSRTVAISLRRYDDTTEASDLADFIEK
IDLWFSVSNSYSPFAKEDYKKSYNGNEMQRKALNDMRELMENSIALGKSSLQTFQKSVIMQTTALQMLFDDMKEKHKNAV
KFISTYKASSYSLYKAANVGPSLLSILNQDVLENFFSQVRQKGGVNDHPSPLSCLYRIRIIILGKSPTILRNQTHTGQQN
NQEPDEYLTTVEPNVEESNLNEEPEEYIAATVFSGAEIVPNFPDMQRMEKANGLISSEDSDIISTASSNPLTMTEQEEDG
LQYIMGYLAKKFNEKYPSLNLGIQTFKIFNEHSYCQPPTFVDHLSLGGLHKPSEEFMNIGKKMEKIFQKLHKNGKFNKKT
LIVRRLAVNIQKQVELPSEIVKSFAKQRVIVRMRYLNMKASFEDNGTTSRKRKSQQQDPKGIKKMRRIIN
>P-23_HM#DNA/P 180-2768  [Hydra magnipapillata]
MPKKCCVVACRSGYKKKKNDDTVEGFITKTVFNFPSDINLCSRWIKFINRINWKPSKFSGICIDHFEEKFIKRGKRNTLD
FTKNPIPTIHTNKDCFLKPSLLPTPITLRKTPTKRPYSHSLLDETVVFNKLDKICSINDLTEQVCPQNFLFKKIYGGVIY
YRVIIENITSSTNIESINVDNNLHVKLYHKGNLIPLPQWFRQNNKCTLTSVSMLENLVSYMRNRVEEKEKNILSELYSFM
YYESHGRELYSNELIRFALVLRYTSRQAYNLLLDEFPFPSFSYLKALTQGGIEPIKALKYLLKEEKISSDSVLLIDEMYL
QKSVQYHGGKFVGKDENGELYSGVVVFMLVGIKRSIPFVVKACPETSISGNWLMTEIEECLTNLFDANFKICAIITDNHS
TNTLAFKKLIKKYNSTENFFFYYGQNKIYTLFDSVHILKNIRNNLLHSKRFIFPKFNFDKFEDSINVEAGDIRWQLFHQV
NEKDNLLPANLKKAYKLTPTGLHPGKNKQSVKLALQIFHESTYSAIKSYFPKELSAANFLYLINTWWTISNSKNIYNTNN
KIGNAVVANDQKPEFLNAFAQYVSEWYNTNLQGCHKLSLSAQTSNALIVTLKGTASLIKDLLSEGYDYILTSRFQTDPLE
KHFGKLRQMSGGRFLVSLREVESSEKIISIKSLIKETLALNTWFNNEVPVNNDAKELETALLLLQNEIEEYDLCESSKEV
VIHVAGYITKKIKSKFKCSLCQDLLQTNKISSPYMEILSRGGLTEPSENMVEYVCSLFCILDITKELLLTKYSNKLKNSA
LAALELFKNNICFMCSDHLETGRQYIHTTVINIFYNNEQSIQNGKIRKDEVVAFKNRHNKKQT
>P-22_HM#DNA/P 255-2711  [Hydra magnipapillata]
MPLKCCIPLCKSNYHSTESKISIYKFPKNPEERKKWRDVIPRANFSISDYTAVCRLHWPDDAPFETKYGKQRPLNPPSVF
KNIPPSCLPTPSNKVRKTVTSRGFRNVFPDEFNVFLKDDELSFAEIQSIFINSNDVIVFQFNKNSVHIQSKMYKLGVPLF
LLEIFDNYSFTAYHNGTTCNISSLTANNLKLIKTRSALFEAVRFLKHKESSHQSNILFEHLNVMRKVNVGEVLYTPDIIC
RAYEYFAMRRSLYDRLCVDYKLPSIRTLTRLTSKISSMEDLNFINSIFMNLDPLKRTSIILIDEVYIKASLLYQRGALFG
HSVNYPERLATTILSFMIKCLFGGPEFICRAQPVSNLSAEFQFAQCQQILDAINIIENSKTLAIITDGNRVNQRFFRTFK
TFESKPWLTTSGTYLLYDYVHLLKCIRNNWLTEKTGQLCFLHNGELTLAKWSDLETLYKTESISLLKLSKLTAKSVYPKP
IERQSVQFCLSVFCEETVAAFRTHPDIENKEFEGTAVFIEKIISFWSVVNVKAPGAGIRFRNELRGEIHSIDDQQLQLLR
DTADLAKFMKPTGKRFKQLTHDTSTAIEHTCYGFIDLVETLLSTGSKYVLLGWFSTDPLEKAFSKLRQGSGGTYFINAKS
VLEKIHIQHTKLILQLDIPVNGVDGHICDICCRDVSTDEKELLDNLHDLESLVNKSTLLAIVYIAGYVQKNEINIYDDTT
SYYNEYGDYLNSLNRGGLEIPTDTLVQWSIFCFLFFQGATGPLCRTFCVTQFQFIAAKYRFKITKRQCRIYSNILLKNYA
LISTPNSSRESKAKILKLS
>P-35_HM#DNA/P 968-5119 Bad quality fragment, via genewise with P-34_HM#DNA/P, many stops and shifts, 5 introns (1881:2752, 2847:3523, 3686:3762, 3946:4730, 4864:4956) [Hydra magnipapillata]
KTTDICPKKNYCLKxRSWKMIKKQIATKSLHLQCRINQLIKKEGLIVDGETHKVMKECLIDKNNNPFSESSPQYLLWEQQ
KIQVSRKDKRSMKWNPVLTRWCLSIYLKSPETYKHLTKSEFMYLPCENTRLKYIFTDPGCGFNADVIYRLILKADIKNLK
EHEKNVSxVFDEMKIKSGLVFSKTNGKIVGLTSLNDALEEFKTKLKANKSINSPTLAKYVIVFMVRGIFSSLCYPFGHFA
SSGFNSDQIFNCAWEATHILECIGFKVRSMVADGASPNRKFFRIHLAENYENVKDTTVHSTWNICSQTFCDVPHLIKTTR
NNLEKSHWNQNFRNLMIEDQFITWPQIMNVYEWDLxMFHNAVGLxMGHKLRDExIELTPQSRMLINLAAQVLNQTVVHML
EEQGKPETRCLQKFINLIDTFFDxLNVSRQFNKTRKPALDVYKTHLDKRFEWLNQTFIKFLNEWEQASQNVKNLSIKEKA
KLCLSKQTLEGFRITVHSFTDLGSTLLQEEGVEYLLSEKFSQDPVEEYFSKQxRRGGGNENPCLEEFNRN
>HARB8_ZM_p2#DNA/PIF-Harbinger 3008-3796_R [Zea mays]
MCAISTYPSMDPANNATSSQAMSNPSNAQQFPPPPPLWPTGYMQQNPVDCNIMGNINFPSPGQGPTTMWAPIQPGNTSSQ
STMIPASQSALYWNHYMNFVRNPLGSVGMSPYTDSYPPSLSSTPLQGSNTIPQMPVHLESDAEHSVQDINSPEKNAPPVQ
KQKKSKEQNFTAPEDRLLCTTWLQISSDPIVNTGQRREGLWARIEKRYNEQRGEFPCRLNRALSSRWDKIRADVSKFSGY
YARVLREKQSGLSDEDKVRLLKR
>HARB4_ZM_p2#DNA/PIF-Harbinger 2800-3864_R 1 intron [Zea mays]
MDQYTEGEPSHGHQPFVYTEGIDLTQFDDDATFQNACNIDVNLQASENNTTPPTQRNKIVKKTVTRRLANYSQAEDEVLV
SAYLNISKDPAIGTNQSGKSYWRRISEYYNEHTKAPTSRTQHSLEHRWGDIQRETSKFCGAYDKVIRLKQSGKSEDDQVK
DALQMFEGIHKKPFRYIHCWYMLRNEVKWTTWLSNTEVIPPKVVPNETDNVSTPSDPFRRPPGRDRTKKARSSNASMNST
ACIEMIEKFQLDRAKFEEQAATSANAEREDLKQYRERKMKLSEDMFKLQQQERDDRIMNMDLDKVAPYARNYYLSMQKAI
LSRLPPPEE
>P-11_HM#DNA/P 139-2721  [Hydra magnipapillata]
MVNKCAVFNCRTGYKSKKNESSSLSASKAVFSFPKDTVLEEKWMKFVNRKDWKPSKHSVICLDHFEKKYLKYGKRVTLKY
ELNPVPTIYSDEISIPSSIIPKIPTFRKPPTDRHSTIPDEIHTFQEMDKIKNIDMLHESNSPNGFSFQRYESFVLYYRLF
FVDTTPFIESIRIDNNLHVKLHYKSSPLPLPKWFRTINNCKLTSLSILNNLVSYMHNLVEENSYGLVNELSNLIFYKSKG
RPPYSSQVLRFALMQRYSSFQAYSLLLKQLPLPSMSLLKKLVSGGIDSIKSLKLLLNEGKISNDCVLLFDEMYLQQSCEY
HSGRLIGQDTEGNLYKGIIVFMIVGLKKSIPYVIKAIPEISLTGDFIKDEIEESLNTLRSAGFNIRALIADNHPTNVSAY
SKLLSVYGSEKPEENFCITFNGHIIYLMYDSVHLLKNLRNNLISTKKFIFPSFQFTDYIFNIKVSAGDISWGLLHRVHEK
DETLSANLRKASKLGEKTLYPGNNKQDVNLALNIFHETTSAAIQSYFPNEFSASEFLKLVNLWWVISNSKMKYSNHKFGN
ASVMGDGKPQFLRAFAHWIDQWQNSQYSSTERYSLTAQTSKALIVTLQSTSSLIEDLLFEGYNYVLTSCFQSDPLERHFS
KYRQMSGGRFLVGLREVITSEKILQMRSLLKENFDFWKMDLKTFKSVVNINSISELFINDIQECDLDDNSKEVAIFIAGY
ICRKLLKKVKCELCSLLLKSDLIDLNTEYIELLSRGGLITPSKLLANHVIICFAMLDAVKKSLLTIEILDIRKVSEYILY
EYNLNHSFICEDHLKWGLSLVNQTVINIFYNNEQKILSNGKRKDAVLSFKRRQREKKKKEM
>Lu-P2_tp#DNA/P gi|422517|pir||B46361 P element homolog (Lu-P2 element) - greenbottle fly [Lucilia cuprina]
RPWFPNPTNAADKVFAFADAPHLLKLIRNHLLDSGLVVNEQLLTPRTIADVINHTSASDVSITFKLNDDHLTVKGAERQK
VKLAAQLFSNTTANAIRRCFSLGLDVYQATETADFIQLVNDWFDILNSTLSTFVYPGKEPFGHNLATQIKKLDEITKIMA
SPIIPNKKVLEPFQRGVVITNKALIMLHEYVGERFNMQYICTSRLNQDVLEHFFGALRSKGGLNDHPSPKDFKYRMRKYI
LARNTEHLSGTGNVGYDTTEWLSTSDTNVSFIESETKLSNEPLELEEISEEPLTNVLDDLDGSNFDDMGTLQVDALEYIA
GYTIRKLKLREYESQKNSYTWVDQVSKGMLIKPSSEFLEQLKKLEAVFYTLNGLEISHCDNIHQRLVERSNNIDLPDVVK
CFFFKCRIYFRIRHLNQRLKKQKWNKEVSKKMLKIKL
>31211253_Aga#DNA/P gi|31211253|ref|XP_314599.1| ENSANGP00000019810  [Anopheles gambiae]
IPMPSISTLQRYARKLDLKQGILNDKLIFIENLAGEFSEIDRECVLSFDEMKVCKNFEYDPAANEIVEPCSYLQVVMAWG
LFNNWKQPIVSDNCQANVGCWKDFGAHNYKSSLSSPSNQKKKIYVFPDAPYLLKLIRNSLLDTGLKFKDNHISTHILREL
VLERTKSETTLLFKLTQHHLCMSPQERQNVRKAAELILRNTATALRIYFPTRTDAKPLADLIGKLDLWFNISNSYTPVAK
IHYKKSFNANENQNQALNDMFDLMSKAMPTGKNNMFQKSTLMHITSLRMLFEGMKEKLQITFISTHKLNQDVLEIFLSQI
RQQGEIYDHP
>P-1_CR_tp#DNA/P [Chlamydomonas reinhardtii]
MGTKAGRQAIRRALELLWALKATILLVYLSVSPQFITFSSAMGRDEQKQYSHCYTCGNKVLSYSFIRVWRGGSQPDWCKG
GQGCCSLTVNGSKHFNSCQLHINGSHYLSATRGPGNPELPITLQPPPAKVGLRVCFECAQHNSTVQAELQQGYEEEQQHV
LRRSHRRNASSVSGVDLDTFDPPPSDKQSETPAAPSPPALEQLTPAPTTGDAVAADSGFTIRRQKSSSDSAFYDAAAPLY
SYITGLDSPGSEFSFTSRQMKYFVKTVNLSNGLHSRKRSNYFVKQTDLFMTSPAGRRLTTITPPMSEAHLNTSPAAIMAA
AAEAAAAFDVLECIAPSERLDSLLAAFSPTAKAGWETWDTRVTAAWRCQLVQQHSHTGDKHLRFDCTTGSHYHNRLSVVL
KPDLGFSVQHALVAVQLPADAPSADRLTTAVGHATAARQQQSAEEHKAVQSKADAAAAAAASAATAAADRYAQALKNSEA
RIVELRVQNFTLGQDLAATQEQLLAVQAELEASRAKMTELSADESADLVTLLQHEDVQAHMKENPGQAAFWRDQLEYVRR
ARQGGKMVNGMRWHNSTLQFALGLLNQGGAGLYERIGDQLSLPSISQLLNYKGFTACGSGWHTPVMEQAAELVKMAGAQP
DGGLAFDEMKISSGLVFNIATNSFVGYSDVDVGTEAQRLHQLLGGKPPLPSAAGAAAMGSESVPPPALATHVLHLTYTTL
GPKTVRASVGYFFTNGVSAVELAPLVSHGITQLRAAGLRVHYTVCDGAPENRKWMELMADGELAKQVAEECNITMPSANP
TAHLRCFRDPADPTLPIIMLTDGPHLIKKGRNNIERSRSGTGANGRNTVEMLWPDDSGWVELSCPAPPSPWAPPSPAPPS
PAPPSPAPPSPAPPSPAPPSPAPPSPWALPSPAPPNPAPPGPAPPSPWALPSPAPPNPAPPNPAPPSPAPPNPAPPSPAP
PSPQWPTAAAQPVAATPEEVGVDARTAGEPPADIKAAALRLRGFVRLFNSTMMSLEREEPIESTDDSFLVQLLRNGETVY
SWHEKLRQDEKDKKLPTTGAGRKGLSQECYSDFQVTCYGVVALVRSYISNSPQGSQPRSISLATLNQNCVENAFSQLRGH
GQNRCPDARRVMDGEQHLRTNEVLIAANLTRARHQRNGSYAPASAASAGSASVDAVDSLLHCRRRGPTRAAAASSTWSLA
DLSNSTQPAGDQPSWTATVAAAAGLRQLAWQDLVGTGIFKAHCSAVPQLVAALQPDSCVSHAWGAYCAWLLPAMEDALVK
SNGTTAATKHVFGAQHAAPCYHAWSWLCAQPEVGPISRPPFSATTPLVPARGRNTTAAEPPSATMAEWQRLGQSACLVHS
YVFAAAARVGVLRGLLLPAAQPAAAPSAGRPKKQPPKQQPALPPKEATFELFSNRTACSRVTGWALHSTLQNATNLAKRS
KTAAASSQARLVEELIEARTDGCFRRSFDDDLLPSLKLGRIVTPKPSITDFFEGLQRGLISHVKSASSVLRGGPLVVQGW
IDEVRYDLAAWGSFQAACASAGVSVQHSNAQQQQHYSLADLRALMGVLVTKYVHANLEGLLRHLKVLVQADKASDRALRD
ERRADAATAAKKGKATTAAGGADGQRRGRKTAAPAAEAPEVESADEPDSSDGSDGSDSSDCESTYGDDFVCQLCNEPEPA
DAMLLCDSCDKGYHNFCLTPRVDGIPDGQWFCPNCAQLAAPAAAIARKRAVDAMPAEAKRTRSAAAAGAERNMAASGVGA
AAAGGAVVAVVISAGAAGLATGAAVEPLAPKRGRAKRGLPAEAPPAQREGARKRLPSVRLND
>P-5_HM#DNA/P 243-2789  [Hydra magnipapillata]
MPNKCCVYACHTNYQSEKNKISSEVNKISVYRFPSDNVEREKWIKAIPNSNLVVTKYTVICELHWPPNFDTVIVRGGKRR
PKNPPSVWLGIPLSQIPTGYPTERSTKRSLSGIRSTIDDELDTFLKRDKATFCDIKNKFIDSSDHQYPVISFMVDGYVVI
QSLQFFNGIPFFVLKIYENLTFETFHYGIKCHISSLTVNRILTVDSWSKFDEILRFLSSLKIDNKKEVIMQHVSVMGPKL
VGDKLYTPEILIRSFVYFLTSRALYNRLRNDYQLPSISTLTRITSKISNINENKFIYSIFNSLPDKQKLCIILHDEIYVK
KSLLYHGGTIFGRSEDNPVELSKTLLGIMAVCLNGGPKVLIKMIPISKLRSDFLFEQINLTSQIIDSVSANVKAIICDGN
RVNQAFFKMYTFIPGKPWLTVDGKYLLYDFVHLIKNIRNLWLTEKTQELIFDDNGVTRIAKWTHLKQLYNAESRSFLKLS
DLNETSISPKPVERQCVLTVLRVFSEKTYAALLQHPDMIHIDVNDTAIFINKVIIWWKILNVKAIGADTRHNDPLQAVIN
NPDDNRLNLILQFGDMALKMAGPKGKRIKQLSKDTATCIHQTCYGLVDLCRYLLNTTQNYVLLGQFTSDHLEKEYSILRQ
GSGGTYFLSVQQVIEKLRIKHASLLLKLNVDIDNFNVKSGHQCALCDYKLSEDCCEILDNLQDLESSIADDVKMSLIHIA
GYVTRNDKERTDYELLDQTTFYYQKYGQFSKFLDRGGLKIPTDNSCQWTFFCFVVFQIVKDHVCRKSLSSIFMIISDYYL
LDMEEHHCVILSNIFLNKFMYHCHSKIWQRTCTKIIKNLLKVYLVVYCL
>P-1_NV#DNA/P 1-1095 (fragment) [Nematostella vectensis]
TLEDIPQSKQQGRPQGCYLAVEDSDVCAECGKFTAVKKGKENQPRSLHAPVLKTNPERIKLTLQAQRIKCAQLEKELGKM
RAELERSSMQIDATLSDDFLTILDSADQKMTPFMKLFWQVQKKLFSKTSTGVRYHPMIIRFCLSLAAKSPSCYEELRNSG
VLVLLSQRRLKDYRNRIKPRRGFQEEVIEVLKAETSSYFDVQRYVILLFDEMKVMANLVLDKTTGLLGDPDLNFAALERQ
GDIASHALSFLVRGVCTELKFGFAHFATTGITASQLMPLFWEAVCILETSCNLWVIGATSDGASPNRRFYRLHKGLDGDA
GGDVCYRTTNLYAPHRFIYFSDAPHLIKTTRNCLKSSGSGSCTR
>Mariner18_CB_tp#DNA/TcMar-Mariner 167-1189  [Caenorhabditis briggsae]
KMSDQKFRLRAFLWHQFKEGKSAAEAHRSLSPVFGEEAISESQCRRWFQRFRSGDERLEDESRPGRPEQVDNDALRAAIE
VDPCQTTLSLSEQFDCDFSTISRHLHAIGKTNRCGKWVPHELSDSNKERRVEVANILMRRSKNRGFFDSILTSDEKWIQW
DNNGRKKQWLSPGETPKPTPKPDIHGKKVMICVWWNTRGLVHFELLRPGQTVNADLYKDQLDRVDQALKRQGVDTSTTLL
LHDNARPHTAKIIQQKTQELGWEVLPHPPYSPDLAPSDYHLFRSMQHHLAEKKFESGEEVQIWVADYFESQPEEFFKKGI
AELRTRWQQVVNNNGEYLID
>Mariner4_CB_tp#DNA/TcMar-Mariner 159-1181  [Caenorhabditis briggsae]
NDMFVPTAIHIRHVLIYLFLSHTTMKDSETFLKNVYNTHAPHYNTIRNWFHRFEKDDFSLDEKDRSGRPRELDLDKLKHA
LQSDPFQSSRELAVTFGVHHSTVLEGLKSLGMRKLFGRFIPHHLTQANLDRRVDDSITLLTLHAGDRWLDRLITGDEKWV
FYDNHHRKSQWVGEGESPQDVPKPDLHPKKVMLSVWWGVDGPIYWELLPEGKTITGDLYTTQLRNLKKAVDRSALKDKKV
YYQHDNARPHVSKQVKQELMGYGWNVLPHPPYSPDLAPSDYWLFGDMTRAFEGRSFNSRGAVEAALKQYFASRPAGFYRN
GIHKLRERWRHVVDNDGQYN
>Mariner32_CB_tp#DNA/TcMar-Mariner 241-1139 wised with Gtmar1  [Caenorhabditis briggsae]
NINRAFXKEVLTKKTVQRWFTKFTCGDTPLEEKKDRGRNYEVWWKGIRDxVEGDPRSTVRELLAALGVSIGTILRHXKKL
RIQKKLDKWVSHELNNCQKLQRYSSLRDHLIRXKNDNFLNRIVTYDKERFLYYNRMQSAPYVVESQKVQHLIKPEIYQNE
VMVTLXWRAFGFIHYNVLKXEKLTFXSQLSKNRKNLLSKLRSLVKKxGTILLDNNSISHVAIMTAQKLNTLGYKIISYPT
YXADISSIDYHIFKHLDYLTRENQFIKDDYVKKAFQGFVTSWPFGFYHHVIFKLVYCRQKCTDSNG
>Mariner-1_DBi_tp#DNA/TcMar-Mariner 210-1268 Mariner-2_Dro_tp near-identical. [Drosophila biarmipes]
MDQRICIKFCVKNKIKCSETLEMLTVAYGETVLSKKNVYKWYKLFQDGREDANDEPRSGRPSTSTTDENVQAVKKIVLEN
RRITIREVAEDVGISLGSCHEIFSNVLGMSRVSAKFVPKLLNFDQKNRRMSIAQELLDDVNDDPDLLKRVITGDESWVYG
YDIETKAQSSQWKSPGEPRPKKARQVRSNVKVLITVFFDYHGVVHQEFLPYGRTVNKQYYLEVMRRLREAIRKKRPELWK
NNSWLLHHDNAPAHSSLLVRDFLAKNNTTIMPQPPYSPDLAPCDFFLFPKLKRPMKGRRFATIEEIKTASLEELKAIPKS
AYGKCFEDWKNRWHKCIVSEGDYFEGDNINIDK
>Mariner-1_ACar#DNA/TcMar-Mariner 163-1230  [Anolis carolinensis]
MEPCADGRSMRLKQRAVIEFLTAEGVTPKEIHQRMQAVYGDCVDVSTVRRWASKFKDVEVGTSDLRDKQRVGRPVTATTE
FHKQKVDRLIQDDRRITQREISSIIGISQERVGHIIALLGYRKICARWVPRMLTPEMKAHRLEICQELLSRYENEGDAFL
HSIVTGDETWVHHYDPETKRQSMEYRHKDSPQKKKFKTQPSAGKIMATVFWDADGVIHVDFLERGTTINSERYITTLRTL
KRRLTRVRKEKGNVFLQHDNARPHTSHATTAELQRLDLTTVRHPPYSPDLAPSDFHLFPIMKEDLRGHHYASDEDVERTV
RRWLRKQSVDFFRDGFRKLVHRWQKCIQLSGDYVEK
>Mariner3_CE_tp#DNA/TcMar-Mariner not derived from repbase (frameshifts and stopcodons) but is  gi|17555746|ref|NP_497494.1| transposase family member (3D146) [Caenorhabditis elegans]
MCAVLGDNSVSYNTMKFWFEKIKKKNYDLDDKPRSGRPRLDIDEDISRALEDDPRSMSREISATLKRPHTTIINHLHESG
RVPKFGQLVPHNLSDSQKNLRCDLSLSLLTRKRTTDWVKDITTGDEKWVLYVNHTRKKQWVPVEEHAEPDLKGELHEKKV
LLSIWWDSMGVIFRELLPDGATINADLYCIQLEKVVHAHQLHRPRGSKLLLLHDNARPHTALKTRQKLQTLGIEVLPHPP
YSPDLAPTDYHLFRSLQNHLAGQKFHDRKAVETWLDDFFASKSQEFYAEGIAQLPLRWQEVIDTNGEYITH
>Mariner-2_ADi_p2#DNA/TcMar-ISRm11 1555-2769 R  [Acropora digitifera]
MLQLKVFYNLLSEGEKCEVIMVSEDTISCCDELMTVIRQNIESLCFIPDTELRVQYEDDEGTYVNLKEESFPDALRCAKP
IATFRRLKLRLNWQPRSTPELVFAKRLETRSKNSEEFQSNETNSVVKGSSSSTTSTAAKKQLTYTSTTTDNKPPDSIDQK
ATSPARKQSGLSAATPTTAAENETLANTYKSPLDLLIQDQEKVLSQSIVERDILKQEYEIIATKFAKHVGVDYSKPACTS
CHRREGHNRANCPFKGFPCKSAEFCGDLNKHKDEKDTVTLAWNRLQASNKALEKQMENLSSKRALKAQITQSFSQSLRTR
LINECKERYINSLGGENWRQINMDLKKLEAHFKGKVPPISVNLIESLQDYEKKLQTTPQTARNPENPVRNLWELKGLKWP
EAENH
>49077172_UM#DNA/TcMar-ISRm11 gi|49077172|ref|XP_402482.1| hypothetical protein UM04867.1 [Ustilago maydis 521]
MTPPQKRARQTLSDALKKLIVESVVSKGHSKADVARKYNLSFSTDVNTMLDYIAQHPAATLEEMREHLRQQGGPQISVTT
TQRVTKDRCHCSLNRMHIDHDRHQDEQTIAARQRWIQGLESLELQGFSLNDAVFFDEAGFNLHLTRSASRASVGERAVQR
GRPADRKKNMSLIVAVGREGLIGAHTHVGGFTSQLLIDFLKSTLIPELRSGPPRIFIMDNVRSRHVPEVVSTIQSAGHVV
YFLPPYTPWFNLSERVFAKVQPIVSREDLQNHTTLEAVIYHTLSTLTAEDCQGWVKETQRWITVAKQGHKLGEHRDAHDA
LAHHGLLPNQQAADAFNGMATVFPIELKVMRYDCYDYM
>Mariner-7_SM#DNA/TcMar-ISRm11 661-1611 [Schmidtea mediterranea]
MENGEDFYKFGQLLGFSKSSIKTIIYKYKNFAIVSKGRRGGREKRISEENGNKLLDYVENNFYASLEEMRNFLMQRNCRA
SKGTICSYLRNQLISYKKVKPSIAARNSDRVLEMRMQYVTRFQEEAWHDKKLIYVDECGFNTWTSQTFGRKKKGKRIYST
VPSNRGPNMSLALAIGVKGPIHNKLIVGSFKKETFQIFLNELTSKLNGDGYHIINDNASIHGGALSTNNFIEYLPPYSPF
LNPIESVFSKIKLSIRKTIARKNGFSSMSFPSRFDVINEALEIELRKEEYKNLKKYFFHIRRFFPNCCKKIEIFGD
>Mariner1_GG_tp#DNA/TcMar-Mariner 136-1221 [Gallus]
MAAEGQSDKMASDMEVRMKQRCXTEFLHAEKMAPTDIHRRLLNVYGDQTVDVSTVRRWVVRFSSGDSDVKDKPRSGRPCT
AVTPRNEERLDQLIRANRRITTRELCTELNIGFNALETMVATLEYRKVCARWVPRMLTQEQKEHRMQVCQDLLNQYEAEG
DSFLDRIITGDETWCHHYEPESKQQSMEWRHVNSPSKKKFKTQPSAGKVMCTVFWDRKGVILLDFLEPGQTINSDRYIAT
LTKLKARTSRVRPEKKTTFLLQHDNARPHTSLKTVEHIASLGWTVLPHPPYSPDLAPSDFHLFGPMKDGLRGQHFPSNDA
VIAAVKQWVTSAGADFYERGMQALVHRWRKCIANGGDYVEK
>BOTMAR1_tp#DNA/TcMar-Mariner 175-1207 wised with Bgmar1 [Bombus terrestris]
MSNFVPGNYDLRTALIFCYHLKKTAAESHRMLVEAYGEHALGKSQCFEWFKKFRSGNFDARNEERGRPPKKFRDSELQAS
LDEDDAQTQQQLADQLNVTREAVSIRLKAMGXIQKVGKWVPHELNERQQENRKTTCEMLLARYKXKSFLHRIVTGDEKWI
YFENPKRKRSWVAPGEPPTSTTRPNRYGRKTMLCVWWDQKGVIYYELLKPGETVNTERYRQQMIDLNQALREKRPEYQKR
QHKVILLHDNAPSHTAKPVKETIEAFSWEILSHAAYSPDLAPSDYYLFASMGHALSDQHFTSYENVRKCLDDWFASKERQ
FFWRGIHQLPDRWEKCIASDGQYFE
>Mariner-1_DPe_tp#DNA/TcMar-Mariner 177-1225 via tfasty with Mariner-4_BM, 1 frameshift. [Drosophila persimilis]
MEISREGFRWIIFHNFRRGLSQQECVDELSSLYGEKAPSKTTXYRWFAEFNRGRSSVADESREGRPKSVVVPQNIDGVRE
LIVQDRHVTYREIEASLHISSTSIRSILHEHLVVKKVCSRWIPHNLSIAQKKARVDWSKEMLKKFDRGASKDVYKIVTGD
ESWIYAYEPETKQQSTVWVFQDEQNPTKVVRARSTSKQMVACFFGRMGHVATVPLEKRRTVNSEWYTTICLPEVFGEIRK
TNCRARIILHHDNASSHTSRQTGEFLSSQNVELMTHPPYSPDLAPNDFFLFPNIKNKLRGQRFTSAEEAVEEFKNHVLEV
SQEEWKNCYDQWFKRMQKCIDHQGEYFEKQ
>Stow2_OS_tp#DNA/TcMar-Stowaway gi|50933071|ref|XP_476063.1| hypothetical protein [Oryza sativa]
MIRDLNLLPEEEGDGGALPDLNGQADMEEDGRAAVILGDNLLGVDGQEHGGFLDLNLHPFDLNMEAIEEEQMHQAHVVHG
NAHVNEEQEETELDDHDALQFELEALEDDLREYGVYAEAVNVVFDLEDLPDSDDDKEEHANDNVASKSKDLTNIQRRGIY
QLLLQKSKDGKLEKHTTRLVAQEFHVSIRTVQRIWKRAKICHEQGITVNVDSRKHGNSGRKKVEIDLSVIAAIPVHQRST
IRSLAQALGVSKSTLHRWFKEGLIRRHSNSLKPYLKEANKKERLRWCVSMLDPHTLPNNPKFIEMENIIHIDEKWFNASK
KEKTFYLYPGEEEPYFTVHNKNAIDKVMFLSAVAKPRYDDEGNCTFNGKIGIWPFTRKEPAQRRSRNRERGTLVTKPIKV
DRDTIRSFMISKVLPAIRACWPREDARKTIWIQQDNARTHLPIDDAQFGVAVAQTGLDIRLVNQPPNSPDMNCLDLGFFA
SLQSLTHNRISRNMDEIIENVHKEYHDYNPNTLNRVFLTLQGCYIEVMRANEGNKYKIPHMNKERLEALGVLPKALSCDR
GLYERVVESLAN
>Mariner-2_SBi#DNA/TcMar-Stowaway 938-2523 via genewise with Stow2_OS_tp#DNA/TcMar-Stowaway, 1 intron (1859:1941) [Sorghum bicolor]
MISKPQWNLHFFLNNILLLLPHNFFCCCCLTFFFVDMIEDMDDYGVYTDAVDIVFEEEELEDSDVEQHEHTNTNISRKCR
NLTDAQRQQIYEALLERSNRGKLKKNTTKIVADMFQVSRYQVRGVWRRAKQCRAQGRPVDVRSRRKNCGRKRLQIDLSSV
LGVPLHRRRTIRSLAKAIGVKKTTLHKWFKQGLLRRHSSTLKPYLREDNKKDRLRWCISMLDEKTLPNEPKFRDMYNIIH
MDEKWFNTTSDMTYYMLPEEEDPHRTVHNKNRIGKVMFLSAVGRPIYDDAGNCIFDGKLGVWPFVRKEQARRRSRNRGRG
VEVTKPINVDRTTMRSYLISKVLGAIVQRWPRELRGQTIYIQQDNAPSHVPVNDEEFRTAVAHTGLDIRLINQPSNSPDL
NVLDLGFFNSLQSLTYDMISRNLDDLIANVQNEFANYDPDTLNRVFLTLQGCLIEVMKDGGGNRYKIPHIDKDRLQSLGM
LPRVLGCDRKLYEDVLASLGN
>XP_469408_tp#DNA/TcMar-Stowaway gi|50918023|ref|XP_469408.1| putative transposase [Oryza sativa]
MAIDLNILAEEEEDGGALPDLNEAQANLEEEVPGRYVIQVDDLARVACHGNDQVVHSFDLNLGAFDLNLEATEEQEQLHP
DNDNELQHELEALEDDLRDYGVYTDTVNVVFDREELSDSEEEEDANANPNPDANGNEENSSRELTNTQRQRIYELLLAKS
KDGKLEKDTTRAVAQVFNVSIRTVQRIWKRAKLCIAHGVQVNVDSRKCYNCGRKKVVIDLSVVSAIPLRQRSTIRSLAEA
LGVSKSTLHRLFKEGHLRRHSNSLKPYLKEANKKERLQWCVGMLDHRTLPNDPKFIEMENIVHIDEKWFNATKKDRTFYL
HPLEEEPYRPVQNKNAIEKVMFLSTVARPRYDAEGNCTFDGKIGIWPFVRKEPAQRRSRNRERGTLVTKTIKVDRDTMRS
FIISKVLPAIRACWPLEDARRTIFIQQDNARTHVPIDDEQFSVAVAQMGLDIRLVNQPPNSPDMNCLDLGFFASLQSLTA
NRVSKNMEELIENVQKEYNDYDPKTLNRVFVTLQSCCIEVMEANGGNKYKIPHMNKARLEALGILPKALRCDRQLYEKVI
QLLGN
>Hydargos1_EM_tp#DNA/TcMar-Tc1 304-1341 [Entamoeba moshkovskii]
MNSLSTSPLYKKSNSAKYHRIIVMRKEGGKSFEEISKTLGVSKSTISNVLKHFEKEGTLPECKKLGRPQGITGVIVDSII
QATEDDIFCSCKSVAQQVGIAKSTVNKIRHQEGYNYVPQTPRPEMKPRHIEKRIKFSKKALDNILRWLESTIISDESRFS
LHSDARFVWRKRGEKKEETYFDKPKYDVSVMVWGGIGKNFKTKLLRCKPRMKSNDYIEMLEDGGVIKMANEKWGRSKYYF
QQDGATPHTCSITRQFMEKKKVKLVRNWPPNSPDLSPIEHLWAIMERKLREINQNFESADDLFETLCKVWDEIPMETINN
LIDSTEKRFRLCLEHDGKFIGDYLN
>AeTango2_tp#DNA/TcMar-Tc1 381-1388 [Aedes aegypti]
MGGGKISMQIRNLILRDAKRNLSQRKIAEKFGVSRGAVQKIILKHQKFGSVADRTGRGSKRKSSARTDDLIIRQIKKDPR
TTVRAIKERLDLTISERTIRRRMAERELKSYFAKKRPMISKVNKHKRLLFARNHINKPLEFWKHVVWSDESKFELFNKKR
RLRVWRKSDEGLQDRHLQPTMKHGGGNVMVWGCFSWFGVGNLAQINGIMTAEGYIDILCENLEESMLKMGLENNNTFQQD
NDPKHTAKKTRAFFRSTRIKSMEWPPQSPDLNPIENLWAILDNKVDKTGVTNKQAYFAALQKAWDDLDQQHLRNLVESMP
KRLQLVIEAKGGHIEY
>Mariner-1_SM#DNA/TcMar-Stowaway 383-1662 via tfasty with XP_469408_tp, 1 frameshift. [Schmidtea mediterranea]
MERNKRELSNEQRRLIYEDLLSESDNGILKRGAYNSIAAKYHVSIQTVAKIWKRGKEISPSNVASKKRGRVGPKKKNFEL
NGKIRNVPLNKRKTIRSLAGALKMSKTSLHRRIKAGEVRVCTATLKPLLTDANKEERIMFVFRHLQFFEDGSIRFPDMFD
MVHIDEKWFYLTEEQSRYYLETDEVEPHRQVKSKRFITKVMFLAAVARPRFDAHKNEWFDGKIGIWPFIKMEPAKRNSKN
RSRGTFVSTPLVVDKKEYRKMVIEKVLPAIKSKWPGNRIERSKTIFIQQDNARPHISPDDSEFVQHATSDEFDIRLICQP
PNSPDMNILDLGYFRAIQSAYYSTNPSNIDDIIKFVGQSFNDMPRDSLNKVFVSLQNCMIESIKVNGGNNYKQPHMAKDR
QINNDTLPVSLEVKAEILANALSVLNK
>Mariner-6_DF_tp#DNA/TcMar-Mariner 182-1225  [Drosophila ficusphila]
MEKKEFRVLIKYCFLKGKNTVEAKVWLDKEFPGSAPGKSTIIDWYAKFKRGEMSTEDGERSGRPKEAVTDENIKKIHRMI
LNDRKMKLSEIADIVKISKERVHHIIREYLGMRKLCAKWVPRELTIDQKQQRVDDSEQCLEMFKRNKAEFFRRYVTMDET
WLHHYTPESNRQSSEWTASDEPNPKRGKTQQSAGKVMASVFWDAHGIIFIDYLQKGQTINSDYYIALLERLKAEIAKKRP
HLKRKKVLFHQDNAPCHKSGKTMAKIYELGYELLPHPPYSPDLAPSDYFLFADLKRMLAGKKFKTDDEVIAETEAYFEDK
PKEYYKSGIEKLENRYNRCIALEGNYVE
>Mariner-3_DRh_tp#DNA/TcMar-Mariner 183-1166 Mariner-2_DEr_tp very similar (with duplication) [Drosophila rhopaloa]
MEFANAEIRAVLKFSFVKGKSARETFREINGVLGDGTLSLRTAEEWFRRFRAGENDTMDKPAGGRPVTTNTDQIMENIEL
DRHVTSRDIAEEIGVSHQTVLNHLQKAGYKKKLDVWVPHDLTQKNLLDRINACDMLLKRNELDPFLKRMVTGDEKWITYD
NIKRKRSWLKAGESSKTVAKPGLTARKVLLCVWWDWKGIIHYELLPYGQTLNSTIYCEQLDRLKLAIDQKRPELANRKGV
VFHQDNARPHTSLMTRQKLRELGWEILSHPPYSPDIAPSDYHLFLSMANALTGVKLGSKEEGSFYEGGIMKLPSKWEHII
EQNGAYFS
>Sagan-1_PGr#DNA/TcMar-Sagan 390-3472 via genewise with Sagan-2_MLP, 4 introns (958:1612, 2101:2168, 2315:2385, 3646:3707), 6 frameshifts, 1 stopcodon (poor sequence) [Puccinia graminis]
MAVSNAEKASSCSTHSGKSSSCAQPIPISNDDDNEINSQRIIPIPDSDKDEIEVANIDNCGAFESNKAQPSLCGSDIGST
HDEIPKHRPHIEDDGDVFEIYEKELEEQNRANDLVQYVEAALHDNTSDEEDLEIEDEPPNKMWSSLFGTALPIENKQNTI
ERRNKSKHLETTITSCKTISSARNPIENADQQSIQISNLQLSMWLDTTLQTNNDHLPSEDLLDSDAVQAVLRPDEQLSFS
SKSPEAKNRSRKLEPNGKSSTQQSPRNCHSQRKGKKDKKFKFPQSMIENLHEFNNLRLKYTLMEPSSPPNCFPCNCPVFN
RRHPPKDEPQHNRSGIYLARIISKQARHVLNYKELSESNGEPTNHKXPLDDTELREALFAWAASQIPGEVTPITFQQHVI
NDFSQVRIDRTSAATATRWMFKLGFRPQEHQKCLYFDGHERPDVVESRKKYIEDYECIxKRSRIYGGEISTIFRVDPEVX
GDKKETVFVFHDESTSMQRRGLNRLGFFLEQRDQNRSKNLxRLIHISDFILETTGRLSYPSXIPTSQHDEAPSLISRCCY
RHLPWSNGDKWWDMEQLCDQVSKKAIPIFEALHPNSQALFVFDCSSAHGAYSxSALRVQNMNLNPGEKQSRLRDSVIPSD
DPSFPHLRGQPQTFSYDPSHPIQNELATQRNPSILEERGFGSTTAPKHGRWQTALKLRCDTCAHQTCEKMRXTISKLIRQ
AEDNGYFLTQEQCVPRSWPPTPQTRMQRSIKMNxQPSTCCWSKILSLNDFVNERPLLQTIIEDAGHVCLFLPKFHCELNP
IELFWSTSRSLSKAVSHPKSFAAxKDLFEKVRQSCPLVTIRKYFRRIDRQXSAINKDTTVLNPKSDEEVQITSCIPRRAA
MGIDVLT
>Mariner-1_SBi#DNA/TcMar-Stowaway 874-2199 via genewise with Stow2_OS_tp#DNA/TcMar-Stowaway, 1 intron (1942:2031) [Sorghum bicolor]
MSEEVRKQVYQTLLLRSKNGKLGKSDTKVVAAQFGVHLRQVQRLWKQGKTALANNIPVDVGSRKKGTVGRKPSMSTADLE
VLRSIPYKERMTIEDVCAKLNMSKWAIQRYLKKGFLRRHSSSIKPYLTQANKKARLKWCVEMxKRDLLADPRFKDLYDFV
FIDEKWFYLYQKSEKYYLLPDEDEPHRTCKNKNYIPRLMFLCVVARPRFRDGNCTFDGRIGCFPLVRYEPAMRGNGRTGR
VRGDLVMKPITSITRDVIRDFMINKVLPAIRAKWPREDVGRPIFIQQDNAPTHLKLDDPDFCEAAKQGGFDIRLICQPPN
SPDFNILDLGFFRAIQAIQYKKNAKSIEALVPAVQQAFMEYSAHKTNRMFVTLQGVYIEAMKVKGCNKFKIPHMSKRTLE
REDRLPDSLPCE
>Sagan-3_TMe#DNA/TcMar-Sagan 279-2633 via genscan, 2 introns (497:891, 1162:1233) [Tuber melanosporum]
MGKGGIRDQPCKITIVTTTVLYTQSHITIQMPPPNKKRKHMQRIAPQGGRPKKACNIPHLGIKPTSTCEAPAEESLIENS
EAEESRLSLDNEEEEVATSGTCNSHGTKRLSRSTLWRRAYKEKEQERQREMGRENIEDSWEDIERQVEEKWPRVSKDIRV
TVLKKDLERYFQVLQFMNWQLKYPDLLRKKAAVNTAVGWGRGKHTAENIIRWEKSWIRTRTITMSQRGKHAKSQSMLNDE
GTLIAVREYLDSADEAISGQGLAKAVTNYWAQWTSQHDAEIRVACVYQALIEKHTWGKMSITASTAIKWLKKLGFEWKEV
RKGVYIDGHEKPEVVFYRQHHFLPQWKKLEKRMPKWLPSGELDNTPLPANEQLLIPCAHDECTFHSNDGVHHRWIHKDKH
LIRKKSRGQGLMVSDFILPCNRLEIPPTIPLPPALKEREMEPIPGLKINPRQATEYIKVGKGSWWNGENLVNHVLNVAIP
IFEATFPNAQALFLFDHATSHTADASDALRVANINMDPGGKQPQLRDGWFYQPNGATLYVQKMSFALDDLTVPERWRGMP
KGCKRILQEHGLWPEGGLRLDCKSKKDKKDRNHQSNSCCARQLLSVQPDFMEQKSRLQEEIEKRGHLCLFFPKFHCELNW
IEYRWGRAKWFTRKNCQYNWPSLIKTVPKALQEVPPLLLLKYWWKSNRILDAYYTGLRYGTDQFTKTVYKSHRRVPFTQD
PS
>Sola2-3_SP#DNA/Sola 712-1866 (Fragment) Via tfasty with Sola2-1_SP, 2 stopcodons. [Strongylocentrotus purpuratus]
MRSINSILKVILKVKEHKADENGRMMKAEENGTTEELLDHIxKILPHFLEHCFFKREQAASCKAQKVKAMSEDxDNEVAL
LQVDFSENYTCVHQDEIQSAHWRQRQVSLFTAAIWNKGLMQSHVVASDNLTHSKETIMAYMDTLPDPLPHGVKLVYVWSD
GPASQFKNRFIAAAIDALQKKHNVQVQWNFFCTSHGKGPVDGIGGSVKRHMWKKVSTRKSIITDTASFTCACADMSGVAV
RELTDDEIQERNQMLDLKSVFDSASPINGISRMHFMKHVNNEVVCYLLSTDNQSSNDEISTNGDAAIHVGDWYAVDYDGI
LYPGEVVGVGAKDDYRVYVMKPAGQNWKWPTTRNMIYYPKKNMVLKIEKPEIANNRSHYKFTAKF
>Sola1-11_AP#DNA/Sola 1153-3145 via tfasty with Sola1-5_AP, 2 frameshifts (apparent 120 bp deletion in consensus at pos. 2652). [Acyrthosiphon pisum]
MYHPLDRPILTISDLESMDFRYLDSFGDTVEIQNDGVSNEGNNLFHTALMVPVSGTGINTHEIDQTELDYNSIINNSNLQ
MNNMTVNEASIISESHDAPYEPDEIELNESFSDDNVVGRSGRKKPKKGTTRKVLKNYLINGTGKSVKPNPCAKLYQNKCS
KKFDESQREDIFKFFWELDHERRRDYLLSCMKRVQIKRKRSIGESRRSVTNEYFLKHNSIEVQVCQQFLLKTLDVPQKLL
RYTHLNKSPVNTAKKDRRGYNTPINKTSPEQLQIVDKFIRCLPAVSSHYCRNKSNKKYLPTEFRNIANLYLIYKDYCTKK
NEFPISSLVFRRFFKTKYSIGFHLPKKDKCKICEKKNENVNNNEEEIQKYNCHINLKEKAKAMFLSDQKKTESNKSFLCI
SFDLEKVLNTPYGNNMNFYYSRKYSQYNLTVYESVTKRVVCYLWGEGDANRGCYEIATCMHDYLMDIDKKKSIKTIALYC
DSCCGQNKNHVIIGMLNKFINKRKWPTLIGNSRKNPGPLEVKVMKFNDFFDWKTFTSSVMESTLMTDNKKVVKITKMKSV
QFTKGEGIQVFFDYDEQFENIMIQHSPRIRKSKKANTEVLLEPQQLYSCPRKITSQKYFDLIKLCKQEIIPTRFHDEYKN
SSHDKNILDMLTETDEEDDVLEEKD
>Sola3-2_BF#DNA/Sola 1857-6631 Via genewise with Sola3-1_BF, 6 introns (2263:2376, 2488:2699, 2762:3165, 4034:4401, 4530:4717, 5739:5816) [Branchiostoma floridae]
MSCSFAEFASGSCGANPNAPAEGEKIIPLNNCSKDISNHLSLFQIPNTVQTEHDLILARVGLFAHPDYVSDMTICPKHRG
AFGLSWRCGTQKCKMPVQLSNHRRWGARPKGDRGIGFFQSKKVYELAGELVPVGSVICRNCRTAIGGEEDLKGEAIPQQS
EIGEHEPVPSTSGEQGQVPGTSGLEESLQQMTLEETHGSLSSSTSAGGAERSLYTVESHTSSGDAGSTAPEPKALLGQLL
YASGSKVEKVKVLSVPWAEASQRTQRFHLQQASDAVSSVLQVLAPDDSYSLWKSLRDSRLADVALGVGANVIEMEILTAL
VECYNCANQSFTRRQILSIMADKYSFSELEKLMPGLTRYQVTAAKKHMYQHGRGAPLPPSPDVRMRVDPGKLDHFISFIT
SAHVVQDLPFGEKTLKLSSGETLKVPNTIRAMIPERIVSQYQQYCAETHVVPMGKRTLLRVLSACSASVRTSLQGLDYFT
AEGGRAFEDIEGVLEKMAEQHGQEWAKTQATILRSAKRYLKGDYKVHVSQETRVAEHCRKYALSDKDGHFRATCSHEHTD
TCEACGNLHQIFDCLEESFTTFNFTSPEEQDEVRFIIDQARQDILAWQSHQLRSINQDAVWYSLLDSLDESSVLLVQDWA
MKFLPRKFRESQTDWFGKRGISWHLTVAYRCVNAVIEAQTFVHLFQTCTQDSNTVVSVMKHTVEELKKDYPSLTSLYVRS
DNAGCYHNVLTLQASKSISETTGVTVKRIDFCEPQGGKGSCDRQAATIKSHIKAWINEGHNVETADEFKAAVESHGGVPG
VKVYRCEVNVDATVTSTKFEGITKLNNFEFTDAGLRVWRAFDIGEGKLIPWSKLPAVEPSTLLIIKSDSEEETVSHETPA
QTQVNIFPCPEEGCVKVYQTCRGLDAHVAVGRHNRRLERETLLDKAKLMYAAKLEKGPSEVPRLETASEGKRTTECPVEG
WALRGPRKRVRFTAKQTAYLDRTFHLGERTGKKSDPQTVAKAMRHARDLQGQRLFGVNDFLTTQQVSSYFSRLAGKRQKP
TEDDEVEQLDPAVLESINSKVQNEVMNNVHVRHPVLYDTYNLCDLAIRGDLYELGMPFLKQICEHFDIDVSSITDRRRKS
AFVAKLQEYLSSCPCSK
>ISC1395_SS_tp#DNA/TcMar gi|15898509|ref|NP_343114.1| Transposase in ISC1395 [Sulfolobus solfataricus P2]
MDVLRTLKRRIRKLIEKKPKNLNETKARGILLYLKGMNTRKIAKILQVHLSTVYRWINQFEKEGEKCLFYKERKGRNKKI
DEKEIKVEELQGKTIWEAKAYIEEKFHVKLSHVTAWRIARKRLKIPYIKPYNKKRPFNADNILRGRLKGVIKKGVKVFFM
DESGIHHDPSRRLGLYNVSVDYPSKKLNVLASIPLFDGVPCFMSTYSNVNFKIFAEFLRLFRNSGPIVLILDNAKFHKNA
YVFSVASQLGITLLFLPPYSPDLNPIELVWRDLVRGLILIIILNTLLIRWRRSSIICF
>Sola3-2_HM#DNA/Sola 1205-4611 Via genewise with Sola3-4_HM and Sola3-2_BF, 2 introns (1364:1454, 4214:4340) [Hydra magnipapillata]
MSESNNIVSLYEKCVYFDKGQTSCGPFKRWKQHGIFQINELTADISNHLQVLKLPQTNQYNEKTLIESRLQTYLSCDDWL
CAYHRFSFGIGWKPPNRCQYPSHIFQVGKKAPKIRSIPLNTLATYNKSNSSLPIGAVFCFKHLKTISIDNIIDMIEPIPT
VKSSSYVDKVYVPDLAIISDKTIEESKLKASSLCEALGASPLSFHITQKRIEDLTQGTKQKVKKKFEKCKVQLEKIFAEA
IAPGQSEALITQVLNSEDENVATEMVPEDLIVQVKMFQESDSLGKILLLSVVNHNKYTKETLMKVFDCKKHQIEKGRKLQ
KENIGLSIPKKGKVKICRMPQEKIEHFLEFLFSRGLLQDVAYGINKIKFDNGEKQKVANAILMMKFSHTITFYKEICLET
NYVPMSDSSLWRILCGIKPSQRKSLAGLDDVTAAGMNGFQTLIAISEKWKYKNVTKFLEKGKRYLKSNYPSKCSENSTLH
SHSTSFALSDIDPDLNQSNITADDEQCIDCTDLISVINQVRELVIQSEDEDLLYDLNVATEDVEAYMKHQIRDAQQKMAK
IMAFEQLDEETGFWLKDFCQKILPAKFREGQKEYFGKKGMTLHVDVFFFYENGRMKKKVYFTAVYRCEQSLVDVLCLADV
VLAKVKNDFPYLKNLYAKSDNASSYHGNFYLEALYNVCKAKQFFLKRYDYNEPSRGKDQCDRESAGAKCVIRSFVDAGNN
LLTAEDLYEALHNGKGIQNADVAVVIINSKASILSGSNLIPNISSYHSFQFFPDHMIMWRYFRIGKGKKWNYTNVTFHTS
VEIVKPFSSTCKIYTAPTISKKPRVDRRVNTLKFCTQFGCTDSFFDNESLEVHLLSENHNFQSVKKSMVDRAKLSYINKM
KISNLNSYDYLPSSQSVIKGIENFTDITGWALPKRKVFRYSSKQKTLLMQMFMSGEEQGKKMSPEQVHQQLRTKLKPSEY
VTTQQIRSLFSRRWSKQKREGKLVTIFCEDANLTDDMIDLTDDARHTSQNKDDDLNNDIQLIAKELAADFQIGDWVAIEY
NMQWYPAIIQSVRRYNIKIFNF
>Pigibakku_tp#DNA/PiggyBac 156-1896 wised with PiggyBac1_AG, extended with ORFs [Takifugu]
MLQHCLGTAGAETQKLCQCGFLSQPIKMAKRXSAQRALELILEDREVFDDDVEGEDSEEEVSEFEDHISENSESDSDSEE
DDEIEHQPVPKQRRATGPGRQQPSPGPEQASQHGGEIWMSKNSEIEWSSRPRKGPPHKAANVIRMQPGPDMAVTHTRDIK
SFELFIPDSIQEIILDCTNLEGRRVFGERWKELDQTQLHAYFGVLILAGVFRSKGESAESLWDAETGREIFRATMSLENF
HIISRIIALTTEMTDQXRWQRDKLGVIRTVWDKWVRRLPLLYNPGPNVTIDEQLMPFRGRCPFLQYLPSKPAKNGIKIWA
ACDATSSYAWNLQVYTGKPDGGAPEKNQGMRVVLDMSQGLSGHNITCDXFFTSHKLGQELLKRKLTIVGTIRKNRSELPP
QLLTSKNRPVKSSQFAYTADTSLVSYVPKKGKNVVLMSTLHRDGRMCDQEHHKPEIIMDYNATKGGVDNMDKLVTAYSCK
RRTLRWPLVIFFDMLDISAYNAFVIWMALNPEWKRVKLQKRRLFLEDLGKALVRPQIERRKHIPRTPASAAMVRRIQKEN
AGALSTQPTEPQSAEPEVNV
>PiggyBac1_AG_tp#DNA/PiggyBac 1165-2823 [Anopheles genus]
MLKKYNYQSIILSKLIVMTITQNLSNFQAQHITHDGTIWSSQPTIRRKILAHNILRSSQSGPTRKTEGLSIIKTFKLLMS
DEMIDIIVRETNRKAQQIYEREQVTNSAKSASMHTWKTLTTSEFEAYLGILLLAGVMRSNYVHSTELWKTSSHPIFRATM
SLQRFRSINRFIRFDDGRTREVRKEMDKSAAISDIFAMLNRNLQACYVAGSHVTVDEQLYPYRGGTGFTQYIPSKPAKYG
IKVWWVCDAVTSYPIKGQIYTGLAPSGQRERHQGERVVKDLCRIFRGSGRSVICDIFFTSYNLASSLMSDFKLALLGTVN
KRRTFVPPMFANPHGREIQSTLYGFSENISICSYIPKKNKSVVMLSTMHYDKDVQGPKEKPAMIIDYNKFKGGVDNMDKC
LSEYSTKRKTNRWPLAFFFNILDIAAFAAFKIYKENNLQNCQSTDYRRMFLQQLSEQLTMPEIQRRSENVQIMRHFGPRS
GVESMLGGPLIALSKKNTTNDVEERDVSGRIKHKGNCYLCVKKRSTRKSCSTCKKPICTLHSVIKTSCKSCD
>Leapfrog1_EI_tp#DNA/PiggyBac 107-1846 [Entamoeba invadens]
MEKEEMEESERCDSDNVLSDENYEENYQEEVVDKHENCVNPNCQLCWKNVKFTEDDVDSINFIHDKSGNMKSTTMINTEL
DCFMSLFNDECFELITENTNLYANQKKTRKWYPTNVNEMKAFISVAIKQGVNNDNKKPIQELYSKEALPFYLAIFPLYRL
KSLLYNIHFDNKLNRYQRQCTSFRKEEAIADLYDKLNINFQNVYSPGKNVVIDEMMCPFHGKCPFKVYMPAKPERNGLKT
YAVVDCESLYVSKIKLYCGGEFNPKNNKFINTISYTQRKTTVTHVKKQNLLELNSISKKPRKEKSKGNPIKNTVIFLMNH
LFGQKHVLCCDNFFGTIDLIKELVDKQCDYIGTVRQIRFQVCKKFTEENKLKTILYKHINLGWSMLGYKETETKQRVCII
STENSKTKLDEEDGTPETVVKYNKLKGGVDMVDKICSSYSSRRTSRRWSVTYFYFLLDICVNNAFVMWVKSTGNNNRRTF
IHNLSFQLSSFFISNILIQPRLPQMERIKAMKNMGFDISTEHRQNKYIKTIGGKKSGYCHDCKQRKTTACCDICSATLFT
WSCGDCNRVLCGECFKKIA
>PiggyBac2_Api#DNA/PiggyBac 187890775 336-2119 via tfasty with PiggyBac-3_SM, 1 frameshift. [Acyrthosiphon pisum]
MFVIILDVQLYSITVEQKHISCVRGLIIETTMSSKSHNTLNVDDIERELENSDTEFENYDSDSDPEYLMSDGGSDSNDEE
VVSHGDLAIDYLEEDWSNTVLNLGGVDFTGKSAGLLHEIVIEDSTNILKPIDVFFSIIDNDILLLMCNETNQYAHQRLNS
GPVRRSSRMSRWKDVDIDEMKKFLGVLMFSGVVVFPTYESYWKKDSLYYHELFHKIGMSYNRFIIILKCWHFVDNNIARD
NTDRLYKIKPLMDMVFQNTQNLFTPGDTLVLDESMIAFRGRLLFRQYNPSKSHKYGIKMYKLCTPEGFTWASSIYCGTGP
NLGTLDKPGTVVVNLADSLLDEGCLIITNNFYTSVPLAEYLYGRKTDLCGTLRKDRKWLPVDVKEKKLKKGQFIARQKEF
ITILKWHDKRDVLMLSTCHGDQFQNTGKTDRKGNTITKPKMILDYNNTKQGIDVSDQLSSYYNPQRKSLVWYKKVGMELL
FGITVVNSMIIYQQTSKQETLLSFTESLSRSILCTEVTDKSESVNIQKNISMHFLEQFDRQNGKIQRKRCHGCYSSLRED
GQLSAEEAGKKAKKVNTNCKVCGHTYCLICYNKIH
>PiggyBac-8_SM#DNA/PiggyBac 477-2219 [Schmidtea]
MSKKAKLSTYLENATNIPLECSDVESESYDSDGDNSSAIIESGDEEIPDEDNIDQSSDSDREKILNKRTRRCMRFPSSSE
DECGSNIPNQQTEIASDGTIWTRIEEGGSAGRSPHHSAFKDEHGPTAHAKRNIMNGNLSSAFLLLIDNHILEHIRICTES
EASRVLGKNWTITQEKLKAFLAILYARGAYEANNLRLQYLWNNKWGPSFFSNTMSRRDFTEIIRYIRFDKKNQRSQRLQT
DKFALVSAVWDKFIENSKNCFKPGAYITVDEQLFPTKARCRFTQYMPNKPQKFGIKFWLASDVETKYVVNGFPYLGKDET
RNASTPLSEFVVIKLLEPYTMKGRTVTTDNFFTSIPLALKLRSKNTSLLGTIRANKRELPKICKLKKDSMARFSTMLYQS
NGCTLTVYKSKPNKKVLLLSTKHKHIKIDKAAKKLPETVSFYNNTKFGVDVTDQMARKYTVKSGSRRWPLQVFFNILDLA
AINSWVLYKNTTGENISRKDFLFQLAEELASEYQTSRQKPHETNIPTINATVPVRKWCQIGYCNNNKTTNICNKCKKSLC
GKCTRSKIYTCRNCEQQTVNN
>piggyBac-1_DAn_tp#DNA/PiggyBac 422-2386  [Drosophila ananassae]
MYICNIYLFVIIIMLCFMCFYIQLFGIYCLCRLCYMFIYGTKVMLCFKWYILLYYIGIMSEKGLTPSQIESFFNSVDSED
DLDFSADDESDYYPNKEDFETSDDEVLENQVELPTDLNVPSKDVNDVATSSKKDLRRNLLWRQRSLILNENQLQLLTSTA
LPPELMELSQPIQFFSYLFPKKVFENISNETNLYIHQKEPNANITFTPLDIQQFVGIVLYMSISRLPKCALYWSASIGIP
TIQNIMSQKTFETIRRHIHFNNNDNNLPLTDSRHDRLFKIRPLIQEINNNFGKVPKEQFLCVDEQICSTKARSHMKRYNP
NKPHKWGYKIYVLSGNSGFCYKFEIDSGNENVVLLNEPDLGAASNCVVRLAREVPRHQNFRLYFDNYFNSLPLLKYLAES
GILALGTIRKNRIPNFKSMENIHLKKNPRGTSVEYVADFGGVDISCTSWVDNKIVSLASNYAGIVPTDTARRFNKAKKEY
IQIDRPFAVAQYNSYMGGVDLIDSIIGRYKILLRSKRWQVRIFYHLLDLTISNAWLLYKRVMKANGYPGKVLSSSDFRLD
IAEVLTKVNTKSKLGKRSSVIENELQLKKQRGPTQHVPNQMVRQDQVGHWPIWADKRIRCKFPNCAGYSQVMCNKCGVAL
CFNKRNNCFTNFHLN
>39969559_MG#DNA/TcMar-Ant1 gi|39969559|ref|XP_366170.1| hypothetical protein MG10389.4 [Magnaporthe grisea 70-15]
MPERKRLSNALFQVNDLRSKIGISAMEDLQGLLKNDCRVAYQPSLQPIDGRCPRKECNAEVDLRFYGFMKQSSWKKHIHQ
CFFSYIRQSGSQTELRCPDPGCSTQYNSEELWYHLQDAHSYPSAQAASRSKTEKDPFIGDYEAPNSRQSQPKRRRIRKIS
TDLIQVYPLETLSETICATPSTLSILSTNSSCGSFDASTPASPTEDDSHYAANQERQLETSVLAALGESTGIYEDCELAN
TGFINNSIASMEKIGSLTSNKTTEHLDSSANSKICEPVKIHGFTVELVDPGLLRVTTNHNLPADKYPSVTRERPDHHQAE
PGLLPLENCEDEAITDAEISRNIVPCSTRTIRNARSNILRHGSLDPPPKVMGRPREVTENMWLALQNRLERNPCMSQQAM
ADFIYEQYQFKVSRFTIGRTLKRAGWTKKVTQNIAKERNQNLRDDYIERRSHYKVSQMIFIDESGSDRGLGILEQGYAPK
GVTPVQRKRFHRGKRVQVLPAYTIDGVIYCEVYEENTDVDVFEGVLERLLPHCGRYPEPRSVIFMDNASFHFVSQRLRDF
FARAGVIIEYQVPYSPDLNPIEYLFGSVKNRNVAYPLFGTPPVRHPKITTLLFLSSNFYYKYLDESVTFGFTFF
>NHT1_tp#DNA/TcMar-Fot1 Contains 2 introns (protein is:  gi|27261457|gb|AAN86008.1| putative transposase) [Nectria haematococca]
MPISRLRWEYTEDDMAEAILDITDNGFSPSQAAKRRGVPRRTLIDRLNGRGAVKEQIHPRRRLSKDQEDRLAFWILRQES
LGYAPSHDQIRACVMGLLRRQGEHPELGRNWVARFINRRTDLKTKMGRRQEAKRFDAFTPKAVHWYFDIREGQYGWIKPE
NTVNVDEGGIMTGFGLDGLVVGSADPKRKAFLKGPQTRNWTSFIEAITADGRALIPGIIFKGKELQKQWFLEEFKTIADW
YYITSPNGWTDDHISVEWLERVYLPQTTPADDSDARLIILDGHGSHATDKWMATCFLNNVYCCYLPAHCSHGLQPLDNRV
FNASKAAYRRELEKFASLTDSTPMDKVNFIRAYAKARRVGMTKKNILSGWRVTGNWPISRAKALRHPEIQQDRPNGSPRA
TPEPRPYFDSDDTPQTSRQIRDLGLNKTPKTRRRYNVIAKGFKAQQQTVAAHTTRIASLEEELARLKRGKKRKAVPNPNK
RFMTLGETLAAREAIAEEETQIMPVVVECGSSSEPESESEAGSVIEVREETIPHQPTTRSGRVIKRPRIQ
>Molly_SN_tp#DNA/TcMar-Fot1 81-1731 also equals gi|21262157|emb|CAD32687.1| putative transposase [Phaeosphaeria nodorum]
MPQQQHQIDPSSERHIQTALQALKQDATLSLRRAAAIYNVSRATLSDRRAGRPSQADCWPKTKNLTKTEEDVVVKHILEL
VTRGFPPRLAAVADMANSLRAERGLGQVGSNWPSTFVKRRPELQTKFNRKYDYKRALCEDPEVIRDWFRLVENMKAKHGI
LDGDMYNFDESGFMMGQISTGAVVTASERRGRPKTVQQGNREWTTVIQGVNATGWAIPPFIIFKGRHHLSAWYKEEDLPH
NWVIAVSKNGWTTNELGLQWLKHFDEHTKRRVTGAYRLLIIDGHESHDSLEFQQYCKDNKIITLCMPPHSSHLLQPLDVG
CFASLKKAYRRQAEELMRNRITHITKLEFLPCFKRAFDAAITPSNIQGGFRGAGLVPFDPERVILALDVRIRTPPLPTVE
DCPWQSQTPSNTLELGSQSTLVKARIQRHIDSSPTSMVEAFEKVSKGAAIIAHKLVLAQKEIAELRAANKAATRRKSHKR
KRVQEEGTLTVEDGLRRTTLKEFGARSDGKKAKKQVRAGAGEPSQRRCGRCNETGHNARTCKKTVEVDSE
>54303161_PP#DNA/TcMar-IS630 gi|54303161|ref|YP_133154.1| Hypothetical transposase, IS630 family [Photobacterium profundum SS9]
MIKITLTEKEKSSLESRHKKCRDKRECDRIKAVLLCDEGWSSAMIAQALRKHEATIVRQLNDFIQKEKLAPESGGSDGYL
NADETQQLTQHLCDVTYLHTHQITAYIKETFSVEYSISGLNKWLHQHGFSYKKPKGVPHKFDAGKQAEFIEDYEELKASL
NDDEPLLFMDAVHPTQATKITAGWVKKGVDKPIETTGSRTRLNIVGAIRLGHLSEAIVDKYKTVNGESIIAFLNRTRDFY
RASGTIHLVLDGAGYHRSFQVVEEAKKLNIELHYLPPYSPNLNPIERLWKVMNKHARNSRYFATAKEFRERIDRFFTDTL
PEIADSLSSTINDNFQKLESAKSAF
>49074584_UM#DNA/TcMar-ISRm11 gi|49074584|ref|XP_401416.1| hypothetical protein UM03801.1 [Ustilago maydis 521]
MPPKRKRNSVPDSIREKIVDLVLHGGHTKAEVAKRYDYPYTTVDSIVKKFEITGETAAQRKKGGAHRGSQLGEQELGLML
HYIAEHPNATINEVKNHIRNERGLSLSVSMVQRCLRDRLHLTLKRINVEHDRHNSAEAITNRQQWTQALRARGELLDEAV
FLDAANFHLQQTRSLGRARAGDGATQSEAPYKAQNLSVLVAVDRHGIQARLVKTGVWNAQSFLTFLQEEVFPVLQGQRRT
ILLDNVRFHHITEVVSAIQNAGHQPLFLPPYTPWFNVAERVFGKIKPYVSRRNLRETDDIRQVIDQQLSTITPESCVGWI
HECHCWMMVAEAGHPLGPEHDAATAVLRHGLVAEP
>5002202_DR#DNA/TcMar-IS885  gi|52222709|ref|NP_284933.2| putative transposase [Deinococcus radiodurans R1]
MPQVWQPNRLTRQQLEERRLAAQPLLNNPEWTTASIAEHFGVKPSTVRVWRVRLSERGSLEATLSSGRPAWLNDAQVAEI
IELLQQGPDPERFPDGRWTTERVRDVIGLKFDVWYDHDWIGKLLRRWGFSWQKAEKHAIEQNPEKIDAWLEEELPALEKK
GRSWRNDRLGRXKVGFSMKPILGSTWAQTGQTPVIFAKTEWRKLSTIGGITSAGQFFQQTHEGSIKADDVVAYLAHLLRH
IAGSVTVVFDNARIHRAKVVQEFLKVNPRLSIVYLPPYTPEFNPIEQVWAYVKRHLLANCCPASVQELKVFLRSAWRKVR
YRRLPAKLLGITEEFLT
>Mariner-35_HM_tp#DNA/TcMar-Fot1 786-2959 via genwise with Mariner-3_HM, 2 introns.  [Hydra magnipapillata]
MARGLKAVDKGMSKRKAAITFGFKRSTFIDRSNGKHTKKNGKPTKLSENIEGILVKILIFMSDIGFSLTRLEILCVVNNY
LVNSNQMCFNGGEVTLAWYYSFIRRHCEELSLRTSNNMPSNRAMSTQPGTIDRWFAQVSDMYNIHGFATKPFHIFNCDES
GLQCDQGKFKVVCRKGSKGPKKLCSSNEKASVTILVCCDAFGTFLPVHVLFQGQRLMSKWLLTQDGPNSATYGVTQSGWM
EGPAFAGWFEKTFVPHCRKLEGSKVLFLDGHASHVTLELIHLAKEENIIIFKLPAHTSHVLQPLDVGVFRTVKSKWRGIL
NKHFIQNGFKDLTKPRYPGLLKQLIDQSFLSDNVRSGFKATGIFPLCREKMTNEKLAIGSIFAQSTQALPTLPIPVTTIP
EIPSSIQKHRSSSTQTSSSSLKQIPPLTCCTTACEHLKTSILNALHVGLPKASVSESKLNVSNNNMRLMKSYIMTSEEAL
IELTNKQTMAQNKKNEIQARKVLREKTKQEANSIKTQKRLAKEAGLFNKPTIKKRKRQLVGVIETPIMSESEATSIYQHC
KSDGSLNSKKCQACDIFFGDETAAQQ
>FotYL_tp#DNA/TcMar-Fot1 402-2681 [Yarrowia lipolytica]
MLNNQERRKRKQYPPESLYKACMEVIRTNSTHKAAGKKWNVPDSTVSWRIRLLKQHGSLQPDWIEKMRISYKELALKMNW
AHSNNKKLSEAHERGLLDHVKFQHSIARPVKLKDISKIANYLLKANGNTETVGKNWASNFVTRHNLLEVKRPVSLEQARI
DGTTHDKLEEFITTITSQTLEEVLPENRWNMDETGFQQGEGRGGQVVGLRGEPAIQSVTGRSATTTVIETVSATGKSTRA
LVIFKGKTVQGQWFPKGSRAEDYKDMVFEFSDSGFTNNNTAWKWLTQVFIPDTMPKDKYGNDAPHIRRILYMDGHHSHTQ
KRFLLKCIEHNITTVLLPPHTSHITQPLDVGVFSSMKHWYKDLAGNEGKVGNLTDAGPHVFLTVINEVREKALTESNIAS
GWRASGLWPLDPEKIRSNPRLIRENGNKEPLGAVRQDYTSQDTVRAIFPINTPTPAVPDMPLQPSLEELENSIHDDTHDE
TYKCTSESESDGSGSSDSSDSDVSASDIIVNDGAMDASDYEFLAAVNEELLERQNNANQVDADETLGSQQAFHNFSSSHW
HHDDCIEKIFCKETYPPMENPPTGGNALLTWAHSTHPAMRDFLIHGLKPFVEMIDRLVGDLYHMQEDATMRQHEIDIVRS
KTKRIRVNRSAPDQVISSQDVFAAIGAREDRGNARRERSARSTGEEPTQEEPTQEEPTQEDSTRQQSTRQQSTRQRSTRR
AGPFSKVPPSLFADSPTSDTSSGPQDDNCPSSDSLMLSD
>Ant1_ApNi_tp#DNA/TcMar-Ant1 gi|1911486|gb|AAB50684.1| putative Tc1-mariner class transposase/IS630-Tc1 homolog transposon Ant1 [Aspergillus niger]
MAPNLAPSTIEFIRDMILSNELTPSQIADAAGCNPSAVTRHINNLNIFGSVKAPPIRRGRPRRLTPEMVKALCDHLLEKP
YLYLDEMAIFLWDEFQVQVTTCSISRSLKREGWSKKTAKQKAIERNADLRDTYVHYISDFSSRHLLFVDESGCDRRIGFR
RTGWSPLGLAPIQVAKFHRDQRYQILPAYSQDGIFFSRIFQGSTDASVFEDFIEELLQHCGRWPEPKSVIVMDNASFHHS
EKIEELCSQAGVKIVYLPPYSPDLNPIEEFFSELKAFIRRHWQTYEDNPEQGFASFLDWCVNTVGTRKSSAEGHFRNAGL
TLDEV
>Mariner2_AO_tp#DNA/TcMar-Fot1 95-1768  [Aspergillus oryzae]
MPPKAARKLKDSIEQEGRILLAISAIKKQEIRTIAEAARIYNIPRTTLRRRLNGHTFRAETRANGHKLTQNEENSLVHWI
LSLDQRGAPPRPAHVREMANILLLKRGFSDTPTTVGENWVYTFIKRREELKTQFSRRYNYQRAKYEDPKLLHKWFERVQI
TIMQYSIQPDDIYNFDETGFAMGLISTTKVVTRAELAGRPFLLQPGNREWVTSIKYISSRGPLPPCLIFKGKVHIEGWYE
MGLPSDWRIETSANGWTTDEIGLRWLQQLFIPFTAGRTVGRYRLLILDGHGSHLTPQFDDICSQNNIIPLCIPAHSSHLL
QPLDIGCFGPLKRAYGQLVENKMRLDFNHINKLDFLEAFPQARAQIYTTSNICSGFSATGLIPFNPKRVLSQLNIQLEAT
PPGSRPSSRSTNSVPKTPHNLKQLQKQETTLKKLLRARTKSPDSPTKIVIKQLFKGYERALNKATITKQEARELRAAHER
ILKKKKRSTRQLPIESGASVQEAQELIQGRNSTIEPITTASVDIGAPVESQRIRAPPRCSGCNILEHKITQYPNRQTI
>Mariner-13_HM#DNA/TcMar-Fot1 738-2649 via tfasty with FLIPPER_tp, 1 frameshift.  [Hydra magnipapillata]
MADNKNKIYNKKQCHPTRGKYMKYKEEVLLEAINSVISSPKMSVRAAAKFFKVPRATLQSRINGKVEIGAKAGRKSLMPL
DLEKKLPILQTTELGWALVLEKNNSWYMLASLPKKYGYSFKNGKPSNKWWRLLNNRHNKKVTLRQPESTASVRHQCMNLI
KVANYFTALKEVIKDCQPEVIWNMDETGLQLDFKAHKIVAAKGTKYLHMRTSGNREMITLIVCVNAAGRALPPHVIPKGK
TVKSLQSFQVLDAPEGTNWSPSESGWTKQGIAKLWFELTFLKNIGPQRPQVLILDGHDSHNFVELIDMAIQNRIEIVELP
AHTSNWLQPCDRTVFKPFKVSYNKAAQDMMSNHPGVIINKANFTGLLTKAWNKSMTKANIESGFKSCGIFPYNPSIIPAE
AYLPNYVYSEDRLMTNLFDQIKTVDNTTTVKQIKQTTDSTKVLLPDIELEQHLITNPRFAVANDHDYLAEPITVVEHRSD
DLVELNMKTIELKAASNKATSKFQDSFRIMSYSEIEQPIDQHEVDFTVSTLLASDFAKTRSFAPNFPFKNSSYPGDGDND
ILPYSYPNFTKSKKAKNADKFFVLTSKEAYESQLKQKQKQAQNEKEKEMRKLKRLQNLKIKEATVLSKDNPRKKPLL
>Mariner-1_SP#DNA/TcMar-Fot1 585-2678 [Strongylocentrotus purpuratus]
MRNYKRKTNRGQTPRDVMERAADAVAGGKSVRSAAKDFAIDRMTLKRYIERRDGQQGTAYAPVALRHQVFSPDMETDLGD
HVKQLSDMFHGLSVNRCCTLAYEFAKQNNVDVPASWDREKKAGQDWWLGFKKRQNLAIRHPEATSLGRATAFNRPVVDKF
FDNLARVMDKYKFSPSEIYNTDETGCTTVQKPAAVVTEKGKKQVGAITSAERGELVTVVYTVSAIGSVVPPLFIFPRVNY
REHFVRGGPTQCIGRSTRSGWINQETFVEYLNHIIKHTRCTPERKILLILDNHDTHISLDAVDTARSHGVVMLTLPPHTS
HRLQPLDRSVYGPLKTAYNRALDGWLRSNPGKTVTIYEIPTLVNQAQMLAVTPSNIIAGFQATGIHPFNRDIFNDLDFAP
AVPTDREQDDAAADGIEVNPPPVDARPPGETPAAGSAPAAPTERERDHAAADGTEMNQPPVDARPPGGDVQPQRQQIDGL
QPSTSREPSLSNVVPRPYVSPSGVHPFPKATARKKTRAGRKKGSTKILTDTPVRQELAALSENRKRKPSAKKPKRSLFKV
KEKKKCPPRSKTPSSSETDCDSEVEYDDESDVDSDGDMDIIEGDFVVVRCAGKSRFLHYIARVDVLNGEDCQFEGVFLQK
VAGKVGTDPVFVPNPDDKAGFELEDILRKLPQPKSVGSSARCSGQLVFKTDLSRWQLS
>MuDR-3_TV#DNA/MuLE-MuDR 781-2454 [Trichomonas vaginalis]
MHIDAPCELKERLSYIDAMKAVIDNECHAGCPYQLKKNPNLGGTKLKFRCSADKCEACISFLKDDEEYILTEYNGTHNHN
QIKDETKKYHTLSQCYRRVLINFIKQGGDPKMAQIECDKKLDLDDPLNRPSFLNASSDQMKTIQEKGNKKIKGIQKYDDN
QFKSTQLFKGIKEQESPKDLIYFDVDNYNKPKKLIFYYASFKFLDIIKIVKEHFIDATHSLLEFKMLFYMISAKFPNTHA
FPIFQFVVYPNTSENIAFCLKAFFNWAKVKPKYFMSDCAQEIENAIINSFPEVILHWCAVHVMRAFRKNLKDYAFESSDK
LILDTKMNYLAYGRNGKKEWIEPTFKKILEIAEKFPEFSKYIQNQWISNQERWTAAERDENLALTNNISESINKKIKYYY
FGGTIFMRFDRFVMKLIDFIVPSFYYRISQDIRLRDKIPNPLPSEKKPKKSTIRLDTEKCIMLTDKIKSLIVNSSANLNT
LQLGLDDLLDKVVKAAKVQKRMTQYFSKLSIPMEIKLSILTQITEFGCNTPQFIVENAKSFQDKIITDFHLQIYTTL
>Polinton-1_DY_polb#DNA/Maverick 1642-4989 [Drosophila yakuba] Polinton-1_DBi_polb mnear-identical
MKHFKTAYKSVYINEDIIDELNSAIDCLLTLSSEFQEKDSGWAIKNFNYFETTIIKLENIPASGYIKAPQKIRARNALIN
VQNADVFCFKWCILAFIANQNHENRTFTTPQQRKYSRERMTKPQSYNININDETIVYGGMTLDFSGIKFPIEKIGVRHFE
KNNVNFSINIYEIDEAGEKIVGPTIKTKERKRNHINILGIDNITQNIMHYAYITNLYTLCSSQFSKGKSGGYFCENCLQC
YHVKSTTHNKLECGKVSSFYPDPNTTTSFKGYHKKLSPPVVIYADIEAVLENYKTCLNSSASSSTTQVQKHTACAVSFYV
AHKDYPNLNELWTYEGKQNNIFIKLYLTYIFKFYNFIGVDCIQTFCKTLKEKTLSLYYKYWVNSKKPRDDTFDEQLQKGN
CCACEKEINASDLDKFFDQFSGEYVGPIHRNCKPKFRLSDPFFPVVFHNLSKYDIHLFITELEGDLSPIPCNKELYIALT
QTIKINATSRYKIRYIDSVRFLNSSLDKLSSYMEDKDFKILSTKFQGEKFKQMRRKGVFPYDYLDSFEKFNDTQLPSIDS
FYNSLSEENCSIDNFNFAQKVWETFNCRTIKDYLKLYLESDVLILADVFENFRKICKKIYKLDPINYVTAPSISWDAMLK
FTNVNLELISDGDMYNFLKRAIRGGLTQCTQRISIANNKYLKNFDPKKPNNFLSYIDANNLYGWAMSQPLPLSGFQFLDK
EEVDSFDYKNIACDGSIGYMLEVDLEYPADKHDLHNYLPFCPENKIPPGGKQRKLIADLTNKSEYIIHLKQLQLCLEHGL
IVRKVHRVLSFTQSCWLKPYIDLNTQQRKLAENDFEKNFFKLMNNAVYGKTMENVAKRRQVALVKHYQSKQNSPGFRQRI
ARNDFHSVEIFGSDLAAIESTPSKIMYDKPIYIGVTVLELSKWLMYEFYYDFLLIKSPSTKIIYMDTDSFILSSEEDFYQ
TIKDNPQRFDTSNYKQENQFNIIQANNKEPGKMKDEHAGKVMTSFAGLKAKAYSCLVDGEGNDPECIKKIKGVKKSVIKR
LNHVDYIECIKYKKTFYGSQRVIRSRSHILYTEIVNKISLNYKDDKRYISPDNCNTLAHGHYNIDNIISSNFTNTQ
>Polinton-1_DPe_int#DNA/Maverick 5728-6648 (reverse) [Drosophila persimilis]
MSKQQVVNEIHKPARRNFIRRKFVQKGINDTWQIDLVEMIPFYKENKGYRHLLTVIDTFSKYAYAVPVKSKTALDVLSAL
KKILKISKHKPKNIQSDQGKEFFNVAFGELMKKNNINHYHTYTHLKASICERFNRTLKNRMWKIFSMQGNHTWIYTLHDL
LKDYNNSYHRTIKMKPIDVNKQNEEFILKTAYNICKVFPKHKFSIGDPVRISKYKGIFTKGYDPNWTTEVFKILKVKSTN
PVTYELEDYKGEMIKGSFYDQELQKVKDENAFLVEKILRRKKEQVFVKWLGFDETHNSWIDKKSILK
>Polinton-1_EI_ptv6#DNA/Maverick 11367-12890 [Entamoeba invadens]
MITVNAYQQQVPFNSNAHSKIAITDPSFHITNIDKSYLSATIKLRLKLVLDEAKTATTCVEKESNACMLFIGLKDSTQWL
DSMKINWKNGTTYYENTKMIYETTISGMCRTQQEKESRAGVYTAWKNAFEHKNNVCGVYVKVDDLLRNSTFDAEMKLIIP
LDNFLPLQSFTSYPNAIFNEFELDIKQRITQNFVYCQVNPAILCDEFNENHLASDKITCSTSDWMKGVSKEFTQIGDKSL
ILGYCYFSSGNSYSQFTGTVQIQESTCTLFQSVINGFNVKDSVLKEIYDKYSKTPLYVPAQITTEYDFPPNQSVSRINCS
NMMSYLNTSMLFFLFPRSNNQCTVSKNPHISDIKVITANRTIPDQQMDTLSSEFSEFQLANTNFDTLFAAPQSIINSLTF
NEYSENTNDSSKHIKYLSDATDFMMSIPLERYGSGCFFDGLYSTANIQLTLQAIPMFGDYNPYIKPSGSTGSVNTNAINI
ILLNDAMWSLSPNKVELLTNVDLDTMFK
>Polinton-1_SP_int#DNA/Maverick 2279-3358 [Strongylocentrotus purpuratus]
MDEYLKKIYGDPENEAGFGGVEKLYRYVKKDGVYNLTRKQIREWLEGNETYTLHRPVRKKFAKSRVMAYAMDELWQLDLV
DMASLSRYNKGYRYLLTCIDVLSKFAWVVALKDKTGKSLVKALKKILESKREPMNIQTDKGTEFTNRIFQSFLKKKNIHF
YTTHNTTKASVVERFNRTLKEKMFKYLTHRDTSKYINVLPRFVRAYNHSHHSSIKTKPILVTKDNEGDIWKTLYLKPKKG
RGKKAKYTAGDRVRISRAKQTFEKGYRPNWTQEVFNVTKSRERDVPVYDIEDDRGEKVMGTFYGPELQKVKKDKEGVFRV
EEVLKKRTRKGKKEYFVKFLGYPSSFNLWVNNIQKSYNNP
>Polinton-1_SP_atp#DNA/Maverick 8985-8347 (Polinton-2_SP_atp > 97% identical) [Strongylocentrotus purpuratus]
MTVKFVHPFTCMVAGPTGSGKTVFVRKLLKYNQDLIEKPPQKIIWCYGVYQKAYTEMMAEVPTIEFIEGFPSSFDGVIDP
NLRNLIIVDDLMAECTKDANMTSLFTRGSHHRNLSVIFIVQNLFHAGKETRTISLNAQYLVIYKNPRDKSQITHLGRQLY
PGQTKYVQEAYNDATKNPYGYLLIDLKANTLESHRLRTHIFPNEFTTVYVPKK
>Polinton-1_DGr_polb#DNA/Maverick 858-4803 via via genewise with Polinton-3_NV_polb, 1 intron (2104:2186), 1 frameshift [Drosophila grimshawi]
MWLIRACPPIQPTPSVTTTTSLPIPPPTPPAPPTIQPTPSSTTTASLSIPSPQAPAPSSTPSPPPPPTPAPSSTHVTTTN
NINSVTNNTNSVASNIICNGVPTQARVCTACNIQIASSKWSAHLRSNAHKMLVFTPVNSQVKLISSGFKNRISTFSFENK
HKNVVDPTEFLGEAAQETLPLIHNVLLTHTACKMNIELFAEYIKFTDDELLMTIKSHQSNMSVITASSDLGEIIKDHSAI
ICVKMDEFQEKDSGWTLSQILRLEININKYTPLKVSSFIETPKVLRNKKAIINVKNADEFCFKWALISALKAPANNQPAR
CSAYKVDAIESDVIQIDGALTLNFSNLDFPLPLDQIKIFEAQNQNISINVFGFDEQSNAVNGPLYVTEMEKNTHISLMLL
ESEERGHFVWIKNLLKVIFNKYFFPKKKTKFLKQIYLFFFYTSRLVRRQLTSHKTQLYFCKTCLNFSHNARMHEEHRQQC
GKVVSTLPAEEKASLSFKNFSRSLDVPFVVYADFECVLTPLNSQLSENVIATSQHIPIAYSYYIKCAFNPTLDKLVLETG
VDAGVKFVKSLIRDVNDIYTCYLSTIKPINMSADDEFRFRNAAICHICEKTLGNDRVRDHCHLTGLYRGAAHNACNINFQ
IAPFVPVFFHNFSKYDSHLFVRELNKVEGDIKVLPLNKELYISLSKFIHIASHDKNLEIRFLDTFRFMASSLDALSSNLD
IASFNNVKAFFPLDDEFHLIRRKGVFPYEYIDSESRLDESALPPRDKFFNSLSNTECSVEDYSHAQKVWSVFGCQSLKDY
MELYLKTDVLLLSDVFQNFRAICKKIYSLDPAHYYTTPGLSWDAMLKTTKIELELLTDINMYRFIQNGIRGGLVQCCKRY
SKANHMYMENYDSTKPSEFLMYLDANNLYGWAMSQYLPYSGFRWMNDAELNAFDISSIKDNSESGYILEVDLLYPDSLHD
YHNDLPFCPSNQKPTSEAKVKKLVADLRSKIKYPIHYRNLQQCLRNGLVLTKIHKILEFKQSPWLKKYIDLNTYHRTLAK
NNFEKDFFKLLNNAVYGKTMENVEKRKDIKLVTSWETTNRNRLGARALIAKANFHSSAQFAEDMYAIQMNRLHNVYDKPM
YLGFTVLELSKWQMYDFHYDYMKPKYQEKVSLNYMDTDSFIYSIETKDFFKDIAEDVEMRFDTSDYPEELSKKYGIRRCN
KKVLGMMKDENNGKRMLEFVGLRAKMYSLSLEGGGCIKKSKGVKKSALDKLTINSYKQCLFEKKTFCDSMLMFRSKIHNL
YTHRIRKTTLSSRDDKRKIKEDGINTYAWGHYRINS
>Kolobok-1_XT_p2#DNA/Kolobok-T2 4718-4072 (1 intron) [Xenopus (silurana) tropicalis]
MRQRADSRKRRECFESDTVHQSEVTVESEEEDTSEEEDIESKEKDERLGKTDWCQCSNCSPMPTVIECVCCHEEPLIKAL
IPDDASCIIEWHRFKSDIIDPERADCALKLTNSKKKKKPNTAAAYMRAIRKAAYRCFTVWVYGYLGTGVRKVIPACVVTA
VREAFPDPKGKYVGFLQACDFAAEDMIFY
>Kolobok-1_CS_tp#DNA/Kolobok-T2 1574-3439 via genewise with Kolobok-1_BF_tp, 2 introns (2354:2422, 2858:2929) [Ciona savignyi]
MEETSSVEISTTGSLVSFSDEIASSVGSSSHTELNVSKKIEYVPSSQSSSSKSSESSNSDDFNAIEGVKLIVYLHCLLQL
FKTCHVPGCHKGLHSKPNVSFKGFAVIITTECVYGHTFVWRSQPFINGYTCNYLIPSTLFVIGKSYLSFLNVCNLLNIKA
VVERHCYYIQNNFIIPVVEMLWKTYNKAVLEELSGQSKKIIVSGDGRCDSPGHCATLGSYTVLDNETNLILAQETVHVSE
VANSYWLEIEGLKRCLAHLKVNHVTVDILSTDMHPGVQKMIRTDFKSICHQYDLWHIAKNLKKRLAASKNTYVNMWISAI
INHLWYSVATCNKNPVLLKEKWTSLLYHIQNQHSWISNEYFHECDHKPYTKEEEEARQWLQPTSDAFAIIQKAVSRTTLL
KALEKVTEGIHTGELESIHSLYTKYCPKRIKFTKMGLQARLRVAALDHNHAVDRKQAENKGGKLRFKIQYSKASRRFVAK
PIKVAKSYNFRKELITAIFSKITKGLFxLLVYLKQNHKLIQVEIKYRYSYYFSTESSMSENIREAEMLVTLSEHAGVEKP
PAEEVIASMRSRFSR
>Kolobok-2_TV_tp#DNA/Kolobok-T2 588-1982  [Trichomonas vaginalis]
MTSQEVHDATNSEIIRVQYEGFGDLIKLDGKSFTFATLICGKTYQEASNLLREAGIDVPSSQYFYRIQKVILEKAKELAE
KSVKNHALQLEPGTVITIDAHFSHVRNADECEFVAMGPKGDIVAKFVIVRSRKGKAGNYTGASCQMESVAADQALQILED
TVGKGIVDGFCHDRDNKSRNIVHKHFPDAVEYQDGFHCKKKFELCWKRLTSNEYAKSDMPIVDSKIFHGIKNRLKIFFNT
LLDKHISKEQKLFYWLHAVDHLIGNHSPEYCLHSTKDEEKEHFIWTAGLENENARNHLLEFLKDSGSVFQIVNPDYATHI
NESYNARSCRFNPKHTNYLSSYEGRTDIATIYHNEGYQGLLELRNLSGIKPIHPILRDSLIEEHKEKKLRSEREKTEEYR
SARSERRKARKLIVKGKGDYGNGQDEEIISNESQNSSEIPKYVIAGMPQEKREPFPLPQIHGFQE
>Polinton-1_CB_pro#DNA/Maverick 15264-14851  [Caenorhabditis briggsae]
MLSEFRKKLRPLTDVDILKLTKDLHIKNFRGVYMRDSLPDEPQKNEVAIVNLDNKEGKGTHWVCYKKDMHNLYYFDSFGL
DPPDELVRYLKQNNQDSQITLSTFQIQNFDTHHCGYYCLLLLKLLEKYDFKNVIINLI
>Polinton1_SM_polb#DNA/Maverick 8898-11976 via tfasty with Polinton-1_CB_polb, 4 frameshifts and 3 stopcodons. [Schmidtea mediterranea]
MGSVKIQFTILIQFEKDGEIKDNFFSNKAELFSDNFLLDGITKLNNKIERFTYLGSGWRVVKIKEIDFILTKYFPINRLA
GHSYIPTPRSLSGKKAIVNVQNNNHHCFIYSILGLLKRSVVRTHRNRITSYENYLDELNFDPIDDCPMRLCNIPKFERKN
KDLKLAINVFTYNEKPSKTLDDINYIPHHPHLDIIHRSKVTDGTPIYLLLLEDGDNYHYTAVFDLDKLMNCHATTSYNVQ
ISVHWCPHCLNGFRLKPAFDTHLPKNKYxKFSNYAKSIIPPFVIYADFESILPLDIRHHQIHIPIAAGLLLINNYTNTKQ
YYNFIGDDCVLAFLKKIDEIALSIVLPYYEVHCQKTICISFNEKREFKDCHTCYLCKTFIRDKVKDHCHFSGKYLGAACR
KCNVSRRIQKQLPVVFHNLRVYDLHHILKYGLNNFLLGNNIIPTTSKKFISLIAYINKLPVRFINSMQFVNSSLAKAVKT
LTDLPLTDSVFDGAIVRPKAIFPYDFAKSREVLESTTELPPIWGSVSADEYATDQQIWTQKNCETMLDVTYFKLDVFLLA
DYFQQFRAKAIAYNTLEPLNFYGIPGMSxASALMTLQEPIELLQDMKMFNFYEGGIRGGLTFVNKHYVASSEDTELLYID
INNLYGWALSQYLPYADFVWVYDGLDEVLNECANVVDIEILPYGYTMEVDIEIPDYLHDFLNNFPIGPEKMCPPNSKVEK
LMLTHWPKKNHVLHxRLLKLYLSLGVKVVKVHRTIKFKQAPIFHAYIEKNRKLRAQSTSELYRDLFKLYNNSLCGKSVEN
LKKRMNLRLCNSDEKMIVYASKPTFKIDRPSYIGKSVLDLSKLRMYELQYKELAKYRNEFNCEINIVAGDTDSFFLEIKN
CRLDTLLPAMIRDSLLDTSNYDPAHPLYSRNLECVIGKFKDESKGLWYEEWVFLRPKCYSLLGTKDTMRAKGVKLLGTEI
EYQSYLDCFNNDTIFTVPQTRIGTRNHQLFTFKNNKIALTNKDDKRNLVGRNSSLAFGHYLRIDA
>Polinton-1_TC_int#DNA/Maverick 1810-2877 [Tribolium castaneum]
TKLNEIKERYFIPRDPLSFSSADKLVKFTNIPKKEIIKWLEGVESYTLHKQVRRRFPRNSYHVTNIGDLFQADLVDMRNI
AKHNRGVNYLLTVIDVFSKFAWVKPLYTKTGKEVAAAFEEIFDERVPVNLQTDKGKAFLAKNVQKLFKQNDINYYVTNNP
DVKAAVVERFNKTLKTKMYKYFTHANSMHYIDVLSDFIHSYNNSYHRTIKMTPNEVNPDNVLQVYNNIMSARKKDIKRIV
PENVYKVGDHVRITKYKHVFEKGYMSNWSGEIFKITDVIMRQPVVYKISDLMGEAIEGVFYHPELQRVTYNPESRFHIEK
VLKKRYKRGKCEFLVQWKNYPSKFNSWIPCSSLSAI
>Polinton-3_HM_atp#DNA/Maverick 14220-15359 [Hydra magnipapillata]
MKIKMENAYEALCQKRGFPLPLNKSSEIGDKELPSEKYDIFKEQVDVYQGNVLIVGPVNSGKSKLTRSIVMNGKFEAKHY
HLINKRELAKEQKQEWQRVCRSDYSKIKSVYFHELDGKKSLDDIIASLLQIQQEAYETQDSNNRKTKTVFIFDDIQDDCL
KSSQYSNLITSGSHLQIGTISCFHALPFKQNTKWNTLVGNYKLIVAFNESPEINRILAEEFPSSNRNRNSAVHLLKEITA
DRTKHDHLALFREHTAKLRSQIDNVDVQIVYVPIASNGEADYEYTQTKIENKPWTTFVNHNYIRVLCKKNVYKLENLIKK
DPELDDDRPPDYENEPIVFSDNKKRKLDFVNKKLKKRRFSSSAESSSCSSSESNNDSDV
>Polinton-2_XT_py#DNA/Maverick 3796-5100 [Xenopus (silurana) tropicalis]
MAFIHTSSVECAKSELDLFEIPPTQTSVEKSFYVEVQPLSAITDTSPLEFYIAGSGEHYLDLNNTLLYITCRILKNDNTV
PADGARVSLINYPIATLFNQLDVTLGDRLISQSNNLYAYRAYIETILNYSTDALSTQFTAGLFYKDTPGQHHTRVLDGDN
EGFTKRARLMERGKTIELLGILHGDIFQQDKLLLSGLDLKIKLTRNKDLFCLMSSEVDPFKVQILNASLFVKRVQVSPAV
RIGHAQGLLTSNAKYIIDRVSMKVFSIPAGSRVCNQENLFLGQLPKLVILGFVDNESFSGAYNRNPLCFYHNYVCFAALY
VDGIQIPSKPYLAEFENGNAIREYMSLVQIAGKKSVDSGFLIDRESFLGGYTLFGFDLTPDQESSSHFSLIRNGNLRAEI
RFSRALDRTVNMIVYGVFDNIIEVNQRREVLYDFL
>Polinton-3_NV_polb#DNA/Maverick 571-4497 [Nematostella vectensis]
MAGLIEMENLKVKDLKALAKERGIPRYYWMRRDELVGALTSTSPPPPPRRVPLPKLVKGLPRPPRITPSNTSESILDGPI
PEINVPILKPSQPPRSSRVQSLKHFANRAANLIKSELDKFADWILSYVPEPIKKTVKEAADKRVERLKERIKRLHEEVED
RFTPKEQQTALKGYLKTHGIAGQRGYDPKTFIARIKPKVLELISRQKKPIKVKFIFTCGFIKEDPATAQIEEELGYFHTE
KPEIVTESTDLSDLFDTMTNYLLGLVELFQKQGSGWQFDQVEYFDINIDPFEPLSGSSYIPLPPKLASKKAIINVKNEND
HECFKWAVTSAVYPREKDPQRFSKQMIENSEKFDWSGIEFPVSLKQIDKFEKQNQYTVNVFGYETKIYPLRISEKDPDNA
INLLLISDDETNHYCWIKNMMRLVSTQIDEFHHTRFLCCRCLNSFRCKQSLEKHSECCGNHEAVGIEMPKIDKDGNLPHI
KFKNYNRKMRVPFVVYADFESFTENIDTCSPDESKSFTKQYQKHKPSGFCYLIKCFDGDISPSELVRYTAESPDEDIPQL
FVESLESDIKKIYDKFRFPKKVKMTPKDKIAYNDATHCHICEGELGEDKVLDHCHLTGKYRGAAHNACNLDHKIPKFFPV
IFHNLSGYDSHLFIKNLGTSEGKINCIPNNEEKYISFTKQIVVDSFTNKEGNKIDVKRDIRFIDSFRFMSASLDSLVGNM
SRECFKNLAEYYEGEELQLLLRKGVFPYDWFDGFSKLDATQLPQREAFHSKLNDTDISEEDHLHARRVWEVFGMGTMRDY
HNLYLESDVLLLADVFENFRDVCLKNYGLDPAWYYTAPGLAWDAALKTTKVRLELLTDYDMLLMIEKGIRGGVSMISNRH
GEANNPYMKEYDPNLPTKYITYLDANNLYGWAMSNPLPTHGFRWMGDQELSGWRDRPCILEVDLEYPHHLHDLHNDYPLA
PESIGLGNVDKLVPNLNDKTKYVIHHETLRLYVSFGLKVTKIHRGVTFEESAWLEPYIDLNTDLRAKATNDFEKDFFKLM
NNSVFGKTMENIRNRVDIRLVTDEKQAKKLISKPNYQHRTIFCENLAAIHMKKTKLIFNKPVYLGMSILDLSKTLMYDFH
YNFVKPKYGEDAKLLFTDTDSLMYEIETKDFYEDISGDVRSMFDTSNFPKGHPSGIEVGVNKKVIGMFKDEAGGQQITEF
VGLRAKLYSYKMDEGKEEKKCKGVKRAVVKKSIGFDDYKDCLFGKKPQMRLMNVIRSHKHDVYTETVNKVALSHEDDKRV
ICDDGIHTFAHGHFRTLLGGGSVSSGTT
>Polinton-3_SP_pro#DNA/Maverick 5779-6060 [Strongylocentrotus purpuratus]
MDTSQIDYVLKQHPSIRTYYGGTYPSDALPRDIGLDKQCFVVNVDPRSQPGSHWVAFYFEGGKGEFFDSYGNEPSFYSKR
FTTFLQRNSVRVVD
>Polinton-3_SP_atp#DNA/Maverick 9590-9066 [Strongylocentrotus purpuratus]
PRKKIVWFYSEYQPCYTNMRRSIPNIEFHENLPSDFNDFTSAERPTLFVIDDLMDVAAGDKRVSALFTKGCHHRNVSVIY
ITQNLFHRGKESRTISLNTQYYCLFKNCRDKLQITCLGKQMYPRRIKFFQEAYHDATKDKWGYLFVDLKPDTCTRGLSPS
YEHFSRRDSIRIRFK
>Polinton-2_NVi_p8#DNA/Maverick 7764-8531 [Nasonia vitripennis]
MAYQEENKLRPVQLLSTLYTLDKSYTTEIIVGLEYSNLQDEYYRPAVRLLGDDSKGITFTHBQWLQFTKCFNDFFKYLCD
HSSSSSDSMTGQQICGTGWTAKFTHSQRDRAIEIVDSSPPKTFAIVSKRNHSTIILKKAKFLRLYEYIVKCIDARLEYLK
FVAGSVSCVARETVEYIKSVNPDNIPVRQFGIYTITLVKAIINLIDDKWFDSVTTTVQTRAMEMKDQIPLSRNDIVDIFY
QLVSHHLDRIVDILX
>Polinton-2_CB_pro#DNA/Maverick 15179-14769  [Caenorhabditis briggsae]
MAKLEKDLKPLTNLDLIELIDTLGIKSFRGVFMRDTLPAKPKDKEVGIVNLDSSEGRGTHWVCYSKNKDKIYYFDSFGLD
PPLELQEYLKNGEDKIKILSSTFQIQDFASHHCGYYCLLLLKLLETKDFQNIVLSFL
>Polinton-1_TV_ptv5#DNA/Maverick 16867-16127 [Trichomonas vaginalis]
MTEIANLLQVPLKQGTNKKGAYNRTMKVPDGMKELVHIVAGLQKDVKQMRNVLTLPEAQAYAKRHGPNWEAHEADITGPN
GKPDGINEVFVTDGQGNIKVINGYKLTISDYPKRKAYNERYPMQFDENGKAVKQYIGEGENGPINSYRHNPYSYFNEELN
AIEEGPDGLPRYSNQFDGQYANIRPEISAKKFFKVALFDPVFANELKDELKQQFQPIIVARIASGALSQAFKDLIKKPLY
QQRGYNL
>Polinton-2_DR_pro#DNA/Maverick 6468-7001 [Danio rerio]
MDTIELTNIMDKVSRNVHFIGVIPCDYLAKTPLRKLPAMAIINTHPSGLPGEHWLAIYINEVGVGCFFDSFGNKPNDVRF
PAFIDDFLRLNCVVVQYSAKQVQDYSSDTCGQHCVFFLYHMAKGKCYDYILKLYSNDFVKNDKRVSTFVKKLKRSRCNEN
VFNCVQCVQLGAVFMSHA
>Polinton-2_NV_polb#DNA/Maverick 3060-7226 [Nematostella vectensis]
MANNNDDYEDDDDDEWLRRLLGILPDPSEDEEDEEEEGEEGQLPPDFFYDELTDTPQFASLDELFDYINYYSNLEDDCVS
SEDPFLGMTTPSDVQQGGGGVKRKHDPEDDRGESGSDKEDVVYELRQTSTKRSVKMRTDCTDYDLKVDLPLRDTLEEALE
DVEGVLDRVLDDTLRGVQGHDYARITIDAPSLRNPIALPFMRRHQLTPQRIMGVIETVVQSNQQFVFEGDFRLHVIRTHL
PSGAGKNKLKNSCTLNTCDLEAWRKGKRSIIRIQNSDELCAARSIAVGMACLTKDPNATKLYKPTRGRTRGPLLPLQTER
AKMLHAEAGVPEGPCGIPEIQQFQRHLAGQGFELNVVSREHANTVIYSGDLPDPKYRLYLYYAKGHFDYVKSMSGLLGRC
YYCTVCKRGYNSRLQHKCVNLCYGCGESDCSPLVPPPEQDHRWDWKYCPECNRYFRTPKCFDNHKLAKPRGLANKKNVTP
RSYCQMYHKCETCGKRIDMIAIQKEGTSHVCGEYKCTVCKEVVPPDHLCYVTVGADALPKDKDGDDSMRLIVFDVEAMPL
GGKHEPNFVGAQKLCDTCKEWPMDRLECATCGVRKHSFVTIQAFCDWLFGGSNAGYTCLAHNFKGYDSYFILEYLFENGI
KPNVIFTGGKVMHLKVDSLNIDMKCTLNFLQMPLSKLPKAFGFDHVTQKGVFPHFFNTVEHQDYVGPMPDLSYYDLRSMK
EEDANAVAQWHQEQVTRGVVFNLREELANYCHQDVEVLKKAVVAFDKLIMEAVGLHPFKIAITIASLSSRILRSKFLEKG
AIGLVPLRGYRGHDVQSLKALQWLKYLERRDGVCIQHAGNGGEVRLAGRIKVDGYAADTYTAYQYQGCFYHGCPTCFLPD
TVNPLTHTTMRELRDHTRATELRLKALGYNYEEVWECQFDARLNSDVQLQALVGEVEHSIPLNPRDAFFGGRTNAIQLHY
EAKVGEGERIHYYDFTSLYPWVNATCEYPVGHPDAIVTENFDEDLRVYKGLMKIRVLPPRDLFFPVLPIRVNQKLMFPLC
RSCAEMEEQGSCNHSDEERAFTGTWCHPEVFKALEEGYTVLRVYEVWHWEEWERLFKGYIDTFLKYKQEASGWPAWCDTD
SDKQRYLDEYERHQGIRLDKEKIAKNPGLRSVAKMGLNCMWGKFGEQPNPRRTKYVSEPIEYFDLLTNDGIEVNDVFIVS
DDLIQVHYKLGERFQELKPHTNVIIAAFTTAFARLALFKLMKRLGPRCLYHDTDSVIFLHSPGEWMPPLGDYLGDLTSEL
DEGDFIDCYSSTGPKSYAYTTYSGKSVCKVKGLHLNVRTADIVNQKTMMELLAAKEGEERHVVLPYTILRNTAARTLHTI
PAHKTFKMVYNKRVRRGMSTYPYGYYFL
>Polinton-2_NV_atp#DNA/Maverick 13533-14339 [Nematostella vectensis]
MEDRRFRCPCAIMVVGPSQSGKTTWVQSLLRQAPKAFDKRFHKIVCCYGQWQPKYDWMQKKLGVEFHQGLPDSVTELFGK
HDTPGLLIIDDLMDQIDRALKIFTQESHHHDITTIFISQNLFPGGKSRTASINSHFFVMFKDPRNKLGIRTLAQQAFPGQ
LDYVMDAYDQATKEPYSCLLIDFHQKTPDNLRLRSDILPDEFPMYAYFPKNSRGGEAYIEGEEGGNTSVNDAQRKRKRSK
GWVDPDDPYTTHGKRKARSRVHPRQVQG
>HAT-29_SM#DNA/hAT-Tip100 293-2870 via tfasty with Zaphod2_tp, 2 frameshifts and 1 stopcodon. [Schmidtea mediterranea]
MSSKKPSGFQNRKRKTLRAQEREKESGRLLKFFKSSLDVSATSDLDRCVGQSDVQQNMSDHADEGISKKEENKREEGVSE
FDIMMQSECSHEIKSSTSATINYVDYNDPGNWPDYCNDNFCQILLQNPPHQIITYNFPKDSKNRRFSPIHYKRKLANGEE
VYRSWLIYSTIKDAVFCFCCKLFNKNSSSILEKSGSKDWKNIGAILSSHERNTFHLDNFQTWKELDVRISKEKTIDNINQ
QNIKEEEQYWRQILERLIALIRVLATQNLAFRGTNEKLYNNNNGNFLKFVEYLALFDPVMNEHLRRVKNQDIMVHYLGKD
IQNELMQILAGAIKNKILSLVKSAKYYSIILDCTPDVSHIEQMTIIIRFVDIIKPLDSEIFEPAVIIREHFLGFVPLEET
TGAFITETLIEKLEQMELQIENLRGQGYDNGSNMKGKEKGVQNRILNINPRAFFIPCNAHSLNLVVNDASKCCLEATEFL
QFSFFSLVQQIYNYFSASTQRWHVFTSHIVNLTVKPLSETRWESRIDALKPIRYQLGAIYDALLMEIFDDPRLNNSSGNT
SRTDAKALADAICKFKFMVSLVTWYNILNEVNVTSKILQKEDSAINSATKQLQVTKNYLLKCRSDNGFEQVLIDAAEIAK
ELETEAKFEPDECRRRRHKRQFEYEAQDEAPQDPKHKFKVEFYYTILDMAIQSIEERFQQLEQHDILFGFLYDISNINKK
TSADILTDCKHLETSLTHKDNKDIDAYDLCNELQVVAQRLPKPMSPSDVLLYIVQQKLEDCVPNVVVSLRILLTLPVSVA
SGERSFSKLKLIKSYLRSTMSQSRLVDLATISIECDYASTLELKELVETFARKKARKIKF
>HAT-22_SM#DNA/hAT-Tip100 1217-3385 [Schmidtea mediterranea]
MENPDVSIIKDLLENPFSRRDVATKNEIVKLSRPVPDIFLSQNVKIKGQQYVRHFQKSIYEKFKWLTGCRELNKLFCWPC
LLFVVNEKDKNIWIKQGYSDLNHFHEAAKKHERTQSHINAVIQLKTFGTVRIDLMLDQQKASSIVQHNEKVTRNRNILKR
LIDVVCYLAKQEEAFRGHNENINSFNRGNYLELVTLISKYDDLLANHLRTATVFSGTSNRIQNDIIASIKNILISEIRNE
VKETPFVAIMLDETSDISHKSQLSVVLRYVNYGVPVERFLFFKDVSGDRSAEALCNVVQETILSWGCENKLIAQTYDGAA
VMAGALNGTQKKVKDIFPEAMFVHCCAHVLNLVLSQSVLFIKDCKLFFATISGIASFFSVSTKRNHVLNETIKRKFPKLA
ATRWNYSSLLVNTIKSERQGLSELFENIIENPEGWDNDTINIAKGYHMFFEEFNSNFLLNIFAKVFSYTDVLFYILQKTN
LDIAYSTQKVEEVKNAIRNMRNDVAFIEVYEETISVVGPPNLKKRRVNLQNSSVDQHFKSLYYEIMDTIFCQLDIRFKKI
SSLKFFELLNFSFFKKYQSKFPDECLNSLKNAYAKHFDFVKLTNELCVLYRSESYHEMNLAKLIQHILVNDLTDALSEVN
KLAHLICTIPFSTASVERSFSALKRVKNYARNTMSQDRLINLSVITIEKEMLHLLQSKPEFYDHVIDDFVKNTDRRMDFV
YK
>hAT-80_HM_tp#DNA/hAT-Tip100 1215-3550 via tfasty with Arthur1_Cis_tp, 1 frameshift. [Hydra magnipapillata]
MMAKAVTIEHEHASMLGFGNDIGLWPELASTDMITFWAEKGPTSLLQNCDQDTLRKYSISQKQEKPDGSTFFRKCTPNLF
LRKTTNSETCQRNWLCFSSHTGKVYCFICKLTGSKSITTNFSSSGFCYWKHASVRVSEHESSKGHLEAIITLAQRGKKSG
GIYHELAKQESEICVYWNQILQRVISTIKFIAERGLAFRGDNEIVGSPHNGNYLGILELLSEYDTFLAAHIKMHANKGRG
HTSYLSSTICEEIINLMGSQVLKYIFCSIKKSKYFSVSVDSTPDEAHIDQLTIIIRYMVYEKLIPNERFLTFIPNTGHTG
REMTEALLKYLESDGISLHDCRGQSYDNAANMSGKYCGMQTLIKEQNDLCIYVPCCAHSLNLVGKAAANTCSAAVKFFDF
VQEVHVFFTASPSRYQILTEALSSSQEKTNKKKLLTPKGLSDTRWSCRHDAVKALVVGYDKFKVALKKISINKEEKDIVR
NAAAGLHKQMCKIEIALYSLFWNEILERFNATNKILQSPEMVLQSAVDALTSLKAFVESKRECFAQYEERAKKLSGSTEY
SQAQRRQRNRNVRLNPLGYETGDEVQQSPSDQFRTTSFIPVIDQFNVSLTDRINAYKNVCEYFGFLNRLDEMEPNEIMMS
ANNLVNKYKPDLEESLGNELVQFSALLKLYMDDYDANANVPKELFFYKILNANNFISSFRNVEILLRMYLVLMVSNCSGE
RSFSKLKLIKNRLRTNMSQNRLSYLTLMSIESDLLREINFSDIVKTFVLQKARKAYISL
>Zaphod2_tp#DNA/hAT-Tip100 822-3353  [Eutheria]
MSEKNFKKLSGSENRKWKAIREENERKLFGSLNKFLEKIDGMPEKKEKTSELLVSAECSTDTSLMEQDVNLPSTSMSTIT
DEFQEKLEEKKSEESIKPNVLSADPGTWPCNLNIKQRDTLVENYPPQVRNFNFPKDSTGRKFSETYYTRILPNGEKITRS
WLLYSTSKDSVFCLYCKLFGDGKNQLKNENGCKDWQHLSHILSKHEESEMHINNSVKYSKLKSDLKKYITIDAAEQRLYE
NEEKYWRAVVERIIYMIQFLARQCLAFRGSSKKLYERDNGNFLHLAETIAKFDNIMAEHLCRIQTSTPNNITHYLGDEIQ
NQIIKIIADAMNEIILNKVRNAKYYSIILDTTPDVSHVEQITIIVRFVDFQNANISICEHFGGFCPVDDITGEGLYTFLV
DYLQKLNLDKNNLRGQGYDNATNMHGKHNGLQQKILEKYSRAFYIPCSAHSLNLVVNDAAKISFDTTEFFYIVQELYNYF
SASTKRWSVLKTHLPNINLKPLSNTRWESRVDAIMPLKTQLEAVCNALLEIVDDINKDIDSRMQAKGILSKISTFKFICS
VLIWHDILSKINVISKMMQEPKFNVHNALESIKGIKKFFEEKRSDDVYEKYIIDAKQIAESLDIDANFSNVENTRKRRKK
THFDCESHDQPIYDPKLNFKINFFFSILDTTISSLKERFTILKEYHGLFSVLDDICNLKNYNERELLQLCKNLQLKLTDE
HSKECDIDGTSMYEELKTLSCFLKSSMTPVEVLQYICSNNLPDTFPNTFVALRIYLTLPISVASGERSFSKLKFIKNYLR
STMSQERLSNLATISIENEILEQVSIETVIKNFISMKARRVTIL
>Zaphod1_Hma_tp#DNA/hAT-Tip100 ref|XP_002169582.1| PREDICTED: similar to zinc finger, MYM-type 5 [Hydra magnipapillata]
MSKRQRDVGRKYLSGNMKRTLAKVKKTEADKEKGALDKYLSKSVDLFETEKSDKQVESDDSETNISKEVTSEASSSFLSG
CNAQQNTSELCINISVNTHKDNEDISESREENSIPALCDILKIKDDPATWPNKINQNVRDYLVNEGPPKITVETFPQNEK
GLHFSEFHCKRKLKNGEVIEQPWLIYSESFDKVYCYYCKLFDTNSDSALGTSGFDSWSNIHTRLEDHEKSKKHLQCTLNC
YELQQRLSTGLTVDTLNEKLIRQETKRWNQVVERLVASVQFLAERNLAFRGSEEQIGNPHNGNFLGVIELLGKFDPVMQD
HIQKIINKDIHDHYLGKTIQNEIIDIARIKSTKYFAVILDCTPDISHQEQMSMVLRYVADGTHLDVPAGIYEHFIKFIIV
ESSTGENLFNTLVKEIEMLGLDVENIRGQGYDNEANMKGHNSGVQARLLERNSRTFYTPCVCHNFNLVLGDMAKTCSDAM
TFFGTLQRIYTLFASSTKRWTVFKKHVKGLSVKPLSETRWECRMESVKAVRFQAAEVCDALEELAKSTNDAQGKSEAESL
VSQMTNYRFLVALCFWHSLLFKWTVFKKHVKGLSVKPLSETRWECRMESVKAVRFQAAEVCDALEELAKSTNDAQGKSEA
ESLVSQMTNYSKELQSNTIDIAAGLTSFEKLFDWLKTYRETGFVAALIDAKELANELEVEPIFQQKRCYKKKKMVNFFNQ
VVDKALQSLQPRFMQLKEHHKLFGFLYNFQNMSKEDLRKHSADLEIALTDITKDIEGFMLSEEMEAIKPILPVQQQKPKE
LFKYLACNDRSTAFPNLFIALKILMTISVTVASGERSFSKLKLIKTYLRSVINQERLNNLALISIESPISREINYEKILK
DFASKKARKIPFDL
>HAT-2_Mad_tp#DNA/hAT-Tip100 954-3365  [Malus x domestica]
MERYYKKQCLNPSPNIPDSPPLPSNIPGSPPPPSSIPSSAQQSEITELDEILANLPADPGLRRRMLDYPLNCREAIRRYY
LQKEPCQPKSHIMPRKASDNRCFITGWFDNFKWLEYSIVKDAAFCRYCYLFKCDFDKAGGSGSDVFTTKGFTNWRKGPEN
FRVHEGGVGSLHNKAMQQAKDLMTQKQHIETFVIKQTDEARVNYHTLLSGALDCTRWLLRQGLAFRGHDESLKSSNRGNY
IELMQFLADHNEKVRKVVFENAPKNLKYTSSDIQKDLVRACAIETINAITKDMEGTFFSLLVDGSRDASNKEQMAVVLRY
VNKKGEAIEKFLGVQHVSSTTSSSLEEAIERLFATTNLSMSKLRGQGYDGASNMRGELNGLKTKILNKYPQAFYIHCFAH
QLQLALVFVAKENEDVANFFINANRLVNLIGSSCKRRDALREKQQEQIQKALHLGNLETGKGLNQESSLMRPCDTRWNSH
YGTIVSIIVMFEAVVEVVEWIKSDRNQDNLGEATGLFKDIQTFDFVFHLFLMRLILGITNELSQALQKKDQDIVNAMALV
EVCKQRLQSLRDDDFGDLLHDVEKFCEEHDIVIPNMEDLHFVPGKSRRKAPKITNFHYYRVDLYFQVLDMQLKELNDRFN
EVNTELLLCMACLSPVNNFASFDKEKIVRLAQLYPQDFDRMDLMNLPIQLDNYIQDMKMHSEFSSLRGISDLAKELVKTG
RCESYMLVYKLLTLALVLPVATASVERAFSAMKIVKTPLRNKMGDQWLSDSMVVYIERDVFAFIDNEPIMRRFHDMKPRR
QQL
>15234974_Ath_tp#DNA/hAT-Tip100 ref|NP_192758.1 hAT dimerisation domain-containing protein / transposase-related   [Arabidopsis thaliana]
MTKSLADSMLRYVKRSTPLKPNENPTSVENDKAEEICEDTDVNMNTIPECVYSGEKDELLEITDPANWKNIDRELRDFLV
EKGPMKRVHEKYAFPKTAGIRRHFSHRYYKREMKNGDKQDRNWLLYSKVSDKVYCFCCKLFGRDQDAMQLSSTGFNDWRN
IRIRLSQHETSHRHIVCMSKWMELELRLRKHLTIDKCLQKDINIEKNHWREVLLRIFSLVKNLAKQNLAFRGENEKIGQK
NNGNFRVLLNRSATLIQSYESISDELKKVQLMIIKKIQEAKYFSVILDCTPDKSHKEQMSLIIRCVDVSMASTQVSEFFL
TFVEVSDKSGEGLFELLCDTLVALNLNINDVRGQGYDNGCNMKGKHKGVQKKLLDINSRAFYTPCGCHSLNLPSHLKKRL
NSLESFSGFTACFHHLQQGLKIRDALDYLAENCDDPKARSDADCLATSETHRIGGFEFLFGMVIWYNLLFTMNTVSKALQ
SENIDIELALVQLKGLVSYLQNYRETGFQEAKAEATLIAESMDIEPKFPVKRKRIIKRKRHFDEEMENDVETELLSEEEN
FKVRFEQFEEYGRIFRFLFDLRKLKSASDDGLKAACINLETSLKHGDSSDVDGNHLFLELKVLKELLPTEITKAIEVLNF
LKKFEGCYPNTWIAFRVMLTVPVSVASAERSFSKLKLIKSYSRSTMSEERLNALAILSIERDLVGELDYISLMNDFAAKT
ARRSIFEIRDDDE
>9294359_Ath#DNA/hAT-Tip100 gi|9294359|dbj|BAB02256.1| unnamed protein product  [Arabidopsis thaliana]
MLRYVKRSKSGKFDESDRVGDENENQEDDKAGEETMADCDKEECEKISKEDDVPVDLEKPPEISILQFTDPANWRKNDQG
LKDYLVQKSSMERVERDYVFPKNDVAFRGTKEKIDERNNGNFLRFIETFEEFDSLTQEHIKRVKEDKSHKEQMSFVIRCV
DVSTTTTRVEELFVTFLEVIDRSGKDFLSCFVIHSMVGGLTLKPLSETRWESRVESVQEIRFQDPKIRDALDYLAENFDD
PKARSDADALATSETHGIGRFEFLFGLVIWYDLLFIVNTNLWMSSPSSSEKKAYHQKKMHFDEEVEKHGESVMLSEEESF
KIDYFYTIVDQAIVSLQARFEQFEEYGKHFGFLIDLRKLKRETEDGLKASCINLETSLKHGKNSDK
>22331419_Ath#DNA/hAT-Tip100 gi|22331419|ref|NP_683609.1| expressed protein  [Arabidopsis thaliana]
MADCDKEECEKISKEDDVPVDLEKPPEISILQFTDPANWRKNDQGLKDYLVQKSSMERVERDYVFPKNDVDGNKMPLSCQ
AHDSTIGGILFALVKNLAKQYIAFRGTKEKIDERNNGNFLRFIETFEEFDSLTQEHIKRVKEGLFELLCYTFGDLKLKID
DVRGQGYDNGSNIKGKHKRVQKRLLDINSIAFYASCGCHSLNLALADMAKSSSKAILFFGISNASTACFHPLHLESVQEI
RFQDPKIRDALDYLAENFDDPKARSDADALATSETHGIGRFEFLFGLVIWYDLLFIVNTVSKVMQIENIAIDTALVQLKG
LLSYFRNYREVEKHGESVMLSEEESFKIDYFYTIVDQAIVSLQARFEQFEEYGKHFGFLIDLRKLKRETEDGLKASCINL
ETSLKHGKNSDK
>HAT-1_TCa#DNA/hAT-Tip100 582-2722 via tfasty with hAT-22_SM, 2 frameshifts. [Tribolium castaneum]
MNPQYDSVVLLLNIPFSRRKEIEKRQILELGRPTPRLCMVKLAGSHSRSFQNSWYASHXWLCGSIFKESLFCWPCLLIGN
VKNVWSSGNGFKDLKNFSRGVKLHEASKEHIKNCIGLKRIEKNTLSVAEALQEHSNFNKILFNENVRKNRLLIAYLIDVT
LLLGKQELAFRGHSETESSVNQGNFREIFQVLIKRNTELTEHVSKFSNIFTGQSKTIQNELISCISDHLREHIFNEITST
NFFVIADDTTDVTEKSQCSLTIRFVNNATIQERFFGFFDVSADRSAESLYLVLMNALNRFDIKNKLVAQSYDGAAVMAGE
LNGLQAKVKSVGPQALFTHCCAHRLNLVLQQGTKCISKCRIFFATLVGIPSFFHQSPKRTFVLNNIIGKSIPRAGETRWS
TRSKIISLVSAEWNNFICVFEEIMNNSTSGAESIRMAKGFLKNFSDFEFAFLTFVFNDIFEITDVLFQILQKKVLNISYC
QDRIKDTENRINTLRTEVFKKIFNIAKNFTGLPSNKRNSSSNEIELFNEYKVLFYEILDYIKMQLNTRFQDFEKLSFFSL
VDSSQFSEFDKKFPSSFLTKLNSIYPNIFDLSRLENELAVIYRDSQFSEAEPIKILELLDSDYKDVFSEVRKLLMIILTI
PATSVSAERSFSCLKRIKTYLRNSIGQDRLNDLAFLSIEKELLNDMSKNPNFYEEIIDKFADLKESRIDLIYK
>47085813_Dre#DNA/hAT-Tip100 gi|47085813|ref|NP_998246.1| zgc:55697 [Danio rerio]
MPNFCAALNCSRNSTHSVLAFFRFPRDPERCKKWVENCSRSDLKDKTPDHLNKYHRLCARHFEPDLITKTSPFRTVLKDS
AVPTIFDNPFKRSNNEADKDAPEAKKNKSDSQSEEPKDNSEAATKDVNENKNGDGVDSSPPVIDEETLNKEYLKSLFDVV
VMMGTQNIPLHGHSDKEPRSKSFTPSNFQALLEYRINAGDEFLRKKFEGSPVNLEHCSSTQLQQILEVIEKCIREELLAE
AKEGRCFSLVVDNLVEIEGENYVPLFVRFVDKANCLREEFVDFLLFEGDVEAITERLVTELTEKCGLDMKYCRGQAYLCS
GVSAMKVKAMVAKIAELHPLAVLTPCSSCSLNICLANTMTFTGVHLVMSTLKKLDAFFSKSPLLQNQLESAISIYYQGNE
EKANVLKEACGSKWTEQHDTFELAVDLLESLLLCMDSVHDSEDHKWSDEVAHNAFVISEALADFEYVMTLVVLKNTLSFT
RAFGKNLQGETNEVFFASGSLTAVLHSLNEVYENIEVYHEFWFEEAVNLAASLEIPVKVPRLYFRKRPTSGEEIQPETYY
KDQVTIPVVSHVIKELSDLFSENHLKALKSLSLVPAIMGQLKFNTTEETSVDIYKDDLLNPDTFPAELHCWKIKWKHGTK
DVILPSTIYETLQLSDVKFFPNVCALLKVLYNLPLFALTNDKCSTAKQRLMAYLQDTPVNHRNKSMALFYINCNIKHDLD
SMVETYLKMYQESEPTEKQDSSQEAVQS
>Zaphod3#DNA/hAT-Tip100 806-2293 (fragment) [Eutheria]
WQILKAKYFGILFDSTPDVSHXDQMCEVIRYVHIEDGKVEIKESFLGFFPISGKTAAELTEETSKQLDSDGLDIXXCRGQ
GYDNAATVAGTHGGVRAKIKEINPKSLFVPCANHSLNLCGVHSFGSVSSCVTFFGTLEKNYSFFSVSPHRWKMLQNVGIT
VKRLSQTRWSAHYEAVRAVKTNFEKLISTFEVLCDPKENVDTRGSAQILLSAVCDFSFLSYLFFWCEVLDEVNQTQKYLQ
TAGISLEQCTVKHQALKLFLEDRRTEIVEKAINYATTKCKEMDIYIEKRIKFRRRMPGETTKDAGLTLPEEIKRAMFECL
DRFHQELDTRSKAMDQIMSMFAIIQPFSLIFAEEEKLRKFLPNIIEIYDEFSGEDILVEIFRLRRHLKAARIDPEETKTW
TVLQFLEFIVKWDFYESLPNLSLCLRLFLTICISVASCERNFSKLKLIKSVLRSTMSEDRLTNLAILSIEHEYAKKINFD
EVIDKFAEVKARKQKL
>Kolobok-2_AA#DNA/Kolobok-Hydra 800-6791 via genescan, 7 introns (969:1019, 1617:1674, 2027:4073, 4996:5055, 5385:5539, 5916:6080, 6382:6441) [Aedes aegypti]
MPRVSKKRRAGILSWITRNKHPEDNPPDEIRLNTSVAIRDTDPDLLEIAQPEAEIDAWSTEFSDVPDASQWLEDVPLPLQ
NIGNHKENCSPRSDCELTEYVNSLAYSNAMGDEELELLLVPSLENPMEPIFANFSENLFADFNLKSPDELDDAGKRLEFH
TKIDTFPSQWIIDAELPSPILSGGQEESTSTPATYSKANERKQVIESDISYGLDQTASLETNHLVLPTSSVTASREALAE
NYIDLVVTDSSSKNQGNRLQKSDSNQHAKRTGWNLSRSKTTIISIPGRPLGASSSLNMDCYCEACLKSAAQHQKPQFNET
TTSTSVESIDKSIEAKMKEIYAELNVDKLQLHPGAQDDKPSYANAPDRFNSHSYRCQAINGDEFTQITIPKWKSLEGRRI
VDYNYFIQWVVMAQATHSRFCCGVLCPRQEEVKSMCSKLWLMCNVCNYIVKGSSEEPSRGTRLRFCTDWAILNSGSTYSM
AQEMFSFLNIPFMDRKTFFKDELAMDTVLEAALQESMNKAIEEEINLASRELPEKQITDDSPINLCCELDGSWGLRSNGH
RYSSASGCAALIGTRSKKVVYIGTRNKRCSACNRNTANKSATEHKCFKNYSGSSGGMESDIVIDGFKTLFEKGVKFTTII
TDGDSTTVSKLKNSCSYGHEIRHQLCCNHTMKNVGKKLREIKCPKQFADHLSSRIERITKGARSAIKHCADSGSEDIEGL
RCDIRNVPYHVFGMHSACRDYFCKHKNESDEIPSIISDLQKCGVWDKISVIMEKLASKAEFLCENKTSNLAENLFCRLCK
YNVGKRIDTMSRGSYQRRVHITALMCNENYEWHNTYMEKFTGEAPGYFTKKMFVEKAQSLERSRKSQKNPNNNRRSKHVQ
KEKDTDYGEAAVEAAEITALEQSVVDVETMRQKYQLHNVTKLRLDNCLTITEMEDLAKGRILSKFIPEIINARDSTKWKK
CDTLLQTTNTWNFLKSNRAVVGLVLRILKEEHALDLKEGHMFIDPCHEFLCCVPDAVSADGSIILLIKKKDSSGDIREQA
ATTKGVLGCKLKNGEVILDRNTNIEIQAAMHISSSAKCIVFLMLGTNVANHLLKIVDEEGSFFTSKIEPKVKTFFEDYYL
KKLFDKQICIRQ
>Kolobok-1_FraCyl_p2#DNA/Kolobok-Hydra 4550-5812 R [Fragilariopsis cylindrus]
MLFSVANGFEQFLLSVSSHFSDETIYLPYDDKLEHPIWIVSQYKPLQVPPMSYLLYEDRSVTFTAEYHLQEVDGEQNTIQ
VLKKIVRVHLPFWTSYTDCVKVIHTLMGGGNPIYKERESDLFTERRMVIGGIAILHEFVYNINNLKSFSKIEDYPEIHAG
SQNRSGIYEMESYMSLDREFDAICNRLHRWVPTVPTQGDVPQVEFEKVDSWSLCYSRQETWKETHARINEQCKRFRITNF
KEPTRMLCYYSPGGNSSRQNCTHCNCHPCAWEINRVEIIRNVNSMRGESRYSANERRFLGYRFFYFILHDGYGPINKRVP
LPRCGTEAIKKEWPNPPGVGFTGFKLHRRRTNTVRAVSSPQARLPADVSTRQSICRPRQIKYYIDPKKKPNEVIEIHDEV
QIKIEKGVKEVIEIEDDDDDE
>Kolobok-5_HM_tp#DNA/Kolobok-Hydra 626-2272 via tfasty with Kolobok-7_HM_tp, 5 frameshifts and 1 stopcodon. [Hydra magnipapillata]
ENYNVIINFSILKNSYLIILVGCPECNSCIVFTDDNDKRSGFSHKLNFKCTKCKFQYCTYTSDDVKKSVPKQGRNYFDIN
LRMVIAFREIGKGHQALVDFARIANTSCMNNNAFNKLNSTIQNAYKLSAEQSTKAAAIKVKHKVKEEHIGSGKKLIKVSS
DGSWQKRGHVSLNGVVTTISEGRCIDFEVFSKYCRGCKMWKRKQNHPGYTEWKANHICSLNHTASSGAMESAGAVKIFNR
SVEKYDLIYKYYLGDGDSSAFNDVLSSNPYGKYQVSQPEKLECVGHIQKRIGTRLRNRRKDRHHGNQLTGKGKLTECASV
NTIQNYFGMAIRQAAANNSLSENEKVYQMKKNISAVLYHCTNFPDQFHRHVLCPVGPNSWCKWKKGKNSDSGNSYLHTNK
LNLPVWIYDIIKKDFEELSDDDLLKKCIHGQTQNSNEGLNNIIWSRCPKNIFVHKASFLELGVNSAVLYFNEGTAGVQRV
MSHLNLENGVTICSVLILxKKTKNALPNMNKKDTFEKKRRRIHLKSINKGWQDEEEQLETFKPYYSSGSF
>Kolobok-20_HMa_tp#DNA/Kolobok-Hydra 424-2211 [Hydra magnipapillata]
MANKNNKQRKKLKRKFSGNQHTNRKIESLDKTSLQDEKNNPSLSLCKKSSITPNESNCNLFIELQIFKCVIDMVGICPDC
TSKINLKLINEKHQGFANNMFLQCYKCDWTHEFYSSSFISKKDNTELRGKKKFDINTRLVIAFREIGHGFEAIEKFSTFM
NMPSSMSKNAYNNINKSVYQAYADCANESMKKAAKEVRQIIKPNSNAVELLESDISIDGSWQKRGYNSLNGVVTGIAREN
QKVLDVQVFSEFCYGCSKWEDKFGSAEYIDWKAKHICQINHRTSSGSMESQGAVNIFASSIEKYNLRYTHYIGDGDTDSF
EQVLDSKPYGEIAPKKLECIGHVQKRLGTRLRKLRSDTKXXKLADGKSISGKGRLTDKXINXLQNYFGMAIRQNIGKLYA
MKKAVFAVFRHFTDIKNLDVRHQFCPRSAISWCKYQSDKITGLSKYNSKGIIPEXIKKEIEKIFXDLSSDELLSKCLQGX
TQNANEXXNQILWRKCPKNTFVXKDILEMGTFSSVVSFNDGFLALDNVLKNLGLTPGKYFFDRALVFDSKRVKNIQKKST
BIVKNKRKKLRALRKGFIDKEKHKEGGDSYSKGSF
>Kolobok-10_HM_tp#DNA/Kolobok-Hydra 375-2171  [Hydra magnipapillata]
MDKSKTEYKSDRVKFSTKRLRKRKCTFSGLRKQEKCVNIGVNNVNSNNENMVDSVNIESESVFKSASKKKVKQVMVPSGN
SKCVSGYRFIDLEILASIFDKLGCPECLRPSQLSLSENKKSCKGYASNLSLNCVCGFKLDFDTSKNVAGFDINKRLVYAM
RTLGQGQAGLHRFATLMNIPKGLCNKSYNVIVQKLATAAQTVAVETMNEAVQELREGKSLNEILDIGVSVDGTWQKRGFN
SHNGVTAALSIKNGKVLDVEALSRKCKICDKNQDVGNSKQQLTAKKSHICNKNYEGSAGGMETVGAIKIFNRSLQKFNLR
YTEYLGDGDSKSYTSVKNTYKGIEVIKLDCIGHFQKRIGSRCRQLKKQVKGLNGKGGLTNATIDRLQNYFGICIRQNCGN
LEGMRSSALASLFHVASSSKNNWHYPHCPTGKDSWCKYNRDKANGTKEYKPGPGLPIEIVHKLKPIYVELTSDAYLNRLL
HGRTQNQNESFNAMIWSRIPKSKYVSLTQLKFGLYDAIGAFNIGLKSSILIFERLNMIPGQHTISGCNYLNQKRVMMSEY
KNQDTIKKKRKILRSRKLKKFDKVEQKEGKLYGAGVHD
>Kolobok-1_Aplcal#DNA/Kolobok-Hydra 1483-3249 [Aplysia californica]
MPASSSILDIPETPRPVFPPDPLLLIPLRSQEKLSRYVVPAAAEDTSRAIVELSQVEGLFKQLQCPQCGIVGTLSLRQMG
QFGLALRLSLFCSECSSVVGKPQYTSSLDTSTPAKRKPFKVNQSATAAALMSGLGPYQFNTLCAHLDLPGLNPKTFNKYA
TQVYGKSESLADKVFLQAANAVRQAYQSMGCVAEDGVLDIAVSFDGSWLTRGHKSLIGIGCVIDVLTGLVLDSHVLSLHC
QTCATTGQWKKTNTPLAYDAWLTEHKASGCNINYGGSSGMMEVEAAVVLWSRSMEKFGLRYTTFVGDGDSKAFNKVTEVK
PYGPGVQIVKEECLNHVGKRLGTALRNLVSDCSKKGVTLGGRGHGRLTANTIRKLSIYYSRAIRSQATAAEMRTAILASV
HHGYSTDDHPQHMYCPSGNDSWCFYKKSLARHVYPGGHKNRVHTPLNYELLHEHLRPVYERLTADSLLLRCERKATQNAN
ESFHHSVWAKCSKTQFRSKQRVEVAVITAAAEFNFGPGYTTELKDLLGVPSGVNTERLNSARTTKRLYKSQDVQKAAAKR
RKVMRAKAIEQARLEAEKEDGVAYGPGMF
>45238703_Tni#DNA/hAT-Tol2 gi|45238703|emb|CAE54614.1| putative transposase [Tetraodon nigroviridis]
MTQAKTDDLIFNFIVEDCQSFYVLEQPGFRKLITGLTEGLKSMDRVTLFTKVDQGFSAMRDQLMEKLAGVQYVCTTADVW
TAHGRSFFGMTCHWIDPASLERRSAALGFARLQGRITYDAIAGRIHQIHVAHNIESKVQTTITDNGSPFVSVFKEFALDA
SESEDDIGVYENVSAVLEGESEQDVLLFLPSVQRCASHTLQLIVAEDFWQAVSQGPMCQLHYSAMAKVCAIWSKCHHLTV
GLDAAEEIGKMALVVPAVICWNVEYCAVQKVMTLTERELTELCARLEVPRLQPEEMAFLREYVTVFHPLAFALELFQAEQ
KCYLGLVIPTLLSLKNKLSEQKDSANYLGDVINAVVVAIDVRFQELFSSAEARIATATTPQFRLWWMGASEREDMCTLLA
TEASQMDPANVVEANTSRRLSTIESEDDFFSYGSVKPAVQIQQRGVMEEVRKYVEGSGKSLDCLQDFPRVKQLFLKYNTT
LPSAAPVQRLFSQKGNLVTSQRNFLTDDYFERIQLLRYNRNLCTAATP
>Zaphod3_Osa_tp#DNA/hAT-Tip100 gi|77556186|gb|ABA98982.1| hAT family dimerisation domain containing protein, expressed [Oryza sativa (japonica cultivar-group)]
MLPKKHASGSEKRKKKRRIEDLIQLQKGAINKFFKSNTSTSRNPDEWAIVAVEEQTMHPEDQGPIEDNVGINTDDNNVSD
HEPIFNSPTTESTRVDDEPIFTFDMYDPVNWDNLDNKARDILVEKGPIREGNIVFPLDVNTRHFSYTHYSRKMSNGEVRD
RKWLVYSKSVDKVFCFCCKLFDSSNRKSSLGHDGFRDWRHVSERLKEHEVSVDHMTNMNSWNELRVRLSKHETIDKELQH
QITKEKECIRQVLFRLVAIIKFLGKRSLAFRGSSDQLYNDVNGNFLACCEMVAEFDLVMQDHLRHIQNKELQYHYLSHKI
QNELSSLMASSITSSIIKIVKASKYFSVILDCTPDVSHQEQMSLLVRCVHMSDGKIKVGEYFIGFLKVDDTSGSGLFNVL
VDSIKSFGLNVDDIRGQGYDDGSNMKGKHKGVQKRLLDINPRALYMPCACYGLNLTLCDMAKSCRKAISFFGIVQRIYVL
FSSSTKRWNVLLDHVKDLTVKSLSNTRWESRIKSVRAIRYQAPQLRSALLWLSEGRDTEPKDRSDAKNLYDVLGSFEFIL
GMVIWHDILYSVNIVSKKLQSPSMCIDSTLQHIEGMVSYFQSYRNNGFADSLVAATEIALEMGVEPSFPVERQSQRKKQF
DETEYNEAILQAEKDFEVNYFLVMVDMAISSLKSRFQELQSFNGIFGFLMNSTSLKSLDAADLKDQCTKFAQTFSLDGSS
DVDINDLISELGVIQFTLPDRPMSAMEIFEFVTEADCYPNISIAYRILFTMPVTVASAEITFSKLKLLKNYLRSVMSQER
LNGLATLCIEKKLLDEIDIDAIVDDFASLHVRRNF
>Tol2_Ola_tp#DNA/hAT-Tol2 gi|6468208|dbj|BAA87039.1| Tol2 transposase [Oryzias latipes]
MEEVCDSSAAASSTVQNQPQDQEHPWPYLREFFSLSGVNKDSFKMKCVLCLPLNKEISAFKSSPSNLRKHIERMHPNYLK
NYSKLTAQKRKIGTSTHASSSKQLKVDSVFPVKHVSPVTVNKAILRYIIQGLHPFSTVDLPSFKELISTLQPGISVITRP
TLRSKIAEAALIMKQKVTAAMSEVEWIATTTDCWTARRKSFIGVTAHWINPGSLERHSAALACKRLMGSHTFEVLASAMN
DIHSEYEIRDKVVCTTTDSGSNFMKAFRVFGVENNDIETEARRCESDDTDSEGCGEGSDGVEFQDASRVLDQDDGFEFQL
PKHQKCACHLLNLVSSVDAQKALSNEHYKKLYRSVFGKCQALWNKSSRSALAAEAVESESRLQLLRPNQTRWNSTFMAVD
RILQICKEAGEGALRNICTSLEVPMFNPAEMLFLTEWANTMRPVAKVLDILQAETNTQLGWLLPSVHQLSLKLQRLHHSL
RYCDPLVDALQQGIQTRFKHMFEDPEIIAAAILLPKFRTSWTNDETIIKRGMDYIRVHLEPLDHKKELANSSSDDEDFFA
SLKPTTHEASKELDGYLACVSDTRESLLTFPAICSLSIKTNTPLPASAACERLFSTAGLLFSPKRARLDTNNFENQLLLK
LNLRFYNFE
>Kolobok1-2_NV_tp#DNA/Kolobok-Hydra 420-2107 via tfasty with Kolobok-2_HM_tp, 1 frameshift and 2 stopcodons. [Nematostella vectensis]
MPKNRSVRRPKRRFSGNQHTKLQETLPKIAKKDDVDETRVDVNTSSRRSVSSKKLSKDVPKLSTSFQEQSGEPFITGYRL
IDMEILSEILYSLRCSECADSSLTLMENQLQRKGCASSLRLLCSSCGWKTEFFTSKxQAKSYEVNRRLVYSMRSLGKGHS
GAKRFCTLMNMPPPPTARAYSKNSKTISKHIKAIANETMKRAAIEIKDQKAASADDIVNCGVSCDGTWQKRGFCxKNGCV
TVISMDNGKVLDTEALSQSCKQCQQHPNLDKESIAYKTWWAEHSFKCNANYHGSAPGMESVGASRLFSRSIDKHKLRYSE
LYADGDSKSHTEVKHMYEDDNVCCRKKECVGHVQKRMGTALRKLKKTNAGIGGKGKLTDAMIDKLQNYYGIAIRSNLDDL
KGMKKAIYATLFHCASNDKVVLHDYCPDGPNSWCGYKRDSANKTKTFKHGSGLPKDIICMIWQRVPKEVFVARLVLEFGL
YDAVAHFNQGSETVVDLFRRLKIDAGKYTNSGCTALDLGRIYGAEYKERDIQKKRRKVLRGQRKRKEDKKQQQEGPRYCA
GSF
>IS186_tp#DNA/IS 44-1330 [Root]
FNVPMNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVA
LLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERL
DRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNK
KAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFK
RLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIISHRWISPPEVPDPKRRTNSLWRITKMVIWSLQVAIRGTVSLTA
YKTQLKNARHRLNEAPRRRILQMVQPLS
>40063663_uba#DNA/MuLE-MuDR gi|40063663|gb|AAR38452.1| transposase, IS256 family [Uncultured bacterium 582]
METTNIVDFARRDRVTEALTDLLRTGAQQLTATTVEAELTSYLAQFTDVRTEAGHAAVVRNGHHPARPFQTGIGPVSVQI
PKVRSMDGTSVTFRSARVPPDVRRTKTLEAALPWLYLNGISSGEMGAALKILLGSEAKDLSANTVSRLKGEWAKEYDGLR
DADLDDGPIVYIWADGVHSGLRGENDKLCALVVVGVTARGQERLLAIEDGVREATQSWREVLLSLKSRGMNAHKLAIGDG
AMGFWAALDEVYPEARQQRCWQHKTMNVLNCLAKLSQPKAKAAIHNIWQAENKVDAEKAFNLFIETYEPKSPKAALCLQK
DRIERMAFFDFSVQHWQSTRTSSPIEPAFATIRHRTKRSKGRLSRDGMRHMMSKLGQCAEQNWRKPSGFDCLTKVITGHT
FKDGIETTDPDQIAA
>37519902_Gvi#DNA/MuLE-MuDR gi|37519902|ref|NP_923279.1| putative transposase [Gloeobacter violaceus PCC 7421]
MTIRKEILDELLKDYDGTDPQTILGEGGLLKQLTKAVIERALEAELETHLGYKKHEAAGKGTGNSRNGKSQKTLQAECGA
VELAVPRDRNAEFEPVVVRKGQTRLAGLDEKILALYARGMTTRDIQAQLLEMYGVDVSSTLISNVTDAVMDEVRQWQNRP
LEAVYPIAYFDCLHVKVRDNGRVVNKAVYLALGVDIEGQKELLGIWLSAHEGAKFWLGILTELSNRGLKDILIACVDGLT
GLPEAIESVYPGCLVQLCMVHMVRNSCKYVSWKDRKALCADLRSIYSAATEDEAELHLELLREKWDKPYPSVGRMWRENW
SRVIPIFRFGEDIRKVIYTTNAIESLNMTIRKVSRNHRIMPNDESVMKMVYLAIQNQMKKWTMPIRAWRPALNRLMIEFE
GRLKV
>42520146_Wen#DNA/MuLE-MuDR gi|42520146|ref|NP_966061.1| transposase, IS256 family [Wolbachia endosymbiont of Drosophila melanogaster]
MSQANRTNGLVDYKELETNILSSIQEGKPLTGRDGALTPFIKRLLEASLEGEIESHMSAKSEENNRRNGRNAKTLRTSAG
SFELLTPRDREGNFEPQIVKKRQTSLHPELEAKVLSTYASGMGYRDIASHVEEIYDHKISAAEISSITDKLLPIINEWRS
RPLQSVYPIVFMDGMFFKVKEDGHCVSKCMYNILGINQNGRKEVLGFYLAESEGATFWLGVLNDLKERGVEDILIACIDG
LKSFPTAINSVFPSAEVQLCIVHQIRNSLKYVSSKDVKVFMNDLKKIYRASSKEIAENYLLELEEKWGEKYPLVIKSWQN
NWENLSSYFKYSGPVRKLIYTTNPIEGLHRQIRKFTKTKGSFTSTNALYKQVYCAIKKVEQKWIMALPNWALTMSQLDIF
FPGRLKIELN
>48788992_Bfu#DNA/MuLE-MuDR gi|48788992|ref|ZP_00284971.1| COG3328: Transposase and inactivated derivatives  (96% similar to one in Burkholderia cepacia R1808) [Burkholderia fungorum LB400]
MSKFTEKEVIGLSGAGLGLDELVRQGARQVIQQAIEAELAELMERFANVKTMHGQRAVVRNGYLPEREVLTAAGPIPVKV
PKVRDRSGSGVKFNSSIVPPYVRKSPRVSAALPWLYLKGISTGDMSEALSVLLGEDAKGLSANVVSRLKAQWTEEHVAWS
KRDLSKSRYVYWWVDGIHTGLRSENSDGQCLLVIIGVRPDGSKERVAIGDGYRETKASWLELLLELKARGLQAGPLLAVG
DGAMGFWAALEEVFPATRGQRCWFHKMGNVLNALPKSQQGRAKADMQAIWMAATRAEAHAAFDRFVSIYAAKYPKAAETL
KKDRDSLLAFYDFPAEHWQHLRTTNAIESTFATVRHRTTRTRNCVSRPTFLGLAFKLIEEAEKTWRRINGPEKIKLLLEG
IAFKDGEPVQDDRPVQQKRAA
>48785218_Bfu#DNA/MuLE-MuDR gi|48785218|ref|ZP_00281468.1| COG3328: Transposase and inactivated derivatives  [Burkholderia fungorum LB400]
MTEATVTKKSKNLKAPKLFPDELIDQLLAQVQGKDAESILGESGLAGQLRKQLAERMLAAGLNHHLETESEQGKAGNHRN
GTSPKTVLTPSGELKLDIPRERQATSGPQLVGKYQRRLPGFDDHVISMYARGMSVREIQGHLLELYGLQVSPGLISTITD
EVLADVEEWQQRPLEAMYPIVYFDALRLKIRDEGTVRNKAVYLALGIRADGRKEVPGLWIEQTEGAKFWLKVFNELKNRG
LHDILIAVVDGLRGFPEAIEAVYPAAQIQTCIVHLIRNSLNLAGWKDRQPLAAALDAFAQGEWGRKFPTVAAMWQRQWEQ
VIPFFAYPPEMRRIVYTTNAIESMHMQWRKIVKNRGHFPSDEAASKLLYLAFAQHRKGLEDAACHLAASSQPVRHPVRRT
IHLRHQLRFLTGLSTQDF
>28373056_Yen#DNA/MuLE-MuDR gi|28373056|ref|NP_783715.1| transposase [Yersinia enterocolitica]
MSQPFDFDKALKALQDGQALTGKDGILTPLIKQLTEAALAAELDSHLAQDIEANRKNGSTKKTVKTPTGAFELATPRDRN
GSFEPQLVKKHQTTLSDEIERKIIRMFALGMSYKDISQEIEDLYAFSVSSATITAVTDKVIPELKQWQQRPLEAVYPFVW
LDAIHYKIREDGHYQSKAVYTVLALNLEGKKENLGLYLSENEGANFWLSVLTDLQNRGVDDILIACVDGLTRFPEAINSI
YPDTEVQLCVIHQIRNSIKYVASKHHKAFMADLKPVYRAVSKVAAETALDELEEKWGQQYPVVLQSWRRKWENLSHYFRY
PATIRKVIYTTNAIESVHRQFRKLTKTKGAFPNENSLLKLLYLRLMNAQEKWAMPIQSWNLTLSQLAIYFEGRLDKVITL
>18539138_Cin#DNA/MuLE-MuDR gi|18539138|emb|CAC82100.3| putative recombinase [Chelonus inanitus bracovirus]
MHIRRERVKNHPKLPKTFNELRNILVNYGPAQTIYQGQVVISKTCSAVIFASNAVLERMNDSQELYVDGTFKCVPKDIGA
KQLLIFHMRKMDVGIASVLVLCTNQGTDLYKGIWNFLLERVPRLKENLKFVMMDFERALIKSTKETMPSVVIRGCWFHFT
KAISTYWQDLGLKNVPSSSVQDILSLSWVLPLLPKKHFPTAIAFYEKKAEEVEPEYQDKVNKFIAYLKKQWLRIAEIVSL
WGSPIRTNNICESFHRWVSKRLGNHPNFYVFIDKLTKVITEIENKWQELQRDGSASGTKCFKQFKIDSYIHNQQIALRNG
RIDVDEFLLKMKTRTVKDFIQLKLYSPQNVKDFNLEDRLDPEELADLLGHPQGMEVIDHTTVESSKVMQKKKSTITQDLE
VTQEPEVLQEAMAEPVTVPETVEVKPNPVVRKRKPAYLSHNSEILTRKSKQRKLRGRPTKESQQKSYAAGLSSKTTSKRI
SKNKKSRSLLVLKDEPRYKISPTLKAALKRAEKNKGHYIQRITDNEPRFKFSPSFKKILIKEERSTIQ
>17534253_Cel#DNA/MuLE-MuDR gi|17534253|ref|NP_494132.1| mutator-like transposase family member (2C224) [Caenorhabditis elegans]
MRMLLEVDLDDIPDFKEMKNQRIECPFPDCPDDEVKYSHCRSYLCMHFRTDHDTDHEVEDMFFHTKENYEAWLAERLEET
GTSLKIRSSSENGGRRTIHMTCIHEGSYEPKKDGEKRGHKSKKQTGDMVCTAFLKSVTANGEINVQACFQHFGHEINVAD
LKLTSTQKNVLAELASKGLSNPAIVEEAKKSSNEFSKLFCLLPQDIRNLKDSLGLNQEQLDKVDLESVKKRVQLEDPADG
FRHFTLPDENGMNFLLVIITPGHLENLRKYSHKIIILDDTHNVTMYGLKLTTITVVDNNDRGEPAGFLLSSSTTSAEVAV
FFQKVKELYPEFRPAFFMSDEANCFWNGFSAVFDSTHTKKVLCRWHLLRSWCKKAKELMMSDKDLLDKTTRALRELIREP
RQDRLIHRILSLLTELDESGNAKAKQFSDYFMKYQYNRIGQWSTTSRANIACHTSMFAESWHSVLKGQMGKKRRIRCDKL
IAVLLSTSDMVAHRKSVQSKRSMYSGCSRKGQNHQKCRQFKNEEKKYLFIQKEDGSYNVRMEGDNKEYTHSRCNSIINFL
KENTHCEECHACAYRCHCDCLFSTAGVACKHIHGVLSYIAKCIRQEELTGENFMMALVNTNLRKQLREGAEELPGNVVKV
KNFLKEYLAESSTPTLVERADSRDQPLTARQSMHMESTLKVREKTKRRGVESSNVKLLPKRRLERCSICAAQDPMLHPDT
DPQEFESRVTDWKRCVICKSPAHISCALVSKKCPCSLDSSFELFPKNYLDDLDSDEFSE
>21234258_Sco#DNA/MuLE-MuDR gi|21234258|ref|NP_639869.1| putative transposon transposase [Streptomyces coelicolor A3(2)]
MLSVVNDDGTTPNGSLIDEIVREGARRMLAAALEAEVNAYVAELADQRDEAGRRLVVRNGYHQPRKVTTAAGAVEVKAPR
VNDKRVDAETGERKRFSSAILPPWCRKSPKFSEVLPLLYLHGLSSGDFVPALEQFLGSSAGLSPATVTRLTQQWQADHAA
FMDRYLPEVDYVYVWADGIHLNVRLEEAKACVLVLVGVRADGSKELVALKDGYRESAEAWADLMRDCARRGMRAPVLAVG
DGALGFWKALAEVFPATREQRCWVHKTANVLDAMPKSAQPGAKKAIQDIYNAEDKQHAQAAVKTFSQLYGAKFPKAVKKI
TDDQAELLTFFDFPAEHWIHLRTTNPIESTFATVRLRTKVTRGAGSRTAALAMVFKLVESAQQRWRAVNAPHLVALVRAG
ARFEGGQLIERSARAA
>27817685_Rox#DNA/MuLE-MuDR gi|27817685|emb|CAD61112.1| putative transposase [Ralstonia oxalatica]
MPRKTKTTASADKAAQPQFSAELLEQLIPGPVTPAELEGIFQQFKKSVLERALGAEMSHHLGYAPGQAKPEGAAANHRNG
KSAKTVLTDAGALRIDVPRDREGTFEPQLIGKHERRFTGFDDKIVAMYARGMTVREIQGFLAEMYSVDVSPDLISSVTDA
VMSEVTAWQSRPLESMYPVVFFDALRVKIREDAVVRSKAVYLALGVLPDGSRDILGIWIENTEGAKFWMKVFNDLKTRGV
HDILIAVTDGLKGMPEALGTVFPATTLQTCIVHLIRNSLDFASWKDRKALAAAIKPIYTAVSAEAAEAELLAFEAGPWGQ
KFPTVVGAWRRAWDKVIPFFAFPPEVRRVIYTTNAIESVNARLRKIIKTRGHFPAMTRPPS
>27376890_Bja#DNA/MuLE-MuDR gi|27376890|ref|NP_768419.1| bll1779 [Bradyrhizobium japonicum USDA 110]
MSSLPEPQGERYAMNEHSNIVPLRQPDEIDDPLTNILRSGARQLLAQAVEMEAEAFLAAMKGLKRPDGRDRLVRHGHGPV
RTIQTGIGAVEVARVKIRDRAVTSDGERIRFTSAILPLWARRTKSLDALLPVLYLRGISTGDFQEALAALLGKDAPNLSP
GVVSRLTTEWQLEYERWQKRDLSARRYVYVWADGVFLQARMEDHSECMLVLIGATPEGKKELIGFQVGVRESTQSWHELL
VEAKTRGLKIAPEIAVGDGALGFWKALDEVFPATRHQRCWVHKTANILNKVAVSVQASMKKDLREVYLASNRASAEVAID
VFAEKYGAKYDKAVECLTKDRDAMLAFYEFPAEHWDHLRTTNPIESVFATVRHRTVRTKGSLSSTTAKLMVFKLLCAASK
TWRRLKGTNQLPKVSAGVRFENGIEVIQVPENHAA
>48831894_Msp#DNA/MuLE-MuDR gi|48831894|ref|ZP_00288943.1| COG3328: Transposase and inactivated derivatives [Magnetococcus sp. MC-1]
MSKNSVNQELTVVSTETREAFDELSESFDRFCLRTGLEALETLMAEEVEQLCGPSHARDDQQAYRWGSTKGEVPFHGGKV
QIKRPRVRDKSGKEKPLDSYLEARDHALLSRWAMNQMLLGVTTRRFGRSVRLPEGDIPRQDGDGTSKSAVSRRFVALSQV
KMQEWLQQDLSDLDLLVIQIDGLVVNKHSMIAAMGIDTKGIKHPLSLMEGATENHVVVQALLDDLIERGVNPKRAMFFLL
DGSKALSKAVRNTYGQLALIQRCQVHKSRNILDRLDEAMKISVRKALRQAWDAESPELAEKLLRNLANRLKSTNQQAAAS
ILEGLDEILCLIRLGLPPELRKALATTNAIENMMGTIRRVTRNVKRWKNSNMRLRWTAAGMLEAKKGFQRLRAYRQLPHL
KAKLEEHTQKVLAETSLQKQSEAA
>MuDR4x_AP#DNA/MuLE-MuDR 543-1999 via genewise with MuDR1x_AP#DNA, 1 introns (1420:1487) [Acyrthosiphon pisum]
MNFTIVSSERKNDLILYNDYKYYKKDYVKYLDAFKWQCVKKKCTAKMYVNKATNKKLKDESIHNINHKEETTSILKKSFS
NGLKRKSEDELERPSKIINRGILKNPEVTQTFTSTDINNIYQCLYRSRRSSYPKLPTNLNEVIDVMSERQIKTVQDENFV
LVVNSDNKIICFSTKSNLKLLCSVDKIFVDGTFTYCAKYFLQLFTIHIFKNGHYVPLVYFLLPDKCKDTYARSFGYVIEK
FSEINLSFSPSKIVSDFEEAIHIGAKTIWPEIQIVGCRFHLTQNWWKHIQNLGLSKEYKDESSEIGNWLKLVFGLPLLNS
EEVSDCFATDLMSIAPDDERVGKFCDYLVEYYIDEGAKFNPHIWASREITSERTTNSCESYHSKFNSQFTKAHPNIFIFT
HVLNTKIQTDTYMLINGININTISKNSAFNKKKQNIKNLSNDLNDNKISKFTYLKHVSKYYQK
>MuDR1_HV#DNA/MuLE-MuDR 1842-4254 via tfasty with MuDR3_OS, 1 frameshift and 1 stopcodon. [Hordeum vulgare]
MTLEAFVVEGGNRWVLRRVTGERAWASYMGFASNPNNSMYGQPMVYVEFISASDVAECSSSAGEAELAITVTPDAGPSEP
RGGQQVAITVAPDAGPTEPTGGQQVYDTGYWSAVVDMSEHVEGLPEALDDDDDGHSSASSESDDDEVVPPENAVAAAINP
EFLQVMSITNEFHSVADLDAGSLAIGQIFPDKKSAKQAIHSYAIAIHRQHRVKQSDKKELKLICIHREAGCRGRVIARQK
PGVCQPWHVTKIEQHGCEQTGTLSEHRNVTAEYVSQVMQTIVQQSLNISIRALRATASDLIGFPVSYSKARHAKEKIFQR
LYGTYEEAYSFAPRMLHQISLANRGTQVFRKERPNPLNPDEQILDRLFWAFAQTIQAFKHCRPVVSIDGTFLTGKYKGTL
LVAMAADANNQLLPIAYALVESENKHSWLWFLCCLKMGVIKDREGVCIISDRNTGLLSALEIIKASQDPDWGWPDLETRW
CMRHLAANFYSKFKNKDWFKLFKRMCMQKTTAKMNAIWAGINGQIERASLPAREDRRGRRTAINLSQWINENCLNLYKWA
QPHDTDARYGIMTSNMSEVYNGVLKGVRALPITALIDETWNRTVxYFADRVTVAKALVDLNKTWSEKMQRHLDDKANKSQ
RHGCRQVDALRNKWEVSVRAKFVKGHHRGAKKQAVTLGATSYECTCNKPKLLGYPCSHVLRAAADQQISVEPYVSPYFNM
HNLYNTWNGEFWAWDIDTNYKQLWPEGTTWVPDPALMRTSKGRRQSRRRNDMDHSQLGEPRRCRICRCAGHPRRECPYRN
NNTA
>MuDR7x_AP#DNA/MuLE-MuDR 424-1804 via tfasty with MuDR1x_AP, 1 frameshift. [Acyrthosiphon pisum]
MSALLITSKREKPQIVIDNFKFSKAYEGVNKIRWRCINKVCDAKVLQKKNFDNEVLYTENEHHHEAVNENTINRQIVNTS
CKRKAIEDVSTRPKKIILQELVHNECAKEITVNDINRIRKNMYEKRRKTLPANPKSISEVHQALNVLNIETKQKENFLLL
NNEKENIIIFSCSTNLKFLTSVDTVYMDGTFDYCTRFFMQMFTIHGFQNGHYVPLIFCLLPNKLTSSYIFALRSICEKCK
DMNLIFLPANVTIDYEKAIINAATEVWPESNIIGCRFHLTNSWWKKIQSLGLSMEYKEKNSEIGKWLRHTFGLLFLDAQE
VSDCFSYDFMSDRPVNELLTKYSDYLVDNYIGDDCSYPPSLWASLSASLTRTTNACESFHAVFKDHFYKRTPHIIPWITV
LIENIQTNVYVTLKSINECKTPRKNMNDKRKRNEELISKYQRDEISRYEFVKLISNHYAK
>MuDR-1_TV#DNA/MuLE-MuDR 2220-4469 [Trichomonas vaginalis]
MGKSSIFNQKRANFTDENKIFIREQSDKYQKSTSRDEKTNIIKQVLQYFNIKYAENESKAVRRYFSYIAVKNIPAITGKY
PDTIVRKDMLYLHDHTNIINSNNIERYYRCIDHSCQARYLVKIENSSVSEDLQKEHIPECRQFKKLQNEKNDLHKSMTLT
EIYNKAMAKFSEDNGTFQQIKKIMTELAVGTDENPLIKDSLVREVYNKSRKFSVGEKITDDEIANFCLINGKQFFIGHDF
QANCETMFFGFEKAIQFAKEATDLFCDGTFKITPKHFQKGQMLTIMICEPSTNQYLPLLFIFMKNRTFESYKKAFEYIFT
VKGIQFSKLIQIHCDFEKGMIEALQQIFPKVRIIGCLFHFKQALHRKLVALYTKNFNTLQNSLFKLYSITPFMSHEEFVL
TMHIINQNKVDSIKDYIDYFNKVWLPHYNLISQYNNATAIFTNDCLESMHSEFSSLKHPNIYEAIKKISQIQLYKYNAIK
NNQKIERHIKTVITDSYKNYILDCFQKELEKTIFSIKQYNVSDLSLAQNEISPYGSIESSSLFENIPVHDADILKSIDLT
NKDTMITKFINEKREKIMALFNETLNHPDFNSSTPIQTNFEQADTNQGSDAPIRSENSNIADSTDLEPENQNHPSTNQMS
SNLEHKLDLLDHIEKQLSKMRSLLGILPTTNAIVGPSKQVSVNSKQNSEKNKKKSSITTKSNNKKQNSSDNPPKRKAPIS
ERILSDNNLYFQVHRKRSKSKRSTSTEKKN
>MuDR11x_AP#DNA/MuLE-MuDR 455-1899 via genewise with MuDR1x_SM, 1 intron (627:714), 3 frameshifts [Acyrthosiphon pisum]
MEFITSKRGKKMTVIDEFKFSFSYKSVQTNISRYRCFVKTCTATIYVDQLNQLISITDHICNGPCSNIDRQKVTTACKRK
AVNDISERPQKIILNEIQSNNSVSTFTVNYVSAIRQCIYRARKHSFPXNPSSLNELXSAIDNTDTSTTNAEEFLLINDQE
TNIIIFSCETNLIFLCESHTIFVDGTFEYFPKYFTQLFTIHGMKNNFYVPLVFCLLKNKNSETYTQAFKYIQNKCYEKNL
TFDPKNVTDDFEISIHNAILSIWPSTNLIGCRFHLRQAWYRKIQELGLSTEYKENGWLRTAFGLTFLDPQEVSESFVEDF
MSIIPEEXYYKYADYLTDNYISEKNVFPPTIWSNFSASISRTTNNCESFHAHFNEQFYKSHPNINTFLKILISNVQNNVY
IQINSCNVGMQKPVRCNIKKRLISTTNAIDEYKNKTISRMTFLKKVCNNYSK
>MS103_Msp#DNA/MuLE-MuDR MS103 gi|14518308|ref|NP_116791.1| MS103, putative transposase [Microscilla sp. PRE1]
MNQQEKQQLKQKALKQFFNGESLFGKDGAFAPMLKEFLEEALEAEMEGHLSSDQKGRPMGNKRNGKGQKTVKSSHGEVQI
QTPQDRHSNFEPQIIEKRQRILADNLEKQIIAMYGLGNSLRDIQDHIKEMYDTDISTEVLSDITDRVVPKVKEWQNRPLE
PVYCIVWLDAMHFKVRDEGKVKHKALYNILGINKHGEKEVLGMYISESEGANFWLQVLTQLQNRGLKDILIACTDNLTGF
SEAIHSIYPQTDIQLCIVHQIRNSLKYVASKEQKVFMKDLKPIYQADTRDQPGKPALLELEEKWGKKYPVVIRSWNDNWE
LLSTYFDYSRPIRKLIYTTNPVEGFHRQVRKVTKSKGAFTSDMALLKLVYLVTRRIEKKWTSPLQNWGLTVQQLAIRFEG
RLELDLRTSETKN
>ATMU11_tp#DNA/MuLE-MuDR 2 introns (at least 1 intron in RepBase is false) (ATMU9 similar with too many stopcodons) [Arabidopsis]
MTRRESKRKRPDEKEKRDVDPVREKNTESEAVSGDDCEVCGDEDCDDIRYDDEEDDRDEVNETEHRNRLGVDEQVCEDFV
AEFGEAARDDEDVSDADSGDEIWDDERIPDPLSDSDNDEDLVDGVARTEPEDLEELLKLGKTFSCPEDFKIAVLRYSLKT
RYDIKLYRSQTLKIGAKCLDTDVKCQWRCYCSYDRKKHKMQIKVYESKHICVRSGYFKMLKRRTIAWLFSDRLRKNPKIT
KHEMVDEIKREYNLVVSDEQCSKAKTKIMKERRAVHEDHFSRIWDYQAEVLRTNPGTKFEIETIPGQTIGSLQRFYRLFI
CFNSQRDSWKQTCRPIIGVDGAFLNWDVKGHLLAATGRDGDNRLVPIAWAVVEIENDDNWDWFIRMLTTTLDLQDGSNVA
IISDKQAGLVKAIHSILPNVEHRQCARHIMDNWKRNSHDMELQRMFWKIARSYTEGEYAANMEALXKYNPGAFSSLLRTH
PMTWSRAFFRIGSCCNDNLNNLSESFKRTIRQARKKPLLDLLEDIRRQCMVRNEKRYVLAGRLKTRFTKRAHFEIEKMVE
GSQFCIRWMARNNKHEISLNNVIYSVDMNDNTCGCRKWQMTGIPCVHAASVIIGKKQKVEDYVVDWYTTQRWQQTYKDGI
APVQGKILWPRVNRFGVLPPPWRRGNPGRPNNYARRKGRNEAASSSITTLSRLHRVMTCSNCKQEGHNKKGCKNQWVEGQ
PKRPRGRPKKASEPRNILFGQGLSHAFSGSQDQASQRSQSSQTSHVSQRVPHGEGQGQGQGQYTY
>51854381_Osa#DNA/MuLE-MuDR gi|51854381|gb|AAU10761.1| unknown protein [Oryza sativa]
MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPS
LDWTEGNPYEKEGAGIPMERMVVDNVDSSAVIPPEYADPQILTPMLGQRFKTERDAYNFYNVYAVSKGFGIRLDKDRMNT
KKQRTMRQICCSHQGRNPKTKKPSVRIGCPAMMKINMSGAGSGWSVTKVVSAHNHPMKKSVGVTKNYQSHNQIDEGTRGI
IEEMVDSSMSLTNMYGMLSGMHGGPSMVPFTRKAMDRVAYAIRRDESSDDMQKTLDVLKDLQKRSKNFFYSIQVDEACRV
KNIFWSHAVSRLNFEHFGDVITFDTTYKTNKYNMPFAPFVGVNNHFQSTFFGCALLREETEESFTWLFNTFKECMNGKVP
IGILTDNCPSMAAAIRTVFPNTIHRVCKWHVLKKAKEFMGNIYSKRHTFKKAFHKVLCWDDYYTENSMNGFVKRYDRFFN
EKLQKEDSEEFQTSNDKVEIKTRSPIEIHASQVYTRAVFQLFSEELIDSLSYMVKPGEDESTVQVVRMNSQESFLRKEYQ
VSCDLEREEFSCVCKMFEHKGILCSHILRVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDVDASQSRSYRHVML
NRKTVEVAKIANKDVQTFKMAMTVMNKLLEDMKNQLSLDDGDNSREAPKRAARHKSRSTVLTEDGNEDVGGGDEDSEYDV
PSEDEGGNLTADILPPLKKRSRGRPKVNRYKSGGEVASLKRRKEVGIEKKNTTNECESVEEENQVIDHEDEVPFPRRFCH
TCHEAGHNSRTCGRTSTYKRKL
>ATMU12#DNA/MuLE-MuDR 452-2885 Via genewise with ATMU11_tp, 1 intron. [Arabidopsis thaliana]
MKNWWEEGLIYQIDPDDPDFEPPESDIEADDGSDSGDSGVEEDEATGVEGDDVGIDGDRESDGEENREDDGDIASDGDIN
LEDDGDRDESQKKRTREEKRKEEEAEEGQKKRRKQKKDEPEEDLAERFEFEIEEAVAMWYDELKIRRNEIPESDNEEEDH
VITRDRKIRLASDDRLAIGRTFFTGFEFKEVVLHYAMKHRINAKQNRWEKDKISFRCAQRKECEWYVYASYSHERQLWVL
KTKCLDHSCTSNGKCKLLKRRVIGRLFMDKLRLQPNFMPLDIQRHIKEQWKLVSTIGQVQDGRLLALKWLKEEYAQQFAH
LRGYVAEILSTNKGSTAIVDTIRDANENDVFNRIYVCFGAMKNAFYFCRPLIGIDGTFLKHAVKGCLLTAIAHDANNQIY
PVAWATVQFENAENWLWFLNQLKHDLELKDGSGYVVISDRGIISAVKNALPNAEHRPCVKHIVENLKKRHGSLDLLKKFV
WNLAWSYSDTQYKANLNEMRAYIMSLYEDVMKEEPNTWCRSWFRIGSYCEDVDNNATESFNATIVKARAKALVPMMETIR
RQAMARISKRKAKIGKWKKKISEYVSEILKEEWELAVKCEVTKGTHEKFEVWFDGNSNAVSLKTEEWDCSCCKWQVTGIP
CEHAYAAINDVGKDVEDFVIPMFYTIAWREQYDTGPDPVRGQMYWPTGLGLITAPLQDPVPPGRKKGEKKNYHRIKGPNE
SPKKKGPQRLKVGKKGVVMHCKSCGEAGHNAAGCKKFPKEKKGRKKKNQEIKVCFCFRLLFG
>IS1354_Mdi#DNA/MuLE-MuDR IS1354 gi|1279560|emb|CAA65720.1| transposase IS1354 (93% similar one in Gordonia westfalica) [Methylobacterium dichloromethanicum]
MNKPTTKPDSSQPATELAVDLFDNWFDPIEAEVRARSRQFIEELIRGELDDALARPRYGRSQMASNEARAGVTGHRHGSR
TRSLTGTFGPIEIAVPRARLTTSEGMTTEWKSQALRAYQRRTLAADALIASSYLAGTNTRRVRRALAALFGGTVGKDTVS
RTWRKVKSDWDAWNSRSLADEPIVRLILDGTVVRVRLDRKATSISLLVVLGVRADGQKVLLAIKSMGGESAEAWRTVLDD
LIKRGLRRPEFLIVDGAPGLDKAIAVVWDGVPVQRCTVHKHRNLIAHAPERLHEEITADYNDMIYATTPEEIAARRKAFI
RKWRLKHRAVADSLEEAGDRLFTFARMPPSQWRSLRTTNAIERLHEEFKRRIKTQTVLPSADTAAMMFWALLASGQISMR
KVDGWQTLATKPIDQPIDLAA
>Cmut2#DNA/MuLE-MuDR Candida gi|46444920|gb|EAL04192.1| hypothetical protein CaO19.12172 [Candida albicans SC5314]
MPPKSLKLIKKGLNPPVQDNKTFNSLFKEALNSPEHFLCDNLSNFKLPSDIDFFIGFIETKQFETWLDIISRQNNWTRNK
RVVSSIANNNNEQIPCNSKKSAYLEELYYNCCSSGKYESKMQKGPGARYKNAVPTTIRTGCPAKWYAKKPKSMPNHWLVG
VIPKHNHKNLLKGGLNRSARLWLKQKVEDGHNHNYIKKLLIDIHAQRNRGTLSDESLPLLNIQTHHILYLLRKKFNKQYK
LNRGGRENLLAWGESIKKHGFFKIMDFPGLSTEGKPLWGCMFMDKKQKNILETNQDVWYLDLTHRVSRDFGKRMKNSSVY
LYTVVARDKVTGMGVPCAFFITNTLKEDPIISFLGFLKSHSVTLKQVMIDCSMPELSAIKTVFPESSVSICKWYILRNVR
TEARSIFNDKESQDYAVAKITALFDNSTNDEIAQKIHEFKEQFADYPKWLNYFKYCENLLRCWTNNAEVSLNQENSTNNC
IESYHHTIKIKFIKSIRQHTPDDLLCVLYKEVTPFYMKWYDDVRIRGRRPNLNKAELGYFDAAYSLSEDDLKKYVTIQKE
GEIQEGETQEEKETQEEKETQEEKGFVKSLKDENVTYTVTIKGARGKCTCNIDRNDSSWCKHLYMYQRLKQLLLGEAIEK
QMNLFADNSEDYPSDVSDSESEDYESFSDIEFDNGNDIGNDNGDDDGHQNEPNNNAGDPYDSNEFDFSRYEVRNEDSQNV
VDVVNPTLLNSLSDDDDDSDDELSSTEMEMPNDQSIQNITPANIPQKSREELINKINGHLRSISKRYSEIIEKSPEKLDE
LELSMKGLIQLLENMLTGRENLANNPKRRKKS
>23013242_Mma#DNA/Merlin gi|23013242|ref|ZP_00053161.1| hypothetical protein Magn03007700 [Magnetospirillum magnetotacticum MS-1]
MERSHIPLSTWFWAAYLVSSQTPGLSAVQFQRQLGLSRYETAFGILHKLRAAMVRPDQDRIGGHPDQHVEVDETWVGGRT
RGEGRGGHHKVLVAAAVEVRHREPGTAQDNRRDGRYAGRVRLAIAADRSAEALGGFVKSAVELGTLVITDDWSGYGGLRK
DGYDHHAIAQCGDPEVPEEFLPIVRLVFSNLKSWINGIHHGVSAKHLQAYLNEFTFRFNRRFYPFNAFRSLLGIAGDATA
PTKTELYSGEWRHPKCSGYGR
>Polinton-N1_NV_atp#DNA/Maverick 5585-6187 [Nematostella vectensis]
MDPKNIPFNALIVGPTSCGKTQFVVDRLRGPFRGKFDYIVLMCPTFVYNKTYDGFGEGDNRLFVIAPEAGQIDILLRFVS
ALFEGTNTLIILDDCAASKDVKRRSDQLVNLAFSARHVGISVWVITQQLTSITKPFRENIAALVVFYTPSKADMKAILHD
YGAELSEEKMKEYMKALKTKKFSKLEFCLRHPYTIALVER
>33148872_Hdu#DNA/Merlin gi|33148872|gb|AAP96390.1| conserved possible transposase [Haemophilus ducreyi 35000HP]
MAQHFLLTQKAKTLSAFEIANISEAEAFDLLCEARWGSKENVVCSKCGVQHKAYFISIRKQWRCKHCHHTFSVTSGTIFA
NHKLPLKTYLYILIRFVNAVKGVSALEISRDAKINYRTAFVLCHKLRKALLESRDMQPLSGEVDMGGTYIHPAPRKANKK
ADRIDYRLKENQNPNKRCVVVAREHFSADEKAENSLYRGAKRSHVFVTYSETQSVVKNFAHAYIEKNSRINTDENTAYES
LLLDYDLRTVNHKDEYRSDFGVTNNQAESFFSRFKRMYYGHVHKMSNTYLLNYANEIAYREDNRRKPNGWQFHDILGKCL
ETTNEQNEWCGYWQRKIFHQEVIWQ
>46578998_Dvu#DNA/Merlin gi|46578998|ref|YP_009806.1| transposase, putative [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
MSAAWRREHPLPAPCRMRYTCGMNPTEIVQASSSEEAARKLLLDICWAGGRRFCPRCGGDRLYGLSGGRHRCAGCKYTFQ
DFAGRWINNGGLPADAWLRLVTLFAAEATAHQMAGELGLSYNATYKAVTTLRFAILAHAPDARQLLGPETGLGAYLKGRK
LTGLPSSHGRGPVPVFGILERNGWVFIDLVSGLSAETVFHFNHSFHLRIERAGYLVHTAPYRQYDALVLSGDDSLPYEYI
RKVETPPSQRREGVFTRYAVERIKAFKGVSPQRFPLYLKELEFRYNHRGEALEPLLLRYLCDMVPDMEFRHP
>39591585_Cbr#DNA/Merlin gi|39591585|emb|CAE71161.1| Hypothetical protein CBG18017  [Caenorhabditis briggsae]
MIMFMFMLLMLLSSTSAHKGRPQRHTIVQPSELRPVEAIANLPELTSRNIADFIGNIDGTEESDEAALRFLATYGLVPNE
RECPECLNGKMSLVKDNALPLHFVWRCSSCKTSNIITKKMIRENTFFQEQKLSVQKIVHIAADWVESPGRNNERTASLHG
VTTSTIVNLNKLFRQLTEQWFERQIEKNSNFLLGGPGKIVEIDESHMYKAKYNRGHMLRRKSIWIFGMTERHTNKVAMFR
VKQRDAATLLPIIRAHVKPGSMIVSDGWAAYGGIRTLQRAFTHRWVNHKVNFVDPSDRRVHTQSIEATWGAFKRELKAKY
GVPEDQLDGYMSTYMFRRYFGRKKLLNHLLIEMKYYKKEDDSPAEGSSKDADKIILLQPIFFFFVF
>Polinton-7_NVi_px#DNA/Maverick 8134-7232 R [Nasonia vitripennis]
KKYTLLKQEKDDFEKVIGDTLKPVITPLEKLVEMKSESPLQQPSNHILDKNSSKKMKKRIRIDRSSLLNDQNNNKTSLLD
YTVYDYDDDDDDDAFDTITNSTFRSASGKNESAEDFLSLLDKSRRTIDNIYGVRKVDGVYMIGDSEIEFDDKYVKVRNES
YPKTNGLMELLFKKYPDDLLLSSADRENYRKILEATNAHRKKFSKDESIRMSRSNKYKNILAPMFRSTPRKKNNSSGGGL
IPKYKIAKKNSSIDLVYWDDPNELIERLRLLIAERSAGNNNHTNEIQSIIEELREAGHIY
>Polinton-4_NV_pro#DNA/Maverick 3165-3773 [Nematostella vectensis]
MSRYTNVRVNISQGQIDKIKRAIQAAVPVSIRLSHSDLSGEHVLALTAAQVNRIAKAYQSGTGVTIKMSKTQLEHNAKVE
GGFIGALLPMLATAGRFLLSSVLPTLATGVLSGVGQAAGSTVVNKIAGNGIGGGIVYLKKNGMGCKIRAAGEGLYLSPWQ
KGSSLGEGMYLKSGAGYAVAGSGLLLGPNSPFQNIPILGMIL
>Polinton-4_NV_int#DNA/Maverick 1-1496 R via tfasty with Polinton-1_NV_int, 1 frameshift and 1 stopcodon. [Nematostella vectensis]
MYCVKCRNKTDTNNLQNVVSKNRRSMLRGTCAVCGTTKTQFMPSKKSGGDLVSSLNSITSNIKLPWAKYPGEMHLPGMNF
AGPGTRLDLRLNPNGTPTESSKPVDRVDDAAYRHDMAYAAFPDTKTRNVADRVMVSELNEIPNPTLRERVERAVIKPILS
TKANFGLGLPSSKNSKRSKKARLKTxLCRPPKALKWSDQLADELHKPVIRHFRKRRVIVRGIDEIWAADLVDMQAFAEYN
DGIKYLLCVIDLFSKYGWIVPLKDKSGKSVAVAFKRIFVEGRKPEKLWVDKGKEFYNKDVKALGVELYSTENEEKSCMVE
RWNRTMKEKMFKYFSANSTRRYVDVLGEMVNRYNNTKHSSIKMTPVAASDKKNESAVFMNLYRKFASLETFERSSPKFSV
GDKVRITKKKKTFEHGYTPRWTEEIFTVSRIQYTDPITYKITDVNGEDIQGTFYEQELQKTTQEIFRIEKIIRKRGNKYL
VKWLGYPDSFNTWVDAESL
>Polinton-4_NVi_pro#DNA/Maverick 6707-7393 [Nasonia vitripennis]
MEDSLTLSLSGTSAVLEAQYFPPLELSANKSYVLGLVELLTFNSIPNIDTGNNKFYVGGEVIILPTGSYEIEDIEKSLKE
ALTPKGITLKLKPNNNTLRCMIKCNRSIDFQPDDSIGKLLGFTSRVLSPNTDYESDLPVTILKINALRVECNITSGAYIN
EHKVHTIHEFFPAVSPGYKIIEVPSPIIYLPVTVKTINNLQLHIVDQDGHLVNFRGEVITIRLHIKSV
>Polinton-5_NVi_pz#DNA/Maverick 10116-10910 [Nasonia vitripennis]
MDRARKMIIVPEDMFSRMQNVQPAAAAPPVVNESCENSVQTCGDNLSRLDSEMHTILHSNKFTDEREKCQNYLQVLRRYL
FFKDSERHAEHDYERDVDEIEATSAPMTEEIILDSVPKSYAQKTRLLLKHWKTVAGDRLKWDSTGRVSIDGRPIQDSNII
ELISDVVARRKKTLDQSEVPIGRLPFAKFIKTVDTPIKLIGNPEIVKIGKNLTEPNNTAKRRLPSKESIDALMEIHNASS
SESPASPALTRNRAKNKWLRLANF
>Polinton-4_SP_atp#DNA/Maverick 8153-7515 [Strongylocentrotus purpuratus]
MDVRLRHPFTMCVVGPTFSGKTVFVRKLLKLIPSMFDQTPQRIVWFYGEFQKEYSTMMNTIPNIEFHENLPEDFYEFTDN
AKPTLFIIDDLMDVAGDSKKVAALFTKGCHHRNASVIYISQNLFHKGKESRAISLNTQYYCLFKNCRDKMQISCLAKQMY
PGRVKYFQEAYTDATKGKYGYLFIDLKPDTPENFRLRTNIFPGETQFTYIPKV
>52548231_Sma#DNA/Merlin gi|52548231|gb|AAU82103.1| hypothetical transposase [Schistosoma mansoni]
TLAAAFADVSEVSAVQWYEFCRDICATKLTSIHQLYGGVGKIVEIDETVVRKRKYNRGRCIKEDWVSTSSINIPHRSLEY
TIDHDRKDIFKESGTGRHQQSYRLYSNMCCRALLFIQMIGELTDV
>Merlin2_SM#DNA/Merlin 170-1060 [Schmidtea mediterranea]
MFHLLFERIKLNLAIQPEEIIRFLQELNVFQKNVICDLCNKQMSFISVNSLVDKFAFQCSDCKSRHSIRKGSSFYNSKLS
IQEILAALIGFVRNESIKKIAKTLHLSERCLVKWYSIFRACITMHLENNFQQLGGVGRVVEIDESVVGRRKYNVGRSRDQ
QWLFGCIDRSTSKILIKCVDSRTKRELGALIKDVIADNTLVMSDEWPAYMSFFSENTSNYSHLAVKHKENFVDPDSGAHT
QNIECVWRRLKDMLRAKNYVRRSKLSSYVDEFCFREKFKFFENHEYLMFIEIIKLM
>Merlin1_HS#DNA/Merlin (153-1073 [Primates]
MDRRLFQDTLQPIIVNASNLPATDFLKQRNLLSVAPECSSCHQPLRWMVRCQCKDGYSWKCVRRNCQSSWVSLRKGIFFA
KSNISLKTWLHLLFLWSMEVTEKAATAVTGISAHTMVDIYNFCRKVCKHYFELHLIQLGGPGHYLQIDESCFSHKIKYHH
GRALEREIWVFGVVDTTHQPAIGYLEIVGDRSAQTLLPILQCIVQPGSTIHSDSWAAYNNIQPLLGFQHAQVNHNDPNFR
FMSPLGVHTQNIESYWNKCKAKCKTMRGVRRDMLDSYLAEFMWRDRFGNNAFNSLLLHISEQFPVN
>MuDRF-1_NGr#DNA/MuLE-F 274-2304 [Naegleria gruberi]
MSSRSHRFTINNVFKDSTPSIEVNEESKFDKLSFPSVGTLYHSSTISDPFKSLIQYNIKLNGEKPREIDGKVYQFQSGKC
KGCKQCTASGCSLCYNLNSKRKLCPVHNCNLEHRKCNTKFYIGSTSQDQFVYSSSCHSHPNPPPRKIPPSQRLEMGAAFQ
NNTTLTAKDVSLGIGLSEIPAFENRACANISRIQSIKRQALKLGGSSPSLVILKVEEQHVPDFQKKMKDVDPSDLQWVRN
IVNDVDNSLIHTQFPLFSKIIKEKANFLVIDLKHKSKAGPYYHHLGFSSFIEEQKGGHSIQLCRILMEEQTYQEPFLLFL
NTLEKDGCNLNELFVGPNCKIKGILVDFSQFQLKGLKDAFRVKFGEKGDSIIDELVSGCFVHFLRSARRLVNSLPIEQEY
RNLVFKMLESVKEFKKEDEIIHIINAIEVFCAGAATWCTWWKQPHILKLLLAKSSQENDIPRHTNHQEILNVNVPTYGGN
YVIESEMLLREDMLALIRYLSLCSGVELSYRNTTKQGREKRNLSRKQAQFDSRPADTVARGIVPTNVSTISVIKNFVQGV
EEMERKKLDDFAGEQADDLNDKDFTPTGSVEPAKQKRTPRTPKKGVKRAAKPSPSQTKKKSKVIEDEYSSSSSDGFESAA
SNSITDESESESDSIRDTEIFTRSKGLIGDPNRSESA
>13358810_Cti#DNA/MuLE-MuDR gi|13358810|dbj|BAB33151.1| hypothetical protein [Carthamus tinctorius]
MLMLIKQKMGTFFCPKMKITFLKLWRRMMRDVSSTSLMLMNQYDRSGDVFPTVEAAEKMYRKYASAAGFDVRLSNKKTNK
FGITIARFFVCNKEGHPTPKLYDSLNKKSGERRRRNSNLKRAGCMACMKVHYVKSIGRYEVYKFNEKHSHMLFSGDEMSL
SRSNRELTFGDQCNVFNACVTKVGVSKSHRLRNISKGNVGLSGGTVRDYQNFKKDMVTFVGNKDAKMLINTMVNRQKISP
QFFFEFKCNEKELLAIFWADEVARMNYREFGDAISFDATYRTQKHAMIFVPFVAVDNHKKSVVVGAALIRKENADYFTWV
LNAFVKAHGSLPKLVITDQCPAMKQAISIAFPNTIHRLCLWHITKNVKKQVSVHLVKKTSFVADWNKMIWNLHLGPAEFD
NKWEEFLDLYGLTGVSWFNHMYEIRESWIPAFFKDTPMSGLMKTTSRSESINASSVYTRKVFFEVQKELIKAVWCCGWDE
ITRADGKHVYVVTHKNKSSEVITKYTVVQDKTSMTVDCSCNLFVRNGILCRHALKVLLNDGVDRIPDKYILRRWRRDLIP
PQWLPARVRYGEVDVEKERLMARAFAAVDRMIGRVRNEKDVLERVVEKLENMDEELDEVVPLKSSRERKKEAIREFVGVP
ESDDNDVLPPSGIRNKGCGRGKRLKGVRERVDEEAKKPKRLCRTCNDFVRHDSRNCPMR
>6175165_Ath#DNA/MuLE-MuDR gi|6175165|gb|AAF04891.1|AC011437_6 Mutator-like transposase  [Arabidopsis thaliana]
MANRDLMLGQNRNIGIGQGQSLVLGHSHSLGLGQNHVDVELGQGHNMDLGLAHHDHDHHEIDLGNPHDDHELDLGNSEDQ
DGEDHHHHHHHDYMNENEISVDQKPGHDDVDPDLVLSSQNHEFSLSDNNHQLVVGENHELDDNLELAVDSSHELEIDQHG
EMVMVSTPVQARALTADMTYQLTVGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGV
PTFTIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGITLSYKQAWRGKERIMATMRGS
FEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNCFQRLFISFQASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDG
DGALFPLAFGIVDEENDENWMWFLCELHNLLETNTENMPRLTILSDRQKGIVEGVEQNFPTAFHGFCMRHLSESFRKEFN
NTLLVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGQRFGHLTANIVESLNSWIAEASGLPII
QMMECIRRQLMTWFNERRETSMQWTSILVPTAERRVAEALELARTYQVLRANEAEFEVISHEGNNIVDIRNRCCLCRGWQ
LYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSHWRELSEGDPNVNKAALDAIINPPKSLRPPGR
PRKRRVRAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI
>Merlin1_CI#DNA/Merlin 518-1432 Via genewise with Merlin1_HS, 1 intron (897:989) [Ciona intestinalis] 
MQKDFEGENSESLPCIRCKSCGTYVSPRKNSFFAFMDNRNRANVKISYKQVMAILINWVQRVPVGTTQQNYGFGAHTVTD
WYNFCREMCMLGFSKREPMGGPNTIVEIDESLLRGKRKYNRGRLLRGPWIFGMCHVTVDSEGARSTQEVRFFHVLRRDKQ
TLLPIIQNEVLPSTTIHSDQWAAYTGLDQLGYSHQSVNHSENFIDPQTGAHTQTIESTWHHMKTTLLRNMRGVEPELLDS
YLAELWARKLYRDHAALLEKLFDWIVEAYPIRNI
>55235819_Aga#DNA/Merlin gi|55235819|gb|EAL39137.1| ENSANGP00000025571 [Anopheles gambiae str. PEST]
FFAGSKLSLQKIMMLIYFWSMEIGVDRAAIEADVNRKTVMSFYRKIRSELMYLDQYTGSMIGGPGKTVEIDETKLVKRKY
NRGRINPSNEEWLVGGICRETKDIFLCRVAKRTAPILGNLIRSNVAAGTRILTDCWRGYNQLDQVGYLHATVNHTTHFIN
PDDDTVHTQTVENLWRWLKHFLKK
>55234192_Aga#DNA/Merlin gi|55234192|gb|EAA00959.3| ENSANGP00000004146 [Anopheles gambiae str. PEST]
MSKTKMAPVAGVTLHLECWRDELSPAQTAAYEKAEKEHHEVRNKLKEIVQETGGKNIFAGQVFTAYQVLGPVPGLEQISK
PVTALSRKKMPSMPPALAPLGSSSSPEPSASFRRRSRKADSPAGENPEPVVDIASDDPDEDYIPLAKRMKQKAKEKTTPV
PAKKTREEKVKTPDPKIKSPKTPGLTPKVAAISVRPTEFNSIGGLQVGAEKDKKRSAAEPSAVVDLTKDDSGKPTADSRE
ISFSKIQGKTFPSLVVLARPSLRVVDKAVTDRPQLDAKVKNVLVHPAPKFTEWLIQQGLIKSEQTCQIHNDKPLKLGMYS
DTSKFPYSGGYFWISDCCPTRFTSVFHGSLFEGSPHPPSVILKLIYHWACQTNVSNVVNWVKVDNMYLKGLYTLLRSVCT
LALCRHMKLLGGPKKSIEIGVISLGTTTQDGQQRQVKVEVLGVLDPEAKILRLRAVEPLLDAEKSYKKRFSKILEPLSDW
VHKDSVILTDLTVDKGTLNSMGYKTVIQ
>56756623_Sja#DNA/Merlin gi|56756623|gb|AAW26484.1| unknown [Schistosoma japonicum]
MYILPGSIIYTDDLRAYRPICRLDYVLHVVVHEIRFVDPSTGVHTQNIEGYWSRLKEILRSYKGLRKDMLRSHVDEFLCR
SYYEFKLNEPVDNLQKSQNMKIFYPGVMF
>ISSpo8_Spo#DNA/Merlin gi|56677131|gb|AAV93797.1| ISSpo8, transposase [Silicibacter pomeroyi DSS-3]
METSMITELKSVRDIWKKMPSERHARIFLEEMIWPSGRHCPHCGSLSSTPIRGRTARPGLYQCAERECCLQFTVTTKTPM
HATKLDLRIWIAAIFLMLTSSKGISSVVMARILGVNQKTAWKLGHAIRELMDEREAVSARLAGVVEVDEAYVGGAPKFKK
GVKNKRGRGTGKPMVLVAADRTGQAKATLIPNAKGATLGPIMKEWIDPSSALMTDSNTAYRKIGRSFASHHTVNHGKRQH
SRPSKGAHINTVEAVNSQVQRALIGVYHRLGRQHLQRYLDEILWQWNHRQQEVKIRNRKTSSGTKTIATRVWKPIPVVDQ
MRGLLCCAVGRQLRRTPQWGLCWPIHLFEHKGTFA
>IS1016_Ngo#DNA/Merlin gi|59801615|ref|YP_208327.1| putative insertion element IS1016 transposase [Neisseria gonorrhoeae FA 1090]
MKITHCKLKKEVQKEPLRSFVPEVTARSAADILGIHPDSAALFYRKIRTVTNHRLALAADEVFGGPAGPGGSYFGGRRKG
RRGRGAAGKAVVFGIPKRNGRAYTVAADNAEPETLLPAVKKKIMPDGIVYADSPGSRGKLDAGGFTRCRINRSKEFADRR
NHINGIGNFWNQAKRALRKYNGIDRKPFPPLLRECEFRFNFGTPSRQLKILRDWCGI
>I_Ele36_pol#LINE/I 1800-6725  [Aedes aegypti]
MDQDSLTNNTVYNDENSATNMAVNMETQQDPPPNDIFDRNSTMNNYYDNYNNVLNEELESSAITDPISVNRSRRPRHTML
TPLRNVSRDNRPDYLREVVNVACQNMQASTSSNYQANPCCRLPSTFPDASRSIPEIDLHNRSKSQNPTEYFDVRIXNPVL
FHCDAPLHDNVDDEEMQHPGISYQMPQVNERSCRPRYTMLTPLRNVSRDNRPDYLREVVNVACLNMQASTSRNYQSNPCC
RLPSTFPDASSSIPEIDLHNRRINPALSHDDASSHDNVDNEEMQPRSINFNNSENFSCIGPFSSDDTTNSDQRCIINNRS
YGPRHTMLTPLRNVSRDISPDYLREVVNVAGLNMQASTSFNHRSNPCCRVSSNFPDTPSSTDIGLHLQNTVEMDFQQAQN
NDFVPVLDTVSPSEPPTNNRRDLSSSSHANSSSTNNQTRCPRIAVQWNINGLYNNLTDLQILTQCNPPLILALQELHRHT
PSALNNLLRGEYNWLSKCGSTRYQNVALAIHRSVAYDTINLNTSLTAVAATVYVPFRLTVVSIYLQHSGIENLESSLIHL
IDQLEGPLLIMGDMNSHHYAWGSKKTDRRGEAILRVAEDKNLIVMNDGTPTFIRGDQQSAIDVTMASTSILEKLRWKVHC
DSMGSDHFPIEIYSSDAQIHTKRRPRWKFDEANWDGFEEAVLSCMEPAKQYSIEDLTDIILLAAKSNIPRTGQFPGKRSV
HWWNAETKAAVKVRRKALRAFKRLPVDHPNKQQAMENLRIQRSNCRRIVKEAKIKSWEEFLNGINSTHTTTEIWRRVNAI
SGKRRTNGLCIRNDGEVTRDPVKVANTLAKYFEELSSRAAYSDSFASKNPATALSNVTIPEDPEESEYNRLFCIEELYYA
LEASNGKSCGLDEVGYPMIKRLPYRTKIALLDAINKVWTTGTIPEPWSRSLVVPIPKNSAASTDAKNYRPISLTSCVCKI
MERMVNRRLTTYLTENQKLDNRQXAFQRGRGTGTYHAVLGQVLDDALKANLHVDFAALDLSKAYNRVWTPGVLQQLIKWG
ITGNMAKFIKGFLSNRTFQVIVGNDKSEVMKEETGVPQGSVLAVSLFLVAMNSVFDRLPKGIFVFVYADDVLLVAVGAHP
RALRRKLLAGVRSVAKWADNVGFRMAPEKCAITHCCNHPHHPWRLPLTVGNMDIPYKKVLRVLGVTIDRKLTFSVHFASI
KKESENRMRLIRAISSRHQTSNRRTILQISNALITSRLLYGIEITCRASEVLINTLAPTYNRFVRFASGLLPSSPTLASX
NEAGVLPFEFIVAKSVADRAINFIEKTYGGNEEVFLLTEAENLLQKYANETLPPIAGLHRVGDRRWDTTAPRIDWEMKQH
VRAKDPPWKVSSYFNALLQRKYKNHKHIYTDGSRANGEVGIGVYSRSSKVAARLPNCCSIFSAEAAAILLALRNVREEPV
VIFTDSASVLSALDSGKSSHPWVQEIEERTTAATTLCWVPGHCGVHGNEEADHLASTGRTMNQRIMPSPGVDIKRKLKEH
LILAWTRKWHTERNLFLRKIRDSTEKWNDRLNQKEQRIISRLRVGHTRLTHPHYFSNEQQPRCEICSVRLTVEHILAQCP
QYQPGRDALELKYSIRDILSNDREEEEKLLLFLKQIGLYDKI
>I_Ele13_pol#LINE/I 2065-6567  [Aedes aegypti]
TIIFSTQKKPVKKKNRELTEPTSPLSTTNTTRTRRAAVKAPDSRGPVSADITPQPELADNLRHPRVILAYGTHKGIQTRS
PFSPDTSQDRKAPGGVTGRGTHKSSNTCTPEDSEGTQFNDGHQNRHFHVYSPLHNVEVKPVLRRYDLRTRIKPPRNRLDT
PSSSKVFITSRLPPLGPEVCNADLYDQLHRVRFGASASIKAGPSNLSCVSASRKKFKNVNPLDPPSDSTGTSNTATVSQS
RFTCSGSVSRSAIVSEKSDCSSPPPENSEPERASGVTSSDCNHLRKTSNIGNSEQHTWILQWNMNGFYNNLPDLQKIVVD
KDPSIIALQEIHKATTESMDNTLGRKYKWITKINRNIYHSVGIGIAAELPFSNITLDTNLPIIAVRLSWPFPVTVVSAYI
PNQNIPDLENQVKQLIGKLPEPIILLGDSNAHHQAWGSRHTDARGAILLEIAGQNGLTILNDGSPTFMRGQHESAIDISL
ASMTIMNRISWSAECDPMGSDHVPITILLNTTPPNTSRRPRWIYDKADWSGFQSSINSSFKNSEPKSITEFTEAIHEAAK
TNIPKTSPNPGRRALRWWSEDIKKAVKARRKALRAAKRLPAEHPDKEKAVLKLRTARNECRQIVREAKERSWAEFLDSIN
DSQSSAELWGKVNAIQGKKTKNGIALKIKNQTVRDPAIIADALADHFFNLSSLQRYPEAFLKRHSGAKTAIADFVIPSGT
DESYNQTFSIQELQFVLQKCCGKSSGPDEIGYHMIKNLPMHCKAILLEMINKEWTSRTFPESWRHSLIVPIPKSTGPSSD
PRNYRPIALTSCMSKIMERMVNRRLMEYLDINGKLDYRQHAFRSGLGTGTYFATLGQTLDDAISCGEHIEMASLDLAKAY
NRAWTPSVLEKLAQWGVTGNLLAFLKNFLTNRTFQVIIGNHRSKPVAEETGVPQGSVIAVTLFLVAMNGVFDVLPKGIFI
YVYADDILLVVTGKHPKAIRRKLQAAVNAVVKWTDLVGFDISPEKCVRMHICAQKHRPPQKPITVKGKPIPTKKFAKILG
VTFDRNLSFRPHFEAIKKSCANRMNLLKILSNKRTRSDRRSRLRIADAIICSRLLYGVDITCRASDELVSILSPTYHNAI
RTISGLLPSTPAKAACVEAGVMPFIYKVATTIGTKAVSFLERTKGDGSPAFLATEADRILNSVAGVTLPSVAELHRIGPR
SWRASEPLVDNFIKNRLKKGSNPTIAKSLFNERITTKYANTEIMYTDGSKLSNKVGIGIAGKHIEDHFSLPDSVSVFSAE
AAAIMQAVSHRSTKPKLIVTDSASCILSIRSQTSRHPWIQVTQSLLETRGTPKVSFMWVPGHCDIPGNESADRLADLGRT
SRRLTSEIPGADVKSWLKTAVKHAWSKDWWSDRTLFIRKIKGITTPWKDRIDRKEQIILSRLRTGHTKVSHNMGGGRNFR
IICDNCGTANTVEHMLCVCPALESYRTQYNLGGIDTILSNDLAMETALIHFLKDTRLFTAI
>I_Ele37_pol#LINE/I 2217-6212  [Aedes aegypti]
MPRRYPLRTRRKPLRLRYPIRETKIPKYFPPLGEEVSNAQRYDVLHKTRYGPSASIIPGTSRLTHKKTNAPSLLPAADPG
WNSFPDETVCYTQITEHAPLQVSDCCSRDALEGHSSRISSGSSSHSRTVLAIQWNINGFFNNLADLELLVNNMKPVVLAL
QEIHKASVSSMNNKLRKGYNWIAKSGNNIYHSVALGISSELKFTEIPLDTDLPIVAARLDWPFSASVVSFYLPNGNIPNL
ENQLRNVIQSIPTPIIMLGDCNGHHQAWGSHDSNARGSLVAELASSCELSILNDGSPTFIRGLAETAIDISLISTGILNR
IHWTAGTDPLGSDHVPITLYLDTATPETSRRPRWLYEKANWAEFQSSFEAAIENSKPNSINELTDLIIEVATATIPKTSS
TPGRRALPWWSDEVKAVVKARRKALRAFKRLPSSHPEKEAASQRYRETRNQCRQTIRESKEKSWSEFLNGINEHQSTTEL
WSRVNRIHGKRRVKGMALKTNGIMTRDPALIVDALADHFYELSSIKRYPETFLKKHPSPDKAIKNFVVPPGMGQCFNLPF
TMTELDFALQKASGKSAGPDEIGYPMLKHLPTEGRIVLLNAINKEWIDGTLPDGWRHGFVVPLPKTCGPANDVKSYRPIV
LTSCTAKLMERMVNRRLVEYLETNRKLDRRQHAFRPGQGTGTYLATLGQVLNDALSRNEHIEIASLDLSKAYNRAWTPGI
LRQLAQWGITGNMLTFIKNFLNERTFQVMVGNSKSKLVAEETGVPQGSVLAVTLFLVAINGVFKVLPKGIYIFVYADDIL
LVVCGKYPKATRRKLQSATNAIGKWADLSGFDIASEKCARLHICSSNHTPPRKPITIHGKPIPTKKTLKILGVTLDRNFC
FKEHFETTKKKCKNRLNLLKVITNRCTKNDRMTRIRVADAIICSRLTYGIEITCRASDRLIQQLAPVYNNAIRTIAGLLP
STPADAAVVESGVLPFRYKITIAICNRAVSFLEHTKDDGSVAFIASEANRILDSVAGVTLPPVVGLHRNGPRSWQANLPK
IDKRLKNHFRKGNNPIEARALFFEQLRSRYSNTEIRYSDGSKAVGKLGIGVCGTGLREHRSLADQCSVFSAEAAALFVAA
SKPSDRPVLIATDSASTLLALESPRTKHPWIQATQVLIDDETKNVTFTWVPSHIGIPGNEDADKLANMGRSSRRLTRKVP
GSDAKLWVKNTVQDAWEREWRTNRLLFIRKVKGTTRIWDDRPDRREQVVLSRLRTGHTRLSHDYTGGLPFRRTCETCAVH
NTVEHIICECPTLEQLRTRYQLGSIRNALNNDKAGETSLICFLKDAGLFSQI
>Loner_Ele2_gag#LINE/I 849-2297 [Aedes aegypti]
MGVDDDGGGTSYPLTESSNVLNQQNTNTSMPNPCVSPQSDVSQMDTNILPSPTSPRLKAYPPDSGGPFVVFFRSKGKRLN
TIQISKDLTKRFSSVVAIDTVGSGKLRVTVSDRKQANEIVACELFTREYQTYLPSHRVEIAGVVTEGSMTCEELMQGCGR
FKNPSLPSVPILECKQLHSVSLVGEKKIYSHSESFCVTFSGSALPNFLVIGKLRLPVRLYVPKVMNCTNCKQLGHTAQYC
CNKPRCASCGERHVDGACSIPPKCVYCNESPPHALENCPTYVRRQQHQRRSLEQRSRRSFAEMLKKAAPSAESQNIYSSL
SLDDQGSDSEVGEGISFVFKGSSRKRVRLQRPTKKPRNLSSSDDPPAMKNTKPVAKVSKLSPPGFKLQEERDFPPLPGKS
KIPNIPKFQTAQPKESSHSEPLGQPQGVPMFTLSGIVDIILNFFNASDPVKNIVKGLLPCVTPLLKQLASRMPLLATIIS
FDG
>I_Ele43_pol#LINE/I 1785-6665  [Aedes aegypti]
LRWSIPAKSLRYRRHPLTSVFDNPTLEQRSEYNDDPRTNTDNETFRFGSRESVVPLPTQVRQAEGVIRDVLPQPVDDEFT
SVADGPNDYTTTLQTQSAPTSSNSIESNNRHTDDTTQSLSPVPAIAGVSGSSRVVVSAMAGTVGQDVPQVSLLNSQPQTG
TAAPAIFSDTHHTTPTAANPNQQRPTSTNRLAINNRPEETTQSLSPVPAVAGVSGISRVVVSAMAGTVGQDVPQVSFRLS
LPQSGTAAPAILSDTHQTPPTTANTNRHQPASTYRLVFNNQPTDDTTQSLSPVPAVAGVSGSNRVVVSAMAGTVGQDVPQ
VSLSKFPSQTVAAAPDYLSGYAASPPSPGEGPSRVHRRNITQSASPVPAVVGIGRTSVMVSTAAGTVGQSVPQASDSLVP
SSSEATALPLSPTTDPPIRRSSTSSSTTRSATDSRSGGCFALQWNIRGLRANISELKLLISDLEPCVVALQETKVNQTVV
PPDFVGRNYTLLLQSTNANYWQHGVGLAIREGIPFERIQVDTSLHLVAARLHAPIQATVVSIYVPPSSAQCQTALDELFD
QLEGPILLLGDFNAHHIAWGSHQSSALGRFIAETTLTKQMVILNDGSATRIDPASGNTSAIDVTICTESLARRFTWRTLT
DTHGSDHFPIAVSIPGWSNQQTTRRKWLYDRADWELYERITAETIRPEVEWNVGSFTEKLIEAASKSIPRTSGRIGPKAV
PWWCPEAKAAIRRRRKCLRSLRRLQQVNPDQPEALAEFQAAKAEARKAIKEAKEKSWESFVGKISPHSTTTELWRTVNTL
RGNRQKRSVILKRPNGFTDNPEEVAEELATYYGERSATSSYPPSFQMAKMAAERESIDVSSNTGDAYNVDITLAELLWAL
DKGRGASTGTDGIGYPLLQRLPVSVKFVLLELLNKIWRNGEFPASWRNALVVPIPKPNCQDSGPAAFRPISLTSCMAKTL
ERIINRRLITELESNGRLDKRQHAFRVGRGTDTYFAELERSIPNADEHCLIASLDLSKAYDTTWRHGILRTLKSWRIRGR
MMNLLQSFLSERTFQVSLGGYTSSEHKLENGVPQGSVLSVTLFLVAMQPIFRVLPDGVDILLYADDILLVVKRAKSEGLH
TKLQAAVKAVCKWAKSVGFAMSAAKSHVFYCSPNARREPARNVIVDQVSVPKTNRLRVLGVTLDRTLTFKPHCKMVKKAC
ESRLRILQMIGAKLPRGNRTSLLQVGSALVTAKLTYGIGLVSRGGPATLQTLAPAYNKMVRYASGAFVTSPIISVMAEAG
TLPFELLAVQCVARTAIRILAKNSRNNTLPLIRRASDRLEELTGTALPAVGQLVRQGDRAWNERKPSIVWDVKRSIRAGD
PPEKVRPVVQQLLSTRFRNSTVVYTDGSKCEDTVGAAFYNNGISGTFSLPKECSVFSAEAYAIKKAVSIPNIRNEVVILT
DSASCLQALEAGSSKHPWIQEIEHIVRNKNVRFCWIPGHAGITGNNEADRLANAARQQPAIDTPIPGEDALRATKEAIRC
RWDRQWFAIRDNKLREIKHDTKRWTERGNAADQRVLTRLRIGHTRLTHTFLLKKESPPTCECCGTSLDVRHLILHCRKYE
QERRKYDIDTLSLKEALDDTKERTKSC
>I_Ele13_gag#LINE/I 302-1999  [Aedes aegypti]
MMPGSGSAPHRGDPGGPGGGGNSPRNMFQGTYAGQRLPTYMDKEGIAGSLQVLKMQAVGENTSLPNDPFLLRLSVEKCVG
GPIDGAFKENRGISYALKVRSNVQFQKLLKMSRLIDGTEVMITEHPQLNTTKCVVSNYDSVGLSDAYLKEQLASQGVRDI
RRIQKRNSAGVPENTPTMILSIVGTVIPEHIDFGWTRCKTRSFYPSPMLCYHCWEYGHTRKRCQETHQICGTCSQVHPED
NILNGSNSRNAEDDEFSNKKPHCTNPPFCKNCKSNGHAVSSRKCPVYSKETAIQHIRIDMGYSYPQARREYEAQQGATGN
SGSYARIANLSKDKEIADMSDVVKKLQDDSKRKDEKIAELEKIVQNRSVGKRLDQVQKNGTIEDLTRRVIQLTEAVEQLQ
KTVQEKDREISRLRQYETLYTHMEPSQSITTVSQSLVPTPDCASIPATPAAPYDLRDPRIRSRCSKWIAENNSSENGPAQ
NTKNNRRKQKHRKQYESNKDRGFSSEESMKSFHSKNSMQTTTSVGTSASNPTKRNHPTTDSDSDSNGRTSKSKRSGVDGT
DTIEIE
>I-3_CQ_pol#LINE/I 2355-6054 via tfasty with I-1_DR_pol, 1 frameshift. [Culex quinquefasciatus]
MGNTPKTKNGISFLQWNCRSLTPKLNDFQQFAFERDCDVFALSETFLIGDETPAFRGYNIITESRAGPNRGGGVLIGVRK
CHTFRKVTLPKLGGIEAVAVQARIRGLDICIVSVYVPPQVSLTRQKLWGMLELLQAPRLVLGDFNLHSTEWGSHKTDPQA
YLIHELCDDFQMTLLNRDKQVTRIATPPTPTTSGTKASAIDLSLCSNSLAVLCDWTVLQDPRGSDHLPIAILVSHGPQQS
TTVEMPYDLTRNIDWKQYAEAVSIGVELRAGLAPLEEYAFLANTIYDSALQAQTKPVPGPYIRTRPPLPWWDKECTDLSA
ARSVAYVDFCKCGSPANFQRYRALDRRYSNTLKRKKRMYWREFVEGLPADTSMSTLWRVARAMRRGSVPNESVEKSDKWI
LDFAKKVCPDSVPTQPSFDVVDGSDSNPPFSMVELSIALLTGNNTAPGPDKIKFSLLKNLPDVAKQRLLKLFNTFVEQNV
IPHEWRQVRVVAIQKPGKPASDHNSYRPISLLSCLRKLLEKMILDRLEPWMEREHLLSDTQYGFRRGKGTSDCLALLATG
IDIARGKKQQMASVFLDIKGAFDSVSIDVLGVKLRRSGLNPTMCNFLINLLSEKHMHFVQGDLAITRISYMGLAQGSRLS
PSMYNFYVSDIDDCLTGDCTLIQYADDAVVSIAAKKEVDLLEPLQDTLNNLAHWAVGKGIEFSPEKTELVVFTGKHEPPQ
LNLSLSGKTIEQSDHFMYMGTIFDQKGTWGKHINYLKQKCLQRTNFLRSVSGNRWGAHPSDLLRLYKTTILSVLEYGSFC
FQSAAKSRLLVLQRIQYRSLRIVLGCMHSTHNMTLEVLAGVLPLRTRYYELSYRFLIRCDYRNKLVIDNFETLLNLHVES
RRMLLYYDFMSSWEWSPSTTVQRTPPLTSSTLIGFDTSMKADTRGIPNHLLRGVVPSIFASKYNHVPPNNRFFTDGSKLD
GCTGFGVYHESYQLFFKLKDPSSVYVAELAAVYCALRIIETMPPDHYFIFTDSFSSVEAIRSLKPTRESAFFLTEIRKTL
NNLAAQSFSITVVWVRAHCSIPGNEKADLLAKKGAESGDIFERPISLQECYGLPRQRALLDWQKQWDDDTKGRWMYSIRP
KVQRKAWFKGMDLTRGFIRTMSRLMSNHYSSKAHLYRINMSDTNLCDCGQGYQDIDHLVWACPDHQAHRIKLKDTLRARG
RPPEIPMRDALSQLDLDVLYPIYQFLSDSKISI
>I-3_AC_pol#LINE/I 2115-5783 [Aplysia californica]
MAVLQWNAGGIRPSIAELQHLQATLCPRVACIQETKFAPASTIDLRGFTAYHHIHTENQIASGGTTIYTDNHTLHRQVHL
KTTLQAIAVRVTLHRPITICSVYIPPNYPLKITQLNDLKSQLPKPFILLGDFNAHSPLWGDKPIDQKGKIIENFLFQNNI
CLLNDKSPTYRNRATYGTSSLDLTFCTPDLVPDLEWSVLDDRTDHFPILLKNNSLQNDPIPERFNFKKADWDGFANQCSK
ILNPNFDHNYNKFHEKLLEICHNHIPKTKTKPRRNKIWFSWECEDAVKKKKAAYRRAVNNTTIENKILYLKARAEARRCL
RESKRQSFQKYISKINSQTPLNQVFQIAKKFLGRRTDTIRHVQRPDGTTAETQVDIANTIATSLAKNSSQANYNTTFQNI
KTNREKQHLNFHSNNTETYNADFTIDELTSCISDLGDTAPGPDDIHNKIIRHLPSETLTLLLHIYNDMWRSHSFPESWRL
ATVIPIPKPNKDHTHPSNYRPIALTSCLCKLIEKMIHRRLMWFLETTGSLSGLQCGFRKTRSTLDHLVRLETFIRETFAE
RGHMIAIFFDLEKAFDTTWKYGILRDLHALGIRGHLPAFIGNFLKNRSFQVRVGSSLSDPHQQEEGVPQGSILSPLLFEI
KINSIVKTLQNSIDSSLYVDDFLICCRSKNPHLRSMERQLQTQLQKLETWANNNGFKFSPSKTVAVHFCRTGRRVLQPDL
TLYGERIPVQDQARFLGVIFDKKLTFIPHIKDLRVRCQKALNALKILSNPEWGGDSKHLLHLYISLVRSRLDYGCQVYGS
AKPHVLKILDPIQNQGLRLALGAFRTSPVESLQAEANIPPLSLRRTQLSLQYAVKQSSTPENPAHNSIFQTNPETINRFQ
NNEKLIKPFGLRILEDLKNLHFSKQDIQQILFPDLPPWHLTKAKVDLQLTTHNKESTNTKTFQAEYKKLIDKYPGAELIF
TDGSKKDNEVGAAALSPNNTHQRRLHPEASIFTAEATAIDMALDSVENSPNKSFLILSDSLSCITSLTNYTLLHPKIVRL
QQKIHTLSETGKNIMFAWIPSHVGIRGNEQVDDLAKKASSLLLGSTTNTLPQTDFRNKVKKYTSSLWESHWENQKNNKLY
EIKPRLEQRNPSDLSRRDEVIFTRLRIGHTALTHKYLLQGEEKPFCVGCDTDFTIRHILTECLDFGEIRRKYYKCKKLQD
IFSVVVPSRILNFIKAIGLYGEL
>I-3_DAn_pol#LINE/I 1435-5097  [Drosophila ananassae]
MLKILQLNVNGYLNNYNHLQILIKKHNPKIISIQDTHLHSTNNIPIPINFTIYHINNSNNPYGGVALLIHNSLQQQQTQI
RNISFDSIAVTVHSKIKFTIISSYIPPNKPFTLQELQDTYNYINTPILITGDFNSWHKSWGSQYNNPRGNVLFKFINQSL
LTTLNNGSPTHFTTHHTFTHIDLSLASPELYLHSKWTIENHLSGSDHFPITIQLFENISTDSSVIKPKFNIEKANWPLYQ
KFSKQFSDDRPLSQQINQETAHLCAIIRHSAHLSIPQYHPNSPKQVPWWDTDLQTLKTKKKLAWRNMCRNINTANIIAYK
KANAILKREIKQKKRKALHEFTSDINPQTPIPTIWKKINRFCGLKTNTQIHCLINPNNTTDTHTNKYDISKALCEFWSNA
SLNNNFHPTFRSHKENLNYNFSHSTSALTQPLECDISIIELKSAINQLKGKTPGRDRISYPMIKNLPDSVMQRLLKLYNN
ILNAHIPQQFKVSNIIPILKPDSNKTEIPSYRPISLNSCLSKVMDKIISKRLWWLVNNSQLLDSHQMGFRKGKSVSDSLA
TLDYLTTTTLSRKSHLSIISLDFSKAFDKIGIHTIIDELVEWKLGPKMIKYIINFLTNRKICVQTQNIQSQPLPLENGIP
QGSPLSVILFAIAYNKINRIIGLHKSFKFTAYADDYTIIKIHNRRDSSININPLLTDIQEWCNYSGACLSIPKSKYLHIC
RKKKCNFKVTSTINLKNEKSLKILGLTITNNYKWDAHIDQLVMQISKRLNIIKCLSSTSFNCHIKTIIYVINSVIMSKID
YGLFLYGKAPKSKLNKIKTIYHSAIRIALGAFRSSPINNLLYEANISTIEQRTKHAILKNFKMISTSKKTPLEQIIKKIS
KKKRIPKLSSTLKDTIDQCNEIQLYPIPITIRKETTPAWTYSVTKINKSLHTSTKPNTPPLVYQQKFQEMKDTLKQHTFL
YTDGSKTVSGVTYSVTSTHHIITQQILPPYSSIFTAEIAAILHACKYAEKQVGKFAICTDSLSALTALENPNNSTYYILE
IRKIIYRYKYKLVLIWVPGHSGIMGNELADQAAKEALTMPLISEINYNLPDILKYISNHIKAQHDLIWNNTSAHYKHINT
KKQKNITLLKPTISRIDTIKFMRLRIGHTKLTHSHLFDKTPPPICQQCNINLTLSHIFLECPTYIEHRRKFLQKTLEEIV
DPTNITTTIQFLKSTNLYNNI
>I_Ele8_pol#LINE/I 1838-6130  [Aedes aegypti]
MAQNQNQLVTQSTNSIHPKINNHRFEACERVVPPSLRKEAQGEEETVRDVTPQPVDGKSSSAAGWHAPHSQHQSQTDQQN
TNHPSTCSLHTKNVLSHNSLNPTSEVSMSALSRAMHVSTSEKSNMPKEAPSDGTLNCLPRAALTDAYQYDLFYNHMQRPG
SSETPTITRCRTFPPTNAYNPSAEEQQKSGSENLIINDREYGESYSNRRRSPTISTNDTFSGSATTRLALQWNINGLFNN
LGDLQLLIHDNAPQAIALQEIHCRNARNLDRLLEGKYRWYVKTGSTLFQNVALAIHQSVAHTFVPLNTALIAVAAKVHLP
FRHTIVSIYLQNSGISNLEEQLASLFDQLEKPLLVLGDFNGHHYAWGSPKTDGRGVAILNTAEQHDLIVMNDGSPTFLRT
NCRSCIDVSLASSNILASLNWYIHSDPMGSDHFPIEIQHNAPPPETTRRPKWKLNEANWEGYEQTITSLIDPNREYQLEE
LSNIIIDAATKQIPKTSSRPGRKASHWWCDEVKTAVKARRKALRAVKRIPRDHPNNDAIHAEYRRLRNECRKTIREAKQR
SWEKFLDGFDCEQSTSEMWRRVNALSGRRKLRGIAICQDDIISRDPTFVANNIGKYFAKISSLAEYDDSFLKFQEDKNCT
LSKIIVPNDEENNDFNQPFTLEELLFSLDASNGKSAGPDGISYPLLKRLPLRGKIALLEMFNAIWKAGSFPPDWRHSLVV
PIPKKQATSTNPQDFRPIALTSCISKVLERMVNRRLTTVLQEKQLLDFRQHGFLKGRGTGSYLASFGQVLHDALSNGLHV
DIAALDLSKAYNRVWRPSVLRQLINWGIVGNMGKFIKGFLDRRTFQVIIGNTLSEEFIEESGVPQGSVLAVSLFLVAMNS
VFNDLPDGIFIFVYADDIILVVVGRSPKLIRRKLQSAVRKVSKWAISCGFKMAAEKCVISHVCNFKHHPWTNPVIVDGCE
VAFKKEAKILGVVVDRKCNFASHFSFVKKDSESRIRLIKAISGRHSTNNRRSLMNIGRSIIISKLLYGLEITIRSATLMI
QMFSPTYNKMIRLTSGLLPSSPTLSTMVEAGILPFEYTLTAAASNRAISFIEKTYGAQRDIFILDETRKLLQQYTNIDFP
EIATLHRVGNRRWDRPNPKVDWSIKREIRAGESPEKIQAIFNELIENKYATHCKIYTDGSRSNGKVGIGISSPIGNFARR
LPDQFTVFSAEAAAVYFAIKKCTSIPNASIIFSDSASTLAALENPQQKHPLIQAIENSILPNTTLCWVPGHSGVRGNEEA
DKLASIGRTSTKWNLGIPRADMKLVIQNALQDAWYRRWESNNGEFLRKIKNTVSEWSDRKNRKEQKILSRLRIGHTRVTH
AHYISNSTKTTCETCSVPLTVEHILLNCQKYADIRNNLNLQDSIRTVLSNDVNEEEKLLKFLKETKLXNEI
>I-3_DEu_gag#LINE/I 150-1448  [Drosophila eugracilis]
MTDPPDIFKISSKSYHSQLGDPKFIIIKRKDNXSFEKISPFIIKKSVDFACGGEVDGCKKIRDGTLLIKTKNELQARKLL
KLTKIAEMEVTTSEHKTLNFSKGVIYCNDLRYIDEDTILQELKPQKVSEVKKIMKRQNPNTNSDSSNTTLVETGLIIITF
ETHKLPEILRIGYETVRVREYIPLPLRCRKCLRFGHPAPICKSSETCTNCSETKHTNDNETCKNEKNDLNCKNNPELDHQ
HSPTDRKCPTFIKNQELTAIKTTQKVDHKTAQRIYFERHGFQSRNTYAKTLANATTQRTTNPQSSNANINTHTNTTQPQH
KKSNTTPTSGTQTSPLNTTATGLVTTTLPSGQTLQRHHHHDYDKLEDMDIDCITHTKKPTTPYSSQLTEDSLKIKIFHKD
KSKNLTTNLKASKTKTKALNKIQLTNNSDSESI
>Mosqul_Aa2_pol#LINE/I 2557-6531 [Aedes aegypti]
MYLERQSCIGEALSTLRFRTQPRISPEDSRWPTLPQSIRSNAALYDSYQFKHRGTSIPKAGSSGWCLPIVEYTGDDCSAP
SRREITETVFLSRPPTPSTRSLSEQPTLRHPRNISSMPSVSTLFAIQWNMNGNINNLPDLELLVRDQQPIILAIQETHRI
NTNRLNHSLQKRYSWTLKCNENIYHSAAIGVLPTVPFSPLPLNTDLPIVAVKLEYPFPMTVISGYLPNGNIPDLKLRLFN
ALQSLSSPILVMWDVNGHHPEWGSVSPNDRGSLIMDVAEKLDLVILNDGATTFTRGQRNSAIDVSLCSPSIVNRLLWTAK
EDPMGSDHHPIFIHIDEQPQATSRRPRWKYDQADWSHFQTLIDTEVSDKPPDNIEGFLSVLHQAASTSIPRTTPNPGRRS
LPWWSPDIKKVIKERRKALRAAKRLADDHPEKSKLTEIYRSKRNECRQRIRDAKKKTWEDFLEGINANQTASELWNRVNA
LNGKRRATGMTLRLPGGLTRDPLLIANALADHFASLSSLDRYGRNFILKNQASIDSITNLVIPEDNTPLRINSPFRMEEL
NFALRHCKSKSAGPDDLGYPLFQHLSIVSKATLLDLLNKTWIENTLPKSWTHSLVVPIPKHGKAATSPGDFRPISLTCCA
SKILERMVNRRLIRFLEDNQFLDHRQHAFRPGHGAETYFTGLGDVLQDAMGKGLHADMASLDLAKAYNRAWTPHAIRRLA
DWGLCGHILHFLKNFLKGRTFQVIIGNNHSSIRAEETGVPQGSVIAVTIFLVLMNNIFEALPKEIYIFVYADDILLVVIG
RTLKFIRRKLQAAVSAVARWAANSGFDLSAEKSVISHVCRSRHRVLQTPVMVNGCPIPCRKTMVILGVQLDRELRFDAHL
NAIKRNYQTRINLLRTLSKPHKSSNRDILVRIAKSIINSRLFYGIELFGLAGDTLITRLAPTYNQSIRIIAGLLPSTPAD
AACVELGVLPFRYQATETLCCRTIAYLEKTTGDHEVFLLREGNRALDSLAHQELPPVEQVHWVGARRWDAPDFLVDTSVS
KRFRAGDNSPAMRSHVTELLASKYRNYHHRFTDGSKYLDRTGFGVTDIDKSYFYRLPDQCSVFSAEAAAILLASTTPAPK
PICVISDSASVLATINSSSTRHPWIQAVQKNSPSQTVFLWVPGHCGIRGNVEADHLASKGRSGRLFTRLTPGMDLKNWTK
SQIRSSWALEWVNLRDKFIRKIKGETKRWIDTNNRRDQQVLSRLRTGHTHATHNMGNERPFRKKCIVCNTTMSVEHMIIN
CPCFQAPRERHNIPDSIRDALSNEASSEAAIISFFKDAGLYNKI
>DOC3_DM_gag#LINE/Jockey 173-1939 [Drosophila fruit fly genus]
SKTKKQIDNERIDRSKMSQRELRAQRQKEQDERRLSSQRNNAYFTVVSDARECQIIHPVNDLAPAECKRSRSCSPMLMTA
RNEPERTESVSLKLSPFQTVSSSLATSTAITISTATAPLATTTATTTATASTSTLCSIPTAVYNSAVPTTTKARALTPTL
ESGSGQEPKQNKKLCQTGLDRYIQIKRKRSPQHKQAGNQPKINRANASNDSSSNRFALLDDCEVQEQEQKKIKPPPIYIR
EKTSSALVNKLAAIIGENKFHVIPLTKGNIQETKVQTQDESSHRSVTKYLDEAGKSYYTYQLKSAKGLQVVIKGIESSVT
SSEIIAALKEKNFNAKTVINILNRNKEPQPLFKVELEPSSQKNNKNEVHPIYKLQYLLHRRITVEEPHKRRQPVQCTNCQ
EYGHTKAYCTLKSICVVCSDAHSTVNCPKNKNDSSIKLCTNCGEKHTANWRGCIVYKELKSRLNKRVDSARDRITPTILK
AMEPTTTNIPSSASHRTMPNSSFASVLKSGIQAPTAVTSSVQHKTHQINTNKQINTQNMQQQPIGVEAIMLSMQQSMKDF
MTFMQETMQELMRNQNILIQMLVSSKIG
>DOC2_DM_pol#LINE/Jockey 1992-4675 via tfasty with DOC_pol, 2 frameshifts [Drosophila fruit fly genus]
MSPLQISMWNANGVSRHKNELAQFLFEKNIDVMLLSETHLTDKHNFHIPGYLFYATNHPDGKAHGGTGILIRSRIKHHLY
NRTEMDYLQSTSISMQSSSGPVTLAAVYCPPRFVVSEDQFSEFFNSLGERFIAAGDYNAKHTHWGSRLLTPKGKQLYNAL
IKPRNKLDHVTPGRPTYWPADPNKLPDLIDFAITRKIPRNNITAESLAELSSDHSPVLLTLWHRPHITERPYRLTGNRTN
WTRYAKYVCTHMEPTQTVFTDEDVDRLVKSIEETLVAAAKASTPPDTHKMTNHSKTNREIEQLVLEKRRLRREWQNHRSP
TAKEHLKIATRKLTRALKLEEANAQHLYIKQLSPTSKRNPLWKAHKSIQPPAETVVPLRGPSGSWIRSDEDRANAFADHL
QKVFQPNPASNSFVLPVVTKSLPPINPVTFSQSEIASIIKDLKPKKSPGHDLVTPKMIIELPPCAVLTLCHLFNAITKLG
YYPQRWKKAVIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKAFLKQLTPYLKRRNTIPSHQFGFRKNHGTIEQVNRITN
EIRTAFEHREYCSAIFLDVAQAFDRVWLEGLMYKITKLLPQNTHKVFESYLFKRVFSTRCNSSTSHDRVINAGVPQGSVL
GPVLYTLFTADMPTNYQLTTSTFADDTAILSRSRCPAKATEQLACHLKIVERWFADWRIKINETKSRHVTFTLNRQTCPP
CTLNNTFIPQADVVTYLGVHLDRRLTWRRHIESKRTHMKLKAANLRWFINYNSPLSLEYKVLLYNTVLKPLWTYGCELWG
NASKTNIEIIQRAQSTILRTITGAPWYLRSESIHRDLHINLVNEEIQMKKSKHQAKLAAHENPLAKSLTRVYSQSRLKRK
DSPAQQRNPRAVSN
>FW2_DM_gag#LINE/Jockey 71-1252 [Drosophila fruit fly genus]
MGNKSKINCDITRQKTNMPNNDNRFAILADLDDLPNSDKDIKKTPKPPPIYIREKSSSALVNKKMDLIEKDSFHIIPLTK
GNIHETKVQVKTEVNFRALTKYLNDAKKNFYTYQPKSSKGLQSSIKGLRPEITPEEISGAQIEQGFKPKSVINIFNKDKK
PQPLFKVELEPDSWALKKNESHPIYKLQYLLHRRISVEEPHKRKGPVQCANCQEYGHTKTYCTLRTVCVACGELHSSVNC
PSNKADPGMKKCSNCGGNHTANYRGCPVYKDLKNRLHQKVTMMRGQSTPSTIIPSKHTPDVHLNSLTNRNVTFASALKSG
LASTNPTTPFPLAEQNKVNADQPTGQPQGNIETMIFNLQQSMTEFMTFMRTTMENLMRNQDLLIQMLVSQQSK
>G4_DM_pol#LINE/Jockey 1075-3725 via tfasty with G2_DM_pol, 1 frameshift and 1 stopcodon [Drosophila fruit fly genus]
MQVNLNLGIWNGNGLSSHVNEISLLKTNEIDIMLISETHFTSKPYIMVVGYDIIRADHRSFxLDLLIRRLKLDGLKFQIM
DSIRENAMQAATVTIKCMHADVSVTAIYLPPRFALKEADFKNFFQKLGPQFILRGDFNDKHPWWGSRLTNPKGSELYKCI
VNNSITTFSTGKPTYWPTNSRKIPNLKDFVAYFGIPESHMRIMESFDLSSDHSLIIVTYSTVAHILTKPYKVISANTDIN
AFKSYLETDKIDHAVELLTEQDKVSYICTKLPARNSQSNQLYLSAEIRQQIQHKRNLRKRWQETLYPADKRSYNKAASDL
KKLLSTLRNESLAEYLRNLDPHSCNHEHNLWRATKYLKRPAKRNTVVRNCNGEWCRSDDEQAKAFAQHLHSVFQPNDIDN
PQTEREVDNFLESPCQMSLPIRKISINEVSSEIKWLNSKKAPGSDKIDGITLKILPPKCVRFLTFIFNAMLRVDHFPSQW
KCAEIIMILKPNKAENEVTSYRPISLLSIFSKVFEKILLKRMLPILDEFAIIPEHQFGFRRGHGTPEQCHRIINEILSAF
ESKKYCTATFLDVQQAFDRVWHDGLLYKIKKWLPAPYFLLLKSYLTNRHFYVQQKNEYSPLHFIKAGVPQGSVLGPVLYT
LYTADMPVTNTCTVATYADDTAILATSSSKEEASQLLQAELRLIESWFLLWKIKVNALKSAQITFALRRGDCPEVSFNGS
AIPQSNCIKYLGLHLDRRLTWKNHIKAKRQQLNQKSLKMTWLLGRKSATTLENKVRLYKAILKPVWTYGIQLWGTASNSN
IEILQRYQSKILRQIVNAPFYISNASIHKDLGIPYVKEEIAKHSKKYIDRLRTHENNLALSLVNNNNNVRRLKRFHVLDL
PDRY
>G3_DM_gag#LINE/Jockey 778-1818 [Drosophila fruit fly genus]
LSTMDLPLLAMITTLLCLLKRTCTNPTKDDEIKSDTPSSEKPPPIFISDVNDINGWLRYLNLHMDSTEFTYKSQRDGQTR
IMVKNVEEFRELVKKLNTDQVKYHTFQLKQVRAFRVLAKNIHHSTDIESIKKSIEMQGHVVRGIHNIKSRITKEPLRMFF
IDLEPHNNNSEIYNVKHINNAIITIEPPKKVSDMVKCYRSQEFGHIKSYCNKKFRCVKCAENHSSISCPKEKTEPATCAN
CHENHAASYKGCRIYQEISKKRSNVPNSRPALTSLYDIPRATSFIPTKPNHEKSYANQANYAQVVRDETEQEKSTLDRIE
KLLMKQSELTSNLLNMIMMLVNKLCK
>BS_pol#LINE/Jockey 2389-4971 [Drosophila fruit fly genus]
RYMDMRTISHIGHPLIIIVLAGVAVFVRTTLRHFPQRVIETRHIQLSSVKVATGLGDLQFSAIYCSPSTRIEERHFTDII
RACGQRYLVGGDWNARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAVYHGIPDHLATITQ
SWDLDSDHLPLIISIETDSTHVNPSPRLVTKHTDLLAFSRQLESLISLNTTLNSGEEIEMAVDNLTESIHRAAAVSTSPV
PRIGTTYGIVLTREARELLTQKRRLRRRAIRSQDPWDRLLWNRAAKQLRNVLRELRSNFFEQKLASMDYTVDAGYSLWKC
TKSLKRQPFRQVPIRCPGGELAKNEEEQANCFANHLETRFTHFQFATTEQYQETLDSLETPLQMSLPIKPIRVEEIVEAI
KSLPLKKSPGIDNVCNATLKALPVRTILYLALIYNAILRVQFFPKQWKMAAILMIHKPGKPEESPESYRPISLLSSLSKL
WERLIANRLNDIMTERRILPDHQFGFRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRVWHDGLISKVKKLF
PAPYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLPCPNAYHMADPRKALLATYADDIALLY
SSNCCNEAARGLQEYLTTLAAWCKRWNLKVNPQKTINPCFTLKTLSPVTAPIELEGVILDQPSQAKYLGITLDKRLTFGP
HLKATTRRCYQRMQQLRWLLNRKSTMTLRAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYVR
GTTLHRDLNLHTVEEQISKHTSRYSDRLRRHHSILARRLLPARPLRRLKRKGFAKTLGQP
>Nimb-2_CQ_pol#LINE/I-Nimb 2084-5908  [Culex quinquefasciatus]
MDLSTTNKTKDKEPAMNKNYSNIISWNTQGLRTSKPNLKILCSKINPSVLCLQETMCSSKDQANINGYSIYYRPRAGGDR
AAGGVLVGVKPELDSEEIDLDTNLEAIAVKVGPPFNLTIINTYLPPGQAIQASEIVHLINQVPQPRLLVGDINAHHPLWG
SETFSARGLMFEEVLNECNLVVLNKTDPTHISVATGTLTSIDVACCSTEIIDQLDFSVLQDAYGSDHLPLLLTLPDTAHA
IRTRPKWKIEEADWETFQTTVQFPLMPTATQQISSITQKILEAAEQTIPKTTGMVNKRAVPWWNQEVASAVKSRKKALRA
LQSAKRNNLENQEALAAEFRAARSHARKVIQEAQRTSWINFVNDFTVQTPVKEVWENFRRIQGKRKTNRISAITAEGGTV
SKDEDIAEALASSFASISSNDAYSPEFRAFKDQVEQTPLSIPADTSAEYNKPFLFTEFEEATAGLRGSSPGPDTVHYSMI
VKLPLDCKRQLLDAYNRLWLGSVYPPEWTESLVIPIFKNCGEKANPRNYRPIFLNSCLGKVFERMVNNRLVHIIETRRLL
HPHQFAFRKGKTTVDHLAELEKVVRAAWNKKEYVQGIFLDVTKAYDTTWRRLVLNQLRDWNIEGLMLKFLDRMLENRSFR
VFVNGQLSQSKIMETGLCQGSVLSVTLFLVAINTLVARMPPSITTLLYADDVVLLASGRDVEEVENDLQAALKAVECWQS
STGFKISAEKSATVIFRSYGTRKPPSRAALELNGTLIPTKKQHRCLGVILDQHLPFKTHCEEVKAACRQRVQLIRCVARR
SWGGDRKTLIKLYRATVLEKILYAAPITAAVSDNVLKILEPTHNAGLRAICGAFRTSPVDSLQAETGIPSLRVFFEQRTA
IYAARKAAISAQSRTQPAEDDSQSAGSSTESSYDSNSSGEEWNSTRHRGPLRGVETAETRGKAILEELELPLPELKIFTL
PLCPPWERRRIRIDKTLLEAERAGATSTQLKELFVSRRNTEYRLCETIFTDGSKKDGRVGYAMVRGDLVVRRRISDLSSI
FAAECGAITEALRWIIGQNRVGTYLVCTDSLSAITALGKRKTKCRWKDEINILHNQAECNGTEIIYMWVKSHVGIAGNEK
ADEEAKQSLNDRNIWDRSVEFKEFRTVIKKRTVWRWNAEWSRKVGNKLREVKNSVLPYRDVFVGSRKEDVILTRLRIGHT
LLTHQYLLEKDSAPRCTRCNLALTVKHILAECPEFEEQRRRAGVPSNVREALADDRDMAKNVLKFLKATDMYGKV
>Nimb-1_DPu_pol#LINE/I-Nimb 1956-5696 [Daphnia pulex]
MMTRSTAFSFNNPKTQIRILQWNARSLNSNGTEFVKFLSEMTSPPNIICIQETWLDESKEFEIDGFDHIRADRRDRIGGG
VATFVAIGTPFRQIDLPPSTLEAVAVEVFTDEKSISICNIYHSSQENDVQVFENILRDLPPDSTPFLCGDFNSHHEMWGG
KKNDHKGLSLVSFIEENGLVALNDGNITYRSSSGASSVLDLTITTPDIAAKCSWSVVSESTFGSDHHPVMTNIAIPVPVE
RSNNSRWNFKKADWVGFAQTCADISYMDLFSTDIDVFNENVTHAIILAASNHIPVVRQGNHKPGVPWWNAACADAIKEKE
KAWVRANASRNPDDYKIYSTLRNKSRSVMRNAKKEHWRAHCSTINKNTTSRDLWEKTNQMLGRNNKTKPISVLLDKNGAC
VTESSAKANLFAKHYKAVSSDTNLSESFLQHRRISEQSMEDGEADEPDGRIGDAETNADFSMQELTTALKEAKDTAVGCD
RISLSMLRHLPDTALRTLLALYNESWKQGTLPKGWKHSLIIPLLKPNKTASKPESYRPISLTPVPCKVLERMIKIRLSWY
LEKNLLLAPNQSGFRRNRGTMDNLVRLENSVQSALNNKGYVMAVTLDLEKAYDMIWIKGLIYKLKKLGIRGNMLKWITSF
LVGRTAQVSLNGTQSELFSCLNGTPQGSVISPLLFIILINDIAKKRRSCMSGMYADDIFIWQKHRNIHFLRKKVEKDTQD
VIVELRLWGFLVSAAKTGAIVFSKRNIPENLSITVDGASIQVQKSIKLLGMTLDSKLNWCKQIDDVVSKCSKVLNFLRLI
SGTKWGAHAKPMLQIYQALIRSKLDYGGELIESASITAKKKLDKIQAQALKTVVGAPRDTATEALLRETGEMPLHLRRNL
ASVKHYLRCYEVKSDLLAEKEEWFKNAKQCFLSRVESVTNTLDHHPKSVEKLSISKHPPWQALLPEVTTYTPNDLKWQNV
VHIYTDAAKSKDGRCAVAFVVPEKVIVEQKRLVDGLATAKCELVAIHLAVKWAEAHAALGSFVILTDSKKALQILNSSRE
NNSVKTSTVDTWRALSRAGTTVSFSWVKGHSGISGNEQADRAAKNGLELKPSLSCRRDTNDIRENVEDLLLKKWQGLWDK
PKTECGRFTHRHSPVVSRIASLFGQSRSEQVFLSQIRLDMLPLNHRLFKRKKHPTGLCSNCDAEEKENVEHVLLACPAYS
KEREEMVYVVSENTPTLQELLNFNDEVTLKAVLDFFNAIGIKARLGF
>Nimb-2_DR_pol#LINE/I-Nimb 1248-5006 [Danio rerio]
MLNVLQWNARSLIANGQEFKKYIDNIIEKPNIICIQETWLKPQLDFNIKGYNIVRNDRNHSRGGGIATFIKSGMKFRIEQ
INTKYESILIKVWTDRGCIDIINYYNPCDKLNQNILEEVMGVRQDSVLWCGDFNSHNSLWGSNSNDANGILLEEFIDEKY
LVCLNNGEGTRYNCFKNTESVLDLTFISSSLAAVSTWKVLKHNTIGSDHYPVVTKIGLKIMYEKEDRIPRWKLEKVNWKE
FQELCDKRVMTIQIINQRDVNILNNKIVNEIIQAAEEIIPKSKGVGCTKNVPWWNNDCKAAIKARNKAFRHLKKHHSLEA
MIMYKKAQTILRKTIKTQKRIFWREYCNSLGREVQLSEVWGMIRRMAGVRRNYELPVLQYGDIVAISNLEKAELLVQHFR
NVHSSDNLSEEARKCRNTTLTKHPDLLKKVKTTENPLDLQFNMFELKRAIISARQTAPGKDEICYKMLSHMSEASLEIVL
NLFNQIWDMGQLPIAWKQSIVVPILKPGKNPSDPSSYRPISLTSHLCKIMERMITERITYFLESKNLFSPYQSGFRRGRN
TMDSVLCLESDIRKAQTNKEVVIAIFFDIEKAYDMLWKEGLLIKLKSLGVTGKTYNWVMDFLFGRKIQVRVGKEYSHEYT
VENGTPQGSVCSPLLFNIMINDIFSQIEQSIGKSLYADDGALWIRGRNVSFVQKKIQNAIFEVEKWANKWGFKLSVAKTQ
VICFSRRHKTISLALKLYGQPLEQVKTVRFLGVWFDEKLTWKDHLNKITEKSKKVINVLRCLSGQEWGASRTSLQNIYWA
LMRSVFDYGCIAYMSAAESNLKKLDVLQAQALRICSGSFRTSPVSSMQVEMGEMPLSIRRMKLMMAYWVNIQGQIESHPT
KRTLLECWEHEETNFISFGWIAEAKARIIGLDQLQYCKAVPIPYIPPWFFPLPKVDFNIQQELKDNNNILPTKYIVQNYL
EKNYKESIFLFTDGSKDPQTGHTGAAVYIPVNQYHIKKRITNNISVYTTELIAILIALQWIEENDIYNVVIASDSFSSLE
SIRSGRSSYRMDILNNILSKTYYIKMKGKSVYFIWVPAHVGVEGNEKADFLAKQALRISKVNLEVPLSKAEAKIMIRTYA
QSIWQVHWDNIDTGRHLYNIQKQVGTGRKENRNRREGSIITRMRIGHTGLNHTLHKIGKHPTGQCIHCNQQETIEHILFH
CSXYNKERNDLIQSVKKSNLQHFTLAGLLGNKSSEVYNDIIKFIKETQLEERI
>55239499_Aga_pol#LINE/Jockey gi|55239499|gb|EAL40159.1| ENSANGP00000028487 [Anopheles gambiae str. PEST]
EVDDSLSVVDETQSSIPRDSRVTTGKIHSALRRLKNMKAPGFDGIFNILLKHLQNKAICLLTNIFQRCLELGYFPSAWKC
AKVVPILKPGKDPTIRMIYRPIRLLPSLGKLFEGIVCGLLQASVEDRDIFPSDQFRFRSGHSTVHKLLRLKQYFEQNKRV
SKSTMVAMLDVEKAFDNVWHDGLVHKLVTFSIPMYLVKFISSYLQQRTFRVALCSTLSDSHPVSAGVPQGSLLGPLLYIL
YTADIPMLPDGSPMFLFADDTAIAAKGRSLVEMRRRIQSCLDTFVQYAANWKIRGCAMVVPHRLKQSLIPTWQTRLLING
FPIEWTENVRYLGLILDRKMLSHGQVERVLHLRHKLMMSLYPLISRRSKLSFENSQSVYNQIINPAVLYGCPVWGSCARI
NRRRIQVMLNKILRMIAQVHMYTSNRTLYKLCRTIPVEEEILK
>Nimbus_gag#LINE/I-Nimb 554-1936 [Biomphalaria glabrata]
MDKKTHTKLLAPDLCLGKKRRIDDKKEEVPKSCATWPSFLVVRCTEEGKSLTKLSPFIIYKGLKSVVGEPKSVSKLHKTM
ELLVEVDSKTHSDGLLRCRRLCDLQVEVMPHKSLNTSRGVISSRDLLECSEKEIVEGIEGVTHARRITRRREGEEIKTAT
IILTFGTRTPPEYVKAGYLRVPVRPYIPNPMRCFKCQGYGHGAAVCKRNTVCARCAGEGHEDKGCTAQFKCPNCQAGHSA
YSKDCPVWKQEVAVQEYKARNGCTFSQAKSAVLALPKGQFGLTKTYAQAVAKKGRSIATQTDTLTPPPPPPPPTQKKTPP
KNTPLKKQESPVVMLKNRFSVLADESMETEQHVKTNTPGEPGDIMSDTGSPQRTQPDTPTSTELEVDQLPKGRNQSGEDA
RGERGGNNLRSNQRDLPSPERKTSPKRGLSSSPSKPKNKNTKVTGIKGNPSGGLPRPNSSK
>LINE2B_CB_pol#LINE/CR1 3-2399 fragment  [Caenorhabditis briggsae]
SLIAHLDKFLPLDSSILXXDFIFPSLSWNPLNHNHQFXSFLTSRGLHQHVCFPTRVSDTSAKILDLVISSDDLPLSNVAV
EPPLLNSDHFAVKFHILPTTLTPLSPSISRPRLWFKKCNLRSLNSDLATIDWDLSFSXLPSPSEKFTKFIDILSTLIRNH
TPLLPPPKSKPFSLPFRKLKRARHLYSKLLKTPTTAPRKILHVRTRIKSLTRTINKKMVSDEFRILSAPHCRAARALIKS
RIRSSPKVPPLSANGCLITSEHEKSTLFTKTFSSNYNHLTSSASITPAISHQHLPFSGSDLEIFDPWIIEKLLRKLPPRC
GYSPHSANYFIIKKCATTLALPLSIIFSDSLSTSHVPDSWKHAVVVPIPKKGSPSSPENYRPISLTDPFARIFERLVCDR
IKWEFLHQFSSLQHGFLSNRSCTTSLVQSFSNYKATLLKYNTLDVVFFDFRKAFDQVHHQLLIQKLASFGVPKSYVAWFS
SFLSGRTFSVKIYDFIGPPSSVIPSGVPQGSVSGPLLFLIFINDLLLELEQIPSLHLAAFADDIKLYSHDPIALQTGINM
VVNWATANHLPLAHSKTALLRLGSHNSSHPLNIAGVTLTPSSSVRDLGLITDSSLKFSAHINKITSLALLRSKQLLKSFR
SKSPEFYIHLFKCYVLPILEYCSVVYSPPPSSRLALKLESPLRFFSKCIFQRCNIQYSSYSDRLSILNMFSIRHRRLKAQ
LILLYKFLNGSAYFPNLNAHVKYSSSPRRPMNLIIVQPYSSDYFSXIVPLWNAITSQVTRFLLPSEFESLISSSITRY
>LINE2A_CE_gag#LINE/CR1 71-883 [Caenorhabditis elegans]
MPPPDDDMIVDSSPTATIPPTCDNILRNQNLPSTPASGQPSIKELIERITILEKTVKEQSKKIAELEATKGFPLITNDAS
KSKSKLYSAVVQNDPQSVKIIEKAHFAADLRKLGENSIYAIIENVPDCKKEEQTTIDASLMENLAKLDTLPKPEQFFRIK
CKKPDVPSRPLKVKFATEYQRDTFIRQFSKALHNLPERPVSSRTIRCRRDMSPEELILLKQRRATAYEENRKAGVIKYYV
RDLDICELSTPRPLTAQITPTSAPGLSSST
>Perere-2_pol#LINE/CR1 1929-4289 [Schistosoma mansoni]
MVDWGNLRTESSANSFEQELVDAVITCALVQHVKEATRYDPGSASSLLDLILTHYEDDVANLDYMPPLGKSDHAVLSFDF
HITVDHEYASAQSRPNVWKADIPDIMKSASSVDWKIDPESSIETAWDLFRNLYLKVTAPHIPWTTPKRPRNSPPWFSREV
RILLRKRRKMWDRFRLLGTDEAKSQYQKARNTCASTLRKARKLYEEKIVRESIECPKRLYSYINQRTKRRRNVPSLWGDS
TATSLVEDDFGKAQVFSKYFSDVYTIETPFSPVHENPPTQALDSVTIKELDVFGLLIKLDIGKSTGPDELHPKLLKELAN
FVVNPLSVCFNLSVTQGRLPKDWKNAIVSPVFKTGTKHKPENYRPISLTSVVVKILEKIIRKELLKYLDENRILSKKQNS
FRTGYSCLTNLLVARESWCALKDQKLPIDVVYIDFSKAFDKVPHNRLLYKLRNVGIGGNLLMWIKDFLVGRQQRVRVNSK
LSSWETVLSGVPQGTVLGPVLFLLYVNDLPRLLSSSVLLYADDVKIWRAIQSKGDSLELQNDLERLSEWSQTWQLPINTS
KCIVMHIGHQGTDTYTMNNTELPIVQAHNDLGVIVSQDLKTTAHCRAIDAKGFRTLWSIRRAFRHLDAKTFLTLYTVFVR
PKLEYCIQAASPCLKKDSELLERVQRTATRLIPGIAKLPYGTRLTKLNLLPLSYRRIRGDLITVFKLLNDKFAPDMPSFF
LSSKTENLRGHSKKVHKPRRNYLSADYRLSHRIINEWNSLPQHVVEAPSVDSFKRKLDQLRDHHCQD
>CR1-1_HM_pol#LINE/CR1-Zenon 370-3246  [Hydra magnipapillata]
MTKVTKNLKPKKPSPPPKYFNISFTNIRGLRSNFPSVESYLLQNSPDLLALSETNLNSAIPSSDVSVDGYYPLIRKDSNS
HMLGLGVYIRINSPICREIRFESFDHSFMCFRLAPLHSITFLFVLYRSPSSHDCTLLDVISDQIDHALSLYPSANIVVVG
DFNAHHTEWLGSNTTDPAGTKAFNFCVSQSLTQIVNFVTRFPDNPNHLPSLLDLCLVSDPSLCSVSPFSPLGGSDHAMIS
INLSSRTSFLGSPYHRTTYYYPKADWDSFRDFLRDGPWADVFSLSADKCASYVTSWIQAGMEAFIPSRRFQVKPHSTPWF
SPSCAAAISNRNHFFHLFQKNNSLENKRLFIIARNRCKKVLSDAKLHYSQFTKSRILSQKLGSKDFWKIFNSIINKGRSN
IPSLIHGTDLITSPKDKAELFAKNFSSNSTLESYGHSLPSIPVKQVDPLLDIQITPASVAKVISQLNSSTACGPDNIPVT
VLQNCSPELSSILSKLFNKCLTESCFPACWKMASVVPIFKNSGENSDPSNYRPISLLSVISKVFESLINKFLTSHLESNK
LLSDNQYGFRSSRSTADLLTAVTERFYRALDGGGEARAIALDISKAFDKVWHAGLLHKLASYGVSGKVFEIIKSFLSNRF
IKVILEGQHSSLFPVTSGVPQGSILGPVLFLIYINDLPDNLSSKVALFADDSTLYSCLDKKSSLFDRLEQAADLESDLTS
VIDWGSQWLVNFNSKKTQLLTANNYRNMVNIPILMNGNPLTESSSLRLLGLSLTTDLSWKPYIQSIAKLASAKVASLYRA
RHFLTSDSILYLYKSLIRPCMEYCCHIWAGSSNDSLSLLDKVQKRIVNVVGPGLSAKLEPLSHRRKVASLSLFYKYYHGH
CSKELSSLVPSTKIHSRFTRHSAKSHSFTVSVPACSKNFYSSSFFPRTSILWNSLPSSCFPDSYNLQLFKSSVNRFLAL
>Perere-7_gag#LINE/CR1 27-1076 [Schistosoma mansoni]
RLPQSWCVARRLRKAQIKTSCPILFQFGSIIEANHLLKGQSLLRRIPTIKKVRITHDKTAIQRRNSSEVQNNQPSLRGSG
SYNVGHSAIPKTPYPTPLKNGGTPHTATSPKNKTKHQAAVTIHPKPKHSTTTKCPPTYASTVSKHSSCVSNVKPKPKPHI
NRSNSYNRPNTVMRNNTKFSLNTHKYSRSLNTQHAPTHSSRMHYNKHNELAVPPYPNVRLRPTKTTLTHDANKPYSLKHA
GYRNQHSPHNRNTTPGNNARQSCNNYLKHTTPLTTRNRSRTPHCTQGNHNVDLLGDPPIDSKYYQNQTTLYNSLISPNLA
HTPPHPFLSLSPSTVLLWGLQMLRATIPLF
>L3_pol#LINE/CR1 947-4015 [Mammalia]
MVSKNRIWFSGPWLXIPERWAPGXGRSASHEDREERVXXETRRPDQEDFKLKFEGKEKKCPDKTVKPDTMEDXRYDIERR
TTVEEVPSNSQEKITGKEARNNTYGLRCLYTNAQSMGNKXSXLEILTQGGKYDLIGITETWWDGTHDWNTAMEGXTLFKR
NRSXRRGGRVALYVKKXYTCAEIHEPEGRSVXESIWVRIKGERNRSDIVVGVYYRPPGQMEXMDDAFLIQITKLAQRQDX
VVMGDFNYPDICWKSHSAKSRASDKFLTCLADNFISQKVEEATRGTATLDLILTNKEELVGEVEVDRNLGRKCHVILEFI
IAKKGKVKSPHMFQTLQGKADFKKFREKRYDSMARDSKRKMAQEGWEALKNEILITITNDPMRKKRGRAFKKPTWPHRVF
SDVRFQKDMYQKMKGGYVTKDEXRVSQARKNSVRKAKVQNELRLAKKNAKDDKXKAFQSYVRSRRKKKXTGPLLGTGGVM
LTDDREKAELLNSYFASVFSIKENDLQTGKGRTNIVKRELKPKIGEEIVREHLAALNEFKSPGPDELHPRVLKELADVIA
EPLSVIFEKSRRTEEVPEDWRRANVXPXFKKGKKMDSXNYRPVSLTSIPGKILERIIKQMVCEHLEKEAVITRSQHGFTK
NKSCQTNLISFFDRVTRLVDQGNAVDXVYLDFSKAFDKVSHDILVDKMEKYGLDDSTVRWIRSWLNDYTQKVLINGSMST
WREVSSGVPQGSVLGPVLFNIFINDLDEDIEGMLIKFADDTKLGGIANTXDDRIKIQXDLDRLERWAETNKMKFNRDKCK
VLHLGSKNQLHKYRMERIWLSSSSREKDLGVLVDRKLNMSQQCDVAAKKANAILGCINRSIVSRTREVIVPLYSALVRPH
LEYCVQFWAPHFKRDIDKLERVQRRATRMVKGLETMSYEERLKELGMFSLEKRRLRGDMIAVFKYLKGCHVEEGLDLFCV
APEGRTRTNGWKLQGGRFRLNIRKNFLTIRAVQKWNGLPREVVSSPSLEVFKQRLDDHLSGML
>CR1_Ele33_pol#LINE/CR1 1225-5238  [Aedes aegypti]
LTFINPGRKSIRTMEAPYSPNTVPFFLPTLISRPVPVFGCEEGVFQTVSIGKYTCDVNKTLPVKSSNSSNTSPNYICSRS
RHQKHVTIMNNQPSSSIELSTHTESPGCTPASLKGAPNPLVTVEPLLPAFSSHPGPVYEFGGGVFRPAIAGKYTCNKNFN
LPVNPVDSSNAMSIASPPSSSSSSTILSCSSHAEPPGCTPASLKGAPNPLVTVEPLLPAISSHPGPVYEFGEGVFRPAIA
GKYTCNKNFNLPVNSVDSSNATSIASLPXSSSSSTILTCSSHAESPGCTPASLMEAPNPLVTVEPLLPAFYSHPGPVYEN
GEGVFQPAQAGKYSQAPTYALPDATEHSSTLGRQEDIMLPPHAVQSPNADAIEIIENSNVMVGNGADRLLSIYYQNVRGL
RTKIVQLRLLLSSCDYDVLIFTETWLRADIESSEISTDYTFFRCDRNERTSHHSRGGGVLIAVKNRLNCDSIEMTNYERL
EQIVVCIRFQKHSLYIAAIYLPPNSIPELYAKHADAMQFIVEQAEATDIVMSIGDFNLPNLCWQQDDDINGLIPTNVTAE
HEQSLIEAMFAVGFRQINSLVNSNSRLLDLAFINLPERVDLTAPSSPLLPMDIHHPPFILLLCENDELLNLADDENYEVK
FNFEVCDFELLSDIFGSTDWNALLGNTNLEAMLSAFYQKLNSVFGEHVPKTRRNTRSIFNKPWWTPELRNQRNNLRKARK
RFFQSRDDCDRSHLQEIEIRYKTLLLSTYESYISTVQSSLKQNPSRFWEFVKNLQSSNRIPPSVTYNGIEAHNTSEAADL
FAEFFESVFSKVSPVQRSNIFAHLQEHDFSFPDLQFSPDEVLEALRDLDIKKGPGTDGIPPLVIRNCAAALCIPITCIFN
CSLRERTFPAAWKMAYIVPVYKSGSRNHVSNYRGISILCCLSKILEKLIHKTLSNTLTSIISESQHGFMKNRSTTTNLMS
YVSTLFREVEARQQVDSIYVDFAKAFDTVPHIVVIEKFKRLGFPRWLTEWLYSYLTNRYAFVMVNSTRSRTFNITSGVPQ
GSVLGPLIFNVFINDLYSLLSSCNLSFADDLKFYRTISSPQDCIALQEDIDIMLIWCDNNGMRVNSGKCKIISFTRCNTS
YQHRYFIGAEELVRVNSICDLGVTIDFKVRFNEHIGLTVAKAFSVLGMIRRHTNSFTDVYALKTLYCSLVRSILEYASPV
WCPSQVTQILSIERVQKKFLRFALSRLPWNDARNLPSYHERCQLIRLESLSARRTNQQRLFIFDLIKGGIDCPALLELLS
FNAPSRRFRNAVLLYIPNHRTNYGYNSSLSSCLRAFNDVGDKFDFDVTKNIFLNRIRN
>CR1_Ele24_pol#LINE/CR1 1220-5062  [Aedes aegypti]
MSKSTMDAPKPPDTVEPCRCSSIAACSSRQSRSVPVFGTGDGAIHLACPGKYYDISSFSFPKSPPACRNSSRRYRTSPTS
PFNSRAACSHPQGTELDRRAEHNPRCSVDGFFETCSSSQTAMSAEHTRLVSVTSNSGLILKQPDDASSTPGRTVAGIMEG
LHPPSTVAPQQPPLISRPGPVSGTGGGLFRAVNTGKFDLSVCRSILDPFTSFSMPFAPQRSSSSIGRILGRTTSSNMEAP
EPPTAVQLFQPTTDSRPSPVRGCGEGVFQLTVNGKYAPSSNNSLADVVAASSSSSSEQRRPSTSRGRFQAPSRETNASGP
VLATNPSPIVKLPTSVYYQNVRGLRTKTAKLRLALSSCDYDILAFTETWLRPDISNAEFSSGYTIFRCDRSALSSNFLRG
GGVLIAVKKSFQCELVICTGCEHIEQITVRIKLQGCWLIICTIYLPPNSGPDLYSACSSVIQQITESMSESDIFLLLGDF
NLPNLRWQLDEDFNGYLPSNASTEQELALVEATIANGLQQMNNIVNANGNLLDLIFVNLPEHLDLVEPPLPLLAVDTHHM
PFVVLLSTNFPDVSDDQSEDIGFNFLRCNFDVLNAALSSISWEIHPDSSVDYALTTFYNKLKQVILEYVPRKHRATNSVY
NKPWWTTELRNLRNVLRKSRTRYFSSRSAANKSHLRDVEIRYNTLLLATHNDYIARIQSYAKHNPSSFWNFIKRQRSNNC
IPANVEYSGHSASTNSEAADLFAAFFESVFTRVSPVPRHDRFQNIPSFDISIPLPQFSIEEVSQALNDLDVKKGSGDDNL
PPLLFKRCASTLAGPITDVFNRSLAERKFPCAWKNAIIVPIHKSGSRNRVENYRGITLLCCLSKVLEKLMYNILYNAALP
IISNSQHGFMRNRSTTTNLMCYVTALSREVEAKQQVDSIYIDFAKAFDTVPHLLTVEKMSHLGFPGWTTQWLFSYLSNRT
AYVTVNSASSSAFEITSGVPQGSVLGPLIFIIFVNDLYQLLSSCNLSFADDLKLYRVIRSALDCIAMQADVDAIIVWCSD
NGMRINSNKCKVISFTRRNHQYRHEYTAGSAVIERVQSICDLGVTIDSKIRFNEHVAIITAKAWSALGFVRRHASDFTDI
YALKSLFCALVRSILEYAAPVWSPYHVTQTLRIERVQKKFVHFALRHLPWIDPTNLPHYPDRCRLINLETLSARRTQLQQ
LFIFDTICGNLDCPTLLGEVSFNVPPRRFRSSSFLTIPYHRTAYGQNNSFSLCVKAFNDVSDRFDFNLSKVMFKTRIKNL
G
>CR1_Ele35_gag#LINE/CR1 409-1257  [Aedes aegypti]
MSLVCCSCAGDIGDIQVECQGFCKAIFHPRCCAVAADVFEEVMRNNQLFWFCPSCTALMKDMRLRNTARAAYEVGQGHAL
NSHSDIMKNLKTEIMDELKAEIRTNFAKLINSSTCTPKSSKRVGVDPRFTRSRRLFSTVAKSIPNQQPPLLLGTGSTPSP
SLDIVTVPPNQPKFWLYLSRIARDVSVNQICALAKKRLGTDDVQVIRLVGKGRDMSTLSFISFKIGMNMEMKSKALSTST
WPKGVVYREFTDNRTDENFWRPVPAAASDDPLSLSTEDVVLME
>L3_Mars_gag#LINE/CR1 420-1406  [Metatheria]
MESRGNCAVTCIECAMFVFLPQPSDCYLCSKCRLISLLEEKVKGLEECLSTLQVVRENEVFLKETEARLQWERKGSEVEE
GRLDPCQEVGEWKNVTQRRKGRKRTAVXLELKNRFEALPEEEGAGCSEEEXAACPPKNDXVEPQKLSGERSSSKGQRKKR
RVVVVGDSLLRGTEAAICRPDNNNREVCCLPGACIQDITENLPRLVKTDDNYPLLVIHVGTNDTARRNLESIAXDYEVLG
KKLKTIGAQVVFSSLLPIEGKGXRREKLIWEVNSWLRRWCLRMGFGFLDHGLKYRDDRFLARDGVHLTKAGKNVFAXCLA
NLIKRALN
>CR1_Ele40_pol#LINE/CR1 1501-4938  [Aedes aegypti]
MHQATLPGRTTESTLGVASYSSSVAPFAASVLQSRPGPESSCGLAASQSAISGKYNDDRELSLPDTNQIYSTSGYTSSSS
PYPDLTLEEVLHGLAEDISLGTPTATNADSSSFDMRSNNEHRFQHPGRTILSTTGAPLSPSTVVTMQPALDSRPGPVVGC
GEGVSQPVQSGKYTECADSILPDDLIPSSLRIYYQNVRGLRTKIESFFLAVTELDYDVIVLTETWLDHRILSAQLFGSHY
SVFRTDRSALNSNKSRGGGVLIAVSSQFNCCSDPTPVNDQLEQLWVRILLPDRNVSIGVFYLPPDMKNDADVIRCHIESI
AAVHNNLSENDLILQFGDYNQSDIYWAAEADNRLSIDLDRSRMCPASSALLDGFCFHGLSQVNTLTNTTNRTLDLVLVCD
TVLPNFTLLAAAEALTTLDDHHPAIELIVMCPLPVTYEMSHDYTGFNFQKANFESLNVALMSVDWNHLDSIPDINEAVDF
FTNSVLQAVTNNVPPRRPPSKPPWSNGQLRLLRRRRSAALRCYCNNRSQQTKLAFNEASREYRNYNALLYARYKRRTEQN
LRTNPKQFWSFINSKRKENGLPTSMYLDEQSADCASDKCELFAAQFQRAFNNFVAAPSQVHVALDDTTRDVFSYEMFEIS
EREVASAITKLKPSYTPGPDGIPPALLKRCSALLIPLVKLFNRSLGCRVFPRSWKMSFLFPIHKKGDKRSVSNYRGITSL
CVCSKVFEIIINDSLFNSCKQYISSDQHGFFPKRSVTTNLVEFSTQCIRAIDAGKQVDAVYLDLKAAFDRVDHGILLQKL
RKCGVSDSFIDWFESYLTNRSLCVKIGSNESSSFTNLSGVPQGSNLGPLLFSLFINDASLVLPPGTRLFYADDTKVYMIV
DSLDDCHHLQRLLNDFEAWCSRNCMTLSIEKCQVISFNRKRNPIHFQYTLSGTAIERVQRVRDLGVWLDEEFTFNYHFND
IVSRANKQLGFVLKVTEGFSDPLCLRSLYCALVRSILEFAAIVWCPFHASWITRIESVQRKFLRHALRNLPWRDPSNLPP
YEDRCRLLGIDTLENRRCVSQAAFVAKLLQGDIDSPSLLADVSIYAPERNLRRRNFVSLGSRNTLYGQHDPTRYMATKFN
EIYHLFDFNITMTTLRNRFAEYFRHS
>CR1-17_BF_pol#LINE/CR1-Zenon 103-3549 [Branchiostoma floridae]
SVCRVICSIVGTELNQYRAAIGTFYNIRYGLRLLSSKFCYIGINTISFILSIFYSNFLLLLIVLSNDIHPNPGPIQPTGT
SKCLNIFHANVNSLIAGTKLDELATIANRFQIEIIAITETWLSGAIPSEDLVIDGYQLPLRRDRNRHGGGVLVYLSTWIP
FKRRVDLEPQLFESIWIELRVKSFKVLFSVYYRPPGQDATTVNEFMDSLSNSVQLARESHPDAIVIVGDFNAKHQQWWHL
DQTTSVGAKLFQSTQLLNLTQIINEPTCDLSQNPSLIDLIFTDAFNYVDKTSILAPLSGCHHSPTICSMLFSVYFPKPYS
RIVWDYRNINFDKLSEFCTHPTWCDIFLCSSVDESAVKLSQLILEAKDLCVPSKSILVRPKDKPWITRDLRTLMRLRDKL
HKAAKLSKSSTNWAAYRRVRNRLSNAISHSKSTYYKRLINSLDDPSTLGKKWWHIVKYFYKPKVTSTIPPLKEGSSFILD
STEKAELLNKYFASQSTVDDSNASLPPFYYLTDQRLSEITTSAEEVCLFVGNIDIHKAHGQDNIDNRFLKVITPLIADKI
AYVFNLSLCHGTFPEIWKYANVIPIFKKGDPQDKCNYRPVSLLSSLSKVLEKIVYKHLYNHLTQNSLLYRLQSGFIRGDS
TVRQLVYFTHVILEALDSGREVRSVFLDFSKAFDKVWHTGLVYKLQKNGIEGPLINWLYSYLQNRFQRVVIDGQSSNWCG
ISAGVPQGSVLGPLLFLVYINDIVEGLASQPMLFADDSSLLQVIDNPINDALSLNSDLEKIHLWSTNWLMELNPAKTEEM
CFTSKRLYPVHPPLFLNKTMIKSVSSHKHIGVIFSSNMSWHQHIESIVTKASKSVQLFSVLKFKLSRQVLEKIYKSFIRS
LLEYADIVWHGCTIEESNLVERIQYHCSLIVTGAIKGSSYSATRKELGWESLSDRRHIHRLLLFHNIVNGLTREYLTTLL
PYAITVICNYDLRNSRNLRPIKFSTDRFGKSFTPYSITAWNNLDLTLRTLDFSKFREHLFKTIRPPKFSHFSFGSRHSCI
LISRLRMGTCSLNYSLFTRGLVSSPACSCGCPYETISHYLLHCPTYNYQRSVLIGKLSGLLVHILDFHSLANNAKEMLIL
QGSSFCSFNVNCRIIEATHVYIATTNRF
>I-1_DEu_pol#LINE/I 1473-5144  [Drosophila eugracilis]
MPIKILQWNINGIFNNYHELSILINEQSPDILCLQETNLPCNFINFVCPKGYIGYFHNLPQNISAKQGVGILIKQNLPHS
HQNIDSNILCSVLELNVSIGIQIVNVYIPPNQSFTTSDLSAILDRVRHPYIVLGDFNSWSPLWGSSQSNTRGKKIEKLIS
EQDLIVLNNGSPTHLSTHNSLTHVDLSLITPQIAHRCSWSILSNLHGSDHFPISIDFSIHFSTSPTPPLPKFKIDLANWD
AYRSMCERRALDWKSGCLNHQVAQITKAIRSAANCSIPQTKRVVRKAAVPWWDYNLQRLRNEKQQLFAVYKARMSDTNLI
NYKRANAVFKKSVLVAKRTCLENFTSRISPLSSSKKVWSDVKRLAGVPPQPFRFLKCDSGVVTGSEDIAEEFGHLWSNYS
ADSNFSAEYVHQKDAYLSQSYLLTALSSPAKCLEKNFTLAEIEYALAGSKGKTPGADRISYPMLKEMPLSLKTRLLGVYN
QIFNSGKYPHSWRSATVIPIPKPNKPPAEINSYRPISLLSCLGKTIEKMIARRLMWFITRNNLISQNQVAFKQKHSTMDA
LLRIQHFASNALSTKNHVSILATDFERAFDRVGIHAVLSQLERWGVGPRLYNLIKAFMTNRSFRVRVNNNTSNTHSLYNG
IPQGSPLSVVLFIIAFDKLNCILSRHKDIQLSIYADDAIIFSKLKNVNIVKDKFVDVLSEIDSWGAISGASLAIEKCKLL
HICRKHRCTLSHINFKNKRIENVKSLTILGLTFDTKLLFDQHCIKLRKQLESRFNIIKFLSSKYTNIHINTLIGITRALM
LSKIDYGLPVYGWCAKSHLNKLQAPYHGAIRRAINAFPTSPTACILAESGLPSIQARREEMTMQLICKMHLTKNALLRKD
FSAMFKQKRNYKVISTLRRCASFTTQLGLPPPNHRNTAKLPAYWNSTKANVILDMYNGSKNNTTRAEFQTRFRCLQEKLG
TKSWLYTDGSKTDDDTTFAVVDSNGKIISGGMLPPYNSIFTAEAFAILQACLFATKHSGHFVICTDSLSTLSSLRNWGQT
DPTIVEIRRLSSFNNITLVWTPSHQGIHGNELADQAAKDMRLKPSFLFTPFNNKDLRNRIRLHLKDKQFREWDLYDHRYF
SINNTFTKISLPGHLGKRACSTFIRLRIGHTRATHEHILTGTPRPVCRCGEHLEIDHLLNSCRLLESVRALIFGQKKPSD
SLNIISQETIMNFYHFVIRTNLNI
>CiI_gag#LINE/I 276-1499 [Ciona intestinalis]
MEMDVSAISESATIGNKSLDTEARGIKRPRDGCMSSDLHNERQELKVILHGVEKQLRAFSPLLINKLIIASIGEYRDIKV
LRSGDLLLXCVNNGQRVKALALKCLQNETTSIDICVQAYKPSTGCKCAXKXVPRDLTDDEIASSLXDFGVVFAKRFFVKR
DGNPTATTSVLLQLTTNNFPQYLTIGYIRFXTVAYSPPPLRCFNCNRFGHISKFCRSKIRCAKCGGXHEYKNCSSGTRCC
NCHGNHSAAYKGCPKYKREIKIKQYIVDDNLSYXDAXTKLNLAQAPAVRKSVHEVSYSRNDFPPLQSISLPQIVSTSNQP
SPNHIRTSVPKSQPXSNDDRSIIVTAXTLSRFMKDMIALITTALVNNDATNLCLDVQNTCKAYFGEISXKIQHTYSNTME
PKQSHSI
>I-1_DYa_pol#LINE/I 1477-5130  [Drosophila yakuba]
MLKVIQWNMNGYINNYNQLQIIIKKHNPKIISIQETHLHSTQNIPIPINYTIYHENTATNSFGGVALLVHNSLQHQNVQI
SAFDFDTIAVTIHSKFKFTIXSSYIPPNKPFTIQNLRNIYDNLQPPLLITGDFNSWHRSWGSQTNNQRGNTLFKFINQNS
LVTLNNGSETHFTTHHTFTHIDLSIXSPPINLNSKWYTDSSLSGSDHYPIHIDLFEEHNMNNPIERPRFNLKKANWPLFQ
EIADKLSIEKPPSSNVNKELAIITRIIIQSANESIPQSHQSRRQRNVPWWDQTLQQLRNEKQTAWKNLNRNTNMTXVLAY
KKANAKLKREIKIRKKSATESFTTEISPSSPIGKIWTKINHFCGLKTRHHIHCLTDPNDTTQSIMDXNEIANXLCTHWSK
ASLDXNFHTAFIQRKSNPIPHTHVPSPTALSIEQDISLTELLAALNQLKGKTPGRDRISYPMLKNLSANLHKRLLKLFNN
ILSSHIPQQLKVSSVIPIPKPNTDKTNINSYRPISLNPCISKVLDKIIAKRLWWLASNSKLLDNRQMGFRKGKSVSDSLA
MLDYQITASLSKKSHASIISLDFAKAFDRVGIHSIIDELIAWKIGPRISNYITYFLTNRKITVLSNKSYSNPQPLHNGIP
QGSPLSVILFAIAFNQLNKILAAHKQMDFTAYADDFTIIYNLGKKQNNLNLDALLNDINQWCNYSGASLSTNKCKHLHVC
RKRTCNFTLQTNDTPIQNVTSLKILGITIARNYRWNKHIENLTLELAKRLDVIKCLANKKFCCNTNTIIYVVKSIIMSKI
DYGVHIYGNAPKSTLSKLRTIYHSAIRIAFNAFRTTPINNLLHEANILPIEHRTTYATQKNIKIIINSKFSPIEKIYNKI
KNSKRIPKVPSSLHNTIEQLKKVNIYVSPETSRKEKTPHWLCSNTSTNTXLHTSSKAETAPSIYQQXFNELKNTLAGRHF
LYTDGSKSASGVSYSVTTETEIIYHHILPQYSSIYTAEIAAILTACNHASKQRGKFAICTDSLSALKEIENIKSQNYYTT
SIRNILNKYKRNKILILWVPGHCGIPGNELADETAKNAHNFPLITQKNFNTSDILEHIKXNTVTFKTSIFNNSSIHYKNI
SHDSTPTKNISRSDSIKFTRIRLGHTNLTHSHILNKTPPPICTTCNTNITLQHILLDCPDLQQNRSNLLKQTIREITSFE
NIHQTIQFLKNTXLYHTI
>I-2_NVi_pol#LINE/I 2337-5591 [Nasonia vitripennis]
MEDTIQGNPNKCKIKNNLKILQWNCRSISNKTDFIKNIADNYDIILLSETWLSDQKKFTIKNFNMVRRDRAENNNNLNKE
HGGGVCILVKSXLIFEEYKPLYNSPESLETVAVTVHLNNEEEILISSIYRVPGKVTTAEEWYKFFQSIDKIKYKIIGGDF
NAHNLLWGSTNNCKTGENLLEIIDDKDLIILNDGSMTYSKVVNNNITFSAIDLTIVSSDLFLQSHWKTLDDKMYSDHYLI
EIEINKDIKICPTASSHKIKTKSINWTNFNLLVEAIVDTQYPIDQFHEFSNKPIDEKYNILMNILISAINELKPKPKKSH
NKEKINEINNPSDDNSTMNNHPCYKVYSPLITDNRTQFIKNKLKASHIPQSIKPPWWNEEAEEINNTRKNLEKSLKQNPS
LEQLKELKDYEIESKFKLKEIKLNSFKKYTETKLSREANINEVWETIHKFNEKKRNNPIYLDSETINNMHQFISDFCPQT
ASYNQPPGSIENIEAEINSDIDSPFNLKELTIAIESCNKKSSPGLDQIDNIMLNNTPNNYRALLLHTINDIIASGRFPRE
WKEFLVMLLPKKEKNKFRPITLAPCMLKLAEKLIQTRLIYYLESNALLPDSQNGFRKAKSCATSIAYLIAQIHKAFIENS
HIITLLIDIKSAFDMVNPNMLQNILEDLKIPIKTRTFIFNLMTNRNLYFEINHKLVGPFYRHIGVPQGCVLSPTLYLIYV
IYLNRHINPKNNIIQFADDTIIFTNNKSVEEGLXTLQNNTSEIINFFQSIGLDIAPNKTQLIIFSNKNIDPNISITINGH
KIKNEQAVKYLGVWLDSKLNWNTHAQNLIEKIQKTINIIKVLRTTWWGGHPQVLLNVYKGLVRSITDYNCFCINIKNPKL
REKINKLQYKAIRLALGYRNSTPINVMLAESKEVPITTRTEYLADKLAVKIISIESDRLSNMLCELFVLARNKNKIFTVS
SFPLFKSFIHYFYHRGHFIKKFNLPLPYPYKLETMLNDKEDEIISIKEGSIIQKSENPNTAFEEMFYNNPSEETVDFFTD
GSKTEDKNHTGAAIYSPYNNLEKKFKFNKIASIFTAEAFAIFLKN
>I-1_NVi#LINE/I 1890-5805 via tfasty with Nimbus_pol, 5 frameshifts and 1 stopcodon. [Nasonia vitripennis]
VNIDLKEIKILQWNCHSLKSKLPIFRNSIEEYDIIALQETWLDELSNPKIPNYSIIRKDRKNSYPSGGVAIIIRNNIPFK
IIENIYYSEKTMETIAISIPLIQHNNDTNEENSLLIASVYRNPAKQTSINEWNSLFNSIKNYKNIYIGGDFNAHHFSWGS
SKICNSGEFLVESLLDNNLHILNDGTHTYYTSKTITLPNNSVVQKIISSPLDLTLISTNLLHKTTWKIQEDNMYSDHYPI
LCTISLEIETIPFNSTHKISHKNVNWKLFSTLLKNYFEKNHQTIENMTIDEQYNFLINLCTTSIIQLNTKNNSKKTYENQ
ALFSGDIFNTSPTELISQYHPSLVKTFNKRPIKAPWWNQVCTELARERRLASFKLLKNPTQENLDDLKQIEKSTRKTIKQ
NKKDSFREHVNEIFTLDTDSKTIWNFIQSYKNITNIKPEYAPNDIEILENINQFIEEFTSPAQSNNTDDDQYSIEPNNNN
PYQELDAPFSPIELNLAIKEVKKQSSPGLDKVDYEMIKNTPDCFKELLLKLIHFYYTNCNSPISWNKFLIILLPKDSKKN
YRPISLASCLLKLTEKMINTRIHFFVEKNDLIPDTQNGFRKAKSCHHALAYILTDIHLATHKNLYTLCVLIDIKSAFDNV
CPKILDKILKDLGIPYKTRSFIYKLISNKQLFFKIGNKLQDHIKKNGVPQGSVLSPILYNLYVSLLKKILPNDIFLVQYA
DDNLIYCIHQDIPTAIEKLQQALVTFNAYFENLKLQISPQKTKFIIFSNTNMQTNGNHSIEFNDAVIKESKSVKYLGMIL
DNTLSWNEHAEHIIAKSTKQLNILKFLRGTxWGGHPKVLKQIYLSLIRSSLEYGLFLTHIKNSNRRSKIQKIQNQAIRLA
LGYRRSTPINVMHLESKIPYFNDRIRYLSDNFILKLIAHDTPLKQKIENLSITIANNDRLNIKNNFPIIRSYNEIKSLVQ
NKIQRHLHPIPYDYTYEAIVEQPDINVTSGLHIKKSANPPQEFKDNHSDTIFTDASKMKNQEYTGLAMFMASNNQAYQFK
IHTEASIFTAEGLAIFLSLNNIINSNFKRAYIFTYSLSILSALKDYTPNKSRNTSHIILDIKTLLNKCSQENIKVTLIWI
PAHINIKYNETVDSLAKNAIKDGTNTIYLLPFSDFGDKIKQKLILNTQQLITDQGTYKGTHYFDHYYKDNEAKPWFTKIN
LPREHITTINRIRPNHYNLSASLFRKNIIQSPTCECGYESENIDHILWDCPRFSNQRYSLINKLNHYHSKKKKNTPKDTT
SLLKNPNEKPARIITEYLKRCNLQI
>TRE3A_gag#LINE/DRE 170-1423 (TDD3 similar) [Dictyostelium discoideum]
MNSYADAAKMANPSTHMDEASENFIKEFSTKTAEIKETYPKLSIGLKDISKYCETILNMTALSTYEKNNGFYPITLEFPK
MDLMGLEEMRKTLSNYDIPIDKIYIGKGTRKTIHLMIKNEQSLLNIIRDRSKLGTFITSSRDYHVLTGRVRIPREKAGIV
DALIKTAFAEEIPYAIYHTIYSTDHLLVFGLIECKIGDQMKSGQHNTEIANFTIRTATKTYSSQKKNKKVESNNTEEPLE
DEMTDDPPNIQNRIAIKSSQPKPQQQTNNPANNKSDKQSTQEKKAQSKKSSQPLPPKNQAESQSVKPTTTTTTTSNAIQK
DNANKTSTNIHSSSENREKTPNIPPSHKRKNEEIHSNNEVTQLSPTINRSNPYIPSTPKTPVKKERKGIIESFIESIYPS
PSKPQLYDSQEEIDIIS
>Cnl1_pol#LINE/CRE-Cnl1  From retrobase; includes  gi|58262638|ref|XP_568729.1| retrotransposable element slacs 132 kda protein (orf2), putative [Cryptococcus neoformans]
MSLQRAKNARGDPGRCNLCSADYRDLKDHLNKQHSTHFFVPSDLRGSSLVACPRCGTPCSAGTGLSRHQSRYCGLTAPRI
RRNRVGNSTNTSRCPPSNTAASPIVPSPSPERPSPPQPAEVVASLEPLSEAEEVLEVAQVDAETVDTLEGTRRAPESVPR
SAEEGSTRVRELNMTAPEEEHRGEEESSHTNPTAPAGLENAVSSTLGPSPGTLPSLLPSQECANERFLYLAHLPVRSKPL
PNNLVTDFMDAAERCALAYIAQPSDSTLLAFLALPKVGLTQALAPEQPLRPSTFLKQFPHIPWPEQPPARRPPSNIRPDT
TKQVIKLVENGRLGAAERVLEEDASVAELDQGVIDQLITKHPKGPSCPFGNAVGPTPGKAPDIDTIQKALDSFKPDTAPG
VSGWSVPLLKTAAKREPVKQFLQLLCAAIANNTAPGRSMLRTSRLIPLKKDDGSIRPIAVGELIYRLCAKALIISHFQPD
FLLPFQLGVKSIGGVEPIVRLTERVLEGSAGAEFSFLASLDASNAFNRVDRAEMAAAVKTHAPTLWRTCKWAYGDSSDLV
CGDKILQSSQGVRQGDPFGPLFFSITLRPTLNALSQSLGPSTQALAYLDDIYLFSNDSQVLSKTTQFLADKQHIIKLNEK
KCKLISFDEIRQEGFKMLGTMVGGKEKRAEFLEGRIRKEMAKVGKLKDLPHQHALLLLRFCIQQNLRHLQRSLRSDDLVD
LWERLDTMLWEEVKRMRMRQREDTAEEEALGRSLTKLPARLGGLGLLSFKDVAPLAYRSAAEASDTLLDNLGLLSSPEEP
PTPIPQRTRCAELWESQQEAILHNLGDTERKRLTENASRLGRSWLSVIPYLQPLRLSNVEIASGLHDRTLVGSSIPVCRF
CGSDSPLGHDELCRARNPWTQRRHNAINRVIYQHLKQIQGATVEIEPHTLSGQRRNDLRVRGSSALAFTDYDLKVYSLGD
RDARSTVTPCAPNGKLADFCLDRCVNWLDKVGQVVSKNAPKVTGGVFKPIILSTGGLMSRSTADEWKDWRDAMPVGGFEK
MEKRIGVELVKARARTLVL
>58267822_Cne_pol#LINE/CRE-Cnl1 gi|58267822|ref|XP_571067.1| hypothetical protein CND05380 [Cryptococcus neoformans var. neoformans JEC21]
MPGKSIGEPGENFGVFPEFFYGDCFPWRARRQFLRLEPVQEVGPEQEAEPEQEVEPEQEKENVESGGNLATAPVVQMNQE
VDSTVSAPLGPCPRKSIPFTLPDQGNTADRFRYLATIPNRKKPIPGRLHPAFQDAAARCAEAYLTRPTEANLLNFLALPK
VGLFPATLEKKPALFLASYPNVSWPTPKPKPQNPTTASDTSKTATKLVESGHLGSAARILAEDAKAMEIDDRVLEQLESK
HPRGPEKPFGRKAGPKQGKNITEQSMREALDTFAADTAPGVSGWTVPLLKSAMHRPSVVKFLTTLCTSITSSTALGQSML
RTSRLIALKKDDGSVRPIAVGELIYRLCAKAILRSYFHTDFLLPYQLGVKSPGGVEPIVRAAERALEGSLGAEYTHLASL
DATNAFNRVDRKVMADAVEKHAPVLWRTCKWAYGEPSDLICGDTILQSSQGVRQGDPFGPLFFSIALRPTLHALSIALGP
DTQAVAYLDDIYLFSNDPNVMQRTQAFLADKENVIKLNNNKCKQVTFTEMAENGFKMLGTMVGPKKAREEFLKDKMESEA
RKIARLKDLPSQHALLLLRFCIQQNLRHLQRSLRTDDLKEYWEKMDQELWDEVQRMRTRQTEGSEAENMLGKKLSHLPAR
FGGLGLLSFTDVAPLANKAAAAQADKYLANIFALDLPDEAPTPSQRELCSSMWEHQQTAILEGLNDPGRKRLIENASGIG
KRWLNVVPYFQPLRLSNQEVATGLHDRTLVGSSLAICSFCGSDSPLGHDELCRSRNSWAQRRHDSINRIIHRGLQSVEGA
VVSIEPRTLEGQRRNDLRVRGRCGLHATDYDLKVYCLNDRDARSTTSAKPAASSLTNHVLNRCLSWLDKVSENATRKAPA
THSGLFKAVVMSTGGIVSRETADEMRRWRREMGPMAFEGMMKKISLELVRARARTFAM
>R4-1_TCa#LINE/Dong-R4 415-1608 [Tribolium castaneum]
MKAINTFAVPVLVYSFGIIKWTNTDINNINIKIRTLFTRFRKHHPKSAIERFSLSREYGGRGFLNLQNLHTRQISSLKKY
FLNRSNKNILFKAICLSDHNFTPLNLSNPNINEIISDENSIIETLKEKPLHGRFFKELDNSNYIDKKASHLWLTKTNIFS
ETEGFIFAIQDQVINTKNYQKFIXKKNNDVCRLCGTHSETIQHLISSCQVLVASDYKVRHDNVAKIIHSELAFNSGLIQT
KSPYYKYEPDSFIENDNFKLYWDRTVLTNLTITANRPDIIFISKLERHAFIIDIAVPNTHNIQETYNTKISKYMILASEI
KNIWNLEKIKIVPIIISAVGVVPKNLKQNLELLKLSSNLIVEIQKSVLLKTCNIVRNFQHHYLIAISVMVISCLTXV
>DRE_pol#LINE/DRE 1701-5159 [Dictyostelium discoideum]
KSTPNKTIKKNTIRIGVWNVQGSNTIQSASIINTVLDNNKLDAALLTETNIKTNKIYSINQQYKNKITHHAPIDKTGQGV
SQIIINTQIKTTTKTINERIISSEWMIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNK
YIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNL
ETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRA
IFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLY
QKRECNEDTHHELLKTFNKRIEQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFW
NTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKLLNKIISPFQTGFVPRRLLHDNIITLNS
TIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGT
KQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSC
ITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTP
QHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNN
NNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKE
IKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQI
ALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKL
LQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK
>DINOLT1_pol#LINE/DRE 1694-5128 [Dictyostelium discoideum]
MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKN
LEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTEN
ETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKM
NSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETI
SNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEK
ECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNE
IPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAME
KSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLF
AIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIK
TKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLE
NVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKC
WKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKG
RDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIG
AIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNW
NSKLMTIKIPEHFIPYCSYNTNYS
>3461840_Ath_gagpol#LINE/L1 gi|3461840|gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase  [Arabidopsis thaliana]
MSTAMVVESTSKSSEASPETTKPSYSSIVQNRPTLSKHEFNVTMVNGDSIVQVPNEIFEDSTPLWDDLLIGRFPQISPHI
AKVHVIVNKIWPLGDKTVKIDAYVVDTKTIKFRIRESSVRARVLRRGMWNIADMPMIVSKWSPVAEDAQPEIKTMPMWIT
IKNVPRSMFTWKGLSFLASPIGEPKKLHPDTVLCNSFEEAKVFVEADLTQEMPKQFRFKSETGVDAMVEYKYPWLPPRCS
SCSKWGHIQEVCLTRPSPNQLSTPTEIETEDKTEPPLMKEKPLEILSKSPSATLTKTLNGDSHTQKVPMKNPTVLQNKGK
EVAEENEENLKDEGPWHTVSPAKVGRQRSPQPQEVVNHASPSRFDVLAVEEDTADTNGHEEGEIVVLSQQLNDNSDSVGV
QGTRPYIPRISKSQHKVVKSSANQNTKGRIWVVWRDNARLTPVFKSSQMITCSILLEGKEEEFFCSFIYASNFVEERRIL
WEDIRSHHDSPLIRNKPWILCGDFNEILEGGEHSNYDNSPYTPPGMRDFQEIGRLMLEAAATGGRKPFKFVNVLTKLPQF
LPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLGDLPKRTREAHILLCEKQATTLANPSQETIAEELKAY
TDWTHLSELEEGFLKQKSKLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQSG
DFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKG
FLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVK
DYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALS
PYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTI
YLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIAN
FWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWV
TWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHLGRLLDITGTRRVIDLGIPL
ETNLETVLRTHQHRQHRAAIYNRINAEIQRLQQQEREAGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWF
PYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNRLF
TLLCTSNLPRDHLFLFRYVFQASIYHIWRERNARRHGEISSPTNRLIKLIDKTVRNRISSIRDTGDHNYNDCMQLWFSMR
QPHSSPQPL
>Vingi-8_AMi_pol#LINE/Jockey 3-1684 via tfasty with Vingi-1_PMa_pol, 1 frameshift. [Crocodylidae]
HLLKDIGQQILPEFLPEFGPHERRWLAKLFTNIHSHIPKIWKEEKLLQFPNRETPGDAKSFRPISLLCTTFKLFERVLLS
RISPILEPRLPADQAGFRPGRSCCDQVLALTSFTEAGFQRKQKTRATFIDLTLAYDTVRIRGLMVKLIKTIRCKKIITIL
FNILSNHKLRVCLDGKISRPRFVNNGLPQGSVLAPILFNWYTHDIPHTKSRKFIYADDIAILAQDSDSSIIETTLSNDLA
KLEDYFNEWYLKPNPDKTVYSFFHLTNAQVNARLRISFCGKPVNYEPNPKYLGVHLDHSLAYRHHLQITKNKLATRNNII
SKLAGTSWGSDAEVLRTSALALVYSAAEYCAPVWGRSTHTSLTDSQLNETMRLITGTCRSTPVPWLSVLSHIPPPDLRRK
QATLRVYKKLLTFNSLPIFEELNDPPRPRLKSRRPFWSAGKELNDENFDIKEKWIQQWNTIDIINTFLITDPTSKPPGFA
LPRRSWTTLNRVRTGQGRCNYLLHKWNFIKDPKCECGEIQTIAHITEECPIYHFNGCIEDLHQATDDALQWISNLKLSL
>4538901_Ath_pol#LINE/L1 gi|4538901|emb|CAB39638.1| RNA-directed DNA polymerase-like protein  [Arabidopsis thaliana]
METKNQDEFISKTFDWMGYAHRFTIPPEGLSGGLALYWKENVEVEILEAAPNFIDNRSVFWDKISSLGAQRSSAWLLTGD
FNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYSHFIKSRLDRALGNCSWSELFPMSKCEYLR
FEGSDHRPLVTYFGAPPLKRSKPFRFDRRLREKEEIRALVKEVWELARQDSVLYKISRCRQSIIKWTKEQNSNSAKAIKK
AQQALESALSADIPDPSLIGSITQELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEF
HEEEQIASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAY
WDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSA
FVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLI
NGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGAL
SNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSW
SIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIE
AKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSP
QTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRKHLPQYEDQIRKITINALPLQDSLVWLPVKSGEYTTKTGYALAKLNS
FPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCGQTESSLHLMLLCPYAKKVWELAPV
LFNPSEATHSSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVLKAILDARAWMEAQLLI
HHPSPISDYPSPTPNLKVTSCFVDAAWTTSGYCGMGWFLQDPYKVKIKENQSSSSFVGSALMAETLAVHLALVDALSTGV
RQLNVFSDCKELISLLNSGKSIVELRGLLHDIRELSVSFTHLCFFFIPRLSNVVADSLAKSALSVILSSSVSGG
>57863897_Osa_gag#LINE/L1 gi|57863897|gb|AAW56928.1| unknown protein  (one ORF) L1_Td-like [Oryza sativa]
MRGQMNKGGKLQQYRPVQKEKNQTEEKIATSAVTPQTATQQPTPPPNSRTGMQTNPQRIFCHRCKGFGHMARDCSNVVFC
INCAKPTHRTEDCIYDKQPRPMAKLVGYGAPGLGCILIQNTKPDPPKEHNNPLAMISTVFGGELTEAQLEQGFTQQFKWN
WVWKAKAMPNGSFQMRFRNKIKFDELANFDYFNVKGTDVQVNVKEWTQKSEAVGKLHIVWVKITGIPEEMKGYQALYEIG
SNLGPVLEVDMATFRASNVIRAKVGMMELGVLPLKLVLTSPKGLLFQAHFSLEEVVELGWFSDQLDDTFEKIEIQENTLE
GSSQREGKQVVVVDPMTEDHHVSKTGNGLLKFVRSKSWCQN
>31126782_Osa_pol#LINE/L1 gi|31126782|gb|AAP44701.1| putative reverse transcriptase [Oryza sativa]
MGAVEEQLPFGMDDILQHSDINIRNFSLSVRLTQRSSNTAFLLTNVYGPTDDADKENFLQEMCEVAPSGQTPWLIMGDFN
LIYEARDKNNLNLDRRLMGRFKAAINRCELRELRLQNRRFTWSNERDAPTLEKLDRIFCNPDGDMLFSNHNLQALSSSNS
DHCPLLLSPTHQLLRKPTFRFENFWPRPPGFLDTVQTAWSQPVSASHPVKRLSSKLKATAKALRSWSNRILSDSRIQFHL
VNELILRLDIAQENRALSPLEISLRKDLKLQILGLAAVEKARRRQRSTLTWLKEGDANTKFFHLKVNACHRKNFIHKLHR
GNVIPETHEAKERALHEHFSSLMGQRLPRSCTLNWEELHLPQVTPEDLDSPFTEEDVWEAIKRMLAEKAPGPDGFTGTFF
RCCWEVIKSDIMELLDKFHSLSGGNFGSINRATLILIPKKNDACTMGDYRPISLIHSLAKLLAKILAIRLSRQINKVISQ
AQSAFIITRCIQDNFLYVSNLAKKMHRSKQPTLFFKLDIAKAFDSVSWEYLLTLLEKMGFSTRWRDWVALILSTSSSRVA
LNGIEGERIDHHRGLRQGDPLSPYLFILAMDPLHRLLKIATDEGLLSDLADRSARFRCSLYADDTAIFIKPSRQDVDSLI
SILNNFGSATGLLVNLHKSSVIPISCGEIDLDEMLHNFTGPRGTFPMRYLGMPLMISRLRKVHRQYLIDKIKARLASWKK
KLLSAGGRREPLKYDGLGVSNLTKMGRALRLRWLWYEWTSPDKPWIGMPTPCDEQDNELFAASTSVTIGDGRKALFWESP
WACSSTLKAMAPNLFHHARKKKRTVAEALQDNKWIDDIRYNLTTVLVTDFFKVFEIIWTSGITLTQDIEDNIRWKWTTSG
VYTTKSAYQIIWTADRLQQREWPNNYFCQLCFRNLETAHHLFYECPITRKIWDAIATRLGMPQLRPQNWSKTTILEDRWT
QTVSTMPKEKRKGAKSILILLSWEIWKERNNMVFKNIETATQGIVEKAIDEIWL
>Vingi-5_Crp_pol#LINE/Jockey 6-2771 via tfasty with Vingi-1_PMa_pol, 5 frameshifts and 2 stopcodons. [Crocodylidae]
ASINHSTYGVAIYIKNNIDNYKVISTSCTEDIYIVSVQISDMTIINVYKPPAVAWPAPALPPLHHPSIILGDFNSQHSLW
GYRHNDRNGIKLLDWMEGEDLVLVYDAKDRATFHSARWQQDYTPDLCFTMQNSQQHSPPIHRKVLDNFPHSQHRPILYTV
GIQIPIIKSTPKPRWNFNKADWISFAKQTDFNIRWIKPTSENYVRFVGVIKGAAKRCIPRGFRKEYIPGWNEDSDCLFKE
FKENGDSTTATELLQSLDKAQREKWIHTMENLNFTHSSRKAWAVLHQLGSSTEASRPKTHIRLEAIANHIIALSKALTDK
LFTRQVKSCLKAKKHSVASSSSFSQPFTVHEMQKALRAIKEGKATGMDEIFPEFLKFCGPKTIQWLASFFTNILETGKLP
ALFKRTKIIAIVKPGKDPNKAENYHPIALLSVTYKLLERLIYNRIFQTINEHIPPEQAGFRPNRGCCDQIMALTTNIENG
FEKSLKTVAVFLDLLAAYDTVWRQGLILKFLGIIPCLKIANLLDNMLSNRWFQIFSDNIKSRPHKLNNGLPQGSVLVPLL
FNLYIHDLPGTSSRKFIYADDSLGMQQSCFSRAEIILTSDLNTLDTYFKQWCLHPNPGKTEVSTFHLNNKQANYQPIIVF
RNQLLHYNGTPKYLGIILDRTLSYKHHLTMTAAKLKTRNNLLQKLTGTSWGADADALRTTALALVYSSAEYCAPVWLNSA
HTDKVDIQLNQAMQIITGTIRSTPLQWLPILSNISPPLRRKNALTKLWTKIKNNPQLPIHEDLLNPPHPRLKSRHPAWRT
AIQLEQDSFNIQDAWMQEWLNSPPNTEIIITNPTIRPAGFDLPRHLWSSLNxIRTGHSRCGFLLHQWGWTSSPNCHCGDP
FQTLNHITSECPLHAFNGTLLDLHNTTPEAISWLxNLDIKL
>Vingi-1_Lch_pol#LINE/Jockey 1-2889 via tfasty with Vingi-1_EE_pol, 1 stopcodon. [Latimeria chalumnae]
CEYLERLLKKHSVDILVLEETHIEHTHLFDTRGCITGFDLIACNNHLKYGLACYVKQDIEDCTELKHTSIAGVFTTAILV
EELTITNVYKPPLVQWPDPPLPPSQHPSIHLGDFNNHHTMWGYEDDNYNGVAIVQWASLEDKFLLFDAKDRGTFHSSRWQ
REYNPDLCFLSKDSKGNPIIASRTVLDDFPNSQHRPSIINVGIEIPVITSTPEPRWNFKKADWETFQKSVDTNIRWIPPT
TDAFNRFIGIIKAAAKRSIPRGFRKTYIPCWTEESEALYQEYSLNKNPATATTMPESLNSATRERWKSLVEETNFTHSSR
KAWALLRQLGGANPXYKHRTTIRADAIASHLIQTSKAPVDKKFxRQVMRQLSTNLMAAPRSSTMSDPFTLNKLNAALSAT
KSGKAAGPDSVYPEFLKALGPKAKRWLTSFFSEVLATGKIPSIWREAKIIAILKQGKNACEASSYRPISLLCTCYKVLER
LLRHRLAPIIEPTIPKKQAGFRSSRNCYDQVVALTTHIKASFQHQLKTAMAFVDLSAVYDTVWKHGLLSKLSTILPCRTM
IHLLNSMLSNRHFHVYTSTKKSRYRTLNNGLPQGSVLAPMLFNVYTSDLPETQSRKFVYADDIALATQNKNLSATEETLT
SDLQRMEAYFRQWRLQPNPQKTVTSTFHLNTHQANQALKVSFCGTEVNHAKNPSYLGVTLDRTLSYRQHLQNLGKKLKSR
VNLIQKLAGTTWGADAQTLHTAALALVYSTAEYCSPAWLSSPHVKSVDVQLNSTMRIITGTLLSTPTPWLPVLANIAPSH
LRREYAVSREYNRYTSKDMPIQADLNNLPPTRLKSRRPFWTVAETLHRSPLSLNDRWRNAWKNCDIPNGFLVEDPTVQPE
GSNLPRKQWTTINRFRTGHGRCCHLFHKWKIKASPSCDCGAPNQTLEHIIEHCPRRKFAGSLQDIHAVTPEALAWISDLD
IDI
>Vingi-1_Crp_pol#LINE/Jockey 2-2970 via tfasty with Ingi-2_SPur_pol, 1 frameshift and 1 stopcodon. [Crocodylidae]
HHKHGLLLEPALSILSINTEGYSQAKANILAVICTEVYIVCMQEMHKGPNNSRPTIEGKTLVAEIRHRQYGSAVFARPDL
xIEQVHTSTSENNIETITLSLKNITITSVYKPPSSTFQWNNLPDSSTRKYSLVIGDFNSHNTAWGYDNNNNDGILVEQWA
ETSNLTLVHDAKQPKSFNSSRWRRGYNPDISFVSSGISQVCKKAVLEPIPHTQHRPISIKLGSPIMVQNTPFHRHFNLKK
ANWAAFTEAMEESVRDITPTHENYNNFVRAVKRSACCSIPRGCRARYIPGMSSSTSDLYALYEKEYHLDPFSESTTTLGE
ILIDNIGVERRNAWKEMIEDTNLTHNSKKAWATIRKLGGDNITPPAISNVTANQVAQQLLNNGKRSHRRNTGEHHHCIIP
SDKQPPKDLTRPFTMEELTVGIGLLKHGKAAGVDDVLAEMIQHLGPLARQWLLDLFNACMMSKQIPSVWRKARVIALPKP
GKDLSSPKSYRPISLLSITYKLYERLILQRISPLVDSKLTRDQAGFRPGRSCAGQLLNLTQHIEDGFQQKLITGAAFVDL
SAAYDTVQHRIMIHKLYLMTDDLDLSQTIHSLLENRRFYVELNGQKSRWRSQKNGLPQGSVLAPLLFNIYINDQPLPAEC
QRFIYADDLCITTQQKNFEDTEKILERALNEMSDYYLNNYLKPNPSKTQICAFHLRNRDAERHLNVTWGDQSLEHQKHPV
YLGVTLDRTLSYKKHILNTKAKVNTRNNILRKLANSKWGAHPSTLRTTALALCFSVAEYACTTWGRSSHSKHIDTALNDT
CRIITGCLKPTPVPCLYALSGIAPPYIRRKVAGDIDRQVQESDDRHPLYGHQPAHRRLSSRNSFLSSTIPLTTSPESART
TLWQKEWEKLGDKAVEWSRRGITPSEELASGSNYKWHTWRSLNRLRVGLGRCNFLMKSWGLYATDQCVCQEKQTMDHLLR
CPVAPQCTPQDLATPTPEAVACAEYWEQTI
>Vingi-1_PMa_pol#LINE/Jockey 11-3088 [Petromyzon marinus]
MTTCSRSSLLRAKAQRMSSHRRPNARQRYPGLKSNSTESISQGQSNVNVGPSLRIMQLNIEGLSSAKCDYIAKILQFQDV
DVLALEETHLDRQCPRSKIIGYTLIAASHHPKHGLATYVKNDLKDTVQVVPHTSPHYIAIKINDVTVVNVYKPPGMEWPC
PALPQPSHPIIHIGDFNSHHTLWGYSANDRAGEQLTSWAAAEDQHLLYDAKDRGTFKSARWKKCYTPDLCFVSRDQNGNP
MPSTRTILDDFPNSQHRPVVIHIGLQIPLFRCAPKPRWNLRSAEWVNFTADLEESVGMIPPRAVNYRRFVGLIKAVAKAN
IARGFRKVFTPCWTPESEQLFRKFNADKKQETAKALLESLNLQRRERWRETVEALDFAKSSRKAWRLLRLMGAAATPAYK
PPQVSPDEIARQLINNSRTSIDKSTRRQVYKELYCTLDNCQETSEFSRPFSVEEVDAGIAQLKCGKASGLDDIYPEFIKN
LGPRARKWLATFFTDIHSTSIVPKEWKEARIIAILKPGKDASDAQNYRPISLLSVCYKLMERLLLKRLMPTLEEIVPQEQ
AGFRTGRNCCDQVLALTSHIEAGFERQLKTATAFIDLSSAYDTVWRKGLLLKLAKAVPCRPTIRLITEMLSNRWFTVHLG
EAASSPRRLNNGLPQGSVLAPALFNLYTSDIPATSCRKFTYADDIALATQARKMEDTEAVLEKDLKTLEEYFKNWRLKPN
PSKSVVSAFHLNNRQASKTLNVNFCGAKLRHDEHPRYLGVTLDRTLNYHHHLKQAKGKTKARVNIIQKLAGTTWGSDAST
LKISTQALVHSTAEYCAPVWGASPHTNLVDAEINNALRIISGSLKSTPLPWLPVLANIAPANIRRDDATTREYNKIMKNF
TLPLHQDLKEPPRPRLKSRKPFWIRASALAAENKDTATRWSESWAAMDVANKNIIHDPTVEVPGFSLPRRLWTTLNRART
QHGRCAYTFHKWKIKESPNCDCGEVQTIKHITDECSIHAHPGGIAEIHTASTTSLDWMRNLCIHL
>Vingi-4_SPur_pol#LINE/Jockey 175-3086 via tfasty with Ingi-2_SPur_pol, 1 frameshift. [Strongylocentrotus purpuratus]
MKMPNRAASQSNSAEGPLSRPALTVLSWNAEGISDAKEEVLAHMCKQMNCDVLCLQETHRGSDNPRPKIKGMKLAIERPH
RQYGSAIFMNEKIRPDSTSYTHNNDIEVLNVTIKGLTISSIYKPPNISFSYPSTTTNRHIVIGDYNSHSTQWGYDTTGDD
GALVETWAQNNDLKLIHDPKLPKSFASARWKRRYNPDLVFCSRLLAPTSRKFVAEPIPRSQHRPIGIQLTAVITPNKTPF
KRRFNFAKADWPAFTEHLDHALTHLPADPKNYESFIDIVKKVSRTHIPRGCRTTYIPGIDEESSQLLANYTTAYDTDAFS
EDTINLGEELISRISQRHRQMWQHMIETTDLRHSSRKAWATIRKLGIDSTRAQQHYNVTADEVANQLLKNGKAPKTTNSH
RHKLPGVDQNMSLFTRPISEEELQKGISTLHVNKAAGIDDIRSEQIKHMGSVAQKWLLDMFNNCIENTCVPKQWLRTKVV
AILKPGKDSNEAKNFRPISLLCQTYKLLERLILNRIGPHVDSQLNCEQAGFRPGKSTTGQLLNLTQHIEDGFQNNLITGA
VFVDLSAAYDTVNHRRLQTKLHDITNDLKLTRFIQKMMQNRRFFVELDGQKSRWRKQKNGLPQGGVLAPTLYNIYTADIP
STENTRNFIYADDTCITAQHSTFEAVELHLNTALASLSEYYRANYLRANPSKTQVCVFHLKNREAKRELKLKWNNVQLNH
CEHPVYLGVKLDRTLSFKKHIEKTIGKVESRNAIIGKLASSHYGADPKTVQSAAVALCMSSAEYACPVWSRSAHVKKLDT
TLNNTYRKITGCLKPTKVEEIYHLAGIGSPNQRRTNTCLKERMKQATDDRHMLHGYLQPHKRLISRHSFLDSVPPPEQNP
PPSAKPVLIKGLTxKWPEWQCLNRMRTRMGRCKVNMARWGYAHEGDTLCDCGETQTMDHLLQCGGTGCTDEDLSLVNETA
IAAIERWKNLI
>Vingi-2_CE_pol#LINE/Jockey 2-1423 Fragment [Caenorhabditis elegans]
NMKQPAKRTVMTCLDQRAAFDKVPIKKLCVDLHESLNEAKISKWLTNYLSKRIIKANFGNHSSKWCTLLGGVPQGSVLSP
NLFSFYMRNMPIHPKTEITVYADDTTILAQDTNPFKAGELIQEHLDLLYDFFNERKMSISAEKSTTTLFTCDTKEFKTKI
PVNWNGAEIPTTNQVRLLGVHLNTMCGSKDHVAETRKKMMVSTNILKALSGTKWGCSKELLISTAKALVKPIAIYGAPAW
SQLLSETNLNKLEAAYRNTLRTCCGLTSDTPIEHIYAEAQMMPLKEEFELAKQQTYIATTKSGTHPNRNLESRRNTERRS
NRPREPPLNLQEATKTHLSRLKGTKAEAQKANHTRFVREFLNSAPPNRILGATPPPLNSSEESSLPKATRTELARLRCGH
SLLIPRYKARIEGTPIGTCGCGDNEGGIDHYLSCGRSHPISKEKLWTSPMEAARALGLAYKPYDPGGGATTSV
>ATLINE1_9_pol#LINE/L1 170-4051 (2 frameshifts, estwise with 2583130_Ath) [Arabidopsis thaliana]
MRTAAWNCRGLGNDLAVRRLKEIKKKFSPDIIVLMETKXRNDIVRDICSDVGYDRVVMVPPNGLSGGIALMWKSSISVXV
LYQSPNLVDTFVNINGFGFYLSCVYGHPNPIHRHLVWERLERTATQRTGPWMAIGNFNEIRGNHEKKGGNLRPESSFFDF
RKMIQTCDFHDLKFTGDPFSWVGKRHTHDVACCLDRSLVNNEWLTQFPASHMEFLELIESDHRPVITTITSDFEQKHNQF
CFDGRMVERDGFSDAVRRGWNRRIFHQDDNLRSRLTACRREISQWKRRYRSNAQEDIALLKNRIDRAHSDGTTTQHIREL
RLQLSKAYAAEEEFXRLKSRKTWLSGGDRNTKYFFASAKTRSARNRMYSILDDANVEHRGSSNIGEVAQQFFTKLFRSDL
TTNNNHYYVLNGFQQRVTADMNADLTKKITEEEVKEAVFSIGGTKAPGSDGFTGAFYHHYWDDIKQSIMAEVHDFFENGI
FDKSMNHTNLCLIPKPASSRLLSDYRPIALCNVSYTIISKILVARLKKHLSSIISEEQAAFIPGRVITDNVIIAHEVIHA
LKVKKRCSNSYMAIKTDITKAYDRLEWDFLQAAMFKFGFDVRWIEWIMTCVRTPTFSVNINGAPYGFIQPERGIRQGDPL
SPYLFILCAEVLSHMMKKAETQGLIKGIKISNKSPQVSHLLFADDSLFFCQANMKSCLAIKDILTQYERASGQKVNTSKS
ALHFGKRVQDTTKTAIRRTLDIHNDGGCNKYLGLPEQFGRKKIELFQYIVEKVREKTKGWRNKFLSHGGKEVLLKAIALA
MPVYSMNCYKLPKHICEEIERIISQYWWCTQPEGNAMHWVAWERMKFSKEERGLGFRDIGKFNDALLAKQAWRILHNPEC
LMARVLRGRYFPNSNVLVASIGSQSSFGWQSLLKGRDLLKKGMRYIVGDGTSIQPWVDPWLPLHPPRPPRQLDHTQPQFQ
TLQDFFLPHKTGWNERLLQERVAPEDIPHTLALKISQSQSKDYLGWHYTDTRLYTVKSGYWLATHLHSDEPRALPPTGDP
HLKRSIWKTTTTPKIKHFLWRMLSKALATGEELERRHINPDKYCKRCVTETETTDHLFFTCPHAMQIWRASTIPIQDLTD
SRVSLETKMSIIFEWHKQSSNNQLQAQLPFWILWQIWKNRNKLIFGREANTWEKDLSSAHHDAEEWSTLGDTRRLRNXHS
PTANGSRRILHWRRPEAGWIKCNYDGSYIQHLQRTSAAWIIRNEFGHYKGAGKIQGTQATSALEVECNSLVSAMQHLWAK
GHTKVIFEGDCKIL
>L1-2_ME_gag#LINE/L1 726-1430  [Macropus eugenii]
SQAQRALLEELKKDFKSQIREIEEKLANDFKSMKKEITEEFKRKIGQMEKEVQKLTGENNSLKGTIGQMEKEMQKLTEEN
NLIKIRIGQVEANDSMRHQESVKQNLKNEKIEENVKYLIGKTTDLENRSRRENLRIIGLPESHDEKKSLDNIFQEIIKEN
CPXVLDPEGKIVIERIHRSPPERDPKLKTPRNIVAKFQNYQVKEKILQAARKKQFKYRGDTVRITQDLAASTLKD
>L1-2_EPa_pol#LINE/L1 1736-5676 via tfasty with TA11_pol, 1 frameshift and 1 stopcodon. [Eutrema parvulum]
MSLLSWNCQGLGRCQDLVIPRLKELRQKHFPEVLFLMETMYSRNVLVDLQVWMGYDRVFTVDPVGRSGGLAIFWKSSVVV
DIKFADKNLVDMAVQFGGVSSFVSCVYGHPDVRFRSKVWERLARTGVNRVDCWCMLGDFNEILHNGEKLGGPPRSENSFS
AFSNMLFGCGMVELKGLGNSFTWGGMRGTKWIQCKLDRCFGNRRWHSNISTSNQLFLDKRGSDHMLVLVSLIASQEVYRG
QFRFDKRFLLKPQVKQAVDSAWNVVDKERGSFLSERLRRCRKVLSKWKKENPVNARDRILSIQEELERIQSSNDPCIRSL
NKVKKDLLGAYKEEESFWSQKSRIDWLKDGDENTKFFHATVKANRTRKDLEVLVDPDGNVHKEDASKADMAVKYFIQLFK
SSGPQRFQEIFHDFAPRVSSLDNDSLVKDVSDSEIKEAVFSIKPTSAPGYDGMTGLFYQKYWDVVGKQVCKEVKSFFTSG
VFPEEWNYTHLCLLPKVTNATSMSDLRPISLCSVLYKVISKILARRLQHLLPSLVSPTQSTFVAERLIADNIAISHELVH
GLRTHPKVSKEFMAVKSDMSKAYDRVEWSFIERLLSAMGFHGRWISWIMRCISTVSYSVLINNKPFGLVKLERGLRQGDP
ISPFMFVLYTEALTHLMNRAECQGRIEGIRFSDNGPAIHHLLFADDSLFLCKADVLQCSVFKEILETYEEVAGQKINVQK
SSITFGDKVELEVRDSIQEKLGIFSEGGMGKYLGLPECFSGSKSDLLAYIHEKLKSKVSGWFARLLSLGGKEVLLKAITL
AMPIFAMSYFRLLKSTCESLTSSMSSFWWNSQEHNRKLHWISWKKLCLSKDQGGLGFKDLELFNQALLSKQAWKVLQEPD
CLFARLLKSRYFAETPFLLAELGSRPSFGWRSLLFGRDLLSKGIRRLVRNGKSIRVWIDPWLEDGGMRVPWVKNITFNLD
LMVSDLLDRRSRGWNVSTLNELFVPSDVLLILKLKPVVDIEDFWAWSLNRNGDYSVKSGYWLACQLNWLEEISKAGVLPS
TNELKKEVWKLKTVPKIKHFLWKALCGALPVAVNVASRGIKVDLRCQLCGKEEETVNHVLFSCPVARQIWALSFFPSQDG
GFDEESIFANVQFLFHSQKSARIPASIRRSSSWILWFIWKNRNSCVFEGRSGDTLQIVQKIREEAESWFVAQQVDCVQEE
CYESCGVSVDKxDPPPPLWLKCNVGVCWDRKRQILGGAWVVRNDQGSFILHSRRAFSHSNGLVEAKFLCLVWAIESMLSL
RLNRIIFAAQVPELFGAILRPRAWPSFRFYAEES
>L1-2_NV_pol#LINE/L1 1523-5344 [Nematostella vectensis]
MGNDFEFKILSLNVRGLGEYKKCRKMFHWINGHGGDSGVSFLQETHSTKEVENNWKNRYRGEIAFAHGNSKSRGVAILFG
RKLNYQLQDTIADSNGRFLIIRCKIQNGDFLLINSYAPNDEASQVLLFKEIQIKLQSQAYTGSPNIVWGGDFNFVFDLEL
EAVFGNPKLKHRSIAAVEIMLDEYNLCDIWRLRNPTIKRYTWRGSAQGKRSSRGNYIHRRLDYLFVSDDLQSSIDRCDII
PAPSTDHSAVTVEIKADGNVRRGPSFWKFNNSLLENSGYVNELTKCIDIWKQELVEEGIDNSQLKWEVMKYKIRKFSISF
SKTLARKRRENYRELEEELKVIENIVGWTENDELSKRHEIALRNLDELSNYITEGLIIRSKAEWHELGEKNTKYFLSLER
RNKSKTHIKKNVEDGKEISGQADILQNLQSYFSRLYERKSVKTEEECLAFLSELNIPRLQAPHRDKCEGLLSVTECFNSL
NQMGASKTPGVDGLTKEFYIAFWSALGTDLVKSLNHGFTQGRLSTTQRQMIVTLLEKPNKDTRSLNAWRPISLINVDSKI
CSKVLCNRLVDTLPSLIHTDQAAFVKGRTIDEPIRIIEDVMNYVKNRNESYIMFAADFEKAFDSIEHSFIYATLRQFGFG
ENFIRWIQVLLTDNVSSILNNGHATTFFQLGRGTKQGDPVSPYLFILVLEVLAIMVRSSPEVKGLKIGKSEIKMTMFADD
TTLFLKDMNSLEKLLELLRIFQSYSSLKINLTKSEAGWLGAKNKDRKRQGIKWVDLHQKGITILGIYFSYNERLYDENNF
KRNFERFKSVLAVWKLRTLTLYGRIHVLKSLALSKLYYVCSKLSVRGDFIKQVDTALKDFIWNAKKPKVKYTTIIGEYDD
GGLRAPDFFASFRASRVTFALKLSNEEERTYKVLPRYLLKVIGGVGTIRDNFDINRLPDDISGYYKEVFGIWAELFSNPI
NESDLEDEVLWNNKYIKIGEKSVFFRSFFECGIRTVRDLCNEVGRFEWQICLKKGVPGTGYFNWLSLCNAIPKVWKDKLR
DNPGLVGQSKPAARLLRLGNERYEIGKFKAKQVYNHIVRMKFKPPTAQLNILQRIGGSPESIDWRQVYRRIYTIARDTYS
RSFQYKILNNCLFMNKDLFRFGLVDSPSCSYCFSHLETVDHIFIECTKTRNLYLDIQKWLSAFKVQLPHLCIKDIILGVE
NENAAVNSVILNYKLLVYKRRESHKLPNLYSFQLFLRDIEKVERRASKLSNKPLQHLKKWELIIHALSSTGIM
>L1-3_XT_pol#LINE/L1 2242-5960 via tfasty with L1-1_XT_pol, 1 frameshift. [Xenopus (silurana) tropicalis]
AILSWNIRGLNSKYKRSLVFNYLKRRPCDIFMFQETHLTGLKVLALRKPWIGWSYHSTYSTHSRGVSILVKKNLQFELTK
MVTDQFGRYIILQANIANKPLILVNLYVPPPFNIDILNQIMNKLAQFSPAPLCLMGDFNSCMDPSLDRLNTNTQGPTKLA
QWTTSMLLRDAWRWKHPTQQSFSCHSQAHKSLSRIDLALTSPDLLPLLDQITYLPQAISDHFPLLLTLRWLPPTTHRAWR
LSPLWLKNTEVEARNTEAYEEYWTTNINTASPNTVWDASKAAMRGTLAQAIAQARNNAKAQVKQAEEELTQAEREHILSP
SDHSYNKLLQARNALEREETILTKKAILYQSQRTFEKGDKNGKLLAFLAKAQTSPSAVARIQTSTGTWVNEPSLIAQEFA
TFYQKLYTSTVKYTPTQLSQYLDTITIPTLSPGSRALLDHPISTQEIEQAIADLPPNKTPGPDGLPAEWYKALSKTISIH
LLETLQYAYDNKTLPPSQLEAQIVVIPKQGKDPADCSSYRPISLLNTDAKILAKILANRLKRVIADLIHPDQSGFMPGRS
TAFNIRRLFTNLQLTHAEKGSRIIASLDSAKAFDSVEWPYLWETLKRFGLGPRFIAWVKLLYNAPKACVRVNGITSALFP
LTRGTRQGCPLSPILFALAIEPLAILIRESQSIKGLTYQTITEKVSLFADDLLIYLADPDTSLSALLQTVNQFGNFSGLK
INWEKSVLYSLDNPNPPALAVDTPLKWVSSFKYLGITVHSGLDQYIPHNLNPIITSLTNDTENWAKLPLTLWGRVNIFKM
IYLPKFLYIFHNAPVYLTAKVFKAINKILIPFLWGNKQPRIAWEKLTASYTDGGLALPNLQLYYMASQIYYLHWCFLPDP
YNPNMTLQALTLGSIEGMNNFPYRHVNDFPKVPTTLSVPYRNWNAALKLYKRDPPLVSARLPIWGNSYLPHLRNLQEFIL
WPTQNFKYLGDLLINSTFPTYEQISSKCQPPKPQFYRYLQLRHAFNAQFATLSPEITSLDIEHILHKPEAPKLVSHIYSI
LLSTKPRPFETARTRWLTDIPQLTSEVWEEATDNCYNYLISTRDRLVQYKIMHQLYITPYRLHKMGRKPDPSCPRCNASP
AGFFHMIWSCPDIARYWYKILKNLADNLDFPHVTSPSICLFGILEDIIPSSYARNRYRTLLFYARKNIAMHWMGARPPSI
KTWKQLVNQAIPLIKLTSEARGTQAKFDLIWNPWIEAGLD
>L1-3_PTr_gag#LINE/L1 172-1332  [Populus trichocarpa]
MLMTLHNMEGFRFLGASKAILTFKTQQDMQLAADEEKEFWGQYFEELRPWCITDKASDIFSWILISGLPIVAWNMECIKR
LVGGDCKVLGYDLTSVSKGAISGLTILVGKPPTVSINGTVNLTIDKEKVEINISEIKYEACTDLASLIYSXGVNQEFDSE
LDCTSSPSDPEIVATKEQPYMXANKNSSFTDLEYVTEVIMMQCFSRCEAEKERDAHGYEAQVYFPEILDDYMIQDLTARG
KWQTSTPTISNIPRKDKEKGTDNMSVMEEDQQSWPTSNLARSMTLRNGKQLGATKCHEGHRKAAISTDSNSSAGNEDSID
SCIRAVNQRLQLSQPPSDLPTACDEVGAMKEIGQKLGIEFGTTGESIEVTIQEAIDAEQDHWDRYVQ
>L1-1_STu_pol#LINE/L1 3365-7493 via tfasty with L1-4_Mad_pol, 2 frameshifts. [Solanum tuberosum]
MIKAICWNARSINTKGSLERLQTLKKLHHLSIIAILEPFADNSHIDMVRSQLQMDHAVSNPNGKIWLFWSNEVTGHILEK
HDQHITVTFKHTDIPEKFMMSFIYAKCKDISRRPLWDRLLFYANMDLPWCTIGDFNVITSIEEKLGGIPYNMNKSFEFIG
VIEACGLTDLGYTGLPFTWCNQRDAEARVWKRLDRSMVNDKWLEVMPQTTIENLSSVGSDHSPLLMEMTRANESHIKYFK
FLHFWVDNVTFMKTVQQCWEKGVTGNPMWRLHQKMKRVTATLSNWSKQEYGDIFTKVREFEENIRKSEEELMTNNTEALR
QKLHQMNATYIRYLKMEESILKQKTQLQWFKEGDANTKYFHALMRGRRRRLFLHKICTENEVWIQGEEQIAQAACDYYQQ
IFTGQNDRIDERILQHIPTVVTPEQNEMMQAMPTIEELRQVVFAMNPNSAAGPDGIGGKFYQACWSIIKEDLLAAVQSFF
CGNIMPKFMSHACLVLLPKTEQPTRFTDLRPISLSNFTNKIISKLLSMRLATVLPLLLSDNQSGFVEGRSITESIMLAQE
ITHGIKKPHIGNNVVIKLDMTKAYDRVSWSFTCLVLRRFGFGEVFIDLVWRIMSNNWYSIIINGHRHGFFHSTRGLKQGD
PLSPALFILGAEVLTRLLNSLHQNPSYKGFFMEPKGPQINHLSFADDVIIFASTDRHSLKLIMDRLGEYEHTSGQLINKE
KSHFMVPDNTSQDIIHTIQEVTSFSQKSSPITYLGCPLYIGRQRIIYYSHLVEKVSKKVCGWQARVLSFGGRITLIKHAL
QSIPIHTMAAISPPSTTIKYIEAIIADFFWGRDLDKRKYHWASLDTMSLPCTEGGVGIRRLTDICTSLQYKQWWSFRSKV
SLWSQFLKAKYCQRAHPVAKKVDTGQSLMWKYMMKNKIKVEEHIGWKINSGSCSFWWDDWLGGGALANYTTSISSLNNAT
IAHFLVNGKWNERKLRQQVPPLLIPSILNTNFQFVQGVKDSAVWKHTEAGKFTCTSAWEICRKKDTTVINSQIWHRHIPF
KMSFLLWRAIRYKLPTNETLATFGVEPVKCYCCIQQGWDEVDHIFIQGHFAGHIWKFFAGSMGLNFQQTSLINQLLCWSG
ITGKNAAHTTIIQTLPIVICWNLWKNRCSAKYGGKTSSILKVKYLILKDMLLILNSVFPYLQLPVIWPEVVDCIEKCKQE
IRVTLVMWKTPPPNRYKLNTDGSALHNPGKIGGGGILRDDQGVIIYAFAVPFGEGTNNQAEVQAACYGLNWCIQHGYTNI
ILEVDSELLTKWLLQVSIPPWRIHRYIQELQILANQCVFFQCVHTYREANGTADLLAKHSHQQDIVQHYYTHHQLPQAVK
GSYLLEKMGVQNFRRRS
>Isabelle_TM_gag#LINE/L1 873-3782 via tfasty with MIUSE1_TM_130-2229, 4 frameshifts and 1 stopcodon. [Triticum monococcum]
MDGLPHWDFKPGQAIAEQVRRRFGSTVHFSSSNGTKEFFLVVFFSSASFPLSVESVGIALQCCIGGSAEGFSITRLDDRK
FRFSVASNRVGHFIYHLKDRIWPDFVCHFSLYRPERHAVPKNDSSWHWIIIWQIYRHANLWRLSLHSLLTHGLMRIDPSS
VSELAKFDLLAQDLCTQRLSPVTGISSESSPPAGTLPRSFKQLSFGNNVPMHIQGNAFTTNLHFGSFLEGNCPSRAGDME
VNQHLLPNTVRIGDFQTLVPSLGNQLRNQFQGSKFRQDCWDAIPPFMLLYINDQRKFGYSVSHIAKIWSIQSVPPSEYIN
KRLNICYLCNGSGHQVDSCPDQACNICSSEPCVCSTGPPRVDPSACGLHYPGPQSCYLCGSLAHLYFHCPGLLRCHICSF
LGHTTHSCHPLARRLHWKPKFGSIFLDTRMGNPCNSGLHKEGNIRDAYHLEKGKEIMANPITAVSLRHQINQPSINDIVP
VRNATDSPVPTAVRCSSKGRSRHVPRLVGRVGGSRNXSGFPRGLEPVPIRILPCFSALIAPPLQSFHHLRMANFPVIVIP
YLLQSMTIELGPEDRKVRDDMVISPTPPLRHDFLAIAEVNRFVPFHHKAALRHTIEGLLHESQFFPTKIDDHPLGVGIFG
FVDSVTRDAAVGTTFKLDEDEGNIHTVISFVPHDAALNMRQTTYGPQIWLLYIGFPQDYQTSHYMHKSVDKFGELVTWNN
PRGDRKLVLLKLELFICLVPKSFVMHQLGGERLCWTVCVTMLRSSDWNAHLPEIPPAGIDPLPANGIPHPLHGDGLTAEQ
LYQAQLNNWMAQNAQMNANAANNANGDNQGNEVHFQANWGQWPPSPPPALYNYQAWLAQEGLQVQDGIVPNNNLLDSPDR
ESSDMAASSAPLYPMDTPAAQLNSLEVVVSLTQNGLQFAMTEQGNVISSMLINQGFSFIRLNSFLRSTIMPLVLGALVLD
SGMIACRLKL
>HAL1ME_gag#LINE/L1 881-1930 [Mammalia]
MNGQPRITRHLRKTNSMKEKDQDEQTEQLTPEETEIIQGTEENFKKILISILREIREDIASIKQEQAAMKKKQSENKKEF
LEIKNMIAKXKNSIEGLEDKVEEISQNVEQKDKEMENMREKLRDMEDRSRRSNIHLIGVPEGENRDNGGEEIIKEIIEEN
FPELKKDTSLQIERAHRVPSRMNEKRPTPRHILVKFQNSKDKEKILKASREKKQVTYKGTRIRLTSDFSSATLDARRQWS
NVFKVLRENXFEPRILYPAKLSIKCEGKIKTFSDMQGLRKFTTHVPYMKKLLEXVLQQNEKGIQERGRHGIQETVAAEYD
PEEVKEAKKKLKENPXDLDAWXILLRAAXV
>Isabelle_TM_p2#LINE/L1 4055-4537 Matches second ORF in MIUSE1_TM. [Triticum monococcum]
MEPEHSLVDVSPVETLPISANVTPEVYYAGILAEPGHSSATTLGGTGPDSAETIRKGKMALPMSSVSLRRSTRSNKYDGF
KVPSITDSNPKSSKVKPRINPSALQSVARSEDAGSTAAPPPTPIATIQLVGTVKCDIPAAELSKEVLNEVNEDALSSLSS
A
>L1-1_SBi_gag#LINE/L1 1139-2953  [Sorghum bicolor]
MVAAPGPVAISGGELLPRRPRAPMVVVPRSPAVQAAEDSLRLALVANVAGNRPPVSTAMLRDHLVQHFGLTAGEFDVRRH
FPEDFVVRFQHGADRDRVLASRRPSALPMVWYPWRRTTLAHLGTFKFKVLLALSRVPLHARSVQVAQTVLGPACANIEES
LLRDREDDDDRDFFVTAWCKHPAFVVDRNLIFIPEPVLGGVAPPDDHLAGLLYLIKVRLVAIQDFSSPPGSPGGVQQEAG
GWELPAPGQPPFDDPPPDGPFGGDAAGDGEVEDAPAPAGGGLQLHQRASPFAPSCGFVRVGDLHCPLAPGVGGRDVLEAR
ARSLEPCPSTPARLATLTGSGSSAPSPSIFLRREPSTPTCPGVVGAFLNIAPILLHGGSSCVLPPTPSHDDWFKDCVESE
LAFGAVVGRRPGTSDGCAQGCLAEAASSAGAASAPTSGTVELQSGDVAAVVASQPAVQDARVNEDASDAAECADAELPRP
SLSSFIDDFRVPLSPPLLLESPIRRVSRAASPRRTSAAPVPRRSSRLAQSAHLREPKPEAQARKVLLKKWRPVRSPPAPP
QAPNSNINDKFRRVFREPLSASKSEAMRELFPAAGRRVAGVVLDP
>L1-1_NV_gag#LINE/L1 134-892 [Nematostella vectensis]
MASGATESVLQKICDTLERVEKRVRVIENSVACLEELRKDVNNMKIECEKFKDGLTDLETGVGSIEEDVAEITERLETVA
TRETTDQLLTRVEGLENRSRRNNIIIHNVPEEAEKNSPSAIDFVQKFLRNELEIQQPIEVERAHRSPNKKRHDGSARPIF
FRLLRESDKRNVLMAGATTLKGKELKKRNKKERIFITDDVTEAVQKQRKQLWKRFLELKASRQAPNMRGYTMWSVPAAVK
YQDTDKVWRYIR
>Jockey-4_DVi_gag#LINE/Jockey 551-2386  [Drosophila virilis]
MATNNRPQNNEEIHSPIYPLPNSSIISPTNIAANVDRLDGSRPLEDFYQYYNNVLASSANRNGASTSLSAGTQQCSTWQP
QQHGTVSTTTATTTTTTASSSSGCRTSASTGTSRAALEPIGTRPKAANPTLQSTPYGTQAAGSCVTNPPLPPIKNAGATP
AFEEPLVDWQTVSAKKRRGTTLLSEGVKKGKQLNNRNTSRAGAKPATPSTASAISNRYASLEPQEDASVIDDGEMDTADE
APPVTDQQQSAKKISKPRPITVPGVSDIVAMERTIDQAVGADAYEFKVSPSGYLRIYAKDADTHRAIVRKLTEVRVQFTH
FCLKEDRPYRVVVKNLAASTPRSQIEAAFTSHGHIVTNLYNPGARQPTSDADSTNDFPSRNFWFVDLKQSLNNREALRLN
KVGRQRVTIELPRKNNSIRQCFRCFEFDHTKNYCLKQPKCGRCGQSHWTNSEQCQAKTVADLRCSNCEGNHAASYKGCKS
YQVRLNARQPAINVSPPTRYSHPQNTRRTTQQFVPSRIVQQGLSYADALRPGHHVQVRQPPARTLQPTVNPMQLQQPLQG
PQEQDASLGGILQNLQQSIAALNAAVATILVSIKELKDAQGSPQLRFPKSRK
>Jockey-3_DVi_pol#LINE/Jockey 2454-5162  [Drosophila virilis]
MQEGLEITIWNANGLCKNRPEVELYCKTNNTEILLISETHFSERSYFCLRGYDLISANHPNGRARGGAAILIRSNISYEI
LPPTLEEWIQCAKIRVSTTLGDVTIAAAYCPPKHNARDEEFGTLMDSLGTRFLIGGDFNAKHTWWGSRTNNPKGYALFRQ
TRLRNLDCHSTGAPTYWPTDPYKVPDVLDIAITRGLDTGRIQVREVEDLLSDHSAIAISIFAAXMRKSARKKLIYKATDI
GKYQTWLDNCTNPSPPLNSPEDIEAAVTELTTHIHNAASHAAPRLSSRPRVENRDVHLWSQQVAELLAEKRRLRRVWFLS
RNPRDKTVLNRITKELKETLKILRKDALDSFLTQLAPNDPQHNLWQVTKHIKRPQKRINPVRKTDGSWCRTEXDRANAFA
EHLETVFTPFSRCTSEEASETAHQLSVPPEGTETIPPVHEEEIAEYITALNNKKAPGDDGINAMALKLLPQRSISFISKI
YNKCMEIGYFPAQWKSAQVVMIPKPGKPEDNLASYRPISLLPALSKILERVFLSRVLPVLDEAGLIPDHQFGFRRCHGTP
EQCHRVVQTILDAFEEKKYCYAVFLDVKQAFDRVWHPGLLQKLKGNLPHAYFLFLASYLENRTFRVKCGXTVSNTKHIHA
GVPQGSVLGPLLYNVYTADLPVTGNPNVRVATYADDTAFLTISKSPGEASSLMQMQLNLVNDWQKRWNITVNGDKSTATT
FALRSGNCPPVQLDGVTIPEEPNPKYLGITLDRKLTWRAHLTKKRNQCEQRLKAYYWLMGRRSRLSTSSKILTYKAIIRP
IWTYGIQLWGTACRSNIRIIQTFENKALRIATNAHIYHDNATIHDVLKFPWVKDEIAKSSRRYIKRLHNHPNTLAICLLD
NSQQRRRLCRAHPLDLPWNNIAI
>Jockey-5_DEl_pol#LINE/Jockey 1083-3866  [Drosophila elegans]
PATKPNGVYVVYAHNYARFNAKPKSSDSNAGLTTIKIMTSLRISTWNANGVSQHKLELTQFLLDNHIDVMLLSETHLTNR
YNFQIRGYSFYGTNHPDGKAHGGTGILIRSRIKHHYYNKTAKNYLQATSISIQLITGNQLTLAAVYCPPRFNITEYEFLQ
FFNTLGDHFIAAGDYNAKHTHWGSRLVTPKGKQLYNAIIKSNNKLDYVSSGRPTYWPTDPKKLPDLIDFAITKNIPKNLI
SAECLSDLSSDHSPVLFHLLQQPGTLEHQFNLTSQKTNWLKFRKYISSHIELCPRLNDEADIDSFVTTLESVLVTAARVS
TPQTSNIQCKQKKTNLQIEQLVLEKRRLRREWQFYRSPSARQNLKYASRQLTKALKQEESYAQRRYIEQLSSTCSKHSLW
RAHPSLSSPKETVMPIRNPSGGWARSDKDRASTFADHLKNVFQPNPATNAFTLPTFAYDTQLHHEPIEFRPLEIVSIIKN
HMNPKKSPGCDLITPKMITELPYCAVRTITHLFNAIAKHGHFPKRWKKSIIIMISKPGKDPTIPTSYRPISLLSCLSKLF
EKCILTRINTYLRIQNGIPSHQFGFREKHGTIEQVNRITSEIRNAFEKREYCTAIFLDVSQAFDRVWLEGLMYKIKTMLP
SNTHKLLESYLHDRKFAVRCNTAISDDFSILAGVPQGSVLGPTLYVLYTADIPTSSRLTTSTFADDTAILSRSKCPIQAT
AQLALHLADVEKWLSDWRIKVNEQKCKHVTFTLNRQNCPPLTLNNTLLPQSNEVTYLGVHLDRRLTWRRHIEAKRTHLKL
KASSLHWLINARSSLSLDYKVLLYNSVLKPIWTYGSQLWGYASNSNIDIIQRAQSKILRTITGAPWYVRNENIHRDLNIP
PVKAVIAEQKDKYLTKLSLHPNHLARGLTRLCNQSRLRRNDLPTQRPT
>Jockey-6_DEu_pol#LINE/Jockey 1912-4620  [Drosophila eugracilis]
MGALKIACWNPNGLSSKANEIAAFIELHEVDILLLSESRLNSCSIFKIPGFTLYKADHPDDRRHGGAAILVKSVIYHQLS
FTLSEEHIQAVSIELSTSRGRFNIAAVYCPPAVRWTEADILPLLSQLGVKFLAAGDWNAKHRWWGNYRMCARGRILSSVL
ANNNVEIVASGEATCYPYCANATPSAIDFGISKGFRQQQVSVRVLTELSSDHLPLLFLINEEAQFFKGVPKMLPAHANVD
IFKSYIESHSVLNVPITTCNELDAYVDYFTTTITAAAQRATPPQRQSDPPPTRRAPLLTLEARALLEQKRHLRRQFIVTG
DPATKQLLSSVSNRLHRLLAKTRQKNIDTLLEGAGPDNCSDFSIWKLTRGVKRQPLFQSPILSHSGLWLKNDCDKANAFA
EHLSTTFTPFELPDASHREEVDNFVRAPIQPARPIRHTTPQEVTLQLKALNLKKTPGLDGIDNRAARSLPPKGVLGLVKI
FNAMLSLGYFPTQWKRARIIMIAKANKPPTQIDSYRPISLLSTFSKVFERILLSRLMDLPQVEGHIPQHQFGFRKSHGCP
DQVHRLVNHITYGLEHKLHTVGVFLDVKQAFDKVWHEGLLYKIKELLPAPYFAILRSFITGRTFKVAVRDSCSSLAHIHA
GVPQGSVLGPILYTIYTSDMPVPLPTTDARLLMATYADDTAILASHSSQLTASETVQNWLHAMERWTKQWNIAINCSKSA
CVTFSLRLVMDIDLSFNGNVIQNASSTCYLGVHLDRRLIWKTHITAIKTKCLRKLQKLDWLLSSRSLQLSTKALLLKAIL
TPTWTYAIQVWGTASRHQLNRLRVVQARAARRASGLPWYVTNQAIQNDLRLVPVGDLLNQLSRSYSDRLSAHPNPQASRL
ANPQTLRRLKRFHPSDLSSRIIN
>Jockey-6_DBp_pol#LINE/Jockey 462-3260  [Drosophila bipectinata]
SYDMQSTTKPYGVHVVYAYNYARSNAKPKSINTNAGFTTIQIMTSLRISTWNANGVSQHKLELAQFLLDNQIDVMLLSET
HLTNRYNFQLRGYSFYGTNHPDGKAHGGTGILIRSRIKHHYHTKFAKNYLQATSINIHLNTGKQLTLAAVYCPPRFTIAE
DEFMQFFNSLGDHFIAAGDYNAKHTHWGSRLVTPKGKQLYNAIIKAKNKLDYASSGTPTYWPADPKKLPDLIDFAITKNI
PKNLICAECLSDLSSDHSPVLFTLLQHPGTWDQSSNLTSHKTNWVKYRKYISSHIELSPHLSDEANVDSFVNSLESVLVS
AARVSTPQTINTQRXQKKTNLQIEQLVLEKRRLRREWQCHRSPSAKQRFKHASRQLDQALQQEETYVHHRYIEQLSTNST
KHSLWRAHPTLSSPKETVMPIRNSTGGWARSDADRASTFAKHLKNVFQPNPATNAFTLPTLSDEPQPQHEPIEFRPNEIV
NIIKRQLNPKKSPGCDLITPKMIIELPYCAVCTLTQLFNAIAKLGHFPVRWKKSIIIMIAKPGKDHTIPTSYRPISLLSC
LSKLFEKCLMTRINTYLRIQEGIPSHQFGFREKHGTIEQVNRITSEIRNAFEKREYCTAIFLDVSQAFDRVWLEGLMYKI
KTMLPYSTHKILESYLHDRKFVVRCNTAISDDYTVGAGVPQGSVLGPILYVLYTADIPTSTRLTTSTFADDTAILSRSKC
PIQATAQLAHHMVDVEKWLSDWRIKVNELKCKHVTFTLNRQNCPPITLNNTLLPQANEVTYLGVHLDRRLTWRRHIEAKR
THLKLKASGLHWLINARSPLSLEYKVLLYNSVLKPIWMYGSQLWGNASNSNIDIIQRVQSKILRTITGAPWYVRNENIHR
DLNILPVKEAIAEQKVKYLTKLSVHPNHLARGLTRLSNQSRLRRNDLPTQRPT
>Jockey-2_DEu_gag#LINE/Jockey 219-1883  [Drosophila eugracilis]
MSLNDVRTQRQREQDERRLSVQRNNAYFSFKATESNASSSQTRSITPNLTEFLNVESERARSCSPSLPSMSLQPKSAATS
TAISLTTSTVTTTTTATVTTARLTTSSASSANINTSAAALPEKENKNKENIKPAVQTGMDRYIQIKRKLSPLNSQRKITR
GNANIAAIETPSNSNRFKILADYEDDAESTEVEKRKTKPPPIYIREKSSNVLVNKIIELIGKDNFHIIPLVKGNIQETKV
QTKSEDNYRVLSKYLTDKKKNFYTYQLKSSKGLQVVLKGIESEVSPAEITKALQEKGFSAKTVFNILNRDRKPQPLFKVE
LEPEIKPLKKYEVHPIYNLQFLLHRRITVEEPHKRNGPVQCANCQEFGHTRSYCKLRPVCVVCGELHDSAHCPASKDDHN
SKKCGNCGGNHTANYRGCPVYKELKSRIHQRGITARTQNKQLIASRSNPEVFFSTAARSSLGPINSAKNVTYASALKSGL
STPASKSSLPQSAYQEPNTAQQHQPPEQPKSNFEAMICSLQQSLTEFMSFMRTTMQDLMRNQNLLIQMLVSQQSK
>Jockey-1_TCa#LINE/Jockey 365-2746 [Tribolium castaneum]
MGANQLIQNSFQVAFWNANGLRAARDELEEFVDRLQLDIVLVCETKLQPQTTDPKIRGFTLHRADRGIGPGGGTAIFVSN
RIKHSVLATPDLRNMEAVGINVATANGPLRLFACYNRPQIPILEEDLQTLFDGNTPTIAAGDFNAKHINWGSRRSNRNGN
ILNGFTDQHLDISVMAPVEPTFYRNSDGXADILDVAIVKNVVHQVRLTAINDLSSDHNPVLMQIGNEANDPIVCRYTSVD
WRKFTKHLVNNFGTIPPIRSTEEIDEAVQTFETKIRDAITPPPGNXELGPKTGDXITGPHRRSTRADXXHVEEIEDHVES
IATEDPDEPLTPTTPEEVSGVIRKLKKRKASGPDEISNRALKNLPLKVIVELTGILNAMFSFRYFPQRWKMATVIFIPKP
GKDPKFPQNHRPISLLSAVGKVAERLIRSRLLQLTQERHIVPDEQFGFRSNHSTTDQLLRVVEHASISIERKQVTGAVFL
DVAKAFDAVWHDGLIYKLHQTGIPLAMVQMIRSFLDGRRFQVRINNSVSDPQDLEAGVPQGSVLSPLLYSIFTHDIPKTD
RTTLAIYADDTAILTRSKQPYMATRYLQESVERIENWCRRWLINVNPDKSRALLLARRRVSPDGFVRMFNADIPWSDQVK
YLGVILDKKLSFGPHLDYALAKGKMATGMLRSLVCRRSALSIDNKLLLYKSVIRPTMTYASVAWAFAPCKTRMHKLQTFQ
NKFLRQAFNAPWFVRNNQLHREAKMPTMEEFFRETAERAFSKAEAHPNPLVREAVDYDENGPSRCKRPRMALL
>Jockey-1_DT_gag#LINE/Jockey 508-2238  [Drosophila takahashii]
MAGLSDSEDELSIRNTVSRQQQIMKEALNSSLSKFRRXYASTSVKTAPPPNNNVDPELAAINGEDEDWWTPRPVNTKRRL
ESGSPNSVTKILRNSGSPKANVSANRFSELSDMETDERVEDSSTVSPNYSXQPSTSTSTPGQASSNNSNPINNNAGNSIA
NNITNPSQPSENQAQLPSHKPPPIVVAHCENLNGLIKSTDKIVDPSKYSLKCHPNNSVSILAADSDAYRAITKSLTLKNV
PFHSWQLKEXRSYRVVIRGIHHSVPDDNIRESLSLSGHTVRYINRPRSRFDKTRLANLVFIELEPAANNKEIHEIKTLCR
QRVQVEIPYKKEDVVQCHRCQAFDHTKNNCHMGFNCVRCGLQHGLKDCLRDVHPVKCVNCGGDHTASYKGCAAYQKAASR
RKSVTSYPQQSARSNGQSNFVASTSYANAVRGQVNRPQHQQLPIPSQQNQQFPPLGSNNRKQSQPRHLKAPRQQQHQQPS
QQQQNHRQQQQPVHQQESFPQQQRRSPQQSFNDQQWQRHEQMFLQSNERMSVLVAQIDKLFQMMMSMMELVSKLLPQNTP
GTAQAFASFLPVNATLP
>Jockey-2_DAn_pol#LINE/Jockey 129-2960  [Drosophila ananassae]
QSRSLSYRQPDGRLNGQDGVNVRANDGEGHEPNDQNDGHHLQLPMQAGLDITVWNANGLVNSRPEVELYCKTNQADVLLI
SETHFTTRSYLKIRGYDIIAANHPNGRGRGGAAILIRSSIKYEALPAIREEWIQCAQIQVTTTNGDITIAAAYCPPRHRV
SVEDFGLLLDCLGPKFIIGGDFNAKHPWWGSRIRNPKGNALYRQVQSRSLSCHGTGAPTYWPTDPHKIPDVLDFVISGGL
DSAGIQTREVVDLISDHSAFAISLYSPAILRSARKRLIYKATDFGKYQLHLNTVTDPSLPLDSPFDIETAVETMTAHIQQ
AASVAAPRPSNRPRATDRDIHFWSPEVEELKLEKRRLRRVWMLSRNPRDKTALNRASNILSDTLARLRKEAFDGFVEQLE
PGDPQHNLWRVTKSIRRPLKRIPPVKRADGIWCRSETDRANAFAEHLEEVFTPHSRCSTEDAAETARLLAEPLRDADPIR
PVTTEETAELISIMSNTKAPGDDGINAIALKLLPPPSILLITRIYNRCMEIGYFPSSWKRAQVAMIPKPGKPEANLASYR
PISLLPMLSKILERVFLSRALPVLDEAGLIPDHQFGFRRRHGTPEQCHRVVQYILDAFETRKYCMAVMLDVKQAFDRVWH
PGLLCKLKTALPRPYFIFLKSFLEDRKFAVRCGEAISEYRVVHAGVPQGSVLGPMLYNLYTADLPVLHRPNILAATYADD
TAFLTTADSALGAAEVMQLQLDLLSDWQKRWNIEVNNEKSTATTFSLCQGNCPPVYLNGSPIPQEDNPKYLGFTLDRRLT
WRPHIIKKRKQAEERLRSFLWLLGRRSKLRTSSKLLIYKAVIRPIWTYGIQLWGTASKTNVRRIQTFENRAIRIATGAHV
YHDNRTIHEVLNFPWVKDEIQRSSARYTQKLHDHPNLLANSLLDNSDRPRRLKRTHPLDLPRIS
>Jockey-2_DEl_pol#LINE/Jockey 1874-4537  [Drosophila elegans]
MPSLRITLWNANGVSRHIPEITQFLNENHIDVMLLAETHLTSKYNFQIRGYTFYGTDHPDGKAHGGTGILIRDRIKHHFH
QRFAKNYLQATSIKLQLGTSNLAIAAVYCPPRFTVSEDQFMDFYNSLGERFIAAGDYNAKHTHWGSRLVTPKGRQLYNAL
IKTCNKLDYVSPGSPTYWPTDPRKLPDLIDFAVTKNISRNLISAKSLLDLSSDHSPVLITLLQSPELIEHPCRLTSHRTN
WLKFKKYVSSHIELTPQLNXKEDIDCYADALESVLVAAAKVSTPQGRDGHTHQHKTNLEIEQLVLEKRRLRRAWQTSRSP
SSKHSLKEAGRRLTRALRHEEEKAQRQYIEKLSPTSTKHPLWRAHPNLSAPAETVIPVRDSSGSWARSDKDRACTFALHL
RNVFQPNPANNSFTLPSPSIRXGTETAPILFQXNEVAKVISEQLKTKKAPGGDLITPKMLIELPNCAVEVICKLFNGITR
LGYFPKKWKKSVIIMIPKPGKDHTIPASYRPISLLSCLSKLLEKCLLTRIIPYLKEHNVIPAHQFGFRESHGTIEQVNRL
TTEIRTAFEFREYCSAVFLDVAQAFDRVWLDGLMHKIRTLLPENTHRILESYLYNRAFAVRCNTTISDDYTIEAGVPQGS
ALGPTLFLLYTADIPTNERLTTSTFADDTAILSRSKCPIQATALLADHLVVVERWLSDWRIKINAQKCKHITFTLNRQTC
PPLTLNNTPLPQADDVTYLGVHLDRRLTWRRHIEAKKIHLKLKSNSLHWLINARSPLCPDFKVLLYNSTLKPVWTYGSQL
WGNASSSNIDIIQRAQSKILRTITGAPWYVRNDNIHRDLGILPVKDEISKQKASYHTKLTSHPNQLARGLARVSNRTRLQ
RNDLPAQQ
>Jockey-2_DEl_gag#LINE/Jockey 179-1867  [Drosophila elegans]
MSKNVDQRTQRQKQQDEAREKTQREQDKRRLSLARNNAYFSFTSNTLEPKVQESASLLTAENQRASSCSPALLFTAQTPW
SEQCKTPTELLPPSATTTATTTSTTTVSVANNAITTPLSSSAAGKATTQPSAKIGSNGKNKATVGEITIPQAGSAMQTGM
DRYINISKRKLTPPKKSDGNMPKINRTNKGPENLGPLNENRFSILAEPETEYEELAPKKLKPPPIFVREKISNVLVNKIV
ELVGKDNFHVIPLMKGNISETKLQTKTEDDFRAVSKYLNDAKKNYYTYQLKSCKGLQVVLKGIEPDVTPSEIIEALKENG
FCAKNVINIMNKNKKPQPLFKVELEPDSRTLKKNAVHPIYKLQYLLHRRITVEEPHKRNGPVQCTNCQEYGHTRAYCTLR
SVCVACGNCHGSEPCPANKGDSLTKKCVNCQGNHTANYRGCPVYKEMKSRMQRATTARQNIYMKSQTTPEVFFAKAARSS
FGPSITTNGISYASALRSGTAHIEPKTDNIQQAMGQPQSNMETMMITLQQNMMEFMSFMKTTMQTLMQNQNILLQMLAAQ
QSK
>Jockey-7_DAn_pol#LINE/Jockey 1893-4556  [Drosophila ananassae]
MAPLRISLWNANGVSQRKLELAQFLNNNHIDVMLLAETHLTNKYNFQIRDYFFYNTNHPDGKAHGGTGILIRKRIKHCFH
NSFATNYMQATSIEVQMDHRSLKLAAVYCPPRFTISESQFMDYFNSLSEQFIAAGDFNAKHTHWGSRLVTPKGRQLYNAI
IKPSNKLDCVSPGTPTYWPTDPRKLPDLIDFAVTKNIPRNLISANSLPDLSSDHSPVLLQLNLHPVAVDKPFRLTTNKTN
WLKYKKYVSSHIELNPRLNDEADINLSTNALESVLVAAARMSTPQTQETSYNHRYTNVEIEQLVQAKRRSRRDWQSNRSP
SAKQRFKDATRRLTAALRQEEERSQKHFIEQLSPTSSKFPLWRAHSSLSAPIEPAIPIRTSTGNWARSDGERAERFAEHL
QNVFQPNTASNGISLPATSDIDTSTYDPIVFRPHELLKIINEQLNPKKSPGCDLISPKMIIELPLCAVRAICQLFNAITR
HGHFPERWKKSIIIMIPKPGKDRTIASSYRPISLLTCLSKLFEKCLLAHITPHLRTHNKIPTHQFGFQEKHGTIEQFNRI
TSEIRNAFEQREYCTAIFLDVSQAFDRVWLQGLMHKITEMLPTNTHKLLKSYLYNRKFSVRCNAAMSDDYIISAGVPQGS
VLGPTLYLIYTADIPTSMQLTTSTFADDTAILSRSRCPKQATAQLAKHLVAVEKWLSDWRIKVNEQKCKHVTFTLNRQDC
PPLILNNTVVPVANEVTYLGVHLDRRLTWRSHIEAKRTHLKLKASNLHWLINSRSPLSLDYKVLLYNTVLKPIWMYGSQL
WRNASNSSVDIMQRTQSKILRTITGAPWYVRNANIHRDLDIPLVREEIAQITTKYYNRLSVHPNHLARALTRISSSSRLH
RNDLPIQR
>Outcast-1_BF_gag#LINE/Jockey 479-1744  [Branchiostoma floridae]
MYTRAQKKKQENEAKPSIDPTNLANSDQERHFTQRKPGDHRTLRDTSKKQTVNQDQTADKHKPTQRSNTVLRKSTTLTKK
VEKLPPVEEVETDEEDCVCGCDHPEGGRWICCDSCDKWWHNTCAKLSYKVCDFLTKNKEPYHCALCITQELNDNHSRPIE
IPRKEENTQDTAKDSHIQDLSNHIVLIDGIPQPEHYKNSGKIIAEIARNKPHCAHNIDLAYLLPRGGIAVHCKNSKATED
LLQPWQDGAFNASGDQLSSHKANQSYGKRAILKNITPEATEEEIEQTILKQTDIQVKAHRYHYQDTGKPLRVVRVDATLG
QLNDLFLKTLTIRGDTITVEPYRSKKTTPIRCYNCHKLGHIARLCKEEPSCVRCGGPKAHPNPCKPKCVNCSGTHSANDP
RCREFQTIKQKLEERHLRHHR
>Jockey_Ele8_pol#LINE/Jockey 1448-4120  [Aedes aegypti]
MAREATTKILNWNACSLRSKNRELSAFLDQEGIDIAVITETHLKPEVNIFIPDFRLVRLDRCGSEGGGVAVALRRNVNCT
LLPSFQLQVIEAVGVRVETSIGPITIIAAYCPKQTNINDGTSAALKQDIVKLTRRQGQFILAGDLNARHETWGNPRRNRN
GLILQQDLEEGHYTILSPDSPTRLSRSGAHATIDIFLTNMADNISQPVVHQDLSSDHYPVVAEVGSLVNRHRVTRRNYHR
VDWGQFQRCVDANIQYEAPLASAEDIDRHLQSVEEAISVAREQHVPASGQVSNTLFIDRVTKDLIRLRNTKRRQYQRSGL
PALKSEVNRISKIIKARMVDLRNDDFSNKIRSLPDCARPFWKMTKLLKSKPRPIPPLIPLDNTDSKDRLITPAEKAAEIG
RHFVSSHNLGLDIPSPHEAAVSEHAANLHRSPNDFSEELEITADELLAYLKTSKNMKAPGFDNILNLELKQLSLQFYQHL
ALIFNQCLRLSYFPSSWKSAKVIPIKKPGKDPSSPKSYRPISLLSGLSKLFEKAINRRLLSAADQNNILLEEQFGFRRGR
STVHQLTRVTNILRRNKSLAKSSAMALLDVEKAFDNVWHDGLVYKLHRYNLPTYLVKIIKNYLFNRTFRVSLNGVNSDPH
NIPAGVPQGSILGPLLYNLFTSDMPQLPEGGSLSLFADDTSVVYSGRFTRALTSRLQRGLNVLSDYLNSWKICINAAKTQ
VILFPYSKSPRLVPAEDCKITLGGSTVEWSDAADYLGLTLDSKLLFRQQVDKTVTKSNILLKALYPLINRKSTLSLKNKL
AVYKQVILPVIEYGVPIWESCAKTHHLRLQRTQNKFLRMILNSPPRTRTTEVHRLAEIKTLEERFGDSIGRFRARCHQSG
QQVIRDLVPP
>Outcast-1_BF_pol#LINE/Jockey 1752-5759  [Branchiostoma floridae]
MKKYIFLATLASLILATHDYTSEATSSTSLPTSSREKTSTNDNMKIAQVNIRSINTSSSLVEHMCKKQNIDVLCLSEVWN
KTDRPQCLKTWNWIFKSRPTKRGGGVAIATKEHVKMMEIGLDDTTHADIAAVNIYSDTANFTLISAYVPPDNKEGMDELT
HAVKSLLSTKRPLILCGDLNARHPAWGDEKDNQLGHQLNNFLLTNNLHPINDFRPTRENSVIDLTITNSQAMKLVERWSV
QPEVQLKTDHHLITMQVGTKTPVEKVERYDLRNVDWEKWGETTHEQFQIWLEDNDKKTVPADIKVSDMYDSFKNTLNKCT
EGIINKKTITTHSKGHWTPALEEQMKVTKTALRKFRRRRDTHNLNKYLKEKETLAQMDEDAQSKHWEAQLKSMDPKKPQS
FWKTIKTHLNNNAKSVVQPLNLPNGDVATSDQEIAQVATDTFAPSEVEMNADLSHWKHNVSHAVETSIKHQTEAVKEDDD
QEDPLNYDLELEEVEAAIGKMNCNSAPSPIEGILPVMIKKGGKALTEALHFLLQCIWRHGELPTQMKQDTKVLIRKPGKE
NYNLIKSYRPITLSSVIGKIMERVINNRLTWWAEVNNHFSHTQEAYRRHRTASHGVLRLTQDITEGWRQNKTTIAVFADY
EACFDRVWQEGLLYKLITRGIKGRMLCYLSSFLKDREASYRINSITTPPQQSKVGIPQGAVLSTTLCNLYTADAYTDTNL
DNFQYADDGAGWSSGEDIQSVKEEVEAGISKVILNWCPLWNMKIQQSKTKAMIFPPPQADDIEIEDLTVDNKSIEVVDNF
KLVGVTLDQQLTYDKHITTTKAKAFRALKAVSKVTQAKKNPSQQAHILLYTTLVRPILDYASECTIAAKDRLEKAYSPIQ
RQALLTATGCLERTSTEALESIAAIPPIDIHLTCRQAQSYLRMKSKHTGNPIFDAITNMNSHKSDIQIGTPLHLLQTRLN
EMKGEMEESMVDKEPYYDSRLPPFTMGSITGSFTATTITTGGKDKAREEILTILQDITGNNVPTTVIFTDGSALGNPGPT
GCAAVVYEKWGSSEPYAVRKPVASKSNNYEGELEGLHLAIDTITRRPTTSNKILLLCDCKSAIETVTGVQQVEAYNSLIN
TLRSKLSTLKSKGYTIQITWCPGHMGIPGNEIADKEAKLAAEEARNCQNYTSWTKQQAMKHIESQAHERWNRRTKLNTRS
EHMQKIATNMKKKGQTLGRRSTQVIINQLVSGHTRLNSYQNWMNPEISPSCTNCGAVETTNHFLYHCPRYEKERQHMLLE
VENIYETYNTAEDSRDTDITTLAGMREDLSEGINKQMYMAFSQYIESTHRFDVLS
>Vingi-1_BM_pol#LINE/Jockey 155-3166 [Bombyx mori]
MPGCARRNASTNQCQMTKDIGPSVRVCSLNIEGITQAKTECMLRIAIDNKIDIILLQETHTADLAQLARRGTIPGFRMIC
ATFHPQYGTATYIREALLPSASIICTSTDTENIAMSTIQVGEMIVCNLYKPPNSTWPQPGLPNYGHPSIVVGDFNSHHTS
WGYKNNDANGESVVKWADESSYFLVHCNKDKGTVKSARWGREYNLDLAFVSLDCKRRPLQVNRTVLQDFPHSQHRPVLLD
IGLKILIIQSYPAPRWNFTKADWERYTKTLDDSIRWIPPLRENYERFLKLVLSTAKKCIPRGYRKQYIPCWTTKTEALWQ
EFITTSDRNVAHELIESLNEARQAKWESTVQDMNFTHSSRKAWHLLKRFTSGTTGQKSEPKVCPSKIADRIVKLSKAPSH
KKHTREVRKDLKSLKTDTASDPYFSRPVTADEITASIRAIKGNKACGEDKIFPEFIKDSGPHTRVWLAKFLTNIIDSGKI
PLAMKRAKITAILKPGKPADSADSYRPIALLSVMYKLLERIILNRISPTIEKHIPQEQAGFRPGRSCSDQVLALTTLLER
GFNENLKSSTVFVDLTAAYDTVWRQGLLYKLLKLIPCIKIYNVIEDALTNRPFRVHLGDKSSLSRVLNNGLPQGSVLAPT
LFNVYTHDVPETLSRKFAYADDLALVAQGRSIETTECHLENDMATLDNYFIRWRLCPNASKTEVCCFHLNNRQANKKPNV
TFRGSTLPFNPCPKYLGVTLDRSLTYSAHLNNVAAKLRTRNNILQKLTGTTWGASANCLRTSALALVYTTAEYCAPAWLN
SSHTTVVDTQLNHTMRLITGCLKPTPLHWLPALSSIAPPHLRRTHHLYAEIEKALRRPELPINRDLANFKPTRLKSRNPP
ALQAHQPHSNWNTNEAWVKEWSARCIPPELFELNPHSRPPGFKEKRPIWCMLNHLRTGVGHCNQLRKRWGWTENESCECG
CPEQTIRHIVMECPLTRFAGQVEDLKNVTEEAIDYFTNCKFKL
>Vingi-1_APis_pol#LINE/Jockey 101-2700 via tfasty with Jockey1_SP_pol, 1 frameshift and 2 stopcodons. [Acyrthosiphon pisum]
MSTKTPKRFFSGPALITTSINIEGFSNNKSDILQELCQKNTCDVICVQETHRDKYNIRPKIKGMKLAIxRPHKKYGSTIF
VRDNLKILSTSRTETNDIEILTVELTNCTVTSVYKPPNIPFKFTKLTNFENQRKNIVIGDFNSHNSAWGYNETNEDGEEV
EKWTEANDLTLVHYTKLPSSFNSGRWRRGYNPDIIFVSNNIKQQCKKKVEAPIPNSQHRPITCQIKAIIHPENVPMIRRY
NFKKANWDNFKTQLDTEINKITPIPENYGQFSNLVKNISKQNIPRGCRTQYIPGMGKENKELLENYINQFNNDPFAEETI
ITGESLVEKLSEARREKWRSLISETNMTQNSSKAWRMLRNLGNDPKNAESHINVTPNEIAHQLLKNGKCPGIKKVKPKIG
REPKNEANLLQTPFTLEELDVAMARMKEKKAPGLDEIRTEQIKNFGxQTKRWLLELYNNCIKCVKIPVIWRKSRITALIK
PVKQPTEANNFRPISLLCHTYKLPERLILKRINDIVDKSLINEQAGFRGGKSCTGQILNLTQNIENGYEEKLVTGAVFID
LTAAYDTINHRILFKKVYEITRDYNLTSFIAEMLRKRRYFVELQGKKSRWRTQKNGLAQGSVLAPLLFNIYTNDQPTPLG
TQRFIYDDDLALTAQNHSFGNIESTLNNALEEMSIYYKKNWLKPNPKKTQVCTFHLRNKEAKRKLRIIWEDVEIENTEYP
KYLGVTLDRALSFKLHCGNVKQKTHARNNLIRRLTGTSWGADPNTVRTSALALCYSTAEYAAPVWARSCHAKKVDTALNE
TCRIISGCLKPTPVEEIQVLSGIAPPDIRREIASEIERHKQQNDPRHPLHGKSPPQPRLKSRKSFLT
>Jockey_Ele8_gag#LINE/Jockey 205-1458  [Aedes aegypti]
MGRNRKQKADSASIPAPLADSGQTSAPKRARNEDANPAAYSRLLANNQFASLPVDQAPPGAKVPPLFTASKDLSALRSEL
AANNIRPLFKLCHTGTKIMCASGADYDKAGKLLKAKGVEFYTHDAPGSKPLKVLVRGLPEFTPEAIVDEMKAAGLKPTNV
FPIRRAQGGRHRDQLYLAHLEKGSTTMAGLTRVRALFNIVVEWERYRPKKRDVTQCGNCLAFGHGTRNCHMKPRCGKCAG
AHATTTCQPMEEGIEPKCANCGANHEGSSRNCPKRAEFLAIRQQASAKKLGRQRQRQPPPPLTEEHFPTPRYQVPNLPPL
QPTHRQASRQPAPSVQHRLAAAAAAPPVQNAPPPGWGNPGRSAPGTPPSDDGSLYTPEQMLEYTRDLFQRLRACRSKSEQ
INAANSVVFAFLAKYGP
>Jockey-11B_DBp_gag#LINE/Jockey 136-1398  [Drosophila bipectinata]
MDWQDAPHSIKIKPPSKKKPYSNFQDVDSSDSELGEMKRKSAKKPVREDEPTTSKAARAALKANIESNYYAILSDLEDEV
LDNGMEAADDEEVLMXSKSPKKKEIKPPPIFIPDVSNIAALISCIEDIVGKKKDFSYKAARDNQVRIMMPDKESYSALKS
QLDSAGKRYYTFQPKEDRAYRIVVKGLHHTTDIDEIKEDFRRQGHAVRDVHNAIGHITKNPLPIFFLNLEPSSNNKEVFS
VNRICHSVVKVEPPRKFHDVPQCYRCQGFGHSQRYCKLQHRCVKCGEQHSTSECRKNRKEAAKCVHCHGPHPASYKGCPA
YKKAKASMAPKDPRPAQPRRLAFQPVQHYPTVDTLSRSYADIARGGARSQQQQAAAPEMPQADQLAAFTSRVESLLERVL
DKMLERMTTMMSAILTQICNK
>Jockey-9_DAn_gag#LINE/Jockey 755-1798  [Drosophila ananassae]
MKPPPICVPKVNNVLTLERTLNEIISADNYSIRTSKFGVTRIYTDGADAFRKVVRCLTALNCEFWHHQLREDKPFQLVLK
NIHSTVPKEEIERCFTDKGFTVLNVYCPRKPGWRVHNGNVDEENNDEGSRQNLFFVNLKLTPNVSESLKVKQIGRHRVTV
EKATRNKDLVQCYKCQNFGHTRNCCFIKPVCGNCAGDHATDSKSCEALLRNQIMCANCGENHPASFKGCKVRLELSRKLK
PGARLGNLTGNRVINXSKLFSSMSSTRAGVSYADMARSNSRDSDSAETRQTFIHVQREQQNSNENLTAIEKAILDINTRL
DQLFKLVMETIESNKAFRDLVQILISKK
>Jockey-13_DAn_pol#LINE/Jockey 2160-4873 1 frameshift [Drosophila ananassae]
MNTLKILIWNVNGILGKAREIELFAHNQRVDILLLSELRLNRGEIVKIYGYSFYPAYKPARHNHGTGGAAVLVRSSLSHF
PQSVIETQTIQMSSIKVDTGLGIMVVCAIYCPPRNRIEERHFTDILASCGQRYLVGGDWNARHWMWGDTYNSPRGRELAE
STVVTGAKILATGSPTRYPYVPGHTASCIDFALYHGILDSQISIGQNWDLDSDHIALVVNLQTNGVQIRPSPRLITSRTD
LNTFKQHLETSFQLNSVLNSREDIENAVDILTDNIYRAATASTPPEPVLRPISYGIVLTREARELIKRKRRLRRRAIRSQ
DPLDRNRWHQAERQLRTVLDELRSDFFEQKLSSMDYTVDANYSLWKCTKSLKRQPFRQVPVRCPDGELAKNELEQANAFG
QHLEDRFTPFNFASVEQTRETHQSLETPLQMSLPIKPIRVEEISDVIQSLPKNKAPGIDRICHATLKALPTKAILFIALI
FNAIIRIQVFPKQWKLAAIMMIHKPGKPEVDPESYRPISLLPCLSKLWERLIANRVKRIMTENNILPDHQFGFRGGHGTV
EQVHRLVQHILQAFDDQEYSNAVFIDMQQAFDKVWHDGLLLKIKNLLPAPYYGLFRSYLEGREFKVKVKDTYSDNFLMRA
GVPQGSVLGPLLYSLYTADIPIPNSQHMVAPSKALIATYADDIAVIYNYRCHREASNGLQEYLFTLAAWCKRWNLKINPQ
KTTNVCFTLKRLIINTPQIQLEGVTLEQQNEAKYLGITLDKRLTFGPHLKSTTKKCNMRVQQLRWMISKRSTMPLRCKRA
VYVHCILPMWLYGVQIWGIAAKSNYKRIQVLQNRMLRTITGCPWYVRGSTLHRDLNVHTVEEQINRHTSRYSDRLLRHRS
LLARNLLPARPLRRLKRLGFAKTLN
>Jockey_Ele7_pol#LINE/Jockey 1778-4450  [Aedes aegypti]
MAREAITRIANWNACSLRNKAIELVEFLEEKTIDIAIITETHLKPELSVSIPNYRLVRLDRTDSEGGGVAIALRHNMNCR
LLPSLQLKLIEAVGVEVQASDGPITIIAAYYPTQASLNDGSATALRQDITKLTRRHGRYIIAGDLNAKHEAWGNPRRNRN
GVILQQGLEEGHFNILGPDTPTRLSRSGAHAFIDLFITNMVSISHPVVYQELSSDHYPVVVEVGSSVNRHLKTRRNYRRV
NWDQFRQCVDTHVDYEVRPESTDDVDRQLQAIEEAISQAREQHVPATSQVSNNIPIDRLTKDLIRLRNTIRRQYQRTGLP
ALKSDVNRMNKIIKARMLDLRNQNFSNKIRALPDCAQPFWKLTKILKTKPRPIPPLVPQDNNSPVDRLITPAEKAAEIGR
HFVSSHNLGHNIISPHEAAVNEHANNHHLIPNDFSEELEITADELSTYLKHSKNMKAPGFDNIMNLELKHLSVQFYDHLA
VIFNQCLRLSYFPSSWKSAKVVPIRKPGKDPSSPKSYRPISLLSALSKLFERAVYRRLLASVEQNNILLDEQFGFRRGRS
TVHQLSRVTNILRRNKSLSKTSAMALLDVEKAFDNVWHDGLVFKLQRYNLPSYLVKIVHNYLSARTFRVSLNGAISDAHD
IIAGVPQGSILGPLLFNLFTSDMPALPGGGALSLFADDTSIVYSGRRIRALTAKLQRGLDVLTEYLTSWKICINAAKTQV
ILFPHSRSPRLVPAEDCKITLNGTAVEWSNEADYLGLTLDSKLIFRQQVDKTVTRCSTMLRMLYPLTNRRSTLSQKNKLA
VYKQIIRPVIEYGIPVWESCAKSHHLKLQRVQNKFLRMALNAPRRMRNSEVLRLAEIQTLEDRFSESIGRYRARCRTSDQ
QVVRAIVAPP
>Jockey-N7_CQ_gag#LINE/Jockey 113-1510  [Culex quinquefasciatus]
MGRNTRGRGSSSAPRGRGRASSCSSIGKTSSSGSKRSTNLLKLPSNYVPARSPIRTRGLAALANPDQPGTSGLSTNKPGT
SSTAVPTSNGFAALSDDNKEDDDDDVSGGDGVTTTPSQAKGTSTAGEQEXKKSNKKMPPITVPGRPAVEIEGALADADCQ
YLMRINKSSVNIITRDRPRFEKVLKTLKDANIQYYTHDSPENLPVKVVVTGFSILVPPKEFVDVILAKKNIYPREAKVLS
HKVTEVGDQILWLLYFERGSVKIQDLRKVKSLEGFMVSWRYFSKRPSDAAQCHRCQRFGHGSRNCTLAPKCVKCSAAHLT
AACTLPKKASLGKDNQAEQNKRNVKCANCDGNHTANYRGCTARKTYLEALEKRKKPAPHSSRTSTGQPSTEPRQTNPPGF
GRTYASVAATANGPTPDSNSDGDLFTLTEFLSLARDMFTRLNTCRNKLEQFFALQELMGKYLCPA
>CR1_Ele22_pol#LINE/CR1 908-4294  [Aedes aegypti]
MGASGPSNTVESSTRNSNTSIMLSCHRSRPGPVFGNRLEVSQPTNEGKYESLRICSCSDVVSASSSFNCFQIVTSHDERN
NAHRNTKLNSSYHRSTGCMQQSFMEAPRPFAAVEPATNLVTDTTSSSLHHSHPVPASESGLGVFQTSLPGEHSSCSASTF
PDESLTPSNITTTTSSQPLSIYYQXVRGLRTKTNHLRSQLSSCDYDVLLFTETWLRPDIENAEFASHYNVFRCDRSASTS
QFSRGGGVLIAVHNRPQCESVEWTNGENLEQAAVRIKLSDRLLYILAIYLPPNSSIEVYNAHALSIQHIVGLLSDFDIFL
ALGDYNLPNLRWLFDEDINGYLPSNASTEHELAMVEAMFTSGLQQVNHFVNVNGRLLDLAFANLPEHLDLIEPSVPFLPV
DSHHQPFIVLLDACCDILSTCPNIGESLYFDFQKCNFELLDNAFSTIDWELLNGPTVEELLSDFNRRVYEVIQEIVPRKR
LPSTSVYSKPWWSPELRNLRNILRKARNRYFKSKSESDKIQLRELENTYKNRLSVTYENYISAVQTNVKQNPSLFWNYVK
RQRSSDRIPSNVRYAGSMAATDSETADLFAAFFENVFSRASPVPRADRFEDVPSYNISIPECHFSNEDVLPVLEDLDDKK
GPGVDGFAPILFKKCAHVLAKPIAAIFNRSIQERKFPSAWKTAIIVPIHKAGSQHLVENYRGISVLCCLSKVFEKLLHKV
LYNAASSIMCEYQHGFVRNRSTTSNLMCYVTAISRAMESKQQVDAIYIDFAKAFDTVPHLVVVEKMEHLGFPRWITSWLF
SYLSDRNAFVKVNFARSKLFEISSGVPQGSVLGPLIFIIFVNDLILKLSSYKLSFADDLKIFRIISTAADCLALQNDIDA
LLVWCDDNGMRVNSGKCKIISFTRNSTLRLHQYTIGTTLLERVQSICDLGVTIDSKLRFNKHISTITAKAWSVLGFIRRH
ASEFTDIYALKTLFCALVRSILEYAAPVWTPYHLSYSLQLERVQKCFLRFALRGLPWRDPENLPSYPERCQLINLETLSE
RRAKSQQVFIFDIITGNLDCPMLLSEVPFYVPPRSLRNAPFLANPVHRTSYGQNNPFSAGVRAFNNVSVLFDFDMSKAVF
KNRLRNVIS
>SMAR9#DNA/TcMar-Tigger 506-2182  [Schmidtea mediterranea]
MSTKRKGENKDTSAKRKWLTLEQKLNIIKLHDDGASFAKISRDKGINESSIRLIIKNKDQHKSQGIATASYLSKSLVSKH
RTSRMINMERLLGIWIEDLNQKRIPLSQMEIQAKALSLFEDLKDEDSGEINETFTASHGWFFRFKKRCGIHNVRIVGESA
SADKEAALNYPIELKKIVEEGGYQDEQIFNVDETGLFWKKLPTHTFIAEKEKACPGYKISKDRLTLLLGGNAAGDFKLKP
MLVYRAENPRALKGFSKNTLPVLWRANKKAWVTRTLFEDWFQNYFCPATERYCKENGLDYKILLILDNAPGHPTGLSDLN
EHIKIIFLPPNTTSLIQPMDQGVIATFKAYYLRRTFSQAIKATSGENAPTLTEFWKSYNIRNVIENIGEAWHEITASNLR
AVWKHILPHCANDFVGFETHFAEVTHDIVEIGRDLGFSEIDSANVIECINSNTNELDNETLLNMEEQRAFEERDSDLDNA
VAVDTPTKELSTEELSKIINMADKLSEHIMEVDPNFERSIHVRRNIGSLIRCYRELFEEKKPKKISKQTSILQFLETKK
>Mariner-9_SM#DNA/TcMar-Tigger 238-906 (fragment; consensus incomplete or for non-autonomous element) [Schmidtea mediterranea]
PSLALDQVPMDQGTISAFKAYYLRETMRQLINETDGGGKDAMRLWWKQFNIMKAIRNIDEAWNEVTQSCMKGVWKRLFSE
IVEVHCNYENNIQNIIEEISRIAISGGIEDVDEDGIHTLLKSHGEPLTNEELQEMDCHTYLENDVSKPVPVRNLTVKTIE
KALSLHNQCMELLEENDEDYERVSAVKRGCNALLDSYRQILRNKRREAKQGNLDSFIQRREK
>Tigger6_tp#DNA/TcMar-Tigger 351-2003 [Eutheria]
MDNRKRELANKDESAAKKRKVITLEVKLDVIRRFENGDSKAKIGRDLGLHEATVRTILKKSDEYKKQGKVASTSFSLNCT
RNRKPLMVEMERLLLLWIEDCNKKXIPISLASIQAKALKLVAALKENGNYKETEEEPFTASKGWFHRFRSRHELINVKLS
GEAASADKDAAVKFAPRFQGLVKAGGYDDRQIFNVDETGLFWKATPSRTYAMKDVGSRSGHKGVKNRLTLILGGSAEGDF
KLKPMLIYQSENPRALKNHDKASLPVIWPANKRLWVTITLLQDWFQSCFCPAVERYCRQNNLTFKALLLLDNAPGHPDSL
GDLNENVKICFLPPNTTSLIQPMDQGVISTFKAYYLRWTFGQAIDATTGDHAISLAEFWKKYDIKHAIENIQASWQEVTA
SNMHAVWQKLLPHCANNFAGFESNVNGVIEEIADRGNVDTAAVRETLDMQPEELSEGELIDINEESGCDEKDEDVPEEVT
PAKNFTLKELSEIFHDIESAKDKMLEADPNLERSMTIRQGIEKMLAPYRKLYDEKKASTVQTTLDKFFTKK
>Zator-3_HM#DNA/Zator 669-3023 [Hydra magnipapillata]
MNNSEKYKIIYQQVAKALPQKSKQEQQKEANKLWYKVKHKELTYDSVLKELTRKTMESKSQLMSFWSNVKTSNNQSIAVK
LPLTNEISDEGPEALLTSDEADKIDFEINKTLATSSKFDIQKSQKSQTEVPIDQPTKSHTPQQEKIQTEISQLKEQLLTL
VNVRRAGLITDELKIKSIFLEKQIKIKQNRLKKMKREAIRQRQRRASLKRTLNDIVDDTPYLKSKLSKFNREKNGRPAVI
EDQPDLLNAIVNIASIGAAASDRRRSQELRSCKTLDDLNKSLLKLGYCLSRSATYLRLMPKRSNTLEGIRHIKTVPVKLI
RTANTARDRHIDAGFTFACMQYMDEVCSIFGPDSCFYLSLDDKAKVPLGLAAATKQSPILMHLDYQVRLPDHDFLVASRH
KLIPSVYAACIIDPNKFADAVSYSGPTYIAIRSMKHDSSTAFTHGRDLERLVSIENFKLHICTPEGQVKPIFVVACDGGP
DENPRFPKPLQVAIARFIKWDLDVYLTGTHAPHYSAYNRVERRMAPLSRELAGLVLPHDHFGTHLNASGKTIDVDLEKKX
FAKAAETLAEVWSDIVIDNYSVCAEYVEPSQLSPIPEQDSKWIENHVRQSQYFLMIVKCDVPNCCKPWRSCWKKYFPQRF
LPGPVVMSHAAEGIFIPEPKVARNIPKPYFSSLAQRLGYIGSKISMEASFDLYCPSISQQKIDQRTCKSCKIYHASKASV
KRHKCVFRNIINTTSEENKNDDENNDTHLTVNESNSDQIHVIENIFDWVKSPFDLDHQQFKLID
>Tiggu2_tp#DNA/TcMar-Tigger 335-1932 wised with Tigger3 & 5 [Takifugu]
KRRRAFLSIQTKQEIIEKHEKGMRLVDLAKEYGRNTSMIATVFKQKEALKAATPSKGLSVxSKRRSAVNDEMERLLLVWI
KEKEIAGDTVTGAIICEKATAIYNDLVTEDAGEGTSAQERHQEFKASRGWFEKFRRRTGIHSVLRHGEACSADHKVAEEF
VQKFKQLVIDEGYVAQQVFNCDEMGLFWKKMPRRTFITEEEKKMPGMKDRFTLALWCNAVGXQIKPLLVXHSKNPRAIKA
XQNNKENLQVLWRANAKAWVTRQFFVEWVNLVFGPGVKRYLEENNLPFKCLLILDNAPAHPPGLEDDILEEISFIKVLYP
PPNTTSIFQPMDQQVNSNFKKLYTKPMFKRCFDITENTQLTLREFWKQHFDIVVCLKMSDMAWQEVTRRNLNAAWRKLWP
DVVAPRDVEGFEVEGEVEPEVDXIISLGKGMGLEVNDEDINKLIQEHKEELSTGELKALEAMQHTAVQEEFGEDEEEATR
IKDILGKFHEVSEFVPEKVGLLLIMMMFAFHIFEGFSKADKSKRPWISSLRNI
>Mariner-8_Crp#DNA/TcMar-Tigger 184-1845 via tfasty with Tigger17_tp, 4 frameshifts. [Crocodylidae]
MTLSKKVELLDKLASGLSAASVGRMYGINESTVRYIKRKEENIRDSVAASAPSGAKVSCVSHDPIMEKMEKALSIWIEDM
AQKRAPVDGPVIREKALSLWKYFAEAASGGEGGSDGSAISFSASKGWFEKFKKRHSLHNVKLMGEAASADHEAAEDCPPQ
LLKIIEEKGYKPEQVFNADETALFWKRMPTRTYLSKEEKKASGFKVAKDRLTLLLCANAMGDCMVKPMLLYRALNPRALK
GKNKHSLPVFWRSNRRAWVTADFFWDWFHNCFVREVEKYLDSKGLPFKVLLILDNAPGHPQSLQFAHPDVEVVFLPPNTT
SLIQPLDQGVIATFKAYYTRRTFGQIRNALEGDQTLDVRKCWKDYNIANCITNIKESIDEIKPSTINACWRELWEEAVND
FTGLPSVGEEIKRIVGMAHDVGGEGFEDMEESEVEELIESHTEELTDEDLAELMTSSEDEDDENENEETERPNFNLGTLA
ELFRYGKQLTDKMFEYDPSMEWSLKVKREIEAAMVPYREIYKDLQKKAEQLPITMFLCKPSPVNPPKSFGHHLC
>Tc2_FR2_tp#DNA/TcMar-Tc2 542-1147 [Takifugu]
CFRFMRRRHLSIRARTTVAQRLPADYQERVAIFPNPNQERAAIFPNPNQERAAIFPNPNQERAAIFPNPNQERAAIFRTY
CRDKITAPSHITNMDEIPLTFNIPLTHKVEKKGPARWRYAQRGTRSRRSPWFSAATETDRALDDGRRTLLHKDYEAAAGK
LCHHMRVDCRRMGYDTVFMYCKSFHKINAEPEPVGESDSDD
>Mariner-10_Crp#DNA/TcMar-Tc2 439-2415 via tfasty with Kanga1_tp, 3 stopcodons. [Crocodylidae]
MLWGEAGQARSREGPAGAGQHTGRRDPASTRQGRTPRGHTRHPACCREGPDCSDKGPSTQQGTQCMARLQAAVGRDPACS
ETPSSGSKGSSTWQGTQHEARHPACSGEGPGSSDKGPRTCMLMRDPAHDKGPRSGDEGPSMSMPVRDLAHSKAPGSKGTS
IQQGTRQQQGKWQQGTQRRGRWQGSTWWSSRESSRLQGLITTDWPKFKTIETHGKFCGVSGGRETPMTDHVEKRGSSGTN
VKIPKGMRCSYDTNFKMKVINYAEKTNNCEAGRKYNVTEANVCRWRQLKGKLENAKSTWKTFGGPKQGRFPEIDKQVLKY
VQEKRKEGMPITCEVLRLKALEIAKELNIPLQKFKASSGWCIxMMQRSGLALRxRTSLAQKLPSDCSKKLVEFQQYIIGL
RKTHDYLLGQIGNADETPVYFDMLSNVTIHEKGAKSIIMRNTGNEKLxITVMLAVLADGRKLPPYVILKCKTLPKEKLPP
GIVVRCQEQGWMSSELMNDWLDVVWKWRPGALLKKRGMLVLDSFRGHLTPDVKAKIQSMNCDLVVIPAGMTSQLQVLDVI
VNKPFKDHLRCQYSDWLLAGNHVLTPGGKIKKPTIALLCQWILTSWGRISSESIIKGFKKCCISNAMDGTEDDVLWEDEG
EDGNSEECESEDACESDQS
>NP_504631_tp#DNA/TcMar-Tc4 gi|17563940|ref|NP_504631.1| tc5 transposase and CENP-B protein and Tc5 transposase, C-terminal family member (5G898) [Caenorhabditis elegans]
MTFSIANVIFLLRKKFPDPLPSAPSITREEEKMATHCWNIINQAVDGDIEVYEDDDAVDDNHEDWIPEEFEPSDDVVLAS
HRDVMFGDRSITRELLDEAIVFFRGTKKGSRTLSSMMEKYKWIKRECDLSKLRKYEKERDDFTESRTNLLRRLGKTLYEV
VKDKLEKGMMIHDSDLASIAREINNNETKVENFIASSNWVSKWKKSHRIVSRRITKFVTRRCMRDKVAIRKTADDFVRDT
KREMSPFDPYMIFNADQTGIQKELYGARSLAFLGDKVVERLVQAKSSLTHSFTFLPMIFMNGSLGPKAFIEMSEPATGCF
PPSRPIPKCPNLEVRAAKSHIMGKELMCDWIKTCVAHASLPKRLLMIVDSWPSFKDHATIQQCFPPGYDVTIKNIPPHTT
SMIQPLDSHWNGPWKNLIKKFTTHVLNFHPDFLIANRNNEIWMISLLYHQVSAREFQSFMMYSWKRCGYLDSTDTFLTPS
QHCFGQVEGQLCYFAGCYNLAFIFCARCKEYICFSHFIVDEKHLCPNCRFIDKICQKIC
>Mariner-1_Crp_tp#DNA/TcMar-Tigger 823-2610[Crocodylidae]
MAEKHKSGGSDVSSSKKRRTITMETKMEIIKRSEKGETPTEMGRALDIPRTTIVTILKDKARIQEHVKDSAPMHSTVITK
QRVGLIAQVEKLLIIWLEDQNKRRAPVSLGIIQEKARSLYDDLKKQQGESSNAEPFTASKGWFMRFKARANLHNIKVSGE
AASADEEAARAFPETLAEIIEESGYCAQQVFNVDETGLFWKKMPSRTYIAKEEKSMPGYKAAKDRLTLLLGANAAGDFKL
KPLLVYRSENPRAFKGHSKAFLPVIWKSNPKAWVNKNIFEDWFNHHFVPSVRDYCSKNNLAFKALLILDNAPGHPTILDD
MHPDIKVVFLPPNTTSLLQPTDQGVIASFKAYYLRRTFAQAIRAIEKEGGPTLKEFWKGFNIYHAVKNIGEAWNEVKQSN
LNGVWRKLCPKFVSDFQGFTDTVEEVTKNVVEMGKELNLDVAPEDVDELLASHSEELTNEDLIELEQQKVAEEEDAPTVE
ETPPRKVLTTKVLAEAFQHLEAAMSLFEEHDPDIERSASVNRGISSMYSCYREIYKQKKRTSVQTSLRTFFKKADKTPGK
PAAKTPEKTPAKXPSKSPAKNPSKSPAKSPQRSPSK
>Tc4_tp#DNA/TcMar-Tc4 gi|17508201|ref|NP_490691.1| variant Tc4 transposable element expressed in mut-2, not in wild type N2 (1A661) [Caenorhabditis elegans]
MSFDIGNVMFALHRHFPNPLPSNPSISRHEQKVADHLASIIKESYYGDTSVEESEYLVQEEYGDWEPEVFEPYDCVLPDQ
DDVLFGEKAVSREELDKAITFYRSGKIGSRPITTMHHSYRWIRTDAHMNKLRKYEKDKKAFQESVRVRLAQLTQRLYEEV
KEKLDNGVNLHDSDLMAMALEINTREMKLQKQNEMKLQKASQSWITRWKQSHRIVSRRVTKFVTRKCLINKDAIKKNADD
FVKNARTEISNYHPSMVFNCDQTGIQKELYPARSLAFMGEKTVERLAQSKSSLTHSFTFLPMIFLDGSMGPKAFMVIAEP
KGQFPPSRPIPNCPNLEVRAGYKTHIMTKQLMCDFFESCVFIPSVPKKLYIMLDSWPAFKDHTTIKNLVPNGHDVVIRNI
PEHTTGMIQPLDVYWNAPWKSLIKKFTAYALRTQTDYVIAQRNNAICMVSVLYHQISAEHFRPFLQHCWKKAGYVGAANT
SSTPFLTPAQYCIDHGDTVICYHTGCNHLGFIRCARCKMFVCFNHFVVSKQHLCSSP
>Zisupton_XM#DNA/Zisupton gi|343888580|gb|AEM65782.1| zisupton [Xiphophorus maculatus]
MQKPGSQQKMHVSICNTGIGAKIVPYCMNNKYYCPLCSYSADESYKVKNHIARTAVVQHNEFHIFRCGLPCRDTTHFHCP
YCFSTIDRRDRFVNHLVNHRMTFHMVSSCAAAQPPVHLPATDIQATQAPVRPAATDIQATQAPVRPAATDIQATQAPVRS
EDMITCEMCNLRLRKKNLRIHLKRKHHEKVELISQNHHLRSQCVDAKKGVFAVQKSFCGPSKPIHVIKNTWSQFHRSECE
LDRCNVNAQFAKRSGILPFECEHIQSLRFCPRATDSEGPLSETTLNILVDNLWFSVKRKEELLKNQQEALSSNTPFSVLL
FGSGTDTTFHVSIFEPKMAFFSRLGRVIVTYDKGKNTWHCACTEGKRSCTHKATAKWHLFEKMPDMFKAAVHSEEDVMCG
TTVSECQEESGSITDDAAERIIKYLIYHKKIPADLPDSLITRSRDAKSLNGFPKHLIPSETECTECGQHASLGDPQLLSS
TAKIVTLTGVVKGISTYRKTCPNCSMVYRYQDWEDGIHNFNDHLLLSIHFCLVLRNALQTHTAVSRIIETIEYTEGENFP
FKDRILQAYLSFEGLSDHDYQYSCDSCGYHPAIVVMDLHKKGVFSMPVSEIPNPPQQYNGEVNARSFWEAVTMEVISRGL
YPPGCKNPFVVKPTYHNWSPWIGPQTRRSDILINTESEKVHLPDSDSDVDQFLTEERLADEVLNLKLPEIRRLCSQCGID
SRGSKMDLVLHLRDKMASRATYNKVFEKVWGASGGWAVITCPCGIIYSVKFNLRAESPRDFADLLLSWKFFPNITVYDYP
RGLVSHLKKRCAKDTPFTIHDGRLVEATPENIRQATEKKLAVNLPWLKHRKEPEDKGGHPVTGSLEHYCLSDVFHQGNSK
DEKDVLRKIEMVPELAGRLNSQCAEQLFAGMRKNNYFLNMLNPSTHIFLQRNILHHFNLRKNTKTKQNILKVAGPHANLV
LDKNGCIIMGCEKNQQHACSLEASVIQTHQCSLDDSLTSLQTTGANKFTWTQKPNNTEITLLAQVLDQTRDPAEYVACVD
GQVLTRGDMFTLGLSQDMNGQILNSCLKVVERMCINKGIKVFAGNSHVVHTWFPPLSLDPAQHLPPQAQDLDWVLIPVWH
PGHWTLCILKPKHREIFFLDSINGTGFTDENRIRTLREVCLQMSSGPWTEFVGNDVEGLPKQGLSNNCGMFVVMYALYFV
MGASFDFSENDMMTIRRWWSLTLLTNFPVKSREELQKERKRKKVEEREKCETLFADDHNYAKATEAQIEVQSIPPILQMP
LIVLEAILQEVILAQGDTAYLTLALTCKSFEAIVSDPVFRKKTHFAWLDGEINWENFSESFKAENRIPFAVIQCSSCNRQ
YKDSVGFTGHGRRGEFPRYYCDGIPGHCPECQY
>CR1-1_DVi_gag#LINE/CR1 457-1443  [Drosophila virilis]
MSCCKKPCTFKQADDSALPQFVNCWLCENMMHAKCAGLTGRDCDKIAAIAKKGCGGLRWSCPECIDKQIDFSRMYNSVRS
QFLKLNNVAKQLSSNFDSSFELLGKYKFESPTNRRLEPQLLQLPSTSVQTPTTFLSLPSNLEVSPMLSLSPSPSDCPITP
ASSPVLDPVEPVPDSVPINQTASAPSAPGRKGRPARNLAQIVKSNHCASLAPPTPVLPTAPSAPTLTVVAPRRQVFVSRL
SSDTTSESLAAYIASKSSASVSITKFNFSTPREISSFKINVSHDMFPIICDPKFWPPHMIVHEFKPKKRNQPVTLPVPSI
QGTISAPKN
>CR1-1_DPer_gag#LINE/CR1 548-1558  [Drosophila persimilis]
MEFAVVCAKKTCKKQITHDQPNVPCWLCDSVVHAKCAGFSGLVSDAIAKRNGLHYSCEACRAVEKDMVAFMRQTRSGFKE
LTVGFKNQYDRLLAMEAQFSGLKLLNESPRRKKVTPRDLQVPTVTQPCAAEKLTPTTPSVQQLISFATPKATKAAGDADS
VAEFIASENVQPSTSAASVSVVSASSLVVPSIPIPPVNRRSGPPDIATTGTRPAVTKPLVGVPPKRQVFVSRLAPDLTSN
DVTAFIQSKIKAVGLKVEKFNFSYAREIASFKISISPTQFDTICSTKFWPEHLVVKEFKAKKKNRPPISLPNLSSVPPST
STSSSSTSRLAPTFPKN
>CR1-2_CQ_pol#LINE/CR1 1765-4701 [Culex quinquefasciatus]
MTPSCEASDNLILTSPTTASNNLIEILTYCQNFNRMKSAAKIDTINQAISGCLYTAILGTETSWDASILSEEVFSSNFNV
FRNDRNLLSSGKKSGGGVLVAIKTDFDSEKLDSDVFAHFEHVWVKAQIAKETHIFASVYFPPLSPLSSYEDFFRNAEKII
SSLDPESKIHLYGDFNLGAVDFMVDAENESILIPILGESDRLQVIFDKMYSLGLNQINHVKNQNNRFLDLLFTNMTEDFC
VTEANNPLWKNEAHHTAIEFSLFVHKANNRPDGSDYEEIPDYNNANYPLIKRRLLEVDWKALLEKETNIELAVNTFYSII
YDILDESVPIRRKRRTIDKHPPWFTREVKNLKNRKQKAHKAYKSNSQKLDEYLQICSQLEVTIQFEFEKYHRKVESEIKS
DSKQFFNFVKSKLKSSNFPSNMSLDNKIGKNSAEICELFANFFESVYTSFDENDRDRSYFSFIPQANNEITVDSLSLDEI
QAALKALDSSKSTGPDGISPKFAKNVASELASPLYWLFNLSLKSGIFPSAWKKSYLVPIFKSGKKSDVKNYRGIALISCI
PKLFEAIVNNKMFAQLKDYITQKQHGFFKGRSTATNLLSFVNYTLNEMDNKNSVQTLYTDFSKAFDRVDIPMLLFKLDKI
GIDSNLLSWLKSYLTKRTQCVKFNGLISRLINVTSGVPQGSHLGPLLFILYVNDVSFIFKHINVSIYADDMKLFMKIKDE
TDASRFQNEINIFFEWCCRSLLQLNIKKCTSILFSRKINKPNINVKLDNQIVETCSNVRDLGVILDSKMTFIEHYNTMVF
KATNMLNFIKRFSYNFKDPYTLKTLFIAYVRSILEYCSVVWSPHIKTHETRIESVQKQFLLFALRKLGWTVFPLPSYIAR
CMLISLETLVKRREFASLSFVNDLIANRINSPELLQTLNFYEPTRVLRAREPFALHFHRTDYAKHGPMNRMMETYNKYNN
IIDFTMTKSTMKKQFYNQR
>CR1-2_IS_pol#LINE/CR1 3-2294 [Ixodes scapularis]
RQHNNILNDQGNALDLCFSNTDGIRVARSELSMVPEDSYHPALDVVLSVFDPPVLSPSNGPSPHTSYKYSAGDYTGMYHH
LSGVDWASILESSDINGQVYLLTTVVQEAMDMYIPLKTSKKSRFPIWFSRELRTLLKRKDFLHRRFKKSGLPKWEVEFKI
CRKRCKKILNRDRQAHSDSVESDLVKNPKKFWRYAKSRLGKNIESEIVLNQHSDSAKGMSELFADHFASVYINNNNCSSS
ILPHSDVFGDSLGSVVVDEECVRLCIKKMKPTLSAGHDGIPAAIVKAYHELLTPILCTIFNNSLTSGIFPDDWKLAVVVP
VLKSGNSGDVLNYRPISLLSSFSKLFEMVIHQFLSFKFRSIVIPNQHGFMSGRSTSTNLVSFMSAASEVVCNRGQLDVFY
FDLSKAFDVVNHNILLYKLSSYGVCGSVYNLLKSYLSDRXAYVRVNNTTSSLYKASSGVPQGSVLGPLLFNIFVNDVSRV
ILNSSFLQYADDIKLYKKISTLEDCIALQNDAYSFGRWCLDNDLRLNHSKTKVMTYSRKTHDIFFPYSYHGELLSRVSEL
RDLGVVFDSTLRFDTHVIRVVQSALRTLGAVSRITKEFKSPSAFFTLYCSLVRSQLEYASVVWNGISKTNSSSVERVQNK
FISIFKYRYLENGDPCLNGVCNSQLVNLLSLQQRRVKADLLFLFKTLHGSINSPSLLSEVSLRVPRVPTRLQSSFYIARH
FSNLNPIQRSAECYNRYSDTIDIFNSCGSKFGNAVQIFLLQEKG
>CR1-2_DEu_gag#LINE/CR1 430-1371  [Drosophila eugracilis]
MSEIVCYLKSCNKIITTNQPSVLCWLCDNMVHAKCANFRATVSDVLARGDSGLHYCCESCRGTQREMRSFMRQTKNGFRE
VLGAFRKASDLLTALDTQFNNVQLLNESPKRKKSNSCVPQITSSLLAPTSYLQNTEVSPQLFGTPLANTPVSTKNSESEF
SGHDGRKSLDSLSASRLLAPTEPISININPPDTPQGNFVPGLPACTGGAGSEPATPKPLKVIPPEKHIFVSRLSEDTSES
DVLAYIQARTKADIKVDNITKFKYHYNRIVSSFKIRVPSVEFDKMCSTKFWPEHIFVQEHRPGHKKRKLIDLRR
>CR1-1_DEl_gag#LINE/CR1 52-892 via tfasty with CR1-4_DBi_gag, 1 frameshift. [Drosophila elegans]
MTPFTCSECNVAVTHAQLRGFEAVRCSSLCHRTFHTSCVNLPEEAIKLLTIMPNLLSHSKTDEIIEELRELKSLYLHLNT
XFQIAFPESADAPANVNANKRKKEKVANKPPASSTSHHTNPVVSDHNPPNEGFTVVSKKNKKNRNNKKHIIGSALACDQL
AVLPSKRFLHIGKFAVNTKPEALCKFVSDKLKVNSDTISCYSLTKKDVDLSTLKFINFKLGVPEQYYQTVFSGDFWPQSV
KVSRFIHREREHLESTVVDTLGXEPLRTSTPAKLQSKNPQ
>Ambal-2_TP_pol#LINE/Ambal 4108-9987 [Thalassiosira pseudonana]
MRRFRPLSIRDWFTSGREEVTEDVELEEITAFGGNSDCKLDNNLRFAFQNVNGLRLESSGDRSELAMTIETLGIDIFGMA
ETNIHWNQEKTAVLSSLLQLVFGTGQIATSSSRTNGDGYLPGGTALIARGCSTGRICHRRGDRMGRFSYMALRGAEGCGV
LFISAYRVCQSRGTLAGPDTAFMQQVEALRALGVHNPDPRDQILDDLTELISEWAAKGYHPLIGLDANASLDEARFSRFL
DRNHLIDVVGHVTSGDPPPTYSRGQKRIDFILGDMHVCEAAVQGGSLGMHEGLFSDHTLQFVDFDQTRLFRNETYTPLSV
QERQFTLNNSIKKNAFLKKLYEIHSHQRIGDRVAALAQAFSEEGTTEDLVQRYNRLDYEIRCSILAAANTQARKKFGYQW
SPALVKAGMMTRLWRSITSSKRRRTQVTALAQQLANLLDMPIEKIDDLGIAACHSNLHAAVRRLRQVQRDDVAERLQWLE
SLAQEAAVDRPGEDWQLILRRLVTATKSKALHRKLTAILKPERTNLDHVDVPLERWYYSPSQDEVYEFDDGIFRAHTRIA
EDLFDTHAVSKVLPADATVVETAVGNEGVRMFTPSLPSAPRWKKITKASEMEDWLLRRNKRHLQQMYLEESPPTHQSFTT
ITGQHGTSETVDAILEGGYNIDGTDLPLQMKQWLKTMQRTPQEKDLTIQVEMTPKQFQEAFKAADEKTSSSPSGLHYTLW
KAIAEKDDLCAYFSTVLNLPFMYGFVNDRWTKGIDVMLAKQHGNSQIHMNRLIGLLEADFNTALKWYYPVQIMGNAESSG
LNPNQWGGRANRTATMCATRKLLLWEYARYARRTTASFFGDLSSCLDRVHTSISSMVSQKFGMPKTVCECRAQTVKTMER
FVRTAAGTSTKSYRQEDEDIPLSGEIQGKGDIMALWTLQSHTMLETHNSQCPGVILEHASDDTVSERTIDAYVDDADNYA
DAPETNDADEAITRLQTSAQVWADIVAATGGLMAFHKCNWQILVFTAVGGYVLYRSRTKFQDREIYLRNHKGLRSKIEYK
AHTAANKGLGVMLCPTGDQKAEFARRLQQTRECVARIATSSLNITETETYLTLKTRVLPKITYSFPITSFTVRQLKSLAV
LIDNAFIPKLGMSSKMKRIAVYAPLELGGANFPSIESLQDQMGIDHFVRSVQWGKELATDIRIVLSRVQLYSGLCTPFLE
DCSIKLRHMEDGWLLHLRQRLAHLNGSIWVEEAWTPKLQRVGDASIMEVLTNLSDVTTGELIAANNCRMYLRVITLSDIT
TLDGRMIDKGLIDGSTRTESRLRWPMQPKPTVRMLDTFRRLLKRAFSTNHRLPSRQNISLATPLGEWLPVERHINYMMYR
TSNKLYLREYVDDLEALPQVDPTGDVVTVPQLDTGIIWQYSEHPTGNYFLREQTIATIPPQAHPVSGYFRDERFFASSEY
VMQPPPPNPPKQFPPTIVGESVLRNAQRLTVVSDGSMDPISGQAAFAWVITQQDRSGYIKRSKPIRTNPKYMSSFRSELE
GVHDVISYLVTHHYTGQKIDLWCDNKWCIDALNKPGDFLDELGKAEGALLKATRNLLTEFVDITLHHIYGHQDDNNSYEN
LEFESQLNVDCDGEAKRQMRASSISGRTEAEPGTGAMLYLGDDMVTSHMAEQIQYAGQAPKMFEYIRERFEWTDHQCCSV
NWKGIGAAKKRLTRPVSNRTTQMMYGWLNVGHQKIKFDQDGTCPCCGQHEEDQLHLYRCENVLMRETLRQGIQDMERTLY
KVGMASPVYLGFIDAICKIVQLPRKTYALHCSHTLRAIERQESLGSDAILRGLHHVEWAYTLQSTWIPPRRYDDGTMEKK
RDPFELSTVLIGETWKLFEGQWKMRNTILHSPDSFLLASEMTQLDRRFVEYKRNKTQLLAYQDHYLIDIPEREFVKWERD
KKKKLLRLLETCKAAFIRECEARTDRQSLITTFFRRIDPT
>Ambal-2_TP_gag#LINE/Ambal 894-4118 [Thalassiosira pseudonana]
MQRAISRFSVETDLFPQFNARSSPLQYTTLMGDLIERLGTARQEDASLTSKSSRKIIFEIMTVYITRMIGDGTDERKLFD
MLKSAPPKNLVTMLTSPNALYFFLYQRGEEKWGDPNKFEWNPLRVQRNVDFARITLAPLADDLLTPTSPSSVMEEATKSH
SDQEEFGGEGGDEGFDHSSQQHSLSDRGKVTHSTDPEDWIIQEHKLRDPTKHMNLDMLRISQMYESNDWKSEVYPAVESY
LTEHYSPYHSDILTQVQQWHLPVLMWYLREPGALAEAIREMGLERRKAIRDGVPNAHHLRMYGRDLHSSNDVATFQVTLT
GTLRNGSIASTVREWAEYVLPLVHSMNHTMSIEPITSDRPGASLFDASSLPTADKDLLERYARLHDSTASDQRVRVTMRV
QTSLDLGKLGLTNSLIAELESAKYRTWLQDVVGMAVSVERCPPPNFAPDVMILHSTQYDVEDDIRGEISRQMWEEVGYEL
LPTDCRFRFLTLRAPQLDTIVDRQASAVRQARMMCISFNPSKAEELLPQFLRLNQSSRSRYEARATHDFVYFPGHTSETF
STEEFAEVVDKQQQFIDERLVATVKGVPVTVDLRRLTGPQPKDTDRIEDTEAMLLEDTVFLYISHHTREHVFTPFAKIWP
LLTTGGRMTGKYVFVGTKTGFPVMKEYLLEHFHSAMVDEFPELDWSQLTITLCTPPHFHGPATVIFPPPSPPEPPAIDDA
VVRLPGTVTPAPKTRGGTVKTIGVSPANPLPRVKESPLLHIPVPSLTEQRIREIIREELQDVLNLDHVAREAASHAIDSL
LHRLDRRDRQWQQDFVPHAVDLISRSVISSLDTARSHRDMPDVTIAASGDPTATDDVHTTSPSDKANGMCSHTTPPRRSA
DNTTMFLTPGDRVEDSFATGVNAAFAKSAVRLNDVIQTLSPIEGATGPGDGALPAESTPVNTTLDSLYRIGKEWDTDSED
GKIGVLSDSPWKNEEGVPLAISNLHRSRRGDSNQPELRPLKSRTGTQSTLHPDAATEDTSASTATSSAPTPTVTNLTNPT
STGIAGRTRKASKQAALATDLDCEFSISANSDEKI
>Ag-CR1-7_pol#LINE/CR1 1216-4143 [Anopheles gambiae]
ITAAIATLLTHSHSKSPLKFYYQNTRGLKTKLSDLRISLEVASYDVIILTETWLDDSIPSSLFCDRKYTVYRCDRSSANS
TCSRGGGVLIACSAKLLSLHIEVSQCSLELLWIQIKLNGHSLFVGGVYLPPNLSSNTDTLDSFFNTITLIQSRMKDRDLF
VLCGDFNQPGLSWSQNEDYFAPLAVNPASSYFIDGLAEFNLRQLSGVVNIFRRQLDLVFVNELVTYSCSPVSCSIDPIVK
LDHYHPPLEFVVNVPLPHNGNNVRDNKSELNFRKMNLEKFREIITNSDWNFLEIRTDSPSTVDVAVEQFSNIVKAALPLC
CPRSKPSSRLPWYDATLRSLKADRTRALKKLGSTPSEYNRRVFKYAASAFRIYNRASYRLYLGRLQCMLYRNPKLFWSYA
KKRRNPSSLPTSMSLGSVTTDNAADTCSLFAEHFANGLSRPESQPLTESEGIWPGLNSVAWAEGIVNVNTVSEALKKLKP
SFSPGPDGIPASVLKKSPFLFVPLLVKLFNLSLSSSSFPLLWKRAWLVPIHKKGNPSVISNYRGISIQCAITKVFEHIIH
TYVFKLTSSTIIPQQHGFFPNRSTTTNLMSFTSFVSSQLESVKQVDTIYTDFKSAFDRIPHSLLLNKISQLDVNNLFVSW
LRSFLCDRSYSVKFNDMFSTPFSCSAGVPQGSVLSPLLFIIFINDVRTTLPPECFLCYADDLKIFLPVSSPRDCISLQNI
LDRFSSWCSSNSLTLCPDKCNVISFSRSQSPITYSYVLNSVQVNRVCVVKDLGVLLDRGLTFSHHIDSVVNQARKTLGLL
KKIACDFSDPMCLKTLFCSLVRSILEYCSVVWSPTARTHVERIERVQRSFTRFAICKILGRLSSPIPPYEDRCRQLGLEL
LENRRSHAQSSFIAALLLGNIDSPSLLSSIPFYAPNRVLRNRPPLVIPSRRTAVGRNDPLLRAIRRFNCVYSMFDFNLPL
SSFRSRIRTLHNPVLP
>CR1-1_DAn_pol#LINE/CR1 1017-4373  [Drosophila ananassae]
MHYLLQQQQLIPRWAVCILSSLVDLQQQQMVRYRLIVSPSLFILSFLDGWSTVRLTTRAHFSASGGNVCLHHGLERRASL
RVDAQNSMSSISLAVPATGFVGRLDIHMSNLEINENLCVSTLAILEAMRLGYVASSIRTLPVPSHIPHSRPIPSVDCMDR
AALGSNKSLRVFFQNISGMRTKSRMVLLNSSVCDFDVIVLVETWLNSNFSSSEFFEPKMFQVFRKDRDSSSTHCERGGGV
IIAIRRSMLATVVSLKVGDPILDQLAVSIQGIQGPFIIIASYIPPNSAFSTYQAHMENIASVYGSMEDPMALMVAGDFNL
SSIVWTWDPESVGMLPSNVHQSHEIVVLDDIFSMGLSQVNNIYNDLSKILDLIFLNNVVHSKVEICNVPLSPCDMHHKPL
LIHIEFYSFLPSPSPISYYHFNESNLSLINNAIVSFDWVSLFSDGTIDDCYTKFLIALFNIIDNNASVRVRRSFKLPWYT
EGLKNLKNRRDKFYKRFLKTGELMAGELYRQYKREFEFLNKFLYNQYITDVEASLISNPKAFWRFVNGKKSSSDIPSAMS
YGGLAANSDKGISELFAKYFASNLEPKVSWDEREVLQKILPLLEVGCLDILDCDIVEASSHFNESHTPDLDGISPFFIRK
CIASLTTPLQLLFTLSLSSGKFASRWKITSISPIHKGGSRADVTNYRPIAKICNIAKLLERIVTKKLTFLIRNFISHNQH
GFLPGRSTTTNLVVFSKHCLEAFERRCQVDAVYTDFSKAFDKVCHAALLAKLFRLGVHSSMLSWLESYLADRPCHVPIGD
ATSSPFIASSGLPQGSSLGPLLFIIFINDISSCFLYSDFLLYADDLKVFKAISCIRDSYLLQDDLRRVSSWCALNLLPLN
LAKCHFIRYSKRALDLCTSYAIGNHDLQLKEEVVDLGVLFDSNFKFSSHLDFIMPKAYAMLGFVKRHTDQFKSPYAKLSV
YAAFVRSRLEYASIIWSPANKISSNRVERLQKKFLKFALLPLRFVDPLPSYHSRCLLLHICTLEDRRTVAALTFINNIVI
SSIDCPMLLELINFNVPQRDLRSFAPFRIACRRANYLLNEPIDRALSFFNTLPPSLRTKWGSDKQAFRVLLVRHFLSSM
>CR1-1_BF_pol#LINE/CR1 1311-4778  [Branchiostoma floridae]
MELHYTCIFLALCLMIGKTQPGSQPKDKQEMKEVHVTCTFRTDCTSDWATFAFMIKHSGVNGTPFSHKKTMIHNDSTKLS
LIMILLLSGDIEINPGPRPPKCPCGSCNKAVQNKHAAICCDDCNTWYHKDCIELGSQVYTVLATHRSYSWICCDCGIPNF
ASDMFDITDDSFHSVNSFDTLNSSTSLPGDTPTATSTPLRSKQGKTHTRGNGHKKGSKAKLLLVNCQSVRNKTAELATVI
DTYKPDILAGTESWLNENISSSEIFPDSYIVHRKDRQTGPGGGVFQANRDDLIVTHRTDLDTDCEIIWTQTQLAGKKPLM
IGTYYRPPSDQGSSLDELDSSINKMGTKINSDNVIIFGDFNTPGINWDVSTTDNAQNHTGQAQKLLHLVDNHGLFQTVQE
PTRNGNILDLVLVNNPNIIEKTTVVPGISDHDMVLVDVNLAPKQNKKPKRKVYIRTKSDEPAIKNDLEDYATNFNQRTKD
MSVTQKWDDFKGKMKHTMNKHIPSKMTSSRYNLPWFNRNLRRHCRKKQRLYNKAKRTGQEEDWNKYKKVKKGVQKSIRSA
HSKYVANILGEAITDKPKTFWSYIKGLRRDLVGVATLKVGSTIISDSEKKAEALSSQFKSVFTEEDTTDMPSLGNPCTTP
MEHIDISTYGVEKMLQGLNPSKASGPDQIPPWFLKMTASEIAPVLTNIFQQSLDTGEIPQDWRDANICAIFKKGDRAVPS
NYRPVSLTCISCKLLEHIIHSHIMKHLEGHNILTDYQHGFRAKRSTETQLILTVHDIAGALNNKRQVDLAILDFTKAFDK
VPHSRLITKLEYYGIQGSTLNWLKAFLTNREQTVVVEGKASAPVKVASGVPQGTVLGPLLFLLYINDLPDQLDSSVRLFA
DDCLLYIEVSAKNDSQLLQKDLNTLEEWQRKWLMQFNPDKCYIMHITNKRTPNVSPYQFCGQTLATTKSHPYLGVTLTTG
LKWGVHVNKITTKAKQTLGVIKRNLWACPARVKSLAYTSLVRPNLEYAATVWDPYTKKDKDKLERVQNQAARFCTNNYNR
DASVTKMKTDLQWTSLEDRRKMSRLCMMYKMTNKLVDVPTDKYLIPAQKRTRNSHDFKYQSFQARIDVFKNSYFPRTIVD
WNLLSPSTVGASSLDSFKERLQLDVQKLGVTDRSV
>Mariner-5_DEl_tp#DNA/TcMar-Tc1 264-950  [Drosophila elegans]
MRLRFAEWAQERLVEDDHFYRKIVFSDEAHFHLGGYVNKQNCRIWGSENPHVVLEKPMHPQRVTVWCGMWSGGIIGPFFF
ENEEGAAVTVNGVRYRGMLEDFFFPRMEEEDIDDIWFQQDGATCHTANVTIDFLRGTFENRIISRNGDVNWPPRSCDLTP
LDYFLWGAVKDKCYANHPETIDDLKHEIEVAIRAIEGHTIENVFKNWVDRMGYCKASRGSHMNEVVFHT
>Mariner-5_AN_tp#DNA/TcMar-Tc1 136-1209  [Emericella nidulans]
MGRRGKELTPDIRARLCELKAIGWTFAMIHQRYPHIPYSTIRNTIKRENDRKDQKSSPQSGRPKKISLEEQRHLLALIEQ
DHHIKMRKLSEAVQSSPSVRTVQRLFHTLHIQKWKQCERPEITPENAEKQLRWAETYAGYTAEDFNRVIWSDECLVERGA
GIRRIYTFRSPRQQIIKRDVHAIRCGKGVKQMFWAAFGFNRRTGLLPLDGDPDAARGGVTAWVIRGVYKSFLPDILGPGD
IFMHDGASVHRAYIVQQLLEDMGVEVMVWPPYSPDLNPIKNLWALMKAKIYELHPELERAPDTEETLQLLIKAAIEAWHA
IDERVLQNLCHTMPHRVQAILRADGWYTSY
>Mariner-5_MLP#DNA/TcMar-Tc1 181-1197  [Melampsora larici-populina]
MKTRNLRPDELGRIAGLHEGGMSGSKIAKHLGRPRSTISTVIQRYKRTHNLIPVKSSGRPPKLSVQDIQRVEEEIKSDRR
ASAAHITSKLDLDASPSLIRSVFNKLGYHSRVPASKPFLKDDHIQRRLEFARLHQHWTVADWKNIIWSDESSFEVGKVSE
KIRVWRKPAEKYRNECLVPTFKSGRTSVMIWGAFVNTTKLDLVFMEPGKRTGPDFVGQVYEGSVQPFFTSGMSSDDMTLM
EDGAPVHGCKVAKEWREHHGISKIKWPANSPDLNPIENVWRLMKKSISQNYHIKTVAEMCIALQNEWEFIGDEILSSLVE
SMPDRIQAVLQADGGHTRW
>Mariner-8_DK_tp#DNA/TcMar-Tc1 233-1279  [Drosophila kikkawai]
MEKNEVRAVIKYLCLKKLTTQDIHCDLEATLGESAPPYSTVARWASQFRVGRTSTEDEHRCGRPSTSVTQENVAKVEKIV
LSDRRVTIRYLIQETGISYGSIQSILKQSLNMRKVSARWVPRMLTDSQKQNRLDISKILLDKFQEDSENFLSRFVTMDET
WVHHFDPETKQQSSQWKRPSSPTPKKFRAVASAGKVMASIFWDSEGILLIDYLERGTTITGQYYAALISKLRNAIKEKRR
GKLRRGVLFHHDNAPAHRSAVAMAAIQQAGFELVDHPPYSPDLAPSDFYLFPKLKEYLRGNRYEDDNEVMDAVESFLQDQ
DKTFFLKGIEALEKRWTRCVERLGDYVEK
>Mariner-8_DAn_tp#DNA/TcMar-Tc1 344-1336 Mariner-9_DF_tp near-identical. [Drosophila ananassae]
MGRGKHCTPERRELIKNLISSGKTYKEVQKIIGCGASMIRNAIKFSPKTETRGRPQVLADKLATRVARYSKKHPFASCKE
IKDELNLDASIPTISRLLKKQNLKAHSPRKIPFHTKKHIAARMKFAKSHVNWSVEKWRNILWSDESKIVLYGGKGSRQYV
RRPPNTEFNAKYCIKTIKHGGHNIMIWACFSYYGVGPIYWIKNIMDGPGYVQIMQETMLPYASEEMPLLWVFQQDNDPKH
TSKVAKKWFAENKIAVLEWPAQSPDLNPIENLWTDVKKAVAQRHPTNVSELWEIVKASWTSISPERCQKLVDSMPRRCAA
VIANKGGATKY
>Mariner-4_DRh_tp#DNA/TcMar-Tc1 374-1399 via tfasty with Tc1_DM_tp, 2 stopcodons.  [Drosophila rhopaloa]
MEQKGKEISVEEWKIILKGFLDGKSYREIGALVARTHSSIQRVINNYNSAGSILPKARSGRPPLLINREQRNIIKSIQLN
PRTTAHQAKLKVEDRFSKRVSEDTVRRTIKKADYHSRVARKKPLISEVNRQKRLTFTNEYISKHQDFWNKIIFPDETKFC
IFGIKGKVLVWRKSGEASNxENLVGTVKQGGSGIMVWGCMAASGVGKLAFIELIMDQKIYIDILKNNLKESAEKLGLESE
CWFQQDNDPKHTAQNTKLWLLYNVINQLRTPPQSPDLSPNEHFWDLLERKIRRHTITSKKMLKNVILEExGKITANENKK
KVDSIPRRLTEVLQRKGYPTSY
>Mariner5_AO_tp#DNA/TcMar-Tc1 117-1163  [Aspergillus oryzae]
MAPRKELDPQIRLRICELHSIGWGPTKIYRQHPEIPLSTIKTTIRRESIRVNNTTRARSGRPRKLTEQQRDHIYDLVQSE
PHIRHIDLLTEVDHVVKRRSIQYLLSEMGCRKWKQLNRPEIKPIHAAKRLAWARRYEHYTAEDWARVKWSDEYMVERGIG
VRPTWTFLRPRDQLKNHDIHAKPCGKGIKQMFWAAFGEDIRTGLVPLDSDPESAQGGVTAAIILALYRAFLPDLLQEGDI
FMHDGASIHRTYIVREGLEEMGIEVMEWPPYSPDLNPIENLWALMKEEIYKLYPELLTAPNTASIRELLTKAAQEAWHSI
ENRVLVRLSTTMPHRVQAVIEADGWYTKY
>ITmD37D_Ele3_tp#DNA/TcMar-Tc1 163-1185  [Aedes aegypti]
MEAKRELVINLFLKQYRPCAILRKLKPFGINERFIFRTIKRYKCTGSVKTAPRSGRKRTVRSPEAIKRVRERIRRNPGKS
GRKMAKELGMSQSTLGNVLKHDLGLKAYKKQRVHGLTEKQKIARVERCRKLLKRHGDCEILFSDEKMFLLQDHHNQQNDR
VYAQYLSDIPRDKLAVQRFQNVSRVMVWGCFSKNMKVPLLFIEPGVKINSKYYIDNVLKNHLLPHVKKHYKNVPYCFQQD
SAPSHQAKVTQAWCETNFPDFISSKEWPASSPDLNPLDFFAWGHMLSQLGNTKGLNLETFKQRLVKIWDEMPQDIVRASC
EAFQQRMRLVIKAKGERFELD
>Mariner-1_DAn_tp#DNA/TcMar-Tc1 340-1332  [Drosophila ananassae]
MGRGKHCTDEKRDLIKKLIKDGKSFREVGRLVGCSNKMIRNAITYKKNQETRGRKPSMTPLEVKRLVRHSKREPFKPATD
LKKDLNIAATDQTVRTYLRQHNLKACSPRKVPLLNARHIANRIKFAKEHKNWTPQQWRNILWSDESKVVMYGGKGSRSYV
RRPKNSEYKPQYTTKTIKHGGCXVMVWACFSYNGVGPIHWIKSIMDQHVYVDILQSVMLPFAEDDMPLIWVFQQDNDPKH
TSKKAKEWFLNNAVQVLEWPAQSPDLNPIENLWSDVKKAVADSKPTTIDCLWGVIKESWTNIPKKRCQDLVDSMPRRCAA
VLANKGCATKY
>Mariner-3_DBp_tp#DNA/TcMar-Tc1 365-1357 via tfasty with Mariner-1_DBp_tp, 2 stopcodons. [Drosophila bipectinata]
MPRATELSKEEQIQIRTMADCGVKVGAIGKTINGHRNTVGNFLKSPQKYAENNRKGAIPKIDNRTKRHIRALASAKNLSC
AKIKAQLKLPICRQRVxQICRKDLHLTYEAKVPKPKLLRRHKMARLAYxEKFKFWTTEFQNVIFSDEKKFNLDGQDGNQK
YWRDPRHPRQTCNRRNHGGGSLMVWAAFSYFEKSPICFVPCRMNAETYTNLLESELVPFSEEFHPGNFFFQQDNAPIHVA
RCTKTFLESKSIDLMQWPALSPDLNPIEDLWGILSVKVFGGGTKFKTLKELKAAIVNEWASIDIAVLQNLANSMPKRLKL
LDQQKGDTILY
>Mariner-1_TCa_tp#DNA/TcMar-Tc1 417-1479 via tfasty with MARINCE1_tp, 1 frameshift. [Tribolium castaneum]
MFSASEYCDMYLVYGASEGNALDAVRQYGIRYPQRRQPSINIFRRLDQRLRENRTPIPEYKGIHPGRPRVRRTVETEEAI
IDAVAENPSISCRQVGRLLNIPFKTVNRVTRDEMLHPYHYTKVQSLLPADYERRMAFAQWILDKDVDFLRKILWTDESLF
TNNGIFNRHNHHYYAINNPFLNFETGRQHRFSLNVWAGIVGNQLIGPHILPDRLGGDKFLNFLQFDLENHLLDDVPLAVR
REMWLQMDGAGPHYAVPVRRWLNENYENRWLGRGSATPWPARSPDLNPVDFFMGPIKDIVFTPPVPENLATLQERVFVAF
NSVTPDMLERTTNSVQRRAEACLLANGRTFQHLL
>Mariner-20_DF_tp#DNA/TcMar-Tc1 286-1044 Fragment [Drosophila ficusphila]
RIRKKIVRLDKFICFQATAKKRRKIKVAASKPLLTKQNREARYNWALEHRSWTAEKWATVLFSDESSFQLFSNRPCRVYR
KANEKFSPQCIVPRVQKGGGSVMVWGCMSAKGPGELAFVDGTMNTEKYLQHMDDYMFPSKKKLFGRRKEWKYQQDNAPCH
VSKKAIAWFLNRRVPLLKWPARSPDMSPIEELWDLLDRRIRKHIIRSLDELKRRLTEEWMGLRADRKLFENLVNSMPERV
EALIKAKGGATRY
>TZF28C#DNA/TcMar-Tc1 322-1336 via tfasty with Tc1-12_Xt_tp, 1 frameshift and 1 stopcodon. (Coding region of the 75% similar (DNA level) TZF28 itself has 13 frameshifts and 4 stopcodons). [Danio rerio]
MSEQMRIMRSKELPEELRDRIVARHRSGQGYKKISAALKVPKSTVASIILKWKTFGMTRTLPRAGRPAKLSYRGRRALVR
EVKKNPKITVAELQRCSREMGESCRKSTITAALHQSGLYGRVARRKPLLHEFHKKHLKDSKMVRNKILWSDETKIELFGL
NSKRYVWRKPGTAHHLSNTVPTVKHGGGSIMLWGCFSAAGTGRLVAIEGKMNAAKYRDILDENLLQSAQDLRLGxRFTFQ
QDNDPKHTAKITKEWLHNNSVTVLEWPSQSPDLNPIEHLWRDLKMAVHQRLPSNLTELERICKEEWQRIPKSRCEKLVAS
FPKRLVAVLDQKGASTKY
>Tc1DR1_tp#DNA/TcMar-Tc1 16-1003 wised with Tc1_TF [Danio]
KQLSEDLKKQIVALHKDGLGYEKIDNTLKLCCSTVAKTFHRFKRTGSSQNRPRHGQPKKLSGRSQHHIQRLSLKNKWMSA
SSIAAKIKNMGGQPVSSQTVSLTLHXISMHGCGPRRKPLXRRCKKARKQFTADMQTKDQDYLNHALWSKTKINPFGSDSV
KCVWQQPGGGYKDKCVLPTIKHGVGSVMFWSCMSAAGIGELHFIEGSMNSNMYFDILKQXLRKLDCRAVFQYDNDLQYTS
RMTTGLLKRLRVKVMDWPSMSPYINPIXHLWAILKRKVEKHKVSNVHDLHDVVMEXWKRISVATCDALVNSMPKRIKTML
ENDDGHTKY
>Kanga1_tp#DNA/TcMar-Tc2 239-1510 [Theria mammalia]
MSSKRLHYDSALKRKVIVYAERHGNRAAGRKFDISEANIRRWRNDRNSIFSCKATTKCFTGPKKGRYPQVDEAVLRFVTE
IRAKGLPITRQAMQLKAGEIAKSLGIDERNFKATRGWCDRFMRRAGLSLRRRTSICQKLPADFEQKLLNFQRHVIQLRKK
RNYEFSQIGNADKTPVFFDMPQNYTVNAKGAKEIKIMSTGYEKQHVTVMLCITADGQKLPPYLILNRKIXSKNEIFPKDV
IVRAXKMEIWMTAELMEDWLKVVWNRRPGALRNPPSMLVLDAFRGHVSEQLKNKLAEKXSDLVVIPGGMTGQLQPLDISV
NKPFKDHLRKEYESWLLSENLPLTPSGKIKKAPASKLAEWVSAAWKKIPETIVEHSFKKCCITNALDGTEDNIVWKNTDI
DDSESKSDSEESDSECEEVLGIP
>Mariner-6B_AMi_1p#DNA/TcMar-Tc2 390-1646[Crocodylidae]
MPKRKLYTFDFKLSIIDHAKKHGNCAAGREFSVDEKSVREWRKEEGILKTLNPRKRARRGMHCKWPTLEANLKEWVVAQR
ESNKVVSTIAIRQKARVIANEMKITDFGGGCNWAHKFMCRNNLAVRSRTTVGQKLPGDWEEKLTEFHDFVRKECSVHNLC
PADIINMDEVPISFDVPASRTVDQRGKKMIAISTTGHERTNFTVVLACTVSGAKLKPMVIFKRVTMPREKIPNGVAVICN
KKGWMNEDVMKEWTERCFRTRQGGFFVPKSLLIFDAMAAHKHSSVQKQINKAGAHIAVIPGGLTCKLQPLDISVNHSFKC
FMRKEWEKWMSQGVRSFTPSGKQRRATYTEVCNWIIAAWRAVKPSSIINGFFKAGILDGASGEESDYTDSEDYADELDGA
AFVDAYFGESSYNTDFEGF
>Mariner-1_XT#DNA/TcMar-Tc2 81-1433 [Xenopus (Silurana) tropicalis]
MDTGTTNPGPKQKRRSYEAGFKLKVVSRAEESNNSIASREFCVDEKQVREWRKMKAGLEKIPKTKKARRGLMTSYGALET
ELHEWVMACRQNGYCVTRMGIRLRALQMAKDDKYKAPGIEKFAASAGWCTRFMNRFDLCLRQRTKISQKLPRDLEEKVMS
FQSFIIKQRRIHNYDLGDIGNMDETPMTFDLPSNRTVASLGDKTIFLRTTGNEKNHFTVVLSCLANGTKLRPVILFKRKT
LPKKVKFPPRITVRPHVKGWMDEDGTKKWLEEIWNGRPGAALKKKPSLLVWDMFRAHTSDDIKELAKSSQVTLAVIPGGL
TSVLQPLDVSLNKPFKDRVRKKWHEWMSSGQARLTKVGNLMKPDIELIAKWVRDAWEDIPEDMVQRAFKKCGISNAMDGS
EDSALYENDSSDGDDCELSDDNVYADNLTPAEAEALFGHTDDEEESSFEGF
>Tc1_FR3_tp#DNA/TcMar-Tc1 136-1166 wised with Tc1_FR1 very similar (>90% identical) TC1DR3 excluded from protein db [Takifugu]
MGRSQELSDFQRGTVIGCHLCNKSSREISLLLNIPKSTVGFIIRKWKSLGTTATQPRxGxPRXTDRGGQRMLKRIVQRGR
RLSAQSVATELQTSCDLQISPRTVRRELHGMGFHGRAAASKPYITKSNAKRRMQWCKARRHWTLEQWRRXLWSDESRFSI
WRSDGRVWVWRLPGERYISDCIVPSVKFGGGGIMVWGCFSGVGLGPLVPVKGTLNAPGYQNILDNSMLPTLWEQFGAGPF
LFQHDCAPVHKARSIKTWMTESGVDELDWPAQSPDLNPIEHLWDELERRLRARPSPPTSVCDLTNALLEEWSKIPINTLR
NLVDSLPRRVEAVIAAKGGPTSY
>PARISa_DPs_tp#DNA/TcMar-Tc1 392-1435  [Drosophila pseudoobscura]
MPGKRTEDNLIQLVYFNYGKGKTAKELAKMFNIKLRTVYNIIKRAEKENRLELQTSTGRPKKLSRRDCSKILKTVENKPQ
TSLRELVNDIKINLNKTVCPETVRKVLNVHRYSSHVARKKPLLSTANIEKRLNFAIFNVDKPLEYWDDVIFCDETKIMLY
YNDGPGKVWRKPNTALQSKNIVPTVKFGKLSVMVWGCISSKGVGELRIFNDIMTKEFYLDILKNELTKSAQNFGFVDPQN
TSKLKYKLYQDNDPKHKSFLCRTWLLYNCNKVIDTPPQSPDLNPIENLWALLKKRVAKRRPTSKSNLIQCINEEWLKIPE
YYDINVLISSMSRRLRGVLDANGGHTKY
>PARISa_DMo_tp#DNA/TcMar-Tc1 406-1455  [Drosophila mojavensis]
MPGKRTDDNLIVTMIVYFNYMKGQTIKELAEMFNIKLRTVYNIINRAEKENRLEPNSSKGRPAKLSRRDCSQILKTVENK
PHTSLRELVTDIRLNLQKTVCRETVRKVLNLHKYSSHVARKKPLLSAVNIEKRLTFARLHIDCPPNYWNNVIFCDETKIM
LFYNDGPGKVWRKPKTALHAKNIVPTVKFGKLSVMMWGCISSKGVGELRIFDDIMTKEFYLDILKNELTKSAHNFGFINP
ENPSKLKYKLYQDNDPKHKSLLCRTWLLYNCSKVIDTPPQSPDINPIENLWALLKRKVAKRSPKTKNELIRCIHEEWRKI
PEYYDINELILSMSRRLRGVMEANGGHTKY
>Tc1-4_DR_tp#DNA/TcMar-Tc1 275-1372 [Danio]
CQQVIVIMIWYKSSIQERSSPLGAKMGRGSPVCQQICEKIIEMFKNNVPQRKIGRHLDISPSTVHNIIKRFKESGGISVH
KGQGCKPKLNNRDLRSLRRHCIKNRHSSISDITTWAQDYFGKPLSSTTIHSYIHKCQLKLYCAKRKPYVNSVQKRCRLLW
ARRHLGWTITQWKCVLWSDESVFQVFFGRNGRRVLRTKEEKDHPDCYQQQVQKPGSVMVWGCVSALGKGNLHFCDGTINA
EKYIEILEHNMLPSRRYIFQGRPCIFQQDNAKPHSAHITKSWLRRKRIQVLDWPVCSPNLSPIEKVWCILCGKMLQRRPC
TVAHLKTCLQEEWDKITPETLHHLVSSVPKRLLSVVKRNGNITKW
>Tc1-16_Xt_tp#DNA/TcMar-Tc1 383-1417 [Xenopus (silurana) tropicalis]
MDNRKRRRELSEDLRTKIVEKYQQSQGYKSISRDLDLPLSTVRNIIKKFATHGTVANLPGRGRKRKIDERLQRRIVRMVD
KQPQTSSKEIQAVLQAQGASVSARTIRRHLNEMKRYGRRPRRTPLLTQRHKKARLQFAKMYLSKPQSFWENVLWTDETKI
ELFGKAHHSTVYRKRNEAYKEKNTVPTVKYGGGSMMFWGCFAASGTGCLECVQGIMKSEDYQRILGRTVEPSVRKLGLRP
RSWVFQQDNDPKHTSKSTQKWMATKRWRVLKWPAMSPDLNPIEHLWRDLKIAVGKRRPSNKRDLEQFAKEEWSKIPGERC
KKLIDGYRKRLISVIFSKGCATKY
>Tc1-10_Xt_tp#DNA/TcMar-Tc1 370-1389 [Xenopus (silurana) tropicalis]
MKSKEHTRQVRDKVIEKFKAGLGYKKISKALNIPRSTVQAIIQKWKEYGTTVNLPRQGRPPKLTGRTRRALIRNAAKRPM
VTLDELQRSTAQVGESVHRTTISRALHKVGLYGRVARRKPLLTENHKKSRLQFATSHVGDTANMWKKVLWSDETKMELFG
QNAKRYVWRKTNTAHHSEHTIPTVKYGGGSIMLWGCFSSAGTGKLVRVDGKMDGAKYRAILEENLLESAKDLRLGRRFTF
QQDNDPKHKARATMEWFKTKHIHVLEWPSQSPDLNPIENLWQDLKTAVHKRCPSNLTELELFCKEEWARISVSRCAKLVE
TYPKRLAAVIAAKGGSTKY
>CR1-64_HM_gag#LINE/CR1 278-985   [Hydra magnipapillata]
MVNAKEFKDALDALESKLRIEYESKISNAVADLKKTIQSLVLTVADLTKKNEDLNNKVVNVIVPAPNEAWNIVTGRKLNK
TQSQIDIINTVSNENKEIERREKNVIIFGLEESNKTDGADIKKDDENKVLDLLDQVSIDKLHMVRIFRLKSKNGIAPVIV
ELRNKDTRNDFIKKSYRKFNGIYVNPDLTDAQRNLDKQLRDKCRELNKPLNLKVDWDQVKSYHVIRNKQVVLINK
>CR1-55_HM_pol#LINE/CR1 749-3706   [Hydra magnipapillata]
QFISSQQDQLLFSKNLLFKNSNKFIEKNNKRQLINLKNQELFNHPKNNYCGKWALTNIRSLGNKIADFQHFVHLHSLDIC
CVIETWLNKNLPDSLLCPRFYTVLRCDRSSKGGGIAIFFRSFIQFTKVDIPPEFHELEIVCADLNLNGQSFRVIGYYRSG
GFGKVAIDYMQSSVKCFSILCSTKKNVVILGDFNLPDIDWHYYHGPDSVIHNSFLHFINRYSLTQHVDQPTRENSILDLI
LSSSSSFISNLCIEPPIGTSDHNVIIFTPNLSCLYNKTEVPVQQFFCWKNADYQVINKYLKSVDWSIIFQTCFNIEACWH
TFSTILNNIITQHXPKVRVCEEHKLSHKIHYPYYVKRLINNKAMAWKRSKVTGKSNDKAAYKSIAAQCSDSIRKYHAAKE
LKMIRKDNLGSFFNFVNGKLKTCSKLNDIRRSDNTLCHDKEEISCIFNNFFASVFTVDNGLSPKFTDRVNVHSTCLSSIN
FSPSTVEKALRALKPTTSTGLDGIPNVFLKNCANSLSIPLSHLFDTSFKDGAIPLDWKVASVIPIHKKGPTVDPGNYRPI
SLTSTCCRVMERIINNKLINYLLLNNLITKEQHGFIRKRSTCTNILESLHDWTLNLQRRIPTDIIYFDFKKAFDSVSHPK
LLMKLPAYGIVGNLLNWLTNFLHMRSQVVNLNNVTSHAISVTSGVPQGSVLGPTLFLLFINDVSHINKQLDVKLKLFADD
IKLYSVYDVRGLQSDLHTAVNXLYEWSCTWQLQIATEKSFVCTIANQSQNIAQRVYTINNHELAHVNCIRDLGVTIDRNL
KFNQHINLIVHKAMSRAFLILKSFYSRDRLLMVKAYCTYVRPMLEYCSSVWSPYTICLINKVEKVQRFFTKRIAGLWSVS
YDKRLAILKLNTLEYRRVFKDLVLCYKILNGKLDTDLSNILILNSYLNNRGHNFKLYKHHCSLNSTKCFFSNRIVNVWNS
LSEDVVSASSVLMFKKRLAVLLCSS
>CR1-64_HM_pol#LINE/CR1 986-4033   [Hydra magnipapillata]
QLLFKSSQYNTHNFKHSLHTPCQYXYNQLNNPDADTGGSNHLNSSANTLLVKKMNQDLQKGLKTENIDYLTCWYTNATSL
NNKFDEFIDDISRSKAQVIFACETWWSAMSTTNIPGYNLFRKDRQFSRGGGVCIYIQENIKSYEINEKYLINENIEQVWC
LIEIGKEQILCGCMYRTGLSNSEKCIDIIKSLKQAYVLKQNNKCSGILICGDFNYANIKWNDESFSEIINDSDTTASMFI
ESLHDCYLHQNVISPSFQVKFGIDTNILDLILTDNSNRVYFLEHFPPLGGIDHGHHILKFRFGYENKPNLLISLQTRKKK
FLWKNGNYKALDLYFNNINWINEFEGLSVNECYEKWLRKYEIGCEKYIPTLNLDKNSFQLKNNSLWMTSELKSMCKEKKK
CWFRNRNSGFKSLLEVNKYKKLNKDIKKLVKKSIRNFEKNLALNSKSNPKSVYAYINNKTRFKDSIKAIKLHNGIITTDN
QEIVNTLNEFFASVFIQDDSPEEVLDDNLLTKCSDPDFSISIIQKHLSNLNMYKSVGPDNVHPKVLKECSESLSSSLAII
FVKSFITGSIPKLWSCANVVPLFKKGNKLDPTNYRPVSLTSIVGKVMERIIKDHMMVFLIENNLISKEQHGFVNNKSCIT
NLLETLDLITQAYEEDISVDVLFLDFKKAFDSVSHTKLLKKLFRLGFVSSLLNWCKSFLSDRTQRVVIGEYISSWKMVTS
GVPQGSVLGPLLFVIFINDLCRGIIKDTKLYADDTKVISINHCYDDNKILQEDINRLVKWSEDWLITFNESKCKVMYIGK
KNPRYEYKLNNSVLTETMIENDLGIFISNNLEWKYHXNSAIGKANRKLGMIKNSFEYLDELSLKLLYKSLVRPHLEYGAT
VWSPFWKKDIDNLEIVQHRATRIESLRGKSYEERLKILELPTLFDRRRRGDLIQMYKISKGKDIVNFHHPPLNFELERSS
RSNNCRIRRQFTKSRIRHHFFTNRVINDWNSLPQWILDKDNLNIFKNSIDNYFGF
>CR1-83_HM_gag#LINE/CR1 58-753   [Hydra magnipapillata]
MVVSKDTTQAINTAIEVLRKELIERIIKVEKENERLNTENESLKKQLAEQCNQNNNKPLFSSLIKKTSEGAPPISDSETR
LLNAISAEQKEKIKKEKNVLVFGLKESKRKSKDEIKEDDDESVGEVFDAIGLDKSCIVKHFRLNSRDKNRPGPLVIELVD
PSYQKQVLSVARDLNKVEAYKNKVFINPDLTYRQRASLKLLLGERNSLNKIEEGQKFDISICYQKRYAAEN
>CR1-72_HM_gag#LINE/CR1 107-769   [Hydra magnipapillata]
MVNLQLGDFNTYKCEQEAIIVDLKKLIETLRTDNANLTKRVLDLENSKSKSSSAVTGDWASKVKKTPDQMQIINTIANET
KERDKRENNLVIFGLEESTLSDKVKAIEEDKQNIETIMKKLKVNVKIKNVIKLKSKNGYKAPYIVVLNDKLERNSVLKNA
KELKKDKTYESVFINPDLTESERYKSKLLREECKKLNNDNINKANFYFGIRNDKVVKIKK
>CR1-55_HM_gag#LINE/CR1 92-748   [Hydra magnipapillata]
MVRKEDFEALVSRVLKLEAELLTKDKEITQLKILVNDLKNQPSNVLNSSACAWSDVVKGKKSNKAAQLDLVNVVVKESQD
RDLRQKNLIVFGFNTSKNKNDDVAREEDILGIQNIFNQINAKATIQRVFKLSIKSDKPPPVIVVLTNKEERNAVLKTAKT
LRNLPETNNIFINADLTVAERLKMKALREERAKLNETNKDLQYYYGIRNERVVKLIKR
>CR1-36_HM_gag#LINE/CR1 757-1677   [Hydra magnipapillata]
MSANELYETSSISPSLNPIDLLENWPGPGKGKAAYLPKRCDAMIRSLATTVKLLLEKVAALEKTNTNLQIQLTNCQPPAV
YPSVSQPILKSFASQLTKPGSATNNAILNAVNINAKLQQSKAKRAIITGIPNAASTDASVVDQSVKDILQYVHYSASFKV
VGRIPAAISNKNNKSPPNTSISTSSTVTAPTQPAPPSLIIEFPTNETRNGLLAIAKNLATNESYKSVFIRPDRTPSEQDL
FNKLNNEKFKLNNGLKANGKLDQPFRFVIRSDRVKCIDVSKKVNINGLEKHPFINWKGALAAAQTNQ
>CR1-25_SP_pol#LINE/CR1 2-2173 [Strongylocentrotus purpuratus]
SGETRYIYDKADYDAMYDKIMEIDWNNEFWEMSMEKSWSFFKTTLLDIFNRYTPKKTLNVSQRKKHWMNRETLEVVREKH
RHFRKWQEMKSEKNREKYSSAEIEQQRRCYSRSSNQARWQCRKAVSSYEKYIASGVKKNARAFWSYVNSKITTRESVCNL
TKPDGSKTETDQEKAEVLQDFFSSVFTQEDLQDIPLPLDVEFDTPLDDIQITSGDVFELLRRLKPNKSPGPDKIHPRLLK
ELADVLALPISLLFQKSLESKQLPQDWKSANVTPIFKKGNKSDSKNYRPVSLTSIICKMMENLVRKQLLDHLMTNDLISV
HQHGFVVGRSCITNLLEVLDQWTQILDDGGTVDAIYLDFMKAFDTVPHHRLLLKLESYGVRGNVLAWLESFLSGRQQRVV
VRGKQSKWGKVLSGVPQGSVLGPCLFLLFVNDLPKVVNSNISMFADDTKLYVRADTADLRKQLQEDLSRMEEWAEKWQLC
FHPDKCTVLRLGKLPAEASTDYCMKKGTDSVTLSVTKVEKDLGVLVDSQLSFKDHISQTVLKANRVLGVIRRTFMYLNTD
TMPFLFKGLVRPILEYGQAAWSPYRLGEQRMLESVQRRATKIIPGLRNLTYQERLTKLKLPTLVHRRKRGDMIDVYKYVN
GLYTVQEMPFKMSTEDRTRGHSRKLEKKYSRLDIRKYFFSNRVVELWNGLPENVVAAGSVNSFKNRLDSHWSKSVPVSLL
YEPV
>CR1-39_BF_pol#LINE/CR1 1-1326 fragment [Branchiostoma floridae]
ITPIHKKGARTQAGNYRPVSLTSVVGKTMEAIIRDALVEHMSAGNHFTDAQHGFVPGRSCMTQLLVVLEEWTQLLEKGEA
IDAVYLDFRKAFDAVPHQRLLCKLGSYGVTGDLYNWVKDFLASRKQRVVLNGTSSSWTPVRSGIPQGSVLGPVLFVVYIN
DLPEAVSSTVRIFADDSKLYQGVKDNEGRVNLQKDLEALRDWSASWQLPFNVGKCKVLHMGNNNNRQIYTLGDQVLEETT
AEKDLGVTVDNHLKFHTHTALAKNKGNQMLGLIKKSFANLDEQTMPILFKTMVRPHLEYGNVIWGPHYKTGKQELEKVQR
RATKMVPSLRELPYSTRLQRLKLPTLEYRRLRGDMIQVFKMNGIDRIPVQSFFAPVEQSVTRGHSFKLQVPLAKTRARSQ
VFSVRTVSSWNALPESVVSAKSVNQFKSRLDKHWDCQKYVT
>CR1-50_HM_gag#LINE/CR1 114-890   [Hydra magnipapillata]
MEMENNFLNQVNWPSFGQGNHSPASKLLHEWCGKISKYVLELSKKVKDLEDKEQNNLKIIDSLKDDLSKSKQNVNSANIG
NEWVQIVTKGSKSGKKPPEQLVVANATINELHDRERRKRNLIVFGIPESTQTDLLIKRNEDEKKITDVFDFIGKAEVKPV
YTRRLRSKDKTKPGPILVELDEPSIRNPVLLAAKKLRNSMDHKQIYISPDLTEAERQLDLQLRQERNRLNANLDTNSPFR
YGIRGNQLQKFKKNQNST
>CR1-44_HM_pol#LINE/CR1 847-3759   [Hydra magnipapillata]
NSLSSVNKNKSDIIFPFNKKSNYLKFWYTNSTSLVNKITEFETKIMIDSPDIILISETWFKNDLIINISNYNCFYNNRTN
KQGGGVAIFTKYDIIAYEVSVSPLYKEVEQIWCSIVLHKTKILVGCIYRPPNSTDLINNAINELIKTAKKEVMNGKYSNV
IIVGDFNYPNIIWNEDGTIELKQNCQTSRAFINNLQNNYLHQVVNKPTFQMAVDKPANILDLIICDDLDLIINIEYDAPL
GQITKSHYILKWEINILNSYEKKFNNKRFNFRNGKYKEMNLMFYKVNWVEIFDKMNTNQCYEYFLKIYEKACKQYIPRHF
KPTSSIKNPCINKKIKNLVRKKRSLWCRVRATNFKNTNLNNEYKLINKTIKKQIKKSTFDYEINLAKDVKHNPKRFYAYA
QRKNQTHTKLLALKTSDNKIITDKKVIANLLNCSFQSVFVKENQDLPYFSNKTSHLFECDWDQELKEDIIFNYLLELNEN
KSLGCDNISPYVLKHCAEGLSKPLSLIFKKSIHSGELPELWKSANITPLFKKGDKKDPLNYRPISLTSIPSKIIEKIIRK
KLIIYITENNLLTSQQHGFIQNKGCLTNLLETFDIITTEIENGYPVDILFLDFAKAFDKVPHYRLIHKISNYGIKGNILN
WIDSFLKNRKQRVVMGEVVSDWCEVYSGVPQGSVLGPLLFLLYINDLPQCISSIAKLYADDTKIISVIKEHNDLTNMQND
IDLLTEWSNVWLMDFNINKCSVMHIGRKNINYNYTIKHDNQSFLLKTTTKELDLGVIVSSNMKWNHQVQVATSKAQRILC
LIRKSFTYLNTEMVRQLYTSLVRPHLEFAAPVWSPSNKNNINDLEKIQRRATKLAPELKHLSYTERLTKLGLTTLETRRI
RGDLIAFFKLTTGIDKILWYKEPNKASSQRLRGHPMKFEREFAKTTPRHNFFTNRVIPHWNALPEKVVSAMTVNSFKARL
DKHLLTAVKV
>CR1-89_HM_pol#LINE/CR1 609-3674 [Hydra magnipapillata]
MSLNISSFKPLLPNNKFNKKNIVTNTLTKYVKKSQTRDVIISEKRSIDITKNCLSCRYTNATSLNNKFDLFLLDIATFKP
DIYMITETWFNENSVTHVNGYQIIHNNRSNRSSVKAHGGGVAIYVKEGLLVYSPNDSFTKNINIEHTWCILSIKDEQILL
GCIYRPPDASEEINNYICEIIEAAKNKIDHNRYSGLLISGDFNYPNIIWKKNNVQTMKKYDKYSTKFVEYINDNYLHQAV
MSPTYNADLINGNILDLILTETPERINKIHHNPTLGNTRNGHQILSWKYFLKNTTKKEMSNYGKSGFNYKLGNYTVINKA
INENDWESLFGKNSINECYEIFLNIYDKLCNKYIPKKKIYFNKQPQPKPWIDREAKKAIRNKTSLWHKLLSNGFKCDQLK
VQYILINKTIKNLIKTKRINYEKKIADSSKENPKLFYAYVNSNRKIKLGINIITDKNGSLQTNRDDIANILNENFHSVFV
IEDPTNFPNIALKTSKTLELDIDSIITQDIVRIKLSELNVNKALGADGVSSYVLKKCQNSFCKPLELLFKRSLQEEQIPL
IWKMANVTPLHKNGDKNDPANYRPISLTSIPCKILESILGNKIMDYMLANNLLNSNQHGFQKNKSCTTNLLETQDILLDA
IENGWCVDVLYTDFSKAFDKVPHMRLMSKLISYGIVGVILNWIEAYLHNRKQRVILGDCVSKWLTVESGVPQGSVLGPLL
FLIFINDLPDTLKNNIKLYADDSKIINIFKSDEDIRINKLQLDIDNIMKWSSLWLMKFNYEKCKIMHIGFKNPCITYSMF
DAETQQNNILAASKVERDLGVMMQSNLKWTSHIDKAVGKSNQMLALIKRTFKYFDSNMTKKLYTTFVRPHLEFAIQAWCP
YLKQDILKLEKVQRRATKLVPAFKKMPYEKRLQLMKLTTLEERRLRGDLIFQYKIQNGYEKINWINDSTSQVQLKPYNFR
SHNQKLTKAYCKSNYRYNFFSCRVVNAWNGLPPYIIESMTIDQFKNKLDKSDYCKNYLLNTK
>CR1_Ele7_gag#LINE/CR1 377-1207  [Aedes aegypti]
MAKNCGKCSKAINGIDVVICRGYCGGFFHLNECSGVTRAMQSYFVSNKKNLFWLCDNCAELFENSHFRMISNQVDEKSPL
TSLTTAISELRTEIKQLHAKPAASPAVTPRWSTIVQKRGTKRPRIIEPNAHAQDSCRVGCKKAQENGNVVSVPICKPEAE
NLFWLYLSKIRPDVTVEAVRDMTKANLGIEDDPKVIKLVPKDRDIESLSFVSFKIGLDPSLEDRALNPDNWPEGLLFREF
VDYGAPKFRPPLKFNTQSPLTLHQTTISPITPVMDLS
>CR1_Ele4_pol#LINE/CR1 1580-4465  [Aedes aegypti]
MLNSDTEPPRTSSVLSSFLVYYQNVRGLRTKTSDLFVQLSDCDYEVLAFTETWLHPGIANSELSSAYNLYRCDRNASTSN
LQRGGGVMIAVKKHHRCEIVSFGQGFGLEQVAVRIKLPSKSVYVCCIYISPNSDSSIYDQHASCIREVCEKASINDTIVL
LGDYNLPHLIWSYDDEINAYLPTNASSESEITLTESVLSVGLFQVLNVLNQNGRLLDLAFVNDAHSVEVLEPPMPLLKVD
QHHKPILLNFHLPLKNDDTDYYDIRLDFRHYDVSAVCRSITAINWNVTLNENSVDDAVIEFYNLIHDIIREHVPRKNNQA
ARSFNQPWWNDDLRHFRNRLRKIRKRYFKHRSEENWITLQSMEREYSSMRRTAFREYISGLEHKAKSDPSSFWKFVKNQR
KPNSVPREISFQNEHASSATDSANLLAAFFKSVFNENSTQVTHEVLDGVLSYDLRMPPMEVTVDEVYQRLSDLDTTKGPG
PDEIPPLFIKQCAESLALPLSILFNRSLTNRVFPALWKEASITPIHKSGNLTNAENYRGISILSCFSKILECFFHEALYR
AVLPVIPEVQHGFVKNRSTTTNLMTFVTSVRTKMEKNRQVDAVYIDFAKAFDRVPHGLLIAKLQKMGLPEWATSWLRSYL
TARWAFVKIDGIKSSRFRIPSGVPQGSHLGPLLFILFTADLCGLIQSEKLFFADDLKIFRAILSRIDCCIIQRDLDTIVK
WCHANGMEVNADKCKCISFSRSRSPMQQNYEMASQTLERVSSIKDLGVIVDSRMNFNEHIATTTAKAFSLLGFVRRITKS
FRDVYAMKSIYCAVVRSVLEYAVQVWAPYHQVQADRIERVQRSFVRYVLRQLPWNDPIRLPPYDHRCRLIGLDTLASRRV
MAQRIFCFDLLTGNIDCANLLRQMNFHAPVRRLRQNTLFYLPTHRTLYGHNNPLHSCCRYFNEVHDKFDFNITKTTFKSR
IR
>CR1_Ele10_gag#LINE/CR1 107-1513  [Aedes aegypti]
MQCSVESCNISDDRFLWKCEFCFKNYHAACIGVQRHQESFILSFMVPLCGDCQHNLKTGIDTRKVLHQQQQLIDSIRAQT
DANLRVAADLKKLSAMGDLFDQIELQLKESVLSINNSTSSIVSNAVSALSRVAEKNSTIKNDTPNSDLLAIKNHLTGLLD
ISMKSSKQNIEDFVETLTTDLTGELKKICSEVQSLSSLTIEMAAHCNDHNASQPHMTTDAIVEMQSIGNEILSEVKVLID
TVNSPQTNIDAVRFVEVESPPSLLDELADQGIETVNLNPGRNSNGTAGWRLLGTKKVWRSDWTEYDNRQQRRASQQKTKE
KAQKRKKANKHRGHNNSTNRKTNSIFSKTPSKHTRSKNERENMKNNTSQKWFNYNDSNMKRRSNGAVSNGLPSDKDLLAA
AKLTFSKPPVKQRGIKFQRGEILNPYPVDDAFPSCSTSSSNWLFGPALRNSFSQHCSSCSCEKTCFRST
>CR1_Ele17_gag#LINE/CR1 771-1622  [Aedes aegypti]
MSDICEKCANHITGDSINCGGFCSSMVCMRCSGIADDAYASIKANMHLVWMCTACKNLLSKARFSNSLVSINKANESVIE
SMKVEIRNSVLAEIKYEIRSNFKTLIDSVPRTPASIYRTPHPPSIRSKRLRDNDCDDDAATHRPAKSMCCVGTSATVADL
VVSEAAEENRAKFWLYLSGILPEVPESKVVELAESRLKTTNLQVVKLVPRGKDARTLTFVSYKIGIPLELKTIALAPETW
PRGIRFREFESVGNKKQFFWRPEAVTPNPIIQTETPIASSILPR
>CR1_Ele10_pol#LINE/CR1 1492-4566  [Aedes aegypti]
KNVFSINLTQSSDVDPDDPIVADEQLVGNILNNDNVSNDRSELSNNVMQRDVLPSTSSEANATEILVYCQNFNRMKSASK
MNEIYKRILTSSFSVVMGTETSWNEKIKSEEVFGNSFNVFRDDRDLVLTQRMSGGGVLIAISTKFNSELIISSKHKEFEH
VWVKAHIAGETHIFASVYFPPDQACKSSYEIFFQTAEEIVSQLSPEFKVHIYGDFNQRNADFIRDSENESILLPVVGENE
SLQFIFEKAAFLGLNQINHVKNRQNCYLDFLFSNIMDDFCVNESVSPLWKNEAFHTAIEYSIFVHNNHNSDNCDFENFFD
YKNANYDGIKQKLNRIDWQSVLKNQGDLEIAVTDFYSILSEIIQMEVPLLRRRRRNGSKNPVWINKQITNLKNRKQKAHK
IYRQQKSRESLENYLYIVNQLNQAISAALEEYNTKIENDLKSCPRNFFNYAKSKMKSNNFPSKMTLDDRAADNPDGMCNL
FATFFQETFTNFSDKDRDFEYFSSFPDFTSDIGVSQILLQDILTGLKNLDSTKGSGPDGIPPILLKNLANEFTAPLFWLF
NKSLEMSRFPKEWKRSYLIPIYKSGRKSDVRNYRGIAIISSIPKLFESIINKNVFSQIKHRITNTQHGFYKGRSTTTNLL
EFVNYTLNAMDRGNHVEALYTDFSKAFDRLDIPMLIFKLNKMGIAMRLLNWIESYLTDRQQIVRFEGKMSKPVHVTSGVP
QGSHLGPLLFILFVNDISYVLKHLKILIYADDMKLYMEINSNKDSDIYLNEISIFDKWCSKSLLQLNVKKCNLITYSRKR
NTPQITVSLGNQIVQKCDKIRDLGVILDSKLTFTDHYNTIIHKATNMLSFIKRFSYNFRDPYTIKTLYIAYVRSVLEYCS
IVWSPHIKIHGDRIESVQKQFLLYALRKLGWTTFPLPSYEARCMLIDIQTLNERREIAMISFINDIVSQRIDSTNLLSCL
NFYTPARQLRNRNLFASNNHRTNYAKFGPMNRMMSLYNQHCTEIDLTMSRTKLRQYFNSLRYNTT
>CR1_Ele1_pol#LINE/CR1 645-4727  [Aedes aegypti]
RKFLAPRTCGCIRRSAEPSNRRSGSNGISDDPGRTLPLSLKEAPIPLTAVEPLPPATSSRPGPACELEDGVFRSSFPGKY
AYPLRTSPAVPSVVFSVSSPTQTCSAFLNRTPGRKFAASLKEASISLTAVEPLSPSASSRPGPACELEDEVLRTPTSGKY
ALHLRTSYAVSPDAFSATSTTQTCSSYLDRIPGRKFAASLKEASISLTAVEPLPPSASSRPGPACELEDGVFRNRISGKY
DINTSNSLPEVPVVFSVLEELSGLASNSDSPGPSAVPAGNNHRSRIPEYALIDSRMYDLWSSANGDAQMSEAGPSSMFSV
DGALLEFARRSDILDCWNGSRDHFTLPLPDVMDLRRVDEASDSRGPPGAEVMTQPELGNTLRRPKTDSKIRRVLTDSQRT
SHDVMIYYQNAGGMNCDINSYLLATSDDCFDIIVLTETWLDSRTFSSQVFGPSYEVFRCDRSARNSTKSVGGGVLVAVKK
KLKSKPIDNDSWASIEQVWVKIEFSGRNLFLCGIYIPPDRTRDMASIETHNQSIIHISAAANPEDEIVVVGDFNLPGISW
QTCGNGFMHPNLGRSSIHAAASRLLDCYSTATLRQINNVLNENNRCLDLCFVSARDVAPLITSAPVALVKNVAHHRPLII
ALQHNEIRHRESISPVYYDFRNADQQSIAEFLSSVDWLHVLDSDDVDTAALTLSHVIEHAIERHVPKKVHSSSGPPWQTR
ELRHLKTSKRAALRLYSKHRTPSLRDHYARVNNAYKNASRRCYKRYQQQVQLNLKSKPKSFWRYVNKQRKQSGLPSVMKL
DEEVASDWYDICTLFAKKFSSVFCEEELSEEHVANVANNVPLFGETFNMLTVDDNMIIEAAARLKSSLNPGPDGIPSVLL
KAHIVNLLVPIRHVFNLSLNSGRFPAAWKTATMFPVHKKGDRKDVNNYRGISALCCISKLFELIVMKPMLFHCKHYISED
QHGFVSGRSTTTNLLCLTSHIADSFADRAQTDVIYTDLTAAFDKINHAITVAKLERLGVGGLMLRWFSSYLTDRRLTVEL
AGFSSESFTATSGVPQGSHLGPLIFLLYFNDVNTVIKGPRLSYADDLKLFLRVRTIADAVALQHDLDVFVVWCDMNRLTV
NPEKCSIISFSRKLQPILFCYQLKGKVLQRVEDVKDLGVILDAQLTFKHHLSYVIEKASRTLGFIFRIAKDFTDPYCLKS
LYCSLVRATLEYCSAVWHPYYRNGVERIESVQRRFIRYALRRLPWRDPFRLPSYQSRCQLIQLESLQTRRDVNRAMVVAD
LLSGRIDCPALLESINASAHSRTLRNNAMLRLPLRRTNYGQNSAMVGLQRVFNRVAEGFDFHLSRQVIRRNYVEILSRLS
V
>CR1-D_pol#LINE/CR1 1422-4583 [Gallus]
QPNGLHGTGFVGTRWGSPFSKGEKGPWGKASGAHWEGFKLGLKGDGGDSEPSHDKVWDGIAILEGQGASRGLEGPAALRG
AGNTAAHTKSYDDEAVTAGATGEGNGENQGKYLKGIKELSFKEVTRPAAQLKCLYTNARSLGNKQEELEATVLLENHDIV
AVTETWWDDSHDWSVAIDGYKLFRRDRRGRRGGGVAIYIRKGIECEELSLKNSHEQVESLWVTVRDRGSKGSLVIGVYYR
PPDQAEPVDEAFYLQLQEASRSQALVLLGDFNHPDICWKSSTASCRQSRRLLECIEDNFLSQVXDGPTRGDAILDLLLTN
ANELIGDIRIGGCLGCSDHAMVEFTLRRDMRQAKSKIRXLNFRKANFQLFRELVNKTPWETVLMGKGAEQSWQIFKEAFL
RAQELSIPRCSKSGKEGKRPAWLNRDLLVKLKSKKKMHRQWKQGQVPWEEYKEAARLCRDGVRKAKAQLELNLARDAKKN
KKGFYRYLNQKRKVQEGVPPLVSDTGRLVTTDKEKAEVLNNFFASVFSDNCSPHSPQTFGLVGGDWGSNVPPTVSEDQVR
DHLRNLNIHKSMGPDEMHPRVLRELADVVAKPLSMIFEKSWQSGEVPGDWKKGNITPIFKKGKKDDPGNYRPVSLTSVPG
KIMEQILLEAMLRHMEDREVIRENQHGFTKGKSCLTNLVAFYDGVTASMDKGRATDVIYLDFSKAFDTVPHNILLSKLER
YGFDGWTVQWTKNWLQDRVQRVVVNGSMSGWRSVTSGVPQGSVLGPILFNIFISDIDSGVECTLSKFADDTKLWGAVDTP
EGRDAIQRDLDRLEQWAQVNLMRFNKSKCKVLHLGRGNPHYQYKLGDERIERSPAEKDLGVLVDGKLDMSQQCALAAQKA
NRILGCIKRSVASRSREVILPLYSALVRPHLEYCVQMWSPQYRRDMDLLERVQRRATKMIQGMEHLSYEDRLRELGLFSL
EKRRLRGDLIAAFQYLKGSYRKEGDRLFSRVCGDRTRGNGFKLKEGRFRLDIRKKSFTVRVVRHWNRLPRDVVDAPSLET
FKARLDQALGNLI
>CR1-C3_gag#LINE/CR1 377-1493 via tfasty with CR1-H_gag, 1 frameshift and 1 stopcodon.  [Gallus]
MVTTRRGRQAEAETQTGGPQPLWADACTQTDLLRSERAAQTFGCGELWNLEVTRGTEVGEGCHGCRCAQLDDLLEQLTRL
XEEVARLRCIQQSEREIDAWYRAVARADRQPCLGAQPGEXDKQTSHLTEGKHVQGEGDWTFVSARGKRRRLPLAPEVPLA
NRFQALVWEREEGMDSGLXPERGDHIKKVQPRTxVTTSATKKKRRVLVIGDSLLRGTEAPICRPDNLSREVCCLLGARIR
DIKKRISGTIKPXDYYPLLVFQAGSREAATRKLKNIKEDFTSLGKMLKGSGAQVVFSSVLPAGDWDPGRRRRTDQLNDWL
RGWCHAEGYGFYDLGRTFDKPGMLTWDGTQLTRRGKNILGSKLAGLITRALN
>CR1-F_gag#LINE/CR1 234-1304 (Initiation M currently is L in consensus)  [Gallus]
MYRQRACTRKTVATQTEGLPRNVAVQVSGCRECQSLLLPREDGKDATCVRCEQVDELLSLVVELREEVERLRTIRECERE
IDWWSDSLRERCRDSAPQTVVDPLPCCSRAQRADSRGEEEWQQVPARKRRRPPPRPTTVPQVSLRNRFDALKPEGEVSED
KVGRLPPSVTKVRRSAPRLKTASSKKERRVIVVGDSLLRGTEGPICRPDPTRREVCCLPGARVRDISRKLPGLIHPSDYY
PLLIVQAGSDEVADRSLRAIKNDFRGLGRLVDNAGIQVVFAGIPTVAGKDNAVTRKTHRINTWLRGWCKRKNLGFFDHGA
VYSAPGLRSADGYHLSQRGKRILAQELAGLVERSLN
>CR1-X_Tgu_pol#LINE/CR1 1364-4331 via tfasty with CR1-X_pol, 1 frameshift. Frameshift looks real enough.  [Taeniopygia guttata]
DAPXSEGKKSSSTGASGARxQSFKLAWKGERDKTRLASDERWDGVPELEETSANGIPQSASXGVGYNAPHLKCFYTNARS
MRNKQEELEALAQSQRFDITGISETWWDESCDWSALLDGYRLFRRDRQGRRGGGVALYVIEGXECMELTAGNGTVESLWI
RIKGQTNNADVIVGVYYRPPSQDDDADELFFEELRDASKSTALVLMGDFNLPEINWEHHTAGTTRARRFLKXLDDNFMEQ
VLREPTRKDALLDLLLVNRXDLVSEVEIGGRLGHSDHEAIEFKISVDRRKSASKTSALDMRRADFRLLRELVSKVPWENV
FAGAGVHQCWSLFKHHLLRAQEQAIPKCRKSSRRGRRPAWLNRDLLLEIRQKRKVYAQWKQGQVTWEEYRDAARHCREKI
RAAKAQLELKLARTVGDNKKSFFKYINGXRQCRNNIGPLQDEDGHLTNRDTDKAEVFNXFFASVFNTDDGPRGSQCPELE
DHDCENDQLPVDPEIVRDLLLQLDPYKSMGPDGIHPRILKELADVIAKPLSMIFERSWESGEVPADWKLANVVPIFKKGK
KEDPGNYRPVSLTSVPGKVMEKIILGGIEKHLKDNAVIGHSQHGFMRGKSCLSNLISFYDKVTHLADQGKPVDVIFLDFS
KAFDTVSHXILLDKMSSTQLDKHIMRWVSNWLTGRAQRVTVNGVTSDWRPVTSGVPQGSILGPVLFNIFINDLDAGLEGI
LSKFADDTKLGGAVDSLEGREALQRDLDKLEGWAITNRMKFNKXKCRILHLGWGNPGCTDRLGNEXLESSAAERDLGVLV
DGKLNMSQQCLAARRANPVLGGIRHSIASRAREGIVPLCSALGRPHLECWGQFWAPQYKKDIKLLESVQRRATKMVKGLE
GKPYEERLRSLGLFSLEKRRLRGDLIAVYNFLVRGRGGAGTDLFSVVTSDRTRGNGLKLCQGRFRLDIRKRFFTQRVVGH
WNRLPREVVTAPSLTEFKKRLDNALRHMV
>CR1-Je_Tgu_pol#LINE/CR1 1149-4184  [Taeniopygia guttata]
KSFKLDLKGERDKTRLARDKPGGGTPVFEGRCASEVLRSAVSVEAGDGDPCGSKDARVIDVLETTEAPENGHAGIRASPP
EKAAGSIAQLKCIYTNAHSMGNKQEELEAIAQQENYDTVAITETWWDDSHNWSAAMDGYKLFRRDRQGRRGGGVALYVRE
CFDXLELNDGDDRVECLWVRIRGKANKADILVGVCYRPPNQDEEADEIFYKQLGEVSRSLALVLVGDFNLPDVCWKYNTA
ERKQSRRFLECVEDNFLTQLVXEPAREGAPLDLLFVNREGLVGDVMVGGRLGHSDHEMIEFSILGEVRRGVSRTATLDFR
RADFGLFRRLVDRVPWEAVLKGKGVQEGWTFFKKEILKAQEQAVPMCRKTSRRGRRPAWLNRELWLELREKKRVYDLWKK
GQATQEDYKDVVRLCREKIRRAKAQLELNLATAVKDNKKCFYKYISNKRRAKENLHPLLDAGGNIVTKDEEKAEVLNAFF
ASVFNSKTSCSXGTQPPELEDRDGEQNEAPIIQGEMVSDLLRHLDTHKSMGPDGIHPRVLRELAEXLTEPLSIIYQQSWL
TGEVPXDWRLANVTPIYKKGRKEDPGNYRPVSLTSVPGKVMEQIILSAITRHVQDNQGIRPSQHGFMKGRSCLTNLISFY
DKVTRLVDEGKAVDVVYLDFSKAFDTVSHSILLEKLAAHGLDGCTLRWVKNWLDGRAQRVVVNGVTSSWRPVTSGVPQGS
VLGPVLFNIFIDDLDEGIECTLSQFADDTKLGGSVDLLEGRKALQRDLDRLDRWAEANCMRFNKAKCRVLHLGHNNPMQR
YRLGAEWLESCPAEKDLGVLVDSRLNMSQQCAQVAKKANGILACISNSVASRTRAVIVPLYSALVRPHLESCVQFWAPHY
KKDIEVLERVQRRATELXKGLEHKSYEERLRELGXFSLEKRRLRGDLIALYNYLKGGCSQVGVGLFSQVTSDRTRGNGLK
LRQGRFRLDIRKNFFTERVVKHWNRLPREVVESPSLEVFKRRVDVALRDMV
>CR1-5_AG_pol#LINE/CR1 1492-4398 [Anopheles genus]
MQQAPTDRAACITVYYQNVRGLRSKADEFRLSVLETEYDVLVLTETWLDPCIPTALLLGDEYRVYRCDRDATNSSHSRGG
GVLIACNVSLLSYVLPTLPQLLELTCVCIQLCDHRLFIAAAYLPPNHSMNEEKISALIDFVANICTTLGPRDRFMLIGDF
NQSTLSWTSASEENGAAFDFYEPHARSARSVQFVDGLHQSGLYQLNFNTNSSGRILDLIYANWPAASTCSSIRVCEYPLT
TIDEHHPPLDFDLDNVAPVTIATAIDADKRLNYARVDLPKLERLILSFDNSFNCSDYSTIDDATEAFCEFMRSAICECTP
VKIPRRGPPWADRTLNALKKEKRKAYSDQRAERNSTSRLYYNRVHSLYRRYNRSCHRSYLKQTARSLCKYPRRFWSYMDK
KRKSAGLPSIIRYDGDSACSLPEMCKLFALRFKDNFASQTTGPEDVADALSNTPVGALLPMLPVITVDTITSAIKRVKSS
YTPGPDGIPAVILKWCASALAPSLMKIFKESLRCGTFPATWKSSWMTPIYKKGCKNDAVNYRGITSLSVCAKVFEMLIYE
PLLASACNYISVNQHGFVPRRSTTTNLLEFVSKCHKSIDNGLQLDAIYTDIKAAFDSVSHSILLAKLDLLGLPNPMIMWL
RSYLTDRQYSVKLGPYMSSPVHASSGVPQGSNLGPLLFLLFINDATLILPADNHLLYADDAKIFRVIREPEDHARLQTSL
HEFQCWCNRNALSLCTHKCEVITFSRSRCPSLYEYALDGQSLARKQCVKDLGVLLDTKLSFKDQLDHVVATSNRMLGLVI
NMTRELNDIPCTKALYCSLIRSLMEYANIVWWPTAARPLARLESIQRKISRFALRSWNQRLDYRTRCLLLGLPTLSERIR
KARLSFITGLLDGRIDSPSLLAAINLYVPARPLRTRAMLALDDRRTQFGSSDPFLLMCRAFNAVSDAFEPRISPTEFNDR
VSVLNLVP
>CR1-4_TCa_pol#LINE/CR1 1064-3880 [Tribolium castaneum]
PRTKNYFTSKKLNIYHCSMALLYTNIASLSSKFNDLLLEVTEFRPSIIALTETWLNPSISDDAVHIENYSIYRDDRLSQK
GGGVCFYVDKIKISKFFKITQICISVKPYDSLWLKFEGNEQTFVIACIYRPPTGASFNNHENDKNLFNTIQSTINQYPNL
IIMGDFNFPCIDWSAKNTTGQTIIEKQFSELLLENNLSQIVTEPTRFRSQQRPSLLDLVILSDVNLVSSLNVSNPVGTSD
HSKIEIELQIMIYSEPNARIKTTSIVDYTRIDESLLTYDWNGLDSLNAEEQWKHFKSILQTCITTNSRLFTNRLRKDKPW
INQHMLDKIKYKAKLWKKFKRKPTEDNFSAYKRFSNQLKSDLQIARCNYENSILNKPKLFYSHVRKFISSRVSVPLVRNA
SGLLCSDHTETANTLADSFAATYNLNINNNIPSFMPTSTFSGLSYINFTPDLVKSQLCAIKLNTAPGPDQIPPKLLRTCA
ASLSGPLAKMMTKSFLQGTLPYEWLQATITPLYKSGDKLDPANYRPVSLTSTCCKIMEKVIVKELLTYMRKNNLIPEHQH
GFLPGRSVVTNLLSCTNLWTKMLDTNQPVDIIYLDFSKAFDKVPHNLLLAKLESYGVTGNLLDWIRAFLSNRNYCVKVCG
KFSYSKPVLSGVPQGSVLGPILFLLYTADLLFSLDSYSAYADDIKLFANPLVTDLQDQLNLIFQWSEKWQIPLNIAKCCV
LQCGHNNPKYLYHINGTLLSVKTSTKDLGVIVNDKLGWSEQCLASVGRARKMFYLLKHVFPNPSVSFISKVYITYIRPHL
EFAIPVWRPYLLKDIDLLERTQHLVTRWTHCLRQVSYEQRLEILKIPDLRARQNRADAIQIFRLTHGLFPGVTRNFLQIQ
YHDRLRGHSYKLKKEPFKTTVRKNYLTNRAFDIWNGLPDNVVAAVTVSSFKNQYDTLQ
>CR1-6_AG_gag#LINE/CR1 225-1361 [Anopheles genus]
MAAICFACAVSLDAADCIVGCAYCEATFHRGCCRLPSELIDAVLTHIDLHWSCTGCTNILKNPRCRSVKEIGAQVGFQAA
LTSTVAAVGKLIEPIIAEVRSGFTLLQNAPIPQLCNTDPRPVAGRKRRRIIEDSMSPDVNKNVNIRQNNMFAASSPSAYT
NTTVGIPPSSTLPEELMGTDSLSSPLRAAFPQPATDRIWIRLSRLSTAVTVEQVVASVKRRLATDDVLAYCLLRKGVSVD
SVNWLSFKVRVPAALRDAALAPSSWPVGIGVREFVQSRQREHGHSSSPITIKHRSLTRTPVVIDRRSMPRTPTSTVYHAP
AHASTSQAQTLTSPQLGEHTLNDTTHGPNSTLIDGPLLIRRTSNTNLQQTTLDRFFHE
>CR1-7_AG_pol#LINE/CR1 203-3122 Fragment via tfasty with Q_pol, 1 frameshift and 1 stopcodon.  [Anopheles gambiae]
PTLTQTHDGHVIPAGVASLNNTDDLLFLYQNVRGLKTKCHEVFDYVSTTHYDVIILTETWLDINSSQLFPDHYIVFRKDR
NDKNSRKTKGGGVLIAVASHLRVLLCSTSDTVEQLWLKIYSIKKTYVIGAMYVPPDMANNTSVIHTICSTIDDVACKANE
MCLLFGDFNLSNLNWIPDETNPLMLQVDYESSRITDNCRLLLDCMNSNGLYQINKIHNASNNYLDLIFVCDDILQQCSPP
AITPFPIVAIDCYHPPIELCLPNGLAKAEHHTTSHQESGMLDYSRTNFLILNDLLQSSDWSFLDGNPDVNHALDMFNRKF
TEHLSACCPIKRPRQGPPWGNAQLRRLKRNKSSCYRFYQNSGTQQSRLRFIAAHNVYRSYNRQLHSRFLIRIQFSLRRKP
KKFWRYVDTKRKNSSLPAIVSFNGTTSCTKEETCNLFADRFMSSFATEAPGFSLDAALNNVPSDAVDVNVRDINISRDSV
LKALKQVKPSYNPGPDGIPTAVLAKCSEVLAGPLARIFTLSLNQRMFPAAWKSSYMFPVHKKGDKSLVENYRGITTLPAG
AKVFEVVVQNSLLNCCRSLISTRQHGFFPRRSVTTNLVEFVSHCHAAFASGAQMDVIYTDLKAAFDRVNHRLLLAKLARL
GFSTPLVEWFESYLTNRRYRVKVECMTSREFVSCSGVPQGSNLGPLLFSLFFNDVTTVVRESECLLYADDLRLFFPVRCF
GDCLVLQASIDSFSDWCLNNDLQISVDKCLSMSFHRSNCPIVFNYCISGTQLQRHSAVKDLGVTLDRKLDFHVHHNEIID
RANRMLGFIRRQSREFSDPHCLVALYKSLVRSILEYSSVVWCPSSSLWSNKIESVQKKFTRLVLRFTPWRNVAARPSYHA
RCLIFGLESLATRRETAQILFMKKIILGEIDSPDLLARVNFHVPARILRNFRLLRVDQTRRAYSDNEPLTAMAIRFNAHY
DSFDWNSLSxPVF
>CR1-6B_CQ_pol#LINE/CR1 2-1831 Fragment [Culex quinquefasciatus]
NGNIDDYFHASSGECYDFIALTETWLKDHTLSSQIFGPEYEVFRCNRGPDNSRKTEGGGVLIAARRCFKPRRILKDAWKG
VEQVWVSVKLADRVLYLCVVYFPPDRTFDKDLYRIHLDSVASVAERARPADDIIVVGDFNLPKLTWTPSHDGFLYPDPDR
SQFHSCASDLLEGYNMATLQQVNHVENEDGRRLDLCFVSAQDFAPTLTTAPIPLAKVVRRHPALIITVAGTHSCTVRDRQ
DTVRYNFRGADYEGMSLALGRINWESVLDSVDVDAAVDTFSSIMRDHIDQFVPKVRKRVTYHLPWQTPELRNLKTQKRAA
FKVSSRCGTLSLRDYYLSINSRYQRLSRSCMASYQRRKQRELKSNPKKFWKFVDENRKESGLPSSLHLADEEAESTEDIC
KLFAKKFASVFSSEPVTEDEARSAADNVPRCDRSLASIEIDEDAISAAVTKLKHSSSPGPDGIPSTLLKRCSSVLQVPLL
HLFRLSLASGKFPCAWKQAFMFPVHKKGDRRNIENYRGISALCAASKLFELVVIDPIFAHCRQELSSDQHGFIPKRSTAT
NLLCFTEFVIDSFENRSQTDAVYTDLSAAFDKINHNIAIAKLEKLGFRGS
>CR1-4_NV_pol#LINE/CR1 24-3161 [Nematostella vectensis]
MAASHVSLSSVIILLAIRSLLLFAQPPIANRNGKETSFYIWRFCKVGFSNRPDFGNQHHSLFRPRRDFTRPNCYLVGLLL
LCGDVASHPGPRAFSRGKSNCCTTVKCLYMNSRSVAKKRSELQALSIGKDLIFCVESWLNPNYLDCELLPSSADYTIHRR
DRQSRRGGGVFLAVKNSIVSLRRCDLETDAELLACELRPNSRRKILAIIYYRPQDTDLEYLKQLKKTLRLASKAKYDQLI
VIGDFNLSEIDWTTGAAKTGDCLTNYLCKIIKDNYLWQLIDFPTRGRNILDLILTSIPSKFQHIHGFDDIISTDHKLISF
ELDLNISKKTKTKRVVYNFKRADWTGLNESLKNIPWDLCFSQSDNIDSSLANWTDLFLAAVNEHIPKSKPRNVSDYPWID
HELRSLLKKKDAQRKKANKTGSLAAERKYNELRRAAKQMLSKKKKEHAEKLKSVISDNPKRFWTYVKSCTSNKPSPNFFR
DGHAFVTDTKNMANLLNRYFHYIFSPSASEEFVSAQPTNREPVLGLGSIQLTVPEVLDVLRNLDSHKACGTDQIPGILLK
NTAHQIAPSLCRLFNLSLSLGSVPALWKDANVTPVFKKDDPTLAENYRPISLLCILSKVLERCVFKRCFNFISPHIYQLQ
HGFLKGKSTVTQLVEVYHDIVDRLAGGKDIDVIHLDLSKAFDKVPHHLLISKLQQYGVTGSLLKWFVSYLTGRRQRVVLD
GVSSSWLPVTSGVPQGSILGPLLFLVYANDMPNYVQQGSNIALYADDSKLYRSIDTASSSTSLQADLDSLYSWSLEHGME
FSASKCKVVHMSKKRSTKRPPYPYQLCGRTLDPVAQVTDLGVTITNDLSWGPHIEPMCAKANRVLGLVKRVCSDILDPTT
RQLLYCTLVRPHLEYASCIWSPSTGKHKALIENVQRRASKFILNYPADVSYTERLKTLKLLPLEYRRDITDLVLLFKIKN
GDVSISLASLLSPATSRYNTRNYHPNNYRLFSTHNQNYYRNSYFPRTVKLWNSLPSLMKSCTTLSSFRYQLTTHYLEKLA
FYQPP
>CR1-3_AG_gag#LINE/CR1 1057-2313 [Anopheles genus]
MAGICSACANDIVAADRIVKCQGWCNSEFHFSCSGLSEELSATIESCAQLFWACKACVKFHKDPRTAVLRSSTPYTHTSV
DLLSSIADLKAGLRSELSQHTTAIKLELLEVLKAEIRSCLRSTHAATDLPSQRPIHHNSAPKLFNSVVKNIPGTITPTLQ
QYPSLAASLSVSANEPSSFTNMPPXYNPQTPLLRGSGSPLDSDTLDTIPHTDTRMWLFFTRFSPSVTTEQISLMVQVRLA
LDKRDVFVHRLTKLGADTSTLSFISFKVGIPATLRNKALSPKTWPSALTYREFRDYRTNNYNTNTCATTETNSMLDQNVT
LATDTYHNPLSHSGGSAAMPTTTTDTLAQPVTISSPAMTTTDTALFTNEPHLDLNERMLVTTTPTRSPPECLAAPKKRPK
RGNAKRTDESADAGPSDE
>CR1-2_XT#LINE/CR1 378-4318 via tfasty with CR1_1b_Xt_pol, 1 frameshift and 3 stopcodons. [Xenopus (Silurana) tropicalis]
MSCSMIAGVTQCASCRMYVVLEQQFHAAFTCERCRWVFLLESEVQNLRGELAALRAAANMGENRRLTEQPLAGAGVVGGG
EGTVEVNEGDKFVTVKRGSRGRKGRGAGSQLVQTNRFAALGEDAGEGSSELACMERADSQSTLGAGTSNTGGGNSARKGR
QAIVVGDSIIRKVDRVICRKDPTCRTVCCLPGARVRHVVERVDKLLGGAGEDPAVLVHIGTNDKVRGGGEVLKNDFKKLG
AKLRARTSKVIFSEILPVPRATLRRQRELREINAWLRDWCREEGFGFLQNWADFSIGYRLFARDGLPPQxxWGSCFGGKD
GxRVGGDFKLGVGGEGAAGNSVVDRIDEVVGIVRENGGGDLLRDTDNGREAHKLFTRHSHAGTSIKCMFTNARSLTGKMG
ELEVLALERKYDVIGVAETWLNESHDWXVNIGGYTLFRRDRGNRKGGGVCLFVKQELKANIKEEVMGVTEGAESLWVELL
TDSKESTKLIVGVCYRPPNVSEEEEAQLLLQIEKAASLGQVIIMGDFNYPDIDWGNSTARTVNGNKFINLLHDNFMSQVV
EEPTRNHAILDLVISNDPERIANVQVVEPLGNSDHNVISFDVWCRKQIYTGATKTLNFRKANFSSLRAALQGIDWGIMFS
DKNTEQKWLSFKMILNHYCSQFIPLIRKSRSVKNHPMWLNSEVKKLIGRKRKAFKKYKSEGTVAAFNEYKHYNKCCKTAI
RKAKIENEERIAAEAKTNPKKFFKYINSKKMQVEGVAPLSYSNNMVTADTEKADVLNQFFSSVYTVEEPVGQVPPNSCTV
ASAPTTQWLAQDMVLKGLHTINVNKAPGPDGIHPRVLRELGAELQWPLFLIFSDSLSSGMVPRDWKKANVIPIFKKGVRS
QPGNYRPVSLTSVVGKLFEGLLRDHXQNYVVENAIMSSNQHGFMKDRSCQTNLIAFYDEVSKKLDSGDAVDIIYLDFAKA
FDTVPHKRLLSKLRSIGLSEVVCTWIENWLQDRVQRVVVNGTFSTWNKVLSGVPQGSVLGPLLFNLFINDLGEGIMSNVS
VFADDTKLCRPVNSIQDVTSLQQDLDQLAIWAAKWQMRFNVDKCKVMHLGCKNMQAPYTLNGTALGKSIMEKDLGVLVDN
KLGCSKQCQAAAARANKVLSCIKRGIDSREEGVILPLYRALVRPHLEYAVQFWSPVLKRDIIELERVQRRATKLVKGMES
LSYEERLAKLGLFTLEKRRLRGDMITMYKYIRGSYNNLSNVLFTSRSFQRTRGHPLRLEEGRFHLNIRKGFFXVRAVKLW
NSLPESVVLADTLYNFKKGLDGFLASEGIQGYGR
>CR1-3_CQ_pol#LINE/CR1 788-4390 [Culex quinquefasciatus]
MRPGPVYGHGNGAFQAALAGKYIHSTRTNPRLDASLHYSELPTADKVMPSPEFDADIGLGRMYRGIKVDPRFPVTTEPLT
ASVASSSSHLSRPGLVNGTRSGVNYSLLSGKYLHFPSTIPPPDDPLVSSHFHPSHAEHDQPLPLIGPRQQNLLSAVAEVA
DHPGRTYHGNVECPRSPVTVAPSVSSGEYVCSSSPSRPGAVCGQGCGGFRPASSGEYTCIDPNSPALNDCTLQRPAVPNG
VISVYYQNVRGLRTKIDDMYLASQDCGHDVIILTETNLKDDITSLQLFGSAFNVFRCDRSRKNSEKQSFGGVLIAVSKHY
SNAHEVETARGNELEQLCVAASIQGENFLFCAIYVPPEKRSDVNLINEHIATIDELRGTKCADHTTVVCGDYNQSHVQWS
LIGSIARPTSPLTAASTMALVDGMDYLNLCQTNLVHNCFGRILDLVFCSSQRSVAVDVAASALALPVDSHHPPLVCHFPI
FKRPQERRGNSANPALRLLNFRKIDFAAMTTFLLSVDWSLCLTNLGVDEMANTFCSIIRNWMNQHVPTVKPRVSPAWSNS
RLRQMKRLKNACQRALRRRRSVVNKMKFRRSSDAYRKLNSTLYKSYVLRVQTNLRRNPRGFWSFVNAKRKSKDIPDSVFL
DQHESGSPEMSCDLFAQHFKSVFAAGCATDEEAAVAANNVPENLLDLSTFDVSADMVKQALAKLKSSFSPGPDGIPSVVY
RRCADALVAPLSVIFNKSFSQQTFPSTWKQSFIVPVHKSGDKRNVRNYRGVTNLSAASKLFEIIVSKVIQRQAMRYLSDD
QHGFIPKRSVTTNLLEFTSTCIGHLENKAQVDVIYTDLKAAFDRIDHNVLLRKLSRLGLSVQLVNWLRSYLVGRSLRVRL
GTSVSAVFVNNSGVPQGSNLGPLLFILFFNDVLFLLGPGCALVYADDLKLFLPIKATDDCCRLQALLDIFVSWCRRNKLV
VNISKCLVMSFTRSKRMISFDYSIDGVVLQKVDQVRDLGVLMDPKLTFDLQRVSVIAKANRQLGFISKISKDFRDPYCWK
SLYCSLVRPILEYAAIVWLPYQLTWILRIERVQKRFIRRALRSLPWRDPVNLPPYPARCRLLNIQPLQSRRTTQQATFVA
KLLNGEVDSPNLLSLINFRTPQRTLRDSTLLARRFHRTAYGFNEPVSSMIRAFTAVEDLFEFGESSVRFRDKINRTQTFI
H
>CR1-4_DBi_pol#LINE/CR1 1649-4973 via tfasty with CR1-4_DK_pol, 1 frameshift and 2 stopcodons. [Drosophila biarmipes]
QQQRQLELSLSELCYVRLMLTKTQRLELSKFALSDTRDHSIISLLPRSSLTLRNCLNFSSTALCGSSRWQHQQQLCPSVP
NLDRYALLTATLPSLLRTSCSLLKVSSKLRECIDPSLHEKIRIKNTTLLKAICGPTTLGTHEQILPRALDYDALNANPEI
VDRAIVSTAPLKIYFQNISGMRTKAEQVYLATSQCEFDVIVLVETWLNINFYSNEFFDSNLYHVFRKDRDSTKTHCARGG
GVIVAVRCNLRCLSIGLLIEDTLLDQVAVSIIGESESLQIVVSYIPPNGSYKLYKAHLENITDIYNNLQDHQHICVIGDF
NLSSLVWSQDPEHHSSLPSNIHQPHEILFIDDIFSMGLIQVNNIFNNLHKILDLVFLSADINFSLVQCSSCRYKLLQFCA
FSxIFTxIYFNETSLCAIRNEISAINWESVLSHVSLESCYDTFLVVILNIIKNNARERVHNLFKLPWYTKGLKKLKNLRN
KFYKRFLVTQDPGDWNRHLQHKREFEFLNKFLYNQYIASVENGLKSNPNSFWRFINSKKSASSVPSAMFLGNLSSNSNTE
TANLFASYFKANFEPTAAWNDSQTLNAITPLLNLGSLTVLEENIHRAVEDVDESYTPDCDGIPAYFLKHCIEVLCVPLKI
LFDKSLSSGHFADRWKVASVTPILKSGPKNNIANYRPIAKISNIAKLFERIVAHKLSFLVKTYISTSQHGFVAGRSTTTN
LAVFSNYCIHAFNMRYQVDAIYTDFAKAFDKVSHSALLAKLARLGIHSALLNWIKSYLHHRLYRVNINGKFSDSYLATSG
LPQGSAMGPLLFIIFINDVRFCLSSECLLYADDLKIFKSIKLATDSQLVQHDLVSLSSWCSRNSLPLNISKCFYVTYSKS
AYNIVTSYNINGQPLQLRQESLDLGVLFDSKFKFAAHFDYIMPRAYAMFGFVKRNASLFTDPYTRLALYFAFVRSKLEYA
SLIWNPFTTTHGNRIERLQKQFLKFALLPLRFLDPTPSYHQQCRLVHLPSLEHRRSILAICFISDLLDGSIDCPELLSKV
GFHAPPRQLRNFDPFFLELRRTNYSKNEPLYRALYESNALPIDMQLDYFSSKSNLKHRLVNYFVNFST
>CR1-3_DWi_pol#LINE/CR1 1461-4292  [Drosophila willistoni]
LISSLTLAYQNVRGLKTKLSKLYVDSLAFDFHILAFTETWLKPDIADASIFPSKYLIYRHDRTIRNGGGVLIAVDSAFSS
EIVQSSNQEIEFVCVKISFNSFSAFITCSYIPPQSDLAVYTHHLEAIQLISSYLSDKDLLVVLGDFNLPEIAWTLSFDSL
LLLPSLSHCFIDGLLELSLTQINPVRNSRNRSLDLVFVLDSSNCDVSRTDPLVIPEDNFHPTLDITIDLPFGVMSRHNNS
MPPTRCFRKTNFTKLKKLLLTNDWTYLYTCTDMDSAISVFYKTLESFFDVCVPRVTLGWSDRPPWFSRELCNLKNVKSRC
YKRFKKSGKASDFSLYVVARSNFMVLNSHCYKDYLQRCKLRFSRDPKQFYKFVNVKRKTSVHPSYLSFENNKADNDQAIA
DMFADFFKTTYSSSIYQANPPYPHHLQSSNCILDPVFDESSVLSVLSSVKPIYAPGPDGIPGCVLRFCAEALCKPILKLF
TLSVTSSAFPPIWKESYIIPLHKKGKKSEASNYRGISKLSAIPKAFEKIITSQLQHFCSSIISSSQHGFKKRRSTTTNLL
EFTSHSIKGFKTAVQTDVIYTDFSKAFDSVNHTLLLYKLNALGIPSLLLDWILQYLSKRTQKVLFKSSFSKTIQVTSGVP
QGSHLGPLLFTLFINDLPLVVSHSRVLMYADDVKLYLSFKDISSSCLLQSDLNDLQSWCETNLLNLNGSKCKVMSFYRCT
PYLATYYLNDTALERLDIINDLGVLMDHKLTFNPHISATVSKAMNVLGFVKRWSKEFDDPYTTKILYTSLIRPILEYGSC
IWSPQYETHQSKIESVQKQFLLFALRGLNWDRNVNLPSYSSRLLLINLPSLINRRVMLGAIFIHKLLIGEIDSPELLNQL
NLSVPRRPTRNFIPLSLKHCSSNYSLHEPFRVLCSDYNLLYPVIRSEASLSLVKTSILAHLARN
>CR1-7_DT_pol#LINE/CR1 1429-4735 via tfasty with CR1-4_DK_pol, 3 frameshifts and 1 stopcodon. [Drosophila takahashii]
HLALSALSRVVRSSQSSNQQHQLELLLSVFREVRQSLPSEALLSHFINIPALSALFGALRCLQSNQQQGQLEFSSAAWCG
FSRWLHQQQHCPSLLNLDRYAPLTAPLPSLLRTSYSSLKASNNLQECMHDKIRIKTTTLLKVICGPTTLGSQDHILPIAL
DYNALNTNPEVVDHATVSTAPLKVYFQNRAASGAVYLATSQCEFDVIVLVETWLNINFYSNEFFDSKLYHVFRKDRDSTK
THCARGGGVIVAVRCNLRCLAIGLLIEDTLLDQVAVSIIGEYETLQIVASYIPPNASYKLYKAHLENITDIYNNLLDHQH
ICVIGDFNLSSLVWSQDPDHQSSLPSNIHQPHEILFIDDIFSMGLIQVNNIYNNLHKILDLVFLSADINFSLVQCNSPIS
NCDIHHRPLLLGINFYSFAPSAEHSPRFIFNETSLCSIRNEISAINWESVLSHISLESCYDTFLVIILNIIKNNARERDQ
SSFKLPWYTKGLKTLKNRSLDWNRHLQHKREFEFLNKFLYNQYIADVEIGLKSNPNSFWRFINSKKKTSSVPSAMFLGNL
SSHSNIETANLFASYFKDNFEPTGAWNDSQTLNAITPLLNLGSLIVLEENIHKAVEDVDESYTPDCDGIPAFILKHCINV
LCVPLKIIFDKSLSSGHFAERWKVASVTPILKSGPKNNIANYRPIAKISNIAKLFERIVAHKLSFLAKTYVSTSQHNFVA
GRSTTTNLAVFSNYCVQAxQKLATVLYWQIGMYTQARLGIHSALLNWIKSYLHNRLYRVNINGNFSDSYLATSGLPQGSA
MGPLLFIIFINDVRFCLSSECLLYADDLKIFKSIKIATDSQSVQQDLDSLSSWCSRNALPLNINKCFYVTYSKSVYNFFT
SYNINGQPLQLRQESLDLGVMFDSKFKFSAHFDYILPRAYAMFGFVKRNASLFTDPYTRLALYFAFVRSKLEYAALIWNP
FTSTHGNRIERLQKQFLKFALLPLRLLDPVPSYHQQCKLVRLPSLAHRRNILAICFIFDLVNGGIDCPELLSKVGFNAPS
RQLRNFDPFFLELRRTNYSQNEPLYRALSEFNALPADMQSDYFPNKTILKHRLINYFVNVST
>CR1-16_BF_pol#LINE/CR1 452-3436  [Branchiostoma floridae]
MGFLQLALSFVSFMATMSLSPNLNVIYLNARSVKSVNQYRNKLVQLQNLINLEAPDLLAITESWLTPDVHDQEVIPPDFV
TYRKDRYDTHNNKAGGGILLAVRSTVCSRRRPDLEPQDEILVCELHPPTVGRIAVVLCYRPPSGDLAPFTRNLCSVLESV
HNEYSMCCVLGDFNLPRIDWSSCVVTNDGKEADFCNLINNHFLQQLNQVPSNSCHNLLDLVFTDFPERFSEIRELPAVFD
TDHTVLEFTLQCRIQHKRGLPRKVYNFKRADWGGLNAHLESSGLAESVTNHPDIDSAWEAWSSAVQSAVDTFVPSRKLKV
STTPPWIDSEVRNLQNRKRTAWRRAKRTDSPSHWTKFRKLRNRLKNVLSAKYKKYLESLSSTLHESPKSFWAFVRAKSKS
KSLPSVVQLEGIIAQSPIDKASMFNDYFFSTFTKPDIDTVNPVIDIVSDDALCNLQFSVDSVHKVLATLDPNKAVGPDAM
SPHVLKRCADVIAPSLTLLFNKSLALGKFPSHWKDAHVTPIHKKGDKEVVSNYRPVSLLSTVSKVMERCVHDSIIPRLHA
SIHNLQHGFMKGRSTTTQLLEVYHQVGSILDKGGQVDMLFLDFAKAFDSVPHALLVHKLQMYGFSGSLLSWIESYLTNRR
QRVVVEGSRSDWRTVTSGVPQGSILGPLLFVLYINDLPDSARNSMSALFADDSKCFREIRSTNDCSKLQQDICSLHDWSI
MWKLTFNLSKCIVLRFTRSKYPIRYDYHMSSSNLTVVDSMSDLGITVKSNLTWNSHVIRTVAKANQMLGFIKRSIGYKSN
TDIRKTLYLSLVRSVLEYCSSVWSPTSRNLTALIEGVQRRATKYILGPSAEHLDYKSRLSRLGLLPLSYQREMSDVVVFV
KSLAKVYDSDLARLAAFPTRTPRSSRAHMLVPQRVRSSSFASSFTPRLITIWNKLPVEIRGLGASATSPSDVSAFKRKLS
TFMQNRFRQNFKLEQACTWSLACCCASCIATRPR
>CR1-14_Crp_pol#LINE/CR1 1432-4354 via tfasty with CR1-6D_AMi_pol, 2 frameshifts. [Crocodylidae]
LASPGEGAAPSGEDASPACRVTRAKGAQVSNNVLGAGGHNCPGSGGEARAPSGGLKCLYTNARSMGSKQEELCLLIASKN
PDLVGLTETWWDPTHDWAVGIRGYTLYRRDRTERKGGGVALYVKEHLTSSRISFGLEEGRAETLWVKLQGGRGERDLTVG
VYYRPPNQGEELDQDFSSQLMEAVRSRDVIVMGDLNYPDICWEEQTARSDRSRRFLAVLQDLHLIQEVHSPTRGNALLDL
VLATGDDLVRGLQVLDHLGNSDHHLLDFTIQRRVSRAYTKAKALDFRRANFNELRRLVGEALRAQKVEEMGVHEGWSYLK
GAILQAQRVTVPERSKGGKSAQKPPWLSKGIQQCLRTKRGAYNQWKGGAITKEEYSSSARECRRAIRKAKAEMELRLASR
IKDNKKSFFKYIGSKKRAPGNVGPLQDANGNLVATPDKKADIFNSFFASVFLNRDRDIPPTRGRDNLGDSSVRPSVSADV
VRDLLEGLDIFKSAGPDALHPRVLRELAGVIAEPLARLYEHSWSSGQVPGDWKLANVVPIFKKGRKEDPSNYRPVSLTSV
LGKILERIIKEHICGGPAGEIMLRGNQHGFIKGRSCLTNLIAFYDQVTKSLDDGVAVDVVFLDFKKAFDTVSHPILINKL
SDCGIDAYTVGWVKNWLMGRTQRVVVDGSYSTWRDVSSGVPQGSVLGPALFNIFISDLDEGVESTLSKFADDTKMWGEVD
TLEGRERLQIDLDRLQKWADENRMGFNVDKCRVLHLGRRNPQHTYRLGSSPLESTEAERDLGVIIDSKMNMSRQCQTAAS
KASHTLSCIQRCISSRSREVILPLYATLVRPQLEYCVQYWAPHFKRDVASLERVQRRATRLVRGQQDRPYEERLRDLNLF
SLSKRRLRGDLVAAYKLIRGDQQQIGETLFSPAPPGVTRNNGNKLMENRFRLEIRRQYFTVRVAKIWNQLPREVVLAPTL
GKFKRRLDDHLSGVL
>CR1-19_HM_gag#LINE/CR1 805-1527   [Hydra magnipapillata]
MTNLTPAQLKQVEDAIKKLIHAETAKWSAKISELEQVIKQQQLIIDKLIQNPNELTNTTTSSIESSWVTVASKNIKKKQP
IEQLKIINTFAIEQQQKKKREKNVIIYGIKESAKLSVADKHIDDKETVQNILVTISSDAKPKSVKRIKSTSSKPGPIIVE
LSDVSERNPLLTAAKKLKNSDNYKNIFISPDLTEAERYLNYQLRMKRNELNSNINLKTSPFRYGIRSSGVVKLKNIQTTT
>CR1-23_HM_gag#LINE/CR1 769-1644   [Hydra magnipapillata]
MSAIEEIATNAFKAAVDLKDLNATLMKSYQNDIALMIKAALLVALAEEKRSSELREKALKDKIDLLVKQINELKEIKPTA
TPSFASLLKDKSDESKQQRQQLSTFIAAQNKNIRSRELNVIVVGLNKSSTVDDKKLVEDFFVATGLEDATGIARVNRLKS
SKNKTKLSNSNIIQVSLSNLSSRAEILKKCAHHKQEIYKGVYVREDRTPEQQTEFNTTRTQLKKLNDQLAAANILDNPFR
NVIHRRTGRICCIDVIESTSNQCYVFSSPARALSDYASRTAASNSEISTAN
>CR1-20_NV_pol#LINE/CR1 19-3468 [Nematostella vectensis]
MAANFLTPVFIAFLAILFNQKLHYSPNLTSGINGFGLNCILANSESILTGLEAFYSHNIRANKMNVGRSSSEHKHLLLCL
LLLGGDIQLNPGPKWKFPCGSCNKPVKSNQKGIQCDNCNLWYHTRCCSINDDLYYTLAASSCTWLCVSCGFPSFSSSLFE
SSSIELQNSFSSLDSLHQDTQNISSSTIRSPETSPLDSSSRNSSNTRKQSKEKLTGMILNCNGLKGTDHITKFQALINLH
DPDFILGTESKLCPDISTYSIFSQNYSVFRRDRNKFGGGVFQAIKSDLVCTEEPDFEVDNCEIIWTSLKLANRKSIYMSS
YYRPPNQPSDSIDNLNESIRRVFNKVKNFPNIIIGGDFNLGDIEWNSSVPTPTNPATASLHQKFLQTIDDFSLSQHVKTT
TRPSSGKTLDLLLTTYPNVIVNTSTASGLSDHLAVIFEVNLKPSRSLKPPHKVYQYKKANFPDLCKFMSDSSTTFFSTNP
EKRTVEENWVLFKTSLSTGISQFIPQKSSRPKYKLPWINTNIKREMRKKDRMHKKAIKSKNQQHWEAFKRQRNLVSKLIK
DSHNDYLNNIIGNSLKDNPKKFWSYVRSSKSESIGIPPLKNNDSSVSVTDAHKAETLNTFFHSVFTQEQLPTPVLGNSPY
SSIPDLHISAEGVCKQLSELNPKKACGPDEIPANVLKEVSQSISHWLAFIFQQSFDCNKIPSDWSNALITAIHKKGLKSE
PANYRPISLTSICCKIMEHIILSHMAKHLSSHNILINQQHGFREKFSCETQLISAIHDWAKTINFRGQTDVLLLDFSKAF
DSVPHQRLLIKLDFYGIRGNMLNWIKAFVSNRKQSVSVNGTVSSSKSVVSGVPQGSVLGPVLFLLFINDISTSIQSNLRL
FADDCVLYREVASLQDCQALQQDLDRLSVWSKTWQLKFNVSKCYHLGITRKKIPVKFTYSMDGKCITQASSTPYLGVTIA
DNLSWNEHCDNICKKANSTLGLLKRILSGCSPEVKDSAYRTLVRPKLEYATSAWNPYTQCNINKIEMIQRRAARFVFNDY
SRYSSVSPMINSLGWESLEQRRQLNQAHMFYKIYNGLVGISFPPEVTPITRVSRQPNCAPFHQLVTLNDTYKYSFYPRTI
RTWNSINLSTIPDSLAKFKDSLLLKVQTN
>CR1-13_BF_gag#LINE/CR1 431-1870  [Branchiostoma floridae]
MMSEVDISVPDPLADKLADTNLWIKCYMKSGFRAREEDVALSLVESTQHHGADGVRPSDILGVQVIPPMIIINLSNPKVK
AAALKQAHIQLHGKDLTLLDFVTTPLTKPRLTRISIHGVYHSVPDVVVADWVDKFSIRATPIERHLVKNATDMFKHLRTG
HRFCYVEKFTERPPPRFTTISVPHPLNPSECTDIDLEVFCGQGQIVNCRRCKALDHKAYECPNITCFSCGMTGHTKANCA
SITETERHPTRYQRRSADRDDSVGFSPQTQDSVDMINRAFNKYVRPAVPTSNRFQSLARLEDESDIAIAGAIRDIRVQHT
DQRPSAVADADRRHLSNHRNKRRSRASRLMSAEEPHPNSDVTAPSYRPSNDRYNLRNRKRSLPSPEQRTHPATKKQNAER
FQVSQGVPKPARDLHTKTVSHITTPPLTTDVPPLDLRTTCEESLSAMPATSPPVSTVSCDTVRDCATNTHSNSRPLVGE
>CR1-9_DTa_pol#LINE/CR1 1467-4292  [Drosophila takahashii]
LDFVLHYQNVRGLLSKLSRLHTDSAAFDSSVIAFTETWLNPTVSDNEILTNNFFLYRRDRPSKRGGGVLIAVKSEISSQV
VSIPNVGDIEFMSVKICLPNCNIFVTCSYIPPCSEAPIYMRHLSAIQNISSYASDSDHLIILGDFNIPYLSWSPCVDLIA
LVPGDQNDFVDGLIDLSLGQVNSISNANGRFLDLIFVSDLCDAIVTRTSPLTTPEDSHHPTLQLSISGIFRVPNSFEAPL
RTRCFRHVNYLQMSRSLSSVDWSCLDSLHLDEAISTFYNVLYSIFDELVPSTVVNNSNSPPWSSKHLAHLKNIKTKLXKK
FAKTGLQSDFSKYSVAKSNYFLHNSECYNSYLLRCKNEFRSNPKLFYSFVNSKRKANKFPPSLQLNNVSASNDQDIGNLF
ADFFQSTYCKNNTGINCSYSYQLPHTDAIFNPLIDEAEVLRSLSTIKLSFSAGPDMVPSCVLKHCAIPLAVPLTMIFHKS
IATGTFPSMWKESFLIPLHKKGSKSDISNYRGIAKLSAIPKLFEKLICDQLQHQCRSLISSKQHGFTKCRSTTTNLLEFT
TFISQGFKSTMQTDVIFTDFSKAFDSVNHELLLHKLLLLGFPPTLLTWLRSYLTNRTQKVQYNSIYSKAVSVYSGVPQGS
HLGPLLFGLFINDLPQVIEFSKVLMFADDVKLCMHLTSPSSYMQLQLDLNNLQSWCLVNKLLLNPDKCKSMSFYRSNPYI
CTYSIDHSALERIDTVLDLGVLFDHKICFNRHVSTISNKAKCLLAFIKRWSKEFDDPFTTKLLYVSLIRPTLEYCSSVWS
PQYEHYQNMIESVQKQFLLFALRGLNWEEGRRLPSYRDRLRLLDLPTLKDRRTCYGVILLHKLITGAVDSVDLLATLNWN
VPCRATRRFRPLALPVCRSNYSRFDPFRILCDNYNELYHLISYECSAKANSLKVIAFLSTST
>CR1-8_DTa_gag#LINE/CR1 520-1509  [Drosophila takahashii]
MSLRCSAKKCDFGGNIACETYLLCWLCDNCSHVKCGGGGHNGRIADLLSKKSGFTWSCEACRGIEMEMRIFMRETRNGFQ
RVRKQFAALNNEFLSVESRFLELKLLSESPTETNLASNTTIAPVAITATHQPLPAAPGPTYNRMDYTEPANGLTEPAAAL
HVEPISTAAPITVAPVAPAIASPSASVRRKTGVVSGSAQLDTRKADAAASTTAPVDPPLMGVPPPSRSSGSRIRAVSPRR
AIFVSRLVPDATPDAVKNHLCSKLEATSDNFIVTKFNFNHARKISSFKIFLPPSLLSRALEPTLWPEHTIVHEFLQKDSN
PSSKITDPKN
>CR1-11_BF_pol#LINE/CR1 398-3898  [Branchiostoma floridae]
MTCFVTFSTILGSILLTAHCLVLIVNSHHDPSPFTPRHEGIPHTLKPSFNSPFPLTPLLDNTCANHPLKLTLVSIFINSN
GKLAPHCRPKFTLFSLTLIILLAGDVELNPGPRAPKYPCGVCHRAVRWEKVDGRHAICCDSCDVWYHTDCMGMSTPVYNT
INNPNVSWICCSCGLPNFSSSLFNTTVFETSNCFSSFNTSTCSSPARSIGSPIATSSPIGYGITPPPRDRTHTKPVRTCV
INFQSIRNKVPELHAFCEAVQPDIVVGTETWLDSSVGSSEIFPDTYNVFRRDRAGRGGGVLVAVKNNIIATHHPDPDCPC
ELTWVRVHLANSKSIYIGAYYRPPSAGHDDFVALERSVLQKRANNNNAHIWLAGDFNLPDATWNPEANTTASNPSTLTSN
YISLANDCGLEQMVCEPTRTVGQTSNTLDLFLTTNSTLVERVKILPGLSDHDIPLIDVQVKPQTSNSKDRLIYLWRKANI
DALQQDMATYSREFADQAQHNTASENWELFKAAVSGAANKHVPRKKVRPQSNKPWITPQIRKAMRKRSELFSKARRSNSN
EAWAKFKRCRKGVKQRVRKAHRDYVSNYLESNIEDNPKAFWSYVKSIRQDSTGASALRHQGVLTSDPKEKADALGAQFES
VFTREDKTTVPTLGEPKAPTIPSLNITVEGVAKQLSCLNPSKATGPDGLPPRLLKTVAEQIAPILQVIFSQSISTGDVPE
DWRTANIAPIFKKGDRTLPSNYRPVSLTSVCGKVLEHIVHSHMMKHLDAHGILSPAQHGFRKGLSCESQLVLTLQDLAKN
MDQNKQVDAAVLDFSKAFDTVPHERLLSKLEHYGISGLLQSWLRAFLTERTQRVVFDGGTSKAVKVTSGVPQGTVLGPLL
FLLYINDLPDSVDSHVRLFADDCLIYRTISKPSDAQGLQSDLDALTEWQNRWLMSFNPSKCHILHITRKKHPIITQYSLC
GEALTGVKSHPYLGVQLSDDLRWDTHINHATSKAGKVLGVIRRNLTHCPSRVKATCYKALVRPHLEYSAIVWDPYTNKGI
QAVEAVQRRAARVTLNDYRQTSSVTQMLSDLQWRPLSERRRNARLTFFYKVVNNNINIDASNILKPAQGRTRGSHDFKYQ
HIFARTDIYKHSFFPRTIPEWNALPGTVVSAPNVEHFRARQAACPP
>CR1-12_Crp_gag#LINE/CR1 1-822 via tfasty with CR1-10D_AMi_gag, 2 frameshifts and 2 stopcodons. [Crocodylidae]
VRELQEEVNRLRIIREHEAEIDIYCQALHLEKNATETRQKSGLEQDAPTDSGWKLVTSGPKPCCASVAPPIALHNSYGPH
TIDGWGICALSPKTGQEQPTPPRKQRRVIVMGDSLLWGTEGAICHPDPFAQEVCCLPGARIRDVTVRIPKLVHPTDHCPM
LLVHVGTKDMARNSPGRIMRDYKTMGAKLKELGAQVVFSSILPDRGRGRWREECIEEVNxRLRRWCHHVGFGFLDLGMxF
NGSGLHARDGIHLTGRGKKLFSMGITDLLRRALN
>CR1-12_CQ#LINE/CR1 16-3803 via tfasty with CR1-5_CQ_pol, 1 frameshift. [Culex quinquefasciatus]
MIKHTKEIPSLSAAASSRSAPVVSHPYPAHGDRAGGFRPGFSGKYSCCPSNSPLDKSXVSSESSSRQPLQNSILXIPSAR
SKSVRNFSDYGGALAPPTTLQLSGPAIVSNLIVSAEVSRRISVAPNSIETASPGRFLLSTVGALNSPAAADTIAEPAISK
TQLAGHLSRPGDVCGYGARVPKSSASGKYSRCGTFSLVDDHPHSSSDRRHSPARAAALLHSGRLIQSPVEAPERPVAVLP
HVNAQQSRPEPAYGHREGVFQRQLSGEYPVLEHMSRADDLLVSSTSLRTTSAAEAPNRLDTQRALSFYYQNVRGLRTKID
DLFLAVIDCDYDVIVLTETWLDDEIFSPQLFGTGFVVYRNDRDTVRTGKKTGGGICIAVSKKFDSTEFPVPTDASSLEQL
WVVINGVADQKLYVGSVYISPDLARNSAVIESHFNSASAVAEAMRPNDLHLLLGDYNQPKITWAKFNSRHAHPSSSSASY
PLSSSTLLDGMALLGMKQLNDVSNNLNRTLDLVLIDDDSVNYCSVAEAPEALLRIDPPHPPLEVTVSLRVPVPFIDEPDT
RSYNFYKADFPALNRALLGVNWNALNETQNVDEAVAFFNSTLKTAFRDHVPTRAPPRKPPWSNDRMKKLKRRRAAALRKY
SARRNPVTHRAFRLASKRYTHYKRHRYGIHVRRTQENLKRNPKLFWSFVNEKRKETGLPAKMFLGEANSTSTEETCNLFA
QHFLSVFRPSPATPDQVRSALRAVPADALHLSAVPITEEDVRMAIAKLKSSSSAGPDGIPSIVLKSCAVAVTKPLQRIFN
LSIQSETFPNCWKSSYMFPIFKKGDKRDVSNYRGITSLCAGSKLMEIIVNTLLINATKGYISTAQHGFFSGRSTSTNLVD
FISFCKRNMEGGGQVDVVYTDLKAAFDRIDHRILLAKLDHLGVSCKVVNWVASYLTGRTLSVKIGASESVPFCMTSGVPQ
GSNIGPSFFSVYYNDVTFVLPPGSRILYADDLKIYQPIHNVDDCRVLQQLIESFTQWCDSNLLSVSFSKCSIISFTRKKH
PICWPYTIGDQPLERATVVKDLGILLDEMLSLSAHYNAVISKANRNLGFVFRIANEFRDPACLRALYYALVRSHLETAVV
AWSPHTDEWVTRIESVQRKFTRFALRFHSWPDQVVAPSYEQRCEALGMETLSKRRQFLRAAFVGKLLLGAIDAPNILARI
NFNVIPRPLRTWNALRLDFHRTQYGQQEPIRAMCDVFNDFDDLFDYSMSVDSFISNLRRTIFV
>Copia-42_BG#LTR/Copia 233-5380 56.2% sim to Gypsy-26_BG, SW:1883, [Blumeria graminis]
MTPKPPPSMIEEPSKASPTELAEYIYDLIDAWNIHNFRDWELWELYTNCFEGWTEQDFTRIDSVTKSTLRKYLIEHGVFM
VRVHDKGKGSIAKQLMEPLEIEKYHDWSMEEYDSWANPMSGARFNIDSICNPHDPNYNGPKQKSKEMLCDARDLKRENGK
IRYEDNEAKIFEELEKQDDAIDKQPSATSLPINDRAEEYRPQPKNRQLESLIRLYKETDKYKDGTDSFDYKLMIFLDNCN
NACVEPKHYASALTNMFILPARDVYLDGTLNKFEMTFEERCNLMKNHYETEPWRIRRENIWNGMDLTLLLRQNPGQTLSE
TFEWLNTETRRVQRGLANHQGDFSLRQRIISACYGCAELRPVLLEPPPDAEGVCNKIRAQIAQLEFTSPTGSFMRTVPAQ
NSVLMTDRHYNTVESNHKGRRFNDRVSSNTPFIARNGSKLPTKWTKRCLVCQKPNCWSTNHTSDKRQRSYDRIKQKFPAK
NQNRVRQFIVNFEGTADEDEFDAMMAECDAEFEEVQISDNEWPDDNDPAFTGLIKEIGGEESITYLNEQMAEHFFTAPRF
PPICINDDTRTGVRGYILRAEPPDLLDFSNTDVPYSKTINSGNILAFDDVQTLGRKEERYDDRYFHGLLVDTGAAGHSTA
GIGQVKALQRLRKCLQVDNSKAGVAKITGIGKGMFASIGTVSLDTPIGSVEFHVIPCNIPFLLSLKDMDRLNCTVNTLQN
TIVKNGKVAANLIRKYGHIWMTLGHIQSLFIYTEDESPTCYFTEQQLRTIHRRFGHPSATRLWKILRRAGHEAEFKLIER
LTKFCRDCQLSGNKPLHFKFSLRQDKEFNHTIYVDILWLEDGPAVHVVDDATSFSAAEWLKGAERESAEEVWNAIQRCWI
NVYVGPPEYLVHDAGKNFSSSSFRKNCSESKIEVKEIPVEAHNSVGKVERAHKPLRRAYKIFKEQFTGQAIDRDTLLSMA
VKACNDTAGPDGLIPTLCVFGAYPRLTWDDAPSPTTIQRADSIRKAMAELRRYRANQMVQQAANMRNGPSHSHLENVPIG
GQVRVWREGNNKKGLWTGPWNLIDKNKETITVNINGKHCNFRSTSVGKWFDKDDDPNNICQQRDTKQDDQKSQCGLSNQS
LGIQLSNQPRSLPNAQLHTPLLRRSQREGRFNGRHQFKYQCCKWTGTENDSSQVFMSPQEQEALQLSMNLRAAGLIRTPG
EPFEASTKQEIEGLMKSGVFEFKRFDESMVDKRIFNSRMVNTIKGKTTIAPFEKSRLVVQAYNDKDKSMILTQSPTVQRA
SVRLILALAIPLRRKFNHVVFLRDISQAYTQSKTSLTRDILCRPAPEVVRALNLDPGIIMRILKPLYGIPEAGNHWFGTY
FKHLKEMLNMKPSCFDPCLLITSNGNEFGVAGMQVDDTLFIGTEDFVKLEDTKLKEAKLKAKNISRLTENESLHFNGLII
SLKDDTLLIQPNGQGNKIDLIDPEDSGRFLTYKRMRALGAWLASFCQPLVSFRLSQAAQFQEPGNEEIKDLNIALQTQKN
NPSAGLKYVDLNLDDGLALYAWVDGSLANNKDLTSQIGFVIALGNETRGKNAFTFQGNLIHWSSTKCKRVTRSVLASELY
AMTQGIDIAIPLCTTLNQIVAQLGLPTVPLIICTDSLSLYKCLVKLGTTKEKRLMIDIMAVRESYERRELAEIRWIHGKD
NPADAMTKHKPTTALQRLFDTNKLECRLQGWVDRRT
>GB:CAA30086 ORF B (ISa-element) [Escherichia coli]
MKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKKRISEIYHENRGRYGYRRVTLSLHREGKQINHKAVQ
RLMGTLSLKAAIKVKRYRSYRGEVGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSER
PVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSAKGNCLDNAVVECFFGTLKSECFYLDEF
SNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQTYMPRV
>GB:CAA68803 ORFII (AA 1-103) (ISa-element) [Escherichia coli]
MPERELRLFYYLNCLSLQWFHRSYRNPARAENPSCQSAFLLQLTSAILASEPGRYNQLLQKQVSGYIRDANRIPGQQCVS
RLPFAQIGPAVQRLCCRLAQNQ
>GB:CAB60068 IS6110 transposase (ISa-element) [Mycobacterium tuberculosis]
MSGGSSRRYPPELRERAVRMVAEIRGQHDSEWAAISEVARLLGVGCAETVRKWVRQAQVDAGARPGTTTEESAELKRLRR
DNAELRRANAILKTASAFFAAELDRPAR
>GB:P19774 PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS986/IS6110 (ORFB) (ISa-element) [Mycobacterium tuberculosis]
MPIAPSTYYDHINREPSRRELRDGELKEHISRVHAANYGVYGARKVWLTLNREGIEVARCTVERLMTKLGLSGTTRGKAR
RTTIADPATARPADLVQRRFGPPAPNRLWVADLTYVSTWAGFAYVAFVTDAYARRILGWRVASTMATSMVLDAIEQAIWT
RQQEGVLDLKDVIHHTDRGSQYTSIRFSERLAEAGIQPSVGAVGSSYDNALAETINGLYKTELIKPGKPWRSIEDVELAT
ARWVDWFNHRRLYQYCGDVPPVELEAAYYAQRQRPAAG
>GB:AAC05648 probable transposase-related protein (ISa-element) [Leptospira interrogans]
MKGRRKYSPEFREQAVNRTLNGSFTIKEVAESLGVSYFVLRQWKAEHLKKKETEQPLTDKQLKESEELKRLRKENVRLKD
ENAILKKFAAMLSREQNPD
>GB:CAA68802 ORFI (AA 1-371) (ISa-element) [Escherichia coli]
MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSSLREVTAWAQLHDVATLSDVALLK
RLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRF
AQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAG
APFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLK
SLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN
>GB:CAA82360 putative transposase (Mariner_Tc1-element) [Drosophila hydei]
MSQYSMQKNFRLLQISRSLATMVRGKPISKEIRVLIRDYFKSGKTLTEISKQLNLPKSSVHGVIQIFKKNGNIENNIANR
GRTSAITPRDKRQLAKIVKADRRQSLRNLASKWSQQLAKLSSESGRDKLKSIGYGFYKAKEKPLLTLRQKKKRLQWARER
MSWTQRQWDTIIFSDEAKFDVSVGDTRKRVIRKRSETYHKDCLKRTTKFPASTMVWGCMSAKGLGKLHFIEGTVNAEKYI
NILQDSLLPSIPKLSDCGEFTFQQDGASSHTAKRTKNWLQYNQMEVLDWPSNSPDLSPIENIWWLMKNQLRNEPQRNISD
LKIKLQEMWDSISQEHCKNLLSSMPKRVKCVMQAKGDVTQF
>GB:AAD03792 Tc1-element transposase (Mariner_Tc1-like) [Anopheles gambiae]
MGRGKHCTPEERKDIQGLYRENVPIKTICKAFGRSRSFVDNAIRSEATGKSTGRPRKTTADVDARIVEMIRADPFKTCTR
IKQELGLQVSAKTVSRRLHAAGFCARRPRKVRKLQHHHVEARIRFAEEHLAASIFWWSKIIFSDESRINLDGSDGIKYVW
RFPNQAYHPKNTIKTLSHGGGHVMVWGCFFWHGTGPLFRINGTLNSEGYRKILSREMLPYARQQFGDEEHYIFQHDNDSK
HTSRTVKCYLANQDVQVLPWPALSPDLNPIENLWSTLKRQLKNQPARSADDLWTRCKFMWERIDRSESRNLIGDMAKRCQ
EVIANNGHQIDR
>GB:CAB51371 transposase (Mariner_Tc1-element) [Pleuronectes platessa]
MKTKELTKQVRDKVVEKYEAGLGYKKISRALNISLSTIKSIIRKWKEYGTTANLPRGGRPPKLKSRTRRKLIREATRRPM
VTLEELQRSTAEVGESVHGTTISRLLHKSGLYGRVARRKPLLKGIHKKSRLEFARSHVGDTANMWKKVLWSDETKIELFG
LNAKRYVWRKPNTAHHPEHTIPTVKHGGGSIMLWGCFSSAGTGKLVRIEGKMDGAKYREILEENLMQSAKDLRLGRRFIF
QQDNDPKHTARATKEWFGLKNVNVLKWPSQSPDLNPIENLWQDLKIAVHRRSPSNLTELHLFCQEEWTNLSISRCAKLVE
TYPKRLAAVIAAKGGSTKY
>GB:CAA44991 transposase (ISa-element) [Bacillus thuringiensis]
MNLSIQEELQPFVEELQRYITPEFLEELAREMKFVKRKRKFSGSDLATICIWISQRVASDPLVRLCSRLHAVTGTVLSPE
GLNKRFNEKSVLFLKHVFSLLLQQKICEQTYISNQLLSHFKRIRIMDATMFQVPHTLEHIYPGSGGCAQTAGIKIQLEYD
LHSGQFFNFQVGPGKNNDKTFGTECLDTLRPGDLCIRDLGYFSLEDLDQMDQRGTYYISRLKLNTNVYVKNPSPEYFKNG
AIKKQSEYIQINVIQILNQLQPGETIEYQQAYIGDKQQLFSRLVFHRLTAAQLQKRLKKIAEKEKSKHRTYSEKSKLVAG
LNVYVTNAPWEWVPMEQVHELYTLRWQIEIVFKTWKSLFDIDHCRTVKQERIECHLYGKLIAIFLCSSTMFKMRQLLLQK
KKKELSEYKAIGMIQDHLFLLYQSIQNTQEITKLLTRLFHLLQQNGRKSHRYEKKTVFDIMGVIYEYSGCSKQKKAA
>GB:CAA23539 IS-2 ORF 4 (ISa-element) [Escherichia coli]
MQCLTITAVQRERDTQSLSVITAELEPVRAPSLIAFFHGHSACMCPFRWRYSRFSLKQQRILAHDPVNTFGIDRRHTIKF
CLSAKQRPYPTITIRWQLSDNMVYTEKHIRIISVTTAAAIHPVIGSSENDVQLRTRHPETTAD
>GB:AAA25862 IS401 transposase (ISa-element) [Burkholderia cepacia]
MNREGIRVARCTVERLMKRQGLQGVRRGKVVRTTTPDTSAPCPLDRVQRVFKAERPNQLWVSDFTYVSTWQGWLYVAFVI
DVYARRIVGWRVSSTMRTDFVLDALEQALYDRQPASDTLVHHSDRGSQYLSIRYTERLAEAGIEPSVGSRGDSYDNALAE
TINGLYKAELIHRRAPWKSRESVELATLQWVHWFNHIRLLEPIGYIPPAEAEANYWRQLASETIALVST
>Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain)
DQVYGYDEIEPMFGDDDMDAKAAHVNLSKENDNMFVGRTFASREDFRIALSIYAINFIFRFKFTRYEKHYLVVECYDKQC
CDWRVRAHQVGDSEEYEFRKAKSEHMCKVETRSRFSKHVTSKVIAAFLRAKYAKAFCGPRARDLPDSLLREHNVRMTYCG
CWKAKELGV
>Q9S9W4 /247-408 Pfam PF03108 MuDR family transposase (MuDr-element domain)
NIPPLFDDTEYERDEIPELDIEDDEKGIYKGRVYASKQDCQISLAIHAIKEQFYFKQSRTKRHYFVITCADENCQWRIMS
HEMKTCGYYLIRKADLEHTCNIETRGQYMKMATSRVIASVYKAKFSKFSEGPVPLDLQQMVLEDLRVTTSYGTCWRAKEK
AV
>Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)
DAAPTLDEQGEEGRVGMELAIRDVVYEGDELFVGRVFKNKQDCNVKLAVHALNRRFHFRRDRSCKKLMTLTCISETCPWR
VYIVKLEDSDNYQIRSANLEHTCTVEERSNYHRAATTRVIGSIIQSKYAGNSRGPRAIDLQRILLTDYSVRISYWKAWKS
REIAM
>gi|15724047|gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) [Arabidopsis thaliana] (Gypsy_Ty3-family)
VRKEVLKLLDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRKCIDYRKLNAASRKDHFPLPFIDQM
LERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSISSDLIEEMVEVFMDDF
SVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGHKISEEGIEVDKAKVDVMMQLQPPKTVKDIRSFLGH
AGFYRRFIKDFTKV
>O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain)
DGRIEYYELPCVGEGSQSSEKSQSVKEWEDGTGIELNQEFVSKEVVQDLVNIVANKYCFATATIVLDPQRLMLRCRQSKT
TGCQWYLRCAKVKSSDCFSVRVHRKMHTCKRSDKNSSNCKHTGTPRLIASILHEDYPCEFQTPPPKSIMSIVRGRMNLHC
SYATTWRGKRQHD
>GB:CAA40555 TNP2 (CACTA-element) [Antirrhinum majus]
VYSFTMDKSWMHKSRLTEEYENGLDQFLDFAFDNVCLNGKIICPCKQCKNALWMDRETAKEHLIIDGFIKGYTHWVIHGE
GSSNSQNNIQNERLNTFEDMHNLVHDAFGVEDDNINSEEEPNEEEEPNEEAKTFYKLLDDAQQELYPGCKDFSRLRFIVR
LFHLKCLGKWSNKTFTMLLELLKEAFPEQTNSLPKSYYEVQKIIGALGLTCVKIDACPNDCMLYRKEHANDDACHVCNTS
RYIEGENNSVSEEASSSKCKRVPAKVLRYFPLKPRLQRLFTSSKTASFMRWHKEERTKDGQLRHPSDSPLWHAFDHQHPD
FAEDPRNIRLGLAADGFNPFRTMSVAHSTWPVILTPYNIPPWMCMKEPFFFLTLLIPGPSPPGNNIDVYMQPLIEELQEL
WGGVNTYDASAKENFNVRAALLWTINDYPAYANLSGWSTKGELACPSCHKDTCSKYLQKSHKYCYMGHRRFLNRYHPYRK
DTKSFDGNEEYRRAPIALTGDMVSEEITGFNIKFGKKVDDNPTLPLNWKKRSIFFDLPYWKDSLLRHNFDVMHIEKNVCE
SIIGTLLNLEGRTKDHENSRLDLKDMGIRSELHPISLESGKHYLPAACYSMSKKEKEIVFEILKTVKVPDGYASNISRRV
QLKPNKISGLKSHDHHILMQQLLPIALRKVLPKHVRTPLIKLCTFFRELCSKVLNPQDLVRMGKDIAKTLCDLEKIFPPS
FFDIMMHLPIHLAYEAQIAGPVQYRWMYPIER
>GB:CAA23879 insB (ISb-element) [Escherichia coli]
MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTM
ATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY
LNIKHYQ
>GB:AAF34901 transposase (ISa-element) [Corynebacterium glutamicum]
MGPYYGPRTLHQVLREDYTTLFDELSALGLPAQVCGALLHLAPPPSLRFSYMSCVVPLFADEIKVVGQGTRLSLEEKMMI
QRFHDTGVSAAEIGRRLGRCRQTISRELRRGQDDDGRYRARDSYEGAIRKLARPKTPKLDANRRLRAVVVEALNNKLSPE
QISGLLATEHANDSSMQISHETIYQALYVQGKGALRDELKVEKFLRTGRKGRKPQSKLPSRGKPWVEGALISQRPAEVAD
RAVPGHWEGDLVIGGENQATALVTLVERTSRLTLIKRLGVNHEASTVTDALVEMMGDLPQALRRSLTWDQGVEMAEHARF
SVVTKCPVFFCDPHSPWQRGSNENTNGLVRDFFPKGTNFAKVSDEEVQRAQDLLNYRPRKMHGFKSATQVYEKIVVGAST
D
>GB:AAA21567 mudrB of transposon="MuDR" (MuDr-element) [Zea mays]
MDCPPSKVVADAVEAARAAAVAASEARCAVFVAEKEAKAAVQFAAIAVEKVEAVKASSNVDLVDFKYHVSIKNSLRYAIQ
EMRRQSKLLHSVQKLCSTIPEVQGGKIGKVRGFLEHVCKELDKTSSICEEDLETKNPTWDLYDNPSVDDEHPLDDDELGD
GYSTEDPELWEMVFDDFKWEEIKANVSFEEHYRVINYRFEEINDRNM
>GB:AAA66267 unknown protein ORF2 transposable element En-1 (CACTA-element) [Zea mays]
MVEVKHASRYKGNEYNNIILAHQAHQVYYLSYPHKSFKTWWVAYKVNPEVHPYRYQNYNLSTNDDDEDDVVFQEVGDQAD
DSDNDSIVSEGAGLNELASLTVELMEEPISSNSKRQRLEETVLETQQWVEQLNTRVAEEDSDADDF
>GB:AAA66266 unknown protein ORF1 transposable element En-1 (CACTA-element) [Zea mays]
MSDDRRRAMYDGFDSVTHGHSDAWLRVADEFVALAFVGDARLARCPCIKCRNLVRLKKVELSYHIFKHGFMPNYLVWHEH
GEVDHTIESDGDQDIDRMEEMLDDIRNEYPDLQNNQAFPEDVREFYKLLEASEAKVHEGTNVSVLQVVTRLMAMKSKYTF
SNKCYNDIVKLIIDISPPNHNMPKDLYHCKKLVAGLGMNYQKIDACEDNCMLFWKEHENTTHCIHCSKSRYAVVLDEDGN
EVTTKVPIKQLRYMPITPRLKRLFLNQETAKQMRWHKEGDRQGQDPDVMVHPSDGEAWQALDRFDPEFARDPRSVRLGLS
TDGFTPYSNNSTSYSCWPVFMMPYNLPPNKCMKEEVMFLALIVPGPKDPVTKINVFMEPLIEELKMLWQGVEAYDSHLKC
CFTLRAAYLWSIHDLLAYGIFSGWCVHGILRCPICMGDSQAYRLEHGKKETFFDVHRRLLPYNHPFRKDTKSFRKGKRVR
DGPPKRQTGENIMRQHRDLKPGVGGRFQGYGKEHNWTHISFIWELPYTKALLLPHNIDLMHQERNVAESIISMCFDFTGQ
TKDNMNARRDLAELCDRPHLELRKNPSGSESRPQAPYCLKRQEREEIFQWLKKLRFPDRYAANIKRAVNLDTGKLVGLKS
HDYHILIERLVPVMFRGYFSPDVWKIFAELSYFYKQICAKEISKKLMLRFEKEIVVLVCKMEKVFPPGFFNCMQHLLVHL
PWEALVGGPAQFRWMYSQERELKKLRGMVRNKARVEGCIAEAFAAREITLFSSKYFSDTNNVNAQTTRYHVAEQAPITDL
SAFKWDGKGVGAYTSHLVGTIERNKTLLFLYVNMPELHPYFQIFDSIYKPNKQLTQKQLDDLRLKGLHGGPSFVQWFHEH
VISSLPIFFSNLSSDVT
>TGRP1_136-915#Unknown [Toxoplasma gondii]
SLHGLTSESKYEIGTLILAHCRFLSTSSHAGKPPANPHSEDFSPGPLSTTPHDLIPPRNLWCRQTQHVGSSCQSAEDLLE
VAAPQTKHGHAAGQCLRCHLTTPPRGHSISSRLGASWCRSCLETQNHAASPFLFLPPGSEQNAQQSRRQTAQRHTTNNFS
PIRAGTRRNSYGKKAGPCGAATRHKRRIPKRVNSDRSLPQLDWPTHPTPDTHSLQDSDNTSSRCGNKLSFLHGVVFASED
KRCYIALPYTPFLYTVATA
>Candystripe1_SB_17651-18904#Unknown [Sorghum bicolor]
EEKRSDVDTDAIKEEIRGEVLRDVIAMLRAQGVNLPDLPSNTNLPDLPSNTNLPDLPSNTNLPDLPSNTLPSMGAKDNSF
ASGADAVCNNVQLDGPGGNGNSYPNPVDLLTEPTYCTLVSNSGGYPVEVAKGQVFPNRTVLHSVPIQDGYVVVLVDFVHP
GHESFVLTPPPNDEITTLGEALFTWIQWSKSGIVISPKEAPSKSSLEPTWPGRSAKVTLKDLACKVSSSHDEKYESAPIV
GKCASKELAEGKKKTNNSTHGPAVSVASSRAHKSKNTKRDQQVGGKQQQQAEPTKSSRSTPEDSLLIRPNSKFNFGQPML
SEEEILQAGPKCAELHIYYMNACAMGRNIGIIGRVKSHFFLLDGQYVPLTVGFEDVFDLLTFDSLDVAILRVITLCVQFL
LF
>Academ-2_CGi_hel#DNA/Academ (reverse strand 190-2202 via genewise with gi|405975516|gb|EKC40075.1|, 3 introns (464:736, 894:1255, 1729:1789) [Crassostrea gigas]
MKKVSELFNVSNVKKEQEQMLEMLLRRQDCIAVLPTGYGKSLPYQMLVPVRREMKTSDMNCKIIVCSPLMALMRDQCERL
NSIPGIRAVYKGGSQDNELIQSGDFDYLFASPEYLVGDKTFRAKIQTFDVSTIVVDEFHTISTWGEEEGKQAFRKWFSHI
GELRSLFPKASVLALSATCTKKISRRVSKILQLGTDTTEIRISPNRDNIKVVVKKIPNTTEMAMVWIIDALSDGTLPRTI
LYCTSIKDASNIYSYIITELPQCSEVQMFHSETPEDVKNKILQDLLDEKSATKLVIATSALGMGVDIRQYYSVILYGAPK
SIVDTVQEIGRVGRDGKDSVALLLFNSYHLRTVDTEVKDVFTSKDCRRVSMLEPFLSEGELIKEKSRTISHSCCDLCADR
CDCGTCDLTPIEKLFMVDTVEFSDLSSSDTEPYNYDEID
>GB:AAC33318 pol polyprotein (gypsy_Ty3-element) [Drosophila virilis]
MKIVLLKNLKIIMFREIQITIVGTWEIISKMLTQPPFQVVIPTRIRVITHKINSIISPKTIRKLTTSFQQKLSQGRYQNP
LNYQISPIHAECTKPSRLTSRDSNSGQIRIWDNIGKFLFSKPREPNRNKSIHKNWIMELTKFLKCVIDTGSTINLMKTNR
LNFPVYNETLKVHTINGVIELKQSIRLGASKICPSKQKFYIHDFSEHYDVLIGREYLEACQAKIDYAQGSVTLGEFNFCF
RYNDEEVEEDMTAQECLDPPSTEDRPFNFAINNELIENNEFRLEHLNSEEKEKIKKVLHEFVISSYHEGDNLTFTSYNLN
TKFLTKHEDPIYKRSHTNILQLSNEEVIPFSDLIKPIPNGLPVIIVPKRNDAFGKPKFRLVIDYRHFNELTINDKYPIPI
MDEILDKLGKCQYFTTIDLAKGFHQIQMDPGSIPKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIFKDCLVH
LDDIIIFSTSLEEHILSLQKVFKKLREANLKLQLDKCEFMRKETEFLGHIITTEGIKPNPNKIQAIVKFPIPKTPKEIKS
FLGLCGFYRKFIPNFANIVKPLTLKLKGSKINIKDRDYELAFEKLKVLITSDPILIYPNFEKPFSLTTDASNMAIGAVLS
QEHKPICYASRTLNEHELNYSTIEKELLAIVWATKYFRSYLFGRQFQILSDHRPLVWLNNMKEPNMKLQRWKIKLNEFDF
QIKYVPGKENYVADALSRIQLNENFLGEDTISTRATIHSAQEDNSNHLQITERPLNYYNRQIEFEKGTENETKVTNYFHK
TNIKITYKDMTNTHAKELIKEYLCTKKSVLYFHNEADFPIFQEAYLEIISPNNSTKAMKTSTKLIDLQTYAEFKELILKK
HKELLHPGIEKTINWFKETHYFPDYQNLINECETCNIAKTEHRDTKLTFEITPEIANIREKYVMDFYIVGDKQFLSCIDI
YSKFASLIEIKSRDWLETKRAILQVFNQMGKPIEIKADKDSAFMCTALQLWLKSEAVNINITTSKNGISDVERFHKTVNE
KLRIINSDSDVENKLTKFETILYTYNHKTKHKTTNRTPADIFIYAGTPEYDTQANKEKLINNLNKKRTNYEIDTRYKHSP
LVKSKTTTPFKKTGELRQIDDKHFEETNRGRKITHYKTKFKKKKKTNQSKYNNYRSTTDSDQNIQAPA
>GB:AAC82603 Prgag (gypsy) [Drosophila melanogaster]GB:AAC82603 Prgag (gypsy) [Drosophila melanogaster]GB:AAA70218 unknown protein (orf 1) (Gypsy_Ty3-element) [Drosophila melanogaster]
MSWAHNYRKVKVEYESEDSWEEEQVGQALGRPLDSATVDITMDPNQIQALIDNAVRQALSQQQSQFQTQLNSLAARVQSL
QVEAPQIKIYEKVSVNPDVRCDIPLDIIKSVPEFSGTQDEYVAWRQSAIYAYELFKPYNGSSAHYQAVAILRNKIRGAAG
ALLVSHNTVLNFDAILARLDCTYSDKTSLRLLRQGLEMVRQGDLPLMQYYDEVEKKLTLVTNKIVMTHEQEGADLLNAEV
RADALHAFISGLKKALRAVVFPAQPKDLPSALALAREAEASIERSMFANSYAKAVEERAHSGANGKSRFQGKPNKEEQGQ
DRNPHFTKRPKNNGQTNKDTQAQAPQPMEVDSSSRFRQRTEHYQNHPNESNAFKRRNSSERSTGPRRQRLNNVVQEAPKQ
KDPKEEYEKTAKAAVEEIDSENEYAPSDDSLNFLGGAPGCRSLNDGWLGEP
>Helitron-9_DRh#RC/Helitron 94-4989 via genewise with Helitron-2_DVir, 2 introns (300:356, 498:661), 6 frameshifts, 1 stopcodon [] [Drosophila rhopaloa]
MPRLRKTSAEQRRxAINNRSQAFYxDNLNEVRSRNSQRLAEAREADTQxREEERSQDAQAHSLRRRNRSPTHRESERETD
AARYALMRSSEEYRLLAQERNTREHAIRREDPTYREESEREEDAVRHALMRSLMDQERNTREHAIRREDPSYRESEREMD
AGXHALMRSFxxYRIMxQERNTREHAIRREDxSYRESExGMDAARHAxMRxFEDYRIMEQERNTREQTIRRQSPCYRxDY
RQRDAEYHRTARSDHARRSQQQRINSSQRRMTRQQTRIMVEQVRQMNEARVINYRSNSQNRAVESQRQSQRNIDARARLS
PEDXEQIEQRELQGQIRRSGARNTYLNNIKMGPSKICTSCGGHGFPFRLKRLxKGIIVSKYPQLDVSKAFYLSEKFSNSS
DRYFFCNTCHARISKGKIPNLCLSEGFDLPEVPPCLKDLTCLEERLISPRIPFMRIVSLGYERQCAVRGAVINIPVSVSE
TVTALPRTFENTHVVQVHLKRKLEYRHSFMTETIRPGKVMEAMRYLVSTELYQKHNVFVSQNWLDEFRGNNEVAFIADNR
DLPIVEALLNEQMEVNPAPQISSDXDNLNPGGQETLLENDPVENQIXIIAMAPGEGRRPVDMTTDEDAEELSFPTISCGE
IFKCKTTXRKVKSQIRFYDRRCAKVPKxVYXYKRYELTRxKDAISICLRKKSGNSHVTASNMMDETFVNGxIQHNDGYHL
LKGLRSSPAHWEAEKKKVLAMIRQFGLPAFFTTLSAAETKWNELxVNLCQILDKRTITEEEAGNLSSSEKARLIRSDPVT
CXRYFDYRLRQLMKLFKSNIFEEFNSTHFYWRIEFQHRGSPHSHGMYWLQNAPKIQSDIGPGNLEEVIAFIDRFISTNGD
NVDLQDIIKYQLHRHTVTCKREFNRDGKCRFNMPFPPMPETKILYPFSDDERITDRQKTTWRKMQDLLDDKRNVTDVEAQ
HLNHFENILNKLEVNYEEYILAIRSTLKKPQIFLRRKFSDRMLNAYNEDILKLHRANMDIQYILDVYGCCSYIINYINKS
NRGVSILLREAMEEITEGGHRDRSVKEKLQHLGNKFINGTEISAQEAVYNILGLHLSETSNGSKFINTSLPEQRVRMVKS
KKELERLPSDSTDIYVAGLNDYYTLRPESMEQVCLADFVALYDRKVRKTRNEEDEYAEHEEEDEEENIAAENLIMLNNSG
TLKKRSKPYILRWRRFSKNSSRSDYYRELVMLFYPWRNEQMDILEKNNEETYNLNKVLIETNRKNYDKISEEDFEEIIRE
IQQNNNDDLEDNDILASQLLDDEFRGFAIPEVERNPNVFQENSTDPSSDEDGPRVLKLPPLIPVDDVCSLVRSLNSKQRQ
YYAHLMHNMNQKNIFYEFIGGGAGVGKSRLISTIYQSLMLRFNTLAGSNPDSAKVLLCAPTGKAAFGIKGHTLHSLFSLP
VNQSSAGLKPLSADTLNTTYSKLMDVKLIIIDEISMVGTRVLSYLDCRLKQIYRTNQYFGGISIIVFGDLKQLQPVGDKW
IFKPNTRDVYSAIIGTPLWDLFKFFELTEIMRQREDCDFA
>Helitron-1_Gav_1p#RC/Helitron 336..2438[Crocodylidae]
MGRKCLAERKRCHNKERQQRWRQSHTLEQSAERXQLDASRKRRARDNESEDQATRRRQLDSQQHRESRANXSRAEATVRR
QLDAQRHQERRANESXEKGAMRRXLDATRHQESRATESQEHAAVRRQLDSVRSARTRQRRFXIRDSHFLRESEVERHYCG
KMDVVCQFCHSLNFAAEQPSDGKFXNCRHKGKVRLPYRHEFPPLLKEVMSNPQHMFYENFQTNIRSFNSSLSFASLGAKI
VPVPGQGPYCFHVHGQFYHPTPHLQPREGDARSYGQLYILDPNEAVEERLNHPQNRQCDPALMQDLDALLRNINPFSTSY
KMLGEVVREEEQRAAEENRSIANVSTVFRHDRESDRRYNLPNNDEIAMIFRNDDGEPPFHRDIRIYSRSQGFENISILNA
NLDPMTYVLFYPYGEPGWHPALQLPGYETSTSKKVSMLQFKVAQTAVRRNEFNPILRGGKLTQQWIVDSHLQVEANNLNY
IRQQQGKLRVAQYSGLMDFLTETAETSGTQVGKTVILPSSFQGGPRNTRERYHDAMAIVSKYGHPDLFITFTANPKWPAI
QENLFPGQNPSDRPDLVARVFKIKLASLLDDVIKHKIFGPVIAHAYTIEFQKRGLPHAHMLFILENKLDTQAAIDRTVSA
EIPDPDTDPILCDIVKKYMIHGPCGTFNSNSPCMSEGKCTKNFPKPFQQETVANVNVYKRI
>Helitron-1_DPe#RC/Helitron 175-6678 [Drosophila persimilis]
MPRRLSASQQSQRRKLRNRSNRDRNLGNLENIEFIENRELVIDAHPXFVEPVRNQELETEGPNQETAWQVSGVGQEEQAA
VPGXQVENAAGDSDGINAQNKRQVSVRQSVRLRNQHVENIEERVELRTRQGQVANTERRFKRRRSQRYRATEQAQNTAEH
VLRRTDSRIRREEQVADTVRRSRRRQDSXYRAREQEQNXXEHIVRRTDAQIRHEEQVADTVRRSRRRQDPDYRTREQEQN
TVEHIVRRTDARIRHEEQVADTVRRSRXRQDPDYRAREQEQNXVEHIVRXTDAQIRHEEQVADTVRRSRRRQDSDYRTRE
QERNTERRQRVRLNNERRRMLEREQDRVRRVQERSLVDRRRISRARDTLARQAARAAARQLEIDAARXASQRVSQYRSDS
SNRVEQNLRNASRMQQERANISQEDRAQIEPRIRLSGLEALKVVYNRNVKLGPDQVCLSCKGLWFPKQICKIPRVLLESD
CEFSGEIFALESLLEFPSDCPTLKFCRTCHSNIKKRIKPKLFFNELDFPTLPDCLKGLTPLEERLISPRLPFMIIKPILP
GGRGQNAIKGAVVNVPISVSDIVKELPRAFHEAQVIQLHLKRRKEYLHAFMAETIRPSKIFEALRYLVTTDLYKKHNVVV
NEQWISGFTSDIVPFVASQADAAFLESMQNRDRNVDTEPAHPDEEVEAEELNPGGQETLLENNIPFDDRIIKIAPGQGQR
PLDMILDIDSEELSFPXIYAGVKRQSSQSFTTIVRSELRNVDRRGCRTDKLFFNYKKLELIKIRNNISICLRKRSTSSAV
TAANALNENFIGGLINHDEGYRVLRDIRSSPAHWEDEKKKVMAMIRQFGLPTFFITLSAAETRWPELLVLLKKNVDREII
SEEEAMNLPYTEKERLIRADPVTCARYFDYRYREILKVMRNREGIFGENFVIKYYWRVEFQQRGSPHIHGMFWLKDAPAV
DLTSTESISTVIAFINKHITVDVTDSELAPYVEYQKHRHKDMSCLKKANKSGKKVCRFGIPYPPMPQTEILSPLPEETPN
LDFHQGNFKKIQDLLNSDQSSDMIDHLSIFENFLSHEQVSLNYEDYKYAISSGLKKPHIFLKRSFAEICVNAYNKHIISM
QRANMDIQYILDPYACCSYIINYINKTQRGISKLMREAAKEVQGGNYTXRQKLQHIGHKFISGTEISAQEAVYCCLGIPL
SGTSNKCVQVNTFPPEQRVRMLKSTSILQNMHQESTDIFVKGLLERYEQRPTDLEGLCLADFAANYEFSKSGKRTCQNRD
DEEDEENEAQVEVFIPLRDNSGFIRERTKPSILKYMRFNINTDRSNYFRALAMLFYPWRDEEKDLVSVNCEDLYNNHQEL
VNSNFQKFNALGDLEDALRRAMEAEENREEGEEVVDEAIAEEFRALAIPEISSQINVLNLNDQAADQDRSIRLIKLPPIV
SLNILANLIRSLNLKQKTYLTHVLHNVRNKAVFYEFVGGGAGVGKSRTISTIFQTISQEFNRRPGSNPETVKVLLCAPTG
KAAFGIGGATLHSMFSLPLNQSNHAFKQLGPDLLNTLRSRFIDLKILIIDEISMVGEKMFSYLDMRLKQIFSRPESPFGG
ISVIVFGDLRQLCPVGDRWIFKSSSGAHNPYSAIVGSSLWDGFKFFELTEIMRQRDDQPFATALNNMASAVMTSEDIQLL
RDRIVHGSEAPRDAIHLFYSNSETDKYNKEKLSSIMTAEYTSIALDSIKAEHLNPDIKTKYLDSVKSFKTSNTQGLCTSL
VLKTTAKYMMTVNVDTSDGLVNGATGVLMQIDLSSSNTPELLWIHFLEESVGVNARSKRSHSNESSWTPVQKTTKSFQYH
QNEQVTIDRKQFPIVAAEAITIHKSQGATYSKVVVHTSSNMQREALYVACSRATSANGLYIVGPLIPSRPKRDCPVAKEM
ENLRSAKLLHTHFDCLLNPSELNIFFHNTESLHCHFIDVCSDQLMLKSSILCFVEASTYSNEAYNIPGFSTAVRLDCQSV
ASGARPKRGILIFVRNELLNHCSIIESNRYYADSGNLASPVFEYALFKYKSVGFIVIYRTPTYPLRKFEAEFEVLFQRHP
FLDRNSVVLGDFNLCLRSLSGCCKKIYEFLSERNCRSLLDLNSSTTNCDTHIDWAFSNISDSRATARTFETIYSYHSGIL
VNVREAED
>Helitron-1_NV_p2#RC/Helitron 7928-8980 Faint, perhaps spurious match to Urukhai_Cis#RC/Helitron [Nematostella vectensis]
MTKISSILSDVQLEGFVHSLSPVKHAKKNRKPYFDCLVQTGEAEKVRAVCYDPQLRKNLLEPYQNKSPIKITATKRMAST
STSEEFRMTKKSKITSAAPEFSYNSQVVSSIVTVQEALSAPEYKAVDIVAKVVTKNHENQLIIKQGQQLKKSDCIIGDEH
STIKLTLWEDLIDRVECGKTYTFKNVRIRVFDDVKYLSTNTSTSIEPADRQIHDINLTSEQFAENIIEGRFIGANVKAAN
SCVVCNTTLNQDDSEDDMITCPLPTCQTTMLFSECQTKLVCNLTVKKTDGKMQMYTCFNDGLQSFLISINKGDTRIDDLS
PKELNKLFLTAGTKQLIVDNSTSVIHQVLF
>Helitron-7_NVi_hel#RC/Helitron 25-3800 via tfasty with Helitron-1_HM, 6 frameshifts and 5 stopcodons. [Nasonia vitripennis]
MPLEICGQLYIYDDITSVEKRLKKNEKLTKDHIEILTTLIPDNPYAKNFRCLNQLANIQNLPNYRLYFVRKNDKQKHRYN
KPLTAECGAIIVSKSVIPDDYDLCIYPKAKTILIKIYLSKLSHHVDPMVFPLMFPSGDLGWSIGYNKKPNSESNKIYDID
NLLLNINRSKNNKRNLENLTLLQYYSYRLSYRPKIKHFSPLLYSGRLTQQYFIHALVMVESNRMNFFRNNQKQLRIECYQ
GLFDHVFNSASNISQNLKKKRKIGxFILPATYIGSPRYMQQHYQDAMAITRAKSRPDLLITMTCNPKWKELKMVLKNFPS
GTTPNDIPNITVRLFYAKFNSFLNDTLKNKIFGEVLAYVYIIEFQKRGLPHAHIVVTLHPNNKIMTPESINKYISAEIPD
NSNKDLQKLVIKHMLHGPHTDTSPCLKKNKKSNTTCIKNFPKEFCYHTTFKVNGYPLYRRLxYIxKSHVFNKKVxANYSV
DNRMVVPYNSFLLQKYKCHINVEYCASIQSIKYIFDYIHKGGDRANIxKIDDNENNEPDTIVFDEITQFIDGRYLSGMEV
AWRLQEFPLCGRSHTVTRLAVHTKDQQKIIFEEHKESEALRNAETTLTAWFKLKKTDDFAKNITYVEIPQYYRFDQKTKS
WIKRSRNYKYSAIRRLNVVYPKDSERFFLKLILNRMKGATSFEDLRTYDNKLYQSYKEAALAMGLVADDSCVYNIFEEAC
QIMLPFQLRKFFAWFILAENIQGNTIWNMFKNFFTEDFKENKENNALSHIQSILETEERCCKDFSLPEPANLIVNDDMSS
ENIMQSATIFKQMVNQLNEDQHSIFTEIINSKTNIYFIDGPGGSGKTFLYKTLIHYFISLNKQVLSMAWTGIASILLPKG
MTSHRTFKLPLDLDNVDTAFLKLESDKKKLRLADLIIWDEASMIPKKALEIIDRTLQDVCYNKLPFGGKLIVLGGDFRQI
LPVMKHGYRNSIVEETIKYSKLWPLVQSFKIKKNIRSNDREFSSLLLDIGEGKINPFRIPQLWKTNDVCDKIYSNINQNI
SINSVILAPHNEDIKIINNKVLKLLYGDSWTYYSIDYATHKGVDQTDENIHLNYPIEMLNEIREGLPPHKLDLKINSTVM
LIRNLSIIDGLCNGTRLKIVKLYQYNIEAEIITGENIGNKVFIPRITLNTGENSSFPFTLYRKQFPIILAFAITINKSQG
QSFDSLGIFLRRPLFSHGQLYVALSRCKNPNKIFIQNELEDSSKIDNIVWSEIFKDAI
>Helitron-2_AMi_1p#RC/Helitron 179..1657[Crocodylidae]
MPCSFLEDIPTQRLSNALAEELYYNRQEQRQIAQDSLPCMLPAQRQMVDAILKAVENQEPLCAFVDAPGGTGKTFCFNTI
LSAVRGEGKIALAVASSGIAATMLTGGRTVHSRFKVPLNVLKTSTCSISAQSDLAELIREAAIIIWDEAPMAHRYMLEAV
ERTLRDLLQSNLPFGGKVIVLGGDFRQILPVVKNASRPQIVEACLKRSELWNHFQIFQLRENMRIRKGGFDARSAKYAQW
LLDLGNGQVPNIDEIITLPPELCMPLDLSAMIEWTFPNLLDNYQNPGWTSERAILAPHYSVVQEINNAIVAKFPGQEWIC
TSADALSEDESVMAVPTEYLNSMEVSGLPPHQLHLKPGMLIMLLRNLAPKDGLCNGTRLLVQSVINSRLLEAKIVGSERT
VLIPRIALKPSDDTFPFTWTRRQFPVQVAFSMTINKAQGQTLKRVGVFLRDPVFTHGQLYVAASRISHPENIRFAVTADL
SNKTRNVVYTEVL
>GB:AAA35339 (Gypsy_Ty3-element) Tf1 protein
MKNSSQKRIRMDGNGGYCTQDDISDILKHFVNQTTRHVETYRKGMDMEEFIVKLRTFFGEHSDRYSTEQSKRLYAIERLE
SRDQNYANKIFCQDSSLTWDELLRRMVNLVGSDEEERLTKTFLKLKNDKDKVLFIKKVLYEDNLSEKRVRLYLLWMLPPY
LIKQRGDSYWDMDKNIDKIFNFVPDKGETIIERYTKPRNLLKTKTGSNWKNNKFLKENDTKDRKPKKTNVSRIEYSSENF
TKYKKRRYEMVLQAKLPEFKCSIPCLIDTGAQVNVITEETVRAHKLPTRPWLQSVIYGGVYPTKINRKTTKLIINLNGIS
IKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITADTNTEKLPKPIKGLEFE
VELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP
LIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVC
YMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELR
QFLGSVNYLRKFIPKTSQLTHPLNKLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVL
SQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLAR
WQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDK
RVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNTILRRFTWKGLRKQIQEYVQNCHTCQIN
KSRNHKPYGPLHPIPPPERPWESLSMDFITALPESSGYNALLVVVDRFSKMAILLPCTKSITAEQTARMFDQRVIAYFGN
PKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIH
SATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQETEEFQPGDLVMVKRT
KTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFPSTFHVSHLEKYRHNSELNYTTIDDSDIGTILHILEHK
NREQVLYLNVKYISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNLNI
>GB:AAA28508 reverse transcriptase (LINE-element) [Drosophila melanogaster]
MATLRIATWNANGVSQRKLELAQFLHEKHIDVMLLSETHLTSKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNRMKHHFY
KEFAENHLQATSINIQLDDNTLLTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVNPKGKQLYKT
IIKATNKLDHVSPGSPTYWPSDLNKLPDLIDFAVTKNISRSLVKAECLPDLSSDHSPVLIHLRRYAENVKPPTRLTSSKT
NWLRYKKYISSHIELSPKLNTESDIESCTCALQSILTAAALTATPKITNNTINSKKTNVQIEQLVHVKRRLRREWQSSRS
PTAKQKLKVATRKLANALKQEEDDDQRRYIEQLTPTGTKQKSLWRAHSTLRPPTETVLPIKNSSGGWARSDEDRANTFAA
HLQNVFTPNQATSTFALPSYPVNRHQQHTPIVFRPKEITKIIKDNLSPKKSPGYDLITPEMIIQLPHSAVRYITKLFNAI
TKLGYFPQRWKMMKIIMIPKPGKNHTVASSYRPISLLSCISKLFEKCLLIRLNQHQTYHNIIPAHQFGFRESHGTIEQVN
RITTEIRTAFEYREYCTAVFLDVSQAFDKVWLDGLMFKIKISLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQ
GSVLGPTLYLIYTADIPTNSRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIKKWLSDWRIKVNEQKCKHVTFTLNRQ
DCPPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEAKKTQLKLKANNLHWLINSGSPLSLDHKVLLYNSILKPIWTYGS
QLWGNASNSNIDIIQRAQSKILRTITGAPWYVRSENIQRDLNIPSVTNAITELKEKYL
>GB:CAA72989 open reading frame 1 (Ty1_Copia-element) [Brassica oleracea]
MVIPPESMDPNQSPLFMHNADHPGLQLISLKLDGSNYDDWNAAMKIALDAKNKIGFVDGTLTRPDTSDPTFRLWSRCNSM
VKSWLLNSVSPQIYRSILRLNDAADIWRDLHGRFHMTNLPRTFNLTQEIQDLKQGSMSLSDYYTTLKTLWDNLESVDEPD
TPCVCGNAEKLQKKVDRAKIVKFLAGLNDSYAIIRRQIIMKKVLPSLVEVYNILDQDDSQKGFSTAITPAAFNVSENVPP
PMAEAGICYVQTGPNKGRPICSFCNRVGHIAERCYKKHGFPPGFVSKYKSQSSGDRLQKPKQVAAQVSFSPPNSGQSPMT
MDHLVGNHSKEQLQQFIALFSSQLPNVTMGSNEASSSKQPMDNSGISFNPTTLVFIGLLTVSRHTLANETWIIDSGATHH
VCHDRSMYTSIDITTTSNVNLPNGMIVKISGVGIVQLNEHITLHNVLYIPEFRLNLLSISSLTSDIGSQVIFDVSSCAIQ
DPTKGWTIGQGRRVANLYVLDVKSSPMKINAVVDISLWHKRLGHPSYTRLDKISEALGTTKHKNKGDAHCHVCHLAKQKK
LSYSSQNHICTASFQLLHVDVWGPFSVETLEGYKYFLTIVDDHSRATWIYLLQSKSDVLHIFPTFVNQIETQYNTKIKSV
RRDNAPELSFTELFKEKGIVSYHSCPETLEQNSVLERKHQHLLNVARALMFQSQVPLQYWGDCVLTAAFLINRTPSPLLA
NKSPYEVLMGKAPQYDQLRTFGCLCYGSTSPKQRHKFMPRSRACVFLGYPSGYKGYKLLDLESNKIYISRNVTFHEDIFP
MAKHQKMDESSLHFFPPKVTVPSAPSPNISSSPFSTLSPQISKRQRTVPAHLKDFHCYSVHDSAYPISSTLSYSQISSHH
LAYINSITNIPIPQSYAEVRQSKEWTESADKELDAMEENDTWDVVPLPKGKKAIGCRWVHTLKFNADGTLERRKSRLVGK
GYTQKEGLDYIETFSPVAKMATVKLLLKVGASKKWFLHQLDISNAFLNGELDEEIYMKLPEGYAERKGDLPPNAVCKLKK
SIYGLKQASRQWFKKFSTSLFQLGFQKAHGDHTLFVRQTENDFVAVLVYVDDIVIASTDDAVAVKLKSDLKSFFKLRDLG
SLKYFFGFGNL
>GB:AAA29365 ORF2 (LINE-element) [Anopheles gambiae]
ATANVLVRPNDVPGPESSAGEPGHGRDAQNLVLQAAREEKADVLILSDVLRPPENNGRWAFSSCKAVAVVAVGELPIQRV
WCSEAQGLVAAQIGGVVFISCYAPPSLNLAEFERFLEAIELEGFSHPQVVVAGDFNARHEEWGSPRTCDRGEELHGMVEQ
LGLIVINQGREYTFVGNGVALPSIVDVAFASPSIARPDTWVVSTSYTASDHRYVLYTVGGTPPSPEQLQNHQQTAQQSSQ
QQQQQQQQQSLQQQQLSQQQQQQRQRQPSSQQGDSSSQRRVRHAGRRWKASQFSPSSFLEALFAADFVQRASTQEGMIAA
MLKACDETMQRVTRLHQDPHRNIFWWSPLLARLRNNCEVARDRMLQTADLEERSIAAAEHRTARAELSRAIRASKRNLFQ
ELIEIAEENAFGAGYRVVMSRLRGSRTPSEADRVVLERIISDLFPEHPPCDWSQLSNVGSVEGATTTAGIAPVTDDELLL
IASQMANHKAPGLDGIPNAAVKTAIMLFPESSGFLYQDCLNRASFPAQWKRQRLVLLPKQGKPPGESSSYRPLCMLDALG
KVLERLILNRLNEHLEEPSSPRLSDRQFGFRRGRSTVSAIQRVVEAGRTAMSFRRTNGRDNRFLLVVALDVKNAFNTANW
QSIASRLQAKGVPVGLQRMLRSYFEDRVLYFDTSEGPVVRHVTAGVPQGSILGPTLWNIMYDGVLDVPLPPDVEVIGYAD
DLALLVPATTTDEVRARAEEAVDQVQRWMQQHGLELAPAKTEAVLISSKKTPPQVTFRVGDVEVQSSRSIRYLGVQLQDH
LKWRDHVTKVSEKASRVVAAVTRLMQNHSGPRTAKSRLLAYVAESVLRYAAPVWAEATQVRECRRMLQRVQRKAAIRVAR
AFRTVRYETATLLAGLVPICHLINEDARVHQQLLAPDRAATREDIRATERQNTIDCWQEEWDADALQQDASRHTRWTHRV
IPSVGDWQSRKHGDMTFHLAQVLSGHGFFRDYLCHNGFTSSPDCQLCVGVPETADDAFFECPRFAAVRQELLGEGGPDPV
CPDTLQRHLLRDADSWSRICEGAKRITAQLQRAWDEERAALAVNVIERQDEDAAELEAQRAEVRRARNERRNANRRAATA
RRREERRAGLPPTPPASPRTAQRRAALRERQARFRERRRNRRLLGMSGQAINNDDDGRERADLAAGPSGMRNRAIDEENE
ATDGGLNAAEEAAVVEAEVASR
>GB:AAC16612 transposase (Mariner_Tc1-element) [Drosophila simulans]
MSSFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL
LDEDGAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWI
FFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNTARYQQQLINLNRALQRKRPEYQKR
QHKVIFLHDNAPSHTARAFRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDE
FYWRGIHKLPERWEKCVASDGKYFE
>GB:CAA50801 mariner-1 protein (Mariner_Tc1-element) [Girardia tigrina]
MEISEIRILMKYEFHRGATTRQAVGNINSVYPTQAVTQTTVAHWFKRFRSGDFDMSNQPRSRPEIKVDNDALKADVEADS
SQSALELASKFGVAKSIILIHLKQINKVKKLDKWVPHELKDEHKQQRLDACLSLLSRNKADPFLHRIVTCDEKWIMYDNR
KRSSQWLDPDEPPKHCPKRKVHQKKLMVTVWWSSYGVIHYDFMVPGTSITSDVYCSQLDDMMEKLAIKQPKMFNRLTPIL
LHDNARPHSAKNTVAKLQQLGLETLRHPPYSPDLAPTDYHFFQSLDNFLSGKNFTSSGAVKTAFQEFIDSRESVFYTKGL
NVLPLKWQQCVDNMGGYFD
>GB:AAB51275 reverse transcriptase, gag, polyprotein (Ty1_Copia-element) [Volvox carteri f. nagariensis]
MAEQSKRVPKLESIADYPQWEPRARNALILDGYWDVVNSAPITSVEKGLMAKAALIMMVGDKFLQEIDQCATSAAGWAYL
KKIHSENQKGHQLLYDAQIRSLKKGNDERVEDYVKRTIQLRTKLKDSGFDYPENITVKLMLDGLPPSFQHFVQQYTATGS
LDKLTFDGILPLLVTEEARQASEITQERVGALVGRMHATDNVNRQRWQPGTQPTQQEGCWKCGAPDHIKRNCPQLYQNQG
GNPRPHFGGGGRHPNKFGLFAAALSATTEVCGIKGVPQWYIDSACGLHLTGCKEDLDDYVRVDDGPQIQALKGASLKAEG
YGSVKLLTNVDGSEYTLEVEQVWYVPGADFRLISASELDKKGYSMEIRDGQLNLYVTVKVPERMIRFLGVRPYGHRFLNP
LALNKPLVHRMRIATASLVAGGTYLLDATCPKYNRALAVMKDSVELWHRRFGHLGYRGLEQLASEGMVDGLPVTAKQFKE
AARHSIVASHASRATRACIAPIIKSHLDLPLSEFILTCVKMPHFSLGGARYAVRFLDEFSSFSVVRTVNSKDQVAQVVKD
ALLLLENQTGRRVREIVSDRGREYVNVKLRAFFAERGIRHNISAPYTPEQNGRAERLNRTLLEKVRAMLQESGLGNEFWA
EAFRTANAVRNCSPVSNKNATPHELLFGYKPDVSVLRVFGCTAWVYEERQHRTKLDPVSRKGIFVGYDSMDNYRIYLPED
GKVVVSCNVKFDESKGGSVVNVHAKDDGKSVSASSVSDTRKLLEDADQDEDAVGLADDAGDETAEDAGDESAEDAGEQVA
DADAPAGEISNPPVASTSGLRRSTRDRKAPERLIAAAAILSPNPTSFQEAIKSPQADMWWEAMEEEIASLHRLGTWRLEH
PPPDANVVPGRWVYKVKSGADGEVERYKARFVAKGYMQVEGVDYDEVFAPTSNHATVRAFSPKAAAKGIEVHHLDVRTAF
LHGDLDEVVYVDQPEGFVTGERGLKCRLLKALYGLRQASRAWYVKLVNKLREMGYTVSDADPGLFIKCQGTDVVELLIHV
DDLLIGSDSKDLIAQSRRTGEGFDCVIRRGLVLFWDGGMRDKPPGPLKISQKKYAAELVARFDMADAKSAAIPMEPSLVL
RREPVDEELLLDASKFRSLVGGLMYLAVCTRPDIAQAVYKLARFMSKPAVISHWEAAKSVLRYVKSTLAYGIVFCGSQSL
VGYADSDWPSDPDSRRSTGYVFILNGGAISWKSRLQPTVAASSVEAEYMAAASATREAVWLRKLMRDLGYEVRAVEIKDD
SQGAIALIRNPITSERSKHIDVIHHFVREKESSGSVSFQYCPSHDMVADVLTKPLALVKFSKFRECMGVR
>GB:X02417 ORF1 (Ty1_Copia-element) Yeast Ty transposable element Ty-pY109 [Saccharomyces cerevisiae]
MESQQLSNYPHISHGSACASVTSKEVHTNQDPLDVSASKIQEYDKASTKANSQQTTTPASSAVPENPHHASPQPASVPPP
QNGPYPQQCMMTQNQANPSGWSFYGHPSMIPYTPYQMSPMYFPPGPQSQFPQYPSSVGTPLSTPSPESGNTFTDSSSADS
DMTSTKKYVRPPPMLTSPNDFPNWVKTYIKFLQNSNLGGIIPTVNGKPVRQITDDELTFLYNTFQIFAPSQFLPTWVKDI
LSVDYTDIMKILSKSIEKMQSDTQEANDIVTLANLQYNGSTPADAFETKVTNIIDRLNNNGIHINNKVACQLIMRGLSGE
YKFLRYTRHRHLNMTVAELFLDIHAIYEEQQGSRNSKPNYRRNPSDEKNDSRSYTNTTKPKVIARNPQKTNNSKSKTARA
HNVSTSNNSPSTDNDSISKSTTEPIQLNNKHDLHLRPETY
>GB:AAC33526 pol polyprotein (Gypsy_Ty3-element) [Fugu rubripes]
FLPYQHCRPASSHPLAIPSSPLPQSRRGTHADRPVPSLTAGAGAKTPRPVVPVLRKQRPLHPSLPRPTKRACSPVGGVLV
SRAVIPQPTEQHNRLFPATLSWDKESIPVSVLIDSGADESLMDFSLARQAGIPLVPLDRSLSPQAIDGRSLGNITHRTIP
LTLTLSGNHIESTPFLVLHAPTAPLVLGRPWLERHDPHISWASGRILGWSVACHANCLRSAPSPSSNPRPALTPPDLSGV
PPIYNDLAPVFSKDNALSLPPHWPYDCPIDLLPGAPYPTGRLYNLSIPEKEVMRNYITESLASGIIRPSSSPLAAGFFFV
AKEDGGLRPCIDFRKLNNITVKNKYPLPLMSSTFEPLTHARVFTKLDLRNAYHLVQIRKGDEWKTAFNTHLGHFEYLVMP
FGLSNAPAVFQELVNDVLRDMINVFVVVYLDDILIFSRTMEEHHQHVRLVLQRLLENRLFIKAEKCIFHSASVGYLGYIV
EEGRVRADPAKIQAVVEWPRPTDRTQLRRFLGFAGFIRRFIKGFSQVAAPLSALTSTSRPFAWTPEAETAFSALKDRFTT
APVLAHPDPARQFIVEVDASDAGIGAVLSQRSEADQKIHPCAYFSRRFDPAERNYDVGNRELLAVYGALVEWKHWLEGAK
HPFLVWSDHKNLTYVRTAKRLNPRQGRWALFSRFDFTLTFRPGSKNIRADALSRQFPEEFPGAPRDPDTIVPPARVIGVI
SWPIETAVEQAQRDEPYPGNGPQGRMFVPSSVRPQVLEWGHSSCFACHPGVRRTAEFVQRRFWWPNLQEDVREFVGACTV
CARSKASHRSPAGLLHPLPVPSRPWSHVALDFVTGLPVSQGNDTILTIVDRFSKGVHFVALPKLPSAAETAELLVSHVVR
LHGIPLDVVSDRGPQFTSRVWQAFCKGIGATVSLSSGYHPQSNGQAERANQAMEAALRCVTTSNPASWSKFLPWVEYSLN
AMESSATGMSPFQCFLGYQPPLFPQQELEIAVPSTRAHLRRCRRIWKTARKAILRATEQSRRSANRRRRPAPAYRPGQKV
WLLARDLPLQTSQTSSRKLNPRDIGPYTICSIINPSAVHLDLPAALKVHPVFHVSLIKPFSTSPLSPPAPIPPPPQVLSD
GEPVWSVNKLLAVRRRGRGFQYLVDWVGYGPEDQSWVPPSYLADPSLLEDFLPRAPGCSWAVVRCLP
>GB:X02417 ORF2 Yeast Ty transposable element Ty-pY109 [Saccharomyces cerevisiae]
TISTTFILGQKLTESTVNHTNHSDDELPGHLLLDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQ
DNTKTSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTVLAPIVKYGDFYWVSKKYLLPSNISVPTINNVHTS
ESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQWPDCLIGKSTKHRHIKGSRLKYQNSYEPFQY
LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQWTVVLSILSRTLH
KFLEKNGITPCYTTTADSRAHGVAERLNRTLLDELPYSNCKCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGLA
GLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTF
DEDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPR
EVDPNISESNILPSKKRSSGPQISNIESTGSGGMHKLNVPLLRPMSQSNTHESSHASKSKDFRHSDSYSENETNHTKLPI
SSTGGTNNKTVPQISDQETEKRIIHRSPSIDASPPENNSSHNIVPIKTPTTVSEQNTEESIIADLPLPDLPPESPTEFPD
PFKELPPINSHQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIK
PIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGTHKARFVARG
DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDKLIRLKKSLYGLKQ
SERTVRNYQIIPDKTVWYGRSRGWSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDKQIQYD
ILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVG
YKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQPYYSHKLATYI
YLMGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFG
TKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNKWIH
>GB:CAA36616 ORF4 (Ty1_Copia-element) [Solanum tuberosum]
MKNVFLNGHLEEEVYMDPPPGFEGKYKSKICRLRRSLYGLKQSPRAWFERFTQFVKRQGYVQGQADHTMFTRHSLEGKTT
VLIVYVDDIILTGDDVVEIKNLKERLASEFEIKDLGPLKYFLGMEVARSKKGIIVSQRKYVLDLLKETGMSGCRPTETPI
DPNLKFVKEGKLIDKGQYQRLVGKLIYLSHTRPDISFAVSLVIQFMHYPREEHQEAVYRILRYLKSSPGKGLFFKKNEQR
SLEAYTDADWAGSSIDRRSTSGYCTFVWGNLVTWRSKKQNVVARSSAEAEYRSMALGICEILWLKRFLEELRRPVSFPMK
LYCDNKAAISIAHNPVQHDRTKHVEVTDTSLKRRLKMEVCAFLLFQQQNKLQIFSQKVFSELLLSPLLAS
>GB:AAC49502 ORF2 (Ty1_Copia-element) [Zea mays]
MQVYASGGSSWIIDSGCTNHMTGEKKMFTSYVKNKDSQDSIIFGDGNQGKVKGLGKIAISNEHSISNVFLVESLGYNLLS
VSQLCNMGYNCLFTNIDVSVFRRCDGSLAFKGVLDGKLYLVDFAKEEAGLDACLIAKTSMGWLWHRRLAHVGMKNLHKLL
KGEHVIGLTNVQFEKDRPCAACQAGKQVGGSHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVF
FLQEKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMAR
TMLGEFKTPECFWTEAVNTACHAINRVYLHRILKNTSYELLTGNKPNVSYFRVFGSKCYILVKKGRNSKFAPKAVEGFLL
GYDSNTKAYRVFNKSSGLVEVSGDVVFDETNGSPREQVVDCDDVDEEDIPTAAIRTMAIGEVRPQEQDEREQPSPSTMVH
PPTQDDEQVHQQEVCDQGGAQDDHVLEEEAQPAPPTQVRAMIQRDHPVDQILGDISKGVTTRSRLVNFCEHNSFVSSIEP
FRVEEALLDPDWVLAMQEELNNFKRNEVWTLVPRPKQNVVGTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGLDFEETF
APVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWYECLR
DFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGT
FISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKE
CHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEY
VAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLA
DIFTKPLDEKTFCRLRSELNVLDSRNLD
>F28I8/F1O13 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LSSGTIQVSSSPYASPVVLVRKKDGSWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGSVVYSKIDMRAGYHQVRMDPS
DIHKTAFKTHSGHYEYLVMPFGLTNAPATFQSLMNSIFKPFLRKFVLVFFDDILIYSRSTEEHKRHLEAVFALMREHKLF
AKMSKCAFAVPKVEYLGHFI
>F5J5 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSRWGAPVLFVKKKDGSFHLCINYZGLNRVTLKNKYPLPRIDELLDQLRGATCFSKIDLTPGYHQFPIAEA
DVRKTAFRTRYGHFEFVVMPFGLTNAPTALMRLMNSVFQEFLDEFVIIFIDDILVYFKSPEEHEVHLRRVMEKLREQKLF
AKLGKCSFWQREMDFLGHIV
>T32E20-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHMLERLANHP
YYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFS
SCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGRKI
>T5E15-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
APVLFVKKKDGSMRLCIDYRGLNNMTIKDKYPFPRVDELLDQLRRACWFSKIDLSSGYHQISISELYVMKTAFQTRYGQY
EFVVMPFGLTNAPAAFMRLMNEVFHDYLDSFVIIFIDDILVYSRSAEEHREHLWKVLDRLREQRLFAKFSNCKFWQREIG
FLG
>T8M17 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LNAQIIRPSVSPYSSPVLLVKKKDGGWHFCVDYRALNEATIPDRYPIPVIEELLDELKGATVFSKLDLKSAYFQIRMKLS
DVEKTAFKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFRPYLRKFVLVFFDDILVYSHDMKTHLKHLETVLQLLHLHQFY
ANFKKCTFGSTRISYLGHII
>F5K24 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGEPVLFVKKKDWSFRLCIDYRGLNQVTMKKKYPLPRINELLDQLRGATCFSKIDFTSGYHQIPIAEA
YVRKTAFKTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLMRVMEKLWEQKLF
AKLSKCSFWQREMGFLGHI
>F17L24 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNRVTVKNKYPLPRIDELLDQLRGATCFSQIDLTSGYHQIPIAEA
DIRKTTFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEEHLRRVMEKLREQKLF
AKLSKCSFWQRKMGFLGHIV
>F28I8 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEA
DVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLF
AKLSKCSFWQREIGFLGHIV
>T29A4-3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWEAPVLFVTKKDGSFRLCIDYRGLNRVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEA
DVRKTSFRTRYGHFEFVVMPKGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEEHLRRVMEKLREQKLF
AKLSKCSFWQREMGFLGHIV
>F11I2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGAPVLFVKKKDGNFRLCIDYRGLNRVTVKNKYPLPRIDELLDZLRGATCFSKIDLTSGYHQIPIAEA
DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNNVFHEFLDGFLIIFIDDIMVYSKSPEEHEVHLRRVMEKLREQKLF
AKLSKCSFWQREMGFLGHIV
>F3H7 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEA
DVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLF
AKLSKCSFWQREMGFLGHIV
>gi|15232813|ref|NP_189784.1| TNP1-related protein [Arabidopsis thaliana] (CACTA-element)
MERQKKKLKTSMKRQKKKLKTSMERHKKKLMKTSMERQKTKLKTLMERQKTKLKVQAAEEPEGELELSGDEDVVQPKTKR
QRGPTRMKDIAKGPNARVRVEYTMMGEPIGKGSVKLASYAGALVREHVPITIDHWTKIGEEIRTLLWKSIQARFELDEEY
QKVAVLKQMGCLWRSWKSRQVTKFREAKTNQQGMNLRPKNVSPFEWRKFVKSKTSPEFKVISDSYKERRRNQLPHTCSRR
GMVRLAEDMVILCAYPTEVMRLKVWVKSRTKKDGTPVNTNAAEKINLASDCVDWFVIVCDGLRKKAAKIVSSGPQSNGTN
EAQDSLSQLLGPDNPGRLRAMGRNMNKTKLACFQVKSKCMAEMQQKQDQLQQKVNELQEVIDKIKNHRQSAEVGETSAAR
SVNQGSQPKCILMDWAGTDATVAEGCIISSDPDEIVNGSRLGPTDVKVLIDTAVVPEAYLWRPAVNMEIMEKVVGQMIAW
LVAMCVSLEEKLNPDDIAQGPRPTYGNKCKLLDLSYNDVIVAEGRWQTKDQSALVNGLPLGPAAVKVFVDVILQPETFIW
RPTMDVTYLEDCLQSFVAWPAHKVSYENTTDSAVQKAPLQSSQSTYPTASASKGKSAAASQQNGATEKSLGEKQQNGATK
GKSGHNSSIQVSAAKGSESAGTIAKSLGEKQPTVVPKSPVKKTQLASQTPLRRSPRQKISEGLKANQKCKLMDISGKKRV
VGAGRVHSIDPDQKVHHVHLGENAARVWVDVVNVDDAAVWRPSDEIEYMRDSLGSSIAWPKDKLVTY
>gi|41016738|dbj|BAD07480.1|  (piggyBac) piggyBac transposase [Bombyx mori]
TEYECWNIFVTSDMLQEILTHTNSSIRHRQTKTAAENSSAETSFYMQETTLCELKALIALLYLAGLIKSNRQSLKDLWRT
DGTGVDIFRTTMSLQRFQFLQNNIRFDDKSTRDERKQTDNMAAFRSIFDQFVQCCQNAYSPSEFLTIDEMLLSFRGRCLF
RVYIPNKPAKYGIKILALVDAKNFDVVNLEVYAGKQPSGPYAVSNRPFEVVERLIQPVARSHRNVTFDNWFTGYELMLHL
LNEYRLTSVGTVRKNKRQIPESFIRTDRQPNSSVFGFQKDITLVSYAPKKNKVVVVMSTMHHDNSIDESTGEKQKPEMIT
FYNSTKAGVDVVDELSANYNVSRNSKRWPMTLFYGVLNMAAINACIIYRANKNVTIKRTEFIRSLGLSMIY
>gi|68437219|ref|XP_699416.1| (piggyBac) piggyBac transposase [Danio rerio]
DIKSTFELFFPDEIKEMLMQISNLEGKRVYGAAWKDLDWTDLQAFIGILILIGVYRSKHESVDSLWDGVLGRPIFRATMA
LYTFKSWSRVICFRKRDPEPGQKSGDKLAPILNVWDKWVERLPLMYNPGQNLTVDKCLVPFRGRCPFKIYMQCKPAKYGI
QIWAVCDSKSSYAWNMQIHTGKPADGKAEEDQAMRVVLDMTSALEGHNITCDQSFTSYALGEELLRRNITMIGTTRLSNP
ELPPALLSVKGRAINSSKFAFTDTHTLVSYHPRKNKNVLVMSTLHRDDAENSDEQSKPQMILDYNSTRGGVDNFDKLTST
YTCQRKTLHWPMVIFFNMLDVSAYNAFVLWMDLNPSWEAQKTNRRRIFLQDLGRALVT
>gi|126308990|ref|XP_001362662.1| (piggyBac) piggyBac transposase [Monodelphis domestica]
SPVGLFELFFDEGTINFIVNETNRYAWQKNVDLGLTAQELKCVLGILILSGYISYPRRRMFWETSPDSHHHLVADAIRRD
RFELIFSYLHFADNNELDDSDRFSKVRPLIILMNQNFQKHAPLEEYYSFGESMCEYFGHRGSKQLHKGKPIQFGYKIWCG
TTSRGYLVWFEPSQGTLYTKPEKDIDLRGSMVIKFVDALQARGCLPYHIFFDKVFTSVKLMSILREKGIKATGTIHDYMT
ERCPLKDPKDFKKMKKGSFDYKVDESEEIIVCRWHDSNVIDVCSNAVGIEPVKLTNRYSSASKTRTQVHQPSLVRLYNEK
MGGVARMDQNIAKYKVKIRGMKWYSSFIGYIIDVALNNAWQLHRICSEETQVDLLAFRRYIACVYLE
>PITG_08962 (TyrRecombinase_Crypton) /1695
MGLEELQPGNTLRATATAVAAFSKFLKGEDVEEEYVKKCIEEDESGKSFVCVMDKFGMYLAFSEGKKGKLLARNTTMQYY
RQAKIWLLEQFPQHRASLESRLLKMGKTLDNFCLKRDGGGFVAKAPPCTKADLKKMVVYLYVNACSESDYQDAALMCLLW
YLFGRASGLSMIKKRNISIDAASVFFLRLVRVKTSEEQGLSLSPDADFATCPLLAVALALSVQAAPCPALIGNLPDQVQQ
TPTTLSPDVPLVELLNAPPATSGLATPAPPPPRTAAAPTIYAHVNRVLDRVAPAAGVSAALTSHSFRRGWAQHANGCEKM
TARWIFDRGSWNLSTTNKGFNYIFNTNLSSFDADTLDAIAEFQRVLFAACYQLETESFNINQKVLDVLTACVVRHYPVVK
GLNPDSPAVQRLETCVTQAGRTLPDLLAWSTHLAG
>gi|115894547|ref|XP_797885.2| (piggyBac) piggyBac transposase [Strongylocentrotus purpuratus] 
KPVDFFYRFFPEDLFTMLAEQTNLYARQTIQRLGVLQQHSRLNKWTETTADEMKVFTALQISMGLVTKPAIHMYWEENWL
IGTPGFSKVMSRNRYQLINSLLHFVDNEDRVPRGQPGHNVLFKVQPIIDRVRPTYQEAFAPGRDLSVDESLAAFKGRLSF
KQYLPMKPTKWGIKFWVVTDSSCGFCLDWSVYTGKNDQQDRGGDGLSTRVVKDLTRRYAGSGRHVYMDNFYSSPELYEFL
HNENLGACGTVRLSRRGIPPIMREASQQARKGEPPKFFRKGDLMGVTWHDTKRVSVLSTIHGTGCTHKEIRDKQSETGRR
QVQKPIAVEGYNKAMGGVDLLDQRMAYYKYPHKHLKWYMVVYHFMVEVALVNAFLAYRIATKDMKRSTRSFRLSVINSLL
D
>gi|67538216|ref|XP_662882.1| (helitron ORF) AN5278.2 [Aspergillus nidulans FGSC A4]
MYSTPTRHLFFFASVTDRYGPPSVNKHLAAVFFPIPHICIVHIALSYYCICLENVRRLFPVTTDVISVGVTGRISNFSGR
LIPPGVALLHGSLASPVDARASFGVGDDYQQSASILANTPPPADLTDIHNAGYDEDFQAGVSDDEDEPPAAAPPLPISVG
NTSVYRGYRSQLHRMRPLNIGRMDLECPDCHGLHWKAERDKGTSIAAPKFGKCCGGGNNFIPPVEVPTFLQRLFNGSDHD
NGRHFRQNARLYNCAFSMTSFNAGEDPRLKGQHGPFQIQGQLVHFLGPLLPDADRPPAFAQLWIYDRLTDAARDRNRALA
TAVRCTRFSDLRPGIVGELTEWFELHNRFSQQFMSATEQLFANEARGTPAELLLGPGINLVAVEGTDKRRYNLPREGEQV
AALLIDPTVNDLDHGTFREVILQLRHPVNGSGLKRIDPSHAGYLPMQYPLFFPYGDDGWHWGCRRLDGLRLSARMYHAYR
VHIRRREFSPWHYGGRLWQQYLVDAWGTIEQAKLEWIRHNQTTIRAELYSGLTDALAAADGDVLVANNTGQRVILPSNVV
GTPRYMQQLFQDAMAICQFYGPPSLFITFTANPAWDEVTRELRPGETWEDRPDIVSRVFNILRAEMVDELCKKKLFGVAP
GRFFTIEYQKRGLPHMHLVLFLEERERFLDAAHIDEMVSAELPDPREDLELYKLVKKHMIHAPCGPVYNSRAPCCDKHSD
SNMIYCTKRFPKAEQYETQPIEEGYPLYRRRADPRGAYRIKAKNNDMVRIDNTWVVPYNPYLLKRFRSHINVEVCRGVDV
IKYITKYIYKGPDRASMRSKVADEVDLYLDARYVGASEAVWRLLRFPLHQEWPPVTALHVHEPARHLVYYNSNAGMRELE
DCIDGGKSMLMGFFEYNAHAANPANAALALNRYLYAKMPQFFTWDKADRIWRPRTRNRFAIGLCVGPVSFEDLRTHDGIL
YPTFKAACNARGLLKDDREWHHAFEESVGSAIGAQLRTLFVVALTSGTLNDPPCLWEEFKCRICSDLEHYEIRRMDNPPD
IEDRHIDYGLFIIARMLAEHGERETLDRYGLPLWTAAWGRLEPQTDVLVPFIPPVDLARRVDALIPSLNIDQRRHFDTVS
AAMADRSGECFYLQGAGGTAQGKTVLCIASSGIASLLLPYGRTSHSTFGIPLALHEESTCAVTLRSTRARVLAGVDLIIW
DEAPMQHRHAFEAVDRLLQDILKVKQLFGGISVLTGGDWQQCLPVVPKAPRAGIISATLRRSYIWPRLRAILRLTQNMRL
PSVGINRLFSQLLARMSVDNTMHGTLELPDYVMDSASMSVEELCERVFPAADMTHCHTADFQASDPDFFAGRAILSMRNS
ALVEFNDRITDSMRSQESMRYSADEALTDNVAEGVEEITHEFLQSVDLPGLPPARLRLKVGMPIMLLRNLRATEGLCNGT
RMQIVELCRYTIRARILTGDFRGSVHLIPRITLYSKPGDLHYVLSRTQFPVRPCFAITTNKSQGQSLQQVGVDLRVPAFS
HGQLYVAMSRVTDVRRLSVLLPPGVRTTNNVVYPEVLQDIASLDDVPDWDDGMVTDEAA
>gi|15231181|ref|NP_187933.1| (helitron ORF) [Arabidopsis thaliana]
MWFNERINKKSNSENPKFSLCCGQGSVKLPFLKESPELIKKLLKGNDALSRHYRQFIRIYNMIFAMTSLGGKVDKSMPKG
RGPAMFRLQGGNYHQIGSLKPKDGDYAKYSQLYIVDTENEVENRANVIGKGNNGSSTKGKKNLNKQLIDAIIKMLNQVNP
YVEKFRSARERIDSTNDEPFHMRIVSDRKGTDGRLYNMPTAGEVAALIPGDFVSQMPVRDIILEKKSTGRLKRISQIHIS
YLALQYPLIFCYGEDGYTPGIEKCYKSGYTKKKKCISMRQWYAFRIQEREDESHTLLQSKRLFQQFLCDAYTTIESNRLA
YIKFNQSKLRCENFNSIKESASSGSTTMSEEGNQVLIPSSFTGGPRYMLQTYYDAMAICKHFGFPDLFITFTCNPKWPEI
TRYCEKRGLTADDRPDIVARIFKIKLDSLMKDLTERHLLGKTVASMYTVEFQKRGLPHAHILLFMAANSKLPTADDIDKI
ISAEIPNKDKEPELYEVIKNSMMHGPCGSANTSSPCMVDGQCSKLYPKKHQEITKVGADGYPIYRRRLTDDYIEKGGVKC
DNRYVVPYNKKLSLRYQAHINVEWCNQNGSIKYLFKYINKGPDRVVFIVEPIKEATSSDTTAPVVESDTTEKKKDEIKDW
FDCRYVSASEAIWRIFKFPIQHRSTPVQKLSFHDKGKQPAYFDAKAKMADVLERVSNEDSQFLAWLTLNRKNAVGKNGKR
ARDCLYAEIPAYFTWDGENKQFKKRTRGFSLGRINYVSRKMEDEYYLRVLLNIVRGPQSYDDIKTVNGVVYPSYKLACFA
RGILDDDQVYINGLIEASQFCFGDYLRNFFSMMLLSDSLARPEHVWSETWHLLSEDILIKKRDEFKNQELTLTEAQIQNY
TLQEIEKIMLFNGATLEDIEHFPKPSREGIDNSNRLIIDELRYNNQSDLKKKHSDWIQKLTPEQRGIYDQITNAVFNDLG
GVFFVYGFGGTGKTFIWKTLAAAVRSKGQICLNVASSGIASLLLEGGRTAHSRFSIPLNPDEFSVCKIKPKSDLADLIKE
ASLIIWDEAPMMSKFCFEALDKSFSDIIKRVDNKVFGGKVMVFGGDFRQVLPVINGAGRAEIVMSSLNASYLWDHCKVLR
LTKNMRLLNNDLSVDEAKEIQEFSDWLLAVGDGRVNEPNDGEVIIDIPEELLIQEADNPIEAISREIYGDPTKLHEISDP
KFFQRRAILAPKNEDVNTINQYMLEHLDSEERIYLSADSIDPSDSDSLKNPVITPDFLNSIKVSGMPHHSLRLKVGAPVM
LLRNLDPKGGLCNGTRLQITQLCSHIVEAKVITGDRIGQIVYIPLINITPSDTKLPFKMRRRQFPLSVAFVMTINKSQGQ
SLEQVGLYLPKPVFSHGQLYVALSRVTSKTGLKILILDKEGKIQKQTTNVVFKEVFQNI
>gi|9279565|dbj|BAB01023.1| (helitron ORF) [Arabidopsis thaliana]
MMKMMYINNNKKQKTKKRTRRLFDETNFPSHNQTLGSKNLVPVGSVFGRVISDITNVDLTNRSQTPHTPVSLPLYPANNN
GSSSPITPINSLNSILTGDRVLYNTPNTRENIVNPSNSSEVINPTFTRAAAKTRKSENLSKTKSVPSSLRKKTNFKTTNN
GDIVNKTTIKRLIAFKRMARKINFPSGGSPDFLTPNQLFGVDYSGNVLSDITNISGESIVSTIRLMSNNKEKVSNDQGVP
HSTKLQSKENATSIVRDNTLNDEEIDHSEAIYSDSDRSEEFDDHIFDCSSQEEYESDKDSPTDEVVGPNNMIDMNDLLRR
NLNKEFAAAASNKEHGSSTTSRCCMQGQIVLPMLKESPEYMWWLFTSDHPDAKNFRANVRPYNMLFSFTSLGGKVDRSVK
KGRGPSMFALQGENYHLIDALKPKPGDYAKFQQLYVMDTDNEVDNRIEVMSKGNNGKTEGVKQKFKKETVSALLKMLDEI
NPHVANFRIARDRFNIEKEDANFHMRIISNRDTDGRVYNLPSVGEVALIPGDFDDNLDKRDIVLQIKSEKLRRIHECHVS
YLSLQYPLLFPKGEDGYRLGIKKTETNTSKRKKKQKDVSMRQWFDYRLQERKDEKHILLRSKRLLQQFIVDAFTMIESNR
LRFIKKNQTKLRSTNKQAVQDASDAGDNDLSNKGKSVIIPPSFTGGPAYMQQNYLDAMGTCKHFGFPDLFITFTCNSKWP
KITRFVKERKLNAEDKPDIICRIYKMKLENLMDDLTKNHIFGKTKLATYTIEFQKRGLPHAHIIVWMDPRYKFPIADHVD
KIIFAEIPDKENDPKLYQAVSECMIHGPCRLVNPNSPCMENGKCSKYYPKNHVENTFLDNEGYPIYRRRDTGRFIKKNKY
PCDNRYVVPYNDFLLRKYRAHINVEWCNQSVSVKYLFKYVNKGPDRVTVSLEPHRKEVVSEENNVGETNNDPQEQNQVED
YFDCRYVSACEAMWRIKGYPIHYRQTLVTKLTFHEKGKQPIYVKEGETAESVLYRVNDDETQFTAWFELNKRDPEAAKLL
YEQIPNFYTWNGKDKNFRRRKMPGFVVGRINHVPPKIDDAYHLRILINNIRGPKGFDDIKTIEGVVHKTYRDACYALGLL
DDDKDYINGIEEANFWCFHKYVRKLFVIMLIFESLSSPAVVWEHTWKILSEDFQRKDSVMFTRAAKNIETTWNRSLEEKM
LPQLKPGDEPAFNQLILDERNYNRETLKTIHDDWLKMLTTEQKKVYDKIMDAVLNNKGGGRTAHSRFGIPLTPHETSTCN
MERGSDLAELVTAAKLIIWDEAPMMSKYCFESLDKSLKDILSTPEDMPFGGKLIIFGGDFRQILPVILAAGRELIVKSSL
NSSHLWQYCKVFKLTKNMRLLQDIDINEAREIEDFSKWILAVGEGKLNQPNDGVTQIQIRDDILIPEGDNPIESIIKAVY
GTSFDEERDPKFFQDRAILCPTNDDVNSINDHMLSKLTGEEKIYRSSDSIDPSDTRADKNPVYTPDFLNKIKISGLPNHL
LWLKVGCPVMLLRNLDSHGGLMNGTRLQIVRLGDKLVQGRILTGTRVGKLVIIPRMPLTPSDRRLPFKMKRRQFPLSVAF
AMTINKSQGQSLGNVGIYLPKPVFSHGQLYVAMSRVKSKGGLKVLITDSKGKQKNETTNVVFKEIFRNL
>gi|156540888|ref|XP_001601282.1| (helitron ORF) [Nasonia vitripennis]
MPRRRVVRTQEEEEIFQENRRERRAESQRRRRQAERNAIIDESRNEPVLRDHLGPMNISCTHCRAQHFIGEKVSNKGFSF
NDCCSHGAVHLEPTPVFPTVLNDLFNGSHAKSNDFFQHIRVYNNSLSFASFNANLVNFASRRSGPYCFKIQGQVYYQINT
ALYPEENDSPAYGQLFIVDPLEATYLRMEQNSDLQYETLEILDKVIRENNIFAKSYEMMKQEISNQQTLINSDEPVPELQ
LLFALKLGTDARRYNFQRTNEVAAVFSTTADGDIPESYVTIRNKNTKTLQYVSTMDPNVEPWIYPLFYPYCNQGWHQNLQ
CINRNNAGGNNRRVTRLAYTRYKLAIRPDEFNPFLLGRRLFQQYVVDAYVKIEKDRITYVKNHQKEIKADTYQGLHDYLQ
NSANDIGGQVGKTIILPSTFIGSPRHMQQCYQDAMALINRKGKPDIFLTMTCNPKLPEIVENLLPHQQASDRPDIVARVF
HLKKERLLDFVIKKNFFGEAAAYVYVIEFQKRGLPHMHLLITLAYGSKITTSEIVDRYISAEIPDAQNPTLQDIVLKNMI
HGPCGSWCQVDGKCSKKFPKHFVNETNMDENGYPNYRTRNTGILHKQANDNEVDNRWVVPYCPILLEKFNCHINVEVVTS
IKSVKYLYKYIYKGHDAATVTIGESNEGTSINHDEIRDFLDARYVGPVEACYRILSKILQDKSHAIIRLPLHLPYQHTVT
INVGNITQETLSSISSMLLDYFKLNLENPEARQYYYADIPSKFVYKKSKIDGLLVSSWQVRKQSFNCIGRMYSISPTQIE
LFHLRLLLLHVKGATSFDYLKTVDGILYPTFTAACLALGLIEDDEEWIKAMEEAIVWMMPVQLRRLFVHFSRTNELTISH
QKAYAHINNLLNMEGRSLSDFPTMEQTVELNIACDEIEEANLPQMAELGQQQYENLNNGQKEIVDTVLRAVNLNDHDRNN
CIYIDGPGGSGKTYIYTTLYNLLSSKNIKVCTMAFTGIAATLLPHGKTVHKTFGLPVPMYHDSSSNIKAQSKEGLFLKNS
DVFIWDEAPMAPRYALEIANRTLQHIMNNNLPFGGKIFILGGDFRQLLPIKIRGTRCETLNLSIKYSELWKYFKKFTLTT
NMRVRSNEINFAKYLLEVGNGTINDLNDNIDMPEHCNLDGDTDIAYYSFGQLIEEKLYEDMSQCAILSARNIDVDEINKQ
VTNLLDVTSEHVYTAIDSTENCNNGELDEVLLPEYLNSLNPTSLPPYELRLRKHCIVMLIRNISINEGLCNGTRLRIIDF
SNHLLKCIILTGDKAGRIVFINRITLYCENDYPFTFKRKQFPIKIAFAMTINKSQGQTFHKITIDLRANVFNHGQLYVAM
SRVRSWDSVKIYLGRQRQGVQKLRKEVFNNFHSPSHPGVKVTTRLIHQQYVWPNMSRDIASWCKACTACQQSKVTKHNKF
LPRHFIAPDARFDHVHLDLVGPFAHINGYTHLLTIIDRYTRWPEAIPITDTTAATVAHQGAQFSELLSILGINRIRTSSY
HPASNGMVEHLHRDIKSALMCHGDNQNWTPMLVLQDDPDGTKENTTPEPIRIPSPTDINRVQPADDTRPAPLTTDPVDHP
IPSPQPHTPKRTKFVPNILKRNRHSDSILLQNETSKKRISFARKLQVRTFVSETQPKNKLDLVYIVNTLREIFS
>7000001773487446 (helitron ORF) [Phytophthora infestans]
MARTKRKRTREELEEALRENELINATPMQEEKEARKRRMSKRRRKRCDLNKALQALSVHQEATAVTEATEGLADRIEERE
EKTEESDPMNLQRRFAAEMEAAYQAETEDMVRQIIPVSTAQRARERRANRTLSQKERERTSDAERARTRRANMSISQRDR
ARKKDAERKRARRAQMNGEELQERQQRRRQRQTAHRANLTAEQQQQAREQNRVQHAHRREDMSEDDREGDRDLHRQQEAD
RQSRQTEEERLQQLERVRTRRQCVRHGHALISLENFDASMITGDDVVDGRHKLPAATVCPICNAWKWPGESAISCCLAGR
VKLPPLHPAPPKLLQLYGDPEFRRQIRAYNQAFAFTSIGASCSNRSFQNVHQDESVAGTHGVYTYRIQGAMGHYLGSLLP
HIDRPTGARVAPKFAQIYIVDPDMQRRAERRLGIFADLDRVALLDIEKMMAEHNPLAQRFLHFGQQVRQHNTEAPVDLVF
RLHDNSSRPRTHNRPTVSEVAATLIEDGNLAQPRDLLLFTRDQRLLRLYETHADYDSLQYPLLLPYGEKGWTYTDEFANG
AEYRNKKAMSLREHVAFRLHQKVDDQSALHQGGRLFQQWCVDQRAKCEQEQLRWVADNQKTLRADQYRGVQDAFLNEDTL
ALAEGEVLLSEYDRAQNRLVHPDRDGGGRGRPTHFLNQVGKRIILPASHLGSPRSMYKSYQDSMAIVREYGRPDVFMTET
CNPKWDEILEALPSETQTAQDRPDIVARVWQQKLQATLDDLNQGVLGRVRARIYVVEFQKRGLPHAHVLIILADEDKPRT
REIVDKMVCAEIPDKIKNPQLYETVMSCMLHGPCGPANPFCACMKDGKCTKGYPKPLAEVTQANANGYPVYRRRRRQEGV
LKFKGREYDNATINQWVVPYNPYLSQKYNCHINVEVCTDITAVKYLYKYVYKGPDMAILTVEEVRGGQQSARREPNEILR
FLSARYISPVEACMRLLDFTIQGKAHAVTQLTVHLESGQTICFRETENPEAVLERGSHTMLTRFFELCASEEPQNHIART
MLYQDIPKEFCWKAPEKGQPKRWVRRKQYKAAVGRMIHVSPRDMERFYLRLLLCQRRGPTSFEDLRTVNGIVCPTFQIAA
REAGYLENDNEWVSCLREAAEFQMPYQLRQLSVTILVYSAPANVGVLWDRFFADLSQDFARKHQALRDPFKSALVEFETL
MSIQELLQASGYAVADFDELPQLGSFPTLIREALRQNGLLRRELTGYDVSALEAIVSTEDQLNESQRVVYDQIIEAVECP
EEGKKLFFVDGPGGTGKSTLLRNILAKVRLSGKIAIAVASSGIASLLLMGGRTAHSTFKIPLKLNESSTCGIRKNSHIQE
LIKHASLIIWDEAPMAHRHAFEAVDRTLRNILDNDTEPFGGKVFVLSGDFRQILPVVKNGTPVETIDACLKSSRLWPQFQ
TFRLTENMRVRTADTADTAEEMAAFSEFLLQVGEGRHDVSPSLGSDYMKIPRDMLIENPPVPEDEDQEIRPGVIPRGMDR
IIDEMYGEINNPAVATDEYFANRTILTTTNAIVHRINEAVTDRLTGQAREYMSSDSVQDDGDGNFFEQEVLHSMNISGMP
PHKLTLKVGMPIMMMRNLNPDLGLCNGTRLRIVALKPHVIHATIMTGERQGQHVLIPRIVFISDGDIRSFPFHLRRKQFP
VQPAFAMTINKAQGQTVHYLGLYLATPCFSHGQLYVAMSRVTSRSRFKALVEYPKLEEEDGVYAQNIVYRQIFGSE
>gi|17533663|ref|NP_494302.1| (helitron ORF) F33H12.6 [Caenorhabditis elegans]
MKKKRNEVAKTHDTSSVANPNYLGNMRCVCKNCNARFFQGEVSSSNDHINMCCNFGLTTTLQDRFSNYPDELRHLLLDDS
SHARNFQKNIRQFNSSFAMASMGAQLDVPRGRGPYCFKIHGQVYHFAGPLHPDPGQRPAFGQIYILDTDQATDERLGNPA
NADCDPAVMAELSSLLLRTNPYAQAYKMMAEVEEKENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLPQANEVAVVFVGE
DDEVPTTRSLAVHPRGGGLKTIRDIDRICDPLTYPVLFPNGTDGWHPDLEKRPSEKKQGRITQKMYYSYLLMERSGVFNP
LHHGRALFQQFAVDSWVKIEQNRLNYHRTHQVDLKAANYNAVQDYIAGDTDVPGRRIVLPSSFPGSPRAMVQNFQDAMAI
VSKFGKPDIFLTFTCNPAWTEISENLGPRQSASDRPDLIARVFKLKVDALFDDLLNRDILGHVAAYISVFEWQKRGLPHV
HMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPCGAQNPHSPCMVDGHCSKRYPKDFHPSTTLNVD
GYPGYRRRDDGRYVDYGTQHLDNRRVVPYNKWLLLRYNAHMNVEICGFIEAVKYLFKYVYKGHDRAALNIIQNVRGDGNV
VDEIREHLDARYVCVPEAIHHILGFKLEKKASVTTQQLESSSQTDTTLTAWFKINQKSKDIAESGNIPSTFVDSRQFFYM
DMPTHFTFVKKDGWKVRGRGTRQIGRMYTVPPYETERYALRILLLNIKGATSFEDLRTVLDENNVPVVYATYVEAAKAQG
LLNDDSEYLKSLKEWAGCSVPAALRSMFVAIILFNEVHDLNALWDAVKWDLSEDFRHAGAGKEEAEALAYFDIESRLQRV
GKRFDVTKPSINPPPIDLDTVNPAQCASEGNRLLATLNDQQKRAADQILAALDDASLPRLFYLDGPGGSGKTYLYITLYN
ICVGRGLKVACTAWTGIAANLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQELAENDVFIWDEASMVPKTALDTVDVL
LRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLWTEFQILHLISNMRVTSGDSDWIQFLLNVGDGS
ANDSDSKVTLPLSVMCDHKIVEEVFGAVIDPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQAD
TMHYPTEFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLGCRFATGERKGHFTIIPRIDCY
DDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIVKSSSNIVTNIVFNEVL
>T5E15 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
KGFVRPSSSLWGAPVLFVKKKDGTFRLCIDYRGLNKVTIKNKYPLPRIDELLDQLQGASWFSKIDLASGYHHIAISEADV
SKTAFRTRYGHYEFVVMPFGLTNAPAAFMKLMNNIFREFLDKFVIVFIDDILIYSRSKEEHVEHLRIVLQRLRDHQLFAK
LSKCSFWQKKIGFLGHVI
>MTO24-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDSGIIRLSQSPFSSPVLLVKKKDKSWRFCVDYKALNRVTVPEKFPIPMIDQLLDELRRVVVFSKLDVRVGYHQIRMRAE
DVAKTAFHTHDVHYEFLVMPFGLTNAPATFQASMNDLFRPYLRKFVLVFFDDILVYRKSMEEHLTIVMRLLSEHQFFANG
KKCSFGEDNVDYLEHII
>Athila6-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFS
SCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGHKI
>T24G23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDADIIYPISDCTWVSAVHCVPKKGGMTVIKNDHDELIPTRTITGHRMCIDYRKLNAATRKDHLPLPFIDQMLERLANHV
YYCFLDGYSGFFQIAIHPNDQEKTTFNCPYGTFAYKRMPFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFSVYGSSFS
SCLLNLCRVLERCEETNLVLNWEKCHFMVQEGIVLGHKI
>T32O2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPIFDSTWVSPVHCVPKKGGMTVVKNEKDELIPIRTITGHRMCIDYRKLNVASRKDHFPLPFIDQMLECLANHP
YNCFFDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDNFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKYHFMVKEGIVLGHKI
>MTO24 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPT
DVRKMAFRTRYDHFEFVVMPFGLTNTPAAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSWEAHQEHLRAVLERLREHELF
AKLSKCSFWQRSVGFLGHVI
>T17A11/F15O11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
MAKGHIHEGMSPCAVLVLLVPKKDGRLRMFVDCRAINNITVKYRHPIPILDELHGSCIFSKIDLKSGYHQIRMKKRDEWK
TTFKTKHGLYEWLVMPFGLTNAPSTFMRLMNHLLRAFISQFVLVYFDDILVSSKSMTEHIDHLESDMKVLRKEKLFPNLK
KCTFCTDNLVFLGFVV
>gi|29423282|gb|AAO73529.1| gag-pol polyprotein [Glycine max] (SIRE1) (Ty1_Copia-family)
MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGN
SKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMTILEIANACT
ALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYD
LDTDEGLTNAVVFLGKQFNKVLNRMDRRQKPHVRNISLDIRKGSEYQRKSDEKPSHSKGIQCRGCEGYGHIKAECPTHLK
KQRKGLSVCRSDDTESEQESDSDRDVNALTGRFESAEDSSDTDSEITFDELAIFYRELCIKSEKILQQEAQLKKVIANLE
AEKEAHEEEISKLKGEVGFLNSKLENMTKSIKMLNKGSDMLDZVLQLGKKVGNQRGLGFNHKSAGRTTMTEFVPAKNSTG
ATMSQHRSRHHGTQQKRSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQGSSSGRKMMWVPKHKIVSLVVHTSLRASAK
EDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHEGLPSLNKVLLVKGLTVNLISISQLCDEGFN
VNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQESSHSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNL
KIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEV
FKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYN
LWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRV
FNSRTRTVMESINVVVDDLTPARKKDVEEDVRTSGDNVADTAKSAENAENSDSATDEPNINQPDKRPSIRIQKMHPKELI
IGDPNRGVTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKT
NEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFV
DPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFV
QQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSM
IGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSGSMLVGYCDADWAGSADDRKSTS
GGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTK
HIDIRHHYIRELVDDKVITLEHVDTEEQIADIFTKALDAKQFEKLRGKLGICLLEEL
>aT4P3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKAGSIREVKYPKWLANPVVVKKKNGKWRVCVDFTDLNKACPKDCFPLPHIDRLVESTTGHEMLSFMDAFSCNNQILMKS
EDQEKTSFITERGTYCYKVMPFGLKNVDATYHRLVNTMFKDLLGKTMEVYIMDMFVKSAVSTSHLEHLQECLTFLNEFGM
KLNTLKCTFAVPSGEFLRYII
>aT6L9 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVQYSEZVVNTNVVKKKNGKDRVCIDITGLNKACPKDSFPLPLIHRLVESTAANELLTLIDAFSGYNQIMMNS
EDQEKTSFITDTGIYCYKVMPFGLKNAGATYQRLVNKMFHKHLGKTMEVNIDNMLVKZZEIEDHIEHLEECFGILNEYQM
KLNPAKCTFGVPSGEFLCY
>aT17A11/F15O11-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LRIGSITKAKYPEWLANPVVVKKKNGKWRVCIDFTDLNKACPKDSFPMSHIGRLVESTSGDKLLSFMDAFAGYNQIMMNS
EDQEKTTFYTEQGIVCZRVMPFGLKNPRATHQHFVNKIFTLQIEKTMEVYIDDMLVKSMEEEEHVAHLHGCFQQLNLYNV
KLNPAKYRFZVRSGEFLGYLV
>F1M23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEAWIIYPISDRSWISPVHVVPKKGGVTLVKNEKDEIIPPRIITDHRMCIDYRKLNAATRNDHFPLQFIDQMLDRLANHK
YYCFLDGYLGFFQISIHSDDHEKTTFTCPYGTLAYRRMPFGLCNAPAIFZSGMMSILTDMIEDIMEVFMDDFSVYGSSFE
DCLENLCKVLITCEEKHLVLNWEKCHFMVQDGIVLDHRI
>F26H6 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQ
NDREKTVFITDQGTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYNM
KLNPSKCTFGVTSGEFLGYLV
>T1O16/T13P21-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGSIVEVKYPEWLANPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQIPMHK
DDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDMLVKSTRSADHIDHLKACFETLNKYNM
KLNPAKCLFGVTSGEFLGYIV
>T12O21 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGAGSIVEVKYPEWLANPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQIPMHK
DDQEKTSFITDRGTYCYKVMPFGLNNAGARYQRLVNQMFAPQLGKTMEVYIDDMLVKSKKSADHIEHLTACFETLNKYNM
KLNPAKCSFGVTSGEFLGYIV
>F1M23-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVQYSDZVANTVVVKKKNGKDMVCIDFTDLNKACPKDRFPLSHIDRLVESTAENELLTFMDAFSGYNZIMMNP
EDQEKMSFITNRGIYCYKVMPFGLKNAGATYQRLVNKMFREHLGKTMEVYINDMLVKSLKKEDHVKHLEEFFAILNQYZM
KLNPAKCTFGVPSEEFLGYIV
>F1M23-4 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LRIGSITKAKYPDWIANPVVVKKKNGKWRVCVDFTDLNKACPKDSFPLPHIDRLVESTSGNKLLSFMDAFAGYNQIMMNL
EDQEKTAFYTEQGIFCYRVMPFGLKNAGATYQRFVNKIFALQIGKTMEVYIDDMLVKSMEEKDHITHLRECFKQLNLYNV
KLNPAKCRFRVRSGEFLGYLV
>T16i21 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPT
DVRKTAFRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELF
AKLSKCSFWQRSVGFLGHVI
>MIF6 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
FDVGVIYPISDSTWVLPVHCVPKKGRMTVVKNEKDELIPTRTITGNRMYIDYRKLNAASRKNHFPLPFIDQMLERLANHP
YYCFLDGYSGFFZIPIHPNDQEKTTFTCSYGTFAYKRMPFGLCNAPATFQRCMTSIFZDLIEEMVEVFMDDFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIMLGHKI
>F7I20 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDVGVIYPISDNTWVSLVHCVPKKGGIKVVKNAKDELIPTRTITGHRMCIHYRKLNAASKKDHFPLLFIIQMLERLTNYP
YYGFLDGYSGFFQISIHPNDQENTTFTCPNGTFAYKRMPFGLCNAPATFQZRMTSIFLDLIEEMVEVFMDDFSVYASSFS
SYLLNLCRVLKRCEETNMVLNWEKYHFMVREGIVLGHTI
>F5K7/F18P14/F28N16 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDASVIYPISDSTWVSPVHCVPIKGGMTVIKYSKDELLPTRTITGHRICIDYKKLNAATRKDLFPLPFIDQMLKRLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPCGTFAYKRMPFGLCNAPATFQRYMTSIFSDLIKEMVEVFMNDFSVYGSSFS
SCLLNLCRVLKRCEETNLVLNWEKCQFMVREGIVLGHKI
>Athila4-5 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSLVHCVPKKGGMTVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLEHLANHP
YYCFLDGYNGFFQIPIHPNDQEKTNFTCPYGTFAYKRMPFGLCNAPATFQRCITSIFSDLIEEMVEVFMDDFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKI
>f23m2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEAGIIYSISDSSWVSPVHVVPKKEGVTEVKNEIDELIPTRTITGHWMCIDYRKLNAATRKDHFPLPFIDHMLERLANHK
YYCFLDGYSGFFQILIHPDDQEKZTFTCPYGTVAYRRMPFGLCNAPATFQRGMMSIFTDMIEDIMEVFMDDFSVYGSLFE
DCLENLYKVLARCEEKHLVLNWEKCHFRVQDGIVLGHRI
>Helitron-1_AAe#RC/Helitron 1272-6118 via tfasty with Helitron-1_AC_hel, 1 frameshift. [Aedes aegypti]
MAPNKRKCIGRVQTKAKKVKEQRKQESSLTRNKRLAALRERARASRASETTAEREVRLKGVAFRTLRTRDKETIQCREER
LKNAAERAAAARAVETQQHRELRLQAMAQRATTSRAEETDQQRKSRLQDMALRSATSRSEETVQQRETRLHDMALYATAS
REEETVQQREDRLYNQRERTVLLRTTETVEQHATRVQEMRCMARHSRTIRHINLALEAFRYDPQKNYMEHNDVTIGKMEV
VCTYCQAKKFKNEAPGICCKNGKVNLSQLEPPPQALLDYMSGNTPESKHFLKFIRKYNACFQMTSFGATLVVEQAGFPST
FTVQGQIYHKAGSLLPLPEQPPKFLQLYFIGDEQMETDRRCSYISGTRRQIVQHLQQMFQEHNDLVRVFKSALDRMPSDE
FKVIIRADRRPPDEHERRFNAPQVDEVAVVVTGDAYDQRDIVIQKRGESLQRISETHRPYDALQYPIMFPHGEDGYHFNL
KQIDPTTGESTTKKVSAMDFYAYRLMIRGDAYNHLLNCRQLFQQFVVDMYVKIESERLLYIRLNQRKLRVDDYVHLKDAI
ANDGNVDNLGALVILPATFTGSPRHMHEYTQDAMTYVRMYGRPDLFITFTCNPAWPEITEMLTNGQSVNERHDLVARVFR
QKQLKLIEAITKGHVFGAPRCWMYTVEWQKRGLPHSHNLIWLVNKLQPTQIDDVISAELPDPVVDPELHAVITKNMIHGP
CGNLNLSSPCMRDGKCTKKYPRNFVEQTQTGNDGYPLYRRRSTENGGMSVKLKVRNTEVEIDNRWVVPYSPLLSKMFQAH
INVEYCNSVKSIKYVCKYVNKGSDMAVYGISSENTNDEVMQYQLGRYVSSNEAVWRIFGFPIHERHPTVVHLSVHLENGQ
RVYFTPENASRFADHPPNTTLTAFFQLCQEDPFARTLLYPEVPRYYTWDAAKKIFHRRKVGKPVLGHDIFASDALGRVYT
VHPNNAECFFLRMLLHSIRGPRSFVELRTVNQTVCQTFREACQVLGLLEGDRHWDDTLQEAALLCLPDQIRTLFAIILTT
CAPSNPYALWEKYKEALSEDVLMNVRRSIPTVQITYNTDIFNKALIMLEDKCVAMANKTLLQLGLPAPIRNEERMIDADY
IRETAYNIIDLTDYVVEKESLLNSDQKIAFELIMDEVVKQSGGVIFLNASGGTGKTFLTNLILAKIRAQGEIALAVASSG
IAATLMEGGRTAHSAFKLPLDLTRQENPTCNISKTSGKAQVLKLCKLIIWDECTMAHKKALEALDTTLKDIRGNNKLMGG
ALLLLCGDFRQTLPVIPKSTPVDEINACLKYSAIWKHVTKVSFNIYNDWIIRVNILFLFFFRLTLKTNMRICLGDEHAQT
FAKQLLEIGEGRVAIGSNGYIKLAPNFCNLVSSAAELIDVIYPEIADNYRNMNWLRERAILAAKNEDVNDMNNQILAKVP
GAMMEYKSIDTVEEADDAVNFPPEFLNSLDPAGMPPHRLLIKEGCPIILLRNLDPPKLCNGTRMCVRKMLANVIEAVILT
GKGQGETVFIPRIPLVPSDLPFSFKRLQFPVRLAFSITINKSQGQSIEHCGVDLRSPCFSHGQLYVACSRVGSPKNLNIL
APSDETKNVVYKQVLS
>BEL1_DR#LTR/Pao 80-5893 [Danio rerio]
MESTHSYKTRSYASCSRSSSSSTSAAAAMARAKAEAAKARLKFADEEEKIKVEKAKLEAKIDKMALERETAAAVAEAEVL
EAAANTSVHSKHEPQLETTPADVMQRTSEYIEQMNLHASTELASQPEPLPSAETVNPHTELLVTNSVPDTRLKTESCSDD
AEFYHMQSRRDSVQASQFTPRRYHLHDPTDSEVHRRRAHFTQSHIPPVSTTSQMPQSVKDKTDISDFVRYFARRELVNTG
LIQFNDQPESFRAWQRSFQNAVGGLDLTASEEMDLLVKWLGKESAEHAKRMRSVHINQPLKGLDMIWTRLEECYGAPEVI
ERALFRRIESFPRISSRDYSKLHELSDLLMEIEAAKADGYLAGLTYLDTAKGINPIIQKLPFNLQEKWLSYGAGYKERYG
VSFPPFEVLVDFISQQARIRNDPGFNFFTQTDSVYKTEKSSWKSNKSREVSVNKMNVSTPVHLDTDKDERKSVDAEKLCP
IHNKPHLLRNCRSFREKPLEERYAFLKEKCICFKCCIATTHIAKNCKFVTKCSECGSEKHISALHPGPVQKAQETVSLPL
HGGEQVSTSLEEVEAHCTEVCRDDHSSKSCSKISLAKVYPKGQPEKAMKVYVILDEQSNRSLARSEFFDAFKENTPATPY
TLRTCSGVTEIISRKASGYQMQSLDGKVVFSLPSLLECNNIPDNRAEIPTPSAALHHPHLKPIASFIPELEPDVPIMMLL
GRDIIRVHKVRSQVNGPNDAPYAQKLDLGWVIVGNVCLNGIHKSTAVSTFFTYTKEQRPSIFDSCPNVFCVKGRKSNEQK
NDNGICSMEQLICNREHDQLGKDVFKVTCDDNKVAPSINDLTFLQIMEQGLERDENNSWIAPLPFKVPRCRLPNNRCQAL
KRLLILRRNLERNPQMKQHFFTFMDKIFDKKYAEEAPLLLEREESWYLPLFGVYHPKKPGNIRVVFDSSARYEDVSLNDV
LLSGPDMNNTLVGVLMRFRKEAVAITADIEQMFYGFLVREDDRNFLRFLWFRNNDPSEDIVEYRMRVHVFGNSPSPAVAI
YCLRQSVKDGDPDVRSFVNRDFYVDDGLKSLPTEKAAIDLLKNTQRILAGSNLRLHKIASNSTEVLKAFPSQDHASEIKD
LDLGSDMLPTQRSLGLNWNLRTDTFTFKIDTQAKPFTRRGVLSTVNSIFDPLGFVSPVTIQGKLIMRELNNQNDDWDAPL
PKEMEEKWETWRQSLIDLKNLNIPRCYTNISPSTATQRELFIFSDASTKAIAAVAYLRLTDSFGVSQLGFVMGKAKLSPE
QTIPRLELCAAVLAVELAEFITSEIDMHLDDIAYFTDSKVVLGYIHNESRRFYVYVSNRVLRIRKSTHPSQWKYVCTTEN
PADIATRYVTAAHLQNTDWLCGPNFLLNNPCTQEKNEFELVNPSSDAELRPEVSTLSTALRNKSLGAQRFSRFSTWKSSI
HGTARLLHISRQFCKGSTTQTSGCKGWHYCLNAPTVEELLCAEKIIIKTVQQETYAQEYESLKTGNKLSKQSSLKALDPF
IDVDGLLRVGGRLTEAQIEGDVKNPLIIPGKHHIATLLIKHHHEKVRHQGRHYTEGAVRAAGYWIVGGKRKVCSVIHECV
TCRKLRATPQTQKMSDLPADRVSMDPPFTNVGLDVFGPWDVVARRTRGGHAQSKRWAVIFTCQSVRAVHIELIESLDTSS
FINALRRFLAIRGPVKLIRSDRGTNFVGACRELNILSNIDKTSVEKFLLDQSCVWQFNPAHASHMGGSWERMIGLARRIL
DAMLQQLGPSALTHEMLSTLMAEVTAIINARPLVPVSSDPNDPFILTPSALLTQKVTIAPAPTFDVDKNLHIRQWRKVQH
LAQTFWDKWKKQYLTLLQPRRKWPSSEPDLELGSIVLLKDEQQKRNEWPMGLVTQVFPSKDNKVRTVEVKVFKKDGPKMF
IRPITKTILLLTPEKLD
>LvNgaro1_pol#LTR/Ngaro gi|46241321|tpg|DAA01767.2| TPA: polyprotein [Lytechinus variegatus]
CWWPLMVRGSATIYPMPLAISSTEGSTARENLFPSEERDPEPMAHPAEACALPLIEASACEAKLASMSTSVPAARRQVMG
LSSVAKGGPVPVPLAVNRSTASAVSSIAPTPIKLARLVPMLATYPNQEHAQCLYNGFKFGFSLHFEGDRVPLVVKNLKSA
FEHMDALKKKLRDEIDLGRIVGPFVVPPFENMRCSPVGLVPKKAPGEFRMIQHLSAPRGNSVNDGIPEGQCTVTYSSFDS
AVDIVTQLGRGALMGKTDIKSAFRLLPVHPKDFELLGMYIDGRYYFDRCLPMGCAVSCSTFECFSTFLEFCARKVAKSQN
IVHYLDDFFFAGGPASEDCRRAMHCFEAICERFGVPIAREKTEGPTTQLSYLGLVIDSVSQQVRVPEDKIEKLVGKLNWA
VQKQKISLRDIQSIVGSLNFVCKAIAPGRAFMRRLIDLTKSVKRPFHMVRLTRGAKADLRVWLEFLAHFNGQVFFRAPGW
FGSEEIQFFTDAAAGIGFGIFFGGRWAQSRWPADFQADRRSIAFLELFPIWVGLEIWGMELKDKNILFNCDNQAVVAVLN
KQSALCPDIMVLVRKVVIICLSNNIVLRARHVHGCDNGIADALSRFQMPRFHALAPGAAREGVEVPVRLWKSWLSREVDC
>BEL1_Dya#LTR/Pao 1692-7147 via tfasty with MAX, 2 frameshifts and 3 stopcodons. [Drosophila yakuba]
MPIGHGEEVKTRLTVSKTSQRVRAKSESSVPFKSPSPTRSKSPSTTPRKSTSTSLQVPRSAPNTKPNSDFSPQIIRATAK
MAQAEADRALMKFMTITDRVGQFEARVNTPAVTSPSIHTSRVRLEQIRALWDKVEKEYEACSEALSGLGSTDTITVMQSK
YDYCYAVYERCAASLNEIIEEGSRSQQAVQASIPAPPQGGCRLPPVECDSFSGDYVHWPTFRDLFSAIYIYNPRLSEVEK
LFHLNAKTSGEAKSIVALSPLTNDGFESAWRNLQNRFENKRLLVNSQLKILFNLPSVGLECGNSLKQLESTIQGCLTALK
IAKIATSNWDCLLVFLCSAKLPKLTLSLWEQSLMSKTDIPLWAEFQAFLQDRHRTLEAIEDFKPNAQSRALRTDNSPRAI
QTFENRVTVTPQSCKLCSQENHPIRVCPLFLRMPVGEREKYIKQQKLCLNCFSRTHLLRDCTSTHNCNTCKGRHNTLLHR
SGTPPVQSAVNPDHQAHVSTFNHQQDIQSTPLTNQPNVQTFLAVNTQGVLLSTALIEICHxGIKYSARALIDSGSEATFI
SERLFNLIKLPYESIHAQVSGLNLTVAAxPRKRCQLSIGSPVKPHIQIKTSAYVLPQLAGSLPSFTLPEDSLKHLPPLxL
ADPNFYRSSQIDVLIGADILPSIILSGSHPNICGTLLGQKTIFGWILCGPIATNPTSRICSFSSRLAVTESRLDNILTKF
WEVEDVPVKRVRESTSICEENFVQSTKRNENGRYVVSLPFKDINNINLGHSRSIALAQFLRNEIRLNKDVASKKQYDSVI
QEYLDLGHMHQVSPDDSNNFYLPHHAVFKPDSTTTKVRVVFNASNPSSNGNSLNDILHAGPVLQSDLTIQILKWRFFKYV
FNADITKMYRQIRVNSTHKRFQRILFRNKDGELCDYELDTVTFGVNCAPFLAIRVLQQLAQDIRGQYPLASDNISNFMYV
DDVLAGTHNKQSAVLAIEELRLALESAGFPLRKWTSNERKLLQEVPKEHLISADFLELEEASTAKTLGIRWQATSDSFFF
IPMVIHLQTAYTKREVLSQIAKLFDPAGWLSPFVVRAKIFMQKIWLRELGWDQPLPRDLATQWREFLEGYPALKEIRIPR
WVRFHPAAKLQYHAFCDASQDAYGAAIFVRIETKEGCCTHLLTSKTRVAPVRSISIPRLELCGAVLLTELAALVISEMPP
HVYETFYWTESTIVLAWLSKPACTWTTFVANRVAKIEQCTDGSKWGHVRSEDNPADLASRGVSPQELKDSALWWRGPAWL
HLKQEQWPSELLVHPETELEQRPVKCHTVAVPSAVEILERFSAFDRALRVLAYVFRFVKSCRREGVASSAELTAAELSEV
QERLIVLTQKNEFPAEYKVLSNQQPAPVPPASAISNLNPFLDGDGVLRASGRLQASEMLSYDEKHPIILPARCRFAELQV
LFIHRISLHGGNQLMIRLIRSKFWIPKLKMLVKRTIHSCRVCVIHKKILQTQLMGNLPRARSTFSRPFTHTGVDFAGPFD
VKSYVGRACKITKGYVCVFVCFTTRAIHLEATSDLTTEKFLAAFSRFFARRGCPQHVYSDNGKTFVGASTSLSKDFIEAT
RTSVLSQHSLQNVSWHFNPPGAPHMGGLWEAGVKSFKSHFYKYTAAGKYTFEELTTLLAKIEACLSSRPISPMSEDPTDL
IALSPGHFLIGGPLLAVAESEVKEGPSSIINRWRRLKALNQQFCLRWKEEYLKELHKRNKWKFPTRDLQAGDMVVIKEEN
LPSNEWRLGRIQVVCPGVDGKVRVADALTARGVVRRLVAKMIRLPMDSPNESKDSSIL
>BEL3_DM-I#LTR/Pao 1390-4065 [Drosophila mojavensis]
MSDRSGRAQLSVPASRLIKRSASASPIPSGKPQTSSTFKRSPVVTRSSIKPASPSKMSLSDFISAADRLIKFESRIDGPG
DSNATQAAQLRAFEIRRDRVKALWDDAEQQYKVCARALSQGASSGEVEATEAKFDNCYTVYERCTTHLGVQIDALSASST
PPAPMSAPFATSEGCRLPPVDMEVFHGDYLRWPTFRDLFTAIYINNPCLTPVEKLFHLNSKTAGDANALVAEYPLTNDGF
ASAWVSLCDRFENKRLLVNSQLKTLLNLSKITKESGSALRELHSTMHRCVTAIEHAQISTESWDCILVFLCTSNLPEQTR
SLWEHSLKRKTEIPAWQDVSHFLSERARALEAMEGDRSVPKVPNSIPRSANPALPERLNSFRTQVDTIGTRCDLCSRENH
PIRFCHQFLQLSIHERETYIKSKKLCLNCFAKGHQLRECTSTHNCFTCNGRHNTLLHRDNTLRTAAASATAIAPTRTPVM
SNVQTYLAANTRGVLLGTAVINICHFGATYPARALVDSGSEATFISERLFRKIKLPFKSVHTQVSGLNQAVTAEAHKVCN
FDIGSPLKPRMRIKASALVVANLAGNIPSSPVPQLLLNKLPKIQLADPEFYKSAEIDVLIGADILPTIIQGGYHPNICGP
LIGLETVFGWVLTGPLSQMIPGTVSSFTTQVSVSEEAKLESPPTVSSDEALPFRAPNSTTPKVRVGFKALRPALNDILHS
GPSFQPDPRPPCAVKLTSMLCPNEQVILPPTHSIFQIKTPSSESSKPRGTNSFQCRVCPGAHGLRDCQRFLGLSGEKRMR
AVLTHKYCTNCLAHEHSGQSCRSKGRCKTCGQNHHTLLHLQGSARLSASTPKQAVTAPLTTLIRTARGLQLGHDVLICNP
CKGGEYVNARSH
>BEL1_SM#LTR/Pao 73-5991 (gag & pol; about 340 AA longer at N term than other Pao pols) [Schmidtea mediterranea]
MMEFTIGSRAWFPSGGHAQIRKTEAQRERGPRISEGQQPSRNQLMNPRAPRQELLLFFIKHIWGSGGFRLPKFLLMTNIY
LNLISILKFKMGRRPASCYRYYKNNSYPKSRFCRGVPDPKIRIIDLGIKKAGCDELPACVCILSDEIEQLSSEALEAARI
CANKIFVKTLNGKTITLEVASGDTIEKVKAKIQDKEGFPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLGLRLRSGMQ
IFVKTLTGKTITLEVEPSDTIESVKVKIQRKEGVPPVQQRLIWAGKQLNDNHTLLEFNVRKGSTLHLALRLKGGNDEEEF
CDGMSKISSTKNKLTRLRNRVKLSLEQSDGSKVYEQYLGEQEEVINRLTQLKLLGNKIGKVAEVKKIEKDINEIMERDET
LNNQIEVMTNKKLGIESSKTKSEEYTPTLDKLKRLTIPVFNGQIREFPAWKAAFEVRVNKALGSKEEKLQHLREYLVGEP
LKLIDTLGYSAGAYDAALERLESNYGGEERLYRNLLQELERFRPIREGQIRDFENLLSLIGTLVVRLEDMGRDNELGAGF
IFEKLLQKLSHSVLDEWLTNYDNSKNGSDKAVKILQGWLGSKLQRTKQAMEIKGTMEFRRTNYEERSVYNKEYRGQPVMS
HVTVNQNTKNKSNKIEKFKYRGSCTKNQGISNRQEELKNQKCPMCEEKHYLNQCLVFRKMNVEERTRKVRELKLCFNCLS
KGHFVKECLKEKLCRFENCEGKHNYWLHRILEPKTSEESVMMGVEPYQLSANKRWISLRTIPIILEKGNRQLVVNALLDD
ASTASFISEQVATELNLSGEKVRIPIKVVGGRTQEVVAHRTEMTLKSLDGSVEKCFKAMALKSVTGEMRVMDWNEAAKSW
PYLAELKFPSYLKRKTVDVLIGADYLELQYSIKEIRGGEGEPIARLTPLGWTCIGNTGYGNSFSHQSNFVQTYFVSGNSM
NFELQKFWELEDLEMPPSSHSMKDREILQHSIEAMQFENDRYEVELPWKFEKPHLKSSRRMAEKRLMNLFGRFERDKELE
REYTKLIDDHERKGYIEEIDEKQMANEGWILPHFPVIKRDRETTKIRIVFDAAAKVEGRCLNDNIETGPKLYNDLFDVLI
RFRKNKVAIVCDIAEMFLQIGIIKKDRKYLRFLWKKDNQLKFYEFNRLVFGLNAAPYLAQLVAQENARKFKEKYPRAVET
IAESTYMDDSLDSVGTEKEASLLKAQLEEIWNKAGMRTQKWMSNSTKVLENVPIENRAIKLDIEEEGSMTMKTLGLRWVA
NLDVFEFSVKAFESETLTKRLLLSWIARIFDPLGFLAAFVVRGKMIMQSIWITGADWDECLPLNIDQEARLWVNEAREIV
SMRVPRNLLESESDDWTIHVFSDASEKAYGSVAYLRRQSSGEIQCKFIAAKSKVAPVKTVNIPRLELLGACLGLKLAKKI
VKPIGCNINEVCFWTDSHNVLYWIKQRSKTFKQFVANRVGTIQEETTAGQWRYVPTKMNPADMISRGATIKELQDREEWL
GGPKFLSSSEDEWPKTELKGIKVDNREEKKVVMMTLGPEELGHKHVDCFAPETYSDWTRLRRDYAWMLRFINNCKMKSKE
SRNSGDLKSNEIEEAERRIIKIDQERYLATEVKKLIEGKRVDEKSKLIELNPVLDDDGIVRSDSRIINAEFLENKTRYPI
ILSDESWIARLIIKELHVKNKHYAGVNHTLGELNREYWVVCARKLIKKCMKGCFECRRRKAKGMEQIMAPLPSFRFQEPL
QAFARIAVDFAGPFETIQGRGKTRQKRYMCLFTCLQTRAVHLEVAYALDTDAFIRAFIRFMGRRGKPLMILSDNGTNFVG
ATNEVQEIKVDSYRFNKFMSGNDIRWIFNPPLAPHFGGVFEALIKSAKKALQVIVGSADLSDEELNSVFIKVESLLNARP
LTTQCSDSKEDLVLTPNHFLLLKQPQNEDEILNPKTGASYRRRWRRNVGRER
>DIRS-39_NV_yr#LTR/Ngaro 1389-2348 via tfasty with LvNgaro1_yr, 1 stopcodon. [Nematostella vectensis]
RTDLRRTRRAAYAKGTYSNLRNSYYCYFVLITSYSQxLLVLTLFVYMHSSLVALCVXSSIQNYLSGVKLLHTFLDEDCSF
SQSFIYNLTIRGIKRSSFHCPNRAPPVTPEILARASASLNFLSDPFDCTMHCAFLFSFYLMTRLANIIPVSRSQFSARRD
LTRADVVINSTGLLVTFKQTKTTQFGDRPLQNPLLSIPGSPLCPVAAYYRMLSLVPAPSSRPLFLLLDSNGKSYPLTKRV
LVSTFRSCLRFAGVPNAEAFRGHSFRRGSTSWVFKLGLLGEPIQHYGGWASDSYKLYIDLSLTSKLAFASTVREAVAALL
>DIRS-26_NV_pol#LTR/Ngaro 255-1937 [Nematostella vectensis]
MHVISAVLVATLPLNVFVPNGNNREDNRNMPGPNLPTPVKSERFLHLLSGYEPAIFAYLSKGFNSGFSLHFEGTLEPLES
QNLLSASEHPEIVDAKVFKELEAHRLAGPFAIPPFSPFRVSPLGVVPKKTPGEFRLIHHLSFPKGISINDGIMPANTSVR
YATIEDAIRFIRHNGTSCYLAKTDIKNAFRIIPIDPKDYPLLGFKWRDSYYYDRCMPMGCSSSCKTFETFSTAVEWIARN
KLHIHSILHLLDDFLIIAPTEDLCRAQLQLFLDLCNYLGIPIAPEKTMGPATTLQFAGIELDTQMLVARLPQDKIDKSIQ
LITSFLRRKKVSLQELQSLIGMLNFACSVVMPGRAFLRRLIDLTINVRAPHHKIRLNISAKEDLKIWLSFLQNFNCKSFF
LDEHWVSSPKLRLFTDAAGSLGYGAVFGDEWCYGQWPDTWVGKNIAILEFYPIVLSVHLWGHRMTNQCILFFTDNEALVY
VINKQSCRDKSLMFFVRHLVALCLKHNILFRAKHIPGVHNILADSLSRLQLQVFKDKAPATMHSNPTEIPLSLLPQHWGP
>SHIV_vif#LTR/Lenti gi|9629917|ref|NP_046124.1| vif [Simian-Human immunodeficiency virus]
MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPEKG
WLSTYAVRITWYSKNFWTDVTPNYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKYQVPSLQYLALKVVSDVR
SQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGANFPGLAKVLGILA
>DIRS-27_NV_yr#LTR/Ngaro 2399-3457 [Nematostella vectensis]
YILCLKYPFSSYISSLVYFKFYFSDRSQQLIHYAYEVQRFAFQESTKRNMRSQLQAYIHFCSYYQLVPFPVTKQTYLAYL
VFLSRSLSCYRSVINYVNILKHVNNSLGADLSFMQGYDCVLTQKALRRMMGDQVSHTLPITITILLKCVQNFDSRNVFHV
CMHAAFLVAFFSFLRISNLLPYKASDLLSSANLFLRRNQVAFVSSGALLSVYRTKTLQFQERILEIPLPTIPGSPLCPVS
ALKRYFDIVPAAPNSPCFVIPRGIQTTPVLASHFNSFLKKCVHAIGLNPSNFSSRSFRKGGATFAFNRGAPTEFIKAQGD
WKSDAYLVYLTLSSRKKLAILNSITTRLANKQ
>DIRS-29_NV_pol#LTR/Ngaro 57-1423 via tfasty with SpNgaro1_pol, 3 frameshifts and 1 stopcodon. [Nematostella vectensis]
SALGAIPKPDSAEIRLIHDCSRLHGLAVNDYIEIDKCQVSVSRRRDNFLTPNAYMAKVDSKHAYRSIPIHPDNHRATGCK
WKFSRDTDYTFFYDTRLPSGAKSSPSIFNRITQSIRRMMHRRGFRDIVVYLDDFLVARDTFEQCNLAYETLTSLLSDLGF
TLSARKLVPPTQRLTFLGIQLDTVECSMALPQEKLRKLNNLVIEFQKKRKANKKQLQRLTGKLNWACRVVFGGRTFLRRI
IDTMNDLGPTGKYWLDYEFRRDLNWWVEFLKVFNGKRLFLGAVPTVDVHTDACASGGGGYFRGDWYYHSFPLDSPEWDTL
HINHKETLAITLAGKRWAHAxSNQRVIIHTDNQAACAIINKGSTANRAIMQELREVFWLSAMYNFHLTAVYIEGGCNAVA
DAVSRLHTPSHLLYFYSTLCALFPNGDVDNVPPLAHMSPYSLHLVSSRFTLAGDCR
>DIRS-28_NV_yr#LTR/Ngaro 1732-2788 via tfasty with SpNgaro1_yr, 2 frameshifts and 1 stopcodon. [Nematostella vectensis]
CTFSVSDGTIQRARTGRGPDPLCHPAFANDPLTREVKHYADKALAINTKRTYHAGEKQFIDFASxIGCFDSHGDIFPASE
STLIYFVTFLARRVKHGTIRTYLAAVRNMHIENGFQDPIQGRLILNKVLRGILRVQGQHKTARQPVTPQLLKAIRPVLLS
WLSAHDFHMIWAAFTLAFFVFLRCSEFTCPGVRNFDIVYNLSPVDINFHPNPSAPLYMKVAIKASKTDPFRQGTVLTIAR
SGCDLCAVSAMQEFDSHLWVFRFRSGKYLTRSLVSSILRDAARACGLPHSSLKGHSFRIGAASCAAAAGLPDWLIKVLGR
WSSDCYQLYVRTPQNILLTAAPKMAIVQPVTLT
>BEL8_AG#LTR/Pao 147-5375 [Anopheles genus]
MPAQPLILSSRRTILIAILARYEEFLQNYQPDRDSIEVETRMAKFDQICKDLENLQQQLEDSATTAEEMTHNAALREDFE
RRLIRVQSALKAKYREIPRSEVSQQGAGRNPLQGIKLPTIALPEFDGDYMQWLTFRDTFECLIHDNVDLPPIQKFHYLRA
ALKGEAAQVIEAITISASSYELAWKTLAERYSNEYLLKKRHLQAMFGITPAKRESATTLHQLVDEFERHKKTLNHLGEKT
DGWSSILEHLLCTKLPSNTLRDWEEFASTNDNPSYDSLIAFLHRRMRVLETLLVNKPEPSPIETPIPPRRTIFPRTASFA
TTDRDVNKCPLCNMPHTITKCQRFNAMNPAQRYRKVLDARLCLNCLRDNHRARDCSSQYKCRHCNLAHHTMIHTESTPST
SSTTFPMLAAQDEPSHTTHATDDHTASIQRSYAAAIKQSPSQILLQTALLNVTDAHGILHPVRALLDSASQPNLMSNRLA
QRLALKGSTVNITLKGAGLSTRTVRRSVRAQIASRVEHFDLDVDFLIVDKVIADLPAHDVSTRGWNIPSEFVLADPQFDK
SAPIDLILGARHYASFFTNVKSHELAPNLPTMLNSVFGWVMIGPTSPQNPASPTDCTAASTIVCMASLEESLERFWKLEX
LSVNDSYSPDERRCETLYKETTQRDESGRYIVRLPKQTDFTEKLGLSKTTALRRFELLERRLERNPQLKEDYHAFMKEYL
ELGHMSLMNKDSGDERAYYLPHHPVFKASSTTTKVRVVFDGSAKTSTGYSLNDILCVGPIVQDELLDIVLRFRTYQIALV
GDIAKMYRQILLHSDDRRLVRIFFRFSPQAPIQVYELNTVTYGLAPSSFLATRTLIQLADDEGTEYALAPAALKRNFYVD
DFIGGANNVREAVQLRKELSALLAKGGFELRKWTSNNLSVLSGLSTEYIGTHSSLHFIPNETVKALGISWKPESDELCFE
SNTEADEATSTKRSILSSIAKMYDPLGLIAPVIVRAKMLMQELWLLKSGWDEPVPNHICKKWKAIQSDWKTLSEYRTNRY
ALLPDATVEFHTFTDASEAAYGACVYARCENAAGEVRISLLASKSRVAPLKRVTLPRLELSAAVLGAHLHHRVKEAMQIV
CAESFFWSDSTVTLKWIASPPNSWKTFVANRVAEVQHYSHPRQWRHVPGTSNPADLVSRGMSAAHFTQNQLWNNGPDWLV
QPSSHWPSSDPEPSDEADLETRQVSAALVCTQTHPWFGISSSFTRMVRIIAYCIRFVRNTKQKARSQRPIPHTNASKTIT
PKYVDAAKTVLCRLAQQDAFSAEIKQLKKGEALMKQSPLRKLTPFLDTEEVIRVGGRLNLSQLPYQSKHPAVLPKNHKFT
RLLAEDYHEEMKHASGRLLLSRIRELYWPLDGRRLVKSIARNCFRCIRQDPALARQPVGQLPPSRITPSRPFSVTGVDYA
GPFYLKPAHRKAAATKSYLCVFVCFATKAVHLELVGDLTTAGFLAALRRFTSRRGLPAHIHSDNGKNFEGAERELKELFE
LFNDEQHRNTVATRCADRGITWHFNPPKAPHFGGLWEAAVKTAKRHLYRHLGNTRLSYEGYCTVLHQIEAAMNSRPLLPL
SDDPNELAALTPAHFLIGTSMFAVPEPDYTQLKSCTLDDLQKWQLLVQRFWKHWATEYLQEMQKCYASGGSNNSNILPGR
LVILMDESLPTTRWPLARIVKIHPGEDKIVRVVTLKTAKGIITRPITKICVLPLRTDSENHV
>BEL-3_NV#LTR/Pao 73-5278 via tfasty with BEL11_AG_137-5269, 1 frameshift. [Nematostella vectensis]
MEKLTKELEAKLKTLRFRVLKTNDVLTKDKQALERHYNSITNGINAVSDIKEQLEEKKFAKGESEEEIGQWGESVEKELE
DADSANAKLQAAIQYAQKEEEDKRCHESHLKQLKYQQELLQQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTITKFNG
KSENWLSFWGKFSCEVDATNASPVTKFAYLKEYLIHEIRQDIDGLPFTAEGYEKAKTILKEEYGNSSDIINIYIKNIMDL
PVITGTSPRKVKDFYKTLRFNVQSLETLGRLHDVRGNVRGTLDKLKGIKSDLVRGCDGWRDWGFNDLLQQLKRWTEINPV
ESNFEDKTKSNNSQQARSSRLYQTSTVNSSEDQRAVNNLTCVYCGGAHKGVDCAKVTDIKERKRILVKEKLCFNCTKGKH
RAEECKSKSNCFKCKQRHHTSICDSDVKSNSNPLLVTAGVPVGQVVYPVVIVDVEGIKCRALLDTGAGSSYASAALLDRL
KKRQVTREVRKIDMMLGSTTREVELANITIKAVGGSDYEMGVEVTKVNKGELLFIDNPNYNKLIGEHAHLNQVNVQDTST
KDKLPIHIILGASEYAKVKTETAPKIGMPGQPVAELTRFGWTIISPGKEPIDIDMLACQTTQVDYEELCKLDILGLKDTP
TNSQDTVYQEFKEQLARDENGCYETGLPWKGDHPPLPSNKAGSLQRLASLTKKLERQDLTAKYAEIIEEQITEGIVEAAE
GPSIGREFYIPHKPVLRTQAESSKLRIVYDASAKEHREAPSLNDCLHKGPPLQNKIWDVLVRGRFNTVAITGDLQKAFLQ
VRVRECDRDAMRFHWRTNEHSPVQTLRFTRALFGLAPSPFLLGGVIEAHLDTWEDKEPEVVSRIRKELYVDDLISGASTV
KEARELKEKATQIFKDAGFKLHKWHSNAKELESEGPASEDSTYAKQELGVPVNEECSLLGLGWQTGEDKLSVTIPQGNFA
PTKRGILAKLAKVYDPLGLLSPTTLSGKLVYRSVCDAKMAWDAPISDELKKVWSKWENSLPQRLKVPRSLVTHREVIKSI
ELHSFGDASAQGVSACVYAVVTQESGVNQGLVAAKARLAKQGLTIPRLELVAGHMAVNLINNVKGTLDGLPVSGLHCWLD
STVALYWINNQGDYKQFVSNRVHKINSHQDVTWHHVPTKDNPADLGSRGGSVVNADMWWKGPEWLSEPGCWPEGIVLEQS
VESKAEAKLVRQVLSLAVAERNEIDELLEKYPLHKAVRICCWMRRFAYNCQSRKKGVKKRTGPLLTEETEIQRCFWIKQA
QNSCDLSDDRIALNLQLNGDGLLECRGRVQGQYPVYLPHVHIYTQRIVEEAHLRTLHGGVGLTMAKVREDFWVPRLRQLV
RKVRKKCHGCKRFQAVAYSTPPPADLPVTRTQGTSAYQVIGVDFAGPIKYRVARQKEEKAYVLLYTCSLTRGIYLDLLPS
LETPDCLHSLKQFIARRGRPDRIYSDNGRTFVGAEKWIKQVMQDERLQDSLSVNQIRWQFNLSRAPWWGGQFERMIGLVK
ASLHKSIGHGMLYWKELQEILLDMEITLNNRPPSYIEDDVQLPLLTPHSLLFIKSNTLPEIQAHHIQDTDLRKRAKHLIK
CKDAVWKRWTDEYLRGLRERHRAKAGAPDTKPTIGEVVIVKSEEKNRGKWQLGIVSSLITSKDGEVRGAKLRAGKSYIER
PVQLLYPLELKVDDVVRPQPDERLRPNAAEFRPRRDAAAAARLRMQGIADDAENL
>BEL-3_DMoj#LTR/Pao 2825-7672  [Drosophila mojavensis]
MKDYEKLGHMKEVTPQMVPKSHYFIPHHCVLKPDSSTTKLRVVFDASAKSSSGKALNDILYAGPTVQSELFSILLRFRTH
KYVFTADIEKMYRQIWMNPADQFHQMIVWRNSPQEQLKYYRLKTVTYGTTSAPFLATKCLQHLANSSKDQYPVGAKAVEY
DFYVDDCLTGADSITEAIRLRDEVNKILLPAGLRLRKWCANHDQILAGISKEDTTQMVKLDNTEDNSIKTLGLTWSPKSD
SLHGRAEAAKATKITKRVVCSELAKIFDPLGIFAPVVVRAKIFMQQLWESKIGWDEELSPSLQQDWKIYRDDLQSLNKLK
IPRHMFDGKIPVAREIHTFVDASEKAYGAATYIRATYKDNGITVRLLCAKSKVAPLSRQSLPRLELCAALLGAELTARVR
KDLNMKSSCNPAYLWTDSRIVLSWINSQSSSLETFVANRVAKIQELTIATQWRHVSSQNNAADILSRGTLAKNLDSTTLW
LHGPLFLHGSPSKWPEPFVKMPSANDTLGRKGNPRAVAAPVAKTCDVIYSINHNNSFRRLQRIIAYIMRLRHPNKNGNTL
THEELERARIVILRKIQQVDFPZELTNLTKHGVVDSKSNLKSMTPFLDKDNIIRVGGRIEKSALSFDEKHPILLPHNDPI
VKSLLRELHIDNMHCGPQALLAKSRQNYWILKGKTLARNITQNCVRCTRAKPKMFQQLMGNLPELRVSPARPFKNAGVDY
CGPFWIHHKVRGRRPDKAYIAIFCCFATKAIHMETVSDLTTDKFIAALKRFMGRRGNCQTLHCDNATNFVGANNKLKELE
DAIYSDKAKDSILAECHKTNVKFHFIPPRAPHFGGLWEAAVKSAKHLLLKNVSTASLTYDELETVVIEIEAILNSRPITP
MSTDPNDLAALTPGHFLIGEPLTAQAHDAEREDGRSLGQRLELIQHLKHTFWTRWSQEYLHELQQRTKWTRSTANVSEGM
LVLIKEDNVPCRQWPMGRIQRVYTGPDNHIRVVDVKTAHGTFKRPIHKLAPLLAIDEPQHKHPLEDISQNDPSANQKAKR
LRTPWTPSLTTMLLTIILFLPLILTQSINITYFESKPGIYYERIGSARLAVADWTIIAYYDLEPYWNEMKTFSKGTNSIK
KLCADLSITVPCQSVYQHFKHVENELLAENELLQQARPKRAPLDIIGNIASSLFGVLDSTYAKEMSETILKVKQNEDYLV
SVLKNQTSFVDSTFNVLKRDEATIERRLNNMEDQLNAMITEKAQHNLFHWYISLTTQLTLTAANLQRMQTEIIKVLTDVR
HNTISPLLLSPSQLRDQLEQMKDHLKIGQQVPSTNGNVLQLYKMMQAEGAIVNRHAVFKITLPLISTQILELYNLIPIPV
VSSRGITKISISVPLIAVNDHRDEFLSLTHEEFRHCHPLQASEHICYHKQSLFRMEHCCEFLMFNNKTSDNCKTSTTNHS
LSWANMFFKNQWIFATRTPMDLSAVCPDGTSSIGLRDAGLLIMKSGCNIRNADMIITGHSTSTSTMYSSYMRFGNLTTQP
PHQNPSLNKSRELLEANNLKNMHLIPAPEIQLPQWISPINHSVIMSYVALAASLILLALYFSRRINQAGPTTPRTQDGIS
APAIGQDAFRIDISDS
>BEL-3_NVi#LTR/Pao 404-5479 via tfasty with BEL11_AG, 1 stopcodon. [Nasonia vitripennis]
MDALVVQWNNQTEQLRDLLTDLSIVIKSKSAVLHECKARMEEIVMHYKTLGNLFYKLDAVHKEAEREKFNDLKNFYFKVT
AYIRSAEDKQSKTLGSDTTVPLGHSTLLDISRFSGLPTIDLPKFDGRLEKWNAFKTTFRNEMVRLNIDNITAFHYLKKSL
VGAAANSLHILDPSDGSYDEAWRLLGTQYEHVRLIAASHIDAILYYPVITEVSHRSLKDMETSVRQHLADLKSLKVVPSD
YFVIRTLERALPTNIKDKWIKRMSIDAIPDLESFFRFLQETSNYLYAQEGESKDAKASAKRTVAQSEKGTKFRRGNGQAR
ALVTSSSISCYYCSGEHTIYRCSSFAALSVQQRWDAVRTKKLCRKCLRTHEGKCESRNCKKCDKDHNTLLHEERKTDSSG
KKPxLGVGVLSTVSRALQSQLMMSAVVLIRDADGAYIEARALLDTCANANFMTADLAKRLRLPTRPCSIPIGAINDLRTT
TKHCVDAQFKALHSDFNKRLTFLTVPNITSVTPEEPFPRDSIRLPKNIRLADPQFHLPRQVDILIGSGATLSMLSIGQVN
LSREGSELYLQKTQLGWVIVGGIDTDKISTVSCHLSQLEKQLVQFWSLEKCSSPVEQADDRLECEKWYVDTTVRLSDGRY
MVRLPFRKKDPVLGDSRAQALKRFRGLERRCSRSSGMMEEFSRVFQEYLDLGHMSLVVDENDSEYYLPFLIVVKILSLTT
KFRVVFDASAKSSLGVSLNDLLHVGPTIQDKLYVHLVRFRSHRYVLTADIEKMYRQILIHPEDRRYQRIFWYRDGKLQVY
ELNTVTFGVSSAPYLAIRTIHRLADDESAQYPRAAEILKRDMYVDDLLTGSDSLDEIMKARDEIITVLKHGGFNIRQWAS
NHNHALDNLDEKVLSLAPDGEDAVLKTLGVSWASKRDELAIVVKPVEIPPNVTKRVILSEIAKIFDPVGLVGPVGLHAKW
IMQECWKEKVSWDESVPQSLFTLWMDFASQLSSLSSVSAPRHVVCVNPSRIEIHGFSDASKKGYGACLYARSTDKDEKIT
VRLICSKSRVAPLKEQTIPRLELCGAVILVRLLLETLPALEFSIDRIVLWSDSTIVLHWLRKSPQDLKLFEANRVREIQE
LGERASWRYVPTQHNPADALSRGQLPKEFLRNETWFTGPTWLRQTEASWPANIVESSPDIPGLKKGVCLFVDSAKDRMFL
SRFSKHRMMLNVVAICLRWLPSGRQYRGEPITVAEKRDAETRVFRSIQQDAFSDSIACLTKGIQVKGSHIAALNPCLDAN
GVVRVGGRLKNADIPIASKHPILLPSRNHVTDLIIREAHESNYHSGVQSTLFYLRQRFWLIDAKNQVRHVIRECVTCIRH
KPPPIHCKMADLPTARVTESHVFSHVGVDFFGPLSIKEKKRYNRTALKAYGCVFVCMATKAVTIEITSDLTTEGFLGAFA
RFVGRRGIPQHVYSDNGTNFVGANNQLRELFALLNSEEFKSKVNAKALSLDIQWHFNPPLSPHFGGLWEAAVKSFKHHLK
RVVGGQLLTFEELYTLVIEIEAILNSRPLWSISADPNDPIALTPAHILIGRPITVLPSADLTSIPDNRLSIWKFITKARQ
DFWKRWHLEYLHELQQRQKWHDSTGELRKGMVVILIDKNQPCTQWQLAVVQEVHPGTDGLARVATVRTSRGTLKRNITQL
CPLPTSSTEEAE
>BEL-4_DPu#LTR/Pao 1859-7768 via tfasty with BEL5_AG, 1 stopcodon. [Daphnia pulex]
MVQTLKNSRASTKGHMTRSIGLINGYANKVMTQQDVNSLDVQEGKLKGLFETYVTASREILEMLKASKAPQQELDDEQTN
TLQTQEEVLGARAIIKQNKQEWLDDERDRRLLALVQTSNQAANQASNQASNQATSQAQMAQLIAQIVAAIPAPPAPVINV
TAAPAPASAVQSIRLPQRQIKHFRGDVLEWTQFWESFNAAVHSSSLSNVQKFDYLKEYLKGEAYLLVNNLELTDANYQVA
VDELKRMYGKTDVLIDAHFEKLDALQPVKDGNDVPALRSFQLNLQSHISALETLGVPTSSFGGLLGSRLIKLIPSRLQLE
WAKSATNKTTDIEMVIKFIGEQIDAAERYNRIKGVEKEKSSPAPKQPKPANPPPATASQLAVGAKASPAPQVKSSLKTKN
VKFNPSWIVCERPCIFCSEIHWPTKCPKGLAERKKMIFDLKRCVNCFGDKHALKDCTSTRNCNKCGGRHHTALCDKGDVR
VSNPTTAASIVASNPTTTTTACASTFGQLMLKTATVIISGQNGNETRAILFADDGSHRSWVLKSLSSQLNMKTVAVENIS
TRVFKKKEPSKPEMTKNVEMQVRGTWQGAPKVTLMALESDHIADTGSYVGSEFASSLWIQNEKLADDRFEMAHTEEQPIG
ILVGMDQMFQIMSNEAAIQSPCGLRAFQTKLGRMIAGPSQEAKSKTGTQVIQNLILTSSYPIPQITSTFAASSQKRKILP
TQANKTPMEKETGTASLQTPPLGASFSDAPIGSSGEADSKWFEKEEQVATNFDLSLFWKIENFANLEGADAVELENRFDF
FDEKITRxPDGRFCTPIPWTTDKWRLQKNLPLATGRVESTITRLRKNPGDLVNYHAEIQKLIDSKFVEEANMDYEELHTY
LPHHPVFRGDKSTTKIRPVFDGAAKTKFGPSLNDVLETGPNLNPDLLSVLIRFRKYEIAWIADIEKAFLNIALQPEDAEA
IRFLWPRDPAVAGSPLIAYKWKRVPFGLSSSPFLLRITINKHFKSLKSRFPETIQQLEENLYVDDYLGGASNLSIAKKRV
DETDEIFSDAQLNMRSWATNNEDLKQHLKEKGLSIKVVGLLSPALDGQQKVLGIRWDTGSDSFKFDPASIIQAVEEVRAE
ITKRKILSISARIFDPIGFLSPTVLLLKIIYQKLWEKEIGWDQAAPTDIQKSWKIVMTGLTDFTELQIPRWIGLSEKVTS
HEIHVFGDASEAAYGAVAYARFQRGQEDPCIVLLASKTRVAPLPKKKVTLPRLELLSSLLAVRLGEVVKNAMQIQYWRTI
YWSDSLVALGWIRGEPNKWKPFVQNQVETIRKFSQPEWWRHCPGLQNPADPAPTLVTSTLWWNGPIWLKGEEAEWPDSPN
DQIPQTTQSEMEAEARSTTVSTAAAIAIPTATVEWNLDKISTWNRLLRRTAWVSRFHSRSQKKLRPPGPERMESIKANGK
VIRITRLSREELDEAELTIYRQLQRERYPKAFESLQLDNTIQPKEKIAALFPIWDARDRLIRIHGKVSLALRDRNIDPPI
LLPASHIVITFLITDKHESLLHAGAKVTLSELKEKFWIVKGRQQVKKILFTCVECKKLTSPPFQELAAPLPLNRLKHAQS
FHVAGVDFAGPLLYKPAQRRKKRKAPSGVQDPTPADDPTEEQIEEPPTEGDAPIEAPIVGEEDSIEEDVEIQDILTTTTK
AKKTNHLKCYVCLFTCAVTRAVHLEILPDMTARSFLLAFRKFAARREPVSVMYSDNAQTFRCVERFLRTIHADPVIQDFL
ASRKTLWIFSASLAPWWGGFWERMVRSVKDLLRRSNGRACLDYMELEASLAEIESVINARPLSYIGEGADDPLPITPNQF
LNNRRSTRADPEPAVNLLAPTSTSIVLQEMDKNRREYVADICARFVDDYLLQLDNFHSKGKSGRKIRLGEVVVIHDEHSK
RLMWSTGVVKELIPSRDGLIRSVMLKVPNGNIINRAIQCLHPIELREDLA
>BEL-4_DMoj#LTR/Pao 526-7478 via tfasty with BEL-21_DTa, 1 frameshift. [Drosophila mojavensis]
MLSEKVIKLLKMQSDLVSRLKKLDSSEEIRPPSEILGELEKIKEELENNHTLLLKVGVIDHAYFNNKEFDKAMKSIQDLK
LEIMRAEKEEDKDVKHVRAVTVHKSSEEEVEFESKVEQLKLYLVEVYEDIAKGNVGIFEIRKNKIKYLWNKVSKLVQELR
NKYVSNKMFDEEVNELDFDVQNAISALEAKKGTPIQPIIHEKMDNLPGLPKIQVPIFFGDVKDWDLFAELFCDLIDRRED
LTPSIKFSYLKSSLRGEAKSMVAHLLTGSADNYSTAWELLTKRYENKRKIFSEQLNRIMDLPNLNIDSSKSINYFIDTIN
ESIHIIKSKAQLSEEVDKIFAHIILRKFSKEALQLYESQIKKTKEIQLLTDVMDYLDQRHCSLSTSNKEEKKIHSGYNCP
ICKVVGHSTTQCTKFKAMVPRERLDAARKIQLCLRCLRHTNTNRCTSSMNCYFCKKPHHTMLHINTEKVNTVVTNEEALL
ATAIIKVKAIKGNYINLRALIDSGSQKTIISEEAAQLLNLPRIRNETEISGVSSENTCRSKHKVKLIIKPREPNKEQFRV
EAIILSKLMKALPVSKANIDMAQWHNFTLADPQFYKPGRVDIIIGADLYPHVLKDGIVKIDGLLGQKTEFGWIVSGCTKS
KGKTTIVATSIAIEDLDRFWELENEEEEDVKEIEFCEKNFQNTTKIDSRGRYVVTIPFKEENELGESKPQAIARFLSLEL
RTDYTNFMNEYLQLGHMISTNKEGKYYLPHQAVLRDSSLTTKLRVVFDASAKTTNKKSLNDIMWTGPRVQKDIFDIILKW
RRWEYVVSADIEKMYRQIKIAKHDQEFQYIVWRDSPSKKLKNFKLTTVTYGTASAPYLATRVLLDIANNCNNATIKEIIK
TDFYMDDLMTGAESIQNCKEIVECVSSELAKVGFNLRKWISNKSEIIEEIDRNEENKVLSIEENESIKTLGLQWEPLKDE
FKFSFTDNNIKTINKRTVLSTLAKIYDPLGWLAPVTIIGKLFMQKLWLTDKKWDEELSKEEIKEWKEYQDNLKHLQNLRI
PRWVKIQKDIEVQFHGFADASEKAYAAVVYAKVGNSVMILASKCKVNPKKNRKTIPKLELCAAHLLTKLISKITESIKIN
VEIFAWSDSTITLAWIQNGLNKNKFIRKRTDEIRKMSEIKWNHVKSEDNPADIASRGINTYKLVECEIWWNGPKWLAKSK
NHWPKEEENVDEEKISVNTMIENSEKNIIGELIKRYSCMQKLQKVVAFIIRFIKIITKKTIQKPQKYITVEELNNARILI
IKQQQACQFRTEIGKLLGKKYLQNKSKIISLNPFLDEKGILRVGGRLEKASIGFDVKHPIILDKCHLVNLIIKDAHTITL
HGGINVMRNYIQRKYWIIGLRNCLKKYLRNCITCTRYNHTPTQQIMANLPMNRITMSYPFLNTGIDYAGPYYMKCSKYRG
QKMYKGYIALFVCMATKAIHLEAVSDLTSDAFLAAMRRFIARRGKCLNIYSDNGTNFVGAAKKLEKEFKKTIQENTKISS
TLEKEQIKWHFIPAASPHFGGIWEAGVKSVKYHLKRVIGDSNLTFEEMTTLLCQIEAVLNSRPLYTTGDDIDNIEVLTPG
HFLIGRPTVSEVESTGEEKIGNLDRWKLIQKMRRDFWNKWKNDYLYTLQQRNKWKKEMPNLEEGQIVLIKDENCHPARWP
LGIIKEVHKGQDNKVRVVKVKSQEGLVTRPINKVCQLGELKNEDSDLRSTRQSSRGKGGSRLKVLMAMLVLALFCQVSSA
EVTKSDKITISKLGNNSAIYLDPMGEVEIVTSSWDLIIYYNLDSYFDMLKKGSELEGKMRAVCTKLQSFEDQCNIILNNT
KRRIAELEDNNKLFILQNKPRTKRAPFEFMGSLYHLLFGIMDADDREQMEENMVSLLDNQHNIKKLSEKQTSIIDSTANI
LKRTTEEINIHFNDMNIRIDNMTELLKESYYVYKEAINFFMITNQLNALIEECDKIQTGVINMLIDINHSRLSPVILKPY
QFGEEIAKIKESLSENLVLPGKRTGTELKEIYQLLTTKGTFIDNKIIVNAKIPLFSRYPSHLYKVIPIPVYNDDQMIMVH
QRTEYLVYNFEIDSYHLMAEATLNKCKKWQPNKLICEGNWPWDNANDNSCEISPFKPNRPANCIYQTLVHSKTYWVELEG
KSRWLFKVPINEKLSVRCKGAQQELIELPEQGVLKMKSDCTARSGDKTIIAHNNDIHTEKYEKIAPSYVGKIVDVPKIVW
NPLALSRINHTKEIEHLQIAIQQMKESHIELKGLHFHHISGHASMLISILIALILIIYTIRKCNVKRRLKAITFPGPI
>BEL-3_DGri#LTR/Pao 825-5343 via tfasty with Nobel, 6 frameshifts and 4 stopcodons (internal deletions). [Drosophila grimshawi]
MSHSLEDYRRQRANTKRNISRKKILVDGQSADSSKRSPADLQCRLGILESYFKQSLAIQSEIETLYPNDNACAELEDNYV
HIKLAIKKLLSEDLNSTVTDDATSHVAYHPQLSRLPFLALPTFDGNHLEYKNFICSFNQIVKGAQITNIEKFNYLLSCLK
GVALECVKAFPVTNENYAKAFAKLKSRYDKPIETISSIFQLPSASSSNATQLRSLIHNASALFSSLSSLGSGIDIARVML
IYVVLDKCDQETRNKWNLSLDYTKIPSxAQCVQVLERHCQFLLSKGTTINQTYSKQFRNPGKGHNSSFALAIAACALCSS
STHKLMACEQFKALDALQRFDVVKRHRLCLNCLSKGHQMADCPSTNRCRHYQKSDHTLLHKKLRSTTQPSSSPATEVAHN
HSQIKKRYQSHVLLATAMILVRDSTGTYRLGRALLDSYSQVNFVTDSFAQKLRLKREKHVVQISSIGHARTEITSLTTIS
IRSRLSPFEVSLDLCVTSHIAYQPDINIDISRWKMPQNIVLAGEKFYQSRHIDMLLGTEAFFDILSVGQVKLDITGPMLQ
KTLFCWVVTGKCHPQQSREIAASFKLGATSIDDHLKRLWEIESIETSNVLLKPEHRACEEHYLKTTVTNDSGRIVVRLPF
KNNPSQLGHSFDIARRRFLSLERRLAQSSGLRLQYCQFMEEYEHLEYMSLVTEPHLSEPHYYIPHHCVLKPVFDVSCxTS
NQTSLNDHLLVGPTLQDDLYLLLLRFRLHRYAITVDGTKMYRQVNVDLNDRKYQYILWRALPDEPLRTYQLNTVTYGTAS
APYLTIRSLHYLANLCRTEYPIGAVIESSFYVDDLLSGGEDIETLRTIKDQVTKILHRGHFPLSKWHSNHAQFIENFAIK
DINTCDNGLTSALGVSWNQHTDMLLFNFKPKIVSSTVTKRTILSIASALFDPLGLVSPLIIVAKIILQELWIAGLTWDES
VPQHLELAWKKCLESFQTISSLAVPRYCKQVNQSSFQLHGFCDASIRAYGCCIYVRSESACGNIGVHLLTAKSRVAPVKK
KSLPKLELCEAHLLAQRRATCRIFWSDSQIVLHWLKxHSDTLSTFVGNRVSESWRFVPTTSNPADIVSRDATTSDLQSSI
WLSGPAFLTQYHEHWPTSSNISNIDMQVINAEQRKSTFVATTDRNHVLEKLANISSYNRCVRTVAYMLRFVQITHMNLRN
CHAGLKAFVALIRLEYxIVNARDLARRIVHTCMACVRYKPKLERQLMGSLPVERLQSEHPFQRCGIDFCEPINTYVRILG
KGPTKSYLAVFICLASKAVHIEVVCQLSTKTFLAALKRMVPRRALPTDIYCDNGTNFVGAANELKALKQFLFDQSIQDAI
SEYCASDFVSFHFIPPRAPHFGGLWEIAVKSARALSNTRITFEEFCTITTEIEAVLNSRPLSPMSPDPNDLSVITPGHPG
PNQMDIIVVKSRYWNHDDNLPPQQWKLGRIEALVPGKDGHVRAVHLRIANGICCRPVHKLAILPMEA
>BEL18_DR#LTR/Pao 152-6067 via tfasty with BEL3_Cis, 2 frameshifts and 1 stopcodon. [Danio rerio]
MEMDEDDQESERPLQMENEGNMETDIKGAIEQKDKNTSEEQCHVQESTELPRRSERPHIPTEKMLAYQKEECRKKEKKLT
TLYEQWKLDARKARQDLKADISDKQLADIADSLEDKRNGIMKIFIDIREFITPAADLRRKIDACDAVTNDIVKIVLEKIS
NVDEYDAERERGRLSELLAHSYARSIFGSSASLMSVNSHSGSSRTARKRADAAAELAAKEAEYKMMQAERQQKEKLRNIE
EQFKKDLETQRFELECLQVEKDIEVARARVKSYDEEIKEETRNQSIKSEKQGPRNERQLQESYVLQSASLSEVSHLAQAV
QDSIAINRLPLPEPTVFNGDPIQFVEWKSSFMSLIGKKGISAADKLYYLKKYVSGSAHRYLEGTFYRNDEEAYKDAWDKL
NKRYGQPFVIQRAFREKLSKWPKIQSKDAEGLRTFSDFLNACLQAIPHIKGLEILNDCEENQKLVQKLPDWIASRSNRQV
TKTLMDDKEFPSFHDFVNFMTTEAEIMCNPITSLHALHSCESPYERRMSKETKRSKAIVFKTQTSVNNDTQSTVKGKFTM
TKTQCMLCQDDSHQLHKCLKFMEKSLKDRRAYVKDNKLCYGCLKSSHHAKECRRRHTCDVCKLRHPTCLHDYNYDKDGIR
ExPLPMVSNVHATESETTNAMSLNITRESQSVITSMIVPVWVSSVKNPSNEQLVYALLDTQSDTTFIDKDISNTLQVESH
PVKLKLTTMMGDNEIIRSNRVTDLQVRGYSSSVHISLPPVYTKECIPANYDHIPTQKTAMNWSHLKGIADEMAPLLNCEV
GLLLGYNCPRELAPRQVILGKNEEPYAILTDLGWSIVGCSIPSINESTRFSLCQRIATKEIPAMTPGDAVRILESDFKDI
TVDDKTVSQEDIMFLDKLKVGIKKNYLGHYEMPLPFKQRPSLPDNRELASIRLQHLNKKFSKNEKYKTDYFTYMNDIIDR
GDAEVVNEDEGTSGEKWYIPHHGIYHPKKPDKLRVVFDCSAKFKGTSLNEHLLSGPDMINNLTGVLVRFRRHPIAVICDI
EKMFHQFHVQEKDRDYLRFLWWKDGDTNSVLQDYRMKVHLFGAVSSPGCANYGLRYLANEYSQSHALGAQFITRDFYVDD
GVTSAETVEKAIQLTKEARELCAKGGLRLHKFVSNDNTVLQSIPESERAVNFETKDLTFNEMPLERALGIHWNIQSDGFK
FHVPLKGQPTTRRGILSTVASIFDPLGFVAPFVLNGKRILQEMCRQGTGWDDTLYPALKPRWERWQNDLVNLENVNIPRC
YVPADFGKVVKTEMHHFSDASTCGYGQCSYLRMINEDDEIHCSFLIGKARVSPLKIITIPRLELTAAVVSVSMSNILSEE
LNLIDVDKFFWTDSKVVLGYINNDARRFHTFVANRVQKIRQSTTPNQWLYVPTYENPADNASRGRRINELLSSNWFSGPS
FLWEKEITTTNVVPDLPVGDPEVKKIQTLHTKTMENKDFVDRLSKFSSWSKTIKAVARLLRWIKKDKTNSPASVSEQEDA
KCLILKGVQRQVLSQGKRLPSHSKLHHLDAFIDKDGIIKVGGRLDHSSYTHAFKHPWILPKEHHVTKLIIAHCHECVKHQ
GKGFTINNIRSCGYWIPGISRVVTSYILNCVTCRRMRRSAEGQRMSDLPSERVEPSPPFMYCGMDCFGPFMTKEGRKNHK
RYGLLLTCLCSRAIHIEMLEDMSTDAFINSLRCFIAIRGTVRQIKCDQGTNFIGAKNELNSALQELDPERLTTFLANKQC
DFVLNAPHSSHAGGVWERQIKTVRSVLNATITLSAGRLNDASLRTVFYEAMAVVNSRPLTIDNLNDPKSLEPLTPNHLIT
MKPTTALPPPGKFIREDMYTKKRWRRVQYLAEQFWSRWKKEYLHNIIARQRWHAPKRNLQIGDVVMDIEETLPRSEWRLG
RIIETVLSPDGLVRKAKVALGDKRLNKKGKRMHKISIVDRPAQKLVLLLEAE
>BEL12_DR#LTR/Pao 465-6350 [Danio rerio]
MSKSDIGSKKHTKQADIETRSENTRRSTRAQVPTEKMLAYQQEEQQKKKKKVISLYDKWKIEARNAREQLKSDLSDTQLA
ILIETLEIAKNKVLSAYDEFRKQTLPDVEMRRKMDSCEAVTTDVTRIVNERIAGIDGDYSYEREKERLSALSYKYANSIF
GSTASQVSQEISDHSGHCSVLSDLEAKRVDAAAEVAAKQAAYNSLMAETKQKEKIKELEDQHKKALEVEFKELEQIQAQK
DLKVAQAKLDVYSEEVEKITSSLNDCSSASGSELSQGNERKEVNRQEQNETTNPSVKASTSEFSALVQALQDGISASKLP
VPEPPIFTGDPIHFIEFKQSFMALIDKKGISSADKMFYLKKYVSGPARKALDGTFFRTDDEVYKDAWDKLNHRYGHPFII
QKAFRERLANWPKIHPKDAMGLQAFSDFLNACRGALPHVKGLQILNDYQENQKLMQKLPDWAISRWNRQVTQSITNNHEY
PTFDEFAVFVSTEADVACNPVTSFHALHNSGYTDEKVNMKEVKKNRVRVLATQSNTEGDQYVIKSSNKTQCVFCQKNNHQ
LDNCSKFLSRPLEERRQYIQEKKLCYGCLNFGHSAKVCRYRLTCDTCNKKHPTSLHNNNFVKMVRTSSSAVQTQNDPEGT
ANAVTLNVAGEEPGVCTSMIVPVWVSAKHNPSCEQLVYALLDSQSDTTFIDKSVSDSLKAASFPVKLKLTTMLGRDTVLQ
SERVTGLQVRAYKSSDYIDLPATYTKDCIPANRHHIPTNEVAEHWKHLSVIADKIPPLQDCDVGLLIGYNCSRSMIPREV
IVGGDDEPYAVQTDLGWSIVGCSPRSDLFNVSRLCHRIAVRELPSITPVNIIRALESDFKDADEETVRVSQDDILFLEKL
KSGISKNIHGHYQMPLPFKVRPKLPNNKRCAMVRLDHLKRKMVRDESYMKNYNQFMSQIFQRGDAEEVHSSGKEGETWYL
PHHGVFHPKKADKLRVVFDCSARHEGSSLNDHLLQGPDLINSLHGILIRFRQHPIALTCDVEKMYHQFHVDEPDRDFLRF
LWWKNGDITQPVHEFRMKVHLFGAASSSGCANYGLKHLATENGELYPLGSQFLLKNFYVDDGVISVENVHEAIKVADEAR
RLCALGGLRLHKFLSNNELVLKGIPQSERMCGVRGLDLAFDELPLERTLGLQWDRESDCFKFKVHLKEQPASRRGILSAV
ASVYDPLGLIAPVLFNGKRILQEMCKNGSGWDDPLMDGLSLRWVKWKQDLQSLQNLSIPRTYVPLNFGKPISIELHHFSD
ASNDGYGQCSYVRVKNEEGNVHCALVMAKSRVAPLKVVTVPRLELAAAVVSVEVSNVLKRELDYPVANETFWTDSKVLLG
YISNEARRFHTFVANRVQRICRSTKIEQWRYVPTERNPADYASRGLTVKQLLDSDWFTGPKFLWETEMFIPSEPAPALLL
GDPEVKSLFTLNTECQNSFNLANRLTKFSSWTKAVGAVARLLRRANKDRSSSLSTMLERQKAELHIIKCLQESSFKDELK
EIKGGRGVSCGALRPLDPFVDLDGVLRVGGRLTRSSYPDSVKHPIIIPKTHQITQMIVAHYHNKVMHQGKGFTVNEIRSN
GFWIPGINKVVASFIKGCVVCRKLRRPVEEQKMADLPPERVDPSPPFLYTGMDCFGPFSVKSRRNVQKRYGLLLTCLCSR
AVHIELLNDLTTDSFINALRCFIAIRGTVRQLRSDQGTNFVGARNELKGALCEMDPERITTFLLENQCEFIMNTPHASHA
GGVWERQIRTIRSVLNATFALYPGKLDDSCLRAFLYEAMAIVNSRPLTVDCLNDPQSLRPITPNNLLTLKPVTALPPPGK
FLEEDVYARKRWRHVQYLAEQFWSRWRKEYLANIVTRQKWNMPKRNLQINDIVLVKEENLPRNEWKLGRIQETISSGDGL
IRKAKVLLGDCKLDAKGKRTTKQSIIERPVQKLVLLKEGNE
>BEL21_DR#LTR/Pao 65-6025 [Danio rerio]
MQFEGVNADGARGARPKRHVYPPAYLEDYDFTPLRHKQVSQSLMPHSTEQLWRYGPADAAQISPALSDRASSPVSQYSLN
VVDEWPPAAVNKEYSYDRQRMGAPLQSGVNIPTVPSAVSSPFHRPWEETEYQLSPQTCLSPSHRPAQTKHHLESLPMPSS
HALNTSQSFQLHNTVAAPLSSDLNFHREGNNSVLTSKQAVEQRSYSAMPSHPVKEPQTEHVLVDFLGKMLNQLHLMRDEI
QTGMGAKRGVPESFKTPAHHDTSSAHYKIESVHRNSCQLAPPPTDSRAPTHEHNWHSERTFKPYNVADMPQPYHSDEPRR
PKNQTSLFRASTLHPDERESTYRGPAPNIPDFVTGDPSEFTRLKIALENLLPPDTTELFRYQILLDHLRLDEARLVADSY
LNSPFPYSDTMAALTERFGQPYKLALRRIARVMDAPDIRRGDTAAFDKFALQIRSLVGMLETLGHDGQAELRCGSHVERL
LCKLPPEMRSEFRRHMFRRPGAVYNLLDFSEWLQYEAWCQSSESYVVERRRRVEQRTEKGRVINPPGRSATILHGAEEGP
PKLPNVPSIVPPASSGILQTQIKAFCPYCDKTDHYLSQCPTFKSFNKQQIAEWIQTNHRCWRCGRTHQAAKCTLKKPCSI
CKGRHLQILHEVNFKPATEGSCLVNSATETLYLDKPTGCRKVLLKVVRVLLRHKDQTLDTYAVLDDGSERTILLPPAATK
LGIHGPVESLALRTIRQDVQAVTGAAVSFQISPVTQPQKVYRISAAFTAERLGLADHSYPLSILEKYQHLKNLPLQPFEG
AHPLLLIGADNTHLITPISPVRLGPSGGPAAIQTRLGWTLQGPIRHLKDQLSSQQCLFLSLTPAERQVRKDVERLWQIDV
MPYRCEKQVTRSKEDREAIHLLETKTTRVEVNGILRYATPLLRRKDFPLFCAPQDAVMPNLRGIERRLTRSPERAEVYKS
EIKKLELAGAAIKLQNEEKESTREKWYIPHHMITHNEKNRLVFNCSFEYEGLNLNDSLLPGPVLSPSLLGVLLRFREHCV
AISGDIRGMFHQVLLLPEDRPLLRFLWRDLRREEPPDTYEWQVLPFGTTCSPCCATFALQQHVALHSTPDEDVRFSVNKC
FYVDNCLQSLPSAQEARQLVDKLRALLSSGGFDIRQWASNKGEVISHLPPEARSTKLELWLSQDKAEPRESTLGLSWHCK
SDNLGFKHRPITYNALTMRNIYRVLASQYDPLGVILPYTTRAKVIVQHLWVKHRDWDDPQLPGELQQEWMKWEEELKYLP
EVTLPRCYYPYYMDHSDVRREIHIFSDASEKAYGAVAYLLTEDHQGELHLAFLLARSRVAPRKQQSIPRLELCAALIGAQ
LAKLLVNELTVKLDKFTYWTDSTIVLHWLCSESCRYKVFVGTRVAEIQELTDCAEWRYVNSEENPADDLTRGKNLQDLIG
PNRWHNGPKFLMQPQEKWPSHPNSQFSDAVDETELKRGTFCGITITSPTTLDGKQCRSWNELVEAIAQELHGAAALDNSL
TADAYKDAETVALRGIQMDCFPEDFQLLKANKPVRSNSRLLCLSPEFDSETQLIRVGGRLRRVEVLDPATIHPIVLDPHH
PYTQLLIKDYDARLLHPGPERVFAELRRRVWILRGREAVKKYQRTCLDCCKWRSKPATQQMVDLPPPRLRLFKPAFYSAG
MDCFGPLMVTLGRRTEKRWGLLFKCLTTRAVHIEVLTSMTSDAFLMALRRFIGRRGQPAELYSDQGTNFRGGETELRETF
STLGSDLQQLLAKQRINFHFNPPASPHFGGVWEREIRSIKMALRTALGSETVSEEVLQTVLIEVEAILNSKPLGYVSADL
ADLDPVTPNCLLMGRPDGSLPQVVYPESDLLTKRRWRHSQILADRFWTAFIKHYLPAMQTRGKWQRSTPDIEPGTVAMLV
DPQLPRALWQIGKVTRVFPGADGHVRTAEIQIKNRTYTRPISRLIVLPEIPEEEDHMGSKETQQPI
>BEL-3_AA#LTR/Pao 57-3353 via tfasty with BEL-645_AA, 3 frameshifts (fragments). [Aedes aegypti]
MTSDSESVKDKTVLNFTENPCEICGPSTHDEAMVGCDECSGWFHTRCVGIKEGEMPKSWYCQSKACQEKAQEYQKRKKQT
RNRKQTDESDKSSVNSRLGASSVNVKVRALEERQKRQMEELETEMHLRKKERELQRAYEKKIMELELQIRAEEEEEELAW
QAEMLRKKTEQVERMKANQESFEERLASMDKELAGLSNLKVPKPASKIDTSVLRVEPSSKINRNALKLMKGNFQKFVEDD
ENTEEEDDDDEYSKNSDLRSQSSGSSMERKVSNNASRVMRNKVDSVSQDGLGQQQTGPTKAQLAARKGLTYKLPKFSGNP
AQWPLFYAAYKASNDACGYMNHENLMRLQEALEGDALELVSGQLLLPETIPRVIEKLRRHYGRPEQLLESLLDKVNRLDP
PQPDNLKSFISFGNTVEQLCGHLEAADLRQHLVNPLLIKSLVAKLPDREKREWVHYRKGRGETTLRTLTDFLMEIVEDAC
EANVDVEFKPPTRSSQSGRSMPMARGGLYCHSAISSSPANTGEKILKPCNQCRRTEHRLRHCSEFKKMRYADRLRLVKRE
KLCHVCLNEHGGQCKFKIRCNIGECREFHNPLMHPVGNVVGLSAHIRTNCTVLFRIVPVQLHCGEKSATVLAFLDEGASV
TLVEKGLADRLGAVGVQERLVIRWTGNVSRVEDTRRTSLWVSSTRASVVDKMLLHTVHTVGKLMLPHQKLDSREIVAQYP
HMRGLSIESYDGQPQLIADANNIHSFVPIEARVGNPMEPIAVRTNLGWTVYGPKRSTTVASSNYLGYHQQVNDENLQELL
KSQYALEESVMVLSEQSEEKRVQEILEGTTKRVGDHSETRLLRSVEEERPAVPKNCNREWQKPVRAVGVIWDPNMDQCAC
YKMEYEELKSCRHESERSAKRFARGCVKRIFGPSILVPRVRSTSTIRGKIVRQHRSRSKQNWRGLPTKWNVAHGLLKWRQ
GPPLQSNATQSSAIEETEEAAKNMLHKAIDDELISRWSKLLWEEASVGCFVINNRRKGKGKLAENTRVPAKGRHRAHWDS
FPDEKNTFTRCLKYHPDGSAEVTKRSGPIYQSSLDDGKIRKSWKRGIAAAVIPGRDML
>BEL-2_DFi#LTR/Pao 417-5653 via tfasty with BEL-5_DPer, 1 frameshift. [Drosophila ficusphila]
MAENDSVGARSAAVPSDLDFYKAKADATLRQVEALKSYLESDEAVNFDVTDLQVRLDFVDQMQVDFDKSQTAVERLDLQE
LCSDARSKFANIYLAVKSQISRELGKQRRFSVVNSTALPHVGGDSRPAARATRLPEFKLPRFSGAYIDWPDFYAMYNTIV
GNNDDLSNVEKFQHLRSCLDGTALDTIRSLEPTEANYEKAIELLVSRFDNKLLHFQAHIRSICGISGVEQGSAASLRRLS
DQMNSHLRALNTMATTQEIMDGLLIYLVASKLDRHTREKWEEGLQANKLLKWKDMATFLEKRCRMLENIENAMVIQTPSK
QVGKPNTNKNIHNALVASSLNTSSCSMCESRDHFISKCAQFLNLSPTLRYKEAKRLHLCLNCLRKGHGMQQCKSGSCKRC
HSKHNSLLHIDSNAIATPSPPTTTTNTQNVVSLLSSSFSEAPPVVSSDSKTDYVLLATAIVYIRNRSGAFVPCRALLDSC
AQINIVTSRFVKQLQLTTRQANTSISGVGESSFSSNATVDLEAHSRDRKYRTALTAVISGKITDYQPHFDLNALGWNIPP
NLVLADPWFYSSQRIDLLIGAGIFYELLCVGQMRLAENLPILQKTRLGWIASGGISFSNMKRSALAVTTEPVIQSETDSL
PDIVKRFWEIDSYCGSPIVATDEDVLCEQLFQNTFSRLSSGQYSVRLPAKASFDMLGDSYGRALRRFKTLEGKLLKDLEL
KSQYAAFIKEYIDLQHMSLASEQSVASQYYLPHHCVQKPDSTTTKLRVVFDGSAKTTSGYSLNDLLFAGPSIQPKIFNTL
LRFRFFKVALCGDICKMYRCVRVTSPDNYLQSILWRDNPNQQVKAYTLDTVTYGTKPAAFLAIRAMQQLSYDEEAEFPLA
AKIVRRDFYVDDLISGGDSIEEAAQIREQVKELLSKGHFPIRKWCSNEAAALEGEPEIDREKTLRFHDGTDVLKALGLYW
DAKSDHLLFSLSGTMTESGSTKRSILSAVAKFYDPLGLIAPIVTKLKIFLQILWKDKLDWDESLPQSLHSSWLEHMKQIS
AVNHLKFPRFVMQPNSSLEIHAFCDASLAAYGACVYVRSEIHGCVSTHLLCSKSRVSPLKTLTIPKLELCAALLLSELIS
NIALTISSDCNFYCWSDSTITLSWIRQAPSDFNIFVSNRIAQIQDRTKGMIWRHVPTHWNPADILSRGCSPLELLESNLW
REGPPFLRLDSSCWPNITPVVDNLPERRRMVLVVTEKQDISYDCKFQNSFGKLQRVFGYIYRFWLLKFQNQTRRKGPLAV
DDVKGGTHLLIKGIQRVFFAEDYKALRKNKQVASNSKLSSLHPILDDSGLIRVGGRLQNSLLDYDARHPILLPKNHPVTQ
AIVAHFHHKFLHAGPQSLLAALRQRFWPIGGRKTVAAIVNKCIRCFRLKPRMMEHIMAPLPASRVQPSRPFTTTGIDFCG
PFYSKSEVRNRPPAKCYVAVFICFATKASHLELVEDLSTASFIAALKRFTSIRGKPNTIWSDNATNFVGARNELQELRQI
FLADPPNIELRNDLLSNGINWQFIPPRSPHFGGLWEAAVKAAKYHFHRVVGRSVLTFHELRTLVCEVSAMLNSRPLCPIS
ENPSDLEVLTPGHFLIGTAFNAIDEPDITHLNIDRLSRWQRVCQMQQAIWHKWSTAYLSLLQERGKWRSEKANLSPGSIV
IIKDDNLPSLQWRMGRVESIVLGPDGVARVAVIRTAAGIIRRAVGKLAVLPFETTSSVSVTLPAGG
>SZ-50_pol#LTR/Gypsy 2994-6101 (1 stopcodon) [Oryza sativa]
RRTLISSPGALTKWGGGVSADLIMYHLAVKPDAKPREQKLRKMSADRQEAAKAEVQKLLKAGVIQEIVHPEWLANPVLVR
KSNGKWRMCVDFTDLNKACPKDDFPLPRIDQLVDSTAGCELMSFLDAYSGYHQIHMNPPDIPKTAFITPFGTFCHLRMPF
GLRNAGATFARLVYKVLCNQLGRNVEAYVDDIVVKSRKVFDHASDLQETFDNLRTAGIKLNPEKCVFGVRAGKLLGFLVS
ERGIEANPEKIDAIRQMKPPSSTHDVQKLAGRIAALSRFLSKAAERGLPFFKTLRGAGKFSWTPECQAAFDDLKQYLQSP
PALISPNPGSELLLYLAASPAAVSAALVQETEFGQKPVYFVSEALQEAKTRYIEMEKLAYTLVMASHKLKHYFQAHKIMV
PSQYPLGEILRGKEIFGRLSKWAAELSPFDLHFVARTAVKSQVLADFVAEWTPVSTSEPEPVEQPWIMCSDGSWSHKGAG
VAAILISPNGVPVRYAARLQFNTTNNAAEYEAILLGLRKAKALGVRRLLIRTDSKLVASHVDKSFEAKEEGMKKYLEAVR
TMEKYFTGITVEHLPRGQNQEADALAKSAASGGPHLPGIFFEVLHTPSVSVDSLVLTIDQVKLGEDPNDWRTPFVKYIET
GWLPDDEAEAKRLQIRATKYKLISGQLYRSGMLQPLLRCVSFAEGEQMAKEIHQGLCGAHQAARTVASKVFRQGVYWPTV
LKVCAEQIKKCESCQRHGxSQTAPHYDLQPIAPIWPFARWGLDIIGPIPSARNGYKFAIVAVEYFSRWVEAELLGAITSA
AVQKFVWKNIICRFGVPKEFITDNGKQFDSEKFRQMCEGLNLEIKFASVAHPQSNGAAERTNGKILEALKKRLEGAAKGK
WPEEMLSVLWALRTTPTRPTRFSPFMLLYGDEAMTPAELGANSPRVVFSGGEEGREVSLELLEGVRVEALEHMRKYAVNT
SATYNKKVRPTDLLPGQLVLRKKANPVAVGKLESKWEGPYLIKHKSRTGSFRLATLEGEGLDHSWNAASLKRFYV
>Skippy_pol#LTR/Gypsy 2538-6341 [Fusarium oxysporum]
MSRRHQLHQERMQHGSPMGKRHAPSVTERQIGEKSEAKLPKKALRMATKGRQRTCLELKVRIKGKWLSALVDSGADMNFI
SPTTVNELRLPWKDKNDPYTVHDGQGETYLYENGNITREIDHLKVFVNGKNQGIDFDIIPVWRYDLVLGYPWLLRYNPQF
NWRTGQVDCEDHPSDDESDSGYDTRSRTSTEESSEDRSGKVPPIPKGTRHKYHKGKVKCIRRTIASLKGQFKQLDQDIKQ
MKQIAAKESDERLKNIPPEYRIYEKLFQEELDTKLPQHTDYDIEIVLKDGKNPKFFPIYNLSQDELGTLREWINDMIRKG
YIRPSKSSAGFPVMFVPKPNSNKLRLVVDYRQLNEITEKDRTSLPLITELKDRLFGKKWFTALDLKSAYNLIRIKEADEW
KTAFRTKYGLFEYLVMPFGLTNAPAVFQRMITNVLREYLDIFVVCYLDDILIFSDTEEEHTEHVHKVLKALQDANMLVEP
TKSHFHQSQVTYLGHEISHNEIRMDRRKIAAVAEWKVPTSVKETQSFLGFANYYRRFIKDFSKTAIPLTEITKKDKQFQW
NDKAQEAFEKLKSAITSEPVLVMFDPDRQVELETDASDFALGGQIGQRDDNGVLHPIAFYSHKMHGAELNYPIYDKEFLA
IVNCFKEFRHYLRGSKHPVKVFTDHKNIAYFATTQELNRRQLRYAEYLCEFDFTIAHCKGTDNGRADAISRRPDFDTGTV
KTKEQLLETNSKGEYQFTQPVKTIALTRKGITEEEKQRYIGFKKYISMQQLKEHHRDMHEKPEEASASHLSWYFGSGRDE
RIRQIMDKCPTCKQKPQGWRYPIQSLTDQDEQERVEQEFIYEIHAHPLHGHQGVTKTMKRLQELGYRHFKKGQVEKVIKQ
CDLCAKTKAQRHKPYGQLQPLPVAQRPWDSITMDFITKLPLSEEPSTGIFYDSIMVIVDRLTKFSYYLPYREATDAEELS
YVFYRHIVSIHGLPTEILSDRGPTFAATFWQSLMARLGLNHRLTTAFRPQVDGQTERMNQVLEQYLRCYINYEQNDWVEK
LPIAQLAYNTAYNESTKLTPAYANFGFTPNAYHNARPEKSINPAAIIKSEDMQDLHEYLKTELEFVRKRMKNYYDPKRLK
GPTFSEGDMVYLATKNIKTDRPSHKLDYKFIGPYKVLQKISENNYKLDLPPKVRLHPIFHVSLLESAADTIQVKTGNEPR
EISGPEVYEAEAIRDTRKINGQREYLIKWKNYPENENTWEPPKHLVNAQRLLKDFHQRARKKERRPK
>SZ-53#LTR/Gypsy 72-4832 via tfasty with SZ-26, 4 stopcodons.  RN10 similar but way to poor quality. [Oryza sativa]
MEKQNIDFGKVLGEIQESLVLLNRAQVDTQASIVKLDQGVSAWRPQVEAAVQDLRDEVGDLRQQVDLLNKAKQAPPAASS
PWVLLTGKERKAPLLPTPTATSPAAVAEGAEKWANGHRLHQNFWGKASGVVTTLIHSPGKGTSDSNRIPFRSLENFDLDG
GASDFDQGNRQYNHRVPKLDFPKFDGSDPQDWLMRCEHYFDVNNTYPGLWVRVSTIYFIGRAASWLRSSRAHVRFPIWED
FCVAVANKFDRDQHDELIRQMDTIRQTGTVWEFYEKFDELMNHLLAYDPAVSMRYLIHRFTEGLRRDIRNAVLLQRPRDL
ETALAIATLxEEVAESSGGHSTRELKKFDGQVNNRSSLKGAWPLPQPPGRVVGGNRTEDRLGTEPHRSTSSSSDKISALK
AQRRAQGLCYICAEKWSPTHKCSTSVQLHAVQVLFSILHETDSTLDDEPAVSPTGTLMAISLQAVLGSETDGTMxMVGQI
QGLEILILVDSGSSVSFLNSTIADNLKNVQRKPQQISVQVANGNILHCTSAITNCQWSTQGYVFNTTLRVLSLNSYDLIL
GMDWLTEHSPMTVNWATKQLTVSLKGQFILLQGINSQVSQCNLLLGHQMKQLQARQAVAHLVQLCVSHSNIEQEFIPDSV
QQVLQEFSGIFDEPSGLPPSRSFDHTIPLLPGAQPVSVRPYRYTPAQKDEIESEVTEMLDKGIIQPSASPFSSPVLLVKK
KDGTWRFCVDYRHLNAITVKNKYPLPIIDELLDELSGAQWFTKLDLRSGYHQIRMNSADEHKTAFRTHHGHFEFKVIPFG
LTSAPATFQGVMNSILSSLLRRCVLVFIDNILIYSRSLEEHVKHLRAVFQILARHQLKVKKSKCSFAQQRLSYLGHVISP
NGVATDEEKIQAVQMWPTPTSIKELRSFLGLAGYYRKFVRHFGILSKPLTNMLRKGQIFIWTSVAEESFQALKQALISAP
VLAMPNFALPFTVETDASDKGIGVVLLQNDHPIAFLSRALGPRHHGLSTYEKESLAIMLAVEHWRPYLQHAEFCIRTDHR
SLSFLTDQRLSTPWQQKAVTKLLGLRYRIVYRKGTENGAADALSRVSDPFLVMLLALSICIPEWMQEIINGYQQDPDACS
KVQALCINNAAVPQFTLKNGILYFQDCIWIGQNSSVQQKILANLHTAAIGGHSGIQVTYQRIKQLFAWPGLRADVVRFVQ
SCDICQHAKSEHVRYPGFLQPLPVPDQSWPVVSLDFIEGLPRSASFNCILVVVDKFSKYAHFVALAHPFTAFEVAESYMQ
NIHRLHGLPxALISDRDRIFTSTLWTTLFRLAGTQLRMSSSYHPxTDGQTEQVNQCLETFLRCFVHACPSKWSRWLTLAE
YWYNTSFHSSLGTTPFEVLYGHKPRYFGLTAAAACPSSDLANWLTERDHMLSLIREHLQRAQLRMKSQADAKRSEREFAV
GDWVYMKLQPFVQQSVVTRTNRKLSFRFYGPFQVLARVGQVAYRLALPASSLIHSVVHVSQLKKALAPTETVQSQLPVFL
ADQDASPTPLRILDRRFVRKGAKLVEFVQVTWSGPDAEVITWENAQELRHRFPSAEAWGQASSQWGE
>SZ-56#LTR/Gypsy 181-4799 (1 stopcodon) [Oryza sativa]
MAQDSKLDLLLKSMAENEKKREEAEARMRADFAELKKSLEIRLPAVEKKVDDLGIDLVALSNKVEQLEHNPNQPPSGDEF
AGKVTTVALPKKEPIYKATPPTKGTRELDPTSPVHHSNEGWGSQFENTGFSARMIGNVPPMSCPQFNGDNPHMWKSNCEV
YFDVYGIHPQNWVKVATLNFCGNTAFWLQSVRAQLMGVTWFELCDRVCARFSRDRQQALIRQWIHVSQTSSVADYVDRFD
SIMHQLLAYGGANEPIYFVTKFVDGLKDNIRVGVMGHRPQDLDTACTLALLQKEALEGVQAINVKKNDSGTFVKSKSTSN
FSQSVLPSKSTALINTEEKRSAEFSRPKDDKISALRAYRRSKGLCFVCGERWSKDHKCATSVQLHIVEELIHALQSGGEE
NSCSDGTPEIDDDSLMAISFHALHGTDSPKSIRLRGWVQGTELLMLVDSGSTHSFIDTKIGSKLHGVQKLLQTIKVQVAD
GGQIACDMFLPKCNWWTQGHNFTSDFRLLPLGNYDVILGMDWLEQFSPMQIDWIHKWLEFQHQHQLVKLQGIVPQTDCCP
TITGAQLQGMSKNGSIMCMVQLNAVEVPEHAVIPTIVQPLLQEFQELFSEPTELPPKRTCDHHIPLIEGAKPVNLRPYRY
KPALKDEIEKQVTEMLKTGVIQPSHSPFSSPALLVKKKDGSWRLCIDYRQLNNITVKSKYPVPVIEELLDELSGAQWFSK
LDLRAGYHQIRMAEGDEYKTAFQTHSGHYEYKVMSFGLTGAPATFLNAMNDTLSPVLRKFVLVFFDDILIYSPTLESHLL
HIRTVLQLLSASQWKVKLSKCSFAQQEISYLGHVIGVQRVSTDPRKIQDVVNWTQPTTIKKLRGFLGLAGYYRKFVKNFG
VISRPLTQLLKKGIPFKWTEETETAFQQLKQALCSAPVLALPDFSKSFTVETDASELGIGAVLSQDKHPIAFLSRALGPK
TKRLSTYEKEYMAILLAVEHWRPYLQHGEFTILTDHHSLMHLTDQRLHTPWQQKAFTKLLGLQYKICYRKGSSNAAADAL
SRREPFTSEIHAVSECVPLWMQDLIQGYDQDPHTKQIISELIVNGSSRPHYQLCNGVLKYKGRIWVGDNPALQHRIITEV
HSTPFGDHSGFPVTYRKAKGMFAWTGMKKMIKTHLQSCQVCLQAKPDRAKYPGLLQPLPVPAGAWQVISLDFIEGLPRSS
HYNCVLVVIDKFSKYSHFIPLSHPFTASAVAQEFMKHIYKLHGLPHVIISDRDKIFTSQFWEQLFSKSGTKLHKSSAYHP
QTDGQTERVNQCLEIYLRCFVHATPRKWASWxYLAEFWYNNSFHSTLGKTPFEVLYGYTPAHFGITIEDCQITDLQEWHN
ERKLMQQLLQQHLHRAQQQMKHQADKKCSFRQFKVGDWVYLKLQPYVQTSVAQRACHKLAFRYFGPFQILDRVGSVAYRL
QLPAGSSIHPVFHVSQLRAAVGFSKPVQEELPSSLGAFQIPLQFLDKRLTKKGNRVVVQLLTHWSDSSAEDSTWEDMEDL
CNRFPRALAWGQANFQEWG
>SZ-54A#LTR/Gypsy 135-4432  [Oryza sativa]
MGDDLKSTLETLAKTLASLQSSSEATTKAIEDNTQAIAALSVARTTEKASTESSGTPAPDRPPKHWRPEFPKYDGKTDPL
AFINRCESFFIQQHVIPAERTWMASYNLQDGAQLWYMHVQDNEGTPTWERFKELLNLRYGPPLRSVPLFELSACRRTSTV
EDYQDRFQALLPRAGRLEEAQQVQLFTGGLLPPLSLQVQQQKPASLEEAMSLARQFELMEPYLFPATTSARGVLPTPAPR
PSTGPVVKPAPATVTVEGRPVKRLSQAQQEERRRLGLCYNCDEKYSRSHNKVCKRLFFVEGGAIEEGDDTVEDDTEEATV
EAPVFSLHAVAGIPLGKPILLQVTLGAASLVALVDTGSTHNFIGEDAALRTGLPVQPRPRLTATVANGEKVSCPGVLRRA
PITIQGMAFDVDLYVMPLAGYDMVLGTQWMAHLGTTIAWDVTTGTVSFQHQGRTVSWQSLPPHQRADVHAVSTGTSLVAA
TGSSSSTPAPTTEPALLDGLLGSFDDVFAEPRGLPPPRGRDHAIHLLPGAPPVAVRPYRYPVAHKDELERQCAVMMEQGL
IRRSTSAFSSPVLLVKKADGSWRFCVDYRALNAITIKDAYPIPVVDELLDELHGAKFFTKLDLRSGYHQVRMRAEDVAKT
AFRTHDGLYEFLVMPFGLCNAPATFQALMNDILRIYLRRFVLVFFDDILIYSNTWADHLRHIRAVLLLLRQHRLFVKRSK
CAFGVSSISYLGHIIGATGVSMDPAKVQAVVDWPQPRSARTVRGFLGLAGYYRKFVHDYGTIAAPLTALTKKEGFRWSDE
VATAFHALKHAVTTAPVLALPDFVKPFVVECDASTHGFGAVLLQDKHPLAFFSRPVAPRHRALAAYERELIGLVLAIRHW
RPYLWGRAFVVRTDHYSLKYLLDQRLATIPQHHWVGKLLGFDFTVEYKSGASNVVADALSRRDTDEGAVLALSAPRFDYI
ERLRAAQTTEPALVAIRDAIQAGTRSAPWALRDGMVMFDSRLYIPPSSPLLHEILAAIHTDGHEGVQRTLHRLRRDFHSP
AMRRVVQEFVRACDTCQRNKSEHLHPGGLLLPLPVPTTVWADIGLDFVEALPRVGGKTVILTVVDRFSKYCHFIPLAHPY
TAESVAQAFYADIVRLHGIPQSMVSDRDPVFTSSFWRELMRLTGTKMHMTTAIHPQSDGQTEAANKVIVMYLRCFTGDRP
RQWVRWLPWAEYIYNTAYQTSLRDTPFRVVYGRDPPIIRSYEPGETRVAAVARSMADRDEFLADVRYRLEQAQATHKKYY
DKGHRAVSYEVGDLVLLRLRHRAPASLPQVSKGKLKPRYFGPYRVVEVINPVAVRLELPPRAKLHDVFHVGLLKKFVGAA
PPSPPALPAVHHGAIDPEPERVTRSRLARGVRQVLVHWKGESAASATWEDLDTFKERYPAFQLEDELALEEGR
>Skipper_pol#LTR/Gypsy 2840-6175 [Dictyostelium discoideum]
MLPYPNDNQSQSHNLLDDDEDIKEQVTKFVESIPSQLCDILVKTNPEEEEIQAVRDFINDSFEDVIVDKLPDIPDQINNS
RRGNIIHNIILKKDQDVEPTKKQIYYSTDDHKRHVEEMVLKFIDLGIIKRSESNYSSPIMLLKKRDSWRVVHDYRQLNKV
TVRDDHPFTPVDSLLNQCKDSKLFSKFDMIMGYFQVLINPEHAKYTAFITHIGKFEYTRMPQGLVNSPSTFARLMVEIFG
KIKSLLQYFDDLLVHSKLDYMVHFIEIIRMLLYCRKYLLFISREKSEMLKTEVDFLGFHIHKDGISPRAAKVRAISELPE
PRNAKEAEAALGLFGFFRRHIENYAEKTYHLSKESKGKNKKTLSDESLKEFNNLKKEFEGENIVAIPIEQDNSIPIDIEK
VKASTDMPIHSDNNNLNNGSFHLYCDVSDKALSGVLYQIQGNKFKVIWFHCRKLTDTQKRYSIGDREFLSIIDSLKKFQH
LLIGKKVSIYTDHQNLTYIINKSNDKPFTKRQDNYMKYIKEFDYELRHISGKKNGIADFLSRKYDNFQWDESFLNKIKEE
QINSQWLLEMKKNPNLCIEEINDICYLSEDGFKKLIIIDKETIHTVIREYHDTKYSGHHALDITYNNIRQDYYFKEMFSI
IKRYIKSCATCQLNINRKDNGILQSLEIPFEVWRDISIDFLSLPKTMYAINGFTVEVDQVCVIVCRLSKMVHIVPCHKTI
DAQHTAQLLLNHVFRLHGYPRTIVSDRDPRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTERMNREIIRILTKASTEYG
ENWSDIIPLIEFAMNSSMSKSTKMSPFQIVYGFNPPTPVNHFNSLTKTRIPMSNIKKIVRDNILDAQINAPKYYNRGRGD
VIFVVGEKVMVKRKFFQTNLSKDLISHKLESKNCGPFIITAVHGNNVTLDLVGYPKKHNVFNKDQIVKLYEDSEWLREEI
SMPEPEEMDEASYEVESILNHDKVKKMYLVKFKGYPEPEWIREVDTDCEELVREYWNNVQKKQLNSRRERENVTTEAVEP
IVSPPLSTEVQSSQTLQPITPRQQNSISNQRNQSKKRKSRNQNTSSDDDEHDLSLQIKTTRSGRKVTPKSL
>RLG_scDEL_4_1_gag#LTR/Gypsy 487-5058  [Saccharum hybrid cultivar]
MDLRSRRVGTGSGRGSTSAGAGRGLGEGHGESGRDNGNNNANGQSREAPLLGPPSPPPPPPPPMTPAEMMAEMLASRQET
ARALEMMAQALGGFVRGGHGGNGGNGGGARGLERPCSYQDFLKTNPPTFTPTAEPLDAEHWLRVLEQKFLLLTVTDEQKV
RFAAQQLLGSASAWWDTFNAMQPVGHPVTWQEFTTAFREYYIPAGVLNRKLSEFLDLKQGSMSVMEYANKFNHLAQYAGT
HVDTDEKKRDRFYRGLSCILQKELYTGNYQTFGTLMNAAIAMEGLQRDTQAEWKRKRGISGSSSHPQSQKMQVVKRMSYH
PPGGQPSRQPQQTRQTPPTQYRAPTQQVQQPQGPQFPPRQGQMIKSTACFKCGKEGHFARECPENRAAQPSQPSANSRLI
KRTIIKKKVPVSRSGQVNYTEAEEILQNEPVMAGMFTIDSHPAFVLFDSGASHSFMSMGFAERHNISLMAIPFAYKISTP
GAQMCINTRTDTVSLVLATHTYRLQFMLLPGQGIDAILGMNWLKVYGVVLDLKRRVVELRLPSSEDRMSLRISLNSASPV
AANVEASPDLASIPVVCEFPDVFPEDLPGLPPDRDVEFIIELEPSTAPISRRPYRMAPPELAEMKKQLEELLKKGFIRPS
SSPWGCPAIFVKKKDDTLRMCVDYRPLNAVTIKNKYPLPRIDALFDQLAGARVFSKIDLRSGYHQIKIRPQDIPKTAFST
RYGLYEYLVMSFGLTNAPAFFMYLMNSVFMPELDKFVVVFIDDILIYSKNEEEHAQHLRTVLNRLREHKLYAKFSKCEFW
LDRVQFLGHVLTPEGVSVDPSKVHDVLSWNSPKSVHQIRQFLGLAGYYRRFIPDFSKIAQPMTKLLQKDSKFVWSPACEE
AFQALKKFLTSAPILAQPDIDKPFDVYCDASKTGLGCVLMQEGRVIAYASRQLKKHEVNYPTHDLELAAVVHALKIWRHY
LLGNKVHIYTDHKSLKYIFTQPELNMRQRRWLELIKDYNLEVHYHPGKANVVADALSRKSHQKDEESLPLSHSAVLAHIA
LVSDLLEQIIIEQRQDVLEIPHIKKLIAEGRGPHFSIDEQGVVRYKNRLVVPGSDELRRKILEEAHSSRLSIHPGSNKMY
HDLRHLYWWSNMKQDITKHIAECDICGRVKADHMRTPGFLQPLPIPVWKWEDISMDFITGLPRTVKGHDSIWVIVDRLTK
SAHFLPVDGRYTAMQYAKLYFDRIVTLHGVPLTIVSDRGSVFMSRFWTQLQKCLGTSLLRSSAYHPQTDGQTERVNQVLE
DMLRACVISFPEKWDECLRLAEFSYNNSYQESIRMAPFEALYGKKCRTPLNWVEVGDRGYFGPDFIHEAREKVGIIRSHL
KAAQNRQKTYADKRRRPLQFEVGDYVYLKVSPMKGVHRFGVRGKLAPRYVGPYKVLERRGTVAYRIQLPDILSAVHDVFH
VSQLKKCLRVPDEAVEIEGLPLQPDLSYIEHPVKILDEKERVTRNNVVKFYKVQWQNHSEDEATWELESYILKHYPHLIP
GSSM
>RIRE8C_gagpol#LTR/Gypsy 1210-5711 via tfasty with RETROSAT2_gagpol, 1 frameshift and 5 stopcodons.  [Oryza sativa]
MVNTRTGGHGSEHENTDARTTSQQPPQAPQVNQQNFEVFMQAQIELMRMMMQQLRNQQQQQPQQQPQGGPPPQSKMFEFL
RTKPPTFKGMGTPLEAEDWMRTMExKLDITQCSDGEKVRFTVQQLEGAALDWYENLRGGLDDPEALTFEEFHMAFRDYYV
PGIKELKKEEFRTLQxDNKSLQQYLTQFTTLARYAPEDVTRDADRQRHFLKGLNSGLKVGLVAHDFSSFQSLVNKTLLLE
EERRKLGEDRKRKMNQQASGPSQRPRGAFQQNNNCQLAAPQFRTIPQTLVLAAQTPRQATPTQSVRGQGSxSFIRRCYNC
KEVGHVTKNCPHPKNIITPVKFNLGNTPAKAPAPGVAQQTAPATQQTIVRGRVNHVTAEEAQTSTDVVLGKFLVNSVPAT
VLLDSGASHSFVSRSCASQHQFPTIPLKCSLLIQTPGSEMRTQTGCPRVKIEIEGVEFFANLIMLDTPQLDVILGMDWLH
SSKAVLDCGSRSITLENSKGERVNFKAIVNPPWKGALVHNMEVSELQKVPIVREYPDVFPEELPGMPPHRDIEFVIDLVP
GISPIFKRPYRMAANELAEMKKHIxELKEKGYVRPSSSPWGAPVIFVEKKDGTKRMCIDYRSLNDVTIKNKYPLPRIDDL
FDQMKGAGVFSKIDLRSGYHQLRIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNMMNKVFMEYLDKFVVVFIDNI
LIYSKDEKEHENHLRLVLEKLREHQLYAKFSKCEFWMKEVEFLGHVVTAAKVVVDPKKVSTVINWQPPKTVTQVRSFLGM
AGYYRRFIEGFSKVARPLTQLLKKEKKFMWTSECQRSFEALKKSLTSAPVLVLPDIHKGFDIYCDASRTGLGCVLMQEGK
VVAYALRQLRPHEENYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQHDLNLRQRRWLEVTKDYDMGIHY
HPGKANIVADALGRKAYCNNVEIKESQLSLYREFERLNLEIVPKGFVANLEVKPTLEDQIKEAQKDDANVKEIKLNMKKG
KAIGFTEDENGVIWLHEKLVVPDQPELKKLILSEAHESRYSIHPGTTKMYQDLRNRLWWPSMRREIAEYVVLCDVCQRVK
AEHQQLAGLLQPLKVPEWKWYEIGMDFITGLPKTQLGYDSIWVIVDHLTKVAHFIPVKITYSGDKLAEFYVNRIVCLHGV
PRKIVSDRGTQFTSRFxQALHEAMGTHLNFSTAYHPQTDGQTKKVDQILEDMLRACALAYTSNWDKNLPYVEFSYNNSYQ
ASLQMSPFEALYGRPSRTPLNWNETGERMVFGPDVIREAEERVALIRDRLKVAQSRQKSYADNRRRDLTFEKEDYVYLKV
TPMRGTKRFQVKGKLAPRYVGPFRIIARRGEVAYQLELPSSMSGIHDVFHISQLKKCLRVPEEETPLQSVELQPDLTYRE
VPIKILETAERTTRSKTIRLCKVQWSHHTEAEATWEHEDDLKAEFPELFPSQSESRGRDSV
>rn_364-201_IR#LTR/Gypsy 3830-8277 via tfasty with RIRE3_gagpol, 1 frameshift and 6 stopcodons. [Oryza sativa]
MTRPSTRSQSHDAPEGSRSRGDEPPPPPTMAEVLMAVERNREAENAVLQQIAASAAATATHIAQGAGGGGHHAAGGLAEF
QRTQPPVFTRSDDPLDADDWLRTIERKLTLIRCPDAEKTNLAAEQLQAAAGDWWENFLAMQPDGRVVTWAQFRDAFRAAH
VPKGIMDLKQCEFLSLTQGNKSVMEYLCEFNHLARYAPDDVKTDTRKQNRFMNGLSAEMQLELAAHSFLDFQDLVNRSVV
VESKMKNLEAERKRKKAAQISAAGGSQKPRGWQPPPPRFQAPPPPRPQRFVPRPPxQRVAPPVGGNQQTIRRPVRSNNCF
NCRQAGHYINQCPYPHRAQLQGPRPAAPRPNPPLRSAPQGQQTQKRGRVNHVTAEEANDAPDVLVGTLLVHSYPASVLFD
SGATHSFVTKGFASDHKLPISRLHPPLIVTSPDSEIIAEFISRDTKIAIQGVEFTAELTILHTKGLDVILGMDWMHKNHG
VIDCGHRLVTLENNTGELIFLALDDHSPQLHALSGAKAIDITAVPVVCEYPDVFPEELPGMPPDREVEFVIDLLPGTAPI
SKRPYRMPPNELEELKRQLTKLQAKGFIRPSSSPWGCPALFVKKDLSLRMCVDYRPLNEVTVMNxYPLPRIDDLFDQLTG
AHVFSKIDLRLGYHQIKIRPEDIPKIVFSTRYGLYEYTVMSFGLTNAPVYFMSLMNLIFMEYLDQFVVIFIDDNLIYSKS
EEEHEKHLRLVLEKLREHHLYAKFSKCEFWLKEVGFLGHVLSKGGVAVYPSNVQKVLDWGQPKNPSDIQSFLGLAGYxRR
FIENFSKIAKPMTQLLKKNEKYVWSAECEQSFQTLKEKLTTAPILFLPDTHKSFDIYCDASRQGLGCVLMQEGRVVAYAS
RQLRPHEVNYPTHDLELAVVVHALKIWLHYFIGNRCEIYTDHKSLKYIFSQSDLNLRQRRWLELIKDYDMGLHYHLGNAN
VVADALSRKPQCNCLSVKPRSETLCSEIHKLGLEMVPHGSLAALEVKPTLYDQIKEAQKDDKGMARIRAKMVEGKAQCFT
QDSNGVLWFGKRLVVPNHRKLKQLILSEAHNSPFSIHLGSNKMYQDLKQKLxWTRMKREVAxFVAKCDTCRRVKAEHLRP
AGTLQPLPIPIWKWEEIGMDFITGLPTSQKGNDSIxVIVDRLTKSTDFLPIHSTDMVSKLAELYLSRIVCLHGVPTKIIS
CLHKAMGTKLFFSTAYHPQTGGQTERVNQILEDMLRACVLEYGKNWEKCLPFAEFSYNNSYQSSLQMSPFEALYGRRCRT
PLNWSESGERPFFGPDIVMEAEEQVRLIRDRLRTAQSRQKSYADRRRRELSFKVGDHVYLKVTPFKSTHHFGVKVKLAPR
YIGPYRIVAKRGAVAYQLDLPSTLSSYHDIFHVSQLKQCLRVPTEETQSEDLDLQPDLSYQEHPIRILDEIERTTRRHTI
KFFKVQWSNHTPDEATWEREDHLRDAYPFLLTDPSQSQGRDSF
>Sabrina3_TM#LTR/Gypsy 2-1834 via tfasty with Athila0_gagpol, 3 frameshifts and 3 stopcodons. [Triticum monococcum]
VDNDIVRxKLFPFSLxDRAKTWFSYSPKNSTDSWNKCKDAFISKYFPPAKIISLRNDIMNFKQLDHEHAAQSWERMKLMI
RNCPTRFKFMDDHTIFYAALNFASRNLLDSAVGGTFMEITLGEAIKLLDNIMANYSQWHTERSSTSKKVHVIEEFNVLSG
KMDELMKLFASKSAPIDPNDIPLSTLIENNNESMDVNFVGRNNFGNNAYRGNFNSRPFPSNSSNNYGNSYNNSYGNYNKI
PSDLENNIKEFISFQKNFNAMVEEKMLKTNDLARNMDRISLEIDSLKIVSIPPKRYINESLKYMRISIDECKQRTTRMHA
NRDWFGKACSSNSCDNNDEHLKVIDVTPIxSSFSNINLDKYGIVYESTLARRRPNDLEFIDLDAKIDKSGIAEVKTLSSN
QPTLFDFKYFNYDNWSLIDCISFLQSMLNSPHAYNQNKAFTKHIVDAMMKSFEDKLELKVSIPRKLYDEWEPTIKIKIKD
YECHALCDFGASVSMIPKTLCDVLGVREFDDCSLNLHLADSTIKIPMGRINDVLIVANRNYVPIDFIVLDIYCNPTCPII
LGRPFLRTVCEIIHMKEGNIIFQFSLRKGMEHIPRKKIKFPYESINGGYLWI
>Ronin1_Cis#LTR/Gypsy [Ciona savignyi]
MDKQLLRPKELNIEPEAHNASVHFTYWMRTVNDFIEHLDEGSRTATTAANKKRIIVNCLSPEVYALVEDVDSFEEIVATL
KRMYIKRKNNVFARYLLVSRHQNPEESIPEYLRELKVLAKACSFSDASAAQYKDELTRDAFINGLISPSVRQRLLEIDDL
DLLKASELAESLDKAQRQSLIMSKPVPPLASVSCNEQAPVTDTPTTNEAALAATRRRVGLPKRSTEVTSCFFCGGMQHRT
RSTCPARNXTCYNCGVRGHFARVCRQRATIKQPVVGNSSTAVCIMPEVSPLAPFSPLAGAPSGLGPALVDASLESVPVKA
LVDSGASESFVNKGLADKLSLKTSGPISPISMASSRLSLTTFGKTSATVSLLGRSYHLTFGVIDSLCADVILGQDFLKRH
TEVIFQMGGTEAPLRIVASTPPTLALAVARLNAPRLFEYILPNCTPIAAASRRYSTDDLNFINEEITRLLESDIIEPARS
PWRAPLLVISREGKRRLVVDYSVTVNRFTQLDAYPLPKIEEIVNCVARDKFYSSIDLRAAYHQVPLRECERHFTAFEAGG
KLYQYKRLPFGVTNGVAAFQRAIDEFIEINKLKKVYAYLDDITVTGATLQEHDRNLNELLQAARRHNLTLNQEKVKIRQT
SIDLLGYRISSNNIQPDPRRLQALVDLPPPTNSKELKRVLGMLSYYAKWIQNFSLRVQPLLNSKLFPLDEAAIRSFKDLK
TELGNITLGVIRDGIPFEVETDASDVAIGGVLSQNGRPVAFMSRTLNNSERNYPAIEKEATAIIEAVRKWAHFLKGRSFT
LITDQKSIAYMFLRTNRGKIKNTKILLWRLELGQYSYDIRHRPGPQNIVPDALSRVCASSGSASGLVNLHEAMGHPGYVR
LYHYVRSRNLPYTSEETKSVGKNCRTCAELKPRFHRPQPRSLVKAMKPWDRISMDFKGPVQGRNQYLLVIVDEYSRYPFV
FPCKDMTSRTVIGCLSSLFCLFGFPEYIHCDRGTSFISRETRQFLVTRGIATSNSSPYHPQGNGQCEKTNQTVWRTVKLI
LHSRGLPQTRWEEVLPEALHAIRSLLCTATNQTPHERFLCFPRRAMNGTSMPTWLLNPGVVLLRRFVRTKGEPICDPVTL
LDANPSYARVRHNDGRESTVSTSDIAPCPGSPESLEEAFPVAEPEAPVIPDPPVPDDRDEEDAPSVNDTPATSLRRSVRD
RRPPDRFGNWTL
>SZ-63_gag#LTR/Gypsy 306-1364 [Oryza sativa]
MLVFDIAMPPRVSVWLANRGRGRGGGRGRGRGHYNEEVENTQDNEEVGNNSVAESPIPNRGGRGRGRAGGRGRGCGRGRH
NEAASSNQKEDEHMEEEGGSHSAAVSDDAPRAARGMTLTRWTSMRLDTFDGSGTPVNAADWLRKMEKYMRGSRMTPEEKV
TFMPFQLTGQADIWWDGVVEAWNPDRGAITWEVFLQQFRAKYYPESFRDKMSDELNNIQQGSKTVDEYEREFSSIVRFVP
SVANDEREKARKFFRGLNARYREVMGRNPPTIYLNAVEEAQGMEVELQITTAQKNRFGNVTGNEQKRAHQEGGENSQRPP
FKKYKQNQVTQPSSKPRQWGSQPNAASRPTES
>FIV-Oma_pol#LTR/Lenti gi|51980735|gb|AAU20798.1| pol protein [Feline immunodeficiency virus]
MWQSRPYCNRLLGHAGKAAGKLAEGESCCPYQTSAAISNSSINNSESATMSINTAFGSSNGVPYGHLKRDIELIHRPRIL
IYVNGIPIRFLMDTGADITIMNAEDFNILNSIPDGIQTMIGVGGGKRGRKFRRVHLEIRDPNHRAQCLFGNMCILDDNSL
TEPLLGRDNMVRFGAKLVMANISNKIPIVKVKMKDPSKGPKIKQWPLSKEKIEALTEIVYRLEKEGKVKRADPNNPWNTP
IFCIKKKSGKWRMLIDFRTLNELTEKGAEVQLGLPHPAGLQERKQVTVLDIADAYFTIPLDPDYAPYTAFTLPKINNSGP
GERFVWCGLPQGWVLSPLIYQSTLNNILKPFREQHPEIDLYQYMDDIYIGSDLGKKEHKQIVEELRKLLLWWGFETPEDK
LQEQPPYKWMGYELYPRKWTIQTKELIIPEEPTLNELQKLVGIINWSSQIIPGLRIKALTNMMKGNQALDSKRRWTEEAK
KEAEEAKLAIEQHTQLGYYDPQQQLHAKLSIVGPHCIGYQVYQKGSPDKILWYGKMNRQKKKAENTCDIALRAIYKIREE
SIVRLGKEPIYEIPCSREAWESNLINTPYLKACPPQVEYIHAAIMIQRSLSMIKEEPIRGAETWYIDGGRKKGQSAKAAY
WTDKGKWEVMQIEGSNQRAEVMALLMALRSGGEEMNIVTDSQYILNILRQKPDLMEGLWQEILEEIEKKVAIFIDWVPGH
KGIPGNTEVDNLCQTMMIISGNGILDKGEEDAGYDLLAEQDIHLMPGEVRIVPTGVRLMLPKGHWGMVVGKSSIAKQGLD
VLGGVIDEGYRGEIGVIMINLQKRSITLKEKQKVAQLIIIPCKHEELKQGEIELNSERGEKGYGSTGAFASWMNNIEEAE
INHEKFHSDPEFLRTEFGLPKQVAEEIKRKCPLCIVQGEQVMGKLKVGPGIWQIDCTHLEGKIILVAVNTESGYIWARII
PQETADMTVKYLLQLISEHHVTELQSDNGPNFNNAKVEGMTGFLGIKHKYGIPGNPQSQALVENTNRMLKEWIKKFRGEV
TTLDAALALALYALNFKQRGRIGRISPYELLIQQESDRIRDYFSKIPANNIKNSWIYYKDRRDKEWKGPTQVEYWGQGAV
LIKHPEHGYMLIPRRHIRRVPEPCTLPEVE
>EIAV_env#LTR/Lenti gi|320016|pir||VCLJ22 env polyprotein precursor - [Equine infectious anemia virus]
MVSIAFYGGIPGGISTPITQQSEKSKCEENTMFQPYCYNNDSKNSMAESKEARDQEMNLKEESKEEKRRNDWWKKGMFLL
CLAGTTGGILWWYEGLPQQHYIGLVAIGGRLNGSGQSNAIECWGSFPGCRPFQNYFSYETNRSMHMDNNTATLLEAYHRE
ITFIYKSSCTDSDHCQEYQCKKVNLNSSDSSNSVRVEDVTNTAEYWGFKWLECNQTENFKTILVPENEMVNINDTDTWIP
KGCNETWARVKRCPIDILYGIHPIRLCVQPPFFLVQEKGIADTSRIGNCGPTIFLGVLEDNKGVVRGDYIACNVRRLNIN
RKDYTGIYQVPIFYTCTFTNITSCNNEPIISVIMYETNQVQYLLCNNNNSNNYNCVVQSFGVIGQAHLELPRPNKRIRNQ
SFNQYNCSINNKTELETWKLVKTSGVTPLPISSEANTGLIRHKRDFGISAIVAAIVAATAIAASATMSYVALTEVNKIME
VQNHTFEVENSTLNGMDLIERQIKILYAMILQTHADVQLLKERQQVEETFNLIGCIERTHVFCHTGHPWNMSWGHLNEST
QWDDWVSKMEDLNQEILTTLHGARNNLAQSMITFNTPDSIAQFGKDLWSHIGNWIPGLGASIIKYIVMFLLIYLLLTSSP
KILRALWKVTSGAGSSGSRYLKKKFHHKHASREDTWDQAQHNIHLAGVTGGSGDKYYKQKYSRNDWNGESEEYNRRPKSW
VKSIEAFGESYISEKTKGEISQPGAAINEHKNGSGGNNPHQGSLDLEIRSEGGNIYDCCIKAQEGTLAIPCCGFPLWLFW
GLVIIVGRIAGYGLRGLAVIIRICIRGLNLIFEIIRKMLDYIGRALNPGTSHVSMPQYV
>HIV1_pol#LTR/Lenti gi|8885972|gb|AAF80322.1|AF156844_1 pol polyprotein [Human immunodeficiency virus type 1]
KKGCWKCGKEGHQMKDCTERQANFLREDLAFLKREAREFSSEQTRANSPTRREPQGSDNNSLSEAGTDRQGTVSLSFPQI
TLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMDLPGRWKPKMIGGIGGFIKVKQYEQILVEICGHKAIGTVLVGPTPVN
IIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEKEGKISKIGPENPYNTPVFAIK
KKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRY
QYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDIVIYQYMDDLYVGSDLELGQHRTKVEDLRQHLLKWGFYTPDKKHQKE
PPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKHLCKLLRGTKALTEVVPLTEEAELELA
ENREILKEPVHGVYYDPSKDLIAELQKQGEGQWTYQIYQEQYKNLKTGKYARMRGTHTNDVKQLTEAVQKIATESIVIWG
KTPKFRLPIQKETWDAWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGRAGYVTDRGKQ
KVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAHPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGG
NEQIDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLD
CTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGPNFISTAVKAACWWAGIKQEFGIPYN
PQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFR
VYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
>SHIV_gag#LTR/Lenti gi|9629915|ref|NP_046122.1| gag [Simian-Human immunodeficiency virus]
MGVRNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYN
TVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTTETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKL
IEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTT
SSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQ
TLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGPRKPIKCWNCGKEG
HSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLMPTAPPEDPAVDLLKNYMQLGKQQ
REKQRESREKPYKEVTEDLLHLNSLFGGDQ
>HIV2_gag#LTR/Lenti gi|9628881|ref|NP_056837.1| gag polyprotein [Human immunodeficiency virus 2]
MGARNSVLRGKKADELEKVRLRPGGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKILRVLDPLVPTGSENLKSLFN
TVCVIWCLHAEEKVKDTEEAKKLAQRHLVAETGTAEKMPNTSRPTAPPSGKRGNYPVQQAGGNYVHVPLSPRTLNAWVKL
VEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAADWDSQHPIPGPLPAGQLRDPRGSDIAGT
TSTVDEQIQWMYRPQNPVPVGNIYRRWIQIGLQKCVRKYNPTNILDIKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMT
QTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEAMGPSPIPFAAAQQRKAIRYWNCGKEGHS
ARQCRAPRRQGCWKCGKPGHIMANCPERQAGFLGLGPRGKKPRNFPVTQAPQGLIPTAPPADPAAELLERYMQQGRKQRE
QRERPYKEVTEDLLHLEQRETPHREETEDLLHLNSLFGKDQ
>CAEV_env#LTR/Lenti gi|62363228|gb|AAX81904.1| env [Caprine arthritis-encephalitis virus]
MDAGASYMRLTGEENWAEVTMDEEKERKGKDVQQGKYRPQVSKPIINRDTNTSFAYKGIFLWGIQITMWILLWTNMCVRA
EDYITLISDPYGFSPIKNVSGVPVTCVTKEFARWGCQPLGAYPDPEIEYRNVSQEIVKEVYQENWPWNTYHWPLWQMENV
RYWLKENIAENKKRKNSTKEGIEELLAGTIRGRFCVPYPFALLKCTKWCWYPAEIDQETGRARKIKINCTEARAVSCTEE
MPLASIHRAYWDEKDRESMAFMNIRACDSNLRCQKRPGGCVEGYPIPVGANIIPENMKYLRGQKSQYGGIKDKSGELKLP
LTMRVWVKLANVSAWVNGTPPYWQNRINGSKGINGTLWGQLSGMHHLGFNLSQNGKWCNYTGKIKIGQETFSYHYKPNWN
CTGNWTQYPVWQVMRDLDMVEHMTGECVQRPQRHNITVDRNQTITGNCSVTHWDGCNCSRSGNYLYNSTTGGLLVIICRN
NNTITGIMGTNTNWTTMWRIYRNCSGCENATLDRKETGTLGGVANKNCSLPHKNESNKWTCAPRQRGGKTDSLYIAGGKR
FWTREKAQYSCENNIGELDGMLHQQILLQKYQVIKVRAYTYGVIEMPENYAKTRIINRRKRELSHTRKKRGVGLVIMLVI
MAIVAAAGASLGVANAIQQSYTKAAVQTLANATAAQQDALEATYAMVQHVAKGVRILEARVARVEAITDRIMLYQELDCW
HYHQYCVTSTRADVAKYINWTRFKDNRTWQQWERELQGYDGNLTMLLRESARQTQLAEEQVRRIPDVWESLKEVFDWSGW
FSWLKYIPIIVVGLVGCILIRAVICVCQPLVQIYRTLSTPTYQRVTVIMEKRADVAGENQDFGDGLEESDDSKTDQKVTV
QKAWSRAWELWQNSPWKEPWKRSLLKMLILPLTMGIWINGRLGEHLKNKKERVDCETWDKKD
>TCN4_gagpol#LTR/Gypsy 68-4739 via tfasty with TCN3_gagpol, 1 frameshift. [Cryptococcus neoformans var. neoformans]
MPPKGQTLKDTPPSEEANASPVEGDINAQVAAVILHLSKLTSQQSLFGTQGNHKPREVTIPQASSIPNFTGPIRDAPAVL
LHIDRLEKLLRTNSLFSPQDDDAQTEKLRVIILEVANNSIECTALKAWVRTTGRMMEADGESGWDAWTVAFKKAAMPLAW
DQKELRSLLRLQFNQVSDWETFDNQAIQHRHNLMGTDLYPSDTSMATLYRGACPEPLFIRLMTTPEFRNGSLDEVRNLLE
LTVVKYLENRDQPTHARIKPQASVXSQTQPHLAHPISHYYQAQNPLPYYLSPAGKHIRELFAKENRCNDCRKVGHNFKTC
PNRRGPTRVNSRHVDNHEVLIQELTSQLDDHLQLETSIDSDETSYALFHPPLVIQASAAADGRTSIAPPPPLRFLLDTGA
GTSFFDPSVVARLGWKVRKDAVERTVRLAGGKPGPVVRDVTSGTFRVRHAIYSGEGVVMELNGTYDGILGLNFCKRYHLL
DQSPLFRRLLSSSGKVLTGNDVAVPTSPPPVSHDAKISPLAGTDVTVPMRHSKIFHKSKVSTTAAAPNEDVTVPTPHSKI
FHKSKVSQTPVAPQPSAITTKFSAIPSSNSVSLGAAETASYAEIIAQLKNDFAEVFCDKLGDVADFPSITKTKSGVRFEI
ILKPNATPSHAAPYRVPETLLPRFREMIAEHLNAGRLRYSSSPWASPAFLVKKPNGQHRLVCDFRALNNQTVPDMYPMGN
IQDILHRAARRGNLFAKLDCKDAFFQTLMKDDDIHKTAITTPLGLLEWVVMPQGIRNAPAAQQRRINEALQGLAGECCEA
YVDDIIIWGTDSEDLRRNCVSVLAALRRSGLRCSREKSQFYLTETSFLGHVIRPGQILPDPTKIARIEQFPHPTTPKALH
SFLGLLNYLREFIPSLATHASVLHACLPPNTAAEKAYYRHLKEHKGRLQESWQGWRWNYGPKERVAFDALRRAVSTVPCL
TTIDYDAVKAGTLKVFLTTDASKVGMGAWIGVGTTKENAQPVAYDSRSFNSAQRNYSTHERELLAIVHSLDHWRPFLYGI
PVYAFTDHFTLKWFLGQRNLSSRQIRWLDILKDFDVRIEYIKGEHNVLADHLSRHIGSDTLPPTDPALPEPDNCILAPVV
TFAPTLAPEIIRTIAQGYDRENLFKDWLADPTTAPGVSTIPHDTHTLLLLDNRLCIPDVDTLREDLMRQAHEGTAAHLGI
EKTVEVLREGYFWEGLVGDVREFVRACHSCQQANASTKKPVGPLHPLPVPRDKFDDIAMDFVGPLPSAGGHDYLLTITDR
LTGFIELVPCSTTLNARDLALLFWNCWVSRYGLPLSITSDRDALFTSRFWTTLWDEQGVRLKMSTAFHPQTDGTSERSNK
TVGQLLRSWVNRQGTSWAKFLPRISQAMNNTVRRSTGYSPIQLVFGRRLRTLPGMPARPPPFTRESXPTRADWTAAAAQQ
DLFLADAQDNLVLAKHRMAIQANRHRRSEIIYNVGDWVWLDTRNRLKEFKSGDGDFRAAKFFPRFQGPYKVLAAHSDRSV
YTLDLPDSPSGSYTKFHANLLKPYLSSSRFHQTXPLT
>TABARE_p2#LTR/Gypsy 2044-3318  [Nicotiana tabacum]
MKKIMTEKDIQIIQQEEHQDEQSSEQKIIFDANIFEQIKGKELDLSIDKILEVPTIKNWFKRQKEEYYVVSQREHIIDCK
YIKGKAQIPILNKRLLNKEIQDIKAKNPIKYVHLGGTEILIKACFREGIDTPIEIYLADDRIVQPIEKSIISAVRGNLIY
QKFKFIVSANYSVAVDDKNIDKSLVLYWKMSGIELAPGSKIFTARCKNLYVLTTKHKITAKNKINKIKIENPFERIVSVI
DNNDYSYTEIDMDEDLEIVKERLSTSKRINNEMPETSSRSTSRSTSKRINYTTPQKLIEQKIEEINPHHYYITGIMDQRK
YLILINTGQEENYVIRELIPEQEIVTIEQQNSELPKALRKNEETTEKELIIGGIPILINFKIYQGDKNITLGIKWLEKVK
PYKLEDRQLTISYENKKIIIKRTLI
>Tor2_pol#LTR/Gypsy gi|49035818|gb|AAT48680.1| pol protein [Oikopleura dioica]
MLVFSLAAVNDACAFPAATTTSSTPNYFNLDLTINMQGFQLKFRALCDSGADKNILPLNLLPPAVHRLIKPVNMTFNGCG
SMKSVGTIYGRLSHAATSHKFDHVTFYVVKSSFPPIIGREFLTSHPDLARNGFALEGPRLKLTLTSGQQLALPWSTSGRP
AQSLLKTTSTAQLIKDLATNHHVTVDSTLFKGADLDKLVNLLWDYRDIFNKEGDPIGQFRDMVRIPTIAGLTKSQRERPI
PKHQHAEVKAQIDNMAKDGIIEPCPDGKGFHSPLVIVRKKTGGLRICSDFKSSLNQCLDETTDIWPLPQMDHLFANIEHG
HRIFTSLDVSKAYWNLLIDPRDRHKTNFTFDNKCWMYVRLPFGLKFSGDAFCRSISSMLDRVSLKSNFCNYVDDVLAYSS
DCETHVKVLQQIFSACRHFGARLGAKKCTFGQASTAFMGRIISAEGISIPPENMETILALKPPTTRKQVQSLIGNFCWLK
SWVSANLGQPIAENCFSHVMSEITKLTKPSRKFIWTEEADQASQRAKKMLASPKVFALPDFKEPFILLSDASELAAGSVL
MQNIDKRQRLIAVSSKTFSETERKWSATERECYSLLIGCEKFEYYLKGPVGFIALVDHKALLALDKRYLANSKLKRWQTR
LAEFKFTVQYVEGRSHVFADMLSRPFDRIDTLPTADDRCAGQFYKFSHDERLKVYVPSWICPTEKFKRSMLLEKADSVSD
LFTVKAIIVNDQNPKIPILEMREIEQAQAEDPLICSIRKLVAGSVPVDKWTWPDDIYGALVFKKHASVLSIHDASKLLII
DWGGKSRIVLPDSLVAHYCKSAHDLKGHLGVDRTAQFLSWCWWPHKMDDIRTYVASCANCLKQKGYDMQPSRPDRKHLYR
ATRPHEIIYCDFITLPTSSRSGKRHALTVMCGFSRWLQVYAVHRCRSIDAARGLMNYFLQFDFPRTLSSDRGRHFENELL
ADLCKLLQIRQNLHCAYRPESSGVIERCHKTLKSSLWAMVRDNPRLDWELALPSVVSAMNRSTNAATKVSPYKCIFGRDP
SFNGIAIDNVAAANPASYAQNTAELLDRAHKFVKLSQEAADRDALERGKSKIQPEEITAGHSIMLKREVSAEAKEGRNKW
VGPYKVLASDGLILQIDVDSKLKFVHRHHVVKAKIRPAHLDNDALDLLDEPDPAPASPPPSTAAPNPPATPPREIPRRSG
RQRRPPDRYGTSQ
>CAEV-B_pol#LTR/Lenti gi|418710|pir||B45345 HIV-1 retropepsin (EC 3.4.23.16) - [Caprine arthritis-encephalitis virus]
TRNHMSQLWKERTYAKRMQRKERHKGKTAGKREEGDTCGAVRSSYGITSAPPMVQVRIGSQQRNLLFDTGADRTIVRWHE
GSGNPAGRIKLQGIGGIVEGEKWNNVELEYKGETRKGTIVVLPQSPVEVLGRDNMARFGIKIIMANLEEKRIPITKVKLK
EGCTGPHVPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLTEAQLGL
PHPGGLQKKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQ
HPEIQFGIYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTI
TLNKLQKLVGELVWRQSIIGKSIPNILKLMEGDRELQSERKIEEVHVKEWEACRKKLEEMEGNYYNKDKDVYGQLAWGDK
AIEYIVYQEKGKPLWVNVVHNIKNLSIPQQVIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRLELQLGNITWMPKFWSCY
RGHTRWRKRNIIEEVVEGPTYYTDGGKKNKVGSLGFIVSTGEKFRKHEEGTNQQLELRAIEEALKQGPQTMNLVTDSRYA
FEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYISEIFLAKEGEGILPKREEDAGYDLICPE
EVTIEPGQVKCIPIELRLNLKKSQWAMIATKSSMAAKGVFTQGGIIDSGYQGQIQVIMYNSNKIAVVIPQGRKFAQLILM
DKKHGKLEPWGESRKTERGEKGFGSTGMYWIENIPLAEEDHTKWHQDARSLHLEFEIPRTAAEDIVNQCEICKEARTPAV
IRGGNKRGVNHWQVDYTHYENIILLVWVETNSGLIYAEKVKGESGQEFRIKVMHWYALFGPESLQSDNGPAFAAEPTQLL
MQYLGVKHTTGIPWNPQSQAIVERAHQLLKSTLKKFQPQFVAVESAIAAALVAINIKRKGGLGTSPMDIFIYNKEQKRIN
NKYNKNSQKIQFCYYRIRKRGHQESGKDQPRYCGKGKEPIVVKDIESEKYLVIPYKDAKFIPPPTKEKE
>Tngr1_pol#LTR/Gypsy-Cigr   from_retrobase [Tetraodon nigroviridis]
PAAPPGPVDGKLAPTELPSHTLVGAATGSRCVSDDASKLVSACPHVQVTMGGVEVSCLLDTGSMVSTVTESFFNQHFALW
GQEKLQACHWLQLRAANGLAIPYIGYLELDVELCGVTLSCCGVLVVKDPPGGALCDVPGVLGMNIIRRCYGELFGMHGPA
LFKFSQVSKAPAPVLQALQKCHQASPKTSLKALSRVKVRGKKACRIPGGSMKVVVATCDEQYAGVTSLFEPLSSGLPAGL
LVSPAVVHIERGTAYIPVVNVGSMDVWLYPRTTIGTLDEASLVSLPASVTEVPSMVATVSAHSVSEAVRNQIEAVDLSPL
SAGEQGKVRALLKEYESVFSTHDGDLGCTDLVTHDIPLLDDVPVRQRYRRIPPSEYEVVKEHINQLLEAQVIRESSSPYA
SPIVLVRKKDGSLRMCVDYRQLNQRTRKDAFPLPRIEESLDALTGARWFSTLDLASGYNQVPVAETDKSKTAFCTPFGLF
EWNRMPFGLCNAPSTFQRLMQRMFGDQQCQSLLLYLDDIVVFSATVEQHLERLQMVLDRLKQQGLKAKLSKCCFFQREVR
YLGHVISDQGVSTDPAKVEVVANWPLPRTASELRSFLGFASYYRRFVEGFSRMAAPLHRLVAAIGGTKSRKGSEQALASK
WTPECQQSFADLKAKLTTTPVLAYADFSRPFILEVDASHCGLGAVLSQEQGGKVRPIAYASRGLRPTERNMVNYSSMKLE
FLALKWAMTEKFREYLLGQRCVVLTDNNPLSHLSSAKLGATEQRWAAQLAVFDFEIKYRSGRSNRNADALSRQCPSGVQD
LEAMLPGTPLPGPLQEVLRPQPIEATQTAISALPHQSPADMVSLQQADPTFQEVRGFLQQKRRPNLEERRRMYQPALVLL
RQWDRLVERDGVFYRQILRPDGAEPVLQLLLPASMREEVLTEVHQRHGHQGVDRVLEVLRRRCYWPGMASAVARWCQACE
RCQLAKDNQPPARPPMGHLLASQPNEILAMDYTVLEPTHDGLENVLVMTDVFTNYTVAVATRDQRASTVAQVLVTEWFSR
FGVPARIHSDQGRNFESLLIRQLCALYGIEKSRTTPYHPAGNGQCERFNRTLHDLLRTLPVSRKRDWNSLLPQLLFSYNT
TPHRSTGESPFFLMFGQEPRLPVDFLLGRVSGPVAGGVHDWVLEHQTQLQVAFEGARERLQISAKRRKESHDQKVRGGLL
IEGQLVLLRDFGVRGRHKIQDLWGSVVYKVVKVPKEEGSVYTVAPVNDPTKVRRVHRSLLRVWVGADPSAVVPHNPVHPT
EQLQSDDDTMWDGELLVWSREAPRVSPPGGRVTPSTFQPPSPAHDADVVAPGPLVMPMAEVVNAPVGQASRPDHCPESIR
RTTRSTAGKHSNIHHLPRSIEDLASGAGQPTGSMSSAVSAIFRPWN
>BEL-638_AA#LTR/Pao 489-5972  [Aedes aegypti]
MSKMSMTRTPIVTRSGKKKSSALEDTVCEDKTTGGEDSVNGNATPVKASNQNSDQVSISEQKKNEKNKEAMKKMAAEYKV
LKNQMSALKRKLVRVKAAMEADTDDPNQNLDCKQFLQLQLKVVESVNDDYNTHQQRAHGLDIGDDDRDELETLCIDFEEL
YGELYIVLNKLLETSSKKDVISVQLPASPTANMSQLPPLKVPLPTFDGSYENWYAFKSMFETIMARYSSESPAIKLYHLR
NSLVGKASGIIDQEVINNNDYDAAWATLTERFEDRRLIIDKHIDALFDLPKLTDENATGMRKLLDTCTKNVDALKNLGLP
VSGLGETMLVNRIALKLDHETRKAWELEQVSTTLPTYESTLDFLRERCRVLEKIRPLSRPPVKTPSKPPLRSAVGSQVRA
SSLVTTTEICPQCSGSHELWKCDVFKKASIADRYDTLRRVGACFNCLQKGHRTTDCSSKNSCKKCNKRHHTTLHPADRRQ
RKAEDSTPETPQPRPEKKPTPTPSTQQIAETNDTEVQTALCTHSKGEGKQVLLSTAVVLVYGKADVYPCRVLLDSGSHSN
FVSEHFATLLSVKKDSANVSICGLNDINTTVRLKIHTKIKSRISDFTACLDFFVVPRITGHLPPSRVNCSNITIPNDIQL
ADPNFSIPDRVDMLLGAEVFFEMLKSGRMRIPNTSAVLQDTQFGWVLSGPIPSKALEQQQSFFITAEENLDEIVRNFWQI
ESCCEPEVKTGSDDEICVDHFRETHQRTAEGRYVVRLPFNDAKDQLGDSKTMAEKRFFGLERRLDKAPEVKTQYVNFLRE
YEALGHMTQIDEEEGDDFRPAYYLPHHYVLKPSSTTTRLRVVFDGSAPSDTGISINETQLVGPSVQNDLISILLNFRSYK
FAFSADIPKMYRQVEVHEDDVRYQRILWRERQDQPIRIYDLRTVTYGLASSPFLATMALRQLAEDEKDKYPLAAEAVIKS
FYIDDVLTGASSLEEAIELKDQIIGLLKRGGFEAHKFCTNSEALLATVAEDQRESCVDITDPSVNAIMKTLGVSWSPKED
RFTFVVPDNTNQAVQLTKRSILSQIARIFDPLGFVGPAITAAKLILRELWSMNLDWDQPVPHELAKLWTDYRDQLHSLNN
VKIDRWLYSDGVHAYELCGFADASDMAYGACLYARTLRTDGTANMILVCSKSRILPRKKNKQKEITTPKAELLAALLLSQ
LTAKVLEAIDTNFNSVRLWSDSQIVLCWLQKSPDSLTVFVGNRVKQIQQLTVGYTWQYVASNENPADLISRGIAPSKLGN
QKLWWHGPPRLASSQPFYDQPPALSEDQLPELRRTALVSAPEHSRLPIFDRISRYMIIQRAMAYVIRFCDYIRSSRSQLT
KGLPTVSEMQRASTLITRLVQAEVFHKEIQAMKDGKQIKLPFQNMNPFIDADDGVLRVGGRLRNADIPYQHRHQAFLPEK
HPLTINLIRYLHHTNLHLGQRSLLGVVRQQYWPLKARNVIRKILHHCIPCFRMRPKKSTQLMGDLPDYRVKPSPVFSHTG
LDFAGPFNLRSSAISRHPTTTKGYVCVFVCMATRAIHLEAVSDLSSDSFLAALQRFVSRRGLVQKLYSDNATNFEGANNQ
MRRLAELFHDEQHIRAVNEYCAPRGIEWSFIPPRSPHFGGIWEAGVKSVKSHLKLILAENRLTFEALSTVLAQIEAILNS
RPLTPASDDPNDLNAITPAHFIIGREFQAIPEPSYASIPQGRLSRLQFIQDMKQKFWRRWMNDYLHELQKRQRDLKVTEF
KVGAMVVIIDENAPPLKWALARIIELHPGKDGNTRVVSLRTENGTTKRAVKKICLLPLDDEKDDQNM
>BEL-635_AA#LTR/Pao 33-5982  [Aedes aegypti]
MEDLRDSIDGHNCKRCTRPNSAEDQMVACDKCHEWEHFGCANVDGNVRDQSYVCKECTGETSGQLHKGTAGRENRPKHSD
SRSVMTTRSKTKLKTPVGSQAGSRVSERVAVLEAELKIVEEERLAKEEEMKEKEKMKKKEIEERKRQLEEKRKLLEEEAE
LRQLQLAEERKIQEEQQQIRQDSLTKRKALLRQIAESNAGSKCASEVDVQDNVSSWLADLQLTGRPLECGEDNQGRHKEV
VNPSPTGIPTGPVDAVNPQVTSRMGVKNPVVHHVYQTNPNGSTRFSPPNPVQRDLNYQHALHDNPWIPSRYRAMATEEPI
GRMVENNTPTVLGAEHIAARQVMGKELPTFCGNPEDWPIFICCFEQTTITCGYSDAENLIRLQRCLKGPALEAVRSRLLL
PSSVPSVIETLRTLYGRPELLIRSLLRKVQQVAAPRHDRLESVMEFGLAVQNLVDRLEAAHQESHLTNPILIQQLVEKLP
GPLRLDWGIYKKHYPMPTLRTFGKFMSQLVSAASEVTFDLPVASGGFKNERYKPREKAHIQAHSIGSAIQTSSSSKFSTN
SRKTGKICVVCDCEGHRVCDCLKFKAMNVDERWKTIQHKGLCRTCLNNHGKWPCKSWQGCGVQDCRNKHHTLLHCPVPSA
PSHSVNVSSNVSMSSEGTYTFFRVLPVVLHYKEQSVMVFAFIDEGSELTFLDASVASQLGVNGENEPLTLKWTGNVTRRE
AKSQKVHLEISGKKGKTKHQLVGAHTVSSLSLPSQSMRYQELAKKFPHLRGLPIEDHARIQPQLLIGLDNLQLGVPLKIR
QGRQGEPIAAKCRLGWGIYGSKPDAGSSQAVINFHMTEVDNPDMLLNEQLKNFFTVESMGTEGTQAKLESDEDKRAKRML
ADTTRRTSSGFEVALLWKTDNPELPDSYSMAARRLQSLEKRLKQDPSMKQKIREQIAEYERKGYAHRITNAELETADPRR
VWYLPLGVVVNPKKPEKIRLIWDAAAKASGISLNSQLMKGPDFLSSLTAVLIQFRHFPIAVSGDIREMFHQLKMRAEDQQ
SQRFLWREDPSERPEIYVMDVATFGATCSPASAQYVKNVNAAAFSDQYPRAVIAIQKYHYVDDYLDSFETIQEAKQVVKE
VRTIHAEGGFELRNFRSNSSELLRSIGEKTSNNIKDMTLERSAISESILGMRWVPVEDTFTYTFSLRDDLRTILENNHNP
TKREVLKILMTLFDPLGFIAFFLIHGKVLMQDIWASGCDWDEQINEALCIRWKQWTRFFPQLDALRIPRCYFKSLVPGDK
NQLQVHVFVDASEGAYACVAYFRLATGEDVSVSLIGAKSKVAPLKSLSIPRLELKAAVLGVRYLESISNQHSFKVHQRYM
WSDSATVLAWINSEHRRYNKFVAVRIGEILTSTEQKNWRWVPSKLNIADQATKWNEGPKLQSDSQWFQGPSFLHNAEEEW
PRQSKLPLTEEELRPNHSRVLHHKHHQPIIDVSRYSKWIRLHRVMAYVLRFLDNVQRKVQGIPLQVGTLQQEELERAECE
LWREAQSEVFANEIRVLSSSKGGPDDQHLTVNKSSPIYKTWPYVDDKGVLRKRSRAGAATFMSFEAKYPVILPHDHPITF
LLIDWYHQFYRHANRETIANEVRQRFEIARLRSLIYKVAKSCVWCRVMKAKPQPPIMAPLPEYRVTPYVKPFTSVGLDYF
GPLLVRVGRSQVKRWVALFTCLAIRAIHLEVVHSLSTESCVMAVRRFVARRGSPAEFYTDNATCFQGASRELQEEIGNKL
STTFTSAHTKWRFIPPATPHMGGVWERLVRSVKVAAGTILEAPRKPDDETLETILCEVEAMINCRPLTYIPLDSADQESL
TPNHFLLGSSNGSKMMPMEPLKFIGNLRSSWKLAQSITDSFWTRWIKEYIPIITRRSKWFENVKDLEVGDLVMVIGGPSR
SQWVRGRIVEVVKGKDGRVRQAMVKTSSGVHRRAAVNLAVLDVLDEAKPGNGSSDVPGFTEGG
>CATCH3_DR#LTR/Pao 209-6232 [Danio rerio]
MSLMNCDDDGATTCEQTETIVPFEKFETEHVREKRLIKLTPKALLEKLETLQKTRKCKLSKAKNLMAIIKDFMSNREYEK
EVQCSFEKFIKLRDETKEMHNSVMVLLPSEEKEKQQTWFNGKMLICDEFVDDVEKWLSAESQVSCSGVDARVCQEDVNPD
DSISNISSCKSSKSSSKKSSSSVRSGRSSAASARIMAEAEKAALMARAAALKEKHTLEVQQEKLRHRQEQLDIDAEIAAA
TAKIAVLNNQSLKTCTDDMNAYCDKGTVTLNPHAEAYVPIEVPLQESSRNVIQQIHSVPQIDPHFTSQMQSSSVMQNSDG
IITSNLCSILQKQNEITTLLVQQQQSSTLPQRDIPVFDGNPLQYKTFMRAFEHGIEDKTKNSRDCLYFLEQYTQGQPREI
VRSCQHMDAQRGYVQAKALLKEHYGNEFKIASAYVEKVLAWPSIKSEDVNSLQSYALFLRGCCNVMEEIDYMEELEMPSN
LKTIIMKLPYKLRENWRTVACELMERRKQRARFKDIVIFVEHQVKMSSDPLFGDIQSTQPVQQKFQPKTKVRNSFATTVV
TNNKSIQCCETDLRSKAPVVCLCCKRDHLLEQCTQMQNKLHKDKLNFLKEKGVCFGCFSFGHISKRCDKRLTCTVCGQKH
PSILHIQQKERVCTQEQSHSSLSSAHVALTTCGQTGAGDDGDCALSIVPVQVKSSKGQTVIQTYAFLDPGSSTTFCSERL
MHSLKLKGKETNIVLKTMGNQRAVNSTVLTGLEVSNLLDDTFYSLPEVFTQERMSVSRDNIVTQKDLENWPYLKGVEIPQ
IPADVDLLIGANASRVMEPWEVINSNGDGPYAVRTLLGWVVNGPLQGSRNKVKCSGVTVNRISVRKLEDMLGKQYNHDFN
ENSVEKKEMSREEHAFMEKVSKSIEFQDGHYKLNLPFRMEIPMLPNNLCVAKQRLIGLKRKFERNKIFHQEYKDFMDEVI
KHGYAEIVPLHQLKQDEGKVWYIPHHGVYHPKKQTLRVVFDCGAAFKGTSLNDQLLQGPNLTNSLLGVLVRFRQEPIAFM
ADVKAMFHQVKVAEEDTDFLRFLWWPDGDINQDSVEYRMKVHLFGAVSSPSCACYALRRTAEDNKDDFPEKVIDTIHTNF
YMDDCSKSVPSEEEAVLMIKDLTDVCLAGGFQLIKWISNSRIVLQSVPEEHRAQGIKMMDLDKDQLPMERALGLWWCVES
DTFNFKITSKDHPCTRRGVLSKVCSVYDPLGFLAPFTLTAKILLQELCRIRCGWDDLLPSNLQRQWSLWLKELEKMADFK
MDRCLKPAGMDELTNVQLHHFADASTLGYGTVTYLRMETKQDVHVTFLLSKARVAPLKSVTIPRLELTAAVLAARVDKML
RAEMQFPLVDSVFWTDSTSVLKYIKNEDKRFLTFVANRISAIREITTPLQWRYIPTTQNPADCCSRGLKADQLLTNREWI
NGPSYLWKPVEEWPAQIFDSALKADDPEVKRNICVNSTLVSEQSNATHRLITHFSDWTKLKVAVAWLLKLKTVLKQRSQK
RKEIQASLDSSGVTSKKTEKELRKLTGSVVTPNLSLQDVNEAEVAIVAFSQRQQFKKEIDALSVSPVSKISRDSKLYKLD
PVYQDGILRVGGRLRNSAMPEERKHPIILAKDQHIATLILRHIHQQLGHSGRNYMLSELRKRYWIIKGNAAARRIISSCG
HCRRFGVKVGEQKMADLPKERLLPDLPPFSNVGVDYFGPVEVKRGRSIVKRYGVIFTCMASRAVHLEVAYSLDTDSCINT
LRRFICRRGQVTQIRSDNGTNFVAAEKELKESLRSWNQNKIQRAMLQKGVQWSFNPPGGSHYGGIWERVIRMVKIILNSI
LHQQILDDEGFHTVLCEIEAILNDRPITKLSDDPNDLESLTPNHLLQMKGKPVLPPGLFEKSELYSKRRWKQVQYMCDLF
WKRWTNEYLPLLQDRQKWNKERRNFVPGDIVVIVDSSAPRGSWLMGRILEVFPDKNGLVRSVRVQTKTSVLERPVTKLCL
LYDNMEI
>CER16_CE#LTR/Pao 1540-6496 via tfasty with CER12_CE, 1 frameshift and 1 stopcodon. [Caenorhabditis elegans]
MSSQQLPEVLPNDTIPNGAIPEASAAIQPGNRAVTASGDPTGMSSRGRPRHSHSSKTRSPAAPIKGYITRIINQSRLCHN
EASRLMLEHFGVNPDPSSPIEEEVLRAANQAVLKTRRYAEALGNLCQYVDDKFQEPALRDSPLRDAYHREVQRHLAELDP
QSILTEINRDIVMLDRELTDHGFPSSSKFATRHVLTPYEYESSDIESSSDLRSIDDAFDGLKRYMGTNHVLHTGTAPVAP
AECRATIHRGTPPPYDSSNLNYRTVSQFTARTPTRSSDDDVWSIQQTLADELAEERRQRRLEQARSRALEERLMERQRTE
NVQRAEETPILDQPRPPVTAGYPTQPLPVDAVLWQTVLDMGQLLTSLREEQATVRQHLASFMHDVTERLRAADEGNACPQ
ESVVDESEAEEERSGPPPTPQADTNIHSSYGVINFETNTKNLPKFDGTGNFRAFKNGFNTVVLGSRLPAVTKYNLLQNHL
IGKANQCVSTHDDPSVAYKTTMDMLESVYGRGDTQRGLLERLRKLKFSQSFPEQMRLDLTSHHLLVQRLVATGLSVSDDR
LIMGIIGKLPLSFRDKVTEFYTELGEHATATSLYQRIRKHIDSFENGLIAASMSPPQVVPVNEIPAQYAEASAFHVQEQK
PTGYSLNGGFTPKTSKPIFNINEHSGSYVDPISGVTLKGYFKPGTRGVNLNRIHSTFPLSDGTASTPCAACNGSHSPVRC
YLPSHAFRKALEQKGLCPNCCKSHPIEKCTSLYxCVYCDGIHHSGGCPLKEHFRDMANYPPGARPASSYFVRSLFAARGE
LATPPTKSLWAGTGPTAQRPLSNADSQSACCYDVLFHCNSSSSVIVVPSMSLLKIKNSNLNLNITDTCRPEEQLVSEYAS
FPSCKDIPHLVTTIRDPGDDKVTLMRFYTDANQPLLALVDSGASLSLIQYRKAIRISLKSSGSATLLLQGFYDASTSVSP
NIKTLNIIVTSPLAEKKRISKFAAFLSWTDVPHREVDKRDTGSDKLYFTCLSTDSNHTSLALVGSGASFPLVQHRNTKQI
GLASTGSITLSEQCYRNAWTSVAQIKFKIKIRSISVSLSIAGFGNLPSPTFRDLSFSEQDTVYLDYLKIDHAAPSVSNGR
CMDLIMGESATSTSHDEHAQHRQLPSTLSVDNRIGLIYAENNGKWVFDTFVALIYSILLANTVLHGPTANSELKFQSSLK
QMWKLETLGVDPILLVDGAKNSTSDSLTETEQTTTRTFGQLEFALPLNGIESKPKIQYAIAYTSMCSLAQTFANGQNLIQ
KFHQVIKDQESANIIERVTPDMAQEPSQPITDDNLCCYRFTRIPFGVANSPFLLAVAIHHFLARNPHELNDEITENLYVD
NCLLKLLGLEWNSNDDSIDTRSVKIALLDIDHPTKREVASNMAQTFDPLELLTTSQVLINRLIQYTWIRGVIWIDRILIE
LLPRWRAFKKSFLDSSSYVHRQLTHATDAYTHFKYEDWVPSTRLISSTSGAAPNYTSPKLELIGTLPFHFVDSLSNIKNI
KIRMPTITCTPAPHGLVQTSIHYALEHKIETMPCIENHREHPTYRALPHTSIGEQESELEDVDYDIPNPEFSDSIPQYAD
PDTTTPDQLTDHAEANLPVGRSRDYIPRKAKAPYINYVHTLVVTSPSSSSPP
>CER12_CE#LTR/Pao 4224-10923 via tfasty with CER11_CE, 1 frameshift and 1 stopcodon. [Caenorhabditis elegans]
MNSKFDDQSQVLPEASNTTGELPTAVPKSQPAASTQKIRGRGRPGKLRSLAAPIKGYLTRVTNNAKFYHLQAGDIMLDHL
GTTPDASNPVGDNVLRAADLVIVKTRQYLEAMENIRTYVDDKFQEDALRDSPHRDAYYREVQAHIETINPQKLISDAKRD
INMLEQELNARGFPVTPKITEDNNITPYEYESSDLSETDNEDLEEVDNAFAALKEHMGSEHITIPNPTRHDEPRATIPPS
IVSPSNHNSSTRPHRSASQFSATARFRDSDDDAWSRKPSLAEELEEERHQRRLAQKKVRALQDTVQGYQQAAEQSQELEQ
QQVQELREMRAARQRRMDALHRERQSSPIPTLYLTPRPRTRDAPSPQNFEPHASETAQITGCPVQATTRLTGNNTTEILG
LNEMLAFMPEMRSSISQLRADQQELARQNASAINELRNDRNGLATDQTSEQDQVDETPVESSHTPPPPQINPDARSLFGV
INFETNAKNLPNFDGSGNFKAFRNGFETVVLNDARLPEVTKNNLLQNHLIGDAAQCISYDDDPTMAYQMTMKMLESVYGK
GDTQSGLLQKFKCLRFHQTNTEQMKLDLTAHRLLAQRLKTTGLSQFDARITMGIIGKLPPTFMGKAALxRTITEICLTIP
KTPQPSSSYFETSLSTERGETANSLPPNKYLWAGTGSKVQNPLPTAALPTAPINSVSITNSHYPRGSDTRLALSYETNTP
NSTSHVSEFAAFLSRTDVVHQVTNIKNAGNDKLTFICLHTDKNQPLLALVDSGASLSLIVHDTAIQIGLTSVGSASLSLQ
GFHDESTSVSHIFPLRLKIHNSVMSMGFLIAGHAQLPSTQFLAPVLSDNDKNCLDLLKIDHRSITAQKTHNGKPIDMILG
NDVLASLYADSHTKRHQLPSRRVIDSTRIGCIVHPVPSMVIHTEENHTWILDETIKPAHSIMHADMVLSGQSAEDPDLQL
HWQIEQMWKLENIGIEPIPLVDSSKMSTKDLLAEFENTVQYSNGQLEVALPFNGNESKLKNNYAIAYQRLKSLIQTLTKG
TSLIEKYHKVIMDQKLSNIIERVTPEMAQDSPIEYFMPHRAVIKESSNTTKLRVVLDASSPIGREFSLNDCLHAGTNLVT
PLFGILIRARCYRYIIVSDIEKAFHQVRLQKAFRNVTQFLWIQDPSKPTVEDNLCRYRFTRIPFGVASSPFLLAAAILHF
LARNPHRLNSQIRENLYVDNCLLGTNEFNEIMKTAMAAKAIFKKMEMNLREFVVNESIIMDRMKAEDKAESREIKLLGYT
WNSNDKVDSLSVKIAVLDIEHPTKRQVASKMAETFDPLGLVSPLQVLFKRLIQQIWISGVKWKDKIPVELLPMWKELQQA
FIDKSVHVPRRLTFVNDECEEIHLLVFTDASQDVYAATVYAHHIYKKWEPVTLIASKNKIKEVSATNFTIPKLELLGILC
GSNLAVALTKELRIPIASIKIFTDSSCALYWILSSKNKRPWVHNRVSKYYENRDIMLQCGIPTTIHQVPTKVNPADLATR
GMTTTELQNSHLWYKGPKFLRKPPEEWPQKIEGEVSCPAKFRDLVYSEIVDSSSKKKRKPLIEKPLQDTEIETVLHVSTS
LQEFEPLIPFHYTNSLTKLTSIVYWRLTMLCKLLPKKVWESDTMLAFSNCTSYLMRRKLARKIIILQHYKESEALGLKLP
PDLECYTDSHGFLRVLKQITSNALPQEANEPVVIYKDHPLAALIMRETHVINGHSPELYTVSAIKTLFWIPHVKALAKTV
VSSCVDCKKVHGLPFKYPHSKTLPDTRTEPSKPFAKSGLDYMGPVEYIKDDGITKGKAYVLVYTCLITRGAVLRVLPDAT
TETYLMGLRSIFHTVGVPTDIYSDNAAIFKLGASMINQDIIYGDEMSESLTSYLAAQKINFFNTTPLSPWQGGVYERVVG
LAKHQIYKVSKLEHIDMFSLQYLVSGAQAMINSRPLTPHARSPNDMIALRPIDFQIPGVMLDVPLVQPEANGRGAEQRAR
SHLARLEAALNRLWQIWTLGYLFHLRKAKHRNKKCTALRPSAGQVVLINTNNVNRHKWPLGVIIQVHESNEVRTATVKAH
GKLYLRSVCQLIPLEVQASDDFIPSVDTPEEADSEPEEHECGDFFQPPIPGLALFDSPNTQYAPEAFPPDTMPSIENQLN
PKPNSTGSFTDRVANHDTIGDVNLSTEGIDYNLPNPEFDDVLEYEDPNNATTPETDHAEAKSRQNQGLHPSEG
>BEL-633_AA#LTR/Pao 77-5470 via tfasty with BEL-87_CQ, 1 stopcodon. [Aedes aegypti]
MTSTPTNESDFAKDVFSTPIGNQKRSHAEKQRLKKMAEEVQAVIYQRGAVKGKLTRIRNALQRVVQEQVAPDEFLLRTHL
KTIDAAYEEFNVFQNKLYALAPASAEEQEAKYIEFEDLYNEVRALVCRLLERVKQEANRPAANQDVDPVHVPVQQIHPVR
ASPLLNTPLPTFDGKAENWFRFKAIFTDVINRYPGESDATKLYHLDKCLIGDAAGVIDQQTINDSNFDAAWEYLTERYED
VRKIVDIHANGLLHLKAMTAESGKQLRTLMDDCKRHVEALKFHEYEVSGLSDVLLVNILASKIDLETRKLWEGSITHGEV
PTYEETTAFLVKRCQILERIEENSAATKQKKPVSTTAAKVPPMKVTTLAASAELRCNFCEESHNNHQCKEFLKLNPSERF
EKAKQAKVCYNCLRKGHTTARCSSAMSCKICKKRHHTTLHANVVTTTGTVNAQTSTTPQNAPEINASEPASNVNTTVAST
HTISASCVSYQQRALLCTAIVNVISGDGVTQPCRVLLDCGSQVNLITEKLAGLLQVERKPANVQVIGVDGATTRVTAAAS
VHVQAISNGFTSKIECLVMKRITGPIPSSFVDVASWPLPPGLQLADAAFNRPQRVDMLIGVGHFFDLLKSGKIKLAENLP
FLQETVFGWVIGGIIDSSSSNYKMVRCNVAVPEENLEKLVEKFWESEEVATSTRMSPEEVACEQYYKQTTTRDSEGRYVV
KLPFRTNVDQLGESRQHALQRFDYLERKLSKNAELKKAYCDFMAEYIRLGHCRILREEEDASIGYFLPHHAILKPSSSTT
KLRTVFDASAKTSSGLSLNDTLMVGPTIQDSLVNICMRFRIHPIVFTSDISKMYRMVSVSPDQTKFQRVFWRTDPSVPLK
ILELSTVTYGTASAPYLATRTLHQLAQDEGHNFPKAAKILVKDFYIDDVLSGANSPQEAVEIHDELVALLHKGGFELHKW
CTNSPELLASIPEELREKQVAFEQHDVNNVIRTLGLLWDPSNDQLRFRVAPPDHAQQVTKRFILSEIAKIYDPMGLLSPV
VVVAKLLMRQLWRSKLSWDEDVPATLSEPWRRFRDGLESLKNLKIERLIISPRRIAVELHAFSDASMEAFGTCVYLRSIL
EDNTVEVRLLASKSRVASKATIPRLELCGFQLMARLVNQVEAALQIDFDRKVMWSDSQIVLCWLRKAPHQLSVYVGNRVA
EVQERTSSFEYLFVRSEDNPADLVSRGLEAEDLARSEIWWNGPDYLRLNAFEEQTLEHGVLHCxFLCRALEEVDNLPEVR
VAMVTAINDMSVLTKFSSFRKLQRVVSYVIRFINKARNRRTAGDSLKFATVTEMRLALTAIIRMVQQQQLFVEIQQIKKL
QTNHDGERYVGRLRTLNPWIDDDGILRVNGRIKYANVNYEQKHPPILPAEHPVTKLLIQAIHNENLHVGPSGTLSIIRQR
FWIINGRNAIRQQLRKCIICFKVNPTDTKIYMGNLPSYRVTQANPFQRTGIDFAGPIYVRKGHPRKPVYEKGYVALFVCM
ATKCIHIEFVSNLATSSFIAALHRFVSRRGLPSDIYSDNATNFAGASSELHELYVLLRQQQTVEALEEFKMPREINWHFI
PPRSPHVGGLWEAGVKSAKYFLKRTAGEAKLTEEEWHTLLVQVEGLLNSRPLIAQSSDPSDYNVITPGHLLIGRAINAIP
EPSYDQLKAGTLSRWQHIQKMRSDFWKRWSVDYLAELQQRHKWNKNHTEVKVGDLVLLREDHVPPAQWKLGRVVDVHPGK
DNVTRVVSVKTTSGVYKRSTAKVAVLPLDVPEDKAITN
>BEL-598_AA#LTR/Pao 26-6861 via tfasty with BEL-20_CQ, 2 frameshifts. [Aedes aegypti]
MSNPPRLSMIRQTRSKTRAAKESVNPNLQVETDSLEEKHSSNSFEPSIIDVEGGDKIECGGCNKPNNAELFMVQCRCCSR
WYHFSCANVKQSTVRKEAFACKLCVLPASSRTSRTTTSSVRQARIARELEHLEEERKLLERMHEEELAEKARKDKFEREN
QYIAKRFDLLRQQDEQEIASSASSRRSQHSRPASQNRIQNWVDDVARVAHGVGGLLPGNTVIVNERDFDPNVIVANEGHA
SSTPVRTPLPNTASGLVQPAPVRLRLNDKSRELAFVPPTTGSIEIGETDEDESKDIGAIGGSNRKRISPALSFVDVVGPL
DDLLNKPAEMQSKTGTIPKLKTHVTYEQWRSRTTNLEMEKEHLKQNDIRRQRELELVNQLNRLEMQKDDGELRNLELIQQ
MKEHEQEKQRIIQQKQRECIELEQQMHRQSQEHGNLIEQQQKELEHLRCVEREYRNYTQNQENRFKHPASMTVNRGDGIS
NLRPLTGLPISSIPNSVNLREHIELPRQEDIWYISGYQQKSLPAFGNISTHSSGFPVSDALQSGTLPPSHDVRFRDRSSN
VPEINTPVGGRSNFDAECRSTDNFSVRHNQLQYPVFNSPVSAPPVLNNVVIPPQLAPTPQQLAARQVVNRELPIFAGDPI
DWPLFISSYNHSTQACGYSDSENLLRLQRCLKGSAKEAVSSFLLHPSTVAQVISTLQLLYGRPEQIVQSLIAKVRNTPAP
KNERLDTLVSFGLVVQNLCGHLKAIGLENHLSNPVLLNELVEKLPTAVKFNWALHQRQLPVVDLSAFGEYMANVVSATSC
VVSWNGGASKGIKDDRARGKDRAYVNAHSNPGSSEGRREYTGESRENIVAQKEPSNTSGNTPLCPSCKNRGHLIEACGLF
KRISIDDRWKVVKENRLCGRCLTSHTRWPCKGQVCGIDGCPRRHHRLLHDKNSSVPKQIDTGKNVTVSLHRQPSSFNLFR
IIPVTLYGRKGKLDTYAFLDDGSSVSLIEDKIAEALGLEGVAESLCVHWTGGIKKNYSNTRMVSLQVSGEGIDKRYQMSE
VYTVRNLGLPEQTMKIRELADEFEHLKNLPVRDLDSAVPGILIGHNNVHLLACLKLREGREQEPIATKTRLGWVVYGSRR
AAEINFPHRQMYICTKQDDQSLHDYVRSFFALESLGVAVVPEVKGSEEQRALSILNESTVRTSSGRFKTALLWKYDEFEF
PDSKLMAVKRLECLERRLRKNPDLYDNVRKQIAEYQEKGYSHKATEEELQRFDPRRTWFLPLGVVLNPKKPNKVRLVRDA
AATVDGVSLNTMLMKGPDLLTPLLHVLFTYREREVAITADVKEMFHQLLVHEEDRSALLYLWRNSTESALDTMVMDVAIF
GASCSPTQAQFVKNLNAKEYEHQYPRAAIAITRRHYVDDYLDSVDSVDEAVELITQVMEVHDKAGFHIRNWISNKEDVMR
AIGEVHPTVVKTLTLDQECGGERLLGMIWRPRDDIFSFTLNFREDLKDILAGDVIPTKRQLLRIVMSIYDPLGLVSTFVV
HGKIMIQEVWRSKTGWDERIPTSILVRWQQWLICLQGMEEIEVPRCYFSGYERCSFDTLQLHIFVDASAEAYAAAAYFRI
VDRGVVRCALVSSKTKVVPLQPLSTPRAELLAAVLGARLRKTIEEGHSLKVHRTYFWCDSSTVHTWITSDLRRYRQFVAL
RVNEILNLSKPEEWRWVPTNQNVADEATKWGKGPSFTSDSRWYRAPRFLYESEEFWPGDQEFRITETDEEVRPAYLNKHS
IMQPLVLVERFSKWERLLRCVAYVIHFVKRIGPQRKTATSNSTGNLSKEELIEAERVPWRSAQNEAYPDEVDILKSNKEA
SREQLKGVERTSSLVKLSPMMDEYGVVRINSRLSAAEFLPFDTRYPIILPKDSYITRLVVDWYHRQHKHANDETVINEIR
QKFHISKLRGRLSFVKKNCNWCRVYKAVPIIPRMASLPPERLTPFVRPFSYVGIDYFGPYLVKIGRSSVKRWVALFTCLT
IRAIHLEVAATLSTDSCKKAIRRFIARRGAPLEIFTDNGTNFVGAGKELANEIMKLNVELSSTFTDAHTQWRFNPPAAPH
MGGCWERMVRSVKVALGSVPTLRKLDEESLSTMLAEAEYMVNSRPLTFVPLATESEECLTPNHFLMMSSKGVKQPVKNPV
GEGAALKDSWSTLQMVLDHYWKRWLLEYLPTITRRSKWFQDVRPIKVGELVVIADEKLRNSWTRGRVIRTYAGQDGVVRK
ADIQTNTGVLQRAVAKLALLDVGRFNDAEAELPSSSGG
>BEL-232_AA#LTR/Pao 32-5602  [Aedes aegypti]
MAQQLRRSRRETRGVVPKRLENYFVQLPHQPTMFRTPVNEQQQNKSIQRTAXHVSAPIGNDAENDPVSGSRISKGAAHSE
RRSKKSLSSRISEADSQLKALLLEEQIEEDELKASIERDKILAEKRLAALQIEQDLALKTEERKAEFLKRKRERELKKEE
LKTGSSYGSSVCSSRGSSSSAYTSVSRRVTKWLTESKTVEASNTNNLESNRIIRPSSREPAANDVPVPEPGVNAILYEAF
KALQGRNVKDLPSFSGDIMEWMIFETEFKTSTEEFRLTDRDNIRRLNKALQGKARKTVESLLSSPDNVAQIMRMLKSNFG
RTEWVVVNRLEALRNLESVKEGNIESFRTFYNAVVGTMVAMQNAKADNYLLNPELISTLAEKLPGFSKQMWIRHKAALMK
EDTVVDFNTFARWLEDEMDNQLASLNPSFGPRKVNYLAKPKPVVFNVNSRDEETPKKCPLCSVGSHFSLDKCEQFRGLSV
AQRRTTARSCKVCYICLKSDHARRNCKSSKKCSVCGKNHHELVHSDESPRSFPPSMPNVCNVNGKNANTLLRVGKVRIKG
PNCVEEVFALFDEGSSLSMMDATVAAKIGLQGPTSSVNYRWTNGISHKEEDSMMLSFDISGPAVQAKWYRANYIRSVQNL
DLPPMNFDIEKVRQLYPMLDEDKLAAVQGARPCMLIGSNNAGLIVPLKTIQYSLHGLQLTRCHLGWTVHGLIEPSDTASF
DNHAXLCAEDDDVELTDLVKQIYKVEDFGITGQSPKMSDEDQRAIDIMNRTITRRGERFEVGQIYKYNNFSFPDSKPQAL
RRLQIIEKKMDSDPDFAEKYCSKIQDYINKGYARKLESDELTETPNTWYLPHFSVESAGKFRLVMDAKAKSHGFSLNDLL
LKGPDLVPALIAILMRARKKKIGFVADIKEMFHQILIRRMDQDSQRFFFRGMDRSEPPSVYIMMVMIFGAVSSPSMAQFI
KNFNAKEMEEEYPGVERAVIDQHYVDDYFDCADTDEEAIELVQRVVETHDHGGFQLVKFSSNSEAFLDSLDPALVADRVG
SRTRVLGIDWDLQTDELVFSLEFPKLIEKFRTGESVPTKRQLLKFMMGIFDPLGFLSPITIHLKIIFQELWRLQSGWDDE
IPDGLVPRWVEWLNETARLKEVRLPRYYFPEIPSFADAEFHAFCDASDKAFACVIYMVHRHKGTSHVALVYAKSRVAPLK
SSTVPRLELQGCVLASQMMKTLQDEMKIEVTKLFFWTDSKICLSWLKTSQKLTAYVGSRIMKIKENGHSVDLWHWVPSQL
NVADLGTKSSKFSNMQEWMKGPDFLLHVSTRWPIDGPLELTPAELVNFHSELTVDATADSLCCTVSEEYPIDLPDIERFS
DFNRLIRSTAYYLRMKKILALPKNEKPKRLFITVHDMTDARNAWYRKVQSEVFGDELRSLKQTGYVKNSSRLKTYSPFIH
NGIVRMRGRVQDNSKPFDVNNPVILPDNHPFSMLLIRMYHIVNAHQGLETIVNNIKERHRILKIRSQVKKYTASCIKCRE
LRALPTVPQMGNLPPERTTPFAFPFTNTGIDYFGPLVVKVGRRLEKRWVVLFTCLTSRAIHLEVVPSLDTNSCIMAIRCF
MSIRGLPQCIMTDNGTNFTGADQELKRLVKTLDQPQIEDSMSVRGVQWKFIPPGAPHFGGCWERLVRSVKNALRAMLQER
HPTDLVLRTTLCEVMNTVNNRPLTHVSSDPLDAEPLTPNMLLLGRNDSIQFDHDFDERDLDCRAAYKNAQIYADRFWRKW
LSSYRPELIRSRKWPDNRNYHEYHVGDFVMIVDENLHRGCWPKGVVEKIYKGPDGKIRTVSVKTSKSSFTRPVSKIVLLQ
ANISFPGSENVANTGSN
>BEL-623_AA#LTR/Pao 65-6300 via tfasty with BEL-13_CQ, 3 frameshifts. [Aedes aegypti]
MPMATRSAPGRRPRCLACNGPDTMRMVACCQCETWWHYECVNVDESIAAPDRTFICPQCQRPAPTVPNLQHAASETSHRC
PSNLSGARSAVSSTPSMRARRARLQLEKLEAQKALMDKRIEQARREQLIRHEQEKQMQEAELDQIRLQMEENIIEESFRC
REEELLDQESDRGSISSAQSSVSKVREWQQAQELSAILNDDRTASGFNEVVQTEVALTIGAEGNIIDATAQGMLLNQTSV
EPALGGFIDRTASMLGSIVEIDPNTRNDIPSGVRYSTVRYPPYHQPLTTESHTLQIPKIQSSLTQRPFSSDKATLPAKPS
HIIPPSFSRNQAVTSNSNTVVIPSGGVNPANIGQRVKSVTVNSELSHQHRSPADKPAYESVHSRRSQTGAAYRVDSENRE
RLGPQHSVLPTLPVGSIPDVQRGSERQYSVAATPAQTWGPTPQQLAARHVMSKELPVFSGNPEDWPLFISSYNNTTQACG
YSEAENLARLQRCLKGHALESVRSRLLLPQGVPYVIATLETLYGRPELLIHTLLQKVRGVPAPKHDRLDTLIGFGMAVQN
LCDHLEAGGQEAHLKNPMLLFELVEKLPANMKLDWSLYKQRCGEVSLREFAQYMSTLVRAATDVTLHYGPRPTPPQQRET
RPEKGSRDKNFCAAHSEGPSKLKKPGKDDVMDQSTKHTPACLICHDPKHRVKECTEFSNKSVDERWKVILNFGLCRNCLG
SHGRRPCKIYKRCEVDGCQLKHHPLLHSKQYKQEVKRDHKEDPMPESKAVANHHYAGKTTLFRVIPVTLFGNNQSVSVYA
FLDDGSERTLVEQEIVDKLGVTGEHLPLCLQWTAEVKRTENESQRVALQISGVNGMKHALSDVRTVKKLNLPRQSLHHAK
LAEAYPYLHGLPIQDYEEALPRILIGNDNAHVTSTLKLREGKPGEPIAAKTRLGWTVYGTNLKQSEQQAHSFHICECRNE
DTLHDLVTQFFSVESLGITAIACPESDEVQRANEILKATTKRVGKRSKHPMAVKRLQCLERRMRSDPVIGDNVHRQIQEY
QTKGYIHKATKEELQEADPRRVWYLPLGVVLNPKKPSKVRIFCDAAAKVDGISLNTMLLKGPDLLSSLFGVLCGFREKRV
ALCADVKEMFHQIRIRKDDRHAQRLLWRDDPTQAPEIYLMDVSTFGATCSPCSAQFVKNVNAAEHAKEYPLAAEAIQRKH
YVDDYLDSADSEKEAIHIAEEVRHVHSLGGFHLRNWLSNSKAVLARVGESDSATEKSLQLDRGSSTERVLGLFWRPENDD
FTFSTDLVTHVELPTKRQALSIVMSPFDPLGFLSFFLIHGKILIQKMWRAKIKWDELIPETLRKQWTDWMEHFKHLDKIS
ISRCYFPSHSVKDILSLQLHVFVDASEDAFACVAYLRAEFANEIDVAVVAAKSKVAPLKSLSIPRLELMAAVIGARLQST
IIEGHSLHIDQVVLWSDSKTVLAWIYSDHRNYRQFVACRIGEILSKTRECQWRWIPSKENVADDATKWGKGPCMSPNSRW
FRGPEFLCLSEENWPAGIEAEAHQTDEELRSCLVHREVIVPHRMDWKRFSQWTRLWRATAYVHRYVGNLKRKVKQNELQV
GPLTQTELAAAETTIWRWVQNEVFPDEVATLSGERSEQPVRQAKLEPTSKLRKLSPYMDVNGVIRMESRIAAATFASFDT
RFPIVLPKDHAVTALLIEWYHKKYLHRNGETVVNEVRQRFHIPNLRTVVRKEKKKCVLCKLKLATPAIPRMAPLPAARLK
AFERPFSYVGVDYFGPIAVRVNRSNAKRWIALFTCLTIRAVHLEIVHSLSTESCKMAFRRFIARRGAPVEVYSDRGTNFV
GCSNELEREKKAIDQQLAETFTNANTKWIFNPPAAPHMGGSWERLVRSVKTALAAMYTSRIPTEETLATLVAEAESIVNS
RPLTFIPLEREQQEALTPNHFLLLSSNGVAQTSKTLVDSREACRNQWNLYRAMVDQFWRRWVREYMPDLTRRTKWFEDVP
AIRPGKLVIIVDDQVRNGWIRGRVVQVVKGCDGRIRQAVLQTATGLVRRPIAKLALLDIAESKAAPEKPEQLTGRGDVT
>BEL-630_AA#LTR/Pao 1359-7473 via tfasty with BEL-594_AA, 5 frameshifts. [Aedes aegypti]
MEKNPPTARSLSRRSSSSTARARILLDLKRLEDERILQEKAEEKVSREKEYLAKKYDLMQAQLEEEEEGSLRSRRSMSSI
QLVEQWLQNEPVANSGSGIGCSGIPAGTELRTGTVHKQKPSATTTFAAASTPKSGQQAELTFGLNPSLPLAQGATSEANC
GQPAEPEFHAQDPLDWSLTWDVPVAHQPLPKGQFAVDLQEIQRKFLGVQLCPPKPYTQQVGPSSSSQPASGNHPVASVHG
TSSSQQENIATIPATTGGPQPCQVILDPTVSQHDQSSGLEALTTKQYAPAAVTTVSQLCSDYIIPQNRTNALHPNATFKV
PKLSSLIEHTPFGVTEPYKPPQPLRSDTSTFHPMYKSTPYVRPVTAPSVHFADHPVASSSGLPILPNVRTVPSNPTPVVS
SIAVNSGHTIPIPPSDSTSALVPATEPWISAPTSQQLAARHIVPKELPIFSGDPVEWPLFASCYQNTTQLCGFSNGENLM
RLQRSLKGNALEAVRSLLLEPSSVPLIVTTLQTLYGRPDLIINSLLHKVRATPSPKPDKLETLVSFGLACQNLCGHLRAA
GQQAHFSNPALLQELVNKLPANIKLDWALFKQKCATVDLGTFGDYMAQLVVAASDVASFQPSEETRFQSDKRKGKERLFV
NAHSSGTPPENVGRRQQAGTYESKQNQPKPCPICEKPGHKVRECDAFKKCSLEDRWKRVQELYLCRRCLIAHGKFPCKAS
LCGMDGCEERHHKLLHPGKPEPAKPSKPTKPTETLNIHNQRKMTTLFRIIPVTLFGNGRSVHTFAFLDEGSSSTLIEARV
ARELGVKGEVYPLCLQWTSDIERTEDKSQLIRLEISGRGTSKRHVLKAAHTVEKLCLPNQTLPFDQLSEQFPYLRGLPIE
GYSNATPTVLIGVDNTHLKIPLKIREGKIGQPAATKTRLGWTIYGEIPGETSSIERFHYHLFEERRSPERRALVKEFFSV
ENVGVSVVPLLESSDEVRSRKILEETTVRLPSGRFQTGLLWKYDHIDFPDSKPMAENRLRSLERRLLRKPELFENLKQQI
LEYEEKGYAHKITQDEILNSDPKRVWYLPLGIVVQPKKPGKVRIVWDAAAAVRGQSLNSALLPGPDLLTSLPSVLSRYRQ
RQVAISGDIREMFHQLQIRPEDKQAQRFLFRSDPTKEPDTYVMDVATFGATCSPSSAQFIKNQNARDFEAEYPEAAAAIV
RNHYVDDYLDSLDTIEEAIDLALQVKTVHAKAGFHIRNWMSSSKEVLSRVGDSAENNRKASKPICFDLERVLGMSWFPSS
DEFVFNGYFRDEPTPLFHGDEKITSDLFSEWRRWIKLLGQLDAIRIPRCYFPGYHPESFESLELHIFVDASEEAYVASAF
FRIVDGSQARCALVSSKTKVAPLKPLSVPRLESQAALLGVRLAKSVAENHTLVIVRRFFWSDSTTVLSWLQSDQRKYRQF
VACRVSEILDTTKVDEWHYVPSRLNVADDATKWKDGLQINSNHRWFRGPSFLYDPPRTWPKPKELPGATAEELRPVHVHQ
EKAEQQLVQFCRFSKWERCLRAVAFVHRFIDQLKRKRRDEITKDPRILTREELQRAENTILRLAQFEVFADEIITMEKNQ
LLPPDQRQRLEKTSKLYKLTPFLDERGVVRMDSRISSFSEALYDFKYPVVLPKSHYVTQLIVDSYHRRYNHCNGETAVNE
MRQRFHLSEMRAAFRKSRKICSWCRVYKATPSVPRTAPLPEARVTPYVKPFSFVGLDYFGPLLIIQGRHEVKRWVALFTC
LTIRAIHLELVSSLSTECCKMAIRRFIARRGAPSEIYSDRGTNFVGVSGELREQIRGINSDLASTFTNTITQWRFNPPAS
PHMGGAWERMVRSVKCALAALSAERKPNEETLVTLLVEAESVVNSRPLTYMPLETAEHEALTPNCFLLLSTSGANQPPSQ
LSDGKLALRSSWALYQRLLDQFWVRWVKEYLPTITKRTKWFVESKPVSAGDLVMIVEDRLRNGWIRGRVLDVFPGRDGRC
RSANVQTATGVLRRPVAKLAVLEVADTAREDTDQYGSG
>BEL-628_AA#LTR/Pao 36-5923 via tfasty with BEL18_AG, 1 frameshift. [Aedes aegypti]
MSKKGDGQSKRGTSPSNKDPLPVVSCDICRKPDDSRMVACDSCGQWYHFMCVSVDSSVQDEDWSCKKCSEAGKQLLANTS
TPNNAGTIPKSGTSKPADLNVEEYIQKQLMAMQKKFEKMMKEKDDQRLKELRDQRKQYEQLLKATEQRVQQLEQQHRGIT
SSGSGTAGSLSDKQPKQTLPRGGSTTNSNDLRMMLGGGLPESFGRYQHPDVASGVNNPLQWTLGTGPTASSTSNPLPQIH
VQDVSQGDDALAQELLLLEEKQALERKHLEERSRLLQQRYAIGGSATTGLNPQATVFQPNVSSAFGVPLLSQSQVSARQA
VNKELPPFSGDPEEWPLFIASYEHSTRICGYSEEENMLRLQRSLRGKALEAVRCRLLLPANLPGVLATLKTLFGRPEIIV
HSLVNKIREMPPPKAEKLQSLIDFGVAVQNVCATIAASGLDEYMCNVALLQELTERLPPAIRLNWAYHRQGLNRVTLSEF
GDWLGKLVEAASIVTIPSISAPKTERRGQKGENYINVHSESSSIVDAAAKERPSTPKGCLVCQNECSGLEKCPRFLDMDV
GTRWTIVKEQKLCRKCLRKHFGSCHIKASCGRHGCTFVHNSLLHDDKRYSKPATTEVAKTPAENSSESCNTHSKTARKIL
FRYVPVTIYGKGKQVTTYAFLDDGSSATLMEHSLLKELGLKGRSHPLCLDWTGGHQREENESVMLALKISGANDASEVFE
LPEVHTVRDLSLPKQSVLIPQLETKYCYIEGLPLESYDNVSPRILIGMDNCRLGHALRSIEGGENEPVVSKTRLGWMIYG
PCAIESGTINSNHSSHHSFHICPCVKEDEKDLNTAVKEYFSIESLGISGSPTSLPSKDEERALKILSTETRLVGNRYETG
LLWRFDQVQLPDSKGMALKRLGCLQKRLRREPELAVAMHVKMAEYEEKGYIRRLSTREKAEKHSNDWYLPIFPVTNPNKP
GKLRIVFDAAAKVNGVSLNSFLLTGPDQLVSLLAVLYKFREFRVAVVGDIREMFFQVRMKKQDQRSQMILWNNGKTEDEP
DAYVVAVMTFGAACSPSSAHYVKNRNADRFEKEYPRAVECIKYEHYVDDMLASVETEEEAVKLATEVRTIHSEGGFEIRN
WLSNSSDVVTSLHENSTTEKNMSFSTEMSTEKVLGMWWDTTTDTFTFRLSPKHDQELLSGTRMPTKREVLRTLMAIYDPL
GLIANFLIYLKILLQEIWRSGCGWDDEISGKIADRWSTWIEALPNVRQVRIPRCYRYETSAEPTNNVELHIFCDASENGI
AAVAYLRFEEKQIVECALVGSKTRVAPLKFLSIPRLELQAAVIGARLADCIVKSHRLKITQRVFWTDSRDVVCWLRSDHR
RYSQFVAFRVSELLDTTQVSEWRWLPTKQNVADEGTKWQRPPDFQPSSRWFRGPDFLWDPKKEWPGDSGDQGATIEEIRP
SVLHHTSVLRQQWVNFERFSKWKRLLRSMGYVHRFIATLRKGTKKLVGPLTQDELKLAENTIYRLVQQLAYPDEIQLIRD
KDPGAYPWERVLPKTSPLHKLSPFIDEHGVLRMRGRIDACEWADKAAKNPILLPRNNHVTNLVMADYHAACRHQNHQTAI
NQIRLKYNVPRLRSEFGRVRKSCQRCKIRQARPQPPEMGNLPPARLAAFQRPFSYTGIDYFGPMTVLVGRRAEKRWGVLL
TCMTTRGVHIEVAHSLTTDSCILALRNFIARRGAPLEIISDRGTNFIGASRELCEALKHVNEEELMVEFVSPDTKWTFNP
PAAPHFGGCWERLIQSVKKTLHDFEPPRLPSDEILRTMLLEIEMILNSRPLTDIPLDNDTEPPLTPNHFLLGSANGSKPP
IAFDDKPSVLKRSWTMAQLYADHFWKKWVAEYLPTLTRRTKWFQPAKPIQEGDLVIVVDNSLPRNCWPRGRVVKAVHAKD
GQVRRVTVQTASGLLERPATKVAVLDVGAKGGKPLGQQWRTEG
>ROOA_p2#LTR/Pao 5588-7937 via tfasty with ROO, 2 frameshifts.  [Drosophila fruit fly genus]
MLYVDNQTSVINATEKLVRPTTMEANRNLGKLTQQVNIIAETMKEHFMVYKESIKFLMLSNQVRNWIEQAESLQATAISM
ITDISEGRIHPTLIAPNKMLEEFEKVKQKLGRNQMLPSGNSVIQLPLIYKLMKAQAMLWENLLFIEAKLPIYNNQETDLF
EVIPIPLWTNGTKLIPKLNSTFFAYFFFNTDINAYHLMSEMEINQCRQEDLDKAMALPENNWAWKNADDHSCEISPLKPS
KAHSCEMMEFQGNSFIKEISGSNRCLFRLFRNTTANIRCTNSIKTEQLIRLPNQGIIQLLAGCTAILGDTTIITPQKVIS
TASEMSIIFPSLRIIDDKEKEAWNVVPLKHLIVNNTNELQNLQMRIKTLKNNKVHIDDLIFHTASGHSALGLTTIIIIIL
VIYIRRQRINERRLLAVHSR
>Helitron2_OS_rpa#RC/Helitron multiple exons [Oryza sativa]
SNAILNVALWGERATSFPADEVFVAGQKEPQIVIFVGTLVKGYGNGDVSLSGNSACKWYINADTPEVISLRNSIQATYSP
IEWTDLPPAAPAYSNAEPKTIIQIKDLNPFEFQKHEFLVTVVIKKIDMEYSWWYTACDICRRTARPYGNAYKCQNESCPP
LVGASPRFKLSVVAGDDTADAKFVLFGRLAQCLIGRSVEILLEGNAAGKEAIPKEITNLLEENFTWKVAITENTMSSSNV
SFQVNMIVGNGNSQNPAIPQSPSASQASSMVPSLALSPSVTHELSVGQSTAAFAPSIGFSDPPATPSAGLNSPLVVGAKD
KNDDVECQSKTPVQVLDEEDEDDDNLPLSQMGGHSATKKTTSKSHNK
>Helitron2_hel#RC/Helitron  11 exons [Arabidopsis]
MKKRKDNDENDVHQQQKNQKTKKRTRRLFDETNFPSHNQTLGSKNLVPVSSVFGRVLSDITNVDLTKRSQTPHTPVSLPL
YPANNNGSSSPITPINSLNSTLTGDRVIYNTPNTRENIVNRSNSSEVFNPTFTRAAAKTRKSGNLSNTKSIPSSLRKKTN
VKTTNNYDIVNKTPIRRLSAVKRMARKISNPSVGSPDFLTPNQTTPNVNTLFGVDYSGNVLSDITNISGESIVSTIRLMS
NKKKKVSNEQDRSEEFDDHIFDCSSQEEYESDKDSPSDQVVGPNNMIDMKDLLRRNLNKEFAAAASNKEDGSSSTSGYHD
EGDANHTCVHCGAIFWYGERLNRRRKSANPVYTGCCMQGQIVLPMLKESPEYMWWLLTSDHPDAKNFRANIRPYNMLFSF
TSIGGKVDRSVKKGRGPSMFALQGENYHLIGALKPKPGDYAKFQQLYIMDTDNEVDNRIEVMSKGNNGGMEGGKQKFKKE
TVSALLKMLDKINPHVANFRIARDRFNIEKEEANFHMRIISKRETDGRVYNLPSVAEVAALIPGDFDDNLDKRDIVLQMK
SGKLRRIHECHVSYLALQYPLLFPKGEDGYRLGIKKTPTKTSKGKKKQEDVSMRQWFDYRLQERKDEKHILLRSKRLLQQ
FMVDAFTMIESNRLRYIKKNQTKLRSTNKQAVQDASDAGDNDLSNKGKSCIIPPSFTGGPAYMQQNYLDAMGTCKHFGFP
DLFITFTCNPKWPEITRFVKERKLNAEDRPDIICRIYKMKLDNLMDDLTKNHIFGKTKSAMYTVEFQKRGLPHAHIIVWM
DPRYKFPTADHVDKIIFAEIPDKEKDPELYQAVSECMIHGPCGLVNPNSPCMENGKCSKYYPKNHVENTSLDNEGYPIYR
RRDTGRFIEKNKYQCDNRYVVPYNDVLLRKYRAHINVEWCNQSVSVKYLFKYVNKGPDRVTVSVEPHRKEVVSEQNNVGE
TNNDPQERNQVQDYFDCRYVSACEAMWRIRGYPIHYRQTSVTKLTFHEKGKQPVYVKEGETAESVLYRVNNDETQFTAWF
ELNKRDPEAAKLLYEQIPNFYTWNGKDKDFRRRKMPGFVVGRINHVPPKIDDAYHLRILINNIRGPKGFDDIKTVEGVVH
KTYRDACYALGLLDDDKEYIHGIEEANFWCSPKYVRKLFVIMLISESLSSPAVVWEHTWKILSEDFQRKVRDKLKRPEYI
LPDEDRIQLCLQELQKILKRHGTDLWRYKMLPQLEPGDEPAFNQLILDERNYNRESLKKKHDNWLKMLTPEQKKVYDEIM
DVVLNDKGGVFFLYGFGGTWKTFLWKVLSAAIRCKGDICLNVASSGIASLLLEGGRTAHSRFGIPLTPHETSTCNMERGS
DLAELVTAAKLIIWDEAPMMSKYCFESLDKSLKDILSTPEDMPFGGKVILFGGDFRQILPVIPAAGRELIVKSSLNSSYL
WQHCKVLKLTKNMRLLQDIDINEAREIEEFSKWILAVGEGKLNEPNDGVTQIQIPDDILIPEGDNPIESIIKAVYGTTFA
QERDPKFFQDRAILCPTNDDVNSINDHMLSKLTGEERIYRSSDSIDPSDTRADKNPVYTPDFLNKIKISGLPNHLLRLKV
GCPVMLLRNLDPHGGLMNGTRLQIVRLGDKLVQGRILTGTRVGKLVIIPRMPLTPSDRRLPFKMKRRQFPLSVAFAMTIN
KSQGQSLGNVGIYLPKPVFSHGQLYVAMSRVKSKAGLKVLITDSKGKQKNETTNVVFKEIFQNL
>Helitron2_rpa#RC/Helitron multiple exons [Arabidopsis]
MMLANPLPFTPLKSLKPYKNAWRIQVKLLHVWRQYSVKAGESIEMILVDEAGDKMYAAVRREQIKKFERCLTEGVWKIIT
TITLNPTSGQYRISDLKYKIGFVFKTTVSPCDTVSDALFLSLAKFDVILSGSANSNILHDVMGQVVDRSEIQDLNANNKP
TKKIDFHLRDQHDTRLACTLWGKYAEIVDQACQESTDGIVVCLIRFAKINLYNDSRSVSNSFDVSQVFVDPTLAELGLFK
QSIPTDGLTLGSSGSFHKRLYAPRTGDDDGDYPRQTIKEVLTSSDVGKCKTVCTVSAIDTDWPWYYFCCRAHNKKVVKEE
VIKLEDVKLPQKPRFWCEICNGFAKSVVAKFWLHLHIMDQTGEARCMLFDSHAKEILGTTAHELLDGSFDEIEDPTVLPD
VINGLKGKTFQFLLCIQRENIFGGYDSFTVARVYTGNIADEIVQEDSDAYVDPSSLISIEQGSLMLTNGVDLSDVDLSST
STPSSKRKDSDDVDGNDQASTSRKKCSKMTMSEEGSGE
>Helitron3_rpa2#RC/Helitron ATRPA3H2p multiple exons [Arabidopsis]
MGTIDYIRDFNLERTNWVLYVKILSLWNHLAVNNGEPTTMILCDENRCRIDARVPSRNYLYNFRSTLREGTWYYMADLLL
KRATSTTKYSSFIYEIKFIWPTTMWRVSPRSTQISLQVIHSDEVEYEPDTYVNDKLNVVGIISSVSTFARFPYVYREGET
DYEARYVKFTIRDNLNRITTCVAKGRACELFLIKFYRRIGLVTYNFEPIVAVVRFWRVHDFKGSNALFSEDGCSKLLIDP
LFPDYDLQTYIGWNAYGDDEVVDGKIDYVIEN
>Helitron3_OS_rpa#RC/Helitron OSRPA1H3p multiple exons [Oryza sativa]
MAYSMLSKLELCADNPRICVRVSRLWEFANPNDETQLLHLGLVLIDQEGTSIAAQIYPPCDLQFREIITEGKVYYLEYYR
VREWSRRYRPVNNSLSICFTRWTKVEQVADPAADFPLYTYSLTPYGGLRQRVDRKEEFTGDISLSGNSACKWYINVNTPE
VNSFKESIQGKYEPIKMIELPAVGAVRTGAEQKSIAQIKDLNPFMFRKNEFMVTVVIKKIDTESSWWYPACDSCKRTAKP
YGKSYRCGNTSCPAVVSASPRFKLSLIAGDDTGDTKFVLFGRTAQRIIGRPVEMLIQNNPAGIEFIPKEITDLLEKEFTW
NVAFTENTLSSSTVSFQVNLIVRGPDNPCSSALQSPSASQASSAVPSQALSPGLSHGLSIGQCSAAADPSIGFADPIAGI
DSPLAASIKHKKPETEYQSK
>Helitron2_AG_5317-5994#RC/Helitron [Anopheles genus]
QTLIDCIFPDLKTQYVHQSWLAERAILAAKNVDVEELNFQIQDALPGDLVSYKSFDTVCDSHEAVNYPTELLNSLNLPGM
APHVLRLKVGSPVILLRNLNPPRLGNGTRLVIKKLKKNIIEATILNGKFVNENVLLPRIPMFSTDSTIEFKRVQFPINLA
FAMTINKSRGQTMSVCGLDLRTSCFSHGQLYVACSRVGKPSNLYILAKDRLTKNIVHSLALRDLH
>TcViper_pol#LTR/Viper 1386-4214 [Trypanosoma cruzi]
MPTVPYLWTRGIYMQRAPQRELLTIQAPIKKRQRGCRTPLMNAGDGSPTTSHQSSQAAHRTADAPPDLSNCPTQSSGRAM
ELIRKRRSTVVRRITDIPALGQLYEESERGRSRDVGAVNVGAENVPSGAIHDLLPHARTADERGELCGLFDGNRXGAIDP
TAVRQDAAVHVGNESNPAGHGDSGVTKNCGAIGDEASAPLDKGRDESSNPQPDRLEGTCCLTTCVDNGESLVRDCGLDXQ
KFHTGGGRDLNFGLVRGAEDGEGGSPPRLAVREDTRAGRVRHYKAMQDTSRKRKAHEYYXCPSRTSSGSLECHGAFHKTR
CVEARCSNRGGVQFGSTRDLAVGEARRPVRPSPEYCSIFGEVHHNADPGVVAGRIDVKGETAEGQEPWLRAEERFFHDFN
HNHAATITRRATRTRLATPQDEHAIPLQQVNVPVLNLEWIKSRLNPATLERLMQVWGLVGRSPFPPSSSGKAREGSRRIP
TADARLLRKAGIIEDASSTITGGWIIPFSVVEEKTTGLRRRWIAWPRDKNRDDPYEANVPLLHISHYLPPVMAEAASCLD
LKASFFQVSLPRETRHLFRCRVEDGTLVELTRLPMGYKASPEILQIITSAIAGVTTVVHPLWAAPPLVRVDVWIDNIRIA
GSKSDATLWEAQVLRNADSRHATMGEDRESGATQYTFLGVQFDHTHRAVSLSDKFVRSVRAMPALNSLTIAEMEVMASRF
LYAAAILGTRLCDHYFFIKAVRRRLSALNRGIVLETSPANLPPXAVGLGERLRHIIENNRKRIIKPTEKASAAIITDASL
HGWGAVFIPDSGDVKIAGGKWERKPFLIMQAEARAVRLALSAFSAILPSTMDVWVDNTSLQGAANKGSSKSHAMTWELQR
IYEFLDSRGIQATFAYVRSAENPADGISRGRVFTLQDLAKGWNLRRGAAGSCGWRTPKSATS
>SACI-12#LTR/Pao 240-5282 [Schistosoma mansoni]
MPNNRAKKSIPKLIGEGEDKVNDKSLSTKQVFSDVFTPHGSNVFKESYSDSDSDVMLDKVADLSLDKGERLRHAVSGTTP
KVPIVGLELPKVELCYFDGKPKGYWKFIKQYDTYVAARVSDDSQRLLYLLHYCKGKAKAAIEGCVMMEATSGYKRARDIL
KRLFGQAHVIARETLEDLFNDVRRGCHDAEQLSSLAIKMENCSMILEQMNYTADLNSLVTLERVVRFLPQPMQRQWAEVV
DSLTEEDREPTFAELTQFVAAKARVAASRFGQLAERPRGGVTTKSCYHSVVRPKNTPIASAKCSMCSGDHAVYECSQFLA
LTTEERLSHVKGKSICFVCLKQGHKAIECKVTRRCAIDGCSGRHHSLLHKGSAKSKSEDRLATVNHCGHDRPVDGHVCLG
MIPVRLRSGNAEVVGYALLDNGSDVTLIRSGCLKLLGLNEEQSSVVVQTVSGNKATRVIKTPFEVYSLDQTEHVKIQGAL
VVSQIPGHKPTKTIMSSLVKWPHLSDVPLEVIDSGEVVLLIGCDVPEAHWVLDQRLGGRKNPYAVKTLLGWTVFGPTSFS
GLKKKVSNCMSKLQTLEDQFRKLYDVEFADVYSSDKSPSVEDRAAIEIVERGTFYDGGRFVVPIPWKMYPNKKTGNYEVA
ASRLLSLKRRLLKDSNLYTKYAKSIESNLAKGYAQRVPEIQLRSDYLPRWYLPHHAVINPKKPEKLRVVLDCAAKFAGVS
LNDMIYQGPDTTAELVCILLRFRKEAIAICADVEEMFMQVKVPESDQGALRFLWWQETDMSKEPSEFQMTVHPFGATSSP
FCANFALIKTAQTFSDGFDSYIVEAVKNNFYVDDCLVSFSTSNQAKNFVKQVSELLCKGGFALKKWITNSVEVRSVLHGV
CKEGPVMEMSRDCDVIHRTLGVQWDCERDVFQFHFDAPERPLTRRGILSVASSLFDPLGLISPVCLTVKLLLQELCKSQI
GWDQPINEPYTSIWLNWVNFMRQISHVKIPRGIKNKLDEPNARVELHLFSDASEIGYGAVAYARVSYLNEPPYCILLYSK
SRVAPIKPVTVPRLEMAAAVLSVRLSEVLQRSLPNFFCEVNFHTDSMIVLYYIRNTGNRYSTYIANRLAILHQHTKVEQW
TYVKSSENPADWTSRGIQKLADLESWIKCPTLQQAEFGKTITDCPQTIPDSIEFRKTAVVNLSKLNYDKFPIISYYSDWL
RLVRAVAWLRRFIEYWMILHSSSLEGSVHLGCLKFEELESAKRKVLMIVQKEVYGRLLSEFKNNSNVNSQNDLKRLSPVM
RDGLLCVGGRLNYSDYPDDFKYPVILPSRHLVTEMIVRHYHKEEGHSGTSQVLAAIRKYYWIVKGTSTVRRVIGKCVICR
RYTTNSGQQLMAPLPACRVKPGWHSFSIVGVDYFGPILVKRGRSLEKRYGCIFTCLQTRAVHIELAYSLNTDSFVMALLR
FIGRRGKPSEIYSDNGSNFVGAISELRKYVRQWDQQRISNELSAKQIQWHFNPPSSSHRGGVWERMIRSVRRLLLLITRE
QTLNDETLGTYLVEIERILNDRPLTPIVQDANDKLALTPNSLLLLRECDSIVDESSIRVNYDKRWKQVNYLANVFWKRWL
REYIPSLQARQKWLVERRNFQPGDVVIVVSDIFTRGKWPLGVIESCETDKDGKVRTVSVRTNNGSIRRDIRKVCLLEGSN
>Helitron1_CE_hel#RC/Helitron spliced mRNA [Caenorhabditis elegans]
MDNELTSRPDSIMDTEPTTLPDSAMDTKPTNLPDFPSTSQEPVSRRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMD
WERKKEKRASMSEEEKAEMKYKKRVWMKKKRNEVAKTHDTSSVANPNYLGSMRCVCKNCNARFFQGEVSSSNDHINMCCY
FGLTTTLQDRFSNYPDELRHLLLDDSSHARNFQKNIRQFNSSFAMASMGAQLDVPRGRGPYCFKIHGQVYHFAGPLHPDP
GQRPAFGQIYILDTDQATDERLGNPANADCDPAVMAELSSLLLRTNPYAQAYKMMAEVEEKENSEAAKEGRHPGCVRLIF
DISTTKDPRRYNLPQANEVAVVFVGEDDDVPTTRSLAVHPRGGGLKTIRDIDRICDPLTYPVLFPNGTDGWHPDLEKRPS
EKKQGRITQKMYYSYLLMERSGVFNPLHHGRALFQQFAVDSWVKIEQNRLNYHRTHQVDLKAANYNAVQDYIAGDTDVPG
RRIVLPSSFPGSPRAMVQNFQDAMAIVSKFGKPDIFLTFTCNPAWTEISENLGPRQSASDRPDLIARVFKLKVDALFDDL
LNRDILGHVAAYISVFEWQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPCGAQNPH
SPCMVDGHCSKRYPKDFHPSTTLNVDGYPGYRRRDDGRYVEYGTQHLDNRRVVPYNKWLLLRYNAHMNVEICGFIEAVKY
LFKYVYKGHDRAALNIIQNVRGDGNVVDEIREHLDARYVCAPEAIHHILGFKLEKKASVTTQQLESSSQTDTTLTAWFKI
NQKSKDIAESGNIPSTFVDSRQFFYMDMPTHFTFVKKDGWKVRGRGTRQIGRMYTVPPYETERYALRILLLNIKGATSFE
DLRTVLDENNVPVVYATYVEAAKAQGLLNDDSEYLKSLKEWAGCSVPAALRSMFVAIILFNEVHDLNALWDAVKWDLSED
FRHAGAGKEEAEALAYFDIESRLQRVGKRFDVTKPSINPPPIDLDTVNPAQCASEGNRLLATLNDQQKRAADQILAALDD
ASLPRLFYLDGPGGSGKTYLYITLYNICVGRGLKVACTAWTGIAANLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQE
LAENDVFIWDEASMVPKTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLWTEFQIL
HLISNMRVTSGDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVIDPTTSDPCDNVILTPKNVDVAQLND
DVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLA
SHSLGCRFATGERKGHFTIIPRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALS
RVRTKEGLIVKSSSNIVTNIVFNEVL
>Helitron2_AG_3797-4363#RC/Helitron [Anopheles genus]
TVSGCCSFSRPSRKRSTRFFSEENAIERATNPPRTTLTAFFELCNRTDVLGAFARTLHYSEVPRFFTWHQTKQWMPRKQG
IPVDACPGLFKSNTLGRVYTINPKQIECFYLRLLLINVIGPLSFENIRTVNGQQHSTYKDACLALGLLENENHWHDMMAE
ATLDCTATQIRLLFAKVLYELYFYIRII
>Helitron1_rpa1#RC/Helitron ATRPA1H1p; multiple exons [Arabidopsis]
MAATFAYLKDVRPYKNAWRVQVKILHSWKQYTSNTRETIELVISDEYGKKMHATVKKELVSKFVHKLIVGEWVFIEIFGL
TYASGQFRPTNHLYKMAFQVRTEVMGCASVSDSNFLTLAPFSKIQSGELNPHMLVDAIGQIITVGELEELEANNKPTTKI
DFEIRDQMDERMQVTLWGTYAQQVYRACQESEGKNVIFLIRFAKIKSYKGIFSFFVPIPFLSILHDLWSLKCYETAGVKS
LSNSFDASQVHVNPDFPEAHHFSQTLPNDGAICVFRARVPRFEMVAVKRIDYSEYTRNTIEDLLSSTEVGKVRVLCTIYA
IDTDWAWYYISCKTCNKKVNHIHAGVNGVNNKGKKPRFWCDTCKSVVTNVVSRYMIYAKVMDSTGEAKLLLFDSICSEII
GESATSVLNGSVDEIEDPEDLPDSVKNLIGKTFLFLVWVEKDNISDGKEIYKVSKVLLKDGLLEEQLLEDSAEHVNPASI
VSGDQVLLMLENGNGSPDSTTPSSKRVYARETSGSEGSSSSKKVCVVPLDLEKSLSENAEHGVALNPQVADSKEVTVPTE
VKTSKVPVETENDQALVPATVVVKQEVKKEMARNMATNWVICVKVLCIWDHPPNVNGDVTTMILVDAKHHRIVATIPRLN
LREKFRRVLQEGFWFNISQFRVIPSTHRVETWDTVVFRMSELVKSDFTDYLFPNELEDSATDNVVDVTDAIGVVASVSSI
KRFPYVCNKGETDYEARYVSFELMDNWEQKLKCVAVGSCCEEFVTKWSRRITRPTYNYEPVVCVVRFWRIASIDGENVLT
SEFGCSRLHIDPSFPYFDLASYLRSFKDADDQEVTMEPVTEA
>BEL-19_CQ#LTR/Pao 664-5844 via tfasty with BEL15_AG, 2 frameshifts and 1 stopcodon. [Culex quinquefasciatus]
MDENAQIAFFKKKQLIALEGSIKSMANDVGNVEKAPKTKPEIKVVTSMLDQLYDQACNAISKLEGFTEPLLERRNGIMLV
YSGARVALEDALGQFEPLARATAPLMEQTFQQQPGRADHLPRLELPTYNGNPIEWLAFKGRFEKRIANITEDSDKYAFLM
KCLEGFSTARNKIDALENSGAKFQDVIRFKRITTPNPKAIMNLMDVVDTAIHAAKQIHADANPALDCVADGLLVALVKSK
LDPETSSRIEDAMDIHTVYGWDAFREELEKRTSQMVSLENEKEKHAKTVGAITANDSENKRPKKPKNPKDNACFVCGEKH
AIRYCANFKKMALTKRVDTVKAAHRCFSCLNRGHSFQNCPSQKSCLECGLKHHTLLHKNAEGENTAATLPAIMPSTSAQS
PQxLEREYVFLATAEIHILGASNWYVIRCLLDSGSQAEAITEEAASALGIPIMHSNMQIKGIGGSLNITGKIDTVIASGY
GNFRLPITLIVVPKMLDDQPSISIEAKDISIPKHMELADPTFYHKRSVEIILGARVLFQILGPRRMRCATGPNLQESALG
WLVGGLVNLGKPRTSSNGCCLNISTSKFWALEEVTSAEAKSPLNSNNRCEDFFVQTTTIREDGKYVVRLPFKEEPVLLGD
SFEQAKKRLLSLERKLARNPTVYDQYRAFLKEYLELDHMEMVEQKDICKVRYFIPHSCVIKPDSTSTKLRVVFDASAKTT
NGRSLNDAMLSGPPIQSDQFDLLLDFRCHDKVLMGDIAKMYRQVVVHEVDSWFQTILWRNTPEEPIQVYRLKTVTYGEAA
SSFLACRALHQVGEELRTELPEIAAMIQRRFYVDNLMMGGDSAEELLDRRRAVEAALMKRGFPLRKWAANDLSIIADIPN
HDRETEIRIGDHEIIKTLGVAWSPREDTFKFLVEEQQAIRTSMTKRQLASEVLRLYDPLGVMQPIIITAKILLQGLWKTK
LGWEDHIPDETLHEWQNLKKSLPKLAELKFPRRAMPSNPVRLELHGFSDASSRAYGAAIYAFAVDAQGNKSFNLLCSKSR
VVPIKELSLPRKELLGAKLLAELMYRALGIVPHTVDKVHYWCDSQVVLAWIHSNVPHHEVYVRNRINIIQNLSEKTNWKY
IPTDLNPADIISRGISVRKLLNVKRQLWLHATTYVLENHGEVQIAAVQQMAADPPRPEINDLIASYKYCNFYRYTRRHFA
WLYRAKRNLMARSNLLKSRGICVQVKTGPLDVEDLEAGMCLIVKTMQSICIPEEVKSIELTGQPTSQGPLQHLFPFIEDG
VVRVSGRLDLADLPADQKRPIFLPREHPFIKIILIHIHRSNNHAGLEIVLAQFQAKYYMRGLRKTAQTILRKCVLCARAR
PRRFEQQMGQLPRPRVNPSAPFTHTGIDLCGPFEVLPSKRAKVKLTMYACIFVCFSTKAVHLEIVENQSTSAFIASLMRF
VSLRGRPEVIYSDNGRNFVGASRELDALRKVYNDEAFQQELIGSIAEEGIRFSFIPPRSPNFGGLWESNIKVAKRLFSAA
ARGASFNVLELQTVFYQVAAIMNSRPLTSVLSNAGAPEPLTPGHFLIGRAMNALPIPGSHLEERNLSMRWKRIQAQTHQF
WHKWQNEYLQHLRCLAKWTKKQPNLQPGQIVLIGDDNNPVAKWPMGIVVETQAGSDGVVRVATIRVGANLYKRNVRLLAP
LPIEMSSIEDYIEPCNEASRLEHENNVPSSVGPDKIWADRLRPKGGR
>BEL-18_CQ#LTR/Pao 1167-8325 via tfasty with BEL14_AG, 2 frameshifts, after deletion of an apparent insertion between 2722 and 4589 [Culex quinquefasciatus]
MVATTTRRTTTGTTAAAASTGSTATATGLVAAATGLASTTTGLAAAATELAAATTRLASATTGLASASTGLAATRTAAHG
TDASGLDSPPCPTPQQLLARQIMPKDLPKFHGNPEEWPLFFTAFTNSTNACGYSNVENMARLQQAVQGRALEQVRGRLLY
PTLVPQVMSTLYMLYGRPELIIQTLLDKVRDCPSPKAEKLETLITFGMTVQNLCDHIIAAGHVAHLCNPVLLRELVEKLP
AQQRLNWALYKQQFPATDLSTFAAYMAKLVEAASEVTVITDSKQPRSGRTERGVERSYVNVHSTSDSPTRDEHPKRSTEX
KETVDIKCLACNATNHKVKNCETFQKWELNLRWKLVQDNHLCRTCLGKHGRRPCNLRTRCGMDGCQERHHELLHRETPKD
QTPSQEGHNRAGETKIAGDGFNAHHATKKSTLFRILPVTLXGSVNTYAFLDDGSDLTLVEQSIAGQLGIDDGVPTPLCLS
WTSNVTRQEPKSQRVRLEISGEGKKERFTQGASLDLPKQTMRFPDLARKFTYLRGLPVRSYEAATPGILIGSNNAGLIAT
LNLREGELGDPLASKTRLGWTIYGSSSDGQRTTNFTLHVCNYQEDQHADQELHDLVKRHFTVESIGVSADKGPESEEDKR
ARLILMETTKRVADGFETGLLWRHDETRFPDSFPMAMRRLECFERRMKNDPELQASVQQQIKEYLESSYIHEVTPEEIES
ANPHKIWYLPLGAVRNPKKPGKIRLIWDASAKVGNVSLNAMLLKGPDLLTPLASVLCGFRERPVAVCGDLRQMFHQFRIR
SEDVHSQRFLYREHFTEPVKVFAMDVGSFGATCSPCQAQYIKNLNAREHEKEFPEAAKAVINKHYVDDYLDSFDTEAEAI
KVALDVKELHSRGGFEIRNWHSNSEALLARVGEPKKVSTRAISIDSESEAERVLGLLWLPEEDLLAFATELQLDGIPPTK
RNILRCVMSLFDSQGLLSHITIQGRMIIQDTWRGKTNWDDEVIETIRVRWLRWTQLFKKVGGIRLNRAYFPGFSAAEIGA
VELHIFTDASEEAYACTAYFRVVINGKVYVTLAMAKAKVAPLKALSVPRLELMGALLGARLAKAVMEYHSFPICRRVFWT
DSKTTLAWIQSEHRRYRQFVAFRVGEILSKTDVIEWRYVPTLLNPADEATKWGKGPSTDVNSRWFSGPEFLYLPETEWPA
QVSTELDTDEELRPCMVHREHQTEDVYEINRFSRWELLQRTAAYVHRFIGNCRRKMQNQPLAAGCLKGEELRTAERSLWR
TVQLSEYPDEVIALKQGGARPKKTIEKTSPLYKLTPYLDEHGVMRVDSRIGAVPYVNFDFKYPIILPRRHYLTKLIVDWY
HRRYLHANHSTVHNEVRQRFHVSSLYTVVLQVAKDCQTCKNNKAVPTTPRMAPLPYSRLAAGVRPFSYVGLDYFGPIHVR
VGRSSVKRWVALFTCLTVRAVHLEVVHTLSTESCKMAVRRFVARRGSPVEIHSDNGTNFQGASRELKDEIEVIGKNLAET
FTNSNTKWLFIPPSAPHFGGSWERLVKSVKVALRSLCSDRKPDDETLLTVLAEAGSIVNSRPLTKIPLEDASQEALTPNH
FLLLSSNGVIQPPSSLTQPPKVTRTNWNLAKQLVDQFWRRWISEYLPIISKRTRWFSETEALKVDDLVLIVNEGQRNGWT
RGRVLTVIPGRDGRIRQATVQTAAGILKRPVAKLAVLNVQDSCNATVPAEPERRYGSG
>BEL-21_CQ#LTR/Pao 752-6119 via tfasty with BEL-642_AA, 2 frameshifts. [Culex quinquefasciatus]
MLFSWRSVVTMGDLQTLRKKQEILLNKLEVLNQFVEHYKAEEHECQLEVRLGMLNDVYQEFTDLRTKLELLLEEKDAAKF
ANAEPKVKQEVVSHREEANLQVVQEFDNKFCKIKAMLIAKRPVKDVAQTVPSVGDADTSFPLRVKLPDIHLPNFSGNLRE
WVTFRDTFKSLIHRNSKLTSMDKFTYLQSSLSGPALLEISGIDLSEENYSVAWSALEEEYGNKKLIVKAHLDVILDLEPL
TKESYDGLSHLLGEFEKNLQMLDKMGEKTADWSTVMAHVLCSKLDSATLRNWETHHNSKEVPTYKALLVYLRGHCSVLQS
IKRAKAKSSEQRPPKAAVCHTAVRSSNQCHFCSGPWHTPFRCFKFQKMTISERNDAVSRNKLCRNCLKPGHYPRTCEGGT
CHHCHQKHHSMLHNDQMRSSVPQQQSRPTATTSVQRQQPRPQNTNQTTHTPANNAPANQTNLQTTDSQTTQPQTTSQNYV
ALPVTPTHNIILSTALIRIKDRFGNTLLARALLDSCSQHCLMTREFSRRLKFERQSSYLPIQGIGTSRCVSTQLVRADVG
PRSDRISAYESEMQFYVLPKLNISLPTSYIDPSTIQLPDWMFLADPEFHKTGPVDVIIGAEFYMDLLTDERVKPAADGPT
LHNTVFGWIISGRLPGSVPESTSLVSVAAIDELLTRFWELETCRTKSTHSIEESTCEQLFEETTVRDETGRFVVTLPKKK
YAVQRLGESRSTAIKRFLGLEKRLSANPDLKQQYSDFIHEYEAMGHMKRVAGDTAGGELAYYLPHHCVLRLDSTTTKLRV
VFDASCRMSTGVALNDALMVGPVVQDDLLDIALRFRLHAVAIVADIAKMYRMIRVQPDDQRLQRIVWRDNVDEPIRIYEL
TTVTYGTASAPYLATKCLQKLGEIGEKTHPSAAKVLKRDFYVDDMLAGAHTVAEGKELVAEMVDLMESGGFSLRKWHSNS
RDILLDVPEHLRDERTLLKLDTSDATVKTLGLVWEPSTDCFRFRSPKWNDVAVITKRVVASDMAMIFDPYGLIGPVFVQA
KIFVQKLWRMELDWDAALPEDLQEYWREYRRNLAGLDSLSIPRWIGTGADDQNVQLHGFCDASVNAYGACIYIRTVSANG
DVTVRLLASKSRIAPLENLKKKKRKQSIPRLELASALLLAHLYEKVANAINFRGKAFFWTDSMIVRCWLASLPSRWNQFV
ANRVSEIQHLTESGSWDHVPGIENPADIISRGMTPMQLQYSKLWFNGPDWLSLDHQHWPHAQVPNAADFDHEELEEHNAV
AAVARDTEPCKLFTANSSYTVTIRTTAVICRFCFNSRAANKHCRRVGPLTAEELEVALKKLVRLAQRECFPEEYDALSRD
RAIPSNSRIAALNPRIVDGILCVGGRLQHAAVSDNRKHPYILDHRHPFTKLIVTHYHETMFHAGQQLLISAVRERFWPIN
IRNLVREVIHKCVDCFRVKPKVLDQLMADLPARTTPCTPFARVGVDYCGPFQVAYPQRRARPVKCFVAIFVCLVTKAVHL
ELAADLTTQHSAPSNGSLPGVQTKLVMCDNAKNFVGARRELSELAKLFSSQQFEEEIIRETANDSIEFKFIPARSPNFGG
LWESAVKSFKLLFKRTIGLHTLLYDEFQTVLVQIEAILNSRPLTPLSNDPADFEALTPGHFLIQRPFTAIPEPNLDHIPE
NRLSAWQTVQRYTQQLWKKWSNLYLSDLHNRTKWTKQKDNVAVGTMVLLKDENLPPLKWQLGRVSDIHPGADGNIRVVTV
RTKDGSYQRAISKICILPIRDNLFTAQGEN
>BEL-22_DTa#LTR/Pao 1808-7018 [Drosophila takahashii]
MSRESSNKLSPVPSPKVPKITVRTPTPTKVKTPIPKRAPSPIERSTRASTKMVATAAELALNQFIEVSDRLSELESRINI
PAAVPPTLSVLNIRRDEIKEVWVRIKKEYDACTACLVAAGESAADSLPVLKAKYGYCYSAYERCGAQIADQIAQTPQNPQ
ATSTPDTPQTYIPSGCHLPPCDTEVFTGDYLRWPTFRDLFTAIYINNPRLTPVEKLFHLNAKTRGDAHNIVANSPLTNDG
FRSAWDNLTERFENKRLLVNSQLKILFNVPSVTQESGSALKELQSTIQGCLTALEMSGIQVETWDCLLVYMCSSKLPKLT
LSLWEQSLHNKAEIPTWHELNVFLTERHRTLEAIDDVRPSGSSQTQPRASTSNSASRRINSYETRVTPRQPRGCDLCNRE
NHPIRTCAQFLRMTVDQRIAYIKRKQLCLNCFARTHQLRDCESAHNCFTCRGRHHTLLHRGTPSPARANPTPTPRSRPNT
PGPSAASGTQPTLQNYFAAGSRSVLLGTAMINICHQGSNYQARALIDSGSEATFITERLFNLIKLPFQVIQAQVSGLNQT
VSAETKKLCQFTIRSPTRPSLQLNTTAYVLPQIAGNLPSCPLPQHFLRDLPELPLADPKFYESAQIDLLIGADILXSILL
SGTRANICGSLLGQETIFGWILTGPVPAPRQDRISSFSTHVAHTYEASLDKLLTKFWEVEDLPVKVAKESDVICEDNFLR
TTTKDDTGRYVVSLPFRDPENMKCSLGHSRSLALAQFLRNEQRLKRDSTLKSKYDSVIQEYLDLNHMREVPPTHDSACYY
LPHHAVLKPESTTTKLRVVFNASSPSDNGVSLNDILHAGPVLQSDLTIQILKWRYFRFVYSADIEKMYRQIWVDPKQTAF
QRILFRNREGYIRDFELKTVTFGVNCAPFLAIRVLQQLATDVQLTHPRASKVIRGCMYVDDVLSGADSAEEAHLTIRELQ
SALDSAGFPLRKWTSNHKEVLAHIETDHLLNADFLEIDTESTAKTLGVRWKATSDEFFFAPPDLSNEATLTKRHVLSQIA
KLFDPAGWLAPFVVCAKIFMQEIWLHDLGWDDELPIELCQKWRDFLQSYSVLDQVRIPRLELCGALLLSEMAESILPHMP
VLSSKLHCWTDSTIVLAWLAKPACQWTTFVANRVTKITQSTEAANWAHVQSEHNPADLASRGVPLQELVDNSLWWHGPTW
LSKPRDQWPSQSTDLQVTEVERRPVKAHVASIPTEDILDRFSKLDRALRVLAYVHRFVQRCKKQSQMSEVRLEAQELVAA
ERLMVISTQRRYFSNEYRCLSQKRPVSATSSILSLNPFLDQKGLIRACGRITASENLRYDERHPIILPYECALSRLLVNF
THLITLHGGNQLVVRLTRSRYWIPRIKNLVKAVINSCKVCVIHKKRLQIQMMGSFPKERVSFSRPFTYTGMDYAGPFDIK
NYTGRACLITKGYVLVFVCFSTKAIHLEPTSDLTTEKFLAAFARFVSRRGCPRQVQSDNGKTFVGAATLLSRDFLQAVKE
SVTDAYSHQQLNWQFIPPGAPHMGGLWEAGVKSFKTLFYKSTATRKYTFEELSTLLAKIEACLNSRPLSPMSEDPTDLLA
LTPGHFLVGGPLLSIVEPELKGESKSIVNRWQHLKALHQQFQARWKEEYLKELHKRNKWQAPTANLRVGDMVVVKEDNLP
SNEWRLGRIDSVFPGADGNVRVVSILTARRIIKRPVTKVVLLPGEHSNRLPQPTSSA
>BEL-21_DTa#LTR/Pao 1007-8032  [Drosophila takahashii]
MLSEKTIELLQKQSDLTKQIRALEAKVHLSLPEFQKSLDLQKIFIANHSALVKIGLVDHEYFTLKHYDAMMMVLEKLKIQ
FERDSGKAAGSSDQRVAEVGEVKHMARAAMLKEDFNANAGLLRNYLDDTFNNLNSDLVSLEVRKNKIQFWKAKTFGLIEE
VRSCFESREFERLVSELEFDVNNIIDAIDKKLSKETNLVRESITVKEEELPKLPKIKIPTFFGDSKEWDLFNELFMELIH
TRENLTTAVKFSYLKSALKGEAKNVVSHLLLGTGDNYEAAWELLTKRYENRRKIFSEHINRLMDLPNLNLESNKQIKTFI
DTINESIYIIKLKAQLSEDVDAVFAHIILRKFNKDSLNLYESHVKKTKEIQALSDVMEFLEQRLNSISSFPQENKPMRKE
FQSKSSKENCAYCNLPTHNITQCYXFKGMEPAERNDWVKKRHICLKCLRHSSNKKCTNEILCLNCKKPHHTLLHINNNRE
KVNTCRTTEQALLATALIHVKSASGGYEKLRALIDSGSQSTIISEEASQILKLPKIKNYTEISGVSSIKKCVSKHKIKLN
IKPLKEKKNELVVEAIVLPKLMKALPMRSLNIDKTRWQNYPLADPEFNKPGRVDLIIGADLYAKILQKGVIKIDGLLGQN
TDFGWIVSGCTKSKGSNTVVATTIECKDLERFWELEEESKEDLESEICEENFTKTTHIDSSGRYVVKMPFKEEQTLGESK
GQAMARFLNLEKKLTKNLNLKEQYCKFMTEYMSLGHMVEANSEGKYYLPHQAVIRDASLTTKLRVVFDASAKTTNNKCLN
DIMWIGPRVQKDIFDIILKWRRWQYVVSADIEKMYRQINIAESDQEFLHVLWRDSPKNKIKDYKLTTVTYGTASAPYLAK
RVLADIGDKCKDPLISGIIKNDFYMDDLMTGSDSIKESKEIVKQVSLELEKVGMNLRKWISNHQEIIENVENAGENKTLS
IEENESVKALGLQWEPFKDEFKFCVKFTISKKINKRLVLSNLAKIYDPLGWLSPVTIVGKLFMQRLWLEEINWDQELDVN
DLNEWKLYEENLKFLEDIRIPRWLKTHVNFPVQLHGFADASEKAYAAVVYAKVEESVTLIASKSKVNPKKNRKTIPKLEL
CAAHLLSKLMQRTKESISNIAESFAWSDSTITLAWIRNGNCKDKFIRRRTDDIKKLMDTEWSHVKSEDNPADIASRGICA
TKLKDCSIWWNGPKWLSMSKDHWPKFQLEQKEEVVVSTVITSTENNISKLLERYSSFQKLERIVAFVLRFIGMKVKKASY
PTFLTVDELKSARILIIKKQQERQFMSEIVCLRDGKEIESKSKILGLHPFLDTDGVLRVGGRLQNSNMRFDVKHPIILDK
CHLSDLIIKKAHAETLHGGINLMRNQVQRVYWIFRLRDSLKKILRECVTCARYRQCTGKQLMGNLPNYRVNASYPFLNTG
IDYAGPYHLKCSKNRGQKTFKGYISVFVCMATKAIHLEAVSDLTSDAFLAALKRFISRRGICTNIYSDNGTNFVGAARKL
DEEFLEAIKHNTGVASEIKNDKIHWHFIPPAGPHFGGIWEAGVKSVKYHLKRVIGDNILTYEEMATLLCQIEAVLNSRPL
YTTGDDIEDNEVLTPGHFLIGRPPLDVVESIQDNDKIGSLDRWKLIQKMKRDFWMKWKDEYLYTLQQRYKWKKGVPNIEK
GQVVLLKDENCHPARWPMGKVEEVHKGKDDKVRVVKVKTQEASFTRPITKICPLIGVKQAEDVMEKAVENKRRVSPRFSK
LGTVMVMLLLTLFCQVSQAATIKGENKSFTIQNINKTAAIYLDPLGDVEIISASWNLVIYYNMDAYFHMIRKSNVLIQKM
RIVCGKLHSFEDQCNIVLDNMQNQLIELKENNNLFMMQERSRSKRAPFEFMGSLYHILYGIMDEDDRKQLEENMRNLLDN
QHNLNELVQKQTSVVDSTTNLLKKTTEDINDNFRNMHXRIENMTEVLKESYYVYKESINFFMITKQLNSLIEEGERVQAA
IISLLIDINHGRLNTNILKPNQLQNEISKIQSSLSETLVLPGKRTGTELKEVYTLLTARGLFIENKLIINAKIPLFSRHP
SKLFRIIPLPIQNEDRMIMVHITSEYLIYNFEIDSYHMMSESTLSQCQRWQQNKRICQGSWPWNSANDNSCEVQPLKPNR
VSNCIYKTVMDSSSYWTELEKKSSWLFKVPFNSKIRVQCTNAEIQLLDLPTQGILSIATDCTARTDDRILIAHHNIQSES
EEVLSSSYVGDISQVPKVVWDPLKLNSVNHTVEIARLNKEIKYLKENHIKLKDLHFHHISGHASLGLGLIITIIXVIYAI
RKYATRQRLQAITFAGPLQGVL
>BEL-8_Adi#LTR/Pao 40-5452 via tfasty with BEL-6_XT, 2 frameshifts and 3 stopcodons. [Acropora digitifera]
MEDLSRLRRRRAANRTFVNKTLEKIDQQLEDYTDDKSKKAKLKAFRDTLNEKLGVLTELNARILDQLDEDDFEKEIDETS
ELKMTIQERIINIELAIKTDSSESKDDDDIGSARSSSRASSSKKTKRLTQTVKLSKLVISKFGGNHAEYQAFWDSFDAAI
HSNETLSDIEKLNYLRSFLEGPAVATIAGLALTKDNYKVAVDLLRERYGNKQVIISPHMESLLKLPRVNFVSDIKRVRMV
YDQIEIKIRSLQALGIKAESYGSLLIPVVMEKIPEEFRLVISRKMKSDTWDINELIEAFKEELEAREKSRFVGGSGNVVE
KPWLKPKIPRDPITAAALFLPERGQANCYFCNHPGHRSFNCTSVTDPEKRKEILKKKGRCFVCLRRGHVxNCCPSEYKCK
RCLGRHHISVCSGGFHLPQDVTQNATQGNAIEQPNVTQPCSGATATLHVGGKNSVLLQTATANVSNPRSEKTVQARLVFD
SGSQRSYIANGLRSSLELPSLRYENLVIKKFGAGSDQPKRCDVVQLCVSKAVGGLNLYVDAYDVPSICAPLSQQKIELAQ
TSYEHLSSLELADSSTGGDGMPIDILIGSDFYWQFMTGxIWFGMYGGPVAINTHLGWVLSGPVYESRQMLVESSTHLSHT
HVLRLDTEQKEENCPLKQELSRFWDIESLGIIPESEDAVYERFLNRVQMKDARYEVSLPWKEMHPALPDNYSLSYSRLAS
LIGRLRKSPEVLREYDRVIKDQQSRGIVETFTSDDATHVHYLPHREVVRSDKQTTKLRIVFDASAKRDGPSLNDCLHAGP
PLTPLLMDVMMRFRCHQIALVGDIEKAFLMVGVNEADREVLRFLWVKDPFSSEPKVEIKRFTRLVFGVSSSPFLLNATLR
HHMSKYALCDPEFVKKFLEALYVDDLSTEDRNVEETYQLFLKSKLRMLEAGFNMRKWSSNSKELIEKIKTSEYGRGVEPT
NRLSELEEDEETYASATLGSNHEVNEEQEHKVLGVTWNHDTDELRIDLSDIVKFSEKLSVTKRTVIKVTARVYDPLGWIS
PILIEVKLLFQKLCQSKEEWDEELSPDTRERYDKWMSELRKVGGIRIPRCYFRENDHTPVSIEIHGFSDASSYAYAAVVY
LRVEVESSVKSVLVASKTRVAPLSGQTIPRLELLGAVILARLVKHVVDALSWTLSIDRVRCWVDSTAVLYWIIGEKKQWK
QFVQNRILEIRSLVGPSCWSLCPTSVNPADLPSRGMKASDLAVSDEWWNGPMFLSLPEQQxPARPDTSLIEECVLSENKG
ELKKEAVPVSTNLVSESEEKTSLSACIGLEHFSSKKKLFRVTAYVMRFISRLKEKIRNTRNIQNFPDQSLSVEEIKAAEL
LWIREVQKSIVYGDKFSQQKLSLGLFLDDKGIYRCRGRLENSALPYQAKYPALLPSKHHLTSLFIECHDNVKHRGVKDTL
TELRSRYWMPKGRQVVKTLLRKCTVCSRIQGRPYNAPAAPDLPGFRVENSYPFANTGVDFAGPLYVKNVFGGESKMHKVY
IALYTCASTRAVHLDLVPSLDAQSFIRSLKRFFARKGVNQLFISDNAKTFKNQEVQQLVKDLGIDWKFNLPRAPWWGGFF
ERMVRCTKGCLKKTLGSARLTYEELLTVLTEVEGVLNSRPLTYVYGDDIEEPLTPSHLMIGRRLLSRNPNTAPAGRSCSS
SVTEVARRAKYLKSLLDHFWNRWQKEYVTELRQFHHYAVNNRGASPQKESTVKEDDVVIVKDEKRPRNTWRLGRVKKLVK
GKDGKTRGAVVETVADNQYRLIEISRAVQHLVPVECKEQGTCQQS
>BEL-5_Adi#LTR/Pao 104-6410 via tfasty with BEL24_DR, 2 frameshifts. [Acropora digitifera]
MATNEAPWSDKGTLSESVDVTLRESDDGTEFTHHILEDIEEENLETLKNEKENENAKHLDTDLNEEPRRIRKLTEKGEEE
KIRRLKQQRTNALTAVSRKRTDINKLMTDRRNLDVVKAELNQLNSLCQQFHDTHKSYHDQLATSEETEIASRYFNDKESD
IFEHRKEVTNWILECEAKISDHLERLSDRRSAKSCSSRSSRWSRSSRSLQSARMKEKAKVAELMAERSLLREKIKLQAAE
EQLQIDLEIAKAKAREKASRNWKMEQKLKLAEVTDESHDSFLALPTPATGRKHEQPSIPGNSPMRSTGVKVKREEREFSP
LNPEKSEFYYHAFPAETKKDVTHLPNTENEMLKEVFKIQHEQIQGMVASQHHLATAIALPEPEVRKFKGDPLEFKTFLMA
FDARVQSRVTNSADRLYYLDQHLIGEPKELISGCLHIEPDEGYKEARRLLQREYGDPYKVSPAYMKRLTEWPPLKYDDGP
ALKSLYIFVSKCNCAMKTISHLAVLNHPPNMQAVVQKLPFALQTKWRENVVKTRRKDGKIAGFAELVEFLEYASESANDP
VYGKEALNKARQRTNGPPQSNKGSSPFKPKVESFVTGLDTVPKPPCSHGTGSSNQNVSARRCPLCEKSHDLEDCDAFKKK
SVEQRKSFLSEKALCYACYGKNHLSKNCTRKRTCKKCKRPHPTLLHIEGFSLDRESGSINKDATDNDKPLKVNNACVDIP
QESNLENDTLLQTILPVVVTQKGTNKAVKTYAFYDNGSAGCFITERLRKRLAATSTVTKIQLGTMHGQSLVDSAIVKDLV
VTDLKDKNPVELPRAYTRQEIPADTEHIPTPEIVSRIEHLKEIASEIPAYDPELEIGLLIGSNCPNALIPLSVVPNEGDG
PFALQLKHGWTVSGPLHLTSEPFTNKVTVNRITVREIESVKEIITPKSLLKMFELDFSENASSNLPEELGHSQEDRRFLT
KVSKGIRLTEGHYEIPLPFRQSEVDLPNNRQQAFKRALWQRKKMIQNHQYRNDYIAFINEIINKGYAEKATKEILKGDPG
KAWYIPHHGVYHPKKPDKIRVVFDCSAKFAGTSLNDQLLQGPDLTNSLVGVLTRFRQEPVAFMADIEAMFYQVFVPEEQR
DFLRFLWWPNGDLTAPLEEYRMTVHPFGAVSSPSCSNYALQKTANDNEEEYGNAVASTLRRNFYVDDCLRSVSTEVKAKE
QIEGLRQVCAKGGFRLTKFICNRRSVLESIPEEERSKDVKTLDLNYDDLPIERALGVQWCVESDTFRFRITIKDKPLTRR
GILSIVSSIYDPLGFAAPFTLKAKKLLQDLCKDEKLGWDDELPESYRNRWENWRSELPMLERILVPRCVKPIDFGEVKSR
QVHVFSDASSVGYGSVAYLRLCDNEGRIHCSFLMGKARLAPIKAVTIPRLELTAATVSVRLGEIVKKELDESLDIVHYHT
DSVTVLRYISNDQKRFQVFVANRVQTIRNLSDPSQWKYVDTKENPADDASRGLDAKALKQQQRWLRGPGFLWQPEKDWPA
QPSSFGEVSNEDLEIKRQVNACVTTITDPPPASTVTKLFQYFSDWYRLKKAVAVFLRVKTILQERRLKRINEQHGPPATA
NDKASKPIIGRSSLTVQELEEAEQSIIRFSQSQSFDTELKSLDQASLDEPGYEQTPSQKRKNEVTKASSLYRLDPFVDGG
LLRVGGRLNPADIPEESKHPVILPREGHVTTLIIRHTHEQLGHAGRGHVLAKLRERYWIIKANSAVRQLISSCVMCRRIK
STPQDQKMADLPEDRLTPAPPFTYVGVDYFGPYVTKEGRQERKRYGALFTCLVSRAVHIEVAHSLDTDSFLHAPRRFIAR
RGQVREIRSDNGTNFVGARRELREAINEMDQKEVTEKLRQQNIDWKFNPPAASHMGGVWERQIRTARRILDTLLREHGSR
LDDESLQTLMCEVESIINSRPLTVIFSDVRDPYPLSPNQILTMKTGIVLPRPGKFQRNDVYMRRRWRRVQYLCNLFWSRW
KREYLPTLQERAKWNKVKRNLKVDDVVLVRDENAPRNVWPMGLVTKVEPDSKGLVRSVVLRTRTTELHRPVNKLILMLTA
EERMDATQNIEEVADKLVQTVKQ
>BEL-4_NVi#LTR/Pao 58-5681 via tfasty with BEL1-NVi, 5 frameshifts and 3 stopcodons. [Nasonia vitripennis]
MGKRTTTSKKTAPPNKKRAPEILSRYEAEDDPDALEVLPPSSADSGEEQGHVDSGGLDGAEAPPSNSSSGKNRSTSAAAQ
KRVLPPVTALQKRQPASTAVAAQKRAPLPKHTTAAAQGRTSIQSATVTRALSGAPQPPASVSGRRHVTSSAAEVRKSAPL
SQSATRVAQGRATLRPATTAAAARAPQKRDIILGSRTQRGVARSRVASYNSSQRQATRHFSPFPNDDYGDGLQAEQLDDD
DQAEQLDGQENSEESALNLSLNENAGIESENESENDRYGEICDDFGDRFHSTECNSRLVRNHVAIQEQSSSNPANEIAEA
IKLTLSTVRESSFYSSNENSKLAHRMSSKSLPTFTGDPIEWSRFKQVYEVSSELGAYNDKENAARLYDALRDDARKAVKM
LYVSGSSAEEIMKVLEMRFGNKKVILLKVIREIKNLPKMGSSKSDLINFASDLRGALGAIKVLDSGYLCSTELEDEIIKK
LPDSVISNYIRFAAHDDNQKSKLEKITEFLDKEAEMMIRAGVVTDQSHEFNRKKSDHSSKDSRDSHNTYRERSVCTTNQN
ISELPTRQNNQRCAHCGRKNHSTEFCHDFQKAPNYQRWKVARSNRLCFNCLREGHSRLKCTQPSCKRCGRRHYSNETEQL
KPTDQESPSQSSDKPADISTFTQSTNSTSxLASQTFLKLIPVRINGTSSFKIVYALLDEGSTATLINSRIVKEIGVRSTK
IDIAIKGVGSEIESMFSSENVDIEVSSPFSNFSLTNVLVVNNLALPKQCVPSGLIELCAKLMGIRVSAYHQAPDLLIGQD
HSSLIITREFRVIQKALYVSRCLLGWCIHGNFLNNEVSVRLKLDRDEQYAKLYYCEMERLIKNGFAKKCANKPSGSRIWY
LPHFGVSNINKPGKVRLVFDAAVATSSVSFNKLLLSGPDLLKSLLGVLMRFRxFHYAIKDDLRDMFLKINIQEADRDAQR
FLWRGCDRTIEPDKYVMSSVLFGAKSSPFTALFIKNKNASLCSSTYPAAAKSIIENSYIDDFLESCETREEASSRVQQVV
EINKHANWEMHGWASNDASVLSNSNINSNDKQPINFETKDNIEEILGLRWVNSTDELIFKINIEKISQDLRTGAKKPTKR
VLLKIIMSIFDPLGFLTPFTIEAKLILQGVWNSKIGWDECIQDTEFDQWKRWLQKLDxIKLLHIPRSYRSKNCQVKSAEL
HIFCDASSKAYAAVAYWRICLKDDSYHVSLIMAKSRVAPMKETTVTIPRLELQAAVLAIRVANIIAKEHDFQISRRVFWS
DSKTVLHWINKEPREFKIFVANRISENSSTSEWRWIPSSENPADDGTRIAPDALAKDSRWFLGPEFLKKSEESWPVEQVS
NFDKGDSERREKPVFCAFTITKRVYKLFDFTKYLSQFSSWLRLIYPIIRFYEAINKMRKLDINLVEIRDKAEKMCLEWSQ
SVAFSVEINALKNSLPISKKSKIAGLNPFLSKDGILCSNSRLINLEECEISTQPIILEGSDKITRLLVKHYHESCFHGSH
ETVINELRQKYWIVGLRHLLRSIVSNCAICKWFRSNPSTPKAALPLARLGYRLRPFSHCGIDYFGPLNVKVGYRRREKRW
GVLFTCMSTRAVHIELAQTLSTSSAILALKRFTGRRGTPFVIYSDNGTNFIGINNEIKKALKDLDRKKLNEFAAKKQIVW
KFNPPTASHMGGAWERLIRSVKNALNVVFKDQAYCEELLQTILIEIEHCINSRPLTHVSIDPRDKEALTPNHFLLGASSG
EIRLGRCDKQIECSRKQWETAQYMADKFWDRWLREYLPTLIPRKKWQENESPLIVGDLVLVLDNNLPRNQWKKGVVTRIF
PGSDGQVRVAEVRTSSGIFLRPSRKLIRFTVVQNS
>BEL-6_DMoj#LTR/Pao 653-5855  [Drosophila mojavensis]
MNNLESSADQVPASQVTYLKRKTKALFDRLERLYAESDADKLSHMDSCDLRVLLDSITKLESNFDAVHTNLEESDFESIS
SDLPAKFESILLKFKALLQRELGSRPNQQFSSTLNTSFTNANPVLIMSNRSRLPQLELPKFSGIYTEWENFFSMFKTIID
ADSELSPIEKLQHLRSCLSGAALDTIGSLEINRANYSVALDILQRRFDNKRFILQAHIRAIFGLEKADSSVGRLRQLADK
VTSHIRAMDSLASREEVADCIIVQTVLQKLDKCTQAKWEERSSANELPSWAKLSTFLQERCRMLENVDQVLQDGQVGKSG
KIVSTYLRKSFVASKAPSRCVFCEDTSHMIFQCKRFEQLPPIARHKEAKRLALCLNCLRKGHQLKDCKSSTCRTCQSKHH
TLLHYNQSSVDTSNTVQQTNAIHSSAMVAMSPSLPQAHLSPHSSDVVLLATAIILVKNRAGTFVPCRVLLDSGSQLHFVT
TQFANQLQLRKRKSLSAVSGIGDASFSTEGYSVDLVLKSRISDYSTTISAIIAKTITDNQPGISMSTNSWNIPSNIKLAD
PLFYKSQRIDLLIGAGLFFELLCIGQIMLAPGLPVLQKTQLGWIISGGGQSAPKLSSFIVTQRASDDTNLSTRLDDLVRQ
FWEVEHVFEPIAKVTTEELHCQQHFIATHRRLSSGEYLVCLPKKQGFESLGDSYVQAKRRLLNLERKFARNYAMKEKYSA
FMKEYIDLGHMSPVLSAEISKCKYFLPHHCVYKEESSTTKLRVVFDGSAVTTSGLSLNDILMSGPTIQATLFHTLVRFRT
FSIALTGDISKMYRCVKVSEPDAMLQCILWRNSSDDDILVFKLNTVTYGTKPASFLAIRAMHQLAMDESSSYPLGAKTVL
RDFYVDDLISGGNSVEEVRDIMEQTKNLLERGNFKLRKWCSNSINILRGVPEIEQESFLKLGDGTDVTKTLGLIWEPRKD
SFVFTFEPKISVGKHTKRSVLSTIARCYDPLGLIGPTLTRAKIILQRMWRDKLQWDESLPQSLETIWSEFCKDFHQVSNA
TFPRYVLELKARVELHAFCDASLQAYGSCVYVRSSKNNAVKVHLLCSKARVAPLKTLTVPKLELCAAFLLANLISEIEKL
NLFKCEMHCWSDSAVVLSWLKEEPSKFNVFVANKVCAIQQLTIGMEWHYVPTEMNPADMLSKGAAPLELLHSKLWMHGPS
FLQEEKCYWPRHCLPEACLPEMRQRVLLSAEHVDISLSFKYINSFGIMKRIFGYVHKFIRKIKSPELSSDDLRQGSFLLC
RLAQRAQLQPEYSALQNGRNIHSSSAILSLFPFMDDFGLLRVGGRLGHSTLGFDARHPIILPKNHPLTFAIISHFHQMHH
HAGPQALLAAIRLQFWPIGGMKTVARELRKCIICCRSRPRLVEHIMADLPKERAQCSPAFTITGVDYCGPFYYKPDGRNR
ASVKCYVCVFVCFTTKAVWLELAKDLSTAAFLGALKRFVSTRGIPTCIWSDNATNFVGARNELADLRRLFLSQEHRTEVH
NYCINNSFDWKFIPPRSPHFGGLWEAAVKTAKRHLYRSMGSALLGFDELRTLVCQIQAIINSRPLVPISENPDDLGVLTP
GHFLIGRPLIDFPEPDLSRINCNRLDRWQRMTYIQQLFWKRWSEEYLTILQQRVKWRTPRPSIKVNDVVCVKDENLPPLK
WPLARVVEIIAGADGAVRVAVLRTPTGTTRRAVNKLCVLPVDDPVKSHGLLTVGR
>BEL-7_DWil#LTR/Pao 195-5520 via tfasty with BEL-612_AA, 4 frameshifts and 7 stopcodons. [Drosophila willistoni]
MAPTGNCGMCQEPANQETLTCSRCASQFHCTCCGSKNSATSSSWMCETCRHVPDEGDRNLETESHFKVNQPGDKDQHVED
EAMPEDQQILLQQLEDEVCLEREYLRRKYALLHTRVQSNGEAKNHPQHAAGIPGYIMMTDDSATNTPQATSTRAQSMPCK
ANGITPQQVAARQSMPRELPVFKGDPREWPLFISTYETSTRIGGYSNEENAMRLQRCLKGRALEAVRDSLLFPEMLPSVI
STLRMYFGRPEHIIKLLIVPPPKGKLEPLIEFAFAVKNMCATIRASKLDAHLKNPTLLQELIEKMGPDMMLNWALHLKSI
PYPNIQHLADWLFELAEAASRVSTPTYYSESDKKRTNRGVMHTHTAAPTDNHKQIFCAIKGHHKPVSCEKLLRMSVEARW
NAINNHHLCAQCLKNHKAKHHHLLHKEVTESVLHNHRGSLTNQPECYVRIVPVTLHSNSKSVDIYAFMDDGSTLTLVEEK
LADALEVKGFVNPLCIRWTGDVSRQEPEFKQLNLRISKQGQGNKLFKVNEVCTVKSIGLSAETMIADRIKQRYPHLKNLP
IPSFVNAMPQMIIGSNNPNLIASLIVREGKWQQPIAAKTRLGWTIYGGLGRSGGGLNLHRCQCDLDLHEMVKKHLLTEEK
LPPMFTKFPDEERSLQILEDTVSYSSRTYTTGLLWKDGPRVFPNSLPVVKRRLLCMQKKMAADPSFANELHSQIQNLIPK
GYARKLAEEEVVEKPENAWYLPIFTVRNPHKPDGVRLVWDAAAQSSGVTLNDFLLKAPDLHVPLLQIMYNYRMRAIGVRG
DIAEMFHRIAVREEDAKAQRFLWQNQTTGVIETFQLNVLTFGATCSPCIAHYVRDLNAKKHADEFPSAAKAIQRRHYVDD
YIDSCHSEEEAITLARGGFAIQQPTKKNSSLIVKRHTLMSKYWACGGAHVKMPMHxSLYAxSATxxRQKSRRFRDSTTYK
EKQFFNSEETHSYEKILGMRWSPRQDAYALKFVRLKRNIIATKVAPTKREILQVLMSVFDPMGFVSCIMMYLKILLQQVW
RSKIDWDEEIPPKLQDMWQSWLSFLPLIENVRIPICYFKNWHAHDCRVxIHVFVDAGEDAYSAVAYFGIEQNNQILLSLV
SAKSKVAPLQPLSIPRLELQAAVTGARLMKNIIAQHEIDFEECYLWTDSKTVLAWLDGDPRRYxQYVMFRIAEICELTEA
RTWRWVPSKLNVADIATKRQHRPETYTQWFEGPKFLKLPPADWPTETPMKVPNELRPRFLHMRREPARINYEYFSKWNRL
TRAIACWLAYKGKLINKIRKSNENSNQLASRNIQQECYNEAIENGHHACRSSPLWRLQLFLNGQGVLCVRDRASRFAGIP
EGRIALPPQHWVTKLIVRHYHEKYYHMNHETNEVRxKYFIPKLRPLLKGIRRDCQQCKLSSARPIAPLMAPLPRARLGAF
KPAFTYVGVDYFGPLTVIDGRKSLKRWGMLITCLTMRAISIEIVHSLTTNSCLMGLRRHISRRGIPMEIYSDNGTNFRGT
DAFLKDKLQLEDAKMHRELSQQEISWYFNPPSAPHMGGAWERLVRSVKTVLYRITPNQKFSDESLLTAMAEVEMTVNSRP
LTYVSLDDEYQEALTPNHLLLGSSNGEKPICDPEQIDYKWSLRQSEMFANIFWKRWVKEMLPNITRRSKWHKKVKPIGVG
DIVLIVDENQRRNTWTKGRVVEVTTAEDGQVRQAKVQTQLGVLSRPAVKLAVLDFGKDEASSSGSLAGRGMLPKFGPANK
LCTTVLQNGTLSEQTE
>BEL-6_DWil#LTR/Pao 828-6108 via tfasty with ROO, 1 frameshift and 2 stopcodons. [Drosophila willistoni]
MFPTKTEKLLAKQHELHKRLKKLEELDASKFTSKIINEVNEIQKLWISYHSQMLESGVTQHYYFTDGKYEEGLDMAAKLL
AKGESSRQSTVGSETIEADATMSENVEVSNGESRGNATSSIENQEKFEEKVRHLQQYLEMVSKDLRTIDNRTGEMYIKEI
KFLFRKVQVCQAYTHELYRDNETFKEVIEELEFDLQNTLVALEEKINDQKSLKVENVTVRGELPVLPKIQVPTFSGEPRE
WDLFVELFTELIEKREDLSLALKFNYLKSALKGKARSMVAHLLSGSADNYSAAWELLNKRYENNRRVFSEQLSRIVDLPM
INNESAKSVKGVIDIINESIHLIKIKANLSDEVDVIFAQLLLRKFDREALQLYESQIRKTREIQKLSDVMEYLEQRYCSL
CAMRKDEKKPFQKTSVAVFKDSCPICKGPGQSTPLCYKFKALTPKERVEIAKKVQLCTRCLKHSSNKRCTNEMVCSLCSK
GHHTLLHFGEKQAKVNTCVTAEQKLLATALIQVKKINGECETLRALIDNGSQSTILSEEAAQMLKLPKIKKQTEISGVSS
TKPRTSKYRVNIEMKTRDSEIELIKVEAIVLPQLMKALPLKIANVDMSKWQTYVLADPTFNKPGRVDMIIGIDVYTHILK
SGVTKINGLLGQNTQFGWIVSGCTKSKGDESIVATTIDITDMERFWEMEADEKDDTEASECEENFNKTTMIDASGRYVVT
IPLKQEKELGDSKAQATARFLNLEKKFQKNPKLKEEYEKFINEYLELGHMVETKVEGAYYLPHQAVIKEASLTTKLRVVF
DASAKTTNNRSLNDVMWIGPRLQKDIFDIIVKxRKWQYVVSADIEKMYRQINIDLNDQKYLHILWRISPQKKLRIYKLTT
VTYGTASAPYLATRVLAEIANRCQDKVISEIIRDEFYMDDLMTGGNTVQESKRKVQQVSRELEKAGMNLRKWISNKSEII
EEVIDTGDNKVLKIDENEAIKTLGLQWEPIKDEVKFKVHCDENRNVNKRGVLSTLAKIYDPLGWLAPVTVIGKLFMQKLW
LAEQNWDQELSDNETTEWKSFRENLVYLEEIRLPRWIKTQPNMLLQIHGFADASEKAYAAVVYAKIGEAVTLIASKNKVN
PIKNRKTIPKLELCAAHLLSQLLQRVQQSTAAPSEKYAWSDSTITLCWIKNGASKEKFVRRRIEDILKIKEITWNHVRSE
DNPADVASRGIYPNKLKDYELWWNGPKWLAREAKNKCPKQKSDDDKVMVNSVLLNTESSIMQELIEKYSCMNKLARITAY
VLRFISIKKRDKVYPSYLTVNELKNAKNFIIKQQQAYQFSREISCLTQNKQIDMKSKILSLNPFLDNDGILRVGGRLxNA
NICFDTKHPVILDKSHLTMLLIKDAHKETLHGGINLMRSQIQRKFWIFGLRNALKKYLRECVTCARYRQVTAEQIMGNLP
KNRVTVSSPFHSTGIDFAGPYHIRCSKNRGQKTFKGYIAVFVCLSTKAIHLEVVSDLTTDAFLAAFRRFVARRGKCANIY
SDNGTNFVGAARRLDEEFKKAVQDNVQIAPILEREQISWHFSLPAGPHFGGIWEAGVKSVKYHLKRVIGDSNLTYEELAT
LLCQIEAVLNSRPLYTTGEDMDNNEVLTPGHFLIGRPTLEAAESISEEKILVAHHSVQSESYIAIKTSHVGDISNIANIA
WNPVEANIVNHSAELERIGSQLKSLKEHHIELLGLNFHHVTGHASLMLVILLMIILIIVCLRQLNKNKRIPIAPFGGPSQ
>BEL-24_CQ#LTR/Pao 410-2350 Fragment (N-terminal third) [Culex quinquefasciatus]
FEECQKEVSEEEAGNGGEKEEVTPICKQLLVQRKKEDARKMEEQLKALVRQRDAVERRLKRVQADLKTSTAAPNENLRNV
HFVKHQLSNVESAFVKFGEYQEKIYAMALAVEEQAKHEKCELEFEALRRGLTVKLKGLVEDLEKPGLNATNVPAASPHYL
PPLNVPLPKFDGTYETWLSFKSMFQHVMARYTAEAPAIKLYHLRDSLVGKAAGVIDQDIVNNNDYEAAWAVLEELYGDKR
VIIDRHIDVVFALPKISRDNAAELRKLIDTCGKHVEGLKSLQLPVNGLGEQMLLNLLASRMDRDTRKAWEAEQKVGVLPT
YAATIAFLKERCRVLERVEPCGETNVNPQRSVALVVASGAKCYTCNQQHEIKDCEQFKSRSVNERFSQLRKHGLCFNCTK
RGHRAGECTSTNSCERCKKRHHTMLHKDSPRKPEIAPNSTAADAANPKQRRHFGRGPTCCATTKKLVMLPTAVVQVYGEN
GVPHLCRTLIDSCSQNHFVTERFANLLAVNRERVNCEVSGLNEDTTRISHLVRATVKSRVGDYAADVELLLTPKITGDVP
AKMIDVAGWNLPSNVELADPNFNHSGRVDMLLGAELFWDLVKDGKISLSENLPSLRETEFGWIVGGALPIRTPVTASSFC
GVSTRG
>BEL-192_AA#LTR/Pao 24-5904 via tfasty with BEL-632_AA, 2 frameshifts. [Aedes aegypti]
MDVIYPCCEEDDQYDAMVQCGRCQKWHHFSCVGVDQSIAELVWYCRTCLGEDVSARESLGQPGVTRIQPSRAAKKSKDHT
GKISDKTSQKRIDILVGTKGQKEVAERPTSQQEGNKGQETCQAGTSAAGQTSIAKSVKPSRSRVSIISENSRSESNKSGK
SSKISGTSKSSSSKRDLALKRIEELKERSRLEALEEETQLQMLKIKQKQIERQRRELEELQQLSKLVEEESECNEEPDNQ
VGSDISYIDKVQGWMNSCNGANPGRPDTASEANASQFSLMFPEVSENEIIRRQQVQQRTSSMVVGPTTHQIASRQVFPKN
LPAFAGYPQDWPLFISAFEQANASCGFTHAENLVRLQQALQGKALEIVRNLLLLPENVPMIIDKLRRRFGNPEILSTMLA
QRIQKLEGPDSENLESLIEFGSAIGEFTQHLEVSKLNDHLKNPILMQSLIQKLPPCYAMQWVEYKRNCQVVDLKTFGKFM
EDLVDKALEVTFERIEVGSSKRREKPKAKVFTHLMKEDHEVNDSKANLYNKPSSGQVQISQRKDVSCSICEELGHLGRDC
REFRNASLERRWMIVKHMGLCPLCIFNHGKWPCRSRNRCEVEGCNGLHHSLLHNPTNAEAVNREARCNSHCLPNKTVLFR
IIPVSLYGEHRRWNTLALVDEGSSTSLIDNEVAEFLQLDGPREPFEMRWTNGVSRTESHSRNVEMKISGIDKIKESEICV
ARTVNKLDLPAQQLDASKLIEEFRHLEGVEISSYALDTPKLLIGIDNMHLIAPVASQIGNKGQPIAVKCKLGWTIYGPRP
NLLSNVHFLGHHRCGCEECSKADQDLNQMLRDSFQLEAVGVSPVRLESRDDCKAREILERTIKRVGDRFEIGLLWKDGVP
RFPKSYSMAYNRLKNLEARLKRNPSIRDILQRQIDEYVSKGYAHKITERELLETPQEHCWYLPLNYVVNPKKPEKVRMVW
DAAARTNGVSFNDSLLKGPDLVASLSGVINGFRERKVAFGGDIREMFHQILVRQEDKQAQRFLFRSDTNSEPDIYVMDVV
IFGASCSPCLAQFVKNFNALEHQQKYPIASDAIIRKHYVDDYFDSVDTEAEAISRAKDVRKIHADAGFEIRNWVSNSSKV
LEELGEAECTIMTKSFDKASDAERVLGIMWQPEKDSFVFSTEFREDLRPYIQEGAWPTKRIALRCIMSMFDPKQFLAPVL
IHGRILMQDLWRSGIGWDEKIGKAHHDRWLRWTALFPLIDNISIPRCYLGKMSPNTYDTVQLHVFADAGEDAYGCVAYFR
FTDGENFHCALVEAKAKVAPLQHLSIPRKELEAAVLGARLLVAISENHSIEVKKRFLWTDSNAVVSWVKSDSRRYKPFVA
HRVGEILSKTSPEDWRWVPSKHNPADDVTKWGEATQLSSNNRWFCGPEFLYQTEDNWPVQKWNSLEIEEELRANVLFHDI
VLPNAVLPRVEHISKWKVLVRMVATIYRFVSNCRRRIDKQPIEALPITKKGLAKIPAKQVPLRQEEYLLAENLIWRVTQG
EAFADEVKTLIKNQDSSVNQFGAIEKSSPLYRLSPFLDQSGVVRMEGRTTAANYATFDVRFPVILPKEHIIARKLVEFYH
QQCAHGSREMVVNEILQRFYIPGLRSLVESVTRDCIWCKVRKAKPVVPRMAPLPPSRMAVREHPFSYVGVDYFGPVEVAV
GRRREKRWVALFTCMTIRAVHLEVVHSLTTQSCKMAIRRFVKRRGSPIEIFSDNGTNFVGASKDLAEQIRAINSECADTF
TGARTKWTFNPPSAPHMGGVWERMVRSVKEAMQVLAYGERLTDEILQTTLVEAENLINSRPLTYVSTNVQEDKEAITPNH
FLTSCPLVDCMPSRSSTELADRLRNSYSQAQYLADELWERWQREYLPTMNRRTKWYKESKPLAVGDLVYVADSEKRRTWE
RGVIEEVFAGDDGRIRSAIVRTKTGLKKRAVAKLAVLEIGA
>BEL-191_AA#LTR/Pao 735-6175 via tfasty with BEL13_AG, 3 frameshifts. [Aedes aegypti]
MIQRAGARPAARAAPGAGRPRRAGGRPGRPPPRARRRPAGAAAGGRPGRAGGDQDMLEGWQEYLEEIYGEFKRVRLELEL
SDEFRNALEQSMKVEEGSSDNLDLTIKATRAEVELTYLKIKGFIKSKLQKPSTSTVXAAQPVPLPVNTIQSRVKLPEIKL
PHFDGSIRDWPTFRDTFRSLIDSTPQLSNVDKFSYLVSSLSKEAKRVIEVIEVTSANYSVAWELLEKRYENKYLIVKAYI
EALFRVESMKKECPDSLNKLIDEYERNLRMLEKVGEHPENWSTLLVFMLSSRLDPATMRHWETHRRSTNVPTYKELIEFL
RSHSLILQSVAAPKYQPSDPPRTTPSARNAPIKLTSANSAISPPQKSCAFCKQSPHSPFHCEVFRKMTASERFDATKKNS
LCINCLSPSHQMKNCSSGACRVCNQKHHTMLHQRPNPSNQTSPPTQTQPSKPSSSSSSQSSFSPSAPTNHSQSSHASKPS
TSSNENQAPTISALSTHHVSSSPSKQHHRVQSTVLLSTALVKVFDPEGQSLWARALLDSGSQLNFVSEQLVQKLKLKRSK
DFLPISGVGLSSTSSKYSVVARIQSHHADFETSWRFHVLPKITMELPTQAVDVSSLQLPSDLVLADPSFGEPGPIDLIFG
AENFYDLLREGHFKAGPYQPNLQNTALGWVVSGKVESAILESSVVNVAYATPTIEEQLARFWEIESCQNSSTLSLEETAC
EQHFSKTTIRDQRGRFVVTLPKRESAFAKLGSSKVVANRRFLSLERRLNADPQLKQAYTAFVNEYAELGHMKLVDNPETH
SPTYFLPHHCVVRPDSITTKLRVVFDASCATDTGVSLNDALMIGPQVQDDLVAIILRFRLPQFAIISDIEKMYRQIGMDP
VDQRLQLILWRDSPSEPIRTYQLTTVTYGTSSAPYLATKCLQTLANIGLEGHPAAAAVVGKDFYMDDLLTGADSVEEGQE
LVLQLLQLMNSAGLQLRKWASNSPQILQVVPEHLRDERTLLDLEATSPVKTLGLQWNTRTDEFCFEVPKHSDVHPVTKRI
VLSDIARLFDPLGLVGPVVVQAKLFMQELWREGKAWDDELSNSAQQRWVEFRENLRDIASLSVPRWVFATPSIAAVEIHG
FCDASTLAYGACIYVRTVASNGDISANLLTAKSKVAPLGNSKRNPTISLPRLELSGALSHLFEKVESSTNIQARSFFWTD
STIVYHWLSSNPSRWKTFVANRVSEIQRITAKGIWAHVPGLENPADVISRGMPPSELKEFTPWWNGPDWLRQPSRFWPSL
SAPVQDEYPPDQLEERIVALPVQVCPPNELFSLFSSFTKLVRMVALVRRFHYNSNPRNRNAKRTGFLSTVELDQSTEQLV
KIAQEERFSQDIAEVIRDGQVKKNSRLKALLPRLVNGILRVGGRLRNAPVTYNQRHPMILPDRHPLTEMILRFYHLNNLH
AGPQLITAAVRERFWPLRIRDQARQVVHSCLRCFRCKPEVMEQLMGELPSERVTPTLPFLRSGVDYCGPFFYRTSRKGVP
IRCYVAIFICMVTKAVHVECVADLSTSAFIAALRRFVARRGKPQLIECDNALNFRGAKRELDELVRLFGSQQHQHLVTTS
CAEDGITFKFIPPRSPNFGGLWEAAVKSLKKHLRCTLLNTILSLDEFQTLLTQIEACLNSRPLTQLTADPNDLEVLTPGH
FLVHRPLITMPEPSLADVPMNRLDRYQQTQEYVRRIWRQWQSDYLSGLQPRTRWTRQRDNVNVGTMVLLKDDNLPPLKWR
LGRVTQVFRGDDNYVRVVTVRTQDGEFRRAITKICVLPIQQPGGDPIADEPEGN
>BEL-222_AA#LTR/Pao 1191-6505 via tfasty with BEL-641_AA, 1 frameshift. [Aedes aegypti]
MAERLIKEKIKKRERMFASLKRHQQFLESYNQEIQSGQVQSRLDKLDDKLAEFEQLQEEIADLDDNEQYEEESNMVAERF
ENQYYAIRGALLMKIAPPVITPPPLDATVLRNTTAAGFHSGVRLPQISLPDFNGDYRNWLSFKSTYESLIHESTELSDVQ
KFHYLKSALKGEAAKLIDSLTITSGNYVIAWETITKRYSNEYLLKKRHLQALMEYPKIQQESATAIHGLVDEFEQRLKIL
KQLGEKTDTWGALIVHWMCSKLNDQSLQLWEDHAASLHEPTFTDLVNFLEKRTRVLEAVSSNVSESSKSSQKASTKYSKQ
MVHAATRNGGERSSSSVACPCCGENHYMARCAKFMNMDLKEKLELVNNKRLCSNCFRPGHWVRDCNSTFSCRTCSRKHHS
LIHPGFPPGNGTTSNGKSGGLQAKNTETPCASTNVVTNGSEVEQCEIEQEGAVGAYNAGTKGANSSVFLSTVVLTILDQN
GNKQLARALLDNGSEANIMTERMSQILKLKRRSVNVPVCGVGESETRARHAVSTIISSRVTDFSVGVDFLILQRVTSDLP
STTVSITQWKIPENLRLADPNFNNSNRIDLLIGAEHFYRFLYEREMKRVSLGPGLPILVETVFGWVVTGKHTVAKNQPIN
CCLATSTENLEVALERFWKVETTEDLYSKEEQDSETHFKETHTRLEDGRYVVCLPKHVNFDRMVGDSRSRALDRFLNMEK
RLERNTEMKIQYHAFXQEYLDLGHMRKLDDDEIQATCHSKARKTFXLPHHAVLKESSTTTKVRVVFDGSARTDXGYSLND
ALLKGPIIQDELLSLLLRFRKYEVALVGDVEKMYRQVRLHTDDTPLQRIFWRFSTVDPVSEYELLTVXYGLTPSSFLSIR
ALHQLAADEGTDFPVASASLVHDFYVDDYIGGAPNVNEAIQLQARLDALMSKGXFVLRKWCSNRPEVLLDVPPDQLGTNL
SITFQLNPDEEIKTLGITWEPSSDKLRFSVDIEDRRTVWTRRCILSCIAKLFDPLGLISPVVVYAKIIMQQLALLQTNWD
DPVPIQLENKWTEYYGQLNRLSELRIERFAFIPQWVDVQIHCFADASELAYGTCLYVRTIDQAGNIYVEMLSSRSRVAPL
KRLTLPRLELCAAKEAANLHSKVIKALDLGQIRSTFWSDSTIVLHWLEAPPNNWKTFVANRVSAIQALSQGHRWKHVAGK
ENPADLVSRGMTVHDFLQSQIWRNGPPWLRTPEETWPSEAQEINFTDEELESRKVVSYATNVSLEPNVIFSLRSSLETLL
RIVAYCLRFCHNCRLPDQRNRTPYLTVEEISSAKLALVKLAQNECFYTDLQDLHKHGNVSRKSSLRRLSPFLDKDHVIRV
GGRLRHSDQEYTAKHPAILPSKHPFTNLLVNYYHRQTIHGGRQLTLSTMRQDFWPIHGKRVVDGVLRKCYRCFRVNPTPV
QQPTGQLPSTRVRPSRPFSITGVDYCGPFYLKPPHRRAAPPKAYISVFVCFATKAMHLEIVSDLSTTGFLAALHRFVGHH
GIPLEIHSDNAKNFTGAKNELNELFNILNDKSSQERIGNELSLQGITWKFIPPRAPNFGGLWEAAVKSVKAALKKEIGIH
QLSYESFATLLVQIAAALNSRPLVPLSDDPSDLNALTPSHFLIGAPMNALPERDLLNIPANRLSQHQQQQQMFQKYWDRW
SRDYLAELQTTSKNLQPSPIRIGSLVVLREDNMPPLYWPLARIVDVHPSAEGVVRVVTVKTVSGIYKRPVCRICPLPPDK
ETVIEEGSSSSM
>BEL-225_AA#LTR/Pao 101-5981 via tfasty with BEL-643_AA, 6 frameshifts. [Aedes aegypti]
MVKAGNFTLTPCGVCSETSETNEGMVGCDACDLWFHFRCVEVTEESLDGLEKWFCPSELCQKVAEGMLRKPDDRKKKGKS
KGAKTLATEESDKSSVKSDNQSGSSLEKRLQALEREQKAKEQEMEIERILREKRIEMDRVLKEKQLKIENELREKEMQVE
KEMLEKALRDEKAHADRMQRMRESYQNAIMGVKNMAMKSRNSVDPDTKFEKGIVEETIPREGEGSSWHHKKMLDTPLRNP
NVSQRTIPEKQRKSVDKYAQKTEFENSSEDDNDSVNETSDEESEEDCSNSEISSEEREEASECEIEVPKSLGYQNKKKKP
VSHGLGRQLAGPSKAQLAARNGLSKKLPIFTGKPEEWPLFIGSYEASNTACGFNDVENLVRLQESLKGNALESVRGQLLL
PKSVPKVINKLRQLYGRPEQLLYCHLERVKRLDPPKADKLESYVPFGNVVEQMCDHLEAAGLKEHLINPILIQDLVDKLP
AGDKREWVRFRSKKKTVTLRTFSKFLSKIVAEACAANVNLENQQEFKTKPAPAGKGRGMDKGAVYMHGANEAFAAGEEQK
LKPCRACKRTDHRLRFCQDFKAMNFVDRMKIVEKGKLCKICLNDHGNAPCKFKIRCNVEDCRDRDRHHSLLHPVDNLVVI
NTHIRSSSSIMFRMIPVTLHYGEKQVTTLAFLDEGSSITLVERSLTDRLSVEGVKWPLTIKWTADITREEPNSKMMNLWI
SALGNEERLPLQAAQTVEKLLLPKQSLNAGTLAAEYSHLRDLPLTSYSDQHPGLLIGLNNLHTIAPIEAKVRKIGEPIAV
RSKLGWSVYGPTSRKTNDTVIVGHHDAISNNDLYNLLKEHYALEESVVKVVQETKDEKRAREILERTTIRVGSHFETGLL
WKTDDWIFPDSLPMARRRLKQLEQRLERYPELYEKIRQQIEDYQLKGYAHLATEKELAETVPHKTWYLPLNYVQNPKKPS
KLRLVWDAAATVRGVSLNSQLLKGPDMLTPLTSVLSLFRERRVAFGGDIREMYHQLRIREADKHAQRFYSGRTPESEPSV
YVMDVATFGSASSPCSAQYVKNRNASEFSATYPEAAAAIVHKHYVDDYYDSVDTVEEAIRRAKEVRFIHSKAGFEIRNWV
SNSAEVLHSLGESNPTKDVHFNVDKTTENERVLGIIWSPNQDSFSFATDHRPDLQPFVDGIRRPTKRLVLSCVMGFFDPL
GLLAPFTIHGKTLVQDLWRTGCGWDEEIDDEALQKWKRWTSLLKQVADIRIPRCYIGDAHSTEIDSLQLHIFMDASEHAY
GCVAYFRAVVDGQVRTSLVTSRTKVAPLKRQSIPRLRVDGCGTRVRLLRTVQPQHSLPINKYFLWSDSQTVLSWIRSDQL
KYKQFVAFRIGEIREHTNISDWRWIPTKTNIADVLTKWGQGPPLESSSEWFSGPQFLSDPEDQWPVGPLPAVDTSEEMRA
CVLHHEAIQSEPVINVDSTNRLGCLLRSTANVIRFIANCRRKVAGNPIVVSRATAGQIRLLKAETISIQQPLQQEELRAA
ELVLWRQAQREGFPEEVRILEKNQRRDASTERIKKSSTLYKMTPVMDTEGVMRVGGRLQQAEFATFDMKHPIILPKEHAI
TKMLILQYHEKFAHANRETVCNELRQRFHIPKLRQAIRQAVKDCMWCRVNRCLPQTPMMAPLPVQRVTPQLRPFSSVGVD
YLGPVEVLVGRKKEKRWVALFTCLAVRAIHLEVVHGLTTQACLMAIRRFMCKRGAPEEFFSDNGTNFKGACGELARLKQL
NQECAESVTGTTLKWTFIPPGTPHMGGIWERMVRAVKEALKALNDGRKLTDEILLTTLSEAEDAINTRPLVYSQDSAETE
AITPNHFLRGTVRNADLTVDDTADFAEALRDLYKRSQYLADQMWQRWCKEYLPTINMDPNGSKIEASTVGDLVFIVNDGQ
RKNWTRGIVEEVFEGNDGRIRQVNVRTTKGVSRRAVANLAL
>BEL-224_AA#LTR/Pao 605-5920  [Aedes aegypti]
MAEKKMKSKELKRKNTMDSIQRIEDFLVNFDAERDKHEITIRLSRLDKLMEAFESIQGEYEAFDDSPAFVAANAKVRAKV
EEQFFRVKGGLMSKDIPPPNPAQPLNQQVAPAIAHVTGVKLPTIELPRFDGDLNDWLTFRDSFSSLIHSSPEIPCVQKFQ
YLRSALRGDALKLIESLTITANNYALAWEALLDRYSNSYLLKKKHLQSLMVHTKVSGKSPVALRNVVEDFQRHVKILNQL
GEPTAQWCSLLVQLLCARIDDHTLKEWEEFVSGNEDPTYENLIHFLTRKIRTLESLHISAEQPYTSQGKHYPPVRQSKQQ
SNSSPKINSFSAVEHTQPSCLACSDCHPLVKCPVFEKMQLKDRLNLVNTKRICSNCFRSNHFARNCSSNFSCRHCQKRHH
TLLHPGFDSPGTNAGNSSSNQVNRPVSPPKQSAANGDVVSNSSGGANVISSNSVVEPRGVNVFLSTIVVKVLDGYGNEHL
ARALLDSGSQCSLMSDRLCQQLRLVRHRIEQPILGVGESQIRAVCSVNTEARSRFGDFSIPLNCLVLKKLTSDLPAVTIP
ITNWNIPNQIDLADPEFNVPRKVDLIIGAEHFYAILQGGRFPLGPKAPTLVESKFGWFVSGKASYEAMPHTLVCCMSTLD
SLNQNIEKFWKLEELDRALPSPTEQYCEEYYKKTVSRNPDGRYIVRYPKKDNFQDMVGESLVNSKRRLEGLERRLDSNPI
LKERYHAFIAEFIELGHMRKVPPTEPEPHTVCYIPHHAVQKESSSTTKVRSVFDASAKTSSGFSLNEALLVGPVIQDELL
DIVIRLRRHKVVLLADIEKMYRQVEIHPDDRPLQRVLWRFNKSDPITKYEMTRVTYGLAPSSFLATRTLLQLAEDEGDSF
PLAASALKQDFYMDDFIRSVATISQAIQLRKEMDELLRRGGFPLRKWCSNFSEVLEGVPSENLANPSSQTFAPDEAIKAL
GISWEPASDQFRFNVGPFSVDAPITKSKILSVIAQLYDPLGLIAPVIVRAKILMQLLWTISIDWNEEVPVEIRTIWESYV
EDLTLLSDFRISRLAFDVGEVQFHCFADASESAYGTCVYARTLKPNGEVKVVLLASKSRVAPLKKRSIPRLELCAAQLGA
QLSSRVVAALKMETTPVFYWTDSTVVLHWLRSPPQTWKTFVSNRVADIHTLTNSSRWFHVPGVSNPADLVSRGMPVPQFL
GSREWIHGPDWLGEGEENWPKLNLSQTKLADVECERKTTTLFARSPPPINPLFARSSSFDRLLRTTAYCLRFCHYTRKGP
KQPTIALTPIEIETARDRLVKIVQTECFKPELTLLRKGKPVANNSSLKLLNPFLDSVGIIRVGGRLKLSTESYTTKHQIL
LPGFHKFTRLLLMSYHCKLIHGGISLTLGVVRNEYWPTNGRRAVRSVIRTCYRCTRANPRPLQQPVGQLPLARVTPSRPF
ASTGIDYCGPVFVKPAYRKSAPTKAYIALFVCFSTKAVHIELVGDLSTASFLSALQRFIARRGKPEHVYSDNATNFVGAK
NELHALYRMLSNTDEINRISSALATDGIQWHMIPPRAPNFGGLWEAGVKVAKKHLLRQLGSSPLLYEDLVTILVIIEGAM
NSRPLAPLSEDPNDFQAITPSHFLIGSSLQALPYPDMKDVPVNRLRNRYDVIQQKQQLFWYHWRTEYLKELQRLSASNPQ
RVVLKIGQVMILQDSCLPPVRWPLVRVVELHPGQDGVTRVVTIRTPTGATMKRAVTKLCPLPMTDEEEMIYTDEATDHSS
PGIVVEDSSKQQ
>BEL-87_CQ#LTR/Pao 84-5381 via tfasty with BEL-38_CQ, 3 frameshifts and 1 stopcodon. [Culex quinquefasciatus]
MLSTPVKDPDSSLLEVFSTPIGELQQSRRKMAEEFDILVKQRGAVKGKITRIKNVLGQHTQNQTIPDEFLLHTQLKTIDA
TYEEFNHFQNKIYAAKPAEADDQEKKYVEFEADYNFVRAKVCQLLRGVKQEPDPQPPAAAQPVRVQATSSLHTPLPSFDG
KPENWYKFKAIFTDVMSKHPGESEATKLYHLDKCLVGEAVGSIDQQTINDSDFAAAWAELTEQYENKRRIVDIHVGGLLN
LKPMTSESGKQLRELVDGCKRHVSALNFHEFPMAGLADILVVNILASKLDIETRKVWETSIEHGEIPNYADTVKFLTTRS
QVLERIELADNKQKKPVAAKTTKIPALKASSLAASVEYRCAFCGQEHQNHECGEYLKLDPKERYEKAKQTGVCSNCLKKG
HITRRCSSTKTCKACKKRHHSTLHLNETGVAVEQPLARSTQNSTTATPSAGPAGTTAVTASCVIYQQRALLCTAIVNILD
DGGKALPCRVLLDCGSQVNLCTEKVASLLRLKRRSVNVDVKGVDGSTTRVTALVHINVQSRDNVYTSNLECLVINRITGT
IPAKNIDISTWPVPAGLQLADPEFYRLNMLIGVGQFFGLLKTGKVKLAESLPFLQETVFGWVVGGLADSTSWKYEVTRCN
VAVQDAELNDLVERFWESEAVPTASRMSSEETACEQCYEQTHSRDPSGRYVVMLPFRGNVSQLGDSKQHALQRFSYLEKK
LAKNADLKAAYCAFMEEYVRLGHCREIDPSKEEDGGYYLPHHAILKPSSSTTKLRTVFDASAQTSSGLSLNDTLMVGPTI
QDPLFDIALRFRTYPYVFTADISKMYRMVRVHPDHTKFQRVFWRTDPSESLKTLELLTVTYGTASAPYLATRTLKQLAQD
EGQAYPRAAKILENDFYIDDALAGADTLKELLLARDELEELLEKKGFELHKWCSNSAEFLDTIPDERREKQVSFELSGVN
EMIKTLGILWNPTSDKLLFRVALTDLTQPVSKRRIRSEVARSFDPLGLQAPVCVTAKLILRQCWRKKVSWDEQLSRCLQQ
KQLCKVLWNKFRGGLRALMEVQIERRVIVPHRVALELHAFSDASLEAYGTCVYVRNILADNTAEPTCSKSHLAPKETIPK
LELCGFRLMSRLVSRVMKALKVKFTRKVLYSDSTIVLGWLAKSPSELETYVANRVAEIHELTPRADYEYKYVRSSANPAD
LVSRGLFPEALIGNRFWFHGGFLEENDYQEDEMAIVVELPEVRVAAVVITDEQEEDYNRIFTRFSSFRKLQRVLAYVIRF
CNKTRKRSTYGDNDKYPTIPELRSSLRSIVYMVQQQRMQTDIQEVLKKQGKPNERYTGRLRSLNPWVDTYGILRVNGRIK
YANVSYEQRCPAILPAEHPVTAILVQAVHEENLHVGSSGTLSVLRQRYWILNGRNAIRARLRKCVRCFKVNPSETKLFMG
DLPSYRVTQAYPFERVGVDFAGPIYVRKGHPRKPVYCKAYVALFVCMVTKCIHIELVSNLTTDAFIAALHRFVARRGLPS
DVYSDNATNFAGASSELHELYALLTQQLTKDALQEFCLPKEIRWHFIPPRSPHIGGLWEAGVKSAKHLIKRNAGETKLTE
EEWSTLLTQIEGIFNSRPLVPxTADPGDLNVITPGHLLIGRPFNAIPEPAYDQLKPGTLTRWQHLQKMRADFWKRWSAGY
LSELQQRQKWNKQHTVVKEGDLVLLKEENVPALQWRLGRVVKVHPGQDGVTRVVTVKTAGGVYKRSTAKVAVLPLDDEAE
EKTAG
>BEL-38_DR#LTR/Pao 348-6392 [Danio rerio]
MEMAEGSESETAAFEHKRAPKPTEKALEEKLHRIIGLRRAKLSALTSNIKTLERLMNDDENLQNVHDLMQLDFAQLLAEF
NDLNVQVQDLLSEDERIADQQNWFQPKMDSVNIFRNKTENWIAAVAEKNEKNDNVEMEDDIMPHDSASQVSLNKNELKQR
CDSVTSGSVCSSVSSAYAQEESKRAALLARAASLKKKQQLVIEEMQIKAKMEELEIETALAESDAKLKVLKEYEHSEDGK
SSVRSKKRKGIHHKQLELKTEQKESSPSHSTVAKDKAKSVSSPKIHPATELNIQVPGHSDYPQADNSIIQVMQKQNDLTE
LLVRQQRQIQLPSKDIQVFRGDPLTYRSFIRSFEHTIENKTDNEKDKLYYLEQYTAGEPQEIVRSCEYMPLSRGFKEAKR
LLERHYGDELIIARAFIDKVQKWPQIKSDDGKALSAYALFLIGCRNTLEDGESMEEMDSPTNMRDVISKLPYKMKERWRS
EAYDIKERQGVRARFTHLVDFIDRQAKVVTDPFFGDILDTRNAVTAKVNQKEKFPATRGIKKSSFATNICMEERRPQDTS
SKLASPAKMVSAFEKPCMFCSKSHTLESCTEIKEQPHSIRVDFLKSKGLCFGCLTRGHLSKMCRKRIECKECSQRHPDIL
HMKEDRKVTKQVETPDKEISCAQISLSHQSCNYTESGGDNCVLSIVPVKVKSNKSDRYVETYAFLDAGSTATFCTEELRN
KLKLKGKPTQILLSTMCQDKPGEQKLVSSFILTDLEVCGLDDTKYIELPKVFTHSNIPVQNENIPKQEDIQKWPYLSEVN
IPCIDANVGLLIGANNPKAMEPWHIINSQQDGPYAVKTALGWVVNGTIKKTNNAERSKLPHHTVNRLSVVEIEKLLIQQY
NSDFPERLYEEKEEKSLEDKRFMQLMQEKTKFENGHYCVKLPLRDETVDMPNNRCVAEIRAANLKRKLQKNSELLDDYTT
FMKSIIEKGYAVRVPTEHLNRNDNKVWYIPHHGVYHPKKNKIRVVFDCTASFQGMSLNSQLLQGPNLTNTLIGVLTRFRE
EPIAVMADVESMFYQVKVPEEDTDLLRFLWWPDGNLNAPIEEYRMTVHLFGATSSPSCASYALRKTAEDRKHVASQKAVD
TVLNNFYVDDCLKSVSNEQEAINLVKEIQDLCLEGGFRLTKWVSNNRKVLLSIPEDQRASGVKDLDLDQDSLPIERALGM
QWCTDDDTFTYHIKVQEKPSSRRGILSVVNSIYDPLGFLAPLILPVKLLLRDLCKQGYGWDDEIDDKRADQWVKWLEDLS
QISNVKFKRCLKPEKFGITAEAQLHHFSDASESAYGTATYLVLTNEQNQKYCSLLMGKSRVSPLKQITIPRLELTAATIA
VKMDKILRQELQMPLQPSIFWTDSTTVLSYIENESARFKTFVANRISLIRDATTPLQWKFVRSAQNPADQATRGIKAKDF
LQAETWTKGPNFLLKSEEEWPQRPDQINQYQQKDPEIKIETKVNILNVNENDILCRLTDYYSSWFRLKRAVAWMLRLKET
LLQLCRARKQFQASIETSEKDPEKQASLLQTEMQKFKSKIKKRSLSLEDLNQAEILLIQHSQKQQFLEEIEAIKQNVTIK
RRSQLYRLDPVLQDGILRVGGRLNKAAMPNESKHPAILSKYSRISTLILSDIHQRYGHCGRNYTLSILRQKFWIPQANSA
IRKLIHKCSVCRRLNGRVGEQKMASLPEDRLLPDKPPFTNVGVDYFGPFEVKRGRSTVKRYGVLFTCLTIRAVHIEVADS
LDTDSCINALRRFISRRGQVAVMRSDNGTNFVGAERELREALKNLNHITIEQAMLQKNIKWIFNSPAASHQGGVWERQIR
TVRRILNALLKEQSISDDSLHTIMCEVESIINNRPITTTSEDPNDLEPLTPNHLLLLKTQPNMPPGVFKKEDQYMKRRWR
QVQYLADLFWSRWTHEYLPILQERSKWTKLKRNFEPGDVVLIVDSSAPRNSWIMGKVVQTLPDSSGAVRRVKLQTKTSIL
ERPVNKLCLIQEAI
>BEL-36_CQ#LTR/Pao 1171-3195 1 stopcodon. First 100 AA with distant similarity to N terminus of other BEL/Pao polyproteins, rest new. [Culex quinquefasciatus]
MASAETPQPLEYWIADLLTTQLRLVELWQCVKDGNTTTSHLAVSYKEVDELWRHFFDASVEYQSHDDFVEEEQLTFDRVR
QDFSELYFGVKAFILDSMNHAGDRNKQALDQFASRVHTQAVDRVTSIGSGGSKLCLQNRDEKQHTHTCKGVQKVQGSICR
SHQLSQTQTNGGSGSTYTQEVQGSFTHTQMVTQNASSIVLTIPPTLRHRSENAQSIGDSLRTPTHIDLPERSIHAGEESH
SATRQGSFAEIFSIGRKQVGAPLRTDFLLASLKGGNIVQGTKGFPQSALVQDQTDSPSNIFKLTGFIMVLKTLIRPKxAF
MAYLKPKMLLGRATHSTPTKNSAVKNTTPRRNSCNGQLGYPNPRRGYKVNNYSRRNANCTGQFVFAHTTSRESRCIGQLL
TEGSDKTITTTHTKAHMSQQVANHLEEWYSSVRFTGYFGLQLPGRLSDINTTTSCTQGCTGQQAVSITAGSCDTGRSTLV
PSRLGCKTNTSAGPINGAGQQFTNTTSKTRSAGQFEWYVSRDNSRFLFHLADYKRNLFLGRELPGREQICATIMWILLKQ
MPSPRTGRGGRPATGSTPRNTTNDHRQQLGTVTRKKRSRSPKLVWVCKQKVFDPRMYVLCEVDSKVELCCDVNINLNLIF
EDTNTSTVGLKIKTIHRTLILGLVFIQKWVISAGA
>BEL-43_CQ#LTR/Pao 787-3006 Similar to BEL-55_CQ (= gag?) [Culex quinquefasciatus]
MDQTMKKKLTYALQQRHLAEQKVVFVEDLLLGLYQPTLPQLTTLYDFLCAAFREYSQHHLTVLELIPIEDLAQQEAEFER
NDASFYNVATAVAEMQIEAERKPTSTLIAQRQQHLQAKVWLKQMHKAWEANQVDVPKPAPSHKLLQNQQTAPTRPIVIDS
ASGLGDKSLTIQSSDQPSAADSRSARDINANPNANARSDLLEATSCESKVVTAESESGRVQPAMVRCSDDEADQRHVCSD
SGLQRGVQIHNHSQIQICRLRIGSIPNLTTLMTVPENQPLLQAAARAPDKCEVPFSSHVTPDKIAVHKPTRNPPKLAPLD
QCKTGLPPKPLQEQQTATAEPVAIESTYKLGSDSRPSQNAEQPNSVASRLSEKVTTNPSMDTKSDFPDESSSEPTHPTGH
LKDVTTEAELDNELPAVFPSKQVPPHNSDLKPEATVKTEPLQPKVVQNSIHHGEPEQRRVHSDSGLQKMDVPESEQKPNC
FHQNGSYNMDFAMVMTVPVYKPLPQPAAKAPDKRRLPLPSRVHLDKSVVHVEEGRPPDDLVLAGEPELKCSRSTQSRSHS
EPASSEMHVVNQSRKRHKSVSNLSNLTPYKFANVHTSRRVPSIQITNRQRWCTIWFLIAQVQSQPVALNLVISMIGPQGS
FHEPPSQNEPFQVRDQLSRFQRTVYRRRKSWHSTIPPDKSRDPESAQPCKRRSNLREFHAVLPAIEDVGERREPADQSAA
IHRKRCVGRTKELRDLNGGS
>BEL-53_CQ#LTR/Pao 343-2283 Fragment (N-terminal third) [Culex quinquefasciatus]
MMLRTPKGGRKKTPKKKTPAKSDKNGDAQKSDTQEVKVVPVTPISKQLEEQRRKEEARKMEEQQKVLMRQRDAVAEKLDR
VKAAIKSSTEQLNQNLKNLHFLKLQLKTVEACYGEFNAFQNQIYGLALTPEQEKLHRACYLKFETLHNILTVQLNELIER
LSKPSVALVPAAPACAVVPQYLPPLSVPLPKFDGTYENWFSFKCMFRSVMDRYQGEAPSMKLYHLRNSLVGRVEGVIDQD
IINNNDYEAAWALLVETYEDKRVIIDKHIEALFNLPKITNDDAVAFRKLIDTCVKHIEALKNLQLPVDGLGEQMLMNLLA
ARMDKETRLAWESQWKAGELPTYAATIAYLKEKCRVLEVVEQCSVTVEKVTPHRSVAMLIAGTQKCSVCNRQHGLNGCEQ
FKGKSVNEKYSHLRKCGLCFNCLRRGHRVAACTSTNTCKICGNRHHTMLHTGGVKKQMVVPISTAPVTSKPMDKRRTRPA
RKQTLLSTAVVLVDGGSSGPHLCRALIDSGSQNHFVTERFADKLAIKKERADYQVSGLHDFKTRISSLIRATVKSRVGDF
STELELLVTPSIIDDLPPESIYITSWNLPPNIKLADPGFNSASPIDMLLGAELFWNLIRSGRITLAETMPSLRETELGWV
VGGVLKH
>BEL-51_CQ#LTR/Pao 622-3165 [Culex quinquefasciatus]
MDSTTKKKLTDAFRQRYRTERKVIFVQELLLGLYEPTLAQLTALYEFLVKSYREQSRHHLQVIGLIPDECLAAQEAEFEK
YDALFYEVATALAELQIEAEQTVPSATTPIAANRQRLQAEAWLKQMLKAWESNQVDIRDSGIETQAPESQEVVLRDCALS
KPKPLQEQAEVNRKHFVEPPKQDPVGHRVSAGILEDAVAITTKHDEIVNAEPLLPATELIRDQHNEASHSCVPWDSSPEV
TSRLVKVPSVVKHEALVLRSVHLDGKSSAVFDTSSKPAKPTNPQGHHRANQDGGFIPGKDPLVPSEVKAPDKLEQIHTTP
NSQPQTFDAHPSGRQTVRIISRTMPHSCVPISRHDPFTPTLTGADQSKPEANRCSRIVHSVTAFSTTTVDFYTTLKHWNP
AKALSQRHACLAMFVTSAPNKRFVVNAPDRTEDLAHKRSAGRQTLRHENVLQEPRPIFIQQPLKDRSKSDFNRSQALYEF
CKPRKRLLRILDLKVRNVRKRRCNSVGPPPSQLCSSPDPEDKPPDDLTTRGAPVEDQTIVCILTHPWDTGTKSPFIVTAE
SDQVQPLQQEVVQYSDDEANQRRVHSDSGPQTKVRIRKHTQNQNHRVQPRQMIVPNSVSPGNSAFHVNEQRRPEDLGVTG
ELQVKCSRSSHSWSYAERGSSNVFVVHQSRKPSHKPTSNLSNLTPYKFSNVDTSRRVPNIRITNRLSTTWLESSASPPET
RPLLIALEPSQPVEMKLVIAILRIQGSCHEPPSQDELFQVRIQPRRFQRTVDRWRRLWHPTVPPDELSRDPKSAQPSKRK
YNFRGIHAILPAIEDVGERREPADQSAAIHRKRCVGLTKELRDLNGGS
>CryptonS-3_PS_p2#DNA/Crypton 2678-3219_R via tfasty with CryptonS-19_PI_p2, 1 frameshift. [Phytophthora sojae]
MQSFSLLLLRSPRRRFASDFTSVLSKSGEFFFWCASLFTSGDLLDLPRTEMQSIVGRRTRGGPMCENQSGTSERYSLCGL
YSINNAVQTRDFLTVEDLVPIVRRLNAAAPEEEGPAPHGDEKYGAYSMQALHEALRAKGYQLRYLNSTNTFNCSSQRWFK
KIPRSSFRHLVIIGRPFGQEEGTWHCIARAAVGDKHYFIDSDELVYKPSTEDGLRHFFADLGCVYAVEPINYQQ
>CryptonS-1_PR_yr#DNA/Crypton 197-2320 CryptonS-6_PI product very similar, with errors. [Phytophthora ramorum]
MCIVSQKASQKHITRIFAIDPTCRMGLEELAPGNTKRAKATAVSAFMRFLKSEGVTEEYVRVCIERDESGKCFVSVMDKF
GMHLAFIEGKKGKPLSRNTSMQYYRQAKLWLLDQFPQHRAALEARLLKMGKTLDNFCMKRDGGGFISKAPPCTKADLKRM
LAYLYVHASCSSDYQDAALLCLLWHLFGRASDLALLRKPNVSIDAGNVLFVRFIRMKTSEEQGLSLFPGTDFTTCPMLAI
ALALMMQTAPSPDVIDNLPELPGQAAISLSPDVPLLEILNHPTDTTGLDAPSTAGAETTPTIYSHVNRVLNRIAAAAGVK
VALTSHSFRRGGAQHANGSGELTARWIFDRGAWNMSTTNKGFNYIFNTSKEDHKVSKILSGHSAEAKVSLQNLTTFDTQT
RAMIASFQRRLFTTCHHLETTRHNVNQAVLDVLTSSVLRHYPLLKDLNAEAPAVKRIEGCVADTGCSLSELLAWSSHLAS
PELTCEDTKSQSTHQQQQTVVSKQLMEPSAEQKIIDHQAAVINHFIQHVKRQDARMDALEAKLNNDPSHATRKRHKPDTD
TSDISNVKKKQRRSAVTHLRATWYAWYAHEPRMWRAPISKQQKSDAKQLVAYMKLFLEDGFVLDPTAPNYRDQVLSLGAR
AEESVLAFLGEHNISSRGSGAVLKHLRILHRAGTLNTNIGRHEQLLQTPAIQDPAPGYTQNILEQISA
>CryptonS-4_PI_yr#DNA/Crypton 208-2310  [Phytophthora infestans]
MCIRLQTPSERHITCIFAAHPSYPTRMGLDELKPGNTKRAKETAIKVFKTFVKSEDVEFDYVKQCIEQDGTGNCLVSVLD
KYGMYLAFNEGKKGKPLARNTSMQYYRQSKMWLFELFPVQRHIVEAKLLSMGKTLERFCMKRDGKVVNKAPPCSKNDLRK
MMLYLYESACSPSDYQDAALLCLMWHLFGRASDLSLVHKPNLSVDAADVFFVRFIRMKTSEEQGLSLFPDTDFVTCPLHA
IAMALITQSAPTPALIDNLPEIPIEAAVNLSPATPLLEVLNHPSEFAALDATATRANCSTKPAAAVPTIYTHVNRLLDRV
ASAAGVTEPLTSHSFRRGGAQHVNGCDGLTERWIFDRGAWNMSTTNKGFNYIFNTSRQDHMIGKALSGFATGADVELLDL
DAFDAETRLKIAGVQRLLFATCYKMNSSKYNISPKVADVLTAYLVLHYPLLKTLRSGGLAVRRLETAVVHAGAAIADLLA
WSSHLATYKKPAPAPRKEPPTPMHKETSNESKIIDHQRSVINQLMLHIKRQDERMDVIEAKQEGGTTQDTNKKRKQEPSQ
VQEKTKRRRTSVTHLHATWFAWYAQEPFGLADAPKRQRSNAKQLVAFMKLFVADDLKLDPSAVNYRDQVLALGKQAEAAV
LAFLGRLEIKSRGSTAVRKHLHDLYQRGALNDKITRLQQLRSAAAVQDPDRQDGLELVAST
>CryptonS-5_PI_pt#DNA/Crypton 2878-3869 via genewise with CryptonS-6_PS_pt, 1 intron (3359:3438) Second domain is  CHROMO domain also present at the C-terminus of retrotransposon pols and in other cryptons often present as singel exon CDS. [Phytophthora infestans]
MNYARPFSDLQKVEALALMDVQGWSTSEASRQLNITRTTLLGWVAKQDQLHARIDNGIAVNPGPTPKTCEFEKEIVNMIK
LFSDCDSKLTRSAILEDCDQRIPEFKRLSYGAQRQWLSRFLRRHNLVGHVAPHNFRQTPPETKNSEFQRVEKIVDEPAFP
ELLENPVAQSAPATAPSDIVSLLNNDDEVDDSAEFVVASQVVCETQTTSFAPGRKQMRLVVQEKDIETLDSDMWLNDVVI
TYYIREHIPAYGRIYVLDANVFGNIFSAFKKMGRNMSEAHPTVCGITASFPYEEYDQIIIPICM
>CryptonS-4_PR_yr#DNA/Crypton 287-2320  [Phytophthora ramorum]
MSLNDLAPANTKRARECAARSFLKFLEEESVSWEYLGVCMQRESASLVLEAVVDKFGMYLAFKEGRKGQLLARHSVMQYY
RQAKTWLLEQFPQHRAGIDKILLKKGQVLERYCMKRESGAFVNKAPACTKTALKQMMVYLYSTAYTSADYQDAALLCLLW
FLFGRASDLTMLRKANLSIGAGDIFFVRFIRVKTAEEQGLSLFPDDDFSTCPLLAIALALVTQSSPTASLLSQLSEPQTV
SRATLTPATPLIDLIDHPEAVIPLHQTAKKSDESKTADAAPGIHSYVNRVLDRVAKNAGVAERLTSHSFRRGGAQHANGA
GMCVQWIFDRGAWNMTATNKAFAYVFNTPAEDHRVARVLSGRDPEQRVRLLTLDCFDSDTQSKIQSVAAALFNASSGLES
PPYNVNARVIDTFMAYLLRHYPSLKSLSTNGLAIQRIEACAVEKGFSVNDLLAWSSFLSSNATATSEAKHTTTQDTTEAI
TKHPMFLQQAALIEQLIQVNQKLDTRLSIMEAKIHNKQQQAPSAMISSEDTSNNDPQAKRRRTSAATNLKDAWFSWYAQE
PRMWSSTDAATKHMRSNAKLIVAFLKLFLRDGFELDEKSPRYRDEVLKVGASAETQLLLYLREHKITARGAQNVLKSMRK
LHKSGHLNEHVRHYKQLQAAGRVVDPAPSHTTNILGLV
>CryptonF-2_PS_yr#DNA/Crypton 144-2212 via tfasty with CryptonF-1_PI_yr, 1 frameshift and 1 stopcodon. [Phytophthora sojae]
MVEKKPPLSSRSVIPQFRIAFPDLCALCRLAGMSGALPADAANANELQQAVVNVMTRHASTRPQNTIKQYKNKQDDFASW
CADRKFFDEFTGVRVEASRLYRxFCGTPRKPRKKNDDGSAVRLGYEAVDAYVKAIIDLYQFQKSIGMNQHSHPRGKALKG
LMDMLKRGENKRKVDTYADRGLGTVLDGYNLEDMRALSQFWLKQPTGVALRSRVDFLVGHALLARGESRRFIQFPDMLSL
ELTDEGPQVCSPLVVIMRKGKSNQVGRVEYGAAMRCKDVMLCPLNAVALYLFWRWHVDLEPFPSFTDRKLWYDIRLLKGK
CATRDIAYNTQLEHVKSAFTACGIDSSVWTHANRGSGAKLAELQGADENQIRRAGRWNGERMEACYLTTLPRKAMRALAG
FPTKGGGYWIDRATITPSPDLQKMVFPDLGSAEDDLQENGNREIAAGGFIGLLHVLRVVFLQDSVLLRRKFPEHCLWRDP
LFSTEAYEKFETEVTISLQSTTQPQDTRIEAAIPLVASTMKDGFQALHGKIDSLVSEVRQLKEQGLFSANKKLVISLADD
VDAPHRRGVVAAREPLDSQAIGERSTRSELRLSRSLQTVNEVWTEYTRGIAGQMSVCEAEQRFGSKWRKDPTENRFFSRR
KVFYDAIQAFAAKHQITEGAAAGELEKKRKEAGESLNRFGKIVRRVVQNS
>Crypton-2_NV_yr#DNA/Crypton 622-1767 [Nematostella vectensis]
MAREIAAKVRSIVGAAAPSGSYLLDAFGDVNRVWDRFFLPRREKGPDQLKATTLRGYCDALQRFLGYVINSAEVRPSRAE
RLALKRLQAKLPGWKTCLRKFQKWERGVRHMQDTENVLDLGQVKQVINSAAAKKCGARLDLALEEYEKGLPESPVTTQEV
IDCRNYLIACLVTFCTARASLISGLTIEGFQKYNNPKVDKHGLKQFNVTEHKTAGAHGPLTVHLDRETRDRVYAYINVFR
PLLLIAGKGVASANVHNCMGSFLKISGVRLREGQTFTPTAIRKMWATTFHQSGEDERSMEELAMLAKHRVATQQSQYICS
DRARMAASASAAISQRIKSPETHEAETPPTTTCALVPVGTINTIQWENNARQGTPSPPLSRT
>Crypton-1_NV_yr#DNA/Crypton 661-1476 [Nematostella vectensis]
MDKLRSYFDVDSPNKLQEFVWFNLCYYLGRRGREGWRGLTKTSLEFKHDDLEQKYVCIKHTEQSKNYQGGYKQKDQDYSD
LRMYGIPGSPLDPIAALEKMLEKLHPECDALFQTPLVNFDKKGSCWYKNEPLGKNSISKLMPKISQKAGLSKVYTAHSVR
ALTITSLHQAGDDAKQICAITKHNNEQSLSSYIKDSSSSQKRACSGILIRPFVSSEIIEMENSNDCKQGSLSRAGGEMNV
SFLSSTETNTSEAVMPNCHFSNCTINFNSYK
>CryptonA-1_LG_yr#DNA/Crypton 308-1744  [Lottia gigantea]
MSGSSDDDIFITQTKTCEIDDYNLETDTVLSDALNLEENYVKEAIQLPNFDLKYSDISDVETPNLPENAKTSLRFSKPLD
DSDLKNLVKSGLSIKTENKTRWAVNLFSMWKKHRNNNNSEEKGLFNLSSQELNEALSFFIAEVRKESGDNYKPNTLYEII
ISIQHYLRQNGRLIAFMDDQEYQGLRSVLNSKMKELSRLGLGINTKKSEVITIEQEEILWSKGLLGESNPQQLLDTLLFL
FGLHFALRAAQEHRNLRFGMNTQLSVKYDLEGKKYLQYIEDVSKTNQGGLDHRKVSPKMTRAYENSNPLRCPVRLYEKYI
ALRPKNGTVDAFYLRPKKMPCSDVWYCDSPVGIHTIQSTVKRLCQSAGIIGNFSNHSLRATAATRLYQAGVDEQLITEKT
GHRSNAVRAYKRTSDAQQASVSSVLHSGSKKHKLEELVDTSPTKFKQERCVNEETSDKEHKELREFKLSMPGMNLSMKF
>CryptonA-2_SK_yr#DNA/Crypton 369-1871  [Saccoglossus kowalevskii]
MIPQHEFIFIFIITNVTFXFVTENASLGEATAQTTDSDGAEAGPSRPCRFVPVTDDDVRRTIETQQNKNTAKKTLYDMRL
LGQFLKTPEINEAREIHEIPPNELETILCKFFISVRKPSGDDYEPTSLRSMLSSFERHLKRHKYMYSLISSIEFNEVRET
IKAKQKKLKKDGKGNLPRTAEAATDEEIEILWESGQFGSHSPEAIINTMWFYNTVHFGLRGNTEHRNMCWGDVSLCTDSS
GREYLEFSERQTKTRTGENPRDTRKVKPKMWDVPANPRRCPVAIFKKYLSLRPAGYTNSDDPYYIATHSRGLPRPGEQWF
RHQPIGINKIGSLMKNMATAANLPPNKRLTNHSARKHLIQKLSDQNIPPTQIMQISGHRNIQSVNAYSTISENQHREISG
ILNNQVATPNYSTSNPCQTSIPSVMQPQPQRNIASQLTSTNISHHASTLSSQSTPIFGGPISGGVFNVHVHYNIANNDSS
TIPPKRRRIYVFDSSQSSDEN
>CryptonA-1_OL_yr#DNA/Crypton 175-1526 via genewise with Crypton-1_SP_yr, 1 intron (1123:1208) [Oryzias latipes]
MSDFVVSFNLFGEFDNFDDWDAATEKERQEHQKRERRHKEVSPEELNFLEDDKDEVNTKKITKWAVNIFREFLAQKNMDI
NFENYTATTLNESLRLFYASVQSTKEGGEYSVASLRSLRAGINRHLRDVNIISDTVFKSSNAVFKAIMKRYRKSGKDTSS
HHPRIPESDLEKIRCSSALSRHAPRLVRKVWFDIQLCLARRGREGCRELTMASFSIHRDEEGAEYLSLSHNPDTKNHKTP
NDPHKQNLRGFMFARPGDPLCPIQSFKKYISKCPPDAKSFYLHPKRSVTAASEVWYSREPMGVNYLGAMLKKISEEVGLS
QIYTNHSLRSTAVGRLSDAGLESRQIMSVTGHRCESSLQAYWAPSLQERREWSNILSSRNVATSSGQGPQKLNIXPSNSN
MMDMPVSLSNFTINGNVEFNFK
>CryptonS-5_PR_yr#DNA/Crypton 440-2557  [Phytophthora ramorum]
MSLTAFVPTNTQKARTTAIAAFERMLEEEDVSVEFLHASFLLDTSGKRLAVTMDRFGFYLATNEGKKGKLARNTATSYHR
NVKLWLFDKYPHLRVPTELILLKQGKTLDKHCLKREKGGLINKAPPCTKEDLQSLIRYVYSTARVNADYQDAALACLMWH
CFGRSSDLGYIRKQHVSVSADGTFYLRLLRVKTSEEQGLTLVPDKDDFLTCPLHALAVALATQDSPCAALLGQLPELVSE
DAMPLDLGAPLHDLLSVELASLQVSVVPAAASLPVSLDASCSPATAVFTPPTSTETQTTTVSTQKKTPKRGEDSVQAYVN
RMLKRVAEPAGAAADLTSHSFRRGGAQHANGDDRLAAQWIFDRGAWDMTKTNKAFAYITNTAREDRKVARVLSGWSADDN
PAIIDIVKLDHTTQERLGRFQTLLFSSCSGLKDQRLNVSNKVLSVLTAYLIRYYPRLKKLSPTAPIVMRVDECMVAVGIQ
TADMLAWSVALNDDASQPVQESEQDTSKHTSPRIDHLLDVIDELIASNKAMAARMTIVEAALLQSKGLPETTEVEQSHEA
SNQEPKPKRRKKQATNLSSMWFEWYTRLPRVWDSTDRQKKSESRHVVAFMKLFLDQGFVLDAKTEDFKDHVLEIGRLAER
NVLEYLRGNGINAKGAGSVLREMRKLLRSGDLDERIVAYRFLLATERIQDPAPADTQDILSVTGHV
>Ginger2-1_HM#DNA/Ginger 1595-4165 via genewise with several other Ginger2s, 3 introns  (1739:1931, 2323:2518, 2792:3635) + 1 stopcodon [Hydra magnipapillata]
IIEGYANIARKAVEIFISFCPTCNLNKRQLKKAPLQPIISTGFLQRLQIDLIAMESKPDKEFRYIGHVVDHFSKFHILFP
MRNKTALETANNLKRFVLSYFGLPAILHSDNGSEFVNDVIKSLLLTWPGKTQIVNGSPRHSQSQGLVEQGNFTIERLISS
REYDSGQSNWSEWLVEIQYVMNTTYVRSIKTTPYEIVFGQKLNGQFPLEGKEVNEDDVANIIENPNQGKFKDELNVNPIR
VSLMSILLKNHFLQYSRMNINFFFFFIFFSSNLEKNAKFMVKKYNKQKKFKVAVFKEGDHVSVAIPKSLRNSTDMLRLPC
VVLHKSFGENPTYKLVTSHGVLEKRFNATHLMPYSSIVKVKSDANVSLSEAVLNEITSKVVFCRCKKACQTKHCRCFENG
IPCVSRCHKGKTKNCKNNNPHFSVQSESKSNETLDQLFSEALNYFI
>Ginger1-8_HM#DNA/Ginger 212-2685 via genewise with Ginger1-6_HM#DNA/Ginger, 2 introns (333:434, 597:817) [Hydra magnipapillata]
MSAHSYSVEDIKLYLYKGEINCSKSQRKSFLKYAKKFKLCDGKLYYVTASKNLQVLFNDNEKMLAFRDVHDSNHGAHVGL
NNTRAKLKGSFYWLGMVNDITKWVKECDKCQRMEKIRTVAPELKPIKVNGLWDFLGIDLIGPLPITKLGNKYILTITDLW
SKYIEAFPIPEKSAFYVSKCLTTLFYRFGPPKKILSDQGREFVNSLNEQLFSLFQIKHLITSAYHPQTNGQDERTNQTIK
KSLSKLSNDTQDNWDELLEAVLFGLRTCVQKSTKFTPFFLMFGREANLFSTLSLNNSDSGTNDNNIVESNALDEQIQEKL
GSYNKVVTEVNNNICHAQTKMKKYYASKQLKGWKSFTFKTGDQVLVRNYRKIGRKGSRMEHDWLGPGIISELKQTGATLT
INGKVWKKAVSLSNMKPYIVDKQVLSAELLLKEHDYCLKMTNQSYKKEDLKKRSSKKRHISELKCYDKDKKYKSVKMEIS
TSSLSDDKSILKRKRLIYPAISLDNNFYSTLSAQSIKQCIDILNNPFGWLDDTLIDIAQSFLSHQFPKVGGFQSSCIFNS
NNFGGFVSGKFVQIFNVRNSHWVLISNVTSDNGSSSVQYYDSLFTGFNKSTVPLLVHRVARSMLINEGIAFINLEVMRCQ
NQDNGNDCGLHAIANATALCHGIDPSVILWEQNSMRSHFLKCVENRKLEMFPYILLNDTKTCSISFQCDDLCPCALK
>TDD4#DNA/Ginger 615-2818 via genewise with TDD-5, 4 introns (718:826, 1062:1128, 1378:1445, 1753:1828) [Dictyostelium discoideum]
MHKGHIGRDATYGNYKTKYYNMGLYSFVSDAVDTCITKDFAPIVDTEEYSRLVYDLTSIKGEHKEKVTYDDDNEKILTKL
DDLIQYDSVQPYDTDVVYIILCIDSFTKFATGRCLTTKRTVPIYNFLALTYFGKPVKVWHCDNGREFKNKVQKEFLKLFP
GSKSAHGAPRTPTTQGMVERLNRTIKERISKLKQQDFLDGTSRSLSELLKQALYDYNNTKTRTIKMKPSQAVGIVPLFIN
VQSEQDSQSIGVSDVSKEERTAIILENLTSYQNQWNSKPPKGLKVGDTVLFLEIKKNNKILILCKIHKVIQEDTKQLYKL
EFLEDGINSLQKKGLYSGFVGGNKLVLYKQSTVDIFRTSPNIQKDIDSFTSGLYLNNDGKVIEFLVQFIKNLGKDLSNFN
LHQLVTQNDPFRVLEDALNNPSNIPPIINDNPFQHKLNNEMEQEEILPFLNNNPTAPNLMNCLRKDMNLKEIVPPIPQVQ
IIPSYTIPQSGSGIVTTVKRLRGRPHKIPIVNKPPLKSHSKPSKSPLKSPSISPSNSPFKSPFKSPSKSPFKSPSKSPSI
SPSNSPFKSPSNSPFKSPFKSPSKSPSIGKIVNVIPSKKVAKTKLTRTQKLELDLVAINRRGYGEIRK
>hAT-19B_Croc_tp#DNA/hAT Previously hAT23_Am#DNA/hAT 352-2094 Closest to hAT-32_SM [Crocodylidae]
MNTEKKSSKXAKYVSALDRVRQYPAGTLHADGGRLFCTACNVTLDVSRKTSIDRHLESEAHMKRKAAAEAEGQSKKQATV
SSLFKRTTESSLARRXAAFSLVEAFAAANIPLEKLDHPKLRDYLNQNVPNAGSFPCANKLRQDYLPAVIASHVQSTKSAL
AEYESFSIVADEATDPQDNYVLHILFVPGSWTDRDLPVFQTEPVHLTSVNFSTVXQAVVKAIVNYGLEFNKISAFLSDNA
MYMCKAFSDVLQGMLPNAVHVTCNAHILSLVSDIWRTQFPDVDSLVSSFKKAFKHCPGRKLRYRESXASQSGDSHATVSL
PPEPVLTRWNSWFNAVRYHAKHMQYYQQFVSEELEITPGTQCMLKLRDLLEQGDIQDQVKFVAENATRFMELLTWFEGRQ
AVIHHAHNKLMDLISWVEDXASQELSSCPRENQRRRDLFQAIAVKLNQYYRYDPSLPPRFRQPAASFLSAVRILDPNQVP
VLSCDPQLLKSIPGWRKEHDKERAAYVNFVKECRMPVPVFWDSVCDRFPHLYALAKRCLTIPTNSVDAERAISVYGQVFT
PQRQRMSAATAAGCCMLAFNS
>TDD-5#DNA/Ginger 634-2708 via genscan & genewise; 3 introns (701:834, 1070:1131, 1384:1453) [Dictyostelium discoideum]
MHKGHIGRDATYQKFKSMYFCTGINKEYVAIEDTEEYSRMVFDLTSLKGEHRNNDIIIESTDRFSSNWETIKNDNVKEAN
DSNIVYILICVNSFTKFATGRCLTSKKAVPIYNFLAITYKDKPIKKWHCDNGKEFKNKVFDQFREFAFPSSKAAHGAPRT
PTTQGMVERVNQEIKKLIRNFQKEDEKICKTQTISSYLELALEVYNNRKHRAIGMSPYQAIGIKPLFQTATLDNGFQVNL
EENLVSIPDISYKQRQEIILKNIEKYNNNWSSKSTKKQFKIGDTVFLLEILNKKKTLVKSKIIEIHNDDQNNKKTYRIQF
LEDGINNKQKTGMAWEYYVGPNKLVHYNQAKERTNDFQPQYNDLNDLKDSKDSNDSNDSNDLTSFTSNLYLSNHRKVVDI
LLSFTKKIGYDLTNYNLNAIAIQDDPLKVLEDSFSKINVLNNNLPNEANPCFHTFKNEKLKHECLKLLDGNVTAPTLINQ
LRKELGLLTIPQHVVQKSVTCNPSLNVARQLVPSIEHISNIHPLANALQQPPTSNTSSSFVHTLNPPDIVSQTLSNPPTI
VTSSTIIYTNHCYSSTIKSTSNCHSDTIKYTSNCHSNTFKPSR
>CryptonS-20_PI_p2#DNA/Crypton 2465-3244 Contains CHROMO domain also present at the C-terminus of retrotransposon pols. [Phytophthora infestans]
MXSLSRRLFTGAVRAFIKQHYPRVKFSDEAIRLLRLKLPQAESNSSELTSLLSEAFTALLQGGRRRIEGCHVRAWPGLPR
ESSDAAEEKAAPMGAENAREEEHLDAGSAAEQKEPTPSNNDTADSDHSDSDVIWIPPPRVAEAKLTLREALGDGDSSSSD
EETEPTETLAAGNYYVRSITNSYIRDGRRVYVTDWEATEEPADNLPPGMVAAFNRRRRAQVRRAFIEDEAGHTRERRRPS
AEAPSSRRRPLRRLRRYADA
>CryptonS-6_PS_pt#DNA/Crypton 2889-4339 1 intron (3238:3347) [Phytophthora sojae]
MSSSDQRTNAEKIEILLACERNGWDATEGGRRHGVARTTLLGWMTNKHKLFSSQADPSAKRAAPPGMAPPTLQYEAGIVE
RIKAKVANGQVVCRDDVVADAASTIPGFGERKPAAQRTQASTIDFSRNPPASSQVDFGRKIPASSQVDFGRKIPASSQVD
FGRKTQPPAKSTLAEKPKSPEVISLLNDDSEKASVPFDFGDVWDISQSEIVCETQTPCFVVGKTSMRLLVTAEDVRTIKD
QNWLNDVIMSYYIRVHLPQHGRTFVMDANVFGHIYSEFVQVERKIGLAHERCCGITATFPYEKYDHVILPICMGNHWTFA
IVQNPVGTTQNLRRCLVHVDSKGISSIEAIKKVVGGYFDAELRTKYPDNAAPAFVVRGVRTSPAQINHDDCGVFVLYFIK
RTVEAFQTGNTLLLSDIKKICTSPRSARFNAKLMRKQIIESLTQTHA
>CryptonS-5_PS_yr#DNA/Crypton 329-2448 via genewise with CryptonS-2_PS_yr, 1 intron (873:952) [Phytophthora sojae]
MSVASLVPANSQRSRATAVKSFEDFLAKKEVTLTEVHDRISKDSTGKSLFVILDKYGWFLVKKVGRQGVALSKNTVLSYF
GNVKNWLADLYPQQSQCVAKKLQKMLSTLDRYCEKRPEQGVTKQAPPCTKKDIKTIISALYMHASANSDYLDAALVALMW
YLYGRGSEAEQLEKAQLCVYPGGMIFLRFKRVKTASQQGISLFKDPNDPFTCPLHVLAVALALQPAPGTRIFPQFAAVPA
LSASDDQDDDGELGLIAQLDRELAEAPTCKTPQPRRANSAPGAQAYINRLLVTVSGLPAAKESGLTKGLTSHSFRRGGAM
HANADSRISPNWVVERGGWNMSRVSKAFSYMLNTTHEDQQVARQLSGWNPQAGARLPDLTALDGAVRARVEKLQDLLFAA
VTGFPTVSWNLDPQVLEVLMATLILHFPEMERHRLDSPYVRRIHEALGVLNIQASELLAWSITLRAAFNPPAEEKQETAA
ESSQNMIRVLEKLSQQLDELLLRQTRVEERLAVLGANAESIDKKTNTTEQQHEDVEQSQPKRARKRASKALSTVWFEWFT
AVPRMYESTTVSKAILHESRHAVAFMMLCLPSGFKLDPASPAYKAEVHAVGVEAEKKTLEYLAAQGSQAVAVGSVVKAMR
ALHKAGHLSVLLDQFRERYYEGEVVDPTPNSALPPFLRFT
>CryptonS-9_PS_yr#DNA/Crypton 310-2454 via genewise with CryptonS-19_PI_yr, 1 intron (851:919) [Phytophthora sojae]
MSTKALIPGNSQRARSTALNAFERFAVAEGFTVNAIYEFVGGDSTGDTLYIVLDKFAVYLAFKESSKGSLLSKNSVASYF
GNVKNHLLELFPALSAVSGRRLQKIASILDKYCSKRGTDFTHQAPPCTKSDLRSLSLAILKGAVSVQDYQDAALLNILWY
LLGRSSDTMCLVKNQVAVYPGGCLFITFKRMKSASYQGASIFHDPNDFSSCPIHALALATIMQSTPSEFLMDQLPRDTQE
LLPTEIGETPLRELLDARTRSPATSNSESPTPKAPAKKATVPGIHAYVNRVLQKWSGVCQTEGTNLTPGLSSHSFRRGAA
QNANSDSKISTPWILDRGGWSMSAVSKAFNYIVGTTQEDQTVGKSLAGWDLKASPRLPTLDDFDPLVLHRIRLLQDRLFS
AAKGFTERLSLRDDVVDVLTATAILHYPDMLRLRPESLYIKRVQEALSQVQATEAEIAAWSMAIHRTLQPSKNDTPRSPA
PRRVEDDELLRRQTLLLEQQAQILGGLAAEVKALNQRVQRLEHPSDVTTAPSTTAAGSLSSSSSALSDTASGAATRAHSR
AKPLATVWYEWFLPPLPSARPNRRRYHECKVAVAFMRVFLPAGYNVTGDEVTAKGRILSSGREAEANVLAFLEAENVKAK
SHGTIVKVLKRMYAQGKLDDRIRNYQRLQQEGKALEDAPVHVLEPYNNHSTT
>CryptonS-19_PI_yr#DNA/Crypton 277-2322  [Phytophthora infestans]
MSLQDLAPANSQRARQTAINAFGRFIAAEGVTMDFVAASLLGDGSGAVFVKLMDRFGVHLAFMEGRGGKPLARNSVMSYY
RHVKNWLLDTYPKHRTAIEQKLLKMGQTLERHCLKRVEGGMVKKAPACTKEDLRILMDGLYYDAASSKDYQDAALLALMW
YAFGRASDLGFVVKGNLSVSADGVVFVRLIRVKTAEEQGISLFPDRDSFITCPLHAIAMALVMQDSPCAQLLDHPHLAAG
SEESVAAPVDIPLAEALALCDDDDVPAEPPQKKRKVPVDNMKIHAYVNRVVKSASAVQAKANPTGNLTSHSFRRGGAQHA
NSDPLLSAQWIFDRGSWNMTATNKAFAYVFNTTSEDQKVARVLSGWDSSKKPPVPTLSWFDFASREQALELGNLLFQTSI
NTQDPEKKLNGRVAEVLVASLIQHFPEVLERYPMCLYATRMRECLMAVGLSRAQMLAWSSELQGKVTRKDLVENEVDEEK
LTREEKLINHQNRIIGELIAMNRSLTDRVSLLERGVSQAVASSSPSSNATQVGADCSESPAKSKTCGSKALPKGPAAIWF
EWYAKTPRLWDVCGDRQRKSAYKQTVNYMKLFLPNGFHLDPSTSTYCDQVLRVGQEAEANLLNFFQEQGTKRKSGSSALK
QLRKYYNGGKLNKLIEAYRARVATEGITDPAPRETHDLFSLK
>CryptonS-11_PS_yr#DNA/Crypton 348-2609 CryptonS-22_PI product very similar, with errors. [Phytophthora sojae]
MRRASRGLDTPAGTISQELAAEKLFEEFLNSMSLTKASLDDIHRAHSDDASLPTQNFYSLLTAFSIFIQTRKSNRARAAD
GLLAKATALGYFSQVVNLLRERYTTSLTDSKRIAKIRDKMASHIEERNLRANVQTNDAPGCTIDDLCGLVEFLVTHADVT
TGLKSVHDAALLTMMWHTFGRAIDTCFARKQQLSIAASGELFLHIARIKTSVVQGVSIYKSPERWQQCMLHAFGLLFICY
DEPSEHLFPLAPRFAESDLPGGQPYSQEEAIMYWERLQKEDEGGAEPPQKRERKRPNVASYITEIIRDTLKAMPPSASQR
ITSGMTSHSLRRGAAAYANASPKLAIQWISTRGAWLLESLTKAFAYIGTTSKEDQSVAKVLAGFQSPDLXATTPSIHDLY
XRLXEAEYGQLMTLRDEXYRHVLGFHDPRFNIALDVVDATFASLLMHLESVLEATESAGSNVLVTRYVYELNRGITAVNS
RLGSCITTRTCCEWGKHLRDHWQTTNHAQLGNAAAGGDSLLSSTLENMLTQLVSINERLGRLEDAHTRLPLGSVDAPPPA
ASAXFTTAVELSAPAPPTASTLAGSLLNWYTNHIWETVKGKKEQNKRAEAKAAINIMAILYQAPFQIPKQPSRSDVAAYQ
HWKDEIWTLALAMDSTVNARLHSFDQKKPTRKASSLRKRWRQLRTSHPDAYRTLGAQYLALKASGAVVDACTPASHQWGG
FGSGLALAYKHAQSTSNTQSTIAPGWSRTSDLEA
>EnSpm4_SB_p1#DNA/CMC-EnSpm 1338-4856 [Sorghum bicolor]
MMERSLWMYNLSRLDPSYIPEVHRFVDAAKNHALRTKTKHIYCPCYDCRNILLFEDTEVIISHLVCRGFMKDYLIWTKHG
EGSSAPYTVGDPAHIDTDGPGMPADQFFHDTPQSEHVVPNVTAGGSAGGNDGARTHVLPNDTAAEDAEFLEAMLRRHTEP
SMLLMKGMEALKKAAEEPLYDESKGCTKEYTTLRAVLKLLMAKARYGLSDAGFDAFLSIIGDMLPKENKVPANTYYAKKL
ISPLTMGVEKIHACRNHCILYRGDDYKDLDSCPKCGASRYKTNKDYREDCAASMCKAGKKRKKAQKNTQQSSKPMSKDKE
EVDYYAQKKIPALVMWYLPVVDRLRSLFANPEDAKLMSWHASDEHKNDGKLRHPADGKQWQDFNDNHRDFASEPRNVRFA
LCTDGMNPFAERSSKHSTWPVILTIYNLPPWLMQKRKYLLLTLLISGPVQPGVDMDVFLEPLMEEMKMLWEKGVQMLDEY
RKDSFTLRAIIFVTINDYPALFILSGQFKGKVGCVVCIDGTHYVSLNASKKIVYMRHRRFLSKGHKYRLKKMDKYFDXND
ERNSDAPLGNSKGHRVFKIVSNIKFVFGKKTKDGKLRKDVKSTPGATFKKKSIFFEYLPYWKDLDVRHAIDGMHVQKNVF
ESLIGTLLDIKTKTKEGLNSRFDMVQLGIKKELHPVLQENGKYHLPAASYNLNIDEKHAMCEWLKKLKVPSGFCSSIRSF
VSMKDLALTNYNSHDCHVMLTTFLPIAIRAINPVFLKMAVTRLCYFFNKITQKVIDRDELESLQEFAVETVSQFEMCFPP
SFFDIMVHLVVHLVPQIQALGPMYLHEMWTYERFMSILNGYVSTRARPEASMIEGYCTEEAIESGGPFCNNVLKDQVAIG
LPPSRHEGRLHGCGRIGRKSFIPPDYNTILEAHHSILHQLSIMEHLIEQHMDELREHNPRQTEDWVMKEHKKQLYTWLRE
QDIPYGETIEKQTIKALASGPSRQVITWQTYDISGFTFHTKSKDQKSMTQNSGVRCEAVDDKTGDIITYFGFIEDIWELD
YGTFQIPVFRCQWVEDKHVTVDNYGVRVLDLSKVGYKDDPWILANRAAQVFYAEQILSKNEKKSTDKPKHVVFPGKQQAV
GVDGVSDLEDFNQFSDMSLFVDHPMKIKNIERSIPQSSLPWVRPDGQGRIVAA
>EnSpm2_TM_p2#DNA/CMC-EnSpm 1778-3976 via tfasty with EnSpm-4_HV_p2, 8 stopcodons. [Triticum monococcum]
MQKNDLWTELKSNFTLPPEDNPENLVKEKLIKSFALKRMAELSRRWKKEMNKFVENNETPEFKGxYEKIRDHxPAFVAHK
TSEKSKNMSATNKQKGVKKKLHHRKGSGGYLVARPKWAKTENDMVDKGIEPETISWPDRCRTWFFGAGGTLDPVTGKCIW
TNDQMDIPVRKLKQYIEAAQQGKFFPDRQNDELTMALGNTEHPGRTRGTPGSISWKVGFPDAGGYKSHERRKKVQQTQMQ
ALQARVDAIEEREANRSKRTVEASPEATPLSxRRSSVASTELLQPKHALTAPASYPVDAIMESQNCHLMTQxMNLKVKPA
VGSVYPTEPGATFHYRPIPEGYARVMVDEITEGFDDLQLDHPTGEGETRLGSAMKTPCLWRKELINLPNWTPSPPPPPPA
SxGTVPPPPPPPPASDDQGPRPVPSPAHGGTSPAPARPSSRAPPSPPRQQGWKRPAAAPAAAPARRSPSPPPRKQVKKTT
ASFARPASSSTTRGGRTYRFGPSLKSPxKxPYERTPEENAKIAGTEVDDWFQGLKAKRHPPPEEKVDPVKVKRTLAALAK
PPKSPPKGNYERIIAKTWAEVDRLGSTVSDQRLKERRAAGKQIAQLGEQAKQSCPPLKVPSDIVDPRMVPGYGNFDDYLP
DDVHYDPMEVQLHRYEYGKPLDIDEKSLTTMMRRLHDWYLKIYRESRGSTLYARVKPEHDLIGVELLPIPFEEFYxFFNQ
LALDKTTITCYCL
>EnSpm6_SB_p2#DNA/CMC-EnSpm 6740-9088 [Sorghum bicolor]
MEAEEQDVQKDTAPQTTGTSSEPRSKTKKSDRARGDRGRNRFPEEVYQIIELSPSGEPLAPLEALPKFRAAIGYLVKEEF
DISWSDWSMVPQVKRTTCWNRLCTRFIFPDGTDELAKGYVMKQLAISFRGYRHDMNKKWLQKGRDPTKRYPITEAQWARF
RLMRESDDAKAKSKAASELAKRNKYHHHLGTGGYKTKIPKWRAEDDAKRREGHLALTDIVPERSANWLRARKANTESDEM
SCPDEIREVADKVLEASNLEKKGAFKSQRERDILTHALGNPEHPGRVRGFSSRISWKEGFGDEWKGMYKKRDRHKEEMKD
FFEQQAAKKFRDMMEDFFTNPDPEVMKRLAGAVSAQQMSSQAPSHMQLVPAQPLERQEMASQSKPFPSSIASTTNKDHYP
VDDIDRPWPCSLVISYGLKNQHTKQVATGNAIPGRTFHTVDMQDAYCRVEVLTVEAGYEDDFIDIPTSEGIEKLGQAINN
FIQWPRRYVRLIDPPAPPSPSIVPQPSQEAETYQQPPSPMHAPASPYIYEPPPSSPIHEMAFLQNEPEVPAKENMPEQQT
PPSKENKQTPPPPPKEKEDEQTPPPPPKQKEDDQTPPAAPASKKVKKFPIPKLISPFEPKKGKAAGTTLFLKGLGKQRTA
RLIELEPSQKKEATAQSIEAMPPSKEAPSGDVHVKQPSSQPLTLTDIRKPTIDDYVNVPSDYVPGRPMLQWTMLDKIQWP
IKRFHDWYMRAVHAGLHAIRVDIPADVFATGNEKSKAFVTFEDMHLLLNYRRLDVQLITIWCL
>EnSpm-1_TA#DNA/CMC-EnSpm 1033-4597 via tfasty with CACTA_LP_p1, 2 frameshifts and 4 stopcodons [Triticum aestivum]
MMVSGTMVDRWLRLAVQDMKENNLTEVLCLCRKCKGIVWLDPYDDGHVEAHMLMAGFMDGYTRWITxDEDDDVEDGRRGN
DDTGQDEEMIDNGGGEEAGDGGGEGVGHGGGEGAGHGGGENDMDSTQQSSSVLSSIVRDPHVQALLRKETSTERAATSTK
RAASREEAKLEQLVVDSNTPLYDGCNPEVTRLSFMLQLLKTKAKNKWSDTSLDEHLKYLKDVLPVGNLCPTSVDEAKKIV
CPLDLPHVRYHACINDCIIYRKEHTEKTSYPVCNPSRYKKAGKKCPQKVVWYLPITPRLQRYFVDPKEAKLMRxHAKRKK
PDDGDDPKLRHVKDGSKWRALNNFYRYFECDARNIMLGACTDGMNPFGNQNTNHRTWPVFVWMYNLPPWLCMKSKYIHIS
MLIQGPKQPGNNINLYLGLLQEELGTLWKTPAKTWDASKGEYFNMRAALIMTVHDYLGYGYVAGQVCHGYCGCTRCMDDM
TSQQLTSRKDGGSGKIMYTGHQRWLEQDDPWRNRGDLFNGHAEHRGSPGKRSGAEIDEVLKNWKECPASGKTMRKAPEPL
LKVWKTRSVFWDLEYWHKLDTPHCLDQMHICKNVLESLLATLMNMPDKTKDGPKARKDLQDLKIREDLHMPPRKMSYEIE
TKTEAREKKGKKINKxENCPPSCFTLSQAEINQFFKCLTGVKVSSGYCGKISRYLDTNTKRFSGMKSHDCHVMMTHILPV
ALRGIMDKHVRDTLIGLCNFFDVISRKSISVKQLRRLQEEIVVILNELEMYFPPTFFDVMVHLCVHIVDDIIDLGPSFLH
NTMLFERMNGIIKGFVRNMSRPDGSIVQGYLTQECISFYENFLYGADQPPGVSVSLPINNHDGRLEGDGHCIGRRELHVA
YSDRCRDFDRANLVVLQHLDEVDPLVALHKEIIAKKYRDRGVCRTNAEVNREHNSSFLHWFKEHIIANPPEEGSRDRLLI
YALAHGPSPNLVTYHAYDINxYTFYTEAKDMDSDDQNSGVTMECMTGSDNGATERFYGRVEEIWELDYSGLHNTTMFRVR
WAKNVERENRIFTTMTIPDAKSATVNAIAKNEPWVHAKHVTQCFFINDPCNPSRVVVRRGKRNIIGMDGVANEEDYDQYG
NPMREDDDDDEVYVKRRINTTLPKKNCTSWKRQSHNKGLNYSSTNKKGKKLTQKRNVSAEEPHVIGQMM
>EnSpm7_SB_p1#DNA/CMC-EnSpm 873-4235 [Sorghum bicolor]
MIMQIMARHWMYNADRRSNEFIEGVREFRRVAEQNKRDGFMCCPCAVCKNLKEFSNSREIHLHLFTNGFMPNYICWTKHG
ESGVMMEEGEEEQAYPDDVFAQYCDFAVEDEGDEDGDAGNSIVDDDDALGDVIRDVQRDCESAKEKAKFDQMLEDHKKLL
YLSAEEGQKKLGTTLELLQWKAENGISDKAFGKLLKIQKKMLPKPNELPTTTYEAKKIVCPLGLQIEKIHACPNDCILYR
GEHEKLDECPVCHASRYKILRDDPGDVEDEERPRKRIPAKVMWYAPIIPRLKRLFRNKEHAKLLRWHKEDRKVDNMLRHP
ADGSQWRGIDREFPEFAEDARNLRFALSTDGFNPFGDQSSSHSTWPVTLCIYNLPPWLCMKRKFIMMPVLIQGPKQPGND
IDVYLRPLVEELQLLWSKPGVRMWDEYKQEAFDLRALLFVTINDWPALSNLSGQTNKGYNACTHCFGDLQAIYLKKCRKV
VYLGHRRFLAKNHQLRKKGKHFKGTAEHRSKPGNRDGAEVFEMVKDLKVVFGKGEGSEPVPKDASGRAPMWKKKSIFWEL
PYWKHLEVRHSIDVMHLTKNLCVNLLGFMGVFGKPKDTLEAREDLKRMKERDNLHPEQTDDGRQYLRPASYTLSNEEKEI
MFECLSSIKVPSGFSSNIKRIINVPEKKFVNLKSHDCHVIMTQLLPVALRGILPPHVRLATVKLCAFLNAISQKAINPLD
LATLQNDVVQCLVSFELVFPPSFFDIMTHLLVHLVKEIHILGPVFLHNMFPLERFMGVLKKYVHQRGRPEGSIIKGYGTE
EVIEFCVDFIPDLDPIGLPESRYEGRLGGKGTLGKKTYISQGDDLFNKAHYTVLRNSIVVEPYIEEHMDFVRSENPGKNE
TWVTRHHMETFGDWLRKKCQGDKDIGDELYLLARQPAWHVLTYKGYEINGNTFYTVSQDKKSTNQNSGVRVDATDTNGDR
HTYYGRIEEIWELDYAHNFKVPLFRCQWVKMKGGVSVDKEYGMTTVDLNNIGYTNDPFVLGTKVNQVFYVKDMSTKPKRG
KQDEKNTNEPKRHIVLTGKRNIVGIEDKSDVSEDYEKDERIPPFCVAKDPSIMLAAEDTPWLRNDHNQGHYVKKKFTTVL
A
>EnSpm1_SB#DNA/CMC-EnSpm 10095-14133 via genewise with mRNA, 6 introns (10416:10508, 12929:13008, 13273:13362, 13474:13565, 13651:13693, 13829:13938) [Sorghum bicolor]
MTRTTSNAARSNEHEEHPSPREQEIHDQFSQEQFDEEVGNGVAFMLTQEESGEEQGGEAGRGETDEGSSKDDDSTSGYES
PEDPHPCEPRRKPTTDELDKDFDPNEEVPPKPPKRPRRRPARFAGHDGARERRAEATGTETTIVASAPQPEGTTSASTTK
VKRKGGVRKPNHYPNAKMVYVIDEVGEEGQILKPKEFQSKFRNAIGALVRDKLNPSIRNWHDYPEDIKDDLWKNRLLVNF
NFRIPAEKLPLVRRRAMKMMGESFRRWRNELNTEYIKKGLTPYHKYGHITPAIWALLVAEKTAPESLALSEKNSLQAKKN
IHHPRLGPGGYEGKEEMFRKMEEEAVAAGNTKVMKLKPRTKRWVFARNLEESGSSLKFAKPETEEAVSRIMKYSEDIEKG
SFTPSREKDELSLGLGNPEHPGRVRGLGKHKTWKEGFREDVEMYKKHGRNREESLATLVKTLVAKELQEQGLSTERRSQM
EPPRDLVLVGSPPNVQSSQGSNAASASVDHIRVPTRCILLIPIGRGQEMAEVATGLAHPPIPGDIWHHKPVPADYSKVEV
HTVNPEYAKHKIEHPTSEGIRELGLLMKQFILWYKKDIVLNVSSPTPSDVHLERVHLEDGEVYSPSHEDHLMHERVPASP
TAGEQGVEPGHDETPHEPQIGEPSVARAEPEHETPHVPQSPQPSTARAEPKRDETPHVPHSPKPSTARAESEHDETPHVP
PKPQHSPARPEQGHDEMAQTFQQAPPTHEELLPLVCEAREKIPIMIRSTGSKSFVDMNVSGMYKWYAHDQFKPENQGPNK
FAYRMPTDTSDYTTITKYPDVETIKWSKDCPKEYVKGKRFLPNRVLCKMPYGMRRFHDWYYLHVSRTELNVLEAVIPART
FGGPASGIAFDFSDIQSCFHLSSMSMNLIRTWCLMQANFMKSTRSTKAGYVDPMPIAQINFNYPSRWELDAPQLAAGGTL
AEKEKIRAAKIREESLKVAAWIAVCLKNLQHFETIWIPYHFNNHWIVIGVDVGMNMAWICDSADFDPHTYKDFMSILITA
FRAYVKNHKGRHDPGLGSHLRFKSLCSYLYLTHLHLQIETKFPKQRPGSLHCGYYVCAFISNTKGYRRHPELWKEEKGLK
RDVYRDDDLLEIVGDLCNFIMDHVVYYKGDYHNPQSDLGSNPLYQHLRQWDRLCLGR
>Chapaev3-1_NVi#DNA/CMC-Chapaev-3 1015-2764 via tfasty with Chapaev3-1_AA, 1 stopcodon. [Nasonia vitripennis]
NTRIRSNSYSCKQKVNSFCYVCGKYFLKKLNLRQFTDDLKLVYDECFGCKVTDSEQDWLPQLICNSCRLMFSRYKKSKTS
LKFVKPMVWSEPENVENCYFCMTKTKGFNSSNVHKIVYASVSSVVKPFIAPTEERDTDVESDLSFALTELEVSSSDEAES
EREETDESNDEYLPSGSQTKIKGEFDQKELNDLVRELGLSKEGSESLASRLKEKNLLTKGTKCSYYRNREKDFRKYFSAE
NDLVYCNNVKGLMDEFKKDVYKSEEWRLFLDSSKRSLKAVLLHNTNKYSPIPVAHSVTLKEDYKNIELILNKIQYKEHNW
LISGDLKILTIMLGQQSGFTKFPYFLCMWDSRTRKNHYVKAEWPARSTFEPRKDNIINKPLVEPSKVLLPPLHIKLGLIK
QFVKALNKEGQCFSYLGTKFAGVTDAKLKVGIFDDPQIRTxLKDKAFIDKMDDKEKAAWISFKDVVENLLENHKSENYKK
LVEDLFKNYNSLGCLMNYKLHFLHSHLDYFSQNLGDYSEEQGERFHQDIKVMEQRYQGRWDINMIADFCWTLKREHIIHG
KKRKRNPLHRSFEDKRTRKKRKS
>Chapaev3-1_AC#DNA/CMC-Chapaev-3 234-1671 via tfasty with Chapaev3-1_AA, 1 frameshift and 1 stopcodon. (may contain a 100 bp intron, but stopcodon (small r) is within conserved translated region and no proper donor site can be found) [Anolis carolinensis]
HVTETQSVKIPQEYISDHVETCSGMPEAWTLEDEEVGDDGDQMQMEADADPDFVPSTSSDPHLISQAELNDLVRDLGLSK
SQAELLGSRLQGWNLLSSGTKISKFLHCDEDLTKYFSQADSVTFCCDINGLFCALRCNHDPTEWrLFIDSSIKNHRAGRD
HMGHLVQPPAMQEKHNQSTPDRFLSLKAVLLHNGNIYPSIPVRHAVHMKESDENMQLLLNRLQYSKHNWNLCGDLKVVAI
LLGLQLGYTKYCCFLCELDSRARDLHYIGKDWPPRNKLVPGQKNVVHDPLVDPKKIFLPPLHIKLGLMKNFVKAMNKQSE
ALIYLRQMFPRISDAKIKEGVFIGPQIRDVMKDSHFDGLLQGAEHVAWTAFKNVVCNFLGSYKAPDYVQQVESLLQAYKS
MKCNMSLKIHFLHSHLDFFPDNLGAVSDEHGERFHRDIAKMEKRYQGKWNPSMLGDYCWTLIREASDSDYKRKSAAKHF
>Chapaev3-3_HM#DNA/CMC-Chapaev-3 252-1928  [Hydra magnipapillata]
MSSRSCKLCPDSFCYVCGYYISPTQAKHKIVSGTKFFTAYHAYFGMAMGDQDKSWAPHYSCGSCRSTLEGWLRGIRKSMP
FAIPRIWREPTNHHDDCFFCIVDISKYKKPKDRLTLVYPSIPSSIGPVPHSDELPVPTPPQSEEAAAYHSEVDSPDELND
DCDFREPNDSPHFPNQQELDDLVRDLGLTKSNAELLTSRLKEWNLLDPSCRTSKYRKRHETFAYFYVVSESLCYCHDVRG
LFNDIGIVHNPEEWRLFIDSSTRSLKAVLLHNGNRFPSIPVAHSVHLKEDYKNVKLLLEKINYDSYKWDVCGDFKMLAFL
LGLQGGYTKYSCFLCLWDSRAANQHFTRREWPVREHLQPGSHNVINQSLIPVEKILLPPLHIKLGLIKQFVKALNPDSAA
FQHIRQMFPKVSDAKISAGIFVGPQIKVMLACKELEDKMSAVEKEAWTAFRHVVHSFLGNNKSDNYKEIVENLIVRYADM
KCRMSIKLHYLHSHLEFFRPNLGDVSEEHGERFHQDILAMEKRYQGRWDAAMMGDYIWCLIRDDEKLHKRKPRSTVHF
>EnSpm1_PT#DNA/CMC-EnSpm 1106-4880 (3 introns) [Populus trichocarpa]
MDDRSWMYRDSPQGLRRMDYCNGVQGFINFATSIPRNFTGGGIRCPCRKCQNKKYLHPDVVMMHLLHKGFMENYLCWYAH
GEVFVRNKSMGERVVGSTSSASNVHEVANDNTNPYRNMVMDAMRMNQGNVSQCPIVEEEPNADATRFFDLLKDSDEPLWD
GCTNHSKLSAVAQVFTIKSDHGLSEAGYDKIIEWARSILPEGNRLKENFYAAKSMMKPLGLGYQKIDMCPNFCMLYYLEN
AEMTECMTCGHSRYKPRTGRGKTLVAYKKLRYFPITPRLQRLFMSPRTAEHMTWHQSHDAVDGVMVHPSDGEAWKHFNSV
HPHFSAESRNVRLGLCTDGFNPFGSFAAPYSCWPVILTVYNLPPGMCMRPEFMFLSTVIPGPSSPGRNIDVCLRPLIDEL
TQLWSSGALTYDISRKQNFLMRAALMWTINDFPAYGMLSGWSTHGKLACPYCMENNKAFTLTNGGKASFFYCHRRFLPLN
HRYRKNRKDFFVGRVEKDVASPRLSGEELHDVVSEYGDIVFGLQSGKQKFPGFGLTHNWVKRSIFWELPYWKTNLLRHNL
DVMHIEKNVFENIFNTVMDVKGKTKDNIKARLDIALFCNRKNMELVYDESRVAKPRASFVLEKNAQLLVYKWLKSLRFPD
GHASNISRLVNIEECRLYGMKSHDCHVFMQTLIPLAFRDLLPKGIWDALTEISHFFRDICSSKLNVDHIERLETNIVETL
CKLEMIFPPSFFDSMEHLPIHLPFEAKVGGPVQYRWMYPFERYLFNLKKKVKNKAHVEASICEAYIVEEISTFISYYFEP
HLRTRINRVPRHDDGGEVPSSGNLSIFSNPGRPTPKNAVRGRYLSEIEFKQAHNYVLFNCDELRPFIQQHRQYLLSNNSQ
LTESQIFQLQDEQFATWFRTHVYQMGRSAAKSLSSLSLGPERKVKCYNGYFVNGYVFHTEEYGHGRKTYNSGVCVKGSTS
SELEVDYYGRLEEVVELQYHSEQNRVFLFKCYWYDTTDRGIRVDPHYGLVEINSKARLRNVNDVFVFAKQCQQVYYTYTP
SFRKDRSRVDWLSVLKTKPRGRVEVVQDENEDTSVRDEVFQVSELVEPYRVAPSIDLEENSNFRVFDDSLVDVDAEELNV
VLSSSGQANVDEEDDIHIEDCDEGDDNSIDDEEEENSD
>CACTA_LP_p2#DNA/CMC-EnSpm 6883-8828 via tfasty with EnSpm2_OS_p2, 2 frameshifts and 4 stopcodons. [Lolium perenne]
MPNFSVKSCANFMHFFLLSSNMANNKEAGGSGSKPFWMLTDEMEVMESQPRRDGGGDDGTDPEYRADDAADDDTTDGAGK
DDTTDGAGEDDTGKPKKLRREHLPNVLSTVKQAFTKVNASGHPTTPPELVNGYATQLGCILRSTVSINTENLRHPDQANL
RTLLFKKLHKRYEFPVDCSEKRLMQNKVHNAALTKMSTALASWRNRVKKMINSGESYEKIKESNPSITEQDYVDFKIKCE
SDSTSDSSQWGKDMRKLNLGTHKLGPGGFRVAQPKWDAADEERVKNGLEPLFSQYKNKQTRNFLLARYRIDPKTKELTTT
PEVKQFEVFWxGMHPLNxFLYGCILIDESKFLNGSCMFLLxAKEVAAKSEKEASSGAGSTSSSQCAPWDNPLNRALNAHK
KRHPLSKPTSAGRVVGEGCSMKWSEYYKSGKKEKKATIDEKEVAHLKAHVAQIPTLVDEQVRQQVHHIVETQQRMQRQQV
EDQVGMMLSSIIPTLVAGLDAWYRGGKGASPGPSFMGSNSHNVEPSVSPQAAAMVSPVAPTLVAPAVPTLVAPAAPTLVS
PAAPTLVSPAAPFLQLNAPVAADNTPPGTAPTSGHSISCTPAAGGASTLAELDAITVTNPRPMTSISLPLTSxPSLTPYM
FPAELCRR
>EnSpm-2_HM_p1#DNA/CMC-EnSpm 1065-2891 (may have more exons) [Hydra magnipapillata]
MSDSDNMKWESESEIFTDTDESDNYGNEGLLVNDLAQWAVEENISHKSLKSLLHILQPHHSFLPLDPRTLLSTPRYVSYE
KLNSGGIYHHFGIASCLQKLFKNEQSFVNLSGCSQLSMQCNIDGLPIFKSIGLQLWPILGLLKQPSYTSKPFLIGLYAGY
NKPSNLIEFLNSFVVETTQLEKNGIILKDKLYQFRIHSFVCDAPARSFLKNTKLYSGYYSCDRCIQSGKYIGRMTFPEVN
SPLRTNEAFNDMLYEDHHKNNIKSPLTQLSIGMVTDFVLDYMHLVCLGVMRKLLQFWVKGPLKTRLSTQQVMKISEHQKL
LRSSIPNEFMRKPRSLTELDRWKATEFRLFLLYTGPLVLKYNLHPILFKHFLLLHVAISCLVSSKLCQNMCNFAQKLLTI
FVQHSQKLYGPEFITYNVHCLVHLPDDVSRFGALDEISAFPFENYLQSVKKLIRKPSLPLEQVIKRVSEKMLISVSDKDT
KNDYPMCKYEHNNGPICPELFNXIQYKSIKLQSYMFSLTKNNNCVFLNTSKVGILQNIIKKDLDVYIVVKLFCNTDSFYE
YPLDSKLLNTFKVSQVEDKVSIYSINDVVSKCVCLPINESEHLIISFL
>PSL#DNA/CMC-EnSpm 1927-5755 genewised with ATEnSpm6 (4 introns) (poly E removed) [Petunia]
MENLDRRGWMYERLDGRGGYNSNFITGVDNFLKFACSQQNRMSGCNVRCPCKICKNIKYWDVETVRLHLYQSGFVENYFV
WVYQGEKAMISALSSRSNFDGGSQSELGYENPYRQMVLDIAGPNFGPNIEQGSSWQSDSNVEPESSHHFESPMEEEPNPE
SQRFYDLLHAADAELYPGSSLSQLAVVSRMLSIKMENTLSQRGYNQMMQLLKEALPEDNKVLDSYYQTKKLVQSLGLPVE
KIDCCNSGCMLYWGDDEDLTSCKFCGHDRYKRRVGTRKRKSVPYKKMYYFPLIPRLQRLYASHATASDMRWHHEHIQEEG
VMRHPSDSEAWKHFNETHSFFANEPRNIRLGLCTDGFQPFGQSGRKYSSWPVILTPYNLPPWMCMKEAYMFLTIIVPGPN
NPKQKIDVYLQPLIKELTLLWETGVEAFDISKKQNFQLRAALMWTISDFPAYSMLSGWSTAGNKACPYCMEEAQSFRLRH
GRKTSWFDSHRMFLDQNHPFRRDRKNFLKGQTVRMPPPPLRTGEEILNQIIELGLRKVTELDAEEVNGRICRNCGWKKRS
IFWDLPYWNSNMIRHNLDVMHIEKNVFDNVFNTVLNDEKTKDNAKSRLDMAIYCDRPQLTKDAHGNYPKAAYTVKKQERK
ILFDWVKGLKFPDGYVSNLGRTLDTNSHRLYGMKSHDCHVFMQRLMPIAFRELLPCNVWQALTELSLFFKNLTSTTLRVV
DMERLEADIPQILCKLERIFPPGFFDSMEHLPVHLPYEARIAGPVQYRWMYPFERYLGTLKRMIGNKASVEGSICEAYLM
AESTQLFSHYFEPHVMTRSQNVDRNNDGGVGEDLEGNLSIFTHPGRLWGEERKRDLSLQEIKAAQTYILLNCEEVEPFVS
MFVQRLQQEIPNLSQDQIDESLELNFSNWFKDYVRYNHIENEFLRSLAHGPLLGVKCHSMYFVNGYKFHTESHGSARSTM
NSGVCISDPNVGDYFGRIQEIIQVEYREEPLKQVVLFKCEWFDPTIDIGVKTHSQYKLVDVNHRRRFKKYEPFILAMQAT
QVCYVPYPSMKKDNDDWVAVLKVKPRNVIDLPKEEAAAIPESNLPFQVEEVEAHEIDMNVVIDEDILLHDPNGGTIEIVE
PIGDGLL
>OShooter_p2#DNA/CMC-EnSpm 7352-7897 [Oryza sativa]
MEDLLSLSRGPLKNITCFTGYDMNGFRYRTERRDSRRCTQNSGVMVLGDDVEYYGVLTEILEIQYLGGRRVPLFRCNWVD
VFNKDRGIRIDKYGLTSVNLQRLLQTDEPFVLASQAAQVFFVKDNQIKGWHLIEKMQPRDTYQVPAGESDDESTEVEQDD
GNEEDILDDSPSASLKRKRKP
>Transib1_DP#DNA/CMC-Transib 739-2619 [Drosophila pseudoobscura]
MRTFRKKTFTENKEETHSLQLGRPRLTYDEAGPRLKRKLAADVAIGYKNDTSLLIHAATMSARKSYANATAFLLKNVGTS
ESEATEAKGKLDIVEPILLTTNDALEFLLENSLSKRLYNEIRQISKQHNFDIYPSYQNVQEAKLQLRPAGITATETMAKV
ALQHLLNHTASRIILLQEELFANFENVSSITLIASYGYDGSTGQSMYKKRFETKEPDTFDQSLFVTTLIPLKLIDEAGTI
FWNNRTPQSVRFCRPLKMEFAKETKDHILAEKNDLDTQMKNLTPCVVTISNEKKITVSYDLHMTLIDGKVLNVLTGTKSC
QLCSICGAGPKQFMETYDTNSFKPNPRRLHYGISPLHAWLRIFELLLKISYRMGFKKWQVRNENDKLEMIAKKKKHIQRR
LWQEMGLHVDKPKQNGSGNSNDGNTARKAFSNTKLFASILELDLELLESLHTILIAINCEFAIDALKFQNFSDKTIRSYM
LHYSWYPMSPTLHKILVHGSQIITASVMPVGCLGENASEAKNKFYKRDRLMHARHNSRVNNMMDVFQRSMDSSDPLISSI
SIKKRAARHKKQTLPRDVIELLETPHCNFPKNIQPLANDYSFDYDSNESELEDINPYSFELSVQNN
>Transib-5_HM#DNA/CMC-Transib 637-2628  [Hydra magnipapillata]
MKIIDLIPKVREICITNKDIVSLLYEEILISEGLDGEKVHSEKLTEKIRILVIKLKAKWIAVNKTYDRLLMKEKKWLQTE
IQIVMKADNVSRKEFSGGRPKKDWKDLGERSKRTRVVGLSAHDPEVLALAAVKSAKSSGDLQDFAYVVKESIQKASEIRK
SMDSKEPIMMSEKEALSLKVNCDLSDDQYQMIRNSSIKHNANIYPTLHALFKEKSNCYPEDLVVTETSAESKLQSMVNHT
LKKVIVLSEDNLKTLDPDQNVLNGRFILKAGFDGASSQSLYKQRYDNTDIEEAKKNEESLFQTAIVPLKLSVESKTIWEN
KKPNSSHFCRPLRLQYKKETTELSKSEEKHIRDQMADLEDYVEIITLADGRKVSINIKSHVELTMFDGKVVNALTNTKSS
ASCNICGAKPSEMNKLDLVKIKPVNDDAMSLGLSSLHCWIKCFEYILHLGYRLEMTIPRTDVRLAEDKVLVQARKKTIQD
RFRAELSLLVDVPKTGFGNTNDGNTARRAFMHGEAFADITGVQVELILRVRTVLQAVCSGYDLDIDRFSQYCNETLAFIV
NNYDWYRMPPTLHKLLVHGPAIAENLELPIGYYSEEAQEAQNKVIRHARLNHSCKISRLNVMKNQFQYLLIRTDPEISSI
NFIKHKSSNGNPLSEQVLNLLKH
>Transib4#DNA/CMC-Transib 527-2219 via tfasty with Transib1, 4 frameshifts and 1 stopcodon. (130 AA internal deletion) [Drosophila fruit fly genus]
ETFYVVGVYEFSHAVLLDVWSNNKRDADAVNSYILENIEENFETKEQKITISKKVNQFIAYANKHLRKCNRMLDRFKRNH
LLWLASKIVVVIHKPEMTLCKPGRKQLTYEDAGPQLKKKLANxLAAEQGHSTPLLVHAASISAKKTKQAETAFVLKKKGI
SSENIHDIKKKIETNHPIKISADNALALLIENGFTKQQYTNIKALNKQQGCDIFPPYSKVAEAKLKCRPSEHKISEKRPG
VSXQDLLDHTAGHILLIQEXVFCVHPDPTNCTFIVSYGFDGSTDQSTYKQRFLSNECIALDQFLFVTTIIPLKLIDEINN
RVIWIHSSPQSVRFCRPLKIEFIKESAALILKEKQILDAAIKNLRPYSYTSKNQIIAYTADQRSFSNSKIFSSVLNLDYK
IIYNFYIILISISCEHTIDAEKFKSLYPLFLSPTIHKILVHGYQIINQFIVPVGVLGENASEARNKLYKSDRKSHARKCS
RLANITDVFNRAVDSSDPLLSSLCLRDRSKFGKKKLLPKEVIDILQNPDAELYKSSYHSNNKEEEVEVEDEFNCLNIFLE
EEVEE
>EnSpm_MT#DNA/CMC-EnSpm 1877-5435 (1 frameshift) [Medicago truncatula]
MEYYEYYRRWMYDRTFPGRTGLKPQFVEGVDGFISWAWEQEICRDEGGIRCPCLKCRCRHIITDPGDVKKHLKKVGFMPN
YWVWTYNGEMFQNFGXGVNAQASTSHGGTNVETNVEYNEDVNTXQFNMMDDMVADALGVELSYGEDVEDDEEEQPPNEKA
QRFYRLLSESNTPLYEGSSHSKLSMCVWLLSHKSNYLNPDDGMDDITKMLKAVTPFKDNLPMNYHAAKRLVMKLGLSVKK
IDCCRNGCMLFYDNEFGINDGXLEECKFCQSPRYGISKQKRVAVKSMFYLPIIPRLQRLFASMKTASQMTWHHSNGIXGV
MRHPSDGEAWKHFDRVHPDFAADPRNVRLGLCSDGFQPYVQSSAKPYSCWPIIVTPYNLPPEMCMTKPYLFLSCIVPGPD
NPKAGIDVFLQPLIDDLKRLWVGELTYDISRKQNFKLRAALMWTINDFPAYGMLSGWSTHGRFACPHCMENTKAFTLESG
GKSSWFDCHRPFLPHNHPFRRLKNGFKKDERVFVGPPPKITSEEVWTRVCDYPKVTDYGRAVPIPRYGVDHHWTKRSIFW
DLPYWKDNLLRHNLDVMHIEKNVFDNIFNTVMDVKGKTKDNEKARKDLQIYCKRKDLELKPQPNGKLLKPKANYNLSAQE
AKLVCQWLKDLRMPDGYSSNIGRCADVNTGRLHGMKSHDSHIFMENFIPIAFSSLPKHVLDPLIEISQFFKNLCASTLRV
DELEKMEKNMPIIICQLEQIFPPGFFDSMEHLPVHLAYEAILGGPVQYRWMYPFERFMGDSKRAVKNLAKVEGSIVAIYT
AKETTYFIGHYFVDRLLTPSNTRNEVQVNDXRDPSTLSVFNLXGRHAGKVLQYWMVDQKEMRSAHVHVLINCAEVKPYLE
xxIYSYPFLLVHTTISFNAVNNFVLNLLFFREFIAFYAEFGEGSTVGSIHEYFPAWFKQRVYNAEPTDEVIRLRQLSQGP
LQCANEFHTYFVNGYKFHTHSWTEGKKTINSGVYVKGVTDGGEDDFYGVIKHIYELSYNDNKVVLFYCDWFDPSPRWTKI
NKLCNTVDIRVDKKYKEYDPFIMAHNVRQVYYVPYPPTLPRKRGWSVAIKTKPRGRIETEEXNEEVAYQADDMTHVNEII
EVDQVTSWQDSQVEGDQVDPSILEMRNEVEDENEDVVDDNNEGDXQDNQVDDGDVDEYNYASDNNT
>EnSpm-10_OS_p1#DNA/CMC-EnSpm 5838-8414 (may have more exons) [Oryza sativa]
MEEDRSWMYNGRRKRNQVSADWILKTTDFLDRAFSRDTSADGVMCPFVTCEHTKTQAHTKQWDTMMKHLFKHGFRPEYTV
WVYHGESDSDPTRDDVLRQRTFDEDGDAEVHRMDDMVDDVRDAHISVEEEEPEPIARAFYEMLTASNQSLHAHTEVSQLD
AITRLLAVKSQFSISIAGFDALLNVFGALLPQGHKLPLNLYEAKKFLSALTMPYEKIDVCPKYCMLFREENSEKTHCDKC
GESRYVEVQNSYGEKKQLNIPMKVLRYIPFIPRLQRLYMSEPQAKQMTWHKYGHRYHPNKIVHTADAEAWKQFDRDFSEF
ASDARNVRIAIATDGFNPFGMGAASYTCWPVFVIPLNLPPGVCMQKHNMFLSLIIPGPDYPGKKISMYMEPLVDDLLHAW
EHGVQTYDRATKQNFNMRVSYLFSFHDLPAYGIFCGWCVHGKMPCPVCMEVLKGRRLKFGGKYSFFDCHRQFLPHGHIFR
NDPNSFLANTTVTTEPPHRFKTEEVHVRLQRLQPAANGEGFEGYGEDHNWTHIPGLWRLPYFHKLVLPHNIDVMHNEKNV
AEAIFNTCFDIPEKTKDNVKARLDQAILCNRPDLNMIRRQTSGQWLKPRADFCLNRTQKKEILEWFQTLKFPDGYGSNLR
RGVNFKKMRINGLKSHDYHIMMERLLPVMFRGYFQPYLWEVIAELSFFYRKLCAKEVDPIELESMELQVPVLLCKLEMIF
PSGFFNPMQHLILHLPYEARMGGPVQYRWMYPGERDQKDLKSKVKNRARVEASIAEAYILDEIANFTTIYFADQVYTVHN
PVPRYNVTVESRECSLSLFSIKGDSTSRGVTRHLTEVEWEAAMLYVLTNLPEVDDYVG
>EnSpm-3_BF#DNA/CMC-EnSpm 5708-8941 [Branchiostoma floridae]
MALKITCGFRRVGARESKLLGLTEEEKQTRRFGQANLEEQYRTYTDIFVGEKENELNFKDFCDSVKHIGKVLNTWTQNRR
DEKAKFLEYFSVDKWQKLSAAAKAKHAAVGPCKECQREHGAFWELYNKQIKSANVRCVLSPISTPLNVSKLGQNQKIDQS
SKRKLYREFKADVEAAQRLNNKDVEVAYATDESLRSRRKRRLAEEFESKDEAEQRTKKRKLLEELGQRKPRNKLGNFENW
ATFDGERLKQEVDSYEDGENVNWTELARKYEIKTPDGKVPPNAGQLLKLWLKKQHIDTERFNKLSSAVIRRARIKLNRGT
GVTLPRQRTERQISKQLCVMINDGEIPIGEFVVARKYKKFFLNRQTNKIETKVVTTEGRKHSLLTIRKKLLTAQQPFLRD
AADYNSMTEDQLKQRLVDLGEDVPSDKASMIDRLSSIERTRHLMYWEDGATLANRGYIAYMVATVYDSAIYLTDTEYYEK
FKVRLSVQSKVEQPELYLIARSGSSDAEQLLYTQTRRDDLPSLQIQVQAPDGRQYKDILRFFKGDNPARQFEVGEQKGGF
HPCLCPIDIRCVHRFSACSRTDEPAPTIEDRRQFLLEGPVTSRKASSMEPEPFGQLTKEEMKDEVTSRGSVSYAEAENMS
KKDVQQEMKGMLHGMKRAPTLLLPDLTQTTAQLNIQQLEAPASESMHDLFNHSKNILNELPAHVPKEVKETIQRVKDIIL
GGKEIVRASDMRYAIIMLNKELEKQQKASNEVKQLLYTLAEMQRLCYLAADNRNMVNIYRMSNIMFHHHVMLKEVFPGNP
KVLTHRKLWGMYIHSLRDHTPVIYRIAAISSLMAENEERQFANFKRVTKSSACYGTEGHVITNYMIRSHCSEKVGASENR
GCVENKISQVAKLLPQERTKIPVALLKKYPREAQAWCERVCDFFHRGYGIHWHVEGEHVILHDAPSQDPPFHPAGPTMRH
FRSTSIKQMHNLLRDDFQQCIEEEIPMPVSTLWLYNGQTLVKKVKTPFLDTGHDFSQHVPYMSETVQETEDEEEREEMPV
EQDPACDEPEEEEEVVIRMDPLDPDPELDEFEDGGSGT
>EnSpm-12_HM#DNA/CMC-EnSpm 179-2134 [Hydra magnipapillata]
MNSTERVRKHRQRNAFLQSAIEIITTSSASENDIVSVQGSNPHEVSPDDYQHDTSELNETLSDDYYSTNIMEDSDSDSVI
SVELDEDPSDKNVEDDLQAELAVWSSSSMCKRDSLNKLLAILRKNGHPELPKDSRTLLNTPRSIASYSKCGGDFFHLGIE
SGIKRTLDSTVITNENTQNIALIVGIDGIPLFKSSSVELWPILCRFNSLKPFIVSVYTGNKKPSFINDFLKDFLVEYQLL
NTVGFLYENHRYTVSIKAFVCDAPARAFIKCIKSHTGYYSCERCIIKGAWHDGRVVFQKNNCSARNDLDFSLLKYQHEND
EHQNAKSPLIDYNLPCVSGFVLDYMHLVCLGVMKXILNFLTDGPRLCKLSIQQINXVSESMVSLNNEMPSEFARQPRSLE
YVKRWKATEFREFLLYSGLVVLRGVVKKEVYTHFLYLSIAIRIMLSSNAEYRNSLLEYAHHLLVYFVSTTKNIYGNTFNT
YNVHNLIHLQDDVAGYQLPLDAISAFAFENHLQILKKLVRNATNPVSQIIKRAHELESCGAMYSEKFLYTKISIKHKDSW
FLLKCGKYANIKEINDNNIYMCETYRKDSMESFFLEPCDSKNFNIALLRERTLNLTRTLIERDDILYKVVVMPYGDNGLV
FIPLVHNVNWK
>EnSpm-21_HMa#DNA/CMC-EnSpm 910-4416 via genewise with EnSpm-18_HMa, 1 intron (1548:1910) [Hydra magnipapillata]
MSIIDPTTCGFAKVVAYELVLSRVTLKEQIDSYGLIFNKQKEDFMVSSDIHRRNFPKVKNQIQSIGKSSKTNKHTILESF
SSKSWYKLGEAEKSQHSFSNCKGCIKSKIYKHLLTLFPVKSITYGRKAALALYQSGEEKSKMVADAKTLLKKADNEFKMK
YPFTPIECIVPSIPKSSLVAKPSKSVVMAQKNSYAKSFKSSIDTHLQETAVDRLFGTEMSFSKHKKLRLSQSFETFEHAK
QRASVKQNKNRKNHIGSYSWLDSDCFAEVENYEIGTYINFTKLSQKFQMKNKAGALPSNSGQVVKEFLEKKGIDLKKFDY
KGKGKTIIRRSKRRINGTKVSMPTEPTNKKIKQNMKTKISSGDYTIGELVTPQSFEILKINNDNSYEKTFTELYGRKIPL
IEIRKKFAEQHKKFFRLHSTDEFQNMSREDIIFELTRINEFSYSMETTTELLLQKLKSFSCKRHLQLWHDGSTINNHAHV
LFMVNCLYDPAIYLKDDEYFTKYKEQVNVQSIVEKPELYILACCQSSDAQLLYTKTRNEDNRLLKYPISVDGILLFDEMR
FFHGDAPACQLEIGQQKGGEYPCWLCPINIHQSANITHSFIQTVFSVQDRIDKILSTNCSKEKIRQNRNKLYKNLKKYEI
VTELHERGKHFYCKENKSSLQIKLDEEMHGIQRLPALLYQENNTSMKDLNLDRYEVLPCEPLHDIKGHISNLYDEIGNHL
HKDEKKYFKDMVTLSFDNKECKRGVDYRKSLLKLVMVLKGKIDQLAFELLSTMVNIQSILYSNESTRSIENICFLHNQSF
LHLIYLKELVNDKPRSITMRVLYGKYLHALSVHGPQMLRIVSGISSNTEEEERTFNELKTINRSTTNHHNDHVIVNSLLR
LQSRHLFNKGYSNHQEDQHQVSKGALHFERKKSHIPFWIIKKYPWAWQSHLERISDYICEHYIWWYETDEGITFRDDSRP
TDSLLQLRHFRSSSIKLETTNLLECWKKCIINKQVIPAEKIKIEDDIGNVFVIYPNSLQEFKGEEPLIKTSNIGVSIVED
VVNCLPVK
>EnSpm-19_HMa#DNA/CMC-EnSpm 1009-4984 via genewise with EnSpm-18_HMa, 4 introns (1647:1757, 1876:1990, 2142:2461, 2616:2889) [Hydra magnipapillata]
MSILDPFTCGFAKSIVFLILKKKRAEKKRLNENIILYKHKIRQQQYDEYNTFFNLKQFNIDYIQFSKNFPKIILHMKILG
KNKLVKNNVMKTFSKKKWLNLSQEIKENHSLVNCLECRNDLILKKSLGLYPIKGLIQKIKAKKGGLLKKTIGFRNKIINK
NDQQYLINKSKTFSNNAKVQKGNSLFVNISKQKLVLSVKKDIEKQLLETSVERSFAVPVSLRKRSKLRLHGGFESKSNAI
LRTSINRQYIEKGLMIKKDHLGSRFGYRWEKKKCLLYLENLPSNQNINFTSLAIKYNLHNKEGKIPGNAGQVIKELLKEN
GVDVAKFNLKSISTFNQTENTNNCNSKPRRRKRSISIPMEVSNKVLKDKLEQDIEKGKYRIGKLIVPKTFTKTVCKNNSL
VTEEFLVSGRKLSIDDIRADMYENHKAFMRLTTDQEYLALSRETIIDGLKRIDEFNDDYENRSVLHLRETFKKFERTRHL
MFWHDGSSLSNHGHILMLISVMYDKAIFFNNDEYYEKYGEKINIQAIVEKPFLYILARCPSNDEQLEYTNLRIEDIISLK
YPIIVNNDIEIFDVLRIFKGDHPASQFESGQNKGGNFPCHGCSLFAPKAKSYSYSFRCKTLSLKQRVEKIFQTNLSKDNF
KHGKIYLYKNLSKSDIISELLGRNLQFKVNSNKKNLKTILDEELHGIQRLPALMCTKSFDCFDSLNLAEYEILVNEPLHD
VSNHIKNLQKEIPFHLEKRLKPIVQQIISDSFDSELKNSGDHRKSLLVITKWFQEHQPFHFICTLLTQLSEIQEILYLGD
DFRKPIVILRLLITTFLHSIFTNIYLEGKISSMSERKYFGIYYHSLIRHSGEQFRLFSGRSCNSEKEEAFFHPLKEFTNL
TSNRNPDNIILNNIIRIQSKKLLNNEENNSQLKESKLYHLYSSIKQSYKNHVIHFTIIEQYPWEYQSMLENIADYLVEGK
WWSETNNGVVFFDLENDSLKKLTHFRSTSITKNNKHIASCWIKCLEDLYKIPALKIMINGNIVKLGNLKYSNHVSLERIE
SSTEIPIEIIKD
>HAT-75_HM#DNA/hAT-Charlie 156-2063   [Hydra magnipapillata]
MDKVKVNTSLLRKIRRKRKIKDENRIFHNDWTEKYAFIERNNKPMCLICNIELAHNKTCNVKRHYETKHKQFSEEYPLSS
NYRKNKIELLKTKNKNQQLNISSYSQESINTTEASFVIAWNIARGKHPYTDGEFVKQNISDVLSVLDPSNSKIQRLVSQI
PISRHTTERRISEISIDVEQQLLNDLKNCEAFSLAVDESTDIQDKPQMAVFVRYVTSDVIVKEELLDLVELKDTTRGVDI
KEALDKALLKANVPINKLVSVATDGASAMAGKHLGLIGLLKSDPKYPEFIPIHCVVHREHLAAKHFNFPIVFKSVLKIVN
YIRANAKNHRQFRNFINELDLADEPSDVSFFCSVRWLSSSDVFYRFVELLEPIKCFLIEKEKTFEILDDINFVQDLLFLT
DIMQHLKSLNLFLQGKEKNISDLAQTIFSFQKKIILFQKDLSLKKFNHFPQMKKMITSNPSIQYDDDKIESYLDKLKDLQ
KDFQKRFKDLHELKSSLGFIVNPFLINIISNGCPIPEKMLEDISQFEMELLDLQEDQNLLMLHKTITFMEFWKIVPEVKY
PQLKKIAIKFISIFGSTYTCESLFSTMKFVKSKYRANLTNEHLSELLRTATTSLKPDFKKLTSKVMSISLIKVKN
>HAT-16_SM#DNA/hAT-Charlie 313-2187 [Schmidtea mediterranea]
MDKFLRKECSTLSTNDDEPSTSNDVKRPKIVKRQYNAEYIQYGFSWCGEEAAPKPECVICREQLSNEAMVPSKLIRHLKS
KHPNCANKDRQYFQRLLNQNLKQRQFMRSSVTISDKALEASYHVAKLIARQKKPHTIGETLIKPACMEIIRLMFGPNEIN
EVSKVSLSADTVKRRIDDMSSDILKTLITKLKMTENFSLQIDESTDIKNQAQLICIVRFVDEESIKEHYLFCKELPERTT
GEEIFRVTDEFFKTYGIQWINCMSVCTDGAAAMMGYKKGFVSCVKRQNPAIQITHCCIHREALMVKNLPSELLATMNECI
SIINLIKSKALNSRIFGILCAEMGSEYQSLLLHTEVRWLSRGKVLARLFELREEVSNFLLNQNVPELHKLLQDNHWMTKL
AYMADIFEHLNELNKKMQGRNENLLTCSDKLNGFKQKLDLWQSELQQGSLEMYQRTNQTIGRIAQAGKNKQIILRLAEQH
LTLLQQKFNQYFHIINTDQYDWIRNPFSANAENSTVALSLQIRDEFFDLRNDGTLKIKFSDVPLDTFWIAVKEEYPRISE
KAIEVLLPFSTTYICEESFSTLVLIKNDKRSCLKGLDQELRVALSNIEPNIKLLCSLKQAQVSH
>OposCharlie2_tp#DNA/hAT-Charlie 744-2681 hAT-1_AC in the lizard Anolis carolinensis encodes a 96% identical protein.  [Monodelphis]
MENPKNKKTRLSKGSGSSSSRPFQETWTEMYGIIEKNGRSFCVLCTETVVSRTWNINRHFETNHSQLLKKSEDERKEYIS
RQLHLYKSQSNSILKFVKGSTNLTSASLSIAHSIAQHGKALSEGEFIKETLLRCAPVLFHDMQNKDAIIKRISELPLSRN
IIKDQIMRLNTNVQHQLKRDISNCKYFSISLDETTDVTSHAQLAIIGRYSDGLTMREELIKLVSVPTSTSGSEICKVVIQ
TFRDLSIDISKVVSVTTDGAPNMVGKKVGFVKLFTEAIGHPIVPFHCIIHQEALCAKAGFTDLNDLMSVVTKIVNLIAAR
PLHKREFSALLLEVDSTYSGLLMYNNVRWLSRGKVLERFVECFEEIKVFLEDKDLGNFPQLNDDKWVNTLMFFTDLSVHI
NELNLKLQGFGKSIDVMFGYIKAFESKLKIFKRDVETKTYKYFPRVTKYFEKASAAVQNEMEPLHIKYQHVLDSLLDQFS
DRFNQFRSLEQTMKIIKYPDVVVYSSLELNGFQWMQIDDLEMQLAEFQDSIWAQVFVDLRSKLENLERCRLENQEECHYE
QEIWSAWNRLPDTFSTLKNIAMALLTIFPSTYFCETLFSALNNIKTNKRNRLTDEVSSACLGLKCTKYQPSIEDLANEIQ
QQKSH
>hAT-83_HMa_tp#DNA/hAT-hAT5 875-3256 [Hydra magnipapillata]
MNKIEKKAYFKEEWLNKDIYPHFDSWLMKGKNNTQARCKLCNKIIELSNMGIQAIKSHEKGKKHVSVASNFSCFFKSSGS
KNTNSPNSVEESNLKTTDSFSTGQMKQQSLELIVSNSNKICAEIMWALHCCLNRISNNSNKNVTNLFQAMFPDSEIAKSF
QMGPNKVGYSITHGLGPYFKGLLKQQMSLSPWLVVSFDESLNKKTQTCQMDLLIRYWNEEKMQVEVRYWDSSFMGHSTSL
DLVNHFNEKISDINISKIVQVSMDGPSVNLKFHRDIQSKREEHELSKLIDIGCCSLHIIHGAFKTGVESTDWELKKTFKS
CFTLFHDSPARRSDFISITEGSVFPLSFCATRWVEDKKVADRLISIWPSIIKIVNYWESLPKSKRPSCKSYKFVVNAVKK
ELSLVKFQFFSYLASMFEPFLKLYQTDAPMLPHMNGDLVQLIKSILRMFIKSETIEATSKLTKIDLQNKENHLKPSEIDI
GFAAELSLSKLRKNDAVILKDMKEFKIQCMHILISAAEKLFKRCPLDSVIVNTSTCLLPNFYAQITPEKNRNQMKILLHH
LISLGILTASYSDKVISQFSKFISSEFAXNQDVFISYDRNNKRLDDFYFKNIDIKKYPELSSVIKLVLTLSHGQASVERG
FSVNKDVVTDNISTDGIVGRRLVRDFMLTNNLNPHSVQITSEMKVAFKSAHQKYQIMLEEEKSKNKKHAMLDQKAIILSE
IEELKSKMGFLTKTSLMLEKEFVLTVEQAEKENNLSLVSKANALKRKSEEKMKDVAKLQETLLILEEKRKKLN
>SPIN_Ml#DNA/hAT-Charlie 701-2506 [Myotis lucifugus]
MTMDRVEKNVKKRKYSEDFLQYGFTSIITAGIEKPQCVICCEVLSAESMKPNKLKRHFDSKHPSFAGKDTNYFRSKADGL
KKARLDTGGKYHKQNVAAIEASYLVALRIARAMKPHTIAEDLLLPAAKDIVRVMIGDEFVTKLSAISLSNDTVRRRIDDM
SADILDQVIQEIKSAPLPIFSIQLDESTDVANCSQLLVYVRYINDGDFKDEFLFCKPLETTTTARDVFDTVGSFLKEHKI
SWEKVCGVCTDGAPAMLGCRSGFQRLVLNESPKVIGTHCMIHRQILATKTLPQELQEVMKSVISCVNFVKASTLNSRLFS
QLCNELDAPNNALLFHTEVRWLSRGKILKRVFELRDELKTFFNQKARPQFEALFGDKSELQKIAYLVDIFAILNELNLSL
QGPNATCLDLSEKIRSFQMKLQLWQKLDENKIYMLPTLSAFFEEHDIEPDKRITMIISVKEHLHMLADEISSYFPNLPDT
PFALARSPFTVKVEDVPETAQEEFIELINNDAARTDFSTMPVTKFWIKCLQSYPVLSETVLRLLLPFPTTYLCETGFSSL
LVIKSKYRSRLVVEDDLRCALAKTAPRISDLVRKKQSQPSH
>hAT-10_AMi_tp#DNA/hAT-Charlie 482-2414 via genewise with Charlie23#DNA/hAT-Charlie, 1 intron (1843:2016), 4 frameshifts and 4 stopcodons.[Crocodylidae]
MSKKCYYQDSYVQYGFTFMLDTDGLQxSQCFLCSKVLCNGYMKPSKLKEHLQTVHPENAKDPEALLKIKXAQFETRGTLS
DHGFTPQKKPVLEASYRMALRIAKEKRLHTIAETLVKLCAMEVAELMCGKDAKXKIAQIPLPNDTIHNXIKDMSEDIRKQ
VVEQIKKSPXKIGLQLDESTDVSNCAQLLIFARYVHENDVKEEFLFCEPLKETMKAVDIMAMMNEFFNSNSLSWDLVGAI
CTDGAPAMLGKNSGFTTLIKKVNPNVISSHCILHQHALASKTLPSYLKDVLDVVxQAVNLIXARALNHCMFKTLCEEVGS
EHTVLLLHTEVHWLSRxKVLxRVFELXDLIEMFLRExGSILLQCxIDLNFxVSLAYLADVFRILNLLNISxQGGEVTILE
ADEKVKSFQEKLXLWGRRVNSSNxxSFPLFDETTLDPVHPVEPRVHESIIRQTSIITHLENLKVTTEGIIPTIQVADIWV
RSPFTVSLEQISDADLAKDELLDLRNNQKLRVDFESMKLDRFWCRLGEAYPHXTKQAYQVLVPFVATYLCELGFSVLFAI
KTKARNKLKAEHDMHVALSKTSPRIK
>hAT-3_AC#DNA/hAT-Charlie 734-2557  [Anolis carolinensis]
MAQPKKKCRQYNIEYLKYGFIESPVNNTLPMCLICQKVLSNEAMKPSRLQEHLTKIHGDKKDKDLSYFRTLKXKFIKQPT
LAKLFSTATTQDGDGLLASYKISLMIAKSGKPHTIGEELIIPAISEVIRTVLHKPASDIIKKISLSNNTVQRRIDEMAQD
VEDSLCGYLKTSRFSIQLDESTLLGNEALLLAYVRFTKEEQICQELLFAKYLQTDTKGESIFHALDEFFKEKEIPLSNIL
SVATDGAPAMVGRYRGFLAYLKKEVPNAFTVHCIIHRQHLVAKNLSARLHNSLQYVIKAINTIRSKXLNDRLFKQLCIEN
DEEFNRLLLHTEVRWLSKGACLDRFYKLFNSVLEFLKGKNDALXSNLIQSKSDIAYLTDLFQKFNESNLQLQGDELNLIK
TKSVISAFVTKLLLYKRNFGRGEFSQFPNLSGAEKKDEDILSYCEHLDALHSDFNQRFDDILKMNIPDWILDPFSSANTE
ESPQLQEELMEVTTNDELKFKFKSGYQQFWLQKEIPTAYPEIWAVIQKFLIAFPSSYLVERGFSAVTNLLTKKKRNRLQI
VNRGDLRLLLTKIEPRITKLVAAYQVHPDDFECFTFFVLPFYSEFKK
>HAT-1_XT_tp#DNA/hAT-Charlie 858-2678  [Xenopus (silurana) tropicalis]
MSRKRKVDGEGRQFNDKWENEYMFVLREGKPVCILCYETVSVMKEYNIRRHFDTKHNVKYGKYTLEEKHKIVKELKGKLQ
SQQQMFTKATAKNDAAVKASFIVAEEIARTSRCFSEGAFLKQCMLKVCEQVCPDQIQSFQNVSLSRNTIADRVQELSGNL
SSQLAEQACSYLAFSLAIDESTDNTGTAQLSIFIRATKTDLSVTEELLDVSAMHGTTTGRDIFEAVEKSINNFKLPWEKL
VGLTTDGAPSMCGEKKGLVGLMKERMQKSHCHTPLITYHCIIHQEAMCGKVLDMNDIMTTVIKTINFIRARGLNHRQFQQ
FLQEVGAEHGDVPYHTEVRWLSKSAVLKRFFELREEIALFMESKGKPLPELSDPSWLCDFAMMCDICEHLAQLNLKLQGR
KQVITKMSDMITAFQRKLQLWKSQLEQDNLAHFPVCLSISTTISGTFPCSRLATKVSRLLSEFERRFSDFRTQHSGFDIF
ANPFTVDVNNVPHHLQMEIIELQSDSGLKSRFQDVEIEDFYPLLPPDSMPELRLHAARILSMFGSTYLCEQMFSIMNLNK
NKHRSRITDDNLHAVLRVATAQEIKPNIDSLIRGKRCQTSSQKTKQ
>HAT-3_SM#DNA/hAT-Charlie 452-2259 via tfasty with Charlie12_GG_tp, 1 frameshift. [Schmidtea mediterranea]
MNSTKKRKVDSECRLFNERWTPEYFFVDCKNMLVCLICQQTVAVRKEFNVKRHYQTQHAEKFDKLNGQLRKDKIQNLTAE
LSRQQTLFTKVNKDVECVTKASFEISEIIAKKLKPFSDGEFIKECIDAAVDCLCPEKKQLFSSISLSRMTVTRRIDDMAD
NIEAVLKEKAENFDAYSICLDESTDMTDTAQLAIFVRGVDSDFNITEELLKLASMKGTTTGEDIFDEVKDALQENNLDLL
KLTGITTDGAPAMVGKKNGLIGLFQTELDKSENNTELIASHCIIHQENLCAKQLKMDHVMSVVVKTVNFIRARGLNHRQF
KEFLADLEVEYCDVIFYSEVRWLSRGKVLQRFYNLRKEILVFMEMKEKFVPELLDASWILDLAFLVDITTHLNNLNTALQ
GKNQLVNNLYDHVKAFQAKLKLWEFQFSKGDTVHFPCLTVCKKTNEDLDKIKKYTEQISILRTEFSTRFSGFAAHEHDFK
LFSDPFNFNAEAAPDSVQMELIELQCNSDLQRKHHEVSLIQFYKLYVSPVKFPSIRFHALKMVSLFPSTYICEQFFSKMK
LTKSKNRCRLTDDNLSNQLRVATSNIKANISELCHDKKCQMSH
>hAT-8_Crp_tp#DNA/hAT-Charlie 2459-4243 via tfasty with Charlie12_GG_tp, 1 stopcodon. hAT-9_AMi_tp basically identical, and probably the same element.[Crocodylidae]
MANQRKxKIDAECRVFKDSWTTDFFVIEQNGNILCLICQEKVAVCKEYNVKRHYCTKHAKKFDSLVGQIRIDRVNSLKQS
MDGQQSFFKAARQNSEAATKISFLISEAIAKRGKPLSDGEFVKDCLGIFTSEVFPDKQSMVENISLSHQTVARRVDDMAS
NIEDSLMKRLSACQFYSLGVDESTDVSDTAQLAIFVRGVTKQFHVVEELLDLCPMKGKTTGQDIFNEVKRVLLKFSLPED
KLCGLTTDGAPAMIGKHNGFVSLLVKSVPQDVITHHCIIHQEQLCAKALEMKHVMEKVVSTVNFIRSKGLNHRQFQAFLA
EIGSDHDDVIYFCQVRWLSRAATLARFWSLLDEIKTFMTNKGKDVSFMDNDAWLNDLAFLVDITKYLADLNIKLQGKDQF
VNRLYEHIQSFIHKLELFQKQLNKKNVTHFTVLLTRCAETVNHDKYSALIGRLLDEFKQRFADFREHSDELKLFADPFGT
DATDAPDTFQMELTDIQNNSALKRAFAEHDLLTFYSQYVTWHSFPNLLNHALRFIALFGSTYCCEQLFSRMKNIKTKSRS
LLTDGHLSGILRIATSSVPADIDNLCKQKQCQVSH
>hAT-7_AMi_1p#DNA/hAT-Charlie 1519-3387[Crocodylidae]
MDIFNDIYIPNITTPQKNNLDMSTSKKRKVDAECRIFNKEWTSKYFFTDVGGKAVCLICKESVAVFKEYNLNRHFETKHA
SKYEKLSAQEKAKKAEEMVAGMQKEQSFFTKASAAQDGIMRTSYVIAHKIAKKSKPFSEGEFVKECMVESAAILCPDKKK
QFENVCLSRRTIVRRVEDISENLDQQLKSKVNDFSYFALALDESCDVKDTAQLLIFIRGITENFELTEELASMQSMKDTT
TGKDLLEAVNQCVSKLGVDWKKLVSVTTDGSPNLTGKHVGLLKRIQDQVKETNPEQKIIFLHCIIHQEVLCKSVLKLSTV
VDTVTKVVNYIRARGLNHRQFVTLLEESESEHTDVLYHTNVRWLSLGNVLKRVWELRAEIGLFLNMKGKDSDFPQLNDAD
WLSDFAFAVDIMGYMNDLNSRLQGKGLFAHELHSSVKSFMTKLLLFSRQIGNKDFGHFPTLRQITVCDQNLKKYTSLLVD
LHAEFSRRFEDFRMIEKDLSLVSSPFTFDVDSAPCDLQLELIDLQCDALLAEQFKSVPLPSFYASLNEQKFPKIKAHARK
TLVLFGSTYVCEQTFSVMKVNKSNLRSSMSDDHLAAVLRIATTEMMPDFDFLVNAHQRLHSSH
>HATm-1_AA#DNA/hAT-hATm 1584-4054 GENSCAN_predicted_peptide_1|752_aa (3 small introns) [Aedes aegypti]
MEDIRLVGKYLPLFPESANLPTYSEVFRKFMFHLRAEKQKPRASAQLTTQALKTSWNKKHLNHLIDDVTVEQKILRYYET
WKSLQKHILRMSAKETEKRNEFSHSLRNLFDIAKKYKPKTKEEKKASQYLQEQREQSTLPTTTETGPTETISCSDFEEEA
NLQATEETNPPTSEQKEASLQQKKTLTGSDFESSSQTQSESFTSIGTIGEDLQIPGPSKSSSTPKPQLKNVITVDVAAAL
DRCKVSDRNAVFLISSIAKSLGHDVSTLLLNKESIRYSRKKNREQKHHELKTTFKPQVNLTVHWDSKLLPSILSSKAIPK
TERLAIVVSGDGIRKLLAVPPIQNSTGIEQAVAVYNAVVDWGLEDRVMFTSFDTTASNTGRKKGACQHLNNMFKRQLIGL
PCRHHIHELLVGKAFKVLQFETAQSPNVEIFRRFQMEWHRLEKSSYHSGLNDAFVKSSITDNERVILLEFFERQLIEHHH
REDYREVIQLTIIFLGGKINENFKIRAPGAFHNARWMAKIIYSLKMFLYRYTFALPKATKDGLARFNVFIVKVYLRNWFL
SSCAAMSANNDLNLLKSLKIYEAVDKEIAEAVHKGFLNHLQYLDSNLIGLCLFDEKLDVADKKRIMEALHTSDTQKIVPA
KSIIESNDVSTLELHSFVQGCQDTKKLFHALEIPESLLETDITQWNCKKEYEDAKRRIQSLEVVNDNAERGIALIKTYNS
KLSTDENQKQFILQLVEEHRKMYKSPNKSDVI
>hAT-1_AMi_1p#DNA/hAT-Tag1 166-807 Orphan peptide[Crocodylidae]
MMNKMFKTRCSYIATLYSPKMFSNNYVIGRLLCKTIYSIRSLQFLYTEDKQYSTTLKCKSKMHFCPQGALPFSQEKEEGF
SAFFACGLPLLLTFDLEVGGSAPVLLTRPQRTGSGHWQQHPFVPVEIRNKELIALLAQKPQERRQSKSKGFGVGRNLPPP
GPVTLRSTEVQKQHKGAERKYTSLLKGKSLNFSEFSILNYILAALVYFHNLCNS
>PegasusA_tp#DNA/hAT-Pegasus 803-2754 wised with 54638886_Dps (2 introns of questionable nature) [Anopheles gambiae]
ILKPICDALKMNLNRANIVCHLGAAARKIRQELTTILKGKFLCLKIDCATRLGRHILGINIQYYCELQKDVIIYTIGMVE
LNNRHTGKFLKTKILEILTQYEISLEQIFTVTCDNGHVQPTxGRPQENCSLPNHYLDLTEAIEKEFYQYITLVRCAVHTM
QLSVVDVVKTFDGEIRKCTAVSNNCRKIMYKTVFNNESLPPLYSKTRWGGIFEMLNHFFKQEDFFNELGQQHSELGEIYY
INEKVFPYLNISFFSDLTEQWDFIKEYVVAFVPVYISTKAMQAKHTSLNDFYLSWMKTILKVGSIPGNRFVEPLTKALKN
RLKNLKESIVFKAALLLDPRFNYLNSKFFNQEEKEEIRSFIISTSERIHLCKAKVQPSSSSSPSNAPNGTLNSSSDFDLY
FTELYGGSLPEQNAEEIQTSANKILRQLISLDAEAHQNSHFDVWNFWLMRKSTHPELYEVATLLLSVPSNQVSVERAFSA
LGLVLSDKRTRMNDDTLENILLIK
>hAT-4_STu_tp#DNA/hAT-Tag1 819-3471 via genewise with hAT-1_SBi_tp, 3 introns (1744:1852, 2663:2739, 2903:3003) [Solanum tuberosum]
MAEDLSKGNRRDPGWKYNYLKDPDDTTRVTCNFCGKTTTGGINWAKQHLIGNFRNAAKCKKCPEEVREELKNYMEEKKIR
KEVYTNEFPEFDEFEYQDNVGGEDEVQEINHKKRGGGSFPSGSNKKLAKGKGPMDMFLQKRGTLRQTNIKDSCDKEARAM
TIQKVARFFYDNGIPFNVARSKSFKEAIEAVGRYGPNLKPPSYHELRVPLLRKEVELTNEIINRHREEWVKYGTSIMADG
WTDKKQRTLINFLVNSPHGTVFIESIDASSLVKTGEKLCELLDRYVERVGEQNVVQIVSDNGSNFVLAGQLLQRKRPHIF
WTPCAAHCIDLMLEDIGKIPIIKKTLQKAIALVGFIYGHSGVLNMMRxFTKNKELVKCGITRFATSFLTLQRLHCQKTNL
RAMFTSDKWVISRWAKLPRGKSATHIVLTATFWSQVSNILKIMGPLVKVLRLADNEKKPAMGYIYEAVDRAKEAIAKAFE
GNAAKYKDIFKIIDERWQCQLHHPLHAAGHYLNPEFFFQNPGIENCQEVTDGLYACIEKLVPSTEVQDKIISEIALYTRA
EQQFGLPIAKRARTKRSPGNNLYIMMXYITLFTVEWWNLYGNSAPNLQKLAIRILGLTASSAGCECNWSVFEHIHTKKRN
RLEHQRLNDLVFVKYNRALKARYDLRSVIDPISLDNIDHSNEWLVGKMGINMEAEDELVFGDDNLTWGDVSRASGSEDVL
AYTRRQKRQSEVITTNASSSRAPRVDIEDEVDSDESGEEEIEGYKSSDTDTNENHPIEEDDMEEYYSSD
>hAT-6_PTr_tp#DNA/hAT-Tag1 1491-3950 via genewise with HAT-7_VV_tp, 2 introns (2870:2981, 3380:3455) [Populus trichocarpa]
MASRKNASGNRLDVGWQHGIDVDKNSRKVLCKYCQKIISGGxFRFKQHLACTRKDVEPCQQVPENVKQMILGVLVKNLEA
TEKKRKALQYSGNDDDDDEIKEISSKDKGKRVASGSGSTQTTLNQLLKKDIREEACRQIARFFYTSAIPFNCVKNPEFIK
ALEMVAKHGPGFKPPSYYDIREKYLKQEVDQTMKLLEEYKLEWKKTGCSIMSDGWTDKKRRCICNFLVNSPKGTVFLSSV
DTSNMSKTADKVFEMLDAIVERIGEENVVQVVTDNAANYKAAGQLLMEKRKSLFWTPCAAHCIDLILEDFEKKLEVHQVT
IAKGRRITSYIYSRTILISMLRHFTKGRDLIRPAATRFATAYLTLGCLNDHKMQLMTMFTSNQWSSCRFARIEEGKRIQN
CVLDSRFWHDVTICIKAAFPLIKVLRLVDSDEKPAMGFIYKAMDEAKEKIQVNFGSVKKSYIPIWNIVDARWELQLHRPL
HAAAYYLNPHYHYNPNFKVNANIKIGLYQCLERMVPNASERCKIDLQLESFKDAKGLFGIxAAKTARDXKTPAQWWDSYG
DECPELQRFAIRVLSLTCTSSGCERNWSAFEMVHTKRRNRLHQRKMNDLVFVMCNLKLNDNQVKKQADDFGVEDDLSSDD
DWITEGEKHPNFDLLGAIDSATRRQNGNEDESDEEEIPNDAEMESHGTEDDLEIQIDDIGVGTSSSTNVHNIGVGTSSDT
NNPLDANDIDECLRNNEEDEGNEAGFSLHDTPADCLF
>hAT-5_SBi_tp#DNA/hAT-Tag1 867-3332 via genewise with 34914880_Osa, 3 introns (1363:1473, 2701:2797, 2917:3008) [Sorghum bicolor]
VLKRNSDDVGWEYGVLVDANNKDKVKCKLCDKEMRGGIHRLKQHLAHEGKNVKKCAxRTPQATEAKEKCKKALADAKRKR
EEKTVRELEIREEVHVSRVGADSDEVTCVGSSEPHKLGPIDKWTRVIDPKATASDSLKQQQLNKELWKERTNEVHKYIAK
WAYTHAIAFNALDNDEFKQMCEAIGQFGPGFVPPTQDALRGKLLEEEYERTKSLLQEREAEKMKNGCSIMTDAWSDRKRR
SIMNVCTNCAEGTSFISSKEMSDVSHTSELIFELVDKAIEEIGPDNVVQVVTDNASNNMGAKRLLEEKRPHIFWTSCAAH
TINLMLQGIGNMPRFKKVVDQAKAFTIFAYGHTRTLECLRCFTEGKEVVRPGVTRFASNFLTLASMQEKKDQLRKMVVHS
KWDTLKDVKSKKGKEATTTILSPSFWRDVKLTLAVFEPLVKVLRLVDGDVRPSMGFVYGELLKAKKQIKDAFGTVEARFK
DVIAVVDKKMNGRLDSPLHLTAYLLNPHYSYSDPSIFDQPKISEGFIACVEKFYYHDEDMQHQAANIELKKFQNREGPFS
KKLARTFENFDYNPASWWRLYGYETPALQKMATRILSLTSSSSGCERNWSGFEAIHTKKRNRLTTARLNKLVYIQFNSKL
LSKREKIKSKKIIDVLLSSDTCEAQGFLQEGGDDCALVEFRDGEEDEMEGTGIPWSVIGEAVGADEQLERRRSARVRELY
EG
>hAT-6_DK#DNA/hAT-hobo 482-2393 via tfasty with Hobo_tp, 3 frameshifts. [Drosophila kikkawai]
MTETAQTLKNKIDSGTYKVNKRTKGKSLIWNILYEILKEDDTVVDGWIYCGKCKKILKYVVNQTSNLSRHKCCVELKQPK
EVKKVSESDKKQATIKCTEWVVRDCRPFSAVSGSGFKNLVNFFIKIGATYGENVDVDDLIPDERTLSRNAEKLAMEKRKI
VAEDVKDLMESGGVAATLDMWTDQYVQRNFLGVTLHYQKNYKLHDIILGIKSMDYAKSTGENILDKIKSLFLEYNVENIK
NITFVTDRGANIKKALENNIRLNCSSHLFANVLQKSFEQTTELDETVHACKKIVKYIKKANLQHRLQTTVKGACPTRWNS
NYTMMKSIVDNWLTITQLLSESPGAQRLMDVNISILKPLVELLQHFERIFKELQTCSLPSLCFVIPSISKMYELCDANID
DFSSVALLKENIKQSREIWKKNVSVWHKAHFFYPPAALMQQDDLIEIKLFCADQMETLNSSVLKNTNSFPPYAESSNSPN
IFTQNSSSITRFKNIIFFPKLVATSNSNSRESVLEEIERYCKERVPITEHFEAIDWWKANEFNYPRLSKLAFILHAIPAS
SAAAERVFSLAGNIITEKRNRLSPKSVDSIIFLHSVFKKYEYFRILKIEQMKMYTVFLIYFNVFWLYQVAKGITKMN
>HATm-55_HM#DNA/hAT-hATm 845-3101 via tfasty with hAT-10_SM, 1 frameshift  [Hydra magnipapillata]
MSQSKPATRSATEIYLLGFTNASINGTRLPSRKQALQFFFHQLKxTKKTVRESSDITIKTVADFWNKAYMPMTTLQHAIA
RLEKIYNEWRNLQKASKRGGATQIAKETAFVASFEDTFDISHVDAERLIQNPEDKLFLKAQLGNGRHSSSMAQIDRKLAV
KLKRKHERQEAIKARTEREELRHAVSNGEAVVETFESDSEKSCNENVDSDHDSAVTPQTKRPRPKNIVSPQVAAALDRTK
ISDRNAVYALASFSVAVGQNPSELALNRWSIRRNRMKHRDETILKLKESFGENIRDVPLVVHWDGKLLPDISGKHEKIDR
LPILVSGQGVERLLNVPKLPNGTGEAMANAVVTAIYDWNLAENIKAMSFDTTASNSGIRSGAAVLIEQKMNKELLHLACR
HHIFEVVLGDVFNSLAGPSTGPDILMFKRFQTAWPLIVRDRYEDGISDPETALVFSSNREMMKEAIDFIQNCLLTENQPR
DDYRELLELSLIYLGHIPPRGVHFMAPGAMHRARWMAKAIYSIKIFLFRSQFRMTKREINLSRFLNIFVCFVYLNSWFTA
SLSIQAPLNDLMCLKRLTQFRTINLNVANVAIKALSRHMWYLSEELIAFSFFDDRVDAATKYEMVNAMKTKTGNGIPAKR
VQLRENNISSSELADFINSNTMRFFVILGISTSWLELDSSLWNEDQVFIAAKHFVAGLSVVNDRAERGVALIQDFNQILT
KDEGQKQALLQVVSEHRKQFPDAKKSTVVKQD
>HATm-6_HM#DNA/hAT-hATm 1206-3335  [Hydra magnipapillata]
MYYRNFFRNNITRLIDSWETLKKSKNKDSKAAEKSREEFKKKGEQVFWIGKDNIKEILKKTSLDKLSYYADIKFLKDQKS
SRLMTLGSKDMRYKTVNKDKKPLKSCNIKQLPQIDESTTDLELFSDISDVSTESDISFDLSQPGPSNAKQELRKGFVKDI
AMTSVSKNISSRDLVHVCTDLIVSSGGNVADFSVSHSTIWRAQKKSIRENAEQYKKNVKIATAKATFPIIAHFDGKIIED
ITEGIKSKRDRFAVSVNIDGKMKLLGIPAIDRGTGQAQYDALVKILDEYGICDDVKGLCFDTTATNTGRLSGTNVRFSHK
QNSILLELACRRHVYELHLKHFCERQCSGKTKSPENLMFKRFQLNWNDIKSSIDSSKFVKYDTQSIATTFLEIHRLDAVK
YCEIALKKNTFPRGDYKELLKLTLMYLCPERDFQIQAPGCVSHARFMSKAIYYLKIQILSLQLSYELTDNQKNEVQSTAE
FISIFYTVWFLKTSLPYAAPYQDIKAYWQMTKYRGYVEQYVQNSETILNGIDATMVSMESHLWYLDETLIPLALLDQGIS
VAEREDVAKMLFSKPVPEFFRHSEKLNLLKTLNFNLEKPPSIAQLVGENSWFIFSLLNLTKLNDKLWLNSPAPLWEYIEQ
FKIFSQFVSNLAVVNDVSERSIKVVSDFVNNVHNEDDRQELLLAIHQRRENLNKAKTKEDLQLAYQAIAK
>HATm-57_HM#DNA/hAT-hATm 468-2744   [Hydra magnipapillata]
MRNSKLRKNDEKFDNIVGKLLPTLEAKMYSQLPTNGDVVRHYLYLTRFELKLTGKKEVASVVWEKVYVFWKMAGIPIKQK
KDIVRMILHLIHLRENLIKNAKKKSYAAQLLSFTNKLSLLFDIAASNAENLIRKDTLRSINSQISDIDFLSDQRHLKKQF
LGPLDKSYAMKVKRMEEKEKNKIKAIEKEKSRKENIKEKSFNVLAAFDNEGKTHNKNEESTIARQKKKIKILENPKVSLM
ADRLNLSNRERSGIILAVAEALGHNLDEISISKSTAYRSGNKIRQQVSNDLKKTFISPMYSSIHWDSKLVSEVDGKVERL
AIVVTGKPSAPEGKLLCVSRIPDTTGRSQATATIDAVKTWKLEKTLVAMIFDTTPSNSGWINGSAKLIEEHFNKKLLWCA
CRHHIFERVLSSVYFKVFGECRSPNYEPFRHFKNEVWPKLSLTSDTTFRKIKIEEPVLKTKKAEVIIFLSGLLNRKSRKI
LRDDYRECCQLALQLLNPKQINIQWHKPGAFHHARWMCTILYTSKMFAFADLAEYEESFIEKLSRFCKFTLLFYVKIWLT
CTSTVDAPFNDLEFYKEMLIYKKIDNDVAVAALETFNRHLWYLTEEMSPLSLFSDKVSDRDKTKMAKIILKNIKENCEHD
IGFPQFPLLKQSTCLTDLIGPKSSNILNLFGYSNEDGGWLVESPKFWKTNTNFNHMFEHIKSLKSVNDTAERAVKLIQDY
ATSITKDDEQKEFLLRAVEHHRKVLPHINKQAIQKLNF
>hATx-25_SM_tp#DNA/hAT-hATx 137-2025 via tfasty with HATx-2_SM, 1 frameshift and 1 stopcodon. [Schmidtea mediterranea]
NYDNCWNFFEKIEKETAKCNICSKQISCKASATTGLHRHLDHIHFMKRIPKETQISPKRIRNSNLFTPIDSFYKPNRTSL
NEIVSKLATIDGMSIRQICSSEFIRKSILSLGFTLSKQPRDVMKLIYDYYDETKAIIISNIKKKQLINQKVSISIDEWTS
LRNRRFLNIHVYYCDGDSDNLGLVRVCGSCTSEVLIELVDQKLKDFEIYFERDVVATTSDGANVMLKFGRLSPADHQLCY
NHAIHLAVMSVLYSKITNNQKISDGVDSDSEQEYCLNSSVSDSESNGSTSDAEFISEEYLLLTKDMNIAETIRRVRRIVK
IFKNSPVKNSILQKYIIVVEQKELSLILDCKTRWNSLFTMLDRVVRVIEAIEKSLKDLNLCHLWSVENTMTTKCILNALG
PVKIAIEALSRKDTNILTSEGILKFLFNALQTENSxLSRQLLTELKYQLSKRRNILSIXLIKFLQDPNFKRDRGDDFFNF
SSKSEIVKIAKVYTARLFRKIGDKENFDLNNEIDLDDMTTENDLIIDKNSALNLSQLLEKSIQESVKQPQPFLDDNYSSL
TKEINLYEVTGKITPNXEMLRXALSTIRPTSTQNERNFXVSGNXVSVRRTRLTDKSIDRLCFLKHYFMKK
>HATw-1_HM#DNA/hAT-hATw 1452-4631   [Hydra magnipapillata]
MLIRILKKLKGYIVKLNRAKNLDFKKHFLSSALSFNGAFSDVVGLLPSDACSTPTSIYNSEIVPNQVTVFVSSDLNLQIT
NDELSCPVTPTSIIYIPLENRSEKFLTETRFSEENLPVSNLDKKLPLFSGDLTYQIKRYKRRINHLKLQNRQVNRRCYEY
KRKYQAILSKYNVRNVNKRDVRKDCKINQLLQINLRLEKEIDLARKRSQSDRQKAWYLKKKIENTILKTSDETNDSFLKE
SLNYFENLTEELKERVDIFEKNVIDVYEGGRYNDEIRSVYYDLLSKNVSVNNVESVIRTVLQKMAGISCGTLPKKSLASE
FFSEMNLLAKAQVREAMLNSTNNVLHTDGTKYNFREVGSFQVTTSSGSYTFGIEDMFSGEAQSYFGELKNLLTDMSKIFS
PDKENYENDLRKLIFSFKSLMTDRTIVNSSFFHQFKHWREAILPFVVENYDQLPLNEKLKISQMHHVFCGLHVIHNLGIY
AEKAIIEWEKVVEQEGSIHGGFKSSQNSRTFDILYELSKLTSYRHGDQRNGKADEWKAFLRKRFSKNFMVSFLHHRFNII
FVLGGATYYHKDHLKEFVFNLGGSNFLHESIRHDIDNIIFHASTRALGIFNKLISGPLFRIIEEEGHIFSLNTIWLQMFN
YFVSCSSDASKMLSGSTFFDVKYLTKDEVFDHLFSNCNDLLLDALTQECLEVICCTCSVMIQSQLRDQLPGGKYYNPGDD
VLEETQNCPRTNVVSERDFASYDRRLKMKPNMTTVAAAGVIMFNNNKTADWIDGKSQEEIERLVILARRNRKGYIRKYRE
KKANILQYKIDEMDKRNLEKEIKEQKASEEKEFLTTEIGKDGGLILCEEDFEKILGTENEIVMKLQRQIKFRKKVLQQKF
PEKWLQLGEKAKGEYYKKFGIDKLKTNLISIFKFLKDVPEQRATAIKCSVIRQINERQEMLLTLKKKVRLEGDARLIMET
GSKIRTGTSKGGVPKFLGKRIKHKMVDNDGKDVWYSGLVVSVLDDNEFDEECEFQILYDGYEDKYDIELVKEWRMKCVVV
EGKADGYVEGEVCKKQKCS
>ATHAT1_tp#DNA/hAT-Ac 1 intron; RepBase annotation has 3 introns induced by a frameshift in the sequence and attaching a mystery peptide. [Arabidopsis]
MTQRKKVCEPEASKTQRRSKGDEASASKTERRKKSEAEAPKKPKKVFEISDEDEDDDDEEDDDGDNGADDVDDDEDNGKS
SKPKKRRQYSKVWNDFIVIKKVNHLGKSEERAMCKHCKSDYAYNAHKNGTNTYRRHLQICKLVPRNGDISQMMVNAEAKF
QARKIDQSVFRELVAKTIIQHDLPFSYVEYERVRETWKYLNADVKFFSRNTAAADVYKFYEIETDKLKRELAQLPGRISL
TTDLWSALTHEGYMCLTAHYIDRNWKLNNKILVFVHXPPPHTGMNLAMEILGKLKDWGIEKKVFSITVDNAGNNDTMQEI
VKSQLVLRDDLLCKGEFFHVRCATHILNIIVQIGLKGIGDTLEKIRESIKYVKGSEHREILFAKCMENVGINLKAGLLLD
VANRWNSTFKMLDRALKYRAAFGNLKVIDAKNYKFHPTDAEWHRLQQMSDFLESFDQITNLISGSTYPTSNLYFMQVWKI
QNWLTVNESNQDEVIRNMIVLMKERFDKYWAEVSDIFAIATVFDPRLKLTLADYCFAKLDISTREKRMKHLRAQLRKLFE
VYENKSNAVSPTTESREDVTHDDETAKGNFSNYDDFFAFRKANVVANGKSTLDMYLDEPAMNVKGFESLDILNYWKDNGP
RFGKLASMACDILSIPITTVASESSFSIGTRVLSKYRSRLLPRNVQALICSRNWLKGFESYENGK
>AeHerves2#DNA/hAT-Ac 696-2615 [Aedes aegypti]
MWLIFTRIMAGRGRVTSGIWYHFSKLENGKGKCRYCHVLIAMASGSSANLKRHLKTKHPMVPVEIGDKNDTSNTASETVP
SSSQKPIANIIQQTSTMNTEECARPFGDSNATEVKQPFAQKSMTNFVEIIKPLSVQKQRSIDVQLLKTICKEYHPLSLVE
GTEFKKFVNLLCPSYTLPSRKTLTYSLMPTVYEDVLAKVKADLDTTLAVSITCDGWTSSNNEGYYAVTAHFFDKCVKLKS
CLLECSEFKDRHTGENIATWITRVLKSFGLESKVVAIVTDNAANMKSAASILKMNHLSCFAHTLNLLVQGAIASSIQSIV
DKVKSIVQYFKKSSYALEKLHDMQRKLDEAALKLKQDVPTRWNSTYDMLDRALKNKNSIISTLALLNNKLALNADDWKVI
EASVEVLRIFNEVTVEISSEQNVSISKTLVLTQIMKRRVQKFVADDILPSEVVKLVKNLKDGLIKRFEMRSKNELISQAV
ILDPRFKKQGFDNEDDYKSAYDALLSQIRDLQEVKSIGEECSGEADVSERTSKSSLWEEFDDSVSKIQFKQDPDAVCSIE
LDKYIAEPILPRTNDPLIWWMERKCIYPNLFSIMQKRLCIPGTSVPCERVFSKTGQICNEKRSRLKAKNVSKIVFIHQNL
>CRATA_tp#DNA/hAT-Ac gi|10140707|gb|AAG13541.1|AC023240_14 putative Tam3-transposase N term  extended wih ORF [Oryza sativa]
QPARIAVTSTQAESVNDSEPIQVEDDEPEDDSENFGTKRKLTSVVWKDFKKVKVCGDVKAECLHCHKRLGGKSSNGTSHL
HDHLKICTLRKIKMGPKTLAQSSLRFNSVEGGKVSVDTYTFDPAVARRELAAMIILHEYPLSIVDHIGFRRFVSALQPLF
KMVTRNTIRKDIMDTYEEEKKRALAYMAGAKSRVGITTDLWTSDNQKRGYMAITAHFIDDSWTLRSIIMRFIYVPAPHTA
EVICEHLYEALVEWNLDEKISTLTLDNCTTNDKVISELIKKIGKRKLMLEGKLLHMRCAAHILNLIVRDGLDVIKDSIAK
VRESVAFWTATPKRVEKFEEIAKHVKVKMENKLGLDCKTRWNSTYRMLSIALPCARAFDRATRVEKLFDCAPSEEEWAFA
SEVVDRLKLFNDITAVFSGTNYVTSNIQLLKICEAKEQIRKWAVCGDSTIEEMSVEMIQKFDKYWKDIQGPMGLATILDP
RFKIDYLLGFIETITGQSSEECATKVAEVKDTLYDLMKEYEVEDDEDNTESSAPPLVNSDLLSSITARVTSRRPAAIRVK
SELDRYLEDELVSINTENFKILDWWKVAGTSFPTLRKVARDIFAIPVSTVASESAFSTSGRVLSEHRSRLTPELLEALMC
SQDWLRNKYRGTYDVLFIHHA
>HAT1_AG_tp#DNA/hAT-Ac 1473-3284 [Anopheles gambiae]
MMAPTNATTSPVWDHFSPVETGAKCLYCLKVFKYTKGTTSNLKRHLNLVHKTVPYLKQKQPIPQTINIDDEAGPSAVNFQ
PSNQYFNSNMSIQGYLKKPINSETKKVLDRMLLDLICKECLPFNLVESEIFKKFVYTLNPNYIMPTRKSLSNALLPSVYN
QEFEKAKEKLSTAKAIAITSDGWTNLNQISFFALTGHYIDENCKLSSILIECSEFENPHSGRNIANWIQGTLNKFDIEDK
IVAMVTDNASNMKAASTELNFCHIPCFAHTLNLIVRDAIKKSVLPVVEEVKRVVMLFKKSPKASQMLADTQKKLNLDQLK
MIQEVSTRWNSGYDMLNRFYKNKIALLSCADSLKMKISLESHDWEAIEQIVRVLKYFYSATNIVSAQKYITISHVGLLCN
VLLTKTSQFRNDEDIAENIQNLVALLIEGLQNKLKIYRSNEQILKSMILDPRIKQLGFQDDVEKFKNICESIISELLPLQ
KPAVEVEKVVKKVSKDVDMLFGDLLKNKGAQNYKTPRQIAENELHQYLSVENIDLENDPLLWWKEHQVLYPSLYTLAMST
LCIPGTSVPCERLFSKAGQIYSEKRSRLAPKKLQEILFIQQNA
>Furousha2_tp#DNA/hAT-Ac 818-2278 [Takifugu]
ARDMRRKKEKTKKDLQSAVAVTLTADMWTSMNMEAYLAVTGHYVDKESHGLHSSVLGVQHFPQKHTAENIATVKRSLMEE
WGXAGKVRCLVTDAAANMTSCARMLQIRHTICIAHSMNLIVRKSCDQIPTITEIRNKTRHIVXYFRSSVTAKEKLTQIQQ
QLGTPVHKLINEVPTRWNSTYQMFERMTEQKEAVWVSLASLKTDITPLTPEECQIIEEMLRVLAPFDQATRELSEEKRVS
GSKVIPLMRMIHIELQRQATTVTKTAAQQLAENLRKRLTDAICSMESLSVMTLATLLDPRFKTIGFVSQQKASEAVKRLK
SECAEEMRSQEPDPTEESLALHMGQNPVQVWKHISLCLFVYFCGTLSCDNKLMINYFLGXNLWKTLDMEVAETQKTSNAT
ADSIIEVQRYLAEGNTPRNQDPLQYWKRNQKTYPHLHQLALKTLCSPSSSAPCERVFSKAGELVSKRRNRLGAKTLQKLL
FLNKNS
>39580027_Cbr#DNA/hAT-Ac gi|39580027|emb|CAE65641.1| Hypothetical protein CBG10699  [Caenorhabditis briggsae]
MMSVSKVFLYLSPTICTRFGECEHRCLLGKKTIFKYCKNDVQILVEAVVQLKILKNINVTEIEEEGVSTYEERQLIFIAG
DIYAGVKDSSFPMMLAVSFVASIRSRRTMIVDGVTTKSKPTVVDEPSDDGYKNVDAVEKIKSRYFYSSKGLDLLVANLEE
QVKLDLKNAEELSMTSDGWSSQDKKHSLLSLTAMFRSTWKQVSIWKTYGYKFFRANYKNLDKFNIDKSSVVCITRDGATT
MSSLCSNLNMKSIHCYAHLLQLSVKDMLDSRKELDEIVEKMKKITRKMGRSGIAQEAFKSILNEEGLPSRMLKKSTEVRW
SSLLLIIRSFIQNKKVVVLLGVDYPAIGFPLFSTSDWELLEAVEKVLSPIAETTKSAQHRYLATASVIIPSICLLMSELD
EFKDSEVEHVSDLAENLKKSIQHRCGKYKLDDMLRTSTFLDPRFKDMFFTSSHKDSIIRQLLKKDGSVSETSGKVDDVVP
QVNETLSAYDKYLLKHSQKTPEPSPMSTQVEEEVTRYLRSPPSRNINPYTFWQNGNLWKSLARPGHAQPGPRAGS
>14091822_Osa#DNA/hAT-Ac gi|14091822|gb|AAK53825.1|AC011806_2 Putative transposable element  (probably messed up) [Oryza sativa]
MGGAIVLPPPLSLSLSLSLSLSLSLSRALGGGARKGARVAAHKQRCKGGRKQAEGQRATTRQCKGENMRPRKRGSRYREH
EWRRIGSGMPVHGKASPPTPSSDQQVSEEMSTPGTSSSPAGGAVAVTSPTPSPSPSLAPVTTPNTNSKDTNVIEIDDDVA
VGNKRKLKYAIWQEFGQVKVGNVWKAKCSWCQKLLSGNSGGCPHHSVMLETHVFDQNLARKKLALMICLHEYPLSIVDHA
GFHKFCDVLQPLFKLMSRNTIRKDILEPNLPPRQELDIINWWKFAWIKYPTMQKIARDIMTILVTTVASTSTFSTSGRTI
SPHRSRLTPKMAEALTCMQGWSRADMLEVLTWVKEKRPSVTNTWMIKEVDWGPNQDLLQVYFYLTTSLLVHRRQEMKFYT
FWIRIRTS
>7267311_Ath#DNA/hAT-Ac gi|7267311|emb|CAB81093.1| AT4g05510  [Arabidopsis thaliana]
MDNEDECTYGGEGGQTSADTSQSKSLVSASRFKRSRTSDMWDYFTLEDENDGKIAYCKKCLKPYPILPTTGTSNLIRHHR
KCSMGLDVGRKTTKIDHKVVREKFSRVIIRHDLPFLCVEYEELRDFISYMNPDYKCYTRNTAAADVVKTWEKEKQILKSE
LERIPSRICLTSDCWTSLGGDGYIVLTAHYVDTRWILNSKILSFSDMLPPHTGDALASKIHECLKEWGIEKKVFTLTLDN
ATANNSMQEVLIDRLKLDNNLMCKGEFFHVRCCAHVLNRIVQNGLDVISDALSKIRETVKYVKGSTSRRLALAECVEGKG
EVLLSLDVQTRWNSTYLMLHKALKYQRALNRFKIVDKNYKNCPSSEEWKRAKTIHEILMPFYKITNLMSGRSYSTSNLYF
GHVWKIQCLLEMRLKFDKYWKEYSVILAMRAVLDPRMKFKLLKRCYDELDPTTSQEKIDFLETKITELFGEYRKAFPVTP
VDLFDLDDVPEVEEGKSALDMYLEDPKLEMKNHPNLNVLQYWKENRLRFGALAYMAMDVLSIPITSVASESSFSIGSHVL
NKYRSRLLPTNVQALLCTRSWLYGFVSDEEGMIQFYFSYSSTVM
>17507561_Cel#DNA/hAT-Ac gi|17507561|ref|NP_490685.1| transposase (1A616) [Caenorhabditis elegans]
MLCASAEVEVFYDTDNNRKSDPAVFWQNPLNRSKFPLLSQIANRYLTTPASSAESERVFSGAGRVSTKLRRKMSTKSLSK
SVFLQQNQKVLGFKIGLD
>34898446_Osa#DNA/hAT-Ac gi|34898446|ref|NP_910569.1| Similar to Zea mays putative AC9 transposase. (P03010) [Oryza sativa]
MPSSPRSSSSWSPPAAARLGRARSPSTGGGGGRARALTVAEKTTSWLRTADALRDITGRCSIPRGFTALLAGDLPACAPP
PPGAAFVYVAAMEEERLMRLPLQPFFAAVLAHFGLAPSQLTPNAWRLLAGFAALCRRAGVAPPPPPPLTVFRHFFTAIGC
PPGAWYSFRARGSASTGSLFTRLSNVTMNPWWKEQFILVSSPAPWPCPVRWGKPRKHANFPPVLTTAEKDMATKLLLARG
SSLIDLTTYNSIAAAKNIIAPPPPPRTLKSERAYASVNAMMREPRPHKAPMAAAAEEVDVKSEPDLDGPACAPSSSRKKK
RKMVDDDAIAVEGPSGHGGGGGGWPALYPACLPPPGFKKLDDDDDGHEGGWKAARQLLQGAVTARRERAFAASKPADVVA
ASYVAMLQAANHVAFSLGYALELEEKARARERDAGAAEAATPREELAEVKDELAEMETAVEAMRAKLAKAKSAIAAAAAS
AAQPEPERIKSSWGPGGARSARRRGTNTAWREEASNEMPRALGGSEAFKLAADEVALYRPLPGRVYIRSKHHTRGYINGQ
NLHPSDTGVAAKPLPHRTDAHGAPPRTGARTRRHDTSTPHRRARPQHLPPPTSRSRSRRWSRGATVRAAASVGGGALRAD
YYISNSLASHQLTPTMSEGTPPPLTIHRQIRRPRSSPQGSQGKGGYFSSLSARAATKRPIGSELDRYLDEDLVDSRTKNF
NVLDWWKVAGTRFPVLRRIARDIFTIHVSTVASESAFSTNGRVLSEHRSRLTSKLLEALMCQQDWLRNKYKGREAERGRR
PVNAIAQAPLQVVVGEHPSRWSRPYWTPPPPPAAPHSSPRQSTSGCRSGGEGAARQSGHDAGVRGDGGESGDDAGGERGA
AGAGAALRDGKACACYDIALLVLLCAVGVVRAIDAQASFTYEPAGAAEKDGVGAALCAMRLVGRKRS
>17538310_Cel#DNA/hAT-Ac gi|17538310|ref|NP_499862.1| transposable element like family member (4A862) [Caenorhabditis elegans]
MSCKKHLLKYFSPIRVRTQALRLPDKPIYQGCFSTILDPRWKVLLKNDVDTIPCEIIQLFQDIYSDQDEVLEFIRAVEKE
DDEPYSNVDSEYDDFGDSSEVTEPVAKIQKTDFELYIQEKIKSRGKHIALTDQSLTVKMEVTRYLSTAVESIFPRDYWLN
PLSKSSYPRLSQFARRFVICPTGSSEVERLFSTAGTILTKYRKTLTSENFKMLLTLNKNIRLMNPDMEVKLPSMIKSINS
LFCYKLSFFENISFS
>HAT2_MT_tp#DNA/hAT-Ac 751-2910  [Medicago truncatula]
MQENMDVDDVPTNAVENPIDVDSDHDLQGEAAGDVGKNRKRSRAWDHFVPDGKRAKCIYCNMTYAAEGNTHGTTNLNKHY
KKCPKNPNRVIDKAQKTLVLGKQVEGDSNVSFKLVEFNQLECRMELAKMIIIDELPFKHVEGVGFKGFMSRAQPRLKIPS
RVTVAKDCMELYKEEKVILRSLLSLNQQMVSLTTDTWTSIQNMNYMCVTGHFIDEGWELQKKILGFGLIANHRGDTIGKA
LEKCLKDWGITKLCTVTVDNASSNNVALSYLTRNMSAWNGNTLLKGEYMHLRCCAHILNLIVFDGLSLIDSSISKIRAAC
KHVKSSPSRLALFKVCVKDANISSSQKVVIDVATRWNTTYLMLEVASKYEEAFNRLEGEDPSYVSELEVVGGTPTVYDWN
RARVFINFLKIFYDATLTFSSSLHISANCFFRKLVKIHTALSSWIQGEDVVLKNMALTMKAKFEKYWSDENINYLLFVAV
YLDPRYKMEYLDFCFGWMYGVEKAKMIIAKLHELIGKLFDYYKSVQPIGFVSSDSSSSSTNTMQSDVVTFGVGGNVDMDA
LHRRRVKRRQSEHNSSELVRYLEDEVEDDYEGFEHLKWWKSKSTKYIVLSLIARDILSIPISTVSSESAFSTGGRVIDPY
RSSLKAETVEALICTQNWIKPVTRSVLDESKAFDVLEFETGINCFLAFIFLFYLLVLFLHCLFFYVIRNVIFEWSRGVCS
>hAT-1_DBp_tp#DNA/hAT-Blackjack 823-2485 via tfasty with HAT-28_SM, 1 frameshift. [Drosophila bipectinata]
DCSCEIVGTRDLEKHLATPKHSKKVQDASTSRSILDFTYQKSATEAHAVWAAEGTLAYHTIKHHQSYRSMDCTSQLIRSL
FGDSHAGKNVSCGRTKTEAIVNQVLSVNSIEMVVQDLKKTPFFSIGTDSSNHGNLKMFPLIVQYFDPAEGGIVVKLLNIK
EKFDEKAQTIANMIKSELDKHVLTEKLVAYGGDNINTNFGGLNRKEGENVLTYLRREINQNIIGIGCSGHVMNNSAHHGI
DRFGSFDIECIVMNIFNHFSIYTVRTNQLKNFCDFVDVEYRKLLSHSKTRWLTPRIDRILQIFPALKSFFLSTDHPPIIL
ESFYKDDFAELQLLFISSLMNVFHNRIKSIEREDNSVLEVLQIIDEVSETLTERLNSKFIPFAVKQKMQKLTNEGKETEC
QNFTESMLVVYERSCEYLLKWSQSLRHLEDFEWLNFKPGKDLRYDSVEKSVAFLASKNIEIDDTKLFDQFVNLKKFLNKK
EAKDNFFRKRGNEKVCEFFSANSCLESCSEILKIAQYFFAIPCHNANCERAGKELGGNEKTAVSVFSTSVIWSP
>HAT6-2_SP_tp#DNA/hAT-Blackjack 884-4457 GENSCAN_predicted_peptide_1|856_aa (1 intron) [Strongylocentrotus purpuratus]
MTSTSSKKRSKKLQTFSGDYTKKWSCIVPSKRNTNSACCTHCSSDFGIGHGGSNDIQVGLHLKSVKHRTAAAEASSNSRS
HDIAQFFVAKDNSVTNAEVKFTQFLIEHNIAFSAADHLSQLVKNAFPDSKIASKYACRRSKATAIARTLGQETKGDIIRK
IREKPFSISTDGSSDRGADEQLYPILVRYFDDDAQHVVTVLLEIATTKGSSTGKNIFQLLDQALTENKIPWKNVTCFSAD
NAAVMMGVHNGVAAFVREKNPEVYVNGCVCHLLHLAAEKGAQQLPSSPVDLLIPIFYYLEKSSKRHKAFHEVQSCCDVKQ
HAILKHVCTRWLSLEQALNRLIEQWVPLVEFFRSESETSSSSAQKKKSVQSKTTAKKVQPQPQPQKKNTGNAKVSVTSSK
PVSGKASTSSESSSGTKRKIEDSHQNRGKQLKPSSSHQVHQPSQKKSSGYIIPHIAKTSSSKPALGKSSTTPASVSKAST
SKSSPVVTKTLSSHGTAPSTSAFPSTSSIGKKASDVTKKDLPKGTKVGSGKVKMPPPRSSWAPSSQKTGQVFAGTEHAVS
KTSQEVPATSKAAAIYDKLTNDENKLYCLFLQHNIPLFTVLNLELQEESPKIHVLLDRLQAFLQNVLTRFVKPKVLMASS
QECDYKTNDNQREDNDLVIGSKVRELLQSGNFSDGQKRKFFSSVRQYYISVCNYVLSKFPLKDPLLMHARVANLERRQET
PFVSVEYFVRRFHFMEDDIDTLELEYASYQSDPSVDKIDASKADLAWVAVSQLKDPTSGQFCYAHLVQVMMLILSISHSN
ASDERLFSLVRKNKTEFRASLSTATLSDVLTQKATCQSKGQNCHDMKFSDQLLTKX
>47212791_Tni#DNA/hAT-Charlie gi|47212791|emb|CAF93153.1| unnamed protein product [Tetraodon nigroviridis]
LKKINVLSAEFSRRFADFEAQKGRFELLSNMFAINVESAPTSLQMELIELQCNDMLKSKYDSVGAARFPCFLPDTIPQLR
TQAAQMLSMFSSTYLCEQLFSMMKVNKTPHRSRLTDEHLHAVLS
>HAT-1_SM#DNA/hAT-Charlie 500-2296 [Schmidtea mediterranea]
MEKKRKIDSECRKFKDQWNIQYFVIESSNKALCLICNESIAVLKEYNIKRHYETKHFQNYSKYTGSLRTEKFEAMKRGLK
SQQSSFTKLKTEQEAATRASFRVALEIAKRGKPFTDGEMIKECIIAVAEEMCPEKVNLLKTVSMSANTVARRVENIAENI
SSQLFDKNGHVECFSLALDESTDVSDTAQVLIYIRGVDKSYEVHEELLDMYSIHGTTTGTDIFKGVEMAINQKNLRWKNL
KCITTDGGKNMSGKDKGVVALVSKAVENDGGSKPLVLHCIIHQQSLCGKCLDMSEVLKPVISTVNFIRSFGLNHRQFRQF
IEEIGENDLPYHTAVRWLSCGKVLQRFFELRAVIEIFLNEKHRPLTELQNNAWLWKLAFYVDLTKHVNELNLRLQGENQH
LPDLYTNIKSFRKKLILFQSQLRSKCFSHFKTCEIFSHTTETEFPIDFAIETLSALKINFDTRFSDFDAIANQIKIFQNP
FDTDIETLAPELQMEMIDLQCSDIIKNKYQNSSLLEFYKGLPLTQFNNLHKFARGLFSVFGSTYLCEKTFSKMKYTKNVY
RSKLTDEHLKSLLIIGTSKISPQLQTIVSGKSQLHKSH
>Charlie12_GG_tp#DNA/hAT-Charlie 314-2122 [Gallus]
NAVIADXNISTYLMXSQKKTEPKKRKIVDEGRVFNEKWTDEYFFVKTNNMALCLICKEIVSVFKDYNLKRHYMQKHAAKF
DAYQGMLRKDKIAELKKSLSSQQNLFXKVKTQTDSVIKASYVVANLIAKKSKPFTDGEFIKQCMESMADIMCPDKKKTDF
SKISLSHQTVARRTEETGKSIERNLESKAANFKFYALAIDESTDATDTAQLAIFIRGIDNEYNVTEEMASLVPLKDTTKS
LDLYEAVKXTLKRFSLTFVNISGIATDGAPAMVGKKEGLIKLIEDDAIATGNSRLMKYHCIVHQENLCAKALKMDNVMQI
VIKAVNFIKSKGLNHRQFQEFLKSMDADYGDIIYFSEGRWLSRGKMLKRFYDLRNEIKSFMESKGKFVPEXEDXKWLTDL
AFLVDLTAHLNELNMRLQGENQLICAMFQTITAFEMKLKLWQAQVMANNFMHFDTLAKHSPVNSEKYAAVLSVLIKEFEN
RFQDFRKNHXFFCIFATPFSVDINTLPANFQMECIELQSDIQLKEKFDHVSLPDFYKTXLTREKYPSLHNHALFMSSLFG
STYICEQLFSRMKHRKSXISSKISDEHLENSLRIATTXIEPD
>HAT-10_Mad_tp#DNA/hAT-Ac 3409-5518 via genewise with HAT-9_Mad, 1 intron (5053:5179) [Malus x domestica]
MDARDSDSVTDEESVEIIMGTERDLGSESIDNTNSSSTKKKARTINLGKRKLRSPVWNTFTKLDTIFEDSKRRAQCKACK
KVMIDDSHHGTGNMKRHLNTCPAKNNVELFMSASELCSQKFDPLVFRGLLVEAIIKHNLPFNFVEHEGIKALFAYVCPDI
KLPCRNTIKACVLRMFKTEKQALHNLLGSVEGRICLTSDLWSSQCTDGYLALTAHFVDKDWKLNKRIISFCHMPxPHTGV
ALCEKISALVTEWGIEKKLFSITLDNASSNICFVNILRNQLNIRGLLLMNGDFFHVRCCAHILNLIVQDGLKEIDSSVVK
IRECIKYVKGSEARKLKFQECVKQVGILDSKRGLRQDVPTRWNSTYLMLDSAIFYRYAFINLGLSDSNFESCxSSEEWDK
VVKISKFLGYFYDVTCLFSGTKYPTSNLFFPKVFVIQLQIKAAIDDCDSFMNKMGDYMHIKFQKYWSDYSLIMSIAIILD
PRYKLHFVDWAYTKLHGVNSMEYxNVHGTLIALFNVYSEISAHLNFSNIPMNSMSNHQTEGEGDALFEDFDNNYNGPNSV
EKGELQKYLDDKRLDRRQDIDVLSWWQMExFHYPILSQLARDVLTIPISTVASESAFNIGGKVLDQYRTLLLPDTVQALL
CTRDWLFGKGGSISFL
>hAT-5_DRh#DNA/hAT-Ac 646-1819 via tfasty with Hopper_Bd_tp, 1 frameshift and 1 stopcodon. Fragment with internal deletion as well. [Drosophila rhopaloa]
SPGTSLAARGALPNFFNNTMPIKSPRDRKWALGRDLALWMARDLLPFHTISHNGIKDFLTKYKVVVSADDIPHFKTLSTT
ALDDVYECILKEAIRMVSGQKHFALTFDLWTDNYRRRSYITFTFHFLSTNFEMKHITLETKYVAKSHTASNILTELEEVT
EMYHLEMGSNFVVTDQGSNVKKAINLGCINNHFCLGHGLHNLLNIDGYNSVSDIKNLVVKCKNIVSALRFKTHVLRCQAD
ALxNEVLSSIDNWKNSSEFLLKMYKELLGDPQQDIDQQDSSRDGSSACKILKLAQRHSKNTKNSNLEAECHLLLSLSSSQ
DVLTFWNEKAPAMPLLSKLAQKVLCIPATSTPSERVFSIAGLTVSQKRSQLSPHNVNKIIFIHDNYETCKV
>HAT-1_SP#DNA/hAT-Ac 2100-4507 (2 introns)  GENSCAN_predicted_peptide_1|594_aa [Strongylocentrotus purpuratus]
MPSKVWRVFTKVSSTTVKCTICDRVLGYKGGSTGAMLNHMKTHPNSIEDDRQPRLSSFNRQCNPDRAQRISNLIADMIAK
DGLPINFVEGEGFRALMHDVEPDFTIPSRQTVMRILELKFLEQKTKIKHWMSGCEHIAITTDCWTSLGQEGFMTVTAHGI
DKEWIKRSFVLNTSPVASLDDNDEDNDPPLPQRHTSQALKSQLREVAQTWEINNKVCGVVHDNAANVRVIGEAVGAPDVP
CTAHTLQLCVNAGLNSNGQLQRVIGAVSRLVGHFKHSVVASQALTAKQDQHNLPKHRLIQSVKTRWNSVYDMFARVTEQR
WAITSVLSDERLTLHRDATTLQLKDEHWSIVDNMGKTLEPFLVATKVLSSEEHPTASTVLPMITGLLDNFLIVEETDSGI
VRQFKETTSEQLKRRFHIKSARERDEDVEIEDVSALHLASALDPRYSNLTYLPRAMRNVVKNKLNELIPERDDEEQNADV
EQPSTSLDFLITGRRFTAPQQQRDSVEEIHTFFDLPVVPSTADAVAWWKANEASFPLLGNVAKRFLTIPATSVPSERVFS
TAGNIVTKKRSCLLAENVNMLIFLKHNAKSIPLI
>hAT-6_DR_tp#DNA/hAT-Ac 225-2941 via genewise with HAT-1_NV_tp#DNA/hAT-Ac, 1 introns (1248:2077) [Danio rerio]
MASGAPCDLVSKKNTTAAVWEYFGFRPNEKGEVVNTEDAICKLCYKKVIARDGNTSNLRSHLRIHHPLTAARMDQSVSAT
VSASTGAGATTSRSTAITQPTIMGAFSKTIQYKRDSARWKTCTDAVTKYLAKEMVSFYTVEKKSFKDMVKVLDAQYELPG
RKFFSQTAVPQLYSKVRDDVQVLLSAADSYSLTTDMWSSVNMTPYMSLTVHIITPDWKLESKCLQTTYFPESHTADNLAA
TLTAALQEWQLDEKKLSAITTDNAANIHAAIRSLHWPWLNCFGHNLNLAVTNGLHDQKQKTERTLGLCRNIVGAFSHSWQ
RKHELHKKQVDLGLPKHSLVTDCATRWGSKLAMVERILEQAQAIRHVLSDDRRSSLSLTWQDMDVLKAIHEALKPVGDFT
DILSGENYVTSSCILPILQLCRDNVLAASENDLQLTKSIKTGILTKLEAKYESSSVRKILRKCTFLDPRYRGGYEADDNA
LAETKAELQAEIVSLEAAGPVAIRVEEGEAQLEPLRKKMTLGSMLQKKPDAMAGAVGSGTVEDRVGAEITAYCLEPVTQG
DEDPLLWWKSAAGRFPQMSRVARKYLCVCATSTPSERVFSTAGKVVGPQRSLLKPDKVNMLVFLAKNID
>hAT-7_PTr#DNA/hAT-Ac 1455-3650 [Populus trichocarpa]
MDNREDPTPNESNPSSSEPNSSPIPVPVTTSSTNSNTEEGNPASRCNKRKTSQIWDHFKKLDGNPKAPRAACMYCGKDYA
CHTILNGTSNMWSHLGVCKKFPFVIDRKQKTLVLEPKPIIEGGDNGEENLVTIKAVGYNYEECRKALGKMIILDELPFNF
VENQGFKSFCQVMQPRFDVPSRLTIWRDCLKIYVXEKEKLKKALKDQRLCLTTDTWTSIQNINYMCLTAHWIDEGWNLNK
RILNFCQVSNHKGETIGQAIESCLLEWGIDNILTVTVDNASSNNLTIKYLKRVTSGWATNILSNDFMHVRCCAHIVNLIV
CAGLKDIDDSVVKIRNAVRFVRSSPSRQLVFNQCAERLKIGSKKSVCLDVATRWNSTYMMLDAAXKFDVVFMRLEETDPR
YLSYFEVDSKGKQKNLGPPALEDWEKARSFVKFLKLFYTVTLKFSGSLYVTSNSFFHELISMHTSISQLCRSEDVYVSKM
AKNMMAKYKKYWGDQDTQNFLLYVAVVLDPRFKLKYVRFCFGRLYDVEEAENFTIKVKDTLLRLFEHYMNVDENVEVVHS
VGTSINEDVNVDLMVVNDDMLDDLASQFKKHLEEEGGVQKKNEVERYLGDDCEDPNDFKLDILGWWRRNATKYKILSKVA
QHVLAIPVSTVVSEAAFSTGGRILDPFRSSLSPSTVQALVCCQNWLSLAPIPINIRTFMDYIENSEMIESGNFSYKFKCS
YFIISFIYICLI
>HAT-6_VV_tp#DNA/hAT-Ac 975-3027 via tfasty with CRATA_tp, 1 frameshift. [Vitis vinifera]
MTSEEGENFSMPSAGSTPITGSTSTTDGTLISKRRKLTSVVWNDFDKIIEDGQDYAICKHCKGKLKADSKNGTKHLHVHI
DRCMKRRNVDIRQQLLAVERKGHGKVQIGGFTFDQEISREKLARAIILHEYPLSIVDHVGFRDFATSLQPLFKMVSRNTI
KGDIMKIYEVEKDKMISYLEKLQSRVAITTDMWTSNQKKGYMAITVHYIDESWLLHHHIVRLVMLFFFNFQSVFLFDPLM
ILFVLMIFFFLMRFVYVPPPHTKEVLSDVLMDFLLDWNMDRKVSTVTVDNCSSNDGMINILVEKLSLSDSLLLNGKIFHM
RCAAHVLNLIVKEGLDVIEVEIEKIRESVAYWSATPSRMEKFEDAARQLRIPCNKKLSLDCKTRWNSTYLMLSIAITYKD
VFPRLKQREKYYMVVPSEEEWNMAKEICGRLKLFYNITELFSGRNYPTANTFFIKVCEIKEALYDWLICSNDVVKTMASS
MLQKFDKYWSGCHIVMAIAAIFDPRYKIKILEFYFPLMYGSEASNEIEKIRGMCYELLSEYQSKSKLGQKTSSYGTSSGS
TLLELNYDEQDPLSKFDLFVHSTIGESHTKSELDYYLEESILPRISNFDVLSWWKTNGIKYPTLQMIVRDIYAIPVSTVA
SESAFSTGGRVVSKHRSRLHPDTLEALMCAQSWLWKEKEGNRFT
>Chapaev-19_HM#DNA/CMC-Chapaev 369-2383 via genewise with Chapaev-16_HM#DNA/Chapaev, 1 intron (952:1024), 1 frameshift. [Hydra magnipapillata]
MPNSARNHDENRKVVCLLCLKKANRQLTTFLHEKIQQVYRQQINFEDVRVPQGLCETCRTALRKRYEGRPGELPALFDFE
TIIVKPLTRGNPCECLICRIGRLKLTEKHPLDTDTKEEKISDKRCSKCLSLIGRGLPHQCSVSQFRENIRSLAANDGKVA
EQIASSTITSKDASPHGTVRLSQTKGGRALPITPGPSSAKQLFKDHPVVTAQDLAQVQINTGLSNNGIRKLATTINNVST
TKVLEPYIVKKFQNLGKNLEESFTQTTAAFTNADKTTSNYIVAHCKSLNSLIEDLLLTRKIFSNHVIKLGIDGGGGFLKV
CLGVCIKVXSHTSQASKDTGVKKQLLVAVAEGVQENYNNVKVILSLLDIQEVNFVISCDMKLANILCGLQAHSSSHPCTW
CTAESSNLANCGTPRTFGSLKQSFHAFSAAGSNTKNAKKFGNVVHEPVLSLEDSALVIDLIPPMELHLLLGVVNHLFKIL
KDSWPKADEWLQALHIQHQPFHGGQFEGNSCNKLLKNLDLLQTLAEKDNAFQVFPIIETFRKFANVVSSCFGNKLHSQFE
EKIDEFRASFLALPIGTVTPKTHAVFFHIKEFILRKKMPLGIYSEQTTEAMHHCFSTNWARYKRPISHPEYGKRLVMCLV
DFNSKNL
>Q9SY99_ARATH/145-341 transposon family T11 Pfam:PF01609
LAADIVKPTRDDVTGISPFLVNDKRYMPYFIDCIGALDGTHVSVRPPSGDVERYRGRKSEATMNILAVCNFSMKFNIAYV
GVPGRAHDTKVLTYCATHEASFPHPPAGKYYLVDSGYPTRSGYLGPHRRTRYHLELFNRGGPPTNSRELFNRRHSSLRSV
IERTFGVWKAKWRILDRKHPKYEVKKWIKIVTSTMAL
>Q9X307_BACAN/105-393 transposon family T11 Pfam:PF01609
VFTTLLQAKIGGVSKISHSLSSYFERIRILDSTTFQVPDRFAAMYPGAGGCSHKAGVKIQLEYDLLSGEFSDVKIEPGKR
SDQAYGATRTDMIQKNELYIRDLGYFRLQDFKSIQDKQGYYLSRLKLPTKIYRKECETVVFKTKPAQLRAVYIQIHLEDI
MKQLQPGQVYELHDVYVGSKDKLPTRIVVYRCTEEQKQKHLHDRAIREKKKGITYTERTKLLQGITVYMTNIPTEWVPKE
KIYDLYSLRWQIELLFKIWKSWFQIHRCKSIKQERLECHLYGQLISILL
>Q9S0L5_STAAU/196-459 transposon family T11 Pfam:PF01609
EFQKSILKDRNSYSKTDYDATFMRMKEDHMKNGQLKPGYNLQIATNSQFVLSYNVYQNPTDTRTMIPFLNSIQETYGHLP
EYIVADAGYGSESNYKAIIDDFNRTPLITYGMFIKDKTKKYKSDIFNTQNWNYDEINDEFICPNNKRLGFKRYAYRHDKY
GYKRDFKLYECDDCSECPLKNQCMNFNSKTNKKIMKNYNWEYFKSQINKKLSEPETKNIYSQRKIDVEPVFGFMKAILGF
TRMSVRGLNKVKRELGFVLMALNI
>Q8TJ02_METAC/146-247 transposon family T12 Pfam:PF01610
KIGIDETSFKKGHKYVTIVADIEKSKVMYVCEGKDSSTLTRFNKDLINHGGKPTMIRSISCDMSPAFINGISSEFPDAKI
TFDKFHVMKMMNEAVDEVRKQE
>YCHG_ECOLI/126-298 transposon family T11 Pfam:PF01609
LQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPVMRLVALMNLGSHILLNAVTAPYRQSETVLAHSMLATIPDNSI
TLFDKLFYSEDLLLTLNQKGCNRHWLLPAWKNIASEMIELGNTASPGTIPKRLEHLRGALEVVFITKRPRPSRPRSVKIS
KTRYPVKHSAAPL
>O33754_STRPN/91-268 transposon family T11 Pfam:PF01609
VEDTLRASGSFDLDHLEAPSAAVAIDVTESPIQRPKKNQSKNYSGKKKRHTLKTQIMLDLTTHKVCQMAFSDGHTHDFTL
FKESIGQSLPETTLAFVDLGYLGILKFHENTFIPAKNSKNRRLSEDDKQLNKEMSAIRIEIEHFNAKFKTFQIMSVPYRN
RRKRFELRAELICAIINY
>PITG_06069 (crypton)  Cre-like tyrosine recombinase [Phytophthora infestans]
MAVADVEAIRDACVTKEARGKYKSSLNGIAKWIRKELAKVDHNTDRFFDSNGELNLLEFTPPYFEQFLVYKSRDVKAGTL
SGYRSAIKDLYRVRRLALPPEYGDGMKQLFSGMKRMEADSDQISNPKTSGKQPLTYSLYQKLCKETLELGDGGFSHLFLI
SQWNLMCRSISVQTVQTQHFVAKDDGIGVIFVKTKTNQEGTGPRDPRHVYANPLSPSTCWVTALAIYLACHPRLQQGPLF
PGSNQKLRFSKTLGSLLKLDGSAKTYGTHSVRKGVATFACGGSTGGPSIVSVCLRCGWSLGGVQDRYFRYEAAGDQFLGR
VVAGLPINDSKFATLPPHFNSTGDSATTSVMRTVFPSLADEPNLNGILQLCLASLVFHRKYLQQNLPTNHPLLSTIVFTN
VSVFHSLQEQLQLGDSSWMHPTGIPPYIELYKKLDKQQQSIDLLPDKLEQRMEAILEKKGVAAGNITRDLLHEELRALLE
EVGLQKEKSAALSTLSTAQTRYYHTWGGKFHVLPKDFAFPSIDPLGAWILWWFGNPELNYPPYKGIPSDDLDTPQKKATL
SEWSVMMRHIINGIEKDLGKPMPAIRDEVHAIELFKIGYNTLELRPSKRKRRNAQIKLTTVLRLIREAGQEQRSPDGICG
RPLRRRKRRTRHSNSTCATGNSSVRDEE
>Q9C761_ARATH/539-624 (hAT) hAT dimerisation domain, hATC (PF05699)
TLEIYLDDEPRLEMKTFSDMEILSFWKENQHRYGDLASMASDLLSIPITTVASESAFSVGGRVLNPFRNRLLPQNVQALI
CTRNWL
>PITT_12815.orfA IS4-family transposase [Phytophthora infestans]
MFVGPKLTADQAMEVLEQVWRLSRANAKRFLRIMKTLKKLHCFRLRDAAAAVDSSRCFDEMMDDATARLRYRFTVAQLHH
LAALLGLPRDGVRTAAGDNVSRVEALAMVCRRLSEASKLFTVASEFGRSTGAYSRVIAKTVALLYNRHKDLLYFNEAVIA
VRIAAYCKATRDSGAALQSCWGFIDGTKQYISRPSAREIGDIPNENLQRSVYNGHPRKHCFNWQSIQAPDGIIVSMFGPV
EGRKHDSTMLNISGVLDVMEENQEGLFSNRVIYGDPAYGCGGFICSPSSVGSAAGATFNKNMSSVRECVEWGFGRVKTLW
EFLNWDKKQRVRQSAVGLNFYAAVLLFNCHTCLQPLGNQISMYFGMMPPSLEFYLGLNPLQDEELHR
>Q9X3R8_RIEAN/87-271 transposon family T11 Pfam:PF01609
IRQRISMEFNEFEDIFIVDSMPMKVCENARSTRSKICKEQSYSSPTYGYCASQKLYFYGYKLHAVCSLNGVIKNFDISPA
SVHDIHYLKDIGEQMRNCTLIGDRGYLSAKVQIDLFNYANIKLDTPMRSNQKDYIPQFSLYKKKRKRIETFFSQLCDQFM
IKRNNAKTFEGFKTRIISKITAATV
>Q9X6Y4_BACFR/121-306 transposon family T11 Pfam:PF01609
LRKRIAMEMDGGEEQFFVDSKPIEVCRVARGKRCKMGRAGNFSQAPDFGFCASQNTYYFGYKLHALCGLSGVIHSYDLSK
ASVADLHYMKDVKHTYHDCSIYGDKGYIGADVQLDLFETAHIRLECPYRLNQKDWKPTFIPFAKARKRIETIFSQLTDQF
LVIRNYAKITNGLFARIIGKISALTI
>P74920_THIFE/155-256 transposon family T12 Pfam:PF01610
AVGVDETSSRRGHDYITLFVDLNARRLLFATPGKDAKTFEKFSEDLQAHGGSAEAITDVSMDLSPAFQKGAAEHLPNAEI
TFDRFHLMKLVNEAVDAVRKGE
>O02473_STYZE/37-117 transposon family T1 Pfam:PF01359
HLINHSRQKRWVPYDQAPPPVPCQERFGKKVMLCVWWNFQAIIHYEFVPNGRAIDAELYCEQVERVYEKLKEKYPALIRR
K
>Q38463_BPPHH/20-123 transposon family T17 Pfam:PF01797
VTVTKYRADILTYERLERVAEIAHDIADDFEADIKNVDGGTDHVHILFQTKPTTDLTKFINSLKGVTSRRIRSEFPEVTQ
TLEDAFWQPGYFLATTGQVSIDTL
>O18580_9CUCU/37-117 transposon family T1 Pfam:PF01359
TYENILRKRAYCESGKPSPSTSKPNLNLNKRMLCIWWDIRGPIHYELLKPNKKLNSEKYCQQLDNLTTAVQEKRPAMFNR
R
>Q05410_ANOGA/40-122 transposon family T1 Pfam:PF01359
HYTPESNRQSAQWTATGEPAPKRGKTQKSAGKVMASVFWDAHGIFFIEYLQKGKIINSDYYKALLERLKVKSAAKRPHMK
KKK
>Q24778_9NEOP/37-117 transposon family T1 Pfam:PF01359
LFDNRKRSASXLDPGSAPKQCPKRKLTPRKVMVTVWWSSAGVIHHSFLPNGVSITADVYCEELNTMMEKLAHLQPALVNR
S
>Q48788_LEUME/161-260 transposon family T12 Pfam:PF01610
NLCFDEFRSTHGSMSFICIDADTHKSVKVLSDRLNRTIKQFFLSQYSTAEWAAVQRVIMDMNASYQAFVHELFPNAELII
DRFHIIQLMGRTMDTIRTQC
>Q8CLZ6_OCEIH/150-246 transposon family T12 Pfam:PF01610
VIAIDEYKGDAGNEKYQTVIADPINRKPLEILKDRKKDTLVDYLRMHGEKVEFVVMDMSPSFKAAVDKALGHPIVIADRF
HFTRYIYWALERVRIRV
>Q8CK71_STRCO/163-256 transposon family T12 Pfam:PF01610
VLGVDDFALDGGTYGTLLVDATTRLPLTLWEGRDAKQLGRWLREHPGIDIVCRDGSLTYRQGITAGAPEAVQVSDRFHLW
QGLSRRVQDIASAH
>Q48370_ENTFC/164-265 transposon family T12 Pfam:PF01610
VLCFDEFKSVRGVSGAMSFIMMDGQTQRLLDIVENRQLPFLKRYFSHFSREIREAVEWIVIDMYAPYVSLVKKLFPKAQL
IIDRFHIVQHIGRTFRNHRIKE
>O50347_LACHE/159-257 transposon family T12 Pfam:PF01610
HLAFDEFKGVDRQLHFICLDGDNHQVVQILRTRYKKTLLKYFGRFSPQARANVKTVTMDLNFYYQDIVRACFPNAQIVID
RFHMIQMLTRSFNSLRVQV
>Q47820_ENTFC/159-260 transposon family T12 Pfam:PF01610
VLCMDEFKSMKSVSGSMSFICVDGTTNQLFTILEDRRLYKLTQYFLRFPRKARLKVKYLVMDMNASYCQLLKTVFPNAEI
VTDRFHIVQHINRSFNQLRVQI
>Pi_model.supercont1.32.9.1 1426 novel transposase Pi-A IRs plus 9 bp TSD
MRATFARFPELLLVDCTHKTNRYDYQLCSLMVMDAFGRGQFVQHSLIETNSDWHMRKALIHFKTANVGWDALRVVMVDKD
MTEISVIREAFPEATVLLCHFHVLKFLRGVVREARFGRYSPSEYDAMGHLFANLVDATSEEVYAKNFSLLETFSCAQGNV
SFWKYFCQNWDQSKDMGTHYKRQTLPHFRNNTNNRIESNFGKIKLDLDGSCSMKECLESLLRTQRRCDNESLARVAFEGA
WTHYGYDQELNLVLRLCTPWVASTLQPEYELAISDVAVRLYTFNATSDNTVEVERGLKRYSFSKVDWIGDCDFSTTLKLP
CRHVICFRRFAGLVPCIPVSYIHSRWLIKDSLSLTSLPHVDVFNYSKTTKPIGEYNVDSVLDSRQKYSISRNLLNRVAQE
LADLPMRLFSKEMEYLKDYLGRLRTG
>Pi_model.supercont1.18.5.1 1380 (hAT) hAT family transposase [Phytophthora infestans]
MKKCSESVGVLIESELGKLFGVMWDRWTHGTTHYVGMYGVCYADGKRRERLLSLSPLEDSSQDAEVHIEMFKRVLALYNK
DISMVAFLVADNCATNQRIATLVELPLVGCASHRYNLAVNRYLAAYEPELAAVNSLMVQLRHVNSAAELSKFTDLNPVKR
NVTRWSSTFAMVDRYKKIRDSSRQVDAVDEFIPKGAAHKKLLGLLEHLKKLDSVCKALQREDTSMADVRVLFDQVVDDYP
VMASHLRPAAKIVHAPAFEAALVKICNNAKLTASESRAVQRLVEPDAATGKRKERSTSDNASAILRGGKQMRAAGAAGVS
FHELAKVVPPTSTAVERLFSQCKLILTPQRSSMLSANFEMLAFLRVNRDMWNATSLVANE
>Pi_model.supercont1.10.5.1 1404 novel transposase Pi-A IRs plus 9 bp TSD
MRTMFESFPEVLLIDATHDTNSSNYKLFSCMIHDALGKGQHVQHCLVKNEKKETLRTACEQFKEGCPSFDSVAVIIIDKD
FTELAVLKEQFSKARVLLCHFHVVKYLQEEVEERFNFGSWTKNEMKRLIQLLVSAPTEAGYDKVLAAMKMLLRLEEKQQL
WFSYFDDNWTTCKEQWSSIYRGNIPHLGNQTNKRLESSWQKLKSLINRSTTPDECVVAILFWQTVNERSWARSINRIGVA
VSSDYDEELNMLLNLVSRHAVELVKQQYEFAILPTTKYQYYPVGPYIMMQYDDENKTDDILEEYMISTEAWPCSCIFRMT
HLLPCRHIIYYWNETDCDRLLPKSIIHPRWLLKNYRKLKSKVTLVKDVEEAFEIRDIKTPSTTRTKSQNEKFRELQVIGK
QIAE
>Pi_model.supercont1.25.5.1 1414 novel transposase Pi-A IRs plus 9 bp TSD
MRRMTRKFPEAVCIDATYGTNINRYRLFSFMITDKFGCGAFAQHALIDGESRSNMQSAVSAFKENNPAWKKVRVIIIDKD
FTELALLKDAFPDAVVILCHFYVIDYLKREVSKKNYGFTNFEKTHVKNLVTMMVRAETEESFDHYLSALKELCATRLAFM
DYLKENWLNCKDLWCMFKRGNIPHLDNNTNNRLESSWGAAKGILNRHMAMDECIDHLLFLQQAAEDGYWTKVNRVGCRYN
LHYDEEMSVLAKLATRHACDLVEDEYKLSGQLTYDTSKDKSRPSFVSLTRVESNVTYAVSVEKKQCSCSFYRTLQLPCRH
IMFLRRQQDGTRSTIPYNSVPARWLIAEEEDDNDEAEDTVPNFTVKDVEAPSTRVLYHNEKYRAGIAVCQKIAEVISDKG
SRSFHKWINYLTKV
>Pi_model.supercont1.1.23.1 1419 novel transposase Pi-A IRs plus 9 bp TSD
MRQMFGHFPEVLMIDATHDTNSSNYKLFSFMIHDAMKKGQHVQHSLLQNKRKETLRLACVQFKETCPSYDSLAVIIVDKD
FTELAVLEEEFPGVRILLCHFHVVKYLQEEVAKDKYNLDAYTKKEMKRLIQLLVSTRSERNYDDVILTMKVVLRSEAKVR
LWFDYFDRNWTSCKNQWSSIYRGNVPHMGNRTNNRLESSWQKLKTLVNRSTALDDCVVSVLFWQTVKEKMWLRVVNKIGV
NMNAQYDAEMNALSNTVSDHAVQLIKQQDDFALLSATKYRYYPMGPYIMMQYAADTEEDIQEEYPHAWTCSCIFRVTRLL
PCRHIIYYRKTIGCTDIVPESILHPRWVVKNYKQLRKETAEPVELPYEDRKIPNPSCGRAKSQNEKFNELLHIGKQVADV
GATWGTTAHEKLKQELLKV
>Pi_model.supercont1.10.8.1 1313 (hAT) hAT family transposase [Phytophthora infestans]
MHDVAKKVGKTIESMLGSCFGIMFDGWSSGSMHYIAVYGASDTDGDLRLQLLALSPLDDGSQDADVHIKLFDGVLDVYNK
TLDMVAFIVGDNCSTNQSIATKLGVPLVSCASHRFNLAVNKYLADYEPLLAQVNTLMSKLCQVNNFAELSKVTSLHPIKR
NMTRWSSSFEMLQRYIRIRPQIKTVDAVEELIPTGASHRKLVALLEHMKKFQSVTKKLQTEGISALAAHIAQIFTTATTS
CISVAIHTTSNITHRLFPFEHSGQQYLVNLRGLTLYTAHTLQERWRRFTPCSHWTVSGFASSLWSPSTESVVF
>gi|157412066|ref|YP_001481406.1| (TyrRecombinase_Crypton) recombinase [Escherichia coli APEC O1]
MSRMKNQSVIRQFSESELHQQLETFGNHDKQLSRLIRYFSHLRYNTAKTYLHWLRVWNEWYLANARLHTDWPVSSLPVSE
DALLAFMGHLEGKLSRSSINSCLQALNSIHKKGLNLPGIITSEAWYMLEALKQSEARKRKTTKQATPFLIGDLKALIKLR
STTNSVRKLRDLCLIWTGFETLLRSSEIRRIRLKDLSLDSMTGEFNLTVYRTKTNISTLLTYRLTRQLTNCLLRLMNLVK
MDQHSHPDEFLFQAVNFHDTGYMPPGWKLRSKGNELSELLKRHNLPYRAKQSLLNDEDEEDTVDDAGMLSKNSLLRAFKE
MWNELYPNETKTRYWTGHSVRVGGAIQLNIEGYSLPQIMEMGNWSNEEMVMRYIRNIEAGKKAMIKLMRNAFDE
>PITG_20451 (TyrRecombinase_Crypton) /1543
MGLEELQPGNTLRAKATAVAAFFKFLKGEDVEEEYVKKCIEEDESGKSFVCVMDKFGIHLAFSEGKKGKLLARNTAMQYY
RQAKIWLLEQFPQHRASLESRLLKIGKTLDNFRLKRDGGGFVAKAPPCTKADLKKMVVYLYVNACSESDYQDAALLCLLW
YLFGRASDLSMIKKRNISIDAASVFFLRLVRVKTSEEQDLSLFPDADFATCPLLAVALALSVQAAPCLALIGNLPDQVQQ
TPTTLSPDVPLVELLSAPPATFGLATPAPPPPRTAAAPTIYAHVNRVLDRVAPAAGVSAALTSHSFRRGFNYIFNTSRED
HMIAKFHRVLFAACYQLETESFNINRKVLDVLTACVVRHYPVVKGLNPDSPAVQRLETCVTQAGRTLPDLLAWSTHHAG
>gi|90417263|ref|ZP_01225190.1| (TyrRecombinase_Crypton) Integrase/recombinase xerD-like protein [marine gamma proteobacterium HTCC2207]
MIDDILAKFDGAFAKNTIRAYRSDFIQYQTWCLHNNIDSIPATAEVMAEYVDYLATIRKSATIRRRINSLGTVLKLSKHY
NPTNQPEVILAIKRMHRKIGRAQQQATPLTKPLLNKLLTSCDDSIKGLRNQVLLRLGYETMRRRSELCAFKFEDICQAPN
GKPAIKLNFSKTDQFGTGKILPISQELFDLLEKWRGMISDEGHILRSINRHGHFGSNLHPASISTLLKALQKDLNMDSDE
QPLSGHSFRVGAALDLLEQGEPLERIMLRGGWQTDSTAMSYLRNWIV
>Pi_model.supercont1.176.1.1 1255 (hAT) hAT family transposase [Phytophthora infestans]
LDEDDVDECATCEASGVNLTSVSPVMPLRAEIRAAYDHDSTCSSILKHLRSPSADTLGALSRSVRNKIHPISSRGRAAGV
QHRQLRCPTCRVHAPPGLAEGLALCDSLVEKVPSLGSYLAPQAPIVKFPIFEMACVQVLNGETRLLTRNSVAALAQFAAP
ALIQPQHAAANKENKKLSFAEQALKKRKVDAQQQPRYELVQYIPPTSNIAERFFSQAGIVLSPQRQVMAPAQLENILFLK
TNRRYWNVAMVQMVG
>gi|89076628|ref|ZP_01162931.1| (TyrRecombinase_Crypton) hypothetical protein SKA34_03615 [Photobacterium sp. SKA34]
MAKKIPIIDCDEKRAKSITQFKQVADNIAIWQSLTHHSYAENTLVAFKNDWNHFLMFCERNKISALPATAETVHRFIEKM
AESRKLASLKRYIVTIGLIHKCHALPNPCQSQEIKLAMHKQRLDKHDDYTHAQGFRDDHLQALLDTFALSTKPKDVRDMA
IWAITFEAMLKRSEVAALTINHIEIEDSGLINITVNGRIIALSDLASKSVQRWLTLGMIMDSFIFRRIDRHSNIGDKPLD
HSSIYRVFRRASQELELPADVIFSGQSPRVGASQDLADSGLSISQIQHQGRWRSPAMPAQYIGQRGKRDSELKKFAKKNI
NK
>PI_12590_gag (Copia_gag) gag protein for Copia element [Phytophthora infestans]
MSPSPADSAQDYAYAIDATSTTARINKFDITNFHTWKFKMQMVLEERDLWEVVSDELKMEHCATALDQATFKRKSRKELA
VICLAMEDSQLPLVRSANGAHDAWSRLEGHFDKKCLANKLFLRRRFFTTMMEEGDDVLEHINKIKTLAEQLDAVGAPVSE
DDLVITLLASLSESYQFLITALESRADSLSWELVTDRLLHEDMKRKEQGGGADGAAHGQAFMTSDNGKRKGRQAPKTSAC
HYCGEQGHWIAKCQVRIRENAERQRPQRANVARDEEESGEFLFLAGGGSMTTKSSDKWLVDSGATQHMTYSKEYMKNYKK
MSPVDVHLADDGVVTGSRDRRHRDVHETPRGPRRVCSRMCGTFLRCHATSSRLVASPRMLVP
>Q9S7T4_ARATH/977-1059 (hAT) hAT dimerisation domain, hATC (PF05699)
ELDQYLEESLIPRSQDFEVLGWWSLNRTKYPTLSKMAADVLSVPFCTVSPDSVFDTEVKKMDNYRSSLRHVTLEALFCAK
DWF
>Q9SKI5_ARATH/466-557 (hAT) hAT dimerisation domain, hATC (PF05699)
DGADLFMELKVLREVLPNEVTKPIKVLDFLKRVEGCYPNTWISFRILLTILVSVASAERSFSKLKLIKNYLRSTMSQDRL
NGLAILSIERAM
>Q9CAS8_ARATH/585-669 (hAT) hAT dimerisation domain, hATC (PF05699)
DLEKYLEEPLFPRNSDFDILNWWKVHTPKYPILSMMARNVLAVPMLNVSSEEDAFETCQRRRVSETWRSLRPSTVQALMC
AQDWI
>Q9FWT7_ORYSA/469-552 (hAT) hAT dimerisation domain, hATC (PF05699)
ELDRYLEDELVSINTENFKILDWWKVAGTSFPTLRKVARDIFAIPVSTVASESAFSTSGRVLSEHRSRLTPELLEALMCS
QDWL
>TRAC9_MAIZE/638-720 (hAT) hAT dimerisation domain, hATC (PF05699)
ELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTK
DWV
>Q9H5R2_HUMAN/342-431 (hAT) hAT dimerisation domain, hATC (PF05699)
FYRHYAKLNFVIDDSCINFVSLGCLFIQHGLHSNIPCLSKLLYIALSWPITSASTENSFSTLPRLKTYLCNTMGQEKLTG
PALMAVEQEL
>Pi_set SET-domain-containing transposon protein, (note SET-domain purposely removed here) [Phytophthora infestans]
MQAGLMTRGAHSESYWRLRCFADTSSDEENTPPNLLNRRWEPRGKTGMASETSASIKTRARSKTGKARETSTVSKTNRAS
ARSVTSARNRTSEAAASHHYTEDTAIDVDGSSTSNWPSSSSSTGTMTPPWLAPSSTGTLTPPLLTPQRIACVEPSTSQSH
PQGCDMRVQPIRIIGSPTTSSPVLLESAPSPPSAATTTSSARGPPRSRLRSQRDRQAATLPYARPRQSREGGSHTPPPTV
NARGLIRTSSDVGVQPRRRVARGHNEFILAKWPSNVAWLREMYNPLGTVFPSVPHEGWCTCFEPCRVGSYRNALMHIYCN
VNSCPYGGQCGNGLRESDTIFLGRNVRTRS
>Pi_Dtransposase novel transposase core consensus sequence [Phytophthora infestans]
MDITCIAMQTSIQKTCFEQWGDTLVMDWTHGTNNLGYHLGSLVVTSATGRGIPVIDFLALDQKAVTMERIVEFFKRKNPS
WNSIQTVVIDKDFVEWRVLEKAFPGAKVLLCQFHALTYWRKVCRRPKYLQRKLY
>PITT_08743  (Gypsy/Ty3)  polyprotein [Phytophthora infestans]
MHWKRTGETSGPIEEGGPVIASGLRRSVEAKGLSAKRPDSCRGAALETDVKSAAEIVCDATQKESPSVVCEQPGDASAGK
GSAVKDNLELSKRGGTVREAGDSSSTGGRGTVVENMFTMGVVDEAGVQTKFITRKKLRKFLRIKTKSIDEPDFMLVLTNV
TIKQVARSLQRQDQPDNVGSAKAQRYLDTDWDSFKGNPAYQLLMEYMDNVFRPELPEGLLEKREIEHRIDVEDPNLAMYR
QQWRQSPEQQREIVRWVVDMVKKKLIRPSISPHAAPTFWVRKPVGWRIVHDYRYLNSNTVRQSIPMTRKEDILDAMSGAY
WFSTMDLMSAYYQVRMREEDIKFTAFQAPNGLWEYLVLHMGVCNAPATMHRLTSKLFRGLENTKSFYDDIYVFTKSQSID
DHLKALRKTLNILRDNKLYVKLAKCVFCADEIPCLGDFVGRNGVRMDPDKVQTIKDWPVPRTQEELHSFLGLTGYVQRFC
PDYAAFTATMFTLLKKKNKRNAKIQFNDEQLKNFKELKRRLCNPPVLHLPNFSQSMHLRTDASKFAVGGVLFQVVDEVER
PIAYTSRKMKSAELNYPTQQQELLAIVHALAAFRIYCLDKPPIVETDHKSLEGLFTQKMANRRLVRWYDILAEYQPTFSY
LPGAKNGIADALSRRPDLQPDTKYFHDLSVSSFNDTSFSLALSQVSTDSELLKRIKGAYVKDRDVQTIRAAIQRRTSTSK
SKEKHQHHKLYRYYSEANGLLWYQSPVDDHPRIAVPNDVKLRQSIIKESHDTNYSGHPGAERTYLTLARRWYWSKMLKSI
QTFIADCEPCRRNKPRLTKPPGLLEPLSIPDERWRSIFMDFITDLPRTKRDVDSIWVVVDRLTKRCRFVPTTKKVTAEGV
ARLFIDNIWKLHGMPTNIVSDRDRKFVSAFWQHVFKSIGTSLSMTVAHRAQGDGQTERMNRTLEEYLRCFVSPRQDDWDI
HLANAEFAINSTVNSSTKLAPFEADLGYIPLNPLQLAAEQLDTVTKSRRGAEFHERQAAILFRCRETLAQTQERMRYVYD
KNRQEQVFEVGDRVYLSTKHLDPKHTGLPASTKFGPKWIGPYSVVRKIHNHAYELNIQAGNKLHPVFNTGSLKPYSESTR
LSRPNEVVLADGSIGQIVKRLVKKRTHKRRTQFLVEWVGEEKQTWKPVENLSQVP
>Ps133204 candidate novel mobile element ORF jgi|Physo1_1|133204|estExt_fgenesh1_pg.C_240173
MWLLISRKTNMESHLYEGIQPAEFYDKLENVLATQKSAFKVNIALGYKLVSRTDDSETRYFHPNISNTSVISEICFMELA
DKLNYPSSGYMVKGITGFKIYIYQRDHALGDSEAVIPKAIRDNKHVINFPKTNNKCVFHCIAYHKQEGAKKDPRRIQALV
KQAFKQYCSYKEITYTLGLFRNFKPIDILQFDELEECFKLNINVFNMDVETGKVECIRCSDKDYDSINILSHENHALYIT
NVGMLQQKYQCSMCEMVFVSSDKLRNHTKNQCELVNIESFPAQPTIYQPAPNSIRSMLTKYSIKDADHYIDHFIVYDFEA
ILKPTGVKNGVNTIFTNEHIPVSVSVADSLTEEVRCFVSDDPKELLKDMFQYIKEVAAKIQQYNVSKYESLLRKIINVHG
LTDAEVPGLDLGKTYKMDDVNAWIQNGEFACFFDFHSKLTFGKKRSDYGKLKQCIGQVPVFGSNSGRYDINLIKADLFAV
IGNDNITSVIKNPSYMCIATSDMKMLDISNYVPAGTSYAKYLSTYLGECKCDDKIRCVCGLGKGIFPYEYITSFDVLSQP
EVPPKSAFDSALRSTSISDEDYVRVQFVWEHYGMKSIKDLLIWYNNPDVVPFIKAIKAQRELFKRFELDMFTDADTASAD
RINNKLGHIDGNILISCVGCNVARKNMSLKGFRHKKLLEFNSDREEKDIYTKMKANIAGGPSIIFNRYAKRNETKIRGGK
ICKKIIGYDANALYLWALGNEMPCGRLSTIEAYTGIVDDIVNDKIFGFLECDIRTPEHLKPYFSEMTPIFKNTLIDCSDR
SVIGQNMFEYNEERKQSRAKPARKLIGSYFGEKILIFAPLLKWYISHGMEITKTYSFIKASSHKAFAPFMEAVSNARREG
DADKSKAMIAEMMKLVGNSAFGRSGMDMSKHKEVKYESDEKAIKSKIEHFTFHGMEELNDSCEFTMKKRKLNNKNPIHLS
IAIYQLAKLRMLEFYYDCIDIYFDRLNFQYQEMDTDSGYIAFSCEKPFEECIKPELREHFQQHNQV
>PITT_00781.SET  SET-domain-containing protein of Mutator-like transposon (note, SET domain removed here) [Phytophthora infestans]
MVGLSASDLLPQTLRAGETLEYYTRAFVCGDPRGQRIAVVTRVDTTPDVDFPISVDTEEPIPLDMMTKRLSDASGAPVPL
SESQWRKLRTYQLEGGSVPAPSRSSVLKRALQSVVGDAVAAVHQALRDMREDIVPESPQSDFDSPNAHIQPGTALSSSKS
DAMEALTSGAIASHDVKENTREEEGRRPSILEIINLVSSEEDDERGVAVSTEDQAAAYVKAIPTRYVRAKIRHQPKKRRA
EWHVPRSRKRCNQKKCAVTSSGMNVYHARTLKASRMKDILSSPEVKRRLQNLHDRRKSLPETPSQEEEATSLQHQGLEWP
DDVEHLTSCKSNGVLFPDIGKFDKCECVIDCFLDGCKNVFSATFCTPDCCSLGAMCSNAPRTLDT
>Q9Z3D0_XANCR/1-79 transposon family T8 Pfam:PF01527
MKKRFSEEQIIGFLREAEAGIAIKDLCRRHGFSEASYYLWRSKFGGMSVPDAKRLKDLEAENARLKKLLAEQLFENDLI
>Q7CM17_LEPIN/3-87 transposon family T8 Pfam:PF01527
MNKKGKYSPEFKEQAVKRTLSGSFTIKEVAGSLGISYFVLRQWRGEYLKKSEDQLPLTDKQLKESEELKKLRKENLKLKE
EVTIL
>Q52959_RHIME/1-79 transposon family T8 Pfam:PF01527
MKKQRFTEEQIIAVLKEQEAGAKVANLCRKHGISDATFYNWKAKYGGMEVSEGGSLKRRRGERQAEEAARRAMLDAAAL
>TRA3_LEPBO/31-122 transposon family T9 Pfam:PF01548
EQQIKHNEVQIKKFIKKLKLEWNEIHCCYEAGVTGYPLYRYLKSLGVNCILLAPGKIPRQNTDKIKTDKRDAIKLARLMR
SWRIGIDSCFPV
>YI11_STRCL/74-171 transposon family T9 Pfam:PF01548
LVAHGQNVVYVPGRTVNRMSGAYKGEGKTDAKDARVIADQARMRRDFAPLDRPPELVTTLRLLTNHRADLIADRVRLINR
LRDLLTGICPALERAFDY
>Q7TTD6_RHOBA/1-309 transposon family T36 Pfam:PF07592
MNELRAVIQDNTAGSPTVPGLKWTHLSVAEIVRELFQRGIKVANEVVSRLLGEMGFKTRQQVKSKTKAPSRDRDEQFEKI
EKSIEDYKNTGDPVFSIDSKRKESLGEVHRSGDVIANQAAEVLDHDLPAYRDGEVTPHGIYDVQENTGHVTVTTGSDTGE
FAVASFQRYWEEVGSVQHASAKRILLLCDCGGSNSYRSNTLKHHLQELSNELGLPIQVAHYPVHCSKYNPIERREFSHVE
RAFSGRIFSTASDVAEAAESTSTQTGLNVTTAELPEFQPVRKSGKRVPKPPNVEYDKDLPDYNYTFNPQ
>Q56249_BACP3/292-361 transposon family T35 Pfam:PF07282
WGMFTTFLQYKLVEQGKKLIKIDKWFPSSKTCSCCGRVKESLSLSERTFRCECGFESDRDVNAAINIKHE
>Q97Y67_SULSO/296-365 transposon family T35 Pfam:PF07282
YSYIIKRLEDIGEELGIKVITVDEAYTSKTCSLCGEAHEDGRVKRGLFVCPRTRKAINADLNGAINILHI
>Q48345_9NOST/296-364 transposon family T35 Pfam:PF07282
WTQFRQWVEYFGKVFGVVTVAVPPHHTSQNCSNCGEVVKKSLSTRTHACPHCGHIQDRDWNAARNILEL
>Q82R35_STRAW/98-392 transposon family T36 Pfam:PF07592
RPALLALVEPDVRGDPISPLRWTTKSTRQLAAELTRQGHRVSADTVAAVLREEGFSLQGNAKTIEGAQHPDRDAQFRYIN
DQAKDFQAAGDPVISVDTKKKELVGNYKNAGHEWCREGdpVRVRTHDFPDADLGKAIPYGIYDLAADAGWVNVGTDHDTA
AFAVASVRRWWHAVGRDTYPRSHRLLITADAGGSNGYRTRAWKFELAALAVETGLEITVCHFPPGTSKWNRIEHRLFSHI
TMNWRGRPLTSHEVIVNSIAATTTRTGLTVRAVLDTAVYETGVRISDGQLNALPL
>O93670_9CREN/300-369 transposon family T35 Pfam:PF07282
FYELKSILKYQLEKYGKKLVLVNPTYTSKTCARCGYVNYDLTLGDRIFVCSRCGWTVDRDYNASLNILRN
>O50244_9RHIZ/32-123 transposon family T9 Pfam:PF01548
HGVIENTADSVLGLTKRLVAANTQPIFCYEAGPCGYGLHRLLTKLGFDCAVVSPAMIPRRAGDRIKTDRRDAEMLARLWR
AGELTPVWTPDE
>Chapaev-1_CE#DNA/CMC-Chapaev 1803-3814 via tfasty with Chapaev-2_CE, 1 frameshift. [Caenorhabditis elegans]
MERDDEFAVFSDEFFMQRKEIISIRKTSKRKTNENLILRKQIAQITPRAKKYRIIWISELRRRNRSQSRNVVTLPKYTIE
WSKLENKSSGKSRIDLALDLLQRISREEDIRNFMIDFQKYLQQNDSQSFQVQLTHWQTIIFQEKCRFSNNQLRRVKQYYK
MFTDLEIMPTINLTMQLKTRMSTIDNYKATTYISKGEKVTVVKIIDVEKSVIPKLERFSVSKQLRHDSYTDGKIVIGIGG
DSGGGTTKLCLLIGNCDHANSPHRIVLLAVFDDSDSRELIMAYLSDLIVKINNFTSITYMEDGRVVTRGVVQKVVGDFKF
TCDLLSHKKQCATYFCPFCFETNPRGGLMQKLKDLNLQKIYFLRTMNSYKLNSKYGSFGVRCGSGPILQNVKLEHYLPAM
LHLIVGLFTKYIFEPIWMAVVSLDNKTSFEIRRNKEETKRVADLKIQDANKKFEASPLKRKREMKAQFTALKEEKVLLDE
TLDGLAGGYLKQFENDLEEVGATRRAWFQMYTGNHTKLILSEKGVTAAFKNLKNHMTPMLLNVKNAMSRLSKIMSLSANR
LLSDDDISELDESMKEFVEFLQAAHPEESITQKLHVLVAHVVEVAKDGKELGRLSEQGIESLHAVFNRLERRFHSVRNTG
KRYLYIAKELSCSNLISDMEEVSGTFQKNKS
>Academ-1_NV_tp#DNA/Academ 899-5641 via tfasty with Academ-1_SP_tp, 1 stopcodon. [Nematostella vectensis]
MAKELEKFDIPLNRRKRASIFSKCIICQVDRRDEKLRNVKKASVETFKNAVRIRRDEVYERLSKDLEEISEREIQWHSTC
YSSYTSEHNLRHCHAKFEAQARDVENQISSEPTISTRSSTPPIDLSKCFICGNRSYKKDKRLLNIATNEASLSLRQAATS
KGDEKMLRLLDSVRDDLCAADGRYHKNCHASYVSKSNLKHKGFVEEKGESLYDEAFKTLAAEIREGIEEGKAYDMVTLLS
KYCGLLEERGVDGSSYSKQRLKLCLKHHFEDRITFHQQPSKNKPEIIFSSQISLIDALNAAAQSKSDSRTYLIDVARYLR
SEIKKCDGISFKPLNVNDVSLDSARRIIPDSLYWVIRLLLTADEFEFKRMSPSPCKKKEDERRILSIAQDIIHCASNACT
KLPKHISLAMTVHHLTGSKQLVSLLNRMGHSSSYDDLKAVDTSLAMEVMARAEQHGTVVPSVISPGAFVQLAADNNDLNE
ETLDGKNTTHATTMVVYQRKVFGPDPPPIILADHSSRRRSLPESTNLYELLECPCYGRRPALNEHIRKVKNEWFSSELDV
LVRALREDEIWLLLRMDLTGRTPAAVMKQTVPGWSGFNTILYPDLPLSSKIGYCPMIDGASTEFSTVYTVLKHAQKVSAV
AGQEDTVITFDLAIYIKAKQIQLRYPEEFANTVIRLGGFHIALNFLSLLGKKFASSGLDDLLIESGVYAAGTTSALLKGK
SYNRGIRAHKLSMEALHRMMWSAYAQWCKDCEDSGLDETMISRIEESREAILSRDNTSQNLEVLECDIEKLAASLGKFKE
EASLQSKTFDFWMRYMSMVKLLLQFIKAERTGNWELHLASTAAMIPHFFSMDRPNYSRWLPVYISDMRQLEVKHPRVFEE
FMAGNHAVSRSGQPFSQVWTDMALEQSVNADSKSKGGIVGISQNPAALQRWFLTSHERASVTTALKDAYSAQSDHTHSHK
ELSSKRIARDEADVNKLVNCFASGLMNNPFEHESDALVNFATGVVLPTEVAKHLMESERNGQEQMAVFVKERINSSEVSF
WDPIPKLKVKTFDTVTKRVQVKATNEKLVTVGSDRDLFGRLLIAANARQVDLKGVLAHELSSVPYALAHQDGSLRKTNKS
ALAGIIEANVDVPSMLPPTTKDTVHLIDAMALVQAVKSGGSNTFGELAVKYFSVITGPMNAACCNEVHLVFDQYWEMSIK
AGERSKRAATSTSLEVQISGPATPIPKQWGKFITSSKNKVNLCEFLTKSLTELGMEQLESDQRLVLGGGERDGFRALEVT
FGHSEEVEALRSDQEEADTRLFLHAKHASINHPRCRIVVHSPDTDVLVLGVCHYTRIGCDELWLKTGIKDRLRFIPLHAM
AQHLGERMCDALPGFHAISGCDSTSSLSGIGKKKAWDILQSNKDHQDSLSLLGAAENVGAATRSKCEEYVCKLYHKRKST
SADELRYFLFCQKKQKSERLPPTSNSLQHHLERANYQALVWRRSLxAMQDLPRPEDSGWERSGIELKPVLMSKDPAPSSL
LELSTCGCKSGCQRNCSCNNNGLSCSEACSCMAGTDCRNQYSLRLACNDLSDSDDSDSDSD
>Chapaev-5_HM#DNA/CMC-Chapaev 547-2610  [Hydra magnipapillata]
MPTFSKDHNQCRQVVCTLCMKKSDREISEYFISEIKRLISGNINFDDERVPRGICVTCRFLLRKLASGDEEVSIPQLYDF
ESILIKPSTRQTTKCDCIICQISKTKGKGKHPFEKPSQQEVQKEEKSFEKRCTKCLSVIARGLPHNCKEATRRENLKALA
LADPLGAEQIASFIVSSKEVSSDGTILISRFHGKPLEIRPGMLKYCCWVCFLILVFFLFVSLFTGSNATQGLSSEPLTTQ
DMINIQQNIGLSNNGMRKLGSALNQISPVRIVEANFQQKFAAAGTTLKSFFTVTTSQLPESNETRHIVHCTNLETLKENI
VSSRGLQNSNFLKLGIDGGGSFFKASLSLISEHEGEPHSPVQKKSKLITKDNFKNTSVQKQLIVAISENTPETYPNVKHI
LDLLQINEISISEKLVISCDMKLANIVCGIQSHSSKHPCCWCNIDSAHLENCGQLRTFGGIRDLYKKFVKSGCDAKRSKE
FENVVHLPMFAFPDRELILEAIPPMELHLLLGVVNHLIKYLVQVFPKTKQWLDSIHIQMQPFHGGHFNGKDCMKVLRKIE
ELMQLTIAEKAPDATKACQALSSFHQVVVSCFGYTLLPDYEAKICDFKDNYLKLPVSVTPKAHAVFHHVQQFIHQHKVGL
GVFSEQATEALHSNFKTHWQRFKRNSTHPEYSSQLLSCVVDYNSKKV
>Chapaev-15_HM#DNA/CMC-Chapaev 502-2539 via genewise with Chapaev-2_HM, 2 frameshifts, 1 stopcodon and 1 intron (1085:1159) [Hydra magnipapillata]
MPNHARSHDENRKVVCIMCLRKGNCQLTPFLVSKIQNNYKKQFNFDDLRIPXGLCDPCRPALGKCDQGQKVVLPKLFQFE
TIDIKVHTRGQACECLICDIGxLKLTEKHPLERTKTGEKTSDRRCSTCLSLIGQGLPHHCSSSQFHENLRELAKSDGIVA
EQIASSTIVSRESSPRGTIRLVQPKGGGPLPITQGPSCSKQLFEDSAVVTAKDLAQVQLNTGLSNSGIKKLTSTIRHVSS
AKVLEPNILHKFQDLGKSLEEHFTQTPTTFISSDQKKSQSVVVHCKNLQALTEEVLLSRTSTFXHIVKLGIDGGGGFLKV
CLGVIQNEADSEAVSPPNKRFLTSSTSKDSGVKQQLLVAVAEGVQENYSNVKLILSLISISEINFVVSCDMKLANIICGL
QSHASAHPCTWCAVESSNLANRGTLRTFRSLKQAHETYAAAGSDVEKAKLFGxVIHDPILSLDNDALVLDLIPPMELHLL
LGVVNHLFKILTDLWPESAEWLQALHIQPQPFHGGQFAGNDCHKLLKNFNLLQTLAENDSAFQVFSIIDSFRKFSPIVSA
SFGXTYAEKIDSFRDSYLALPRGSVTPKVHAVFFHVKDFIQKTRSPLGIYSEQATESIHHRFQNHWQRYKRPISHPDYGK
RLEMCLADFNSKSL
>Chapaev-12_HM#DNA/CMC-Chapaev 2062-4222 Via genewise with Chapaev-3_ACa (1 intron)  [Hydra magnipapillata]
MLFCDSMSCEKSIFRCVANKLGLVRQLSVSDAVELQSQLRMPTAEFRRLRRILCNLGARILPSEPKIRQEQEMRTMHVNK
EHVTVKSMLLYPSANEAPCLVSVLMVKNLTTYIEEVFNSLHVRDHLNSDVGFGEEVWLLFAGDKGGKYMKFHFEVVNSKS
SGSVYDVHLFCMYQGSDCRENIALVLGHYANDIKRIQSSDFKLKGKIVRLFLGGDFHFIDDVLGHQGSAASFPSSTDLVK
LNSLRNHASMPHTPANCNILRRTIQSLESAYNENLCENRQGGNLRALGKFHNSIIAPVIFPIITLDNVVPPVLHIMLGVV
LKLYKLLLKECKTLDCQAVSSLSHNENVRTNELWAAKSVECSKTAEALRLLGNQFVDVANLQARWLAFNKNISELECISL
NSSNKKKTLSMGTHERSLYKALEDMKVERQAYHGNVFVGNHCKIVLRNHYKLCSVIDDEAIKNRFVRVFSVFNKLQPILF
KRKFLSDAEITELHQYINLFAIEFHACFPKESITRKMHELIFNVPLFVKLHKTIGLLSEEEGECLHNSVNKELRQLHSVR
NQEQKLHLVLKRFELHSKADRKLQASKVRKCVVCSERGENSFYRQGLCLVCGHQI
>Academ-1_DPu_tp#DNA/Academ 533-5460 via genewise with Academ-1_AP_tp#DNA/Academ, 6 introns (879:941, 1526:1582, 1933:1979, 2537:3085, 3572:3627, 5187:5244) Probably misses first exon. [Daphnia pulex]
MCPTKTSIVLRNKCCQIIVLMIMISRQIGTRNNLKIDNTACIFCKINPKHNEKENISYVQTLDFKQTIIKKCKSRNDSWA
NEVLANVICIGDLFIHKTCYHISCYQRFVKGKNKPMKRKSEQHVPGQNTDNERKLAFLQAVQYLEEMDEKLFTIKDFRNL
MGSYGCEPYSTTYIKSKLLDYFGCDITFFSSDGIHDIICLSASTEKILHAFYLKSEKNKLHSAEERKLRTMIEAAKIIIQ
DLKTINTNSELYDIFQKLESPKDALEFVPVSLQIFLTTIITAKSNQSKIASVAQSIMQLACPKTILAPLQIGLAVQLHLL
HGSRALIDILHSHGFCSSYNEVLKFERSAAVTSNSNMDISQESFVQYVADNADHNLCTLDGKGTFHGMGIIATITPCFKK
TNYIVPRKKVNFTSYVFLNKNNNFFYRHSIDYKILSTIKFRTLEPLFTEDRTTNLDLLWLASWSFKHERPGWQGCMDASL
SRNSHPGKSEVVFLPMIDMSASDENCIYSTLHFIATQAQNNGYSPILTFDQPLWWKAMLIIENADPSCRIKNIILKLGGF
HTLMSFLSSIGHVMAGSGIEEILSLIYAENTVPHMLSGKAYTRAVRGFLLLEHPSSGVSLHPKNNMYSIMMSGVSLDNLE
FINQSATIRKLKTIVLKNIENNSNCKTGKLWIQLLDMVSIMKNFIKAERMGDWMLHLASTLKMLPFFAATGHNNYINSSY
LYVQNMVKLAVENKNVHEKFLNGLHVGRRTDKLWAGLSHDHIIEQELMRSMKSTGGVTRRKGMEEIDRLNXWVLSRPTCS
KINSLMQNVIEVQLSTSEQHLELNNSRKKRDIADIHTLINYLRPHXPFIGGHNEVKNIATGVLSVGSVNVYEAKEIGNNI
IQKMSGSSIEDFTARKKDQCILMTAKSNPGANKKSVNIDPNLLFQMIIVLLTSKKEEYGTLTDYFKYELSXYPLSLFNKN
CVLRNANKSELAKEIAVMCTYDPGKEEISLQEELTFVLDGGWLLHRLSWTKQDSYIDLFSKYSDYVMKCYGKGTVVVFDV
YNGPSTKDMAHQKRTKEVGREVLFTNDMKINFTKEEFLSNQRNKQKFLIELGKLLDEKGIVVKHADGDADLKIVTTAMEC
AIAKNVVVVGEDTDLLILLIHYCKESNHNMYMKSESKSKKCGKLWNIKKIQDSLGKELCSSILFCHAFLGCDTTSKPFGK
EKCASLKLQNTNSDFKIVSKIFYESESTKQDIDTAGENAMCIVYGGLVIDGIDRLRYQIFQKKVNNAKLTKSIIPEELPP
TQAALKFHSRRAYFQIQQWLGKKLSELDWGWTINDGLFYPKTTDLQPAPKEILKMIKCGCIGTCDSNKCSCRKNDMKCTV
ACKRMTK
>gi|161870496|ref|YP_001599668.1| IS1016 transposase [Neisseria meningitidis 053442]
MRKSRLSQYKQNKLIELFVAGVTARTAAELVGVNKNTAAYYFHRLRLLIYQNSPHLEMFDGEVEADESYFGGQRKGKRGR
GAAGKVAVFGLLKRNGKVYTVTVPNTRTATLFPIIREQVKPDSIVYTDCYRSYDVLDVSEFSHFSFAETSFSYQSQHTFC
>PITT_08264.helentron   helentron ORF [Phytophthora infestans]
MVFSAEERREQHRLAVQRSRARESTEQRAERLRRQRERQQRARTAIGCKDQCQSNGEPHQSWLDGGAPTLRPVTKSGMLL
SKRGVHPAGYIQVCGECNTSLAKQLLPKFAIKNGFYVGSLPSHLASATLPERFMTQTVSIVAVTRVMRGGAHRAIRSHCL
AFDSMPGPAVTLLPTSARNISCYRVLMAGPFTTEQQARIRQMHLVRRQLVEDLLAFYCEYNALYEDVAINCSGLAVETVA
EHLISEEIDVDVDVNDIDAESNRVGSVARSCGTGGETDVVEHSVVFITDDREVITQDISPTPVQVVELPTQNTSQPQFLV
RHSSRFAGKKNLLLARMFPHLFPYGRGHPNEQRRIPVSLEACIRHYSQLSTRRFAEDELFTLVSFDHLTLQRMYLHVALK
CQRDPARFERYSAISEASLIEALQKKELHRQGRATAIHDDSSGDSDFLKTVEISSGVVWGSDAERAQCRRRAFAYQARYG
QPALFVTFTPNVAESFVMAHYTGISSVDTLFDFNLAELPRRSALHSASLRNDVASARLFMHNMDAFIEHVLGTPPKQMKT
KAFDGLFGDVKAYFGVVETQGGGTLHAHFLIWLANAPPNTDAFIQATAEHGDQYYRDIAAYADSIVSTSLPLDVAVSCHF
CGHSFDDLQALPIPPEAYESPNACRGSARAEPLLVQCPQCATKMSSQHVLRRAILQQRPSTWPPQLRTYSSEELNAAVHM
EINCRGSVGAAKAAVFHRDMILATRDSVDDTYGEHLRTLNAVPNRSEQREDDAFCDDNVAQAIMTLPPSVEDERWTPNAT
AFAVSMLVSMLNLHWWSHVGSCFKSSRVSAPGQCRYRFPRVRVASTSCTSAGVVLARRPPFEYINGYNATMMLAFKSNHD
IQVLIGGPLAALYLLRGSCAYMSASCTSLPLYDVLRELIQHDTHSCNLVELQEGESNVTFRAASFLDDFIFRPLSLGRTS
LYEFVMAWFRCKQSKSTATSDMFLIGHPLYSTHCIGHHQLEAVPVITGARMPYLDSKTPLELVVKRAQCALVHFKPFRTV
LDLVSEPANDAAWVDAYFQWESTRTSFIREVMANMDDYYHASTLAQEDGESGSNRIDYEADSDELIGSRNDIDGAVANMQ
CDNETSVDGGRIDDFCHVFAEDDAADGGSLPVFPTTRTGSLLSSIVHQELLGPTAESAARAAIDLGNDEREPGLSVAELQ
EWVKDPMSDEAESSLTGLPCGERRADGIELIQSALKSDGKWSPPNQQHGCPTPPLLPYPSINDVSTAFTLNRRQHVAFSL
IARALLRRFQQQERANIHKSADYRAHDFASRLRDDQLLMFLGGAGGTGKSRVVDAVSAFCSGWHRTNSLVKTALTGKAAT
LISGRTLASFLVRLEHAIKMKKFAPLDLLLIDEVSMMSKAEWVKLDKLLRRYMQIENIPFGGIHVVLAGDFLQMPPVKSD
PIYLDPIGKAKPNTVDVGGFELWRRFTVVIILDECVRFRDDPEWGEGCRNARLGHWTSAFVDMINARVVQATHDRNNVQH
LQDEAVASVVFVTPENSTRLAINNAFIKETAAKLPNDVYPFRVIANFKGALNGLSRSDLCYVLSLPDNRFGRMAPFLDLV
QGMPIQVTQNVATAKGIANGTLGKLEYVHFPAGTRYRLVRDGATSTVVQLPSQPPDYALIRVPRPHAVPIRPGLDPALFP
VFYTTEAYTKATIKLTPAPDGQPRYVKSMIVMDWKSTQPLVSKPTQTYLLVSWVTTRNGLIALKPLTPKLVEWLKPSDRA
LREEERLSSATLREFYLPLIADVEDQCRNRNDPQSRNEPH
>hAT-1_Mam_tp#DNA/hAT-Tag1 1007-2914 [Mammalia]
MVRPTSSIWKHFHTASYSEGGKXVICKYCQMKYAFPNATRMTKHILVCKKCPADIKKSFMGISEEDHDEESASSSFQRSR
SRSPPAAASVTSASSQRVAQSTSSSNQILQATVYKKLSMASFVDKMTPEDQEKIDQALARAIYSSGTPLSITENAYWQEV
FKLLRPSYRLPSRHSLSKPLLESEYERVMESVQGRINEALCLAVLTDGWTNVRGEGIINFVITTPQPVFYRSIETGENRH
TAEYISCKICEVLQKTGSGKVFALLTDNASNMKAAWEIIMDKXPHITAIGCASHGLNLLLNDIMKLDTLQKIYRRAKEVI
KHVKATHIVAAVFKKKQEEKNAKNKIVTLKLCSKTRWGGVVMSFESLLKNKEALQETVIVEDLKVPRSVRNTVLDEDVFW
VQLQNSLKILKPISSAITASESDSALLSDIPYQMAQIKSTVFENLSVFPLTSTEESKVKDFIKKREEFCCQPIHAAANLL
DPRFKGRNVSDDSTATAFDWITKQAAHLGLDVGKVLSNVAEYRTSSGVWSRNAVWDSAKHIPPATWWQGLCTTQPLTPLA
SRLLQIPPSSAACERNWSMFGNTRTKSRNKLTCERVEKLVSIRANLQFSEVREDDKNEASEEAETADSDSSENETD
>Academ-1_CTe_tp#DNA/Academ 822-3924 via tfasty with Academ-1_AP, 4 frameshifts and 5 stopcodons. [Capitella teleta]
FISPILMSIAVYLxHRFSSKELICLLNSLGFSDDYKEVQRLLSAIVSNDQPSYQLDGFFQFVFDNADFNVATISGHNTFH
SMGGIGCVTPDSGRSRHTIKRSTKLVKADVTGEFGKVAIKAYKKPFVSALSCIKVSSLFPDELNPRSQKLSFALDQLWMA
SMTLPDANLGAPSPSWGGFMQLASKGENYERTRIEILPFINRQPTNPSSIYTALNFAREQSSLHGMETCFVTFDQPLYAK
AIEIVASDEILQGVVVRLGGFHLLMSFMGSVGYIMGGSGLEVLWESVYAPASVVHMMTGHAYARALRAHLLTSAALFTFM
MTEMEDKTKESLSALHKAVIGQKPVDLEDEKVMQTLIEKNQQWIKTEKERSRTGRLWLNYMEQVSLIKQFIYAERTGDWA
LHLNSIRQMIPYFHAAGHLAYAKSARIYLQQMQALQSTMNETEFGKFTKRKDNLWGGIFSDQSIEQNLMRLLKTSGGMTR
GRGITDSSLAMLVHAFPYCIPICxDLEAFANVRTQRSEQHKDIRDCSTSADHQDLNIFLEWLKSHSPFIEHQNQDSLTAI
STGLVVADSSVNCDRSLEIGMAAASALDNQLYSEXKLRRIGRVxSIGSSTNTVKIRGQPTVVNLMLLFNRITCVMQFSSD
MEPYLAYELAPQPTTLFDRRDGVMRKTNKNIFGQLLKSQTEAIDHYPVNSTFIVDGGxLLHVVLWPTHATYDEICRGYTS
FVLRHFGNALVVFDGYETTLSTKTTERNRRMAKGIPREIFFDGTMTTTVSQESFLANRNYKSRLIGLLRDLFKDLDVRTF
QTDSDADATIVxTALTDSTDGQTVIVIGNDTDLLVMMVALATPSMNVYICDTTKGLQSIQYKSHREKHRRNVELSSSLYA
EKPETPKAEIENAREEFLLKLYGSNKLGSTLDKLRHYKYKQAIEKSSLTSTIKLESLPPTSAAAAQHSLRAYHQVQTWRG
KMVDATAWGWQIGDGILAPVETTKGVVPENLLKMVACGCKTQCRKSCGCRKLGLXCSSTCSHCEGESCSNRLEDL
>Academ-1_CSa_tp#DNA/Academ 1272-6114 via genewise with Academ-1_AP_tp#DNA/Academ, 3 introns (4970:5059, 5408:5468, 5677:5766) [Ciona savignyi]
MSQHQTLFIVQNTDAEDVSKCYICKESTEVESQLQKVNVKTWKTIRNAAALRKNLKSDKYFDITRNILASDDSSTLSYHP
SCHKCYTAVKRPKEPTSLNDEPAAKITCITTRCSNVFPKCDRQGMLKGSCIFCGKSRKKKNRKEEPRLKIATVAGCESLC
ERASVSKNERIKSIIRSGVDLIAKEAEYHKSCRLAFLRESDTKSKPTEEKSSLSFHKKAFKCLCSFIETEIIERRRCILV
ADLLAMYKDEYNSCGGDRADIRTYTTQNFIRKVKDFFKEEIKIILADQRKGNFIHSSSLSKEDARSRLHKDAKRYEEDKK
LRCAALYLRSLIMQLPKTKNPNPATVQNLKECSSEIPEQVDLFFRSLLGGVTPSFSGTRRETIDRKVTSMASDVIFNVTN
GTVKPWKHTAMGLGLASLTGSKLVMQILNRSGHCISYSEVKGLETELAYSVEGDTHDAPDGICLDPNLATACVWDNNDAN
IETLDGKGTLHATVGHTYQNVIQGDQHTNTTIVAFREVRHRRSFVGNEREIPPFGKSIHKANFLSLTTEAHVDTDVSSTQ
LESDDGYNIRLNLLDLYWFWSSREDSTPLHAGFMSNYIQDKLPLQRICYMDPISKSPTNNDVVRETMIRTMNVAKETGQD
FAVVTYDLAVAIKAYSIQAIQTPIFDKLLIMLGSFHIELAFYGAVGTLINESGIEYVLTEADVLAEGSMVGFIKGRFYNR
CTRIHELLANVLEQKMYKRFLLEISQDDFDSFQQVMSTVPLDPILAKEHLSHPVVTQHLRIYENYFQTILDGNLGSTAQY
WAIYIYLINRLHRELQRCVKTNDVDGYVNVFPQMLDVFFALNRPNYARWGTLFLRKLKSLDPKVREILQNGAFSIRRTSK
DYSRSAVDLSLEQTVNRDSASTMKGIVSFRNSVNAMRRWSLTMTQRSMAVTELRRLTGLEFGESAAAQCRPSRIKKDNCH
MAALSAKVDLFGNPFAEDAPISLVNIATGHVASKDTESYLTNTLRRGQDKKEKFQHEWNSNSNRFLQPVKRTPVQNFASQ
NLKQKAKVPSSQKAKTTAEGLRDMFLRMIVVVAEKTAFDLRNVISYPITTYPLSLAHCDGAPVKTDKSALLKKLESLQTE
IFTEADLPTTYLQVYDGGLLLHSVLSQTNIGASYASIAHNILSVVFSGRANEAHVCLDKYLECSIKESERRLRGAVGSAY
VITGPNQTIRQSGQKLLTNGKFKNELAKFLLQEQHHINVTNPVHLQADHEEADTLIAFHIAKTTITGHVIVRASDTDVLV
ILIGALGAQRQEVRCRANIVMDCGMGKSRRFINVTNIVHVLDERQPGLSRALPGYHAFTGCDFTSAFYRKGKTKPFDLLE
SDKSGCYVNLFIGMGEVQRIDFDVASEFVCRMYGQSEIRDVNEARYNKLLQMNGKLDQGNPLANIKRVDCALLPPCIRTL
EMKIQRTKYIAGLWMRAATASPTNGLVPTDYGWCVENGIFVPIWFQGPSIPDRLFEDRNAEDIAETDSQLIIEITDEAWS
EDSDSDADEEEEQE
>Y4QI_RHISN/145-350 transposon family T25 Pfam:PF03050
KVLIGEDRSERLDVVPPKFRVIVTRRPKYAFRGRDGVVQALAPAHLIESGLPTERLLAYIAVSKYADGLPLYRQEAIYLR
DGVEVSRSLMAQWMGHLGFELQMLADYILERVKEGERVFADETTLPTLAPGSGKTTKAWLWAYARDDRPYGGTSPPMVAY
RFEDGRGADCVARHLAGFSGILQVDGYSAYTNLAKARAKTGSNETI
>Q9SHS4_ARATH/20-169 transposon family T24 Pfam:PF03004
DSHIWKAMCEYWDTEEAIARSKIYSKARLSDRNGLGPHIHLSGPKSYQNIKHELEKELGRRVTVGEVFIKTHTKPDGTYV
DKKAEQIVKNYEKKLQEKLSEMEAETSNVSDGESRPRELTIEDHTVIFLEVTETDTRGNYYGVGSLKDNL
>Q97YR9_SULSO/1-202 transposon family T29 Pfam:PF04693
MNKIPAIQQYYHALKETIQLLADPMTDVRKDTLAKLVLGGVMGGTATEIAQVIGMDYETVLKNLDKLANVNLIKAVKEIV
KDHPVLLIIDDTHDHKEYARAIPVSRNGAQVFYCREHKRYEPAIQLLLITVKDLRTNEAYVVTIIPYIPQKVVEVLRERG
EEVEFKTKIQEYLEILPVLEKEFSVVCKVFDSWYVSMGISFF
>O07796_MYCTU/17-323 transposon family T2 Pfam:PF01385
RFTLDPTEDQARALARHFGARRKAYNWAVATLKADIEAWRVTGIGTVKPSLRVLRKRWNTVKDEVCVNAETGAVWWPECS
KEAYADGIGGAVDAYWNWQNSRSGKREGKTMGFPRFKKKGRDQDRVTFTTGAMRVEPDRRHLTLPVVGTVRTHENTRRIE
RLIATGRARVLAISVRRNGTRLDASVRVLVQRPQQPNVAQPGSRVGVDVGVRRLATVANEAGAVLEEVPNPRPLDTALKE
LRYASRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHVLTTRLAQTHGHIVVEGLDAAGMLRQ
>Q97Y34_SULSO/1-326 transposon family T29 Pfam:PF04693
MTKELTREEYYKALEKAVNEVILSMTGTRKDVAKRLVLGAVVGRNATEIAQEAEMDYETVLNNLDKAAQAKLIEVVKKLV
GDHPVLLIVDDTHDHKLYARAMPVSRNGAQIFYCRAHKRFESAIQLLVIGVKDLVNNQIYVIHIIAYIPRKVEEELKRRG
EEVKFKTKIDALLEFLSSLSGLNVKSKVFDSWYVNSRTLQGNTVGELKANARVVEGGRSVPVGEFPQGEYLVEYLGTPIK
LLVIDDYKGYGRRYFFSTDLNDTAEDIITTWENRWDIEVLIRELKALGLEGGSFLTWVRNSGFVALKALSLLVVQYFKYS
TGLRLG
>Q9XEB3_ARATH/262-334 transposon family T23 Pfam:PF03017
KGSKQKCFLLDIDNSGKKVAVGRVSSIDPAEKVHHVPLGSNASKVWVEVSKVDGARVWRPNSEVTFIADAVGT
>O69923_STRCO/250-333 transposon family T20 Pfam:PF02371
PELLELQGVGPITAAQVLVSWSHPGRFRSEAAFASFAGVSPIPASSGLTNRHRINRSGDRQLNRALHTITLIRMRLDPAT
KTYV
>YM3_STRCO/281-365 transposon family T20 Pfam:PF02371
EILLSFPGLGPLLGARVLAEIGDDRSRFTDARALKSYAGSAPITRASGRKHFVGRRFVKNNRLMNAGFLWAFAALQASPG
ANAHY
>O52279_9RHIZ/125-207 transposon family T20 Pfam:PF02371
DILVSIPGVSQITAFTLLIEMPELGELDEKAVAALSGLAPMSRQSGRWTGRAFIAGGRAIVRHALYMPALVACRFNPQLK
TKY
>YO11_MOUSE/22-379 transposon family T22 Pfam:PF02994
QMAKGKRKNPTNRNQDHSPSSERSTPTPPSPGHPNTTENLDPDLKTFLMMMIEDIKKDFHKSLKDLQESTAKELQALKEK
QENTAKQVMEMNKTILELKGEVDTIKKTQSEATLEIETLGKRSGTIDASISNRIQEMEERISGAEDSIENIDTTVKENTK
CKRILTQNIQVIQDTMRRPNLRIIGIDENEDFQLKGPANIFNKIIEENFPNIKKEMPMIIQEAYRTPNRLDQKRNSSRHI
IIRTTNALNKDRILKAVREKGQVTYKGRPIRITPDFSPETMKARRAWTDVIQTLREHKCQPRLLYPAKLSITIDGETKVF
HDKTKFTQYLSTNPALQRIITEKKQYKDGNHALEQPRK
>Q9SKF6_ARATH/465-681 transposon family T21 Pfam:PF02992
AKMRWHAQHTTADGEITHPSDAKAWKHFQTVYPDFANECRNVYLGLCTDGFSPFGLCGRQYSLWPVILTPYKLPPDMCMQ
SEFMFLSILVPGPKHPKRALDVFLQPLIHELKKLWYEGVHTFDYSSKQNFNMRAMLMWTISDFPAYRMLSGWTMHGRLYV
PTKDRKPCWFNCHRRFLPLHHPYRRNKKLFRKNKIVRLLPPSYVSGTDLFEQIDYYG
>YDCM_ECOLI/8-277 transposon family T2 Pfam:PF01385
KFQLRPGGQQECEMRRFAGACRFVFNRALARQNENHEAGNKYIPYGKMASWLVEWKNATETQWLKDSPSQPLQQSLKDLE
RAYKNFFRKRAAFPRFKKRGQNDAFRYPQGVKLDQENSRIFLPKLGWMRYRNSRQVTGVVKNVTVSQSCGKWYISIQTES
EVSTPVHPSASMVGLDAGVAKLATLSDGTVFEPVNSFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKIQRLHSCIANIRR
DYLHKVTTAVSKNHAMIVIEDLKVSNMSKS
>Q9HKN3_THEAC/307-371 transposon family T35 Pfam:PF07282
YRLFQMFVEYKSKNETLYVDPEGTSSECPVCGGILEHPIWKMSKCDNCGATFDRDRLSSLSIAVR
>Q8DGA6_SYNEL/12-78 transposon family T35 Pfam:PF07282
AGRVWQMLSYKAQKLAMKTTLQNEAYTSQECPVCLHRQKVKGKNYHCTNCGFKYHRDGVGSINIRRK
>Q9HSD4_HALSA/268-335 transposon family T35 Pfam:PF07282
FARLLNCIEYKAHDAGIDVQLVNEYDTSKTCNRCACEGVRATQGRFECPECGLDDNADKNGALNIGKR
>Q96Y41_SULTO/205-272 transposon family T35 Pfam:PF07282
LRNIEIELEQQLYSRGIKYKLVDPYNTSKICSNCGFKKGEVLGPLFVCPACGFKADRDFNAAYNLALK
>Q8PYT5_METMA/280-348 transposon family T35 Pfam:PF07282
FYQLAQFLEYKVETLGKRVIYVDPRFSSQKCSKCGDIRKSNRNGSSYHCRDCGFQIHADLNAALNIAQA
>Q8X9R9_ECO57/10-120 transposon family T34 Pfam:PF05717
TPDNVFLVVKPVDMRRGIDTLTQYVQNELNAAWHDGAAFVFTNKVRSRIKVLRWDKHGVWLCTRRLHRGSFRWPRKGDAT
WHLTQDEFHWLVFGVDWQQVKGHDLAKWVYQ
>YTL2_SALTY/3-291 transposon family T31 Pfam:PF04754
KKNTTPTPHDATFRQFLTQPDIARDFMELHLPAELRAICDLSTLKLESGSFVEDDLRQYFSDVLYSLKTTAGDGYIHVLV
EHQSTPDKHMAFRLIRYAVAAMQRHLEAGHKKLPLVIPVLFYTGKRSPYPYSTRWLDEFDDTALADKLYSSAFPLVDVTV
IPDDEIAGHRSMAALTLLQKHIHQRDLAELVDRLAPILLAGYLSSSQVISLVHYIVQAGETSDAEAFVRELAQRVPQHGD
ALMTIAQQLEQKGIEKGIQLGEQRGIEKGRSEGEREATLKIARTMLQNC
>YFCI_ECOLI/2-274 transposon family T31 Pfam:PF04754
TISTTSTPHDAVFKSFLRHPDTARDFIDIHLPAPLRKLCDLTTLKLEPNSFIDEDLRQYYSDLLWSVKTQEGVGYIYVVI
EHQSKPEELMAFRMMRYSIAAMQNHLDAGYKELPLVLPMLFYHGCRSPYPYSLCWLDEFAEPAIARKIYSSAFPLVDITV
VPDDEIMQHRKMALLELIQKHIRQRDLLGLVDQIVSLLVTGNTNDRQLKALFNYVLQTGDAQRFRAFIGEIAERAPQEKE
KLMTIADRLREEGAMQGKHEEALRIAQEMLDRG
>O88118_ECOLI/6-115 transposon family T34 Pfam:PF05717
SGTKIWLVAGITDMRNGFNGLAAKVQTALKDDPMSGHVFIFRGRSGSQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGK
VFLTQAQLAMLLEGIDWRQPKRLLTSLTML
>Q9A1R8_STRP1/7-115 transposon family T34 Pfam:PF05717
DLGQVYLVCGKTDMRQGIDSLAYLVKSQHELDLFSGAVYLFCGGRRDRFKALYWDGQGFWLLYKRFENGKLAWPRNRDEV
KCLTAVQVDWLMKGFFISPNIKISKSHDF
>Q8KJ94_RHILO/6-117 transposon family T34 Pfam:PF05717
GVVKVMVATKPVDFRKGAEGLAALVRETMGADPFSGAVYVFRAKRADRVKLVYFDGTGVCLLAKRLEDGKFCWPAITDGV
VRLSAAQLQALLEGLDWRRVHDARETRAPVAA
>RETROSOR2_p3#LTR/Gypsy  10579-9281 ReverseORF [Oryza sativa]
MLLPKPTLFLRMKFVTCAAGIILPRFASCDWWLYIFFSRAERNSIGLSLRGLFTVPLGWWEFTISPTLATRIALLLVGRR
TVAQVSYKFPPLFPFHRHTCHFTVGGLFLHFFLPRNLLTPQAFRPFSFFAIANAPFAMAPRRPNPASAKGLDPGRVDDDS
TAFLGVSLMDDVELAKLVSSGALVEGQAFALGKAMVLKPIDNRTVVFAIFFEAGLRYPYNVLLPEILRLFQVELPQPSPS
ALVRTAIFDWACRTSGFEPNAELFGAIFFATVNSKTVITPAGTRKTVFGSVNFNVRPERSDLWPVNAAMSKWDRHWMARW
FYHTIPFEAGSESAKALRCRRRAIAPNRKPKIAVDGATEARFVLLRKACSRLSCRDLVEEFCMLRIFPLSQSWQVTVEQS
EEVDSLPNLVLPKGTNSKTVVLLYSCALLFCLV
>ERV1-10_AMi-I_2p#LTR/ERV1 2052..5615[Crocodylidae]
MQVGGELIDFLVDSGATHSVVTNFKGPLSKTKIPIVGATGQRTHRPFVPPMECKLGGKXVYHQFLYMPECPLPLFGRDLL
CKLQAQLTFSDEKITMKIPTEEAWKAQMCLLSQRGEEGRIPPEVEDAVVPWVWAGEKPGRAKLATPVRVDLKSGVNPPRV
PQYRLKLEAWKGLEPLIKRFLEHGLLRECQSSFNTPILPVKKPHSNEYHFVQDLRAVNKATVTLHPVVPNPYTLLATLSA
KDRWFTVLDLKDAFFCIPLEKGSQEIFTFEWEDPNTRRKTQLCWTVLPQGFKNSPTIFSTALSTDLQKWDKGPSGTLLQY
VDDLLIAAATKEECHRLTVSLLNFLGQVGYRVSRKKAQIKQEKVRYLGFDISQGQRALGPERKEAICRMAVPRTKRQLRG
FLGMAGFCRIWIPNFGLIAKALYEATTGSEGDLQWTAECRKSFDTIKQALMTAPALGLPDLSKPFQLYVHERQGVASGVL
TQHLGSWKRAVAYFSKQLDPTSLGWPACLRAVAATAMLVEESKKLTLGQPMTVYTPHSVLAVMNAKGGTWLSPGRMAKYQ
AALLDQGDINLQTSSTLNPATLLPXEQDEGLQHDCIETIESVYASRPDLKDAPLPNADLELYTDGSSFMDNGTRRAGYAV
VTSWDTVEAGALPPNTSAQRAELIALTRALHLAKGKTATIYTDSKYAFGVLHAHGAIWKERGLLTASKSPVKHGTEILKL
LEAVMEPVEVAVVHCKAHQKGDGEVIRGNRRADAAAKGAAREQVQETPILALVPQVVLPEEPPKYTEKENQLAEKLGSKE
QRDGWWVLPEGQVLVPRLILSKVLQEYHQSTHMGADAMTQGLQRIVVGPKMRKTAEQIVRRCPVCCANNPKISPKPPPGA
GRQGLLAGECWQIDFSEVPRKGHYKYLLVLIDTLTGWTEAFPCRTNQAKEVVRVMLKEMIPRFGIPEGLASDRGPHFVSE
VTQGVSRALGIQWDLHTAWRPQSSGQVERMNQTLKRQLAKLCQETQLKWPEALPLALLRVRIAPRAKLGVSPFELMYGKP
YPKNPVVTHGSQMHVKGEGWVKDYLYSLSAVLSSLHRYVQERLPLPLDTPVHKFQIGDEVLVRTWKDEPLQPRWKGPYPV
ILTTHAAVKVQGVKPWIHYTRVKAAPEVPPAGEVAESVAPEADTNGHRWTAEPVEGLKFLFKRQPCGK
>ERV1-9_AMi-I_2p#LTR/ERV1 5106..6413[Crocodylidae]
MEPVNILIVFLCAAFVPSRAQVVQIRTQMPEVNNTHIAMVKSLKVSLNLSNCRLCSHIPLYLEQGLPLVGVSWTAGDWCW
EMRGYDLNVSGCEKYPDTIMAGQPFKPAMPQHFSGWARPPSLALSYTTGGYICHRNNDGNISMGSSQCNHTLDCQTNVTA
DGIFHYFAPETCDMSLARIAFGGSYFICGKKAYKWLPPNWKGSCYIGVVIPGIRVRPRLGGRVRNKRTVHISALTSLPYI
NDVQGTFGSAFPWYGAAKAMRGVNALSKSFEKFANETIGALKDINLEIYATRLVAMQNRMALDIILASKGGTCALVGNEC
CTYIPDKSQEINEHIQSMEKALAEFEEGKDPPASLSFWGWLPNVNGWIREMLKYLIIGAFILIVGFVCVQMIIRCCKLCK
TTATRQARTTGIQLMIMKEIEKKQEREEEIKESYGY
>ERV1-10_AMi-I_3p#LTR/ERV1 5875..6879[Crocodylidae]
MWGTITTERNASTFEIDLLTVTSPGNTSCANFVNCTKACKSLTKETKIFNCSDVTNVSCNYGHVVLPRGWFLLCGKTAYS
YIPANATGGPCALGRLTVWLPGMPKTSSKRHRRGLNVLDESCDSDINLLSKAEVVSLAVSIVGVPGLAVDAXRQLSKVAC
ALAKGLNTTSQALAALNTEMKELRGATLQNRAAIDYLLLRHNHGCEEFEGMCCFNLTDNSELIESKVQKLKXVLSHIKQG
EGFDFSWLTSWLPNFSWLKQIFLLIVASICIFLMICCGVQCVPMCCEVLKKSISSPVHRVMFVKPSVTNPIQKNREGAKR
FLKMKRMVEDYGPIP
>ERV1_DR_env#LTR/ERV1 6240-7532 [Danio]
MIKIAVLGIIMNIAQAIDSRSNIFLELMNMSRNALFAGKNICMPHPPSVGAGIPWVAHPMSNCDTCTLFGVHTSGIYNKS
TCHNITTPPATPCCIPGLPSCNLTSATPIMTDLLLPIIFSWCVENNAPSSTPLGKIPRERCNFVIEMRTGSHVDITPSAG
IREKNLEACLHGTRSLPKLFAVNQWCMIPPPTGTFWLCGTSAYDILPSQFNGRCTLGYVLPAIRENTHATPSSLHLHNSA
PTTKEEDGCIPGLTCAQTWWSRTLGAIIPSYGVMQALDQVRSLSNSVQKLANDTAFALGNITNTLASHKIMILQNRVALD
YILAKQGGACTIIGPECCTGLMDPTKNLNKIQQDILDLSVKLHRMTEDNSSWFGNLLGKPWLWIKEIAILLLLFLLLYYL
CIHSIKCFTQHLTHAHDEEMTVPTRTEYYL
>ERV1-12_AMi_pol#LTR/ERV1 2306-5968 via tfasty with MdoERV3_pol, 3 frameshifts and 1 stopcodon. [Crocodylidae]
IAPLLSVDQSGPYVNCSVAGKPVSCLIDTGASRSTRKAADFPFLPQSSETVSAMGIGGQPIPHPVSKTVSVSIGPLSESH
AFLLSLCAPVNLLGKDLLCKPGCIIYCNPDGIYLEIPEPRETEITALLTEGDPNADPSLLQQELLAQVPPQLWSTHANEV
GHKLSAEPVHITLKPAKPLPCVPHYSISKEAEEGIRPVITSLLKQGIIVPTRSPCNTPILPVKKPGNNVYRFVQDLRAVN
STVLPTSPVIPNPATILSCVPSDATYFTVVDLCSAFFSIPIHEDSQFLFAFTCQGLQYTWTRCPQGYTESPTLFSQILKR
DLDSVSFNGESTLIQYVDDLLLASPTLEACKQDTLTLLTALALRGHKVSKSKLQLCLPRVHDLGHDVLAGERRLSSERIQ
AILKIPRPKTKKQMRGFLGSAGYCRQWILGYAALVKPLQTLTHDDTPGPLPWNEEAEHAFVHLKQALASAAALGLPSYKK
PFTLFFQExEGIALGVLTQLRGDKHRPIACYSSALDPVAAGLPPCLRAVAAAALLVEKADTLLLGHSLTVAVPRAGMALL
LKGKTQHIPNSRLTKYEKLLLSAANVTLSRCSVLHPASLLPITSDGEPHDCLSVTAQRLTPRIDLKDVPIPNSDLVLYVD
GSCLRNTSGQLVAGYAVCTRHAVLGADSLPPARSAQAAQLFALTRACILARNQPLTIYTDSKYAFGVVYDFSQIWKQRGF
LTSSGTRISHGCYVNDLLEAIQLPSAIAVVKCKARELPSDDVTRGNDLADRSARRAALSGPQAPNSVPVRLSAVQSPLAS
PSDLAILSRSGSDQEEKDWLHAGCSLHPDSLWRSPDGRLGAPRELLPHLAHLTHSVAHTSKGGMIATKRLVCPNFSSMAQ
QYCSSCPTCLAHNTGQRVKTTPAVHPPPRGPFVNLQIDFIQLPRCCSYEYVLVIVDMYSGWAEAYPCAHADPITVAKKLL
KELIPSLGLPLTRDTDRGTHFTGQIIQDICKALNTQQHLHCSYHPQSSGAVERKNSDLKTRLSKICAETGLKWPDALPIA
LMHIRNTAKRKHGLTPHEILMARPMRLPATPPVAPHQIHLHLTVETVLNYCKALMKCVQSIHSQVQEALPQPPDVPCHDL
QPGDWVYVKVHQPKDALQPRWKGPFQVLLTTHTAVKCQGHQTWTHASHCKKVLPPLDPDAPAFQPSKHPAATNQDSQHTK
EKTSEESPRYNLQSRTRNTRGQ
>ERV1-7_Crp_pol#LTR/ERV1 1953-5354 via tfasty with HERVP71A_pol, 6 frameshifts and 5 stopcodons. Maybe too low quality to include.[Crocodylidae]
MVKIRVGGKNYEALVDTGATFSVLPEEPPPGGGSGKYVTVEGIEGKQSKLPMCRPLLTKVGDNLLEHAFVYSPACPVALL
GRDLLTKLQAEIFFRGDQMAVQLPVKQGSNYQMALLGGESSAVGIEGLENVNPQVWADGTPARAKHVMPVRVRLKEGEGP
IRVKQYALNRQTRRGLKPLIEKFKGYGWLVEGSSPFNTPILGVPKADGTSYRLVQDLRAVNQKVLADHPVVPNPHTVLTQ
VPPNAKIISVLGLVFFxDAFFSIPLHEDSQRLFAFEWEDPDTRHKSQLMWTVLPQGFVSAPHNIFGISLQKDLEDWKQVH
PDFTLIQYVDDLLIASPSLTKGKEATESLLNTLGERGYKVSREKAQICQSKVTFLGYEISKGARALSHDRILAIQNMPAP
ASPRELRAFLGLTGFCRYYGGKAKALYDSLTKEGLADWKWTKGKQRSFELLKAALVQPPALMIPDGCKPYRLYVHENKGV
ASGVLTQPVGPTWKPVGYYSKVLDPVARGWPACLxAVAATATIVEEAQKIVMGTDMEVHTPHGVPQILGGEGGKFLNPSR
QSRYEIFLLSNPGLTFxAYNCLLNPATLLPEPGRPNHDCLEVLTQAILIRPDLTDDPMENPGxELFVDRSSTMVDGKRHT
GCAVVTLEAVVWKETLPSHWSAQAAELVALTWALELGEGKxVNIYTDSRYAFTTVHAHGVLWKERGFVTASGQKIANGVQ
ITRLLKALKLPREVAVVHVRAHGKASNEQQRRGNAKADVAAREAALMGGEAHTQALSLSQHLLFEDRTPHYSVEEERMAK
DGLATKNSEGWWIVPGGKVIIHRPLLRELLMQLHSMTHMGGLAMGDLLIRQIVSPRLYLESQRVASQCLTCQKVNPKPVG
PPTPMGGRQWAHYPGQAWQIDFAELPKSGRHRYLLVMVDQLTGWIEAFPTRTATASVVARTLLNEIVPRYSLPESIESDQ
GGHFVGKVTQEVAKALGIRWKLHTPWRPQSSGQVERMNRTLKAMLTKICIETRLKWPQALPLALTRIRNTPRRGIKLSPY
EIMFGMPPRVLPPGAREAVTFELGIAELRAYVIALQSVLTSLHRYTASFQRLPLDAPVHNFQPGDQVLVQQWRREPLSEK
WEGPYQVLLTTHSR
>ERV1-3_AMi-I_1p#LTR/ERV1 930..3728[Crocodylidae]
MPRPPIPPDPFIPVPAGDSGNRGEASPRLPPGDHPSPEPVDGSRHPSPDSTSPNTDPTPIANRTRQRVPAPSLLAPLREY
PVPGXGGEVISHWKHAPFSTTDLLNWQENTPRLRDDPEVFEGLKKAGDKTTNWSKVTATVQGPEEHPSDYFERLCKAIRQ
YGNMDPETPATLPVLRLVFISQASKDIRKKLQHNTEGVESKSMAEILAIATKTFNGREEKRKKKNKRKTSPTFAVGSGIQ
CQIPEVTSLLCSLPQKMQKNQSFEIIKLPAAYFSAQLDPVAKGGVGCLRAVAAAATIVEKAQELVLGYPLILKAPHAVAL
LLLQKNTQHFSHQRMNKYETTLLMATNLVIERCNTLNPATLLPLPSDGEPDSHDCLQVAAFSDKPRADLSDLPLDNPDLI
FYVDGSSKIVNGVRKTGYAVVTPFEVLEAEPLPEQLGAVADCGFQLVPCPGPSPGCFCFFSENKVVKKDRIWRLPDGRIV
LPKAALKPYLQQLHQSKHLGCKKLAAITNRLFYAPGVYQEAKRLLEHCSICKKFNIKGEKSGPPGARPWAYTPFERLQID
FADMPKDNGYKNLLVIVDQLTGWVEAFPTRRATAQQVVKILLNEIIPRFGPPRIIESDQGSHFTADINKTLASCLGIEWK
FHTPWHPESSGQVERMNQTLKQKIGKLCAESGLKWTKALPLALMSIRTTPRRKLKLSPYELLFGHPVPQHSPLLPAHTSS
LLGDEGLTSYILSLQSQLKSLHRYAALSQPLPADVPAHRIQPGDWVYVKT
>ERV1-1_Gav_pol#LTR/ERV1 2082-5256 via tfasty with ERV24_Prim_pol, 2 frameshifts and 1 stopcodon. [Crocodylidae]
MLSSDFVSKVPVSDKVITAVGIGDQSIDHPVTRPLSFTLGPLTEQHAFLLSPCASVNLLRRDLLLVRKPGKFTPEGLPVY
RFVQDLRVINNFVVPLTAVVPNPATVLSQIPASASWFSVVDLCNAFFSIPVHPDSQYLFAFTYQGRQYTFTRLPQGFRDS
PTIYSQLLKSDLDTVQLPHDSVLVQYVDDLLLCSDTLPHCQADSVALLEQLAARGHKASHSKLQFCRASVTYLGYTISHG
TRHLSPDRLSAILSLPHPQTKRQLRGFLSAANYCRQWIPNYSGLSKPLTLLTCDSSPDSLPWDESHESAFCQLKQALSSS
PALGLPDYSKPFTLFCHEHQGTASGVLTQPFGPSPHRPIAYYSASLDPVASGFPPCLRAVAAAALLVSKTDNLVLGHPLT
VAVPHAVLALLQRGRTQHLSPGRLTRYEVVLLAADHVTLVRCDPLNPASLLPSPSDGQPHDCTQLVDFVSLPRPDLSDTP
LTNPDLVLYVDGSCFRDSHGVLRAGYAVCSDHSVIESAPLSVSSAQAAELIALTRACHLAAEQSANIYTDSRYAFGVCHS
FRQIWKQRGFLTSAGTPISHHRLITALLDAILLPSALAVLWCKAHTVADDPVSLGNDRADAAAKTAALSELSALVLQATL
YLSSPVSPDLPSLQDAAPDAEKDAWISAGCSLHSDSLWRHPSGRLVAPRALLSLLAQMAHSVAHSAKGGMMAEVDRHWYA
PGFSAVAAHFCRQCPQCQRHNPGRPPRQPHTFHRPLGHYPFSHLQMDFIELPRSGPWKYVLVIVCLFSGWPEAYPCRxAD
ALTVAKKLLFDLVPRFSLPLSLDSDRGPHFIGQVVQHVCKALSIRFQLHTPNHPQSGGKVERKNFDIKLRLAKTCEHTGL
KWPESLPLVLFQIRNSVQRSSGLTPFEIVMGRPMRGLAALHPNICTHLHDSLLTYCQGLTKALKVISLQVKATASHQSLD
GDSVVNPVQPGDWILIKVHQRKDCLQPRWKGPFQVLLTTPTAVKVAEVSAWIHTSHCKKVSAPTGWKVSLTGDTSLKIQR
VPVSEDQTTKSRRVPVSED
>ERV1-3_Crp-I_2p#LTR/ERV1 572..2176[Crocodylidae]
MNLGDFNETSHKLECPSSEPYINLEVQGQIYKCLIDTGADLSSLGVSPSQAKLRVAKTERVVGVSGKPFSVPYSVPTKVT
IGPLTTEHAFLLSSGSPVNLLGRDLLCKLHATLQCSPNGIQITVPSTNLLAFQAMLNESERPSLPEDLQTLPESLWGWTP
TAVGLLKSATPVSIQTKPGQPPSVPQYPLSKEAEEGLEPLVTSYLEQGILKECLSPCNTPILPVKKPKPGPDGKPVYRFV
QDLRAINSYVIPRHPVVPNPATVVTTIPATAICYTVIDLCAAFFSIPIHPDSQYLFAFTWKKRQLTWTRLPQGYVESPTL
FSQILHKDLSAVTLSSDTALIVYVDDLLLASNSTESCRGDTAKLLSALAEQGHKVSPSKLQYCQPEVEYLGYILKAGTRK
LSPRRLRAIQDLPRPQNKRQIRALLGMAGFCRPWIPAFGEIVRPLVQATAKEAEDPVHWSKDKEQAFHQIKHALMTAPAL
GLPDYTKPFILYVHENRGVASGVLTQPWGDRPRPVAYYSVQLDPVARGAVXCLRSVAAAATLVQRAQDLVLGHPLIVRVP
HSVEALLLQHNTQHFSNQRLNRYEVLLLTSENITIQRCAQLNPATLLPKADEGQPHHDCCKLVEYVEKPRSDLKDQPLHN
PDYVLFTDGSSSVIKGTRHAGYAVTTVQWVWEAKPLAPGTSAQAAELIALQRACELTANCSVTIFTDSRYAFGICHATGQ
LWKQRGFLTSNGHSIANATEVNNLLNAILLPKEIAVVHCPGHSKDSTEIAAGNRMADAAAKAAAIQPVSDNSNSRLLCIT
LSSPTSIYQHLQPTEVQDWKTKYEGTEGTDGVWRVPDGRPIAPRAVLRTLAQGAHRLNHSGKRKSSAQCSPTTLVKENLA
RSVLRDWFAPGIYVEAARIVNSCPACQAFNHKTKKSIHKGGRPWAYLPFQRLQVDYIDLPKAFHYKHCLVVIDQLTGWPE
AFPASRADASTVVKALLRDIVPRFGLPEVIESDRGSHFTERILQEVYKALGIQAQFHTPYHPQSSGQVERLNLSLKTLLG
KICAETKLKWPEALPIVLFALRTKPRKPLNLSPYELLFGHPPPLYKDWQSPHVSLFGGDEKLTDYVLSLQQSLSSLHRSA
ALVQPVPLDTNLHPYRPGDWVWIKKHRRQNCLAPRWEGPFQVLLTTHTAVKVAEKESWIHHSHLKPGEEPTSPAPPEKQA
VPPLKLTKTVGNTWHVKSPLDAS
>ERV1-7_Crp_env#LTR/ERV1 6182-7146 Fragment via tfasty with HERV9_env, 2 frameshifts. Maybe too low quality to include.[Crocodylidae]
MRSYCINHCSLKDRSLFDSSRGSIFFAPTNDTSYKDPSLDPLLSATMAAQTLQAFVAKETRNGREVDLNPQRLYASAVFS
SVLSPASGVYWICGNRAYWVLPPGWQGTCSLGFVLPQIEVAPSGTPLPFQLQAEVILAKRVAPLLPLMAVVAVVAGATRM
ATGGTALGLQQELSQETAKALEKTGETLTLLQQQLDSLAGVVLQNRRALDLLTSDKGGTCLFLQEECCFYVNQSGQVQEN
INEILQHASNIKSVGWGGWSGGPIQWLLSLLLPLIPVLVISLVILMCAPHIIQALNRFISARMKTATQLQLVMFHKRQMR
N
>ERV1-6_XT_gag#LTR/ERV1 327-1724  [Xenopus (silurana) tropicalis]
MELINKFANQSNVIYKFMSNADTDSDLWHSLYQQCSEANTLLDRKFICPNRQRLKLRNILKMIQIFHNMVFKHDHSQMIC
SNLQRNDTENDMHECSNCNILMDHILELEQQIANADEVKLICAGRRAQASGQDEEGGEELEELNDAESAQQRKRQLLDKA
AKIKLKIHDQLMKILKDIPAYNLNKDTFINADILESNLNKYNLSDSQKNQIFKVWLPTHFSRRLVPPISEPIIEAGQTRH
GTKKDRLQQLVYLTTGEELPSLEVIETLKTSANEDPFAFLVVFEQAYRLVMGLKQDETPESMISTFVKKFKYLDPAAAVL
VSKMRTLEDAATFIDKYRRQLKLKPKIAEVTQVTNRVMSTPETGPKPFKRQGTSATGLHSLVCHRCQRKGHIRKYCRVPV
KDLPPKGVGRDNGVTSAASAPPANIPVARESPYAPLLRQVRELTINSGAQPVLNSQVYPEEVVNPQ
>ERV2_DR_gag#LTR/ERV1 718-2085 [Danio]
MFRQNTRLINTTEKGSLTTPSLSDQDFKSLLRQHMDSITESVRLNSTKKFSIDPDDVWTLDECKKVLDACIRKNNVKVII
CCYREFNLSRAKQQAQAKSELEKQIQELHAKITSLTKQLNLKKLKTDIEEVSQPDNKHPDLQIVSEKDISIQSDSDLPIG
SVEVCGATRSKRTESSHNNTSVVQIQTVSRTLGPKEIDRLSQSLPSARTNFSEFSRALISKMRLYDMSLTEVTQLMSQIL
TESEFNSFEHTVTSKLQHASKDDLREGVLKALKNIVGPKIDWSKVTCCVQRKDESVNEFTERFCQSAITYSGLADNSDSV
LDDKGPLVRIWSDGLAAEYRKALPFLNITWSSTTLRNNMNSLALWERDSYIKDRVRFEAAATKVNTEKTSNHKCLRKNIC
CHYCGKKGHWMRECRKNKKNFKEMNRVNQLLNSLLNALNIPLPSSLNPLSSPQRC
>GGLTR7_env#LTR/ERV1 5375-6402  [Gallus]
RNLTGIGCSWEYRNSGAVSGISEAGRWNQGXGCDPRIDKESHWLSDKNVLGIVGMGASFTXQEKMARPCQLPHGYWWLCG
DAQARKALPLNWTGTCTTGYLIAQTTVHEEIPRGLLRTPXIRTKRTYNPLAIYNKGYHXFLRALIPALGVAQLEKAIVNI
SATLEIVENATTDALRAIQEEVSSLSKVVLQNRMALDLLTAKEGGVCTIINQSRCAYINKDLRIERDLRKIWEQTKVLHR
TSQDDTSWEGDLXNLLTSWLPNLGWLKQLFLVCIILVLLVGFTCVMIKCSACLCRNTRKEYEIWKKHELRQKVESGSYFG
TXRTEWDXLAGRGPARLIEKGG
>FERV-R1_env#LTR/ERV1 7999-9882 [Takifugu]
MSTNLNPNTQHTPTLDTCALAMITLATHRGIVDRNNGEIKRIMHVKADTYDFVLTEEIVGTESMGKHWLGYPQSADCRGE
GTVIIQVRCAKTGCQNEQTGQSMTVKEAEIKVKLLNTRRKRDLNKLRTSHWDTNMFQQWIXYSAXSMFEAKKQEKQDCIA
CYNAKKLPQIQSIPGGELGGCPDITKCFALCAMHMAGGLPGWSDNRKVCPTLLSDDNYDVVGALPPVVHKPDNAIFPFCI
VRGRELEEVVQRASTILTDAGELVRXSRITWYPELADGNTTATIKLCKTGPKARIQCEQVVPNGGSVIYERNSSHIAQYR
LLDLKNGTRPLGDVFWTCESNDTMMPKLLMPNLPANWEGICAPLMLTGQLSLITQRXHQSHAPPRDKRSTQDSIENWEWD
WKATNEIYITWDQVPFGVPEDHVAIGSTWIKSGRGAGSVPIYGSIANAQYIARNSRWIHFLWYNQQRFMNYTIKGMTLVR
EQLHATSMMALQXRFVIESRMAGDQGMCDEIGEECCTLIPMHTGVNGSLTEVLNEMRRVRDEHVRNSNWNTQIKSFWDWL
GKLGWLKYLKMAGMVLGGIVLVVLLVVCCIIPLLRTLVSRVLVSITGQYPVVQVQIDPEPVELTGIRE
>HERV1_env#LTR/ERV1 6534-8768  [Simiiformes]
MLSLQLLSNLLPRRMPVHSINLITLVTIMLTGMGGNQDNCHHCMIEAWSGKGITKTLLYQTYYECTGTPLGTCVYNQTSY
SVCDPGNGQPQVCYDPGLLPYDFWFEIQIGKPLLPSYANPKDVGTGKLVSKTQVFPYSHKGSVSIYFDACQAAHLSNLNN
LGVVCKNLGQERVSSKAAKIITGEPEEECPDCNIQWTTHEFSQRLYAGRVALLASQEAKIGCATKTCNPLNLTILKPNMP
FWTKGHQGELSFDREGANLGIPLIIIKKTQRAKVQVSPMSQFRFFKSFNKHFNPKEPKVQIPPMSAENLFAQLAESIATN
LGVTSCYVCGGTSIGDQWPWEARELMPQDNFTIPEFVTKFNANPSVWLLKTPIIGRYCIARWGKDFQTQVGDTTCLDQQY
FEESKNKTQWRSFIDNSSVPDFNPLSQFPALNQSWYQLDAPNVWKAPAGLYWICGTKAYQLLPEKWTGACVLGTIRPSFF
LLPLKQGEDLSYPVYNEERKRTRRNVFTQISTVEKINTNIKKDIEIGSWKDNEWPPERIIKYYGPATWAQDGSWGYRTPI
YMLNRIIRLQAVLEIIVNETARALDLLAIQATQMRDAIYQNRLALDYLLASEGGVCGKLNLTNCCLQIDDNGRAVMEITA
RMRKLAHVPVQTWSXWSPNSLFGGWFSWFGGFKTLIIGFIAIIGGCLILPCLLPLLIRSIQSTIEAIVDRTTTTKIMALQ
KYQPVPQEEYVPTQEEINDCGALY
>HERVE_pol#LTR/ERV1 2188-5712 via tfasty with HERV3_pol, 4 frameshifts and 4 stopcodons.  [Primates]
MVRMTVGGKDIDFLVDTSAEHSVVTASVAPLSKKTIDIIGAMGVSAKQAFCLPQTCTIGGHKVIHQFLYMPDCPLPLLGR
DLLSKLRATISFTEHGSLLLKLPGTGVIMTLMLPREEEWRLFLTEPGQEIRPALAKRWPRVWAEANPPGLAVNQAPVLIE
VKPGVQPVRQKQYPVLREALEGIQVHLKCLRTFRIIVPCQSPWNTPLLPVPKPGTKDYRPVQDLRLVNQATVTLHPTVPN
LYTLLGLLPAEDSWFTCLDLKDAFFSIRLAPERQKLFAFQWEDPESGVTTQYTWTQLPQRFKNSPTIFGEALARDLQKFP
TRDLGCVLLQYVDDLLLGHPTAVGCAKGTDALLRHLEDCGYKVSRKKAQICRQQVCYLGFTIQQGEHSLGSERKQVICNL
PEPKTRRQVREFLGAVGFCRLWIPNFAVLAKPLYEVTKAGDQEPFEWGSQQQQAFHELKERLMSVPALGLPDLTKPFTLY
VSESEKMAVGVLTQTVGPWPRPVTYLSKQLDGVSKGWPPCLRALAATALLVQEADKLILGQNLNIKDPHAVVTLMNTRGH
HWLTNARLTKYQSLLCENPHITIEVCNTLNPATLLPVLEIPVEHDCVEVLDSVYSGRSVDWELYVDGSSFVNPQEERCAG
YAVVTLDTVAEARSFPQGTSTQKAELIALIRALELSEGKTVNIYTDSxYVFLTLQVHGALCKEKGLLNSGGKDIKYQQEI
LQLLEAVWKPHKVAVIHCGGHQxASTLVGLGNSCTDLEAQKAASALPGSVTAPLLPQAPDLVPTYSKEEKDFLQAEGGQV
MEEGWIWLPDGRVAVPQLLGAAVVLAVHKTTHLGQESLEKLLGWYFYISHLSALAKTVTQRCVTCRQHNARQGPAVPPGI
QAYGAAPFEDLQVDFTEMPKCGGNKYLLVLVCTYSGQVEAYPTRTEKAHEVTRVLLRDLIPRFGLPLRIGSDNGLVFVAD
LVQKTAKVLGITWKLHAAYQPQSSGKVERMNRTIKNSLGKVCQETGLKWIQALPMVLFKIRCTPSKRTGYSPYEILYHRP
PPILRGLPGTPRELGEIELQRxLQASGKITQTISAWVNERCPVNLFSPVHPFSPGDLVWIKDxNVACLCPRWKGPQTVIL
STPTAVKVEGIPTWIHHSRVKPAVPETWEARPSPENPCRVTPKKTTSPAPVTPGS
>HERV4_gag#LTR/ERV1 956-2509  [Simiiformes]
MGNSPSIPPDSTMGNSPSIPPDSPLGYILHHWNQFDPDNLKRKRMIFFCNTVWPHYELPSPEQWAVNGSLNYDTILQLDL
FCKRQGKWSEIPYVQAFMALYQNLTICETPRTRPPKESPKAELDIIDDPLLQGPPVSQGEQQPPPYSPLPSAPEAKTQEQ
TPGTLLSPPHTRRGTPYSTLPPALLPLREVAGAEGPVLVQAPFSITDIQQCKEKLGSYSENPRKFADGFQTLTLAFDLSW
RDVQFILATCCTPSEKERIFEAARREADXLFARNPQGNHPGPDTVPTTDPNWDYNTPVGMNNRAKFLEALLGGMRKGITK
AVNYDKVREVTQGKEENPAMFYGRLEEAFKKYTNLDPSSPEGKILMAQHFISQSAPDIRRKLQKLQMGPQTNQNQLLDTA
FMVYNNRDLEEGKREQSKEKRQAKIMAAIIGDALNAQRASKGNPKGHKDNASKGSCFKCKKTGHWAKDCTKPPPGPCRQC
EGTSYDPWHWRIDCPRSHRGAQSGKTLAVQKEELDED
>ERV42_MD_p2#LTR/ERV1 1795-3442 via tfasty with ERV47_MD_p2, 1 frameshift and 2 stopcodons.  Matches HFV_gag#LTR/Foamy.  [Didelphinae]
SQRKATFNAKRVQGWKTGAVTPGRTIKELLVGEIESGEGDRENKNLKQREIEKMERELQKDIVDMKNKIFESYRGTEESN
GKNKEQIKKYLENFLICKYGLEIKSTGISNKSFSQIQHHKRTLTKKKPCTDSPNPKEKETSKKQETAQEKSRVADSNTQK
SIPPNAEVQEQTSIQREPKESEQKSNLDPRAKDFFPKAIADSQHSDNNIESNNNPKPSQEIIERKNWEGESIVQNPYHKD
MLSHRPAHSTNSKKMGEGEKRQEQTAIHSLRSSDTEHSTSQNAAPASHQHSIACHSLSKTNSKAETYTGENQIIKTSQEG
VENQYLTEGEPDLQTEDTGLKQITGQELVQAWGTxNHxTLNGTSSAESHHNQEPYVWIKVGEQDYKALIDTGATRSVLKS
FPGNSTIDGSVTVAGATGEIQRVPKLEPKMVKLGPLSIDHTFLLIPGCPDNLLGRDFLCKIGATIQCEQSGKIYLHLPKQ
SLKHYPLLFLGQLDETPDQLHIDKPMFEIPKDIPQGIWATHANDVGRIKSATPVKIEVKEGTPPQNPSI
>ERV10_MD_gag#LTR/ERV1 898-2501 via tfasty with CfERV1_gag, 3 frameshifts and 3 stopcodons.  [Monodelphis]
MGNSQSQPIPLDLVLQHFGDFKNRAESIGLEVKKGKLQTFVNVEWPTFGVGWPFGGTWDMSRIISAVRARILLPGKEGHP
DQMPYILTWQSLAQDPPPWLQPYIGPDSGLVALTLDHTSRSRPPLEANRIRTPSAPPVLPAPEEPLLDLPLPPPPYNPPA
PFFPHPPGEAQAPPLGPGLPSPPPAHRTRGRTPPQEEAAQPSSTVALPVRAVGPMVPGGPLMHQYWPFTSSDLYNWKHQN
PPFSEHPQKLIDLLESVFLTHSPTWDDCQQLLRTLFTGEERDRILVEGRKLILGDDGRPTTDNVRLEAAFPSNRPDWDFS
TEQGRERLQSYRQNLLAGLRAAARKPTNLTKIGAVRQGPEETPAAFLERLQKAFRIYSPMDPTAPSNQTAILLAFVNQSA
PDIRKKLQRVDAFTAQSLEELLKVAEKVYNSRETPEERAERLRQEDIAxAGTETERDRRTGTQASAATPVQRRPGTxTNA
xGPTRYHPGHIGSSNLIPAPTNPGKHLTPGDSCYICGRPGHWQRECPHKTSGTMR
>ERV5_DR_pol#LTR/ERV1 3160-7344 [Danio rerio]
WGPENPAGENQLPMITTNSSQEPMLPIKIEGKTIPMLLDTGAVYTSINANYAAHLPLSGKYAKTVGFSGKTQLIPMTSPV
CIETKNQSVTLPILVSTQTPVNLLGRDALCKLGLHIWCSPEGVYIDAKGIDTQMMVAEPKANIYWIGQIDKEVWETINKW
GKYIEAQIPDSKMPQSGFHCTMMYDTKRDLSLEKEWQENTEGQQIEIVSQYMIVGQQGAALHIPREGFVEKWFNVIGSIP
HIAMYVGRNWETKDLGPMMEQAEKSRWETTEHPLIFQSSDKKYIKIVCATKLLGIPQEVILSEEKMTQMNAMSELTDSSE
TELFKEMESQVPIKLWSLHDTDVGLIQSASPVRVKIKPNAQLPRKAQYPLRPDAVAGIRNTIEGLVKAGVLVETTSYCNT
PIMPVIKPDKSRWRLVHDLRAINDIVEDFTAEVPNPHTLLTNIPPDAKYFTVIDLCSAYFSVPLAEESRYLFAFTYAGKQ
YTYTRMPQGFKHSPHVFNQILKADLEDVMMESTLIQYVDDLIICSPSLEQCHRDSIKVLTKLAEGGHKVSKNKTQYCQSQ
VEYLGRLIAFGTRAIAPDQLEAISKSPMPKTVGQMMTFLGMTGFSADWIEDYAIKTAPLREIMKQAGVENLKNPVKWNTD
AIIAFESMKKELQKAPALGNPDYSKEFFLYVANRADGYASAVLLQETCSGRKKQPIAYYSTKLDNTAQGYPPCHQQGLAA
VYYAYEKASTITMGYPVTIYTHHKTVELLEQGKFVLTQARILAYCTLLTYPDITIKRCKTVNPAELIPLDFEGEPHDCVA
NSLAFTRLRPDLESVPFPETEVTYFVDGSSYRDHLGVHTGFAVIKKEKENFVPVISQQCVQPCSAQLAELKALTAACQLA
KGQTANIYTDSAYAHGVCHLFGAVWKQRGFKKTDGSPIQHAEQIGQLISAMMQPKRLAVIKCQAHKKGNDFVIKGNNAAD
SEAKKASGCRVAILTPIVLIEPEPQLDDIVRIQQQAGVYEQSMWHQRGAKKDSLNIWRNHEGQIVAPTSLLNILIADAHG
FDHCSKGEVIRKIKQQGYWSPYLNAMISEFLSTCEICAKHNVRKGTATPISHIPVPEGPFKHLVMDYVDMIKRVQGKRYM
LVVIDRFSRWVEAVPSADQGAGTVIKFLTREIIPRFGIPSEISSDNGSAFIQKTVKQVLQQLRIKQRLGCIYHPQSQGMV
ERVNGTIKAKLNKICASTNLNWVDALPLALMSYRMQTNRNTHLTPHEMLTGRPMPVPFCRGPYKGPPLEQLQMELRSYMK
NLTAIHKAIYVQETRKGVREEVETPGPVVPGDQVYLKVFRRKWNEARREGPYRVIRATPTAVQVEGSTCWYHLNHCTRVP
VKKSGGETHQLGXSEPENHTEGNNDVQNVAEGGE
>ERV20_MD_pol#LTR/ERV1 2056-5574 via tfasty with CarERV2_pol, 4 frameshifts and 2 stopcodons.  [Monodelphis]
MAEPRVILEVEGKKVTFLIDTGATYSVLQTHNGPTFHWQHKVIGVGGKTLSCRETAPLTCAHEDKLFQHIFLVIPSSPCP
LLGRDIMKKLGSQFSLISVLNSPTSPLQKPATISSEIWEKVPSIVWDQGIPGRALQAEPVMISLKPDSLYPHRKQYPISP
EAREGLQPLIDKFLAxGLLEECSSPCNSPILPVKKPNGSWPMVQDLRHINEAIISVHPIVPNPYTILTKIPGNSQWFSVI
DLKDAFFCIPLHPKCRFLFAFEWVFPSDPQTPxVTCSVLPQGLRDSPHYFGAALNKDLRALRLRSSNVDDILISSPSETA
CITDTISTLTFLGERGYKVSASKAQLVSQSVTYLGHTLTPNSRSLTTDRKQAILSIPVPSTKRQLRTFLGMAGFCHIWIP
NFGIIAKPLYEATKGPDLEPLDWGGDQEQAFSLLKTRLSSTPTLGIPDLEKPFSLFTDERKQFALGVLAQYLGPDLHPIA
YFSKQLDSVSRGWPPCLRAVSATVLMAEEAFKLTLGQPLEILTPHHRVLSILEARGHRWLLGGRLTKYQALLLDTPSLTL
KVCRTLNPATLLPLPGDPTSHDCEELIDHTFSSRPDLKDSPLPEAEVSWYTDGSSFMENGVRKAGYSIVSQTATIEAKGL
PPGTSAQKAELIALTRALQLAEGKKANIFTDSKYAFHVLHAHGAIWKERGLLTTKNSPLKHGKEILSLLEAVTLPSQIAV
IHCRGHQGLDSNIARGNHRADLAAKEAARATSLTALTLTPRHPTIPKGISPSYTEEEIAQAELQGFTLEDSGWWRSPSGP
LLLPNNLMWKLVMGLHNSTHLGREALTTLIKPLFTGKGISKTIREICRSCALCAQTNSTGALRPPPLLKPIQRRGESPGE
DWQIDFTHLPPCKRYKILLVFVDTFTGWPEAFPSRSEKAQDVTKALLNEIIPRFGLPKTLQSDNGPAFISQITQMVSKAL
GITYHLHSAWHPQSSGKTERMNQTLKRALTKLCEEAKIDWIQALPIALTRIRIAPRAKLGLSPFELLYGRPFLTSDVLLD
TEIHSLVRFSRQLGPTHQVLREYANQILPKPSTEDTEESLHPAQTGDLVYLKTWSGSNHLTPRWEGPHRVILSTPTAVKL
EGQNTWTHVSRIKPFIPPETGGEGGTEATYSCEPLEDLKFLFCRKTQPKDTLE
>ERV33_MD_pol#LTR/ERV1 2289-5848 via tfasty with ERV10_MD_pol, 9 frameshifts and 3 stopcodons. Pretty poor consensus thus. [Didelphidae]
MAKVEGKPVKMLVDTRAEFSVLKEPLGKLSTKTSWVQGVAGTSRYSWTNRRTVNLGTWQVTHSFLVIPDSPAPLLGQDLL
HKVGAQIHFLNNWVSVTDDQGALLHVLTVALQDEHCLFVDPLPPDILAHVHPWLDLIPTVWAETSGVGLAINQPPVIVSL
KPGASPIRVKQYPMSLEARRGITPHIDRLLQAGILVPCHSAWNTPLLPVKKPGGGGDFRPVQDLREVNSPTEDLHPTVPN
PYTLLSNLNPGLIWYTTLDLKDAFFTLPLAPVSQPIFAFEWFSEETQATGKIMWTRLPQGFKNSPSLFSEALAADLRPYR
LWFPDVTLLQYVDDLLLASPSEEECKSATCDLLEHLQTTGYKVSAKKAxIARTEVTFLGYRLKEGWRWLTPAMKDTILHI
PTPRTPHQVWEFLGSMGYCRLWIPGFTALAQPLYAASWENPNWTWTKEMDSAFQALKDAMLHAPALTLPDPDKPFQLFVS
EDRGIAKGVLTQKLGPWDWPVAYLSKRLNPLAVATPAVATLVKDADKISHRPKQLLSLPPTPAIESVLRQPPARWLSHAR
LTHYQALLLNGPRVTFxVTAALNPATLLPTSEESTPLHDCQEILVEAIMAHPDLKDIRLPNSNFVWFTDGSSFLTPEGQR
AGAAVVDGQGCLIWHASLSEGVSAQKAELIALTQALWAAKGKHLTVYTDSRYAFATLHVHAPIYCELGFLTSTGKPISHL
HEIQDLLAAVWDPKVVVVVHTPGHQRGSSLEAVRNRAVDAAAREAALMAPCLALVMEIHQEIPSGKSSPAVLPPPPKEDP
QYSPEDCDWILKQDYTQEGNWFKDNAGNLLVPWTLGQLLTTHLHHLSHLGERKLGQLLDKGKVHFMGWGKFLHDLLSACR
ACQLMHAGKTPLHTRIRPRGAWPCENWEVNFTEIKPGRYGYRYLLVFVDAFRGWSEAFPTKSETALVVAKKLLEEIISHF
RVPRSLRSDNGLAFVSKVVQGMASVLGVTWKLHCEYNPQSSGQVEHMNQTLKETLSKLALESGRDWVTILPLALFRASNT
SGLLALSPYEILYGSMPPPLTAAFPSTLPPSFAPNDLRDFVLSLSEFQQELWPRLHAQFQQPPHPPHGFNPGDWVYVKRH
QKSSLQPHWKGPFMTLFVTPSAFKVDRIVSWIHHSHVQSAPPPESKEAATxSVSRHPDNPLKLKLRK
>ERV32_MD_gag#LTR/ERV1 257-1789 [Didelphidae]
MASKLVVAMGYMALMGNFIYMCYSFFFVMIPDYIYIYLYIYDSLQWLKIGIDRVISYLPVILGIIVAMIKLYYALKRVVL
VVGKIGKENEMKIMILAMRKEITQLKQMVENLTEEKETNKTNNTQQQENTKPDNVAEEGKKDEAEGAIPILPLRDHTSLQ
GDQGIIHVKTHKPFLSGDLESLRKRMPKWYVDPFCCIKEFKSAIHLYDPTFADTEILLSELFTQREKDQFIGETRSNPDL
TSWPEQWQDFELSHNQNLVYLRKAREDLVEAMKLYSKCPDTWGCFESLKQEVGEHPSVFLDRVVETAENVLGFQDLNEQN
LQHIRRQFVKGSNLPIKNYFWLHCPDWESLGLEDLRRMATYIFSGHKENSLEKDELVQELRNQLKETKDKLKQKEIDEIK
NLASLQSYRPKRNFTQNNQRKSLPKCFLCGKLGHIVRNCNLKAQIDSTNNKKGSWKNNTTYNKQTSTQCCNHNCSGSTQA
PDLDTMKWFIQQGAKPKYLAVVSGAAKSSQL
>DIRS-1_ACal_pol#LTR/DIRS 1713-3744 via tfasty with DIRS-1_NV_pol, 1 frameshift. [Aplysia californica]
MVSMNDIEVIQRLLETKATNFKAGQISLFKEFWKHLTSDKAILDMVSGTTIEFSEKNVIDNEISDLLNKGVIVESRHEPG
EFISSIFTRKKSDGSYRMILNLKEFNVNIQYEKFKMETLATTLNLVSKNCWMASIDLVSAYYSVPITTDDRKYLKFLWKG
QLYEYTCFSNGLAQCPRNFTKLTKPIYAHLRSLGHLSTGYLDDSLLLADEKVDCLKNIGDTISVFDKLGFVVHPTKSVLT
PTQEISYLGFIINSKEMILTLTEVRKEAILEACLEISSCRFNKIRDVARLIGLLVAGFPAVPYGPLHYRNIEKDKMKALK
TCKYNWEKSMHLSPQALEDIEWWKRDIGSSVSPITRPDPQLVVTTDASTKAWGAVCGTQKTGGAWSHEEACNMHINELEM
LAAFLGLKSFAKGLTDVHVRLFVDNTAAMICLNKMGSVKSPKLDELAKNVWNWCIKRNIWLSVARIPGSENIQADYESRH
VSVDTEWQIDSELLDFALKMLKCTPDVDLFASRLNHQCERYVSLKPDPGAFATDAFTLNWKSHNFLAFPPFSLLPRVLQK
IKTDVATGVVIAPFWPTQPFFPLLMKLLVRQPVLLSARKRLLALPSQPDVLHPLGKRLRLLMCKVSGNSTQNKAFQKKLP
SSSWPHGDLILGEPITHILQSGRGSLLGPKWIPFHRL
>DIRS1_yr#LTR/DIRS 3448-4413 Dyctiostelium [Dictyostelium discoideum]
MSFARTTNTKTAELLMKSWEPSTLKVYSSSYTRFRNFCTLNSLNPANITLVVFMDYLTHLFKHKPPLAFSTINGHRSMLN
QLLLLRNQTDIVNDPFITRIMTGIHKLRPSSAKYKEIWDANQVFKHLSTIKVIPKYTYTALLNKTLVLCKMFGLARSSDL
VKWSFKGLIITPDSIKGPVINAKEQRSGVVSILELTSLDDTNSQVCPVRHLATYLRASKGRRKPHSGDSVFIKNEVNRSK
LMILTQIVLSTLSKSGIDIVKFKSHSTRSAMASLLVSNNVPFHVVKKMGRWKSNDTVDTFYDKRIIGEKSGGFLNTVVQI
S
>DIRS-1_ACal_yr#LTR/DIRS 3642-4571 [Aplysia californica]
MASWRPDTRRAYNTYITKWKRFALRTKVDPISPPVIAAVNFLGELFSSGASLSAVCTARSALSCYLKVENGPFGNLDCVK
RLIKGIFESQSAVPLRSKLTTWDPLHVLDFLQSWFPHEDLTLKELTLKLTMFLALLSGQRCQTIHSLDTNFMKLTETKCT
FIITTLLKQSRKGHHLDPIVFMAFQENKSMCIVNMLKVYINMTRAHREGNGASKLLLSFQKPFKPVSRDTVSRWLKTVLN
MAGIDVSIFTAHSTRSASTSCALQSGISINAILAAVGWSKETTFTRFYKKQVEENFGEKLIQTYFTSKCP
>DIRS-1_CTe_pol#LTR/DIRS 1543-3555 [Capitella teleta] 
LKQKVGGRLSSFIRQWQHITETRSVLDSIKGIHLEFTSLPPLMHPSQACDSSRGVCNHKATLIADEIETLLRKNAIERAP
PTIGFYARLFLVDKKNGGLRPVFNLKPLNRFIMARVFKMATLRMVAHSLREKDFVVSLDLTDAYFHVNIDPSFRKFMRFK
FRGKLFQFKAMPFGLCSAPRIFTKLTQAITRYCRQMGIRIIFYLDDTLIMARSRRDLLYQRDFVMALLRNLGFLINLEKS
DLHPKKQFTFLGLEWDTDCPSVALTTEKVNRIQLFAHRLLQRPHSSCLDLQRFLGQTNFASFAVPRARLNSRALQTCLSA
RYNSIIDRFRKCVFSEEAILELRWWSTLLIVIKRLSPALPSVAMSADASDSGWGATWGTRSLAGTWEALDRRHINVLELQ
AIYNATLQWAPLLRGKVVSVHSDNKTAVAYILREGGTRSPPLMALTRRLLHLVDKWGITLRPCYIPGIANVEADALSRSR
VITEWSLLSGIFRRLFLLWGTPNVDLFASAHNAVVHQYFSIHRHDHQALGLDALQHQWDFPWMYAFPPPHLILQTLAKLA
ASPGILLLITPWWTDAMWMGEVISLSLCQPLLLPTPALKQQNTRDLRNLQFAAWIICANVSNLQDLRRSSPHLLPTQLGA
LLDRHTSPRGVPGRNGVKPAEWTDLISQRYP
>DIRS-1_BF_gag#LTR/DIRS 24-1646 [Branchiostoma floridae]
MPSLGHIPYYSAVISFSQSTPRIRVQRFLPLIPHLFLILFLGASLKRSLSEFPSDSGLFPLILPFLEEFSSLFDTMSSEN
TVENRELQEEGRRGKAKDKTAGDPRDKTAGDPRDIQHGGNTELPPKKPPAARGPHHQESNQLHPSGSQEIPEVVPTLPSF
EPGREAMRWPNFFPFGSFPGAFMPNNGASGSSQATASSSAPGSFPQLPPGYPGFPWLMPSPLGHGFQSPQLSALETKFEN
FVQCVEHQMARLDDRLQDPVQTGSGHAVRHLASDDTTSDDGGAGPTEDPQMEGMFSSDFPSYGSEGFLQPVPDALFDKIN
KAFNVRLPKEDFDKYYEQYPLFENLSATLSAPKLTPEQAACVDNKLVLEDSKLRKIQDRFLLAARPLTSAYYALKHEDDA
DLDKDEIAKAISAALVLLGNASFSMSLYRREECCPNLDKDLRFLIAPEVSTSDSLFGPDFVNQVSKTKASKRALGDVLGP
KKAASRPHQNSSSSNSQRHKQKHSAHFDRYRKKPYDKSGFYNKKNQAQSSGFRPPPNKKSS
>Ty4#LTR/Copia 371-5780 gag& pol joined by frameshift; RepBase copy contains several other frameshifts  gi|2131086|emb|CAA89409.1| TY4B [Saccharomyces cerevisiae]
MATPVRGETRNVIDDNISARIQSKVKTNDTVRQTPSSLRKVSIKDEQVRQYQRNLNRFKTILNGLKAEEEKLSEADDIQM
LAEKLLKLGETIDKVENRIVDLVEKIQLLETNENNNILHEHIDATGTYYLFDTLTSTNKRFYPKDCVFDYRTNNVENIPI
LLNNFKKFIKKYQFDDVFENDIIEIDPRENEILCKIIKEGLGESLDIMNTNTTDIFRIIDGLKKQNIEVCMVEMSELEPG
EKVLVDTTCRNSALLMNKLQKLVLMEKWIFSKCCQDCPNLKDYLQEAIMGTLHESLRNSVKQRLYNIPHDVGIDHEEFLI
NTVIETVIDLSPIADDQIENSCMYCKSVFHCSINCKKKPNRNLGLTRPISQKPIIYKVHRDNNHLSPVQNEQKSWNKTQK
RSNKVYNSKKLVIIDTGSGVNITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYGYIKIKNGHNNTDNKCLLTYYVPEE
ESTIISCYDLAKKTKMVLSRKYTRLGNKIIKIKTKIVNGVIHVKMNELIERPSDDSKINAIKPTSSPGFKLNKRSITLED
AHKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTDHEPGSSWCMDIFGPVSSSN
ADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQYVETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILT
STQDHAANGRAERYIRTIITDATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKSTGKLPLKAISRQPVTVRLMSFLPFGE
KGIIWNHNHKKLKPSGLPSIILCKDPNSYGYKFFIPSKNKIVTSDNYTIPNYTMDGRVRNTQNINKSHQFSSDNDDEEDQ
IETVTNLCEALENYEDDNKPITRLEDLFTEEELSQIDSNAKYPSPSNNLEGDLDYVFSDVEESGDYDVESELSTTNNSIS
TDKNKILSNKDFNSELASTEISISGIDKKGLINTSHIDEDKYDEKVHRIPSIIQEKLVGSKNTIKINDENKISDRIRSKN
IGSILNTGLSRCVDITDESITNKDESMHNAKPELIQEQLKKTNHETSFPKEGSIGTNVKFRNTNNEISLKTGDTSLPIKT
LESINNHHSNDYSTNKVEKFEKENHHPPPIEDIVDMSDQTDMESNCQDGNNLKELKVTDKNVPTDNGTNVSPRLEQNIEA
SGSPVQTVNKSAFLNKEFSSLNMKRKRKRHDKNNSLTSYELERDKKRSKKNRVKLIPDNMETVSAPKIRAIYYNEAISKN
PDLKEKHEYKQAYHKELQNLKDMKVFDVDVKYSRSEIPDNLIVPTNTIFTKKRNGIYKARIVCRGDTQSPDTYSVITTES
LNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHPHDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLK
DNSYTPGLYQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLT
LKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVAR
LVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRC
VSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLL
KITGKGNIADLLTKPVSASDFKRFIQVLKNKITSQDILASTDY
>SZ-55#LTR/Copia 59-5755 via tfasty with Copia1_OS, 2 stopcodons. [Oryza sativa]
MEEKYSAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDADITPANVAQVDFNYRARNAIIGGISSGEFNC
VQHHKSAHDMWTALCNFHKGNNDIQLVRQNQFHKEYQRFEMHPGESIDSYFKRFGEIVSKLRSVGKEFSNNDNARHLLNC
LDYGVWEMKVTSITESAPLSDLTMDKLYSKLKTHEMDIFHRKGLKHSMALVADPSGSTSSNDSAFVCGGFSLAALHSVTE
EQLEKIPEEDLALFARKFSRAYKNVRDRKRGKTNEPFVCFECGEPNHIRVNCPKLKKKSDKTTKKPEGQGRKGNKDLMKK
AIHKVLAALEEVQLSDIDSDDDDQEKGDKDFSGMCCLANNEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCDDFC
SDNDSVDDELSKERMAHLMIEISDKYRSSKYKIEKLKSENDGMALEIARLRSMIPEEDTCSTCASYLSEINLLKDKLKSC
ALGAGNPSSASVACSTCYEMKVDMGLLEMELKELKEKKFHDRIGRCENCPILTSDNDELRQQVAMLRTKNDLLESFATKE
PIHSSCANCAILETELKDAKTVIDSIKSIDSCSSCISLKVDLESAKRENFYLQQSLERFAQGKKKLNMILDxSKVSINNQ
GIGYDFDESLRIGTHEILGVTDGMIELAQKPITFKSAGFIGNTSSSSPKTSEPKMVPMTSKSKPVELPRPKNPKQVEHKQ
NQKQTKPVEKTKYECTYCGKAGHLVGFCFRKARKERQERFRTRRDTRVPERFKCACRSSGVSRFPRRDVHPRRDLARLGQ
NRHGHLAYNSAHNTKDACTPRMVQYWIPKSFLTNPSTESSRFALFFLxDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTR
ASGDETITFGDASSGRMMAKGTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFNISQV
GRVFFANFDSSAPGPSRCFIASENRDLFFWHRRLGHIGFDHLSRNSGMDLIRGLPKLKAPKDLVCAPCRHGKMTSSSHKP
VTMVMTDGPGQLLHMDTVGPAQVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGFFQSLARSLALEFPSALRAIRSDN
GSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILH
KTPYELRFGRRPKVSHLRVFSCKCFVLKPGNLDKFESRSVDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEASPGAR
PEISGVPDESILVDEDSDDDDDDSISPPLDSTPPVQETGSPSTTSPSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPP
DSMIGGLGERVTKNRSYELVNSAFVASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPSLGFNVIGTKWVFKNK
LSEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPRF
ENPKFPNHVFKLDKTLYGLKQAPRAWYERLKTFLLQNGFEMGGVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQF
SDVMSREFEMSMIGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRS
MIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKCIFRYIKSTLEYGIWYPCSSALSVRAFSDADFAGCKIDRKST
SSTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKIPVQHSRT
KHIEIQYHFLRDNVEKGTIVLEFVESENQLADIFTKPLDRSHFEFLRSELGVIHPYGLI
>SHACOP_MT#LTR/Copia 199-4092 (1 stopcodon)  [Medicago truncatula]
MAADEGKVKIEKFDGADFGFWKMQIEDYLYQKKLHQPLTEKKPDSMKDDEWNLLDRQALGVVRLSLSRNVAFNIAKEKTT
AGLMKALSSMYEKPSASNKVHLMRRLFTLRMAEGASVAQHINELNIITTQLSSVGIEFDDEVRALILLSSLPDSWSATVT
AVSSSSGSKKMKFDDVRDLVLSEEIRRRELGESSSSSVLHTESRGRNSTRGNGRGKSKARRSKSRNHRSSHNSKSIECWN
CGKTGHFKNQCRLPTKNQEEKDEANVASTSGGGDALICSLESKEESWVLDSGASFHASSQKEFFKNYVPGNLGKVYLGNE
QSCKVVGKGEVKIKLNGSVWELKNVRHIPGLTKNLISVGQLADEGYTTVFHGDDWKISKGAMTIARGRKSGTLYKTAGAC
HLIAVATNENPNLWHKRLGHMSEKGMKVMHSKGKLPSLRSIEIDICEDCILGKQKRVSFQTSGRTPKKEKLELVHSDVWG
PTTVPSIGRKHYFVTFIDDHSRKVWVYFLKHKSEVFEAFKRWKAMVENETDLKIKKLRTDNGGEYEDTKFKKFCYEHGIR
MERTVPGTPQHNGVAERMNRTLTERARSLRVQSGLPKNFWAEAVNTSAYLINRGPSVPLEHKIPEEVWSGKEVKLSHLRV
FGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRLWDDENKKMVRSKDVIFNERVMYKDRHNTTTNDSGLSEPVYVE
IDDVPGSPTDKSPQSGELTESSIRQPSDTLVHPTPVPVLRRSSRPHAPNRRYIDYMLLTDGGEPEDYDEACQTTDASKWE
HAMKEEMKSLISNQTWELAKLPIGKKALHNKWVYRVKEDHDGSKRYKARLVVKGFQQKEGIDYTEIFAPVVKLNTIRSVL
SIVASENLYLEQLDVKTAFLHGDLVEEIYMHQPEGFLEEGKENMVCRLKKSLYGLKQAPRQWYMKFESFMHKEGFQKCNA
DHCCFFKRYKSSYIILLLYVDDMLVAGSNIDEIKNLKIQLSKEFDMKDLGPAKKILGMQITRDKQKGVLQLSQAEYINRV
LQRFNMGDAKLVSTPLASHFRLSQEQSPQTEEEKELMAKIPYASAIGSLMYAMVCTRPDIGHAVGVVSRFMSNPGKAHWE
AVKWILRYLRGTTEKCLYFGKGEIKVEGYVDADFAGEVDHRRSTTGYIFTVGTGAVSWMSRIQKIVALSTTEAEYVAVTE
ASKxLIWLQGLLTELGFMQEKSALYSDSQSAIHLAKNSTFHSRTKHIGLRYHFIRSLLEDEVLTLIKIQGSKNPANMLTK
VVTIDKLKLCSTLVGLLE
>TCA2_gag#LTR/Copia 190-1107  [Candida albicans]
MAEFSDAELRKMMGTLSLLVQDSRREINHLHDKLENNSDSKYQSLETYINSKYADTIKSFEKLKYLDIDNSELVNTWIMC
FNQVKRFHPQVFDAFMEAENEDEIGIEKIQYTPYTGKHLNDMIRIFYMKISELIERKVSPNVSREMNDGQPQFVPNLFKK
VYEMIISKPDVSAAERIGKALFKLQSKLRELERESAFLLCQHLMTNDHQHDDIILKFLVSGVSPWYLHLQIYMLSYKLGF
SNLFLEIYAQHYELYKADPIYKLPDSMTLLNEIRSNRDYPKVVNAAKNTVQVNNVSSKNNKKKDE
>TLC1#LTR/Copia 77-4063 [Solanum chilense]
MSGVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAASAIRLHLTDDVVNNIVDEE
SACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHLNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTL
STTILHGKDSIQLKDVTSALLLNEKMRKKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARNCYNCDQPG
HFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAGTESEWVVDTAASYHATPVRDLFCRYVAGDY
GNVKMGNTSYSKIAGIGDICFKTNVGCTLVLKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARG
TLYRTNAEICQGELNAAHEENSADLWHKRMGHTSEKGLQILSKKSLISFTKGTTIKPCNYWLFGKQHRVSFQTSSERKSN
ILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYIFRAKDQVFQVFQKFHALVERETGRKRKRLRTDNGGEYTSRE
FEEYCSNHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKTFWGEAVRTACYLINRSPSVPLEFDIPERVWT
NKEMSYSHLKVFGCKAFAHVPKEQRTKLDDKSVPCIFIGYGDEEFGYRLWDLVKKKVIRSRDVIFRESEVGTAADLSEKA
KKKNGIIPNLVTIPSSSNHPTSAESTIDEVVEQEEQPDEIVEQGEQLGDNTEQMEYPEEEQSQPLRRSERQRVESTKYPS
SEYVLIKYEGEPENLKEVLSHPEKSQWMKAMHEEMGSLQKNGTYQLVELPKGKRPLKCKWVFKLKKDGNGKLVRYKARLV
VKGFEQKKGIDFDEIFSPVVKMTSIRTILSIAASLDLEVEQLDVKTAFLHGDLEEEIYMEQGEGFEVSGKKHMVCKLNKS
LYGLKQAPRQWYKKFDSFMKSQTYRNTYSHPCVYFKRFSDKNFIILLLYTDYMLIVGKDKELIAKLRKDFSKSFDMKDLG
PAKQILGMKIAREEQKKLGLSHEKYIERVLERFNMKSAKPISTPLVSYLKLTKQMFPTKKKGEKGDMAKVPYSSAVGSFM
YAMVCTRPNIVAVCVVSRFLEIPGKEHLEAVKWILRYLRRTTRDYFCFEGSDPISKGYTNVDMEGDLDNRKSTTCYLFTF
SGGDISWQSKLQKYVALSTTEAKYIAGTEVCKEMLWLKRFLQEHGLHQKEYVVYCESQSAMDLSKKAMYHATTKHIDMRY
HWIREMVDDGSLQVVKIPTSENPADMVTKVVQNEKFELWKELVGMHSK
>TCA2_pol#LTR/Copia 1760-6103 (pos 1150-1600 looks like N terminus of this protein, but is separated by multiple stopcodons and frameshift) [Candida albicans]
MTNKVERVTYVSIRNIKQEVADKYMIKDLYYYHLLINHLSHEKLQLLVKRGVIKPVKSTSAESAILNCQICVAAHAKLAS
HNHTQQRELERPLQRLHLDTAGPFTSNKTKSYLTTVIDQFSRYTEVIVSDTKAVKQSILHRLRVWNNRFQFKIAEIRYDN
ALEYPSAEELEELGIYKHLLPNYSPMLNGTAEATNRPIVQGIYKVVLNFSCQVLILFPFIVEYAVHIRNHTPIKEFDGAT
PYERYYGLSKYVIPFFQFGTDVLIKCASVQEAISLKLPSSRDKAFPTVMFGAFLGYGSDSFTFRVLVSTKGYPVITTSNI
RPIATMQVLNDYLAYISENSSISYDDTFLSPLNHPMIRTNQHDRRGDNINVEYENRPNVPFEYHAEPPRTNSSTGIIDRP
DIRPRADPTWQRMPDANIHQETTTVQTPDHGELDTMINNEHQLPRSGEGNYPGQQVRTDIIGQFRDRGPTTLNTPIDLGV
PDETDDISMTSENPIDSPNSEMIISPSLPTNELEHQIDISSGEMSLLQTNMEADNELKTNEMVLYKSKNDGIIIQQQQFT
ENLSDENEEDSSTDEETLEDKKQQRLEYNISPNDEWINNDVQNEDDTQVPHVKEPINYETQSRNETNMPRIEMGIIENLS
DDGKNTPRELRMVTYDNNKKIQKYQNSNIEILEPRNENKNHTFIESNLELLDNQEMFQEDPQVEDIRLTTPKKDKSLSPD
FNQTHNEIQLFMADINEDMLEEYDENINMNEVLADSTETLDKELDLDEESGRIEYIADRVRKKNRGTDGAPHGKYLKKND
KDFGSIKSQKKSDAQMDDEVGIAISKIRNFPFRLKDGRASFFPPYKTKFGRSVHPPKRYLNAIVKKIDYNQKEWRQSMEE
EIEKFKANQVYTVEKTPKNVVPLKTMWVHTYKTNDLKNHNYKSRCVVMGNYMVENRDFDPHAISSPVVDLTSIRLLSAIA
VENNLVMHQLDIASAYLNASLEDGRVIFVRPPRGFEVKPGYSWRLHKSVYGLRQSAHNWYSHFKNVLEANGLKQTLHNDG
IFWKNYENGDVLYVSVYVDDVFMIATNEKIIKEFVAMLETYFQLQYFGEATEYLGIQFRKTPDGYTLDQIPFLEKLVATF
NIQDSYGKDIPIIPKDINVVKQLRKSSQINDFVKLEKPQKLINSVSKTKYIDDYEENEEHDFKESPQADPLSAKGIKLYQ
SAVGLLLWASMNTRPDLAFSVNQLGAKCAHPDVDDWKRLMYCLRYIKKDMDFKLEYKRGRLNNKSKDFIIECFSDASFAP
DLDRKSITGTSIFVNGNLVAWATKKQKIITHSSAACEMLALNYTILKAFDLRNTIEDLELKIRNLHVHEDNQAVITILKN
DNFHPHRPIDICYKFLRQKLKDGFFSISYVESGDNLADSFTKALGRNKLIEHTKRIRERKDYDNNATLIVDVRTLEEIKI
NKKLVHH
>DIRS-1_Lme_pol#LTR/DIRS 1939-3702 (end of sequence) [Latimeria menadoensis]
FDVRLEHNTNPPSLLPLVSSDLPTGGRLSTFLPAWEAITTDQWVLEVIKSGYTIQFEESPPDSSPRLPRLPDLARAPDQV
VALELELASVLASWAAEPVPEGQEGTGFYSRYFLIPKKSGGLRPILDLRRLNQSLRVEKFRMVSLGTLIPSLSQGDWYCA
LDLKDAYTHVAIRPSHKRFLRFTVNGRHFQYRVLLFGLATAPRVFTKVLSVAAAHLRWQGIFVYPYLDNWLIRGNSEEEV
ARSLSTTMHLLSALGFILNLEKSQLRPVQNITFIGAVLDAVQGKAFLPQERVTSIRDCIAVFNAQRTVPARFFLRLLGLM
ASSVAVTPWARLRMRPIQRHLHQRWSQRRGSLSDPVHIMDSLRASLVWWQDACNLSAGVPFVPEEPTLILTTDASLRGWG
AFLGSEMVQGLWSEEESRLHINLLELRAVCYALARLLHKVSGSGVLLRTDNTTVVCYVNRQGGTRSPALCWEAELLWNWA
LSHQVGLRAVHLAGKDNVLADALSRDLVDPHKWSLNQQIVDDIFARWGVPDVDLFTSAENAKVPRFWSRRNEPGVSVLDA
LSNRWPAGLLYAFPPIPLIPRVIRKLRN
>DIRS-13_DR_pol#LTR/DIRS 1977-4291 via tfasty with TnDirs1_pol, 1 frameshift. [Danio rerio]
MSSPQSAAFVSPPAKMQRRRNLGGEMVQSCVQASSASPQHTMFRGLPTAVPQVHVQSIRPPCGLPSSGTRSQVCCHKALH
SLCSWQIKNPLSHPGSMPRAQKAKNKIKTQRKAKAQSRETGQSLSQTDPGQISLWPQEGASAPPVGPVRQQPLSLHPEAW
IECSLHPWVLATVTRGYRLQFAGKPPPFNGVIASVANEDLAQVLEAEISSLMEKGAIRRVPVEETQTGFYSRYFLIPKKD
GSLRPILDLRALNKHLRKYKFKMLTVGALTRSIRRGDWFASIDLKDAYFHISIYPAHRKYLRFSFQNEVFEFVTLPFGLS
LAPRVFSRCMEAALSPLRHKGLRISAYLDDYLICARTRERAERDAETLSSHLTRLGFRINNAKSQLIPSQEIEYLGLRLD
SVTYRAMLSERRITAFGLCLTHFRKGNLVSFRTCLRLMGMMASSLSVIPLGLLKMRDFQRWITAKRLCPRRHLARKVRIS
TECVMALHHWKNPCIFRSGAPLGSVSLRKVVTTDASLTGWGAVFQGRSVNGRWTHRLRELHINMLELMAVFLALKHFLPF
LKGFHVLVRTDNTTVVAYINRQGGTRSLQLHNLARKLIVWSAAHLSSLRATHVPGVRNVGADLLSRGNPTYGEWVLHPQV
VNQIWEMYGKAAVDLFASRANAKCPLYFSLEDEDAPLGVDALAHPWPNVLLYAFPPLSLISPTLDRVRESGLSLLLIAPR
WPGRLWLAEIAELLQGEPWPLPLRRDLLSQAGAQIFHPHPEQINLWVWPVKG
>DIRS-9_NV_pol#LTR/DIRS 1223-3238 [Nematostella vectensis]
KLEQPKLQVLETKGANSEELHPGQAPITVGQACSTTPNVSVANTFIAGNISNHVSNWELITSDPSILEIVTGYQLELNSI
PHQSTVPHFRFSKGESLIIANEIDKLLHKGVISKSSHCEGEFISTVFTRPKKDGSHRLVLNLKRLNTFVAYHHFKMESLQ
SAAQLLKKDYWMAVLDLKDAYYSVSVHPRYRKYLRFEFNDSVFEYSCLANGLASAPRVFTKLMKPVLASLREKGNLLVGY
IDDILLLAENPDKLLQEISETVSLLKSLGFTVHETKSVTTPAQTAKFLGFILNSQNMTISMVPEKVDKIRSACSALEQKE
GQVNIRDVASVVGLMVSAFSGVQYAQLYYRALENDKTDALKCNGWNLEGKMXLSPLAKQDLLWWIQGVDKHPQAILSPPP
AVILKTDSSLKGWGGVLEDTDMITGGRWSFKESQSHINYLELKAILLSLKSLCDXMQSTHIKVLCDNTTAVSYIRNMGGT
KSRECNTITREIIMWCMSRQLKLSISHIPGKLNTEADAASRKFNSNTEWSLDANAFSSLVCRWGTPDIDMFASRLNYKVT
PYVAWRPDPGAIAIDAFLLDWSKYNLIYCFPPFSLIGKVLQFIEESGTTAIIVIPHWPTQFWYPYLLQLLKAPPVQIKMR
KQTLALPFQPEEVHPLYPKLQLLGCLVSGHR
>TnDirs1_pol#LTR/DIRS Tetraodon gi|17066696|gb|AAL35360.1|AF442732_3 reverse transcriptase/ribonuclease H/putative methyltransferase [Tetraodon nigroviridis]
TISPPRRGEEEACYLTQSSRSVPSPVKKRRKERSPTVHEMEAPDVPGSLGALPQSSSLQFETGETLDRCFPGLPYVSPST
AQRLEVVSGGTQRIKFGFLHPDEVSRAECTPRIKNKCVIKKWQKKRCSGQLFPAEDAKTSPVSGRSLLREEMSSSEGDAM
GPLAARVDQWRACAVHPWVLSTVANGYKLQLSVKPPSFNGVLSSVADGPSARILEEEIVTLLNKRAIRRVPDEEVCQGFY
SKYFLIPKKGGSSLRPILDLRVLNKHLRKYTFRMLTYKVLCSSIRPNDWFVTIDLADAYFHIAIYPAHRKFLRFAYQGAA
YEFQRIPFGLSLAPRVFSKCVEAALFPLRNSGIRIFSYIDDYLVCSHSREQVITDSVTVLRHLRNLGFTVNETKSRLEPS
QYTDYLGLTLNSLSYRVRLSTEREQTFNHCLALFQLGKMVTFRLCLRLLGLMASVISVVRLGLLMMRDVQRWVASLRLCS
RKHLSRRVRVTARCMAALRPWRDPAALTAGVPLGAVSSRVTLTTDASLWGWGATLSGRTANGVWSQQMAQFHINVLEMQA
VFLALRHFLPYLYGRHVLVKTDNSSVVAYINRQGGTRSQQLHELARRLVLWSSSRLLSLRATHVAGVLNRGADLLSRGNP
LYGEWRLHPQVVAQIWQRYGKAAVDLFASQENAHCPLFFSLAEGSAPLGVDALAHPWPDVLLYAFPPLSLISPTLARVRE
QGLSLILVAPRWPSKHWIAEIVQLLMAEPWPLPCRRDLLSQARGEIFHPRPDRLSLWAWPVRGGT
>ERV1-1_AMi_gag#LTR/ERV1 638..1453[Crocodylidae]
MGSGSSREENSATPLGCMLRNFSKFKGXYGIKMTKDDLIKFCQLEWPTFGVGWPEVGSFDVKLANAVLKVVTRDGHWDQY
PYIDSWVTAVMNPIPPWVQKCKGKMCKMLLAKDTGKKPRVLPDSGSEGDLTQGLRRRDRAQSPASTDASRGGSSESSQRH
PGLAPAAREXEAQGVPQRRPKPTPTLREGRGKEAQGXSWQQPPPAYERKGKTTPRIPTRIPIRIILGHRVAGPRAGVANT
GMDGHWRRHHHHHHQPDPFVGPAISTPDTSVR
>BaEV_env#LTR/ERV1 5674-7371  [Papio cynocephalus]
SKMGFTTKIIFLYNLVLVYAGFDDPRKAIELVQKRYGRPCDCSGGQVSEPPSDRVSQVTCSGKTAYLMPDQRWKCKSIPK
DTSPSGPLQECPCNSYQSSVHSSCYTSYQQCRSGNKTYYTATLLKTQTGGTSDVQVLGSTNKLIQSPCNGIKGQSICWST
TAPIHVSDGGGPLDTTRIKSVQRKLEEIHKALYPELQYHPLAIPKVRDNLMVDAQTLNILNATYNLLLMSNTSLVDDCWL
CLKLGPPTPLAIPNFLLSYVTRSSDNISCLIIPPLLVQPMQFSNSSCLFSPSYNSTEEIDLGHVAFSNCTSITNVTGPIC
AVNGSVFLCGNNMAYTYLPTNWTGLCVLATLLPDIDIIPGDEPVPIPAIDHFIYRPKRAIQFIPLLAGLGITAAFTTGAT
GLGVSVTQYTKLSNQLISDVQILSSTIQDLQDQVDSLAEVVLQNRRGLDLLTAEQGGICLALQEKCCFYVNKSGIVRDKI
KTLQEELERRRKDLASNPLWTGLQGLLPYLLPFLGPLLTLLLLLTIGPCIFNRLTAFINDKLNIIHAMVLTQQYQVLRTD
EEAQD
>DIRS-8_NV_gag#LTR/DIRS 193-1356 [Nematostella vectensis]
MALNLDGKDENPPLQTGNIQSEAASALPSSILQADFVELLKDSLLPSLVDTVKRSLIDDANRQNSATGQAPSSKKGETVL
PSTATGSPNGDILPRQATGSQKGMQGGPTPAKRPRLTENINSPAVIHIGDEGEINDTQSQHELDWEDDLCEPSAQRWQAS
EELASLLNVCFAKQLSGFDKRQLTRSCPRPDVDCVYTPQLDRFLPDLVPKCKQEDKTLRKTQDLLLDVSGPISAAYEHIC
QAKDNPQEANLSEVLSLLTKSLQLLGNVNNHLSAKRRTQVLSKIGPKYTSLSNETWKNNGKELFGQEFEQRLKQRAETAK
AISSASFVPRGRPFFRRGASSSGTWQRGGTAYGQYSTRGRGQFRSTRPIRGRGRGFMPSSTQSTPQQ
>DIRS-2_NV_yr#LTR/DIRS 3015-4133 [Nematostella vectensis]
MVAISCKFTYRTTSYFTQKEEHPVLTIQSRAETSTPQDPTVVGLPLVRELHTSQGLSASASEVILQGWRSGTQKQYHSYL
KRWNVYCSQRKINPLSASVIDGLNFLGVLYEEQLQYSAINTARSALSSVIFPPGGGTFGTHPLVTRFVRGVYNARPTFPR
YQEIWDVAVVLSYLKTLHPPDKLSLMELTMKTTMLIALLSGQRCQTLHALDISTMDLTDKHCIFYIQELLKSSRPSKHFG
RLELKAYENDKRLCVVTIIKEYVERTKLLRGNDSRFLISFQKPHKPISTDTIGRWLKKVLAKSGININKYSAHSTRSASM
SAGKTANISIKTIMDAAGWSNVGTFRTYYDKPITQEPDNFGVNLLHAVDSDV
>DIRS-1_NVi_pol#LTR/DIRS 1618-3549 [Nasonia vitripennis]
TIQQSRKEKLDTVSVPAGRLKLFLDNWRKITDDKFIFSCISGYKIPVMEGVSKLKSYSYDQSGQKETETVQECVDALIKK
GAIKECSDHKDQILSPYFLVKKPDGSHRFILNLKNFNKIVINHHFKIEDIKTVVQLTFPNYFLASIDIEDAFYLIPIHVE
SRKFLRFKVKEKIYEFVCLPFGLCTAPLIFTKIMKVVAKYVRSLGFTSVIYLDDILCIESSVNKCKKNINETISVLEWLG
FRINYKKSNLTPSTSCQFLGFIIDTQKYAILLPNEKRKAIYKLLVEFLDLKRCSIRKYAQLIGKLISACPAIEYGWMYTK
ILEKEKIFQLIINDKCYDKMMNISDRVKQELFWWKENILEKIYHIKDGSFAMTIFTDASTTGWGAWNYSKKIYGFWSPDE
QKWHINYLELYTIKLALESLASDVKNSQILLRVDNTTALSYVNKMGGVRFDKYNKLAREIWKWAQFRGNILIASYIPTKQ
NVIADSLSRIKNIDIEWELNDMYFRKVVDHFGQPDIDLFASKENNKCKVFVSWKPHSETSYIDAFTIVWTNLYFYAFPPF
SLILRTLAKIKHDKAEGIIILPLWKSQPWFPLLENLILGKPLIFNANPNLLLSPCRSQIHPQADHLHLIACRVSGSFSRR
EISQ
>DIRS-2_SP_gag#LTR/DIRS 217-1521 [Strongylocentrotus purpuratus]
MSTSKKKMSEGDKSGSAERERAPGKANENVPSHPAKPGAGVSLACHPEPKRSTVPTQQKASTSLTTPKKCSSKKKHVEPN
PEIESLKERLNHFEGLLTKVVDALPKQTFTSTSSENPHFQREGDNVFTTADEFWDNHDHDMAAGSSGPLQADYGGNPGEE
HGGIPGEEPAGFGLDSDDAPVPSFAAKFAVPTGVGKPLDSELANSASYLMGHNLEEKTIEETATKYPCPANCILMDAPKV
NTAIWENLPAETRSRDLKLQRIQKALTKGIGAFVQTLDSHNMSDTQQDALALLCNANFEMNCMRKDMIRPDMNKNYTHLC
KPANPVTKLLFGDELGKKVKDLQDQHKAAAGVMRGAANFPKPSYHPYRRYTEAAKRQARDAGWFSNTARHNPGAGNMNTN
RPFLGRRPSWRGRPAPHTQTPQTGQRRPFRGGKK
>DIRS-5_NV_pol#LTR/DIRS 2-1381 (fragment) [Nematostella vectensis]
LCTCPRNFTKLLKPPLSHLRLKGHIIAGYIDDLYIQGQTLEACTRSVIDSIEMFESLGFVIHPEKSSLIPSQQITFLGFL
IDSMSTTVRLTEEKRTKIKMLLVELIKTRIVKIQAIAKAIGHIISSLPGVKYGGLYYRNLEMEKAHALKISKGNFESSMI
ISSQGMAELDWWVNNIDISFNDINRPPIDITIYSDASLQGWGAVMADTKTGGRWSPSESEQHINYLELLAAFFALKCFHA
SLAGKHIKLMIDNTTAVALINNMGTCHNKECNALVVQIWEFCISHNMLWITAAHIPGVDNHEADRESRHFHSQDTEWMLN
RDNLDMALSNLNFKPEIDLFASRLNKQFDAYCSYRPDPEASFINAFTISWSDEKFYCFPPFSCISKVLQKIIQDKAMGVM
VVPFWPSQTWYPILMSLLARPPVKLPPFKGLLTLPAFPETVHPLHKKLTLLICLLSGNN
>DIRS-2_SP_pol#LTR/DIRS 1416-3506 [Strongylocentrotus purpuratus]
QAFFRAPPVVEGQTSPTHSNTPDGPTQAFPRREKVVPDAKQAPDSSDQVSQNCSSISSEYTLPVGGRIKSFHDKWRAISN
DPYILSAVQGYKIEFDPARFPPSREKPFHTFKRNALESRQISSELLSLETKNVIERCSHSQGEFISNIFTRPKKSGGLRL
ILDLSELNKSVAYQHFKMDNINSAVLLLSPDCFMASLDLRDAYYSVPIHPESRKYLRFIWEGQLWQYKALPNGLSSAPRL
FTKLLKPAFASLHNAGHVVLGYLDDTLIIGRSHRQATKAVTATSELLSELGFIIHPTKSVIEPVQEIKFLGFVLNSIDMT
VTLPSDKKEELKETCTALLENATPSIRQVARVIGKLVAAFPAAQYGLLHYRELERGKIVSLRLNRGHFDRPMKLLDKARR
ELLWWIGHIDSSFRPINRRNPDLELRSDASGAGWGATNMTTHTGGRWNSQEAVIAKGNEINYLETLAAGLALKSFCSNMS
HKHVLLRLDNTTAVAYVNAMGGVKSPHCNEAATHIWNWCIERDIWITAAHLAGRDNVEADTMSRKFNDRTEWMLNEREFE
RIAKHFGIPDIDLFASRLNAQVSTYVSWRPDPHALAVDAFTLDWRNLNFYAFPPFCLVPKCIQKIMADKAVGLLVVPNWP
TQAWFPLLKDMIIGEPLFLPKSEKLLRQPVSNLSHPLSNLDLLCCRLGAAATDNKA
>SFV1-12_Gav_pol#LTR/ERV4 2531-5719[Crocodylidae]
MELHETESTPRRTEMGIKRKKTVTFMDQRFPETIGEGNYQRKTRDDNERVVVATNHMKIFEDDPRPYASLDIQNSEDSLD
FTTAKFLLDMGAQVNVVKPSIPHQRMSKIMMVQGLNTATATTRVKFLVKGHSKRLDAVLGNVNILGIPGIRTLGLKDKVL
EALPISTIPEMAWHQPTLKITSIWRYTPIPTKPQLHEPLDVLLEELMRNKSITPIYASTRLSPGWGIPKPGKPSQVRLVV
DYRQVNKRCVVLTQPAPYTLLQSLNEMAEYQASEWIGTTLDLKNMFFSIPITDPDGILNMCVRGKMYRWNVCPQGYCNAP
ALATSAINESLDRFHXNHPASRSVKIWSYLDDIALMGRDEELVNTITADLARHLSADGWIINTQKSQLIPTNRINFLGTI
FHGPTRRGTTHDAIDLDLWETKTPITKSDFQSLLGKLNWVRHYVTPQHLPLLARIQRQIREKTRQKTPWSPRDDKALREL
VASVKATTLYPIDFGVPLTILIGFTDDHLFVTAKNPDGNLVFVTHRTLQAAQHRYGVIGKTLLAAQLAEPLAVGKGKLKA
IGATLLMRLLHDRPDPYFQGDPSTWSALVLNHLYLWHAWRHEDLPPRSTPPDSHHVILYGTTQPAWMASDGSTRDSGKYG
FYCHPCSIHQIHPGCESAQRNELLGFREVIRHCFEHHKGTLPVPVVAIDSHYIYRIVTGTASPTEHLQLWDDIYXLLSSF
SVLPLIKHTRSHRADTDPVHQRIDELLEDSIPSDVLVTSTADTPVCVDPYLTWLHEHWGHPGPRACYQRWRQKSGSNQSY
GSHRNWKRIAQACTACAKEKCHQTANTKGALDKSNFEPGKTWQVDFFGPLPGASIPNRGLIIVDLGTRQLTVVPLRKTHA
AAVITALISVFAMWKTPATIQSDGGPPFTSSAIDRFARLYNITWHHHLPYHPQSNGVVERAVGLYKEALRLKGQGSYKAW
TKHNHEILINLNSTKELWNSRPPSTVQPWTPKFVPSELVWITLPDPKNRHPKILQGTVISAETYPNTYLIELMESGRSIL
THHNWLTRRAITDSIVNEDNQPT
>SFV1-12_Crp_pol#LTR/ERV4 1868-4951[Crocodylidae]
VAAAEAVSFGGDPQQFRDPRPYVTLPIRDPSSPTKAKEIKFLLDTGAQISVIRPSTPHILLNGKIHVQGLNSTANVSTAR
CVHHSTGKSFTAAIGDVNLLGVPEILKFDLKLALLQAFPISPCKAPSIAPHTPKIINHLSWRYTPIPTKPHLQSSLQKLL
DELQAAGRISKISHAKFLSPAWGIAKPGDPNQARLVVDYRRANKQVEPLSQPSPKTLPQTLSEMIAYQATPWFGSTLDLK
NMFFSIPIIDDVGILNMCVNGQMFKWNVCPQGYCNSPAVATAAINSTLEAFTTPGDVQIWSYVDDIAIMGRTPEAVTQTT
EKLIHHLQAHGWTVNMQKSQLTAKPHISFLGEVFDHETRKATTHTTPTIPWVKGTTPTRKEIQQLLGQLNWHRAHVPTSR
LEVIACLHQQLRTKANTRSIWDPIHDYDKLQELLKATSTTVLHSISPNESITVTLGHTSQILWATGTTSINKLVFSTYKA
LQPSQXRYGVTGTLLLASQLATTAYPNISTTTGTLIGSGVTLLPLLTPDRPDPTFHGLCTTWQELVQVFHFHFHHWKTKE
APASSTPSLHHQNPSLMYGTILPAWIASDGSTAHGGAHGFFCNPCQYIEVEPAAPPPNAQLEELLAFKGALQHCLDAHNV
REPVPVIAIDSQYIYKILTGQAQATENQPLWNTIFAILPHFKTIPLLQHTRSHRPDTDPVHAHIDAVLQDPEKRAEAIKK
TANRPQQVAAAILAKTDVNNQHLVQWLHEFWSHPSPNKAHLKWKRITAETPPFTITLQDWKTRSQTCYICNKVKATPTAS
AKQAFDPKYFPPGKTWQVDLMGPLPGVKRQAKALVLVDLGTRQLQCIPLTKTTAKTVCSALLQAMSLWQVPNEIQSDGGP
PFTSKALATFCSTYNIVWHTHIPYHPQSNGVVERSIGILKEKLRLTGNGTYLSWTSRLPQILIQLNEDKSLWTDRKQETP
EPWKPRFQPGELVWVAIPGPXEKKQLLYQGIIQSAGTYPNTYQVKTDVPNKTLLAHHNWLSRRSETKD
>SFV1-14_Crp_pol#LTR/ERV4 2030-5377[Crocodylidae]
ISAVGGGPATGSYASSVEQEGKRTTDNGSKQSELTRYSPVQRNDDPKRKXLPCHDEMTLKXVIQDSESYRRXKVEQGVEM
NFRXGGTSGDXGIDGMEEKGSPVLGERVGVAINHXKIFSDDPRPYSVVKIQDPEXPDKIVPTEFLLDTGAQINVIRATIP
HIRTNRIMLVQGLNTATTTNRVKILVEGXKKGLXAVLGSMNILGVPGIRMLGLKQKVMEALPIXTIAXHERHKPELKIXS
SWRYNPIPTKGKLREPLEKLLKHLEDQGSITAIXASTRLSPGWGIXKPGKPSEVRLVVDYREVNKRCTELAQPTPCNLVQ
SLREMAEYQAEKWLGTTLDLKDMFFSIPIQDDDGVLNMCVAGKMFRWNVCPQGYRNAPALATAAMNCSLEKFRHNNPDSR
QVEMWSYIDDVAIMGREEGVVERITQDLVEHLSKDGWMINLKKSKLDPTSEIEFLGTLFKGERRYGVSHGGKDVATXLKD
RIPKTKAEFQSILGKLNWLRHYILPEXLSVLSRVQQQIRDKSRRRAPWTGKDTKALERLLNTIENTSLSAINFSVPLIVT
VGFSDEHLFSTVKDSSGNLXYTAHRTIXSAQHRYGTIGKILMAAQLVEPLSVGHGKFQAVGATLLPHLLHNRXDPCFQGD
SSTWSXLVLNHXYQWHHWKHVDVTPLEPVRQDEKVILYGTTEPAWMASDGTTREGGRYGYHCXPCRVHHVHSGCESAQRN
ELLGFKELLLHCLTCHNGTLPVPVLATDSQYIYNIVTGRAXESENLDVWXEIYDLLSEFEIPPLVKHTRSHTTDTDPVHE
VIDKILQEPDCQEQVLVNESICTDPYLTWLHEHWNHPGSRACHERWNRVVKGNPGYGRSQDWKRIVQACEVCAKEKCHPT
GNTKGVFDKXKFNPGKTWQVDLLGPLPEAAIPNKGLIVVDLGTRQVTVIPLRKTHAAAVISALMXVFSVWKVPDIIQSDR
GPPFTSAAIERFAASYNIHWHHHVPYHPQSNGVVERAVGLYKEALRTRGNGXYKGWVKHNHEVLTNLNAXKELWNTRDIA
PTDPWKPKFQPSELVWVTLPDPRNKHPKVLTGVVKTPEMYPNTYLVELEESGQSIITHHNWLTRRAEKQXPDKIGP
>SFV1-19_Gav_pol#LTR/ERV4 2101-5637[Crocodylidae]
KKRVTAVGTIRATGGVADLPDNDPEQSEPVQNGQMKPEPKRSEQINNELKRNEPIRNESTNENLTQSETDQNTCKRNQPK
CNKLKQDDLKRIELKQNEPEENKAKRCEPKMKPKPKVTFLSEGVQEKDGVERMNEPDSNSNAVVASNNIALFNDDPRPYT
IINVQDPDGTNKITPTRFLLDTGAQVNVIKPSIPHLKTNRVMMVQGLNTATATARVKFLVEGHRKRLDAVLGAINILGVP
GIRALDLKQQVLEALPINIVAGXDRHXPELKTXSSWRYTPIPTKAHLREPLTALLKRLEDQRSITPIHASTRLSPGWGIA
KPGKPHEVRLVVDYREVNKRCTILSQPTPCTLLQSLCEMAEYQADQWYGTTLDLKDMFFSIPINDNDGILNMCVAGKMYR
WNVCPQGYRNAPALATSAINDSLGRFHENNPESRGVEIWSYIDDVAITGRTKDVIRRVTQDLIHHLTADGWIVNMQKSNL
EPTSRIDFLGTAFEGSKRRGTAHEKLDIKITKNRTPSTKADFQSLLGKLNWFRHYIMPEHLPILSRIQRQIREKTRQKTP
WTSKDTRALDKLLIAVENTSLSAIDLATPLVVTVGFSEEHLFVTVRDSEGSPVYVAHHTIQSAQHRYGTVGKVLLAAQLA
ETLAIGQGKLKAVGATLLPRLSHDRPDPCFQGEPSTWSALVLNHLYQWHNWKHEDIPPSSTVIEDKTIVLYGTIQPAWMA
SDGTTCENGKYGFYCHPCHEHLIHPGCESAQKNELLGFREMVHHCLQHHDGTLPVPIMAIDSQYIYRIATGTASPSENLE
LWKEIYGLLSSFSVPPLLKHTRSHRNDTDPIHEKIDQLLEQSTHTKHVLTTESADKSVCIDPYLAWLHENWGHPGPRVCH
QKWNRESKNSLKFGTQADWKRVTQACEACAREKCHPTGNTTGALNKDKFEPGKNWQVDLLGPLPGAAVPNKGLIVVDLGT
RQVTVVPLRKTHAATVITALTSVFAFWQVPRTIQSDGGPPFTSTAIERFAALHNVNWHHHVPYHPQSNGVVERAVGLYKE
ALRIKGGGTYKGWTKYSHEILTNLNTGKELWVEREPAPIEPWKAKFKSTELVWVTLPDPKTRHPKVLKGIIMSPEKYPNT
YLIKLEGSGQTLLAHHNWLARRAIKDSVRDPSVFPARGHVGVPFCVLDNTEGIGLNPKM
>SFV1-15_Crp_gag#LTR/ERV4 33-1948 via tfasty with SFV1-3_Crp_gag, 1 frameshift. [Crocodylidae]
MESELIRHCPWRTGDRDCANSNDLWAHIIYHQADGLINPLITGYVSLIGDKGGKEWAIQLAPSSFGCVMSRDGVTFRPRD
EVGSLSLARVKPDGAVNPTPAQEFARCIRHVREGGEGTPPDKFNCPNLPPDSRAHELLTQLREALESEGRTVTKWTGPKW
DKGKMINVLFHTVSILLREVANFDSQLGTASKTAEDLAVKCSAPPAPQDGTEQKQELQQKDAGTQTEKPPPVNGTDDNKP
RPEIGTEPKGRLYPSLEGLTANNETSPSKATPTSWPGYPPATAPLTKGNLTSPDVVTPTPWPDHAPPPTAPPPTAPPPPY
PEGLDDVPLMKTESKAGEKELMTSALPITVCKRTQAGGVTQTTTTTHPRTQMEMSELRKETEIQPDETPIVWLGRLVVAA
GHETLDSDEAMQLVQNTAWSRGLVTDPVPVTRNGHWPIPLPALVVEVLMRKSHIWHEGSPNQPNAIQLLHAIIGVSYAMW
NPNLHPLNLTQVQQGAAWPQRYLHNPGRVPCLHEAIEAATDVYGGPQGLTAKLVLNPSVNGASANVLGLVSHLQSAMAAT
PPKAHAAAYPIQAPPGGTSRRGPPRTAPPQRSAEERAMFGFLLNHTKLNKAQLRALGDEGQKVLAEQLGFKYNEQPKNE
>SFV1-11_AMi_env#LTR/ERV4 5192-6832[Crocodylidae]
MKMKISHIIVTSVIAILVTTQAEESFNDTTTGYQENSILSLLTLWANVIGDPDKSGLTACLRVPLSVDDSIIIPYVHALD
LGAWFRARNHDNPRNVSIDMRVRDQSIVEHQYTWESNLTVASMKESKCTKYVKSLLGIPVPGRPVPIRCSEIPWGIHPHG
IHGVRDDDSLTWDPEKTEPTWFIKLPPGPFRRTNQTPVVRTALHHRVVLTTWNIXNAVNVSNPNEWASYFYPVRKVAMIS
QWCHGYELPSSDIALPGELAKDRWKDRDCGELKTPAPLGMLWACSDGHLHTNLPATLSNVSCFIANVLLCPPLSINSAKP
TSPILIRQKRGATWSSLSQDEKXXKFWGWATGGAYWWAGXRFSMAETRMLIAVLTEQVETIANKTAKGFTLVDQQLQATS
QMTLQNRLVLDLMLLKEGGACGYLNLSHEHCCISIPNVSIPLNQQIRDLKKAAEETNKINDIGTGWLASIFSSLGWRPSA
WLMHLLTPLIALCIPLLGILCCVCIGCCIIDTIKKRVATLSTLVYTQLSTSDTDEEEPECASMDSTL
>SFV1-8_AMi_gag#LTR/ERV4 0-1817[Crocodylidae]
MASRTGSPGQREDEEYLDQLVRHCPWRNHYRPPTTNADDLWAHVAYHQARPDGRIGGHVSIRPTENNGGPLKEWVVAGLT
PAALGCLLTSPAVIYRPPDTAAEVQLNRVKPAGKNDCTPTKEYARCIKYLKEGGGCDTPPDKFRCPNLNPGGAENEILTG
LRENLETDGREATKWAGKRWSKGKIINILFRTVTTLLRHAANQGSVVETLARTAADQSATRSKTPSEDGAADGKEGGAEA
FQAGNPGXVSERPLGEGLSAEAGTTEGGGVKETPTAPSEEPPPYGTPRLYPTLPAGTSAPALQANPVALTKTVTDGAATR
TLTTFRARTRGELQELMKETRLNPGETLAIWQGRLILEHGADLVDLEECTALMRQPAWSGGACSDTTQILRNRAWPIPLC
AATIPALXTRAHAWHADPPGNPTATQLLYAIAGASYLTWDPGRYPLNLTPHQANSNWPHRWCHDPGTVPVSTPAVEACVE
IYGGENTPMFRLLLHPLVGGPIGNVLSSLARLSTARKAETAPAPPSQVQAAGAWGAPPNKPQADRPLRGQLPNRTPEERA
MFGFLLNKSGLTKSQIRGLGDEGQKALALNLGFKPRLQEPDERKNE
>SFV1-7_AMi_env#LTR/ERV4 5142-6641[Crocodylidae]
MLSAWAEATNTEDGLTACIRLPISVTSPVLSPYVYAYNVSXWFVARNXDKPRNVVVDTRVHQQSLVEHNYTWAQNLTVRS
MATTSCTKTVASLLGDPVDDSPVPINCSEVPWGINPGGVHWARPDNSLAWDPTKSNPPWFLKLPPGPLTKATKTPVVGAA
LDHRASLVTWDATLAXNISDPLKWSSFFYPVQRAATLSQWCHGYDRPPXTTKLPSELAPDRWKKQSCADINTPAPVGLLW
ACSDGRLYTTLPATITNVNCFLATVLLCPPLSINTSHPDSPTVLRRPRRHAPVWSSLPRAEKIAETRQWAVEGYFFRGIG
IAKARIAIAELAEQVEGLANSTSEAFSLLNQQLQGTSAMTMQNRLALDAMLLHHGGLCQYLNLSTTHCCISIPNVSVPLE
QQIETIKKIAADTNKIAGLGKGWLADIFGWLGWDTSSWLMHLLTPLITVLLPFVTIAVVVCMGCCVLQVIKDRFVKLSAF
VYTRLPEPLDTDEFVDEVAV
>SFV1-8_AMi_pol#LTR/ERV4 1817..4837[Crocodylidae]
VAAAEPGTDGRPFNDERPYITLNVSAPGDSDTTLTRFLLDTGAQVNVIKPETPHVRTSKTIFVQGLNATAATPIVKFCTG
GRVLHGVLGGINILGIPGIKALNLKDNIYLALPLTVTQGEKHQPTLTNPTPWRYQPIPTRPALQPRVENLLHDLCKRGCI
SPVTSSTYLSAGWGIPKPGKPAEARLVVDYRQANRHCSPLQMPAAQTIVEIINGMIDIQRNGEWWAITLDLKDMFYSIPI
SDPQGILNMCIGGKMYTWKVCPQGYRNAPALATTAINDTLDRFARLHPETANISVWSYVDDIVIMGHDRAAIHSTSEKLK
NHLDNEGWTVNVAKSMSEPSSDITFLGTRFAGQHRWGTAHNSAPELKSRPTTQTDFQGLLGQLNWFRHYVTPSQLKVIQR
LQHQIRKKTQRRDPWGDRDQEALERVMKEVRETRLIAPPTSNPLLIHVGYTNEHLWFTAKDSATGQLAFTGHHTLQTHQH
RYGCLAKVMLAAQLAEHHAAFPGTLVAPGGAILALLNPVRSHPEYQGTLKTWSTLVLRYQYYWSTWQVTDGDPTPDDEES
NFTVPQLYGTTSSAWIASDGTSRDGGAYGFYCQPCNEQELLXAHSGESVQVSELRGFHLALKHAHHRHNGTLPVPIIAID
SEYIYRIVTGAAQAAEHQHIWGDIKVTLLRFSTRPLVKHTRSHRPDTDPIHSIIDQLLAHGRPSYGENIPQLHLADTVED
NPLLTWLHEHWGHPGAEKARGRWKQQSDKGPSLERWREITQACHACVQEKPSRHKHLKGIFDPAHFAPGKTWQVDLLGPL
PGAKPPSKALAIVDLGTRQLLVLPTRKTTASAVQGCLQIAFAHWQVPHVIHSDGGPPFSSKALERLATEHNIQWHHHLPY
HPQSNGVVERHIGLYKEQLRLKGNGSYKNWTKYNNDILIAMNAGKTLWDECNPVPCPPWKPCYSPREPVWLTVPVANNKH
PSPVPGVIVKSGEYPNTYLVSDEAATPTRIVLAHHNWLSRRSIASHV
>SFV1-9_Gav_gag#LTR/ERV4 33-2122 via tfasty with SFV1-19_Gav_gag, 1 frameshift. [Crocodylidae]
LESELIKSCPWHSGSHRTIDPDDLWDHIAFHQASSSAEETISGYLSVRGTSREEWAVRLTPGALGCIVQDPRAVYRPRGG
NGSITLACKKTPGTTVSSPDREFAQCIRYMKEGGESTPLDRFNCPSLSTGSRGHELLTQLREKLERDGRKIKWTGATWKK
GRIINVLFREYVVLLRELPDTKTQLEITARAVSKKLAERPLQDGAGKAASAPKTALTSRRPAPPIPNPPSVKATPMTPPT
ALTSPPAPPTWPATPPPTAPPAEHTSPPPYVSQRHLEDVRKNNSQASETTRTPVVNNENTDEHVTTDRNTSTSTIGTNTE
ETTSVNQSTEVTTNTQENNKQEPEPQPSMELETAYPIAVRKIVAGAQGQSQVTVTTRSRTRSEMNELKRETSIRNEETPI
AWLGRLVVEAGSETLDQEEAMQLVRSADWSRAKVVDPIPVLANQHWPISIPALVVEALQHKVHSWHEGAANRVTATTLVH
AVIGASYALWNPTHQALNLTQAQVQGAWPHRFVTIPGDVPCLAEAVQAATEIYGGSQSITAKLLLSPSINGPVMHTLGLL
DQLQGAMKPKPQKNVYPVSDGEQEPQYAFPVESTTIHPRWINKNPGNRAYQKKLTWSSPPIRKYEPRNSPPPQTKSRPNR
VTYSPPQRPAIERAIFSFLLARSGLSKEKLRLLGDDGQRTLAKTLGFSEYSSKTKNE
>SFV1-8_Gav_gag#LTR/ERV4 33-2333[Crocodylidae]
MESELAKTCPWSSGVRQTTGPDDLWDHIAFHQAANLAANSISGYLSLRGTSGEEWAVRLTPGALGCIVRDPRAMYRPRGE
TGTVTLARTKSLGTASSSPDWELTQCIRYVKEGGENTPPDRFSCPKLTVGSRGHELLTQLREGLEREGRKIKWTGPKWKK
GRIINTLFREYVVLLRELTDTRAQLMAATRAVNENLTERPLQDGAGQMISAPKPVLTSRRPAPPIPSPPSVKAPPSETPP
LATAPPAAHTSPPPYISQRHQEDVRENCNQTSCRNCNKITISVGTDTTEEASSRTNPVNNETARINKTTSESTSTTATNT
EASKKTNRVTISEPETSQDTNAIETNTNEPANNHTIIRSNTSEINTMEPISKRVTKRNHTNITRMNETKTSSTINDTIET
NTMENNEPELITAYPIAIQKFVTGPQGQVQTTVTSRSRTCSEMSELRKETGIRNEETPIAWLGRLVAEAGNETIDREEAL
QLVRSAAWSRAKVVDPIPVMANYYWPIPVPALVVEALQRKVHSWHEGAVGRANPTAMVHAIIGASYALWNPAHRALNLTP
AQVQGVWLHRYATTPGDMPCLTEAVEAATEIYGGSQGITARLLLSPSINGPVMHVLGKLDQLQGAMRPKAPKTTYPVSDG
QHGTTYAYPIEKPSTRPQWTSKRQQTREYQRKPTRTTEQIVKWWPPRNPPSANEQPQPRNSPPPARDLSPRTSYSPPQRT
PLERAMFGFLLEKSGLTKEQLRLLKDEGQRALARTLGFNERAKSKNE
>SFV1-22_Gav_pol#LTR/ERV4 1722-4714 via tfasty with SFV1-2_Crp_pol, 1 frameshift and 1 stopcodon. [Crocodylidae]
LSAAVGSAATDDLRPYSRLTVADPQDPNKTVVVNFLLDTGAQVNVIRPQVPHKPTHSRMFVRGLNDTKETSVVKIWIKGA
DRPLTAVLGDINLLGIPGLKQLNLKDQVVAALPVTIPSPVHILQLMKTQPWKYRPIPTKEPQQAALKLLLTRLQEEGKIE
PVTSSNFLSAGWGLPKPGWPNAVRLVIDYREANKRCQPLATPYALDLPSILENMQRFQAQDWWGATIDLKDMFFSIPVND
HHGILNMAISSCMYKWNVCPQGYCNAPALACSAMANSLKKFYNPHQSDVKIWSYVDDLAIMGTSEAHVAETVQLLVTHLT
SDGWTVNTEKSQIKPQQKLQFLGFEFDVNQFRVAPDEELPLARWIREPPQSKQEFQQLLGELGWRRHFVDPEFLPVLARL
QSQLREKTRKRSTWTPTDHKALKKLATSLANTSLITWDLITPLEIHAGFTKTHIFASVRNDKGQLVYCAHKTLQTNQHRY
GVSAKVLLSLQLATAYSSGIGKIYAPGASLLPQLDYERLDPTFQGESKTWSRLVLQYHYEWHGWDHHDAPAIITGPPERI
ILYGTTLEGWMASDGSTRGGGSYGYHCKPCSVTNMWAGSMKDNAQVLELKGFCAMVEHCLTSHDPVRPVPIMVIDSQYIY
RIVTGEADPTENLYEWECVFQLLNKFVQLPLIKHTRSHLPETDAVHTKIIDRYLEDPLRVDVATAPPEETDNQHLVQWLH
EFWSHPGSRKAHDRWLASGGTSLEACRNAWRDAVKRCLACNKEKPHPSCQEAQAYNPNHFEPGQMWQIDLISPLPEAKRY
PKGLVVIDMGTRQLAVVPLTKSxADDIIKGLQQVGQWWKFPQEVQSDGGPPFTSKQITSFAMENNIVWHHHLPYHPQSNG
VVERAIGLFKEKLRLAGSGSYKGWTTHIIHVLMNMNEDKTLWEHRVVTMPTPWKPAYEPNELVWVALPTPDNHRPDPQPG
CIIRAGSYPNTYICDFEEQNKSRLVHHNWLTRHSKQIQ
>GGERVK1_pro#LTR/ERVK 2026-2484 [Gallus]
GQRPREGASGPGHLPKSEQWAKENMPTVALAMGLGDRPLVKVIMSYAGPRPQKEGPRTTLFTALLDSGADVTVIAEADWP
PNWPLTSHWQHIGGVGGTVPTKGAAEEVEIAIIDRSGTMEAPVLMQPLVAPVEGSILGRDFLTSLGVRLTNLY
>GGERVK1_gag#LTR/ERVK 248-2029 [Gallus]
MEAVIKVIVHACKIYNGKHAPSQKEIAAVLSLLEREGLLTSPHEIYDHSNWDSITAALSQRAMVTQKAAEFKTWGLILGG
LKAAREEKLAGERARELLGLEVAGPGVGLIPRAGPAGDKVAPAPTTHPAAIAPGTKKDEVASNCSSVEATTPPPPYPSQG
LYPSLKSVGEGGGRSLEECGNISCRADKQASGEGTAFRGGTXQPVCCDNECSSVCCCSNFPNGADCTVPPRGGCRGGAPW
PTSQGSTPEGCGPTAPAPWAPPTLTDWARVREDLRAADPARPPLALPVIVKTEGPAWVPLDSKAITRLSEIVKTKGLRSP
VTMAAVEALMASSLLPYDVISLMHVILEPVQYTLWYDAWNTQLQAVVAAATRDARHPANGRGRGDRTTLARLQGVADGMV
GSPEGQLRLLRPGELAAVTTAALQALRELARVTEPTLPWADIKQGPSEPFXEFANRLIRAVEGSDLPEPAQGPVIIDCLK
QKSLPDIQQIIRAAPGNLTTPGELIKYVLDHQRATPLTNEGLAAALQLAVQAATRPKDGGGKGVCXKCGQPGHFRTNCPN
KGGSKTDTDKKCQWCGGAGHTARNCRKIKEAMQG
>GGERVK2_pol#LTR/ERVK gi|50764802|ref|XP_426835.1| PREDICTED: similar to pol protein, partial [Gallus gallus]
RACWKMTWRANEPVWIPQWLLTVEKLRVVNELVDRELKAGHLVESTRPWNSPIFVIKKKSGQWCLLHDLRGMNSTLQDMG
ALQPGLPLPSMIPDAWSCLVVDLKDCFFSIPLHPDDCQHFAMTVPAVNNAAPSQRYHWVVLPQVMKNSPTICQMYVALAL
KEFRGCYLKLLIYHYMDDILVAGRELPKDIERQLWHHLEEWGLRVGEDKTQQGHPIQYLGVIVEKHQIRAQKMVVTEQRI
QTLNDLQILIGAIQWLRQFGPLTPSEMKEFTDSLKGDTDLVAPRELMAEGAVAVLHQGELHCPLLWGYHSAPKVALPQWD
TVAAQAISWCRKKVIPCVEDEPTCITFELVAEAWTHMLSHSAALQASLDGYSSRINTSNQTPTGLLIQLVTSFLEIPLSE
KPLPGHTLFTDASGKTCKYAVAWWSGQEWQAEIRQQEGVSIQQLELQAALLALQLSSQEPANIVTDSQYCFSVARLCKNC
CGTNTPTAAALYNALSEHAFPIFISHMSSHTELPGYITAGNQVADDACYMATIDTWTAAQQLHELYHQSSTTLAXLYNLT
LTAARQIVASCASCTAGVPPLEKGVNPRGLQPSKIWQMDVTEYASFGRQKFLHVTVDTCRDMLWAVALTKRTKRMTHVTG
IPGNSTGQAIIERTHAVLKGQLTVLRKGGGLPCKELCPSALLLHALFSLNHLERRTADHELSDREPL
>GibERV1_pro#LTR/ERVK 1887-2648  [Hylobates]
MGPQRIPTGVFGPLPKETVGLIIGRSSVLFKGLIVYPGIIDSDYTGELQVMASTSQAVVTVSKGQRVAQLLLLPYVSQIG
QTASSTARGSRGFGSSDVYWLQAVDAERPTLQLQIEGKTFSGLIDTGADVSVFSLQFWPTSWPLTASITHLQGIGMSQNP
QQSAQVLTWTDQEGHQGKFQPYVLPHLPCNLWGRDVLQQMGVYLFSPNPIVSQQLLQQGLLPNQGLGKHNTGILAPVQVT
PKNDRHGLGFPQGH
>GGERVK10_pol#LTR/ERVK 2568-5132 [Gallus]
KFXVRATVCQLSTAYAIPLRWKRDARPVWVDQWPLPLEKLKALRXLISQEFQLGHIEPSLSQWNTPIFVIQKRSGAFRLL
HDLRAVNAQLVPFGAVQQGGPVLSAIPKEWPLVVIDLKDCFFSIPLAEEDREAFAFTVPTLNNLGPAERFQWRVLPQGMA
CSPTICQLVVGRVLEPVRRDFPRYILAHYMDDLLLAAPTELGLQTLESRVMSTLTAAGFTISEQKIQRXPGVEYLGYKFG
PETVQPAGLAIQPRVKTLWDVQKLVGALQWVRGALGIPPRLMKPFYDQLKGSDPKEPRDLTHEMATAWQEILQSCMEQSL
ARWDPTEALEAAVCRCEAGAAAVLGHSLDAKPQPLWWLFSVQPTRAYXSWLEILAMLLRKTRLLSVRALGREPDVIHLQS
SFRDVQPLPETXLTVLRDFGGLIRYSDSXPIFDVAKPLAVSLRVRVQTSPLEGPTLFTDASSRTGQGAVVWQDSSNSWQT
AIFADRTVSVQMLEVTAVAVAVRLWREIPCNIVTDSAFXAKLLARMGQEGLPSTEAAGXLEEALASRTAPVAILHVRSHS
EVPGFFTTGNAVADKAASTQVFTVQEARDLHSTLHIGAXALSRACSIPLSVARDVVQXCPHCNSAPVIGAGVNPRGXGPL
QXWQTDFTWEXRLXPRPWLAVTVDTSSTVIVAXQHAKSNSTSAQNHWATAIAILGLPSQIKTDNGSCFISRSTQEWLAVW
GISHITGIPGNSQGQAIVERANRLLKDKIRVLGEGEGYRDRIPVGRQAELLAKALYALNHFERGDSKRTPVQKHWQPKVL
GEGPPVRVKTDSGXWEEGWRILVWGRGYAAVKHXETGKIVWTPSRKVKPDLRKDX
>ERVB2_2_RN_pro#LTR/ERVK 1809-2609 [Rattus norvegicus]
KKLDEGQPLSPVQREENKGQTSELNPEAIPFTIHDLPRATPGSAGLDLSSKVDVIISMEEGTVLVPTAVRGTLPEGVTGL
LIGRSSNYKKGLEVLPGVIDADYQGEIKIMVKATKHTVIIHQGEPYLKLLPYLKLPNPVLQSERGLGGFGSTDHIHWVKE
IKESRPMLTIYLNGRKFVGLLDTGADKTYISGKDWPSHWAVHQTENSLQGLGMASGVARSSEPLIWEHENKTGSIQPYVI
PTLPFTLWGRDIMKDMDVKLVTTEQDF
>ERV17_MD_gag#LTR/ERVK 67-1806  [Monodelphis]
MTQSNGLCDNILDWVSRANLGQSQERSVFTGFLCSIIFSISFLCFVGYFSGGMGNSVPVLLQDGGWQAEHLIQAALTAHG
VKVQKKMLKKFVGYVRQLAPWFPEGEIISSSEWERVGSKFGSEGETPPPDYAVIFNVIKSCIEDPEANKKMQAVLQMEVE
EEDEEGEVSGEVGNQRKNISCPPFASGARLYPSLIQENFPETGTVFKNKPTVTSSGEMRQGQVGKFLRVAELEKALGDLD
TGQAQLFPVLEDVNTQTRRFTPMPLKVLKELKEACTKYGPQAAYTLSLLELIAAENLTPHDWKQVASVSLSQGQAVQWRA
IWKEILEQERFRMEQTMMPGGAPTLDQLIGEGPNQFPQHQIGYIPQLYAVIASAAIKAWKGMEGIPKLDFNKLRQKSDQA
FEDYVAEVQKAVERTLGTVQGLEELIKTIVKQNATPDYRQVLINLPASATLEDMIIKALEVKSQSHQARTQAAMVGAAVQ
QAMKSQGKGQIRCYGCGKLGHMKKNCWSNLSGTKPKPSQKCQKCYKGYHWNRDCRSGNGQGGLREAPTNNPRAFPAMYQT
SLDWEKHQAPFRSTDQPFQG
>ERV1_MD_gag#LTR/ERVK 186-1733 [Monodelphis domestica]
MGLTISSHAGYIRLLMSLVEQGGRKVSKAQIKALLQVIQKAFPAFPAKGTLEVAQWDLIGQSLKDYQKEGNRVRKTVFNT
WSIIRTILEDLATSTYTAGEKEFPQTQELKKQDFKGTAPEETDGGREGECSEWSRDPPEAPGYSWKRSKTKESFATPKLY
PSLDTLTPPPPTPPPDYGLASRVSLVASPPPPCSPEVSKPYSPRNEPISPAQKGKEGISAFPVRYIEDPEDANRRIAQHK
PIDCKVLKMLRSSVVKNGAIAPFTLALLSNLAQQTLTPADWYLAAESALSGGDYLTWKLKFHDLCSLQASENRQAGINVP
FEQLVGQGEFEPIARQIAATEQIFNQIASAATKAWRALPGKDSESLYTEIIQKQNESFADFVDRLSTEVRRHIPHEDAAK
VLIRDLAFLNANEQARRALAPIKATGTLTDFLRACQDIGMGETRTVLTVSEQQGMLTGHCHACGRKGHYRRACPNRRPGK
TPGICPKCRKGRHWASTCRASNKRSLPNTGSNTQLN
>ERV23_MD_env#LTR/ERVK 6096-7943 via tfasty with ERV15_MD_env, 6 frameshifts and 1 stopcodon. Still, beginning missed. [Monodelphis domestica]
MGLQILLFLSLLTPPMSAQHHSHRPWKWTLSSWDSSSIIQTTTTSGAPSFTFLPCTIINRTDHASGKTRLLTLHVYYICP
SSNPGKHYCNRPNVYYCSYWGCETRSTGWTPPISFLSFHWGPSGCKPRCTARALYRGGFxRTWIDCSYLNLTVLQPTDDS
WLLGRTWGLRSYNGDDPGGLFFIKKELPQKTPPSIQGPNKALRPANPGHPPPPTPTSAPQLRPSPSSPVPFPSPPPPPLL
PPIPKEKPIIPYPYLPLLQASFSALNHSFPNFTTNCWLCLVASPPYLEAYALTDNNLTCSKVDNPSACHWDNDDPSLTIP
IIGGNGTCIGKNATLNPYCAVSFVTRNDCKFYIPPEYPWLCAKAGLQACWASTAPEDVCILVTIVPRVTFRPDQDFLPLW
ERLQNPRWKREPVTLAVTVAALLGAAGAGTGIAALTSQHISHNHLRAAVDEDIARLESTINFLEKSHASLAEVALQNRRG
LDLLFLREGGLCAALGEECCFYANHSGVIRDSLAQLRKELEQRRKDRETDGPWYAQFLPSSPWFSAILSTLLTPLIVFIL
ALTFGPWIFKTITRLVTRSIESSLKAFPMVQYHRLETVGHTSPSTEQYNQLHFSGR
>ERV147_MD_env#LTR/ERVK 5140-7268 [Didelphidae]
RADEALLVFFHRIRTHLSGSLTGSFDHMFSQQPKLPSLPPHPPPPPPSSASSSSTTPPPPDPVDKLIQPVGRLSLHPYAL
PPLRSCWRRLAASTRTAGPPSWGQLKALSQQAXDIVRKHNQEPTPDMVFVAMLAILACQVKPVSATARWAYFPEPPILHP
ATWLNDFQVYTNDSEFLGGPTDDYILHXSSLNFTYSGLSHMPPLCFTIGPDPTSGCLSVDFRSYLTDSPGKDNKRLVWLL
RMLSPVFSXDTFSVQLTPERPPENIPECKQLSDKYWQQIDEEHGFPPWRECGFPHKGVQYPXINNSFHIFDWSIFSPGXD
FRTFHDLIAEFTKVNWTKVNQIFPSEEPISRRYGPGWLSPLLVFFENPQSSITHFSLWRLIASLRPAVLLCPNDKKDFRY
VHACVRSPHALLIQTNNSFSSLQRESPTTFKISCSGCILTNCIDPSISATTVFVVKQPPFIMLPVNLTTDWYDDTGVYAL
QLISNNLSRPKRFIAALILGITALISVIASLAASTTALVQTVHTAQHVDNLSKNVSLALLTQEHIDKGLEARLNVLEEAI
XYIGNQLQNIKVRFKSKCHAEYKWICVSPLPYNQSDIPWENIQQHIFGIWNHSEFSVDLKTLHKQIMDISHSSTSLYSAS
SIANSFYDSVSSYVSHNGLIHTLIACGFALVLFFLILVCFPVIIRCLGSTIRQVQIEMKSFTLKNKKGG
>ERV41_MD_gag#LTR/ERVK 127-2047 frameshift [Didelphinae]
MGQTVSHDQQLFAEVITNMLSARGAKVSLTRIQRFLQHVSSVCPWFPREGSFDIENWERVGRMXQKHYTLEGPSAVPVDT
FSLWGLIRESLDPAPCRXKSKLNxIQSHXSKEENEKKPNIIVAPPERLSLNPTPQLYPALALHQVTIPRXEPDNNAGESP
PPQPEALSPNYQAGLEEEAAPYQTRPRVRNKLYPPLPPDSWDNLPPPSIPPPLQPPAPQSSATDISTEVRVEATAEIIKE
DPDPIATLCQLLKRLAERSPSFNPLSPASSNASIFIENGSPYQQALRQIDQEIPHPSMGLMAFPVVENVDQAGNLHRQRV
SIPFKTLKELKTATSQYGPVAPFTLALIDSLANEVMTPEDWHAVAKACLSGGDYLLWKSEYHEKAKAQAGRNARAQNGIS
LDMLMGEGAYSPLQAQLTFDIQAYQQINIIATQAWRKLPPSTLKNMELGKVRQGPEEPYQDFVSRLLQSVSRLIQDPEAA
NLVVKQLAYENANKTCQNAIRPFRHQSTLEDFIKMCSDIGPSHMQGAAFAAALQSSGVFAVRKEGHCFNCGKIGHFANEC
KFTKQKFKPQFNAMVRPKTPCPKCKRGLHWANSCRSRTDINGQHISGNSQRGQLPPRQQLGASLLTSLYPNCNEPLQEAQ
D
>MacERV2_gag#LTR/ERV1 176-2041  [Cercopithecidae]
MGKGDRRVRHLPTYAPGDALAVVWEKADDSVSLLKSVGRSPLPSEYFVILWRHSLAARLLLTCLVFVFVTFVLSLLYVDE
MGQTLTTPLSLTLTHFPDVRARAHHLSVEVRKGRWKTFCSSEWPTLHGEWPRDGTFNLSIILQVKAKVMDPGPLGHPDQV
AYIIIWEDLVRNPPSWVKPFLHSPSPSQSTLLALEAPKNRNPDPXKPVLPDEPQRDLLLLDPLPPPPQNPLLGPPPYASP
LPPVLSPALSSTASAPTLSPTSPSAPPSTPSPSPAPPKLTPRTPPPTPPRLRLRRTEDPDGPSTWQSSLFPLRTVNRTVQ
YWPFSASDLYNWKTHNPSFSQDPQALTSLIESILLTHQPTWDDCQQLLQVLLTTEERQRVLLEARKNVPGPGGLPTQLPN
EIDEGFPLTRPDWDYETAPGRESLRIYRQALLAGLKGAGKRPTNLAKVRTITQERDESPAAFMERLLEGFRMYTPFDPEA
LEHKATVAMAFIDQAALDIKGKLQRLDGIQTYGLQELVREAEKVYNKRETPEEREARLAKEQMEREDRRDRVRDKHLTKI
LAAVVREKGPGREGEKRRRPKVEKDQCAYCKERGHWIKDCPKRPKDQKKPAAVLTLGEDSE
>KORV_pol#LTR/ERV1 2023-5520 95% identical to GALV_pol [Phascolarctos]
GSRGSDPLPEPRVTLTVEGIPTEFLVDTGAEHSVLTKPMGKMGSKRTVVAGATGSKVYPWTTKRLLKIGQKQVTHSFLVI
PECPAPLLGRDLLTKLKAQIQFSTEGPQVTWEDRPAMCLVLNLEEEYRLHEKPVPPSIDPSWLQLFPMVWAEKAGMGLAN
QVPPVVVELKSDASPVAVRQYPMSKEAREGIRPHIQRFLDLGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVQ
DIHPTVPNPYNLLSSLPPSHTWYSVLDLKDAFFCLKLHPNSQPLFAFEWRDPEKGNTGQLTWTRLPQGFKNSPTLFDEAL
HRDLASFRALNPQVVMLQYVDDLLVAAPTYRDCKEGTRRLLQELSKLGYRVSAKKAQLCREEVTYLGYLLKGGKRWLTPA
RKATVMKIPTPTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLTREKVPFTWTEAHQEAFGRIKEALLSAPALALPDLT
KPFALYVDEKEGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAIAAVALLLKDADKLTLGQNVLVIAPHNLESI
VRQPPDRWMTNARMTHYQSLLLNERVSFAPPAILNPATLLPVESDDTPIHICSEILAEETGTRPDLRDQPLPGVPAWYTD
GSSFIMDGRRQAGAAIVDNKRTVWASNLPEGTSAQKAELIALTQALRLAEGKSINIYTDSRYAFATAHVHGAIYKQRGLL
TSAGKDIKNKEEILALLEAIHLPKRVAIIHCPGHQRGTDPVATGNRKADEAAKQAAQSTRILTETTKNQEHFEPTRGKIK
PRELTPDQGREFIQRLHQLTHLGPDKLLQLVGRTSFHIPNLQSVVREITSKCQVCAVTNAVTTYREPGRRQRGDRPGVYW
EVDFTEVKPGRYGNRYLLVFIDTFSGWVEAFPTKTETALTVCKKILEEILPRFGIPKVLGSDNGPAFVAQVSQGLATQLG
IDWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALLRARNTPGQFGLTPYEILHGGPPPVLASGEVV
GSNGDFFPVLFTHLKALEVVRTQIWDQIKEAYRPGTVAIPHPFQVGDRVLVRRHRSGSLEPRWKGPYLVLLTTPTAVKVD
GIAAWVHASHLKPAPPGAPDESWELEKTDHPLKLRVRRRRNESTA
>MacERV5a_pol#LTR/ERV1 1949-5521 1 stopcodon (MacERV5b_pol95% ide, 98% similar) [Cercopithecidae]
RGPDSGTPLTLAEPRVMLQVAGKSISFLMDTGATYSVLPSFSGPSHPSTVTVMGIDGTPSTYRQTPPLSCRLDGSLFSHS
FLIIPSCPVPLLGRDLLSKLGASVHFxPNPSPHLAFLFPLLSPDKPRQADPPLPFPVPINPKVRDTSTPIIAQHHTPVRI
RLKDPSKFPSRPQFPISLEHRQGLKPIITRLLRQHILVPANSPCNTPILPVRKSSGAYRLVQDLRLINEAVVPTFPVVPN
PYTLLSRVPPDTTHFTVLDLKDAFFTIPLHPDCHFLFAFTWEDPDTHVSSQLTWTVLPQGFRDSPHFFGQALARDILLCP
LTHSTLLQYVDDLLLCSPSWECSLADTATLLNFLGDRGYRVTPAKAQLCTPXVTYLGILLTPTTKSLTADRMSLIKTLQP
PQDAEEILSFLGLVGYFRHWIPNFGVLAKPLYQAARETPTGPLSDPSLVANSFKKLQDCLLSAPALSLPNPLRPFHLFTE
ERQKVATGLLAQPVGSTYQAVAYLSKQLDPTVQGWQPCLRALAAATELTQEALKLTLGHPLTVYSSHRLSDLITHKCLSH
LTPSRLQQFHLLFIENPHITLTTSPPLNPATLLPTPGYDSAPAHSCPEVLTTLPPARLGLSEQPLEHPDRTLFVDGSSVL
TPDGRRQAAYAVVTATQTVETRPLPLGTTSQKAELTALTRALLLSEGQRVNIYTDSKYAYLIAHTHSILWQERGFLTTKG
TPVVNGPHIKRLLDALQAPKEVAIIHCKSHQHSKDPVSQGNSLADSTARATALTSPPPRAPLLFLSPAYSPDYSSQELQT
LMAHPSVTRNKDGWVFIDSRIALPQTQAVHILTDIHRSLHIGPKAMYNFLEPIFHLPSLQAQIKKVHQQCATCSATNPQG
RLRHPGPTHQLRGHQPGEDWQLDFTHMPRHKKFRYLLTLVDTFSGWIEAFPTTRETAEVAATILLEHVVPRFGLPRTIQS
DNGPAFISKLTQQVAAALQITRKLHIPYHPQSSGKVERANGLLKLHLTKLTLETRLSWITLLPLALTRLRAAPWAPTGLS
PFELLYGRPFLFQELPALSPPLGSYLPYLTLLRELLRKHADRCLPTPASPNPKNPAVVAPGDLVLVKQLQPRALSPRWEG
PYTVILTTPTAAKLLGLPSWYHLSQLKKAPTQHDSRWTAQAVAPTKLRLTRAGNDPLPNLPQLSSTPEPR
>MdoERV3_pol#LTR/ERV1 3167-6682 (MdoERV2 96% identical, LTR82_MD_pol > 93% similar) [Monodelphis]
MPIIPIYSPPNSKEPHVTLKVGNSYYDCLLDTGASRSVLVSKPDEKCDSIGSLNVVGVSGKPLKVPKLSPRMVRVGPLTV
EHSFLLMPGSPTNLLGRDLLCKLQATIMCAPDGSLSLEVPEETLNLLPVFLSESQEAKEPPTFEIPTDIPESLWATSSTD
VGLLKSAAPVQIKTKSSPPPCIPQYPLSKEATEGITPIINSLIDQGIIFPCKSEYNTPILPVKKPKRGPDGKHLYRFVQD
LRAVNNHVIKRHSVVPNINTIISSIPSTATYFTVVDLCSAFFSIPIHENSRHIFAFTWNGTQYSWSRLPQGYVESPTLFA
QILGQDTDNIKFKNSKLIKYVDDLLLASADAEACQEDSKHLLLELHKRGHKISKDKVQWCLPKVEYLGFILTAGARSISP
KRIENIQKLSAPTTKKQLRAILGATGFCRQWIPCYGEITKPLIALTRDSVPEPLKLEPEHLSALSELKKAILSAPALGIP
DYNKPFTLYVHERRGVASGVLTQTLGPSQRPVAYYSAQLDPIASGAPPCLRGVAATALLVTKTVDLVLGCPLTIMCPHEV
EALLLRQRTQAFSDQRITRYEITLLNNENITLKRCTTLNPATLLPDLPTSGEPLHSCETLVSMAEKPRDDLLDTPLKNSD
LILFTDGSSFMRDGIRYSGAAVVTEFATEWSASLPSNISAQGAELIALKHACIIAKGKKATIYTDSRYAFGICHSVGMLW
LQRGFLTSAGKSIANAEIINEVLSALQLPEALAVVHCSAHTGGTDPVSRGNDRADAAAKLAAIEGPELLLTLTTTDDSNL
SLSYNEKEVEKWKQKFKAKQINGVWVSSEGKPLLPRSFYHQICQSVHNNGHFGTQGIVDSVKRVWIAPGITTIASKVCSA
CSTCQAYNQHAFRGKAFGGRPLAYTPFEHLQIDFITMPKAGQYKFCLVIVDQLTRWPEAFPTARATAAFVAKVLLKEIIP
RFGLPARIDSDRGSHFTDSVLNQIYSCLGITPKFHVPYHPQSSGQVERMNKELKTMIGKLCTETHLKWPEILPLALFYLR
SRPRGDLHISPFEMLFGHPPIQAKPFSPAYTSLLGGDTTIASYIQELQHKLRELHESGAAVQAGPLDFSLHDLNPGDNVY
IKNFQRTGATQPSWEGPFQILLTTPTSIKVGEKDSWIHCSHVKRASSVETD
>MacERV6_pol#LTR/ERV1 1887-5411 [Cercopithecidae]
RCPHSETPVTLAEPRVTLQVAGKPISFLIDTGATYSVLSSYGGPSQPSTISVVGVDGKPSNPRQTPMLNCCLDYAYFAHS
FLIMPSCPTPLLGRDILTKLKASINLPSHPLPSSNVTLIMPLCTHNQGPNPPSPVFPVPVDPQVWDTSTPVVARHHLPVL
IHLKDSTHFPSRPQFSLPLRHRQGIKPIIDRLLQQQILIPTHSPCNTPILPVKKPSGAYRLVQDLRIINEAVIPTRPVVP
NPYTLLSRIPPETSHFTVLDLKDAFFSIPLHPDCYFIFAFTWEDPETHVSTQLTWTVLPQGFRDSPHFFGQALAKDLAQC
PFRSSTIIQYVDDLLLCSPSHDVSLQDTATLLNFLGRLGYRITKQKAQLCLPKVIYLGIELTPVSKSLTTDRLSLIQSLX
PPSNGEEILSFLGLVGFFRHWIPNFGVLAKPLYQAAKESPTGPLSDPKLIATHFTRLKSCLLSAPTLSLPNPLYPFYLFT
DERHKIATGLLAQPIGTTFRPVAYLSKQLDTTVQGWQPCLRALAAAAELTKEALKLTLGGPLTVHSTHRLRDLISHKCIS
HLTPSRIQLFHVLFLENPDIKIATCSSLNPATLLPTPNTSHTPEHSCPEIIQLALPTHLHLRDQPLPDPQLTFFVDGSSF
VDPHGNRHAGYAVVTNTQVIEAKPLPLGTTSQKAELTALTRALHLSEGKTVNIYTDSEYAYMIAHTHSVLWQERGFLTTK
GTPIINGKHIQRLLEALTSPKEVAIVHCRGHQKPTNPIAQGNNLADTTAKSIALSTENPRSLCFLTPQYTPSYSSEEKNK
LLQNPHATITPDQWIFIHNRVVLPEAQTQHILRDIHNSLHIGHQALYNFLNPIIECPSLLSHLKRISQQCLICLKANAQG
GIRNAHPSHQLRGHQPGEDWQIDFTHMPRHKKLRYLLTLVDTFSGWIEAYPTTGESASIVASILIEQIIPRFGLPRSIQS
DNGPAFISRVIQLVTDSLNITWKLHIPYHPQSSGKVERANGLIKQQLTKLSIETRQSWVTLLPLALTRLRATPRGPTGLS
PFELVYGRPLALQELPSLPTPLAPYLPYLSLLRQLLREHAERSLPHPTQGNSEAPSALSPGDQVLLKDLHAKGLTPKWKG
PYTVILTTSTAAKLLGHSSWVHLTQLKRAPPPQTQWQSTELSPTRLRITRLNTN
>KORV_gag#LTR/ERV1 172-2022 no M [Phascolarctos]
DRGVSSGQTCSGAHRPAILGDVPGSGEDQGRLVDPTARDNSPLISQLHCLERHTLPSDSFSCLFNIRLRRHIIFFLFISI
IIIIWVVIPLFGTPRMGQGESTPLSLTLDHWKDVKTRAHNLSVEIRKGKWQTFCSSEWPTFEVGWPPEGTFNPSIISAVK
RIVFQETGGHPDQVPYIIVWQDLSNSPPPWVPPLAKIAVASGQDNGRKSAGGRPSAPSRLPIYPETDSLFLLSEPPPYPT
SPPPPPAPHAARPAPGLMAEGLGSEGPAAGTRSRRPRSPTGDTGPDSTVALPLRAVGPPAEPNGLVPLQYWPFSSADLYN
WKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRP
QWDHNTAEGRERLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSF
IGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYHKRETEEEKQEREKKETEERERRRDRRQEKNLTKILAAVVSEKGFR
GRQAGNLSNRAMRAPREGRPPLDKDQCAYCKERGHWARECPRKKNARETNVLTLGD
>HERVH_gag#LTR/ERV1 854-2068 via tfasty with HERVFH19_gag, 2 frameshifts and 6 stopcodons.  [Primates]
MDNFPPSIPPSPLACVLKNLKPLQLTPDLKPKCLIFFCNAAxPQYKLDSSSKEPENGTFNFSILQDLNNSCRKIGKWSEV
SDIQAFVYIHSLPSLCAQCNSSQIFLLSLPPALxVPTPSIAESFxSSFSTDPSDLSPPHQAELGPNSSSASTPPPYNPFI
TSPPHTQSGLQFHSVTSPPPPAQQFPLKKLAGAKDIVKVNAPFSLSDLSQISxHLDSFSSNTKNPAQFMAHSAATLRRFT
ALDPKRSKGRLILNIHFITQSAPNIRIKLQKLNSGPQTPQQDLINLTFKVYNNRKKLQFLASTVRQTPDTSPAHKNFEMP
QPQVPGVPPEPSPPGACYKCQKSGHWAKECPQTRIPPKLYPISVGPHxKSDCSTHLAATSRAPGTLAQGSLTDPFxDLLG
LAAED
>HERVFH21_pol#LTR/ERV1 1974-5334 via tfasty with HERVFH19_pol, 9 frameshifts and 3 stopcodons.  [Primates]
CPGTDAPATTISSSEPRVTLMVAGRPVSFIFFNTGTTYSALPNFSGPTESSQVSVVGIDGQVSKPRATPPLFCSLHNFSF
THSFLVLPSCPTPLLGRDILSKFHTTHVFLSTATRVPPAPLCCPAPDPSPQHPLPTSLVNPVVWDTTTPSIAAHQDPIKI
QLKDPSKFPNIPQYPISLTHQKGLQPIINKLCSRRLLRPTRSPYNTSILPVKKSDGSYQLVQDLRAINQAVLPIHPVVPN
PYTLLSLIPSNTTHYTAIDLKDAFFTIPLHPDSQNLFAFTRTDPDTLQSQQLTWTVLPQGFQDSLLFFGQALAQDLASLD
LSPSRLLQYLDDLLLCSPSLKNSQTHTATLLNFLTNKGYRVSPRKEQLSTSMVTYLGIQLSPGARAMTPARAALIDKxST
PPSSKSEILSFLGLAGFFRIWIPNFALLAHPLYKAAKGPLNEPLNPSHNILPSFRELQTALVTAPALSLPNISQPFTLYT
AKNRGIALGVLGQQKENPPSFAPVAYLSKQLDNTVKGWPTCLKVLAAAAILALESRKLTFSQNTTVYSPHNLQDLLSSRA
LSSLPPSRIQLLHALFIKNPKFSLAKSAPLNPASLLPVSSSLPTHSCTDILDHLQPHFPNISSEPLTNPNDQLFIDGSSS
GPTGSPKIAGYAVVSLDQVIEAKPLPPGTSSQKAELIALTRALTLSKGKRVNIYTDSKYAYHILHSHAAIWQKRGFLTAK
GTPITNGSLIYQLLQAAHLPTKAGVIHCxGHQTGSERPLREQINLKRKHKSQQGSKEQNLRRDRNEISRGNRKADEAAKE
ASLSSAPASLLLITPAIQPKNSPTKQKASLLQQGTSFQGDWIVKNQKLVLPQEQTKEILTSLHQSFHIGARPLYLLLCPY
FSSPHLFTSLKDITSNCHICSVTSSQGALHSPSIPTHQLRGTLPGEDWQIDFTHMPPVKRTKFLLTLIDTFSGWVEAFPT
SSEKAAEVSQILVTEIIPRFGLPGSIQSDNGPxFISQITQQVSQSLGIQWRLHIPCWPQTSGKVERANGILKAQLTKLTL
EVQKPWTSLLPIALESIRASPKAPSFLSPFELIYGRPFLLQNRPPSNSQLGEYLPTVSLMSYLLCQQADQALPKPHEGP
>HTLV1_env#LTR/ERV1 gi|4850202|emb|CAA40263.2| envelope glycoproteins [Human T-lymphotropic virus 1]
MGKFLATLILFFQFCPLILGDYSPSCCTLTIGVSSYHSKPCNPAQPVCSWTLDLLALSADQALQPPCPNLVSYSSYHATY
SLYLFPHWIKKPNRNGGGYYSASYSDPCSLKCPYLGCQSWTCPYTGAVSSPYWKFQQDVNFTQEVSRLNINLHFSKCGFP
FSLLVDAPGYDPIWFLNTEPSQLPPTAPPLLPHSNLDHILEPSIPWKSKLLTLVQLTLQSTNYTCIVCIDRASLSTWHVL
YSPNVSVPSSSSTPLLYPSLALPAPHLTLPFNWTHCFDPQIQAIVSSPCHNSLILPPFSLSPVPTLGSRSRRAVPVAVWL
VSALAMGAGVAGGITGSMSLASGKSLLHEVDKDISQLTQAIVKNHKNLLKIAQYAAQNRRGLDLLFWEQGGLCKALQEQC
CFLNITNSHVSILQERPPLENRVLTGWGLNWDLGLSQWAREALQTGITLVALLLLVILAGPCILRQLRHLPSRVRYPHYS
LINPESSL
>HUERS-P3_pol#LTR/ERV1 3054-6523 via tfasty with HERV17_pol, 4 frameshifts and 1 stopcodon.  [Primates]
AAQTAITAQEPRVILEIEGRKVDLLLDTEASLSPLLSNPGLPSSHSTTMRGVSGKTLTRYFSQPLSCSWGDLLFTHAFLI
MPESPTPLLGRDILACMGASILMAPGQTLCLXLVEANINPEVWATQGRIGRAITTRPVQIHLKDPTSFPNQRQYSLKPEA
RKGLEAIINNLKMQGLLKPCSSPCNTPILGVQKPNGEWRLVQDLCLINEAVVPIHPVVPNPYTLLTQIPEGTKWFTVLDL
KDAFFCIPLHPDSQYPFAFKDPSGQTAQLTWTVLPQGFxDSPHLFGQALSKDLSEFSHPQVKVLQYVDDILLCAPTEEAS
QEGTEALLNFLADRGYKVSKSKAQLCKTSVKYLGLVLSEGTRALGEERIKHISSFPLPKTLKQLRGFWGITGFCRLWIPG
YGEIACPLYHLIKETQAAKTHLLTWEPEAQKAFNQLKQALLKAPALSLPVGKAFNLYVSERKGMALGVLTQARGPXQQPV
GYLSKELDLVAKGWPACLRAVAXVALLVPEASKLTLGNDLTVYTPHNVAGLLSSRGSLWLTDSXLLKYQALLLEGSTIQL
KTCSHLNPDTFLXEETGEPEHDCEQIVVQTYAAREDLRETPLENPDWTLFMDGSSFVEQGIRKAGYAVVTLNNVIESAPL
SPGTSAQLAELIALTRALELSKGKVANIYTDSKYAFLVLHAHAAIWKERHFLTTNGSPIKYHQEINRLLSSVFLPREVAV
MHCRGHQKGTDEIAKGNKLADQAAKSAARKPQGINTLQAPLIWEGSIREIKPQYSPTEIEWATSRGYTFQPSEWLQSEDG
KLHLPASSQWKVLKILHQAFHLGKDKTYQCAQRLFSGENLLKTVKQVVNACEVCLKNNPLNRRLLPPQTQRMESYLGEDW
QIDFTHMPKTKGIQYLLEWVXTFTNWVEAFPCRTEKASEVVKVLVNEITPRFGLPKYLQSDNGPSFKAAVTQGVSKALGI
QYHLHCAWRPQSSGKVEKTNDIIKRHLRKLSQETHLPWVTLLPMALLQVRNXPSKLGXSPFEMLYGRXFLTNDFLLDQET
SELVKHVTSLAHFQQELTQLAEAQPQEIGPPLFNPGXLVLVKDXPTLSPSLSPXREGPHTVLLPTPPAVKVTGIDSWIHH
TQVKAWKAEGATPDSPEERPEYQCEEIGDLKLKIIKDK
>HUERS-P3_gag#LTR/ERV1 1522-3020 via tfasty with HERV17_gag, 1 frameshift. [Primates]
MGNRSSSACTPLECILKHWDSFDPETLKKKRLIFFCTRAWPSYHLGDEXAWPXEGSLNFNIIQQLDLFCRQEGKWSEVPY
VQAFFALRDNPDLCKRCKIDPALLAIISGRXKENDSPKLEKQLPGEPSEAAIECPSPSSPPYLGPPPTTPPAPPPPPSPK
FPTPPPSLLPLQEMPDGGDATRVQVPFSLQDLRQIKGDLGRFSDDPDRYIEAFQNLTQVFDLTWRDVMLLLSQTLTXAEK
QAALQAAENFGDEQYVSYSRPKGKRENREGEEIGETPFPIGREAVPLDNPNWNPNDAGDEWKRKHFLMCILEGLWRTRAK
PLNYSKLSMIXQKPDENPAAFMERLREALIKHTSLSPDSVEGQLILKDKFITQXAPDIRRKLQKQAIGPDSTLENLLRVA
TSVFYNRDQEEAQEKERKHKXRTEALVAALQACKVQDPRGASASCYQCGKSGHFKKECPGSKKKPPRPCPACGGDHWRSD
CPRRRRSLGSEPVSQMVQQD
>MdoLTR3_p2#LTR/ERV1 2190-3848 via tfasty with ERV9_MD_pol, 1 stopcodon. protein unique (so far) to marsupial ERVs (ERV9_MD_pol, ERV25_MD_p2, ERV47_MD_p2).  [Monodelphis]
RKEXENFKILVVEKQIVGQDAKGSNLSTKQKAIIEMESEIAQIIADMKHDIYGSQYMGTQNCMEKSKEQIKSFLENFLAC
RMGLDSGKSNGASKSFKQQLKYPDHSDKIAKxDIVARDFGADTFIHLRGERKENEGRTNLNPKAKDFYPRNPITLKDTSP
GDGFSTDQYQTSNDXLFPEPETAKQXKGVGTEESLIVKPHPSSSQTEINTNTNLSSEQAVSSQTAVVQSDTELVNNSGLN
EGGITKEGMVDCTITSTKPETSTSYTXALQTLGQESKDDNRKPVHANTIIANLQETPEPYLGTEVGEQKHKPLTDTGASG
SVLKSFPEDTTIEGMVSMSTDSQEGVDTQEPDPKDMVEPVHSSNIIADLQEAVNPQESNLSPQNXELEHITGQQXEKELG
NTEITEIGSDQDTKPGLTTPDTELQQVTERKLMKDLESTEISDQESDSDPDDTVPNGTIIVEQXSDEEQEPYEYIKLYDK
VHKDLDEWDTNWHSEHLNSEQTSFSDSDSDXAIENIGNSLSVEEILYITGVSSXEEFCKKYDLGDSDTELEVI
>SFV1-1_Gav_env#LTR/ERV4 5393-7072 via tfasty with SFV1-2_Crp_env, 1 stopcodon. SFV1-5_Crp_env near-identical.[Crocodylidae]
MSISSSNHRDKVCPTTLKWRRQLTQRNTTMMPTKNNRVTLPLYCIYVTFTVTLQSDEPIVEPDCAPNTVLHLLSLWANAT
GEGQAEDGLTACLPIPLSVEDPVLIPYLSPFNVSEWFSQVSQGPKTSINVSMCGGLVSIDFSWPHNFTLADLSADPPRKG
CLARGAPCACSAIPWGMHPHGNDWLRPDMSLTWDPCLITPPWYLELTPHGEKTVSVLTLSPVIKPTPLVRWDASLAVNLT
xPGPLGNDSWFGFYYPNLRAILLSAACHGVKTFVRQSGPPERERHAFPFPGLCSEITTPAPFGLVWACSDGRLYTALPAT
LMGLQCFLSSVSFCPPLQASSAHPPSPALHRHTRSTTPVWSSLTQGERTTQGLSWGFKGFFLWGYAITKARIALAELSEQ
VELLANCTATGFELVNEQLQATSQMTMQNRMALVALLIQQGGLCQYLNLTKNMCCIVISNVSLPLQDQVTEIRKIARDVN
TISGIGQGWLSRIFSWLGWDASSWLVNLLTPLLSLLLILIIVNTIVCCVFQFLKHKLSSLSVFVYTSVPTHINFKDKDEC
>SFV1-1_Crp_env#LTR/ERV4 5219-7063[Crocodylidae]
MFDRQDKRADTEPLLRQTTMPLPRDRRVSPLSFAGLWERLVGRSKEPIAAVRPSRRRRKLWLIFLIYLSLSAGIILMCVL
HRGITGHTKRTLITSPSSIADNLFLRTSREWMLLTGHTSGSVCGHTPTSAADSPFRIAVTPVNYSDLFLSFVRASPGNET
IRYLACDTSCSIQFLTYTWEWNGTSPINCTVQGIPQDCFNFTHGPPWGAPHSIVPDPDNVTLPIPPLPQTVLRTVKIKFS
TPGTPCYWPGCHTTPCTFRTSMARRSFEDAEVFRLFPVKAFITMGSHFGPPAHRAAFKLITRRFSPHLKPLLALFNTRHP
PPIALIPPPHDTMFYCQQDENSTQAVLYSHFPYHFNVCCILVQVTLCPYEFSNVTHWTAPLTFPNHVRSTRNVIPNEQIT
GVMGESKFWSNMTETERRKFTTGWTLYGMFVTGASASALAIQQLQTLELLARLANSTADALEVFNRQLQDTSKVAFQNRL
VLDFMLAKEGGFCAVLNLTAPDETCCLVIYNASEPLSRAINQIRKVAEDTRTIVQTPFNWLAETFQSAFNLRLSPWLANL
LTPLFTVLIVVLIASCCVGLIIHCIRRQITSAMQVTYYECLPQTNNTCREIQSVL
>SFV1-3_Crp_gag#LTR/ERV4 33-1952[Crocodylidae]
MESELIRHCPWRAGDRDCASSDDLWAHIAYHQADGLANSLITGYMSLAGDKGGREWAIQLAPSSFGCVMSRKGVTFRPRD
EVGSLSLARVKPDRAVNPTPAQEFARCIRHVREGGEGTPPDKFNCPNLSPDSRAHELLTQLRETLELEGRTVTKWTGPKW
DKGKMINVLFRTVSILLREVANFDSQLSTASKNAEELVIKCSTSPPPKDGAEQKQKSQLENGAEQKGKPTPENGVDNKQP
RSEIGAEPKGKLYPSLEELTANHETSSNKATPTSGQGYPPVTASLTKSDLTSPDVITPTPWPGRPPTPPTLATAPPPPYP
EEPDGTRLVKSRSKADEKELITSALPVSVVKYTATGGGQPQATITVHTRTRAEMSDLRKETGIQPDETPIVWMGRLVIEA
ANELIDAEEAIHLVRNTAWSRGIVTDPQSVTANDQWPLALPALVVDAIMRKTHVWHDGGSKQPNAVHLIHAVIGASYAQW
NPVTDPLNLTILQQATAWPHRYLENPGQVPCLHQAVEAASEVYGGPHELTVKMVLTPSINTPVTNIWALVSRLQSAMTSK
PTQVHVTAYPKQTPSPEKIGRQSASRAAPPQRSPEERARFGFLLNNTKLNKAQLRALGDEGQKLLAEQLGFKYNEQPKNE
>SFV1-6_Crp_pol#LTR/ERV4 1865-5149[Crocodylidae]
VTAVGVNPVTGGCADSEKQNNEQTTDCELEQKTVTPTVEGGKRYGIRKNTVDTVKENDDPWKVVRFSEMVPEEDTVSEMV
REKDAVGQTIHGEDGEVMMTSFMKLLDDDQRPYATISIQNPDDPLDETIAKFLLDTGAQVNVIKPSIPHKRTNKIMMVQG
LNSASATSRVKIFVKDHKKPLDAVLGHVNILGIPGIRALQLKDRVLEALPINILPEREWHRPSLRITTVWRYTPIPTKQQ
FHDQLEVLLKSLQQEGSITPVPASTRLSPGWGIPKPEKPNEVRLIVDYREVNKRCTILTQPAPYTLIQSLNEMAIYQSED
WVGTTLDLKNMFFSIPIDDREGVLNMCVRGRMYRWNVCPQGYCNAPALATGAMNESLDRFYQKHPEARQVKLWSYIDDLA
IMGRTEELVRSITTALVHHLEDNGWIINEGKSQLTPTNQISFLGTTFTGPRWYGVSHEAINIDLPEKYPTKKAEFQSILG
KLNWYRHYITPQHLPVLARIQRQIRKRTRLKTPWSPKDARALDELITSVRNTTLHAIDFKTPLTVTIGFTTEHLFVTVTN
PEGNLVFVAHRTLQMAQHRYGVVGKTLLAAQLAEPLTIGRGKLRATGATLLPRLIHDRPDPCFQGELSTWSALVLNHLYQ
WHAWKHEDVSPPANITETSRITLYGTAQPAWMASDGTTRGGGKYGFYCHPCHVHQIHPGCESAQKNELLGFREVIQHCLQ
HHDGTLPIPVIAIDSQYIYRIVTGTASPSENADLWQEIYDLLSEFTTLPLIRHTRSHQTDTDPIHETIDQLLGVLTVKDI
ENEVCVDPYLEWLHEHWGHPGPRACQQRWRKESGNHSKHGTHIDWKRVTQACKTCATEKAHPTSNLKGALNPKTFAPGRS
WQVDLLGPLPGAAAPNKGLIVIDLGTRQVTVVPLRKTHAAAVISALISIFAVWQVPKVIQSDGGPPFTSIAIEKLARLHN
ISWHHHMPYHPQSNGVVERAVGLYKEALHLKGQGSYKNWTKFNHEVLTNLNTGKEMWNQRDIEPVEPWKQKFKTSELVWV
TLPNPKNRHPKVLKGVIEKAEYYPNTYTVELGESGQKLLAHHNWLSRWSSTNTVT
>SFV1-4_AMi_gag#LTR/ERV4 12-1946[Crocodylidae]
MGSQGNVVVEMDLIKCCPWRTGGRRVDNAEELWAHIAYHRAAGGEGENLLAXYFSVRGEGPITKEWKVNMTPAAFGCVMA
NDRIRFRPVDTASSLPLAEAKVKEEGGPTPAQDFAXCMRXLREGGEPTXPDRSNRPALAPGSRGQEFLGXLREGLETGGR
HTARWSGPKWNKGQMINVLFRXVVGLLRENANLEAQLHTVGKESMEQAARGSEQPLQDGGRENKKDRENEGQPHGGGSVM
SPPMAPPPGKGREKIGTAHGEWLATSPSLAPPHDVMPTMGPPTEATSSERPPPXEGDKLCPLLXAEGEQLYPTTPAERKR
LYPALPAEGEELYPALPAKEEKLPXTTAYPIALRKHIADAQGNTGTTVTCRTRNRQEMQELCRESKILAMWIGRLVVXYG
SEALDRDEASALTRQAAWSGGHATDLNIVMESTLWPIPLPALVVEQVSHKSHVWHEGRPPNTSAEQLLLAIIGVSYLSWN
PRVHKLGLKPECYKAKWAHRYLRDPGAVPATLEAIDACVEVYGGIETITLRLFLNPXVGQPAGSFLSHLPRLQALMNKXE
KTFPEMKDLRSSHPIETSKPKYQEXNIQRGSSQLPVRTPEERAMFGFLLYHTKLTKQQLRTLGDEGQRHLAEMMGFQFRE
KSKND
>LT-47_AMi-I_gag#LTR/ERV4 12-1793[Crocodylidae]
MGSGESTLELELVKNCPWRGEKRQVKSFMELEAHIAYHQAGGTGERFISGRLSLKGEEGASEDGAPREREVYLHPAAFGC
MMSDERVLFRPLDTVSLARVNPAGAVNPTLTRECARCLRYARESEEPVPIGRFSPFMVASRLRGRELPSELREDLETEER
AADERVAPRYDKGGELSATFRTITDLMNKNLSLKAQLRMAVQAVKEAAERRDPETPAQDGAEQEGDRVEEPEKKGGASEE
PARVRSATPPIDAASSPATPPSDAAPPLTTTPSCRRKGESSGGVHPPLLPEAVTAAVTPAAAVQPTTTTNRVATAYYART
RTELQDLCRESRIQPEETLAVWLGRLVVELGSDLLNQEEASFLVRQASWSRGHVTDIDMIAVNVHWPIPLPALVAGLIGQ
KAHVWHDGRPEHTGAEHLMLAIIGVSYCAWNPRACALGLTSLQRIRPWPHRHLRDPGTVPVTVHSLDSCLEVYGRKNIVV
LRILLNPMVNQPVSNLLRQLSRLRILMEPRLSSDRDRRHPTEIQGTRHHESDLPSLPQRTPEERYMFGFLLQRSGLNKRQ
LRILGDAGQWQLAYELGFRYLEELDDGSSTISSS
>PRIMA4_pol#LTR/ERV1 2543-6328 [Primates]
GCSEEVQGFHLSKYSTLTNKLGEINIIINHELTTALIDTGATISLINPTLFRNPIPRSNERINMVGVSNKTISCFKSKPV
PYHFIRFSPPAAGSKCDTLSRSHMFLICPGAPVNLLGRDLLNIHNAHISFSSKGELFLELEPGDQKYQIKKCPDNVPQFS
TSNVKTSSCDQENKMETEKEILGEKREHWNKEQETVKLLLASPVFLLTPEAEHLLKDVPSHLWSQSNTDIGKIFSATPIK
VEINPKKPLPNLKQYPLRQEAIDGIAPIIQDYLKKGLIIPCTSPCNSPIFPVKKPSGRGWRFVQDLRAINNIVIPRHPVV
PNPHTLLSAIPTTSQYFSVVDLCSAFFSIPVDPDSQYLFAFTWKEWQYTWTVMPQGYTESPTYFSQILKADLEDLIFPQG
STLIQYVDDLLLCSDTLSSSQEDSLYLLKQLATKGHKVSKDKLQLCLPQVKYLGHIISVKGLSINPDRVRGILAFPMPVT
KKQLRGFLGLAGYCRNWIPNFSLMAQPLYAYLKNEQPDPIMWTPEGQSAVQQIKEILTNAPALGHPNYKLPFSLFVHEIG
GTASGVLTQKHGDHQRPIGYYSQQLDPVARGLPPCVRAIAATALLYKSVEEIIMGSPLTIFVPHSLETLLNSHHTQHLSV
NWLASYEILLLSSPNITISRCNNLNPATLLPGPSDKTPHDCVLMTDRLLTPRTDLQEMPLDNAEIEWYTDGSYLRGEDGN
FRAGYAVVSLLEVIEASPLPQARSAQAAKLIALTRACQLAKDKAANIYTDSRYAFGVAHDFGMLWKERGYLTSSGQPIKN
GQQVSELLEAILKPKRLAIIKIPGHSKLDTTESQGNQLADATAKRAAFEPPAPIREMAIKPETLKNMLKETQSIAPTKEK
STWKQAGGYLSPETEIWCGPNNKPIIPMGCQVPLMEYVHNLTHWNPDKMISWCKQYYWKPSFTVAQKVYSRCVICPKYNP
GKPLHGAQGHFPLPAGPFEVWQLDFIQLPSSQGYKYVLVMVCMFSHWVEAFPCRQATAMAVGKILLEKIIPLWGVPCELH
SDRGTHFTGQVIQNICKIWPIFQHFHCAYHPQSSGLVERTNGIIKTQLAKFTEAFHLPWPKALPLVLLTLRSTPFGKHQL
SPYEIITGRPMCMGTKITNPTFLKGDILQYCEGLIYHLKKSQDLVKNSFHSALPEDKVPGHDLQPGDFVYWKRHLIKDSL
QPRWKGPYQVLLTNPCAAKLEGIDSWIHISHLKKAQPPEWTVTPTKDLRLQFTKHRPSTQD
>MER84_pol#LTR/ERV1 2360-3925 via tfasty with CarERV2_pol, 4 frameshifts and 2 stopcodons. fragment [Primates]
FSISMDEPWVNLIVAEQEIMFLIDTGFSFKRLLXPNCQSSIFLTGIDGKPQxGCFTPPLPXKMESYSFTHVLLVLPSCPV
PLLGHDLLTKLQANLQLRPHLLAVLTHTSPKEPLQXIEPRILKQVPFEVWNXSAPGRSLSAAPVVIQLKNPNEFPRTPQH
PLEPEAxKXLKPXMTKLLGHGLLXPCNSPCNTPIXAVSKQDGSYRLVQDLRIINEAVIPIHPIVPNPYTLFGQIPSTTAW
FTVLDLKDAFFCIPVHPDSQFLFAFEWQDPDTQITQQLTWTVLPQGFRDSPHLFGQALAKDLSTLQLLPDSNLLQYVDDL
LICSPNKAVSDQNTVLVLNKLADCGYKVSPSKVQTSTQRVQFWGLILTPGTKSLSSARKDLILNVTTXXTKQQLWSFLDM
AGFCRIWIPSFGLIAKPLYEALKGTEEQPLSWTNDMKHALNTLKQALISAPALALXDLTKPXFLYVHERRGXALGVLAQN
LGPSKCPIAYFSKTLDLVSQGWPACFKALAAVALLVQESLKL
>RNERV19_env#LTR/ERV1 5734-7694 via tfasty with GALV_env, 1 frameshift.  [Rattus]
MNGLWKGLLTLLSFASAAASSRVRTSNKDPHSPQQLTWQVFSSTGDLVWSVTGKHPLWTWWPPLYPSWCKLAAGAPGWGL
EHLAPDEVNDMLDFSPHIYTSPRFGGPGAARAPPPKPDAGCRTPGARTEXTKTPFYVCPKNRPLRSDMWKCGDESHFFCY
YWGCETTGQTDWNPSSTWGSIDVKWAKGRVATLNITFTQMGRKYTKDWLQTRRWGLRLYVXGADPGIXLDIRLKVEPVSP
KVIGXNPVLRNQRPLTRPRPKATTTLKPETFTPAGDTTTEDYLAPHLPGAQERMFRLVQGAFQAXNYSNPDLXSECWLCL
SXSPPYYEGIATSANFXKDTNPEACLYTNKPRLTLTEVSGEGTCVGKVPPTHXHLCRYVXXVDTPPPALHSYLIPPXGYW
WACSSGLTPCLADSVINNISDYCVMVQLVPRIYYHPSEELLSLYGXXPRTKREPISLTVAVLLGLGVAAGVGTGXAALIX
GPQQLXQGLTALNSAISEDXEALEKSISHLEESLTSLSEVVLQNRRGLDLLFXKEGGLCAALREECCFYXDHXGTIKDSM
AKLRERLDKRRREREATDNWFQSWFNKSPWLTTLLSALXGPLXILLLLLTXGPCIINRLIAFVRERISAVHVLMLRQQYQ
AVRSEEPLDAGPIM
>TguERV7_pol#LTR/ERV1 2447-5932 [Estrildidae]
RCQGLYNLGSRTSREPLIKLKVGPQKQELVFLVDSGAEKTTVQRLPPGCIKGKDFMTVIGAKGEPFQVPVLRNVEIESDN
KICVGDVLLVEETEYNLLGRDLMVMLGISIIAKDSQLMVSLYNLTTEDEKKIDPRVWHIPGEAGKLDMEPIHIEIERPXD
PIRVKQYPIPLEGRKGLKPIIEDLIKRGTLEPCMSRHNTPILAVQKSDGNYRLVQDLRAVNQRTKTLFPTVSNPYTLLNN
VSPDDKWYSVIDLKDAFWTCPLAEGSRDYFAFQWEDPDTHRKQQLRWTSLPQGFVDSPNLFGQALEKVLSEFVPVQGTKL
LQYVDDLLVAGSKEDEVRTGTIALLNFLGGRGLKVSKSKLQFTEPEVKYLGHWLTKGKKKLDPDRVAGIIALPPPQTKRE
VRQLLGLLGFCRQWIEGYSEKVRFLYDKLTTDRLKWTDKDEESYRGLKETLMAAPVLSLPDLKRPFQLFVDVNNHTAHGV
LTQDWAGAKKPVGYLSKLLDPVSRGWPTCLQAIVAVAILVEEAKKVTFGASLTIYSPHNVRSILQQKADKWLTDARLLKY
EAILIHSQDLELKTTPAQNPAQFLFGAVQGHPPHDCVEMVELQTKIRPDLEEEELEEGEKWFVDGSARVIDGKRKSGYAV
IDGRTGTVIESGPLSAGWSAQACELYAVYRALLGLEGKKGTIFTDSKYAFGVVHTFGKIWEERGLLNTRGKGLIHEEXIK
QILKAIRGPEAIAIVHVKGHQTGMQFRARGNNLADKEAKSAALLKVSAPEIEKGDAQEFPPHPSETEXEAYRKIGGQLEG
GKWKLPDGRELLSKEYTRKILKRLHQQTHWGARALAEQFLRFFGCKGIYELAKQEVQGCITCKKINRANSKRLMGCRPAA
YRPFERIQVDFTELPKVGRHKFLLVMVDKLTHWVEAFPSSRATAQTVSKILLEEIIPRYGLVSYIDSDQGTHFTSKIIKL
LADALGIRWEYHTPWHPQSSGQVERMNQTLKAQLAKLMLETKMSWIKCLPLALLNIRTMPHSETGLSPFEMLYGMPYTHG
MPVGHPRLEDKQIQPYLVELNKNLEELRKQGVIMQNSPLGFSIHKIQPGDRVLVKTWREAPLTSQWEGPFLVLLTTDTAI
RTAEKGWTHASRVKKVDLQSPEWKITPPPGNLKITLQRSSK
>TguERV3_gag#LTR/ERV1 1849-3501 [Estrildidae]
MGAKQSKEVPKASPLGCVLAHWKEIAGKGGMENKKSLIKYCSHWWPLYRLEEGARWPPTGTLEYNTLLQLMLFLRREGKW
EEVSYCDMFFSLRNNPDWQRDCGIRAPSDPLVLALEKENRSKMGELKRCCSACSIRQRCTRTDKVYRTALEEQERDLGNL
FSPHLGGQGGRGGDLGGTSAPPTPPPIPPIPPAPPIPSIPPIPPAXPVPSIPPIPPIPPTTSTPTPSPPLEKTPAPTPPS
SPIASRTRGQILQAPXRETVTPGGEKILVKVPFSTLDLEAWERVAGDYRNDPVNTAKRLRYIMKQHNPDWGDIQLLLDAF
TETEKQLVLKTAGDLVADHFRQQQVDLREHFPLQDPGWNPNQPEERQRLKKYQDWIILGVERAMPKTINWSALYAIKQGP
SESPTEFLDRLRNAMRRYTPLDPASEVGIQQLINLFLGQSTGDIRRKLQKIREEDARNLETLLGEAWRVFSNREEGYKRG
MKNLIAIVQEERRGKRESGQGPSKQGPPRLGRNQCANCKRQGHWKKDCPERKQNGQGNQRGGVVAHVQED
>SHACOP17_MT#LTR/Copia 104-4055 via tfasty with Copia3_OS, 1 frameshift  [Medicago truncatula]
MKNLLISQKLHKALVGKEQKPVSMKDEDWEELDLEARAAIILCLERDVAFLVNEEATTAGVWSKLEKTFMTKTLTNRIYL
KSKLYTCKMEEGTSIRDYVNKFDRIISDLKDIDVKIDEEDQALILLLSLPESYENLVQTLMLVGDTLTMDETRTSLLADD
LRKVATSGMSSSGREHREQAQGLFATRGRTNERGQGRGRKSRSKSRAPAERTCFKCGELGHFKANYPNKRVLFQNKQANN
GNNSKGKQQDLSKASYVSNDEDDCFSVSERDHDISGKWMLDSGASHHMCPNRKWFATYQSIDGGTVLMGNNHACKIMGYG
TIQIKMHDGALRTLMNVRHVPNLRKNLISLGVLEENGCKIVMEDGILKVVRGSLVVMKGVRHRNLYPLIGKTVTGDLAVG
IIGSKDQTECTRIWHMRLGHMSEKGLSLLGEKGLLKNMKKPCMEFCEHCVYGKAHRLKFSTRKHKSRGLLDYVHTDVWGP
ASVTSKGGSRYFVTYVDDYSRYAWIYFLKHKNKVFDIFKCWKAMVENRTGRKLKTLRSDNGTKYTDGAFKRFCDQEGIVR
HWTVRGTPQQNGVAERLNRTLLEKARCMRSNSRLDREWWAESVATAGYVVNRSPHSSLGGDTPYKVWSGEYADYDKLKIF
GCMSYYHVKDNKLDNRAKKAIFLGYAKGVKGYRLWCLEDSKFVISRDVTFDEKSMVPNYGDVQVSNQRVDIESKDQPDSS
HDQVEHPSVTQDDEEDELDNEVQQGKSHVLQQQLQESLDTTRPKTNYKTVQKLGSDKPLRHYGQVNLVEYALSVEDDEPV
TFKQAIKDKDKESWLVAMEEEMQSLHKNKTWEVVPLPVGKSAIGCKWVYKRKEDHTKSCGTRYKARLVAKGFAQKEGVDY
NEIFSPVVKHTSIRVLLSLVAHGDLELEQLDVKTAFLHGDLDEEIYMYQPEGYKVEGKESQVCRLRKSLYGLKQSPRQWY
KRFDSFMIKQGFSRSSYDSCVYIQKLHGGDYIYLLLYVDDMLIASKGKVEIDKLKSKLGKEFETKNLGAAKKILGMEISR
ERTNRKLFLSQKGYLERVVERFGMKGSKSVVTPLAPHFRLSGNQSPTTAEDKENMKNVPYASAVGSLMYAMVCTRLDILQ
AVSVVSRFMANPGKAHWEAVKWILRYLNGTINTGLCFGGDTCQISGFVDSDYAGDLDRRRSTTGYVFKIHGAPVSWRSML
QSTVALSTTEAEYMAVAEAVKEALWLRGLLGDLGVTQERVSLMCDSQSAIHLAKNQVHHARTKHIDVRYHFVRDVIEEGR
ISLAKVHTDENSADMLTKVVSGGKFQHCLDLLNILTC
>Copia-67_Mad#LTR/Copia 94-4086 via tfasty with Copia37-PTR, 2 frameshifts. [Malus x domestica]
MAGEGSGFVQASIPKLDGHYDHWAMLMENFLRSKEYWSIVEHGIPAAAEGASLAEGQRKVLEDQKLKDLKAKNYLFQAID
RAVLETILNKDTAKEIWDSLKQKYQGTARVKRAQLQALRKEFEMLHMKTGETVNEFFGRTLTIANKRRINGDKLTDVEVI
EKILRSMTPKYDYVVCSIEESKDLDILSIDELQSSLLVHEQRMIGHVVEEQALKVAYEENSGGRGRGRGSFRGRGRGRGR
QNFDKSTIECYNCHELGHYQYECPKKDKEAKANYAEASEEMLLMAYVDTQEIKEDIWFLDSGCSNHMCGKRELFSDFDGS
FRETVKLGNNTSMAVLGKGNIRLQVNGMTQVITGVFYVPALKNNLLSIGQLQEKGLAILIKHGRCKIYHPERGLIMETVM
AANRMFILVAQYQLNVQACFNALTDDPVQLWHCRYGHLSLGGLKTLQQKQMVSGLPQIKDSSRVCENCLVGKQPRDPFPK
RSTWRACQILQLVHADICGPIKPTSNSKKRYLLTFIDDFSRKTWIYFLIEKSEAFRTFKAFKSLVENETDASIKSLRTDR
GGEFTSHEFVEFCVENGIQRQLTAAYTPQQNGVAERKNRTIMNMVRSLLTEKKMPKTFWPEAANWTVHVLNRSPTFAVKN
KTPEEAWSGTIPSVSYFRVFGCISYVHIPDNKRTKLDDKSMKCVLLGVSEGSKAYRLFDPVSQRIIISRDVRFDENSSWD
WDEHHHEAVIADLEWDDDEDKAIEADEVDSQGGDEDGSEEMEMSTSNNSGSDEVSEASLSSPEERRPRAPPVWMRDYVTG
EGLSEEEDMVHLALLADSDPIHYNEAVKSAKWRKAMDVEIAAIERNNTWELTDLPQGGKTIGVKWVYKTKLNENGEVDKY
KARLVAKGYAQEYGVDYAEVFAPVARLDTIRVVIALAAQREWTIHQLDVKSAFLHGEIDEEVFVEQPPGYVQRGKEHKVY
KLRKALYGLKQAPRAWYSRIEAYFLKEGFVKCPYEHTLFIKAGDGGKILIVCLYVDDLIYTGNDECMFTKFKQSMMNEFE
MTDLGKMRYFLGIEVLQQVDGIFICQKKYAQEVLERFKMENCNPVHNPIVPGTKLTKDVTGEKVDSTFYKQIVGSLMYLT
ATRPDTMFVVSLISRFMECPTEMHLAAAKRVLRYLKGTISLGILYKKGGHAELRGYSDSDYAGDLDDRKSTSGYLFMLSS
GAVCWSSKKQPVVTLSTTEAEFIAAASCACQATWLRRIMKELGQAQQDSTTIFCDNSSAIKLSRNPVMHGRSKHIDVRFH
FLRELTKDEIVQLVHCNTQEQVADILTKPLKTDAFLKMRELMGVCLEPGVN
>Copia-66_ST#LTR/Copia 79-4506 via tfasty with Copia-81_ST, 74.9% SW:3836, 2 stopcodons. [Solanum tuberosum]
MTGEQSTAEMKVPTTTMIDHHHPLYLQASDSPGLVIIPIKLTGPENYSLWSRSMKLALRGKGKLGFVDGNCTKSNFKGEL
EELWEKCNTIVLSWIGSTVSADLIPSIIYASNAKKVWDEFKERFDRSNLTRIYYLWAEIANLKQGTDSVTNYYSKMKDLW
NELDVMVPLPSCDCEESIAYIDHLKSQRLLQFLMGLNESYSNLRSHILSRNASVTVNEAYATMAQEESQRSLGVVDAQKD
PLTMMTGRAQGYRSTRPAGHGGSGGAGRGHEGSGGAGIPCIHCGYKGHLKDNCYRVVGYPSDFISRRKASQQNQQAQSSQ
GKPTANTSTTTKSGVPQRTGSDGSSSSSGSGYFLTEQQYQELLGKQDHTNSISECVSNMAGIHFLLSNVFAYEWIVDSGA
SHHTTPCKDLLFDIRKLDNHLSDKVQIPTGGRCQITSAGNANIFGTSQIQNVLHVPDFKFNLLSASKITKDLSCVVLFFP
DFCVFQGLYNGKVLGIGRERDGLYLLKEQVTPTTNVVSFKHQAESVLWHLRLGHPSSTVMHHIPSISKYVSNNMQDNCHI
CPLAKHHRSTFPTSSSQSLACFDLIHVDLWGPYRKPTYDKKYYFVTIVDDYNKYTWICLLHSKCEVTTVLKNFLCMIKTQ
FNVNVKSLRSDNGIEFFNTQCMQLLASHGIIHQSSCPYTPQQNGIVERKHRHILEKARALKFQSGVPISFWGDCVKTSVY
LINKLPSPVLTGKTPCELLYGKMPILDHLKVFGCLCYANSLSRSDKFAARAKKTVLVGYSETQKGYRLYDLEDKIFFVNR
DVDFREFIFPFKIDATSDLDMFHITPIDPFIPDNAPGPLDIGKHPQTLPDLVENMEDPTLLPKEVQNPTLVADDLHGPPL
VDIEVQDAIVIDSTSATSDHSRPVRATRPPIWLRDYVSTIQPKGTCSYPISQYVSYAHLSPAYQMYLANVSIPTEPTSFK
MASQDPRWIHAMQQEIDALEANHTWELTALPHGQKTIGAKWVYKIKYKANGEVDKFKARLVAKGYTQREGLDYYETFSPV
AKMVSVRTVINVAASMECDLFHMDVSNAFLQGDLDEVVYMDLPQGFHRxGETKVCKLLKSLYGLKQASRQWNIKLTSALM
ADNYKQSSHDHSLFTKTQGSNIVIILIYVDDLLITGSNQDLIxAAKQYLHSKFKVKDLGPLTYFLGIEVMRSKHGALLNQ
RKYTLEVISEVGLSGAKPASTPLEANIKLTSVAYDDHLGNVTNDPLLEDISAYQRLVGKLIYLTITRPDICFVVQLLSQF
MQQPKRSHWDAALRVVRYLKHSPGLGVFMKKGSELKLSAYCDSDWAACPNTTRSVTGYVIQLGGSLISWKSKKQHTVSRS
SAESEYRNMAAVVSEVIWLIGFLQDIGVKVPTPIELFCDNKAAIQIASNPMFHERTKHIEIDCHFARERFQAGLIKPAHL
STTLQLADLLTKGLAVAQHHFLLSKLGVLDVFHPAA
>Copia-67_PT#LTR/Copia 169-4236 via tfasty with Copia41-PTR, 84.2% SW:4635, 2 stopcodons. [Populus trichocarpa]
MAETNFMQAAIPRFDGHYDHWSMLMKNFLRSKEYWQVVDSGIAESETGIILTEAQLTELSSLKLKDLKAKNYLFQAIDRS
ILETILSKDTSKQIWDSMKKKYQGSSRVKRSQLQALRRDFETLQMKDGESVTEYCAKTMGISNKMRFHGEKMNDTVIVEK
ILRSLSSKFDYVACSIEESKDIEALSLDELQSSLLVHEHKMKRSTITEEHALKASIFTESSHIRGRGRGRSRGRGYRDNK
DGGRGRGREQPFGRTNVECYRCHRLGHYQSECYTRLPHNKEKWQKSNFAENKEEETLLMAFHTKDNISEPDVWYLDTGCS
NHMCGSKSFFSNLNEEFHTTVSFGDHSKVDVMGNGDIQIRTKKNTIETISNVFYIPDLKSNLLSLGQLQEKGYVTTIKNG
VCEIYDPTRGLVAHAKMTPNRLFSLQIQIFQHCLVAKEVDSTWLWHYRYGHLNFNGLKTLYQKNMVIGLPNITHFNKVCE
HCVVGKQHRKEFPQRSTWRAKKFLELVHSDMCGPINPSSNGGKRYFITFIDDCSRKTWVYFLQDKSEALSAFKSFRTYVE
NEVERTIKTLQTDRGGEFCSKEFQVFCDEHGIQRQLTAAYTPQQNGVSERKNRTILNMVRCLLTHMSVPKDFWPEAVKWS
IHVLNRSPTFAVQNMTPEEAWSGRKPSVDYFRVFGCIVYAHVPDAKRKKLDDKGVKCIFLGISEHSKAYKLLNPITRKIV
ISRDVVFMEDSTWNWSEQSANQQxLPILFDENEADVSDSSDQxLQHQQHQQSLRSDQEVPQLCLNEDQPAPERSRSQQRR
KRPAWMEDYEVSGFVQTDEQSDDFSHYAFLSDCDPITFDEAAKESKWQKAMDEEIMSIERNNSWELTTLPEGQKSIGVKW
IYKTKLKEDGRVDKYKARLVAKGYKQEFGIDYKEVFAPVARMDTIRLVLSLAVQNSWLIYQLDVKSAFLHEALDEEVYID
QPPGYVKQGHADQVYKLKKALYGLKQAPRAWYSRIDAYFKREGFLKCPYEHTLYVKSGVDKKVLVMCLYVDDLIYMGNDR
SMFTEFKSSMMKEFDMTDLGLMHYFLGIEVVQLSDSIFISQKKYAMEILDRFKMTNCNLVSTPTDLSLKLVKDGAGEKVN
ATLYKQIVESLMYLTSTRPDIMYAVSLISRYMECPAEAHFLAAKRIFRYLKGTADYGILYKRNINSAMIGFSDSDYAGSL
DDRKSTSGFVFMLNSGAVSWSSKKQQIVALSTTEAEFVAAASTSSQAIWLRRLLEFLHNNQQQGPTLIYCDNMSTIKLSK
NPVLHGRSKHIDVKFHFLRDLCKEGVIDLVFCKSEDQIADILTKPLKPAIFVKLRNLLGLCSSKAVIRDRVAAVNS
>Copia-68_Mad#LTR/Copia 115-4223  [Malus x domestica]
MAGSGGGELRAPVFNGENFDFWQIRMKTIFRSHELWNIVEKGFTTSAKGEGDLTEAETKLRSENLVKDARALGIIQGAVS
DQIFPRIATLETAKEAWDILKQEYVGDKQVRSVKLQGLRRDFEYTRMSESESLAAYLARLFDLINQMRSYGEDLSNQRIV
QKLLISLPKTYDSIASVIENTKDIDVIDAQDVVAILKGFELRLIRHEESSTERAFASLDISSKNSKFGNQHTNTGGSKYQ
KNFKFKGKQWTNRFTPSVRNEANNTGGACKYCDKLHYGECWLKGKIKCHKCGKPGHIARICNQNKNAQQGNFANKVGEQR
NFTNKVGEPGNLFMVKQSTEVKAVSDAWYIDSACSNHMTSREELLVEIDRSIKAKVQVGTXVLVDVKGKGTLVIDTDKGK
RYIREVMLVPGIAENLLSVGQMTEHGYFLLFGDYKVDIFDDRTLTNLVVSVKQKGNRCFPLVFKSNDHLVLKTNVHQSST
MWHKRFGHLNFRSLQQLQEHDMVLGLPEMHDSEGVCQGCAFGKNHRVSFPRESIWRARMPLELIHSDVCGPMQTPTMSGN
RYFVTFIDDYSRMCWIYLLRHKSDVFHVFKKFKAMVELQSGFSVKKLRTDRGGEFTSNEFEQFCEALGLERQLTVAYSPQ
QNGVAERKNRTIVEMAKCMLHEKGLPYSLWGEAVVTSVYLLNRCPTKALENVTPFEKFSGRKPGIQHLRVFGSLGYSLIP
GNLRQKLDETSVIGIFIGYGTCEKGYRLLNPENQKVIISRDVIFDENGTWDWDRQKIKEVYIPIAASESSEMKEADEDSD
SMEQAVAEGSQTQLTDSPLIESGSASDSISASQTDHTPLRYRSLSEIYERCHVCIVEPESYYEAAQDEAWKKAMKDEIGM
IEKNKTWELVKRPSDKPVIGVKWVYKTKLNLDGSVQKNKARLVAKGYAQKPGIDYNETFAPVARLDTIRTLIALAAKNKW
KLFQLDVKSAFLNGVLEEEVYVDQPDGFIVQGEEDKVYRLHKALYGLKQAPRAWYGEIDSYLTLCGFKKSTSEATLYTKW
RKSSEMIIVSIYVDDIIYTGSCQELMDDFKSDMMLKYEMTDLGLLHHFLGMGVMQTEEYIFIHQRKYASSLLKKFGLQDC
KSVSIPLVPSDKLRKEDESGTADEAQYRQIVGSLLYLTATRPDIMYAACLLSRFMHCPTNKHLGTAKRVLRYVQGTLDFG
LEYKKGKGAILMGFCDSDWSGSEDDMKSTSGYAFTFGSGVFSWSSVKQQCVALSTAEAEYISASEATAQATWLRFVLEDF
GEMQTVATPMNCDNTSAIAITKNPIFHQKTKHINRRYHFIKEALQQGVIELLHCPTKEQIADIFTKALAREQFSYLRELL
GVKSVHNLKG
>Copia-67_SB#LTR/Copia 440-4975 via tfasty with OSCopia2, 3 stopcodons. [Sorghum bicolor]
MAETAAERAAREAQEQRDREAAAARAKALDEYEANYADVHAAAIAVLNIKVLVLVVLDRVANNYTRWRALFLVILGKYAL
TDHVLTDVVNDDRPAWLQMNCTVLTWIYDTINPDLQQSMMLKEPNARVAWIHVEDEFLGQRESRALLLSAEFRTVKQVSS
SIMNFCRCLETMAASLREFGDPVGDRTLVLTLLRGLSKKFRPMVTNIKLRQLFPSFSEARTLLLLEEIDLNDSAGNTGTS
SSSTTPAAGAPTLLAATGSTNTAWRPPAGGPAPPGHNQGGAPTGQGNGNQGGRSGRRRGRNKQQQQAPHGQHQRPPAQYQ
PWAYWAPPPPAPRPMYRPPAVGYMVVQQQQQAPHGYQAAPPGFGAPPGFGAPSGYDYRAPGYHVAPPPPQQQQPWTPMHG
GSFDMSSLASNFSTMTLSPLGTGEWYADSGAGSHMVNNAGILTTSHPPSSSHPSSIIVGDGNLLPVTSVGSHSFSNTGRP
LVLSNVLVSPNIIKNLISVRRFTTDNNCSIEFDPFGLSVKDLQTRSVIARCNSTGDLYPFFMPSSTTAFTAVASSTTLWH
RRLGHIGYEALSTLISSNAIPCNKRHDTHICHACQLGRHVRLPFSMSNSHASHAFDLIHCDLWTSLVVSVSGYKYYLVIL
DDCTHYTWTFPLCLKSDTFGAITHFFSYVRTQFGSSIKAVQCDNGREFDHSSAHMFFLTHGVVLRMSCPYTSQQNGRAER
ILRTINNIVRSILFQASLPPVYWADSLHTATYLLNRHPTKTLDGLTPFFSLYGTQPTYDHLRVFGCACYPNLSSTAPHKL
SPRSTLCVFLGYSTDHKGYRCLDLHTNRIIISRHVTFDETVFPFADMSTSPQDHTTLEFLDADDSSSLDGARAVLAGTRL
PGGMDAAPGGHNDSLATGGLDPTASAPGGHGAPATGGHGSSPAEPATGATGGPASTAPGATAPADGPSQATASGVGRPVG
RTTATVPLQQAPVINAHGMRTRGKDGIRQPIDRLNLHATPLSSVPSSVRTALTDPTWRRAMQDEFDALQANDTWTLVPRP
SCVNLVTGKWVFRHKFKFDGSLDRYKARWVLRGFTQCPGIDYDETFSLVVKPATIRTVLTLALSHSWPIHQLDVxNAFLH
GILNDTVYSVxPAGFVDTSRPDYVCRLNKSLYGLKQAPRAWHHRFASHITSLGFVEAKTDSSLFIYSRDTDVAFLLLYVD
DIVLTASSTSFLQRIIHALRQEFSMTDMGALHHFLSVSVQRQSDSLFLSQRQYILDILDRVGMLSCKPCSTPVDTHSKLS
VDGAVVTDPSSYRSIVGALQYLTFTRPDIAYAVQQVCLYMHDPREPHPGAMKCILRYLQGTLDLGLHLHRTSLVDLTVYT
DADWASCPDMRKSTSGxAVFLGDNLISWSSKRQPTVSRSSAEAEYRAVANGVAEACWLRQLLQELHHPLHHATIVYCDNI
SAVYLSSNPVQHQRTKHIEIDLHFVRERVALGEARVLHVPTMSQYADIFTKGLPTSLFTEFRSSLNVRGAPS
>Copia-64_PT#LTR/Copia 177-4232 via tfasty with Copia-7_GM, 89.0% SW:4824, 1 stopcodon. [Populus trichocarpa]
MTTPDKFFPFFDGHYDWWSMTMENFLRSKELWSLVEEGIPAPAIGTSPASEAQRKTVEEAKLKDMKAKNYLFHAIGREIL
ETILDKGTSKAIWCSMKQKFQGSTKVKRAQLQALRREFELLAMKEGEKVDSFVGRTLTVVNKMKSNDEKIEQSTVVSKIL
RSLTPNFNYVVCSIEESNDLSHLSIDELHGSLLVHEQRMQGQQEEEHVLKVAQEDRYGRGRGRGVFRGGRGRGRGRQPLN
KALIECFKCHKLGHFQDECPNWEKKAYYAELEEKDELLLMSYTELHQTKKEEVWFLDSGCSNHMTGNKKWFSDLEEVVNR
TVKLGNDMRMAVVAKGSIRVKLNGMTQVISDVYYIPELKNNLLSIGQLQEKGLAILIKDGTCKVFHPKRGLIMQTDMSSN
RMFYLSVSIIPGNSLCLQAEDVSEKEAYMWHCRFGHLNHKGLQTLSLNKMVIGLPSLKSSQKICTVCLTGKQHRMSVPKR
SLWRASKQLQLVHSDLCGPIKPASNNGKRYILSFIDDLTRKAxVYFLHEKSETFAIFKSFKACVEKELGAYITCLRTDRG
GEFCSKEFKEFCESQGIRRQLTAAFTPQQNGVVERKNRTIMNAVRSMLIEKKVPKAFWAEAARWCVHIQNRCPTAAVPNK
TPEEAWNGEKPVVDYFRIFGCIAHVHVPDQMRSKLDDKSRKCVFLGVSDESKAWRLYDPVSKKILISKDVVFEEEEEWDW
GRTEEEIKQDTLEWEDEDESDGEDDQNNEENGGTSSDNSDSNLHDGMYEDNSESNTNSLGSSLTESPPNEPNPDTHGELT
EGRSVRGRRAPSWMADYETGEGLFEDDNLNAMMVTENDPVLFEEAVRSKKWREAMSAEIEAIERNQTWELTVLPKGVKPI
GVKWVFKTKLNKNGDVEKFKARLVAKGYAQRHGVDYTEVFAPVARFDTIRMILAMAAQSSWEVFQLDVKSAFLHGELKEE
VFVQQPEGFTKKGEEEKVYRLRKALYGLKQAPRAWYNRIEAYFTREVFEKCPSEHTLFTKSKEGKILLVSLYVDDLIFTG
NDKSMFDEFKKSMMLEFDMSDLGKMKHFLGVEVKQCADGIFICQKRYAREVLARFDMESANAVKNPIVPGTRLSKNEGGV
RVDETLFKQVVGSLMYLTVTRPDLMYSVSLISRFMSSPTMSHWLTAKRILRYLKGTTDFGILYKKGESRLSLMAFTDSDY
ADDLDDRRSTSGFVFMMGSGAVSWSSKKQTVVALSTTKAEYIAAALCACQCVWLRRVTEKLGIEEKSGTVIMCDNSSTIH
LSKNPVFHGKSKHINVKFHFLRDLVNEGIVELSYCNSQNQIADIMTKPIKLEQFEKLRGMLGVTEVSLVQTH
>Copia-62_BRa#LTR/Copia 125-4183  [Brassica rapa]
MAAANFDTERAFGVTNIKSHIPLILDLDDHNYDAWRELFLMHCVAFDVVGHVDGSATPQSNDDAVWNKRDGLVKLWIYGT
LAPQLFRSAFETGGTARDIWVRIENKFRNNKEARAIQLDNELRTTEIGDMSIEDYSQKLKSLSDRLANVAAPIADRTLVT
FLLNGLNEKFDNIINVIQHRDPFPSFETAKSMLLMEETRLKRFNKAVAKHKDHSSSDTALTVATPPQNNDRQQHQKFNNY
RGNRKNGGNRSRGRNNNRYNNWNNQFWPPQYQQQQYPPWQQQLPPWNQFMYQQQLNRGLLGSRPSNVNQANMAITEVQPT
TDFAQAFNTMTLGDPGAADWYMDSGATSHLAASSGILNSDFRTSVNQSVVVGNGSTIPVLFSGSSSIPSSSRNFSLKNVL
VTPQIVKNLISVRKFTTDNWCSVEFDPFGFSVKDLQTRRLLLRSNSKGDLYPLPGSPNLQSSPPVAFLASHGLWHKRLAH
TNNASLSSVLSSNSILCNKDSQTPCMACHLGKSIKLPFVSSTSTTSAPFEIIHSDIWTSPVPSLSGIRYYVLFLDDNTHF
LWVYPLRKKHETFSKFLHFNAYVKTQFKTKIKALQCDNGGEYNNAQFQTFFDSEGIQFRFSCPHTSQQNGKSERMIRTVN
NSIRTLLFQAKLSSSYWVEALHVAVHCLNILPSSSIQNEVPYKKLFQKTPKYNHLKVFGCLCFPNINHSNLPKLSKRSVP
CLFLGYASQHSGYRCLDLKSNKIILSRHVLFHETIFPKANKSSSSETYHFLNVEEETSPLFKSILTSPITPQPTVLPLPS
PATQPIPPPVAHPMTTRSKAGIRKTKTHISLLASVSPLPTGYKQALNDPNWTPAMTDEIDAFTETRTWDLVLRPKNTNIV
SCMWLYKHKLNADGTPRRHRARLVANGKSQMEGIDYNETFSPVVKPATIRTVLDISLSRNWPIHQLDVKNAFLHGELDET
IYMHQPPGFHDKNFPDHVCRLRKAIYGLKQAPRAWNSRFAAFVVQMGFHSSKSDASLFIFRRGQQQAYLLLYVDDIILTA
SDEKFLAKIIATLKTEFPMSDSGKLSYFLGVKVDHTKDGLFMSQRAYAEDIIKRAGMEDCKPCQTPVDVNSKLSSDDGDP
VPDPTHYRSLAGALQYLTFTRPDIAYGVNQICLFMHAPKQPHMQALRRIIRYVQGTKDHGLKLMKGQISQLVAYSDADWA
GCPDTRRSTSGYCVYLGPNLVSWSSKRQPTVSRSSSEAEYKGVANVVSELCWIRNLLLELGCPITKASIVYCDNISSVYL
AQNPVKHQRTKHVELDIHFVREKVALGEVKVLHVPTSLQFADIFTKGLPRILFNDFKSSLNVCSPDVFTEGGY
>Copia-61_GM#LTR/Copia 1096-5160  [Glycine max]
MSSLSLRGILESGKLVGANYDDWYRNLRIVLMHEKLIDTIDKPPMEAPDLSDAEATKVFQKYLDECLTAKCIILASMSSE
LQRQHQDMDPYEIVEHLKKMYGGQSRTARFQLSKALFRSSLAANEKVGPHVLKMIDLIEQLEKLGCTLGKELSQDLILQS
LSDSFSQFIVNFNMNKMSCDLHEMLNLLIDYENQIASEKKKGTVMVVGKSSKKKGKVPKRKHLGPKGGMTKPKNKRNKID
QTDAECFFCKEKGHWKRNCKKYLDSLKNKKQGKTLMKNVFMISLTVTDSSMWVLDTGSSFNICNTLQGLQITRWLKKGEI
NLQVGNGANVAALALGSVSLIMPTGKVLVLEDCYYVPKFVSNIISISMLDKRGFRIIFNNNICSIYHDDDLYVNGYLQRG
IYVLLDVNHNSIMHVSSSFKRKRDNQVNKTYLWHCRLGHIGEKRINKLHKEGYLDNYDYESYETCESCLKGKMTKSPFIG
SGERASELLGLIHTDVCGPMKIQAKGGYSYFITFTDDMSRYGFLYLMKHKSESFEMFKRFRSEVEKQTGKSIKMLRSDRG
GEYLSDNFIDYLKENEILSQWTPPGTPQHNGVSERRNRTLLDMVRSMMGFTDLPLNLWGYALEAAAYLLNKVPTKAVSTT
PYEIWKGKKPSLKHIKVWGCPAYVKRLQTDKLEARSDKCRFIGYPKETMGYYFYQPSNHKVFVARGATFLEREFLVEGNH
GKEIELDETQVTNDNITQEHEMETERPFFDVLKLGQSSSTQTIMAQEPAIVQEQVVVQEEVNEPILEQLQQPLNPTQEPL
RRSTRMHRAPDKLNLMVQDDMSNEVYHNDDDPKSYEEAMRSSDCNKWQKAMESEIESMKINKVWTLVEASKDIKPIGCKW
VYKKKIGADGKVETYKARLVAKGYRQQEGIDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTTFLNGELKEEVYMT
QPEGFTSLAGRNEVCKLQRSIYGLKQASRSWNIHFNKTIEKFEFVKCEEEPCVYKKVSGSAIIFLVLYVDDILLIGNDIP
TLQGTKIWLSEQFSMKDLGEAVYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMDNSKRGYLPVGVGITLSRENCPTTP
EERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGDSELKLKGYTD
ASFASDKDDSKSISGYVFTLNGGAVSWKSSKQATVADSTTEAEYIAASEAAKEAVWMKKFIFELGVVPSIEESVPLLCDN
NGAIAQAKEPRSHQKSKHILRRYHLIREIIERGDVKIEKVDGKENAADPFTKALGIKEFDKHKWELGMKFMNDWL
>Copia-62_MLP#LTR/Copia 219-4715 63.7% sim to SC-10, SW:1442, [Melampsora larici-populina]
MNEEDNLPSDQLLNTQSPSNSSSSSALPNDEAYQSASEIGSVGEETFLLESLFPDMTSSIPPTTTITTTTPSNLFGGKDH
QIAASVVNTLSKIVISDILNDTNYLTWSTDIRNGIKSLRFHPFLLSDKDENGIDEDIRLYNEVVRECLMTWMISKMDQTN
KNRFEPMMTVKTELGPDVSPTPSALWVKIRDHHSPRTSAHQMLLCRSLFNLIQGESSLPLHMDEFHKAYIAYMNSGGKIG
SVELGQQLLMSLNADWMKVAEDIADSDTFEYHSVVTALKVRIANRAMLRPQRTTVIEASAASPMRRRQNFVQTRCSPAKC
VSMSHTSADCLRNPKNIDKYNAWVEAKKAKGEWIDRPPKPNSKQISSTSPSTSLITTDSAVPSLSSLQEALERSEFQASA
SAVFIVDPDANIDNDHFGIVDSGTTHHMFKSQKFFDLNHFKLLDTSNERVGLAGGTSTLKIKGQGNVTIMGPTGDLTTLT
DCLFVPTLKQNLIAGGRLLHDRWITTLKDNSSFIIERHGKIALTGRVHPTSMLLQLNAVRTSPSSSAITDTTTESLQLLH
HKLGHPNFTYLKQMIRGEAVLGLPLSLSKVVLPLELPCNSCDLSKAHRQPHSYTRTRSLHLLDNVHIDLSGIMRTPAICK
SLYFILFTDDHSSYHHITGLKSKEKDEVHGAIHTYLSLVERQCDRKIKSLTLDGGGEFLNNVLLPYCRSEGIYLRITAAY
TPEENGVAERSMRTIVSKARSMLIQANLPIRLWLEAAKNAVFVNNRTTTTTLPKNKTPYEIWYGQKPDVSHVKAFGCLTY
VLIRKPDCINKYAATSEHGVLVGHTEHNRNYKVFMLKDAKINITHDATFREDVYPFTQLPKFDISHLTTEDEAVNIPPLA
INPAPPPPDDDDPVQHVVTVQEQATPEPPVDIPPLPSSPPQQMPRRSEREIRPVDRFVPNSSMTFWETDCFIEQGDICAY
AFAAGPTVRLVAEPGSYKQAMKHPNAHNWKNACDKEIDNMNHKGVWKLVARPLDAPVVGSRWHFKVKLNPDGSIIKYKAR
IVAKGFTQTFGVDYNQTYAPTGKPASYRIIICIASCNGWSVHGMDAIAAFLNSALKELVYMEQPEGYVNEGDEGKVCLLL
QAIYGLKQSAHEWNEEFKLKLIKAGFTQAEGDECVYIRRRSTSEVVIFYLHVDDMAITGPLECIISFKKEIMTFWEMDDL
GEVSCVVGIETLRLSSHHYAIHQRSMTESLLLRFGLSDCKPASTPVQGGQKLLKSTVEESTAFAKLNYPYRSGVGSLMYI
SQCTRPDIAYAVGVLSQHLDNPCQRHWDAFRHVLRYLRGTINLGIHYHVEDNRLFQMKSSWNVPSTNVDSDWAGCKNSRR
STTGYLTTLCGGAISWRSRLQQTVALSSTEAEYRATTEAGQEVLWLRNLLRDVGFEWSGPVNLNCDNLGAIDLSSNAVHH
GRTKHIDIEHHWIREQVQKDNITLSYCKSEDMTADLLTKPLHPGPFWNHMKGVGLKRCA
>Copia-63_Mad#LTR/Copia 484-5042 via tfasty with Copia-22_Mad, 1 frameshift. [Malus x domestica]
MSDKSVRIESLLGMLTVKLQDDNFVKWNYQFQSVLRGYDFFEFFTGESPCPPKFVINTESGVTTEITAAYKSWVQKDMAL
LSLLIATLSDDAMEYVIGCKTSHEAWVNLQDRYASVSRARINQLKIEFHTIQKGSDSIDKYLLRLKAIRDQLVSAGERIT
DNDVVITALSGLPSEFDIVKAVVLARETSIPLKDFRAQLIGVESAMEARVTTLASGMAAMYVQGDRVTGGHQNSGYSQGE
SSNAGSRTGDTQGYQGNNRFQNRNGYNNSQGSNTSQNYNRSGYGSFNNSRPYYNGNRQRWGNNYNSSSTGNRSSWSGNTT
FKTGPIVECQICSRRGHTAATCSNRSDGYQVLICQICGKKGHHALDCRHRNNYSYQGAPPPPSLTAFSAQAPSHMTAAEY
GQNVQHFSAADTWVLDTGASHHMTSNLGNLNQPVQYNGDEKITIGNGEGLTVNHIGSTTLSTPQHLLFLKNVLHVPTITV
NLLSVKKLCEDNHCWFICDESVFFIQDKATGMMLYHGKSRGELYEIPVTVFSRRLVAGQNKAVALLGKAVKTSVWHKRLG
HPSAEVLDVMLRNVGQPVSVDSSPSVCSSCLSGKMCRQPFPVKETRASSMFEKVHSDIWGPAPVKSLEGFRYYVSFVDEF
SRFVWIFPIINKSDVFQVFVKFFAFVTTQFNSVIKCLQTDGGSEYMSNRFQSFLALKGTAHSISCPYTPQQNGLAERKHR
HIVETAITLLTEAEVPLQFWNYACNHAAFLINRMPCKVLGMKSPYQLLFKQDPVLHTLKIFGSAVYPFLRPYTKHKLQPR
SKQCVFLGFVAGYKGVVCYDLSSTKLVLSRHVVHDETTFPFKPRLQLSSGKFNKVQSTTMSPIIVQIPCFAPDPTASPTH
AESYANPEIVEDRPMDSLQVPSSSSQVSQDLNAHTHSSPTLSTSTPSTISLLPVHSPSQLEVILPISSPVVETNEESAHN
MVTRLKSGAISRRSYTGYIGSFPELQTLQMDDECDFTGGFSFIAAIKDSEEPSTFRKASTSPHWQSAMQEEFNALKAQGT
WQLVPSPPNRTIIGSKWVYKVKKNPDGSVSRYKARLVAQGFSQEQGIDYSETFSPVVRHTTVRLILSLAAINKWELRQLD
IKNAFLHGDLQEEVYMKQPQGFVDQTKPHYVCKLIKSLYGLKQAPRAWNSKFTTYLPALGFVASSSDTSLFVKNDDKDVV
VLLLYVDDIILTGSNASKVQQVIEDLAGVFDLKDMGRLTYFLGLQIHYKENGDIFVNQSKYVKDLIHKAGMESCKPANTP
CKPHNQMLLNEGIPLQDSTLYRSLVGSLQYLTFTRPDIAYAVNSVCQFMTAPTDVHLTSVKRIIRYLQGTAECGITYAAD
TDIHLTAFSDADWAADLNTRRSVTGYVVYLGGNPISWQSKKQSSVSRSSTEAEYKALAHTAADVAWIRLILKDLGVALPV
QPTIFCDNKSAIALSANPVYHSRIKHLDTDYHFVRERVHHGDLLVEYLPTDEQTADILTKGLHSPPFTRHCFNLKLGFPS
>Copia-63_BRa#LTR/Copia 140-4546 via tfasty with ATCopia62, 84.6% SW:4956, 2 stopcodons. [Brassica rapa]
MVTLRRSTRRAARPSTARQSVPTTTATSPVQANGIPIPPIPVQTSANPTAPTFPVPNPSHDFGGIQYSPYFLTNGDNPGT
SLISEVLDGSNYNTWSIAMNIALDAKNKITFVDGSLARPLESDPHFRIWSRCNSMVKSWILNSVTKQIYGSILRFNDASE
IxKDLLTRFHITNLPRSYQLTQQIWSLQQGSLDLSTYYTKLKTMWDDLDGADCVKTCQNCNCCRSMTTKSEHTKVIKFLA
GLNDSYSNARSQIIMKKTVPDLSEVYNLLDQDFSQRSINPISNASAFHVDGSDSVASINAAYTPRPQRPICSHCGYNGHT
IDKCYKIHGYPPGFKHKKPQSDKGGYVEKQSKPVVAQVAVNDQTVTAESTTTMSKDQIQGLIAYFNSQLKNDQTIMASTS
GGSITPLHGMTLSSSTIGFIGMLRATGNVLSSRSWIIDSGATHHVSHDKSLFVSLTASMDRSVSLPTGTDIKIAGIGQIR
LNDYLILNNVLYIPDFRLNLLSISQLTHDLGCRVSFDEDSCMIQDTTKGLMIGQGERISNLYVLEGESLNASGTVPAKSS
INIVVDTSLWHNRLGHPSVDKVHSITDVLGYSQRNNGKFHCPICPLAKQKHLPYMSPNNMCSNAFDLLHIDIWGPFSVPT
AEGYKYFLTIVDDHTRVTWLYLLRTKSEVLTVFPEFLTMIENQYNAHVKGVRSDNAPELSFTALYKSKGIKAYHSCPETP
EQNSVVERKHQHILNVARALMFQAHIPLEYWSDCVLTAVFLINRLPSPLLKNKSPFxMLTNSKPAYKDLRVFGCLVYCST
STKHRHKFQPRARPCVLLGYPAGYKGYKLLDLESNTIHISRNVVFHEDIFPFQDSSMASPDFMSLFGSAATSNEEIPVDM
TSSPTVVEISSTTPSAAKAVKPTRVSKQPAYLHDYYCNMTETDIPYPLASYLSLKKLSKGYKSYICAIALHPEPTSFTQA
KKFDEWLKAMNEELIALENTQTWEICSLPPGKHAIGCKWVYKVKLNADGTLERYKARLVAKGYTQQEGIDFVDTFSPVAK
MTTVKTLLSVAAAKNWSLTQLDISNAFLNEELHEEIYMHLPPGYTAKEGTILPENAVCKLKKSLYGLKQASRQWFLKFST
TLLALGFQQSHSDHTLFIRRDDAKYLAVLVYVDDIIIASNNDDDVVQLKTDMKSFFKLRDLGPLRYFLGLEIARSSSGIF
VSQRKYTLELLEDSGLLACKPCSIPMDPCVKLRVDSPDDLLEEPLIFRRLVGKMMYLTITRPDITFAVNKLCQFASAPRK
SHYQAALRVLHYLKGTVGMGVFYSSTCDFVLKAFTDADWGSCLDSRRSTSGYCMFLGNSLISWKSKKQDTVSHSSAESEY
RAMGCAVREIQWLVNLLTDFQVFQSQPVAFFCDSTAAIHIANNAVFHERTKHLEFDCHKVRELILKGLIKTLHVRTDNQL
ADVFTKPLQPGHFHSIIGKMALNSVFSPS
>Copia-69_BRa#LTR/Copia 105-4202  [Brassica rapa]
MAAHPPTLLDRAYGVNNIKSHIPIILDNNDHNYDAWRELLLTHCQSFEVAGHLDGTLLPTDDNDQLWIKRDGLVKLWLYG
TISKDLFRSVFKTGGTSREIWTRIENYFRDNKEARAIRLDHELRNKTIGDLTIHAYRQDLKSISELLANVESPVSERTLV
TYMINGLSAKFDNIINVIMHRQPFPTFEQARSMLILEEERLNKGDKSPLVKDSPSSDKVLNVSATSQPPATTQQPQQQQR
FYNNRGSKRNNRGRGRNYNNNQRPMYNQWGVPFWPNAYSFWGNQQQAPWGQQQFNNQGILGPRPSQQAHQVQTQGQFPSA
APFVPTTDFASAFNTMTLTDPTDHQWYMDSGATAHLTNNPGNLKSILNTGTKQTVKVANGDIIPITKTGCFSFSSYSRPL
HLSSVLITPSIIKNLVSVRKFTRDNSCSIEFDPFGFSVKDLRTQRTILRSDSTGDLYPLFPATNKLSSGHSAFLSTSSNT
WHRRLAHLSNQTLSSLLSSKLLLCNKHDLSNDCDACQLGKQIKLPFSSSESSVTAPFEIVHSDLWTSPVQSLGGIKYYIL
FLDQYSHFLWVYPLRSKAEVFSKFQLFFNYVETHFKTKVRSLQCDNGTEYNNSMFHNFFAQQEITFRFSCPYTSQQNGRS
ERMIRTINNSVRTLLFQANLPSSFWVEALHATVHTLNLLPSKSIKNQVPYSVLFKKPVSYSHLRVFGCLCYPNQNHANSP
KLSPRSSKCILLGYPNFHRGYRCFDLESKKIIISRHVTFDESNFPYNDSIRQKESTYDFLNDDTDDSPFLQSIRTSPPVI
ATPQAVASSSNQSTQTVPAVTEAPRHSMTTRSRHGIHKPKHVISLLTETKSPLPKSYKQALNDPNWTPSMTCEYDAIIKS
GTYDLVPRPKNTNIIRCLWLYKHKYDAQGNFKCHKSRLVANGKSQEEGIDYTETFSPVVKPATIRSVLHVALAHNWPVQQ
LDVQNAFLHGNLDETVYMFQPPGFVDETKPDYVCKLNRSIYGLKQAPRAWNARFVNFITTHGFTQSKSDASLFVYRKGTD
LAYLLLYVDDNILTSSSPALTTNIIAAMKKEFPMTGGGLINSFLGIAAIHNDKGLFLNQTKYAEEILIRAGMQDCKPVST
PVDLKSKLAEAVGKPVDDPTLYRSLAGALQYLTFTRPDIAYAVQQICLFMHDPRDLHLQALRRILRYIQGTKDKGLQLLK
NQKLTLTAYSDADWAGCPSTRRSTSGFCVFLGDNLLSWSAKRQPTVSRSSAEAEYKGVANAVAETCWLRNLLLEMHCPLT
RATIVYCDNISAVYLSSNPVQHQRTKHIEIDIHFVREKVQMGHVKVFHIPASSQYADIFTKGLPTSLFTSFRSSLGVSQL
DAQTEG
>Copia-73_ZM#LTR/Copia 1034-5889 via tfasty with Copia-12_SB, 78.5% SW:4715, 1 frameshift and 2 stopcodons. [Zea mays]
MTGIVSREFEVLAPHGQNYLTWASDVQIVLGGKKLKVAIGLGQKDEVATDEQNDQALHFLRHHLSPTLKNEYMSERKASN
LWNALQQRFERLKYTVLPQAQQDWARLRYADFKTVGEYNAALHRICTKLSLCGKVITDEEKIEKTLSTFHPSAIQSARNY
RQDAYKQYSDLIDMMQVNEAQDDALKTNFNAYPNGKGISTEVNVASYKIRKPIQRKRGKHGAGKGKKETTVNPINAHGKK
TSKEKPQHKPYGLQDQTCYKCGVWGHWSKICQSPKHVIEAYKAKNISKQKPEAHFTMATNNEAMEEDPTLEASGMPLDLA
GAVKMIATEENTSIALVEADTDAFLDSIxVLACTFIFQSLKKNIIMVCKLYKSIIFISxMLNYLNLLCNISLMIITNCNN
CIDERSMEDICIVDSGTTNTILRETKYFHTIMKNVGSITTIAGSDSCVIGSGKATITLPMGTQIEIKEALLYPESTRTLL
SFRDIRANGFHVETTEENGKEYLYIIKYGEYDKEVIEKFPSLESGLYYTKISAPAVYTSLKTVFRHSELFSLWHCRLGHP
GLRMMRNIINNSQGHCINVKHFPNQEDFVCQGCAMGKLIVRPSPLKVKNEIPAFLERIQGDICGPIQPLSGPFRYFMVLI
DASSKWSHVCLLSTRNHAFAKLISQIIRIKNTFPDHRIKSIRMDNAGEFTSKAFDDYCTASGIAVEHSVPHVHTQNGLAE
ALIKRIKLIARPLLQSCNLPNTCWGHAILHAAALINFRPSAYNIHSPMQLVQGVIPKISHLRKFGCMVYVPIPPPQRSAM
GPLRKIGIYVGYESASIIRHLDPMTGELHTARFADCIFDEDNFPSLGGGKEPLDEKCREIIWQSMGIPAHDPRTKEANLE
VQKIIDLQNLANELPDHFCDLKSVVKSHVPARNAPERVEIPKKIEGIPDPVKRPHNKRTGTLASQTPSTRRRPKKRGQED
LPQPITEMPQSKKGSQTRPGTGKEHMKKRIPDLNLPVEETANPNMCAHKGDEKLKELAPATRSNRETQEEMQEASHDEMA
INYVLTGECMNRATANIDIYFAKKVASIIDHDPEPASIAECKKRPDWDKWKKAITAELISLDKREVFGPVSRTPSHIHPI
GYKWVFVRKRNENNEISRYKARLVAQGFTQRPGVDYEETYSPVMGGITFRYLISLAVNLNLKMKLMDVVTAYLYGNLDTD
IYLKIPEGIPVPNRDEKNRALYSVKLKKSLYGLKQSGRMWYNRLSDFLSKKGYINNEDCPCVFIQRSPNGFCIISAYVDD
LNIIGTHKEIEEASSYLKSEFEMKDLGKTKFCLGLQLEHFEGGILIHQSTYTQKVLERFGLEKAYPAKTPMIGRSLQVDQ
DPYRPREEGEEVLGAEYPYLSAIGALMYLANSTRPDIAFAVNLLARYSAEPTKRHWKGIKDIFRYLQGSKDLGLFYRKNQ
DLNLIGYADAGYLSDPHSGKSQTGYVFLCGGTAISWKSSKQTLVSTSTNHSEIIALYEASRECAWLRRMINHIQSACGLN
IEQTPTIIYEDIAACVAQVQMGYVKSNLTKHINPKFFYAHELHKMNEIKILHSKSCENLADMFTKSLPASSFERCVRGLG
MMRLRELQISGGETSHTPK
>Copia-73_VV#LTR/Copia 90-4535 via tfasty with Copia23-PTR, 84.1% SW:5072, 3 frameshifts and 1 stopcodon. [Vitis vinifera]
METPPTGVEKHEGENSILADLTTRMTQVLNHNQTQNQITSHEPATQIGIKLDGTNYALWSQIVEMYISGKDKLGYINGDL
PQPLQTDPAFRKWRTENAVVKGWLINSMDPKLVSNFIRFSTAKAVWDNIAITYFDGTDTSQVYDLKRRVTRLKQEGGSIE
TYYNNLQGLWREIDFRRPNPMECDIDIQKYNSILQEDRVYTFLDGLDDRLDKIRADVLQIQPFPTVEQAYAQVxREDLRQ
SVMMMNEDTISGGAMLSRGGHKPQHQLSFQTPSNGKPNTTTKPKSQGEGGGCTHCGNTKHTKETCFKLHGYPDWWHELKA
KKKREASGGDNLGRAALMSVEPQLSLIPQQESSISTSEQIAQNDSGNRGYVFSCSKMGNHDGWIIDSGATDHMTFDPCDF
SKATQPKRICIANANGVTYPVTGAGTVALSPSFSLPNTLLVPSLSNKLLSIGQVTEELNCCALMYPNFCLFQDILTKEII
GRGTKREGLYYMDDFSYGRANNMHSAGVKERQIWLWHNQLGHPSFRYLRCLFLDLFTKFNDSDFKCEACIQAKSHRVPYS
ISLNKCDTPFFIVHSDVWGPAPITISSGVRWFVTFVDDCTRMTWLYVMKNKHEVFEIFRSFHNMIRTQFSAKLQILRSDN
GGEYDNAQFHRYFQEHGLHHEASCSQTPQQNGVAERKNRHILEITRALLTAAYVPKRFWPDAVMTAVYLMNRLPSRVLHY
KTPLQVLAQHVTLPSVLMLPPRKFGCVTYVHIHKNQRTKLDPCVVRCVFLGYAAHKKGYRCYDPTTRRLYTTMDVTFIES
ENFFTSQSSRSSLQGEMTSEEQNWENWPGFEETSNDIREVQPREPMAILIDQRGEVENVEHVEAEIEQQPTRVDQNGEVT
EIESEQPFHDLTVPQSDQSPENIPEVQVLNSPHNIFVGYKLPFRHNRGQPPNRYSPDHGTSKSKYPIANHISTQKLSEPL
KALVHKLSADGVPDTVSEAMNNPKWIQAIEEEMKALQKNDTWALVPLPEGKKTVGCRWVFSIKHKADGSVERYKARLVAK
GYTQTYGVDYQETFSPVAKLNTVRVLISLAANLDWPLHQFDVKNAFLHGDLEEEVYMDIPPGFVSSTQGKVVCKLQKALY
GLKQSPRAWFGRFSLAMRKHGFKQSNSDHTLFLKHQRGKVTALIIYVDDMIITGNDEEEISKLQEHLATEFEMKNLGGLK
YFLGIEVARSKRGIFLSQMKYVLDLLSETGMLDCRPADTPIVQNHGLGEFPNQTPTNKERYQRLVGKLIYLSHTQPDIAY
AVSLVSQFMHCPSEDHMSAVVRILRYLKSSPGRGLMFTKNQHLHIDGYTDADWAGNITDRKSTSGYFTFVGGNLVTWRSK
KQKVVALSSAEVEFRGMAKGLCELLWLKRLLEEIECSSQDTMNLFCDNKAAIAIAHNPVQHDRTKHVEVDRHFIKQKLED
KVIQFPFVKSEDQLADILTKVVSSRIFHNSLDKLGIDDIYAPT
>Copia-76_MLP#LTR/Copia 125-4738 via tfasty with Copia-6_SMo, 63.7% SW:1506, 3 stopcodons. [Melampsora larici-populina]
MSSPDPSLIDSEDNDTFSDSVSEAASDTRTEKPDHLSSSLQTVTTMADKDESKVFGTPLQQFVQKLNSAIAKYDVDTKLT
DGNFPQWSLEIRQVLKVLDYDKYLIKTDFKYPGLSDDQHLKVKLVVSIWMMGKMDSFNKTRCQTMLKLRACKDVDDDEED
VGEDSDEDDDIAYEPALIWSHLKNHHQKISEAGLQTIEDAINEMKILPGDSFKTHCDKFNNLIADYVKYRGKISSSRAAR
KLIKTVKSRITDSVSENIYAHVSPLTREGVVQYLIDYEARNGGFTTPALIEASQASYSTAAAHSGGGSYRDRRNRPKCSE
NNCISTTHTADKCFAKPHNRAARDKWIAQMEAKRNGTQSYKSQTPAQNPNVSGLRQLTLPTANMSIASDNPFASLHVYLD
DTNLEDITASVSVNSLFESSHTVFDEESPAANVVSESGGQWALYDTGASHHMFKSNTLFSEDSLSKVDDSSKRLKLAGGE
VSLAVHSTGTVKLKSGSGKXFELNNSLFVPDLSQNLLAGGAMLRKGVQIMIHPNDVNCFSLVLKGEALFNGVFASNNLMY
VALEPVSLNPDSTALATSTEDLTRLHHRRLGHLNCRYLKTMGVNESVEGLAEEITQLDFCDTCSLSKNHKIPHSSTRPRA
SRHLENVHVDLSGIIRTKGLKNEMYYALFCDDYSSYRHIYFMKSKTKEEVYDVFMSYLALAERQTCKMLKQFTLDRGGEF
LNDLLGVEFKKRGITLHLTAAHSPEENGVSERGNRTISTKARSIMLESGTPLRFWVQACNTAVFLTNRTITAALDNNRTP
FEAWHFRKPSVEHLRVFGCLSFSLIRKELRGSKFGAVSSRGVLMGFEEDNFNYHIYDLASQKLLITHHATFNENSFPFRE
SISNIPHSSPVVSSDSTVNARFFDNDSEEEQDEITDLPPSVAPTTVTPSSRDQAENSNPIIAPVGENESIQTTTVRRSDR
KKNPVKYTAVAVCDTLIDSFITAAWESALRFDLGIPFGNMIAISDDSPKSYSKAVSGPEGDSWLKACRKEIQAMHDKKVW
KLVERPSNTNVIRGLWLFRKKPTSDPSNPVKFKARFVAMGNTQVEGEDYFETFAPTGKPSSLRILLALAAIFGWEVHQMD
AVTAFLNCDLFETIYVEQPEGFRQPGEESKVCLLLKSLYGLKQAPKYWQDDVEEFLISVGFAQCEVDHCIYIRRREESFT
VVYVHVDDLAITGNDIFTFKTEISTRWEMEDLGIASTVVGIEIKREAQFTYSICQAKYAHKILERFESTEVKPASTPFPS
SLKLYKPDLEEIEDFKSRNLPYRSVVGSLMYLSQRTRPDLAHAVGTLSQHLDWPGFQHWDAARHVLRYLKGTVNVGIVYS
RDSYATILKGLKSELCPQALCDADWAGDKDTRRSTTGYVFMLANGPISWKSRLQPTVALSSTEAEYRAITEAGQELVWLR
TMMSKLGYEDPNPTVLESDNKGAIHLTNKTVFHGRTKHIEIHYHWIREVVKSGKISLQHCPTHLMIADLLTKPLGSAQFI
KLRKLLGIRNIAxxTxGG
>Copia-77_PT#LTR/Copia 34-4350  [Populus trichocarpa]
MAEENFLSNAQSNTTQINLDALSPYILHASDNPGTALVTCLLKEENYPIWRRAMTNALQAKSKFGFVDGSITRPSSGSKE
ESAWIKCNSMVLSWIFNSLHPTLHDSVAFFMTAEELWKDLEERFSQGNASRIHQLKTEMMNTLQRGMTVSAYYTKLKGIW
DELSTYSQIPPCTCGSAKALAAEREKEKVHQFLMGLNDKYKTVRSQILNTDPLPSLSRVYAQVAQEEQQQLIVETRLPSV
DAAAFLTNSFSKFNNNRKFTSNRDLSKLFCDHCKRMKHTKKTCFELHGYPEWWDKGKKSLKPKTANNTQHMEKTEGNNTV
PITGLTNEQYAQLISMLNLDKSHTSTANFVGTANFAGNAIFLPGNEDEWILDSGASDHMTFQEKFISSHTTIPHFMPIKI
PDGSFVPAKSLGDVSLTPLITLKDVLHIPSFSCNLISISKLTKALNCVAHFFPSFCVLQDLPTRKLIGMGELRDGLYYFR
ALKIPVAATSITSNLHITLWHQRLGHLSFDRLSLLKDLGPFSFKSFNKCCDSCHRAKQARSSFPVSAIKTHEPFELIHCD
VWGPYQTPSLSGAHYFLSIVDDYSRTTWVYLMQAKSEVYTRLVFFMAMIVRQFGKTVKTIRSDNGTEFTNHKLHLYCQQH
GIVTQFSCVSTPQQNGVVERKHRHILDVARALRFQANLPIKFWGECILTAVYLINYTPTPLLSGQSPYEFLFSRKPNYSH
LRVFGCLCYASVLPRSKDKFSERATTCLFIGYPYGHKGYKVYDLHTHKSFISRDVVFYEHIFPYNHQHLPSHSSSSQSTN
VPIPLPVPDHDSIEPIPNTTTEHIEPPSPHTDHTIPTDLDIPALPTDTPATSTTIQPPIPPTTRPSRITKLPSRFHDFRV
ELPKLYTSQFTSSNHASSGTSYPLSHFLSYSNFTTSHASFLAAITQHDEPKFYTQAIKDVHWRGAMQQELKALEQNHTWT
LEPLPPGKKPIGSKWVYKIKYHSDGTIERYKARLVAKGYTQIDGLDYTETFAPVAKLTTVRTLLAVAVAKSWELHQLDVH
NAFLHGDFDEEVYMTPPPGYLSSADNRVCRLRKSLYGLKQASRQWFAKFSNAILQFGFTQSKADTSLFTHSQGTSFTALL
VYVDDVIIASNNSAHTKALKDYLDAWFHIKDLGPLKYFLGLEVARSPDGIVLSQRKYALDILHEAGLLGSKPFTFPMEQN
HKLALDDSAILDNPGAYRRLVGRLIYLTITRPDICYSVHILSQFMHQPHHGHWAAAIRVLRYLKSAPGQGIFLPSKSDLQ
LHAYCDSDWAGCPVTRRSLTGYFITLGCSPISWKTKKQTTVSRSSAEAEYRSMATTACEIIWLRTLLHDLMVPISSSAQL
YCDNRAAIHIAANPVHHERTKHIEIDCHFIRDCIKSGSIATAHISSKLQLADLFTKALGSHQFSFLVGKLGIRNLHAPT
>Copia-76_SB#LTR/Copia 562-5079 via tfasty with Copia-8_SB, 1 stopcodon. [Sorghum bicolor]
MGENQGIEQVLGKLVELLTAKKDEAPSSSKEIMVHTEPVQKIELMPNDIRLEGTKNYLAWSRRALRLLKAKKLESFINGG
SPEPEKKSSPEWNTWDATNCLVAAWMLNSVTPAIASTVETITSAADIWKSLEKMYSGTGNVMLMVETEDRLHDLKQGERS
VTDYVAELKGLCADADYLKPIELPHSECVAWVKKWIEEKRVIQFLRGLNPEFEARCSTMFHQPNLPTLEDAIAAITREES
RLNVMKGNCSSPSRPIFATTGVKEDRRCFNCGDYGHFIRDCPKPLKPNSGRGRGSSRGALRGGRGRGGRGGYRANAVGTQ
GEFFKESEASSVDHLVKESAASSMDHQVKRKCGNSEDQDQEVHSGDFINFAYIDEGNYVHASIPKQISKLNWILDSGASK
HVTGTSSEFVSYMQYPPTRKETIQTADGTSQPIRGVGTVQCTPYIKLSSVLHVPAFPVNLVSLSALIDQLDCRIILDKEN
CLIQKRQTGRNLGSATRHSGLWYMDREGTSDALCTVLAATMGEKESMVMLLHCRMGHPSFDKMYKVFPNVMCGVDKNKLF
CDACEFAKHTRTSYVSRGIRNMSPFVLIHSDVWTCPVVSISGMKYFVTFIDCFSRMTWVYLMKHKDEVLKCFQDFCALVK
TQFNTQVQTIRTDNGTEYVNKEFSAFLSANGILHQTTCPDTPPQNGVAERKNRHILEVARSLMFTMNVPKFLWSEAVLTA
TYLINRTPSRVLGMKTPCEMLLGENKLVVPPKVFGCTCFVRDHRPSVGKLDPRAIKCIFVGYSSGQKGYKCWSPSERRLF
VSMDVTFRESVPFYGEKTDLSFMLEFDLAESDKVNRQGEKNDVIHIPAMQNLRRMEAVISGSSPRIAVETSDLNSTPCGE
DNSKVDDPRYKGPLKVYTRRKYKSQEEVPTTIAPTAHEHSSSTPQEIVDVSSTSEAEVEDSILEDLPIALRKGARAKASV
PPPMYGFEHDIGNYVSYASLSPAYRAFVASLQSIMIPKDWKEANQDPKWREAMLEELRALEKNKTWDLVKLPIGKKAVSC
KWVFTVKQNPEGKVERYKARLVARGYSQTYGIDYDETFAPVAKMSTIRTLISCAANFGWPLHQLDVKNAFLHGDLQEEVY
MEIPPGFSKYYTTGKVCRLKKSLYGLKQSPRAWFDRFRRVLCGMGYKQCNGDHTVFYRHFGRQIVVLAVYVDDIIITGDN
EEEIKQLKKKLSxEFEVKDLGQLRYFLGIEIARSPKGIILSQRKYVLDLLGETGMLGCRPASTPIDPNHKLCAESGDPVN
KETYQRLVGKLIYLRHTRPDISYAVSVVSRYMHDPRSGHLDVVYRILRYLKNSPGKGLMFKAHGHLNVEGYCDADWASCL
DDRRSTSGYCVFVGGNLISWRSKKQSVVSRSTAEAEYRAMSLTVSEMLWVRSLLLELNVLRKGPLKLWCDNKSAINIANN
PVQHDRTKHVEIDRFFIKEKIDDGILQLSHVNSGGQIADSLTKGLGAKECNVACSKMGMIDIYHPS
>Copia-73_BRa#LTR/Copia 36-4144  [Brassica rapa]
MDDPIIPFPFPSKIHILSSVTLKLNDTNYLLWKTQFESLLSSQKLIGFVNGGVTPPDPTRTVVVDEVEVQSPNPQYESWF
CTDQLIRSWLFGTLSEEVLGHVHTLTTSREIWLSLAENFNKSSLAREFTLRRNLQLLTSKGRTLTVYVREFKTLCDSLSS
IGKPVDESMKIFGFLNGLGREFDPISTVIQSSLTKFPQPTFNDVVSEVQGFESKLKSYEDNATVAPHMAFTVQPAQQQQG
ERLNTPGYNPNFRGRGRGSYRGRGGYTTRGRGFSQHQSQPNASGERPVCQICGRTGHIALKCYNRFDNNYQGTAYTLVRV
DESGREWYPDSGASAHVTSSPHNLQTSHPYEGGDAVMVGDGAYLPVTHVGNASITTPSGNLSLNEVLVCPEIKKNLLSVS
KLCDDYPCGVYFDVNHVYVIDIPHQKVIAKGPRSSGLYKLKSTELQAFYSNRQVSASEEVWHHRLAHTNPQTLQHLHSIK
AISINKGKALPVCQPCQMGKSSRLQFFSSSSLVSVPLECIHCDLWGPSPVVSNQGFRFYAVFVDECSRYCWFYPLNNKAE
FFSVFVGFQKLVENQYSRKIKTLQTDGGGEFMNNKLKQHLVDHGIQHHVSCPYTPQQNGIAERKHRHLIELGLAMMFQSH
LPLQYWVEAFYTASYVTNLLPAASRSNKSPSEILHEKMPAYDHLRVFGTSCYPCLRPVAEHKFEPRSLLCVFLGYSPQFK
GYRCLYPPTGKVYVSRHVIFEESSFPFKDQYKHLVPRYETSLLKAWQKATLSEEPAVSEQITRVLPGPIQVIATPTQAPI
PQEVEQEAVPPVVVPHVEEPIQAELQMNQHPMTTRGKSGIQKPNARYALLASKFDAKKPRNIREAMAHPLWNNAVLEEIT
KVHMLHTWSLVPKTPDMNIISSTWVYTEKTNPDGTKAPPKARLVAKGFEQEEGHDYLETFSPVVRTATIRLMLNIAVARD
WPVRQLDVSSAFLHGELSEPVFMYQPDGFVDPLKPDHVCRLTKALYGLKQAPRAWFDTFSNFLIDFGFTCSRADPSLFTY
HKENNTLVLLLYVDDILLTGSCNLLLQKLLSALKSRFAMKDMGTPQYFLGVEMQQYRDGIFLHQQAYAKDILHRASMADC
NPMPTPLPVTINDHSSDLFEEPTYYRSLAGKLQYLTITRPDIQYAVNRVCQRMHQPTVSDFSLLKRVLRYIKGTLHLGLH
INKDNGLRLSAYCDSDWGGCKETRRSTTGFCTLLGPNLISWSAKRQPTVSRSSTEAEYRALGSTAQEITWLSFLLRDLEV
SQPDATVLLCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETRHIPAALQLADIFTKPLAKKQFFDLRSKLGV
CDPPTSSLRG
>Copia-71_MLP#LTR/Copia 220-4797 via tfasty with Copia-104_Mad, 64.1% SW:1481, 1 stopcodon. [Melampsora larici-populina]
MPSNPEPSSPDPTLTDNESEESDSFDDAQSDTHTEVPNMSTTNPEGLLPNEKDAKVFGTPLQQFVQKLTSVLAKYGIDTK
LTDGNFPNWAIEIKQALKAIDFHKHLTKSDFKAPTLSDEQHLKVKLVVSIWMLGLMDSHNKIRCQTMLKLRRSSDEDSDD
EDDDSDDDDDLAYEPSLIWTFLKNHHQKISEAGMQTIEDAINDMKILSTDSFKIHCDKFNNLIADYAKYKGKLTSSQAAR
XLIKTVKSRISENVSENIYAHVVPLTREGVMQYLIDYEARNGGFTTPALVEASRTEYASSAVQSGGGNSRRNKPRCTENK
CISSTHTPEKCFAKPRNKAARDQWIAQMEAKRNNPVFSRPQNSSLSSSISGIRQLSLPSASVSVASTNPFASLHIYLDEP
ESEDITASNSATTTFESSHTVFEEESLAANIVSESGGQWALYDTGATHYMFKSDNLFAAESMVKVDNASKRLKLAGGDVS
LAVHSTGTVKLKSGSGKLFELNNSLFVPDLAQNLLAGGAMLRKGVQVIIHPNDPNCFSLIYKGEALFNGVFASNNLMYVS
LEPVSPISEIASSSTSAEELSMLQHRRLGHLSNRYLKVMCNHRSVNGLPSSITQLEECETCSLSKNHKTPHSSTRPRATR
HLENVHVDLSGIIRVKGIKDEMYYALFSDDYSSYRHIYFLKYKSKESVYDVFRSYIALAERQTCKMLKQFTLDRGSEFLN
DILGNYLSERGINLHLTAAYSPEENGVSERANRTISTKARSMMIESSMPLRFWVQACHTAVFLTNRTITSSLKDNKTPFE
AWHYRKPSIGHLKVFGCLAFSLIRKEIRGSKFNPVSSKGVLMGFEEDNFNFRIFDLASQKLIITHNATFNENVFPYSSKT
DAPAESTSLTPTNPCVNIKYFDDESDDDHAPPTLPDQVLPQTSPVPQDTPAPTVEPSTAVEEPPATSYPRRSGRVKEAVK
YTAVTVGEGLESSSISTAWDRHQHFDCITPNCNMVLTTDDTPKSFSKAVKGPEGENWLAACKKEIQAMHDKKVWYLVDRP
KSANVIRGLWLFxKKPTSDVNNPVKFKARFVAMGNTQVEGEDYFDTFAPTGKPTSLRLMIAIAAFNGWEVHQMDAVTAFL
NCDLDEVIYVEQPEGFKVPGEEEKVCRLLKSLYGLKQSPKYWQDDIEEFLVSVGFIQCEVDHCIYIRRVQNVFTAVYVHV
DDLAITGNDILAFKKEISSRWEMEDLGLASTVVGIEIRRQDNFMYSINQQAYASKILERFDSTEVKPASTPFPPNTKLFK
PNLDEIEEFASRKLPYRSVVGSLMYLSQCTRPDLAHAVGTLSQHLDWPGFQHWGAACHVLRYLKGTINLGIIYSASSAPT
SVKGLKSEHCPQAMCDADWAGDKDTRRSTTGYVFLLANGAVSWRSRLQPTVALSSTEAEYRAITEAGQELLWLRTMMSKL
GYEDLNPTILESDNMGAIHLTNKTIFHGRTKHIEIHYHWIREVVKAGKLVLQHCPTHLMIADLLTKPLGSSQFASLRRLL
GMKTIS
>Copia-70_ZM#LTR/Copia 958-4990 via tfasty with Copia-64_SB, 87.1% SW:5132, 1 frameshift. [Zea mays]
MSANAIVVNIVLDGQNYPEWAFCVQTALRGHGLLFHLTEDSPVLAADRSNAAAIKTWQINDGKVMAAMVNSTKPTMIMSL
SKFTTAKAIWSHLKDRFVQDSGALLHTLMQQTHVIEQHDMSIDEYYSAFDRIMSALTSMVPACTAVPCPAHKFIEKFFTY
RFVMGVRPEFDSLRARLLHSSDTLTMAQALSELLAEETRLKSMSSITGVSSHSVLAAAQRSRNTSFQPCEHCKKTTHRSE
NCFAKFPEKLADFRVRRATRGRGTGPSPRGSVAVAATSSAGALSSSWVLDSGASFHVTSDQSRLASTTPVTEGTSVQTAD
GTLCHVTHKGSLSDSTFTVPNIFFVPQLSMDLLSVGQITDHNCFVGFDDSSCFVQDRKTGDVIGTGRRRKSSPRLYILDT
LRLPSSPTTTPHVLAASGPTTSFAQWHHRLGHLCGSRLSTLIKSGCLGSTHVESSFHCKGCHLGKQIQLPYFTSNSHSAK
PFDLIHSDVWGPAPFVSKGGHKYYVIFIDDHSRYTWIYFMKRRSELPSIYKSFTRMVHTQFSATIKIFRSDSGGEFLSDN
FRQILTIEGTLAQLSCPGAHAQNGVAERKHRHIIESARTLLISSFVPSHFWSEAVSTAVYLINRQPSSKLSGKSPGEVLF
GTSPRYDHLRVFGCICYVLLPPRERTKLTAQSVECVFLGYSPEHKGYRCYDPSTRRIRISRDVSFNENRPFFHNQSTHST
YYPTESTSFMCLPSIPASEPSSSTSTSDVLIPITPPPPPRHPPLYSSKPPIIQTYIRRSRSIPTAGPDTDPVPDSCTNNS
ESNDVFNQGYRLRDRGTIEPPDRYGFPRTAVAIVEPTTYQEASGILEWQLAMIDELAALERTGTWDIVPLPSHVVPITCK
WVFKVKTKSDGSIERYKARLVARGFQQTQGLDYDETFAPVAHMTTVRTLIAVAASSSWTISQMDVKNAFLNGDLHEEVYM
HPPPGVDTPSGHVCRLRRALYGLKQAPRAWFERFISVITAAGFSSSEHDPALFVHVSPKGRTLLLLYVDDMLITGDNSEH
ISHVKQHLSKEFQMSDLGPLSYFLGIEVQQTPKGFYLSQSKYIQDLLDRSGITDTRTAATPMDIHLKLRPKDGTPLADPT
RYRHIVGSLVYLTITRPDIAHAVHMLSQFVSTPTSVHYGHLLRVLRYLRGTRSRCLLYASDSPLRLHAYSDATWASDPVD
RCSTTGYCILLGSSPIAWKSKKQAAISRSSAEAELRALATTTAEIIWLRWLLADLGVSCDTPTPLLCDNLSAIQISHDPV
KHELTKHIGVDASFTRSHCQQKTIDLQYVPSESQLADFFTKAQTRAQHQFHLIKLNASDPPFPH
>Copia-71_PT#LTR/Copia 92-4597 via tfasty with Copia23-PTR, 86.9% SW:5668, 1 stopcodon. [Populus trichocarpa]
MATPTDLVEQNQxGTAAILEDLTTRMTQVLTQNQTPTSAVTYDTATPITIKLNGTNYALWSQIVEMYISGKDKLGYINGD
LPQPHPNDPTFRRWRTENSIVKGWLINLMDPSLFSNFIRFPTAKQVWESIATTYFDGNDKSQVYDLKRRVTRMRQSGESI
ESYYNGLQGLWREIDFRRPNPMECASDIQKYNTLLQEDRVYVFLDGLDDRLDKIRSDVLQLQPFPTVEQAYAYVRREDTR
QSVMLTTNGGPTASVMAIRGGKTSPPLHMTKGQTGYAAPGGGKPNFLKVKGQTEGGGHGCSHCGNIKHTRETCFKLHGYP
EWWNELKAKKLKEANGGTGRASIAYAGPQLSLTPLVESKAETPINHSDQGNDCYYNNSAFIVSKEQRKDDWIVDSGATDH
MTFSPDDLANHTEPRRTSISNANGVMYPVIGAGTVHLSSSISLPNTLLVPSLTNKLLSVGQATEELNCIALMYPTFCLFQ
DILTKEIIGRGTKREGLYYMDDFSSGRVNTMKHSSSTKEKQIWLWHARLGHPSFSYMRQLFPQLFSGLNYLEFKCETCIL
AKSHRVPFPISFNKSDAPFALIHSDIWGPSPITTVHGIRWFVTFIDDCTRMTWLYLLKRKDEVFGVFCAFHAMIQNQFSA
KIRILRSDNGGEYVNQDFVQYFHKHGLLHEFSCSQTPQQNSVAERKNRHILETARALLIGAHVPHHYWDKAVVTVVHLLN
RMPSKVLEFKTPLQVLSNHAPLPSVLMLSPRVFGCIAFVHLHKNQRSKLDSCADRCIFLGYDTNKKGYCCYNPTTKRTYI
TMDVTFSESENYYSSSVSTSPLQGETWKEEQKWWDCPVIAPTVTERDAAVTERDVAGVVDLHADIAVTTTLVEERDDTVD
DVAITEIDAAGNLEHHTPSRQTPLLLVPDNDHSSPENIHKVTSLSPPPNPVLDTPVGYQLPARHNRGKPPARYSPSTKGK
QSQYPISNHVTTQRLPKPLKDFTDKLSACHIPHEIQEALTDPRWTRAVEEEMEALEKNRTWELIPLPEGKKTVGCRWIFS
IKHKADGTIERYKARLVAKGYTQTYGVDYQETFSPVAKLNTVRVLLSLAVNLDWPLHQFDVKNAFLHGDLKEEVYMDIPP
GYTSSPTAGIVCRLQKALYGLKQSPRAWFGRFSMAMKKYGFQQSNSDHTLFIKQRQKKVTALIIYVDDMIITGDDTEEIY
KLQKHLATEFEMKSLGGLKYFLGIEVARSKRGIFLSQRKYVLDLLTEVGMLDCKPADTPIIQNQKLGDFSEQVPTNKERY
QRLVGKLIYLSHTRPDICYAVSIVSQFMHCPSEEHMDAVVRILRYLKSAPRRGLLFSKNGHLEVEGYIDADWAGNISDRK
SMSGYFTFIGGNLVTWRSKKQKVVALSSVEAEFRGMAKGLCELLWLRRLLSEIGFGPESRMNLYCDNKAAIEISHNPVQH
DRTKHIEVDRHFIKQNLDEGVINFPFVRSENQLADILTKAVSSKNFQSSLDKLGIEDIFART
>Copia-72_VV#LTR/Copia 50-4003  [Vitis vinifera]
MSGISSAKFDVVKFDGSGNFGLWQRRVKDLLVQQGMVKALYGKQPEGMNDMDWKDLEAKAAATIRLCLADDVMYHVMDEE
SPATIWLKLESRYMSKSLTNKLYLKQKLYGLKMAEGSDLSQHINVFNQIISDLKRIDVKFEDEDKALMLLNSLPASSTYE
NLVTTLMWGKETLDLEEITSVLLGFNQRKKANDESSQGEGLVAKSNQERGRNKFRSESSNNKSRSKSRKRKDIQCYKCGK
KGHMKRDCPEKKKGGSVSENKEGSSKSANVVAEEDSESGDGDMLSVSSSSDHLTDSWILDSACSYHMTPNKDWFNTYRSV
NSGSVLMGNDASCKVAGIGNIRIKMFDGVVRTLCDVRHVPDLRKNLISLGTLDCNGFSYKSTSGVMKVSKGAMTVMKGQK
LAGNIYKLLGTTIVGGVATAESESDSTVLWHMRLGHMGERGMMELHKRNLLKGIKTCKLDFCKYCVFGKQNKVQFKTATH
KTEGFLDYVHTDVWGPVRVASLGGSMYFVSFIDDYSRKVWVYFMRHKSETFAKFKLWKAEVENQTGRKIKCLRSDNGTEY
TDSKFTELCEQHGIKRHFTVRKTPQQNGVAERMNRTIAERARCLRLNAGLEKKFWAEAVNMACYLINRSPRAALDGKVAE
EVWTGSPVDYSGLRVFGCPAYVHIPNEERSKLDAKSRQCIFLGYQKGVKGFKLWDPKANKVVISRDVVFDEKPMLQCTQK
XEKQEPESCSSNEQLIQVELETHDIEDHARNAGKSSSEDQQHHSIATDRPRRTIKPPTRYGFEDLVSYALITSSGDPTTF
QEAIHSQEKSRWMGAMVEEIQSLHKNQTWDLVELPEGKRAIGCKWVYKKKEAVSEKDGEKFKARLVAKGYSQRKGVDYDE
IFSPVVRHTSIRTVLGLVAHFDMQLEQMDVKTTFLHGDLEELVYMVQPEGFIQPGQEHLVCKLRKSLYGLKQSPRQWYKR
FDSYMIRIGYKRCEYDCCVYVKSLDDDSSFIFLLLYVDDMLIAAKSMVEVNKLKSLLSKEFDMKDLGAAKKILGMEIHRD
RASGRLWLSQHSYVKRVLERFNMDDAKPVSTPLANHFRLSTNQCPKTDDEVKDMSKVPYASAVGCLMYAMVCTRPDLAHA
VSVVSKFLSNPGRMHWDAVKWIFRYLRGTTDYGIMFSKQQSDPSVRGYVDADYAGDLDDRRSTTGYVFTLGGGPICWKSM
IQSLVALSTTESEYMAIAEAAKESLWLTGLVKELGIQQGGVQLYCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELVSSG
ELLLEKVHTSENAADMLTKPVTTEKFKHCLNLINVSSC
>Copia-72_GM#LTR/Copia 47-4048  [Glycine max]
MASNGAASFQVPLLKGSTYDNWSIKMKALLGAHDVWEMVEKGYKEPQDETSLSQAQKETLKDSRKRDKKALFLIYQALDD
DAFEKISDATSAKEAWDKLQTSHKGEDKVKKVRLQTLRGEFESLHMKESESISDYFSRILAVSNQLKRNGEKLEDVRIME
KILRSLDPKFEHIVVTIEETKDLETMTIEQLQGSLQAYEEKHKKKQEITEQLFKMQLKEKEESQGNERSQRGRGRGRGRG
RGQVGRGNSGRGSNFINNSYEKGKSSTRERGRGYTSTRYDKSQTRCYNCQKIGHYASECRFAKNRVEKFETVLLARGGNE
GSQENTWYLDTGASNHMCGKRSMFVDLDESVSGNVSFGDNSKTPVKGKGKILIRLKDGRHEFISNVYYVPNMKNNILSLG
QLLEKGYDIHMKDSSLSIRDGRNNLITKVPMSRNRMFLLNIQNDVAKCLKACYIDASWLWHLRFGHLNFGGLSLLSKEKM
VRGLPSINHPDQLCEGCLLGKQFRTSFPKESNSRAKKPLELIHADVCGPIKPSSLGKNNYFLLFIDDFSRKTWVYFLKQK
SEVFSAFKKFKAAVEKESGRKIKAMRTDRGGEFTSKEFREFCEENGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKS
KKLPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDERRAKLDDKSERFIFIGYDSS
SKGYKLYNPNNKKMVVSRDVVFDEEGQWDFETHEKEYNFFPPLEEEKTPQHVQQELTPSTSTTHEDTLPSPESERVVSRT
RTLQDLYDRTERLDNITLFCLFADCEPVDFEEVAQDKRWRDAMDEEIRSIEKNDTWELVSLPKGHKAIGVKWVYKTKKNA
KGEIERYKARLVAKGYSQKAGIDYDEVFAPVARLETIRLILSLAAQHKWRIHQMDVKSAFLNGVLEEEVYIEQPLGYKVK
GEEDKVLKLKKALYGLKQAPRAWYSRIDKYFQENNFTKCPHEHALYVKIKDGDILIVCIYVDDLIFTGSNPSMFEEFKKA
MIKEFEMTDIGLMSYYLGIEVKQKEDGIFISQQNYAKEMLKKFKMDSCKPIGTPVECKMKLSKFDEAEKVDATNFKSLVG
SLRYLTCTRPDILYATGLISRYMETPTTTHLKAAKRILRYIKGTIDFGLWFSTSNDYKLVGYSDNDWAGDEDDRKSTSGF
VFFMGNTTFTWMSKKQPIVTLSTCEAEYVAATSCVCHAVWLRNLLKELGMSQEEPTKIFVDNKSAIALAKNPVFHDRSKH
IDTHYHYIRECIARKDVHAEYVKSQDQVADIFTKPLKQEDFIKLRSLLGMVNQV
>Copia-50_ZM#LTR/Copia 55-4328  [Zea mays]
MAHSPLPSDDSSDDELVVPAPASVIQSIPIRQHVPVVLDMDEGNYGQWRCFFESALGKFGLTSHVRSSTPYRDRPGEWRM
VDSCIANWILTTVSKGVFDIIRRDCNDAFSLWHAIEDLFQDNELQRAVYLEAELRSLQQGDLSMNAYCTKLKRLADQLRD
IGHPVSEPSQVLNLLRGLNPKYRYVKPVITSKFPAHTFMSARSFLMLEEASIEHDVAVEATHALTVTHGDSSSAVPPSAS
SGTRDNSSFSNTPRHDNRFNAGSTSRSTNRSDRRRGRGNGGRGRFNNQSGPWTAGLNPWQGMVQAWQMPFRAPGAGVLGP
RPPFQPQQAMAAYHQPPPASTGTFDNSALYAALQAAAVPTHPPNTTDWYFDTGATSHMSSSPGNFPPSSLLPFSSSITVG
NGAQLPVTHHAHTSIPTATSPLQLHDVLISPSLVKNLVSVRRLTRDNNVSIEFDPCGFSIKDLPSKAEILRCESNGDLYP
LRLPHQHALTASSMASLWHQRLGHPGQPVTSHILKSLSFQCNKADAHSCSSCRLGKHTRLPFRVSESRSFFPFQLVHSDV
WTSPCYSYSGYKYYVIFLDDYTHYLWSIPLRNKSDVFPTVRAFISYVHTQFHLPILAFQTDNGGEYDSTAMRLLLSSLGT
QLRLSCPYTSQQNGKAERILRTVNDCLRTLLIHSAAPLALWAEALATATYLINRRPCRATRSTTPHELLFGVAPSYTELR
VFRCRCFPNTTAVSPHKLAARSTPCVFIGYPADHRGYRCFNITTGRVITSRHVVFDEGVFPFRDTSNSTLQQATRASSSS
AVSCDTDSDIAPRTGPSTPSPPRLLDVLLQHPTRARTARPGRTPVAGSSNPSAVAGSSNPSAAAPLAPAAPSATPSSSNH
HPTHPMVTRARAGISKPNPKYAFVTTETILPIPRSVRTAVKDPHWYAAMKSEFDALQANHTWTLVSRPPGARIITGKWVF
KHKMNPDGTLARYKARWVVRGFNQRPGVDFGETFSPVVKPATIRTVLTLVATHNWPAHQLDVSNAFLHGNLQEQVYSQQL
TGFVDLSRPDDVCLLSRSLYGLRQAPRAWFQRFVEHVTSLGFIQSKADSSLFVYHHHGETAYLLLYVDDMILSASTRRLV
QHVIARLHDAFAVKDMGPVHHFLGIGVRRNRIGFFLSQGQYAEDLLERAGMTNCKPVATPADTQQEASAGDGILLDDATS
YRSIVGALQYLTITRPDIAYAVQQVCLHMHAPRDVHLTMLKRILRYIKGTIHFGIQLRTASPSTITAYSDADWAGCPDTR
RSTSGFCIFFGNSLVSWSSKRQTTVSRSSAEAEYRAIANAIAECSWLRHLLSELLYRVPSATVAFCDNISSVYMARNPVH
HRRTKHIELDIHFVREKVAIGELHVTHIPSVRQIADVFTKGLPSALFNDFRDSLSVTNATVETAG
>Copia-50_SB#LTR/Copia 85-4545 via tfasty with Copia-60_SB, 3 stopcodons. [Sorghum bicolor]
MTDSASSSTTSSSSSSSMNTLSAPAVFVAPYATINVKNHIPVTLELMKPNFNQWEPFFTSLYGKFGLLPHVDDTEAARPV
DPAWAIADACVRSWLLGSVGPDVIGLAVAPNQTARELWVAIRRLFEANKTPRAIFLGHKFHSMTQGDSSINDYAQRMKAT
ADALRDVGRTITDSELVLNFLRGLNPRFASTADNIADSHPLPDFATTREKLVLKELRLSNEGTVAAQTAFHAACGTGCRT
STTGGGPIAGRQGGYGSSSSNGGGQGSDNGRWKKKGKGSGGSSSGGGHRSPAPAAPWYYYPPWTAGVHQQPWRPQPPATN
QAWRGPGVLGTFPQAQAHTAFAPAxFSDTSAPSPQQHGGWDQAGLVAALNxMSLQGPSPWVLDTSATAHMSSSDGILLSR
LPPPPSGITVGNGTTIPVTCSGTSTLSSPNSIFHLNNVLVALALVRNLLSVRQFTRDNACSIEFDACGFSVKDQQTGRVT
LRCNSGGDLYTYPSTLAHSCSLATTSSLWHHRLGHPGPSSLATLRSMSVISNNKSSSCLCHACQLGKHVRLPFSHSTSVT
TAPFDLLHCDVWTSPVLSNSGFKYYLVLLDDFSHYCWSFPLRHKSEVHRHIVEFIAYAQTQFGSTPKSFQADNGTEFVNH
ATTSFLTAHGITLRLSCPYTSQQNGKAERMLRTTNNTIRTMLLHASMPPPYWVEALSTATFLLNKRPSSSIRNQIPHQIL
HGTLPDYSSLRIFGCLCYPTLTATTPHKLAPRSTPCVFLGYPSSHKGYRCLDMATRRIIISRHVVFDESVFPFSATSSAA
SMLLSLDFLMQGLSSSTTSASTSLPLVDSSEDVLPTLLDPAILQLGPLATPAGGHTPAAPPANGPQPGGQGRPAAPAGGP
QLGGHRFGIVFSRRARPLTTKAAAPAASVAPAAEPAAPPAPPPAPATQPAAEPAAPPAPPPAPATQPVTRSQTGSLRQVQ
RFGFTASVASPTPTNYCSALADPNWCAAMAEEYKALIDNGTWRIVPRPPGANIVTGKWLFKHKLNSDGSLARHKARWVVR
GFSQEAGVDYDETFSPVVKPATIRTVLSIAMSQDWPICQLDVKNAFLHGNLEETVYCEQPKGFIDPAAPNSVCLLQKSLY
GLKQAPRAWNQRFSNFICSIGFTPSKSDASLFVYKAGNDMAYLLLYVDDIIVTASSPALLQHVISSLSSEFAMTDLGDLH
HFLGISVTRDNSGLFLSQRQYAVDLLQRAGMSECHPTATPVEARNKLSASEGALVTNPSEYRSLAGALQYLTLTRSDLAF
AVQQVCLFMHDPREPHFALIKRILRYVKGSLSAGLHLGSGAVDQLTAYSDADWAGCPDTRRSTSGFCVYLGDNLVSWSSK
RQTTVSRSSAEAEYRAVAHVVAECCxLRQLLQELHISIPLAMVVYCDNVSTVYMAANPVHHRHTKHIEIDIHFVREKVAL
GQFRVLHVPSAYQFADIMTKGLPVQLFTDFRTSLCVCDASATTAGGY
>Copia-51_SB#LTR/Copia 49-4395  [Sorghum bicolor]
MSERSDAGGGRGDRIPYPMLTATNYTSWSIRVQAIMEDQGVWEVMEPVEESSQQGAASTAAKKAKDIKAKAHLLQCIPDD
LLMQVAGKKTGKEVWDTLKARFVGEERVRDARLQTLKSDFDALRMKETDQIDQYAGQLSGMAVRYGNLGGSLDDQALVRK
LFDTVPERFIQVIVGIEQFYDLKKLPFAEAVGRLKAYEERTRKSSGSAVKSSDTSQVLLTQAEWEARQKHSSGEGSGKHR
SSGDGGGGSRGRGRGRGGSSGGRGGHSDGSVKRDKSHIKCFKCHKNGHYANRCPGEEKKKEETHHARTVEYEPTVLLAEA
AVLGMSEQTVSVKLLSDEHQTEQKEDYQAQLHLNEVTVIPELHYTNSGESCGEVWYLDNGASNHMTGDLHKFRDLDSTVS
GKVTFGDGSTVEIQGRGTILFQGLSLGQLTEIGCRILMDDNLIEVAEKNPERMIMRVQRSLNRLYKIELKCVEPVCLKSS
VDDESWLWHGRLGHVNFNSMKMLVEKEMAGGLPLIEHPDQLCQSCLAAKQTRGSFPKMSNWRADEPLELVHVDLCGPITP
ETAGGSKYFMLLVDDCTRWMTVYTLKTKDQASEVFAKFKAEAENSVGYKMKCVRSDRGGEFLAAAFKNTCEEAGIKRQLT
APYSPQQNGVVERRNRTVMEMARSLLKSMNVPSVFWGEAVRHSVHLLNRLPTKPMGYRTPFEAWNGRKPQLGHFRVFGCK
AHVRPATPHLKKLDDRSVPMVYFGVEEGSKAHRLYNPQTKRIVVSRDVIFEESVAWDWNTEFGQNSDFVEEETVEVTVQS
YGGDFGGGAADADDTDANPPPGNVEPDGDSQGNQPQNVSGGAPENMQDAESEGHSVQQNGEGLSDNFQSQMSDWENSETH
GTNSNQVGDDDNMDVDHDDGPVRFRSLSEVYEQTTEVELTSDAEIEVNALLAVMEEPTCFQEAAGNGDWMAAMDSEIQSI
IKNKTWSLVKLPAGHKPIGLKWVYKLKKNADGEVVKHKARLVAKGYVQKHGVDYEEVFAPVARLDTVRLLLAMAANWGWE
VHHLDVKTAFLNGELVEDVYVSQPDGYVVKGKEQLVYKLSKALYGLKQAPRAWNVKLDSCLKKLGFRKCKFEPAVYTRGV
GKTKLILGVYVDDLIVTGGDPGEIAVFKKQMTSEFEMSDLGKLSFYLGIEVDQQEDYITVKQTSYAKKVLSQFGMADCNP
TKIPLNPGYKLHEDKGGKITDATEYRRIIGCLRYLLHTRPDLAFSVGMASRFMEHPTMMHLSAVKQILRYLSGTVNYGLV
YTREEKEEKLVGYSDSDHGGDADHRRSTGGMAFYLNDSLITWCSHKEKTVALSSCEAEFIAATAAAMQAMWLRSLLSELT
NRKPMCVTLHVDNISAIQLMKNPVFHGRSKHIDIKFHYIRECVERGGVKVKCIGSLEQKADSLTKAMAVVKLSEMRHLLG
VRELEVHQA
>Copia-54_ST#LTR/Copia 223-4181 via tfasty with Copia-74_ST, 69.1% SW:3926, 1 frameshift and 2 stopcodons. [Solanum tuberosum]
TIDVSSPLYIHPSDSPSILIVQSVFEGVGYRSWRRGVIRSLSVKNKLVFITGECRRPALNSPQYRQWKRCDNMVTSWILN
SLGKEIVDSVEYVCDSLELWKELEDRYDQTNGAKLFQIHKEINDLSQGALDITVYYTRMKKLWEEMNNLNVKDQCSCVCN
CGGKDNMHKAEQDRRLIQFLMGLNEIYTVIRGNILMMNPLPSMAQVFALLVQDEKQREIKPNNQMFMEASSMNSSMHASS
SGASGGASSSGSSAGRQQFQTNYSTSTSYSGRPRPFCDFCKKLGHIKYKCYKLHGYPQNNTNGNRQNSNGYGNHNRYNNA
QNQRFQPNYNPNHRCTKGKGIAANACGTDDTPNTERNDGPSHSSNPNLTKDQYEQLMSMMQQFQMTNAGETNEDQMSSGA
VNFAGMIACNSSIELDTLSCGCFKTKTDLxILDSGATHHMTSTKSHLSNIIVLPYPLLVDLPNGYKVKVTEVGSVKLASM
ITLHKALFIPYFKYNLISIKSLVAHLKCIAIFSDSSCMLQGISMKRPLKIGRVQDGLYVLCPACLHKKCLAVNQSISFHS
NAIGCQHKRLSHSCSCTHLPSPTPCISFLTVMNTIHNNKNVVSDPVSSHLSHGASTDLLWHYRLGHVPFVKIKNISSIPV
KFTAKQPFSCGICPMARQTRLPFPSKSHSTTKIFELLHVDLWGPYHVATHDSFKYFITLVDDFSRSTWTHLLSCKSNALH
ILKAFVNMVENQFKTTIQTIRSDNGLKFTSHESILFFQSKGILHQKSCPYTPQQNGVVERKHKYLLETVRALLFQSKLPV
KYWGECVLTTTFIINTLPSAILHNKAPFTLLYNHEPYYSHMKSFGCMCYPITPKAHRTKFDPRTTPHVFVGYPFGTKGYK
VLNLTTHKIHVSRDVVFHETMFPFTMIDKFTSLTSGSSPPFVFDHFHSDLHEEVYMQPPPGLVLSDSGLVCKLNKSLYGL
KQASRQWYAKLSDALQSRGYTHSLNDYSLFYRKRESFTVFIAVYVDDILLTGTDIEEINNLKGFLHNQFKIKDLGKLHYF
LGLEILCTAVGVIISQRKFVLDLLKEYQCSQFSSFNSPLDATVKLRANEGTLLSDPSSYRKLIGKLNFLTNTRLDIAYGV
QHLSQFMQNPREPHMQAAYHMLRYLMKDPTLGILMSSTDDYKVQAFCDSDWVTCPNSRKSVSGYIVLLGSSPISWKFKKQ
ETISLSSAEAEYRSLxKVVGELTWLDRLFDELTIPRNGLFPVYCDSQSALHIARNPVFHERTKHIEVDCHFVRTKLQEGL
ICLHHIGTGDQLADILTKALTEIKHVVLLDKLAALISPPT
>Copia-53_VV#LTR/Copia 19-3900 via tfasty with TONT2_PV, 83.4% SW:3869, 2 frameshifts and 4 stopcodons. [Vitis vinifera]
MEASLVHTRPDTSKIDPFNGTFFKRxQERVFSVIDVVTVGHILTNPKPEYGFHLLPTWETGNKQVRHAILSTISNELFDI
YCKFKVAKEIWDAITKKYILENAGTQKYVIGNFRNFQMSEDRDVSSxIHDYHLLINDLAIEDIKLPEPFVASYLVETLLE
SWKDYKNNMKHKRKQMSLEDVIIHIRIEEQNRNRDNIDKARELSSKGNVVEEKSKPKNNSSRKQNSRTKPNASNKVQNSS
IKKRGNCFVCGKFGHHAAQCCHKKRIEKTSSKANLAETEVIIVVISFEVRMVTNMKEWVVDSGATRHIYGNRSAFTSYTT
VKEGEKQVFMGNSRFTPVIGKGKVLFKLTSGKVFALCDALHVPDIHWNLVLVSLLGKAGVRILFEYDKIVLTKNDAFVGN
GYCNQGLFMLNVYDIINNNTSSSAYIVDSCDILHGRLGHVNFSYMKKMVELSLIPKLSLENHGKCESCVESKTTKKSCKS
VERESDLLSLIHNDLRDIKNTMTRGGKRFYITFIDDYSRYTRVYLLRNKYEARNAFIKYKNEMENQLSKKIKRLRTDRGG
EYESNPFNSFCEDHGIIHETTPSYSPESNGIAERKNRTLKEMMNAMLVSSGAPLNFWGEAILSACHIQNRIPYKKTGKTP
YELWKGYAPNIAYLKVWGCLAKVLLLEPKKQKLSPKTFDAMFIGYVENSVAHRFLVTKxENNLVDVNTIIETKNADFFEN
IFPMKLNGEQQVQKTNRDKYIEPSEFEPRRSKRNRKETNLGDGFYTFLIDEDPRSYKETITFPNAPFWKEAINSEIESIM
YNHTWELVDLPHGAKTIGCKWIFKRKLKQDGSIEKYKARLVAKGFKQRNDVDYFDTFAPMTRIASIRVLIALASIHNLVI
HQMDVKTAFLNGDLEKEIYMDQPEGCVVSRKEKNVCKLVKSLYGLKQAPKQWHNKFDHVLVTNGYSINDADKCIYNKHEN
NTCVVICLYIDDMLISGTNLEVVCETKKFLGSKFDMKDLGEAEVILGIKITRTPNGLKLSQEHYVEKILRKFEHFDCKPV
STPYDPNSQLKKNREHSIAQIEYAQIIGSLMYLMNCTRPDIAYVIGRLSRYTQSPNQDHWTVVRRVLKYLRGTINYGLCF
SGFPSVLEGFSDANWISDSDEMKSTSGYVFILGGSVVSWKSTKQTCITRSTMDAKFIALEKASSEAExLRNLLADIPLWT
RLVPSMSMHCDSQIAIAKAKSKIFNGKNRHICLRHNIVRQLLETWVIFLEFVRSELNLANPLAKPLNKKLVEETSRGMRL
MPITEVKSGGNPTY
>Copia-49_ZM#LTR/Copia 33-4373  [Zea mays]
MSAYGRRDDGGGRRRSLSPVFPRGRRGGREIIVERIIERSSTAAIYPMLTKTNYAEWSLVMQVNLQAQCLWEAMDPGTDN
FRDDRNALAALLRAVPPEMQAGLARKATAKEAWDSIKSIRVGAERVKEANADRLRKEFADLVFKPGESVEDFAARANTLA
NQLRVVGDDIAEKEVVKKLLHAAPANLEQIALSIETLLDLNDITVEEVAGRLRAVEQRKTTIAAPNKDGGGRLLLTEEEW
RERAKMKDHGGKAASSSGWKQASGRGRGRGRGRSRGRGQGRGGARKDDECLSCGKLGHWARDCRSKKKAEQAHAAQAQDV
EGEEEDSALLMATTEISMSGGSLASEEPGTLALRRVHLLEAKIIPRLDAPEERDECSWVLDTGASNHMTGIRSLFSELDK
GVGGSVRFGDGSTVAIEGRGTIVFMCKNGEQRALTGVYYIPRLTANIISLGQMDEGGCRVDINHGILRIFDRKKKLLVRV
RRTAGRIYQLQATIGRPLCFAAHSSEVSWLWHGRFGHLGFDNLRKLAREEMVRGLPTLDPVDGVCDACLAGKQRRSPFPV
QARRRAAQVLDLVHGDLCGPISPSTPSGNRYFLLLVDDKSRYMWVKLLARKDEAASAIKNFQSAVEVETGRHLKVLRTDR
GGEFTSVEFGQYCASRGVQRQLTAPYSPQQNGVVERRNQSVVSMARCMLKSKGLPGYFWGEAVSTAVFIINRSPTRALSG
QTPYEAWFGERPPVHFMRIFGCVAHVKNTRPGLKKLDDRSTPTIFVGYEQGSKAYRCYDPQAGRVVVSRDVVFDEGAKWT
WDRTSDRRLEDAVDDDVPFMVEDEVHSAPPISSRATTPAPTQATTTSLSPASPATVQPAASPASSAEFVSPPTGFEGVLD
ADHDEDAPLRFRVIDTVLGPASPPGLAPRVLDEELMLTTADEPTSFAEAEQEECWRQAMKEEMKSIEANGTWELATLPTG
HRAIGLKWVFKVKRDGSGKVVRHKARLVAKGYVQRAGIDFDEVFAPVARIESVRVLLALAAHHGWEVHHMDVKSAFLNGD
LKEQVFVAQPPGFVVDGKPDKVLRLHKALYGLRQAPRAWNAKLDAAMAQLSFQRSRSEHGVYTRSSSTSRLVVGVYVDDL
IISGSSSKEIAAFKQEMRSIFSMSDLGLLSYYLGIEVSQNAHGITLCQAAYARKLLERCGMASCNSSSTPMEERLKLSKH
SNSPAVNATEYRRMIGGLRYLVNTRPDLAFSVGYLSRFMEAPHQDHLMAVKRVLRYVAGTCEHGIHYKKSREGQAQLVGF
SEGGRAQLVGFSDADLAGDVDTRRSTSGVIFYLGDNPITWQSSKQKVVALSSCEAEYIAAATATCQALWLARLVTDMAGV
QPGTPELKVDNQAAIALSKNPVFHDRSKHIDTKFHFIRECVDQGRIILQHTSTETQLADILTKPIGKTRFHKLCSLIGIQ
QVGEIME
>Copia-43_MLP#LTR/Copia 48-4652 via tfasty with TNT1, 60.3% SW:1441, 1 stopcodon. [Melampsora larici-populina]
MSSDQDKFFAQTTESIPGSDTSSSSREGDETVRNITSSLKPSTSANPHPPGPYMSKSVQNPKTVEPASSISTMSLPSNQI
SQRQQAINLSQALNKLSRKILTEESFPVWLSYIRGELNSLFLADYLKSDELKTEDAQLSDEVCRACITSWMLGTMDDVNR
SRFEPKITNYTDDGPETQNLPAKLWSAVNSHHLSRSEELCLLLEQSLNLIVQSANLPLLTHIENFQNAVTKYKTAGGKMS
DEDLGRKLLMSLNNNYFQDARDLAIKGVSEYEKVVTELKKRLDAVAMITRAPQVSRQPTLVHQSAKASAVSNSSYRNKFQ
NKCTKRQCTGTNHTPDQCFKKPGNEHLQREWIEQRVKMGQWSGEVPKDLNVTSASATVFHEEPSIQQLEEAFNGLNPTAS
HVSIKSLSSNQSGTPGITRVLIDTAASHHMFKEKHVFANYQDVLNKGDSLYMAGGKETLRIHGRGDVHFVGPDGHLFKLQ
NCLHIPDLKxSLIGGTILLKNDFITVKEGIQFKISKDGNCAFEGHLHDQVHLLELTVRHLSRDEINPKANHISSISEADI
TRLHQRLGHPNIQYLRTMVRNESVQGMNISLSHIPDVFHCNSCDLAKGHKIPHNKIHVRSQHLLDNVHLDLSGIIRTNSV
CGSNYFMLFTDDYSRYRHVVGLSTKSANVVFNKIKQYISLVERQCDRKLKMITLDNGYEFINDTMVPYCKEAGIYLRTTA
TYTPEENGVAERSNRTITEPARAMMIQANLPVRFWLYSIKAAVYLKNRTISSSIPAGTTPFELWNGRKPDVGHVRPIGCL
CYVLIRKPLRNGKFDQVSRQAVLLGHTDHNLNYEVFIFDSNTIVISHNVVFRDNNFPFKKLKSFDVSHLSFDDDAPLLLS
DPSAVEPLQGEQGNDAEEPGGEGMHQAYDNINTNLLVDSQHIPDTDDQVIAPEDDQIHQPIESEPVVEDEPEDDVPRRSG
RARVPTDFYRPSASFAYWEDDGAFMNFHEYGYYAFAVGPVVRLINEPHNFKSAMNGPDVEKWKEACEKELENTKEKKVWR
LVPRPANHPVVGSKWHFKVKLNPDGSINQHKARIVAKGYTQTYGLDYNQTFAPTGKPASFRAVVAFATYHGFEIHSMDAV
AALLNSRLKEKIYMEQPEGYEMKLPDIDDDDLVCELLQALYGLKQSAREWNDDFKEKCIKAGFKQSEADECVYIRCGGND
IIVFYLHVDDLAITGNAIKAFEEEMSGFWKMEDLGISTCVMGIQIVQASKHHYIIGQEAMSWSLLERFGMMDCKPASTPF
PGGLKLTKATDDEAKAFALLNFPYNSGVGSLMYLSQCTRPDIAYAVGCLSQHLQRPALRHWEAFKHVLRYLQGTLSYCIH
YNNENLSTDVISNNAYSLPEHFADADWAGDKSTRRSTTGYVFMLCGGVISWRSRLQQTVAKLLTEAEYRAANEAGDEMIW
LALFLKSIGFHQSVPYILNCDSLSAMDLADNAVLHGRTKAIEIQMHWKRDKVKDGTLKLVHCNSEDMIADLLMKPLHPGK
FNHFRRLIGMRSVDE
>Copia-42_ZM#LTR/Copia 78-4387 via tfasty with Copia-17_SB, 1 frameshift. [Zea mays]
MASPVPISQAVTIRLTKANYLLWRAQALPYLRSSKLMGFLDGSKPAPATTVVASTVDGATPIPNPEYDRWFDQDQQLLSG
LLSTMTEDVLRDVVLAKTSKEVWDSLQKKFASSTKARTVQIRVELATLKKRDLSAADFFHKIMGLANELAAADAPLCDEE
VLAYLLAGLPVEYDPFVTSMTTKSEAFSLDDVFAHLVAFEARRLHTRRTCNCSSSASANYAGRGGFNRGRGRGYRGRGDR
GRGGRSRGGAPARGPRRGSTSRPECQICGIVGHTAIKCWYRMDESYQEEGPSAALASSHSYQVDPNWYSDTGATDHITSD
LDRLAMREQYHGGDTVQVGNGAGLRILHTGSCSIYTATRPLALNNVLHVPDISKQLLSVHKLSRDNNVFFEFHPWYYFIK
DRATRKLLLEGKCESGLYPLKPSDIESLHQALVGYSARPEQWHARFGHPSPQIVRSILHLNNLPCLKESSASSVCNACQL
AKSHQLPYTNSIHRTTMPLEIIHSDVWGPAPISIGGYKYYISFIDDFTKFTWIYLMHDRTEAQRIFLQFHKHVERLLDIK
IRCVQSDWGGEYQKLHNQFFTSLGIAHRVSCPHTHQQNGSAERKHRHIVETGLALLAHAGMPLKFWDEAFLTATYLINRL
PTRVLDNLSPMERLFQSPPNYSMLKIFGCACWPHLRPYHRHKLEFRSKPCVFIGYSSLHKGYKCLDMETGRVYISRDVIF
DEAVFPFSNPSSNSAEQPGDSSFNLNTNHLHNLLPVNSMPVAPSNAAASATGTTAPSMECTPCVPSLTATQPLPCAVPSG
QQAPSGPHGAPSLTANQPLPCVVPSSQQAPSGPHGGAPTPDLLGSSPTADQHAAGPAPADFSPSDPGTDSPEDTAGTIGS
PVDVDNQQVPHVHPYGTRLRNNIRQPKIRTDGTVTYSVSRVCSSEPSSHVTAMKHPLWRQAMHDEFDALLKNKTWHLVPP
RAGLNVIDSKWVFKLKHNPDGSIARYKARLVAKGFKQQYGVDYDATFSPVVKPTTIRLLLSLAVSRNWFIRQIDIQNAFL
HGVLDEDVYMKQPPGFEDSAHPKFLCKLDKSLYGLKQAPRAWFSRLSGTLIQLGFQASKAGVSLFIFNQDGLQIYILIYV
DDIIIVSSSSSATDKLLQQLRCEFAVKDLGQLNYFLGIEVHHTSSGLILTQRKYIRDLLLRTNMDTSKGVSTPMLPADKL
SLHDGVPLSPDDTTKYRSVVGTLQYLSLTRPDITFSVNRVCQFLSTPTTSHWAAVKRILRYLHATIDLGLCFTKSTSSLL
SAFSDADWAGNPDDRRSTGGFTIFFGGNLISWASRKHSTVSRSSTEAEYKEVANATAEVIWIQVLLHELGISQHRPPILW
CDNIGATYLTANPIFHRRMKHVEVDYHFVRERVASRQLDVRIISSSDQVADIMTKPLAGPAFSKICTNLNLISYRPD
>Copia-44_ZM#LTR/Copia 1-3516 Fragment [Zea mays]
WYPRPRHRSNFPTPSPSPLQPRRLNQTAPLVKQASQGGSGAQAGRTLGILGSSPQAHTAFAPLQASSSSSNTSTSTWDAA
GLIAALQNMQLQGNSPWVVDSGASTHMTSSDGMLTQRLPPSISSITVGNGTSIPVMSRGHSVLPTLTTNFALNNILVAPS
IVRNLLSVRQFTRDNNCSFEFDAHGFSIKDLRTERVILRCNCDGDLYTMPASTPGAPPHALLAASSTLWHQRLGHPAPAV
LERLNKLHVISCNKVQHSLCHSCQLGKHTHLPFSSSHSITHAPFELVHCDVWTSPINSLSGFSYYLVCLDDYTHYCWVFP
LRKKSDVHQHLVELAASAQTQFSIPVKCFQADNGTEFVNTATIKFLAAQGTHLRLSCPYTSPQNGKVERIIRTLNNSIRT
MLLHASLPPTYWAEGLLTACYLHNRRPSSSIQHEIPYTRLHNQPPTYSHLRVFGSLCYPNMQATSKHKLAPRSTACIFLG
YPSSHKGYRCLDLSTRRIIISRHVTFDETTFPFAATSDVSSSASLEFLLDDGMVSVPCPTVVAGGTPSSTPVVAPSHSDV
EQPPPDVAASHDSPSATPGGRGPVPPPGPDVVPFPRVYVCRSRTTSTSEPAAVPAAPMTSSPPPSPRVTRTMTGAIPRAC
YEGLAATTSSSPSPLPTNYRSALADANWRAAMMDEYQALVDNNTWELVPRPPGANVVTGKWIFRHKFHADGSLARHKARW
VVRGFSQREGVNYDETFSPVVKPATIRSVLSIAASRAWPIHQLDVKNAFLHGHLEETVYCQQPPGFVDPGAPDHVCHLQK
SLYGLKQAPRAWYQRFATFVRHLGFVASISDTSLFVLREGTSLAYLLLYVDDIILTASSSALLQRIMTRLSSEFSMTDLG
ALHHFLGIAVTRSSDGLFLSQRQYAVELLQRAGMAECHPTSTPVDTHAKLSATDGDLLSEKDASEYRSLAGALQYLTLTR
PDLAYAVQQVCLFMHALREPHRALVKRILRFVQGTLSSGLHIGTGSVTKLTAYSDADWAGCPDSRRSTSGFCVYLGDNLV
SWSSKRQTTVSRSSAEAEYRAVAHVVAECCWLRQLLQELHIQLPSATVVFCDNVSAVYMTANPVHHKRTKHIEIDIHFVR
EKVALGEIRVLHVPSSHQFADIMTKGLPTALFREFRSSLCVREPPAATAGGC
>Copia-47_PIT#LTR/Copia 5-4228 via tfasty with Copia-4_PR, 69.0% SW:2742, 1 stopcodon. [Phytophthora infestans]
MMSSKSAASYTTKLKLFNGTGFPAWGAQVKLVLEIKGLWDAIQLPMPTEQDLKVEKDPAAAGSESSSASGTPSAAAASVA
AVAQVKEAVGETTTPFHDLMIRQKMASSIILAALDEKIAAEVYLLDHPMAILRHLRMTYNVKCSASVGAAKREYIGLYLD
GDNSMIDHIKNTRRVIDELQEQRVVLSDEEKRQNFMQSLGPAWNGFVGVLESCATFELMIQRCQAEAIRRDQQKNRRSTA
GSGSGKGAAAFSAEQTAGKQKAGKPKKKRDMSRVKCYKCGKMGHFARDCKTDESPSKAEAASVAFTVDDATDDNKRGWIV
DSGATSHMTGHFDNLINVRELTEPRVLTVASGDNLVATAVGQAPLEKDGREVCVLQEVLFVKGLARNLISVAAASRRGMT
VEFKGASCIIRSPSGVSVLASREGQAMYVVDATSVAVEQAAMMTAETPHLETWHKRLGHLNSRSVHQLLEDLKVPWHGTV
NQSCPTCVSGKLAQKPFAVKGRRVLKNNQMLLAIDYVGPMQVTAREGYTGLANIVVEPFHLEMAYPLREKSSRAQLDAVK
DCIAKLKAYAPEYRVAFIKSDNAAEYVGGEFAAYCSKFEIVQEFSTPYSPQQNGKVERSNRVIVEMARTLMQGANLPNAY
WADAVVCAAYIRNRCPTKVLDGKTPMEAFLGSPPDISNLRVFGCKVQVLVPKENRKKLDSKTRNGIFVGYATGGAYLVHI
PDRGTGETITARTVVFYEDQFLPPRDEEEVKIYTQLDLAQQELVNRMEGQLRLEDVEEEKEDVVMRSTANRSIDSEATET
PxQPPSGPEPVGVVRQQARLRGDPRVEKAIPLPRRSSRIPKPSQRRLNYEESHLSLEQVCNMVEERLAPAQEDGTSISDG
FIYRQLTPSDLTNWALGVEPINLDEVNASEDRNEWEQAMDDEVQSLVDNGTFVEAQLPSGRSAIKSKWVFKKKTNADGSL
DKYKARLVAKGFSQHAGEDYSETFSPVIRHSTLRLVLVIVVIKRMKRLQLDVKTAFLNSNLDEEIYLEPAEGYRRCKGCV
WRLLKALYGLKQASRSWYEHLCAFLNAQGFRQGQADYCLFVKGAAEDLVIVLIYVDDILIFAMRDEDIVSFKAAMEAAFE
VNHFEDVNFFLGLELTWSPSGDAVCVGQRKYSHTILERFGMEKTRSAATPMEERYRDKLFLDEDICEFKPRPAIGALLYL
SVISRPDLATAIRLLAQETERPTRAVEDGINRVFRYLNGTRDFGLEFKQRDESGLVVYCDAAFSVERESHSSTGFAIFYC
GNLVEWGSKKQSMVTLSSTEAEYIAMGTGVQECIGLNMVLKDLRMEAAEILVFEDNQGAQHLAESKAVTQRSRHINTKYH
WLRQKVKEHEIRIQYCPTSEMVADHFTKPLGTIKFKYFRDELGVRRVG
>Copia-46_BRa#LTR/Copia 101-4594  [Brassica rapa]
MSLDSTATNQEASTEVSPYRLHPSDNPGALITSVQLTHDNYPEWSTELRNSLQAKQKIGFIDGTIPKPADDHPDLGRWLA
ANSMIVGWIRTSIDAKVRSTVTHVPDASKLWETLRFRFSVKNGTRIHQLQDAITNCKQDGKSVLDYYGRLSKLWEELQNL
KSTRTCTCAAAADIEKEKEDAKVHKFLFGLDDSRFQSIRSRITDEEPLPDLNIVYSRVIREEQNMVTTRSKEERSDALGF
SIKTEGSKNSSTISSDSAPPRYRDPSRSCTHCGRSGHDVSECFLVHGFPDWYNEQQRHNNSSSGNRGGRGGRSTGGRGRG
RGRANAAHTTPPINSEQIASLISLLQNQQSNLSSERLSGKTTLTDVIIDTGASHHMTGDLSLLRDVYDIPTSSVTFPNGR
RSHATKHGTLVLSEHYSLHGVLYVPDFTCTLISVSKLLKQTGCIAIFTDTLCVLQDRFSRALIGAGEEREGVYYFTGVKV
ARVHGAAKSSPSTSVLWHRRLGHPSYKVLSTLPVFDSLKIDFSDSSQCDVCFRAKQTRKTFPDSINKASRPFSLIHCDVW
GPYRTPASCGAVYFLTIVDDFSRAVWTYLMLEKSEVANLLQNFCAMSVRQFGHQVQIIRSDNGTEFMVLKTYFRNNGIIH
QTSCVDTPQQNGRVERKHRHILNVARACLFQSKLPITFWGESILAAAHIINRTPSQVLDGKTPYELLHGAPPVYDLLRVF
GCLAYAHCRPRNKDKFGERSRKCLFVGYPFGKKAWRLYDLETNEFFISRDVVFFEDQFPGMGTTEYVSPPRMQDNSMDDW
LLPTLQSRGSKTPDVSPIPPITSIPATPAVSHPTTFSPSREPPTSSTSPNPDSSTTPLSHNPEPSTSPHPEPPSTPKTPS
PSSPTVLPPLTPNVTSTIDELEHASKSPGLLEVLGRGHRTKKSSVLLKNFVTHAASATPPSHVSPSSTQSSSTTVPGKSL
YPIDDYLSTPAFSAAHQAFLATITSDYVPTSYKEAVLDERFNGAMKNEVTALEDNHTWDVTNLPPGKRAIGCGWIFSNKY
KADGTIERPKARLVAHGNRQKQGSDYKDTFAPVAKMNTVRFLLKIAAVKRWELHQMDVHNAFLHGDLEEEIYMKLPPGFK
TDDQSKVCRLRKSLYGLKQSPRCWFSKLSKTLVAFGFKQSYEDYSLFSLIDGDKCLHILVYVDDFIIAGNDSSTIHRFKE
YLNKSFKMKDLGKLKYFLGLEVARGPEGIFLSQRKYALDIITECGLLGAKPSPVPTELNHKLALAKGPLMDDPSRYRRLV
GRLIYLTFTRPELSYIVHLLSQFMQQPRDEHWLAALRVVRYLKGCADQGIMLSSSPDLNLTAFCDSDWSACPLTRRSLSA
YIVLLGDSLVSWKTKKQKTVSRSSAEAEYRSMADATCELKWIKRLLQQFGFSHQQPMHLFCDSQSAIHIAKNPVFHERTK
HVENDCHTVRDAVQAKLITMEHISTKNQPADLLTKALPAPTFQHLLSKLGIQQISLPT
>Copia-54_VV#LTR/Copia 318-4417 via tfasty with SHACOP8_MT, 86.6% SW:4547, 1 frameshift and 3 stopcodons. [Vitis vinifera]
MASTSVTSMSSQPSSIPLFEGENYNFWCVKMKTLFMSQDVWDLVENGFDEPDNVITLTPIEKDQLKELKKMDAKALLFIQ
QGVGNNIFPRIMRASKAKEAWDILQxEFQEDKRTRSVKLQALRRELENMKMKENETLNEFSSKFMELVNQMKSYGEEISD
KRIVEKLLISLPNKFDPIVAVIEETKDFSLLCVQELFGSLKAYEQRLLRHSEKSVESAFQxKISLNSRNVERKPISNENR
SDSSRGGRTGRGRARGRDGRGRGRFNYGRKFTNEEGSSFSKCNICKRSSHVEKDCWFKGKPQCFNCKKFRHVQKDCRFKN
KQQASCAEEKEADENMFYACQSAAEQKNNVWFLDSGCTNHMTGNKNIFLNMDTTINSQVKMGNGDLVNVKGKDTIGIQTK
VGTKYIRDVLFVPALEQNLLSVGQLVEHGYKLHFENNECTIYDKERRRNLVKKIKMEKNRSFPIVFKYAENVVLRMEDVE
EAWLWHRRFGHLNFNSLKMLCQRKMVQGLPNTIEEKNEVCDGCALGKHHRQSFPKGVAWRAKKVLELIHTDICGPMSTPS
QGNNKYFVLFIDDFTRMTWVFFMKQKSEVFSIFKKFKSFVEKQSGCYIKTLRSDRGMEYTSSQFGNFCEDEGVERQLTVA
YTPQQRGVVERKNQTVMEMAKAMLYEKGLSKIFWAKAINTAVYLLNRCPTKALLNKTPIEAWSGRKPSVRHFKVFGCLCY
SQVPKERRSKLDETCEKCIFMGYSSQSKGYRLYNLKTNKLIISRDVIFDEKATWNWEEGKILKKTILVDELQTKAPVETG
NGSTSTSSPQESPRSVPLSPSIESPTSSSSSPSSTPRKMRSLTDVYERCNLCIVEPQSFEEATKDEDWRKAMEKxIDVIE
QNETWQLVEKPKDKEIIGVKWIFRVKYHSDGRVQRLKARLVAKGYSQQSGVDFHETFAPVARLDTIRTIIAVAAQKGWLL
YQLDIKSAFLNGKLEEEIYVEQPQGFVVDGEENKVYKLKKALYGLKQAPRAWYTQIDNYFIENGFIRSKSEPTLYVKSKD
NSQILIVSIYVDDLIFTGNDEKMVEKFRNEMMKKYEMSDMGLLHYFLGIEVYQEEDGVFICQKRYVEHILKKFGMAGCNP
VSTPLVVNEKLRKEDGGKMVDETHFRSLVGNLLYLTATRPNIMFAASLLSRFMHYPSHLHLGAAKRVLRYLQGTVELGIK
YFRNIEVKLIGHCDSDWGGCIDDMKSTSGYAFSLGSGVISWVSKKQGSVAQSSAEAEYISASLATSQGIWLRRILEDIKE
KMKQSYLLCDNKSAIAIAKNYVFHSRTRHIAVKYHFIKEAISDGEVQLMYCKSEEQVADIFTKALPLEKLVHFRKLLGVE
EHHIKGE
>Copia-59_VV#LTR/Copia 1095-5267 via tfasty with Copia-84_VV, 74.5% SW:3239, 3 stopcodons. [Vitis vinifera]
MTSFNPLANILTQKKLEGPNYVDWKRNLDILLTAEEYKFVLSEVCLEKPGEGATQDQIKAHQKWVKADEMARCYILASMS
NVLQHQHQKMDTAYDILENLKEMFGDQTSAARQNTLREILTSKMEEGTQVRTHVLKMMSLLNDMEVLGAEVDKATQIEMV
LNTLPPSFQQFRLNYNMNKMDFTLSKLLNELVAAQTIIKQGAAPVVLNIERVFSSVQKKGKKKKNVKPNNNGAANGVNGV
VKKPKGKCFHCKQPSHWKLQCPTWLAKKKQGTSPFHLLVVETCLAVLTTHQWCVDLGATNHVCNSLQGFQETRQLSKGEV
NIFLGNGSEVAVLAVGNIALNFKNNRTLFLKNVLYVPSIRRNLIPISSLSKNGYSVCFNEFYDDSVVIKFREQMICSGSL
IDSLYILKVTPELQLTNSEVNNFDIVAPLKRKRPIELSYTYLWHLRLGHINLDRISLLVKDGPLSSLKVEALPTCESCLE
GKMTKRPFPLKGNRANDVLELIHSDLCGPMSVQARGGFEYFVTFTDDYSRYGYIYLLCRKSECFEKFKAFKAEMEQRHGK
YIKTLRSDHGGEYISREFITFLSEQGITSQLSAPGMPQQNGVAERRNRTLMEMVRSMMSYSDLPISLWGHAIETAAYILN
LVPSKSVPKTPTELWTGRKPNLKHVRMWGCPTHVLKGKTDKLETKTELCFFIGYPRxTKGGLFYSPKYKKIIVSTNAHYL
EENYIRNHIPKSQLALNELRGDTIPARIFPSEHEPEPFMVGADIPLPQRSGRNVSGPKFETSDISLPVGDEENVEAPVHV
PFEEYIDEVQDVVPPVINLPALQPQQDEGVAEQPVVLRRSGRTRRPPVQYTLLGEAFDRIPEEVNTEPVCYDDALQDKDA
DKWLVAMKSEMESMYSNQVWELVEPPKGVKPIGCKxIYKKKRGIDGKVQTYKARLVAKWYTQKEGIDYEETFSPVAMLKS
IRILLSITAYFDYEIWQMDVKIAFLNGSLDECIYMKQPEGFITNGQEHLLCKLNRSIYGLKQTSRSWNTCFDQTIKTFGF
DQCHDESCVYKKWNGKKVVFLVLYMDDILLIGNCIGMLTSVKDWLSQRFDMKDLGEAAHILGIKLMxNRKKMMIGLSQAL
YIDTILNRFNMQGSNKGFLPFRHGIVLSKDQSPKTPEEIESMKAVPYASAVGSLMYAMLCTRPDICFAVGMVSRFQFNPG
REHWTAVKHIIKYLKRTRDYMLVFQSENLVPIGYTDSDFQSDQDSRKSTSGNVFVLGSGAISWRSIKQTCVADSTMEAKY
VAASEAAKEVVWLRNFLLDLGVVPSVQSPITLYCDNSGAVANSKEPRSHKRAKHIERKYHLIRDIVQRGDVVVMKIASEN
NLADPFTKSLSSTTFERHVEGMGVKVADAWL
>Copia-59_PT#LTR/Copia 218-4780  [Populus trichocarpa]
MVTASQLQLLQSPVTALISSIPTSVNVKLDESNYLNWNFQMQLLLESNGIMGYVDGLLPCPPQHCSISAESGITSSSSQS
DEYIVWKMHDRAIMQLITATLSPIAMSCAISSTSSKDLWLRLKEQFSTVSRTSIFQMKSNLQTIKKGSDSVSQYLHRIKE
ARDYLSAAGVYFANEDIVILALNGLPAEYNTFRCVIRGRESVISLKDFRSQLLAEEVIIDTSVNSPFLSAIVASTGDTYT
QGSFSPHHGQSQVPTRQFQPYNGNKNRGKGRFTQGSRFFASRPGFSSMAPVLPNSNSGLLGQSPTQQFRHPSALMVPICQ
LCNSEGHTAPFCGASPPKRTRCNICGRSNHTSWYCFYNDKGPNYIASYSPQSSFSLQPQSLQYPSYPAPSSQNREVHQTP
MQVMQQYTPYQASSSQNREVPQSPMQAMHTVIHSASPASCSSGSSQVWLTDSGATNHMTADLANLSLASPYPSTETIHTA
NGEGLTVSHIGHSTLHSSISPIKLHSVLCVPQITQNLLSVHRLCLDNNCRLIFDALCLWIQDKVTGRILYKGLCSNGLYP
IHSFSPATSQQPYQATTYLGQLVQSTLWHHRLGHPTNNIVSLILNKAHVHVSKTPTPLMCHPCLEGKFSKLPFPQHVNKS
VIPFHTIHTDLWGPAPSISVDGYRYYTIFVDECTRYCWLFPLVNKSDLFSTFVDFYSFVSTQFASTIKTLQTDGGGEYTS
NRLKLFLLNKGISHRLSCPYTPEQNGVAERKHRHIIETTITLLQTAKLPSKFWSYACQTSTYLINRMPTVVLHHTSPFEM
LFGSSPPITHLRIFGCACFPLLKPYNSTKLQAKTTKCVFLGYATNYKGYLCYHVPTMRMFVSRHVIFDEHQFPYSDLVST
PSNILQSSPLSSCPVTIVNTANSIVSTSSVSPSHPSTTHTPAPSTDSVSPQSITAPLSASPLLPVAPDISMQSDLDSHGF
IPDNLQVVLSIPPLNLHSMQTRSKSGIIKRKALLATIQVPATPEMQLVEPTNYKAALKIPVWLQAMKAEVDALHTQGTWS
LVSLPANRNLVGCKWIFKIKRHSDGSLARHKARLVAKGFSQEPGLDYGETFSPVVKPTTIRLVLALAAHFNWSLRQLDVK
NAFLHGILQEEVYMAQPPGFEDLNHPQLVCKLHKSLYGLKQAPRAWNDRFTQFLPSLGFETTYSDSSLFVKHVGHEIVVL
LLYVDDIIITGSASGVIQQVISALTSEFHLTDLGSLHYFLGIQITHTAAGLFLSQTKYVEDLLAKSEMSEAKPCDTPCLP
YHRLLKDDGEPYPNPQLYRSLVGALQYLTFTRPDIAFSVHQVCQFMQHPMMSHFTAVKRILRYLKGTLKFGLSYTRGDLQ
LKAFSDADWAGDPNDRRSTTGLVVFLGNNPISWSSKKQQTVSRSSTEAEYRALSFTSAELDWIKQLLAFLHISLPGVPVL
FCDNLSAIALSFNPVQHQKTKHIEVDVHFVRERVSRQQLSVQFVSSQEQFADILTKGLSAPLFHTHCCNLMLGSSPLDLA
G
>Copia-60_Mad_gag#LTR/Copia 1435-2418 via tfasty with ATCopia27, 2 stopcodons. [Malus x domestica]
MSNLNKLDFTALEVSGRNYLKWVQDVKLHLTAKGIRATIEEPTDDEPVDEAQKATAMIFIRRHIHDALQTEYLAEEDPRT
LWLALADRFDHQKDIYLPEARHDWQHLRFQDFKSVNEYNSEVCRIRSLLKFCKVDLTEQDLLEKTYSTFNATNIVLQQQY
RAQKFTKFSDLISVLLLAEKQNQLLMKNHQARTLAxSACDQFxQPQTTEKPSWPWNGRQAQPRAQGQQSKGPPKGGNLTQ
KRQPLAPKAPNFKNKGKATVQSASTELDMCYRCGSKDHWSRVCRATPEAIAKYHSRRESNFAHVEHPEDATTSMEISDFQ
EASAPMEE
>Copia-61_BRa#LTR/Copia 337-4950 via tfasty with ATCopia90, 83.5% SW:4925, 1 stopcodon. [Brassica rapa]
MATSPSTSTRPLVDQYENPYYLHNSDHAGLALVTDRLASGADFHSWRRSVRMALNVRNKLGFIDGTILKPSADHRDSGAW
SRCNDMVSTWLMNSVSKKIGQSLLFMSSAECIWKNLMTRFKQDDAPRIFEIEQKLSSIQQGSLDISTYYTELVTLWEEYQ
NYVDLPVCTCGKCECSAAASWEKLQQRSRVMKFLMGLNESYEATRRHILMLKPIPPIEEVFNLVTQDERQKSIKPATRVD
NVVFQSSTSEFDQSHYSGPVENAAYATVNNNNSYRSRPRPICTHCGVAGHIVQKCFKLHGYPPGHRFYNNNNSQRSNSQH
NPQSGSSQRPLQTKPAQSYSKQNNVANVTTASSIAPQAGTLDLTAFHPDQVHQLIQQLQSHMRPPDSLASQSLVNASITD
KGFMAAQSSSGIVSNFSFPSTSLRFEHQSLTFQHQTLSSLSTNLPLGSWIIDSGATTHVCSDLAMFSSVSLVSGVTVSLP
NGAKEPITHTGTVHLSDSLVLLNVLHVPSFRFNLISVSSLLQQHRHSAHFFFDSCHIQEHTQGLMIGRGSVIHNLYILDQ
QMLSPSLNFCGSLKVDGSLWHQRLGHPSSAKLQHLSADIALDKSSLLEHASCPVCPLAKQRRLPFPHKNNMSKEPFDLIH
IDTWGPFSVESVEGYKYFLTIVDDHTRVTWIYMMKYKSDVSVILPSFVKLVRIQYKANIKMIRSDNAQELAFSNLIRENG
IMHQFSCAYTPQQNSVVERKHQHLLNVARALMFQSSVPLQYWSDCVLTAVFLINRTPSLLLNKISPYEKLTGKKPDYSFL
KSFGCLCYASTLQKDRHKFSPRAEPCIFLGYPSGIKGYKVLNIETRIVSVSRNVLFHETDFPFQKLESSSKPDNIFSHSI
LPLPVPVAIDSAIPVHVPLHSHASSSSSALPSVPSSVPLDGGAVTSGTTNTELGRARPKRTGKAPTYLSDYHCSLISMDS
SLKNHYVANIISSPSSEPLYPLSSVLSYDNISFSFKDAVLTCSLETVPTSFKQAVKSEFWTKAMNVEFEGMDRNETFTVV
SLPPGKNVVGCRWIYTIKYNADGTVERPKARLVAKGYTQQEGLDYTDTFSPVAKMTSVKLILSLAASQGWSLDQMDVTNA
FLHSALDEEIYMSLPLGYTPPPGVSLPPNPVCRLNKSIYGLKQASRQWYNCFSSVLLANGFSPSPGDHSLFVKSSGSSFI
ALLVYVDDILITSNNLQAVLDVKKVLHQAFKIKDLGPARFFLGLEIARNSTGISVSQRKYALDLLADTGLLASKPCAVPM
DPSIPLSATTGVSLPDATPYRELIGRLLYLTITRPDITYAVHRLSQFLSAPTDVHFQAAHRIIRYVKSNPGQGLFYAADS
ETCLNAFVDADWASCPDTRRSVTGFCVYLGKSLISWKCKKxQTVSRSSTEAEYRSMALATCELIWLQQLLTDLKITVQHT
AKLFCDNKSAIHIATNPVFHERTKHIEIDCHTTRDQVKKGFIRLIHVISADNHADIFTKPLHPSPFHHILSRMSVTSLFT
PSSSSPSTSSTLPSISEA
>Copia-60_ZM#LTR/Copia 69-4245 via tfasty with Hopscotch, 84.6% SW:4892, 1 frameshift and 1 stopcodon. [Zea mays]
MSSTAAIINPLVGQAVSEKLAKGNYQLWKMQVLAVVRGVRLEGYLTGAAAAPATTIKDKDVDVPNPAWEDWKTTDQQVLG
FLLSSMTKEALTQVAACKTATETWKVIETIYSSMTKARSINTRIALATTKKGDLTIAEYVGKMRALGDEMANSGKPIDDD
ELISYIITGLDYDYNPVITSLVARADPLTIREVYSQLLSYEQRLDLLRESDSYSVNAATRGRGSSRGRGGNRGGGSRDSR
GRGRGRSQSRxIGIGNRNAPQQDSRPKCQLCGKRGHLVMKCWHRFDENFVPNEKYAGAAATSYGADSNWYVDTGATDHIT
GDLERLAVHDQYRGHDQIHTASGAGMNISRIGYSTVPTHNRDLKLNNILYVPQVTKNLVSVHKLATDNSAFLEFHPNFFV
IKDQATKRPLLKGRCHKGLYPLPLTSSKQAYGATRPSIEKWHSRLGHPSVPIVEKVIRRFNLPCSSEKNKQSVCDACQKA
KSHQLPYPKSSHVSSHPLELVFSDVWGHAPNSIGGNKYYVSFIDDYSKFTWIYPLKFKSEVFQKFVEFQTLVERLFDRKI
ITMQTDWGGEYQKLHSFFAKVGISHHISCPYAHQQNGSAERKHRHIVEVGLALLAHASMPLKYWDDAFLAAVYLINRTPS
KTINYETPLERLFHQKPNYSFLRIFGCACWPNLRPYNSHKLQFRSRQCVFLGYSNFHKGFKCLDLSSGRVYISRDVIFDE
TIFPFSSLRPNAGRRLQQEISLLPPSLQHSDIITGYGGQHVDNHVPTCSTNTTNPCALSSPPVQDTAGSNDASGPSTEAE
SPMPAPVDDAALPAMQLDESAIHDPPAATDAPPLGSSAPGGDQQQSQHMEQRRPSTRLQHGIRKPKVYTDGTIKYNFLTT
SGEPRNLEDALSDKNWKNAMDAEFMALEKNRTWHLVPPQKGRNIIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGID
YEDTFSPVVKPTTIRIVLSIAISRGWSLRQLDVQNAFLHGILEEEVYMKQPPGYEDKEKPSYVCKLDKALYGLKQAPRAW
YARLSKKLFYLGFRSSKADTSLFFYSSKDVSMFILIYVDDIIVASSKQEAVSALLKNLQEEFALKDLGNLHYFLGIEVNK
TQNGILLTQGKYATDLLRRTNMANCKPESTPLSTSEKLHLHEGSLLGPNDATQYRSVVGALQYLTLTRPDIAFPVNKVCQ
FLHAPTTSHWTAVKRILRYVKSSISLGLSLCKSSSFLVSGFSDADWAGCLDDRRSTGGFAIFLGNNLVSWNAKKQATVSR
SSTEAEYKALANATAEIMWIQTLLNELKVSSPSVAKLWVDNMGAKYLSFNPVFHARTKHIEVDYHFVRERVARKLLDIDY
VPTGDQIADGFTKALTVKKLENFKYNLNLRKL
>Copia-58_VV#LTR/Copia 50-4033  [Vitis vinifera]
MSSQKFEVEKFNGSNDFTLWKLKMKALLVQQKCAQAIEGEEKLPVGLTAAEKEEVVSRAHSAILLSLADEVLREVADETT
AVGLWRKLESKYQKKSLTNRLYQKRRLHTLKMSEGMQVRDHFDNFNRIILDLNGVGVKVEEEDQAMILLCSLPSSYENFV
DTMMYGRDSISINDVKDALQSKELQKLVSGSGEGSVEIGLTVSRGRSMERNGGGRSKSRSKSKAEMRCFHCKEKGHFRKN
CPQRQKRIGQGSNGNAQVVVAQKDSEKQDSSDEGEGGDVLIVSTSSSAESWILDTGASYHMAYSRDLFTTFKEWNGSVKL
GDDGELGVKGSGSVQIKMYDGLVKTLNAWYVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGALVVMKGRLQHGIYTLM
GSSVLGTAAVSSSMAIDSVEKKDNCTELWHRRLGHMSEKGLSILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHT
TKGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEAFRKFKEWKTMVEKRIGKVVKTLRTDNGLEFC
NKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDSGLSKKFWTEAVNTAAYLVNRSPSTAIDFKTPQE
VWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFG
DLAGTSKTDLGANQKVEFEVDAPMENGVDDTSEEQPVIDQNDSQSIAARRPIREIRRPMRYVDCVSANITNPVAFALAVA
EEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPERVKPVDCKWLFKIKDGISEDEPPKYKSRLVAKG
FSQKEGIDYNEVFSPVVKHKSIQVLLAMVSVFDLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCLLKKSLYG
LKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDSSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAK
KILGMEIWRDRDAGLLYVSQQKYIEKLMQAFHMDHSKPVSTPLAQHFKFDHSTLPSTDEEVEYMKSVPYSSVVGSLMYAM
VCTRPGLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVYGNGDVSSGLVGFTDSDHGGDLMKRRSLTCYIFTL
FGCAISWRASLQPTVALSTTEAEYMSLTEGVKEGMWLNGFLGSLGLNLSKPVIYCDSQSALCLAKNPVYHERTKHIDVRL
NFIRDVIEEKLFSIEKVATEVNPADMLTKPITTEKFKHSLDLVNVCKV
>Copia-57_Mad#LTR/Copia 19-3957  [Malus x domestica]
MDQQSVNVNGAVPKYSEKPEKFKGLDFKRWQQKMLFFLTTMNLAHVVKEEAPKSNENPMTRETVMAIEAWNHSEFCCRNY
ILNSLDDNLYDIYSLCKTAKELWESLEKKYKIDDAGSKKFVIGKFLKYTMVDSKSVVSQVEEIQKLIYELHSEGCEINEH
FQVGAIIEKLPTSWNDFKIYLKHKRREMNMEDLILRLRVEEDHRKADRSGGFAAIEANANYVEGGNSKAKPKKNKAPAPK
TKQFVQSALAPKGKNLKKIKGACYVCGKSGHKAQDCYHRKDGNHANGNNNNHANMATTDEELAAVVSEVNMVSNVSEWLM
DTGATKHICADRNLFTEYHPAALGEKLYMGNSASSAVEGKGKVVLKFTSGKSLTLLNVLHVPEMRRNLVSGPILIAKGFK
LVMESNKFVLTKGGMFVGKGYVADGLVKLNVIAIDDANKINASTYIVESSNIWHARLGHVNFRSMHRMVKLELLPKFEID
FNHKCETCTESKFARQTRKSILERSNELLGLIHSDLCDFKSTPTRGGKNYYVTFIDDCSKYCYVYLIHSKDEALNMFKTY
KAEVENQLERKIKALRSDRGGEYESTAFSDFCAQHGIIHQTTAPYTPQQNGVAERKNRTFKDMINSMLNSSGLPHSLWGE
ALLTANTILNKVPLKKIDESPYELWKGHKPTYKTLKVWGCLAKVQVPLPKRTKLGPKTIDCVFIGYANNSAAYRFLVVKS
SISDIHVNTILESADAEFFEDIFPYKEKESGSNTKRVHDHSHDEASSSGVQGNDVEPRRGKRIKVSKNFGPDFIAFLSEN
EPRTFKEAMSSSEAPLWKEAIKSEMESIMENNTWELVDLPPGSKPIGHKWIFKKKLKADGTIDKFKARLVAKGYRQKEGL
DYFDTYSPVSRITSIRTLIAIAAVYNFDIHQMDVKTTFLNGELDEEIYMEQPEGFVLKGQESKVCKLVKSLYGLKQAPKQ
WHEKFDHTLLTHGFKINESDKCVYIKSNDKTCVIVCLYVDDMLIMGSDKDVINKTKKMLNSSFDMKDLGQADVILGIQIK
RNSEGYVLTQSHYAEKILRRFGQFDCKPAATPFDAGCKLEKNKGDAISQLEYSQVIGSLMYLMNSTRPDLAYAVSRLSRY
TSNPAQEHWDALVRVLRYLKNTLDYGLHYTKYPPVVEGFSDANWISDTTESKSTSGYVFTLGGAAISWKSSKQKCIARST
MESEFIALDLAGEEAEWLKXFLEDIPMWPKPVTAICIHCDSMAAQSRAKSHVYNGKSRHIRRRHNTLKKLLSNGIISIDY
VKSKENIADPLTKGLPREQILFTSRGMGLKPIQ
>Copia-56_PTr#LTR/Copia 160-4629 via tfasty with Copia43-PTR, 3 frameshifts. [Populus trichocarpa]
MLSSAASPPGFSSAMAGERLLLQPTSAASAAASIISLSHTHQVISLKLTNTNYLYWRMQMMPYLLGQGVFGFVDGSNTCP
SPHVLAADGISLQVNQLFLRWKQQDQLILSALLSSLSMEVLHLVVGCQTSCSAWRTLEQALASTSNSRIMQLHGSLQDLR
QGDESVTQFMQKAKALFDELAAAGRPVSLEDFNLYVFRGLRGEFKDLVTSLVTKAEPLSYADLHSHLLTHEFLHKSSAAI
HAPLLPTPNTPPSALVAQRQTFGNFGRNRGRFNGGWRPNQFSSRGNRSAGSRPDHRSFHSSSFGDSRQGNWQRNRGQNPR
CQLCQTFGHTAPHCPQLQQRGYGQQPTANLAQRNLSSTGSADWFPDTGANQHVTPDLATLTASEPYLGNDNLHVGDGKGL
PISHLGHTKIYTPHRSFTLSNVLHVPAITKPLLSVQKFCLDNNVYFEFHPRVFYVKDLNTNEVLLSGQSKDGLYALTRSS
VTSVPQAYWSPCTSASADLWHRRLGHPTSRIFQLLVSKNKIICNNKRLNFQCQSCPLGKSSRLSLGPTGHKTSAPLELIF
SDVWGPAPLFSSDGYRYFVIFVDAYTKYVWYYPLVAKSDVYSVFHQFQTLVERQFSLKIKSVQTDWGGEYRKLSTFFQTI
GIHHRLICPHTHEQNGTVERRHRHIVETGLTLLGQCKAPFRFWNYAFETSVYLINRMPTPVLAHRSPFDCLFQRSPDYHF
LRTFGCLCFPFLRPYNNHKLDFRSSPCVFFGYSSSHLGYRCFDIASHRIYISRHVRFHEHVFPFDNSEQIAKVSTTTPTQ
PATATLPNLLNHPPLPTSTSHPNSPQTQLCHSTTATRPQPPPLPCPSSHACLSNHYDAGSARQLVSSPHGLGALSSPSSA
SPSLASIPADSVSADSPSSADSPLLAAASSSSSPAGLNLVVDLSSYQLPQVSSSATIFPCVPPALSRHPMVLRPRQPKTA
NLVASAAATTASTRVLHSPSSEPLAFSDADRYAVWHDAMCDEIAALRSNRTWSLVPFHPSMNVVGSRWVYRIKRRVDGSI
ERYKARLVARGFTQQEGIDYSETFSPVIKQATVRLVFSIAVSRNWKIHQLDIHNAFLNGVLTEEVYMKQPPGFVDSSLPS
HVCRLHKSLYGLKQAPRAWYTRLSDFLLSIGFQASKVDTSLFILSDGTNIFYLLVYVDDILLTGSNSAMLHHLIQLLSSE
FKLRDLGVVHYFLGIEVQSTGMGLMLRQHKYILDILTRAGMTSCKPVDTPVSPSKVTILPDHSFSDPTRFRQIMGALQYL
TFTRPDICFAVNRVCQFMHAPTDSHWAAVKRILRYLKGTTSYGFHITRGSSFALHGFTDADWAGSIDDRKSTGGYLVFFG
QTPISWKSGKQRTVARSSTEAEYKALADGTAEVIWLQYLLTDLQVPSVSAPTIWCDNLGATYLSANPIFHARTKHVEVDY
HFVRDRVAKKEIQIRFVPSRDQLADVFTKPLPVASFTAFRFKLRVDPPPSA
>Copia-58_MLP#LTR/Copia 57-4556 64.7% sim to Copia-6_SMo, SW:1479, [Melampsora larici-populina]
MSSDHADNPIDDSQDNSTVTEGSSTSSSADSFGTVHQDLSNPLSSDVPPGTSTSKIPVSNKMSENTNSRVFGDQIQKYSQ
IMNNVLSKYKVSENLTDDNYIEWSQSLMEVFRSLEFHHYVKIKDYRNSTLTNEEHEKTCFNLTTFILHRLDSVNNVRTRN
HLTDPADACEIVYDPYMCWNFLKTYHNRVSEDKLEAVTKALYSCQITKTDSLTSFVDKFENLIREFYRLKGELSDIQSAR
MLLGAIPSLSIETKEYIHNTVIPLTREGVGTYLRKYEERHGWTCAAIREVNSVSVRPSKPTSGECTPEHCLGPHLAKNCW
SKPENAKKQLAFLSKIRGKTGGGNSNSASSHHSQAPQVKGVKKVFDSSVNTASASPAFLSLNVEFDDEPGGKQVTASPSE
FEEDPDISASVSASLSSSRDWALHDTGATHHMFKDKKFFDPSTLVKIDDASKRLKLAGGDISLAVHSRGVAKLLAGDETP
FELKNSLYVPDLSRNLIAQALLKKQGVRELFHDGTNFSLVLNGLAIFNGFISDNNLMFILLEPVSGQHSTSTSISTSVTE
ITASLQHHRLGHVSNKYLKLMAKHDSVEEFDYLDENLNCDICSLSKNTKLPHNKTRPRARTFLENVHVDLSGIIRTTGFN
NENYFILFCDDYSAYRHIYSLSDKTKEEVYEAFMAYIAVAERQTGCLVKQFTLDRGSEFLNNLLGSKLKELGITLHLTSG
HAPEQNGVSERGMRIVVTRARSMMLESALPIRFWCYACSAAVFLTNQCITTALEDGKTPFEVWFFRKPSINHLRVFGCQA
FGLIRKELRQSKFSPVSSEGVLVGFEHDNFNYQIYDLSSKKIYITHHSTFNEDVFPFQTLSTKFPLLPAEPLKNSVRVRF
FDDDEDDDLVDSLDKIVTLRPSSPAVDPPTDSLGIQPSEKTVQEPPRRSNRSSKKIHDSLKGMCSSSAEFEFDFITESFF
ACLPPECNLSHVLSNSPDPKSYKRAMASSESELWKAACDKEFNSLREKGVWLLVDRPSDRNVIRGLWVFRKKILVDGSTK
FKARFVAMGNTQIPGQDYGETFAPTGKPGSLRILIAIAAIHGWEVHQMDAVTAFLNGILHEELYVEIPEGYRTQSTVGKV
WRMKKSLYGFKQSLKIWQDDVEGFLIEIGFYQCEIDHCIYIRSVGNLFTAVYVHVDDLAITGNDIAKFKVEISSKWEMED
LGLAHTVVGIQISRVDEHSYSMSQQQYALTVLKRFDMLESKPAITPLSPNVKLLKSTEEEAHDFALTKLPYRSVVGSLMY
LAQCTRPDMAHAVGVLSQHLESPNKLHWDLAMHVLRYLNHTVNIGIVYSGTAPKVVTGQRSFQCPVSHCNADWAGDANTR
RSTTGYVFVLAGGPISWRSRLQPTVALSSTEAEYRAITEAGQELIWLRNMMARFGFTDPNPTVLQSDNLGAIHLTSKSIF
HARTKHIEIHYHWIREVVKKGDLAIKHCPTHLMVADLLTKQLPKEQFSNLRKAMGLRFIG
>Copia-58_ST#LTR/Copia 147-4700 via tfasty with Copia-73_ST, 78.1% SW:4197, 1 stopcodon. [Solanum tuberosum]
MAISEGLNSGANASTAVGREVIGDSHHPLYLQSSDTPGSSLVSLQLTGSENYSLWSRSMKIGLLGKGKIGFVDGTSSKDK
FPTSLHALWEKCNAIVLSWIMISVSRELLSGIVYASSAQQVWIDLKERFDKVDGSRIFYLHKEIATLSQGISSISTYYSR
LKELWMEFDSLMPVPGCACTESQAYAVHFEYQRLMQFLLGLNESYNQCRSQIMMMDPAPSVNKAYSLVIAEESQRILGKA
NSVGDVSPPTGNLNEALAFFSGNNTHQSFLGSTTRGSSSGGAGSGSGIGGSNFRPRKNPNSHLYCDYCNWKGHIRAQCYK
LHGYPADWKGRRRPSPSSANLVGSTNCPGAPPGGGNSTTGVSHAFMTNIPPAALSQQSHSSPQPQPHPHFSHQxYMQILQ
LLDSGHGKTDIDSTVRTTGKFSTDKWIIDSGASKHMVHNLHMLTRYKPISASQEGRVYLPTGNLATVKHIGSSQILGGIE
ISNVLHIPEFHYNLLSVSKLTKELNCTVLFYPDFCIFQDLFNGIVRGIGRLENDMYVLTTACQLQPKRNPLQALQIQSTP
VPKTCPVSTLLPSRISLSIWHKRLGHVPFTTLRKLGCFTHLHNSTDIPCTVCPLAKQSRLSFPLSNSTTSCCFHTLHADV
WGPYRVPTHDGKRYFLSLVDDHSRYTWLILLTSKSDVMVALKRFLVMIGNIFSASVKILRTDNGCEFFNSQVTEILQSLG
ILHQSSCIYTPQQNGVVERKHRHILDVARSLRFQSGLPLRFWGECVLTSVYLINRLPSTVLKGKTPYDLLFLKSPSLTHL
KVFGCLAFATEVRKVDKFAPRAVPTVFLGYSTLQKGYKLFSLHTKEFLVSRDVIFKEEFFPFLHTSSTCSPLFPVVQFTD
SSLSPAAISPDIVSPAATSIFPDQSISLRPDTVAPACPSPLLDLSVSSSPADSAVPLPLRRSSRPSKPPIWHHDYLTSKP
QSSCLYPLSNHVSYQCLSVPYAAALAAYSSTPEPKSFHEAALDPLWVEAMQAEITALEENHTWSITDLPPSKHPIGCKWV
FKVKYLASGAIERYKARLVAKGFHQQEGLDYSETFSPVAKMVTVRSVLADAAARHWPIFQMDVHNAFLQGDLLEDVYMVV
PPGFGRQGESGKVCKLHKSLYGLKQAPRQWNLKLTEALLQLGFVQSHYDYSLFTKRESKDLIVVLVYVDDLLVTGSCSDL
IVKTRNDLKLKFKMKDLGELKFFLGIEFARTKEGYVMNQRKYALELISEMGLSGAKPVHTPLDPNMRLTSIEYDSHIQDT
DTMARDKPLADVGRYQRLVGRLLYLTMTRVDISFAVQVLSQYMHAPKESHIEAALRVVRYIKSSPGLGLFMPSQSSELLT
AYCDSDWGTCVQTRRSVTGYLMKFGGALVSWKSKKQETVARSSAEAEFRSMASTVAEITWLIGLYSELGVKIKQPVDLFC
DSKAAIQIAANPIFHERTKHFDIDCYFVREKLLKGMIKTHHVSTREQLADLLTKGLWKASHSHLMSKLGLKDIFQPSA
>Copia-58_PT#LTR/Copia 107-4015 via tfasty with Copia-2_CP, 80.2% SW:4115, 1 stopcodon. [Populus trichocarpa]
SNNFVQAAIPRFDGHYDHWSMLMENFLKSKEYWSLIEKGIGAARGEGVQSAAQQKVIEEEKLKDLKVKNYLFQAIDRTII
ETILNKETSKAIWDSMKLKYQGSTKVRRAQLQALRREFEVLGMKEGEKVDEYFTRTLTIANKMQVHGESMKQNVIVEKIL
RSMTSKFNYVVCSIEESNDSSTMSIDELQSSLLVHEQRMQGQKEEEQALNITNSEKMGGRIEYRTEGKERFRGGFRGRGR
GRGRQPYNKALIQCYNCQKLGHFQYECPVRNRNDRNAYFAEVDEEEEMLLMAYKDEGDHEEAKEEERVLMTHEDIQQKEE
FVWILDSGCSNHMCSNKEWFFEFDDKFRRTVKLGDNSKMMAMGKGHIKLNIKGITQVFTEVYFIPELKNNLLSIGQLQEK
QLAIHIKDDKCRVYHPKKGLIMQSQMSSNRIFLKxQKQLATVITPMASCLQATSEDVTNLWHCRYGHLSLKGLKTLVSME
MVKSLPALNDSLKVCQDCMKGKQHRETLPKKSLWRASKKLQLVHADICGPISPQSNSGKSTHGIKRQLTTAYTPQQNGVA
ERKNRTIMNMVRSMLSGKELPKQFWAEAVNWSIYVINRSPTTAVPNTTPEEAWSNRKPSVECFRVFGCVAYAHIPDNQRK
KLDDKSFKCVWLGVSEESKGYRLYDPVGKKIITSRDVVCVENEKWEWDRSAEELKHKELEWADINEEEDSEISGGFEGVN
SHPEHADGVHNDNSSSSLVDSLPDGISQNDKQERCRRKPTWLTDYVTDEALSEGEEEGGHNLAMLISTEDPVTFEEAVKS
EKWRTAMDTEIKAIEKNNTWELTVLPAEAKPIGVKWVFKTKLNEEGKVDKHKARLVAKGYSQRQGIDYNEVFAPVARWDT
IRTILALAAHKGWYVYQLDVKSAFLHGELAEAIFVEQPQGFEKQGEEHKVYRLKRALYGLKQAPRAWYSRIETYFVKEGF
EKCFCEHTLFTKTSDKGSMLIVSLYVDDLIFTGNSKCMFKGFKDSMMREFDMFDLGRMKYFLGVEVIQNAELIFICQKKY
AREVLGRFGMEHSNAVQNPIVPGCKLTKNEENAKGVNTTEYKQLVGSLLYLTATRPDLMYAVGLVSRYMERPTEMHLQAV
KRILRYLRGTTEFGIIYRKGDEGQLRAYADSDYAGDVDDRKSTSRFVFMLGTGAVSWSSKKQPVVTLSTTEAEFIAAASC
ACQGVWLRRILGNIGLEQVTSTVIYCDNNSAIKLSKNPVLHGRSKHIDVRFHFLRYLTRDGVVELVYCNTQEQIADIMTK
PLKLEAFLKLRDKLGMSMMQKLN
>Copia-143_SB_gag#LTR/Copia 54-2009 [Sorghum bicolor]
MSTPNDMDPILLQNDGSNFLSWSIHVLNTFRTISPLVEQIVDASISHSIVDWFSYKNIPKEEEIYVQLNALATNVILSTL
SVEVQDEAIFNGQTLPSSAHVIWVKLYELYGKPNDNECYVWKTKDNMSTILHCNEETSSNLKSAEPKLIKADAAVLAVQR
IPDVSDMIPDVSGMAVAAGQQADQCSNNAPQWRPSDESTIESHDSHHLCLMAKKSKKKKKKKETKQEKAQEDDQRESENE
DSHMLDHLSSKDKLMFMKLANEEQDQKFHDQDKSLISKLEELKEMNERYEKLSIEHDFVTNALSSVVQLEKENFELKKRL
DKISCNFNTLQVVHEQLKCSHESLVESHAMLEIAHEVVVTMVKSSQPHTHPLTSTPSKLNISCANECASQASQSLIEHDP
MENIRLKEEVEKLKKDVIRLKGKEKAQPSQDNRENMVKKLEKGSNLASSNIQQTNHITSKAMSTKSKKHGKRLCYGCGAY
GHMRDMCPNKSWANKCEVAEKKASSKLANQLKMDEPKASIKCNKVSHLSNTCKDFKKTRNKAQVATRRCYACNEVGHMIY
ECHNKQNKDCSNKGRICYNCRRKGHLSYDCPKGNMPKPNAYVFNDKLRRTTNGSSTSQARYSPHASTRATWVPKHIATNS
IGPNKSWVPKCA
>Copia-141_SB#LTR/Copia 60-5375 via tfasty with Copia-37_ZM_gagpol, 2 stopcodons. [Sorghum bicolor]
MAQIVFNHVGGKPPFFDGTSSFDYWKRKMKMYLGSINDRVWEVTENDFVILDPANPTDNERANKQCNTMALNTIYNGIDS
KVFEQVKDLEKASEVWTRLEETYEGTTTVKSAKLYMLKDKLSNFKMKDDESIPEMFYRLQVIINDLKGLGEKVKDEDFIH
KFLMCLPKRFKTLRTIIFRGGLTGVSPNEVLGDVMTEDQYNDNDDDEVMKKDDDDKKKKSVAFKASSSSKSKNKGKAKKE
ESSDEECSNDDSDDEALALFVRKFGKMMKKKGYHTRKRRDNSKNKEHVRLCYKCKSPDHIVADCPYNSDNDEHEKKNKKE
KKEKKEKKMVFKKKKKGGSYVVTWDSDASSDDDSSDDDKASKKKALASIAINNKPSLFDTPSCFMAKGHKVQYDESESES
EHEHDSDSDDENEFTNEQLMDMLEQADSLIQSKNKKCKELAKKLKALEQSFDELNANHERLVEAHEKLGKAHTKLEKAHS
LLLEENKEKVVVSCDVGTTCDLIKESPNPPIVVATNSSCRSSSTTTNSTSTSSVSVTCDTSLKVENETLKREVDELTHAL
GKAYGGEARLLKCLGSQRFSLNKEGLGYTPKKGKKAFATHKPSFVKSNGRYCNKCKQVGHLELNCNKMNKNKKNANVPYI
PFDSCYVLTKGEKGVHAKFVGTPIVGPKKKAIWVPKSLVTNLQGPKQVWVPKKHxFVLxVNYKAGGRHWVLDSGCTQHMT
GDSRMFNSINPNDDNGVDSITFGDNGKGKVKGLGKIAISNDLSISNVLLVESLNFNLLSVAQLCDLGFKCIFGVDDVEII
SVDGSNLIFKGFRYENLYLVDFNASEAQLSTCLLTKSSMGWLWHRRLGHVGMKQLNKLVKHDLVRGLKDVTFEKDKLCSA
CQAGKQVGNTHPKKSIMSTCKAFELLHMDLFGPTTYTSIGGNKYGFVIVDDFTRYTWVFFLSDKSDAFATFKSFVKRIHN
EFETTIKKVRSDNGSEFKNTRVDELCDEFGIRHQFSAKYTPQSNGLVERKNRTLIDMARSMLSEYNVSHSFWAEAINTAC
YYSNRLYCHPMMEKTPYELLNGRKPNIAYFRVFGCKCYILKKGTRLSKFEKKCDEGFLLGYSTTSKAYRVWNLASGTLEE
VHDVEFDETNGSQEEDENLDDVRGTQLADAMKNMDIGDLRPREVIDVEDDKDQVLPTSNVQASGSHDQNQASTSGTQVQD
QQASTSSHDQPSASNQVQILQPTNIARDHPLDHIIGDIQRGVQTRSRLASFCEHFSFVSHIEPKKIDEALRDVDWVNAMH
EELNNFKRNQVWELVERPSDHNVIGTRWVFRNKQDQDGIVVRNKARLVAQGYTQVEGLDFGETYAPVARLEAIRILLAYA
CAHNIKLYQMDVKSAFLNGYINEEVYVEQPPGFEDDKKPNHVYKLRKALYGLKQAPRAWYERLRDFLLSKGFKMGKVDTT
LFTKKIGKDLFVLQIYVDDIIFGSTNQEFCEEFGNMMANEFEMSMIGELSYFLGLQIKQLKNGTFVSQGKYIKDMLKKFG
MDDAKSISTPMGTNGSLDSDTSGNMVDQKLYRSMIGSLLYVTASRPDVMFSVCMCARFQASPRESHLKATKRILRYLKHT
QNVGLWYPKGAKFELVGYSDSDYAGCKVERRSTSGTCQLLGRSLVSWSSKKQNSVALSTAEAEYIAAGSCCAQILWMKAT
LKDFGINFKQVPLLCDNESAVKLTNNPVQHSRTKHIDVRHHFIRDHQQKGDICIESIGTDDQLADIFTKPLDEKRFCKLR
NELNILDFSNMC
>CPSC4A#LTR/Copia 38-4345  [Oryza sativa]
MSDDGGRYTPPGRRGGGGGGGSGSGRGGASGSGVGGGADGANLPLVPQGRDAGHTARLPVLSRTNYPDWALLMRVNLQAQ
GLWTAIEPGYAEYRDDRAALSAILQAVPREMLRGLEKHDTAKAAWDAIKTMRVGVDRVREAKEQGFRRQFEAMRFKDGET
PEEFAMRLTAVVADIRDMGGVMEDEHINKKLLRVVPKKYKPVAISLEQLLDVKTMALEELVGRLSTVDSYSDDEEEGGGG
KLYLTEEQWQARARKQEQEGSGGSSKSRGSSGTQNNRRGKAGGSPKGKETINSGNTSRDYSKVKCFNCDEFGHFARQCRK
PRRQRRGEVNLTQGEEEPTLLMAHVMGVSLAGEETLGRTPGVHEVHLTEKKVILDHEVAEEEDNTTEWFLDTGATNHMTG
SRSAFADLDTGVVGTVKFGDGSVVDIRGRGTVLFQCKNGDHRSLEAVYFIPKLCKNIISIGRLDARGYDAHIYHGVCTLR
DPDGLLLAKVKRSPSFLYILKLNMARPICLAANGTETAWRWHARFGHLNFQALRRLAQAEMVRGLPVIDHVDQLCDGCLA
GKQRRVPFPDKARFRAQDALELVHGDLCGPIAPATPGGRKYFLLLVDDMSRFMWIRLLSGKHEAAAAIKQFKAGVEMESG
RKLRALRTDRGGEFTSVEFTEFCADRGVSRQLTAPYSPQQNGVVERRNLTVVAAARSMLKAAGMPAQFWGEAVVAAVYLL
NRSPTKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVSRRFYVSRD
VVFDEAAMWPWRDPEVTQTGGEEDFTVEFFSTPLGGNRVPDVVVEHGGARETETAPSPLATPDAAPVWSPVTSSSPAGVE
FCTPPSDASIESDGAPPRFRTVNNVLATTTPVLDFDYDDECLIAEQEPFSFKEAEKEQCWMKAMEEEMSSIEGNNTWFLC
DLPSDHRAIGLKWVYKIKRSAEGEILKYKARLVAKGYVQQQGIDYEEVFAPVARMETVRLLVALAAHEGWQIHHMDVKSA
FLNGELEEDVYVVQPPGFVVEHKENKVLKLKKALYGLKQAPRAWYAKLDSTLANLDFVRSATENAVYTRGEGNARLVVGV
YVDDLIITGALGTEIAKFKEQMRSMFSMSDLGLLSYYLGMEVKQTEEGITMSQAGYAGRILEKAGMQGCNPCQVPMDARL
KLKKGVEDCIDATQFRSIIGSLRYLVNTRPDLSYSVGYVSRYMENPGAEHWAAMKHILRYVAGSLNIGLKFRKGEEKFPR
LVGYSDSDMAGDVDDRKSTTGVLFKLGENLITWQSQKQKIVALSSCEAEYIAATTAACQGIWLARLLGELQMKKPCCAML
KVDNKSAINLCKNPVLHDRSKHIDTRYHFIRERVERKEVEVEYTSSAEQLADILTKPLGKVRFLELRGKLGLSPV
>Kopi1_pol#LTR/Copia 6-2150 Fragment (misses N-term), via tfasty with Copia1_DR, 2 frameshifts and 1 stopcodon. [Takifugu]
RCMLIESNLPKELWTYAVQTAAAVRSRCYNKRTGQTPYYMLTGKVPDLTRMKCFGSVCYVHKYNKRKLDSKNSPAYLIFY
PETGRVLKNRLVKFISKCVNECQTRTDQETEYILYRERGETTFPKNDVVTPITQEIKAEICDTDTTTGEGESVKNARYPK
RERRPPKYYNDYECKIXCVDDDDGQGLTVDYCYRVMSDAPRTLQXAMSSPKSNLWVKAMKDEMDSLKENETFTLTXLPEG
KHAVGGRWVYTVKENPDETKTYKARYVAKGYSRVAGVDYNEXFSPTASMTSVRSLMQLAVQHGLELHQMDVKTAYLHAPI
DXEVYMEQPDGLEVKSEMGEKLVCKLNRSLYGLKQSGRNWNKMLHDFLCENGYSXNPADHCVYSRQTASERVILLIWVDD
LVIAANDNQTVKNVKEMLGAKFRMKDLGELKHFLGIDFVQRGGEIKMSQKRYIXKILERFEMINCEPRFTPCENKLKFDN
EGQPVDQKEYREVVGSLLYVMICTRPDLSWIVSKVSQYLSGPKEQHWVTAKHVLRYLKGTVNQELCFKRSDVNLVCxKLV
AYSDADWAEDQNDRKSTTGYCFSLSETGPVISWKSRKQPTVALSTCEAEYMALAATTQESMYLVQLxNGMDCDSEYAPVT
VFEDNQGAIALSKNPVLRQRCKHVDIKYHFVRSALSDGKICIEYCPTVDMVADVLTKPVTRVRMDKFVFFMFGRK
>Hopscotch#LTR/Copia 43-4410 [Oryza sativa]
MASSSSKMAATNPFGGNTISEKLAKNNYALWKAQVLASVRGARLEGHLTGTTAAPAITISVPGEKEGDKATRAANPAYDE
WVATDQQILGLLLSTLSKDVLAQVATCGTAAAAWSMLEEMYTSMTRARFINTRIALSNTKKGDLSITEYVAKMRALGDDM
TAAGKVVDDEDLISYIIAGLDDTYEPVISSIVGKSEPMSFGEAFSQLLSFEQRNNLRHGGESSANLANRGRGTTGGNGGQ
RGRGGNNRGRGGNGGNNSANRGKGGRGNGGFNGGRQGGGVDTRPKCQLCYKRGHTVINCWYRYDEDFVPDEKYAGSAATS
YGIDTNWYVDTGATDHVTGELEKLIVRDRYKGHDQVHTASGAGMEISHIGHSIVKTPSRDIHLRNILHVPKANKNLVSAQ
RLVSDNSAFMELYSKYFNLKDLATKKLLLRGPCRGRLYALPSTPPHAHSTKEVYGVSKPSFERWHSRLGHPSSPIVEKVI
SKNNLPCLVESNKQSVCDACQKAKSHQLPYSISSSISSHPLELIYSDVWGPAPTSVGGKQYYVSFIDDFSKFTWIYLIKF
KSEVIQKFHEFQALVERLFNRKILAMQSDWGGEYEKLNSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEMGLALLAYS
SMPLKFWDEAFTSAVYLINRTPSRLLKYATPLERLFKQTPDYNILCVFGCACWPHLRPYNARKLQFRSKQCTFLGYSPLH
KGFKCLDPSTGRVYISRDVIFYENVFPFASLHPNAGAKLRSEILLLPSHLDIPIIPGVQQMSTTVANVPTNPANQISGDE
LSLQENLAANNAAPDGADAATAATKDPAADSPHTSDAASSSVLQRRVEATVESSCSPDRLHVELTPAHSPVAMQSPDATS
PTASSDSQEPSTSLDASVAGEVDTQQQQHQVISRPATRLQSGIIRKEKVYTDGTVKYRTTFLTVTGEPENLDDALKDNNW
KKAMDAEFMALQNNKTWHLVPPQKGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRI
ILSIAVSKGWCMRQLDVQNAFLHGVLEEEVYMKQPPGYEDSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGS
KADTSLFFYNKGDLIIFVLIYVDDIIVTSSRQEAVPALLQDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKYVNDL
LRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTHHWAAVKRI
LRYLKQCTRLGLKLSKSRSMLVSACSDADWAGSLDDRRSTGGFAVFLGDNLVSWSARKQATVSRSSTESEYKALANATAE
IMWVQTLLAELQVESPSMAKLWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTKALS
VRQLENFKYNLNLGKL
>Copia-135_AA#LTR/Copia 62-4041  [Aedes aegypti]
MDGGKFSVEKLRSGGYETWRFKVEMLLVRENLWKYVSEAAPNPLTDAWKEGDAKARATIALLVDDCQHPLIRDSKTAQST
WDNIENHHQKTTMTTKVSLLKKLCRAEYNENGDMEGHLFKMEELFSSLANAGQELDANLKVAMVLKSMPDSFDNLTTALE
TREDEDLTMDLVKGKLLDEAQKRMEKTHPSESILRVGAEKKIICHQCRKPGHMKRDCPMMKNEGSSTSGGRSGGQNGQPK
HKPKGKAAKTTPFAFTVSKNRKLMKTWIVDSGATAHMCCDRSFFQALKPSSGVTITLADGNETAVQGIGSGRLFCYDDSG
NQQEVILSDVFYVPDLESNLVSVGCLVNKGAEVTFGKSRGCVIQCGGVVAAVAQKVGGLYQLNTGAERSMNVVHHTKDCI
HSWHRKLGHRDPEAIQRVVREGLAKGVSIKKCDIYQTCECCAEGKIARKPFPRKTERQSTKVLDLIHTDICGPMNTVTPG
GSRYFLTMIDDHSRYTVVYFLKRKSDAADVIEEYVTMVRNRFGRNPVAVRSDQGGEYKAKRLGQFYRANGIVPQYTAGYS
PQQNGVAERKNRTLVEMARCMLLDAKLGHRYWAEAINAAVYLQNILPSRSVEKTSFELWYGKQPDYSNLHIFGSAAIVHV
PAEKRKKLDPKGKKLTFVGYADNHKAFRFIDVSTDKVTISRDAQFIEMEEPKTQNSFDHPGSLQVVEYEPEVIPFYPGPE
EEDDDNVDEDYEEDDNAGEDAEEGSNADEDDEINNVDETLVEEEHAATDSSMYETPNEDDGSETDTPVRRSSRSTKGVLP
QRYRETTGMVRKLTDEPRTYKEAMRGPEAELWKAAMDDEMKSLQENGTWQLTGLPPGRKAIGSKWIFKRKLDEDGNVVRY
KARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMLVKHADVKTAYLNGELKESIFMRQPPGYETEDRNAVCS
LQRSLYGLKQAGHVWNKKFDQVLKQMRFQQSKNDPCLYVRRNGAHYTYLVIYVDDMVIACNDEEEYEEIIKTLNRNFKVT
SLGDISHFLGIKIKRNEKGFSLNQQTYIQQVLERFGMDQAKPSKYPLNPGHIQQKEEQEKLANNHQYASLIGSLLYVAVN
TRPDIAVSVSILGRSVSAPTHADWNEAKRILRYLKLTMDHELVLGEDESDLEIYVDADWANDAKSRKSNSGYLFLFGGGP
IRWGSRKQTCVALSSTEAEFVALAESCQELQWIDRLLTDFSVKTIKPILIHEDNQSCIKQMESGRATNRSKHVDTKYHFV
YQLMADGVIRMQYCSTEHMIADMLTKPLTNVKLTRFREAAGVYPSRR
>Copia-126_AA#LTR/Copia 76-4266  [Aedes aegypti]
MNGGGNGLASSGLPAIERLVGRENWHTWKFALRTFLEVEELWEAVEPIPDEQGNIPAVNAAKDRKARGKIILGLDPTLYV
HVQDTKTASEAWKKLEKVFEDSGLTRKWGLLHKLITTNLDSCGSMEAYVTRMVGTAHQLNGVGLKIDEEWLGMLLLAGLP
ETYKPMVMALENSGAAITGDVVKTKLLQEVQQSSTTVDPAFVSKGPGRSKHSGSENFSTKGPKCRCCGRFGHIARFCPSK
DSTKKGVKKGDAFCTILSVAAMEEAADWYFDSGSCRHLTRNESLLSDVHKADGQIFAANKGVMKVVAEGSVALHPRCSES
SIDVNGVQLIPELAANLLSVSKIVDRGHTVIFRQKGREVINPEGKRIATGHRSNGLFKLDQQPQSALACQQMKSIDSWHK
RTGHLSIKGLKRLKNGLASGINFVESESGDCKTCAIGRQARLPFSKEGRRANEILELVHSDICGPMEEVSLGGSRYYITF
IDDKTRRMFVYFLRTKSEEEVVEAFKAFYSMAERQTGKKLKVLRTDNGKEFKNRGFENLLRSLGICHQTTVEYTPEQNGM
AERANRTIVEKARCMLHEANLPKTFWAEATATAVYIINRSPSKGIRTTPEEAWSGQKPDLSNLRIFGTTTMSHIPKQKRR
KWDPKAEECILIGFDEESKAYRLYNKKTKKVFKSRDVTFINEGRSAVCQDSQNKVQDNEADRGANRRQPTMVRLDFEDCE
TQEVLEVNRTNPPEQDDDSSSEDNYDSADDSVTIPSALPSRTVSNPPESHEASRRSGRERFIPGKYKQFHIKCKGLPASK
FSDGASGTSEDMTGEVNSDLADNPGYAQHSASPSYPNQRPVEDVQQGLMLSDRGRFPQGKYCRYNSEDSCTAYDSPQCIA
DDPVTPEEALSRDDAELWKSAMQEEYEAQMRNGTWTLTDLPAGRKAIRSKWVYKTKLDAEGRPARHKARLVIKGYSQRKG
VDYEETYSPVVRHSSLRYLFAIAARLNLDIDQMDAVTAFLQGELSEEIYMEQPAYFQDTQNRTKVCRLNKALYGLKQSSR
VWNHKLDSALKKFGLISTDYDPCVYYKIVGNKVLFVAIYVDDVLIFTNCRQWRKKLKDDLAKEFLMKDIGPAKHVLGMRI
TRSQGKISIDQEAYVESILDRFGMSKSNPVATPLNPNDKLTKEMQPIKDDEAERMKRVPYKEAVGCLMYLAQCTRPDICH
AVNVLCRFNENPGEKHWNAVKHLLRYLRGTSKFRLTYKKEADPTITGYSDADWATSSEDRKSITGFVFIAQGGAISWCCK
RQQTVALSTCEAEYMALSAAVQEALWWKRLRATFDIDEAVKINCDNQSTIAVAKNGGYYPRTKHIDIRHCFIRDAVQRGD
VDIVYISTDKQLADCLTKSLPKPKIELQRAAMGIQSQ
>Copia-123_BRa#LTR/Copia 60-4490 via tfasty with Copia-23_BRa, 88.2% SW:5335, 1 stopcodon. [Brassica rapa]
MSDTKSEAAEASQVVISKQGDTMKLSPYTLFSSDNPGSMITSVHLKGDNYNEWSLEMLNALRAKKKSGFVDGSLPQPEEG
DVNLESWLSVNSMIVGWIRTSIEPRVRSTVTFITNAHKLWENLKQRFAVGNKVRVHQLMEQLASCRQNGEPVIDYFGKLS
IKWEEMQTYRPSPPCTCTAARIYEKEREDERVHQFIMGLDESRFGNVVSSIIEADELPDIGKVYAKVIREEARLDSAKTR
EHTQDVVGFATRRDTNTDDQSARRDSREGSVSQGGRADFSSGRARDRVCSHCGKTGHDKNTCWQLIGYPEWMTERGGGRG
GRGSNRGGGRGFNSGRGRGITANIAHATTPHVSTVADLTPEQLKAITQIIQDKQSGSSEKLSGKVLGDIIIDTGASHHMT
GNLSLLVNVRKTLPCSVGFADGSMTMSASLGEMVVSDRLSLKEVLYVPDLNCSLISVSKLLKHMNCFALFTDAICLLQDR
STKTMIGAGEERDGVYYFKDVKAALVNRTDGKVVDHLLWHRRLGHPAFSVLSVLPMCSGVLNKDSPGHCDVCFRAKQTRD
PFPDSLNKAEVCFGLIHVDVWGPYRVPASSGAVYFLTIVDDFSRATWTYLLLAKSEVGKVLQNFCAYTERQFNKRVKEVR
SDNGSEFMCLSSFFREKGIIHQTSCVATPQQNGRVERKHRHILNVARALLFQAGLPVKFWGEAISTATHLINLTPSKILH
GLTPHEVLFGRKPSYEQLRVFGSSCYVHRNARDKDKFGARSRHCVFVGYPFGKKGWKVYDMERNEFFVSRDVVFQEDKFP
MAESDMAQSIEQVSLEPFVEEEEGLITSVTRNRGSEVVEVPVGEESVVVTEPVEGDNSDKTTVSDEAALETATPVTETEE
TVPAVPEFGRGHREKQVPAKFNDYMLYNARMLQCPDPHHTLIAASTESSTVQGTPYPLDNFVTDMNFSPAHQAFLAAVTK
ETEPRNFREAVQHEIWRNSMQKEITAFEVNKTFSIVDLPPGKTAIGNMWIYKYKYNADGTIERPKSRLVALGNRQVEGED
YDETFAPVAKMTTIRGLLRVIAGKGWIVHQMDVHNAFLHGELHEEVYMKLPLGFHHSDPRKVCRLHKAIYGLKQAPRCWF
AKLTNALKKYGFVHSYSDYSLFTYEKNNVELKVLIYVDDLIVCGNNMEFLTKFKDYLGRCFHMKDLGKLKYFLGIEVGRG
KEGFMLTQRKYALDIIQEAGLLGAKPVATPMEQRHQLGRDKSAFLREAGKYRRLVGRLIYLSVTRTDITYSVHILSQFMQ
SPRENQWEAALRVVRYLKGTVGQGILLSSSSDFNISVYCDADWNSCPTSRRSVSSFVTLVGDSPISWKTEKQDFVSHSSA
EAEYRSMSEATREIKWLVRLAKDLGFAPKGAVKLYCDSKSAMYIAANPVFHERTKHIESACHQVRDAMKAGLITAVHVRT
NExLADVLTKTLGRVQFEYLLFKLGVRNLHTSNLRGS
>Copia-132_SB#LTR/Copia 69-4734 via tfasty with SBCopia1, 4 frameshifts and 6 stopcodons. [Sorghum bicolor]
ERAQGDALERQTSALRERLRAETFRDDDSVADDDTRSISSEAATIVNLHSQAAALQNIKNLIPIVLDLQASNYSKWRGYI
LLVLGWFALKDHVLNDATRLHDAAWSHMDCVVVSWIFNTISPDLLDVVHERDGISTRAAWLGHKQHFFNNRESCAMLLDA
EFRTTCxGTLSVDDFCRKMKTMTDSLADLGEPVxDCTLVLNVLRGLNERFQFMLQLVTRQRPFPSFTDVHADLRLAELNM
ATPSAPPSALVASSSAKPHASSAPSAPAVPCPHQATGGQLGGNDNGRGRRRRGRRGQGGSQGGPKGGHPSGQQSADGQQW
PSIFNPWTGSIHMWPGSNPGGPRGPPPRVAAPPSPKQAPMAGAPPGNFPPPSAYYxAPQQASPYSWSPTSWTYESLANAF
STVALTPPPGTSDWVIDSGAFSHIASNPGMVSASPFSSFPSSIVFGNGATLPVVGTGYSILPEPFRFNNVLVALDIIKNL
LSVRKFTTDNSVLVEFDPLGVSMKDLDSKNTLLRCDSSGPLYTLxLPSSSSSPCALVATPSSTTWHRRLAHPGKAALQSL
VQSSSIICSKFNDAPLCHACQLGRHVRLPFNNSLSRALKNFDLVHCDMWTSPVTSVSSFKYYLAILDDCSHFHWSFPLRL
KSDTFSTISNFFAHVHTQFGYTNKTVQCDNGREFGNSASRAFFLAHGVTLRMSCPYTSQQNGKAERMIRTTNNVTRTLLF
QASMPPSYxADALATATLLLNRLPTKTLNMSTPHFALHGTLPSYHDLRAFGCTCYPNLTATAAHKLAPCSTLCVFLGHRS
TLCVFLGYSPDHKGYWCLDLATHRVIISRHVVFDETTFPFSLRRPMPPSQELDFLTNDDPLPVLPFPAGTPGPNGPSMAG
HGHPAPHSPPAGFPAPQPRIAPVPSSHSHGMSTATPASPPDHQAPRTPPSQSPPSVPTASPAPAASPPAPSASTSVAPTP
PVAHLAPRFIKPPVVHVYSRRPHTQPSPELAAEGPLRRSSIVPSPLRYVKHGPPVPPTAVPIPPVANSLSMATRGKSGYR
QPRLALHTEALAPVSRSCRDALANPHWHRAMEEHAALLDNHAWDLVPRPNKANVVTGKWIFKHKFHADGSLERYKARWVL
HGFTQRPGVDYDETFSPVVKPATVRTVITLAHTWNWPIHQLDVKNAQPTGFADPAFLDHVCKLSKSLYGQKQVPRAWYSR
FAAYLFTLGFTEAMSDTSLFIYHRGTETVYLLLYVDDIVLTASSQQLLLRVITALKKEFVMKDLGPLHHFLGVAVQRHKD
TLTLSQWQYTLDILDRHGMTGCNPCSTPVDTCAKVPADAGSPVADPTAYRSLAGALQYVTFIRPDIAYAVQQICLHMHDP
QxAHLTAAKRILRYLQGTLSYGLVIPRSNPSQLVVYTGADWDGCPDTRRSTSGYAVFLGGSLISWSSKQQPTVSRSSAEA
EYRAVANGVAEASWLHQLLQELQHPLQTVSLVYCDNVRAVYLSTNPVQHQHTKHMEIDLHFVREKVAIGPVRVLHVPTTS
HYADVFTMGLPSSVFSEFRSSLNVRSIDVPTSGGGG
>Copia-134_SB#LTR/Copia 40-4472 via tfasty with Copia-65_SB, 87.6% SW:5546, 1 frameshift and 3 stopcodons. [Sorghum bicolor]
MASSFVPPASYALIGCPVTEKLGKNNFPLWRAQVLSAIRGAEVEHLLDATTAAMSEKFIPKAKETPDELILNPDYSKWVA
KDQQVFNYLISSVSRDVQVQIASCTTAAEIWKTILDMNASQSSRRVINTRMAMATAQKGSSTIAEFFSKMKALADDMAAA
GKKLDDEEIIFYILAGLDRDFDSVVSQVSGRDGPVTLGQVYTxLVSWEQRLLASNGENSSSSSANTATRGGRGGFKRGGG
GRGHGRGRNNGGNNGGRYRQKNTPDEEMVCQLCGLEGHTVIRCFKRFDATFQGAAKEKRQVSSASVGYGIDTNWYTDTGA
TDHITGDQERLTVRDKYHGNDQVHTASDAGMRISQIGQSFVRTPERNLILDNVLYVPQANKNLASVHRLTTDNNTFIEYH
PTYFLIKDQVTKRILHRGECEKGLYPLKSTPSKSPSNKTSLGATKLPTSRWHSRLGHPSSSVVSQVLSQNQIPFVSESNK
GQVCDACLKGKSHQLPYPVSSSESSSPLELIFSDVWGPAPTSVGRYDYYVSFIDDFSKFTWIYLLKHKSEVFQKFHNFQS
MVERQFNKKILAIQTDWGGEYHxLNSFFQRIGISHHVSCLYAHQQNGSAERKHRHIVEVGLSLLAHASMLLKFWDEAFLT
AIYLINRLPSRVIHGQTPIFRLYQQTPEYTNLRTFGCACWPNLRPYNDRKLQFCSKQCVFLGYSNMHKGFKCLDVSSGRV
YISRDVVFDETVYPFSSLHPNAGARLRSEILLLPPYHRNSVGSGDGNSSDRASNDSLRTNVSSECAGSVENVVQDGETPV
TNGHEITRVGSFPFSARTGTDPGLDPPAWSDASAGVSALDLAPAHGGGVPPSPTRASSSPRAPSSVAASPQRHPAGGQGG
HHAGASTSTQVPPGSSVSPPSATTTHDAPSGSSLPQPGSSAPIHPAAPSAPPVVPSRPVTRLQQGIRKPKVYTDGTIRYG
NLAATADESPTLKQALSDKNWKRAMDVEFEALIKNNTWHLVPPQKGKNVIDSKWVYKIKRRSDGQVERYKARLVAKGFKQ
RYGIDYEDTFSPVVKAATIRLVLFLAVSKGWSIRQLDVTNAFLHGFLEEEIYMKQPPCYEDRTKPHYLCNLNKALYGLKQ
APRAWYHRLCNKLLSLGFVPSKADTSLFFYRKGNHVIFMLVYVDDIIVASSSQEAVKVLLRELEKEFAIKDLGNLHYFLG
IQVQRKNGELLMSQEHYASEILQRVNMQLCKPVKTPLCVNEKLSITSGARLGVKDSTRYRSIVGALQYLTLTRPDLSFAV
NKVCQFLHSPTTVHWEAVKRILRYVQGTISLGVKIKKSTSMIVSAFSDADWAGCPDDRRSTGGFAVFVGGNLISWCARKx
ATVSRSSTEAEYKSLANATAEVMWIQKLLEELGIPHPRAARLWCDNIGATYLSANPVFHARTKHIEIDYHFVSERVADKL
LDIRFISTADQLADGFTKALPEKSVVKFRNNLNLSSTL
>Copia-133_AA#LTR/Copia 260-3851 via tfasty with Copia-101_AA, 4 frameshifts and 1 stopcodon. Copia-98_AA similar with a large internal deletion. [Aedes aegypti]
MSEKYLFSRLSDQNYPVWKKRMEMLLKREDLWSVVSEAKPEPATDVWSKRDQKALATIVLYVEDSQLNLVRDAVTAADVW
KVLRDFHEKATMTSRVALLRRICSLNMAEGGDIEKHLYDLEELFDRLATAGQALETPLKIAMIYRSLPESYGGLITALES
RPDADQTLQLVKQKLLDEHQRRVERSGEVSEKAMKSRSKEKEKICYHCRKPGHFRRDCRLLKSQQKSDTEHKVKPSGSKA
KKGSQCSVVNEEGxVVATAELCGNLYILKTAADARMSKEVRHLPDCQHTWHRRFGHRDPAVLDRIQEEKLCEGFSMHDCG
IRHVCEHCLAGKLSRIPFPKQAQNRAARILDVVHTDVCGPMKNVTPGGCRYLMTLIDGYSRYTVVCLLRQKSDAAGCIKR
YVAHVKTRFGRAPGAIRSDGGGEYANKELKEFYEREGIQAQFTTAYSPQQNGVAERKNRSLQEMATCMLLDAGLPKKYWG
EAIMTAGYLQNRLPSRSVDSTPFEKWFGRKPSLKNLRVFGSPAYVHVPDVKRSKFDHKARKLLFVGYCDDRKAFRFLNPE
NDEITISRDARFIELGDGSLDQRDPVSDGSEQFVELDVTAVKSQQRRIDSAELESQEDEATLQEESCSDYYDPDEEEGAV
GGERRCQKRSTRGVLPKRFEDYEVDAAIAVEGEPDTYEEAVNSSEQDLWKAAMAEEYDALMRNDTWSLVQLPAGRVPIGC
KWIYKKKEDSSGNVSRFKARLVAQGFSQRYGVVYDAVFAPVASQATLRILLTVAGYKKMAVRHLDVKSAYLHGKLQDEIY
MQQPKGFVVPGKEKLVCRLKRSLCGLKRAARIWNTTISELLKGLGFDQSRSDPCLFIKRSPGGGFVYLMLHVDDMIVAGM
TEKEIDAVEFELRKKITLSSLGEIGHFLGIRITKDKNGFYCLDQENYIKKVASRFGLEHAKGSSVPIDVGYFRSREGSKE
LPDNERYRSLAGALLYVAVNTRPDVAASVSLLCRRISQPTEVDWNELKRVVKYLMKTSNSKLRLCAERGKPLRLSGYCDA
DWGGDTADRKSNTGYLFLLGEASVSWASRKQSSVSLSSMEAEYIAVSEACKELVWLRRMLDEMGAEQCGPTVLFEDNRSC
MEFVEMERVSRRSKHIDTRMFYTKDMCEKGLVELRFCPSENMTADLLTKPLGPVKQKKFAEAMGLTEVESWAGRREKY
>Kopi2_pol#LTR/Copia 619-3959 via tfasty with TNT1, 7 frameshifts and 8 stopcodons. [Takifugu]
MKVRGRDSGNMKLSCFNCGQKGHKAVECTSAKGEHREQRLDVVFARVPRTRRRKQAVDEEDHTFAFKVDEVDEVLVSGVK
EKGLMVDTGATSHIRDIAQFKDFNSFEPHKHVLELADGERISGIALKKGTAKVRLRDNKGQVVETTLIGALYVPSFPQDI
FSVKAATSQGATVIFKGQNRLVHRNGVTFDIQVYDRLFYLSTVTDDVDQCHGCYDDQTWXEILGHCNYEDVLKLESVTEG
MKIKGKTEMSKLKCEVCTQXKFARSRNREADEKAKVALELXHTDLAGPIEPIAXDGFXYILAFXDDYXGAIFTHFLKAKS
DYSERYREVHADVAPYGKIKCIRSDDGTEFTSREFQSLLGKNAIRHETSAPYSPRQNGTAERSXRTLLDMARCMLIKSSL
PKMLWTYAVQTAAVIRNRCYNRRVGQTSYYMLTGXKPDLSKMKIFGSVCYAYKQNKKKFDSRCGKRGFCLxQExPCISSF
LSRLGESDQXXVEVSHKECHxMSHXDRSVNExRCCAxGERxNPPTKNxDNKINPTGSENGSVCVTQIPTQVKGxVLRAGV
XHRXRGDLQYFRDYEYGIKRDDDHALTSIDYCYRVACGVPQTLXEAMSSPQLERWGKAMQEEMNSLRENNTFTLTTLPEG
KXTVGGRWVYTVKENPVETTYKARYVAKGYSQVAGIDYNETXSPTADMTSVRSLMHIAAQYGLELHQMDVKTAYLHAPID
CEIYMYMEQPEGFEVKSETGEKLVCKPNKSLYGLKQSGRNWNKKCYDDFLSQNDFIQNPADHCVYSKQTGNEKIILVIWV
DLIIAASDNQTLKCGKKMLEXKFKMKXLGKLEHFLGIDFAQGXGEIKMNQKRCIQTKILERFDMTHCKXXSTPCENKLKX
ENEGEPVDPKXYREMVGSLIYVMTCTRPDPGFIVSKLSQHLSEPKKRHWVAAKHVLRVFKRNCGTKSCYRRNDVNLNLFA
FSDADWAADQNDRRSTSGYCFSLSETGPVISWKSKKQSVALSTCEAEYMALAATTQKSLYLVQLLNTMDDQCDYTPVTIY
EDNHGAIALSKNPVCRQRCKHVDIKYHFVWSALVDGKITIEYCPTADMVADILTKPVTKAMLDRFMCFIFGMKG
>SC-8#LTR/Copia 41-4405 [Oryza sativa]
MEGVPAAGANASRSPQHRGRRHSLSPTPRRGRGRGAAVREVVVQRTVREVGGAAAFPTLTRTNYTEWSLLMKVMLQARGL
WDAVEHGECDEQEDRMAMEAILRAVPSEMISLLATKDSAKDAWDAIKVMHVGVDRVRKAKAQQLRREYESISFHDGESID
DFALRLTSLVSQLGTLGERIEEQNVIEKFLRVVPERFSQIAVSIETLLDLSTLTIEDVTRRLKVAEERQPAPTSTTTPAG
GQLLLTEEQWLARQKERQKGEQSSKQSQGGARQRPRSHRKKRGFGGGVGGEKGNTNRDTAPNRCHNCGRLGHWAKDCRQP
KKEAAHLAQGDDDDDVLLLSRACELEDDDATLLMAHACELNDGPIIAPSPVSLVEQRVQVSLGATDAEDKEEAWYLDTGA
TNHMTGRGDVFAELDRSVTGTVKFGDSSIVDIKGAGNVIFTGKNGEHKVLSGVYYIPRLKSSIISIGQLDESETRVLVED
GIMRIWDRRRRLLAKIKRGRSRLYVLRLEVARPICLATRHDDVAWRWYERFGHIHFGSLEKMGRQELVRGLPRLEHVEQL
CDTCVITKHRRAAFPKAAKYRAQEPLDLVHGDICGPITPATPGGRRYFLLLVDDATRYMWVALLAAKSNAPDAIKKIQMA
AETHYGRKLCVFRTDNGGEFTSLEFAAYCTDEGIQRHFSAPYAPQQNGVVERRNQTVVSMARALLKQRGMPAEFWGEAVS
TAVFLLNCAPTKSLTGKTPYEAWHGKKPMVSFLRTFGCLAYVKELNDVRKLDDRSTPGVFIGYEEGVKAYRVLDPRTRRV
RLARDVIFDESRGWDWTAASGTDARLSSDFAIEYHVEKTTGHPIPSVGGGVVTPSASPTPLQETSPATPATPAPSPSVAP
TEFVSPPSHDEERIDAAHSNTPVRYRTVDNLIGENAPAPGIAQRELEEASLLLAGPGEPCSFAEAEGDDAWRAAMREEMD
AVNRNGIWELVDLPHGHRPIGLKWVYKLKKNEAGKVVKHKARLVARGFVQQPGIDFDEVFAPVARMESIRLLLAVAAQKG
WHVHHMDVKSAFLNGDLAEEVYVKQPPGFVVAGEEDKVLRLRKALYGLRQAPRAWNAKLDCTLKELGFDQSKHEHAMYRR
NNGGSALLVGVYVDDLVITGPSTRAIEQFKEEMKAKFQMSDLGLLSFYLGIEVKQGDDGISLNQGRYAQRIVESAGLKDC
NPCATPMEERLKLSRDSTAPPVDATKYRRLVGSLRYLVHTRPDLAFAVGFVSRFMERPTEEHMVAVKRILRYVAGTMEYG
LHYKREKEEQRLIGYSDSDLAGDIDTRRSTSGMLFFLDSSLVSWQSIKQRVVALSSCEAEYVAATNAATQGIWLARLLGE
LLGKQPKAIELKVDSKSALALAKNPVFHERSKHIDLRYHFIRDCLEEGSINASFITTMDQLADILTKALGRVKFQELRAK
IGMVQINQNLMCKD
>SC-7#LTR/Copia 649-4189 Wised via estwise with OSR3/Copia protein (1 frameshift) N term extended wth ORF [Oryza sativa]
MGEIQGIEQILEKLAEEVEEIRGRIQKVKEKTTVLGNFVNLAHPMQVPNSTWILDPGASRHVTGMSSEFTSYTPFQSSFK
ETIQTADGTLRHVRGVGTVKCTPSITLSSILYAPSFPVNLVSVSSLVDHMDCRITIDRENCLIEERRTGRKLGTGVRHNG
LWYLDRRGTDKALCSALLASTSEEEAKLILKHCQLGHMSFDTMSKVFPDEMSKVDKSKLMCDACEYGKHTRTTYISRGLR
SILPFVLVHSDVWTSPIASVSGAKYFVTFIDCHSRMTWIYLMRHKSEVLKCFKNFYAWVRNQLNTCVKVIRSDNGGEYVN
DEFRSFLSAEGIVHQTSCADTPPQNGVAERKNRHILEVTRSLMYTMNVPKFLWSEAVMTATYLINRMPSRILGMKTPYEM
VFGKNEFIVPPKVFGCTCFVRDHRPSVGKLDPRAVKCIFIGYSSGQKGYKCWSPSERRTFVSMDVTFRESVPFYGERTDL
SSLFVNLDNPIIDEDGQEGENGSSGTEEDTQSRSMKFVVGSIPYPVSEPIHEKNWRRPREEENLQVYTRRKTRSLEAQTM
GQHESPMDGMEQQQSSIVAEVGDKPSDQCDTIQISSDTEGEEFETGGEETNLPIAIRKGVRSNAGKPPQRYGFEAQGVND
DENNIANYVSYASLSSTYKAFVTSLNSVEIPNDWREAKQDPRWHQAMLEELEALEKNKTWDLVPFPKGKKVVNCKWVYTV
KQNPDGNVERYKARLVAKGYSQTYGIDYDETFAPVAKMSTVRTLISCAANFDWPLHQLDVKNAFLHGDLQKEVYMEIPPG
FATSQTEGKVLRLKKSLYGLKQSPRAWFDRFRRAMCGMGYKQCNGDHTVFYRHNRGLKTILVVYVDDMIITGDDCLEISR
LKQNLSKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLSDTGMLGCRPASTPIEQNHKLCAESGDPVNKERYQR
LVGRXYICHTRPDITYAVSVVSRYMHDPRSGHMDVVYRILRYLKASPGKGIWFKKNGHLDVEGYCDADWGSCLDDRRSTS
GYCVFIGGNLVSWRSKKQSVVSRSTAEAEYRSMSMSLSELLWLKNLLAELKLSTSTSMKLWCDNKSAINIANNPVQHDRT
KHVEIDRFFIKERMDEGTLNLGFVNSGEQVADSLTKALGARECTSSCSKMGMIDIYRPS
>SHACOP2_MT#LTR/Copia 25-4489 via tfasty with HOPSCOTCH_ZM, 4 frameshifts and 2 stopcodons  [Medicago truncatula]
MVSQPPSLPPETPIPTAIPINSIPLDSFLEDNDSDRSKFAFALKISEKLTEKNFLLWRQQVAPYINAHNLDGFIVAPIVP
PCFLNAQDRATGTLNPAFRKWRLTDQMLLSWLQYTLSSAILARFIGCSHAYELWDKLVAYFHKQMRAKARQLSVELRSTS
LANLTVQDYLLRIRDLVDNLASIGDPVPVNQHLDVILEGLPQDFSPVISVVESKFDVIDVDEVESLLLAHETRLDKFKKK
VLEDVASINLTSSSASQASSPSESSQSQASVNVTTGSDHSTFNPNFTPNFGSNRGRGGRSGRGRGRGGRLSNVQCQVCFR
FGHPASTCWHRFNQQFQPQIPPNFQGFQGFNNAPIDPYHLASPSMMPYGAPYGGYNQHSLGYGSFNNWPRPSAQQRPPSV
QFSQPSAMMINAPSTSGSSTWFPDSAASFHVTGDAINIQEQSFFEGPDQLFVGNGQGVPIHSYGSSVFPSPLKPHKTLSL
NKLLNVPDITKNLLSVSQFAKDNTVFFEFHADYCVVKSQDTKEVLLRGSVGPDGLYTFPSLSMDTAKCSSPSVFFTSPDS
TINTIFPSCNNQMPSKSHNLWHQRLGHPNNHTLKLVLQHCNISTINKEKDISTFCNACCIGKAHRLHSPTSHTIYTHPLQ
LVFSDLWGPSPTVSSLGYHYYITFVDAFSRFTWIYLLKNKSDALTVFMQFKSMVELQLGHSIKSIQTDWGGEGEFRSFTQ
YLTGLGITHRLICPHTHHQNGVIERKHRHIVDLGLTLLSHASLPLTYWDHAFLAVVYLTNRLPTASLQFQIPFQTLFHKM
LDYHFLKVFGCSCFPLLRPYNSHKFDFRSHECLFLGYSTTHKGYKCMSPSGRIFISKDVLFNESKFPYLSLFQNYTYDPL
HPIQDVSLSSLPIHPSDLPSNFHNQSTSSSPTSQMASPSPPNSLVPTTTSATNIEPQSFTASQHSTHTTAPLPVNSHPMQ
TRSKSGIVLPRLNPNIFLTYTEPKNVKQALLDPKxRAAMQDEFDALQKNSTWSLVPLPPNRKAIGCTWVFRVKENSDGTL
NKFKARLVAKGFHQVQGFDFTETFSPVIKPITIRLILTLALSYKWPIQQLDVNNAFLNGILEEEVYMQQPPGFEHSDSTL
VCKLHKALYGLKQAPRQWFERLTTALIQFGFQASKCDPSLFTYAKQKQVVYLLVYVDDIIMTGSSSSLVSALVKQLDSVF
SLKQLGLLEYFLGIEVKHLPNNSLLLTQSKYINDLLAKTHMLECNSINTPMVSSCKLSKIGSDTFSESLSYRSVVGSLQY
ATITRPEIAYSVNKVCQFMSNPLESHWVAVKRILRYLKGIFTFGLELHPAPIHKPLSLHVFCDADxAADPDDRRSTFGAA
IFFGPNLISWWSKKQPVVARSSTEAEYRALAQATADALWVQTLLQELTVPFNNLTVYCDNPILHTRTKHMEIDLFFVREK
IIAKQLSIVHIPGTDQWADILTKPVSTSKFLLMRSKLNVISHPTEFEGG
>SHACOP8_MT#LTR/Copia 54-4136  [Medicago truncatula]
MASTNNPSATYSNVKVPLFEGVNYDFWAVKMETLFTSLDVLEYVKNGYEEPTPTEAEISKEKAEESSKQPEELKKKITDA
GVLGMIQRGVSLSIFLRIRRAKTSKEAWSILQQEFEGDSKVRTVKLQSLKRDYENERMKENENLNEYFNRLSELVNQMKS
HGDTIEDRRIVDKILISLTARFDPMVGVIEETKDLSTLTIQGLMGSLRSYEQRMLRHSEKSIESAFQSKLNIQPNNGENK
PQIQTRGESSRGGRFGRGRGRGRNSRGRSGRSANGGRWNEASNKWCKICNSGTHDEKDCWYKGKPQCHNCKRFGHLQKDC
RLAKQQHASYAEGESDEGNLFYACQKALHEEEKNVWYLDSGCSNHMTGQKGAFINIDSSCGSKVKLGNGEHVEVKGKGSI
GVTTKQGSRVIHDTLYVPELDENLLSVGQLLEHGYSLNFENRECRIFDSERRSVAIVKMTSNRSFPLSFDYEKNVSMMAR
EENDSCLWHRRLGHLNYESLKLLYQKKMVYGLPRIEEKSGVCEGCVFGKHHRKPFPKEGAWRAKQVLELVHTDVCGPMNT
LSHGKNRYFILFIDDFTRMTWVYFMRQKSEAFVIFKKFKALVEKQSGRFIKMLRSDQGKEYTSNEFHKFCEDEGVERQLT
VGYTPQQNGVSERKNQTVMEMAKSMLLEKGLPKTFWPEAVNTAVYLMNRCPTKAVWKKTPFEAWSGRTPSVNHLKIFGCV
CYAQIPKQKRTKLEETSEKCVFIGYSSMSKGYRLYNLKTNKVIISRDVVFDENASWNWEEDKMKEKTVPAIILQQQNSAA
ENEQPTPCTPSSSSSPSSPNSSSSTPSSTPIKLKDLSDIYARCNYCVVEPENFDEAIKEDAWRNAMQEEINAIEKNKTWQ
LVERPNDKEAIGVKWVYKLKHNPDGSIQRAKARLVVKGYAQQPGIDYSETFAPVARLDTVRTVIALAAQREWNLYQLDVK
SAFLNGELKEEVYVQQPQGFVTKGQEEKVYKLKKALYGLKQAPRAWYSEIDSYFIQQGFERSQSEHTLYVKRQGKDDIFL
VALYVDDLVYTGNNKKMVENFKIEMMKKYEMSDLGLLHHFLGIEVYQDEYGVFICQKRYAENILKKFGMNGCKPADIPLV
VNGKLKKEDGGRLVDANMYRSLVGSLFYLTATRPDLIFAASLLSRFMSKPSHLHLGAAKGVLRYIMGTMEHGIRFQNNSK
LEVKGYCDSDWAGSVDDMKSTSGYVFSLGSGVISWCSKKQDTVAQSSAEAEYLAAGLATQQSLWLRRILEDIGEKQEESL
LLHCDNKSAIAMAKNPVFHSRTRHINIKHHFIRSVIEDGDVQLVFCNSQEQLANIFTKALPRGRFQQLREAMGVKEQHIK
G
>SHACOP4_MT#LTR/Copia 81-4022  [Medicago truncatula]
MASNNITLPAPPVFTGKKYEIWSVKMKTHLRAYDLWEVVETAAEPPPLQENPTVAQMRYHSEQVAKRAKALTILHSAVND
DVFMRISHLETAKQVWEKLEEEFFGNERTKQMQVLNLKREFEALKMNEAENIIDFMTKVMKVVNQIRLLGEQFLDSRIVE
KVLVVLPERFESKISALEESKDLSKITLTELINALQAQEQRRLLRQEEASETALQVKHKGKSIATKGEKKFVGEHSGKDT
KKKERFPKCGICKRTSHKESDCWYKGKTPPPFQCRYCNKTGHIERFCRLKQQHQNQQNHTSQKANVTEIEDSEELLFMAN
TTRSSEDGDTWFIDSGCTQHMTSKPELFSEIKPAAGSVKIGNGQKVAITGRGTVKIHTATGIKYISDVLLVPELDQNLLS
VGQMIEKGYCLLFKEGSCVVTDVNGHELFEVNMRKRSFPINWNLVSEHECNMSKAELDSKLWHKRFGHYNLKSIQFAQKQ
ELVKDLPNIQTFSEVCEGCQLGKQHRLPFPSSATWRASDKLELVHSDVCGPMNTSSLNGSKYFILFIDDFTRMTWVYFLK
QKSEVFSVFKKFKIFVENQSGCLLKKLRTDNGKEYTSAEFNKFCDDLGVERQLTVSYSPQQNGVSERKNRSVLEMARCMI
FEKKLPKSFWAEAINTAVYLQNRLPTKAVEGMTPIEAWGGFKPSIKHLRVFGSLCYTHIPDVKRSKLDEKAEKGILIGYS
SKSKGYKVYGIDSNKIFINRDVKVDEDAYWNWETSQVDRGSTLSSLEDANEDQDEEVDDDFAVRGTRPLSEIYQRCNSAV
LEPTSFEDASKVDEWYQAMKEEMDNIEKNKTWQLVDKPRDKNVIGVKWVYRVKMNPDGSINKYKARLVVKGYVQQSGIDY
TETFAPVARMDTIRILVALAAQMKWKIWHLDVKSAFLNGNLDEEIYVAQPAGFLVKGREDKVYKLNKALYGLKQAPRAWY
SKIDSHFLNQGFKRSENDATLYVRRLLDGGSLIVSLYVDDLLVTSNNQQEVQQLMEEMKNQFEMSSLGEMNYFLGLEVHQ
SENGIFLNQEKYAREVLKKFKMESCKSAPTPLVWNLKLSKEDEAEKIDASRYRSLIGSLLYLTSSRPDLMYAASLLSRFM
QNPTKTHFAAAKRVLRYVKGTTQFGIWYKPSENESLLGYVDSDWAGNIDDMKSTTGYAFSLGSGMFSWNSRKQEIVAQST
AEAEYVAAAAAANQAIWLRKILDDLGIQQLEATVLYCDSKSAIAIAENPVQHGKTKHIQVKYHAIREAVKNQEIKLIHCC
SDSQVSDILTKSLPRAKFEKFRELLGVSIQNLKE
>SC-5#LTR/Copia 461-3646 via tfasty with OSR3_484-4902, 1 stopcodon [Oryza sativa]
GRRIGTGVRRNGLWYINQEEMGLAVVVGDTEKEIILLHCQLGHPSFESLSKLYPDLFTKVDKSRLVCDACEFGKHTRSTY
AGIGLRSCEPFILIHSDVWGPCPVTSVSGFKWFVTFIDCYTRMTWIYMLRHKNEVLRCFQDFHKLVTNQFDARVRIIRTD
NGTEYINSEFVSYVSDHGIIHQTTCPGAPPQNGVAERKNRHLLEVARSLMFQMNVPKYLWSEAVMTAAYLINRMPSRILG
MKSPAELLLGKREFKVPPKVFGCVCFVRDHRPFVGKLDPHAVKCVFVGYASNQKGYKCWDPIGKRLFVSMDVTFREFEPY
YRSRGDLDQFLEEFSTVIEIDSREGEIVEVDAHKQGDEDVVIGSIPSFVGDTIEKVVDIGEKVVDISCDKDEGVVVGTIP
CPLERVEVQQTEMRVYQRRNKNQVDKVTGKEQVHQRSQIQNQGERSGEPMQEQDKESQQLQQFEYAVPDSSSSLSPTSSS
LLETSGNISPTFEQVELPLAQRRETRSNAGRPPIRLGFEHLSSRHDIANYISYSHISPAYKAFIASLQIVPIPKDxRCAK
QDPRWKDAMKEELRALEKNKTWELVKLPMGKRAVGCKWVFTVKQTPEGKVDRYKARLVAKGYSQTYGIDYDETFAPVAKM
STVRILISCAVNFGWPLHQLDVKNAFLHGDLQEEVYMEIPPGFGNSQTVGKVCRLKKSLYGLKQSPRAWFDRFRRALCNM
GYSQCNGDHTVFYRHRGAHITILAVYVDDIVITGDDVEEIKCLKQRLGEAFEVKDLGPLRYFLGIEVARSSKGIVLSQRK
YVLNLLKETGMLGCRTSATPIDRNHQLSAQSGDPVDRETYQRLVGRLIYLCHTRPDISYAVSVVSRYMHDPRTTHLEVVH
RILRYLKGTPGKGLWFRKNQHLDVEGYCDADWASSVDDRRSTSGYCVFVGGNVVCWRSKKQAVVARSTAEAEYRAMALSL
SEMLWVKNLLLELRLFRNNTVVLHCDNKSAINIANNPVQHDRTKHIEIDRFFIKEKIDSGALRLQYIKSSEQLADCLTKG
LGPSESESMCNKMGMIDIFCPS
>OSTONOR1#LTR/Copia 1071-5300 [Oryza sativa]
MHNILMLILFSPHMIISGGYSLMGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIEPADLVRGENESDADWQ
KRQRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERY
HGGGVRDHILRMSNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQEEERIKESNGGS
INYVKDKKKNHKSPTSKGKQSQHLPQQQQFAVEKDQCLHCKKTGHYKKDCPDFLKMIMAKKGENIITFVNESHYVGYSRS
TWWIDSGATIHACNCLKAFRSTRTTQRRESTIRVANGVEEKVEAVGDLPLELANGFILLLRDVFYVPSLQRNLISVSKLD
FDGYDCRFGSGKCELWHNNACIGLAVLRDELYLLSLSENVNVVSSLTKENKKRKRTPDVSSKLWHCRLGHISRGRIERLV
KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKRSAGILEIIHTDICGPFPVKSVDGYDSFITFTDDYSRYGYIYPIKER
SEALDKFKIFKAEVENQHDIKIKVVRSDRGGEYYGRHTPYGQVPGPFARFLLENGIVAQYSTPGEPQQNGVAERRNRTLM
DMVRSMMSYSTLPLGLWMEALKTAIHILNRVPSKSVPKTPYELWTGRVPSLTHLRVWGSPAEAKVFNPNIGKLDPKTVSC
HFIGYPERSKGYRFYCPNSYTKFVETRHAVFLEDEMIRGSSVVREIDLEERRVSVPAPSTQEPFFSLPADVVPAMPVIEV
PAPVVTPPVATMNESEEPVIQDSTEMVATPEEELQQPQIDNVPVQETHQEPQVQDVPNVQAPRRSERVRRSAIRDDYKVY
NIEESHMEDDPTSYEEAMRSARSSEWLEAMKDEMESMKLNDVWDLEEIPKGAKTVGCKWVYKTKYDSRGNIEKFKARLVA
KGFTQREGIDYNETFSPVSCKDSFRIIMALVAHYDLELHQMDVKTAFLNGDLEEKVYMAQPKGFVMKGNENMGCRLKRSI
YGLKQASRQWYLKFDGTIKKFGFQENVEDNCIYSKFKNGRFIFLILYVDDILLASSDVSLLQETKKFLSSNFDMKDLGEA
SYVLGIEIHRDRTKYALGLSQKTYIEKVLKKFNMYRCSATPAPIMKGEKYGASQCPRNQYELNEMKTKPYASAVGSLQYA
QVCTRPDLAFVTGLLGRFQSNPGLEHWKLVKKVLRYLQGTKGLMLSYRRSESLQIVGYSDSDFAKDNTKSTSGYVFTLAG
GAISWKSSKQTITAGSTMYAEFIACYEATGQVNWLKKFIPGLKVVDSIEKPLKLYCDNEPAVMYAHNNQSSGAAKHIDIK
YYVVKDKVRDQTISLEHIKTERMLADPLTKGLPPNVFKEHVAGMGLREAL
>OARE1#LTR/Copia 1226-5203 via tfasty with Angela6_TM_1229-519, 2 stopcodons. [Avena sativa]
MDKSNFNFNVFAEKENLRNNGSNFTNWFRNLRIILSGEQKDYVLGKALGDPPAATALADEKAVYQSRKDDYGVIKSTMLF
AMETELQNRFEEYPGPFEILEELKTMFQTQARSERYEISEKFFNCKMEEGSSVSENAIKMTGYTQRLEQLECTIPEELKI
DRVLQSLPPSYKSFVVTHNQIGSTDMITELFAKLKAAEVDIKKVNHVLMVNKPTFKKGKGAKKPFKKGGGKRNAPAEKKL
RSGPKPDTECFYCKDKGHWKRNCPKYLADKKAGTIKGIFDIHVIDVFLTSPRCSSxVFDTGSVANICNSKQGLRNRRRLA
RDEVTMRVGNGSRVDVMAVGTLSLVLPSGLVLNLNKCYNVSALSMNIISGSCLLQDGYSFKSENNGCSIYMSNIFYGHAP
LVNGLFLLNLERDETHIHNIEAKRCKVDSDNTTYLWHCRLGHIGVKRMKKLHSDGLLESLDFESFDTCEPCLMGKMIKTP
FSGMMERATDLLEIIHTDVCGPMSISTRGGYRYFLTFTDDLSRYGYIYLMKHKSETFEKFKEFQNEVENHRNRKIKFLRS
DRGGEYLSYDFLTHLKASGIVSQLTPPGTPQRNGVSERRNRTLLDMVRSMMSLTDLPLSFWGYALETAAFTLNRAPSKSV
ETTPYDLWFGAKPKLSFLKVWGCEAYVKKLMPDKLEPKAEKCVFIGYPKETIGYTFYHRTEGKVFVAKNGSFLEKEFLSK
EVSGTKVELDEVIEPSLELESSAAPEIVPVPPAPTIEEANDKDHEASDDAATERRRSTRSRAPPEWYGNPVLTVLLVEDS
EPTNYEEAMMIPDSEKWLEAMKSELGSMSENQVWTLVDPPSDRKAVECKWIFKKKTEADGNVTVYKARLVAKGFRQVQGV
DYDETFSTVAMFKSIRILLAIAAFHDDEIWxMDVKTAFLNGNIDEELYMMQPEGFVDPKDASKVCKLQCSIYGLKQASRS
WNLRFDQVIKSFGFVPNCYEACIYKKVSGSSVTFLVLYVDDILIIGNDINMLNDVKSYLNKCFSMKDLGEAAYILGIKIY
RDRQRRLIALSQSTYLDKVLKRFRMDKAKKGSVPMLSGKISSKAQCLATVNDREAMSKVPYASAIGSIMYAMLCTRPDVS
NALSLTSRYQSDPGVEHWTAVKNILKYLNRTKEMFLVYGGDEQLVVKGYVDASFDTDKDDSKSQKGYVYILNGGAVSWRS
CKQSVIAGSIVEAEYMAAAEASSEGVWIRNFITELGMVPSALDPLEILCDNTGAIALAKEPRYHPKTKHINCKFHIIRDY
IADGDLKISKVHTDLNVADPLTKPLPRVKHDQHLSAMGVRLLPNVN
>Retrofit6#LTR/Copia 62-4384 (1 stopcodon) [Oryza sativa]
MASSSMAAAISNPLFGLQISDKLTKQNHPLWAAQILTTLRGAQLEEHIVSTTAAPAAEIEKEDGDKDKKTKIVIPNPEYK
TWFVQDQQVLGFIFSSLSREVLQQVAGARTAAQAWNMIDDMFSCKSKAGTINVLLALTTTxKGPMSMSEYIAKMRSLADK
MAATGKPLDEEELVAYIINGLDSEFDAAVEGLMATARIAPVSISHVYSQLLSYENRIRIRQAYLTTSANAANRGGGRGGR
GSSTGNRGGGRGGFGRGGHGRGAPSGASQGRGRGNDTRPVCQVCHKRGHVASDCWHRYDDSYVPDEKLGGAATYAYGVDT
NWYVDTGATDHITGQLDKLTTKERYKGTDQIHTASGEGTSIKHVGHAIVPTPSHPLHLKNVLHVPEAAKNLVSVHKLVAD
NYAFLEIHGKYFLIKDKATRRTILEGPCRRGLYPLPARSSLRQAFVATPSFVRWHGRLGHPSKPIVLRILSQNKLPCLSN
SVNESVCDACQQAKCHQLPFPRSTSVSNNPLELIHSDVWGPASESVGAKKYYVSFIDDYSKFVWIYFLKHKSEVFQKFHE
FQKLVERQFDRKILSMQTDWGGEYLKLHTFFNEIGISHHVSCPHTHQQNGAVERKHRHIVEVGLSLLAHASMPLKFWDEA
FLAATYLINRLPSKVIKFDTPLERLFKQTPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNIHKGFKCLDVST
GRVYVSRDVTFDEQVFPFANLHPNAGARLRAEISLLPPTLINEKTSDQGGEEHHDHLFNISMPNATDISCAESPRNVNSD
IPGAFGRVHGANGDLAGESASDSASVQAQLQRQASGSATQGESEQQRSGIQPARATSPAASPTAAPPSPARAVASSSGGA
QQSHQPGSSAPSESAQLSEVIRPKTRLQSGIRKEKIYTDGTVRYSCFTSSGEPQTLHEALGDKNWKEAMDSEYQALMKNK
TWHLVPSKKGQNIIDCKWVYKVKRKADGSLDRYKARVVAKGFKQRYGIDYEDTFNPVVKAATIRTILSIAISRGWTLRQL
DVQNAFLHGVLEEDVFMRQPPGYEQKDGYVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVAMF
MLVYVDDIIVASSSIDATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRVNMSDCKAVNTPLS
ISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAPTTKHWAAAKRILRYLKHTVKLGLKISKS
NSLLVSAFSDADWAGCLDDRHSTGGFAVFIGPNLVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPK
IAKVWCDNIGAKYMTANPVFHARTKHIEVDYHFVRERVARKFLQVEYISTKDQVADGFTKTLSVRQLEMFRNNLNLTGSD
>RLG_scMaximus_1_6_gag#LTR/Copia 54-2909  [Saccharum hybrid cultivar]
MSNGEGPPPTFEGDDFPYWKIRMEAYLEAIDVGCLRAATEGLPPIRDPANPSGDEEKYDRWNAKAKNALYRGLGKDIFNR
VRNAKNAHELWENLCALHEGTKSELEERYHIALKKINSFEMLPKESANDMYTRLNVLVEDLNALGLTKMSQSDVARKILS
VLPVEKYGHIVTVLHQSDLSTATPTQVLGKINAHEMYMHITPEEGSSSSKKKDLAFKASHDKKKKGQAMMVQESSSESDV
DDESLALMVRKTTKMLKKLNKSGIKFDGKKKKFFTSSKRKPISEMDCYNCGELGHLAHQCPRPPKDKYKNKNKGKKNDSS
DEEEEKKKNKPYKKKDGKRKEFHKKKKGGKAYIVGDWLTDIESSCESSEDESDDEKEKVATFVMGPSSSPTSSSPPSPPP
SPLSSTTHLCLMAKGERKVNYKTGGSHWVIDSGCTQHMTGDPRMFTTIEENGICQEKITFGDNSKSKVKGIGKIAISHDH
SLSNVLYVALLSFNLLSVGQLCDLGFQCLFTPNEVEVSKIDDKKVIFKGFRYNNLYLVDFTSEDANLMTCLFTKTSLGWL
WHRRLAHVGMNTLNKLLKKELVRGLKDVKFEKDKPCSACQAGKQVANTHPTKAFMSTSRVLELLHMDLFGPTTYKSLGGN
LYCLVIVDDYSRYTWTFFLHDKSEVANCFKKFAKRAQNEFEVKIKKIRSDNGKEFDNTNIEAYCDEIGIKHEVSSTYTPQ
QNGVVERKNRTLITLARTMLDEYNTPEKLWAEAINTACYASNRLFLQKFLGKTPYELLNGKKPDVSFFRVFGCKCYIYKK
RQHLGKFQRRCDTSFLVGYSSKSKAYRVFNHATGLVEETYDVEFDESNGSQGAIENCDDIGDEPLREAMKNMPVGDIKPK
DDDDDVQIVDPPSSSRVPQDDDRIERVENETLMSLMTKPRHKLKMLMLPIHLLKWLIEELHHYFKHIHKISS
>RIRE5_OS#LTR/Copia 121-3927 [Oryza sativa]
MHCFFVSRGKPSEPPLSPEEEAKFEATDCLFRGALISVLADNIVDVYMHIPSGKDMWDALEAKFGVSDAGSELYVMEQFY
DYKMVDDRSVVEQAHEIQMLVKELENNHCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVTDLIGSLGIEEKARAK
DNRGKKIEGGSSANLVQKKNPHASHNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKDCPERKDKKSANMV
ISEDGGTLGYGKFLPTVLSVCHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKIV
QLKNVQHVPSIKKNLVSGSLLCRDGFRLVFESNKCVVSKYGTFIGKGYDSGGLFRFSLDDMCNKVVNHVSDDDDESNVWH
SRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTL
IDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFTSFCEEYGIIHERTPPYSPQSNGVAE
RKNRTLTEMVNAMLDTAGLSKEWWGEAILTACHVLNRIPTKHKEVTPFEEWERKKLNLSHLRTWGCLAKVNVPIAKKRKL
GPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMRVGTITESRDATFFENEFPMKNAPSTSSQEPILSPEHFVPIEHIDQTLE
ENPEEDNIVATRKSKRQRTAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPV
GCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEE
IYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDNTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILIFG
TSLNVIEEVKDFLSKSFEMKDLGVADVILNIKLLRGDEGGITLVQSHYVDKVLSRFGYSDCKAAPTPYDPSVLLRKNRRI
ARDQLRYSQIIGSLMYLASATRPDISFAVSKLSQFVSNPGDDHWHALERVMRYLKGTMSYGIHYAGYPKVLEGYSDSNWI
SDADEIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVI
IKVNSSKDNMKSSRHVKRRLKSVRKQKNSGVIALDYVQTAKNLADQFTKGLPRNVIDCASREMGLRPT
>Copia-83_SB#LTR/Copia 40-4396 via tfasty with SC-4, 1 frameshift and 6 stopcodons. [Sorghum bicolor]
MSTRPHGRTPLQTDKEKLEGCGSKTPCRSPSPSRSPPRRSPRHFRAPCRSHTRHPREIIVERIIREGGGSSTWPxLTCTN
YHQWLLWMKLKLQARHLWDAIEYPDTVEYDDDRSALDAIYNAIPEDMVPALATKDTAHDTWEAIKSFRIGDDRVRRSTAQ
TLQALYENITLRADEAIKEFTLHLMNITQQMAVLGDLEPDHRVVAKYLRVARPRYKQLVISIETLLDFSQLSIEEVTGRL
KAPDDVEPSPPQNANGELLLTEEQWVEKYKKKAQDSSHGSSSSSGRGRGRGRGWGRGSGESRPPLDSPCPRCGKKGHxAS
DCRNKKEESAQQAHVAQEEEQGTLMIAIGSAQEELKQSTPPSVFFEQTASLPISSSSTSKIHFTERKVFTVLDGKPDPDP
KRWIMDTGTSNHMSGSRVAFAYLDTTVHGSVRFGDGSIAQIEGSGTILFTCKNGEHHSLPNVYYLPRLTANIISVSQLDE
GGYKVLIEDYVMHVRDEERHLLVRIPRSLGRLYVLKVNIARPICLAACTIDAAWTWHARFSHANFTALKKMAREVLVRGL
PTLTLVEQVYEACLAGKQRWASFPQKALGRSTEPLQLLHGDLCSPIMLATPSGNHYFLLLVDDYSRYMWIALLPSNDATA
AAIKNIQATAERKMGKKLLALRIDSGGEFISADFTNYYAHLGVRRKLTTPHTPxQNGVIEHRNQTIADTARTMMKAKALP
GMFWGEAVTTVVYLLNKTSCKAIKGKTSYKLWKGSTPVVHHLRTFGCVAHVKVTMPNLKKLDDRSRRMIFVIRVYNPLTR
RVHISRDITFDETAQWTxTPDHDVYPGGFIIEETEGLESTMITSTSATSLSGTSTPARSALTPPVGSTPTPTTSSPVPHQ
DVKFASPPGSRASELLDADHDDDALLQFHHIDSVIGPTPTPGLAAWNVEEHLLLASEVKPATLEEALRHECWRHAMLDEM
TSIEASGTWELVKAPSHIKPIGLKWVYKTKKDAAGIVTKHKARLLAKGYIQRQGIDFDEVFAPVDHLEFVCLLLAHAACE
RWAVHHMDVKSAFLNNVIQEEVYVAQPPGFVLRSHEQKVLRLVKALYGLWQAPHAWYSKLDQSLLALGFKRSVSKHVVYL
RGSGARRLVVEVYVDDLIITGGHQTDIDTFKQEMKSTFQMSDLGLLRYYLILEVTQMAEGMTVCQNAYAAKILETAGLTG
CKSTYTPMEPRLKLSKQSSSPVVDPTLYISIVGSLRYLLNSRPDLACSMGFVSRFMENPTTEHLAAVKRILRYISGTLDY
GCHYQRRRKEESLLIDYSDSDMAGDVDTRRSTSGVIFFLGNNLVTWQSQKQKVVALTSCEAEYMAGTTAACxGIxLARLI
AELRGEEAGAATLKIDNQSAIALSRNPIFQDRSKHIDVRYHFIRECVDDGRVKIEFTGTEEQLADIATKALTWERFCKLR
SRIGVHSVQHRH
>Copia-82_BRa#LTR/Copia 105-4592 via tfasty with Copia-113_BRa, 84.3% SW:5011, 1 stopcodon. [Brassica rapa]
MSSTTSSSTSTSSTTESSVSNSPYNLHPSDNPGALITPVLLRGDNYSEWAVELWNSLQAKQKIGFLDGSVLKPTTNPDLA
RWTSTNSMIVGWIRTSIDPQVRSTVTHVADALKLWESLKQRFSVKNAVRKHLLQDEITNCKQNGQSVLEYYGRLSKLWEE
IQNFKPVVSCTCTASAELEKEREDAKIHKFLFGLDEVRFNTIRSQIIDEDPLPELNTVYSRVIRAEQHINNMRTADTKQD
AVGFSIKSDITPASITAAAVATRSRDPARSCTHCKRTGHEASECFLLHGYPEWFLEQQQRNSSRNFSGNRGRGGRSSSSS
GRGRGRLNAASASVSAPSSTSTTDQISALITLLQSQQSQLSTDRLSGKTDLSDVIIDTGASHHMTGDLSLLQDAIDIIPS
AVTFPDGTASRATKIRRISLTKDYILVNMLYVPNFNCTLISVSRLLKQTGCIAIFTDTLCVLQDRFTRTLIGAGEERDGV
YYFKGVKVARSHQTSAKTISHAVLWHRRLGHPSYKVLSTLPVFSDLKVDFKDSHSCDICFRAKQTRSVFHDSFNKALEPF
SLIHCDVWGPYRTLSSCGAAxFLTIVDDYSRAVWTYLMLEKSEVKDLIKNFCVMSGKQFGKQVKTIRTDNGSEFMVLSSY
FRQNGIQHQTSCVDTPQQNARVERKHRHILNIARSLLFQAKLPVTFWGESILTAAHLINRTPSVVLHGSTPYELLHGSKP
SYDSLRTFGCLCYAHRRPRNRDKFSDRSRKCLFVGYPYGKKAWKLYDIDSNEFFASRDVVFLEEQFPGVTDTSYVTPPIY
QPNATIDDWLLPTTPACSGDTTPPVISTTTPVASDPAPVVPSPLLPITQTTDVALPPAAHDTTNASESPSPGSSFTQPSS
PVAQSTPATTISDTPPSPGLPELLGRGHRSHKPSVLLKDYVVNVSTVSTPPITSLSSTPTQGPPVSVSGITPYPIDSYLS
QARFSVAHTAFLAALTSTNDPKFFKEASLDDIWNNSMTDEYTALDTNHTWDITSLPKGKKAIACQWIYKTKFDANGKETR
KKSCLVACGNRQREGLDYTDTFAPVAKPTTVRLLLEIAATKRWELHQMDVHNAFLHGDLKEEVYMKLPPGFEDPDPTKVC
RLRKSIYGLKQSPRCWFEKLSTALKSYGFKQSRADYSHFSLIKDKISLHILIYVDDFIIAGNDISTIQRFKNYLHKCFHM
KDLGKLKYFLGIEVARNDDGIFISQRKYALDLVTEAGLLGSKPSLVPIELNDKLLLSKSPLLTDPASYRRLIGRLIYLTF
TRPDLCYTVHLLSQCMQKPRQDHWDAALRTVRYIKGSPSQGILLRSDSDLRVTAYCDSDWNTCPISRRSVSAYIVQLGQS
PISWKTKKQKTVSMSSAEAEYRAMAFTLKELKWIKQLLAAFGIRHDQPMRLFCDSKSAIYIAANPVFHERTKHVESDCHF
VRDAVVEKLITTEHIKTKEQPTDLLTKALPSTTFDYLLSKLEIHLQVEGGCRDKDI
>Copia-88_Mad#LTR/Copia 478-5177 via tfasty with Copia-22_Mad, 4 frameshifts. [Malus x domestica]
MAESNVRIENLLGMLTVKLQDDNFVKWSYQFSSVLRGYDLFDFFTGEAPCPPKYVIDTESGVTNEINAAYKDWVKKDLAL
LSLLIATLSDDAMEHVIGCKTSYEAWKCLQERFASVSMVRVNQLKTELHTAQKGGDSVDKFLMRLKGIRDQLVSAGEKVT
DNDFIIAVLSGLPADFEMIKTVILARDSPMSIKDFRAQLLVAEGSIESRMHSLSSSMSAMVVQGDRIGLQGFQGYEHGES
SNSQRSQVSLSNDKFGNNFQRGNGFNDQFGSNFQGGNGFSGIGNGNGSRGFQSSQRGNFNNRKFGGGNHNSRFSSGFNNR
NGNNGYSGSGKSVAGYEYASNGFTSTNSSAGHGNSKSNWNGNTNSKYSVSPECQICSRRGHTAPNCYYRAESGGSQSSGS
VICQICGKRGHIALECFHRNNFAYQGNPPPPPSIAAMTAQANVTQTEGSGVGFTAEENWILDSGATHHMTANLNHLNHVI
PYTGDGTITIGNGTGLEVTHIGSTSIPISKQSLMLRNVLCVPKITVNLLSVKKLCRDNGCWFICDDVVFFIQDKATRKIL
YTGTSDDGELFSIPVNVFAKSFAAKLEHCAGFVGKKIQVSRWHKRLGHPSEEVLAVMLKKFNNSVKVDSCESICSSCMSG
KMRRQSFPVRQNTATCLFEKVHTDVWGPSPKVSVQGYRYYVSFVDEYSRFLWIFPMNNKSEVFSVFVKFRAFIQTQFSAS
LKCLQSDGGGEYTSRTFVDFLDTKGIKHMISCPYTPQQNGLAERKHRHVVETAVTLMTEAKLPAQFWFHACSHAAFLINR
MPCRILHMKSPYQVLIGQEPDVQNLKIFGSAVYPFMRPYNANKLEPRTTQCVFLGYMMGYKGVVCYNIGSGKLILSRHVV
HDEEIFPYRNIQVSKIQQSSSSSSQNSRPIAIQLPRDTITPSPVHQDRGSAQAIEVISHSQGSDPVASGNSDMVVSQSSE
SAVDQHSDNQVSSSHHHFSSHTDSRLPISQAIVSHDIQAQNGNEHSMVTRLKSGAIQRKNYAALTATFPELNTLQITNDD
PFVGGFSFISEIADSLEPTCFRQAASISHWQHAMQEEYDSLRIQGTWNLVPAPDHRSIIGSKWVYKVKRNPDGTVSRYKA
RLVAQGFSQEHGVDYSDTFSPVVRHTTVRLILALAAMNKWELKQLDVKNAFLHGELQEEVYMKQPQGFVDSSHPNYVCKL
LKSLYGLKQAPRAWNSKFTSYLVTMGFTASVSDTSLFIKTDNNDIIILLLYVDDIILTGSCVTKVQLVVQELSSVFDLKD
LGKLTYFLGLQIQYKPNGDIFVNQSKYIKDLLHKAGMDSCKPANTPCKPHNQMMMTEGELLSDPSSYRSIVGSLQYLTFT
RPDIAFAVNTVCQHMHSPTEVHFGAVKRILRYLHGTMQRGIVYSSQSQMHLTAFSDSDWAADLNTRRSVTGYIVFLGDNP
ISWQSKKQTSVSRSSTEAEYKALAHTAADVAWVRHILRDLKCVLLQPPVINCDNMSAIALSSNPVFHSRIKHLDTDYHFV
RERVQKGDLAVAYVPTDEQTADVLTKGLHSPAFIRHCYNLKLGTPSLD
>Copia-93_GM#LTR/Copia 55-4083  [Glycine max]
MASATNTGGFIHALPVLDGKNYDQWVVRMEAILGFHEILGIVKEGISEKEKDDAAIMKKDFKAKCLLHQCVDLVVFEKIA
KASTAKEAWEILQKAFGNAGKTKKVKLQSLRRQYELLSMSDQETVADYFNRMQLLVNSMKTCGESLSDQMIVEKILRTLS
PRFDHIVVAVEESKDLERLKIEELQNSLEAHEQRLIERANSRDLDQAMQAQFTKNDGNKKKWKKGKGSGKGNWFSNKEKD
KIGDKPESSNKGGGGNFSNQKGKKGQDKRKIQCYNCEKWGHYASECWHGKGKQNKNSEEKANVAQDEDSEDEHPVMLVAT
SDSNPHSEAWYLDTGCSNHMTGHKEWLGDFDENRRSKIRLADSRTLSAEGMGNILIQRKDGKTTLIENVLYVPGMRCNLM
SVGQLVEKGFSVSMKDGMLELFDPNLKLVLRSPLSRNRTFQANIKAAEVQCLMATEINQLSWLWHLRFGHLNFKSLNMLV
TNNMVIGLPKLNVPEKVCDVCLIGKQPRNSFNSHLPMRASSVLGVVHSDVCGPFEVPSLGGNKYFTSFVDEHSRMMWLYL
IKAKDEVFSVFQKFKVMAEKQSGQALKVLRTDGGGEYTSKAFNTYCEQHGIIHEVTTPYTPQHNGLAERRNRTILDMARS
MLKQKKLPHSFWGEAVSTTTYLLNRCPTKRLKEKVPEEVWSGRKPLVSHLRIFGSLCYKHIPDAKRRKLEDKSEPMILIG
YHVTGAYRLYNPHKQKVEISRDVYFNEAEAWDWSRQRCEIRPMISTIEEDQNEVSTVNAEINAEAESPQNQRPQRERRMP
TRYSDFEMGSDIEVTEEGELVHFALLADAEPISHEEALQEQVWKNAMLEELNAIEKNNTWELVDLPNKKRAIGVKWVFKL
KLNPNGTVAKHKARLVARGFLQKPGIDYSEVYAPVARIETVRLVVAMASNHNWALFHMDVKSAFLNGPLEESVFVTQPPG
FVKEGMEDKVYRLNKALYGLKQAPRAWNRRIDTFLIQSGFKKCSVEYGVYVKKETSVILICLYVDDLLVTGSDLKGIEFF
KAQMMQEFXMTDLGTLAYFLGLEFVTTSKGILLHQQKYATDVLKRFHMADCNPANTPAEVNTKLEIAEEEEAVDPTMYKQ
LVGSLRYLCNSRPDLSFVVGLISRFMNNPKKSHLTAAKRILRYVKGTLEYGVLFPRKTDQRTVSLLGYSDSDWCGDKTDR
RSTTGYLFKFLGAPISWCSKKQPVVALSSCEAEYIAGSYAACQAIWLDSLLDELKFEAKKPIKLLIDNKSAINLAKNPVS
HGRSKHIETRFHFLREQVNNGKLEMTYCSTETQLADILTKAIRPDRFVKLIIELGVISCNDLD
>Copia-93_BRa#LTR/Copia 23-4187 via tfasty with ATCopia48, 80.9% SW:4600, 1 frameshift and 2 stopcodons. [Brassica rapa]
MEALELYNPPSLKIVNSVTVKLTERNYLLWKNQFEAFLNGQRLLGFVTGEIPQPTPTLPVPGINGTTTPVSNPDHHTWFQ
TDQVIKSWLLGSFSEDIQSLVVSCSTSHQIWVTLGKHYNRPTSSRLFELQRKLQTVSKQAKTMTEYLTDIKLICDQLASI
ESPVTERMKIFATLQGLGKEYEPLITSIEGAVDMLPDPTLEDILPRLHSYEARIQRYNTSSDVSPHLAFNVERSNFQSSY
YNSRGRGQSNGRFGRGRGRGHFSTRGRGFHQQLSSSGFRSGSSASSVSSDDRPSCQICGRYGHTAMRCWHRFNNSYQEEE
LPMAMAAMHITDVTDHAGAEWFADSAATSHITSSPHHLANSHPYRGNDAVMIGDGNFLPITHVGSTDIASTSGTSLPLKD
VLVCPGIAKSLLSVSKLTNDYPCSFEFDDNRVFVKDKQTKRVLRQGSTREGLYSLKSPKPQALYSTRQISTSDEVWHRRL
GHPHDQVLKYLNQIKSIAVNKSSLKICESCQLGKSSRLPFVASSFVASRPLERVHCDLWGPSPVTSNQGFRFYVIFVDNF
SRFSWLFPLKAKSDFYNTFIMFQKMIENQLSTKISMFQCDGGGEFMSNKFLSHLKDCGIQQLVSCPYTPQQNGLAERKHR
HLTELSLTMLFQSKTPQRYWVEVFYTANFLINLLPSSVLEDKRSPFEVLHGKAPDYSALRTFGCSCYPMLRDYAATKFDP
RSLRCVFLGYNDKYKGYRCLYPPTGRVYISRHVIFDELSFPFETIYKDAHPQIVTPSLGAWQRSFMSSESEQSNKSSTAE
GPVVSSNVLLQTLPPQRCNEAETSSTASNLNSNPIESSSVRTALSPQQNVPAxTSQHSMITRAKAGIRKPNPKYASSPTS
VAAALRDPRWNNAMGDEISTCMVTNTWTLVPCTPEMHVLGNQWIFRNKLNADGTVETPRARLVAQGNNQEEGIDYLETYS
PVVRTATVRIVLHLATIMKWEVKQMDVKNAFLHGDLLEKVYMRQPAGFVDKTRPDHVCLLHKSLYGLKQSPRAWFNKFSD
FLIEFGFICSIKDPSLFIYSHDGNIIMLLLYVDDMAITGNSSATLTKLLEELNARFMMKDLGKLHYFLGIQASCHDQGIF
LTQEQYAIDLLTVAGMEQSAPVSTPLPLQLNNVPEQNVPFTDPHYFRSLAGKLQYLTLTRPDIQYAVNYVCQKMHAPSVS
DFTNLKRILRYVKGTLSMGISFLRDTDCTLRAYSDSDWAGCPSTRRSTGGFCTFLGQNLISxSSKKQPTVSKSSTEAEYR
ALSETASELAWISMLLKELGISLPVTPQLFGDNLSSIYLTANPAFHRRTKHFETDYHYVRERVALGSLVVRHIPARLQLA
DIFTKSLPTAAFQSLRYKLDVDYHPTHS
>Copia-81_SB#LTR/Copia 129-4380 via tfasty with Copia-21_SB, 1 frameshift and 4 stopcodons. [Sorghum bicolor]
MSTSGEKESMDRAFNQAAGNLVWPMLTRSNYQEWASHVKCNLEGMYLWDAVEADPDKVERRRDRLALGAMLRGVPQDMHS
MLLNKKTVKEAWEAIKTMRLGADRVKEVNAQKLLAEFESISFKLGESIDDFAIRISKLVTDLRGLGEESVTDTRLVKKFL
RVVPQRYSQVAVAIEMVKDMKTMTIEDLVGHLRAAEERFESSVDQVTEKTEKLLLTEEEWMSRNKSRMQPDSNYGAKGGK
QYVKKERSGARAGGEARDSWRKKLDAMGTPWRKGRCSKCGIWGHYKKECxSKQKEERQEAAHHVNGDPETGALLVAQVCT
VARTPEEHCQRVFLNQERVFPAEYSSGAWILHTGATNHMTGCRESLASLDDAVRGAVRFGDGSTVQIQGIGAVTIGGKDE
GHRVLTEVYYIPTLKCNIVSLGQLEESGCRVEIDHGILEVFERSQANKKQRSVLIRAERKNRLYVMKVQLSSPVCLLKKM
EDLAWLWHARFGHLNFRALHDLGVRQMVEGIPMIKRAEEVCDGCALGKHHRAPFPQASAFRAEGGLDLVHIDLCGHITPP
TPGGKSYFLLIVDDFSRYMWLDLLASKDDALAYLKRIMTAAEVESGRRLRAIRTDCGGEFDSGAVITFCSERGIRHNTTV
PYTPQQNGVVERRNQTIVEMARCLLKSMKVPGKFWGEAVKTAVYILNRSPTKSLNNKTPYEAWSGKKLSVRHLRTFGCRA
YAKRNGPGVNKLADRSIPGVFFGYGEGTKGYRVYDPIHKKLMISRDVIFDEKHPWNWGEQGSRQAPSSTFSIDGYADTVH
HPATDGVLPDGPIFSGAPASPEATIPLDDDGNGGHSTPPHTPISGGLGSTPSATTVQWATPPTDASEDSDGGPRRYRTIT
NLLDTTDEIHDMEYSGLCLVAAEEPGSVEEALKEECWRQAMQAEMQAIESNRTWDVSDLPAxQRAIGLKWVFKVKKNPEG
RIVKHKARLVAKGYAQQQGVDFDEVFAPVARIETVRVLLALAAHGGWQIHHMDVKSAFLNGDLTETVYVQQPPGFIVGKG
DKVLKLNKALYGLRQAPRAWNFKLDKELINLGFVRSKLEYAVYRRTSKNSFLIVGVYVDDPVISGPDVNEISRFKLEMKE
KFSMSDLGLLSYYLGIEVKQGRDGITLSQSAYALKILENASMTNCNPCATPMEARLKLTKSMEEEVLNPTAYRSIIGSLR
YIVNTRPDLAYSVGVVSRHMEAPTKQHWGTVKHILRYLKGTVEFGCKYERGAELKPLLLGYSDSDFAGDTESRKSTTGVV
YFLGKSVVTWASQKQKIVALSSCEAEYVAAAAAACQGVWLSRLIGDLLETKEMPVKLLMDNMSAIALSKNPVHHDMSKHI
DTKYHFIHxCIEQGKVEVDHVRTEEQLADMFTKSLGRVRFLELRQALGVIKVHQVxG
>Copia-78_PT#LTR/Copia 52-4127 via tfasty with Copia29-PTR, 76.6% SW:3509, 1 frameshift. [Populus trichocarpa]
MASNNSSSSSVAISSILPTQLHHFITIKLTQDNYLLWRAQLIPYLRGQNLFGYLDGSVPCPAITIPNSSTHIPNPEYIHW
SQQDQIILSALLSSLTESLLTQVVAYISSRAVWLALEKTFSSTSSARILSMRFQLSTLKKASLTITDYFTKVKQLSDTLS
AISHPLDSSEITSYLLASLPPSYDSLVTSITTRLEPISLDELYGCLLTYKNHLNQQNTTTGFSLPTANIVTSYPTRGHHG
LPPYRGGSHYGNRSRGRGRGLHNSFPHNQSQSTRTQCQICSKIGHTAANCWYRFNQQPHSPSPPTPQANMAHSSASSYDQ
NWYPNTGTTNHITSNLSNLSIQADPYTGPDQIQVGNGQGLRILHTGSSLLYSTSKSFLLNNILHAPEIKKNLLSVHQFTK
DNNVYFEFHPSFFCVKDPSSGATLLHGPSNNGLYPLRTLTSPSTSPASYLNEKASFPQWHARLGHPAFRTVKAILSKFQL
AVTSNKNFPVCHACQLGKSHKLPFHLSTSVSSSPFQLIFMDVWGPSPTESIRGNKYYLSIIDDFSKFIWLFPLNAKSQVA
HTFINFQTQIERYFDCKIKSVQTDFGGEFQALKSHLLTSGIIHRLSCPHTHEQNGSVERRHRHIVETGLTLMANASVPHQ
YWDDAFLTATYLINRLPSPVIHHKTPLELLFKQTPDYTLLRIFGCACWPYLHPYNSHKMDYRSALCVFLGYNPLHRGYQC
LQQSTGRVFISRHVIFDECHFPFQQKHPPSPAPPNPSPTLPSSLCISQPNTVPTTLSLPPTQLALDLSNGQNNPPENTPP
ATIFEQPNSHPMITRSKKNIHRPKNVPPDMAPTPRALLTKIHSIEPTSFTAASKSPHWRQAMNEEFQALLDSGTWVLVPP
KPNTNLVGCKWVYRIKKRADGTIERYKARLVAKGFHQLPGIDYDDTFSPVVKPTTIRTVISFAVSQTWPIRQLDVKNAFL
HGTLQETVYMTQPPGFSDPSCPEYVCHLQKSLYGLKQAPRAWFSKLSNKLVSMGFSASKADTSLFIFKSPQAVIYFLIYV
DDIIITGPNKSLLHSVISNLQQDFPLKDLGNLHYFLGVEALLDDRGLFLSQQKYIFDLLKKTDMINAKPVNSPMSPSANL
SLFKGDPFHDPTLYRSTVGSLQYLSFTRLDLAFAVSQVCQFMQRPTTDHWIAVKWILRYLRQTIHHGILIRRTSSTDIHA
FSDADWAGCSDDRRSISGYCVYLGSNLISWSSRKQPTVSHSSTEAEYHAVANTTAEVMWLRSLLTELGILSPTPPVLWCD
NIGATYLTANPLYHSRTKHIELDIHFVRDQVAQRQLQVRFISSTDQIADSFTKALLTARFCSLRNNLNVHELPLRLRGR
>Copia-78_Mad#LTR/Copia 114-4273 via tfasty with Copia-64_Mad, 1 frameshift. [Malus x domestica]
MSGSGGSEVRTPIFSGENYEFWRIKMVTIFKSHGLWNLVEKGVKTSDSKKKKSEGSSEDDGDEEMAAVLMQDAKALGIIQ
NAVSDQIFPRIANAESAKMAWDLLYGEYHGGDQVRSVKLQNLRREFEYARMRDDESLSSYLTRLNDLINQMRTFGESLSN
ERLVQKVLISLSKPYDPICLVIENTKCLETVELQEVVAILKSQEQRFDLHTVDATERAFSSLSVNPKEQNKSGGHSSSSR
SQRNWNSKGKKWESKPKFQQKSPLHNYQSANAPQSVGQEVAKPQCKVCSKYHFGECRYKGKPKCFNCDKFGHWARECNVG
RSVQKANNASQLEMTGNLFYANNAVTEPKVNGEWYVDSGCSNHMTGNVDLLVEVRTNVAGKVQMPTGDLVNVAGMGSLVI
DTNKGRKYVREVMYLPGLKENLLSVGQMDEHGYFLVFGGGMCNVYDGPSLECLVMRVKKKVNRCYPLTLFSENQMALKAS
VTHSTEIWHRRLGHLHFGGLKQLRDKEMVHGLPQLADYNGVCEGCQFGKQHREEFPRNQVYRATAPLELIHVDLCGPMKT
ESIAGNKYFMLLIDDFTRMIWVYFLRYKSDAFNCFKKFKAMAELQSGFKIKTLRSDRGGEFKSAEFDQFCEKEGLQRQLT
LAYTPQQNGVVERKNRTVIEMAKSMLHEKRMPYFLWAEAVHTSVYILNRCPTKALNNITPFEAYSGRKPGIAHLRVFGSL
CYVHVPSEQRHKLEPKSLKGVFVGYATCEKGYRVFDPLSKKLFLSRDIVFDEEAAWNWEENSGSTFLNTGSFVHGDISAE
SNDRMVLSPTSPILPQSRRALSSEDYETESRSPILGESSSMSNAIEGQNQAFDNTPLKWRNLNDVLAQCNLCIMDPEKYE
DAKQDESWLKAMEDELFMIEKNGTWKLVDRPTEKPVIGVKWVYKTKLNLDGSVLKNKARLVAKGYAQKPGLDYNETYAPV
ARLDTIRTLIALAAQKSWKLYQLDVKSAFLNGVLQEDVYVEQPEGFVVKGKEEMVYKLHKALYGLKQAPRAWYGEIDSYF
SQCGFEKSLSEPTLYIKARGEDILIVSIYVDDIVYTGSCKPMLEEFKEDMKMKYEMTDLGLLHHFLGMGVIQTDSCIFIN
QKKYASSLLSKFGLNEAKTVSTPLVATEKLSKDDGSGSASENLYRSIVGSLLYLTATRPDIMYAASLLARYMHCPTNRHY
GTAKRVLRYIKGTLDYGLEYVKGRKSCLIGFCDSDWGGSLEDSKSTSGYAFSFGSGVFSWASVKQNCVALSTAEAEYISA
SEATAQAIWLRFVLEDFGELQTVATPLHCDNTSAIAITKNSVFHQKTKHIDRRYHFIKDALQEGIIDLIYCPTEEQIADI
FTKPLAKDRFNFLRDMLGVKSAQNLKG
>Copia-79_ST#LTR/Copia 206-4867 via tfasty with Copia-74_ST, 75.7% SW:4473, 4 frameshifts and 2 stopcodons. [Solanum tuberosum]
MVDSSDDFIPNASASTVRVEIPSPFYLHPSENASSSLLPAVFYGTGYRSWRRAVLRALSVKSKTGFINGKVVRPDPTDPS
FQQWERCDDMVTSWILNSLSPDLRDSLQYVNNAQELWVELEDRYDQTNGCKLYQLQKEINDLVQGTLEIVTGYYTKMKKL
WEEMSTIDISSQCNCVCTCGGKTKLVKAEQDRRLIHFLMGLNEMYTAVRGNILMMNNLPSMAQAFAILSQEEKQREVKPH
NHTTLDSTSLNAYGQTPSRGFRTNYSPSRRGGTSSGNTSNNTGFRGNSSTSRASLFCDYCKKSGHTKDRCYKLHGYPSNP
NPRFQKGKGTGSAANVCAPDMNGVQSKEESEVRRQMPLNLSKDxYEQLLNLLGTLQIGNGASNSDNSNSMLNGVVNLAGI
LACYSSITDIGDLSCKCVKLTTGSWIIDSGASHHMTYDKTTLTNIKSLPYPFLISLPNGYKVKVTEIGDVCLNPALTLRK
VLFVPSFKFNLISVHCLALQLNGVVSFDKFSCLLQGPSLKSPLELGKAKNGLYFLCSKCHNCYPSAENKPPRLPHFNCHL
VPSLDNIDKISNSKVYTSSSVKHSPINKEDCIVASSSCLSDACPSFANISNHIHDDELLWHARLGHVPFVKMKNISTIPM
KFSPRQPFSCTICPMARQTRMPFPESITTTTKVFELLHVDLWGPYHIPTDDGYHYFLTMVDDHSRSTWTQLLRCKSNALQ
TIKAFISLIENQFQTKLKAIRSDNGLEFTSAEATCFFQTKGIIHQRTCPYTPQQNGVVERKHKYLLEIAKALLFQSKLPM
RYWGECVLTATYLINRLPTQQLHNKTPYEILYQKQPTYSHLKSFGCLCFPTILKTHKDKFEPRTTPHIFVGYPFNTKGYK
VLSLATKRVHISRDVTFHEKVFPFAIAPDCSSFNSIAQMFIHTTNMTCIPGQMNTFTDDDMLDILTPHEVTNNQTISNTN
VNVIPSAVQPEPTNDLPSPNISNDTLPAPRRTTRPIHTPTYLKEYNYTLPKLHSLTSFMSHEHICFTSLCSDSQQLVTTI
SHDCEPTSFEEAILHPAWQQAMTQEFEALYANDTWEMVMLPDGKKAIGCKWVYKIKHKADGSVERFKARLVVKGYTQQAG
VDYTETFSPVVKMTTVGTLISLAVKKDWNLYQLDVNNAFLHGDLHEEMYMVTPQGLAVGDDNMVCRLKKSLYGLKQASRQ
WYEKLANSLCSKGYQHSDSDYSLFYKRKGCSLVFVAVYVDDIILTGTDVDEINSLKAFLNDQFKIKDLGRLHYFLGLEIL
YRHDGVLISQRKFTSDLLKEFDVLNYKTATSPLDCTEKLTATDGKILYDPTHYRKLIGKLNFLTNTRMDIAYSVQHLSQF
MQSPREPHLKAAYHVLRYLKxDPTLGIFISNKPDFVISAYCDSDWAACPDSRKSVSGYLVLMGDSPISWKSKKQATVSIS
SAEAEYRAVRQVVGELVWLERLLGELTVQCSLPIHVHCDSQAAVHIAKNPVFHERTKHIEIDCHFVRSKLQQGLITLHHI
STDSQLADIFTKALTGVKHTTLLHKLSVLTSPPT
>Copia-81_GM#LTR/Copia 139-4092 via tfasty with Copia-2_SL, 85.6% SW:4320, 2 frameshifts and 1 stopcodon. [Glycine max]
IKIEKFTGKNSFNLWRIKMxALLKEQGIWAPLSGQSSKIDKSVLELQEEKAHSLILLSLSDEVLYEVSEELTVVGLWLKL
EKLFMTKSICNKLLLKRRLFGLRMREGTPLKEHLDELNFVLMELRDIDVKMEDEDLAMILLASLPPSYENFVSSLSVGKD
SITLEEVKSSLYSRELRLKASGNGDEASASGLSVTDSAKGRRRRKANGGKKSKVDPKDICNYCKEPGHWKRDCPKKAKKD
FVVALVQNDSSSESDLVLAVGEQLQQHSEQWVLDSGCSYHMCPHRHWFVTYEKKSGGNVLMGNDAPCKSVGIGSVQIRMH
DGVVRTLTEVRHVPELKKNLVSVGAMDSKGFSCWVEGGVMQIRGKGKFVVMQGTKQGNLYILQGSTVTGSVSAVSQSGSH
ASNGSSDNSLWHLRLGHMSEKGLDILSKRGLLGNHKVEPLQFCEHCVYGKQHRTKFPKVVHTTKAMLDYVHSDCWGPSRV
PSLGGARYFLSIIDDYSRMTWVFMMKQKSEAFKFFKHWTILMKNQTGKTVKCLRTDNGLEFCSTEFNEFCRDEGIARQRI
VRYTPQQNGVAERMNKTLLERARCMLSNSGLNRSFWAEAVNTTCYLVNRSPSTAIDFKTPIEVWSNKPAEYSMLKVFGCP
TYYHVSEGKLEPRAKKGFFMGYGDGVKGFRVWSPSERKVILSRDVVFDELSMLHSKSDEDSGKAKDVTKQVEFESSTIRN
ISDQKQFEAPDETDQDLQMHPQHQNSTPVEGTDWTSQNHPKQPKTTTPRKSQRQIKAPERYGFDIVSYALQVAEEIDSFE
PTTYQEAISYSEAEEWTMAMNEEMESLQKNQTWDLVELPEGRRVVGCKWIFKKKSGSSTEEVIRYKARLVAKGYSQKEGV
DYNEIFSPVVRHTSIRVLLALVATLDMELEQLDVKTTFLHGRLEEDILMQQPEGFEVEGKENFVCRLKRSLYGLKQSPRQ
WYKRFDEFIVSHGYIRSPYDSCVYHSKVEDGSHIYLLLYVDDMLIASQNLLAIQKLKSLLSSEFEMKDMGAAEKILGMEI
KRDRVQKKLFLCQKEYIQKVLNRFGMASAKPVCTPLTTSIRLSELNTTQSESEKEYMSRVPYASVVGSLMYAMVCTRPDL
AQAVSVVSRYMGNPRKEHWQAMKRIFRYLKGTTDIGLVYHGDTSCALAGYSDSDYAADLDARRSVTGYAFTIGNSLVSWK
ATLQPTVALSTTEAEYMALAEATKEGIWLKGLISNLGFPQEKAIIFCDSLSAICLAKDQVHHERTKHIDIRYHFIRTEKR
VEVQKVDMRENPADMFTKPVPRSKFMHCLDLLNVDCWK
>Copia-81_BRa#LTR/Copia 59-4426  [Brassica rapa]
MGDVTEVGKSSDVVGAGVTNTTLVSPYFLHPSDNTGQAQSPILLNGDNYERWAKLVTNSLRAKRKVCFLDGTLKRPSSDS
VEAEKWDMVNSMIIGWIYSSIEPKLRPSVSLVDSAKLMWDSLQRRFSVTDGTRVHQLRADLAACKQEGQSVESYFGKLKV
LWDDLSDLESGFQCCCGDGTCAAMVKYEQHCEKIRVHQFLMGLDNARFGTSRSNLLSRESVLNLDRVYSQIVQEERHLNA
TRSTEERSAAVAFSTNSATAAAARPFNNKGTKCSHCNKTGHDVSNCFQLNGFPEWWNEKSGGRGTGKGRGEGSVRGRGRG
AVQQRAYHTQTAEEAAPGIPNFTADQWKSLAQFMNSQKSGADEKLSGKREKLLIMGKESRFNVIIDSGASNHMTGDATLL
TDVRSMVPCAIKLPDGGITWAMKCGTLTLGRKLVLHNVFLAPHLDITLISVAQLLKDIDGFVLFTKQFCVIQDHNLKTLI
GAGEERDGVYHYKGVIDAQAGSASNLQSRELWHRRLGHPSPRVLSFLSGVGVFKNNVGVLDNSCDVCIRAKQTRDKFNES
SNKADAPFSMIHCDLWGPYRTSSSCGAHYFLTIVDDYSRAVWTLLLLEKSEVPKLLKNFIAFIERQFKKQVKVVRSDNGT
EFTCLRSYFQESGIIHQTSCVATPQQNGRVERKHRHILNVARALLFQAHLPVKFWGEAILAATHLINRTPSILLEGKTPY
ELLSGSSPDYSQIRVFGSLCFARRVQRSKDKFQERSIRCLFLGYETGKKGWIVFDLEKEEKFVSRDVIFNENVFPFAETC
VSEQHAEVTLNDDIHPAVFDEDVESPTTGGVGSQLQEGGVPAEQSLGDKTVEASPVADKETEVVETSQQETHEEEQLGRG
RRVKQQSVLLKPFVTYSAEANTHHATPSNTQQSSGTCLYPLTDFVSYDRFSPSQQAFLASVMAEVEPKTFKEAVRDPRWN
KSMGVEVDALEESNTWDVTTLPPGKHAIESKWVYKIKYNADGTVSRHKSRLVACGNRQIEGIDFTETFAPVVKMTTVRIL
LKVASVKGWELHQMDVQNAFLHGDLEEEVYMKLPPGFKSTRPNQVCKLKKSLYGLRQAPRCWFAKLSKALLDFGFRQDRA
DYSLFTYVTGASVLYVLVYVDDLIIGGSDPQLTSKFKTYLSECFHMKDLGPLKYFLGLEVSRSKQGIYVCQRKYALDVIS
DSGMLGAQPVDFPMEQNHNLAKDASEVFRHPDKYRRLVGRLVYLVITRPELSYAVHTLAQFMQTPRTRHWEAALRVIRYL
KGSPGRGILLSSDSNLSLASYCDSDWASCPLTRRSLTGYAVMLGGSLVSWKTKKQQTVSRSSAEAEYRAMAMTYSELTWI
ISLLKTFGVRQQAPVPFFCDSQAAIHIANNPIFHERTKHIEADCHYVRDGVQAKIIATKYVRTTEQLADIFTKALGRQQF
QYLLGKLGVLDLHSPT
>Copia-95_VV#LTR/Copia 149-4223 via tfasty with Copia3-PTR, 88.3% SW:5133, 1 frameshift. [Vitis vinifera]
MASETFVQPAIPRFDGHYDHWNMLMENFLRSKEYWHVVSEGITEPTDNATMTQAQRTELDGQRLKDLKAKNYLFQAIDRS
ILETILCKDTSKHIWDSMKKKYQGSARAKRQQLQALRTEFETLRMRSGESVTDYFSRTMAIVNKMRIHGDKTEDVTIVEK
ILRSMTPKFNFVVCSIEESHDIDELSIDELQSSLLVHERKFNQQEKEEQALKASTENHLATRGDRGRGRSRGRGRGNYDR
GNQHQHQRQDNRFQGRGQGGNYSTTYKSRSTDKSNVECYRCHRYGHYKSECRTNMNKQGEERTNFAEKEEEVSLLMACHA
NQGTHPNLWYIDTGCSNHMCGDKSAFSDLDETFRNSVTFGDNSKVSVMGKGSVRIHSKEKSDQIISNVFFVPDLKTNLLS
VGQLQEKGYEIFIKDGVCRIQDEKLGLIAQVNMTTNRMFPLYLDNTTQNCFSAKLMDEGWLWHFRYGHLNFGGLKTLQQK
NMVTGLPPIQTPSQICEECVVGKQHRYQFPKGKSWRANKVLELVHSDICGPINPTSNGGKRYFITFIDDYSRKTWVYFLQ
EKSEAFSTFKSFKMLVEKEAGKPIKIFRSDRGGEYTSQEFVNFCENHGIQKQLTAAYSPQQNGVSERKNRTILNMVRTIL
SKGHIPRSFWPEAVIWSIHILNRSPTLVVQNVTPEEAWNGRKPSVNHFRIFGCIAYAHIPDLDDKGEKCIFLGVSEMSKA
YKLYNPITKKIVISRDIIFYEGSFWKWDDNTTKQQIQADFDGENEEERQQPLQQRIPAAEIPPNEAPTTAETSPTTPEFD
EQVEAAVGSSSHRVRKRPAWMSDYEVTGIDQSEDPLTHFALFSDCDPTTFESAVKESKWRKAMDAEIAAIERNDTWELSE
LPKGHKTIGVKWVYKTKLKENGEVDKYKARLVAKGYKQEFGVDYKEVFAPVARHDTIRLVIALAAQNSWPIFQLDVISAF
LHGNLEEQVFVDQPPGYIKVKNEHKVYRLKKALYGLKQAPRAWYSRIEAYFLKEGFQKCPYEHTLFVKVSNGGKMLIVCL
YVDDLIFTGNDSVMFERFKKSMMVEFEMSDLGMMHYFLGIEVVQSDTGIFISQKKYVQEILNRFQMKDCNPVSTPTQFGL
KLNKDHGGKKVDNIIYKQIVGSLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKRICRYLQGTKDFGLFYKKGKRSDL
IGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEAEFVAATACACQAIWLRKILEELHLKQVGATTIF
CDNSSTIKLSKNPVLHGRSKHIDVKYYFLRELSNDGVIDLVYCRSENQVADIFTKPLKLAAFLKLRKLLGVSTLEDSI
>Copia-104_SB#LTR/Copia 199-4540 via tfasty with Copia1_ZM, 2 frameshifts and 2 stopcodons. [Sorghum bicolor]
MSSSSSSNNSNPFSSHVITEKLRKANYALWKAQVRSAIRGARLHRYINRDQKALEKELVSTTDGKEVKAPNSAYEEWEAR
DxTVLSFLLSSLSKEVANQVSTCETAEEVWNTIEKMYASQTRARIVNLRIALANTKKGNSSTADYFAKMKALGDEMTAAG
RHVEDEELVEYILTGLGEEYASFVTALTIRVELVSVEELYSQLLNYETRMDLTYGGGVPGVGSANTASRGRGGLSRGGGH
GQGGQGSHNTQRGRGRSGPSRGRGNYNKGGGRGGFNTTNTHRVSPPAEDDDRPLCQVCYKRGHTAEKCWHRFDENYMPDP
KLVAAAMNSYSVDTNWYTDTGATDHITSDLERLSFRNKYHGGDQIHTASGSGMHISHVGHTTLHTPHRDIHLNNVLHVPQ
ATKNLVSVHKLASDNSAFLEFHPNFFAIKDQAMNKTILKGRCRQGLYPIPAIRIKQAHGATKVSISKWHNHLGHPSSSVM
KHIISSNNFHVLDESPNESVCDACQQAKSHQLPYSRSSSVSNAPLELVFSDVWGPAMESVGRKKYYVSFIDDFSKFTWIY
LLKYKSEVFQKFCEFQALVERLFNRKILAMQTDWGGEYQTLNSFFVKIGITHLVSCPHTHQQNGAAERKHRHIVEVGLSL
LAHASIPLKFWDDAFLSATYLINRTPSLVIDNSTPLKRLFKNDPDYSFLRVFGCACWPNLRPYNAHKLEYRSKCCAFLGY
SHLHKGNKCLDISTGRVYISWDVIFDENIFPFSELHPNAGARLHSEIDLLHPTLTNSGAETVVGNMTNTIHHVSVSPVEN
AGQEPAETADAMHMQYQAPSVSHGDDSADSFDLAPSPTSLSRSTPVHAPANGGSAPTPDGTVATAPTMPTPSASEPTAPA
SSQGGTGSGVVSVPSAAAGPSAPSSSHHQHQTRLRSGIRKEKAYTDGTVRYSFLTTSGEPWNTEEALENKDWRKAMDAEY
EALMNNKTWHLVPPQKGRNVIGCKWVYKIKRKKDGSLDRYKARLVAKGFKQRYGIDYEHTFSPVIKHSTIRIILSLAISR
DWSLRQLDVQNAFLHGYLEEEVFMQEPPGYEDHTKPGYVCKLDKALYGLKQAPRAWHARLSNKLTSLGFQVSKADTSVFF
LNKENLTMFVLVYVDDIIVASSAxRATNALLKDLQSEFALKDLGDLHYFLGIEVNKTQNGMVLTQDKYASDLLKRVGMFD
CKPVAAPLNTSEKLSLYEGSPLGPKDATYYRSVVGALQYLTLTRPDISYSVNKVCQFLHAPTTVHWAAVKRILRYLKQCT
SLGLKLSKSSSTLVSAFSDADWASSGDNRRSTGGFAVFFGSNLVSWSARKQGTVSRSSTESEYKAVANATAEVMWIQTLL
QELKVSTPKAAKLWCDNIGAKYLSANPVFHARTKHIEVDYHFVRERVARGLLEIDFVPSGDQIADGFTKPLSVRLLENFK
YNLNMTKL
>Copia-103_AA#LTR/Copia 406-5448  [Aedes aegypti]
MENRVVKRFVAPAFKGDMKSYPFWKKRMEIFLRQEDLFYTLENSPEEENYFNPVANATPEQETERKQKLEKRLKDDGAAV
NEFFTALDDEALIHVMECTNAKEITKRLDEVYLPKGPVAMLGLRSRLYLLKNENFSSLQQLFTSHEEIIIQLNNMGEHIS
QEEQLNTLLVAIPDKFNYLLGALSVLRKEDLTQMSLQQVKRIFLDEDQKNADSRGNKMKPEAAFVGNNPRQKGKPGNRNK
KNYEKHITCFGCGKIGHRKQNCIEEKHRDQASLVEEVVEDVALLAASAIAPVTNDKQALPTASPTPKNVALLTTPEAPVV
NESAHMQETPSPIRSSTSGFKLSDMVPLVVTFDCPRILSPIPSTPKVSPRVVKIASPIVSPRVQNEQLSSLKVTVNSSTS
SSAGARRIVAVASPDASPEVQDEPVLPASINSSTSSLAGVQQAKGSAVTDNDSAELEAPKSTVPHTQTVHRQNGSFMVRI
PLDRIELCAIGKIRHDRGDPFCPKLKEAVTPPAPGPGAGRGRGRAPRRPPRGAPRPAPRRPGAPPPAPRAPARPRPRAAP
PARRPPPGAPARGPAGRPPPRRGRAAPRGAPGRRGAAARRRPGAGGRPGPGARARAARAPAARRAPRARPAPPARGGNQY
IRNMTMNDMPVKVPGVLPMYLDSGASRHMVREKRCFDELWDTKPVIVQTAEERTQLRGSREGNIRVKSKVGNKVFISTMY
NVLFVPNLSCNLLSVSQLESNGKSVLFQNGKVKILDKEGNIIAEGVKENGLYCLKFFLINSEENAHVSKEEQYELWHQRF
GHLGKDNMFKLIKNDMVQGLDIKNSSISTELCQPCLAGKQTRNPFNKNKESRSRRPLELVHSDVWGPSPEPNHDGSRYFV
SFIDDFTHFTRTYLISHKSDVFQKFQEFEALATAHFSLKITKLRTDNGGEYYSNEFIKFCKSKGIELTPTVPYTPQQNGV
SERMNRTLMDKARSMMHDKDVPESLWGEALFVSTYLTNRSPTIALEACKTPYELWFGDKPDVSKLKVFGCVAYSLVNQVH
RSKLDKRNRILGMVGYAHNGYRLWDKEERKIVISRDVVFDENKSYFQIQSESSRSKETSPVLVEFSDEPVELTQPDEDVE
RDVESDRSSDSDEDFQEALDPLDEEFEILNRRSGRLRRPPNWLSDYETGLIAGNGSANIPQNIRELMNRDDWNEWKKAIA
EEMKALHDNETWTLIQSVPDGRKAINSMWIFTIKNDTDSPRYKARLVAKGCAQSAGIDYTETFAPVAKMTTIRTLLSIAV
QYDLQIHQMDVKTAFLNGNLKEEIYMKLPPGEDGIVRTCQLKKCLYGLKQASRSWNERFDQIIISMGFTRLRSDSCVYIL
KDKNIYLVLYVDDMLIFGKDAKCIKWIKESLSKHFQMKDIGGVKNFLGLEIFRETGVLEVSQQSYVERILQNFGMENCKP
VSTPISTSGKWKRDEGILTTKPYKALLGCLQYLALMSRPDLCFSVNFFSQFQSSPSDSHWSGLQRILRYLQGTKTYRLVY
HRSTNEAPLTGYADADFANGLDDRRSTSGIMYTVFGNTVSWKTKKQTLVVLSSTEAEFVALCEASKEGMWLSNLLHEIGI
DVLPFRIHEDNIPCISIAEEPRHHQRTKHIDIKYAFVRELIKEKKIELNYIPTDFQLADIFTKALGEAKFSKFVSALNLK
K
>Copia-119_AA#LTR/Copia 177-4103  [Aedes aegypti]
MGDAKFAIPKLNGANWHSWKVRVEMLLAREDLWHVVEDDIPAEEEMSEQWKSEDRKARSTIILLLEDGQLSKVRNCVHAK
DAYNALRNHHQKTTRSVRVSLLKKICSTNLSDNGDVEKHLQEFDGIFERLDGAGMRLDKDTKICMLLRSLPACFDGLITA
LDSRTDDDISLEVVKSKLVDEYNRQLERKGGSTRVERAMRSDVRYSDGRPEKDTRTCHYCKKTGHIKRNCRKFLSTQKKD
GNSSRQDSDSYPKAKTAHGDVRGVAFTVGGESSSSWVIDSGASSHMSNDKXFFGSLREFSGGSITLADGQKTKIAGEGSG
VIHGVDGSGKVARIEVNNAKYVPGLSTNLISVTKLAEKNFRVNFDVNGCTIIDAEDVVVATGSRHGGLYYLRMAEGAMAA
SESVHKVDCQHQWHRRLGHRDWAAAERIIKEELATGIGVSDCGQRVVCECCMEGKSARLPFPPVVDRKSSRVLDIVHTDL
CGPMDIVTPSENRYVMTITDDYSRFAVTYLLKQKNEAAGNIKDYVRWVSNIFGRKPRVVRSDGGGEFDNRELRAFYKSEG
IQPQFTTPYPPQQNGVAERKNRSLIEMATCMLIDAGLEKRYWGEAMLTATYLQNRLPSRSIQTTPYQMWWNRKPDLSHLR
VFGSQAYVHVPDTRRKKLDSKATKLTFVGYAMEQKGYRFVDLETDQVTISRDARFIELENGTSSVEVTIPRSKKPEEEIK
LLPLKEKKEEKDDPFEESISAPEDLIETDDGDEVGEPVASSTVRRSERSNRGALPKHFDVYELDYVAGIAACAVEEPVGV
KEALADPVWRKAMEEELEAHRINGTWQLVKLPEGRKVIGSRWVYKTKKNEENRVVKFKARLVAQGYAQRYGVDVGEVFAP
VTTQATFRTFLTVAAKHNMIVQHLDIKTAYLHGTLEEEVYMRQPPGYVKAGNEELVCRLQRSIYGLRQSARCWNKRLHEV
LVKNGFKAAVADPCLYIRGAGKTKVLLLVYVDDLLLASTNATELKIIQEQLNAEFELTNLGEVRHFLGVEVRREGTVFKI
GLRNYIDGLLQAHGMNEAKPAKSPMDPGYLKLTDSGKSFDDPTSYRSLVGGLLYLAVVARPDIAASAAILGRRFSAPREI
DWTAAKRVLRFLKKTRSYQLQLGGAVDQPLVGFSDADWAGDAESRRSTSGMVFQFGGGTISWASRRQSSVTLSSMEAEYV
ALSASCQEALWLRQLLHDFGEDQDEPTVIMEDNQGCLAFVRSERTSRRSKHIDTRERFVQDLCAKKMIQLQYCSTDRMTA
DIMTKPLGPLKHQEFCELLGLKFAAEIPH
>Copia-122_SB#LTR/Copia 65-4393 via tfasty with Copia-41_SB, 3 frameshifts and 2 stopcodons. [Sorghum bicolor]
MVETGSSGGAGGGGHGDRGTYHYPQLTSTNYTSWSIRVQAIMEDQGIWEVVEPPEGTTTVQTAKQSGKDKTARAHLLxCL
PDDLLMQVAKKKTGKEVWECLKSRFVGADRVRDARLQTLKSEFDALRMREDESIDSYAGKLTAMSVRYSNFGGTLDDVAL
VKKMFDTVPERFIQVIAGIEQFYDLKNLVFEEAVGRLKAFEERIRPRAGKSLTDEKQVLLTQAEWEERQRKAGGDSSGRG
RSSEARRGRGRGRGRGQGGGRGNGQDRDGGSEAGKKDKSHIKCFKCKGYGHYANRCPGGENKEEAAHHARAEIERTLGLM
YAVAKVEQEKESREPVQQCQIGRRGAVNLTEEKVKPELHLTGGGESTGDSWYLDNGASNHMTGDPGKFMELDGGVTGNVK
FGDGAAVQIEGKGSILFKCRDGAHWLLRDVYYIPKLKSNLVSLGQLTEFGCKVEMDDDVLEVFEKNPRRLLLKVQRSSNK
LYRVDLKLADSECLMGSVEELEWLWHGRLGHVNFRTLKMVGDREMVGGVPVISQPDKLCHPCLAGKQTRQPFPKATNFRA
QQALEVIHVDFCGPITPSTVAGNKYFILFVDDHTRYMHVYMLKSKDQATAALVKYKAEVENAVQKKIKCIRSDRGGEFLS
AAFAGICEAAGIRRQLTVPYTPQQNGVVERRNRTVVEMARTMMKSMKIPGRYWGEAVRHVVYLLNRLPTRAVLEKTPFEM
WVGRRPHLGHRKVFGCLAHMKVTVPHLKKLSDRSQKTIYLGVEEGSKAHRLLDPLQNKVLVSRDVKFEEDVSWSWEQGNV
RMEEFYVEVDDTAVPTNLGEPSGAGEMPVEVGAEAVEEGSVGAGGDHMxSTQGENSPQQSEALPHSEGSGGVTEPASAQG
SGLIQNSPEGSGGQGDDSSNEEPGRFRDLNDIYDHTDVVELQYDSDGEALLAELEEPAKYVEAAGKPDWEEAMDKEIESI
EKNGTWELSKLPAGQKAIGLKWVFKLKKNAEGEVVKHKARLVAKGYVQKKGVDYEEVFAPVARIDTVKFILALAANRGWQ
IHHLDVKSAFLHGVLEEEVYVQQPEGYVVKGKEDYVLRLNKALYGLKWNMRLDRSLKKLGFKRCLSEQAVYTRGSGKDSV
LLGVYVDDLIVTGNDPTEIIKFKQQMTGEFEMSDLGLLSYYLGIEVDQKDEYLTIKQTGYAKKVLEQFGMGECNATKYPM
EPGLKLHEDKQGERVDATNYRKMIGCLRYLLHTRPDLAYSVGVASRFMEKPTVLHVKAVKQILRYLKGTTELGLVYTQER
KMEAITGFSHSDHGADVVGRKSTGGMAFNLNDSLISWCSQKQKTVSLSSCESEFMAATAAARQALWLRNLLSEITGKEQQ
VVTLYVDNNSAIALMKNPVFHGRSKHIDIKYHFIRECVERGQIAVRRVCTDLQKADALTKPLSAIKLATMRHLMGVRDLS
SHQD
>Copia-119_SB#LTR/Copia 57-4481 via tfasty with Copia-26_SB, 2 frameshifts and 1 stopcodon. [Sorghum bicolor]
MTTSSSAAAAMAPFAFGFLPPVSEKLTRSNYNMWLAQVSSTIRGAQLGAYILPGAAPPAQFLEGDTDPTTGKKGAPVPNP
AYERWVNQDQQVLSCLFGSLSKDVFSQVSTATSASALWAAIHDHHASQSRARIISTRMALATASKGTASVADFFVKMKGL
ADDMASAGKKLDDEDLITYILMGLGEDFDSVVTAVASRVEPYTVPELYAQLVAHEQRQELKTSGGGAHLSANSATRGGHV
QSSFPRGRGGGNGSRSGAGRGGGGRGRGKNFQPGVFCQICGKEGHPAHHCYKRFDNSYNGPPQKSASSATSSSYGVDTNW
YMDSSATDHITGELERLTMRNKYHGGDHIHAADGAGMEIANIGHSTVYSPNTNFHLKNVLHVPQSHKSLCSVNKLARDNH
VFIEFHSDHFLIKEQVTRRTLHRGRCERGLYPLHPSHSPHNKQSLSATKLSISLWHHRLGHASSRVIQQVLDRHRLSFTL
DSNNNSVCDACQQGKSHQLPYPKSVSVSKGPLDLIFSDVWGPAPTSVGRFDYYVSFIDDYSKCTWLYLIRHKSEVFQCFQ
NFQNLVERQFDRKILTVQTDWGGEYQALNSFFTRIGIAHHVSCPHAHQQNGSAERKHHHIVEVGHTLLAHGSVPLKFWDE
AFLVAVYLINRLPSRVIQNVTPYERLYGDPPEYNHLRVFGCAVWPNLRPYNARKLKFRSKQCMFIGYSNLHKGYKCLKPK
QGRVYISRDVVFDEHVFPFASLHPNAGARLRRDIELLPDILQNPSCVSRDTRTPDQCFASSIPSPSSSVSMLLTGENSGD
NVADSGAPGAPTPQHFMCPRLGHNAGGSTPPGEDSPAGTTSAGQTGSASALGSEVVATGNAASAGHATSHSSDLLGSSTA
SGRHTVSHSPSTPTTPASSPQPDPDAARGEGIRAASAAVPGGDTSTIQIASPDDTPPRRPVTRLQHGIHQPRIFTDGTVR
WGLHGSRISEEPASLDVALGDKNWKSAMDTEYQALMKNQTWHLVPRPKGKNIVGCKWVYKIKRNANGTIDRYKPRLVAKG
FKQRYGIDYEETFSPVVKAATIRLILSIAVMKGWSLRQLDVQNAFLHGILEEVYMHQPPGYTDSLHPTFVCKLDKALYGL
KQAPRAWYARLCKKLQTLGFVPSKADTSLFFFSNGEYTIFVLVYVDDIIVASSSSLATNALLKDLQAEFALKDLGDLHYF
LGIEVKRTPNGLILSQECYASDVLSRSGMSKCKAIDTSMSTSEKLSLGDGELLGADDATRYRSVVGALQYLTLTRLDLSY
SVNKVCQYLHAPTTVHWSAVKRILRYVCGTLKLGLKIRKSDSLLVSAFSDADWAGCVDDCRSTGGFAVFLGCNLISWMAR
KxATVSRSSTEAEYKALANATAEIMWVQKLLKELHIRCPLVARLWCDNLGAKYLSANPIFHARTKHIEIDFHFVRERLLE
IRFINSEDQLADGFTKPVPAVKLRQFKNNLNLASG
>Copia-100_GM#LTR/Copia 81-4393  [Glycine max]
MNEATYNNVESYLYLHPSENPATALVSPVLESTNYHSWSRSMITALSAKNKLEFVDGSAPEPLKTDRMYGAWRRCNNMVV
SWIVHSVATSIRQSVLWMDKAEDIWRDLRSRYSQGDLLRISDLQQEASTLKQGALTITEYFTRLRVIWDEIESFRPDPVC
TCNIRCSCSVSAIIGQRKLEDRAMQFLRGLNEQYTNIRSHVLLMDPIPPISKIFSYVAQQERQLLGNSSPNLTFESKEIS
INAARSICEFCGRAGHTENVCYKKHGMPLNHEARNKTYGGRKSCTHCGKMGHTVDVCYRKHGYPPGYKPYSGRTTVNNVV
TMNDKSMDDQTQHHEAQDSVRFSPEQHKALLALIQRPLTGSTASEQTKQVASISSCTTDRLPNPGMSSSIISSWILDSGA
TDHVTCSLNNLHSYEPINPVTVKLPNGHHVQATHSGIVYLSKTITLFNVLYIPTFTFNLISISKLVSSTDCALIFSSTSC
MLQDTNTRMRIGIVEERHGLYHLIPDQNDKAVYSAIVHPKCNIIPVDLWHFRMGHLSTERLQCMKPYYPILKHDRNFVCN
TCHYAKHKKLPFSSSISHALHNFDLLHMDIWGPCSKISMHGHKYFLTIIDDHSRFTWVHLMHSKAETRDIIINFITSIET
QYNQKVKIIRSDNGSEFIMTNFYASKGIVHQTSCIETPEQNGIVERKHQHLLNVTRALLFQANMPSSFWNYALLHAAYLI
NCIPTPFLHNISPYETLHGHIPNISHLRIFGCLCYAGTIKANRKKLEPRAHPCIFIGFKPNTKGYMLYDLHSHSIITSRN
VVFYENHFPQIINTQPSCMEPSTILPEPFSNNPCEPTAETTQHPVQEPIDQTLKATSPQPRRSTRTKQTPTYLRDYHRDL
SSHDTNASTKVRYPLSSVLSYSRLSPTHKHFVMSITSTVEPSSYAEASQHDCWIKAMQAELDALQSNETWRLTPLPPHKT
AIGCRWIYKIKHRADGSIERYKARLVAKGYTQMEGLDYLDTFSPVAKLTTVRFLLAIAAMNNWHLRQLDVNNAFLHGELD
EEVYMQVPPGLTIQNPNLVCRLQRSLYGLKQASRQWFLKLSSLLTTHGFQKSQSDHSLFLRFTGSITTILLVYVDDIILT
GNSSSEIQEIITILDQTFKIKDLGNLKYFLGLEVARSSNGIHLSQRKYTLDILSDSGMLGCRPNTTPMDYSTKLHTTAGT
PLSDAESSSYRRLVGRLIYLTNTRPDIMYAVQQLSQYMSSPTNMHLQAAYRVLRYLKSTPGSGVFFSATSIPQLRAFSDS
DWAGCQDSRRSITGFVVYFGSSLVSWQSKKQNTVSRSSSEAEYRALASTTCELQWLTYLLQDFRIQFIEPATIYCDNRSA
IQIATNPVFHERTKHIEIDCHIVRQRVTSGHLKLLPVTSSLQLADIFTKALPPATFQTLCTKLGMLNIHSQLEGGILA
>Copia-97_GM#LTR/Copia 173-4306  [Glycine max]
MASDSQKTDGPAFSISGTPTITSEKLNGKNYLAWSASVELWFLGQGYHEHLEQSSEKISEDKREQWKKLDYQLCALLWQS
VEPTILTNFRAFKTCYSFWKKAQSVFANDIQQLYDAAQKLATLKQTDHDMVAYVSKAQSAVEELKLSLEADKLEDIKTKL
DNLYMVLVLRGMHPDFDHIRDQVLTGQEVPSLENLITRLLRVPSPKIGGNSVDSIETSAMVSNRGGRGGRGNRGGRAGRG
GRPQCSYCKRVGHTQDTCYSIHGFPEKSVNISKSETSEIKFSKADYQEYLRLKAAKESQTSSAISGHNSTACISQSGNNQ
SPWIIDSGASDHIAGNSSLFSSLSPPKIPHFITLADGSRVAATGIGHVSPTSSLSLNSVLLVPGCPFNIISLSQLTRSRN
CSVTFDANSFVIQERGTGRTIGVGHESHGLYYLKPNLSWVCSAATSPKLLHERLGHPHLSKLKIMVPSLEKIKDLFCESC
QLGKHVRSSFRHVESRVDSPFSVIHSDIWGPSRVSSMGYRYFVTFIDEFSRCTWVFLMKERSEILSILTSFVNEIKTQFG
KTIKILRSDNAKEYFSSAISSFLSAQGILHQSSCPHTPQQNGIAERKNRHLVETARTLLLHANVPVRHWGDAVLTACFLI
NRMPSSSIKNKIPHSILFPKEPLFHVDPRIFGCTCFVHNLSPGLDKLAARAIKCVFLGYSRLQKGYRCYSPVHNRYYISA
DVTFFEEKPYFAPSMVESNTLQEVFPIPYLGPSPSLQESESTVDSTIDIPDNPPLEQTQRSPIVYRRRPRIPDAELEGNE
RPAESCPTPADNPTMDLPEENLDLPIALRKGTRSTRNPYPIYNFLSYHRLSSSYHSFVSSLSSVSLPKNLREALDHPGWR
QAMIDEMQALEHNGTWELVPLPPGKKPVGCRWVYAIKVGANGQIDRLKARLVAKGYTQIYGLDYGDTFSPVAKITSVRLF
LAIAAIRHWPLYQLDIKNAFLHGELEEEIYMEQPPGFVAQGESSLVCKLRRSLYGLKQSPRAWFGKFSSVVQAFGMKRSE
ADHSVFYCHTSSSRCVYLVVYVDDIVITGNDQEKIAQLKEHLFSHFQTKDLGKLKYFLGIEVAQSKDGIIISQRKYALDI
LKETGMSDCRPIDSPMDPNQKLLPDQGEPYSDPERYRRLVGKLIYLTITRPDISFAVGVVSQFMQSPHNDHWDAVIRILR
YIKRTPGQGLLYEDKGNTQIVGFCDADWAGSPIDRRSTSGYCVSIGGNLVSWKSKKQNVVARSSAEAEYRAMAVATCELI
WIKQLLQELKFGNTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKVLSKEVITEFVSSNDQLADIFTKSLRGP
RIQNICSKLGAFDLYAPA
>Copia-96_VV#LTR/Copia 52-4422 via tfasty with Copia-56_BRa, 74.7% SW:3764, 3 frameshifts and 2 stopcodons. [Vitis vinifera]
MARGGQHNNDNRFQPLTSPTSGSTATQSDQSLMEDTNSPFFLHSGDHPGLVLVSHLLTGSNYNTWSRAMLMALNAKNKLG
FVDGTLSQPTTDDPTARIWTRCNSMVTSWLLNAVSKEIVDSLLYLESAHDVWADLHERFHQSNAPRIFQIKQQLHGLSQG
SLDVNTYYTRLKILWDELKNYQPVPVCHCGGTKAWMDYQQQEYVMQFLMGLNESYASTRGQILMLDLLPPVAKVFDLVVQ
EERQRSIGSRSSAPSDSMAFNASSPASSVATASSHNKPRRERPICTHCGLTGHTVDKCYKLHGFPPGYKPKGKAQTxMAQ
TSPLQSQSTSPSSFTEPLKGIHYFPSAAAATVGSSPPPVSLSSDQVQQLIAYLSTHLQQQTIDPLESPSTSGPSISQIYG
NNCSTQFFSHPFVPSDAWVIDTGATHHVCCNVSLFSHSRPVHNTTVTLPNGHAVAINRVGSVRLSDTLNLDNVLFVPMFN
FNLLSISALTLSHNCSVNFLSNSCVIQDLTRGLTIGKGRRRKNLYFLESGNEFCNSVFTNSVMSKSDIWHFRLGHPSHVK
IQILHNELHIPNSLSHLSSHCKICHMAKQKRLPFVSHNNMSANPFDLVHIDVWGPFNVSTPVGHRYFLTIVDDCTRATWV
YLLCAKADVLTVFPEFFNLIPTQYGTEIKSVRSDNAPELAFHDFFRTKGVIPYHSCVDTPQQNSVVERKHQHILNVARAL
LFQSRVPLCYWGDCVLTAVYLINRTPSPLLSNKTPFELLNNKKPTYSHLRIFGCLCYASTLSNQRTKFAPRARASVFLGY
PLGYKGYKLLDLETNKIYISRNVIFHESLFPFAHSAVSNDVVDLFNDRVLPKPIQSISEPSCSQPNMSSSHSPECISSPA
PIQTTLRPRRVTTKPAYLSDYHCYLTEHVSSKPSLYPISSCLSYHKLSRPYHEFVLAISSQTEPTSFSQAVESQVWRDAM
NIELQALESNDTWSICSLPIGKQAVGCKWVYKVKFRADGTVDRYKARLVAKGFTQQEGIDYLDTFSPVAKLVTVKMLLSL
AAIHGWSLTQLDVTNAFLHGDLMEEVYMSLPPGYTRREGEHLPPNAVCRLHKSIYGLKQASRQWFHKFSNALLSEGFVQS
TSDHTLFTKHQDTSFLALLIYVDDIVIASNDQLVVDTLKHALNCKFKMKDLGPLRYFLGLEVARSTAGISICQRKYALEL
LSDAGHLGCKPTTIPMDPNLKLSQDDGDLIEDPTSYRRLIGKLLYLTITRPDLSYSVNRLSQFLAAPRKPHLQAVFRILQ
YIKRTPGQGLFFSSNSKVQLKAFADSDWASCPDTRRSISGFCVFLGTSLISWKSKKQPIVSRSSAEAEYRSMANTTCEIL
WLLSLLHDLKIAHHGPAVLYCDNQAALHIAANPVYHERTKHIEIDCHIIREKIQAGILKTLHVTSxNQLADILTKALHPS
QFHGLLGKMGIHDLYSPS
>Copia-98_VV#LTR/Copia 38-4204  [Vitis vinifera]
MTSSQMIPSNSISSSAHHTFSVKLTPRNYLAWKTQFNHLLNYQNLTRFVDGSTVAPLKTIKDSSTPPVEIPNPEYETWYK
KDQMLHSWILSSLSEEIFPYVIGLSSSYEVWQALSQAFGSVSQNRQLQLHIELQELKKNDLSVSAYLQRAKALADELNAA
GRPLAPTEFNAIIYRNIGSDYHAIITALNLRSEPVSFHELHGQLIAHEILLKSSTDLPQANMVTCQSNSAPLLPTPSQNN
NHKKSSNWNGNQPRGPCQICGYRNHTADRCRRRYSRYNSHNQNATPHANYSSAGHSQNNCASSQVPVANYTHGGSTMPWY
PDTAANYHITPDLANLSIAHDYNGHDQLHVGNGQGLQITHTGITSLPSSSGSLSLKNVLCVPQIVKNLLSVQKFATDNSC
FFEFWPSYFLVKDQVSKKILLQGPSEDGVYTFRPNVKQAFTAEAPTMDEWHAALGHPQRRIVSSLIKQFHLPCSSNSSSL
CSSCILGKHARLSLGSVQHKSTAPFQLIYSDVWGPAPLLSSLGHRYALIFIDDYSRYTWVYLIKNKSDVYSVFLQFEQFI
HRQFNQKILAFHSDWGGEYRKLNTYFKQVGIVHRLACPHTHEQNGVAERKIRHLVDTSLALLAHANLPLRYWNYAFEMSC
SSINNLPTPVLNNSSPYFVLFHKHPDYSTQKPFGCTIFPLLRPYNNHKFAFRSTPCVYLGPSPSHSGSRCLNLSNDRVYI
ARHVVFNPSLFLYRSHIAASQAPKDSSNFPWLHIKSVPPSSTGSVGNSGQTSTPSNIPLFSTTDQSSNNSLLSAQSPPLT
TPPSSHSPIPQQSPSSDSTTDPPLSLIVDLTHYPAQLNAVSSTSTSPPRIHPMQLRSSTMQKRHACLSTKAKNYLITEPQ
TFTQAKPYAEWRDAMQSEINALLQNHTWVLVPRPPAANIIGSKWVYRIKRKANGEIDRFKARLVAKGYSQQPGIDYTETF
SPVVKATTIRTILSIATSSHWPIRQLDISNAFLHGFIDSDIYMEQPIGFQDSSHPDYVCKLSKSLYGLKQAPRAWFHRLT
SFLQDLGFQASKADSSLFILHQGALKFYVLIYVDDILLTCSDSTKLDWFLSKIKSTFPVRDLGSLHFFLGIEAQFSADGL
LITQRKYITDLLANSNMSECKPCHTPMSTSPPLSKLSGDPLSNAEQYRQVVGSLQYITLTRPDISFSVNKLSQFMHQPTQ
EHWTAVKRLLRYLKATVGFGLFFSKHSTLDLQCFTDSDWGGCPDDRRSTNGYAVYLGKNLISWTSKKQPTIARSSTESEY
RALANSTVEIMWLRSLLSKLGFSSSNPATLWCDNVGAIYLCSNPVFHARTKHIELDYHFIREQVQQRNIQVRFISSDDQI
ADILTKPLGQCLFVKHRDKLRLCSSPPSA
>Copia-99_GM#LTR/Copia 897-4871  [Glycine max]
MQIVLGCMDLDLALRIEKPPSPTDSSTSEQRKLHEKWDHSNRMSLMIIKRGIPEVFRGTVSDDITSAKEFLAEIEKRFAK
SDKAETSTLLQNLISMKYQGKGNVREYIMGMSNIASKLRALKLELSEDLLIHLVLISLPSQFSQFKISYNCQKEKWSLNE
LISYCVQEEERLKQERTESAHVVSTSKDKGKRKRTEEPKNEAAKGPAQKKQNQGDNCFFCSKPGHVKKKCTKYHAWRAKK
GMFLTLVCSEVNLASVPRNTWWLDSGATTNISVSMQGCLSYRKPIDSERWIYVGDGKSVEVEAIGHFRLLLCTGFYLDLK
DTFVVPSFRRNLVSVSYLDKLGYLCSFGNNVFRLSFNSDIVGTGSLLVNDNLYLLDTVASYGESFNAELRGTKRRIDNTN
SGALWHKRLGHISKNRIERLVSNGILDSIDFTSFDVCVECIKGKQTKSKKLGAYRATDVLELIHTDICGPFHTPSWNGQQ
YFISFIDDYSRYAYLFLIHEKSQSLDVFKTFKVEVENQLNKRIKCVRSDRGGEYYGRYDGSGEQRPGPFARYLEECGIVP
QYTMPGSPSMNGVAERRNKTLKDMVRSMICHSNLPESLWGEALKTAAYILNRVPTKAAAKTPYELWVGRKPSLKHFHVWG
CPAEARPYKPNERKLDSRTVSNYFIGYSERSRGYKFYDPKLKTIFETGTATFFEDIEFGGKNKVRDFVLEEESVTIPEPI
HTVAFDKANSEPLQDIVIESPTQDNLVVHEEQTQDPQEPMLHEPVPLRRSTRERRSAIPDDYVVFLQEHEENNGMMEDDP
VNFHQAMQDSNSEKWIEAMNEEYKSMQDNKVWELVPLPEGVKPIGCKWIFKTKRDSKGNVERYKARLVAKGYTQKEGIDF
KETFSPVSSKDSFRTIMALVAHYDLELHQMDVKTTFLNGNIDETIYMVQPENFVSGDPKNMVCKLTKSIYGLKQASRQWY
HKFHQVILSFGFEMNLVDDCVYHKFSGSKYIFLVLYVDDILLATNDIGMLHETKRFLSRNFEMKDLGDASFVLGIQIHRD
RSRGILGLSQRSYIEKVLKRFGMQECKSGDTPVAKGDKFSLKQCPKGNLEIQEMQKIPYASAVGSLMYAQVCTRPDIAYI
VGVLGRYLSNPGMDHWKAAKRVMRYLKRTKYYMLTYKRSDQLEITGYSDSDFAGCLDSLRSTSGYIFMLAGGAVSWRSAK
QTLTTSSTMAAEFVACYEASNHGIWLKNFVTGLQIVEGIERPLKLYCDNKSVVLYSNNNRSSTKSKHIDIKFLVVKERVQ
SGQISIEHLGTNSMIADPLTKGLPPKVFHEHVAHMGVLQFEESLV
>Copia-99_AA#LTR/Copia 144-4141 via tfasty with Copia-112_AA, 1 frameshift. [Aedes aegypti]
MADPGKFAISKLGNTNYASWKFQMEMFLIREDLWHVVADAKPEPVTDAWNKADRKARATLGLCIDESQYVLIKDSVSAKA
VWDALKAYHEKSTASSQLSLLNRLCDAKLSENGDVEKHLLELDSLFERLVNAGLELAEKLKIAMVLRSMPESYHFLASAL
EARPDADVTMQLVRSKLMDEYHKRQERSGKSSSGEQVLKTQKVNKEKLCFFCKKPGHFKNDCRKWQSVKEKNSGEGLSGV
KPGGSGQQPAKAKQVKNPEINSVCFSAHTEGEAICAAAKVDRLWTIDSGASCHMTSSEGFFNELEKSSVTVVMANGNCSE
SGGIGCGSLKSVNGTGEPVDINLDKVLFVPNLDGGLLSVSKMADKGYSVLFTKNSVEVRNASDTVVALGERRGGLYFLKE
PERVAVANIQCHTVNCQHTWHRRFGHRDPAVFEKIQKEDLATGMKLVNCGTKIVCEPCMEGKMARLPYPQQAERKSTQPL
QLIHTDLCGPMSNVTPGGKRYFLTLIDDFSRYVIMYLLTDKSEAKHCIMSFVRMVENKFGRKPQIIRSDRGGEFVNRELE
QFYREEGIQMQLTAGYAPQQNGVAERRNRYLQEMAVCMLLDANLDKKYWGEAIATAAYIQNRLPSRSVAKTPMELWCGEK
PDLSRLKVFGCEAFVYIPDAKRVKLDSRASKLLFVGYACGSKAYRFLDKQTNKIVISRDARFLELGSQLQEELPAGAKDQ
KPADAEVVPQRNTDRLVSIESVSAENESIDEESECEGFVEEDSDDDVFYGADAEDPDGDQAEPGRPQRGNAGVLPARYQD
FVVGVAKMDDPEPKNYREAVNSACSDKWIKAMNDEYKSLLSKGTWSLVELPKGRQAIGSKWVFKKKKDSCGQVVRHKARL
VAQGFGQRYGSDFSEVFAPVSMPSTFRVLLALAGHKKLQVRHIDVKNAYLNGRLSEELYMRQPPGYAVPGKEELVCRLHR
SLYGLKQAAHVWNATMKKVLLSLGFKQSDSDACLFAKQLDNGEWIYLLIYVDDIVVVSGDERQMDLLENQLSKHFEISSL
GPISQFLGIKVEKSSDGFYSLSQKAFINEIAERHGLDKAKTSKYPLDTGYMKQADSEPLADNVQYHSLVGALLYLATNTR
PDIAAAVSILSRSSSRPTQRDWVELKRVVRYLIGTGDLVLRLGLKRGDGLTLTGYSDADWAGDTSDRKSTSGFVFMLGGA
AISWGSRKQNCVSMSTMEAEYVALSEAAQEAVWLRRLLCELGAEQRQPTKINEDNRSCIDFVSLDRQNKRSKHIDTRQHH
AKDLCSKGVIQLAYCPTDRMMADIFTKPLGPQKINQYVADLGLAKVNRDRFVQ
>Gypsy-17_DR_gag#LTR/Gypsy 85-1803 [Danio rerio]
MEIVHAENICIRNAVIISGLTHTERDDEVLKHLSDYGSIERLIRIDEPKTEFHGQIIVEFKNDSAMQLLEQSLPTAFQSP
TSSDVTYTIKSLTSVYTPAASSSATHTFIEGLREISKVTGKPLEELLQDELAKLTASAVSPPQTESEFLTTESDPEGSQK
RVVEPTQTTMVSAHGDVTPSNESVIFQTKSNNSLPQISASPSRLNADMGTPLKLTVSDVTPAEVQRLVVEHIVRSDTPSH
SLTTMRLRPFSGKPSYSANEIDYDTWRTNIEFFCTDSTLTDAQRSQRILDSLLPPAADVVKHLGPHSPPSDYLELLESAF
GTVEDGDELFAKFMSTFQDAGEKPSQFLHRLQKVLSTAIKRGGVSAADRDRHLLKQFCRGCWDNALITELQLEQKRKNPP
AFSDLLLLLRIEEDKQSIKAVRMNQHLGAAKHSATPPRRVVTNLHSISAACSAVKHDEVEDLKRQVVELQNQIASMKPFK
KCKEFKPKEPSVPSKSAKTFSPKPSKGTNPQPNKSAKPRPWYCFNCGEDGHIASRCETSPNPSLVGAKNRQLKEKQLQWE
VCDGVPDPNDLN
>Gypsy-17_Crp#LTR/Gypsy 111..4238[Crocodylidae]
MDTGQQTLHLVAQLLQQHQQTAMRQMNVQEHMLQQQARXGLYPGEFNMPRMTKEDDVEAFLESFERAALAAGIDRAKWAG
RVGVLLVGPAQAAYRALSRSEAVDYDKVKAEILQRLEITPEKHRQAFREAKTRNERSPKMLWQFLADELAKWLRPAEATK
EEICDQVLLEQFLADLGENTQRWVRCHGPTTSRQALCLAEQYEAAQKGLRLDRGMSGREGPPKKGKGGKNERTPERRDFF
CFRCGGRGHMARVCPVNPDYQPAKGRQYPGGSGREREPTREEPMECGVCAGVGASPQPLPKVRAWVGQRPLTAVVDTGCA
QTLVRPSMIEWRQAPRCAGIHLVCLHKQRSYFERRVLDVRVQGTSRRLPVGLSEEILYPMILGRDWPEIFEVLATLRPQD
KPLGGLAGGEVERESDEKLEDLASGSQFREAQEEDVELQPFREEAVTRPRLQVSPSASRAKGPRVEIRRGLLYRIKPGQR
AEEEVEQLLIPRSYRAPLLRLAHGNPMGGHLGKRKTEARLTRWCFWPHLYEDVENFCKACEKCQKVSANKPPRAPLQSVP
VVRDPFARVALDVVGPLPRSAAGHQFILVLIDYATRFPEAVPLRAVTGVKVAEELMKWVTKFGIPREIITDQGSNFMSAV
VAALCKVLRIHHLKTTVYHPQANGLVERFNATLKGMLRRCTQEDPQRWDSLVPPLLFAVRDAPQASTGYSPFELVFGHRP
RSLLDIVREGWEDDGRVGHKAAEYVQDLQERLRLARKTAHDNLAEAQRQQKDRYDRGTKERELQPGQKVLVMLPSANSKF
ESRWQGPVTVVRRVGPVDYEVRREGRRRKTQVFHVNLLKEWQEPQGLLLETDWEAEEQETQGRDPSPGPPRDVPGAEDRQ
LRDGQERQLRELIHEFRDVFTESPGKAKGVEHAIVTKRGQVARERWRRIPFYRRQPIKEELERMLAQGIITPSRSPWRSP
LVAVTKPDGSLRLCVDFRKLNAITQFDAFPMPQVNELVERIGQANFISTLDLSKGYWQIPLRPEDQPKTAFGTPWGLXEF
KRMPFGLNGAAATFQRLIDWILAPHQEYAAAYIDDIVVYTQTWEQHVKALRAILRELRRKGLTANPKKCALGKSETKYLG
FLVGNGQVKPLRDKVEAIRNYEAPLTKKQMRAFLGLASYYRRFIPQFAEVANPLVETTRGREPHKVKWTPERHRAFEELK
KALCQEAILHTPNFNVPFTLQTDASAYALGAVLTQEVDGAERPVAFASRKLNDNEQRYSTIERECLAIKWGIDYFKYYLL
GREFRLVTDHAPLRWLNSTKTENARIMRWALALQPFQFQIGYKPGRTNTVADFLSRHGGTGPQPEPQKEAPPLRKGQDGG
GDGQSKEAPSGVLRGG
>Gypsy-17_NV#LTR/Gypsy 35-3976 [Nematostella vectensis]
MAQQMVQSIPVPTYTGVGDIEGYIERLECYFELMKTRTESRVPLLLCGLTAGQYQTLRDLVAPEVPKEVAYDTLKGRLIE
HYGSVRNTRLERAKFRALRRDEKESVADFEVRLRNAVRYCEFTGEILNENLVEQFISGINHPGIERKLLQKGSSLKLSEA
VQEASAFLLLDAKSGREGQSDTPVSVSAISKGNAVVCFRCGKRGHVARDKSCKAVGKKCNDCGVVGHFAKSKFCRLVRPE
NNSQSSRVRNGSRSRRGGRANQITDEHADTKQEKAVTHLFSVEVRNVKEAPTCEAEIRGMVFNFIIDSGAAANIVSNQLY
NKIKRDVVLRKTTKKLFAFGQSVPLKLKGEFEAEITVNDNKALAIFYVFNGKASVNNLISNKTANELRLLHVNSVTGQKC
HASLETEIKSKFTQCFDGVGKLKGTKVKIHVDPDREPVAQPVRRLPFGYRDKVATLLERLEAEDIIESVEGVGSRWVSPI
VVVPKSDGDLRMCIDFRKVNEAIIRERYPIPTMQEMLAALNGSKVFSKLDLKQGFFQLELDKESREITTFVTHVGLFRMK
RLGMGISCAPELFQYTIQKVLAGLPGVLNLADDIVVFGKDERQHKERLLSVMSRLSESGLTLNPGKCQFGLSSITFLGHV
ISDNGVSADPGKVEAIVNARAPMNVSELRGFLGLVQYVGRYIPDLATLSAPLRALTRQSVPFEWTQKQEDSFRDIKRLMS
ASETLAYFDRESETTVIADASPVGLGAVLVQRKAGENRVVAYGHRSLTDVEKRYSQTEREALSLVWACEHFQMYLLGTKF
KLITDHKPLTHVFNNANSKSTPRLERWSLRLEPFDFELQYKPGESNIADPMSRLSRGPRESTKVDDTGDYIAAVVREAIP
IAMSWEEIKTSSDNCDSVENMKEALKTGKWDKCAASVKSVRGELSECDGVILRGNRIFIPSDLRDRVLKLAHEGHQGIVK
CKQRLRSKVWWLGMDKDVESMCKSCELCQLVSSYDPPVPIVTTEMPKGPWQFCSTDLLGPLPDGRYVIVIIDYFSRYFEA
AMLRSTKAENIIEFLDATFARYGYPEVLRTDNGPQFISGEFQTFLRAGGVKWLSTTPLWPQANGLVERTNRSILKVLKIA
TQEKADMQREFRKFVAAYRSTPHTGTGCTPFSLMFGREMRTKLPQLDFTASDPELARDRDREYKLKLKKHADKKAKESEI
KEGDTVLMRNEQQGKLEPNFRPEKYKVVSKNGSDIVCESETGGTLRRNVQCAKKVPEATSEEVSKENQGNPELIQDPIES
NPPVDQPPEPPSIRTSVRARQPPARLNDYLVYQ
>Gypsy-18_BG_gag#LTR/Gypsy 34-1173 [Blumeria graminis]
MSSNPGNQEAPGQEQRILEEIAGISDVSQFVKGVQTDPAVVIDAIKALKIRNEEAEAELESARRRIKKLEKKPTTPGNVN
SQSVNEDWMSRLVVALEGRNTVRSALLPDAHIFSGTRKDFFNWKELIMMKIKGNLDHYPTEQSRMIYVYSRMNSESRTHL
QNWVQDGSLLFPTLAHMMDQLTIIFGDPHRARDAASRLHSNAQKNKSFGTWIAEIRRDAAIAGYEGNSRYLRDLVLNKMN
LELKKALVHERDIEYLDFDEAASRLQDIENRLRSCANAEFRPSLRSGGSTQSFAYPEPATHAISPRTVDDPMDLSATMPQ
KRGNLSQDERERRRRLGLCFYCGEIGHRSFDCNKKSRPAVQARVMEMDKIEDDTLPSGKD
>Gypsy-17_NVi_env#LTR/Gypsy 6613-8085 [Nasonia vitripennis]
MERQQEPDTTTEEEERLLLEVDSDDAITIDSDIEVLSLPPPSPADVGEPGPGSPPRRGESPEDDFDFIPRENADNGAAPQ
QQAEDADEVNSTATTPRARSPDNLSDRMEGDFDQQLPASPEPEPIEEEETNERPEDIQRRKEIERLRRMVKEQTPDNPLL
PLLGHEEEVAEFFYENPPILSAFNKVIKNIVEKVRQRPCILRGSSLCIGKPEVLPRAPRRSTMIYELNPAVDQDTQTIAV
PQVSSGTQTTLREPAQPLRTSIATQTPQLNFARPSLVSTATQTRPENLAGSLQASTSVQIQAEVHVEAVAPEHPPELSTE
IQTPPTTPNETASERPFPPRNEQATENDIENAGANAIVDTPMEVEPTTPPAQAISGRRAGDPTLTGWMRINGRDVNVLPS
LPGCFNCSRRHHYRNCPHPATVFCYRCGRRNVTVRDCPHCAPGWREEGPYIRRLRTHVPRDQPLPPREGLDELQQFSQRP
RHTFTRMEPY
>Gypsy-17_AMi#LTR/Gypsy 77-4201 (old Gypsy-20_AMi identical; Gypsy-36_AMi product 87% identical)[Crocodylidae]
MQPSGVAQVDLLTQAVQAIGQLLAVQQLQGAHQQEWMQRNAALFRMPRMTKDDDPEAYIEAFERTAIQTGLDRSQWGHQL
GALVIDEAQAAYRALSREEAQDYEAVKAAILYRLEISPESYRQAFRARKPRESKRPRGLLQTLRDALQKWLPAGKFDRAG
VLDQILLEQFLWDLEEDTQRWVRRHQPRSSEEALRLAEAFSNSEKERGSGRGFRVSRESSGSEAESRAAPRKGAPKGVVC
YKCGRTGHISRDCGMGLSELSRGPVGYLPTREKGRETGTGEPMDCSVGFTSPEEGWNRPMVTAWVGGRAVRAMLDTGCSQ
SLLRADLAPPGGRREAGIINMTCILGGEMQFRCCYVPVRVMEFRGELRVGLAPALACEMILGREWEPFYRVLERVRATEE
ERRRIKRMEGWAAENSEPSRREGGEGISVESLVSAAQFRQAQREDQELQRLRTSDPGEGTSRRQEGFEVIGGLLYRVQRE
EGGELKGRQLVVPSPLRHLVWRLAHASPLGGHLGRTKTRARLAQEFFWPHLREDVDRWGAACPECQRAQEWGPPKAPLRP
MPIIETPFSRVALDVIGPLPKSHNGYQYILVLVDYATRFPEAVPLRSITAPKVAEELLKWIARVGIPQEILTDQGTNFMS
GVMKALCKTLGITQLRTSVYHPQTNGLVERLNGTIKRLLRRCAQEDPRRWDTLLTPLLFALRDAPQESTHYSPFQLVYGH
SPRGLLQVVREEWERPMGLGVSAEGYRRELQDRXQKAQRIAGHNVREAQERQETHYNRRAKARTFQPGDQVLVSIPTTSS
KQLAMWQGPFTVIRQVGPVDYEVRKPGHRREQQVYHVNRLKEWKTPQGWMAQEKAGEGDLGPLCPGLGRAAPEEAVHLSN
ELNSRQRQELLALVEEFHEVFQESPGRTASIQHEIRTPPGTLVRERWRPIPQQWQQEVRREVSKMQEQGIIRPSRSPWRS
PIVPVAKPDGSLRLCIDFRKLNALTTFDAFPMPYVSHLIERIGEARYISTLDLAKGYWQIPLRPADCAKTAFGTPWGLFE
FVRMPFGLNGAAATFQRLMETLLAPHAAYAAAYIDDIIIFTSSWEQHLGALRAVLGELQTAGLTANPKKCKLAERETAYL
GFRVGQGTIRPLSDKIRAISQFPEPRTRKQLRSFLGLVNYYRRFIPHFARMAAPLTDALAGASSARLIWTRGMRDSFHRL
KEAMRQDVIMHTPDFNAPFILQTDASGRALGAVLLQKGKEGERPIAFASRKLSHTETRYATVERECLAIRWAIEYFQYYL
LGKEFLVITDHAPLQWLTRKQSTNARITRWALALQPFKFTVVHRPGKDNFVADFLSRWEDPDRFGEPDHYHGEENXGRRD
ARRTTQTPQGDLRGE
>Gypsy-16_DR_pol#LTR/Gypsy 1971-6775 [Danio rerio]
EKTQVKGATSPVGYPTSSNHESFKLRTVSVEGHTETKRNNNCPEKRKQLFNQNACDAPPLRNLPRGLVGVKCTAQITVGN
KRVSCLLDTGSQVTTVPWSFYQENLSNCPLKSLDNLLEVEGANGQTVPYLGYVELTLKFPREFLGTETEVPTLALVVPDL
MNTPQVLIGTNSLDALYSNYVQQSASFPQSNFHGYRAVQKVLEARYKQASADVVGCIKFKGHVPEVVPAGCTVVLDGHVL
VNCPHVGKCVALESPTSPALPGGLLVASCLHSLPSKRHQQLPVVLRNETQTDITIYPRTIIAEMRAVQEVIKSGQVNSST
VNKELSACSNLKFDFENSPLTPEWKKRITDQLNSMPEVFALHDLDYGHTNKVTHRIKLNDETPFKHRPRPIHPQDIDAVR
KHLQDLLAAGIIRESESPFASPIVVVRKKDNSVRLCIDFRKLNSQTIKDAYALPNLEEVFSALTGSKWFSVLDLKSGYYQ
IEMEEADKSKTAFVCPLGFWEFNRMPQGITNAPSTFQRLMERCMGDLNRKEVLVFIDDLIIFSESLEEHESRLMHVLKRL
KEYGLKLSPEKCKFFQTSVRYLGHIVSENGVETDPVKIEALKTWPRPRNLKELRSFLGFSGYYRRFIQDYSKIIKPLNDL
TVGYPPLQKRHLQENKNKQYLDPKKEFGDRWNQPCQQAFDMIIEKLTSAPVLGFADPKLPYVLHTDASTTGLGAALYQKQ
EGQMRVIAFASRGLTRSESRYPAHKLEFLALKWAVTSKFSDYLYGTEFVVVTDSNPLTYILTSAKLDATSYRWLSSLSTY
NFKLQYRAGSQNCDADGLSRRPHGELLDDPASQKERERIKQFTLHHLDEFGVEDSLILPEAIKAICDRHQIGNSSHKCKF
SNPSIALVESLALHADVLPNEFEQENEHGLPVIPYLSNEELKRQQRMDPDLKFIIDCLQRNEKPSSSKDQSLAVTLWIRE
WSRLELRDGLLYRKKQDQESTHYQLALPVALRGTVLKSLHNDMGHMGMERTLDLVRTRFFWPKMSSSVEEKIKTCERCVR
RKAFPEKAAEMMNIKTTRPLELVCMDFLSLEPDQSNTKDILVITDHFTKYAVAVPTRNQKAQTVARCLWENFLVHYGFPE
RLHSDQGRDFESSLIKELCLVAGIHKVRTTPYHPRGNPVERFNRTLLQMLGTLENKKKSCWKEFVKPLVHAYNCTRNDVT
GYTPYELMFGRQPRLPVDLAFGLPVDRSTKSHSQYVKDLKEGLRESYEIAIKNSAKVAQRNKRRFDKHVVVSTLDVGDKV
LVRNLRLRGKNKLADKWEPDVYVVIRKAGDLPVYVVQPDGKTGPVRTLHRDLLRPCGYLSENEIEEMSPPNVQRKPRTRS
SSALEYAPKEHQMSDQSESEDDSLYIRNAGRQLESITTTVLPSSQSPVLVRNLPGIEPIEPLPVVVNPEKETLPDSRLEE
DLTENQRDDVNENFLPVLNPADIDPKEIEPERSGNSVEVQIHRRALELDPVDVPHSNDQNPHVRNVSSNQPIVDEDLDTS
GPRRSKRQCRPPNKLEYHKLGNPLTLVIQSLLQGLSSAFTTSLEEPILTRDQPFVVPDPFPIAVTTQPRTCPRTCLNSGG
E
>Gypsy-16_DEl_gag#LTR/Gypsy 326-1309  [Drosophila elegans]
MAVQQLSEIHLNQLLGQIKELQYFDGTPGKLSGFINEVEYLLQLYPTQEPRQAHVIFGAIRRVIVDTAAETVAQSGANNW
VTMKTALTTAFKDHRPYETIIKKLAETQFKGSLSKFISELEKQYRNVFDKLELESDPSDKINYTRMLDRTVHITIDRKLP
DRMYMSLARKDITSIPKLKQASMELGFYDANPEEEYAQNRNNHKNHRNKGKYQSNNQRYYDNQRNLSSYYNSNSNSNSNA
TTSQNNQNQYQQRPIPPHLQGNYQTFRNSLNQARLQNPNNHQNSNDQANTNRFSGAPVKRQRESQSGQNRMDVNFHQTAS
ETEDTIHM
>Gypsy-16_NVi_env#LTR/Gypsy 7144-8052 [Nasonia vitripennis]
MSPEELQAAFERVMAALTREDERPHVVIREVGEGEDPWSAFPPDDEVEAYLAPEEEDEEEGALVIRRPEPPALVAGEGET
TATGLRRPRAPQPASSSVGRPISARLEREPVHRETNTAETRAPPAGSKATKEPSSEEAAEAAWNQHRAKLVEALEASLDT
RRLEGEAYRLYTQSVRKHGDAFRRCAGKWARLLEEGRAAFYAAEDARRKVAKREDRERQLAKREVARIEAAFAEAKARVR
QFQAPGRTSASEAEKRPRAKSAARTPTSGASDKTSQKSCYVCGHPNVSRSNKCPDVRLHKAK
>Gypsy-17_Adi#LTR/Gypsy 94-4164  [Acropora digitifera]
MSNEPDVAATPVRNLGKVQKFIVGADFEAYAEQLDFFFVANGVTDSKQKKAVLLTNLPTETYQLAKDLMAPILLREDSLT
YDTIVERLQKQLKPQKSALVARYEFDNRSRNAGETVSQYVAVLKHLATDCKFNDAMRLERLRDRLVSGIRDKRMMSELLK
LKLEDLTFDIAVAKCIAIEQSYKDVEALQGGKEANPVDLLSKSKLSKKPKPKKEVKSPEKRGSPSSKEQGDRSCYRCLGN
HDHKSCPFLKEKCHHCNKTGHIARACKAKKRETQAAHPPIHYADSDDGDSDDYLGSLEVNNVSDKDHVIWVNPEVQGRVI
KMELDTGSAVSVLPYKQYKKHFGHVKLAKSLVTLKTYTGQKITPRGEMKCNVKFRGQEKELTLQVVETPGPALFGRNWLS
QIQLNWGEIKALKLSKTPQGVMQQKVDQLLQQYESVFSEGVGTLKGHKADLKVEEGCQPSFHKPRQVPYALRPKVEAELT
RLEKDGILSKVEYSEWATPIVPVVKRNGSVRVCGDFKVSVNPVLLQEQYPLPRIEDIFANLAGGKHFSKLDLRQAYHQME
VTEASKKLLAINTHKGLFRYNRLVFGISSCPAIWQRAIDQVLQGIPGVQCILDDMIISGKTNEEHLENLDRVLKRLQDAG
LKANKEKCEFFRDRVQFCGHEIDKEGLHKTQEKIEAVVSAPRPENVSQLRSFLGLVNYYNRFLPNASTVLHPLHQLLEQN
SVWQWTEQCEQAFTEAKPMITSEQVLTHYDPVLPVRLACDASPTGIGAVLSHVMPDGSERPVAFASRSLTKTERKYAQID
KEALSIVWGVKRFHVYLYGRRFTLITDHKPLTAIFHPEKGVPSMTAARLQRYALFLAGFEYKIEYKNTTEHCNADGLSRL
PLQQKELEEMGVDSSEVFHANQFVSLPVTSEAVSRETRCDPVLARVHESIVKGWSTRVDGDKPFYERRNELTVHQGCILW
GMRVVIPNKLQDRVLKELHDGHMGVVKMKALARSYVWWPNINAQLEELAKACSGCQQNQNMPTKVPLHPWEWATTPWQRI
HIDYAGPFQNSMFLVVVDAHSKWPEVIPVSSTTSSSTIEVLRDLFARFGIPEQIVSDNGTQFVSEEFQAFVKSNGIRHIT
SAPYHPATNGLAERAVQTFKQALRSMHQSSRPVKEKLAKFLIAYRNTPHSTTNVSPTQLFLGRPLRTRLDLVKPNLNRKM
LNQQHQQSLRAANERGRHRRQLEVGDSVMSRDYRGDLKWRAGLIVNKTGPLMYEVEVAPGIIWRRHIDQLKPTAVKVTDT
DTVEASQPQVACAPPAPIQLSTPPNVTGTDPEIPEADQPEVVSASIPIAPEASPASSTVREPRYPQRVRRAPQRLDL
>Gypsy-16_NVi_gag#LTR/Gypsy 2419-3039 Fragment [Nasonia vitripennis]
LLGGGGDANATNAHTQALSDSSNYDGSRRQNNRPIGPAVNKWGIKFTGDSSQSVENFLQRMEGRRMLDDLSDAQMLASLQ
EVLTDNAYEWLQNRLSEQGEWSSWDDFCECIKRWYGQTQGYQQKLLSEVISRTQGPGERVRVYVNNLQGIMRRMVPRPDA
SQQLDRIYHNMLPSLKRGLQRKDFTTVEQLLEAAVEVEAALACEAW
>Gypsy-18_DR_gag#LTR/Gypsy 225-2063 [Danio rerio]
MEIVKRENVNVQNAVIVSGLTLSDIDQDLEAYLIKYGSIKQNLVIDDPNSEHHHSAIVEFSHDSAMQNLKPSLPMSIKST
LDDNVVFHVRSLASVYTPAASSDVTEDYLMNLQAIAHDSGKTLQEVLKSELQKISMLTFPESRASEQVLEKEQPMYDSSM
HMTEPENPAKVSTPSQSPHQSRIPDASVDENMSLNIPTSALSPPGVQRVIMEHVIRTSDTVSAPHVSLRLKAFSGRIPRP
SHEPDFDTWSATVDFLLNDKSLSDSQKTGKILDSLLPPASDVVKHIGPYALPSECLKLLESVYGSVEDGDELFAKFIGAL
QNQGEKPSSYLHRLHVMLSTAIRRGGVTEAERDRCLLKQFCRGCWDNSLIIDLQLERKRATPPPFAELVILIRTAEDKQS
LKEERMKKHLGLNKQTSVPFKLRTATNQQFAYCSEMPDESHKVESCQLSAKQKSAKPSSKAENSEIENLKKEITKLQTQI
TMMKTEPGPKEKSSPSVDGISELRRDIAELQAHLVPRFQREYQEQSPTLRAFPAKHRPRLTGTEVTTTQRPSEQLYSRPR
PGYCFHCGGDGHIAVNCENEPNPRKVEEKRRELRERQAKWDLQNSPNLQHLN
>Gypsy-25_DYa#LTR/Gypsy 119-4671 via tfasty with Gypsy5_AG, 2 frameshifts and 1 stopcodon. [Drosophila yakuba]
MNKSEIADWLKANEIEFPTSATLRQLRKLALDAGCQNASEISETISEEEDTKLEEICQGIASAQINSTLEEEEEALDAAI
RVAEKKKILAKLMQNDSKMTDDFQMAKQLMVPFSATQKEEAFQWISDFERVCRGVNDSEIFQLRCVRMLMKPGTDADLFL
RVDRSNSYDTFKESFLKTFGHGNSTADIVLLLKDTIFNPSKNTVMGYILQMEEIAMRADIDEKLTVQFIIDGFRDRSSNI
ALLYSATTIGQLKEMARKYENLRKVPKTSTIRTGIAFAGERGQIRCFNCSAHGHYASSCTAPKREKGSCFRCGSLQHRIK
DCQQQPKTNPRVVGATGCDQLIRDEEENNTFIPIFNQVGVYFCTDKRQNSNMTFLSAMFDTGSAINLIQRTAIPFKKFND
VLSPTEYCGVNGSRINTFGKIFVKLNFQNIEEEISFFVVPDNYVATHVLLGRKFLNKFGIKLIFKDKMRGRREIDLLNID
SDPLNIDSDPLNIDSDPFNIDSDLLNIDSDLLNIDSDLLNIDSDPLHRLKIELNRSNLDSEPVNRFHIDREPVNIFDIDS
DPASRSKHCKPINKLETRQRFQKCDFDKDIEIDREYKSLPYIYNIDIFKDDEDFNIDPKLNNSNRSELIEIIRINYLDLH
NIPAIQHSYEMRLRLKSEEPVRSVPRRLSYQEKKEVDCKIDELLRKGFMRESNSPYSSAIELVKKKSGEKRMCVDYRQLN
KITIRDGYPLPLIDDCLERLEGNQYFTLLDLKSGYHQVKVAESSVQYTAFVAPSGQYEYTRTPFGLMNAPAVFMRFINFI
LQPLIREGNVVVYIDDIAIGSKTLSEHFVTVGRVLRILAAHRLEIKISKCQFAYKSIEFLGYTLSEKGISPNHEHTSTIK
HLPIPKDRHGMQKCLGLFSYFRRFIPAYSKIAKPLQELTKAGSKYELDENCINIFEYLREKLISFPILALYNPNRETELH
CDASSEGFGGILLQKQDDNKFHPIAYFSQRATKLEARYESFKLETLAVVYSLRKFRIYLEGIPFNIVTDCNAVVLCLGKG
RLNSNIARWALELANYNYTLKHRSGKYMTHVDTLSRYPSAFNQDFEYEPVVTIQESENKDKIVSVIDSDDINLQLQITQN
RDSLIVKLKEKLEHRDVKKFVLSDGIVYRLGENDIELLYVPAEMENHVIRRVHENLCHLGTEKCIKEIMRHYWFPDMKSK
IESFIGNCLKCIMFTVPTHANNRTLHNIPKRPIPFDTLHVDHFGPLPSVISQKKHLLVIIDGFTKFVKLFPVNTTSTKEV
KTCFSKYFQYYSHPRRIISDRGTCFTSLEFAKYLLENNIEHVKVATASPQANGQVERVNRTVKAMLAKITEPIxHEDWSK
LLVKAEYAINNSVHSTTKELPSVLLFGVQQRGCNIDALTEYLDDRTDMAQCDLENVRKNSLNKIEQCQRRSEEHFQKNHK
SHVEFLEGDFVGTIGTNKKFLPKYKGPYVIKRILPNDRYVLTDIENCQISQIPYGGIVEACRLRKWADWRNQCGNIS
>Gypsy-24_GM#LTR/Gypsy 25-4472  [Glycine max]
MPDFEKNPGPSDRLEDALLRLTTQNMYLGESVHALTLQLKELLQRTNTTPQSSPIPISPSPTSPTPASQHRMKLDIPRFD
GSEPQGWIFKINQFFEYHSTPEQDKLTVASFYMEGRALAWYQWMNANGHFTSWSSFIQALRARFAPTPYDDPTGALFKLT
QKGTVAQYLTEFEDLATRVVGISPPLLLSCFISGLSPEIRREVQAHQPLSMVQAAGLARLQEEKVLDQRPSPRSRPPHSN
PFPPQPRPPPSLLAPTLPPLLNPPPPPRPPTTPISTPTLKRLSPDEMALRREKGLCFNCDEKYHRGHKCSSRFFILISDD
LEPITSHIPIPDPTHHPPPDPPDNLDLYPAQISLNSLAGHIAPETLRFVGQLSGQPMLILVDGGSTHNFIQLQMVTELGL
LCHETRPLQVLVGNGQHLTCNYVCEAIPVEIQGLTFPIDLYVLPISGANIVLGVQWLRTLGPVLTDYTKLCMQFFFQDQL
VTLQGNTEDTLGMLSSSQFRRLLRRQSPGLYFHITVAPSDTNPVSTADFPEDIRSLLTKFDPLFNPLQDMPPARETDHHI
HLLPQATPVNVKPYRYPHFQKQEIEAQVASMLQKGLIQPSTSPFSSPVLLVKKHDGSWRFCVDYRALNAITIKDRFPIPT
IDELLDELGNAQCFSKLDLLQGYHQIRMHSGDIPKTAFRTHHGHFEFKVMPFGLCNAPSSFQATMNLIFRPYLRHFVIVF
FDDILIYSPSFSDHLKHLELTFQVLLDNNFLLKLSKCSFAQSQVEYLGHLVSSRGVEPLASKVAAVVQWPIPQSPRALRS
FLGLAGFYRRFIKGYAMIADPLVKATTREPFQWSSQAQMAFDQLKHALSTAPVLALPDFHLPFTVETDASGIGMGAVLSQ
QGHPIAYFSKPFTAKLLRSSTYVRELFAITAAVKKWRQYLLGHPFTIVTDHRSLKELLTQVIQTPEQHTYLARLLGYNYT
IQYRSGSHNQAADALSRLPEHMPHTATMSLLLSVPCLTFLDELHKQLHQNPQYIQQFQEVANSSESHPDFTIAQDLLLYK
GRIWLPRNIPLIHSLLTEYHATPTGGHMGVAKTIARLSENFQWQGLRQDVAEFVARCMECQQTKYETKRVAGLLCPLPVP
ARPWEDLSLDFITGLPPCQGKTVILVVVDRFSKGIHLGSLPTAHTAHMVASLFVDIVVKLHGIPRSLVSDRDPLFVSHFW
QNLFHLSGTKLRMSSAYHPQSDGQTEVMNRIIEQYLRSFVHHRPGTWGKLLPWVEWSHNTSWNVGTGSTPYEVTFGRKPF
NFPDYLAGSSQIAAVDDMLTNRDEVFQSIRKKLLKAQESMKRQADAKRRELSFQIGDWVLLKLRPYRQRSARGTQSTSGK
LAKRYYGPFQIIDKVGAVAYRLKLPEGTRIHSVFHCSLLKSFHGEPDAVRIADLPEQFLNDHPLITPLAILDYRKAADNQ
NAPWEVLVQWQGLSPDETSWENWDQLKQEYHLEDKVIFQGPRE
>Gypsy-26_AMi#LTR/Gypsy 23-4207[Crocodylidae]
MEDPDLATYASMQATAIGPADVLGQNLQALTQILNSQQQMLDRQQDWLQHSLASFKMPKMTKDDDPEAYIEAFERHALMT
RLDKRYWASQLGALVVGKAQAAYRALSRDDAQDYEHVKEAILYRLEINPEHYRRQFRAKKGPEAKQPRVLLQLLRDLLDK
WVNPAGQDREALADQIVLEQFQNDLEERTQRWVRQHTPQTCEEALKLAEAFTASEAHYPRERRNLGPSMAAPREPERRRP
PGRGATRDTVCFRCGQKGHFSRECPSQAAERWIPDDRARAPTERRRGPEPGEPMDCSYAVGGENVAWRRPVVKAWVEGRP
VRATLDSGCAQSLVRGDLVQSHGRRTAHPVRVACLHGDAKQIERQWVRLRVMEHQGELLVGVVPQLACEMLLGRDWTPIY
DVLDRVRDTEVARKKIQNREGWLGEIEENEGSADETDELDLSDFTSSLLFREAQEEDPEIGALREQAQSTRGASALSPEG
RPRFEVRNRLLYRLQGDRGEETEGSQLVVPARFRQAIWRLAHASPTGGHLGRDKTLARVSRWFFWPGMGEEVARQCAACP
NCQKTRTERPPRAPLQPMPVIDAPFSRIALDVVGPLPRSSSGHQYILVIVDYATRYPEAIPLRAVTAPRIAEELIRWIAR
MGIPQEILTDQGKNFMSGVLRVVCRTLQIKQLRTSVYHPQTNGLVERLNGTIKRVLRRCIQGDPRKWDLLLPLVLFTLRD
TPQDSTKFSPFELVLGHRPRGLLQVLREEWEQGEGPSQEPKTYQQAFQQRIRLARDLAQENLREAQTRQKGQYDRRAKER
EFEPGQKVLVLLPTSTSKLLTQWQGPFEILRRVGPVDYEVHRPGHLREKQIYHVNLLREWREPEGWAAFSEADNEDLGPQ
GLERGTEPSPEGTPVRIGEELSSVQQREARSLINEFREVFREEPGWVRGLCHAIKTPPGAIVRERWRPIPHHLLETVRRE
IDSMLRLGVIRPSRSPWRSPLVPVHKPDGSLRLCVDYRRLNAMAVFDAFPMPHVAELVERIGDARYISTLDLAKGYWQIP
VAKEDRLKTAFGTPWGLYEFVRMPFGLHGAAATFQRLMDQILAPHAEYAAAYIDDIVIYSRTWEQHKSALRAILTELRRA
GLTANPRKCALAQKETKYLGFLVGRGTIKPLADKVETIRNFTAPQNCRQLRSFLGLTNYYRRFVPHFAELATPLSEALKG
RKTGAVKWTREMVQSFERLKRALCEDVIIHTPDFRKPFILQTDASETAVGAVLTQEEGENERPVAYASRKLLPAEKRYAT
IERECLAIRWAVDHFRYYLMGREFKLVTDHAPLRWLSTAKTDNARITRWALALQPYKFHIIHRPRKTNTVADFLSRCGGE
DQTGNQGGQVKGRTDPTGTTRMGNEEAPQGILRGG
>Gypsy-29_AMi#LTR/Gypsy 46-4182 via tfasty with GypsyDR1, 3 frameshifts. [Crocodylidae]
MDTQAPTDWQQAHNLTLRLLQGQQAQLEEMVRMRTQEAEARIRLFARQQDLCEKIKAQQMLMVREGGGSGLPRMSAEDDV
EAYLESFERAATAAKWDPGSWAARLGPLLIGPAQAAYRALSRAEARDYNKVKEAVLYHLEISPETYRHKFRARKGPEVGR
PRLLAQTLRDLAERWLQPEAHTTQEIVDMIVLEQFLTDLTGSSQRWVWRHQPKTMEEALRLAEDYASAEGEGETPRRDRA
GGPALTPRQTVTAPPRCGESTRREGRAGSYWELTCYRCGEKGHMSRFCPRLPQAQTLRPRRTMRRWTVACGRHRGPGQRS
KPVVEVRIGDTIIPAVVDTAAPSRWYVRTAPPTSREPRKPVSMICMHGDGLHISTEEGKTLGAGAHEEIPVGLAETLPCP
MLLGMDWPHLKEVIRQLIADMHKEEERNPQALCFRDPEEDLDVDQIIGKGDFHQEQRQEPLFRNIWGSQLARTEEETRDP
QRPPQNPRYEVRRGLLYRVEDQEEGGERAQILVPRRYWEGLLRVAHTLPMGGHLGRDKTEARLKRRVFWPGIYKMAEKFC
AECPECQKTGGVRPARVPLIPMPLIEWPFDRIALDIARPFPRSRTGYQFILVIIDYATRFPEAVPLRSVTAPAIVGALLR
WIAWVGIPREILTDQGKNFMSKILKGVCQVLKIKQLRTSVYHPQTDGLVERFNRTLKGMIRACIQGDPREWDAMLPPLLF
AIREAPQASTGYAPFELIYGHSPRGLLDLICEEWMQAGTDPSNQRVVGEFRERLQRAQEIAQKNLSQCQERQKQRYDARS
IKRELQVGDWVVVLLPDNTHKIMARWQGPFRVTRCTGPVNYEVLRTTPTRRKQIYHINLLRKWRQGDGWLMKPVDEIEEE
NGTTVRDLTEARGEPRIDNQLDPSRQAEMRALIAEFHDVFREVPGEARGVHHHIVTPPGRIIRDHWRRLPRHLWPAVRQE
IEQMKRLGIIEESKSPWRSPIVVVPKQDGSIRLCIDYRKLNEIAFPMPQIDDMLEKVGQARYISTLDLTKGYWQIPMAVE
DKEKTAFGTPWGLFQFKRMPFGLHGAAASFQRLMERTLAPHQDYAAAYIDDIIIFSPDWEAHRRHLRQILESLRRAGLTA
NPKKCTLGKRETQYLGFLVGQGVIKPMTDKVAAIKQHPLPRTLKQLRSFLGFANYYRRFIPNFSEKAAPLTELTKGWRNP
VPWDSRALRAFDQLREALCQHPVLYTPDFRKTFFLQTDASSVALGAILFQKEQGAERPVAFASRKLNPTEARYSTIEREC
LAIRWGIELFQYYLLGREFVLITDHAPLRWLRTARLNNARLMRWSLALQPFCFSVEHRAGRRNKNVDFLSRPGDDPDKDT
QPNEDDTQKDRVPNPDLITF
>Gypsy-26_DPse_gag#LTR/Gypsy 3756-5018  Second gag of element. [Drosophila pseudoobscura]
MEWQNINAALVKIKENFDKSYKCLAQNRNISNETISRHATXLVACFNQARSLIHDNKEKLNTQHWSYVSRFLNRLKTNLN
SIKSKYSLDITIPSILNTPVLVEEDTNTDLEGESEIASGSDTHIKEEDLGDLTIPAVITLTNLVDSESESITEVKTLKMA
MSQLEFLKLAASLIPEFSGKPENLQSFIDALSLVDSLKGTHETTAVNLIKTKLKGHIRNLITTEQTIVSIIDKLKSGIKG
ESAKAISAKLFNLQQKQKTASQYIQEVEQLTRALQSAHMINGVSQEYAEELSLQVAVKSIIGNSTIDEVRSVMKSRNFNT
MSEITTVFVDSCTDAVGHPNTVLYAAQQRYNTNRAYNRGNYRGNYQNNNYGNNRGRGQYRGNYRGRGNSYRGHNNNNGNN
NNVRIAQNESGNSQQPLGTQQ
>Gypsy-24_DYa#LTR/Gypsy 1403-5303 via tfasty with Gypsy7_Dya, 3 frameshifts, 2 stopcodons. [Drosophila yakuba]
MTDSVIKPFLCKVIDKAILRNEWEKxLRAFTIYLEAEGIDTxKQKRSKLLLLGGVQLQSVVYSLPGALVEPSDGNKEDIY
KILIDHLNKHFSPKQNSTFERHLFRGLTPLDTESFGDFMLRLRQQMQRCAFGSSKAEIENICLKDKIIDVWAPLDLKKRL
LGKEYSLEEVIEACQVEEQINKESKEMTSRPIAEPICKITHRGFNQSGECPRCGKFGHTNNDPSCPARNVTCNKCSKSGH
FARKCRTNLNGRFLKSQRNNLKWPCTYIRSVEEEATSSKLKKGEEHCFKVSSEDEEEFIRCRVGGREISLIIDSVCKFNL
ISHADWSLLVKRKATVFNVRTHTEKQFRAYASNKLLRVMYIFEAPISVEPGTEEIASFYVIENGEQSLLGRDTAIELKVL
RLGRNINRIEEMEPFPKWKNIEVSLSIDYDVKPVQQPVRRIPAALEDKVMERLDEALSRDIIEPVTGPSAWISPIVLAFK
ENGDIRLCVDMRLANKAILGENYPLPTFDCFMTRLKEAKFFARLDLKDAYHQLALDESSREITTFITPRGLFRYKRLMFG
VNSAPEIFQRLLEQMLSAVPNAMNFIDDVIIFGATDLEIDSAVKEVCQIFQENNVLLNKEKCIWKTSKLKFLGHILSDKG
IEVYPEKIDVIRSFRDPKNKEETRSFLGLVTYVGKFTPDLASHTDPLRKLLKTESKFTWGEAEKNAFSNLKNLLYKVPKL
SYFNPRHRTRVIADASPVALGAVLLQSKVDNEPLIITFASKVLSEVEKRYSQTEKESLALVWAVEKFYYYLAGLHFELVT
DHKPLEAIFKPTSKPPARIERWLLRLQAYTFTVIYKSGRDNISDALSRLCQLPAVEPIDHKTEYSILRVAQSSIPRSMTI
HEIAESSKRDEEIMDAISCLENDSWKPDSSVGFYPFRYELSAVGSLLLRGNRLVVPTSLRVKILELAHEGHPGETAMKRR
LRSKVWWPQIDRDAEKFVKACRDCCLVSQDIRPPPFPTGPWIWVASDLLGPLPNNEYVLVFIDYFSRYMEHKFLKTISST
TLVEAMKEIFCRLGYPEHLRTDNGRQYVSEEFSNYCKACGIKQVRTPPNWPQANGEVENMNRALVKRLKIAYANGKNYKE
ELQKFVLMYNVTPHGTTSPTKLMFNRVIRDKIPGIGDICENTLDSGERDKDIIEKNKNKQAADKRRGAKEVDIEVGDKVL
LKNVVFPNKFDKTEFTVLERHNNIVVIEGGGRKLTRNASHLKKVPASQTYPASCPTPQPDDSLPESTPTSENAVLQPTEG
SPGIQPPLPPLKLKLDNKGG
>Gypsy-19_DAn_gag#LTR/Gypsy 744-2240  [Drosophila ananassae]
MPIQRTPEQSGAEAIPNVCVICENVMENTQPCVITNCKHIFHKSCMELRFHPDKENECPSCLAKVLKKDVRVVVGNCSPG
AKPGEEKERQLNRPNTRSVVRQLQLEEGNVGTSQIRSEQRLNWAQSNPASESERSLNTRPLNYEIPRNSPQRGRSQRGRP
PRQFPRNNDNWVRPNIEHLVRETVDRMLSSLVLRNGVENSMGQDQRDFDVPSPRAFSSGHTSNKVADIIQKWGVRFEGTA
EGLSVDEFLYRVKVLTREHLNNDLEAMAKNVHQLLTGKASSWFWRFHKRTETFTWNQFCTGLREQYKENRSKTELREQIR
ARKQKPGETFDTYYEAICKLMDKLSVEFEESELIELVQGNLLTDMKDRLLFEEIYSIDHLRRLVQRREHFLQEAGRSLRN
VTKSKEGGPYRVYAVEEIEENKSENNSLDISAIQRNPANITCWNCGVTGHFWQDCLGDRRIFCYGCGKPDIYKPNCIYCK
TSSENRKSGASQNNRMSHQ
>Gypsy-18_Gav#LTR/Gypsy 374-4216[Crocodylidae]
MPREEARDYDKVKKEILHRLDINPETYHQAFRAQKPWETKELQALLQQLADLASKWLRPLESLKSEICDKILLEQFLYDL
DEETQWWVCCHRPGSSTEALQLAENFWSARGEKLQEQSPRMTGPPRPHDPTRSMSRGPWESRRPEDSSVICFWCGRSGHM
AQDCVSPSRGPTRATHSPFMELSESSGQVDSSGVEIMDCSIGRGTSAGPRPHPIVDAWVGGKRLEAIIDTGCSHTFVQSK
LAPSMYIRKATPVKVTCMHGHSTFYPRWVYRVTVLGTMREMPVGLAQDLPYPMILGRDWHEIYEVLGVAKNVXTGEVGLA
GEDTGELNLEQLTSSRAFRKAQEEEREFQAIWETELAKVEDEVVDPARYARTPRFEVRNGLLYRVKQSPLGEAEVAQLLV
PTQFRLPLLNLAHGNPLGGHMGHQKTEARLTRWCFWAGLYDQVEKFCCACPACQMVSRNRPARAPLQPMPIIEVPFSHIA
LDVVGPLSKSSAGHQFLLVIMDYATRFPEVIPMRSVMGPQVAEELMKWIAQVGIPKEIITDQGMNFMSSIMHGLCKTLQI
KHLRTMVYHPQTNGVVERFNQTLKNMLRRCVQVEPRQWDLMIPPLLFAVREAPQSSLGCAPFDLVYGHRPRSLLDQVKEG
WEARQESELNSSEYMQNLQQRLRKVGELAHECLRTAQQSQKATYDKKAQERGLRVGQNVLVLLPDTKNKLMKCWQGPFVI
MWQMGPVDYEVLKPGSRREKQIYHVNLLKEWREQEGLLIAPSPPEDEFGRELGPRTGLETNDLAVPMGPQLDXTQRXQVE
ALIKEFRDVFSENPGCARGITHCIIMPPGQVVREKWRRIPHCRHEAIRTELARMLEQGVIQELWSPWQSPIMAVTKPDGS
LQLCIDFRKVNAISRFDAFLMPQISELLERVGQARFISTLDLSKGYWQVPLRKEDRAKTAFGTPWGLYEFRRMPFGLHGV
AATFQRLIDWVLAPHQQYAAAYIDDIIIYTQGWEDHLRVVRAVLRELRQVGLTANPRKCVLGKAETKYLGFLLGQGQVWP
LADKVEALHQFKPPQTRRQLRAFLGLAGYYRRFIPKFADITAPLTNLLRGKRGGSLAWNAKSTLAFEHTKKALCHEAVLD
TPNFELPFTLQTDASERALGAMLSQEIEGASRPIAYASRKLNPQERRYATIECECLAIKWGIQXFQYYLLGREFTLITDH
APLRWLRVKQMDNACITQWALALQPFNFKITYRPGKANTVADFLSRCHESEDRTDPXEAGVDLVIPXPQGVSTPNGELRG
E
>Gypsy-22_SP_pol#LTR/Gypsy 1226-5591  (genewised: pos 3600-4113 excised as if intron)  [Strongylocentrotus purpuratus]
CRGGKLAGADPIDQVSALKTTVSNASRIIKLVKSTGLSAFIGANVHGANAKFLVDSGAAVTVISSKVYEGIDIDLRKHLK
EPTEDIQLQAANDEILHIYGTIDLDITLEDMTFKWNVFVADISDEGLLGFDFMHHFNFILEPRRGLRLNDRLFQCEIISD
SSCNVIAKHDVIIPANSEFIIAGSANVTKLKGDLPYGLIEPMNSGETLQPIHVASCVVDINRNDIDLPVRVANTLGVDIH
VHAGTKLANLQLIDKVYHEGNNGAKPLPRNINVVKSSSASGNLRFEDWSEDLKSLYNRSCGELSSTHERDKLAELLDKHK
STFAVSPNDLGRTSLVQHAIDTGTASPIKQRPRRPPRAFVDEEEEIIQTQLRSGVIRESTSAWSSPLVYVRKRDGSTRPC
xDYRKLNEVTTKDAYPLPRIEDCLxCIGGAKIFSTLxLQSGYWQIELKEEDQQKTAFSTRSGHYEYITMPFGLCNAPSTx
ERGMELLMKGLQWKTLILYLDDIIVLGSTFEEHLERLxEVLxRLGQAGLKLKxSKCNLVKSEVCYxGHVVSAKGIKPDPD
KIDRIHQWPTPKTVxDVRSFIGLCSYYRRFIRGFSSIASPLTRLMEKSRTFEWDSECQSAFDELKLAITSDNCMAYPNDE
GMFILDTDASATGVGAVLSQLQWDESAQCELERPVAFASRSLTKTQRRYCTTRRELLAVVSFVCHFRHFLFGRKFLIRTD
HSSLRWIMSFREPTDQMARWIERLSQFDFVIEHREGRKHGNADALSRIACDPDTCDCYDKSSILEKLPCGGFIIGNLSRE
ELITMQKNDPNVAIVLDWLTKSPDRPARNLVQDKSPTVRNLWLSWQQLQIVDGLLYKRHDTNSKLTTRLQLVVPEKLQDR
VIExNHASIFAGHLGAKKTLSRISRSFFWLNMNEAVRLFIANCVICGARKRPTSKPRAPLGEYNVGHPMDRIAIDIMGPL
PVSDNGNRYVMVVGDTFTKWIEAYAIPDQTAETVAEKLVNEFISRFGTPLELHSDQGRTFESNLFQDVCKLLGITKTRTT
PYHPSSNGMIERFNLTLANMISSFVDKNQKDWDKNLPLLTAGYRSSTHETIGFSPNFLMLGREVRTPLEFSLDIDPIDEE
PSDIGGYANRMAKTMKQSWKLARDNIGRSTSRQKRNYDLRTSVNNYEVGDLVYRLDSTRHKGLSPKLKSARWIGPCVITR
KLSELIFEIRSSPRGKTTILHHDRLKPFLSANVPS
>Gypsy-24_BG#LTR/Gypsy 1433-5440 via tfasty with Gypsy-50_BG_pol, 1 stopcodon. [Blumeria graminis]
VASGKRHRREHITNDVEVTVCISSFKEEHHDHLLLPCKVSDINGTIIKTKAFPDCGCTTTSLIDIDVCANYKIYTYPLHK
PKRIITADGTESISGLITHGARLKLQIGNHLEEIDALATKLGNCDFILGLPWLSLHNPFVNWASKKVTFDKVYCKKYCFD
RKPNYLIPQNPPQIVFFNRPKFDTPGKPRKVGAAAFLLLADREDVEVFSTCIEEIDLELQKKERGNMLKQNISCAKVSLE
DIRIALDPKPYTDPKIKLPSYFHQFLHLFDAKEADILPEHRDCDHKINLKQGAIPPSGPLYQMSTKELLVLRKFLDENLA
KGFIRPSTSPAASPVLFAKKPGGGLGFCVDYRALNAITIKNKYPLPLIQETLSQLSRAKYYTKLDIISAFNRIRMQEGQE
WLTAFNTRYGLFESLVMPFGLCNAPATFQARINEILRPYLDIFCTAYIDDILIYSDSLEEHRKHVKQVLEALCGTGLQLD
IKKCEFEVPEVKYLGMIISTTGVKVDPQKIQCIIDWKPPQDIKDVQAFLGFSNFYRRFVDKFSLIVKPLVALTKKDTKFL
WSDSCQKAFESLKNSFIKAPVLKHFDPDRKIYLETDASDFVTAAVLSQEDDEGILHPVAYMSKKFDPAECNYEIYDKELL
AIVRSFECWEAELKSSIDISVLTDHRNLEYFMTTKQLSRRQVRWSEFLSEFDFKIKYRPAKYGKKPDSLTRRSQDLPSVE
EDARRRYQNQTLLKYTHIDPLIRSQYPEIFLEEPPDENKYETVSSAKIKKASVESVVEHVDLKETMKPTQNESPNLVSQE
SVEQQITALLKEGYSNEAEIPCDTFWAEIKAELTKKTGVPFSKKISLSECKIQNNRLYFRNRLYVPYHKESKLRRLLLQS
AHDSTETGHPGSSKLYEILSREYFWPSLHTDCRTFSTACYSCKRAKTPHSRYQGALKPLPISNQRWRDISVDMIGPLIES
NGFNQIMVVVDRLSKMRHYIATSSTMTTKQLADLFIRNIYKLHGLPDNIVSDRGNLFVAELWKTICTRLRIDLSLSSSYH
PETDGQTEISNAFATQYLRIYVEFTQDDWEDWLALAEFAANNVYNEATKMSPFFANTAQHPRMSFGPPRDLLTRASKTAK
KSNELGNEFVDQMEQILGILKENITSANLRYEEQANRNRTPAPAYxVGDLVFLNARNINSPRPVKKFDNKFLGPFKIKSL
LGTHAYRLELPAELQSIDNSFHTSLLQPVPNKMFPGQNVTQDTAIMIDDYGEKLWAIEKLLDCRRYKGNYQYRIKWRDST
DITWEPLKNVIFASKAIKEFEINYPKKKRPTKKDIEKAKKEVQRTAISQIDQDLDD
>Gypsy-23_BG#LTR/Gypsy 1211-4954 [Blumeria graminis]
GNVKRSTPIGSRLLESVSVGQVSLKELSSSRHMYIKTKIGDITLITLVDSGASGFAFISKKLCHKLNVTSSHLKTPLALV
GFEGKPGAQITKITSFNLAIGRHQEEMSAFVTPNIKYDLVLGLPWLEKHNPFINWAEHTLTFGENCLDNACCKFETTIPY
VNSTDFISAGKCQAQIAPPQIISKRPSELQEIRPTKVSAHEFITLSQNPGNHLFALSIRDLDLLLDSSMQRQPTVRINNT
NIAIPKDADPKIYLPTHYHAFLDVFDRKQANLLPPHRPWDHSIDLQPGKQPPVARPYAMNQKELEALREYLNKELSKGFI
RVSKSPAAAPVLFVKKSNGDLRFCIDYRGLNAISVRNRCSLPLITETLCQLSRAKFYTKLDVISAFNKLRIKEGDEWKAA
FTCRYGLFEPLVLPFGLCNGPASFQTYINYALRGLLDDFCTAYMDDILIYSENLVDHQKHVKAVLQRLREHGLQVDISKC
SFETTTVTYLGLIVSTNGISMDPKKVACVQEWPTPRSVRDIQGFLGFANFYRRFIPEFSRLATPLTQLTKKDVKFTWDQK
CEESFKNIKRAFRDGTMLAHFDPRRKAVLETDASDYVTAAILSQYDDENILRPVAFMSKKMLPAECNYEIFDKELLAIVY
AFETWKSELGSVEHPTVILSDHKNLEYFTTTKKLNRRQARWNEFLADFDFKIVFRPGKQGVKPDALTRISEDKPSDVNDE
RTRHQQQTLLKPQQILRRVETSKPIDLSPMEQLHTDELLPEEWSRHCKEDKYCQEIRAALNNPDSNRTDIELASCKTTEH
SFCLNGREYVPLTLREQILKLLHENPQYGHRGAAALYTLLSRSFWWPKCHNECIKYARGCEACQRNNPSVQRPYGFLKPL
PAPSAAFRHLTLDFVGPLPTCNIRNFYYRYILQVVDRLTKRVWIIALERPTARETAQAFLNNVVRFAGLPDSLVSDQGKA
FIDSTWKEICARLTINHKLSTSYHPETDGQTERANKTLEVYLRHFINYRQDDWANHLALAEFCCNNHVNASTGISPFFAS
FGHHPRLNFLPESEITVARDTPEFISRMQDISQKCHENITLAQEFQATYANEKRLPAPRYKVGDRVYLSLKNIRLSRPTK
KLDHVRAGPWQIIKIKTPLVVKLDLPPQWKIDNNFHVNLLKPAFVGFKSQQQSQPPAVEISNEHLDTYEVEAILDSRIRR
KKVQYLVRWTGYDDTTWEPLDNLTGCGDLLKEFHGLYPSAAGSTELAD
>Gypsy-7_DPer_gag#LTR/Gypsy 1247-2662  [Drosophila persimilis]
MNIRWIASRRKDELQSLAKEFGLGETGTVEDLRSRITAFIARPGHPEAVQARLDELATHFGNIPSPRDHRSPATSPGPES
RTKMEDSKEGPKLRLIVPELPSTSQGSTHGYRESATETPAAQDEQPRRDAQGPLQGIRPEAASKNHEPGPTTTGPLATPS
HQTTTEGEQPRLPQGHRVSRPGGGEISYSLLADKLRKWGFTFDGHADPLAFIERLEERVESYGGSPEQLPRAISGLLTGK
AEGWFRTFQMQGQNWTDFRKEFLEFFLPPRYFQRLEDTIRSREQKPKESFRDYLIELRLMMQRAQYTREQELERIYENLR
PEYQMYTRRQDFRSLTELTQLVSAYETARDRDALRSIGTTQNHRAAYIGNGTNPQRGNTHETPGKTEIANRGIGQEQEQA
IDVQRACRNCGENGHFSGACTNRQKLFCWECGHRGVRTINCCRKPASGNGSGLRPTGTWTEARTQEQEKPTH
>Gypsy-7_BG_gag#LTR/Gypsy 282-1607 1 stopcodon. [Blumeria graminis]
MSAPTTSRVGKQRAEAEDYESWPRGDFKKSVFATCAPGDEEKHHTVPELPWNKLVTEEVLKNEYEKRLAARAAENKSGTA
KESNENILRIMCVELAEQSNAISEYCEKAHKEKEEAENLAQKWAIESNRWKDAYAERSLKDAECKKDSTTSVSEDGATES
QKKKYDTKSERQKSMFRSRHRQKITDPPVFKGTDNPSIEDWAFAVDSKLEGDALYFDNERHKISYLLGFVDGDARKFLKP
YLKPESVNYITEAEAIVDILRGAYDKTDEQKRSEARANFKKLYQKDDAFSAFFSQFLTYASELQLRDQDRMDELREKINP
ELQRAILGATFDNTFEMSKHCLKVEPQLVLLQRTTNAQLRYEQRKEKIKNPITPPKEIPLPRHSVPPMPVRTSGTCFRCG
KLGHFADACPAAKINEVDTDPKETKIEEQGESSGSELFTDSD
>Gypsy-7_DWil#LTR/Gypsy 798-3223  [Drosophila willistoni]
MELDEVMALRVADLRNKLAELNLSTVGRKRDLQNRLLTHYDIKDQDSEDEEVESVVTARGELPINNCSRSWYTLKDVEGS
VSYFSGSGSPDIDSWVQEIEECAITVQWDKLQTFIYAKQLLAAAAKSFIRSQHGINNWEILKAALRKEFGSKRSAAEIHR
ILSQRSQKREETLHEYLYALMEIAKPVNLDDESLIEYFVKGIPDSQVNKAILFQARNLQELKFQIETYQKVRASHKSLNK
FEAQSGGKINQGKIIDTSKNRKCYSCGDTSHIRRDCPKNDQKCFKCGKVGHRMAQCKLENPIKYERNTNVVENEDVVIQP
SSEFTPSGLELKDIVYSNVIFKRLVDTGAGLCLMRRNIYFMIGSKPLLGGARHLTGIGDSKVLTFGSFIIPVKVDGLVMN
IDIEDRDKSPDINLSHLNHLIKGEVEKLIRNYQPKRNANAPVSMKIILSDEIPVYQHPRRLALCDQEIVDKQIQEWLAEK
IIKTSTSEYASPVVLVSKKNGQKRLCCDYRKLIEKKDVPLRVARWAMYLQDFDYVIVHRSGTQMRHVDALSRFACFMLVE
DTIKHRLKEAQLQDEWTKAVRTLVEKESYKDFYIENEILFKDPNCELIVVPSAMEHEIIRLAHTQGHFSVKKTQDLIEKS
YYIPELRDKVIRVVHSCVECIVINAKAGKREGYLTSIEKGDKPLCSYHIDHVGPMELTNKRYNYLLVIIDGFSKYVWLYP
TRSTGVDEVIRCLEVQATNFGNPVRLISDRGAAFTSHIFKRYCEDHDIVHLLITTGVPRGNGQVERIHKIVIPMLAKMSL
DNPASWYKY
>Gypsy-8_AMi#LTR/Gypsy 135-4160[Crocodylidae]
MLVKMATLGHIEEFDVSQPASWDSYAERLSYYLEANEVENPEQKRAILLTVCGAKTFAIVRSLTAPALPNTKSYAELIAL
LKAHFCPRPSVTLQRFHFFKRDQKANEGIADYLAELRRLAEFCEFGDLLDGLLRDRLICGVQDEAIQRRLLSEPNLTLAT
AQEKALAAEAASHNVREIRQAFSSNVHLLQKDQESDHHQQIQRIIPSPTAPRKPINPQTCLSCGGQHRRRECRFRNAECH
ACKKKGHIERVCRSKASSGRQKDCGKCIHSQTTHRLESSPEREVQKLYLIQNVGVVETQGSEMIATVVINGKKCKMEVDS
GSGVSLIDENTFFQLFRHPLPKLLKPECRLRDYNGQIVETLGSCSVDVQYGSVRQRLPLIVTKGSRKSLLGRNWFSPLGI
SIQGVHSLCTESLERLAREFPQVFSEELGTYSGPPVTFQMDPAIAPIFMKARNVPFALRPKIDAELDRLIAQGVLEPIVH
TSWATPIVPVLKPNGSVRICGDYKCTVNKALKQDPHPVPAINQLLSVLAGGKVFAKLDLAQAYQQLIVDDKAAEAQTIIT
HRGAFRVKRLQFGISVAPGIFQRFMEKMLAGIPGVVPYFDDVLIMGPSREKLTERLREVLQRFDKAGIRVKREKCQLGVS
SINFLGYQIDASGIHPVEDKVKAIHDAPIPKCRQDLQAFLGLLNFYHIFLKDKATIAEPLHRLLDKGAQWKWTCQHNEAF
QGVKKLLTSDSVLVHYDEQKPLSITCDASPFGVGAVLSHTLPDGTDAPVAFYSRTMTSTERNYAQIDKEALAIIAGVKKI
HNYVYGRKFEIRTDHKPLLGIFTTDKPTPPILSPRMQRWSIMLNAYDYTLVYKPGKTIANADALSRLPLQIPDCATPPPA
EVLMLESMPEAPLQADQIARMTAKDPILARVLNWVWRGWPADKLAEEFRPFSSRQHELSAHKGCLLWGNRVVIPEAGRQI
ILTTLHAAHPGIVRMKALARSYVWWPGMDNDIERVVRECSICQATRHNPPKAPVFPWEMTKEPWSRIHIDFAGPFQGKNF
LIVVDSYSKWLEVITVSTLTSTATITALRQLFATHGVPDTIVSDNGSAFTSAEFQDFASRNLIRTVTIAPRRPQANGQAE
RMVQTTKDALKRIVVGDWPTRLARFLFAQHVIPCPTTGSSPSELLMGRRLKTCLDRVNPDLVRDMQFRKEKELDSALASG
TLRLFVPQETVFARNYGTGPQWVQSKIVSATGPVSYTVQTDDGQVWRRHVDQLRGRSPTDNPTPEQSPSTNPPPTDMDSL
GKCLPVSTNANPLPSPSEGSVAVESPDRLTGPSSAEPLTESGSMGRPQRKRSPPKWLADYSV
>Gypsy-7_PTri#LTR/Gypsy 26-4426 Gypsy-8_PTri prodcut near-identical. [Populus trichocarpa]
MDTRGKTNAEFRAEITEALGRHDANFDELNQNFNRVNDALQGVMAELQAMRIAQTHRSNEREVNPFAGGSSSHDRSSANL
NVDRNHTTLKLNFPTYSGEGDDPTGWIFKAEQYFEFQNIDAPRQVQLASFHLSSVALQWYRWYTKNKGQLRWHEFVSALL
HRFGPTEYDDPSEALSRLKQTTTVNAYQEAFEKLSHKVDDLPESFLVGCFIAGLKDEIRLDVRVKQPKSLSESISVAHLI
EERNHFQRKLNNPARTATTTPFQPKPAHPNTLGLLGPVPVQRTAQPATPIRRITGQEAKERREKGLCFYCDERYVPGHRC
SRPQMFMMVDVQQKEEGEDVDMEIVEPEEDIPEISFHALAGTNHPQTFRVIGKAEKTQVTVLIDGGSTHNFIDQSTATKL
GLLVIHGKTIHVTVGNKEIIECTGRCLGLALSIQGIIVRADFFVLLVAACQVVLGVQWLETLGPIKTDYKKLIMSFKKGG
QTYTLRGLSNNELVPLSDRELVHLARVGYFVQIEAETRTKTAPTWSPDLNSILSNFAHIFQEPTALPPARSHDHQIPLMP
NTFPVNKRPYRYPHYQKNEIEKLVKEFLQSGVIRPSRSPFSSPVLLIKKADGSWRFCVDYRALNEITIKDKFPIPVIDEL
LDELHGAKFFSKLDLRSGYHQIRVQPEDIPKTAFRNHDGHYEFVVMPFGLTNAPSTFQSLMNDLFRPHLRQFILVFFDDI
LVYSRSWMDHLRHLRQVLSILSDNQLYVKLSKCQFGVRTVSYLGHIISAEGVAVDPAKIQAVQNWPIPATPKDVRGFLGL
AGYYRKFVRGFGVIAAPLNQLLSKEGFRWSEEALMAFNKLKQALTSPPVLRLPNFAQQFVVECDACGDGLGAILSQDNQP
IAYYSEALKGKVRLLSTYDKEMLAVVKAVRKWRAYLLGRTFVIKTDHKSLKYLLEQRLTTPSQACWLPKIMGFDYNIQYR
KGKENQGADALSRIAAAQLHAISALITDWWKTLQQEVQQQPYYSNVATRPSLKLVQRDGVWMQNGKIHLSPTSSLIPAVL
ADGHSSPAGGHFGYLKTLTRISSSFIWPGIRTSVKNFIKECEVCQRCKHETLKPAGLLQPLPIPQRIWTDISMDFVEGLP
SSQGYSVIMVVVDRLSKYSHFMPLKHPYTAVTVAKCFLDNVVKLHGMPSSIVSDRDKVFVSSFWKSLFSLQGTSLNYSSS
YHPQTDGQTEVVNRTLEQYLRCFTCDHPKAWKDWLAWAEYGYNTAIHSTTKVSPFEAVYGIPPPSMTSYIPGTTKLPEVD
QLLRTREVILRDLKRNLIVAQGRMKARADLHRREVTFQVGDYVFLKLHPYRQKSVAFRSSLKLSPRFFGPFKVLARIGPV
AYKLDLPTGSRIHDVFHVSLLKKHWGDIAKDTVVTLPPITTDAVVLPEPDAVLDRRVIQKGKYRPRTEILVQWKGALPED
SSWENLWRFAKTYPQFSLADKENSRAR
>Gypsy-6_HM_p2#LTR/Gypsy 5669-7630 Unrelated to anything yet (Feb 2009)  [Hydra magnipapillata]
MVSGVLFYQLSLLTLVQGLFIGEVFDCTKVKPIGIYQLPEVTSCNHNMHTLNDSVKTFMADVYAYRPQTTTITLFHCYAE
KVTLTCQSNFLNQKSKDLTSKRIPVTAGECLLAMNTKISPYGALQVDNLNTWRTVATDQFHCAWMRTKTQEYTHFFMKTY
NGQITGRAVTLEQYVTKTLCYHALRRCVPSEWPESIIVWGSNDNHDKEVMKKLGTYPIERIGDFILIRSLKVGGAIQLAE
QKDYVLTLDNGMLLKDPKFPDDVFKQYKSTAANYSQKLANDPATAILEAHITIALMTQKMNMISTWEQMCFIQTEISRIH
RWMIAQFPTTSAEWVHQSQGVTVESAGDALLLSECINYTTYAIQYNRKIGNFCFEHFPITLPSSNITYFLEVSDRKLIRT
SPRIPCKLRPKHTYLQDPKLNIMYEISAYGRVKIVETQXDHVXHSPNNPIPRIRGYNKDFLVEKPQRLSPYTVLQLISGS
HETLQSLKTISDTNGGDVLTGIGTALGSALQATASGGSQIIKAFGGAIKDSLNGVSDLDEKLVRSIGDASSSVLTAAGGA
VKDVGEGAGSFFQKFLGGISGSILWAAILLIVIYLILNKPNLNYSLPCLRCFQIPLVNETVVQPRQDQSTTMSPRVKGRH
PRNCSACKVVHRE
>Gypsy-2_DFa#LTR/Gypsy 1753-3753 (fragment) [Dictyostelium fasciculatum]
MYQMWHLCLSVIMTQWKQRNVTLQPPNYCFQRVHIDVITGLPNAKYHGKTVNALLVVVDALSKMNRLIPTTTTLKSHGVI
SLFNREIFKLHGLPKQIISDSDSKFTSKLFKKLEAMYNIKINHSNPTHHQSNGQVERMIRTIENIIRKDLLQSSVENHKV
SWAECIDNIEFAINNTVHSTTGYSPFTIYLGSNPLSPLNLLDTFTPNFNDNTDIKITENHKLKEIIRDIVIKRINEGNAI
SKARYDHNKVENNIKSGDLVYVRRDRDTHINKTEPIYSGPLLVNGVDTRGNVEVKDYVAGADGSTSKDLLVNPRFIKTLK
PLLATGNPVHTEGAENAQGNPVHTEGAENAQGYPVHTEGAEDAQSYPVHTEGTENVQGYPVHTEGTENVQDYPVHTEGAQ
GARDNLDGRVGDDRTLYQDLNKIQSTLQGQGVTGGDQGIVSQAPGDIYDDVPNTADWTKQRVVLNDTLKKVEESIGKGKN
KLQVKDNNRVIGKEDIVITNYNISKINYDDIKINFIEILHQYRQQLSSPTTTKYFNMKEMNSIRIIQSLQQNNNDSPTKD
IVNSIGVITSRAWLKPLFIVKSKRTFKYQGNGRSRTEYLININDCEVWMPNDLVNQQHVRAVSKTQQVSLAIVSTGKVFS
PGCSDQVLQPWFSYHLNKRGTWDSVTI
>Gypsy-1_MI#LTR/Gypsy 4207-9995 via tfasty with Gypsy-74_NV, 1 frameshift. pol similarities from ca. 5100 on.  [Meloidogyne incognita]
MREQWKSTCQNRNQQLEIAKIIAETNPTKAARYLYGRTDLIAFLESGIKLKWNLGLCTPVNVEEIIWDQKVEDKCFELLP
VKIRGKLLFAAPGSPDLLMESKTKSCEEQPIILNKTKLLNFDQEQHSLKIKPIIDVKTGILFKAGNKFEEEKAEVKDIQK
FSDLIHQSMTLPEDIKQPEVEDVLSEIFGLPKILKEKGSNVTGEVFENLKENLEAGLEKGKEVAKDITEKGSEIISDAKE
FIEDKWTFMQRLYWILMAFLILSALLVNTYLFWKFRALFSLIWKGIMIGRTVIKFFFGGKEGSHERKEIKVNAIEMEELN
PKPSAPTLNDLEEKAYILDYIPSVCSVKSRKRCYVEVLFGGKIQKALIDCGADISYCGESVASRCGLKINSKDVPMAWAA
NSTPITFLGSAMVTIEIGGSTMRWPFLVSEDKSCPGGLVIGTDLMEEKEEIKLNFKNKTIQLGEDILPMIAAMEYVELPK
RQIEVRLLENYVLPPLSDSLLWGTVNRIFDPTQQFLLEEWSQHEYWPVKIGRTLSQPGSSRLIPLRILNFGNSHVQIYGK
SRVGILEPVYDNEKKANSVEVFMRKDEYVSPEVNWEDELPLLPNFEKKSEKISDKLNLEGTSLSKQGIVSLKNMVDEKSE
AFVKSDGIIGLYKGNIVHQIELEPGTRPVQQRPYTIPHALREEVEKQIKEMLKQNIIKPSSSAWASPIVLVKKADGKSWR
FAVDYRALNKCTRKQTYLLPRIQDLLDVVGGKSLFSIFDLQSGFHQVKMNKKHTDRTAFITHCGLYEFLRLPFGLAGAPH
TFQKVMEEMRQQLSRSFLVYLDDVILGSETENQHLNDLNAFLNVLCEVGMKLRAEKCRWGCSEIRYLGFLISEKGVRLDD
SDLKPILKIKRPENLAELRSLIGMFSYFRRFIRGFAGIMAPIYDLTKKESTRDWNEKHDKILEEMKKRLTSAPILATPKF
GRPFILETDASGTAIGACLLQESVQKEIHPIAFYSRTLNKHEKNYSVVELEALALVSALKQFRVYLEGAGTSTVITDNSA
LTSLFRRKDLQGRLARYQIVLQAFDVNIIYRPGKFNKVGDHLSRYPPEADIEIKSIEVEKKISIDELSKAQKCDREILLK
RQEKEENIKEINGVIWEKIKNDWKILIPQAIKNKIIKEFHEDPLQGAHLGINRTLEKIKRSMHWKGLAKDVADRIRICEV
CQKRKVVGVHMSREEICPIEPASRPFDRVHLDLLGPIQKSFRGHQYIFVAVDSFSKWAIAVPIRNQTATTISEIFLNEII
CRFGIPSLVVTDQGTQFMSSTFTDLAQAMNFCHKPTTAYHQSANGMVERFNRTLADMIATCTEQGKKWMDVLPQIIFAYN
TSYNQQINNSPFYVIHGFVPKLPTEATLGIEKEKFNDMNLYVKNLVENLELVRSDVKCRLQGNMDIMRKQQIKINKKNWE
KGEKVLVKKTENIKKFGDKYEGPFTIVELQCPNLLISDSGLADEAWFVHMDRCKPFYSEEILNKKDRRVAGDTNLEQSDS
DEEDQIQINSVTNSLGLTAPNKTNAITHNSSFEEDTKKFTNTHATTETNLNINFQIKKDLIKSKNNIILKMPNSNSTSSS
IIIEQQNKLPWHFEDVSSPELSEDEERIMPYSKEDKGKEKDKKIAKNIEDNKSRSAGVKRKKEEQEIANSVDWEMAYRLK
RIRSKYEDDMLTKHNDIWKEILKKGDQFHSKIQDKLDKERKALEKERKEKKKGRKNEKKQTRKEAETEAEIVKKKLDDGK
KKPREAEMKNEGDTKPKEKKTGVGDFAKFASRVVQRAVVDKIDDVVPEELPEDKEKIIKKKEEEEKLLKLGKYQEKMKSR
RKDFDEEFVARGYKTREYSMSPVRRSVVGYIDEKDKKDKMGKIKAKENKKVEITTKEIGVNTVFNTLVFNRILENLDEVQ
EFLTLKPTAK
>Gypsy-3_AA_gag#LTR/Gypsy 1467-2729 [Aedes aegypti]
MAGPGDNWKEEINRYIQQALTEQMGALMDKLGPMLANQRTSTPAAPPSPPLPPPPPLTPPQVTASAQQYHPAPPISSYPV
GEPSREQGQLGNMQPNYRQRFYPNSIASHVSMAGEIEPTRGSQPSHDSRYRWQVPVSKWRINFSGDTRGPTVTQFLNKVE
ILARNNRISDQELLSQANFFFRENSEAEEWYFMFCSKFTTWAGFKHLLRLRFEQPNKDMVIERQILDRRQQANETFNAFL
SAIEKLAQQLTKPLSEERKLNILTENMRDCYRPFLTIYRIERIDELTTICHSLDKSMYRTYSTHTRNRPPQVYNVEDTEQ
EWEEEVDQEEELNAIGQVIRKNRITEKSKDVPNTLPKTSPNSENNVLCWNCRQYGHFWRNCDKAKKIFCHFCGQTNYIAA
NCPNNHFFPNSQQGNENSGRL
>Gypsy-5_AMi#LTR/Gypsy 23-4002 via tfasty with Gypsy-3_NV, 1 frameshift. [Crocodylidae]
MSSYGKIEEFNPDTEDWQQYIERLGHYFQANEITDGDKQKAIFLSVCGSKTYSLLRSLLQPQKPGDKSLAELQKILSEHY
TPKPNTIVEHFKFHNRRRKEGESILEYIAELKKLTEHCSFGNVLEDMLRDRFVCGVGDVKIQKQLLADGDLTWDKAVKVA
TAMEAAVKNVQDLHLDNKETQHEPINQVQSSQQKFRDLERCFRCGGMHSASVCRHKMSQCHKCRKMGHLAKKCKGGYLAA
QQGQAKEKGRKQKAYHVQEDEGEEADEEVHTVYCVMEDKVEPYRVTVQLNNQPVCMEIDTGASVTVVNEETYQQCKAGLS
PLEKTRAKLKTYTGENIPVIGSVSVPVTYKGQQKTLKALVVKGERPNLFGRTWLKKLRLDWEEICKLDLQEMPALKEILG
AYPAVFQEGLGTLKGIKARIYIQEGSQPKYFKAGPVPYALRERTETELDRLELEGIISPVQFAEWATPIVPVAKPDGTIR
ICGDYKVTVNQVSKLDNYPIPRTEDLLAVLGGGQHFSKLDMSQAYQQMELEEDCKKFTTINTHKGLYQYNRLPYGVSSAP
GIFQRVMENLLKEIPGVVVRIDDILITGKSDKEHLATLKRVFQRLEEAGLRLKQKKCFFMRPEVQYLGYKIDKEGVHPMA
DKVTAIEKAPAPQNTSELRAYLGMLNYYHRFLPNLSALLEPLHHLLRKGTSWHWGGRQEEAFRESKRLLKSSELLVHFDP
SKELILSCDASSYGVGAVLSHKLNDQEERPIGYASRTLNKAERGYSQLEKESLAIIFGLKKFHQYLYGKAFTIITDHKPL
VGLFKENKAVPTMAAARLQRRALTLAAYEYKILYKAGHQHGNADTLSRLPLPDSAPTEERPREVVLLLEHLEQTPVKASQ
IKMWTRQDPILSRAMRYTLQGWPKQNPGGELRPFWTRSTELSIEDGCILWGMRVVVPPQGRQKVLAELHEAHPGISRMKA
LARSYVWWPRLDEDLEKVVKHCPQCQVHQQSPAQAPLHPWEWPGQPWFRLHIDYAGPYLGKMFLIIIDAHSKWLEVYPMN
STTSEATCDKLRQTFATHGLPVVLVTDNAPNFTSHEFKEFLSKNGIKHIQTSPYHPASNGLAERAVRTFKEGMRKMTRGS
LETKLARFLLKYRVTPQTTTGMSPAQLLMGRRIRTHLDLLYPNMEEEVRKKQTLQKHNHDYHAKERVWGVCDPVYTKNFS
TRQPTWIPGRIQEQTGPLSFKIGVSNGQMVRRHQDHIRLRTNLPEGPEPLPEKEGFSEDPELGRMTENSEPSNVELSTNS
PSPEVRDAGDRHILPRPEEKPVPEEGRYPARERRAPSYLKDYVRVVN
>Gypsy-4_PD#LTR/Gypsy 86-4825 via tfasty with Gypsy4-PTR, 5 frameshifts and 1 stopcodon. [Phoenix dactylifera]
MSTRSGRPYNXERQLAEEMXELTQQVATLNQKVDAVWDRLFPEPNNLEDDHGVPAHPENPEVPFGGEPDVEAFSPRGLSP
QRPPRGQRMPPPNIPRMGNNFGNPYVHQNQQERNDFDDAMKRVRVEVADYSGSMDPTHFQDWLMSLEDYFEWFSMSNETK
VRFVKMKLKGQARVWWHSVEEKLHRLRQPPINDWEEMKLRLKEKFLPLDYEETLFEELLKHRQGSSSVEEYTARFHELMI
RSNLTETERQSLTRYRSGLRDDIKRELMTTRIFSLEEAYQLAIRVESQLRQRRPAQAPVARRFSERSTNRGVPFPRGNAP
VFRSETSVNRSTYQDRGATRANEKGKGPMPQSTPQGKNPVECYKCGGRGHFAVVCPTRDQRFALVCEEDEIIGPSEVPPS
SQPADEEGNEGSEEHDEEAPAVELEASDLPVCVVRRILTGCKQEENVEEDWRRTNIFHTRVEHANKSLNLIIDNGSCMNI
ISEDVLKKLNLKSVPHPKPYRVSWIEDSSIPVKQRCLISFSLGKDFRDEVWCDVLPMKACHLLLGRPWLYDRSVEYDGRS
NCYSLYCANKRIVLKPLRIADFTSENLIIQRVLTMRKFEACSREIGVMYALVSRKVGAEISEVVPPDFKSILDDFSDVTP
EDLPKELPPMRDIQHAIDLVPGSSLPNLPAYRLNPREHEELHRQVQELLDKGFIRESLSPCAVPALLTPKKDGTWRMCVD
SRAINKITVKYRFPIPRLDDMLDLLHGSTIFSKLDLRSGYHQIRIRPGDEWKTAFKTKDGLYEWMVMPFGLSNAPSTFMR
VMNQVLKPYIGRFVVVYFDDILIFSRSREEHQQHLRQVLHTLRSEKLYVNLKKCFFAESQVPFLGFIISDQGVAADPEKV
RAIREWPQPSNIHEVRSFHGLASFYRRFIRNFSSIMAPITNCMRAEFFHWTPAATKAFEEIKERLTQAPILRLPDFDQLF
EVACDASHVGIGGVLSQEGHPIAFYSEKLNDAKRRYSTYDIEFYAVVQTLKHWKHYLLHREFVMYTDHDSLKYINSQKKL
SARHARWVDVLQQFNFVLKHRPGAENRVADALSRKTHILTLLNAEVTGFEDLKILYSTDAYFQPIYAEISAGDQRQHPEF
SVHDGFLFRGTRLCVPETSLRDHIIREVHGGGLAGHFGRDKTIAMVEDRFYWPTLRKDVSRIIKHCRTCQLAKGAKTNAG
LYSPLPLPSSPWEDLSMDFVLGLPKTVRGHDSIFVIVDRFSKMAHFVPCAKTYDASRVADLFLKEVVRLHGLPKTIVSDR
DVKFVSYFWKTLWAKLGTRLSFSSAYHPQTDGQTEVVNRSLGNLLRCLVRDHVKSWDLILPHAEFAYNSSVNRTTGLSPF
EIVLGLKPRQPIDLVPLPVNTRTSEGGEDFARHIQDIHAEVRRRLATNTEIYKQQADLKRRPLEFKEGDLVLMRLSAERF
PRRNFQKLHPRRAGPFKVLKRLGPNAYVLELPETWQVSPIFNVEDLQPYEGHHDxSEDPPPVPPSLPRRSAPKDAIEDIL
DDQIVSTRRGGYQKFLVKWKGRPISDCSWLKTEEVQRLNPDLYELYQSRNSTESSLFPAGG
>Gypsy-10_DPer_gag#LTR/Gypsy 92-1483  [Drosophila persimilis]
MRSRRWVHSLRKEDLVQCARACGLRLEGTLTEMRRIFKEWIEKHGEEPEYADALEAWEMKAGGAVTAAQMEDGADPYERL
TLPASAEQVTLWRRPSETQEELIASLAVPVKSRSPSRPRAESGERPTRPAQPEQGSARNPQREEEGRAGEDRRRGLEEQT
TRPSSSSFAHVAKQVREWSFRFDGTAKPLEFLEQIEWSADMYGLELNLIPRAMPELLKGRALMWFVANNRQWQTWNAFAR
SFQAYFLPRGYFEKLLQEVRLRKQRWGEPFKDYMVEMQTLMRPLKCTPEEQLELIRDNSMPDLRVFIRPHRCRDLDHMMT
LADEFEALERDRLEFQRECPASKAKANNPFARPTVTEICRRCQGETAASSDSTGEKRPVPTRRDDQANTNIEAGFVKNPA
QACRRCGSDRHWAQACNGRPITFCWRCGKVGAPTWQCCPKAGNAPRPKPRRAVPGSQDEAPQSS
>Gypsy-15_NV_p3#LTR/Gypsy 6217-7416 Has remote similarity to some Gypsy gag proteins; possibly continues 3prime beyond a frameshift/stopcodon [Nematostella vectensis]
MSMGTWVTLLLLFNLVHTNERPLDNSGKPLTFYPSSLMLGHHVRPLVFYNDTRLIHLSTTMYDVTPYEPSLMENTCHNFQ
TDFFNGIFKNIRSIQQTACRLLSSAGYSNLIECNSFLSRLYKYDTGLDSSMVCPRVFLKNIAECKRWVKANCNSLSANEK
RYYGVSRRRKRESFLCHAGFFGLFRSLHKAFGGKCDGNRIENRKSTLTDISKALRLSQSTTRAVNGKVVYLIKTVDSMAT
KLNRVTEDMKIVKDTFVRWRLTFREFAKKDNCNKNMQMEFLSKYAMEINTAFATILRLSEIRDTVAQFSRITSKTLVGYD
SLPPYINRQVADRLETDPSLIVTKQLLDEGVPLLMEPMVDFTLSDEGKKLSVSQSKLEATMLFTLPIVTSVQHMCTLPP
>Gypsy-15_NV_gag#LTR/Gypsy 478-1641 [Nematostella vectensis]
MAARNPESPESTPRRIETIETPRTPHQQAPDVSPEVLRSLISSFDHLRNAVEYKHLQQQNSLAALETTVEESGDLLGLRA
GMKPPTFSGDGIEDVNDFITRFQRMTEFYRWDDERKLRALPLYLTGNASVWFNSHPRAALNTWDAALTQLKNHFDSGASQ
WLLRQQLDQRVQGKFEPLAQYTADIRRLCQRLKLPKSEWLHQFVRGLRGPLKEYVVLQSPADFETAETQARLRDAVSGPP
TDLATVSDELTKRVINGVTGALAKTIPSSNPSKIAAYEPTPDPSRPPHRPGADNLTRDDIRQIIQQELRKELRRSNPPNQ
NYDRNRRTYTGIPICSQCNTRGHTAYSCRARDSRIPNPRNQNPNYRPSFQRPQWQNNGPPRRLNQGN
>Gypsy-15_SMo_env?#LTR/Gypsy 9601-11073 [Selaginella moellendorffii]
MPPRAAQEQTPSLPPTGSSAPSIGRSDFVLTPPPQAIDSTLEAPSMQDLSWAPPLALHYISRLPNAECFAYKSPRMAKMP
RQDEHVEEISSGDEELDYGQVKLSRELVLSPYDKFWLNAFGLLAYAELLEGEISIEQGIELMQKWYPTEHAFLFRGRVHP
FGLTQFAQIFRLDNKGEIITMSKKDRMPDQYVLPNYTSGRGGNFTYLKPDYHARLKVLCAIIDGRTVAQNASIKIACLLE
AIETGWQINIAHFAYNGFVAEMKNVALQVGKGRQVKIGVFIFLRHIYEHYTTQENPMPHLAIEPPPPVSPPREIARDVDV
EENPDDTDSSEENSPLKKKLHLDPKIQAARPPGFVPQKSSGRVCRRKAGRSKYGDKTPCLDQEQSHDSSTSTETTLMPIQ
ISPSIREVTSTQMDNTRRMMDAKVVEEIPQLRPQSPTHDVPTDVAKPLAVDTTNEVSLGQEDHGQETQQDEEDEATKEGL
GELEEYGLSLL
>Gypsy-16_CSa_pol#LTR/Gypsy 676-3831  [Ciona savignyi]
MPSTMLIPGKRGSRPSVTTATVGRIGSLFSAWDRSFGRHFLVDTGAEISVLPPTGLERRTNQPGPDLIAANGSKIRTYGS
RLISLDLPAGKFKWKFVLAEVTRPLLGADFLRAHGLLVDLKSKRLINAKTFVSTPISTMPQSAPRLNVVSWQKSPYMRLL
AEFPTITTPHFSNSFPKHGVQHFIITNGPPVHAHARRLHPEKLVLAKQEFENMLQMGIIRRSSSPWASPLHMVKKSTGEW
RPCGDYRRLNAATQPDRYSIPHIHDFSARLAGARVFSKVDLVRGYHQVPVAEEDIPKTAVITPFGLFEFLRMPFGLKNAA
QTFQRLMDTVCQSLPFVYIYLDDILVASASFSEHHKHLKQLFKQLDDYGLVINLNKCQFGVEKIDFLGHRVDSDGAQPLP
DKVAAIQQFPRPTSIKSLQEFAGMINYYHRFIPRAASIMSPIYDSLSGKPSKLIWNDKLNSSFTAAKTALANATLLHHPV
PHATTAVTTDASQHSVGAVLQQLIGGEWQPLAFFSKRLRAPELKYSAFDRELLALHLSIRHFRYFLEGRIFTAYTDHKPL
TFAFAKVHTPWSARQQRHLSAISEYTTDVRHIEGMRNHVADALSRCSIGSIELPLDLDYTSLAAAQMDPEIQAYRTAITN
LKLEDIQLGQSNQTLLCDVSAGYPRPIVPKSWQRKVFDVVHGLSHPSIRATRKLVASKFIWHGLHKQVGVWAKQCVHCQK
SKIQTHVRAPLAAYPRVQGRFSHINLDIVGPLPSSQGNTYLLTMVDRFTRWPEAIPMPDATTITCARAFVFHWVSRFGVP
CDISSDRGSQFTSELWTTFNQLLGIRLHRSCSFHPQANGLIERFHRHLKSALMARLTGPNWIDALPWVMLGIRTAPKEDL
RTTSAELVYGSHIKVPGDFFTANQNQEAPRTVIPALRDAVRQLLPSAMSRHGIVRTMVPKTLNSSPYVFLRIDKHRPPLT
PPYEGPYRVLQRTDKTYTIDMGGREQVVSIDCLKPAHLDLTQPVQEHQPPRRGRPPNPNHTETSAQQTMTEEPVTPCTSS
GRHVRPPVRFRS
>Gypsy-16_Crp#LTR/Gypsy 58-4130 via tfasty with Gypsy-23_Crp, 1 frameshift and 2 stopcodons. [Crocodylidae]
MDQQAAGHLGDPMQQLLSVMVQLLQQQQQQAARQITWQEHWVQQQMGATRGSVEWRMPKMTPEDDPEAFLEIFERAAIAA
GLDKTKWAGQLGILLIGQAQAAYRAMPRSDATDYDKVKGEILRRLDITPERQRQAFRAKKPAEVRTPHILWQTLADLLGK
WLRPESTSKEQIFDLVLMEQFIDDLEEETQKWVRRHCPTSSREALQWAEQFDTARGERRRIGGTKTLEPTTRRVADSKAV
KKGGGQGPACFTCGERGHFARNCPQRLRGDPFRDKYQQERHLAPEGAPETEAMDCGVGRHHPALIQPLPQVQAWVEGVPI
QAVVDTGCTQSLVRPSLIKWEQTPRCEGIHLVCLHKEKSFIKWRMLTVRVGEVQCWIPVGLKEGILYPMILGRDWPEIFD
ILADRREGRSDGSGLAGEEDPGTPALPLGELIRSEPFRREQEGDPELTAFWELGPREDTPQVSPTDGPQGTPRIEIRNGL
LYRVKQGRxEGEETPQLIIPRAFRDQLLWLAHKHPLGGHLGRDKTEARLTRWCFWPHLYEDVEKYCRSCHVCQKVNPNRP
RKAPLQPMPVVREAFSRVALDVVGPLPKSVGGHQYILVLIDYTTRFPEAFPLRVVTAAKVAESLMQWVARFGIPREIVTD
QGSNFMSEVLKAFCKVLHIKHLRTTVYHPQTNGLVERFNGTLKGMLRRCTQAEPHKWSLMIPPLLFAVRDAPQASLGLSP
FELTFGHRPRSLLDVQREEWEAAPEHGDRMREYVREIRDRLQAAQEIAQTNLEKAQARQKELYDRKAQPRELRVGQKVLL
MLPDATSKFATQWQGPFTVTRKVGPVDYEILHPGARRERQIFHVNLLKEWSGPEGLLIAPGVEPGEVSIGAHLTPTQRRL
MTGLVHEFQDVFTEHPGRARGVEHQIVTKEGQIVRERWQRIPYHKRPLIEKEVKAMLEQGIITPSRSPWRSPIVPVEKPD
GSLRLCIDFRRLNEITQFDAFPMPHISELVEGIGQAKYISTLDLSKGYWQIPLRREDQRKTAFGTPWGLFEFKRMPFGLN
GAAATFQRLMEWVLAPHQKYAAAYIDDIIIYTDTWEQHMRALRAVLLELRQVGLTANPKKCTLGKRETKYLGFLVGQGRV
RPLMDKVAAIREYKEPATKRQMRAFLGLASYYRRFIPHFAEIAAPLVETIKGQRTGAVEWTHQRRKAFAEVRRALCQDVV
LHTPNFAFPFTLQTDASATALGAVLSQEVDGVERPVAYASRKLNDPETRYSTIERECLAIKWGVEYFRYYLLGREFRLVT
DHAPLRWLHTTKTDNARIMRWALALQPYRFSVAYRPGKANTVADFLSxCGGDTEGEGREPTDRKEEIGRAPNGVLRGG
>Gypsy-15_DWil_gag#LTR/Gypsy 472-1804 via tfasty with Gypsy4_gag, 1 frameshift. [Drosophila willistoni]
MISDCSDEELVELCKEIKSSAESEENKTKMNAQEVFNLMQEAVKSALNAQSQQFSTHLEEKIGDLTRQVNELKMSTPEVE
VFETVKIVPGVECKEPLDIVRSVPEFSGSQAEYVAWRSAATFAYDLFRPYNGSSTHYQAVGIIRNKIRGTASSTLSSYNT
ALNFDAIISRLDFTYADKTPARVIKQKLGILRQGELSLLEYYDEIEKTLTLLTNKKQKLGILRQGELSLLEYYDEIEKTL
TLLTNKTLMTYDTSTALTLMTHREDALHSFVSGLEKSLKAHVLPAKVADDKNKNSVNNQEQSKKSQYHHRGNSNSGHTKN
PHFTKKQNYHGKGNQSARQYNSSKSKFQGRNPYQPFEPMDVDPSTSRFKQPTAYQQRKPFANSTQSRQNVNHNQVVPDGD
EDYESKAEDAVTHFEDEQSDIEACNFLGQHPSSRTSLNNCTGEQ
>Gypsy-10_NV#LTR/Gypsy 21-3915 via tfasty with SUTRVLEP_pol, 1 frameshift. [Nematostella vectensis]
LNPPEFFDFTKPLKWPEWKQKFERYAIATKLTKEEGEIQVSTLVYSMGIEAENILKSFDFGSEADKKDLEKVLKKYDDYF
IPKRNVIHERAKFHQRSQIPGESAESFIRNLYELAEYCEFGDLKDEQIRDRIVIGTLDKELSKKLQMKSDLNLDSAIQMA
RQSELIKSQIQTKVQTNCSKKFTVNHRVPARRVETGSSKNKTRGKKKKNRAKKCDRCARTHANNDVCPAKGKKCNKCNKY
NHFAAACHSPPMNANEVTQPQGDQRFFLGDVESDGTKNPWTVDLLINQKPVNFKIDTGADITVLSESTYNHLPNPPKLEP
ERADISSPGGKLICKGQFLTEAKLNGEAYQVKMFVIAGEQVNNLLGRDTACKMGLVQRVGEVLFDVFGDIGLLNCAPVKI
ELREGAQPYHVNTARQIPFPLLPKVESELDRMKREGIIEEITEPTDWCAPMIPVAKSNEKVRICVDLRRLNESVKRERYV
LPTLDDVAPKMVGATLFSKLDASSGFWQIPLTDESAKLTTFITPQGRFCFRRLPFGITSAPEIFQRCMTDLLKNQEGAYA
IMDDVIIVGKTPEEHDKRLRETLKIIEESGLKLNKEKCEFRKKEISYFGHVINQQGISPNPEKVRAIQALAAPENVSELR
QVTGMINYLGKFLPNLSTVMAPMNDLLKSDTVWQWTEVQQEAFDKVKEMVSTTPVLTFYDPNKAITVSADASSYGIGGVL
LQEDKGTLRPVAFCSRTLTPAENRYSQIEKECLASVWTCERFSRYLIGLESFTLLTDHKPLVPLINCKDLDKTPVRCQRL
LMRLMRFNAKAVHIPGKELIIADTLSRNPLKSNVSDSEDVKAYVDSVVNTRIAKDKLREIEQETQEDSKLKLVLEYVRNG
WPMHPKQVPEEIREYFGIRNELSEVNGKLVFGSRIVIPESMRGYVLDRIHDGHQGVTKCRERARLSVWWPGLSRSIAQKV
ASCEFCLVNQPTQRKEPLRTTPLPDRPWQMIAADLAMSDGQDYLIVTDYYSRYIEIAHTTKSPHTTSKRVIGKLKNMFAR
WGIPELVKSDGGPQFTSKEFEEFSKEYGFTHDPSTPHFPQGNGEAESGVRIAKRILKQEDPFLALMTYRATPTQATKESP
CKLIMGREIRTRLPTLTDNLHPKTPNHKEVRKADEKTKQRYNKSFDDRHGVRSLPVLEEGDQVRVKLDNEKGWKTQGPIV
AADTRNRSYIVETSNSSLLKRNRRHLRPSAGIDQDTIPYELPEEEDVKSDDTQDVDDSTGAEQFDDANTRELKTRSGRTV
KKPMRYIEEFYGLILRL
>Gypsy-10_HM_gag#LTR/Gypsy 40-888  [Hydra magnipapillata]
MDRFMKPDRLGIDPNSADAAKTYNHWLRTFYNFVSTVDDNSIKLNLLINHIEPNVYEFISECDDFEQATSILESIYIKPK
NEIFARHILSTRKQKPSETIDQFLNELKNLSKDCKFTAVTAEQYKSEMIRDAFINGLLSNSIRQRLLENKILDLSSAFDQ
ARSLDAAQQNSNLYSQLTIPTSASIQEIKSPLQKQSTTDNHLAATAKSKQLCWFCGNIRHPRTKCPAREAICHKCKKIGH
FEKLCRSSNVSAAIPKIDDDYFCAKTTQHHISFSKLSIQSLS
>Gypsy-12_SMo#LTR/Gypsy 440-6421 via tfasty with Gypsy-11_SMo, 3 frameshifts and 1 stopcodon. [Selaginella moellendorffii]
MRYTFFLAHHAGNDADAHLNSFETVGIANQEADEADRLRFFPATLQDAALEWYLQAQHSAPASIATWDLLRSAFLAAFRP
VGFAQRVSEELNYIRLLPNESLQSFIIRFRRLVAKKDPPPSEDDQVRFFANGLPPELAFFTKGQTPTTLAEAISTASSWE
QARVSMARFQQPFYSVPSVLGGPPVIPPTFPSLQTSAASQPYPSLTDPASLPFPGTVDYSRLQQHVLPAAATSSSALPQS
QEISKVCDDLETLAKKMSELQLNWIRGVQTPPQPVTERENIWCTRCKGYGHYPSECPSPAPARVKCQHCRRNNHRSEHCI
YKPGTSAQPAPRTPARPSYHVQPQLLQDPSPPLVLQGYTPDLVPVYAAAPARTSNVPGRGRARRPIICFRCRQPGHIAPE
CPNARAPVEYQPICGICNTQGLHAQDDCPHRLHRDQGSQGDPPRRSTAPRNDPVIDTQVVQPCYGTIPALAVAHAAQTAH
ATAPSSSLRLLKRQARRLAATPQPTHAAPAFAPSAYPNAAVAPRPAIQFEALPSPPSRDPNSGNATSFSHASPSDQEDSV
SADKKKKYRRLETRPYDILGDLEHQKPQISFSQLLHAAPELHKVVSSALRGHxEIVVNSAWPLFVDMSAPTINVDIRGHH
ISSATIHGGSGVNLMPHETAAHLDLPAPVPVHFHLRMADQRRVQPLGIITGVKTVIAGIIFFVDYVVLRMNDGNLTYPLL
LGRPWLLQARARHDWATGFLEIGDGNFSRKIQVHFQQRPEASFEVESNDSDSSNDEDDPDEDAPALSTEPSLTSQTTAEV
QAWLFCGSVTVEPSPPLHQVLVADHNAPDECWQCGDLLKILLFLPQWRNGPWTIHSRLTMWCASCRAPCFRLPPPFLRDR
DQPGRFFFLISLSSSPYGCLADLTLPANYIDRAVLSSLGHPISALPDQPAPVNFGGEELEFLGFLMDIPYTFLGKPSVAS
FYVIAPLDYASVMILFGRPWAATALAGFLGLTSSSSAPPELDLCMATVHFAEDPPVADPPIPPAFLQHPAAIWNSPASPF
EPPATTSVNVGTSSEPRELQVGADLSPLDLQQYQKLFHAYKDIFAWSYADLRGINPELGQHRIELQPDAQPRRQRMYRMN
PNYAQAVREDLDKMLAAGFIYPVDATDWLSPIVVVPKKNGKLRVCVDYRKLNAVTRKDGFPLPFTDVVLDNVAGHTTYSF
LDGFSGYHQVLIHPDDQHLTSFITPWGCFCYRVMPFGLTNSPATFQRVMQAAFQRLLGDFLEVFLDDFSVYSDAISHCVK
LEKCFERCRFYGISLNPSKCTFGVPRGILLGRVVSREGLAVDPAKVAIVKNLEPPRVKKDLQAFLGHVGYHRRFIYDFAT
KALPLTKLLKAGVPYEWTPACQDAFELLRGALITAPILAVPDWTVIFHVHVDASAFAVGAVLCQPREGIDHPIFYASRQL
SSAERNYSATEREGLGMIFAIQKYRHYLLGTHFKFFVDHQALKYLVNKPCRTGRISRWLIILQEFDFEVILKPGRAHAMA
DHLSRLPGPPSSQDLEDDPADAALFSCDTTDLFAVDAVPEWYQGIADYLATGEFPADFTVTARKRLIIQARPYSLLHGQL
YILGRDDVLRRCILPHEVRTVITSCHDSPYGGHFSSEATIRLVLQAGYWWPTLHKDVAAYVRTCDPCQRAGRPTRRDLMP
LNPLLPVLPFEKWGIDFVGPIKPASHPSRCRYILVCTDYVTKWAEAEALTEDTAAKVATFLYKNIITRFGCPLELVSDRG
THFINQVIATLVEKYGIAHRKSTPYHPRANGQVERTNKILCDIITKLASASRTDWDQRLLDALWAYRVAYKVTTKASPFQ
LVYGQEAILPLELEIPSLRMAVEHNLDWDNTLQARLDTLLQLDERRLLAFQAREALQKRRKVWYDRHLRAKNFSAGDQVL
LYDSKHWKKPGKLRIRWLGPYRIVEVFTNGSVQLEDLSGNLLPTRVNGARLRKYHERDEAAVELCAPGRSPIGGG
>Gypsy-15_AA#LTR/Gypsy 81-4289  [Aedes aegypti]
MANEELMASLTQMLANALKSSIEAVAGAQVDPAARAAASQPKPPTFSVSEYRSSDNATVSDYFRRFEWALQLSNIPAAQY
GHYARVHMGTELNNAIQFLVSPTDPETLTFNEIRTTLVEHFDQAKDKYVESIKFRAIVQQXSESVSSFVLRLRQGAAHCE
YGDFLDRMLIEQLLHGLESREMCDEIIAKKPATFKAAFEVAHTLEATRNTAKEVRTARPSSIIEATNKLGYEKPKTRKVN
SSSKQNKQFSEKQSDSSVCSGCGGNHTRNMCKFRDAKCYNCERKGHISKVCRSYKRKLQDQSTSQVQSEVLPASQVDVVQ
SLGKIHSVNTSPKLVINVNIDGHTLDMEVDTGAPCGIISEAKLRIIKPHFTLQKSDRQFTSYTGHRIKCLGRLPVSVCIG
TTTRKLDLYVVAEDYDTLFGREWISQFTTEVNLSKLFGVSGTVNSLAIAHSTISXDQQQALSELLANYDSVFGDIAGILK
GPPASVHLKPGATPVFAKARDVPLALKSQYAQEIDKKLCAGVYERVDYSEWASPTHIVVKKNGKLRITGNYKPTVNPRMI
IDEHPIPKIESIFNQMRGASLFCHLDVTDAYTHLPIDEEFRHVLTLNTPTHGLVRPTRAVYGAANIPAIWQRRMETVLQG
LPSVINFYDDIIVFADSFENLLIALRAVFDKLKEHGLRLNRSKCVFGTPALECLGHKIDAXGLHKSDHHIEAVRDAPRPS
NTDELQLFLGKATYYNAFIPNLSSRSRCLRDMFHDESFEWKPDRIAAYEDIKSALISPQVLMPYDPNLPLVLATDASKFG
LGAVLSHRLANGRERPIAYASCSMSATEQRYPQIDKEALAIVWAVKKFFNYLYARKFTLITDHKPLTQILHPTKSLPTLC
ISRMANYADYLAHFNFDVLYKSTKENVNADYCSRITRFPTSSDVNTLSVYQGRKNAEDEFELFTLNQLAQLPIRAEHIAR
ETRKDPSLGKIVQLLENGSELARFGYKAPEAKYTLSASCLLFEHRVVVPAILRQSVLNDLHVSHIGMVKMKGIARSFVYW
PGIDTDIEKTVKACSDCARQAHAPPKFSDHHWQYPKCPWERVHIDYAGPVAGSMLLIIVDAYSKWLEVKVTNTSTTAATI
GILDELFSRHGVPVTVVSDNGPQFTAVEFKNFLQKSGVKFHKLSAPYHPATNGQAERYVQTTKDAMKAMGTTASTLHSDL
NIFLQLYRRAPHATTGESPSKLFIGRNIRTRLDLLKPEDIHRKITAKQGANFRPSFRELDPGQQVYFLSGNCRMDKWIPG
VIAVRLGDLHYEVEYAGKRFKRHIDQIRSRIGRQGSQVTEATISEAPTELDASRRIHFYGNGGTLSSAPTTPSNARNAPA
DQGSPEFHTPSASPMNDAIQRDCSPFILRRSTRVRRPPCKYSP
>Gypsy-14B_AMi#LTR/Gypsy 59-4213 via tfasty with Gypsy-26_AMi, 4 frameshifts and 1 stopcodon. [Crocodylidae]
MQPAAMTPPDVLGQNLQALTQILDAQQQMMERQQDWLRHGLTAFRMPKMTREDDPEAYIEAFERHAIMTGLDKGYWASQL
GALVVGKAQAAYHALPHDEARDYDRVKTAILYRLEINLEHYRRLFRAKKGPEEKRPRLLLQLLRDLFNKWLSPTSCDRDT
LADQILLEQFINDLEECTQRWVHQHSPRNCDEALRVAEAFAASEASYGRERRLPPPPPALSPRDSERKRTMFRGATRDMI
CFHCGKVGHFSKECRSEPAERWCPDNTARGPVEGRKESDQMEPMDCSYVTGGESAVWRRPVVKAWIGKHPVQAILDSGCA
QSLVRADLITPRQGREADPVKVSCLHGETKHVSHQWIRLRVMEYQGELLVGIVPHLACDMLLGRDWTPIYDALERVQDAE
AAGRRLHDREGWLGELEDSEESTDDTDTLDLHDVTSSRQFQEAQEEDAGLRELRTRALNLSTTSTTGPGDAPQFEVRHQL
LYCVHPGRGGEPEKTQLVVPTRFRHTIWRLAHSNPTGGHMGRDKTTARIAQWFFWPGLGEDVARHCAACPECQKAREDHP
ARAPLQPLPIIDEPFSRIALDVIGPLPHSSAGHQYILVLIDYATRYPEAIPLRTVTAPRIAEELVRWMARMGIPQEILTD
QGRNFMSGVLRTVCHTLQIKHLRTSVYHPQTNGLVERLNGTIKRMLHRCIQGDPRKWDLLLPLVLFILRDTPQDSLKCSP
FELVLGHRPRSLLQALREDWELGSGGTKDPTSYHQEFQKRIQLARDLARSNLQEAQLRQKERYDARTKEREFRPGQRVLV
LLPTSSSKLLTQWQGPFEVIHQVGPVDYEVHRPGHLREKQIYHVNLLREWRGPEGWAAFSEAEIEDLGPQGMTRGKAVEE
PERQIQIGGELSEMQKSEVKALVEEFxDVFKEEPGWARGVYHSIQTPPGAIVRERWRPVPHHLSGEIRDEISKMIEQGII
RPSRSPWRSPLVPVPKPDGSLRLCIDYRWLNTMAIFDAFPMPHVTELVERIGNAQYISTLDLAKGYWQIPVAHRDRHKTA
FGTPWGLYEFVRMPFGLHGVAATFQHLMDRILAPHTEYTVAYIDDIVVFTQMWAQHKKALRAVLTELRKTGLTANPKKCA
LAQKQTKYLGFLVGQGTIRPLDDKVETIQKFQAPRTTKQLRSFLGLTNYYRRFVPRFAELAAPLSEALKGPRAGGIRWTD
EMRWNFELLKKALCEEVVIHAPDFHKPFILQTDASETAVGAVLTQEDGRNERPVAYASRKLLPTETRYATIERECLAIRW
AVEHFRYYLMGREFTLVTDHAPLKWLSSTKTDNARITRWALALQPFKFHILHRPGKNNITADFLSRCGDDSKYDVGQRQT
KETTIDTGRNPTQWNKMPQGSLRGG
>Gypsy-109_GM_pol#LTR/Gypsy 3464-7171  [Glycine max]
MLSTLSNSILPMGLYGRGRKLMLFPLKMESFHQLGGIHMKINMTEATAWARITAYMAENRLNTAFEAESQQNMAVEAKIE
DHQNKETKDRRLDCIYDDEPLGFEKNPISEASKMQAQDPLEEVDIGDGSINRPTYISANITSSLKEKLVPLLREFKDCFA
WDYHEMPGLSRKMVEMKLPIKEGKRPVKQLPRRFAPEIMSKIKEEIERLLRCKFIRAARYVEWLANIVPVIKKNGTLRVC
IDFRDLNNATPKDEYAMPVAEMLVDSAAGFEFLSMLDGYSGYNQIFIAENDVSKTAFRCPGALGTYEWVVMPFRLKNAGA
TYQRAMNSMFHDFIDTFMQIYIDDIIIKSSSEDSHLDYLRQSFERMRKHGLKMNPLKCAFCVRAGDFLGFVVHKKGIEIN
QNKTKAILETKPPSTKKQLQSLLGKINFLRRFISNLSGKAQIFSPLLRLKKDEPFKWNEEHQKAFDEIKEYLIKPPVLMP
PSRNKSMKLYIAASDKTIGSMLAQEDDDGIEHAIYYLSRVLNDAETRYTAIEKLCLCLYFSCAKLKQYIKPVDVYVYSHY
DIIKHMLSKPILHSRIGKWALALTEYSLTYKPLKSVKGQIVADFIVDHSLIEMPQDYVDTEPWILYFDGSKHKHGTGIGV
LIISPNKVPTKFKYKIKGLCSNNEAEYEALITGLEILISLGARNVNIRGDSELVLRQLTQEYKCVNEHLAKYFVIASSLL
NHFDYINIEHVPRQENREANDLAQIASGYKMSKEKLTQLIEIKDKLVLPEPLSTKLPMPKLVGASIPQNNEDESMNDLQE
KIQILAIDNMLDNDWRKSIIEYLENPIGNVARKIKYRALNYVIMGNDLFKKTAEGVLLKCLSESEAYLAVSHVHSGACGS
HQAGHKMKWLLFRQGLYWPSMLKDCIEFAKGCQECQKHAGIQHVPASELHSIIKPWPFRGWALDLIGEIKPASSKNQRYI
IVGIDYFTKWIEAVPLPNVDQEAVISFIQNYIIYRFGIPETITTDQGSVFTGRKMKEFAQKTGFRLLTSTPYYAQANGQV
EAANKIIINLVKKHIAQKPRNWNKTLDQVLWACRNSPKESTNTTPFRLTYGHDAVLPVEIHLQSARVQKQMDILIDHYWK
MMSDELVDLDEERLRALEVLTKQKERVAKAYNKKVKSKTFNVGDLVWKVILPMDSKDRVLGKWSPNWEGPFKIIQIYSNG
AYELEELTPQKRTLSINGKYLKKYKPTLLEVKISIE
>Gypsy-63_GM#LTR/Gypsy 21-4513  [Glycine max]
MPDSSPTPSDKLEDALLRLTHQQLTLTSKIDELLHRLPPLSSPTPSPTPVLPPPSLSPASVHKMKLDVPRFDGTDPSGWI
FKINQFFEYHGTPAHERLTIASFYMEGRALAWFQWMSDNGQFTSWSVLLHALQTRFAPSQFEDPTGALFKLTQKGTVSSY
LSEFESLANRVVGLPSPFLLSCFVSGLSPDIRREVQASQPLTMAQAAGLARLQEEKLMDHRPPPRPRPPFITTTTSPRVN
PMTHPPTPVYPLSPSTVPPPTYSPSTITPPTYPPSPSPVPHNNPPLLPTPPRQNPAYKRLSSEEIALRRERGLCFTCEEK
YHRGHKCASRVFLLLVEGDDPPDDQINPIDPQTDPPDPDPAQYTYTQYDPVPAQISLNSLAGHVAPETLRLVGTITEHQV
IFLIDGGSTHNFIQEQLVTLLGLPCQPTSPLRVMVGNGQHLECNRVCANIPVTIQTSQFTVDLYVLPISGANVVLGVQWL
QSLGPVLTDYATLSMQFFYKGRFVELKGDHDANFRQLSSPQFRRFCRTQGPSFCFHITMLPTETPSGDAPIYPPDIRTLL
FRFAALFQQPQSLPPARSTDHHIHLLPQTSPVNVRPYRYPHFQKHEIELQVDAMLQKGFIQPSTSPFSSPVLLVKKHDGS
WRFCVDYRALNAVTVKDRFPIPTIDELLDELGGACCFSKLDLLQGYHQIRMHDADIPKTAFRTHHGHYEFKVMPFGLCNA
PSSFQATMNMLFRPYLRQFIIVFFDDILVYSRTFEDHLRHLETTFEVLLTNQFVLKLPKCSFAQPQVEYLGHVVSVRGVE
PVPSKISAIQQWPIPQSTRDLRSFLGLAGFYRRFIRGYATIAAPLVKVTTLSSFQWSTPAQLAFDQLKEALSTAPVLALP
DFTIAFTLETDASGVGMGAVLSQQGHPIAFFSKPFTAKLLRSSAYVRELCAITTAVRKWRQYLLGHRFTILTDHRSLKEL
LTQVIQTPEQHLYMARLMGYDYDIQYRSGSTNKVADALSRLPEQQSTLTMILSVPCFSFLKELRTQLDAHPDYNTLRQAI
LADPTNHPGFSITQDLVLHKGRIWVPRDLPMIPTLLQEYHATPTGGHAGVTKTMARLLENFTWPRLRDDVTRFIANCLDC
QLTKYEAKKSAGLLCPLPVPHRPWEDLSMDFIIGLPSYHGQTAIFVVVDRFSKGIHLGMLPTSHTAHMVASLFLNIVLKL
HGLPRSIVSDRDPLFMGHFWQELFRLSGTVLRMSSAYHPQSDGQTEVLNRVIEQYLRAFVHRRPGNWGKFLPWVEWSHNS
SWVVSSGVTPYEITYGRKPPSFPEYLAGTSKIDAVEEFFVDRDVTFQSVRKKLLKAQDIMKRHADNARRDVSYEVNEWVL
VKLRPRRQSTVKGTQEHSGKLAKRFYGPFRILARVGTAAYRLELPAAAKIHSVFHCSLLKPFKGNPTPPHVTSLPTQFIN
GQPVITPLAILNYRKTADSYEVLVQWKGLSPDDTSWEDWSALCQAYHLEDKVDFHGPW
>Gypsy-116_DR#LTR/Gypsy 204-4796 [Danio rerio]
MELDIDEFISNPSVQQFNKFRKRDLLQIADVLNISVVSTASKQVIKSAVFIELVKQGXLCEESEQKTEMEKSAVEAAVSA
DSVTVESDLVLQIQLKELELQIKRQEHENHVLQIRKLEMTQKEASSLIDPPAVSSALTQPRDERTSAVLFDPSKHIKLVP
PFRESEVDAYFIAFERIAAKLKWPKDMWALMLQCSLVGKAQEVCSSLPIEESLNYDSVKAAVLRVYELVPEAYRQKFRNY
TKSVKQTFVSFARDKKVLLEKWCAASKTTTFEQLQELILLEDFKSCLPDNLVVYLNEQKVNSISAAAVLADEYTLTHKTA
FSSASSQSYGAPVLVNTEKTFTHSKFGARSIEPRKEQGKNIENRRVCFYCLDPNHLIADCKLWKKKNTVKSKSVANVVLE
TVSNSHDQSCSDASVFSPFVFKGTVSVNPDSATKTINILRDTGAAQSFILENVLPFSSETYSGTDVLVRGIELGCVKVPL
HTVCLTSDLVSGPVQLGVRAKLPVEGVSLILGNDLAGGKVFTHPVVAARPVCEVELGTKFPSIFSACAVTRAQARNSGSD
IDLSDTFMSFPDNPTEFKLSVQPSVFKTDDVTGHEALSMGREQLGKAQRSDPSLVRCVEAAEGKVESDTDDGVQYFWDRG
VLMRKWLSQKAKEVGFSPDYQIVLPSEYRTAVLKLAHDHILSGHLGINKTFTRVAKYFYWPGLRSAVSDFCRACHVCQIA
GKPNQNIPPAPLQPIPVMGEPFERLILDCVGPLPKSKSGYQYILTLMCAATRYPEAIPLRNLKAKTIVKELIKFCSTFGL
PRVIQTDQGTNFKSKLFEQVLQGISVSHVVSSAYHPQSQGALERFHQTLKSMMRAHCVESNSDWAEDLPLLMFAIRETVQ
ESLGYSPAELVFAHGLRGPLKLLSEQLVADNKQMVPVSEYVNSIRERLRNACEKARTNLAEAQAEMKVRYDRKSVSRSFQ
PGDSVLVLLATPGSALQSKFSGPYMVTKKLSDTNYLVCTPDRRKKSRMVHVNMLKAYVKSDAHLPAVKPSLVASSVADEI
EQDFSVPCGRLTNSVILNDLDSHLSYLSSDQKSDIVELLENHRSLFSDIPSQTTVLTHDIDVGDARPIKQHPYRLNPKKR
DLMKAEVEYLRQNHFASPSLSAWSSPCLLVPKSDLSVRFCTDYRKVNAVTKPDSFPLPRMEDCIDRVGPARFVTKLDLLK
GYWQIPLTSRASEISAFVTPDDFMQYSVMAFGMRNAPSTFQRLMRIVLSGVEKCEAYLDDIVIYSSSWEEHMVSLREVFA
RLVNASLTLNLAKCEFAKATVVYLGKKVGQGHVCPVDAKIASIVEFPVPGNKRELRRFLGMSGYYRGFCRNFASVVSPLT
DLLSTERVFVWSDACDQAFRAAKDLLCNAPILSAPDFERPFKLEVDASATGAGAVLIQESEMGIDHPVCYFSKKFTACQR
RYSTIEKEALALLLALQHFEIYLGGSSFPIRVYTDHNPLVFLDRMRNSNQRLMRWSLEVQEFNLDIRHKKGSQNVVADAL
SRVHGAEVEV
>Gypsy-138_AA#LTR/Gypsy 230-4375  [Aedes aegypti]
MTEEDNTKHVVAGPSGSVKIAMNFGSFDNYVAGDDFEVYEERMLQHFLLHDIPEGRKVAFLLTHLGMDTYAILKKLLQPV
NPSTKTYAELVAALKKHFRPDVNKVSERYRFHQADQKAGQIVSEYVVELKALAEKCEFGDFLTEALRDRFVFGIYDSRLR
THLLKQKNLTFEKAVDEALNWELAEKDNKVRENVLSAHVVRSGKSYRSRSKSRSKFANSNGGQKNQYGRRRVCEKCGRDH
EQGKCPAKSWKCFACGRQGRAANVCFSKNSKQNRSGSQDSRRNQTVGTVGAGEDLATEIANLRMQLNSVKNETLLVKSKE
ATETLFVDNRPIEFEIDSGACATVISDSLYRKWFSSRPLFSINDDFSTVTGQGIKVIGGFSADVSKCQRGPSEKLALVVI
ESSKTFRPLLGRTWMDVLWPGWRNKFKESIVSMNRVESTLLDSIRLKYPNVICDDNTPIREFEAEIVMEDNVSPIFHVAY
SPPFQQRPAIEAELNRLCQENILKKVAFSKWASPIVVVPKPNGSLRLCIDCKVTINPYLRSEHYPLPRIDDIFAKFANCN
FFCVIDLRGAYQQLKVSENSQAYLTINTHIGLFQYVRLPFGVATAPSIFQSIMDQILGDIEGCVTYLDDVLIGARTLEEC
KQVLDKVLERLSRFNVKINTEKSKFFVTSVDYLGHTVSSDGIRPNQSKVTAIVNAPAPTNISELQSYLGLLNYYSKFIPN
ISSELRVLYRLLRKDVVFSWDSDCEKCFVRSKELILKNNVLQLYDPNKPIVVAADASPYGVGAVLSHIVDGEEKPVIFAS
CTLSPAEKNYSQLHREALAIIFAVKRFHKYIYGHRFKLVSDCEALKEIYHPRKGTSVISASRLQRWAVILSMYDYEWEYR
PSRNLAHADALSRLPVSGGTEIEELSINRLQECPELPLKTCDVAEFTAKDDVLSKVYDYVLYGWPRKIPDSLHYYYKLRN
SLSCQDNCLFYGDRVVIPDRLQKIVLKMLHTNHDGIVRGKMLGRGLFWWKGMQKDIEEHFKQCSVCDQRRSVPKEKVTSK
WTSCTRPMERIHIDFFEFEGKMVLLIIDSFTKFIEARVMNRTNAEQVNERLEDFFKFVGLPEQMVSDNGPPFSSFEFVQY
WESRNVKIIKSPVYHPQSNGAAERGVQTVKNFLKKRLLEKQGNRELLSRKLNDILAWYNSTPSTATEKSPSEMIFRFKPR
TVLTSINPKTXSCETGTDKVNRKSVTFDESKNAEYVYDVKKKNCLKENCNPNQDFKKGEKVMYRNHFKELVRWIPAIILE
RIGKFLYKIKLLENDSIKNVHVNQLRYPSSIVKTNIAKVPERSSENITIKRRRSESLGESPPRKFQADERQNRCGSNESI
FLRRSVRTRKLPEWFRFEDYER
>Gypsy-117_DR#LTR/Gypsy 141-4880 [Danio rerio]
MASKFELDKFTIAPTEEQLDKCRKDDLFLIADFFDIVVPRNALKKEIREALYMELVKQKILPDANVQGLGVANTALSEEL
EAAEAEFKPTDVASMDPINPPSLTDPQLAIRLKELEVELSRQQYQSQLLHVRAVELETKRDIRLKELELELKTGQNPCPP
SSLTKGSTPVQSPVNASSPLPAVPSVTPVSPNTDFDISRQISLVPTFRESEVDTYFTVFERIAATLKWPRNIWPLLLQCK
LVGKAQEVCSALTLEQSLEYDSVKAAVLRAYELVPEAYRQKFRKHVKNPSQTFVEFAREKTTLFEKWCAASKITTFEQLK
ELILVEEFKNCISEKIVVYLNEQKVSSLSEAAIFADEFVLTHKVAFTSPRSSRAVIDRRGSSRTAVAVSKDDRIAESSTG
SRECYYCHEKGHLIAGCPVLLRKNQRKAQDASKTVAFASTHTSELVDSIDPSFYPFVFEGVVSFSELDQEQKPVHILRDT
GAAQSFILADVLPFSSQSSCNSDVLVQGIELGVVRVPLHTVYLRSDIVTGLVKVAVRTQLPLKGISLILGNDLAGNKVSC
LPEVTEVPCVPEEDVLTREFPSVFRSCVVTRAQARKLDKEIDLSNSFMNSDLPDVENKTEDACLQNLSLESKFDFPFDKQ
RLIDAQRADDTLKSCFAAVIEISDLPNHPAAYFLDGGVLMRKWSPENMKGDWSSVFQVVIPKDYREYVLSVAHDHELSGH
LGIRKTYNNLLKHFFWPGMKSTVSHYCRSCHACQVAGKPNQVISPAPLKPIPVMTEPFEKLVVDCVGPLPRTKSGHSYLL
TLMCSATRFPEAIPLRSLKAPTIVKAIVKFCTTFGLPKFIQSDQGSNFMSRIFRKVMKELNIQHCVSSAYHPQSQGVLER
FHQTLKTLIRTYCVQREKDWDEDVPLLLFAIRNTVQESLGFSPAELVFGHTLRGPLKLLQEQLLSTGQSVTPPKNVLDHV
SSFRERLHLVWKLAQQSLATSQSRMKSRYDKKSVQRSFKVGDQVLVLQPLPGSALQAKFTGPYVIEEKLSETDYVVQTPE
RRRKTRICHINMLKLYVSRPDCKDSVSSPVVTPAVVTSIDVVSPEYSPCLDDLHLGSAYLSGAKLQNSETLESLASKLSH
LPSSSQSELVHLIDKYSSIFSDVPTVTSVLMHDIDVGDHRPVKQNAYRVNPVKREIMKKETQYLVENGLAEPSCSPWCSP
CLLVPKPDGTYRFCTDYRKVNQLTKSDSYPLPRMEDCIDRIGSAKFVTKLDLLKGYWQVPLTERASEISAFATPDSFLQY
KVLAFGLKNAPATFQRLMNQVLANVRNCEAYLDDVVCYSDTWGNHLQTLEEVFSRLQAANLTLNLAKCEFCHATVTYLGK
EVGHGTVRPLGAKVQAIVEFPVPKTKRDLRRFLGMAGYYRNFCKNFSDVVKPLTDNLRKDVPFSWNSKCEFAFECLKNLL
CNAPVLVAPDFTRPFKLEVDASGTGAGAVLLQEDEQGIDHPVCFYSKKFNRHQVNYSTIEKEALALLLALQHFEVYVGSS
PKPIEVFTDHNPLVFLQQMCNKNQRLMRWALICQSFNLQIKYKKGTDNIIADSLSRSHL
>Gypsy-58_NV#LTR/Gypsy 115-4173 via tfasty with Gyps1, 3 frameshifts and 2 stopcodons. [Nematostella vectensis]
MPDTEDENVAASHPQFIQSSTPLPGKLELKGNLGSNWKRFKRVWDNYEIASRLNTQSKALRVATLLTCIGPDVLDIYDGL
PFESEADQKDIDKVLKLLEAYCIGETNETYERYVFNKREQDQGESFDSYLTCLRPLAKTCNFDGLIRNKIVLGINDNSTR
KNLLAESKLTLEKCINICRANETTAKQFKDITSEDISAVESYRRPQRTTGVPQNKGQRDTQHPTINCKFCLKKKHQKKKE
LCPAWMKQCNDCGTANHFSGSSMCTASPKFAQKPGQKPRSRPVHGVEEFSDESDDYFFYVESVGAVNAAQCKRKIFASMQ
LRDEQVxFQLDCGATVNILPVDKYVQIFNDPSHARLKKTNKTLQMFNKTELKPIGTVKIESVNPKNEDAILLELVVVGAQ
AIQQFQLMTINSDNILSVNEFQSTQQDIVSEFGDVFEGDGVLQEKLHLKVNKTVTPVALPVRKVPFAVREPFKRELDRLV
DKGILVPVEVPTDWVSSMVVAVKRNGKIRLCIDPKPLNKALKRNRYPLPVIDDLLAKLTNAKVFTVVDAKNGFWHVQLDE
ESSYLTTFGTPWSRYRWTRMPFGISPAPEEFQRRLDNALQGLDGVMPIFDDILIFGAGDTEAEAIADHDAKLRALLQRCR
xKGVKLNKEKLKLRCSEVDFMGHVIPSDGLKPDPAKLQGIKEMPPSTCKQDVKRLLGMVNYLQRFAPNLFEVTAPLRDLL
KEDNIFQWDSVQERSFEAVKKRISETPVLKLFDPTDSVELQCDASDRGLGACLMQHGQPVAYASRSMTETETHYAQIEKE
MLAIVFGVERFEQCVYGRQVKVQSDHKPLESIFKKSLISAPKRLQRMVLRLQKFDLEVSYKKGTEMVLADTLSRAYKVLP
TGVAEERGETEKDTESINMAQYLAVSSQTQAEIQRATEADDVVRELKAVIRQGWPLAKDDLQVCLRDYFPFRDELTLQNG
LIFKGERLVMPTSMKDEMLEKLHSSHIGIQGCLRRARERVLYWPGMNKAVEDYIARCDTCNTYQAEQGKEPMICHEIPSR
PWEKVAIDMFELDNKDFLVSVDYYSSFFKVDRLASKTAKEVIGKIKAHFARHGIPDQVITDNGQPFASGHFLEFSNHYSF
EHVTSSPTYAQSNGKVENAVKIAKKLMRKAFELKNDPYMALLDWRNTPSECLNSSPVQRIFGRRTETLLPTSTRLLNPKI
PDNVEQKISGQKAKQSYYYNRSAKELKELKPGDVVRIEPPRGIGRGKAWTKAHVERKVDVRSYNVRTEDGRVFRRNRRHL
RRTQEDMKPPTDEPLQPPQERLMPPSPPQGLPQSLTSETPREVQQEQPTATQETASAPVVTRSGRVVKPPVRFQ
>Gypsy-49_NV#LTR/Gypsy 118-3768 via tfasty with Gypsy65_AG, 4 frameshifts and 5 stopcodons. [Nematostella vectensis]
MGENEQPHEIRVLTSGKSIRIQPFIIPTNQLEIGRAWKEWLEDFEEEVEYFEIKTSEDKVRAMKIYGGPEIKKLARNIPE
PTPSADDNDFTRMKRKLNSHFLPKKNKHLARYTFNKQKMETNESIVTYAARMRYQAKECEFGTQEDERILEHLIQTISDG
DLVKRAIEKRWNLTEFIENAGQKEEINKQVNYMKEDFKVARIQTQKKPQAKKPPSQQRSGEARKKDRHKCDYCGKTGAKT
RFVMIRGRMDSPPLMKTLNELGMLKIDPEGCIREPNDLRIKTVKQTTKSEEIAKQFEKVFDGIGCFQDKTGEPIELKLEM
DPEATPVAQRPRNVAYYLQQPLKKWLDQGVEQGIFEPVPEGDPITWCSPLVVQPKPKYTKTDKEKLEPQMIRASIDMRVP
NLSMKRSRCIQAPIREDFTHKLRDCKIFSRLDLRQGYHQLTLEEETRKVATFSTPWGNFRPRRLVFGAKSSQDVFDEAMF
KVFGDIPNCINLASDIPIGGRDEAEHAxTLRTVLQRVKDHGITFNGEKCEFEKQEIEFFGHVFTNKGLRSAPDxVRAVKE
SERPEDKEAVSSFLGMAGYLDNFISASTIAAPLFELTRKETKFHWGEREEKAFQEIKESISSKTTMAYFNHRRHIILRTE
ASYHQGLSAALYQQTDKGMQPVHFISRTMTDTEKRYSQTEKDALAIKWAKERLRIYLLGAPRFRIVTAHKPLLLMFNKAT
AKMPPRIEKWVMEMQDVDFELIYEPGKDEQDPLDYLSRHPLPETGDDSTEKIIKWTVDADHAVVLKRIREETLKDKTPQK
xAERIARCDxEKFRRDKDIQPYYQVRQELLVAEGLIFREERIVLPEVLQRKIVKIGHKLGHLGKTKTKQMLREKYCFPNM
NSMIDTAVHQCFNCQVATKSHKEEPIKQTQIPSKPWETISTDFGGPYPDGHYNLVVIDKRSRYPVVERVASTSLGPVKER
MKNIFATYGTPKRVESDNGPPFNSGDYEEFAKEEGFDPHRITPGHPRANGESEKFMQILNKTERIATLEGKDKYERQEAI
HNMLVAYRSTPHPATGVTPYEAMRGVSVRTKLDYTPPTTERTAKEEAIDARDEDTRRKxRQIERTRIQRRQLILGDYVLV
RQQKSKWSTPYEPAFYTVTSIEGSKVTARSATDSRTVCRDASQFKLANCIINTAEKPERNRVREIHPCSSQRAVINLLKV
QAKRQHRQDGGRKQRNS
>Gypsy-48_NV#LTR/Gypsy 28-3597 via tfasty with Ronin2_Cis, 2 frameshifts and 1 stopcodon. [Nematostella vectensis]
MDTVLKPHRLDLDPNSPTAAKEWKHWLKTFENFIAECGSRAPDRYRTLINYVSHNVYEYIEDCSTYDSAIQVLKQLFIKT
PNEIFARHLLATRRQKTGETLTEFKSLRRLSKDCNVKAVSAEQYREELIRDSFINGLNSPFIRQRLLENRELDLKTAFDQ
ANALDLAQKNSDSYSVPLQTASVSAVPDRxKLRTLTMKFLSPLLRIGRPRDATCGGPLHNRKDCPAKNCSCNNCGKGGHY
AKVCKSKGAAKGTAASICSISAACPESLAQASVEASIAGHSLTALVDTGSSGSYINEGVVQRLGLQVNKSTVQSVSMALS
SITTQVTGHCLVDLTVKEHTYPSVRLGVLKNLCSDVILGLDFQRSHNSVIIQFGGTQPDLKITHEAPACALSAAEMEEPS
LFANLLPDCKPVASKSRQFGKEDREFIEQEVNSLLSEGIIEPSASPWRAQVVVVKDPLQRHKKRLCIDYSQTINLYTELD
AYPLPRIDDMVNTLANYEMFSTFDLKSAYHQVPIKETDRKYTGFEANGRLYQFRRIPFGVTNGVAVFQRAMDKFIDEEGL
KDTFPYLDNITVAGRNQKEHDENVRKFREAVQRRNLTLNESKTIESKSSINILGYCVGRGVITPDQERLRPLQEFPPPQS
SQSLKRVVGMLAYYAKWIPNFSDKIQPLSQATTFPLNAAALNAFNALKKELESATLHSIDESVPFEVECDASEVAISATL
NQGGRPVAFMSRTLQGSELHYPPVEKEAMAIIEAVRKWRHFLAGRHFTLETDQRSVAFMFDNRKRTKVKNNKIQDWRLEL
ASFSYTVKYRPGKDNVAPDSLTRAFTASMPTSSLAEIHAALCHPGVTRMLHFVKSKNLPYSTDEVKKTCAACRTCAELKP
QFYRPEASVLIKATQPMERLSIDFKGPLPTSTHNPYILTVVDEYSRFPFAFPCPNMHSSTVIKCLEQIFTLCGTPSYIHS
DRGASLISQELKEYLSARGIASSRTTPYHPIGNGQVERYNGIIWKAVQLALKSSNLPVTKWEQMLPDALHSIRSLLCTST
NTTPHERFFNFQRRSTHGTSLPTWLQLPGPVLLRRFVRANKNDPLVDQVELKDANPTYAHIQYADGRESTVSLRDLAPCP
PQNTAPQMSQEGTFQGQAAPTPTTPPTDSGLKTPAPILPDPDLVAEVESGPANLLRRSTREIRRPSRFDC
>Gypsy-50_BG_gag#LTR/Gypsy 164-1552 [Blumeria graminis]
MEYNPWDLESTGIPRYQQKASVVERFKDRDAEFVKRYPLLCSVPSQELLIQAMQSGIPGNNAVQLSEEVMTLATSYVQLD
TELFQSKNEYDALIEKFQELKDANSKLDRQKRAAGSSSSQLQQQNANLQQQASTLQQQVSSLQQNVTNLQQQNQALNQPP
SNPPQNAHSIHRSAEHPDPELFSADDPKQRKDLPLFIRKVNMKLNTNADWYPSEQSKMVYVISRLRGKAYSTIAYGIKRD
GTVQFPSTDAILTLLEQSFSDVDEINTARREILLIKQGHKDTATHIIDWFEIAQKTGLSDNALINHLYDSLHLEITTQIR
NRVMLRQVMPTDLTSYLVEVRHIDAVLRSSDPNYTKSKPVSGTYFPSTLPSSATTSTPIGEPMDLSSATTIPKTTWTAVD
AATHRIPRTEAEKCAKRAYCFENKLCSWCYDPGHRARVCAEARWNKDKPRNADKKTVIEEGKA
>Gypsy-53_NV#LTR/Gypsy 91-1161 via tfasty with Tngr2_gag, 1 stopcodon. [Nematostella vectensis]
MANVEELAATVAALQALIDELTAENAPTPDSSASTSSSAxTLGGPVRVLKVDFPRERKARKYDGTKDDKVLEDWAEDAQR
AVDAMKLEGRDAADFLFGSLDGAARDEVRLRSRDEWETPEQLFAVLRETFGEKLTAKQLLQRFYGRRQGKRESIQDFSHS
LIVLMDKIQKCHPGTFANPDKDRTLRDTFVENLRDQQLRRDLKRMIRESPDRRFQAVREEALRSAEEDRPPPRIAYSGEV
EAESAECQQVTAPQSKLIQELLASQKVLTEGLQRQQQVLADTQASLATLANRVQGREARWSALTCYTCGRVGHISRFCTS
QQDQATPRNQTTGRNSGRKRQERKKEDESSNSNALQQ
>Gypsy-52_NV_gag#LTR/Gypsy 549-1624 via tfasty with Gyps2_gag, 1 frameshift. [Nematostella vectensis]
MMVAQGELLKAAEEKMKLLQPKGSQEVVIVDSPKDLKDSVSQSKQQPAVQGLQGPMFRREFKIVGAVGSEKDKLSFVGLS
RQIDSGLAKGHSETELVDAVIRAIAPGSKLKGYLEIVSDVTLPKLRQIFRVFYQEKTGTELYQELTTLTQTPRESPQDFL
LRALSLRGRVIFALKAAGAVMRYEPSLVHSLFRHAVETGLRDETIRTKLRGTLTEGITDEELMDTSNKIVSVESERQIKL
GTRSKSGPLLAGALTADQGGEDTKEQKPTKGQQFNLKKTLEGIQADLAALKAKVEVRGVEFDGATKAKSFSKKLCEACSQ
AKLTGCSHCFKCGSEEHFARGCKSKIQGNGTPLRPPDRQ
>Gypsy-168_DR_gag#LTR/Gypsy 17-940  [Danio rerio]
MDPAALQVLSNELTTQAQVLATHQQQLAHLTQLTEELVSTMRNLKVATPAQPTANYSTHQPPVTFTPHHTSPRLAFPDKF
YGNPSKCKGFLLQCKLFVAQQPHMFTDENSKIAFVCSLLSGKALDWATAVWPDNTLTFPTFKEFLQRFCVVFDHPEGGRN
AGEELLSIQQNYQPAAEFALHFRTLAAQTGWADDPLKTLYRKALNPELQTELACRDDGKSLDQLIELSIRLDNLLRTRKH
SPVALSCPSQESTPAPSSSGEPMQLGRAHLSPEERERRIKNNLCLYCGLGGHTKLKCPNKPPSKLNR
>PIGY_PS_env2#LTR/Gypsy 6973-8190 (env gene appears interrupted; perhaps an intron) [Pisum sativum]
TRYPDLNCLQELGLLxGVQWLLRLSDLTFLCTQNHPTYPSLTLEFLSSYSYTTPPGENEYLTGTANFRMFNTEYSLSQDQ
LSAMLHFPVGDQVHPRIPPNSEWNTNAFDLFGKISGVETTNWDALLASHIHNPTIRYFICILQNTIFGRPNNSKVNTKEL
FFLHCIFSADTKVNAASFLLHHIRTFCAPGRQPFVIGGLITTIALGLNLGDRLQNLQSLPPLFMDISYCLSSRLIKNRVG
GKYYLMVNNQEVPSVVLPNITLTDVTNPNRFIYDLNAPEPTKPTQANPPPDEFDEMEQGDQGPEQHSVPHNPSDNVAGPS
SRRRRRRRPATNDDIMDAIEHQAQRLDAMHAQNNEVMQLMRQMQQQQEERNAITDQRFTDLLNKFDDLEVRQRSPGPRTR
GRRQN
>OGRE_PS_gag#LTR/Gypsy 2937-6251  [Pisum sativum]
MDQVQTELAEMRANMAQFMHMMQGVAQGQEELRALVQRQEAVTPPPNQALPEGNPVHDTPAAAIPVNNYAVGEELMGIRV
DGQPIAPDAANARVIHAPARNRIPIVDRQEDLFTMFSEDEDIPGRNDARDRKVDALAEKIRAMECQNSLGFDVTNMGLVE
GLRIPYKFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKSDSIRCWRDLGEAFLRQ
YKHNMDMAPSRTQLQSLCQKSNESFKEYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSCPFGSFSDVVICGE
RTESLIKTGKIQDVGSSSSKKPFAGAPRRREGETNAVQHRRDQNRIEYRQAAAVTIPAPQPRQQQQQRVQQPQQQQQQRP
YQPRQRMPDRRFDSLPMSYAELLPELLRLGLVELCTMAPPTVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDA
NAINFAPVPNVVNNPMPQHGGHRVNNIEGKEAEDLVDNVDDVQTSLLVVKSRLLNEGVYSGCDEDCLGCAESENGCDQLR
AGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGHGQRVVSAPATNGTPVTIPVPVTISAPTTIVASGRRAVENSRAV
PWKYDNAYRSNRRVESQTKPVNQTPVTIGLANRVPATVGPAVDNVGGPGGFTRSGRLFAPQPLRDNNAEALAKAKGKQAV
VEEEPVQKEAPEGSFEKDVEEFMKMIKKSDYKIVDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYVPQEISVNQLEG
VMANVSTRHGVGFTNLDLPPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVLPKQILKKIDVEGFVLTPSDLIVRAFD
RSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEEILVSHLS
SFKYVEVDGEIHETLCQVFETVALEKVAYAEQRKPGVSITSYKQAKEVVDSGKAEGWGKMVDLPVKEDKFGVGYEPLQAE
QNGQAGPSTFTSAGLMNHGDVSATGSEDCDSDCDLDNWVRPCAPGGSINNWTAEEVVQVTLLTE
>PSAU3A9_SB#LTR/Gypsy 2-625 [Sorghum bicolor]
IFGLETVKEQYVHDDDFKDVFLHCKDGKAWNKFVVNDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTEDILA
GHFFWPKMRRDVERFIARCTTCQKAKSRLNPHDLKPYLGEGDELESGTTQMQEGEDDEDISTIYTSTPTPTPSPTPLGPL
TRASARQLNHQVSLFLNSCPSYLDNGDTCTLVLLRNDGEDQKHRGLV
>RETROSAT2_orf1#LTR/Gypsy 494-1381 [Oryza sativa]
MAGHPPNHRGEGMIDFVAELARMTLVVGYPDAPEYTTIPPLSGELPHRVRLEVHGYVGTCLANMAVEASGGTADHACQEA
AYLMMARLRERHNYIFHDTAYRYHPSRAHSDGVSSFRPTAGENDTTFGHMCAVMRGLDRMHSDLHKATKALNDGKLMRIV
ALKDEIARLKKENAQLKGLPAPGGVRIRTTPRKRTTAPVRIQLAPRNPPPAAAPAAPPVPPAVPAAPAPAPAFTLSFAPA
SAARGPASGTGGWLSATPSGSGETDLSGSRSRSEGPGDEQEDAFDSTDRRSRSEH
>RAM9B_pol#LTR/Gypsy 211-3849 [Medicago truncatula]
MVDVRRPKKKDAAEIVCFNCGEKGHKSNVCPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPKRAPTTG
RVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCP
LSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMFSLMATLS
IENQAVIDRLPVVCEFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSP
WGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYG
HYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKE
VSFLGHVISGDGIAVDPSKVEAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTCKGKTFVWDVHCENSFS
ELKKRLTTAPVLILPKSDEPFVVYCDASKLGLGGVLMQEGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYLYG
SRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSAMMVREFELLEQFRDMSLV
CEWSPQSVKLGMLKIDSEFLKSIKEAQKVDVKFVDLLVARDQTEDSDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHR
SSLSIHPGATKMYHDLKKIFWWSGLKRDVAQFVYSCLVCQKSKVEHQKPAGMMVPLDVPEWKWDSISMDFVTSLPNTPRG
NDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQ
TDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRTPLCWFESGERVVLGPEIVQ
QTTEKVQMIQEKMKASQSRQKSYHDKRRKDLEFQEGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQILERVGTVAYRVG
LPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVRVVWTGATGESLTWEL
ESKMLESYPELFA
>Ogre-SD1_pol#LTR/Gypsy 7420-10751 via tfasty with Gypsy3_MT_pol, 1 frameshift and 2 stopcodons. [Solanum demissum]
MTCIQNYSPDLKIQSNLRPNPEILSQEIEYDEDEVFEEVSRDFKSFENKSNPNMSETETINLGDHENIKETKISVHARHx
KEDKIQALLDYKDVFASSYDDMPGLSTDMVVHKLPIDPKFPPVKKKLRKLKTDMSVIIKEEITKQLEAKVIRVAQYPSWL
ANIVPVPKKDGKVRMCVDCRDLNKASPKDDFPLPNSHILLDNCAEHEIASFVDCYAGYHQIIMDDEDAEKMSFITPWGTY
CYRVMPFGLKNAGATYMRAMTTMFHDMMHKEIEVYVDDVIIKSKKQSNHVQDLRRFFERLRRYNLKLNPAKCVFGVLSGE
LLGFIGSRRGIELDPLKIKAIHELPPPKNKTEVMSFLGRLNYISRFIAQLTTTCEPIFKLLKKNATVEWTEECREAFERI
KNYLLNPPVLVPPEPGRPLILYMSVLDNSFGCVLGQHDGTGKKEHAIYYLSKKFTVYESKYTLLERTCCALTWVAQKLKH
YLSSYTTYLISRMDPLKYIFQKPMPTGRLAKWQILLTEFDIIYVTRTAMKAQALADHLAENPIDDEYEPLKTYFPDEEVS
CIDEVIHNKDQGWKLFFDGAANKKGVGIxLVLMSESGEYFPITAQLRFYCTNNMSEYEACILGLRLAADMGIQKLLVLGD
SDLLVHQIQGEWETRDPKLIPYQHCLQDLCQQFVSIKFRHIPRVHNEIVDALATLSSMLQHPDEAHIDPLYIQIRDQNAY
CNLVEEEFDGKPWFHDIKTYLQSGECPTNATSNQKRTIRRLDSGFFLSGGILYKKTPDLGLLRCVNAKEASTIMIEVHSG
ICGPHMNGYVLAKKILRAGYYWLTMERDSIRFVRKCHKCQIHGDLIHSPPSELHAMSALWPFSGWGMDVIGPIEPKASNG
HRFILVAIEYFTKWVEAVTFKSVTKKVVVDFIHFNIICRFGIPKAIVTDNAVNLNSHLMQEVCRQFKIEHRNSTPYRPKE
NGAVEAANKNIKRYFVYGTEAVLPAEVEIPSLRIVVEAGIDDDEWVRTCLKQLSLIDEKRMTSVCHGQLYQKRMAQAYNK
KVRPRRFEEGQLVLRRILPHQAEVKGKFSPNWKGPFIVKKVLSNGALYLADIEGKMTEMVINADAVKRYYI
>Gypsy_pol#LTR/Gypsy 1883-4990 [Drosophila fruit fly genus]
RLVEFFRGRSRLPFIERRLAGRTLKMLIDTDAAKNYIRPVKELKNVMPVASPFSVSSIHGSTEIKHKCLMKVFKHISPFF
LLDSLNAFDAIIGLDLLTQAGVKLNLAEDSLEYQGIAEKLHYFSCPSVNFTDVNDIVVPDSVKKEFKDTIIRRKKAFSTT
NEALPFNTAVTATIRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLV
IDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIF
QRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPE
KVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILA
SEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINI
FTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNLNALQNEPQSDAATIHSELSLTYTVETT
DKPLNCFRNQIILEAARFPLKRNLVLFRSKSRHLISFTDKSWLLKTLKEVVNPDVVNAIHCDLPTLASFQHDLIAHFPAT
QFRHCKNVVLDITDKNEQIEIVTAEHNRAHRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQELGET
PIPSYTGEMVHIDIFSTDRKLFLTCIDKFSKYAIVQPVVSRTIVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSML
KNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLDKKTNDTVELILRATIEYNKTVHSVTRERPIEVVHPGAHERC
LEIKARLVKAQQDSIGRNNPSRQNRVFEVGERVFVKNNKRLGNKLTPLCTEQKVQADLGTSVLIKGRVVHKDNLK
>Gypsy-168_DR_pol#LTR/Gypsy 916-4186 via tfasty with Gypsy88_DR_pol, 1 frameshift. [Danio rerio]
ASFQTESVSATSILAINKSAMVVPIVVCCRNTNINTVALVDSGAAGNFMDEAFARNNNIPLTSCDFPLAVTAVDGRPLGD
GKITYRTVPLSLQTGSLHKEELDLLITKSPQHPIILGLPWLQAHNPFISWKTGEITKWSDSCIKNCLCSIVPVQLNNMVT
SPDTSEISMIPDEYKDLAEAFSKKKATTLPPHREYDCAIDLLPGTTPPRGRIFPLSQTETETMNAYIKEELEKGFIRPST
SPASAGFFFVEKKDGTLRPCIDYRGLNEITVKYRYPLPLVPAALEQLRSAKYFTKLDLRSAYNLIRIRRGDEWKTGFSTT
TGHYEYRVMPFGLANSPSVFQAFINEVFRDMLNQWVIVYIDDILVYSEMLEDHHNHVRAVLQRLIKNQLYAKLSKCEFHQ
TCTSFLGYIISADGVAMDESKVNAVLNWPRPKTVKEMQRFLGFANFYRRFIRNFSSVAAPLTSLVKSSNPKLKWNPDAER
AFNLLKTRFSSAPILCHPDPKLPFTLEIDASNTGIGAVLSQKQATSNKLHPCAFFSRKLNSAERNYDVGNRELLAMKSAM
EEWRHWLEGALHPFSVITDHKNLEYIHSAKRLNPRQARWALFFTRFHFTVTYIPGPKNIKADALSRLSEEDPKIEDDQPI
IPDSMILAPISWDIEAEIAQSTAEHPPPPTCPADKVFVPPPLRGKLIEEVHTNPSHPGIAGTLDLILNRYWWPDVRKDVF
VKNCAPCNMNKHSRHSPAGLLQPLEVPRRPWSHIAIDFITDLPLSMGHTTILTVIDRFSKACRLIPIPKLPTALETAELL
CTHFINQVFRFYGLPEDIVSDRGPQFTSRVWSAFFKNLNINISLTSGYHPQSNGQVERLNQEIGRFLRTYCHQHQANWSR
FLMWAEYAQNSLRKAATGLTPFQVILGFQPSLFPWSGEPSELPALDHWFQQCETTWNAAHTHLSHAVRRFKEQADRHRRP
SPTYTPGQWVWLSTKDLRLKLPCKKLSPRYVGPFTIDRQITPVSYRLNLPNHYRISPTFHVSLLKPAAGPAEVDREVAAG
DQGPPPIIIDGEEAYQIREILRSRRRGGHLQYLIDWEGYGPEEQSWINRK
>LycEPRV_env#LTR/Gypsy 6145-7320  [Solanum lycopersicum]
MENILKTLTTLCTKVDSMGLRIQKLEEKEESTSQQHDSKNVELRRSADGKKPELEGDVGKLDKTHDNVCLNAATASTSTT
KGASGIRYTNLNMNKIFDKPFIPKNQKDSLFIPPQIHTYSESLNQDKKAYNHITRSYIENLYKIQNYLNSTPRSPTTKNP
NTDFITQKLQGYNKLIAQPGTNANLVKTCYSYGLLNTVYTQTGDEISTIPELYKAFMNYKRITKGTLFYIKFYSAPAEIL
FDEIKPIIQVIKIGLTRDMIIPEDIGIQQEIQKIEIPEFYANKRVIGIATILNELTNNYLNGNSVWSYYVREQVMIYSNS
KETREQDMEEIRQWILSLLKPEQKPTTRALRKGFISEELLTRYCKIIGQKYPDHICSKCQGEDNVIPDVQIE
>Ogre-SD1_orf1#LTR/Gypsy 1194-3104 [Solanum demissum]
MNPYGKGDKRPKEDQSPRVMILDKAPTLLKAWYENMTNHGKEVVFKRLGFLRSLLYVEPRRDLIEALVHFWDPIKNVFHF
SDFELTPTLEEIGAFIGRGKNLHEGEPMIPKHINGRRFLELLHINENEIGGCLDNGWVPLEFLYKRYGRKDGFELYGKKL
HNNGCRLTWETHSYDAITVAFLGIMVFLKRGGKININLAAVITAFEKKPNITLVPMILADIYRALTICKNGGDYFEGCNM
LLQLWMIEHIRHHPYVVDFKVECNDYIGGHEERIKDHSFPKGIEAWKKYLNNLTADKIVWNYHWFPSAEVIYMSTFRSFI
VLMGLRGVQPYMPLRVMRQLGRRQFLPPNEDIREFMYEFHPEIPLRKSEIFKIWGGCMLSSPHDRVEDRTKGEVDQAYLE
WVHDQPSPKVLPEGSVKGPVDREAEIEVRIKQARLEVERSYRSTLDCLSNDLKNAKEELAQRDAIFEVRVRKHRSTILTL
QEDLGIVISAMEQQEEEYTKEKVQVICTQSRLQNQVKASMEREREITRRFSAYQAECEVERGQRIAERDALHLQIEELQE
QRENLTHEVNTTRHWLQNCYDNMNEARDRVLQLRDALNDVYAGYFHQNNERLGRQTHVLAPHLPKALARIYKGLGDD
>MGRL3_pol#LTR/Gypsy 1403-5785 [Magnaporthe grisea]
PNYCKLPWKGYRYVWRRRRHVGKLIALGKLDSLPGKVWPTTEMCELREKIAAKQRLLEEPIPYDFLRRYLGGDPMLIAAS
ISLNGLNYNTRALIDTGANGYVFISKQLARRLYTTLKAPKIVGFHPQKVGGYDGKASQQIDTAALATFVIQGRRFRETPM
LVLDMPQEMIVGRLFLAEHGILTDCRHRRLQFPESLPSLAVCYRDIDMTQSPDPRSVSPIHQSDADRRDAALEKKDQSAS
RQRMIQRRIQALEKMTERPPSIPRRAKLLARSGQTWEIPTARETYADPNLQEMQRELYDLPRPKVEVTSLSHTQRKETRE
AEGSSRIQKDAKGKYILKRDAVGWYKDRQASVAMIGAIQLMRLVQEDSALYCTSINEIDDVLRQKNAERLLPDDDGDLRA
MLLERVPEHYHDLLDVFSKVESDQVPPFRPGSDHNIQLEGDPRTLGYSPLYKMTEEELEACRKYLQENLQKGFIEPGSTP
WAAPILFARKGDGGLRFCVDYRKLNALTKKDVCPLPLIEETLARISKARFFTKIDIRQAFHRIRMNPEHRDYTTFRTRYG
TFRYNVLPFGLTNGPATFQKFINEILMEYLDDFCSAYMDDILIWSETEEEHQTHVRQVLERLKKAGLQADIKKCEFHVTE
TRFLGFIIGTKGVAVDPDKVAAVKQWAPPTTVKGVQSFLGFCNFYRKFVPEYSRVAKPLTNLTKKAVPFQWDEHCRVAFD
TLKKALTSAPVLAHYQADYETRVETDASGGVVAGALLQQNPNTQEWHPIAFFSETMQQAELNYPIHDKELLAVVRALKTW
RPELMGTKKKFVAITDHKALEYFSTKRLLNSRQAAWADFFSQYNFEITYRPGSENVLADALTRKAEDVQNQKERQEAERY
MAIFRPVDSAGDDLYVVNPFSYWQTVADGGFGVLLAAIEPTGAAGQLLFAEEVLRANEHSPLLEQYRIKARNPEEKHWTL
LHDKHVLYRRRLVIPGDGEWPAKVIREVHGTIATAHPGRNKTRRLVAQQFWWPGMSGMVDRYVANCSCRSAKVPRDKTPG
LLQPLPVPDRQWSTIVVDFKSMPKSKSGNDNLFVMIDALTKRSWAVPCTRTATAKDAAMMYYEGPYRIYGLPTKVVSDRG
PQFVSDLIDEMSKILQIKWKLSTAGHSQTAGQAEIMNAYIDQRLRPHINHFQDDWDKRMPAIDLVQATLPHDSLGGFSPF
EIGNGYPAHMHFDWTQRTELKGLPTRERLTRTEAQAITKKLESYVEAARTHLQMAQQRMCDQANKHRREPDFGVGSAVYI
IKKHWVTDRPSDKLDYPLTRCSYVIKEKRGHSYRLELPDSWKGSRVFHADRLRLDPRDPLDGQAAERPEGEVIDASEDTN
EEEWEVERVISSRVLRGVLQYQVQWRGWDPDPEFYDAEGFKNAAVQLRQYHNAYPDKAGPPMRLEAWEKAALQNRFDPPD
EYDNAPATGNSTASRLRRRR
>Gypsy-35_AMi#LTR/Gypsy 837-4779 via tfasty with GypsyDR1, 1 frameshift and 8 stopcodons. [Crocodylidae]
MHSMTLEDDIEAYIESFERTVIQTGLDRLQWASQLGSLVVGKAQAAYRALLQEEAYDYEKVKAAILQRLELTPDHYRKLF
WARKSKEDHRPRNLMQLLKDLLDKWVPPGKVDxAALADQILLEQFIKDLDEDTQLWVHWHLPRTAAEALRIAGGLHRLRG
GTTxRKNYRSAGTTPKKEDEPQWGPMRHVRRGIICYRCGKTGHVSRECTLGATERWRPTGEATGLKERHDTHEPIEEMDC
SFGRSKEVEGWDHPMVTVWVAGKPLQATLDTGCSQTLIRAGAIPESVIEWCPPVRMRCIHGETEQYERGFVDVRIAGRKG
KLRIGLAPQLDGQMIVGRDWPPSMRYxRKCARRDKTxKMAPGEGWIAEEDSASSDEEEWVSLGTGAEGVHFRMAQEEDDE
LRRIRETEVAWVEEETIRPGMDVSDAYFWVHRGLLYRVKKCPVRGEWTWQLVVPRRLRKRVWRLAHASPMGGHLGADKTA
TQIGQWFFWLGMRDDITRRCEACPECQRVQERRPPRAPLQPMPLIEVPFDRIALDVVGPLTKSSARHQYILVIIDYATRY
PDAIPLRSAMAPRIAEELLKWVSQVGVPREIITDQGTNFMSGVIQAMCQLLRIRQLRTSVYHPQTNGLVECLNGTIKxLL
RRCAQDEPRRWDLILIPLLFALRDTPQASMRLSPFELIYGHKPRGLLQGIREEWESAGxPGVGVQRYQQEMIERLAKARQ
LAQEHLAEAQQKQQREYDKGAHTRDFHVGDKVLVLLPTTADKLLTRWQGLFEIVRQAGPVDYEVHRPGHRKERQIYHVNL
LKAWREPEGWLLSPEDPWEELGPEAGESPEGQEPGGQPAYGPELDARQRDQLRRLVAKFGEVFDEKPGRAQGIQHEIHTP
KGTVVxERWRPIPHHWREKVxGELRKMLAQGIIVPSRSPWRSPMVIVPKNDGTLRICIDFRKVNEVARFDAFPMPHVEEL
LEQIGQAWYISTIDMAKGYWQIPVAEKDRPKTAFGTPWGLFEFTRMPFGLHGAAATFQRLMNHILAPHTMYAAAYIDDVV
IYSQTWEQHLRHVGAVLQEIRQMGMTVNPKKCTFGVQEMNYLGFRVGQGRIRPLASKIDIIRRYPPPQTKRQMRAFLGLA
NYYRRFIPRFAEKTAALTDAIRGKVQGPIGWTPEMERGFEDVKRDLCSEVVVVTPDFSKTFTLQTDASETAIGAVLCQEQ
GGMEHPIAYASRKLNDAETRYSTIERECLAIKWAVNYFRYYLMGREFDLVTDHAPLQWLNKFRHDNARIMRWALSLQPFK
FSVRYRPGTTNRVADFLSRCIERERTEMRRPKAT
>Gypsy-34_PT#LTR/Gypsy 24-4431 via tfasty with Gypsy8-PTR, 1 frameshift and 1 stopcodon. [Populus trichocarpa]
MAEGAGTRYSQLAESLATVKQNQEQYQQNHNSLQQMVEGLAHQLEVVASNVKTLVQMKTVHNSGDPEGSTRQMTNPPFED
NGGIQTRAVRLDFPKFHGEDPSGWVYRANQFFNYHQTNPHHRVLLASFHMEGKALVWFQDIEAAGGISSWEGFVRALQTR
FGSSPYEDPMEALIRLKQTSTVEDYKSQFEALSNQLRGLAESYKLSCFLSGLREDIRFMVRMLNPSNLHIAFGLAKMQEE
NVAALRRTAKAGSIPTRLAIGSSNPHEKRAIVPIQRLSPSQMKERRDKGLCYNCDDKWAQGHKCKSARLFIMECDESSDD
EVPKSEVADGNAGKSKEETLIVDLEPGISIHALSGSPNPKTMRFVGHICGRAVVILVDTGSTHNFMDPSVVQRVHLPSDP
TERLSVKVANGQAIRSDGSCAAVPLHIQGNLYTIDFYILTLGGCDIVLGVQWLQTLGPILWNFSRLQMEFSVMDNPRRLQ
GMTSTGISLVEGEKFGKVSRQNKRGLVIQFIDFENSSLLSIETSVEPQIFDLLNRYSEVFLEPKGLPPTRNHDHHIVLQS
GAKPVCVGPYRYPYFxKTEIEKIVHEMLQSGIVRPSQSPFSSPVLLVRKHDGSWRLCVDYRALNKETIKVKFPIPIVDEL
LDELHGSTIFSKLDLRSGYHQIRVQPEDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNDIFKPYLRKFILVFFYDI
LVYSKNMSDHVHHLQIFLDILKQHQLFAKKSKCCFGCAEIEYLGHLISKEGVRADPTKIEAMLKWPFPTSLKSLRGFLGL
TGYYRKFIKGYGLIAAPLTTLLKKKSFQWTESAKRAFQDLKHAVTSPPVLALPEFSIPFTIQCDASGIGVGAVLMQQGRP
LAYMSQAIHEKALQLSTYEKELMALVLAVKKWRSYLLGHNFKIQTDHQSLKYLLEQKVGTPLQQKWITKLLGYEFVVEYK
PGKENKVADALSRKMEESKEGNLSAITAPANTWLEQLRTNYAIDPKLQQIIKKLEQGSLASQNYKQQDGLLFYKGRLSIP
ASRELREQILHLLHSSPQGGHSGFHKTLHRAKSEFYWEGMRKEVRRFIKECDICQQNKSENIHPAGLLQPLPIPMKIWTD
ISLDFIEGLPNSEGYSVIMVVVDRLSKYAHFIPISHPYTASKIAQVFLANIFKLHGLPNSIVTDRDPTFTSTFWKELFKL
QGTTLKFSSAYHPQTDGQTEIVNKMVEQYLRCFSGDKPKGWVKWLPLAEWWYNTNIHASTKLSPFESVYGYPAPKLIPYT
AGTTQIQEVENTLKTRDEIIRILRANLQLAQDRMKKFADIKRTERSFDVGDLVYLRLQPYKQQSVVQRRNLKLSPRFYGP
YQVLEKIGTVAYRLELPPAAKIHPVFHVSCLKKNLGERQHVVVTLPPTDKNGIIRPEPEEILHRRLKKKKNHAVTEVLVK
WKGLGAEEASWVEYSILVNEFPDLVDKVI
>Gypsy-35_DAn_gag#LTR/Gypsy 689-2161  [Drosophila ananassae]
MGIDRSPDKGAANSSNSCCPICNAEVNAAEVYVTACQHEFHRKCIEAHWKKSLQCPVCKAVCRPKGVKVTEDPERRTRSQ
SRNQPIPDNVGRLTTDDIATTSGSNPISSNESSISANATTLLAMERRLLESLSGKMAELIQNSVADVLTRTLATQNHSSG
MSHPCLPPSEESLQNRIDLENSRIPGRDHTLSPRSQNSQGSNTSDLLNRPDKVVHILNGWKIKYSGKGVSVDNFIYRVEA
LTRETLGNNYTVLCRNASVLFEGKANEFYWRYHKAHGEVQWDSFCSALRLQFRQVRDDGDTEEIIRNTKQKPNESFDSFY
DTVSGLVDQLDHPWIQQKLVRVIKNNLRPEIRHEILNLDIQTVSELRGVCRRREAFMDEVKRSQGYSRSTPFKRDISEFG
EGYDVPETEQSDDEAGIEAFSLLCWNCRKEGHRYQDCISDRRVFCYGCGAPNTYKPNCSKCSKNFQAGTSKSQFRPKAPS
AVRSQATMTEK
>Gypsy-36_BG_gag#LTR/Gypsy 378-1538 [Blumeria graminis]
MATYHDPMSESEAEDDRVQMLQTQIDVLRAELTRRPIAIEKRVIIEKDPVPAEGVRFRPTSLPEYDGNRAHYPAWRQAVL
DIFRMDWNAFGYSDTRAFLIIYTSLKGEAKTKSGSFFEVGGIGGTRRPEDFIAFLDRGNLDDTRSDKACDELYAMKMGEN
QRWSSFFTSWASKLTEAEGDAWSDRNKITMLRNALNETIRRALSGNHLLPRDNYAEWVGIVGQVSQQVEEFATRGRRVVQ
MENLERGANNTRNFQQPISRDRGRYVGRISQGRPYDGQGDVIMGGVNTARPRQTSDNESGLNQYAQQQAPPNRRSRWKTP
DEIRQLRNENRRYRCERKGCNTRVCPVLPAINPVGNNVRTNAVALDPIDEGVYEEHEGYYTAGQAEN
>Gypsy-35_PT#LTR/Gypsy 60-4903 via tfasty with Gypsy4-PTR, 1 frameshift and 4 stopcodons. [Populus trichocarpa]
MPVTRSGNSYAMAINQNLNNPNPPNQNPNNSNPPNQHPNNTNNPNSSHQNPNTQDTDxPQLQYQVDQIATVMEQLIHRLD
LMEERCNREEHGPFNRSGRRAVHRERLGDSDGDVYEEEGNQEFENYEPRVRCHRRNMHRGHTDHGTSYQPLDELTKRMKV
DVPDFLGKLEPNAFEDxLTAIEDYFDWFAVSEDRKVRYVRMKLKGHARAWWGSVEEQLRRTRRPAISNWEEMKERLKEKY
LPIDYEQIMFEEMLQLRQGSLSVDQFTDHVHELTVRSRVVETEQQSLARYRTGLHNDLRKEMWTARLINVEEAYQLALRI
EKQLGPSVGRKVMSWDSKSEFVSKSSTQRLPPLRDQIRSGVSGDYKGKAKASNEGPQCYKYKGFGHYIVVCPTRDKRITF
ICEKELLVEDTVDDTEEEEIDGSILSDEEHLSASELPSCVIHRILTGTRKELQTNPEWLRTNIFHTRMEHNGRVLNVIID
NDSGMNVISEAAIELLGLKTEKHPTPYRISWVNEANSVHVKQRCLVKFSLGKKYIDEAWCDVIPMTVCHILLGRPWLYDR
RVLYDGYANTYSFNFQGKKFVLDPLQISEFDTKKEVVPILTIRKFSRIIEAENMVLLIVNREVKQEDNIIPTDLPTEFLT
MLEEFQDIMPDEVPNRLPPIREVQHAIDLIPGSTLPNLPHYRMSPTENEELSHQIQQLLDKGFIRERLNPCAVPVLLTPK
KDGSWRMCVDSRAINKITVKYRFPIPRLDDMLDLLYGSSIFTKIDLRSGYHQIRIQVGDEWKTAFKTKDGLFEWLVMPFG
LTNAPSTFMRVMTQILKPFLGKFVVIYFDDILIFSRSVQEHLSHVEQILKVLRVEQLYINKAKCSFMRQSAKFLGFIISN
QGVEADPAKVQAVQQWPTPQNLSEVRSFHGLVIFYRRFIRNFSTIMAPITECLKEKKFAWSMAAAKAFTEIKNKMGHAPV
LKLPDFSKIFEVACDASHVGIGGVLSQEGHPIAFFSEKLNDTRRRYSVYDMEFYTLIETLKHWRPYLIHKEFILFTDHDS
LKHLNSQNKINARHARWMNYLQQFDFVIRHKAGTENKVADALSRRPHLLHMFSANIAGFDSIKTEYTSNEDFGSVWNNIS
NQGNSAEKEYVLRDGFLFYKSRLCIPRGSFREFLITELHDGGLAGHFGHDKTFATVADRFYWPRMRRDVHTVVDRCRVCQ
INKGTKQPAGLYTPLPIPDRPWQHLSMDFVLGLPRTLRxYDSIMVVVDRFSKMAHFLPCHKTYDASRVATLFLQEVVRLH
GLPASIVSDRDVKFVSYFWKTLWAKLGIKLMFFSAFHPQTNGQTEVTNRSLGNLLRCLVTDHVTRWDLVLPHAEFAFNNS
VNRSTGCTPFEVVYGFRPNTPLDVISLPSPPRPSEAALDFSSYMRDVHEECKRRLTTHTNSYAAVENAKRKDRQFITGDM
VLVRLRPERFPPGSFTKLHARRAGPFQVTKKLGSNAYVIALPSDFGISPIFNIEDLTEFKGDVENITALPAPTITLVPRV
PEITTPRDEIVVILDHQFVTTRRGGYYKFLVQWKNRPKSDSVWLQASEIKRxHPHLFTAYTSQNLPESNSSGGLAVDANQ
DTGLPTTSGSKPPST
>Gypsy-31_DEl_gag#LTR/Gypsy 901-2244  [Drosophila elegans]
MYRNSDNVSSDEEVLEEYKKLLKTRVERQKSEQNQSERDCHPSTSRVPHIRDSVLDFKNARTQNTEEMQAEQIASMEAAI
ACALQRQQELFDEKLAKIMGELCSLKDKTPKIQTFLEIEIEPGKECNEPLDMVKSVPEFDGKQENYVSWRQAATAAYRVF
EPYKGSSRHYQAVGILKNKVRGAAAAVLASFNTVFNFHAILARLDFTYADKTPAHVIKQELSLSRQGELPLLKYYDEIER
KLTLLTNKTIMTHDATAAAVLNEQHRDDALHAFISGLKKSLKIAVFPAQPRDLPSALALAQEAEASNDRSAFAATFARHS
EEKIFRPSNQRQTGWKNYEQNQSQGAIKKNPHFVRTQKGATNQSGSFKQKPYNSAGPSQPAPEPMEVDTSSRFKQPTAWQ
RGSTRSQQKINFMPEEKTDDEEYDFVAQASTTEIEDELAGEDSCNFLE
>Gypsy-29_DWil_gag#LTR/Gypsy 113-1228  [Drosophila willistoni]
MEAEMDNLRAALLQQEGELNLLRQQNQQQQQQLQQQQQQQQQQPFQWLSNKDIIQQFRQLRQLDDQHDVLAFIKSVEFLM
TLCQGNALLIQFGTSIVANEKVSGTAANFIRQLGMEPSWDQMKTKLMEQMRPRMTYEDVFDRCRFIKVSSLRDLFQEFEK
AKCEINKIYMFDESKPAMYENDKVDRDLLNMLMNKIDTPFRIHVDQGISMHALQTKYSNIKALDDPRAILQRYRKNSNNT
YNKQGNTNANTNISTTHKNATQNNQFASNNNNTKQNQGGQPNTNNNASPPRSDQVNQQSYNRSQPTQNPNFKPNYNNKGN
SSRQTRMSHMSVDTQKNDPTPMEIGTLEEKQAEEEEEEQVNFLIPCLEHPYP
>Gypsy-29_DWil_env#LTR/Gypsy 4358-5759  [Drosophila willistoni]
MCLLPTLSTAMINITPIQAETGFISLGESTVELVSEFKMVLHIISPEEILELTNIIQNNTKILVKKDRHRLDTEIETIKI
KIRSITPNSLARQKRGLINAIGKAQKWLTGLMDDDDRETIMNHLLNNQENQNNIINNINKQVNINNDLQNSINTLKEVIL
DDREKITKTLNNIETYNTMLRTDIMYHDQLLKLKFLHDKVDTILDTIASAKYNLFHPSILTNKEFILYNIDFYKIKLIRM
GVMTYDTNIIIAIKIPTNIITTTVFLITPLTNQKNKRIDMSPERVIKIENKTYTYEEQKTINELKLSSNCIIKRNCKMIE
DVEFKTKLINEGTLLISNAQDNEIQYNCNNTTNSEILRGNFLIEFTNCTVRIDETYYKNNQEIYIQSFANEEEEENSFNF
TEKQTFKDIVLKEIENTKTIKEIKIQTIVSNSFGIVSITLVLLFIGIYSYNKCKRGIQENPSSKGGGV
>Gypsy-29_NV#LTR/Gypsy 26-3937 [Nematostella vectensis]
MGDTDKDERAQLHFPLPESFNSAVNGLQQADNWRKWLRRFERYRIASGLKSKPDNEQVSILLYSMGSCADDILATLKIDG
AKATFEEMTTALNTYFGARKNVIVDRARFNRRVQKPGESFDQFLQDLYRLADDCSYGSLREELIRDRIIVGVEDETLSDR
LQIKSDLTLTQAIEMCRLTEMRKENRDVVRGETRSQNVDFVKKVHPKTPKPKKSQPKGGPQGSAQGKSKCMFCGKQKHDR
QLCPAKNDTCHKCNKRGHWQGVCQSKQAKGNVNELEVESPFLGEVSKSSVEYWKAEIEVDGQPITFKLDTGAAVSVISDQ
EPLLNSYELLVKPKEVLRGPGGSRLSVLGTLDVCLKAQGKEMRETVYVVKNQPHSLLSRNACVKLGLVVRADTNVEEVIP
TPDYRAEFPKLFKGLGKMKTEYHITLKPDTNPVCLFTPRKVPHPLLPKVKQELDKMIQQGVISPVTEPTQWCSGMVPVLK
PNGSVRICVDLVALNRNVQREVHPMFSVDESLAKLSKSRVFSKLDANSGFWQLPLDKESRLLTTFITPYGRFCFNRVPFG
ICSAPEVYQRTMSSILQGLDGVICHIDDTLVHGETQEQHDTRLREVLRRLQEAGVTLNEKCEFSKPSVKFLGHIIDQSGV
RPDPAKTEAIKSFPTPQTVNDLQRFMGMVNQMGKFLPSLANLNEPLRQLLKKENEWAWGESQQQSFTRIKEELTSSRSLA
HYDPNRPTIVSSDASNLGIGAVLLQLQDDGTRRPVSYASRSLSETEKRYAVIEKEALAVTWACEKFTNYVLGMQFTVETD
HKPLVPLLSYTDLSRMPPRILRFRMRLLKYNPHVVYVPGKNQVIADTLSRAPASKPLPEDDTLVEEVESFTSQIITGLPA
TPKRLQEIREAQDANEECSQIKKYXIDGWSTYMPNSLLLRPXWENKGHLAVVDGLLLYDERIVIPRXMRLEILNSIHQGH
LGITKCQARARMSXWWPGITSAITDLVTKCFTCAKHRPEPKEPLMPSSFPTRPWERVAVDLFDLKGKSHMVIVDYYSRWV
EVRKLTSESSETAISVLKEIFSTHGIPDLXVSDNGPQFASNLYEQFAKXYGXTHVTSSPLYPRANGEVERAVRTVKEILK
KNEDPYLGLLSYRTSPLQNGLAPCELLMSRQLRTQLPTLPETLQPKLKMNELVKLKAKGEAYRSNQQLSHDTRYQVKELP
QLQTGDKVWIRDQDRMGKVLTPAKSPRSYIVETEKGSQIRRNRSALVSATPKKPQAPTSEEKPTTQPAVLPAKSDNVATA
APSPITTRSGRIVKPPQRLTNET
>Gypsy-31_BG_gag#LTR/Gypsy 187-1695 [Blumeria graminis]
MMHTPPGKHSNKDGNNKWNNINQRRKSKNKRTSSVDFVHCRAGSPGPSTAIPTRASALRRSPISPLYPNLRDDLQLSPPP
PLQQTSNEDIANILRTIQLQLSEQSRKITVQDELIANLSASKTTHTKKDKGKQPDYHPPVSIIPEVLPHQKVKKSPEEET
NLIYTVPARRRNKFLESNDSHGNADDVGSSHDDTPNRRHSRRTNFSRAPVNDRVYRVPDLSEKLDDGISPTFDAWEIMLQ
GNLSNYACYLTNQIARKTYVFSQTKGTAQSHLTQRMKSDHPQHFHDDQEMINWLSGFFRDPNERETARVSYNKCRMSTSE
SFNHFYSRFSELSSKARIAPEDTLSDLFHKLSPDLHKIAISFMATGPTLSIALQRFTYFDNELKLNREAIASQTRRITPN
PPIHVRSPHQKSSSPNDLARERSLGPLSSHSTLAAQKSSRPLPTTINSEAVKCYNCQKIGHYSTDCTQARRSQSNISSQI
QEIEVDQTTTEDQTQSDSENDEP
>Gypsy-30_BG_gag#LTR/Gypsy 102-1760 [Blumeria graminis]
MVGLNNAQLESLMKDHIAGQTKANENFSEANEAAKAVTKDLSKRIDQRFEETQSQISLLVKQMSAMNDLISKLVSRNEDV
ETKTSSKNSVPFQLSEAGPSENKKPYREELFDFSAGSASRPATRPIVFQPKKRPFTSAQFYETTPNLSNDEQNKDGTINL
YRQSVNEPLNVTEQERKIKRYFPDFFSRSEAENPHGPLKEANRKTRAVFPPQWKLRFADENIMNILYHMQSLMIQHMLPY
SAWAIRIAMEMDEDFISARRTIISQHLDWAGAVDCILKILFDNDVLGSPLTTFARITARNDETQLQFARRLRKAFFSLPS
DVMAGPQTRDILRQHIRLSLPRTWTIISNNLPKLTSAELADRVVQVTRGITRRTLEDDVFKHSESNAPIPISASKGEKLP
AFDASIADPRSYGQDVFASQDIAETDKSYPIHDKRYECFDCGKTGHWAKDCRSMKTAPVESKEQREYAPNAKYTSSRFSD
KFRKTYQSMKNKKYVKPVTPHDRSSKPVTSTFLVEPEDLDQEQISPEGQIEDEQLDDEIEAILHRMRNEEIYE
>Gypsy-38_NV#LTR/Gypsy 49-4227 [Nematostella vectensis]
MTNDTADTSSGASSAATNPNNITVVNRQLSIKPFHINTDTNDTAIRWDKWKKDIERQFRFFGITEPETKKDGLIIYGGPQ
IADLEDSLPELTEQAGDNAYTRLIRKLDKNFLPRKNKDYARFQFGNLIQADKESMAQYYTRIREVAQKCEFTDENEAIRD
HLIKTMRSAQLRLKTIRKNLTLTQILDEAAIDEESSAQAAAIERKLKEESESQRVKQITKRHTRDQHHKECDRCGAKHST
GNCRAYGAECHKCGKRNHYARMCRSGAKTKDETTSERQDQRGKHQSRNFGSRNKGKGRRQIRHVERESDTESSETESDED
INRILKHVNIRKTSTVPSSTKANKCRIWINGVKTTVEPDTGADANVMDEQHLKTLQNAQPEVQLMKTTLKLKTLTEDLPV
IGEINVTIANETRSTVARIAIIGGTIDSLPLLGRETLEELGMVKFDATGRLKQPNKHIHKVQTGNEQLDQIVNNHTQLFS
GIGKARRDGKDIEIHLPMQDDAQPVIQKPRRVPYHLIEPLKKRMKEFVDNDIMEPVPEHESITWCSPLVVQPKPKKPGDI
RVSLDLRVLNKSMQRTRQVQAPITEDFIATFKDCRMFSKLDMNHGYHQFALDEESRKLMTFSTPEGNYRYRRLAFGGVNS
QDLFDAEMNRILSGLQRVLNNRDDILIGGLNEDDHNKNVEAVLKRLEAHNLTLRREKCEFGKTSIEFHGHLFTSEGLKPS
PNKVKAVRECAPPQSKEELVSFLQMMAYLSRYITNFSSRCEPLRRLTHKDARFEWNDEQQKAFEDLKRAITTAPVLIPYK
PERQTLIICDGSPTGLGGGLFQKTDEGYQPVHFVSRTLTDTEKRYSQIEREALAAEFTTTRLNMYLLGSPHFQLATDHKP
LLPLLNNPRAKLPPRIERIVMKMQNLDFTAIHIAGKSNMTDYLSRHAIPDEKQSDSEHYIKAIIETNHAVVMETIQTATR
KDRVLQKLQTALHTGQWDKNDPDLAPYYDLRAEIYTSDDVVLRLDKIIPPESLRDKIITISHKQGHLGITKTKELLRRKY
WFPRMNKRIEDIVSTCFSCQVSTNTHHTEPAKMTSLPERPWETVEADFCGPFPNNEYVLVVTDQYSRYPEVEFITSTALK
PTRKKLKKMFATHGVPKVVQTDNGPPFNSTEFTEFAAEEGFRHKKITPRHPKAQGQVEGFNKLINKIATIANQEHIDVHE
ATYDMLSAYRDTPHPATKKTPYELMMNREVRTKLEHFPTDKPTQDSEIRRNDSKYKEQTKMYHDKRHRATKHKLAVGQAI
LIKRDKKTKAQTPYEPHIYIITEIKGSTVKARRIGDGKIMCRDASRVKQLKSATQNIQEEREEEGRDIKKIPPCFKEQIH
QPIHQPEVTTQPRRSGRKHISIFDRRLRDYSK
>Gypsy-45_BG_pol#LTR/Gypsy 1613-5020 [Blumeria graminis]
GSQNVYYVAVGIDCNSLPPDKYPIREGFGKPHNIFRTRLTIFPSIEFSTFFDYGCPACYISATLAKSLIPYKSNLISSMS
GIGGTGPTVTQDVLVNAQFFLSSESRIHWSQSFIVSVGIVPDGTFPGELTLGQTMFHTLGLQFHSQGKVQLLHMTGQPTL
APIPTKPSHNNISFTIFDNQIVKFHPTTTPTGFKFSKMYIEKFPSLFKKSTRETEVLSRTKHRIDTGDHNPIRLPPRRYS
PVQLEAIREFCKAHSGTIIRKSKSPWAAPLLLTPKKTPTKSDKTVWRICVDYRELNKVTKKHAHPLPNVHDEIQRAAGHK
YYAFLDLENGFWHIQMHEEDREKTAFVTPFGVYEWSVMPFGLCNAPATFQAFMEEVLEPLRPFVAGLLDDVAVWGNSPEQ
LHSRLLLVFSQFTKFGLILNASKCRLFVSSGIFLGFFISENGVTADPDKVSAIRDRPIPSTTSEIRGFVNAASYLRSLIK
DFSKLAGPLIEQSTGPKNAPVVLTSDSRESWSRIRDALSSTPVVKCFDWRLPVVLETDASQKFIGAALLQPRMSTNKKHS
TLHPVAYYSRKLNETQQRYSAQERELLAILLSLQHWRHWVEGSDVTVLTDHESLKSISTKMEQPVRIVRFLDSIEHYGVR
ILYRKGTANVLADYLSRPTEKLFPVVEEEEGINRSTEDLSLARTEIGQQEMIKQPEQLNRIDLQCIYEFLTSNQDLPPRL
TVAWVHKRFTIHEGKLHIIKPSIAGTVGEAPTASGASTILPVLENEDLLGELRKIHENQGHASIGTTLREANRRFWHPEI
PLSAFETIRSCRSCQLMKPPDPALGNLTPIQPAPPLTRWGIDHTQIGPQILLHAIEYSTGWLESRLVTSTDFRNTVPLLA
HIINFFGAPRQLISDNAGAFSGNEAQRFYTQFGIKVTHTTPIRPQSNGKVEQANGVLKSILARLLLDGQSVLPSEALPRA
VAIYNRRISPSGYSPYFLLFGTQPPEEESSYIGYTREPTAQEERDWAEELVRSHAAPIARSYVASMKAVRDRTRGCLQEK
KAIMRTYASGDWVLRVRQRKHKFEPFYDGPWAIAGCHSGNTYSLISPGGYTLSNHYNGSNLFPAYVNEGHPVRSLWYGSK
RMLEQDRSRLKSAAGL
>Gypsy-44_NV_gag#LTR/Gypsy 37-1395 [Nematostella vectensis]
MEITEEEKMKIERDRVVSLLGAETEEITIESLVEKYTAKYNCGLELWKGEFVKIEAFLAHSCKAKVTGSKVIIIKEEPKT
VAPTTTMQYFSKPQFSQFFGFVQTDKGVSYRVWRYEVESARKEAIYSNELIAEQIRKSLQGEAKNKIVGFGPEATLDSIL
DSLDQFYGDNGSVHGDELISQAYKFKQGEHEEVSAFASRLDTQLRKAKEQGAELLKDDDALSKHLSLIFWEGLLFGIRDK
ARHKKDQCKSFSELIEAARYGEREYRVSHPTHTSASCKQAQTSAAKNQAPAWLPEIVAAVTREVRDIMKPQGSHFEQSQP
KVTSGMKSQVYQTTPPNYSWNPPPATFYPQPQGAQGYHLGQPHPYQYQQSYQYWPSQHSSQMFSPQGSALPRTRTLGGSS
PQSPVPESPQVPREYLPTCYRCGEPGHIQRNCTNIPYSGNRKVPLWRGNQRQ
>Gypsy-47_BG_pol#LTR/Gypsy 1384-5225 [Blumeria graminis]
FGKRRTLSEVAPRVFDKSLSEKNIVKRALKNMHSSPFLVDCLVNKSFYTKSLIDTGCLCYSVFDESLVRQHNLKTHEIRG
RSLTLADGKNVANVSKIACIELDIDGRQEKLWGYVMPKLAYPIILGKPWMEKNNVIYLSRRRCLRFGSRKTGMIVRESGW
YEHSSPIVVQNRVAYVQINQIELIDRATFDKILRNYKEYWIGSISTNDITQALQPKARMSREEVTNDLPPEIRDHTDLFL
EDDTDSNDVLPPHRLGLDTKINLQKDAHGREKELPWGPLYGMSREELLVLRKTLSELLDKNWIRASSSPGGAPVLFVKKP
GGGLRFCVDYRALNAITERDRYPLPLIRETLRLTARSKWISKVDVRSAFHRLRIAKGDEWKTAFRTRFGAYEWLVTPFGL
AGAPAAFQRWINKILGNYLGDFCAAYLDDVIIFTEGDILDHWTKVNRVLQRLKFAKLKLDPKKCEFGVKQIKYLGFIINC
DEGIKVDPEKVRAINNWEAPKDVKGVRSFLGFANFYRNFIEDFAQISEPLQILTKKGTPFIWDNIQQVAFDDLKLRFTSS
PVLAMWRDDCTTVLEADASGWATGGCLSQYDNSRKLRPIAYYSKKLTPAECNYDIHDKELLAIIRCVNEWRPELIGLKHP
FTILTDHRNLQYFMTSRKLTERQVRWSQILSQFNFRLEYRSGKLASRPDALSRRSQDLPKSTDDPRLREREFQLLRNEWI
NPNISVIDLGISSVGLSILKKIPEGEKLFDDVELQNLWDQGVKENNSTFLQLYNSMWQEHRLFPASLGLKISLSECQIDS
RGALCFRNRLWIPDWEPLRTALIQRIHDSHISGHPGRDNTLAIISRSFYWPNMSTMVRRFCRNCDVCGRSHVWRSRRQGL
LLPLPIPERFHSELSIDFMTELPARNGKDPTFLMVITDRLLKSVTLEAMNSMSAEDCAERFLNCHFRFHGFPNALTSDRG
SNWVGDFWRHLCKETRINQRLSTAFHPETDGATERMNQEVLAYLRAFISYSQFEWPSMLPTAQLALNNRNNSTSGVSPFF
LEHGYHAEPVQQKHVSVNGALTNPARRAENFLVRIREAQEYASAAMASAQQLMEEQANKSRNPSPLLRLGDKVWLNLKNV
QSPQPKKKLAWMNAKYTVTKIITPHVVELDVPSKIWPRFHVDLLRRASNDPLPSQQQDDSQPAPILINKGELEPEPEQFV
ERILRADKIRRGGGMVRQLLVKWKGFAEPTWEDRADLEDVEALDIFEAKFGKGDGVGENEGARQGKRKKMKKNEDYLKRE
S
>Gypsy-48_BG_pol#LTR/Gypsy 1186-5012 via tfasty with Gypsy-18_BG_pol, 1 frameshift. [Blumeria graminis]
ISRLKSLLPALKLSSTSVVGKSWKESRHFVINCFTYNYESKPVTSRALIDSGASACGFVDAQFARINNLNLKLLEQPRSL
CVFDGTESSAGQITHLAMTSLTINGHTENIYLFVTTLAQFDLVLGLPWLQLHNPKICWAENTILFNNPSCKTHSIKFPAK
VKALAPEEISAIKTAKCATKVPIPSLQIESCDLKSFEESAARKDHAILAISMDDINEALSEKPKVDPAKFLPEVYHKYLS
VFSKDEADKLPPHRPSDHRIILKSGSEAPWGPLYGMSREELLVLQKYIKENLQKGFIRASSSPASSPVLFVKKPGGGLRF
CVDYRALNDLTIKNRYPIPRINETLTLLGKAKYFSKLDVISAFNRMRIAKGDEYLTAFRTRFGLYEYLVMPFGLANAPSS
FQNYINDTLREYLDKFCTAYIDDILIFSQSLEEHINHVKQVLSRLERAGLQIDIKKCAFHVQSVKFLGLIITTDGIKMDP
GKLDAIESWPTPENSKEVSRFIGFTNFYRRFIRGFGSIVMPLTDCLKKDKPFSWSVEQDTAFTLIKKKFREGEVLSHFNW
ERPARLETDASDRGTGGVLLQPDELGSWKPVAFFSRKMNPAESNYEIYDKELLAIVQAFEEWRPELEGSPEPIEVVTDHK
ALEYFMKSRLLSRRQARWSEFLSRFNFKICYRPGSQNGPADALSRPSGSPDPNLQKFLEQRVLKPHNLMPGMGDSQLLAN
VSVEQIENLHSTKPTDKSMTNTVDATTPLTFLERIRQSYCADKSTVAVIKALKDHKAPRIKNFTLAECAFSNGLLFYRNK
IVVPQGEQDHSLTLEIIQSHHDPPAAGHQGAAATYSVIARKFFWHGMLVQIKRFVRNCHTCSRIKPNRKGAQGLLCPLPV
ANERWRHVAMDFVVDLPTSKDWNEVEYNSMLVVVDRMTKQVHVTPCNDLTARNTAYLFYRDCFRLHGLPDTITSDRGSQF
TSEFWKWTCKFLQIDHRLSTAFHPQTDGQTERMNARIEQHLRAYVNFVQNDWVRFLPSAEFALNNHDTQVTGTSPFLAVY
GLHPRSGSELSAPMSSPPAPASIKIERNDAEILISNMQKIEKFITQNIELHTAQYEDQANRTRTAARNYQPGDLVWLNYK
NVRLLRPCRKLDYKNGGPFKIIEPVGKYAFRLELPSSSKIHPVFHVSLLSPVARDPLRSQTSGPPPTLDAEDSNPEYEIE
KIIGSQWVNNELHYLVRWKGYGPEDDWSIPVSHADGFKELAKDFHQLNPSEPKPSDKIPDTTVNTSRRSSRKLRRG
>Gypsy-47_NV#LTR/Gypsy 26-3898 via tfasty with SUTRVLEP_pol, 4 frameshifts. [Nematostella vectensis]
MPDPEDASSSHKLQIQFPLPEKFASGKQGLEQIENWTKWIKRFERYRTASGLKDKTDTEQVSTLLYAMGDCADDILATLK
VDESKASYSEMKTALETYFGARRNVVVDRARFNRRVQKPGESIDSFIQDLYRLADECNYSTLKEELIRDRLVVGVLDENL
SDRLQQKADLTLAQAIERCRMNEMRKENREGEINKSDSSVDFIRRKQPQNNQKKAKPSPKGGSQGGKKCHFCGNEPHERK
DCPARLATCNKCHKKGHYQRVCESKTKAPAPKNVHEVESPGEEDFLFLGEVTGKANDPWIAQIGVNDPTKFKLDTGASVC
VLSDSVPWLKGMKLDKPQQTLTGARGDLEVIGTFQATLKYRQSKTQERMYVIRNQSCSLLSKKVCVDLGLVKLNDVGEIL
QSPQDFRKEFQGLGKITTEYRITLRDEAVPVCLYTPRKVPHPLLPKVKEEIETMLKQNVISPVTVPTEWCSGIVCVPKPN
GRVRICVDLTQLNKGVKREIHPMPSVDESLSKLSQGKVFSKLDANSGFWQVPLDEQSKLLTTFITPFGRFCFNRLPFGIS
SAPEFFQRAMSGILEGLDGVVCQMDDILIHGKDQAEHDKRVRAVLNRIQDAGMTLNSKCEFNKRSIKFLAHIIDGSGIYV
DPSKTDAITRYPVPTTVTELQRFLGMVNHVAKFVPRLADLNGPLRQLLHKDAQWLWGPDQQQAFQRIKEVLASSEVLALY
SPKRETIIAADASNAGIGAVLIQIADDGSRRPVYYASRSLSETEQRYAVIEKEALAATWACERFAQYVLGLKFTLETDHK
PLVTLLNTTELCKMPPRIQRFRLRLMRFSPHVVYVPGKQQLTADALSRAPVGKPLPEDVMLVEEVESYVGKTLHGLPATP
NRLTEIREAQKADEECSLIRRYCMEGWPAYMPHRPLMQPYWEAQSHLAVVDERIVIPQSMRLEILNCVHTGHLGITKCRA
RARSSVWWPGLSTSIQDMVSKCGTCAKVKQDQREPLLPSSFPSRPWERIGMDLFNYQGKIHLIVVDYYSRWIEIKRLYSE
TSENVINVLKELFATHGIPDCISDNGPQFVLEIFSKFADTYAFIHYTSSPKYAPANGEAERAVRTIKELLKKNKDIGLAL
LSYRSTPLQNGLSPSELLMGPVLPSTLQPRNMSSDLKAVRAKEETYRNKQEVSFNRRHRARELSSLNPGNTVWVKDQSKL
GKVLSPTQYPRSYLVKTGEGILCRNRSALVPTTEEHTAEPTEQADDTDEEWPSPQPPLPTISAESSTPANTRVSQTTRSG
RIVRPPKRLDL
>Gypsy-42_DWil#LTR/Gypsy 1380-5434  [Drosophila willistoni]
MDRGEILTLRIEELRIKLRELGLETTGLKAELQSRLLAHYDLIETENDGQEADFASARTIREVPNTDGQRSWFTLKDVEG
SVSEFCGLGSIDVVQWTRELEECALTVQWSQLQLFVYAKQLLKGAALSFIRSKRDICSWESLKVALKNEFGVKVSSAEVH
RRLSNRQLKRGENLYEFLYSLMEIAKPIDLDDESLIEYFVEGIPDPRANKALLYQARTVDGLKVQIETYLKSYDPRKSSK
KTTLESSFHKQGRDNREKSSITKGDRKCFKCGDPSHMMRDCNKKTFTCFKCGKTGHRSFECKGKDTTKVESTNVVDDKLV
KASGKFTDSGLELKEVTYKSIKFNGLIDTGANLSLIRKSVFVELGIKSLTGYSKSLTGIGGSHVMTFGSFSISVKIDGIE
MEVEFHIVPDEDMAYEAILGRTILDHVDLVVTKKGTKFVSIKRKESLCNANKSCAELFKEFESMCMHSAEQNKVEIKSDL
SHISAEIASEVKKLIKSYKPIRNTNTPIEMKIVLTDELPVYQHPRRLAESDQKIVDSTVQEWLEEKIIRPSFSEYASPVV
LVTKKNGKKRLCCDYRKLNEKVVRDNFPMPQMDTVLEKLQSALVYTTLDLTNGFFHVPVEEKSQKYTAFVTQNGQYEFLY
VPFGISNSPAVFTRFIMAVMRESVKNGDAVVYMDDIIIPSVSVNDGLIKLKRVLKIAAENGLRINWEKCQILQSKVNFLG
YIVENGSIKPSKEKTDAVSRFPIPHDKKSVQRFLGLTSYFRRFIEGYAVTAKPLTDILRKDNKFEFKELQMVAFEQLKLA
LIKGPVLKLYNPKLETEIHADASKHGFGAALLQKDSEDGLFHPVQYMSRKTKPCEEKYDSYELEVLAVIGALIKWRVYVL
GLRFKIVTDCNAFTMTMKKKEVPLRVARWAMYLQDFDYQIEHRSGSKMRHVDALSRLSCFLLTDTITHRLREAQLSDDWT
KSIRSLVQEKGYEDFYIENEILLKDPNRELIVVPSQMEKEIIQIAHKQGHFGARKTQDIVEKSYYIPKLKEKVARVVECC
VECLIVNAKTGKKEGYLMPISKGDQPLMTYHIDHVGPMEVTTKRYNHILVIVDGFSKFVWLYPTRGTGVDEVLSCLEKQA
IIFGNPVRIISDRGAAFTSNAFKEYCIRQDIQHLLIATGVPRGNGQVERMHKIIVPMISKLSQENEGNWYKYVGRVQQLV
NNTAPRSTRVTPFKILTGIEMRSPDDPEIRKLITDSLIEELDCGRDEIRAEARKNINEIQQEMKRTFDKNRKWERKYNLN
ELVAIKRTQYGTGLKLRGKYLGPYKVTKVNRHGRYDVEKVGDGEGPCKTSTVAEFMKPWLGSFGSNDLSGQP
>Gypsy-39_DAn_gag#LTR/Gypsy 448-1779  [Drosophila ananassae]
MSDSESEDLVVQLSNLTISEAAERILQEKQSMDPQQMQAIINAAVSAALQVQKQEFEEKLREVTDRFSAETVSAPDIAVY
LPVAVTGDVPCDEGLDAVKSLPEFDGSQGKYVSWRQAALASYESFRRFDGSSKHYQAVLIIRNKIRGSADSVLSSFNTVL
NFDAIINRLDFTYSDKRPLYLLEQELTTLRQGQMSITQFYEELEKKLTLITNKTNMTYETDRARYMNDKYRADALRVFIS
GLKRNLTDVLFAAQPRDLPSALAMAQEIEANHERHAFATQYARSVEEKHLRQAQSRPLQRTPDSNHEQILKKGWKNPYFT
RDQGLQTVVDNRPLEKMDVDPTSSKFRQSTNFQRSQDSAALHALDAQQQITHKRPMNSQRLSDFRRQRVNHLFEEDKSGQ
AEECYNQIASDAVDDIDEEEGADYESDAVHFLGDLPCFRSSNEQ
>Gypsy-38_PT#LTR/Gypsy 31-4270 via tfasty with Gypsy8-PTR, 1 frameshift and 2 stopcodons. [Populus trichocarpa]
MDTRGKSNAEFRTEVNDALARHESSFDQVNAALQAVLTELxAIRTQKHPNTNPPEINPFASESSSQLHSSRNPNTTGQTH
SHLKLSFPRFDGSEPTGWVYKAEQYFEFQDINSAQQVQLASFHLDGIALQWHRWLTKFRGPLLWNEFVQALLQRFGPTDY
EDPSESLTRLRQTTSVAAYQEAFERLSHQVDGLPEGFLIGCFVAGLRDEIRIDVKIKHPHTLAEAIGVARLIEERNLLQR
KTHLQEARERREKGLCFYCDEKFKPGHRCERPQLFMIEDSSNTSLEEEITDTEDIINSEDMPEISFHAIAGAEHPQTLRV
LGQLGNKKVTVLIDGGSTHNFIDQAVVTKFGIPINRSQRFQVMVANREKITCTGQCQSLTLIIQGIAITANYYVLPVTAC
QVVLGVQWLETLGPIEMDFKKLTMSYKTHGEKHTFYGLKHTGHAAFTEKEFHGLQGNGFFLQIIPSHPIIDSSSHPPELK
ALLSEFSQVFEEPTGLPPQRAKDHHIPLQPNSGPVSVRPYRYPYYQKTEIEKMVQDLLKSELIRPSNSPFSSPVLLVKKA
DGAWHFCVDYRALNEITIKDKYPIPVIDELLDELHGSRYYSKLDLRFGYHQIRVRDDDIPKTAFRTHEGHYEFVVMPFGL
TNAPATFQSLMNDLFRPHLRKFILVFFDDILVYSKSWEDHLTHLHTVLKILADNTLFAKESKCRFGVTQVDYLGHVISNQ
GVSVDPTKIQAVVEWPTPTTAKGVRGFLGLAGYYRKFIRHFGGIAAPLTRLLTKDGFQWSAEADLAFQRLKEALTQSPVL
RMPDFSQRFVVECDASGIGIGAILSQQNQPMAYFSEALKGSSLTLSTYEKEMLAIVKAIRKWRPYLLGKPFTVRTDQRSL
KYLLEQRITTPAQTRWLPKILGYDYVIEYKKGSENQGADSLSRVVEFQFLSISFPKAEWxPTLQQEVQQDPFYANFKSTD
PFVVQRDGVWFKKGKVFLSPNSTLIPLLLADCHATPIGGHFGFHKTLARIKQDFTWPRVHVTVKEFLQQCTTCQRFKTDC
MKPAGLLQPLPVPSKVWTDISMDFIEGLPSSQGYTCVMVVVDRLSKYAHLIPLKHPYTAITVAKAFISCVVRLHGIPASI
VSDRDKVFISSFWRTLFQSQGTQLCMSSAYHPQSDGQTEVVNRILEQYLRCFAGDQPRKWFYWIPWAEFSYNTSLHSATK
MTPFEVVYGVPPPSLLTYVPGTSNVQAVDEHLRDRDCLLRELRRNLLIAQNRMKSQADQHRRDVSFDVGDYVYLKLQPYR
QSLVAFRSSMKLAPWFFGPYQVLAKVGTVSYKLALPQDSQIHNVFHVSLLRKYFGPLPPTSTVASLPPVSESANILPQPE
AVLDRRVVNNGKYHPKHEILVKWDGAPVEDATWENERRFIKTYPTFILADKDS
>Gypsy-39_NV#LTR/Gypsy 18-4092 via tfasty with Gypsy19_AG, 3 frameshifts and 1 stopcodon. [Nematostella vectensis]
MEGVQRNIGALEPFDGGDFADYSEHLNSFFVANNIGQLAAGATEAEQLAADKKKVAVAISLIGKNTYSTLKDLCLPDLPA
DKTFHELTTILSCFYKPKVLEVAETYRFHHTAQMETETVTEYANKLKRLAVHCNFGAYLSRALRDQFVGGMRSQATRKKL
LSEDRTFDQALKVAQADELAEKESRHLVDKPGLLEQEVRFVKKKPVGSDTGKKSTLCFGCGSDKHLADACKHKDTICGYC
SKPGHLVRVCFKKKRDEKSRQTHQITTEEHSREPDVVSDSELAADSIYTVYMHHVGGSGEGNAPLYKLAVVIxGKEVTME
VDTGSAVTLINVQDFKSIGGSIQTLKPPTILLKGYTGNTIKCLGESDMCIQVGDQVGDLKIRIVEGPSLLGRDLMSKFTL
PWQNIFSVVPTTTEDIIHQYPALFDTTTVGKLQGVQVSLQVDNSNPVFVKPRTVPFAVRDKYEQSLEKLEAEDIIERVEH
SDWASPTVPVVKPNGDLRICGDYSVTINKHSTLEQYPVPTLEELLGKLAGGKKYTKLDLSQAYHQLDLYPESRKFTTVNT
TKGLYQYKRLTYGINSAVSIFQRTIENVLKGLPGCCVYIDILITGETDEIHLENLHRVLQRLQECGLKLKESKFHFMLDQ
IVYLGFCISAAGISPTPEKVRAIKDAEPPRNVAELQSFIGSANFLRKFVPAFAELASPLYKLLRKDTPWKWEKVEQEAFE
CLKSAMCSDTVLQHYDPAAELVLHCDASSVGVGATILQPGPDGTLQPVAYASRTLSSAERNYSQIERESLAIVFGVTKFR
QYLLGRHFKLLTDHKPLITLLGEHKPVSQLASARIKRWALLLAAYNYTIEFIPGKDNVFADFLSRKPVECEPSSEEQVTV
NVMFIEEEQIVTASMVAMETKKDHVLRKVLDYTRNGWPDKPEKELLPYYYKRLDLSCEDGVLLWDSRVVIPESLQGFVLN
DLHAEHFGIVKMKQLARKYLWWPKLDQQIEETVKACVACQEAAKAPPSSKQAAWSWPGGPWKRLHIDFAGPYLDKMFLVV
VDAYSKYVEIVPMTTANSANTISALRHIFSHFGLPEHLVSDNGSQFTSDEFQKFLRSNDILHTTTARGHPTTNGLAERYV
GDFKDKIGKIGSTGESLQTKLDRFLLTYRATPNATGKSPSELLLNRQPRIRLSALRTRRMKQEVKIFQDNLNNKPKYSQD
QAVFARNFGKGAKWLPGLIVGTFSPRNFDVQVGDVIWKRHEEQLRPRYIPSNQLAPKPLYQTALGNTYRKPNGFPTEISQ
EGESTPQVLLPDLPEMGSPLTMDTEGVETTEATEPVPRPCGTLETLGSMGSEVMTPPGIASPVKRYPSRDRKPPDRFY
>Gypsy-40_DAn_gag#LTR/Gypsy 551-2005  [Drosophila ananassae]
MSDSEIILDDLLLNLNKWSVHQSRRLESSKENNSSENNWWSKKNIDSEMELREAQLKTIVESAVGGALAVQKQSFEKKLQ
ELSEQIQKLTVETPEVETYTDAVIIEGVVCKEPLDIIKSLPDFEGKCETYVSWRKAAHVALKVFEKYEGSSTYYQALGIM
RNKIKGSANTVLASFNTPLNFKAMISRLDFTYADKKPAYLIEQELSTLRQGDMTLTEFYDEVEKKLTLLTNKTLMTSDNA
LAMSLNEKYRVDALRVFITGVKKTLSDILFAKGPKDLPTALALAQEVESNNERYKFALNYSRKLGDRGQRTDHRHNDSDR
NSFMPIQNKNPYFTYDSQERQGRSQSINQDVSMRTIRTGQDKFRQTHFPTQENVWPPLQENVWASEQNNEWPTHNQNAWQ
PKQNARQSQAHTGYAQASKRPNSGTARFTGPKQQRINHLAHGEGQGRKNADDYHQEAEAAVEDFDDELTCYDNVHFLATG
PCYRT
>Gypsy-39_STu_gag#LTR/Gypsy 226-1452 [Solanum tuberosum]
MNTRRANARRMEEEIVNEGVPPQGPQGDQVPLGNQVLVDPPAMTNEEVRSALLMMAQAVTTQAQAMTAQATRGVETHVNP
IVSTMASRLRDFVRMNPPVFLGSKVGEDPQEFVDEVYKVVNAMGVTSIEKAELAAYQLKDVAQVWFTQWKSNRPVGAGPI
DWEVFKKAFLDRFFPREKREAKVEEFINLRQGSMSVQEYSLKFTQLSKYAPSLVSNPRDEMSRYVTGVSDLVEEECRTTM
LHDDMNISRLMVFAQQIEESKLKRKNREMKRARSDEQGQPRFKKRAPNQDSSSTPRVNQEKGSGSPFPKPTCTNCGKKHY
GKCLAGTNGCYGCGKSDHQVKDCPTLTAKGREAKQASLSGPDPNAPKNSRFYALQAREDKGALPDEGTGMLIVPYSCECF
VEVPMLFSC
>Gypsy-1_DPer_gag#LTR/Gypsy 924-2570  [Drosophila persimilis]
MPLRHSPQQNNPLSSENFCGICCSEMSNTQPCFCTPCNHVFHKACLEEWFPHHDECPNCSRVCTLSQAKLVVGNCSPNKP
QPEPTELPGPSGITTRSLAKALEVAQTPANGHFQPETGKVSEGNGKNTQLSQIPTVGSVPVERTTRPTRSKRTRAPAKKQ
VPKFPPGRSSGPEVVCLSGLDASHSSNQTEAPSANVATHSSPWEAPNARTAPPSQGLDLDVLQQIIERTVARAISTLQIQ
PPASPQEGYARPNIPTPVSCINSMTSLRTAKTANIMQKWNVPFDGSTEGLGVEEFIYRVKTLTDETLDSDFLGLCKHLHI
LLVGKARDWYWRYHKQVDRIVWTEFCAALRQQYKDYRSEFMSKELIRARKQHVGEPFVAFHDAVAGLIDKFGIKMAEEEL
IEILKANLLPETRHKILYQSISSVGQLRRLVQMHENLVQELQKSDKSRPPVGRRSIHSLEESRPESDQEEYEDISVEAIQ
SSTAKRSCWNCEELGHVWENCMADRRIFCYGCGAPNVYKPQCQTCIRRASENRQKGASNNSRMPPKNHH
>FFV_pol#LTR/Foamy  gi|9629926|ref|NP_056914.1| pol [Feline foamy virus]
MDLLKPLTVERKGVKIKGYWDSQADITCVPKDLLQGEEPVRQQNVTTIHGTQEGDVYYVNLKIDGRRINTEVIGTTLDYA
IITPGDVPWILKKPLELTIKLDLEEQQGTLLNNSILSKKGKEELKQLFEKYSALWQSWENQVGHRRIRPHKIATGTVKPT
PQKQYHINPKAKPDIQIVINDLLKQGVLIQKESTMNTPVYPVPKPNGRWRMVLDYRAVNKVTPLIAVQNQHSYGILGSLF
KGRYKTTIDLSNGFWAHPIVPEDYWITAFTWQGKQYCWTVLPQGFLNSPGLFTGDVVDLLQGIPNVEVYVDDVYISHDSE
KEHLEYLDILFNRLKEAGYIISLKKSNIANSIVDFLGFQITNEGRGLTDTFKEKLENITAPTTLKQLQSILGLLNFARNF
IPDFTELIAPLYALIPKSTKNYVPWQIEHSTTLETLITKLNGAEYLQGRKGDKTLIMKVNASYTTGYIRYYNEGEKKPIS
YVSIVFSKTELKFTELEKLLTTVHKGLLKALDLSMGQNIHVYSPIVSMQNIQKTPQTAKKALASRWLSWLSYLEDPRIRF
FYDPQMPALKDLPAVDTGKDNKKHPSNFQHIFYTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQ
FAEIAAFEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPDVVVTHEPG
HQKLDSSPHAYGNNLADQLATQASFKVHMTKNPKLDIEQIKAIQACQNNERLPVGYPKQYTYELQNNKCMVLRKDGWREI
PPSRERYKLIKEAHNISHAGREAVLLKIQENYWWPKMKKDISSFLSTCNVCKMVNPLNLKPISPQAIVHPTKPFDKFYMD
YIGPLPPSEGYVHVLVVVDAATGFTWLYPTKAQTSKATIKVLNHLTGLAIPKVLHSDQGSAFTSEEFAQWAKERNIQLEF
STPYHPQSSGKVERKNSEIKKLLTKLLVGRPLKWYNLISSVQLALNNTHVVSTKYTPHQLMFGIDCNLPFANKDTLDWTR
EEELALLQEIRESLQHPVQPPTCSGWSPYVGQLVQERVYRPSQLRPKWRKPTKVLEILNPRTVIIVDHLGQRKSVSIDNL
KPTAHQHNGTRTCDDPEGMDGMECSQTTTETSVDSS
>EFV_gag#LTR/Foamy gi|9634978|ref|NP_054715.1| Gag [Equine foamy virus]
MAQNETFDPVALQGYYPAGGILADNDIINIRFTSGQWGIGDRWLQVRLRLVDPNTGQPLAQPEYEDTGLPAENRGIVVAV
SHNAARNIFNNVQPAGGPNRHGPLHDGQFQVGDDPSEHFVPIEENLIPQEIVNLGAARREVRLLREMCVRLLHVRRQMMG
MGMPGAIQPQPPVGPLPAPAQPPIPGPPVPPPVPPPAPPAPVNPPVPPVQPIHHLPITHIRAVIGETPAQIRDVPLWLAQ
SIPALTGVYPAMDAGTLTRLVNAITARHPGLALGMNEAGSWHEAVHLIWQRTFGATALHALSDVLKGIAQRNGVVMALEM
GLMFTNDDWDLTWSVIRRCLPGQASVVTIQARLDALPNNQARIIQAGFIIREVYEVLGLDPLGRPLNFPGGLTQRDTAVP
VTRGRGRGRTGPRRGPVLPVSSNQRRQETAGGNQPQTQPQQQNTFSNQTNQRGNQRQWQNRGTDSQRRYFFRPRPSQPQR
YGSNQGPDNPNPYRGRDSTNQSGQERQLPQQQQGSRRGPGRNTNSGNNTVHTVRQVESSQLQQNASPTASPSTNQGQQP
>SFVO_pol#LTR/Foamy gi|32812829|emb|CAD67562.1| polymerase [Simian foamy virus-orangutan]
MSLQHLLQPLEAEVKGTKLKAHWDSGTTITCIPTVFLTDEIPIKDVLIKTIHGERRQPAYYLTFKINGRKVQAEVIASPY
DYILLCPADVPWLQQQPLQLTVLVPLEQYKERILKETALEGQFKQQLQNILSTFDTLWQHWENQVGHRKIPPHNIATGTH
PPRPQKQYPINPKAKESIQIVINDLLKQGVLIQQNSIMNTPVYPVPKPDGRWRMVLDYREVNKTIPLIAAQNQHSAGILA
SIYRGTYKTTLDLANGFWAHPITPNSYWLTAFTWQGKQHCWTRLPQGFLNSPALFTADVVDLMKHIPNVQVYVDDLYLSH
DDPQEHLQVLQQVLHILHDAGYVVSLKKSAIAQKVVEFLGFNITKTGRGLTDAFKEKLLNISPPQNLKQLQSILGLMNFA
RNFIPNYAERVKPFYSLISTAKSNNILWNDELTSQLQELITLLNQADNLEERKPTTRLIIKVNSSSHAGYIRYYNEGSKK
PILYINYVFSKAEEKFSMLEKLLTTLHKALIKAVDLAMGTEIMVYSPIVSMTKIQKTPLPERKALPVRWITWMTYLEDPR
ITFHYDKTLPELKDVPSVYQNDIPIVPHPSQYSMVFYTDGSAIKNPNPTKTHSAGMGVVQGKFNPEFQVVNQWSIPLGNH
TAQLAEVAAVEFACKQALKITGPVLIITDSFYVAESANKELPYWKSNGFVNNKKKPLKHVSKWKSIADCLSLKTGITIKH
EKGHQPSHTSVHTEGNALADKLATQGSYVVNNIIKPSLDAELDQVLQGNLPKGYPKHFVYTLEEGKVIVKRPEGTKIIPP
LADRKLLASQAHKLSHSGREATLLKLSNTYWWPNMRKDVVKVIGQCQQCLVTNPSNLTSGPILRPERPTKPFDKFFIDYI
GPLPPSNGYLHVLVVVDAMTGFVWLYPTKAPSANATVKALNMLTSIAVPKVIHSDQGAAFTSSTFADWAKEKGIHLEYST
PYHPQSSGKVERKNSDIKRLLTKLLVGRPTKWYDLLSTVQLALNNAYSPILKHTPHQLLFGVDANIPFANQDTLDLTREE
ELSLLQEIRESLIQPPSPPASSRSWTPAVGLLVQERVARPASLRPRWHKPVKILEVLNPRTVVILDHLGNNRTVSVDNLK
LTANQNGSTNDSTTMAGLGQNAESQ
>ATGP1_gag#LTR/Gypsy 253-1629 [Arabidopsis]
MVRGAGVRGRGRGRGRGRGRVLEGTGESDGHSATVEQSVGSQPEFVEPGVRNGLGADIAGAAGVGAGGAGVGTGVHAVGA
EGPGVMGAAAGGAQVPEVGLAGLLRQLLERLPGVVPVEAPVAPRVAEVQQRAAVAEEVPSYLRMMEQLQRIGTGYFSGGT
SPEEADSWRSRVERNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSVTARRRQADMSWADFVAEFNAKYFPQEALDRMEARF
LELTQGERSVREYDREFNRLLVYAGRGMEDDQAQMRRFLRGLRPDLRVRCRVSQYATKAALVETAAEVEEDLQRQVVGVS
PAVQPKKTQQQVAPSKGGKPAQGQKRKWDHPSRAGQGGRAGCFSCGSLDHKVADCTQRAETRECYHCRERGHLRPNCPKL
QRMAVAVVQPAVQHGAQVQQGVQQLAHIAAAPQGYTTREIGGTSNRAITGMISETQTL
>ARET1#LTR/Gypsy 611-4758 via tfasty with CRM, 9 frameshifts and 6 stopcodons. [Adiantum capillus-veneris]
MHSVFPPPTVHSRYFGDGSVIQSMAGYALGSQPYMPGTVFGGMQGIMPNPMYGSIGMQQGFHCNQGQFGVPQGHFGMAGF
SGQQPDIAPLLQNVNGEDVPIMPITVPMLQTIPYDNLGALEKPKAYKEDGAAVKFSTFSGFEDKTKALTFLQQFDTAYAR
GNLTEALKVRKAATFLKDNALTWWTTLLMQGQAPATWVYFKQMFASAWLSNEFEADVMTDWYQLTSASCKSLLEYIRRFC
KALLSVTSYRFVPLTEQIEKYCCGLPKGLRDYCTKNRVATLTxLMEVANIGLALLKGEDSGFPSSDKGGQxKKNSAKKPF
VKTAPDASQGSEKATKDKDSDETSGAQAKKQKRKPFVLKSLExKKVLMAENKCFICEQPGHFSIICPQRKRPADSKDKED
QKGKKPKPTASLVPDMVDDRPNTDAIELCRAWGKVRDQTALIFFDPGAKANFISPELAMKLGVRAEEMGTQQRQGWLCPG
HSECVTPIIGKLRLYIQSYVDTEEFYIMLLEGCDALLGFPWMFRVDGVLDAYNKKITVQHRDKIHILDVKLKGESVPIVS
ASAITFVIKNHLSVYLIFARHVSESDQSNLSVLDKEGSTFLQNFSDCFFDSLPPQLPPERPEDHRIDLVPGCSPPNRPPY
RVSAAQQKEIIDQVEVQPSFSPFLLPVLLVQKKDGSWRMFIDYRLLNKITIKNRFPIPRIDDILNRLEGAAIFSMIDLQS
GYHQIHIRPEDVHKTAFRTAFGLYEFLVMPFGLKNAPATFNRMMDRIFRSHQxFVGTFFDDRIVYSKNEEEHRRHLTIVF
EECAITRLLVNPKKSEFFLEEIHFLGHIVSKDGVRMDPAKVEAIKTWPDLKTVHDVKSFLGLCSYYRRFIRNFAEIASPL
HALQKKRSHFRLTQKEILAFSLLKEKLTSDPVIVLPDLRKSFVVQCDACSVVLMQDGRVVAYESRILQGPVEDYASYEKE
LLAVIHALSSWKHYLLGADFVVQTDHQTLRYFLTQSKLSEKHMRWTIILSMFHFQIIHVEGKKNVVAGALSRRATILAMS
IPFHHELDDMTEQYTADEDFARIFEQLQEGQHHEHYLLRDGFMMMHGRLCVTRPLRHKVMEESHVPPYAGHRGIDATVKA
VETFFYWPTLRRDVDAFMxACIVCQKVKFDRQKAPGLLQPLPIPDKPWQSIAMDFIFDLPRTPAGNDGIWTIICRFSKQA
HFIPVRKKIKSDQMARLFMYNVLKYHGMPQSIISDRDPRMTSLFWRGLFENMGTTLKFSSSFHPQTDGQSKEANSIVLDL
LKCYVSDNKAKWExCLPMLEYAYNNTVHSSTGKCTFEIVEGGKKVPPILHTKDKIFEADRYVENMDEMYKKIKVALEKTR
AKQKKAADRHRCELLLSRGDWVL
>EFV_bel1#LTR/Foamy gi|9634981|ref|NP_054718.1| ORF1/Tas/Bel1 [Equine foamy virus]
MASSSWTPSPSPRGQRRITRKELWEVDLSRGDEFFPSSSDCKDTQLRLMLLSVYSLRQTKNLLTHFEIESRTLDNEYGYL
IYTCNYCAKRQIDCNRWHYNHDFKLFEAERNDKGDQRSVSQCWRHLRYRCPNLPLDVRSSLQLTKWDDLLCKRIASYQMQ
GSGGKRRATERTISPGHQPIPNQQPEPQSSLSTDSTLLQDPGEGQSSRDHLDEEPGTGLPNMDWTVEWDGEISDSALQEF
DFDLSLFGQ
>MERVL_gag#LTR/ERVL 45-1790 [Mus mouse genus]
MNLLKYWNWLVDPPALSTIETSPDSLPPGSSENFEDPWLKLYSELKEANDLDFLNELGDSVHKAFYKMGKKSENDFTGWL
LLVSVEKMMNERKELCDKIERLQTQVNDLKVAKCVLEENLLSCSNRAQVAENQTETLIVRLAELQRKFKSQPQSVSTVKV
RALIGKEWDPTTWDGDVWEDHVEAENFESSDSQGFAPPEEVVPSAPPLEIMPSPHEEINFAESDKPAMTFTTDVSQGPPI
VSSRPVTRLKAKQAPRGEVESVVHEEIRYTTKELNEFANSFKQKPGEYVWEWILRVWDKGGRNIKLEQAEFIDMGPLSRD
SRFNTEARIVKKGVKSLFEWLAEVFIKRWPTGNDLEMPDIPWLSVDEGILRLREIAMLEWIYCVKHNCPQWEGPEDMPFT
SSIRRKLVRGAPAHLKGFVLSLFLVPDLSIGDASAQLDELNSLGLVGFRGNKGQVAALNHRRQGDSSYYNGQRRQKNVYN
NIPSNGQHRRGEIYNGMARLDLWYWLTNHGVSRNEIHRKPTAYLFDLYKQKNSQTNERKATLDCGKQPNERKATLDRGKQ
QSRPVNQFPDLRQFADPEPLE
>ERVL-B4_gag#LTR/ERVL 45-1784 (HERVL gag close) [Eutheria]
MSFLNWFWGFWNWLSNLIRFKDANDSISSSKESTDSPWRDLAIEIRKISPLDTPNQPLIRSKDLGDCVYDTFKHFWQTNE
YNEIGWLLLMSLDKVGKEKDELRDSNSQLKRRINDLKASMCALKETLISCSRRAEIAENQTQNLILRLAELQCKLNSQPR
RVSTVKVRALIGKEWDPXSWNGDVWEDPDEAGDIEPLNSDESSLPVEEASPPPVEVASPPPVVAASPPPSEGINPALPEE
TVMASPEAVAMQDNADSPQDPPPPPLFASRPITRLKSQQAPKGEVQSVTHEEVRYTPKELLEFSNLYRQKSGEHVWEWIL
RVWDNGGRNIKLDQAEFIDMGSLSRDSAFNVAAQGVRKGSNSLFGWLAETWTKRWPTVSELEMPDLPWFNVEEGIQRLRE
IGMLEWICHLRPTHPHWEGPEDIPFTXTVRNKFVRGAPASLKSSVIALLCRPDLTVGTAVTELGNLNAMGVIGSRGGRGQ
VAALNHQRQGGRGYRNGQQSQSSNQNSLTRADLWHWLVDHGVPRSEIDRKPTKFLLDLYKQKSSRSSEQKSNLNHKNRES
RPLNQFPDLSQFTDPEPLE
>MTE_746-1348#LTR/ERVL [Rodentia]
EVFSQXQLRHTEATAAVVQGGQATSRAGSRTWQRRPHGAGFAGMXNARVXGSWRLAPRFQKAAEARQCVAGSXSLQGGPE
RPLHEAVKVKPKLQWRPQDVGDARTMGHLPRKAAGTEWSQPKREATCAAGGRAGGAGLPKPFGAQMIPSRAPDAGHGAAG
FGVCPAGFRSCFGPVFPCYAPIPPFWNGNVYSVPLYVGSM
>BFV_bel1#LTR/Foamy gi|9629648|ref|NP_044931.1| Borf-1 [Bovine foamy virus]
MASGGTPEKARVACRRVDLSSFLAQPDDYPTAADSKEDLILKLACTTLFSEKHAHEIYENYKLHLKRDELRGGKEWVIIY
SCKHCYTVFMDNSRLTLGPSGLFKVIRNKKGPYMLCQMLTRHLTDRCDPRTKPFQSSSSLHPNLVTENPRGTGGGTPGQH
TLGGDQDMRVDTSGIKPLSSLCQCARDDPGRSDNPLEMAEPVQPWWTDSSLEPEITTWVLGDPDATARFWTGDDKGPQEW
DFDDDLLGP
>ORR1D_gag#LTR/ERVL 45-1023 [Rodentia]
MLXFGGMWKTLGLWTRKAVECCKQGLMGHPSRSLEDSSAESNVDCGGPAQEVSEGNNISNWARDHSCDILAKNVAAFCPC
PKNLPEAKLKSXGLISLAEEISRQPNIDSVAWLLVITLMQVYNEKEQVGQKEIQNVQFEEKKSTRKFNVGAKACAERDEI
KERPDPKWNKGXGALRARPHPAKLPTCERRRPKEFSAPKKQQQXESXANVIQGGQAPPQAGSQTWQRRPRGXGFRVMKDA
XVKGLWNLPPWLRRAAEARRVAGESLHGGPERPLREAVKVKPGLRWRPKMLEMPEPWDICQGELXTGSGTSPRERSVLQS
AKLEG
>ATGP5A_pol#LTR/Gypsy 1763-5002  [Arabidopsis thaliana]
MTPHEVYLDQLSMKMRKKQTVKPSNLMINESKQKGSGFQSSKLLFVFKETLMSLTNPEQAIPSKIKFLLQDYTDVFPEEN
PVGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVTELMERGHIRESMSPCAVPVLLVPKKDGSWRMCVDCRA
INNITVKYRHPIPRLDDMLDELHGSSIFSKVDLKSGYHQIRMKEGDEWKTAFKTIQGLYEWLVMPFGLTNAPSTFMRLMN
HVLRAFIGRFVIVYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNLVFLGFVVSTDGVKVDEEKVKAI
REWPSPKSVGEVRSFHGLAGFYRRFVKDFSTLAAPLTEVIKKNVGFKWEQAQEDAFQALKEKLTHAPVLSLPDFLKTFEI
ECDASGVGIGVVLMQDKKPIAYFSEKLGGATLNYPTYDKELYALVRALQTGQHYLWPKEFVIHTDHESLKHLKGQQKLNK
RHARWVEFIETFPYVIKYKKGKDNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDG
FLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPL
PIPSHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFREVVRLHGMPKTIVSDRDTKFL
SYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYG
FNPTTPLDLMPLPLSERVSLDGKKKAELVQQIHEQAKKNIEEKTKQYAKHANKSRKEVIFNEGDLVWIHLRKERFPKERK
SKLMSRIDGPFKVLKRINNNAYSLDLQGKYNVSNSFNVADLFPFIADNTDLRSNPFQLGEDDVIMTSLDHGADEIMTSLD
HGADEIMTSLDHGDDVIMTSLDHGAKEQFEGGKVINHSIKHAVEDLRELESNDSMDYSTQHEDELLGATKKEAMHVLNGP
MTRSKTRLLNQDITTLLQHIEGSLKQDACQTTLVVIQAV
>BLOOD_pol#LTR/Gypsy 2673-6335 [Drosophila fruit fly genus]
RTIGKQPDPLKRSTVKVFKVNLNLSIFIKTKNHETNTVLTLLIDTGAEISLLKAKAKEYNNINFSNISNITGIGQGTIQS
IGTVDLDIRIQDVLVPHEFHVVPENFPIPCDGIIGIDFIKKYNCVLEFQNNKDWFTIRPNNFSRQISVPITHNLDSNTLL
LPARCEVIRQVKLLTNEKTVVVPNQELQPGIIVASTIADSKNALIRIINTNNKDAIIDSAKIKCESMKDYDIFTTPVEKE
NRTEEILKQLRFPKQFNNELTKLCTEFSDIFGLETEPISANNFYKQKLRLGEKTPVYIKNYRMADSQKPEIARQVKKLID
DGIVEPSMSEYNSPLLLVPKKPLPNSTEKRWRLAVDYRQINKKLLSDKFPLPRIEDILDQLGRAKYFSCLDLMSGFHQIE
LEKRYRDITSFSTANGSYRFTRLPYGLKVAPNSFQRMMTLAFSGLEPSQAFLYMDDLVVIGCSEKHMLKNLTNVFELCRR
HNLKLHPGKCSFFMKEVTYLGHKCTDKGILPDDTKYEVIEKYPIPTDADSARRFVAFCNYYRRFIKNFSDHSRHLTRLCK
KNVQFEWTAECNDAFEYLKTELMKPTLLQYPDFGKEFCITTDASKQACGAVLTQDHNGQQLPVAYASRMFTQGESNKSTT
EQELTAIHWAINHFRPYIYGKHFMVKSDHRPLSYLFSMKNPSSKLTRMRLDLEEYDFTVEYLKGKDNHIADALSRITIKD
LKTINREILKVTTRSKAKQENSCKDEAIVKIQEEKEQTIEKPKVYEVVNNNDTKKYVLIKIDKHKCLLKRGKTIVSRFDV
DDLYSNETFDLNQFFQRLISKAGMHKITKMRISPSEQMFQFVSLNEFKIKGNRVLEKVELAILQKVIIIDKNDEAQIKEI
LTKFHDDPIEGGHTGISRTQSKIKRFYYWPQMTKTISKYVKTCLKCQQAKITTHTKTPLTLMPTPATAFDTVLIDTIGPL
PKSEDGNEYAVTIICDLTKFLVTIPTPNKSAKTVAKAIFELFVLKYGPMKTFITDQGTEYKNSLMNELCKYMHIENLTSS
AHHHQTLGTIERSHRTFNEYIRSYISVNKSDWDIWLPYFTYCFNTTPSIVHDYCPYELVFGRLPRQFKDFSKINKIDPIY
NLDDYSKELKCRLELSYNRARRMLEKAKADRKLRYDRNTNNFELKIGDKVLLRKETGHKLDKRYEGPYDVVDIGINDNIT
IKTGSKKQQIVHKDRLKKHK
>BAGY1_HV_orf1#LTR/Gypsy 589-1119 matches Latidu2_TM ORF1 product [Hordeum vulgare]
SQYICTVRVFPDYPAAEEPIHWSYGLGVSVDMEVQDAAYSMLIIMRARHALLENSEFCYVPASQPGEEGYLSGVYFDSSM
EDPLLQSTAEMLENGDRDARALRMELYATRARLWTALTQLAPVVQTGYGDMEMLNPVRNHLSAHVDWPAIGGVTPLRGPL
LPPVRGPRAHPFPYGS
>CENTA_gag#LTR/Gypsy 831-1769 [Zea mays]
MAGDMDIFDPTERYIGGIIQHLPLYAGKFDPHAYIDWELKLDKEFDKHDLSQKQKIYIASNLLTEHALMEWKYICRHNKV
PQSWEDFKLHFRDAFIPAYYADHLLSKLDTLKQGARTVKDYYYDFKIFTMFARLDECMEDVMTRFMKGLNSEIQTIVMHE
AYKHISHLFLLACKAENEILLYNYTSTEHVSHNSSFASSLHADQEHKIMKPAVVFPSSQEELIADTCDSEDLWDNDSHVL
RQQLVNEHVTSIIEPNILAKKEHVICIANETEEINLLSSLNTWGYIEFDDLFELGNLENILFARFNYTMSFS
>Chouto_gag#LTR/Gypsy 559-1893 [Drosophila melanogaster]
MSETESEELVDQLSKLALTDEAERIRKKTYNMDPQQLQAVINVAVSAALNVQREDFEKKLEEVKNKFTASTISAPEIAVY
VPIAVTGNVSCDEGLDAVKSLPEFDGSQGKYVSWRQAAAAAYELFREYSGSSRHYQAVLIIRNKIRGSADSVLSSFNTVL
NFDAIISRLDFTYSDKRPLHLLEQELTTLRQGQMSITQFYEEVEKKLSLLTNKTTMTYETDHARYMNDKHRSDALRVFIS
GLKRNLTDVLFAAQPADLPSALAMAQEIEANHERHAFATQYARSIEEKYLRQAQNRQLQRTTESNHEPTFKKWVKNPFFT
RDNGGRPVVDNRPLEKMDVDPTLSRFRQLTNFQRPQGFSMPQALDAQQQSAQNRPTSSQRMSDFKRQRVNHLFEEDRNDQ
KEDHYNQIANDAVDDIDGEEETDYESDSVHFLGVHPCFRSSSEQ
>CER3_CE_pol#LTR/Gypsy 3025-6127 via tfasty with QUASIMODO, 2 frameshifts and 3 stopcodons.  [Caenorhabditis elegans]
MTESCVVFDSVAHCSSPKINTVENAVSQNSFSIDLSSVNISSNERAQLQALIDEYHDVFSKNAYDLGSSKTDPVHIYTTT
EVPVRSRAYRTPVRYQAELEKHINSLIQSGRIVESNTPWTSPIVLIKKKNGSLRVCLDFRKLNEVTVPDNYPLPRIDSII
EQIGGSKYFTSLDMANGYLQLRLDAESSDKCGFITENKVYAYTHLPFGLRSAASYFQRDLKQVLxGLEKEVTVYIDDVLI
FSKTFEEHLNSLRKVLERFRKFNLKVSPNKCEFFKQSITFLGHEINADNYKPNRINVDAIVNLPTPRNVGDVRRFIGMSG
FFRKFLPNFSEIAEPLTRFTRKGHKFVWKAEQQKAVDTLKQALISKPILVFPDYDKEFHIFTDASAVAQGAVLMQQMEDS
TKDYAAIAYTSRTLSDTESRWPAIQTELGAIIFALRQFRPYIGQSRTTIHSDHRPPMYLLGKSKVNDNLARWLIELAQYD
TRIVHIDGKKNTVADCLSRAKDEVAPLDGVEMEDIISFPVCMPIHMSNIQASMAFTPVGTLVWICSRSKRRIRSxNASRY
FRRQQRRSHIVPSTWAGVLEHIKLTESGLLAVATPGSRPKTVIPQQLKSLILKSFHESLLGGGHFGYRKTLHKIKRNYYW
PNMRSDVLKWTLQCKICQQKRNPHPSTRELQKIVITTKVFEKVGVDLTGPLRMTASGNKxYMVCWFTKFVISVPLPNAST
ETVADAMMKELLLKFGTPSQLVSDRASTFTSEAFRAFCRKLEIQQHLAIPYHSKGNGATERTFRTFHNMVSKHVNKTHTD
WDQILPYMTFVYNTTVHDTTGETPFFLIFGRDPVFAIDKIMHPSPPKEGEEVDIPAWKEHLITTLRLARKEAAERSLKEQ
EARQKVANVGAKGSKIVVGDRVFFQNHKSKANLSRKMVLPWIGEFEVISIDHPKAVIKDLEHPSKPERTVHLNQIKKILE
REDPGAALKDSDDSISEVEAIKEELATAQPEINQAPTHQIEDNIVEDICIPHAQEVETRKNPSRQRRRPKRFED
>ATHILA-6_SBi_p2#LTR/Gypsy 3308-3886 Similarities to GypsO_p2 and Atlantys-2_OS_p2[Sorghum bicolor]
MSSYALSLINAPKTIANLDIAPYQESSSKEVHVEKRKPLALLPANHKAPTNSAANIPATARSSTSNIGLKRKAPSGDRQG
NHAGSKMGGKAKKTESSSTLPRIRRHLPQPSIKRRAGQYESSDEEDDPNIIAELLAKQASLRAELRVLEDDLEEKNTEIR
NLSDDVNRFRFKFNTKLRKVAEALGVGRLVEDL
>Athila2_env#LTR/Gypsy 3875-5791 via tfasty with Athila6A, 3 frameshifts and 1 stopcodon.  [Arabidopsis]
MSNYSGESSSDPDYNVDEAESWSARPREQHVYQSFRDEFECSATRRNQRSAEIARGKRAMSSRYELIDEDIGTEYEQESW
RKETKLRNKPDEVTVEEYIRFFKMNDFWGTRYSCYETLAQLGLLEDVQHLFEKCHLETLMSYPYAAYxEETIEFLSTLQV
EMYEGLTDFELDTMGLGFLTFLVDEQRYQLAIKKLEELFGFPSGKGTKPRFDREELKDLWATIGNNLPLNLARSKSNQIQ
SPVICYFQRSVANVFYSRESTSTVSNTDMEMIDSALTGILRRTKGKNVLRGDLNNAPPEMLLLIHLCGYRKWALMNGKKK
VRGALCVGGVVMPILEACGVPLKEPGLALRMMDLDNLRRCEFLEFDMAGDFHRYRFEHSSIRIANILLPCIDATRILEGR
NIDFKPALEDLYFEGSPPTDDVSHTEGAPTEDVDETDDIDEAEFNTSMYHFSEHIPPARESKSLSEAHRKNSKLQKWCKK
QDKLLVKCLRAIKFLKDKISCSSSTTAIPQGQLSQDMPSRRYDAPEPSRRRPEPREQEIPHVPARHSSFEPRESGRKRRT
TLTRSSRRSRRLLQSRSLRDRGADRSRRREVEYPQSGAGCHRADEVEYPPAGADTEQGGSSMAWEQSHAAIDDQLRSFFD
>ATGP7I#LTR/Gypsy 286-4556 via tfasty with ATGP5I, 5 frameshifts and 1 stopcodon.  [Arabidopsis]
MSDKDKEEHSNAQNNKLLMEAITATLTATLTANMAKMMDERFVAARSNQERENRTMRNNSDREATLSYYSQSSTRTSHRR
QRRGQEERHPPRDNLANLKLRIPPFRGTNNLDDYLEWEKKIELVFVCQEYTEANKVKVAATEFYDYALSWWDQVVTTKRR
LGDDPIKTWNQLKNIMKRRFVPSHYHRELHQRLRNLVQGNRTVEEYFKEMETLMLRADVQEECEATMSRLFMGGLNRDII
DRLEVIHYENLEELFYKAVMFEKQIKRRSAKPSYNSSKPSYQREEKSGFQKEYTPFVKPKVEEISSKGKEKEVTRTRDLK
YFKCHGLGHYASECSNKRIMIIRDSGEVESEDEKPEESDVEEAPKGALLVTMRVLSVLNKAEEQAQRENLFHTRCLIKGK
VCSLIIDGGSCTNVASETMVQKLGLEEFPHPRPYKLQWLKESGEMDVTRQFQVPLAIGKYEDEILCDILPLEASHVLLGR
PWQSDRKVIHDGFSNRHSFEFRGRKTVLAPMAPHEVYLDQLSMKKKGSQAVQSKTFVSKPKGSTKPNLLFVFKENLLNIT
ALEPALPSSIKFLLQDYQDVFPEENPEGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVQTKELEKQVNELMERGHIGESM
SPCDVPVLLVPKKDESWRMCVDCRAINNITVKYRHLIPRLDDMLDELHGSNIFSKVDLKSGYHQIRMKEGDEWKTAFKTK
QGLYEWxVMPFGLTNAPSTFMRLMNHVLRAYIGHFIVVYFDDILVYSKSLGEHVEHLKMVLEVLRKEKLYANLKKCTFGT
DNLVFLGFVVSTDGVKVDEEKVKAIREWSSPKSVGEVRSFHGLVGFYRRFVRDFSTLAAPLTEVIKKNVGFKWEQAQEDA
FQALKEKFTHAPVLSLPDFFKTFEIECDASGVGIGAVLMQNKKPIAYFSEKLGGGTLNYPTYDKELYALVRALQTWQHYL
WPKEFVIHTDHESLMHLKGQQKLNKRHARWVEFIETFPYVIKYKKGKDNVVVDALSRRYVLLSSLDAKLLGFEHIKSLYA
NDSDFNKIYSSCEKFVFGKYYRHEGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTLKVMQDHFHWPHMKDVER
MCERCTTCKQAKAKSQPHGLYTPLPIPLRSWNDISMDFVIGLLRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANL
FFMEVVRLHEMPKTIVSDRDTKFLSYFWKTFWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLP
HVEFAYNHSVHSATKFSPFQIVYGFNPITPLDLMPLPLSERVSMDGKKKADLVQQIHEQARKNIEEKTKQYAKHANKSRK
ELIFNEGDLVWIHLRKERFPKERKSKLMPQMDGPFKVLKRINDNAYSLDLQDKTDLRLNPFQVG
>Athila4A_gag#LTR/Gypsy 144-1601 Non-autonomous [Arabidopsis]
MNESKIAGIMAKLNAVHNQLVEDVDYVGSRGFPNQRFDHQQGYRGSYGNGPTSYTQNSQFQQPLQNSNSFSFTRNYDLAS
YQAPPPPAPRSKIESLLEQILEGQQRILERPIPRWNESSLTTSWHAASMESEYELVKIEESDDFEVAEAVSTDTNPWCRS
TPSHIYETSGCDEAKSTRLDIDLQNRSTHIDSVDRHHLGVDRHQYQPEEVSTFDRAESTEIDRAGSIPDSSVDRHSPSVD
RHWTQTAPISLDFPPVAELVYTPEIPCPLPQQYMQEIQEERCKAPQHQEDKRKTIIVSEQISELNCQHAKESRVVARVSI
DTTTRVDRHTSLVEAKSSPIATFQAGITAISPGTTVTSPTAPLILHPPPKRLRYSSPPPKPPDFINKTLKFSKTVLRLSK
PRVSRRALVRSFDDCARKRSIPPIPESHPADAPLFLDRPHALTAYTPAWMMRGLSPRYLLPPSDPPDPHIPSKSSY
>ATHILA-2_SBi#LTR/Gypsy 154-2918 via tfasty with SZ-38, 1 frameshift and 1 stopcodon. [Sorghum bicolor]
MNRFDLPDNFVDNPETLIRKTKAKLRRNQSTSSTSQLANPPESEDQPTQSLTPEIDVMADKSLREFSAPTTANIRTGPAA
DINGSFELKPALINMVQASQFCGKAHEDASAHLQHFLEICSTFTIKDVPRDAILLRLFPFSLLGKAKQWFYANKEKNTTW
ALCSTNFLAKFFPTGKTNALRGKISSFQQQHDETVPEAWERFQDYILECPHHGMENWLLMQTFYHGLSNSTRETMDAAAG
GAFLSLTISQATALVEKMASNQGWSEERTQTRKRGGGMHQLKEVDMLAAKMDLLMKRLDERTVEKKEVMHIHDSGMTCEE
CGETGHTGTNCPELREDVNYINNNNNYYYRPQQNQGWNQQQRPNYxVTTQVITKVIIPYNNTNQPPLRELVLNQGKLMDS
LSKKLASNDKTLESINIRMESFSNAIKNQLSFNKMLESQLQQLAPFAAANDQGKIPGQPGELETANLVDIFNAGSYWSDP
PRGTWLDSSLPTKKGDPGRPVIPISIGSANFDEAICDFGASINIMPKVIYEKLFNYPLSRTTMCLQLADQSLCYPMGIME
EICVRVGNSYVPADFTVVNTGTDERSPIILGRPFLNTAGAIIYASNAKITFNIKGNREAFSFKNKTLSIPAQKETVGGRN
KSNTQNKAKTKNKGKQKAQKTETAQMVTAIRMEYDHLLKSPHLIKKDDPGVPTILCSINRCYFYNTVCDTGSGVNIMAKV
TYEFLYGTMPMDPTYAQLQLADQSFRFVDGIAKNVPVQIEDHYVPTDFLVVDMGEECDPPIILGRPFLNTTKAIIYIGTG
EVHFQFPSEKVRLHFNSNYIIEEDPKKNRSRRRRRTRHQKKKNVVDGWADYEGEVSRFEDRYPDEDTVKEEVPAEEEIVI
PDTLSSKSPSPTGQVWKPKVNSELNPAQDTAPVAPSDAPLDQ
>ATHILA-1_SBi#LTR/Gypsy 161-2806 [Sorghum bicolor]
MNRRHLPGNFVDNPEALFKKTRAKLKKRSSTLQQEASSNQEDHRNLSSEFEAMANKSIREFSAPTTDNIRTGPAAEIDGN
FELKPGLINMVQSNQFCGKAHEDASAHLQHFLEICNTFTIXGVSKDAILLRLFPFSLLGRAKQWFYATKEKNTTWALCST
NFLAKFFPMGKTNALRGKITSFQQQNDESVPEAWERFQDYILECPHHGMESWLLMQTFYHGLGNSARETMDAAAGGAFLS
LTIPQATALVEKMASNQSWNEERTQTRKRGGGMHQLKEVDMLSAKLDLLMKKLDDRAGDKKEVMHIYDSHMTCEECGDTG
HSGNHCPEMLEDVNYINNNNNYYYNRPQQNQGWNQQRPNYSGNYQGNNSYNNNNNFPPLRELVSNQGKLMDNLSKKLASN
DKMLENINNRMDNFSTAIKNQISFNKMIESQLNQIAAAVPTTNPGIPSQPEGLESANLVDMFDAGNWSNPVTEFSTDLLP
VKRGDPGRPVIPISIGMVDVPEALCDFGSSVNIIPRVLYEKFFTYPLLETTMCLQFADQTITFPKGIXKNLCVRVGTLYA
PADFVVVETGNDERAPIILGRPFLNTTGAIIYASAAKISFYVKGRKETFFFKNKTTQIPDQSRRESRKRTNRRNRNKQVW
TESAKMVTVVHGGQDHQLKSPFLTKKDDPGMPSIYCSINGYNFYKTTCDTGSGVNIMAAVTYRLLFGTMPLRPTYIQLQM
ADQTFREVKGIVTDVPVKIDDHFVYTDFQVVDMGEDEYDPPIILGRPFLSTVKAIIYIGTGEVHMHFPSEKVRRYFTDPN
YIVEESKQVRKRRNRNQRRQIIKDGWADYEGEVVRSEDVEFKQNYPEETEAPSQVWKMKITIHEEEAPPEVPTTPPNEPQ
DD
>MERVK26_pol#LTR/ERVK 2581-5277 [Muridae]
KPSSKSPPILGATVRFSTPCLDWLSDEAIWVPQWPLSREKLRALTQLVEEQLLLQHLRPSRSPWNTPVFAIKKSSGGWRL
LQDLRAINKTMRVWGSPQRGLPHISAIPANVPLLAIDIKDCFFSIPLHPRDCERFAFSVPPINNSGPASRYEWTVLPQGM
ANSPTICQEAVATALKPYLDKGLNIYHYMDDILVWGDSSTSPSQLKDQLIPSLSALGFKIAPHKIQLIPPIAFLGTEISL
TSIRPLKPTLSFPQKLTLASLQSFLGNLNWLRPWLPLPTSTLQPLFNLLKGDKSPSSPRTLSPEAVQALNSVNAALKDMA
LARYDPTKPIQLLIFNSSPTLVGALYQPQGVLEWLHTPMGGAPRILNEVDALASMIKNGRDRALQTLGKEPDILVIPFSL
SDIQWLIKNHSRFAISLIGFPGQIDNHYPDEKWASALPLLRWLPPKLFSKGPIAGAPSIFTDGGKRGAAAVIYYFPEDEP
PILRFKELPSHSPQYKELYAIYLALKEVKGPLNLFSDSVYAVNLLPWLSRSFIKLDANPLSPLLIQVSTLLQERDSPIYI
QHVRSHSPLPGPISEGNALADQTASTGTFMASTEQADQFHSRTHTNIKGLHARFPHIPLAQLQRIIKTCSSCASLITTPA
LQMMGTNPRGLKSNALWQIDVTHIPQFGRQKYVFVTVDTYSHFIWATAQTGENSKRLIHHMLSTFAIMGIPQQIKTDNGP
AFTSSQFKTFCTHWEIAHHTGIPHNPQGQGIIERTHQTLKAQLLKQKATTYPPNVQLMMALTTLNIFNIYKNSKHPPISL
HWHTPKLAPPILVRWRDPLDGIWKGPDPLLTTGRGFACVFPQDQPKPIWVPARNVRHHPTDQEDGPPLTGRSRTEEGEEE
AEETPHPEGQXDLLEGHP
>MacERVK2_gag#LTR/ERVK 115-1899  [Cercopithecidae]
MGNSSSLASEYLRLLQGLLLSIGVDTKERTLRKLFAHVEQHCYWFQYQTKVQLNKRDWQQVVKTLRQAHQRGDVMSAPLW
ALCASITQALELLETDSEKGEGGDEESLKSPIAISPPLDNPVTDGEGPLHNDVSQERESEIQKELQPVVQLLQQILQLQL
SPPHPSPPPTPVFTFPVAHPPPSAPKAEEEDSFPPPPPPVEMLPRSGTVFTVPASTAKAVIEVLDSQEDEDPLQLFPITR
QPFGPNDQFPQGGVNVQYNVLQFKFLKEMKAAVANYGPQSPFVMGLLDSFSSENLFLPLDWETLGKAVLDRSQWLQLRSW
WLEDAKEQARRNAARNPPGPTEEQLTGTGQFATVAAQSGLDDVALSQVKGLFLKAWCKVEPSGKTALSFVKILQGANEPY
PDFVARLQDAVMKTVGNGAAGKILITTLAFENANQECQRLLRPLKAAGNLQIEDFIRACAGVGGAAYNAQLFAGALSKAL
MGKKGVCFQCGKTGHFKKECRKLSNKNDSPKIGSKRLPTEPCRRCGKGRHWTNQCHSKVDKYGNPLTSGSGNLQRGPSAW
GPSNNTSPLHLQFPISSGVQHQQANQSMLTPNFH
>PlatERVK2b_pol#LTR/ERVK 2377-5133 [Ornithorhynchus]
KFWIGAIGVRRLETPALVWKSSEPVWVDQWPLTLEKLQALTEIVEEQLKAGHLEISFSPNNSPVFVIKKKNTGKYRMLMD
LRKINALIRPMGPLQAGLPSPNMIPKGQPIRILDIRDCFYSIPLHEQDRPRFAFTVPSVNFAAPAKRYQWKVLPQGMVNS
PTLCQWYVGKILEDIRSQYPDATMLHYMDDILLSHPSPGRLHSLTVAVVEHLKHYGLVVAPEKVQDTEPFSYLGFSLLGD
RVTQQAPQIEFDRYTTLNDIQRLVGQIQWLRARLPVPSGLMEPLYDLLKGNPNLRSPREWTTAAKDAVQTILQLATRGST
DRVDPAARLEVTVFRDRGLFAAIHQGNRVLEWSYSGRTSKVLEREEVILGRFCLTLIRRVRVLAGSTPIIYLGISQGEVD
ALAQEDLTWATITQTAQVEERSTLLVGPLLRRAWLSRARVVQNEPVEGDNIFTDATKDKRAAVYNQTSGXLTVLSTPHES
TQRNELYAINWALEKYSQPINVISDSLYAVSLVNRLETSILFDRRSEIGEQLCDLQRRLLARTSPIYVMHVRSHTDGRGP
VFEGNRVVDASLYQVLAGGSFPESARKAHALFHLPAVSLRRLYGLTKAEARGIVRRCTRCLPFLPRPPGQSGVNPRGLVP
NDIWQMDVTHWGRDCVHVSVDTHSGFLMATKQPGEAARHVQSHLYHCFASSGVPREIKTDNGPAYTSQTMAKFFTTFGIK
HVVGIAYNPNGQAIVERANRTLRTLLTKQGVGRRVGQRELDTAVYTHNFLGVDRVSGLTPAMRHLCVADKSGLPSRWTQT
DDVAQQAMWKDAQGGWQGPHRVLIRGRGYACVSTGGGPVWVPSRNLRVLEGTTDDADGSDPASATSSAASAGPQDATSAP
SGGGALDATTSAAALAGRRRRSSARPGRRPPSHPDGPG
>RNERVK8_gag#LTR/ERVK 389-2171 via tfasty with RNERV14_gag, 3 frameshifts and 1 stopcodon.  [Rattus]
MGSSHSTPLLSALQELLGQRKLKIEKKILLSFLDECDRCAPWFIVSGSLTLRAWDKLGKDLDREXTEGKLKPGTKPLWXM
VRACLEDKRCEEAVRTGQRILAEQQESMSEGEKVSKEEKKRKGGKExKERQKRQGEVQKKAGNNQDQETXKIYPSLKALT
LEMSSDSELSDSDLADLEEEXAHYEKEXYHPDWPHAXAVRKQAKELDKKAIIPTAPPAPPYNFQXKXMVKPAGGTSFCPE
VWKELGLSFPVFLDANGQRHHEPVDFKTIKQLAESVKTYGVSAAFVMAQIEALGRYCLTPGDWGSLARACLSPGQYLDWK
SXLYEXANAQAAINLASGADPQRHWDADMLLGIGRFALDQTGYPDQVYSQINXIAIKAWKALPNRGAVSGNLTKVLQGPX
EPFSDFVARMVESATKIFGDPDTAMPLIKQLVYEQCTKECRTAITPYKHKGLEVWMKVCREIGGPLTNVGLXAAMVQLRR
KXTTDTCFKCGRKGHYRXQCPEXNVGNRVVTGPPQPRLCPRCKKGNHWASECRSVKDLDGRPLATGYGGARPKNGQRGPR
PQGPQIYGALQNDRQGQDKQRPWPSLHHPKDRGEPR
>RNERV14_pol#LTR/ERVK 2567-5236 [Rattus]
GKTDYTPSLGQEWPGKFILRATAKQPPSIRPLPITWNSNKPVWVRQWSLSKEKLEAAHLLVQEQLEAGHIVPSTSPWNTP
IFVIKKKSGKWRLLQDLREVNKTMEPMGATQPGLPSPVAIPKSWFMLIIDLKDCFFTIPLHPKDCKRFAFSVPSTNFKEP
AHRFHWVVLPQGMANSPTLCQIYVAAALRPLRDRCPQLYIVHYMDDILLSGPNKTEVLEAFADLREDLQSAGLVLAPEKI
QQNFPYQYLGHQLLQKGIKPLXLQIRLDXLKTLNDFQKLLGDINWLRPSLHLGTGQLKPLFEILKGEPSPTSLRTLTPEG
RKCLELVQDALEKAHLNYIDYNKPFSLIIFASSHSPTGLFWQDGPLLWVHSQVSPAKVVMAYYQAVVQLLFKAQKMSIQV
FGVEPKFIILPYDQEQVNNLIRTFDDWSIFSCSTTSQFDNHYPENKICQFFKLHPVIFPSIVKNQPLSKARLVFTDGSSK
GYAVVLSEGKVEKMMLDSTSAQLAELKALPLALSLFPEEPCNIYTDSVYVSNIILPLETAAYVAPVSPTCSCLLQVQALL
WQRREPIYVGHIRGHSGSXGPLAEGNAAADLYTRPQFVAVALDSYDLALQLHRKFHINSQSLKHXTGCTKEQAVQIVTQC
PSCAPLIPSPSLGVNPRGLMPNDIWQMDVTHVPSFGKLKYVHVSIDTYSGLIFASAHSGEKIKDVKSHCLQAFAFMNVPR
QIKTDNGPAYTSKTFQQFCAYFDVLHKTGIPYNSQGQAIVERAHLTIKNQLGRXKEGEYTAPPTKLSTILYILNFLIVDK
AGLSAADRHWRKDRAHNGLVKWKDLASGAWKGPDPILVRVRGSACIFPKDAEAPVWVPERCVRPVDDSPPRDILKLHEES
PDPDASGNA
>MacERVK2_env#LTR/ERVK 5163-6921 [Cercopithecidae]
NPVEKKTGFSMHFFLCWMCLGGGLISLSEALYEYWTYIPFPPLYQGVAWGEAEIKVFTNDTTWMPSPYIDKDNIERETGI
INNTYQFGVEGLPICMGNSPHCLRKSHEAWAVRYNHSHVAANTVIIVTRSFQYNHTVYSNETIPSSLPFCPIPEVSPNIE
VLEWQQCRGTKPRILLEYNGMQITDWSVHGDFQTKFSHIPLKWHRVNKSIAANGNETLVWREGGLSPPMPHLRHSLQVQS
HLWKLLAAGDAISTFVGNMSLNLSNPNNSFHIQLYRNTSRYIIACVRKPYLLLAGNLTWDNDTGIVNCTDTCTFLSCLNH
SWWHNFTGDIYILRARKEIWLPVNLTRPWGASPLETYIWTSLQRTRRALGLIIASVMSLVAIASTAAVAGLALHQSIQNA
EFVQQWHEQSHRLWLQQRNIDSQLAERLDNMEQALTWLGDQLTVLSTRITLQCDWNSTQFCVTPVPFNISQNWTEIRKLL
VGHKNISLDIQELTQNISEAFRQQLHVLSGTATLQELGQRLAAFNPWTQMKTWISTISGSILLWALGLGLLLLVIRCSLR
RLQKQKKTQEQIWATFLGLRQNKKGE
>HERVK11D_gag#LTR/ERVK 162-2228 [Primates]
MGQSQSKHQAYLSFIKLLLKQGGIKADSNNLILLFQTIEKYCPWFPDKGSMDLLDWDRVGATLRQLMRDGVLLPISVWTD
WALIRVALLPFQSGDPLQLPQVNADGEPLPLPRVADPPTSPPSDDEEEFDLSLFSPQEEEPGDDPLPPPPILEPVYVNSS
STKLLPPLPEEDVWHSSEWPVSRSSRPFGPLPSSKPTVSFDAPGPLLSEAWNPASPQSTSRCPHSPSLFSSAPARPVRTS
IQEAMCRAMASCGLDVWQLPIAIASKCEGAGGWGKGTAKGRRYYESFSVQLLKDFKAACDQYGPNSPYVKTVLHSLTTEK
QLVPIDWNLLAHASLTPSRFLQFKILWSEEAMIQTSINFENGTEVSYAMLMGTSDLWNILARQLEYCQRILTQVTQVCLR
AWERIQDAGKAPLSFSAIKQGPSEPYPDFTAQLTDAAEKAISDTRARDVVIRLMALENANTKCQAAISPLRRKTQNTPDY
AIIPSYIRACDGIGSETHKAMLRAQAMTSSLKAAAVILNVPTTGVPNTFLGTCYKCGGVGHFKKSCPLLNANPQQPAPQT
PNLQKTPGTICPRCKKGKHSMSSCQSKFDISGNLLPPFNVVNTVFNPFPFQGNRGRGQPQAPIPIRAPGFRSPLPVATPI
TAPEMPQTQVQTVPQTLPQILYPQPNANYPLLLSQYNARPPAPQERTQ
>HERVK11_env#LTR/ERVK 5624-7951 [Primates]
MKTTGKRRPCQRPPSDVVRSVPTPQKLARQIKMGLIQSSLMATETHLTNPTSPNYLSFSPYKPKNLTISISLKITSLCSS
LPPSALNLAYNRFYLMILLLILSVSPVSSHTDLPATQNYSYWAYVPFPPLIRPLTWMDAPAEIYTNDSVWMPGATDDHCP
AQPGEEGTAFNVTMGYKYPPLCLGHAPGCIHLETQVWAAYLPERSATEKWGHLVSGLSLSPLRQMKGGVIGDTPYFQYKP
VGKPCPKNFEGPSKTLIWEDCVNSHAVILKNDSYGLVIDWAPKGYLKNSCSSGGKECLEATYFISYWEDEDHHPTLHRRF
SSFFPLKWEDKGITPRHPRPRMIFPILSPEHPELWKLAIAMSGLRVWEGETFLSVVPTTAPHIRDSEPHDKSPLNLFPLF
DADPPLWDSDWHYDNSYRPRYAPLPLQHPQAPRIASLRWRTLGIATAAPLPQYQRRFRHSALFTSNLTIPIQSCVKPPYM
LLVGNIKIWTNNQTVQCINCHLYTCINSRFDSRKSVMLVRAREGIWIPVTLPRPWESSPSIHLINEVLQRILKRSKRFVF
TLIAVIMGLITVTALATTAGMALHQSIQTAHFVNDWQANSTQMWNSQQGIDQKLANQINDLRQSVIWLGDRVVSLEHRMQ
MQCDWNTSDFCITPYSYNETDHSWEMVKGHLLGREDNLSLDITKLKKQIFEASQAHLSIVPGAEALDQVAENLSGLNPTT
WIKSIGGSTVVNFGIMFLCLIGLFLVCRTSQRILRQNRENEQAFIAMAHLYKKKGR
>HERVK14_pol#LTR/ERVK 2535-5183  [Primates]
KWPIRTFRIKRANRSDWIGVSFLGAAIVEPPAPIPLVWLTAKPVWVEQWPLKQEKLEALKELVQEQLQKGHIEPTFSPWN
SPVFVIKKKSGKWRMLTDLRAVNAVIQPMGALQPGLPSPTMIPKYWPLIVIDLKDCFFTIPLAAQDYEKFAFTVPAINNK
EPADRYHWKVLPQGMLNSPTICQTYVGKAIKPVREQFKKCYIIHYMDDILCAAETREELMLCYKQLEKAVNAAGLIIAPD
KIQTSTPFQYLGMKVEQSAIKPQKVQIRRDNLKTLNDFQKLLGDINWIHPTLGIPTYAMSHLFSTLRGDSNLNSKCSLSK
EALEELQLIEEKIQQAQVKRINPMQPLQFLVFPTKHSPTGVIVQQDDLVEWLFLPHNTTKTLTLYLDQIAVLVGQARLRT
TKLMGYDPNQIIVPLTKQQIQQAYINSQEWQVNLAGFVGILDNHYPKSKIFQFLKLTSWILPSITQKAPIEGAITVFTDG
SSNGKASFAGPQQQVFQTDFASAQRAELMAVITVLKTFKQPVNIVSDSAYVVQATQNIECALIQNVTDEQLNLLFHSLQQ
AVQQRHSPFYITHMRAHTNLPGPLTKLNQRADALVSAAFADAQTFHSLTHLNAAGLRKRYGLSWKQAKEIVQHCSACQVL
HLPHQGTGVNPRGLSPNSIWQMDVTHIPAFGKLSFVHVSVDTYSHFIWATCQTGEATAHVKRHLLSCFSVMGIPEKIKTD
NGPGYCSKAMATFFQQWNITHTTGIPYNSQGQAIVERANRTLKTQIQKQKGGDQEYKTPHMQLHLALLTLNFLNLQKDQP
MTAAEQHLTGQKENKKAGQDIWWRDAHTKSWEKGKTIIWGRGFACVSPGDNQVPVWVPTKHLKIYHEPQHLVDPPVQCKL
KV
>MacERV3_gag#LTR/ERVK 154-2130  [Cercopithecidae]
MGQELSQHQIYVGQLKEALKIRGVKVKGNDLFKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKIPVTAF
SYWNLIRDLIDKKEADPQVMAAVAQTEHILKVSSRSNLAKPPQDTEEDLISLESDHEEIKSPSVTDKEMPHENKPKKYPI
LQMLQKEEEINKPNQSDINWDDLEEEAAKYHNPDLPPFTSYPPPYNKTHNEASAPIVMAAIDPKEELKQKIAQLEEQIKL
EELHQSLIIRLQKLKTGNEKIPNSDAMEGSLRPLQRPGQHVPRGGLVASRHREDSSPKDVFPVTETIDEQGQAWRHHTGF
DFTIIKELKTAASQYGATAPYTLAIVESVAENWLTPTDWNTLVRAVLSGGDHLIWKSEFFENCRDTAKRNQQAGNGWDFD
MLTGSGNYADTQAQMQYDPGLFSQIQAAATKAWRKLPVKGDPGASLTAVKQGPDEPFSDFVHRLMTTAGRIFGNAETGVD
YVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQTVRDFLINKGKDKGGCFRCGKRGHFA
KDCRENQNKSPEAKIPGLCPRCKRGRHWANECKSKTDSQGNPLPPRQGNGMRGQPQAPKQAYGAVSFVPASNSNPFQNLV
EQPQEVQDWTSVPPPTQY
>IAPEY3_pol#LTR/ERVK 2926-5548 via tfasty with IAPLTR3_pol, 1 frameshift.  [Mus mouse genus]
GFFLEAAVEGSMPIPWLTEEAVWVPQWPLSSEKLEAATKLISEQLRLGHLEPSTSPWNTPIFVIKKKSGKWRLLHDLRAI
NAQMRLFGSVQRGLPLLSALPKNWEIIIIDIKDCFFSIPLCPQDRQRFAFTIPAINHLEPDQRYQWKVLPQGMANSPTMC
QLYVQLALKSVRNHFPSLLLVLYMDDILICHKNSQLLQDAYPILIKTLGQWGLQVATEKVQVAQMGTFLGSLIYPDKIVP
QKLEIRKDQLHTLNDFQKLLGDINWLRPFLKIPSAELKPLFDILEGDTHISSHRALTPAACQALQTIEKALQDAQLQRID
ESKSFELCVLKTAQLPTAVLWQNGPLLWVHPNASPAKIIEWYPNAVAQLALRGIKAAITHFGKEPHILIVPYTSAQVQTL
AATTDDWAVLVTSYSGQIDNHYPKHPILQFALTQAIVFPVITAKHPLADGVVVYTDGSKSGIGAYVVNDQVTSKQYNETS
PQVIECLVVLEVLKTFPGPLNIVSDSLYVVNAVNTLEVAGLNKPSSKLAHIFQQIQSALLHRRHLVYITHVRAHSGLPGP
MSHGNDLADKATRIVAAALSSQAEAAREFHKRFHVTAETLRRRFYFNQKRSSDIVTQCQNCCQFLPTPHVGVNPRGVRPL
QVWQMDVTHISSFGRNQYLHVSIDTCSGVMFATPLTGEKASHVIQHCLEAWSAWGKPTILKTDNGPAYTSAKFQQFCHQM
DVTHLTGLPYNPQGQGIVERAHRTLKSYFIKQKGGVDETLPSVPRVAVSMALFTLNFLNLDEQGRSAADRHSSDPDRPKE
MVKWKDVLTGLWKGPDPILIRSRGAVCVFPQSEDNPFWLPERLTRKIFIKDGVEDADLPRTASDPDNAELVSGS
>RNIAP1b_gag#LTR/ERVK 446-2242 [Rattus]
MGSSQSVITALETVLKQRDIKIGGRTLKNFVKEVDRVAPWFACSGSFTIASWDKLGRDLDRKLAEKDLRLGTKAIWKLVK
NCLADEVCKAAVVGGQTTLEVXRDSMSETERSERLGARKKKDVLRKKKSPPVKSADKGVLKLSDSGTSLSTQQPGGGASI
YPVKELEALNLDSSDSSENGILDSEEEAELDEEAARYEEEKYHPEEQKKGNKKLLPRQSPTAPPPYEARSCAFSLVPDRV
RRKLRMTFPVFETQEGERVHAPVEYNQIKELAESVRKYGVTANFTLTILERLALNYLTPADWQMIAKATLVNMGQYMEWK
ALWYEAAQTQARANATALTPEQREWTFELLTGQGRFAADQANYHWGAYVQVSSSAIKAWKALTRKGGADNQLTXIIQGPQ
EPFSDFVARMTETAGRIFGDAEQAAPLIEQLVYEQATQECRAAIAPRKNKGLQDWLRVCRELGGPLTNAGLAAAILQSRQ
RPLKGTDTRSCFRCGKMGHLKRDCRITKGDRRPATICARCGKGYHRPDQCRSVRDIKGKLLPPLEAQPNEMSKNGSLGPR
SQGPQRYGNRFQKAMTLTEETPQEVTQNWTCVPPPTSF
>ENS3_gag#LTR/ERVL 907-2364 [Gallus]
MSNSMASMKSEDVLFDLLEKHGARPSVSGVDWARQNWYNLQSVSDRIRVLQNEARTRAGKGKSFICAVLGAALKAAVEFR
EEKNSTETQTIQALQESVKVTQELVKSLRSQITSLEDQLEREKHNSVLLQTAFKELITCKDTGDTVAHSAPQEKVYPQGK
LQEVNERLDKLEASPAHIFPLIKTEYTYDNSEDLDPQMNVKDIPFSATELAKLKKDFSRSPKESETEYVWRVSLTGGDQI
LLTEKEAEGYWGPGVFLTTGNNRAPWSLTQRAAYWAGGLNPLERGDPLAITGTIDQLVENVQKAACLQMMYDRKLQLHHE
SPMMLPVNPERLTPLIRGLPESLKPIGIQLQGKIQAMSQGERTWAALEGSVAPNHQSGSKVWTWGEVAQELINYGRKYGP
VVSTSSKFEPRGVRLAVASLASRPPSPKLNEIKKISSPVKTGRRSIDHKRSGLWALGWKKGIPRHLMDGLTTDRLEMLVT
ECPYKA
>XP_601017_gag#LTR/ERVK gi|61859898|ref|XP_601017.1| PREDICTED: similar to endogenous retroviral sequence K, 6, partial [Bos taurus]
FTVSKSQRHIYDKWRHEQGLEGRLNKAASPAEREKGMLDLDIWKRVKNNVLRAYRQGVRIPPQWWVTWSLIQAVIEQIEG
HNVDLEVETVQSLHEYELKEQDMQGALKYNNVMLNQTQSQEKQLGDMCIQDVSKLKPLRAKNTQGHEEKYAQFIGKLKDA
IEKSIRDETLQNIIFKQLAFENANEECRSMFRPIRETSSLMEYLKACRDIGSMSHRAKLVALETCNVQKAASAKCFNCGK
AGRMKKQCQMPVQTAKNNLTSNKERAPGVCPKCKRGFHWLNDPTTKGGPNIMTLQAATSKSACIDIPSPYDMELIELYNP
HKIPTGYYGPIPPGTVGLIWGHSSCTMKGLVVLTGVVDEDYEGEIHVMVNVVELRNVYLQKGECFAQLLLLPYVKPMRAS
DKIRQGGFGSINLTTVLSTLLKEHQKPTLTLKIREKNFTGMLDTGADISIIRTEEWSLEWVYVKPYITNSSDTRADRHFA
EENSKKPLEANTPIWLFWHLGPGHSVPSTIPSNSLHILNLSEARSISAGRLHDATSAEACSV
>ERV3-2_Crp-I_2p#LTR/ERVL 1566..4844[Crocodylidae]
ESRPTQPPVQGAIVGAVEDRGPVTQNNISPLIKVPTKICLNGRKKLIDMLLDTGAQLCVLDCAEWKGAQGTPYQVVGVGG
ARRPGHLVRPTFTLPNGSVVTAAAVMLRGGPNLLGLNVLQGQQFILKQETWQFGCTTAQEIEQEDVMTVVAQCFMTPLAL
PAMKGVHRSQYRTPPEATQPIQDIINRQLEDGTIIRTHSPYNNPVWPVRKPSGDWRLTIDFRALNANTNHLTAAVPSMPA
LTENIRCYGPQWMGSVDIKDMFFAIPIHEDHWPLFAFTWLGQQYTYTVLPQGWVHSPTLAHGVLAAVVHEVQLSHPKVHV
WQYVDDVMVGGQDRELTICAFESLKEKVQAFGFTLSSKKIQEVGPQCEFLGIQWQQGGPTIPAKELQSLVDTPAPNNVKE
LQAQLGALNFWCLHVPEFSVLAQPLYNLCKKKAQWEWGPEHQHAMRALKEAVTIHASLAARRPEGELWLHVNVSNGGPQW
SLWQRDTPKAEGKPLGFWSRGWKGAKARYTLLEQMLCAAAAALEATEALRGELPTVITTPVPILGMALSDRHLPPGGRAQ
ETTVQKWIYYILSQAQRVTPKGRPALVEKVTENTVNIYPDATSSDEPSPIKEAPPFSPDMETSKDVEVWFTDGSAKGRTW
RSAAIRIRDGKQLTMEGNGQSAQYAELAAVVNVANYELLLGSGYTKPIYIYCDSWMVVEGCTKWLPLWKKENFKRQGKNI
WSYDNWETLWVMAEGGLPLHIRHVSAAHGNKKAEGPEAKWNRQVDELAKGSTEALVAEAEAQPPPEKAPSPSLQATPGVL
AAEWLHRQHGHPGRDGTARLAATWGIHLTKREARELVNSCITCQEVKARLTPALTTPLSLRDGKVIWQVWQCDFIGPLPR
TPKKRQYVFVAVEAVTRMMFARASAKATAQDTCAALENLLAIYPPPVELQSDNGSHFHNHLVYEWAAKHQVLWTYHIPYH
PQSNGLVERANGILKCNLRMAAGSAFKDWDLHLDRSVNWANNRPRSGGSPMQQAFGQGGPREPAVERPRGGWGKLQAGDQ
VVVKHPQGDKWEGVLMARDTCNSWWVSRSDPSNGSQTPFFLVPADWVHPQAQP
>ERVL47_gag#LTR/ERVL 351-1556 [Primates]
MRTSTSVLASSLADKLETQEAQLETXACRFVRLGGRKLRRPKVRAVLAKPDWDAKTWNPWEPTSESDXDIEVISEEEDNY
PPLLRARPLMQRKAKAQHMQPGNNGQPFQETXTVREYTSAELLDIAKTFKQLPRESLATWMVRLWDTGGDGISLAGSEAE
KMSNITTHPALRQHLHNARTVQGNHSLMDWIILAMREAWPNEGDFPGQTPAWRSLEEAQSDLXELGMRQAIYARQFAGPD
KAVFTAGMKNKLLQGAPREWHGPLLSLLSPLVGQDVYDVGEAXADLGETEKGRDKVRLVTKGKGKKGETKSAGLKKGGQK
GPVRITRKQMWYDLISAGVDKEKIDRQPNAVLVGLWKDLTPDQQFRPLPSAPPEEGEGEEETPRKRTPISAFQGWTPPQP
RD
>ERV3-2_Crp-I_3p#LTR/ERVL 4732..6507[Crocodylidae]
WHGTHVTHGGYQGQIHLTGARLHFSLFLQIGSIRRHSRSNLGVLWSRHPAPEQRRHPHPAMKGWNAIMTGLLIVCCCLTD
VGHSHAPEPQIAPTAKASDTLKYWERPTAIEEVRNWPLSRRRWIVDWQGGTCQCYCGTGWLLGFLPYAKIGKNKCGTGGD
CCGFFQWPWCCYILPAGTLPTLSPDVTTAVTPPAARNSTTTQSPKRRPKPPTPPPWETIAPAVPLPDDTLAQWCTAHQIH
RSSKYSKVLWWFKNSSYAVKWWSTEWEANTSHVPGILWFRHIDEGGIAHGIEYTIAAYRQTVWKSLQGTALVNPEKLAEP
MGGTVPESFLQDTHAIVIPGQCAFKYANRDAFQRINQPHWEVYQSQKQEGKWLSTQTGKPLSVFCIKQGCTLLIQKEPPQ
VYPLPHLSNVTPWWRSQTRAPVLLNASLFNTRITFNPEQWFIRTAFPNCSAGAQLAEKMLRWTWPTVFQPTAQQPPSTQK
KRGTLDHVWNGLNSAMEVWNIDKSQKNTQGIMDIRRAIGSLTKGGIINNMALEHTDELVATISREAAQISYLLMHAAFQA
DANQTWSTACAQVQLSLNFHFSQVMRDLRHKE
>TguERVK7_gag#LTR/ERVK 506-3218 via tfasty with TguERVK5_gag, 1 frameshift and 1 stopcodon. [Estrildidae]
MGQSHSTSDRDLYKQLNHLLRSHNSNLPKKELRKLLEWILLKFPYAERSAVFCGDFWESVGHTLFNDISRRDPYACELLP
AYRVLAGLCASQKPXIAAKPLPAVAQLSPPDRPPTPRCGDXAGEAAGDSAVSERAALPAAATPSLPRSPEPALAATSSPP
NPPRAPPPPRPAPRHCLSRLWWLLxPNFYKIKQRPFCKHKPNQWLFCKHNLKRQLRFCRRSTRSPPRPPPRPARKPPGPA
NXPATPSPLRSPDPTLASTSSLPSCPEPLPEAGHVSPPEPPGTCPRGRAPPQTPRASRRCPGXKRRAPAARPPSWXRGRP
PRRPRXRXPHPPAAPRPPPLAAEPRXPAPAPLPGFPTLSPYPSASLPPPDLHSXXAPKATATGYPSANAGSSQVLLPTSS
TPPALLPQLAAAPASRTSSXPPXPGXETTQREXEXNNVXAASTNKGQTENYFTPANPNPPIPISPNSQQSADNLQLTNCP
EIRRDSRKEDNLHSRAMXAVPSQQPANPRTWTFIPSQDLKELRKAINDGGISSSYFKQLLKSTLERHTLTPHDCKHLATT
FLTDSQYILWDLKWKRMLAGVLTTYRQSTDADLRTLTLSKLTGDPPDDKIEHQANLPKMVLDDVKRMARRAFLQIQPAGT
SEEAYNLVTQGSSEPFTTFVDRVIQATERQCGDDLARPIMIRDILENNANAQCKRIIKALGKERPTVPEMIEACNYVGSP
HDVAVVQASEPEETRGDKLERALAAQAQQAEARDQRLTELLAALHLNSQQQYNTMAVMQAALPLGPCYLCKKPGHIVKDC
TEVNKSPQTPDSCTTCKKGKHXPWQCRSKXDASRRPNPKNSKASAPRHRVTKQIVAPQTPEVKSANTPTPMPFAXSPAQS
QLMTQAYYPQAPGALWRPPSQQPS
>SRV_RN_gag#LTR/ERVK 144-2018  [Rattus]
MGQALSQHEVYVRQLKEALKVRGVKVKTNDLFKFFDFVKDLCPWFPQEGTIDVKRWNRVGDALKDFYNTFGPEKVPVTAF
SYWNLIKELIDKKETCPTVIAAISQTEEILKDSSKTNKVKTQGEEQIDLISLESEDEGAQGGHGVPEDRKKVHKKDDKRE
KSDIRLKPDVRPKKCPPLKDLSDLDNENDPKSAKVNWDSLEDEAAKYRNPNWLPPFSLPPPYNQASVPTVMXVIVDPKQE
LKXKITYLEEQIKLEELHQSLINKLQKLKTGDESVTDTSSKAKTTRPPQQPGQFVPKGKMLVNLNNENENTDVLEAFPVT
ESVDAQGQPWRHHQGFDFKIIKELKTAVAQYGATAPYTLAILESVAENWLTPGDWNTLVRAVLTGGDYLLWKSEFFENCR
ETVKRNAQAGNGWTFDTLTGSGNYDTNDAQMQCDPGLFAQIQAAATRAWRKLPVKGDPGASLTGVKQGPDEPFADFVHRL
MTTAGRIFGSAEAGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQTVKEFITNRD
KNKRGCFKCGKAGHYAKDCRRDPIRKQSDLPAPGXCPKCKRGKHWANFCRSKRDTEGNPIHHQGN
>SMRV-H_gag#LTR/ERVK gi|74589|pir||FOLJHD gag polyprotein - SMRV-H [Squirrel monkey retrovirus]
MGQASSHSENDLFISHLKESLKVRRIRVRKKDLVSFFSFIFKTCPWFPQEGSIDSRVWGRVGDCLNDYYRVFGPETIPIT
TFNYYNLIRDVLTNQSDSPDIQRLCKEGHKILISHSRPPSRQAPVTITTSEKASSRPPSRAPSTCPSVAIDIGSHDTGQS
SLYPNLATLTDPPIQSPHSRAHTPPQHLPLLANSKTLHNSGSQDDQLNPADQADLEEAAAQYNNPDWPQLTNTPALPPFR
PPSYVSTAVPPVAVAAPVLHAPTSGVPGSPTAPNLPGVALAKPSGPIDETVSLLDGVKTLVTKLSDLALLPPAGVMAFPV
TRSQGQVSSNTTGRASPHPDTHTIPEEEEADSGESDSEDDEEESSEPTEPTYTHSYKRLNLKTIEKIKTAVANYGPTAPF
TVALVESLSERWLTPSDWFFLSRAALSGGDNILWKSEYEDISKQFAERTRVRPPPKDGPLKIPGASPYQNNDKQAQFPPG
LLTQIQSAGLKAWKRLPQKGAATTSLAKIRQGPDESYSDFVSRLQETADRLFGSGESESSFVKHLAYENANPACQSAIRP
FRQKELSTMSPLLWYCSAHAVGLAIGAALQNLAPAQLLEPRPAFAIIVTNPAIFQETAPKKIQPPTQLPTQPNAPQASLI
KNLGPTTKCPRCKKGFHWASECRSRLDINGQPIIKQGNLNRGQPQGPTTGMNSGASQFTPQYRQPTPALPVINHAATSQT
SGEQQRAVQDWTSVPPPTQY
>SRV_RN_pro#LTR/ERVK 2019-2996 [Rattus]
EREGPAPGPETSLWGSQLCSSQLQQSISKLSRATPGSAGLDLCSTSHTVLTPEMGAQALNTGIYGPLPSQTFGLIIGRSS
VTMKGLQIYPGVIDNDYTGEIKVMAKAVDNIITIPQXERIAQLILLPLIKTDNKIQHPKRGDRGFGSSNIYWVQEITAQK
PSLKLWLDGKLFTGLIDTGADVTIIKQEDWPSSWPTVETLTNLRGIGQSSNPRQSSKYLTWRDKENNSGLIKPFVIPHLP
VNLWGRDLLSQMKVIMCSPNEVIAAQMLAQGYSPGKGLGKQENGVLQPISATGQKDKKGLGNF
>TguERVK1_gag#LTR/ERVK 129-2344 (orf continues to 2488) [Estrildidae]
MDSIARVVSAIYKQWGIECKLKDFYLAIARLLELGATERPVDAXHPGIWEKCTATLAEDTKSSGSGKSLKAWGKVEKAPR
RAIEEQETWSAARTCLLVTPGLGVGAGAQTAPEDDPPGSGDPGGPGASPPSPGQSPIPAAETPRKTAASPSVPPPPVXDP
LPEVQQRAECFWQGLAGEARGAETAAREEILTTPPPYPFENGAGRQGEGRGAGGLGAKTREARGFRDARAREKEEESGRG
RGANRQPRLTPLPFKGETSPCRRQGKPGGRERRHPRGEERARSRTKRHRAPEMRWHSTSDSESGSSSAGSEELTEAGWDS
ETEETEPTRFKTKPSKALSRTEKQPQYEPAQFTGWGEIKIACAEWSPAAAIQAFPVRLTGPEGNQQRVYTPINPKDVQSI
VKAIAEKGINSAIVSTLIDGLFSNDDLLPFDIERIGRMILDGAGMIVFRQEWEDNCRKQLAQASGARQPLHRSSLSRLIG
KHDDMITPQQQAAQMQAEEVRATTRAAREAIRAASRVVAKPAPWSTVRQAESESFTQFVDRLQAAIDSSTLPAEAKGPVV
ADCLRQQCNSVTKDILRSLPAGASLADMIRHVVREEHLTPIQAAVHTLTSAMACFKCGEAGHIAVSCPQPARRPAAAPPP
QTRPRGSCWGCGRKGHLARECRSRPQGNGKGRGPAGRTQPPPAANTRRPIHANPQWGGEPSYPIPPQEAASFIPPPATQL
QSLATQPAVPSYPPPPQA
>TguERVK1_env#LTR/ERVK 5304-7223 [Estrildidae]
WKTVSFRLQDTLVDRPRDAYTPAPEGDDGPPSRQTKPESPTAVRPRHAQCLCAILLLGLVAGGQADPGHYPHQPFRWVMQ
HLSSDKVFKEVTTANAPSFVFHIADLFPGQPKLRPXSPRIVLMYISYWCPASNPGKRYCDYPGWGHCGYWGCETIVTDAR
PWGDGWQPQEPDKFLQFTWAPFGCGDHNAQPRQRGCVSYNMTVLQPDHPSWATGRTWTVVLRGPRRWVNVRIIRLQPPAP
RPVGPNKVIKNVLRGKNTTHPKTLPPKATDTPTGLADTPQIGRTAESDPNPIFRMLEATFLTLNETKPNLTNSCWLCYDV
KPPFYEGIALDTPFSYSTASAPHQCRWDTPRRGITLSQITGQGRCFGNATLAKQKGNFCTKVVKPNRKTNKWVIPSASGM
WVCQRSGVSPCVFLAKFNDSTDFCVQVLIVPRVLYHSDEEIYHLLEEPNRLHKREIITGITIAMLLGLGAAGTATGVSAI
ATQQHGLSQLQMTIDEDLQRIEKSISYLEKSVSSLSEVVLQNRRGLDLLFMQQGGLCAALKEECCFYADHTGVVKDSMAE
LRDRLAQRKRDRETQQSWFESWFNQSPWLTTLISALVGPLAILLLAITIGPCLLNKLVSFVQARLERANILFVGHQQML
>Gypsy37_AG#LTR/Gypsy 69-4367 [Anopheles genus]
MTTIEELCENLTKIGLARKCQQLGLATSGGKQEMAKRIIDHTTMATNDENDGDHQNREIREAVNAREQNAVLQNDDGVSE
NDDLHTHNDDNDDREDGGARAKCSRNDDDERYDDDGVGDNDDGGNDDYNDDDDDEDNDDDDDDDALLFQTAIRTSTPAAR
KERKFHGTSMVYSFRDMEESIDTFGADEGEDVRLWLKQLEMISRSARWNNEQMLIMCRKKLTGTARRFVFSLRDASSYSV
VKKALIKEFAPFVRATDVHRALANRKKKPTETMRDYVYEMQRIALPIELDEPSLCEYIVDGVTDDEFYRSTLYEANTVQR
LKEKLSIFEKATKNTKVAKKNRHDDNADVKKERQRFEGKCKGEVKRKCFNCGGTTHVASECPKKNDGPKCFRCNDFGHLS
KECPKTQKTNKKDNDARINVVKAAVNEKLSVSVELFGQNIKAVVDTGSDISLMRFDLFEELKSNHIQMHESNLKVRGYGG
GVSSVRGKTTISATIDAEIFDIQFYVVPCEAIDSPMLIGMEFLSSVDYSITPEGVTIKKYRTDETVGIETKWIRRIAGYI
DENELLVPTKYREEVMTLIEDYKPQKNMTDRNQLTITLSDLNVVCENPRRLALLEKEVVRKQIDEWLDEGIIQPSQSEYA
SPIVVVPKKDGSYRVCVDYRELNKKIVRDKFPMPNVEEQVDQLAEARVYTTLDLKNSYFHVPVDESSRKYTAFVADSGQY
EFLRAPFGLCISGSGFGRFINDVLREFIRDGTVLAFVDDIIIPSKTEEDGLNAMKRVFEVAAKAGLTFNWKKCVFLQRRV
EYLGYTIYDGKIEPAPAKIEKLKQFPQPTTVKQLQRFYGLASYFRKFVPSFAGIARPLSELLKKDRFTELNDEAMNSFLC
LKDILAAYPVLRIFRADGDVELHTDASKTAIAGILMQRAEDDGKFHPCYYFSRLTSSAEKNYHSFELEALAVVESVRKFR
CYLLGRTFKIVTDCMAFKDSVKKKKLNARIAKYVLALSEFDYVMEHRPGEKMPHVDALSRANVMIISTTILSKIRMAQNK
DDRAKAIIATLERGDTVDKFILNNGVIYENDGDKRRLYVPKSMEIDIIRSAHEQGHFGVRKTKERINADYFIVGLDEKIK
SCIDTCVPCIIGEKKRGKPEGELQPIPKGDVPLDTLHVDHLGPMPSTKKSYGYILTVIDAFTKFVWLFTTKSTTAEEVVK
KLQVITSTFGNPRRIISDRGSAFTSGHFTRFCENEGIEHHTIATGVPRGNGQVERVHRIIIPMLTKLSMEKPEEWFKHVA
RVQKCLNNSWQRTINMTPFELMTGIKMRTKEDAVLHELLSREIQNDFTEGRDELRRTAKRNIEKMQEENCKYYNLRRRPS
RQFKIGDLVAIPKTQYGVGQKFKPRFYGPYEITRILDNDRYEVKKLDEETEGPKKTLTAGSCIKTWILPGRK
>Gypsy35_DR#LTR/Gypsy 47-4462 [Danio rerio]
MPPKKKTQLAADVDVDVDEEDQRDTSGDPVHPEDIPKPTGDSAITALAGMFQSFLQYQKERDERQEKESARREQQYKVLT
HQITQMQMDLDRARHGALSSERSVARVLDYMPQLPKLQDTDDIEHFLTTFERLAEVYKWPKEDWAIHLVPLLTGKARSAF
VAMSPAHTTDYEKVKEVILKKYEINAETYRLRFRALNTPSDESPMELYVRLKDLFSKWVNFKVSSKTNLMETMVLEQYMR
VLYPEVRTWVKERDPVTAEEAAKLVESYVAARKGFSGAFRYAGSLQAARGKSEGSGGSSYSHSQTQIIRTTNPKPIPPKL
ETSLDTHQTPSSTGVVCYNCGKPSHTSPQCPLKKPKSARLCYLPRPTPTTDCSFSREPTITVLLNGKPLTALVDTGCART
LVQSQYIARDLWSENTVTVCCVHGDKADLPTAEVYIEVNKQSYLMNVGIAANLPYPVLLGTDMPVLADLVQETAWCGVVT
RAQSQKLIQSSKDSVQSTLKEMPFFTEECVDNAVVSKEDRLERRRNWVADLINSSEQQQFDLAEPEMNENDLTIPNELAK
LQRDDQTLSDCFQKADNDSVLSSLCGETFLIKNSLLYRQTKEEGTQLLVPRAYRREVLKLGHSIPWAGHLGFMKTLMRIS
KRFYWPGMYSEVKDYCKSCPECQMSTGRAPPIAPLVPIPAVETPFERIGVDIVGPVERSQKGNRFILVICDYATRYPEAY
PLREVTAKQIASALLHFFSHVGIPKEVLTDQGPNFMSRTLQQVYQLLGIKRVRTTPYHPQTDGLVERFNQTLKSMLKKFV
SESGKDWDKWLPYLLFAYREVPQASTGFSPFELLFAHQVRGPLDVLRDSWEAQDKPTKHNILSYVLKMREQLQQSSALAH
QNLKDSQVKQKAWYDQKARSRSFQPGDQVLLLLPTSENKLLAKWQGPFQVRRKLGPVTYEIEMPSRQHPLQTFHVNMLKQ
WHDRSSQPESPQDAVKELLVRAVQEEDEIEEQYLPVQQGNGQLDLQHLTVDQQQQLLECIPDHLFLETPGRTNIIEHHIH
LKEAKPIRQPVYRVPERLLKVMKQELELMQELEVIEPSSSEWSNPIVLVPKKDGSLRFCLDFRKLNSVSKFDPYPMPRVD
DLVERLSKAKFLTTLDLCKGYWQIALSADSKEMTAFKTPFGHYHFRVLPFGLHGAPATFQRMIDQILRGTETFAAAYLDD
IIIFSRSWQDHLQHLQEVLSRIKSAGLTIRPDKCAIAKEETCYLGHVLGHGVIRPQVGKIEAIKNAERPTTKKQVRAFLG
LVGWYRRFIPNFSTRAVALTELTKKDKPNMLNWTTDCENAFIDLKEALCTEAILQSPDFGKPFTVQTDASERGLGAVLLQ
GEQGKLHPIAYISRKLLPRETRYSTVEKECLAVKWALDSFRYYLIGRQFTLETDHRALTWLNQMKDTNARITRWFLAVQP
FQFKVNYRTGLENCAADFLSRTPQRVSREGGG
>Gypsy40_AG_pol#LTR/Gypsy 1217-4564 [Anopheles genus]
RSKFSRGLCTSASEVNAVNGMPYILLHIDNKCAKILVDSGSNKNFISPNVFPKSMEKKCKPISIANSNGTHYANKKVDTK
MFNSDVTFFLFKFHNYFDGILGYESLSELQAVLDTGKHKLIFPNTSIDLSIRQLNPETHTVEANSVTQIKVPVSHESGNV
FLPDDVRINDIVIPSGLYVAKNSNITALASNFGRKMVFFFTKPVVTFKVDKIAEVNNTIQTPDTISKTEIENMIKTDNLN
QEEKEHLLKVLYENISIIPRNNEKLSCVTSVKHIINTVDEIPVHCKSYRYPHIHKAEIQKQINEMLADGIIQHSISPWTS
PIWIVPKKPDSNGAKQWRIVVDYRKLNEKTIDDKYPIPNIEEILDKLGRSMYFTTLDLKSGFHQIEVELKDRPKTAFSTE
KGHFEFIRMPFGLKNAPSTFQRAMNNILNELIGTCCLVYLDDIIVFGSSLQQHIENLQKVLHRLKQANLKIKIDKCEFLQ
KECEFLGHIVTQEGIKPNPNKIEKIVSWPLPKTVTQIKAFLGILGYYRKFIKDFAKLTKPLTKCLKKDSKIVHDEIFINC
FRDCKQMLVMDPILKYPDFSKKFILETDASDFALGAVLSQRFEDSKEHPIAYASRTLNDTECRYSATEKELLAIIYAIKH
FRPYIYGNKFEIRTDHKPLLWLRQKNDLNRKLLRWKLELEEFEFDIKYKKGTTNSNADSLSRIEPAINANVSESLMTQHS
SNTDDNDYIPSTERPINEFRNQIILEQTNESSTETLKQFPKYSKIIIKKPSFTTDNLVQIIQKYAAPNCLNGIYCDKNIL
KMLHEVYKKYYSRAKSLKFRWTTKMLVDVTDELEQDQIIQTYHDTNHRGVTESTKHLQRKYFFPQMKSKITKYINLCALC
KKSKYERHPYKIKYKQTDTPKRPLEIVHTDIFIMKDKHYLTFCDKFSRLALAVPIKTRYTVHILKGISTFIATVGKPLLL
IMDQECSFKSIAVQSFLNDNLIKYHYTSVAQSSSNGTVEIVHRTIREIHNILSQKESTKDLSESTKINLAVATYNDSNHS
ETNLTPNELFRGFRNDQPISSILDEHIQAKEKLYAVVHHKMLEQKEKRIAKLNEKREEPIGLSEGETVFLRKKTI
>Gypsy53_DR#LTR/Gypsy 134-4183 [Danio rerio]
MAGEFRRPDPLVFNENIAENWRMFEQEFDIFIAAAHGDKSPRTQAFILLNLAGPEAIERERSFVYAQEVRVPGENDSIIT
IPAESREDPECLKRKFRELCAPHVNITMERHKFNTRSQRPGETFESYISDLKIKAKSCKFGALQDELIRDRLLCGIQSDI
LRKSLLRDPELTLNKAISACQIYEQTEQHTKDLATLQRTSATVHAVHQAFTGKNKRYKPKHTESNKGPTAIRNCNNCGGD
HPAKRDKCPAFGQQCNSCKKWNHFKKCCRSTQSNTTKRRFTKTVHNVEPHQSSSEESESFFVDGVTDANVYSTANAAHKS
ELYSTVHVHGKSVELKVDTGAKCNVMDLHTFQHLRKQEKLSMSSTAKLIAYGGNELHTLGTVILPCSLASQSYDLLFYVI
KNSAQPLLGLSDCIRMKLLTLNKEVHQLNTYSQDEFTDTILTKYDDLFKDEVGKLPVTYSIKLDPNVPPAVRPARRIPVA
MQDKVKKELQRMTDLNVITPVTEPTDWVSSMVAAHKKDSNSIRICIDPRDLNMAIQRPHHPMRTVEEVATQMSNSVVFSV
LDAKSSFWQISLDHKSSLLTTFSTPFGRYRFLRMPFGINSASEVFQRSMEQIFAGYPCAVIVDDILVGGRTIQEHDDNLE
KVLARARQVNLRLNPQKCKFRLKEVSYVGHIFSSDGLHADPSKIKAITEMPVPANATALMRFLGMVNYMGKFIPNLSDIS
APLRQLTHKDTTWCWLQQHQDCFNTLKNCLTCPPVLSYYNVDNPVTLTCDSSQFGLGAACLQDNKPIAYASRVLTDTEQR
YAQIEKELLAVVFACTKFNDYIYGKPVTIETDHQPLVTITKRPIHSTPARLQRMLLQLQRYNISLVYKKGKQMYIADTLS
RAPQTSAHEHPEDKHTFEVMNICNISSSRLDELKLHTTGDATLQLLANTIKHGWPNKLHSLPPVLWPFYPYRHELITDDS
LVWKGHKVIIPETLRLQYTQIVHRGHPGAEATKQRARGIFFWPTMTKDIDAYTTSCAICNSTRPHQQKEPMKLHTVPSLP
WSTVAADIFEWNNHPYLVLVDSYSGWYEIDQLRDMTSTCVIQKLKRHFSVHGSPQTLITDNGRQFVSSEFNDFALAWDFT
HTTSSPNYPQSNGLAERAVRSAKQLMEKSKRDGTDVYLNLLNLRNIPRDSKLGSPAQRLMSRQTRSTLPLHSSLLKPSPL
SSNDIHAQLKKRRMSQKRSYDKTSKRLNTLSKGQTVRMQTPHGYDRKGVVKEICCEPRSYIVLSGGKEYRRNRRHLLSVK
EPEPHQHDDDEYKLPGDPTKSEVTLPKIPVAHTQTTTGQLTSQTHTQTRTCPYVTGSGRTIRPNSKYKD
>Gypsy53_AG_gag#LTR/Gypsy 115-1002 [Anopheles genus]
MMNSEDKKTDAAADGTSRDAAQSLVGEIKAPRLNPPSMTDTNIETYFMSLEFWFAASGISSAYDVRRYNIVMAQVPPNKL
TELRSIIDGTPAYDKYKYIKRELIVHFADSQQRRLQRVLSDMPLGDMKPSRLFNEMKRVAGDALSEEVLLDLWAARLPPH
AQVAVIASRGDAADKTTIADAIVDSMGLRKIDAIDHMQNFAMAPSHIREQEVVDPIQELHREIAELSKRLERVLPNRRNE
RGRSLSRSRRSDWNDNRSLREPSTGPCWYHRTFGNDARRCRKPCTTGARFASNQQ
>Gypsy16_AG_pol#LTR/Gypsy 2133-5828 [Anopheles genus]
FFRPSPAGIEQLPVMTLNLSANNSTTIKVEKAANKYSSLFIDTGAAVSLFKIGKIRSQHEIDSNNKVRLTGITNNSLITY
GTISSNLIFNNATVSHKFHLIPDIIEIEADGILGRDFFTKYKCKIDYEYYLLNFDINGISISHPIEDNSLLIPARSEIIH
KIDLKNLKKDSVVHAQEITTGIFCANTIVSKNNPCIKFINTTEKDTIINTKFFKPTIEPINNFEIYKVAETKTNMHRVKE
ILSKINLKNYPDIISQEISKLVNKFSDLFCLNEDPITTNNFYKQTITPKDNIPTYIPNYKQIHSQSKEIDQQVNKMLENN
IIENSVSPYNSPILLVPKKTGNDKKWRLVVDFRQLNKKILPDKFPLPRIDTILDQLGNAKYFSTLDLMSGFHQIPLEKES
RKYTAFSTPKGHYQFTRLPFGLNISPNSFQRMMAIAMAGLTPEIAFIYIDDIIVIGSSMKNHIENLTQVFNRLRYYNLKL
NPEKCKFFKSDVTYLGHKITDQGIYPDETKFETIRKFPIPTNADEVRRFVAFCNYYRKFIQNFAKIAKPLNDLLKKGTLF
EWKKEQQTAFDSLKEHLLSPTILKYPDFSKDFIITTDASNFACGAVLSQITNGQDFPIAFASKTFTKGEKNKSIIEKELV
AIHWAVKHFKPYVYGRKFTIRTDHRPLVYLFGMKNPTSKLTRIRLDLEEFDFTIQFVAGKSNVAADALSRIVYNSDELKE
LIPKTKEEDIKSIKNNSIMVVNTRAMVKAQKKVKDTPTAGRNKEEVTNQVFWKTDRPSEVNKILKIKSEVKRNGIEIKVC
SHNYNKQLGKRVIPLNNSKGQNGSQEIELALLDICQIAKKFNRDKLAISVEDKLFEYYSQLTIKEIADTAIFGYEIILFD
PPKWITSEKEKLKIMEEYHAIPTGGHIGQYRLYLKIREKFKWNNMKQDIISYVQKCEICKVSKVNKHTKEKSIITSTPAK
PFTIISIDTVGPLPKTINNNRYAITIQCDLSKYIVIIPIKNKEANTIAKALVEHFILTYGSFLELRSDQGLEYNNEVLSK
IAQILKIKQTFSTPYHPQTIGALERNHRSLNEYLRAFTNEHHDDWDDWIKFYEFVYNTTPHTETKYTPFELVFGRTANLP
QEIYKHKIDPVYNIEQYYNEMKFKLQKSNEIARRNIIIEKEKREKELNQHINPIDVSIGDLVYLKNENRKKLDPLYLGPF
IITNIKDPNCTIKNKHTQKTTTVHKNRLIKN
>Gypsy12-PTR#LTR/Gypsy 70-2739 (partial consensus) [Populus trichocarpa]
MKQQQEAQQQNQQNQQQILEDIVQQLRNMSTRMDQMAKAQGKRPMGSPPHSPTRTNNGITRHEVVPQEGFQQVQLKSIRL
EFPRFNGDDPIGWVYKANQFFNFHNTPAQHRLFIASFHMEGKAITWYQELEETGILTSWEAFIKALQIRFGTSSYDDPME
ALISIKQVSTVELYKTQFEMLSNRVRGLSDSHRLSCFLGGLKEEIRMGVRMLNPQNLVAAYELARMQEENLTIMRKSWRP
SAMGFQGRNPTLTQPRAENKPIPVQRLTPAQMKEKRDKGLCFKCDASGIGLGAVLMQEGRPISYFSKSLKGRELSLSTYE
KEFLALVTAVQKWRPYLLGQAFKVKTDQQSLKYLLEQRVGTPTQQKWLSKLIGYDFVVEFRAGRENLVADALSRQEDTTE
KGTLWAISTPIVNWADRLKDSYKTDPEIQTIMQQLDQETIGSLKYRLRGGILYYKHRVYISQSSPIKNDILNYIHDSPTS
GHTGFERTLKRARRDFFWVGMKSDIQNYIKHCDVCQRAKGENTKPSGLLQPLPIPTRPWSSISMDFIEGLLKSNQYSVIM
VVVDRLTKYAHFIPVSHPYSATKIANLFSQNVVKLHGLPNNIVSDRDPTFTSKFLGELFQIQGVKLLMSTAYHPQTNGQT
EATNKTLEGYLRCYVGDNPKEWSNWLTMAEYCYNTSYHSSLKSTPFEATYGYPPPSLTDYIPGSTKNQATEEHLQHRTEQ
IAEIKHNLSQAQARQKKQADKGRKEIQFSEGEWVYLRLQPYRQSSMQRKKNVKLAYKYFGPFQILKKVGEVAYQLDLPKE
ARIHITFHVSLLKKWVGKGIVPEPKLPSLETKLKSQPEPAEIIDRRSQVSRGKKKEEVLLRWEGQPKEDAVWVDEEWLEG
SYPHLEGKVF
>Gypsy10_VC_pol#LTR/Gypsy 1771-5844 Gypsy15_VC_pol almost identical [Volvox carteri]
EFAQGGIEGYSLSFLLRGFVLWSARLDPLRWQSLRRRFSFDTVAVKPGFDSECNITVPRGRSLCSVDVGGHTVLFVPASL
TQLHVLLRHYLACKHRRPDTAAGILLPSHISRRASTLLAGMRRVLMFPAKSVLCNGLSLEGKTVELPGIPYPAELWYDAP
SPCLSVAREPFASSLCAVASGSVDTRVALPLVSLRTGGQTFSALVDTGATHDFISESLVQRLHLPVHSSDWSHVSLADGG
RQAIVGQVSFRVAVGSLYLTVSPYVLPSLTDAAPFILGSDTLRKHSASLDFQNNILRLSKGTVRYSIPWRASSNDSGDSG
ATSSAPLVNFAAAAMCAHATPESIGRKAAMRLIRKGAHALLVRPSVSLNATSVIPPTQDPEVSALLEEYADVFREIPGIP
PVRPVDHTIPLVPDAQPVARPMYRLSPLELDEVKRQVTELLAKGMIRPSTSPFSAPILFVGKKDGSLRMCIDYRGLNSMT
TKNRYPLPRVDDLLDKLRGSAYFSSIDLQQGYNQIRIAESDIPKTAFRTPFGHFEYTVLSFGLVNAPATFQAVIDRMFRP
YIDKFVVCYLDDILVYSKTKEEHLQHLRLVLDVLRREQLYAKQSKCHWAKSEVEYLGHVVSVDGVRMDPKKTAAVRDWPV
PTSLLELRKFLGLTNYFRKFIANYSSLAAPLTSLTRKGAFSSADVWTAECQASFEAIKRAVSDDIVLRFPDYSQPFRVEL
ISDASLHGTGAVLLQNGHPVVFSSKKFSAAERGYTTGEQELLAVVHTLREWRCCLEGRPFVVKTDHKPLTFLQGVPTLNR
RQARWLEYMQRFNFTWEHVSGSVNVADALSRHPSLHSVVLSVVTRRQSAAADLTISAFAKRIVDGYKTDPWFNDPNNVEQ
LTRVQGLWVRTDGDRRQTVVPNDDLLRRDILYRVHQDPLSGHVGSTRLIELLRRNFWWPRMARDAASFVEQCDVCQRQKP
KSGKQSGLLQPLPIPDSPWESVSLDYVVALPLSEGGYDAVLVIVDRLNKMVHLVPTTTTVTAEQTARLFFDNVVRLHGVP
KQIISDRGPQFGAKFWGALGTLANFRVSLSTAYHPQTDGQTERMNRTLGDMLRTYAGNNPRVWDTYLSAAEFAMNNAVNR
STGQSPFFLNYGFHPATPVSRELDVPVPAAKSFIKSYVARIAEAKQCLEKAITTNYYNRGRAEVTFKEGDLVLLSTKNLR
QLAVGPRKLLPRWVGPYPVKRMVGKAAAELVLPSDMRIHPTFHVTLLRPYKAPADALDSSTVRDSSSALSSPAGPPPVQW
LKSDPLYSVERILDYRARRLGRRRKGLVHEYLVKWTGYSNEHNSWEPEKNFTDLRPELQAVKARATKAARMLRPEGG
>Gypsy12_VC#LTR/Gypsy 1747-6325 via tfasty with Gypsy4_VC_pol, 2 frameshifts. Somehow Gypsy12_VC_gag is near-identical to Gypsy8_VC_gag [Volvox carteri]
SLFLEYDSQYGPFTVDAYCDDLGLTAQLSPFFSPSRPFLSTDIEGECVWMVPPVDNASTIVARYLDAKTANPKTSAIIVL
PDRPQASWAPLIRHMTIVRRFPAGAQIVCRPTSSDPSRYGEPGPSPWPVVVLHDPPSSAPFTLASTSATLLPDTTLHPVS
TSSHPSFASANHLSTSSTSSVKTLIQHFSSSHPPPPPQPSDRPPPPRSNVANLIARFSQTPTSAASSPPPPTPTVSQPAQ
PSFPLVQRPTPQPHRALQASLPQIDEQRSTVERPFIPPILGRIASVTDNLSTTLIVFDATIAGHPARVLLDSGASRNFIA
HSFLQHHQLHPANLPASQSFRVCLANGHLALCSSALPNTPLAIQSHHERTTFFTLDLDGYDAILGKPWLTTNNPQIDWRT
NTVTIGDTVIPHSSYCPSAFQIEFVSIARMQKCICQAAARPPPPNTTNPCKRAPFNPSPPVYMGVLRPIEDPEVDPEAPP
QPTASPSVPPALQPVLQRYATIFEEPSGLPPSRPCDHHIELVPDAQPPKQREYRMSPAELQELDKQLKNYLDCGWIRPST
SPFGAPILFARKPGGNGLRLCVDFRAINQLTVKNAYPLPRVDELLDQLHGAAYFTKLDLWSGYHQVRVHEPDVHKTAFRC
KYGLYEWLVLPFGLTGAPATFMSSAPSVNKCAVVYLDDVLIYSRTFEDHCRDMEAVLRTLQDHHLHVRFSKCSFAQPSTK
FCGFIVSRDGIMTDPDKLTALANFPIPSSITNVRAFLGFTGFYRRFIKDYARIALPLTTLTKTTQPFPKVLPADAVAAFQ
ALRDALMSAPALIIPDTGTNATFTLYTDASILGIGAVLLQERNSALHPVAFESRKLSRHEANYPIHELELLAVVHAVRKF
RCYLEGCHFTLCTDHDTLQRFFTQKDLSRRQARWAQLLAPFQGYITITYRPGPQNMADTLSRFPVSPAPNPEPSDPTPSL
PPTSAENLTSMTSPSPSPLWPSTSPPVDVAANHALHHACFTIAAHVVPDPSLADDIRFGYTADPMYSNSTSTKPYLQRSP
DGFFYFANHIAIPNVPSLRRRLLHEFHDAAYSGHPGFRCTLAAISTRYWLTWPGTVKAYVKSCPICQRTKPSTQPPPGLL
HPLPTPTQPWTHVSLDFITDLPPSKGLDGRTYTAILTFVDMFTKQAHFALTNKTTTAHDTALLFLTHIYRLHGLPTTLVS
DRDSRFMSDVWRTFWEHLGTSLNISSAYHPQTDGQTERTHRTIEQILRAYIQPMQDNWASYLPIAEAAYNNATHASTGMT
PFYANHGYHPRTPISLHGPQAASPSSHPQATELQQRMSDIHATINREIQAAKTRYAAAANQHRRAITFKVGDRVRLSTEH
LTLPTYPSPKLRPRYLGPFLISSVISPVAYRLHLPASLGRLHPVFHISRLLPWTDNDPALFPGRPPPPPAAPTALESPYD
SADTVVTAVRLGYNKRARPSVMFLVQWSASSKRDPSWEPYDDVHNLPALRAFLRSPSWTACRLSDRYAWFRAKFPEHAPR
IVQFLAE
>Gypsy15_CR_pol#LTR/Gypsy 1879-6081 [Chlamydomonas reinhardtii]
GVAQRCDCGQRVGTCCSVKFASLNVTHARDLCFVDDAALSLVEEKIGRPVTSDACSAAVRMCKSRMIGFAYARASAAHKS
LSGHTILLSPSVRKLQLCIARYRQYKAEDPSISAVMLMPALSDRHRSLLRGWNLKHTFAPGTQLFTPNCGGSCPSPVTTE
PWQVWYDPPKAEPKEPSCAVTEVPEGPAQLDLFAGRLSHAPVVVLADTGATHCFIAKALADRLGLSLRPSSLAPVRLADA
SKCDAVGECVVPLRLGTFSTEIRVHVLPSLTSSADLVLGQTFLKRFCVQMTPHLGTLHLLRPSGRTAVIRALNAPDPGDP
EPRELPPLEEGEPACQLLEQPPVSAKVVSAKRAIRAASMEGAKAVLTFVRALSPSATHAPAPELCTAEAPLQSMLNSAAP
PAPDPPLNLPPEVEQNPTLKTVLTEFRDVFAPISGLPPDRGVHHTIPLEPGSAPTHRPQFRLNPIELAEVDTQVKDLLAK
GLIRPSTSPYGAPILFVAKKTGELRMCIDYRALNRITVKNRYPLPRIDDTLDRLAGAKYFTALDLASGYHQLLIKPEDIP
KTAFTTPLGHFEWLVLPFGLTNAPATFQATMNRIFAPFLNRFVTVYLDDILIFSRTAEEHEQHLRQVLACLRKWKLHAKL
SKCEFWRSEVKYLGHIVSSDGIRMDPKKVEQIRQWPLPRDLSELRSFVGLANYFRRFIAGFASLAAPLTNMFSLARLPDT
WPPQALHAFEQIKERLSTDVLLRYPDFSKPFVVMSDASLNGTGAVLLQEDRPVAFTSKKFSPAERNYSTGEQELLGVVNA
LREWRCYLQSALPFTLYTDHHPLIYLKTQAHLSRRQARWVELLSEFHFDWVYRPGKLNVVADALSRHPSLSFLHAMQTRR
QAAAAASSPPVPSATPSAPRARATHAPAPVSSGPVATFTTRIAAAVRADTWFQDAANVRGLATSPDGLFLREEEGSWRIL
VPNDPDLKRDIIASCHSERLAGHQGRDRTTELVRRTFTWPTLTRDVADFVASCDACQRSKPASGKPAGKLQPLPIPELPW
ESVSMDFITGLPRTQRHNTAICVFVDRLTKMVHIAPCSHEINGQQTADLFFDSVVRLHGLPREIVSDRGTVFTGAFTTAL
TKRLGIKQSLSTAFHPQTDGQTERINRILNDMMRNFCDGNHANWDRYLSAAEFAINNAQNRSTGKSPFFLTYGVHPKTPL
TLDVGNSVPAAKHYTDNLMERLNAAKRCLQAAQDRARQDADRHRRAVTFTEGQMVLLSTKNFREYQGKHKKLMPRWVGPF
PIEKMINPVAARLTLPPGEEKHNVFHVSLLRPYRQPADATPVRVLPLPVTSNGTPTLRAERILDHETRKLRNREIHRYYV
KFVGRDMENNQWLDESDFPDRTLIDAYWASRQVASSVPST
>Gypsy15_CR_gag#LTR/Gypsy 341-1315 (fragment) [Chlamydomonas reinhardtii]
MDPTLGDAPSAAAGAAGLIPAGDAAAGSSGAAGTAGMDVDLPSLTTEQQGAAVSAAAAAVVAGAPVIAGVPAAADLPPTV
TIASTALVSLLTQVGQQVAQQVAATAAPAALPAPAEPAAPPAPVASAAPAGYAAAAAAPAAAAQPAAPVPAQVGLGGHSA
QMGGSSRNPQTLPTFSPTSDVDDFWFGFERYMRYERQLTPYDALLSACHSFADAFKFLRHNVLDGERLTLSELKDVFLRR
FDFRVTTKAEDARDDLQKGRVKMDLAKGVEEYAARFLERVTVAGFTPGLDLKHDFMLMPFFRDGLIDKLQSKCVLDGDRS
PLLV
>Gypsy63_DR_pol#LTR/Gypsy 1517-6136 [Danio rerio]
KSQESKPATHQNETIFGKLLRGSVKERPEAPGKTRSTKCKGVQAEPAVLPSGLVGPSSVLPVQVEGIYAKALLDSGSQVT
LLYRSFYDKYLRHMPLIPIENLEIWGLSMQKYPYDGCLSLRLEFPGSVAGVAESIDALVLVCPDPVMKGDVNILVGTNTS
VVKKLVEACKEKVGDDFLHTLTVHPEIRDAYERAIAVEKSHCDDSRGTVWYLNPKPLKLPPGESARVYGVLKCPSAFSGK
TLLVDKPEESVFPDELLVTAEVQANTVVQSRKIGVTIRNVSSRTVNLKRGMPIAHVFPVEVVSTSSKPQECSGQTKLDAS
SFNFGDSSVPNEWKQRLVKKMLERTDVFSCDEFEVGCSKSTQHRIRLTENKPFRERSRRLAPADLEDVRLHLEKLKGAGI
ITESRSPYASPIVVVRKKNGQIRMCVDYRTLNRRTIPDQYTVPRIEDALTCLNGSKWFSVLDLRSGYYQIPMSEADQEKT
AFICPVGFYQFQRMPQGICGAPSTFQRVMEKTVGDMNLLEVLVYLDDLIVFGRTLEEHEERLLKVLDRLQSEGLKLSLDK
CTFCQTSVSYVGHIVSQDGVSTDPSKIDAVKSWPRPQNVSELRSFLGFCGYYRRFVKDYSKVSYPLNQLLQGCLPAASLK
KIKAGLRPEQLAYKATDPFGSRWTDACETAFKELKVRLTEAPVLVFANPQLPYVLHVDACCEGLGGVLYQDQGEGLKPVA
FVSRSLTPSEKNYPVHKLEFLALKWAVVDKLHDYLYGVKFEVQTDNNPLTYVLTTAKLDAVGHRWLAALSAYDFSLKYRP
GRQNIDADALSRRSHQKEKEWTSIPSSGVRSLCKLPGQDKPNCFASVSRIVTSLGGSPKSIPKTYCNLATLDTLKIPKLS
SVDLSCAQQEDPCMGEIWRALKRGDLSTVNKEAHKDIRLIMRDWDKLVLDNGVMFRCTQVPERPCHKQLCLPKKFHKVVL
KSLHDDSGHMGFDKTYGFVRNRFYWPRMKVDVEKYCQTCARCVQRKTLPRKAAPLSHLSSNGPMDLVCMDFLSIEPDSKN
ICNVLVITDHYTRYAQAFPTKDQKATTVVKVLWEKYFIHYGLPKRMHSDQGRDFESKLIHELFDLLGVEKSRTTPYHPQG
DPQPERFNRTLLDMLGTLDSRQKQQWSRHIGHLVHVYNCSMNDATGYSPYFLMFGREARLPIDLSFGVSSDGTSVRSYQR
FVKKMQNELKSAYQLAEENAEKKNAGNKRRYDQRLHYSHLVPGDKVLIRNLGLQGKHKLADRWNSELYVVQSQMPNLPVF
RLKPQSGNGPVKILHRNHILPIRQQLRQRVSDKIPKAQERLLRQRKNVVESQSTEQGTNDASVVQEIEVRADQTVEESCE
SEDEEYGVWVPIPKDSQLPFSGNESLQSDSVVSENEVRDTVKPVDVKDKTPQGVRTDDSVETDSRLLVENDSENLQNLSQ
VSDLCDTVTSIVQDLESVDQSNENKTISDSLPEIKGRSQRMRTVPKRLTYDTLGMPTVEPVVVQAKVVNPVKYNSSVYLW
LHVPSRKISTCAVTLKKRQ
>Gypsy89_DR_gag#LTR/Gypsy 14-835 [Danio rerio]
MENRPAEEAAPVSNVDRILAALSEQATAIHQHDQTCEILSLLNPHSQTTMAQVITPQSVPLSTPEPKLPPPQRFDGSFEN
CRGFITQCTLIFQLQPSCFPTDCSKVAYIITLLTGKALDWASALWDKKSPVTTNLQLFLAEMKRVFLHSADSGEAGRRLL
RLSQGSRSAAEFAIEFRTLATESGWGQSALRAIFHNALSPKLKDELAFRDYPSDLESLIGLAIRVDNRLKEWQTEREQDT
IMTRHDNVVCPTLDPEEPMQLGATRISLSERTR
>Gypsy87_DR#LTR/Gypsy 1-1539 [Danio rerio]
LVAAVVGFFCWDTNFLILNEGSVATLTSRDVDTLSVYFFTCSFCLQVWITCVIFFFFFNKMADEELDAAAARGDRHLADA
ANTHLPFKIDFPHSFSGDGTEPFSSWIQRFEVALNVSAVPLDKAKLLPVKLIGPAFAYWQSLSSDVKADYALAKASLTTV
FGRTTFLATFQTFLNARPRKPQEPLEVYAAELTNLVTEAFPQYDAAARNCEIFRRFVTGLDPSLQLKIHEHGAVTLDNAL
KIATQCERAQLAISVANPSAVMPVVLNQQPPTNTVTANHITELASVIAELRTDLHALRQSHQRQMDERVDQLSHRISSLQ
DKRTSSTHSSHQSCAAVDYDITTRHRQPDLDDHHRNCCCTSQHTHGCRQHPQDDCCPAQRRRDYFEHEQAPPTDSFSRQR
RYSYSRSCESHPPYTTHYAEHTPHRPYVNARSGRSPSRERRSDYNPEYVTHYKRPTSHSPQYRHSSYRRHSSPSPPPQSH
KSSRYSSSPTRHVHFTESDSEKAPFSPHRGNE
>Gypsy95_DR#LTR/Gypsy 105-4098 via tfasty with Gypsy-28_NV, 1 frameshift and 1 stopcodon. [Danio rerio]
MQSMMNQTSIQPFDTETDPSSLGTWWNKWIQRFENFIIAMNITGDARKKALLLHLAGERVHDIYDTFAADEDEYTETKTK
LNNYFSPKKNTQFLVYQFRKAVQQHGEKLDTYQTRLRMLAKDCEFADVDCEIKAQLIQSCTSSRLRRKALREPDLTLEAL
LDHGRTLEISEQQAAGIEQNPVAAVSAVYHNYKQQSKFKATNKQISNIQCRNCGGQYPHQGVCPARGKECRACGKLNHYA
KVCRSNTTKHPQQRKYNDRLQYKRNSNPQTSKQVAATCVSNTQDDSSSSEDAYVFVLNSNTCQQQPQTEIKINGTRVRAL
IDSGAAVNIISKAEFDTLAPKPQIRPATIKIFAYGSDTALPIIGVFQCDVKASHSATEAKFYVLQNDGHTLLSYGTAQEL
GLINISSSVNHTSTIRTVADELIENHPDLFKGIGKLKNFQVKLHINPDVQPTCQPHRRVPFHIRQKVEAELQQLTNNDII
EIVTGPTPWVSPIVTPPKPKDPDxVRICVDMRQANIAIQRERHITPTIDDVIQELNGAKVFSKLDLRAGYHQLELHPDSR
YITTFTTHLGLRRYKRLNFGISSAAEVFQNAIAQTLQGIKGVKNLSDDIIFYGASQRAHDEALQAVFQRLQDMGLTLNRE
KCEFNKNRLEFYGFIFSDSGISADPKKVAAILQASEPKDQGEIRSLLGMANYCSRFIQDFSTICAPLRDLTKKDTPWQWG
EMHKQALQQLKDALARATTVSYFAPLKDTELVVDASPVGLGAILSQTQNGQKNVIAYASRALSDTEKRYSQTEREALAIV
WSCEHFHLYIYGHPFTLVTDHKPLELIWNNPRSKPPARIERWGLRLQPYQFRIEYRKGIDNPADFMSRHPVPLDVECNTR
ASKVAEEYVNFMALQSTPKAMMIDEIKTETKKDAVLQQVCSCIRNNSWHINTRDSLFADTLKQYRNVSSELTVSPNDDLI
LRGSRIVIPSTLEQRVLDLAHESHQGVAKTKSLLREKIWFPNIDRKVEVITTNCIACQANTPITHVEPLQMSEMPEAPWH
NLSADFYGPLPSGEYLLVVIDDYTRYPVVKILHSTSATTVIPAIDDVFSMFGIPKVLKTDNGPSFNSNMFAQFAVYSGFH
HRKITPFWPQANATAERFMRTLGKAIRIAHTRGLPWKQQLNVFLREYRSTPHCTTGTSPAELLFQRKMRTKIPIATSSII
SVDDVVRKRDKSAKDKMKALADTRKHATHINIKPGDTVLCRQQKQNKLTTPYSTKPLTVTRVKGTMVTAERQGHSITRNC
SFFKRLNQEMPELLFEPGHGDETEENVTHTVPPKYPFRHNRRPPAYLSDYV
>Gypsy122_DR#LTR/Gypsy 2-4524 [Danio rerio]
MVSEVGCRVWFRTQASLFAPRGSFFFPPPPPPLFIMSRVTKKKNPSLHQGEDNDEEEVQVVVEEAVGGKPAEVTEVSVAE
LASLLRAHMARTECREMDRQREYVDQERRFKALQHQFSLLQMEVQARTSPTTHLLDDDQEASGWSDANPLNADGLPVTQV
RQNNSDQTVDNIVLPPSLVPRLEKLNETDDVEHFLVTFERIAVACRWNRSDWVWHLIPLLTGKARAAYVNMEVTESADYD
KVKSAILKKYDINVETYRQRFRSLAVNPSESPKELYSRLKELFTKWIQPKGKTVEEVSEAIILEQYLRMLSPELQVWIRE
RDPGSASEAASWADVFVAARGRSKPWTFKSGGENRSISMGQGRQKTEGQGKPYFGKAPGNLSLTSRRPPICHMCGQEGHI
KPNCPKNSVQSMHLCFVPKRNPIPADSTALRMTVVETDGKLLSALIDTGSDQTLMDRRFVPPALIDQRNQLPIRCVHGDE
RLLPTASISMKVKGQAYVLKVGVSDSLPFPIILGRDLPVLFELLHPAQECNMVVTRSMAKPNEEHVHTLSTLPFFETEIE
TGVAKRRKTRREKIREKVKHNAFKPSVSCHLPVNFQLPTNIIQMQQSDISLKECLSRSVDAEEEKPEDDKTVTFVRIKGI
LYRQIGPRRQLVVPQCVREVVLHLSHSVPWAGHLGKNKTIARIKRYFYWPGLEGDVAQFCKSCPVCQKVSLQRPRKAPLQ
PLPIITTPFERLGMDVVGPLEKSRSGNRFMLVITDYATRYPEVFPLRSVKAKSVATSLVQLFSRVGFPMEILTDQGTNFM
STLLKQVYRLLGIKSIRTTPYHPQTDGLTERFNQTLKQMLRKFVTETGQDWDQWLPYLLFAYREVPQSSTGFSPFELLYG
RDVRGPLALLKEVWKDSPDQKEPNNVVSYVLQMRERFEKMASLAQTNLTKAKEQQRLWYDPAARERNLQVGQKVLVMLPN
EESKLLAKWQGPFDVKRKLSPTTYEIFTPGQARASRVLHVNLLKEWTPRAKGELRSLMVCRVGEEESDEQYLPEPNVGDL
ELDHLSEAQQSQVRAVCTSDVFSEFPGFTKLIQHDIVLKPEAVVRRRSYRVPERLQEKLKEEVEMMLHLGIIEPSHSEWC
HPVVLVPKKDGSIRFCIDFRYLNSVSKFDSYPTPRISDLIDRLGQAQYITTMDLSKGYWQISLTLSSRPLTAFRTPWGLF
HFKVLPFGLHGAGATFQRLMDKVLHGLTFAAAYIDDIVVYSNTWDEHVQNLQEVMRRLQSAGLTVNPKKCAVAKRETEYL
GYVIGQGMVRPQIGKIQALEKCPVPQTRKDLRSFLGMAGFYHRFIPNFSSRAATLTDMVGTRCPNQLQWTEDKLKAFRDI
QGALTTNAVLYNPDFNLPFVVQTDASERGLGAVLLQGMPEARRPVAFISRKLFPREMRYSTIEKECLAVKWALDSLRYYL
LGGEFVLETDHKALQWLEKMKDTNGRITRWYLAMQPFSFKVQHVPGKTNVTADYLSRCSSEVLEEGE
>Gypsy117_DR_pol#LTR/Gypsy 1518-6230 [Danio rerio]
MLIMPRNWTSTKAVSQSCQPSWTSCFGFICSGKLMHSHFGGDYVSVQHHTLAMDDNFSVYDECRKSASSDIVFFQNITKL
EKSDSLFYTPVLLNDKVSVQALLDSGSMACTINGETERKLLSEGMPAQVDQSYMDILLVGCGGVKVKPSGVYQLKMDVYG
KQLSVPTLVVPDQKDQLILGTNVIKFLLTQLKQDSNYWNVVNHPVLSGEPEIEQFLNMLSGINRWEGNKIPDIVGTAKLT
QAVTLLPKQEHLVWGKLPQTAPVSLGSAIMIEPTKTLTHKKSVMVGRVIASMSGDRWVPVKIINLLDKPITLKRNSKIAD
VFPVVAVEDLCVPNDHDDEMVSVHCQKTVGDIVDEEDRPVSKFHESMQKLNLGDLDIDSCEVSTYWKNELVQLIKRHEEV
FSKHKLDCGKAKEFVHRIHLSDDRPFRLPYRRVPPAQYLKLRTVLSEMEEQEIIRKSYSEWASPLVLVWKKTGDLRVCVD
YRWLNTRTVKDAHPLPHQADCLAALGGNAIFSAMDLTSGFYNIVVSEEDRKFTAFTTPMGLFEFNRLPQGLCNSPASFMR
LMTNIFGDQNFLTLLCYLDDLLVYAPNEEEAIKRLELVFTRLKAHGLKLAPKKCHLLRRSVKFLGHIIDETGVATDPDKV
SAISAVSEADLMMSDGVTPSQKKIKSFLGMVMYYQKFIPNCSSVAKPLFNLTAAPKGRKTSQKGEINFKKLNPGDWTSEH
SEAFQNLKSSLLHSVVLAHPDFSRPFILCTDASLDGLGAVLSQVPEGENKARPIAFASKALTKAQTKYPAHRLEFLALKW
SVCDKFSHWLKGHDFTVWTDNNPLTYILTKPKLDACEQRWVSKLAPYSFNIQYIPGSKNVVADALSRQPFVHQRVGQRLI
SEPYSVLLNEAEKVKEDTVQDAFRLSANICTVEHLACRPLEHCSLTCTEVSAVLDVHTQWETGASDRAIQWLSQGTHQLL
TPGPSPLPVFSLSELRQKQQDDKILSRVLFYVSRAKKPSRRERAGETFEVLKTLKQWEKLKMLDGVLYRVTKDALTGKKR
WQYVVPASLVSQALLGIHNEAGHQGQGRTLSLARQRFFWTSLEHDVREHVKCCKRCVVSKTPEPEGRAPLESIKTSCPLE
LVCIDFWSAEDCSGRSVDVLVITDHFTKMACAFPCKSQSSKQVARILWDKFFCIYGFPERIHSDQGANFESQLIRELLEV
AGVKKSRTTAYHPMGNGHVERFNRTLGSMIRSLPPRNKQKWPQMLQTLTFAYNCTAHESTGYAPFYLMYGRIPKLPVDVM
FSSIERDCAIADYDTYVKRLRDDLKEALSLAQMNSEASQKRQADLYNKKTKGCRIEVGDQVLLANKGERGRRKLADKWDS
TPYVVVDLNPQCHTYRIRNTHNGLEKTVHRNLLLQANFLPIETEGVEPSFSDDCELDDCSSALSGALTPSSACSHADRTA
SWVAETLVPDDVPDSVPIDTESVLSLVVNPEASRTCLSIVQSDTLSCEDVMVHSEVTKTHSETDSLVSNRALTRGANTSE
SVVLSSSRVTLPVRTRVGRLVKPVNRLIQNMTQNVRMTSSVSEFAKSLLS
>Gypsy83_DR_gag#LTR/Gypsy 403-1839 [Danio rerio]
MAEKFPSDFDATSPFVPRGRGALLTGVYNDVTLRNESFPGTEHVQTVRDNTIGVGRGHSLRNQTVGHFPGHGPFVSTPKA
DNTDQTLQQITDMMGRLGAQIGDSIMARLAETGVVNSNCALHNSKDPDVDSVRQDVPQVTVHVKAEREPVMFKGDGSDKY
SVRDWIDLTKSQLIKQKCPISDQADEIMSRLMGKARDIVKIGLRSDTSLNAARNPDIIYSILQRYFSDAASCLPLADFYS
TYPEPRENPVDYWIRLNKSADLAEEGLRRQGRFMDDISMEVTRMFVKHCPDPELLCLFKCKPIDEWNARDIQRRLDDYQR
EKRTPLSNLNPRPRYTVASIHCTDPQKTTDYCQSNIQTDLSNVPPAVPSSLSEAQCIEPVIYTKQNVQKPDSEIFSRMMS
MLEQVLEKVAQNSRVPSPQNVVYRQGSVQCDVCKANTHTTKTHCFRDRLCFSCFSPGHSQNVCPRRVSARRNQSGGNL
>Gypsy69_AG_gag#LTR/Gypsy 201-1256 [Anopheles genus]
MQNRENTTLSSSMNTLSAVSINIPECKPITNTEEIDRKSFKDWKDLLEASMDLAGITDEYTKNNVFKVKAGPMLLEVLDS
TPKQPLSETSNAPYSNAMKRLNDFFGSREYRLVQRQKLRALTQDAEESDLKYLKRVIATAKLCDFDEEKLMEGVTEVIQL
HALNAKVREAGRKVLRKGGTLAALVDKIRGYEVDKTNEEIFKRTHQPASDFRIAAVARSGVESNSAAGSGTEPRGRNFDY
QGQSSWRNFGNPSNKYGRNNSRYENKVVPCWRCSSIFHVPSKCHAANKICRNCKKTGHIERACRQIPTPSNTLKRRISRD
DERPVNTKKIATVTKDEEQKEDTNVVSDYSS
>Gypsy64_AG#LTR/Gypsy 74-4348 [Anopheles genus]
MEGAQEKDSAAGGGESSKNVSEAILKILANQQSLMSSMAQQLQLTNQSIQKFTHVEVVLDSLSSNMSEFVYDKENGYTFD
AWYSRYSELFDRDACNLDNAGKVRLLLRKLSPQDHERYNSFILPKLAREFTFEQTVKKLKSLFGATISTFRRRYNCLQMT
KDDVDDYLSYSCKVNKSCVDFKLSELTEEQFKCLIYVCGLKSSSDAEIRMRLINKLNEAQDITLQQIVEQCNSLVNLKQD
TVLVEQPSSVQYVANKGSSQQQRHPSGGNKQQDHPRTPCWSCGAMHFHKDCPSRNHKCKDCGKIGHSEGYCACFTSMATT
SAPAQKAPWKKQYKRKQHQGQTSKIVTVNHVTQRRKFVSVHLNNIPHRLQIDTGSDITIISHQAWKRIGSPAVKPATCNA
RTASGDPLQLAAELECSITINNVTKQGKCFVTDPNVNLNVLGIDMMDLFGLWNEPITAFCNQICTTKTTNIAELRSRYPD
VFNDKMGLYNKTAVQLTLKGTPTPVFRAKRPVAYMMEAVVEDELHRLESLGIIKKVDFSDWAAPIVVVRKPNGTVRICAD
FSTGLNNVLESNNYPLPLPEDIFVKMANCVIFSHIDLSDAYLQVPVDEASQPFLTINTHKGLFQFTRLSPGIKSAPGAFQ
KLMDTMLAGLNSTTGYLDDILVGGRNEDEHQQNLHLVLNRLRDYGFTVRIEKCNFNMRQVKYLGQILDAQGIRPDPDKIA
PIVSMPPPHDIPTLRSYLGAINYYGKYVQEMRTLRQPMDQLLKAGMKFHWSTACQRSFDRFREILQSPLLLTHYNPKMEI
IVSADASNVGLGARIAHKFPDGSIKAIYHVSRSLTSAESNYSQIEKEALALIFAVTRFHRMIYGRRFILETDHKPLLAIF
GAKKGIPTYTANRLQRWALTLLLYDFSINYISTDSFGHADVLSRLINRHVRPDEEMVIANLTFEKSIRSILNESLQAVPL
SFKTIQNTTKNDDTLQQIIKFIKEGWPPKTIINDPKILQFYQRRDGLSVVADCIMYGERLVVPPSSRESVLKQLHKGHPG
IERMRSIARQYVYWPNVDEDVAHIVKSCIECSSVAKTDRKTTLESWPVPEKAWQRLHLDYAGPVNGYYYLILVDAYSKWP
EVMRTKDITTTATLRMLRNIFARHGQPETLVTDNGTQFTSNMFETFCEHYSIVHLKTAPFHPQSNGLAERFVDTFKRALK
KITAGGETLEEAIDTFLLCYRSTPCRSSPEGKSPAEHIYKRPIRTALELLRPPSSSHKVHDNKQEKQFNLKHGAKKRHYS
PQDLVWAKVYHNNKWSWAHGQVIEQIGSVLYNVWLSSTRKLIRSHCNQLRSRHEAEVSQQEQLATTDVQIPLAILLDNCG
LNDEVERETTTSTTLPSEMLADLAPPRQRSRVGSTRNNNQPPVPTRQSSRQRVPPTRYDAYHLY
>Gypsy71_DR_gag#LTR/Gypsy 343-1692 [Danio rerio]
MSYTYAADDVEDDVYIGGGRGRFFRDIVHAPGAMGFVDSPVVSSTRIKTDCQVPRSDTPSTDLSHLITQLAHEIGQSISA
QLCKGNEKGDKVSNNSNVGLETPSAESHSLNMTGVKLVMHSDVKEPPSFRGDGTDKLSIHEWEEQIDVYLRKRGVPKGEQ
AQEMISRLGGRARDVIKVTLRSNSSLKPDEDPKVVIDILKQHFSELTYSAMPLADFYNTLPAVGENAMDYWIRLNKAVDV
AEHCLKRQGRNLEDPSKEVTMMFVKHCPDPALSAVLKFKTADKWKACEIQEHLDDHHTQLKIRQQQAKSRRPGVERYATA
NVQATVIDESVQVGASTRLQNQTEMVGDVRTVSDTTSLQNLITQLDQMLKQNNQAAIRTPYMSGGYRSVRKPCRVCKATD
HSTTMHCRREGLCMSCCMPGHWKRDCPKARYGASVPNLNMSQEQQQLLN
>Gypsy74_DR_pol#LTR/Gypsy 1714-6332 via tfasty with Gypsy-16_DR_pol, 1 frameshift and 1 stopcodon. [Danio rerio]
MFIYSNHCQVESGGRIILFQNIAKVEKADSLFYTDVLINDAVTCRGLLDSGSMACTINEETECRLLDVCGILEPNDQHTN
ILLVGCGGVQVRPKCIYQLKMVVYGHSVSVPTLVVPGQKDQLIVGTNVNKYVLSEIKKSQSYWRVMSQSDSSGEPEIHRF
LSMLSGHDRWEGGSIPSVVGTVKLTRAVTLLPQQEHLVWGKLPTSSTISVGSTVLIEPSSTQTRSKAVLIGRSLATLPGD
RWLPVKVINTSDKLVTLRRNAKIADVFPILAVEDLDFQDGQDHAKTVSAQSQSLISSTVVGGSSLQGIRNELQELGLSDL
DIESCEVSPHWKEQLLQLVGRYQDVFSKHKLDCGNAKEFVHKIHLSDARPFRLPYRRVPPAQYQKLRMVLSEMEEQEIIR
KSCSEWASPLFLVWKKSGDLRVCVDYRWLNARTVKDAHPLPHQADCLAALGGNAVFSAMDLTSGFYNIAMAEEDKKFTAF
TTPMGLYEFNRLPQGLCNSPASFMRLMMNIFGDQNFLSLLCYLDDLLVYAPDEGEAIKRLEMVFGRLRGHGLKLAPKKCH
FLRRSVRFLGHVIDSSGVATDPDKVSAIGAVMESDLMMEDGVTPSQRKIKSFLGMVLYYQRFIQDCSAIAKPLFALTAAP
RGKKSPGKGVAAFKKLSPDDWKEEHSRAFQQLKAALISSVILTHPDFSRPFILSTDASTDGLGAVLSQVAEGETKARPIA
FASKSLTRAQAKYPAHRLEFLALKWSICDKFSHWLKGQEFVVWTDNNPLTYILTKPRLDACEQRWVSKLAPYQFSIKYIP
GSKNVVADALSRQPFVQHRVSQRLLNEPYNVLLEEAEQLKEGTVQDVFRFGVDTQGTEGSLMLNACSLSSAEVSAVLDGH
TDWEVGVQARPISWIAHGAHQLLPPGQCPIPVLSLDELRDRQQSDPCLSRVLFYVNRGRRVTRRERSGETRKVLRVLKQW
DRLRMLDDVLYRVSKNNLTGKKQLQYVVPSSLIAQVMEGVHDEAGHQGQIRTMHLARQRFFWVGMEHDVRKYVKCCKRCV
VSKTLDPDGQAPLESVKTSSPMELVCIDFWCAEGSRGQSLDVLVVTDNFSRMSHAFLCRDQSAKQVAKQLWDRYFCVYGF
PDRIHSDQGANFESNLIRELLLVAGVKKSRTTAYHPMGNSSVERFNRTLGNMIRALPARSKERWSQLIPTLTFAYNCTAH
ESTGYAPFYLMFGRIPKLAVDVMFSNVERDCEVVDIDKYVKRLKDDLKLAITAAQKNVDVSQRTSDLYNQRMKGCVIELG
DQVLLANKGERGKRKLADRWESTPYRVVALNPQCHIYHIRNTRKGLEKTVHRNLLLQANFLPLELEDSALSGGSDGSVLG
SRSVSVDDVAGLELELCSVSERVASWVEKTAVSEGSPQEFLSGSGDAVLTRLSEMLEQAQTPSEADYIEEICGASSDNLS
RGSCSRCSEIVLRDDCTPSAGVVPPSDQVTIGVRTRVGRVVKPVNRLIENMTQSLKTLNTVGGVVKSLLKxKYIELHYLL
ESQNIRVDASLNIGCPRFKL
>Gypsy72_DR_pol#LTR/Gypsy 819-4297 [Danio rerio]
AHGFGSLPPDRQGETATPGGRPLPLLWWAGPSSSFLSIKSHRSSVAGGVLASGTSTSPAQGSRTQLFVSVIVNNVSFKGT
ALIDSGAEGNFIDENWARSRGINILPLKSPVTALALDGRPIATITSVTNWVSVVTSGNHREELSFLVYKSPTTPIVFGHP
WLSRHGPCINWADNSVSSWSLYCHAHCLLSAPSPVSLCLSSQEEETDLSCVPDTYHDLRGVFSRSRAVSLPPHRPYDCAI
DLLQGTSPPRGRLFSLSAPERAAMDKYLTESLAAGIIRHSSSPAGAGFFFVKKKDGSLRPCINYRGLNDITIKNRYPLPL
MSSAFDLLQGARFFTKLDLRNAYHLVRMREGDEWKTAFNTPTGHFEYLVLPFGLTNAPAVFQALVNDVLRDMINQFVFVY
LDDILIFSSAMQEHVQHVRRVLQRLLENQLYVKAEKCKFHVQSVSFLGHIISVEGLRMDPAKVRAVSDWPPPDFRKALQR
FLGFANFYRRFIRNFGRVAAPLTALTSTRIRFGWSVAAQTAFDHLKSLFTSAPILITPDPARQFVVEVDASEVGVGAVLS
QTAQDNKLHPCAYFSHCLSPTERNYDVGNRELLAVRLALGEWRHWLEGAAVPFLVWTDHRNLQYIQTAKRLNARQARWAL
FFGRFNFTLSYRPGSKNSKPDALSRCFGSPADPSPPDTIIPSRCVVGAISWGIEERVKRAQAGVEVSSGCPAGMLFVPDA
VRTAVLRWGHCSKISCHPGVRRSLAVIRQRFWWPAMAGDVRRFVGACSVCAQNKSSNSPSIGLLQPLPIPSRPWSHIAMD
FVVGLPPSNGNTVVLTVVDRFSKAVHFIPLPKLPSARETAREVVDPVFRIHGLPEDVVSDRGPQFVSHFWREFCRQIGSS
TSLSSGFHPQTNGQTERANQDLGRMLRCLASHNPSSWSQQLTWAEYAHNSLPVSSTGLSPFMCCLGYQPPLFPSQGSEAA
VPSVQAYIDRCRRTWTRAREALLRARGRTKAAADRHRRQAPRYVCGQRVWLSTKDLPLKVSAGKLAPKFIGPYPISKIMS
PVTVRLRLPLHLCRVHPVFHVSKIKPVLCSPHSPHVSSPVPPPPLVIYNIPAFRVKRILQARRRGRGFQYLVDWEGYGPE
ERSWVPARDILDPSLIEEFHLRQSLSISGTPSGVPGGRG
>Gypsy1-SM_gag#LTR/Gypsy 216-1741 via tfasty with GYPSM1_gag, 1 frameshift and 2 stopcodons.  [Schmidtea mediterranea]
MNNNRNNNNFIKMLPIEPYKGEPEKIDDFFTEITQYADACGWTPDELKKRIPLYLKGYALQAYNHLECRGNNLDQLIENL
RAEIVIDSDLQKINVxKFRNRNQGSRESVGEYVYTITELAKKAFGAGEHTPKLIEDQFWNGIQKYLYRALIMVEYRDLNE
LVQKAKRVEAIQRDRFNASIDAVEIQKPTIAKPKLEKDYDVPWEEMKQLYLNFVKNRRKNSPNSSRSQSPENRKRFNALN
LTEQNQKRFRDDNRDSRSDYNRNNSYRNNRYFNRDSRSDYNRNSFRDNRYNKNSGDSYSGNNRDNRSEYRQYNRNSSRGR
QSSPYRQNKYRETRASPYNDDGRDKVNFNGQIKCYNCQRYGHLAKVCTNQRSESPNQSKIxSEPEVKQINGVEFYNTSNE
INTLREELKEFKTQYGRLMERKSEALLNGYECSINEVDIDNEETERQIKMKEELKEVLKKRPYDDNETLRVINKVQVNRI
DPEYLTRLIPLLVKRQTETRVFEIEIELK
>Gyp_MD_pol#LTR/Gypsy 19-4067 via tfasty with Gypsy12_DR_pol, 1 frameshift [Metatheria]
DKSKVEDXRTSFGKRRWGRGRRSPRXPXTXTLTSSAVPYGSFPPGLIGPREEVTVKIENVXCAAVLDSGXQVTIVFQSFY
ERYLKKIPLQPPEGLGLGGLSDKDYPYLGYIEVSLKFPKEVAGVNRKVDTLALVCPDPXXIYGVSALIGTNSSLFKILAG
YCKQQAGTQYLXALTIHAACAEAYRRXEAXXDSEHRRSXDXSXSEVDPEKFDFGDSPVPEEWKDRLRQKLSKRTGMFSLH
EWDVGCARGATHKIQLTDSRPFREXSRKIPLSVMEDLRNHLKEXLVNGIITESXSPYASPVVVVPKKNGKIRMCVDYRTL
NKRTKVDQYTMPRVQDALDCLLGSQWFSVLDLRSGYYQIPMAEEDKEKTAFICPAGFYQFERMPQGISGAPATFQXLMEK
VVGDTNYLEVLVYLDDVIVFGKTLEEHEERLMKALDWLEEAGLKLSIDKRQFCRASVKYVGHXVSQQGVSTDPEKIEALL
NWPRPXNLRDLRTFLGFGGYYRKFVKNYAAIAKPLNDLTRXYTIEENQKQKGKKSXXVLKPXKPFGDRWTDKCEQAFKDL
VNCLTHAPVLAYADPSKPFVLHTDASLEGLGAVLYQESDGHQKPIAFASRGLXDSETRYPXHKLEFLALKWAVTEKFKDY
VYGAKFQVWTDNNPLTYILTSAKLDAACQRWVAALANYEFSXHYXPGKTNVDADALSRRPRDTEAMVIPKEGMKAXCDTQ
GAGLQSDGSTAESLGLPPDSMPTAYVNLVSLNQSSLPRLSXDDWQREQMADEGLREVIQAKKRGNDXKGLKFHSPEGTLL
LRQWQKLELCNGVLYRTVTDPTHGTRKQLVLPXAYRSMATKALHDDFGHMGQERTLELVRNRFYWPKMAADVTKKCETCA
RCVQRKVLPTRAAYLENISTSKPLELVCIDFLSLEGDXKNISHILVVTDHFTRYAQAYPTRNQKASTVAKVLWEKYFSVY
GFPARIHSDQGRDFESKLLKEMLALAGIEKSRTIPYHPQGDPQPERFNRTLLNMLGTLRPEQKSQWSQHVAFLVHAYNXT
RNDATGFTPYLLMFGREPRLPIDLCFGVSEDGXDAXTHNQYVSRLRXXLKEAYRLATASAQKSSXRNKRRYDARVRCQXL
QQGDRVLLRNLGVQGTHKXADRWKAIPYQVVERPGNLPVYKIAPENGGGPAKTIHRNHLLPXGELVGLPDEQEGNDGXSA
KRTPXKRXRLPVVQRLSXPDNGSETGCSSEGXPVSENPKSXSNXRXKXRTQRRXLSCLKHSATETPRVQIQSTEREXTDS
QPGPSTSSGLGXQXYSYEDHYDQPIPSTSSGXGAERSAGRRRARXIRPVTRLTYDVTGETGEMVTHVARR
>Gypsy1_AG_gag#LTR/Gypsy 67-822 [Anopheles genus]
MSTENVSNEETSPATAAVSVKLPEFWKNDPSLWFSQAEIQFLLAGVHKDETKFYHIVAKLEQSVLCHIADYVKQPPATGK
YEAVKQRLISRFELTEQAKMDQLLGSYDFGDLRPTHLLTKMQELAAGLNVNDSLLKRLFLQKLPANIRAILSIHDGSLSK
LAEMADKMIEMAPQTSVIHASVQKETTENLAEEVAAMKVELRQMKARQPERGRLRSTSQNRSNENICWYHRKYGNRATRC
RSPCQYHQSKN
>Gypsy2_AO_gag#LTR/Gypsy 32-1165  [Aspergillus oryzae]
MVSTRSSSALPPVDPQGADGTATQSSATQGVSQREFPAAQNARTSDVPMEPIVEEDESETPERGPTSERQSEEPMLSLSA
IARVAEVLKTIMQTSSADNGFGGLKLAAPTPFEGKTIREVQNYIADMEDHFAASASAQRNDKDKVLYATSYLGEKAKQAW
RLKRESLGEPSWEEMKDFLYTFVDPEADRHRNVAYRLINEKQNGRNMREWCARSLEVWQAFPNNSLTAQTWIQTLDQEVQ
REITRAARQPQTLGEAHDMAIQYWSMLHRERSLRDSEGSGRKRADGGNQGPAGFNRGRKRPRENETPATRPRGSRSSPGQ
PPFKARRWNDGTQAAHERKRDWQKKEGRCFRCNEMGHRIWECPKAADGAPGKDASREQ
>Gypsy1_OS_gag#LTR/Gypsy 330-3902 [Oryza sativa]
MAIFKDKLDVIFKDKFDEFLRIKFGSLMDDYTLKDKASTTANQPPIDQTGSKTDGAAFTAGPTGPEAGQTRPVGPTGQTA
GQTGYYPGGQTGSQAGPTAHLDAGQTGPWAGQTGAIVPIQGIDPMTNASYLYQFRTFDPPVSTATTSPQVPPHVPNAYND
VSRGYPPDTRQGQYNHIAPQTQPIRPPNPPPNQQGPNNMEDIISDIIRNKFGIETRNRARAYKKPYPDYYDNVPFPRNYR
VPEFAKFSGEDGKTTWEHVGQFLAQCGEANSDTFKLRLFSLSLSGNAFTWFTSLPANSIHTWAQLEEKFHDYFYTGETEL
RLCDLTSVKQKYNESVIDYIKRFRDVRNRCYTLNITDRDLAGLAFNGLVAPLRERLDGQQFLDVSQLMQRALAQESRVKD
NKKFARPFDKKPNVNVVDYPEASDSEDEGDHDIYVAEWSWTNKNKPFVCSNLMPTPRKDRQSEVKYSFDVAKCDKIFDYL
LQEKQIRLPKGHVIPSQEELKRRAYCKWHDSHSHSTNDCNVFRRQVQSAIDEGRLKFTDGSKMKLDHDPFPVNTINFNDK
KVLIRPEQAESTKGKEVVIGEPRPKMIVPKKPEVGVWKENKSGASTSKAPRKTKVTFDMLLEKYEKQGGEKVRNKGKRPR
SPPRERFGHSPRRSHSPSYHHPQDMSWGPYPMPPPGYPYPYFMPWGATPPMFNHMPPMQFNQGWGGPRRPIHERLSSPNN
SRFYGKNRANEEKREGKRVKVEERTSEVITIKVGSHDVPIPSGDGVGESPSKKSEAGTSSSQSAGLTRPSGRSDRGHAAG
LTGPSGRSDRRPDXGPTDASGRSDRAPNVGLTGASGRSDRWSTAGLTGLQRRFDRRIAKGDVRASSSSNKVNRGHYLPPG
TEPNPRWMPKDLTATQKRRLQRLRAQELREKKAEEQRDKRFNELRPPPVWRPKSIEKEKPIDVEEKEEQSVDKGESSPKE
DMDINMVCMLPMEFCAMDEAEVAQFSLGPKDAVFEKPDESNRHMKPLYLKGHVDGKPVSRMLVDGGAAVNLMPYSLFKKL
GREDDELKKTNMILNGFNGEPTEAKGIFSAELTVGNKTLPTAFFIVDVQGNYNVILGRCWIHANCCVPSTLHQCLIQWDG
DDVEIVQADTSAEVAMADATFEWRHGNIQCLSGRDLSSYDFISISDGKFVPISVKPASVARLSHINLYNE
>GTWIN_gag#LTR/Gypsy 486-1862 [Drosophila fruit fly genus]
MSWTAYRDIKVERNSDGEFDLEPVGFCPNTTNSTAAMDAAQLQAIIAGAVNQALTEQENRLKRDFQAQLDEVKQQMQHLR
VEAPQVETYQKITAGPEVRCDIKLDIVKTMPDFSGEQDDYVSWRQSAVDAYEIFKRYNGSEAHYQAVSIIRNKIRGPARG
LLVAHNTVLNFDAIIARLDCTYADKTSLRVLRQGLDTVRQGELSLMQYYDDVEKRLTLITNKIVMTHEPDSAILFNNEVR
EDALHAFIAGLRKPLRAIVLPAQPKDLPSALALARESEATIERTNFAATYAKALEDKAITYEHRKDRNHSREPHGRYSRA
EDSQGKNPHFYKKQGRQNNSAQNNNSYRNQSPEPMELGSTVTQHRQPTSFGSGQPASVKAEGARGQKRFGSARMTGQRRQ
RVQNTIQQADDKNDSEYEGAAAAAVTEIDDESDENDQINFLGSAPDCRSLNASSMGGN
>CIRCE_pol#LTR/Gypsy 605-3269 via tfasty with Ulysses_pol, 7 frameshifts and 5 stopcodons.  [Drosophila fruit fly genus]
PYHLQVLEYENRKLQIFRENSLHNRKHRSSRRIRKFWIRKRSFNRFTISSIVQNKNDIRPFTHIDIFGQSHLALVDSGAN
KSVIGGELAQQLISSKPFNKFKSVVRTADGQTQNVAGTIQIPKTQRRFYCVRLSDSQKSKFQKVIDFFPSFGNEGLGLTN
NAKPIKQRFYPLSPAKEKLLCIEIDRTIKMDVIKEAPSSPWSSPVTLHIKPGKVRFCLNARKLNAVTAGLLSRQIxPQRC
LDQEFRAKTAFTVPNRPLYQFKRMPFGLCNPQTMCRLMHLVIPYQLKSHVLVYLEDLLVLSNNFEDHLLHLSEVRKAGLT
INVQKSQFCLKTVDYLGYLVGEGTLQVNPNKIAAVGDFPVPKTxKQLRRFLGMTGWYQRLISNYSTVIFNLTELLRGKSF
SWNDVAxEAFDNIKDKLCSAPCLIHPGEFRCERPIAFMSKNKAQRNYTVTELECMAVVLAIKKFRMYIDGHSFKVVTDHS
SLRWLMNQSDLSGRLARWAIKLQGYSFEIEHCKGTENVVADALSRSVRGCxRYCRSRPLKSIPNxLSSVHSSEKYSALRD
KLVSQKLPDFQVSDDYIYHRATFPNCTDVSPDDCWKLLVPESLRHSVMSSAHDQPTSAHCGMAKCLERIRRRFYWPNMVI
NVRDYIRNCETCQTTKYLNRSKKPPMAAQVQSDTIFQRLYLVFFGPFPRSKSGNIGILIILDNFSKFTFLKFNTKVIISI
LRDEIFACFGVPETVVSDNGTQFKSRDFSDFLSKYGVLHIFTGAYAPQSNGAERVNRSINAALRAYIRSDHRELDVFLSS
INCSLRNSIHQSIGISPYQVVFGKHMISHGNDYKLLRKLNLLTEGDVKLSRTDEFQRIRSNIARHLNKAYETNQKSYNLR
ARPRSSIF
>CINFUL2_ZM_p2#LTR/Gypsy #ReverseORF 7799-6832 via tfasty with ZEON1_ZM_p2, 1 frameshift and 3 stopcodons. Trimmed 10 AA to first M. [Zea mays]
MVMIKKLGYFGEVESKLVRFAGEEVVPQPREAxIVVFKSFFRAGLxFPFREMIGEVLKNFEIYFHQLTPNAIVTQVYIWA
LRSQGMSPNVEAFCQVHELHYQTKGRADGLHNNFGCYNFAYQKDTKAPVIGYRTKWPTGWTSEWFYIKADEKKREKLMTM
VMSPLKLSFGMTRPLCHMQLGSPCQLAEVEFKVVAAEISIRDLVQEYLANRIFPTSSGWGMPQEKEGGGKKYELVRLPYx
FKFEKQFKKPCKELLEMIETMCNEILGNYTKKEDQLMTTAFGTRPKRRLNRVMDTLNFEYPDY
>CRM#LTR/Gypsy 1023-5710 [Zea mays]
MAGLEVDDASRNMPHSPRTKGIIQHFVRLVKTHTEGLDNDMQVTNEKMGQLEATQIDTNTKLANVEMTVAHIDKSLVALL
RRFDEMHANTNGGRDEGAEGNWDDYVADTEQDDQEAPNRRRLRTNRRGMGGFHRREVHGNDDAFSKVKFKIPPFDGKYDP
DAYITWEIAVDQKFACHEFPENARVRAATSEFTEFASVWWIEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDMLNKLQ
QLRQGTKSVEEYYQELQMGMLRCNIEEGEESAMARFLGGLNREIQDILAYKDYANVTRLFHLACKAEREVQGRRASARSN
VSAGKSTPWQQRTTTSMTGRTLAPTPSPSRPAPPPSSSDKPRASSTNSATKSAQKPAGSASSVASTGRTRDVLCYRCKGY
GHVQRDCPNQRVLVVKDDGGYSSASDLDEATLALLAADDAGTKEPPEEQIGADDAEHYESLIVQRVLSAQMEKAEQNQRH
TLFQTKCVIKERSCRLIIDGGSCNNLASSDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKLVRINFAIGSYRDVVDCDV
VPMDACNILLGRPWQFDSDCMHHGRSNQYSLIHHDKKIILLPMSPEAIVRDDVAKATKAKTENNKNIKVVGNNKDGIKLK
GHCLLATKTDVNELFASTTVAYALVCKDALISIQDMQHSLPPVITNILQEYSDVFPSEIPEGLPPIRGIEHQIDLIPGAS
LPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDE
LSGAIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGKFVVVYFDDILIY
SKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGF
YRRFVKDFSTIAAPLNELTKKGVHFSWGKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVA
YFSEKLSGSVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKG
KENIIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLL
QEAHGGGLMGHFGAKKTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPR
TRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTT
CHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNF
DATRRAELMLKLHETTKENIERMNARYKFASDKGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEKINDN
AYRLDLPADFGVSPTFNIADLKPYLGEEVELESRTTQMQEGE
>Erika1_TM#LTR/Gypsy 1098-5590 via tfasty with SUKKULA4_HV_gagpol, 1 frameshift and 4 stopcodons. [Triticum monococcum]
MLQFSFRWIHLLYFSICVLMVVNLFRMAPAKSTSQNQNQDPPPPPPPPEAWQAVMAATNANTQLIMQIIQERNxSSQANQ
GSNQNQFATLNQFLANGPKTFSNCVEATDADDWLVDLGKHFECSNVRPEDFVKFASFQLKDQAAEWFQQYRDSRGGRLIT
WDDFRRDFRAHHIPQSVTESKREEFRNLKQGSLSVYDYNKLFQKLARFAKQDVPDEKSMIYQFRGGLREEIQLALVLFEP
LRYDEFYNMALKQEAAQLRCDASRKRVRDTSSSSSTQVAKQQKYWLPPPPFRQPYQxKSKGGSGSSHPPNPGLQNKTSSQ
APRSSAPYHRPLSEVTCNKCQQKGHYANKCFNQRRLPPPPPVRSASTAVVKHNPKHAKVNMVNAAQAEDSSDVIMGNLPV
NNVPAKVLFDTGASHSFLSCPFASKHNVDTEIMPKAMQVVSPGKLLTSSLVALDISITLGDYKFLSSPVVLGNSDIDLIL
GMDWLSKHKAHLDCAARQIQLTHSSEDVIVFAARDNTIQLFSLNEKGELDAISQIPVVCEYQDVFPEELPGMPPNRPVEF
VIELEPGTEPVCKRPYKLGPEELKELKKQLDVQERMGLIRPSTSPWGCGVLFVKKKDGTDRLCVDYRPLNKKTIKNKYPL
ANINELFEQLKGAQVFYKLDLRMGYHQIRIREQDIPKTAFRTSYGSYEYTVMSFGLANAPPTFSRMMNFIFNPYTNDFFL
VYLDDILVFSKNKEDHAKHLRLVLDKLREHQFYAKFSKCEFWLDEVLYLGHIISAKGISVDPEKVSAIVNWEPPQNVKQL
RSFLGLASYCRRFVENFSKIAKPLSNLLQKHVKYVWSPECDVAFNALKEKLITAPVLTPPDETKPYEVFCDASLQGLGAV
LMQEKKVVAYTSRQLKPNEKNYPTHDLELAAVVHALLTxRHLLLGRKVDIFTDHKSLKYIFTQPNLNLRQTRWVEMIQEY
NPSIEYTPGKANVIADALSRKAYCNSLILKPYQPELCEAFRKLNLQVVPQGFLANLQVSPTLEDQIRQAQLLDAMVKKVK
IGIAKSQSKYKCYRLDDKDTLFFEDRMVVPKGELRKVIMNEAHNSLLSIHPGSTKMYQDLKQTYWWTRMKREIAQFVNEC
DVCRRVKAEHQRPAGLLQPLAILEWKFDHIEMDFVTGFPKSKRGNDAIFVVIDKLTKVAHFLPIKESITVAQLAELYTSR
IVSLHGIPQVISSDHGSIFTSKFWDSFQKAMGTSIRFSTAFHPQTSGQVERVNQILEDMLRACVISFGMKxEDCLPYAEF
SYNNSFQASSGKAPFEILYGRKCRTPLNWSETGERQLLGNDLITEAKEMCKVIRDNLKAARSCQKSYYDSKHCDLAFEIG
DHVYLRVSPMKGTRRFGIKGKLAPRYVGPFKIVSKRGDLAYQLELPATFANVHDVFHVSQLRKCFKTPERTVNFEDIELQ
EDLSYREHPVAILEETERKTHNKAIKFLKVKWSHHSDREATWEREDHLRSEYPEFFQS
>DEL_LH_gagpol#LTR/Gypsy gi|226407|prf||1510387A retrotransposon del1-46 (this entry has conveniently all 15 or so stopcodons eliminated (no X in it's place). put back in) [Lilium henryi]
MVRENDSRSSTGGNVVDPFAQLLAVLQNMTNILHQxQAAISHQxAEQSARQGxESRPRLIKEFKGLNPPIFKGDPDPLEA
HRWIRHVTKILDTLGVTDEQKVILASFQLQGEAEFWWDAKVRSREDDTTQIKWDEFVEVFTEKFFPDTVRDDLERFMTLV
QGSLTVAQYEAKFEELSRYAPYQVDINIRKVKRFEQGLKLSITKQLSSHLIKDYREVITRALSVEKREQREAQIMAKRSK
KNRGHNHPYTRKEPHRQxSNDKSQCPNPLSPGKVCYSYGQPGHFKSNYLTLMAPPxQQHPPPYRPPQNQPRPPQHQGEGP
RVTRVNALIAQDPGVSGTMIRSILSIFSSLCHVLIDTGSTHSFITPRIIKMLEIPVQPLGYILSVISPIGTSTFVNQVCK
GCMITIGNQELTVDLIILDLEDPDILLGMDWLAAYHVVLDCFSKKVTFHLPGIPEFHFHGETQHTFFPTFTHQPNLSYLA
SLASEINITPSTDLSLIVREYINVFPDDLPGLPPPREIEFQINLLPGTSPISITPYHMAPSELQELKEQLEDLLNKGFIR
GSTSPWGAHVLFDPKKDDSKRMCIDYxKLNSVTVKNKYPLPRIDDLFDQLNGAxYFSKIDLRFRYHQLRIRAxDIPKTAF
RTRYGHYEFLVMPFGLTNVPTAFMNLMNRVFREYLDKFIVVFVDYVLIYSRTQKDHEHHLRISLQLLRNNQLYAKLSKCE
FWMEKVKFLGHVVSREGIVVDPVKVKAVMNWELPKNIFEIRSFLGLAGYYRRFIKGFSKLAALMTQLTKKGENFNWTKKY
QNSFDELKRxLTTVPVLTIPISGxPFVVYTDASLAGLEGVLMQDGRVVAYASRQLKVHENNYPTHDLELAVVIFILKLWR
HYLYGEDFELYCDHKSLKYISTQKDLNLRQRxWIEVLKDFDFSIFYHPGKANVVADALSRKSQISHLISARHEFFVTIEG
FNLLVRYDSHHTVLCNLRAKPNLINVISDAQRFDSELEAIHENIIQGKQDKDWTIDRDNAVRFGRLVVPLDQDIRTKVLE
ESHRSKFTIHPGSTKMYRNLKINFWWSGIKREVVEYVSRCLICQQVKADHHHHSGLLQPLPVSEwKWEHILMDFIIGFPL
SKRCHDSIWVIVDRFTKSAHFIPIHTTISGKDLAeLYIKEIIRLHGIPTTIVTDRDTKFTSRFWGSLKSLGTELFFSTAF
HPQTDGqSERTIQILEDMLRSCSLDFKGNWEEHLPLVEFAYNNSYQSSIGMAPFEALYGRPCRSPTCWAEIGEHHLIRPE
LIQQTTNAIEVIKRRLKAAQDRQKSYTDIRRHPLEFSVGNHIFLEVSPRKGTSYFVFKGKLSPRYTGPFEILEIIWPVAY
RLALPPMLSSIHNVFHISMLRKYEPDPSHILDWEDLRLNPDISYEEKPVQVLASESKVLRNKIILMVKVLWQHHSEEEAT
WELEADMQEeFPNLFSGM
>Gypsy3_env#LTR/Gypsy 4853-6175 via tfasty with GTWIN_env, 2 frameshifts and 1 stopcodon. [Drosophila fruit fly genus]
YYRSFPTLLLCLLAVASAHVTDYTHANYIPVIDGQVLVExEYAYVRHSANLSEYRRVIDETNGMVDMFPESHMKKLLSID
IAHLRDMLDSLSVHHRVARSLDFLGTALKVVAGTPDAEDFENIKFTEARLIDAHKSQIEINTKTQVRINELTDTINQLLK
ISKDKQIDTGHLYEMLLTRNRIIVMELxNLLLTITLAKINVVSPVFLDHTDLENVWGEEHTNTPIREILSVASVKVLQSL
NVLHFIIKFPKIVMACNKFTVFPVAHHNTVLRLEDNMVAECNGEIRTVKNCFRSLGATFCQLSSVSSCAQELHAGGMAHC
NTQQSDLHPITYVDEGNIIINKISDRHSPVLNISMKHEILSLPYLHRLSERNLEQIRKFEQDVDGYRLGQIALIAGAIFC
ALICIGLTCQRAIRVKKSTAQLKEVLSKIGSAEDGLNLEGG
>Gypsy9-NVi#LTR/Gypsy 68-4109 via tfasty with Gypsy-6_NV, 1 frameshift and 4 stopcodons.  (80 AA deletion)  [Nasonia vitripennis]
MSTKEEIERLTAELNKQKKEVDQKIAELQALDKKVKEDNKKLEATRQLVELGNSSARHTTLVRGTIGSITEFSMDEDWQM
WYERLEQYCVTNEVPAEKHVSLFLTLLGKDGYTLLRNLCTPRIPSQMLIIELAKIMKDHLQPAPSVITERYKFKECRQRT
GEDIKGYVANLKKMSTFCEFGSNLESHLRDQFVWGVASEAIKKRLLGETDLTYHRAIELAASLESAGRDAAEMGTTASVA
ADAVNYVADKKVTPGKQTRATGGDSRNCYCCGRPNDRASDCTFRNYKCNSCGKTGHLTIVECVEIEILRKRVCGIRLSLT
KIKRVIQRDRTKNKLRRRSRVVGxNVDYYRxYIFDIFFVLEEINAIREHDDAKPLCVQMMIEGAMMEFEVDTGSPITAIS
SRVYKNAKNLSKLKLEKTSRVFKTYHDKKICPLGTVQVKVIYKKKSLVLELFVLPSDSDTPIVGRQWLRHLGMIQVNGDK
EGVNVLTIHTLCGISMSDLLREFDSVFSGKLGTYRGGKLSLPLKPNAVPVFYKPRPVPFAIRKPLDKELERLIRENIIEP
SNSSDWATPIVPVIKSNGEILFQKEMEKLLDSVKGTAVYFNDVFISGKSQAEHDSNLRKVLNRFKEAGLTVKLEKCQYSE
QKIQFLGYELDSKGLHVSESKIKAIxKMEAPTKVAELKSFLGAMQCYAKFIKDFAKVVSPLYELTREDVKWDWTKEREAA
FQTTKKCLMSHDVLVHYSTEVPIKVTCDASPKSIGAVLSHIFPNGDEKPVAFASRVLTRAERNYSQLDREALAIVFGVKS
FHRYIYGRDFTLETDHKALSFIFGSKKGILQIAASRVQRWAIFLSGYNFRIKYINGKDNGPADALSRVLVDEFKAKHKES
EEYTYLNYLSDDIQSINVDTVRVETARDPILTKVYEFVSNGWPKKVDDNLQAFKNREFELSIENGCIMWGHMLVIPYVLR
FNYFQKLHSAHAGIIKxFWWPKLDHEIENIVKSCKLCLEVAENPPKSTLHVWKWPEEPNQRIHADFCGPVNGFMYLIIID
AHSKLIDIKEMSDITAKNTIGAFKEYFSVWGLPNALVTDNGPTFTSEAFKDFLDKNNVKHHRTALYHPASNGAAENAVRS
FKNKFKKLCKDKLSRQDALLRYLLYYCSTPHSTTGVCPAELQIGKKLRTRLSAISSVACKNVKRSQERQCRNFKGNRNIE
FKKNDVVMAKDYAVDKWRVAEVVDKLGPVTYSVSTNDTRTWKRHTDQLRSYENPMYAQSNVSTDNVNSGFLIPNSFCKEP
SIISNSNFVKHQSFGIAKEATASQSEPMSTETVNINEQPNATIASTGLSQNVRRSTRNRRAPERLNL
>Gypsy8_DR_gag#LTR/Gypsy 93-1961 [Danio rerio]
MDVIEREDVKIENAVIISGLTLTETDEVVESYLLRFGSIRQNFLIDDPQSVFHHNAVVEFSHNSAICNIEPQLPLTIVSP
TDMSVIFRIHKLSTAYSTATSSDTAKQLKSQEDKNVESQQDIIKQNSMKMNGVTHLDDASHREDCGLENLKSSTKVLTSV
TNTPQRTGSFKPSALKIDNNNPAKVNMSTTSPHSLTEANSVSVRIPISSMHPPDIQRVIMEHVVKMSETVPQHSASFRLK
AFSGRMPRPGNEPDFDTWRTSVDYLLNELSLSESHKMQKILDSLLPPASDVIKHVSPNAPASECLRLLESVYGSVEDGDE
LLAKFINTLQDPGEKSSAYLHRLYVLLCTTIRRGGIAESERDRYLLKQFCRGCWDNALIVELQLERIKADPLSFAELAVL
LRTAEEKKTSKEERMRKHLGLGRPSPTPLKLRTITHQQSAHFNNSLEVDATNIPAFDNPKQKVSKQKSKTQCPETSEADA
LKKEIMALQSQITAIKTAADQEARERTEASELQQLKGQIAELKVQLATSGAQRKQFQKSPQQSNNPSDFGVSRERNERQK
NTELRTNRPRPWYCFRCGDDGHLAIYCENAPNPLRVEEKRQKLREKQAEWDLRNGGATVPLN
>Gypsy9_Dya#LTR/Gypsy 64-4089 (L for M)  [Drosophila yakuba]
LQNKNLIELVRAIQTTTPDSVQSKSVQLPKYNPDKTGAIASSWCTTVEIILKENPLKGSALVVALSSALEGSASQWLSQV
CYADITWLEFKEIFIQRFDTKETPAAMFLNMLTKRPTDGECLATHASRMVTELTTKWREMETEEIAVSVTLALLASFDNR
LQRLTFTSNVQSRGDLQSELKAFTFNKRKSGFVEQQTEAHPKRQKPLSMECHFCGKFGHKMFECRLRKQQQHASNNERHD
RYDEHQRGKPNVTCYKCGERGHISTQCTQKESDKKTFIREKRVEQCSVAVPKGYMNHKGKIFEVTFDSGAECSLMKEKIS
TTFSGKRLNNIVMLKGIGSNGICSTVQILSNVKIDENCIEILFYVIGDDHMQNDIVIGREILNQGFDIALSSKEFKIIRS
KIINLCTGSEPADIDTELEGQDKIKLNSLLSKYSNCFIKGIPCTKVKVGEIKIRLIDPRKTIQRRPYRLSPCERDLVREK
INELLKCNIIRPSCSPYASPILLVKKKNGSDRLCVDYRELNSNTIADKYPLPLIQDQINRLRGVKYFTCLDMASGYYQIP
LNSESIEYTAFVTPDGQYEFLSMPFGLKNAPSVFQRLVMQALGDLANSYVIVYMDDIMITAANQCEALERLEIVLNILTD
AGFSFNITKCSFLKTSVQYLGFCVSAGEIRPNPQKIVALTALPPPQSVTSLRQFIGLASYFRQFIKGFSQLMKPLYFLTS
KKNKFIWKTEHEEIRRTVIFTLTDKPVLVIFDPNYPIELHTDASCSGYGAILLHKIDNKPQVIEYYSKTTSPAESRYHSY
ELETLAVVNAIKHFRHYLLGRNFTVFTDCNSLKASRNKQDLTPRAQRWWAYLQSFTFDIQYREGKRMAHVDFLSRNPIST
KPTSAAKVTEEKRVNLAEISSNWLIAEQRRDSDIAEIVNRLKEFSLAEDIAKTYELRAEVLYRKIQRNGRTRCLPVVPRA
FRWSVINQVHESIMHLGFEKTLDKVYDFYWFDNMSKYIRKFVDNCITCKMSKSTSGKIQAELHPIPKINIPWHTIHIDIT
GKLSGKSDQKEYIIVQVDAFTKYVYLYHTLKLDSENCINAVKSSVSLFGVPNRIIADQGRCFTGAKFSQFCSDHKINLHL
IATGASRANGQVERTMSTLKNMLTAAETGTQSWQDVLGDVQLAINCTTNRVTRASPLEMLLGRVARPLGLLPPSDLENDV
DLKNVREQAEKNVLATAVYDKERFDKNKAKILRHQVGDFVLLKSEERHQTKLSPKFKGPFEITQVLEGDRYILKSLTNKR
KYKYAHEDLRKLPEGEVPEELNVFDDYNNNFESKNENNVEDESEKENIENVEVNKECEAYQ
>Gypsy10_Dpse_env#LTR/Gypsy 3157-4565 via tfasty with Gypsy4_env, 1 frameshift. [Drosophila pseudoobscura]
MYANILILTFVILTTSEVIDYTHSDYLLLKDDRDVYTYETYAELFHITNLSFYREIIDKESKYVNKSINSDDEWEISMDL
SHIKINDFRISSKTGINELGTIWKWIAGSPDHDDFLKIQNKVNELTENNNKQFVINSKFFKEIELLSNSLKNVIFNEETI
LRKHRLKLITFDLLNLVDTITLLKVNIFNTKILNKNEIEDIYKHEKHNVELSDLLDIATIKIIRNADLIIIYIKYPQIKD
ICKFYHARAISQNDGMLVISEKVCECKEKYYLMNNFKSETFNNYAQINLKSTCFTNLLNGFNANCTKKREKNKEIDIIQD
GAILVSGKNIVDNTTLLGSYLLIFNNTIVINNITHINDKGKILRYISHHRYSDFELVDYIQSNDKQFSFDNVNILNPLIT
LGNTALPLKTLFLIILILLMLFYFGYKLTKFVLIKSIRIPSEEIVESNIQILSEEIRALSELQNVSGRNI
>Gypsy10-PTR#LTR/Gypsy 656-3343 [Populus trichocarpa]
MIWAKQLLQVEGLDLPIQIKELLEEFKDVFPDELPKGLPPIRGIEHQIDLVPGASLPNRPAYRCNPEEAKEIQRQVGELL
EKGYVRESLSPCSVPTLLVPKKDGTMRMCMDSRAINKITVKYRFPIPRLDDLLDELHGAALFSKVDLMSGYHQIRMKEGD
EWKTPFKTKQGLYEWMVMPFGLSNAPSTFMRLMNHVLRKYIGLFVVVYFDDILVYSKTFDDHMKHLRVVFETLRDSKLYG
KLTKCYFCKESVVFLGYIISSRGVKVDEEKIEAIRDWPKPASIAYVRSFHGLASFYRRFVKDFSSIVAPMTECLKNGNDF
RWSEDAQKAFELIKEKLCTAPVLALPDFAKTFKIECDASGVGIGAVLLQEKRPIAFFSEKLNGARLNYSIYDKEFYALIR
ALEVWQHYLLPKEFVIHTDHESLKYLKGQSKLNRRHAKWVEFMESFPYVIKYKKGQVNVVADALSRRFALISMLNARLMG
FEQVKEQYANDSYFANVVVECAKGACDGFFMHEGYLIKMGRMCIPSGLLRELLVREAHGGGLSGHFGEKKTYELLKEHFF
WPSMLRDVHKVIERCAICKKAKGKENAYGLYMPLPIPEQPWMDVSMDFVLGLPRTQRGKDSIMVVVDRFSKMSHFIPCNK
TDDAVHVADLFFQEVVRLHGVPKSIVSDRDTKFLSHFWKTLWRKLGTKLLFSMACHPQTDGQTEVVNRTLSSLLRAVIHK
NLKSWDTCLPIVEFAYNRSVHGATKFSPFEVVYGFNPCVPIDLIHIPIDERTSMDGIRKAELMKKLHEQVRLHIEEKTIK
YAKQANKGRKMVRFEPGDLVWIHISKGRFPSKRKSKLMPRADGPFRIIEKVNDNAYKVDLPGNYNVSATFNVKDLTPYLD
DDDDSDLRTNHFQPGA
>Gypsy7_Dya#LTR/Gypsy 811-4162 via tfasty with Gypsy65_AG, 1 frameshift and 2 stopcodons. [Drosophila yakuba]
DVDAIRKSSTRKTKPQGECSRCGRFGHASYDSSCPARQAKCYKCSKIGHFSRKCRTTLKRRNSQCNFENVKKRKTNVRCV
EGENTELKLEKENTNCFKIASDEEEEFIYYRVEGQKIPLVIDSGSRFNLISSSDWQLLQKKGAIIFNDRSHSEKQFRGYA
SxQLLEVIRIFEAPISAERDIEVIATFYVIKNGRQSLLGRPTAIQLNVLRLGLNVNRDEEPTPFPKWKGVKVKLCIDPEI
RPVQQPVRRIPVALEEKVHAKLEEALGHDIIEPVLGPSSWISPIVLAFKENGDIRLCVDMRLANKAIQRENYPLPIFESF
MTKLKDAKFFSRLDLKDAYHQxELEESSREITTFITSKELFRYKRLMFGVNSAPEIFQRRLETLLAAFPNAMNYIDDVIT
FGANELEHDETVKAVCKVFNDNNVLLNKQKCIWKTNRLKFLEHILSDSGIEVDPEKIEVIKSFRVPKNKEETRSFLGLIT
YVGNFIPDLADNKEPLRLLLRKDSIFQWGNTEEKAFQKLKCHLAHVPNLAYFNPKNRTRLIADASPVALGSVLLQFDGKG
DPLIISFASKALSEVEKRYSQTEKESLALVWAVEKFYYYLAGLHFELVTDHKPLEAIFKPTSKPPARIERWLLRLQSYRF
KVIYKTEKENISDILSRLCQSSSSPTTNRMEYSILRVVESAIPKSMTISEIAESSLRDEEVVDAIHSLENNSWEREKSTK
LHPFRFELSTIGPLLLRGNRIVIPTNLRKRVLELANEGHPGESAMKRRLRSKVWWPLIDRDAEEFVKTCRDCLMVSQSIR
PAPMNRNPFPTGPWIWVASDLLGPLPNNEFILVFIDYFSRYMEFKFLRSISSSSLIGVMKEIFCRLGYPKYLRTDNGRQY
ISDEFSEYCKTCGIEQVRTPPYWPQANGEVENMNKSLVKRLKIAYSNSKNYKEEIQKFVVMHNVTPHGTTGIAPNQLMFN
RIIRDKLPGIEELNEQFTDSAERDRDIIQKEKGKEAADKKRGAKNIDIKIGDKVLVRNVVFPNKLTPTFDPTEFEVLERH
KNIVKIAGGGKTLMRNVAHVKKIPGDVYVPPAPESGTLQTIPAPFQEALEDQPSEVPAQHSPPKVKPLKLRLINKGG
>Gypsy4_Dpse_pol#LTR/Gypsy 2324-5371 (gag & pol in one reading frame; artificial break) [Drosophila pseudoobscura]
MLLETVIGKLHDFRPYAQVTLLGNTVVGLLDTGASVCCIGGHLAKDVMEKTEYKRLSATVKTADGKSQDIIGRLTTEVSY
RGESKKITFFVVPSLSGDLYLGIDFWKAFNLLPVSLLSEQLSVLSVSDPLSRSLTVHQQKTLAAAILLFPSFAIKGLGRT
TLISHSIDIADAKPIKQRHYPVSPAIEKLMYNELDRMLKLGVIEESNSSWSSPVVLVRKPGKVRLCIDSRKLNDSTVKDA
YPMPLIDGILARLPKAEFITSLDLKDAFWQIPLDKKSRDKTAFTVPGRPLYQFTVMPFGLTNSPQTMSRLMDKVIPANLR
NEVFIYLDDLLIVSDTFERHLEVLGILATQFKIANLTLNVEKSHFCIKEVKYLGHVIGNGTINTDPDKIAAVTDFPVPRS
IKQVRRFLGLTGWYHKFIRNYAALAAPLTDTLKQKRSFVWSEEAQKSFELLKERMSTAPVLHSPNFNIPFSIHCDASDSG
VGAVLMQTNEDKDEVPVAFMSRKLNKCQRNYTVTEKECLAAVLAVKKFRAYIEGQEFIIITDHASLKWLMTQSDLSSRLA
RWSLKLQGFPFKIQHRKGSQNVVPDALSRTNTEDLSALVLSSIVDLQSEEFRSPEYVALRDKLVENASKTPDLKIVDGYI
YRRAEHAAGDKVADDLCWKLWIPRGLVEETLKDAHENQLSAHCGINKTLEKLRRFYYWPNLVSDVRTYINNCHVCKITKH
PNHTLRPPLGNIGTSDRFFQKLFVDFLGPYPRSRSGHIGIFIVVDHLSKFPFLKPVKKFTADVVARYLEEDLFHCFGVPE
TIVSDNGVQFRSEVFNALLGKYHIVHRYTAVYAPQANASERVNRSVIAAMKSYVRPDQKNWDEQLSNICCALRSSVHSAI
NTTPYRLAFGQHMIVDGASYRLLRNLQMLEDRTVQFGKEDSFDLIRHKAKDTMHAQHARNERTYNLRSRQVSFVVGQEIY
RRNFQQSNFAKGFSAKLAPAFIKSRIRQKLGNCYYEVEDLQGKLIGKFHAKDLKQ
>Gypsy3_MT_orf1#LTR/Gypsy 758-2173  [Medicago truncatula]
MERRNTRKFTFRKLDLEXLKKLAFEVTSLEXFCDRHGXLLGXLWTNIEKGCLETLVQFYDPAYHCFTFPDYQLMPTLEEY
SHLIGLPVLDKVPFTGLEPFPKAATIANALHLKTSLIKEKLTLKGNLPSLPTKFLYQQASXXSKTNNVEAFYSILALLIY
GLVLFPNIDNYVDIHAXQIFLTKNPVPTLLADIYHSIHDRTQVGRGAILGCAPLLYKWFTSHLPQTHSFQANPENLSWPK
RIMSLTPSDITWYRATCNFTNIIVSCGEYSNVPLLGTQGGISYNPILAKRQFGXPMEAKPDNIYXQGEFYFNHEDPSNKR
GRFVQAWHAIRTLNRSQLARRSDSLQGSYTQWVINRASXLVLPYHLPRYLSSTTPAPALPLAPATVEECQEKLAXSECVG
ATWXRKYDEAMLKMETMSGEIEQXEHEVHKXRRQIVKKNVQIRAQSTRLSQFISAGERWEFFKXAHSDSDE
>Gypsy4_VC_gag#LTR/Gypsy 38-1630 [Volvox carteri]
MRYNKAAQKRLTKFLELQKSYERYREASLQEQDPAAPEAANSDDEDERPLAIPNKGHHINNIPVNCPQMDVDPPAESPSE
TAQRASPSTGGLPARTPAQAAAAAQVQEMLRAARDNQVPALQAELSSFKGEVHGILAEYGERLGEITSALKDVQAQLRDL
TPTSLPPSTSDTRRKTIIIDGICETLDSNLAAFLDVDMLQNCAFQALLQRHLTPEVRLEEVKQLWGEGIAKQAGGPSGSA
APPSKSARPSEVNKRILAPPRFSGKKDSQITNTKTWFALLMQYFDLSQMDPLEHFMFWLTGKAQEWAADLFLKHKSGAQP
LTRDLLRDKFLLQYGDAKRDTAMAARDRLHAHEYDMKIDESVPEYTQRFYDIVREANDMSVADQISWYIKGLVPALRGRC
ATDDEGKDWQDLEKLILYASGQEVRWKAGKDKAQLAVVTTQAGPSKITSSSRPKQSRPRSPSKQAWETVRAKKPRTSTSG
TPLKCRMCSRLKPANQTWEEHKKDCLRHLQEQMARLQEKTASLNANRPAN
>Gypsy7-NVi_pol#LTR/Gypsy 4915-9932 via tfasty with TED_pol, 2 frameshifts and 1 stopcodons. Deleted an apparent insertion at 6826-8444 before translation. [Nasonia vitripennis]
PQNVNWEDDKATAVRIRIPVGTTKPWVGFMIDNGAIVNLIKASVLDDDMPICTADARELGEITNQTVKMYASIYLDIKGT
PVKFQMVSDDFPIPFDGMLGRNYLKKEEAVISYYKNALMISGDVMHPIPFIEHEEEHNPRNIKRGYKCKQTNEVLKVEST
QSGKSESMNQNDENITDQIGGTVKHIIKARTRQVIQINLIKTELKEGYIPRIDVGNKHLFQGEGVVTNVNNTCKIMAINT
SEEDVIIEVDPKELIPFDTGPDFSEFNGDMIVDQIKRLERVKEAIRRDHLNRKELDIVDRIIEDYLDRFLLTGDKLPCTD
MIEHHIHLENDVPINTKQYRHPPQHKQVVRDSVEKKLRYKIIRESNSPCNSPIWIVPKKPDSHGNLRWRMMIDFRELNKK
TIRDAYPLPNIADIMDQLGGATYFSIFDLASGFQQIPIAPEDCYNTAFTPINGHYEYTRMPEGLKNATATFQKLMEKVLR
RLQNIEMLVYLDDIIVYSKDLQEHGSRIRNLMQRLREAKLVLQPDKIEFFRKEVGFLGHIISARGVEPNPEKVAAIAKLA
TPKSAKNIRKVLGMFGYYxKYINDFAKIAKPLNDLLKKNVKFEWTEKCEESFEKLKQCLMEESILQFPDFNREREFTTIG
AVLSQEKDGFDHPVQYLSRALNKAERNYSTTEKECLAVLYALHQFRPYLLCRKFTLVSDHESLNWMHTRKDTGQRLMRWM
FRFTGYEYTFKYKPGKLNKNADALSRHPPEMTEKEINENLPKIKVMIIDEKKKQNGNKAKSNASTDGTIFRNRAMIRAPH
NIITVRECLTHKRDNIVNFLSADCDNTWSVARLLVETEAIDLMKIKNQKPKSGQVLVTPFKKHHIFTVIVKDKYFNTIKM
PNLHEALINLKQILVEKGIKSFRVARKGDILDQLGSPTIIEMLYEHFHRSGIRVTMCYGEAEVPSEKHRKEIISHLHDSL
TGGHKGINQTYQKIREWYYWPGMRNDVQDYIRRCANCQEQKIERFKTREPMIITDTPIEAFDKVSIDTVGKLKMTPRGNC
HLLTMQCNLTKYLIAIPIKNLHATTIADALAKYLICHSEPRGTSFLSNIVESLLKLFKINHLTTSGYRPQTNGSLETSHA
PLIEFIRIYHEKYDDCDHLTPFATFTYNTSIHAATNFTPFELVYGRVACFPLRIPSDEKLRTYNVYMRDLVLRLEEMTLL
ASETQIANKVKTKARYDKKVRTFKGKVGGYARLINEPRVSKFDEYRNKPLKIIEFVGRKNVILEYPNGKRIRKHIDKLKH
VEDDSDTNSD
>Gypsy6_DR_gag#LTR/Gypsy 160-1224 [Danio]
MEDELRELRELVTQLKADNERLRQEQVPAALPGPSNISIPVVSDPPLIDAGPSSTDRFVFVPRDRKCPKFSGRSGIDINE
WVEEAEACMRLRHLSSADRAFFLFDHLEGEAREEIRYRPQSEREDPKRVIQVLRDLYGCTKSYVALQESFFSRRQQEGET
LEFSLALMSLLEMVKGQSPHGMPNAEILLRDQFVENVNDCTLRRELKQFVRRQPTATLVDVRGEALRWEREGMPGGARGR
SQSVPSVYGIQYGVQGNRSVSSGAKSEMTELRDMLLKQQQQLNQLVQSMSLLQSCSPSLPPPKVNPVICRRCRQPGHFAR
NCDGGRMSVRAPSAQITSALTRREQSSSSQPSEN
>EnSpm-10_HM#DNA/CMC-EnSpm 1173-3116 [Hydra magnipapillata]
MLYQNSYNYLAEDTLKSSNVEFGDISYFDENQPSNLTNSSDDDCNITDDEHGYYPSCSSDNEEAQDEVTLKELLICWSVK
HNVTHSALSDLLKILSKQHPDLPKDSRTLLKTKSSSDIIIMQDMFGQKAEFVYFGLKHQLISLLVFNSIESCKVSLLFSI
DGLPLYKSSGKQFWPILCSVTIGENIYKPFVVSIFCGNSKPKSSAIFLASFVAEFNVLKEQGLFIGENHFTIHAKGFVCD
APARAFVKCIKGHNGYYGCERCIQKGTRVDNRTVFPDVNAMKRTDASFALFQQVQHHKPDAVPPLLELNIGHISQFPLEY
MHLVCLGATRRLLLHWLRGKRAVKISTLIADLISNGLKNLAAYVTVEFARKPRSLKDIDRWKATEFRLFLCYLGPLVLRS
HLTNNLYQHFMLLHVAINILANPNMCWTHVDYAEKLLNIFVMQMPDFYGSSSINYTMHSLCHICDDVRQYGSLDEYSAFP
FENALGIMKRLLRSGHMPLQQLCRRLSERINSNTYSISRNMHLIPSLKRLHSNGPTLGYYGKQYLKVEYAGFTYFSANSN
NCALLDSGKVVLIENVIDADNIMIITRVFGLKENFYTYPCESSLLNIFKVSQLSDQFFAFPITSIVKKCLLLPRETYFVS
FALLHRD
>L1-15_Mad#LINE/L1 248-3627 via tfasty with OSLINE1_1_pol, 1 frameshift and 1 stopcodon. [Malus x domestica]
MLKIVEECWANLGVGPLPGQWVQKLNACRVSLSRWSRTKFHQRSQQIEALSRQLVELQKQWGNNFQDILEKQKQMADLQT
QEASYWHQRSRVKWLREGDSNTKFFHHSTLQRRRRNMILKLKDDDGHWIEHPSRIRQMVEEHFQTLFKSGGSRNWGDLLE
CVSPGITEEMNRDLIAPVSDEEIRTAVMKMGRLQAPGPDGFQGIFYQTFWDTLKTDVQLLIRALMHEEVVPTTINSTHIV
LIPKVPNPESVSQFRPISLCNYSYKVLSKVLANRLKVVMPNIISPSQNAFVEGRQIHDNIGIAHEMFHFLKGRKAKSKYE
LGIKLDMQKAYDRVEWDFLDAVMEKMGFCTRWRQLIMGCVSSVQSAILLNGQPGKCFAHSRGIRQGDPLSPFLFLLVGEV
FSCLIQNAVQKNLLDGVQLGASGPVISHNFFADDTLLFLKADGKNCRNLVDLINKYCEASGQLVNFQKSSVYFGANIPKR
VSADLAHILNVKAVEDPGAYLGVPAIWGRSKVKGLAFIREKILGKVQGWKHKLLSSAGREVLIKAVVQALPAYPMYMFKF
PASVCQDFDSLVADFWWGRQGASRKTHWVSKEVLGLPKDWGGLGFRNFADFNDALLAKQCWRLLSDPMSLWARVVKARYF
PNCSFWDATKGGWASWAWSSLLVGREVLRKGAHWQIMGGHDVRVWVDRWLPSLPLGRPEQLGEVAVSPNLRVHSLISQES
RIWDIDFLLPFLSEEAKLAINCLPIGDSRYKDRLIWDASKNGRYSVKSAYRWLQLGLLLLVISGCQGRLIPKNLWNQVWN
LPAPAKIRRFFWLSLHRGLATKETLFRRKICSIVSSxLLHIGQHGTIEHILLLCPWVRAIWFGGALNYRIDGESISSWAD
WLMEVLVRFPGGTEVRKWVCSYVAFTVWFIWRTRCEFVFNQVPILPFKVLLGVSSAVGAFWEAMGWSGGGAARPSARCGP
IPLWIPHPDSFVKINVDASWSHASRSGFTGVVIRDASGQFVAAERFALSTPSVAVAEATTLLCGCKLGSSLGFKSVIVES
DSKESIDWLSGDVEVGSWKAFPVLTRVKVESDAFQFCRWSWVPRSANGAADFLASRSFPEMGSRVWVHRPPSSLVFVLNK
DGLPCPP
>L1-14_XT_pol#LINE/L1 1558-5294 via tfasty with L1-2_XT_pol, 1 frameshift. [Xenopus (silurana) tropicalis]
MSSVKVICWNVRGMGTAIKRRLVFDFVRKEKPHIIILLETHLEGKKTLALKKPWISNSYHSTYSTYARGVSILITRSCPF
SLTTITTDKWGRYVILHGLLHGRQYTIAGIYVPPPFEARLLHEIMEKITKLPPAPLLVIGDFNAIRDPELDRLKASGTPN
INFSNWVSTYGLIDIWRTRNPDKKQYTCYSPGHNSLSRIDLALGTPDLDKLVTNANILTRGISDHSPITISIKVSTDPSD
RTWRLLSPYWVTHPDLVEHIRNNITSYYEINQNSSTPDVVWDALKAYIRGEYISNIKALTTSLNSEISSLTQRVNELEAA
YVNAPSEQNRQNWLNAQNALTLAQVEATKKHILYQQVNIFEQGDKNGKLLSFLARDELAQSTIPVIKNPSGEITTDLAEV
NGAFRNFYADLYNTKIQKGEQEIDTYLHNTDIPTFEPQESQRLGTDITVQEVKDAISSFPIGKTPGLDGIPIEWYRTYKD
QLAPHLTNLFNATLAGAPLPQSMCTTLIVLILKPGKDPTECASYRPISLINSDAKILAKILASRLAPILHKVIKPDQTGF
MPGKSTDINIRRLYTNLSITHENVGNRIVASLDNEKAFDSVEWPYLWGTMKRVGIPPTYIQWVKALYAHPLARVRTNFKV
SQPFPIKRGTRQGCPLSPLLFALAMEPLACRVRSDSEVEGLKVKDNTEVISMYADDTLLYLANPDKALRAALTNINTHTA
YSGLKINWSKSILFAVDPRPPDAPTQTQGLTWSETFKYLGIWIHRDLKKFTDLNLVPVLKLTESKIKAWAPLPLSLYGRI
NLFKMILLPKLTYIFRQSPIMIKKKVFRTLRSLEITLFWNNTQPRIALATLQLPVRQGGLAAPNLFLYFLAAQLVTAWRW
ASPSTQNASTTLEAQVIGSLEELKNLLYRGTKYTKKATPLMSTTVRVWNIALNLFPSPPPHCSKYSPLWHNPKLKHFSTV
PDPQAWARYGIKYINDIYTEGKLMQFQNLKEKYLLPNKMLFRYLQLRHAASYQFQSQTINTTPRRLEEYAHTPELRKPLS
LFYSSLILAGPSPATKALTKWQKDIPTLDAEMWEDILDSCFEGMVCNRDKLLQLKYLHRTYLTPQRLHAMNPNISQTCPK
CPAPVADYFHMVWSCPAIQDFWRQVTQTIQSRTSLIVPLNPITILLNQVEETTPRRAQRTLLSILLMYAKKAIALHWKSD
SAPTIPFWTNIITKAAPLYKLTYMRRNCLEKFQKVWGDWLDAEEDE
>L1-17_Mad_pol#LINE/L1 360-3388 via tfasty with ATLINE1_2_pol, 3 frameshifts and 2 stopcodons. Fragment. [Malus x domestica]
HLSTLFRRRKNRLERLKDGSGVWIGRxEDLKVVVVDYFKELFTDRSYNKFSxMLPIFLSLLEDEVRDLNAQVDNSAIKDC
LFAIGPLKAPGIDGFHALFFQHCWNECANDVTASVQHCFQHNKIPPGINEMLITLLPKVPNPISMNQIRPISLCTTMYKV
VSKLLVCKLRPLMEKIISPNQVSFVPGRHITDNIVMAQEVLHKFKLAKGKNGFLAWKIDLSKAYDKLSWDFIAYVLYEIG
IDGSLLQLILSFISFVNFRAIVNREISYAFQPGCGIRQGDPLSPYLFIISVEKLSHLITYEVNKKTWKPVKVSSGGPGIS
HPFFAGDLLVFTKAIVTQARIVKSCIDKLCAFSNELVNFEKSKLFVSPNTGRRVARKINRICGSNVASSLGTYLGIPLLH
KRVNKATYQYVVDKVQMKLSSWKSKMLSMAGRLTLIKYVASAIPVYTMQTASIPISICDSLDKINRNFLWGNVDDRAKPH
LVSWNKVCCPMIKGGLGIKKANQMNRALLAKSGWRLLNKDNGLWANMCRKKYLKHGEADLFKIKVWKGASSSWRSITHGV
ETLHKGLKWRIGNGQNTNFWSDIWVGNDTLINYALPSVHGFDPNLKVADFIENGSWNVDKLSLMIPPQVIQNILCIPAAL
SCGGNDSMIWSGTNNGEFSVKSGYLMNFPNQEFADSSWAFIWKIKLPPKVKCFLWILSHGKLLTNEQRFKRHMSSNTFCQ
ICSSAVENMSHVFSSCHAAIWVWRNIYVPHHLHWNQFDSFLGCVEANLKCNDPHELGLPWNLVFAVALWFIWKWRCCAIF
CPNFIKPPDPKKCILEYSTEWLKANVSISSKHNRVQVLLAWVPPPSGTFKLNVDGARLGSNGVIGSGGLIRDWHGNWITG
FIAKKGVGEVLHAELWALFYGLKIAKARNFSHLIVEADSALVVSLIHGSPSLINHPLYGLVSECRSLIIENWSCNVQHVH
RERNFAADGLAKLGLNSEMEFQELAEPPPCLVQTLSDDCSGVAIARLVVS
>L1-21_XT_pol#LINE/L1 1941-5684  [Xenopus (silurana) tropicalis]
MVDTSIISWNTRGLNSKFKRALLFDYIKQRKPALLLLQETHLVGQKLLSLKKRWVAQAYHAPFSTHARGVSILVRKGVLF
ECLGLNTDFYGRYIVLHCRIANQLLTLANVYSPPPSDNDLLGKIYALIASFPSAPICLLGDFNAVLAPHLDRLGQTGTQP
TSLAKWADALGLTELWRWKHPGERQYSCHSPSYGSLSRIDLALASTDFAQLTVSAEYLPRAFSDHSPLHLTLNLSTKARR
ADWRLCPLWLSNVDVRESSQTEYAAYWERNQDTAPREVLWEASKVVARGTLISEITKARNKSKAEVKIAEIALGEAEKEY
TNTQSEESHQLLNQAQRDVELAHTKLTRKRLLYTNQRIFEQGEKAGKLLAYLSKSRDSQTLIPRIRDSNGALVTTPPEIL
DTFTKYYQNTYQSIYHATPEELTHFLDRIEFPTLPPTEAAHLNAPITESEVAEALAALPSGKTPGPDGFPVAWYNLQGPL
LVQHLHQTYLNAIEKGQLPPSFYDATVVLIAKEGKDPEICDSYRPISLINTDAKIFAKILARRLARIAPLLIHPDQTGFM
PGKSTSHNLRRVYTHLQLKHDNSGSRALVSLDAAKAFDSVEWPYLWEVLRRFGFGPQFISWIQLLYKKPMARIKIHGTPS
EPFPLHRGTRQGCPLSPLLFAFAIEPLALLIRQSPNITGFKQHTMEDKLALYADDLLLFLADTSTSMRAALQTLSLFGSY
SGLHINKAKSVILPVDPILNPPDNTHGLRWVTKFRYLGIQISPSTTPYIADNIEPLITQLKSTTTFWAKLPLTLWGRVNL
YKMIYLPKLLYKLHNSPVWVPKKTFQKINSILIPFLWANKTPRISWKSLTAPVSEGGLALPHLHLYFLASQLYYIHTWLH
ADEKDPGFLILAHQIGSPEAVQNTIYRRPSDYPKCPTTVTVPVRAWKAASKLLNYLTPPISPFLPLWSNSNLPHLQGLQD
VHYWAQMGIKYLGDIVVDGKFPTLEQLQGKLDRRDIQIFRYFQLRHAFKAQFTTLELAPTPSNIELVLRNPCTGKLISRL
YKTLLNSISPPFNTARRKWQQIIPNMTNEQWDESTDVLYTDLISIRDRLIQYKFIHQLYVTPLKLQKMGRSPEATCPKCH
NTGSSFLHLAWECPPIQSYWSKVTKYMADNLGLPNLCTPEVCLLAQIEDLVPLNKTRSLYRTILYYARKVIILNWMGNNV
PSPELWQTLINAALPSIRLTYEARGCPLKFERIWSPWLELNPGIPDGT
>L1-19_XT_pol#LINE/L1 1733-5467  [Xenopus (silurana) tropicalis]
MAGTKIRLISWNVRGLNDKIKRSIVLDHLKKLGADMMLLQETHLIGQRVRALRRHWIHPTLHAEYSTYSRGVAILFRKTS
LPSIEKTISDRYGRFLIIKLTIASTPLIIVNVYSPPPGDIALLQLIMGKIASIGDYPTVWMGDFNAVPDPNLDRLRPNKN
DTAALGDWLRASNFTEVWRWSHPNTRQFSCHSASTDSLSRIDLALASPPILQLVDSISYTTRVCSDHAPLQMDLRVPGGV
GESQWRLPPRWIQHKFVQEEFARQFKAYWETNLGTAAEPVVWDAGKAFARGTYISLIKEARRKLDTTLTEAREALEVAER
EYTRDPTEHLGEAFSIAQRNVNLVYTEKYSQGEVKRVANWYEKGDKCGRLLAILSREPSQLTAIPRILNPEGTEVHELDQ
IQNEFTTFYSELYRSKSHYPQEALTKYLDSVPIPKLTRERTEFLNQDITLDEVAEAIKSFPPGKAPGPDGLPIEWYKAHG
DIINPQLTTLFNKIPQGTPLPDSSKLATITLIPKEGKPPEKCGSYRPISLLNSDVKILAKILANRLKQIIEHLIHPDQTG
FMPNKGTDINIRRLYTNITTRHQNSGERIVVSLDTEKAFDTVEWPYLWQILARYALGDKFITWIKALYDTPRARIRVNSG
LSQEFSLARGTRQGCPLSPLLFALAIEPLAIQIRANPKIKGLQLQKLEEKLSLYADDMLVYLADPRESLSELLQETGQFG
EFSGLKVNWEKSLIFPIDPEGNRDPAHGPQLQWVDRFRYLGIEIHKDLSKXADLNLTPIIRSLKLKTQNWATLPLSLPGR
INIVKMIFLPKLLYAFHNSPVIIPKKWFRNLDAIVRGFIWAGEHPRIKWQTLQAPLNKGGLALPNFQLYYYASQLVFAWW
WLNPNPNNQAVVLEAGVISSFEALANQLHRGPSSIYPLTPPMKTVVTVFQKTVVNSYRKLSKWSKWTVLWGNDALPHLRT
IPDVSTWAAAGVKHLGDVISAGGFKQFAQLQTEFGLHNRMLFRFLQLRHALNTQFPDNAPDITVTSLERYLRRPDLTKPV
SWFYTILLQDDFDPLKHFAQKWQQDFPQLDEGTWKEILNQIPDTNISSRDRYIHTKFLNRVYLTPHRLAQIYPGHPDVCP
KCNIEQGNYMHIFWDCTEIQXFWSELLDYCTTVLGLPNVRSPXLCLLGHTEGLSLNKYEELCLLQILHFAKKAILMTWKA
TAPPTLGFWKKLVNDTLPSQKLTYLARGCPDKFNKIWDNWMKDTH
>L1-14_STu_gag#LINE/L1 143-2069 via tfasty with L1-8_STu_gag, 1 frameshift and 4 stopcodons. [Solanum tuberosum]
MENNIMYFAMGFKSFDISRTALAEKSWYDWIERGRKRMSRPSFSQNTMEWLCRTLKEASKVKGNLVCRWKRQELSTQLFC
ARNFNNRGRYISIISVQGKNRAVLIIPETAFNVGWWDLANKIEKFIYYKNTRITNKIPTLVDKKIPYAETLRKSKWTSRG
IEAATTKQDGDIIRIDSDTNLSQNETLSRSLYGQVTTNGSDSPTLSEIRRWANSNWNQTHGLNIYDMGKNCFLFEFASME
AAEHALRGSWSWKKQSLQLQWWTPTVGAIQSRAAIKQTWIRLVGLPLHLWSDKVFKAVGEYCGGWIRTEEETQLRNHLKW
ARILVKGGGNSIPKEVRIELEGIGYIIQIWNEAPVKFYAGEEKEIVGPAVVGNSLNQRIISGFEKPFPALETAVQTEEHV
GCSNIFESESKHVTGHVNALLKTQKRSNKIWAWTRWPILAEVILKQVGLRQKRSQTHSKLRLKQTxQHQGxxRLNxYSIQ
EPLLRHAMIGLRQKSKLMMMQYLLSIRRTKKIWRYTRGGYLQLKEKEEGNDTLEDILPLNSAEDEGIMDHENMIPIWVQQ
NIIKLSKEFGVHFQGCEEVALNLFMKIDGKRQVTGEAPGAIVPMTPKEKIPKELKNLEPSSNFISFGTRSRGGCFVNNLN
EG
>L1-11_XT_gag#LINE/L1 161-1201  [Xenopus (silurana) tropicalis]
MGRNKTAAKKTRTRSAADTMSQDGADPNETRNATSPGTHKGETVARRLEQYARAPLPQRSPNGRTHTSPAPATNAGTTEA
PSVTXGPTAPTQNAHSSEPTLTEVLNTITGNHTVLITRIDELKTEFTILKHDVQKIRERTGEAERRIGELEDNMNPLPGR
ITNTEKQIQALEAKADDLENRLRRNNIRILGIPERAEGTTPEKFVEQWLTNTFGQTAFSAAFTVERAHRIPGRPPPPGAP
ARPLIARLLNYRDRDAALAEARKAGDITFENQKVSIYPDFSAEVRKTRAKFTEVKQQLRQRRIPYAMIFPARLRITDNGK
THFFNTPEETTAWLETRPRNSPNRDLQ
>L1-11_STu_pol#LINE/L1 2081-5707 via tfasty with L1-4_STu_pol, 6 frameshifts. [Solanum tuberosum]
MKIKLISWNVRGLNDQGKRRVVQNLIQDWKADIVCLQETKLEGDVQDLIKQIWAGRWIKYACLEASGTRGGILMLWDSRI
WEGETLQVGAYTLSCKFKAQLSNFECHITGVYAPNSKVERRLVWEELADVRGLMDGPWAVCGDFNVCRFPSEKRDCNRRN
SAMREFSDCIEDMDLIDPQLGGGRYTWYKGDNHITASRIDRILVSTEWNNLFSNIKQYYLQRVISDHVPIALLCGHWEQS
KSYFKFENWWLNQEGFVERIKDWWNAFEFYGKPDYILACKLKALKGKLKEWSRNEQGNLKLQKNNLLNQMAELDSHLNSR
VLTEEEIAKKATLFMEYEGCLKNEEVAWRQRSRALWLKEGDRNTKFFHQTANAHKRYNHIDQLEVQGETIQPNRIKEEII
SFYKKLYTEPEEWRPSENISNHPTITEGENEVLQAEFEEQEVFECLKMCAIDKAPGPDGYTMGFYLKCWEIIKNDIMGAF
HNFHSTGMFEKSYNATYIALIPKKTGAKELKDFRPISLIGSFYKLISKVLTERLKRVVDKLVDKQQMAFIRGRQIMDAVL
IANEAIDSRVSQKKPGILCKLDIEKAYDHVNWEFILSMLRQMGFGGRWISWIKFCISTVKFSILINGSPEGFFNAHRGIR
QGDPLSPFLFIIAMEGLNNMLKIAKTTGRIQGFEVSKVAGNSVEITHLQYADDTLIFCGAEEEQLLILRLILVYFEAISG
LHINWNKSHLYPINVVPDMDHLSQILGGAIGTLPSIYLGMPLGAESRSIDIWNPILEKCEKKLARWRSQYLSLGGRLTLI
NSVLDALPTYMLSIFHIPQSVVQRLDKIRRNFLWQGNKERKGFHLVKWKNIIRSKKQGGLGIKNLKNHSKALKVKWLWRY
HQEDQALWYRVIKSKYEELNKWVTKEVNTPYGISLWKSIRIFWPFLSNQSTVKVRNGRKTSFWIDKWMGTVSLKDRFPDI
FALAQHQQKTVAEMWTQQGWDLILRRNLNDWEIPRMIELFKVLENFQGIQTGEDYLWWHGHNKGTYKVKEGYKQISPGGI
QDFKWPWKQIWRIKVPHKVACFTWLLANEAVLTLDNVAKRGISLCNRCSLCGKDNETVRHLFLHCNFTDQLWQIFLNLRG
ISWSMPSKIDETLFSWEEAGVGATNRERWRMIPACIWWTIWRERNDRCFENRNNNLQEVKLKCILLFCFWCTNVYSNETE
SIIDVLGSI
>L1-12_DR_gag#LINE/L1 113-1171 [Danio rerio]
MMEGEKIKKGKGKQLGKADKGSNLEDTAVAEEQGERNGGQEENLKLATVDDSVAAIRADIKMMALEMKSELNNFRDDLKR
ELVDFRKEIYQTLNEXTTDLKTTTDRVSEAEARIAEAEEWSTDFREALSQSLQAQEKMQMKLTDLEARSRRNNVRIFGIS
EGAENNNIYQFIDNLIKKELDLVDIELRIQRCHRALGPRPPNEAQPRSVIVYFQEFKVKEMVLHTAWKKKEIFHNNSRIY
FDHDYPAETLTKRKAYSQIRRILKEKGIRFQTPPPAKLRVFFDGGPITYGSADEATEDMKKRGFQFGRETSSEVEVLSKA
RTTGWQRSTNTTNRQTRQDWIKERLRNFRRPR
>L1-14_Mad_pol#LINE/L1 1871-5434 via tfasty with 6598399_Ath_pol, 13 frameshifts and 6 stopcodons. [Malus x domestica]
MDRLRLKLNFDRSFTVDSRGSSGGLCVLWKDEINLCLRSYSQNHVDFDVGVPGDTDYWRFTAFYGFPATCDRYKSWRLLE
SLAGNESKPWLCIGDFNEILQANEQEGGNVRQDRQMEGFENAVEHCRLMDLGFSGNKFTWFTTKGGGIKVRLDRALGNQE
WMDLFPRFKVQHLNKTSSIMCRSAxLVGTHSNPREEAVSLxGMLAYAEGxRVRDGWNHGGARQCSRLRENxDDEDEAQxL
GSSNARSGPREIREVEDKLTSLLGQPFTDESIEQKNELIGKLNRLLEQEEQFWRQRSKENWVKLGDRNTKYFHQKANRRQ
KRNCLYGLMDDNGVWREDRRGMEEVVVSYFTNAFSSNGVENFDDILCHIAQVTEEMNTSLDSPFTDEEIKCAVFQMHPDE
SPGPDGMSPGFYQKHWGVVVRMCVMGFGPCSYLVILRKINYTHVTLIPKVKDATMMTQLRPISLCNVLYKIVAKVLTNRL
KVILPHVISPTQSAFVPGRLISDNYLVAAEVAHYMHKRSRVSNGLMALKLDISKAYDRVEWKFLEAMMHRLGFSDRWIRM
VMLCVTTVTYSFKLNGDPVGYVHPERGIRQGDPLSPYLFVMCAEGLSALLTRAELDGDLQGIKVCRAAPSIHHLFFADDS
FLFARGTVGECQNIKQCVAKYGVASGQAVNFEKSCVSFSPNLTSYDKQLLADCLGMRRVDFHDKYLGLPVLVRKSKKEIF
AYVKDRVWKKLQSWRGGLLSSAGRELLVKTVAQALPMYSMQCFLLPKSFCEELNMMIAKFWWSGDPGKRKIHWLNWRRLC
KPKHEGGLGFRDLYAFNLALLAKQAWRFLHDPEALVYRVFKARYFPTTDFLEARVTSNSSYAWRSIAASRPVLQKGLRWQ
VGNGKKVRIWKDNWVPRESCFRILTPPPVHWDVEATVEGLFWTESKQWNVQLLNELFSQEEVELIRGIPLSLRDIADRRI
WHYERHGKFTVRSAYHVARGLMSLVGKGQRLSSSSSMWGEVMEEAVDACVPGKVKICAWRACLDSLPTRLNLCKRRVTIE
EVCVVCGGQVESTEHVLRDCNVAVWFRGLGKEWNGQGVSFMNWLANLQLQGPTSGFELCLMLVWSLWKHRNEVLWNGKSL
PRMRLCFEPRVGCRSFTSGISQRQEGYREVQKWRKPAEGWVKCNFDGAWSQRGTGEVLGWxFVITWGSFLL
>L1-14_GM_pol#LINE/L1 1351-4704  [Glycine max]
MIISWNVRGLNNVGKLKEIGSRLLELRPTITILIETRVKQVKARNIRNKLRLQGEFLDNYSSHSNGRIWLNWDTNKVTIK
YIRETSQLLHCGVYDLTGNFLYWITAIYALNKLDQRRTLWTDIECIHGNQHGPWVLLGDFNNVLKAKDRVGGNLVTESEY
EDLAKMMRNTGTFEKDSTGDYYTWSNKQTDGMIYSRIDRVLGNVEWFQDNMDTMLQILPPSVSDHALLCLADPGNTAGRQ
FHFKFSNCLTDLEEYHSTVSNSWNEPLNGRPMYVLWEKLKRLKPALNKINRPLHHIQSRIMEARQNLQHAQQSLVEDRWN
SSKIDTVKRYTEEVINWNSLEEKTLQQKSKIDWLRLGDGNNSYFHATIKAKKSSKRLNLLHKDDGTVITSHDEIQDEVLN
FYEGLMGTKDGNVRHINIMAMRGGPQLSMEQREQLVAPITDQEIRKALNGIGDTKSPGIDGFGAKFFKTSWNIIGKDVVA
AVRDFFENDRIYKAFNCTLVTLIPKNEEAKTIKEYRPIAGCTTVYKIISKIITARMGRVMDSIVGKNQAAFVPGQKIHNH
ILLAYELIKGYSRKGGTPRCMMQIDLQKAYDMVNWDALECILKEIGVPQQFIRWIMIAVTTVSYRFNVNGCHSNLLQAKR
GLRQGDPMSPLLFVIVMEYLNRILYDMQKNPNFNHHAKCEKLSITNLAFADDLLLFSRGDPISVDLMVKAFKNFSESTGL
IANPSKCKIYFGGVGDDSKRNILNLTGFTEGPLPFRYLGVPLTSKKLSIHHYMPLVDKIVGRINHWSTNLLTYAGRVQLI
RSVTFAIANYWMQCFPIPKYVVHKIEAICRSFLWTGGQEIKRKSPVAWDSVCKPKDYGGLNIIDLSVWNKVTMLKLLWNL
SGKSDSLWVKWVNAYYLNKDTLMNVSVKIHNSWIMKSILKHRSSILDIQSIWDSMLEKNRFGMKEVYKSLCTNTSKVRWR
NLFRGNTARPRALMTLWLACHGRLATKNRLKKFGMIEDSKCCFCPAEESINHLFYGCPELKIIWTKVLDWVQIKRVPREW
NDELEWLISSTKGKGKRHAILKLAAAETLYGIWRYRNDKSFGNTVDNTKIADNIIDMIVYRGWYSGYLRDHIANLMMG
>L1-22_XT_pol#LINE/L1 1915-5703  [Xenopus (silurana) tropicalis]
MARPLSILSWNVRGLNDQIKRKLVLDYVKKQIPEVIMLQETHLQGSKTLALKRPWVGWAFHSTFSTYTGGVTTLIKRTAN
FKLLTLQSDPQGRFLFIHCYLNMVETILANIYIPPPYIDNCITQLATFIATHPHARVIAAGDFNTVLDEQLDRLRKQNLP
GLNKPSNLHTHMKNLGLTEIWRHTHPSETGFSCFSTSHMVLSRIDMAFISKDLLLNIQSATYLARGISDHAPLQLLWNSG
YPPQRQNKPWSLNPVWLNIINNDQGLAASIKEFFQINLTDNNIDIAWEAFKAYLRGLLHSEITAIKRASTKEETEIEQQI
QNITAQLQVNPSHQKLQSLRQLEATYNNCLQQKARRSLLFNRANFFEHSERAGKLLAYLAKTSESPPIITELYNTQGQLV
TQTEQIKETLHNFYQNLYTSKQRNTREEINQFLTEITLPTLPQEFNETLIQDITETEIYEAIKAFPPRKAAGSDGLPIEI
YQRFHKELTPHLTKLYNNALTAGTLPPSLYNATIVLLSKPGKDPKYSDSYRPISLLTTDIKILAKVLANRLGKVILQLVH
EDQTGFMPGKSTALNIRRLYTNLTYPHNNTGQRTIVALDIAKAFDTVEWSYLWLVMEKFGIGQKYINMVKLLYKSPNASI
RINGELTLPLALGRGTRQGCPLSPLLFALAMEPFAQHIRSHPTIKGLKIGPIEERIQLYADDTLLYIGDRGNSIQSAMAT
IHRFGCNSGLITNNSKSMALLIDPPGASEDLSTFPFKIVPQLTYLGVNIALPITSYTSINIDPMINWLQSKLKTWSSLPL
GPMGRIHLIKMLVLPKLLYTLQQSPTWVPRINFVKLNSLFRQLIWANSRCRLKLDTLMRSKSNAGTSFPDMYLYYIAAQL
SHLITWLEHSNHLTLKNIWAQITGLPTHPIGWLLGKPTKCAHNSTISPILVNICRIWKAATQIVRDKGVDPRTPIWFNSM
YPTLTGTGHMKLWLDKGVETIGDVWTDNGTVPFRTLRQXWDIPNNQWLQYNRIKKALQLAHKKEPIVICKNRLLSHINRP
STKGLISILYALLLQESRAKPLENLRSRWEMDTEIILDDEWQEAQESHQTVSVCYRLRMIQLYTIHRAYYTPTRLHSIYP
AIPDTCTRCNIEKGTLIHMLWXCXHIKPYWSAILDELDTXIQSTLPRTPKVCLLNVLSKAVTNQYHRILTSEALFLAKKL
ITQHWKSTVPPDIXNWENLMAETCKLEQLIYLKRGSPTKFHKIWDQWLDRHPLPPPPNAVNDQ
>L1-45_XT_pol#LINE/L1 1646-5446  [Xenopus (silurana) tropicalis]
MVKLLTLNVNGLNSVFKRYLAIREIHRLKPDIALLQETHFRRSDDSTLKSNLYPKVFQASAEAKKAGVLIMIHKDCPYQV
SKVTADQGGRYLILDGSLRDKPLTIMNIYAPNKGQQKFLRSKLTKGRGNCQTPIIIGGDFNLVFSDLKDRSLPPVNKEIS
EQSKKFRQMVRKLDLRDIWRIHHPNERTYTFFSARHNLYTRLDYFLISRDLLHFTATSSILPITWTDHDAVTFEIEITHQ
SKRKPHWRLNEALLNDLTANKKTLETITEYFAINKHSIDSMATLWEAHKAVLRGHFISTTSYKRKMRIKQITRLEHDLTY
WEKLYHRSPSQQLKQQITQARRDLKKLLLADTEKALRWLKQKYYESGDKPHTLLAKKLREQLAQSAMLSIDAGNGQLVYA
PEEIAEVFRHYYTALYNLHTQQRPDEQQRLTFLKDNIKVKLTQPELNTLNTPITEEEIATTIKSFPTMKAPGPDGFPYAY
YKAFSATLTPYLSTLFNSFLEGSPIPPTMLASYITLLHKEGKDPNQCASYRPIALLNSDLKLFTKILANRLAPIMPRLIN
LDQVGFIHGRQAGDNTRRAIDIIDTLNKAQTPAVILSLDAEKAFDRLDWRFLFDLLQLMGFKGQFLTAIKALYSNPTATL
KMPDASNLPIPILNGTRQGCPLSPLLYALSIEPLATAIREHKDITGPRVGNHEFLISLFADDVLLTVTNPMISLPNLHNL
LAQYGKHSGYKLNIQKTEALAINMPSHTRELLKSNYKYKWKDISLKYLGVHLTKSYSQLYKCNYTPLLQTIHNLMNKWSP
YTISWLGKIAALKMMILPKLLYLFETLPVRVPNTILRNIQTMFFKFIWGKSRHRVMMTGRSQGGLAVPNIIRYYEAAHLR
QVLGWTTFTPTSKWALIESLTLTPTHPNSFLWQTQKSIKPPPDTLQAIRFTLQIWNRCCKKTHLRGPLGILRPVLANPQF
PPGLSQTFQKHWGSKNLFRAYDFINPLTNKLYSFIELQRKHQIPQSWLFEYMQIIHFIQGPDTRLTPPTPLTLFERLSVR
GLPQKALISNIYSILNTIMGDPFPKHKYMTNWEAELSTTLTLDQWEDIWENARKNVTCVRQKESVYKMILNWYHTPVKLN
KIFPDTSKMCWRACGQEGTLLHIMWHCPKLAEFWKNIKNTAAKIFFWEIPIEATNALLGLPHPHIPHSEQKLLNYIYTAA
RLTITSKWKSLEPPSTREVISRLKTMKNLEEMTAKLRGTTPQHDKTWSKWDYFISQNQITQRYRPMQ
>L1-45_XT_gag#LINE/L1 147-1208  [Xenopus (silurana) tropicalis]
MGKRKNKEQAGTMSPFLQKTPAATQHEIQNGADGSDIEQQLGSQTSSPLHSGSDNGATGDLPPQGQAHQTTPTDMVTVQV
LTQQLTQLHDRLTETITVSICTALKDIHADINALGERTDKLETTMDELILRHNILEDNNATLREELSALRAHTEDLENRS
RRQNLRIRGISEEVSPQDIRAFLRSLFSTINPDLPAEAWRFDRAHRTLAPRLPGATRPRDVVVCLHYYESKESILNKTRN
TSHIEHQGHKLQIFNDISPITLKKRRDMRPVTQALRTHNIPYRWGFPFKLTATKGNRQYVLQDPEDGSRFLKDMGIPDQP
QEPQPGTSRQQDRLSPAWTKVGSPSFKNTQPANT
>L1-47_XT_gag#LINE/L1 137-1246  [Xenopus (silurana) tropicalis]
MGKRKPKETAGTMSPYINKYSSIDKHAVSQDGGEQEDELTQVPNSPATASEGNSNSPPSSIQQVKDSRPQYTADDTDPVT
EKVLTQHLNTLHNALTATITDTVAQALAGVKAEIAELGDRTDKVETVVDDLVTGHNNLMEENKTLRTELNQIKLLCEDLE
NRNRRSNIRIRGIPEAVKQTDLKAYLRNLFSTLVPELPPEAWRLDRAHRALGTPQTNSKLPKDVITKLHYFESKDRVMTA
TRMRQTIEHQGATLQLYNDISSITLAKRRALRPLTQQLRDNKILYRWGYPFKLIINKDSRQYTLSDISQSGRLLTALGIT
ETLPATSPPSSPRRDVIQTIWEKSTTKKATNTNKPTSPIGIGNPYDLLAT
>L1-59_XT_pol#LINE/L1 1205-4834  [Xenopus (silurana) tropicalis]
MMALKVITHNARGLNSPRKRRQAFQWYERLHPDVICIQETHFTKTSHPQFFHRQYTRFYLASTPQKKHRGVAILLHNKLP
VIITNTESDKEGQFISIMGTLYEKTIRITATYAPNDNPKAFFNRTAKKLTQTPVNIDIWCGDFNFPFNPVMDKSNSTHLA
KDIRAAMATQDILNTKHYIDTWRELHPKTREYTYYSAPHMQYSRIDTILINSLATPTLKETYIKPCVWSDHDSVAISLQV
IDIPKKSTQWRLNENLLSDPQLIIDSKIALNNYFRENTTPEITADIIWAAHKATIRGYFIQQAAKKQRKARETQNRLEKS
LQILENQNQTKYSHQATKRIKAIKQELDALQKHKVDKAIRWTNFKYYKYCNKPDRFLANTLKDKTQINQIPGIKTTQGDI
TSNPEKIRDTFLEFYRKLYTQSHKPPKKIISKFLAQHPLPTLTKIELDRLNGDITLEDIGEAIKTLKSDKAPGPDGLSAG
YYKKFSEILIPQLKTLFDYIAQGKTITPELLAAHITLIPKPNKDPLHPKHYRPISLLNLDLKILTSILAKRLSALLPRII
HKDQVGFIPYRQAGDNIRKILNIIHQANKTNTQMGILALDIEKAFDSLNWDYLEAVMQSIGIQGPFTKIIQTYYSTPTAT
LKLPTSTQQTIEIQKGTRQGCPLSPALFALAMEPLAIAIRQHQSIKGVEMAGADQKISLFADDLLLTIMNPLISLPNLLK
LIQEFTQVSGLKINQDKSEFLPCNIPKNTVKLIELNFEFQIREKYLPYLGINLTPTLDTMYTRNYTPLYRNLVLELQGWN
KKQISWVGRINCVKMMTLPKILYYFRTLPIAIKQTDLQKFQRTIMTFIWANKRPRINKKIMYLHKSKGGLGVPNLQQYYR
AARCAQITALHGGKLTPLWAEMESALIHPTSLTSLIWNPSQDTKLHKDLSPITRQMLQLWTTLRYKYRLASNPSRLTPIW
GNNLFAPGYNNNLFQWWKQQGIIYVYQLTDGIKPLQPTQIIQKYKVPITEHYRTIQIAHFVQQLWGKVTIQNTQMETICE
KTPMGRKTLSMLYYQLNHTHTNNKLQCMKDWEHDLGIQLPQEIWLKNYQNICKGSYNVTIMETSLKLFHRTYYVPERLSR
IYPTSSPLCFRKCTARGTMWHIWWTCPVAQELWTKVAGILSKIFYTNITPCPKVMLLGHKLQNLNNPAQRLTQHICMAAR
IHIAAQWKSN
>L1-57_XT_pol#LINE/L1 1617-5432  L1-58_XT_pol about 90% identical. [Xenopus (silurana) tropicalis]
MQLHIVSINAKGLNSPEKRKTVLNWARDSKIDILCLQETHFKAHSHTIFKSAFYTEAFYANAPVKKNGVAILIRNSIPIS
VKETFQDPKGRFLLLNFELYAHKYSILNIYAPNARQVKFVNKALKLLPDAFLDHRQVIVLGDFNIAPDPYLDKFPIPRGQ
ALRTPLNLAKGLKQAIKKYALYDAWRAAHPAEKDFTYFSHVHLSHSRIDLILLDPFLLQNMDKVYIGIATWSDHAPVGLR
LNLSAVPSPNISWKLNNSILSNPKNLEYLTKLTEDFKSFNPSSDYSPDLLWCTYKAFIRGHIISLTSEQKKKRQKILFEL
NAQLSTELSQLKKKPTEANSQKVTMLKRKINDINAEKMAYQLLILKQKYYSDDNKCGRLLTNKLREARAKTRIEAIKTKD
GKTLTNPTQIAQEFANYYSTLYNLSKDPHTAQPTQTNIENFLASLSLPTLTQQHKDTLSQPFSANEVLQAIKILKNNKAP
GPDGFSNNFYKKLVSSISPLLTQLFNNLSTNRSPRSELFQATITTIPKPGKDPNLVTNYRPISLLNSDIKIYAKILATRL
NPLLKTLIVNDQVGFVPSRQAPDNTRKIINIALHANSNKIPCLLLSLDAEKAFDRVAWPYLKAVLIKFGFPDFFLNSTLA
LYTKPSAKILTNGFNSAPFFLTNGTRQGCPLSPLIFALIMEPLAETIRNSPLIQGYTIGTHVCKTSLFADDVIITMTDPI
NSLPALFQILQQFSLVSYYKINTTKTEALPIWVPNHTLVKLKSLYKFEWQQSSIKYLGIHVSFSVKNLYKDNFAPMFSKF
QKLTQDWMYKDISWLGRLAAIKCNLLPKILYLFRTIPIHIPAKFFTSLQGLLTKFIWQKRKPRIAYSTMSNSKRNGGLAL
PNLKKYYQACHLNFLQRFFDTINPPQWLSQEFSATPTTGTPITSAIWIPPKLRQGKQDYLPTTEASLKIWDSLIHNDNLK
NGLYPHFPIVGFQQLIDNLNLNAWMQTNITAFADLFQKSIYQPFSYLRSKFKVPNTTFLTYLQLSSYLKTNSLQKLKALS
TDQERLFNLLKHPSKISQYYALLLEMNPQEISSYMKKWESEINTAIEPIDWNKAFSTLFSSISSIRLLETSVKLMYRWYM
TPARLYRIFPATASNKCWRNCNQIGTLTHIWWDCPVISQFWLTIFPILSELFRIDIPISPRLALLNLDLDHIPWNKKRLL
IHILAATRLLIARCWKSTTTPSLKEVTIILNNHSILEYFNARNNHLLHKYHAKWDLWNNSKYVGENPIRNFL
>L1-41_XT_pol#LINE/L1 716-4531  [Xenopus (silurana) tropicalis]
MWQPTKPKVGTFKISSINANGLNSPQKRILLSSDLQKHKANVAFIQETHFKEGSTPRWNNRHFPDIYTSKPQPTKVRGVA
IVLSQNFGFTLADQGRYIFIKGTYMNRMYTFANIYLPNTEQATELTSIIDTLQTFAEGTLVAGGDFNIPLDPKLDCSTGH
SSIPHKQIARCKQLLHSIQLIDPWRIFYPRERDYSFYSHRYNQYSRIDYIFISHHFLHEVIKSEILTRTWSDHSMTTLTL
QTPLPNTKHNTWRLNEALLRDGDIREDLANQITNYFKENSNPDTTPLTCWEAHKCVIRGHLIKHGARRKKEKEKTRSDLI
KQIQQLERTHKDTHSDQILLQLTEARKNLANNLNYFTQKAITVFRHKLYEHGDKCGRLLARVLKQKQNQNYIPSIKLKNG
NTAYITEQILNTFETFYSDLYQLPDESTNTQSDFKKRLSEFLTSSHMKRIQTIDTDILDSNITTEELETALKTTPTGKAP
GPDGYTTLYYKTFKDKLLPHMLKAFQDIQTGSRFSKQSLEAHISLILKPGKNPQEPGSYRPISLINGDVKLLAKILSNRI
KNILHKIIDPEQVGFTPGREGRDNTNRLINILYMAKKQNSKLMLLSTDAEKAFDRVNWTYMFTCLQHIGLGPKIIQWIQA
LYNNPHARIRVNGALSNHINIQNGTRQGCPLSPSLFIIALEPFLCHVRLNPDIRGITIANRHHKIAAYADDLLFFITQPI
ISIPTLNQLLINFGYLSNFKINFTKSMALNISLTPQTIQALSQKFPYKWASHTITYLGIKISKDYETWTLNNLKNLLSSI
KKDLDNWLNKPLSWFGRMNVIKMNIIPRILYIFQTLPLHIPESIFDSIQATITRFIWQGKKPRLRYKTLTKDRTQGGATL
PDCRLYYLASVLGRIIDWSHHADTKLWIAIEQQATYSYLIHLPWLDKRYRRIRYTDHPLLTNTLAIWDRCRLKYKLTQFP
SPLLPLINNPAFPTGQQPNYFTHWLIEDNLQLLHFMDKGEFIDKRKFQAIKPFSNMDHLKYAQIKHYYQSLGGTSTLGRP
LSPFETLNAMSLPPTHTISQLYKNLRQSHAFTKPGFLESWSRDTGIQFQEEQLSNLMNKLLKSSRCSRIQETNYKIVTRW
YYTPSKLKLIYKHTSDTCWRCNKEKGSLLHIFWTCPLIQPFWENVRKAIHHITNIEIPNAPEYVLLFHIDKPLSSFRNSL
EPHLLNAAKILIPQRWKQTATPTLQDWYRKIEEIHRFEERSLSSPENYDTYSTIWFRWLSFKESDFYKQSIS
>L1-26_ACar_pol#LINE/L1 2209-5967  [Anolis carolinensis]
MESEITQQLRIYTNNVNGRNSPQKRKSTLTQINKGKYDLVALQETHICQKHVAHLKNDKLGKEFFSADSVKKRGVVIYVK
ENIPAEMKFKDTEGRVIAVEIMLNQEKILICNIYAPNGPKTKFVNNLREQILKTDVEHIIILGDFNGVIDHDLDKSKKKN
RKTKGKMGQLPKNFLNLKKELDLQDVWRNKNTNKRDFTYYSNRHESWSRIDMIWTSNSLTSKVDKINILPRDKSDHCPLE
MIINYKRNHWRWRLDDNLIKSEKAILENRKLTKEFFNFNDKENVTKQTIWDSYKAVMRGYFIQQKARANKVRNYKIEQIN
KQIENKEKIFKQQPKNQKIKKEINDLKKEKHHLDLEKIAKSLKYVRQDNFENANKPGPWLARKIRKKKQQQHIIKIRDKD
KEYTTDEEIREEFRNYYSQLYKQKEEDLEKITKYLGEQKLDKITETEREHLNKEITEEEIKKAIKNLKPNKAPGPDGFTA
SFYKVMKDELIPFLKILMNQVLEKNIIPESWKEGDIITIHKEDTDKSEVKNYRPITLLNLDYKIFTNILANRFKNFLTTW
IGPEQKGFLPGRHMKENVRTIVDVIEFYETHHQKELALLSIDAEKAFDNLNWRFIKLLFKEIDIGYQFYNAIETIYTEQR
ARILVNGQYTKEIPINKGTRQGCPLSPLIFIFAIEILIRNIRKDDQLKGTKIENYEFKMRAFADDLICIIENPKHQIQKW
LDRIEEYGSVAGFYLNKKKTKIMTKNIPKKRQEEIEKVANIQIIPKIKYLGIWLTAKNAHLLKNNYQMKWNEIKKDLQNW
KNLKISILGRISIIKMNVLPKLLYLFQNLPIIRNNKLFMEWQREITKFIWKGKKARINYTIMTDDKRRGGFGLPNLKLYY
ESCALAWVKDWATLEKNSMLALEGFDLRRGWHSYLWYGKRSVEKNFGNHFIRSSLIKTWEKYKGRIYTKTPLWISPLEAN
QKKFLDWTKWPKYKEILRKKDGQFQLKQQEEIRQKYNKMSWFQYAQLKEQFGKDKKLGFNETENFWDTMMQSSKKEIARI
YKKLLEWSTEIEYVKICATKWAKNIGRSIMMSEWEAIWNIKQKYTYASDLQENWLKMFHRWHITPKKIATMYKNTDNKCW
KCKKQEGSYFHIWWTCSETKSFWKAVHEETQKILQKSFPMKPEFYLLGLTESIMKLNSNEDKIFTYAATAARITFAKYWK
QREIPTNQHWLEKLNEIYDMDKLTYLMKINRGNTIKSTNWEKYVEYKEKAKEK
>L1-25_XT_gag#LINE/L1 131-961  [Xenopus (silurana) tropicalis]
MGKHTTKSKSENRLERYLQTSQETDKAADADPPSPVPEASLSTTQLETIKVDISLLRHDFQNLRERTIEAERRISAVEDT
LQPLPNDLVRLREQVLTLTNRAEDLENRNRRNNVRILGLPEKSEGNRPEAFAETWLRDNLGPDTFSQLLTIERAHRIPTR
PLPPGANPRPFIMRFLNFRDRDAALLAARQKGPLTWNGNAISLYPDYSPAVQKQRASFQGIKKRLRDAGIVYSMLYPAKL
RIVAEGATHFFLSPNDADQWLNTQRRQGSPRNSPNRR
>L1-27_ACar_pol#LINE/L1 2357-6103  [Anolis carolinensis]
MQVKCHSNNVNGLNAPNKRKNLFNHLQKLKFDLIALQETHICHKHTSYLIQGKLGKEFIASAAEKKKGVVLYINPKLNPE
LAFKDEEGRMVGAKIKVGNQTLLICNIYAPNGPKTAFLRKLKGKIAEQEFDELIILGDFNGVPDPEWDKKGNRSKEKRNG
NLGKLPVGFIKFLQDWELRDAWRMQHVREKDYTYFSNRHNSWSRIDMAWMTPSLILKVTKIEISPRYISDHCPLEFTLNK
TQRNTNWRLNGNLIKSEEDIQKNKEILREYFNLNDNGETTIQTIWDASKAVMRGHFIQQSAQKHRTKNRLITEINEEISS
NEKKLKSEPNNKKIKQELGNLKAQKIHMELEETAKRLKFIKQQQFQNANKPGKWLAWKIRKKKQAHTITEIIADGVSYTT
EQSIMSQFKIFYGNLYSKDQIGIDKVSQFISNQRLGKISEKQREILNKEITDKEIKTAISKLNGNKAPGPDGLNGIYYKV
FAEELTPYLKKVMNKILEDQEVPDSWRKATITMIPKEGQDPKNVKNYRPISLLNSDYKIFTTILAERMKEFLNDWIGEEQ
TGFLAKRQMKDNVREIINILEYYEFTKKDELALLTIDMEKAFDNLNWDFFKLLISELDMGYKFKNAINQIYDKQEANIKI
NSLDSQNFKICKGTRQGCPLSPLLFIFSLEILLRNIREDPRLKGAKIRKYNYKFRAFADDLICIIDDPINTVQFWLXKIK
EFGEVSGLRINSEKTMLLPKNLTKSRQEELVKVSGIQVRKKIKYLGIILTARNSQLLENNYDYKWKEIKKDLERWKYANL
SLLGRISVIKMTILPKLLFLFQNIPIIRSTQRFRNWNKEITKFIWGGKKPRIKRIYMIDDKKRGGLGLPDLQLYHDACGL
VWVKDWSTLGNNRIITLEGIGLRAGWHAYLWYGKKLTEKNFGNHFIRSSLLKIWEKYKNKLYQKTPRWISPLEACQRRET
GGEIWPRYNDILIKENGRYTLKSQEEINNKFGKVGWFQYIQLKEYYNKDKILGFEEKETFWDKIMKLEKKQISIIYTKLL
EWETETVPIKENMIKWAQNLGETIYLGEWEKAWNSRLKLTYAIELKENWIKMFHRWYLTPQRIANFNNKNSNKCWKCKDQ
VGTFFHCWWTCKEAKSYWKKIQQEIQKMLQINIELNPKYFLLGMLDIKSDKNKEILFSYLTTAARIVYASYWKKKETPKL
SCWLNKVLEIMNMDKLTYLLKNNYGIPKKQTNWDAIKKYLRERQMRVLI
>L1-38_XT_gag#LINE/L1 136-1140  [Xenopus (silurana) tropicalis]
MTRGSKAKKAQPQGKIPGTPHRRPTSSHNDNMADGANSSPTASPQSEQESPPADSDPETQLQYSGDSILISKFKRLLQTE
LNTVAAKITDHVTQEIRDLGQRTAAIEDKVDDLISKTAEHDIQLAQLKRQLTDMQDNLEDQENRSRRNNIRIRGLPDVIQ
NLQEEIPQLLKSIVPDITDSQLLMDRVHRALGPRREGAPPKDIIARLHYYSTKEAIMSASRAASHLEYKGHQYSIYADLA
ALTIQKRKLMKPVLTILTSHRIRYRWGYPFKLTFMFQNRPYSATTAQEGLELLTRLKLQQPTPTTPNTTPRKSSSERSIS
PLWRKSPMAQRSLNH
>L1-33_XT_pol#LINE/L1 1631-5380  [Xenopus (silurana) tropicalis]
MAVNVISWNVRGLNNPIKRKLVLDHLKRNNVHIALLQETHLVGSKTMALKRPWIGWAYHSSYSVYSAGVSILIHKQVPFK
LENLSIDQKGQFIFLHCKIGQHELIIANVYIPPPYSDNSIKLWADYSAKYPHALNLLAGDFNTVLTPEVDRLRRVGANTV
EPATNLGHLMEELSMTEVWRHQHPHEKQFSCFSASHLVLSRLDMMFANASLLPKITQTKYLPRGISDHAPMLAVLSIINP
PAATRWSINPVWFHILRNQTELDEEILEFFQVNNGTADTLTVWETFKAYVRGTLNSQIKAHKKKTRAAVVETESKIEQME
CQATQNPTESNLKLLQQWQEIYAKQQWEISQHKLFFSKINTFVHGERAGKLLAYMVKNQSSPPAITMLKDNNGQAQSDPE
MVKDILSSFYKDLYSSKLLASQENIKNYLAALKLPKLNQDYKAFLELPITTEEIADAIDSFPLGKAPGADGIPIELYKRH
SKTLSPMLQKVYAEALRVGTLPPSMYEAAIALLAKPGKDPQLSESYRPISLLTADVKILAKTLAKRLAQVIKYLVGEDQT
GFIPEKTTALNLRRLFLNMSITHTNSNTRAVAALDIAKAFDTVEWPFLWEVLNANGIGPNFIAYVKLLYNKPTAALRVNS
DLTKPFDLSRGTRQGCPLSPLLFALAIEPFAQAVRQHPQLVGLEVANRLEKIQLYADDTLVYLGDRGPSLDTLISLTTQF
ARVSGLCVSPSKSVLFLLDPPRQGENLEKCPLQVVQEFTYLGIRIANPLSMYYDLNIRPLLTWVQTKAEAWATLPLGPMG
RIQLTKMIITPKIQYALWHSPIWVTKKFFNALDKILKQFIWGKSRSRLAVETLQLPQGSGGLAFPNMSLYFLSAQLSHCR
QMVEHTAEKSIYHLWSAVTPTQPTPFRGLLAKGPTVKGTKNNSLLALHQKVWQTAHQMMNNRVMHPQTPIFSNLEFPSLR
ASQPHPVWLEQDVCTVGNVWGRKGMIQFRTLQLEYGLPXSQWLMYNGIATALRKRNSTQRIKIGISDIAMAITEGKCKGL
ISNLYKKLXKQKVQANTIKALTKWEKDIPTLTDSQWQQALKTPAQVSLNYKYRLLQLYIIHRAYLTKSRLHRMDANISPI
CNRCGQEEGTLMHTLWSCTKLNAYWAEVLDTLSQLLQYPIPRSPEICLLGVTASLKLPIADLQFLQKVLFIARKGITRLW
KCSDPPKYYQWYSAVGDLCKVEKAAYTKNGTYNKYLAIWNKWKNAHNSMP
>HAL1-3a_ME_gag#LINE/L1 815-1846 (HAL1-3_ME_gag > 92% identical) [Macropus eugenii]
MRKNKCLPSEEDIKVKASVSKTSKINMQWSQAMEELKKDFENQVREVEEKLGREMREMQENHEKQVNSLLKETQKNAEEN
NTFKNRLTQMAKEVQKANEEKNALKSRISQMEKEVQKLTEENSSLKIRMEQMEANDFMRNQEITKQNQKNEKIEDNVKYL
IGKTTDLENRSRRDNLKIMGLPESHDQKKSLDIIFHEIIKENCPDILEPEGKINIERIHRSPPERDPKRETPRNIVAKFQ
SSQVKEKILQAARKKQFKYCGNTIRITQDLAASTLRDRRAWNMIFQKSKELGLKPRITYPAKLSIILQGKKWSFNEIEDF
QAFLMKRPELKRKFDFQTQESREA
>CIN4E_ZM_pol#LINE/L1 3122-6580 [Zea mays]
MWQCLFKWRNGYYPMNTNCCIFSWNVRGLNDPAKRESVRQTILSTHATSVCLQETKIMNWTNDLLKDTVGYKLAKQTAHL
PSIGASGGILIACDEDFFDITPVTYASTYSLSVRVSSRLEDVVWDLTAVYGPQQENEKMCFLSELCSISNLMKPEWLILG
DFNMIRRVGEKNKGAINKRVMRKFNQTIDALQLLELDLIGKKFTWSNEQDDPTMSRIDRLMATTEWHGLYPAANLQALCS
MTSDHSPLLMQGHSPCNFYKGFRFESYWVHIDGFKDVVQQAWTTTVNSSDAILRLHVKMVRTAKALKAWRRRTVGNIKVQ
LAIIKIVLTMLEKAQENRTLSSEELDFRRRLKIKILGLAGIQLSIARQHSRQTWVRLGDANTKFFHLMANHRKRKNFIRS
LNCGDCLLTSQEDKLQEAHRHFLEILGTRGGRTSVVRWENLGYSPFELSELDTMINDDEIRNAVMGMHSEKAPGPDGFIG
LFYKECFEVIREDLSKAINDFYHHKCKSLHLVNEANIVLLPKRENPDRIDLFRPISLINSCMKIITKIMATRLAPRMNEI
VSTTQNAFIQKRSIHDNFLYVQKVIKKLHKSKQAALFVKLDISKAFDSLNWAYLLDVLKALGFTQKWRDWIATILGSSSS
KIIINGQQTKEIKHMRGVRQGDPLSPFLFILAMDPLQRMIERAAHEGLLGQVLPNGAKFRCSLYADDAGVFVRADKLDLK
VLKRILEAFEWCSGLKINFEKTEIFPIRYPESLWSNLMEVFPGKYSNFPGKYLGLPLHFRNIKRIEFQPLIEKINKRLAG
WKGRLLSKAGRETLVKSVLTAQPIYLLTVFPAQKWLLKRIDKIRRNFLWKGENLDSCSGGHCLINWATTCLPKNKGGLGI
LDLERFARALRLRWLWLRWTNRDKAWTGLQLPCDKADVDLFNASTIVTIGDGKMADFWRSSWIQGQAPKNIAPTLFMKAK
RKNISVCQALTNNRWMHFCSPYTHEDEIKEFISLWQGINNTHKLNDFDDTILWRWTTDGSYSSSSAYKIQFTTNFCKIKI
SPIWKARIEPKCRFFAWTMLHNRILTADNLQKRGWPCNPICCLCNLSQETMPHLGKDCPFSVEVWNMILSWVNLSFLSGV
SNLGSLYDWWKRLRNRCCKESKKIFDGLIISF
>HAL1b#LINE/L1 715-1683 [Eutheria]
MAWQLCKHTTAKKREXKEERRHSMQKTDEEPSLEENITQGTEENSPRVLRAIEXLNKNMNSIKQELKDEMIKQQNEMKRE
IAELRKQIENQNNTITELINKLETARNRIDTAENRITDIEERLEIITVNAEGKDKEIKAIREKIIDMEDRQRRSNIRIIG
VPEVENPTNGTEKVFKDIIQENFPEMKEELNLQIERAHRVPGKIDTERSTPRHILVKLLNFKDKERILQASRQKKQVTYK
GEKIRLASDFSTATFNARRQWSNVYKVLRERKCDPRILYPAKLSFKYKGNRQTFSNMKELREYSTHEPFLKKLLDDEIQP
TKR
>L1-1_GM_pol#LINE/L1 1714-5052  [Glycine max]
MIIASWNIRGFNLPLKHHAMQSFLRCKEINVMAVLETKLNKASVEEIMRRKFGDWHFTHNFASHNAGRILILWKQDKIHL
SVLESNAQLIHCAIDCKTTAKRLQVSFIYGLHSIMARRSLWINLNSINANMNCPWLLIGDFNSILSPTDRFNGAEPNAYE
LQDFVDCYSDLGLGSINTHGPLYTWTNGRVWSKLDRALCNQAWFNSFGNSACEVMEFISISDHTPLVVTTELVVPRGNSP
FKFNNAIVDHPNFLRIVADGWKQNIHGCSMFKVCKKLKALKAPLKNLFKQEFSNISNRVELAEAEYNSVLNSLKQNPQDP
SLLALANRTRGQTIMLRKAESMKFAQLIKNKYLLQADKCSKFFHALIKRNRHSRFIAAIRLEDGHNTSSQDEIALAFVNH
FRNLFSAHELTQTPSISICNRGPKVPTDCFAALLCPTSKQEVWNVISVMDNNKAPGPDGFNVLFFKKAWNIIGDDIFAAV
NEFFTTGKILKQLNHAIIALIPKHDQASQVNHFRPISCCNLLYKIVSKILANRIAPVLETIIGETQTAFIKNRKMMDNIF
LVQEILRKYARKRSSPRCLLKIDLHKAYDSISWEFLDWMLKSIGFPAQFCTWIMECVSSTSFSVAVNGSIYGHFKGQRGL
RQGDPLSPYLFVLCLEYFSRDMSSLKDDANFKFHPNCASIQLSHLAFADDIMLLSRGDIPSVSTMFAKLQHFCRVSGLSI
SSDKSAIYSAGIRPHELSHIQQLTGFSLGDFPFRYLGVPLLSSRLNVCHYAPLLSKITGLIQGWSKKSLSYAGKLELIRA
VIQGIVNFWMGIFPLPQSVLDRINASCRNFLWGKADIGKNKPLVAWSVVCSPKKEGGLGLFNLKDWNLALLSRILWDFHC
KKDSLWVRWVHHYYFRGSDVWNYNTSSSDSVLIKKIIQIRDFIISKELSTEEAKKRIQSWSTNEQLLVGKVYEYIRGVKP
TVSWCSVIWNPAIPPKMSFILWLAKRNRLLTLDKVAFLNKGSLCPLCSNEPESNAHLFFSCRKSLQVWAHIRDLAPFRRR
FTSLQRITDSLIRGRSTSGVQGKLRCLAIAITVYCIWLSRNKLIFEDYQFSVIEVISKIKFLMYRQAHLLHLF
>L1-1_GM_gag#LINE/L1 239-1714  [Glycine max]
MGKNKGRQSHSAAKQIMVKGTTSGSGKSQTSATSGLAGCLDVVQANQNAYTASQDNLVGKVLVKKAGTSSAKTDDVAHQV
FDNLSECSAESESSPEVSCTLGDNDSTTDDDSSHSCGSKSSPQLDDNKAPTPWVNLFKDNRSPSKGFGMKFSPPPSDDEV
LLEETDLQPLEEAWGHSLIGYVAGRFPGKKALLDCCQKWGVKFSYSAHESGWLVFKFESEDDLNQVLSAGPYFIFQRPLL
LKVMPAFFDFGNEELSKIPVWVKLRNLPLELWNPQALGKILSKIGSPIRSDHLTASKGSISFARALVEVDASLELIDEVR
FRLPTGKTFVQKIEYENRPSFCTHCKMIGHRLTNCKTVTANKPVLITACPTLDQPQVGDSAMPPHTNTAGPSDNPKNVQT
NLSVPPHRKHVLVANHVPVLQNSSDLKETGNTELDDPIEEGFVQVKTKHQKKGKKVPLIKTTRIEDMQADVQRGRNHKAV
TRVEEASSRPNP
>ATLINE1_10A_pol#LINE/L1 1521-5630 gi|4582447|gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
MRIISWNCQGIGMPLTQSRLFRLFRMYNYDILFLVETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSL
ISQDERLIDSHVTFNNKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNF
RNMVSHCDIEDMRSKGDRFSWVGERHTHTVKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFNESFPRRSKLF
RFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIP
QLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFST
NGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSF
MKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHS
LKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPL
SPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKS
MITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALA
MPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNS
LFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMTI
NNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGS
IDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQ
LMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSP
TRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRG
YTQVFMEGDCQTLINLINGISFHSSLANHLEDISFWANKFASIQFGFIRKKGNKLAHVLAKYGCTYSTFYSDSGSLPIWL
DRYFCNDSN
>37700336_Osa_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MGPVGMRPYGRSRCDLLRPSLTQSAISFIPSREPSRPSYAAMAATDPPRRNQQRPLANHPPQQQINRTNSQEHHGGLVAQ
RGRSTQQGGWGAHGGRVDHRDQSSRGAHGGWDAPPNQGGHGALPSYRNNKGGRPGFGQRPQGRNFRPGFQGHGRDEQPRR
DAGNQGVPVHQALTESTGKQDIQAGRGETAALSSKNSVEVTMAKAKKPRPVHCFRCKGSGHLLDGCKTVLDCFICNKKDA
HVPNRCPILKEPKPTAALFGFSEQNMGFLRIQEFDMKLEPPKPAPTALVTILDGHLAASAVQNELARLIRADWNWKAVPH
GDNSYLVTFPSEEELNRMDDVEFRLKNHGVSITIQQWQQDSDIIPVYQLDEVWVHITGVPHSWRHYLCFWALGTVVGTTQ
EVDMLTFRKKGIIRIKVGVLSRADLPIKTDIVFGKIGYRITFSLEEEGF
>31431557_Osa_pol#LINE/L1 gi|31431557|gb|AAP53315.1| putative reverse transcriptase [Oryza sativa]
MANKSMSGIHQIKTSFEFTRSAVAPTASFRVNRKVSCKDLGENHFLFTFHQASGKRRALEDGPWMFNKDLVVMIDLDETK
LIEDMIFAFVPIWVRAMKLPLGLMTKETGMAIGREVGEFMTMDLEEDGSAVGQFLRIKIRIDIRKPLMRGVTLFVGADER
PLWCPLVYEFLPDFCYICGIVGHTEKLCEKKLAEGEAPLFNKSLRFIPERKIWEGGSSDKTSGSRFQVQRKSGASSCKGS
DAPSWQKEITDGSKGKEKGTQGEDEVTSPLKKGFPAERSDRPKKSLFQSKKGAAVEATKKGEAGKQVDSAMQAMHIDSVP
DEGLVDGGASGVVMKKTFKRIPREERGAKNGHPKLTKPEKGGPEEGVGGKRRRSAGGGDEGEKPTKKAGLAIQPCLYGDA
HSETKHRTWTTMRGLIDNPTTPWLMAGDFNEILFSHEKQCGRMKAQSAMDEFRHALTDCGLDDLGFEGDAFTWRNHSHSQ
EGYIREWLDRAVANPEWRAMFPAARVINGDPRHSDHRPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAWD
VSAGLQGLLVHASLAGVAAGLSSWSSNVLGDLEKRLKKVKKELETCRRQPISRDQVVREEVLRYRLEKLEQQNLLDVVDR
KVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPAGFYKACWDVVGEKVTVEVLEVLRGGAIPEGWNDTTIVLIPK
VLANRLKKILPDVISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFH
TDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHL
LFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGR
SRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWL
SWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQ
NGMIWRVGDGSKINIWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEMED
VLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHR
GMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLEELRSMLEQQTSGKNVLQSIYCRPENERTSAIVCLWQWWKERN
EEKSPRTGECAVWRRPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTASE
RGMSRIELETDSMMLRYSPRSCNKVAHELAAYGCNLQTVSSWAGCPPGLERLVSSDSAGLDQKIVEGDS
>47825035_Sde_pol#LINE/L1 gi|47825035|gb|AAT38805.1| hypothetical protein PGEC747E24.5 [Solanum demissum]
MDKATSTKSRPTIAKLRVELDLAKPRIREVVVEIRNAEGGLEMFTQKVEYEDLPEFCSHCITQGHTNDKCRVVLQRNQSK
KVQVTKEAILKGRKAKDRLKTTDNNQQRLLKRLHPITKQLFLKQRKSKMKTKDGSEPQIEGEQTLINTIRDHIKSINNKR
EIAKQHKAKVQKERMGTRKNKNLKIADLSKLQEEQQRDAESQINMNVNTTRESSRKRKPTAKGKDGEVVKPNFGLDPDLA
DKIVGNKVKEKKLNSYKQNNSVSIQILDPGDKAVENQNNTWDEDLEMTQVGIEGSKSDDDIAKGYDKTIDFVDYNKTRQV
QQAVTFYNNLSPRGIYESKGSVDISLRIGSMGSLERLNFMKQQYNLRMIILQEPMVGPEKIDVFRRKLGYNYCFKNINNK
IWIFWSDQVNVNLVQNKEQQGTYVTHLSRACSDHAHLLIKLSNDQTNNIKYFKFLNVWTNHQDFLQAISEAVVQYFQKTF
LSEQQRQNLEATSQLRTKITEQDNEMLIASPSIQEVQEATFYIDPDSAPGPDGYSGGFFQSAWSIIQEDLHMAIKTFIGG
AELTKFYTHTCLVMILKVESPQYISNNWYSIIVNGDRQGFSKSDDTILFCNGSKETLEMFLRTLHIYENTSGQLINKNKS
CFSVANNAKQNFIAKIKLITCMNHQEFPIKYLGCPLISGKKKTSHFNELVKNIINRIKGWHNKLLSTGGRVVLIKHVLLA
IPTHLLVALQPTKGTLDNIEIYLARFFWSSKEEGGKHHWIAWRTLCLPFEEGWINIRRIGDVCNAFSYKEIAENEIKRIL
GRDEVNFWCDNWSQIGPLYKLLPTGFSVHNIMVKEILGNGKWNWSILQNQLPNQIKVMITGLGLNLNNEEQDKPVWSPTS
AGNFTVTSAWNICRHKGIEITDFNKIWHKDIPFKMSFLTWKAIINRLPTGAKFKRLGIPLSPTCYCCTNNNIPTTLESAE
HIFMIKVENSWENINQIFDVSINHKNVIRVNWIKPPTMFAKLNTDGSCVNGRCGGGGILRNALGQVIMAFTIKLGEGTSS
WAEAMSMLHGMQLCIQRGVNMIIGETDSILLAKAITENWSIPWRMYIPVKKIQKMVEEHGFIINHCLREANQPADKLASI
SLSTDVNHVFKSYANLPSLVKGLVNLDRMNLPTFR
>ATLINE1_7_gag#LINE/L1 523-1413 [Arabidopsis thaliana]
MLVLQRWTPLENPPLIDFIPFWIQVRGIPFHFLNRDVLTHIGRSIGNLLDVDYDAEAAARVEFVCIQIHWDIQQPLRFQR
YFQFQVGVNTLLRFRYERLRGFCEICGMLTHDSGACIIPNGGADHIPEGNDDDDAAIPPPDRAPIADINAIPRDIDGNAE
DEARADMDDGEAEADALDDIDPNHDALGSHKEMEGRAGVYNWWNAEGETSSVTHPTYADLINRMGPLPTPNLDDTAGVRS
SDRGKRKREDSPDETVKIENVTMVIREIGESSGCSGEASHPGLERGAVGLEPPLPP
>ATLINE1_1_gag#LINE/L1 17-1609   [Arabidopsis]
MESGARVLGEKAQDATMTDVGEKGRPPGDPPDKSSSWANKVRGGHVGGMLAPTDVLSDEFVRARLSLTFPDGEDGEPLII
IGLEVFEAMNSLWKNCMLVKVLGRSVPIAVLSKKLRELWKPIGAMHVVDLPRQYFMVRFESEEEYLTALTGGPWRVFGSY
LLVQAWSPDFDPMKDEIVTTPVWVRLSNIPLNLYHPSILMGITGGLGNLIKVDMTTLTCERARFARVCVEVNLRKPLKGT
VMINEDRYFVAYEGLTNICSGCGLYGHLVHNCPQVKQSNVVKATQSIVAVETSLAPVSQSVDGFTTVGQSGRRGTKQPAT
VVFAAGGTRSGLGKSQRDLGKKSDSANISVTNSFGSLLTDMEGTDLSADVVELEGNKENEEILIQSRNEKKVIHGNVVPL
GENSKRANEGARIGKKDKRNGLKKVAVSNGPRPNQMNHVRPTRGLVFGPTRGEMERSFNGKRLRIEEKNPGRPGGVFTQT
GDGSSNVENSGQGRVVKNMVGQLDSNQSTMPMEETMRSVPQGSGNGNMVA
>L1-1_MD_gag#LINE/L1 752-1675 [Monodelphis domestica]
MTNSTEAQKPQNTKKNKKKGATLDTFYGAKIQNTEQIEEDIQENSPKSSKGNRNSPQTHEEFESERTKKMEALWEEKWEM
MQKKFTHLQNQFDQTVKENQALKQELIKQSQNTKKLEENIKYLTDKVIDLENRGRRENLRIIGLPEKPEINTKLDMVIQD
IIKENCPEILEQGGNTXTDRAHRTPSTLNPQKTTPRNVIAKFQSYQTKEKILQEARKRQFRYKGMPIRVTQDLASSTLND
RKAWNMIFRKARELGLQPRISYPAKLTIYFQGKVWAFNKIEDFQLFAKKRPELCGKFDTENQRARNT
>L1-5_PTr_pol#LINE/L1 1927-6102 [Populus trichocarpa]
MNFILACKYISIKYFMKFFFWNCRGAGSGEFCAVMHDLRKNHKFQIGAVAEPRVSGFRADKIIEKLKFESSFRVEAQGMS
GGLWLMWNNSNVNVKILNSSRHFIHGSVDEGSSEAWLFTVVYANPNAILKKQCFEEVANLARNVRLPWMVIGDFNEILMA
TEKSGGVGVDNRRIHRFAKWVQECKLIDLGSKGPKYTWRGGIRNGYMRVQERLDRCFGNAQWRQLFQDANVLVLPRVRSD
HHLILVELKEQRVTVQGEGRPFRFEAAWLQHREFAEFLKNHWETDAEVPTALEGLMVQLKIWNKWVYGNIFQKKRKVLAR
LGGIQKAIAVRGNPHLYQLEDDLSAEYNQILRQEEIHWFQKSRCNWISFGDRNTSYFHTKTIIRRQRNKIKALKNELQVW
VWEENKLKDMAREFYQKLFWQDQEETREDIRLEGNFPIIDQNHINQLEAPILDDEIKAAIFGMKPYKAPGPDGYQPIFYQ
SQWHVIGQSVCRYVRDIFTGNKDMSRINHSYLVLIPKVQMPEYLHQFRPIGLCNVILKALSKVIVGRLQALMPNLISEVQ
SSFVPGRQITDNIIVAQEVIHSMRKMKGKKGFMTIKVDLEKAYDRLSWKFIRETLIDARLPSDLIRVIMQSIETQTLSVL
WNGSATQKFSPNRGIRQRDPLSPYIFVLCLEKLSQLINKQVEDNSWKPFRMRRNGLKISHLCFADDMLLFTEASMDQLER
VTKCLDTFCAASGQKVSNTKTKVYFSKNVSVSLAGDISRRSGFQITKDMGKYLGVPLLHQKVTKNTYSYLLDNMQKKLAG
WKASNLSLAGKITLCKSVLSTIPLYPMQAAVIPKHTCYEIEKICRRFIWGQQEGRDKIHLVNWNKMCRPKEEGGMGLKKM
KSMNRAFLMKLAWGMMKENHLWVKVLKDKYMSTRRREGNPVAIPSDSVLWKAICKEWDTVNQNATWNVGNGKRILFWRDS
WLESYGPIINHLEREVQVETLDYTVADMVDDRGNWKWDVFAHLIPMQIVMSIVGYTPPMQDGIDDTVGWDHSSNGKLTVR
TAYMVLEERGEMDQDPIWRLIRKWQGMERIKVFLWTVAHNSIMTNDLRYRRHLTANRFCDHCGTEVETLTHALRDCPKAR
KIWEVFVKVENRELFFSQNWYAWLVSNMSARNRXTDHGAWSLEFGIALWYIWKERCNRVFGVDQGNWFRAILAIKRMVRD
TEFTQRHGNDEGRSSKEDTQVGWKYPQEERIKLNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAV
YVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNIIMQIXGMLGRDWEVTTYHVYREANCVADWLANYGLTRDL
LDRGSDVLEEPPSGLYPLLYYDLIGSTVTRSI
>L1-4_XT_pol#LINE/L1 2286-6018 via tfasty with L1-1_XT_pol, 1 frameshift. [Xenopus (silurana) tropicalis]
MAKISVTSWNIRGLNSKFKRSLMFTYLKRYPPSILLLQETHLTGQKILALKKPWVGWHYHSTYSSYSRGVSVLIRKGVPF
ELIKLHTDYYGRFMILHGLLAHKPITIINIYVPPPFAMSVLDQIISKLAEFPISPFLIMGDFNNCMNPSLDRSKTEPNTS
TRLAGWADALHLTEVWRWKNPTARIYSCHSLTHKSLSRIDLAFASADLLPMVDTIQYLPQALSDHSPLSLSLRWNPSPVD
RLWRLSPLWLKNEIVASQNQKAYTEFWELNNNSASPLMLWDASKAVMRGELTAVISQARNEKKEQLNEAEKSFIAAETTH
TQNPTEHTYEQLLSARNSLSRATISLTRKAVLYQNQRIFEQGDKNSKLLAYLSKPQNNSTAIPHIRQDDGTLTTEPKNIA
QQFASYYKNLYTTTTTYSKTQLAQYLASIPIPKIAPADKAYLDAPITKQEVADAIATLPSNKTPGPDGLPSNWYKALAEY
IPTKLLETLQYAYDNQALPASFAEALIVVIPKPGKDPSLCSSYRPISLINTDAKILAKILAARLQRVVPDLVHPDQSGFM
PGRSTDINLRRLFTNLQIPHLETDTRVVASLDSAKAFDSIEWGYLWEVLSGFGFGQTFLKWIKLLYQHPTARVRVNGITS
PSFSLERGTRQGCPLSPILFALAIEPLAILIRNSPDIRGLTYGNIQEKLSLYADDLLIYLADPRDSLTSLLQQVDKFGHY
SGLRINWDKSILCPIDPLQPQPVIPNIPLKWANQFKYLGVWITADPTNYIPLNLDPLLSDLKTRLTQWSKLPLSLWGRIN
IIKMIYLPKFLYILHNAPIFIPKTFFKKLNQIILPFIWNNRPPRMAWTKLCAPLAEGGLALPHFYHYFLASQIHYLHWCF
IHDPYNPNLQLQATILGSLEGLRNFPYRHLKDTAPLPTTLTIPHKAWTIALTLLKHPPPLLTSRLPLWGNQYLPQFRTLH
NFIYWPRHNIKYLGDLMEHSTFPTYLQIREKAQQPTLPFYKYLQLRSVFRDQFATLTPQLISLPVEATLQSSNPVKLTSN
LYQNLLSTGPKPFHSAQIWWTSQIPALTQDDWEEATDTMYNCLISTRDRLIQYKTFHHLYITPLRLHQMGRTPTDHCPRC
AASSANFFHMIWSCPHIAKFWSAVTKYLSNNLAFPTVTAPETCLLGVLDSIIAQNSSRLRYRILLFYAKKTVAMHWMGTT
LPTVTAWKNLVNAVAPLYKLTYENRGAPDKFDKVWGPWCDLEGN
>L1-6_SBi_gag#LINE/L1 95-2563 LINE1-2_SBi_gag below 80% identical, but still left out because of poor quality.  [Sorghum bicolor]
MVTAVTQRPKPIHAAQPIHSKFWATSDAMDDSEDEDPSTPEFVQLALEAGYSIDELVAAEDALNAGNTSDKLKSAHSIVS
NLVNRKITGGVPWQGPLPPPRISPPRTLGDFFAKASYRRSSVSHSPAASPELGSVVRDSMSTFSKNFEKQQGRDFRNQDP
FPPLAPAPLTVNTTVCNGEFFSAIDSVPNKSRELDKFNRYQFGPGKFYRPTKGLCSLFLRTASRRSRKPSLSPPTAPSPR
RRSFAEVVKGKGMAAQGGANGGGFGQQGGGRGGPGFNPGFNPGFDPGFAGRGGRGYGSFPHNRGRGSNFGGGRSGYGGYG
GYGSQNNYGYQGFHGANRGRRPYYGGYGGKRGRGAGYGGQQFQQQATPNPTPMGGGNYGTGAHIADQMGHNLGAQQQHST
VPATGTKSATGGVPIAVTADNHLGSAVLGDPQPGHPSAGQELHQAPPAGLHKQGSKLELSPHCPVENKTTAEVPKDTVPH
NPDNEPMNVDLPESSKGIKKSKGKPFCFRCLTKGHTSHECTAVLSCHFCCGEHVAKTCSYAKKTNLSALPYGYAVEGLGF
YYIPVFSEFQKDKVEEKSAVVRVLEGSITAGMLAVELEKLLPGKFKWEIEEKGKDAFTTNFPSTVWLDTVVNWGPMVTKS
FEGKIQFEKSSEEDVYKYEIEKVWVQFRGLPSEFREFPIIWAIASILGVPKSVDIKFTKKFGRSRMRVAVIDSALIPAFV
DVVIGEFIYQLHFGVEQEAPEGEPILLDLDSKLEDEEPNEDDDPNDDDPKEEGNGDKPMDIDKKKRIRHHILQRRLVLVE
QVSRIAPLLKLQKITVSLENQIQ
>L1-11_Mad_pol#LINE/L1 1548-5797 via tfasty with ATLINE1_2_pol, 1 frameshift. [Malus x domestica]
MLFQVQLFNDLVQPRIXVQLSLXRXVPPMWRXPLWVARLYALVLSXSSIFMMNIVVWNSRGAGCTKFKDNVAELINIHQM
EILVICEPRISGQKAISVVKSLGFPCFEIVDAVGFSGGLWMLWKDSRLKVEVIGTTDQAISVVVGGVGQNHWIFTAVYAS
PCVTKRERLWDYLDFVADCHQLPWLIAGDFNDMLCVEDKLGGAPLCSDSKGFKSWVDRNYMIDLGFIGPKFTWTNKKVLE
RIDRGICNMSWRSLFPEAYVHHLPRTKSDHCPIKICLNSHKSFSPKHRPFRFEAMWLRHENFKEFVDGYWSNGGGSVVDK
TCALVEPLKKWNIQVFGHLKQRKRKLLARIDGIQKALCRGPNKFLSKLEDELISEYNEVLNEEAIFWHQKSRLRWLQEGD
RNTKFFHLTTIVRRRRNRIEGLINNQGAWISESSDLKKLAVEYFQTIFSHGQKSKQMESLPNLFPDIHDADREALTKDID
MVEVKESLFNIGGLKALGIDGFPACFYQSQWNICANDIFEMVWNAFHSRRLPARLNSTLITLVPKIDNPQKMLNFRPISL
CCTLYKVISKIIVARIRPLLPHLISPNQASFVPGRQISDNVLIAQEILHKFRMSKGQKGFLAWKIDLSKAYDRLNWKFIE
YVLNEVGLPSNLVQLMMECVSTVRYQICFNGELTDGFTPQNGIRQGDPLSPYLFVLCIEKLSHLISATVNKGRWKPVKAS
QSGPGVSHLFFADDLILFSEATPKQARLMKRCLEKFCKASGQAVNFEKYVLYCSPNTSRAVVNSISAICGSPVSESLGNY
LGMPLIQTRVSKATYSGVIDKVQKRLATWKSKVLSMAGRITLIQAVTSSIPVYAMQTTKLPASVCEELDKLNRDFLWGDT
DQKKKVHLCQWSMVCRPKSKGGLGIKRACVMNQALLAKLGWRIHAKDSGLWSQIYQAKYLKGYSILDPKIHERTECSYSW
KGILYGANLLKKGMTWRIGNGESVKFWKDSWVLNVPLMETIDVANISNIDCVVSEFLRNGWWDIDKLRDVLPEDMVQKVI
CRPAGTTGAGMDKIIWRCASNGVFTVKLAYNLFFDGEDLPDSCWDFIWRVNVPPKLKVFLWLMSKGRLLSNEQRVRRQIT
SDSSCMTCCGPIESIAHIFKDCSRAMCIWKSMGVPWQLRNAQNLEFKAWLLANLKVSSKGTNEGAWCTLFLFICWHIWKW
RNKQIFDVNFVMPMYPKAIIERDVDEWLKACVKYSVKLVKRQISLSWDHPDVGWCKLNVDGSRRTNSGRIGAGGVLRDHN
GNWLGGFAVNLGQGQVCDAELWSLYFGLQLAIDKGATELHIEMDSKAVIMLLKQSQVDNFHPLETIMHSCRLMMRQLRRC
ELNHVYREKNIVADQLANWSYNMDIGVLVFDEPPVWIRSALIDDAAGVPRTRFAVGL
>L1-10_Mad_pol#LINE/L1 1223-5388 via tfasty with L1-5_Mad_pol, 17 frameshifts and 5 stopcodons. [Malus x domestica]
MKTLCWNCQGIGGSLTVDALVEQVRLHNPEVVILLETKNKSDRYKYLLKLLRMDFMQPVEPKGIGGGLCVFWKDEVDISS
IVWSSFYIELGVGGDPIHSDWRMLAVYASTDDKRRRGQWGELSKRISSSQGKCIVIGDFNDIVDDEEKEGGNYRSMASTR
DFRDFLAENELLDLGFEGYPFTWRNKRDDGLIQQRLDRGVATSGWMDLFPNAKIKHVVLEGSDHSMLILSSDGIHSERAA
RFIYDSRWGKNPECRDIITDAWRESVEGSLAFKVSEKLKGTRHRLGVWKKTTKPNSKRRIEELREEIRKGYCGCDVRQEY
IRGKEKELAVAIKEEESYWKVKSRNTWLREGDKNSKFFHAQTVQRRRSNRMQGLEDNTGVWQKDPVRMQDIAVSYFTALF
QSGGSRQGGEVAACVGAKVDARENEELIRPFSAEEIREAVFQIPATKSPGPDGFTAGFFQDHWEVVGGDIIRMVQAFHHS
GRLLQKINHTHIVLIPKVKAPRRMTELRPISLCNVVYKIIAKVLTRRLKKVMDRVISFNQSAFVAGRQIHDNILVVHEIL
HSLKQGVEGEDGRMAIKLDMAKAYDRVEWGFLIEVMSNLGFHPKFCAWIRECISTVSYSVMVNGVPSGYFRPERGLRQGD
PLSPFLFLLCAEALSAYIRKHEMEGLISGVRVAPGATPITHLFFADDSVVFCKADETEAGNVIKILEDYGKVSGQIINLE
KSSIFFGKGCSKKNKKRIVSRMNIQARDGFGKYLGIQADFGHSKKAVFESVRRGIESRIDGGEQFLSPAGKEILIKSVAM
AMPNHAMACFKLPVTTCKEMERVIAQFWWRGQSKTRGCHWVAWDKLTESKKVGGLGFRDLIGFNLAMLAKISWRVLDKPE
SMLGMVLRDKYFPNSSFLEASKQNKSSWGWKGILLGRQVLNRGLRWRVGNGESIRVADPWIPKPHSFKPVLGMGLLIKGV
xVDDGGxAGVELEEVATVVAPEDLELIRTIPISRRGCEDKRIWHYTKNGVYSVRSGYHVAMEMMKNGSLGGKGGDASSSG
SLGGVWKRIWSLAVPNKLRFFIWKCCRKALAVRHNLERGGFGGExVxAVWSGDETEAHLFFGCEFSRVFWFGTSLQINMA
AMGVKDFLEGWQRVVERMEKEEDADLIMQQVVFGFWRIWKCRNEAVFKGIRILPHVAVELWQRQVEEFREAMMVRxWREG
SNGGVGGQGGGRPGEGSGGRGSMEETCVWRLKLNCDAAWRKDTKVGGVGWVLRDFAGIPKLAGGVGGERFAAAIMAEAEA
VRQGLEMVVGSEVMEAGTRLVVESDSKGLIQMLNKEVTADVTLEIYLQDIWRMASLFQLVRFCFTPRQCNRAAHSVAAYV
VKHGGRFGWDELGPEFLFNILAEDANVTVRI
>L1-4_PTr#LINE/L1 1-881 via tfasty with L1-2_PTr_gag, 1 frameshift. [Populus trichocarpa]
ERDGGKXLFQKTQPPFQTNIIPSHKHRKQPDLPYKPYYPQPQLPSITLNTQNLTNYRGFHLQCYFENFPSWVDYHKLKDR
FRKQGKVIKFVSRKTNQAGKHFGFVTILSNLSDKTLLECLNDIWFDSYKLRVNVAKHRRKDEVMKQKTVGTGKQISKLNN
KAKAPIRVRDNRSYLEAVRSGSQVHQASDNATPRPHNFISFNTTDEEILWLRNSLIGKISQGVDYAQIRHGLIQLGICFS
AVRFLGASQANISFDGEKSMQQAMQKGMECWKLYFDEVRPWTEEDVIESRLAWI
>L1-2_NV_gag#LINE/L1 100-978 [Nematostella vectensis]
MKKRKERGSSSSSASTVSPQPKKFMEVFEKETMAENGEVSKSTEKQPVTLESIWLVLLEVQANTQGLKEEVGDLKRAFSV
QEEQIKDLEKKSVALDTRVSTLGKLVVRVEENAAKEEYIEKLEVKLDSLEQYTRKNSIEIAGVPSGTFSCEEVVINMARM
LKVDIKTEDIEISHRLKKRKQEEFSPIIAKFICHKKKAAFLKARKGLKDVRYWDLDLVGLEKPACIDAKLYGRIFINENL
TPARRRILGRALAMRKKKMLFSAWSIDGKIFIKRSEQGMVEKVESLQALDTA
>L1-1_PTr_pol#LINE/L1 96-2200 via tfasty with 9758853_Ath_pol, 1 frameshift. [Populus trichocarpa]
RLTDFRPISCCNTVYKCIAKILAGRIKVVLPSLVVHNQTAFISGRRISDNILLSQELMKGYHKSTGPARCAMKVDLMKAY
DSVRWDFVDAMLIKMGFPRTVIDWIMVCVTSCQFSINVNGELAGYFQGGRGLRQGDPLSPYLFVLCMEILSGLFCKMSAN
QEFKFHWRCKKDKISHLCFADDLMIFSNGDVNSIRMIRTVLTKFQDLSGLYPNPNKSDIFLSGVLNAEREQIIHILGFRE
GELPMKYLGVPLLSSRLKAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIKNVEQIMK
SFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKRITEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQ
NCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAI
GWHPIIEAIPSNSNPKMGQKDEIVWLDSPNHRFSVKVAWEQLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQD
KLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWATVSWHGKSFVNFSRKLSFAA
TVYHVWQERNARIFAGMSRTPNLVLNQIECIIRDKLDLMRNVVPTNENKRIQRAWRVNTIDS
>L1-2_PTr_pol#LINE/L1 2366-6040  [Populus trichocarpa]
MQILSWNSCGLGLARKKRTVSKLIRDFDIEVCFLFETKLQSYSDRLVFQLWSVSNVSWFGNEAEGTKGGILAMWDNSKFA
VSSVEYGHGWIGLFGQNVLTGFSGAVVGVYAPCNQADRLLLWKDLRILKAAFECPWFLAGDFNETMLRSDRSSGFINKVG
STAFRLFIDDCNLIEYNMSEGLYTWFRGGSMSKLDRIFSSPCCHLQFPLLSLRRLPRGFSDHCPLILGVSPAEKGWIPFK
FMDCWLHHPNFKDIVKGIWDEACNEFSGQFKLIKKLSFMATRLRQWNRVGFGHQETALASIQSNISAIEQKSEYGQLSTA
EQNSLDSLIKKQWQCNLHIESMWRQKSRQIWCRLGDRNTRFFHLVANFRRAKNHLLKVVHNGSVVEGLPVIKDAAVSFFS
NLFRSPDRFRIGLGPVGFKTLSASSSASLERDITLEELKQSVWDCDGSKSPGPDGFNFKFYRLAWNFIADDLLDLAKNFF
KTGRLPKGVNHAYVHLIPKIASPVGFKDFRPISLIHGIYKIMAKVLSSRLKAVMHDLISENQTAFLAGRQIIDGFLVANE
AVHSLKRYRVPSLIFKVDFHKAFDSVQWDYLEQVMRHMGFGEKWINWINTCISTAKLSVLINGSPSKEFLMGRGIRQGDP
LSPFLFLIAAEGLSVLFQRAASNDLFKGIPFGDSFCLSHLQYADDTLIFMPANLHMVKTVKRILLWFAICSGLHINFHKS
SLIGINVGEDTCASMAYSVFCRFDSLPCSYLGMPLGSNPKRLSTWKPIIENFRRKLSMWRGRMLSMAGRICLIKSVLSSL
PVYYMSSFLMPKGVCNILTSIQRRFLWSGVAKQKKICKVQWRIVVKARKEGGLGLGSLMSKNISMLFKWIWRLSLPDHAL
WKQVTTHFYSPTFENGIPKLHGHISPFWKDVLSILDPNSVIGLVLRENIKFMIGDGSSILFWSDVWIGSNALRSIFPRLY
QISTFRNGLVNEMGQWVNDQWRWNLVWRRNLLSYEEQQYHHLLSMLEPTIIRQGKDDKLIWPCNSDGSFSVKSCCTLIDN
TSSANDRVFEANVWIKGAPPKVQVFLWLAVQDKVSTRAFLHQRTVLSATQASCVFCSSDLETSEHLFIHCNFSRSVWMKV
LDWWGIQCCLPRTLDSLLLQWPEMVHGKFQRSAWRLISSSTIWGIWLLRNKIVFEEGTINLFDCFSTILHRVAIWLHTQD
SNFTYTGNDLLRSSDGIKLWCNKKS
>L1-3_XT_gag#LINE/L1 773-1696  [Xenopus (silurana) tropicalis]
MGKNTQRARFKAATRLERFAHTHQVSGDNGGSQPPSPALLDSQPEPSPTEPTMSELLGAIIENRTTATTQLEEIKVDLSL
LRHDLQNITERTTSLENRVSHLDDAVPRMQSDIQAIKQQLQQAVTKSEDLENRLRRNNVRLIGLPERAEGQQPEQFIERW
LKDTLGQDTFSSTFVVERAHRVPTRPLPPGAPPRPFLFKLLNYRDRDAALRAARLKGPILLNGATISLYPDFSPAVQKER
ATYTAVKRRLREANVPYNMLYPAKLRVQEGGKAIFFTTPSEADEWLTRKGIQRSPPRAGRPPTSNSRQ
>L1-3_CPa_pol#LINE/L1 1606-5248 via tfasty with VLINE7_VV_pol, 1 frameshift. [Carica papaya]
MMFDKILSWNVRGSNDARKREVIRGCLNRWKPSIICLQESRLSEVNEKIIRSIWSFKDTGWCSLPAKGAAGGIIIMWRKD
KILCHSVMLGDVSLSCLFSNLSNGDNWYFSGVYCRGNSSERNLLNVELEKIKSSWGCKGIIGGDFNMILRRSERSGNHTP
DAEMKTFSLIINNMDLIDLPLAGGKWTWSNLRDQPSFSRIDRFLLSADLLSSVPKIIQKLMPRPISDHFPIMLVSDGIKW
GPVPFRLDNKWLKHEKFKSLVTDTWRNTLVRGTASYRVAQKLKILKAEIKNWAKVTAKQEEEDFSGIIDEIDNLDRLEAE
NHLSPQDKEKRSNLKINLAHKLHLEAIYWKQKSREKWLKDGDKNTKYFHMLANHRRRINFIDELNIDGHILKCNNELRDG
ASKYFHKLYTENSSSRPRLDDLHFNNINDGDRNLLEMKFTETEIYDCLRDCDGDKAPGPDGFNLKFIQSFWDVIKQDIMD
FFNDFHNHGSFVRSLNSTFLVMISKKTNPENIRDFRPISLIGCIYKLLSKVLAKRLSTVLHKIIGDSQNAFVYGRQISDA
ILIANETVDEVIRNNKQGVLCKLDIEKAFDHVSWDFIDYMLERCGFGTKWRCWIRTCITTTSFAVIVNGGPSNFFTASRG
LRQGDPLSPLLFIIVMEALNKLLDRAKELKLLQGISMGHRGNQIELTHLFFADDALIFCHPDIRSLIFLKCTLLCFQAVS
GLKINLHKSELVVMGSQSGESLAQILGCKVSQLPISYLGAPLGAKYKDRKCWDPIIDMFQNRLANWKRKFLSKGGRLTLI
KSTLSNLPIYLLSVFNIPTCVANTLESIQCNFLWGDDDSNNRKIHLVNWKEIKKPIKDGGLGLRSITTLNKALLGKWIWR
FWNEGNSLWKSIILCKWFNGDYHDQSRIKNSTFGSSLWKNIWKLNNIILQHSSWVIGKGNKIRFWSDIWHDKSTLQTRFP
LIYAIARDKNILVKDVAVLDNQGFWQVSVFRNLQDWELEEYLSLLQTLSSIQVYDREDNLKWLLSKNGTFTVRSLYNHLA
DNLNQNNISFPSNIIWKSGATPRISFFAWEAAKGRILTLDNLMKRGFTIANRCFLCKNNFETCNHLLLGCSVSQHLWNTI
ISLMGLSWVMNNNIHAELLAWEGISSKRKMLRLIPLTIIWVLWKERNNRAFEGIELDFNKLIDCWFHYFGSIILGHNIDC
LDDLGFVVDSLIDL
>LINE-3_OS_pol#LINE/L1 Chimaera of best bits of LINE-3 ORF, gi|50921361, gi|34897770  pos 8911-10967 of consensus. What's the rest of the element? It doesn't look like anything. [Oryza sativa]
MALEALEGPIHAVSRAPAQPDVEARPSSGEGPSHGRGGRGLQRPLLQATFPGAHHRALLALLQLLAPGQGCGGVGRVWLI
GFFSSALGVVPLNGIVQRERFGVERARSELARPPGCCLDFDYSFLPAVGRSGGVLLAWRTTVWSVSDVHHADFSLTALVR
HSSNVAPWWLSIVYGPQEEPDKLRFLDELRSLRSSCTGPWAVVGNFNLILEAQDKNNLNLNRRMMGHFRRLVDELELREL
PPHGRRFTWSNERESPTLVKLDRVLFSADWEELFPSCLLQAASSIASDHCALLLHTCVTSPKAHCFRFEAFWPKFDGFLQ
VVQDAWHPPANLPPLAALAWCFSTMAKHLQRWSDRHIGSEGDANTKFFHLHARARRQKNFITRLRDGDQLAVSHDALQEF
ASSHFCAILGTSVERELALDLHSLGLRLAQLEGLDCPFTEDEVWAVIKSLPSDKAPGPDGFTGRFYKSCWPVIKVEILAA
LNSLFLTNGQGFASLNDALISLLPKKDEAVDIKDFRLISLIHSFGKLFSKILASRLSPRLDELVASNQSAFIKGRSLHDN
FRYVKLAARALHAKRVPXLLLKVDIAKAFDTVSWPFLLEVLAQLGFSQRWRDWISLILSASSSRVLVNGVPGPRFPHRRG
LRQGDPLSPMLFILVMDVLNAMLRKAFDSGGFLPLNDRAIRHRASLYADDLVLFLSPVRQDLEFIQGILSVFGAASGLRT
NFTKCSITPIRCSVLDLKLVQSSFPCSISEFPCTYLGIPLSVRKLPKAALQPLVDKVSHRLASWKGRLTTLAGRSVLVQS
VLSSIPVHVSMAIGLPSWVIKAIDKKRCAFLWTGTDSANGGXCRVSWTRVCRPRDLSGLGIMDLMMAGFALRVRWLWLQH
SGHHYWFVLKAPVEWSVSDMFAASTFSILGDGQSTLFWTDRWIDGRSIASIAPDLLHAVPPRFRGSRTVAVGLANNSWVG
DICGALTVPVISQFLLVWDAVLPTQLSSGVEDHLAWRWTGDQCYSTQSTYRAFFLGQHSFACADLLWHAKGPAKCKFFLW
FAFQQRCWTADLLQKRGIDSHSACPFCAQKLETANHILIDCVFARQVWLRVMSPPGWAALSPLRGSWLQDWWSSSRACLP
EHHCSGFDSLVLLVSWQLWKERNSRVFDSALASVAVVMESTRSEGQLWSLADVAFFGDLLGV
>LINE-1_OS_pol#LINE/L1 1-3581 via tfasty with Karin_TA_pol, 1 frameshift and 3 stopcodons. [Oryza sativa]
MKGIFWNSRGLKDLAKTRFLSEISKEQKLDFIALLETSKNKYTDSWLKSIYGGREFLWHWTRPKGRSEGILLGVNLEYFK
VSSIDEGDFYVKFHVRNKEDAFQWILVAVYGATQEEYKEAFLTELVNSCRKEALPMVIGGDFNIIRKPQEKNNANFNVKW
SFLFNAVINSLNLREIILSGRKFTWANAMPNPTYEKLDRVLVSTEWEVKNPLVTVHALSRDLSDHTPMLLDTCKGSHKDS
QPLFKFELGWLLREDFQKLLANIWTKDVRGATNIARWQNKIxRLRQFLRGWAKNTSGAYKKEKVKLMAKADELDKLAETR
LLTSQELELKNSVKHALAKMLREEEIKWYQRAKTRQIVGDRNTKYYQMIANGKHRKTKIFQLDQEEGIIKGNEQLKKYIS
NYYKNLFGAPEKNNFSMCENQKDDIPQISVAENELLTSEFSEEEVKNAIFQMEHNKAPGPDGFPAEFYQVFWEVIKDDLM
AVFRDFHRGNLSLNNLNFGIITLLPKNKEARQIQQYRPICLLNVSFKVFTKVMTNRIALVAQKVIRPSQTAFLKGRNIME
GAIILYETLHEMHRKKLDGVILKLDFEKAYDKVDWKFLQQTMRMKGFSERWCKWIEQIVTGGSVAVKVNDEIGNFFQTKK
GLxQGDPLSPILFNLVADMLAILINRSTERGMTRGVIPNLVDNGLSILQYADDTIIFMENDVEEAKNLKMVLSAYEKLSG
LKINFHKSEMFCYGKAKEVEKAFSFLFGCKIGSYPFRYLGLPMHYKRLANKDWKELEDRFEKKISSWKGKFLSTGGRLIL
INSVLSSLAMYMLSFFEIPKGILKKLDYYRSRFFWQCDEHKKKYRLAKWSVLYKPxECGGLWIQNLEIQNKCMLSKWISK
LINEEGIWQNLLRKKYLRKKTILQVQMQQGDSHFWASLMTAKESFQLLGHFKVRNGKQVRFWEDCWMGNKSLEKEFPNLY
NLVQNKNTVLAKVLETIPLNVSFRRAIVGKNLADWYVIVSKVANVNLTSHLDQFIWKTNKEGLFIVNSMYKLLMFDGVIP
RKSLIWKLRILLKIKIFLWYLNKGVILTKDNLAKRRWKDSLLCSFCNSKESIQHLFFDCIMARYIWSVVYFTLGIRQPRS
CAHMFGNWLNGFEPKLKRQTWEGIAAICWALWLSRNDIVFNGYNHISFLQVIFKATHWARLWSLLLKKVEGEKA
>LINE-4_OS_pol#LINE/L1 gi|58532025|emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa]
MAQSLDLISWNVRGLNSPARCNVVHELMLDTKCTLACFQETKLQSIDDGLARFLGGYKLDKFAFKPARGTRGGILLLWSS
GDFDVQEVRIGRFSISAQITDIRSGVTFLLTGVYGPTRHHLKDSFLRHIRRLRPSPGEGWLILGDFNMIYRARDKNNSNL
NLARMRRFRAVIDRCELHEIPLQNRKFTWSNERRKATLVKLDRCFCNEEWDLAFPHHVLHALPTGPSDHYPLVLSNPQGP
HRPRTFKFENFWTRVPGFKDKVKDIWSQPSSHTEPMHRLNQKLQHTAVGLRDWTKGICSEAKLQFHMALNVIQRLDVAQE
HRELTPLETRLRAALKRKVLGLASIERARKKQASRVTHIREGDANTKFFHLKVNARRRRNTIQRLKKDSGWAVTHGDKEL
TIHDHFASFMGRPGPRPNELNWETLDITPIDLATLGEPFTEEEVHKAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILL
VFSSIYNLRCAHLNLLNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHELISVNQSAFIKGRSIHD
NYLFVRNTIRRYHRQRRAMLLFKLDITKAFDSVRWDYLLALLQRKGFPTRWIDWLGALLSSSISQVLLNGSPGQRIKHGR
GLRQGDPLSPLLFILAIDPLQRILSKATELGAISKLRGRTTRLRISMYADDDVIFINPTQNDVATSANILHRFGTAIGLV
TNLQKSQVAAIRCGNIDLEEVLQGVPAKRANFPLKYLGLPLALGRLRKTDLQPVFDKISGRVASWRGKNMAAAGRTTLVK
SVLSAQPIYLLTALKVMKESLEQLDKQRRRFLWAGTGDITGGKCKVNWAKTCLPTSQGGLGVLSLDKFTRALRLRWLWNE
WRDPSKPWVGLETPCDGVDRNLFAASTKITVGDGNTTRFWDSAWINGRRPKDLMPLVYEISKNRKKSLRQGKEDDSWVHD
LTLDAGLSITINLLDQLVRLWEAVRNVHLDSEEPDQIVWKFTSSGHYTASSAYHAQCLGAPNTNFNSLIWKVWAPGKCKF
HAWLIIQNRVWTSDRLATRGWRNNGHCPLCRCDTETAFHLVAMCRYTKRIWRLVATWAGYQQLEPAQWEEARSVHQWWES
LANTPGIPKKGLRSLILLVVWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWALAGAKRLRELIPHSV
>RAVLIN2_MT_gag#LINE/L1 A poor reconstruction with (fictitious) introns  [Medicago truncatula]
MAQRGNPSYCFCFEKLSVVCLEEFRNLNPGVLKLFAWSQDFKPNLQNNSTAQVWVRLHGLPQEYWRPRIFFAIANSVGTP
ICTDSASTKPMIDRTFGQYARVLVDMDITKDLRYNVLVERKGYAFFVELEYENLPDYCVHCKKIGHDVEICRFAIKTVQA
RTASKLINRWEKKNVAIIVEEAALKEVEVINKNKDKQKDPAAEEGMEKKRSMMIVKKVKQALKALSLLMLHNSTMMSMIK
KMLKLNSPERVQNDMEFLKQSWANIVDDTAAEDRLSEELEQRQAAVEEEQQHIFAEVSASYNKKSEKKQPKRRESEDCSA
SSQS
>OSLINE1-2_pol#LINE/L1 3338-7006  [Oryza sativa]
MKGIFWNCNGFADPKKYKFLSDLTKEQNLDFIALSETGRASFPQSTLNNICAGRDFIWHCMAPRGRSGGMILGVNLLFLD
IGEIEEGDFFIRFKLRQRADDFKFNLISVYGPAQSDLKGHFLSELVRVCSKETIPTVVGGDFNILRNPQEKNNDTFNDRW
PFLFNAVIDTLNLRELESSGRSFTWANHLQNQTFEKLDRILVSTEFETKFPLSTVSILTREISDHTPLLYNSGGASAAYQ
PQFKFELGWLRRDGFSDIVKEVWQGVSIEGTPLERWQRKIRRLRQFLRGWAKNITGAYKKEKKELLDKLDTLDKKAEHTI
LNEFELNVKHVLNDRLAELLREEEIKWYQRAKVKHLLEGDANTKYYHLLANGRHRKTRIFQLQDGNEVITGDAQLKEHIT
KYFKTLFGPSQTSSIFLDESQVDDIRQVSAEENESLTADFTEEEIKCAIFQMKHNTAPGPDGFPPEFYQAFWTIIKDDLL
ALFSDFQQGSLPLNSLNFGTIILLPKQKDVRTIQQYRPICLLNVSFKIFTKVATNRLTSVAQKVIKPTQTAFLPGRNIME
GAIILHETLHELHTKKQDGVIFKIDFEKAYDKVRWSFLQQTLRMKGFSHKWCSWVEKFTQGGNVSIKVNDQVGNYFQSKK
GLRQGDPMSPVLFNIVVDMLAILIARAKNADRVEGVIPHLIQDGLSILQYADDTVIFMSHDVAKAINMKLILTTFEQLSG
LKINFHKSEIFCFGRAKENEAFYSQLFGCKIGSFPFRYLGLPMHTRKLNNKDWQEIKNRIEKKLGGWKGKLLTAGGRLVL
INSVLSSLPMFMLSFFEIPKGVLEKIDCYRSRFYWQNDQHKKKYRLAKWTVMCQPKIQGGLGIPNLEIQNKCLLSKWLFK
LLNEDGLWQELIRNKYLKEKPLGCCQKRATDSHFWKGLMSIKDTFLGLGSFKIKDGSQTRFWCDTWLGNKPLKDRFPSLF
NIVRRKNDSVAKVLSSSPLNISFRRNLVGANLSRWNRVLASIQEVLLQDGGDSFVWSLQASGNFTVKSMYAALISNGIRV
SQDIWQIKVPSKIKIFLWYLKKGVILTKDNLARRNWHGDLKCAFCHQPESIQHLFFDCYIAKFLWRAVHILFGISTPSNL
VELFQQWSKGGNKKQNTLLLTAAAALFWTVWLTRNELVFDNYGPKSFLQVLFRGTHWLRQWAKLQRHEDLRSQLIAASQH
LESSALQFFSSNGWLSARHIGL
>LINE1J_MT_pol#LINE/L1 79-3765 via tfasty with MIUSE1_TM_pol, 2 stopcodons.  [Medicago truncatula]
MKILSWNVRGLGGSAKRPEVRKLLSEKNPSIVCIQETKLAVIDDVFCSSLWGILTHSYSFRPAVGASGGLLIMWDSSVVE
VWSSFSLEHVLLIHGRFIDSNDEFYLFNIYAPCDNGAKQLLWNSLSEHLHRLVGKNICLCGDFNAVRSMDERKSRGVAIR
SFDCDPFNCFIDSNVLVDLPLQGRSFTWYKGDGTSMSRIDRFLLSEDWCNRWPTCMQVSCMRGLSDHCPLVLSVDDFNWG
PKPVRMLKCWSEFPGYKEFVRSKLQSFNLEGWGGFVLREKLKHIKIALKDWHLTHSQNLPSKILSLKTNIDALEDRGEVN
DLSEEDLTDLHDMSMDLHSLSRVNASISWQQSRLLWLREGDANSKYFHAIMSDRRRRNTISSILVEGHIVEGVSEVRAAV
LNHFQHHYQVLPLNRPRVDGMNFRHLSVLEGNALIRPFTEAEVKVAVWDCDGYKSPGPDGVPLGFIKDFWQDLKGDIMRF
VLEFHRNGRFSKGINSTFIALIPKIDNPHRPNDFRPIALVGCLYKILAKLLANRLRNVMGSIISDTQSTFVKDRQILDGI
LVANEVVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDDVMGKMAFPTLWRKWMKECVTTATVSILVNGSPTEEFQMKRGL
RQGDPLSPFLFLIAAEGLNVLMHSAVNLNLFTGYSIGSHNPTVLSHLQFADDTLLLGVKSWENVRALRAILVLFENMSGL
KVNYHKSLLVGVNISESWLQEAASILSCKIGKIPFMYLGLPIGGDARRLIFWNPVIERLKSRLSDWKSRNLSYGGRLILL
KSVLSSLPVYALSFFRAPAGIISSIESILIKKIWGGGEEHRKIAWVDWNSICMNKGVGGLGVKRLQEFNIALLGKWCWRC
LVVREGLWYKVLFSRYGEHRGRLREGGVTGSAWWREIVKIQNGIGVEGENWFEESIIKRLGDGLNTFFWSDCWVGTVSFM
ERFRRLFDLSIHNDLSVGEMYALGWEEHGEAWRWRRILFAWEEELVGEIRNLLTNVTLQDTQSDVWLxRPNIGDGYTVSG
VYQMLMRQEMHNHDIVSDAPWHKSVPLKVSICAWRLFRNRxPTKDNLVRRGVISHDSQLCVTGCGQNETLDHLIIHCPIF
GGLWQQIKTWIGVFSVDPYQVLDHYYQFVFSFGSNASRRSFLHLVWLCGIWVLWHERNQRLFVNTAKTTAQLLEKVKIIS
LQWLKAKNVCFPFGYHVWWQRPLTCLGIG
>L1VL4_gag#LINE/L1  L1VL4_5end_432-953 [Muridae]
MARGKGKNISNRNQGYLASSEPSSPTTASPGYPNTPEKQDSDLKSHLMMMIEDFKKDINNSLKEIQENTGKQVEALKEET
QKSLKELQENTTKQVKELNKTIQDLKMEIETIKKSQRETTLEIENLGKRSGVIDASITNRIQEIEERISGAEDTIENIDT
TVKENAKCKKLLTQNIQEIQDTMRRPNLRIIGIEESEDSQLKGPVNIFNKIIEENFPNLKKEMPINIQEAYRTPNRLDQK
RNSSRHIIVKTPNAQNKERILKAVREKGQVTYKGRPIRITPDFSPETMKARRSWADVIQTLREHKCQPRLLYPAKLSITI
DGETKIFHDKNQIYTISFHKSSPTKDNRWKTPTQGGKLHPRKSKKVIFFQQTQKKIATQT
>L1PA16_gag#LINE/L1 L1P4a_5end_1304-2371 via tfasty with L1PA2_gag, 3 stopcodons.  [Primates]
MKPTDYTQLTPQLKEHQPSQMRKNQRKNSGNSKSQSVPLPPNEPTSSPAMVLNQTEMTEMTDIEFRIWMARKLIEIQEKV
ETQSKESKXSSKMIQELKDEIAILRKNQTELLELKNSLQEFHNTIGSINSRIDQAEERISELEDRFFESTQSDKNKEKRI
LKNEQNLREIWDYVKRPNLRLIGIPEREGERISNLENIFEDIVHENFPNLAREVDMQIQEIQRTPARYYTRRPSPRHIVI
RFTKVNAKEKILKAAREKGQVTYRGNPIRLAADLSAETLQARRDWGPIFSILKEKKFQPRISYPAKLSFISEGEIKSFSD
KQMLREFISTRPALQEVLKGVLNMESKEXHLLPQKH
>LINE1-6_OS_pol#LINE/L1 2123-6253 via tfasty with OSLINE1_1, 2 frameshifts and 2 stopcodons. [Oryza sativa]
MSCLAWNCRGIGNAVTVRDLCALVKEAGSHIVFLSETRQKIEKVRRLRNRLGLRGFAGVNSDGMSGGLALFWHESIHVEI
ISMNERYIDAYVRLSVNAPVWHATFVYGEPRVENRHRMWALLNSIKQVSDLPWLVVGDFNETLWQFEHFSLKQRSELQMQ
AFRDVVQRCDLHDLGFSGVPYTYDNRREGRSNVKVRLDRALADDGWRGLFSTAQVFHLSSPRSDHCPILVKWESCEGVHY
EIYWERDPAISEVIAESWGVSGVKQDLSDISQALFRMMSDLRTWSKKKFRNVSREIEKNRKKLSKLLLSNANNREIRRVS
DxMNELLYREEMIWLQRSRIAWLKEGDRNTRFFHNKAVWRAKKNKITKLRDSDDTVHSTTKELERMATEYFQRLFTADPS
IDHSRVTSLMKPKVTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFFSLGTMPS
GVNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQR
NKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPF
LFLFVADGLSFLLEEKVDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLINPSKCSIM
FGQSSPTAVQNQIKQTLQISNSFEDKYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVY
VMGLFKLPESVCEELTKLVRNFWWGAEKGMRRTHWKSWDCLIAQKLKGGMGFRDFRLFNQALLARQAWRLLDRPDSLCAR
ILKAIYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAKRNCRLRWVSDL
IDQSGSWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNA
LWKCNAPQKVKIFAWRAITNSLPTLENKKKRKLEVSDICTICGVESEYVAHALYRCPHARxFWEAMTVDMKLNPLSNIRN
GDPKVILDLLEQSQPEDQVMLLMVLWRIWHTRNEIVHGKPAPGMLVSKRFIESYVLSLAEIKQHPQASPEKGKHVVDVVQ
KKLHSIKRSREPVPDKWLKPLPGSMKLNVDGSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCCSSALETELLACRDGLA
LALQWTLLPIVIETDCLAMIHLFRDATGAKSELAFLIREIDSLLVGNRDISFSKCLRSQNHISHYLANKGRCDKITQFWP
DNKCTFISQFICEEANE
>LINE1-19_SBi_gag#LINE/L1 26-3148  [Sorghum bicolor]
MADSAPAVPLQPQILRRGEPIPQIHPIPVALHTSNGPPYTDDSASSPDMGDRSAPQFETPPPPPPFHTRRSELDDDLVIP
ATSEATFLQTAHPSYADIVKRHKTEVKEAHLPRRPTARILQSTITTPKGSTYYGRGSADEPSRRLRTDDAPRGRHDDPSP
RRAALHRQPAPGAFNSTEAEWFEARVKHWWRKLRRGSTDEALRCRRASNRASRPLQGRPPAKSAVSSPALRAFRLKTAGK
CFKCLASDHRAASCRDPVRCFRCLGLGHRERDCRRPGTQRPSIPAQRACKEGLPPPPPLPLPPPPRAGQAMAMLGDPETR
PDEDECLIPTSFATEASRREWEDTGAVSWAMSGPPNTGPREVEAAIRDEFRLRHGEVVVTNHSPQAFLIKFQHRHHCSRA
LQQGFAKRHGIEIHFVKWRSLANCFGVSLLFRVRLCLDGVPRHAWDDDIVERIIGRRCALESIDTDLLHPAETKTIDLWA
WTANPSLIPKKVWLTFTNRAKDAKLQSILVTETPPEHWQQGTKHPVIIHLDEIHDYTASTIDDKGNISPGKRRLPKWHLG
VVDGEQVPARAFEEFPHHPPPPRRTHKEGPRTRRPDNRSSKGTKGRYNNDHPDFYMGRGKHHEDDDDYDTSGRGGRDDPG
RFSRGDHSGAGGYRERDRSPPRRLWAHGNRQGGRQRASSALEQAVVQPAELQVPAKLPQLNVLQVTEEAELQRLFRAHAM
ALQGAVQRIVDRAGGHHTRETASLLKSLMYDYIDKASALAGGLGLIQAPPEAATPGNEAWSKWPPQPAPTHQATHATVPV
RDVFGRILSTLPPKATVEDNSIAAVEKALARIELSARESPTIQVPQPTSPSHLCNSELSPEQGPSDVALRDQFSTQPSLT
PAATTQGDSGGGQQLTSSVVALFSKPTEPLLQQPQHAAAVVPTPACAGPRRRRRQRAFDMSAVRRSARLANARPMSQMQR
AQKNLCRKLGLLHDDLEPVENALQDYIAMFNGPLPMDTIAALTEIFNLDTEETNDADDALLRMVGEGVEELRDAAILTAA
A
>LINE1-9_SBi_gag#LINE/L1 26-2184 via tfasty with MIUSE1_TM_gag, 1 frameshift and 4 stopcodons. [Sorghum bicolor]
MLNPSRRLTNSPTMELSGLSFRPGKVVEAEILRKYGLPVCPVPPSPHFFLVLSVGRCKFKLDERSASLILQSVIGGTAEL
FNVRSLGDRVFRFSVSSQVVGFHIYKLRSFEGSSFKIFFNLWHNGGPRYQEEFARWSAEEKAKWTTVSRNKHQPPARPPP
RTGHQPLVRPPPLTGANSVPVRAPAPGRPSSFSNSGVNAHKVTFIRNKSANLAPLNSELNANIHKFKYAGILGARPNHQL
SGPLVCSRCLAHDHQRPSCRNPLRCHSCFRFGHSFGNCVFPPRLMPPALVQRQRNSFPSWKHRPTKSMTDGAGAPASTQA
LLCTQAYDRWDQxLFSPSSFRLPCxILSLPSRSISSSPNYGPLDPSLEALCSGFxRRRRGCPSHHCKLLLPDELSEILLQ
LWxVCSSGPWHSTSPYSSYLLGAENPNCYCSSPPFSQSSMAFRFVDPAPFMPHGAQRQMINGRPLMRRVVIGHVPERNHD
LAIAIFNPMPQGPINFLDIRNILHDFLRNHKGVGYRTMQPCPHGQAFVRFNYLFDKDNLIENSPHQYGDGTITFVAHNRA
WNNRSAVMTHEVWLMLLGLDLDLWTQNLLEKAVSSFGQLMLWEEDHYYMSRAIVKVRVSDLDDIPWFFVFTEGSDFVSNS
WTVQCEVLLTKMLGQDAQDEDFPPGDDDFDPNQFFYHGFGQPGHGPPPPPPAPQAPFILENLQAMGWDAWPNQPVQAENE
>SHALINE2_MT_pol#LINE/L1 3182-6801 via tfasty with OSLINE1_1, 3 frameshifts and 3 stopcodons.  [Medicago truncatula]
GLGSSSAIPDLKYLARHFNPDLLFLSETLVHRNKIEDLRYLLGFDACFYVDRTGRGGGLALFWHNSLNCQLFDFSNNHIT
VEIIDYVLGTWRLTEYYGYPNGGRRTAAWNFLRQLSNQFASPWCIFGDFNDILDASEKRGRNSRPPWLINGFRQAVLDSG
LSDVQIEGYPFTWFKSLGTPRAVEERLDCALANNLWFNLFPNAYVETLVAPASDHYPILLNRTPMPRPHLNKRHFRYENA
WHFEPGFKEMVTNSWQVYSSNRLIPKLFSCAEDMFIWSKYHCQKLKRDIEDCRKQLKNTRLNSSGEExVRMYELTKRMQR
LLSQDDAYWRQRAKTHWYKDGDKNTKFFHASATARKKVNRIISLDDDAGNKITDEQGLHDVARNYFVNIFQKQGSDLSPV
IDVINxSISAFDNEKLKAPFTKAEFRAAMFSMHPDKCPGPDGFNPGFYQHFWNLCSDDIFKECCGWSIMDNAMVAIEVIH
FMKTKTRGEDRYVALKLDISKAYDRMDWDYLRAVMIKMGFNRSLDSFSxNALWIHWMSMCVESVDYSVLVNSEKVGPIIP
GRGIRQGDPLSPYLFIICAEGLSSLIRDAETRGVITGTKICRGAPSVSHLFFFFKADESQAHVMKNILSLYEAASGQAIS
LPKSEIYCSRNVTDPLKHTITNICSRNVPDPLKHTITNILGVQAVLGTGKYLGLPSMIGRDRNSTFSYIKDRVWQKINSW
SSKCLSKAGREVMIKSVLQAIPSYVMSIFQLPTTLINSIEKMMNSFWWGHGRTTQRGIHWMSWEKLSMPKIHGGMGFKDL
TAFNLAMLGKQGWKFLTEPDSLVSRIFKARYFPSGTYLTANLGHNPSYVWRSILRARFIVCGGARWSIGSGASIPILNEP
WLSNGECIDGDITGAHFVQNFTVNSLMNLYDKSWNEQVVRQVFSDDIADKILHTPLIAQVQEDRLIWKAERHGRYSVRSA
YRLCVKELIDSSYLWRPGYWSGIWNLKVPPKVKNLVWRMCRGCLPTRVRLLDKGVQCPTNCVSCASNHEDLAHVFFDCPF
AIQVWNRTGLWGAIQHAMSSTTSAADAIFYLLETLSIELNQRLASTIWSLWKHRNLKVWDDVTETSATVVERARNMFDDW
QLANAPTVIVPSPQHQVQQPIDEGISAAILYPCGSSASAISSGWQPPLSGRYKCNIDAAFFSHLNRTSIGICVRDSEGTF
VLAKTAS
>L1-3_DR_gag#LINE/L1-Tx1 211-1560 named MutsuDr3 by Kojima and Fujiwara gi|34392571|dbj|BAC82616.1| gag-like protein [Danio]
MMDSQSNSTDLFDEAHGENITGRSGERQKENSTGLRGERQLENNTGQEGERNMVNKERQENQQQEMQQQRSGKKYMKEAT
VILNVDKVKEVRVLEIINAVTEKCGLGKILAIRPRQDKDYELTLENEETCDKLMDGLIIKGETCEVKMLQNRDYVVSFMH
LPAYLDDQLILDKLEGWGVFPITKIKRRVYPGTEIEDGTRYLKVRFPREVISLPYSTRLETAEGQQYFRVMHSHQVKTCR
LCMSPDHMVKDCPDFKCHKCEERGHFARDCDAIKCPDCQNYLSKCECWMEEEEEEDEIQVSGQMHEGNSEKESNEEEQTT
TQTIQTTTEEITLKEENAKKEKEKETETDSQQIEHEEEVAWTPMDITSSFKNVLDVIEKEDLKEQSKGTDRETGKHEEEV
EKDKLEKRQTRRSAKVLSKLETARKKGLKKGQLKSHNRYDSLRGLGEEED
>KibiDr2_gag#LINE/L1-Tx1 gi|34392562|dbj|BAC82610.1| gag-like protein and gi|34850481|ref|NP_919241.1| hypothetical protein LOC368382 [Danio rerio]
MNKAVVVFLKSESLINELTVSGIWVKEAFVPITPLSAPATKVTISNVPPFVSNEAILKELQRFGKIASPVKGIPLGCKNA
ALKHVLSFRRQVYMFLNSPERTLEASFRIIHEESSFIIYASTESMRCYGCRDFGHKRFLCPQKNEQRASSSQAETSNADT
LRVQGTDEMTGQQEVSELEVNITGSVEKPGCSTDSNADVSNAKCDESKAQSDTEVVCEGGTEQESGSKESFDDEMEGLSQ
CTDDGLREDDEQWSEVVKKANKDLYTLDQINAFLDKTKGKIGVEISDYFPDLDKFVSSVMSVRKKHNYDELSQQKRFRLR
KHLTNIRSTGKIGKTRGKSK
>L1-3_DR_pol#LINE/L1-Tx1 1565-5404  named MutsuDr3 by Kojima and Fujiwara gi|34392572|dbj|BAC82617.1| pol-like protein [Danio]
MTVFISFFLLLMVLNCVSFNARGLMDLRKFKNVKEKCKREEIIILQETNWKNEVMDIYKKEWDGDFYYSNGDTKAGRGVA
ILIKKNALQMSKVIYKDKQGKCMILEIKYEGKDIILVNVHAPNEESEKKSFFNILRRFLKNYKQIIVCGDFNTVFSRQDI
TEGMVFKSDTGRKELKSLIEEKGMIDIWRERNGKKKEFSRRQIVGNFVNQSRIDYVLCTRNIEIYIEKIRYDETVLSDHK
FVFFNFNTEEIQRGPGVWTLNSEILKNEDYVKKVKEIIEKEKGNQIYNEDKRLWWENVKFLIKKSTLTFCRIIQKNKRHK
EKTIKENLEIELDKNEKDIQKIKEMEGKLKEIEEKKYEGARLRSKAKYVVEGEKCTKFFFDLERQKAKAETIKIIQGAKG
ESIEGNEEILKEIKKYYEELFKTQGVDEVQMSKLLKQIKTKIDEEDKKECDQEIGEEEIRKAIESLNKKKSPGIDGLNSE
FYVCFKEILIPILTDVFKEILQKEELNERMGMGLMKLIHKKGEKTLLKNYRPITMLNTDLKILTKILANRLKEVMPKIIK
TTQAYAIKGRDIADITMSIKDIIEYMKEKKEEGYIISLDFEKAFDRVEHQFLFKVLKKFGFGEVFRKWIKILYKGILTKI
KCNGFLTECFKITRSIRQGCPLSALLYSLVAEPLGLAINEEEKIKGIEIEENKVNKKMFQYADDTTLIVKGKESVKEAMK
IVQQFCKGSGSKVNEDKTVYMKFGKETDLAECTNFKEVEEIKILGVLMGKDARKARDKMWEGFLTDIERRLNYWKLRTLT
LKGKVLILNVLMESKLWHVLYVLEMPMWIEKRLKKCFTDFLWGGKPPRIAFNTVVGEIDKGGLGLIDVEQRKNSLRVKRV
KKYLEKENKAEWKKTMKYFLNKCGNFNMGDGILWMKTKAWMTENLPEFYREILGAWGNFLKQVEYSPHGRENILNQPLFL
NNNILSQGKVLYYKKWIEVGILKVRDILYEFKEGFLTEQYVIDTMEEAKEEYNRKEIEKNLDIIKQAIPKEWIRSIEKFE
KEKETKEVYVKTGEKICNFNECTVKNIYCFFRENVFKEPTANKYWIEKYKNVKANEIWGNMKGRYVETKVECLEFLIRHK
AIFSDVILNKIGMEQSGMCKVCQKEEEGFLHMFLYCQKLEGFLKDCKVLIKGLLGDWDENETEWNRVVMLGWNKNNENKK
IVNLCIMLMKNAMWERRIVAKKEKMVMDVWGIFKRKMERYVEKLYVYHKNENILSELHKILTDKACQVFKEMNWKLPHF
>L1-4_HM_pol#LINE/L1-Tx1 1624-5487   [Hydra magnipapillata]
MDILTIFSVNVAGLINKQKQDTVLNNLKKLNYDFYLLQDTHLNKLQNDELSKKWKGSVFTSAGKTRTGGTAIITKHVLKP
YEKFDDENGIFNYVLTKVSEQKILLLNVYAPSGHEFSQNRKKLFELIEDKIKHINLENVLVILAGDFNMVLNEIDRHPQI
YRKKCASTEKFKKLINKLEVEDTWRLFNPNKQEFTYKATNNISYSRLDRIYLSKKARQNVEIQHEPMAHSDHYNACVASI
TLDKIEIGKSLWIFNNKHLKNKNYLDQIEILIKNKTSQNLDSKKETWENLKSELKEHAKKFCKQQAKNSRIEEYKLKKKF
KNAIKKAHLNPRMQVLSADIKNKLKIFETNRAYGASIRAKIKWRTEGEKCSRAFFQLEKLKPAKQVTTKIKDKKNNIKSE
KDEILKEFENYYKELYTSEKCDIKSQDILFSKTSPIQKIPKNLSKELELPITITEIKNALKTMQNNKSPGSDGLTIEFYK
QNIYLFGELLAEAINETFTTGEMSESQKKAIIICLFKKGDKTDINNWRPISLLNTDYKIITKIIANRLKNVLPLIINENQ
TACVPRRSIYYNLSYTRDIIRICNKNQLDASIISIDQVKAFDRVDRNYLYDTLSFFGFNTVFINYIKTLYYDISAQIKIN
GFLSEKIEINRGVRQGCPLSMILYIIQAEIFSGYIRANKNIKGITVNQKETKIQQYADDTNFYLIGDESIKELGKALELN
ERATGAKLNVTKCQGLWLGKNKTKNKENFLKFNWEENTLKSLGIYFSNRDSLINIKQWNESISIIQKKIKRWQMFNLSFK
GKRIIINQILLSNLWHLAFTLPIPNERIIKYIEKIVENFLWSNSSIKTNQKVSKLPINQGGLSIIDIGEKLKSIQLTWVA
KIFNHTLTGAWKDAATHIFNSYRKTNQGENIFITTHSSSAIDTLPVFYQQLIKNWSHIFNGESDIKNMSIEEILNQPIFY
NNFIRDKNHQTLKPKKETTLNQISKISDLAKVFVPGFLDYQLTGLKQTTFKKIKTSIPRVWKTKIKKECQSYDHNKSNFT
LRNFIHPLKPVLITDLTSKSIYDFLMKKKYSLGVTTLFTRWNSVFEKSMTGTSSKEWSLLFQNIFKRNSNNKANEIKYKA
IHFALPTNSIFKRRGHAPDDLCPQCMKDRETLSHMIYSCEKVQPLIKYTIFLLNKIYPSSKPFKNTFKFYLFGFVENAPK
FYIGNLLLDELLYYVYTIRMRAYHERSMSARISLLKAYISKIKKILQIEHDIAKENNQLNSFLNETKEIRDINGNIKLEN
KLNQFLN
>L1-4_CQ_gag#LINE/L1-Tx1 157-1248  [Culex quinquefasciatus]
MNSQNNRENTFRVDFSNLPKKPSVKEVHQFLARDLGLPREKTKRVQINHVQNCVFVKTADLETAEQIVEDHDGKHVREVN
KKKYTIRITMEDGCTNVKLHDLTEDVSDQQIKRFMSQYGDVMSVTELLWSDDLDYHGISSGIRSVKMVLKRPIKSYVTIQ
GQCAYVKYAGQQSTCRHCGEYVHIGIPCVQNKKLLVQRVSVNERLKPGAKESFASVLKSGSTDTRQDDNISSSDDEERDS
AAMSEDDDEYTVVRYGKGKHPKLPKPIKSKPRQETIKVNPIATPGGTPLDAVVEQETDKEESVFKTPLLLPGKHKRNDGN
DTDTSTASTASNGKRGPGRPRKTKPTDVDTQPQASPSADEPMQP
>TA11_gag#LINE/L1 228-1688 [Arabidopsis]
MEMSLEEKDEPFEMPDLPEFLSCERNKLSLIGRVLNPSCQPMKHLIRNIPRKWQKEGRVTGISLTSERFQFIFDSKHDLE
DVLPKGVHTYNDWSIVVDRWYENPPDDYLRFMLVWVQIWNIPVNYYTEKAITKLGDLIGEVKEVVFNPVEPQLHEFVRVN
VLFDVSRPLRRSKVINFKNGDTATVRFHYERIQKRCYECQRLTHEKDLCPILIKERQDKASARRQGISIPKAPPPSVLQE
SDPLFGVLKESQVGVDPNTGRPRIAPEVLEGMRQYLRVANDEERSIRVDQVIKSVRDAEKDPFTQKTVLQLEALPIVHHD
MLREKGVVFDYDRGDSSSHNGGLNLNSSLRLEESTQSKDARDWLTEPVNSLASKDVGCFLALSQPFPVSSTVYSPGLFES
DSTGTIRKKVKQRNRPPNHARKLKLKDPSSIFVDHSLKEGSTSGTKDKRKAVDMGPSAAKIFKLNPKLVVPNEGPSKA
>SHALINE9_MT_pol#LINE/L1 1-2371 via tfasty with ATLINE1_2_pol, 5 frameshifts and 8 stopcodons. [Medicago truncatula]
DNVIIAxEIVHSMNKKKGKNGYILFKIDFEKAYDRVDWNFLRITLRDFGFPTSIITLIMKCITSFTLSLKWNNEKLESFN
PQRGLRQGDPMSPYLFVFCMEKLSMLILEKVQSNEWHPIKIFNNGLAISHLCFFVDDCLLFTQAKSSQARIVKQVLESFC
HASGLKVNLKKSKFMSSANISRKKVNKFSSIIHFTHYTQLAQYLGFPMLSARIKNVDFAYIMDRVNSILDGxKTKLFSRA
GRVTLAQSMVYSLPTYSMQNLWIPEGVCNQIYASIRQFTSGRKHSHWVNWKMITQPKSRGRLEIRTDRASNISIMGKHVW
DLLHNPDKLWVNFLSSKYLHGISILVATNYQGSSCVWKAITKTVEVLKFGFKTRIGREDVSLWYDKWLEDDYLCNLVTYV
HISETNLRLKDIYHTTGWNFSHLITQIPLNIQLQIQSILIDxSSQDIKIWTHSPSGMYSVKSGYQWLTSNSLYFAGxTQQ
ETxHWIWKLNLLENLKIFILLAMHGNLPTNAFSASRYLTLYSSCKRCGSSIESLFHTFWSFPSLIGIWDALLFNKDTNFN
SQDFNWWLKHHSLDPNGNIFIITCWVLWKAQNHKVFNGNDxVNWVxLSHIYSLHSYVVVYLSNDATQKPIRQVKWIPHLD
NIIKVNVDGSSLSNPGRSGFGGLIxKSNGDWLLGFYRFCGITSCLAAKLYVIFHGLRIAYDAGHKNIILESDFRMALDLI
MSDVQSHHPHAPLISQIVQLQHRDCIVNFHHTLRQGNACADWLAKHDASSSYALKSWIFLPSSTASFPSE
>SHALINE6_MT_pol#LINE/L1 1742-5863 (3 stopcodons)  [Medicago truncatula]
MSFVAWNCRGLGNLRVIPKIKFLVRYYKPDIIFLSETIIQVNKIEEFRYLLGYDSCFAPDRVGRGGGVALFWRNTINCSI
VNYSSNHISAKIEESNGHWIFTGFYGYPEASRRRDSWNFLRRLASNINLPWCLMGDFNDILHADEKKGRATRPNWLIRGF
RQAVQDANLVDVHMEGYPFTWFKSLGTPRAVEEKLDRALATNSWMHLFPNAKLENLVAPSSDHFPILLDRTPVVRPHRSK
RSFKFENAWRIEDGLNEVVHNSWLRSAGDGVINKLATCAEDLMQWNxTHCNRIQKDIEDCRHQLSRSRGVNGIQDEIHFD
NLRKKMNHLLVQEDMYWKQRAKTHWFRDGDLNTKYFHVAATSRKKVNKILSLDTDEGIRVTEDAGMRSIAKNYFEELFEG
QESVRSPVVNLLDPVLDNEDNDQLIAPFCIEEFKEAMFSMQPDKCPGPDGFNPGFYQHFWSVCSDDIYNECCxWLNEGQF
PPSLNSTNLALIPKGSNQKTMKDWRPIALCNVLYKLLSKVLANRLKKILHKCIADSQSAFVPGRSILDNALVAIEVVHHM
KTKTRGKDKSVALKLDISKAYDRIDWLYLKDVMHKMGFSDKWIQWIMMCVETVDYSVIVNKEMVGPIIPGRGLRQGDPLS
PYLFILCAEGLSALIRDAENREVLQGVRICRNAPRVSHLLFADDCFLFFQAEERQANEMKQILTRYEAASGQAISLPKSE
IFYSRNVQDPLRQTITNILGVRAVLGTGKYLGLPSMVGRSKKATFGFIKDRVWQKISSWSSKCLSKAGRKVMIKSVLQAI
PSYVMSVFRLPNSLLDEIEKMINAFWWGHGGANNKGMRxLSWKKLSVHKNHGGMGFKDLAAFNVAMLGKQGWKLQVESDS
LVSRIFKARYYPNSSYLDSKLGHNPSFVWRSIFGAKVVVRQGARWKIGSGFNIPIINEPWIGEGSSIPPIGPDMLALQSY
SVGHLMDHNAKVWNEHLIRQLFATETANNILNTPLHQQVLVDRLIWKAEKDGCYSVKSAYRMCIEEIINNDHLRKPGYWS
GIWRLKVPPKVKNLVWRICRDCFPTRVKLRSRGVNCPSNCVMCEDPHEDSYHILFHCKAAVDVWNAANVWHLISPSLDLF
DNASDIIFHLLKILSTTQIENIVTTIWSIWKARNLKLWQQVTDSPTTILVRATHLLEGWRSANRKQNPPNQSHIDTTLPR
NHNIQVVDGVSNIRWRKPRSGRLKCNVDASFSEVNNKIGLGICIRDSTGSHVRSKIMFFSPLCYVDVGEALGLYHAIRWI
HEFQLENVDFEVDSKRVADYFNKGRGDVTEFGSIMDSSIHFCRSLLTNSHVEFTRRQANEVAHNLAKAATSSSSFRIFDE
IPTCITELIFNEMI
>SHALINE10_MT_pol#LINE/L1 1275-5320 via tfasty with OSLINE1_1, 2 frameshifts and 3 stopcodons [Medicago truncatula]
MKILSWNCRGLGNPRAVRALLRLTRIENPQIVFLMETRLKANEVESVRNKFGFKYGLTVDCRGAGRERAGGLALLWMEHM
NISIKSYSLNHIHGICDDEEGGEAWDLTGIYGHPEEQNKKKTWNLIESLGRQISGRWICYGDFNDIFDSEEKKGGNIRSL
SQLSLGRQVVAECSLIDLGFDGYPFTWSNGREEGENIQCRLDRGFGNEAFINRFSPIKVIHLPRFGSDHAAILFCLEYIN
xRNRRRKRPFRFEESWTKEARCEALIRQSWNSTTSSCTEKIEAIKHLEGEFDDHNMGKLKKEISRLEKRMNNQSLWSGND
EDLCSLKRIEKEHEELLKLEETMWRQRSRAVWLKDGDKNTKFFHGKASQRRKVNDIKKIKDEDGVWWKGEENVEKVLINY
FADLFSSSNPSDIDETCEVVKGKLSEEHKNWCETVYTQEEVKEAIKQMHPLKAPGPDGLPALFFQKYWHIVGRDVQDLAL
NILNEDKEPDEINKTFIVLIPKGKNPSSPKDFRPISLCNVVMKIVTKTIANRLKHILPDVIDEEQSAFVQGRLITDNALI
AMECFHWLKKKKKGKKGMMALKLDMSKAYDRIEWTFVQQILKSMGFPEKMVELILRCISTVSYQILINGQPSNSFYPERG
FRQGDPLSPYLFILCADVLSGLIHKEAxYKKIHGIQVARTAPKISHLFFADDSLLFARANSEEASKILNVLTTYQKASGQ
MVNLDKSEASFSRNVHKEEKNMICNKMGVKAVESHSRYLGLPVLFGRSKKVVFSFVIDRVWKKLKGWKEKFLSRAGKETL
IKAVAQAIPNYIMSCYKIPEGCCNDIESMLAKFWWGSNKDQRKIHWMSWERLSKAKVKGGMXFRGFSDFNKALLGKHCWR
LXTGEHSLLERVFKSRYYPSGNFLEAKVGYQPSYAWRSIMSARDVIEKGGRWKIGNGKSVRIWNDNWLPDMRTLEAKSAV
FTLQDDACVAELIDEDTKQWNRELILSSFNRYVAKKIVSIPLSLRLPEDKMVWNWEKDGEYSVRSAYHLLCDEKSKNPTG
TIKSQRDKLWKEIWNAPIPNKIKNFMWRLAKNILPTRSNLQKKGIILDTLCPLCHSEHESSHHLFMNCNMLKLSLFASHL
GSHIPTDVDLHDWMLKWLTCQEPIGAQLFCTILWKFWYARNQAVFKGSPLDPSLLADDAMYFVHEFNEANPRRGRRTVQE
VPHTQELPTDFSVFVDAGCFADGPTGWGLNLKNRRGDTCLSKCKXDDIDVDPLLAEALGVRWALQVAKDQGINSIAIYSD
AANVVNCINRKSNFATIDMVIQDCRDLMSSLxNVCVIXVSRDQNFDAHNLASLAKIVGNRTWLRVVPN
>SHALINE21_MT_gag#LINE/L1 32-1084 [Medicago truncatula]
MFDWQAESAPSATPSATTVPAPPNPPVAASFAQALSASQPTSSNDNLPQPSIRGETLSIKITQEVYEKGMDVCKRNLRGR
LVLNKGDKPYSTKDIELKLQKLWKTSGAWTMLSLGRGYYEFFFASEDDLRTVWAAGTVNLKPGVLRLFEWTKDFNMHTQR
NTHAQVWIRLMELPQEYWMERTLREIASAVGTPLVIDNATTKRLFXHYARILVDMDFSRKIFHEIVVEREGFAFPVEVVY
ERMPDFCTHCQNIGHDVTACRWLYPRKEKEDNTAKEKVAQGKKQVPTKKTEWVPIKDNPSGIGSSXAFQQPISRPAATEE
XIPTQHFCSTEPTCNPQQHLFGLLQLYQHVP
>SHALINE15_MT_pol#LINE/L1 2542-6054 via tfasty with OSLINE1-3_pol, 2 frameshifts and 2 stopcodons.  [Medicago truncatula]
MKILSINIRGLGASEKRREVNRLVAERKPSMLCVQESKVEVVDEYLCRSIWGPDPMAFSFKPSVGASGGIITVWDPSVLD
VWLTVNIANCLMIKGSFIKNHEMFCLVNVYAPCNNRGRQILWEAISNLFFVHGDVAWCVLGDFNVVRNSEERRGRVENIV
STDCDFFNQFIDSNSLIDLPLCGRNFTWYRGDGVSMSRLDRFLLSESWSTLFPNCIQVALPRGLSDHCPILLTIDEENWG
PKPLRMLKCWADIPGYGEFVKESWQSFQVQGWSGFILKEKLKRLKERLRSWHSNHTLNINSKIQGAKQRMATLDAIGENS
PLSDEEVNEIHMLSADIMAFSKLQASMHWQKSRINWLKEGDANSKFFHGIMSSRRRSNSIISLSTEDGIIEGVGNVRHLI
FQHFQNHFKRRPQPWPDMSGLVFKSLSMADGADLIKPFLLEEIKAAVWDCDSFKCPGPDGINLGFFKDFWDILKIDLLNF
FAEFYHHGKLTKGLNSSFIALIPKVESPQRVADFRPIALVSSVYKILSKVLANRLRKVVGSVVSASQCAFVKGRQILDGI
LIANELVDDAKHNDKELLMFKVDFEKAYDLVDWRYLDEVMDKMLFPRLWCSWIMECVTTATASVLVNGCPTDEFHFERGL
RQGDPLSPFLFLLAAEGLNVMMSAVASNGLFTSYSVGTQILVSVSHLQFADDTLLVGIKSWANVRAMKAVLLLFEAISGL
KVNFHKSMLFGVNITESWLHEAAVVMHCRHGRLPFIYLGLPIGGDPRKLIFWYPLVERIRRRLSRWKSKNLSLGGQLVLL
KSVLSSIPVYFLSFFxAPSCIISTLDSIFLNFFWGGGEDSRKISWIKWDNICLKKENGGLGVKRLREFNLSLLGKWVWRV
LEDKESLWNVVLRAKYGEFGGRVRFCEGVGSIWWRQLNQVRAGVGLVESTWLVDNIGRKVGDGSTTLFWEDSWLLNVPLS
VAFSRLYELSENKGVMVGVLGGGDGYYLHGRRSWWRSVWSSCINFVFQVDIADRWVWRLHSSQVYTVHSAYSYLTAVDTN
ITADFDQFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNILEATNVSCGALCGNEEDMDHLFFQCNYYGRLWLMISDWL
GFVTVLNGNLYSHAHQFCALGGFSKNSMQAFTIIWISVLYTIxKDRNRRIF
>L1_AC_15_gag#LINE/L1 793-1839  [Anolis carolinensis]
MDKRSPKVTGPGMKGLISSYATVPAASEKIKKQVSTAAAAAAPDQTLLEIRSMFENLTQAIGAVQQDLQKIANRQDQMDN
KLAKLDKDQKSVKKRVERLEEQSQTYEDHHEQVLDAIAMQELKACECSLRIRGLKEGLERESLISFIANMLAGLLKEQDL
DIIHASISSCFRINSAFARQKKVPRDCIVQFVAKTFKEIVLKKQYETPIVIEGKKILMMKEIPGRLLRKRKEFNALVVKL
KNKGTPFRWLFPKGVSFYHKSKRHYITDAGKVEQFLRKYAQDFPGGEQQLAGDESQGHRRGKGVPQERKERKQKEQEENE
KEGTQTDEEKEEEDEVEEVEEDEKSGGTD
>L1_AC_10_gag#LINE/L1 1559-2643 via tfasty with L1_AC_2_gag, 1 frameshift. [Anolis carolinensis]
MAYKLRDRDNKDPKMLQKRTSISEEPNIRDMTDTILKELQRMQEKQDAYQKLAQEQMLDFKKEIKEELRTMKQEIGTINQ
ELQDLKLEKAEIRSSQEKIRKEVQLLELGDKIKSRQELLESKELEYQLRFRNVWEEAKENIRRIIIEIIANILNCSTDEA
EDRTDRIYRINTNYAKRNKTPRDVIVNFTKKIFRDEILKINNTNTITFKGEKIVILKEYPTETLNRRQKYQFLVDELKKH
KIRFRWEKTEGLMTTYKGEKYWITSEAKARNFYKKLKKETEEEEKSDEEDQFRTSKSRANVYKKRALDQEFLEHQSKLKK
GQDNQEEKVEDKEGEEEEEENQITLSEEEEERTEGEKREEAL
>L1_AC_15_pol#LINE/L1 1952-5680  [Anolis carolinensis]
MSVQNLKIMSCNINGLNNGYKRKKVVHFLQKIKSDIVCLVETHLIYKDSHLLKRERLGHLFTACNSKKTNGVLFYIKKDL
APEKIFCDEDGRILIIKVYIQKAPVLLVGVYAPNNKQKLFYKKLTRILAEYGEKEMLWMGDFNGVMVPKEDRDSKVKKDR
KEGRLPGSFLREIQYWELYDIWRVHNPTRKEYSYYSHRHGTSSRIDLIFGTKELVGKTEKIELLPRVLADHNPILMKLRV
GYKRNRAWRMNDYILKIKSHREKIRMGINNYFKDNAKEEMKEGIVWDAGKAVIRGLLIQQNSIWYKGKNKAQLELLSKIR
TKELEIEKEKGTKTRLQGELKKLHQQYEQLIASEIERKVMYNRYNFFENANKPGKLLAWQIKDAKKKPLIMRIKNKGETV
TDSQQIQKLFEEYYANLYKKTQGEIKTISQYVEETNLEQISEAMKADLDKQITPEEVIRTINMAKVNKSPGADGLSTLYY
KTFKEELVPQLVSVMNVVLKKGELPESWKESIIVLVPKQDKDLDLIKNYRPISLLNCDYKIFATILANRIKQALAQIIHK
DQVGFLPGRQVNQNIRLILNTLEVAEKDPNRDLALFFIDAEKAFDHVRWDYLEKVLEKFEVGHQFKRAVGAIYTNQRARL
NINGQLSDYIDIQKGTRQGCPLSPLLFIMGLEILNVRIREEKEITGLKISDQELKIRAYADDIVCILTNPLQSIKKVLDI
IQRHGDISGFIINKEKSKFLVKNIDAKSCKKLEAAADCEVIPKVKYLGIWVTNKNINLFQDNYVKVWEDIKKDLTRWQTI
PLTWMGRIAVIKMMVLPKMLFLFQNIPIIKGINFFEKLKRKITDFIWAGKRARIAYRNLIDDKGRGGLSLPDLRTYYEAA
ALSWMKEWIKLENKTLLNLEGYELRFGWHAYVWYDGDKLNKDFNKHIIRGGLLDIWKKYRKGMEPKTPLWLRPLEAVIRP
ALSVETRTYKEYLIRENEEWKLKGREELEINDWFRYHQLHERYKKDMRVGFATKKSELERIWEKGNKGLISRLYKYILSY
NMEDNTVKTVMISWAKDLGRPIELDNWEYLWNKEFKFTISGSIRENQYKMFYRCYITPATLAKIDKSQQGICWRCRKQKG
TFIHMWWTCMTIQAFWDKVIKETNKMLHNKIKKSPGLCLLGLHRENNNQKDQEIYQYSFAAARLTIAKDWKGEKGLTKKD
WRERMREYMLMAKLTNNRKNKSNEDFLETWKLAIAYLNKESVT
>L1_AC_20_pol#LINE/L1 1378-5106  [Anolis carolinensis]
MGDKLKMCFLNTNGLASDLKRSRIIQLAKKSYCNVLCLQETHKHQKDNKQLINIPGWSVIAEARGTNKARGVAIIMKNSL
KLEILETIIDKEGRYIVLICKINGKKYTIGNVYGPNKGQKKYFRKWFRKVQEIYQGELIIGGDFNMDLRKNKDLVKKWKM
EDIFEANLIKQKPTYFSQSHKSFSWIDYILIKNTNRSRILNMETQPIWISDHAPIIVELRIEEPDETEAIKTWRYKNFII
KTEKLKNELSEEIKNYFKENRGSASTETVWDTAKAVIRGYCIAKEVAVKKQQDRERKRVFREIEETQKLLQNKYQVQVKA
KLENLKKQLEEIDNLDLWKKDIFIKNNFQRQNTNTTKKLANYLKNMKEKGRVIQLKNKYNKKVNSTKEIREAFVDFYQEL
YKKQIHGEFDEKIQKIIDREDNRKLGTEISYQEIEQVIDTLKNRKSPGGDGYTAEFYKEMKEIIIPELKILFNNIMKGGK
IPDTWRESEIITVRKSGKDPEDPNSYRPISLLNQDYKIFTKILVNRIEEIISKIVKEDQYGFIKGRNIAHPIRNVLNILN
HNKKRKFALLKLDIYKAFDSLNHKYLLQLMGNYGFDISFIKIVKELYSNSRARIRVNEGLTKYFKTERGVKQGCPLSPLL
FALAMEPLADRIRNNGRIKGYQIRNEEVKINLYADDILLIMENPAEAIHEIQIILKDFERYSGLKVNMSKSEMMIYNMGK
KEQKELQTKMGDIKIIRNKIKYLGITITKEITKLKAANYGAIWKKIQEKLKAWGDKQLSIPRKILALKMCIIPKLLYLFQ
TLSIKIDYRQIKEWDNTLREWIYGKKRNRIMKKIQYTPRRLLGWGFPNLQNYYEAFQLRSLLEISLKGEDKWIKVENEIN
EGRGKYGLYTRDIKEIKEKLTGPRKIEFECWQKWQKLWANKISGKTPIKSMGLPERLVNTLEEKGLRRVKDMWKQDGGII
NWLDLLEKGGKEYWLKLRGIWEKVKKEGAQPTEELKVDKLLNAREKTSKGTVAKIYNLMVEDKEFMIRAIRNKWNGVKIL
STQEVDEIIRNINKIKTEKYNELEKKMVLRWYRTPEQLSYMIKGKNSKCWHCNKEKGTYSHMWWECSELKKIWLMIQGKI
QDLLQITIQINNDLLLWGVLDHPSIKTECQELLKVTIRAAHAVIARGWRDKSKWTLNNWNDYLYDQVLLDITGIMTNQVT
RMNKQKDITNRWKDYFNWVKNGGANDYIKEKIQRLYLWLDLQD
>L1_AC_18_gag#LINE/L1 239-1360  [Anolis carolinensis]
MAEGVEWGRKLDQILQTLNELKISSDSLKKGNDELKEQVEMINTRLGSMESKVQQYEGKFMEMQEETRKQKEEIANLKKH
LESANQKLLNKIADQEDRSRRANIRLRTAGQDFQMSDNLKQNIVSWLQTLMEISPDDIERSHWAYRGRKKPRDILIRFSR
EATKEKVYNQLRKIKDLTLAGKKVWPLLDLSSETLDKRAQMKEITKVLEGKNQRYTWAFPATLIVYRDGKLYKATDLASG
KTMLRLLRFCTEGGVSDETEESDNEEVHRSFKRKKGSKKAKDTLQAAGQIRSTELEAADRGGQIESCSTQSISVIGDLMN
REGEHGQDLQETIDLRNLKQMDLDQIRTLEKQLRELKKQKLKEETRRMETRSKM
>L1_AC_7_gag#LINE/L1 1225-2286  [Anolis carolinensis]
MAVPKFKQDKDLKDTKGTTRRPSQTEDLALKDILKEIQKLSDKQDQNAEEQKRFQREMHQEMLEMKKEIKEDIALIKNEI
KATHEEIIDLKKAREKMEKSQTKFQKSVDEFQKKSMKLEKAQELMEQKEMEFQLRFRNLEEETNENIRQKIIQITAKILQ
RTEQEMGNELDRTYRIQTNFSKRNKVARDVIVNFVKKRTRDEILMINSRKPTFYKEKKVIILKEFPIATLNRRRNYFFLT
EELKKRKIRFRWEKLEGIMVTFKNEKHWLTSIDKAKDFYKELMKGNHEDSLELPLPQRKKKRYHSPQTGDATTVTNTMEG
IAEMNLLDLDSDEKGEESEEEEPVTSLTEPKKLI
>L1-67_XT_pol#LINE/L1 1594-5203 via tfasty with L1-11_DR_pol, 1 frameshift. [Xenopus (silurana) tropicalis]
MQLHLVTVNAKGLNSPAKRKMVLNWARDKNIDILCLQETHFKATYHPFSQTSFFSEAYYANAPVKKNGVAVLIRNNSPIT
VTNTMSDPHGRFIVLNFKVASKNYTLLNLYAPNTQQTKFIAKTLRQISSAINDTTHLIITGDFNMVPDPYIDKFPVLQGP
SMRTAYNLSRRFQQLLKIHGLYDAWRAWHPSEKDFTYFSPPHLSHSRIDLLLLDKVLLQTTKKVYIGIATWSDHAPVGII
LKLNSTPPPFSSWKMNNSILSNKANRELLTNLTNEYLKNNSLLEYNPEVIWCAYKAYMRGHIIALTSSIKKKDKNTTGTK
SQLSTETTNLKLKPTEACSQKVASLKKQINDINLEKVAFQLTMLRQKYYSLDNKCGRLLSLKLREAKAKTRISSIKTADG
KTITNPIHIAEEFANFYSKLYNLQRDASTPQPSASAIEQFLSTFSLPVITEGNLAALNNPITADEITQAIRMFKLDKSPG
PDGFTNNFYKTMAQPILPMLTPLFNELKNPTTHREELFQATIITIPKAGKDPTSLANYRPISLLNTDIKLYAKILATRLN
PILHQLIGNDQVGFIPKRQAPDNTRKLINIALHANKNKTPCLLLSLDAEKAFDRIAWPFLSAVLSKYGFKGPFLDSVMVL
YSKPTARICASGYNSPFFHLTNGTRQGCPLSPLIFALLMEPLAEAIRTNPAIKGYTIGSHAYKISLFADDVILSLTDPAE
SLPSLFNTLSQFSLVSYYKVNTSKTEALPIWIDNHTLTQLKASYLLDWQQTSIKYLGIKLCISVKNLFKENFNPLLLKFH
KSTQEWMYKDISWLGRIAAIKSNLLPKILYLFRTIPIQIPNQYFQSLQKLISKFIWKDCKPRLSVRILCKHKTDGGLGLP
HFKKYYQASHLNFLQKIYLPVNQPQWVQQESDMALSQAAQFSHLMWIHPRTRPQQSKLFLTTQASLKIWDNYQFTDHISE
GLHPLHPLVGFQKLIPNLNLTSWISSGLTKVADLYQGHTLLTFSQLQAKYKLSKNTFFTYLQLRNYLKTYQLDRPKNLSK
QQLTLTNVMKQPSRISLLPIDAQNTISYLNNWEQDINAPIDPIDWNNAFLLITTTTNSVRLLETSVKLMYRWYMVPLKLS
RIFPSSASNLCWRNCGQIGSFLHIWWDCTKISLYWKSIFDMLQNLFHTPLPCTPRLALLNLDLDNTEWNKKTLITHILAS
ARF
>L1-63_XT_gag#LINE/L1 105-1238  [Xenopus (silurana) tropicalis]
MIRAQKYKCDMGKRRNKEQAGTMSPYLQKASQSNRPEPIQDGVEIEREPAPLSPMSSSSGLEAPNPQSPGQSQPALTLTP
EIMDSQTQPVTAQILTEQLQNLQQTLTSSITKTLSEAIQHLRAEIDELGERTDKVESITDDLAQRYATLEDDNTAMKEEI
YQLKLLCEDLENRSRRQNLRIRGIPEEVGPQLLQQYLRDLFLSLCPDLTDETCRLDRAHRSLAAKPPPSNPPRDVVICFH
YYESKETILAKSRQQQDLTFRNNKISIFSDLSPTTLARRRELRPVTQALRDNNIPYRWGFPFRLMVNKDGKQYTLQDPSN
NKSFLSRLGINAASKDQAALYGPTRPRPQPIWTKVQAAARRSPTASQAPTPLRESTWT
>L1-68_XT_pol#LINE/L1 962-4634 via tfasty with L1-11_DR_pol, 5 frameshifts and 1 stopcodon. [Xenopus (silurana) tropicalis]
MAVNIITHNAKGLNIPQKRRQALRYYKACKGDIVMIQETHFKTGQIPKWWDPAYQTYTMRHTQGNLRNLNFQLQESIIDQ
EGRYLFLKGTLNTKECLLGNVYAPSQADAQFYKGISTILDTNWKPLVIITGDFNTIADKHMDRYPPAQAGESHPNRSRLQ
SLMREHNLIDTWRLANPTGRDYTFYSHPHKTYTRIDYILLNQPHAGKIAKSTIGEISWSDHAIVTTTLVDLLTERPNYTW
RLNEMLLLIPEVVTSILADLENYFLENDTGDTPTPMVWQAHKAVIRGTLIKIAAHRKRKRQERINKLKAELKNLEMQHKT
HRDNKIYPELVKIKTELNLALSEDTYKAMLWTKQKFFEKANKPDTLLARRLRGLRKAQTIPLIKSKTGAITNNPKQINSA
FVEFYSELYNGEKLSKQQTxYRVLHRYLQSCKLPKLNHDQLTFLNAPITMEEITDTIKSPGPDGFTGKYYKTFKETLAPQ
MVKLYNAFLTDTPIPPEMLISQIIVIHKEGKDPKLCSSYRPISLINTDIKIFAKILAERLNLLLPNLIHPDQVGFIRGRD
AADNIRRTINIIDQVHANKQQTILLSLDAEKAFDRVDWRYLNTTLEAFGIIGPFLNAIKRLYTNPKAEVKTGSLRSPPFE
IRSGTRQGCPLSPSSPLVFALCIEPLAQTIRLSPDITGVTIGEDIYKLSLFADDILLTLVNPQIALPNLYRELDKFGKIS
GYKINLTKCEALNLYIPHDRAIAMAQSCHFKWKPKAIKYLGVMLTKNSHDLSKNNYSPLIRLKKDIQRWHGYSISWLGRI
YCIKMNILARILYLFRTLPIKYPKTEGKSLQRAMDKFIWEGKKARINRKLLQKSKYKGGLGVPDLFGYYKAAQFAQVQAW
HMLDGQPRWVTLEQALVQDTKLSEIMWKPTPSAILKHGPPCIAHSLQLWATYKYRDKLCKPKSLMTPLLQNPTFLPGTTI
SDFRWWAQNGITKIGDLLTGSRVKSFNTLKEKYNIPPREHFRYLQLTHWVKTLLRGGCDGSYSKYESECKKGMKTKGTIS
RIYYHMIHETNSNPPKFQEQWSTDLNHPIEEEAWEEVYENITKISTNTLLKENGYKTIARWYMTPQKLHKIQNNIPPTCF
RGCGEIGTYMHMWWECPQAKNVWELAFQEINACYGLTPEPKIALLNLFPVEAFHNESTKRLIIKICSATRMVIARHWKGP
IPQAWAAIEAKLGEIMVMETIDKQ
>L1-98_Cis_gag#LINE/L1 3-1193 via tfasty with L1-99_Cis_gag, 2 frameshifts. [Ciona savignyi]
ELYNKLLSARGVISARLYESDSVNVAIGWVPIPFPDDLMRQKIEHHYGTVMKITPKIDKDGLKTGIRIATMKKEDLEQNP
IPSYLYINNLEFYVSYFGQKYTCKYCSGIGHKQADCKKRKADYPELGKTERTTRTGKTLEPRPPRSNSRVTVSDVIDMHF
ADPLVKTLNNANDNTKKDAPTGSSRGATDDAIDVLACDPPASVQNDDDSTTTDTFTEKALQCHRTKRSYPSPEEARNTRV
KTISLSEKKIPVNCTKCNKEGLAAERKPENYFCWSCEEDFQVTKTCCTGDFFLVQSNKKSTRCPLCKGKMIKLPCCDTHQ
PEFVSEDGTLQCTACQRYCCTDCKCGRINYFPNKQPSRPCENKSCDHRFIHCDCRKRYVKEIPPHQPFLCKCGVQHD
>L1-95_Cis_gag#LINE/L1 13-1185  [Ciona savignyi]
MPTKSVVGIVERRGKLFDITCNDRPSIQKLHEKLRIDAKVASVYLYESDTTNVAIGWVPIPMQNEDIKLAIEEKYGPVLK
ILTKKDATGWLTGLRVVTMKNEDLEKNPIPSYINIGDFELYVTYKGQDFTCKYCGKHGHKQAECKQRALDYPPFPRNLPS
AQQNQINKDDHAPIKDVPTATSTPTKSKQFSSNLVLRQMNAEKITIEDPKCRKRDRTNRSPEATGPEAKSISMCAAKFQF
KCLTCSKEGAATDQSTNFQCWGCRAEHIMVEPCCQPEDRFLVKHDCRATECFYCSTQMRKMPCCQNFIPQDARGNNLFNC
MDCEKLSMLCKCTYLNLLPTKGKATRCVKCKTHIINCGCGKATSTTIHEGTAHMCECGTEFDIKKLDETFK
>L1_Canid2_gag#LINE/L1 L1_Canid2_5end_1693-2586 1 stopcodon [Canidae]
MTRRKNSPQKREQEAVLTARDLISMDISKMSELEFRITIIKILAGLEKSIEDTRESLSGEIKELKSNQVEXKKAINEMQX
KMEALTARINEAEERISDIEDKMMENKEAEKKRDKQLLDHEGRIREISDTIKRNNIRIIGIPEEEERERGAEGILEQIIA
ENFPNLGKETGIQVQEAQRTPLKINKNRSTPRHIIVKLANLRDKEKILKAARDKRSVTYKGRNIRLAADLSTETWQARKD
WHDIFRVLNEKNMQPRILYPARMSFKIEGEIKSFQDKQKLKEFVITKPALQEILKGIL
>L1Ci-C_pol#LINE/L1 gi|34392586|dbj|BAC82626.1| pol-like protein [Ciona intestinalis]
MPLSLITYNVAGLQNPRKRRSIFYFLRQKKFDIICLQETHTTASCLRQWELEWVGEILASHGSTKSKGVAVLFSKKLSYS
KQDVCVDNFGRYIIMNLEITDQRLTLCNVYGPNQDSPQFYGNLFTLLTKRQAESGIENCIISGDFNCVLNDKLDKTGGRE
KHGNRRAKTTILQAMNDLELYDVFRIKHPNSKQYTRMQKRPHTASRLDFVLATSEILQKTTQIQIVLSTQSDHCIVKLVL
NLDKIPRGRGYWKMNTSLLEDAKFVENTKKWTAEFLINNDNGAVSPQVLWEALKCNIRGYIIKYASENNKKIKARQTNLE
NKLADLQNLPQPHDECTMGKIVQTQEQYDDIIESYSKSAIVRSRVRWAEYGGKNNAYFLNLEKRRMEKKAINRLNSNANI
ETDQQAILRLLKEYFETLYSSSNNPGRTSKSKIKEYTNSLMCPRLDAEKANECEGKLTVDKCYEALKTMQNNKSPGLDGF
PAEFYKVFWKEINSTLVNAFNHAFEKGAFSGQMNWGVVTLIPKPEKDLLYPENYRPITLLNADYKIAAKAINNRIKNVLT
TIIAPEQTGFIKGRYIGDNIRTLFNVWDHTTDQGLHGALLFLDIRKAFDSVNWDFVNAACSSFGFGKDLSRWIRTFYVDA
KCLIINNNHMSTPFRVERGVRQGEPCSPSLFSLAIESLSLAIKRNKSVKGIPIVSQDIKISLFADDALLFLDGSEKSFRA
AFAEATEFGNHSGCKINIAKSNAMYIGKKQPNSPHQLSSQGLSWPNTFIKYLGVKIPVNRNKTNLFTINFESIGKEIQAV
TKPWLARSLSLLGRVTIIKALAIPKLLYKLSVLPVSLPKQFFKEIKRKLFTFLWGSNWERVGRKTLCSNIKEAGLEMIDL
EAYAKSIRFSWIRKLLDTNHESHWKNIETKITSLNTMICVAASDLKLTHKEITKQTPLSTFWSSIELWRECVSQFWPQDK
VYNCAIWLNKKVLFKRKPIAYENFIKSGILMYQQIIDNNSDYCSFTILCEKYTLTNNNQNHADYQRLIAAIPTTWETYTT
DRPERKTAIDRLRKGISDNLPTAKNAYEYFVSPNKQKPTKQQNKWEVTLQRGPLNWSEIYKNLYDCTFETKLRSFQVKIN
LRAIVLNDKLHGFGIIETDVCTFCGVNKETIYHLFCECKHVQVYWESVSAWMDSVLCHKTIISNTVKLFGIHNDCLEKCV
LNLMNCMLVVARFVIYKCRIQNLKPNIEMFIYAMNRSRANEKAVAIKHNKLLQYKLKWNANLR
>L1Ci-B_pol#LINE/L1 gi|34392583|dbj|BAC82624.1| pol-like protein [Ciona intestinalis]
MNTMLILVLENFNNNFPMTVNFATFNVAGLRNDKKRKTIFRYLQNKRYWILFLQETHCSREKQKLWEMEWQGEILWANGT
NNSRGVAILFNKRLSYEVLNHAADPIGRWLMATIKINGTILTITNIYGPNRDEPQFFEDLFQKLLITQYTGATIIGGDFN
VTINPALDRNIPTLRNKNSHRVLTTNMTAHNLSDPLRFNNPGLKVFTRIQNNPYAASRIDYFLVSKLVLSKLRAASIVPG
VKSDHCVATFEVMLDPNPRGRGTWKLNSTVLSDVRYIKMIKAEIKEFCTFNPPQQFKPTLSWDALKCHLRGVTIKFCAEK
TRALKAEQKEIENKIKKTESEITSIINPSLKLLQQREAQKNMLNTLVEKRTMGAIVRSRALWTEKGERSTKYFLNLERIR
REKNTIFRLKSDNREITNQSAIIAELANFYQELYEPNRTNWNTEQIAAHLASLSPPRLTPEQSMVLETEVTEKECLFAIN
SMRNNKSPGNDGLPIEFYKAFWPTLKPVFMQAVQFSEKTGILSTTQTQGVITLVQKKDKDPHYATNYRPITLLNSDYKII
SKVINNRMKCFLDDLIHKDQNGFINGRYIGDNIRLMFNMIEYCDLKQIPGAIISVDMYKAFDTISWEYIIETLKAFGFGS
RIIKWIRTVYDAPKCAVTNNGYVSKYFDIRRGVRQGDPLSPTLFVMAIEMLAIELRASPFQGININSHETKLSLLADDTV
IYTRGNLQDFNLIFQILRRFGHASGSVTNLNKSNAFYVGTKRNCTMRPMGNEGLAWPNDQITYLGVVIPLEMQSKRIFTL
NSATIIKKVDIRLNIWSSRALTLLGKITVIKSLIIPILTYKLTVLPEIPPQTFINKLKQKLFRFIWKSKWEKINRTKMCT
DIERGGAGMIDIETYLLTLNLRWIRNVLDPNYHASWKLIEKEFVDQNIMTVAMLSPMRDGCADFRRIFPLRALHKSVILL
RRLFKKGIISDYRTDPRLLWLNPKIKTKQQSFLIEQFLTHGISSYHDLINEKGEYMGYNEIIKKWKVPYKETDFWSYNRL
IKAIPDEWDREESPPANQTEYREYPEKLLKTVMDCHNTKHLYKTLVNISCEQTNKQGQTWATLLGIDPDWKKIYKTNYFC
TLKTKFRSFQIKVNNLAIITNDKLFKFGIVDSGQCVFCESALETVHHIFCTCPKVILFWKEVSDWICATLRTPFVFQDEH
FLFGVSDNPIVSCLLLCARFCVYRSKVAKNKTEIAHVLK
>L1MA6_pol#LINE/L1 2812-6636  [Eutheria]
MAVVSPYLSILTLNVNGLNSPIKRHRVAEWIKKQDPTICCLQETHFTYKDTHRLKVKGWKKIFHANGNQKRAGVAILISD
KIDFKSKTVKRDKEGHYIMIKGSIQQEDITIVNIYAPNTGAPKYIKQILIDLKGEIDCNTIIVGDFNTPLSAMDRSSRQK
INKETSDLNCTLDQMDLTDIYRTFHPTAAEYTFFSTAHGTFSRIDHMLGHKTSLNKFKKIEIISSIFSDHNGIKLEINNR
RNFGNXTNTWKLNNMLLNNQWVNEEIKKEIKKFLETNENGNTTYQNLWDTAKAVLRGKFIAINAYIKKVERSQINNLTLH
LKELEKQEQTKPKISRRKEIIKIRAEINEIETKKTIQKINETKSWFFEKINKIDKPLARLRKKREKTQINKIRDEKGDIT
TDTTEIQRIIRDYYEQLYANKLENLEEMDKFLDTYNLPRLNHEEIENLNRPIMSNEIESVIKSLPSKKSPGPDGFTAEFY
QTFKEELIPILLKLFQKIEEEGILPNSFYEASITLIPKPDKDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHH
DQVGFIPGMQGWFNIRKSINVIHHINRMKDKNHMIISIDAEKAFDKIQHPFMIKTLNKLGIEGTYLNTIKAIYDKPTANI
ILNGEKLKAFPLRSGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQIGKEEVKLSLFADDMILYIENPKDSTKKLLEL
INEFSKVAGYKINIQKSVAFLYANSELSEKEIKKTIPFTIATKKIKYLGINLTKEVKDLYXENYKTLMKEIEEDTNKWKD
IPCSWIGRINIVKMSILPKAIYRFNAIPIKIPMTFFTEIEKTILKFVWNHKRPRIAKAILSKKNKAGGITLPDFKIYYKA
IVTKTAWYWHKNRHIDQWNRIESPEINPRIYSQLIFDKGAKNTQWGKDSLFNKWCWENWISTCRRMKLDPYLSPYTKINS
KWIKDLNVRPETMKLLEENIGEMLHDIGLGKDFLDKTSKAQATKAKIDKWDYIKLKSFCTAKETINRVKRQPTEWEKIFA
NYASDKGLISRIYKELKQLNSKKTNNPIXKWAKDLNRHFSKEDIQMANRYMKKCSTSLIIREMQIKTTMRYHLTPVRMAI
IKKTKDNKCWRGCGEKGTLTHCWWECKLVQPLWKTVWRFLKKLKIELPYDPAIPLLGIYPKEMKSVCRRDICTPMFIAAL
FTIAKIWNQPKCPSTDEWIKKMWYIYTMEYYSAIKKNEILSFATTWMNLEDIMLSEISQAQKDKYRMISLICGI
>L1MEj_gag#LINE/L1  510-1385 [Mammalia]
VSRQRKITTHLRGPSSQREEDQXEQXEHTPSEIELLEETDDNLNEKIIRALKEIQVQHKKDFLELKNMISXLKNSVDELK
ERMVTVETRISGLEDQVEEISQSTEQKYKEMEIMREKIRDLEDRSRRPNMRIIGVPEGEKGTDGGEAIIKQIIEENFPEL
KKDLSLQIERAHRVPGRIDEKRHTPRHILVKFLNSKDKEKILQASRQKEQVTYKGKRIRLASDFSSATLEARRRWNNIYR
LLREKDCNPRILYPAKISFTCQGERKIFADMQGFREYITHVPHLRKILEKRL
>L1MB8_pol#LINE/L1 2346-6164  [Eutheria]
MADVNPTXSVITLNVNGLNTPIKRQRLAEWIKKHDPTICCLQETHFRFKDTNRLKVKGWKXIYHANSNQKRAGVAILISD
KIDFKTKIVTRDKEGHFIMIKGSIHQEDITIINIYAPNNRAPKYMKQKLTELKGEIDNSTIIVGDFNTPLSIMDRTTRQK
INKEIEDLNNTINQLDLTDIYRTLHPTTAEYTFFSSAHGTFSRIDHMLGHKTSLNKFKRTEIIQSMFSDHNGMKLEINNR
RKFGKFTNMWKLNNTLLNNQWVKEEITREIRKYFEMNENENTTYQNLWDAAKAVLRGKFIAVNAYIKKEERSQINNLTFH
LKKLEKEEQTKPKASRRKEIIKIRAEINEIENRKTIEKINETKSWFFEKINKIDKPLARLTKKKREKTQITKIRNERGDI
TTDLTEIKRIIREYYEQLYANKLDNLDEMDKFLERHKLPKLTQEEIENLNRPITSKEIELVIKKLPTKKSPGPDGFTGEF
YQTFKEELXPILHKLFQKIEEEGTLPNSFYEASITLIPKPDKDITRKENYRPISLMNIDAKILNKILANRIQQHIKRIIH
HDQVGFIPGMQGWFNIRKSINVIHHINRIKDKNHMIISIDAEKAFDKIQHXFMIKTLNKLGIEGNFLNLIKGIYEKPTAN
IVLNGERLXAFPLRSGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKXIQIGKEEVKLSLFADDMILYIENPKESTKKLLE
LINEFSKVAGYKINIQKSIVFLYTXNEQSENEIKKTIPFTIASKRIKYLGINLTKEVQXLYTENXKTLLKEIKEDLNKWK
DIPCSWIGRLNIVKMAILPKLIYRFNAIPIKIPAAFFAEIDKLILKFIWKCKGPRIAKTILKKKNKVGGLTLPNFKTYYK
ATVIKTVWYWHKDRHIDQWNRIESPEINPYIYGQLIFDKGAKTIQWGKNSLFNKWCWDNWIXTCKRMKLDPYLTPYTKIN
SKWIXDLNVRAKTIKLLEENIGVNLRDLGLGNGFLDMTPKAQATKEKIDKLDFIKIKNFCASKDTIKKVKRQPTEWEKIF
ANHISDKGLVSRIYKELLQLNNKKTNNPIXKWAKDLNRHFSKEDIQMANKHMKRCSTSLVIREMQIKTTMRYHFTPTRMA
VIKKXDNNKCWRGCGEIGALIHCWWECKMVQPLWKTVWQFLKKLNIELPYDPAIPLLGIYPREMKTXVHTKTCTRMFIAA
LFIIAKKWKQPKCPSTDEWINKMWHIHTMEYYSAIKRNEVLIHATTWMNLENITLSERSQSQKTTYCMIPFI
>L1_Loris_pol#LINE/L1 gi|126296|sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog [Nycticebus coucang]
TGLSKGLSIFSINVNGLNCPLKRHRLADWIQKLKPDICCIQESHLTLKDKYRLKVKGWSSIFQANGKQKKAGIAILFADA
IGFKPTKIRKDKDGHFIFVKGNTQYDEISIINIYAPNHNAPQFIRETLTDMSNLISSTSIVVGDFNTPLAVLDRSSKKKL
SKEILDLNSTIQHLDLTDIYRTFHPNKTEYTFFSSAHGTYSKIDHILGHKSNLSKFKKIEIIPCIFSDHHGIKVELNNNR
NLHTHTKTWKLNNLMLKDTWVIDEIKKEITKFLEQNNNQDTNYQNLWDTAKAVLRGKFIALQAFLKKTEREEVNNLMGHL
KQLEKEEHSNPKPSRRKEITKIRAELNEIENKRIIQQINKSKSWFFEKINKIDKPLANLTRKKRVKSLISSIRNGNDEIT
TDPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFY
QTFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHH
DQVGFIPGSQGWFNIRKSINVIQHINKLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANI
ILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIREEKAIKGIHIGSEEIKLSLFADDMIVYLENTRDSTTKLLEV
IKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKN
IPCSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIWNQKKPQIAKTLLSNKNKAGGITLPDLRLYYKS
IVIKTAWYWHKNREVDVWNRIENQEMDPATYHYLIFDKPIKNIQWGKDSLFNKWCWVNWLAICRRLKLDPHLSPLTKIDS
HWIKDLNLRHETIKILEESAGKTLEGISLGEYFMRRTPQAIEAVSKIHYWDLIKLKSFCTAKNIVSKASRQPSEWEKIFA
GYTSDKGLITRIHRELKHINKKRTRDPISGWARDLKRNFSKEDRHTIYKHMKKSSSSLIIREMQIKTTLRYHLTPVRVAH
ITKSPNQRCWRGCGGKGTLLHCWWECPLIRSFWKDVWRILRDLKIDLPFDPIIPLLGLYPEDQKSQYNKDICTRMFIAAQ
FIIAKSWKKPKCPSTHEWTSKLWYMYTMEYYAALKKDGDFTSFMFTWMELEHILLSKVSQ
>L1_Ele12_pol#LINE/L1 1194-4361  [Aedes aegypti]
MAFNSYNIASININTITNTTKINALRTFLRMLEIDIAFLQEVENEQLLLPGYHVVCNVDHTRRGTAIALKEHVNFSNVEK
SLDGRLIALRVQNTTLCNVYAPSGTAFRAERERFYHNTLAYYLRHSSEHILLAGDFNCVLRQCDATGHNPSPALHTTVQQ
LKLLDVWEKLRPSLPGYTYITHNSSSRLDRMYVSQSLRSHLRSTDIHVCSFSDHKALTARICLPYLGREPGRGFWSLRPH
LLTAENVQEFQLRWQYWTRQRRNFGSWMQWWMSVAKPKIQSFFRWKSKTAFNDFHREHQRLYSNLRQAYDNYHQNPAVLP
SINRIKAQMLTLQRNFTQTFVRINESYVAGEPLSTFQLGERRRRKTVITQLRDENNNPIDGSEAVERHMLEFYRALYATG
EATEVMDEFACPRVIPENDPTSESCLSEITPADIYAAIKTSSPNKSPGGDSIPREFYLKTFDVIWRELTLVMNEALAGNF
PADFVDGVIVLVKKKGNDQTAHSYRPISLLNCDYKIFSRILKQRLENVMRTHRLISSGQKCSNSGRNIFQATLSLKDRIA
KLKHTKQRGLLASFDLRHAFDLVDRAFLARNMCSLGFNPAFVRLLTKIGELSSSRLLVNGYLSESFPIQRSVRQGDPISM
HLFVIYIQPLIKRLEEIGGPDLVVAYADDISVISTSKVRLERMRETFHRFERVSGAKLSLTKSSSISVGYTDDMPLTVPW
LKNEYSVRILGVTFVNSIRLMNKLNWDEIVGKFTRLVYLHIPRTLTLHQKIILLNTFITSKVWYIASVLSPSAAHKAKIT
ATMGNFLWRGIQARVPMHQLARCREAGGLKLHLPAMKCRALLLNRHVRDIDSLPFYKSFLNQNNPNPPSDCPCLKLILND
FPLLPPLVQENPSANGIHSVYLEETDEPKISREHPEANWRKIWANISVRQLNSAQRSLLYLLINAKLEHRRLWFRMNRTD
GENCLHCNCALETLEHKLSECVRVEAAWRLLQRNITTLLNGWRILTIDDLLRPQLDGVAKWKRTRILKMFQQYVFFIMEC
NDAIDLVALEIEIQHA
>L1_Ele9_gag#LINE/L1 162-1331  [Aedes aegypti]
MNNRKIRENTFRVEFAKLPKKPTSEEVHKMVGLQLGITRSQLVCIQLSHTDECAFVKVTEQAIAQRVVDQYDNKLDYDVK
GVKYKLRLRMADGCVDVRLHDLSENTTNEQIRRHMEVYGDVLSVQELLWSDKHHFPGLSSGIRLVRMVLREPIKSYITID
GESTLVTYPRQRQTCRHCGEYLHTGISCVQNKKLLAQKAGLNDRLKKASYAGAVRGNPAEAASTHQGNDTALISAQATNT
STQAPSVQEASGESVGLRTDVEIETDNTNNAAGESADDPSNRSNQAPDIGNIAQASTVPDEHGTDTASEYGSVEGSGPSH
QSVPAQQPEPEAGPSSPGRVMQALLSITSNENEAQKGKHKQEDGSTSEDSSAFTVIGKQRGRGRSKKLKQ
>L1_Ele26_pol#LINE/L1 1458-4658  [Aedes aegypti]
MNNPSISYNIGSVNICAMSSVTKIQSMCSFFRLMDFDIVLLQEVENSRLSIPGYTVITNVDERKRGTAVALKAHIPYCNV
QRSLDGRIICVNVGNCVTVCNVYPPSGTQNTSSREHFFRQSLPFYLQQSTPNLILGGDFNCVVSAKDATGSSNHSQSLKQ
LLDSLKLCDTWDCVHKNQIAYSFVRPNCASRIDRIYVSSSLVSSLRTSEYFVTPFSDHKAYKMRCCLPNLGKPQGRGFWS
MRTHVLTPENLEEFEIKWNRWLRERRNFDSWMSWWLNFVKPKIISFFKWKTNLAFREFHVRNEYLYRRLREAYDNLYANP
QGLTEVNSIKGKMLNLQSKFSKSFERINETIIAGEKISAFQLGERIQKKNKSTIRSMTHANIRLENPTEIERHVCQYFEA
LYTDENLSVNTEFPCNRFISPNCEFNIGAMNEITTQEIFFAIKSSASRKSPGCDGLPKEFFLKTFDIIHRQLNLVINEAL
RGNIQQKFVDGIIVLSKKKGGDDSIKGYRPISLLNFDYKLLSRILKQRMDKIMTDNNLLNSNQKCSNSKRNIFEAVCAIK
DRIVEINCKRRSGRLISFDLDHAFDRVNVNFLLNVMRSMRFHTDFVSLVGKIMSMSHSRILVNGNLSPEIPILRSVRQGD
PISMHLFVLYLHPLLEKLTTICNHPLELVVAYADDISIIVVEELKLDLIKKAFMDFGMCSGAKLNLTKTTSIHIGAQQPT
NRMVSWLKSEEAIKILGVVYFNSLKRTLDFNWAEVIKKTSRLMWLFKQRVLSMHQKVALINTFITSRLWFMASVLSIPNS
AVAKITSRIGGFIWSRYPCRISMEQLSLPVEKGGLNLHLPMHKCKALLLNRFLQCGEHTPFAASFLEQMANPPNVSGIPA
LYPCLKQISKELPYLPESTIRNPSAPAIHSIFRNMIKSPKIVEENPNIHWARVWKNIRRKTFTSEEKSTYYLVINEKIPH
AALFFRQNRIDSPMCNRCPNAVEDLEHKLSTCVRVQHLWNHLRLKLETILNRRVTYKMLSLPELNNTEVNTRNKALKMFI
VYVNFVLDVNSCFTIEALDFVLCCNCL
>L1_Fc_gag#LINE/L1 934-1824 [Felis]
MTKRKNSPQKNLQEIATANELIKNDLNNITESEFRIIVIKLIAGLENSIXDSRESIATEIKGLRNSQEELKNAINEXQNK
METTTARIEEAEERIGELEDKIMEKEEAEKKRDKKIQEYEGKIRELSDALKRNNIRIIGIPEEEERGKGAEGVLEEIIAE
NFPDLGKEKGIEIQEAQRTPFRRNLNRSSARHIIVKLAKYKDKEKILKAARDKRALTYKGRPIRLVTDLSTETWQARKEW
QEIFNVMNRKNMQPRXLYPAGLSFRIEGEIKVFPNKQKLKEFITTKPALQEILRGIL
>L1_Ele28_pol#LINE/L1 1499-4690  [Aedes aegypti]
MSVLNTFKSYNIASININAISNENKVNSLRSMIRLLDLDIVLLQEVENSRLSFPGFQVYSNVNETRRGTAIALKMHIPVS
NVQRSLDSRIISVKINNSVTICNVYAPSGVQNYHSREDMFNQFVPYYLQSASEYVVFGGDFNCVTANKDATGVNNKSAAL
RTLIQNMNMRDTWDCLSREIEFSFIRSNCKSRLDRIYVSANLVEQLRSASFHVNCFSDHKVYRIRLCLPDLGRAAGNGYW
AMRAHVLTEENVEVFENKWNYWCRQRRNYNSWIEWWIDYAKPRIKGFFKKKTNDSFREFHAKNEFLYARSKTAYEELYQH
PNKMSEVNRLKGKMLLLQREFSKKFVRINDQCLEEESMSSYQLGDRIKKKSSSHITSIVDQQRQINGSAAVEEHVYQYFR
DLYSASETQEYQDATTTTKIPENSQENLRIMDEVTTEEIFRAIKSSASKKSPGVDGLPKEFFVAAFNVIHRQLNLIVNEA
MQGNIPQKFVEGVVVLCKKKGGENSIKGYRPLTMLNYDYKLVSRILKSRVASVIDKNNLLTHSQKCSNAKKNIFEALHAI
KDRIAEIRHKKKRARVVSLDLDHAFDRVEHCFLFRVMRDMGFHERLIELLRKIMQNSRSRVLVNGHLSPEFQIGRSVRQG
DPISMYLFVIYLHPLLEKLHMICNDPLELVVAYADDITVVIVDDSKLEQIKRTFHEFGQYSGAVLSLSKTIALNIGDLSR
PQSVVNWPSVSDSVKILGITFFNDHKVMIEFNWKETIRKMTQLMWMFKPRLIVLHQKIRLLNVYVTSKLWFVASVLSIRN
QDVAKVTKHIGTFIWGRKPRVAMNQLIQPVSKGGLNLHLPMYKCKALLANRTLQVREVIPFGNRLITEATNGNNPVFPDM
YPCIKVVWRVVQDLPQQVMENICSSAIERHLTQELPIPKIISENPAVRWPSVFQNIHSKHMSAIEKTTMYLFVNQKLPHA
QLLYKIGQTTSPNCATCRLTVESQEHKLANCPKVARLWSYLCSKLRLHLNTRIEYSIMKTPEFRDVSRNSRIAVLKLFVK
YVVYILEGSIPLNVQELEHILNLN
>6598399_Ath_pol#LINE/L1 gi|6598399|gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase  [Arabidopsis thaliana]
MKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPEGRSGGLAIFWKSHLEIEFLYADKNLMDLQVSSRNKVWFIS
CVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWG
GNRNDQWVQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQFRYDKRLDDDPYCIEVIHRSWNS
AMSQGTHSSFFSLIECRRAISVWKHSSDTNAQSRIKRLRKDLDAEKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQ
KWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNH
NLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMS
DLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYD
RVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAG
KITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGIS
LEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVM
MDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGS
RPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFP
WKDVEIILKQRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKA
LHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPH
HLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLKITKWCPPLPGELKCNIGFAWSK
QHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWALESMTHHHFDRVIFASSTHEIIQALHKPHEWPLLLGD
ISELLSFTKDKPHWFLCMEPFCCNRGANAIATSVITGCRFQSYVARGYPSWMTNVFTAERGNLI
>I_Ele7_pol#LINE/I 1569-5249  [Aedes aegypti]
MANTTNRVNSQFSPKPQSQTCLALQWNLRGIKFRIPELQLLISKFDPICLSLQETMMPESKTPPNFIKGYTLYIRENPDN
PSKTGTAIAIKSDIPHRKIDVSSSVLAIGIEIDYPCKVTLLSLYIPGHLSNQTIKTDISKLLNQFSSPVLLMGDFNGHST
LWGCSNNNSRGVMLGQLFDEFGLTLLNDGTHTRICPSTGNSSALDLSLCSHSLGSQLSWMVHDDCCCSDHLPIVISLNRA
PPVSTCRPRWKYEQADWVNYQNEVFHAFTVDPPNSADDFVKQLFQIASNHIPRSSGAPGRKSVPWWNSDVHSAVKLRRKK
LRALQRLPKEDRKNSEIFAEFKAARNAARATVKSAKQDSWDQFISSINPESSSKELWDKIHRLSGKKARQSIKLRINNQI
TEDPSTITNHLADHFAQSSSSSNYSDRFISRKSSIESAPLNLESDDSQEYNRNFSFDELQWALHKVHGSSAGPDDVGYPL
IKNLPLIGKTILLTIFNNIWNQGEIPDSWKEGLVVPIPKPGKDKNSADSFRPITLLNCIGKILEKMVNRRLITLLESQGL
IDDRQFAFRPDKSTDDYLTELEDIIDSHLERGMHGDIVSLDLSKAYDRAWRFPILKSLEEWNIKGRMGRYVQNFLKDRRF
RVILGNNRSELRCQENGIPQGSVIAPTLFLISIQSLFKTIPPNVFILVYADDITIITFHSMKSLARKRIQSAVNTIAKWA
DENGFTVSPEKSQLLHISQNRKKMSKLPDITLNNSIIKSQISLKILGIHLDRSLSFIHHLNSVRKQICNRTNLIKVLGSR
IPCAHRKTINQIINSWLLPKMFYGVGLFSRGGDLVNKRLSPLYNKAFRYASGAFCTSPTSAIMAETGQLPFEYHLTTCLV
AKATRWLSLGGRYNVPLVKRTTEKFQSLTNQVFPTIATLPRSKNRPWNQPLLKIDLSLLSQVKAGDPSSIIQPHFHKLIA
DKYSTFQHLYTDGSVSNGKVGYGITGSPNVSNISSALPSIYSIFSAEAYALMKAVHLISPQNLQSTVIFSDSASCLQEMN
SYSLKHPWLQEAQGLALTNGATFCWVPGHSGIHGNEEADRLAGEGRGVNPEDVSVPSIDVLRWTKERILESWNTKWHHSR
DISLRIIKPSIFPWPDNSNPKHRKIFTRLRIGHTRLTHEYRLDKVDPPICTSCNSPLTVRHILIDCLTYNNERLAYNLGG
TLDEVLSTTKETDLLGFLTATGLLDQL
>I-5_DR_pol#LINE/I 864-4604 [Danio rerio]
MPTILQWNARSLLANGQEFKKFIEDLSNKPEIICIQETWLKIHLDFRITGYIDVRHDRKEEIGGGCVTFIKENLSFREVE
KGKDQEYIVIAVWIKGVELIVINYYNPCKKMDISKLRQIKEINNRNVIICGDFNAHSTLWGGEKLDENGEILEELLEEMN
LVCINDGSGTRLDLYRGKLSALDLTIVSKNLGDICNWEVWEESTLGSDHFPVISKLAWKGEEEQRGRIEKWIFSKAQWDK
FMYLCSVRSEEIDLNDEIEEIDRKIREVITTVAEQTIPKNKSKMKKRAVPWWTDGCNKAVRERNKMFKILRKTHNIQNLI
KYKKAQALVKKTIKEAKKQSWRDYCSKIGRTVPIGEVWGMIKSMRGIKKQWQYPVLKAGEELASTEEGKAEMIAREIVKV
YSSNNLTEKGLRSRERTKAKYPGISDKKEKTDSSMDAPFTLGELKRALETFQATAPGKDNICYEMVKHLDVLAMGKLLGL
YNKVWEEGKIPMSWKEAIIIPIRKPGKDATNPSNYRPIALTSHIGKIMERMITERLNHYVEGRGFISMYQSGFRRGRSTM
DPIVYLETEIRKAQVNKEVVLAVFIDIEKAYDMVWKEGVLIKLNKLGITGRIFNWIKDFLFGRIIQVRIGKVLSKRYVVE
NGTPQGSVISPILFTIMINDIFSNIQSDIGRSLFADDGALWKRGRNVKHVKQKIQEAVKLVEEWSYSWGFKLSVEKTKTV
LFTRKKICDIEINMYGQKLEQVKSFKFLGMWLDTKLTWNEHINQLVNKCKKVLNIMRCLSGTEWGASRNALRNIYVALVR
SVLDYGCFIYGRASKSNLQKIEVIQAQALRICCGAYKTTPISALHVEMGEIPLELRRKQIMMNYWINLQGQEINSNPAKR
VLIPRWEYEKNKTLFFGRDSMEVAKEMELIDKGFNKTVPIATTPPWLYPLGLVDLELLSNSQDYRNIANMSGIIEDKIMT
KYKEYTEVYTDGSVNLDLGRTGFGVFVPKLDISIKKRTTNYLTIYTVELMAIIAALYWIEESGLKKVVICSDSYSALSSI
KSMTSKNRQDCIYEIYEILFRLQRANIRIVFMWIPAHIGIKGNETADFLAKEACKLDEIMNILLSKTEAKVIVKKDILKQ
WQYNWDRDITGRHYYRLQEKVGNWRKGKGNNKIEGIITRLKMGHTGLNKTLHLIGKHPTGLCDNCQEEESVEHVLCYCKK
FIIEREILKKEIIKQNFSEISVKIILGNDNNESLVKYLRKTGLINRI
>I_Ele10_pol#LINE/I 2285-6625  [Aedes aegypti]
MTPQPTNEDNCLDSTSSSRGAVGPEAKPLPEPSGRLLHSNSKLDEENLKKNSASSSRGAGRPKARTQSEQPGRLRHSTDE
DPAIAPGSWGTDNADVLPTPVLADNPQRRGEAEGGTDKGENTYSPQDVEGIKTVMPLDLGTHKGGNPCPPKDSVGVKNHQ
PTLPEHSTSTDEINTFFPTVGTSLPLVGGRTPPATGLALSCSAHSSSPPASSTQTSEANRFCTQSNVSSSFTGNTNFPTP
SLPRPTNFILQWNINGFLNNLGDLELLTQTSPPWCLALQEVNKVTAEQLNRTLRGQYEWTIKKGNNFRHSVAIGVLRTIP
FEFLHLRSDVPAVGVRLQNPLNISVINVYFPCGALPNLHEQVKSLLEAAPGPVICLGDMNAHHPAWGGNRADRRGTTLLD
LFEELDLVVLNDGSDTFYNGHYSSAIDVTAVSRSTLPKLQWHTITDLHGSDHHPIQITIAASSPITTRRPRWLYERADWE
IYNASVREALRAADPTSIPDFNELIHKAAEAAVPRSSNKPGRKALRWWTDDTRKAVKARRKALRAAKRLPQGHPEKENML
NRYRMLHIQCRQTIRNAKRTSWEEFLEGMNASQTSAELWNRVNALSGKRNLAPLSIQLPDKLVTDPVAVADTLGQYFSSL
SAIDSYDDLFKRRYNPSTDSVLNFPVPYDLRGAAINEPFSLQELKFALGRSKGKSAGSDGIGYPLLKNLPFPGKIKLLEI
LNQIWLSDTFPAEWQESLVVPIPKANNPTRGPSSFRPIALTSCLSKIMERMVNRRLKQQLEAAGHLDRRQHAFRAGYGTN
SYFASLGDILHNAHSEGLHTELISLDLSKAFNRTWTPLVLKQLVEWGMSGHVIHFIKNFLSNRTFRVLIGDNTSKLFAEE
TGVPQGSVIAVTLFLVAMNGVFRNLPSGIYIFVYADDILLVISGRTPVRTRIKAQAAVNAVVKWTSSVGFTLSAPKSIRC
HICNTGHRITGSPITIQGQPIPLKKTVKTLGIIIDRGLTFKQHFESVKTNCRTRLNLVRTISRPHRSNNRAIRFRVAHAI
IDSRLVYGLELTCIATGRLLQTLAPVYNTYVRIISGQLPCTPADAACTEAGILPFRHVISATICKKAAAFAEKTSGNERI
FLLSEGCRILRTVANVDLPPVAKIHWYGDKSWQSGKPKIDSTIKDRFRAGDNSITLRASVIEWLRNNYPNHLHRYTDGSL
SNRGVGIGIYGLDVSRSLSLAPLCSIFSAEAAAVFIAATTPAEQPILILTDSASVVSALQSESPAHPWLQGILRFAPPDT
TFAWIPGHCGVPGNTAADRLAGAGYASTRYTNKVPLQDIKRWITKSVNAQWATEWSQQSTCHLRKIKQDTQPWTDVISLK
EQRIISRLRTGYTRLSHNMEGLPFHRICTTCNTHNKVEHFLCVCPQYEFHRRNHGLTGSIRENLCNDTTTLNTVICFLKD
SGLYSQI
>I_Ele14_gag#LINE/I 381-1676 via tfasty with Mosqul_Aa2_gag, 2 frameshifts and 2 stopcodons. [Aedes aegypti]
MLANGHPLHPGDPGGPGGGFGKVGNRVLGDYTGALLPEFMDREGTAGQLQYLRMEATAGTMPQDPFLLRLSVEKAIGGPI
FGAFKENKGMSYVLKVRSQDQVNKLLRMSQLQDKTPIRIAEHPRLNQRECVVTNHDTIGLSDDYLLQQLSSQGIKGLRRI
TRRETGMAKAVVNTATIVLTIKGTVIPEHVVFGWSRCKTRLFYPSPMLCFRCWEYGHTGKRCTSPQQHLRTLLRGTPGRT
NPRSYKHPGRSRQCPRCVENAVPVHRRAVAARPVQNRRQHSVSSRKCPVYKKEQAIQHLRVDVDIPYPQARREYEAQQAS
KSKWCQLLPVWSVPARTLKSTVxRPWWLQNSADGEEKRMAEMERALQSRTVSDRLEAVKEHGTIGELVKQVATLTETVQN
LQNALAVRTNKSRIKVAPSLSFxAGNQLPSND
>I_Ele11_gag#LINE/I 1-849 Fragment [Aedes aegypti]
GXIRCRTRPYYPSXMQCFNCWLFGHTKMRCQAEKAACGTCSGDHXIAENRECSNNTFCKTCNXEDHKISSRACPQWQXEN
AIQKVKVDQGIPYPAARRIVEQNRNGRSFXAVVGPATTESNQQINGRADQHASALAAKDAEIAELRXALAIRSAPLAVAN
NEIEQLKSIVAEQAKQIQLLTEQVSVFLKAVMPAASFPNLTEPXKTATXAVLPVSNNTNTASSASSTISDXPINTPSSNP
PSNKDIPGFFTTSSEKSSFTTNTKTAPYQSFPPKRKRNCKRHS
>I-5_CQ_gag#LINE/I 112-1269  [Culex quinquefasciatus]
MTTTEATTRRVRQYPDEATGPFLVIAEATGEDNLRPTNLSKTIIGMYQQDYVRAVVLSRRRMKILMRTGQAANDLVATRT
IKNVQFSIPQRLVEVLGVAHIELEVDEDDLANATTFDKGKMMQLHNPKIVETRRMRKRVDGVDKMLTTVVVTFEGQKLPT
HLIINQVLYPVKEYVYHTRQCRKCWRMGHGEKNCRGKARCKKCAQEITTTIAEHACEVAVPVCINCKGNHEADDTKACPK
AIKRKEDDQKRKEAHSQGKTDWFSTAGLAEETSGSQPVSTLTEETIPAPSTSGAQSKPAKRKCLDDNTDDSSEEEEIPRL
TVHIEEGIRNAIQQAINSDEATLAISGVLGAPPSEIPDDRLEDALKARLFDILAQRTDDYIGTLRL
>I-1_CQ_pol#LINE/I 3-3299  [Culex quinquefasciatus]
GQSNFATELQKLIDQLESPFLILGDFNAHDPLWGSLREDGRGKAIRQAAETNNIIVMNDGSHTYHRGTTNSCIDISLCSQ
SLINTLTWCIHTDTHGSDHNPIEIHACGLSPSTTRRRRWRYEDANWNDYELEIERRLEADREYTISEITQSILKAAEASI
PRTSGKPGRRSVYWWNKEVEDAIKTRRKALRKLKKLSNESPLRDDALNMFRIARNHARKVMEESKKKSWEEFLDGISNQT
SCTEMWRRVNALSGKRRTRGLSMEVGGSLTDNPALIAQEIGQYFQKLSATEGYSSKFQRLKSTAEENPVSFQIDASNENE
DYNKCFSMDELLRALDNAHSKSSGPDDVGYPMLKHLPYLAKKSLLNAINKLWLSGSFPEEWRKSIVIPIPKKGQNASSPT
GYRPISLTSCIAKVAERMVNRRLTTVLEENNLLIDQQHAFRKGRGSGTYFARLGDILDDARTQGHHIDLAALDISKAYNQ
TXRTGVLRQLQDWGFNGSLAMFLKXXLSDRTFQVAIGNTLSDLFVEENGVPQGSVLAVTAFLIGMNNVSLDLPKNTHILL
FADDILLITHGPTFARNRIKMQAAVRAVGKWADSVGFKIASEKCAILHSCSTRHHHWKRPIVLNGVNFPNREKIKILGVT
LDRNLNYNQHFREVKESCRSRIQLIRTISSRHKTSNRKTIIQVGNSIITSKLVYGIELTCAAFSALVNTLTPVYNEIVRR
ASGHLKSSPILSIMIESGNLPFPLKAALILAKRTTSVMEKIPEESSTLLRKTNEILREKIGSSLPEVAKLPRVQERRWDD
VKPKIDWKIHHKIKPTDTAAQKRAVFKQRVEQKYQRHQHIYTDGSVSRHGVGMGAYSVHWSISKKIDNKCSIFTAETAAL
IIAVDMTQEDRIYETVIFTDSASALLNVESGKSKNALIQTLESKLENRTDITFCWVPSHCGILGNEKADKLAGEGYRAEA
WITPLPKQDVNRWINTQLELVWENQWHITRDVFTRKIKGTTKSWDDRGHRTEQRIMSRLRIGHTRLTHRHLMGLGPREMC
FTCGVPITVEHILVDCPSYTAQRQENLLSNSIREILGHEPESEQRLLKFLRETHLYETI
>AARA8_AG_pol#LINE/I 926-4185 via tfasty with Mosqul_Aa2_pol, 7 frameshifts and 4 stopcodons. [Anopheles gambiae]
MNQNIEELKLLINRHDPTIITLQEVHAVPSLLSSPLNRYNWYTNIHPTIPHHSVAVGILKHISSRSSCRNFSPVPMLHSM
FNLSHSINPFTIISIHxYFQQINNNLIVLGDFNAQHTTWGARPPCNRGNSIACVFETIGLEVISNQSAHVFLPxTAKAPY
LTTALCHPSMAQQFTVTVSNDTLGSDHFPLLIHSSLNPQRPLLRPRWKYEEANWAAYQREIDVQSSTxxKSPSSRFTACI
EYAASRSIPRTTGKPGKRCEPWWNATVAAAIKARRAALRKFRRASKNPDNFFTPIFAEEYRTANRLAKEAVRLAKKNNWD
NFINEINPQLSSKEVWRRVGCLNGKNQQSSTIVLKTQDTIIAPAEVPEAFAIHFSDVSATHNYPSNFQTHKLNTESVPIS
FPDATEHRYNSLFTITELHWALRKCKGRSAGPDNIGYPLLQNLSVESKSTLLNIYNSIWSSGNIPNDWKSSLTIPIPKPN
KPNNNVDSYRPISLLSCMGKVLERMVNRRLSQELEDRNLLSSDQHAFRSGLGTETYFAKLDDTIQKSIDQDHHIDFAIID
ISKAFDRTWRHSILSQLAFWGFGGRLTNFIDNFFTDRSFRVLIGNSVSNPYPLENGVPQGAILSPTLFLISIESLFCSIP
YEIKPFVYADDIILVSSSRSVSTSRQLLQKGVDKIRQWSRWTGHEISHSKSQILHICKMGFHRKLPIKLHDHIIPNVNSA
KILGVTFDTKLTFIPHSNRIRKEAKTRLNLFRMLGAGQHRASRQTLLQILNSWLLPKILYGIEIVSRQRENFEKRIAPTY
HTAIRLSTGAFCTSPIHSLLCESGLLPFDYIITNRLTAAAGRILEKDIKAESFINRVNAQFHTLTNNQLPHISKLTGRGG
RPWYRQPPTIDWSLKDKLRAGNCSHIAGHHFTSLIQSKYQNHHHIFTDGSVLNESAGFGIFSSNNSCAIKLPDHTSIFSA
EAIAMIVAAQEGICLNKPNIIFTDSASVLAALEHGNIRDPHIQLLDQLDNSPVITFCWIPGHSGISGNEKADQLANQGRL
RPPENNTTIARRDFNKWSKTIVDEKWNLTWHRKQNSFFEPSNHHNSLER
>I-1_NVi_gag#LINE/I 273-1874 [Nasonia vitripennis]
MTDESDGEDHIMQTSPIKTFPEERTKKVDDLRKRKTTEQSQYKPEERNSTKRAHITQQDNNKDKTSQETNAQQHGNDQTD
VLLYTEDIPPPYKIIIVPTTETKTSENTSESSTKSIRLEPIHIAKTIIPILPNNSIDEIKKSGKNRVTVITHNRKVANKI
LTLEILKEKKLTPFIPSSYIYRRGVIKHVPTDITENEIKNNIKLTSPVANLTIQSVKRFYRYNKSESGTTSTPTTTIMIT
FKGQVMPQYADLYRIKHSVEAYIPTVKLCANCYRHGHTKAFCKSKTRCIYCGETDHDSTLCTMKNETLKCINCTENHLPT
DRNCKIRIREQQIITMATKRNISVQEAKQNYNELILNKKRIRFSEFPELSIATTPDELDYASQIYNTPRRRLFTDTLKTS
RPVNSRPLTNNSPKKLHNNVINKENNQLTYQHKNILISPNGDYKLNYTATKQNQGNSPNNNNYLTTTPNLSTLASPLLTL
NEKGFLLDKKISLTQNDIVNYLNNDPNFYENILNILQENSYQNSQNTYIENNSL
>I-4_CQ_pol#LINE/I 1668-5354  [Culex quinquefasciatus]
MDNSTSKMNEEISVLQWNCRSIVPKLDSLKILAHETKCEVFALCETWLPPNDDGLNFPNFNIITKNRDDSYGGVLLGIRH
GLTFQRLNLPSQPGIEVVAIQVQIKNKCFSIASVYIPPKTSVNRQQLKNIVEMMPEPRLILGDFNSHGTGWGELYDDNRA
NLIYDLCDEFNLTIKNSGEITRIARPPARESRLDLSICSRTLSIDCTWNVIQDPHGSDHLPILISIATGNQPVEPVSYTY
DLTKNIDWKRYALIITEAIESIDPLTPQEEYTFLANLIHSSAIQAQTKPIPSASSRMRPPSLWWDKECSEVYSEKSNSFK
IYRRTGQIESYEQYLLLEIKFQNLVKCKKRNYWRTFVDGLSRETSMRTLWTTARRMRNRAPKNASEEYSDRWLHNFARKV
CPDSTIPKQKRYSNDLVFPELSSAFSMIEFSVALLSCNNTASGMDGIKFNLLKNLPSVAKCRLLNLFNIFLEQNIVPEVW
RQVRVIAIQKPGKPATDHHSYRPICMLSCVRKLLEKMILFRLDKWMESNGLLSDTQFGFRRGKGTQDCLALLSTEIQLAF
AKKEQMASIFLDVKGAFDSVCIEVLADKLHKSGLPPLLNNFLYNLLSEKHMNFIHGNVTITRSSFMGLPQGSCLSPLLYN
FYVNAIDSCLDNGCTIRQLADDCVVSVTGQSANHLSEPLQNTLNNLSRWAMELGIEFSTEKTEMVVFSRKHNPPSLKLYL
LGKLIIQSLVFKYLGIWFDSKGTWACQIRYLKQKCQQRINFLRTITGTWWGAHPTDLIRLYQTTIRSVLEYGCFCFQSAA
KIHMIKLERIQYRCLRIALGCMHSTHTLSLEVLAGVLPLKTRLYQLAHRTLIRCEIRNPLVIQNFDLLLDKNPQTRFMTI
YHNHITKEISPSNFTPNRSTISSTHNPSVLFDLSMQQEIKMIPASQLSQLVPHIFLSKYNHIKAENMFYTDGSLIEGSTG
FGVFNTKVSAFHKLQNPATVYVAEQAAIHYALGIINLQPQDHYYIFSDSLSTIEALRSLKSPNSSSFFFHKIKEIMSLLV
EKKYKITLVWIPSHCSVLGNEKADSLAKQGALEGSTYDRIITYDEYFTIPRQESLVSWQTKWDKSEMGRWLYSIRPKVST
TSWFKHMNVERDFIRVISRLMSNHYLLNAHLYRINLKDDNLCGCGEGYHDIEHIVWNCPENLHARSQLLDSLRAQGRQSD
FPVRDILASQDVPYLLCLYRFLKSIKVHL
>I-3B_CQ_pol#LINE/I 2260-5958  [Culex quinquefasciatus]
MGNTPKTKNGISFLQWNCRSLTPKLNDFQQFAFERDCDVFALSETFLIGDETPAFRGYNIITESRAGPNRGGGVLIGVRK
CHTFRKVTLPKLGGIEAVAVQARIRGLDICIVSVYVPPQVSLTRQKLWGMLELLQAPRLVLGDFNLHSTEWGSHKTDPQA
YLIHELCDDFQMTLLNRDKQVTRIATPPTPTTSGTKASAIDLSLCSNSLAVLCDWNVLQDPRGSDHLPIAILVSHGPQQS
TTVEMPYDLTRNIDWKQYAEAVSIGVELRXGLAPLEEYAFLANLIYDSAXQAQTKPVPGPYIRTRPPLPWWDKECTDLSA
ARSEAYVDFCKCGIRANFQKYRALDRRYSNTLKRKKRMYWREFVEGLPADTSMSTLWRVARAMRRGSVPNESVEKSDKWI
LDFAKKVCPDSVPTQPSFDVVDGSDXNPPFSMVELSIALLTGNNTAPGPDKIKFSLLKNLPDVAKQRLLNLFNTFVEQNV
IPHEWRQVRVVAIQKPGKPASDHNSYRPISLLSCLRKLLEKMILDRLEPWMEREHLLSDTQYGFRRGKGTSDCLALLATG
IDIARGKKQQMASVFLDIKGAFDSVSIXVLGVKLRRSGLNPTMCNFLINLLSEKHMHFVQGDLAITRISYMGLAQGSRLS
PSMYNFYVSDIDDCLTGDCTLIQYADDAVVSIAAKKEVDLLEPLQDTLNNLAHWAVGKGIEFSPEKTELVVFTGKHEPPQ
LNLSLSGKTIEQSDHFMYMGTIFDQKGTWGKHINYLKQKCLQRTNFLRSVSGNRWGAHPSDLLRLYKTTILSVLEYGSFC
FQXAAKSRLLVLQRIQYRSLRIVLGCMHSTHNMTLEVLAGVLPLRTRYYELSYRFLIRCDYRNKLVIDNFETLLNLHVES
RRMLLYYDFMSSWEWSPSTTVQRTPPLTSSTLIGFDTSMKADTRGIPNHLLRGVVPSIFASKYNHVPPNNRFFTDGSKLD
GCTGFGVYHESYQLFFKLKDPSSVYVAELAAVYCALRIIETMPPDHYFIFTDSFSSVEAIRSLKPTRESAFFLTEIRKTL
NNLAAQSFSITVVWVRAHCSIPGNEKADLLAKKGAESGDIFERPISLQECYGFPRQRALLDWQNQWDDDTKGRWMYSIRP
KVQRKAWFKGMDLTRGFIRTMSRLMSNHYSSKAHLYRINMSDTNLCDCGQGYQDIDHLVWACPDHQAHRIKLKDTLRARG
RPPEIPMRDALSQLDLDVLYPIYQFLSDSKISI
>I_Ele16_pol#LINE/I 1704-6794  [Aedes aegypti]
MANNHQREFFTNFQNDDPAMEKDTQMEERISHLCRNNVVSSLTSEEYDRINNHISKPSTSRTYFDSPSARPTTSTLIRDV
PVQSEEPLAAVDVVRPSPRASISSNYVCIKQSKFGFNSSKRGIDTITRPTVKNTMSPTGKPRQGEGECIVTSPIPSMEEH
IRWISNGDSHKRITLRVSSWNQRSNSTKTTRPSIPYDSPSARPTTSTLTREVPEHSEEPLAAVDVVRPLSRASTSTNYIP
KKQFNLVTPQTKPDSGATIRPAVYSSISSTSVSHSTTNQGSTTTTVTTTKRLRSPTFSDSQCSNPTKTTRPSIPYDSPSA
RPTTSTLTREVPEHSEEPLAAVDVVCPLSRASIHSNSLQTKQFNPVIPPTNPGQEIHYHHRNNNNASPTSVARREGKSSV
AYSSRTFLGTEEQGSMGEFRSCSWNQTEASHDVTCKSNAPPSTPRNTRFSIDADSPRSSSQMNGINSPRSPSRASDDSEA
SSLTAQRTESSFAIQWNICGLRTHLSELQILIKKYQPLVVCLQETNADYNRIAPSCLGKEYELLLSQSSTHGRQGAGMAI
KNGTPFQRIWLQSNIQAVAVQLFAPTTITVVSVYLSPSEKDAVKLFGDLLEELPKPILVLGDLNAHHAAWGSKITQPSSR
AKTRGEGILDLVVRHNMVVLNNGSHTRIDPVTGASQALDVSICSTSHAAKFSWKTLLDYSGSDHLPILLETYCNQFTSKC
RSRWIFEKANWQLYEQLTTDSLRPGYTLSVDEFTDRIITAAEASIPKTSGNIGQKSVVWWNPEVALAIKSRRKRLRALRR
LGDDDPQKIVALKQFQEARSHCRKAIHEAKQSSWDAFVESINPDTPASQVWNKINKLQGKRQRNTISLNLETGHTNNGPT
VANALADEYQQKSSDANYPERFRKKHKKDKRTRCVTQRPNLHKRYNTDLTVEELMWALDRRVGSSTGPDNVSYQLLQRLP
FSGKTALLELFNRIWASGCFPAQWKIGTVIPIPKPGADRSKPEGYRPITLLSCLGKLFERIINRRLMTELESTGKLDSRQ
HAFRAGKGVDSHFAKLESIINLQNDEHVEIISLDISKAYDTTYRPEILHTLTKWRVTGRLMNIISSFLTDRFFRVAANGS
LSSLRRAENGVPQGSILSVTLFLVAMQPIFNAIPGDTEILLYADDVILIVKGKNHVTIRSKLRKAVAAAVEWSSNIGFTI
APTKSKLLHICHLKHRKRGKAIKIGSNPIPHTRYMKVLGVLLDCKLNFLKHLTSVKQSCRKRLNIIRILGYRLKRSSRSS
LLKVGSALILSKLYFGIGLTSINFDAMQCTLEPIYNDVARQASGAFQTSPITSIMAETGWTDFYSALIQRLCVLAVRLAE
KNEEANDYPVVQRARRLVLEKTGWSFPKIHETLRSSDREWYVPPPNIDNELKRTIRAGTNHSVAVQKYKELVNVRYRTHE
QIFTDGSKYGDQTGAGIVMNDSHFSYRLPDTCSVFSAEAFALMMAVSKLNGQAKNIILTDSASCLEALAGGRSKHPWIQA
IERKIVGQNVTFSWIPGHSSIAGNEAADQLAKQGRHQPLQDIPLPAQDVVREIKRRIWTQWESQWHQQRCVLRSIKPTPG
KYPDRKNPSEQRVLTRIRIGHTRLTHAYLMDHNDPPNCRHCGVQLTVEHILVECRGLQSNRKNCGINGSLAEILAYNTES
EKAVIKFLKECNLFTKI
>Ag-Outcast-5_gag#LINE/Jockey 84-1037 [Anopheles gambiae]
MVTKDNTFKVDFNPMPQRPSPGYVIQFILEKIGVKKESLLKVQLMTTTAIAVVQIKESGEAIKIVDNHDGKHAVDYNGEK
YFIPIKMEDNSTRVIIKNCTDQITNEEIKKAMMKFGEVKKVIDCVWEAPSPIAGIRDGNREVTIVIDTPIPSFVSIKGEK
AHVQYNGQQRTCKYCELNMHLGMTCLQYKKTVTNNNEDEGTYANMVRKEGVKSSVQNRLQLERAVEGLNSGEKKQDNTLF
KKPVNTIKERRVYESVEEAPSTSKANAQKRTGIVDSHTTTETEDESCMETETELKKLKGRPKKTKTLTQETKQDNNTN
>Ag-Jock-12#LINE/Jockey 1378-4026 Previously represented by 55235902_Aga_pol, gi|55235902|gb|EAL39164.1| [Anopheles gambiae]
MDAKLRIATWNACSVKAKKIPLLDFLQRRAIDVIMISETFLRPEDNLSFANYHLIRLDRTTGHPGRGGGVAIIIRRGIIF
RQLPHYRTGIIEAIGIELQTSSGGIILVAAYCPVQCNRRNGLAAAFKRDLITITRSRSRFIVGGDLNARHPAWNNNRRNM
NGVALFEHAQEGHYAVHFPDTPTFPRSGSTIDFFLSNVDLDKPTTLDELISDHFPIVTEVVCSISKAPLVFRKNYHNVEW
VRFGRLVDNDVTDTNVRTVEDIDRAINEFDRAIKKAEAACVREYPVRGEYIELDPHTRALIVERNRLRRQYHNTGNVTCK
SLAAAIARQISARLEVIRNENFGHSMARMDTRAPAFWKVTKVLRKRPKPIPPLVNTVDNLMAVTPEAKSNALAKQFASAH
TLGANMPSPHEAEVAASLSLVDEAQSTVPPEGRVTTGRIRTALRRLKNMKAPGFDGVLNILLKHLQERAICLISNIFHRC
LELGYFPDAWKCARVVPILKPGKDPTNPGSYRPISLLSSLGKLFERVILESLQETVETLDLIPEEQFGFRPGHSTTHQLF
RLKQLFEKNKREARSTVVAMLDVEKAFDNVWHGGLIHKLVTFGIPMYLTKIISNYLQQRTFRVALGTTLSDVHLLPAGVP
QGSLLGPLLYILYTADIPALPCDGKIFLFADDTAIAVKGRSLTEVSRRAQRCLDTYIQYASSWKTRVNVAKSQVMIVPHR
RKRSLIPTMHSRVEVNGVMVEWTNKVKYLGLTLDSKMLSHGQVESILRQGQTLLMSLYPLISRRSRLSFVNKLAVFKQII
QPAVLYGCQVWGTCARVHRQKIQVMLNKMLRMIANCDRYTRNSDLYDICEVAPLDSYIQQQTTKLIEKCRDSTHRAVREI
ASI
>DOC6_DM_gag#LINE/Jockey 178-1347 [Drosophila fruit fly genus]
MRTKRNKPLVERQNERGSKQFTNYFRPLQTLDDDNDDKPIETDTLDEIIIKPPPITLIKQNTKFVHELMAKIKTDDYFIK
TISIGIKIFLPNMDCFNAACNQLKEHNCEFYTYDTRSNKPYKAILSGLDKLPIETVKSMLQNLGLQCTEVKIVEKKTKSD
HELLLYIVYFVNKSITVKELRKNFMYVNHTKVRWEYKVKLQNKITQCYNCQLFGHGSNNCSVKTSCAHCAGSHQTAVCMD
VNNKKCANCKGDHPSTELTCPCRISYLNLLSKRSSQRIGRNNLEAHGMRNSKQHIAPSALFGNQPQISLPTQTKRVQQLN
FGSYSNALTNIHTLPNPKANITNETNLFSCEEINSLLSELITRFNECSNKGEQFQVISQLAIKYVYTNK
>Hebe_Av_pol#LINE/Jockey 1670-4357 [Adineta vaga]
MLSLCHININSITKHKDELLARFSKYDIISVNETNLKSERPFTLFGYNIFRNDRIGQAGGGVLLAVKQHIKCQEVLNKTT
CKNEAIAVEIRTKSFKSILISSIYVPPKAKIDINLFHELYNVNNNCIIMGDLNATLYNMGSQQANARGRQLQELFKDGLI
DCVDDDSPTFEKNDYEVKLDWILASQPLLSFISNVETHPTIGALNGHKPLTFDIPCGAEPKPASSRILFNFKAAKWSKFR
CKLDQQLMLWKNDHHLDSTADIEEYTSFITTSILEATKEAVPQTKQMIRTYTPSEVSISLIKQKHQAYRKWKKTGNNLDK
HLYYNSKVLLTNSLRNDRRNNFNKLMSSLCHKKMYSDKVWLTVRKFHNKRIKQTYANIMKYNNTTATSDKEKADLFADYF
ENEVYSHTADTLPLHDQVTRQANKVKSKTITSSNTPKWKQIKEKEVKNHIRQLRNSSTGPDNIHNRCLKNHSKLLVQHLT
NLFNAILKQGYIPAMWKKANIILLLKPKKDKQQPSSYRPISLLSCLGKLLEKIIKQRLMLELERRNILPQHQAGFRPGKS
TIYNIVRLERYAAGQLRRPRRRRHSAVILFDIKAAFDSVWHDGLIYKLNDLRLPCFIINYLISFLSNRTAAIEIENILSR
PFNLKSGTPQGSPLSPLLYIMYTADSMNGIPTHTEHGLFADDTALWTSGNTLTNLNTRLQQSIDAFESWCKSWKLKLQPT
KTELIHFSIHPRKHYKNPVKVKVEDTIIKPLDSTRYLGVIIDKRLKWRAHLEHIESKIAPRIGLLRYLSRTAYEPNNKTM
INIFKSIVRTVIIYGHPILLTADQKVWDRLQIMQNKAIRAALGLPIYTSVKYIHKISNIPKIKDYAIGLLKHTLQKATTN
NDITLKNHLQCILDKI
>DOC6_DM_pol#LINE/Jockey 1328-3982 [Drosophila fruit fly genus]
MFTQTNNFIDNLNIMAWNARAVRNKRIELIKFLENNHIHIALINETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSN
TLIHEQIPCIKSHVIENVGIQINTDSNSSLKIYSIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICG
DFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPHNHKAKASTLDLCLTNIPNQLANPAVMQELSSDHLPVV
IKYSTNFMRNVKTYPILGRANWALFKRIINERLMVEEVVVNCSQISTLDIDNLIGSFTRVINYAFLKAVPHKPIHHSKLT
LPVHITELFKTRNIIQRQWFRSRHPLLKSRCDHLNYIIRKELFIYNNAKWNNKLQKLDKCSKPFWNITKAIKKRKQIVPC
LSKADEIYASGKEKANILADVFQLKHNLTHSYSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKALHTRKSPG
IDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKLRLV
KFLDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQ
NFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLN
ELDIYYKKWKIKINPNKTNAIFFTKRRKPRYLPDRQLRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICT
LYPLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLHIKAGVQKVQQ
KIQY
>Nimb-1_CQ_pol#LINE/I-Nimb 1714-5325  [Culex quinquefasciatus]
LIQWNCNGVRSKHAEIQLLINKHKPTVIALQEVKLQHQNYSIKGFSIFSKLRSNHGGGVMLAVRDGVDAEQVTLQTTLEA
VAVKIDIPVKATVCSIYIPPNEEITRSDIEDLLEQLPGPVILAGDLNAKNELWSNDDDARGRTLASTFEETNLVVLNDGA
DTYQPHQACQSPSTPDITACSAPLASRLNWKLAEDVHSSDHFPILVGFSGVSVPEKRRQSWIIPSADWNKFELDVYNSIN
PEQQYTIEELTAVIISAAEASIPKTKEDIHPRSVPWWNERVAEAVKQRRRALRQLQSVRKQRRVNETLIQAAHEEFKQAR
MKARKVIEEEKSRSWQEYVSTINEDTPPSEMWRKIRSISGKRSSTRTWSVKVGDRQTSDSKEIAEHLAEFFEQSSSDSSY
PDDFRTRKTRVERRPFSFPGDRGANYLQTFSKDELLTQLNDLSGSSPGPDGVHNTMLQHLPAIGKDKLLDAYNSIWTSNT
FPATWKETILVPIPKPGKNPNIPGNLRPIHLSSCVLKLFERMINRRLMDTLEERNVFGQHQAAFRKGRQTLDTLASIESY
GKNAIATKKHAEFLFLDIEKAYDRTWRRLILEGLAKARIGGHMASFCSRFLEDRRFRVHFNGEVSSLKVLQNGVPQGSVL
AVTFFLLAIDSIRQYIDRDVFLELFADDITLGVSDVNVRRARQKLQTVVNAIARWSKETGFKVAISKTAAMHVCFKRFHA
KKQPTLKLENQEVEFVGSHKVLGVWLDYRLSFKRHLAKTKAECRRGLNLMRCLGKTKFGADRVTMIHLIRATLLPKLLYG
IPITSGAGESEYMKLAPVYHEAIRLATGAYRSSPIDSILADSGLLPFNFLVDEHLILYSTRQLARNRINRNYPVALRART
TATKLNVNMSQVIVADAPAPNDWVLKRGTCRADRFGCEPPAVQRAVFRQTVGELYPNHAQIFTDGSLNETGGVGCGVYSS
STSRSITLPSQLTIFSAEAYAILEAIELAKRNPHQTVIFSDSKSVISAVKGNKTHHPWVVKIRRELARLRDSVELCWVPA
HCDIDGNEKADELAKTGASSTQNAELEEIPYPDFKLCVKKLLRQRWNQLWYSCDTKLRRIKESSTEWLSSRTLTRRDSRA
ITRLRIGHTHLTHGHLMANCDPEPCETCGETTTVQHILVDCRKFEHQREESGIANSLYVALGDNLDEIGKTLEFLRISNL
YCSI
>Ingi2_pol#LINE/I 157-5679 [Trypanosoma brucei]
MKIMKISLVTPATSSWCQGLVLRPGGSQVPALYPVRQDWGWKQAFGDQRRSKKQHRHSGVKKYIRLLLCTCERASIGIHR
LLLLLSGDVEQNPGPIIRGAQWNAGGLSQAKRIALEKKLHEDMVVFCLLQETHLAAEECCALKISGYQHMGMARSPHGGG
VSILVKDGVGVIQGPKEEGLPERVSATLMFSADLMLTIKSAYFPQKKNVTTSTLESLESSNRTLVIGSDTNAHHELWDPL
RPNDTAGECIVDWCLQNDIKIANDGTPTRRMPHTATRSSPDVTMYRDCEVTRWEASLSPDSDHYWITFEVCIGIGVEMIA
ITKPRRALYAWNKANWREFRKVCDVTMLKKLRKSRKNVDAMNEAVTKGIRTAAKKTIPKGKGVSPPFWTRELTELDTKIR
ECTNEKHRDALIYKRRKVLAETSLQRWKENVSKMSVTDTKSWNLVKSIYAPRPLTSPVLVVNDHPLTRRQQANKLAQMYR
ERSTKAPDAPPMSIPYRVSGEFAPITMAELETALKELSSGTAPGKDDIHCEQLKQLGRCSKKCVLKLFNCSLQRHRVPEK
WKQGVIVSLLKPNKPAKCMSSFRPITLTSTLCKLMERIVARRIRDTVECKLQPQQAGFRPGRSTSLDALMTLTDSVTHRV
AGEKTAAVFIDYARAFDSVDHRCIIDALKRYEVDMHLIAWVANFLEGRTAVVRINNTLSKKIQLTCGVPQGSVLGPLLFI
IAMDSLSAKLNAIPALKHCFFADDLTIVCSNTDREAIRQTLQTGLDCIASWSAEHYMEVSAEKTEYTFFGVRDRDSLHLM
LGEHRLNETRNPRLLGVTMQPHKGVSKHAHTLQTAANMRLMKLRAVASPEWGASKESVRAFYLALIQAKLCYGIAAWWFN
ASPSDKEKLERVQAQAAHVIAGIPKYANRQDVMKEARLHKIDDIAHRRAIEYYLTRKANGKASADTVEKMFPPSHPIHTR
LQSVSHLYEEVDRPEKPHTASVLQLARRPYFNTTTPGGLHSDASDSEKKRHTMQRVRRFKDYDYQVWTDGSVILDESSGA
GAIIYPRQGNAVKVKKGAGRLACSYRAECVAMEAGLMKLKSVIKINESRKTKVAIFTDSLSLLMALKTGPAVVTDSILRR
IWNLIIHFMKLRVAMSFQFVFLHCGIPRNDKVDELANKGNHMPQTYPAWITDIVTGITRQLRNQAQRDFAEGRGPNTHRS
ALLNHIKPTPKKKELDREDESLLAQFRTGTSKHFGWLHRVITRKVDELECRWCTNHTGNILKNTPVPTQNTVKMEETEEG
KVVIATRQNDPVICPVCNIVCARRQAGVVHMMKIHQWVRENALAALKMAPRAAQAYNGVYRCHVCGKVFDRKGLLQQHMP
QHPPTTPVVWTERQKRKREEEQSLPTVHKCQWCPKQYATYGWLTRHIRLKHPEKQTEVTQQTEMQDVSSEDEQEQAPQAY
ECLRCKQVYKSKTWLTRHKCNPEQSKGEPSTPLQEALPEREACKICGKEYHHSWMLRHMNAKHPGHDISLRPQPIKIRKV
TKEISKLQAKEDTSGDNKNKDDNEPPLYVCDKCKRGFKSKTWLTRHKCVSIERNGTKSENVNNPHRAATQLETTTKNGSK
PGSIDRALPNSDSSHTQNLNSTTRKRKRETEHDTPADEMDMCDQREEPKHKRHKAQGHTENPRREFACGRCENTYMSWCT
LVWHTRTHHKNAITVKRKREEGPLEITPLAPLVHQCPHCSKVCAHKQYLTMHLQAAHGQARSSDRRNELKEKCKETSAHL
LQCPALSKLRSEHGVDSLKGEDIYFSVKLANFLRALFFPTANPAPTIDTKKLITRPRVKRKRKKGHHHAKYPLTTCDTLG
>I_Ele19_gag#LINE/I 381-1724  [Aedes aegypti]
MTDSSAGPFGGAAGLRRNKPDWMMDPNDLGQVMVLILRRKTDAADGQRVQDESLPDSIIVGTSIEIIIGKKAARALKATR
EGRGTRYLLRTSSTEIIEKLTKMTELTDGTKIEIVPHPTLNTVQGIVYDPDTINKDEKSILEYLDSQGVHAVRRIQKRIN
GTLKNTPLLVLSFRGTILPEHVYFGLLRIQVRIYYPTPMLCFNCGCYGHSRKFCQQSAICLRCSAPHHVSEGEQCTNPPN
CLHCRTEHQVTSRECPKYREEEKIVRLKTDKGISFSEARRLCAQEAKSQTFSGIVQEQIQQELAAKDQLIATLQKQVAVL
TKELSALKKMLRPATQSQSPAPRDRRPSLSNQKSSSLMAPPTQNSTQHSTDRPSRKDQPTTSPKAPRQEDRKTNKSSGGI
QTRSRSGKRHMEVSPTEAAHSRGKRMPSQLDTNTTFVDIEMNNGPGPS
>L1_TC_pol#LINE/I 138-4790 [Trypanosoma cruzi]
MEPFTWLPAERYFYPLLNSIGAYQRYTYRLRAVCDAQRQKLLLSGDIEQNPGPIAVLQMNVSCLTPSKLATLMAQGADII
AIQETWKSSEQIASMHTGDYVLYAQSRIGKGGGVAVLVRKTLRSKRIPLTIPQHDTSLEVVVVQVALDQNRDLIVASAYM
RPPPQVTQSFRRLVNCLPASSPLLLCGDFNMHHPQWEPFLETSPSEVAAEFLELCTDAGLTLVNTPGEITYARGTRERSC
IDLTWSKHLTVSDWSASVSPLSDHYMLTFTLHQAFKDTIPSAPPSAPKFFYSWGKCKWDLFIKDFDAQLPAYDYKKQSTG
IKAFTRALITSYRRHCPRGMHKDGPRLWDDTLMEAERIATDSKARYLQLPTPDREAEMQRTRSQFFLLLRERLRNTYLRR
ISKLNPGEPLAWKYISGRKKASLPSPTSMLLGDGQHTYKTARRAANALNRIFLPFHPSHKAVRFSKGINRQSASLNINAS
FLFGQQNNSESAASFTSFSSTSSSSEPQNNNESAATFTSGSSLSSSSEPQDKNEAATTSGLVAHLHSPLDAPFNRTELLA
ALRNTPYGKAPGPDEVYSEALRHISSKGLRFLLRCINHSWTTGTIPVEWRRATIVPLLKPGKSPELLESYRPISLTSIVS
KVAEKMVLKRLLWVWTPHPHQYAYRSMRTTTMQLAHLIHEVEHNRNHYFQVSLPKKSGIGNQLHYRPHRTLLVLVDFSKA
FDSIDHRVLSRLLANIPGVNCRRWLRNFLCGRYAKTRVGHRHSDRRPMLRGVPQGSVLGPYLFSLYVHPLLNLLNSFAGV
TADMYADDLSIIVKGQSREDAIPTANMVLQKLHAWSQENGLAINPSKCEAAWFTLSTHTESDYDREGRWPLVVAGCQIPV
MTMGASRTTKLLGMDLDPRLTLNVAATKQCAATSQRISQLRCIAHKEAGPSPHDLRTFVIGYGASKLRYGSELIWAVATD
SAKNEMQKTYATLARIVSGVPSTVDPESALLEANMPPLHVLCLRARLSIFENTRACQMDWMRRPPPEPPPRAGFRISPLS
RDELYAFVDAYTKDYGITESSPREERFFRSSIPPWFAASAHRVTIGVELPIDHSITDEEELIREKRRVSEEALALHSHRS
WILATDGGVDVPKSAGVGILLSSLNSSEIIEKASINCGARPCSYRTESRALLLALEKLMIPRIRHRRKTLLVVTDSQSLL
AALNKGPLSQTDWTEDQIWQRLLTLTRAGWSVHLQFCYGHCGVHANELADQYATQTMESGQYTEQGIAPLWHTDLLTCFT
TQLTNKWRSTIRQDTHRYLLCGTRPSDLSGKDLITQEVLHRQELVHLARARCGESELWGRLYWAVRDCTNQCRFCNISPE
QSAYMRSNNDPTAPGTDTVPPSAREEDVSPVRRRTLTRRRKEKCPHCDSTLTGFSGLVSHCRSFHPEHPPPLPELKCDFC
DMVFPTRRSTAQHRSRCAHNPDATRHRNSSARRRSLLPQDQPASTSTPIGPQETLHHLLLECPGTLAVRQRLGIEQDLRL
GKFSQWQLLHSRKLLSLLDHLFGTQMALYS
>Nimb-1_AAe_gag#LINE/I 719-2092  [Aedes aegypti]
MANMATAKNHPPDPPPEGIPGPSYVNHNDRTVPEWMDRLGMHGQRIILSLRPAGNTPLPNPWIIGKSIENASGRSKLESA
ETEDKGTKYILKTRNAEQAKKLMQMTELIDGTKVEIILHPFLNSCRCVVSCREVIDMTESELLNELTPQGISGVRRISRM
DGNQKINTPTLILTVCGTVAPKRIFFGPLSAPTRLFYPRPMICFNCCEFGHTRVKCQKMPACTNCSGNAHVEGQQCNQVP
YCKNCQGDHAPVSRKCPWYAKEEKIIKIKVEAGVSFGEARKEYEKLHGKESYAAVSGAQARIEKIQKDNERDNEIRTLKD
EIVKLREANNKISNDEKDREIASLRKEIEGLRKVIEGMSQNRVVLGKQRFNLDISETEGLASETEPQNTEPEAMEDEDIY
ELRGSKEQNGRKRGKNVESESDNSKSSDKFEEKQGNQSKSNNTKRGRPPKHRKNDQRK
>Loner_Ele1_pol#LINE/I 2029-5709 [Aedes aegypti]
MDNSSSEVQDMITVLQWNCHSLKPKLDTFKFLLHNSDCDIFALCETWLSSEDDLNFYDFNIIRQDRDDNYGGVLLGIKKC
HSFYRIPIPTHPGIEIVACQISVKGKDLCVASVYIPPRVSINRRHLWNAVSMLSSPVLILGDMNSHGTGWGESYDDYRAA
IFYDLCDDFNLNILNTGEVTRISSDGKESRLDLSLGSSSLSFDCMWKVIDDPHGSDHLPIITSIRNNFERSEQSIQVPFD
LTRNIDWQKFASAVTFGIESFNTLPPLDEYRFLTELIYKSALESQKQRVPSASFKRRPATPGWDDECTQLYREKSNAFKA
FRRYGTSELYLEYSKLEKRLKNLIKAKKRSYWRRFIDGLSRETSMTTLWRVARNMRNRSSSNESDEYSNRWIFNFAKKVC
PDSVPAQPPSWETQRDDALDRPFTMLEFSMALLSSNNSSPGRDMIKFNLLKNLPDIAKRRLLDLFNLFMEHNIVPPEWRQ
VKVIAIQKPGKPASDHNSYRPIAMLSCLRKLLEKMILSRLDHWVESNNMLSSTQFGFRKGKGTNDCLALLSSDIQLAFAD
KEQLASVFLDIKGAFDSVSIEILSESLHNSGLPGILNNFLYNLLSEKHMSFTLGQLTTSRISYMGLPQGSCLSPLLYNFY
VKDIDNCLEEPCTLRQLADDAVVSMKGPRAEILQRPLQNSLDNLSTWARNLGIEFAPQKTQLVVFSRKRNPAQLKLKLLG
TDIDQSLTSKYLGVWFDSKGTWRTHIRYLTEKCQQRINFLRTITGTWWGAHPEDLIKLYKTTILSVLEYGSFCFLSAANC
HLIKLERIQYRCLRIALGCMHSTHNASLEVLAGVLPLQNRFWELSLRILIKCGVSNTLVIENFEELLKLNTQSKFMRVYL
YYMSSDISLPCYNPPRVRFTNDSSSVEYDLSMKQAIHGIPDQLRCITIPRIFNAKYQNVDSYRRYFTDGSRINGSTGFGV
FNENSSAFRKLQEPCTVYVAELAAINFALGMISNMPADHFFIFSDSLSSIEALRSMKPVKHASYFLTKIREQMCALVERS
YKITFVWVPSHCLIYGNEKADSLAKVGAEEGEIYDRRISHDELFHLVRQSSLHGWQSDWLNDQLGRWLHSIIPRVSLRAW
WKGWDVSRDFIRVMSRLMSNHYSLDAHLHRINLALSNICNRCGSGYDDIDHVVWQCPDMDASRAQLMDTLAARGRQPYVS
VRDVLGSRDLVYMLSIYDYLRLCCIKV
>CR1_Ele40_gag#LINE/CR1 383-1240  [Aedes aegypti]
MTSACDHCAKPIKGEDESVSCMAFCDRMIHLRCSVTKLNKNFVNIVQTCPNLFWMCDECVKLMKCARFKATVSSFGDAIN
AMTERQELAHAELRKEIAKQGEQIAKLSKGIALSTPTLSGSGGLVRQPPLKRRRNEGLSTSKPLVTGTRIVADDNVFTEV
RTVPEPPEMFWLYLSRIHPSVKSESVEKLVKDCVHCQDPVTVVPLVKRGADTSRMSFISFKVGMDSKFRETALNSDTWPQ
GILFREFEGTGSKNMWLPQLTTPTISITPAMERSPFVTPTTSMDQR
>CR1_Ele37_pol#LINE/CR1 1248-4919  [Aedes aegypti]
MGALEPLDTVAQAASRHLSRSGPVVEYGNRVSQPSHTGKYSSFSSSSPLDQFSRSSAVDPSATTSNRLYSQIAATMASSY
LESADNYLISIDGPSIEAHCATQLFSQPGRTVYSFLEAPDSSSEVVPSPAIAQHSRPGPLARCGSGVFHRALTGKYIQAS
VPSSPDAPSIFSVNDDISTSSAAGQPERIVESFMEALDPSATVLPLAAHVHHSRSGPVVGNGERVFQQPDSGEYSPVSTC
THSTPDALLHSRISEPSAATSKLDIVLYYQNVGGMNTSIDDYRLAVSDACYDIIVLTETWLDSKTLSNQVFGSGYEVFRC
DRNPNNSCKRTGGGVLVAVRSGLRVKALDNGLWRCLEQVWVSIQFDGRTLFLCALYIAPDRVRDVELINAHCQSVFSMME
SASPTDEIIIVGDFNLAGVSWKPSHSGFLYPDPECSSFHACAINLLDSYSAATLTQINHVVNENNRSLDLCFVSFQEKAP
IISEAPCALVKDVAHHPALMISIEGYQISEFDDRPASVSYNFVKADHRSIADVLSSIDWATILDPRDVEVAATTFSNVLS
YVIDRHVPKRIHLQDAHPPWQTKELRQLKSQKRAALRKLTKHRTLPLRDDYVRINNEYKRLSRLCYSQHQRDIELKLKNK
PKSFWKFVNEQRKESGLPSSMELNGEIASTTQEICQLFAEKFANVFNDEGITEDQVSRAASYVPLNGESLSAIDVQFDAI
TKATSKLKSSNNPGPDGVPSALLKKHIDNLLVPLRHLFQMSLSSGTFPSCWKTAYMFPVHKKGSKHDVNNYRGIAALCSV
SKLFELVVMEPLLSHCQQYLSPDQHGFTAGRSTTTNLLCLTSYITNSMTERTQTDVIYTDLSAAFDKLDHAIAIAKLDRL
GVSGNLLCWFRTYLTGRQLLVSIGDFKSSSFSASSGIPQGSHLGPLIFLLYFNDVHLLIKGPRLSYADDLKMFLQIRSTT
DCHFLQQQIDAFANWCSLNRMVVNPVKCSIITFSRLKQPTLFAYSLYGTIIERVNHVKDLGVIMDSQLSFRQHVSYTVDK
ASRTLGFIFRIAKNFTDIYCLKSLYCSLVRSTLEYCSAVWCPAYNNGAERIESVQRRFLRFALRKLPWTNPFRLPSYESR
CQLIDLELLRTRRDTIRALTIADTLQGRIDCASILEQIDLNARPRLLRNSSLLRLPLRRTNYSTNGGINGLLKLFNRVAS
IFDFHLTREFLRRRFSSFFAGRNN
>LINE2C1_CE_pol#LINE/CR1 180-3083 [Caenorhabditis elegans]
MLHLILVSAHWWLCLPLCLIPSPSSPFLLLITLEIRPLPPPTCQKNAPFLNCHLANTRSVACAERLVALHEYVRANKIDI
LCITESNLSTQIPLALCSSHDILCLRCDRGPPHPKSRGGGVAVFYSKSITLIQADSLLDQFYPLHSCEIVTFDHKLSKSR
FIIVYRPPLTSVTETNYLFENISLLLTSQAKNHYILGDFNIPSARWSRDIPVPPGIPQALEDLIISHNLTQMVNFSTRVA
FSGIGNFLDLIFSDNPNTFLSCSPSLPLICSDHSTVSFTLAIDCNSKPLPPPKTKSLDFRKCDFLSLNQHLMSYNWPRQL
SYFSNTDSKLAHFSRIFNELIVLYTPIAKPPRPKSTCHKSIYRLARRACSNTISVRRKMRKELKSIKRKFAHEEDRAIHS
TDPRSVFQLVKKRISPRPQPINLDINNETVSDPVRIADEFIHNFALSFTAPCPPFPALPAPKPSKLSPDFSPFNIHRHIK
ALKAKIGFSTDNINFFIIKKCSDSLTVPLSIIFSESFSSSFFPTPWKTSIIVPLHKKGSTTNPGNYRPITLTHPLSRLFE
RVVLDALKQKLSPLLSSKQFGFLPARSCTLAVLESTSKIQKVLLDKSKYVDTIYFDFKKAFDSVPHNLLLLKLLNVGLDS
GCCEWISSFLSNRSSKIKIDHFISDNSFNVMSGVPQGSVTGPFLFLLYINDLLDLFPPDVHVTAFADDLKLLGSDPTSIQ
TSINIVADWCKKWRLNLAEHKTAVLHFGKQNPRHKYFVNSVEIKPRDSIRDLGIIVDTKLSFVNHINQTSNSALLKCRQI
LRSFRSTSPEFYFKLFNVYIRPVLEYGCELFPPNSTKLAKKLESPLRFFSKCVFQRCNLSYSSYSSRLSQFNLLSTHHRR
VLQILRTFHKIISSEYHFPSLSSFVRASRSTRHPYLLVVCGVPSKCFLHVNLSLWNRIAKRFPKLLTPNAFASRLGSIPF
DTLFPPT
>Perere_pol#LINE/CR1 357-4505 [Schistosoma mansoni]
VESLAGSLLKHDDLKFELKTLSPLRLLLSKDIVTSEFEDRIKVESVIDLIASEVTKRIISRNNVVIYNIPDKVAIKTVRN
SILKAVNLQDNPCQCIRLNKKHQKYSCPIVFRFDSHLLAERLKESEQLVCAHTKFKNARIVSDKTTNQRLTQKRTMNENN
IVEVTTNVIAPEAEPTGTANLSHVSQCTDIPMQCASLPLILIVALDNQDISDVDSNVILSSVISEAKDRTPDSIVKAHKN
TAKPKKNIPIKKKVNKKPSGSRPNTKNISTALPNKSLISETMLNPTHRKGGYKDTFRSNVTRDGHYNHHVSRPTIRQTGM
NQRAAWFPPNVINNKPARCNSYHHSCSGEDGILGYAPSTQPQHTGTCLNCPPKQVQPYQNKDFFRPPEIPCSTSTTIRSC
YSPCDPENTLNHSPGIARTHTLDKDALGFFTLHTPFLNLLLINARSLLNKISALRTLAFLAKPSFILITETWCYPAVADS
ELNIQNYRLYRCDRETKRGGGCLIFALDTLTTNKVEDSILNSLPESIWISINTLNHSLLLGCIYRAPDSTDNLNDRIINA
FIHASTLNFSARIITGDFNYPEINWSTGSCQSSNDEFLSILNLYCWSQWVRTPTRGDNTLDLIFGRDTIPLSVQVYNEFE
SSDHRMVACALPIYPSYNRPIQRTCNYRDYKHADWDLLRSLIKLSDWDEFFSCNSLTDAINIFYLIVNSCLDSCAPIKIY
RISKHHELYIPAKYRNKLRRLKKRYFKSNDFTAVTQITIIFNQIKEKHRLKAINEELLALRTSSKVQNLIHIYNKRAKST
QNVDIPCILHNNSFIYDPKTIADLFSGNFANSKESLNDFVSRVICLTGNSIKSISFTCLKISKVTNKLKVSKGHGADGIS
SFLYKYGGPDIQLLLLKLFTLSMESGSYPDRWKTAYIIPRYKSGDKTDMNNYRPINITPVISRIMEKIISDELPNYLLTE
QFIDDSQHGFLKNRSCMTCHFDFFNLVYSLRSQGYLVLVLYLDISKAFDMVNHQLLIGKLASYGVENPLLAWFDSFLSDR
HQIVKINSSLSNSVPVRSGVIQGCVLGPLLFLVFINDICECFSVGKSLLFADDLKVVYSFSPHELSNIRNCISTELNKVA
QWCSEWQLELNTAKCGCLCFGDTSLNLNLTINGEMLSRLHTVVDLGLRYSDDLSFTEQIMKQTSKSQRLIGFITRNLHNS
ESRILMYKVCVRPLLEYCAFLLISTRIKDKLRLESVQRRFIFRTLGTDSVLTYNSRCSKLGLDPLWMRRLKLNLIFFFKI
LNKLSFTSSQEIQYAKAPHYDIRNSLSLAKQTYSRSSLYMNYFTCEFSMLWNNLPQTIRMLNSLPLFVRSINAFCSSENA
LNALAHASVSYSTSEIIGTLNV
>Perere-2_gag#LINE/CR1 367-1491 [Schistosoma mansoni]
MTGRCNKSICHRPGCRYPVDSGMQCDECKGWYHDVCTNLTPAAFKRFSKNGCVWLCQQCCLDANSLLTEAISIVNAAKKC
LGKRGRDTSVRTQSVDTQIDTRQAQVSPKTADPHPTKEEEHPPKRTVTTRNSRKKVSSVPRIKNGTQKGTSGTQNRKARS
VSSVKDDPTSQVVLNLPESHSTPDATVVTTPKNVGDWVRVVRKKRQNDVKGNPTPTKRVEKPRSDHSDRSVIFHRVKESD
SSEPKARFEHDIVLIKQLLNQVMPKNIPGVTLLKVYRLGNLAHLKPNQSRLLKVVFKSPNERDLILENGHKLKGSGVFLR
KDLPLADRVKRREAEKELQLRLDAGEKDLKIVNFRVVRLRQRMMPKPLWVKHEAT
>CR1_Ele37_gag#LINE/CR1 346-1203  [Aedes aegypti]
MSSSAACDHCAKPIKCEEDCVTCMAFCERMVHLKCTVAKLNKAFVRIVHENPNLMWMCDECAKLMKIARFKSTVSSFGEA
INAITEKQESVHAEIKKELAKQGQQIAQLSMRITPLTPILSQEPGTSSRQPPLKRRRDDGSVSNKPLVGGTKIVADANVL
TVPEPIELFWVYLSRIHPSVKPDAVEQLVKDCLHCEGIIKAIPLVKRGIDTNRLNFISFKVGIDPSLREAALNADTWPKG
ILFREFEDSTSKNLWLPRQNTPAILISPDPASSPFSTPVSGIVPSC
>CR1_Ele21_pol#LINE/CR1 1219-4122  [Aedes aegypti]
VDESRSHLKYPSNFSSTFLTVYYQNVRGIRTKTQELLLNLCSCDYDIVVLTETWLRPDISNDEFASSYNVFRCDRSSATS
SLQRGGGVLIAVKAELNCRSVELENCESLEQAVVQIKLQKFSVYVCGIYLRPNSQPELYYSHSMAVQQLCERTASADKVI
VMGDYNLPQLIWQNDEDIDGLLPCNASSEQEIALVETMVASGLRQINCLRNLNGRLLDLVFVNEARDIEVIEPPSPLLKI
DYHHKPLVLRMDLNDARMQFAEDSSQQRDFDFQRCDFAELNDAISAIDWEIAFDGRGTDETVCIFYDILYGILDEHVPRR
RRTRCSYKHPWWTSELQHLRNVVRKSRRRYFRARTDENRNNLRLIETSYNECQTAAFRSYVARLETTAKHDPTAFWNFIR
NRKHSTRFPAEMTYKKTIASCPEDVANMFADCFKNVYSSNPPTFSSDNLRNCPTYDLNLAPFDISRQDVYSALKNLDVTK
GAGTDNLPPLVLKECAESLQMPLEIIYNKSLRNSTFPSIWKKASITPIFKAGSSHAVENYRGVSILCSVAKVFEGLVHNV
LYAASTPIISELQHGFVKKRSTTTNLMMFTNFLSTEIEKRSQVDAIYFDFSKAFDKVPHELAIAKLRHLGFPDWITEWLR
SYLTQRVAFVNINGTHSSVFSIASGVPQGSVLGPLIFILFINDLCFRLKSGKLFYADDLKIYRTIASHLDCCALQADIKE
LELWCMENGMELNIKKCKSVVFSRRQSCIEFGYSIGSEPLERVESIRDLGVILDSKLRFNEHVNATTAKAFAALGFVRRN
ASCFKDIYALKALYCSLVRSILEYAVCVWSPQHTTHIIRIEKVQRSFIRFALRQLPWSDPFNLPDYTSRCRLIALQTLSS
RRSNLQRLFMFDLIRGNLDCPSLLQNVSFYAPNRHLRQRDLLLIRRHRTSYGFNNPLCVCSRLFNSVSDLFDFNVSKSVF
KSRIRVLE
>CR1_Ele19_gag#LINE/CR1 216-1001  [Aedes aegypti]
MAISVCCSCAGELVKAEEIVCNGFCRSSFHLKCVHQSVATRDAVINCSQLFWMCCACTKMMANANFRHAISSTNNAVEAI
SAEHSKALIELRQEMEQNTAKINSILSQIPSALQNRTGRRGSTSSNTNRKRPRIDEEDTQPESNVTVGTKEIDPQVTIPL
AESKTDDNLFWLYLSGFDPKASEDDIRGLVQQNLNTTDTIDVRKLVPKGKKLEELTFVSFKVGVGVQLKDLALLTSTWQK
GITFREFDFHPRPTFQFHRTQQ
>CR1_Ele25_pol#LINE/CR1 1480-5382  [Aedes aegypti]
MSSFHQPTSHNRTPGRRFAASLKEASIPLTAVEPLPPATSSRPGPACELEDEVFRNPISGKYADILSTSPAVPYVASSTT
SPIRVYSTSSFWNPGRILAASLKEASNPLTAVEPLPPATSSRPGPACEQGNEVFRNPAAGKYIDILRTSSAVPYVDSSLP
SNIQASSTSSNRTPGRNLAASRKEASIPLTAVEPLPPATSSRPGPACEQGNEVFRNLSTGKYDLIPRTSPAVSLVVSRSR
IPKDALTNSRLYDQWRISEGDSQLAQAGPSRNATWLSIPMPIPERTDTSSMEASYPTTVEKTGSSICRRPSLGCGVEDGV
FQAATIGNASSDARDRIAYFNTSSLPDSRSLCVYYQNVRGLRTKTHDLKLRLSSCDYDIVVLTETWLRPDISNSELSSDY
TIFRCDRNKTTSNLSRGGGVLVAVKGDLQCTEVSLSDCADLEQVAVCVKLPNQTLNIFGIYLRPNSEPSLYSTHSAAVQR
VSDSTSNNDVILVFGDYNLPHLQWSFDEDVNGYLPTNASSEQEVSLTESIMACGLVQINSFTNRSHRILDLVFTNFSDIS
ELSQPVLPLLPIDDHHPPLVLQIDVCFSAPSQLDPDPNILGLDFRRCNFSSLNNLLDSVDWDNQLLGHSVDESVGLFYDK
MYEILRSVIPRRRCVNLGVDRKPWWNPELRNMRNRLRKVRKRYFASKTVENRNLLCLVESSYNELIDMSYRRYLENLQLT
AKNNPSKFWKHMKAQKASHGIPNNVTYGDINATTHVEAAELFAKFFQSVYSATSPRVYPGCFQNVRTHNIHIPPFQFSHQ
EVLNALLSLDTTKGAGVDGLTPHLLKSCASSLVAPLTLLFNRSLNENTFPQLWKIATMVPVYKSGSIRLVENYRGISILC
CLGKMLESMVHKVVMSASISIISQYQHGFIPHRSTTSNLLCYTNVLFREIERRKQVDSIYVDFSKAFDTVPHLYAVEKLR
HMGFPDWISDWILSYLTDRKAFVKVNSSRSSTFSIPSGVPQGSVLGPLIFVLYINDLCHRFSSGRLCFADDLKIFRVINS
TLDCVALQDDIDSLLQWCIENGMTLNIGKCKVITFCRSLSSINYTYAINGTTLERVGSIRDLGVVIDSKLRFNEHITVIT
AKAFSVLGFIRRNASQFTDVYALKALFCALVRSVLEYAAPVWAPYHTSLMIRIERVQKSFIRFALRRLPWNDPINLPDYP
ARCQLVDLELLSNRRLKLQRLLVHDILTNNIDCPDLLSEVQLSVPNRRLRHTTLIAIPLHRTSYGYHDPFTTCLRNFNSV
CEMFDFNVSKDCFRARIKNIV
>CR1_Ele31_pol#LINE/CR1 1191-4868  [Aedes aegypti]
LSTINPGRTTLSTLEAPEPPSTVVSFLPALSSRPGPVFWSGEGVFQSVAIGKYSFNIDNIVPDALVDSSQLLQFRHSSSG
SIVAEEGCMPVSLMEASYPLISVESVPPSFISHPCPEFECGEEVFQTTTTGKYAYSLNNYVPDYSGASSRSLYSCLSGSA
RIVPAPGCTPASLMEAPNSLNTVEPFPPALRSHPGPVFENEEGVFQPVNAGKFANVRNTALPVISIASSYQTPDDFRSID
DVIEINDRPCTGSTAPSSSNLTPNVGTRLAGISSRTLSVYYQNVRGLRTKISRLRLLLSSCDYDVLVFTETWLRGDIESN
EISPDYAFFRCDRSESSSQHLRGGGVLIAVKNYLKCEYFPLDNCETLEQVAVRINLHHRTLYVIAVYLPPNSSQDLYTAH
SCAVQLIADRLMESDILLSAGDFNFPHLRWHLDEDINGYVPVNTSTDTELNFTEAMFASGLRQINSFINTNGRLLDLMFT
NLPEYLDVIAPCSPLLPVDSHHMPVIILLDESDTQTFPDNLETCFRFDYSACDFELLNSVFENTDWGRSSNYATVDQMLS
SFYESLAGVISRYVPRKRQAFISIYNKPWWNPELRHLRNILRKMRNRYFNTKNDHDKTRLRDFEQQYKESLYASHESYLA
SIQRNVKQDPSRFWDFVKQRKAGIAIPSSVSFDGVTAHSNTEVADLFATFFESVFSRASPVQRRDSFEQIPVHNITLPFV
QFSVEEVQNALEDLDSTKGPGTDNLPPLFWKNCAATLAMPITAVFNRSLRDRRFPSAWKTASITPIHKSGSYNCVANYRG
VSILCSLSKVFEKLIHAVLYRAAAPIISNNQHGFMKHRSTTSNLMCYVSAVSRELESRRQIDAVYVDFAKAFDSVPHDII
CRKLSHLGFPAWLTDWLCSYLTDREAFVKVKSTRSRTFNIPSGVPQGSVLGPLIFIIYVNDLYELLSSFNLSYADDLKIF
RVIASSADCVELQEDINRLLIWCDDNGMRVNSKKCKVISFSRSNSISLHQYNMGLDFLERVDSICDLGVTIDSKLRFNEH
ISIITAKAFTVLGFIRRHASGFTDIYCLKTLFCSLVRSILEYASPVWSPFYVKHNLAIERIQKSFLRFALRHLPWNDPIN
LPSYPERLKLINLESLSARRIRSQRLFIFDLITNNIDCPDLLELIPWNVPSRRLRNSVLFVIPFHRSNFGYSNCFHMCLR
SFNDVCDEFDFNMSKNVFSVRIRGLD
>CR1_Ele28_pol#LINE/CR1 1239-4867 via tfasty with CR1_Ele24_pol, 1 frameshift. [Aedes aegypti]
MEAPNPPATVAPLLSTFISRPGPVCGIGGGVFQHPTNGKYNNRIYRTVTDSFHGSSDSFDLCTSFELPSFIAIPGCTPAS
NKEASEPPLTVEPIPPATRSHPGPVFEIGKEVFQINIAGKYTQASNNFLPFTSSLASSEVCQRSPLDVNSPDMHQLNSLP
AQMWSPGCTSPASPKEASNPLITVEPLLPAFSSHPGPVFEHGEEVFRILNAGKYSPMLSNFSAVTSAASSVSSTPQLDHN
AQPPTTCDGTSSAPPGKHLFSLYYQNVRGLRTKISKLRLLLSSCDYDVLVFTETWLRPDIVSAEISPDYVFYRCDRSSST
SHYSRGGGVLIAVKCRFKCELVPLSSCEHLEQVTIRVKMSHRSLYVVAVYLPPNSPTDVYSAHASAVEHIANISSKKDII
LSLGDFNLPNLRWQLDDAMNGYIPSNISSEPEQSLVEAMFAIGLQQVNNLVNINDRLLDLAFVSLPEYLDLIPPPIPLLT
IDNHHMPFVLIFDECEELISEPDDFIENSNFNFNACDYDQLNEALAAIDWNAVLQCGSVDEMLISFYDKLYGIFNEHVPR
KRRKFTSTFSKPWWSAELRNLRNILRKARKRFFLTKSEGERENLHDVEIAYKELLLSSHENYVSTIQTNVKQNPSLFWDF
VKKQKGTTRITSNVHLNGSHASTNKEAADLFASFFESVFSRAAPVPRRDCFAHIPTIDISLPVIQFSCNEVLEAINELDV
SKGQGTDAVPPLLLRNCSTTLADPITKIFNRSLSEKTFPALWKQACIVPIHKSGNCSSVSNYRGVSILCCMSKIFEKMVH
SILYNVAVPIISNTQHGFMRRRSTTSNLMSYVATLSRELEHRRQVDSVYIDFAKAFDTVPHVTIVNKMKHIGFPDWIIDW
LRSYLSDRSAYVVINSARSRSFAITSGVPQGSVLGPLLFNIFVNDLSLLLSSFVLSFADDMKMYRTIFSQLDCVALQEDV
NTLLIWCGDNGMRVNGTKCKVISFSRCSDKTVFEYSIDSVLLQRVTSICDLGVIIDEKLKFNEHIGVTAAKAFSALGFIR
RHAADFTDIYALKILYCSLVRSILEYAAPVWCPYYSTLVLKIERVQRRFIRFALRNLPWNDPVHLPPYPDRCRLIGLETL
SQRRVSMQCVFIFDIIQGNIDSPVLLEQIPLYVPPRQLRYSSMLAIPHHRTNYGHFNALDFCLREFNRFSDSFDFNVSKN
VFVNRIRDRI
>Q_gag#LINE/CR1 243-1376 gi|11359828|pir||T43019 probable DNA-binding protein - African malaria mosquito retrotransposon Q retrotransposon Q (fragment) [Anopheles genus]
MAAICFSCAEPLEATGCIISCAYCDATFHRGCCKLPPELIDAVLSNVDLHWSCIGCTNMLKNPRCRSVKEIGAQVGFQAA
LNSAVAAIGKLVEPIVAEVRSGFTLLQTASTPHNRNSDPRPATGRKRRRIIEDSASPGVNKIVNSRGNTLCAASSPNAYT
NTTIAVQPAPTQPHELVGTDPLSSPLQAAPREPFTDRIWIRLSAYQRPSLWNKWSLSVKRRLATDDVIAYCLLRRGVSVD
SMNWLSFKVRVPAILRDAALTPSTWPVGIGVREFFQSRQHDHQTSSPIATRNRFTTRTPATSTEHRYTTRTPTTTHRLAA
RTSTPPDPETTSSQQCHPPVNDTLEAPNSTLVSGPPQNHRASSPHLHQSTIDRFFLN
>DongAa_pol#LINE/Dong-R4 189-3851 [Aedes aegypti]
MKANPAMETRSMRNRRMRSPEEGAPTGAGPGTGDRASGQRLEEDNVQERPSSQRAQPVPRTRNRNGSSRNHQGHAAPTDV
AVADRRQSLTLAGGRRQRIMWTREMNMYVIRCYYVCTRMETDMSGRSGMLEMFNERFPRFARQLDLNKLYTRQRAIMSHN
MLTAAEVEYIKLEVQREIGEEGTRSSDTSRRSSVGLDAPITSESRDSPAPTAPGPTADMQRQQLRDELALHMGTAVTQFR
GTDPMSRHRIPKLRYSYRLTSAVSILNQDILPQYLEAVENLEDLQFIVYSAAIAVVKTLGLRTRPQGEDGTRPNAQKPVW
MRRLESRIATLRSKVGRLTQYKQGNRSTRLVRHVAEIVRPAELRDLREVDITEILDTHVQRLSALAKRLRRYGECSKRKE
QNRMFNINEREFYNRIRNDKVDFGEGLPEIGDVTQFWANLWENPTEHDGDGMWLAEEERQCDGIGDMTAVVVTAQDIREA
TRYTRNWAAPGPDFVHNFWYKKLTTIHGRMAECFNTVLGDPTQLPEFITRGVTFLLPKDQHTADPAKYRPITCLSSLYKV
LSSVIARRVQAHCDANNVMTEEQKGCRRNTQGCKDQVIVDAVIVGQATQKQRNLSMAYIDYKKAYDSVPHSYLLKVLQLY
KVDGNVIRLMQHAMGMWSTSLHITDGTAVLRSRTLSIRRGIFQGDTFSPLWFCLAMNPLSKALNQCNYGYQLKSGERSTR
VTHTFYMDDLKLFAESVQRLHQLLQLVTTFSNDIRMEFGIDKCRSIHLRRGQVMDASCFRVNEQEEIRNMVEGETYKYLG
FLQLRGIRHTMIKKELQEKFLSRVNCILKSFLSAGNKVKAINTFAVPLLTYSFGVVKWTKTDLEAIERAVRVAFTKHRMR
HPKSSIERVTLPRAAGGRGVTDIQALCVSQIQQLRAYFVESQNRHEIYRTVCEADHGFSALHLAQEDYQLNCDIKTVDEM
IAMWKQKELHGTHPHQLELEHIDKVASNTWLVRGDLFSETEGFMVAIQDRVIATKNYRHYILHEDVEDRCRKCNSVGETI
EHVVAGCSVLAGSAYLDRHNEVAKIVHQQLALKHNLVDRFVPYYKYLPDPVLENSCIKLYWDREIITDVLIRANRPDIVV
YDKRMKRVTLIDIAVPLDHNVQSTFSNKIAKYHDLAEELKQMWHLEDVRIVPVVLSATGIVPKSLLRSLDELELKKDLHS
IQKAVILGTCSIVRRFLNHHN
>Cre-2_BM_pol#LINE/CRE-II 496-3333 [Bombyx mori]
MNSPTRATCPHCPGSTRLFVVPRGLNVHISHMHKDSQIQPSILPRVPCAVTADAHSQTQSVIHTLDDLASYKNKIPVLKH
IPKGARNLVAGKLRVIMDGCINNNGVADWVSLLSFSYTTLRIPDRGDPRSLTAKVKENANNNSPYFLEDFKHKPRSIVKR
IEAKVHEGDLRGAVRLLVSEDSLAPFNDETLSALRDKHPTPFRPLSLPPAPDSSCPFLTVNSEDVADAISSFYSGSAPGL
DGLRPNHLKELISPSAGENGVRLLHSITDLCNFILRGTVNVQVCPYLYGGSLCALTKKDGGVRPIAVGSVLRRLAAKLGC
RSVRNEMASYLQPHQLGFGTALGCEAAIHATRAFAMSRESCNSAIVKLDIRNAFNSLERDIILNEIKEKIPALYPFLYQC
YSSSSKLFFMESSIDSEVGAQQGDPLGPLIFSLAIHSIIKTVKSPLNLWYLDDGTIGGPPDSVLDDIRLLFPKLRDVGLE
VNTGKCEVYFSTEVSASVVNDFQELVPGIKVLNKSNFILLGTPIFQDGVPSSLEIKRQLLSSLRGNLLSLSSHVALVLLR
CCFSMPRLTYLVRTCPTWLFTQDVAQLDALLRDTLEAILNVSLDDRQWCQAVLPIRHGGLGVRQMERTGLAAFLASCYGV
VDFVAKLLGTNGDGSTIPFASEALAAWGLLCPNEALPVNRSSQRCWDDVLCKLTLSTLLGDAAGVELARLKAVSSPESGA
WLQALPSPQLGTLLDNNSLRVATALRLGCSICEPHRCVCGSMVDAAGLHGLSCVRSAGRFPRHHALNDIIRRALVSANIP
CVLEPPGLSRSDGKRPDGLTLIPWEKGRCLLWDATCSCTYAACHLSGTRQCAGFAAEASAKTKHAKYDALKSTYLFVPVA
VETTGVWSSEAKKFIAAIGHRLRGQGHDPRSGSYLVQRLSIAIQRGNAASVMGTFGPGAIQSGLFD
>DongAG_pol#LINE/Dong-R4 Previously named Dong_Ag_pol. This is  gi|34392535|dbj|BAC82595.1| reverse transcriptase [Anopheles gambiae]
METRSMRKRTTRLPEEGAPTGAGPGTGDRASIQRLEDEMVQERSFSQRALPVPRTQNRNGSPINHQGNAASANVAVADRQ
QSLILAGGRRQRIMWTREMNHYVIRCYYVYTRMETDMPGRVKMLGMFNDRFPRFAHQLDLSKLYIRQRAIILPEELEFIK
LEVRREFGEEEAGWRESSRISARLNTIDQNTSRASEDRDLDEPTAPGLSVDIQHQMATAVTQFHGTDPLSRHRLPKLHYS
YRLKTAVSIINQDVLPQYLDSVGSIEDLQLIVYSAAVAVVRTLWLRTYPQGDSEGRPCSKAEKPAWMRRLENRINATRTK
IGRMQEYQRGNSSMKVVRQIAEMVKPKELRDLTDANITEVLDIHLQRLSALAKRLRRYAECSKRKEQNRMFNINEREFYN
WIRNDKPNFREGLPDIGDFTQFWANLCEKPVQHNSEGMRLAEDERFSDGIEDMPVLVVNAQDIREATQYTRNGAAPGPDF
VYNFWYKKLITIHEQIAACFNTVLEDSRKLPKFITGGVTYFLPKDQNTKNPAKYRPLTCLSNLNKVLSSVITQKVKDHCD
TNNVMTEEQTGRRKNTQGCKDQVIIDAVIVGQAAKKQRNLDMAYIDYKKAYDSVPHSYLLKVLQLYKVDGNVIKLMQHAM
GMWSTSLHVTDGKVVLRSRSLNIRRGIFQGDTFSTLWFCLAMNPLSRTLNQQCNFGYLLKSEEISTRITHTFFMDDLKLF
AETVQKMHHLLKNVQGFSNDIKMEFGIGKCRSIHLHRGQVLDADSFRANEQEEIRHMVQGETYKFLGFLQLRGIHYAVIK
KELQDKFLHRVSCILKSFLSVGNKVKAINTFAVALLTYSFGVMKWSNTDLEALERTIRVVSTKHQMRHPKASVERVILPR
KIGGVGIIDIQALCISQIHQLRSYFVESQNRHELYRTVYKADHGLSALHLAQQDYQLNCNIKTVDGKGATWKQKELHGTH
THQLNLEHIDKVSSSTWLVRCDLFCETEGFMVAIQDRVIATWNYRRCILREDVEDRCRKCNSGGESIEHVIAGCPVLAGS
AYLDRHNDVAKIVHQQLALRHKLVERFLPCYRYLPDPVQENDCIKLYWDREIITDILIRANRPDILVYEKRKKRATIDID
IAVTLDHNVQTTFSTKVMKYHDLAEELKQTWYLEDIRIVPVIISATGIVPMALLRSLDELELQRELPRIQKAVILRTCST
LRRFLNPYN
>TRE3B_pol#LINE/DRE 1341-5171 [Dictyostelium discoideum]
GMSSKINFITWNCRGFTENPNNQHNSYQKAVDTLQLLISKLPPRPTISILTELNSSPLQLKHDFPDHIISVTKRGNGVII
INHNPNTLKLKHISTIDGRAILADVIFPNQLPIGILGIYAPASNNTIKKNSYATSLQTLLHNHSTNPIPNQSQHVSIIAG
DFNCIHNDNSLLDDIIQSYTYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRIDPENIYTQVHQIPSSLSDHNPISTTIS
SPFQINKHKKRWILSPGTANDHEAINIINHLITNHNNTSINQFTNWSKVKSKIIKTLKNYQYNKDKQTQRAKQILLEKAA
KFKHLEEQCIAEYNIICNKNKLHQNHTNILKKHINGEIPSKYLSAILNKRSKDAKIESIQYGNIITSDPDQIENAFVEFY
TNLYSLQICCPITHQLMLNTWPIIKNEYWNGLDSPFIQDEVEAAIKTCNPNKSPGPDGVTNAFYINHLNQVKPILTTLFN
DILENPHHITTEFTEGLIHTIYKKGNPLLISNRRPITLLNTDYKILSKVINARLLRILPFIINNNQTGFVPHRFIIDNII
NINELINYLKSKNLPGIITLFDFFKAFDSISHDSIKRTLIHIGIPIKLINLIHKLLSDSQAKISINGKTTRKFDIKRGVK
QGDPISATLFVIVIEILARTINADNSIIGLPISPNPQIKIKFTQFADDSTTYNINYEQQQQSIKHFDNFCASTSSSLNFD
KSAIIEINPHKITDKHIINNIPQSKRIPITKKDQSERVLGYFFNHNGLHRKLPETMKTLIKSLVLWKTSGTTLKTKTTII
NTYSLSPITYLSYLEEFTKDEEIQINKLISWFMNSPANSESPTLNTNSIENNTSTIHSRAKIPLMCYDRSLKPLKEGGWG
MWNIQLRQVAQKIWIYNRFLQMHKSANNSIYMISWMDQIINKSISSPYLIKIKKEWENYATQIGHLKDKVQILQPILTKN
QPSQTLNTNNISLPPTLKEIYSTILNNHQCKSKDYIGKKYSDLLLTSHQQSIQLLWKYTYDQLFVKIQKLKDPKGRDTMQ
RFHARCLPINHLHNKVCPICNNEMNNDPYGHLFFNCQHTINFINHDKLKYFIYKNCNGNKNWSLTKNQTTKLYTLIYKPQ
TNNKAFKPDPTININFHFAENAQYKKYRFNWNYINTNLDLVRTHAYWNIISLVIHQIWIWLCKSLFDINITQSIDNWNNQ
INNTTLDYDILKSKWHKLIRLEYSRTLSNFNQYSIKNNLTKTQKETQWSETIKKFKKEWSINTNEPIPTITPPINY
>DRE_gag#LINE/DRE 391-1725 [Dictyostelium discoideum]
MKITNNTTNIKQHKCLQKISEIVDKTQLKKKQFKYVININHEPDDKIKKDLEKSLDKKDVLIKSNNTFKILTDSISTVIY
FVNMFDAELKGQFITTLRPKNMYTDFDWYKSLTEIEWVIENEGCKLIKSEIKGETLIIKTVKRVVEEYDTIIELDNLTLI
GHSNKGWRDQTSLPENQEENKNKKQSDEQQPKSTSEQIPKQGKRTIIIPPITSSSNDKTFMALDDTAQKVIDASLENVDE
LTRIENEINTQSIKNQEIKTKSEKPIEPPSPYNTPIKQHGETKRLTTEEKLREVNDIFDFTSPNTDAIRKIEFPLSIPSN
QWFFSSPIKHIMSFSPTYGTPSKIIDSPSKLLNTPKNKQQDKTNRTNKTPVKPKLGEYGQKSIKTKMDEDIDNFNKEILK
QISKSKNPTNTQDQQHNEQSKDQLEDKINQKLQKVDKNLPQIKL
>CR1-46_HM_gag#LINE/CR1? 45-1417 via tfasty with CR1-43_HM_gag, 2 frameshifts and 5 stopcodons  [Hydra magnipapillata]
MAPREISELFLFLNSNKNLVENYVSNVEEICSHPKDVIINEFSKLQEEDIFSLRSFLFTEILESFELEQFSSLNISLDAD
DPLKKNLRKRYKVSTCLDDIYLLSISLAEKQLHKEFTKLINNSKIVSEKITTNVTDINILSNLKELNDRLKTLQSDNVKI
REDLRILQGKYDELQESNSEIIKNQQQLSLNYATNSSFIQKPIENSIVTNSINFRSLTQNHTQRKTNPSFTVEDKLKKNx
KQVKLMHKKLKYHPKWQTIIPxYQHPHxYNSLQKNxTxKYDRDCLEERKNYYLKPGVSTSKKEPIFGNKIAKNRNSIAGS
RIVRESYIFVGGVCNSISEALLFNYIKKEIGVEPIAVTLNRENKYNRSFKVTIKSHEKHIVLKPEVWDHNIIVKQFRKSR
ENLGTEMMLQNNNNIPSISQSVTKSQSEDEHQSDVVNQSDVEHQLYAARAMSLNQKS
>CR1-9_BF_pol#LINE/CR1-Zenon 457-3609  [Branchiostoma floridae]
MFLNRILSYTSSTIRALRTNIKPTPLVKRAIFDCGINKYHRRPRGCRGGKNLTRHNPTLTDTSIAPPATYEVENRDRWMN
LTNNDKCPPDRHKDKKLELWYTNIRGLRAKREHLSVRLAESYTKPDIIMVTESKLDSSILDNSPDINIDGYLIERKDRNT
GKDWGGCLIYYKSGIGLHRRHDLEPPEHELMICTIKLHTGTLLLSLLYRPPGQRVIDCAPIDWYTENLDHLRTKTKAMGT
ILAGDYNAHHKEWLLSKKTDPPGRHTLTLCTTHGLTQLVKGATHQKGNRLDLIMIDTPNICSDVHIEPEIGKSDHFLLTT
SIPCSPVLEKTTPRKIWIYKKADWHALREELAQTNWDDLLDPENPERSCTNVTKAIQEAMKHHIPRRELKTFDGKPEWYN
GACERALQKKLKSWHQYKANETQETRTRYNKARNDYTYVTRKAMKAHKKRVKAKMTTGLKNGSKSWWWTAKRLMGQGGQC
DIPLLTSGNQTYIHPEEKAECFASIFADKSTISQEENEKEVPLVTTRTTSSLEEVTFCPDQVHEELSTLDTNKATGPDSI
PARVLKQAAPELAGPLARLFQLLLDKHHMPKQWKIANVIPVHKKNNKQDPNNYRPISLLSIISKVMEALINKALWSHINK
NRLISNNQFGFRAGHSTTDALTFVSQLLHDTKDRRQESRLICLDISRAFDRVWHRGLIAKLNAIGVKGSLLKWIEDYLSN
RELKVVISGKTSTSKVINAGVPQGSILGPLLFLIFIDDITEKIRNTAMLYADDTSLMNIIRKRQERTLAAQSLNTDLMGI
QNWAKDWNVLFGATKCKSMIVSNLKDVEGNHPDLTFMDTILTEVEEVDLLGLTIRRNLTWSHHIDKMSTDAGKRLGLLRR
VSPYLSPEQRATIYKCMVRSSMEYASTVWMGASATSLSSLDAIQRRATKIIDMPQDSLDSIQIQPLEQRRNVGALSLLHR
MYHQDAPTLLNNLLPEPYVHRRETRLSTSQHSAALEPVKSTSSCHKRTFLPATVKLWNCLPQDIVNIRDLKNFKRIVNAH
LTDIRQRDAL
>CR1-4_BF_gag#LINE/CR1-Zenon 234-935  [Branchiostoma floridae]
MASTQRNTRASSQTQAKSVELREKLSADNKLLLDAIEATLLLPLKSEIQELKSQLAGVADEQREIKSSVAQVKSQINTTD
AAVRETSARLNDLEQYSRRNCLLLHGAVSPTSDTVQFILDTAKNTLGIDLSEGDIDRAHPLPRRKGSDGQRPPPIVIKFV
SYTARHKFFSAKSKLKGSKLFVTEQLTKENALLLRATREKMGNGWSMDGRIYCLHDSVKKRVANRTDLDNMEL
>CR1-29_BF_pol#LINE/CR1-Zenon 3-1622 fragment [Branchiostoma floridae]
LPGRDDSPPTFLPPVSPETLLESLHVTVDEVRQQLLTLKVGKSCGPDDITPNLLRRVADPISAPLTKLFNMSLSRGQVPS
MWKDANVTPIHKGGSRHVPNNYRPISLLNIIPKVLENLINKRLVEHIRPMLTQHQSGFRSKDNTTLQLLRLVDEWTKAMD
RGEVVGVAFLDLRKAFDKVWHKGLLAKLEGYGIRGPVLEWFASYLTDRRQRVVVNGATSDWKTPLAGVPQGSVLGPTLFI
LYINDLPYRCTACAANLFADDTSVSTSHRSISIVTDSLNKDLATVSDWLLCWKLEANGDKCKVMYLTSRPLPRTIPPVIL
AGTTLQIVYSFKHLGVTMTHKLTWSLHVEATTNKARRTAGMLCSLRKKIPKTTLLQLYKTLTRPVLEYADIVWSGLTKRD
EKLIESVQYRVARVISGHHGFPYPSYRTVYAHLGLPSLTFRRKFHTLTALFKLRNGHCPPHLCNLVPTTRSSAIQSRYPL
RNGNNLSIPLPKSTRTQKTFFHRATQLWNNLTPETQTAPTISSFKAKAWLSLGDPFSVN
>CR1-54_BF_pol#LINE/CR1-Zenon 1-1944 fragment [Branchiostoma floridae]
NATLPDFNSLTDARLSCVFTTPEEVELYIRSLDTSKANGYDNIDNYFLKLITPLISDKVAYVFNLSLSYGIFPMIWKRAN
VVPIFKKGDPHDKCNYRPVSLLPNLSKVLEKIVYKHIYNHLFSNDLIYSLQSGFVHGDSTVCQLVYICHTILKAFEEGKE
VRSVFLDFSRAFDKVWHSGLIFKLQQYGIDGPLLNWIYSYLCERSQRVVIDGQSSPWSKIGAGVPQGSVLGPLLFIIYIN
DIVNNLSSLPFLFADDSSLLEVVEDPTTSAYRLNSDLSTILSWSHKWLMELNPLKTEEMVFSAKRSPVNHPPLYLGTSEI
KRVLFHKHIGVVLTSNLSWHNHIIQMLAKISKQVNVFRGLKFKLTRKVLETIYKSFIRPCLEYADAVWDGCTAEDSNLIE
RIQYVCSLIVSGAVKGSSYISVCQELGWESLSSRRHIHRLSLFYKIVHGQTRRYLIDLIPPEISQTTSYNLRNRSNFRLS
IQSTDRFGKSFVPHCLNLWNDLDLVIRSSRYSLFRKYLIKSVRPIRPPHYDCGPRYTCALLVRLRIGTCALNQSLFIRGL
SPSASCRCGFRCESVLHFMLYCPLYIHQRSEFFGNLADLLGHRVNLNNMSDNVKLHFILRGSALLPSVYNFKTMLLTQTY
IEDTKRF
>CR1-33_BF_pol#LINE/CR1-Zenon 1-2124 fragment [Branchiostoma floridae]
VGDRIKTPEDSKLLWTVLNKVTGKGRTGIPALLSQGETLDKDIDKAELLNNIFVQITKESNHPDYTKRLPMFTNNELSSI
QLSVEEVYNVLSDLRINKAPGPDCIPNRLLKEAAPVISSSLCELFNFSLATGRLPAEWKQSNISPVHKKGDKTDPYNYRP
IALLPTVVKVLERLVHNRLYTYLMDNGLLNPKQSGFKKGDGTVLQLLRLLDDWAKSIDDPNVACTAAVFLDVRRAFDSVW
HDGLIYKLSRYGVQGPLSNWFSDYLSGRKQRVIINGVGSSWGSTTAGVPQGSILGPLLFLIYLNDIQELPCKSSINCFAD
DTSLYNSGRTAFEVANTTNADLRLVSNWFHDWGLQLHPDKCKVMCIKALQSKVKLPPIYLAGELVEEVTCYTHLGLTLHF
SLRWKEHAEVVSSKSKKVLGLLSKLQSKLPREAMETAYNTLVRTKLEYASILLSNIGTTASKSLEQVQYHAGRLVSGAMV
RTPYAKLLDELEWDTLAARRDHNRLLIMYKLTSGSVPPHLQPLIPTTRNSQRQLNVRLRNDTHLHVPHSRTNTYKNSFVP
YTTRLWNSLPKEVKEATSFNLFKRKCRNHMLSARHHQKYRRFGERRSNILATRLRLGWCQLNSTLAKFTITTRRCACGAT
SETVAHFLLHCSLYTAARQSLTTAVHRLVERPLSTTLLLNGSPGHDDNTNRSLSTAFHTYILSTRRF
>Jockey_Ele3_pol#LINE/Jockey 1506-4181  [Aedes aegypti]
MGDLTKLNIVNWNSRSILPKRIEFFDFLNQHQIDVATVTETWLSPKNSFHHPEYHCIRSDRRSNNNERGGGVLIAIKKGI
KFSQLDLTTGAIETVGIEIQNAAQPIHIIAAYFPGGHRGTSWNTFRRDIDNLVRRPEPFFVAGDFNARHRQWNCLRANKA
GNILASRASSSDFFIHAPSAFTYNPQNGRRPSTLDLVLSNNLVNMSTVSVVNDLSSDHLPGRFDIDLIAPVITVTSTSRC
YARANWQLYKRLVNEKIDLTAGVINNLNCSAAIDNSILLLTTTLKEAEAIAVPNVPTKMYKDVKVSNSTRQLIQLRNVRR
RQWIRTRDPLMLMIVESLNNRIREECMSERNRQFSRTISNLENGAKDVWKISKALRKTVKYSPPLHQIDTNTLISSPSEK
ANLLAECFASTHRNPLPSDDQTAIAVEESCTLIANTATAVNDVPMIRPREIEKIIKSMKQKKAPGKDKIRNALLKNLPRK
GLVMLTKIINACLRNSYFPKVWKHAVVTAIPKPGKDITLPANYRPISLLPSMSKILERVILSRIEGHLEGHNIIPAQQFG
FKRGHSTSHQLVRLTQFIKTAFTSGKSAGMVLLDVEKAYDSVWQDAILHKMRTANFPLYILKLLQSFLKERSFQVIVKGE
LSHVQQIPYGVPQGAVLSPILYNIFTSDMVMVNGVEYFLFADDTGFVAVDKKAEVVIEKLQTAQKAIEDYQRQWRIRINP
SKTQAIFFTRRRNQRFLPQTQLTAMHHTVPWSDEAKYLGLVMDKKLKFDKHIASILGKCDKLIKMLYPLICRRSRLNSVN
KILIYKMIFRPIITYGFPAWHSCAQSRRMKLQVKQNKILKMMLDLPFNFSSDELQEVSHTEHLGSWTTKLLQKFWTGCTI
SENDLIVNLVP
>Jockey-15_DBp_pol#LINE/Jockey 508-3267  [Drosophila bipectinata]
ISSPAPQQRFSLTMNNLRILIWNVNGISGKAREVELFAHNNRIDIILLSEIRLNRGEVVKXYGYSFYPAYKPSRHNHGVG
GSAVLVRSSLSHFPQSVIETQNIQMSSIKVATGMGFMDVRAIYCPPRHRIEERHFTDILASCGQRYLIGGDWNARHWMWG
DTYNSPRGRELVESISARVAKILATGSPTRYPYVSGHTATCIDFALYHGILDSQINISQSWDLDSDHIALVVNLLTNGVN
ISPSPRLVTKRTDLTAFKQHLESSFQLNSTLSSKEDIGNAVEVXTENIHRAATASTPPDPDHRTISYGIVPTREARELIK
RKRRLRRRAIRSQDPVDRNLWNRAAQQLRTLLSELRSDFFEHKLSSMDYTIDTNYSLWKCTKSLKRQPFRQVPIRCPDGE
FAKNELEQANAFGQHLEDRFTPYDFATIEQVQETHQSLETPLQMSXPIXPIRIEEISEVIESLPXXKAPGIDRICNTTLK
ALPTRAILYIALIXNAIIRIQVFPKQWKXAAIQMIHKPGKPEIDPESYRPIXLLPSLSKVWEKLIANRITVIISQSSILP
DHQFGFRGGHGTVEQVHRLVKHILQAFDALEYSNAVFIDMQQAFDKVWHDGLLCKIKNLLPAPFYGXFKSYLEKREFKVK
VRNTYSNNYLMRAGVXXGSVLGPLLYSLYTADIPSPNNQHMIAPSKAXIATYADDIAVIYNSSCRHEAANGLQLYLESLV
AWCKRWNLKINPLKTTNTCFTLKRKIMNTPQIQLEGVTLEQPLQAKYLGITLDKRLTFGPHLKATARKCKLRTQQLRWLI
NRKSKLPLRCKRAVYAHCILPIWLYGIQIWGIAAKSNYKRIQVLQNRILRSITDCPWYVRGTTLHKDLKLHTVEDQIGRH
TSRYSERLLRHRSLLARNLLPARPLRRLKRQGFAKTIRSQ
>L1BM_pol#LINE/Jockey 564-3185 via tfasty with BMC1_pol, 7 frameshifts and 4 stopcodons. [Bombyx mori]
MAQKGREKPYSLTPIILCVYxVGIQGVILQFNSLAFYNANGLARQRIQIFEFLRDNLVDILLVQETCLKPSRRDPKVANY
VMVRNDRLTASKGGTAIYYRRALHVVPLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIESLFGMGDSVI
LAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIVGPPTPTCYSYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDH
RPVVMQLGRPHNPVTVTRTMVDWNKLGTCLADAAPPILPYGPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFH
RIRLSPDLRNLLRVRNAAIWAYDRLPTHSNRIQMRRLQREVHSRLSDARNDNWHSYLEQLAPSHQAYWRLARTLKSETTA
TMPPLLRPSGQPPAFDDDYKAELLAxLLQEQCTTSPRHADPEHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQP
RKAPGSDGIHNRALKILPVQLIAMLATILNAAMTHCIFPAVWKEADGIGIHKPGKPRNETSSYRPISLLSTIGKIYERLL
RKRLWDFVSANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIRPAPLLRHREAFDKVWHNGLIYKLYNMGVPDR
LVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRR
LQIAVATMGQWFRKWRIDIKPTKSAAVLFKRGRPPNITSSIPTPxxARKYSAVSPITLFGQPIPWVSKVKYLGVTLDRGM
TFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAHSARTHLKSLQVIQSRFC
>TAHRE_pol#LINE/Jockey 3377-6697 [Drosophila melanogaster]
NTTMTFNLNNGQASNTLKIGYWNSCGITNKTNELEAYIKKEGIQIMLVTETRLERNSNALNIKGFHTYLAQNPTSHRKGG
TATIVSQNIRHACLNPIETDFMQSAPIALIPSSRIRADMTIVAPIYCPPVYKWTTEQFSKLFNHFEMLLDGKSKFILGGD
WNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDFAICKGFHTQKLKTYSTDELSSDHLPI
QIVLDPDDSDWQHNKTNNAIIQKRTDLTKFKKNLENKILLNTEIRTGQDIDDCIDILINNIKSAANEATPPNRPQNNRTY
NSSRRSTNLRLDEATKRLLEEKKELNRIFRAVGTDEARRWFKNVQNRLSKEIRKLKQKLLNRNLQDIDTTDRYRTQKLWK
TTNTIKMQPRPCWPIKKDNDDSRQRTDYPWTRTLDEKAEAFASHLESRFRTNQINDAKDREFVRNELNKFKSLNASGESG
NSNFKPVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFA
LNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAF
DRVWHDGLLYKLSRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMR
NISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSLKKEQTNIYTPPLI
NGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKNAKILLWKQIVSPIWHYAIAIWGSLV
SDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKPNRLELSK
NRYVKQLSKYILPLQQHRPKPPAEPIYSSIHNYTKKEEAEIVAKMRTKFRQTLPTLLRIADQELEIRQSIAEEKRKEKEK
SERRKALEKGPPDRWCELQINKYSKLYRKGLRAREEILELMLGQPATVIKIVIPDYEPEDDLTKKS
>Outcast-1_DAn_pol#LINE/Jockey 1878-5459 84.2% sim to Outcast-1_DWi_pol, SW:3608, [Drosophila ananassae]
IKILQYNIQSLTSQNNKQLLELFLINNNIDIAILSEIWVINNSMCNLANYNFICKPRCDGYGGVGIYVRKCIKYKILTFD
TNNVETIAITTKNLKRNLNIFSVYCPPNTNVNDFKAGCKDILSTAARLKDPSLVGGDLNAKSPIWGSSTQDSKGQALEQI
LLSTGFCCINNGSHTYSPNPTYSSVPDVTFINKNTFSANWSASNSKISNSNHFPITIEISNWSASTNVLRTIQPKVLEDF
SKINITSIDNLCSLTKDIMEKNTILLDERNKYIPKKYWDETCEKLFRLRNASRQKYYKTKLISDAELFRKYNKKLNNYFY
KVRKINMNMLSDSLSNPQSSKEFWQKIKSLKAYKQVKTTSKLFDDEDHLTFLQHVSTSPDTTGCIYYDFPQIELETINKI
YFSPCDVLCFLKSRNPHSSKGLDKISYNMLLSLPPEQVHKFTSMLNDIFNEGKIPEVWRRIKIVPVPKKNLDSSVITNNR
PICLLSVVFKCMESLVKNKLEEHIAINSLLPDRSYAFRRNHSTAHCINDVINNVANLKAKGFHVVAAVLDLSKAFDCVNI
SILCKVLCDLGFNHRYINFIIEFLKKRILVMGKTEVTVSKGVSQGSCLSPILFNLYTAVLHSISDHQSLIFQYADDFFLI
SYSKNFSDARNILEQKVNNFNNICDTINLTFNPLKSSVIHFNNKRRTLGIMCNNLLIKEVDHVCYLGRTICTNNSTIKHI
RHTLSKANQTNMFLNMLSGCRFGIHPGKAINLFKAFVRPKYEYACSSFANISKTVSSAVQVHANLYLRKSLGLMKSTPVN
IIYHMAGELPPAYRMKFATAKELAKIFAFNLPAASLLQNNFSAKNTSYIKTYLEFKDIYDSITHVDSFTHKPRMLTFDID
FFKGVCSNKNSSNPDLVNNLMKEKLRILSDKSYDVIFTDGSVKDNFTGSAFYHINSNTTKSFYMNKKLSSLTAELTALEK
AIEFAIEQQLVKVAILTDSLGALQTLKNCHSSNRIGSEILKKVNSNQSMLYLQLHHVPSHVNIKGNEIADNAAKNANSSG
TLINFKYEINDAINHIYNIIKIEWEREYNAFCLEKNRGYCTLFPYVTHKPWYSSKHCNLNRLQVKQINRILSGHSFDRYT
LYKLKVYDSPNCDCNLNTIEDISHILLKCTKYNNIRRRFPLLLKYNDIYQFFKQEPIEKYNAITDFIEMAKIDL
>Jockey-11B_DBp_pol#LINE/Jockey 1389-4103  [Drosophila bipectinata]
MQQVGLHVAFWNANGLVNKRLEVEHFIHTRCIDILLISETHFTHKSFLTLHGYDIIHANHPSGRGHGGAAIIIKSSIDYS
EIARIKEEWIQCAKINVSTPGGKIMIGSAYIPPRQRVSDNQFDLLLNDMGDKFILAGDFNAKHPWWGSRVTNPKGSTLFR
CIQRRAFNCHSTGEPTYWPTDPQKRPDLLDFAISHGIHPDSIACSSNADLLSDHSAVELHINTPVEKKVISSRMIRSRTN
IETYTGWLNNALGNTQPDLNTGFDIDNAVVNLTQEMHNAXLVATPRAPCNNKILQRHLHLWSPEVALLLNEKRRLRRXWF
RTRYPSDKTALNRATKRLTKLLQRLRTCAFEEYLRQVEPGDPEHNLWQLTSHIKRPKKRVAQVRKPDGEWCRSDQERADA
FAAHLEDAFTPFNRCSEVDQAETERFLSLPCTDFCQLEPVSEEEVQEEVAGLNTKKSPGADGLEALAIKLLPPLGIQRLT
SIFNACLEIGHFPSDWKKAEVILIPKPGKPEAGLASYRPISLLSVLSKLLERVFLRRFQTVLDEAGLIPDHQFGFRRCHA
TPEQCHRIVQKILNSLEEKKYCCAVFLDVKQAFDRVWHPGLLMKIKRSVPHEHYAFLKSYLNDRSFRVRCGDARSDYRPI
KAGVPQGSVLGPILYTIYTADMPVAEEEGLLAATYADDTAFLTSAIFPEEASASLQRQLDILDPWLRRWNIAVNHEKSAQ
TTFTMRRGDCPGVSLGGTPIPASPTPKYLGMTLDRRLTWRTHLQRKRTQIGIKLRQLNWLIGRRSRLKLRVKLLIYKAIV
KPVWTYGIQLWGTACLSNRRIIQIAQNKALRTLTGAHPFHDNATIHAQLRVPYVSEEVQRFANRYVERLDRHPNPEAINL
LDNSYTTRRLKRTHPLDLCHSGERD
>Jockey-6_DEl_gag#LINE/Jockey 189-1928  [Drosophila elegans]
MPAGTLLKSANSKPVSQSRVQQQQQQDARRLSSLQLSSSSKNNAYLAIVSSETVNNTTTSAMSPPATERARSLSPALFTN
SSCAAPTQSWSSQCPSPLPPIDAPTTSACALTNTVPSITTVVSTTTTTTSTSTNVWPILASRAILASAAELSQSTLVQTG
IDRYVQIKRKLSPQKAKEANLPKLTKTSNNTTKATSENKFAILGELEKDDGQPPQANKIVKPPPMYVRDQNCSDLINKLK
QKIGQNNFYITILKRGNISETKLQITNEANYRSVTNFLDSERVNYYTYQLKSSKGLQVVIKGIESTVPAADIAEGLKENG
FDVKNVMNITNRAKIPQPLFKIELKPDATTLKKNAVHPIYKLQYLLHRRITVEEPHKRNGPVQCTNCQEFGHTKSYCTLR
PVCVACGDLHCIEACTGNKEDPALRKCSNCGGNHTANYRGCPVYKEIKSRLNQRRQQPTSAQQVAQPNLYIPSQTTPGVT
FAAALRYPGLSPTRTAQPEALQPHPPIPKPKYTPLPEQNAQRPTQPYNQQNQTYTPQIQNSIEATLATLTNIMLSMQGTL
QELVRNQNNLMELLIKQKST
>Jockey-6_DAn_pol#LINE/Jockey 2181-4901  [Drosophila ananassae]
MSQIGLSIGVWNADGLANKAIELELFVQSHNIDIMLVSETHFCSRSYYNLHGYDIHQATHPADRKRGGSAIIIKRGIKCY
QSYSLQSTNVQCVSVKVKTDLGEIGIASIYCPPNFQCSADDFEKLFDDLGTNFIIAGDWNAHHRLWGSRNSTSRGRALAD
VVQRSNVQVLATGGPTHYPYSQRTPTAIDFAVYRGIRSECLSITESLELSSDHIPLIIKLRVAAQIIRNRPRILPRNASI
PRFQAAVNRLVNLNLVLNSPEDINDAVEIFARSIHIAAESSTCGQVSSHPNPPQALLKPEVMDLVRXKRSLRRRYMRSQG
LVDKRAYRRAEDELKKLLHRTKREYFDEMLLKADPTKPYGFNLWKSTRNIKRQPLRKIPIKKTDNTWCRSDSEISLAFAD
ELEKRFQPFDLASPEDLEETMAFINAPSPNALPIXHVSPEEVCLHIRKLHVNKAPGFDGIDNRIAKALPKKGILFLVLLF
NXMLRIHHFPSQWKCAVITMIPKPGKPENLVESYRPISLLPTFSKIFERIFLSRIMGVRSVQVAIPDHQFGFRHRHGTPE
QAHRVVNHILKAFENKQYCSAIFLDVKEAFDRVWHLGLLHKLKSLLPTGQFLLLKSYLLDRSFMVEVRGERSSIRLARAG
VPQGSVLGPVLYTLFTSDLPSLVEPGTLLATYADDTAVLVNSSCRVEASRITQEFLDSYGKWANRWNIAINSRKSQHCSF
TLRAKTLPRVELHDVTIPQSPQAQYLGLILDKRLTWKEQTKKITATCRSKLRKLNWLLKPTSKLSLGNKVLLYKSIVLPS
IIYCIQIWGMASDTNVMKVQRTQNRALRMMANAPWYVRNDALANDLHIPSIREQINRHSSRYSDRLLAHPNHLAASLANQ
NNRRRLKRRHPSDLWTRGRNVSRVLKQ
>Jockey-6_DPer_pol#LINE/Jockey 3501-6887  [Drosophila persimilis]
MNTNNNNANHFPHSNHFPPQTLDTTGANLPNSNRLKIAFWNACGIKNKMAELETFMTNGDIQIMMVIETRTKQSADLLKI
PNYISYHTANPINHKKGGVVVYVKENVRHAALEPISTDFLQCTPIVIIPINNKRRNMIVVAPTYCPPNFNWTENHFRSLL
LHFDNILGGTSGFICCGDWNAKHPWWGNPRSCRRGRALMQAVSSGARYNILATGGATHYPYDSRKRPSAIDFAVCGGITV
NRMKIHSCSSLDSDHLPITIEMCTNGADTFTQSSIGRRLITKKTNINRVKEHLEQTINLNTEIHSGLDIDDAVKILTTNI
HDAIKLATKNVNSNQRLRSGNSNSQRRMDKARYKLDDETKALLQIKNELNLRFKIFHTEEAKTLYKAAQNTLRKKLQKLK
TNNINQQFEGINTQDRYKMAKLWKVTNTIKRQPQPNWPICTQTGNSNQRPVWTKSNEEKAEVFVSHFEQRFKPRHTSSEK
ERETTQKDLDIEKQKLTDAATKTQTRPLRPFTLPELTTEIKNLILNKSPGKDRIDNVLIKALPKKALLYILLIFNSMLRL
GHFPQAWKHATITLLLKPNKPAQSVTSYRPISLLSGLAKTFEKLFIKRLFDFEDFSRALPTHQFGFRKEHATEQQLARVT
QFIMGAFEEKQYCSAVFIDISEAFDRVWHTGLLYKLSKLVSLQAFKLLESYLNERTFEVITNNGITSRIGKIKAGVPQGS
NLGPLLYSIYSSDVPLPNCLNGYHPTSIPVLREKNRMLATYADDTIIMSRADFPLTAAKMNEQYLNKFSVWAKKWEMGIN
EKKTAHVFFTLNKLSKTQQESTPKLNGQRIPNKFKQMYLGVTLDRKLSLNHHVKAIINKTRTASIKLDWIIGCKSRLAKE
CKVTILKQLIMPIWFYAFPVWGALASDSLVKKIQTLQNKLVRRAVRATIYTRNDNIRSVYNIKTVEEVYEKASGRLANSL
VDHSNSEVARLLTNPHVPNRLKSSRHRYDNQLRKFILPRCNGQRQEQPNPDLDPTRYYSEAERKVIAEKYVPILRKGLPT
LLRLENEEQERLEKAKMDNREAERKKKPYKHPDRFCELQINVYRKMYAQGKFTRETILERIRGQPLGIQRIIVPDHRGDV
EEGVLQPNG
>Jockey-11_DBp_pol#LINE/Jockey 920-3526  [Drosophila bipectinata]
APSSLKYAANRPAVAFWNANGLVQNRLEVEHFIAETHFTHKPFLKLHGYDVIHADHPSGRGHGGAAIIVKASIDYNDIAI
LKDTQFDLLLSDMGDKFIVAGDFNAKXPWWGSRVSNPKGTALFKCIQRRAYNCHSTGEPTYWPTDPQRLPDLLDFAISHG
IHPDSIACSANKDLFSDHSAVELHINTPVEKKVTRLRMIRPRTSIESYSEWMENALESAQPDLSTGAGIDQAVENLTQEM
HNAALIATPRAPCNNRKLQRHLHLWSPEVAALLNEKRRRRRIWFQTRYPSDKTAFNRATKKLKKLLQRLRTCAFEEYLRQ
VEPGDPQHNLWNLTRHLKRPKQRVAQIRKSDGGWCRSDQERADAFAAHLEAAFKPFNMCTEEDRAETEFVLALPPTDLSQ
MEPVSEEEVKEEVSGLNAKKSPGADGIEALAVKLLPPSGIRRLTRIYNACLESGHFPTCWKQAEVILIPKPGKPETNLAS
YRPISLLSVISKILERVFLRRLQTVLDDAGLIPDHQFGFRRSHSTPEQCHRIVAKILDSLERKHYCCAVFLDVKQAFDRV
WHPGLKAKLKRNLPQQYYDFLNSYLTDRKFRVRSGNATSEYRPIEAGVPQGSVLGPILYTMYTADMPVAEEEGLLVATYA
DDTAFLASSILPEEASARLQRQLDILDPWLRRWNIAVNHEKSGQTTFTMRRGDCPGVSLGGTPIPASPTPKYLGMTLDRR
LTWKTHLLRKRTQIRIKLRQLNWLIGRRSRLKQRVKLLIYKAIVKPVWTYGIQLWGTACLSNRRIIQIAQNKALRTLTGA
HPFHDNATIHAQLRVPYVSEEVQRFANRYVERLDRHPNPEAINLLDNSYTTRRLKRTHPLDLCHSGERD
>Jockey-6_DYa_gag#LINE/Jockey 148-1734 via tfasty with Jockey-2_DEu_gag, 2 frameshifts. [Drosophila yakuba]
MSENEARAQRQRQQDERRLSLQRNNAYFSVVSESNRERSITPNPTADPSLLTRDSERSCSPSPSITKTTPMPTARSAHTN
TTKAAQTAKQTATNEKENAKPAIQTGMDRYIQIKRKLSPLKNVNKPKITRANANTTLGEVPNNANRFDILADTIEDLPVE
ADGSDKNKPKPPPIFVREKSSSTFVNNVIKLIGDANFHIIPLVRGNIHETKVQTKSEQHFRALTKYLDEGEKSYYTYQLK
SCKGLQVVLKGIEPDVTPDEIKLALQDKGFTAKSVFNILNKNRQPQPLFKVELAPEAKMPKRNDVHPIYKLQFLLHRRIT
VEEPHKRNNLVQCMNCQEYGHTKSYCKLRPVCVVCGELHDKASCSAPKEDSSRKKCGNCGGNHTANYRGCPVYKDLKSRI
NQRVATVRSQNAPITKKTPKNNPEVFFSTAARSSLGTGFVTKNASYASALRSGLEPPASNAPCSQAKYVDFNSVQDKKPM
EQQQNNFEAMILTLQQSMAEFMAFMRTTMQDLMRNQNMLIQLLVSQQSK
>TART_DV_gag#LINE/Jockey 4848-7958 The most Q-rich region is masked; still Q-rich. [Drosophila virilis]
MQKPTVSKSPPKSPHNASEITANSAVPPHRATEECSISERAKSELSQLQQQLTKNPQKQLSREHRRQQLLRLCEEEERLM
PDVPAQQPTLTLKHKPKLKTVLANSSPPSSAPLRMSLTKSSKAKARKESQSSACREKSPEENTYVNVLESDDESDIAANK
NYDQPQQQTTIAQVHNFNTNTSITSTPKAASHCDPSPNVSAHEVELHNVDNTREASYVNNIDELTDVFDDEDDDDDCYRP
AAVINSSVADMLNRTTTVEHNSTATANRGEILANVKTSDAFAANKINSITFEKIEPIPQTITPTVAKGPKFNCSMLPTTS
LSAKKSLKRKGTLPQQSKQKRAQTLAVQGNSRPGMKIQDFLKSSTRVTKATNKAAIINKYKKSNRNTKKVNPSSSTKLNN
SSMDIDLDSSDISANNIGSDDDIVQIQSNAQEVTNHATKVQQQQQHRQQQQHHQQQQQQQQQQPTKSTKIPTIFLPSISD
IQQIIDMLNNTVGANKYTTKCTQNDGVRVQCSDLLSYNAAIALLGANTEIQMHTHQMRSERGYRVLLKNVHHSTPCEQIR
AELAKHGHTVRFASVIKHRFERRPLNMFEVELAPNGDTNDKVLELKTLGNQHIEVERQLKRDEPVQCHRCQSFGHSKNYC
RRPFACLKCGEQHPTTTCTKPRNTPAKCVNCKADHIASFKGCSVYKMEREKLAANRVRAAIDRxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPQYLAINTSAPSGIKSTKERK
QQQQQLRQQQQKQQQQQQQQHQQLKPNNQLTYSQVASGQANTSLSHNPAMQHLKKYQQQLQLEQQQQQRQQQQQQQQQLQ
PEQQQQLQRQQRLRQQQLPEQQKRQQYQRQQEQQSHEQQQRHQQQSQQQQHRQQADSPLLEALQQNVISINEMSKKIDML
ISLLLTMAASNTNINKQGEQQTIPLTTSTSDTLNNVNKKNNFPNLMSTLISTAQPINNSQSANANCEHIATDSSQYV
>Vingi-4_HR_pol#LINE/Jockey 167-3517 [Helobdella robusta]
MLLLRAGIESNPGPKIWICEICNKRVNKTHYSVRCRTCCKWTHLNNCATNLGSYYLCNNCPHPTTIPSSPVRGAQPNRPI
IRNKTSATPNINPISHSDSKLNILQFNCNGLKNKSAEIAHHLSIHNISIAALQETKLSTRSAVPVFKNYAIYRKDRKSGR
GGGLMMLIHHKIPYTIKQLPDTDTTESQGITIMADGTEINIVNVYIPPQSACPPHFCASIADLLEFPNIILLGDLNAHDG
LWYSGISDARGETLAAEIDDSDCCTLNLDCPTRLPSNGQPTSPDLSIASISLTNCLNWSAVTTLSSDHLPIHISLDLRIT
PTKNPKVTFINLSKANWPGFTAESELAFQNTLFPNTVTAAERAFRRILGNAGDHNIPSGRLINSQPGLSKEVTELIRRRD
ALRLSNPSSDNISTLSNDIHNKINSIKTTKWKDFLSTFNRHTNPKRLWSVIKSLNGRPKLNPNNAINFNGKPISNGLDMV
NLFNKSFTCFSQHKTNKLNRSINREAKRNCLSDHPTFTVDQVSAAIKTAKASKASGPDNITMLHLKNLGPLGLAFLTRIF
NESLRSCCIPDIYKKARIIPLLKPGKSDEDAKSYRPISLLCPAVKILERCLLPFISDHLSPASHQHGFRSGHSTTTAVSL
LSMDVANGFNQKRPAHRTTLVALDLSKAFDMVNHRILISDLLKSSLPSSISRWLSNYLHGRSAVTEFRNQSSKQRNIHTG
VPQGSVLSPALFNYYVSRIPEPPSDIKVISYADDFSVYTTGPDVDILTQRLNNYLPLLINFFSLRDLEISTSKSSITLFT
PHTAQYHYHPQVKVNGQVLPLEHNPKILGLTFDPMLTFTQHHKLSASKATKRNNVLKAISGTTYGQDKETLLQVYKAIGR
STKEYACPAWSSLSSESNLCRLQRAQNAALRIVTGCHKIASEKHLLSECQLLSIKQHTDLLSKQFITKCFDPQHPCHTLL
SAELPPRVMKNTLMSKWGATVRSILHTNSDSASINMAIRNLHGMAAKAAAEAYHAPILLNGWPPPQPQIDSSEESLPRAI
RRTLAQLRSGHSIILGSFREIIDGGTGNMCPHCHTHVDDVAHLFSCPANPTNLKTIDLWQNPTAVADWLRLRLTNG
>Vingi-4_AMi_pol#LINE/Jockey 8-2978 via tfasty with Ingi-1_SPur_pol, 1 frameshift and 1 stopcodon. [Crocodylidae]
HGSFSGPALTVISVNTEGLTGVKQDILSRICTNYNGHVLCLQETHRGPNSNRPLIPGMRLAIERQHEKYSSAIFVKPELI
INTTSMTEQNDIEILTIDMDNISITSVYKPPGKRFAFVSPGNLDHEKARVIIGDFNSHSVTWGYSENNENGNLVEMWAKA
YHLSLIHDSKLPGSLTSSRWRRSYNPDLAFVDSNIEVMCKKDVLEPIPHTQHRPIAINVTAAITPNMVPIRRRFNFKKAD
WRGFSEDLDKKVTHIEPVSDNYDLFVNALRKTSKRYIPRGCRTEYIPGFTPMLAAEYKKYQQMFQRDPFSEDTIAAGTAL
TNKLQEERRRKWKELIEGIDMTHTSRKAWLTIRKLSNDPKKVQQYHNITANQVAHQLLLNGKASNKQPKIRIRRQTDLEE
NHFSTPYTMDELDAGISHLKNGKAAGLDDICTEQIKHFGPATKLWVLRLFNNCSSTLRIPKLWRQARVIALLKPGKDASG
PENFRPVSLLCHLYKLYERLILNRLSPHIEQHLIPEQAGFRPGKSCTGQILNITQHIEDGFEKGMITGAVFVDLSAAYDT
VNHRNLLAKVYDMTHDYHLVQLIRSLLENRRFYVELCKKRSRWRRQxNGLPQGSVLAPILFNIYTNDQPIQSNTRSFIYA
DDLCITSQEKDFATVENRLTCALSNLSDYYNKNHFRANPTKTQVTAFHLRHREAKRKLNITWDGIPLTNHPNPAYLGVTL
DRTLTFKAHVEKTKGKVSARNNILRKLVTSKWGANPATLRTTAIALCYSTAEYACPVWERSVHAKKLDPVLNDSCREITG
CLKPTPKDSLYLLAGIAPPDIRRKVASQKERSRQMEDPRHPLYGHTEVTKRLKARKSFVTSVAPLDTTADRARLRLWKER
LRAIRCSEMDLEPQEDLPRGADLDWPTWRCLNRLRTQTGRSKTNMIKWGYSNDTNICECGEVQTMEHLLVCRLLGETCTK
EDLAAAMERAIACARFWKKHLVYDKDTRRR
>4006833_Ath_gagpol#LINE/L1 gi|4006833|gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase  [Arabidopsis thaliana]
MSKTMPLWVTVKNVPHSMFSWNGLSFLTSPVGNPIRLHPETELCTKFDEAKVFVEVNLSQEVPKCFRFSIEDEEDVNVEF
VYPWLPPKCSCCNKWGHLVDVCVSKPKSPLKERVMELEEGEVLAVVSDNVIVSKVNTNVEIQNSTLQLSEVVENQEVSDK
VIPQVTQSDGDGWSLVSPGKGSKSSEKSNGKPLEFGQVTLLSSSRYSVLSDHEENGDKEETERGEQVEVLDSNVGALKNS
APETEKTGALRVNLPRSSKSSHKDSLTFGGLIETRVDENRASRIISKVFRDWSSMTNYEHHRLGRIWVVWKNTVRVTPVY
KSGQLITCSVLTEENAEDFFVSFIYASNYVDERRELWEDLRNHYDLPMFRNKGWMILGDFNEILDGEDHSNFVNSPFIPQ
GMRDFQDVVRYCSLADMSYHGPVFTWCNKREEGLVNKKLDRVLVNEVWTRKFPAVYSIFEAGGISDHLRCRIKFASGNTQ
PKGPFKFNNVLTTLPEFLQIVKDFWDGTLALFHPTSAMFRFSKKLKGLKPILKSLGRSTLHNLSVRVAEAYTSLYLEEGY
LQQKSKLHWLDVGDKNNKYFHNSVKARVAMNSIREIQCTDGRVCTSHDDIKEEAHKSPGPDGYTVEFFKTAWPVLGRDLV
IAIQSFFLKGFLPKGINTTILALISKKHEVSGMKDYRPISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMME
NLLLASELVKDYHKESISSRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSE
RGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSW
LKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQL
IKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWR
ILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGS
RGTIDLGIPNNATVAEVMNTHRRKRHRADFLNQIKSQIELARQDRSTDGDRSLWKQKEDTFKSSFSSSKTWQQIRSISLR
CDWYRGVWFSASTPKYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVWFSLTKGLLNGR
NILNWNLITPHLLDSSRPYLHVFTLRYAFQASIHSLWRERNCRRHGETAIPAAKLAKFTDKTMLGRSRFQSL
>4512630_Ath_pol#LINE/L1 gi|4512630|gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078.  (deleted after AA 1064) [Arabidopsis thaliana]
MDDKAYSRCLEVFPRRCFFLRTTGVDFSSETQFMAADYLKMMWRRTEFLDDSVVVSIVYAANEAITRKELWEELLLLSVS
LSGNGKPWIMLGDFNQVLCPAEHSQATSLNVNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNES
WCSRFPSAYAVFGEPDFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKN
PIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAALEMEAQRKWLILVKAEESFFCQRSRVTWMGEGDSNTSYF
HRMADSRKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRCSHDQKKELAMSFSRQD
IKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDF
GPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFII
SALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKT
SPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLDRIEASTIARKLRIAEYGPLLEKLA
KRFRSWSVKCLSFAGRVQLIASVISGIINFWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGV
GLRRFTVLNTTLWDGKKISFWFDNWSPLGPLFKLFGSSGPRALCIPIQAKVADACSDVGWLISPPRTDQALALLIHLTTI
ALPCFDSSPDTFVWIVDDFTCHGFSAARTWEAMRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGVTT
TTDCCLCSSRPESRDHLLLYCVFSAVIWKLVFFRLTPSQAIFNSWAELLSWTRINSSKAPSLLRKIAAQASVFHLWKQRN
NVLHNSIFISPATVFHFIDRELENL
>4263828_Ath_gagpol#LINE/L1 gi|4263828|gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase  [Arabidopsis thaliana]
MSPSVVEEVTLSSPRDSPSAAPKPSYSSIVQNKPSLTKHDFSVTMVDGDPIVQIPDEIFEDSAPLWDDLLIGRFPQTAPH
VAKVHVIVNKIWPLGDKTVKIDAHVVDPKTIKFRIRDSAVRSRVLRRVEPETEVVTEVIPSQQDLQKDPLLVSNLLVNQR
EVETNGTEKNSEAETTELKENENVIAVIEKEQDDGTWHSVSPTKGHQRPKLQHVHENQNHVSPSRYTVLAMEDDTDELEN
QEEGEIVSKQSTELLVTSELVNTQETRPSFPRASKTMHKVVKGSVNQNTKGNQSVSGRRDWSILTNYESHRLGRIWVVWS
ANVRITPVFKSSQMITCSVLLEGKEEEFFCSFIYASNFVEERKILWEDIRNHHDSPLFRNKPWMLCGDFNEILDGSEHSN
YDTSPFTPLGMRDFQEVVRYSSLTDLGYHGPRFTWCNKRENGLICKKLDKVLVNDSWCITFPHSYSVFEAGGCSDHTRGR
IMLEAAAIGGRRPFKFVNVLTSIPQKPSLRALGKEKLGDLPKHLEEGYMKQKSKLHWMKVGDRNNSYFHKAAQVRRMQNS
IREIQGPNGVVLQTSEEIKGEAERFFQEFLNHQPSDFQGMTVEELQNLMSFRCSATDQDMLTREVTSEEIQKVLFAMPSN
KSPGPDGYTRLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLMENVLLA
TELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHWIKLCISTATFSVQVNSEQAGFFGSKRGLRQ
GCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISL
EKSTLYLAEVSELNRNNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVI
VSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQ
SSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLNYRDVAKSMCKVEIKSGSSTSFWYDNWSQLRQLVDVTNARRTID
MGIPLAATVATVLASHRTKQHRTAIYNKIEAEIQSILQRERSEAPYIFLWRSSGDNFRQSFITKVTWHNIRDIHTHRQCS
TMSKDSLFLFRYVFQASLYHVWRERNARRHGEAHSTTTRLIKLIDKTVRNRISSINDVGDHSYDNCLRLWLSTRLHP
>Vingi-3_SPur_pol#LINE/Jockey 135-3119 [Strongylocentrotus purpuratus]
MMADTSTCVLQLNAEGPYPLKARSDYPHIAKENWVNVICLQETHCETEEQLHIEGFDLICFIPHKKHGIASYVKQGMKAS
TTGRSPVNSALQWSTFEAMGTHFCNLYKPPPVDVEIILFPKMPRNSFVCGDFNSRSTAWGYPXTNKNGKLIFEWLESQEL
VILYDSKDNPTFYSGSXKSWTCPDLSLVSSNIRHTCSRTVLPKFPRSGHCPIIISSDIKLQLSNLPKKRWNFRKADWPKF
QELTNNKLTSRLPDPSTSNVNDSYSAFCSMLHQAAKLSIPRGRRHPYIPCWDEECDRLYESCAKSKTIEEREAVGNDLLX
SLGEKRRIRWEEEVSEINFTHSSRKAWTTINKLTGRSSAPKQCPVTANSIASVLVNNGKWQDKTTEAKAHSRSVNSEIKN
LLKSTPESTSMSEAFTLDEVETALKSIKSGKAPGNDNIHTEFXXNMSRKATSWLQAFLSTCMTTSTIPSKWKTAKVIAIL
KPKKPADEPKSYRPISLLSHIYKLLERLLLARIVDTVEEKLPTTQAGFRKGKSTTDQVVRLVNNIETAFQKKQKFGAVLV
DLTAAFDTVWHRGLYLKTLQTIPDVRIVKFIMLLVQDRSFVLETSNGECSRKRKLRNGVPQGSVLAPILFNIYVSDMPKG
ECMQYSYADDTALGFDNHSFEAIKTSLEKDLKMLAEFFNRWHLKMSIPKTVSSVFHLANRCANRELNISLDGSRLNFVST
PKYLGVTLDRSLTFHEHAKATAQKTQARVSLLKKLAGTGWGANFTTLRTSTLALAFSTAEYAAPAWSHSTHVHKVDVVLN
DAMRLISGTLTATPVSNLPILSGIPPAQLRRDAQYTKLAQKHDRDKCLVPAPSAFEGQRLPRRHFATQAAELPLEKPPST
LATWIAKRWSDLQWNSSTTNLKEFIPKPCAKPSGSDLPRKAWVNLNRIRTGVGRTQYFLHKIGAXSSPNCACGEIQTMDH
VIDDCPIYKSPHGASGLRELDDETICWLNKDLPI
>Vingi-1_CJ_pol#LINE/Jockey 3-3149 Fragment [Caenorhabditis japonica]
RPAPPPPSQHTTKCRAKPAKTRILSWNVNGWSKRRSELATIIAKEKPDIVCLQETKLDKTNLGYTPTGYKVALASRNKFG
GGVCTMVRDDWIFTISKTTSKKTAEILSITIDKLMVTNVYFPPRSSDSPTAEVREDVMEILDMASEKHIITGDWNAHAKT
WHSHKTDERGAMIEDELDTRGVHVVLNEDSFTRAASGVLSSPDITISTSDLAACSSWRTCGVLNTDHLPVIIDTMAEIPK
LVRPXRIMANFKKANWTDFSDSIETKVACYAGPRDAYSLENFLSATITRAASKHIPHGKFTPTREHTGDTGEIAELTRER
ERIQKRNPLDSNLKALNDKIEAARRELRRLXWHQKIEDMEDKRKIDCNALWRVIKGLKPKTKSTGSIRLPNGTTTTNPKT
IANAMASSLVAVGKGRDCREERIAWRRTKRRLKKLRPQLPASSISHAEVKLAILKGKPSKALGPDGICHLHLKHVPDNCI
NLMAELFNASIDENKVPDSWKKANVFMLPKPGKDPSEIKSFRPVSLLSPVAKVLERIILERIRREIESPKDQHAFKKNHS
TTTAITEATSCIVGGLNMEKPACRTIMTCLDMKAAFDTISIAKLLCGLEDAIADKKVCGWLGNYLHKRRINVQYDDVKSS
WLTLRGGVPQGAVLSPNLFNFFIRDVPAIPDTKIITYADDMTLLVQDPLLSKAAEKSQDALDSLQKWFKDKHLDISAGKS
TVTIFTADTKEFKYDPGLKWEGSVIPMQNRTRLLGVELDTMLRMTGHVEQVSARLAKANNILRALAGAKWGSSKETMLRT
FKAIIKPLATYAGPAWHQLMSETQKTKLERQYVGGLKACCGLTKDTPRQLVYHETRMLPLSEELTLGSEQLAIAAIKTPG
HPTSDLSRRRPKERTCGNRPRTPPLGCLEDRGDEWRRMRGDTRAVQKRNHTSFVKSYLSNHGIHPILGRQPPALSEEEST
LPRNTRVELARLRAERSLLLEKYKAKVENRPVVCCIKCNDDVGDLKHFLKCYPVKPLPMSKLWKDPVAAATALGLAVTPF
DPGGDADS
>Vingi-1_AMi_pol#LINE/Jockey 238-3273 via tfasty with Vingi-1_PMa_pol, 5 frameshifts and 1 stopcodon. [Crocodylidae]
PDLSAQQFNSSFQGQVTCWKGPETRILQRNTEGLPWTKCEYVANILKKHNIDVLALQETHASNGQQASRYRIHGYNKPTT
SHYHPKYGLAIYIYICGKHHLKYGLAIxVKNTITDFDVLPPTEEKATYTTAIKIGELHITNVYKAPNSEWPKPALPSAPI
PALYVGDFSSHHAMRGYEANEADSEDLTDWMSTEDLQLVFDPKQRATFHSAHWQHDYNPDLTIVSNDLSGSTLPCNVLPD
FPNSQHRPIITYVGIRIPVTLSKRIPRWNLAKADWVCYREAVEKAVTRIPATPECYHWFIGLLIAAAKKSIPRGFRGIYT
PCWTKETQDLLRQYNRSGNPQVAKALLESLDSARCQRWIECVEGLDFTHSSRRAWALLRCLGAANPAEYRTPKLHPNSIA
SKLVDNTKGPLDKNTKREVNRQLHWIMTSIPIQAPTAISIDEVKEGLTATKKRKAAGGDGILPEFLHHLGPKGLQWLAKL
YTKTMESGCIPKAWREAMVIAVLKPGKPINDPGSYRPISLLCTTYKLLERIILRRISPFIKPVIPDEQAGFRPKRSCCDQ
VLALATHIEAGFQKKSKTGAAFVDLSSAYDTVWIKGLMLKLAKIIPCHQTLRLIWTMLSNRLTVHLGDRVSSPRFLSNGL
PQGSVLAPTLFNVYTSDMPPTKSRKFVYADDLALATQAAAFNDIESTLNEDLNTMEEYFRKWRLKPNPHKTTVTAFHLDN
RNAKRTLKVTFCGNTVRHDPTPSYLGVGLDRTLTFHDHLKKVAAKTKIRVNLVQKLASTSWGASASVLRTSVLALAYSVA
EYCAPVWTRSSHTRLVDIQLNSAMRCITGTLKSAPTPWLPVLSHIAPPPIRREAATLREVQRIKENKRLPIHQDLNNAPH
HRLKSRKPFWIHALNLQQCDFNPDEAWKTEWSSQEVPNKHLVIDPTQKVPGFDLPRRSWATLNRIRTNHGRCGYLMHKWK
IKNSPVCDCGHPEQTMEHITTQCPIHKYEGGITAIHSAAPDAIVWLNHLNVKL
>Vingi-2_AMi_pol#LINE/Jockey 1-2615 via tfasty with Vingi-1_EE_pol, 6 frameshifts and 2 stopcodons. [Crocodylidae]
DEAGHFTISGFDLICYTLHAKYGRAICNNISEATHTLSTNHCDVIKVGSFSIANVYKPPSETAIYVGDFNSYHTDWGYSH
SNEDGDLLQNWASSNDLALIHNSKQCGTFYSARWDQDYSPTCWATSVNSHSQPASCIVLDDFPHSQHSITHPHWLQLPVI
KCIRKPRWNFRKASWSLFMETVExSIVTIPRQNIPVDEAYKRFLALYKMAQSSVPRGFFPLYTPCLDGECSALLDEYEKS
GNPDITDHLLESLDAARRNHWEDSTSxLNFCHSSHVKNGSFPSKCSEPRSSTNLFTNRTNSVLCKLKSGTATGYDNVHPE
FLKHLSPRARNWLLLFFNHIMHEGRIPSAWRRAKIIGLPKPGKDPQSAASYRPISLLSVCYKTLERLVLQCISPVIDSAL
SPDQAGFRHGRSTCNQVLALTTFIENGFQKNLKTGVVFLDLTAAYDTVWHTGLLAKISGILPHWATHLVELLLRGRRFRV
HLANRTSSWRHQTSGLPQGSVLAPLLFNLYINDLPATGSRKFVYADDSAFATQARDFSNVELTLDGDMRLMSEYCLKWRL
KPNISKTVSSVFHLHNASANRELTITLNGQPLKFETHPVYLGVTLDRTLTYKSHLQKTALKIKTRNNLLAKLAGSTWGAN
ASTLRSSALALCYSAAEYCAPVWARSSHSKLVDTQLHATMRLVSGTLRPTPLPWLPVLSNIAPPHLRRTNAEVNLLARLR
DNPTLPVHWDIFHPPIAQLPSRRPIWSPFQNPLTFHFSLLTRWHEEWSAQAPINHHIISDPTVSQPGFNWPCRYWALLNR
FQTGQGHCASNLYQWGLRNDNKCPCGQVQTMSHIVDSCPFTMLPGGLQALHTGDDIALRWLKQYAETAYAK
>Vingi-3_BF_pol#LINE/Jockey 177-2201 Fragment [Branchiostoma floridae]
CRITTYHRLLHQDFQKSVQDPLPKSQHSPISVLLTPVVKPITNRKPLPRLNYHRARWEDFTSKLEEGIEDIDPTSEGYET
FQRLVWDVAKKTIPRGCRKQYIPGLTDSSKEIYDRYTKAYDTDPFAEETIELGENLLASLSEARKERWRETIGGLDMTHN
SKKAWKTIKKLNADQEPDQRATAVTPNRVAKQLLDNGKPHNKERGYVKRMKEEMRRALEESDEIFFPFSREELLACLKHL
KTGKASGLDGISAEMIRHFGDKALDWLLQLFNKGASSTQLPKLWRRAKVIALLKPNKDPTLPKSYRPISLLCILFKLYER
LIMTRIKPTVEEQLCRDQCGFREGRSCCGQVLNLIQFIEDGFETGTITGAVFVDLTAAYDTVNHRALLTKVARMIKSTQI
VCIIESLLTNRHFFVEMDGKRSRWRARAQKNGLPQGSVLAPMLFNIYTNDQPTFNNIRRFIYADDLCLATQARSFKTIEK
RLTDALQVLSGYYKSWFLNANPGKTQVCAFHLNNHAASRKLKITWEGKELENTPYPVYLGVTLDRTLSFKEHIAIAKLRR
KVSTRNSLLGNLANSTWGADPSTLKQTALALCSSTAEYCAAVWERSAHASKVDVELNRACRTITGTLKATPLPALYKLSG
ICPPSIRREAQTRVERDKQLRDPRHPLHGHQEVP
>Vingi-2_HR_pol#LINE/Jockey 20-3181 [Helobdella robusta]
MRHSQTSSTSKTARIISHPAYQNTTGFVAHSPGQLTFLQWKCNGIKNKKDELQQHLETHKIHIAALQETKLTSRSKEPEF
DGYSLYRKDRGLGQGGGLVMLIHNNIPYSIKQLPDSNPIESQAIFINTNNKDLTIINTYIPPQSVCPSHFTASISDLLSN
PNTILMGDLNAHDSLWHSNIQDARGEALAVEIDDSDCGSLNLDSPTRLPNNSQPTSPDVSIASDSLISSIDWTVLTTLSS
DHLPIHITLHADLEPTKTPKTTIVNFNKANWARYTEETETAFAKSVSPNDPSAAEKLFRHILSSASARNIPSGRRILSRP
GLSREITDLMDQRDSLRSLDPTSDNINSLSTVIQQKINNLKLTRWKEYLSTFNKSTNTNRLWSTIKALNGKPKQYPNNAI
TFNNKPITNNKQMANLFNKTFTSFKTHISDKLNRFTTRTIKNLPLDDHQIFTPDQVSTAIKQSKPSKASGPDNLTIIHLK
HLGPLGISFLTNIFNSSLITCKIPDIYKKAKIIPLLKPGKPDSDSKSYRPISLLCPAVKILEKCLLPILSKHLTLADHQH
GFRPNYSTTSALTTITNDIANGLNHKRPAHRTVLAALDLSKAFDTVSHRILLSDLLTTTLPRSVIRWMSNYLHGRTASTT
FRQQHSKQRIIHTGVPQGSVLSPSLFNFYVSKTPAPPPDIKIISYADDFSIYTTGPDAAILTRRLNSYLTELHDFFHNRN
LEISTSKSTITLFTTYTSQYHYHPQVKVNNQTLPLEHNPKILGLTFDTMLSFSQHHKMSASKASKRNSILKALSGTTYGQ
DKETLMQTYKAIGRSVIEYACPAWSPLTSDTSYHRLQRSQNAALRVITGCHGIASEQHLHSECQMLSVKQHTDLLSSQFL
LQCHNTSHPCHHITREPRPDRNIKHTLFSKYVQTVQTVLPTDTDSRALKAASSALHCSAAKLASETYHAAVLLNGWPPPT
PKIDKAEESLPRALRRKLAQLRSGHCISLNSYRSKIDSRVSNICPICQLLPDDVPHLFSCPKNPTHFTIIDLWRNPVAVA
NWLRPRLDPSNDV
>Jockey-1_Dro_pol#LINE/Jockey 1312-3903  [Drosophila fruit fly genus]
LNLLSNMCTPISKSLTHINIMAWNARAVSSKRLELVNFLTKNQIHVCLVSETWLTDKIKLSIPNYKVYRNDRGTTKGGGV
AIIVENSIQHEQIKSIKTHLIENIAIKINIDSNNSLKIYSAYFPGASAKCLNNPCNFPLTNKHIKTMFRADLVKFSQIDG
HYILGGDXNCRNRLWNCARANSFGNCLHELLSTGKFSLLYSKDPTYLPANFSSKPSTLDIFLTNSPINFSEPIVHTDLSS
DHLPVLCKFTKGVHCKNVTHLQYSKANWKKFKHILNVATLANLEALSDFEAXQEVIDVMVNILQADIHNAIKQCVPEAPV
RPIVLKIPRWIKNIISDRNTNQRKWIRTRQPIFKARVNYLNHMISQKLFELNNEKWNLKLSKLDKNSRPFWKLTKIIKNK
KQFIPSFFHNNIVFTTRAEKADILAEVFESKHHITDSFSDYNTSTEVQNTLSEFNNLNDLTFTPEITPKDIDVIIKSLKN
NKSPGIDKIPNICLKNLPKNAIDFLALIMNKCLQIGYFPKNWKIARIIPIPKPGKPPDCPNNYRPISLLCGFSKIFERLI
KSRLNLHVEDNNILPPVQYGFRAFLNCLHPLDQITNYIKESFARKESVGMVTLDIEAAFDTVWHHGLIHKLITCNSPIYL
TKIIQSFLSDRYFYVSLDGTNSNKKLIKAGVPQGSVLGPVLYNIYTYDIPLFQRCHTLIFADDTALFSSGTTYNSIENEL
QMSLDAISSYFYKWKIKINASKTKSIFFTKKRKLCFLPNSELKLNNTDIKWENSIKYLGINFDKKLIFNGHISHTIDKIN
RTIRILYPFINRRSNLSNHNKLTIYKQIFLPIMLYGSEIWGCSAKTHINKLQLAQNKILKMIYN
>Jockey-1_DPer_gag#LINE/Jockey 67-2172  [Drosophila persimilis]
MDCSPMVSSISTLSDGTTNHTQINDNNNKSPGQSTMDKNNKVETRLNPLTTTPPHRPRVASTPKSTAKNPISKAGNNYRV
GDARHSTTPATKPGPLCSKIRKVLPLTLSRPKRPQSVTAAIVMEAVKMNIGPTIAAKLAKTLSKTATAATVDAGESRHPS
EAMEMDPYTRDDAAETPGDSALGQQQQQQQQQTQQSHLQDQGQLPHQQQQYKAADQKEPQRPITETKIPAIYLHDVSNIQ
PLIESLNNAPGEQNKFTTTSVRGNKIKLDCGDMETYNRVMAKLDADNINMHTHQLRKERGYRIILRNLHHSTPCDWIRKL
IGEMGLSVRYVNVIKHRRSRKPLNMFEVELEPTLDNGNDKILSLTTMGNQEISVERQMRRIDPVQCHRCQCFGHSKNYCR
RAFVCQKCAGAHPSTACAEAKIPNPKCANCGEGHVASYRGCKAFKQAQATLKSYRAHIAIGKQKRTNWQHQKNTNSTRQN
AAYSGEINKSLRWQQRKQKHHLPKPHQNTQQQQHNNNSSQPTNSQNINKAPKRQLFSQLFSNNNKLSVGQQESNISRAPR
GHHQQQQKTQKPAPANLQQQHNNSQQPTISRYTNKTPNLQPFSNKNQPSDDLQGNSISRPHSSSRGHQQQQRESQKHAPQ
PQLYQQPGAPYVNDQLMQVVHQNLLLVSEMGKKMDALIDLLHTFIISNKGQTISTANDIVNE
>Jockey-1_DSi_pol#LINE/Jockey 3-2629 via tfasty with Jockey-3_DBp_pol, 1 frameshift. [Drosophila simulans]
ELYCKTNXADILPISETHFSDRSYFTLRGYDLVSAIHXNGSXILIRSSIKFDTQPPIQEDWVQCARISVSTTHGDITLAA
AYCPPRFRATDDCFSSLLDSLGPKFVIGGDFNAKHTWWGSRVCNPKGRALCRQVLSRNLNCHGTGTPTYWPTDPAKTADI
LDFAISGGLDPARIQTREVEDLLSDHSAIAVSVYASAMLRSAGKKLIFKTSDVSKYHHWLNNTTVTNPPLDTPELIDAAV
ANLTSQIQEAATHAAPRFSNHTRDSSRDVHFWNPRVNELKSEKRRLRRVWFLSRNPRDKTALNRATKELKETLVRLRKEA
LDSFVGNLAPGDPHHNLWNVTKRIKRPLKRIPPIRRQDNSWCRTETERANAFAEHLEEVFTPANRCSPNEAAETARLLTE
PLSDSESIPQATEEEISNLIAAMGNHKAPGDDAINAIAIKLLPPISKSLITTIINKCLQLGHFPSSWKRAEVVMILKPGK
HEANLASYRPISLLPVLSKILERVFLCRVLPVIEEAGLIPDHQFGFRRRHGTPEQGHRVAQYILDAFENKKYCLAVMLDI
KQAFDRVWHPGLLLKLKNGLPQPYFKFLKSFLEGRRFAVRCGEARSGVKEARAGVPQGSVLGPLLYNAYTADLPVIPSQY
IMAATYADDTAFLTTADTPAEASQTMQEQLDLLNTWHKRWNISVNSDKSTATTFATRRGTCPPVSLNGSPIPEVANPNYL
GFTLDRRLTWRPHLLKKRKQAENRVREFYWLMGRRSKLPTSTKLLIYKAIIRPIWTYGIQLWGTASKCNINIIQTFENKT
LRTVTNAHPFHDNATIHEVLSFPWVKDEIKKSSRQYMQRLQDHPNNLAQNLLDSSQRTRRLHRSHPLDLSGIRHAH
>Jockey-2_CQ_pol#LINE/Jockey 1502-4177  [Culex quinquefasciatus]
MANLSSLKVMNWNCRSIRNKVVEFFHFLETHQIDIAAITETWLQLNNSMYHEHYTIVRADRESTEAARGGGVALLVRNGI
DFSKLETSTRAIESVGITVKTDPAPVNIFAVYYPGSPRRATLSQLRRDIRQLSSIDGPFFLVGDLNARHRMWNCARANKA
GQILHQEYESKDIYIHAPDTPTRCPAGRGRPSTLDLVISNNQVQMSKPITHVELSSDHLPVTFTIDVDVPVAPAGRLVRC
FDRANWSTFARSIEREVDLNASWINTLDRSEKIDDAIDKFTAILKAAEEAAVPSRRILPQKKDIPDELKLLIRLRNVRRR
QFIRRRDPLIGAVVTHLNNVISTKSAEHRYKNFGSLLRTLDNGSNKFWKLTRNLRNTVKYSPPLNVNGDLVASPSAKAEA
LASAFAAAHNNEQPGDPETSAAVENALGHIRATTPPVPPAALVKPKEVKAIIRTLKNRKSPGQDGIRNTCLKQLPRKGLV
VLTKIFNACLALGYFPARWKHANVIAIPKANKDITNPGNYRPISLLSSLSKLLERVILARINRHLETEQLIPHEQFGFKP
GHSTVHQLARISEMVKRGFLAGKSTGMILLDVEKAYDSVWQDAVVYKLFRSNLQPFLVKIVESFLTNRSFTVTVNGERSS
VHNIPFGVPQGSVLSPTLYNILTSDVPMIDGVSYAFFADDTAYLASDKDPKIVVTHLQAAQNNLEEFQRKWRIKLNAGKT
QSIFFTRRRAARHLPRRSISVNGQPATWDDEVRYLGVVHDKKLKYDKHVNNIIEKVDRSTKALYSLLNRRSKLSIKNKSL
VVKCIIRPMLTYAAAVWGNCAKSHRKRLQVKQNKLLKMVHNLDPWYPTDDLHELAGVDTIDASIEKATRTFRTSCGMSTN
PLIEALLRQQL
>Jockey-1_DWi_gag#LINE/Jockey 216-1874  [Drosophila willistoni]
MSTNSGPSSLDPHQQQLQELIVQQQRERRLSVQRNNAYFSVVSPTPPNANVSNNTESASHSAINSNLPWREQCASPSISI
TGSPIAPTSTVSSLTATSTVSSLTATTATSAEVLTCLKPSTTSRPESATIVNPTTSVQTGMDRYIKITKRKLSPQKKKSG
NTPKITKPNERVAPLSGNRFKILADQQDDQAGAVDKVKSARPPPLYIRGANCSALISKLVETVGANNFVVTPLNRGNIKE
IKCQAQTEDNFRIIEKYLRNANINFYTYQLKSSKGLQVVLKGIEPSVPTQEIADALVEKGFAVKSVVNIINRNKVAQPLF
KIELQPDAKRSKPNEVHPIYNLQLLLHRRITVEEPHKRRQPPQCKNCQEYNHTSNNCNLRSVCVGCGEHHEDGICTKDRN
NVALRLCSNCGGNHTANYRGCPVFKDLKSHLNGRKPPAGPKIIFNASKTTPEVFFAKAARSSNMTATTSPSVSFASVLRT
GQTEPAKETPSLRHLQNPQPSAPELGQQTPSGLEALLISLNQNMTTFMTFMQNCMHELMRNQNLLIQKLIENK
>Jockey-1_DEl_pol#LINE/Jockey 1291-3898  [Drosophila elegans]
IMQISLNLGIWNANGLSNHVNEISLFLKTNAIDIMLVSETHFTSKSFFRVVGYDTIRADHPSDRAHGGAAILVKNGLKFK
IMDSTRENAMQAATIEIKCMHADVSISAIYLPPRFTIKELDFKNFFQGLGTKFIVGGDFNAKHPWWGSRLINPKGSELYK
CIRNNNITTLSTGKPTYWPTDIRKTPDLIDFVAFSGIPQTHIRLMESFDLNSDHSPIIATYSTIAHILDKPYKVISASTD
IYAFKSYLEEAISLDISLKTGEEIDYAVELFTNTIHKASYINTNHTHRNQQPSQLYLTTEIREKIQLKRDLRKRWQETHY
PADKRLYNKAASELKQLLSNLRNESLAAYLRNLDPNSSNKEYNLWRATKYLKRPAKRNIIIRKSNGNWCRSDDEQAEAFA
QHLHSVFQPNDISNPITEAEIENFLGSPCQMSLPIKRIHFDEVVTEIKCLNNKKSPGPDKIDGITLKTLPSKCIRFLTLV
FNAILRLDHFPSQWKCAEIIMILKPNKTETELSSYRPISLLTIFSKVFEKILLKRMLPILDELAIIPEYQFGFRKNHGTT
EQCHRVINEIVSALENKKYCTATFLDVQQAFDRVWHNGLLYKIKKWLPAPFYLLMRSYLSKRCFYVQQRNDTSTLLRINA
GVPQGSVLGPVLYTLYTADMPVTNNCTIATYADDTAILATSSSRDEASHLLQCELSLIEAWFLRWKIKINSLKSVQITFA
LRPGNCPNVTLNGSEIPQDTCVKYLGMHLDRRLTWKHHIKAKRQQLKLKTLKMSWLLGRKSAATLENKILLYKAILKPVW
TYAIQLWGTASNSNIEILQRYQSKILRQIVNAPYYVTNANIHKDLNIPTVKEEIKKYSKKYTDRLHNHVN
>HeT-A_DV_pol#LINE/Jockey gi|34558711|gb|AAQ75088.1| pol protein [Drosophila virilis]
MIGLRIGIWHANGLSNKTDELEQFIIRHNVDLMLISETRFNFNSRVQIPGYSIITANSPQTHLCIGGAAILISNHIEYQA
LPGISLPQLQCAIVRLRTDLGGANIASCYWPPNHAVLADDYVCLFNQLGENFLIGGDWNAKHRLWGNMRRCPRGSILANI
LMDSNKYNVLTTAEPTHFPSNSNRPSVLDFGIYAGISSHRLAISRVTELHSDHLPLLVQLKITINGQSLWNNPNLIHRSR
PRRRNRHRLLTERSNLEIFHQKLESSINLNIEIDCINDIDDMLENFMSKLHIAAEASNSRSAMASIIPPHQNSSNNTLNN
ENNNNVNLDLSSPQPLPLSAFIRTDEHRELMRLKRRLRKRWARTRQLDHWLEWQRVGRQLANQLEQQRRDYVDYVLSNAD
PQKKGAFNLWHATKYLKRQPHAQPSVRNLNGHWCQSAEEQAEAFADELQARFTPFNLAPSGQCERVKRTLNQQVNLYDNT
LNAINPQYPILSSHIRHVTLCELNTYIGHLQMRKAPGLDQIDNYLIRSLPQKARLFLLLLFNGMLRLRYFPSAWKCAAVR
MILKSGNRSAANLNSYRPISLLSTISKLFEKVIYERLNDELQSPLESESELECSRVIPNHQFGFRSGHGTIQQVHRIVEH
INNSFERGHCTSGAFLDLQQAFDRVWHDGLLFKLRTHTSEPLYQLLKSFLSNRSFCVLSTNPTTNGNRGADACHSTLRPM
VAGVPQGSVLAPLLFNIFVSDMPCIATHIQQVFQPPPGQTNTSIIGLTATYADDTAFLCSAMNAVVATTILQGHMHRFVK
WANNWNIQINDNKSVHIIFTLRRQIANAGSLTTQLTINNNIIPAKSYVKYLGLNLDKKLNWARHARLQHKLCAKNCSNTN
GYYLPANPDYH
>HET-A_DV_gag#LINE/Jockey 1273-3807 via tfasty with BS_gag, 2 frameshifts and 3 stopcodons [Drosophila virilis]
MSDPNTTPTTHLSAEPXISPGLLSNLSGLLLSPILTMPASMNGLLSISVDSLAPATALSPQALISTASETPAQKGQEQKR
AAXKETENTVSETTTTSSITAKTTATNTNIESIHIPADAQAQLAHFKRLIAQLELDTTPPNSQAADNFTSYYDEHSSSDS
IVNIMDSDDAPCTPKPAQPLPMSTFRHHTPTSVVATKTSTQVISPTYAAILAGNAANQKPKNSTCISSSSDSSSNNAPGI
GGPGGKITTTATTGASHYKLLHPTGKTANQIRKNNARKSNRQNSAISRLSQQDAQRRNQFANRFTLLSESDFEAPDTHQS
QQLPVENxQFGRAVQAALSPVKQSTTTTTTPTNTRAALTSIHSATAATAVNATPSNSPDCQQQQQAGAINVSAPAAKHYK
PPQICIQHYNQPDQNGIDSVIAKLNGQNPPIIDYGLKLGGPGILRILPKTLETYSKIINVLNTDNSINYNTYQRREERSF
RVVVRGIHASTSTDAIRNELTCMGYTIRNVYCPKYKNRSGPGTYQPNIFFVELAPDPTKNRSIFEIRNLCKYVVRFEWPK
IDGKNLPQCHRCQRFNHTARYCRHPARCVKCGNEHLTQTCVKPANVPATCANCGSDHTANYKGCPLYLDLLQAKLLSLPN
SKNISPNVRQPQPKLQRRQKQPQRQQSAQQQQQQRKNQRQCSLSxSTTKITRNQNKMVDRxERNQLALQLDSPKIYHTIT
NNNINTANNANNSNPPTVSSSNSLDPRSRWARIQSLQQQQQQQRQLERPDSVQTREQIISRQRQMLENCPSGSHLRHNPS
HNNNPRQCKLTLSSSHHNNSNFTTPSSNDCETIYCFKWPTSSKSS
>HETA_gag#LINE/Jockey 731-3492 via tfasty with TAHRE_gag, 1 frameshift. [Drosophila fruit fly genus]
MSMSDNLFSDDEVLSISSSPEQRSSPFYLNISPMSHGSDNSQINTVIINSKKLPSNQADISLKNSSGAAIKIVNSLSHKK
KENTNVNNAQKDPLSLTNTTASTCGAKSSISEGKLSSPPSTSHTYEGKLLTKLTHTHTDFRGAKTSDAMGSFPSLSHSDN
SIEKNLSSSTKIGPNASSPPSHAHTHTSKSTDISLESRSKHPALANTDARSIKANANDNGEIFSSLIQIDERKQEERPCT
TINAFWSIFKPKPDVTKLSLKRKPTNPTKNTGKKCISPHKKSAYLCPSAQDDLNLNLNPKSSAKPTVVNLPAARILSRPA
AKRDLFKSSSSRSPDEQPMSFSEVVAGTGSIFAAPCVPAPLTKTPGKRTNDDLDCSNFKTPNKKLCATSNFVTPSIFPPL
ITPVFKSKAAQSVYEESKARNGPPPPALACSINASARSATAPPGIAPLPPHNTDAELPPWKIVPQSRRAPPILVNDVKEI
VPLLEKLNYTAGVSSYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPCSWIVEE
LLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDGSHDKILSLKQIGGQRVDIERKNRTREPVQCYRCQGFRHAKNSCM
RPPRCMKCAGEHLSSCCTKPRTTPATCVNCSGQHISAYKGCPAYKAEKQKLAANNVDINKIRTIKDATNNFYKRQGPPLR
NNTPRLPHSSAILSKSIAEARQEAARKSMLNPFRQNINDRRPRFSSHDTAIQKRLNKWRRNTNKIPKKGRIALKDNAKPR
PAHRTSNPAQRHLEDYQDMLRRERSEENDQESEKGTPNTKQVGNDSPPTTSRAARASFKPRIIDDTTPSPKICNPNSQKG
LLDDPTTSLANRVDNLEKKIDILMALIIQGRNNNLDMDTSN
>Ingi-4_AC_pol#LINE/Jockey 714-4652 [Aplysia californica]
MHRTAGRPQTWVGRKATGSPANMAKKNKLNSSELGRRLVYQGPRHAVPLQAAGEKLATGKTEQFRLLQVNVCGLANKKIE
ISHLLDSRKIHVALLQETIHRNTDPYIPGYTHYTCTCPDCQGVITYIRNDIQGKVENITTDTRTDTQKATIWYAGCKFTI
FNIYSPPGNDCSFSFLQESIYTKTIVAGDFNGHSPQWGYRTYNKSGMAIEELCGTTNLLVLQDKKSTPTLLHRAHNTLSR
PDLTILSSDLFQRHTTEVLDGIGSDHRPIMTSVSTPSQSHFVQKTKWNFKKANWELYKTTTEKLLKDITPNPSVDVFCGA
ITDSLLKAAALCIPRGCRKKYKPFWNKNIEQAVQDRENARKTLESNPTTGNKINYKKASAKVKQTTLLAKRNKWSTTVAD
LDLRRNGAKAWSLLSNLCGEKRRNNPKPMDTEEGTIVEDQKKAETFNKFFASINKATPHTDQHRDCLKRLKEKEHAPNAS
ISLFEDDFTLTELNRAMKKLKPRKSPGPDKIHNEMLVNLSPIGKGYILQLINKTWNENTIPRAWRNAIITPILKKGKPAE
EMKSYRPISLTSCIGKLAERMVNHRLYWWLETTGALDSNQAGFRAGQRTDDQLFRLSQKVLDGFQEKKHTVAVFVDLQQA
YDRVWRKGLLWKMTQTGIHGKLYRWVKTFLTDRTIQTRINNGVSSKAVLEEGLPQGSSLSCTLFLVFINDLPETLKSEKA
LYADDLAIWHTSKQAGISARLINEDLDRFNNYCCKWKLKANCTKTIYTVFTKSHKVAKQNLTILLAGNKLEKVENPTYLG
IELDRQFSCKNHIWNLKTKANKRLNLLRRLASTSWGADKDALRQLYVGYVRSAMEYNLTLQTICSKPTQRSLDKIQNQAV
RFISGALRSTPTAACEIHTNLEPLDLRREAAVVEMSERYKRLEKNHPNRKIIEQRRPKKRIHGRSILDTATELAEKHHLP
CNREMLKPLRPELPPNTNIKNANIKTSLIKETVKKECDPVELKTTALKTIDSYPSDSIHIYTDGSAFKGTINAGFGVRIE
HPDKTCEELFDACGTSCTNYEAEAIAIEAAILHLTNIFIIHPNKIKNTIIFTDGKSVLQALENMNFESPACLSVAQTINT
FIQTYAVDLTLQWIPGHSNIPGNDRADTLAKKGATQTQPHNPVSQQTAKNIIKCNTREQWLNGWAMGKTGRTVFAHMTAP
NSKDAINSLSRREQVTIFRLRTQHIPLNSYLNRIRKDTPPDCPLCDCQDETVPHHLFNCPALCDLRSTYLPASPDIGNTL
YSDKAQLIKTCQFFAISTDRRARTQMAAGSEK
>I-1_DR_gag#LINE/Jockey 3-1256 [Danio]
MAASSGGGAVQAVGNDWIENGQEWGDGNDGSGNEVEEMEGSESCEPWTNCRGKKRKKRKNKLDSDEEMRSKVKEGNEEYN
VFVRLVQEGATFEDWSPIQLTKALYKEIGEVRCAKKLRNGCLLVSCKDEAQQKKAIKVNKINGKKVKCSEVYDRKLIRGV
ITGIPVSESLNNVIEGITNAKIKEAKRLKTRWNGAICDSLSIMLTFDETKLPDKVFIGYMSYEVKMYIPPPVRCYKCQKY
GHIAAICKGKMRCSKCSGEHEYGQCDKEAKLKCCNCGGEHSSAYRGCEVNKRMQEIQRIKVTQGISYAEATKKVRPTREQ
MGQMPTMREERKDMIKCKKCDKIKEETLIVDKNEFVLFMAEVINCSAQTTSRTERIKIIVKAAEKYMGIKGIPWESVRNT
LNEEVQQQQSQAWGGVA
>Jockey-2_DEu_pol#LINE/Jockey 1886-4558  [Drosophila eugracilis]
MTSLRISTWNANGVSQHKLELAQFLLDNQIDVMLLSETHLTNRYNFQLRGYSFYGTNHPDGKAHGGTGILIRSRIKHHYH
TKFAKNYLQATSINIHLNTGKQLMLAAVYCPPRFTIAEDEFMQFFNSLGDHFIAAGDYNAKHTHWGSRLVTPKGKQLYNA
IIKAKNKLDYVSSGTPTYWPADPKKLPDLIDFAITKNIPKNMISAECLSDLSSDHSPVLFTLLRHPGTWDQPLKLTSHKT
NWVKYRKYISSHIELSPHLSDEANVDSFVNSLESVLVSAARVSTPHTINTQCNQKKSNLQIEQLVLEKRRLRRAWQFHRS
PSAKQSLKHASRQLAQALQQEETYVHRRYIEQLSTNSTKHSLWRAHPTLSSPKETVMPIRNSTGGWARSDADRASTFANH
LKNVFQPNPATNAFTLPTLSYEPQPQHEPIEFRPNEIVNIIKRQLNPKKSPGCDLITPKMIIELPYCAVCTLTQLFNAIA
KLGHFPVRWKKSIIIMIAKPGKDHTIPTSYRPISLLSCLSKLFEKCLMTRINTYLRIQEGIPSHQFGFREKHGTIEQVNR
ITSEIRNAFEKREYCTAIFLDVSQAFDRVWLEGLMYKIKTMLPYSTHKILESYLHDRKFVVRCNTAISDDYTVGAGVPQG
SVLGPTLYVLYTADIPTSTRLTTSTFADDTAILSRSKCPIQATAQLARHMVDVEKWLSDWRIKVNELKCKHVTFTLNRQN
CPPITLNNTLLPQANEVTYLGVHLDRRLTWRRHIEAKRTHLKLKASSLHWLINARSPLSLEYKIMLYNSVLKPIWMYGSQ
LWGNASNSNIDIVQRVQSKILRTITGAPWYVRNENIHRDLNIQPVKEVIAEQKVKYFTKLSVHPNHLARGLTRLSNQSRL
RRNDLPTQRPT
>Jockey-4_DBp_pol#LINE/Jockey 953-3706  [Drosophila bipectinata]
CKQSCRRVHPPLPSAMGALKIACWNPNGISSKANEIIAFIELYEIDILLLSEVRLCSRSTLRIPGFTLHKADHPDDRRHG
GAAIFVKSAIAHQLSFTLSEEHIQAVSIEISTRRGRFNVASVYCPPAVRWTEADFTTFLSNLGDKFLAAGDWNAKHRWWG
NYRMCARGRTLSSVLANVNVDIVATGEATCYPYRANATPSAIDFGISKGFRQQQVSVRALTELSSDHLPLLFIINEEAQF
HKGVPKMLPAHANVATFKSYIDAHTVLNTPIATCSDLDAYVDSFTSTITEAAQRATPPQRQSGHPPNRRAPILTPEARAL
LDLKRHLRRQFIVSGDPATKQRLSSITNRLRRLLAKTRQKNIDTLLEGAGPDNCSDFSIWKLTRGIKRQPLVQSPIQSHT
GRWLKNDSDKANAFAEHLSATFTPFELPDASHRDEVANFLRAPSQPXRPIRHTTPQEVTLQLKALNLKKTPGPDGIDNRA
AKALPPKGVLALVKIFNAMLSLGHFPRQWKQARIIMIPKPSKPLSRIDSYRPISLLSTFSKVFERILLSRLLELPQVEGH
IPQHQFGFRKSHGCPEQVHRLVNHITHGLEHKLHTVGVFLDVKQAFDKVWHEGLLYKIKELLPTPYFAILRSFIADRTFV
VAVRDSRSSLAHIHAGVPQGSVLGPFLYTMYTSDMPVPSPTTDARMLLATYADDTALLASHTSQLSASAAVQDWLNAMER
WTRQWNIAINCSKSACVTFSLRLVIDIVHTFNGDAINNATSHCYLGVHLDHRLIWNTHITAIKAKCVRKLQKLDWLLGSK
SLQLSTKVLLLKAILTPTWTYAIEVWGTASKHQLNRLRVVQARAARRASGLPWYVTNQAIQNDLRLVPVGDLLNQHSRRY
SDRLTSHPNPLASRLADPQTLRRLKRFHPSDLSSRVVQ
>Jockey-4_CQ_gag#LINE/Jockey 55-1206  [Culex quinquefasciatus]
MTKKRRGSPLPGPPGDPLLAKNPFAPLANPGPAPPATVPRKEKLPPFFVRSIEGNLKADLDALIKRGLKATMKLCTDGFK
IIVPSKPHFNAVLEYLRQKKAAFFTHDIPADKPFKVVLRGLYEMQEGELTDYLSDCGLKVVAVHKIRRKETNTRFRDQLY
LLHLEKGSTTLKDLKLIKAVANVVVEWEQYRPVHRDVTQCWKCLNFGHGGRNCFLASRCPNCGENHDQAQCAAEILVAKC
CNCGGDHPSTDRACPKRAEFIQFRKNVAARKNNGRPKPTPINQESFPALPNRNRVPNLEPIPLPGLRPKPAPNPVPPGFQ
RFDPTPGVKPNPPGDGPRPRTKLLTAAELLNTFKIMYAKLMQCQTVEEQSMAVLEFTYQIVYG
>Jockey-5_DAn_gag#LINE/Jockey 363-2036  [Drosophila ananassae]
MEESSARXQSSSRSDKFDKMRQIAGADPGEIRSQIRDRRSELSAYLTGMPEQTRTSSSMVTISSNTTTSVTCTISNANTS
LGNSSTYTVAATTSGSICSTTSPLANVLPSLVNKPSNSKCLFQAPGRTGSRKRKXVTQSSLPALAPPPIRKAKLQTSTPL
NKTADSFFAKALGSNRFAILAAEADQMEQDLEDVDSINGDTGALGGDDHSAKSSKIPAICVPNVSDPVLLENALDHSIGS
SNYYIRTSKFGVSRIYAANSNAFRAAVNELTSLNCQFWHHQLKEDKPYRVVLKGIHSNVPKSQIEQGFTDKGFEVLNIYC
PKKSDWKNIPVNEDDNEATINFKTRQNLFFVNLKQSANVAESLKITQLGRYRVTVERASRRKDLLQCQRCQIFGHSKNYC
VLDPICGKCSGPHATGSLLCVSDTYLCINCGGNHVSTDNSCPVRIDKIKKLKPRPRLPITNPRHVSRGFIPGEALRTNIS
YADIARPKDMQPRTSSTFQSDASSSSDPRLNHKFSIIDNAIRDINSKLDTLFKLMQENAESNKSFRELVQVLIARLPK
>Jockey-6_CQ_pol#LINE/Jockey 1470-4148  [Culex quinquefasciatus]
MGSLSHQLKIVNWNSRSVLLKKIEFFDFLSRHQVDIATVSETWLKTKNSFHHPDYRCFRSDRTSTDDERGGGVLIALRKS
LNVDYSVLDLNTSAIEAVGLEIRFPTQTVHFIAAYFPGIHRGAAWSTFRRDINTLVRRPVPFFVAGDFNARHRQWNCLKA
NRAGNFLASRAVSSDFFIHAPRSFTYQPPGGRRPSTLDIVLSNNLVNMSSLTVVNDLSSDHLPVLFSVDVAVPFQRFPTT
TRCYNRANWPAFQRIVNEKIDLNSPVATNLDSPAGINRCIEFFTSTLLEAEAAAVPVVPVRTYEDAKFPESARQLVTLRN
TRRRQWYRTRDPLLGAIVESLNNRIRFECSIARNQHFSNNIRYLENGAKDVWKISKALRKQVKYSPPLQAGDTLKASPEE
KANLLADNFARAHRNPSPGDPTTSSAVEASVQQIADSTIPVESVPVVRPKEIARIIKSLKPKKAPGKDNIRNTLLKRLPR
KGLVMLTLIVNACLRTSYFPSSWKHAIVTAIPKPGKDITNPTNYRPISLLPVMSKILERVVLTRIGNFVEQRNVVPPQQF
GFKRGHSTNHQLARLTRNVKSSLARGESAGMVLLDVEKAYDSVWQDAILHKMKLAGFPAYILKLLNSFLKQRSFQVAVDG
ALSRRHEIPFGVPQGAVLSPALYNIFTSDLVMVDGVEYYLFADDTGFVAADKSAEVIIEKLQAAQDSLESYQRKWRIKIN
PAKTQAIFFTRRRAERFLPQSRVLALGHEVPWSDEVKYLGLALDPKLKYDKHIDAALQKCDKLTRMLYPLVSRRSRLSNA
NKLLLYKLIFRPTLTYGFPAWHSCASTRRKKLQTRQNKILKMMLDLPFNFPTDELEEAANTESLETWTSKLLQRFWTSCT
MSENTLISSLVP
>Jockey-5_DTa_pol#LINE/Jockey 1894-4442  [Drosophila takahashii]
MITFKISFWNANGISQHKYELMQFLDQYDIDAMLISETHLTNKNYFHLTGYTFYSTNHPDGKAHGGTGILIKNRIRHYEM
PSFATTYIQATAVHLETQSGYLNLASIYCPPRFAITEAEFLNFFDVLGDRFIAAGDYNAKHTHWGSRLINPKGKQLYNAI
ITPRNKLDFISPGKPTYWPTDPNKKPDLIDFAITRRVPQAHVRVEHLSDLSSDHSPILLHLYDHPQVTERLHSLTTGKTD
WLKYRKYVSTHINDRPNISCEEDLDNSVEELVNVITLAAQHSTQPITSNKPFNSRRASRHIEELLYNKRRLRREWQAHRS
PASKERLKIANCMLRKALEAEKNRDELSFMKQLSPNSKRYPLWKAKSGICPPIESESPLHTQTGTWARSNEERANTFAHH
LENVFKPLPATNSFVLPLISNPEASPQIIYHPEEVTRIIQSQDKKKAPGHDLITPKMIVELPNCAIHLLTIIFNSMMNLG
YYPQQWRKSVIIMIHKAGKDKSQPSSYRPISLLPCLSKIFEKLLLSRIKQYLQAHNAIPMHQFGFREKHGTIEQVNRITS
EIRNAFERREYCSAVFLDVAQAFDRVWLDGLIHKIRLILPQSTHTILESYLQKRSFAVRCKDFISDYHPIKAGVPQGSVL
GPTLYIIYTADLPTSTLTTTSTFADDTAILSRSKCPLRATQHLADHLVLLEQWLADWRINVNEQKCKHVTFTLNRQTCPS
LSLNNIIMPQTTEVTYLGVHLDRRLTWRKHIEAKRNHLKFKASNLHWLINARSPLKLEYKILLYNAVLKPIWTYGSELWG
NACASNLEIIQRAQSKILRTITGAPWYIRNENIHKDLNIGLVKDELDKAK
>Jockey-3_DVi_gag#LINE/Jockey 1171-2466  [Drosophila virilis]
MDKMDWQAEPRATQLIKTSSTKRKKTNIRASNPDSENSSCTSEPGEIRRKPVRKQRKQPSRVHLPDGPSTSKAARENLTS
NRFASLSTDEDDEESSASDDSTEVIGLAKGQPNKEPAKEPKTIRPPPIFIPDVTNIKALTNAITGALGKAVEFTYKATKN
NNIRVMTPDKASFTALKAFLNENNKRYQTFQPRDERAYRIVVKGLHHSTELVEIKEGLSNYGHEVRDLYNLTQKSTKKPL
NIFFVNLEPAKNNKDAYKIKRLCCSVVTVEPPLKFNDVPQCYRCQGYGHTQRYCHLEHRCVKCGGGHSTSECSKKSSDPA
FCLHCQGPHVASYKGCPAYKKAKSLLTANRQTAPRDGLPLNCSKVNANISFAKAAKSTYEANQAPCPDSQPDNQLNAIVT
RLEVMFEKMMDKILGQMTQMLETVCSTLCKKV
>Jockey-3_DF_pol#LINE/Jockey 1704-4424  [Drosophila ficusphila]
MSQIGLNIGVWNADGLANKAIELELFVQSHNIDIMLVSETHFCSRSYYNLHGYDIHQATHPADRKRGGSAIIIKSGLKCY
QSYNLQSTNVQCVSVKVTTDHGEVCIASIYCPPNFQCSADDFEKLFDDLGTNFIIAGDWNAHHRLWGSRNSTSRGRALAD
VVQRSNSQVLATGGPTHYPYSQRTPTAIDFAVYRGIRSECLSITESFELSSDHIPLIIKLRVAAQIIRNRPRILPRNASI
PRFQAAVNQLVNLNLVLNSPEEINDAVEMFVRSIHIAAESSTCGQVSSHSNPPQALLKPEVMDLVRLKRSLRRRYLRSQD
PVDKRAYRRAEDELKKLLHQTKREYFDEMLLNADPTKPYGFNLWKSTRNIKRQPLRKIPIKKTDDTWCRSDSEISLAFAD
ELEKRFQPFDLASPEDLEETMAFINAPSPNALPIPHVSPEEVCLHIRKLHISKAPGFDGIDNRIAKALPKKGILFLVLLF
NSMLRIQHFPSQWKCAVITMIPKPGKPENLVESYRPISLLPTFSKIFERIFLSRIMGVRSVQAAIPDHQFGFRHRHGTPE
QAHRVVNHILNAFENKQYCSAIFLDVKEAFDRVWHYGLLHKLKSLLPTGQFLLLKSYLLDRSFMVEVRGERSSIRFARAG
VPQGSVLGPVLYTLFTSDLPSSVEPGTLLATYADDTAFLVNSSCRIEASRITQEFLDSYGKWANRWNIAINGRKSQHCNF
TLRGKVLPRVELHDVTIPQSPQAQYLGLILEKRLTWKEHTKKITATCRSKLRKLNWLLKPTSKLSLGNKVLLYKSIVMPS
ITYCIQIWGMASDTNVMKVQRTQNRALRMMANAPWYVRNDALANDLHIPSIREQINRHSSRYSDRLIAHPNHLAASLRNQ
AIRRRLKRRHPGDLWTRGRMVSRVLKQ
>Jockey-3_DAn_pol#LINE/Jockey 2573-5815  [Drosophila ananassae]
MPKAPKSLKIVSWNAGGIHNKIDELSAFLRGRDVDVLLVSEIRTWTIDIPGYKAYTALNPVSQRRGGAATIIRSDLAHSV
LVPRNEEAVQICPIAVQNVILASIYCPPSVKWQNDDFPRLLKGIDQLCNPQSLRFIIAGDWNAKNQMWGNARSCNRGKLL
AEAVQAKNRYNILATGEATCYPFNKKANPSAIDFAVYSGFLPTHISISSVSELSSDHVPLIINAALGKTPLISPDVEQAA
PRPPPLPRGSHRIKAFRDHLEKYILLNTEINSGEDIEDCVGILLKNIESAALHATPTANNASRYSTKHPSRHTTKLDKPA
SILLQLLQACFSKMKEDPSPENKAKFSRVRNKFKKAIKRLKQAQVNRMLLNLDPEDRYNMAKIWKITRHIKSQPQSDHPL
KIPVQSRSSGHSPASSDHIWTRSSKEKADAFVKHLEDRFSPKMTTLEQERIAIINDLNDFYAHSPSPPSAPIFFRLEELQ
TQIAALATAKSPGEDQIQNALIKLLPKKAVLYLLHIYNSVLRLGHFPHQWKLAVITMIHKTGKPNHCPDSYRPISLLSGF
GKLFERLLLSKLFKCKNFAEAIPEHQFGFRPEHSSEQQVLRVTQHILRAFEEKEHCSAIFLDFSQAFDRVWHEGLLQKLS
KIVPKQLHKVLTSYLQNRTFKVKGTGGIRSRLGSISAGVPQGSILGPILYSIYTSDMPLPDAVPIISRNCTLTPTKLLLA
TYADDTAVLMSHKQPKEHAKHLQAYLNVISEWANKWRMTFNVKKCAHVSFFSGQNMTQTNQTKLLLNGQIIPQANKYKYL
GVTLDRKINMSLHISLLCIRLRARAKSLEWLIGPHSPLPKPTKATLIKQLIIPIWQHAIPVWASLASDSAVMKVQSATNA
IIRRSLEAGRHTTNKVLASTFNIKTLEEIYGAQSARLANALLMHINPAAQHLGLNPVTPVSTKKQRPRLSKQVLDHYNDN
GNGQNTRVPPKSCTIPTLLRLEIKKENEGSNSDVSRTKYVHPNLSSKGIDRLGERAINWTRRSFIHGEITRERAARMVRG
QPLSIRRLVLPDEIILTGEKYFPPPVIDLLNSEGSSSEPHD
>Jockey-3_DK_gag#LINE/Jockey 209-2038  [Drosophila kikkawai]
MDNSFKLKDMRKIXXAGPGEAQXDLSTFLDRLVDXNATNKSSPAEVSSSSESDFDIKANVAAVQKKMRDALNCPVEKFNA
LYASHSEIEADPPAEKPTTSRKAREKASLVNAATKLQASKKNXLPSKALTKLDAAQALDVIKSSALPLWRGAAPGGLIQN
PQPSWQTVPGRPSFKRRAPGADLLSRKLKISKPQMANRFSPLXSSDLAQDMDCEDEDVVVEETSSMAEQVAAAAQPPATT
IYKPRPITVPNVNNIVEMEKVLLQEIEEDGFELRTARSGDLRIYAKDSTTHRAITRLLSANNVIYTHFCLKEDRSFRLVL
KNLAATTPQSLIIQEFTKLGHTVVNLYNPPSRTRSSGTQEKSSDQARQNCWFVDLKQAPNNKEALLIAKIGRQRVTAELK
RDSNRLKQCFRCFGFNHTKNYCLKPPVCGRCGDSHWTGSEACKAVIAADLCCANCGEGHAAYDKKCRIFASLLKRVLPRE
NLPFNNSGRGARRRDTAIPSAMLQPGLSYAQRTRAQQQQPAAHTAAFELPPGFRQASYNLQDDFPVLGSRGRSHNTTAPP
NPDSDWDMTRIVTMLTSLKATVDQLASSLATISLVVRELKRGMPTIHGDP
>Jockey-3_DPer_pol#LINE/Jockey 3141-7547  [Drosophila persimilis]
MFSPVPNGLSNQKVNPVQTISTHSVSQNGNTFKIAFWNACGVTNKLNEVEVFLKREKIQLMMVIETRTRAVSVSGFHTYT
AQNPANDRRGGVAILVRDDVTHSALQPISKPFIQSAPVIVFTEKENKKGIIFAPIYCPPVFKWAPAHFTGLIRHFEELCV
EETASGFLVCGDWNAKHMWWGNARGCARGKALMEAVHTNNGCNLLATGGATHYPYDKKKRPSAIDFGIYKGINDTHLSIR
SSSDLDSDHLLLRVELTIGSGGRRHPTPTVRKHLLPARANISLFQKSLERLINLNTEIRIAQDIDDVVYLFLNNIRVAAA
AATTQHQQQHPNTHRRWPQQRQHHHQQRSQQHHRHHHLKLDEATSELLSIKQQCKRIWLATRTIEARRNYRAAQNRLNKG
LTILKNKNINKLFTGIDNKDRYQMQKLWKLTSTIKRQPQPNWPLRLPTMTGGKASVSWTKSTAETADAFATHLEERFSPI
LSNSDEERAAINREREQSKRQKQLQPDQETRIPFRPVTLPELMQIVDALELSKSPGGDKINNKLIKNLPKKALLYLILIY
NSIFRLGHFPSQWKHAQIKMILKPGKNTADMCSYRPISLLSGLSKIFEKLLMARLFEVENFAKAVPNYQFGFRREHGTEQ
QLARVTQYILKAYEKKQVCSAIFLDISEAFDRVWHEGLLYKLMKLLPLNLYCILESYLAERTFRVSCGDEELSRIGKISA
GVPQGSVLGPILYTIYASDMPMPHLIPDSTGFHPERESMLLSTYADDTVIMSASAIPNVAVKYNQRYLTHFSIWAKKWCI
NINAKKTGHVIFTLRTIRSTDLRQTPTINGQAVPLAKSHTYLGIKLDKKLTLSSHITRICTKLRSRAAKLDWLAGPKSRL
PSETKAIVIKQLIMPIWQYGLPVWGALTSDSQLRRVQSLQNKIIRRAMKATRFTRNDAIRQTHNLDTIDEVFHAASGRFA
NSLACHVNPEARKLLLQPYEPQRLQRPRYLQQLLQHFRPLQPQNQDRSSHHHQHPDPAISEESLPTLVRLEEEELKRKRQ
EESDARQLRRIQQQNIINPNPERFNESMINCFRKRYLSGQTPRERIVALIFGQPLSVQRIILPDYEGDPDPATQQQTQQQ
TQQQTQQQTQQQMQQQTQQRTQQQTQQRTQQQTQQQMQQQTQQRTQQQTRQILASSNRQTSHHRCQTRAASSSSRTLDDS
HRRNPQEALLDHGLEQVRRRLERVVDDDDDDDVQIISDDDDDDVQIITDVQSISDDDDHNNDDDAGRHIAHTATVTPHFG
AARRRSLGRRNPAAASPMFLWWTLSLYLVNVKMTLKFAKLSPPQSNIKRHKTHLKRVQTRLRHRATPLVAPLILSHGRHH
GIRPPEGLRGRESSRLLVGYECQFGHACAAHMAHPNPRRGGFPALHGCWQPSPHKSGRIPGHLEDHGDRSIHSARRCALS
TSPAAPYTRAHPAPYGCAPCQTLCSRRRR
>Jockey-3_DK_pol#LINE/Jockey 2028-4721  [Drosophila kikkawai]
MGTLKVGIWNARSLLANREELLVYLSRHSIDIMLVSETFLKHGVFFNIPGYFLHRADFPGAVTRGGAAILVRSGLTYFQH
NPIRLGLAQMAMITLNSPFGDLDVAAVYLPPRPTWTCDGFEALLNLCGDKAILGGDFNAKHRNWGNFRADRRGTMLVEAL
DNTNTQILATGRPTCFPCNGRTPSALDFALLKGLHGRRLTINESFELSSDHIPLIVNLHLPGSAYVPRRTLLPPGSDVRM
FKRTLEDSIHLHMEINSAEDVDDAAILLEDKIKAAAELAMPPDGSRHSVPRFSLPPEIRALIDTKHRLRREYSRTHEARV
LRVYRRLAHRVRKLLRLLRQERIDKELQEATPDRDTDYALWKLAGQSKRQVTPKFPVRKADGNWAKSPQDRAEAFAESLE
ERFTPFATSSQERTEKVRASLEIPHQMTPPISPILLPEVRARIRKLKNRKSPGADGITNRVAKLLPVKALLFLVLVYNAA
LRLGHFPLSWKNANVVMIHKKGKCCNNVANYRPISLLPTFAKVFERCILDRIQRLPEVIEAIPRHQFGFLKGHGTPEQLH
RVVDFIVEGYQRNQYVVAAFLDIQQAFDRVWHEGLLSKIKELLPPQLFEIICSYLKDRSFQVVQDGVASSTRNIRAGVPQ
GSVLGPTLYNLFAHDAPLHLSSERACAATYADDTAVLARSSCIYSATDKLQILLKRFENWACRWNVAINTEKCAVVTYTL
KRSTCPGVFLHGQLLPQLVEHTYLGLVLDKRLTFSTHIKQIRAKLENTARRISWLTGPKSKLSLRCKTRLYQSLLAPIWQ
YGVAVYGTAARSHLRRIQAFQARFLRRITGAEWYIRNRDIRTELHVPAVGDSINTIAARHRTRLIRHPNPLARALPAARG
RRRLRRVIIRELPTRRIT
>L1-6_CQ_pol#LINE/L1-Tx1 2101-5264 via tfasty with L1-3_CQ_pol, 1 frameshift. [Culex quinquefasciatus]
VDLKSYNFVSININNITSQTKLDALASFMRAHEIDVFFLQEVENDTINIPGYTMLYNIDNRRRGVAIGLKSTVEHVTVEK
SLDGRLIVVRLRNGTTLCNIYAPTGSQNRQSRENFFNCTCAHYLRNLSGPLILGGDFNSIVNDRDATGATPKSEMTSRLM
TSLDLIDVWEGVHRNQTNYTFVRGGSGSRLDRFLVSKSTREHLRTIQHAVTCFSDHKAVIVRMVMPVAGTNIGRGVWRLN
AATMDDEDTMAELQRKWDYLVRQRRNFTSWLIWWIEFAKPKLAAFFRWRSSIQNREYRDSMELLHGELARRYELYIDDAS
QLTRINHIKSLMLRMQRERSNKSRLLYDTYLQGEPTSTFHLAEKSQNRKSTYIHQLEIDGRIIQGPEVVQHAVDYFENLF
SNNIVDFHSPDFVPTCSIPPNNERNEAIFEPVSEEEIIKYIKQSCSRKSPGEDGLPKEFYTKAWDIIKQEFTLIMNEALQ
APDTTSKFMNGIVVLVKKKGTGKDMKAYRPITLLNFDYKVLTRIIKQRITPLVETVLSRHQKCSNGKHNIFEATTKILDK
ISALKFRGQPSMLVSFDMDHAFDRVNHSFLFRVMEQMNFNPRLINFLQKITRNSFSRILVNGNLSRPFQILRSVRQGDPL
SMLLFVLYMQPLVDKIVSEGLAGDALNVYADDLSIFVPDGRRLTQLVNVIKAYEPVSGAVLNLAKTVALKIGNVDTNGIP
PWLNFEDSCKILGLIFTDTVKKSMELTWQNILKQLKWRLWTCKSRVLNLIQKVIHINTFVSSKLWYAASTLPLPKKFETQ
ILKEFRNFLWIGGKQHIRLETLSLPKSRGGLNLHSPGLKSTALITNRMLKNESELDLFRDMRYNTPFFQIPAAYPQIKTT
VLEISTLSPRAIQQPSSFVIFQELMEGECDPAILETQREWRRIFKQLGDQKLDSTLRSNWYCAVHGKIQHNELLHRQNRR
SSPNCDHCPRTVDTLEHRLFECRIVSPVWSYAKTKLNAISPNLRHKRNEYFLYPSFSRLSREHSIQTKLIVAKYLYFVCN
NSIDNISVENFKFEL
>R2_AM_pol#LINE/R2 585-3968 gi|3559770|gb|AAC34903.1| reverse transcriptase (Parascaris equorum R2 rt gi|903665|gb|AAB02297.1| 91% similar) [Anurida maritima]
MNRKNNYTRGNRFSSGSPGNFVVVRDPAQDLPFKCAFCERTFTTSNGKGLHELRSHPKEYNMRVPVAKKRARWSEEELSQ
LAEAEHDLKSKKQYASELDLSRDLEGCMVGRSLESIRGQRKLPRYVEIFNRLSNSRASIPEIGEGDEEANSVGSDEVFHA
SGHGTGITEALEVLVSKRPGEAFREEVLNGIVRAKLEGSEVFVRLEQYLSRMFVGQSSLASTPCSSGEGKLPLTCSGSNK
KEQRSDLFSRFPEKGPSVSVSAPSVSDMGRKRRKALSRNEATQVREEFVEFARNVDPIPRRKCARVNEGLQGNQRLPKEK
PMTARAKMRHLRLLRYRRLQELYKKDRSLAAKQVLQDMLDSKPGRNPEAVKYWAETMGKESTGIDVSVMTGRPRYRDNVW
SPIYPGEVSAAVKLMDSSGATGPDGFSVRSLKCTPSRVLAKVFNLFLLEEKLPAFLMTSRTVLVPKVKEPKAPTDYRPIS
VSSTLVRLFHKILARRLTLASGLDSRQRGFVPVDGCAENLVVLESAIRSAKNYKRSLFVASMDIKNAFGSVAHEAIFEAL
SKSGAPDSFVTYVRNCYDGFASVVKLGRDTAQTTVRQGVLQGDPLSPILFNLVIDQIIRSLPETVGVQLDANTKLNSMAF
ADDLILLSSSEAGMRRMLGVLAGVSSKFGLIFHPGKCKYLAMIWAGKQKKMKIATDLSFEIGGGFMTPVGVTETWKYLGA
YLGQIGIQPARLSLQTFLERIAKSPLKPQQKLYLIRVHLLPKLIYPLVMAPIRASMLNKLDRMVRVALTGKDGILHLPQS
VPSAFFYAPIGEGGLGLMELRTSIPAMVKARFERMMNSTCHHVRAAAKGAANSNRIALANRFLRKTADGIPVTSAKLVKE
YQAAKLHGSFDGKPLSEAGRVKGIHSWTCDGRMVMTGQAFCEALKIRINALPCLSRYNRGTEKPRECRAGCKTTESLNHV
LQVCPRTHDMRVARHDKLVNRLGGYLSQKGFEIHTEPRIITSLGLRKPDIIAIKGEKGVVLDAQIGGAANLNAAHDAKMC
YYSSSPEIKEWVTGKGAPDVSYGACIVSPQGIMSEESWKTLRGLGFSKGMLNSLVVTVMEQSTYVWHVFNRSTASYGWKR
RRKRKWD
>R2-1_TSP_pol#LINE/R2 132-3386  [Trichinella spiralis]
MSNRLANTAAAGGVPEKTSGTLDIPGQPSSSGEKRAISYPGPFGCNSCSFTSTTWLSLELHFKSVHNIRDFVFLCSKCKK
SWPSINSVASHYPRCKGSVKAAVVPTSLANTCTTCGSSFGTFSGLQLHRKRAHPDVFAASCSKKTKARWSNDEFTLLARL
EAGLDPACKNINQVLAERLMEYNITRGVEMIKGQRRKDQYKALVRQLRSNSETQQCVGLAGSMDSNVPANDTSSSVASEV
SITYPEYGAVMSCDLIKEATGMAIVDINELQSNLRKAFLSGRKLPMKFHGARETAQKKMANPRVAKFKRFQRLFRSNRRK
LASHIFDKASLEQFGGSIDEASDHLEKFLSRPRLESDSYSVISGDKSIGVAHPILAEEVELELKASRPTAVGPDGIALED
IKKLNTYDIASLFNLWLKAGDLPASVKASRTIFLPKSDGTTDISNCRPITIASAMYRLFSRIITRRLAARLELNVRQKAF
RPEMNGVFENSAILYALIKDAKVRSREICVTTLDLAKAFDTVPHSRILRALRKNNVDPESVDLISKMLTGTTYAEIKGLQ
GKLIPIRNGVRQGDPLSPLLFSLFIDEIIGRLQACGPAYDFHGEKICILAFADDLTLVADSAAGMKILLKAACDFLEESG
MSLNAEKCRTLCITRSPRSRKTFVNPAAKFIISDWKTGISSEIPSLCATDTFRFLGHTFDGEGKIHIDTEEIRSMLKSVK
SAPLKPEQKVALIRSHLLPRLQFLFSTAEADSRKAWLIDSIIRGCVKEILHSVKAGMCTDIFYIPSRDGGMGFTSLGEFS
LFSRQKALAKMAGSSDPLSKRVAEFFIERWNIARDPKVIEAARRVYQKKRYQRFFQTYQSGGWNEFSGNTIGNAWLTNGR
ARGRNFIMAVKFRSNTAATRAENLRGRPGTKECRFCKSATETLAHICQRCPANHGLVIQRHDAVVTFLGEVARKEGYQVM
IEPKVSTPVGALKPDLLLIKADTAFIVDVGIAWEGGRPLKLVNKMKCDKYKTAIPAILETFHVGHAETYGVILGSRGCWL
KSNDKALASIGLNITRKMKEHLSWLTFEIIFITQISRIYNSFMKK
>R2_HC_pol#LINE/R2 1-1482 (fragment) [Hippodamia convergens]
AFADDVILCGTTSWGLQRNLEIFEEELRRSGLSLNPGKSKCVSLVASGREKKVKLVMTPTFRASGSWLSQVDGTTFWKYL
GLQFRGCGMAGCGSDDVAECLERLTRAPLKPQQRMHLLRVFLLPRFYHVWTFGRLNAGILRRLDIRVRNAIRTSVRLPHD
VPVGYFHAPTNAGGLGIPQLSRFIPLLRLKRFERLAHSSVESVRECARTEPAVAKVRWCRERLADVVDRVADGTQSLREF
WTRELYRSMDGRALRESVRETPSTQWLRCCTRVIPARDWLNYISVHINALPSRVRTSRGRRDGVDVTCRGGCLTAETPAH
CIQVCHRTHGGRVLRHDAIAKALSVHLTQRGWSVRREVSYQTVVGVRRPDIVLLAGREIAVVDVQVVAPNPSLDSAHRKK
VAKYRDEAQLATCLVRGASVQPRRRAEEETQVRFASATISWRGVWSSESARSLRELGLTDRELAQYSTYDLRGSWMNWVR
FGASTSTRMAWRP
>R2Amel_pol#LINE/R2 1096-4494 [Apis mellifera]
MSSNEEGASDTGAPGPGVPVADVSAADGRATYDDHGMSTDYEKQTIELPLNGQIQCLWCHIEGRNQRFLQESQYLKHKDT
QHPKGEIIWRCAACQKEFEKLHGCRCHLPKCKGRKEAKGVAKFKCDSCEESFLTQRGLSMHELHRHPAIRNLKRTQGTSR
GNTRPINRASVWSKEETDLLIKLNERYKHLKQPNVALKEYFPDKTLKQISDKRRLLPVQEPEDVATTDETGPPPSDSSEE
SIYESATEDEGGGDMQQTAPNDSWKEPFIQSIRTNHLEEEDSLRKVEEAIERMAMNEGVTEQEVGTLLEQFVDSLTQSPT
TERKGSRRKSQKTTKRKTTHNNRKKFLYAKHQELYKKSPRRLLELALSGESSSGREVVNLPEADSVGPLYKSLWGQIGPE
KTHRNQPMCNNIDMSEIWTPIALESLVEKFKKIKSDTAAGADQIKKFHLRKKGALHVFAKLCNLLMLHRIYPAQWKTNRT
TLIPKPGKSAEEVENWRPITIGSLLGRIYSAMIDRKLRSKIKQHIRQKGFTQEDGCKNNIAILSSALTKMKEDSGGIITI
IDISKAFDTVPHGEISQSLMNKGVPSPICEYIQKMYIGCKTIIYCRDKKTLPVDILRGVKQGDPLSPLLFNLIIDPIIGT
LDETTEGIKLENENISVLAFADDLVLLAKDKETADKQNRLINEYLDDLKMKVSAEKCTTFEIKRQNKTWFLGDPQLTLGQ
QRIPYADPEAAIKYLGTNFNPWRGLCKTSIKEIIDAARTVKQLKLKPHQKINLIRTYLLPRYIHKLVANPPPLGTLDLID
KELKTIIKEILHLHPSTTDGLIYTDKSHGGLGIQRVANIVKLAKLKHSILMTRSEDNAVKIALNGQEGMVKRYATSIGLQ
WPCGIEEIEETRKKLKRADTNKWKTLISQGQGIKEFFGDKTGNAWLYNPEMLRPSRYLDALKLRTNTYGTKAALHRAKRD
IDINCRRCGVQVETLGHILGLCTHTKNKRIKRHDEICDLIAKNVSKEYVIFREPEVEVNGDRRKPDMVIKDHDKVYVVDV
TVRYENNDSLNKAYKEKENKYKETAEIMRRDLKAKESRVLPVVIGSRGAVPRATIENLKVLGLQTKHALTASLIALRSSI
EMANEFLDYDHTT
>R2A_TM_pol#LINE/R2 1-1410  (fragment). [Tenebrio molitor]
AYADDIILLADNVETAQRLLNASTRFFEDRGLDINPAKCESLVMRTLPSKKKVFTVTTPQFYVKAEPIKPIEVGKAFKYL
GQQFTCTGSTNCSTKDLSEQLLRIKKAPLKPQQKINIIKTYLMPAYIHSMQNPAVNKKILREVDRKIRMVVKGILHLPLH
LSNTAIYAPAKMGGLGMFSFSRKIPIIVLKRLNNLSRTCSNFHLVLREAAPWVNRLKKMVRPDVTTKEQVDRANGVEHEG
SYYGGGTMQCRNDSASNTWINTPPRYWTGSDYVKAVQLRLNCLATRGLPYNPPEQRRCRAGCDRVESLSHVLQKCPLGHT
MRMRRHNYIVKRLKTMALKKGWTVEEEPICDARGVLRKPDLILSNEETALVVDAMVSWECPRDLAETFDCKRLVYDQPEF
TSVLESKYHPRNIRVLPFIIGARGMWCRQSTETLEAMKVNNVSNRRELVHTTLRGSWSIHREFTRRSWE
>LIN7_SM_gag#LINE/R2 8-2323 [Schmidtea mediterranea]
MPKKFNSKLTFNSTGPKSEADDMEPKNCNSNLISEMNRLFQTFINRIMEKNIVQNKNRTSRSKSISKPNCNNDRESKITP
KFKNKGFKIENHLRDDKNFNDLKKCFYNHEKFYKNLENCDLNELIFKIFLLKVKINKFESKITEFKNNFKNEKKDKKKII
NNEDKTTETKILKSFKEVLTNGINKELQSNKKNINNEKKAEIKKDEYYKQNSKKIIRSKTINLDIITKLTDDFFNNLIWT
FHKYDEKEDSIQYNTEILKYVQIKFILMDKNIRMPSNAIKKIENSISKEIFKLTIDNYFNLLNNEIHLNFNNRFKNLKYE
SFLKDFLFIIGLKFKSFLNVFKYLKLSNHININAKKIFRAHQARETNVRSSSTSGRLAENNVKNSEAENIVHNRYNLLVD
LDDDEMGRTNKSFQYKKNPKLTRCKMGSISIPGEMDSTMSYSPIPSNIQLSKINISTSIPSNTGITDCNKSPIPIPLIKK
NLDDILNKLKEDKTKDSKIIDLDTSRIFSETENEEVDRASNIYLERDSDMSLFSQTPSQSENNNALNYRSDKSIIQRVLK
VKQKSLTAGIPPFSRKKKNFFRNIKPEDINSXIIYRLDSKGKVGCKSNWKKPDCGEFPVYDYEGLVEHAMMNHASTFNEE
TLIDCLVCHPKKGKNMHMMTLIRFADIFNHIMINEHQVDIARHDQKKIYLHLTKENLLHCTYRTNNKKILCKKVFNINST
MNDVLEHMAIHTGYCFEQQKKIMCYCGMWKXFDELIKHIKNHSHEXVYKLS
>R6Ag3_gag#LINE/R1 gi|28569875|dbj|BAC57913.1| gag-like protein [Anopheles genus]
MEARKQKPKKNVEDEEHERLIEEFISKLKKSYKKASKAEENEAPRKVSHKAQLERFKNYANNLEIEDLRDGMIAQMIEFM
ESMIKEMSELKKQLKQKSTQEIEVQTAQPSELAEDAPFVPQTRKGRVPKEARKRDNNARQRSAQRETPKSSGGQSKQPKK
KKKKRSLPKPEAVVIEKCENIDLAKVLKGLTHDDALKDVGDQVAKVRRTQNGDMLLVLKRGKEAVRVEAGIKNALKDKAN
VRTLAPSVMIEITHLDEITLAEEIAEALKQQLEIDVDHKEIKVREARTKGTQKATFRVPLSAKERVLNPGKLKVGWCVCS
LREATVQVKCFKCWKLGHKGFECTGQDRSKLCIKCGQEGHKIRECPNAMTCLDCREDMVEPHITGSLRCPNRIARRQQHG
>R6Ag1_gag#LINE/R1 gi|28569869|dbj|BAC57909.1| gag-like protein [Anopheles genus]
MMDFLDEVMSEFRRYRAVNRMQQVLDRQTQTSFDGNDGFGPQTRKGRRPVADDQQPGPSGLQRLQQQQQQPSRLTPVREA
VENIPSPRNGPNINEGSINKRKKKKSKKKQNKPRKRPEALLISDCTSEELAKLLKEMKQSDALKSVGETISKVRRAQNGG
MLLELKQGSSASAIAPKVKEAVKGKASVRTLAPSKMIEIMHLDEITTPEEVAESVKAQLNIEIEIDRIKMKKGRAAGTQW
ARINVSLPDFQSFLNLGKLKVGWSICHIREVMEEQKCYKCWKVGHTSYHCREPDRSNLCWKCGLSGHKKQACTNSVKCLD
CGTRSQNLHATGSYMCPRRRTIRS
>TRAS3_SC_pol#LINE/R1 1-1923 Fragment [Samia cynthia]
GTVKAAIVVYGDKFGVTVDPGLVDKNIAAAVLHAGHLSLGVISVYFEPNEPIETYIVRLERICDKLGALNLIIGGDVNAK
SLWWGSSSEGHRGEAYRSFLDATGLQILNEGDLPTFQVVRGGRLFTSIVDVTVCSPTLLGRIDDWKVDMNLTSSDHNSIT
FSIRVDQPLPSQRPVTTRIYNTKKVVWSEFISTFQEKLSERSLTACNVDKVEDIEGLETVVSDYVICIEEACNKVVPKAG
GVKKVARPPWWSEDLDRLKREATRRKRRIRCAAPSRRQYVVKDYLDALELYKRQAADAQTRSWKEFCTTQERESLWDGIY
RVLRRTERRREEVLLKDPNGVILDPQGSVERLASVLFPEDTVEDETEDHRAVREGTEGILPADIRGLSADDPPFTREEVM
RVCKEIHPLKAPGNDGLTADICTRAILGGGEDVFLALANKCLELSHFPRPWKVAHVCILRKPGREDYCDPKSYRPIGLLP
VLGKLLEKLFVRRLRWHLLPKLSVRQYGFMPQRGTEDSLYDLVNHIRTRVVAKEVVTLVSLDIEGAFDNAWWPGLKSQLI
AKECPRNLYGIVSSYLEDRRVELNYAGIKVSRESSKGCVQGSIAGPSFWDVILDSLLVELDSAGVYCQAFADDVVLVFDG
>WaldoAg2_gag#LINE/R1 gi|28569863|dbj|BAC57905.1| gag-like protein [Anopheles genus]
MSGNESLPPRPLGSALKDIGAFFGRSSKTPRSPPSDLGECSASPTVEVVASTSVDSAVVEAVTGEENVMAAEDSVTSQPV
ESFSSSKEPALVVGGSKLQEALKVAGELHAYTKDRNNVHHPIKKMAVSILSALACVERELMTTRLRAERTEKSLKEALEG
CSQTETPVNGKRGRNLRSTEEADDAKRAKNDAPSGSSLVASAGCGPEMNETKGSWSTVVRKNRRKPKESVIPDNTGEKQV
HPASTREALPPRRPKTEAVLVAPGENITHVEILRKLKADPELQAFGKKVVRIRGTKNGGLLFELGKSDDDCGVDYAKVVQ
NSIGNNGTVKTLGQMETVEIRYFDAETQTSDVEKDLRDLFTELDGVTFETKMTKSFNGMQTASVKLPTKLATLVAARGKI
RIGWSICPVKIQIPKRRCFKCWETGHFSRDCKGPDRTDCDAVKQGILPKHASNLPDVSFVHRVQTCIIPAAFSVQRASRN
RHGDSSVEPEPL
>TRAS_Samia_pol#LINE/R1 gi|12597228|dbj|BAB21518.1| includes endonuclease domain and reverse transcriptase domain (partial) [Samia cynthia]
GTVKAAIIVFGDLLNVIHDPQLVTETEAAVLLEGGGLKLGVVSVYLEGNNDIEPYLHRIKLTCGKLDTGHLIVAGDVNAW
SHWWGSSSEDGRGVAYHSFLNEMGLEILNTGTTPTFEVLRGDRLYTSCIDVTACSGSLLGRVEDWRVDRGLTTSDHNTIT
FSLRVERALTPLPSITTRKYNTKKANWTDFGRLFGAMLEENNISESIRKSRTPEDLEIAIQAYTSAIHEACSTTIPQARP
WKGNPVPPWWNRQLEDLKREVLRRKRRIRNAAPLRKQFVIDEYLRAKLEYAAEARKAQTESWKEFCSTQKRESMWDKIYR
VIRKSSRRQEDVLLRDQVGNTLSPQQSAELLAKSFYPDDLEASDDQYHKDLRTTVEVGQSGFFSEDDPLITSTELDTVLR
AQNPKKAPGPDGLTSDICTAAINCDRVVFLALANKCLALSHFPRAWKVAHVIILRKPGKDDYTSPKSYRPIGLLPVLGKI
VEKLIIGRLQWHIMPALNRRQYGFMPQSSTEDALYDLVHHIRTELQDKKSVLVISLDIEGAFDNAWWPALKLQLQERRIP
RNLYKLVDSYLRDRKITVNYARATYEKGTTKGCVQGSISGPTFWNIILDPLLQLLAREGIHAQAFADDVVLVFDGD
>R2B_DM_pol#LINE/R2 284-3370 [Drosophila mercatorum]
MVQMFNNEPRIAENNSVEYTPTVTRLGDHQVRNADANLQTMFPCRECERSFRTKIGLGVHMRHRHKDELDTARRRVDVKA
RWNEEELSMMARKELELTANGERFINKKLAEIFTNRSVDAIKKCRQRDNYKAKIEQLQGQAALISEANEPPTTQRRPSLS
ELEVTPSSSHSVPIAPPPIHSDDILLQELQGMSPVAVRRSWRVEVLQSIIDRAHISGKEATLQCLSNYLLEIFPNRNDRP
SSATVPARRPRNRRISRRQQYARCIKSLLDGTDESALPNQSIMEPYWRQVMTQPSPSLCSNTVPRKGNMQEGVWSPITSR
DLQVHKVPLTSSPGPDGITSQTARSIPIGIMLRIVNLILWCGDLPVPFRMARTIFIPKTVRANRPQDFRPISVPSIVVRQ
LNAILASRLTAAVSWDPRQRGFLPTDGCADNATIVDLVLRDHHKRYASCYIATLDVSKAFDSVAHDAVFNTVTAYGAPKS
FVDYVRRWYSGGGTYFNGGDWRSEEFVPARGVKQGDPLSPVLFNLIIDRLLRSLPKDIGVHVGNAKVNACAFADDLMLFA
STPKGLQELLNTTVKFLSSVGLTLNADKCFTISIKGQPKQKVTVVEQRTFCIGRARVQLKRSEEWKYLGIHFTADGRARY
NPSEDIGPKLERLMQSPLKPQQKLFALRTVLVPQLYHKLTLGSVALGVLRKCDKLVRSFARKLLGLPLDVSVAFYHAPHS
CGGLGIPSVRWIAPMLRTKRLAGINWPHLEQSEVASAFLSEELRRARDRAKAGVNELLSQPKIDTYWADRLYTSVDGNGL
REARRYAPQHGWVSQPTRLMSGKAYRTGIQLRINALPTRSRTTRGRHEMNRQCRAGCDAPSHNHVLQRCHRTHGSRVSRH
NGVVSYLKKGLETRGYTVYSEQSLHGQNRVYKPDIVAFRHDSTIVVDAQVVTDGLDLDRAHQSKVEIYNRQDLLTTLRSV
YRARENIEVVSATLNWRGIWSFQSITRLRTLGILTAGDSNVISSRVVSGRVYSFKTFMFHAGFHRGMA
>CR1-29_DR_pol#LINE/Rex-Babar 2-2296 Fragment [Danio rerio]
VVYIPPQADAGWALSRLHDVLSGYINKHPDAALIIAGDFNKANLRQVMPNFHQHVSCPTRGLNTLDHCYTQFKNAYKARS
LPAFGRSDHAAIFLXPEYKQRLVQDSPVQRVVTRWSSHSETMLQAALDDVDWDMFRVSSLDVSEFTDVALSFINTLIEQV
TETITIRSFPNQKPWVDKTIRAAVNTRTAAYNEALSSGNMSKYKASCYALRRAVRAAKHKYKERIESHFQLNDSRRMWQG
LRTICTFGNKSSAEVRADPLLADELNIFYGRFDCGGVILPTSASGNVRQGCDDPVITVSEDEVRRALKRVNVRKAAGPDG
IPGRVLRSCAGQLAGLFTSIFNESLATSVVPTSFKKSIIIPVPKTNKPSCLNDYRPVALTSLVMKVFERLVKSYVCSSLP
VTLDPFQFAFRLNRSTDDAISHVLHSSLTHLDSKXGNYVRLLFIDYSSAFNTIVPIKLASKLIDLGLNSSLCNWIQDFLT
GRSQVVRVGQFTSNSITLNIGAPQGCVLSPLLYSLYTHDCVSSHSSTSIIKFADDTVVLGLISNNDETAYLDEVQRLTSW
CQDNFLFLNVNKTKELIMDFRRRQQQPYTPLMISGTPVERVSSFKYLXVIISENLTWTTHIERQVNRARQRLYHLRQLRK
FRVSPAILKTFYSGTVESVLTQGISVWYGNSSNQDRKALQRVVRLAERISGSAFPSLQDIYIKRCKNRAVKICKDLNHPD
NYLFTLLPSRKRFRSLMAKTERLRRSFFPQAIRLLNSNPVLXIT
>CR1-19_DR_pol#LINE/Rex-Babar Fragment; 168-1522 via tfasty with Babar_pol, 3 frameshifts. [Danio rerio]
ADMSKKSAGPDGLSGFLLKVCAEELSPVWCSLFQKSINLKVVPAIWKRSLIIPVPKIASPVDNNDFRPIALTSVVMKCFK
KYMVSVLRENISTKLDPLKFAYSKGVGTCDAINSLLHFVLNHLEGPDAYARVLFFDFSSAFNTVQPHVLIRKLKKLGVNS
TIIEWYHSFLTNRTQAVKVNNSLSQVKYSSSGVPQGCVSSSLLFTLYTNECSSRHSQNLIFKYSDDTVILSLLNKQDPVS
VYFSEIDSFVEWCDENFLKVNTKKKKKMEIIFDPKCVVEHLPVFVHNQEITQVQSYKYLGIYIDRSLTWDTHVNWICEKL
HQRLYFLRRLWFYGVDKNIMYLFYQAVFESVIRYGLSTWYGNLSVNLKSKIFNIIRTATRLIGSETFTSIQTLYEQCTLN
EAKRIVNNPSHVLFPFYDLLPSGRRYRTFRWKRNRFKNSFIPVSIRLLNTEQ
>CR1-38_DR_pol#LINE/Rex-Babar 429-3323 Pos 1-276 appear to contain matches to L1-type pol. Perhaps consensus is an artefact. [Danio rerio]
MTTFVELFIGLLIIGHLFSAGYTHITTNSDLIMVYTREDLLQLRSADFDAPPNLPDCLRNRVTASTCRRKRGHRGGVRRR
FRRRGNRPPLPAIILSNVRSLQQKMDELRIKARACFEYREAGLLALTETWLRPEIPSSLVEVQGFSLIRADRSAASGKSR
GGGICVYVNERWCSHITIKSAVCNPDIELLCLSLRPFYLPREFGNILICVAYVPPSAKAAIAASAIRDCIQDQLERTPGA
PVFILGDFNHCKLETVLSGYDQYVKDNTRDKNVLDKCYGNIKEAYTSRVRPPLSNSDHNTVFLIPTYKTLLKKNKPVVKT
VNVWSEDSVEALKGCFLCTDWEVFHSEDINETATVITDYINFCTENVIPKKEIVIYANNKPYITKDIKDCIKRKKLAFHN
HDHQGLRVTQKELNGLLRDARIKHKQCLENRLHMSNSKQLWDSMKSMSNMQSFTPSISIFDDSQKVNELNDFFLRFENCE
YTPDNSSEVMSPRGVTYDRPLIDPKQINFYFKHIGSNKSAGPDGILPYTVKCCADELTPVWVPIFQKSLDSGIVPSLWKK
SLIVPVPKLARPSEYNDFRPVALTSVIMKCFEKCVVSIVKSEVASNLDPLQFAYRYGRGTEDAVNSISHLILKHLDNPKA
YARLLFIDFSSAFNTIQPHLLIEKMEQLNINPFICKWYFSFLTNRTQVVKVKNICSEEKNSSTGVPQGCVSSPILFTLFT
NECISKHSQNFIFKYSDDTAILSLLYEKDDIGVIYQSEISQFIDWCDRNKLKINTKKTEEMVFDPKCIGDHRQVVVHDDP
ITQSDTYKYLGIHIDSSFTWKTHIDWVCSRLHQRLYFLRRLRLFGVNKKLMMLFYKAVLESIVRYGITVWFGNLSVQCKS
KLMHLLKTAWKIVGHNENFNPQVLYENCVLNQVDRIVKDPTHFLFPQYELLPSGRRYRVPKCRLNRYKKSFVPVSVGLLN
KSIS
>Expander1_DR_pol#LINE/RTE-BovB 162-3353 [Danio]
MSSTTSRTVTSPGMAQPGPHPGARPGVGARMRAPGGRVFSHGTRPGLARRSDVGPSSRRPTTCRGSRKGPVHCGTGGGRR
LGPRQPDRQAQKLALGTWNVTSLGGKEPELVREVERYRLEIVGLTSTHSLGSGTQLLEKGWTFLYSGVAHGERQRAGVGL
LIAPQLSRHVLEFSPVNERVASLRLRVGDRSLTVVCAYGPNTSAEYPAFLESLGGVLEGAQTEDSIVLLGDFNAHVGNDS
DTWRGVIGRNGLPDLNPSGVLLLDFCANHSLSITNTMFEHKGVHQCTWHQDTLGRRSMIDFVVVSSDLRPYVLDTRVKRG
AELSTDHHLVVSWIRWQGGKLDRPGRPKRIVRVLWERLAEPQVRGIFNSHLRKSFDQIPREAGDMETEWSMFSDSIVNAA
VRSCGRKVCGACRGGNPRTRWWTSEVRDAVKLKKESYRAWLACRTPETADGYRRAKRAAARAVAEAKTRAWEEFGETMEE
DYRSAPKRFWQTVRRLRRGKHLHIDAVYSGSGELLTSTGDVVGRWKEYFEDLLNPTDMSFIEEAETGDAGVDSPITQAEV
TEVVCKLRSGKAAGVDEIHPVYLRSLDVVGLSWLTRLYNIAWRSGTVPLDWATGVVVPIFKKGDRRVCSNYRGITLLSLP
GKVYARVLERRIRPMVEPRIQEEQCGFRPGRGTLDQLYTLTRVLEGSWEYAQPVHMCFVDLEKAFDRVPRGILWRVLGEY
GVRGDLLRAVSSLYEQSRSLVRIAGNKSDLFPVHVGLRQGCPLSPILFIIFMDRISRRSLGLEGVRFGDHRISSLLFADD
VVLLASSDMDLQHALGRFAAECDAAGMRISTSKSEAMVLHRKKVVCHLQVGGKSLPQVEEFKYLGVLFTSEGRMEREIDR
RIGAAAAVMRSMYRSVVVKKELSRKAKLSIYRSIYVPTLTYGHELWVMTERTRSRIQAAEMSFLRRVAGRTLMDRVRSSD
TREELGVEPLLLHIERSQLRWLGHLFRMPPGRLPREVFQACPTGRRPRGRPRTRWRDYVSRLAWERLGIPPEELEEVSGD
REVWGSLLRLLPPRPGPGKAAEDE
>REX1-2_XT_pol#LINE/Rex-Babar 11-2905  [Xenopus (silurana) tropicalis]
MAPVRMAAVAQCPPQLCFFLMFVVLFFSFFATCNALISYDRQTLLDIRQNSQSGPSQTEFFVNRGDLPWLPGQKKHRRKR
GKRAGILVRLRNRQHRAPLPSILLANVQSLENKLDELRARITFHRDIKNCNIFVFTETWLVPSIPDSAIVPEGLSIHRRD
RTIDSGKCRGGGVCVLTNKRWCTDVQTVSSGCSPDLEYLMIRCRPFYLPREFTAIFCTAVYIPPHADTTRALDELFDAID
RQETLHPEAAFIVAGDFNKANMKKVLPKFYQHVNFPTRGENILDHVYTPYAHAYKARPRPAFGKSDHSSVLLLPAYRQKL
KREQPMMRSVQRWTDQSDSTLRHCFNITDWEVFRTAADNNINNYAEYVMDFIHKCINDVVPRVNVRTYPNQKPWVNGEVR
AALRARTAAFKSGDPSEYKSSRYALRKAIKTAKGQYREKVESCYSNSNIRNMWSGLKTITDYKGKSCRVGEVTASLPDEL
NTFYARFDKHLSQELLLEEDGRPYQISQADVCKHFRKVNTRKAPGPDNIPGRVFKACAHELADVFTDIFNLSLLQSAVPT
CFKRTTIIPVPKKMNVSCLNDYRPVALTSIAMKCFERIVKAHITSLLPASLDPLQFAYRSNRSTDDAIAIALHTALSHLD
QRNTYVRMLFIDYSSAFNTIVPSRLVMKLRDLNIGSSLCSWILDFLTNRPQVVRIGNITSSTLTLSTGAPQGCVLSPLLY
TLFTHDCTATHSSNTIIKFADDTTIIGCISDGDESAYRAEVRALTSWCRDNNLLLNVSKTKELIVDYRRLQGGGHTPIHI
EGAEVERVSCFRFLGINISEDLSWSHHVGVITKAARQRLFFLRRLRRFGMDSRILTNFYRCTIESILSGCITTWYGSCNA
LDRKALQRVVRSAERITRTELPAMQDLYRQRCRRKMQRILSDPSHPSHRLFTLLPSGRRYRSIQTRTSRYRDSFYPQAIR
LLNC
>CR1-9_NV_pol#LINE/Rex-Babar 95-3220 [Nematostella vectensis]
MWPSNLCLAQTLRFMYYFTKFMTFRWPSNRQFVGVLDGELVGSHAESTNSSSPGRLVYSSAYLKSISKTQKKQVLPKDLW
QELNSLGIRKPFRSKRKRRPLNSGHPVLDSTGILPLSETSAAPPSQTGVGIDYSRIAPAKPSIPNIMICNLRSLAPKVDE
LECVMEHNGVDIACITETWLSDEISDSQVSLKDFTLFRKDRPSHAGGIATYIKSVIPCVRLSEAELSGAVSETMWIHVKP
FRLPRSVSTILIGVIYHPPHASAEDNNMLYSHVQETVDRFLRSHPEALVCVTGDFNPTSTKISPVPFKRSAGLTQTVNVL
TRDTGTLDWCLTNNPKCLQVPKQLPKIGRSDHYGVLIQQAPPSQKGVKCTMTKRDTRDSALRGFGSWITSFSWDEVYCLD
NCKEKFDLFYQILSDAINQFLPLKTFRVHSTDKPWISTKIKSLVARRQHALVRYGKDSPAFKMWRNKVQKAISSAKMSFY
NSKVKNLKESSVGKWWKEIKNLSGVSDDSGQWYLQLVDGLIIDSVDSLCDKINDFFVSLTSGFTPLAQSDVKEIIVDSVP
PDLLATPWEAELALRGIKVKKAPGPDGLPNIILKEFAHELGPVVSDIYNASLVEGSLPSLLKSAIVKPIPKQKPAKSVEK
DIRPVSLTSQVAKIMESFTLSRITPSLTSKLDPKQFALAGRSTSQALVYLLHLALEALDNGNCSLRFFFADFKKGFDIID
HRILLSKLSSYGLHPSLVRWVAAFLQGRSQSVQIANSSSACKSPNGGIPQGTKLSPILFAVMVDDLVRAWGPRVKYVDDL
SILEIIPRNAPSVMRHMVNNVNNFAQNNNMLLNPSKCKEMRVDFLQYNSSQCQPIAVGGSVIESVTSFKLLGVYISSDLS
WSSHCDYVIKKSNRRLYALRKLKSCGVSERDLVSVYCSLIRSILEYACVVFSNLPQYLCAALERIQKRSLGIIFGSGLSY
EDALERACLSSLEARRHNVCRKFISNIKQGSVLYPLVSSRLISSNSPYSLRSKRSHSVVPGRTDRFSKFVSAQYAGDLML
L
>R8Hm-A_pol#LINE/R2 338-3817 [Hydra magnipapillata]
MNLLIVTSSIKESDVPSSGKGGVAVNNITAGASGKDTCVIIHPGTDGIWCCTECVEIHNSGKDLKRHLAKRHPSVTISGY
KCNLCPFVSERQLSVGTHLRYCRGVKEVVKREFACASCSFSSDTFSGLQVHMQRKHIAEWNDQLKEKTEFAWTDRELREL
AEKELTTPSFRYNKIFYAALGTSRTYDAVRKIRYNDRYKSAIAEMRSQIADAAAAAQERDVERGLVSAHSDRGKEMLPVV
ETKSDIQVNNDIKKDIELTPNSRQKQTNLALARPAVIEVEEDLGRQDVKQYLASLRQDDYTSPAERSIFAYCREETNWSA
TKRQVLKISRTTRGLRQPKKVRPFEFPEGFKPNRNMRKWRKYRFLQECYREKRAETVSKILDGTFIDEPEEEIRPELEEV
QRMYIDRLEKRTQLDTTKIVQTDEVFCLQSYGRITIGEVRDALGASKKDSASGPDGLLLQDVRRLGPLLLCNIFNMWYLH
GIPVEENRCRTILLYKSGDRHLASNYRPVTIGNMLNRLYAKIWDKRIRKNVRLHVRQKAFIPVDGCFENVKTIQCVLQSY
RKRKLEHNVVFIDLAKAFDTVLHDSIRKALWRKGVPSGVVKVVDSLYAGAVTSISVGKTKTRSICINSGVKQGCPLSPLL
FNLILDELAERIEATGCGLDLDGHVLSSMAFADDYVLLAKDSVEMNELIRVCSTFFKEKGLSVNPGKCQSLRVLPVKEKK
RSMKVLVRPHRWWRIKDQDVDIPSMTYDSLGKYLGVSIDPTGKIALPIEEWKNWMTKLKECKLKPEQKVKILKEVVCSRV
NYVLRMSECGISELRSWTRFVRNWAKNIIHLPTWCSSDWIHSIKGLGIPDVSKGIVIQRMRASEKMSTSEDGIVRVVGAR
LVQKNRVLWEKAGFEGIELKAARRHCEVERLNNIGNITNGVALKTIAAVSSVNRYWMIEDNLKSGNKILVWKAMAGAIPT
KINLSRGVADQTLKKCRRCGLTAETDGHILAGCHTSSDAYSKRHNMLCDKLAKELKLNGGPNRRVWRERTCFTSTGRRYR
PDIIVKDDSKITVIDMTCPYEKSEGHLIQCESAKVTKYEPLKLDKYWTRELEGANGIVAEKVELMGLAIGAIGTIMRSTL
RKLCELKSGRIVRRLQMIACNNSAQIIKGHLSRATRRNLR
>R2Ci-B_pol#LINE/R2 gi|34392525|dbj|BAC82590.1| reverse transcriptase [Ciona intestinalis]
MGEWPWVSWSLTVLVEKWRPFTILQPYPMPGQLRVDVYLPRKTSYLMDKNIYENTTSPGGGPLCGEKTHRSDVIIPPPGF
APSTDTASNTLGENVDASATTSSANPLSQEPGWCESCSKLFKSQRGLRVHQRSKHPELYHSQNQPLPRSKARWSDEEMVI
FAREEIANRKIRFINQHLHKVFPHRTLESIKGLRGKNVRYARIMADLEAEMTSQPEAATSLCTETSENLASSNVLPQTRG
WAENLVENIDTAHLANLGPLSQFEPGKPSSSTKEAINTEYNDWISKWLPSGAAHRERRANPPSTKLNARATRRLQYSRIQ
NLYKLNRSACAQEVLSGAWKVQSGELNLKEVQPFWEKMFRKESAKDRRKPKPTGEVLWGLMEPLTIAEVGSTLKSTTPSA
PGPDKLTLDGVKRIPIAELVSHYNLWLYAGYQPEGLREGITTLIPKIKGTRDPAKLRPITVSSFICRIFHRCLAQRMETS
LPLGERQKAFRKVDGICHNIWSLRSLIHNSKDNLKELNITFLDVRKAFDSISHKSLGIAAARLGLPPPLITYISNLYPNC
STKLKVNGKISKPIEVRRGVRQGDPLSPLLFNAVMDWALSELDPRVGVQIGEQRINHLAFADDIILVSSTKIGMVSSINT
LSRHLAKSGLEISAGKEGKSASMAIVVDGKKKMWTVDPLPRFKVNSQKIPALSITQQYKYLGINIDAQGARNDAARILTE
GLAELSRAPLKPQQRLYLLRVHLLPKLQHGLVLSSCAKRALTYLDKSVRSAIRRWLTLPKDTPTAFYHAKACDGGLGITR
LEHTIPILKRNRMMKLTLSEDPVIMELVKLTYFTNLLHKYSNVKLLNSWPVTDKDSLARAEASMLHTSVDGRGLSNCSDV
PRQSDWVTNGASLLSGRDFIGAIKVRGNLLPTKVSAARGRQREITCDCCRRPESLGHILQTCPRTWGPRISRHDSLLKRV
RNQACLKNWTPIIEPSIPTNIGLRRPDLVLAKGNIAFLVDATVVADNANMQLQHEAKVEKYNNSDIKEWIKVHCPGVDEV
RVTSLTANWRGCLYGGSASFLTEDLGLPKAELSLLSAKINEKGYYLWCAHYRGTARLWNRPLRS
>NeSL-1_propol#LINE/R2-NeSL gi|17564802|ref|NP_507408.1| Predicted CDS, ulp1 protease family, C-terminal catalytic domain and Reverse transcriptase [Caenorhabditis elegans]
MVMVNSVKWQPSAHAEAIGTGKSWAPQRSQASEHGWQSNAMFDPPNRILFARDSWSLNQSTHLQNQRSGSGLGIRPGQVR
NNMVGGGPHRAGDPKRRVELVSIQGSEVTVRTIYPSDEIFSCYSKSCDIKTKAGYGPEDLKHLTRHIKNEHGLKARWAYQ
CGLCNEKSDPSVSEGHKWMEAHMVAVHQSSAEKRIKSYQKCTGARVAEQLQAAAPSLTVPGKHKSGSRDAAKDSMTPTKD
DDPKTRIYQTRSVVKKSTQKTAEPTDEGSRGPKYASIFQKSVKARKSLALLCELSSPKPMNPLPTNELTLKEGNSRELAK
EEAPSEGIDDIVIIDLDESEESPPRRKRFNTWCLDHESSREAWLDDTAIFWYISYLCRGSTKYSALDPCLWSMYKVKGSR
YILDRLESSITYFFPICEEDHWTLLVLKDNSYYYANSLHQEPRGPVRDFINDSKRARKEFKVQVPLQRDSFNCGVHICLM
TNSIMAGGKWHSEEDVRNFRKRLKKTLQEEGYELYSVNSLGIPFQAPTTEQMDYKETRCKRSYASVLTQISPPAKRPDCK
PDNNIFVPTKDCAAEGNPQEKGRNESPEEINTEHIVVAGKPANNISPRCRSTSEMLFEMVKATTSSGRSSLGTMTQDEFI
RTSTIAEAVPLMSIKLPPMELPRKILPPIPPRKPTQTNGGQKGKQQRVPTGKPDTLNAKVRNWFNNQLESYAMEGRSFQR
LEWLTEVLTASIQKAAAGDEGIVDIICKRNPPLEVAKGEMCTQTENKRKTTNNAARIADPIQSSKGAGDVKASYWKERAR
TYNRIIGSKEELCKIPIDQLEDFFKKSTSRTNVQESIMKEKSSKIPALKIGNWMEKKFIGKEVAFALRKTKDTAQGADGL
RYHHLQWFDPSGELLAKVYNECQRHRKIPKHWKEAETILLFKNGDQSKPENWRPISLMPVIYKLYSSLWNRRIRAVPNVL
SKCQRGFQEREGCNESLAILRTAIDVAKGKRRNLAVAWLDLTNAFGSIPHELIEYALTAYGFPQMVVDVVKDMYQGASMR
VKNATEKSDRIPIMSGVKQGDPISPTLFNICLETVIRRHLESANGHQCLKTRIKVLAFADDMAILTDSPDQLQRELSKLD
NDCTPLNLIFKPAKCASLVIQKGVVRSASIKLKGNAIRCLDENTTYKYLGVQTGSAARISAMDLLEKVTKELECVVKSDL
TPPQKLDCLKTFTLSKLTYMYGNSIPLITEIKMFANIVIRGVKVMHRIPVRGSPLEYIHLPVKDGGLGVACPKTTCMITF
LVSTLKKLWSDDEYIKTLFTSLAEEVVKKESKKSTVTMDDIADYLNVEERINRSEFGYNSITRLRDVMRNLAITGDSPLY
RLKMVVKNGKIALLVQATSESMERIYTEEDAKKLQRSLKDQVNKALKHRFNTTKVVKSKVVRVVQQHPASNRRCGKDLET
QWHILQNCPFGFSKKITERHDAVLHKVKTLIESGGKKNWTMKIDEELPGFSRLRPDICLKSPDEKQIILADVACPYEHGV
EAMERSWQAKIDKYETGFAHLRKSGTKLTVLPIIIGSLGSWWKPTGDSLKELGIKGSVINSAIPELCATVLEHSKNTYWN
HIFGEAYIPNPMRNGHAKPAGNGWKKERLQKAPVRPTN
>Utopia-1_Crp_1p#LINE/R2-NeSL 428..3286[Crocodylidae]
MPTPWQALWLEELSRATTFEAFEASVTRLTEELSAAARPGQPRRGADGGPTTRRDNRPQPQXRPRRQRYDPAAASRIQKL
YRANRPKAVREILEGPSAFCQVPRETLFRYFSRVFNPPAEAAAPRPATVEALTPVPPAEGFEEAFTPREVEARLKRTRDT
APGKDGIRYGLLKKRDPGCLVLSVLFNRCREFRRTPAAWKRAMTVLIHKKGDPTDPGNWRPIALCSTVAKLYASCLAARI
TDWAVTGGAVSRSQKGFMSTEGCYEHNFTLQMALDNARRTRKQCAVAWLDISNAFGSVPHRHIFGTLRELGLPDGVVDPV
RELYXGCTTTVRATDGETAEIPIRSGVRQGCPLSPIIFNLAMEPLLRAVAGGPGGLDLYGQKLSVLAYADDLVLLAPDAA
QLQQMLDVTSEAARWMGLRFNVAKCASLHIDGRQKSRVLDSTLTIQGQAMRHLRDGEAYCHLGTPTGHRARQTPEETIXG
IVQDAHKLDSSLLAPWQKIDAVNTFLIPRVAFVLRGSAVPKTPLKKADTEIRRLLKKWLHLPLRASNEVLHIPYRQGGAN
VPRMGDLCDIAVVTHAFRLLTCPDATVSIIAASALEETARKRIARQPTGQDLATFLSGSLEGEFSRDGGDFASLWSRARN
ATRRLGNRIGCAWTWTEERRELGVSLRPAPHADRITVTPRTRTFLERFLKDAVRNKYAGDLRAKPDQGKVFDVTSKWDAS
NHFMPSGSFTRFADWRFLHRARLNCLPLNGAVRFGHRDKRCRRCGYAAETLPHVLCGCKPHARAWQLRHNAVQDRLVRAI
PAAAGEISVNRTVPGCESQXRPDXVVTDEEAKKVVIVDVTIPFENRRQAFTDARARKREKYAPLADTLRGRGYDVTVDAL
IVGTLGAWDPSNESVLRACRVSRRYAKLMRCLMVSDTIRWSRDIYVEHITGHRQYXDPTRRAAAGPDPEGAAA
>R2I-2_PI#LINE/R2-NeSL 378-5813  [Phytophthora infestans]
MLADPAALAAGLARAPPPPSAPQDPSPAFPAGPAGQNPRAAAPARVEVHTVVAPPGRAGGMLPDPGLVDSSPAAATAATP
APVAATATTARAAARVAVEHHAHAEPNQEHLPMARVLVEPMQVDECSSCDRSTLTADDGSGDDVAAPSSMLSNDVAAPMD
VDSGTSCPPTLQQPLQRPRALHVGSKRRRLDADDGEEAHQLQEEEEAGIHAPALRLSAASAQPASVLAVYTHNASRFDCT
LCAYTAGSFASLLTHRNSRHRRTAFLDRFSAGCACGVPFASRLAAARHAQACASLSSAPSAEASSAAGTSSPTADGADST
VSAVAHAEPGLPHHNDTELTASPPLVSSSDVEVQATKTEATDNRWGAPLPRVLVASRIAGRLAQVPPPRWGPPLPRTTIA
ARIATRLAATPAPRWDPPLPRSLVVSRIAARLLPALPDAPACEEEAKDSDTMDWAPTWTNEETKESEPHDEAPGQVDEET
IDDADGEWLLRFDGACRANPGPGGAGAALFKPSGPVVWTCSHYDPSTTATNNTAEYTALLLGARAAADHGVTKLRIEGDS
TLVIQQVRGIFATRSTRLRALRNKVKLELARVGSFSLHHIDRQANGHADRLANAGLDRRRTKLECSVHPDGRGCTNTSVA
TAAPTAPAAPLPSARPPASTAAPSPDDDHSDQGDIDDGEVYAAMCISPDAVPHRRPRLRLRRLTDEESEEAGNVVERLAA
SLAAKIADAPDWETAEGYITALPYALYDKLQPYSQSQHQPPRQQQQQQRQRPRQQQQTRQRRQRRCKRGGGSQHRQRKTR
RRRPPRVTRHHREHRIDEALDDLHALESRRPQDRTAISKARRRVGRIRSALDQHQLRHRFDTDEKACVDGILAAARDKDR
AASVTTTAQTAAPPHSAPASAPSSAVDDGICPIPGDLLHAFFTDVNTPRTEFDADSPIGARFREALAQLPAAIAATELLM
EPPSPDEVEDQLQRVRGTSSPGLDGVGYDVYKTFTQQLLPALHAAFSRCWTDQRVPQSWKLGVVRLLFKKGDRQDPANWR
PICLQQAVYKLYAGILAHRFTRWLDANTRHADAQKGFRAVNGCGEHNFLAATLTDNARRRRRELHVVWYDIKNAFGSVPH
ELLWEVLRRMGVPAQFIACCQGIYDAAAFTVGNAADGTTAPIQLRLGVFQGCPLSPHLFTAVISPLLHALKRLPGTGVQL
SAVDRPGASAYADDLKVFSDTKDGITRQHQLVTDFLRWTGMVANPSKCSTMSVQRDNRGVLKTANLTLQLDGAQIPALGM
TEAYAYLGIGDGFDHVRRRVELAPKLRELKADTTALMQSGLAPWQVVKALKVYIYPRVEYALRHLRPFQQQLQGFDRHLA
RGLRHLLRLPTSATTEFLYAPTSRGGLGLLPLTEVHGALQIAHAWQTLHSPDPAIRRIARVQLRQVADARHRLDAEHWKE
RGEELCERLLNSQLGTSAHAPPKRRNCDIGSLWVDVQRHLRSLGLQLQTAPADTHTGAPAQPLQLRVPHHDKWLTHKDVL
RHVKLHIKNNHWHRWTSMRDQGKTARAHGGEGSGFLTQPRGMWEADYRFAVAGRLNQVDTYSVLKRRRLRSHDRCRQPGC
HRAETLAHVLNHCPGTMDAVRGRHDGALKRIERELHASATDRRDRVELRVNQTVPSLAGPALRPDLQLYNHTKKTVAVVD
LAVAFEEQASDDASSSALSLIASHKRAKYDRIKRHLERQGWKVHLSALVYGSLGAVASGNYQVYTTHLGLLKRDAKRLDR
QLSVECIQSSRRIWNLHCSQHRTRQHQARPSQGPRGSRATETGGTPSQTSRR
>DMRT1C_gag#LINE/R1 1152-2373 via tfasty with I-1_AN_gag and DMRT1B_gag, 2 frameshifts. [Drosophila fruit fly genus]
GPKDPTPEPERWHPQEAIRSDIPPTRAQPAKRVKTPQLEIEEMGAILDDLLTKVNHNGVRSVNQAMKNSFARLKELQLKL
RTRLPEAENSHVGRTARADASQQTTPKRPSSHEEPSKGPRRKPSDPTTRRQRDPSAYQGLRPKPLQRETRRNQGLQHPPG
PRRKRPPRERPDALVITPSAGLPYSEVLSLVTRGQDARLRAIGENVSRVKRTAKGELLLELRASAQDLTQKLKMDMGAVL
GDRASLRALTQSKVFLIRDLDELTTEDELRRVLESRHRFQLAVVAIKSLRQTQYGGKSAIIAVPANLADPLIKRGKLRVG
WSQCLIKELEPRQRCFKCLEEGHIAAHCRSAVDRSQCCFRCGSAGHKAAECPNEAKCFLCASRGSQATNHQAGTRKCPLA
GKGAPKAP
>Proto2-8_CS1_gag#LINE/Proto2 115-1239 [Capitella sp. 1]
MAGDIVVCELLCFAVNRIDNTSNDIIIKLCTDFYSPKEIEHAKELLHNACSQSRSDLERLRPRKGPKKAQSDMTDILQLV
HEMGTDVPCFVAVNLAKLPVLGMENINLAAMVADIVSLKKQMAELKCFVQRVDTVESNRSPLVATVAAPHIMNPPLDESP
TLNDSDSETDETFPKTIDSCVIQPNADTDIAVNESHREALSAPASQTISSGQQQQQQAADQLTSYVDAVNRDEPFSVVSP
KRQYKKKAFLSGQHAASNPQRGRRTNSTHRASHEDVVIGSGTQTRSLKAAKHNSSTSNSDGIFVSRLRAGTTFNDMRDHL
FRHAGLRLKCVPIRSRNDHLYASFRIVCNAGEMKRLLVPEMWPKGVIARKFVSK
>HOPEBm2_pol#LINE/R1 gi|28569894|dbj|BAC57926.1| reverse transcriptase R1-5_BM_pol is similar and faulty. [Bombyx mori]
MDHTYRFLQGNMNHSAGAQDMLLQTMAEWSIDVAVVAEPYFVPPADDCWFGDVDGLAAIHIRRTAMVPPLAMVTRGPGIV
AVQLENIVVIGVYFSPNRPTVEFERFLDGLEVIARHLAPRSVILAGDFNAKSVAWGSPFTDARGRLLEEWAVAVGLCIVN
RGSIATCVRWTGESIVDLTFASSPVARRILGWRVVVGAESLSDHRYIRYDLSAPAPAPAAGARGVDPPQSASRSFPRWAL
KLLNRELLVEASMVAAWAPKRPQPVDVETEAEWFRGAMHRICDASMPRVGSRHSGRRQSPWWSPEIARLRAVSIRASRRC
TRHRRRRRLRRDEPVAFAEEEARLHREYRAAKDALRLAIRRAKEQNMERLLEALEADPWGSPYKMWADKLVRGKLRPWAP
SMTERLQPQQLRDIVSALFPQEREGFVPPAMGGPSDTVDGQAPAEVPRITEAELRVAVVKMTAKDTAPGPDGVHGRVLAL
ALGALGDRLLELYNGCLESGRFPSLWRTGRLVLLRKEGRPVDTAAGYRPIVLLDEAGKLLERILAARIVRHLVGVGPDLS
AEQYGFREGRSTVDAILRVRSLSDEAVSRGGVALAVSLDIANAFNTLPWTVIGGALERHGVPLYLRRLVGSYLGARSVVC
TGYGGTLHRFRSCRGVPQGSVLGPLLWNIGYDWVLRGALLPGLRVICYADDTLVVARGDDFRESARLATAGVALVVGRIR
RLGLDVALNKSEALWFHGPRRAPPVDTHIVVGGVRIGVGVQLKYLGLVLDSRWAFRAHFAELVPRLMGTAGSLSRLLPNI
GGPDQVVRRLYAGVVRSMALYGAPVWAEPRNRATMARFLRRPQRTVAIRVIRGYRTVSFEAACVLAGTPPWELEAESLAA
DYRWRSELRARGVARVPESELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHG
CFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKAMLDFCECTIS
QKEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP
>R1-1_AP_gag#LINE/R1 782-2170 [Acyrthosiphon pisum]
MSDNNEMEEEAEPSTSQAGSLQRSPPSLGGSPSHKKTKAGPAPAPKARVAIKWIRHTLDLASTRKSAMAVETQRNLFEKL
EELDTAVTDLVIENLQLRSQVEEARRSAEICVGAAASQFGTELRLREAAHEQTLEAVVARYAEKEAIRTHEAATKAREGE
AAIAENIADRHEPDDQTFAQVTKRRQRQPRKEQPPVDRTAARSKSRNARRARLLDESRKEEHQPAFVIQPSDTAKASETS
IGIWKAVMSKRIVPRCHTITTKQGKVIIKPQNKETADVLKSLARESNVLQEEALMWPRFIIRGAPTSMPEDTLQEAILDQ
NPELGIESGCIDRVFKPVFKTGPRDRDDTNWVVEVNPMYYQNVRKIEHLYIGFMRCRVAGYDEVTQCHLCLRYGHPAAKC
NETQQTCAHCGRKGHVAGECPAAEGEPSCSNCHGKHNAREKSCSARTNHLVGRSRRTDYGKTQ
>MinoAg1_pol#LINE/R1 1756-5361 gi|28569867|dbj|BAC57908.1| reverse transcriptase [Anopheles gambiae]
MLPLSGKRPSGARLSISRGSPTGVYSVRRRWSLCQKLHFRDQVCCVQRSPPHWPYLLCSSCSAMPALKILQLNVDHCREG
QALALQAAREHRADILLLSDMHRPPENNGRWAYDVSKKVAVVATGSYPIQRVWGSELRGLVAAQVAGITFISVYAPPSLS
AHEFERLLGAIELEAASHSRVVVAGDFNAWHEEWGSGRNGQRGIELLQTVETLGLSILNQGRKPTFIGRGFAASSVIDVS
FASREIVRPDTWSVIPFSRSDHELIAFEVKQPDENPAGAQQHLSHRPQRSTRKNPAGRQHDRCDSRRWKTTQFNRQSFRV
ALRANNFQERAVSHIGMIEALVDACSETMQRISGLHKSPHHDMYWWTPAIKRLRDDCLAARERVQLSHDLEERSMAAAAH
RTAKSLLEKAIRTSKRQQFQELIDIAETNDYGTGYRVVMSRLRGSPGPPETDRAELERIVSDLFPTHPPVSWPVSSDAPT
TVPSDSRVEPQELLSIAAGMVTRKAPGLDGIPNAAVKVAIEEYTEEFCRLYQDCLSRGTFPPQWKRQRLVLLPKPGKPPG
ESSSYRPLCMLDALGKVLERLILNRLNRHIEQQDSPQLSDAQYGFRRGRSTISAIQRVVDAGTAAKLFRRTNTRDKRCLM
VVALDIRNAFNTANWQAIADALQSKNVPSYLMKIIGAYFEGRKLLFDTSEGPVERHISAGVPQGSILGPTLWNMMYDGVF
GVGLPLGAEIIGYADDLVLLVPGTTPTTAAAAAEEAVAAVKQWLLEHRLELAHSKTEMTVISSLKQPPEEVFITFGGVNV
PFSRSIKYLGVRVHAHLSWVPHVKEITLKATRIVHAVNRLMPNLHGPRTSMSRLLANVADSTMRYA
>Proto2-4_CS1_gag#LINE/Proto2 216-1292 [Capitella sp. 1]
MRSLSNHPTPDLQLVRSELLCYAFTHVNSNTKHSLTECISEFYNAEQIHTARELLWKEYEQFLITVMKKTRRPQVPYDKE
TARPFADDISQWVFMIANAPNDSSFCQFYALDLTQVPPCRPEEVNIFSLVSRISALEKNDRDRQSMENIKPQRLQPSHPI
SEYQPHTDQQTNVKIPVPVTASSAPPEETWAKVVNRNKKRIQKATARKEVRAAAKDLHVVVGTAGAKDVKACPPLKHIFV
YKVSRDCTADSIRTLMKSNDVDPINIRITSKPSWLSSSFCISIAKDDFSKTFSEGFWPSGIRCREWISHVHKDRNNSNFD
ATDRAANKDLDDDVFTTPAGGAESLGGFQKDNTNNHHG
>Poseidon_Ac_pol#LINE/Penelope 1-2541 [Anolis carolinensis]
MPAIDVGETSGENASGTWPHSPKDIQQPCDPGHESLRQHIEHLYGEKLFQDTRRLEKLRTRKAHLLCSLTFLLRCRDTDT
IPQFLAAKRTFKTPQAHRIYNRLERNLLRERIHTIRKELANTDKELLHLHINISQKMNTQDWDKIDSLTYKKMEKDMVLH
TKRQKQKFDKCRKQQPKPELDKSRTIINLTDRQLTEDQVSILEKGGNFAVTTTRIPVENIIANVESAIYQLPEEEAEEVR
METARILRNAKLPPSNITRKERQAIKDLNSDPEIIILPADKGNATVIMETKQYKEKIRQLLDPTIYKKLKQDPTNKITRK
TNTLIKNSSINFDIRQQLCKSEALPPRLYGLPKIHKDSIPLRPIVSAIGSPTYNLAKFLATQLQTHIGLTAHYIKDSTHF
IEKISNLNLSTKDILISFDVVSLFTKVPVADTLTLIKQNFPEDITALFHHCLTTSYFQWDTGFYEQKDGVAMGSPLSPVV
ANFYMEYFEKQALETAPKKPTVWFRYVDDTFTIWSHGEEELSKFLDHLNSIHPNIQFTMEKEKEGKLPFLDVLVIRKPNQ
QLGHTVYRKPTHTDRYLHKNSNHHPSQKRSTIKALTDRAQRICEPHLLQGELNHLNWALQANGYSTTDIRRAARPRTSHE
SQDKDPPRGKVFLPYIKGTTDRIGKLMKKHNLQTIYRPTKKIQQMLRSAKDKRDPLSSAGVYRIPCSCGQVYIGTTKRSA
QTRVKEHERHCRLIQPEKSAIAEHLMNQPGHRILFENTKMLDHSNNYHVRLHREAIEIHKHVDNFNRKEETMKMNKIWLP
VL
>Perere_Smed_pol#LINE/Penelope 1-2523 [Schmidtea mediterranea]
MIAVLSKYIVRKVFYWRYRLIKSLPNLFNYLFINHAAAVPIFKRFMKVYNSLKRKELDISFLETCLEEKMIPSFIYKMKL
SDCLSSKDVQLIHRRTLRRMLESEKIRRTSIDKKLTNIGLMLNNATNEFCLQVCVEWCIKNSIVQIKFKENAHIKKLINL
RKIFGISKFSVENTVINLSKIVLNDDEERVLKFGPNHCIKNRLDETKLCAKIESLYFHIARSMKGINGNYVKSSLSASTM
EYIDKNKKQNIRDFMTLKNLAKKNINICKFDKGNGIVILDHDVYVNKLNDLLNSPQFVKLPKGRKNGKLPPLKDEEFVQK
MLNGFIEKKLIDEEVGKSIRPIGSQPAKLYGLPKIHKDGVPMRPVLSMVGTAQYKIAKFLDGLLKPLMRSEFECKDSFEF
VSCIAKLQKRSMNDVMVSFDVCSLFTNVPLVETIDLCCALWNENDSEHHILDRRAFRKLLEFATSNVNFLFNDEWYQQID
GVAMGSPLAPTMASIFLASLEKKIASFQFEKPFVYKRYVDDIFLIFENQKHVEPFLQFMNSLHKNIVFTCETERKSSIAF
LDLLIQRKDKQYETEIYRKPTDTGLYTSPESFCEFKYKRNMVKGLIYRSWALSSTFANSVKSVDKLVELLIKNGYSKSFL
LLMIKETVDKLIKNPKDPCCGKSECNLSDGCELSVDLGDCKNGYKKIEPKYVLVLPYSEGFTNYKRKLGKLIGNLEYKIV
SNSCKVRNMFINKSKTPVGLCSDLVYQFTCNGCNATYIGETSRHLCTRVLEHCRLKGLTNISEHNRGCKSDIGMSDFRIL
LR
>Proto2-1_CS1_pol#LINE/Proto2 1402-4287 [Capitella sp. 1]
MLMTPSRLLMLLLLTILIMDSALRLCTWNSRGHGADRLIYINKLLQQCDILLVQETWLHDWELNKLSDDDAISILGVSGM
DPQQLLVGRPHGGCAVLFHSSLKISIASVQTNSCRMFACVVNVINSIKFLIFNVYMPCDSVTNVDAYMDIMNEIESIISV
HQDIDNVIIGGDMNVDLRRTRSANLRALENLCFNQSLLFCQSFDQCHVDFTYENEATGARSIIDHFCVSENIFNSIVHYL
AVHEGDNLSDHAPVFLDIKLNLCNVTQSVSTSQNRVSWHRASSRDILAYKEMLSVCLEGINVPYEALHCVNCSNFNNDCL
IHTHSVDKYYDDIVRAMRSSAEVTIPVCKKRGKAGWSTHVKQFQEDAIFWNRIWVENGRPTTGSLSNIRRSTRAQYRRAS
RWVVRNQDKLSADRMAQALASNNSRDLWGEVKKKANKVRDKPIIVDDADGELEVCEMFKVKYESLYSSVSFNENDMNEFI
DQVTDRISTTCAAGSCYHNHFFSVDNVKSAVKMLKSGKSDSECNLSSNNYINGCDSLFVHLSILFNLMFARFSSPNEMLK
SFLIPIPKNRKKSLSDSNNFRSIAISSIMGKILDHIVLKVHSNVLSTSDLQFGFKSNHSTTQCTYVLNEVIEYYNSRHTP
VYTTLLDASRAFDRVHFIKLFNLLLFRGMCPALIKFLVHMYIRQTLLVRWQNTVSAPFSCRNGIKQGGVLSPILFCVYMD
ELLMRLKKSKIGCYVGHVYCGALTYADDLTLIAPTHSAMSHLIEICERFSLEYSVKFNSTKSHVVLFNNSSRTHCCQPFY
LHGQPIEYVTNALHLGTLIGKDTHAKNLSKLSKDMIIKTNVLYSHYKHCSPDVLCSLFKSYCTSFYGSPLWSLSNINDFI
VCYKKCIKRLLNLNLRTRSKYVYLLMHQPDLDTQLMYRFSSFWNNCFKSDNVLIQLCANLSLTSNSVVAKNLKKNISIPT
M
>Proto2-1_SK_pol#LINE/Proto2 1480-4317 [Saccoglossus kowalevskii]
MNSLTISSFNSRGIKSSVNDVRSLCNRCDICLIQEHWLCTSELGILSRIHPDFNSCGESAMDEFNNLRVGRPFGGIGILW
RKSLDHVVSIKRFDDPRVLGISIECNNNTSILIICIYMPTDNSDNFMEYLNYLAKVKSIIHNSNTCNSLIIGDWNANVTS
PFGRELINFCNENNLVLSDYVHLHTHGEPFTYYSESHGTTSWLDHCVSTINAHDGISSINISHDVISSDHFPLTVRLNID
KLPTIETRRLCGVACNTDNVSVNWDKISSSQLNDYREMSDRLLKEVTIPIESISCKNANCHVASHRDDLHTFYCDIITAL
NSSTRNIQHTPRNKSVNLVPGWNEAVKEVYDASRDAFKRWVSFGKPRYGPIYELMRKTRAQFKRVFRACRRDEDRIKADK
IATHHCNKDFSKFWKEVNSDKVNQFISCCVDGQSTEVDIADMWKDHFSSILNSVKNCESRDSVEASLGNIMFHPSMIIQV
AEVKEYIMRLSGRKAVGTDNISPEHLKHASDSLYVLLSLCLTGMLVHGYLPNELLETIIVPIIKDRSGDITSRDNYRPIA
VATSMSKLLELILLKRLEDFITTTDFQFGFKSNHSTDMCVYVVKEIIDFYKSHNSPVFLCFMDASKAFDRVNHWSLFKKL
IERHVPLFIVRLLMYWYNSQQFYVKWGSVMSDSFGVSNGVRQGGILSPFLFNLYVDDLSIELGNISVGLKINSMFINHMF
YADDLILVSPSIKGLNFLVKKCENYANEFDILFNFKKSVCMYNLPSQCGIKRVPNVYLNGKPLKFVSQYCYLGYHFTQDG
KDSICMRKQIRGLFARANFLLRRFSKCSLPVKCTLFRSYCSNLYCSYLWSDFTVADFNRIRVAYNNALRIICNVSRSFNS
SITETFARLHVDDFQVKLRKMCYSFSQRILLSKNSVLINLLSSDIFFKSRIWQMWRGRFYLRHTV
>Proto2-1_SK_gag#LINE/Proto2 173-1483 [Saccoglossus kowalevskii]
MVLRCNDCTCGVLSKQVTISIGDLQLCGKCTDKRPDGLTANNDVECVQEYEDDGHKAIVVNELLCFLSNKMDSMANDMLI
KLCVDNFSDHDIEIAKRSLYEHCGSSTRFIRRQGHNKKVNNLQDTITLFHEADIHTLPWFVARDLSKLPPIDFNHVDVSG
MVRDLKFLRQEINILHDSLSQSTNCALSVASLERNVCELRSDIANIKAKVASNDTCSSTVPKSRDMSLSEDNGCVSHKVS
PEKEMAGDPGIADGLIDNVLIGETHPSIKSYANAVITPSTGENVKQTRLRSKSLNAISQPTILESQPGGPTRQPIKSSGL
LDEYGFTTVTRRRKKKPPVFTIGEGNCNSDLHVVIRSQLPAKIFVTRLAPDTTESSIVKHIKKTVNIDAKCEKLRSKFDT
YASFVITIPRDTVSSVMQPTSWPAGVLVRKYYQSRS
>R1-1_DPer_pol#LINE/R1 1855-4815  [Drosophila persimilis]
MKIIQLNLNHCEMAQQLLDQTIREHRIDVAVISEQYRNRNSGEWIADSSKKAAIWSCASPTQQLLQTYVGDGFARARING
VHIYSCYLPPSLSLQQATQALERIAEDAREKHPTLIAGDFNAWATEWGCPRTNPRGQALLECFATLDAVLLNTGTQQTFG
RAGTGSIIDLTFVSSSLSRRTTWEVSGLYTGSDHQALICEIQEAGAPNPFIGKRIGYKTETLEPDMVRAMFEDYETNGTA
EERASQLAIHTLEACDASMLRKRRSLNNRRPAYWWNAAIGSARQECQRKRRLYQRSRGSPEFERLQGEYKESRRCLKRQI
KDAKRKCFEKLCDDADANPWGYAYRLVMKRLRVFSPPPPMCADLLVNIVETLFPEKVAAQRVMDRIPPPEIEATTGAEVL
EALQRIKNGKAPGPDGVPNAVLRTAIETNPQMYVDLFNACMSEGTFPRPWKRQRLVLLPKGNKPTEEPSSYRPLCMLDTV
GKILERIIHTRLEKAVTRQLSPRQHGFRKGRSTVDAIGEVCEIAKRAIDGTRWMYGTKEYCIVATLDVQNAFNSANWDHI
LEELRNFQVPPYLQNIIADYLRDRXLIYETDKGTREHQITGGVPQGSVLGPLLWNIMYDGILKMDMPMGATVIGFADDIA
IVVVAKQKEAAEEICNDAVERARTWLSGRDLALATHKTEAVLISSRKVVETATIRVGDCTISSSPSLKYLGVMIDHRLSF
KHHMAYASSKAGKTAVALSRIMANTGGPKQPRRKLLASVVGSTLMYAAPIWVDAMKHKTYARECNAVQRLCALRVCCAFR
TVSQDAALVVAGMIPIHLLAREAAGIRAQRTLGTTDQDTRGALRQRTILQWQDSWDNSSKGRWTHRLIPDLKSWLNRSHG
QVEYHLTQLLTGHGCFKAYLHRFKHEDDPFCVVCAGVIEDAEHCFFECPRFRQEREDLSNKLGRMPAVTNLAECLLESEG
NWAAIRFMAVTMATKLRREERARNARR
>R1_DWi_gag#LINE/R1 424-1896 [Drosophila willistoni]
MDGSMKRSGSTISVMSASSVVESARSATSCVESAAESMNVTGSDTVDESGAEMTVVVGKREKKARKAKARSARSSPVLEQ
VAPVAKKPHLDSVSMPAPAAPPVKPAKRKAAAAAASPEAVESPAAGPADMEIPRSGAWRIVAGGSSAILAEIGASGQAIR
NAMIGMEPVAASQLSSAIRRLEELATSLTLRNALLEAAASKPAAQPPTTPVAAHIAAYNAAFPAVTARAAAVVPVPGVPV
AAPRISKPAETWSAVVTSRDPNVSSKQVAERVMKEVAPTLGVRVHEVRELRSGGAVIRTPSVVEIQRVVANKKFAEVGLN
VQQKKAARPSLKVMEVDTKLTPEVFMQQLYENNFKEMTVESFKKAVHMVSKPWVAQEGKRVNVSIEVDDSIASLLEGRER
FYIQWFSYRFRWIVRTHVCHRCAGYDHKVAQCGATEATCFRCGQKGHKIWKCENPVDCRNCRFNGRPSGHLMLSLDCPMF
AAKEARFAANH
>R1_DM_gag#LINE/R1 319-1734 [Drosophila fruit fly genus]
PVSASIRLLDSSKGGATIGATPMESDSSVSALSGSSASKVSRRGRRRSHLASKSSAPTQAKLVALASNGVPEPVGVLEEA
FSSLEDARAATSNAANDAAPPAAAPAVDHTVAPDVSTAAKIAATTATAATAAARAGQAAMMAELSATQRMVRNSFRSLGG
VDTEELSCAISRYDELVMALMLRCGELETRLAMPPPPPPPSKANTTAANAPQMPQVAPIAAPRTTKVRETWSAVVKCDDP
ALSGKAIAEKVRTMVAPSLGVRVHEVRELPSRWWCDHSYSSVGELQKVMASKRFAELGLNVARNAAEKPKVIVYDVDTAI
GPEEFMQELHENNFDSEMTLAQFKKSVHLVTKAWSATDGATVNVTLEVDDRAMAKLDVGRVYIKWFSFRCRSQVRTYACH
RCVGFDHKVSECRQKESVCRQCGQQGHTAAKCQNPVDCRNCRHRGQPSGHYMLSNACPIYGALLARVQARH
>R1A_DAn_gag#LINE/R1 612-2087 [Drosophila ananassae]
MSAMSAMSALSESELSASSRASSRASSAIGAARGRRRGRKSKATSLSAPTQAKLLAATGADRPEPVGVLEELALSSLETP
VMPATSAVDASAATFAAPAVVAGVVADAAEAAAAVAAGAPAAVPERSAVSMRSLDCIIKNGADGVMEEAASIKETFVSLV
VESLMNPQQATALMRCISRYDGIVQALMVRNAVLEESSKLRAAMPLPPPPVQMPSVPQAVVSRPPVGYASAYPSLPAPSA
APVPAPRKPRDTWSAVVMSKDPKLSGKEVAEKVRREIAPSLGVRLHEVRGLARGGAIIRTPSSGEIKRVVASKKFGEIGL
EVKPNAVQRPKLVVQDVATQIAPEEFMAELYANNLREHIPEAEFRKAVHLDTKPWTVADGATVSVTLECEPKVLDLLEGG
RIYIKWFSYRCRALVRTYACHRCVGFNHKVAECKQKDNVCRQCGQSGHSARSCTNPVDCRNCRFYGHPSGHSMLSPSCPV
YAAVLARVNSRH
>R1E_NGi_pol#LINE/R1 3936-7070 [Nasonia giraulti]
MASTINVLQHNLGRGKTSTAELRDAAAAVRASVLLVQEPHAREDIGVIGLGSLSNKVLTGAKTGERPWACVVITDRCLDV
VVIPHLSSPFCVCAHVSTAVGDFHVVSAYFPPSQPLDSHLRMLGRIHDGLRSSKVILGIDVNAWSMRWGSNTTDRRGQEV
EEFLATTGWLVVNEPGQLPTFSTANGESHIDVTLVGAGLSNLIREWNVREGWTSSDHRVIQITLGSPEPRQLIRIPRYNI
KRANWEGFRGNVISHLDTLDQAVTCSEHLERAATSLGEIFHQASATNNNIPRKRHFIRSVPWWNRELTFWKRRVNRARRA
FQGARRSSGAPALRRIYSVLKREYNKKVYLAKTGSWREFVTLDGNEDAYGVANKIIRKRFTPDTALSSISTHGGATLDWQ
DTAEKLLDALIPDCPPGDRMDLRELCLSFPEGEAEACPHWTAGEVTRVIKSLPRSKAPGGDLIEAAMIKSLANSPEFIEA
LVGLYNKCLDIGVFPCTWKRGLIRVLLKSVEKDPADPGSYRPICLLPLFGKILEKLIKLRLSGVLNHPEYASANQYGFRA
GRSTEDALYELRRNVNSSSKKYALALLYDAKAAFDHLWWPALIRELQQRGCPNNLLMLIGSYLSGRVVELTGSYNSLEKS
VTRGCPQGSILGPDFWNIVFDTLLKLLEGLNLNIKIIAYADDLLVLVESDSRRMLEVGGQEVTDTVQDWFVRNKLILSES
KSEMILLKGALPSRDPIIKINNRALALAESVKYLGVHVGERFSITKHLLAAGSKCRLVFDLLARSARANWGLRFRSLDIM
YKGIFLAVMCYGAGAWGDLVKTNQHRQTLLTIQRAILLRVTKAYRTTSGDALCVIAGAIPLDLVIRERMILYMIRKNLEA
GFGRYWFLPGSSKVEAKRGLREAILREWQMRWETSSKGRETFAYFPDVAKRVGSDWVKPGHYMAQALSGHGDFNAKLHSF
RLKESPLCPCGMEETSSHLLFDCELWNDIRSEFVAKLEEAGLEWPPQRQRLMDKDVYQIFDGYVTAVLREKAARAAAGQT
QAANN
>R1B_NVi_gag#LINE/R1 610-2376  [Nasonia vitripennis]
MTNKNQASDKTKEGKGGKENVRRSRRRVSSASSASSGDRNRTPYRGPRSRSQSRSGTGLRDEPSDALDPKSKKEHQRREK
AREKDLRDQELERAILKERGMEAGKVTEERGMETEEGVMETEDIPEPTAQPENEVIVEEKEEYAVKNKRTLKRKTDAEEK
RLSDEDKKMKKMKNRQKRAEARAEITAKLKEEAKDRQRKKVDKRDEKEKSLQLLKELKEATEKLAGMKDVNLIETESDGE
SEEEDGEGRVKESVHASALETVGQLANEIRLFMLSQLNVNKSVCVTVFEKLGKMEQIMNGLVCENEGLKSKLECMGAKEG
ANANVGASSASAAVPRAAPATPAVRPSYAVIVRGKENESSDMVRKKIVDEVSKNVDVRVKAVRKVRDGVVVETVSVNECN
RLLNEKQFERVGLQVTEARRFGPKVILYDVPCSMTDETLLTEVYQKNMDGCVSERDFHESVKVLFRSGKKGMDVSNVILE
VSPRVKMRLLGQSRVYVKWMSFRVNEFERINRCFNCFDFGHVARQCKRERVCVRCCKSGHVGSECREQFNCGNCARRGMP
AGHPVTSSECPGYKMRLRWQKERTLQDGE
>R1-15_DWi_pol#LINE/R1 2601-5567  [Drosophila willistoni]
MTPKIKVIQLNLNHCIAAQDLLHQTIREVSADIAILSEPYRMESIGGWVSDSTNKASIWTCSALQAPLVNVRSYDGFVRA
QICGSYWVYSCYLPPSLSIARFGEVIDELVDDARGRXPVIIGGDFNAWATEWGSSHTDRRGRLLLEALTTLNVSLLNTGS
KKTFNRAGMGSIIDLTFVSDPLVRFSNWKVCDIYSASDHEVILFSIGRSTPSHHTTVSEGAFRVDTLSIPAFCGNLLFNT
SENSAENMANSIMHSIETACNASMTRRKLFKRPYAAVHWWCDNIAAARRACFRARRLFQRSRGTESFESLRLEYHSKRLD
LKHAIRTSKRECFLRLCDSAEHDPWGKAYQTVVKRVDVGKTSIPSDAASLNQIVSSLFPQKQAQPPLATRSSEIEITACT
KTELLEIVNKLNNKKAPGPDGIPNRALRLAVNLHPDVFIKMYNACLREGTFPSRWKRQNLVLLPKPGKPPGEASSYRPIC
LLDTAGKILESLIARRLNKAIEQGGGLSPNQYGLRKARSTIDAISTVVDXARDAISGNRWKGGTKQYCXVVTLDIRNAFN
SAEWSRIMGSLASFGVQGNLLHIVDSYFTNRRLRYSTVDXSEEYSISAGVPQGXVLGPXLRAYDGVLRLNFDPGTRIIGX
ADDIAVVVTEKELAAAEXKCNNAIATIGRWLAVAGLELAAHKTEAVLISSRKKVETASIEVGGKTITSKRAIKYLGVMLD
TRLCFREHLEYTCXXALXSARALARIMLNTRGPKQERRLLLTSVTKSISLYAAPVWASALRVKSYRRGLESVFRLCAMRI
CSAFRTISDDAAHVIAGLSPISDLAYEADAMYRALHSTPVVERSPLASIRQEIRGEHVARWQQRWTESAKGRWTYCLIPD
LQQWIGRSHGQVTFYLTQILSGHGCFRAYLKRFGHEASDECTWCGAGIVEDARHIAFHCPRYEAQRRELESRIGTRITIE
NLVPLMLENGRAWEAVCEFAAAVMVDNGD
>R1-3_BM_gag#LINE/R1 1-2267 via tfasty with SART1_gag, 1 frameshift and 3 stopcodons. [Bombyx mori]
GGGTSCSGKESEKDGEKRKRSTRDERETVQNEDRRRESSVCSEDSMVVSSCCSSPKRTTRKRAKGSKNASSDSSTEXEAS
RSGSLVSRTRPSKRGRGRPPTTGQYVGLAAAKQAHLKAQREELELRAEQEVVESVHNLREKRRAVHLISGNITADPATRL
QETAQMALTIAAKARNPKGTYIKALKEMATTIKEATEDLASRSANEETLRLQALSERQEAEILQLRKEVEDVRAEMVRLA
QTTAQPTPAPTLPNEDDERRLQIIMRAVGSMLDARLAGLEARLLPEPRLRPPLAADARRRSRESEIDPDTAGLVSEATPP
YAALPQLETNKKVKPKKQKGNNKKTTPSAPPEPPAPPEPRAFPPAPAALTVSWATVARRGARPRREKEPAPTTNAEGQRD
RNPAPLKPKKKGRKKRLRAPRSQAVILRLHPEAIEKGLSYREVLAEARASIDAGALGIPIEKVRSAITGAKILIVSGEDQ
IAKADLLAEKLKEVLSSKRVTVTRPMVTAAIRISGLDDSLTEEGRYAPSLRASAGDIVRGGEACALIGEFAPSVAVKAGT
xSLYQARGSGGVDRQGHAGRFSAFQVLARNPIAAVKTIxLHRDRYSDEAAHRVERPCRGISxSTCWKMARSRLQCFRCHS
PLQPPAARRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGCTLAPRCAVCASAGKPADHTSGGKACARPPRKPRREDV
AAPAAAPVAADRSQLGETTTPMDVQPPSGTRKTGAL
>R1-2_AP_gag#LINE/R1 762-2123  [Acyrthosiphon pisum]
MSTHSLEDITQEPQSPLPGTSQQQMRSPPSPGDSPQTKKPKGLPTPGPVARVTIKWIRHTLDLASTRKTAMAVDVTRNLF
SKLDELDTAVIDLVIENLQLRSQVEEARRSAEICVGAAAAQFGTELRLREAAHEQTLEAVVTRYAEKEAIRSLETAPVRQ
NVTEEQMCTEEPPTFAVVTRRKQSRTVDRIADRSRSRATTRNKRIRETRQAEHLPSFILNESPGKSNTEVRDLIWNQVVA
KNSRPKCHTITTKTGKTILKPSDKETVDALKYISKVSTLLKEDSLRWPRVIIRGVSSDMKFDHQIQQCIIAQNPELGFDD
NEDEMVIKPVFKSGPRDRSTTNWIVEVNPKHFEKFENTTIFLGFMRCRVSAYEEVTQCHLCLRYGHPASKCLEKDCVCAH
CGRKAHKAADCPAAEADPVCINCRGKHSARDKTCSARTAFLVNQVRRTDYGKSQ
>R1-3_DBp_gag#LINE/R1 216-1568  [Drosophila bipectinata]
MPTGGVPAGEDKETPKRTREQSSPSEPQRSTPAKRTRATTEQPCSSMLAELEAILEDIIQQTHEKQVRSINLKMKRMFCR
MKELQEGLSGILSNPSDAGTTAAAAEVVCSRCGQADTAKTDQRTQTLLTRRKEAAAQTDPWRRLSQDSAAPPPRGAPLAS
AKAPKIRAREGPTXRTSSHPDXRTAGVGGQSTAAXTAAPGPGWETATRRKPRTSTRPDAXVVEAKGXKYSEVLALVTRRQ
DGQLKEFSQNVHKVRRTATGNLLLELSKNRVDSTDAMRENLEKVLQGAAEVRALSEDSKMKYXEIRDLDPLATEGDIRLA
LAEQFEVDGKSATLRSLRARSRDTQTAIIGLPSKIATAVVSKGRVRIGWTVCRIRERQSQPRCYRCLEVGHIASQCRSPT
DRSGCCIRCGKSGHKIANCPNESTCYVCASKGEKEAKHLAGSRRCPHSNGA
>R1-4_DYa_gag#LINE/R1 655-1770  [Drosophila yakuba]
MDGPAGGTAPDDVVDPFKRSARMSRSPSKGVGITEITERAVMPVPAAVSVAQAVPQTLTSTPSIGGATAAEDLAPSTSLM
NRKKISDLISVPSQYAPARTPPVSPSRPLDLSAYKNEDLSSILGMMNSKIAVLLSAFETQRHVTRETKGVISELAALNAR
AIQLQEAKAKEAPAKSTATQTEAQPKPASAPAASKRSAPAKPPQKKLLVSKDAILQTHKVNEPVPPSFASVAKEGNKNSE
WTKVAPKRLRKKPEAIIIKKTGEASYTDMLRKLKADPCLSELGSHVKKIRRTQQGELLLEVEGKAAASMSEYRGAIEESL
REMAAVRTGARRMALTCSGMDEATTATAAQTGITRQVALHALPLKRAQQKEP
>R1-4_DAn_pol#LINE/R1 1959-4899 via tfasty with R1-3_DBp_pol, 1 frameshift. [Drosophila ananassae]
MEVIQLNLNHCRAAQDLLRHSVVEARADLAILSEPYSVGLGEEWATDTSGKAAIWFCNGTMEAPSRVKRGEGFVRAQWKG
TWVYSCYLAPSLTHDAFCKVLEEIVIDARGRHPVLIAGDFNAWAQEWGCSTTNARGRALLEILAPLDLALLNEGNQETFN
RAGAAFTASDHEAILCTLVAGRADPNPPYSGKAYRQDTLDVQTVINRAQSATVVPLASANETAAALAEVLDEVCRASMRP
RTTYSRYHKPTPWWNSEIALLRKECLKARRALQRERGTDAQEERRLEFKAARKALKKAIRESKREVFLKLCDEAEHDPWG
QAFRIVTKKVRAGNQAPSDPEELRGIIDVLFPNEQNEGSRPNLNENDEAESVNDEVESVELVTADEVRKAASKLAPSKAP
GPDAVPNRALKIILALIPEKMAVIFNQCLLEGTFPAIWKMQRLLLLPKPGKPPGQAASYRPICLLDSVGKVLEKIVATRL
QAAISRVGGLAAEQYGFRKGRSTVDAIRRVKDLAARAIQGTRWEGGTKKYCLVATLDIKNAFNTANWSRTLEALRKMKIP
RYLLRMVDSYLSNRTLLFDTTEGRKEREVTAGVPQGSVLGPLLWNVMYDGVLRIPMAEGTSVIGFADDVAVVVVAKTVRE
VEAAANRAIEKVEAWLSTAGLQLAPHKTEAVLISSRKKVETATVRVGGVAITSKRAIKYLGVMLDTRLSFREHLEYAHKR
ASETIRALSRMLVNIRGPRQERRKLITSVVSSQILYAAPVWAEATSVRAYVRGIEADYRLCALRTSCAFRTVSDDAALVI
AGLIPLRELVRERSELAETAQDETTSASARKLAARARSLANWQILWANSTKGRWTHRLIPDVGLWIGRKHGEVDFYMTQA
LSGHGCFRSYLKRFGHEREDGCPSCGRGVMEDAYHVLFDCRRFDEDRSNLEESLEEIFSPERMVPLMMESGRKWEATAKF
VAKVMKELRALERVRNGGED
>Tad1-18_BG_gag#LINE/Tad1 87-1781  [Blumeria graminis]
MPPGRRKIPTTLVSPARVVSRAVKRARPRPPLPTVQEEVILAAAAEKQQSPAEPIYMDSEDEFMDLGLETEFPSNSSSEN
LPLSPTPAPVSVTAALSHSQKKPLRRDSTQGLSSSIHASTEDNVATEKQPSSTLPRSSARTTARTIEHPSAAMTNNIAAS
LLAWQNAGAQHLRGLPPTIAADLKAIVTRSAARVIAGLPVFEQSQTAPNVKVGAQPAPQPEPPASSTYANAAKKNLSVPA
HLPKATPRVTSPKKKNRPDSRVMIRLAPDHPLRFQDSLLVRTKLRSFLEKPELIKDIRSVPSGLALVAPSSDQAPELMQA
ALALQPATGVVPIERQEKRENFLLSPVPKYGYNASGSPEALSDAEIREELAAAKIDTKSIFSISWTRNSLASPEWEGTLR
LVVAKPAADKLPSSVRLFARSAKIRPADNRPRLQVCQRCHGYHNINACTRRARCGLCASDSHKGPCTSPIKCLNCAGPHV
ASSTGCPARPFRANGVFVRPDKERMRVMRQEGHKSWLALNPPPPAPEPPAGSPSTQPSCTTIPTPILTIGSASRFAPLIS
LEESL
>Tad1-1_PPl_gag#LINE/Tad1 143-2009 via tfasty with Tad1-1_GLuc_gag, 1 frameshift and 1 stopcodon. [Postia placenta]
MASSGGKPTPGGSQARRVTRNSTPSIGNAGSDAAYRAALEKIDNIESAVELLESKELIPGGQPPSLLMIRDGLLHLARSA
APAAITMECLVAFSRIADAVDTDQITSEVANQVCHKTMVAYNILDEGIDKLEHTRTELEGCVNRAKEQVRDLDQYRKDIQ
VEIVKGVEMLADASRQALKELQQSANPERLxRSPLWKDLADRELLTYAAAARRNVPAAHARVIARGDARRRQVLIDRDPK
AVGDGSLALSERELVMKASIALEQMGEDGADAPEGGVVFRSARRLRNGGVIFEMNTAEAASWLRERDVMPKFISFYDGGN
SVAKGNKYPIIVEFVSTDFDPSSEHEVRKIETDSALMAHAIQATRWLKPTNRRRPFQAVAHLFMSFGSPEDANTAIRDGL
IVEGKRVWARKLLPEPRRCLRCHQIGSNHLAADCPKERDTCGTCGKEHRTAECTVRSREDRYCVNCEAAGHGAWDRACPT
FRAKYATFPRNRPEDEYCYYHTSDPRTWETNANQPQYEIEQENLPTNEPTPLAEKPTMSQRLQPSLITQGSSQQRRKDPP
ASRPSQKARAAAATAGRTYQATLDRYSLVSGRQRDNGWGDRARRQTPELQNDNDSDAHTSLT
>Tad1-18_BG_pol#LINE/Tad1 1781-5446  [Blumeria graminis]
MRDRNRNRRKQKTPGLCFFQINVGRRASAHDAALELASKCGANVVLIQEPWVSTDLSRRLTKTHPRFQCFSPLSNWNIRP
RVMTYVCKEQGLSPFQPALHSRDLLQVVIPRRNKRALACWNVYNAPIGATDSGEGLKYLINSTGSPDILAGDFNIHHSSW
DPKSRTDSVDGDSLLSWTASRGLRLLNHEGAPTHDAGAAIDLCFVRNDVNAFCEIRQDLEAGSDHRTLLCQVNNWEVEIP
APGKLQLASCNWSIFEGLLENHPAVAPSQTIEEEASGIVSAISGALRAACPRSRKQVAKAGWWTKECTEAHLSFCRARRT
GLPAVSERRAFGKVVRKSKRAYWHHKIEQVSSLKEAYQVVRWHKKVPHYHTPPLESPTGLVFRPEDKAQLFKETLLSRHL
NQVDIDNTAPVVAKRSISWPPITDEEVYNSCCVVSISAPGPDSITTTVLRRAWPLIGARIIALFRWCDQQGLHPSVFKKA
NVIIIPKSGNRNRALPKSYRPIALLSCLGKGLERLMARRLSFLALKLQILSRDQCSAVPRRSATDLTTALSCDIQDAWSK
KEVAGMVTVDVKGAFDGIQKGRLCHCLRGQGWPNNVVQWVSSFMSEREASIIVDGTTSPTFEIHCGLPQGSPASPILFLL
AIEGLLNLSPKRFGYADDVALMASAPSLTRCSELLQKQLDSTLAWGRENGITFEVSKTELQYFHRKHGSPAEPSVYANEV
EVTPNDHTRWLGVIFDRGLRFREHVRQTCGRSLAITSHIKSLSRTTRGISPLLLRQALQGAAFTTLLYGAETWYSKGTPK
GLVLRIQQRMNDAARAALPVFRTTPVAVLLRETGWGPARAWLERIQDRLAVRIASADPRHPLRRRWNSTRMLWIRQRISP
ELSEDTIPPPWKVNRDTSLEKIGAVGRNAGVDAFSGWFVLQSLLDLTVFSDGALIENRAGAGYSIRRGASHEIACGTIPL
GTSAEVYDAEIAGATEGLAAAIRNPMAFYATNVTVCLDNQEAALRLLLLPPTATSSCQIMKFRKLAASWSERKRASCTMV
GTVSVRWCPGHSGIPGNEAADSLAKSACLIPTSSLPLSIARAKRKVAQLYKASSDAFWEREAPARYKELGIGPSSGITQE
LKSLNRRTFGALIAARSGHGDFALYHRRFAHEGALMTCSCGEEKSPDHFFFCTIGRNRARLRGGPRHPCPGIKWVLGTPK
GALAFGKWVEVTKFFDEIQRAH
>Tad1-24_BG_pol#LINE/Tad1 1463-4837  [Blumeria graminis]
MKGTNTWNIIQYNVNKSKNKVQHHFLQELNPEEHHIVAVQEPWRNPLNNLTLKHPGYHLVSSNKPNSRTCIYVSKRLATD
KWRVETVPEEVGGDITSISLQTEQGKMRVHNIYNPPPKSHSSTELGTLQYIPQMLAQDGQHVLVGDFNLHHPRWGGQATT
THHRSSETLLKILHEANMELILPEGTITWKSRGSQSTIDLTFISKELVNTIIACQPANNLESSSDHIPIGTQLRIQPITQ
TTPEPQPQWKRVDWEAFNKRLAAILHQTTETNLLDSHLAIDHRVTTITKSIKQTIEEMIPRAVPSQHSKPYWTKECSVAV
KAARMARRKWTYTCNEENWTKYQKATNQKKGTIKKAKTVGWRAIVAEATDDPNKIWKLAKWARRSSEGNSMPALIPDIKG
NDGYTATEDKEKVMIMAGHFFPKPAQADIDDIAGTKYPEEIDSISCTITEEEVDRVIRTLPSNKASGPDGIPNRVLKECR
KTLGNLLTTLFNACLAIGYHPKGYKESTTLVLRKPQKPRYDTPKAYRPIALLNTMGKILEKLVAGRLSKAAEHHNLLPDK
QMGARPQRSTISAVELLTEQIHTIWGKDKKRVASLLSLDISGAFDNVSHERLIHNLREKGIPKWMSLYIKSFLEDRTTSI
MLGSFKGDRMSTSTGIPQGSALSPILFLFFVSTLLPMLETRTTTAVGFVDDTNILTWSNSTEENCRKLEEKHQVCEQWAR
RHGVRFAPEKYQLMHFSRARKRHNLKATIEIQGHTSVPQPSLRVLGIYFDPKLRWGAHIKSLQLRAEMQVQGLSRLAQST
WGATFHKSKILYSTIVRPALTYGSPVWAEVGPGGKIPERIVRPLRSIQRNCLKIVTGAYKSTSTRVLEHETATLPIEIFL
KQQRLQYLGRTKDLPVQKTIQSACNKIKLPRKGREDVRTVNRRIDLANWTGMCGEQQSKKTHTGIVKIRAYQEWAKSWAK
QTQTQKPRRLATADPETWRAATCYQSRESGRQKLSFQGSPFFLHRNLTRAQSSLAMQIRSEHMGLNSYLHRRNVPGVLSP
GCPCGYQSQNPKHMIMSCPQWSNGRAEIWRQAKDRSYEAMLNNPGDIKRITQWILNHGWIEQFQMTKAVEILLRERKRSN
NAGRG
>Tad1-21_BG_gag#LINE/Tad1 116-1978  [Blumeria graminis]
MATGPTKITRPARQHKAMEKIKIRLQQRLDARNLSIETIDQDKMESEMTERLRVFQEDSNSTNPDAEMGDVVIDQYIIEG
LDKSRWNVAQKNDDVVPVTSVIPSTKKIAAPAVKKAAIPEVNKANQATPAQIASTPPSVATEKQQPSCSESRKQKINGCP
PELQAMIEAEERRAAQAAKNIMICTAAINAVETAVSLYSEESSDPFIDSMKIYLRAAVAQFMKSGPSAAPPVLPQRPSCZ
XNXSCPTXKAKERTPMNGQEXXRXVTQAKXTWATVARGSPQMSIAPAKTVRVAPXPAAQVKKQARPATAKPKDVRLFLRL
GEEHAWRALSPAGVRDAVTRLVEVSSSNIEHVYRVPTGFAMKAKNEEARQLLLNAAESFSRVEAKLETASDLAALRIATV
PVALYTLMGKVTVTEEMVAEEITRTTKAVPVRVRPLGKGRVGAPYQTWIAHFERASAPRPGFRLFDDSGIAVRHKPKQAI
SQCKRCLQFHGTRGCSRAPACWNCTSTMHSSAECKAHTKCRNCGGPHRSDSRDCLARPTKSGPASKENLEAIRQASQREF
AAVARAKSAVRRAEAAVSAASEKAKIAQTGFXSSNCFEVLMTDSSPSVTKVTEDVNREESL
>Tad1-1_GLuc_gag#LINE/Tad1 2-1651 [Ganoderma lucidum]
MSQSRPRMTQSPLAAASQPTKKTTGAVARHSKTSSTSADIFADASKKIQSLEAAEHFLRQHECIPQAGEPSAEALVTGLL
HLGTALGGKSMLATEGLVAFSIYARAVMEQAVSAALASAVLTKLEVQAGSVVKAAVSQFEAKTQALSDQLLSTAKDAMKG
AGEALREAALPANSGVPSQPPLPSSYADAVRAAPMGAERATQITVADRENIRARQILVDGFPIEELGEASHHEAALLATA
NEAFDFLRGTHEDLPEGTSFIAAKALRGAGVLLELPNADMAAWVRAHGADFERVLGVDARVRPRQFKIVVEFVPVAFQPQ
DDTLWRMIEDEHAFEAHTIQEARWIKPATRRSPRQRFAHLLVTLSDPESANKLMRTGLTLAGKHVTARKNLTEPMRCAKC
HRYDAGHLARDCTFEREVCGTCGGPHRTSDCTETSEDQYHCVNCSANGHATWSRHCPAFRERCQRMNARYPENRLRFFPT
ADPDSWTPQLDRAPALWDLVAQGLGEASQCTHPVRPSQRERASAARASRHLTQSTLPFASQQARLSTGNA
>Mars1_pol#LINE/Tad1 gi|1435079|emb|CAA67543.1| reverse transcriptase [Ascobolus immersus]
EFFDKYLADTGSNILFDVLKMTRPKRSHLIPTLHTETSVAVKFGEKAALFRKTLFPPPPAYAPSMTPPLQPSYEWVPVTD
DEIKAILFACSPKKAPGPDGVNFACLRHAYTALPSWFNMLYRTVLNLGYHPRSWREATGAIVPKPKKADYTAVKSYRIVS
LLNCMGKVAEKLVAFRLAQLCEDKSLLHTGQMGGRKHRSSQDAVMALVHDIELGWSRGLTSSALLLDVKGAFDNVSKVRL
LESSGMRIPKPLVEWVSSFMSDRLIALAFDGSKEELQPVNTGIPQGSPCSPILFLIYLKPLFNELERHKLNIQTPSYIDD
VAIMLTGKSTVKNAATLQKAAVIAFEWARGNAIAFDDSKSELIHFANTNKVPTCPMVLPNGTELRPLPSVRWLGILLDRK
LSFRPHVENRIAAAGRALSSLLRLSTTEKGLTLSNMRQLYQACILPVIDFGSEVWWKGYNQDYLVKRIQLVQNTASRRIL
GAFRTTPTDLLDVEAALFPASIRLQYNQRRYAVRLLRLPESHPVVQRCPELFHPTADGITDKELGGAPWHATERTKWRYP
SRLIRVAHSIHHLLLNGDTEELSAPETGTFPANLELSALPTAPIRPGYLPVPYTPPTSKSEAAVAHLELLTTLNPRKHLV
FYSDGSKLDNKIGAGVYLRPSRAIPAESHSFSLGSTSEVFDAELQACYYACVRAKALARRNRTITDCWVFLDNTSVIHRL
RHTSPTAGQALAIGVHEVRTPLTTWE
>I-1_AN_pol#LINE/Tad1 1581-5141 Forms group with CGT1 and MGR583  [Emericella nidulans]
MKILQANIGRGGAVYDLLLSFEADIILVQEPWTNTAKHLTKTHPQYQLFSPPTRWTARPRTLTYVQRDLPAHSLPEPISP
DITTIYTAGLTIINVYRPPNNPVAPAGAGSTPSTLSTLLGYAPPENTILAGDFNTRHPFWQPDTESHAVTPGATGLLDWL
DAHELELRLEPGTPTRGPNTLDLVFSNLPLRALVEDHLKTPSDHATIGIILEQEEPPPIYKLGSTNWEKARALASPPDPT
LPIDLLAKQLVQISQLAIQGASRYNTRRLPRTPWWTPELTDILHQTRQQQNPDYKQLRKAIVQAKAEYWKQRIEQATAPI
DAFKLAKWIQYPDQLAAPPLNIQGAQVTTPQGKADAFLNHLLEKGALLPNQTEEGPPNKPLGLLHLPTKEHCWAALCAPP
PSAPGEDGLATTAWRELWPVLGDTITQLYYRCMEEGCFPLSLKSAKVIMLPKPGKRGYTQLNAWRPISLLSTLGKGLERL
LAQQIAVRAIQADVLAPCHFRALPGRSAIDLVQVLVHRVEEAFQQGKDASLLLLDVKGAFDAVIHQQLLSHLRLQGWHKG
LLQLLKDWLTGRSVSVHIKEGTATAPIKGRLPQGSPLSPILFLLYAARIVSTLEGSFCYADDMGILLTGNTLEESSQQLV
EAYKQITALGTETGLPFSIEKTEIQYFSRKQQQHLPTVTLPGIGEITPSLYTQWLGVLLDTKLTFKAHINLVFSRGKRLA
QHLKRLSNTQHSCPVASMQAAVIQYILPTALYRAEVFYTGKRQKGVVNSLLSLFCTAALAIIPAYKTTPTAALLREADLP
DPEALLNSILQRAAVRYMSLDTKHPIAQIAAETTAGRPKTRLKRILQLLLSPLPERAIIELPLPPLCMLPTDNKGYSPAP
LQISVYSDGSRTSQGAGYGYAIYFGPILVTKGHGPAGPRTEVYDAEIMGAVEGLRAALGQPCVGYSTQLVILLDNLAAAS
LLASYRPTPHRHGLSETFSQLAAQWMESPSILTMQRKPLQVRWIPGHSGIAGNELADKLAKLGSSIYSPDIPPSPAYLQR
EAKQWLRTETYTAYANKAPETYKALNIRPHTKESRSREHKLPWWVLGRLVAARTGHGDFTAYHQRFNHSDYLESCSCGRT
KTPVHFFFCPYTRKRWKDRWRCIRDGPSKTIDWLLSTAAGAEEFSRIVQESSFFKDICPNWARRSA
>MGR583_gag#LINE/Tad1 110-1822 [Magnaporthe grisea]
MASPEVSNRRARPQSTPHGLPQGQAESGHVSLDTRTANAPQPAGRGRYSTVPALAIKTLQQELENVETVGSWLEEVFAAK
LESLQAPEDAALRRIVLELDDVISGWFLSRTLPEKERSRSPSGSPTSSSERRSILITRTGTASSASKGRGTPTNKSVTWA
ERAATPPAAAPTRILTPATRSYPIRTTPGNAPDSSATPSQSGRDRSQAPKRLTEQPSNRILIRVNDKLRMVTREPYAVTT
KLAELVSVPHSEIPNAKRTPTGWGVTVASEETRQKLLNPSAVKAIMDALDAREVTVPTTWHTYAVSGVPRTLNCLDGRKD
VHEVIQEEITVAAGQQPVNWHISKHGYDPHTAEGTWIVSFLQPVKPFQLFGVSKRARKVEKSRKITHHHDGCQGYCEIRR
CVRQARCGICGEAKHATEEEPCKAAPKCVNCHGHFPSGHENCPARPLVVNGKLERPSQRKLKGIRRIGRANRAAIINDRA
ETARREPAPAIPVLSTSSQHSQTSSSRSSISNKRARPCEAAGADIRNFLQVEQERVHDEIVWAAEMEEDAAAAEPCPADG
IDLEATRRLI
>Tad1-1_EP_gag#LINE/Tad1 89-1882 [Erysiphe pisi]
MTEPPPHHTHPPQVTREKTMIEAHANGMNFTPGQTRASGNNYVEEHRANENGNHGTTGATNLFTTPGFTTHSNQTQQLAF
QNDVSMNGIHELLQGMYKALTEKFVMEISAMFSALKAENTSVKKELEDLRREVRSTFMAQNINLRQNGNSTQDPKKNPPV
TSQQTKEAEIGYDLPTRPPASRTVKDVPKLTQPAVPNKIPTMAQVAASKVLNASKPEEWTNVSRKQYRNHGAHKSFPSPI
KSVEEPKRRIIFTRQKGISGNPATVCQDILHAINMKLXGMRAPPHLRLXKLRYNERGNLXGLTSSQTTAEAMVTXFGEEL
TQTALRFDPHIQDVAANQQWISLEAHGVELGRYYPAGGLNQIKEEVAAGPSALELPFTPRWVSSPERLTEMARNGVKRHS
TIRFTVRTLAEADRVMKQGLHFGGRFHKVERFIPIGPDTICSTCCHWGHTTYGCPTPDKVRCAICAEAHLTEHHKCPISM
CKTGTGKFCSKHGTYKCANCGGSHTARSPSCPDQRQAIAIARSGREEWREREKEHDIRRSKLEKEEDNISEYSENSEMDI
EEVTQGQTQKDLETERNVDPFESSQDDQEQTSSLNSCD
>Tad1-1_BG_gag#LINE/Tad1 702-2258  [Blumeria graminis]
MTSNPRSSSVELPSSPPTKKSFDFKNVARLSDSIWSSKRSTKANLLKSTQNNFTKESLDGPFSSDPITAQXLIPEISKTK
LMPITQKKRKCIEINPTVVQATKVMRIAAPKITNHYTYLSAIQEARDLIVKAYHLTNDKQKQDAVLDLVEVFRNFTETGR
ANLEKIDKTTXNSATPSTPTTXTIPVSPNHQIAPKKSTSNSNSSTITYAEILRNSTPAAPVNLPPKPSNSMKVLGKPLXQ
DGQSKANKQDEVIIESVQKTAGTTLETSTTAQVHDDNVITLVTKTGKTLPNYVSFTIRENINKILGKRAISRVHTSIKGN
IVLTCMDSSPSELLLDQEKWEPVFEGWPIQKAQKVSHWPKVVVHGVPTCVPIDVINEEIEIYNKGIKTQGQPRWLSRTYQ
QRVRASLTFSVTNDAEKEQLMKSGVLIGGQYLKVXEYQIATQRTQCRKCLAYGHHQMSCXKTPVCAICLGQHMTTDHKCK
TCNSTQSCVHHAVQCANCRSNTHLAFQRQDCDFFKALAC
>Ylli_pol#LINE/Zorro 2554-6453 RepBase name: L1-1_YL gi|20513185|emb|CAC85650.1| reverse transcriptase [Yarrowia lipolytica]
MSFTSTTTPSKAPCKSTQAKMKSPNVKVITANIGGFKMAEALNRLPDTIVNIIRTTHYPDLVLLQETNWVDSSLQTAQQI
ISNSPYPGGRHYTLLGSTAGVSNRSVGVGLVYSDNVTITNFTTVFEYFPALDNRLCLADVHIKGTDRHLSLINVYAPNEQ
GASPFTNRQFYQSLDDYLRLQPCQYPLIAAGDWNAVASNDGRIGEKVTTHLKDFLANWDLLDTYTLISKHRKGLYTHTNN
SRGAGRRLDQLHISSTLSQWIKSTQLVTNKQGHNITKSSHHAVQFVFNFGNLTQRQDRGPGTWRMPWWVFDTEYIAWLKF
HVKSILKRYGPLKPSLKLQCLKENIKVTIQQEAKNRALRDSNHPDNRRREALMATASDWQAYPANEPYPMLHARVEQSKQ
QMEIHSLRNHQGRVKTDTSSLCDISARYFDNIFDRAADINDTDDSAFLDLFPEETRRVNTANPSLDSSFTKEEIFDTIKA
STHNSAPGPDGIPYRFYRDCWDELGDLMTDVYNEAGADSPISTERNTAIIKLLYKSGDQADISNYRPISLINTEVKIYTQ
LINKAIQNILPDSIHGAQNGFVPGRHITNNLDTMDHFCNAYSQLNMGWVVGSLDFRKAYDTISQSWVIKTLRNVGVSELM
INRILAVQQNAVTRINIRGVLSRPVRIKIGVRQGCPLSPTLFIIAVDALVRRLDREMFGLAPGLPLSHHHTTGHRPPQPP
THPEAVAAGHMKVSAFADDIAVFLNNIQDVATVGRVLCLFQRVSGLTLNPSKTVLQKIGPPDCFVPLTFIDAEWQRTIDA
TWPTDNNTRQAPTLRTSDNIFRYLGVHFGNRERLDTHYAQIKEDLKESLRRLSLWGLPYYSKAWMINIYFFSKLNFLGPY
VSQIDNTFIRELNELACDKINKLSPDKTRKTFSNGFIQTPVGRGGLNLRDMGRFMVCLKAARAYRFFHGSSPALWDCTFQ
FYSRTHSLTQEKPHQRVDCRFPTGQAWGYAASPTMRDAIRASFELNKPLTAEHANPREDHEPSTTDTVNHRIWERNQVNV
RAAESFREAHVDIAAARRYHPVRMVSTAEIDHLRWSMGPLTLENFMFHKTSSPDLPNFPHTLARPKKWTQRSDYGGISDD
MVWQEVMHDLRKHYIADANKAQVLHLMRISRLPLVKWRYPDDHVFTKKNPGCGLCDKAIIQDLHEHIFCKCEVLLSMLTR
MKIPSVDSLKDWIFTESKCGVLPSFPGHVNSDAPRKHQQVKTRKYLRELAYGIWKMERSLRYSGDDATLGHVQQGLLQFL
KEAQMCFYDGQPPALHDERE
>ATCopia78#LTR/Copia 32-4077 [Arabidopsis]
MASNNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQGLDED
TFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEK
VLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGG
YGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYVEEKIQEEDMLL
MASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSM
KTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGL
ELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKT
WVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILE
MARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKY
IFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTSSQI
EESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIG
VKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEV
YIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGN
NPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEG
VDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGG
DVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALA
KNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGVAKSSLRG
>ATCopia70#LTR/Copia 233-4531 Wised via estwise with ATCopia22 protein [Arabidopsis]
MKTALCSRKKFGFLDGTISKPVEGSPDLEDWWTIXALLVSWIKMSIDPVVKKNVSHRDVAKDLWDHLKKRFSVMNGPKLQ
QLKSELACCKQRGLTIETYYGKLTKIWDSMXAFKPVRICKCGGCVCDLGALQEKDREEDKVHEFLSGLDDALFRTVRSSL
VSRIPVQPLEEVYNIVRQEEDLLRNGANVLDDQREVNAFAAQMRPKLYQGRGDEKDKSMVCKHCNRSGHASESCYAVIGY
PEWWGDRPRSRSLQTRGRGGTNSSGGRGRGAAAYANRVTVPNHDTYEQANYALTDEDRDGVNGLTDSQWRTIKSILNSGK
DAATEKLTGKFTSPSWIMDTGASHHLTGKFDILXDVRDMDPILIVLADGRERISVKEGTVRLGSNLVMISVFYVEEFQSD
LISIGQLMDENRCVLQMSDRFLVVQDRTSRMVMGAGRRVGGTFHFRSTEIAASVTVKEEKNYELWHSRMGHPAARVVSLI
PESSVSVSSTHLNKACDVCHRAKQTRNSFPLSINKTLRIFELIYCDLWGPYRTPSHTGARYFLTIIDDYSRGVWLYLLND
KSEAPCHLKNFFAMTDRQFNVKIKTVRSDNGTEFLCLTKFFQEQGVIHERSCVATPERNDRVERKHRHLLNVARALRFQA
NLPIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKKQPRFDHLRVFGSLCYAHNRNRGGDKFAERSRRCVFVGYPHGQ
KGWRLFDLEQNEFFVSRDVVFSELEFPFRISHEQNVIEEEEEALWAPIVDGLIEEEVHLGQNAGPTPPICVSSPISPSAT
SSRSEHSTSSPLDTEVVPTPATSTTSASSPSSPTNLQFLPLSRAKPTTAQAVAPPAVPPPRRQSTRNKAPPVTLKDFVVN
TTVCQESPSKLNSILYQLQKRDDTRRFSASHTTYVAVITSAIEPXSYKQAMMDKRWIKAMGLEIDAQEENHTWTIEDLPP
GKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGETFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHG
DLREEVYMKLPPGFEASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKILIYVDDL
IITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLLGVKPANFPLEQNHKLGLS
TSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCD
SDWAGDPMSRRSVTGYFVQFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDSKS
AIYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGRDCFSAFRIKLGIRNLYAPT
>ATCopia84#LTR/Copia 129-4560 Wised via estwise with ATCopia4 protein [Arabidopsis]
MMNVSTLISNNYLMWSLQVHAHLDGHGLDGHLDGSINIPPPTITSNGVISENLQFTKYKSQDKLIYSNLIGEISTNLQPL
VSRTTTANEIXTKLSDTYAKPSRIHLQQIRRQITSWTKGTKTIDEYMNGLTIRXDEMALLSRPAYHENIIEKIFIGLLEE
YKTVIDQIEGRDXSVTEVHERLLNHEGRLLTVATQPTNFPVSAHVXHNNNNNRYNNNGXTXNNNNNSNWQPSQSQNNSRS
DTRVSKPFLGKCQFXSHNARRCPQXQSLQSMSSLSLTNPFKPSQPRANLAVGSSYATNPWLLDSSATHHLTSDLNNLALH
QPYNGGDDVMIADGSNMTISHTSSTLISNQIXSLLFDKILCVLNIQMNLISVYRLCNTNQVSVEFFPASFQVKDLSTRSX
LLQWRTKNELYEXPMSSPQAVAMVSSVGPKPTLTSWHSRLGHPSSVLHSIISQFSLLVSSSSQKLLSCSECSINKSHKLP
FTKTFIASTRPLEYICTDVWTSPNNYFVLIDHFTRYSWLYPLQRKSDVKEVFIVFKNLVENRFQCRIGTLFXDNGGEYIA
LRSFLTAQGISHLTSLPHTPEHNSLAKRKHMHIVETCLTLMSTASDPLAFWPYAFATTIYFINRMPTSVLSMQSLFEKLF
GTTPNYGKLRVFGCLCFPXLQPYTSKKLQALSQRCVFLGYSTSQSAYFCYDQATRYMYASRHVQFDEKMFPVCPTLHLMV
QEETVNSESPSAPVVSPIQPEIPIGHTPVTLPPSXLKPRRELLXSSSPSSSSRNEEDNQILENLGPTQTGPTTTSQLNPA
RKQLLAHINTSPNQNREEMLTSSSSRQIRETSLSLSSQTPASSTGPSRSDLHLSPSPNXSYRLLPLKTLLPHLPLXPTTP
HKNGLTPTIQQIPPRIEPNVPPQHELRVITQPQPPTDATTSHQVVSHQSHNQNDQPSENVPNMKTXAKNNITKPIQKFNL
IVSGPPSKEPTTIKQALKDQNWSRGCSSEFDALTIHQTWDLVPPASTQNIVGCKCVFTTKYFSNGVLERYKVRLVAXGFH
QQYWKDYAETFSPVIKSTTIRLVLDVATAKAWQLKQLDVNNAFLQGKLTEEVYMSQPPGFIDIDRPSYVCRLKKPIYGLK
QAQRAWYTTLKQYLLCSGFVNSVANTSLFIHTSGHNITYVLLYVDDIIVTRNNNVVVNKFFSSFVERFSIKDLSDLHSFL
GIEVNQIAKGLHLMQQKYITNLLIKHNMLDAKPVTTPLPTSPQLILDSGDPLPNASQYRSIVGSLQYISFTRTDISFAVN
KLSQFVHKPTHELLQAAKRVLRYLAGTITQSIFLHASSPMTLHAFLDADWTCDTNDNISINGYIIYLGSNPISWSSRKQR
GVARSSFESEYXAVANCAAEVRWLCSLLYELKIPLPIAPVINCDNIGATYLCVNPSFYSQMKHNALDYHFVRNQIQDGLL
QIFHVSTNVQLADTLTKPLPRTRFQHACRKIGVIQVPPS
>ATCopia94#LTR/Copia 368-4628 Wised via estwise with ATCopia22 protein [Arabidopsis]
VSYYYSKASDHPGHVISHPLLRGDNYEEWAINLETALASRKKFGFLDGRISKPEEDSSDFDDWKSINALLVSWIKMTIEP
NLRSNISHKPVARDLWEHIKKHFCVSNGPRVQQLRKELSNCRQDGLSIETYYGKLTKLWDNMDACRPRIVCTCGKCICDC
LAVLETLREHDKVHDFLMGLDESAYGTVRSSLLIQEPLPSLEYVYLKVTQDEDSRSHKQVSDSRPDGMVFAAQHASRVRP
GERSSSTTVCTNCGRTGHMAESCFQILGFPEWWGDRPRNQNGRGCGTKSNGSGRGGGVVARDNVAQGASSSEVVHANVAI
TDADRAAVLNLTDEQWISVKRAINATKGNSDEQLSGKSSSTSWILDTGATNHLTCRRDILENVRKSTSTPIILADNRIVM
GDMVGSVTLNKHLKLHNVFYIEDLGFDLISVTQLMEENDCVMQLSVPFCVLQDRTTRTLIGVGKPSGGLVYFRSTEVAVA
VKGVPKQSLELWHQRLGHPSLKVVESLPDFVFSSHKDFSNKACDVCIRAKQTSSSFPISNNKTTEIFEMIHCDIWGPYCE
PSSSGARYFLTIVDDYSRGTWLYLMKNKSDTQTKLRDFIALVDRQFGKKVRVLRSDNGGEFLSLTSYFLASGIVHETSCV
GTPQQNGRVERKHRHLLNVARAIMFQGSLPIQFWGECALNAAYLINRTPSMVLNGKTPYKVLFGKRPSYDHLRTIGCLCY
IHNQDHHGDKFASRSRKCVFVGYPYAKKGWRVYDLEKEIFCVSRDVVFDEGIFPFHNDLNPLPLTLDTTSSLTPFYSDDD
DDDNGPTTCSVSVPPVPVIPLRVAPISLADSGSKVDLPNDDLVLPDSASTTPLPTDPKPTRERRQPAYLADYETTFLCGS
SSTPYPISDVLTDARFSSAHKAFLTAITLAHEPATYAEAFADPKWRDATKEEIDALVLNHTWDIEDLPLGKVAIGSKWVF
KVKHRXTVERYKTRLVALGNRQKEGIDFDETFAPVAKMTSVRIFLSIVAARNWEVHQMDVHNAFLHGDLEEEVYMKLPPG
YFAQHKGKVCRLRKSLYGLKQAPRCWFAKFATALKNYGFQQSYSDYSLFSFNRDGVSLYVLVYVDDLIVTGNSTTAISEF
KQYLDSCFHMKDLGLLKYFLGIEVARSPDGIYLCQRKYVLDILQDTFLLGAQPSGFPIEQNHTLASATGSFLTDLASYRR
LVGRLVYLNVTRQDLAYSVRVLTQFMQKPREEHWTAALRVVRYLKGTPGQGVLLRANSDLHIYGWCDSDFSGCPRSRRSL
TGWFVQLGQSPVLWRTKKQKVVSMSSAEAEYRAMSLTARELVWLQALLEDLAVFLSRPMTLYCDSTAAIHIAANPVFYER
TKHIERDCHFVREKVQNGTIATVHVSTTTQLADIFTKALGSREFDVFRDKLGIEDLHAPT
>ATCopia87#LTR/Copia 4-4020 [Arabidopsis]
MVSELQVKEETSQEPRFERFDGRGDYTLWKRKLLAQLEVMGISDALKEKEEKKEAVETERVKVVSSSSERRREEHKKDHS
REEKENKARSVIILSVADNILRRIRTEETAAGMISVLDKLYLSDPLSSRISLKRKLFEFKMSENKAVEENIEDFFRIVED
LEKLDVYVSDEDKAFMLLLSLPRKLEQLKYSLDYCEEPLTLGRVMTAIYKKELEVAQIERQTEEEEKRLSLRERERSDYR
EEQAKGKEKVRSEAREKKGPCWRCGQKGHVKTECFQEKKNKSRKKSVRYEESSAQSIVSGGSVFMVSEAAARASKGSSEE
WICDTGCTSHMSSRKEWFEDLVFSESGNVSMANDTTLQVKGIGSVRILNDDGTTVLLTNVMYIPGMSKNLISLGTLENKG
CWFKSKNGILKVIKGCITLMKAEKVGTLYMLKGKAVTARRRAVQGPKEETKMEHIKPAHMSQTSLEIPVKKGCIRKQKIG
EVKVCEDRAQKEVKRIKFDSEKIVTEMKPKIVHSKIWSFASTPRKIKEGLRIKGITAKETGKSVCDTILLKSCTGGVDIA
VNLKKSLFSSSFEVSRDKETSSASNCRKLVISQDEKFQRDIICECCQEHECERRKCVSEKGIFSLHDKNELVYNESVIQG
GASSSENSQQHSSLNSHQVMATFMRSRKEEMAKDGTYHHSTSHQVSMKRSGVTVYAPSSQRKPSPRERNIISVGCYDGEI
FFKILLPEDKEDCFIRKNAEFLEGYLIKVLNLKFQDLEDQRRKSVRVSLKSLQDYETSSFQVQGGAYSAKGSFISEGQES
LNTSLQGRDAASETSEEETDLQGYLLTRINVKREVQPSKKDEETKLVGSVQFIIEDAGKTEPTSFEEEKRDPSWSKVEEI
QFLHNRDTWDLADKLMNQEASICKGIYKKKPEFSGIGKPSFKVNLRVKGHSKEKVVLKLMEMKQKTDFLHENSEKNIRML
QPAVYEEKSRKEKAFLLENFLYGLKNLPRSQNQRNDTLLIQDGYMRSKYVLWVYFKVSKMEIHQNRGFESPRLSQEAYVI
KVIRLFKEDQCEFVFTSSETLFEFQALEEEKQGDQADYMKLISCLSDVDSVVVAIIGTRVNIAWFRGVVFRSKKEHWKSM
LRRMRGIKGTTESVQVHRKQEDFELTRVNDSKVAVGADQKRVLTCRSFTTAGSSISCKYMFQEVDFVSTKKGERNRWTGA
YKRVVWVRDFKDLIESSLVFKKQEESMLRGCYSSKFAAGSVLKVNFQQCVFSFAGNTLRRESGLLKVGVSSTTEAEKRVQ
EMDIQETVLSRELLDMDTGGLKKTTKLGMLSSAAGVVTKGLTRSMFQDGGPMLRFTKN
>ATCopia55#LTR/Copia 14-4279 [Arabidopsis]
MEQPIELYSQPLLNISNCVTVKLNGRNYLLWKTQFESFLSGQGLLGFVTGALKPPDPVLATPLTAEAAAVETVNPAYLSW
VKSDQVVRSWLLGSLSEDILSEVVNTTTSQEVWLALAKHFNRVSSSRLFELQRKLQTIEKRDRSMSDYLKEIKSICEQLA
SVGSPVNEKMKIFAALHGLGREYEPIKTSIEGSMDTVPTTFEDISPRLTGFDDRLLAYTDAASITPHLAFNTQRYDSTTY
YNKGRGSSSQKSKGRGGYTTQGRGFHQQISSGSSVSSGQSVERPVCQICGKIGHPALKCWHRFDNAYQHEDMPTALAALR
ITDVTDQAGSEWCADSAATAHVTSSPHHLQQSRAYSGSDTVMVGDGNFLPITHTGSALLPTTSGTLPLLDVLVVPDIAKS
LLSVSKLTTDYPCTLEFDANGVIVKDKVTKRLLTLGQNKNGLYTLKDPPVQAFYSSRQQAASDEVWHRRLGHPNSKILQQ
LVSTKAIIINKSTNRMCESCQIGKSSRLSFSDSQFVATRLLERVHCDLWGPSPVLSNQGFKYYVIFIDHWSRYCWFYPLK
CKADFYITFCKFQKFVETQFNQKISTFQCDGGGEFISHRFLKHLEESGIQQSISCPYTPQQNRLAERKHRHITELGLSML
FSAKLPQKVWVEAFFTSNFLSNILPTTTLPNQMSPFERLHGHQPEYSALRTFGCSCFPTLRNYASNKFDPRSLKCVFLGY
NDRYKGYRCIYPPTGRVYISRHVIFDESSFPFQDTYLHLQNLGSTKLLEAWQQNFMPSQKNQSETQAASVFSEDDFPPLP
VTRVQVSPPNVTPQAAQSTVQREEQPADTDIQSNSPRNQAESPALVDRECIERTTGSDPASIGDNALSPQDSATQRSPVQ
STETAGTSDQNQRTEAAVDPVQQVHPMVTRSKKGVVKPNPRYVLLTQKASHPEPKTVTQALKHEGWKGAMGEEIDTCVET
NTFSLVPYTPDMNVLGSKWVFRTKINADGSLNKLKARLVAKGYHQEEGIDYLETYSPVVRTATVRLVLHIATVMEWNLKQ
LDVKNAFLHGDLNETVFMHQPAGFVDKTKPNHVWHLHKSIYGLKQSPRAWYDKFTNYLLEFGFVCSIQDPSLFFYEQGRD
VLILLLYVDDIVLTGSNNILMDRLLQEMSKEFRMTDMGSLQYFLGIQAQNSDQGLFLSQQKYAEDLLQVAGMIDCAPMPT
PLPVQLHKVPKQNELFSNSTYFRSLAGKLQYLTLTRPDIQFSVNFVCQKMHAPTTADYNLLKRILRYVKGTITMGLLFNK
NTDFTLRTYTDGDYSQHSKQKKSATNNDAVFKLRAFSDSDEKQDVLQEDSVPFLATISSPGRRRSNQLSPRAQQKPSIKP
CQIQLLKSSGSITCSEISTFHNLIHRSSMETTFPPSILLQTRYFTHALNTFKLTIILLEKG
>ATCopia11#LTR/Copia 481-4647 [Arabidopsis thaliana]
MTTSIEAKNKLGFVDGSIPKPDDDDPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTAAAIWKDLYTRFHKSSLPRLY
KLRQQIHSLRQGNLDLSSYHTRTQTLWEELTSLQAVPRTVEDLLIERETNRVIDFLMGLNDCYDTVRSQILMKKTLPSLS
EVFNMIDQDETQRSARISTTPGMTSSVFPVSNQSSQSALNGDTYQKKERPVCSYCSRPGHVEDTCYKKHGYPTSFKSKQK
FVKPSISANAAIGSEEVVNNTSVSTGDLTTSQIQQLVSFLSSKLQPPSTPVQPEVHSISVSSDPSSSSTVCPISGNLFPS
ILCSFAGIARPYVCSLDSNVTAIHSWVIDTGATNHICHDKHFFSSFKYLHDTTVSLPNGIRVSIVGIGSVHLGRHLILND
VLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLYIVDLDSLSHPGTDSSITVASVTSHDLW
HKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLT
IVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELNFTQFYHSKGIVPYHSCPETPQQNSVVERK
HQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFS
PRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHVNPSDSSS
SVEILPSANPTNNVPEPSVQTSHRKAKKPAYLQDYYCHSVVSSTPHEIRKFLSYDRINDPYLTFLACLDKTKEPSNYTEA
EKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAK
LNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSS
TLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIH
ISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKA
HLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYR
SLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQIA
DPFTKPLYPSHFHRLISKMGLLNIFVSS
>ATCopia7#LTR/Copia 34-4337 [Arabidopsis thaliana]
MEESIFVSSLNISQVVTLKLTPTNYLLWKTQFESYLSSHLLLGFVTGATPRPASTIIVTKDDIQSEEANQEFLKWTRIDQ
LVKAWIFGSLSEEALKVVIGLNSAQEVWLGLARRFNRFSTTRKYDLQKRLGTCSKAGKTMDAYLSEVKNICDQLDSIGFP
VTEQEKIFGVLNGLGKEYESIATVIEHSLDVYPGPCFDDVVYKLTTFDDKLSTYTANSEVTPHLAFYTDKSYSSRGNNNS
RGGRYGNFRGRGSYSSRGRGFHQQFGSGSNNGSGNGSKPTCQICRKYGHSAFKCYTRFEENYLPEDLPNAFAAMRVSDQN
QASSHEWLPDSAATAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIPLNISQGTLPLEDVLVCPGITKSLLSVS
KLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVLKDVPFQTYYSTRQQSSDDEVWHQRLGHPNKEVLQHLIKTK
AIVVNKTSSNMCEACQMGKVCRLPFVASEFVSSRPLERIHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDF
FSVFVLFQQLVENQYQHKIAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGIAERRHRYLTELGLSLMFHSKV
PHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLHGTPPVYTALRVFGSACYPYLRPYAKNKFDPKSLLCVFLGYNNKYK
GYRCLHPPTGKVYICRHVLFDERKFPYSDIYSQFQTISGSPLFTAWQKGFSSTALSRETPSTNVEDIIFPSATVSSSVPT
GCAPNIAETATAPDVDVAAAHDMVVPPSPITSTSLPTQPEESTSDQNHYSTDSETAISSAMTPQSINVSLFEDSDFPPLQ
SVISSTTAAPETSHPMITRAKSGITKPNPKYALFSVKSNYPEPKSVKEALKDEGWTNAMGEEMGTMHETDTWDLVPPEMV
DRLLGCKWVFKTKLNSDGSLDRLKARLVARGYEQEEGVDYVETYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLHDE
LKETVFMTQPPGFEDPSRPDYVCKLKKAIYDLKQAPRAWFDKFSSYLLKYGFICSFSDPSLFVYLKGRDVMFLLLYVDDM
ILTGNNDVLLQQLLNILSTEFRMKDMGALHYFLGIQAHYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPLQLDLLQGNN
KPFPEPTYFRRLAGKLQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYLKGTMTMGINLSSNTDSVLRCYSDSD
WAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSWIGFLLQEIGLPQQQIPEMYCDNLSAV
YLSANPALHSRSKHFQVDYYYVRERVALGALTVKHIPASQQLADIFTKSLPQAPFCDLRFKLGVVLPPDTSLRG
>ATCopia16#LTR/Copia 132-4783 Wised via estwise with ATCopia1 protein + both termini ORF-extended  [Arabidopsis thaliana]
MVKKGGKMKTRGSTPDDEGSAVRSVREAAILEDQKLTTLKQQLAQRSDVYGGNGFKVSDSGENPLLLHSSDHPGLSIVAH
ILDGSNYNSWSIAMRISLDAKNKLGFVDGSLLRPSVDDSTFRIWSRCNSMVKSWILNVVNKEIYDSILYYEDGVEXWIDL
FTRFKVNNLPRRYQLEQAVMTLQQGKLDLSTYFTKKKTLWEQLANTKSRSVKKCDCDQVKELLEEAETSRVIQFLMGLSD
DFNTIRSQIFNMKPRPGLNEIYNMLDQDESQRLVGFAAKSVPSPSPAAFQTQGVLNDQNTILLAQGNFKKPKCTHCNRIG
HTVDKCYKVHGYPPGHPRAKENTYVGSTNLASTDQIETQAPPTMSATGHETMSNDHIQQLISYLSTKLQSPSITSCFDKA
IASSSNPVPSISQITGTFLSLYDSTYYDMLDWSLVLKYEISCWMXSLDILSCPVADKAIASSSNPVPSISQITGTFFSLY
DSTYYEMLTSSIPIETELSLRAWVIDSGASHHVTHERNLYHTYKALDRTFVRLPNGHTVKIEGTGFIQLTDALSLHNVLF
IPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNLDKSLVDVSSFPGKSVCSSVKNESEMW
HKRLGHPSFAKIDTLSDVLMLPKQKINKDSSHCHVCHLSKQKHLPFKSVNHIREKAFELVHIDTWGPFSVPTVDSYRYFL
TIVDDFSRATWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNAHELKFNELFAKEGIKADHPCPETPEQNFVVER
KHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVINNETPYERLTKGKPDYSSLKAFGCLCYCSTSPKSRTKF
DPRAKACIFLGYPMGYKGYKLLDIETYSVSISRHVIFYEDIFPFASSNITDAAKDFFPHIYLPAPNNDEHLPLVQSSSDA
PHNHDESSSMIFVPSEPKSTRQRKLPSHLQDFHCYNNTPTTTKTSPYPLTNYISYSYLSEPFGAFINIITATKLPQKYSE
ARLDKVWNDAMGKEISAFVRTGTWSICDLPAGKVAVGCKWIITIKFLADGSIERHKARLVAKGYTQQEGIDFFNTFSPVA
KMVTVKVLLSLAPKMKWYLHQLDISNALLNGDLEEEIYMKLPPGYSEIQGQEVSPNAVCRLHKSIYGLKXASRQWFIKFK
TTLVSLGFEKCHGDHTLFVKAQDGFFLVVLVYVDDILIASTTEAASAELTSQLSSFFQLRDLGEPKFFLGIEIARNADGI
SLCQRKYVLDLLASSDFSDCKPSSIPMEPNQKLSKDTGTLLEDGKQYRRILGKLQYLCLTRPDINFAVSKLAQYSSAPTD
IHLQALHKILRYLKGTIGQGLFYGADTNFDLRGFSDSDWQTCPDTRRCVTGFAIFVGNSLVSWRSKKQDVVSMSSAEAEY
RAMSVATKELIWLGYILTAFKIPFTHPAYLYCDNEAALHIANNSVFHERTKHIENDCHKVRECIEAGILKTIFVRTDNQL
ADTLTKPLYPKPFRENNSKLGLLNIYEAQA
>ATCopia49#LTR/Copia 46-4131 [Arabidopsis]
MAGTPIAIFDGSGDFSLWKTRIMAHLSVIGLKDVVIGTSSPPLTAEEEEDPEKKKKRDADDAARLERCDKAKNVIFLNVA
DKVLRKIELCQTAAEAWGTLDRLFMIRSLPHRVFTQLSFYTFKMQENKKIDENIDDFLKIVADLNHLQIEVTDEVQAILL
LSSLPSRYDGLVETMKYSNSREKLRLDDVMVAARDKERELSQSNRSVSEGNFARGRQEGSSNNNQRNKGKGRSRSKSRDG
KRVCWICGKEGHFKKQCFKWLERNKDKGSGSSSDKGEASIAKAEYDPAMVLMAEEENLFVSGNTADEWVLDTGCSFHMTP
RRDWFSDFREVKSGYVKMGNDSLSQVKGIGNIRIKNSDGTQITLTEVRYMPTMSRNLISLGTLEDKGCWFKSQDGILKVV
KGCSTVLKGQKRETLYILLGEAEIAESNVSEKSKDETVLWHSRLGHMSQKGMEILVKKGCLNRKVIHELKFCEDCIYGKN
HRVSFPSAQHVTKEKLAYIHSDLWGSPHNPASLGNCQYFISFIDDYSRKVWIYFLKKKDEAFEKFVEWKKMVENQSDKKV
KKLRTDNGLEYCNHYFEKFCKEEGIVRHKTVAYTPQQNGVAERLNRTIMDKVRSMLSESGMEKRFWAEAAATAVYLINRS
PSTATNFELPEERWTGALPDMSSLRRFGCLAYVHADQGKLNPRAKKGIFTSYPEGVKGYKVWLLEEKKCVISRNVIFREE
MMYKDLKTDSQNSFYEEVMENIGEGSNQLISNITDQSITEQESVEQGGVTEEQIVNEQNQVQTETHEEEGSSSDNSTEEV
DLSNYLLVRDREKRTVKLNRRYNESNMVGFAYNTEDGGKSEPKTYQEALSDQDWELWNGAMKEEISSMGKNHTWDLVDKP
VNAKIIGCRWVFTRKAGIPGVEAPRFKARLVAKGFTQKEGVDYNEIFSPVVKHVSIRFMLSMVAQFDMELHQMDVKTAFL
HGFLDEEILMAQPEGFEDKKYPEKVCLLKRSLYGLKQSPRQWNLRFDEFMKSIDFTRSAYDSCVYLKQQSDKSYVYLLLY
VDDMLIAAKEKSSIMELKQLLGKEFEMKDLGEAQKILGMEIARDRAAGVLTLSQEGYVKKVLRSSQMDQAKPVSTPLGIH
FKLRAATEKEYQEQFDRMKIVPYSNTVGSIMYSMIGTRPDLAYPVGVISRYMSRPLKDHWQAAKWVLRYMKGTEKKKLCF
RKNKDFLLRGYCDSDYGGDYDNRRSITGYVFTIGGNTISWKSRQQKVVAISTTEAEYMALTDAVKEALWLRGFSEELGFA
QESVEVNCDSESVIALAKNSVHHERTKHIDIRLHFIRDIINAGLVKVVKIASECNPADIFTKVLPVEKFEGALHMLRVTE
N
>ATCopia20#LTR/Copia 134-4411 Wised via estwise with OSR3/Copia and gi|25301684|pir||F86470 proteins  [Arabidopsis thaliana]
MENTKALFVPVTLKGVNYLLWARTTKTTLCSRGLWAHILTSEAPSEATIREGMEIVHVGEEKWFQEDQSVLALLQNSLEA
SLLEAYSYCETAKELWETLFNVFGNQSNLSRVFEVKKAINDLSQGDMEFTQHFGKFRSLWAELEMLRPNTLDPKVLIERR
EQDKVFGLLLTLSSTYNDLIKHLLRADKLPNLEEVCSQIQKEQGSLGLFGNKGELAXVNLSDLATANRGNYKYDNNKKAL
WCEHCKRSGHTKEKCWTLHPHLRPGRREPRANQVTGENFGTQEQSGTSNQHLGGNGAAMAASSDLVRRSDLKALIKALKE
SSGKSYHALSSLKPLIIDSGASHHMISDSKLISNIEPALGNVVIANGDRIPVKGVGDLDLFDKSSKAFYMPTFTSNLLSV
KKATTDLNCYAIFGPNEVHFQDIETSRVLGQGVTKDGLYVLEDTKPSVPLSSHFSSILGNANSESWHARLGHPHSRALKL
LLPSTSFKNDECEACILGKHCKSVFPKSSTIYEKCFDLIHSDVWTSPCLSRENHKYFVTFIDEKSKFTWFTLLPSKDRVL
EAFTNFQTYVTNHYDAKIKILRSDNRGEYTSHAFKQHLNKHGIIHQTSCPYTPQQNGVAERKNRHLMEVRRVMMFHTNVP
KHFWIDGVVSACYLINQTPTKILLDSSPFEVLNKVKPFINHLRVFGCVCFVLISGEQRNKLQPKSTKGMFIGYSINQKGY
KCYVLETRKVLISRDVKFLESKSYYDKKNWEDIQDLTDSPSDRATNLRIILERLGVSNIQTQTTPRTSNPETITQPENME
EEEEEEEEEEEKQGKEQELITLEETESSKVQEKDTSLLNDDNGHTNNQEEDSNSREEPRIPRRSEHLKDKRVYYNNQVYF
DNVVEHPIQVVCTLAHLPEEHQVFFGKVDQHWIPQTYEEAITHQVWRDAIAAEKQAMENNHTWDEDELPRGKKVVTSKWV
FAIKYKSDGEIERYKARLVARGFTQTYGEDYLDTFAPVAKLHTVRVVLSLTTNLEWDLWQMDVKNAFLQGELEEKVYMKP
PPGLEDINAPNKVFKLKKAIYGLKQSPRAWYHKLSTTLMGRGFKRSEADNTLFTLPSQKGIVVILVYVDDIIISGNDKVG
IQDTKTFLKSVFDIKDLGELKYFLGIEVCRSKEGLFLSQRKYTLDLLAQVGKLGVKPAKTPLEDDYKAKRKGEHDNKPFE
DATRYRRLVGKLIYLXHNXPGICFVVNVVTQHMQAPTIHHWNMVNRILKYLKGAPGQGIWMGCNRNTEIVGYCDADYAXH
QQDRRSTTGYCTFIGGNLVTXRSKKQKVVSLSSVEAEYRAMRKLTTELMWLKALLKDFGTDTPNPIPMHCDNQAAIHIAS
NSVFHERTKHIEVDCHKVREQVQLGVILPHYTEGEEQLADVFTKGASTKVCEYIHNKLGLVDLTRP
>SR2B_pol#LINE/RTE-BovB 3-1415 [Schistosoma mansoni]
KLAATSVASKYRAELASRLATTPPKSIDEHWLHLHDAMKMASKVACGFAKRPAYKHWVSSGSLQLIEARRSTPGDREFDH
KRRLLRNEIGQSLRKDREAWWSERANEMEAAAASGNCRKLFQLIRATGSKKSGVSETICEDDGMPITNICRRLGRWAEFF
EGQFNWHAAPATSTSLSFPPWPVTTDPPNEAEVRKELQLLKRYKSPGPDDLHPALFKDGGDFLAKELTVLFGKVWEQESV
PTSWNESIVVPIFKKGSRCSCNNYRGISLLSIASKLLASIILRRLFKTRERLTREEQAGFRSGRGCIDHIFTLCQMLEHR
HTYRRPTIVVFLDIRAAFDSLDRTVLWDCLLKKGVPEKFINILKALYTNTSGRVRAYNHLSPLFHSSSGVRQGCPISPFL
FNFAIDDILETALMDVSNGSVDMLPGERLLDLEYADDIVLLCDNAQGMQSALNQLAISVRRYGMCFAPSK
>RTE.54_Amis#LINE/RTE-BovB 141-3684 via tfasty with RTE-1_Crp_pol, 2 frameshifts and 10 stopcodons. [Crocodylidae]
MCNSIPTLKEDMHRHLPSIASPTVMRQVVMGAGASDYQKPLVTDLHRGNDCMMVVLYLELRQVCNLAAAIMTEQAYLGST
LLTLYGEGARKGALNIVCLISPxLENYIQWDHSICGPNQVMKFATWNVCTLMDNPNSDRPERRTALMARELARFDIDIAA
LSETRYAGEGQLTEHGGGYTFFWKGKAKKDRHIHGIGFAIKTKIVTQMPECPVGINKHLMTLCLQLTNRQHATVISAYAL
TLDADDKTKEEFYSKLDQVLSSVPKEDKIILLGDFSARVGRDSELWKGTLGKEGVGKVNSNGILLLSKCSEHDLIITNSL
FHQSNKWKTSWMHPHSKHWHLIDYIIVHAWDHCNIHITRAMTSTDNCWTDHYLICSIMSICIAPKxHKQKKQPRKRFNIE
CLKDPAKSNHLQQCLSEKLSNLPDDLDTIDHWESLKKGIHEACKESLGFSTKKHQDWFDENDREIQALIDRKRRAFKAWQ
NDINSKQKQDIYRHIKAKTQRKIQEQKNKWWEDKAKEIQKFADSHDMHSFFSATKAIYGPSTQGAIPLRSKDGTTLFKDS
STINAxWKEHFQELLNxDSNVEDNTIKAIPQHPIKDYLADPPTYQEALKAIKQMKNNKACGPDGIPAEIYKQGGKKLSHQ
LHIIIMKIWKHEQIPSDLRDARIITIFKKGDRSDCSNYYGIALLSIAGKILTCILLNRLTFLTEEILPESQCGFRPLRGT
IDMIFVARQLQKKCYKQHxDLYMAFIDLTKAFDSINREALWKILMRFGCLPKFVTIIRLLHDDMTATILSNGSEMDPFTI
RTGVKQGCVIAPTLFSIYITAILHLIADRLPSGVSIQYRMDGNLFNINWLRSKSKITNTSITDLQYTDDCVVCAHSIEEL
QVTLDCFCEAYEMLGLTVNFIKTKILYQPTPNQPAAPPHITIRGQSLENVEHFPYLGSHLSQKVNIDNNIQHQIKSASAA
FGYLQNHVFDDHDIRTQTKLLIYQAVVIPTLLYGCETWITYWKHLKALECYHQxCLxKILHINWKDRRMNASILAQANTT
SIEAMFIWHQLHWTGHVIRMPDNWLPKQVLYSQLTDGHYSRGGQKKRFKDTLKANLKKCNININTWETQALNHPQWCCDV
QQGIDHFEQTYLTMEVDRxERQRERAVTxHHQDLLLPPGTICHVCSxTCGSWIGLLSHLQTH
>RTE1_pol#LINE/RTE-RTE gi|3283068|gb|AAC72298.1|  reverse transcriptase (repbase entry contains 1 frmeshift at N terminus) [Caenorhabditis elegans]
MISSHREWLGLEPSANYLAKKYTVSRRPEVVSNTLCPGGSRLAIGLAGHYRVSRDTTFALNSNPSCLSPPHPASAKGKTV
PGARRKRRSNLGVQTICQSDLEIKKPRDKTRRTDYRVCTFNCRSLSSDDRLAELLEETRRIQFDVIGLCETKRAAEAHLI
HHDGTGVFLGKRNESSVSGGVGFIVRSTLLPKIVEVRFLSHRIGLLTFKVSRKFNCTVIQVYAPTADSDLEEICDFYDSV
EDVFRECRSKYKLVIGDFNARMGCRQNNERYIGPHAMEPRNDTGELLATFCETNRLWHTNSMFKKPMHKRWTFVSPDGNH
RHEIDHILANGKFVTDTTVLPSFTNGSDHRLLRCNLHFNNCLAKLEQVRRRKPPKRVLDPAIAYAISATVTVQSDPDLDT
DYDNLIQSLKELQDQAIVRPANHSSNRLSEETRKLLNKRRFMDRNDPQFKSISDKCREAVQKDHEAFASTRLLSAANQKK
SLKRVARDINEYKSVIPCLKSTSTGERITSRVKMEQEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFP
NGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCL
LNRMRRSLDEAQPVEQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYID
LLKECYKNCTTNFTPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFRKLSWIELKGEAEDYDTIPGMRVNGRNLTNLRF
ADDIVLIANHPNIASKMLQELVQKCSEVGLEINTGKTKVLRNRFADPSKVYFGSPSPTTQLDDVDEYIYLGRQINAQNNL
MPEIHRRRRAAWAAFNGIKNTTDSITDKKIRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQR
ERDLHREDIRTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGE
VITPWSTIAKDRKQWLAVIRRNTTNS
>RTE-5_SP_pol#LINE/RTE-X 1064-4777  [Strongylocentrotus purpuratus]
EVFGPLSNLSNLSNLSNLSMLSLNVNGLKSKLDTGLLDLYSKNFDIICLTETKTDTPDLLNTYLSEYKCHSIQKSSNKQQ
YGGFHGMCILMKNSIFECSTRIQPTLSESVIWVKVGSELLGFPFILGAIHLPCEGSIHYYHEVFDDLCNDIVDIKSKHNA
PFCLLGDFNARTGMLDDFLDVDDFVDQSSLGACDGDLDMYDTDIFNSRSNNDTVVNNNGKKVIEMCQSFDLRIVNGRAGS
DHTIGKYTCFNKNGGRSTVDYAIMSKRLFPLVKDFNVDIFDRCLSDVHCPIMLTLQSEDILNSDSLRNESREARTGPDKS
NYLAFQWNSNSMLDFKQHTKDYSEVMHKYVDQLEADVNQEGIDIFYSHLCDMFLSTAKEVGVCKLKHHKKDGSKSGNSQS
KQSQQPWFDTECRDARKEYLNVKNRWKRKVKLMRNSDVPVDSSNYDGAGKSYRNLLRCKKRLYFQDLNKSLRSLRTKNPK
EYWQLLNGKNERKEKDIGNVSLKDFLNHFSRLSYKEVDEPEPPIIMQELSQENVCLDVPITLKEVDMMIKKLKNTKACGR
DSIRNEFLKSCPLEILQVVVKFFNVVLDSGIVPTEWCIGIIIPIFKNKGGNTNPDNYIGITLLSCLGKLFTSILNYRITQ
FFEDESLLGEEQAGFRSNYSITDNVYVLKSIIDVYLKNSKRLYCAFIDYKKAFDLVDRAALWVKMFRMGVKGKIFNVIRN
MYRCAKSCVANEGDMSSLFTCNIGVRQGENLSPLLFAIYLNDFQQSIGNSYKGLEFLNTIIKNKLPFDGIEIYKELFSLL
YADDTIILAETPEELQKALNAVKDYCDTWHLTVNASKTKIVVFSRGKVRRIPEFVYDGGVLEVVYDFVYLGVTFNYNGNF
KKAIAKQVTQARKAMYSMLVKAKRLHLSVDTQCHLFDHLVLPILLYGAEVWGYECIDQLEVFQRKFLRTILFVNKCTPDC
MVYGETGRGKILDKIKCRMIGYWVRLVKGKQSKYSLILFKFLLQLQSEGQSLVNIKSQWVEFLADSFDYAGLGNVWRAQG
EGYSAAWIMNTMKTRLSDMSIQEWSAATWSNRICTNYRMFKNELVYEKYLQILCQKEAITLSKFRCRTHRLPVNKGRFDA
NVVDDLQCPLCTPTDIGDEFHYIFVCPFFQNERKMYIPNNLCGSSLRPSALHMDKVSNTAHACQLKKLAKFVRIIMSYFS
KDSSVDGNTVNDSSQISNVVRHTRSGRRVNCPVRLDL
>RTE-4_PPac_pol#LINE/RTE-RTE 121-2865  [Pristionchus pacificus]
MSRHLYIGTINARTLASRDKQTELELALDRIKCDVLAVQEARIVGCASFNLTSSGTLVFHSGGPTATHGVAFLLRPHLAG
GAVFRGLSPRLATLLLPNQRLFLVCAYAPTSSYDDKEYDDFMDQVEAALRSAPRGHTPVLVGDLNCRVAREPGNERFVGE
SASPTPNSRGRTFTEVCVRNRLRIWNTFPKRRHGRIWTWRSPNGSTYHQMDFIAAPPSARVVNCGVVGRFDFNSDHRLVR
MCLSLPDKVKHKRCRERRDLDRSAFTVNANLLASVPLARPNTAADAYRTIRAFTETAATDCWRVRRTPPWISPATRNLLQ
SRSQLQSNPQAAVQYSIACKAARSSLVTDIKNRKEAQARHAATMGRSVTRVMQNLQSSKKRLLVPDPATGELSQEVTKAA
VQRFYEDLYTPAVQLPLGVPTRVPDPFPPFLPDETRHAMSLLKCGHSPGSDGILPEMLFHSRDHLAPIIALLLNRLVAGD
LVPSELTEAVVSLLHKKGDPTNIGNFRPISLLTVTLKVITRCILKRFEAMLEETESSTQTGFRRGRSTLDNLHSVKQVAE
KASEYGIPVYLAFVDFRKAFDTVEWNACWQSLEKYGAHPILVTLLRRIYESSSTLIRVNEDLVRATVKRGVRQGDTLSPR
LFNVVLRAAMDEIDWESDGIRIDGKNLCHLEYADDVTLIAKNRPELERMLKKLMEACSRVGLEINASKTHLLTSCTTTRS
PILIDGMKFDFVSSATYLGGRISLPLDHSDEIEHRIRLGWFAWSRLSSLLTSRLLPMKTRTRLFESCVTSTVLYGSEVWA
LRASDKERLSVTQRKMERKILGISLRDRWTNERVRDCTKLRDWIREGLKRKARWALKIRQMDMEQWSRATTVWTPYNSKR
PTGHPRTRWRDDLTRAIGAHWWNATYEEFRPILI
>RTE-10_AMi_pol#LINE/RTE-BovB 479-3667[Crocodylidae]
MVARPGGEGPRRSAAAQMSKQPYLGVACLPQSGEGPRKGGLKKLPSNFFPGSKLIIACWNVRTMLTGLELKDHELRKTAI
IDRELHQLGVDIAALSETRLSETGSLDEVNYHFCWSGKPDNEPRIHGVRFAVKKSVLSACTPLVSINERIMRLDVNANSG
TLTLLSIYGPTLNYSKQQKDEFYSQLEQIIKNVPARNRLAVLGDFNARVGKDWVHWGHIIGQHGTGSLNENGQRVLELCA
SCELIVSNTYFAGSSRSKVTWKHPRSGHWHQLDLILMRRRNIRDILHARSMHSADCDTDHALVRAKLQLHPKKIHHAKPK
GKPRLNITNMKDSDTCAKFQCALERVSENDQLDSPDSDTLWENFKNKTLATAKDVFGTTKKKQPDWFAASEHLLLPLIEK
KKQARLTLLQQPTKSRNLKFKEAKAAVQKATRECAQKYWQDLCKKIQICFERGDLRGTYDGIKEALGPTCKKTANLKAKD
GTILTDRQEQLDRWTEHYKELYSKDAIICDTALAAIPQLPTMQELDQTPTLEDVEKAIKEIAPGKAAGNDQIPPELLKAG
GRKLASDIHALLCACWEESHIPQDLKDAKIITLYKNKGDRADCNNYRGISLLSVVGKVLARVLLKRLQVLAERVYPESQC
GFRAGRSTTDMSFTLRLLQEKSREQQAPLYVAFVDLQKAFDTVSRNGIYKILSKIGCPQKVLSLFKEFHEGMKATIQYEN
ETSSEFSIDTGMKQGCVLAPTGFGIFFSILLKYAFGNDQSGVLIESRTDGSLFNIRRFQSKRHVTQLTIRDLLFADDAAF
VSNSPDELQIMMNKFSDACIKFGMAISIKKTVVMSQGTNIPPKIYVNNEALDSVDHFCYLGSTLTSSLSLDRELDARIGK
ASVTFGKLTSRVWNNKLLTLNTKVSVYQACVLSTLLYGCESWVTYSKQERRLNSFHLRCLRKILGVTWDQRITNNEILER
TGLQSMQTTLDARRLRWLGHVERMPQDRLPKAVLYGQLKNRPRRRGRPKLRYSDKVKQGLKKFSIPTDNWENPAHNRSVW
RSRVKAGAVTAESHQRAQAEARR
>RTE-1_TP_pol#LINE/RTE-BovB  869-4189 [Thalassiosira]
MVQASAVVHTGASSRTDESGTFSIATWNIRSGRAGGLESACRALGAMNVDIGFLQETKLTGGVYTRQSSGYQVIASDASS
NRQGGVALCWKEHDSYELEEWRFFGPNVLAFRLVTGGKDFYCVGCYIPPSEEDQSTLDNVRRAQQQCPEKFELLLFGDLN
IDLDAPRDTREEIIAEQCDYWKLTCMTTMFKQRRTRRVKGRWTWRQQRLGRWVSTKPDYFLADTAVRRLFKKVVIRRPRH
HDSDHRAIIATFWGGQEKRMRNYRRRVASIPLRMPQFGPLPEMETIFEELKEEVGGKSKRDLPHNQWISDRTWALVDYRA
MLKTRGSLQQRGERNLSRRIHASFRQDRMARAENAAMEIEAKLNGGDFKAGWTIAKRWYRAATDRGPKPCFETMETQTTE
RVELYGKVEPPGEPIPINVQPFGICDGTPDDDEIRDVVKYHLKSGRAGGASFLRAEDIKRWLRDIEQEEDPERSGGCGRN
WRRFVSLIQMIWETGTVPKQMLWVIVVLIPKGGGDYRGIGLLEPFWKVVEIIMDKRLNEVKFHDCLHGFVTKRGCGTAGL
EAKLTQQLAYIRQIPLYGIFLDLRKAYDAMDRERCLEILQGYGVGRNMLRLLEYFWNNAELVCRAMGRYGKPFKAYRGVT
QGGPVSPKIFNIMVDAIVREWLLQSLGEAEPEMPEYKALSCIFLALFYADDGYIASTDPELLQESMDVLIALFERVGLRT
NVSKTKVETCIDGKIRTRLSDPVYTRMRSGLGTRKEWEARKVECDLCNKQLAASSLSNHLETQHGVFRSRVINQDLLVEH
ESRTFTAHRNVSGTYACPVPGCVGTAHTNWTLRRHFHGRHPWDCVSIDGANPLPKCERCGLQCTHRALNTTHTTSQYCRE
ATERKVQQQAAVNSARALNVSFTAYGQSLERVEVFKYLGRLLAMDDNDMPVVRANLKKARKCWTMFSRLLTGENMSPRVC
GMFYRAVIQSVLLFGSESWVLADTAMRVLEGFHVRSAYRMAREHKPRKNNDTGVWRYPSTEEVLEEVGLLTIRQYIEVRR
QTIANYIVHRPIFDLCLGEERRRGTSKRLWWWEQRMDLDLAREMGDVISVVAEDEESTGSWTDEEV
>RTE-1_DBp_pol#LINE/RTE-BovB 249-3209  [Drosophila bipectinata]
INETNTRREETNHPPNPLTTIRISKRTRIGQWNVRTLMEPTRLAQFEGEMEKMQIAIAGISEMRWRGNGTTTTSSGNLVM
HSGTNDGGRSGVGIYVSKQYKQALISWSPVSDRIIIARFRCNARHITIVQCYAPTEDASDDIKDDFYNALTSSLTRIERG
DIKILMGDFNAKIGPNNNGLETIMGRHGVGTRSNNGDRLIDLCQTFQLVIGGTVFPHKEIHKYTWTSPNGHTRNQIDHIC
ISRKWRRSMMDVRNRRSASIDSDHELIIGELLIKLRRNSNTVNRTTRRPPPINVQRLSDSNLSTRMATTLREQMTAQPLN
HSWEQTCSILRSTAEEMLGTRQRRRTXWISAHTWELISKRNSLKSKADHDCRARDEHKELCKMVKKSARNDKRKFLDRLA
ENAESAANTNNMRSLYQIISQLTGSCHRRTQPVRDPDGRLLTDDEAQLQRWRQHFMEISCTEQPSSTQDNFRSIVPSNNL
RISPTAPSIREIKDAIRKLKRNKAAGDDGIPAELLQINTQLMAETLHPHFNNIWESERIPTSWKKGIIIKLPKKGDLSDC
NNWRGITLLNTSYKVLATLLNERLQEKIEPTIRDEQGGFRPHRSCVDQANTLRAITEQTVEWRSPLYLLFIDFQKAFDSV
DRAAIWRALARKGVPVKIINIVKAMYDDAELAVLHNGKISAPFQTNTGVKQGCPLSPLLFNLVVDEIMREVCMNRRGITW
NFTRHLEDLDYADDICLLAHKFEDIQAKARDLEIRASAVGLKINASKTKAMRINNSNTNNITIGDNTIDFVDSFTYLGTI
ITSNGGVESDVENRLRKARSAFGRLHRVWRNQQINRKTKLRIFNSCVKSILLYGSETWLTTQRILMKLQAYINKCLRIIL
GVFWPDRISNEDLWHCTGEVPIQEQIKKRKWKWIGHALRKEPGSIVRMALEWNPQGSRRVGRPKMTWRRTALLEISRKNI
SWDTIKQTAANKVRWRALVEALSSREE
>RTE-2_DF_pol#LINE/RTE-BovB 239-3226  [Drosophila ficusphila]
MKEAEEASERDRFNVDDHGKRKKDNDLRVCTWNVRTLYRPGAAQQLADTLKKCRADIAAIQEMRWIGQGCIKKKDCDIYY
SCHPERHEFGCGFVVGARLRRRVSHFLPINERLATIRITAKFFNISLICAHAPTEEKDDVTKDTFYAELDRAYGRCPSHD
IKILLGDFNAKVGREDIFGATVGRFSLHETTSSNGLRLIGFAAAHNMVVRSTGFRHLDIHKATWLSPDRLTRNQIDHVVI
DARHASSVLDVRSCRGPNIDSDHYLVAAKIRTRLCVAKVARRGLLRRLDIGKLQSQQTRDAFSTQVSGLLSRTTPTPEDI
SDQWALISHSLRTSAEEVIGFQRPPTRNPWYDQECRDATAAKDAAYRRTLQAGATRAVVEVYRLRRRDEKRLFRRKKREX
EKRECESIESSRCRNEARNFYQRVKRLTQGCKTGGVACKDNDGNLVTDAEIVLKLWRDHFSSLLAGSGTGYEDYDPQTPI
YGTDIDVPTPSHAEVKDAIQRLKNNKSAGADGLPAELFKAAGDMLVGSMHQLISKIWRTESMPEDWNLSMICPVLKKGDA
TLRTNYRGISLLPVAYKVLSSVLCENLKPHAEALIGPYQCGFRPGKSTIDQIFTLRQILEKSYENQIDTHHLFVDYKAAF
DSPRRDRLYAAMSELGIPAKLIRLCRMTLSNTISSVKVGNDQSETFSTKCGLRQGDSLSCMLFNILMESIVRKAGVHRTG
TILSNRCVQLLGYADDIDIIGRTKRDVTAAFGAIEKESAKVGLAVNMDKTKFMVCSSRESRRLDSQLTADSYSFESVKEF
IYLGTAITSTNDVSLEIKRRVTLANRCYFGLSRHFNSRALSRQAKITLYKTLILPVLLYGAECWTVVQSDAAALGVFERK
ILRKIFGPICVGDAYRIRWNHELYELYGDVDVVSRVKIHRLRWLGHIARMEEDAPARKVFDAVIVGKRRRGRPRMRWQDQ
VMEALSTSGAANWRRRAQDRDAWRQIVQQAVTRQGL
>RTE-5_BM_pol#LINE/RTE-BovB 692-2551 + 2553-2993 (ca. 900 bp internal deletion)  [Bombyx mori]
MTFGAWNVRTLLDRDGNACPERKTAIVARELHRYNVDVAALSETHLADEGELVEVGAGYTFFWKGTAASETRHSGVGFAI
KNHLVKRLEEYPVHISDRVTTLRVHLDKDNYLNVISVYAPTLDKSDDIKDKFYGEVTLCLDSINAREQVLLLGDFNARVG
RDYEAWPGVLGRHGVGNMNSNGQLLLSLCAQYGLAITNTMFRLAAKYKTTWMHPRSKHWHLIDYAIVRQRDFSQVQITRV
MRGAHCWSDHRLIVTKLRLRLRRPRRSPMKKLASLDIEKLRDPEVRKNYAEALSKKLLSVNETGDVDADWGTLSSHIMDT
ASIALGRKSRRNEDWFDGNDGVLRAALDKHRDLLRQHRRRKGSVAAVKASDLELRKLSRQIKDKWWQDKTSHMQWLTDTN
QLGEFYSEARKLMGTSNHAKVPLKSLDSRHLLTSKEDVLKRWAEHFNALLNVDRSADLQSIALMPQLPLALELDEPLLRD
EVVAAIRQQKDKRAAGADLIPGELIKYGGEELYTLVWELFVRMWEEERVPDSFKVSRITALYKNKGDRSDCNSYRGISLL
SAPGKVFARVLLNRLKDLSEKILPETQFGFRPDRGTCEAIFSVRQLQEKSREQGRQLYLxxxxxIEAYLMRRQLRWCGHV
SRMTEERVAKRIFFSELQDGKRKHGGQLLRYKDVVKRHMKRCDIEPSQWERLAAQRPEWRRMVNGKVREFEDQRKADLDY
KRDQLKARPPAAITYNYENGVLTCPQCARSFAAKIGYISHLRAHERQIDG
>RTE-3_CQ_pol#LINE/RTE-BovB 933-4019  [Culex quinquefasciatus]
MVLRRDRGLVQATRTRRKTPVQEAHDASRTNRHGTGHHMRSHDWKLGTWNCRSLKFDGSIRILSDILRVRKFSIVALQEV
GWIGAEEVQAYPRIGCTIYQSRGENKRLGTAFIVLGEMRDRVIGWTPLTDRMCVLRIKGRFFNISIINVHSPHSGSEDDD
KDAFYEQLNWTYNSCPKHDVKIVIGDFNAQVGQEEEFRPVIGKFSAHVRTNENGLRLIDFATSKNMAVRSTCFQHNLRDK
YTWRSPQGTESQIDHVVIDGRHFSDIIDVRTYRGANVDSDHYLVMVKMRQRLSLAKSVRYRRPPRLDLERLKLPEVASRY
AHSLEAALPGEGELLEAPLEDCWRSVKAAITNAAESTIGFVERGRRNDWFDEECRAILEEKNAARRAMLQYNLRDYEEAY
GQKRRQQHQLFRAKVRHQEELEFEDMEQLHRSNETRKFYKKLNGSRNGFTPRVEMCRDKNGAILTNEREVIDRWKQHFDE
HLNGAEAEAGVQGGRREDFIGTAGEGEEPVPTMREVKDAIKKLKNNKAAGKDGIGAELIKMGPEKLASCLHRLIVRVWES
EQLPEEWKEGVICPIYKKGDKLDCENYRAITILNAAYKVFSQILFSRLSPIAEGFVGSYQAGFVMGRSTTDQIFTVRQIL
QKCREYQVPTHHLFIDFKAAYDSVDREELWKIMDENGFPGKLIRLIKMTMDGARCCVKISGAESDSFTSLGGLRQGDGIS
CLCFNVVLEGVMRRAGFNMRGTIFSKSNQFICFADDMDIVGRTFKAVADAYTDLKREAEKVGLRVNVAKTKYLLAGGTES
LRARIGPSVTIDGDEFEVVEEFVYLGSLVTSDNSCSREIRRRIIAGSRAYFGLHKSLRSRKFSLHTKCSIYKSLIRPVVL
YGHETWTMLEEDLRALSVFERRVLRTIFGGVYENDGWRRRMNHELAQLYNEPSIRKVAKAGRLQWAGHVARMPERADHLS
QRNQKINPAKLVFVSEPVGTRRRGVQRARWVDQVESDLESVGAPRNWRNAAMDRACWRRIVQQAKLMV
>RTEX-1_SK_gag#LINE/RTE-X 478-2505  [Saccoglossus kowalevskii]
MGDSRNSISLRSKENVQNPGEMRKFIERYFGKKVEIKFNHNSVTIRSNTNMKEVWMKAIKAVFTEDKYTYIKKGEVKSEQ
LRIADGDNTVTIKMYDNGTLLIQGNNYNQWMETVGREMFSKIQELLGLNVNFESAEVTEDTVSKNTRARRDPKKTIRFNV
EEYELEASTIKPQKTHYDESNTKNDSQSKGPTSTKQRPTTPTRSTKPNIANTPSRIPCRISKTPIVNNGGSLDNTELAAT
LSQMFKSIQQIDKNYCNIMRSGSITQELTDKLMKVEDNLAKQSRDIQKINKLLENKLRKDEATKPGTGTTIQNGETIATL
MSKIDRIERSITSIEKSFINNDKAISKITALQESTKSCVEKEKEILTKLQQDRHYLQQQLEKRGEEIDILQSENDKLRKD
IRELRHDTQDNYTRNQYSVLAPEDNSDDSQTTGNTSTNSEFTTVTKKIRSSRKVQTLIIGDSMLKDINARGVYRNTQVKT
LRGRKIKDITDHIQKASIVKEVENIVIHVGTNNLADKHKVDECMEEYTTLIDTIREKNPTVKISISSVIHRKNDVATNKI
IDNFNSRLKKINGNNVHFINNNNITSETHLIDAVHLNKRGTAELVKNIKDTIGPLIGVNRQEKTNHRYNNARHRHNRSYD
TPKEVHRPRNNKEQYRPRDNEEQYRPRDNDNTTDQ
>RTEX-15_BF_pol#LINE/RTE-X 2-1135  [Branchiostoma floridae]
LKKTKIIIFNRKGEILSNFKFYLLDKDLDVVSSYCYLGVVFTAGCNFSTAMKTLQKKALRAMFSIRTTLGENNPSVSLQC
KLFDACIVPILLYGAEVWGNAGLNDNSPLEQAHLKFCKAIIGVRRNASNLATRAELGRFPLRIEAYSRLYSYYSRLTREV
PTNSLQYQALLVQQDLHRRKVPCWLSNVSKILEESGYGYLLLNQDYNIPSAQSQVKQRLKDIFLQTFYSELNSNGKKENQ
GNKLRTYRKFKDTYEREQYLNIHNFSHRRAMAKLRISDHPLQIEVGRYNRTPPSDRICTLCNAKDIENEVHFVLECELYS
DIRNSFINALNFDTRAKQLVKDELFVYIMKSSDNIVLQKLCEFIYTCFKKRKETCKL
>RTEX-6_BF_pol#LINE/RTE-X 851-4369  [Branchiostoma floridae]
EADAEPVWEKINLVHWNVNGWTSLNCKLREITLQHLSPDIISINETHLKTDEVIELDDYTWYGHNRKTHRDAPKGSGGVG
IFVKNNLRLQYKITIIDRDVDGMLGLHFEHTKSEYTFVVFSCYLSPEQSPWGRNATEYFSHLLCQMYALESVDAIYVCGD
FNSRTGDRDDCITEVDGIPPRATIDTTFNNHGASLIEFLKDSKMCMLNGRVCQHNDNFTSVSTRGKAVVDYILTPHDCLD
TCHDFNVITASDIVEECGYSCISLIGDRCRVPDHSVLSLTFYVNSQYVENVPSQSVKSRRKRRIVTENFLSSDISRRALL
DLIDSLQVVQKTQQSIDLWYNSLCEVIYSDCDVNETGTNANTPRSRRLRSPGKPFWNAELDELWVQMRDAEREYVRCKGS
KRCKAVLRDVFKCKQYAFDKNLRFYKRKYQRGQALELEGLKTNNPQRFWNEVNKLGPKRSTKIPMKVSDETGNLMEEVDK
VLEKWEKDFSNLFAGNDGEGKFDDEFLQEICDLKLRLESEMNEVSYNPNEFLNAPITLDEIKAAVENAKTGKAMGADEIS
NEMLKAPDMLNTLYMLVQTCFESGLIPSVWYKSIIKPIPKSSKKDPTVPLNYRGISLMSTVYKLYSCVLNNRLTRYLECS
NLLEDEQNGFRRARACIDHIYTVCTVIRARMEQGKSTFSCFIDFQKAFDWVNRDLLAYRLIQNGVDGKFYKAIMTLYKSP
VACVQVNEYQTQWFPTPFGVKQGDVLSPTLFAMYVNDLAQKVKESGLGVRLDDMTLSLLLYADDIIIVAENENELQEMLN
IVAEWCSKWRLMINQGKTQIMHFRKKGARRTSYEFRFGETKLDLVTSYKYLGLHLDEHMSFNSASSVLADSAGRALGGIL
GKVKALKELGYHAYTQLYESCVCPILDYAAGVWGFKKYDKCSVVQNRAIRCFLGVHKFAPVLAITGDMGWMPCEIRGKGA
VISLWNRLINMSNDRLTKKVFMWDLQNHGPWSRDVQRILRSVEQEHIFLNNLRANTKQIKEKLFDMYQEDWASDIWLKPK
LRTYRLFKDAYCTEHYVTMNLCKSQRSLCAQFRAGILPLYIETGRYQAIPEENRICTMCSLGEVESEAHFLFYCPFYDDL
RESIFCKMFDKCPEVIWERDEFRMKWLFEEGVSEISNFIRKAWNKRRRQLYT
>70989994_Afu_pol#LINE/Tad1 gi|70989994|ref|XP_749846.1| reverse transcriptase RNaseH [Aspergillus fumigatus Af293]
MRSTNLRLLQLNIMKSRAGMEALINDHQTQNLDVLLIQEPPVTAYRTHVNDSAWRLYRPTYTDDSARLRSLLYINRRIST
ASHRQILCDHPDVTAVKIWTPTVQYLLFSVYIQPVAIYQPADVTTAQLILEEIQSSIQQHSIGIDKVTKLIISGDFNRHH
PAWSHQPVHHTFAEHAEELINFFQMHELQWCLPQGTPTFWSMSDPGKASILDLTVTNDPARLIKCHLYHDHYGSDHRGTL
SEWNLQPERNVGRKPKRAYDKADWAKIGQRILEVMGPLPKIHSTADIDRAVERLVESTSIIINQDVPAQKPSPYAKRWFT
SELKTQQIEVNRARRRWQDSCATLGITHLTTAALFQDMRQKRREWTRTVEKAKTTHWKQFLDEAKEGQLWKAATYMRPRE
SYASIPSLKTKPRHSEKPFFPKMAEPEEGNIAPAPAEILWEPITKEEIYRSLKAAKGTTAPGEDGIPTLVWKHLWKYLQT
AITHIFAKSVELAYYPRRWKQARIVVLRKPGKPDYTVPGAYRPISLLNTLGKVLEAVMAQRLSFWAETYKLLPETQFRGR
PGHNTEEALLVLTNAVDRAWSRSKVVTLVAFDLKGAFNGVNKTSLDTRLRAKGIPTTARLWIRSFMEDRHASINFDDFQT
EVTLLENAGLAQGSPLSPILFGFFNSDLVDQPVDYHGGASAFIDDYFRWRVGTSAKENLKTIQEEDIPRIKAWARRTGSS
FAAEKTELIHLTRSRKEQATGQIIMNGKVIKPSDSAKLLGVIFDKELRWKEHVQQAIKQATKVNIALGGLRHLRPEQMRQ
LYQACVTPVVDYASTVWHNPLRDRTHLRLLGTVQRTALLRVLSAFRTVSTPALEVESYMLPTRLRLKQRGQIVTASLSML
PESHPVHGVIKRARTRSTHIGTGSRFPLAETMRTMDLARLRALEKINPTPLAPWRTPAFTEIDIEPDREKAKENTAARQK
AAGVTVFSDASGQQNHLGAAAVALDQDGNIIQSRQICVGSMEHWSVYAAELMAIYYAISLVYQISQKKQEALGTGREPAT
ILTDSMSALQAIANSWNKSGQRIIQAILQSARELNTRGIPLRLQWVPGHCDDPGNDTADRLAKEAVGPDKLHPFQHLLSR
EKGYIRRKIREEWGQEWRASKKGGHLRQIDATLPSIRTRRMYGSLPRSRAYILTQLRTGHSWLATHGKRYGLQESDKCEC
RAKETVVHVLVDCPRLKDLRNILRRKIGSGFNNISDMLGGKMQGKEGRLNEAEHDGSILGAVLDFAEASERFRSRGPERP
QNRTTGT
>I-1_AF_gag#LINE/Tad1 171-1660  [Aspergillus fumigatus]
MARHNNQPGGPLQAALQETTTSATARALEGQKIFSPIAAFLDDHRRQNAGLTPRQLGALTALSNDLANIAQQHFNAYISG
VPLTNAPLPLTPAPAPAHGPASFPPSPPPSRPPSGLAQSTYATVTRSPPARNNAATKKTYSNTKTDRLATKLPPPDNRLF
VRLPENHLAKSMDAFAIHTSLRSHLGTNGKLLKGVQSIKTGLALLPVSTEALPALEAQKEAIAAFFKDCQIERSSRWISY
RVTNVPRKVGRLTGSQYSMIPVNPEILSSEITEAIGLNPVSITETATSAANPNTISSSWFINFPEDSKANLPVRLSLFGM
ITNAQLLVRKTKIVQCNRCWKWHNARSCARQPRCRLCGSTQHTEEGHSNRCSTQPPHTCPPRCLHCHGPHPADYEQCLLR
PSKAGTRCTKAQQAEIRKTSSLELAKARLERQCCMQVPEPSQDQIMAMNSRPSPFPFRTATPPPQEPLDSPPVTARAVRF
VSPKPQNSFEVLMNEQX
>83584378_Mpi_pol#LINE/Tad1 gi|83584378|gb|ABC24964.1| reverse transcriptase [Monascus pilosus]
MKIIQANVGRGGPSHDLLLSFTADIILVQEPWTKMAKHLTKTHPRYQLFSPTTRWEIRPRTLTYVRKDLPAHALPQPSSP
DITAVEVDGLTIINVYRPPNDSVTPSSPTRSIIHTLLQYPVPRNTIIAGDFNTHHPLWQPETQLHALSAGATALVEWLET
QGLVLCMEPGTPTRGPNTLDLVFANLPVVATVEDHLSTFSDHKTILAQLKWREPQPQHKLGSTNWEKARELLVPPDADLP
TDTLAEELVSRVQLAIQGASEYNTRRLPHTPWWTPELTNLLRQARQHPPDLQPLQKAISKAKANYWKEWIEQATTPTKAF
TLAKWQKPSNQLASPPLLVQGNQITTPQGKADAFLTHLLKKGVSLPNQLEEGPPNRPLDPMPLPTKEECWNTLCSPSPSA
PGEDSLTTSVWRELWPVIGDAVTALYHQSLEKGLVPQIFKAAKIIMLPKPGKRDLTQLGSWRPISLLSTLGKGLERLIAK
WMAVQAIQGKLLTPCHFGALPGRSAIDLVQVLVHRVEKAFQQGKVASLLLMDVKGAFDAVDHQRLLSHLRLQGWDERLLQ
WIQDWLSSRSACVQIGEANAKAPIKGGLPQGSPLSPILFLLYAAMVVAAYKASFCYADDLRILFVGDSLQETSQQLVETY
KAVTALGTEVGLPFSVEKTEIQHFSRKRKHPPPVVRLPDVGEIPPTSYTRWLGVLLDTKLTFKPHINWVFSCGKQLAQHL
QRLSNTQRGCPVASMRAAVLQCALPTALYGVEVFYTGQQQVANSLQSLLRIAALAILPAYKTTPTAALLREADLPDPKAL
LESTLQRAAARYAGLDAKHPIARIYAAPNYGYNTRLTRILQRIPTPAPERRWVEPRLPPLRMLPTHREGHISSPLAISVY
SDGSHTGQGAGYGYAIYYGSILVTQGQGPAGPRTEVYDAEIMGAVEGLRAAVGLPCTAYANQLNLFLDNLAAASLLADGR
PAPHRRHLTDTFHQLSKQWLSLPYILASPRRPVRVSWVPGHTGIAGNELADRLAKQGAAMDGSHIPPSPAYLRREAKQQL
HTATQAAYTRSAPQAYQDLGIRPHTKSSRAQEHKLPRWVLGRLIAARTGHGDFAAYHERFHHTDYLATCSCKKLKTPVHF
FFCPHTRKRWKERRKHTLAGPAKTIDWLLGTAAGAEEFSRIVQNTSFFTDICPNWAHLNTE
>RTEX-5_BF_pol#LINE/RTE-X 2593-6300  [Branchiostoma floridae]
MAHDVALRLTSWNIQGSLSKKCVEVDFLDSICKYDVVCIQETWLKPEDNFHIDGYHYFRSDRKLRKQSRRNSGGVAILFK
RNLAKGISKLHSNNSDIIWCKLDKNFFGFDRDVILGCLYLPPENSPIFATKKNTLFEDLTADIAKFNSGGHILLLGDLNS
RTSNVQEKLFDGLDENACEIQLKPRFNTDTVNNRYGRELIDLCSAANMILVNGRTIGDLPGKNTCIKYNGTSTVDYCITS
LHFFTSVQYFKVHDPTWMSDHCQISVSLKTNHSNFRHKTDEKTNSFPKRYIWEETSCEKFQEALRSSQTKNAIQQFISKP
YSVSQTKHVVEDFNNIIKITADLSLKSIRVLKRKKKPVNKPWYDQQCRDLKSRMRALAAEIRKFPWRQDKRQNYVYKVKE
YKKLIKKRKKQHNEGNMTFLSKLAKKEPKSFWKEINNLRNLENGSKVETGDEISISEWLNHFKTINANITVDTKDKEHAD
KIINSLEHETDNPLDFEITEEEIQNALSSLKSNKSSGTDSIINEMLKYGAPQLIQPFKKMFNIFLQSGHFPQQWSQSTLV
PIYKSGEASNPGNYRGIAISSCVGKLFTFILNKRLQHFLESSNLLSPFQSGFRKDFRTSDNVFVLKTLIDQQTSKPGGKL
YACFVDFRKAFDSVWRNGLFYKLLSLGIGGNFFRLIKSMYHNIEYCVKTPHGMSPYFQSFCGVRQGCNISPLLFNLYIND
FPALLNPISCDSLFLKDTPVNSIFWADDLVLVSKSESGLKECLRALDQFCSLWKLSINKNKTKVMIFSKNGRTVNNKQSP
FTSQGQTIEITNFYTYLGVDITPSGSFSRAIKQLRLKALRASFKLKSFLSSNSNPSISLAIDLFNSLVKPILLYCSELTG
INAQCRDLIFKGIPECQNETTRTSIARVLSPILGSEVDILRVSRLGNISEASTIYTRPILVRFKKYSDKLNVIYQSDTLF
RNQHITIEQPKISYEIPDLEYVLLNFCKILLHVPKSSVNAAVRGELGVFPLFVDSQTHLIKYWLRLHTLPNDRIVKKAYD
TSVEEGHDWATHVQDILCRHGFQNVWLNPAVNAKHFGNIFKERLKDTFLSGWREQLKSTNKLKTYSKIKKHFGMEEYLKS
IHNRSFRYSITKLRISAHCLEIEKGRHRNTPATQRLCPTCHENIEDEFHFVMKCPTYSKERETLFKNIRTKTHISLAGAE
SDIFHVLLSCSTHISVYVGQFLYNVFQMRDQINHT
>RTEX-2_NV_pol#LINE/RTE-X 1786-5286 [Nematostella vectensis]
FTCNQKKIRFGCWNLNGFNSRVVGNMLKFNDTLSTIKRHDIFGIVETHANQNSDLKINNYKHFVKHRDSTRYKKSGGIAV
YIRENISSGVKYIPTDNENVLWVKVCKNIFNLQKDIYLGTVYLSPANGRCNNYEEDILEELEFEILRLSLKGDVIIQGDF
NARTGILQEFALDDEQNDEFMGLPKDYQIDIPNNRNSQDSKVIDSRGRNLIETCTALNMRILNGRVVGDLEGKKTCFRYN
GSSVVDYIIVNNESLDIVDYFIVNPLEPHLTDHCSLSCSLNLKFTFKQKDNSENVQLSELKRLRWNNEIGSESKLLFESE
EVQTNLNAALNNNCVDTSVDLFTETLLSACENAGLRYQNNDIKESSVNKMWFDKECKNEKENLRSLGKLLSKQPDQRELG
AVLKEKKKSFKKLCRRKKYTHYNNIVNSIDFRNSKNTWKQINRIFNSNTHKQSHQIRPEEAAVFHQHFEQLNATIESQNT
MEEVEKTRINNRQGPLDHEFTELEITNAIKSLKTGKAPGADNILNEVLKCGEETLKKPLQILFNKILNSGEYPSSWSYGL
IVPILKKGDPSKPENFRGITLLSSLGKVFTSIMNNRLYNYLVERKIIKPEQGGFRKEHGTVDSIFILKSLIDKYVKAKPK
KKQNFLFTCYVDFSKAFDRVPRHKLFDKLERSGVTGRFLEVLKSIYTNDKSSVKIRNLLTPAFRCYNGVKQGCMISPTLF
NFYLSSLSEELNTVRNCNDVELNSRPISCLLYADDLVIVSKTATGLQKYLDKLSEFCDEAKLTVNLEKTKIMIFNNSGKT
MNNYLFKYRNSKVDIVKSYKYLGVHFSTFGNFSLAKQEIKKVGLKALYKLRKEMGNHFRDKITLTLRLFDTLVTPILLYS
SEVWGTDCNDKLEKDPIESVHTRFIRWLLGVNRYCSSNACRSEVGRFPMRLKAKCRAIKYWQKMINSDHSKLAVLAFLDS
LENNSKVTWVHKLKNILERAGLGYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRRDPRQKNKLRTFRTFKVVYELE
KYLTQINNVQHRIAVTKLRLSNHNLAIETGRHAKPYVPPNERRCTICKNGIENEEHFLVKCPTYNAIRKAYYSVIKDKTN
INLNAMTSERAFLFIITMDQRNEIINRETAKYIFDCTRKRFECLKE
>RTEX-2_DR_pol#LINE/RTE-X 2-2833 Fragment, via tfasty with RTEX-1_DR_pol, 3 frameshifts. [Danio rerio]
NGRVRGDSLGRYTYSSSLGSSTVDYMITDLDLFSFSAFTVKPLTPLSDHSQITLYIKRNKNTNIFSQSSKLYNIKNNYRW
VQDSSEKYRNAIEDPQIGLLLDKFMENSYPDNGDGVNLAVENINYIFDYLATISNIKTTKKTFKQKQENEKWHDFDCKTI
RKNLRQLANQKHRQPENTDLRLQYYEELKKYKNTIRKKKEEYTQKQLKTIEESVDSNNFWDNWNLLNKKKREQLTIQNGD
TWKNHFEKLFSKINMSTEQSLIYNKLTHTEQIFGKYQNPLDYPITEKELLDKIQVLPTKKASGPDGILNEMIKNINHKFQ
LAIMKLFNLVLSVGHFPDIWNKGLITPIFKSGDKSDPNNYRGICVSSNLGKLFCSIINTRLIGFLTEHNVLSKSQIGFLP
NYRTSDHIFTLQTLIDKYVHQNKNKIFACFVDFQKAFDSIWHEGLLSKLLESGIGGKTYNIIKTMYSNNQCAIKIGNKRT
EFFTQGRGVRQGCPLSPTLFNIYINQLAMLLEQADTPGLTLYDSSVKFLLFADDLVLLSPTEEGLQQQLDILHSFCQTWA
LTVNPKKTKTLIFQKKTRCQGKKHSFTLGMTKIEPAISYTYLGLKISANGKLNLAVNELKEKARRAFYAIKKSTQIEIPI
RIWLKIFQSVIEPIVLYGSEVWGPLLSHEFDKWDKNPVESLHAEFCRSILRVQRNTPSNACRAELGQYPLLMRIEKQSVK
FWKHIKMSDPNSYHFKALKNQEMDIEKSLLIQMVLKLQTQTNTTNMTNSRQHQDTDMLIHKIKPNQIINARKEEYLIYWN
EAAGKQSKLQCYLDLNRDYTTATYLSAVKDSKLRTTMTKYRLSAHSLTVETGRYRQNWQPRESRICPHCAQAEVETEEHF
LTHCTNYQHIRETFYTKLQSIYPQFTELDNKTQLQYLLGEKNECVLLATQYINACHKKREQNQ
>RTEX-3_ACar_gag#LINE/RTE-X 82-1408 via tfasty with RTEX-1_ACar_gag, 1 frameshift. [Anolis carolinensis]
MGNRKRNRTSPESTTHHKASKQLKIDELFGEGTVSISDLNTLFETTTDNNATPLILHDKANEPLSVASDNNLAAYHEGVS
LESIETDEVEENPLFTEIRQHTGQTITTDFVMNQCLLTAHTVVSIFERIKKIVGQLELLKIAVDRFTQKSIPLKESSAKD
NSTWAREEDNNVHQNTSELPTKELQMHNGNRILQANQTMLQIAHIGINKGKWNSFRAIRTSLSQLLNIHPHSIDMLTVEW
LPRVSAHDRILISFEQMTIPSMLMKMKLFLSSFQITPTRVFRDSSITPLIIPLHNSNCLRNPKETFRKNMLQSSPAKTLS
TLTEKQPRGLSRPSCNEQQDIACRLDHLKNMMFTIRDMAEPLIDLVPSVEAPHAMRDLAGGSVDALLAMNEDDITTISPM
HPLMPMRENQIPSTHELLPNQKAPAQTELLEIGNVSDPFTPA
>RTEX-4_BF_pol#LINE/RTE-X 2653-6207  [Branchiostoma floridae]
MCQTRNSDSRNKLRQYSFRKDHGFSFGLWNIHGLGRKVDDSEFIDEIDGFDFFSLLETWHTGKLYFPNFLHFCSSRKKSK
NAKRNSGGLVFLYKKQYSKFISKLESKTEDILWVKIDKQLLSTDRDIYLATVYISPNRSTVHSNRTYDIFDILEDEISIY
SCHGDVIVGGDFNARIGTLKDYVDDDCPTDNLPEDYTFDNPLPRNNMDLSNPTPFGKNLIDLCINSKLRILNGRTPGDVL
GKPTCHQPNGSSVVDYVLASENILLHKTSFFHVHPLTPLSDHCKLSLILHNNANNCSEQTTNNLPTRPHCKFVWGADSKQ
KFIETLNRYEYSSAIDNFLNRTYELTPNSIDSALKDLITPLQEAGKKSLVLHRSREGTHPRNKRPNKKKWFTESCAKARK
DLKELGKLLSKNHRDPFIRGLYFRRKKEYTRLIRKTKISYKNSILQQLNSHPTNNPSVFWDLVKQFKTSDSIPAEDSIDK
QALHTHFQSLYGRDSTPNVPETNNHFQTRIKNKLLELEEQSASFNSLDTVIQNQEIIQAITQLKNNKASGSDLILNEMLK
CASHMLVKPLTKLFNLLLSSRYFPQQWRVSHIVPIHKSGPKENPNNYRGISVISCLAKLFTTVINTRLTNYLKENNLISP
NQAGFRKNFGTNDNLFVIDTLISKYTNANKRLFACFVDFRKAFDCVWREGLRYKLLSSGVGGKFYSLIKSMYSNPQTCVK
TKAGLTPLFITDKGVRQGCNLSPTLFNMFINDLVNDLDDTDCAPPSLHNLLVSCLLYADDVVMLSESETGLQRALDKLNA
FCTKWNIHVNLKKTKVMVFNKTGRTVKNIKFSLGVESIQITNSYTYLGLILSSSGSYSLAKKQLSLKARKAAFSIKPLIR
TSLSPKALLKIYDTCIKSILLYACEIWGKDFSNDKCPVETTQNRFCKNILGVHRNSCNQACRAELGMFPTDIDISVRVIK
YWLRLKQLDSSTHPLQVDALLCQEYLMGNSYKKNWLHHVKEIVDNTGYSFLWNINYPTLDNKNICTLLKRRLTDMYVQTF
FHQLSLDNGKLRFYKSVKSEYVMENYLYHNEFNERSAICKIRTSAHPLEIERGRYKQLPVHERLCTYCPMNAVENETHFI
SQCTHYETERKTLFQTVATISPSFYHLNDHQKTTFLLKAQNPTIIQNVGQFINHCLQRRSQTRQ
>RTEX-3_VC_pol#LINE/RTE-X 1078-4938  [Volvox carteri]
MSREAKDIRVLLWNVWGLSVAKLTDPSFLRIAQDHDVLVFTETHCSAQAGKPAKALALPGFQLHVAERACRGGAGPQTGR
LHGGVSVYIRDAIARDVTLLRVDTDIAGCESIWLRLGGKQTGQDSTLVGACYVSPRASVVHHASLRAHESDGQAADEVFD
HLATVVGALRQSGERILLLGDWNARVGGLPNHLSDIPDLDYLDDLGEEVGCPFVDGEAYRALLGVPRRSLDQEHNAFGRK
LLELCRVSEVVILNGRAPGDTEGRLTYESSRGGGSMIDLVLASPSLYPCVRSFRVLPQQSFYREERRLSDHNPVSLHLAS
VWRPDRPPTRKPKPTFLVSEAHRYTDMFYNPEAPPVVGVRAVVDSLRAGQIGVTQAVDTIERILLGCFGDAFRPGPVSNG
KAAWWNDECAAAKQAMLQYRSDVMKWGCAAPAMGHTSFQELRRQFNRAKRNARRDHRLRALELFIATCKRDAKTLWQRLN
GKPASRCNVEDVSEWTDYFDRLYNASASFDEVQEARVCAILNCINLGAGSQVGAAWRDSEPVHARRSMADTMNGPFTLEE
VEAALSSLSNGRSPGLGMVPAECYKYAKRIPREGDEDRVSVNVIAPAIRDLFQHIWDTGDVPDQFCVASLSPLFKKGDPR
VKDNYRGLAVGCAIAKCYATVLDRRLAAFGDKDGVRCRFQAGSRQKRSTVHQLFVVRHLKSRYERPGSNQALYACQVDFE
KAFDRVPRASLWQRLEERGVHGPMLAALKASYERVLQRVKVNGRLGSIFASLQGVKQGCPMSPNLFGFFIEVIADYLEAR
DGMDEWFNTRAHECPVINDRRLPLLFYADDLTLFATSLARLQFSLKLLIEFCAAFGMRCNVRKCEALVVAASVDVVKRAF
EGVRLMLPLRTDGSLWHPPMVGSLLVPSPINWCGRVRYLGLYWGPASPFASCVNELLEAGRRAMFGLSNRLDENRVWAPA
VRLQAFDTQVRSVLCYGAEVWGPDRIVSVLRLGKGVLPAGKSYFDLALEDGMVQVQRDFCLRCAGLKQVPYKLLYRELSQ
LPLQYFWLRLALCFWNKIVKSRGSVYHDVLVDDLRLALLSDLKVDCWSSKVLIILRWLGHEWPACDSVSQKVDVYSSQLI
RVGEVLERLSAFLLSDWDQFSQGGDPRVFQGKGVSLCRYHNWMGSPSPAREGSDPTGYLRVYLPVNQLRMVAKFRLCCWP
LEVNKGHHRPRECRTCQVCTSGKVEDEYHVLMECEAYTELRNRFLINVEDTDMRKVFLNTNPRKIATFLTEVFDERQQRA
LEPHGS
>Penelope-12_HM_pol#LINE/Penelope 1621-3555  [Hydra magnipapillata]
NNGSIFTPTDEPRTFTPITMKDLFDMHNIRGSFHYKIRVEKTRATAEMINRMITNKSDYDLTEAERQVLSRGLGFIQNDQ
YVPEKTFKDAISKLKRNMLLRVHFKDNGGLPRQTPMKRKLDTVWNPPASNNANLNLFFERIKSETDTVLNERMNIAHPNL
TKNMKEAILTLKNNNNIIIKQADKGGSICILNRRDYEEKINTMLADDTTYKLLLYDPTIEMARNVVSTIDYILFKGVIDE
KTANYIRPNNPCRPPLFYGLPKIHKTGIPLRPIVSACDGPTDHLSYFVTKFIQPLAETLPSYFRDSTQFLHMLQNQPLPP
QKYIFVTADVTSLYTNIPHKDGIEAIKLLFNKIPHDLRPPNSPPVAYIQIMIDTILTNTTFQFDDRNYLQMTGTSMGTRM
APPYANIFMGTLDEAVTGQFKDSITFYKRFIDDIFFIFTGTIEDLEHVITFMNNLHPTIKFTFNHSDISIDFMDLTLYKN
HLDKIQSTIHRKPTDTMSLLHFSSYHPHHITSGLIHSQAIRYNRLISDSHHLYKELRTLARQLVLKGYHLDIINRNITKA
LLHTQKDLIHKNKEADDTHIFPIVTPYNEQGIRINNAILHNWHLIHNDPELCTLFPPVPTLTHTNTLSLRDRLIRTKYTA
NHNN
>CR1-9_DR_pol#LINE/L2 335-3196 via tfasty with Maui_pol, 2 frameshifts and 1 stopcodon. [Danio rerio]
IHRSLIYPTLNQHHTVKLNSLLVTCALLNCRSISDKASYLNEIITDNKLTFFSTETWQAPAISPVKSSCSQWLQISRPSQ
TTWQGGGLAVIYRHDIRLKQLDFHNTNSFEYMVLKADCLTIILLYRPPKALSSFFSELSELLTLACSLSSSILLLGDFNI
HVDTACSNTTQLLSVFECFNLTQHVCFPTHTRGHTLDLICTSKGDITSISASETGISDHKLIDFSLNLPLRSNCPKTTIT
YRNLKAIDTVSFSTSIVSSNLSDVINISSPSMILSNYHSIISEVLQQQAPIKTRYVPATHSSPWLTPELRTLKATGRQLE
RLYRRTGLTVHYLAFQDHLKSYKSALTLARSKFISTTINKSSNRPKSLFNTINKLTSPHLKGPxLQLMLFCCSYLDYLLD
KTNAVHQCVPTDTELSHPSCLSSQSLSCFSLTTPDSVSKLILKSSSSSCHLDPAPTSLLKLCHSVISPVISHFINSSLTH
ASFPLPLKTAAVTPVLKKPNLDPSILSNYHPISNLPFISKLLESTVATQLQSFLVDNNLLDPFQSGFRPLHSTETALVKV
VNDLLLSGDSGSLSILLLLDLSSAFDTVSHDLLISRLSDLGVSGTALSWFSSYLSDRQFFISVMDFQSPTVPLKRGVPQG
SVLGPLLFSVYLIPLGLILQHHGLNYHLYADDIQLYSVCTPTASAQIENISACVNDINDWLTSNSLKLNMDKTEIIFIGT
PALTSNIPTSYSCEIAGLHIKTSTSVKNLGVIFDSTLSFQSHIKSVTKSAFFHLRRISQLRPFISSKDAETVIHAFVSSR
IDYCNALFIGLPASLISRLQYIQNSAARILTHTKRSAHITPILYDLHWLPVAYRIKFKILLLAFRSLNNLAPSYLCNMLV
PYTPTRSLRSADSGLLAVPRYRLSSMGGRSFSVIAPKLWNSLPHSLRSANNISDFKSLLKTHLFSECFASDLPN
>CR1-7_SP_pol#LINE/L2 1-2433 [Strongylocentrotus purpuratus]
DFNLNLLQCDENTSCQDFLDLMLSKSFAPTITKPTRITEYSATLIDNIFVSGTPIVKSGVIVTDISDHFPIYTVISNVIS
HSNPNTNKCSGIRYLSEPDLRRLKEALTITDWYAVYNCDDVDTSFDNFMEILMLTLNSFPTRQQNCSNYKKHPRLAWISK
SLLKSINRKNTLYYKYKKNHTVKSKLKYSRYRNILTTSLRLAKKNYFTKQFNVNKGDIKNTWRVINNALKSRRVSTHISN
IMINENRIQDPLVIAEEFNNYFANIGPNLAQNIPVSDLHFQYFLETKNTNSMFCTPILEHEVIDIVKNMKTKKSAGNDGI
TNFILKEIIGEIVSPLTHILNLSIMNGIVPKKMKIAKVIPIFKKGNAQDIGNYRPISLLTSFSKILEKLMYSRTMQFLID
FDILSDTQFGFRQKHSTTHALLMFLDKVAHAIDDMAHTVGIFLDFSKAFDTINHDILLYKLSHYGIRGKALEWFRNYLTD
RKQYVSINGHDSYQRSVSCGVPQGSLLGPLLFVIYINDFRNSSEIMSFILFADDTNIFYSHRDPQYLLRTVNSELKRIQA
WINANKLSLNVSKTHFMLFSNCIKSLPGNILIDNTNLNQAESTKFLGIYIDSDLSWKIHVNYLCKLISRNTGILNKLKHE
FPTHILLSLYNTLILPYLNYGILAWGNGTKAQLEKLLIIQKRAIRNINHAGFLSHTSQLFFNNKVLRIGDVYVYSVGVFM
YQLTINELPAVICALFVRNNTIHSYSTRQRNLFHLPLTRTLFAQKNITFTGPKLWNDLPIEFTESTSLYSFKRKLKCHLL
SNYALMVEEA
>CR1-10_HM_gag#LINE/L2 142-744  [Hydra magnipapillata]
KKKTKTEXPIKIKTNKQLIKYEKIQKDIEESLTFYQDSXDKKVSDLEKKKSSNANIGENEKNKFRQLEDRQRRNNLRIEG
VKENDNESWDDTEIKIINIFENNLNVNGVIIERAHRTGIIEKKKPRTIVIKLLNYKDKVKILKNANKLKGSGIYIDEDFS
LETTIIRKKLLEESKMHRKNGKYSVVIYDKLIVKEFIKKK
>CR1-11_HM_gag#LINE/L2 141-704 Via tfasty with CR1-14_NV_gag and L1-1_ME_gag1 frameshift and 2 stopcodons  [Hydra magnipapillata]
KELLEIHENTILKIFXDKFDKMENKMxVLKXENKILKNEIADIKSAMTFINEKYEKETKELYDFKEHLKHNMKVNEKALN
NDEFKDELAELEDRSRRNNLRFNGIEEKENETWEESEKKIKEXLKXKLGITNEIxIERAHRTGKKNEVEMKKRRTIIVKF
LNYKDKETVLXKYRLLKLWNEKLYINEDFSERTMEIRKNXFKEAKDLRAKGKYAKVVYNKLVTRD
>CR1-10_HM_pol#LINE/L2 751-3904 via tfasty with CR1-20_SP_pol, 1 frameshift and 2 stopcodons  [Hydra magnipapillata]
MIFLRFYIIFLNFNIALSYFLFKMADETVLTNLNFNSFESKKSILLNNYSDPDINFYNNDEVIKNINPLYYNPNSKNIAN
GMDDNSFSMLHINIRSIQKNFESLKQFLYKIKINFQIICLSETWCHDKNIENNSNFQLPNYKVIHQVRASNKEGGGLCIF
IKNSLLYKVKPNLSSTTNDYESLCIEIINETSKNIIIHALYRPPSGSIKVFENHIKKIIKNKSSINKTVYFVGDINLNIL
DYDKNKNIKNFFNVIFQNSYIPLINKPTRITKESATSIDQIITNEFINKKIKTGIFKTDISDHFPIFIISQKCIYNAQNK
RKKIITTRLINDNSIKHFHNLLSCVNWDTLKLNLNANKAYDIFLTEFLKLYNKAFPEITKFIKTKTLLNPWITKGILKSS
KKKQRLYNKFLKKKTLKNETDYKNYKRLFESILKRSKKHYYSEQLIKHKNDSQKTWQIIKEVIGKKNLYRNLLPKNLKFN
NKYIVNKSLVAETLNQFFVNIGPTLASKIATTQLNFKSYLTSNNINVMANYKLTEKELLDAVSLLKPNESLGFDDISSNV
IIKSIKYITIPLLHIFNLSLKQGVFPEKLKIAKVIPIFKSGDPSNVANYRPISILPCFSKILERIMYNRLYSFLNINNIL
YNKQFGFKSGHSTDHAIIHLVHDIFKAFDEKKFTLGVFIDLSKAFDTVDHKILLxKLKNYGIKNTNLAWFKSYLTNRKQY
ISYDGGKTEYMTITCGVPQGSILGPLLFLIYINDLNKFSNILNSILFADDTNLFYSNKDINILFKTVNKDLxKLTEWFKS
NKLSLNINKTKYTLFHRLHKKENIPLKLPNLFIDNSLIKREQSIKFLGVILDENITWREHISIIENKISKNIGILYKAKQ
FLNQTCLKNLYFSFIHCYLNYANIAWCSTNATKIKKLFSKQKHAIRIITNVDRFSHTKTLFNKLNILNVYQLNLYHILIF
MFKLDNKISPILFNSFFKKINHIYPTRFSKNNYIQSKTHYSATKFSIANRGPKLWNTILNNELKTNSSLNQFKTKLKQKL
LINENELNFF
>CR1-4_SP_pol#LINE/L2 1-891 via tfasty with CR1-1_DR_1220-4303, 2 frameshifts.  [Strongylocentrotus purpuratus]
YTQPIQQIVQKHSINYHMYADDLQLYFICKPDPENVKKIENCIADVRNWMIESRLKLNDAKTEFILLGNSSSSGKIKVSH
VQVSSAPVSPVHQARNLGVIFDSAMSLETHVSNCVKLANCNLRNIRAIRQYLSPQSTQQLVHAFVTSHLDNCNSLLFRLP
ANQINRLQKVQNAAARLVTNTRRSSHITPILKSLHWLPVQQRVIYKILLLTYRALNDLAPEYISSLLSPHSAGRSGLRSS
HNIRLKEIRTKRNWGDRAFASAAPSLWNKLPFSIQTANTLSTFKTGLKTHLMLNAYC
>CiL2_pol#LINE/L2 1495-3225 [Ciona intestinalis]
TQYTKAFVIDGKPTTDPLIISNKFNDHFFNIAADLVKQIPPTNTHHTHYLSQKSQNSIFICPTTPTEIKNIIMDLKSKSS
CGMDGIPSRLIKSTPENILLALSHVFNLSLQTGTFIDDLKIAKIIPIYKKGNPKDIKNYRPISLLPTFSKILEKLMYIRI
LSYLNSFKILFTHQFGFRKGHSTGHATSLLVNELTNELEKNNSVLGIFLDLSKVFDTIDHKILLSKMSHYGIRGTALNWI
QSYLSNRNQIVEFNGVMSSNQNFVNLGVPQGSILGPLLFLIYINDYPNCLIHSKTIMFADDTSIFISGKTSLVISQLANT
DLENTLTWLCTNKLVLNTDKTKFMYFSNSPNTKLPHVPIEIKINNNKIEQVNSFRFLGITITENLSWKLHITELIKKLRT
NLAIVRKIKPLVNQPTLITLYHSMMLSHIRYCISTWCNGNKQLISKLQILCNKFIRMTFNLGKRENITSTMNQHGLFTIQ
EMYQIEILSFMNKCNNNKLPQPLIDIISQKPPHLIRKTRSYAKFFIPFCNKLTSQQSMRYIGPKLWSSLQINIRDQPTLR
RFLAAVKQHLNLNAMT
>TX1_pol#LINE/L1-Tx1 3085-7011  gi|104220|pir||B32494 transposable element Txlc protein 2 - African clawed frog [Xenopus subgenus]
MALSISTLNTNGCRNPFRMFQVLSFLRQGGYSVSFLQETHTTPELEASWNLEWKGRVFFNHLTWTSCGVVTLFSDSFQPE
VLSATSVIPGRLLHLRVRESGRTYNLMNVYAPTTGPERARFFESLSAYMETIDSDEALIIGGDFNYTLDARDRNVPKKRD
SSESVLRELIAHFSLVDVWREQNPETVAFTYVRVRDGHVSQSRIDRIYISSHLMSRAQSSTIRLAPFSDHNCVSLRMSIA
PSLPKAAYWHFNNSLLEDEGFAKSVRDTWRGWRAFQDEFATLNQWWDVGKVHLKLLCQEYTKSVSGQRNAEIEALNGEVL
DLEQRLSGSEDQALQCEYLERKEALRNMEQRQARGAFVRSRMQLLCDMDRGSRFFYALEKKKGNRKQITCLFAEDGTPLE
DPEAIRDRARSFYQNLFSPDPISPDACEELWDGLPVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFF
WDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSY
TVPGRTIFDNVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWS
LTAPLAFGRGVRQGCPLSGQLYSLAIEPFLCLLRKRLTGLVLKEPDMRVVLSAYADDVILVAQDLVDLERAQECQEVYAA
ASSARINWSKSSGLLEGSLKVDFLPPAFRDISWESKIIKYLGVYLSAEEYPVSQNFIELEECVLTRLGKWKGFAKVLSMR
GRALVINQLVASQIWYRLICLSPTQEFIAKIQRRLLDFLWIGKHWVSAGVSSLPLKEGGQGVVCIRSQVHTFRLQQIQRY
LYADPSPQWCTLASSFYRQVRNMGYDRQLFIIEPEGFLRNLSTLPAYYQDTLKTWSMVSVLRQGATEGEDILNEPLLYNP
SFKTRMLESISIRRRLCQAQLTRVGDLLDFEKSDWVDSQAVMQRMGFLTTRVPHRLLKEIKDTISPDSHTFIDGVLHAGE
PRPPWNSSPPDIIIAPKTRQSPQAPPSPNLSQLENFPLTRFHDITRKLLYSLMLHTVHFLALISRYDTIWRRVLNEGERP
QWRAFYSSLVPRPTGDLSWKVLHGALSTGEYLARFTDSPAACPFCGKGESVFHAYFTCARLQPLLALLRKLYLQFWLHFS
PHVYIFGRPVSRDNKEKDLLSNLLLALAKLVIHKSRKQCLEGGNPLPAEVLFRVLVRSRIRAEYTQAVFTGRLKEFADQW
AIDGVLCSVSPDLVSVQTILTLPYLSAL
>CiL2_pol#LINE/L2 4-3222 via tfasty with L2-1b_Cis_pol, 2 frameshifts and 1 stopcodon. [Ciona intestinalis]
CCNCCNRFHIKCLNNIPRDISPSNLKKYPNKIHDIWSCQTCSIIPDLPFSQLSDSDFRSLLSIPTFSSFDPVKLNNVFTN
YNINIQETFEMNPQDIYVTAHDCKSYLSKKNKFTTLSLNMRSLANPNNFAKLEALIASLNFKPDSVSITETWIVENQPGH
YNNLQGYSFISNNRSKCRGGGVGLYIKSNLNFHIKQCTSIMEEKIFEPLFVTLEDISFNTTSNSSQSSSLICRVIYRSPG
IDPKSNLEFRTYLSSVLDKLETRNSKCIIMGDFNYYLINENNTNTNDFIDLMHDYCYQSSIINKPTRITDKSATAIDHIW
TTINSSQIKAGIITDPISDHLPIIQAINLKINNSQSNISSRNFSQKNIINFNGKLADMDISKVLQETEPNLAYSQFQQQY
MTEFNSSFPETKVNKSDKSKWFNKDLYLLNRTKQKLFKKYLQRNTEENKKRYNAARNKYHHAVINGKREHYRKLFSANRL
NMKATWKSINSLLGKIxTQYTKAFVIDGKPTTDPLIISNKFNDHFFNIAADLVKQIPPTNTHHTHYLSQKSQNSIFICPT
TPTEIKNIIMDLKSKSSCGMDGIPSRLIKSTPENILLALSHVFNLSLQTGTFIDDLKIAKIIPIYKKGNPKDIKNYRPIS
LLPTFSKILEKLMYIRILSYLNSFKILFTHQFGFRKGHSTGHATSLLVNELTNELEKNNSVLGIFLDLSKVFDTIDHKIL
LSKMSHYGIRGTALNWIQSYLSNRNQIVEFNGVMSSNQNFVNLGVPQGSILGPLLFLIYINDYPNCLIHSKTIMFADDTS
IFISGKTSLVISQLANTDLENTLTWLCTNKLVLNTDKTKFMYFSNSPNTKLPHVPIEIKINNNKIEQVNSFRFLGITITE
NLSWKLHITELIKKLRTNLAIVRKIKPLVNQPTLITLYHSMMLSHIRYCISTWCNGNKQLISKLQILCNKFIRMTFNLGK
RENITSTMNQHGLFTIQEMYQIEILSFMNKCNNNKLPQPLIDIISQKPPHLIRKTRSYAKFFIPFCNKLTSQQSMRYIGP
KLWSSLQINIRDQPTLRRFLAAVKQHLNLNAMT
>CR1-3_DR_pol#LINE/L2 1805-4720 [Danio rerio]
CVSGACLDNSVFIRCLQNKQEPSVSVAFSTQICVLLRDRKPKTLSDRIANHSNLVSIKCISETSVVKTTKTVKLALLNIR
SLNNKSLLVNDFINTNCLDFMLLNETWLDDSCSAAVLNEAAPLNFDFLSVCRANRRGGGIAALFKDVYECKQVSFGDYLS
FEYLSIALKGSPRILLIIIYRPPKYSPAFIEDFTELLSIVTSEYDYFSIAGDFNIHIDNPEINAVKELMTVFNTFDLTQH
VQGPTHNRGHTLDLLITKGLHISSTVVKDVALSDHFCIFFDILITPAIKDRSVSVRKRCINENTSEQFMKAISLAPSISA
DSVDSLLDLFNSKIENVINDIAPVKVRKRTGKERVPWRNSRAVQMKKRQCRKAERMWRKTKLVVHYNIYKDSLQAFNVEL
KTARQTFFSNLINNNVNNARTLFATVERLTNPPSRIPSELLSVSKCNEFANFFTDKINNIRKAISSSNQPSCVDIKQTQP
QLEKSDIMSDFMAINGKILEEMVQIIKTSTCSLDTLPTSFFKTVFTCSEMDLLKVVNDSLLSGIFPNSLKTAVVKPLLKK
SNLDNTLLSNYRPISNLPFIGKIIEKVVFNQVNKFLNFKGCLDNFQSGFRAHHSTESALIKIINDIRLNTDSGKITVLVL
LDLSAAFDTVDHSILLDRLENWVGLSGTVLKWFRSYLEGRGYYVSIGDHRSRWTPMTCGVPQGSILAPLLFNLYMLPLSQ
IMRKNQISYHSYADDTQIYLALLPNDYSPIDTLCQCIDEIKNWMCQNFLQLNKEKTEVIAFGNRDEVLKVNAYLGSKGQT
TKNKVKNLGVTLESDLSFNSHVKAVSKSAYYHLKNIARIRFFVSSEDLEKLVHAFISSRVDYCNGLLTGLPKKTVRHLQL
IQNAAARILTRTRKSEHITAVLRSLHWLPVTFRIDFKVLLLVYKSLNGQGPQYITDMLTEYKPNRSLRSLGSYKLEVPRV
QSKQGESAFSH
>CR1-1a_AG_gag#LINE/L2 441-1775 [Anopheles genus]
MECLACSAVVLINDDPILCAGKCGGNFHRRCVTPSLSKTAAKIINENKNVLYMCDRCLEHKSGLAGMDVDVSGSYDLLTQ
SIKNLESNVSVWISSALEKGIETLKTELCAQVERKLEQTLRESLSAVECSNKAKEALRATFDDTKARETVEDESWATVTK
KRKRTNSGNSNVQTIINRFDTGNVNSTPKISDKVTGPILANKNKNSKTLVIVPKVGQSCDKTRADLRAKLDPRKQQVSEF
RNGKDGQVFVQCSAQVKLDELRKEVENILGDEYATDLPLSRVKIIGMSEKYTDSHLVDLLKSQNEGIPWKQVKVIGMFEN
KIYKYQKYNAVLEIDYESDLCLAKLGKINVGFDRCKISKSVHVMRCYGCGQFNHKSTECKNKQACSKCGDEHKTSECTSS
SLKCVNCVLANSVRNLKLDVRHAANDYNCPMFKKQIERRMQLSQ
>CR1-13_HM_gag#LINE/L2 25-780 CR1-51_HM_gag 92% similar.  [Hydra magnipapillata]
MEISIKNIEKLITNKLEEQKKSILKETEKLLKEQEKSFASIMSANLKILSERIEKLEVYVNNNKCNVTNIQKDVSDIKTT
LNFQETNLMEKVVQIKQCHDKDLNILHKKTIDLENRSRRNNLRIDGVEEKPNETWSDCENTVKNIFKKQLKIDGEVIVER
AHRVGKSRDSKLPRTIVLKLLNYKDKNKILNAVKNLRGTGVYINEDFAKETIEIRKKLWEEVKRLRSEGKYAIIKYDRIF
YREFRSPNIKF
>CR1-45_HM_pol#LINE/L2 818-3893   [Hydra magnipapillata]
MDSNETLNFESSFYNFFQTNDFLLDDESDPDLNYFSNSGALQNKCNYFYTHEIKGFLDQNNINTIHINIRSLKKNFEIFR
NFIEETCNLFNIICLTETWCSSDDVNFFTNFELPGFNVISLARKTNKRGGGVLIYVKNNLRYFTRHDMSISDADKEVLTI
EILTNKIKNKILSCCYRPPSGEIKNFNSFLCNDVIKKSNHENKFIYLVGDLNLDCFQYHVNNNIKRFYNGIFENGAIPLI
SKPTRITQSSASLIDNILTTDVFNESLKKGIIKNDISDHFPIFFSINIDNKLVPNEKRVFKKRFFTNENLKSFKEQLSLI
DWSIINTSDDINLVYNSFFKSFYDIYETNFPEVNLNLKAKSIKSPWITKGLRKSSKIKQKLYINYLKSKTNENKIIYKNY
AKLFESLKKKQKKNYYLNLLNIYKLNFKRTWFIIREITGSKKCTSHSLPNTVKHNNEFLYDKRQITEEFNKYFVSVGPNL
AKRIPIANGLMNDLRFPLNSYLNSFELSFEEFENAFKMLKSNKAVGPDGINGNIIISSFDVLKDILFKIFSISIKQGIFP
HALKLAKVIPILKSGDIENISNYRPISLLSVFSKVLERILYNKIYSHLTLNNLLYSNQYGFQKNNSTEHAILQFTRNISD
SFENSQFTLGVFIDLAKAFDTIDHEILFKKLEWYGITGKILIWLKSYLNNRKQFVYANDNVSSSLLNISCGVPQGSILGP
LLFLIYINDLPKASNLMTIMFADDSNLFLSHNNIFTLFSNMNIELVKISEWFRLNKLSLNIDKTKWILFHPYGKKHQLPS
NLPFLFIDNIVINRVLVTRFLGVYIDENLTWKCHIANLCSKISKSIGILYKIRNVLDKNTLIQLYYSLIHCHINYANIAW
GSTYKSKLKPLYRQQKHVARLINFKDRFAHAKPLLYDMKALNIYELNVFNILCFMYKCKTNLSPVSFRNLYLQRDRNKYI
LRNDNLIRQPFSQTNFGKFFISFRGPFLWNSIVLNTSKDFSQECNFDSFKQNLKKLIFSTENILIYF
>CR1-40_HM_pol#LINE/L2 876-3971   [Hydra magnipapillata]
MANDFITKDFDKLRFDFFKTQNNIFANNLYDDDLFIFNGPDSPYFDTKTFKAELHNNIDEFTVIHINIRSLNTNIDKLKI
FLFECKYSFSMICLTETWCSDENSYTNSNLLIPNYNLISYERKANKRGGGIITYIHNDLNTKIRNDLSISDSNSEVFTVE
VINDTTKNLLISSCYRPPDGDIIMFSSFMKQIYTTSNVEHKKLFCIGDMNINYLSYHEHANTKIFFDDMIQHYIFPIINK
PTRVTPTSITAIDNILTNSIQDPSLKVGIIKTDISDHFPIYFSLSQQATRVNNLKIKIIKRSINKFSTQKLKDSLAVVNW
SKIYHECNLGHTNSAYNNFINIFLNLYNKHFPKVEKEIKAKYLTTPWITQGIRKSSKQKQKLYIKYLKNRNHFNLSKYKQ
YKNLFEKIKLKSKKLYFSKQIQKFKGDNKKIWDIIKEIIGKDKKNSNQLPPKVLISEKEFNNKKIISEKFNKYFASIGSK
LASKIQPTNNSFENYIEDSRCSLVFKELEYEELETAIKTLKINKGPGIDNIPANIILNVFPEISKPIFQIFNSSIITGIV
PDYLKIAKIIPIYKSGDTSFLNNYRPISILPVFSKLLERIIYNRLYKYLTTNKILNENQYGFQTQHSTEHAIVDLVNRIS
ESIYEKKFVLGVFVDLSKAFDTINHEILLKKLEKYGLKNHTLQWFKSYLYNRQQCVITDDNYHSKLLKLTCGVPQGSILA
PLLFLIYINDLPKVSSKLEFIMFADDTNLFYSSTNIKDLYDNVNIELQKLNIWFKTNKLSLNIEKTKYTLFHSNQQRNTL
PNILPSLKIENIVIERTHETKFLGVIIDENLSWKSHINALNTKISKNIGLLYKAKPMLSQSNLKLIYFSFIHSYLIYANI
AWASTHITKLKTLYRRQKHAVRLIYHKDKFTHTEPLFKEMNVLNIYQINIYQNILFMLKFKLGQVPNHFLNNFFINNVNK
YNTREKGNFITPFKKTKLSQFSISYRGPYLYNKLVTKNKSICNLDSICNQNFLKKKLKNLILNLNRYSEFF
>CR1-54_HM_gag#LINE/L2 117-887   [Hydra magnipapillata]
MSITLVEVKKLITEMFMKFKIETEEMLKQQENTFINIVSSNTKILNDRLDRVELNILQNSTKIASIAKEVEEIKESLNFH
EDLFNKKIKTAIDCLAKENLANFKIQNNNNELIRINNKLREIEDRSRRNNLRIDGVLENDNESWAECEKKVKEIFNNILG
VKNVNIERAHRIGKVVHNKHRTIILKLLDFKDKTEILNNSSKLKGKNIFIYEDYCKETNIIRKTLHEKMKIERQAGKYAY
ISYDKLIVRDWNSNKK
>CR1-65_HM_pol#LINE/L2 1001-4051 via tfasty with CR1-18_HM_pol, 2 frameshifts.  [Hydra magnipapillata]
MAETINYNFFKTFSGENVRHFSKNIDPDVNILDNYSLETNYFKVHEVTSILNKSLHYISLLNINIRSMSKNFENLKLMLN
NISIKFSIICLTETWCQSEDMSNSNLHLTDYKSVHQPRKNGIGGGVCIFIHNSLTYKKVDNLSVNNSNCESLTIEIINQK
EKNSFITVLYRPPNGSYNQFENDLRRILTQTSKKHLYLLGDFNLNLINLNTDNHVKNFINTLSQFSAYPMINKPTRVTRK
TSSIIDNIITNNYSNSTINSGIIKTDISDHFPVFLTTNTKCCINKKPITVYIRHVNKGSIAIFRQLLREINWELLNDCND
TCSAYDFFIRVFTRQYEKAFPKVQKTIKSKSVHSPWMTKGLLRSSKKKQKKLYEKYLKNKNYENETKYKKYKNYFEKIKK
QSKKNFYSGLLQKSFGNAKKTWTIIKEITGKTKITSSNFPNRLKTDKGEIFNKKTIAERLNNFFINVGKNLAKEISPSSK
TFQSFLKKSDFIMDNSELSIEELRSAFDMLQKNKSAGLDEINTNVLKSVFDIIELPLFIIFKLSLKNGDFPDQLKLAKII
PIYKNGDDSLESNYRPISILSCFSKVLERIMYNRIYNFIDKNNILYPKQFGFRRNHCTEHAVMDLASNILKGFDGNNYTL
GVFVDLSKAFDTVDHEILLYKLKNYGIQNTNIKWLESYLQNRKQCVTYDLTYTQLEVISCGVPQGSILGPLLFLLYINDI
HLSSKFLNFVLFADDTNIFFSGSNLKFVFSTVNTELINLNEWFKANKLSVNIDKTKYILFTKPSKTDNIPLKLPDLFINN
IKVKRVHSMKILGIIFDDHLNWKNHIQFVENNVSKALGILFKTKHLLNIMCLKSLYFSFIHSHISYCNIAWASNYSSSLK
KINTKQKQASRLILNAGRYACAEPLLKKINVLNIYKLNIYQNLLFMFKIYNNMLPTYFQPHFTLINHKYSTRYSISNFLI
PTTSLRKTDFSITCRGPRLWNYFLNRDMKNMTSIKLFKRAVKLYLLDLNNKNILLYF
>CR1-61_HM_pol#LINE/L2 817-3894   [Hydra magnipapillata]
MDDYESITFNFHDKYLKSNFNSDPDVNFFNDVNTCCSYFYPNELKEFLNKNGTENQKIRILHINIRSLNTNFEKFCDFLD
ETENIFNIICLTETWISSNDFKNNSIFHLPGFETILLERQTNKRGGGVLIYVKEHIAHNIRNDMCVSDGDKEIVTIEILN
NKKNNILLSCCYRPPDGASENLSFFLQQNIIHKGSKENKITFIIGDFNMNCLIYNKDKKIKSFYDEILMAGAVPLINRPT
RITKTSTTLIDNIFTTDIYNRKLKKGIIKTDISDHFPIFLTIHTVSSNNPERQNIIKKRVFNESNIKSFQYQLSLLHWKH
INFNEDANTIYNKFFDTFFSIYDANFPLCEKITKIKTLNSPWITKGLRKSSKIKQKLYIKYLKTKSNENQQKYKNYQHLF
EKIRKKLKKNYYSNLISKFKNDSKNTWRTLKEITGKQKTNSNSLPKVIKINKTNIYEPNEIANEFNKYFIDIGTKLANKI
PITEKNFSDFLEPINNSLFIDNLHSDLSFDEFERAYKSLKRNKATGADEINGNIVIDCFENLKCILYKVFRASIQQGVFP
DQLKIAKVTPIYKNGKKSNISNYRPISVLSTFSKILERIIYNRTYNYLNLNKLLYKNQFGFKKNCSTEQAITQFIREISD
SFGRSQYTLGIFIDLSKAFDTVDHKILLKKLKFYGINGKLIKWYQSYLENRKQFVFYGDYFQNEKLIDIKCGVPQGSILG
PLLFLVYINDLNKASNLMSINFADDTNLFLSNSSIYELFSNMNNELNQISNWFKCNKLTLNIDKTKWILFHSLAKKRFLP
NKLPKLFIDKIEIKKESVTRFLGIYIDENITWKYHIDYISTKLAKSIGILYKVRYYLSKQNLIQLYYSFIHSYINYANIV
WGSTSKSKLRSLYHRQKHAMRLICFENRFSHSNILFKNVKALNVYELNVYNILCFMFRCKSERPLSNFKDLFTYKAINKY
ALRNNNLLIEPFCQTKFNQFCINYRAPYLWNKIVVPNFDLSISFSVFKTKLKNYILSTGNIYKYF
>CR1-35_HM_pol#LINE/L2 832-3927  (CR1-11_HM_pol very similar and broken)  [Hydra magnipapillata]
MDSNYQNNFDSLSFNFFQSNDLVLDTNSDPDLNYFCDVGALRNNCSYFYNKEIKEFISRDHLNVIHFNIRSLKKNFENLC
TIIEETSNIFSIICLTETWCEFDDAKSNLNLHLPGFNMIPLARKANKRGGGVLFYIKENLRFFIRPEMSISDDNKEILTI
ELLTNNSKNILISCCYRPPSGHIESFNAFLCNDILKNSFKEKKLNYLIGDVNLNCFEYHVNSNIKKFYDDLFEHGSIPLI
NKPTRVTSTSATLIDNIITTDIFNETLKKGIIKSDVSDHFPIFFSINIDNKLIQQHKKVIIKRFFTDANLASFKDQLSLI
NWNHINSSFEANEVYDTFFQTFYEIYDVNFPKREFIKTNKSLKSPWVNKDLRKSSKIKQKLYIKYLKKPTLENKIIYKNY
AKMFESQRKKFKKRYYYDLLEKYKHNSKRTWQIISQITGNSKLKLCSIPNTIKVDGIFLYEPKQIARELNKYFVSVGPNL
AKNIPNMINPINDYVFPLISSLNKFEVSSSEFESAFKMLKTNKAVGPDDINCNIVIDSYDTIKHILFKVFKCSINQGIFP
DQLKIAKITPVFKGGEPSNVSNYRPISILSVFSKILERILFNQISNHLAINNILYINQYGFKRNNSTEHAIVHLTRSITD
SFEKSEFTLGVFIDLSKAFDTIDHEILFKKLEHYGIIGNALKLLKSYLKHRKQFVYIDGSSSQDYLNIDYLNITCGVPQG
SILGPLLFLIYVNDLHEVSKLTTIMFADDTNLFLSNNNIDKLFYDMNIELIKISDWFKLNKLSLNIDKTKWIFFHPRFKK
HLLPSNMPLLHIDNIQIKRVVFTNFLGIIVDENLSWKNHIGHLCNKIAKSIGVLYKARSVLNKHSLTQLYYSFIHCHINY
ANIAWGSTHKSKLKPLYCQQKHIARIINFKNRFTHSRSLLFNMNVFNIYQVNVYNVLCFMFKCKTNSSPASFFDLYSLKE
KNKYSLRNDNFIKQPKFQTNFGKFCISFRGAFLWNQIILKNFDFSHEWNYYMFKRKLKKVIFSIENIFIYF
>CR1-18_SP_gag#LINE/L2 360-1148 [Strongylocentrotus purpuratus]
MSINTVKAVLAELFEKEEFFQAISDGVEKKLGTILDRLIQQEACITEFVSTGKVRDAQIRDLETKLSSMETRCDKLESDL
MGVQNGKDQQDQQFKSLQKELNSRNEEAHSLKRNINSLEQYSRRNCVRIFGVKEKPQENTDEIVYDVARQMGITFDPSDI
DRSHRVGKVPADKARSRGIIVKFRSSKCCQQLIANRRKLKGTHISVFEDLTASNFKLLSDAQACPKVLAAWSLGGRIYVS
AATTNGTTMKHLITRKEDLQKL
>CR1-17_NV_pol#LINE/L2 3-2660 [Nematostella vectensis]
GFLIHHVPRAGARGGGVALLHKSQFKLTRLSVDVNYTSFEFTDCMITHSSTRLRMIVVYRPPPSKKNRFTVSKFLDEFSS
FLENVATTIYPLIIAGDFNFHLDNSNDRSAARFQELMDTFNLSQHVQQPTHKNGHTLDLVITRPAETSVRNVMVTDPSKS
DNCAVHWTSPCQVKPSTERKEISYRKLKSLDREAFMEDIMVSPLFCKDYTNTEELSNCYNNVLTKLLHKHAPIKTCTITI
RPAAPWYCDNIRKEKAKRRKLEALWRKTRLEVHRQMYTEQCVHVNKLLYDSRMQFYAGIIDENSTNQRTLFSTIQKLLSL
NTAKKLPSHTCKRALADTFIIFFTNKVQVIREGFPTTETDNNEQILNFEQTQSNYAIPELNEFSPTTVHELSSLVSNMIS
KSCSLDPLPGSILRDCQGVILPLITNIINLSFSEAVVPLSLKEAVLDPILKKDNLDHEIQNHFRPISNLPFVSKAMEKVV
AIRLNQHLDCGGLHEIYQSAYKKGHSTETALTRIQNDILRAIDDGQSVILVLLDLSAAFDTVDHDLLIGRLKHRFKIKGL
ALSWLRSYLSDRSQFVKIGNERSESKKLVCGVPQGSVLGPLLYSMYTAPLADIIRKHGLNFHFYADDTQIYMSFNPLSDK
EPALSRHLVESCIDDINRWMTANKLLLNGDKTELLVLHARHRPKPNLSFINVGSDVVEISDSAKNIGTWFDSEMSMDKQV
KNICKSAFFHLSNIAKIRKYISFKHCEILLHAFVTSRLDYCNSLLSGLKQEHVRKLQSVQNSAARILTGVRKFDHITPIL
QELHWLPIPERINFKILLLTFKSLNGLAPSYLNELLTPYVPRRSLRSEKKALLVEPRCNLKTYGYKSFSHQWLKPIFSEV
LFNMF
>CR1-29_HM_gag#LINE/L2 199-915   [Hydra magnipapillata]
MAKFTVSQIKELLELHESTLLKIFNDKFEKIENKLISMQVENTTLKNEISELKKSAEFINEKYEKILNEVNDSKKKASTS
NLNKTSIELEHSDNIIKDKLAELEDRSRRNNLRFNGIQESENETWEESEKKIHELLNSRLGINNNIIIERAHRTGKLDYG
GKMKNRTIVVKFLNYKDKQTIMENYSKLKLWTERLYINEDYCERTTELRKKLFIEAKELRTKGKYAKVVYNKLVTRDA
>CR1-34_HM_gag2?#LINE/L2 1100-1610 Fragment of a second gag, C-terminal fraction of gag formed through a recombination, pseudogenic fragment, or in silico artefact? gag2 product is not (closely) related to the first gag protein. Lines up nicely with begin of pol.  [Hydra magnipapillata]
YPRDNQTDEYKWPVGTTLICGDSILMGINEKKNAxKLGKVKVRVFSGATIEDMHFNLVPLLKKEPSKIILHVGTNNCTND
SSESALAKLKDLVSFISKSNPSCSIILSTPIRRFDNAKAQLTSLHLAEKLKLTKFNIIDNSNLSNEHLGLRGLHLNTRGS
GRLAMNFIAYL
>CR1-29_HM_pol#LINE/L2 970-4050   [Hydra magnipapillata]
MDSVLLDNFKLTFNFLQTNKYLIDERSDPDLNYFSEAGALQNNCCYFYAHEIKDFLERDHLNALHINIRSLKKNFESFCL
CMKDTLNVFNIICVTETWCDSDEVNYDCNIHLPGFKIISLARKANKRGGGVLIYIKESFQFFTRLDLSISDDDKEILTIE
ILTQKNKNILLSCCYRPPSGKIECFNTYLNTNIMKKADHENKLIYIIGDYNLNCFDYHVKQSTQKFYNELFKNGAFPLID
RPTRITEKTASIIDNIVTNDVFNESLKKGIIKSDISDHFPIFFSINIKPKVLPNEKTTFLKRIYNEANLLSFHEQLSLLH
WKDINTSSDVNFAYNQFFKSFYEVYDVNFPKREINLKTKSVKSPWITNTLRKSSKVKQKLYIKYLKEKTIESKTIYKKYA
REFEKIRKNLKKKYYSDLLMRYECDSKRTWQILREITGKTKIKSCALKNGIKINGDISYDPREIAIELNKFFVTIGPNLA
RNIPNIKKTSDISSIALANLDFLELSFEEFETAFSALKPNKASGFDDINGNVIKNSYKAIKDVLFKIFSLSIRQGIFPDQ
FKIAKITPIFKGGDLTNINNYRPISVLPVFSKVLERIIYNKIYTHLTNNNLLFNHQYGFKKNNSTEHAILQLTRSITESF
EKSEYTLGIFIDLSKAFDTIDHKILFKKLKNYGITGNVLKWIKSYLSNRKQFVTIDASSPISLLEITCGVPQGSILGPLL
FLIYINDLYKVSRLKTIMFADDTNLFLSHTNITTLFQLMNVELNKISYWFKLNKLSLNIQKTNWTLFHPPSKKKLLPYEM
PSLFIDNIEIIRVNVTKFLGVYIDDNLSWKNHIENLYNKTSKSLGILYKARNFLNKKILTQLYFSFIHSHINYANIAWAC
TNKSKLEPLYRHQKHAARLIHFSERLTHAKPLLKKMNALNVYQLNVYNTLCFMFKCKTNSSPVSFHDLYMLKDKNKYFLR
NNNFIKQPFFQTNLSKFCITSRGPFLWNKIVLKNFSQDFIQQCNYNSFKRKLKELIFTIDDLSIYF
>Tx1-2_BF_pol#LINE/L1-Tx1 1305-4982  [Branchiostoma floridae]
MSSSNSLTSKLTFISLNVRGLNNKLKRQKIFRWIHNQKTDIAFLQESFSAKENEKLWANEWGGKIVFSHGTAHGKGVMML
FNPEADIDLEQTLLDQDGRYIMVNGRVNDNDVSLINLYSPNKRTEQVKFFKEIHKLAQENASGTVIIGGDCNISLTELDK
TGGRPIDDKNYAIKEMQCLLKSFNLADVWREKNPNTRQYTWQNENIKCRLDYWFAPYNLVNLSECSIKVAPVPDHRAVIM
TVKSPRYQKRGPGFWRLNNSLLEDQTFDKEMTDLLTNIKDKLKDIQQPGIQWEMIKMEIRSLSIQYSKNKARSRKNEEKE
LEEQLNSLMRETDEFDDPEKQKLICETKERLESIQTHKTKGAIIRSRCNWNEQGEKSTKYFFNLEKRNYKEKTISSLTLE
DGSITTDPKTILLEEAEYYKKLYTSSYPDMKESTYFLDNDDVKKLNTEQKTSCDGEMKEVELRKALQAMSKNKNKSPGCD
GITIEFYIKYWNLLKDYLLNTINDAYHNNLLPISLRRGVIRLIPKKGLDTSNLDNWRPISLLNVDYKIVSKALTLRIERL
LPFLIHEDQTGFVKQRYIGTNIRRIYDTIDYYDKKKKPGLLMFLDFKKAYDSIEHSFILKVLETVNFGHNMIKWVKLLYT
DITSCVLNNGYISPWFSVHRGVRQGDPLSSSLFIICIEMLASAVRADINIKGLQVYGRMQKLSMYADDMTSLLLDIPSAL
KLLETLNLFKDCSGLDLNYGKTEAMWIGSNKDRQDKPLPIRWPDGPIKALGAHFGHDRHRCYKEDLDKNYTKMVQACSIW
KQRNLTLIGRILIVKTIGISKLIYICSVMHVPPQFVKQVNEYIFKYIWREKPPKVKMKTLIGKKCQGGLKMIDFNVMNKA
LKAIWIKRFVMDPSKEKEHLFARWGGFLIFRCNYATSQLDLNDMPLFYKDVLVAWEEVIGYEPKTHRQICSQVLWNNRFI
LVKNAPIFYKIWIDAGIIILNDLLYGDGSFLTNKDLHNLYGLTMDSRQILNYNSIKAAIPKNWKDNIKNNGKKCASKTII
EYTERIHPLTTTCKQIYDTLIEKQVVPPTRENEIIRKIGKDNIEKVYTTAFNVTKETNLQYFQYKIIHHFLPTNSWLKKT
NLVKTDRCNNCKEKHTIVHLFVYCKEVKIFWKQFCLWWRSYENQDIVLDENLIVYGVCCHRTASTTLIYYILLAKYCIYL
CYVKNMKPNFAHFKNRVNNSIEIAL
>Tx1-1_SP_gag#LINE/L1-Tx1 2-529 Fragment [Strongylocentrotus purpuratus]
VKCQVCRQSGHMRNECPENRQALRSNLATPDASSHTALEDSTTQDENTQQTNTNKIRQTRLADFVSKLVHRPAQNSNADS
ASAEVLDLRSPRRTRSASRIESSSTYASDGAIHYAKPQSKTRDEIKHAQETVSDDQQSESGEEDSSLSPESPPKTSTTKG
RMPLKRKKKSPKKKK
>Tx1-2_CQ_gag#LINE/L1-Tx1 153-1349  [Culex quinquefasciatus]
MANSVRKNTAKLVFGPGIKVPSYLDVLKFSMDTLKLSAADIHSIYKDENGGQFYVKLIDEETFSAFIAESDEHYQFKFED
GTTARVAVEQASRVFRYVRIFNLPPEIDDATIQYVLGQYGTIRQHVRERFPNELKVNIFTGVRGVHMEVAKEIPAHLYIG
HFRARIFYDGLKNKCFFCKAEGHVKQNCPKMAAISTGSGSGSGSSGGSGSSAPSLGRPAKPIIDFGQPIAPAMTLLNQKK
NDDTQNPITTTSTQAVPSASTTTTVAVPSASTTTSPSVSTPAPISSTTVAPSASTTTTKQTVDTNTNDGVLDALRPGGVS
EEHIDKADTDAMDAEISELDRQTLLKRTKSSSPVSSEGDAGKLGGKGKGGKGKGGPTGEGDGFIPVPNGKRNKKKKTT
>Tx1-3_FR_gag#LINE/L1-Tx1 65-1300 [Takifugu rubripes]
MLSGCKSPLLRHVVSHRRQVHMILNNRAEEFNYRFIVRVDDFDYTLFATSSALKCFNCNEEGHLARACPSRVAPDAPAAE
PAAPAPVAPPAPRPVPAARRRWLSAEGSSAAPDGAAAESQVEEKRDECVRESEVSGGSEIVEMVVEMNGESGESGGKVDL
TGEVCDLSGVMSEVVCDSNELGENGEVMGETVELGEAGETGDRIQTGEQGTVGQVMGGLDXPGIAAGERGEGEVSTGERG
EGGVSTGEQGEGAVSTGERGEGAVSTGGVVRGEAVSAGEGTSGASEWWLVPAKRRNKRKSAMKDKGGKTGRLEDTVADTD
TSDCKSMSDGSELSGTMPDGQDXDLYPPSLFKKFLTQTKGMKGLDLGTYFPDRLRFIRSASFLIRNKATSGLTDPEIYRL
RKHMGKARKQLN
>Tx1-2_Crp_pol#LINE/L1-Tx1 1732-5166 Tx1-4_AMi_pol near-identical[Crocodylidae]
MRHISLWKIALMALTIASLNVRSLYGRQRWXSMYTTLQGLDAQVLGLQECGIPWGRNYRYLEKRWEVGPSWWGGSNENKA
AGVGFLAREGGLKIKDQQVLEEGRLQKAVVEVEGVEVTLYNVYAPAERTERVRFFRKMGMCVGGGGPRIVMGDFNCXLEE
GGRIGIGQGVGMDSTGKWLRGWIKDEGLRDIWEGTGVFTRVDPGGRGQSRIDFVLVSEGLAIRSKRLIDVSFSDHRVLWV
EVGIGQGLKQGRGVWKLNVSLLDDPQECIAFQRAYRQWQTLQPFFPTRWDWWVEIKRRVREWFAGVGRKRARQRKKELAR
LQGEVQRLWEELKKGAAVKGEWERAREGVRNWFRTRMQERMFLAKAEWVDEGEEWGRFFALRVRRKKRVMGAVRTADGGR
VEDVDGVLREVTRFYGDLFRRKAVRREQLEGLVGSLEAKVGEEGREGLIKELTETEMLGVLRTMPLKKTPGGDGIPVEFY
GKFWDLVKGDLLALFKEIMDRGRVGEGFAQGVVVLIYKKGGREHIKNWRPITLLNSDYKLFSKILAARMGEVLPQVLGGE
QMCVVGGRRTTQAHWVLRDTLSYIADRKWNTIVASLDLQKAYDSIGHEFLFRVLAGMGMPGEFVGWVRALYGRATSRVLV
RGFLGEAFAVDSGVRQGCPLSPGLFVCAIEPLAQRIRSDRVISGVRVPRGGELKVLLYMDDVTCVVRDEVSLGRVVKHAN
EFGEVSGARVNVDKSVVLAVGNWGDLGKFGLKVEREELKILGVWMDTQGKGKRAWEVLEGRVNQTVGLWGTRGLSSRGKV
QVIKQCLLPMILYTAMVYPPSWLQARRVQRALCLFFWGGKTEKVARTELYKEEGLGGWGLPNIEVFVYAHFLKMVVREAR
GAPGMVSNFCVFWGGRLLRRLGLFGSGWRGAWAWQMSLPYARLGSFVAREGLAGLGIEGLADARKVLKFMRGKQRMSDVG
XLRTEKVGRVWKGLVGKEWKGEHEELAWRAVRNALPVRQVLHRWRLSRSPKCPREICXEPESVAHALWDCFYAQKVWGKV
ATYLKETGRGTGITIENVLYGLTEGTDGSWGVRVLITCTKVALWKVRSLLALKGSCFSTXECLQLAMHELHFYRGRGKHG
TEGGDTALWQGLDFRGLFQPRIGIG
>Tx1-1_BF_gag#LINE/L1-Tx1 241-1452  [Branchiostoma floridae]
MAARDDISRLQDTNLWIKIDAVGMPKLSEFDIVEALYNTVQNELDDSIKPEEILGAQYLSQKRTWVINFTCLDAKAKAIS
VGRVVVGSKSYGILDFQKTGLRKTEIRISIHGIPHSVSDDEVAQWVDSRAERTTEVLRHQKKNRNADSPFQHLYSGHRFC
YASKITNPFQRYGTYSIPDPTDTGSLIDIEVTVFHDGQHINCKSCKSEDHAFHECPHRITCHNCGKKGHTKKWCRAERSN
PSRERRDVEQKVQQGLRAAREASNSRSTSASRAVVNNKNSGEDQDWTDWASGDPDETAESLVTGDSDGAENTRCETESIA
NPPHQEQAGLSGGTNQRRLTRSTRPAPTSTEDTRDQGQRRQPGTSRSTRKRKNVLTPPDKSKPDKLYKDDGRHNDQRRNK
DNG
>L1-15_DR_pol#LINE/L1-Tx1 1444-5436 [Danio rerio]
MMKNQIWCNLFLVKVAVFLIVSFIFKTSFTMRVFNIGTLNLNGARDSQKRMCLFEFIKMKRLDVTFIQESHSDNLNEINW
KKDWDGQIFMSHLAYNSGGVAVLFSKTVSPLSVETEEIVKGRFLKVKVKFEHATMVFLNIYAPNKGAERIIFLKKFCDVI
NNVDSEDLLFLGGDFNCTENDKMDRNHLEPHNASQKEMKNLVQVCDLCDVWRNVHLNDRQYTWVHSKDNQISMARLDRFY
MFKFQINYVKDCRIIPVGFSDHCAVICKIFVNSVKVKSAYWHFNTSLLNDENFKEFFSVFWENFKKQKQMYSSLQQWWDC
GKIQIKQLCKEYTFNVTKETMRAMKELEKSITELLNTTASTNNSTDFEESKTKKDLLADLLNVKAKGALIRSRFQNISEM
DAPSKFFFNLEKKNGKSRLIHSLKSETGEDITDSSKIRKYAVNFYSSLYKCEVLQRDVENSVFFENLSKVDDESNAMLEL
PISQDELYTVMMSMENGKSPGIDGIPVDFYKVLWPVIGEDLFLVLNDSLNKGSLPLSCRRAVITLLPKKGDLQKIGNWRP
VSLLCSDYKILSKALAVRLSKVLDQIIQPNQNYSIPNRSIFDNIFLIRDALEVAKLFGINCGLISLDQEKAFDRVEHEYL
KKVLKVFGFSTHFIKMIEVMYSNIQSVLKINGGLSAPFDVQRGVRQGCAMSGMLYSIAIEPLLHRIRAELKGFSIPHCNA
QVQLSAYADDVIVFITNTDDVRRLECIINNFKKISSAKVNWEKSEALLIGDWKRDPPLLPGGLKWKRGFLKYLGVYLGES
DFVQQNWNGLLEKIQSRLQKWKWLLPQLSYRGRTLIINNLVSSSMWHKLACVDPPAGLLPKIQGELVNFFWDNLHWTPQS
VLFLPRDEGGQGLVNLVSRGATYRLQFVQKLLYGPENLVWRPLAQCILRGINGLNLHASLFLTDNVHLDLTGIPSFYKSI
FKVWGLFKHSQADSTTSLFWLLEEPVLLGSRLDVTKDDTPGLKELLISNKMTKLRDIVDKAGFGLRDAENVALYMGIRSV
RFVTKFLNVLKSFLNEKEKILIEGYSQGIIFPNDQDCFPDIRLTPKIENSGINSPLLCFKENGNVDFSTVKGKVLYKNIV
KLNNKCTLKERSDTVWRDKLCLVEEEKPEWRILYKPPLNKRSGDLQWRILHGAIAVNAFVTKINSSVSDQCPFCLERETI
FHCFMYCKRLAPLFDLLNVLVSLLGFLFTKQCFILGFKYKRQNKYKCQLLNFIFGQAKSAIYITRKNEIEKRNGKNIVVV
FKNLVKSRIIVDFNYYKMMKAINVFKIEWCCDDGLCSVINEELFFINELI
>L1-8_CQ_gag#LINE/L1-Tx1 146-1294  [Culex quinquefasciatus]
MTSVRPRENTFKVDLSVFPKRPSFEEIHSFVHDVMGLRIDQVKRLQMNHVQNAAHVKCDTLKTAQDAVEEHDGRHEIELN
KVKYKVRLQMDDSTVEVKVHDLSENVRDEELIGFLRHYGDVHCIKELVWGENFAYKGISSGIRVVRMTLRKHIQSFVTVQ
QEKTLVTYRGQPQTCRHCSRLSHPGITCTDNKKLVGQKSDLSDRLKAAQSTDSTSYATVVDKGTAIINSLLPNFVATNLN
QLNQAASESKQKELDTTAQQPSCSHLSTATDGVEQSSSSTITPAVAEDDSMSDETIVPVANETELMDQDLQQRGYDDSAQ
FDATSPVDVSGSPFKSPPLPLPIKQVHSSVSESDESSAEGSEFQKVKPRRGRGRPKKPRTDSV
>L1-53_XT_gag#LINE/L1-Tx1 118-1257  [Xenopus (silurana) tropicalis]
MASSADVRGVPASTEVRMKDSVKFTVEERFRAEKGLRFIGEKVLFGLCGLKKEEILCIQDFPKAGVYDVTFTSEVVCQNF
HHSFVRLKDDPCFEGIHVSLLYAQETKLLFIHLYNPHVPIEDITQFLKRFCDSVKYVGKTTNELGVWNGRRKFVVVLKAD
ENGPAGLLHPPANFMIGPHKGYLFYRDQPRFCRKCRCYGHVQDECKVEICRHCGSKDHVTAGCASEVFCTLCGKSGHVYR
ACPLSYANKAKAESNKKQDAGREVPASLVEAETSEVRVQRSSVRGSVSATADDSRSEEESGRVILWSETPPVEEVEVGVS
RAKRIKSCGKPVNLSQKIDEFSSSEQSGAFSVEMECSPIVPAAQRPRSKPPDGSGSHDNG
>L1-N2_CQ_gag#LINE/L1-Tx1 146-1204  [Culex quinquefasciatus]
MTTLRPRENTFKVDLSVFPKRPSFEEIHSFVHDTLGLRIDQVKRLQMNHVQNAAHVKCDTLKTAQDAVDQHNERHEIEVN
KVKYKVRLQMDDSSVEVKIHDLSENVRNEDIVAFLRQYGDVHCIKDLVWGDSFAFKGVSSGIRVAKMTLKKDIKSFVTIQ
LEQTLITYRGQPRTCRHCGRTSHPGMTCTDNKKLEGQKNALDERLKSAQSTSSSYAIVVDKGTDKPNDVPTPSAPQTPLC
PISSRVTDEVEQFFTLAQTESSSPTLVEDVQMEAEDDPIVKDQCTQQTPEDGQPEDNVTDSVSMFKVPALPLSTTTVQSG
ISETDESSSDGSGFQGVKPKKPRGRPKKLKSKT
>L1-54_XT_gag#LINE/L1-Tx1 184-1452  [Xenopus (silurana) tropicalis]
MEKEENSAASPARFKNTVQIVLPEERRGSDGINIVMEEMIMRVGGFMPKDIFSLPEFPKRGLYEVVFHSTEDYRKFKRKY
YANKNDHVFKDVEVKFLHSDTVRIVTVQMYNPYVPLADVVRHLKKDAEEVVFLKNIENRFGVWNGKRLFKVKFHESDLFD
DGISHPQSNFRMGAERGFMFYSGMPKYCQRCNEFGHIPQDCESGIRMCGNCLEFGHITKDCKSEKKCSLCKELGHMYREC
PERGMDYAGAVKGGKQPSVEAGGEERVAVQKEKKQAAELSTQVREIRSEQPQSLETEVEGEGKEEMAVEREESEVLQEES
LSGVPYVGLTLGDEFCLSGLSVFERLSRDAEREDDERADNKRHKPDSDCGSLRVVEEMEDQEDTVSDISVEVVARRKVPV
SGERLSQTPEMERYGGKSKDDVT
>Tx1-4_AMi_gag#LINE/L1-Tx1 59-1693[Crocodylidae]
MEEVERRRVAGLLEEAARRRALIEEQYGESSKSSEVLRESAMKTATGELTEGVAEEEVGVWSTVGRRGKVVPSETKKKSD
AELLEGSRERAGQQQKQRQSWAESSEAAGKVPESSYCLWGEGDPRRTVKLRVKATLSPEGVKGKTTMLRADFMIRVLFED
LKVNPKDLSCVVAFDNFRHWNITFWRQEAYSAFWARYAEVAGNEDLRGLHFETGQKARERVLYFKMYTDDLEPEDVRRWL
EGRVQKILDIERVLDQWQIWTGAWRSRVVLEEDLRCPGGVRHLPSVVSIGPHRGYITYHGQPKLCSRCGLEGHLAAFCSL
TVCYRCGGMGHRAKACKEKLKCTVCGGEGHLQRQCPLSYANKAREPHAAEERSEQDPGDAEAGHLDMDSFIVEETPEAEQ
RDDVIEAANQLTESEEEPQMEEDQSEGAGEGAQESEPAGMDLELPGDKGKEPGSVKRKKKRSAKPKKKRVEEEGGKVRET
EGGALGKEGGKSGELPVDRRDVEEGGREEGVGFLSPTVIEHLARATGMRKVGGDTSELSSGTDET
>Tx1-15_CQ_gag#LINE/L1-Tx1 152-1405  [Culex quinquefasciatus]
MEPKRENTIKLRFGAGARNPNNGEVFKFFTKQQWTSDVLSAMYRDDFCVFIRFKSDELMQGALVQLGNRVNFEYDDGTTV
WVNVTAANGTFKYVRIFGLPPEVDDRQISAAMCKFGTIQLMVRERFPVETGFPIWNGVRGLHMEVTAAIPAQVNIQHVKA
RIYYDGLQNKCFACGALDHLKANCPNRKPVNGRLTVLTKPSEGSFASIVTNGTAALPLPTPTMVVLNKPGGSQEAGTKGN
GSDLADQQPAGQESAVQQPAAQVVPDQESLEDRPANGSSTDGASGRSDADVGELGGTESTGKQSNEQSALLLNPLFSDEI
REVADSEMVIINPGDNERSDETMENAEAWSEQKGKGKKKGKRGRPKKSVPDTSGSDTRGGKQFIVPATLKDLLLSQERRS
RSRSRAVSEGGRRRGKK
>Tx1-15_BF_pol#LINE/L1-Tx1 1826-5593  [Branchiostoma floridae]
MTQVEVHISSFNCNGIGNSIKRREVFTWLRDKQHHIICLQETHSTLSVEKRWQNEWGGSMIFSHGTSNQRGTAILFQNSI
KPCIHQTKTDKDGRWLIVDLSLDEYRFCLVNIYAPNEDSPEFFFNISEELDDFSESNEHLIITGDFNTVQNPLVDRLATN
TTYHPKAFESISELKCKFDLQDIWRFRHPDTVRYTWRRRRQASRIDYFLVSFSLINRINNCKIADSFRSDHRLISLSFVT
ADFPRGRGYWKFNTSLLEDKSFHTKTVEIMKEFFSINSGTANPHVVWEAAKCFFRGHCIKFSSFKNKQYLSREKTLIDDI
NALQTELDSTPSSPDSVLDALDQKQKELELLYSQRVQGVMTRSRAKWMELGDRCSKYFLNLVHRNYTRKNIQKLQISENS
FTCNPTEILERQTEFYSSLYSFKDPPVPLTPENCKDFFPEDYCRVLSENQRQSCEGLITEDELLDAINSFSSGKSPGLDG
IPVEVYKQFYSVFKALMLECFNFSLTQGFLTNTQRHGAISLLLKQGGNGQDKDPTLLDNWRPLTLLCCDTRILSKCLALR
VKSVISHIIDKDQSGFIQGRFIGENIRRILDIIDHYEKEQKPGLIFISDYKKAFDSIRWDFIIKSLNFFNFGPQFSAWVK
VLYNDITSSVLNNGYISQPFCLHRGVRQGCPLSPYLFIIAVEMLAIKVRSNEDLTGLSILGKSTKISQFADDTDFPFTPT
LASFYALLKDLESFSCISALTLNFEKCRILRIGTLKNTNFKLPTHLPFQWVDGNVEVLGVHIPQDLDTIVDLNFEPRLAK
LDRLLYPWRIKGISLFGKVTIINSLITSQFTHLFQVLQTPDKSFFQQYERKFFSFIWNGGPERISRKTIYNSIENGGLNL
THLYAFACTIKASWVPRLYFNQDWSTTWVIRLHPSLGSSLFPFFQIRSTKHLKLSPFLLDVLDAWFKYQYKPPTCAAEVK
QQLLFMNDSILIDSVPIFMNTFINRNIIFVNDILNDMGTISTYEEFSRKYDAICDYFKYKQLISAIPQKWKSMLCGNVFE
SVCKPVQRNSCWLKQVKINKDMYQFFLSYYNLIDISHNVQLKWLYLFDTPIPWKQVYSSIIFCTIDSSTRFFQYKIVHKF
LPTNKLLYIWKCIDTPLCSFCHEEEETYLHVFWECPHLTPFWDKIKNWYHSKTTINLKLNGFNIIFGNLHFGTPPIENLI
TLLAKIYIYRCRKPSTLNFDSFLRYVNFFNKVEYYVALKKGKLDKHLGKWGSLCS
>Tx1-15_CQ_pol#LINE/L1-Tx1 1569-2098 N-terminal fragment [Culex quinquefasciatus]
MNFVYTIATINLNSSNCKANKGLLKDFIMNHDIDVAFLQEVSYEDFSFVYTHNALVNISSDKKGTAILIRKTLEFSDYIL
DLSGRITSVIVNNVNMINIYAHSGNNMRKERDHLFTEALTIHLNKPKCAFTLIGGDFNCVLDAKDTKGTQNNFSSGLKNL
VDLLSLQDIAKTRKAN
>Tx1-17_BF_pol#LINE/L1-Tx1 1090-4695  [Branchiostoma floridae]
MRGVMILFRKNTKFVVHNCIKDNDGRLLILDVSLHDTRVCLVNLYAPNSDDPAFFEDIVNKIATLEECSENIIIAGDFNT
VQNTMLDRAGRNPTEYHPRAQQKILDMVLELDLVDVWRFKHKNTVKFTWRRRHQASRIDYFLISFSLLTNVVSATIAGRL
KSDHNVICISVQTTTFSKGKNYWKFNQTLLEDATFVKETEVFIREFFENNNGTSDPLTVWDTFKCCLRGHTIKFASNRYK
MYSNKEADLTKQISELSKELDETDTPSDSLLEEIKTLQSELESLHERKTEQTHYVRKADWMEFSERCNKFFLLSHRNYSR
KNVTNITTSDGDNTQDPLQILANLRSFYSTLYSFKEPPKPLDEKNCSAFFQSTDNVNKHLNSEQQNSCEGPITEKELWIA
INSFKNGKAPGLDGLPIEIYKVFFSSLKQHMLQSFNYAYEKGQLSNTQRVGLITLLLKQNSEGQDKDPSKLTNWRPLSLL
CCDVRIISKVISLRLKNCISDLISEDQTGYLKNRFIGENIRRILELIEYYDTNEKPGLIFIADFEKAFDSLRWDYMFKVL
NYFGFGESLIKWISVLYNNISSKVINNGHISDAFPLLRGVRQGCPLSPYLFILCVELLATKIRTNEHIKGLKIHTLETKV
SQFADDSNFPLQPEAQSLVALVEDLKNFSIISGLKPNFDKCTILRIGSLKNTTFSLPCDLPIKWTNGPVQLLGIMLGLGT
TGYTEKLDQNYWTKLAKIDKILLPWRGHSLTLFGKIALVNSLIVSQFTYLFMALPSPSAKFFKEYEKKIFNFIWNGRPEK
IKRKVIYNTYDCGGLKLIHLPTFDLTRKASWIPRLWQAKTPLSKYLTDFPDPVCKLYPFLQLSKYHIDCIFTKFSRSVSP
FFINALKAWLSFQFKPPETHQDIQSQLLWLNSNITIDSKPIHFRKQATGQILFISDLLDTNGKFLSYKELSLKFGKTLQM
MEYNQIISAIPSTWKRHLKDKPLTIGPNAPFISNYSWLGARKINKDIYMTTLLTNNVVQTPVKIQTYWEEILDIIIPWKQ
VFRLVYKTTICPRLRFFQFKMLHKFLPTRKMLYIWKLSDSPICIHCGNEQEDTLHLFWECPRVSQFWRDVKKWHERVSSE
PLHIDLASVILGDLTVNSPRLNNTLILMAKFFIYKQQEPERTNWQFTTVNGEKYFTSFLKPLYFLFVFCYSCGFALFNYF
H
>Tx1-17_BF_gag#LINE/L1-Tx1 2-508  [Branchiostoma floridae]
KFEKEKVTAQQKQVQLEAYSRRENLLFYNILEENNEKPKETERLLTQVLIHSLKLPEDMVKGIKFQRVHRLGPVKIGENV
RPRPIIAKFVWYKERERVRLAAKNLKDSMIGLSEDFPRQIREVRRKLLPVLRAARKAQPPKYAIMNVDQLYIDGVLYKGP
EAKRPYVT
>Tx1-11_BF_pol#LINE/L1-Tx1 2087-5890  [Branchiostoma floridae]
MTQPKVEICSYNCNGLGDRRKRNEVFTWLKDKSYKMYCLQETHSTQAVETEWRSEWGGDIFFNHGLSNSRGVMILFKANI
SYTVHQTLSDNSGRWILLDVSLESTRFCIINIYGPNSDDPSIFTNLETTLQSCIDPGSSFIAVGDFNTVLNSDMDRTGHR
FSSYHPKCLQAINSFCANLDLIDIYRHKNANERRYTWRRRFQASRIDYFLISFSLVSSVQYVKIEDSFRSDHSLIGISLI
TSPIPRGQGFWRLNQDLLSDPVFVRETSDFIKYFFLCNKGSANPHIVWDSFKCCVRGHIIKYSSWKYKQRKKAENSLVNE
ICRLQVELDSVPNSTTFDKLQEKKHDLEILYQIKSNNMIASRRAKWMEQGEKFFMNLVTRDKARKNMFRFVTTDGQVKTN
PLHVLEEQANFYQNLYSFEEPPMSVDDDVFEPFFPTSNRVSLSPEQRGGCEGLITEGELKDAINSFPWGKGPGLDGLSVE
FYKVFFNCLKQPMLECFNFSFSEKQLTGTQKEGLISLLLKQDPSGQDKDPSYIKNWRPITLLNCDTRVLSKCLALRIKNV
ISNLISYDQTGFLQGRCISDNIRRILEIMEYYEKNKLPGLIFLADFEKAFDTIRVEFIVKALRYFGFGDSFITWIKILYS
DISSKIINYGYISKPFNLSRGVRQGCPLSPYLFILGVELLASKIRNNIEIKGLDTFGITSQLSLYADDSSFPLAPELGSL
YALVKDLEIFNLLSGLRSNFDKCRILRIGSLSGTNFYLPCSFPILWTDGPVDILGIHIPRHMSDIVHSNFDRKFEKIDKI
LMLWKSKSLTLMGKIILVNTLIVPQFIFLLTSLPTPPSDFFDRYEKKIFKFLWGDGPERVKRKTLYAVLDQGGLKLRNLR
AVDFTLKASWLPKLYLNKEWFCSKLILLSNSIFRTDLFPFAQLNKKDFESLLGKISPLSTFFTHVIQAWLKYQLRPPEEA
VEVKQQLLHLNSNITISGKPFFSQVFLSRGVIFVNDMLDAENSFLSYVDFVTKFGVVCPEFKYNQLMSAIPPFWKAKLKL
NSPSLGVCLPVCRNIGWLRNCNINKCLYQFFMNEASLWGSSERIKLSWEEYFDTPLPWQNIYSLPYKLSIDSYTRIFQYK
LLFKFLPCNKILYLWGLIDSPLCNLCNEEEETVVHLFWDCCVTSNFWRQVDEWFFNINGTHLHINALSIMFGISSDRCPV
LSNLILLLGKIFVFKNRKHSLNLSAFISFVSYFYKLEKNIAIRQGKLLKHRGKWGNLNNLFSVSTIS
>Tx1-4_FR_pol#LINE/L1-Tx1 2-3751 [Takifugu rubripes]
NEPDWRREWAGQLFLSHRSSNSGGVGVLFSRDFVPLSSSVEEPVPGRLLKITAVFENVKLVFVNVYAPTAGLDRLLLLNE
VEKVVAGCNNNEFLFLGGDFNCTENPLLDRNHPEPHLPSKSTLTKLVQARELCDVWRYFHPGQRQFTWTHSRGNQLSLAR
LDRFYFFRHHINIVKRVFISPVGLSDHSLVSCVVYIRNAKCASAYWHFNTQLLHDNVFKEAFKTLWSNFQMTKRSYSSTQ
QWWDVGKVHIKQFCLQYTLNASRDMARSMRDLEREVVELQLLAESTGKREHIQLLKXKSSALADLLGVAAQGALVRSRFQ
HIAQMDAPSHFFFGLERKNGQRRMIHSLRANNGQVLEDPIEIRQRAVTYYRDLYRXECRGESGVERFFLNGLPQVGEDSN
RELDAPLSAEELTTALHGLAGGKAPGIDGLPAEFYRAFWPVLGEDLLCVLRDSLSQGRLPLSCRRAVLTLLPKKGDLQDV
KNWRPVSLLCTDYKLLSKVLATRLRKVMERVIHEDQTYCVPSRLISDNIALIRDILDLSGSLGRELGLISLDQEKAFDRV
EHQYLWRTLQAFGFSPGFIARIQALHCGIESVLKINGGLSAPFAVRRGIRQGCSMSGMLYALSIEPLLRRLRAELSGFTI
PGCLRRYVVSAYADDIIVFINSQNDITNLCETVTRFNKLSSAKVNWAKSEALAVGERCKQLTLPGGLSWRAGGLRYLGIH
LGDEAFMAKNWEGVLEKVEGRLKRWKWLLPRMSFKGRVLVINNLVSSMLWHRLACVDPPPNLLSRIQAVMVDFFWDRLHW
IPQSVLFLPREEGGLGLVHLESRGATFRLQFVQRLLCGPSDLVWRPVAQAVLRRCGGMGLAATLFLMDLTGVRLDELPGF
YNGLFKVWKLFTQGRRAACNSIFWLLEEPVVYGARFRCEAGPQLAQKMREAGVFTLRQLVNVCGPRLDNAAALARHTGVR
SVRVLNQXLGGWRHQLAASELELVSEFCKGRKPANHDDPFPDVRLTPVLGNVPGSQPLLRNVQPVDLSSSAGKLMYNTLV
KVLNQRSLAGRVDTKWRTQLALTETQRPEWRSLYKPPLTRRGGDLQWRILHGAIAVNGFLSHINPNISAECPFCDHRETV
FHCFSECDRLSVLFLLLNQMFSLLGETFSQTVFILGFRYHRRGKAKCQLLNFFIGQAKLAIYVSRRNKIGGSLDCDLQTI
FARMVKARIKTDFNFYRATNNIEEFKSTWCLNDGLCLVEEEELVFGGLLN
>Tx1-4_CQ_pol#LINE/L1-Tx1 1572-4826  [Culex quinquefasciatus]
MAYIRKCSTVNLNAISSTLKLSLLKDYVWNNDLDFVFLQEVATENFRFLPSHNALINISSDGKGTGVLIRNSIEFSNVCM
NPNGRIISVVIDDINFINIYAHSGSKYKKERDLLFSEDLLIHLSEHKENVILGDFNCIIDKNDSNGLNKNISNGLKTLVT
SLGLIDIELKKNNTRTFTFMRCNSKSRLDRVYSSIDFLEKVRSLETVPVPFSDHHSIIIKFEINRQFMFFHGRGYWKMNS
SLLYDLDILNKFKNLYSNLKQRNSFQNLSYWWNNDVKTSIKKFFKTENFITNQQSHREKSFYYNCLKEIIEKQRANIDCS
QELALVKSKLIELEQQRLNKIKYKIKPESLQNDEKLSLYQITSFINRNTSSKQLKLRIDGRETSDYNLLRNEIFNNFSQK
FKKQPVNNDNTDEILNTLTAHLDDHEKHNLAKPIEMSELETALRFSSKRSSPGPDGISYEFYTHCFDIIKNDLLKLFNTY
YINEEYPPGLFTSGIITLIPKKGDKLDLQNKRPISMLNTDYKLFTKILWNRIQPILEKLIGPGQAACVKDSSCIHNLKLL
RNVLIKANKSKKFKGAILSLDLEKAFDRVDHEFLWKILKKFNFPDNFISCLRKLYKNATSSVLFNGFLTSPFAILSSVRQ
GCPLSMVLFILYLEPLIRLIDRNLKGVLIDNNFVKVVAFADDINIFIRDDSEFDMTLQLIHYYSVYSKIKLNSKKSQFLR
FNSCRLGPQQVKEVEEMKILGITFKKDYVETIEKNYKDLIQSIIVSLILQQSRRLNLFQKVTILNTFILSKLWYVAQIFP
PENKHICTLRSICGKFIWKGLFYKVERKELYLPVLEGGLSLIDVEAKCKALFVKNILFSRSNDVVNIDKFMLEQIHTKTI
TRNTREWLKDADLFMNETHLNTCKKXYDTILSRMKITVKKRIELPNKNWQNLFENTNKNFLTSDSKSVLFMILRDIIPCN
AKMFRHGVRGVESPNCDCCGVPDSVEHRIKNCCSSXKVWSWLNEILKTRFKLTLCDADELLSCNISETNSKEKAALWLTI
ESMCYCLQNSKSGSIEELKSHIRESRWNKRELFKKHFKHFLNLW
>Tx1-6_AMi_gag#LINE/L1-Tx1 93-1691 via tfasty with Tx1-4_AMi_gag, 2 stopcodons. [Crocodylidae]
MAVVASKHEVKKELKSGNEDLETDGEWTKVEKKGRKKVTAGAMAEAATMRVTMPEGRQEQRRAGDRAGAAGEGTSGEKQR
TAGAxRQAGPPGVARQENTEEAPREAREERRLWIKATLTGDGRQTGSTMNRYDFLEKVLFEILEVQAEHLTSLIAFSNRK
TWELTYWDGEGYENFWKKYAEKCGREELRGIKFIAGEKSRERVIIVxMYTDLLEAEDIERWMEKYIQRVMSVEKVRDKYG
IWMGSWRARVVLQADEWSPGGVLHLPSVIQIGAHRGFIMYHGQPKRCSKCRKVGHLSAHCPLTVCYRCEGMGHRAAECQE
SLKCTICKGEGHLYRRCPKAFASIVRPPEEQQNPEEESGGEEGLDTEVEMVEETPQEGETEKEGGEISVIEAAQEEIGDG
MEGKAGTANSSDMEVGVGKKEDTLQTTEVEMEQEKEPERQAGKRKKMQGLKTRKKKPDNEGGESEEEPESSFLPLTPLGS
SPEWRPEGGKRRGGGNMQAFLNAKAIQQLAKATGMRVREGEESTTPSSSTDEP
>Tx1-11_BF_gag#LINE/L1-Tx1 285-1097  [Branchiostoma floridae]
MEALLIKLDELKAENATNFTKLNGNFDEMKNDMKKMGDILCCHEEKIKSQDELIKNLQGKIESLEARQFHSEQYSRKNCL
RVWGFPDTYDQKDLPNKFVEFVKEYLQVNILPGEIDNIHYLGGKGKNRHLIVKFATFLAKRKVYEERKALKGKKNGEGSF
ISIRPDLSPASRALFHQAKQLITNGGDNNPLSAVWVTIEGRIWATRGDRRVLLTCQEDLEQGVAGDTTGEFVVQRRKTFA
KRQASRSPEQQPDVKKTNVFGPLAQEMDCP
>Tx1-9_BF_pol#LINE/L1-Tx1 655-4449  [Branchiostoma floridae]
MNTTIGSYNVNGIANPRKRREVFNWLKEKNYDIICLQETHSSPEHEMAWKQDWHGEVFFNHGTTNQRGVLILCKENLKFT
VNNCTKDDDGRLLIIDISINDLNFCICNLYAPNRDNPDFFDNIEKLISNYNHGNFIIVGDFNTVQNAKLDRAGRNPAVYH
PNAQQKINDLMFALELVDVWRYKHPNTVRFTWRRGKQASRLDYFLVSFSLLADISNVRILDRLKSDHKIISLNIQTVKHP
RGRNYWKFNQTLLTDVNFQQKTEEFIDEFFRFNIGTSDPLTVWDTFKCCFRGHTISFASKKRKEFISKENDIKKHIEQLN
EKLDETDEPSQTVLDELSSLQSELEILYEQKSDQMFYKQRADWMEFSDRCTKQFLDLGRRNSSKKNVINLKTTDGENIQD
PKRAIEEIKSFYHSLYSFSDPPKDLDDDNCEPFFPGDLHVHLDTEQKNSCEGLITEKELWEAIDSFKEGKTPGIDGIPVE
VYKTFFRNLKNPMLHLFNHAYESGNLSDSQKEGLITLLLKQDSNGEYKDPTALNNWRPLSLLCCDVRILSKVISLRIRKV
ISNLIHKDQCGFLQNRFIGENICQITEIIQLYEKEKLPGMIFIADFEKAFDKLRWDFMFRALRFFGFGESFIRWVSVLYK
DITSKVINNGYISTPFKLSRGVRQGCPLSPYLFILCVELLAVKIRSNNNIKGITLHETEIKVSQFADDSNFPLQPTLTSL
LALTKDLNNFSEISGLDPNYSKCKILRIGTLRNTHFTLPCNLPVQWTDGPVKMLGVGITGDTNKLTKNYEDRLIKIDRTL
LPWKMIPMSLYGKVTLINTLVVSQFTHLFMSLPSPEKSFFQRYEQKVFRFIWNGKPEKIKRKVIYNTYDKGGLGLIHLPT
FDRTRKASWVPRMFCQHNSNRKPLLDTSSVVFSRHLYPFLQLSLDDITSMRPLCTISPFFKDVLKAWLSLQYKPPETYKD
IQNQIIWCNSNILVESKPIALETPMSCGMIHINDILDLDGKLLSYDDVIKKFGKVIGRMGYNSIVSAIPNDWKKELLKHS
PTVGPIIPSAAHYIWLKTCRIHKKTYSFFLQKNNIAMSPTNIQSYWEDEFNVPLPWHHIFKLIYKTTISPRLRILQYKIV
HKTLATRKMLHRWKIADSPLCVHCKLEEETIRHIFWECPRVHELWTKTQKWLESIFLQKYNFDAMNVIMGEFRLDHPPIL
NMIILLAKNFIMHNNQQHLSMKQFMNIIKTHEHIEYIIAVRKQKLNYHLKKWETLRLALFPTVP
>Lian_Aa1_pol#LINE/LOA 641-4210 Previously called Lian_Aedes. Corresonds to gi|2290213|gb|AAB65093.1| Lian-Aa1 retrotransposon protein [Aedes aegypti]
MQNGAAQVALVQEPYFRRGNFYLGNLVDPVFATFSKLEMANSRSMPRACVLVNKAIVATLISELTTRDVCAVTIDVSVGD
LNRKYVYCSVYLPHDEPSPTDDFKRVVVHCVTKGLPLIVGSDANAHHIIWGSSDINLRGSSLMEYLSSTDLGLLNIGNRP
TFMVSNREEVLDITLCSNRISHELTNWHVSDEESLSDHRYIFFEHSNVTAQTLRFRNPRSTNWELYIELVATKFHGYSPS
IENPSDLDDAVDTTTSYIMEAFEEACPLRSVKTTRGTPWWNSDLTRLRKQCRRSWNRRRSAGSESFKSARKAYKKALRSA
ERSGWKNLCTNVSSLSEVSRLNKILAKSKDFQVNEIRLPNGDFTSSDEEVLECLFNTHFPGCVDIASTDEPNVFSCSYES
LASARSIVTTESIQWALNSFAPFKSPGADGIYPVLLQKGFEFIKHVLKKLLVSSFATGYIPKSWRDITVKFIPKGGRASY
EEAKSFRPISLTSFLLKCLERIIDHHIRDVYLANMPLHVNQHAYQSGKSTVTLLHKVVYDIEKAFAQKQSCLGVFLDIEG
AFDNVSFDAILEAARNHGLPTMITNWIHQMLKNRHLFSTLRQAAIRKLSVCGCPQGGVLSPLLWNLVADTLLRQLNNCGF
PTYGFADDYLALIVGMCISTLFDLMQSALQVVESWCRQYGLSVNPNKTSIVLFTERRNRDGIRPLRLFGTEINVTDQVKY
VGVILDSKLSWTPHIDFRVKKACMAFGQCRRTFGKTWGLKPKYIKWIYTTVVRPILAYGCLVWWQKGEVRTIQSKLGHLQ
RMCLMAMSGAFSTTPTAALEALFDVAPLHIYLKQEALSCSYRLWVLDLLEKNPVNRRSTHTSLFPLLVNWDKIVLAPSDL
TIACNFPYRTFTTQFPSREEWTSGYLERSISNNIVCYTDGSLLEGRAGAGVYSRELRLNQFYSLGRNCTVFQAEIFALMC
GVQSALQQRVMGKVIYFCSDSQAAIKALASANSRSKLVIACRTQIEELNSVNSVNLVWVPGHSSIAGNELADELARDGAS
HDFIGPEPAIPISKCWVKLQINSWAATQHKQYWNSLESCRQTKLYITEPSPKVAKYLTNLSKQNCSLLVRALTGHCRLNY
HMANIQRADSFVCDSCDSDYGTSYHLICNCPVFAQMRFQLLGKHLLSETEYRSLNLQDILLFLTRCGNEL
>CiLOA_gag#LINE/LOA 156-1226 via tfasty with Baggins1_Cis_gag, 3 frameshifts and 1 stopcodon. [Ciona intestinalis]
MPAASGVAAPPVLNTPLGTPATAVETEQVSDALTKKMCSLKVLKPKHNEGGASTSRVASTEDVPNPGTSEEFVDPHAKRR
AKRLRQKARIKASCDNPEASSSCNPGNNRPTTSPSGAASGKQQRKRTRAVKSSTGSASSTPGAKRRVEPVLPRKGGETSY
KEAASSALRLDVRFATGTDPMTPADIAYINNLLAKAMVDGHLPRTAAKLHECKHLWRLVIxGSSVRTWLRKVPARPGAPA
RLHSLGPQDRPKERMFIAWIPCPDLRGNYEQFLPVIGRQNPEIPIERVVSAVGNGNDYGFHLRILTALPSLRKANFQLNF
LFGLINLVGSQAKAAEEGSESPGQETNPNNQDGALKTG
>Loa-1_DEl_pol#LINE/LOA 1994-5620  [Drosophila elegans]
MAATSSTRLAQVNIHRAKAASAVLARMFTSQHLGLALVQEPWWHHGIKGLYTKDTKVICDPGGSPPRSCIVIRKDINYSI
FSEFMSRDCVAVTINGTGAAPKLAVASAYFAGEEACPPPGIPGLVDHCRTNKIPLIIGCDANAHHVIWGSTDVNNRGEQL
LEFILNNNLEICNVGARPTFVTRVREEVLDITLVTNSFKPHIRNWHVSPEESMSDHRTILFEVAFXTKRCNPKRNPRKTN
WDKFRSTLELNLSNEPSGYPRHPLELDRAVDNLGHEIVNAFEDSCPLGRQKRETDAPWWNASLERLRVTTRKLFNKPKTD
RNWELYRQSLTLYNKEIRKAKRKNYRNFCEAISNVNEGARLHKAMAKSATDSNLALRKGNNTFTSTDREKLELLFDTHFP
GSTPTTGNVRRDQHRTPRTVASDWAAAKSIVTPEKLKWAIGTFQPFKSPGLDMISPAFLQQGQELLLTRLRRLMVSSLAL
GYIPSAWCSARVVFIPKIGKKDITSPKSFRPISLTSFCLKTLEKLVDYNIRRTALRDCPLQNTQHAYRAGRSTDTALYQL
CRTLEGAIDSKEIAICAFLDIEGAFDNTSHDAVRAALSRRNIDVTTSKWIGNLLESRQATCTLGSDRVTIATSRGCPQGG
VLSPLLWSLLVDELLSKLAGKGIQCQGYADDIVIIARGKFEATLCDIVQLGLKTTLDWCREVGLNLNPAKTVIVPFTRKY
KLQRMRQISLLGTPIETSREVKYLGITLDSKLNFASHVQKTLEKCYRALYTCRKIAGKSWGTRPQIIRWLYLMIVRPILT
YGALAWGKRAKLTSMQNQLGKLQRLACVCMTGAMRTCPTTALEILMELTPLHCVIEIQRKATLLRISTEGTGSGCILNNR
DATNLLGEVPLILHPRDEMTAELIFEQNFTAHLGNKKDWTTLSEVHPMAKHTIAWYTDGSLTQQGTGLGVVGPRIKYHES
LGQYTSIFQAEVCAIGRCAELNIQRGYKEKDISILSDSRAAITALHSNKITSKLVLEVKSKLNILGSRNRLALRWIPGHK
DISGNELADKMAKLGAEQPLIGPEPYCGIGRHTIKEYLRKEEGAMRQEHWRNTPGLRQAKTQINNYNKKRFKELIQLGKN
SLRIVTGLLTGHCRLKSHLGKMGITSSRTCRFCDIEDETSKHIIADCPALASIRCKILGTRTLTPELLGRINPLKLLDFI
RGSGLISEL
>LOA-3_CQ_gag#LINE/LOA 1-891 Fragment [Culex quinquefasciatus]
IYIESQNDGINTNNWRVIERKIIYEKHVEWLFTVDEASMNHFKDHDFLINYKFGQTTLRRKLPNKENTNENAEXMGNPND
NQRRNDQETAKTPENQGEVCVSGPSGIQKPLVNGKSSNYDHQHQKRSGSFANQNNSQLSNGNMASKYSTQYKKRSGSFVN
QNYKQKYNTNKHSNNYPKXQNCSGSSANQDNKQPRSENKRAGTYMNPHGFWKSTTPIDHDQKATGQPRHKKYPQAMLDRK
ADGELRARNLSRPQKSLDRPEIPSGSGATLDQSLSPPSNITRSSGPSKDRKKDLKQ
>LOA-1B_DPer_pol#LINE/LOA 1747-5376  [Drosophila persimilis]
MTRTRTSRWWRILKMVLRILQINLHHCKAASAALILRLDASGADVVLIQEPWVVGGKVCGLGTREYKIIVSQNEGKIRTC
ILARKHLNIFLLHNYSDGDNTAASLELRGHHLRLVASYMAHEEDDPPNDLVRKIASDSERTDKDLLIGCDANAHHTQWGS
TDTNVRGESLFSFILNSNLFICNRGNDPTFIIKNRQEVIDLTLVSSKLLDTIKSWRVLGDHSFSDHRYIETILSFDIPKP
TDYINPRKANWEKYSTTLEELLPPNAPNCPNTEDNLNRLVYRFTDACNKAFKAACPSTRPRGKKKPPWWSKQLDTLRRTC
RTLFNRATRTKEDTHWADYKTSLALYKKETRKAKRASWQKFCSEIEETSEAARLRKVLSKTTPSVGYLKKNDGTWTNSSE
ESLHILLDTHFPGCTSTEPSHLPREGSVESMDHILTKRNISWAVNSFNPFKSPGPDQVIPAQLQRAGETAINWLHSIFRK
ILAVCTIPQAWLKARIVFIPKAGKASHSTPKDFRPISLSSFLLKTFERLIGLQLRTTISPQLYSSAQHAYRKGKSTETAL
HEVISSVEKSLHLKEYSLIAFLDIEGAFNNVTPGAITEALTDLGVDRHLVMLIDQLLIRRTVTSSMGSSTQSRYVNRGTP
QGGVLSPLLWNIAVNKILCDLEEGGCKVVAYADDVAIIFAGKYPQTLCDLMTAKLARLSQWTESRGLGLNPSKTELVLFT
KKYKVPPLNPPTLNGYRLSFSDSASYLGLVIDKKLSWNLNVKDRVRKATTALYTCKKAIGLKWGMNPSIVRWIYLAIVRP
IILYGVTVWWPALAKRTITNQLGKVQRTAALCISGALRTTPNDALNAMLCLQSLDFAGKERAEMAAIRLRDSEQWVPQNI
GHSSILNKNNKVPARTDYQVPMEHTETPFSIIIPHRDDWLEGPPGPDGAISIFTDGSKLDGRVGGGIYSEQLNIRQSFRL
PDHCSVFQAEVTAIREALYCLHTVTTTATNLNIYSDSQAAIRSLNAISSNSATVAKCRRSLHEMAQQFAISLIWVPGHRD
IEGNCIADELARSGTTTPLLQDKEDICMPMATCKLIIKEQYTLLIDNKWQTGPRCRTARQTWPTIDKKRTSELCKLGRER
CSAVIRSLTGHWLVGTHANRLGAPYNDFCRSCRDEDEEETVEHLFCSCPALSRRRLHHLGSAFLNDISEMSTLCPRKIVN
FIRASGWDNC
>Baggins-2_NVi_pol#LINE/LOA 1-3611 via tfasty with Baggins1_pol, 1 frameshift. [Nasonia vitripennis]
TQINLHHSKGASAALVRRMAKMHTGICLIQEPWLVAGRSGVWVGAGRIFRDPTCSVPRACILVKGFDALLLPARCSRDLT
AIKIRLPVGEGSEREVVVASGYFPYDSQEEPPPREVQDLVEYCRQRSIPLILGCDANAHHIVWGSSDTNGRGDALLQYLV
TTSLCIMNRGREPTFYNSVRSEVIDLTLCTVGMEGWVGSWRVSNEPSLSDHRYIQFEWKERCSETRAFRNPRKTDWAFFR
ENLRNELQSFKPSFGTTDELDHWAFELGEIVNISFQRSCPWTIPRGTWGTPWWNRELEDLRRETRRTLNRAKNTRNSIDW
RIHREAQRLYKNRINAVRIKGWRDYCEDIERYPDAARLLRILAKNPEVWLEAIRLPTGEYATSEEECLKLLLEANFPGFR
LSHEMGDESSGRNRQQRAAWDLAAKVVTPEKVKWAIRNFQPFKAPGIDGIYPAFLQEGLEELVGPLVKLFRASVALAHVP
EIWKTAKVVFIPKTGKPSHTTVKDYRPISLNSFVFKTLERLVDRFIQDDILTVFPLHPNQHAYRAGFSTETALHSAVWRI
EEQLERGEVMVGVFLDIEGAFNCTSIEAVVKEAGLHGMPGPLIKWLQGMLTRRTVISSLGTVTVSGEVSKGCAQGGVVSP
TIWCLVANGPLEALNGWGCYAQAYADDFLILIKGSEIGAAMDAMQLALRKVERWCCSTGLSVNPDKVEMVIFSRKYKLDA
YRAPKLSGVALQVKDSAKYLGIVLDKKSTWEKHLTAQCDKFLVALWTCRRAFGSTWGLSPRIILWLYRAVLVPRLAYAAL
VWWPRAELAGARAAPEKLRGQVLRGATGAYRTTPTKALGILVKVEPLHLTIIGMAAKAAHRLNAYGQWTQGTRHTRLPGG
VGLLPEFSIKTDMMIPRYFFGRRYGVVIPTREEWKARRDSLPGTGDVWYTDGSRAETGTGSGYYCRRDGRGTFFSLGRYA
TVFQTEIYAILTCAQRNIELGARDRIITICSDSQAALRALMAHRTTSRLVWECKVVVNQLTAHNNKVRLLWVPGHTGIRG
NEIADRLAALGAKHPPIGPEPYTGAARCLLAGEIRDWVEREHTKEWQGTQGCRQAKAVMGQDTNVGWTKCIAGGSRNNSR
LLTQIVTGHIRLRYHGLKMGKEATGVCRWCEGAEETPTHVLTVCPKFAQLRHQCLGELFPTYEEIRALDAGAILTFWRRA
GLPA
>L2B-1_HM_pol#LINE/L2 1338-4280  [Hydra magnipapillata]
QSIVVKDIKIAYTNINGLINKLDRVTLYVQKFKPHILGLTETHITSLIFEKELEIFGYSFINLESSSAHTGGCILYYKNG
IKVNSDPKSIVKDKCHWLLSTELVINKIKFHFSVLYKSLQENKTIFLEFFDTWITTIRSKNIIILGDFNINTLSNDKHSI
ALKQSIKNNQMYIFNSTPTKISEKSSTCIDLAISNCTLIETNEKEKLSDHEMITCKYSIKEKRQFKTKKAKNIVVNSSKQ
NFHKIDYSLLNKNISVELKNIKKEIDIEVMANSYTTIIKNNINMQEKFYKTNKEINNNNPSILNNWLRNSKYTDIVKEYN
QEWKTFVWFKYHGFSESKCKIQYNKFKKIRNKKTSLLRKLKADYYKIKIDSVKNDPKAMWNSLKYLTSVKPVIKSNIMDD
IKFDEENVIRSFQRDDTKKSIPDKYNEFLIQSIIDIETSIQSDMSYNAMENLSLNDNIPCFCEFTPLTMQDLNDIVNQLQ
NKNSMCEGLNVIIFKELYSSFSSILLKIINLSLKNGKVPSKWKKSTIIPIPKLMSPKLPQDLRPINMLPTYEKILEIAVH
KQLSSYFESNNIFYNNQFGFRKNRSTESAIQLLLSKWRTSLNNNKFVVTVMLDLKRAFETVNRKILIQKLQGYKIKGTVL
NWIADYLSMRTQVVKIKGEESGELVCDIGVPQGSVLGPLLFIIYMNDIASKIEYSFVNLFADDTLVCIEGTNLEETFFKL
NQDLKILCKWLSNNKLKLNTLKSMAMLIVNSKKRKNSLINHNNNIKVILDDVVIEFSDSVKYLGIIIDYQLNFTEHIKYI
SNKIAKKTGYLGRISKYLTYWTKKIIFQTIIAPHYEYCASIFLDVNTNNLNILEKLQNKAMRIILKCHWLTHKTEMLNLL
GWISVKNRIIFKSLCFIHNVTSTVNDIFKPFYSKNSELHQHYTRQASYFHKSSQCNRAGQKLLFVFGLKLYQEIAGGFVQ
LDYKKFKKKLLQTLKNNQLIQ
>L2B-1_CP_gag#LINE/L2 260-1600 [Culex pipiens]
MSEEMDTGGRNEGETTVLAHPCGQCAAPIANGDEKVDCFGKCRLSMHTRCLPRATAVGIKMLSQMPNAVFVCDACLASHK
FDDGNTEKILQVIDAKFNNLAGVIDFVKNFDSAVKKIVREELVRANGKKTVVAEKTEESRKIFTRSAAKAAASANKRKAE
EEVEETGASFSTPKTSFAEVVRKRVKISEEEVKKKQSKKPDPVVVIRPKEGVQVEDVRAEVQKKVNAKDLNVHRVTSSRS
GAVIVSLKDEASVAVLQANVEKQLGGRFEAQLRESFKPSIKIIGMSDEMDEDELRDSLVEQNDVFANLKHFKLRKTFHIE
KWRFNNIGVFVELDAETFFKVLDLGKVNCGWNRCRVFDGLQVTRCFKCNGYGHKGADCRSEKQICPICSEDHKWEECKAT
AEKCVNCEKLRVQRKVNVDANHSAWSSDCPVFQKEQEKRNRLVDFTT
>L2B-5_CQ#LINE/L2 1-905 via tfasty with CR1-1_AG_gag, 1 frameshift. [Culex quinquefasciatus]
SRKRKLEAENQNGSNGDETPKSIPSFAEVLNSKRAKKDDNVKTVPAERLKVKPNPVVVIQPRKGVDIGEKTAKKELKQKV
NPKNLNVNRVIEGKDGAVIVVVKDDESSQKLKESVEKEMGDQFEVNVRDSMKPTVKIINISEEFNEDELKATLIEDNDVF
HDLKHFKLRKFYRNEKRSYAQFTALVELDATTFFKVMELEKIFVGWDRCRVFDGLEVPRCFKCCKYNHKIAECKAEVDTC
PKCSGNHRGKDCKSTVEKCANCERDRVEGNLDVETDHAVWSTNCPVYQRFIKRLNKRIDYTA
>CR1-12_HM_pol#LINE/L2-Hydra 461-3506 via tfasty with CR1-43_HM_pol, 1 frameshift.  [Hydra magnipapillata]
MEGNIESKTFENISFCAYNCQSFKSNSIYISELVKSFDIIFLSEHWLLNIELFVLKNIALPTHKVFFHAAEKKAFGRPFG
GNAFIIKKDVLLSPHIIYEDDNILAIKGKNKCHNLVFIGIYLTSCRNNEESLSKYEQQLNLITSIVKNYEDVSECIIAGD
FQSYPETLYDSEIRNNKKRNKFSNHLTNFIKSNKLSFIDIISGAGPTYTYQHKTLSNSSYIDHIAALKESSLSFINTSVI
PPSPFNFSDHLPIATNIVVTHTNLSTVINSIMHKYNYIPKYAWNNEKFINIYNHNLSVAFNYYTFNEEEIEQELKQTCEK
IQNAALLAVKQCFKQQICKYSKSWWTTDLKKCKENLSFNYKQWQKSNYNKTQECIEYKRYIFSRKNFRKAVKAAHNKKIH
EKTINIENLRTTNPQRFWDNIRKIKTKATTRLFTINKSQNIKDIVQEFRQHFQTLLNTPLITNNNHNPSQIPPLSKEPNS
LIITSADIINCISQLNSNKSPDSCGLSAEHLKNSHNNNLLLWLAKFYNSILSNGKVPNDLSTSTIIPLVKSYKKSLNNPD
NYRGISILPIFTKLLEYLILLICPSITDSHSHQFGFKKNSSTLHAEFLLSETVKHYKNNNTPLYMCSLDANKAFDTCNWD
LLFEKLYFQKKLPLSVVHTISSLYHSGTANVSYQGVTSNQFSLSQGVRQGSILSPHLYNIYTESILNEIVSECKVGSTIN
GIYTGVIAYADDVILLSPTISGLQELINRFQTYGVANFIKLNTEKTEFLISGKSYIPNNVIKINGVSIYLQNKLKHLGFQ
WDNDTSKNKIATLQKTNLNERITQFQSVAKALIDSGIRYCQPSTIVHLYNTLTVPKLIYGLELCKYDTNFLSKIDAVGRA
VLKSFFCISKYSKNYLHSFFKIEDISTILLRNKVNLFIRLLKNQTCYSLIINQIQETQNKKSFTNEAFDACNTLDLNFIQ
CMLNGKKIKLTQPVVELQTNVMLILKETFQFWNLKEKREAFKILMEENVPRTLSQ
>LINE2_NT1_pol#LINE/L2 1-661 [Natrix tessellata]
DLSAAFDTIDHGILLHRLEGMGVGGTVLRWFGSYLSDRTQCVLTGGQRSTLRPLTCGVPQGSVLSPLLFNXYVKPLGEII
RGFGVKYHLYADDTQLYISTPNHPNEAVEVMSRCLEAVGVWMGDNRLKLNPSKTEWLWLPAPRFSQLTPSLAIGGEQXPP
VERARNLGVLLDARLSMDDHVASRGKGAFHQVRLVRQLRPLLDRDALRTVTHALVTXRLD
>LOA_Ele7_gag#LINE/LOA 318-1970 [Aedes aegypti]
MSDIGEKQLMEIDVEDVLXSSSVDDVPSCSSSILDNPVGDDGYEDDGDFEDGINVTILSSTANIVHDTSAVDKTVLGSSA
GKQPVLPGDQQRTKLNGAARKRYKRLVAEGIDPEEAYTLSRVPLQTPNSEKRSRNADLSGSTSSGENPRKKQNVRPLLEP
RTGSNHQSLGKFSVQGRLQINSNVCSGRNETIQSQNKASYSEVVNYVRVGIVPKDYPNVELTSAQLLATRKAILSKVAQQ
RKEKIKPKFGQCLLRTGHLILVCKNQETAGWLKSIASTISVVEDVELTALDEKKIPRPEIIIGFFPVSAEDSTDDILELL
ESQNEGLNTDEWRIKERNIINQLHVELIFTVDGASLDAIKKCEFTLDYKFGTAPLRRKIPPKIKMPNQGVNNDLVSPSDN
LNNRRVLEEQQTTLIGSGVIRQTATPIENLKTTGDSSSASNREIQNMPGPSGIRDASFKGARPKQILEGTSSGLVRKNDT
APQSPGSNGTMESKRNVKKTKILPVKDKNPLHKNKYIAKYMKNLGDRVTNTEGGKPPRESDTTMKHENGQH
>Penelope-4_ADi#LINE/Penelope 9-2393  [Acropora digitifera]
MTPGFKPFTILRSLGRQSERLANNYISYASNVRRIRQQLWFNHRCKDLRLVPSGLRLKSPLNTQEAIQIVKATCRRLIRA
RINDCHRRLNHYNNRLQQRLDKLKQLIPTNLLDVIRDIADQRAKKTTEQYRIKTELKLTRLQRTKNKKRHKTDENWVRNI
SSRPLDKTETQVLSYGLKHSVTPKRIPTETIVSSVEAVLSRQRDLSEPTKDNIRSRIASTIQSASLTDNNLTKDERQALK
RLRNDNDILILPADKGRVTVVMDKTDYHDKMDELVNDKQTYEVLKRDPTPALQRKLNSKLLQLKKADAIDIRRYNRLRCP
VPQPAKLYGLPKLHKPNVPMRPIVSFCGSPTYELSKYLTTILKPLTDESRHKLQSTETFIDAIKTAQVPDDHKLVSFDVK
SLFTSIPLQLALDCTETAINNSTLQLPLLTNDLMDLLNLCLTSTYFQYNGQHYKQLHGTAMGSPVSVVVAEIVMQNIEEQ
ALASYKRTIPLWLRYVDDTFTTLHKDEIDDFHEHLNRQNAHIQFTKEIEDNGKIPFLDCLVIRDNNRLQTTVYRKPTHTD
RLLDESSYNPSSHKATTIRTLTRRALLVCNSHDSLADERKYLDNVFSKNNYNCDFVTRNTYRTEPNETNTNLTPTTTVTI
PYIKGTSEIIARILQPYNIRVAHRPITTLRKLLTNVKDKDQPRDRQGAVYKIKCCDCQATYIGETGRNLNTRLTEHRRAT
RNGDINNNIAEHHLQTNHRIDWDSATCVTYNTNYYQRIVLESWFTNLEQTPINRCLQLPAPYKRLIDDINRQTTH
>Penelope-3_HM_pol#LINE/Penelope 3-2153  [Hydra magnipapillata]
LSTLLKSSTKMEKINLKYSIKNIPIPSEKEYKLKLLNKTEMLVKKMRWKAFFFINNYPRNDSNYTDYGIKSSKCPPQINE
MRSFEKDLINLVKSIKFCNVNCKFQNNMQKDLKSIRTSHKTLIKADKTSNLYKLSKDEYNKLLTNAITSTYKKSMPELKD
QIIKEGKNLLIHHEVYNNIEINGSSGCFFTLKDHKDNFINNPSVRLLNPSKNEVGRISKVILSKIIHELKNKLQLNQWQS
THFVIDWFKKIKNKHLCKFLIFDINDFYPSISENILTNAISFAEQHVIIKNDDKKIIYHARKSLIFNNDEAWIKKRGGLF
DVTMGAFDGAEVCELVGIFMLFQLSQHYDKNNFGLYRDDGLAIFENKSGQQMEKIKKHFTHIFKSNNLLISIQCNIKIVN
FLDVTLNLIDSSYQPYCKPNNQLMYVHSESNHPPNIIKEIPRTIELRLSNMAVNETVFNNSIIPYEEALRKSGYNSKLTY
QPQINKNQKRHRKRKIIWYNPPFSKNVETKIGNRFLALIDQHFPVGHRLHKIFNRNYIKVSYSCMPNVKSLINTHNNKIL
HSDKNKTSKKCNCIDKNICPLNNQCLFSNIVYQATVSSGDPQCKDKVYFGISETTFKLRYANHLKSFNAPKYKNDTELSK
EIWELKSKHINPVITWKIIAQCKPYNQASKVCNLCLREKFHILSYKGENLLNKRYEIISKCRHSKKFLLSLFDTGD
>Penelope-5_HM_pol#LINE/Penelope 4-2015 via tfasty with Penelope-1_NV_pol, 1 frameshift.  [Hydra magnipapillata]
FFINDDQNSKNNFYYNNYGIKTPNYPKQITEMCAFESELIELIKNIKFRKVYSKFQKKLKEDISNIRNCNLTYTFADKTS
NLYNLSKQDYNHLLTNAVTSTYKKSDPKVKNDINKEGKRILQNHEIFNKIDINTSSNCFITLKDHKENFANNPTVRLLNP
AKNEIGRISKVILSNINSELVKRLHLNQWKKTQDVICWFKSISDPNLYKFLIFDIVDFYPSISEKLLKNAISFAEQRLII
DPEQKSIIYHARKSLLFDSDQVWIKKSSGLFDVSMGAFDGAEVCELVGIFLLFQITQFYNKNDFGLYRDDGLAIFKNISG
PHMEKIKKHVVKIFKSNGNDLLISTQCNIKIVNYLDITLNLNDHTYQPYSKPGNSLNYIHAESNHPSSILKQLPHSIELR
LSANSSSEEIFQKSTPMYNEALKKSGFNYNLSYQPNLILSHTKNRKRNIIWFNPPFSKNVSTNIGKIFLTLIDKHFPKNH
KLHKIFNRNTLKVSYSCMPNMKSVLNAHNRHVINNKKESAENNCNCIDKNTCPLSNQCLTKNIVYQANVCSNNLVQTPIN
KFYIGISETSFKIRYANHIKSFKIPKYKNDTELSKEVWRLKDENLNPVVRWKIIKQCDAYNPVTKRCNLCLNEKYEILFF
KHPNLLNKKSEILSKCRHKNKFLLAQFDTGD
>Penelope-9_XT_pol#LINE/Penelope 907-3240 [Xenopus (Silurana) tropicalis]
TFFRGNHKIKERRRRPTRRGGHKRKGETTKGEENIVFNLSRHILTPGETSLLCKGLSFVPSTIPNTFDTLVDIYKFQRKL
RLKEHFRNTPRDIQPPFRAKSHFEPPNTPAAVRTFGKVLNLEAKATAKMARSYPNLSIAERQAIKTLQEDTNLVIRPADK
GGSIVLLDYGYYRDELLGQLRDSTTYKLLPGDPTSKFKRELDSLISSALNAGWIDLDTAQYMNTEYPRIPIIYTLPKIHK
SLSAPPGRPIISAVGSLYQSVATYIDSFLQPLVKSMQSYTRDSTHVIQRLRDLSDIPDNSLLVTMDVKSLYTVIPHDQGI
WATRKALLHNPPINPPIEFLLQLLELTLTRNYFRFESSFYLQVSGTAMGSALAPSYANLYMHYFEEAYILPLLGKSILSY
FRYIDDLFLIWKGDLDSLLQFHMELNALDSPIKLTLNYHEDNVDFLDLNIYKTESGLGTRLFRKSTDRNSILHAKSHHPP
ATIRGIPYSQFLRVIKNNSSPNTAKIQLDEMYHRFLERGYTDTQLQPQMQRALLHTQDELISQRKPEVSQTPPLIFTTTY
NATSSSLSKSIRRNWPMINQDETLSLHLSDQPMLGYRRGSSLRDRLVKTDFKGPPKTXMDWLSKQKKLGCYKCPDCTTCR
CLLTGPNFPHPLTGKRLRINHRLTCTSTYVIYIITCPCGMYYVGKTITTLRDRIANHRSAVSRALKDGKADQPVARHFLN
MKHPLPTFRCMAIDFQPPLSRGGNRELALLQRESRWIHKLDCVSPKGLNETLPLGCFI
>Penelope-8_XT_pol#LINE/Penelope 960-3836 [Xenopus (Silurana) tropicalis]
MGCTSEVWTPTEENEEMGREFVPKSRGKRSGKKTKLRELKEFVKNINPENLYRYGIYNLSGVCLTLGQISLLNKGLNFSP
RSSVDRFNFFVDFGLFIRRLSIKRFFNINNSRKLQVPQRGESVLKEGIRCELLSRELSGLIDMHSLLSESLPIEGLKVST
NVRGTSKFYPCETKGPYISLFEKLVSRELLESKDLFWKDNLTTLEREAMRSIQNNSEIIIRPADKGGGVVIQDIEDYLGE
AYRLLRDSSTYRKLEKDPTKEFQVELFVILRKAFCNNIIQQKEFDFLWIKNPKLAVFYHLPKIHKKLLNPEGRPIIAGID
SLTSKLSLFIDLFLQPVVPCIPSYLKDSGAVMEILNGITWESGYVLVTADISALYTSIEHSRGVEGVIRILEKFNFPERK
QREFLRESMLFILRHNYFKFGKEFFLQIRGTAMGTRFAPSYANLYLGDWEDRFIWGPNRSPALKVYRRYIDDLLLIWDTK
IASLDDFFMTLNDNDDGLKFSFKCSDISIEFLDLEIFVQDGKLCTKTFFKEVDRNTYILNSSHHKDTWLKNIPRSQFTRI
RRNCTNDYDFMEQSIFLFKRFVEKMYDKEHLIREFVKVAGDNFSVFLPRLGEVFRADQIGIISSVEMVDLQIKNNLDLFL
ENGDDSVVYDRYQPMTKGNKVRYPKSNHKKVWREMRSGIRSQEKEVKNKRKKFFINKIDSVDVIQTTVNEPSNEYGELAL
VVQYHYKLSEILSILEKYWPILLHDPFLKNNLPKHLPVIYKKNKTLRDILAPTVLKQHRKNFMLERESILNYFPSTSNIK
KDRPNNMTSRGWHICGNCSQCNYCPKKVSSINYYNSEKKYLIKGHISCWSQYVIYIVECSCNRKYVGRTIRSFRTRLYEH
IRKIRLGSTEIPLYKHFKDIHASDVRHLKAWAIEHVEVDYRGGDRLTTLDKRESFWMFSLNTFEPIGFNENWNIKSFLS
>Penelope-1_CQ_pol#LINE/Penelope 1-1295 via tfasty with Penelope_pol, 1 frameshift. Fragment. [Culex quinquefasciatus]
VQHDIIYSWAEIAPHTQICLDLFLEIVAFLMDASYFVFRNQHYLQIQGTAMGNPASPVFADLTMETLIDNVLHTISCPIT
TVHKYVDDLFLVIPEDKIEEVLATFNAYHDSIQFTYEVERDGRLPYLDMTLVRQADGTIRTEWYTKEIASGRLLNFLSIH
PLPQKINIATNFINRVYNLTFVGGDKDKENEQIVHKYLSLNDYPRSLINRCLNRKNNPNPQNRPNHPNSEELQRYRSIPY
IPTLTPRIAKLLQQDYPNIVVAPRSTHTVNNLYTRIKDPIPMLNRHNVIYCIKCDQCECRYIGMTSNLLKNRLSGHRSDV
NKLDQLIQSGHTYTDVEVQAHKEKTALVSHCIDTGHRFDTTQAKILDQSFKRSSLPLLEMIWIHNTADTVNKRTDTDGLN
STYAGILHVLHKHKTKTKPQKHTTQSQLNQST
>Bridge2_FR_pol#LINE/Penelope 1-1395 [Takifugu rubripes]
TQTTSRRDMVSYDVTSLFTCIPTASAIDTIHKHLLLDKNLPERTTLTPAQICTMLDLCLNTTYFQYREGFYRQKHGCAMG
SPVSPIVANLYMEKVEXQALTSFTGTAPSHWFRYVDDTWVKIRTQELEAFSNHLNKTDEHVKFTREDVKGNSLAFLDCAV
KITEDRNLTIEVYRKPTHTDQYLQFDSHHPLEHKLGVIRTLQHRAREIPTTSQGRKKEQDHIKTALKTCGYPDWAFTKTS
RKRDPSKGEEERNKRRSVSIPYLSGVSEKFRRILQKHDIPVQFKPSNTLRQRLVHPKDKTPRXKQSNVVYAVQCQEECKE
LYIGETKQPLHRRMAQHRRATSSGQDSAVHLHLKESGHSFEDSQVRVLAREDRWFERGVKEAIHVKLEKPSLNRGGGLRH
FLSPTYNAVLHSFQQQTKRSHHSRRPGDSPPCXPADKGETPQXKLGERPDQRPCQRLSGDHPDH
>Bridge1_TN_pol#LINE/Penelope 1-2048 [Tetraodon nigroviridis]
LTKTEKDLLSRGLNSAVTPEELPVVDLITATETAIRNNKLPETEAEQIRLKVSAALANAKAPASNITAQEKRALASLAKD
KDITILPADKGRCTVVLNTTDYDSKILSLLGDSNTYEKLKRDPTSTYKKKVIDLLQKLEKEQAIDKPQYYRLYPGEATPC
FYGLPKIHKEGTPLRPIVSSINSVTYNISKFLASILAPMVGNTPHHIKNSQDFAEKVSNLQLESGETMVSFDVTSLFTCI
PTSEATEAIHKRLLLDKNLQERTTLSPAQICTMLDLCLNTTYFQFRESFYRQKHGCAMGSPVSPIVANLYMEEVEKRALL
SFTGAAPSRWFRYVDDTWVKIQTKEVEKFTTHLNQTDTFVKFTREDVKGDSLAFLDCEIRIEEDRNLSIEIYRKPTHTDQ
YLLFDSHHPLEHKLGVIKTLQHRATKVPTTSHGRKKEQDHLTTALKTCGYPDWAFTKTRKKRDPSNEEEKDKRHSVSIPY
MAGVSEKFRRILQKHNIPVQFKPSNTLRQKLVHPKDKTPRHKQSNVVYAVQCQQECRDLYIGETKQPLHKRMAQHRRATT
SGQDSAVHLHLKESGHSFEDNQVRVLAREDRWFERGVKEAIHVKMEKPSLNRGGGLRHHLSPTYNAVLHSFHKQKPKHTH
SFTRAGVTSPGDPAVKRKTSQTETRSTTLPTTLPTTPETSIQTTGILMQRLSVDISMPMVQKGYIFKLCTEPDQN
>Nematis_Cr_pol#LINE/Penelope 210-2309 [Caenorhabditis remanei]
MLLSKGPKFAPSGKFNQKVLSRISMGFVSLAATLRTRAASRSQNGITWDTLPPIPFPPAHFFLHPKSDKTDQQVAAAFNI
FMKKINEQKCLHIADNMSKKMWSALKELGQNKDINITVSDKRGEFVITTNAFYRESTILHLTDTSVYTKITKTEYNEEVK
KFYGGIESVLKSWNKKTADRLTDCHPSKNTLYILYKTHKFEERGEKATPSNTKVRPIISGVGGPTDRPSWVVCTIISQFL
QFVGCHLQNTNEILKSLNDIRGKKIKTEIFYESFDVESLYTNIDNEAAYEVVITKLKQHYAQIKWYGVSFRDIKSLLKTC
LNFNAFVFNEQHYVQKRGLAMGSRLAPVLAILYMDKLESPSKSLPTLVFKRYIDDFIVVAESKEVLDSVFKLLNAQTPNI
RLTRETPSNGWLPFLNMEITVEKGIFATRWYRKKANKNLLLPIDSHHPTKQKRNIYDVTKSTAMSMSSITHRDYSMELAE
SLLRKNGYNSRPKCPRFTFSEKKQVSNSNGKLFTDLPILPIPFVSDWTTNTVRNTLAQVGIKAMIIELKSPNLRDRLMKS
RRFDNKCQRRQCRVCPFIGNGGCGKKGVIYRIDCDCGDFYIGETGRPLAERFNEHSRAAEKPGTPSYKTTIWSKHSFEKH
QGSPLSLKLSILETERNTTRRRILEGIYIKTVNPTLNTKEELSDMVADLGFGITLTRKL
>Neptune2_Ren_pol#LINE/Penelope 708-3224 [Reniera]
NPHISKASTSKHICISRSKLKKKEKYRFTKYQPNKATENKSFFREKSSQTTKHRMTNSNTIYNLSSYKLSQSQLNILNKG
LSFSPSQPFNLQDHLSFLNQYDAFSNSLRDLALTDNDRPQHTPDLSLDSVTQHLYREMKFLKGSTQPHYPPYFTTNIASV
ENFIESTKIEIDELLSKITSKQKENISKQELKAIKSLKKSNLVIKPADKNLGIVVMNSNDFVEQCLKQLTSNTYVRVETV
PEEEIKKKIQNTLVKFKNQFGASNNRLYCFLQPNQKYQTPNFYGLPKMHKELDVNGLPPLRPIVAHNNSLLSNTAKFIDH
ILQPLAQAYNDYLKNSTQLISYLETSTIPNDIILVTLDVKSLYTSIPQSECLESVRNEMFNHQDLIIFDPDLITHLLSIN
LNNNYFEFSKKVFLQVIGTAMGAAFSPTVANIYMSVLIKRFLSSTTEKPFFFKRYIDDIIMLWPKHQDLNNFFNKLNKFH
PNIKFTMSQSETTINFLDITIYKGEDFSETNKLSIKTYQKEINRYQYLHFNSNHPIHIFKGLIIGETIRYVRTNSTIIEY
KKQIKRFTERLISRGYKINFINTAIRSVNYKNRAKYLQNNNNNTTTKQRLQQPILKCTPPPNFICIKRIILEQFHEYNLS
RYSKEPLFVTLKSNTLKDILVHSKHRPSTKDLRKITEETSPIPQHNQPKRIVTLRTTGPNKCNKKRCSTCNHFNSSAIFK
STANKRQFKIEHPFTCTSSNVIYLITCLKCQKQYVGKTSKTLRERICHHRSSINNNEPRYISKHFNLPGHQLSHLKVQVI
DS
>Neptune2_Ren_gag#LINE/Penelope  388-873 [Reniera]
NHKHSISIENTPNQRKKVLILEKRIKYHKKILTNKSIPAKYKPQHLLESSEASQNEMNSLFIKEYNEIFFKHLKRVIEAD
TTVLKVKMARLQSAKSYHHQPTTVTCKTHTSAKPQQANIYASQEANSRKRKNTDSQSTN
>Crack-16_BF_pol#LINE/L2 1-2928  [Branchiostoma floridae]
DIQTNPGPDLHLPSKGLHVGHVNINSLRNKVQELSQLLDVNKLHILAISETHLDSSVLDGALNVGEYSVLRKDRNNRGCG
VAMYIHNNIPHKRRSDLETSDTEIIWAEVHLPYVKPILVGCLYRPPSAKLEYLHKIVQILDGVTEADREVLLLGDFNINW
LSKYCPLKERLETELSTLNLKQMVKEVTRISRTINCPVSSSCIDLIFSNRPDKFLSTKSTPLGCTDHNLVHTTRKTKLPK
GQSTILLKRTFKRFDQEQFLQDIADTTWDTVYENDNVEGALDNFMTLFTTVADKHAPVCKRTVRASSAQWVDEDLRVLMD
ERDRAKAEANATGTLSDFNRYKRLRNDVVRENRKKKKTFFKDQIETHSKDRNTKQLWTVINGMMGKTSGKSPSFIESKGQ
IITKPRDIAEHFNDYFIDKVNGLTLDKDINKQEAVAPIENIMSSKNCSFTFQAATVNQVKNILKSLPPGKATGHDHIDNT
LLKLSAEYIAGPVCYIINSSLRQGVFPAQWKKAKVIPLIKNRSAPLNGPNSRPISLLPVISKVMEKVCQKQIQSYLISND
IISQKQHAYKQHHSTASALVQMTDHWLGEIDKGNLVGAVLLDFSAAFDTVNHEILLAKLKSYGFADSAVEWMESYLTNRS
QAVYINGAFSTYKETKSGVPQGSCLGPLLFCLYTNDLATITKKAELVMYADDTTPFASAPSARAVESILQSDLTRIWEWI
QINKLILNVGKTKSILLGSHHKLKHNPTLDLTVGGKKIMQVSQAELLGYTVDQHLSWNLHANKITRKMTGVTATIRKYKD
YFPEDTLKTVIQSLVLTHLDYCSGILSSTAQTQLDRLQIIQNRAARLAANTSHTTSSEVIHDRLCWPSVKERMFTTTICA
FHKIVTTKEPKCMYDNLRNINTAHHHNTRLSLRGGYVQPKPRTNSLTRTFQYRCIKTYNTLPTSITTKNQEVFKTKLREW
VKAQKDKNQPLTSWW
>Crack-15_BF_pol#LINE/L2 1-2976  [Branchiostoma floridae]
MARMCGFLVVRASCLLHSVLVCDHCVTVFVVILLLLCGDIHNNPGPARLNLPQKGLHIGHLNICSWSSKTCDLRELLDDN
GFHVFGLSETHLDPSISDQELGADGWTVLRKDRNRHGGGVAFLVRDGLPWKHRTDLEKNNTEMLWIEVRLPQTRPILLSC
IYRPPRTGMQYLNDILESVDRATDTNSEVFVMGDINIDWSNQLCPMREHLADVATSCNLSQVVKVPTRISVNKNNRRTAT
CIDLVFTNCKDRCTPARSVPVGFSDHNIVYISRKTKVPRAQARVVHKRSFRRFCPEDFLNDIELAPWHLVQDEQDVDEAL
HLFTVMFNEIADQHAPMKKQQQKSNPVAWLDEELRELMRLRDEARRESVISGLQSDIQVYKKLRNAVVKLNRKKKATYYK
EKLEENKNEPKAMWKTLNGILGKGSKRATGVVEQGGTYLTKPKDIAEHFNAFFLHKVNTLRQGMEKQPDNTVLHLIEENI
MAGKDCNFEFRQVNREEVYQLLLALPEGKAAGLDNMDNKLLRIAAEHVSTPLCYIINLSFVTSVYPSEWKKAKVVPIPKS
TTEPFCGANSRPISLLPTTSKIMERIVCKQVSDYFSKNSLMSENQHAYRKNHSTCTALLHMVDDWYHSIDQGKLVGAIFL
DFSAAFDLVDHNCLLSKLACYGFDESTTKWMASYLTGREQCVHINGTNSSFKELPCGVPQGSCLGPLLFTIYTNDLPLAI
TQATADMYADDTSAYICAPSIETISHNLQTEVNNICSWVRVNRLFLNTSKTKCIVLGSKPKMSAKPKLTLTANGKVIEQV
SEVKLLGSTVDECLTWNTHTKLTSKKMARSLGMIKRCAYLMDQTLLKIVIECLVLSHIDYCSPVWSCTTKTNINLLQRMQ
NKATRLFQSKPQWKPVHTRLLINTMTTFKRITLTNEPICISRQLRSVNNLHSYRTRFAAKQSFLLEKPRTNALMKCFMYR
AVRVWNNLPIVMQSTQSLRVFKDGLHKYFHQ
>Crack-24_BF_pol#LINE/L2 2-1600  [Branchiostoma floridae]
IPNTVSQFSPLQFVNKAVSTFAFTPITDSFVVNQLSTLKVGKATGIDSFDNKLLKLGAHILGPPLTKLFNNSLMTGHFPK
SWKQSKIVPIHKKGDKTNPGNYRPVSLLSGVSKILERAVHNQLYQYLTQNRLLTQYQSGFRKKHSCETALHSVIEEWVSS
IDKRELTGVVFCDLSRAFDTLDHNIMVRKLQQYGADDMACKWFQSYLTGRIQHTCINSVLSSAINVTCGVPQGSILGPLL
FIIYVNDLPNCMQLCKIALYADDTIIYFAARNVQAIEQAIQSDSARLSQWFAANKLSLNPTKCKTMLVGSSRANDINTEL
DITLAGTTLDQVDKFKYLGVIIDNMLKWHDHCDHLNKKLAQIIGIMKYLKHYLDREALLTIYKALFLPHIQYCSTVWDQG
GKGSLDKLQKLQTRAGRVIMGYDRHTSTSNVLRSLGWVQIVDVHKRSKATLVFKALNGMTPPHLTALFSQLSEIHTHNTR
LRSQGGLLLPKAKSEYRKKAFSYSGAVLWNSLSSQLRSARTLSQFKRLYDQD
>Crack-31_BF_pol#LINE/L2 3-2342  [Branchiostoma floridae]
KSSCKKIDTICNTFQAKQLIDEPTRVTENSSTCIDLIIATAPEKVIECGVESTGLSDHSFTYAVRKAKQPRGTPRTARVR
SYRQFNEAAFQEELYGAPWAEVEKCSNVNDALCCFHTILTNICDKYAPWITVRIRGHEPPWMTQEYLALARDRDFHFSKA
KKTKLPHVWETAKRLRNKCNNMAQYLKKQYYHNEIKAKGKDSKSLWTTLKTILPGQTRHTTTENVSKQNEENTANRFNAY
FTSIGAKLAAAFTSVYTPIFGPPRFSFKFTNISTEFTYKQLIGLPLGKSTGLDGVSSRLIRHAAPAIAGPLTYIYNLSLS
TGEVPREWKRAKVTPLFKGGDKDDCCDYRPISVLPSFMKTFEKAVHAQIYTFLNGHNILNKFQSGFRPAHSTTTTLIHVT
DTILDNMEKGLFTGAVFLDLKKAFDTVCHTILLDKLRMSGFQDTELAWFRSYLDDRKQTTVVNGVASDFMGISVGVPQGS
VLGPLLFILYINDMPDILQHGKVCLYADDTALFYAANSISDLNEALNEDLRNIDVWLHSNKLTLNVKKCKAMLFGTRNKL
RLGTDKLTVTLSGTCLEVVSSFKYLGVWFDSCLTWQDHIDKLCKGVSARLGVLRRLKPVLPKRTLEMLFNCMVLPKLDYC
DVVWGNCGKCLSDKLQKLHNRAARIVLGLSYVSHIGSDELSSLHWKTLETRRNEHLLHTVYKSVNHLLPDYLNVFHMVSE
THSYPTRHSLSQSVQLPQIHLECGRRKFSYRGVCQWNHLPMTLKTAPNIATFKHMMKLG
>Crack-30_BF_pol#LINE/L2 1-1740  [Branchiostoma floridae]
RLTGSQKSSEIPSLVNSDGKVESSPSAIARELNSFFGHAAGKLAAMIQRCTSLFHPLQFLQHSKVMFSFQPISESFVLNE
LLTMKVNKASGLDGLNCRLLRAAAPVIAPSLTSIMNLSLLTSEFPTDWKKARIVPIFKAGDRTEAGNYRPVSILPAVSKI
LERAVHIQVYQFLTENNLLSDRQSGFRRKHSTETALHLVTEEWYKAIDNGNITGAIFIDLSKAFDTIDHSILMQKLSAYG
IIGQSAKWFQSYLSGRSHCTSVNGHTSDFCTVNYGVPQGSILGPLLYLIYVNDMPNCVCKCHIALYADDTILYVSHPDLA
SVQLALQSDLDRLSNWFVANSLSINANKCKAMLIGTNKRLLNTHKLSVHINNDMLNVVPAYKYLGVTVDKELKWDMHVET
VLSKLKRALNMMRQVRPLVTKAALLTMYETIFLPHITYCSSVWDGASTVQIQRLQRMQNRVGKLILGVQSRTPTTVVHHL
LGWKDIQSIHKMHKLLVVYKSLNNMLPAHMGELFMTCRENAARATRQSSTLKLIAPRVSRECVRRSLAVAGPAVWNVIPE
DVRNSPSLRAFRHGLISNC
>Crack-7_BF_pol#LINE/L2 2-2992  [Branchiostoma floridae]
LANSDDYWYCNPCLLPCFSDSFFDSSCNDCSGDSVTANEEEISESNSMIPASKGLIMVHLNICSLYSKLDQLYVFMSTND
VDIMTVSETHLDDSIHDSELCIDGYHLYRQDRNRSGGGVAIYVSDKYSHTERTDLKQPGLEALFCQVQLPSTKPIVIGTI
YRPPTSSVEFYTLLRDSLETWSMSTPKSELFLLGDMNIDISQPCSSAVKHMDNLSQEFQLQQVIDKPTRVHQHSSSIIDH
VYCSDMHRVSDYGVVHSTISDHYAVFCTRKARRTKSVSKYVTSRKFTNFQEDSFLTDLRALNWDSVLQATRVEEAWSLFK
SLFITVSDVHAPYISKRTKTAQPKWLTPDIKSLMQVRDDTKARARRTGESKDWEDYKAKRNYVNKRVRLAKASYCQQKLE
ENLTDSKKLWATIKEVLPKKTQAVTKSLRWEGKHILDLPNIANCLNKFFVTVGNKLAEKFKHQATVPKCPARYKELKTTF
NFKQISEVGVYEKLRGLHSNKATGLDRIHARLLKVAAPSICKPLTHIFNLSLSSGHIPTDWKMARVTPLHKGGDTEDPNN
YRPISVLPVIMKAFEREVHTQFVEYLHQHNILSTQQSGFRTGHSTTTTLLDAKDYVLHNMDRGNLVGAVFLDLKKAFDTV
HHGLLLTKLSWIGIQGVEHLWFSNYLSGRQQIVSLNGCRSEYLPVTLGVPQGSILGPLLFNLFINDIPDVVTTCKICLYA
DDTAIFYPSNNVKHIESILNYELSGLATWFQTNRLTLNVTKTKWMLFGTANRLKQAQSLTVEIDQEIIERVHTFKYLGLY
LDSHLSFNEHIDKVCSKVSQRIGLLRRLRHCLTFSIADMLYKTMILPIFDYCDTVWGTCGATKQRQLQILQNRAARVVLQ
RRQRDISTVNLHQTLNWKYLADRRFEHTCIMVFKCLTGLAPTYLSATFQHNSRIHTYNTRQTTKLHPPSYTTTCGQKTFA
YTGTSQYNKLADNIRNITTLKGFKTALKNICISDLK
>Crack-1_HM_gag#LINE/L2 86-808  [Hydra magnipapillata]
MKNIEKIISSKLEEHKKSILKETERLLKDQEKSFTSIISANLKIITDRLDMLEKDINNNKCKISNIEKDLCDIKDSLNFQ
ENDISEKISQIKKYYDKEINSLYKKSIDLENRSRRNNLRIDGLQETPGESWEDCEKAVKDIFKTLLKIPSEVVVERAHRI
GQFKENKPRTLVLKLLNYQDKNKILKAVKQLKGTGLYINEDFAQETIYHRRKLWEEVKKLRSEGKYAILKYDKIFTRDFK
K
>CR1-80_HM_pol#LINE/L2 792-3849 via tfasty with CR1-73_HM_pol, 4 frameshifts and 1 stopcodon.   [Hydra magnipapillata]
MANKLNATNFFEIFNKQNTILLNNDIDPDVNFFEDVIINSNYFDIEEVSNLMNASQSLFSTLTLNIRSMSKNFENFKSML
KNINFEFMVICLIETWCKSEKNNFQIPGYKAIHQTRGGGVGGGVCIFIHESIHFxKIEILSIQNADYESLTIELLNHNKK
NVLVTALYRPPSGNKKSFQKHLKWYLKKVKNKQIYITGDFNLNLLNVKIDNDVKHFLNSLFQYNILPLINKPTRVTLLTE
SLIDNIFTNIFTTCNIQSGIIKSDISDHFPIFFISDFYIKEKKSKVLTEIKRQITEFNIKEFRNHLLKVNWKQLHNCKDT
NKAYAFFYNEFLNAYDKAFPMKEIKTKCKNLQSPWITKGLIKSSKKKQKLYEKYLKKKTYQNEKKYKTYKNLFENLKKKA
KKNYFSTLLQNNIGNTKKTWDIIKEVIGKEKKTRGNYLPKYLYTEDERTITNEKKDIANSFNNFFINVGKNLANKITPGK
KNFKSYLKEKDYVMDELEVSPDELRFAFNMIKPNKSAGLDGISPKVVKEVFDIIENPLLIIFNLSFKNGVFPDLLKLARV
VPIFKDGDISKLSNYRPISILPCFSKILERIMHNRLYNYLTTHKVLNNNQYGFRKGHSTEHAVIKLVKEILNGFENNQYT
LGVFIDLSKAFDTVDHDILLYKLEIYGIKNNNFKWFCSYLKNRKQCVSYDKTYTKLENITCGVPQGSILGPLLFIIYIND
IYLSSSILNFNLFADDTQVFYTHSNIKTIFTTMNSELDNLNEWFKANKLSLNPTKSKYTLFSKSSKSETLPLKLPDILIE
KTKLQRTYCVKFLGVLIDEQINWKEHINLIENKISKSIGIMYKTRYMLDKNCLKSIYFSFIHSYISYCNIAWASTYPSRL
TCILKKQKQASRLILNANKYTSANPLLRKLGVLNVYQLNIYNILLFMFRLKYHMLPNIFEDLFFIIDHKYQTKHSLLNYQ
VPKTLLKQSEFSITYRGPHLWNSFLLNNSKTTTSIQTFKSILKKQLLDYDVSQILFYF
>Crack-1_HM_pol#LINE/L2 867-4792 After removal of a 855 bp insertion.  [Hydra magnipapillata]
MNNKTIDFESMRFNVFETANNILIDADTHIFQMNNFDSRYVKTETFKTELETIKNNFTVIHINIRSINKNFDKLKHFLID
CNYLFSMICLTETWCSDESIQNNTNFQIPNYKLISSERKTCKKGGGIATYVRNDQAIKVRKDHSISNADSEVFTIEIINS
KFKNIIVSTCYRPPEGNIKTFSKYLEEIFLKINKEQKKLFCIGDLNIDCLKYNEFPITKLFFDNMFQHCILPIINKPTRV
TLNSISAIDNILTNSFLDTSLKAGIVKIDITDHFPIYFTIKNDTRVNNNLKKITYKRKINKFSIQNFKDTLSAVDWVKVY
QECNLGNTNSAYNTFTDIFLKHYNNHFPIKEKEIKVKYLSCPWITSGIKKSSKTKQKLYVKYLKNRNEINLSTYKQYKNL
FEKIKKHSKKIYYSKLLKKTNGDMKKTWNIMKEIIGKKNKKTNSLPDRIIINETEHDDKNSIAEHFNNFFANIGPNMASE
ILTTNDSFENYLTDLNSELIFNGLSYEELENAKNSLKINKAPGIDEICSNVVINIFPIIKKPLFEIFKSSIITGTVPEKL
KIAKIVPIYKTGEPYLLNNYRPISILPVFSKLLERIIYNKLYIYLTNNNILNKKQFGFQKQHATEHAIIDLVNSINYSFD
NNEFVLGIFIDLSKAFDTVDHEILLKKMEKYGVKNVALLWFKNFLLNRQQCLNTDENICSKMLKIKCGVPQGSILAPLLF
LIYINDLPKASNKLDVIMFADDTNLFYSSPSITELFETTNIELEKLNNWLKSNKLSLNTEKTNYILFHPNQKRKKLPNIL
PLLRIKNKNIERTTTTKFLGLLIDQNISWKAHIDYLNTKITKNIGVLYKARPMLSQENLKHLYFSFIHTYYTYGNIAWAS
THKSNLKSLYQHQKHAIRIVYKKDKLTHAEPLFKLLNALNVYRINIYQNLLFMLKFKLGLVPPHFLNEFFKSNKNRYDTR
EVGNFNVPFRKTKLSRFTISXRGPYLYNKLISKNAIITKLDNINCLKILLKKFVLNISNYLNFH
>Crack-6_CQ_pol#LINE/L2 3-1592 Fragment [Culex quinquefasciatus]
SQKTFLLLPTDQFEIITLIDSFDNNTSCGYDKISSSILKKVKLIIAPILTEIFNLCMLNGCYPDKLKIAKVTPVYKSGSA
SLFNNYRPISVLSLLNKIFEKILFTRLNNFLCLNKFFCAQQYGFRHKSSTKNAVIDLVNKIQTHLDQKDDVLGLFLDLSK
AFDTVDHKILLTKLNFAGVRGVALELFKSYLNNRVQFVSLDGIDSLTALINVGVPQGSVLGPLFFLVYLNDLALLPLKGD
LKLFADDSSLFYFNKSMVINDINLNNDLRLLTDYFRLNKLTLNINKSNIINIKNSNRSTVNPLTLTRTNFADIKIVDECK
YLGVILDNKLNWSSHINNLLNKLNQIIGIIYKIKHKLTANVLLIIYHSLFNSHLSYITSVWGNSCNILINKLQIAQNKIL
RIIYKKPLRSHSADLYNINKNIIPVRAIYVIQTCCFIYLCLHEQTHSNTKFKLSNHQHFTRSHNLLDRPNISTLAGERCI
SFKGAQLYNYFWNRFGDCQSVSIFKNKLLSFLNEPAVIEHILKSFDFLVT
>Crack-3_CQ_pol#LINE/L2 1569-4472  [Culex quinquefasciatus]
TTISATHYATNAYVGNPLNLSLPASSNVIKILQINIRGINRFEKLDSLCLFIRNLNTVVDVIVVGETWLKEARSQYYNIP
DYQAIHSCRRTSAGGLAIFIRKELPFAVTANTTNQGYHHIAVKLHAGKNQVLIHGFYRPPDFDAVHLASSIEAILANADT
ADPCLLVGDMNLPVNNPEARDVQQYTQLLNSYGMAVTNSFVTRPSSTNILDHVVCSVANSSRVSNYTMDCDLSDHSYVLT
VLKLKMEQERRTLTKTWTNYTAVNDEYRSFLQEYQLDLLVPNERLQAITERYALLTKKHTRTTTVEVKVKHNCCPWFNYD
IWKLSNIKDKVLQKWKANRLDEVQTELLARANLKLNEAKRKAKANYHSRLFCTSNPKLLWSRINEVLGGKSKANSKVQLE
VNHEIVEDPSSVSNIFNDYFASVGVNLGSQLTSDGNIHKFGTMKYATRSLFLRPVTSLEVQNIIFALDPKKAQGYDGFPV
AALKRHSTLLASVIKDCFNECVSQGEFPACLKRALVHPVFKGGDPTNPSNYRPISVLPVLNKVFEKLLFARIYNFLIATE
QLYRHQFGFRKGSSTEVAILELVDEVSKTLDDKLSAGSIFLDLSKAFDTINHQMLLKKLESCGLRGLPNALLQSYLSDRI
QQVVVSGIRSEIQFVRCGVPQGSVLGPLLFLIYVNDMSKLQLHGKTRLFADDTAISYACPSPVVVVQQMKEDMELVFNYL
ENNLLALNLSKTKMMIFRFLHSQLPEYPSLSVRNTVIEEVACFKYLGVYLDNRFNWDNHVRQVIAKCSSLCGILRRLSRS
VPHHVLLKIYLAYIHSRYRYAIAVWGSCPKVYLKELQVQQNRCIKAVYKLPFLHPTRELYSMPQHKILPMYGLYTQSVAV
IMYRILNNVNIHHNWEFEAAIHDHYTRGSTDLRRTGFRTELGRRRFKIRGPTLYNELPENMKEALTVNEFKRKLTIYTRE
NLNNFIVR
>Daphne_DS_pol#LINE/L2 1-2706  [Darwinula stevensoni]
PSFQYSLQGYSSEFFCRSSTRGGCVALYVRDDHPAIPLPELSQLSSENNIEITAVRILNPNWKHLPDLPLIALSVYRPPN
GNFTVFFNTLELALSKLSPAHNSVIIMGDFNIDLLKNSKNSKRCLDLFTCFGLFPCFFLPTRVSRSTETLLDNMFTNISP
CNLYTDVVPNDDSDHRQLCLRIPLEIKTQSYPPTNFRRLLIPSAVKKASNFLESINWTSLMSSKSVDDQLDTLMGKIHAS
QARSLPTKRITPRKPSKSWLTTGIRISSARKNALFLILYYGPSNLSLLKYYKRYRSILHRVIRKTKQMSVISEYEQCSRD
KNPRGLWRLTNRILGRDATHTIVGLRENDLLLTNGEDIANRMRSHFSSLFSPHTPPISSVPVGSSPQFSFFLQPITELET
LTIISHLSSTKATGPDNVSAKFIKKIAQSIALPLTLIFNNSLSTGVFPSALKQGKLIAIHKKGEKDIVSNYRPITILPVI
SKVFEQLVQQRLDSYLNCISFISQSQFGFRSNRSTQDALLHFLKEVQSILNRNQAAVGIFYDIAKAFDSISHKLLLQKLE
SLGVRGVANSWFQSYLSNRQAAVHHRDHTGRVHVSEPINITSGVPQGSVLGPLLFLIYINDLPTNAPKIHLTLFADDTTA
CLPVSRNSTPTSVSTSCDIAIDSWTTNNGLRLNASKTTRVLFSTLRRTDPPLTFATSTTFLGIRFDPYFRWDNQVDHVCR
LLKYAAASIYRLSSILSQEDLKKMYYALAFPHLSYGLLAWGHCSERHVCRILSLQKRIVRTILHKSIRTTCRPLFPKLKF
LTFPSLVLFHTSVYFHAIVSKNEAISNAGVHSYDTRSKNDYHRSIDSSALASRLIFSWGPHYFNSIPRSIRQLNHTAFRR
QLKELFLSHPLYSFSEFFDITW
>L2-9_NVi_gag#LINE/L2 151-1572 [Nasonia vitripennis]
MNLSTPKVRLPRNSGTNSTKSNNLAVTTPAPKPAASEGKSTPEEVEEAISTKQSTTPDAGHHCALPSSMLNLFSSQFELL
ERAVEDLRSLISRKFDAVAGATVGAPASSGHQEDFTARIASLEGKIDAQSTKLDGLHNDRMLLLQENTVLKEQLNGLVRK
IEGMADSVASKCRAHDVSHSDSDADDSRIMISLRDIDVSASCMRDAGSPVIDVANDFKQIRAAARSRVGGRRRRDAGAQF
VSRAVDGESGSVSGDCGSDSRGIESESGGAGSSQTTKHKRLSPLSSNTSELGGMRGSENEADLIISNVSDGTDAQRLNVA
HAVLAAIIPSISRDDVVSLRMLRREVDDGHGSRQRRSPWVVRLSRRDIANSIMRAKSSFVAFSTKDINVSLLNEETRNSL
ISSKIFINELLSNDNFIKFNNLKRIARGLNFKYIWHRGGRFLIKRGDGDRTHEFTSAADLHALAASYNNNNTC
>L2-6_NVi_pol#LINE/L2 1967-4906 [Nasonia vitripennis]
QSEASIPKTVSAPARKSSKIRIAHLNVSSVKAHFNEIEILLSDNSIDVLIITETWLTPSMQSSLFSIPGYNFIRNDRGLV
SSRILNPATEDDVTYVLGGGIGFYIREDLRFTLLEASYISNINETEYMLISVDCGSKILLGGVYRRPKGHTLSKFFNSLQ
NHSHRFGNVVVAGDLNSDLLSDNYYGNHLRNLINENNFHFVPFGATHHTDSSDTVRIDVMLSDCGDKIMHYEKSAAPYIN
GHDYLLIDFTFDLPEKQELLIISRDFRRFSSAAFLADLLPDLSLPAFSDPLASVNDKLVGFQQVACRALDIHAPFTARKP
NRNATPWFTPDLKRRCKARDRLYSAAKLSRKRAAIIRYKTARIEVKRAIRSAREEYLLHGCSVRTKCWGFLRRNGLVSAK
SKSPLHFFDKDTLAKYYSSVTCAHLVCSSDSLRAILDGQYNSLGSAFEFRFRNLDCVEVAQFMRACLSKAKGRSCDELSL
SYFEQVIPQIAPFFTEVFNLSISSGVYPSIWKKSVIVPLSKCSTPSSPGDTRPVANIPHFAKVFDKIITDQVIAYLEDNN
LISPYQSGFRSNYSTQTALLNVTEDIRRGADMGLLTLLLLFDFRRAFDSIDHATLLAKLKSIGFSNDAILWFHSYLTGRS
QAVVGLDGTLSDFLPNTSGVPQGSSPGPVIFLIYINEIVSVLRHCSKSCMLFADDLQIYIQCAPGDIGRAVASLNEDASC
ILKWSQDNGLLLNVAKTKAIIVGSTQHHMRLDLQRIEPIVVDGVPIPFDDSVKNLGVILSKTLSWNAHVSRTYSNAHFAL
YRLRFKGYCLPTSLKTQLVNALVLPYIDYACLVYMDLPDYLAIKLQRLCNSAVRFIFFLRKDAELGPYYAKLGWLSLNHR
RNYYLGITLYKIFVHKRPGYLADLFALPNEDLRRSVRNNPSAFVIPTARTEIFRNSFTVKGMHFWDSIPTTIRLSKSLGA
FKQRLYVYLLSLQQCYVHY
>L2_AC_2_gag#LINE/L2 1550-2509 L2_AC_1, 3-7 near-identical.  [Anolis carolinensis]
MSWQETSRENELFYLCDLLGKSFSTVLQQLETLNKKIDHLFKGISLMVKNPSPIDIIQTVPTNFININEELSALESQGRK
RLEEQKEGNRSGLEGARDGEESLSGEESQSQGRDGWKETNRVSQRTNNTLSPELFGHSLDTYCNSQHLLRTNKVAVEVQD
SLLNRGRWTSKRAVRTSLSQILSLSWSKVKIKTIDWLRRDYQSWNRSICLLIGLEDRTLMEELFLYRPKLQQWGITLRRV
LVDPLIRPLDIRLNLGRQDPPILGHVYATSQSRSPTSLVPSPLPTLDDNLLDDSFPLTPAEIGSSFKQSSIAGDFLSQDS
>L2_Plat1i_pol#LINE/L2 1544-4684 [Ornithorhynchus]
PHHFLLPPLLPSAPPDTHLPLPLSRPALSRFLLRLLPSSPALTKNLTLPAPPLIPLPLRSSPPNSLLPPTPHPGPSVPPP
RLILLSPPRPPPPRSHPNPALPPLSPPPSPATTAAFKCGLWNPHSITGKLPFILVLFLSRSVLLLALTESWLTPEDTVSS
AALSSGGLSFSHSPRLTGKGGGVGFLLSPRCRFRTIPLSPSLSFSSSEAHVIRLYHPLQILIAVICCPPGPASNFFNHFD
PFLTFLLSFSMPTLILGDFNIHMDVPGDSSAARLLSLLDSANLLLHPTSPTHQLGHTLDLIISNRCTISTLTNSEIPLSD
HNLLTCLLSHTPPPRKSVLLPHRDLRSLDPIHLSQRITPHLASLPTLPTLDDQIDALNSTLSTQLNSLAPLSLRRSRTTN
PQPWITSTVRLLRSYARAAERCWRKSKHQADLVHFKFVLSCLNSALSSARQNYFSSLIDTHAHHPRQLFRTFNSLLRPPV
PPPPPSLTPNDLATYFIRKINTIRSELPKITPPPPPSPLLSTPSSTFPSFPAVSSEEISSLLSSATPSTCASDPIPSHLI
KTLAPSLLPSLTSIFNRSLSNGFFPSAFKHAHVSPILKKPSLDPTAPSSYRPISLLPFLSKLLERVVYTRCLEFLSSNSL
LDPLQSGFRPLHSTETALSKVTNDLLLAKSNGSYSILILLDLSAAFDTVDHPLLLNTLSNLGFTDSVLSWFSSYLSGRSF
SVSFAGSSSPSHPLTVGVPQGSVLGPLLFSIYTHSLGELIRSHGFNYHLYADDTQIYISSPVLSPSLQARISSCLQDIST
WMSSRHLKLNMSKTELLIFPPKPCPLPDFPVTVDGTTILPVSQARNLGVILDSALSFTPHIQSVTKTCRSHLHNIAKIRP
FLSIQTATTLVQSLILSRLDYCISXLSDLPTSCLSPLQSILHSAARIIFLQKRSGHVTPLLKNLQWLPINLRIKQKLLTI
GFKALHHLAPSYLTSLLSFYXPARTLRSSGANLLTVPRSRLSRRRPLAHVLPLAWNALPPQIRQTSTLPPFKALLKAHLL
QEAFPD
>L2_Plat1a_pol#LINE/L2 1417-4647 [Ornithorhynchus]
MLLYYRFRLLLFIVVSAATHLSGLAMSLLPPSPLPPLPILPFPFPSLAQLFPALSSVSSPPPLSRPRTPLYQRYPSSPSP
YSSPHQTPSSPPPPFSLPHPCPIPVLLSHRHPSSPSPRPGPRHLLPIQTLPSPRPSPPPPLAPTATFKCGLWNPRSITGK
LPFIHDLFLSRSLLLLALSETWLSPEDTVSAAALSGGGLSFSHSPRLTGKGGGVGFLLSPRCRFRTIPPPPSLSFPSFEA
HIIRLYHPLQLLVAVIYRPPGPTSDFFNHLDPFLTFLLSFSLPTLILGDFNIHTDVPDDSSAARLLSLLDSADLLLHHTA
PTHRLGHTLDLVISYRCTISSLTNSEIPLSDHNLLTCLISHTPSPCKSSLLPHRDLRSLDPIRLSNSISPHLAALSSLPT
LDDRVSALNSTLSTHLDSLAPLSLRRSRSTNPQPWITSSVRLLRSYARAAERCWRKSKHRADLTHFKFILSCLNSALSSA
RQSFFSSLIDTHARHPRRLFRTFNSLLRPPVPPPPPSLTPNDLATYFLTKINTIRSELPKVTPPPLPSPPPTPSPTFPSF
PAVSSEEISSLLASATPSTCASDPIPSHLLKTIAPALLPSLTSIFNHSISKGSFPSAFKHAHVSPILKKPALDPTSPSSY
RPISLLPFLSKILERVVYNRCLEFLNSHSLLDPLQSGFRPLHSTETALSKVTRDLLLAKSNGSYSILILLDLSAAFDTVD
HPLLLHTLSHLGFTDSVLSWFSSYLSGRSFSVSYAGASSPSHPLTVGVPQGSVLGPLLFSIYTHSLGELIRSHGFDYHLY
ADDTQIYISAPVLSPSLQARISSCLRDVSTWMSARHLKLNMSKTELLIFPPKPGPLPDFSITVDGTTILPVPQARNLGVI
LDSSLSFTPHILSVTETCRFHLYNIAKIRPFLSTQTATLLLRALVISRLDYCVSLLSDLPSSSLAPLRSILHSAARLIFL
QKRSGHVTPLLKQLQWLPIDLRSKQKLLTLGFEALHHLAPSYLSSLLSFYRPPRTLRSSAAHLLAVPRSRLSRRRPLGHV
LPRSWNALPPHLRQTDSLSLFKTLLKNHLLQEAFPD
>L2-5_NVi_pol#LINE/L2 1554-4319 via tfasty with L2-1_NVi_pol, 1 stopcodon. [Nasonia vitripennis]
RHTPIIPPKPPSKSSNSSTSASKASLSEGLRVCHFNANSLTGHIEMVRLFLSTRSPFHVIAVTETWLSDKITSIPSLDDY
ILYRRDRNRNGGGVALYIHHSLTASVISSSDGEWSGKPGKPEYLFCEISAKGVSPIFVGVVYRPPHSPFIQGSNFIEQLT
THMHNYSTKVIMGDFNSDQLSSSEDANFIRAFIDENSLTSVPYGATHHRQDSDTWLDLCLIDEQDCLLSHWKTDTPFING
HDLITATLDVQIPRHVPATYSYRNYKGICAEKLRDFLSACDWSSFTTSSLDECITILNANLTNAINHLAPLKTVTPGRKR
HPWFTAALRDLLTERNRLYRRFRKSRLPWDLYFYRIARDDAHKQVEEARLNYYYSRLSTLTDVAEIWRELENLGITTSKS
PSPARFSSDALNKHFSSISNDPQAPSVEEYLRTLESLDLPEHFIFRAITESDVSAAVSHFNTQARGSDGIPQVVISKALP
ILAPLLCQIFNLSLSEARFPSAWKSSLVRALNKVNSPTALTDYRPISLLCFLSKALEWLVHKQISEYLETRLYLDNFQTG
FRTGHSTQSGLIKLTDDVRLGIDRKKVTLLLLFDFSKAFDTVCHVRLLGKLSSFGFSKQVIRWLASYLSGREQAVIGDNN
ELSTSLPLNTGVPQGSVLGPLLFALYINDIGFCLDSDVSHLIYADDLQIYSxCHLEELDSCSVRMSANAERIMGWAALNR
LKLNVLKTKAIVLGSPYYINALPSIANTFINIGGARVDYESSVRNLGLVLDSKLTWKEHVTQICKRAHSLMYRLYFFRKS
TNFRLRQHLVQALLFPIIDYCSLAYCDLTQELDTKLQRLVNTGIRYIYGVRRDEHISPYRRELQWLTTAGRRKYFMACFL
RKIFNTSVPTYILAFFDFHVALRPVRGEVTPLDIPSFKTETL
>Kiri-6_CQ_pol#LINE/L2 2-2332 [Culex quinquefasciatus]
ALHRIHAAFNLTVLHTGPTRITDTSSTTIDLLITDGPQHIKKAKAASVSSVSDHEVVYLVADIRVPRTCQRTIRARNFRN
IDQLQLQADFQAKDLRRLFESVDINEKATVLNLELNTLLEVHAPERTITIRDERTPWITQQIKAAVGLRNLALNLYARNP
NRRRGDNQWLDYERKRDRASSLIFAAKKRYAELHFAHDLPAKKLWSNLKREGIHNTTKQSSSSADINADELNTFFSDGHR
RLGNAATPSHRNAPAEPSHRTAVDHGANGFSFRHTSVEEICRKIFEIDTNATGTDGIPISFLKMLCPFILPVLCHLFDAI
IETRTFPALWKTAIVTPIPKTSNPVLPKDYRPISVLPAVSKVLEKILLNQITEHLDNPNNPLLARNQSGYRKGYGTTTAL
AKVTHDIYGNLDAGRCTVMVLVDFSLAFNCVDHQLLAAKLNREFRFSRPACELVSSFLGERKQSVRHGNVVSAVREVTDG
TPQGSCLSALLFSLYINSLPASLKCNYQLYADDLQIYVSGEIDEVDRLIGTINMDLEAITHWATENRLHPNPKKTQAIVF
SRSGRVVPQSDIVFKGEVVPVAEKVTNLGLEMDSAMSWTHQVNSVVQKAYNTLRTFRRFSGVLTGATKRKLVQAVIVPIF
TYGDIVYYSGLTAALKQQLHRCFKSAVRFVYNLRRRDSTAAVRHSILGHDLPDNYNLRTCCFIKRGYDGNLPEYLQEHLV
HGQHQRTRSLIVPRHTASSGKSIMIAGVTLWNNLPIEAKMIPTLSSFKSALKRSFQN
>Kiri-3_AAe_pol#LINE/L2 1195-4039 via tfasty with Kiri-9_CQ_pol, 1 frameshift. [Aedes aegypti]
MSDNMLNNVSSNEGIYHIPRAVMNAALRKDFLNICHMNVQSICSRQLSKFNEFTSCFHNGKVDLICLTETWLTNDISDDT
IAVEGFKLIRNDRNYGRGGGVCLYFRSNLNCKKVSASDLFVGLGDACNTEFLFVEVSTGADKFLLGIFYNPPRVDCCELI
FQQLSDHILKYKNIVLIGDFNMNVKKDSPIVNRFCSVFDHFGFTCVGNEPTHYYSGGSSQIDLMFTNDPEFILNFNQVSG
PGFSAHDIIFSSLNVARSCFSSAVFFRDYKHINFESLNHTLTTIDWSALYSINDSNLALDYFNQVVLSLFDHFVPLRSSK
LVRHNKWFNNDISRAMVERDLAYRVWKRTKGQQERDQYKRLRNRVTMLINQAKSVYISRSSELSRSNNDLWRRLKEINVK
KSGAGMLFNNSCDEINNYFASNFTVDNYFPRLPPPNENGFRFVTTNEYEIDKMINSITSDAVGLDGVPLKFIKLILPFVI
TPITHVFNTIILTCNYPRAWKTAKILPIRKKSRGCDLKNLRPISILSALSKAFEKILKNQMLEFLNNFNLLTDVQSGFRA
GHNTTSALLKVHDDVHRTIDRKGIAFLLLIDFSKAFDRVSHYQLLRKLSDQFNFSAPAVNLLQSYLTDRSQQVSIDANLS
EIAHIVSGVPQGSVLGPLLFTLFINDLPSVLKYCSIHMFADDVQIYFHSCNLSSSEMAHLINEDLSNIYDWSCRNTLPIN
ASKTKIMHISRARQSQSLPVISLGGETLSYVNHVSNLGVIFQHDLEWDSHINTQCGKIYGGLKHLKLTANMVSVEIKLRL
FKSLILPHFLYGIELFNNASARALDRLRVALNCCVRWVYNLTRFSSVSRLQHNLLGCNFYDFFKLRSCITLFKIIKTTTP
HYLFTKLQPFRSMRTCNFVLPQYATSHYGGTFFVRGVVFWNQLPLEIRSIDRLDRFRTECREFFNRRN
>L2-1_AMi#LINE/L2  3-1171 (fragment) via tfasty with L2_Plat1i_pol, 3 frameshifts and 2 stopcodons. [Crocodylidae]
HAXPSEHAASXSTTLSFLSFCPLNCCSISNDLFLAKSQNQYSILILLDLSAAFDTVDHALLEILSSLGFRDSVLRLLLPL
xLLLGNSSFLPLSVGVPQGSALGPLLFSYTLSLGNLIRKHKFNYHLYDSQIYLSTPDLSPSVQTKISACLSDISSWMSSR
QLKLNMAxNRALNLPPKPAPHSLFSITVDNTTILPVTQARNLGVIFDSDLSLGPHIQAMSKSCRFFLHNISKIWPFLSIH
TAKTLIQLSHLDYCNILFSGLDKCNLAPLISIQNAAAKIIFLAYRFDHVTPLFASLLAPPSLSIKHKLLVFTFKALHGLS
YLSIISHSLSRVDSRLQSAHDASLHRPLVKFSNSTSFFLCCSPHAWEELPVNIRKSHYSPSNPSLNPPLP
>L2-3_NVi#LINE/L2 936-1778 Probably missing N-term, via tfasty with L2-5_NVi_gag, 2 frameshifts. [Nasonia vitripennis]
MLKWRPSRPRTSCRRGFLKLSSGLGPLEKRLKALDELPALKTRIHNAESTITELQAQIQDLSSRSPTMQQDNGSTVPNTA
EICSLRSELAEVKRRQEQTSNCVVVVTGLHYTRETSLHLLAFSVVNALDPTVLRRDVASVRTMGRLDATNSSARGDGRLP
PLAVTLSSSALARSIVIAKARKRKLHTSELDATLLEEAKALSPDHQGLININELLPSDVHKLRTRARLEAKKRQGCRTFV
REGRLYIMRCNDDSERATIINTDAELETFLARFPPAANIVQH
>L2-2_Cis_gag#LINE/L2 58-924 [Ciona savignyi]
YLNKYNLNKPCKKIMSPATPKKPAATTTLIAKMDNVLEQVCANKQELNSKLNAVLTELQDIKQSQAFLSKKYDALLNQSN
KTNEEMKNMKLENATLKNDIEEMKNEVKLCKKSINALEQYGRRDCLEIKGVQYNDQENTDEIVIAVAKSIGVNITRSDIS
ISHRLGPFRTATKNNQPTTIIAKFTSRKSRDNVYNNRSKLHKPYTPGSQQSRIYINESLTKENRRLFNNCLQFKKSNNYK
FLWTRNGVILLKRDDASKTITITDEEDLQRNEIPINITSNHPVTSNIV
>CR1_Ele12_pol#LINE/CR1 1348-4398  [Aedes aegypti]
MRMQTFVFSSDLTLSSEEVDDNLTRSSEVEYKQTTQIALDSFNEINSSSSSVNSSGTSNEIITYCQNFNRMRSAAKLTEI
HRKVSGCAYSVILGTETSWDESIRSEEIFGNNYNVYRADRNYQWSEKKSGGGVLIAVSAKLNSEIIVTTKFKEFEHVWAK
VQLSGETHIFVSVYFPPNNACKETYDKFFSVAENVMSSLPPEVKIHIYGDFNQRNIDFIPDMDNDYILLPVIGESELLQF
IFDKIANLGLNQINHVKNQQNCYLDLLLTNVSDDFCVNEALTPLWKNEVFHTAIEFSQFISNTDFYIDNEFEEVFDFNSA
NYDNIRNKLNNINWQSILRSKDDVNNSTEVFYNCLFKIILEEVPIIKRRCNGFSKHPVWFNKEIINLKNRKQKLHKIYKK
HKSQENLQVYLNMSVQLNSAMRLAYESYNSKTEQEIKNCPKNFFNYVKSKLKSNNFPSTMYFNEKVGHTSQDICNLFSNF
FQEVYTTYSEADRDYEYFDFHPEFPNDVGISHINVHEILNGLKNLDATKGNGPDGVPPIFMKTLAIELTTPLFWLFNMSL
ESGVFPKMWKSSYLVPIFKSGKKSDIINYRGIALISCIPKLFEAIINEKVFIQIKNRITTAQHGFFKGRSTATNLLEFVN
YSLSAMENGNHVEALYTDFSKAFDRVDIPMLIFKLQKIGIEAKLLKWIESYLTTRELIVKFKGKKSTPIHATSGVPQGSH
LGPLLFILFVNDLSFILDKIKVLIYADDMKLYLEIKTAQDIHTFKHEVQIFHTWCQKSLLQLNVKKCNLISFNRKRDIPN
VTITLGNQNVEKCNRIRDLGIILDSKLTFIDHYNTMINKANNMLGFIKRFAYNFNDPYTIKTLFIAYVRSILEYCSIIWS
PFSTVHDERIESVQKQFLLYALRKLGWTEFPLPSYKARCMLINIQTLRERREYAMISFINDIVSHKVDSPELLSKLNFYV
PSRRLRHRELFAINYHRTNYAKFGPMNQMMTTYNKHYNSIDLTWSKAKLKQYFRTLS
>Polinton-2_NV_pw#DNA/Maverick 10819-11358 [Nematostella vectensis]
MNILAGLAAPLLAPILGPLFGGQQGGGSHAIADAGIIGGYDIRNPPPFIDMEQRGMGSKAFRGAPIGQLGWGGSHGEAFR
GHPVVVQTGGGLGSLDTDLPFDVSGSIPIGHTTFETASPNTKRQIAHRVKIMPKTVPLGVPSPIVHPPTKPRRSHHRRRR
VTPSHRRQRGGARPMDIFD
>Polinton-2_HM_int#DNA/Maverick 33643-35928 [Hydra magnipapillata]
MEDALRDKIDRLIEIQLDDLSSRLFGLTNLSKIKKIMSQFNTLKKNVSDLKFYEKLKTILENSVFAKWDGMITAWSHQTL
LFKKTANANVKKQAPRKPYVYETHRFSYEKPHQYFQADLADMESFNFNPGYRPDYCLVVVDGVSGKVYLRVMKKKTAEKT
VSSFRHIFKDIKRDDDKSFIYLQTDEGTEFFNSKMKEWCESENVHHFHSKNYGKAYLAESVIGRLKLLYQKLRDKGQLKK
YNWSYYIEEMEQKLNEKEKTSSGISPEELDADDNKGKALRMIDQYVSNKKRKHDFTSNMLHRVEKEHKNQKLKILKPLSV
GTECYLRKYKKDAKDTFSKSSTRNRPYWDTTKRVIIMKVSKRTNPSVQGYLPVHIYKVGQVDDLNTTYKVKREDLLPINE
EDKNIYFKNFNEYVDTFYKPLKKSLQKKIIVKKMNNLVFDDVLDVNKYDCSTYFFSEIKSKEQENVHYNVLNDFSLPLST
NDLDKPFFKNNTIMHLSSMDVPTNLTRIDENISLTENSYGTRMETKPSIKQMMTDIQNDMISNPNRKIPFYLVTKKIILY
TDFAXLPGDTFQNYDLLRVEHMDAVHLEYMCSIVGYGKLFGVTSPSPYQDDFLIRRLELFNTSLNRRLTFADFFSNYQNK
SNNITNQKYFNLKYLFDTNTHLRYVTNNENTIISKLSIEPNGNVKQYIQNYSYINAPNYNFVWYLKKKTNENLNNPSNLY
PIRSSISTKSNERGLSYFGFFFKPNKCITIRSTRFYIINTI
>Polinton-2_NV_px1#DNA/Maverick 8750-9784 [Nematostella vectensis]
MTEQQPFYVTLPSNAIEGALPGNTISDFTIRTSKTFDLRDGRWQVGLVHLIYPRSWLKFSPEDTDIWIYHKTPDPVWYAS
WADKDNPNALIPQDKINNKWTHIKLDDFQTPKWHQVAFNLKKAVDQFNGGRVKVRKQLGQCDVVDVLVAIDTLTKQTNIA
IAKGNQLLLRPRAAMAIGYRQWISGEWVMQLHPDDGVLPPNYQFGPTEAHRTLLNWVPFSYDALSLFPGSGDFYPPASRP
FASKESDIIIEDLQPFQNMYVYSNMSEGNLVIGSDSSNLLRVITPEEGHGGAVERDFTVPYYFPVRTQLVDRIHFYITDD
KGQPISFQSGAVVGTLHFQPILFA
>Polinton-2_NVi_py#DNA/Maverick 5075-6421 via tfasty with Polinton-1_TC_py, 2 frameshifts. [Nasonia vitripennis]
MAFLHTHSCECLKSELLLFDIPPTQTTIEGSHWVQYKPISSLTDDSPIEFVIPGNSDEYLDLAHTMLSLRVSIKSSTSEE
DVAEADRAAYRLLTARVGPVNNFMHSLFNQVDVFFNQKPVSPPTNAYAYRAYIETLLNYGPAAKTSHLSTVTCPCGVTIR
HGKMNNTENLNEGFVERRKLLAANKPVDLVGHLHTDVFNQEKLLLNGVEVRVRLSKSRDNFCLMDPAGSFSVHIEEANLL
VRRVKISPSILLAHAQSLSRATAKYPLTRVEVKAVTMHSGVHGETLDNIILGQLPKRIILGFVNNKAFNGDRLLNPFNFE
HFNINFLCLYVDGVQVPSKPLQPDFTTRNLYVDAYHTLFSGTEIHFLNEGNQVTRENYPHGYCLFAFDLTPDLSANDCSH
WNLIKHGSVRLEVRFSNALTETVNCILYAEYDNILEIDASRQVIIDFSS
>Polinton-2_NVi_px#DNA/Maverick 3619-4446 via tfasty with Polinton-1_TC_px, 2 frameshifts. [Nasonia vitripennis]
MKDQFYIILPSNSSMNYFSENTTTHYVTQLPQQIKLQGSWLVGAHSEVQIPLTFQHVPSEKEERKISLKRIPPTRLETNE
TREENFTITESLIRPGNYTNILTLVEEINNLECIRGHLRVTVERGGYVTISRVCAKSSCSQFSHELYLSEKVKKILGFEK
ERQGICFIGNQYTIESDRPAGLSNGLPSMFMIYSDICEPYVTGDVQSRLLRAVSMNTDNYEYGTTRIKSFSPPMYIPLLF
NAFQTIEIDIRDQCGQSIPFDYGTVTVTLHFKKVDD
>Polinton-2_DR_pz#DNA/Maverick 7967-7188 [Danio rerio]
MSTLKYAEKMYLVPQHQLDKIKPTTPRESIQHAVESDLDTTIRNILYRTDIDPHEKAKLYTAVLQRYLTITKQGDMDATT
LKLSLPQHDHTDKEDPQKTITIGAVEDLIVDDILKNIPQRNEKNVRYILDKMSKSKDHASWSESGEFMFKGKTIPGSHML
DLVKSITAPQKIADDRRPIGWYEFLEAFADLNIPYSMVPNHGVRHTINSFKNKSKSPTSVSFKKGKKLKTQQSSHMTRSS
YLEDTFFESPTFDRSRWMAF
>Polinton-2_CB_atp#DNA/Maverick 7640-8257  [Caenorhabditis briggsae]
MNLLLDAYKGEEYLDYNNLYIFSTTLFQPCYQALINGLSEGLSKKEIRECFKKQDFIIVEKEIVKSTINVVSSDSLQDIP
DPSSLDPNKKTLIIFDDLLLEKQNKIEQYYTRGRHSGVDCFYISQNYIKLPKNTIRENANFFIVFPQDKMNLDYIYRDHC
SEIKKDEFLEFTRDTFKEKYNFLTIDKSSDLDDGRFRKCLKYFYVF
>Polinton-2_AMi_5p#DNA/Maverick 7519..7920[Crocodylidae]
MSHEGDQNPPLSDYLGDLTSEIPPDEHITEFVSAGPKTYGYKLSGGKVCLKVKGITLNVANCEKVNFESLKDLVLDYGAN
PARDIPKTIAVKLNSIVRNKQHWTIETKTIKKTQKVVYDKRVLAENFKSHPHGF
>Polinton-2_CI_pro#DNA/Maverick 679-242 [Ciona intestinalis]
MNNLQIEAILSQFPACKGVFKGVFARDQTSDLTVTYPSAYIFNTDPSYKSGEHWVAMFFDKKGHCEFMEFGLHPYLPDYI
TFIQTHSSSWSYNEQTMQSIYSNVCGYYCVLYVIYKCKGKSLKRFQKLFTSNKNLNDSKIITIFNS
>Polinton-2_DR_px#DNA/Maverick 3824-4669 [Danio rerio]
MAEDGFYVTLPCNASLSVYPENRISCYTTRLARTINLKGEWQVGLIEFEFPITWYTFSEQDCRFILNNGETKVSDGLRYD
NYGEGKEIDTLINTNQNISNELYMLKYGYYDDILFLIREINANMPPQVKLGYDHVKNKVFLKAPPKMSLTFFGKLAVILG
LKPGVSIESANHTRENHSTGTTPVTYAPYQADINAGFYSLFIYSDIIEYQSVGDYYVPLLRCVHIAGEKHKVVSVRYDKP
HYAAVNKTSINEITIQVKDDQNQEVNFSYGKVCAKLHFRPVK
>Polinton-2_DK_polb#DNA/Maverick 1358-5598 via genewise with Polinton-1_DGr_polb, 2 introns (2393:2553, 2764:2896), frameshifts too [Drosophila kikkawai]
MNTNNNNSNIISTSSTSTSNAGSIPPLAVTSGIYCKYCKIYLPMGVQWKNHIRTEAHKVFATQHITGSVKQILDGFKGRI
LQYMFVNEGPAVRNPIEFFDEAGVAFLPHLKKALTTHLCSKINFEFFGEYMLVKEHDTRVEIKSFQTKMTFITSASNLPA
YMNFHKEELEIKMGEFQERDSGWTLIRIIRMEMNMMKCDPMKGSAHFKLPEILQRKNAVINVNNNDXFCFKWAILSSFST
NDKPQRCSIYRVNISSDVIYAEGGVKLDFTGLNFPVVLDDVKEFTAQNPHISINVLGWDTDINKVVGPLYSDGVEKNKHI
KLMFVKGPTANVPGHFVYIKNMSRxGGRGYFxxQRSGLGPLYWASxxELKYKRExEIKTxRAGAAAQRCDDxPEPKHPLE
ERERKLRARARAEGxLSAQMGKHQEARLFCNKCLVTQRIICILEPMSVAVSEKTKLINRHVPISFAYYIKCVYNSNLDKL
VLKTGGNVSRTFIENLTSDLSEIYQNHMSKIIPLQMSQKDNLNFNAALNCHICKGKLGNDRVEYHCHFTGRFRGAAHNDC
NLKFKTGNFIPVFFHNFSKYDAHLFVKDLGETEGEIRVIPTNKELYIAISKYVPVGKNTLEIRFLDSFRFMSSSLETLAN
NLNDEDLNVLSQQYPNREDFTLLRRKGVFPYEYLDSSQKLEDISLPPREKFYSNLTETECSEDDYAHACKVWSHFKCQSL
KDYLELYLKTDVLLLTDIFQNFRGICLQVHELDPAHYFTIPSLSWDAMLKTTQITLELLTNIDMIRFIQCGIRGGLVQCS
HRYTKANHKYLKDFDSTKESEYLMYVDANNLYGWAMSEPLPYAKFKWLEVEEVEKFNVENISDDGEYGYILEVDLEYPYS
LHDLHNDLPFCPANKLPTVNSKAKKLIADLQDKESYIIHIKTLKQCMKNGLKLKKIHSILEFKQKPWIKIYIDINTEHRT
RADTTFKKDFYKLLNNSIYGKCLESTEKKEDVRLVTEWEAPPSGPQGGFPRLCARELISRPNFHSATRFTDKLNAMYSAK
EITKLCDKPLYLGFVILELSNYRIxNQNYENKLKLNYMDTDSFVYSCKADDLYADIRNDIEYKFDTSEYSDELAKQYNFK
QCNKKRLGFFKDELNGRSMTEFVGLRSKMYAYKSESVGNQPEKCVKKNKGIKYSSLRKITFDGYKTCLFTGQQEYDSMCM
FRSRGHEISTIKITKITLDNKDDKRIICDDRVSTLAIGHYSTVENRIRGEMAILEAQSQDLESQIQRQTDSSQSLIRTER
LKRKLKENESATINQMTHLIKHFASDYYAKKLKEC
>Polinton-2_SP_int#DNA/Maverick 2403-3488 [Strongylocentrotus purpuratus]
MDEYLKKIYGDPENEAGFGGVEKLYRYVKKDGVYNLTRKQVREWLAGNETYTLHYPVRRKFTKSRVMAYAMDELWQLDLV
DMSSLSRYNLGYKYLLTCIDVLSKFAWVVPLKDKKGKTLVKALKKILESKREPMNIQTDKGTEFTNRLFQSFLKKKGIYF
YTSYNTTKASVIERYNRTLKEKMYKYLTHRDSSKYIHVLPDFVRAYNHSFHRSIQTKPTLVTKANEGDIWKTLYMKKGLD
KNQKKNPGYKVGDRVRISRAKHTFEKGEDDLGEKVLGTFYQQELQKVRKDKEGVFRVEKILKRRTRKGKKEYLVKFWGYP
SSFNLWVDNIQKSYNDL
>Polinton-4_SP_pz#DNA/Maverick 7113-6337 [Strongylocentrotus purpuratus]
MDHARKMVLIPPTMLQSLQGGPSTSTHHPLDELDEKMRTILDRKDLNVHDKATMYSQYLQTFLKTSDNLRKPLPIEVRDV
QPLDIKDGMEVESPAVKDREQSDPIELEIIQHIPKSFVNRAHQLIQKLKINPTIGWTSAGQLVIHGRPVKGSNLCDLMYD
IFRERRGYVPSGSEQFMRILAEMNVPETLLSNPKRRQDLQRWKRLDGMEEEKEEESLVDRNEKVATRAGPGTFVNSTRPL
KERERKSNIDPLSQKWMHF
>Polinton-4_NVi_px#DNA/Maverick 4639-3680 R [Nasonia vitripennis]
MADFRREKAVLQQIDKAREAIRRKHRLLKQGKASMEKALGETFKPIVDPLEKLVRVKEEVKPDIKQELKKEKSFDDDVKD
DEDNEDDTLLNETADTSFESAQEDSEDEKIEKDSKIKNKHSLSLKENRHEKDTEMNNKYLSALMQNRQRYLDHVFGIRQD
GQILKIGDSPIEITRNNIIVLNRKYPKTEGLQELLFRLHPDEALIKSDDLQNYKNILEATNAHRKYYSYNQPIRQQNSKK
YNNIIAPLFKVQSKTGGGLLPRYKVARKGTLMDYIYWDDPNELVDRLRLLMAERLAGNNSHLNEIHSIIEELREAKIIY
>Polinton-5_NV_px2#DNA/Maverick 9137-9943 [Nematostella vectensis]
MCXYLDPETLTLSESSGSKVPTGEIQFRWHKIXXPKFKMNDTWETVTKHIKTTVTAFNESREGIRHGLKQNXLDLEFFFR
PSDKLTTIGVGRXNRVLIRPEIGSILGFDKSNASQGRXGPPNKXIPLSTIYPPDYPRERXWTDPLSRWLVFDYYYYSTNT
AVLGFDSKSNPKPYENHPPFQNMYVYSNLTDGNLMLGSKARNVLRVMANQGVPGGRAVERNFERPFYFPVRLRLIEQIHI
YIKEDTGRTVPFSSGSXKVTLHFLRVAX
>Polinton-5_NVi_p3#DNA/Maverick 16719-17384 [Nasonia vitripennis]
MEAMDAYLNHSFTFYQDFGNPSKILLPNHDVTFTNSFGARAIGIDERPTPTSAPTAEMTTHNGQQFISSVGGGGGHDEET
QQHPPAQPACKKQKKYESPPSVIMHQQTFAGLRQVKECIDLRFKQLEELSGLVNRGVDSILDYIKDALKREEAELCREIL
KNVNSFKQYYALHKYKIDEIVKTNLNFATVSVDVLDVVLTEIYAFGLARIAKDVYDVMFPL
>Polinton-5_NV_pz#DNA/Maverick 15467-16003 [Nematostella vectensis]
MTTQKGGAHRMAMIPEYMXNMIMTKKNVTTAPQFRIMARLDGEMRAILXNTSLPLDAKIRHYNRVLXQYLKWXXQVKDAG
APRTMARPAXPLPNLPSPPSQAKHPALPSXAKAGTPASITSHQHTRKGHQRRRIPMTXDKTTTSTREEKHVNWDPFLPDI
KSPPQDQHPGRTNPWXPF
>Polinton-3_TC_py#DNA/Maverick 5444-4224 [Tribolium castaneum]
MSASKLQVYSSPEIDDSISKEEEHTYSPQVRSFDNNDEIEIIINQRDIWISLFESFIQVDGEFIPDPVPETGGGNVTLTN
NAAAYLFENVSYELNNVELDSVREVGTVSTIKTFLCYGKDEVRALTLAGWNDQESQQLKTFNETDNTFSFRIPLSYLLNL
PFDYHRIVSGHQKLRLIRSRNDANCFISTGTRKATLKINNIELKAKHVYPNDEIKLTILEGINKDRVISLPFRKWEIHEL
PSVRQTNNDIWRVKTSTQLERPRFIIVCFQTNRKNNPKSDVTLFDHCDVRSVRLWLNSNVYPYETWKLQFAKNKYLEAYQ
AYVDFYKEFNGKDRAEPILSYTDYTKRPIFVLDCSKQNEAIRSSTIDISLEFESDNNFPADTRAYCIIIHDRIMQYYPLT
GIIRQLI
>Polinton-2_XT_int#DNA/Maverick 1488-2558 [Xenopus (silurana) tropicalis]
MTNEVLKKAYYTPQNIGSFGGVENLHQNVKNKGINRRDVKQWLSTQDPYTLHKPLRRNFKRNRICVSDIDSQWQADLVSM
TDFAKYNDGLKYILTVIDVLSKYAWVVMLPNKTGVTVSKAIESIFLSGRIPQKLQTDRGKEFLNSRVKALFKRYKVHHFV
TNNTVKAAIVERFNKTLKSKMWRYFTANNTYRYVDVLKDLIYSYNHTVHSTTHTKPTDVTSANSLTVWRNIYSDYFKTKK
IKPILKPGDHVRISKYKDIFSKGYEQSFTDEIFIITAVNTRGVKPVYSLKDTNDELIEGTFYGEEIQKIPENYNRVYRIE
KILKQKLVKGQIFYYVRWLGYTDKFNSWIEKKQLTAV
>Polinton-2_SP_pz#DNA/Maverick 7964-7452 [Strongylocentrotus purpuratus]
MEHTKKMTLVPEEMARAVQASMGSAQPAKRVLSKLDESIQSILGSSGVSDKDKVVQYHEALQKYLQLHKHEANPTSIHLR
VTEQPSTESMGGDAHPQSETEHTGSMREDVLKMLPVTLKHKAKLLMDHIFKQTEDANWRWNARGELVFDGRVIDGSNMID
LMYDVLKDRKI
>Polinton-3_HM_polb#DNA/Maverick 8763-13913 [Hydra magnipapillata]
MKFKKEISEEKYNNDVYYKKILWTSKRYSDESGVDDLIVSDQMTWDDVRVFIENKTRDVILKEMSRTKRQMPESRNFLVG
FVSVVMFYRSEADGYRLVKSIFRSPVHYVRTMEISKKIEELVHVNVEGSRHVSHIDSGFVLYNLSQFQAQIIGGMSTERF
VLLRNSIIGARDTLWYKIKKYDYRNKALCDNPLSKRNLKMVQQYLKRIQDDPLNRRKQYEDDPLSRRSLAFVSRFLKKKN
QAELFRFCPSYINKFELRNTCIDYSYMVEKGNCFYMSFLVSLVQIKKQWFSPNDWQESLDEERLIEYATNDCLDTKEQLE
WLKIRSFNISYEGLSILLDEISERSVLNKFNLVIFKWLPKPVRVHLKFEKRNRFQRVAYKRFTKLYESKKIFRDDHNPHR
VFANEIERVESNENLKRQNTIQLMLLDNKKGTHCVSLLTKRFQYRFENAFQGYVCDFCQNCYDRHRAHRTCAGFYKENKL
VYPLKKRFYEPQQVLFHQSRNCFPLYITFDCETETRDGQLFYYCHSVTLFCTNEKLSAEIFGYDTQGNVLRESSMFFLNT
KESMEFLFQKLPWSLRQHVNPLLEVVRLKRWQKVEDVSDLESLRVFDLFAICYVVISLMQEKLKENQLLRISRSERQQLF
DEELPKCTICKLSVDKRVYEKTILSSNHNVYQCEDAYHAPVVYILFGNISKMNHFTLSRFSSNYLQVTSKENIEKHLLYL
FRIFVCFYLFESRVLCRVQNGSLCEYLMVSNDTLLAIVNTVRRRFELEEETFEDMLSDSYFFYNEILFLVGKINCLYTDY
SVVLKYFDFTSSVSKLGQVWDHCLVAGSLSMSEETPSEYVNNNKATLETYLQSLVYRYIDHAVIDHDHWTGSVLGLAHSY
CNVQYGRVEKPRVDIFSHNAPFDHSVMINKHFEEFCSFPWSHKDDPDLGDFDNIVKRLSLEHSFFITDNMSKIKSLSFGD
FCVFKDSYRITNTSLADATRNLDTKTKEQVRLSVIHYLIKTKIVSHQRGAXLISNVEGTQFFTGKSCFPYSKISYESLEE
PLVDVDGNPCCPPIEDFLHNKLSRSKNEEDERVALKEPYENVVAMWKMLDLKKYSTLLEIYNVIDTIALAFVLFDFDNKI
YNELHFHAISQLSSFSFSSKMNSYIGNIAIQHPPSKEHHRMIEECMKGGMSTNGTQSVALDTSYFENVLNEQPNVSNKIL
IMDENGQYAGAQELLLPFAMRSFIEYHYQTLQEVVDVYGGESDGSFVKSALVRCVIKIDDRYHWLTGGISPCIKRDSISI
CDLSPSEILDKRKWDTRSNSFQIALDKGERLVYKLDEHETVESLDRLLWMTKHEHVIIVKILAVVGVVRYNLAKEFVSSL
SKKRAEANAVGDKVKDGSFKLMINGHYGWTARKSETYKNCKFIVNKQKCLRKSLQIIIEAVNYLKENGIFEIETYLPASL
TTLLDVHDVEQVCIDLSDKRIRRDGIDSYSSIYKHLILTEIFHFDTKSVYSPDKTINEFEAMSIALRNEKINEAFCLITT
KRNVLNDSLRLVACGILGHAKKSVTVFASVIKRALLKENIFCQLVATDTDSLFFSIYGDHCEDFDIKVENVLANDKDFES
MMDYSNYPKHHPLYSTRYQKMTHRFQNESPNKLITFVIALAAKCYKVTFVDDSHKFRAKGFPQQHLLSSHYVNGLSLFVL
ENYFDSTRSCLNRSSTLFKQNRLQFSTNGIALCEKK
>Polinton-3_NVi_pro#DNA/Maverick 8967-10098 via genewise with Polinton-1_NVi_pro#DNA/Maverick, 1 frameshift and 1 intron (9341:9739) [Nasonia vitripennis]
VVDVIRLPHRPLTDYDLLKYARLLKIPNFRGVFMRNDLPANKSHYRETAIINLDDKKGAGTHWVAYRKNGNNVFYFDSFG
DLQPPEDLMKYLKIDKVKYNYKRYQEFDTFXCGHLCLKFLCNQLDFRPKDSIARLLGFTPRLLKPYITHNSDLPVAILKV
NALRVECNITSGAYINQNQVHTIHEFFPAVPPGYKIIEVPKQIIYLPITVKIIDHLQLRIVDQDGDLVNLRGEVITIRLH
LKNV
>Polinton-3_NVi_p1#DNA/Maverick 8146-8979 [Nasonia vitripennis]
MITHNGSGLVNKLINKLPIELHLPGYQYCGPGTKLSKRLARGDLGINPLDAACKEHDIAYSENPNNIQARNVADRVLAEK
AWQRVTSSDANLREKAAGFAVSNIMKVKSKLGMGLSGKRRKMQKKRKLLALKNVIKSTAKSFIPSNDSHSSIKSALMVAR
KHIKNVGGKTNIKIPRVLPVPKVGGFLPALIPIFAGLSAVGSLAGGAAGITQAINRANAAKQQIEEQKRHNKKIEMLALG
KGLYLKPHKTGYGICLKQRKRKRMQQKRSQRKKTSLT
>Kolobok-2_BF_p2#DNA/Kolobok-T2 6313-5471 [Branchiostoma floridae]
MTSVGADSCVVCCSTRHFEGSRFTTNRPAFHNKPAGAQRSCGDSVGTSVYSSVQGAVWCSMEPGLEEEIAGMSLGPIAYN
FHPRRSDRERSGTGDGSVSVVRPRPRTPVSPPSEPELLESMTVSEWDGVDVETENWRLEQFTWCRCTNCQPMPSVRECVC
CHDLTEAEKKGIGDGILCLVEHEDFHANNINKTVLRSALLARVENLREALGDPILHRTYRMQAYRQCTYWLHERLGTHIR
RVIPSCVVWAIRDAYPEKKREHYRGFLEADEVYDFIYEARR
>Kolobok-1_NV_p2#DNA/Kolobok-T2 [Nematostella vectensis]
MDFIDSLLVMEDDDNDREEENLGLAMEPMDVAGPSTHPQGPTAVGITPAPRPPGEPLPDWCKCGNCREMPQQIENVCCGK
RNCESTKARFGKLCLDVEVLSLGIRSSADIRNDWHDSSARAFRKAGYRNYILDKHGYLGKGRRRVAPSCIVWQIRHHYPT
RTGIYMGFREN
>Polinton1_SM_px#DNA/Maverick 5724-6717 via tfasty with Polinton-3_SP_px, 1 frameshift. [Schmidtea mediterranea]
MAWISKTLVDIIKRPSKMSFYTILPSNSCPLIHPENQASKFMVDLQNPIYLHGNWEVALQDFTLCTINNFERYCHIPNHI
LDENSGMFFKDGLNVSCDFSPFAIKFESIEDAKRMGSDKLNIVVPGTEYLIRFKTFDEKSVTIENIKISVSYINEVEDTF
TFTKDLYIETLEELHKYISFNCLQIFKTIEFLKDEICKFSLNNNICEVTFDKNLANTLELDKQTYRASAFGVRKPKIIKL
HRQMFIYTNIIDPIIVGDSLVPLLKSVWVDKHDQDEVVNINIDNTMYLPVSTSCINNIEINIRDDSGKFIEFSIDTKTHL
TLHFHKLDGQ
>Polinton-1_DEl_px#DNA/Maverick 6530-7057  [Drosophila elegans]
MCYSNELFVTLLSNDSMNVFPDNVKCAFTNIVNIPQDMNEYWEVGITDIYLNNYIYKTTTKERNIAEETEFVSLVNAETF
RYSNVPAESKIPENGLIFIYTDIIKPRSVGCKRPRCLRVMHYNGKERNIQFKNIEYYPLDIWSPNEISIQYGYKVPFETS
AVPIFVTPPFGKLVKQ
>Polinton-1_AMi_6p#DNA/Maverick 8835..9533[Crocodylidae]
MEHAEKMYLVPKHELEQLRAPPPPQENIRTEATRLLDAEMRDILQRPGLAEYDKAKLYAAVLQKYLTYVKQGDLDRGKLT
LFLPEQTPLEAGNPLETPTNPDTVVQEVLDNVHARYRKNAKVLLTKLSQHKDISSWDDQGGFVYKGMLVKGSNMLDLVRG
TLQTHAGTSKRPPKGWDIFMKAMAELNVPSSVMGNAVNRDHLERLKVSASDQETPTAPPKKRKTVSKSHWLSM
>Kolobok-1_DR_tp#DNA/Kolobok-T2 283-4337 (10 introns) [Danio rerio]
MPPREHPCAILGCKAQHKSLHRLPANEQQRLKWLSFIFEDKVPENVPKLLYVCANHFSVDCLENAGQYNSGFASKLFLKT
GSVPTIRDPASLQATTSTKSNKVDVACQTEPFHTSLHSVGTQLSFRTLQAKRRSTSVQTTVSSFELTVPSASSTAFMTST
PLKPSLKRPRLELEEEEEEEEEAEETLTESKIIAQDSDVTFDPAEECTSATEPTDLSIQECPVHNIAKFIVYETCLMELF
SDCPVCQRRCDVKSQRLGTFLSVQQVCPHCEFVRKWNSQPIIGSTPAGNLHLSAAVYLSGASFFVVEKVFAAMKLHIFKY
DSFRRHARLCIEPAIVHKWRNWQSEMLEQLSRRENVIVGGDMRADSPGHSAKYGSYTMMDLATNTVVDLQLVQSNEVGGS
YHMEKEGLKRSLDLLDARGVRLECIITDRHPQIQKYLRDRNVTQFYDVWHIEKGISKKLDKICQIKGCEKLRKWLRSIKN
HIYWTAASSTTGPERVAKWTSILNHVQDKHVHEDPNFPACLHPQRISRDKNKWLSAATMPFYKLEKVLANKRILKDVAKL
SPHHQTSTVEAFHSVILRFAPKNVVFPFLGMLCRLYLAALHYNENAGRPQATSATGKPIYKLAFPKAKKGEYRVREVKTQ
QTFGYVEELLDLIFNQVFVDPSPYVDEVLGIHIPPALSSAYDRPEMEEAISSRVTRFNQ
>Kolobok-1_NVi_tp#DNA/Kolobok-Hydra 709-2463 [Nasonia vitripennis]
MAKRRDVRGRFASTHPDKKYSRGRNKKRPRGFFGSKNNEDDQVEKRPRLSASAKKISTSTVPDAASTKNRLIDVSILYSE
LQDVLCCGVCHGNVHFSESSVQGLAFKIDVVCEQCGQISAINSCKKVGPRSNACEVNRRSIIALRALGHGHAGLSTFCGI
MDLQKPVAQSAYDTIRNQLSEVCQKVAEDSMKAAVQEEMEATGSNQLDVSGDGSWRKKGFSSLQGLASIIGNKTAKVLDV
AIKNSFCKACDNWSGKEDTIPYQEWYEEHEPNCNANHQGSAGKMEVDGIVQMFQRSKEEYGVMYKNYIGDGDSKVYKAVT
EAQPYGSRLTVAKKECIGHVQKRMGTRLRNLKKSLGRQTLSDGKGIGGRGRLTAKVIDRLSSYYGKAIRYHPDSVEDMSN
AIWATFYHQLSTDAKPQHHLCPKGASSWCKWQKAKVHKTLKNFKHKSSIPSAIMEKIKPIYEDLTEPNLLERCVGGFTQN
SNESFNNSVWKLVPKTSFSGLSVLNIGVYTAVTCFNDGRTGFLKIMEQFEVMPGKAACEWVESSNDSRLFHAERKKLAST
KEARVTRRKAREELQDDAYGAGEN
>PIF12_ZM_tp#DNA/IS5 60-818 [Zea mays]
IPKESNSLEFDSINFFVWMPMEFFSMNQIQYLVWIVIYEFTYLEGSNHINLHTTKYTSFHPTIYQAESITGIVIMMHICL
KCPHIIGTHYLLLKCDVQFTQHKLRQQHQHTQHQFNSPNHNRFTLSCFNSHLFLRINGSANKDSYLRASPVKISNKSKNV
SSSNPSISSNVLKISFDVGPFGASSLIASVNLSNFSAIIEVKESLERCLFKLPEVVDEVSSLPVPSPYSYLSHHQLGSLP
LHRLHDLSQTPS
>Kolobok-13_HM_tp#DNA/Kolobok-Hydra 394-2193  [Hydra magnipapillata]
MSTSRNNIKVSNKQNFGRKKKRFFHGNRYTIAAERQQKSNLNIVPASSCASARKLLPLINRNQVVNDKVNKDYFILINFS
ILSDIVEDVRCPDCYSLVTIVDNLSKRMGFAHHLEIKCSLCEWKKVLYSSKQISKFNGNTAQGRKTFEANTRMIIGFREI
GKGYQSMKNFSRCMNLHCLTATPFRKLNIEISKAYDKTAKESMKRATTEMKDNYTDDNKPIMKHVKIDGAWQRRGHTSLN
GFVSAIVGDKCVDYEAMSKFCMGCRIWKNKKASPRYNAWKAQHACHINHKQSSGSMEAAGAVKIFARSIKNNNIIYTHYL
GDGDSSSFKEVIKSDPYKDYKIIPEKLECVAHVQKRMGTRLRNLIKSYKGKPTPLGGKNKLTENVINSMQNFYGLAIRSN
TNNIYAMKKAIWAILFHCTGYSNQEFRHCFCPRTETSWCQYQYDKLHNTSNYKEHINLPLWISNLLKPVFKDLSNEELLL
KCVHGQTQNANESLNALXWSRCPKNIFVCKQTFEMSINSAILHYNDGTEGVKNVLLXFGLSGVVTNSKSYEQNVSRVKSM
EIKSSEKVKNRRKSLRAIKKRYSDKQSQNKTSFYVSGGF
>Kolobok-18_HM_tp#DNA/Kolobok-Hydra 406-2169 [Hydra magnipapillata]
LRRGFLGKKFNCLDKENIEIRLNDNPAVTILTDSNTTTVNNNSVNNESELNLFSTSVSAKKVKPIECSRAFTRMKISGYR
IIDCSILSDIFSALACPQCGECSSLSSSEKMQDKKGLASKLIIKCYNCEYENEFYTSKQCNRAYDINCRTVYAMRSLGQG
HSGIEKFTALMNMPQPMTQNNYDKLAVKIGAVTQKVAEDTMFDAVAELRKHAANDDVFDIGVSCDGTWQKRGFSSLNGVF
SALSMDTGKVLDVEPMCRFCKGCFLKKDLLKTNPTAYAQWKNSHICKNNYKGSASGMESTGAKRVFLRSIDKYKLRYVNY
LGDGDSKSFINVIDTYPGIQVNKLECVGHYQKRVGSRLRNLKKREKGLGGRGCLTDAVIDRLQNFFGVAIRQNTGNLAGM
KASVLATLFHVASSKANNLHFPHCPTGINSWCKFNFDKANNTNTYKPGPGLPMNIIFKIRPIFEDLSKDSELKKCLHGKT
QNANESFNSMIWDRLPKTRYVSFDNLKFGVYDAVANFNIGMKASVLVFEQLNMLPGAFMVKGSNKINNKRIKQSNYKMNE
KNKLRRQLNRTDNNLEKEGITYEPGGF
>Kolobok-17_HM_tp#DNA/Kolobok-Hydra 427-2202  [Hydra magnipapillata]
MANKKRIIRPRKRKFNGNQHNNSNNTNKQFDTNTGSSTSSKKLKNNLEKTLFDXDEFIFFMHFKQMKSCFEKYATCNICG
TKLSMLHDHSRHLGFSLFFQIYCSGCAFKDTFFSSPVVKNNKPGINTSEINVRSVMAFREIGRGRDAMLTFTSIMNMPPP
LSKPSFDCINSKLYDAYKSVAEQSMKNAAMEVRRILKPDSNMNDVIDCGISIDGTWQRRGYSSLNGVVVATSHDNNKVLD
TVTLSKFCKGCQIWEGKKGTLKYEQWKVNHSCQVNHTKSAGAMESAGATEIFCSSVNKYNIRYSKYLGDGDTTSFSTVIA
QKPYGDDLVPIKLECIGHYQKRTGNRLRLKRKELRRVKLSDGKGISGKGRLTDKVINILQNYVGMAIRQNSNSLLEMRNS
VIASLHHCTNFTSEEYRHMFCTKGEKSWCKWQSDRATGHVTYKKKVNLPVAIMEKIKPVFQDLANTDMLAKCLHGMTQNG
NEAFNQLIWNRSPKTIFTSKVVVEMAVYSATITYNDGFAKLSSVFDALNIKSGSYFEIGASKKNSIRLKNMNKKMSDETK
KKRKKLRSVRRNYFGQKLDKETAKDYCAGGF
>Polinton-1_DEu_int#DNA/Maverick 2107-3024 (reverse) [Drosophila eugracilis]
MIKRAIVNELHGPSRKHFQRRRVITKGINDLWQADLVEMGGYSTSNKGYRYLLNVIDTFSKFAWGEALQSKNANDVSQAM
EKILKSGHGTPKNLQTDDGKEFFNTKFKQLMKRYDINHYSTFSTLKASIVERFNRTLKESMWREFSFNGKYKWIDIYKNL
IFDYNNRVHRTIKMSPISVNTTNEKQILQDSYNHIKIYVESKLRNGDHVRISKYKHVFEKGYTPNYTTEIFKIRKVNNTF
PKTYLLEDYKGNPIQGGFYKEELKKTEFPNTFLVEKILKRRGDKVLVKWLGFPMDEASWVNKDEIL
>Polinton-1_TV_int#DNA/Maverick 5677-6900 [Trichomonas vaginalis]
MNYINYIILSRKNQRNKKKVQNAQVLQTINEAQALIYDSLVKPYSARLLNEDQLLEFILQHKLEAGKYIKPLYTAYLKQM
NRIHPELMKGGMKSKIKADKIKPLATPKPPTTVPPPPSVNPSSFTLLYPFQTLKKQKDFKKDFKILNKPIDPKIQPLKEK
FSRPSFAPYPYSYEIDHLEYSKGNVTYLFAININTRYLYCIPVKGKTEQETRRAIQYLLDHERVDNIRGDGDKGFQAAMT
HYFPQINFYFSSSPYTFHNKIVDAVMRTLRDALGVNGQIYWDGNHDSIIQQLVYYYNNTWHRTINMKPVEMKNDISKEWE
YIRKQMERLNDVKREQINSGLMNFKQGDKVLIHLDYGKTDKSMTKRRRRFDTIAEFVRYINGNALVEVDNKLIEIPIYFI
TPLYLNNI
>Polinton-1_TV_atp1#DNA/Maverick 10465-8156 [Trichomonas vaginalis]
MTATNNNSNYIVSDEKVIDSLAEELVVAETKTLNERIGENMIDLHNYLKHDGGRGRKTGMALLVNKISNLTIIDVDINKS
YNDELKETVRKDILSKLSDKDVIVKTASGGLHIYCNTNFFYAVSNRMIKCYSCNDYDIDIMTSMDDSKRSLVVMADSRVR
KNATEPINTYSFIRGSYDSTLTRTVNDILNDLNIKVRVEQKNEEIKTIMNENKDVNIDDKLAQSIVDGICDFEVHNDGGN
MNLEKEVTLFTLFQAINSLPNHLINEAYDNVYNFCNLTENAKSNFEKARSRYAHLMTSPFVLVKILKLYQKEYYDEYVLP
LLRKPKITFDIKLDDSFLITDIRRKAENHQYKNSSEVIEDLSRVIRFVDCGNKYFIQKDYNIHDKMNQISFVLQSNMKES
LKMIKLFKEEGKTITAWDVLLNQLSSLTVKGVCFKSDSPDVFSTFQGYKYNILEKPDYSKIEMFMNFIKEAICDNNDEVY
KYLLGWIASMIQHPGIKNETAIILKGLQGTGKNRFTDIISELLAGYSCKNITEISELTGNFNSVVENKMFLVLNELKNVG
EDRLANFNALKSIITDNEIRINEKNQPRRTAQNVANFIFVTNNVYPVKIEVGDRRYVVLRVNGKFKGQFDYFKNLMDSCT
KEFYDNLLTYFINYDLSSFNVRIIPMTEAKQDLIELSTNPLDVWINTHYDELCAGMTCKNALFCKPSDMKDKNFQMSIKD
KCDRKQRRIDGKQTWCYVLKEEMKGLYKQVEPNDNEDSFTDDEIPVNDAL
>Polinton-1_TV_polb#DNA/Maverick 1791-5255 [Trichomonas vaginalis]
MNKNGTAKMNDNQIRAEGRRLFKRFYNIPDGVNPKTRRSYLNEAIDAYEGFDISSESERLARMLNVNIDFYYCDPQPEDV
DINKVDFPLVESIMIDPEFETVNILLTQSPCGKLHADRITDVEALTGYKVCPFCKEEVYSIRDDPERKNQRRFLKHCEKC
KENNGRLIQDVQLQNTQQPYAPHITKQKIYQWLLAHNLQEYYKPTRYYITFDFETLETKEELQLSECATLNAYLKPFMVS
STVKIKPQSGEVVDRDKTFTRNFCLTSSDSFISDWIEFLFSTCSLVAKSNIEQYEELMNTLNEKQKEAFKELLDEEFNKV
NIIGFNSGKFDLNLILRDLNTAKWKIKSMLGSSSQFKQIIVKKTNVPYELRFIDIRNYIAGGTLDQFTQDFGNNKSRVKS
FFPYQFITWENYEEELYKEEPFTQDSFYSALTQETISDSDYQIYLNDAKNFKNRLEYFIHYCNKDVEIMIDPIDKIIEET
FVYKIDMLHNLSLSSNASMIRYALAYKDFNPNEKYPEEEIESSFELTKKYWKYKIESYKKQDEKAERDTKNNVSMDDFQY
YHDLILSSKCKMCGKAFTYANKPTLDRIDNEKPHTKENCQLMCCYCNVVKSNKDEDVQRLRINLRNYALKNNLPMTLDSV
EAYHILRNGITGGLSNVQHRVNLKGITHINKLSYNPETKTVSNEDTTNIMTHFVGVDFNSLYPSSFSSNPHDFIQYTDHK
MYMPGRLNGVIICDTATKKAKALGIIKKKNTLFVAEVKGHIDEKYINDYINFLPIIRNLDIITDEKTIGSFMYNYMKSNN
LPVDQKQRKLTQLASTHNQYQPFSSYYLWYLIDRFHFIIDDIQSILTFTKNTCFNEFANEFMNERQKAELEGNKGKSLFC
KISLNGSYGYDAMNTQNYAKTKIMNAQKARVACMSNKFKNIREIGEDTYQVMLKDRFYRCDTCLQEAFFTLDNAKYWYLV
FIYDFMYKCMNVNRFHFIEGDTDSSYWAIAGDPNLPNTQAFQAIVTDKQFYDKNIFKFAPFDFFCFDEKFKPKLKNKAEE
KAHEKKLLGLAIEKQGDNMVALCPKCYTSFNGSIDGSDFKKIAQKMKGVSLRQNKQLTPKNYLDIINDKVIFDGQNINLQ
LKNGSMTRLTIGKTALTGAHTKAVCCENGCCMPFI
>Polinton-2_AMi_3p#DNA/Maverick 3585..5195[Crocodylidae]
MIIFQVKRGDKEETFGSVDTHNALKDHDYFSREKRRLWGVAGTRRALKDHDYCATKRAHVVRRGGGLYGPDTRRGMHHKR
GGPDKPENKWLAGQKVRACLKMRVEKAKRILRKNKRTPTENPTIAPNLPKPVEPESRSDECDVEDPLEGPSKNPTPPEPV
VSESCVGENELEDPLEGPSKTPAPPGSVESDSENGESDLEDASEGSLNVDPPEPVEDVMPDVEMVWVRRREWPIARFGAQ
RYIEEFRFRNLELVPVHVAFEAIRRGVERIVENLHCLFTPADYAQLRIEANGMHDCLYSPTINLNDMSTDLFLEWISKLL
QSQREILFDSTFRLIVVVVRGVGGGAQRVISSIPYSQIIAKKRRYLIDLNTFDTKLCFAGSLLALTTLRGATDAELLHGA
SQLHEKLGWSAQKQVMLKDVALFEDLVKVNIHIVMHKEKTGWSFFKTHSMPRYPNTCFLMLHDEHYYGVLDVKKVFGARN
YCNLCQALYSHSHTCRFWCRLCLTPDCADNVGEAQRCPNCKLVCRSSGCLEXQSSGF
>Polinton-1_XT_int#DNA/Maverick 419-1507 [Xenopus (silurana) tropicalis]
MPRRRNKKHILQRQYFNPRAPGSYGGIENLYREVKKHRLKRKDVKEWLNQQDVYALHKPVRKNFKRNKVVVSDIDSQWQA
DLVSMIDLSKENDGIKYILTVIDVLSKYAWCCGLRNKTGTAVATAFQRIFEEDHRTPIKIQTDRGKEFLNKEVKQLFDKY
KIRHFVSSDTVKCSLVERFNRTLKTKMWRYLTKRNTFRYIDILPNLVYSYNHTYHSSIRCRPADVTKQNSLKIWKNLYYE
YFSSKKIKPKFKIGDDVRISKYKGTFSKGYEQSYTDEIFTIYDINTRGLRPLYKLKDLADDPIDGSFYAEEIQKVPPDQN
RIYRIEKIIKRKNIDGINLFFVKWMGYPPKFNCWIEENQLTDL
>Polinton-1_TC_py#DNA/Maverick 4239-5549 [Tribolium castaneum]
MSFLHPCSCECAKSELDLFALPPTQTSIESGQWVHYKTVSSISENSPLEFVVPGGEDYIDLSQTLLSLCIKISKEDGSNY
VAEDNIAPVNNILHSMFSQVDVYLNQKLISPPNNTYPYKCYLETLLNYDSGAKNSHLTCGLWYTDTAGKMNVIGNENIGY
AERFKHTSLSKEIDLIGHLNCDIFNQEKFLINGVEIRLKFARSRDSFALMSSNNLNGKIQITDATLMVRRNRINPSVLLA
HAKALELSTAKYPITRTELKVLTIPQGVQGKSLDNVYLGQLPKRCAVCFVTNKAFNGDYTMNPFNFENFGLNYLSLYVDG
NQIPSKPLQPVFVGGNRKFVSMYHTLFSGTGIHYLNTGNGISRDNYADGYSIAVFDLTPDLSSHNGFSWNLIKNGSLRIE
VGFTRALTETVNCLVYGEFDSVLEIDKKRNVIVDYSN
>Polinton-1_DR_pz#DNA/Maverick 8031-7264 [Danio rerio]
MEYAEKMYLVPQNQLDKIQSTSARENIQQVVENDLDTAIRNILLRTDLDQREKVKLYSNILTRYLTIVKLGDRESSVLTL
SLPTPEDDHKVNSDETHAEDKSKDDVTSEVLKNVPTKRVKNSKYILDKMSKAKDLSSWSESGEFVFKGKTIPGSHMLDLI
NNVTAPQQVRDDRRPKGWTEFLQACAELNIPFSTVPNQQVRSKIISLKNNPIDDDQEILSTKKTTRKKRKNQQRTQLLDE
DMFVSPTRDKSRWMHF
>Polinton-1_DEu_p1#DNA/Maverick 6014-6865 (reverse) [Drosophila eugracilis]
MGKRFYNRFISVFNCKRGGGLVNNLINTLPFEAHIPGYKFCGPGTQLEKRLKRGDQGINKLDEACKEHDIAYSHKKDLHE
RHIADSILIDKAWSRVKAPDSTLGEKAAAYLVTNIMKAKKKFGMGISKTKKKCKGKTTRKKVKMTNLSTVINAATRTLKK
QKPLDIMSAIKIARKSVQSTMGSKKNVKVPRIINVPKTGGFLPIVPILTALSALGSLASGSAAIAKTINNARMAKEDMEE
KKRHNRKIESVAVGEGLYLKPYRTGYGFYLKPYSKGYGIKKRKN
>Polinton-1_GI_int#DNA/Maverick 5969-7010 [Glomus intraradices]
MYLPLPVPQIFIDPTFNKQIEQNYILQQIYYHPCGYYRTPKKLWAKVQAEGHDFNISDITEWLHKQAIWQIHSPIPKYVP
QVSFNKITRPNMYHQADILYMPYDTVDRKLYKYCLNIVDVASRYKASVPLEDRSSARVAKAFKKIYSKADCPLIWPRVLQ
VDGGSEFKDEVIRLMDEKGVRIRVGTTHKSQAIVERYNRTLAERLFKIQDAKELLTEGVNTAWVKNLSDIVNELNNSNTR
LLGMSPVEAIQKDQVYALPSKIRKDRPVGAEEIRLPAGSLVKYLLDNSDYQGRRRATDPIWSTKVYTIESSTVVDGQPVI
YRLSDGPKKIFTREELLVVPSNTMLPPX
>Polinton-1_NVi_p1#DNA/Maverick 10259-11062 [Nasonia vitripennis]
MIVYKRRGRGLVNRLINNLPIELHLPGYQYCGPGTKLTKRLARGDPGINPLDVACKEHDIVYSQNRENIEARNAADRVLA
HKAWQRVVSKDSGVKEKAAAFAVTSAMKLKSKFGMGVPFKKIVKAASKSIVPSKCARKVILSALKGARKAVKEAGGKRNI
GIPRILPVPSKVGGFLPFLIPIFAGLSATGAIAGGAAGIAKAVNDAKSAKQALEESQRHNRKMEDIALGKGLYLKPHKTG
LGLRLKPGNELRKKKDCRRKITSESSH
>Polinton-1_GI_polb#DNA/Maverick 10382-7011 [Glomus intraradices]
MPILPSTDINGTFNFALARIMQKVEDYVNYGSGWEFYRVEKIFIEISQFQPPTGAGHIPLPKDLATKKGVVNPANDDDKC
FQWEILAALHPVEKNAERISKYKEYVNELNFEGIEFPVQADEVILRRFERQNPTIALCICEWRDHRLCPIYVTDRDDAEG
RKIIDLVLISNGEKQHYCWIKNMSRLVNKRTKDGHATFVCRWCISHFTHQQEIHDKHVAICQGLKKTPQANRMPSVKKGN
DIYEFKNWKRRMQVPYYFVADFEALVMDIPPTDEDKDKKTKKVQEQIPCSYSYIKVRYDGVSESQKIFTGENAAQKFVIE
MLNEAEAIRNEFRNPMEMMPLTTEMHIPVIFHNLSGYDGHIIMQGIGAMECEDDIDPIPYNMEKYMAFKLGSLRFIDSLQ
FMKSSLDKLASNLGAEKCRAQECSNPQHLWRIDAGRCFAHPENFKITSDKEYEYAQYVWEKAGCKTMQDYHDIYLKTDVL
LLADIFQNFRKMALKKYGLDPLWYYSTPGFAWDALFLMTGQRLDLITDQDMYMMVEQGLRGGISMVSKRYARANNPGMGE
GKWTTDKPKSSILYLDANNLYGWAMLQYLPTGNFHWIKEENELFNIQRQIESNEIPDDSSEGYILKVKLEYPQALHSQHT
DYPLAPERMKVKKEWLSKKQQEIIARSGQRYTPTDKLIPNLFDKDEYVVHYRNLQYYVSQGLVIKKVYEAIKFEQAPWMK
PYIEFNTAERAKAKNDFEKDFYKLMNNSVFGKTMENLRKRVRVSVVQPQTHPKKYKKLTSDPAFKGRKIFSENLVAIHRR
KVEVMLNRPTYVGMSVLDLSKLCMYQFYYDTLKVRYGEKIQLCYTDTDSLLIQIQTEDINADLIDMADQFDFSDYPKDHP
VRKALGDKTDINMKIPGKFKDECNGAVIAEFIGLRPKMYSILKVGDETTNPKHGIRKAKGVPSKVVKKEFHHERYNKALF
DPKHNDTVTFRAIRSDRHTINVIEMSKVGLSPMDDKNGLHKIISQCMHMETIGYHNLKINIIYE
>50926620_Osa#DNA/MuLE-MuDR gi|50926620|ref|XP_473257.1| OSJNBa0074L08.5 [Oryza sativa]
MKFTEPVKVGSMEKKGREAIQEGETIRQQSEESKNDAMQIEGSKRNINMAPGRLAYARSPNIYNLQEGEGSSSKMPHLGC
RKIQHVGKNFNSPELSNTIGTIASEVVNYGGQMLYDQFTLLNLDPRQEGQLSYTNLIHQIIHSPTVTIQQQTNSMILTTS
RFSPELEEQQDMTYEQHISTTHWSYEEFDQIYNNKYITPFAENTTARIEELYQSKNSHFTTKEGTSNMLQQDSQINTITA
IEQVEQHVGQAETTSETKATSAEDNDTINEEDINNYLANEEDSQDNTPVVIDKKHIPCIGKKFRTHEEARSFFNFYAYQV
GFSVVITHHYKSTSKKRFGQITKYTYQCYRYGKNDDGQKKKKKKTQQQRNTQVIDRTDCKCMLTVRLDGDVWRILSMNLN
HNHTLTPNREAKFLRSHKHMTDEEKKLIRTLKQCNIPTRNMISILSFLRGGIAALPYTGKDVSNVGTAINSETRNTDMNQ
VMEYLRQKEAKDPGYYYKLTLDENNKVKSMFWTDGRSTQLYEQYGEFVSFDTTYKTNRYNMPFAPIVGVTGHGNICIFAC
AFLGDETTETFKWVFETFLTAMGGKHPETIITDQDLAMRAAIRQVFPNSKHRNCLFHILKKCRERSGNTFSDKRRKDLYA
EFNDIVHNSLTRAEFESLWLQMIAQYNLKNIKYLEIMWRTRKNFIPVYSKTDFCPFIHSTALSEGTNARFKRGVGPTHSV
MTFLLEYETINDIIFDTEYGKDYESRNKKPKSFWSNYMIEEQAADLYNHGIFDKFQDELKGTLNLEVAAIQQGKAYEVYA
APNLKQQEFRPRRYVVMTDLPQENFVCICAKFSKDGILCSHVLKVMLYLKMSKIPDKYIIERWRKKERKLTVSMQLATND
ENSSVLRFNVLSRRICNMASKASKSKETCEYLLGEIDNLDSNLDLIIEDAAQNQASIDESNTVENTSEDQAEKETTNEQE
DIQDPDIANTKGKKSARTKGMVEKIKEQPKKHCTRCGRTSHTIENCPLMQIARSTKKIQKSTTTRTIEKQAMPARKKKHE
ENDKGSKLPKDQGSTKKNKSN
>50545171_Yli#DNA/MuLE-MuDR gi|50545171|ref|XP_500123.1| hypothetical protein [Yarrowia lipolytica]
MVDATYITGFNRNKYCLVNISGVCALNKSFPFACCFVAEETQVSYKWVFTQLRDMFDNYRIPYPKVVVTDGGKQVISASE
SVFLNVPVGISSWHCNEKIREHANRYFKGKRKVDKVMKAWNDFISAETEEGMETCKAYFCNNFSVDLTKVNRKTKKKTTI
NFIEYVDAQWFPDATFRRLARFYTDQNPHFYHNMASRVESMHHQYKLVLGSKKKDLFETTKLILEKIKLIYEFNNLEMAK
ALREVSLHQRCVSAGVFNDVFYKISPFALQRILEIRATQEDGDYLDCKCSNVRSVGIPCRHTIRQVKELRPSGGLCFRDF
SPHRRNMFTDVFGMDCKMMGESAEEVEAFHEGMTTGEVGSSGLHLYAQEWQRLLEASKAHGVAVLDAPYEEPVHGNLAKL
QSEKHLNRKPYLAARKKGARSQRAGESVKAMDLEPPAMCQTASAATHLSSVLPSIWPSCKNIRRTPR
>51892267_Sth#DNA/MuLE-MuDR gi|51892267|ref|YP_074958.1| transposase [Symbiobacterium thermophilum IAM 14863]
MTTFRIALEELLRKTGVDDFDFLREGLRVLAQGLMELEVSQRIGADRYERSAERSTYRNGYRERQWDTRVGTIDLQIPKL
RKGSYMPSFLEPRRRAEKALVAVVLEAYVNGVSTRKVDDLVQALGMTGVSKSQVSRLCAELDEVVQAFRNRPLESRYPYV
WLDAKYVKVRENGRVCTMALVVAVGVREDGDREVLGLDVGPSEDGAFWTAFLRQLVTRGLKGVLLAISDSHVGLQEAIRT
VLSGASWQRSRVHFMRNLLGYVPKHWQSMVAAAVRTIFAQPDQQAARRQLAVVADNLRPQFPRAAQLLEEAEDDILAYMA
FPTEHWRQLHSTNPLERLNREIGRRTDVVGIFPNREAFIRLAGAVLIEQQDEWTAAPRRYFSQASMAKLYTSNQSVSGTD
FLALSAD
>Arnold2_tp#DNA/MuLE-MuDR GenScan prediction, matching other MuDRs. 4 exons (1058-1402, 1484-1534, 1858-3431, 3550-3743) ( Arnold1_tp, Arnold3_tp and Arnold4_tp almost identical. [Arabidopsis]
MLELYSVCGLWKLTNNMTWEFELDIELGASLVLIDEHITYHALVDILVEDFQIDSSTNSLKLSYKLVSTSTTIQSHPLYT
RNDRQLATFMHKFSQSGGLLQLCLTIEQISVTVEQAETTSNPFVSHSVPNAQSRLTSRIIEACVSETSSILDQQYSSYAF
STGLSDADSLFIGKNFKDKDEMVFTLRMFAVKHNFEFHTVKSDLTRYVLHCIDENCSWRLRATRAGGSESYVIRKYVSHH
SCDSSLRNVSHRQASARTLGRLISNHFEGGKLPLRPKQLIEIFRKDHGVGINYSKAWRVQEHAAELARGLPDDSFEVLPR
WFHRVQVTNPGSITFFKKDSANKFKYAFLAFGASIRGYKLMRKVISIDGAHLTSKFKGTLLGASAQDRNFNLYPIAFAIV
DSENDASWDWFLKCLLNIIPDENDLVFVSERAASIASGLSGNYPLAHHGLCTFHLQKNLETHFRGSSLIPVYYAASRVYT
KTEFDSLFWEITNSDKKLAQYLWEVHVRKWSRAYSPSNRYNIMTSNLAESVNALLKQNREYPIVCLFESIRSIMTRWFNE
RREESSQHPSAVTINVGKKMKASYDTSTRWLEVCQVNQEEFEVKGDTKTHLVNLDKRTCTCCMFDIDKFPCAHGIASANH
INLNENMFVDEFHSTYRWRQAYSESIHPNGDMEYWEIPETISEVICLPPSTRVPSGRRKKKRIPSVWEHGRSQPKPKLHK
C
>54261828_Stu#DNA/MuLE-MuDR gi|54261828|gb|AAV31178.1| putative transposase [Solanum tuberosum]
MAEDGLLQMEGIIYEYSSLYSGLVSAITSQLMIDANIHNIEIKYIVSDRCPPVSIHNDVGVRVFLDQKKSNVDFFTKYPL
CITLKNIAIDNQDSIVVVDRRHSDVSRTLTNFDLYSSNSIRLIGVNLDGVVDENTDEGNGVISDLSNLFIAEKQIYNDKE
TLMEVMRHYGVVEKFKFLVTRSSSSCYYLKCPADNCSWMMNSSCLNQSKLFKIRKYCVEHTCSVRDRVNARRQGITDVVV
VLIMDKFIDPSTVYTPKDIAEEVLKVHDVALTYMQAWRAKQKAIKLVRGDPAESYAKLPALRGAYGGTMLTASTIDPGGH
ILPLAYAIVDSENDASWTWFFEQFREVYGERENMCFMSNRNESIWKGTARVYPGLEHFACIWHLCCNVLKNFHRNTEDLK
KLFFTMAKAYAIQQFEAIMQRIDHIDPRIRDYLYDIGYSKWSRAYSKCKRTWTMTSNVAESLNNVNRIARMLPVISLLEF
MRVTVQRWIHKHNEEPAKTRSELTKKYDLMLQKSIALSSSMRVIPSTVDMHVVVDGPKRLKNFQDTYAIPVEPLPCESIW
DIPSYISEPKLMPPGPKRAAGRPQLER
>48852982_Fac#DNA/MuLE-MuDR gi|48852982|ref|ZP_00307163.1| COG3328: Transposase and inactivated derivatives [Ferroplasma acidarmanus]
MENTDINISALLNVDIDKILKQTIKEKIEKLMEIELNAYLEENPGIKNGKYKRDLKTKYGEIKQLNVPRDRDSNFHTQVI
EPYNRSIGMEDLIVSMYSNGISTRRIAGIMEDILGNKYSKSTISRITDLTIEEVYKFINRPLDKRYIAVFLDGLFFYLRR
GNVDKEPVIFALGIKETGEYEVLGFYLTVKESHNTYKDVLEDLYSRGLKEPLLIVADGIKNLDEEVMEIYPRSEFQLCTI
HYARGLKSNVREKDIEEITVDAT
>46199734_Tth#DNA/MuLE-MuDR gi|46199734|ref|YP_005401.1| transposase [Thermus thermophilus HB27]
MHDFSIDRSWLDAVVREAVKQALETVMELEREVFLAEWGGKKNGYYERGLVTKHGPVRLRVPRERDGRFHTALFAPYRRR
MEDLEAFALAMYAAGISTRKVGEVLGYLLGGTYSASTISRIAEGVLPRLEAFRKRPLKPRYAFVYLDALFVKVFQENEGV
ATEAAYLALGITEEGYREVLGFWLLPTESSTGWGDLLLELKERGLEEVLLFITDELPGVETAIKRVYPKAHWQLCTVHKL
RSTLRRVRRKDQDAVLRDLSSIVRASDRNEALKALNSFRGRWADKYPQVVASWIQHSAALLRFLDYPKALQPVIKSANLL
ERMIKEVKRTTKTRDNTFPTPDAVLKVIYFVAERYEAQFQTRKLQGFQQAEDEIRAIFNLRYPQA
>39584010_Cbr#DNA/MuLE-MuDR gi|39584010|emb|CAE66416.1| Hypothetical protein CBG11684  [Caenorhabditis briggsae]
MANHGRPREVINAVRKKYPPLVSIATGSYNAKRKIIYKAKGVKDDDTMEMDRGGDVAPQFARTLNGERFLVKDSTIQTAT
GASRMVVFASDFGLDLLADSRTVFCDGTFDAVPSPFTQLFTIHAYTSKSLSKMRSDHSFREHVSKDVYFTCCNHGAEKPS
SCTFTKNLRVGCNKF
>47572415_Rge#DNA/MuLE-MuDR gi|47572415|ref|ZP_00242459.1| COG3328: Transposase and inactivated derivatives [Rubrivivax gelatinosus PM1]
MAQGSGQALLPMLELLENAQASVDELMNEAARAVVEELLLASASKIAGAKHRGKAGGPVQWHGAQDGFIQLAERKLRLTR
PRLRSSGRAGKEVHVPAYDKLRDDARMGARVRDIVVKGVSMRKYEAVLPEVAGTVGVSKSAVSRRFIEASAAQLAALNER
ALADAALLAIYIDGIIVDGTHVLAALGVDEHGRKAMLGLSAGSSENAQVVKALLTGLRERGLAVDRDYLFVIDGGKALRS
AIEEVFGNHAKVQRCRTHKLRNVLEALPTQMRAQTKSVMNAAYKLDAKRGMDKIRQQAKWLQAEHADAAASMLEGLEEVF
TVNTLGLPPSLMRCLCTTNIIENPNGIVRTTTNRVKRWRDQAMALRWVAAGFLEAEKSFRRIIGVKDLWVLAVALARDPP
RSARRAA
>48851728_Fac#DNA/MuLE-MuDR gi|48851728|ref|ZP_00305927.1| COG3328: Transposase and inactivated derivatives [Ferroplasma acidarmanus]
MKKVQDQLKEVKEKIKSYGLNRENMRDLKKWILNDLMNEEAEEQINASRYERNSNRKDYRNGYKQRSLLTTDGKVILDKP
QFRETSFHTAVFDNYSRVEKSVESIILESYLSGVSTRSVNKVIKSLGIEVSPSYVSSLSSRLDKTVNEFLERKIDGEYKF
IYIDGTYLKIRNNGRYRNKAIYICVGINSDGYREVLGARIYDSETEIEWELFFDDLKDRGLNGVEMVISDGNKGIREAVK
QSFPGSSWQYCHVHFMRNLRKSTGKQQWKFLSLLIKQALDNPDILPLLQDKLFDRGLDKCSTMFDKYYDSLYNYRSFNTN
IQGLRRLRVSNTIERLNAEIKRRTKKIGAFPSDDSAMRLAGSIMMDINEEYVTGRKYINMEEINSQ
>48824616_Efa#DNA/MuLE-MuDR gi|48824616|ref|ZP_00285968.1| COG3328: Transposase and inactivated derivatives [Enterococcus faecium]
MNYFTTSLMKNLFSNDNNLPAFEQAVTELFRSELEKSLNEILAYELTDFLDYEPYARTNNENSRNGSYQRKFDTKYGTIT
LNIPRDRMGEFFTSLLPKYRRRDLFTETTILDLFEEGMSHSEICSMIQKLCGARYSKQTISNITDKALECVDSFKNRILN
KEYAVVYLDGTSMPLRRDTVSREMVHIALGITVEGTKEILGYMIAPNESAEIWEELLKDLKSRGVERISLFCTDGLSGME
NVIQDIFPGSKIQRCLVHIQRNICAKVRVSDRKEVANEFKEVYRSKSKEEALTSLKKFIDRWKHKYPSMVKSLSNNDYLF
TFYDYPESVRHTIYSTNLIEGNNKQLKRSFKKKEQFPTEKSEEKYLVIQFNRYNEKNMNHVHRGFGQTTREDWFKS
>CeMuDR1#DNA/MuLE-MuDR multiple exons; from RepBase [Caenorhabditis elegans]
MTGKRSSTERGKSFSEFSRLYSVVSNFSYVAADEITPDILQKLEHQSRLTVRVPLKGNDASPFDGHIWFKSATQETTKHA
PRYENAKIFGEIIKSRRCTDFENPFFTRHLHNLHHNANGDVVMCKTGPKAITTQDMIEDAKRTHGDRLSYTVAIKIFLKS
CPEESRVTEWRDEIEDICQMAPQARKVAIEELLAKTDDGVFFPSRLHVDTTYNLGDAYVTTLLGETNTFISTVLVQALDV
RVIRCDLHIYSLMIHKFKRPKADKAKPFVFGVQEKCTKTYGSGKFTTSSLFKIVTLLFRYDNKKSMFFECASAKAKLMAG
HLRQFSTNNISENFNRAIKVTIGKQLTLDKLIVKLNERCEVGHSEYVIVSVDLQTMSMDEKLQWFADAGITGGMLPALDV
PYQLLSEVNLERSRQEAEPSGEIDIYQRDTDIFNLRDDSGTGPKYASVELTQGMLICNKCNSEKLDFICRHVLTVYKDDP
KSNGQDDSANSRTTLTESENEVNFDNETTSLFSPQSTFTPIFSSTRLEERQLVERELKDNHAEEIQLDADKADESQLNDS
RRSARNRLLRFDEIIDLWDIELYTNTTESLTFRATLGTEN
>MuDR-1_MLP#DNA/MuLE-MuDR 286-2336 via genewise with MuDR-5_Mad, 2 introns (975:1042, 1755:1832) [Melampsora larici-populina]
MNIDELLVSYSSLQEAEDALRNYTKTLGYWLKITRTCYDRHKRAKKRVFVCAHGGTPQPVESRVRSTSSQQLGCKWSATV
RREQFTHRWNIELTNDQHINHEPSKTLAEIPAARKLSPEQLTTVLNMANAGVPTRLILRTLKASDPSNLSTSQDIYNVIK
KQRLINLNGRTPLEALIDNLKENDVFHTFELDSHHRLLRFFVAPKASIKSAAEFWTSDVLLMDSTYKTNRFHMPLLHVIG
VSPTHQSISLCFGLMRQETEEDYRWILEQMKLCYGPKLAKLQAVVTDRELALMNALTKALPDAKNLLCKWHIEKNVQVNV
KNKLSDDEWKKVQNHWMNICSSLSADEFDANLEALRTMIDEPTFNYIKTTWVTHKEKFVTARTKDIKHFGHTVTSRAEGG
HAGIKGWVWQSTGDLATVYSKLEILCQQQYDKISQKIEYDQTHTLSRLRPRIWSDVNQKISHYALLETYKQYQKALSLDN
TNTCTYVLSGSQGLPCAHFLKHLISSSRKLAPTHFDSHWHLDQGFVVPIMHEQVPNLEALLDSIQTRHGNLPAHQQSVLC
NQLSRILINPPPTVGDPDPIRSRGRPVGSSNKSKRDLSQYEHQDAEHEGRRCSQCHGTGHNKRTCRDPAQSTNFA
>MuDR8x_AP#DNA/MuLE-MuDR 548-1509 via tfasty with MuDR4x_AP, 1 frameshift and 1 stopcodon. [Acyrthosiphon pisum]
MFSEKGETLKVVNDFKFGxHKNYSNGDIRWKCTNKNYRAFLRMDTQDKLKVSVSNLIHIHEKLELKILNRQKFNNSLKRK
AITDVSERPSKLFHRLLKEENVSTLTLTDVTYYIKYNMHYARRTSCPKLPKTISDVHSILNSIEMIRGCRFHLGQSWWRK
IQELGLASDYIQNNEIGKYLALTFGLSFLEPQEVGDFFSFEMSAIQPDEHKITEFANYLVDTYIGENSIFPPDLWAEKSS
SSQKTTNACESFHSKFNKFFDSPHPNIYTFLEVLKNMQTDTTILIRSSLEKRRVPRKPIRERIQYIENKIMKLQSKIMLT
Y
>MuDR-1x_AP#DNA/MuLE-MuDR 628-3060 via tfasty with 17544214_Cel, 6 stopcodons   [Acyrthosiphon pisum]
MSENQEFICTECGKKFKFSKTLRTHLKKAHPLIDVYQIAPTKKLKNNELYIYTCDLCDKSYCHKRNLDEHKKVAHCEKKE
TVVALVNCSMCSFTTLCTSLMADHYSSVHNIVMQSNKFNFNSLDDFKTWKHDIEQKTNAYYVKNCGLAKNFNENYIYIYY
KCHSNGYFSSKSTGIRHIKSQGSNKINGYCPASMNVILSECTKQCTVTFIDTHVGHLNDLGNLPLDKVTKDIIASKISEH
IPFEHILDEVRDNISNNVLERTHLLTKKDLYNIEASYNLNNESVLHKNDALSVESWVQTVRSDDRFSLVYYKPQDNIDPL
FPNLKKEDFVLIIMNNYQKSMLEKFGNDVICIDGMNSYNFNLTTVLILDDMREGFPCAFMISNRVDEGVLKILFSQIRAL
TGLIKPKVFMSDMAECFFNAWLVEMKQPKFRIYCTWHVDRAWSKNLTKVKLKEKQAEVYKIIRTLLHEQDAKAFENIFES
AINQMSADEQTCEFANYFVSQYGNYVQSWAYCHRIHAGVNTNMHIERMHCTLKHIYLQGKKVKRLDKSLYALMKFIRDRS
IDRLIVIHKGKITSKIKELRKRHKHSLEMSHEMVMKATEDSWDIISKKYSEMYTVNRLKISCDCQIQCQDCLFCIHCYTS
SCIDSAIKWNMCKHIHLVCQFQYSISNQKNNGMLTNCLVVNNNLNNMPNTDGEHNNETSNILSQLNNSAITSQLSLELEK
RKLQESFNKVLNEISTIEELNVLKKLFYLxYQHxQQxEIIQIHQPxKEKLLRHHQQIKKSYHNAVYTRPRKQGKYxKRYx
KHQAEQNKIIS
>MuDR-2_PGr#DNA/MuLE-MuDR 1783-5405 via genewise with MuDR-5_Mad, 2 introns (2508:2601, 4051:4144) [Puccinia graminis]
MPQDIANGPAVVSPQATPAAASPTVFTQAHGQIPASPAVPSGQAPPDEVIQSSGNPLDGIDPALLQLTQDFCASQNSQGP
XHEDIZEEEKAEKTVNEIYEELSKDVLDEILEEDSDEDEAAIAEILDEQLKSLNPVQETQDLREATGEVAPGPSTGNANQ
EGEGEDPVNDRTDFVTNFNPDNYRICPKTNCRLYDFPNPPAALYADPEFMIDDVKRFALHNGYAIVLRRTVEGKSKLFKC
DRGGHPDQNKRPGETHGKARSTRLIRCPWEATAYFHKKGVNQWDFRVRTGAHNHEPSESMSAHTTNRRLTPRLYEEMKAL
GEAGLRPSEILRSLKKTHPNEIILATVSTIYTARKKARQETLQGISPIVHLNKTLANTNFTTATKVDQEGNLKALFFCHS
DSLKLLKAYHHIILLDCTYKTNKYRMPLLHVSGITGSNKTFSVAFCFMAEETEPFYDWALQSLLTIFQSNEIPLPPVVIT
DREQALMNSLATSFPNAHRMLCVWHIQKNLLAKGAKLIATDEQRKDMLQYWMNIVKISTRSDFQASFSRWAHKYGPDFEK
YASSTWLPVAEHYSNAWTCTVTHFNNRTTSRMESAHAFIKSHLLGPQQTFASAVQLISNAIEEQYHQITSIHFQQKITTL
RYLGSIFRPCLGKITNYALSQAFNNLTAGKKLGENAHCNQRYVLRMGIPCKHQLLEISRSGGMVSPEDFHLQWHMNVCFH
ISSHVFPFCSSSHLFPFGSDMNPSSGLKRDPSPSARATQNDNPMIEQITDRLRSMNPAQQAIQIAAINQLLEGSGAVVDV
QLPTEAQKTRGRPKGATNKPRTTKRELSEFEHVEKKRKKEESEAVKAKKQKLNNIKAXMKAFRKADQKALQKEEDKALEE
EEEXEASEARKNSPEPRKRILPPRNARVKAPPPANLDEVLTPTTDKSETLPTKTGPAQKKKIRPIKTASLPAKVQTPPKD
QPAMAPPEPCDENEPDDADKSSYRQYLPPIMKDSVKSILNPRSDGHCGYRAVAWCLGRDQGDYMRIREGLITEITSRREW
YVKKQIFHRIDKMLDSLKVDTPEPCSVDKWMSMPSFGEAMANAFETAVFFFSLHGSLSFLPYFCPPNNNPPICIAHVPNH
FVALEMFDPVYFPAPQLMKDWKEDAVPEALPWEEKYSACHVLTVGRKILFPGTTHY
>MuDR-2_Mad#DNA/MuLE-MuDR 501-2732 [Malus x domestica]
MLIFFCTIPFSILQIRLKMIDSEEANNINNDDSNEFDCTPRCGMEFDSQEAAYNLYNAYGRKVGFSIRKERHYKNKKTNE
VTSRIFACSKEGFRLQDKRDYKIKKPRAETRTGCHAKMVIKLNRSNGRFFVHEFEEQHNHALQKPECAHMLPSQRKISDS
QAAELDLAEESGIPLRESYELMAKHVGGRESLGYTRVDQKNYLLSRRQRKMVYGEAGSLLRYFQGKTVENPSFFYAVQLD
NEEQITNIFWADAKMISDYGHFGDVVSFDTTYKTNRAGRPFAVFSGLNHHREIVVFGAALMYDETAPSFIWLFETFLVAM
SNKAPKTIFTDQDAAMMNAIPHVMPDTYHRLCLWHMMQNALKNVNCVFKGNSGVREVLKKFIDEYEDEDEFLVAWDEMLV
KHNVQGKALEWLKGIKKLRKKWAKAYVKMAWSAGMTTTGISESFNGRLKEYLQSDYNVVQFFMHFERVLDDQRYKEYQAE
YNLCYKNAQVKVPAMMVKQAGDTYTKAIFEEFQEQYGESLDLRIKSTVDDGEVVVYTVFPPYGAFMERHVRRERDSNIIW
CSCRLFEIKGILCSHAIKILREVMDTLEIPSQYILKRWTKKARAESIQDMHGKEIQVDPRLQQSSRFRSLCHAFTQISSR
AAESDETYEIALSCAHKLGKLTEDKLSLQINGKTEDEGEDSAPIMALNHSNDVPNLNNATVVQAKGLKKRETCRGRRRLK
SCLEKAIAKRKRSSNSHLSKVKF
>MuDR5x_SM#DNA/MuLE-MuDR 179-1489 via tfasty with MuDR2x_SM, 2 frameshifts. [Schmidtea mediterranea]
MKFSTTQKGNRVLLYQGFEYTKYRENANGVVTRRFRIYFSAKCKAFLKMHNENIIGDAPQHCHDSNPQKAQANFLKASRN
IMGNVLSKVNMDILEHLPKQSSLSRSLFQHKETSHMPNPTTTNFLIPNKYADLILHDTGADDIERILAIGNLDMLAELEK
DVIYGDGTFDKAPTMFYQLYTWHAKIGNSYPPCIYFLLQRKNTDTYNRMFAILQQLLPNIMPQKILLDFEKACMSAAEFA
FPQAEIKGCYFHLCQSVIRKINSVGLKTVYESDIDLKLKLKSLPALSFVPITDVRTVFDELAATFPDEDNYNEILSYFYS
TYIEGVAGRSPLFPIRIWNHFDAAAERCPKTTNCCEGFHNALNSLFHCSHPSIWNLXDGLRRDIACQRLILANFRTGRPE
ITKRKYSALCNQVARVVQDYENREDKLKFLRRMANLQ
>ISEf1_Efa#DNA/MuLE-MuDR ISEf1 gi|29375002|ref|NP_814155.1| ISEf1, transposase [Enterococcus faecalis V583]
MNDFTTEIVQTLVTKGDLNELFRSHLEKAINTLLRTELTAFLDYEKYDRTGFNSGNSRNGSYFRSIKTEYGELTLEIPRD
RNGEFKQQTLPAYKRTNDTLETTIIHLFEKGVTMSEIADLIEKMYGHHYTPQTMSNMTKVLTEEVNAFKSRALNDKYVAI
FMDATYIPLKRQTVSKEAIYIAIGIREDGTKEVLSYAIAPTESTYVWNELLQDINSRGVQEVLLFITDGLKGMKDTIHQI
YPKAKYQHCCIHVSRNIAHKVRVKDRKEICDDFKAVYQANSKEEANTFLSGMIEKWKKNYPKVTQSLIENQDLLTFYDFP
PSIRRTIYSTNLIESFNKQIKRYSRRKEQFQNEESLERFLVSIFDTYNQKFLNRSHKGFQQVTDTLVSMFTE
>IS1201_Lcr#DNA/MuLE-MuDR IS1201 (IS1201 really is almost identical IS in Lactobacillus ch., gi|549104|sp|P35880|TRA1_LACHE) gi|33321489|gb|AAQ06499.1| transposase [Lactobacillus crispatus]
MIGLNKKNTYRKKNSFMNDFTKDFAQALFNPDKINDLLRKELQQAVNNLLEAELTAFLGYDPYARNGWNTGNSRNGAYFR
KVDTQFGPIEVQVPRDRNGQFHQHTLPDYKQHSDILESMIIKLYSKGVTTREIADLIEKMYGSHYSPAQVSNISKQMIPK
VEAYHKRKLSDKFFCVYLDATYLPLRRETFEREAVYIAIGIKPNGHKEVIDYCIAPSENIEVWTDMLQNMKSRGLKQVEL
FLSDGVVGMKTALARTYPKAHFQRCLVHVMRNICAKVRVDDREKIMNEFKQVHQQTNKEEATAVLHDFYTKWGKVYSHVI
RSLKDIEPDLLVFYNYPKQIRASIYSTNMIESFNNVIKRKAKPKAEFPTEQSLDAFIGIQAMSYNDRYFNRIHKGFGQVQ
DTLESYFD
>MuDR1_TP#DNA/MuLE-MuDR 346-4226 via genewise with MuDR2_TP, 1 stopcodon, 1 intron (1868:1959). [Thalassiosira]
MQNNNINAMMQQTGGVAMGGQQQNAVSVQRQDGGEPGSHGRRNNSSSSSDASFNNGHHGRLITAGQRGNNYSHHTTNGGV
VADGAQLQLQRQPQPLTRGGFNRSIYNAMENALATTSTSTSTLTAFSFTRDNRASYAQTMQRVADIRKDANTWSCPPIKL
DVAESLESDYIITIDIMETIDNTTKQIPRPKKRNNINCYWLVEQFFSDNDQNTRDEIISAIKNACRNVGFKVKCQYYNGG
YIKDIPAGTGWIDVKCFRCDYHDEEKNKDHYKKKRSNSKSTKEGKEKKKKTRKPVEGMEGNDELCPFFFKVYWDNNRKRW
FIPKKQKGEKVHCGHKQQQPSDIRLEAKHLLSSEDEELAKQSFDSFISTSSAKSLLETRSEGKVFGLSWQQLYHLKRKQQ
REAEDKQTTSCDKLVHYLSSNENISWLGLFADPTTNLLSIRKKKSKGNSALTVEDLSKELVLGDETDNPSLHVKVLKExE
SLIHTESGQLMLSVAFTSDSQRMLFDMFPEFISGDDTEGINCEKRPLYTLLGKDQNEKTFPIAWAFMPSKSFWAYEWFFS
MAMPALHPGDAIKRVQLIVTDADNQETGAVEKLVGGNLKPSKAEDRLYTKAWHRWCAWHRINCNFTQDSKYKPLLTKIKN
RCVLSKIEMDMLERWLWYFIKEYESSDEVQFCMALLKAYLNNANQSSHIGEVDEKDRKIILEFITTSFNARSHKLFESEF
DDDCMDLGNTTTSASEGYHRGIKNSVLGPKPDDHMHVTAQKLVKMAESKQSDKSQKASFDANATFAKKKDRHETVKEFSN
FANDKISDQYKGCQEKFLQYRISEDKFFVKFDYAKYEDDAKDIRLDVDEYNTFHEEESTVKDEELSNDNTKKLKELREKL
HSEGNAPTLEYRRMLHESMKYVIPRLEHTRVVELVPLPDGSQVLVCSCRTLKKRGHACRHMYKLLRRGPTLNDAHVRWQN
HYFEDYGCDEELTNAYMDLRSIELPGILLTDADVARIKSSMPVGSGDRDWDYFERSIGKMCLRGNNTFWTANAERLKHVL
GNAVWCPPIQKLGILKTNTVQPSTSHTLPSSTPRTLPPSTTYGPTEMVEWTSSYVVPSQRNRCKSYKSNLVDDNQADKTS
TCPELNLLEKFHPRYESLCKFAESADGDDGVKVMEEHFHSCQLRFLNFFHKNNVSNDKLTQPVDNLSKKYAGSNLYHRFK
PPYERICKMAEYSGKAGIAVVSEEIAACHVALTALVAGKEKLSNNKKDRRCQKITSPKKRPKR
>MuDR2x_SM#DNA/MuLE-MuDR 283-1641 [Schmidtea mediterranea]
MEFSTTNRGNSVLIYSGYEYLKFRTNNGVVTWRCRQNHQEKCRSFLKTTIDSSTIVTPPTRHSHDSCPQKAMANVAKAQM
KEAIKEVGATARNVLGNVLVNVNSDILGHLPKKSSIVRSLNQQKQSDRIANPTTHAFTIPEKYSAMILHDTGFDDPDRIL
VIGNRELLLELNKETIYGDGTFDKCPSMFYQLYTWHALVGTSYPPCIYFLLQKKNRETYIRMFEIMKQLLTNLSPRKVLV
DFEKACMTAAAVAFPDAEVKGCYFHLCQSLVRKVNCVGLKNLYESNVDVKLMLKSLCALAFVPANEVRSAFDILARTFPD
EDPYNAVLSYFFQTYIEGAIGRDPMFPVRIWNQWEAAAEKSPKTTNCCEGFHNALNATFHCSHPSIWLLFDGLQRDIACH
RLTLANYQTGRPEKKKRKYESLHQAVATAVQEYDSHADDESKLKYLRRMANLQ
>MuDR1_ZM_p1#DNA/MuLE-MuDR 932-3739 1 stopcodon [Zea mays]
MDSLVTLYHGGRVEIDAYGSVTFDGMKIVTMLFVERPTFDQLLARACEEISCDINDPRISIQGLLSHITYGTVVRRLISI
ASEDDWVIYLKIVKTMVPPCLDVVVQKLPVSQCEGPVGLSPQMPNASRIEAPLVELHEEVVVVPDAQSGPHEYGISRPIP
GVCGASNAVVPPQEIPLTQDPVDDHPSKCLRHIVRIHHYFIxLDFLMWFFLLRPDAGSPHINNADVQIDVPVSYNMDNIC
RASNSVDVQIEDEEEPYEAARAVDSDDDRPVQEMTEQEIELIRRLCPERDPAVHEFSSLSHSTRAYAEGRDDELLEAPDN
ADSIEIKVGLLFKDLPTLRRWLQEYSVNRKRPFKVRHSYAQRRYTVVCEVPECNWRVCARRQKDTGKFKITKIVGPHTCA
QTELSSKHRQLTSTLIAKRILGILKGQPNLKVKSIMTMTSELFGYRIKYGKAWRAKQRAWKMIYGDWEEGYEKLPALFNA
MKAKNPGMHYEYIPKPNEWRNGKEIFYRAFWCFSQCVEAFRHCRPVLSIDGTFLLGKYKGTLLVAISCDADNSLVPLAFA
LVERENRDSWSWFLRLVRIHVVGPGREVGVISDRHQGILNAVQEQITGYAPMHHRWCTRHLAENLLRKDHSKANFPLFEE
VCRQLEVSFFEDKLKELKDATNAEGKSWIAGLLREPHKWTRAYDEGGWRFEFQTSNMAESFNSVLKGIRGMPVNAIVTFT
FYRLVAWFNDRHAQAKAMQTRGQRWAPKPTSHLNNAKERAHRHEVQCFDEELGKYEVTTLGGITSDGEVRPLRTHVVLLD
AFWCGCGKPRQYHFPCSHYVAAARHRNFAFESRIPYEFSVESLVRTWSPRFEPFLDESQWPPYTGPVYVADPAHRWDKRG
SRKRSRCNMVMDQVSGRSRTGRASPFLVDPEQNECGKCGRLGHNSRTCIWTLSQV
>Polinton-7_NVi_orf#DNA/Maverick 7284-6796 R [Nasonia vitripennis]
MKSSQLLKNYVKLDIYIDTHNFLICISSTMSLDVFGRKLEGSQQVSRGPPGIGFNFTSDGDFDLEXKRLCNLGEPRXPND
AITLHSLKVILQTEXNYIASKLXGIGEVIEEYKQQVEKHQLEVNAKLKYLYBTTQRNYSGVDYIIEELNNFIIKEDGTSK
SS
>Polinton-7_NVi_int#DNA/Maverick 6818-5901 R [Nasonia vitripennis]
MERQRVAEELHKPARRRYKRRKYDIRGIDETWQADLVEMIPYSKENKGFHYLLTVIDIFSKYAWAVPVKSKSGNDVTAAM
KSILKEGRVPKNLQTDQGKEFYNSIFQKLMKKHNIHLYSSHSNLHASICERFNRTLKNAMWLEFSKQGSYKWLDILPNLL
KAYNSRKHRTTGIEPENVTQANEREVKRRFPNEKSPVKKPKFKVGDKVRISRIKNVFEKGYTPNWSTEIFTITRVVKTDP
VTYHLKDYYDKPVSGGFYETEIHKTMYPEIYLVEKVLKKSGKRVYVKWLGFSDEHNSWINKNEIV
>4102010_Hpa#DNA/Merlin gi|4102010|gb|AAD01406.1| putative transposase [Haemophilus paragallinarum]
MRKSRLSQHKQNKLIELFVAGVTARTAAELVNVNKTTAAYYFHRLRQLIYQNSLHLEMFEGEIEADESYFGGARKGKRGR
GAAGKIAVFGLLKRNGKVYTVAVPNTQSATLLPIIREQVKPDSIVYTDNYRSYDVLDVSEFSHFRINHSTHFAENHNHIN
GIENFWSQAKRHLRKFNGIPKAHFELYLKECEWRFNYSNIKSQISILKQLVKGSLV
>33148876_Hdu#DNA/Merlin gi|33148876|gb|AAP96394.1| possible transposase [Haemophilus ducreyi 35000HP]
MAQHFRLSTAARQLSSDSLVCLPDAEIFQRLKQARWGNADNFVCPHCHIRHLAYFISTRKQWQCKHCQHRFSITAGTIFQ
GAKLPLRKILLAILYFATESKGLSAIALSHKLNVQYKTAWVLLHKFRESLDKAKDLTPLNGEVHIDGAYTNYYIRPKNFR
HKRIDRRKKRYQRADKSCVLVFRQRAANQAVMKGADRSIVALVKEENTKDVLELTQRLVKPNSTIHADENPAYDCLAFHY
DLWRVNHSQEYRSIEGITNNLAESFFARLRRAITGIYHKMSNKYLMYYANEMVWREDHRRKSVKEKFEQLLTCCLNTLPS
RDFTGYWQGNKKGEAVFGLASLTASNDLHYLKAA
>23474798_Dde#DNA/Merlin gi|23474798|ref|ZP_00130090.1| COG3676: Transposase and inactivated derivatives [Desulfovibrio desulfuricans G20]
MTISSREDLLRSEDAALAYVLRECWPGGGRFCPRCGESRLYDLAGGRSRCARCKYTFQDFSGRWINNGGLSPLTWLRLAD
LFSREPTVHQMAVEAGLSYNATYKAVTTMRFAILAHATDAVQLLGPETGLGSFLRNRKLTGDPDSGGRGTVPVFGILERN
GWLFIDLVSGMSAETVFHFNHSFHLKVERAGNLIWTDRYRHYDALVFCGDDSLPYEYLRRHDRPVAVECGTGFWAFAEKR
LKLFKGITPRRFPLYLKELEFRYNMRHSDIFPVLVRYLCDFVPDMNPEGAAETAAGAARGHAAGSRG
>Polinton-6_NVi_py#DNA/Maverick 7749-9123 via genewise with Polinton-1_NVi_py, 1 intron (7918:7939) [Nasonia vitripennis]
xSFSYQSSAKRQxANTAKHTVPKKPKFASHRSWWKINCILFCCLTKNGRDSKHTVTTHYELHAHQPYTVSSYNNSDEIRI
AIQHQDLSLxPSRSSLHVCGKLTKPNGTALARTKLVNNAICHMFEEIRYEINAVEIDKCKNVGLTTVMKGWISHNPSQSL
IMENAGWLDIAETKSLTNASGYFDVNIPLSMIFGFAEDYRKIVVNVKHELVLTRSRNDLNAIIQTATLADGVATFEEYKL
ELTKIEWLMPYVVASNTNKIRLLNYIEKNRPISMSFRSWELYEYPVLPTSTKNVWTVKTSNQLEKPRFVILGFQTNRKNQ
QAENASQFDHCDISNVKLFLNSQYYPYGNLNLDINRYQYAVLYDMFANFQSLYYDKVSEPVVNKNDFISRLPLIVIDCSK
QNESLKSAPVDVRLEFESRDNFPAGTSAYCLILHDRIVQYNPVSGDIKTLI
>Polinton-5_SP_polb#DNA/Maverick 12132-7960 [Strongylocentrotus purpuratus]
MLPPPPSRLTTPTPLDSVKTGKRKTKTKNRGPPCSTSESSSSEDQDPITNIDDDEPFHDLPSQLPSTPNWEFIGQRISKR
FGSREVWYDHQSQLHNANTISEVLDYLRTSLEEIKDIVLRDTSPRDYVRLILVSTQLNVPVSFPWATVEHFDISAILDRI
DKVLNSNQNLFIDLGFTIRLYHIANPAGGRVRKFDGLPEQLAAFKKRSIITIPPSDDNLCFVEALVIAMLHSKNDKRYRK
KKININKTAHQPNSLVYRGRCKEALIYAGPPEGKAIYLYLSGSHYNMITNPSAFLCASQLCEDCHETYNDPLTHKCCCEC
PDCYATDCDSGTFRESKPSTIVCKKCRMTFLTKRCFQLHSVTLHKKLTACQRKYKCDKCEKVLDIHVIGCDPANHKCSNI
FCRTCKEVVDGRDHACFMKVTSNSPYYEVKSADETSKTVKPSTNLPQTNHHGQETPRENEGVPKQKKKCTQTAKEKKTKP
ENCTKYTFFDFECTQHTGVYEPNFVHASGECESCMDKDNSVCKRCGPPDARHITFKGENTLSNFAAWLFSEKHNNLIALA
HNSKAYDSYFLLNHLVAEGIIPQVVLNGGKIISLRTSDPCVVVKDSLNFFQMALAKLPKTFGLTELKKGYFPHLFNTRAN
ANYIGPLPDKRWYGYESMMKSAQIEFLSWHGKLCSENYVFDMKTELKEYCISDVEILHQSCKVFRKHFKTITATPTNKGG
IDPFLKSLTLPSACNLLFRTNYLKPDTIALIPQDGYTGSKQQSAKAGAWLHYKSLKKGIAIQHAFNGGERMVHGRFVDGY
ATVGEKKHVWEFLGCYFHGCQTCWAPDLVNQKLNQKMGVLYNNTMHRIRLLKQAGYKVHVIWEHDWDRKKKSDKVRDLLP
NVEHFSAGLRHPLNPRDSFFGGRTDGCRLFYEAGPREKIRYYDFTSLYPFINKFSKYPVGHPRIILSDFPPLEDIFGLIK
CKITPPENLFHPVLPFRSEGKLTFPLCRTCAETMNSGTCKHEDVERELDGVWVSEEIKKAVEKGYTNVRMQEVWHFESST
VYDKSTREGGLFSPYIDSFIKVKQESSGYPAHAQSDAAKQKYIDDYFEHEGINLDPFLICKNPGLRAIAKAIVNVLWGKF
AERPNLRKTVYVKTTDEILTYLRDQSIIVEDLIVHNEYMVELHYTQAEGFVDHNVNTNIILASFTTALARLKLYSVLEKL
DDRVLYMDTDSVVFKTDPEHAHLDPVTGDFLGDLTDEIDATGEDFIQSWLCGGPKNYSYRTSKGITVCKVRGFTLNAMNS
LVINHDTLNELLQSEQGTTRTIHESKIIRDVKAKTIHTVKRSKNYRVVFTKRVRLEDGKTLPYGHVDIPPLPTV
>Polinton-5_NVi_pw#DNA/Maverick 12962-13449 Fragment (ca 30 AA missing at N-term), via tfasty with Polinton-2_NVi_pw, 1 frameshift. [Nasonia vitripennis]
GGVRHVYSGSTYQRGRGIGAWLGGLFRKILPYIASGARAVGKEAVRTGINVLDDVANNGSNFKEAFKYRTKESGKKLKRK
AGEKIAEMMKGSGYKSRAMHRRRQLRKTRTSSTIGSSKKRKQHTAGRKKRVTRKTKKRPKKRSTQQQQQSLRSVTDIFGP
RRI
>Polinton-5_SP_pw#DNA/Maverick 2230-2688 [Strongylocentrotus purpuratus]
MYPYATNRVLRSHVFHNQMGRGLPVFRGAAMQRGHGLGSLVKGLFRAATPLLKKGAFALGKEAMSTGVNIMQDTLSGQSL
KSAAKRNVKRAGKRLAGKAMGGVRKKIGWRTKRPRVENIFD
>Polinton-6_NVi_p2#DNA/Maverick 9128-9634 Similar to Polinton-5_NVi_p2 [Nasonia vitripennis]
MEYAVDMQGFKKPGKDFVLKELAILPLEEDAEPVVLLFKEPFPWCKLSQKYKRENLWLELYHHGLSWDSGDHEYTEIGNL
LRDALKDASKIFAIGDVRKKWLERFNFKVTDITDCGYPATDHPKLVTICTNHNGAHKATCARQNVRLMRRYYFDNVFMEW
DDISSDEA
>Polinton-5_SP_px#DNA/Maverick 1454-2218 [Strongylocentrotus purpuratus]
MASHFYVSLPSNSSMLYYPDNKTCKYTTKLHAPLSLHDDYEVGLSEIQFQCTWYNVRKGNNTLYIYDRETVTDSVPLLRQ
ITVQEGYYMNGVDFIHAINAALDVATREKVNFSYIEASRKCAIQVQPGIGIVLPCSLARMLGFFEKCNLTQSTESPSPVD
VHMYFHSFYVYSDILQFRHVGDTSVPLLRTIAVMPRSRQENIVNTYIAPHYLPLKLFNFETIDIIITNETGEVVPFERGK
VLVTLHFRERSSRLS
>54308951_Ppr#DNA/Merlin gi|54308951|ref|YP_129971.1| hypothetical protein PBPRA1762 [Photobacterium profundum SS9]
MKSRQLYQCNQCHHQGSLTSGTLFSASKLPLNIWFLAIYLITQEKNGISALELSRQLGISYNAAWRMKHKLMQAMKERDD
ETPLNGYIQLDDVYWGGVHRGTRGRGAKGKRSRVPRYQ
>24210994_Asa#DNA/MuLE-MuDR gi|24210994|ref|NP_710165.1| putative transposase [Aeromonas salmonicida subsp. salmonicida]
MDQDKLKALAAELAKDIKSEKDLGTLTQQLIKLTVETALNAEMDEHLGYEKHAPQGRGTGNNRNGYSTKRLKGQHGEVTI
QAPRDRNASFEPQFVRKGQSRLTQMDDQILALYAKGLSTRDIVDAFKEMYDADISAGLVSKVTERVIEQVHEWQNRPLDP
LYPIVYLDCIVLKIRANQRVINKSLYLALGINMEGHKELLGLWLAETEGAKFWLSVLTELKNRGLEDILLACVDGLKGFP
DAIAVEYPQTKVQLCIVHMVRNSLRYVSWKDYKAVTAELKQIYQSATEREAQQALATFGERWDSQYPQIARSWQNNWDNL
ITLFDYPPAIWKVIYTTNAIESLNSVLRKATKQRKLFPTDESALKVAFLAIQQASKKWTMPIQNWKPALNRFIIEFGDRL
NGHL
>21530790_Lde#DNA/MuLE-MuDR gi|21530790|emb|CAD33970.1| putative transposase [Lactobacillus delbrueckii subsp. lactis]
MTDFNKECLNALLNKEKFDEFMRTQLEEGLDQLLESELTAFLGYDPYAREGWNSGNSRNGSYFRQVKTQFGPIKVQVPRD
RKGEFHQHTLPAYGQHTVPLESTVIQLYSHGVTTREISDLIEKMYGSYYSAGTVSNISKQVASQVESYHQRQLSDKFFCV
YLDATYIPLRRDTYQREAVYVAVGIKPNGHKEIIDYRIAPVENIEIWGEMISNFKERGLEQVELFLSDGFVGIKDMLKQY
YPKSKFQRCLVHVMRNIKGKVRVSDRKEALDDFKQVHKQSSLKEAETVLHAFYDKYDSKYSSMIKNLQKIEEDLLVFYQS
PKQIRPSIYSTNMIESINNMIKRKTKPKSEFPTEESLDNFLGVQAIGYNDRNANRTHKGFGQVTDTLESYFD
>25028021_Cef#DNA/MuLE-MuDR gi|25028021|ref|NP_738075.1| putative transposase [Corynebacterium efficiens YS-314]
MTTVAKQDPADSARIKAIEEKLLANPEMAKLIDELGTSTTDANDLVRGLLQASINRGLNAEMDAHLGYGHSDRDGKTAAG
QGNHRNGYYPKRVDSNYGPIDVAVPRDRNGSFLPTMVPKGSRRLTDVDDMIISLYAGGMTVRDIQHHMITSMGVDISHET
ISAITDAVLDEVMIWQNRQLDDFYPVIFLDALRIKVRDGGRVVNKSVYLAIGVDMDGIKHILGIWLAKEEGASFWANVCA
NLATRGVQDVFIVCCDGLKGLPQAVEATWPDSMVQTCVVHLIRAANRWVAYGDRKAVSAQLRKIYTAPTEDTAIAALEEF
EASELGVKYPQSAKVWRDAWDRFIPFLQFPPMARKVIYTTNSIESMNNELRKATRNRVQFTNDESAIKTLWLMICNIEDK
RAAKRAKQGKRVAASSGRLIEGRKVANWKQAINQMAVAFPDRFEAYL
>29826887_Sav#DNA/MuLE-MuDR gi|29826887|ref|NP_821521.1| putative IS256 family transposase [Streptomyces avermitilis MA-4680]
MTAPDSLPLHALVEDNLAAASPDLLRAMVKTFADALMSAEADALCNAEYGQVSDERVNHRNGYRPREWDTRAGTVELAVP
KLRQGSYFPHWLLERRRRAEQALISVVATAYLLGVSTRRVEKLAESLGVTQLSKSQVSAMAKHLDERVAEFRNRPLDQGP
YAFVRVDALTQKVREGGRIINVHALIAVGVNADGHREILGIDVATAEDGAGWLAFLRSLTARGLKGVQLVVSDAHTGLVA
AIGAVLPGASWQRCRTHYARNLLSQVPKSAQPWVATLLRTVFEQPDTDAVQAQMRHVLDALEAKFPKAAAHLVAAQHDLL
AFTAFPREIWRQIWSNNPQERLNKEIRRRTDVVGIFPDRTALIRLVGAVLAEQNDEWTEARRYMGRELLAKARLHPIESE
TDETELPTELTA
>27807845_Taq#DNA/MuLE-MuDR gi|27807845|dbj|BAC55317.1| transposase [Thermus aquaticus]
MFNRGAHLSTRRCPVDQDTLRILLREAVRETVAEVLQTVLELDRTAFLQVHGGRRNGYYPRKLETTFGQVDLKVPRDRES
RYYPAFLKPYARRLVDVGEVAVALYAAGVSQRKAAEILSLLLGHRYSHETLSALTDEVLEAAGAFRTRPLPEEMAFVYLD
GLSLKVFREGEGIVRESVYVALGIAPNGERRVLGFWLLPTESALGWEGVLGELWQRGLRRVLLFVTDGLPGLPEAIRRVY
PQAEWQRCVVHGVRWSLSQVRSRDRALLAEDLRRVYGAESREEALGALEEVKAAWGSRYPGVVGLWVQDSGAFLRFYGYP
KVLWPYLRSTNLMERFIRELRRGTKVRDHKFPKEEAVYKLLYLESERQEGRWAERKLKGFSEVKEVLEKMLQERYAPRTQ
TLTHNS
>21229059_Mma#DNA/MuLE-MuDR gi|21229059|ref|NP_634981.1| Transposase [Methanosarcina mazei Go1]
MTLYPFPFTTKKQDAESMVDLFSLIKDYLVDQEDGIRHLITWFLNLVMEEEALLQVGAQRYERTDSRKASRNGYKPRTLL
TKYGELELLKPQFREFPFETQVFEKYSRVEQAILSAVAESYLQGVSTRRVDKVMTALGVEGISASSVSRITKELDEKVSE
FLSKPIEHEIPYLFIDATYLKVRDGLHYENKALFIVSGVRDDGFREILGARLADSEDSLFWQDLFEDLKERGLRGVKLIV
SDGHKGIQKAVRESFIGSSWQMCHVHLIRQALKKVQKKKQKEVADKIKEALVDRQKYNDLIRELDKMEYKSAADTLENFQ
YDVMNYMQFPQSHWRKIRTTNMMERTNKEIKRRTKVVGAFPNQESVLRLVVSILIDINEDWITGNRYIVMEQ
>Merlin1_SM#DNA/Merlin 71-991 [Schmidtea mediterranea]
MDYQPNKKSMINLNLLSLYDIVRTKEGAIRFLQDRGILNRRKACLNNHEMILSITDERERWRCTKKTCRNEVSLKSGSWL
ENINLSYTEVVLFIYSWSFELTSIKFCQRELSISSNATIIDWNNYLREVCASSLLRNPLIIGGPGLHVEIDESLFTRRKN
NVGRVYPQQWVFGGICRETGDCFLYVVPDRSANTLMPIIQQSIRPGSIIISDEWRAYSQIPNLGFGYVHETVNHSVNFIN
PITGANTQMIEGCWSLAKQRNKRHFGTHRGMLDSYLCEYMWRRRLNGANPFEKILHDIREYWPPAQ
>ISTde3_Tde#DNA/Merlin gi|42528205|ref|NP_973303.1| ISTde3, transposase [Treponema denticola ATCC 35405]
MYTRLTTTKLNRIFLCFSEDITAAATAKITGINRNTVNRYFGIIREKILKYSIFEQTREISGNVRHISYFKKAKIRRKKI
QEFIAARPVLGLLKKGKKIFVSLVHDDSHESLLSIIKGDLEKLISHQNKIEPFNTSLLKDCDQYRVFYNESEIKNEHTAG
IENFLTFAKKRLAKFNGFSSGSFLLHLKECEFRYNHRDEDLCALIKKIFKKF
>MuDRF-2_MLP#DNA/MuLE-F 469-4892 via genscan, 6 introns (1494:1594, 1803:1868, 2054:2112, 2618:2680, 2986:3074, 4715:4779) [Melampsora larici-populina]
MGQVHSLSAGEEGCDLSSLKGGHLTDNLSPSNHLDPTKDRPSSVIPSTPHRRLNFIPLTPLRSSQIGPSSSGITLSSSDL
VTMTDSDSPTPSLKTKIVKKSKSKKKSKNSKEKQNQLERSQFERSESGSPLNSKKSKKKHHQIPSPIDNEAEDLSYPQEQ
TKSKKKGRKRKRRSSNSIPDDAISETHSENVTHLVKRPQLQLITDKSQHTTFIDFGSVVDAQGYPKYPNGDTVFVCPPDE
KVKNFGFVGWTHTMKTDSSHKYWKILQFTCLGVMKCSNTGCPFAGSPPTGHKMIEKLLNRSCEGLQVHIECSARCRFDEE
KTENPWRILRHQGDHRHVWPEAKKADPMSKSQLKDMVVNDPKTGPLGLKVGRAHAGTDPIRTVVDVHPSFGNAERLGYLR
RLFLVEAGLMPDSKDKDGGDRWLLQLIHWTTNGMRIVSESLKVEDIHISFQSKWMSEVLVHEENGVSYEGGLLSDVTYRF
FNHGYLMTTSMYCEKIERFVPVLLTWMNGLSKDHYKSHFKTLLQQIKDTAKSDEQKNNLTEQIVDFSQAQKVGFMSAYME
VFNVDRDVALSKLHGCSQYFSQAVTCLKKNRSIVRFDLKDDWEAKCKALLKPDTPGNTLEMKFAKLFLEFLNAKKWLDWW
CTADTQAMLFPGRKRMPLDDPPLSDDESDGEKLLTVKEIKKKLHSTTNGQESMHRVYYLLSKGKCSIIAGFIQLLAFVQS
LERDYQNAQKGVSIAYGSSQKNWEELVKGLGMPKPTKRRYFKNDGRPPDTTDELLGNTKKTKASTRTPGRPRGSQNVNRA
ALTTYQSYTKGTRPGTTNRCWQSSTLESLYALFGPLWSDFGSVNGSGLVHVLYQHLTKRCTAQLQGKNLGRLLSSHQNLL
HNTLRTPTSYQPDKMASADQFMERLLRPGRHSLRPLFEVPFIKAHICPADAKHTRVESKTRACQALFPYNFTDAGLSYDE
VGLMIDLLMSEGLSTDSRLVCRKCHPEDNNEDESDCVIQASPPQNLTTLVENVKIDLTSNPKLAPLHLYFLLEGIAGLEA
SARVDFQNNTNWPSRIIVGDVEYCLMTRGYWGGLHYWCKVVRDVEGILGVWHYDELQSGGFAQLLSRNITSIGGCDAQTS
WLCYSQIPFNHERSRIASSIRDLMKEFPQKHTLIPFTMPLEGFPVGGGLPSLEEVVEVAQEHQEEVPEEHQEEMVENHHN
NNHDNQPPTQSFKIKLKLAPRIPSTEKLAGDGEGGADLNNKETLVKKPKMSQKSQPAGEDDQAGQPTTKAGRARAVRAKR
GVKKV
>7321061_Ath#DNA/MuLE-MuDR gi|7321061|emb|CAB82108.1| putative protein  [Arabidopsis thaliana]
MVEKVIIYFRWKDRAYSLMMNGKITLSMLESRICSKLGLDESKVKLQMKYNAVMLGLTQEIHISDDEDVGVYISSGEMVS
RYPLTVDVITPPELPEELSRVEVVNKSSIGKNYDGLGSNEDEMRDNATIVIGELDGQGTELNGAIVVVDDTQDHEIGSRD
DRDDDDRGDEYVEPPPDVESSQFKKEWEDGIGLTLRQEFPSRAALQEVVDKGAFANSFDYVIKKSDKERYVLTCSKANCD
WRIQASCVQDTSIYSIRRYNKMHSCTRISKSSTRMRKRKGTPELVAALLHDTFPGLLETPPPKVIMELVQTKLGVKVSYS
TALRGKRQAVCDLKGSAEDSYKDINCYLYMLKKVNDGTVTYMKLDESGKFQYLFIALGASIEGFQAMRKVIIVDATHLKN
GYGGVLVFASARDPNRHHYIIAVGVLDGENDASWGWFFEKLLSVVPDTPELVFMSDRNSSLIKGIRNAYTAAHHGYCVWH
LSQNVKAHSTNINRDVLAWRFMELSRIYTWSEFEREYRVFKVRYPTAVNYLEDSTVKEKWGSVDNKFVPLVENYLHNLWV
DAEKLKVTELNTFRLEYNVRGVEGNEYLVNLHFKTCSCKVFDIQKYPCIHALAAFIVFDSDTTRTRGMELHELVSKYYWA
ELWALAYYGTIYLVPGRSQWDIPDDIKALKVLPLPRKKKKGRTKVLRIPSTGERRPKRQRTQNKRRPRQSLQWLLFGTRT
MDRLCESDPWYGEMKSAKRIMQQLEEVAMMEGIPPICPCGGRILDIISEKDGDKGKRFYECTNYKNDGLHIRKLWDKAMV
EEVNRLREQVDNHHQKIQSLEYYNQQMRSKLDEIQKKMGTLWRICCGE
>208687_Bce#DNA/MuLE-MuDR gi|208687|gb|AAA25037.1| ORF1, major from IS406 [Burkholderia cepacia]
MAMRVETNPLEAAYAALLENGLDGAGEALRILVNEAAKIERSAFLGARPYERTETRRDYANGFKPKTVLTRHGELTFQVP
QVRSSDFYPSALEKGTRTDQAVNLALAEMYVQGVSTRRVIDVLQRLLGPEISLSSAQVSRAAAKLDEGLRAWRERPLGET
PYLFLDARYEKVRLEGRIVDCAVLIAVGIEASGKRRVLGCEVATSEAEINWRRFLESLLARGLKGVTLIIADDHAGLKAA
RRAVLPSVPWQRCQFHLQQNAGALTTRQEARKTVAAQMRAIFNAPDRTEAERLLKAALTLWCKEHPKLAEWAETAIPESL
TVFDFPAAHRIRLRTTNGLERINRELRRRTRVASIFPNPDSCLRLVSALLAELDDEWMTGKVYLNFNP
>IS150_insB#DNA/IS 512-1417 [Root]
NAAYVSKKAESLSSSHEKVKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKKRISEIYHENRGRYGYRR
VTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRGEVGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLS
PVIDLFNNEVISYSLSERPVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSAKGNCLDNAV
VECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQTYMPRV
>31196465_Aga#DNA/hAT-Ac gi|31196465|ref|XP_307180.1| ENSANGP00000025171  [Anopheles gambiae]
KPLTSEAKKKQDELLLKLICQESLPFSITESEAFKKYSYGLNPNYELPSRKTVSEAILNREYNKSLQKVKTALENTTKIA
LTSDGWSNINNTSFYALTAHYIDNDNKLCSNLLECSEFPYQHTGHNIAEWVNEVTEKFDITEKVVALVTDNASNMSSAAK
ELKQVNHFPCFAHSLSLVVKKSIEKAIETTVDEVKRIVTFFKKSSTATKKLSEVQTQLNYPVLKLKQDIVTRWNSTYDML
ERFYKNKIPLLSCLDTIKMKTSLQNKDWIVIEQAIKILQNFDYATKIASSEKTVTLSHMGLLIKILITKTTDLLNEELES
SVRKLGNYLIHGLEERFDPMFRNTIVNQAMLLDPRMKRQSFENEENRYEKTYQSIIDIIETIYPNQTIVNTATSNSQTQD
NQEKDQYRQHLFGDFVSRISIRQVASDPKTKAKQELDGYIASEYAELESDPLAWWKQNQSRFPNLYKLVQGIFCIPATSV
PCERVFSKAGQIYTEKRSRLDPKKLTELLFL
>hAT-19C_Croc_tp#DNA/hAT 288-2060 [Crocodylidae]
MLQQCCSLKMMSEKKSKKAKYISAQDRVRQFPVGTLHADGGKLFCSSCNVTLDVSRKNSIDRHLESESHIKRKAAAEAEG
QSKKQATMSSIFKRTTESSLTRREATFALVEAFTAANIPLEKIDNPKLRDYLNKHVPNAGSFPCANKLRQDYLPGVIASH
VQSTKSALAEYESISIVADEATDAQDNYVLHILFVPGSWTDRDLPVFQTEPVHLASVNFSTVAQAVVKAVVNYGLEFNKI
SAFLSDNAMYMCKAFSDVLHGMMPNAIHVTCNAHILSLVSDIWRTRFPDVDSLVSSFKKAFKHCPGRKLRYRESIANQSG
DLHATVSLPPEPVLTRWNSWFNAVRYHAKNMKYYQQFVCEELEITPGTQCMLKLRDLLRQGDIEDQVKFVAENAIRFMEL
LTWFESRQALIHQAHNKLMDLISWVEDMASQQLSNCQRENQRRQELFQAIAAKLNQYYKYDQSLPPRFKQPAASFFSAVR
IFYPNQVPFLSFDPQLLKSIPGWQKEHDKERAAYMNFVKECQMPLTVTVFWESVSDRFPHLYNLAKRCLTIPTNSVDAER
AISVYGQVFTPQRQRMSAATAGGCCMLAFNN
>31207437_Ag#DNA/hAT-Ac gi|31207437|ref|XP_312685.1| ENSANGP00000015358 [Anopheles gambiae]
MSADRRNSDVWSYFVQLNSSNSYKCRICQRVLSAKQKSTYTLKRHLEAKHPTWTSNSSANSSDKNKDTATNEDIGEHSGS
PIPRKSIQGTLGDFVQIQKPLNTSAKTKIDKKLLKVFCNHAQPFQLVEAQDFKDLVKTLCPSYNLPARKTLSNAMLDASY
QDLLEKVKNNLTEAKAVALTSDGWTGINNDSFLAATAHYIDEKSGLLKSQLLECGNFTGRHTSENIAKWLTVVQETFNIK
SKVVCVVTDNAANMKNAVMLSGVEHIPCFAHSLHLVVKNSINASISDTVERVKKIVVYYKRSSIATAKLGELQKNLHHKE
QKLILDVSTRWNSTLFMLRFCAAAAIHVYCGTSQTIVGNPLVFLAPSVTTGATATIRLLFNENKEPIISSLALLGVSNPI
EENDWVIMTDAASVLKVFHSITQEISAEKNITLSKVSVIIRLLLYPRFKKKGFENDVEFEEKCRSLISQMDNVEECEYDI
EEAIQVNESTNRDEPVDSIWNEFDENSNSQIVLHRRTSSQIELDNYLAEPLLHRKDDPLEWWKLQKNNFPNMYKIMLRTL
CIPASSVPCERVFSKAGDIETAKRNRLSANKVSKILFIKYNLEDE
>ATHAT7_tp#DNA/hAT-Ac 604-2856 [Arabidopsis]
MASNETLPPNDFDDVELSGNDDDDVVQHTPTSGNKRKRKEKETGDEGDGGNSSKKKKTSSRSYVWDHFSRKKGNPNKCNC
HYCGKELACPSKSGTSTLKKHLELSCKAFKAWKSTNTDQTQTVIGRDGGDGSLTMYKVSELVIREASIEMLILGELPLSF
IESVAWRHFCSKAKSYKPVSRRTTTREIVMLYVKKKVAMKKILGKSQERMSLTTDIWVSNNTGESYMVITAHFVDVDWKL
KKMIIGFKHVTDHNCGTICKVLLECLAEWDIRRIFCITVDNATANNTALTKFKKTMKLIGDDALVLKGEYMHMRCDAHIL
NLVVKEGLTEVDASVTSIRNGIQFVRSSTNRLKSFDLRCDAGTISRGSFPLDVKTRWNSTYLMLEQAVKFRIAFEKMEAE
DKLYNDYYLEKVDGEKKIGPPMSSDWDAAERLIQILAIFYKSTLVLSGSTYVTSHKMYNEIINMARNLTTLNTDTFFDEQ
LKKKAIAMLGKLKKYWDPFGEGVEMNRLVMVATVFDPRKKMKFVELCFGKMYGLGSVEVVLLSDSVIQILKDLYDEYSRA
NLLRINGGSDSMPSSQSQGSWSQSQEQDRSGAYERTINKTGIQLEDMENLFDEIVKETCIHKSSNELDLYLNEAVETPHL
LMGIESDVLDWWKLNSGKFLVLSLIAKDIFAMQVSSVASESAFSTSGRVLDPFRSCLTHYMIEVLMCTEQWLKSEISINE
KGLSTIHELLADQVDEDELMRGNLFPLNSL
>31208475_Aga#DNA/hAT-Ac gi|31208475|ref|XP_313204.1| ENSANGP00000024739  [Anopheles gambiae]
LCPSYTLPARKTLSNTLLNVNYGKFLEAVEEELINCKAVCLTSDGWTNSKNESFLAATAHFIDSECKQKTYLLACEEFSN
KHTSENIAVWMKQTMDNFKITKKVVCVVTDNAANIKSAVQLAKIEHIPCYAHTLNLIVQCAISNSIQSTVTSVKEIVKHF
KKSAAASLKLRELQEHLHRVQVKLILDVPTRWNSTFHMLERFYSNKDPIVSSLAILSYNSHLNENDWTIMNEASNVLKFF
DLVTKEISAEQTVTLSKMRVITSLMIKKLECNSDCETNEVKKLIKLLSDGLHEKFVYIDREIVNQATILDPRFKQKGFQS
DTEFQQSCKHILLRLDTLPTQTNEFQLQTVNETEDAISEDLVTDSIWKDFYTEQNDSQVILHTRTETQKELDNYLAESLS
HRADNPLEWWKLHKNKYPRLYDLMICTLCIPASSVPCERVFSKAGDIESCKRIRLHSSKLSKILFIKQ
>39586475_Cbr#DNA/hAT gi|39586475|emb|CAE73602.1| Hypothetical protein CBG21088  [Caenorhabditis briggsae]
MKEHFLLRLVIGLVEWVQHLCAGTGISINWCQCSSNQLKPIHKGSHGKFRRLPRHPIPWGTSFVFRKLRVLLYDDESDEY
VETGKAACQNCLTLLTVSDGDHVRRHVKERCKRRKRVVENTENEKEEEPVFKNRKISEYSTKKLKESDLTKIYKALSKYC
LRTGRSFNHMNSDAMKSLMMDIFNTTSSGYGEAALKQLPHRSTIQAHSEALSKDLVEKSLRYMEPYKGEINLAIQIVPVG
FTPALEGKTGRDTANSILQKLQSLGWSREDVLRCNVTGDGALSTFVIRCVNHSLNLVASRVVSPLKVHRPRLVDFTSELQ
KAEEILALAGDVAVAVRSNNAICASLPRLPALKCETRWMSSAECLSDVLDLLEDIQKCSGLSAKGRSALNLLTDDHPKRA
RALLHILKPLLAHNKVFQSQSAVTLHLVLPTYKHLEITWTEYAKERFEDIDEDLIDVEMLRALSESGLLAVQHYYREFEE
VHFAAVMLSPFTKRMSNFSKEEFDKAKLYIVNRLPAIPPATVPIQDDPSDPIAALLKKVQDSAVLVPKSDDLERYLGEHF
DGSGQESLEQFWRGKKNEFPALYKVATQVFSVVPSESMCESSFPRAAFLLDKTRSRLAYTKAEIVVVGAQLATKFPDWLN
>CryptonS-15_PI_yr#DNA/Crypton 301-2411 via genewise with CryptonS-7_PS_yr, 1 intron (836:894) [Phytophthora infestans]
MSIASLAPGNSKKARTTALNSFITFLGAESMTLSAAHKLIDADKTGKVLRIMLDKYAYSLARSQDKILATNTCLAYYGNV
KNWLADKYPLQSGLVKPQLQKILSGLGRYCTNREESGNERVAPPCSKQDLEAIVRILYTTASNESEYLDSALVVMMWYLY
GRSSDAEQVEKQQLSILPGGVLFLRFKRVKTAVLQGMSLFKDPNNFLTCPLNAIAVALVMQSSPCKRMFPQFLKKKRSST
SVQDLEELSLVELLETEDDHTSMPESSNSAAASLPGAQAYVNRLLVRARDNAKLHNVRLTPGLTSHSFRRGGAMHANDGT
VAENWIIERGGWQLDRVNKAFGYMLGTTQADQQVSRVLSGWKPKDGARLPSLAALDTPVLCRALKLQALIFSNTLGFADE
ALNLDEDVAEVLTATLILHYPDMLRLCERSPYVTKMREAMTARSVTESELLAWSITVRRAFIPPLEPKPAPPDREDRLDS
LLELVQHQTKQIDVLILQNKHLEQRLVAVEGQLRSTASTTTQAATTIDPSSATTPPQPPQPGVKAARSKKKGAQSLAATW
FAWFTAEPRVYAARSVKKATLYEFRHTAGYMMLFLPTGFALDAASPAFKSEVLALGEKAQENALAFLKENGSSAAASGTA
LKAFRKLHKAGKLDAHLAQFHDRVERGDVVDPTPTAALPEFIRLKRLGC
>CryptonS-8_PS_yr#DNA/Crypton 294-2428 via genewise with CryptonS-13_PI_yr, 1 intron (829:896) [Phytophthora sojae]
MSIASLAPANSKKSRTTALNSFNAFLECENVTTDAAHKLIDADKTGKVLKIMLDKYAYSLARSTDKVLSTNTCLAYFGNV
KNWLLDKYPQQGAIVKPQLQKILSGLGKYCSNREDGALEKKAPPCSKQDLENIVRLLYTSDSADTIYLDAAVVVTMWYLY
GRSSDAEQLEKHQLSILPGGVLFLRFKRVKTALLQGISLFKDPKNFLTCPLFAIAAALLMQKAPCKRMFPQFVDTKRSAA
NVEDVEELSLVELLEADDDPTALVEAEQVSGKPKVPGAQAYVNRLLVRVKDIAAATDVRLTPELTSHSFRRGAAMHANDG
SLAENWIIERGGWQLDRVNKAFGYMLGTTQADQNVARVLSGWKPKEGARLPSLCALDDPIRERAGKLQALVFSSTLGFDD
TALNLDDGVADVLMATLVMHYPDMLILSDQSDFILRMREAMEARAIGESEVLAWSETIRRAFTPPPPKVEPHANDAQSAA
VVALLKRQSEQIDVLILQNKRLDERLLAVEEQLRAQSDVAAPNALEGASTSGGLSPVTVQPPATKSVRPKKKGSQSLSAL
WYEWFTAEPRVYASRSVKKTTLYEFRHAVGYMMLFLPNGFALDVAASAFKNEVLNMGQQAQANALAFLKANGSSALAAGT
ALKALxKLHKTGKLDALIADFHERVTNGAIxDPTPAAALPTFIRLQPNL
>CryptonS-21_PI_yr#DNA/Crypton 298-2448 via genewise with CryptonS-9_PS_yr, 1 intron (839:902) [Phytophthora infestans]
MSTKALIPGNSQRARLTALNAFERFAASENMTMETMYKLIGDDSTGEVLYLVLDKFGVFLAFKESSKGSLLSKNSVASYF
GNVKxHLIELYPAVGAVAGRxLQKIASVLDKYCSKRSTEFTHQAPPCTKKDLRLLTTAILSEATHDDDYKDAALMNLLWY
LLGRSSDTMSLLKSQIAVYPGGCIYINFKRMKSASCQGASLFHDRANFASCPIHTVAVATIMQSTPSEYLLDHLPREPED
IHQIHLGETSLIExLEAKVASGREGDALKTQLEQHRSTVPGIHAYVNRLLRKWSAFCTKDGAALAKGLSSHSFRRGAAQS
ANGSSSISTPWIMDRGGWSMTAVSKAFNYIVNTTQEDQAVGKTLAGWDXKSDARLPTFEGFDDVVVRRVRLLQGLLFGIA
QGFSDTLSLRDDAVEVFMAVIILHYHDMVQMAPSSPYIARVRQALGKLHITESEVASWCLTIHKTLMRTQHVDSQQAGRG
QTAETRADELLRKRTTLLEQQTKIVDGLLKQVRLLSDRVQKLEGSSCGPATPLPVPPLQPGASDVNRPAARLAAAGRRKS
GPKSLTAVWLEWFCKLEPYAHEDRRRYHEMKVTVAFMRLFLPNGYDATGNCAADKERILETGREAEANIRVLLDSHHKKA
KSYGTVIRALKEMHEAGKLNGQIQHYHAQVREGCVIDDSPPKSFYKLSLCNIQDST
>Ginger1-5_HM#DNA/Ginger 231-2879 via genewise with Ginger1-7_HM, 5 introns (373:620, 809:984, 1291:1381, 1534:1621, 1765:1839) [Hydra magnipapillata]
MPKINAKSQELRLEEIRQYVLEGKYANTVLNSEKRGLRIAARNFKGIDGRLYYIRDESLRLVLYSQEERKRVLKECHNDA
GGAHQGIVRTQNKIKNLYYWMSITSDVEAWIKTCKQCQSFEKIKTIAPQLHPIQVTERWAVLGVDLIGPLPETVNGNKYV
LTITDLFTKWIVARVLPEKSAAAVATALVNTFHTYGPPKKVITDQGREFVNELNNKIFQLMGIKHSVTSAYHPQSNGQDE
RTNQTFKRALSKYTNNEMNDWDSYTSAIAYGLNISCQKSTKMTPFYLMYLRHPPGIEMINVLNETDDSLNIRENIKIAQE
KQCKQHMKKVAKKGIKTFTFKINDQVMKLNARKRGRKGEPLSKEWMGPYTLADLNIKGQCTLKNLNGEILKTKVNVSQLK
PYYPCQDIETNIQHLEATHLDLSYSSYPATNTVKKSEPGQITSSQNQFYIKNIDSIDTYSSKNSITFSVPISAFESILNQ
NMLGDIEINAAQVILKNQFPDIQGMQDTLLGTNLMFRIQSQEMLQILHDGSLHWLLISTLGCSDRVVKIYDSMKTEMPTL
HVQKQIASIISCSKNTVMCQYQSCQQQVGGIDCGLFAIAFAVDICMGQNVASISYNQSAMRQHLHNCFKAKHFTSFPRSY
SESTVNKCESSTIFNVC
>GIN1_int#DNA/Ginger EXAPTED GENE! gi|7020019|dbj|BAA90963.1| unnamed protein product [Homo sapiens]
MVRSGKNGDLHLKQIAYYKRTGEYHSTTLPSERSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVIVSEEEKKKVLRECHEN
DSGAHHGISRTLTLVESNYYWTSVTNDAKQWVYACQHCQVAKNTVIVAPKQHLLKVENPWSLVTVDLMGPFHTSNRSHVY
AIIMTDLFTKWIVILPLCDVSASEVSKAIINIFFLYGPPQKIIMDQRDEFIQQINIELYRLFGIKQIVISHTSGTVNPME
STPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSDSLHEVDGDNTSMFAKILDAI
KEADKIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLNPFHLKVGHEVLRQRKIGGRMVVFSLNGLVLVS
>HAT2_CI_tp#DNA/hAT-Ac 407-2236 [Ciona intestinalis]
IVCNNMPVSNVWQWFSKSESDVSCKLCSKGFSLRCSTTTLKYHLQSSHKDKLAGASGPSSSGSSESDVLVQSDIRQYQVR
PKLSDDESRRIDVLVSSFMWRDMRPFHIVEGQGFRDLVHGLNHQYKIKHRSTYQAITERTYKSAKSFLLDVLQHANYMGI
TTDMWTSIRNDSYITVTVHWITDDWKMQHGVLTTECMTEANTAENLSLRLTDVLAEYRITSNKISATVTDNGRNIKKAVD
LLDDWTQLSCFAHTLQLCVKAGLDIPAVSRMRAGARRLVNHFKHSSKATAALREKQFSLRPGETVLDLITECPARWNSTF
DMFDRLLLLQWCIRAVLTDFKITKPSVASSLQMSSTQWDLCQSLVHVLKPLKIATTMMSASKYPSIPWIYPVLFTLQKKL
ESCDIDSGATAHCKTAIREQIDKRFFASNWHRNLPVLASVLDPRYKFLKFIDNDATRQEVYDHLKGQITEFAAKYSDFEQ
HLQSESTNEAHTFDPFEELCGKDTKKQTVVAPEDEIKAYLREPAQPSDSDPLQWWKLNAARLPTMSLMARFYFCIPATSV
PSECIPATSVPSESVFSSAGHIVNAKRASLTPANVNMLVFLNKNAHMII
>47212124_Tni#DNA/hAT-Charlie gi|47212124|emb|CAG06226.1| unnamed protein product [Tetraodon nigroviridis]
PTGGSTMARRVSAMSSNLVDQLEQDLAKCKWFSLQCDESVDSSSTAQLLVFIRMVFNDFSTKEELLTLLPLKTTTRGVDI
YNTVKEFFVQKKVPLEKLVAVTTDGAPAMVGRQTGFIAHCKRDPDFPKFLHYHCIIHQQALCAKVIGFGHVMTPVVKIIN
NIRSKAKQHRIFKVLLEEMSAEYGDLLLHTEIRWLSRGRVLHRFLSLLREIKEFMQSKGEDVSLLEDTEWTLDLAFLVDI
TGKLNLLNCQLQGKGKTVVDMISALNAFKAKMNAFSADLQRKKVLHFPSVQSVLKDNASASETFEKVAEKYIEVINRLGQ
EFENRFCDLHQLEPCVFFISNPFMNGDTTCFAEQLSATFNLDAGQVEIEIITLQNDLHLKAYQAAPNFWRLVDTEKYSGV
CTAAMKVASLFGSTYLCESAFSDMNFIKNKHRTRLTDAHLRDSLTVAVSSYTPDYNTLVNSMQCQSSH
>47205550_Tni#DNA/hAT-Charlie gi|47205550|emb|CAF94731.1| unnamed protein product [Tetraodon nigroviridis]
STMAKRKVDTENRGFQTRWESEYTSTEVAGKPACLLCGESVALMKEYNLRRHYETKHADKNKNMDMEQRLQKVEEFKRGL
KSRQDRAPAMCGHRSGLVARTREKMQKENVIGDLTAYHWITHQESLCGKALNMEHVMSTITRTVNFIRAKGLNQRQFRAF
LSELEMERGGLPYPTEVRWLHQGKVLHRCFELCEEICLFLDNKGKDTTQLRDKRFLCEMAFLCDITSHLNAVNLQLQGRG
RVISDMYRTVKAFQTKRTLWEAQMRKENLSHFPSCQTMTDQLSTSVFLSAEFADKMSELAAEFRHRFADFEA
>HAT-5_DR#DNA/hAT-Charlie 473-2320 [Danio rerio]
MAESGKRTAKRKYEDERRTFLSEWEDLYFFVERNGKPFCLICQTSLSHFKASNLERHFTSLHSAVAREFPKGSELRKHKV
KTLKGQAEKQTQLFRKFTKHSETVTLASYQLAWNIARAKKPYLEGEFVKKCLSDAVAILCPENENLKRSVKDLQLSRHTV
EQRISDIDNSVETHLLSDLQKCQYFSIALDESCDVQDKPQLAIFVRFVSEDCTIREELLDIVPLKDRTRGIDLKETLMTV
VEKANLQLSKLTAIVTDGAPAMLGSERGLVGLCKADDRFPAFWTFHCIIHQEHLVSKKLNLDHIMKPVLEIVNFVRTHAL
NHRQFKNLIDELDEDLPSDLLFHCAVRWLSRGHVLSRFFELLNPVKLFLAEKHKEYPELHDPQWISDLAFLVDVLHYLNG
LNVDLQGKLKMLPDLVQSVFAFVNKLKLFKTHLQKRDYTHFPTLLKASGQEAEVVKGSTARYATLLENLEQSFEERFSNL
RQKRQQITFLINPFTAESGCLKAPLVEDEAASQLEMIELSEDDRLKSVLREGTVEFWKIVPVERYPNVKQAALKLLSMFG
STYVCESLFSTLKLVKSKHRSVLTDTHVKELLRVATTEYEPDLKKIVETKECQVSH
>hAT-11_Crp_tp#DNA/hAT-Charlie 307-2149 via tfasty with HAT-2_DR_tp, 3 frameshifts and 2 stopcodons. [Crocodylidae]
MDHFVTKGEKHTTQAEESAAAEVPAKCKGxKYDKAYLKLGFTWSRSSDAPRPQCVVCAEVLANNSMWPCKLCRHLETRHP
TLVSKPVDFFSEEAQxVNRTKKKVVEVYSTVNMKATEASYRVALRIAKAGKAHNIGEKLLLPAAKDMCLVMIGQNAASQL
DVIPLSNDTVSHCIAEMATDVKEQLLASVHQSPYYSIQIDESTDISNAAQLLVYIHFATATELKEEFLFCCPLPTQATGE
ELFKLLNTFVQDTGLDWGHCFGICSDGAWSMTGRHSGLVTTVQEVAPTATWNHCMIHRQALAAKKMPEELSNVLSVAVKT
VNFIKLRLVNSRVFGILCEEMGANFTQLLLHAEVRWLSRGKVLTRLCELRDEVRIFLAGSNSPLLQYFSDTWVSLLSYLA
DIFERLNSLNVSLQGRDANVFVAIDRIAAFINKLELWSSCVQQGSVCMFSTLEDIVQQCGDLSVDSIQDVIVQHLGGLQE
QFHEYFPEVGKTKCNQWIRNPFTFKPIPTDMLSSKEEESLIDLSSDQELQQNFTNASRNFWLSVGSEFPELTHRALKALI
PFSSTCLCESGFLALTAIKTKWLSVEDDLRLFLSTLQPRIPLLCAVRKQTHPSH
>HAT-5_SM#DNA/hAT-Charlie 578-2491 [Schmidtea mediterranea]
MSENKKRKTEASSNRPFQDWWTDKYGMMKSNNNALCALCGNTVVCRTSSVKRHYETTHSFLLSKSDSEQKEYIARDVKNK
NLQSNSFTTFLKHTNYLAAASFEVSKTIATHSKPFSDGDYIKEAFIKCAPHLFEDFQNKEQILKRIEELSISRNTVKDRI
LRMHKNINIKKINDIRSAKLFSICLDESTDVTSSARLSIIARYAKGEKIVEELLSLVSLSAKTTGKDISDAVIKTFQIAE
IDTSTIVSITTDGAPSMIGRQAGFVSLFQEHVGHPIINFHCIIHQEVLCAKSGLAAFDDILSIVSKIINFIAARALNKRQ
FQLLLQEVGSNYHGLLMYNHVRWLSRGFVLQRFVECFDEIIMFLNDKKPEFPELFDNNWTTKLMFLTDISNHLNELNIKL
QGPGKSIDVMFDIIEGFESKLVIFKRDIDNNNFKYFPLLKDHLQKFSIHGVYEININFYSQVINDIQDSFAKRFQDFKKF
QPLINFIKYPDKFDLETAKMDQLDWLQLENLEMQLAEFQSSSIWKLKFIELRQEIENNEKKRLNEEEYENMNNMLLKTWC
SLPETFNAMKKLSLAILTIFSSTYSCESLFSIMNNIKSDVRNRLTDECGEACISLKLSNYDPDIDALSRNIQQQKSH
>TWIFB1_p1#DNA/hAT-Ac 14-529 Doubtfully translated [Oryza sativa]
MGRAKPGRPKHDRTVEGPGPAQHAGLWAVPARPVYPVPCLGRRHSPWASTARHVYCRGLARHGTAREHGTAREQPRVGTP
RTWRQAAEPPRAAAGPGGGKRASLRSLVARGKRRRDVSLGLGGWVALALTASVTPCLVGSSRDGDRRLSETPYGGRTASQ
TTNARVPRVPNG
>hAT-3_PTri#DNA/hAT-Ac 263-2570 via genewise with hAT-1_PTri, 1 intron (534:644), 1 frameshift & 1 stopcodon [Puccinia triticina]
MPRSTVIHDSSNDEGQSQSQDIRVAKRSEPETPSSQQPQVTRTQTRRQPPADDGPPPPDSQSESQEAEGSLLKKRKLTSK
VWAHFEKVNEGGVSKAECNYCHIKLSAQLxxGTNHLRRHSERCAAENGAVVQPRQGLLSFTSSQTTSNRVWIFSQEKTRE
KFCKAIIEHEYPFAMADHIGFREFMESAQPNFTMPRRKAVXSDCLSIYSSMKNIEMAKMAKSSMISLTTNMWTALDLTGY
MVITAHYITKNWELSKQIISFRPLPPPHSGHAISDRLFQVVNNWKIINKLAFVTLDNAANNTAAMIRLHQLITDRSATSS
TPTPTSPYFHVRCLAHVINLVVKDGLKVVGTAVERLRTSVHYIHGSSSRMDAFEKALVAVNLDEKMKHPSKDVPTRWNAT
FLMIESLIPCKLAFQQLELKDNKFDSCPSEPQWEELNVIQQFLEPFYQGKCYFLYFxCCLTSGRAYELIVLFFSQIYYPA
TVVLSGSQYPTINHAYRAMIAIEKEISAYIKPPATANEVHTRLSEMVIPMKQKFDKYWEPXKNLTAIGLVLDPQYKIQYL
RYSLDQQGLPPSEADSFLGKVRSALLSLWNQFVPPPQAVPEPSTPANPTGKVKKIDEDLSGFNQYMAGTMSGFQANAPGA
ELDLYLEEQNVINNGDDEFNVLCWWEGNTPRFPSLSEFARIMLMIPMTSVASESAFSTSGRVLDNYCMCLNNETVDALLC
TQDWIKASRIEH
>hAT-3_PTr#DNA/hAT-Ac 1552-3720  [Populus trichocarpa]
MENLQNQNASSTGTTPTSTNAPTSNTNPTSTTAGSTTDNKGKQPQVLTSRKRNVDDKKKSQIWDHFTKLDGDPKTPRAEC
NYCGKDYACHTIVNGTSNMWSHLKVCKKFPFVVDKKQKVLVLEPKKEEGESGDRNVGTLKAIGYNYDECRQALAKMVIID
ELPFNFVEGKGFRLFSRTMQPRFDIPSRFTVMRDCLKLYVEEKERLRTALRGQRLCLTTDTWTSIQNINYMSLTAHWIDN
EWNLHKRILNFCQVSNHMGETIGQVIENCLLEWGIDKLLTVTVDNASSNNVTISYLKNVMKDWPTNILSNEHLHVRCCAH
IVNLIVCDGLKEINVSVVKIRNAIRFVRSSPSRQLAFKKCAEKLHIECKKSLCLDVATRWNSTYLMLEAAEKFEKVFVRL
GESEPRYMSYFLEVDSKGNKKNIGPPSLEDWENARTLVKFLKIFYMVTLRFSGSLHVTSNSFFNELIYMHTNLLQLCKSR
DNLLSGMAMNMMLKFEKYWGCEANQNFLLYVANVLDPRLKLKYVKFCFGELYDYDKAQLLTKKVKDNLVSLYEFYLKADE
VVDDNRHKQDVNDAIDDVEVDVNTLARFKRHLQEEDSVENRNEVERYLVDGCEDPNDDKLDILGWWKSNASKYKILSKVA
QHVLAIPISTVASESAFSTGGRILDQFRSSLSPATVQALICCQNWLHHGPIPTDIRTLMNDFETYENLESGNFSYKLTPF
IL
>hAT-6_STu_tp#DNA/hAT-Ac 547-2777 via tfasty with hAT-3_PTr, 1 frameshift. [Solanum tuberosum]
MTEIGSKISESGASNDTIHNTSSPNEVEVDIEASKKRKAMEPRAACWKHFEKFIDEDGATKAKCNYCGKTYAAATKGNGT
SAMNNHMTKKMCPNFPSTEDYGQKLINFLPSSTGAKEGVISTWKFDQAQSRRALAQMIIVDELPFSIVEKEGFRNFMKVT
VPQFHIPSRRTLTRDCYELYSEEKKLLKKSFKEARPKVCLTTDTWTSIQRINYLCLTAHFIDRNWTLHKRIINFCPISSH
KGDDMAASITHCLLDWGLDNVFTITVDNASSNSVTVKEISKQLTNWGTNIMEGQHLHVRCMAHILNLIVQDGLKEVGQSV
KRVRQAVKYIRQSPARIKKFKECCESQLITCKKSLCLDVPTRWNSTYLMLDTAQHFELAFERYSFYDIGFLDYLRTHDCE
DGTKAGVLTSVDWENVRSMIKFLETFYTLTLKVSGSKYVTNNVHFVEIAELDLILKEMTENEDSNLKKMAESMRDKFRKY
WGEPDNMNKMIFISAVLDPRNKLDYVRFAIGDMFGKTIGEPLADAVDKYMKALFDHYVKKSSKVSLFSSSSPTSSGNSSS
ISSVSGDDNFQKRGSMRTKLEFVRHKVVSGSSSSKSELGRYLAEDVEPETDHFDILKWWKFNEPRFPILSEMARDVLAIP
ISSVASECAFSTGGRILDPFRSSLTPKLVQALISLQDWYRSEPIPINVEEDLEYLELLELGKNLIFCVHYIKNNFLFMLL
ISNKFFHVFVDMAHSGNESSIVDV
>HAT-16_Mad_tp#DNA/hAT-Ac 1863-4250 [Malus x domestica]
MTNQSTSHGFCSSVASVSSSSPSSLPSPTPSPPTQTQSQPPTPPQPEPPIPPQAQSPTQPSGIPPLPPLGNSKRRAKVWE
HFVEYDDIENIVKPDGTKETIIRRRARCKHCSTTFAANPSGNGTSTVTKHIEGGRCKSYPGINQDKRQKTLSFDDGVGTL
MARGNTKEDCIKALVQMVVLDELPFTHVEGRGFRFFCSVVCPHFYPPSRRTLARHFVLMSDEMKAKLKTELASHRVSLTT
DTWTSLQKVNYMVITAHFIDSNWKLHKRILNFCVIANHKGNSIGKLLEVCLLEWGLENVLTITVDNASSNKVAIDYLKTK
MCHWQNSRMILEGKHMHVRCCAHIVNLIVQDGLMTLDKSILAIRNALVYVTSSPQRVEAFRSCVKKEKIECKGLVFLDVP
TRWNSTYLMLTNALKFEKAFVRMGDDEIAYLSWFGEDLPGEEERVGGPSNGKKRYGPPNMEDWSNAAIFVNFLKVFYQMT
LKMSVTLHPACHSTFSDLLAIDEEIVDLFVEEDMLLTQTYTSLILHEMALSMKAKFDKYWGDLVKVNPFLFVGLVLDPRY
KLGYVPHILKRRGCSIDEAMAKKDEIKSLIFKLYDEYVPSSNQPSGSSANSCSNTTSTTTTIGGADPKQHGRGEKRAEMD
ESWIKEVEASNAVLSDHEFDRYLLDRNEKVEVGQDFDILNWWKLNGVKYPVLALIAKEVLAIPVSTVASESAFSTGGRIV
NSYRSSLTPLMVERLICTQNWLMSDNISILDDETILEDIEFYEALETGMNIYFSLLCFCFFSCFVACLLSYFLMSS
>hAT-7_DR_tp#DNA/hAT-Ac 256-3028 via genewise with HAT-1_NV, 1 intron (1222:2149) [Danio rerio]
MELVGKKNATSPIWQYFGFTPDEKGEPADVTQAVCRLCSKVVPVKGSQTTNMYVHLRSRHPAEAAKLAPREGTISKDRSQ
PSIIGAFSKSTKYKRNSERWAQCTAAVSKYIAKEMVSYHTVEKASFKDLLQTFDKQYELPGRKYFTETAIPNLYNETRDI
IAKDLKAANFVALTTDMWSSINMTPYMSVTVHYISEDWKLEAKCLETTFISENHTAEVLAEALSDAMQDWDIEPSKISCI
TTDNGANIVAAIRRLGWPWLNCFGHNLNVAVNYSLQKEKTKTDRALGICRNINGAFSHSWKRRQELRKAQEQLNLPQRML
ITDCTTRWGSTYAMVVRVLEQLPAIKRVFADDKSRRGTLPNVTWQDIAVLEAVRDGLKPVAEFTDILSAENYVTVSSLLP
MLQLTKDILKEEETDVEITAGIKRRILEKLDSKYDDSTLQLMRKSTLLDPRYKGDHIDAAQLDVIKSQLEVEMVEYWNMP
PVPIRVEEEEEEDAAGTSSSENQPAKRIKTLGRLLGRAKPSVSTSTPVDQRAKSEITSYLQEEVIDGDDKPLDWWKENRR
RFPLMANLAKKYLCVTATSTPSERVFSAAGNIITPLRSLLKPEKVNQLVFLAKNL
>Transib-4_DAn#DNA/CMC-Transib 478-2520  [Drosophila ananassae]
MCNINCYYLLAFKLWYFLGTMSVAKRVLFLVWHSEVIPTKKFAAMENFVFGTVLKNITFTLEEQSEIGKKLRNFISRLIV
KWKDCGRNKDFFETKNQEWLDTPLVLMEISXLKNVGRPQKDLADCCKKTQVNKLSDLTEDIPSDALLVAASSSLYKAGRR
SASKLVSMVNADEELTGNIMKTLTTPQRLPTKFSDEKALALFVDVGHTKYTWNLSKRAAKGQNADIYPCYDKLRCAKKKC
YPSVITVTDHFAEVALQSLVDHTIARIIEAHPESFPTHIENNKDIQLTATYKWGCDGSSGHSTYRQKFDDFDGNMIDQYL
FSICIVPLTVQKELKVLWKNNRPSSTRYCRPIKILCEKESAELIRRESEDIKSQISNILPTLLGGFRIDHQFHMTMLDGK
TFSVISESSSQTCGICKATPKNMNDLNLVKSLSINENLFEYGLSSLHAWIRFFECVLHIAYRIPIQKWQARGVDKDVVDE
NKRIIQQKLREEMHLLVDIPIATXGSTNNGNTARRFFEQPNLAARITGVSYNLIHRFSVVLRTLAXCHEINSDAFRSYAL
ETAELFVKSYPWFYMPSSVHRILIHGADIISHFCLPIGMMSEEALEARNKDFRNVRESNTRKNCRKNTMEDVLNALLVSS
DPLITSLSNGSAISSTKKIIMDDDVKRCLLKSNKTSGYASL
>Transib-3_DBp#DNA/CMC-Transib 549-2635 via tfasty with Transib2, 1 frameshift. [Drosophila bipectinata]
EYEFRRLTLLEIWESNGRDASALKKWILEKCNVDDVTKSQDNEIEEKTNTFISHIKKYLPKCNRMLSRFKVQHSAWLSQT
IIITIEQQLTDPSPSKMGRPKLNNEQAGIRLKRKLANDLSSEIESTDHLLHAAFVSAKRAREDHLLNALKGVREQQTGNA
TGTLKSQTIIPLTPDEALAFLLENGLTKQQYINIHHVNKVRGCEIFPPYSSLQQVKTICRPSQIEISESLAQVSMQNILD
HTSERLLVMLKDVISQMDDVSYCTLVASYGFDGSTGQSLYKQKFQSEEPASLDLSLFVTTMIPLQLIDANHRIIWNNRAP
QSVRFCRPIKIEYAKESHEKILQEKECLYVQVAGLKDFIYRKEGKEIVITYKTQMTLIDGKVLNALTGTSSTQCCPICGA
NPTKLLKTTDFLSECFKPRHETLKYGASPLHAWLRFLEFVLNVSYRLKIQKWHIKQADKTEFMSRKKEVREMMWTKMGLH
ISIPKQNGNGNSNDGNTARRAFSDYGMFSTITSFDKNILYNFYVILITISCEHSVDVEKCKVFCENTFLLYINKYPWYPM
SPTVHKILVHGWQIMNSSLVSVGCLGENASEARNKFYKSDRKSHARKNSRLNNMADVFYRAMDSSDPLISSICLSERQNK
FRKKNLPPEVKNLLKPPSVPNCKIISQMENVDLDSSNESDDNLYIILDEEEQETYL
>Transib-6_DBi#DNA/CMC-Transib 526-2584 via tfasty with Transib1, 1 frameshift. [Drosophila biarmipes]
KNDLCPATYELPHAALLEVWEKNRRSEDALRSYIQTQLYGEQFDETLNQQISTKIKCFIGYIKKHLPKCYRIMDQFKKKH
SLWLAGNMSLSVCAKICHRINEVAKNKLASELAEENNNSSSLLLHAATISARKSNENNMHFVLKAASTESVGQLKEKISK
TDSSPISSEKALSFFMENNLTKQQYQNIKKLNKQQGCDIYPPYSKIVEEKLKCRPDGIVCSENEAQVSLQNLLNHTASRI
LIMQEEVCETLTDITQCLLIFSYGFDGSTGHSLYKQKFNITESPTLDDSLFVTSIIPIKMVDQAERVIWLNKSPQSTRFC
RPLKISYIKESTSLIINEKENLDTQIKNLNVYMHSYKNSEISVKFDGHLTLIDGKVLNILTGTKSCQSCPMCGAKPTQIL
EINDFYSKTFDMKPNTDQYGISPLHAWIRCFEFILKLSYRIELKKWHVKGIDKDKLAARKQQIQNSFWKDMGLHVDKPRQ
NGMGNSNDGNTARRAFPNSKQLSSILGVDHHLIHRLYIILIAINCNYPINSEKFKLFCFETFTTCMSSYPWYPMSPTVHK
ILVHGYKIIQGSIVPVGSLGEGASEARHKLFKADRKHHARKSSRIDNMSDVFHRAMDSSDPLLSNLRITKGQNKRKRLPA
EVIYLFEEPILNEKDKDTSVSSSEDESDYDNESDCLEIYLEEEESD
>Crypton-1_SP_yr#DNA/Crypton 546-1901 [Strongylocentrotus purpuratus]
MAELETLPRFQLLDDDQMRDLIDSADSKNTKNSVKFSMKIFEDFLQVINTDLDSVNKLSNSELDNVLQKFYAGARRKNGS
YYMKKSMLAIRFGLQRHFLNCNKIDIIKHEDFSNSTRVFKCFSAMLKQEGKGVVTHKPAISAEDMDKIQGSLDLDDPVGL
QDKVFMDVMLYFCNRGRENLREMTLDSFDICDEGGKCSITLKDTLTKNNRADKLEKSQGGVMIPTNGPRCPVASFLRYKD
KLNPQCKSFWQRPANAQAKRELKSNPSSSDQWYCNAPLGKNSIGDKMKTISSRAGTKAYTNHCLRATSISTLQNAGFRDR
EIMSVSGHKAETSLKHYAMTSSTAKENMSHAIAAAVDPKSVPSSSNIGHGIAAAVDPKSVPSSSTSTGGQRSESQELREL
NDIFNEITNNPENFPRTCNITTSSHAHVSTSQQVQAPTYHFNNCTVNIFNK
>Transib-17_HM#DNA/CMC-Transib 1043-3104 Via genewise with Transib-6_HM (1 intron)   [Hydra magnipapillata]
MDRRCLMNYIMENNLLQNDDLHAKILSFVSQSNFEESNDNLSIISKFIYQAKNKWKKSNRTSAVFEKRYKVWLNQTIFDC
KKKKSKQKPVVCGRPSILFEDASVRTKDRIIKELLSKYNLNELLYAASKSLKRDKRFIEAKVVKKIYNKELSTESLTSEQ
SLALVLDANLSKETYQHLRNNALPFSSLYPSYHIVKEAKNKCYPENIQVSDYSAEVPLQALLFHTASRICSAYSVVLNSP
VLKDCTKLFIIYKAGFDGATGQSVYKQLSDVSSELHTDESLFITCLVPLELYCFKDDKKQVVWRNPKPSSTNYCRPLRFK
YRKESNEVILAEYESIMASIKEITLSVVPVLLEDGTIKEVEVQHIVNLTMIDGKIQTIISTATNSYQCCSVCGASPIEMN
NLSLVVQKKTLEGNIKHGVSTLHAWIRFLECMLHISYKMPIMKWQARNQDEKNIVKLRKLEVCAEFRTRIGLVIDQPRIG
GAGTSNDGNTARRFFQQYDVSASIMNIDVDLMKRLHIILATISSGYEINSSKFKTFCWETASLYVFLYPWYPMTQTLHKI
LIHGYEVIELFTLPLGMFSEEAQEATNKVFKIFRENFTRKCDRKKNNIDLFHRLLCASDPLICTLRKKIHNKKKSLPSGV
LELLQEPTI
>Transib5_AA#DNA/CMC-Transib (fragment) 2-1030 [Aedes aegypti]
KQFSSKKPFVLPNSIELHLPSTSGGSKGRKKIPFQDSSDCVKRRKTAMLRATHNADELSYAATMKLREEGKRAQASVLQM
ATQSSPSHVAHLLNTSKISAKFDIVPYTPDEALALICNAKLTLSQYKELRINAKDRNADLYPSYKKVLEAKKRCYPEDAA
ITINDTEMDIKLQALLDHTAHRIVLANSDNLINFSDEELKYITLITKYGFDGNSGVSQFKQTFTGDDGTKSDGSIFITSV
VPIQATGHSKTLFKNPRPSSTRYCRPLRIQYTKENTELILAEKAYLDDQISALKPSTVEHMGRTIIINHKLLITMVDGKV
CNALTSNKSSQRCLYMWCNAFAD
>Mirage1_CB#DNA/CMC-Mirage 2325-3161 Fragment. Mirage1_CB must hav a multi-exon coding region (e.g. there are matches to the mirage protein from 1049-1559), but genscan is thwarted by frameshifts and stopcodons [Caenorhabditis briggsae]
ADSGIYEVLSCIQELLYHLADVNKLFGNTGLLSTFSFESFYQFSLCGYSTSITRFFLQNACTKFVHYFHFINPQPFNKFR
FLLHTSLRREIVRRSKPLGTESLKRFLSLTPDLGSSHVTWDGRIRDVQKIDKENIPIESVLYSTMYLPLGSLISEYSSPQ
TNNDIVFASCKGRKTCFRFVAAVVTTSLVGALVEPIEAVSEDRKLMDLRKIRNSLSNADFYYYSEMVNQLINYEGLVEGS
LSGRREVIPVDSILGVACYVSTESSSIFVQANGAYIHN
>OShooter_p1#DNA/CMC-EnSpm 4447-7122 [Oryza sativa]
MAPSKAWMGLVDDRLNHEYLEGVEKFIDYAFSKLDGVQVIRCPCIKCCNTYSLPHHIVSSHLKAYGILRSYTFWYHHGEV
LAEQENDIEVDEYDSQEFNGEGYNGMQDLMEDLFPQCNTPGGDEATHESTDQGPEEEPNTDAAKFYALLDKYNQPLYEGS
RISKLSALVNLLHVKNLGKWSNKSFTALLELLRKDFLPHDSTLPNSYYEAKKTIRELGLSYIKIDACKNDCMLYWKEDID
AESCKVCGSSRWKEKHTREIKHSSAGKKIPHKTMRYFPIKPRLQRLFMCRKTAAYAKWHKECRVDGGVMRHPADSKAWKE
FDKIHSSFASEPRNVRLCLASDGFQPFANMRTSYSIWPVFLVPLNLPPWMCIKQQNVMLSMLLPGPDGPGDAIDVYLQPL
IEELIELWEDGVDTYDSSTKTNFKLRAALLWTVHDFPAYGNISGHSTKGKLACPVCHKETNSMWLKKGQKFCYMGHRCFL
RRSHRWRNDRTSFDGTKESRGPPMELSGDDVLKQVQDLQGIILSKDMSKKTKVSRSDRGDNWKKRSIFFELPYFKTLLLR
HNLDVMHIEKNICDSIIGTLMNVKGKTKDNINTRSDLKLMNLRPDLHPVDDGGKVVLPPAPYTLSPDQKKALLSFFKELK
VPDGFSSNISRCVNMKERKMSGLKSHDCHVILNHILPLALRGLLPENIYEPLVELSQFFKKLNSKALSVEQLEEMDAQIP
VILCKLEKEFPPSFFDVMMHLPVHLAREALIGGPTMYRWMYLFERQIHYLKSLVRNMARPEGSIAEGYIADEFMTLSSRY
LDDVETKHNRPGRIHDTSIGNKFNLSIFSCAGRPIGSRKTRDLDMLESEQAHIYILRNCDEVQAYIRYPLIKMAFIYVMF
LTIHFTSLCNF
>Transib1_AG#DNA/CMC-Transib 1539-3665 [Anopheles genus]
MIEILLFNDFFNCVQHAHLIFFPLIQNVTQITNRELVLQFNFQNSAKLNVENAFRFVCETLESSDIDEDAVKQKLNLLER
RAKHLWKKTNSDRNKFDRANFAWLNTQFLCDFKREKITIIQSKKLFIELTNRQKRRRIAQMSSSVKCESVDEALMFARKI
ATQQKNTYVVNALTNMINCSTPAMKSGEEALSFLIEGNFSKKQYCIIRKECPSKFRSYMEILKAKKTCSPSAESLHVTES
SVKVDLQSLVHMTTKSIVRMEKDKIFAYMDSRKLNHLKLILLMAWGMDGSSGHSQYHQNYSNETADDSNVLITSLSPINL
TVEGDSSNEIMWSNLTPQSVRFCRPISMIFAKENRDLVINKKSEIEAEIEALRPYLFETENREKSVIVEFRFVLSMIDGK
ILSYITQIPTSCCPICGSKPTEMQNVKYIDNGFQPSPGSLIHGISPLHCWIRVLECILHISYRLDFTKWKVTAHYREAYN
NRKRIVLRDLFTKFGVKVDQVRAGSSGTSTTGNVCRRIFSNPKLASEALGVDEDLIRRFRNILIAINSERPFNAETISLY
CKDTYYKFINLYSWYYIPATVHKILAHAGELILNTPVPLGSIGEECGEARHKIFRKDREYHARKCTRESNLVDVFMRAIH
SSDPFISSLSLQNRVQRKMSDNYPEEVKLFFEFEQLNSNENVPPLEESFEDIMDTLDKMNEPLVQDMG
>Transib3_DP#DNA/CMC-Transib 432-2474 [Drosophila pseudoobscura]
MAMKNTKLFEIFRNSSTSNEFVETVLNELNLVSDSPEQHTSIRKKIMCIHFSIKNKWLTSHRKVESFNSKYASWLIGNSL
LYDGPSTSTGRAIGRPTKTLDKCSDYTRKRKLVDATCHIDTDHLSEALSIKYTNNKENKKAHITKAVSKASPVRLDRIKK
SILKPPKLQPKSYTDEEALSLFSDLGMSKEKYSILRYSLQQHQVYVLPEYKHITDAKLMARPEENLVTVESAVVKLQDLV
QHTTKRLIKSLPHHQIESLPQNLTLISKWGCDGSSGQSEYKQAISTDDKTITDSNMLMASLVPLWLKSDTSEYWRNPRPS
SAHYCRPILFKYAKESSELIKSTVSDIKNQISNIRPSVHKVNEEKSISVNFEFFLTTDGKVLNELTNTKSTLKCAFCKKK
TQKEFKNLDDSIIEEENLEYDISPLHARIRCMEFILKLAYTIPREGESFDNSTPANEIQKTRKKMIQEKILDKLSLKVDC
PKQGFGNTNDGNSSLIEKNEITAEITGVDIDIIKRLGVILNILNCKEKINTRKFGEYASKTAELLLEKYPEKKLTPTLHK
ILAHGQILIEHQSLPIGEMSEEAQETRNKDYKKYRNMNTCKTSRIKQNQDLFNMLAASSDPYISSIRYVRSQIKSASSYS
SEMISLLDIPPTKQEVEDYFTETKKFNQLSKYTKNCFFLF
>Transib2#DNA/CMC-Transib 534-2615 [Drosophila fruit fly genus]
FYIGKFEFRHSDLLDIWRRNNRQISYVSDYVYSAINNNNLESKKTEEIDKKIVHFELFIKRKLPECNRQLDRFISKHTKW
MASKITILVSDFENSKTPQQMGRRNLSYQNAGERLKRKLASNLASESDHDTSLLIHAATVSARKECKRDVAFVLKETLKT
PEFPSESRMQIQWQKPTPLSPDEALAYLLENTLTKQQYISTRLLNKSHNSDIYPPYNEVIEAKLQCRPEGIEVMENTAQV
LLQNLLDHTAQRLIKLQSDVFKQFPDIFKIKLICSYGFDGTTGHSAYKQKFETEALGTPISDQSLFVTSVIPIQIIDSFN
RHIWINRAPQSIRFCRPLKIELIKETAVHIMMEKNQLDNQINNLTPFTYKCDETRDIEVTYEMHMTLIDGKVLNVLTDTK
STQCCPICGVSPTQMLKITNFSSETFAPKVKALQFGVSPLHAWIRFFEFVLNVSYRAEIKKWHIKGEDKVKISIRKKYIQ
EEMWREMGLRVSMPKQNGSGNSNDGNTARRAFASTKFSSITSFNENLLEKFHIILIAISSNYFINSDKFRSFCDITFQLY
IRTYQWYGYQINNSALFPLGCLGENASEARNKLYKRDRLSHARKNSRINTMSDIFHRAIDSSDPLLSTICLKERERKNRK
KPLPKAVISLLEIQSSFKPDPSDKILDSHSDSDSSSDSEIYNVELEEEEGDYF
>Crypton-2_TCa_yr#DNA/Crypton 594-1457 Resembles DIRS1-like Tyrosine recombinases [Tribolium castaneum]
DIGPKSLKHSSEKTFTNFXCKLRTIIILCKRLLLILFLKKINRLLIQVALIFGIAGALRREELYKMKCEDVNDTGNVLII
TVPDTKTHIERRFTVIGETPKHNLNLIDIYKKYKNQRPTNVKTDHFFLQYRQGKCKTQVVGINTFSKIPSQIATYLNLPD
PSSYTGHAFRRSSASLLVDSGGDLMQLKKHGGWKSSTVAEGYVDESMQTKMDSATKILAGTSSTPTASDLSTSVYNPTVN
STTQKQVGNKTTNVDEVNSLSKSIVCSSLQINNAQSCTFHISINKDI
>CryptonS-3_PR_p2#DNA/Crypton 2501-3007 Contains CHROMO domain also present at the C-terminus of retrotransposon pols.  [Phytophthora ramorum]
MSTINAIVTYKEFKHLCITFAKASKLRIMDVSIRMLRNSLVQTVGSKERIPEXLRVIFMSLRDKCKDKNDIKKRGLVEID
DINEWLTGPSDGAHAQINGVYGVKRLLQRVVIGRKAYYLVDWEPTLEPRENISKELIAVFNRERRALVRKTYIEDEAEED
NSFNNSADA
>CryptonS-3_PI_yr#DNA/Crypton 208-2307  [Phytophthora infestans]
MYMPMQIVGQTRTTPIFAQHRTEAMGLDELQPGNTLRAKATALSAFKKFLKAEGVAEEYVRKCIERDVSGRCFVSVMDKF
GMHLAFSKGKKGKPLARNTAMQYYRQAKLWLLDQFPQHRASLETRLLKMGKTLDSFCLKREGGGFVNKAPPCTKSDLKQM
LVYLYTNASCDTDYQDAALLCLLWYLFGRASDLSMLRKRNVSVDAGGVLFLRLIRVKTSEEQGLSLFPDEEFLTCPLLAL
ALALIVQRAPSDDLVGNLPRQETLTTATISDDVSLVELLNAPAAPSTLSVPATKGTPSTPTVYSHVNRVLERIAPAAGVT
KALSSHSFRRGGAQHANGSEGLTDRWIFDRGSWNMSTTNKGFNYIFNTSKEDHKVAKVLAGYEPKTKVKLQDLSSFDSQT
LEQIKRVQDVMFMSCSNLATSSFNVNKQVVDILTAAVFRYFPLLKELSHSSPVVTRVEGAVRSGGSTLADLLAWSAHLSL
AAEPCNNKQTPENDTTHQAQQTKEQKIIDHQASVIKHLIDMSKRQDERMDALEAKLNNDPVLTIKRNKPSEKEGEQEVST
PKKKQRRSGATHLHATWFAWYAHEPRWHASEPKRQRSNAKLLVAYMKLFLADGFGLDPSAVSYRDDVLALGLRAEKEALS
FLAQHKIASRGSSSVLKHLQALHKAGALNRQIERHQRLLQSAAIQDPAPGYTQDVVELVG
>CryptonS-3_PS_yr#DNA/Crypton 194-2329  [Phytophthora sojae]
MQGVNTSHQSTAHHSNICPLADRTLGTSMSLQDLAPVNSQRALQTAINAFGRFVAAQGVSMDFIAASLADDESGAVFVKL
MDRFGVHLAFVEGRGGKPLAKNSVMSYYRHVKNWLLDTYPTHRATIEKKLLKMGQTLERHCLKRIEGGMVKKAPACTKED
LRILMDGLYYDATSPKDYQDAALLALMWYAFGRASDLGFVVKGNLSVSADGVVFVRLIRVKTSDEQGISLFPDKNSFITC
PLHAIAMALVMQDAPCAQLLDHPHLAASGDESMTAPVDVPLAEALVACENDDTPSEPPQKKRKLPEENMKIHAYVNRVVK
TASAAQAKAVPTANLTSHSFRRGGAQHANGDPLLSAQWIFDRGSWNMTATNKAFAYVFNTTSEDQKVARVLSGWDSSKKP
PVPTLSWFDSASRQQALSLGNLLFQPSVCTQDPEKKLNARVAEVLTAALIQHFPEVLERYPMCPYATRMRECLMALGLPK
AQVLAWSSELQAKVAQKDLEESQDDAEAFTREEKLINHQNCIIGELIAMNRALTERVTQLESQRDVGQGDSSTSLPAPVV
APQSHCEDSATVSKSCGSKALPKGPAAIWFEWYAKTPRMWDVCADRQKKSAYKHTVNYMKLFLPNGFALDPSAPDYTDQV
VRTGIEAEAGMYRFFEEHGVKSKRGSAVLKQLRKFFRESKLNSLVDAYRARVAVAGVTDPAPKETQELFTRK
>CryptonS-6_PS_yr#DNA/Crypton 361-2490  [Phytophthora sojae]
MSLAAFVPTNTQKARNTAVAAFKRMLEEEKVSLEFVEASILLDASGKRLAATMDRFGFYLATNEGKKGKLARNTATAYHR
NVKLWLFDKYPHLRVPTELILLKQGKTLDKHCMKREKGGLINKAPPCTKEDLQSLVRYVYSTARVHADYQDAALACLMWH
CFGRSSDLGYIQKQHVSVSADGTFYLRLLRVKTSEEQGLTLIPDKSDFLTCPLHALAIALATQDAPCAALLSQLPDLVAE
VAVPLDEGVPLLELLEAEPASLDVAVVPTESSLPSMLAAGNVSSVPPPQTCPDTQETSTPAPTEARTGEVKRGEDSVQAY
VNRMLKRVAEPAGATPDLTSHSFRRGGAQHANGDDRLAAQWIFDRGAWDMTKTNKAFAYITNTAREDRKVARVLSGWAAD
DVPAVIDVATLDHASQERLGRLQGFLFNSCTGLKQQRLNVSTKVLSVLTAYLVRYYPQLKELSPAAPIVTRVEESLRAAD
IPIGDMLAWSVALDSEAAPPAQEQTQTQDASQHHCPSIDHLLAVIHELIASNKALAARLTIVEAAQMKAKEPRRPAEEDQ
AKESLDQEPKPKRRKKQVTHLSAAWYEWYTRVPRVWDCSDRQKKSESRHVVAFMKLFLEDGFTLDPTVADYKDQVLDAGR
RAEDAVLDFLKSRNINAKGAGSVLRALRPLHKCGVLDKRIAAHKRLLATGRIQDPAPADTQDILALARQA
>CryptonS-4_PS_p2#DNA/Crypton 2511-3669 via genewise with CryptonS-20_PI_p2, 1 intron (2773:3144) [Phytophthora sojae]
MVHLSQKKFKRAVRAFIRREFPLAYVTDEALRYLRHELRDQVTEAPSPRGPLFDVLSLLQQQTGRRIEGHHVLAWRSSRR
PSLRQLPKKVTTAAIAVAEEKVTTAASSADAAQPLADSGDDFSDDDVVWIPAPXVYLSQLAPVSVLNADDGRDDSEASET
EWVPTENLAAPPSTAPQLYNIRAITNSYMRNGKRVYLVEWEQTEEPATNLPRNMVAAYNRRRRALVRRTFIEDQAGHGRG
RLRNSEPAPERRRRRPLRRLRR
>CryptonF-6_PI_yr#DNA/Crypton 26-2042 via genewise with CryptonF-1_RO_yr, 1 intron (966:1087), 4 frameshifts and 3 stopcodons. [Phytophthora infestans]
MAANTYLAIENSAAEQSAAQxVVVDSLKCCTRNTRRSYEPKQGEWARWCNGRQFVDGSVVTEGKILPFLEEVVRPRGSRR
KQDGTVIXLSAEGIEWYVKALVDPYSTQKSLGIGSHPHPCGKALSEYLRTHRRERATRRREEFDDRGKGTVQDTYSVGQL
RNVSAYFMXVNNGRALHDRVDIRFGHALMARGETTRELQLPDLFSRELSIXGPTKCVAALAVIEXGKMNQFGRIEYGGCI
RYRDVILCPIGALAIYLLWRFHVVGETFPDMRVRSSWYNIQLIDGKIKEREISYSAQASGPKKALKACGVTSKKVTHIRT
TSSCVIAKANGASEASIRRGGRWSNEKVEGCYxTTLPREVVRALAGFNANXGAFFLPRAESSIPETLRGAVLSWIDTLQP
LFDKGDIHDIAGQGFLRLLAYLREVVLQDSVLLHIAxPTHPIWKHALFTRPDYHVFANQQLARLQKTSDTGLIPTVRAAL
PILTNVAESSFASTVLRLTAIENLYALHTRLSSRLSADDFSXVLAPGQAGQSSEQAEQLDGPVTYRLARGLYSVIAVWTE
YTKGVAGCTPVQQLEARHGAKWRSSDSERQYFKRRKVFYDAIQFLAASEHAPPEIIAQVLETKRKNMSLTLDAPKEKAER
QRRGDRSLSKCIVLSLT
>CryptonA-3_SK_yr#DNA/Crypton 33-1331  [Saccoglossus kowalevskii]
MKTKREVAVFNDWKKSMTQEKRDLKDIPPSQLDALLSQFYLGIRKKNGDEYEPDSISLYQKSIDRYLRDNDYGVSIIRGD
AFASSRRTLAAKRKHSKASGFGNLPNKSQPITKDQEEALLKAGQLGVDSATAIINTVWYNNTKLFGLRGNNEHRQMEWGD
VVLQSDENGEFLVYNERLTKTRHGEPGNTRSFAPKAYATPKTPDICPVRAYKAYAAHRPDRMNCSSAPFYLGIEYVPCTI
AKGIWFRNQPMGINKLTTIMKSMSKAADLTGKLSNHSARKTCVQRLLDAGVPPNTAAQLSGHKNVSSLNRYSVPNKDHQR
QMSNILSGNQDSFNPRPASNITNAVVACSSATTAVDESHPVSVVPQLHGMFANAQICGGTFNFNINCVSQSSTSSSGSVV
APTKRPRVIYXDSESDXTPDYFIFIQTVTRVLH
>CryptonA-1_SK_yr#DNA/Crypton 225-1232  [Saccoglossus kowalevskii]
MASKRHAELSPSELDNILLENDSKRTRMATSNAISTFKQYLGSKFGYGEGALETFTATTLDTALRTFYAEVRTQKGEVYT
TKSLQSLRYGIQRYFNQPPMRRNFDLVNGDEFADSRKMFAAVSKQLKSQGKGNVCHKPAILPGDLSKLTTYFSRYSTSAP
VLLHKVWFSIMLYFCRRGREGQRDLRGSHFMVKSDDNGSKYVIQVGSEVSKNHQCDDDGVSGGIMYANNSNPRHCPVRAF
ELYLSKANRRCDALFQRPRDNYSADDDVWFENKPIGKNTLSEMMALISKCASLSQRYTNHCIRATSITILSEAGFNNRHT
MSVSRHRXELRAGYXN
>CryptonF-1_PI_yr#DNA/Crypton 169-2112  [Phytophthora infestans]
MEPPGLQVELEESAHATLDRCREARPANTIRAYAPKQREFKAWCERKGFHETTRYQVTAAKMHLFLQEEVVDRQVRTKGS
ARKVSVATVEMYVNAVSDLYSDQQSRGANSHPHPRNSLIKGLLTSLKRESHAKNKREYADRGVGSLLDGYCTTNDLVSIS
RYYMNLNTGSDLRNRMSHFLCHACLLRGESARNLDLPDLFSVILEHEGFTECRALVMIMEQGKTNQFGRREFGSCIRHRN
VEVCPVGALALYLFWRWSVQKEAVPDFLVPERWYDIKLLKSNKDITTPMTYRAHYDATVKAFSALGMRSKAKTHAARGSG
ARMAELAGATESQIRRLGRWNASAMEGCYLSALPREAMRSLAGFPPDRRTFFLDRAAIDPPECLLRDVFPFVETYMAAYM
QQSAPHVATGGFLELLLYLRVVLLQDAVQLRDLHPTHKIWMHPPFNSTGFDSFALELKAKMLTEKSPQTTHLHEVVPDLM
DHLKQQQQQTIAHIDNKINEISTSINHIATAFSRLTSGSSAVRLTVDWGSAQSSTSTPVAASQHAPLPPTYKLVRSIKTV
QQVWQEWTTGIHGGPAVRDLEERYGSNWRNSPAEKRFFFRRKRIIDRVTLVAQQQHVSEAQAVCILEGQRTQSQLTLNAL
SESLKGRQ
>CryptonF-4_PS_yr#DNA/Crypton 108-2211 via tfasty with CryptonF-5_PS_yr, 1 frameshift. [Phytophthora sojae]
MAKKKKAGISIRAYAAASSVTARRETQTPVRQEARLSRQNDSALQMLMEEREQATLQKAIDSRPINTKRKYEGYQKEFAE
WSQSMGFSDGVTVTGSKLHLFLDTQVVGRESKKKKGKVIGASTVYGYVNAIVDLYNQQVANKMNANDHPRTYKVKQLLST
VQAETTSTRKKNYTDRGVGSLLDGYQSEAQFTQICDTFFVLDDLMGRAAFLVSHFGLLRGENIRDLELADMFSQELDKEG
FQPCIALVLLIQHGKTNTFGKLQHVGFMRNKAVHLCPVGAVAFYLFERFHLNSEPFPSFRRSEDWYDIKFLSGRDRNKAI
SYNTHKKSYEAVFDHLGLTFNKKTHINRQQGVRQLEGADVDISQTRRHGRWGLDTVEAVYSAPLAREAIRALSGHPPRAR
LYYLERAIVDPPNDLKQQIFPGLESYKQKLLDGEWECNLAARGFIELLEFLRTVLLQDAAFLFDVLPARLRRHPIFGGPF
QQFRAQALASAQATQHPVEMQLQLAMPVLSQQISTQHAATMQRLESQHLALVDMVKQSQDQLASFLHGDVLYRLLPLSNN
AAGADPSQLPLRDSTPVSTSVNATLQQHSPQLEPVTVPQYNMSRRVSTVRELWTEWHHGLASQPSIEYLEETFGTKWRAS
SKEAKFFSRRRCVINHVPVRSFVNGGLSIDDAIERADTERGNKSIDSYSKWLRSKQHDDLH
>CryptonF-2_TS_yr#DNA/Crypton 370-2580  [Talaromyces stipitatus]
MESISNGLLAEQDRQLELHAKIQLHSQKVAHRIQKNRPAATTRQYDSRQKEFIDFCTKEGFPDGQVVTEKKLVYFLDHYV
INRPIRPSRYLRNRTDSQGAAVVQTLGLPSVKAYTSAIVDLWRFQQSLGTNPYPNPRGHLVGAMIKNHQFDETQRKRTQF
TDRGFNTLQDGYTSENIRAIVRYCWAGWLSDQTRGRKPQAQEAYLRTTVDFLFGHNMLLRGEDRRHLELADLFTLRMDEG
PTPCWPMILMKLNGKTNQFGRLEYMGVVRHKDPLLCTICHTAFYLFHXWEIMHEPVPQFYQRQQWYKXVLFKGSDSEHSF
SYETQLKWINQVFQSIGLNSKKKTHSGRSSGARHAELQGVDENSIRRAGHWNQDSMSNCYLSELPRPFIRTLAGFKPTDQ
GNYYLPRAAIEPPETLVRALWPWIDQWLAWFSPSESNPVELSKLDLPPLPLLVQQGVEKCDQDDLAAQSFLKLLSSFRTV
IIQXAVFLQQEFPGHSMWTHPLFQRSDFQSFSQQIIDLVRTSETPHEIKLRQTIPLVANRITTIGENLEHIIQLNHQQTQ
DSIRAIQSQMDQLFSGEVTFTARLTGSDEKPSTPGNTTSQSTEQNTAHTVVQSLQVTPNPIQDHPPGIHLPNEPSGSPPF
YRMSRTIQTVRELWEEWHVGIHGNPSIQSLEDSYGCRWRSDNKERVFFSRRKVIIDWIQARVSKGILLADAIDEIELMRR
NSQRTLYQLQALLKKGV
>HAT-3_Mad_tp#DNA/hAT-Tip100 889-3327  [Malus x domestica]
MERYYKRKSSSISSDNHIPNSSSPNLDSSNPIPNSSPPIPSSSNPIGGNSTPQQNELKVDLDNLERDPGKRIPMKDYPPD
IRDEVRRAYILMEPFRAKDHDFPFTLHSNKKRRFVDNWLKEFHWLEYSISKDAAFCFYCYLFKVNFEQSGSDVFTEVGFQ
NWKHARACFEKHVGMVGSFHNKAVEAAGNLMNQKTHIETVVVKQSEEARMAYRTCLNASIDCTKFLLRQGLSFRGHDESD
TSNNRGNYLELLQFLADHDEKIKAVVLDKAPGNLKLIAPSIQKDLVHSCSIETIKTIISDMKNARFFSLLVDEARDVSIK
EQMAVVLRYVDKNGKVIERFVGVQHVPDTTSNTLKESIDAFIHFNELSFSNLRGQGYDGASNMKGEFNGLKTKILNDQPC
AFYVHCFAHQLQLALVAVAKDNVDVNTFFLLANNVVNNIGASCKRRDALREMQQKELMKALENDSLMTGRGLNQETSLKR
AGATRWNSHYGTLISLITMFSSVVNVLEMIVDDNTNDSVAEANRLLKDIQSFEFVFLLFLMKSILGITNDLSQALQKDDQ
EIVNAMALVNTCKEQLLYMRNDEGFDLLVDKVLSFCVQHHIEVINMDETYVAHGRSRRNTHKKTNRHRYKVELFFVVIDS
QLTELNDRFNETSTELLICLASLSPNDSFAAFDKEKLLRLAQLYPQDFTKQDLLALEDQLDIYIHSMRSRSDFSQLQSIS
DLAKKMVEKRLHRVFQYVYLLIELALVLPVATASVERAFSAMNIIKSPLRNRMGDQWLNDSLVVYIEKDVFSCIDNETIM
TRFQSMRSRRGQI
>gb_AC206122.1_Sko#DNA/hAT-Tip100 80154-78337 Saccoglossus kowalevskii clone CUGI_SK_BA 001B13 (may be a gene; only 140-400 of Gulliver match other tps) [Saccoglossus kowalevskii]
LQTGKRNPFTEKGGCVNFRTTTLDRHISSGDHVKAVQEIALRADFNTTVQKVLSDNDKAIISAMQTVFWLAKEDIATRKY
ESLLSFLKLQGVETMDKLRVGQNASYTSRQTADEMQDAIAAVISKEIKQQLRQSEFLSVLSDESTDISVTKKLVIYARLI
DDDFTPRTRYIGNVKVKDGTSSTISSSLKTTLLEGNCVKPHQLIGFGSDGASVMRGRLNGVSVRFQREINPFIISIHCIA
HRLALCTSQAAKSVTYLQKYSQILTDIYYYFSRSAVRTESVKEIQSILDDPLLKYKEVHDVRWFSFYSSLETIYRTYGSL
VTYFQSVASTQPIAKGLAKRMTCYEFVATTHLLMDIIPVLTHMSMVFQSADIDIAIVQASIQTTTARIKELGSKTGKYLS
DFEQMSSANGKTYTVNGHNISATTNQKKHFDNIRSDFTKNILDNLEERFPQDTTTLINAFAVLAMRPLSFLPKDQVDVFG
NTEIEVLVNHFGAAQTTEDGTIIERIVDPDCVLREWATAKELVLSQMYPRDKMAILWKLLYTYHRGLLPNLLKLAKIALV
LPVQTADCERGFSVQNKIKTKTRNRLEAERLHVLSLISAEGSSIEH
>hAT-4_GM#DNA/hAT-Tip100 658-3019 via tfasty with HAT-11_Mad_tp, 2 frameshifts. [Glycine max]
MDRFLKRKLPSNEQQSSSKSCESSLQQQRIEINLEDLPSDPGKRIKISAYHPNDRDKIRRAYLQRGPCQPTQHNFPQRKI
GNSLRRFCPSWFNEFGNWLEYSVEKDVAFCLCCYLFRHDFGKQSGGDTFVIEGFTNWNKKERLSSHVGGPNSAHNIAWRK
CQDLMNQNQHIEVAISKQSEQVRDLYRRRLTASIDCIRFLLKQGLAFRGHDESTNSANQGNFLELLRFLAEHNESINHVV
LENAPENHQLIAPKIQKDIVNAAALETTNAIITDLGDELFAIIVDEARDISNKEQMAIALRYVNKKGSVVERFLGMVHVK
DTTALSLKMAIDELFCKHGLSISRIRGQGYDGASNMQGEFYGLKSLILKENSSAFYVHCFAHQLQLTLVAVAKNHIQVAS
LFNLVSTLLNVVGGSCKRHDMLREKQINYVREALGKGEIPSGQGLNQETSLKRAVDTRWGSHYATLINLILMYSSIIDVL
EIIKEDGSNADQRAEANGLLHLLEDFDFAFTLHLMKNVLGISNELSQALQRKDQDIVNAMNLVNITKLRLQTMRDNGWES
LLQEVNSFCDKHFINIPNMEDIFFSKGRSRRGGKAQAITTEHHYRVELFYTVVDMQLQELNDRFTETNTQLLLCVDCLNP
TNLFSTFDKARLIEFAKFYPCEFSAINLVMLDNQLETYIIDMRSNVEFSSLKGIKNLSQKLVETGRHIVYPLVYLLLKLA
MILPVATATVERAFSAMKIVKNRLRNRMGDAWMNDCLVTYIEKDVFNKIDNELIIQRFQNMKSRRGQL
>HAT-5_BF#DNA/hAT-Tip100 1-2112 [Branchiostoma floridae]
MNRYCQREWLETFEFVSYSTEQDGLYCLPCVLFPTSSTREQPTLLVKRPFRNWKDAKNDLQVHGLLENHRNSEARMKAFK
DTMQNPGRRIDLSMTSESINRTKKNRAFLLSVIKCLEVCGRQGFALRGHRDDSTADPLSNKGNFHALLQLRVDAGDVALA
EHLETCARNATYISKTSQNQLLECIKQYILETIVKDITSQPFGPHYGIMADEVTDVSNWEQLGLLVRYTKDQKPVERLLM
FSECEKITGRALCDTIAADLAGVNLDPANCRAQCFDGAGNMAGVRNGCAANFKEIATRAPYFHCASHDLNLALCKACKVQ
DIHCMMETLKAVGIFFKYSPKRTRELEKAVENENEERRAAGRTQLLKTKVKPMCETRWVEKHTCLEDFHELHEPLTDCLE
AITSEEGWDAKARTEAGGLLSQLKRPAFLCAFECALYIFGYTKSLSTLLQGSTMDIIKAYEQVDLVRKELRSIRERADEE
FHQVYLSASEMAQRLGQDMEVPRRCRRQTQRCNVEADTPEVYFRRSIFVPFVDGMVEQLTSRFPQLTAHACRALMLIPSN
VHSLQQDHIQQLREYYEPDLPSPLSLQQELRLWKAQWQGVIVTEKPDSLDATISHQYSNPAIFPNVCMMLQLLMLTPVTT
AGVERANSALRYIKDVYRSTMGEDRLNALILLFVHRDIPLDYNRIIDIYATGHPRRMMFINPLA
>hAT-4_SBi_tp#DNA/hAT-Tip100 563-3026 via tfasty with HAT-1_Mad, 4 frameshifts. [Sorghum bicolor]
MERFFKRKAPEPDTANNTRNSCLDDINWEEEIKYDPGLRKQIDDYHPNHREKVRRKYLENGPCQPRTCNFPVTNIGGEPR
RFVPEWFDEFGSWLEYSESKDRAYCFCCFLFREKKDAGYEAFVKDGWNGFHRKERLKAHVGDVGGSHYIAMKKCDDLLQR
NQHIDVAFHRVSEAAKKDYFTRLNGSIDAARLLSKQGLPFRGHDESKESLNRGNFREFHDFAAEHDPDLRKATGTNGSDN
SRLVAPEIQRDIVECFANEMLHAILEEIGDDVFCLLVDESRDVSCKEQMAVVLRYVDKCGIVKERFVGLVHVTETTSSRL
KSAIDALFAKFKLSLKQVRGQGYDGASNMRGEFNGLQSLIMRESSSAYYVHCFAHQLQLVIVAVVRKHKGVSDFFNMISM
LLNVVGGSAKRRDMIRDINHEEVMKALGCGQLETGTGLNQEQCLQRPGDTRWSSHYKTLKSLVGMFPTIVEVLQVVEKDD
RDWKNRDQASNLLEYFQSFDFVFYLHLMLTTLGAANALSLALQRKDQDIVNAIKCVKATRLQLDELRRDGWDKLLDEVNE
FCDKHDIARLEMEDAYIDPQKPRKKSGITNKHHYEVDCFNDVIDWLVQELDSRFSETSSQLLVCSAAFSPRDSFRDFDVE
SLMSLAKLYPDDFGSGELRDLSHDLGLYIADVRDDDRFSNLNTIAELSQKMVETRKHHRYPLVYRLLKLVLVLPVATATV
ERIFSGMKIVKTNLRNRMGDQHMSNRLICYVEKEEMMKVTNEAVVRRFMNMEGKGRRFDDIRGKVMYFIYRNSFDHIDIL
FTIIFFFLLLSRTPLCYALASP
>Arthur1_tp#DNA/hAT-Tip100  1150-3711 [Eutheria]
MMGRKYPSGSQKRKLKERRLAEASKCQKLSYYNTTETKNSDGQNHENKKKNHDSQENIDNKNDNRRNKEDYENQDTLKQE
TKKQKEDESNSKEKRNLYGQQSTHEGQQQLHFDEFVDFDKYRDLSLWPVTMSNNFIQHCLMKEVCFFKIVIPIIFTENQT
EHTMDKRDVSQTDILKKIKNGQTVMRSWLAYSKTKGCIYCFVCKLFSTRQTLLRSDEFSDWMNILRTLKSHEDSTEHKKA
MFTWITRKSNKNALDQRLEEQRKNIRYYFEVLKRVVAVIKFLSERGLPFRGHDEKWRSSNNGNFMGIIKLIAEFDPFLHE
HLEKCQNEKTNVTYLSKTVYEELIEIMGKRVQNEVVNQINKPDTKYYSIIVDSTPDVTNTDQLAIIVRYCYNGKPYERFL
TFSPTENHLSVTLFNKVKQVLDDCNLPLNNIRGRSYDNAAVMKGEDKGLQALFKNINKYAEYVPCAAHSLNLVGEKAAST
VPEVVDYFGILQQLYVFFSGSSRRWSILNTHANLDFSLKSLSVTRWSAHYKAVQALQHGYNDILRTLKYIFEDSEEKPER
KRDAKSLFKKLIKLEYAILTAIWKDVLERFNKTSEKLQTPDLDVYEGYLLLSSLNLFIKELRENSDKKLMEYETKAIKMS
NEINRNYSDIEKQIVTKKFSDHTKSSNSLRGRDKFRIEVMNRLLDCLIIQLMKRSESYEHIGKRFKFLADLTRNTDIDED
NIKLIIRHYNEDIDDKLVNECRQFKEYLRLVTAQENLKCPEILQLIYERNLIEVFPNLTTILKIYMTLPITSCEAERNFS
KLSIIKNKFRSTMLEERLNYLSILSIENDITKSLSYEEAIKEYAAKKCRKKVL
>158138577_Api_tp#DNA/hAT-Tip100 13054-12207 (reverse) gi|158138577|gb|AC202228.8| 13054 -> 12207 via tfasty with strPur2_34698_tp, 1 frameshift and 2 stopcodons. [Acyrthosiphon pisum]
SRLPYGCLYQSHIATEWSNAEISPTGLNLKNKQTNLRKKILKHKLSISHLNAQKIVDESKKNIMDEKISEIALSESDQTQ
KIFRTAHLISKNQRPYTDMPKLVDLQVINGVDLGRILHTNVSCTQIIDHIASEMRIKLAKCIIENGTKLCILVDESTTLS
RKSMLVICLRCAIGELGEINTFFFDIVELNNTSAVSVKGSMLQALEKYGINFEFLKKNLIAFVSDGASNMLGRKSGVGTL
LKNDFPNIITWHCCNHRLELAVNDTLKEVSGLNHFQSFIEKLYATYHMSPKNTSELRECAASLEKQLLTIGKIFTIRWVA
SSQRTVKAVWNNYEALFKHFSYASTDTCRDSRERAKYNGLKNILTSNNFVHNLGVLYDALIELSDLSIQLQKRDMTLPAA
HKSIQRTIRVLESMASDTRSKMSRSNFCLxKQRIQKYSNLFxNISYKSTNGTIFTSLSNNMKQRLMTTQASNVSSREVNN
EYKVNFKNLIEDLEVLSSENWPDNMDIQYGDESIRRLSEVFQIDQVLSVRGFREYKENEKVNIDIKPLMTVINSIAISSS
ECERTFSSMNVIVSPIRSTLTSSNLSSLIFINCVEPPLEKFDPKSFVKSWILKGKRSATETNCLKRTKKDENESNSYNSI
WNCLNV
>47209745_Tni#DNA/hAT-Tip100 gi|47209745|emb|CAF93944.1| unnamed protein product [Tetraodon nigroviridis]
CKQWLKNCCRQDLASEPPEQLHVLYKLCAKHFEPSMIFHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXELTALVEIPPELGMMSGESVASAMHIDVQATEDLPSCKAKEILKAYFKENLALTGFSINAANVSTDEPVTRG
PQTLNPVCMEKIDKKEILYLSEDLMREEILKSLKLARFFSILLHDVTSIEGKEQIPIFIRSVTIDGFPQKYLIGFLPCDM
DAENLFYILLSELRNKWGLRMEHCRGLTYLVTGNMCQKIRDLTCRILQEFPQVVLSPSDPYAFNIWIIRCMPVPSIQNVA
DAVEEVASLLRRTPDLCKRLEGKIQMAYGHIKGEAERIKAALNQNWEYSTDAFHIMLDILEPFLNCINEIISKVDEDTAE
QMAKLKPVLKNFNFIITLVVLKNTLCCVSILNSSLRGIISISSTLQYTISNALKIVSKYQQELAILHRKWFSDAVSRAKK
LAVEISKPEMNHGQSTEMPLDDFYRESLSRPILQYLVAEVKRVFSTEMVRILRWLSLVQKKSVASANSTSATQEPGAHTL
LSNPPHTQRFVP
>193690818_Api_tp#DNA/hAT-Tip100 ref|XP_001944219.1| PREDICTED: similar to zinc finger, MYM domain containing 1 [Acyrthosiphon pisum]
MGTASIDDVKLENNDYSKNVVSGSSKHLCLEVLTKNDDGDINMQTLEKSDGSGHPRKFSSEFYFKTVRSGVRIPRLWLCY
SVVLDCVYCETCWLFASRLEQFKNNWIVGINDWHHIGEKIIVHEISKQHIQAVELRNIWSQNKTIDRSTKQHLSEGNFMR
TVKLLADFDPILSKLLNDEKYKIKYLSWQIQNGIIQLLSTEVCKIIINEVKTSKFYSLIVDSTQDITKIDQLSVTLRYVV
VNYDQKSIEIKESFLGFFELKKHGAIDHENLIYEVLESYNLDIQNCRGQGYDGASVMSGAWSGVQQRISSTVSNAPYVHC
CAHNLNLVICDAAKSTHVASNFFTTIQSIYNFFSSSAPRWSNLAFNTEFDHRIRQKVLKKVCPTRWEARHESVSALKERY
VDVLKSLTFYSLTSKKAEERCIAVSLKKKMESFEFVLMLGLWERVLRSLHGTSKTLQQHDIDLQVARNRLNDSFSSIQNL
RDDYTNIVKYAKEMCKKLNITESNFKIKIFLPLIDTVLNQLRVRFESLKEVCDVFEFLKPESIIKSKESKLIKSCYDFVL
LYKSDVGSELVSQILSLKEIIVNNNLKSISNLAIFIVQHNFSTSYSEVLAACILFLTLPVTVAIAEWSFSKLKLIKNYLR
NSMGQTRLSNIAVLNIEQHRTAKLSLDNIISQFSNLKARRMKF
>221114381_Hma_tp#DNA/hAT-Tip100 ref|XP_002165577.1| PREDICTED: similar to zinc finger, MYM domain containing 1 [Hydra magnipapillata]
MKAKESRMRHFSSKWYEKIYPNGEKFVRYWLLYSNKKDSLFCFCCLLFSTTKTNNFSEISKGFCYWKKLNPRIPEHENSN
EHQRCYSDWKNLEKNLKEGKTLDSDLQRVINGKMKKWRDILKVIVDAILFCAKNNLALRGSTEAKKTTTFYFSPRIQNEL
IELLGQKVRNEILSNVREAKYYSVLFDCIPDASHKEQMTQIIRYVHITEETCTIEESFVDFIESHKKTVKGLAAEITNKL
EKDGLSISDCRGQGYDNGANMSGKYNGVQAHIHSLNEFARFVPCAAYTLNLVGVHAAEVSPLMITFFGKVQAIFNFFSSS
TLRWEKLMKTLTISLKGNSDKRWSAKKEAITQLHRQIKEVLQVLESIIHTPKTNAVSVCSAKELIIQIDFSFLCLLDFWC
QILSLIDRENKLLQYKNISIDIAAKKMKGLKVSIQNLRDVGVDNIIKTAAETAIQIGIEGDFPMKRKRKVKQMALYEAED
DFCRLSPETDFGSQCNLVFDSILTQIEWRFEAMSAVSSDFDFLSLSKSSVDELKTKAKNLSKIYKADLDSSDFRSEMASF
KYQAAAMMKNFEKSSPMDILQLIHKYSLTDAYPNTAIAIRIFLTLPVTVATCERSFSKLKIIKNYLRSTMGQERLSCLAV
VSIEHEVANALDFNDVISDFASKKARKVTLN
>193713695_Api_tp#DNA/hAT-Tip100 (120-30 AA deletion in C terminal region) gi|193713695|ref|XP_001949169.1| PREDICTED: similar to CG41389 CG41389-PA, partial [Acyrthosiphon pisum]
GRSFRSQWFKLFDWLEYCPEKNVAFCYPCRIFGNNETKEIAFSVTGYSNWKKALANNKGFYKHQSSSSHRICITKLVDKQ
KRVETTTEISTLLNENVLEKHRYYVKSIFEIIIFLVVNELPLRGDFDLEMHEDKGLFQSLFRYTLKKDTKLAECAKLIPQ
NATYLSPFIQNETINIMHNAVQNSVVEDLKNADVPWYTIMEDGTKDNNNRENIAIAIRYVKNGKPIESLLAIKNATNLNA
AYFVQMTLDLLKSLNINTDYMLSQCYDGASVMSGTKGGVQALMQKKLNRTIPYVHCYNHQLHLVIVKAVSEVTEIGHFFD
QCRLIHKVFNTFKINTLYEGNNTVRLLEQRWSSHLKICEIIYNNYDDMINCLKKVHGKSFDGNEVAQCAGLSLTMKKKTF
RFALCLMLKCLRYIKPADKILQSRETGLTLAIPIIHSVINSLKQSRNEEVFNAILKDCENLLPETETESPKRKRKTTIKL
NEYILSESSELYQQRKAFKATYEMIAAVEVFGCSSAVCESTFSCLNRVDNPQRQSMSHNRLSNLTLLAFESKRTENLNMD
LLLTNFNKQNNRKLKLY
>hAT-8_AMi_tp#DNA/hAT-Tip100 1159..3180 hAT-2_Gav_tp basically identical. Probably the same element.[Crocodylidae]
MSKRKREEGECSGPAKKKSCSRFKEDWLKEMFETDMPHASGRQRVSLGDIFQYRESGDVLCTICVRAGANSEWTTRKKWG
DWKLDYLKRHLTHKIHTDSVMKLRNQSRGILKSLFSETRETRENRIELSERKRSNADEVKILIDNVLLTVKLNLSMLSVQ
EIHSHVGKYVKIPESWRSKNYAFEFIDCINSVIHQEVLNEMRTSPFHTLIVDESTDISVSKMLILYVKFRTMDDFTHQTR
FAGILKLTACDSSAIVAAIRQFYVDSNLDMQKMVMFTSDGASVMLGKRNGVAAVLRQSIPHLLEQHCVAHREDLGIDDAW
KDVPLMRCIETLLRTIYTLFSRSSVKKSKFEELSKAAECETVSFRPLNEVRWLSRHFAVSALMKNYTVLMDYCAQQVAED
NDPIHKYCLDKLRKPEYHVALAILNDVLGELAELCRMLQRSSLTTVEAFQFAKARIAKLRSQYLGETVHFSEDVQTLLSS
FESPVDTTSVIQFIEHTCDHMDNRFPEGELKEWSIFDKDSFSSSSNRNDFSFGHEELKTLATRYSALLNKSVETFKKDLC
KQYVDFKLTVSEKMKTGAIKTFEDMVTYILQQEQFSELSLLVDICATFQASSADCERGFSLMNAIKTKSRNRLEVDNLDK
LMRIKLHLASGKTVNLDTVYSVWKTEKGRRESLW
>HAT-71_HM#DNA/hAT-Tip100 671-3153 via tfasty with hAT-29_SM, 1 frameshift.   [Hydra magnipapillata]
MEKRKLSGWEFKQKRLRKEEQLKSNQTSLEKFLLKTHHDKMAKESPLIHNIADSGNESKSTESTNSVETIQTIERLNETA
ATSEYFDDISDWQENLNIDFIQDAVIKGPNSFKEGSNNYPRNVDNLSFSNHYFYRVMDNGEKNHRTWLVYSQKANKVFCF
CCKLFCLNPIMLAQNGGNDWRHISRILKRHEKSLDHFNCYSKWVDLKNRLQKGTLIDKILDKNLIKEVEHWDNVMRRLIS
LTIMMAKQNMPLRGSCDKVYHDNNGNFLKILEFLAEFDPVMEKHLFRAKKKQPNSVHYLAKDIQNEIIDLIGKSIKFKIC
SNVQKSVYFSIIVDCTPDISHQEQMSMLVRYVDVEDKNEIHINESFIGFHLIEGSTGLDLSNEIIDSLVKNNLSVENIRG
QSYDNGANMKGVRNGVQAFILKKNNRAVYIPCCSHTLNLAVVDSVRCSPKIAMFFNIIDQVYNFFSASTKRWLILQSKCP
SLTVKPLSDTRWESHINAVKTLRFEMPKIYEALQDAAKTANETIAKITAESIALKITSFDFLCSIVIWHKVLFEINLTSK
QLQAASTNISEALKAMERTINFFKENYKQEKFDSVVCIAQELASFLKVEESFAAESASRVRKRKRFFDEPEQNFEKQLCP
KEKYKQDVFNKIFECATIAIEERFNDFNAGIAPFSFLFDIKKLSTVKEDDLKSHCHRVEKKISENGKKDISGEELSFELM
SLSSHFTENLDPENAIKYLYANGLNEIYANVSIALRILLTLPITVASAERSFSKLKIIKNYLRSTMGQDRLNNLAMISIE
NKIAADLNIEDIRLKFSEKKARKVIFSK
>hAT-47_SM_tp#DNA/hAT-Tip100 280-2424 via tfasty with 158138577_Api_tp, 3 frameshifts and 6 stopcodons. [Schmidtea mediterranea]
MKRNSNICDYFNKKVKNNEEEENISNSVCQESPTESCSTILSANPEKDKSAVNIFPDCWNGDQLKLFQDKYDGLDVKNKK
LGCIKCSSFDNLGICTEQNIHISQVWRNFEVQPSGTTKSIQQASLRKKMSEHFQSKTHLLVLKMLELKKRNELTKVIDSM
NDKNMTNTNKIFNIVYSLIKRNRPLSDMEAEVELQLKNGLDIGISLHSRFTAIRIAEHIAKQMKKRIVEKIITSNSKICV
IIDEASTISSKSVLVIFLKFEMELENPTFFWDLVHLESQTAEHIFNILLQTLIINGFSMKFLKENLIGFCSDGASTMLGQ
KSGVATRLVKEFPYIIVWHCLNHRLQLVLDDAIYEIKQVNHFKSFIDKIYVIFHQSNKNQLLLQNISSDLGIEIIKIGRV
LGPRWAACSLRSALAVWRAYVPLYKFFTEDSKYLGMANRLANQYFLKDLALMIDILQEISYLSIGLQARFVSLQKATKLV
NRTVNVMIQMKENLGIFEKKVEEMLSSPRICRYSFYRKxKIxKSPTKKTYxNNNxQNEFSNVKLWTYKNEQKxEKNDVAE
LFNLLEGSDWNLEEVTCPWIYGEEKLRNLNEIIRYEIPINDFRDYVQNIIEGKNSVIHTIQKAKNKINTIAISSAEAERG
FSLMNIICEKKRANLSVEHISSLMTVNMVGPPLDRWNAEEYVKTWLRNHNSADDTRCSKxSKKNINENNELIWKLL
>hAT-73_HM#DNA/hAT-Tip100 2676-4562  [Hydra magnipapillata]
FLIYYVKVLIFYNNILLYLKVDCARITGSNFINRKETGFTGRELIKCCANTVREKCCKILENCNFFSILSDGSQARKTGK
EKELVLVRTERNGIPIYMVTELLEMSQFGGSDSNSVTAGINSVFESDNSFFKISTEDYIKKLVSATADSANVNFGIKNGA
LTQLEKSRKWLLKIHCINHRIELAIKDTFKDVTEFIKIEEFYLSNYYLLRNSGKLKSEVEAAAKAIGITFYILPKISGTR
FVGHRKRALSSLLETWPAFLSAYENYASDPKNGKTVGKVKGLLKLFKCQSFLVQVGLYLDCLEVIIPASKIFEKNELLPH
EIPTTIQRTLIEIDDKIKSIGEEDEFYDSYVIRYLVTDHNEIEGSFQRAGNKRKHPKNRSYINVTMEMNKFDQEKTIQKM
HEIKRVIFPKLHELLSSRFQDYSREFSIYRSMKFIDPIHWIAEDKESGVTQIKLVSDHFEVPLINAGFQRDAALREWKKL
KLLVTTEYESHPVRSLWNVIFKHKIKEFPNICLLVSLIMSISGSNSEVERTFSIVTNILADKRLSMNHDTLADCVIILGN
KSLWSKDEYDNIIDLSLLKYMKKRRKSDVGDFNKLRTANIQDIQTCSDADDVDSEDDMLADYLKELNI
>Zaphod3_Api_tp#DNA/hAT-Tip100 ref|XP_001950557.1| PREDICTED: similar to zinc finger, MYM domain containing 1 [Acyrthosiphon pisum]
MSYSAKRTRLSGAEYQKKRIARELEISKQKDRILNFFQTVPTSNSQNKNNNISSDNTEIESDNTSVCDNVQALVEKGTHV
SESNLENDGNLTLKAKTSPEDYCESIECHEDLLIEGNEANNITLSIVKDETIHNNSNCEMIEKNDQDFSLVEDTPADSFD
LELLKDPKMWPVICDKIRMFLVQRGPYQTHSKSYPKDDTGRRFTINHFFRKLSNGMEVKRSWLVYSGTGDSVFCYCCKLF
NETKSSLGKEGYHDWKNIAETLKQHERSPHHETSFLKWKELEIRINNSKTIGNINEKIIKTEIQHWRQVIERIISLIRVL
GNQNLALRGTHDKLNLENNGNFLKFIEFLGKFDPVMKEHIRRITSDEIHTHYLGKEIQNEIINLLAKKIRLHILNCLKKA
KYYSIVLDCTPDISNKEQMTMIFRFVTISEDTGEVTINEHFVDFIQLYDTSGFNMIKVLLDKLREFEVKLEDMRGQGYDN
GANMRGKHSGVQARILELNSRAFYVPCNAHTLNLVLNDSANCCLEAVSFFSLIQAIYKFFSSSTHRWDILIKYLPGLTVK
PLSATRWESRVDAVKAIRFQLNEICDALSDIVEDNTLTNASGVKSRSEAQGILKKIYDFKFVMCLVIWYDILYEINILSK
LLQSPSLDLSEATNQLNITKKFLEDYRSEEGFKKTLKTAKEVAKKVGIDDKFDSLQRSRRKAILFNYESQDNPINDPEIH
FKVNFFYQVLDTGIQSIIERFDKLSEHNSLFSFLYNISIIEDENELLKHCKDLQLSLTSNDGLNTDISAVELHQEIIAFK
RCSRTEKSDPRKVLEYICKRKMVELFPNLVTALKILLTLPITAASAERSFSKLKIIKNYLRSQICQMRLVGLAVLSIEKD
VSNKLDMEEIIEEFATLKARKIKFI
>MER45R_tp#DNA/hAT-Tip100 522-1321 wised with 9293884_Ath [Eutheria]
AVNFVSKLLQNKSIHMDIAIKHIRELLEFFKEFRISGFENCCNIAKQISTGLEIEIKFKDRRIRRKRTLFSCEASDEPII
NEEDNFKIXFFLIIEDTAIECINRHFELYTNHEATFSFLYDLHKLQEMSEETLKCHCINLHLKLNSDLHKTDLYEELNLF
RKIVPQESSALDVLKFIXLKXLSxxYPNVVIAxKILLTAPxTVASAERSFSKLKIIKNYLXSCICQERxTSLSIISIENE
VAKSINFDDLINEFxEKxARKIL
>hAT-37_SM_tp#DNA/hAT-Tip100 1311-3476 via tfasty with HAT-22_SM, 1 stopcodon. [Schmidtea mediterranea]
MEDDNCNCIIEKLFEQSFGSRLFDDKMEIIKNGKPTPSLENLRTRTKKCVRHFSTDKYQQIEWLTGCKSFCALYCWSCLL
FKHEKNVWNDKVGFSDLNNFEKAVKRHAASASHLQCMIALKKFGTQQRIENQMDTMRKISVQQFNEKVxKNRQILSWLID
VVCFLGQQELAFRGNDESAASINRGNYIEIINLLSEYNPLLKEHLDNATVFSGLSSDVQNDLINAISNVVTEKILSEIKE
TDFVSIILDETTDSSNKSQLAIVLRYVSNDGAILERFIKFIDVSLTRDAKALSDIILTFLENEKLNHKLVAQSYDGAAVM
SGESGGLQALIKNVIKSANFVHCLAHRLSLVLQKSCEKENQCKVFFTTLSGLARFFSKSSKRAAAFDQYSSQRLPKVSPT
RWEYNGRLVKTVSTHLQNLKLYFSSIKNQTSDFDWDKDSLILATGFLQFLKDPDFLVLLYFFNEIFPQSEVLYDILQKKI
YDISYCIRKITEFKNMIDELMIQKFEEHFEIINLELNILQLASQKRELSGKNISQHYKVLINKIGQKMISEMENRFDSLK
QIKFIELTDTSQYENFQKQFPVDLINNLKINYMQYFDIQKLETELKVIFCDSDIKNKKYADEILSFMRNCDLDNCFNEYT
KLCKLVLTIPPTTATAERVFSSMKRIKNYARNKMGSERLSSLAVISIEKELLKTLKSTENFYDAVINIFSQKDRRIFLKY
KY
>HAT-14_Mad_tp#DNA/hAT-Tip100 793-3288 via tfasty with Zaphod2_Osa_tp, 1 stopcodon. [Malus x domestica]
MAPTRKYPSGYLKRQRKRKVEQLTQSQKGAIDRFFLKEKEPQSSVDDLITEQQDDNEKLVDDLGNDEIDDDLDENDNHED
APIVTDQPSESIPSNIYDPQIWDSLDPKWIDLLAEKGPARDLSIEKGPKDQFNRRFNAAFYTRYLSNGEKHDRDWLVYSK
DVDKVFCFCCKLFKKGPLKGQLANEGYKDWTHLNVRLKEHENSFDHISNMTTWIDLRLRLQKNETIDKVVQDQIKKEKEH
WRELLRRLISIVKYLAKHTLAFRGNNDTLYQESNGNFMGLVQMMAESDPLIKNHLQRFQNNEIRYHYLSHTIQNELILLI
SCEIKAAIIQKVKEAKYFTVILDCTPDFSHQEQMTLIIRCVDMNSTPVKVEEYFLQYLIVNNTSGExLFEELQNVLKVLD
LDIDDVRGQGYDNGSNMRGRHQGVQKRLLDINPRAMYTPCGCHSLNLTLCDMANSCGKAKDFFGTVQRIYSLFANSTKRW
LILKENIKGLTLKSLSATRWESRVASVKAIQSQPLQIKKALLQLAESDNDLVTRSAAKSLATYDIGNFEFLLGMTIWYEI
LAAVNEVSKDLQSKDMLIDVAIEQVQGLIAYFEKYRETGFAEAMINAKKLAIEMEIDPVFPEKRQVRRKRHFDENEGESS
QPTEQSAEESFRVHYFLYIIDQAIGSLKRRFEEYQAYDDIFGFLFTSERLNSMDNDKLKDCCDRLQNFLKKDELFDVDGD
ALLVELKLLRERLPKEIKTSIDILNYLKRMRCFPTASIAYRILLTVPVTVASAERSFSKLKLLKSYLRSTMLQERLNGLA
LISIESDFLDKIDYEGLIDDFAAKNARRAIFK
>HAT-9_NV#DNA/hAT-Tip100 274-2832 3 introns (perhaps one small one too many). [Nematostella vectensis]
MAYSPSEDGAYCKFCAAMSIMSGDSRKVHFIQAPFTKWHKLGEKAGEHQSSKCHQECMISGQRLIQAIENPAKSVNTLLG
EEKRRNIERNKHIIKCVAEAVRFCGRQCIAFLGGGVRCxQQDEHACQLNRNVGNFVAALQMIANHDAVLDQHLTATGMRN
RNARYTSPRIQNEIIEIIGNDIILDGLLDKIRAAKFFSIMADEVTSNNKEQLALCIHFVDGSQVHEEFIGFIHLRKITGQ
EIANVILEKLQSLGLDPKNIRGQGYDGAANMSSDNVGVQRKIKEVAPKAVYVHCSGHCLNLVIAHSCHQQSITSAIDKLK
QCSLLNSVIEKAIDDADRRKALVDMCRTRLAARHNAYTHFYQSFTFIITELVGEEYQDASWDRRSKDDAASLLASLTSFD
FIVSFLVLYEFLSHLAGITVKLQGRAVDIVKAYQEVVYNIFVSAKCLPRFSSFVCIFQILQVKETYEVLSSKMDETFSHI
YTHAVRMADIVNTAPSMPRLVGRQAHHVNAPAVNPEEHYRRNVSNPLHEPHQVGTGRAILRYDAKQCNDRPSTTVLALKQ
CERDMFPNMSTLLQICCTIPAPSCECKRSASALQRLHTYNRLCMGQERLTALALIHCHYDTHDDTDVDLDQMVNQFARQH
PMRINLDHCLKIDIGQKIRIQKH
>HAT-20_SM#DNA/hAT-Tip100 649-3384 [Schmidtea mediterranea]
MAESAGDTNKRKSVTKLSGSSRRKLAKEASLKADASKCIKLTSFITKQSKLPVVQSAEVSAKNEHVFDDQHPSTHSSSCT
EPAETETSSEVLVEDEQVLSAVDEQHPAIHSCAENTETVTLPAQGLKHNQGDSEFDTVEKQLASDILQEPLLPQSDFPTD
PGLYINTSISSKLIRKLFEIGPCQPGLNEPFQFPTDELGRKFQISWYTKCFGKGSMKEERNWLVYSPTNQKMHCQACWLF
ADCKTENYSKEWSDPNFGVYNWKKGMEKIVKHETSNQHQSAICQYLLAKYRISNDKTVISGLISQERYQVEKNREVLKRM
VDATFFLAKQGLPFRGHREHSGSDRCSNTGNFRELLFLLAKYDSTLDNHLKFEKKNELYLCHDVQNDLIQSLASEISANI
DKEVMSAQFFSLIVDSTIDISRVDQMSVSLRLVLKSGQVVERFIGFYTLENSNAAAFSNIILTELQKRNIDITLCRGQAY
DGASVMSGIKNGLQTKIKTLSPNAIFVHCCSHALNLVTIAAMSLNSDVQLFFGTTEKLYTFLTSSLPRLHILEEHQKSRY
ESTVDTLKRLSDTRWASRKHAVDSVVGSFSAIISTLEDINFGESKEHKGSVRAEAMGLSILITKYSFVFLMLFLQKLLDN
IFVLSNYLQRKDIDIAFAKQLIYVARNKFADMRSDKAFESLNVAVKSFIIKNCSLLDVETEFKEKRIAKKKRMAGELNRD
ERVDDPTTRFKCETYFTVLDTLVIQLDERFNDFHNTVALFSCLDPSQISEENKESFQNLCDIYKNDINIEEAILEYDTFK
YVYASIRPLLSCELQLKEVLPFLVEKQMAPGLPNLAILYKIYLTLPVTSATAERSFSRLKIIKNYLRSTMTNERLSGLAL
ISIERELAENIDFESTINRFASMKSRRKQFK
>hAT-36_SM_tp#DNA/hAT-Tip100 (-Gulliver?) 465-2455 via tfasty with HAT-31_SM, 1 frameshift. [Schmidtea mediterranea]
MSKRKNLATGELGKKVKQLKSEWLSLYVETTIPSSCGNQNIKLGEIFVLLETGAVICKFCAESKVGGDFAVGKKWNDWKL
DYLKRHISHKTHIEAVNILRTRLSGGVLQLLTETQQDRENRTEAISRTKAGGDKIKILIDNVILAIKMNVSMNSVQEINN
HFAKYVEIPESWRSKNYAFEFVECINHVIQQEIFNEIRMAQFHCLIVDESTDISVHKMLIIYIKYRFKFNYKTVFAGILQ
LNACDGKTIVESIKCFYKNINLDMQKIVMLTSDGAAVMLGAYNGVTALLTQEIRHLTAQHCVAHREDLGIDDAWKGIPLI
AQVETLLRTVYTMFHRSSVKKHNFEEMASLMDCEVLMFRPLNEIRWLSRHFAIIPFIRNYDVLIEYCKEKLDSSNSADPI
AKYCLTALENKVNRITLIALNDVFTELTKLSKYLQKSVLSPMEAHQYCKSIITKLRSQYLGDIIYWSEDVKKILEDESNN
NKEILSGIILFIEKLCYHLDKRFPDADMDLWNAFDQNAIVNTSDFNYGNENFKKIILKYGNLIPNMDNKIIMDEYKDLKY
LFTEKFKNNSRDFNDLLQLVLREDSFQNIRILFDICGTFQASSADCERGFSLMNLIKTKFRNRLDVNHLGNLIRIKSHLM
SENTIDLDKVYHYWKHNKDRREKK
>HAT-24_SM#DNA/hAT-Tip100 388-2840 via tfasty with Arthur1_Cis_tp, 6 frameshifts and 9 stopcodons. [Schmidtea mediterranea]
MSDGYQRKHESGSEKRKKKQEKEEALKKMKGSILKYINNDDKPNNDTTVTTNVSIPEILPNKSAKQSETDVTYEHPEQIY
QPKDTQLQFDDPDPELASSEDLKMKQSNECRVSDPAEWEVNAHLIGYYAENIPSQNLESDFLSMGRQFGDKTRFAHKEYF
LRKLTNGEVVKRDWLIYSPSTGKVFCYVCKLFDCKYGGVDESCNQFQTGFDDWKNATARITLHEKSKDHIAALSMMLQRQ
KSTRIDAELQKEKEKLFKYWTEVLKRIIAVIKFLAERGLAFRGETELHNCHNNGNYLGCIDLLAEFDPFLMEHIRKYGNT
GKGNVSYMSSTICDEFIDILGSKVLTLIISEIKNAKYFGIKMDQLTLVIRYVILNGNVVERFLQFIAIEHHERKYLFDLV
MNTLNLHGVDISNCQQHKCNLSLAYKLDLDRSTVxHSLNLVGSSAVKCFSAAVYYFGIVQSVYTFFPALPKKWSKFKDQI
KDKSAALVNKALLEPRWSARSDATKAFYANYFEIRLALFDIAESECQPTSSCPxSKIVNKNxYRYETALMCLIWKDLLQQ
INIANKALQQPGIELCTIKKLHDSLTKHFHETRNKFEAFESMAKDLIKSDYKECTKRKHVRTRFHDVVMDENNIDMFKFE
CxWQFLIQSxYVIIDRLSNxDGKRRVAYAGxNYKFSFLLDKSFSGDEIVTKANELIxIYSSDLEKAFGDQFLLFSRIFAD
TKSVTEMMKAKFKTSFPNVNIAFRIYLSIFESSCECERSFSKLKFIKNYLRSTMGKExLSSLAFLSIENDLMLEMSFEDV
IRNFVHAKSHKVYIIWSII
>HATm-4_HM#DNA/hAT-hATm 1452-3412 via tfasty with hATm-2_AA, 1 frameshift.  [Hydra magnipapillata]
DDQESNRKFFLGTEDKKYSQMSRESIRKKTFKRKHNTLEVKANLDQELIFDENDTEMLNDLDFEPGNWTKRKEKINEKPI
TCTIPKDIYSGSVALAASINDISPAVLQKVVTSVVHKAGVDVSKLHCSISTAYITYEMKKVNLIISKQARNDIKVALKAS
KYPPIIHFDGKTLFELKKGKRFKNDRLAVLLNIDGEVYLLGVPSLSSSSGDDQYKGIMNLLKEYETEGNIGGLCFDTTSS
NTGTKKGSLFRIANNLDIFPLFLACRHHISELKIVHFCNVVTQRKTSGPDNLLFKKLKDIFETPDFHYDTNDVTQFFWDK
TKGTVIECAAVESLNFCKEYIKNEKILRDDRKELAELVVAYLSPGGVKIRKPGAVHHARFLGKAIYYLKLQFLSNQIKFV
QEDKLLLEEINIMAEFIACFYAKWYLQSDKAIKAPYLDILSIHKMHLYKDVCAKPDAVEAVLKSFYKHSWYLDSTIVPLS
LLDKDVSNEEKSKIASAMLQYDMPNSDYFKIDNKSLIDVENKIKVETRVYNDPPSLSLLVDQFSYLMFDRIGLDKQRIRD
WLTLPPQYWYTQSSFRIFKAFAKSLVVVNDPAERAVGMMQQFVHRYNEEEEIQNRLLTVDKTRLATKKPGXKSSNLSKKR
LIDSLSIMEKMIEK
>HATm-2_HR#DNA/hAT-hATm 419-2749 [Helobdella robusta]
MASNSNCGALTTRSMTNIWLIGQLQSELPVNVLPTTGDVLRMFFYYHQVEKKTVPESAKLSSDKVMDMWNKARIPTTYHT
HVVEKVKSVVDDYKLIKKNKNRQSEAQRAREKEFEEKEHMLFDIAHQHAMQLIRIQEDIEFLEDQRGSRRMQMSGIDKDL
TKKEERTEQRKCKEEERKEREQERMTESTSLHLSSSDDSDSEQQDTEDNYEIEIPVYYKKQISEVEDSLSSSASKKTRTV
QDMLSSPDVASALDRINLSDRKFTVLAAAIAQASGQDIRDTSLSRSTVHRKRQQHRSTIDSSIRQQFQDRDRNPLLVHWD
GKIMNDDPHSRTDRLAVVVTGCNVEKILGIVKIASSTGQAQANATFQLLKLWDVSEDIIGMCFDTTAANTGTSSGACVLL
EKLLHRNLLHFACRHHVHELIIGEVFTVLFGPSRGPNIGMFERFRAYWPNINQSNHKPLDDDRMNHSLLQMMRSDIVPSL
TCFLSADSSYIPREDYKELVELCLLVLGYPMQTDGKYHFRVPGAYHMARWMAKVIYCLKMYLFRNEFKLTATETKSLTEF
CLFATHIYVPAWMLCPIPSDAPVNDLQLLSRIEQYSEINKNVASAATKKLKNHLWYLGTEMVWLSLFSNKVANAEKQLIV
EAMTAVDSDWSVRGVKYPATELEQVKSKPLHDLVSGTSRAALLSLGMDVAILRETEPDSWNDLPLFQKVANVVKSLKVVN
DTAERTVALMTNFNQSITKNETELQKLIQVVEDNRTRIPDSSKRTLASAQAAAAMF
>HATm-11_HM#DNA/hAT-hATm 1005-3408 via tfasty with hATm-1_CS, 3 frameshifts and 3 stopcodons  [Hydra magnipapillata]
MSRSMLCIGGECKKSNRGEFTGVCILRELLSLWDKGGFDSRFRVTEQVVKKKLEKSYERYKKLCSLRTLMEINKIKEEQY
KTKTESFIKEANCIFPVYKTDILKLIRDDENRDKASKDRRFEFLKRAFKGEMVKFDTGKDKSYQEKIIGGEKRMLDMIES
MRREEQHKKEKQEMSKKKAIEDIERMKDFEIELSSSGTSPLILTVNLSLAKKKKKISEDRVYMELSMNDVLDKWVPFLTR
YKVSVRAETSLLSSLFKIGGVDLNTVPVSKSSLHRNKKIVIENEARIVREENLDKVRGLKVIIHFDTKLVKHYRTDQKMS
ETVERLALSISSPQVNEPLDFLLGVLEIKSSKGQDQAIAIQNILEYYELTDQIIGCSADTTASNTGKYKGAIKFLVDHVL
KRPVLWLLCRxLNYFDNIFxKFVARNCCKIITFYIFxKLIFKGTIYLKGIFPMQWIIFKCSTKSRAIYKDFQKVWPEIRE
RANNVDQLLFFNYGREEYMVGTDFHRRVLDTKNFCITALKQDCFQRGDYKVLCELIVIYLGGHVPGFQFKQPGAHHQARF
MADCLYLLTMQLTSKINLMLNKSEKDMLELSTDFIVTFYGAYFLKSPMAAQAPSHDLDAFKLAYEMMSNKLYISKYGPLG
KLLHASLVRHSWYLTPQLVILSIANRHLGLKERAGLAQKLLGFNCPQPDDFEREQPQPPTDVVPMSVLSDFITKESWLLF
TYLGINTGVINTWIKDNFENDSYKHFQHQIENLEVVNDRAERHIKLVQDFVAESHEEGLLQDTLQVVQKNRKEVGKDMKK
K
>HATw-3_BF#DNA/hAT-hATw 883-3909 (C terminus may be short) [Branchiostoma floridae]
MLFIPGSFFFFLVETEETYPGPISRKLGLSLSRLEGGFLSELGNGFSNELVLELFSFIRKSGLREETILKWLQNIATSEL
KEKLLHVQEASVRIFIGRLQKKRRELVTKKRTKELQILMTKKFEGPKPLQERCANLCSGFGPSPAVAQPATQSLHQLINF
SRDVVKQNNVLEYTVESLSEDYIKCLSEMNEKTTEIQELKQSIKDQQRMSRVCREESVKQNSLLLRLEKDSEKTYSRLQD
ALVKLSEYNTRNVNKRLKRRDEKIKAQENKMKMQESTLNEKDSLIREKDEEIQDLKSMVEELQEKLDKEVKNKLHAQQIK
SHYKSSLLRSHQLCDEDSVQLEEKLACLEAENKELHENMKQFLDSDEVKTFEDGRFTDEVRQVYMMLLSMDTGLNNVEWI
IRTVLQKLGGLRCGRLPKYSTAQTMFAEARRLSQVHVAEVVSKSNNITVGTDGTTKKHEKYGSVSFFTQDGQFVAGVTEH
QVDMFRKVIHELATACGTSEEEMWLSVKNTMSDRHIVNKCLNKQLEEIREEALKIVVKDWDDKSLEDKEKMKKMWNHFCS
MHYIVGLATSAEVGLKKFENASLTSSEGATGMENSCPSQAESGTHRVVRATCKAFSHTGACEKSGHPKEFEAYLQTYTPA
KDNKLISFRGERFNILFKNGGATYHHKNDLLAYLDTCEAPNRLLQAIRSDLSVPVYVAGCCALGIINKIVTAPLWRLIES
ERSILDMCQHFHQLHISFKSWEKDPGTLMDGEAIFPSVQREEEDVYKSLFSHDDAEVKRLTCEALKSIMAEFIVVTERML
KDYLPGGVFYTPTQDQREEMSSCPTNNTGVERTFAHLDRDVRLAPNATTLTREGKIMFRLNKTGQYLDTIPMEEKCTVFK
EARKTARKDRKLHQQERVQLKQHRQELLREKTRKQTQKKAAKEAALETLKSSVRQLGLWETAEQIDSGLSKLLTKKARLQ
ALKDQIKFRKEVLGVGDQHPKSLFQYSTGGKQFQETDLKKNLLMIIRN
>hATm-59_HM_tp#DNA/hAT-hATm 402-2171 C-terminal ca 150 AA probably missing. [Hydra magnipapillata]
MSKNSVASNKNKKVWESNLVRFEKAKTSRRCTTVVKSISEMNKLPTEQRIIDRFKSLSSNVKSRKERITIVAKETKLLWR
KLNIPIQQGKSAAERKIENVLKKLDKDSRKPGTQNFTRLFDITDEKGEWLCQEDKEFYCLQKSTNGRAGYCTTIKDAEGI
HPRKLVMIKKQMSISQGQDFVESASEGDPSESEEQCSSSDIEAEGPSSSFKKQKTNSAVNLVISAKISTKKAHKVCKTLS
ESGISIYTPTQSGIYKGVMKEGEKLKVNYMENLKNEKWSLHFDGKHIKKMEYQVVVLKNENREVRLAVLELMNGKSETIY
NGIKHVLDEYELWPAIKMIVSDTTSTNAGLRNGVVTRLQKHFKTIGLEKPVFIGCQHHILDTLLKHVMNDHFEGSTMSPY
LHYPFVTRLQQDYENLKLLFCNIGNPLTKVKRTRWRDDMDFLNHLIACYRKFKSTGNFPKVNFKSLPAISNARWNSRAIF
ILLAYILIPEYQESESTQAACDFICGSWGDIWFGGHYFNPADFVNLLEACNEHPKALKSLKRFWSTEPTPIPTQRSNICA
ERAVKVMQDLMPLCHSIEKLNIKYLLSNTQ
>HATm-1_SM#DNA/hAT-hATm 682-2949 [Schmidtea mediterranea]
METRGKSNVYLLGSAESDILGAKLPSHRQTFGYFMHLHKVENLTVRDSSRQTIEKVFGFWHKAGIPVRAAKHCIDKLEAF
FAEWKGLQKHKNRITDGHKMKEDEFTSRLDNLFDIAHSDALTLITIPEDRAFLLSQRQEGRPGSIGAVDKVEELKTRRRQ
DRKEAELKRKKRSQEEIEAYSSQAALKTALSSDDDAVDEYDDDEYFDKSKTCSRSDEVCVGPKRAKINVLSPGLTSALDR
TKISSRNATFVLSEVASSLGHDVNTLNINRSSIHRARASHRAARSSCLRSEFSTTVPLTVHWDGKLMEDLSTHEHVDRLP
VLISGVGVEQLLGVPKLSAGTGEAQASAVVQCLEEWGVAEQVAAVCFDTTASNTGHRSGACSLIEHKLNKDLLYLACRHH
IMELIVGAAFETTSVGTSSGPEIQIFKRFRDYWQFIDRDGFQVASSDPSVELLVAPYRSDILSFARTYLQAEHPRDDYRE
FLELAVIFLGDVPDRGIRFQVPGAMHRARWMAKVIYSIKMFLFRSQFKMTASEERGICDVATFSVVIHLKAWMTAPLAVE
APLNDFTLMGQLRSYPHAAISAATSKKLGLHMWYLSEELIGLALFDSRLSHDSKRLMIAAMDEEAPDHPSKRPSIKSDAF
LGKRGLEQFCTVNSKKLFQLLDLPVTLVNKDPSDWEQDESYTRALGIVKSLAVVNDRAERGVALIQDFNKKLTKNEDQLQ
FLLQIVNEHRRQFPDCTKRNLATCASGQQSDTVKL
>hAT-41_SM#DNA/hAT-Charlie 448-2307  [Schmidtea mediterranea]
MSSRKRKVTEENRLFNSSWELEFLFTMPGEKPVCLLCRNSISVLKKANLQRHYTSTRSNFEKNYPLGTKVREEKVVSLKK
NLLGQQHVFRRLLTASDCVTEASLKVSWVLAKKQKPYSDGDTVKQCFQECADSLFAEFKNKDEIKKQISDLQLSHQTVAR
RIEMLSSDIYEQLCSDLREASGFSLALDESCDTTDTEQLIIWIRFDVKDNFKEELLALLPLKNTTRGEDIYKALKECLVK
NGIDIKKLISVTTDGAPAMVGRKIGLIGLLVADKDFPNFQAYHCIIHQQALCSKLKDDELKKVMDVVVKIVNFIRANPLN
HRQFKILLEEYDSNYNDLVLHTDVRWLSRGKVLARFWDLLQEVKIFLGGKRNEELLMHLDNPVFISRLAFLIDITDHLNK
LNLKLQGRYQILPSLIKEISVFESKLDLFMSQLQQSNYTHFPALSKVAQEYQDAIKSEQFDQSLEIVKLDFSTRFKDIRN
LTPLLLFIDNPFTCNISVVSTKMQLLGGDEGEVQLEIIELKHSVALQDKHKETTPTEFWMMYVPSDQFPNIYNCCRKVLT
MFGSTYVCEAGFSAMTNIKSKKRNSLTDEHLENLMRAAVTQYQPQIKKIANIIQSQISH
>HAT-11_XT_tp#DNA/hAT-Charlie 732-2669  [Xenopus (silurana) tropicalis]
MAKRKKDEVYRTFQQEWTEEFAFVERAGSAVCLICNDKIASMKRSNIKWHFDTHHTTFASKYPAGDSRKKACQELLCRVQ
ASQQQLRVWTQQGDWNSASFAGALAIVRNGKPFTDGEYAKTFMLDVANELFDDFSDKDKIIKRIKDMPLSARTVRERTIM
MANQIEATQVKDINAAPFFSLALDESTDVSHLSQFSVIARYAVGDTLREESLVVLPMKGTTRGEDLFKSFTEIAKEQNLP
MDKLISVCTDGAPCMVGKNRGFVALLREHEKRPILSFHCILHQEVLCAQMCGEQLGEVMSLVIQVVNFIVARALNDRQFK
TLLDEVGNNYPGLLLHSNVRWLSRGKVLSRFAACLSEIRTFLEMKNVERPELANTEWLLKFYYLVDMTEHLNQLNVKMQG
IGNTVLSLQQAVFAFENKLELFIADIDTGHLLHFEKLGEFKDACTASDPAQHLDLQQLAGFTSNLLEAFKARFGEFREHT
HLFKFITYPHECAVDSTDLSYIPGFSAGDFELQVADLKASDMWVNKFKSLNEDLERLARQQAELASKHKWREMKKLQPAD
QLIVTTWSTLPVTYHTLQRVSIAVLTMFGSTYACEQSFSHLKNIKTNLRSRLTDGSLNACMKLNLTTYQPDFKAISRTMQ
HQRSH
>SPIN_Og#DNA/hAT-Charlie 665-2473 [Otolemur garnettii]
MTMDRVEKNVKKRKYSEDFLQYGFTSIITAGIEKPQCVICCEVLSAESMKPNKLKRHFDSKHPSFASKDTNYFRSKADGL
KKARLDTGGKYHKQNIAAIEASYLVALRIARAMKPHTIAEDLLLPVAKDIVRVMIGDEFVTKLSAISLSNDTVRRRIDDM
SADILDQVIQEIKSAPLPIFSIQLDESTDIANCSQLLVYMRYINDGDFKDEFLFCKPLEMTTTAHDVFDTVGSFLKEHKI
SWEKVCGVCTDGAPAMLGCRSGFQRLVLNESPKVIGTHCMIHRQILAMKTLPQELQEVMKSIISSVNFVKASTLNSRLFS
QLCNELDAPNNALLFHTEVRWLSRGKVLKRVFELRDELKTFFNQKARPQFEALFSDKSELQKIAYLVDIFAILNELNLSL
QGPNATCLNLSEKIRSFQMKLQLWQKKLDENKIYMLPTLSAFFEEHDIEPDKRITMIISVKEHLHMLADEISSYFPNLPD
TPFALARSPFTVKVEDVPETAQEEFIELINSDAARTDFSTMPVTKFWIKCLQSYPVLSETVLRLLLPFPTTYLCETGFSS
LLVIKSKYRSRLVVEDDLRCALAKTAPRISDLVRKMQSQPSH
>hAT-6_AP_tp#DNA/hAT-hATm 700-2373 via tfasty with HAT-10_SM, 4 frameshifts and 1 stopcodon. Fragment (C-termal 100-150 AA missing) [Acyrthosiphon pisum]
MSIKLRSDFQIFLIGSQITQIHGSKLPSNGQVLSVFFYNMRTVNLTTRESAALAVRECCIFWEKARIPIRAIHHCITKLI
NLYEEWRNLQKNAQKVGESYRLKENDLKKKIDLLFDIAHFDALKLIKIxVDKQFLVNQRLPGRPGCLGGIDIKGEIKENI
HIQRKLNESKRKEIYNTSCASTSTLLDNSFEQNLETDSLESSDISELETSINSLELIEPPTKKKKCRGKINFITPKLAGA
LDRCQLSIRDSVYVLQATLEALNFNTDDYVINQTSIHRARESYRCERGEPIKLQFKKSLPNYAVVHWDGKMLPDTTTRNA
TVERLPIVITSKNIEQILGVPKLERSTGEEQAAAVCNALRDWGLCNIVQALCCDTTASNTGRLNGACILIEKKLGRDLLH
LPCRHHIYELILRAVFEIKIPQVTTSPSIPLFKNFQKQWCEIHTNKYNSGIEDQDVVNLENVKEDILSFVKDKLKIKPRG
DYREFLELVVMFLGGDLENNITIHPPGAMHQARWMARAIYCLKIFLFRNYYNIAESVKKAIGDICVFIIIFYVKAWLG
>HAT1-2_NV#DNA/hAT-hAT1 285-1805 [Nematostella vectensis]
MAEASAIDIDPAEPEVLNGVRNAEVQSLLDVLKAPRDGDLSRKRKIAVNQGGNRRGSRNKPTYYEPTKVSAKQRVEEFKG
EDLIVRNNEVYCAACKEVVSVKMSIMKVHVKSKKHELNKEKLKKLGKREEDIVQALHKYDQAHHPKGETLSTSTRVFRIK
VVQAFLKSGTPLNRVEFFREIFEEAGMSLPSSSNMRQLIPFILEEEYKSTTSMKGRRVWKKLTGRVMPRYNSTRWWSLWE
CAKVVFEEWGHVPASHDEEFAKASRQKLSDALLHNPVQLRVEFAALMELEKFVKATYTLEGDGALVFIAFEKLEELGAFI
HVQNFPTIANTLQQMFPMNVADQRRWYQYAVRECLVPAFDYYSQTLVNDAVVAKSVRVFKAARLFNPKYVKVSRPNAADI
DQLDEVPFLNNNEIQSLRTELPMYLVKAADIPDDFDPQADIWPWWKAVSQELLAWSAAVQRIALVQPSSAAAERVFSLLA
TMFGDQQHDALEDYIEAALMLRVNTR
>hATx-7_HM_tp#DNA/hAT-hATx 322-2544 [Hydra magnipapillata]
MASCSTRSTSRHSVFGFPKELKKNMLPTCEDVFCTYCFHQKQQCQSVNDIVRTVATDLIEIYNTASIPTIAFDSVMKKVK
RLIDKGNDLRKYPDAKRTSETYQKILSSFSNLFDICPCKCVSAGIANRADCKCPVDRKIPLIEWNFWVDQNTTRKMVIGN
IDPVVTGKLQKSEERKRKAAMFLEKTKLKTVECSSTFQDFDNVDMEKSSESQDTGGSSIDDSDITDEETSDSDGSRCAQN
RNHYPELCKAIDRSKCSNRDACLIVNSALKDLGFLFPENAIHPSKLRRQRSAYRKKSVVSHAEENQEIVCLGFDGKIDVT
LTRVGSTRRKLKEEHYALVSFPNRNYVEHVVPASSRSDDISKEILSVVISTKSETTLRALVCDGTNVNVGKSNGIIRKIE
QYLQRPLQWLVCMLHTNELPLRKLIEVIDGKSTGPRTSKGQLAGVMEFDPQHKPIIDFSPVSGCVAEVDETVMSDLSTDQ
VYLLKICLLIQRGYNASNNYIDYLQTAQPGAVSHARWLTKANRLLRLYVCEQCPSHNLRRIVSFILNFYAPSWFHIKSHP
TCQDGAKNFFFMLSLYQKLDKPDQEIVAPVLQNNSYFCHPENILVAAVGDDDGNIRKFAFEKILHARSEHSDDRIRCFDK
SLIKINFTCKSYLDMIDWNKAIFASPPLLDDITSETIVSHSKVILPKFPCHSQDVERNIKDISAVCGKVYGHDSRHGVII
QMKKSRIDLPSLETKADFLP
>25518425_Ath#DNA/hAT-Tip100 gi|25518425|pir||C86326 hypothetical protein T29M8.13  [Arabidopsis thaliana]
MCRGSQKQFSFFLFCFLYNHHILENQIKARDYRFQGKATTKIMYRFLKRKSPPPPDINLNELPSDPAKRKSILSYHPNQR
DEVRREYLIRGPCQPRGHKFKQIAIGKVLRRFNPKWFDLYGDWLEYSVEKEKAFCLYCYLFRDQTGNQGGSDSFLSTGFC
SWNKADRLDQHVGLDVNSFHNNAKRKCEDLMRQGQSIKHALHKQTDVVKNDYRIWLNASIDVSRHLLHQGLPFRGHDESE
ESTNKGNFVELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHCFSKEVTRSIIEEMDNDVFGLLVDESADASDKE
QMAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASNMKGEFNGLRSLILKESSSA
YYVHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGASCKRKDKIREIHRQKVEEKISNGEIKTGTGLNQELSLQRP
GNTRWGSHYKTLLRLEELFSSIVIVLEYIQDEGTDTTKRQQAYGILKYFHTFDFVFYLELMLLVMGLTDSLSKALQRKDQ
DILNAISLVKTTKCQLQKVRDDGWDAFMAKVSSFSEKNNTGMLKMEEEFVDSRRPRKKTGITNLHHYKVDCFYTVLDMQL
QEFNDRFDEVNSELLICMSSLSPIDSFRQFDKSMLVRLTEFYPDDFSFVERRSLDHQLEIYLDNVKNDERFTDLKCLGDL
ARVMVETRKHLSHPLVYRLLKVSLILPVATATVERCFSAMNFVKTTLRNRIGDMFLSDCLVCFIEKQALNTVTNESVIKR
FQDMSERRVHL
>4580475_Ath#DNA/hAT-Tip100 gi|4580475|gb|AAD24399.1| Ac-like transposase  [Arabidopsis thaliana]
MDQALYSLETRFEQFQRYEQIFGFLFDLKKLQSASDDSLMASCTNLKDALTHGTHSDILASDLFYELKILREALPKEVRR
PIEVLDFLQKVEGCYPNSWIAYQVLLTIPVSVASAERSFSKLKLIKSYLRSSMSQERLSDLAILSIERALVREVDFERLA
NDFVGKKGRRITL
>31200611_Aga#DNA/hAT-Tip100 gi|31200611|ref|XP_309253.1| ENSANGP00000005427  Arthur-like [Anopheles gambiae]
HFYKKGKKGNGLLEERIWLVFSETTKCVYCYPCKLFSKSKTKFITGLQNWRSITVLLGEHEVSKDHIAAMCTLYNRSTKI
NSIDNLLLAEKETKERYWRDLLKRIVSTIKLLCRLGLGFRGHDARIHSVRKGNYFTCLEYLSEYDEFLKMHLKKYGNQGS
GKTSYLSHTICDEFIQIIADEVRSKIFQEIKEAQYYSIILDSTPDISHIDQLTFIMRYLSSTGQIVERFVGFIPIGKHDA
LHLEHVVLQFLDKYGVDLLNCRGQSFDNAANMAGKYNGLQARLKERNPKAVFVPCTNHSFNLVGNFAAENCSEAVKADAI
NAFYRRFNQIKKALNELSTAYSEKQVTKLEAKSLLKKMCKYDTALLTIIWHTILQRINATAKSLQSPTCEVLTGSKLLTS
LSKFIDEYRHDYEKVVQQSTLNEKRKQNQLANENETERTLKDKFRINTFYVICDNIKSELMVRAKKYESVLEPFGVLFDW
SLSSEKGSEALAVLKNIYNDDIEIEMVDDELEHYLHFMKDQNSLIKNSELDIEEMYKITKNMSCTFPNIEILFKIFLTIP
ISNASAEKRSFSTLKRIKSYLRNSLGEAKLNDFAVLCVEQDLLNHLDTDKIIKEFAFSKVRR
>37537014_Osa#DNA/hAT-Tip100 gi|37537014|ref|NP_922809.1| putative transposase [Oryza sativa]
MKRNGDIASLFRKHEAKAKKRADLIDEEAQIEEEEPPLVEPHPVPTPVVEATNEEQDAPPEYDADHLQYDPGLRSPIASY
DVNEQDAVRRAYILKGPNQCYAHDFPVREIYGKKRHFNFVWFHKYQWLEYSVAKDAGFCMVCYLFGSGTSNFVTDGWRNW
NKADALDKHVGGITSAHNKAQEKYNLFVSGGPSIDNVIVKVSNESEIHYKARLTYSLRCLRYLLNQGLAFRGHDESEESS
NRGNFIELLKWLAENNKEVDRLVLKNAPGNCILTCSSIQREIIHCCADETTKRIIEELGDDHYAILADECSDLSHKEQLA
LCVRYIDKLGRVCERFLGVVHVASTTSAALKKAILTLLSDHHLSPSQIRGQGYDGASNMKGKINGLKTLIMKESPSAYYI
HCFAHQLQLVLVSVAKGNDDCVWFFTQVSHLLNIVGTSCKRHDMLRDVRAQKIMEALELGEIESGVGLNQEMGLARPGDT
RWGSHYKTILHIIGMYPTIHEVLITLGKDPTQRDDWPRIHAVVGAFESFDFVFSAHLMLVILGYTNELCLCLQKRDQDIV
NAMSLVTLAKERMQKLRSEGWEEFFQGTVVSFCNKHSIQVPTLDGKYVPHGRSPRFYPDQTNDDHFRREVYIGVIDKISQ
ELNSRFDEVNMELLICMSALNPFNSFASYDAQQVLKLAKFYPKEFSTMDLIRLEMQLGTFIDDMRRDERFKGLETLAELS
IKLVETNKHVLYDWVYLLLKLVLILPVATASVERVFSALSVVKSKLRNSMCDKLLNDCLITFIERDVFSQVSEEDIKKNF
MSMKTRRVEKK
>34897860_Osa#DNA/hAT-Tip100 gi|34897860|ref|NP_910276.1| Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F17A8; putative protein. (AL049482) [Oryza sativa]
MEKSSIALLFQKHEAKKNACDLPIPHVDEGSSIPAVNDAPIDEDIVVDEGVCEETEEDTVVDDAPPPDVVVDEVSIETKE
ESLPIYDVDDLEHDPGLRVPISSFDANDQDAARRGYILKGPCHLWAFNFPSRKIYGKDRRFSVIWFHKYPWIEYSVDKDA
TFCFVCYLFGKESGKFVTGGWHNWNVGAKALDKHVGGTSSDHNFAQEKYNLFVKKGCLRYLLRQGLAFRGHDETEESNNR
GNFLELLKWLAGNNENANKVVLNNAPGNCILTSPRIQKQVIRCCSMETTSCILKELGDEHYAILADESSDISHKEQLVVC
LRYVDKLGGVCERFLAVVHVAGTSSLQLKTAIQSLLTSHHLTLTQIHGQGYDGASNMKGEVKGKCWLPNLFGQVSRLLNI
VGVSCTRHDMLRDVRAQKLKKALNLGEIASGSGLNQEMALARPGDTRWGSHYKTILHIIDMYDTIREVLITIGKDPTQRE
DWPIIHAMVLAFESFEFVFNAHLMLVILGYTNEFSNSLQKRDQDIVNAMSLVGLAKKKMQQMRFNGWEGFLGKVTSFCIK
YSIDIPAMDAKYVPHGRSHRFYPYQTIDDHYRREVYIGVIERIHQELENRFDEVSMELLLCMSAFNPTDSFASFDAQKIL
RLASFYPKDIEGSNLMKLELQLDTYINDMREDHRFKGLNKIGQLSIKLVETKKHDLYDLVYLLLKLVLILPVATASVERV
FSAMNLVKTKVRNSMSDKLLNNCLVTFIERDMYMRKT
>TAG1_tp#DNA/hAT-Tag1 gi|3283026|gb|AAC25101.1| putative transposase [Arabidopsis]
METEHDENYEDIAAANRSIRGKSDIAWSYVIQSKDEKGKTVLECAFCHKKKRGGGINRMKHHLAGVKGNTDACLKISADI
RFKIVNALKEAENKKKQNIVLDDTNLDGPEIEDVDGDDIRVDVRPSQKRKKQGIDLHDYFKRGVHDQTQPSIKACMQSKE
RIHAVDMSVALWFYDACIPMNAVNSPLFQPMMSMVASMGHGYVGPSYHALRVGLLRDAKLQVSLIIDKFKSSWASTGCTL
MADGWKDTRQRPLINFLVYCPKGITFLKSVDASDIYASAENLCNLFAELVGIIGSENIVHFVTDSAPNYKAAGKLLVEKF
PTIAWSPCSAHCINLILEDVAKLPHVHHIVRRMSKVTIFVYNHKPALNWVRKRSGWREIIRPGETRFATTFIALQSLYQH
KEDLQALVTSADPELKQLFKTSKAKVAKSVILDERMWNDCLIIVKVMTPIIRLLRICDADEKPSLPYVYEGMYRARLGIK
NIFQEKETLYKPYTNIIDRRWDRMLRHDLHAAAYYLNPAFMYDQPTFCEKPEVMSGLMNLFEKQKNDSKTKLFQELRVYR
EREGSFSLDMALTCSKTSQPDEWWRYFGHDAPNLQKMAIRILSQTASSSGCERNWCVFERIHTKKRNRLEHQRLNDLVFV
HYNLRLQHRSKRKRSYDPVDYESIDKTEFWVVEEEEAGELEYDELENALAEEYPKDLEDTNPETSNDFDEDFTLPPEEDV
WNDEEDNRD
>hAT-2_DRh#DNA/hAT-hobo 533-2380 via tfasty with hAT1_DYa_tp, 3 frameshifts and 2 stopcodons.  [Drosophila rhopaloa]
LAGELKPTGSRGRSKVWDTFSRLATANGIMTTXAVVCNICKNIFYKFEKSTSNLXKHKCYIMANSRKRSLPVVDVPSETK
KKCTNLATEWTIKNGRPFNLIADTGLKNLAQFFISVGAKLGENVNIDSVLPHPTTISRNIGALYDFHFNEVRXEIKEQKQ
YGYSITSDFWTDDFFKESYISLTMHYVKEGILKNRLLAVKSMGGVSCTGKKYKMLLEYIIFNENIKIFLGNEIKNKIARI
LGDFGCDLLMDDPIIVTDRGANMKAAFNGLSAIHCANHLIHNVIGKVVKEVPELLDLVNRCSKLVKYFKKSGQNWNXTST
LKSYCPTSLKSVELNWMEISQILVEKNEISRISDINLINISGMVNLLAPFESCSKKLEGSNYPTLHLTVPHINNLKKISS
PNDNDIKIVEKCKLSLLEYLDSIVLENLKKYHNIALFLFPPTNKLTKFTEIEKEQTLKDVEEMMVNIHLNSENDDVEXLI
TTYARLGxCIXRFNSEPQSTKNFSYIQDELKTYKNVNKAYTEDFEVLEWWxNNKDRFPLLYQISCKILAAPASSAASERA
FSVAIHTHEXYICVYVPVMKFHSLYSKXTAHQNTVQCVDYCTPILLYSSTAVQLWNE
>hATx-21_SM_tp#DNA/hAT-hATx 421-2433  [Schmidtea mediterranea]
MENMKFVQHSKGGDENSIWFYFLKEEKGNYAKCKKCANFIKTGGGSTSGLHTHLKTKHEINLRKRAGAEPVAGSSSQCDK
VNPLTKITKYFRNTKDDSLAAVLARMTARDGLPFRVFITSDDLRKSLKALNLSDELPKSANTIRKIVIDYSEKIRQLLIN
EISDRKLNGKGFSITFDEWTSLRNRRYININLHSENCFWNLGLLRINGSLPAVKCVELLSDKLNHYGLSLEKNIVCLIND
GAAVMXKVGKLVPAAQQLCLAHAIQLAVVDVLYKTSTTEDTNNSPNESIYMDSDSETEECNNYDASEGDDYEDGLVMEYN
IQGRERDIDLNHNQLGPLIQKVRKIVKTFKRSPTRNQVLQDYARVEFGKEYCLILDSKTRWDSLIVMLERFYKLKSSIKK
SAIDLNLNINFTDADFETVSLTVSTLLPVKLAVESLCREDANLLSADTTFKFMFDSLSEIKSSLSTEVRSALMKRVFERR
TELSDLIGYLHKGYTDSSQIINRTFNFPRISKSTILKSLLDIVNQMDLWNQNTALLEQSNEILDSDVNEPEEDLIELVDK
SESSLKKKLDEAILKQKNYTVIRKKPERAGDLTKCLKKEISLFDDEGVRGKYLEQIYNLLLTIRPTSVESERAFSAAGVI
LNKFRCRLDDKTLDALCFLRGHFKGSSKSS
>hAT-6_DBp#DNA/hAT-hobo 62-1847 via genewise with Hoyak1_tp, 1 intron (696:753) [Drosophila bipectinata]
IKEKILNGDYQLVEKRGRSNVWEFFAKIKDENGEEIDGFVACKMCYTVMKFSGSTSNIVKHKCYTINSHKAQNAALMEVN
PEVKQEGVEILTEWAIKNCRSFKIVEDSGLKKFXSYILKVGATFGPNVDVEKLLPHPTTISRKISSMYETHFGPIKQEIV
TNKCNGYAITSDIWTDXFLKAAYISCTVHYIKDGVLIERLMAMKSMKDNACTGANILLKMDEILSEFDCNLGNDKPVIVT
DRGSNMIAAFRDHNKIHCINHMLNNTVEKAIKEVPEMGEMVTTCSKLVKFFKKSGNNSLLGFTLKSFCPTRWNTVFYLIK
SIEANWLDISNILIEKNQIGRLEGLHIGELSSVAKILEVFENVSKKLEASKYPTIHLVIPNNTKLKKTCLSGTNDSKIGE
SLKIALFTNILAVXEPNIEMWHKIALFLFPPTNKLKNFEESEKLKIITECKLIMESFKDYTNIAEAEWKEEDDEFSEFVE
EASXKPGVDDVEREITGYSNINVPYATNFDCLGWWNMHKNFFPLLHKTSSKIFCIPASSASSERIFSDARNLITEKRCIL
ANNSDNVNKIMFLHSNLN
>HAT-25_SM#DNA/hAT-Tag1 691-2610 [Schmidtea mediterranea]
MPHMKGKEWDHVIVLSETANNFQVKCIYCSKVFWGSGNRIRAHMGIETATGVAKCVKVPVEILECFKAADAVKQSEKQEN
ARKRNLDKAVTSTSLSSSSAKQPKLTNMFKNIEKAEVDESIARMMYSTGISFNVVNNKHFREMCSQIGKFGPAYKPPSDH
PIRTTLLDKEYAKVQNRVQTSIFTDLNLKMGTIVSDGWSDAQQKPLLNILLVTSSGSTFIESIDTTGNTKDSGYIAQVIM
SSIEKIGPELILQVITDSAANCKAAWQIIAKKFPKIVCGPCSAHCLDLLLEDWGKLIWISSILKDVIAVVKFIKGHDGSR
AMLKKHSPNKFLLHPAETRFGTCVIMTQRLVELKDALQEMIVSREYKAWLSNKSYKIAGEEVSVSVLSEPFWKKCQLYLD
INKPVFELLRLVDGDAPVTGKIYFKMFTIQESINNFPNISQAQRKELYDSFARRWAMMHTTLHAAGFLLDPEYVNMAQHA
NDEVMTGFYQLVELLHPDVEEQVIITNQLNNFRSSQGIFARPVAKAAASTMPAHQWWHSFGSGVPELQRFAIRVLSQTAT
SSAAERNWSLFGFFQNKRRSRLNPKTIEKMVYIHANTRLMDKVEEVDYVEENVKWNEPNDDISDTSEDSVQEESDSPDD
>Hoana8_tp#DNA/hAT-hobo 352-2256 (after Helitron insertion removal)  [Drosophila ananassae]
MVSLWGRNWLSKILSAYLVSFSYFNHSLLDIRVSNMTSEAEAIPRKITSVELKTIPRGKGKSLIWNILYEIQREDGSLVD
GWIFCSTCEKVLKYSQKQTSNLSRHKCCVQLKNPPEEKNVADADKKEAIKKCTSWIVQDCRPFTAVSGPGFKELVKFFIK
IGATYGSNVNIEDLLPDPTTLSRNTGKEAAEKKVELAQNLKNAVNAGDVSATVDMWTDNYVQRNFLGVTVHFFKDARLQS
LVLGIKSMEYQRSTADNISRKLRTLFADFNIDNVEKVKFVNDRGSNIKKALEEYTRLNCSTHLLSNALESSFNEATDLAD
TLDTCKKVVKYLKKSNMQHHLQTTLKNPCPTRWNSHYTMLKSIVDNWAEVNKIINETPTAPVLNENLAELKSLVALLEGF
ERVFKELQICKSPSIFFVVPSIAKIFELCETQMTDFLSIAKLKENLLNHINAIWKENLSIWHKVAFFLYPPATVIQQDLH
EIKSFCVYQMEINTAENDQDSNSSFILNNNNAMRLTPPSVASKQSLSFLVFSNLVHPIDYTSETPLEELERYCRERVALT
EGFEPTDWWNQNKNAYPRLSHLALQVLSIPASSAACERVFSMAGNIMTEKRNRLTPKSVDNIIFLHFIFKNSREA
>MuDR-3_PGr#DNA/MuLE-MuDR 1909-4994 via genewise with MuDR-2_PGr, 1 intron (4252:4365), 3 frameshifts, 1 stopcodon [Puccinia graminis]
LHSLAPPPELSYRTRAQLDDAAQQWALEHGYALEKTNTTTRRGEDRVTFKCDRSGEPDEPNPDKLGKSKKIGCPFRMLGN
FYKRKGRYRIKIKNPNHNHPASEDPYIHPIHRRLTDSQKEKVTELTNAGVAPLKIKSALIQDTNTPSHATLNTIYNHRNQ
MRIDQLQGRTPIEALVQQIRDHQFYFMIDSVEGHMTSFFFAHPRSLELVKRFPTTILLDCTYKTNKYNMPLLHIVGMNSC
NRSFSVAFCFLSAEKEPNYTWALEHLHLAMDKESPSVIVTDHEQAVINAIKKVYPNANRILCSWHIWKNIEKNCRKHFNS
EDKWETFESAWKKLRLSPTLKEYEENYAELSKLWNPDTAAYLISVVLPLKEHFVAYLIDRHPHFGNHITSRVESLHAYLK
RFINSSTGSFSAVVKQIHQSLESQLHERYIESAQHQYKRLTGLPPSIANLNGIISHFALKIVHSFHVAKAPTTTCTGNYS
SYMGIPCIHQVHNATLEGTKFTADDFHAQWHVKTDLAVSSSFLSSRESQxILQMYSDLFCSPSDHLKVQLSDNQDATETQ
QKSHEDAFLSEAFEKFQSLQPGEQHFMLGEIHKLLDGTHATIPLEEPKFDKNHRFKGRPKGSKRKHKSTSSTKRDPSGFE
YVEGQKKKRGRPKKVAKLDEGPKRKPGRPRKKPAKKDDTDESEVRIAYILLKIFPASDSFLRRPWKQTERVRMKLQMELE
PYVKTYSPTEEHSEEEPNPPTVKKPLRIRPIKAVKQKPEPITEADEPDPxEPHPFERGTDLDIKPAGAIAHILHVHDVRG
DGNCGFRAVAVSLGRESDEWDSIRKEMQKEFESNEAYSDEKFLENVWGAGDDRKDVVESLAWRDKEQQAPLKYWMTFPAH
GYLIADTYQRPVILLSEKMPATYLPLSHTQRNNPPICLILLPDYSHFISFTFKAEIWPCPRIDTFWRHYVRDEALGWEDY
IQAHVELGQEVLYPPVRRSXRFKKAPVDVD
>TSESSEBEII_tp#DNA/TcMar-Tc1 704-1652 via tfasty with Tc1-1_AG_272-1270, 1 frameshift. [Anopheles gambiae]
MGRGKHCTDYQRHIIKRMAAAGIKRRTIEFVMERSRTFVANALRTTETRKSPGRPRKTTEEEDRKIINMKKNPFSSAPEI
RGRLKLTVTPRTVQRRLVSAGLLARVPRKVPNLTPAHKNARVLFAIEHMFSDEEDWRRVLWSDESKFNRQGSDGRRLVRR
PVNCALDPKYCFKTFKHGGGSLMVWGCFSYYGMGPLVRIHGNLNRFGYRDILDTHLLSHARKNLPRSWMFMQDNDSKHTS
GTVQTWLADNNVKTMKWPALSPDLNPIENLWAIFKKRLGKNIPEDLDHLFDHMQEVWSKIPPETIQNLVMSMRQRD
>TCB2_tp#DNA/TcMar-Tc1 277-1347 wised with genewise (one intron) and Mariner36 [Caenorhabditis briggsae]
PDPSEKKNISQDIRKAIVIGFRSGCSKDLLAQQFNVTKRAIEKILKQFRDEGALVERKSPGRPRITSKNMDRNIVRVSRE
DPQRSSTDIQMVVKTPNEVTPSLRTVRRRLQDAGLHGRRPAKKPSISKKNRIARVAWARAHLHWGRQDWANHVFSDESKF
NLFGTDGIKWIRRPVGCRFDPSYQLQTVKHGGGSVMVWGCFSGTSIGPLRRITSIMDRFVYEDILENTMRPWARSTVGRA
FVFQQDNDPKHTSKHIKEWFRRRHVDLLDWPSQSPDLNPIEHLWEHVERQLRGVRASNANQKFDQLQDVWQAIPMSVIDT
LLDSMPRRCQTVIDAKGFPTKY
>Mariner-3_XT#DNA/TcMar-Tc2 171-1464 via tfasty with SMAR6, 1 frameshift. [Xenopus (Silurana) tropicalis]
MSAKRKSYSVEYKKGIVEDSQGKNLTAFCKEKKLDIRMVRKWRAEYDNLSLHVDRGNAKKRKCGSGRQPLFPELEDIICE
WIADRRAKALVVRRADIQAFALAMAPQFEISPEFKASQHWLDGFLQRYELSLRKSTTLFKLQDAEVIKRALAFKSFVDGI
EFSKYQPCNMIAMDETAVFMGQGAQTTIEQRGASSIYVPSTGYESSRVTCILAIRLDGKKATPLIITKGKKDKIERVSGI
YVLETEKAWCTQAVIRKWLDLMLPLVLRGGQRGLLVWDSASTHRAKDMKNFLAERKIDQIMIPAGMTAYLQTLDIAINKP
FKDHLRMEINDYIENRMTRNQCGNFVKPSLQEVVIWVKNSWNKITDSVVTNALRAGYMDKSCSFNESSIARHERLGSMVL
KEMESQEIQDGIPGLESYDDLPEEDDLTVFE
>SMAR8#DNA/TcMar-Tc2 586-2309 via tfasty with Tc2_FR5_tp, 1 frameshift.  [Schmidtea mediterranea]
MSNNLKRKNYSIKHKLKILNEYNAGVKGSGWMALSKKYNIGTSILRGWHNQKAQLLQTLNNQSVQIKVARRLPGGGRKLE
FPEIENEVLQWILDRNSKGLRVKDKYIQLKSQEVCERLKIIDTENNSKWINFKHSSGWCKRFKNRHELVSRRQTTTKKIP
ENVNAIVSNFLKIIHAKIEEKQIKMCNIINFDQVPRYFESEPKTTITQKGCREVLMRKAGTSHKRFTTTLCITLEGKFLK
PHVLFSRFKKKPIVNKKCLVNVNRTGMFNDDILKQYIKEIILCRPQTSLARDPVLLIMDSYGSHVKLHESKYLEKFNIFV
VLVPSNLTSLLQPLDVGVNRSFQAYYNTRYDEYISEALKNPEMQTRQGNPKIPNYKIVSDWVVDYISTKDSSFIVKAFKC
CGIVPKIDFNIDALHTTLQKILQPTFNYDDWIHENEDLIAENSNFFDNEDCEDWFYPEEVSTSFFRCVHQIKDKNSSFSV
FMNNYMPQIISYIKSNPDTSDILDEHDEELISRGENSSSYAEIYATALKEKWCIKVVEVDENCVQVENFTYDVESPTKSI
LLVRNENFFALNLKA
>Mariner-6_AMi_1p#DNA/TcMar-Tc2 656-1948[Crocodylidae]
MPKRKSYTFDFKLSVIDYAKKHGNRAAGREFSVDEKSVREWRKEEDILKTLNPRKRARRGKHCKWPTLEANLKEWVVAQR
ESNKVVSTIAIRQKARVMANEMKITDFGGGCNWVHKFMHRNNLAXRSRTTVGQKLPDDWEEKLTKFRDFVRKECRVHNLC
PADIINMDEVPISFDVPATRTVDQRGKKTIAISTTGHERTNFTVVLACTASGVKLKPMVIFKRVTMPREKIPNGVAVICN
KKGWMNEDIMKEWTERCFRTRQGGFFAPKSLLIFDAMAAHKHSSVQKQINKAGAHIAVIPGGLTCKLQPLDISVNHSFKC
FMRKEWEKWMSQGVHSFTPSGKQRRATYTEVCNWIVAAWRAVKPSSIINGFFKAGILDGASGEESDYTDSEDYADELDDA
AFVDAYFGESSYDTDFEGFPASEKEEAPNWV
>Tc1_XL_tp#DNA/TcMar-Tc1 199-1185 (misses N term) [Xenopus subgenus]
LCFITPEFNFKGYKAISKALGLQRTTVRAIIHKWQKHGTVVNLPRSGRPTKITPRAQRQLIREATKDPRTTSKELQVSLA
SIKVSVHDSTIRKRLGKNGLHGRSPRRRPLLSKKNIKARLNFAKKHLNDCQDFWENTLWTDETKVELFGRCASRYIWRKS
NTAFQKKNIIPTVKYGGGSVMVWGCFAASGPGRLAVIDGTVNSTVYQKILKENVRPSVRQLKLKRSWVLQQDNDPKHTSK
STSEWLKKNKMKTLEWPSQSPDLNPIEMLWHNLKKAVHARKPSNKAELQQFCKDEWAKIPPERCKRLVASYRKRLIAVIA
AKGGPTSN
>PARISa_DK_tp#DNA/TcMar-Tc1 393-1436  [Drosophila kikkawai]
MPGKRVDENTIQLVYYNHYKGKSAKELSEMFNIKLRTVYNIINRAERENRLNLNNSTGRPSKLTRRDQSKILKTIENKPQ
TTLRQLAEDIKNDCGKTVSHETVRKVLNAHKYSSHVARKKPMLSAINIERRLNFSIAHINQPSEYWDDVIFCDETKIMLY
THDGPTKVWRKPNTAFQQKNIIPTVKFGKLSVMVWGCISSQGVGELRIFNEIMTKEFYLDILKNELSKSANKFGFIDPQN
PNKLKYKLYQDNDPKHKSLLCRTWLLYNCSKVIDTPAQSPDLNPIENLWALLKKKVAKRAPTNKSALIKAIQEEWEKIPQ
YYDLKGLINSMSRRLHAVMDAKGLHTKY
>Paris_tp#DNA/TcMar-Tc1 382-1440 [Drosophila fruit fly genus]
ELLTMPGQRINENVIQLVYFHYHKGKCAKELAEMFSIKLRTIYNIINRAEKENRLELKHSGGRPAKLSRRDHSKILKQIN
ENPQTSLRQLALDLKNDCNKTVSHETVRKVLKMHKYSSQIARKKPLLSAVNIQRRLNFSITNVNKPAEYWDDVIFCDETK
IMLYYHDGPSKVWRKPNTALEQKNIIPTVKFGKLSVMVWGCISSKGVGELRIFNDVMTKEFYLDILKNELSRSAIKFGFV
DPQNPSKQRYKLYQDNDPKHKSFLCRTWLLYNCSKVIDTPAQSPDLNPIENLWAFLKKRVGKRSPTNKNALIKAIQEEWI
KIPEIYDLHNLIQSMSRRLRAVMDANGQYTKY
>SMAR5#DNA/TcMar-Tc1 278-1296 via tfasty with Quetzal_tp, 1 frameshift and 1 stopcodon.  [Schmidtea mediterranea]
MTARKSLSDNERASIFRWKKEGMKQKKMAELLQVTPRCISYVLKTYTEQDFKSKRNNSGRKKSLSDKELVELKKIIDVDR
FISGPKLANKVEKKFKKVISSKTIKRFAKFVGFKAMRPKKVPFISKKNKIARLEFAKKFIVMPKSYWRKIIWSDESKINL
FNSDGITYVWRRAGERLKNKCTRKTVKHNGGSIMVWGCIGENGVGNLWKIDGKMDSLKYIKILQENLLPSVEKLNLSDFV
FQQDNDPKHTSKIATKFFEENRIKKMQWPAQSPDINIIEHCWAFVxKNMVKLRLRNLNEAFIKIKQIWENIPQEFIQKLV
DSIYERLSEVIRNKGGATDY
>Tc1-14_Xt_tp#DNA/TcMar-Tc1 362-1393 [Xenopus (silurana) tropicalis]
MCIMARTKEVSEDLRKRVVDAHKAGKGYKTISKEFGLHQSTVRQIVYKWRKFKTVVTLPRSGRPSKITPTARRLIVREVT
KEPRVTSKQLKACLTLANVDVHESTIRRTLNSNGVYGRVARRKPLLSPKNIADRLQFAKDHVDKPEGYWKNVLWTDEAKI
ELFGLNEERYIWRKKNTAFQHKNLIPSVKHGGGSVLVWACFAASGPGRLAIIDGTMNSELYQRILKENVKTSVRELNLKR
QWVMQQDNDPKHTSRSTKEWLKKNKVNVLEWPSQSPDLNPIEMLWKDLKRAVHVRKPTNIQELKLFCMEEWAKIPPSRCA
GLINSYRKRLVAVIAAQGGHTKY
>Tc1-7_Xt_tp#DNA/TcMar-Tc1 369-1382 [Xenopus genus]
MGSSKQLSEDLKMKLIDAYKAGEGYKKIAKRFQLTISTVRNVIKKWQLRGTVEVKARSGRXRKLSERTARMLARKAKANP
HMTAKDLQEGLADTGVVLHCSTVQRCLHKHDLHGRVIRRKPYLQPHHKRQRLRYAKQHLDKPEAFWKQVLWTDEVKIXLF
GHNHQRFVWRKKGAAFDEKNTLPTVKHGGGSIMLWGCVAASGTGNIVRVEGRMDSTKYQQILDANVKQSAKKLKLKRGWL
LQQDNDPKHTSKATMSYLKKSKLKVLEWPSQSPDLNIIENLWVDLKHARWPKKISELEVICKEEWAKIPTTRTERLLAGY
KRHLQAVICAKGGVTKY
>Mariner-3_AMi_tp#DNA/TcMar-Tigger 345-2135[Crocodylia]
MASNMLFTASKSKGEKRKRVVLTLMQKIDICRCLEKGENRNVLMKEFSVGSSTIYDIKAQKEQLLKFVSSSETSKAVEKC
RTLHKPKLEQLDSVLYEWFSLKRSEGAPVSGPMLIEKAKDFYKQMDLTEPCAFSAGWLSCFKLRHGIRRLDVSGEIKSAD
HEAAEKYCGFFNKLVAEHDLSPDQIYNTDETGLFWRCLPNSTLAGAGESSAAGFKQNKDRITVLTCANAGGTHKVKLLVV
GKCNRPRAFKGITHLPVVYKAQSNAWMDKGIFYDWFHHVFVPSVKEHFRKIGKPQDSKAILLLDNCRAHPPECELVSGNI
FTIFLPANVTSLIQPMDQGIIQNMKCYYRRDFLRKLINHEGTIQNFQSLYNIKDAIFNVACAWNSVKSKTLRRAWRKLWP
SVMFAEGSSDEEDFEGFNVRHRKNTIAQILEVVKDAPSTNPVNKLKESEIEEWVEADKEVEHVFSDAEIIESVVNPEKSK
VTEKDSEEEDFSEEEKISWASAASYIDNFIKFAERQSCYSAQEVMQLHIIHSDFMQKRQAASRQADIRDFFKKASRACHK
ASTESAPSPSPSTSTIDVDDSEALQDPQVPLESPKRQ
>Ag-CR1-7_gag#LINE/CR1 233-1228 [Anopheles gambiae]
MADHCLTCARASSSEELTYTCDGFCKRWAHRSCLGVSSAAVKDLIKEDSQILWLCHNCSENRRNGHSVMIAELTAALTDL
KSQLSAEFQTRMDAAAESLKRTMLSSLDQHADTRPASHTSTFTIQRKTSTSKAPVLSSTPATELSNPAKRRLMDRSPPSV
VATSPLLNGTAPIATSAHATLLLPPETPKFWLYLSRCRPTATILEVETFVKEQIGIEDVTVFKLVPLNRDVRTLTFSSFK
VGLSPDYKEKALLCSSWPIGTVFKEFTDRRNAPISTLSTNPLTTTTTAPTNTHVPVTTNTDVSIHMETNNNITASTNNTA
VSTSPPRSSQQQ
>17562164_Cel_pol#LINE/CR1 gi|17562164|ref|NP_504664.1|  predicted CDS, reverse transcriptase family member (5H34) [Caenorhabditis elegans]
MKLWEFMLSTMIFHLTIVTKFFGRSKCPNSEPIFSGIFQISLLLRFDLRPISLTSHLCRIYERCLLRKILQYLEEKQYWN
SAQHGFRPRKSTITCMLEAVNDWTEALDKGNQVDVIYLDFAKAFDRIPHCQLLEKLISLKINKHLINWIIAFLSDRTFQV
KVGETLSNSKHAECGVPQGSVLAPLLFDDLKLYTDIPSNSSNSHHLQKAIEIIVQWSKTTKLALNNDKTVCISLGKNTTD
FQYTIENSPIVRNTVVRDLGFQIDLNLSFSSHWKKALVHAKSMIHQIFLNYCSKNTRLHTLLYKTFVRPILKYGTEISSP
SKKQDIKAIEPVQNSFTRKLYSRQKGKYIRTDDPECSSTRQSFRPFNLRSSP
>CR1-1_CQ_gag#LINE/CR1 158-1822  [Culex quinquefasciatus]
MQCYVPTCSSPFDQQYLWNCTGICNRKFHAACIGVKRGSEDDLQLHVLPICSLCRNNLHMEIDIRKIMQHHLEGSHMILT
HIKTNDKTNQEALNELHNKIIGLQEEIKKSAEIASRILSAVLTQAPAMDFPLNEVRKAFEDTTSDQNQKLAESFCRIQEI
TSSHRDDIIKTIASAEKCPSDIILAVHDEVRALTSSINKLQDNEIEVRQKSLAEELNEQTVLEIESGWRLIGSKKIWKPD
WTDFDARQRTRRLQEKEAEKARRRNRKHRQQIQHQQQQQSQQHHQQRRQQQHLQQQQSHQHLRRQQHQTNCNSDAGRNPS
TPHFNLKDNQFDQDNASSSNFFTHSSTKLSDKELLDQARVEFSGQPPTTSNSNFINFRKGETINPYRKEKTPIVPPLNAT
TPQPAKTSSQTPEVTDSMFCLDPMKPPIVRLTEQSAVGDGRFLLARLREIKVYDNLRLYLAYLKDQKPDVCIDGLTLTSM
HVFFASNGLPTEPEHLMNIFMEYNSTIGISPKQTLTDLETYRKYVTTRRLQYLQHSREAANKFYLPTTSSNFYKH
>CR1-1_DPer_pol#LINE/CR1 1556-4386  [Drosophila persimilis]
LTSLLVTYQNVRGLRSKLSILFRDSVAFASHVIVFTETWLKPDILSSEVLAGRYTTFRKDRSSRRAGGVLIAVDSYFTSE
HFTVQVQQELEFLCVKLILPAFAIFITCSYIPPSSDISIYEQHLSALTAVASSLSDKDRMIVLGDFNLPGTVWSSVNESS
ILVPMSRHDFVDGLLDLSLSQVNHVKNSLGRLLDLCFVSDPTIVLLTRALPLTIPEDAYHPTFEVSLDIGPTVLDRSSRL
PERVRCFRKAEFAKLNNLIRDFDWSALYLCTDVTKGTNIFYNALGTFFDSCVPLSCPIRSGKPPWFTKELSSLKNLKSRL
YKKFQEVGSPTSHSRYVIARSNFSVLNAQCYKNYLSRCRIRFSQDPKQFYCFVNSKRRTSAHPSSLSFCNTSANNDQAIA
DLFAQFFQTTYSEERYSGQPYPYGLPRSNGIFSPLLNEYSLLQDLRLVKPVFSPGPDGVPGCVLRYCAEALCGPLLKLFT
LSIDSSCFPPIWKESFIIPLHKKGSKSDAKNYRGIAKLSAIPKLFEKVLTPHLQHLCKSLISPTQHGFIRRRSTTTNLLE
FTSFIIKGFQGNLQTDVIYTDFSKAFDSVNHSLLAHKLDLLGFPPNLLRWISSYLCSRSQRVLFKNSLSLPVKVSSGVPQ
GSHLGPLLFTLFINDLPSVXTYSRVLMYADDVKLCVQYKDISFHSRLQSDLNSFQSWCCANLLHLNASKCKVMTFHRSNP
LLAPYTLFGGSLERITLVDDLGVMLDPKLKFSEHISTMVNKAMGVLGFIKRWSKEFDDPYITKTLYTSLVRPILEYGSCV
WCPQYKVHQDRIESVQKNFLLFALRGLNWDAGVRLPSYSSRLLLVNLPSLVNRRKMLGVIFMHNLIRGDIDSPDLLSRIN
FTIPIRLTRNFIPLFLPLCRSNYSLHEPFRVLCSDYNSLYHIISSTNSLPLIKLLILTHLSSN
>CR1-1_DEl_pol#LINE/CR1 982-4625 via tfasty with CR1-1_DBp_pol, 1 frameshift. [Drosophila elegans]
MHKLVLRPLALYIVLSNQGAQPQLFSHQQQYGALFGVSLSHHHAASYAQSLLTAVFSDVPNAYDSSALLILALYPSPAAS
LLRFTRGWLSDCVELSLSSHPYLQQQRNRMTLPFSLCSSLLEKSPLLYSALFRVALPSPPAASALRPTFGWLTGVFGVPL
TSSWLPTGDFKILHFYGRLLSPQVSLLLPLFDDALSALRSQGHSSTLEVSASWSSTIGRMDCNYNLRNDNLPLPIRIRTG
ILRTALNGFFGLARQRPHVDFTIPFHDFRYETMATVSENSSVKRIGTNCLKIYFQNISGMRTKTQSVFMSTSNSGYDIII
LVETWLNPNFNSNEFFDTNLFHVYRKDRDFSRMKCERGGGVIVAVRRTFSCCAAVLSNEDSLLDQLAVEVSGLSGKTVIV
ASYIPPGSDFTLYQAHMNNIASLHASIDDSVGLVVTGDFNLGSVVWSCDPQSHAMVPGNVHQPHEIIVIDDCYSMGLTQI
NYIFNDLHRLLDLIFINSIVHSSVSLAEFSISSCDVHHKPLCFNIEFYNFLPVVNFIPMYNFDHASSVAVSDCLTSMDWV
SLLSNACIETNYNNFLVALKNILDSXCSTKVRGSYRLPWYTKGLQKYKNLRNKFYKRFIRWGNPLDRDRYRQHKREFEFL
NKFLYNQYISDIENSLKSNPNVFWRFINSKKSYSSIPSTVSYNNTTANSGTNIANLFASFFSANFEPACGSLEINDEDIS
EAISQFDDSIKPDIDGVSSFFLKKFYHSLLQPLKMIFSSSLLQGKFISRWKIAKILPVHKGGSKSEVSNYRPIAKISNIA
KLFERIVVKKLSFLIRTYIDPNQHGFMPGRSTTSNLAIFAKHCIQAFELHSQVDTVYTDFAKAFDKVSHSALQAKLFKLG
IHGSFLNWISSYLANRSYHVEVSGFVSNLFEATSGLPQGSSLGPLLFIIFINDICFCIQSAKYLLYADDLKIYMPVNSLN
DSYLLQSDLNKISLWCIQNNLPLNLNKCYVVRYSKCILNILSTYVIDNHSLSALTEDSKFLFINHMNHVLPKAYAMFGFV
KRNTILFKDPYSRLTVFSAFVRSRVEYASFIWNPSSVVHINRIERLQKKYLKFALQPLNFSEPLPAYSSQCCLLHTCSLE
DRRSIASLLFINDVIIGNIDSPFILSSIKFNIPARSLRTIIPFFESAARTNYARNEPILRTLRLFNSLPLSIRLVWGSKK
DVLRQLLREYFLINT
>Ambal-1_TP_gag#LINE/Ambal 246-5597 Rather a big first protein to just be gag [Thalassiosira pseudonana]
MSGDRQQPARGGEHHGRSHGGRSHVTWEDGYGRHGEAENLGNRWRYGGRGRGGRGRGRMHGGRGGRSGRGDYYTFANQHP
PPPPQPGHWPYFPPPPQAPTPPNQPYLGPGTSLLTANPHTTLPTVNDTTTTDVGEFTLVDGKHSFSPPKKAKEPESASKT
NTSSTNRFDPLSATSESATTAESVVTASESPKRGTKKRKSKQTRKNNGEDHFTEAMEQARQGGNTADRGETNRRSDDNGK
QRKGKGARKPTRDHQHLPPNPIMIREPTEEQARAYGAIVGKSTVSWDDLEDVIRVDGRDAAMSLLIALALVGNGNRVPPG
MTTHRCDPKKAYLYLLGENQVNLMKMFNNEEYGNLKRKVINEWDHTTTTGLRQDLVPVEYPKLFRTYQREEWQTDHPKRE
ILLEMMERTVDHWYCGDKEVIMDSVGQLTTSAIRNLLADRDGIFQHFNSGNRAQSIVYRPPYLVTNEALDIKLTQMEREG
TIVPMNELGDILRKQLTSPAEAKRELLDLLTTYVLEKIPSMSKREAMQTLEHETDEFLMSLLKPESMMTHINVERERMRT
LRRPRKLSRGKIWGSGKHQSYEEQSYVMRVVTRTQAGTATLKGEILRRLMEVFHVIGYQHGHTFSLLPYQSNSGKDPIGV
YSATPELDVLEEHYLGGIGQPTQHGDNTQWKVFRFRCTSSIGLERLCAGELKRAGTHWANFDKVAAELNIWLFPESYAPD
DQRAVLLISGTHKLDDPVQLKKELIERLNEVNHPSVVDERMFSVSYSSVPQHREDGEAWGWCINTSAQNETMMLSLASRL
RVCEPTAAPITHQSIFIPATFRLTKGRYTSTEYDAALHKQQLSVHNTVYLRLVGVPFQADLYTLKALSANTLVTVGVAEL
PCYFKEQTIKNPYSRLVRGRQESEWFVLGQLSDAAAMKENAGRVVEYLQQQVMEWPGKISVQYDRLSLERAPEYLPQPPQ
RYWTSGSTNTPNCKPLAATTSAATTGLTTTETPAISQERQQDPSGSKPQYNPKAVTPNVERVLAPSEEFGNSFTPTEPPY
HIQRAREHHLEQLIQEQNEKIDRLERTLGVILEGAEKKEALLYRVEKALSAPNSPVELVHAQMSSQVSAMTMSIDNVSKS
AQGQRQAIDGVQRQLDGLTISLGEAISQVTVVASKVNDLGTASIATSTSVDKRLGIIEKSNTNWMENLNDIYHSVQSVGA
RMEQMEVNIKPVLDNAGSRANSAIVNMLCHTDFIQAHTPSEFDPENSETGQYLPPRPPPHAHSDLEVDAITPEHIRHLIE
DSGESLLPPTQGTCLGCGMDSLPPMATCQVCENEFHTSCHIPSDLLHPSTPKIDMCYVCFLALEKAVVIAQMKQCEVCRE
WIEKVKDVIFASVSEKRRKFLQQHSAVLRIGANTTADRFDEGQKRVQRELELLMAKHGTVDDTEEDLSEYDGSAFAEPEP
MKAMVPALNGADQTRVDGSDYTEDTAASSGVDANNDQPSQDLTSSPIPHTEARHESQRHATEEDDGTPTGLPPHGNSCNA
VTQPRCSDSGTDGVPPDDDKFREESLTSHAPPSPPLGEARDSLSEHGGPGENENGAAVDRTGNNTPGYNDGNDSGCNEAH
HDDEDTYSEESLTNHESPSTLLGETKAPASKQEDTMYLTPTRKTPPQYESSSDEEDSGHEMEATLAAGVQPTEGSVQSAT
NGGSEYEASILGQRINLTPGRETNDDESASSHDTEELTATLRSSTQTTVPKSGEDTDSDSPKAQAIETKRHTLPPQRRPE
RRSKRIQNQTDGAPKIYVDGDESS
>MarsTigger8#DNA/TcMar-Tigger 322-1950 [Metatheria]
MDLETKMKIIRKYEGRQKSSSIARELSLAVSIVNTMAKDAARIKEHTKGNACMKSTYLSKQREGAILEMEKLLTMWIEDQ
TQKNIPLSLMTXQAKARSLFEDLKVKYPEGTQVFTASSGWFARFKNRAGFHNVQVSGEAASADIEAAKKFPEFLQKIIDE
GPYLPEQIFNVDETGLFYQRMPSRTYISVEEKTMPGHKASKNRVTLLLGGNASGTCKLKPVLVHHSENPRALKGISEATL
PVHYFANPKAWITLIIFEQWFMHCFIPEVEKFCNDNGIPFKILLILDNAPGHPPHLDDFNENVKVVYLPPNTTSLLQPMD
QGVIANFKAYYLYTTFAQAIAALDADKDLTLRDFWKSYNIYHAIRNIAKAWEDVTETRMKRVWGKVCPQFVPDFRGFDKD
ETFEEVSNKIVKLAQELELEVDENDVEELIESHGEELSNEDLIELLAAKIAEEEREASEPEVEPKRFTTKQLAEAFHHLS
EFFSCIEKMDPNTSRFLKVQRLVEDNIACYRQIYEEKKRATVQTSLDSFIKKVAQPTTSDKG
>Mariner-6_Crp_1p#DNA/TcMar-Tigger 240-2048[Crocodylidae]
MATNTPSTSGGQKRKRVVLTITQKLDIIKRLEKGENRNGLMQEFSVGSSTIYDIKAQRAELLQFVTNSETSKAIEQRRTL
HKPKLEQLDKILYEWFALKRSEGAPISGPMLIEKAKDFYQQMGMTEACVFSDGWLSCFKLRHGIRRLDVSGEKKSADHEA
AEKYCXFFQKLVAEHGVTPEQIYNADETGLFWRCLPTSTLAGAGEVGAAGFKQSKDRLTVLTCANAAGTHRIKLLVVGKF
RRPRAFKGVVHLPVEYKAQPNAWMDKEIFLHWFHHVFVPAVKEHLKKLGKPEDTKVILILDNCRAHPPEAELVSGNIFTI
FLPANVTSLIQPMDQGIIENLKSIYRRDFMRKLLNYEGSLQEFQSQYTIKDAIFNVACAWCAVKSTTLRRAWRKLWAAVM
FAEGSSDEEEFAGFNVRQKKESLKEILDVLQNADPTNPLTKLKDTELEEWVNVDQDLDVAQTLTDAEIIEKVVHPERSTA
PEQDSEEEDHSEETKVAWATAAQCLETFLKFAEQQSSYSAQEVMQLHVVHNNFLKKRQLTCRQADIRRLLQRASAACVKD
PGSLCRGSDIDVDDPQEEPRSEAEPRSEATSDPEVPSEAAEGQ
>Tigger1_tp#DNA/TcMar-Tigger 426-2161 stopcodon bridged [Primates]
MASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRKLGLLRQTVSQVVNAKEKFLKEIKSATPVNTRMIRKRNSLIA
DMEKVLVVWIEDQTSHNIPLSQSLIQSKALTLFNSMKAERGEEAAEEKFEASRGWFMRFKERSHLHNIKVQGEAASADVE
AAASYPEDLAKIIDEGGYTKQQIFNVDETAFYWKKMPSRTFIAREEKSMPGFKASKDRLTLLLGANAAGDFKLKPMLIYH
SENPRALKNYAKSTLPVLYKWNNKAWMTAHLFTAWFTEYFKPTVETYCSEKKIPFKILLLIDNAPGHPRALMEMYKEINV
VFMPANTTSILQPMDQGVISTFKSYYLRNTFRKAIAAIDSDSSDGSGQSKLKTFWKGFTILDAIKNIRDSWEEVKISTLT
GVWKKLIPTLMDDFEGFKTSVEEVTADVVEIARELELEVEPEDVTELLQSHDKTXTDEELLLMDEQRKWFLEMESTPGED
AVNIVEMTTKDLEYYINLVDKAAAGFERIDSNFERSSTVGKMLSNSIACYREIFRERKSQSMRQTSLLSYFKKLPQPPQP
SATTTLISQQPSTSRQDPP
>Tigger3_tp#DNA/TcMar-Tigger 463-2304 [Primates]
MAPKRTKSTANVASKRPHRVTDLETKLKVIKDYEGGKSVMVIARQSGMSHSTIATILKNKNKVTEAVKGSASLKATRLTK
IREGPISDMEKLLMTWIEDQTQKHIPLSTMTITAKAKSLFAMLKEKAGPDYDVEFTASSGWFKRFKNRYSLHNVKVSGES
ASADVKAAEEFLETLDKLIVEENYLPEQIFNMDETSLFWKRMPERTFIHKEAKSMPGFKAFKDRITVLLGGNVAGYKLKP
FVIWHSENPRAFKHINKHTLPVYYRSNKKSWMTQLLFQDALLNCYASEMEKYCLENNIPFKILLIVDNAPAHPPFIGDLH
PNIKVVFLPPNTTSLIQPMDQGVIAAFKAYYLRRTFAQAIAATEEDTEKTLMQFWKDYNIYDCIKNLAWAWGDVTKECMN
GIWKKTLKRFVRDFKGFAKDEEVAKINKAVVEMANNFNLGVDEDDIEELLEVVPEELTNEELLELEQERIAEEEAREKET
AGEEKEEPPRKFTVKGLAEAFADLNKLLKKFENMDPNTERFSLIERNVHGALSAYKQIYDEKKKQTKQTTMDIFLKRVTP
PQEEPQAGPSGGIPEEGIVIIGDDSSMRVIAPEDLPVGQDVEVEDSDIDDPDPV
>Tigger2_tp#DNA/TcMar-Tigger 603-2483 [Primates]
MGPIRSATSDAGSAPKKQRKVMTLQEKVELLDMYRRLRSAAAVARHFKINESSVRTIVKKEKEIREAVAAATPAGAKTLH
FLRNTFLSRIENAAFMWVQDCYKKGIPIDSNMIREKAKSLYDNLKQKEGEGSKAGEFNASKGWFDNFRKRFGXKNVKITG
EAASADQEAADEFPDAIKKIIEEKGYLPEQVFNADESALFWRKKMPQRTFISKEEKRAPGFKAGRDRLTLLFCANAVGFM
IRTALIYKAANPRALKGKDKHQLPVFWLYNKKAWTTRTLFLDWFHRCFVPEVRKYLASKGLPFKVLLILDNAPGHPEPHE
FNTEGVEVVYLPPNTTSLIQPLDQGVIRTFKAHYTRYSMERIVNAMEENPDRENIMKVWKDYTIEDAIVVIEKAVKAIKP
ETINSCWRKLCPDVVHDFTGFTTEPIKEIMKEIVDMAKKVGGEGFQDMDLGEIQELIDTTPEELTEDDLMEMSASEPVPD
DEEEDVEEAVPENKLTLDNLAEGFRLFKTAFDFFYDMDPSMIRALKLKQTVEEGLVPYRNIFREMKKQKSQTEITMYFXK
VTPSVPASPASPSTSSTSSASATLRQQDQPLLFLLLLSLLNVKTMRMKTFMMIHFHLMNSKYIFSSL
>Mariner-1_DT_tp#DNA/TcMar-Tc1 393-1394 Mariner-3_DAn_tp near-identical [Drosophila takahashii]
MKKLSRGTENSIVSMTKSGCSTRTIAEKLKISQSVVVKVKKRQNVCSETVLNGRRRLLTDSDARLMMSNMRKDKLLTPKE
ASKELNKTVSRWTARRALGRIGYIASVKKNKPALSEKNVRARLKFAKTHKNWTIEDWKRVIWSDESKFNRFQSDGKQYYW
HRPGDKLQRHHVKQTVKHGGGNIMAWGCFTWWHVGPLHKIDGIMLKEDYLNILKTRLPNFLDKTAYPEGEITFQQDGDPK
HTAKIVKEWLAKQKFKVMEWPAQSPDLNPIENLWSIVKRRLGQYQSAPCNLHDLWRRVEIEWNQIPKEILQNLVESMPKR
IKNVIDNKGLWTKY
>Mariner-1_DEu_tp#DNA/TcMar-Tc1 333-1335 via tfasty with Mariner-2_DRh_tp, 1 frameshift. [Drosophila eugracilis]
MGRGRHCSAEERKLIRRLRDEGKTYKSIAVLMKRSRNFVTNALKPKKVGETRGAPRKTSSRADNRMVQLVKRDPFKSSRR
ISNEIGNIVSSRTVRRRLAMANLPGRIARKVPLLRPKNKKMGKQFALDRKAWSGPEGEKKWHNILWSDETKINLFGNDAK
RNVHRPKGKEFDPKYTCKTVKHGGGSLMVWGCFSWNGVGPIHRIDGIMDRFVYRDLLGTVMLPYAEDNMPILWKFQQDND
PKHASLLVREWFREQNVDVLEWPSQSPDLNPIENLWGELKREVGRSSCQNKNQLWDIVQKTWYSIPIGTCRKLISSMPRR
MEKVLKNNGEYTGY
>Mariner-2_BM#DNA/TcMar-Tc1 116-1195  [Bombyx mori]
MERFTGADRAFCVREFYKNDNSATVARRKFREHKGLHNFDDTPTLQTIKNWVAKFEETGSTLDKPRLGRPRTSRTEQNID
TVTQSIRENPTQSTRKRARALNVSRTSLQRILKKDLHMHPYKIQLVQELKETDGIQRQNYANEMLNRFTSFNNIMFSDEA
HFHLNGHVSKQNCRYWSPINPKLKHQKPLHSPKVTVWAAMSAHGILGPYFFEDGRGRAVTVTSERYVAMIEEFFIPELQN
FSGFNARTWFQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLTPMEWGYLKAKVYDTNPRSIEALKENIRR
EMTSISAVTCRAVIDNFRRRLQECRDRNGLHLGDVIFKK
>Mariner-3_PGr#DNA/TcMar-Tc1 1302-2330 [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MPQRPQKPQVAFEQKAIIVGMSKAGMKPTKISQQTGIGRTTVSAIIARSLARGTVARQPGSGKQPKTSKTDLHLLGRILK
ENPCMKMAEVRDQLAVPISTRTARRRAHDLGFKNRVAVKKPFLTETHERCCLQFAKRYKDWTPDDWRKIVWTDESSFEIG
KISRQVVVWRKPEDKYKKEYLTPTFKSGRTSTMVWGAFFGTTRAPLTIIPPGQRKAEQFIKNVYEKALIPFLEENDPNHE
LTLMEDNASVHTAKLSREFLDSYSIEKVDWPAQSPDLNPIENVWKVLKSNIQELYQPRSIPEMHEALHQAWADFPNDILD
HLIESMPHRMAAVIEAKGGSTRW
>Mariner-2_DAn_tp#DNA/TcMar-Tc1 455-2226 via genewise with Mariner-3_DBi_tp, 1 intron (581:1418) [Drosophila ananassae]
MLDMKPNTVGDIVRRFKNEGRVALIKQKGQPKKLTDREEXKYFTSIKKNPRLSAPELSAELFADHGKEVSAQTIRRTIKK
QGYNGRIARKKPLLSERNRKLRKNFAQEYSKKDESWWDDVIFLDESKFNLFGSDGKQMVWRKPNTELKKNNLRPTVKHGG
GSVMIWGCISTKGVGNLVFIDGIMNQDQYLKILKENLKQSAEKMGIANSFKLYQDNDPKHKAHKVKSWLLYNCPKVMETP
PQSPDLNPIENLWSELDRRVHQTPISSISELKQRLQEEWVKIGGEYTKKIIRNMPKRLSDTIKNNGYHTKY
>Mariner43_CB#DNA/TcMar-Tc1 519-1397 via tfasty with Tc3_tp, 2 frameshifts.  [Caenorhabditis briggsae]
MARATLLSLAEQAKVDVMKQLGLTLHEMSRQLTRSRNVIRKYLADPLHYEKKLKESAGRPRKLTSRQERSILKSVQLAQK
SERCVRTNSSCRIIKRSGVIVRQKMAKVPKMTDAHKAARLNFVKNHLTTKWEKLFSRRNFGGGSVMIWGAFCNGKKLELQ
FITTKENSATYQATLQKAVAPFFRNRRHTHTFQQDNASIHTSTSTRNWFVSKRIKVLEWPACSPDLNPIENIWGILVRRV
YRNGRQFKTVQELKDAIQAEWDALTDAELKNLVASMSSRIVEVIQNNGGETKY
>ITmD37D_Ele7_tp#DNA/TcMar-Tc1 160-1170  [Aedes aegypti]
MFAKEVVTSLLLAGKSVKQIAETVGCHLATVYRIKRALHDGTSPRKPGSGRPRSARSLRVIRSVKEKLKRNPIRSIRKLA
KDANISKTTMQRLVKDDLDSKSRARVKRHLVTDRIKALRLERSKILLSVFKKKRPIVVFSDEKLFTVDPVCNSRTNRFIS
PQKMEDVPENVKFAFTTKHPAGVMVFGAVASNGLKMPPVFIKAGLKVNTEVYMNILKENVLPWMKDNFGEHEHVVFQQDG
APCHTSKRTQMWLKENMEFWPKDVWPPSSPDLNPLDYSIWAYVQAKACERSHPSVEALKASITKAWNSMSASYIQKVCSR
FRSRLEKVIEQNGGHIE
>Impala_FO_tp#DNA/TcMar-Tc1 gi|10764493|gb|AAB33090.2| transposase closest to Mariner-5_AN [Fusarium oxysporum f. sp. melonis]
MPRGKELTPSLRSRICELKKQGYSYSQIHKHFPYIPLGTIKTTCRREAQRGAENTTLPRSGAPRKLTEEQRDQIYDTVIT
DPHVTTRDLLDSVDNVIKKRSLRYLLREMNKRKWIQKKRVALTPLQARKRLDWAIRYQGIDWRRVKWSDECMVRRGQGMR
PIWTFLSPREALRVQDVQEARRLGAVRQMFWAAFGHRSRTPLVPLVGNVNAIGIYELYSFILPWFLQSGDIFMHDNASVH
TARIVKALLEELGVDLMTWPPYSPDLNPIENLWALMKAEIYRLHPELTHTEDTVATQHALVLAAMEAWDNIEDRVLKNLC
ETMPNRVTAVITAEGWYTKY
>Mariner1_AG_tp#DNA/TcMar-Tc1 141-821 Fragment (C term truncated) [Anopheles gambiae]
MPKKSTLWKRITCIMMIRAGRDNRDIMQCVQCSLNTVKAIRSELGENSDDDEAVAARKPHSQRRDCVRTDAFLADLQARV
MENPGIGIRPLAREMGVADEYISMLDTVVKPWITRVANGRPYVFQQDSAPYHTASKTIKWLAANFNDFTAPNVWPPSSPD
LNPMDYFVWGAVERDTNRTSSNTKAELMAKIRSVFAALPRETVARACSRFRRRVEAVIEAEGGYFE
>Mariner34_CB_tp#DNA/TcMar-Tc1 170-1166 wised with Mariner13_CB  [Caenorhabditis briggsae]
HTTLLVXAREKGVRTLEIAKKLGIRKSVVNQKLVRFRELGTFNNIRKSGHLMFGTAPEVVKAVREKISRNHERIMKKMTX
SLECSXKSMRNIFRKQLHMIPYRTQKGAFLTDRNKGLKLKKSKNLLRGTRFGTHLKTVFYRXKLFTVQANKTDQNNXIGA
IDYYSACRRXKTQNKTSHPVTVTVFGEICSNGKXFVDCGAKINXKSYIERMLKSEVLPQSQSRLXERQLXFYQYGVPAHT
AKLTRQWFQANFPDFLTKDRWSASSPVLNPTNFXVLGILDPXVSTKNYPNLEALNRSLTAAWDNLDVNYPRAVVDSFLKR
LRAVIGANGGRLK
>Mariner1_PPa#DNA/TcMar-Tc1 341-1357  [Physcomitrella patens]
MPRLCESLKHQALVQLRSGVSTRKVADSLGMSQSSVAHLRREISGEIEKQRGGRPKVLGEQEKRLGVHLVTAGCLKTASA
AAKQLREKTGKHFSDITLRRGLREAGLGACVQQKKPLLAKRHVLARLSFAHKYKNWTVDDWRRVIFSDETKINLINSDGR
SWCWLREGERPGPKHVSQTVKHGGGSIMIWGCMTAFGPGAWYQIEGRMEQHLYKKILETYLQSTTQNYNLDPTKVVFQHD
NDPKHTAKSVQFWLSSQPFQLLRWPAQSPDLNPMEHFWALLKQRLSQVTPRPRGVQELWENVCSIYPSFDAKDCEKLYKS
MPRRISAVLEAKGYWTKY
>Mariner-3_TMe#DNA/TcMar-Tc1 81-1163 [Tuber melanosporum]
MAPPHSQTLREDQKREIYALYKHTDMGYGKISKLMNLSKSTVSTVVKNAKSRDGNTHDAPRSGRPTKITDAKRQVILDII
DAEPYLALRDITQKANIGLGKDTVSKISKEAGFKLRIPRKKPFWRKGQKEKRKEFARVRRNWTRAWKWVVFVDEATIEYD
PNPVGRKVRLRPGEELEEKNLKPSFKSGRTNIGVYAAMMHGGRTELILVRKRTEEERTSKRDRLGLNSHQYATEIHQPYL
IPFIEAIDRAPQTIYMAADNASWHNGAENKKLQEDCGYQRLAWPPNSPDLNPIENAWAILKRALRKRFSKVERRPHSAAE
LFQAAKEEWDLIPQGTFDGWIQRMPERLQAVLDADGSHTKW
>Mariner-14_DAn_tp#DNA/TcMar-Tc1 209-1305 via genewise with Tc1_Ele13, 1 intron (1014:1081) [Drosophila ananassae]
MPKQKQFTDRDKEKIILLAEQNVSNRQIAAETHFNESSVRRFLKKYRxIAEVKRKKGTGEKKCTTPREDRFIMRTSLQDR
FKTAVQIRSEVHEQFSKDISERTVQRRLNSTGMLAGSPAKQPLLNPRMKKNRLNWAKDKENWTASDWSRVLFSDESKFNL
IGSDGILKVRRKRGERYSANCCIATVKHSPYVMVWGCISKYKTESILMVQGMVNAEKYKEIILSGVVPSIESISEEEEKP
IFQDDSAPCYRARSLSYSVSDCYQNNLFNWPGNSPDLNPIQNFWAYMGAKIRKQKPKTMEELKQIIEKVXIHDITKEYLC
SIYDFMIERVKAVIRAKGGITKY
>Mariner-11_DF_tp#DNA/TcMar-Tc1 308-1359 via tfasty with Mariner-4_DAn_tp, 1 frameshift. [Drosophila ficusphila]
MKIHNNHAKILILVGRGQHCSEEERNLIVQLRKQGKTYQQIQDMVNCFTKMVSNAIYGIQCHLNHDWKSKTRGPKRKTTD
IKDRRIVCFSKANPLASSRDVKVELKLGISDVTIRLRLVNGNLNARSPRKVPLLGKRHIQARLEFAKSHLYWPVTKWRNI
LWTDESKLVLFGGTGSRQYVRRPPNTEYHPNHPLKTVKHGGLKILVWACFSYSGVGRIHMIYGIMDQHVYVDILKNVMLP
YAQWDMPLKWSFQQDNDPKHTSKLAKSWFIQENIDVMSCPAQSPDLNPIENLWGDIKRYVAKKSPTSKSQLWQFVPDAWA
QIPPKRCQDLVDSMPRRCEAVIANKGFTTKY
>Mariner-18_DK_tp#DNA/TcMar-Tc1 340-1370 via tfasty with Mariner-7_DAn_tp, 1 frameshift and 2 stopcodons. [Drosophila kikkawai]
EKNKIIDLLIAGESVRKTADKFGVSHMTVQxSREHCLESIPVNSCGRPKILSDRDTRYEANLVTSNRHITPSKAAVMLNL
NVIAWPIRRSLVxLGLKAKEIKMKPALTKRHISLRHKFAVTHENLTIADWDTVSPRNFRLKNENYSKIFGFSRLYSRTKQ
KLIDLSQMIAPGVGLETPPSNVRQAVKHGGGSIMVWGCVHENGVGPLVLIDGVMRKELYLSILQQNLPVAIEYFGLSVEK
CNFQQDNPPKHSSYWVQNLISTQNFQCIKWSPQSPYMNPIENLWSPAKSQFARYAVPPNGMMELLEKTKDVWYASPPEFV
LGYTQSMPNSIGELKKSKGLWKHH
>NP_497684_tp#DNA/TcMar-Tc1 gi|17556110|ref|NP_497684.1| transposase, Tc1/Tc3 and Integrase, catalytic domain containing protein family member (3E365) [Caenorhabditis elegans]
MPRGSQLSVEEQAKLDVMASLNVSKNEMARQINRSRKCVYNYLNNPLGYGQAKRAPRKTILSSRDEGNIYKIASNSFKSA
NEIRKELKLTASKRTIINTLNKNPSITRQKMMKAPSMTPNHMIKRLDFAKENMGTEWTKIVFSGEKKFNLDGPDGNRYYW
RDLRKDPLIFSKRNFGGGSVMVWAAFSEKKKLPIQFTSHKMNAVDYQKVLDQDLVKFMRHPSKKGWMFQQDNASIHSAAS
TRAFLDSKKIKLLKWPACSPDLNPIENLWASLVRIVYANGKQYPNVAALKLGIEDAWKEISAAEMKNLVNSMSNRVFEVI
AKKGGPTKY
>Mariner-24_DF_tp#DNA/TcMar-Tc1 367-1389 via tfasty with Mariner-1_DK, 2 frameshifts. [Drosophila ficusphila]
MPKGTELNFSQKKIILHLHNEGRSIKYICGMFDRSPSTIRSLISRLKSRNSLENLPRCGRPKALTCREERKILEENKKNP
HLSAPKINSVLTTSLGTNVSTETVRRVLRSQDLHGRCPRKKPLLSAINISKRLSFAKTYLDRNLEYWRQVIFSVETKFNI
FGSDGKGKVWRKPCEELKLKNVKPTVKHGGGSVLVWGCMSAQGVGELAFIDGIMNAEGYLKILKENLHSSATKMGLEGGK
FIFQQDNDPKHTAWKVKKWLLFNTKQIHTPPQSPDVNPIENLWAHLKLKVQEHKISSKNELKEILLKEWSNIPEVRCRKL
LESKPRRLQPIKENNGLHTKY
>Mariner-9_DAn_tp#DNA/TcMar-Tc1 331-1323  [Drosophila ananassae]
MGRGKSLTDFEKGQIKGYIESGLKHNEIAKKIGRSQNVVSNFLRNEADYGKKMIGGKKYATTASERRLILRTASNSHLSA
SKIRDECGVNASLATVKRVIRSAKHLKRLKIKKKPPLNDARKEARLRFARDHMTWNKEWKAVVFSDEKKFNLDGPDGYNY
YFHDMRKEECFLSRHHSCTGGVMVWGAISFYGTCELQFVSSKMNANVYKTVLQKAFPQFSEIFGPIQWTYQQDNAPIHTA
RVTKQWIKDQNVNLLEWPPYSPDINIIENIWGLLSRRVYEGGRQFQDSATLVEAIKKAWATISLSEIEKYYDSLSNRMFG
IIKNRGGHTKY
>Mariner-4_DBp_tp#DNA/TcMar-Tc1 331-1323  [Drosophila bipectinata]
MGRGTVLSEKEKSQIEAYYECGLSLHKIAEKTGRHRKTISSFLRNKENYGKNFKGGNNRVISDVNRRSILRQASNSHDSS
AKIRENSGVKASLSTVQRVIRKATHLKRLKLKKKPPLNCQRKETRLNFSRLHMSWTTEWQYVVFSDEKKFNLEGPDGYNY
YFHDLRKEEHTLDRLHSRKGGVMVWGAISYFGTCELQFLTSRMNAENYKNVLITAFPQMQNLFQNLKWSFQHDSAPIHTA
RSVKSWIVAQNVDVLEWPPYSPDLNIIENVWGWLARKVYESGKQYKTKTELIDGIKHAWSTISLNYLDQLYKSIPNRIFE
VISNKGGSTHY
>Mariner-4_DAn_tp#DNA/TcMar-Tc1 307-1338 Mariner-5_DBp_tp very similar. [Drosophila ananassae]
MAIHYKFEKILILVGRGPHCSKEEREKIVWLRKEGKTYKEIQNILKCSAKMVSNAINHDSKPEKRGAKRKTTIIEDRRIV
RFSKANPFASSRDIKADLSLEISDVTIRRRLLDQNLSARSPRKVPLLGKRHIKARLEFAKSHLNWPVSKWRNILWTDESK
LVLFGGKGSREYVRRAPNTEYHPNHTLKTVKHGGLKILVWACFSYSGVGPIHMIEGIMDQRVYVDILKKVMLPFAEEEIP
LKWTFQQDNDPKHTSKLAKEWFNKEKIDVMPWPAQSPDLNPIENLWGDIKRYVSKKSPTSKPQLWKVVQEAWGQIPLKRC
QDLVDSMPRRCEAVIANKGFTTKY
>Mariner-5_DF_tp#DNA/TcMar-Tc1 366-1358  [Drosophila ficusphila]
MPRGDHLSAEERGIITAMNENGCKISEIAARVSRHRHTIXNFIKNPKKYGEIKRSGRPSSIDXRCKREIERLAVNKQMSC
NEIKRHLHLNDTRRRVHQLLVENKNLKYSSRVPVPKLLPRHLSARLSFAEKYKFWTEEFRKVIFSDEKKFNLDGPDGCQK
YWRDIRQPRQTRHKRNHGGGSLMVWAAFGYAGRSPICFIPTRTNAEIYTQLLDNVLIEFAGNLYGDNWTFQQDNAPIHTT
RTTKEFFSSRKIPLLEWPAISPDLNPIEDLWGILSARVYKNGRQFDTIKQLRDALVVEWDQINDNILKGLVDSMPDRLNK
VIIAKGKHINY
>Mariner-8_DF_tp#DNA/TcMar-Tc1 354-1376  [Drosophila ficusphila]
MTRKELTVEERKIILNLHIKERKSYSEISEIMCRSRSTIQHVIGRFKNEGRVENNQRTGRPPKLNDRDKRTIKHLIDKEP
FQSAVKISDVINTTLHKDVHPETIRRTIKEFGFGSYTPRKKPHVSKQNRLKRLEFAKTYKNHSVEFWRKVIFADESKYNI
FGSDGRFKVWRRPGDAYKPKYTIKTVKHGGGGVMVWGCVGFAGVGGLEFIDGIMDHKKYIDILKRNLNQSADRLGIGSSY
YFYQDNDPKHTALNTRLWLLYNVPHVLNPPPQSPDLNPIEHVWNQLEKNIRGREIRNKSDLKAALKEEWDKMDLSYLESL
VSSMPRRLNEVIKMKGYPTKY
>Mariner-5_DRh_tp#DNA/TcMar-Tc1 346-1363 via tfasty with Tc1-2_DM_tp, 1 frameshift.  [Drosophila rhopaloa]
MGKTAELSLVTRSSMVAKFKAGIAVKDIAKEFDVSRQTVHYQIKKFEKHNDLRNLRRSGAKRKTKPSEDRVLIREFKKNV
FLKPQSAADQFNLTAKTPISERTVRRRLKESDFKTYKAKDVPYISKANKLKRLSFAKEYINKPKEFWRSVLWTDESSFEY
NSSKNTFYVRLPKVQRQKRRPVCQKVSHGGGSVMFWGCVAYNGLGDFVPVTGSMNQHKYLSVLNENAFTSGDRLIGQYIL
QQDNAPCHKAKMITTFLKDVGVTTLDWPPQSPDLNIIENVWSLIKRKRTVSLNKTREEAISEITSLWEEISPEILQSLID
SVPRRLQKVIETKGNYIFY
>CR1-53_HM_pol#LINE/CR1 781-3741   [Hydra magnipapillata]
LYESTQPYQQISPKKVLYXNLNNITKNPNDRHLLNSNKRLIVYYTNSTSLNNKKNDFRALIDIEKPDVFAVTETWYTPLS
DVNIEGYVIYRNDRLNGKKGGGVCIYVNSSIKSYEISNIELKSDLIEQIWTWIEYGQEKVLLGCIYRPPDSSCVTNKNII
NSIIAAKRAQDKKQFTSIIITGDFNYNTLKWKDSVEESHSQQAEDFVACLNDCFFEQCVTEATFQSNENELTNILDLVIV
DDSNRIFGLSHLPPLGLSSKGHHILKWFYKMKDRIDDFSSSTKKFAYRRGNYEKINVYIKSINWADEFQNKCIDKCYDKF
LYHYNQSCKNYIPIVKLKNKASEVWMSNSLRKEIKYKNNYWTTNKKMNWSIAGSKEKYNKMKRNILKQINNSVKNYERNL
VNQVKNEPKLLYSYIRKKQKVKNHIRALNDNIGSTMYDKHSIVDIFNKYFHSVYIKEENINDCNFEVQTNSRFGKIFVDQ
ALVKSYLSKLDINKSSGYDEVNPYVLKVCSESFSIPLSIIYQQSLTNSDIPDLWKMANVSPIFKNGSKLQAINYRPVSLT
SIPCKVLEKIISDNLKNYLESNNLFCKQQHGFLKGKNCITNLLESLDFLTYQLMIGNSIDILYTDFQKAFDRVPHKRLIS
KLCGYGIEKEMLNWIETYLSNRKQRVIIGDTKSDWLEVLSGVPQGSVLGPLLFLLYINDLPSKIKNKCELYADDNKIIAV
VNNQVDSKSLQDDINNLTEWSDKWMINFNIKKCKIMHFGKHNKNFEYFIKDSKLDSTTNEKDIGLLISNTMKWNQHVNMV
VNKANSRLGLLSKSFTYKDKNTMKILYCTFVRPILEYASPIWNPYNKNDIHKLEIVQQRATKLIPELRHLPYEERLKKLQ
LTSLKIRRLRYDLIQYYKIFHNLDKVCWYQQPKTAISISANGPASNIRGHKARVDIELIKRNRPRENFFTNRVAKWWNKL
PEEIISAKSVNIFKDKLDKHMVIMKL
>CR1-53_HM_gag#LINE/CR1 118-780   [Hydra magnipapillata]
MVRKEDFEALVSRVLKLEAELQIKDKEINDLKIVVNDMKNQSKLVSNSNDVSNTWSDVVKGRKKNTSVQLDLLNVVVKES
HDREIRQKNLVVFGFKTSTNKDESVAKEDDKQELQNLFKQINVKVTIQRVFKLNTKTDKPPPVIVVLTNKEERNAVLKTA
KNLRNSPETNNIFINADMTEAERFKMKALREERAKLNEANQDLKYYYGIRNERVVKLLKK
>CR1-62_HM_gag#LINE/CR1 80-769   [Hydra magnipapillata]
MPPKKEEEKKLDDLLERIKQLELKLNFKEERIKNLEERIIKLEEENTSNKNNPCIIDDKAWNVVASKNSVKTPLQIDIIN
TVAIETAERARRENNVIVFGLNHSAKSDLNERKEDDKIEVLKVIKDINLESVQIKRITRLRSRDMSQKSPVILELDNVHA
RNQVLKAAFRNRDKIPNIYFNTDMTEAERILTKQLRSEVKILNGNSDMNNSSFYYGIRSNKVVKLTKKT
>CR1-71_HM_pol#LINE/CR1 959-3985   [Hydra magnipapillata]
MDVKSILSSNGKMHKQPELLKHNESNRLTANTYLNALNTKIKSAKSNPKNKLLKCFYTNATSLNPTKMNELSALCDINMP
DLIFISETWFTETSATQLNNYSLVKKNRIGHGGGVAIYIKRDLVAHEVSDCHLRETLNNSNSEQIWCEIKIVNEMILIGC
VYRPPLSHIDDINKTIISAKQAVDRKAYSCMLLAGDFNFPDIKWHNDERIELLSGQNSAASVFLVTLANHNLEQLVDFST
FEASNGNAKNVLDLIITDSSTRVINLSSSMPLGDLSQGHRILSWDYVVLSKNRTTFSNKKYDFNKGDYKNFGKKIMETNW
QQLFENKNTNECYELFCNKYDKLSKQFIPLKKVHSTRNAPWMNKEVLAMIKKKQQLGNYLSMTNWGSTTLICEYKKLRSQ
VQKACTHRVRVFEAQLASDKNNPKRMYAYAKAQQNVHVSIGAISDAKGETLTEAIHIANRLNEHFKSVFVDDSINDQLPV
FERRHNQEDLGDVIISFEATLAYLNGLNPNKSIGVDNISPKVLKECAAQMTYPLTLIYNKALSEGSTPLAWKQSHVTPLF
KKGSRLDAANYRPVSITSVPCKVMEKIIKEQITKYLEKTSCISNNQHGFMSKKGCTSNLLESVDYITKALSKRNFVDIAF
LDFAKAFDKVSHRRLIHKLKAYGINGNVGKWIESFLTSRKQRTVLGNHSSDWTDVLSGVPQGSVLGPTLFIIYINDLTDN
LKSVHKIYADDTKLLQEIRPEFHDADCLILQNDLNIISEWSKEWLMELNVAKCKVMHLGHGNINHEYVMNDGNTSLIIAA
TDIERDLGIFLSNDLKWNQHIQVATRRANMILGLLKKTFRSRDIKLWGKLYTTYVRPHLEFAVPVWCPYLKGDIKEIEKI
QHKATKIPHDITSLPYAERCRRLNFTSLETRRRRGDLIQQFKLENGFEIINWHNPPLRRSPSNVLTRDFTYNNARHNFFT
NRIVNDWNYLPLSCKKAPSINAFKSRIDKYFFPTAANSASFTEDELHV
>CR1-62_HM_pol#LINE/CR1 770-3796   [Hydra magnipapillata]
QFEYKVANKISNILMFKRTVTGIQDFKIKINDNAQKPVISTGYNSNSLKCLYTNATSFEKNKLNEVIAEIEISSPDIIFI
TETWWNDTSATIIPGYNLYRRDRMNSRGGGVCIYVNDLIDSFEVNNEPYNNKNIEQIWCTIKMSNECILCGCIYRPGSDD
LVNFQNVINSIKESYNYFSKTKIYTEVLICGDFNFPSLNSIWNSXYESVCIGEKERQFLECIEECYLTQHVKKPTFQLND
TKLTNILDLVFTASPFRISSLVHMDPLGKTKRGHHVLNFNFNYQLHNRKNESITTKRVYMKGNYHEFSKYLNKFNWSHEF
TGLNVDQCYESFIRTIEYGCKDFIPSFNQKTTESKRSLWMNKELKHEIRLKRNLWYRYKASHFKNLDLKEEYKLKNKLVK
KLVKITIQKYENKIATESKKNPKQVYAYINSKLKAKDHIRAISIENNEISTDSQVIANQLNRFFNSVFINESLTNMPTCE
NITEKICPTPLFNEKDIKKRLLNLNVHKSPGIDRIHPMFLSKCADSLARPLCMIFNQSFLTGTLPTSWLKANITPIFKNG
DRLNAGNYRPISLTSVVCKVMESIVKDTIMNHLNKNKLLIPEQHGFIKSKNCVTNLLETLDIITEAINCGKCVDVAFLDF
SKAFDSVPHSRLLLKLKSFGIVGKLLQWCKAFLANRKQRVVLGLFESEWETVRSGVPQGSVLGPLLFIIYINDLTKKLNN
KAKLYADDLKIIAVLEKNKINNSLQFDLDILFNWTKRWLISFNKDKCKIMHFGRDNPKIKYNLKYNATETEIIQHGLIVT
SLERDLGVYISDNLKWEDHIEKMVSKANQKLGMLKHAILYPDETSTKLLYMSLVRPHLEYAFQVWNPYFIKDINLIEKIQ
QKATKFGYKKKKDSYEQRLEKMDLQNLSNRREKGDLIQMYKFMNKIDTINWHREPEVLGRLTRGHNQRLRRQYVQNFLPR
HHFFTNRIVENWNRLDSEVVNANSVIDFKNKLKKFSEKQLLKSNIYSC
>CR1-50_BF_pol#LINE/CR1 3-1472 fragment [Branchiostoma floridae]
DFFASVFTEEDLSNIPTINNLHDTQLLEGLEITEEVVLKKLAELNPAKSAGSDNLHPRFLKELAHDLATPLTILFKKSIA
SSELPEGWKQAHVTPIHKKGSKSSPGNYRPVSLTSVVGKMLESIIRDKVVEHMSSHNYFTDAQHGFVPGRSCMTQLLVTM
EQWTKLLQAGDPVDVIYLDFRKAFDTVPHTRLLQKLERYGVVGDLPEAISSEVKIFADDSKIFRPVKHKRDQEALQQDLV
AVDQWSQHWQLRFNVSKCKVLHLGRTNQKITYTLGGQNIEETVEEKDLGVSIDNNLAFHMHTAKAANKGNMMLGLINRAF
YNIDEQTIPILFKTMVRPHLEYGNIIWGPHFSLDKQRLERVQRRATKMVPALKDIPYKDRLKKLRLPSLEYRRRRGDMIQ
VFKIMAGKERLQSDLFFVEAKGSSTRGHSYKLKIPLAKTRIRGHVFSSRVVKDWNSLPERIVMSESVNQFKSNLDRHWEH
LWYVHEGCV
>CR1-39_HM_gag#LINE/CR1 156-1040   [Hydra magnipapillata]
MATAAMLPDLLDLDNFGELMTKLCAKAEIPLPDPNQKAAVLKQEHFAVAIKSMFKAFKAVFDKQEKQIIDLSERIKAIET
KKPDNVVIPLFSNIVKSRKLNAQETNCLMAVSKFQSEKDHKANNIVLYGLKESIKSEEEHKKNDDYDLVCNLLSELQLPP
NNNVSISRTYRIRPKQHHHHAQKKENLTNMDEEDETIETSVSTLKPAPLIVEIVNGNLIRKEILKLAKNLAKSKDFNNVF
IQPDLTSAERSLRKELLTKRNNLNKEIPRENNRFTGTHYFGIRGTEVKKIKIVQ
>CR1-27_BF_pol#LINE/CR1 236-3544  [Branchiostoma floridae]
MASSSIRRYSMDFLRSLSRVVPRIDPLTKESIRLNGLFKRSRPRGTKAGKHILREISTVLGHRPSSFQQSDTSFICKSTR
HRYLSTVKTIRHDDPSLAAVSDNNRTKPFPMPKILLTNPRSLVNKLLKVIYLNARSVKAVNPHRNKLVQLQNLMHLNCPD
ILAITETWLNDDVRDQEVIPPGFVTYRKDRHHVHAGRAGGGVLLAVRSDVCSMRRSDLEPKDEILVCEVQPPGLGKLATV
LCYRPPSGDLSTFTVNLSSVLEKVQSEYRMCCVLWDFNLPRVDWTSCAVTDKGKESDFCDVINDHFLLQHNTIPSNSSNN
MLDLVFSNIPERVSDISELPSEFDTDHTILEFGIHCKLQSKRGLSRKVYNYSRADWDGLRSHLASRQLAEAVQQCQDIDS
AWEFLSSMIRSAVDQFVPWRRVKDSTTPPWIDGEVRDIQNRKQTAWRRAKRTDSPAHWAKYRVLRNKLKNVLSRKHVGYL
DSLSSTLQDAPKRFWTFVRAKSKSRTLPSVVYLEDSVAKSAGDKASLFNKYFFSTFSQVDQNVSAPTIDIKVIDSLCSLQ
FNVDSVRDVLSNLDTSKAVGPDSISPHVLKNCAQSIALPLTLLFNQSVSSGVVPSNWKEANVSPVFKKGDKQVVSNYRPV
SLLSIVSKVMERCIYDIVFPILHDSIHGLQHGFIKGRSTTTQLLEVYHNVGSILDRGGQVDMLFLDFAKAFDSVPHSRLL
HKLQMYGFNGKLLSWFNSYLTDRKQRVVVEGSHSEWLPVTSGVPQGSILGPMLFLLYINDLPSTAKNSIVALFADDSKCY
REIRNLDDCHKLQADISSMYDWSLRWGMSFHPSKCKVLRLTRSKSPITFAYYMSDIALSTVSSMNDLGVLAQSDLLWNSH
IVNIVKKANSMIGFIIRTVGFDSSLEVRKALYVSLVRSVLEYCCPVWSPLSRNHMYLLEGVQRRATKFILRANDNVNAGE
LDYRDRLLCLNMLPLSYRREIADIMLFVKSLANMNDLDLSNYVSFSARPTRSSRSFMLMPCRCKTSTFAMSYVPRLVTEW
NKLDVTVRSIGAVSSHQSDLLSFKQLLVKSTVDRFRSHFVSDNLCTWSTACKCASCQDLRAR
>CR1-42_BF_pol#LINE/CR1 1-1662 fragment [Branchiostoma floridae]
GETPLPDLIDTSSVPSISSVTFSVSTIEAILKNLEVTKATGPDDLPAMVLNKCAPQLAPSLKMLFELCLNTGKIPSMWKK
ANVIPVFKKGDKSSVSNYRPISLLCITSKVFERCIFNSVFPLVSNSLYPLQHGFVRGKSTATQLLEVYDEIGQVLDVSGQ
VDVIFLDFCKAFDTVSHVLLVHKLKLFGINGQLLSVISNYLKNRHQRTIVEGHQSKYLPVLSGVPQGSILGPFLFLLFIN
DLPDHVQTGRMAMFADDAKCFKRIDSIFDCIRFQADLDSLTNWSKTWKMKFHPSKCSVISVTRKPLPVTYCYHIDGTTLS
RTATYEDLGLQVCQNLSWNIHVHRKVSKCNSLLGMIKRSVGYNAPLIVKLNLFRSLVIPHLDYCSQVWSPHTRFLLRKVE
GVQRRATKYICNNYDLLYRDRLVTTKLLPLCYRRELFDILFLFKCFRGLYSIDIHRFVQVSLPHRQLRSTDPFQLVVRVC
KTETFTFSYFSRIVLIWNTLPATIRQHMYSNLTIPSVRKLLVNHYTSRTDHTFSADNFCTWTSICRCSHCLLS
>CR1-49_HM_gag#LINE/CR1 767-1447   [Hydra magnipapillata]
MPPKADNSELNNKYETLLKQVEALSKTVVEQTSTIIALTKRIQQLEEKPIASSTTTETWNFVVGKKSTKTPAQLDMLNCV
ANENKDRMKRDKNLIVFGIPASTKKEPNEKQVDDENKIKELLTNVKINSDNIIKCFRLRSKDPNKPPPIIVETTDTVTRN
NIVKAARRKFEGIYVNPDLTEAQRRQDRQLRDELKKKNEPLNLKNNWAKTSHYYVIRNNAVVKVDK
>CR1-44_HM_gag#LINE/CR1 144-848   [Hydra magnipapillata]
MVNVRKGEFDTFKEETNKKILALEDLVKKLLSKNLDLEKQLKFLEDNQAQIISKNNQINSKPLFSSLFHNKSLEPEETRI
LTAISAENKEKSRREYNLILHGLDELNKSTEENIQHENEQIKKIFNYLKVDESFIKRHHRLKSKTDKPGIVIVELNNKEK
VADILKSASNLKYNVEYKNKVYINQDLTFAQRESRKLLLKERDRLNNADNNQPFRYIVKNESIVKVKKSEKTKN
>CR1-75_HM_gag#LINE/CR1 2-712   [Hydra magnipapillata]
VGFLEAENKNQRKEIDFLKNNNNANITYQNNIHNADVWAGFVSKEKDLAAKEKNAALFAKISKENNEKNRILNNMIISGL
TESVNLDDDNKAIDEILTILKVSSDDVKVKKRLKKKNASPPTPISCEIENQFNSVSSRPPLVLIEFKNYEKRQSALANAR
ELKNKFGLTKVYVRPDQTENERIALSKLHVECRIRNNALPNSFVDLQGRQLNWGTRDGKKGFWSVRSGTIRWIERKE
>CR1-X_pol#LINE/CR1 1084-4084 ((merged CR1-X2 3'end with CR1-X as 3' end of latter is weak) via tfasty with CR1-Y_pol, 2 frameshifts and 2 stopcodons. [Gallus]
WDAPFSEGEKDFCAGVSRADRxSFKLDLKGERDKTRLASDKLWDGTPKFEGLRASEILQSAPRGAGYNEAHLKCFYTNAR
SMRNKQEELEALAQSQSYNIIGISETWWEESCDWCVTMDGSGLFXRDRQGRXGGGVALCVREGLGCTELAVGDDTVESLW
VRIKGQANKADVVVGVYYRPPSQDDDTDELFFKELRDTSRSAALVLMGDFNLPDVNWEYHTADTNRSRRFLKHLDDNFLV
QVLREPTRKGALLDLLLVNREGLVGEVAIGGRLGHSDHEVVEFKIFGDRRKTATKTSTLDMGRADFRLLRELVSKVPWET
AFEGIGVHQCWSLFKYHLLRAQEQAIPKCRKSSRRGRRPAWLSRDLLLELRRKKKVYGHWKRGRATWEDYRDAVRHCREK
IRAAKAQLELKLASTVGDNKKGFLKYVNSKRRTRDNIGPLLDEDGHLTNRDADKAETFNAFFASVFNTDDGLWDPRSPEL
EDRDCGNDKLPANPELVRDLLLXLDAYKSMGPDGIHPRVLKELADVIARPLSIIFQRSWESGEVPVDWKLANIVPVFKKG
KKEDPGNYRPVSLTSVPGKIMEKIILGVTEKHLKDNAVIGHSQHGFTRGKSCLTNLISFYDKVTHLVDQGKPVDVIFLDF
SKAFDTVSHSILLDKMSSIQLDKNIMRWVNNWLMGRAQRVIVNGVTSGWRPVTSGVPQGSILGPVLFNVFINDLDTGLEG
ILSKFADDTKLGGAVDSLEGREALQRDLDKLEGWAITNRMKFNKSKCRILHLGRGNPGYMYRLGDERLESSPAERDLGVL
ADGKLNVSQQCALAAQRANRTLGCTRPSTASRAREGIVPLCSALVRPHLEHCVQFWAPQYKKDIKLLESVQRRATKMVKG
LEGKTYEERLRSLGLFSPEQRSxGEASWRLQLLTGSGGAALSSALCDSDRTRGNGMELRQGRVRLGVRKRFFTRGWWAWN
RLPRAVVTAPSLPEFKKHLDNALRHRVWNFGWSCVEPGVGLDDPCGPFQLGIFYDSMIL
>CR1-Je_Tgu_gag#LINE/CR1 64-1164  [Taeniopygia guttata]
MAPTRQKATASLSSAPTTADAAAQTELRWEHAATQVPGCRVCPALTPAPASSSEHTCGRCAQVEELLRLVTELREEVSRL
RSIRESERDCWNRTLPSLGQARQADRTHDTEDSLSSLRLAEHSDLRDGGQWRQVPARRSRRVSSVTAPPPQVPWRNRCEA
LQVEPNNNEDDGSSSXEVSLRLSRPAPCVKTASIKKKRRVVVIGDSLLKGTEGPICRPDPLLREVCCLPGAWVKDVKRKL
PTLVRPSDYYPLLIFQVGSDEVATRSPRAIKRDFRALGRLVKGSGAQVVFSSILPVAGNDEGRNRKSQQINTWLRAWCHR
QNFWGFDHGSVYTTPGLLATDGVHLSQRGKRIFAQELAGLIERALN
>CR1-X_Tgu_gag#LINE/CR1 297-1439  [Taeniopygia guttata]
MVLTRRRAXSPVAAGVTEPAVSEASSQPDLLMADAALQVTGCQECLMPLREAGADKQFFCRRCAVVEELCRQVKELQEEV
NRLRSIRANEQEIDRLFSETLQSQDSRESRTSIVVEKQVDSEPCRVISQRTVSQGSVEDEGWKQVTARTRRKVPPPQNLT
SRTGTFYSRCEALEPEGQTTDEVGEGPSGIVGPPKTTPPVPRITTSSVXRKRRVVVIGDSLLRGTEGPICRPDPTHREVC
CLPGARIRDITGKLSSLVRPSDYYPLLVVQTGSDEITKRSPRAIKRDFRALGRLVEGSGAQVVISSILPVTRNNIDRNRQ
IHQVNAWLRGWCQRKNFGFVDHGMIYSTPGLLTPDGMHLSQRGKRALAQELAGLVDRALN
>CR1_Ele6_gag#LINE/CR1 266-1654  [Aedes aegypti]
MTSVICSACTQSIGSESDRVYCFGGCDQILHTRCSELSSSAMAAARGNVALKYFCFGCRKQQTCINEINKKCTDLLNRVN
VISDLVSKHDTAFENLDKQLCEKVEAMLLPRLLSAIHATKSSASDCNTCVVASNDSYAAVVSALPTVNVPNTANTNKQIA
MNNSNCTPVISDLGGGLLRSGKRRNLDPSRKERATMSTESATPCTPRKSATVARIEQTVLLRPKRKQTSEITQKDVHRKL
DPAEFLVKSAFFKEDGEAVIRCETSENALKFVNAATKMLSEKYDISVQKPLKPRIKIFGISEDFTAEEILTKLRKQNNLP
ESSDVKIVKLQKAKSRKSNPVDAVLEVDAKSFDYLIKLERVNIGWNRCRAMEMVNVLRCYNCSAYGHKASSCSNSVCCPR
CSGDHNADECEAEYEKCANCERLNKDRKSKNDELLDTNHSAWGTDCPIYQRRYKLAKERIDYS
>CR1-Y_pol#LINE/CR1 1380-4427 [Gallus]
WTPTEQVGHKCSGEQALWIDYQGFKLGSKGEGRGVRCDREGLRDVVTVGDCREKPLSCPIGSCEGSSEKVTLPIPRPKSS
CVPLGVTAPAASLKCLYTNARSMGNKQDELEICVRSQGHDLIAVTETWWDSSHDWNAVMEGYVLFRKDRLGKRGGGVALY
VREQLECIELHLGEGEERVESLWVRIKGRASMGDTVVGVYYRPPDQEXEVDEAFYKQLEVASQSRALVLMGDFNHPDICW
VSNTARHTRSRRFLQCVEDNFLTQVVEEPTRRGVLLDLVLTNRDGLVRDVKAGGSLGCSDHEMVEFKILXGRSKAKSRIA
TLDFXRANFDLFXDLLGGIPWARVLEGKGARESWXAFKQHFFQAQDRCIPKSRKSGKGGRRPAWMSKELMDKIKGKKKVY
EMWKKGLSXWEEYRSVVRACRDATRKAKAHLELXLAKEIKDNKKGFFKYVNSKRKTRENVGPLLNEGGVLVTGDAEKAEM
LNAFFASVFTXKTPPRXSRTLEVRERVWEMESFPLVEEGXVRERLGGINVHKSMGPDGMHPRVLRELAEVIAEPLSIIFX
RSWRTGEVPEDWRIANVTPVFKKGKKEDPGNYRPVSLTSVPGKVMEQLVLDAISKQLEEKKVIRSSQHGFTKGKSCSTNL
VAFYDGITSWVDGGRAVDVVYLDFSKAFDTVSHDILIMKLRKCGIDEWTVRWVENWLTGRAQRVVIGGAESGWRPVTSGV
PQGSVLGPVLFNIFIDDLDEGIVSTLSKYADDTKLGGVADTPEGCAAIQQDLDRLESWAAXNQMRFNKSKCRVLHLGRNN
RKYQYRLGHDLLERSSAEKDLGVLVDDRLAMSQQCALVAKKANGILGCIKRSVASRSREVILPLYSALVRPHLEYCIQFW
APRYKKDRDLLERVQRRATKMIKGLEHLPYEERLSDLGLFSLEKRRLRGDLINVYKYLKCGSQRDMANLFSAVCGDRTRG
NGHKLEHRKFRTNMRRNFFTVRVTEHWNRLPREVVDSPSLEIFKTRLDAYLCSLL
>CR1-H_pol#LINE/CR1 1676-4699 [Gallus]
SFKLGTKGGGGVTGVTRTEPVCNVPVLVGEGCASKIPQSCVLVKEEDDSPFCRKNTRVGVRLVAVETPEYGHEGIRATAT
QKEAQLRCLYTNARSMGNKQEELEAIVRSESYDIVAITETWWNDSHSWSAVMDGYRLFKRDRQGRKGGGVALYVKKECEC
MEINDGDDRVESLWVRIKAKANKTDIIVGVCYRPPNQDEEVDKTLYRQLGEVSRSLPLVLVGDFNFPDICWIYNTADREQ
SRRFLECVGDNFLTQLVREPTRGSKILDLLFVNREGLVGDVKVGGRLGHSDHEMLDFSILVEPRRGVSRTATLDFRRADF
NLFRTMVERVPWEVVLESVGAQEGWEYFKEVILKVQELTIPKSRKTSRRARRPDWLNRDLWLELKNKRKVYGLWKSGQAT
YDDYRYVVKLCREKIRKAKAQLELNLATKVKDNNKYFYKYINSKRRARENLHPLLDAEGNLVTKDQDKAEVLNAFFASVF
NSKTCYSLGTQPPALVDRDGEQNRPCMIHDEMVLDLLRKLDAHKSMGPDGLHPRVLRELADVVAKPLSIILRQSWLTGDV
PADWRLANVTPIFKKGRKDDPGSYRPISLTSVPGKVMERIISGAIMDQLKVNQGIRPSQHGFTNGRSCLTNLISFYDKVT
RLVDEGKAVDVVYLDFSKAFDTVPHNILVEKLAAHGLDGRTLRWVKHWLDGRAQRVVVNGVKSSWRPVTSGVPQGSVLGP
LLFNIFINDLDEGIECTLSKFADDTKLGGSVDLPEGRRALQRDLDRLDRWAKVNCMSFNRAKCRVLHFGHNNPRQPYRLG
EEWLESCLMERDLGVLMDSRLNMSQQCAQVAKKANGILACIRNGVVSRTREVILPLYSALVRPHLEYCVQFWAPQYRKDI
EVLEQVQRRATRLVKGLENMPYEERLKELGLFSLGKRRLRGDLIALFQYLKGAYSESGVGLFSLVTGDRTRGNGLKLRQG
KFRLDIRKXFFTERVVKHWNRLPREVVESPSLDVFKNRLDVVLRDMI
>CR1-76_HM_pol#LINE/CR1 742-3774 via estwise with CR1-64_HM_pol, 2 frameshifts.  [Hydra magnipapillata]
QLPKNYKINKIDYQKSTDRNKKTINKVFKKINYESKSIESINVLSENTKKPTINNNDVTENFLSCWYTNATSLNCKYNEF
IAEIVTSHPQILFISETWFNEMSLSNVPGYNIFRKDRIGKRGGGVCIYVKENIKSVTVSDKMLNDDDLEQVWTSLHIGNE
KILCGCIYRPGTIDYELNLKIKINYKSIKRSYNLLIKSKYSGLLICGDFNYFSIKWNKENIGELINNSDISAKEFLKSSx
KCLNDCFITQNVIKPTFQINEFKSTNVLDLILTESNKRIIDLNHFDNLGALSHGHQILKFLYSFRNNLKKTETVKKNITL
YKHGNYNGFSDMLNSYDWHLEFKNLDANVSYNKFVDIYNKGLIYFIPTITKGVVKTKAPWMNSNLKKLIRKKRNLWRKCL
HNRFLNKGNVLEYKSIRNKVKKEIKNQIKLYETTIALNVKKNPKAIYAYINKKSKVKEGINALNVNGKLETNYLSIAHSL
NNYFSSVFTNEISDNIPFFKNRTNIICEDPTFSPDTVSIILKSLNPNKCTGVDGVHPFPLKCCADAFSLPLSLIFNKSYD
TGIIPSMWLNANLTPLFKSGDKSEPSSYRPVSLTSVISKVMERILKATFMSHLENNNLLTKEQHGFSKKKNCCTNLIESM
DLITQAMEDNLPVDIIFLDMKKAFDSVPHNRLCLKLKSYGFNYKAVRWCKNFVCNRVQRVVCNGEFSNWSPVTSGVPQGS
VLGPFMFIVYINDLPNELSTNCKMYADDIKLINIIRSSSDIEKTQTDLNKLMTWSQLWLLKFNVSKCKRMHIGSKNTKHI
YTMYDSVLNRVELPETKIEKDLGVMISNNLKWSSQVNYVSGKANKMLGIIKHSFKNLDINASKLLYTSLVRPYLDYANSV
WYPYLEQDKKKIESIQRKATRIKCLQGKNYESRLTYFKLTTLEKRRKRNDLIQLYKIVKKIDNLTLEYPPDLIASNTRGH
NMRFHRQLTKNPKRYYFLTNRVINSWNNLDQNIVDSKTLKQFKSKLDLFLT
>CR1-76_HM_gag#LINE/CR1 64-741   [Hydra magnipapillata]
MVLKADFEALEKRVSALEKAIKAKDDQLTEKXQQIEELIKKLEDKNCNDVRGNEELWTDVVKGKQKRKSINQLNLINAVA
KESNEQKMREKNVIIFGLAASTNKNKDNAFDEDKKNVISIFNKIDTNVNIEHIIKLKTRNENQPPFIVVLKDKHERNKVL
KSSKVLKDDDSFSKVFINPDLTEAERHKAKLLREECHRMNTERKQRNENNYYFSIRYDRVVKITV
>CR1-81_HM_gag#LINE/CR1 138-815   [Hydra magnipapillata]
MVNVQSTEFNVFKAEQEKLIKALNRTIEELKNLNLLLSERVKMLENAESVKSSPLLSWASVVSGKTPVKKTVEQLNLINV
VTAEKKEREKRENNVIIFGINPSKAIDKSSAIKEDKNSIQEVLNSINLKVEVKQIIKLKSKIDNQPPFVIVLNNKTDRNS
ILKAAKLLKNSSEFKNVYINPDLTEAERYKAKLLRDECKKNNLENSESLLYYYGIRNDRVVKIAK
>CR1-D_gag#LINE/CR1 423-1539 via tfasty with CR1-B_gag, 2 frameshifts.  [Gallus]
MVSTRRRXRVSAPVRKDAATLTEXGGNHAAVQTSGCVECMSLSLASWGSSQNSCVRCEQVDDLLXLVARLQDEIYRLKSV
MGDKKKEQWKPQFTHAQTGYFKGKKLQNPRQPVSHQVEEKNCKAGGKNTKERSGWRQVCARSCKRKPSLPAPPPQVPLYN
RYEALDVEGPSVGDNSPLXLDXLTKPNQEKPSPNIKTTSLKKKRRVLVVGDSSLQGTERPICRADPLLREVCCLPGARVR
DVTRKLPSLVRPTDHNPLLLFHIGRDEAATCGSRAIKRDFRALGRRLKELNAQIIFSSLPPVLGKDTETNQRILSLNTWL
CGWCRRQNFGFFFDNQMAYMAPGLWAPDGVRLSQRGRRVLGEKLAGLIGRALN
>CR1-C3_pol#LINE/CR1 1394-4432 [Gallus]
QTRNVDVGWDATDQEGQEYTRQQAGWAHHQGFKLELLGEGGVLLSDREEPGNTVTLGSSRGKPQICPGGLWEGSSRKVMR
PKAQLKCLYTNARSVGNKQEELETVVHLENYDLIAITETWWDDSHNWNTTIEGYKLFRRDRQGRRGGGVALYVKKWIDCE
ELPLRNSQEQVESLWVKIRDGTNKGQLVVGVYYRPPDQGEPVDEAFLLQLQEVSCSQALILMGDFNHPDICWENNTVSCK
RSRRLLESIDDNFLVQVLDRPTRGEALLDLVLTNAEEIVKDIKIGGSLGCSDHALVEFVISRNVGLAKSGVRTLNFRRAN
FRLFKELLDEISWEAVLRDKGVEQSWLLFKDAFLRAQELSIPQNKKAGRGGRKPAWLGKDLLVKLREKKGXYRQWKQGRV
TWEEYRDAVRTCRDGIRKAKAQMELNLARDVKNNKKGFYRYXGQKRQAKESVPPLINEKGELATTDMEKAEVLNEFFASV
FTGSQDSHISHIPEPHIPEPLGGNWGSKLPPTVRAEQVRDRLMRLNVYKSMGPDDMHPRVLRELADVVAEPLSIIFEKSW
LSGEVPGDWKKGNITPIYKKGRKEDPGNYRPVSLTSVPGKIMEQILLEDMLRHMRDEQVIRDSQHGFTKGRSCLTNLVAF
YDGVTASVDKGKATDVIYLDFCKAFDMVPHHILISKLERYGFEGWTIRWIRNWLEGRSQRVVVNGSMSRWRPVTSGVPQG
SVLGPVLFNIFISDIDDGIECTLSKFADDTKLSGAVDTAEGRDAIQRDLDKLERWAXVNLMRFNKAKCKVLHLGRGNPRY
VYRLGEELLESSPAEKDLGVLVDEKLNMSQQCALAAQKANGILGCIRRGVASRAREVIVPLYSALVRPHLEYCVQVWGPQ
HRKDVELLEXVQRRATKMIXGLEHLSYEDRLKELGLFSLEKRRLRGDLIAAFQYLKGXYKQEGNQLFTRVDSDRTRGNGF
KLKEGRFRLDVRGKFFTERVVRCWNRLPREAVDAPSLEVFKARLDGALGNLI
>CR1-4_Gav_gag#LINE/CR1 54-1055[Crocodylidae]
MEPMAPASTQTEPLALGCGGCLARMQAPGIRSKDTSPCGVCSTLESLECQIGELQAAVQRLHAIRDGEEEIDAYRQALRL
KNEEGRARMAGRTRVDKRSSREVQPGVAWTKVVSGPKAXCARVTTPLELHNRYEPLAAPAEPAEPPAPALEEGRQPATTP
KKKRRVVVVGDSLLRGTEGAICRPDPLAREVCCLPGARIRDVAERIPKLVRPSDHYPMLLIHVGTNDTARSNPGRVMSDY
RALGAGLRGLGAQVVFSSILPVTGHGHRRERCIEEVNRRLRRWCHREGFGFFDHSPHFRERGSGLLGRDGLHLTPMGKKL
FSARMADLLDRALN
>CR1-4_DWi_pol#LINE/CR1 1271-4117 [Drosophila willistoni]
LTTSFSVGYQNVRGLNTKLTKLFVDSLSFDFDLIVFTETWLKPDVFDATVLPSNFNIFRRDRTDRRGGGVLIAVDSALSS
GLITIPVSSTIEFICVKVSFSRFSIFVTCSYIPPQSEWPTYLLHLDSIKFIVELLSDRDLLIVLGDFNLPTMTWSTVNGS
KTLLPSGCHDFIDGLLELSLAQLNSISNTSGRFLDLIFTSDPSFCEVSRTSPMVLPEDSYHPTLELSIEFPSREPISECD
PTVSTRCFRKTDFVALNNAFLNTDWTNLYTCTDMNSAISLFYTTVDSIFNDCVPLVSPVVTQKSPWFTRGLSKLKNLKSR
YYKKYKVTGLSSDLSRYLVAKSNFIVSNSKCYNNYLQRCKLQFSENPKEFYSFVNSKRNSVSLPSFAVFNNDSASSDQSI
SNLFANFFSTTYISTKYNSSQIYPYPITKSNCILNPIITQSSVAKELMTIKPVYSPGPDGIPACVLRFCAESLCSPLLKL
FELSVTLSEFPTIWKDSFILPLHKCGNKSDVTNYRGISKLSAIPKLFEKIMTSQIQHFCKSIFSPYQHGFVKNRSTTTNL
LQFTSFVIQGFKKQKQTDVIYTDFSKAFDSVNHALLLHKLNLVGFPDALLAWILQYLSNRRQRVLFRSSLSKIICVESGV
PQGSHLGPLLFTIFINDLPTVLLNSRVLMYADDVKIANRIVDSLSCHTLQADLNAFQGWCRTNLLSLNCSKCKVMSFYRG
SPQLTSYFLNNFPLEKINNTSLVVKDLGILIDHKLSFNQHISTTVSRAKSVLGFMKRWSKEFKDPYITKILFTSLVRPIL
EYGSCVWSPQYEFYQNKLESVQKQFLLFALRDLRWDPTVQLPSYSSRLQLINLPSLTNRRTMLGVTFLYKLLNGEIDSSE
LLSQINISVPSRRTRNFTPLILPTCTTNYSLHEPFRILCSDYNRLWHVIGSETSLPGIKTAILSFLARN
>CR1-6_AG_pol#LINE/CR1 1300-4293 [Anopheles genus]
FAALPTPTYNRPHLTVSFTNRRTSVKSAQTPTCYVPAANALRTARSTASVYYQNVRGLRTKVDEFRLSVLESNFDVIVLT
ETWLDPSLPSALLFDDSFRVYRCDRSVDNSTCSRGGGVLIACSQSLTSREHTTVHPSLELVCVVIQLGNSRLFIIAAYLP
PRLAANAATLREIENCIRSLCSTMHPGDGLLLLGDFNQPLVSWSAAQHDPDLPFLHYEPRTRSALSALFMDEMHHSGLFQ
INGHLNTSGRVLDLVFANNAVASVCLPLELCLTPLLAIDTYHPALELAIPLPREESAVPALTSRLDYARTDFNRLLPMIA
SFANVFDCSHYATLDLAVKDFERFMLQALNECTPVKRPKRGPPWGDRTLRRLKTAKAAAYRDYLLRRCPAALRNYNTAHS
LYRRYNRFRYLGHVRRTVLRCRGNSRVLWNFANNRRKSSGFPSSVSYNGRNGNNPSAVCDIFASRFAATFLPAVTDERQI
ADALSNVPVDAMAPNLPIIDEYSVSKAIDRLKSSFAPGPDGIPASTLKRCGTTIAPILASIFRDSLRSGIYPACWKTSWL
VPVHKKGDKSNACNYRGITSLCACAKVFELLVYEPLLAAASNYISTAQHGFVPQRSTTTNLVEFVSLCHRTIDAGSQIDA
VYTDIKAAFDSVPHALLLAKLETLGLPVQLLAWMRSYLTGRTYCVKMGPHTSRRIDASSGVPQGSNLGPLLFVIFLNDVT
RLLPPDGHLLYADDAKLFLPIRDRSDQLRLQATLSAFQSWCSLNGLELCVEKCVVVTFARKRCPLVYDYALNGSTIGRKS
CVTDLGVLLDEKLSFHDQLEHVVTKGNQLIGLLKQIARDITDPICIKTLYCALVRPVLEYASVVWWPTAARPLARLESIQ
RKFTRFALRSWSVQLDYEGRCALLGIETLKQRNCNAQRLFVAGLLDNRIDSPALLSRLNMYVPPRSLRARSLLDVEERRT
RFGSSDPFIRMCREFNVICDRHQPDMSRTALLNSIRV
>CR1-7_AMi_pol#LINE/CR1 744-3650[Crocodylidae]
TSSDGGQGGKKENIRNLQSMGHPAVQHRRQVSNKKPASEPGGAGLKCLYTNARSMGNKQDELALLLAENTYDLVGLTETW
WDSTHDWAVHIEGYKLYRKDRVGRRGGGVALYVKERYTSTLIKMELEEEEKVEGLWVRIHGGQGERDLVVGVCYRPPHQG
EELDLELLRQLSETIKTREAVVMGDLNYPDICWETQTANSHRSHRSCRFLSCVQDLHLTQEVHGPTRGNALLDLVLATGD
DMVGDLQISGHLGDSDHQIIEFTIRRRVGKVTSRVEVLDFRKADFSELRRLVNDALQSKRFGEMGAQEGWLCLKEAILRA
QRETIPMRGKRGKGAKRLPWLTREIQSSLRAKRGAYKQWKQGEITKEEYTSSARSCREAVRKAKATMELRMASQVKDNKK
LFFRYIGSKRKAQGGIGPLLNGQKQLVTDRGDKAELLNEFFASVFLNEGQDKSHNGIVERQQQGARLPSVDPEMVQSHLE
GLDAFKSAGPDELHPRVLKALADVIAQPLARIFEHSWRTGQVPEDWKRANVVPIFKKGRKEDPGNYRPVSLTSILGKVFE
KIIKAHICESPAGKIMLRGNQHGFVAGRSCLTNLVSFYDQVTKHLDAGVGVDVVYLDFRKAFDTVSHPILVNKLRGCDLD
DYTVRWVANWLEGRTQRVVVDGSVSTWKGVGSGVPQGSVLGPILFNVFISDLDEGVKCTLSKFADDTKLWGEVDTPEGRE
QLQADLDRLDKWAENNRMRFNKEKCKVLHLGRKNVQHTYCLGNDLLGGTEAERDLGVLVDSKMNMSRQCDEVISKANCTL
SCISRCMTNRTKEVILPLYRALVRPQLEYCVQFWAPHFKRDVDNLERVQRRATRMVKGLQAKPYEERLGHLDLFSLRKRR
LRGDLVAAYKFIMGAQKGIGEALLTKAPLGVTRNNGHKLAESRFRLDIRKNFFTVRVAKIWNGLPREVVLSPTLGVFKRR
LDRHLAGVI
>CR1-6_Crp_gag#LINE/CR1 98..778[Crocodylidae]
MRKREKRNHLGPXSNKQXSSQLRWEGVLGRRAAREGQIKRPREMAGXRRNARATATACTCEVSVQAGPLTIEASTQVQVW
HCGDAAWVPSSDSQVREYLWCERCLLVVSLREQARELQEEVVRLRSILCHEEFIDSMLEETSRTVEEEMPDAVLEKREET
CTPEGGSWRLVTSGSKQRSSPPLAAVHLENRYAALATERKEHVPLVEEDRPGLTKVGRIEMTATKRK
>CR1-4_DWi_gag#LINE/CR1 463-1271 via tfasty with CR1-3_DWi_gag, 1 frameshift. [Drosophila willistoni]
MPVCSVKNCLQPAPPLNSFIYCWLCENYSMMSLSASFLKLSQEFKAVESQFSSLTLLTESRKRKKAGEQTSDLSLCLPVS
TSISVPTPSQPMQTPIPQTMSVVSVLSGQESTPMDFADRDSSDSSAGMPLVATDATINAVADAIPAMPKPLVGVPPKKHI
FVSRLLPDATSDDVMAHIRAKLNVSNISIEKFKFSYSREISSFKISVPIEFFDCICSSSFWPKSLIVKEFTSRKKKTRGQ
TRIPSPSIPLSSSSIPTPSLSIPSSTLSKN
>CR1-1_Lme#LINE/CR1 93-2842 via tfasty with PlatCR1_pol, 1 frameshift. [Latimeria menadoensis]
MCDLESLIGCDDLDIIAVTETWWNDSNSWDTSIAGYNLYRRDRDLDKGGGVALYVKDYIEAHVKEDIKKNTVNTESLWVE
LRDGNRGKLVLGVFYRPPGSNEIQDLEMWEEIKKAAEMGPTIIMGDFNLPGIDWVNGRASAKVEQDFLELIDDCFMTQFV
QEATRGNNVLDLLLCNREDWVSGVRVDEQLGTSDHNTIKFNIIRSEEIFKTKSKFLNFKRANFNRLRTLVEIKLMGLSME
GSVEKIWNDFKGILLEAIDQCVPLRNKGLKGGKCPIWLDSSTKELIKMKKRAFKAMKLNNNKETRLWYKKMRHDCKEGVR
LAKKNFEVKLASEVKDNNKKFWGYIKQKRGNNPRIGPLKVDNTKGMITDASQTATVLNDYFISVFTKEEMSNLTKLAQEP
PSGLAMCNSIQITSRMVADQLGKIRVNKSQGPDGMHPRVLKELSNEISGALAEIFQKSLETGVVPKDWRRANVTPIYKKG
CKSDPGNYRPISLTSVVGKIMETIVKNSILVHLETQGVIKNSQFGFTKGRSCQTNLLVFYEAVTKEMDKGNAVDVIFLDF
SKAFDTVPHKRLLLKLKQTGIGGNLFRWIQNWLMDRSQRVVVQGIASDWKDVKSGVPQGSVLGPLLFNIFINDLEEGVKS
TLVKFADDTKMMKVLDSDSACDELQKDLDTLQNWAVKWQMKFNVGKCKVLHLGVNNPKRLYYLNDQKLESTDNEKDLGII
IDDKLKFSHHSNMAVSKANKMLGIIKRTITSRKMEVILPLYRALVRPHLEYCVQFWSPRLRCDIESIERVQKRATRLIEG
MEGLNYNERLQKLHMFTLEKRRMRGDMITVFKILHDPDTMVHDELFHLVNESRTRGHNLRVRGGKFKTNLRKYYFSERVV
NLWNMLPCEAVEAKSINVFKNELDKFLMRKNIVCYDY
>CR1-1_DT_pol#LINE/CR1 1538-4371 via tfasty with CR1-1_DWil_pol, 1 frameshift. [Drosophila takahashii]
KKLKGLXLAYQNVRGXNMKLPKLYADSSAFXDDILAFTETWLKPEIXDSEVLSMNFNTYRTDRFPRMGGGVLIAVTSSLX
SERLXXHVPNDIEFVSVKVSXQSSSIFXTCSYIPPGSDLIIYEHHLSAIKSVLSFLSNRDLLIVLGDFNLXNISWSLPTD
SLVATPLSAHDFVDGLLELSLQQVSFIRNSLNRQLDLVFVLDPHEVTVSRIDALVVPEDRYHPTLELTIGLPCTDTLSPL
VPQTKTRCFXKCDYNKLNYMIXQYNWTDLYNCVDIESAIELFYSVLNTFFDECVPDRLPPKLNRPPWFNNALQRLKNLKS
NTYKKYKKSGKPSDFSKYVVARSDFNVLNSHCYSMYLNRCKFEFSNDPKQFYNFVNAKRKSSALPSSVRLNSKEASSDSE
IADLFAXFFQTTYSSAAWSXSXYPNPLNRANCIFTPVITESSLLKDLASTTPTYSPGPDGLPGCVLKFCXSTICKPILKL
FXLSISSSVFPTIWKDSFIIPLHKKGAKADAQNYRGISKLSAIPKAFERIITSHLQHLCSSLISPCQHGFVKRRSTTTNL
LELSSIVINGFNNKMQTDVIYTDFSKAFDSVNHSLLLFKLDLLGFPCNLLTWISSYLNGRTQRVIFKSAVSKTIHVTSGX
PQGSHLGPLLFTLFINDLPSIVTHSRVLMYADDVKLCLTYNNIESGFGLQSDIDRFQVWCEYNLLNLNCXKCNVMTFYRG
TPTFISYSLQNXPLDRIYSXNDLGVLLDPKLKFDCHIMXTVNKAMSVFGFIKRWSKEFDDPYTTRLLFTSLVRPILEYCS
SVWSPQYQVHIDRXESVQKKFLLFALRSLNWDQNVRLPSYQSRLLLLNLPTLENRRIMLGTIFMHNLIRGDIDSVELVNR
LTFNVPVRLTRNYYPLNLPRCTSNFTLHEPFRVLCXNYNDLYHLICTSTSIPVLKTKILXHLLQS
>CR1-2_DBp_pol#LINE/CR1 1450-4281  [Drosophila bipectinata]
LNNIVFSCCYQNVRSILGKLSQFFTKSASFDFDAIVLTETWLNSSVSDYEILVSKFIVFRLDRPTFAGGVLIAVTNKYPS
EIIPFTNEFGIEFIAVKILTGSSHIFLTCSYIPPMAEDIVYFHHLDAIRSVSSLAKDRDLILIMGDFNLPIISWIPSEVD
NSLLSSCHNDFIDGLTDLALLQINPIHNTHGRFLDLIFSNVSSSVTVIRSPPLSLPEDIHHPTLLASVLIDVPHNDACFN
AKPRFKCFRKTDFIALRNHLAEIDWNFLSSINTIEAATDSFYEIIHNALNKFVPEVPVSLSTKPPWYNKHLSRLKNRKSR
AYKKFLKSGSMCHQSNFLYVRNQFIILNDLLYKQYIRNCKVNFRNDPSSFYSFVNMKRKSNLFPPSLSYKNISHSSEQGI
ANLFASFFQTTYSSDSYNHNSSYPYKLPHINNIYFTKFRIQDLFEALSTIDISFSAGPDNVPSCVLRYCSDILCYPLTIL
FNLSLELACLPKRWNESFIIPLHKKGSKALIENYRGIAKLSAIPKLLEKLVTFQLQHFCKSIISTSQHGFVKHRSTTTNL
LEFTSFIHRGFLSRMQTDVVYTDFSKAFDSVNHHLLLHKLCLLGFSPHIVQWLTSYLSNRTQRVLFKNSSSQIINVSSGV
PQGSHLGPLLFVLFVNDLPSVVNYATTFMYADDVKLCLSFSDHFLHRHLQLDLNEVFLWCSNNLLLLNCSKCKVMTFNRS
VPHIVSYSLGNNVLDRVFLINDLGVIFDNKLSFNDHISLTVNKARGVLAFIKRWSKEFDDPFTTKTLYVSLVRPILEYCS
SVWSPQYFVHQRRIESVQKQFLLFALKGLNWDTATSLPSYNCRLKLLNLPPLKERRTCAGVMLLHVLILGQVDSQVLLEK
LMFSVPNRVTRSFRPLWLPISRSNFAEHDPFRVICKNYNSLSHLMSPELSLDVIKSKIMEYLLT
>CR1-4_DEl_pol#LINE/CR1 1653-4484  [Drosophila elegans]
LRKTNLSILYQNVRSLLGKLSKVYVNSLSTDADVIALTETWLNSSVSDQEIFVDKFVIYRTDRISLGGGVLIAVHNSLSS
EIFPFKNPLSIEFVAVKININNINIYITCSYIPPRSDTSLYLMHLSAIQLVSSSIADEDHLIIMGDFNISNVSWISSLDS
NLLFAESQHDFIDGLTDLSLGQINFVKNHLDRLLDLIFVNNDTLANVLRSPPFSLPEDPYHPTLLLNVEIVAEIQTKAAL
RVKCFRNANFVGLHQHLSAIDWSFLKSCNDIETAVSSFNLTLQSSLNLFVPEVSVSDSSKPPWFNRHLSYLKNKKSRLYK
KYLKSNSAVDFSNYVTSRVLFFNASKLCYECYIAQCRDNIRNDPKSFYSFVNSKRKSNAYPSTMYLHNRTESSSLDISNL
FANFFQSTYSLQSYDFSTPYPYDLPCINNIFVPQFEVSDVLKALLSLETSYSAGPDNIPSCVLRNCAEALSWPITFLFNL
SLLSSEFPRIWNESFIIPIHKKGSRSDVENYRGIAKLSAIPKLFEQLVTCQLQHMCASIISPAQHGFVKQRSTTTNLLEF
STLIHRSFLNKCQTDVIFTDFSKAFDSVSHSLLLHKLSLLGFPPNLLNWISAYLSNRTQRVLFNNQLSSVVNAFSGVPQG
SHLGPLLFVLFINDLPKVVSFASTLMYADDVKICLSFSDQMSYLRLQSDIDQLQLWCSNNLLLLNHTKCKCMSFYRTTAH
IHSYHLGNSTLERITQVTDLGVLFDSKLCFKSHISVIIGKAKGVLAFIKRWAKEFDDPYTTKTLYISMVRPILEYCXCVW
SPQYIDQQKLIESVQKQFLLFALRQLNWDPVRRLPPYSSRLMLIDLKSLKHRRMCSGVIFLHKLLIGEVNSGLLLSYINI
AVPSRFTRTFRPIHLPICRSNFALHEPFRVLCSNYNAVYPAISLENSIDRISSNIYAFLESYNI
>CR1-2_DK_gag#LINE/CR1 371-1333  [Drosophila kikkawai]
MVSNXICDIKGCQKEVLADQPSLHCWLCDAVVHAKCLSLTGRIADAISAKNGLRYCCHACREVEKDMLSFMRQTKSGFSE
LRVNFRKTNDLFTXLDAQFSGMKLLSESPKRKKSAAGRLQLGEPQPPKIWHTPSAQPPTPTPTPMVLRSGTAKDSAFEGA
GAXMAAXPPXLLVESAAGSQSLTPQTSKKISAIPKGKNRAEPLAEVGNAALPKTLTAIPPLKTIFVSRLAPDLASEDVLA
HIXSKTQAKSVKVEKFNFSYPRDISSFKISVSLDLFDTICSGDFWPEHAVVKEYEVKIKKKRPSRPAQTTVTAGVTAVPK
N
>CR1-8_AMi_pol#LINE/CR1 3-2450[Crocodylidae]
GIYYRPPHQEEELDLEFSRELMEAACSRDMVVMGDLNYPDICWEEHLARSDRSCRFLTCVEELYLVQEVNGPTRGKALLD
LVLAKGDDLVGDLRIEGNLGDSDHEMIEFTIRRRAGKSASRAEVLDFRKADFNELRKIVGETLWEEGLEGKGVQEGWSFL
KGTILRAQKRSIPVCRKGGKGAGKPSWLTRGVKECLKKKKEAYGQWKQGVVTKEEYTSIARICRERIRKARAVTEIRLVT
EIKDNKKSFFRYIGSRRKTKGNVGPLQNGTGQLITDSQEKAELFNEYFASVFLHANGGRPPGRILDGCGRGDCQPMVSVE
LVREHLERLNVFKSAGPDGLHPRVLRELAGVIAGPLAKVFEDSWCSGEVPEDWKRANVVPIFKKGRREDPGNYRPVSLTS
IPGKILEKIIKKSICERLAEGMMLKDSQHGFVAGRSCLTNLVSFYDQVTNRLDVGDAVDVIYLDFKKAFDMVSHDALIKK
LGDCGLAESTVRWVGNWLRGRTQRVLVDGSVSSWREVASGVPQGSVLGPVLFNIFINDLDEDVESTLAKFADDTKLWGKA
VTLGDRMRIQADLDKLERWAERNRMQFNKDKCRVLHLGRSNQRHEYRLGGDVLASTMAERDLGVMVDHRMNMSRQCDAVV
NRANSILGCISRCVASRAKEVILPLYSALVRPQLEYCVQFWAPHFKKDVENLERVQRRATRMIKGLEDKPYEERLRDLGL
FSLGKRRLRGDLVAVYKYVRGEYRELGEKLFTRAPQGRTRSNGHKLLEDGFRLDVRKNFFTVRVTRIWNRLPKEVVQSPT
LEVFKRRLDRHLAGII
>CR1-18_CQ_pol#LINE/CR1 2-3001 [Culex quinquefasciatus]
ADGPXRTSTPIPGSTTTLSNVPPVSAAPTHAEQSGVTPVVDERLLLYYQNVAGLNTKISDYALAISDAIYDLYAFTETWL
NEDTLSHQIFGPGFHVIRADRSAANSVKTSGGGVLLAVRSNLRPRQLSPPHCSALEQIWVALPLASTTMFICVXYIPPTH
TNNSEIISQHCDSLSWISSQMKPNDSILIIGDFNLPCLRWTLNPAGFFIPDAKHSTINSTVSQLLDDYSIANLGQLCGIQ
NNYGNVLDLCFASIGMSTSCNLTQAPSPLLRACRFHQPLLVSIECRVHAFRDTSSQFFYDYRRGNFQGMNEFLKNVDWNH
LLADRDANSAAVAFTEVVLRAINIFIPKKLHLPACHPAWSNDQLKRLKTQKRAALKKFNKHPTRRWKVQYNSINRKYSRL
NNTLFLRYQRXIQHRLKQNPKQFWNHVNSQRKETGLPSVMELDSREASSPIAICELFRSQFSSVFTNEDLDDTTVQQAAS
NVPDRDTIAQHPLVDPDTVSRTCSALKYSTSSGPDGIPAAVLKSCSDSLALPLSKLFNISLKSGVFPLSWKKSYIFPVHK
KGPKRNVRNYRGIAALCAVSKLFELIVLDHIKLNCNNYIAQEQHGFMPKRSTCSNLVAYTSFISQSMQKRQQVDAIYTDL
SAAFDKINHRIAFAKLERLGFCGSFLKWLCSYLSDREMCVKIGDVLSAVFAVFSGVPQGSHLGPIIYLLYMNDVHLLLKC
HKLSYADDIKLFAVINSSNDALLLQDQLNIFAHWCDDNRMVLNASKCSVITFTRKRSTISFDYNLSNTSLSRSSSIKDLG
VVLDCQLSFIEHISYTVSKASKVLGFVFRVAKHFRQVSCLKALYCSLVRSTLEYCSVVWAPFYQNGIERIEKVQRKFTRY
ALRHIPLVDPLNPPSYADRCNSLGLDLLSVRRDVAKAIFVSDLLKSSIDCPEILEQVNFYIQRRTIRSHQFIRIPRASTN
YGRNAAVSSMCRVFNDCYVHFDFHLSRNVLRKLFLNHFKT
>CR1-15_CQ_pol#LINE/CR1 16-3369 [Culex quinquefasciatus]
MATPTPSDTAAPPFAAADLTCPGPVVGVRDRSCQTCPTGKYPYISNTSSSERLPIFSPSTVPDSTRRLPSAEAVMVSQLM
DPAPLDNPSHRAALPSPGRSLDGTMEVPNRSDAVALPASGQPSRPGPAFGSREGVFQQQTPGEYSESTVFSSPDNPLACS
PPRHLTIYYQNIRGMRTKTEKLRLALMSSDYDVVVLTETWLHGNILDSEFSANYKIFRLDRNTATSSAARGGGALVAVKS
DLGAREVELANCERLEQSTVRINFHSFSLFVCGIYVRPRTTPDVYTLHAESVQQILEKATDQDVVVVVGDYNLPDLVWVF
DEDVGGFLPANASSDAEVALTESFLANGLVQINFLLNNSNRLLDLAFVNDAAAFELLQPPNSLLPIDAPHPPFVLKLEIC
AHTPASESIDPVAEEFDFKRCNFETLNSRLEAVDWSTMDTAGSLDDAVTEFYDQLLNVLRDTVPVRARRFRCPSRTPPWW
NSQLRNLRNQLRKARKRFVNRSSWGNKVTLSYLETEFAEQQVTSYQNYIAGVQDNLQSNPKNFWSYVKERKQVGEIPTDV
SYREEKSTSPEAAANLFARFFETVHSSQDPTVPPEQLNELATYNINLPLLTVSVAEVKKALGSVDAAKGPGPDRIPPSVV
KNCCSSLARPVTSIFNRSLSEGAFPSEWKVASITPIHKSGSRAKVENYRSISILSCLAKVLEKLLVDHIYPSVKNIISEY
QHGFMKQRSTTSNLMAYTNWIIRRMEKRQQVDAVYIDFAKAFDRVPHKLTIAKLTALGLPDWVTRWLNSYLVNRSAYVKI
AGSLSTCYEIPSGVPQGSHLGPLIFVLFINDLCSRLQSCKLLYADDLKIFRRIGDSDDVRALQEDINVLLRWCVQNGMEV
NEKKCKLISFYRIRSPNLAEYNMGRSTLERVHSIVDLGVTIDCKMEFNQHVSISVAKSYAMLGFLRRNAAGFTDVRVLKT
LYFSLVRSVLEYAVPVWAPYYAVHQQKIESIQRRFVRFAARVLPWNDPVTLAPYTNLCALVGLPTLQHRRVLLQRLFVFD
VLRNNIDCSDLLEEVHIRVPSRELRNHQLLDIPRHTTNYGHHNPLDACCRKFNHSTILENFDFNVCKSVFRSRILLLS
>CR1-21_BF_pol#LINE/CR1 1-2354 via tfasty with CR1-D_pol, 1 frameshift., fragment [Branchiostoma floridae]
LEAIRDVYLFQHVDFATRHQANQNSNVLDLILTNEMHMIDTVTSRPPVGKSDHIMLEWSYKCYVERSQNGREFRLYHKGH
YDDMREDLEKDWDTMLEDLDTNECWEVLSETVRKSSDKNIPKVNATQRRRRLSWKDKETTNKLNKKPGRDTSTQEGHVDY
VKYTKLRNQARWAARKAVKKHEKEIARNIKGNTKLFWKYVNKKSKTRHNIPDLMDGDEKARTDVEKAEILNKFFVSTFTK
EDTRCIPQPEESTYKQELKGIELNIEDIQKRLENLNPNKSMGPDQIHPRVLKELAGTLAPPLYILFQKSLNEGEVPTDWK
IGNITPLFKKGCRKTPGNYRPVCLTSVVGKVLEGIIRDEIIKHMRRNELFTRQQHGFLPGRSTVTQILECLESWTTWLDQ
GIPVDVIYMDFRKAFDSVPIQRLLRKVESYGIKGSLLKWIASFLENRKQRVCVNDSHSRWSEVHSGVPQGSVLGPVLFTI
FVNDMPNAVTCHLKLFADDTKIYRTVPNIRDCEALQQDLDSLQLWASRWQLQFHPDKCTVIRIGGGHPDFSYKMKDEANP
LPLSLEFTEEEKDLGIIVDKDLGFNKHILTITKKANQIMGLVWRTFEFMDKCMFLTLYKSIIRPHLEYGASVWSPHLWSL
AIEIEKVQKRATKRVPGLADLPYPERLRSLHLPTLVYRRLRGDLINTFKYTKGLYDTPCLVHLSVETRTRGHQLKLKRSL
AKTNTRLYSYTNRIVSWWNNLPEEVVMAPTVNGFKARFDKHMKDHPVVYNHRALDHPLRPKMSVS
>CR1-22-NV#LINE/CR1 2-2293 via tfasty with CR1-27_BF_pol, 5 frameshifts. [Nematostella vectensis]
KENILDLVLVSDINLVDSVFVEGNNCLPSDHKCIYFDFRCSAKIIHSPSRYVYDFKNADFASLRGHLQTNCSAIEWDSHD
VNNSLRSWKSAFLDAVDTFVPRRNVKNNQRAPWIDSRSRVRYKKVRKSKDPAVFEKFRRMRQRIKNWIRANRKAYFTRIA
SEVHSNAKPFWSFFKTKSSSQLLPETMLGGNNEVTEVTLSDLLKAEAFSNHFKSIFRVPLPVLFPAGTLCISHVLSSIAL
STQEVLQELQALNVNKAMGPDLIPARLLVECADAIVKPVCSLFNLSLASGEIFSEWKDANLTPIYKKGPRALFSNYSGIS
LLPILSKVLEKCVARQLVSFTVGRIYHLQHGFREGLSCTTQLLAVLHDIGKTLDRGVETDVIYLDLTRAFLLQKLCALGI
TGSLYRWFKSYLSCRRQRVVLNGVTSNWEEVGSGVPQGSVLCPILFVLYILPDAVSSSIAMFADDTKCFRTITTPNDVQK
LQEDLDSLAKWATYNELFFQPSKCENLRVTRKRQSFEGEYVLGGATLERVTSVRDLGVQVSQDLSWGEHTHNVISKANKM
LGFLRRHCSNGLPLDLQKTLYVSLVRSHLTYASQVWAPCQLGSLHLMRSLERVQRRATRYMFQGLELDYKQRLLNINLLP
LCYFLEYLDLLFLYRCIKGEIHMDISSIIQVSNSSTRRGSTGLDIRLIASRTSTFRESYFVRVCPAWNALPLQIRSSERT
SLFKSRLKSLLATRLSEVFHPDDIRTWRILCPICRQCNIDSVCRC
>CR1-21_CQ_pol#LINE/CR1 1-3867 [Culex quinquefasciatus]
RQLGVPQKPSRGVKCHQSAWEYGGHRAPKPVKLLHVXEFPKSQEMSIPHSHPSAPIDSQPPRDVAGCPAAYVVGLGRTYQ
SIEVGPHSSDTTEPIADTVSSAQICSSHQRRPGHVFGHGSGANQASILGKYLRSPGTSSLPHVPVAFSDRYSSDVEFELT
SRFLNGPSNDYTHLAEWAGACELFTSDNVPVLEGCQCPGCFLVPFTQPPRDPGGQLAPQPVTFLCFNCIQKNHEISVLHS
PSSTRRHPSCPDPSCHALKDTGDFAAIVPSPEIADAQATQDPLPDILSQQDISSGLQPVAFQQVRFYYQNVRSLNNKVDE
FFLACTDCEYDVILLTETWLDGSVKPLQLFGDLFAVYTTNRNPANSRRKVGGGVLIAVRKTLDSVVCVEAAADNLEQIFV
TIHLKNQKMFIGCFYLPSEKRYEHQLVEQHLTCIETVRSISAPNDTIVVVGDYNQSHLVWKPLAGNRSFVDPLLTHTRGA
SERTTHEVLLDGIASNNMHQSNLVCNHQNRILDLVLINDGATHSAPEAALESLVSLDNYHPALTFEVSAALNNSYEDTLD
PLGLNFRKTDFVGLQRSLGETDWSSVLTSIDVDEAVAAFGQILRSNLTRHTPGFLPARKPAWSNERLRKLKQFRASALNR
YSQRRCPETKRVFNAASSRYKAYNKRRYAEHIKRTQANLRRNPSQFWKFVKSKYKETGLPAVMTLGETVATTNIEKCELF
ARHFASVFRPPGTPPTSQQHLETVPCDLIDLDVFQITEDMLKRGIQKLKSSNSPGPDGIPPVIFKRCFNQITAPLLRVFN
LSMSQCKFPEEWKRSVMFPVFKKGAKRSVENYRGITSLCSGSKLLEIVVGEVIMFNCRPFISSEQHGFTPGRSVTTNLME
FTNFCIENLAAGRQVDAVYTDLKAAFDRIDHDIALQKFAKLGFSARLCRWLESYLKNRIIQVKIGTSLSMEFSNGSGVAQ
GSNLGPIVFNTFFNDSNSLFNDNCNLSYADDFKIFLAIDNLPDCYRLQSRLDKFANWCALNRLELSVSKCTTISFHRKTS
REVFTFEYTLDGHALERLKVVKDLGALLDEPLSFRPQQAAVVDKANRQLGFLFRMTREFDDPLCLRSLYCALVRSHLESS
AVIWAPYHQNWIDRIERIQKKFVWFACRRMPWTDPTRLPRYEARCNLIGLETLENRRTISKSIFAAKILTAQIDSPNLLN
LLNTQISSRDLRNRPNFLARPRVRTEFHNNSPVRSMSAAFNEMYFLFEFHEPIPRFREKLRIEFQERTRTLLGAPRQDPV
VGRLRIGRQ
>CR1-14B_CQ_pol#LINE/CR1 1500-4478  [Culex quinquefasciatus]
MVNNGLRSAISPAPPPTDPRTTNQAALHREEATNLLLYYQNVGGMNTTIANYYLAISSASYDFYAFTETWLSTTTLSSQI
FGTEYEVFRCDRSAANSCKDSGGGVLLAVRSSLKPRQLIPPNCTCPEQVWVSVPLASSTLFVCVVYIPPKFDNDATLFEQ
HRRSLTWILSKTKVNDSIMIVGDFNFPGIRWTRTPTNKLLPNLALTPSNKLKHDLLDEYSTANLSQLNDLCNSSNNVLDL
CFASSXVPVNCALLPAPSPLVKDVRHHLPFLVSISCTVFTFSDTNGSTFIDYRNGNYEGMNEFLATVNWTRLMANLDANE
AAVTWTEILTQAINVFIPKKQRQPPQHPPWSTHRLKKLKTVKRAALKKYAKHPTDRWKNHYRAKNRKYSLLNNQLFRRHL
NRIQSRLKREPKKFWNHVNEQRKETGLPTSMVLDGDEATTTESICDLFRRQFCSVFNNETVADSQVARAASNVPLRPPIG
PHPVISSESVRRACARLKSSNSCGPDGIPAVVLKKCCDALAEPLAQLFNTSLSTGVFPCFWKKSFVFPVHKKGPKRDVRN
YRGIAALCAVSKLFEVIVLDFIKFNCCDYIAQEQHGFMAKRSTSSNLVTYSSFILRTMQKRKQIDAIYTDLSAAFDKLNH
RIAVAKLERLGFSGSLLEWLRSYLTGREMSVKVGDVISAIFAVFSGVPQGSHLGPLIFLLYMNDVHPLLKCHKLSYADDI
KLFTVIEETGDCQFLQEQLNRFANWCSDNRMVLNATKCSAITFTRKRNKISFDYTLSNTTIPRTSCVKDLGVMLDSKMTF
TDHITYMVSKASKTLGFVFRIAKHFRDLGCLKALYCSLVRSTLEYCSTVWAPFYQNAIQRVESVQRKFVKYAQRHITWPD
PLNPPSYAERCKMLNLDPLSVRRDVAKAVFVADLLQSSIDCPAVLQLININTRRRVLRNHSFLTVRRALTNYGHNEPVSS
MCRIFNLCSDHFDFDLSRDKIKIRFLNFLKSLP
>CR1-9C_AMi_pol#LINE/CR1 1598-4507[Crocodylidae]
LASSGDGDAEFRTRSGRTSHEPHAGNDQVSTKGPTKNQDRGILRAPIGGLRCLYTNARSMGNKQEELALLLADKDLDLVG
LTETWWDPTHDWAVGIEGYRLYRQDRLGKKGGGVALYVREHYTSSVIKMGTEDGQIKVLWVRLQGGRGERDLVVGVYYRP
PHQGEELDLEFSKQLSKAARSKDLVVMGDLNYPDICWEEQSARSAHSRRFLTCIQDLHLTQEVCSPTRGDALLDLVLASG
EDLVGELQVQGNLGDSDHQLIGFTIRRKVGKTNSRAVVLDFRKANFNELRRLVRVGLRGNRICEMGVQEGWEFLKGLILQ
AQRDTIPVHAKGGKRAKKPSWLSREIQESLQRKKEAYRLWKQGAATKEEYTYLARACREAVRKAKADTELKLATKIKDNK
KSFFKYIGSRKKAQGNIGPLQNGLGQLVTDRMEKAELLNNFFASVFLDTDTNAPPNESLVWSESNTNPPTVSTDLVKGHL
EGLDVFKSAGPDDLHPRVLKELADDIAEPLAQLFERSWHLGQVPEDWKRANMVPIFKKGRKEDPGNYRPVSLTSILGKTL
EKIIKDHICRGPAGNTMVRGNQHGFIAGRSCLTNLVSFYDQVTKCLDAGEEVDIIYLDFKKAFDTVSHPILTSKLSSCDV
DFFTVRWVKNWLMGRTQRVVVDGSVSPWRDVGSGVPQGSVLGPVLFNIFISDLDEGVESTLSKFADDTKLWGIVNTLEGR
ERIQADLDRLGKWADQNRMQFNKDKCKVLHLGRKNLQHTYRLGGTILSTTTVERDLGVLVDAKMNMSRQCDEVISKANCT
LSCISRXITSRSREVIIPLYAALVRPQMEYCVQFWAPHFKRDVDNLERVQRRATRMVEGLQVRPYEDRLRDLNLFSLRKR
RLRGDLVAAYKLIRGGQQGIGDTLFTRAPLGVTRNNGHKLKENRFRLDIRKKFFTVRVAKIWNGLPREVVLSPTLEVFKR
RLDRHLAGVT
>CR1-9_AG_pol#LINE/CR1 1305-4208 Identical to gi|55236949|gb|EAL39465.1| ENSANGP00000017291 [Anopheles gambiae]
NVRSTSITVYYQNVRGLRSKADEFRLTVLEADYDVVVLTETWLDPSLPTALLFGDAHCVYRCDRNAANSSLSRGGGVLIA
VSSALRSHALPVLAQTLEFACICIQLPTYRLYIAAAYLPPNHSTDEGKINALLDTVNSICDTLGPNDRFVLVGDFNQPAL
SWSPAQSNHETPFVFFEPHTSSVRSAQFVDGLHQNALYQLNNNTNSMGRILDLAYGNWSSAATSSLIRVSEHPLLPIDCY
HPPLEFDLEITASSMNHATTVTEIKLNYARADLTKLKRLICSFNQSFECSNYTSIDHATNDFSEFMRAALRECAPIKKPH
RGPPWGDRTLHALKKAKRAAYDYLRANRSTPCRLYYNGAHALYRCYNRVCYRRYIRQTERSLRKYPRRFWSFADNMRKST
GLPGTIRYKDNCAHSPLDICELFATRFEDSFISNITPPEAVASALVNTPADAIHVTLPIVTETLVTQKIERLKSSYSEGP
DGIPATILKRCAVSVAPVLTKIFNESLRTGTFPSLWKVSWLTPIHKKGSKNEAVNYRGITSLAACAKVFELIIYEPLMAS
AGKYISTNQHGFMPKRSTTTNLMQFVSGCYKSIDDGMQVDAIYTDIKAAFDSVSHNILLAKLDRLGLSPPLVKWMKSYLC
GRSYAVRMGSHQSRSIGASSGVPQGSNLGPLLFLLYISDLCTALPDNSCLLYADDAKIYREIREPEDHLQLQATLTEFVS
WCKRNALSVCIDKCAIISFSRSRAPALFNYTLDGQNLERVNCVKDLGVLLDAKLSFEEQIDQVVASGNRLLGLVINMTRE
LRDPMCFKTLYCALIRPLLEYASIVWWPASTRALARLESIQRKATRFALRDWPRRLDYRTRCLLLGIPPLAERVEHTRLA
FITGILNGTIDCPELLSSFHLYVPARILRRRPMLAVAETRTTFGSRNPLLCMCRLLNSANDIYE
>CR1-10_AG_pol#LINE/CR1 1-3195 Perhaps extending ca 60 AA into gag ORF  [Anopheles gambiae]
SPRIPRIFGLQCSPGFSSTTAAAIPSQAINRCDPRTRITSVYPYRFSAANFPPVDEPAATTAQSNSTSTPITPLHHAAER
FETLPSVASPITVSAPLPLHASFPHPIDDLRFYYQNTRGLRTKLDDLRLASADTEYHVLILTETWLSENIPSSLAFDNNF
VIYRCDRNSRNSSRSRGGGTLIAVSRKLAACEISPASDSLEQCWIRLKLPSCSLFIGSIYLPPTLSADASTLNTLDASID
EIISRMKKNDRLLLFGDFNIPSITWHASPDPAPPFLPLLVPASSAHSSSLFIDIVRYHSLSQLSSVSNFRQVQLDLIFTF
PKNQSNATSTCTYVSQAPVPILQIDPHHPPLELSLKITGSLTPSNRSQHSSSRLTTAPSLDFRKTDFNLLNTSLSNIDWS
QLYSCKDVNLAVSTFTSLFLSTLPQCCPKRNPPRSPPWSDATLKSLKRDKSRYQRAYWSTRSVNALRTYKYAAAAYRLYN
RTRYNGYILILQTRLRWYPRAFWKFMNARRKGSSLPSTMHLESVYASSPEDICSLFRNHFSNIFSPPSQIPNTASQCLSY
TPQDVIDVSCFGFDEHSVSEALSKLKPSFSAGPDGIPPSLLKKTAEVIAPLLSFIFNLSLRLCCFPSSWKSGWLCPIFKK
GNSADVSNYRGIVLLPACSKVFEIAVHSVISFQVKSWISVNQHGFMPSRSTVTNLMQFASHVIPSLDSGLQVDTIYTDFK
AAFDTVPHHLLLLKLKKLGFSNMLIDWLYSFLNSRSIRVKTDTTFSSSFCPSSGVPQGSVLSPLLFVLFVSDVHAILPSE
GHLLYADDLKIYLTISTHSDCLRLQEFLNSFSLWCSYNQLSLCPEKCSVISFCHNRNPIHYEYSLSNSVLSRTSLIRDLG
VLWDDKLSLNEHLESVVASASRTLGLICRLTRDFRDPLCLKSLYCSLVRSTLEYASVVVGPVRSGWILRFEKVQKRFTRF
AFRRMAGPNAAMPSYESRCNLLGLESLEVRRSQARVLFIGRMLNGLIDAPTLLEKIGLYAPSRNLRARSALNMVSRQTTF
GSNEPLLLCVRTFNTSTDPPHPRL
>CR1-13_CQ_gag#LINE/CR1 1-669  [Culex quinquefasciatus]
KCRVLEIAEAAGAAAPSFVFPTVPVFRFGSTXNRQSGSSRSASGQPQAHNAFQTSQSTLAGFHLPAAXSXTAFSLAANTR
VXPINNNPQSVPQQKAARPRNRKQLQPHLXPFLQPPLVQHNLAPPLQQTAPAFTCKHFYVKPFDPATTAEQIANYIQSRT
GXXYDNFNCQRLTSESRSDSRPLTFVSFKVTVPDVVAFTNVITNSAFWPDFVSVDSFTSRRRS
>CR1-10D_AMi_pol#LINE/CR1 1510-4434[Crocodylidae]
LRSQGDGETLTGAYPGTNIQESSIDNETKQATLTGAEKTAPLQRDRRPVTSVEGLRCLYTNARSMGNKQEELVLLLSTGH
YDLVGITETWWDSSHDWSIAIKGYVLHRRDRVGKRGGGVALYVKEQYTSLQADVGPKEEQLETLWVKLWGRRGERDLTVG
VYYRPPNQGEELDLAFARELTEAARARDMVVMGDFNYPDISWEECSASSDRSRSFLTSTEELFLTQEVHRPTRGNAVLDL
VLAKGDDLVTNLNIEGSLGDSDHEIITFTVRRKADKTDTKLEVLDFKNANFNKLRSLVENALRDQGPQVKGAREEWSFLK
DTILKAQRKSIPLRRKSSRRVKKPSWLSREVAALLQKKKEVYKQWKLGTASKEDYLTMARTCRKQIRQAKAETELKLATR
IKDNKKSFFSYIGSKRKTNGSVGPLLNASGYLVTTTQEKTELLNDYFASVFHKTKGNNMPGRAQNEQGGIDTIPTIAIEL
VYDQLKKLDVYKSAGPDELHPRVLQELAEVIAEPLAKVFQKSWASGEIPEDWKRANVVPIFKKGKREDPGNYRPISLTSI
PGKILETFIKEAICDKLAEGMILNDSQHGFVAGRSCLTNLISFYDQVTRHLDERKAVDIIYLDFQKAFDLVSHEVLIRKL
EDIGLNCGTVKWVQNWLRGRTQRVQMNGSVLSWRDVGSGVPQGSVLGPVLFNIFINDLDEGVKSPLAKFTDDTKIWGCAD
TPADRLQIQADLDRLACWAERNQMRFNIEKCKVLHLGRKNPQHTYRLGIANLTSTTNERDLGVTIDPSMNMSRQCDAVAA
RANKTLACINRCISSKSKEVILPLYSTLVRLQLEYCVQFWAPHFNKDVLKLERVQRRATRMIRDLHGKPYEERLRDLGLF
SLKKRRLRGDLIAAYRYIRGVHQGLGEQLFTRVPWGKTRNNGHKLLEDSFRLNIRKNFFTTRVSRLWNKLPPEVVQSSTL
EVFKRRLDGHLAGVI
>BMMAR3_tp#DNA/TcMar-Tc1 106-1182 [Bombyx mori]
KCILLEFYSFLNMEWTLKEDRVAVIALHRCGYAPIQIFNILKNLNITKRFVYRTIKRYNEDSSVDDRSRSGRPRSVRTPA
VIKAVKARIQRNPKRKQKLLALQMGLSRTTVKRVLNEDLGLRAYRRKTGHRLNARLMDLRLKRCRALLKRYAGKKYREIL
FSDEKIFTVEESYNKQNDKVYAHSSEEASNRIPRVQRGHFPSSLMVWLGVSYWGLTEVHFCEKGVKTNAVVYQNTVLTNL
VEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLK
TSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGHFE
>HARB6_ZM_tp#DNA/PIF-Harbinger 414-1729 [Zea mays]
MFISFLSSKLAFSTHLHVMSSSSTNSSEGAEGAMCNALQAAMEEAMLNLNEESSSRPKRRRRYINRDRESAHDRLHQDYF
ADDCVYPPNYFRRRYRMRRQLFLNIMLRLGEYSPYFTQREDALGRLGLSPLQKCTAALRLLAYGTAADSIDEYLKLARST
ALECLEKFCEGIIHCYGEEFCRRPNVEDIQRLLAKAEERGFPGMLGSIDCMHWQWRNCPVAYDGQFTRGDIKHPTIILEA
VASYDLWIWHAFFGVAGSNNDINVLNQSPLFKDVLKGQAPIVNFMVNGHEYNMGYYLADGIYPYWPVFIKAIPLPQSEKH
QLFANAQAAWRKDVECAFGVLKSRFNIIAVPGRSYSQRTLGLIMRACVILHNMIIDDERDADLDETYETVDSTVGPSIYY
NATPSLAARIQMDNEMTDTSMYTQLLNDLVEHVWGHNNH
>P-34_HM#DNA/P 170-2863  [Hydra magnipapillata]
MPGANCSIFGCGTSRRNKGVSLFKIPSSDDDFNKEWRIKVLNIITKDRVVDESLRSQIKKKLLFICEKHYEANMLIINPN
KTTLKPGSLPTLNLPVKTISNSSSCIFNPKARASASSISLKKSTFPSILDEAVHIKSYKSFKELVKRISLQKLDWDVNIS
DTFLKLSKMDDIHTVPKYEIYIDDSLSFTIRIFLWALPDNHEIYLHLKRSMFNTTVCNLISVLLSYIVCPGIPDKLISSH
GYLLHVIPKNFDLFNSYSLPLNQTEHTRALSCEVVIKKNDICKGCQCLQSQNKLSVKKNSDKLLIPAKLRAPISKTAPER
VKLTLQSYRLENKLLKDKIKEMQQELNKSSHLVSDDLHKDFVSIISKNDSTVTPFMKLFWDEQQKYLNTSKQGIRYHPMI
IRYCLGLVSKSPAVYEEIRFNEKTNSGFVILPSQRRLRDYKNYIRPQRGFNHEIVNELSLKVKDFSDQERFVTLLLDEMK
IQENLVWDKYSGDLIGFVDLGDTNINYATLNKADEIATHVLVFLVRGIVNPFKYSFANFATTNIQAIQLFPLFWKAVSIL
ELSCNLKVIATTSDGASCNRKFFSMHFHMTEIQDNNKNVKFTYRIKNKFADDDRYIYFIADPPHLIKTARNCLFHSASGK
GRYMWNTDNHILWNHISDLFYEDLNCGLHTCPNLSLEHIRLSPFSKMNVRLAAQVLSSSVSIALKTFGPAEASRTAEYCQ
MFNNFFDCVNVKNIVDCTRKQNPFSEPFYLISDERLTWLTEVFLKYFEDWKLSIDQRPGKFTKADRXNMFLSWQTYEGIN
ITVHSVVDLVKYLLNSGVQYVLTERLCQDSLENYFGQQRAIGRRKDNPSLHDIGYNDNTIRNQCTFXPIVGTNSLBNDPE
PKTFIKEKLPRRNWNKK
>HARB-12_SBi_p2#DNA/PIF-Harbinger 999-1607
MLYYTLSLHLAVVQCLTCTMCSCCANVLYTCLFQHETSRANWTSENTXTFCDIYCMQLDLGQCVRGSMSKWGWKDVAERY
YAATGLVHDNEQFSSRVRQLRAMWHFINDLRTKFTGLGRRNDGSILAPDSWWEDKCGVSASALPFTYNPCSNYNCNTYAD
WYNAETSRVEEAQGWVAYVPPTAGPHVLWRSSRRNNIVRYGTT
>Harbinger4_TP_p2#DNA/PIF-Harbinger 3563-1692  [Thalassiosira]
MSAADDQNTAITTPERRNNSGILPSDAGRTAGWGWGSAIRSLVTNNPTTPTTATAAAIITTTAATAATTQPAATTEAGHF
TESPSVTSLVADAADGAATSFVMSLSDVLSLPDDQCKAKVVYVKNNRSFKVLVAMSRGLVDEAGELLFDENVEPWCKLNP
REWQASRDELAAEITRRWEDYVAKVDGKPRPKQWKKSAMLEWLINNPIATLGDGDGTTRDADCMFLRYQMGEMKKLRTDA
IDALAQQQTLLEGNWVGPDPIIRLFHCIIDHAHIMQKFLTRLQSMSRLSLENRNSDLCRDISVWEDVSNVWNDPQYTPTT
EIFNNNLQPREIPHSKVATLAKATPEKCESKFNAVVLNLRRIITMWERSGQGEGGFLHEEEGTQLGMNDFGSLTGRTENA
LSNRTNFVGEKDKHFLYLWDLIDKYDLLKTCMQVFGPEFAAASGDNVRVIYDAKRAQLKEDEDDDASSMSSKQTKSEMFI
GGSIMKLANNNVMIAQINAQEKEKDRQEKEKDRLAAEELHKKQIIEREKDRILQQKQSLEMEVSRLRQDKRAYLLQMSER
DEKRRKSRQNIDAEGGKDCLKECIDDINGEIAEKKAKLEGLLRDETNLTTTPQKSNVTPPRTDG
>Harbinger2-2_HM_p2#DNA/PIF-Harbinger 1734-2387_R [Hydra magnipapillata]
MQWNIEKDIMMMREVAALGVLIQKPGSKERGQLWQQVSDSLNKNGFYVTSRGVRDRLSNIMKKHRAQANKEKKLSGEGGK
EITEYDILVEELIEVSDDTDAQKDEKSQEKKNAVDEDRVKAIDIRNTAMERYGETRKRKALNNEDKSPKTSRRSSNDTLI
FLREKMEADKENRRIEREERAEARALAQQQQNNIQNMFNHMLAQQTEILKMLLEKRNL
>P-33_HM#DNA/P 298-3495 via tfasty and genewise with P-27_HM, 9 frameshifts, 6 stopcodons and 1 intron (2455:2701). There probably is another intron that cold not be reconstructed. [Hydra magnipapillata]
MPGSNCCLPGCTVSRSIKHKDITLFRIPMRTGDFYKKWRQRLLAIITQYRDFDKDLKERLSKGNIYICENHFLAEDIELT
RNHYSLEALPTVNLPIKSHEKEKKVPERRHISIVKDIVTTEAKHTDNYSNLIEFTEKXQKLKLSGWEMTCNENNIKFKKL
LPLYLLPKYEVXLDDSLAFTIIVFGWLLPDDHHLIYKLYSRSMLNTTVTELLCKICTLXFCSGIIENIRNINNDDFVDHI
VPMEFDLESAKKVXDGMRVSNERFKRAKSCIILHTSESDNINSVCSXCTHTLKKNKMIKIKKQHQLATPALRKAPLSKTN
PVRVLLALKQERXRCAQLTSDLEKINFQIDSKGITIDDGFVDDLNQIMSSNYEKATPFMKLFWDQQKKIVXNKNFGSIKY
HPMIIRFCLSLASKSASAYDEXRSSNVLTLPSRRTLRDYKNFIRPKAGLNPPVIEELNKISINLVGYQRYVTLSFDEVKI
QEKLVFNKHTGDIIGFVDLGEPDLYFSTFQKEDSLASHVLVYFIRGIASXLKFALCHFATKGLTSFQLMPTFWEAVGVLE
LTCKLYVIAAVSDGAAPNRKFYRMHSMFDDKLDDCNVVHRCINIYAPERYLWFFADAPHLIKTARNCLYHSGDGRGTRSL
WNDGQQLIWYHITRIVNDEMKNGLKIIPKLTQDHIKLSAYSVMNVRLAAQVLSSSVSNILKNYYPDDTNGTAKFCEMLDS
FFDCLNVRNSSEGIMKRKPFLLPYTDVNDERLTWLQNTFLCYLEKWKECIINRPGNFSNNAKGRMFISWQTYEGLQITVM
SVIELVKFLLKSGMPFVLTEKFNQDVLEEYFGRQRSLGRRNDNPTLYQFGYQSNTLRLQRSIAPVTGNTKGGHGQKREVS
WSVVDNEKLPKRKK
>P-16_HM#DNA/P 231-2835 via tfasty with Galileo_DW, 1 frameshift.  [Hydra magnipapillata]
MVNKCCVVGCTSNYNGGEVVPVFGFPKDDDLRKLWVRFVNRNFWTVTKSSVICLKHFDENLIHKGASAKRFRLLYNLKPV
PTIYPASIATASLPVMSVPRKSPTKRIFQEDEYQKFLSNDVIEDLNSLTVADSPTGYSFSKFDDCVVFHKIIQNELHIPQ
VAECIRIDKNLHVKLFYKNLPVSLPPWFRVTHQCVLKRRSMLENFNSHFSIEKEKLSSILEELKSHQVKKNQIYSSNMLQ
FALMLRYTSLQTYNLLLKEFPLPSISLLGKLKAGEIDSMKVLKLLHENGSLSKDLLIIFDEMYLQKCAEYSGGDIIGISE
ENECYRSIVSFMVVGLKENISCVVKAVPIIKLNSDWLKTEILNLIQSLIKNSFNVRGVVCDNHASNVSSFTKLLNAHGKK
PDDLFINVQSQKIYLFFDTVHLIKNIRNNLLNKKRFIFPEFHFSGFKDEIHVQPGEISWKIFHDLLEKDSLLDASLKKAP
KINNKVVHPGNYKQNVTIALGIFHETTAAAIKSYFPDRLDIASFLTLFNKWWIITNSKNQFSNNCLGNAAIINDKKPEFF
LTKNKWKNTKIPNFEKYTLSPQTLSALQRTLLCHASLIEDLLEDNYKFILTARFQSDPLERRFGQYRQMSGGRFLVSLKD
VIYSEKIIQIKSLIKEGIQIFENDINAVEDTQHARSLMNQIKERDLDCVTLSDDSREVASYIAGFIAKKLNKKFKICCKL
LCTQHCQQELNDYNYLNILSRGGLTTPSLPLLEYVCDSFAMLDHVFDVIYQSRMQHRKAAKLVLGSREGYQPFLCLNTKI
VEKKLYTLLFQIFILITSERESVIPLLQITLLSLNKNREKNKNIFFFALISKFNQFVFNFVYTFKAYF
>P-14_HM#DNA/P 895-3244 via tfasty with Galileo_DW, 1 frameshift.  [Hydra magnipapillata]
MALALHGSKKVDKKLIYNDFEQFLKKIKVAAFTTWTVETSQNYVLFKVIDGKHFIPEIELHVDESLAYTIRAYGWLLPDT
HQIYKSNLRSVRYTMISQFLNHIRDFYLCNGISSNEIENFLLVKRHVVSKLFSIEDEKCDDGPTNETVYFRSSTCSILQI
ESSICKECKILTINSSKAINAKKKILKTPASIKAPVKYTAPERLLLTLQNQRSENRYLKKQILELRQAIEKNAVSVGENI
HQDLQKIINSFSEKVNLNRGVSSFMKLFLSEQLKYLTEHPSQTRYHPMIIKYSLALYAKSPAAYDLLRLQKGGKGILVLP
SQRTLRDYKNYIKPQRGFNSQYVQELAKLVSNFSALEQYIILSFDEMKIQNDLVWDKHTGDLIGFVDLGDDDLTHATFEK
TDTLASHILVFFIKSAMNPLSYSFATFATDSIMSFQIFPIFWRAVAILERTCKLKVIAVTCDGASPNHAFFKMHMNLNDN
KGNDIIYRTKNIYADDKRYICFFSDAPHLIKTSRNCLSNSGSGRCSRYMWNNGKYLLWSHIAKFYYEDMECDLNYFPKLT
RDHIVLNAYSVMNVKLAAQILSDTVGNTLLEFGPDEASGTANFCLLMDKFFDCCNVTNTKEYLKNRKVFLKPYTDCSDER
FYWLENTFLKYFVDWRESIEKRQKNFLKKNLISKMFISNQTYEGLSRTVNSLVECVQFLLSKGFLYVLTEIFCQDALENY
FGKQRTIGCRRDNPNLKDTGYNDNIIKSQFTIQPLGGNVRQHTNEWVIDDTPVPKKLRKNKLT
>P-21_HM#DNA/P 152-2638 via tfasty with Galileo_DM, 2 frameshifts and 3 stopcodons  [Hydra magnipapillata]
MPKKCCVTNCNGNYNKQNKEKVFRLPSDKEEYNRWINVIPRDNIPESPDTVVCERHFPLGYPTVIKFGHKRPRDPPSVFT
CVKPSLIPSVPSPLRTTFKASSSVRNIIPDELDMFIAADQITCFKSLHQKLQNKEINFELVDVTWYFAGEHLLIIQSTDF
EENTSIARFMLKIKNDFSFEGYFCGIKYTIESLSKNRIFILNSSSKLQEAINFLNNLTKSIKLINLLQHISDMSPITIGK
KKYSTETIVRSFEYFAISRSLYGRLREDYQLPSISLLTKLTSKLDSAMNDTEFFKSVYSKLENEMQKNCIILIDEVYVKS
SLTYHAGSVFGKAVNKPDSLATTVLSFMLVSLYGGPQYLCRILPVCELDSKFLFEQTQFVLEGIKSAGGIPVALICDNNR
VNQALFKMFDCVEPWLTKDNMFLLYDFVHLIKSxIFRNNWLTEKSQKLCYEHEGKTKYACWSNILNLFRLEENNIVKLSK
LTNVSVAPKPIERQKVSTCLQVFCDETVTALKSNSNIKEAEGTITLLEIFVKFWKIVNVKGLYADIRYKDPDRAVISTSE
DARLTFLLNLATMAEQMTSKQGKRQFQLTRDTGTALxLIHVVVxLPLLNFCSNTSFKYVILGKFTTDPLEKMFGKLRQGS
GGTYFINVQQVIEKVKIQRAKLSLQIGIDIDSLSAESGHNCQKCGYLLSSNAIDIFDNLPELENSVQIDTKTGLVYIAGY
VVRNDVEEQEDTKFYYEEFGDYTEEINRGGLKIPNDNVCQWTIFSYILFHEIVNKVCRKSLCNMLMLISESYNFNMERKH
AVSLSNIYFKNYGSLYTPRSYKEPKQKIL
>P-27_HM_p2#DNA/P 5526-6695 R [Hydra magnipapillata] ??
MASFSSDFETNSDLECLFDVFEGGFLNDDINLVTDIDSVVSDIDIYRDNVKQHACTQCPKLYKTIRGLKRHIASKHILEC
FEKCSVKMSDTENSSNKLSPLKLKSIVEECASLLEMDMCLPFDVRKKFSCEQFSFSIDDAEHLWQKLKPIIEKFKGNSDL
FYQEYYGLLSENLLASHFSDITLSNTLLTEMSAIILNNLSNINPNIIESVGTTQEITDIEKKSLQYLIGYIFQRLYTKFQ
SSKNLCKYSQQCVSILLRCRVMEDDTQALVNIRDRGGLWKVNNIIQDLFLTCEIIFRKKTTQVSSKLDPEVLIDSMSTNY
IVLSLFKQVCNDPESTEVSKNLLEHLITLFVRVRSFSYAKDVIEKHKMRKKSCKTRSLRCEIKKASEGN
>P-25_HM#DNA/P 255-2735  [Hydra magnipapillata]
MPRKCCVPCCSSGYASSTIKVSTYRFPCDEYEKEKWIKAIPRKNLIVNKYTVVCRLHWPIDCKSFTFYRGKERPTEPPTV
FSNIPASCLSLPISKPRTTKLSSSSIRNTKSDELDSFREHDFFRFDSIKERLLRSNDLIVYNINDNNDVVYIQSKEFVCG
IPKFLVIINRDLTLTSFHLGSSCSIPILISSKTSCCKYWSVFDEIIRYLKNKDICHKKNVLLEHMDCMSQKKVGEFTYSP
DIITRAFEYFAISRSLYSQISNDYKLPSIRTLTRITSKVGSQDSLEFLKNVMMSIENTQRKCILLIDEVYIKSTLTYHGG
VLFGNSADQPGVLAKTMLAIMVKCLFGGPEFLVKMIPISHLDSDFLFKQCKPIIETINNQPNAKLLSIITDGNRVNQKFF
KMMNKVEEKPWCGDNENTFLLFDYVHVMKCVRNNWLTEKSGELVFEFEGNKHVAKWSDLVNLYELESANLLKLSKLNEIS
ISPKPIERQKVETCLRVFCDETVAALKNHPSIKKDEVIGTIKFISIFVKFWKICNVKGVGADIRYKDEYRGVIRSHTDKS
LLFLLDVADMVEKMKKSGAKRIKQLTKDTSECISHVCRGLVNIARYLLDCGNDYVILGWFTTDPLEKTFSKLRQGSGGTY
FITAQSVIEKVRIQHAKLSLQLEIDSFDDCTNGHSCKNCFRSLNEQECEIFDNLPELEDKVQAESLLSIIYIGGYVQRKN
GYDQTDTQFYYKKCGAYIDDLNRGGLVIPFDNIVQWCIFCFILFEQLSDEFCRTFLMKQFLSVSNKFQFGIYDRHCRTLA
NIFLKNLAIIKSPRCSKESRQKVLKLS
>Harbinger-1_NV_p2#DNA/PIF-Harbinger 5639-5181 Probably multy-exon protein; no further similarities yet to hang your hat on. [Nematostella vectensis]
MSQNSTVEDTKPDKRKRKPNFSQRELNVITESVEAKKDILQSKFTNNLTNQMKQKVWLDITAKVNAVGVAYRTVEEVRVK
WKALFSVAKKEYSVAKKGKRQTGGGPPPKEPSEISKQIVEVYDNTPGFSGIEGGFETGIICVLNIIHIHDTVM
>IS4EU-1_BF_tp#DNA/PIF-ISL2EU 107-1979 (1 intron) [Branchiostoma floridae]
MPTSCCALNCTNRKDKGSRKKFFRIPAEPGRRAAWLRALKRSDFEQGKKNPTAAWTPRGHERVCSDHFISDEEMIADPPP
ESVETLRDPLPESVETLREQLTKVQEEKCKLEQFCESLQSEADNLREERDHLQEQIKKSSTSASNLTDAKCKLFTGIPTV
ALFMFVFRLVSDFIAPLKSMCQQDQILMTLMKLRLGLKNADLALRFSVSASTVSKVINRCIPILAVRLKFLIHWPSKETV
KRNLPKKFRKKKYSNCRVIIDCSEIFTERPYNLKTRAKTWSNYKHHHTFKFLVGITPYGAVSFLSSSWGGRISDKDITLK
SRFYNKVEYGDMIMADRGFTISEELALKGATLVMPPFTTGRTQLPGRIVQDARQISTLRIHVERAIERIKNFQILSQICP
LTFAPLLSDSVVICAALTNLLPKLIK
>Turmoil1_tp#DNA/PIF-Harbinger 170-4103 Genscan prediction, 1 frameshift and 2 introns (248:1342, 1838:3009) [Caenorhabditis elegans]
MLNACAQYAQTGSQKLTREANYVITEFYSSEMSSDSDSDFGKEASKAPKRRITDCLFDSDDEVLESPGREELRKRLLSDY
EDVGSVTIDTPKLKNRNVRLRGAGLEVKAGRPQKGGDDYNDVRILRTFSLKFEKFSMEEAKWNNFFDLSRTSLFCGTQKF
RIFTEKKRKGCLRGPKSRGLAIRLWEKEELQIPIIIRRNFALLNNNEAKKEKLCINRTTKKIVDVRNFRTFRDNVDDYLS
DDGMMKLHLGITISVFKKLLTLIRHAQRHLNIHKKFLTGNTQNEISKMHGLSQPTISRIVCGVIDDLVRVSSEYIKFPTT
SDEIETMTKKFYEKEDSNGEERRMPCYGIVDGKHWRCEHPPKSGALNYNYKGFFSFNSLIVSDSDYRILFVQMCKNGLNS
DAQLYQNGPLPRLLTKAIENVGYRTLPDPNVLMPPFILADNGFGLHKSMMQPYRPTQIGLNPEENISFNFKLSGTRVKVE
NVFGVLTSKFHIFQQNLRLEPKTSQALIIAVCVVHNISVGPLEVIPDDPNRPKFRDPYRTAEQQRTALKKYLLDL
>IS4EU-1_NV_ex#DNA/PIF-ISL2EU from gi|156358757|ref|XM_001624632.1| Nematostella vectensis predicted protein (NEMVEDRAFT_v1g217754) mRNA (RepBase entry seems to have accidental duplication) Partly matches Rehavkus-2_CS protein (47% sim)) [Nematostella vectensis]
MSFLMGNPVTFLVPQANNISHSWSSCVRGGLGLPISPCFPAVSCFFSRRERRVCSTKCWGCPLNFGIHGENLAVCPHDTC
TKHDHSEQDQYLYAEPLNYPQMSVPVLSKYATSLEGNIKNHYIQKIGIDPATIPDEELNPECLPPIEQSDLFSFLVLETS
HYTNDQFKNYKSLEAYNQVVSGFVASVKGRIVSDKYVVVAKVRHSQRMNDPLVDIWLITGKDGRIFSAHCLGCKAGLAES
CSHIASVLFYIECWTRINGKLACTQVKCSWLLPTYVSNVTYARAKEIDFSSAKKLKEKLDDNIESFNEYSQSRTVGDATN
KIMTPSVSAEDVSEFYKKLNQCETKASILSLIDPYANQFISKSRNIPVLTDLYESSNLDLKYPELLRKCLEVKINISDEE
IDQAKSPGFFRHRAGRIGASVCGAVFHGNLAQPSQNLIQSICYPHLFKINNKATKHGCKYEEQAIKSYEHHMKSLHTNFQ
IKRCGLFINKDFSFIHATPDFLISCDCCGLGCGEVKCPISDTNGNFNEYSLKASSCLENVNGVLKLKKSHNYYYQVQQQL
FTLPDRKYCDFVVFAIDSDGNSHVLCDRINPDPSHSSGVMKKIETFWRICILPEMLGRWYTRRCDLPESKLIDNVICFCR
GQPNDDIVSCTNADCPYGQFHTKCLSLHNVKMPKQWYCPHCCKLPQLKKRAKAKVAPSQVNQAAMLKTTICICNEKATMT
DRLIECHNVNCSNGNFFHLKCLGLKRMPNNSKTTWLCNICRGKKGNTMPCDKPTTSTSTTPITNPKSPATTSNLSDDDDN
DSEDEIEITKVSTSSGSVNKYAILANLNNADYDIISDPAGWLTSDIIQYAQVLIKEVNPAIEGLQRPTLGRVRNFDVVSS
EFIQILHTRSDHWVCVSSLGCPGYVHLYDSLYHDVISQEIEEQTNDLLGGSLISLDFVPVQQQSNGSDCGVFSIAFATCL
AFATNPSHFTFDIPKMRSHLLSCLKDETISMFPSF
>ISL2EU-3_HM_tp#DNA/PIF-ISL2EU 121-1618 Via genewise with ISL2EU-2_HM_tp (1 intron)  [Hydra magnipapillata]
MISNDTISCDKLITHSIKENITVESTTTTKYRGGITCCVPLCNNNSLKNKNLSFYIIPKESNLRKKWLSLISRKNFVPSI
SHRVCSVHFTGGKKTYMNNCPSLLPKQVKDNIKKPRITVNSSIGYKRKIDEIENEKNDVNFSFEETEPEKLKKEIIILKD
KLNIIKTKKKXMKNIIMNQNHTINQLKFTVDRFKHNQAHFKFYTGFESYNLFKVLLEYLEPAASKLIYWGSNTNIEKTTD
FNYNKKGRGRIMSSESELFLVLTRFRLGLLVEDMALRFDISSSHVSRIIVTWTDFLHSQMRMLPIWATKQTVKETMPKCF
KEKYESTRVILDCTELFIEMPTSFRSQSATFSNYKHKNTGKGLIGIAPNGAITFVSDLYCGRFSDKQITKDCGIYNLLEP
GDSVMADRGFDIADDLPENVSLNIPPFLNGKAQLSLEDENETRKIAAVRIHVERAxQRIKNYHILQTPFKLSMAPEINKT
WIVCCYLANFLPQLVSDK
>IS4EU-1_NV_tp#DNA/PIF-ISL2EU 108-1721 [Nematostella vectensis]
MVHCIVVGCASKSGKSRVSFHTIPKIVSNQGEEHEELTRERRRRWISAISRGDTETKRILDSERVCGLHFVTGKAAASWD
RYHIDWVPTLNLGKPQAKQPTVDKQKEEASLKAERAKERRKRSIERQQIEAAKKRKELEQTGLTVQNIDFAIASTSTEDV
SGLDAHSDEACGSTSYEYFDGDETEKGIQTVVHEMIDRSTSTEDFEVVSEGRRNRGMQTQEFNYLFKNSVYQAPDKDFFQ
SPDKVRFYTGLSSFDILMVVFEHVSPYVSRRSDLTSLNSFQEFIIVLMKLRLNVPFQDFAYRFEVSLTSVSRIFTSWIHA
MDSRLSCFIHWPAREQLWKTMPMCFQYTFGRKVTVIIDCFEVFIEKPTNLMARAQTFSSYKNHNTVKILIGITPQGTISF
VSEAWGGRTSDKFLTENCGILEKLIPGDTIIADRGFTISESVGLKQGKLVIPAFTKGKAQLHPVDVERSRGIANVWIHVE
RVIGLLRRKYTILEGTLPTKFLSCDQNGPTENQVPIIDRILRVCSALVNFCPSIVPFD
>Senkusha1_tp#DNA/PIF-Harbinger 713-1708 [Takifugu]
KKLFYLQNXHPSHYCVRNRHVPLLAMYIDGQADLRPDFRLSRSTVAKLIDVLRSPFDHGWGLEVEVLVXLFWLAGATSYR
VVSRXFSIPRSTVNDIVHXVSDKVLALKKCPIIFSKLDKLTTIAAGFQRPAGSPASAKVVGSIDGCHXRIKPPGADAQCY
FNRKLFYSIQLQAVCDHQXLFMDXFTGYPGSVHDSRVLKNSPLYVQGLYPPEGYCILGDGGYPCMSRPVALXTPXREXVR
HMMAARFNRHHAKARSVIERALGIMKTRWRAIFXKTLEVKPAFATKVIACCTILHNVCLRNGDSMEPSESQEKVVLLHPA
ADQTLDVIVTP
>Harbinger-2_PTrit_tp#DNA/PIF-Harbinger 100-1525 via genewise with MtPH-A6-4-Ia_tp, 1 intron (645:718), 1 frameshift, 1 stopcodon  [Puccinia triticina]
MLINVYHNRHFRLQNIRTPLPSISIIKTQVINPEYPNRPTDHPTITHTTMDNKLFATLAAAATSIMEMNNVLLSVAAAGV
ACKYLGSIWNTYAAYYGDGGQARYTRFLLDEVRPELFREITRMERSTFNNLVEELTMNGLLKNGRSVSVKEQVLIFLDIV
CYNNSMRQTAVKFRRGLFTVTRYFGIVLDSLVAIYPNYVKFDMDSCKQPEEIAQNPKYQPFKNALGALDGVFIPATVPAE
SQSPWRNRKHFIAQNVLAAVNFNFEFVYVLAGWEGSAHNTRVFNDATSKGLNIPQKKYFLADAGYGLXQGLMTPFRGTRY
HLKEXCGRTQASQQKELYNLRHASLRNIVERIFGCIKRKFSILQSAPEIELKKQVRLVYALCMLWNYIRSHESVNNLFDD
PEEDARTLLRTRMGEDESFDVTEEDSIMKHRRERLAKKLWDQYVAYKKSA
>Harbinger-1_SP_tp#DNA/PIF-Harbinger 441-1661 [Strongylocentrotus purpuratus]
MSEAFDNVGVMMLLHQKMMRDAEVATAYQLMLANPEEEEPPKKKRKHNWWFRPMLHPQLRAERGQYHTLMEELRENDRRK
FKNYTRVSPEMFDDLLVRLTPHLQKKDTHIRKAIPPGLKLSVFLRHLATGATYAELSYNFRVGKETIQKFVPDVARAIVD
EYAAEVISLPTTNEGWLEVAGDFEARWNLPHCLGAYDGKHIRLQKPNKSGSLYFNYKQFFSVVLMALVDSKYQFLWIDVG
GVGHQSDAQIYNNSELKECIEAGTLGIPDPAPLPHDDEEHPMPYFFVGDDAFAMRTYMMKPYGRRNMDQQQKIFNYRLSR
ARRVVENAFGILALRFQCFLGQMRQEPDTVRLLVEAAVMLHNLIRKRYQALDVRMLDQEDAQHNLIPGAWRTAAITVRKS
CDAALLL
>Harbinger-2_XT_p2#DNA/PIF-Harbinger 11734-6600 (2 introns) [Xenopus (silurana) tropicalis]
MVEEVVRQWDYIFGAQSCQLTAARRRDLWQQVADRVSAVSGVHRDHNTVYKRFSDLKRCIKKRFMAQRARAQKAGVGPVL
SSQFKPYERRLLDRAGVEVFGGLPGEYVDTDRRPQAQRQRPTVQERQQTRQQTPPEAEDQPQDVSGADERDPGTPDAAAN
VAAAGGSGQDRGQGLERPSAEGSVRNPRASQVVVAALRPALGNQRSHFLSQRRLLARMLGAQAALRVEVAGVRAELQALR
QEQAAQRQERQLSTGSG
>MtPH-A6-2-Ia_p2#DNA/PIF-Harbinger 2563-3608 via tfasty with MtPH-A6-1-Ia_p2, 1 frameshift and 1 stopcodon. [Medicago truncatula]
MEESAKRPRKCKGPDTCNWTLAMDEVLIDAYLHQHTLGNKNGNSLTSFAMDSIFQELKTHFPDKPITKDKIKDHMKNIKA
KFNPCYDVFKNGLSGFAWNAETNMWIAEDEVWESLIKVLFTSTEVFFFYQVYMISFFFFLCNTLFQFTKLxTKLVAAEWK
NKPIMFYDKLATLFGKDRATGDDEDTGFEMRAKKAASAKKNYGPTIEDIDHLVETNEVTLEGFEVDEEFDPNGSPKRPSI
RKPQDVPSSRNKKRARKVDEDETSMSEIAKTFKKMAEMFELNTAELVKQNKSSSAEDVWANLVEIGVEEASLPCVYMHLV
QHPEALKAFNGIPVDKRKEMLPYIVPNYP
>MtPH-A5-Ia_tp#DNA/PIF-Harbinger 1251-2564 via tfasty with Harbinger_tp, 2 stopcodons [Medicago truncatula]
MMCSNFLFLIMTHLMEIRERKKKIIAMFMIYMEMLNYFMLMTIVLCYLELSKRSKKRKRSWDFYERSLIREVHFRRIIYI
SDLACIENTRMDRAAFHKLCDMLQVIGGLLPTRHMCVEELVAMFLHILAHHVKNRLIRRQFVRSGETISRHFSNVLLAVL
KCHKELLKQPKPILEGNTDERWKYFKNCLGALDGTYIKVNVLEADKSRYRTRKGEIATNVLGVCSPDLQFIYVLPGWEGS
AADSRVLRDAISRPNGLKVPQGTIVxINIKIKYVLHSLWILTSGLFMIGYYYLCDAGYMNGEGFLTPYRGQRYHLSExRN
GLQASTPKEFFNMKHSSARNVIERCFGLLKGCWAILREKSFYPVKTQGRIIAACCLLHNHIRKEMTLDPLELNLGDDEFS
DEVMSGDMITTVEPSTTWSQWRDSFSLDIFNRWRGGNH
>MuDRAVI2_tp#DNA/MuLE-MuDR 3528-6152 [Vitis vinifera]
MSESIVPVICFCKGKMLRTETDVKYIGDQAVIVPLDVPVSSTYEHLLSMIYSRTGIDKKQFQLVLNCRYPLKRENRFQPC
PIWDDNSLSQMLKLVNTFGMDEIELYIEQVPVQPRVRGQLLGNFTQLLLGQNDNVEEFEYGCGPSSAPVAMTYECRADED
EDEKECESQEGDDQSERAEDVQHDGDGVFEFIDEENNNVNVVSSFLALHEAMESEQGRYVSVDGEGCDMSNNPDPEDPIE
FSPVQYHSAPSLQFENVENIGNAVSSDWTPWGNTNIGNSGGEFMVGQVFNSKADLQHAAKLYSISAHQEYVVVSSTTKLL
VLRCKKAKQSQCPWKLRAMVVKGTTSFAINKYNGPHKCVNPCLNRDHQQLDSNLIAAHIQGMIKAQFTLSVAAIQASIVE
KFGYQISYKKASKAKLKALTNLFGDFYKSYAELPHFFIALEQANPGCVVISKTFPGIMENTEIFQRVFWTFHPSIEGFKH
CRPVLSIDGTHLYGKYKGTLMIAMGCDGNNQLFPLAFALTEGENIDSWGWFLTCIRTRVTHRRGLCVISDRHPGIMAAMS
DVHLGWSEPYAYHRVCMRHLASNFMTRFKDKILKNLMCRAALATKIEKFNKHMNTIGRINAAAQQWLEAIPFEKWALSHD
GGRRYGIMTTNMSEVFNSVLKGARSLPITALVQLTFFRLNSYFVVRREQGANRLASNEEYTPYVDAKIKANVVKAGSHEI
VLYDHIQGQFHVKTNKGTKSSSTRGRTYRINLQEYACTCGKTLIYGFPCSHILAACHFRSVDFRPLVQHYYSTQSYYNTW
APLFHPIFNVYEWPPYDGPIIVPSESMKRASSGRPKSSRLHNEMDVREGKTSITCGLCKQSGHNRRSCQNSNRID
>MuDR-18_SBi_p1#DNA/MuLE-MuDR 1266-1991 Matches CUMULE_p2 [Sorghum bicolor]
MCSTIMAKQNLVKIRCSTSRLKKLCDDLSEKQKYFVRANGFGHFLNLSVFTVPIPLLEWVMRNFQVGVKEFQYGDKRIRF
TRAMIQQVFGFICGDTPVNLDNVSAELIEEARLVSVDYVINGRKPSIAEAVRLCLAENNEDAFMRSFMVVALGTLICPNT
QNSFDLNILSYLMRPAEIRNYDWATFAFDYIIQEVLRFQENIASHDVHIRNNTHCYGSCLPLLVVISFFYILARYFYVFF
T
>Mule1_Ei#DNA/MuLE-MuDR 196-1566 [Entamoeba invadens]
MNSIHIDYVINVDEKENYNYFKTPQVVVNQITEAFKEYSFETQARKMKEASVFTINGGAFSLFTTANRHTNSSNQFFKCV
YRGCKCRLVMSLSKQKSHVVQITFHHLHSHTFDYLPDNVKPFFTQEEMKRMKDRFKLGISPDNIKDEFGLPFTGKVMSSL
LHKDRKDNQLCQAKQLRDYFNSLSDWSTIIFTNRRGIFQGCVCINQTLCTSRDIGEVVVDDTCGTNEFGLPLVVAVNIDK
EKRSHCVFFALMTNRTTQSFVLVFSYVKKFYDLTVVICDRCLSQTNALLQVFKDVNLVFCTRHIRRNLITEFGKYHPLVN
LFNKVVFGKEGTEEQLIVAMKNQIIQDETSKIEENFYDDKNTELDGNHIMDCVKETLETLIECTNKSNIKNSSPTKCRMF
RELLDCAKCWLPSSMMTKTTNSTSNGIEGFFGWLKRKIEHKKCTLEQIAKSLVSCF
>OSMU4#DNA/MuLE-MuDR 1153-3640 Via genewise with MuDR_ZM_mudrA, 2 frameshifts and 1 intron (2001:2082) [Oryza sativa]
MDDGSELPMEGQEHSWWVNGVVSMDRMVEDLKSQVIWGSRQKPIFYGTDHRTCETIEISSNLVLISQFIDRFDTKVMNLL
VNIMDKSDTLDGSNTAIAAIDSGSVVNDDPPAPATHAAGPYNVVAPGAVGAYNVDAPSVVAHGGIDWDELNIQPLTVEGG
SCHVTFDEDEMFDMLGLGGSDIGADEATTSQFPPVDLEQGMTEAAIPVNDDVGVEPNRDWDRDDPIMNVDTIYPNMAVRQ
YAINEEFELGTEKSDPTRFRGFCTADGCQWRIVGRTQHDKTVRVQINAGKHDCSSTSRVLGRMASQAWVADRAAAIMRKK
PNCGAKELKTILEERYKVQIPYSTVWKGKERAIQKIWXSWDDSFDSLYNFKAEIELRCPGSRVEIGTKEVNGQVHFERFF
CCFEPCITGFLLGCRKYLSIDSTALNGKWNGHLAASNALDGHNWMYPMAFGFFDAETTDNWTWFMEQLAVCIGHVEDLAI
CTDACKGLENVVERVFPNCEERECFRHLMENLTKRKTGTVYGNLWPAARAFRSEIYDYHMDKVLSADPDVGDWLYKHHKI
LWARSKFSPKIKCDFITNNVAESWNAWIKEFKELQVDALADAIREKTAALWAKRRKIGEKLEGRNILPAIVTQLKAATRG
LANMRVMKGADDTAEVTELHNSVEVYRHVVYLDQQKCTCREWQLTGKPFSHALAAISKQRNPIMDDFVDPVFSVSCFRAA
YEGVIPCITDKSQWPTANKDFKLQPPVPKPRTVPRQRKNMIPSCLEKGKGKIRRQVKCPRCGGLGHRQSSQKCPLNGTKK
R
>MUMET1_tp#DNA/MuLE-MuDR 689-2700 (1 stopcodon) [Medicago truncatula]
VLLAYSFRVGFGVRVRFANKKEDGSVSSCRLVCCKEGLKRKEKRYAYEGKYTRADVRTNCPVRITLSRKNGKLVINDFEE
EHNHDLQNSETKHMLRSHRKITEVQAYEIDLANDSGLRQKSTFQLLSTQAGHRANVGFTEVDVRNYITARRKRSMAYGEI
GCLSKYFQRQLLENPSFFHAYQMDVEEHITNVFWCDAQMILDYGYFGDVVSLDTTYCTNYANRPLAFFSGFNHYRGSVIF
GAALMYDETSESFRWLFDTFLQAHNNKKPKTIFTDQDQAMARAVADVMPETHHGLCTWHLLQNGVKHLGNMMKGGSSLLS
DIKKCMYDIDIEANFEKLWFDMIHKFNIHDKSWIISTYELKKKWASCYMKGVLTLGMRSTQVSESLNAHFKSCMKPNVNI
LEFFNHFEIVVEEKRAKELSCVYESSHKLARLAYETAPILIQMGKTYTHTVFELFQDEFKLFLTLSVPIRHESDSLCEYV
ITKAKHEGSWRVxFNRVSNSITCSCRKFDTFGILCSHALKVFELNDVKVIPDNYILKRWTREARYGVVQDFRGKEVEGDP
NLSRNRMFRQVVSKFIKAATEASPKEEWLKFLDNGVDDMFKKIIELRTQAMDNNGDNGARPEVVSLDFMQAKGFRVRPGS
KRIKRHKSCLEKQHSRATSRRAPPKEKSSQVYELLFKVLVLVLLVLVTAIILHVS
>MuDR-18_SBi#DNA/MuLE-MuDR-18_SBi_tp#DNA/MuLE-MuDR 18370-20670 R [Sorghum bicolor]
MMFYFNLFYRAGETFSTFKIGGFQTLFQAIIERLEEEALLDTEEEIVSEDEEIFADKDVVPEDEEYFFPSAEELNQAKAP
EIGMLFASVKEAQKFVNVYGQLVGFSVIKGSNYMNKKIMLQCNRSRKPKQKNVVAGQNKRKRLLVDRTDCPMRVMIKLHQ
GSWEITGVDLKHNHPMVCSPSLTKFFLKHRYMTDIEKQLSRTLQESRIKPRKIMAIFRKMSGSLKCMHFLKDDINNLKQQ
DRRKIMKNTDMDRTIEYVKKIQIRQPGFFYTMNVDENNVVKSIFWTDVKARLNYSLYGEYVSFDTTYSTNKYNMPFAPIV
GVNGHGRTIVFGWALLEDQKAETFKWLLTTFFEVMGGKKPDIIMTDQDATMKKAIRELIPEVVHRNCFWHITRNAREHLG
TLINKREGFAKDLEYLIYDSFTEEEFETGWQEMLEKHDLQGNKHLKSMYESRNMWVPVFLKTFFCPFTKSTGRSESTNSN
FKDYVHPKDSIEKFLEQYELFEEEQKVHEDKDRYETTVQKPKLQTMKPIEKHAANIYTRNIYLKFLEQLQFSDAYTVEEI
EKDKSYKVVKLMKYTGQEFDRDTFVVQVKREENMFECICAKYKRDGILCSHVLRLFTQLGIHEIPKNYIKERWRSSYFEE
AMKKQKMMTVDSKGNQNGQEAMLFAIMMTRSASICESMSKDFRKSQKYMDELEKLVEKIENEFAAEQQLESAGSTSVYKD
PVVQATTSVRKGQRLLRPAEKKKKTATTKKKKTVTKKCQEQIVMSS
>MuDR-4_ZM#DNA/MuLE-MuDR 897-3199  4 introns via genewise with MuDR-5_OS [Zea mays]
DPTIVPTVGMTFKDVDDAYKFYKRYAYEVGFPLKKYREKTFSKWINCSREGKSAPKSNDTPRMRNRSSGRTQCKAGIKLK
KIYDDENKMVVAAKIELVNLEHNHEFITDEAEKQHLRCNKIRDAEFINFVDAMHDSRVPQHCIVDFISEMHDGPENVPVT
AQDLKNMRAARRRENCANDVAKLLAFFRECKKQNPQFFCDFQLDNDGKIVSIFWSHASMQGEYADYGDAVTFDTTHKTNI
YDKPLGMFVGANSHLQCTVFGFVLLGDETVHTFEWAFNSFKTCMGCEGPRVMLTDQDPAMPIALRTVFPKTVHRLCLWHV
QNRFMPFLNEIYARFAVKDFKTTFQSIIHHPLTPHEFECAWEMMLEEFNLHEDMTLRKLYEIRKEWIPAFFKNDFCGVMV
STQRSESMNRLVKQSHVDANTPLHEFAKQMMKMLHSRKMKESKEALVSKVCRAWTLYRFEVRVSRAYTRAVMNRFEESMK
YATAYKILKDPDGCDNEWIVQHTKRSNKIVWGQHQFKITADIEAGEYTCECKQWEHTGLLCVHLLRAFMHLQVEKIPSKY
ILQRYTVSSRKDVPFERIDKSFRGKDGVTKSYRQKMLLTKTMKVVRQACMSKAGYDKAMDVLDELDVVLSRLEPDIGCNE
ST
>MuDR-4_TV#DNA/MuLE-MuDR 275-1744 [Trichomonas vaginalis]
MISVDLEELIAFGIKQEVKGGVPYRRRTGSPKQYVTYSCSYPLCKAKFRVEEQNGVFTISKVNEEHCHHIGVEMGSHYAS
KFYQKWIELYIKNGGKQFLAQKAFFDKFGIDTNNKETMKLFAQSTDALKHKFYRLDEIIAQRLSNDPYTSLEAFLNNLQE
ECPDDLVQFDYNGDFSEFTIIYAPFAAKELVHSIDNPLHVDSTHSLIKGKIQLFAVTMKTSQNTIFPFCYFLVNPQTSEK
IQECLVKFCEFAHLDPQHWSADCALNIARAIEDGFPLAQLSWCAVHVLRACAKVGSYFDNPQNFENFYLAMDFLTLRADA
TNAEKLAEESDETYEFLTTMLEEEEPRALKYFDKQWRRTKEHWMMLYRGEGDSTNNIAESHFHQLKQTFFLGKKNERIDD
IVITLITVVIPNAIIKVQVANVLNEERAVRILTRAGNQIVEQRASKHDECLKLIQHILEIVESRRIEPNVLIPSLKAILN
LAQRSLKEE
>MuDR-5_SBi#DNA/MuLE-MuDR 1694-5277 via genewise with MuDR-7_ZM#DNA/MuLE-MuDR, 4 introns (2203:2622, 3006:3389, 3854:4409, 4682:4799) [Sorghum bicolor]
PENISEDIVPKVGMQFRTVDDAYGFYAHYAEVVGFGIKKYREKRGCKWLNCVKEGKCKFHKEGGKRVRKKTTKRTGCLAG
LKLKKVYGDDRKLWCVVIELANLNHNHNFLPSPSATKNFHCNKALDPTYREFIGSMHDSRVPSHCVMDMMAEMHDGPQNV
PLTRMDIKNMKAARAREAQMDDVAKLMAFFTHCKQQNPQFYCDFQLDKDGKIVSVFWSNASMQGEYADFGDAVTFDTTHK
TNLYDKPLAMFVGANHHLQCTVFGIALLGDETTETFEWVFNTFKTCMGGEPPRCILTDQDPAMPAAIKVVFPGAIHRLCL
WHVINKFQPLLNELYARFEKRHFKEKFQSVIHHPLTPGEFETAWSMLLSEFELESDQTLQSLYDIRHDWVPCFFKDVYCG
TMSSTQRSESVNYIMKKCHVDANTPLHLFAKQMMKFIHSRKMDEARETYGCTSEILTNSSWSFEIRLARVYTRAVFGRFE
ESMKAATAFRIVEDPDRGRHCWLVRHTSTSGKIVWGQHQFQVTVNEATGLLTCECKQWEHTRMFxFxHLLRAFMHVQLEK
IPHQYVPKRLCRNARKDLPFDRADVRMKGIDGETRAYRQRLLLTKAMXLVRYACMSKPGFRRAMEXLDELIGXIADLEPD
IGTADLDXDDVDVSTSLHFMILCTHCLTCITAEIFGFWYXLSNRFMLLQNXVQGLRWTMMLV
>MuDR-8_VV#DNA/MuLE-MuDR 3687-6269 [Vitis vinifera]
MTDSTVEVLCYWNGTILRTETDLRYIGNNVEIEPIDVPIHTTFVELLKMIYDIIGVDRDYQLVLKCRHPTEMNKFQPLVV
RNDRTVARMLVVPSKYGMSSVQLFIEQTPNHYHLSNEMGHLTRLSTGDTDVDDENERDEEDDRDDAIDTDEIHLPNDDEN
CCQRENIDLVMVQQVVECESTRFVNLEVGDRSNNPEVEFEVENTSLVASPHGTQFNISNDNLEETFAPVSYHMPPTPQFL
NMDEAINCVVSDWTPWKKPTLGNVDGELSIGQIFSSKSDLQHAVKMFSIKSHQEFTVYRSNASVLVLKCKKAPECQWRLR
AMTVKDTGMFRITKYKGPHTCVNPCINQDHSQLDSSFVSEYIETLVKAEMTITVAAIQAVVAEQFGYQISYQKAMKAKRK
AMTRLFGDWYKSYAELPRFFLALEQSNPGCIMYSKMVPGNNPNEEIFQRVFWAFAPSIKGFTHCRPVLSIDGTHLYGKYK
GTLLIAMGCDGNNQLFPLAFAITEGENTDSWSWFLACIRVGVTQRKGLCLISDRHPGIIAAXNETYSGWTEPDAYHRFCM
RHLASNFNTKFKDKTLKDLMCRAAMESKVKKFISHMDTIGRINAEARNWLEQIPLEKWALSHDGGRRYGIMTTNMSEVFN
GVLKGARNLPITALVQLTFYRVNSYFTVRREHGASRLASGEEFTPHIDAKIKAKVVKAGSHEVLLYDHVAGRFHVKTRHS
VGSSNRKPRTYHVTLQTGSCTCNKTLLLGFPCSHILAACHCRAIDFRQFVQGYYTTRAYLSTWAPLFYPIFDELEWPQYN
GPIIVPSDSMKRLTSGRPKSSRLHNEMDARETRTPQTCGLCKQSGHNRRSCPNRETNDRRS
>MuDR-6_SBi_p3#DNA/MuLE-MuDR 7406-8302 R Probably spliced into from _p2 [Sorghum bicolor]
FRKKSPYPIPVPMTGYTPSPLSGQDEDPVQPSLNDWMDSQGTSSRHPDGTHAVSIEVILSKPTCKFQTCCTMCIHMLHCT
FPNVSFSPLHILHYLLQSLPEEYQVLLAEHNSLLEKDFDELANTMKEQGKAIMAKRGAELASKFIHLNKRLNDVADMSNK
MSHLKKPTNDNVNMHPPPDPTGSAAVSPKKPSNPLESTTHASTSSAPIAPEDSTKGPFPSPPPIAPDVSTKGPVPSSPPI
PPADSTKYAVPSPPLILPDESTKGPIPSPLAIPPKDITKDPVPCKPSSPSAIYRSVYR
>Vandal9_tp#DNA/MuLE-MuDR 546-4188 Via genewise with Vandal16_tp, 1 frameshift, 5 introns (1030:1126, 1761:1922, 2103:2258, 3127:3228, 4078:4120) (Vandal10_tp, Vandal11_tp, Vandal12_tp  very similar) [Arabidopsis]
MAFVVRLVPGEWKKDENGYFEHVSHADGFALGVRLREQDGFAKVVMAVKEKLALGAEDDIELTYQWPQWMMGPDWRRANP
IDILDDEDMTLFMAIRADLDEVHPRVKIIRGGNSRNVNSYRSNLDIGGLTLEEISDKYWNSAETRAVWGTALTRMLLRNI
SAHILSPITYLYATIYLIQVTVMDWQPWERTTAWAYRKAMTNETLMGGGGYHxDNVEITAGTSGVPLTDTEPDSIPISKG
KEKVTDDDERERDRLFEMWRTQQQEEMWREMCATQMTLGATQIDATNVGDTGKTARALNFGSGDIFKGNPREDLQLTLAR
AETQEVCTQVVALSSSDSTFGMPTSLSTSVSFSSDDLMDVTDSSNNNSSSCIDKGKGIMIDERITTKEIGAGSTNTRVSE
VLRNELMVKDTPVPTVLYDRDAPPYFDDPEKEDALHRALKYADNEGDDIYIGRIFKSKEDCATKLAIHAIHWKFHFIYAK
SGPNIVAAVCVSDTCPWRVYATKLPDSDWFEVRSTTQTHTCSVDARGDFHKQASTVVIGKLMRTKYIGVGRGPRANELRR
MLRQEFSLNVSYWKAWRARXIAMDNALGSVMGSYALIQPYFKCLLETNPNSLVAMETEKDNSGVERFKYLFFALDACVQG
YAYMRKVIVIDGTHLRGRYGGCLVAASAQDANFQVFPIAFGIVNSKNDEAWTWFMTKLTEALPDDPELVFASDRHNSITP
ASVYPMSSHAACVVHLKRNIEAYFKYEQVGSLVSSAARAYRLTDFNRIFVEVRAKHGPCADYLEGIGFEHWTRSHFVGNM
YNVMTSNIVESLNNMLTMARDYPIISILESIRTTLVTLFALRRQAARSEDNILSSKVHDMLIENYEKGAGCVVLKIGDGL
YEVREKRGSTFAVNLWERTCTCREFQLLTIPCSHAISAAIEEGLRVDTMVGVHHXDPRLRLSYQALIIPVPDTETLTPSP
NDVGGGKLAPPYVRRPPGRPRKRRLFSKGEFKCTYLSKLIKYLYASRKRCSQCKLLGHNRVTCNGPV
>P-7_HM#DNA/P 223-2781  [Hydra magnipapillata]
MVNKCVAYGCKTGYNSSLEDKKIASFHFPLKNQQLLNYWVHFVNRTDWVPSPNSVLCEKHFNEKFIIRGKKCKLNWNLDP
IPEIFSSDCLKRPSTLPSPIALRRPPKSRIFQEDELSSFSENDKVTEWTMLSIKHSPEGFQFKKHLNCVVYYNLIFDPIT
FFPSILESIKIDYCLCVALQYKGNNVPLPPWLSKGRNSKLTSLSMLENLAAYIKNTASSNRNILLDEINSRTYYKAKGQP
QYSADMIRHALLLRYTSKQAYEILLESFPLPSISLLNKIKQGGVDAIKAVKTLREKGSIHEDVILIVDEFYLQKQAQYCS
GIYVGADDTGTLYKGVVAFMIVSLKKSIPFIIKAIPEVNISGKWLSDQISDSISSLSLSGFKIRGVVTDNHKSNVSAFSL
LRSKFGNQSNFFINHPDSPNTKIYLFYDSVHLVKNIRNNLLHCKKFVFPSFTFNIKDDSNNCPAGYITWGDFHHLHSKDE
KLQGNLRKAPKISYQSLHPGNKKQNVSLALSIFDETTIAGFKSYFPERKDISGFLTIFHKWWTISNSKERFSPNKLGNAI
ILNDGKTTFFRQLANWIELWQKSPYFTLSQQTSSALITTLRSQAMLIDDLIEEGYLYVLTSRLQSDPIERRFSQYRQMSG
GRFLVSLLEVQHSEIILACRSLIKENINFWDEDLKNNHNNPINNELLAILDLNSNEISESTLSPETEEVATTIAGYIAKK
LIKRSKCNYCKPLLATDTSNIIICPYLQILSRGGLTVPSLSLKDFTCGCFAVLDNLSDLITKQGANVKDVSSFVLSKYFP
TVCFTCDIHKKWGFNFASKIIINVFFNNKQNLINATVRKDAVKSFKSRQREK
>Galileo_DB#DNA/P 1349-4087 [Drosophila buzzatii]
MAQISVVNEKSVGVKKXLEKCLGXSGAKCVIETCGASYRQSSVNFPVKLFSFPSKEIEFNKWVKTCHLPSNFNRKKAKIC
DRHFERKYIGKRKLKANAVPTLNLCDPNFFSNSADFNDDFRLVDNRGAEHQNENVPNECDDELIENLLIFDDNSKKEFWQ
NLAVDRTPYCLNCIKREQNEVYYRKKYYEIGLDLKKVQERYTKLKRRFISFKRVSNYRGVSFRVRRAKKTVNVFTTINSL
AHVSEQSKVLCKMLLKNTNFYNSAERVLSQNINFYSARAYEYLRDVLHLKLPSKKSLNRWAIFKNLTPGSNPELLENLQG
IVEKMSDKGKYAVLVFDEVKIKKGLQYNSYLDEIQGFENDGEKRTKFLGQQVCVFLIRGLFENWKYVLSYTVSANGIRHS
DLKSKVEANIGLSQALGLNVKAVVCDQGSNNRAVFDRWGIDINKPSFHVNDKEIFAVFDAPHLVKSLRNILLRHNISTTQ
GTVSXNIIRKLYEIESKNLTRLCPKLTSKHVSPNCFEKMKVKYATQVFSHSVAAAIRTVIDSGGFSDCKDSAVATAIFIE
KINRLFDCLNSHVLFDSNPYRCALTRNNNVHEYLQEMRDYFHDLQYPQKVYCITGMIITISSVIALAENIWNDNNDLFFV
ATSKLNQDPLENLFYLIRSRGATNTNPTIFEFNSIISKMLSMKVLTSASISGNCILDEDSMLANIIKDSGSTLSVFHSQC
EIHSSVYEEPSDPDFEIELSLDSTIVNIQNAFNENALRYFAGYLLHKLLQRTDCEVCTNLLKGSDEMQCSSEYLILNKNY
NYIHQYLKLKAPSDNFYNIIKIHFDIFQKIFDKKPFIAKLKEKIILHCMRATAKSTLHSDWFSPSHPCFDHRKFMLNQFV
LILIRKNCKWLTDSIVSKSSNLSKSKLKMIRE
>P-9_HM#DNA/P 144-2630  [Hydra magnipapillata]
MGRKCCVTNCNGNYDQSSKEKTFRLPRIPEERKRWLAVIPRDNIPDKKDTVVCERHWPVGYVLTKDYGKERPRDPPSVFT
CVKSSLIPSPSGCLRTTLRSHAESRNVQPDELSAFNLKDVIKSFNDLKTNIESYNFNGFDILFNTKTDNQVLIQSLEFFH
NTGVPLFILKINNNFQYEAFHCGVKCVIKTLSQNRITILNRWSHIVEAVRFLNAYEISSKKNIIEQQLFSMGDKLVTDKK
YSVETMIRAFEYFSMSRATYNRLREDFQLPSITTLTRLTSKVKSVHEDIFLQKVFSNLSDIRHKNCILLLDEVYVKTMLQ
YHGGTVFGKAVNNPNVLANTVLSFMVVTLFGGPKFLCKMLPVREIDSNFLFEQTNFLLSAIKAAGGNVVCIVCDGNRVNQ
AFFKKFETDGVPWRTKDNIYLLYDFVHLLKNIRNNWITEKTQELEFYVNKEKKVAKWSHIVALHKLESNQMIKMSKLTDV
AVFPKPIERQKVSTCLKVFCEETVCALKCHPDLKNVDDTISFLSIIIEFWRIVNVHSPYADIRMRDLNRAAIFSSGDFNL
QKLLEFGNLAKQMCSSQKVRCKSFTKDTSKSLYHTCNGLVELSKFLLSTNHKYVLLGTFTTDPLEKQFGKLRQGSGGTYF
ITVQQILEKVGIIKTKLLLQLDNNGDSLDFTTSGHSCERCGFYMNEEKCLIFDNLPELENILSIDVKMSLIYIAGYVVRN
DEDSDDSYFYYEKFRYFTDEINRGGLTVPGDFVCQWVIYCYIMFREVADNTCISSLCNLMMLISESYQLNMNRKHGVILS
NIFFKNYCSLYSPRSEKEPKQKILKLSVK
>P-13_HM#DNA/P 100-2806 via tfasty with P1_Cis_tp, 1 frameshift.  [Hydra magnipapillata]
MVISCSAYGCVNRFNKGVAISFHKFPLNNSELCQKWVVATKRDSFVPTKYSYICSVHFHKEDYNYENANKPRLKANVVPS
IFNFPAKMHSKKPIKRKYVSRNVTETFETINEKKISLSLPCSSKNHILTSVDFTIENPNNKVDSPSKVKLKRKIKTLKQK
LRRKELKINTMTEIIKKLENDKLISADTAQFLDNSFSGLVCDLFKSELVNKCKDPRGHRYSEEVKKFALTLHFYSPRAYT
FVSSLFALPCISSLSNWSSSIDCSPGFFKDVFSYLQQKGLEDVTYKDCALIFDSMHIKSGLVYNPSNGNYEGFSDYGNNI
SAFDPNSIATEALVFMLVGLRGHWKCPIGYVLCEKISTTNLVCLITNAVNLCVQHGIDVHSVTCDGVFSNFSAMKSLGCS
FDKAENMKTFFNIESYNKNIYFIPDPCHMLKLARNALCDLGVFIDSQKRFVKWEHITILQNLQEDIGLKFANKLGNSHIN
FHRHKMNVKIAAQTLSNSVADAIEFLMLSGHPSFHDAQGTLDFIRTINQLFDLLNSRSPFGKGLKKPLFLNDKIHWFSVI
EKTIKYLASLTDKDGTKILKHRRKTFAIGFIVAATSIQNMSINLLSRSECSFKYVLTYKVSQDHLELLFACIRGKNGFNN
NPNIIQLKSSFKKILLRNFLIGSKHANCLTFEKNSAGSIFSLKWSKTRSPMIETELKDEDKNIIANLSNSLEKISTLIYK
QAILGYIAGYIVKTLKKKITCCICAEALNQPDNLVRDHDYTVFYKSSSLSFINLKNLGGLNIPSVSVIKIIEKCEKIFRV
FVIGINSTLATYSQKNLKSLMVYKINQELACEKMFPELNEHDLDHEILTEDMHSSQLLKKIIDKYLSIRLFRYGKQYTND
ILHKHKIGLRQQFNKIILFKGI
>P-10_HM#DNA/P 109-2628  [Hydra magnipapillata]
MGKKCCIYGCTTNYLSAKKKSDNLKISVYRFPKNEDEKQMWIKVIPNANLKVTNDTVVCELHWPINFEKQQVRGKFRPKF
PPSVWPGIPSCQIPTQPPPLRSTNSASSCIRNFAQDELSAFLEKDRVTFAEMKEILLCNERDLGVPSVCFMINSIIHLQS
QAYSNGVPYFLIKIRDDLHFETYHYGVKIKIPTISKNRVSKINAWSILEEVLRYLKSLIPGRKEIVIQEHLASMGTQCVG
NKIYSKEIIIRSFQYFATSRSLYNQLRTDYQLPSVRTLTRITSKVSKLNEKLFFTNIFQSIEEKQKICLLLHDEVYVKKM
LLYHGGTLFGKAMDDSTSLAKTVLGLMVNCLFGGPSFISKMIPISKLNSQFLFEQISITIQSIKESSGQVKAIICDGNRI
NQAFFKIFEFTVPSKPWLTNDGVFLIFDYVHLLKNIRNNWLTEKTGQLIFYDKGVQKVAQWDHLKKLYELESKNLVKLSN
LNEVSIFPKPIERQSVSTCLRIFCDKTYHALINHPGLQHIKERQDTADFINIVVSWWKVLNVKGTGADVRFNDELQAVIR
DPNDNRLENILDFGNMALKMAGKQGKRKKQLTCDTAQSIYHTCNGVVELCRSLLNSSHQYVILSEFSTDPLEKEFSKLRQ
GSGGTYFITVQQVIEKLNISRAKLLLSLNNPAVDICLDTTHSCPNCGFLLDESSAEIFDNLPNLESFISSDTNMALIYIS
GYLTRKDNELSENELLEKTTFYHQKFGQYIDSIDRGGLNIPTDNTCQWVIFSFIIFNTIKDKVCRVSLSNILMMISEFYN
FEMHRHHGNILSNIFLNNLCKLSTPRSNKEPAQKILKLS
>Novosib-4_CR#DNA/Novosib [Chlamydomonas reinhardtii]
MTSLEAFFPDSSPCNYCLVCQHVIQIGRKGIRVVNLETYACCGLSDDVLAVRKEQGVRAPLAAVHGACYISQLQPRLRVL
REQAAAVPRTRAAVKSLPPKPARRAPAGAGQKLGQLQNETAHITGVLPSASQRRTGGGVTHMETSPQESPGRGGVAAPGA
CTSSSGHTGVSWDNSKQAYRARSSCKLSGVSGQPRHLGHYPTSHDAAAAVNLYHEVLAWCLTWGVEVEPPPNAVPAGVAL
GRAEEAYVRSCALNAELDFWRAKEAALTAQLAEERRSSCADYLTACQLVPELASFVTTIATGGVLPGDLVVEYAMDAVTN
AAKLREGGPAANGVRWRSRIKVVAAAAAAQCSGEATLNVLRGDVKDPGLPFPSTSTNRRTMGEDGVVPDATVGVLPTGIR
KFVARCHVAGRPNADACMGTDGVDIPALLEKEIYPSGVRFAGDACLGDSIGVAALAQKEREYNSLVSRLDSSAARVSDAA
GSHASVQHVAAWVQREVLPRARTSLREAQVASEAQDARFQRTNGGAMEAGEQQRLKQQQVVHKCASLQRIERAQTVVSLA
EGLVRGAQRMHDIQLVSVTVGVLSPEGRITVALTPAGSDAEAACAEAVVLLARDMRAALPQLYDVLRHAATSMVVAFLTS
PDSSVSELVARMYVGGKAGEQTMRRLIADVAVALATEAKAQQQERRLAEKEQRRQEEERLQQLLAKAAPQPAVLPAAQQA
AALPVAAAAAEEEPPLPPAGSLLMVVTDGEHFSLTNAAGGGAHSSNLAQLNRECQKQCAAAALVRKRTARGQEEVQLALW
RDFVQHVPLNPPRQVLPRGAATSAAPAGSIAKMPHADALLGVVAAHNKHQAAVKAAVAAAAAAAAAAAKAPAVSAAATAT
EVPPPVQQVPPPAPTQAAHPAAPARPKRTAVAPARYNSGETAVPAKQAKTSTTAVAPLALPAAAPATAADPLYQQLGAFC
MVCGSKHSSDSNDMLFCDGPRCSNESRYAGWHQKCLTPAVTMVPQGDWFCPRCVTAESRCKEQGHRSGAQAPTPRQQQAG
ARLLPAALPASRLTPGLQPLVSDLYSSAGRLAGSIERRADIYAISPQQVQEHGEKVKDIEAHVPWRQVERPVQQLARELE
AHSQAAQQPGSMDGVSPQVAAGYHAYMAAALRPQLPWGADGGAGVAEPPPAAGAAVAVRGGGGTAAATATGAATSTAFRA
PGLANGCSGCVDAAADRKDTHASRAASRAAAAAASDSVLDAEAAGVLQLVRQLPVREGTAVVSRLVWRSQYLARHALLLG
DRVSTGADGPSFPFASGMAEAEAYWVYRLTHGMMPAGLAPATAEQIVQQAVDQARLDSAVLVCKEAGRDFTRQFHYTAEG
IACMVVDEPHKLKTAKPQDNPCCFLAKLDNLASMQRVATHGRLQPGTAAASTALATATPLSSAAALAAAAARVAAPCSPQ
LSPSEAEVAAAAAACKYGESCLDKGVLLEVAAELQREYQTATLVTRAAKYPGLNPSHLIAILRGETDAQSVNCAQYWIGC
APLQEALRERGFVREAVVMRTLMEAFEAFDECGLEPVERALRITRRTIMLQRMLGNTLFTARVCRGGAQPTLPQYVDGFT
LQNVCSWLINGDSRLEVVERLPAERRSELCERALSSDCCELFFSLLTTLCGGRPALRVIQGAMTRITFLLGLRQQTRTAR
GFSMRRRRTRGAYKEHELMVAAALLDPETVSAGRVGISKWNSALKIKNRCLKIKRQKSICKTAGARANGKMGHTRQVMFN
KPKLATGVHGAARK
>Vandal20_p4#DNA/MuLE-MuDR 12466-8462 (reverse) from RepBase 10 exons [Arabidopsis]
MTKKKSSKSKTISPPVVMKQEPKRRNSRADAQRDTHAKSPAKSPASARGLRDESPISPAPAKIPAKSGGLRNESKQGDER
CRDSEFTNPSLPCRLLHPSEFPDGGRLNIHSKPEYLGTLVELLEGSEAWDELIASQFKKLFELPVARCHHSAKLIHGMLT
RQLLTKNKHELWTVYGGFPLRFSIREFQMTTGLICDKLPSESKVEDYHDPAYLNRKQHRVTRDFVEMLHDIEFFLSYPWG
RVSFESTMERFGPSAGEEDPIAELKARLSQKSSVCYGFPLALQLLVLKSVPALCSRIKDTVDFRNFIQKLFVDLGRTILL
RESDVLDAEQTANLSVEYTLYQSETVKGDLSWPDEKEDEGVELIISLIKQKHHFKAETWPIHSIQCSSKDAPAADAEYVG
VALDTDDVEFVGTRTVGPEDKCEPSKAVKRAKKEYYPIRRKPFTRSSKKEGLNVEPLPTQDKAATPVGKTVHKKTAKQDA
TLIKQAPLLSLLLMEKATETAAGAPETPKSKSKKKKETKQPVTRKRKREEVTSLSSGSSSSGLNHGPAVDTDIGVDGGGT
VNLEGSVDPWELYGSTKNISEPQEMGRESPTSPVPTATQDKPMDTKPIKTMEEPLDLGNRAGSPRQTPCSPVTPIAQVIP
DSSIVAVSPAYFEKERTNIRQPVPGKRVPIRSCFLDTTKYSVDPRISALFKSRTKEPAYTPLPKLDDGEFQTFKRLLEDD
PQSEYTICTGHTVTNNHFLDIATKETWVNTEHMQLITGMLMKRRGKAYSQRRVAIIDTWFAMLLSTHYEDFQKCEDKAKY
EWGKTIKGYITGKSTGIHMKSEFLKHVDVVYVPMNWGCSHWVGLVINLKQQSIDVLDSFISPTPEEAVEFQMTPIVSSCP
TLTTEMTTEPFSCTRVTGLYDNKGDGDCGPVACKFLEMHAHGMDYTDMTALTDEVVIRIQKVYAMDTYAAFVEWEDEY
>Vandal14_pt#DNA/MuLE-MuDR 8021-7220 (reverse) 1 intron; from repbase [Arabidopsis]
MAVIRDIDFGACRTLSAIELREIVEFKTVVPKMVMDIFINSIRINWCANNIIEKHQAVSFIDSTFVVELSKHYPKFVKSA
DKGMYGFDHDLLECTPTGSAVVYIPFLIDLQHWVGLCVDMSARIISVLDCYTGLWRETKLKKVLLPLAEMLPYLFRFAIK
MAGEKKLRLKSLAVHRENDIPQADSVKYSGVMAARLIEAHANGGIQACKEVKHADVVTAANKYFIAGFELANGIV
>Vandal21_tp#DNA/MuLE-MuDR 730-3126 [Arabidopsis]
MKENVIIYFKFQGRMYNVMMKTLGEKITLSMLEDRIMTKLGLDANKVKLHMRYNPRLFGVEEEMNVCDDEDVFVYVTSAK
NNRRSVLVVEEISKPPEPEQLPEQLSRVGKSSVGKNYTELNSEEDEMRVDDGALIVLLEEEQGTQHQLEAIVEDHGTQHQ
LEAIVEDHGTQEDETRYDESMDNSDRGEQYVESPPAVEPGMFKKEWEDGIGLTLRQEFPNKAALHEVVDRAAFANSFGYV
IKKSDKERYVLKCAKESCSWRLRASNISNTDIFSIRRYNKMHSCTRLSKGSSRLRKRKGNPQLVAALLHDHFPGQLETPV
PRIIMELVQTKLGVKVSYSTALRGKYHAIYDLKGSPEESYKDINCYLYMLKKVNDGTVTYLKLDENDKFQYVFVALGASI
EGFRVMRKVLIVDATHLKNGYGGVLVFASAQDPNRHHYIIAFAVLDGENDASWEWFFEKLKTVVPDTSELVFMTDRNASL
IKAIRNVYTAAHHGYCIWHLSQNVKGHATHTNRDVLAWKFQELSRVYVVADFNRAYDGFKLRYPKATKYLEDTTVKEKWA
RCCFPGERYNLDTSNCVESLNNVFKNARKYSLIPMLDAIIKKISVWFNEHRMEAASGSLENKMVPLVENYLHDLWVFAEK
LKVVELNSFEREYVVTCDKGIDYTVSLLLKTCSCKVFDIQKYPCIHALAAFINIMDDEDRRRGLELHDLVTKYYWAELWA
LAYYRTIYLVPDRSQWEVPDEVKALKIVPLSKKPKKGRKKMLRFPSTGEKRPKRQRTQNKRRPRQSCQWLLFGNTPI
>Rehavkus-2_TC#DNA/MuLE-NOF 657-1973 [Tribolium castaneum]
TKTFSKILAKAILQIKRAGKTTVTFNSKFIRLRKVLKIYIETLEGAIPLVNSKNKDSMLVWKGEENIFPKYTNKNEDKLY
SAVPKEADDPLSLLEKTHKNSKEVETTNDDNDETMKDEEDRAVENWKGEGATKPKRPRRSYLENQKEWEFMELSARTKTI
PISLIKNGNCSTLRTITINKKKFMFTNTCGFDALVQILSSCYCDCPAFREGVVDDNFLAELLQNLVKGKISRHSYILRAK
ILSQIFDEVLRPDGLIEIPCVCTQQLLIDRLATNNFLEWSKKEITVCSKCGYNETRNYATIMLSDNNLVAELVTKTMEKT
CFCPKCDEKYLNVKSNLNENYIFIDWASVSLTNTNRSVQLCQIPANIALTHKNLNYKLQGVVEIIGEGILASDVGHFIAY
CKRPNEKWEIYDDLQDKVNTNCPPEKVLRGCALLVYRCL
>MuDR-1_DK#DNA/MuLE-NOF 3890-7106 via tfasty with MuDR-1_DF, 2 frameshifts. [Drosophila kikkawai]
MPAKSQVDVPALVDALCSVNIFTETGTLKPRGDNVWIEASNYLQGTISGQTLNFYARINRNNIITVVKERRGMQLDSTAN
NTINTTLNNTAPEEDPEYLIDQXSENGPLPXLYFNLEXDEETWRSIAPKANXKKXLRSXNYLQPNWTDTXAMLVYKKIPX
PCAFNFKKAKIXEKVDNIWLQIRGYCNECSSVLKGHCXVEPDENCGISINISVPDTRGIPHNKKRRCTGSRRVEIGQELI
LKKAALWRKEATTSMNNDDPEPSFIPKLPTLRKLREEATNRHLGINKDRDPISSLYLKKYEGELAGCILDIGLDEFFCIY
CTGAQIKAYTSRIKXVRXISVDATGSVVLPILKPSGETSYVFLYQIVMEGDDXIFPVFQMLSAKHDTASIQFWLSRFIQK
TGHFPLEVVSDFSLALLNGISLGFNECRLNRYIXTTCFKNISSKXXNELPPCYIRLDIAHLIKMICRKNIFKGKLPNVKD
FYIRCIGVATTCDTKESFSEIIKSMLIVALSQSSGEDETGEYLPSYWNEKYLLTRIANFSALDHEENIDDNYVPEENEEI
DEDIIVFIANIQRCAEEEAVKCSSVHCRPNPYYLPELMPPLIKLCRYFVLWTNVMKDKFCSMYDVGSSALVEAYFKDLKN
TDMSIFHRPVRADKFVVQHIRCIEAVCKLERAATKRKTLKIPGFIQETSTSKKSRNEREGFLEEMLNESEVDHLLQEENW
KVKNKSFKSSNSYVDEDDQNKNISQTVDLSKPKKEMELIENSKPRGKYLRKCPNVELIYNRPHRRKRDEILRNGGVLGPV
RIGNQLYQFKNTCPFDSMVEILTTAYIDNFFYKDQLDSYPPDNLXIELVKKYAVEGVSSSLYSDRGLVLKSFFNEKHQVV
QRDANIGTFIDQSLNGIPSSSTHKSHKTRESNDCENHVSLHHRLELQTYAEEXDELGLNDVLLSFVRKFFEKTEETCNKC
GGQQILEREPGPHVIXDIEFAMEFHRTKYLGTPGTASLQQLPSEILIQDKRYILSGAIEFISASDGGIGHYIPYCRRITG
SWEVQNDMCRQWRKFTSLNTKMTLHIIIFTQTK
>46323846_BC#DNA/TcMar-IS885 gi|46323846|ref|ZP_00224209.1| COG3335: Transposase and inactivated derivatives [Burkholderia cepacia R1808]
MEKIDARKLGPEGRETLRKMVLRLNTQSGMNGVELAKIAGVHVRTVQAWLRKARRDGAGALVEKTRGRPYGACRKLTMAQ
EVWVRQRIVAAVPEQLSLPFALWTRRAIQALVEQQFGLQLSDRLVGKYLKRWGYTAQRPVKKAMEQRNDLVQAWLRERYP
AIAARAKAEGAVIYWADETAVKEDTNWIRGFAPAGRTPVLEASARWAKLSMISAITNRGEIAFQIVEGTINAERFIEFLE
RLITSAASKVFLIVDNLRVHHAKLVRAWVEPRAAQIELFYLPPYAPESNPDEYLNHDFKTALRLEPPSRDDSQLLKKAHA
IMDRIASLPERVRSYFQHPAAAYAAQ
>52548971_Archaeon#DNA/TcMar-IS630 gi|52548971|gb|AAU82820.1| transposase, IS630 family [Uncultured archaeon GZfos1D1]
MIKIEFTEEEMKALDYERYHHPHPRVQRRMEALWLKSQNVSHNQICQFTGISSNTLTDYFRKYKEYGIEGLKEVNFYQPQ
SELRQYTKTIEAYFSDHPPASVKEATAKIEELTGIKRSENRVRMFLKSIGMAPRKVGMIPAKADQDEQEQFIKEELEPRL
KEAKSGRRVVFFVDAAHFVLAPFLGILWSFKRLFIKAPSGRKRFNVLGALNAVTHELITVTNDTYINAQSFCDLLWRISR
LDIRVPITLVLDNARYQKCKLVWELAESLDIELLYIPPYSPNLNLIERLWKFVKKQCLYSKYYSEFKDFKNAIINCLNQT
DTTYKEELDSLLTLRFQRFEKAQVVAV
>37523645_Gloeobacter#DNA/TcMar-ISRm11 gi|37523645|ref|NP_927022.1| putative transposase [Gloeobacter violaceus PCC 7421]
MYVDQSGMDERDDYGYGWSPLGERFYGLKAGRRQGRINMIAGYRAGQLIAPFTVEGACNRTVFEIWLESCLIPVLQPGEW
VILDNATFDHGGRIAALIEAAGAHVLYLPPYSPDLNRIEKCWAWLKSRIRKRLRDCGHLRNAMDAVLKQAAS
>Mariner-1_AP#DNA/TcMar-m44 504-1805   [Acyrthosiphon pisum]
MIVNLFKSKMIQQPTLKVKEVAMIISKELGIGKNTIQSTIAEYKNKKTVSSPNKSKIRATYKQKVDDFERDAIRRKVHEF
WFRKQLPTLDKILTAVNEDPDLNTYKRSTLHLLIHDLNFVYVKRGRNSALIERDDIVLWRTKYIEDIRKYRAQRRTIYYL
DETWVNAGDCNDRIWQDNTVTSHRDAFLSGLSTGAPNPTAKGKRLIVVHIGSNEGFVDGGLLVFESKKGSSDYHEEMNGD
VFFDWLKGVIPLLKDNSVIVMDNAPYHSVKVEKCPTLGWKKAEIESWLEEKGEPFQRPINKVGLMEIVKRIKPQFNKYVV
DEYVKTKNMTVLRTPPYHCELNPIELAWSSVKRYVKSNNTTFKLPDVQKHLIDGVNQCTPEMWENFVKHVIQIEDRFWNV
DMTVDDVMDDDNLHVMTITGDTSDSDDLGCVALE
>Mariner-4_ADi_p2#DNA/TcMar-ISRm11 1772-3340 R [Acropora digitifera]
MSVVQVKIVYSYYSAERVTPIFLNEEELLGLSYEAFKWKIVNEIPHLSKTTDMDMLRLTVLDEGYQVDISPAYFQHQIKG
ILERNATKAIEVKALVFQSPGVASPLRKKTKTSNVAMSSPLSKKKLPFTQEFTTSQTEQDFEAGNPEEQEQCSTPFERYI
KKAESDVEKKKSELRKLEVEEKEISRRLLKVQSRPSDGNMCRNCHLLLGHTARNCSYGKCMSVFNCGEEKLHPGELNNRG
RRIAINKLTSEILKMERETQLKRETARKINQSLSQQIEQTILEENSSAYTTPGGLRNWSLLRKHVYIVENYCKINYGGKL
PPKHKLSNILSHALEAGHRDLPSEPLKQAKSRKNPAQSFLENHGVVFPQVINTSNSFPDLAFRCSPVTREEEEEQLNMVL
KQSLIESGSENTQQARNPSSCVPYHHHSSYHGAYTPPFAPGMMMVPPVRLYAPFQPQINPSPHEGSITRSTLQPSTQCFE
HSLAGTNIGSSSLQNAAELETPKEDQTVKETAELLLSLNAKTC
>37528628_PL#DNA/TcMar-IS630 gi|37528628|ref|NP_931973.1| Transposase, IS630 family [Photorhabdus luminescens subsp. laumondii TTO1]
MKIFITSEQKIKLERLHDTTRDGQVRDRIKAILLASEGWSSMMIAQALRLHQTTVDRHISDYLNHGKLKSGNGGSDSLLS
REQTDFLINHLSQHLFHHTHEIVAYVAQLWKITFSIPGMNKWLHRQGFSYKKPCGVPHKFDVEKQQQFIEYYENLKVAAK
DEPILFLDAVHPTQGTKLGYGWMRKGEKKTVKTTGSRTRLNILGALNLNAIGRTVFQEYQTINDYNICCFFNEIRKSYPD
YHQKIHLIVDGAGYNKAHLVKEWAYVSNIELHYLPPYSPNLNPIERLWKVMNEQVRNNRYFADKHEFRDKVFKFFTTTLP
DIADSLMSRINDHFQVLKTAS
>MarCry-1_FO_tp#DNA/TcMar-Fot1 102-1756 via tfasty with Fot5_FO_tp, 1 frameshift. [Fusarium oxysporum]
MSDPNYEARILLALQALQTNPKLSLRCAADIYKVNRITLSRRQNGLQSRRDWIPKSRRLSNLEEQIIVQFILDLDTRGFP
PRLRAVEEMANRLLADRDALPVGKRWAHNFVTRHKELKMRFFFRKYDYQRAKCEDPTIIRDWFRLVANTIAKYGIRSDDI
WNFDETGFLIGMIASGMVVTGTDRRGRPKSVQPGNREWITVIQAINAAGWAIQPFIIGGGQYHLANWYRESNLPADWAIA
TSQNGWTDNEIGLEWLKHFDRCTSNRSVGSYRLLILDGHESHHSVDFERYCEEHKIITLCMPPHSSHLLQPLDVGYFNLL
KNAYGREIEHLIRCSITHVSKTEFFPAFYAAHQATMTEKNIKSAFRGAGLVPLDPESVVSKLDVQLRTPTPAEEVANPST
PWVSKTPKTVLEAGSQSEYLERRIRRHHSSSPESVIEAMKSLEKSTKECMHKITLLTARLDDVQEANKILSRCRRAKRTR
LQKGGVMTVDEARQAIDQMDVDAQVVAESSRSSGQRKSVGPGVRRCGVCGKPGHNARTCQVVIGMSGEEYSE
>46110631_GZ#DNA/TcMar-Fot1 gi|46110631|ref|XP_382373.1| hypothetical protein FG02197.1 [Gibberella zeae PH-1]
MSLAVNDVDNIGLRASARKHAIKISTLKDRCAGSHDINTSHQKELSLTPEQEEDLETYIIDREKAFQPLSKAEIRGFAQQ
LSDVNGQIPYIGKNWVDRFFTRHPSIQKKATKVFEAARKRYVTRKTLTEYYDGLHWVINEKNITRQHIYNVDENGMQLGE
TRAGIVAGTVMTARSEVIKTDNSTWASVIECISAGSRRLTPVVVFTGKNLQGQWFPNVFPNWKYEASLSGWSNTDIFNRW
FMDTFIRLDASNLALLVTLTFITYYFSRSMLRVFGPLKTYYHQLTRAWATYEATSPHQQQLFIEAYKRASEKAISRRNIM
SGFSASGVFPVDVRKAIEALKPKERKRKTFEAPITPKRTQVTEDMTWSTPQGSADIQKQQKAAQSEGIVSIRDFNCIMTK
MMKSIDNKNSQIQRLEEEKAILKASAAAKEPTGRVPVQFDPNVAFPSIDEIITARDQAEKNQREAKMTLQAIVVMAPQPA
NLDNQPVSIFLAGTTTKTSKPDWRQVITGALLNYPVTILNPNRPDWDSTWREDFSDKRWVEQVSWELDMQEAADIIVFML
HEVTEAPISLMELGLAVRTKSVIVCAHPDYRKRGNVDAVCRRFGAKLLSTQEELVECLIAMLEEVKLTKPQGMLSS
>Mariner-7_AN_tp#DNA/TcMar-Fot1 43-1416 mariner-8_An excluded; similar to 7 and too many ambiguous AAs.  [Emericella nidulans]
MPPKARKTKRDLIEQEGRIQCAIQDIKNRKFQKIAPAARAYKIHPNTLRGRLHGRQSQAELRNHQHRLSLHQEEVLIGWI
VLLDIHGAAPRPSRVREMAQLILDESSTLSRPIRKNWVTEFTKRRPEIKTRFAWKINHQRALCKDPKIIRPFFNEIQRIK
VEYGISDDDIYNFDETGFAMGLIATTKVVSRAEMPGKPWLIQPGDRKWVTTIKCINSTGWSVLSTIIFKGKRYREGWFEE
LSIPHAWRIEVSNNRWTTDIIGLCWLQKCFIPAIQRWQRGEYILLILDSHRSHLTPAFDTIYKDNNIIPVCMPPYSSHLL
QPLDVGCFGPLKRVYRSLIKQKARLGYNHVDKLDFLKAYSEAYKKVFIIENIQSRFRATGLHPFSPAAVLDKLQLRPLTP
TPPPKQRYCFNPLLSTLYALYSPSGVSKSFISQKASKRGL
>14041729_XN#DNA/TcMar-IS630 gi|14041729|emb|CAC38400.1| transposase [Xenorhabdus nematophila]
MPIITSIPRNERRPMKKAIQKTRDKDYARRFTALLMLHEGSTVSHVSRTLHCSRSSVHRWVNWLTLYGLEGLKSLPAGRP
AIWNLAPLFTVISFLLQHSPQHFGYLRSRWSLELITLKINELLNTSLSQSTLYRYFCRTGIVWRRAAPTVKLPDPEYDEK
MAKISETLSNASEKHPVFYEDEVDINLNPKIGADWCFKGQQKRVVTPGKNQKHYLANCLNAKTKEITYVGSLRKNSDLFI
KLLDEINNQYVNAKTITLILDNYCIHKSRKVRVWLAKNPKFNLLFLPTYCPWLNKIERLWQSLHETVTRNHCCQFMWQLL
NHVKIFMETASLQQQKPGMRKMGVSQL
>Mariner-37_HM_tp#DNA/TcMar-Fot1 1469-3900 via genewise with Mariner-13_HM, 2 introns.  [Hydra magnipapillata]
MVKTRGGGCRSSPRFHRMSVGKIASVTEATICYNTTHLHDGITPSTSGSSTLDICQMKQLPTIDVSLTRVNGSNHSIDQS
VTVKKRGKFLKWSEENMMSAIKHVRSEPSFSVRKAAILYNVPRTTLRDRLSGKVVIGAKPGRKPTLPFALEEKLIDYASN
RAKLGVGFGKSQFLNYAGKLAAKHKFNFKKGLPSNQWWTRVKHRHGHKFTLRQPEGTASVRHQCMDKDKVSKYFSALNDV
MVKNGFHVKPESIWNMDETGLQLDVKPRKVVARKGTKNLHSRTSGNXESITVIACVNAQGKFIPPQVIVKGKTSRSLWGF
NTEFAPPGTNWSWSDSGWTKQGLAKLWFTKTFLENIGPQRPQLLILDGHDSHNFIELIDIAIQNQIHIVEMPSHTSNWLQ
PCDRTLFKPLKDYYRSTAQDLMGQFPGIITCRSNFAGIFASAWEKAMTSSNITSGFKLCGIYPFNPQAIPSDAYLPNYLH
IAEDISVNTTENNCSLVNVDASIDAGKVANYLEQLQNGTEEDNATHSSLQSNTSILEAETVVRNNQLAYLVNPVEEKNVD
CIVNSFTNLTKQKKKEILEPSNFNSTTVSDFPFANSSYPLVSDGDDDVLAYPKATARKKIANRKGQLKYFVLTSQEAYSA
KLKYHQDKIQQEREKCERKQLRFVNAAKRLKEKEEKKVLAKKKNN
>Acmar_tp#DNA/TcMar-Mariner not in repbase gi|19570323|dbj|BAB86288.1| mariner transposase [Apis cerana]
MQDQKEHFRHILLFYYRKGKNAVQARKKLCEIYGEGILTVRQCQNWFSKFRSDNFDIKDAPRSGRPVEADEDKIKALIEA
NRRITTREIATRLNLSNSTVHDHMKRLGFVSKLDIWVPHVLKEKDLLCRIDICDSLLKREENDPFLKRIVTGDEKWIVYD
NIKRELNEPAQRTSKNNIHKKVMLSVWWDFKGVVFFELLPNNCTINSEVYCNQLDKLNNSIKQKRPELINRKGVVFHHDN
AKAHMSLMTRQKLLQLGWEVLPHPPYSPDLAPSDYHLFRSLQNSLNDKTFTSNEDVKNYLDQFFANKDQKFYERGIMLLP
KRWQYVLDHNGQYVIK
>Mariner1_BV_tp#DNA/TcMar-Mogwai 516-2069 via tfasty with Soymar1, 3 frameshifts. [Beta vulgaris]
MDAAQEMYNAVVDEEDLDEYYLQLLEEIVPNFNSQISSEPESAAQDQNRKIKPEMKHEKRRKAVDELLIMEENGILPxGA
LKKTAEKYGVSRHTIERLWKRACNQRVTGDVIDVRSRKKGIVGRKSMEYSxGVLQSVPLNLRTSVRCFAGALKVSPSAIY
RLLKKGKLRSHTSSNHRSLTETHKLERMKWVLSHILPAHPLYKQMFIHMENIIHIDEKWFYLNPDTRRFYLLPREDDPYR
CCQSKRFKIKAMFIGVVSKPMYDAQGNLIHDGKFGIFPFVERVAAKYTTKNRDKGTIETKVVERITQKVIRDMIIQNVLP
SIMSKWPAGMSKDIFIQQDNARPHIQGNDEAFKAAATQNEFNIMLIQQPPQSPDLNVLDLGFFRAIQALMYQTFPKNIDE
LITNVQDAYDRFDPSVMKYTWLQLQWIMIEILQVRGGNNYNNPHHGKARLERLGLLPKTVKCDQVIVDEAVHYLNEKLPN
ESEQLEYFDNEGSLMKIKMNVCVHFFVKITIFWKYIKSG
>SMAR23#DNA/TcMar-Mariner 176-1213  [Schmidtea mediterranea]
MNPVEYRSVIKFLVLRQTESSEIFSQLSATYGTTAPSKTTVYHWIAQYRGGRQSVFDDERPGRPVEIDHENIAKRCEIIV
RDERRITLKELQRRLNISDGKVREILKDLGIRKLASRFVPRFLSGEMCQARLECCQQCLSLNDQHGSRFLDNIVTVDETP
LSLYLPESKRESSEWRFPDERAPRKMRAGTSHRRCLMLTIFWDSRGVIKVDFAEKGVTINSAYYADLIAETRRLRRKPRG
SPLWLLQDNAPVHKSAVSKQAIDDAGFSIVPHPPYSPDLAPSDFWMFRHMKKTMRGKIFETPDSVKDSVVKFLSECDQNF
FKTAFLELLKRWTTCVNNNGSYIEK
>Mariner-6_NV#DNA/TcMar-Pogo 1-2100 [Nematostella vectensis]
MELVEPEEPPKIEASEAIDSSEHTTTESVDNVAQAAEESLVNDSFTVNEPPIAIGTDSAKKRRRELSLSEKIQLIHESQT
GTKSQRKLADIYQIGKTTVHEILKKKDDILKAYEQNVDGGRKRVCTRSAYSDINRLAWQWYERMRAQGNQISGPMLQEKA
RTFAAELDMKDFRASNGWLEGFRRRHGISFGASFSGYETSVNVTTEWTEKIMEVTDGYRSTDIYNLVETGLYYRALPDKN
LVPETESTSTERLTVTLCCNMDGEFEKPLVIGPTANPPCFAKLDSECLPVIWRANRRAWITTSIFADWLRTLDRKMRQKD
RRILLFLDNSPPHPPTLQLTNVKLVFLIKPSNNTVNQLQPLTQGIVEAFRMAYRRKVLFSTLAKLDDSNSPRSAKQLMQE
ITELDACFWIAATLDEISGSTMMNCFESAGFLVNTSADSSLSSYSMAFPPQAVSTSPQTSSTPAKAGKSKAKVKKQIKLP
NTSTTFEEIMSSAAYRIMLTQPMTVKEYITFDAKLKVADDLSEGWEERLVEDYCDNKKNQVFLLSNTAGSEGTENIEIEA
KIEPVIQTYPEALNINKQLMLFAVKENDGDLVKALYKVEAQMQRSHLKKLSSVNQKDVELNDLVTTKINMNTVTSSVDSS
EAKGGDKVNGTLQQEAQALEIMNQFNQLTSQDQSQETIVELTTVIPESTTICALVPNNP
>Sagan-3_MLP#DNA/TcMar-Sagan 138-2477 via genewise with Sagan-2_MLP, 2 introns (927:1005, 2267:2340) [Melampsora larici-populina]
MATKAQKAQRRRRHGSEKSPKRLKTNQFKPWLTLPNNSDQSSSSSSSLSSLESESSSLFDPESVQEALVNSSDSISNESE
LNSLDSISDDSESLPSHESTDHISQTTHQHQDSSLTHTKTPYQLEMINQEWNQLNQAIQDASNYCKSHPTPTPIALKKAD
QLSLICEFNNRRRILNLKNSKSCAIQASRETVHNLWLRQQNPPNDGSGINHASRIRAQAAHILQHRRLPESGRGKSTPHT
SILDNSEVLKIIADWITEQPVGRVTPKTLTRYVNTEILPEYDQHKETISVSTARKWMHRMGVHVNEYRRSVYYDGHKRAD
VVIYQKQFIKEIFELCKRENQYGGEMMDQIVYPELKDNTREIVRVYHDESTVHTNEQPRRAWMSNKDVALRTKSIGKLIH
ISDFICLTTGRLVLPPDTISTLPFRDAAVTIYPGAKEGWWDAQQLVEQIVTRAIPIFEHNHPKAQGCFIFDCSAAHESFA
SDALHLSKMNLKPGGAKAKLRDTVIPSDDPNIPMELRGKVQTMNFSPDYVNPAPSKKTKRGKAARTEDLAGKPKGIKQIL
IERGLWDHHNKLRALRGEKEMSLKCKDCKMTGSAKDKIAXSRAITXHAKIPEEKDRPTPSDALPVVDIPNCCAHKVLANQ
SDFANEKPLLQQAIEKAGHICKFLPKFHCEFNPIEHLWCYIKLRYRDHTFECHSLQEAKDLFEKIRQTCPIETIRRFFRK
TDGKMTELM
>SMAR3#DNA/TcMar-Pogo 301-1804 via tfasty with ATHPogo_tp, 1 frameshift and 1 stopcodon.  [Schmidtea mediterranea]
MSKRKAATLEEKYEIIKRIESQKVSQIQVSIETRVPRSTIARWCGLEKDKIIEAYEASNQSPARKRLRGSKYEKIDECLF
EWFKEKRKVNVPINGPILQAKAEDFATLLGQDFKPCNGWLDRWKTRYNVSFQILNGESAKVNESTVEEWLSKLSNITKDF
KFEDIYNADETGLFYKCLPNKTFNIKGEKCFNGEKSKERITILFGCNATGSDKLTPLVIGKSLKPRCFKRINMSNLGVYY
RSNRKAWMTEEVFREWIAKIDKKFQAENRKILLFIDNFSGHALKSQFNNVKVVFFPPNCTSKLQPMDQGIIANFKLKYRS
AMVRRILENLDGEVDRENIEEINVKQAIDFIVSVWKDMNCSIIQNCFKKCGFDIEIASNNDNNDIEPIKSAIVQLQSNNI
IPENFNFEDYVNCDEELAVSAIIDDQEIVETIFEKDKEIADKTDEQIEEDEDKFQRPTKKQALDAINTLRYYFQCDEADT
KDELEIIHNRKRxVFQIKNKQ
>Mariner_HC_tp#DNA/TcMar-Mariner 188-1168 wised with Bmar1 [Hyalophora cecropia]
MANMKYRYIYEYEFYRGTSAAETARRINNVYGAGAAKESKVRFWFQRFRSGIFDLQNQPRGRPEIKVENEEXKAIVXADP
SQSTSEIAAGFGVSDKTVLIYLKQIGKVKKLEXWVPHELSESNLQTRVDCYVTLLNRHNNERKMYDNRKGSLQWLNPGDP
AKSCPKRXLTQKKLLVSXWWTSAGVIHYSFLKCGQTITVDIYYQQLQAMKEELAAKHPRLVNRSRSLLLHDNARPHTAKQ
TTTKLNKLQLECLRHPPYSPDLAPIDYHFFRNLDNFLHGKKFNSYSVVQTAFKEFIDRRPHAFFNKGINELPVRWQKCIN
NNGAYFD
>Mariner-2_DF_tp#DNA/TcMar-Mariner 209-1266 via tfasty with Mariner-1_DBi_tp, 1 frameshift. [Drosophila ficusphila]
MDQRTCIKFCVKNEIKCVDAFRMLTVAYGEATLDRSNVYRWYKMFSEGREDVNDEERAGRPSTSTTDEKINEVEKMVLAN
RRITVREVAEDLNISIGSCHSIFINDLGMRRVAAKFVPKLLNCDQKQHRMNIANEMLNSVRDDPNLLQRVITGDESWVYG
YDVETKAQSSQWKLPHEPRPKKARQVRSNVKVLLTVFFDCRGVVHHEFLPQGRTVNKEYYLQVMRNLREAIRQKRPDLWK
NKNWLLHHDNAPAHTSLLVRDFLAKNNTLMMPQPPYSPDLAPCDFFLFPKLKRPMKGRRYATLDEIKTASKEELNKIKKS
DFLKCFEDWKNRWHKCIISHGDYFEGDKIDIHE
>MAR1_TV_tp#DNA/TcMar-Mariner 97-1224 [Trichomonas vaginalis]
MYMMSMLYFGAMPGYKMNFETRGGFAGNFGGIFFIFLMNHKENILALAKKCKDCKKIYETLVKCFGMDAPSYSTVTYHVR
MYHFMNKKAPIIKIDKKSPDQRKIKAILQALDEDPRASLRRIEEMTKIPRTTVSYYLHNYLNYKLAYTRWVPHNLNSVQK
KSRVQSSKELLSILGAYQSKKFRFLVTGDESWFQYATEAKIMWIPKDENPQTFPKKKIDTPMMMLSVFWGVNGIIAIDIL
QKPNTMNAQYLIDNVLTQIINSDEFEKSKQQKQKFAIHFDNSRVHKSHKVMNYLVENNVKVVPNPIYSPDIAPSDFYLFG
TLKKRAEGREFASPDDLENFVREQFEQFSHDDLKRVFQAWIDRCERVIESNGDYI
>Mariner-2_PPc#DNA/TcMar-Mariner 166-1182  [Pristionchus pacificus]
MNTARDYRSVLLHYFLLGRTATESHRKLVQTHGENAPSLHTCFNWFTRFKRGDYNLEHQPHPGRPSSRVRGRVLRELKAN
PKSSVRDIEKTIHIPKTTVARILHDAGKTPKLPQVIPHDLTTAQLKKRVDVCQGLLHRRSNFNWVSHIVAMDEKWITYDN
PERKLQWVDVDEKPQQAPKAELHGKKELLCFFFSVLGPIYWEILPPGITIKADLFTTQLEEVAVRVPPKLLSEGKILMLM
DNARPHHAKITQKKMDELEMEWLPHPPYSPDLSPCDYHCFRSLSNFCRGKKFKNRDALVKEFEAWINSKPQAFWKRGIET
LPDRWRQVVTTKGAYIDY
>Mariner_CA_tp#DNA/TcMar-Mariner 131-1213 [Chymomyza amoena]
MESTKEHFRHILYYYFRKGKNAEQVAKKLRDVYGDKALKERQCQNWFRKFRSGDFSLKDEPRSGRPNEVDDDQIKALIEL
DRHVTEREIGEKLNIPKSTVHYHIKSLGLVKKLDIWVPHELKEIHLTNRINACDMHLKRNEFDPFLKRIITGDEKWIVYN
NVNRKRSWSKHGEPAQTTSKADIHQKKVMLSVWWDWKGVVYFELLPRNQTINSDVYCQQLDKLNAAINEKRPELINRKGV
IFHQDNARPHTSLMTRQKLRELGWEVLMHPPYSPDLAPSDYHLFRSLQNSLNGKTFGNDEAIKSHLVQFFADKGQKFYER
GIQNLPGRWQKVIEQNGNYIFD
>Mariner-7_DF_tp#DNA/TcMar-Mariner 332-1348 Mariner-10_DRh_tp near-identical [Drosophila ficusphila]
MAKNKNTNPAERKLIWEYYEKNTSILQICKTLHFSRGKVRNAIAFYKKHGTWENIPREKPRKTTLNDDRRIAKISKADPF
LTSTQIRGQMVADYGVNVSAQTIRRRLNEFGLYGRIAQKKPLLSKKNVKARLQFAREHFQKGPNFWNMIVWSDESKFNVF
GSDGKPYVRRPPNKQLDPKYTKKTVKHGGASIMVWGCFTASGVGPLVKIEGIMNGEMYRDILINNLSGEYADNLPLAWIF
QQDNDPKHTSKIVKSWFSQVKIKVLQWPPQSPDLNPIENLWGILKQVVGQKKPANKNDLWRVLQEEWKKITPQQCARLVG
SMPKRCSAVLKQKGHPTQY
>PiggyBac-6_HM#DNA/PiggyBac 471-2045   [Hydra magnipapillata]
MADDNIELNDSFERLLLQSDDEHDSDLMETIQQDESDESDSADSESTDGGSDDGSEEWSKNVQKPLRWDFDDGTAGMNMD
MVMDCKEPVDYYNLFMNNELIDFIVEETNRYGPTKDSNYLPTNNMEMRKFMAIILQMGYVVLPKLDDYWSSDPAIGGKAI
CGGVMTRKRFYSLMRSLHFADNDNNNGSKLYKIEKFVNLFIARCQHLLVPGRDICIDESMIPFRGRLRFRMYIPSKRHKY
GIKIFKLCSNNGYTYNLSIYAGKEDQPRYGSVAERVVLKLMENLLGHGRILYTDNWYTSMNLAKSLLENKTNLVGTARKN
RIGFPKHVTSLKLKKGDYVAEQNGDGIMILKWKDKREVIMLSSIHDGSITERGKPAVIVDYNKGKSFNDLSDQLGSYCPY
VRKTMKWYLRIFFHIITQVSIVNALHLYKLHSGKNIKIVQFKRDIVSSILQLEKPTSSGRKHQLEKEPGEGTIRKRRCTE
CYNKLSKEFGATIARNRASQIKTRCDNCLKPFCLACFQKCHTKC
>PiggyBac-3_HM#DNA/PiggyBac 224-2389  [Hydra magnipapillata]
MASYKRTYSNMEEILKIVMDESSDDMDLGELSADQSEPETDWEYEEEDIEFVRAPNLPLSNDFQNKNCSSLPEFCQINHV
YKIDIDEEEEEEIEQNSSEETYPNENKETLFSDQLFDSTRENGIAERKRVKVRGGIQKNSVNNKNRILQVTNRGKEKKGN
NNRGCRGRPWGRRGQSNARVLKINQQGIDLISTWERVKIDNTADPIIPFFELEGLRVRMTHENPSPLDFVELYLTPSIIE
LIVIETNRYAQDFIDKNPNKASNEYVGNWEPVTVLEIKKYLALVLLMGIIYKPDIHMYWSTSEFFSTPIFSKIMSRTRFQ
LILKFLHFNNNNDPNYDVNDENRDRLHKVRPLIELIRDRCKNVFCPGQNLSVDESLVLFKGRLHFKQYIRTKRARFGIKL
YELTTSSGITLDFLVYCGKGMFYEDGNEDMPSTERIPAALMEPFLDKGHILFTDNYYTSPSLATFLLGRNTHLCGTVKSN
RKKYCKEIAEFALEKGEAVFYRSTIDSRVIACKYRAVKNKSGNKQKVVYMLSTCHSAKMIETGKTYANDSAIYKPSIVRS
YNSHMGGVDRVDQQLHSLRTLRKSYKWYKKLAFRMISQVILNAHKVFQHETGKSKITFLDFLHETISSLALINPAIPNNQ
ILDDTLSRLTGRHFPSLKVASPDAKDKRPTKRCRVCYARGKLSAKCQPLKTTYVCRFCPSEPGLHPDTCFEAYHTQVNYL
L
>PiggyBac-13_SM#DNA/PiggyBac 554-2232 via tfasty with PiggyBac1_CI_tp, 1 frameshift. [Schmidtea]
MSHHNEDSDQEIYADNLSDTSCESDFDSDDSDLVDDEDIIPLPTTFTRRTISSSSDEEEVDGWSINDNPPVLEDFLGIPG
ITLNNPPKTQMDVLKLFIDDDFFKFLVIESNRYYYQNIDRLKSQTKGIKWKDITIPEMKKFVGLIIFMGLVRKDRRNEYW
TTDPVLETPFFGKTMSRDRFNQIWRAWHFNNNEDITDPSDRLEKIRPIINHFVEKFKNIYKPKQQVSLDEGIIPWRGRLF
FRVYNAGKIIKYGILVRILSESDTGYICNFEIYAAQGLRLIETIQTVVSPYTDVWHHLYMDNYYNSVDNTVALLQKKIRV
CGTIRKNRGLPECLKKPDLQRGDTIFRRKNDILLQVWKSKKEVSLISSIHSAEMKESHNVDRMTRQKIIKPNALIDYNKY
MKGVDRADQYLSYYNILRKTTKWTKRVAMYMINCALFNSFVVYNSITTKKIKYKRFLYDIAFEWTSDSIHEEVISEDPGP
STSSWKRAPSRDPPGRLSMDMRKHVIAKIESKGKKKFVQRQCRVCSARKVRSETCFICKFCEVPLHRGKCFERYHTLKQY
>Uribo1_HM#DNA/PiggyBac (GenBank ref|XP_002166954.1|) Fragment (missing C terminal ~200 AA)  [Hydra magnipapillata]
MYKTLKIIDKNICSCLSVSAKMALRNRIINDPNEVLQILDEKDDVSDLSFESSESDDNEFQELMPDIFSTTAPLTMTLSP
SQSSSSEIISSSSSEEYVSSEDDLTENIDVAFSINNLVTDDNKGLFTIAFADSNDTVNNKRKICKQSSSKRLHTIKTKKP
TISRMEKLLLLLVENGKKNKIIRTITPFMATPGPTFRRSAIPNCDGNIKPIHLVELFFDNALTQKLVTETNNYHSRKLQS
SPIKHRMIWVDVMSNDIKVFIAICLAMGIIKLSCIHDYWRQKLWFFAIPSFSKVMLRDRYRQIHRYLHFCNETAAIPRGN
KGYDKLFKVHILLDDLCPKLRNLYKPKRDICIDESMIPFKERISFRQFIPSKRTRFGIKAWVLAEPSTGYISEFLIYTGK
DTDGLKHHHLAGAVCQLTQHVLKQGYHLCFLFILQCPFMP
>PiggyBac-14_SM#DNA/PiggyBac 379-2016 [Schmidtea]
MSDSESEYEYANLSESGSEDSDNYSSDSEDSSDEDIAVDWKQISDSQPNPPPPRFPFVGASGPTFFFDNNFDVLEYFKLF
FDDSVMDIIVLETNRYAEQQPGGSTTQWKNVDKNEMMIFFAICILQGLIKKPEERQYWSTNEIWNTPIFPKLMNLRRYTS
IKRNLHFCNNETFDRNTHPNPKLYKIWPIYEIINNKCSSLYIPERDITIDESLLLYKGRLGWVQYIPLKRARFGIKLFLL
CESKSGYLFSFIIYTGKGTVIDVKYKDMPVTSQIVVSLLDPLLDQGYCLTTDNYYTSPQLADFLVKHKTDTYGTVRKNRK
DIPKFIQTKKLKKGEIVAAQRGKVMVMKWQDKRDICLLSTIHNTEKAATNKTDKDGNVVSKPKLVLDYNETMGGVDRLDQ
HLHDYPIIRKRGKKYYKKIFFHLLDISIWNGYVLYKKNGGGKSNLDFRSELVEKLIQNYHSEQNIKKSGRPKSTGILRLT
ERHFPSFVPPTPKKEAPTRYCAVCCSKRDSKGKRKRRESRYMCNPCNVGLCAAPCFEIYHTKENFE
>PiggyBac-1_BM#DNA/PiggyBac 725-2263  [Bombyx]
MPNKRTRRCMRFPSSSEDEDGSNVPNQQTEIAADGTIWTRIEEGGVVGRLPIHSAFKDVHGPTAHAKRNIMKGNLSSAFL
LLIDNHILEHIRICTELEASRVLGKTWTITQEKLKAFLAILYARGAYEGNTLRLQYLWNKKWGPSFFSSTMSRRDFTDIL
RYIRFDKRNQRSQRLQTDKFALVSAVWDKFIENSQNCFKPGAYITVDEQLFPTKARCRFTQYMPNKPHKFGIKFWLASDV
ETKYVVNGFPYLGKDETRNASTPLSEFVVMKLLEPYTMKGRTVTTDNFFTSIPLALKLRSKSTSLLGTIRANKRELPKIC
KLKKDSMARFSTLLYQSNGCTLTVYKSKPNKKVLLLSTKHKNIKIDKAAKKIPETVLFYNKTKFGVDVTDQMARKYTVKS
GCRRWPLQVFFNILDLAGINSWILYKNTTGENISRKDFLFRLAEELASEYQTSRQKPHEADISTTAGTVSVRKWCQIGYC
NNNKTTNICNKCKKSLCGKCTKSKIYICRNCER
>ISL2EU-7_HMa_ex#DNA/PIF-ISL2EU 3448-1787 #reverseORF [Hydra magnipapillata]
MMSSFNANLENKIDASSFQNSCQASKAVYRELKHDELISVDEEESINKSISTWSRDISLLPNISHNFIKKYLVNDTIYID
NCKKGANKHQTLGYRLFKENYVKNVCVKANVTASINLFIVKSNVAASMKRKQYEVFIHLCQSTGEILYAKCHCKAGAGGC
CKHVAASLYQLVDYKELDIKVVPETETCTDVLQIWHVPGESSNSEAILFSNLNFEKADAFKDKNSTRKRPLVSGTRRYHS
LPNCYETSTLQLQTLCEGLENLCQGTYISSIIRDNNFQACSFFNSSLSTFIDNDIAEPFSKKDDRLIIITLFDNLQNMID
LSCLSTEQKAFVELHLIVDIEEAKNIEVNTVKQSKSILWYQERCKRLTASNFGTVMNRWKKIYPTSILKKCLQTKNIKVG
ESCMWGKVNEDIAIKLYESITKSSVTRCGFFINPKCPWLGCSPDGVVSAEKVLEVKCPSSKKHLTIEEACQDKNFYLKFN
DGAPKLKINHPYYYQCQGIMALTETKTIDFIVYTEKSLHIETIEYDAELWNTIIFPELTDFYFKFMSTEIFKVK
>ISL2EU-5_HM_ex#DNA/PIF-ISL2EU 3768-1876 #reverseORF [Hydra magnipapillata]
MSDSSSDNEKIKPFMDEIKNWNVVKLKEFLQARSIPLGENPSKKKLLKNVYYANKLKLPLNKTVQEETEEIKSRSLQKLK
LKSGVQLPHPFEIGNWVLEKEVVIKLLPTTNYLDIETYSFLTHSSKALKEGHSLYSSGHVTSVAFNSLSDAVKFCYLKGT
VVPQTRINDEEYESWVCLNKNGSIFTAECNCVAGYGESCKHIFALLLFVEEHVRLGDNVTCTSVKQKWGTKTQKRKLHEP
DIFQNISIKKVKSSLENSNLKLSRFLYDPRPYYLKQSEFTKEDWEAVAEATDGKCAVICLKPNIQSEYFMKKLPLNATKN
KVLPPTIEHYVAQIECSYKNESITFKCEKFLRTFSITPSQAELIKEATISQSKSLLWKSYRVGTISSSIAHAVIAKFDVD
LKVKNKKAAFNLCAQILCYKNNAKSKSIQWGNMFESYARKRYIREMKKTHKNFTCYQTGLIVSIKTPYLTASPDGITSCT
CCGLGLLEIKCPWTFRQKKICEYAQSAESFFEKNSCTNTYSLKSSHQYRTQIQHQLFISGYPHADFYVCLASDQNCERIY
SDPNYKKNEQKFQKFFTEYVFPELITKKLEKKEIVTTILNDLIKKCINDSNSKQVNEKLTNDIINLDQQKI
>31207297_AG#DNA/PiggyBac gi|31207297|ref|XP_312615.1| ENSANGP00000022573 [Anopheles gambiae]
MGDAMHVQWLSEETEEVPENEEDMLYEDVEYIEEYVHFPDGPESNVSGSVAVQNEESTGHVIKIESIDHAFDMLQNSVWS
IKPPERTGTMGRKVAHPRPAPVGLAKSAKSPAECLSLFLDADVIAMITEYTNEQIKAEQPNYARERDANPTDEMEIMALL
GVLYIAGTVRDGRENIERLFDTKMGTGLEAVYLTMTSLRYHFLIRSIRFDDPTAAPDEIEGDKLAPIRPIYERIVSNCQK
YLRPGRFLMLDEQAVQFKGKCEFRQILPSAPGRAGFRFHLLVDCETSYVSNLEICVPENQNPYNLSYAPTDVAMRLTEPV
QGRQKTVILGAGLTSIDLIEKLYASRTMAMGEVPKSYPDLPKALIANKGRPEHSTLAAYHDPATLVSYVTRRKEVMLLMS
SFVDFDSEEQAGEQDEGEQHLKLVELYNRTKTTIRTIQQMCAKHNVVRSTRRWPVAVFFNLMNLSAINAWCIYCLNHPEE
AKMSRRDFLVTMALELLRPQARRRLDSKTLPRLLRQRIGLFLGISREEYETVPVVERQGGESRGRCYLCGRARNKTTRIS
CHSCGKYTCNAHCAQLCRTCYMDDCASEQQE
>Looper1_DM_tp#DNA/PiggyBac 409-1149 [Drosophila fruit fly genus]
FSPKVKGLSNEEIERALNFDWDISTDEECGDEMEDISTVLEKNLEGILERGESIEIDLLENTVIEGCEPDSCVVVDSCLE
KIDPKTLKWRTRPFVAPESIWEDDKTFDVGEIKTPVEFFYTLFDTQLIHLMARQTDIYSLQEHGIELKCTDEEIKRYIGI
LLYFGVLKLPQFRMAWSKDLKITAITDSMPRGRFKKIKQCLHFNDNAKQLKKGDCNYDKLYKIRPLLRILKENFGKTNAG
RASKCR
>50741428_GGgene#DNA/PiggyBac gi|50741428|ref|XP_419582.1| PREDICTED: similar to PiggyBac transposable element derived 5 [Gallus gallus]
MIGKVLAKVCNMRVKKAVLLVVLLKHYLEKQLCGIANWHPDRPMPVFEFPANQQELIKTIKKNSLPGVRNGSNSISEQTG
YTGIKPIGRSGLSETDRIQVHTQHSAEVRVDSELCFWLFVCKYSSPEAFPGAQELVNVCISPEPTQAVQVVNPPFCPTRK
MPLTASAMDFFQLFVPDNVLKNMVVQTNMYAKKYQERFGSDDTWIDVTLTEMKAFLGYMISTSIHHCESVLSIWSSGFYS
NKSIALIMTQSRFEKILKYFHIVAFRSSQTTHGLYKIQPFLDSLQNGFDSAFRPSQAQVLHEPLIDEDPVFIATCTEREL
RKRKKRKFSLWVRQCSSTGFICQIYVHLKEGSGADGLDALKNKPQLHSMVAKSLCQNASGKNYIIFTGPSITSLNLFEEF
EKQEIYCCGLLSARKSDCTGLPPSMLNNPDTPQSRGQYRIRMKGNMSLICWYNKGHFRFLTNAYSPVQQGVIIKRKSGEI
PCPLAVEAFAAHLSYICKYDDKYSKYFISHKPNKTWQQVFWFAISIAINNAYILYKMSEAYHVTRYSRAQFGERLVKELL
GLEDTSPSH
>Sola1-3_AC#DNA/Sola 518-2582 via tfasty with Sola1-1_AC, 4 frameshifts. [Aplysia californica]
EFDNSDTDPSFQLGLSEARRCKEEVFAACDRCDALLCYVHFLEDTNVCDHGNRKKTALTKKKRKRKQNDQEKEEKKTELT
KKKKENKAVKENRKVPESSEQPEHFVLEGSRKEHTVEKQPRINKQKAAKRKLASGEDYFSPYTKKVMPAKKMGKACLGVT
CKNRALECDTITESLRKDIFQEFYSLASLQLQREFILRHVVNSDKKKESSHQSRRQKTNVYYLTAQGSLVKVCKKLFLNT
LAISDRTVRTAFKKLTPSGTIEKERRGGRQSTKIVERDTKIRNDIEEHLRRFPRMESHYCRASTAKEYLHPDLTLEKMYS
MFLEQYHGTDPSKFHTYSRVFKKANLAFHTPKKDQCSLCTTFFEGDETTKAELKDAFEKHVSEKKRVRKEECKQRASKDE
TVLSATFDLQQVIYLPISNESALFYKRRFSNYNLTFYNLGRTDCHCFLWNESQSKRGSSEISTAVFEALQHYDSCGKKIA
YLFSDGCPGQNKNTIIPTMLLYSVNTLPNLREISQRFFVTNYGQMKGDSVHSTISSAMSAAGNVYVPTELTPIFRLARPK
QPYTVMPLEFSDFWNFKQLSLDLRVLGVQRDSESDTINWNKMMEFRVLKECPTTIFFKTSHIESDYRTIQLKRHTKQTTE
SFTLFKLNTEPTKVPMAKYNDLVSLCSGVTPVVRQADHKAFYFSLPH
>Sola3-3_HM#DNA/Sola 1569-4836 via genewise with Sola3-4_HM, 1 intron (4373:4530) [Hydra magnipapillata]
MRLNDNNIWEENGLIANRLKRNLEKDEQICAFHRYTFGIAWSPPKTCFHPHHLNIKGKKSPALRASPIHVVISMSKRYNE
VFSVGAMLCFTHLKQETALSRVNENTNLCTETQTQQEQTYMTPATPDEEFDPGEINVSQEILDESLRSRESVTEVLNASP
IKFRLKRKFEYLEDTTKDKLKRKYVRLENLLKKKFAEAVAPGQEEILIDFLNSKNVDEINSPLPIEIIRAQKVYKQSDSM
GKLVILSLLDHTKYTKKFIMNTFECTKHRIETARKWHASHKGLAFPEKKVFVRSSLDQTKCEHFLDFIFTSGILHDVAYG
ITKLKYDSGEEQKIVHAILTTKYSHAIMFYRKSCSENNYIPLSDSSLWKVLHAIKPSSRKSLAGLDDVTASGMNGFQTLQ
KLAQRFSSKSLEAALEKGKRYLKTSYQTNCSVNDSNISSHSSKHALSDPSEKNLQSNTEISEVVCADCYDLCKAIEMIKE
LTIQNSDDADSIYDLEIAVKDVFNYIKHLMRDSQQKKAKIEAFKQLNDETAFWLKDFCQKILPVRYREGQREYFGKKGMS
LHVDIFFIKIAGKLFKRVYFTSMYRCDQGIGDVVSLATAVLDQFRIDQPHIKKMFTKSDNAGCYQGNLSAEAIYNVCKER
DIKLLRYDYNEPCCGKDQCDRESAVVKTILRSYVDSGNNLLTAEDIHKAMHYSFGAKDAKVAVAQISNDKTVVTGPKIKN
ISNYHSFEFGEKSMKMWRYFNIGEGIEQEYGNLKIQPSIKLLLPYSKTDNSIKRNKSLKEKQKRSDRQLYSLRFCTEMNC
TLSFESDAELEEHMLSGLHTVPKSLTSLDKVRNSFVHKMKITSQLNMPISSSSNSASVKDKPHCMNIFLLQGWALPVRSS
FRFSNQQKELLYKYFIRGEESGNKMSPEQVHMQLRRELPPDQYVTSQQIRSLFSRFSNLKRKGKLVEPTTENNENSQVND
NKEVYGENDDFNLTGDNEDDNKYEEDIANLAKEICLVWKVNDWVAVAYEKQWNIGYIVEVILFKVYISFKFLFCFTK
>Sola3-2_PS#DNA/Sola 161-4060 via genewise with Sola3-1_PS#DNA/Sola, 2 frameshifts, 2 introns (2903:3094, 3540:3803) [Phytophthora sojae]
MPPRAASALVVVLYEAKRRDFEFLDISQWYQCMHPSICRRSTRRYFSPSAPAEFKIQMSENEGQRGETEASKFPDITCGC
KRPRCPVTGCWKCSRCGCSCDGLSPSVKRARTRGRPLAAVALEGCERALSVSSVDPAISVAKRSTRQKSQRVRNVLIDDG
SDCGDVDISPPVNLSAESDVSDCGAMDILSPVSVGAGPAASAGLRAQNEAGMYLSPAIFTPTPKARKRVDIFAVMQFLVC
EETQINMMKKKLPSKERRCSESFWSSSACGTGNDPRQQESQNAFGDQPRIEREHQERAVALRLVWNLLSHICTILCRKQT
ASVFLELFRSWISPGQISTISTIATPVRVFMATKRGSGERWCVRALLCDAFPLSTLTNTAEQIEEFSFGRKNYMAGQKDL
XVLLVEGRIEKPKWSRAKYEKSTIDEAIRHVLSMDNVAFLSWGTKTVKVDGKKQIAPSIQRRKSITVIYEQYRARGGSIP
RSTSYRLAGALTHGEVQARCAVDYVTGFLVNDNFRLLERIVRELLPEASIELLPKLSILREWLKYGSGFDIDTDSHPDCS
KCPIHQVTYGLSLPKPGDQSSRTVCCRPCVAMCQLIDDVTKRLTVAEVDSTTIGVVKESHKKMELFLGHRIRVRNQQWAI
REAAEAISNRSQRAKHSNEALVILDFKMKLEPTYFREKTVEHYGKRGMSWHGALVRYWMYDEDSGEAVETKHYFDQICNG
DNKQDKEATAALVEALLLSLRRDVPHVTRLTFQSDNASNYQNAYLGLMLPILGEVHGYYVMRYVHSDTQDGKSMLDAHFA
TASRKVKSWVRQGNDCATPAKVVEALTADGGLPNCIAELIEQDRAHGAELSQQVRPLEKSLSKIIDRANDIFYDFPLPLA
PLESGFDLKKVPSYRMXGVGEGTNIIVDPSGGRCMCDGVQRDSGQNDCDGDEDVSDFEVEDEYLLDDDSDLXPVEDDSAV
VGEAVVLPHEATGIMTGIRIKTSAQIXRRTRVMSSLTPVQAQDTSVTEENVTENDVEAYAKRKLLKLNIGGDFAARGELS
SKMLTIYPSANAIAPPVTARTATISVNPLKMGWARRPKRGEMYGTKYVALYEKEIEAMFQQGEKDQSQNMGPARMLEALI
LANPHRYNLPGEN
>Sola3-4_HM#DNA/Sola 1171-4202 via tfasty with Sola3-3_HM, 1 frameshift. [Hydra magnipapillata]
VLKSYELAGDWWNEKSLIENRLNRDFNNTEKICAYHRYTLGIGWKPKKKICMHPNHKVQTGKKALLGRPAQISMTLQISS
HYNSYIPIGSIICNRHRKEYYSETRNKETKIITEHESTSTATDIDYIPDEFLQNQEKLNTSNEIREKITXCLGTSPIKFQ
FKRKLELINESTKQQMRNKYKRMEETFRKKFAESIAPGQSEEFLKVLEGDENAETEIPDEIEKLVEMYKNSDATSQLVIL
AFIDHNKYTKQFLCNTFKCTKYKIELARKWKASQKGFVLPQKNLFTRSRLSIPKCEHFLDFIFLSGLLQDVSYGISKIKY
DSGDVETVASAILTAKNSHTIALYRESCKEIAYEPLSNSSLMRILNGIKPSHRKCLAGLNDTAAAGMNAFATLEQFANIF
NKKSTVEKLERSKRYLKTKYKLHCSYLENEIATHSTRFALSDPENIKMQTTSILNDSVCYECNELFEVLDEVNQIGNEND
VGDDVLYDIKVSIGSITEYMKHLLRDAQQKKAKNDAYKQLDDKTAFWLKDYSQKILPVKFREGQKDYFGKKGISMHIDVF
FTKKNDILKKHVYLTILYHCDQGVSSVISIAESVLNQFRLDEPEIVNIFAKSDNANCYHANYSVESMYILCKKKNFKLLR
YDFNEPCCGKDQCDRESASAKTILRSYVDAGNDIVTAEDVAKAVKYGHGVKNGMVSVAKIENVTLTGPKIPNISNYHSYE
FQENYMTLWRYYEIGDGVKVLYNNLSVEPSIELLVPFTSTEGSFQRKTQSGKKRKKNCGLNTLHFCQETGCIESFETVIE
LEEHMLTEQHKKSEQSSSLDKVKKVYTEKLKATLQVHSNSMTASVKITPIPINNIYSQKFHQLGWALLTRKTFRFSIKLK
KLLYEYFINGENTGNKMSPEEVNTVIRKNLTADEFVSSQQIRSLFSRWSKLLRIGKLTPLTNEEDNNNELENEEAKKYQE
EIHKLATELSVIWLKDDWVAVVYKNQWYPGVVEEIKILYILFNQKLIPYKTK
>Mariner-1_GLuc_tp#DNA/TcMar-Ant1 161-1227 via genewise with Ant1_ApNi_tp, 1 intron (981:1036) [Ganoderma lucidum]
MPRRSVSRDIKDRIPVLRFEQGRSVEEICSVLGIKKSLVYATLEYHRKYGVSYNPLARKSGRHRHISGIIIPHIRSLLEE
RPTLYADEIQEYLATDHLLHVSIRTVLRTLCRMHWSSKTVTKIARERNEELRAEFCGYMAKLVTDPAQLMFGDESAVDAR
TSIRRRGWAPIGMRCVQRTCFVRGKRYSLLPIMTLDGLITWKIFEGSVTSEMFVDFLREFVVRSAEDSPLILYTDIVQIP
YTSPYPGPRSILVLDNCNIHHAEAVRELVEDQAWCKLVFLPPYSPDFNPIEMAFSKVKSKLRRHSNGEQHGVSDICDACR
TITPEDAAGYFRASGYM
>52548815_Archaeon#DNA/TcMar gi|52548815|gb|AAU82664.1| transposase [Uncultured archaeon GZfos19A5]
MDSSNPLIQHISLEKLKRLIREEKNKHIFQRLLFIHQLYLEDSVEKACKRMCISKQTGYNWLNQWNEQGYEGINPNFGGG
RPPKLTRKQKEQLKEKLKSKGAWLTPEVRALIRKEFDVVYSNRQVSRILREFKMHYAKPYAHDYRRPENAEELFTESLDV
AVGKVQGECIIGFLDQAAPQTRDNKQRFWSFGKPQIVKNTSRYRANTFGFYPINGKEVVEFMEHSTAEYVCAFLRLIRDK
NPKKHIILILDNARAHIAQKTRAFAESLRISLVFLPPYSPDLNPIELIWKSIRRKIPQIFVKSEWSFKETIRTTFHRLAK
KTTFMTGWLATFQPILSNLL
>Sola2-3_NVi#DNA/Sola 1507-3359 via tfasty with Sola2-2_NVi, 1 frameshift. [Nasonia vitripennis]
MSNIRSDRCCNPYDLEGHKGKDLRRISIGVKRSFPSFPDNAKICASCRKIKHPRMDEGLFDSSSFMNLTLNPHKAEQNIP
ESPGVSSSSSSRMEANVKSQREIELEDLLNGLKAKFSTLDINDPLRLTILTVVPDAWSLNKTSREFNCSRQLAKKARDLK
ASKGVLADTTAKNGRPLPNNTVVQIDNFYNSDEHSRIMPGIKDVVSVKNDDGRHLSQKRLLLSDLRSLYDTYSKLCPEYP
VSFSKFAQLRPKHCILAGASGTHSVCVCTIHQNCKLMIDSVNLNKLADSDMVLHDYKDCLRQIVCQNSDANCFLGECIKC
PGINEFDKHLKELLERENIHHVQFSVWTTTDRATLETQIRSSSEFVDELCEKLIKLKPHSFIAKQQSRYYQEKKENLEER
EFLVVLDFSENYKYVAQEASQGFHFNNSQCTVFPIVCYYKNGLKIEHKSFIFLSNSTLHDTAAVYTVQKLLDPELKKINS
ELSKVIYFSDGAKQHFGVRAEWHFHATAHGKGASDGAVFKREAVRASLLCKPNDAIITFEKLIDWAQKNSKNIHALSYND
KDHNKMTRFLNKRFDAAPPVPEILKKHCFIPINNTEMMIKRYSEDGATTTFSYQDFKQ
>Sola1-8_AP#DNA/Sola 1322-3156 via tfasty with Sola1-10_AP, 1 frameshift and 2 stopcodons. [Acyrthosiphon pisum]
MVMLVKKKKENxSVKGQSRQVRTDRCNKRNKGEEYKTGKGKVIMARKIKQLGSCRRKCNELFKDNDRKIIFEEYWSMGDY
AKRVSYVMALMNLKQKMTERKKVDISEKQRNKTFSREYFLRINGEKKKICCSCFLSTLGETKGFLNTVVAKCISSKSGIP
QNDLRGKREPHNKLSEQDLKNAKDHILSIPSYESHYSRRDTSKRYLPSHFTLSSLYEQYKQTTDTPIGRPKYEAIFHDLN
LSIKKPKKDTCNKCDTFHMRISLADGDEKVNLQIAFRDHLEQADIGYTSKAEDKEEAKTDDKKEKKVLTFDLQQCLPTPH
LETNVVFYKRQLWTYNLTVHDCSDNPAYCFMWSEVDGGRGANQIASCVAKHLYTWICVDLxLHGLPTKHVTLYSDTCGGQ
NKNSHMVAMFMSVIRYHNILEVIDHKFLLAGHTHMECDSDHALIEKKKKTSKTIIYHPHDWMQLVRQTGKKNPFIVTSMM
HSDFLNYSELLKNQLQMKKKIVMVKEFVWKNIKWLRFKKTELGILYYKETLDIDAPFKSLSLCSKGRSHYQLTPPLCYNR
PVPIAEKKKKDLLDLLPMIPNVFHDFCKNLPTDATLKETYPNNETDTEEENS
>Sola1-6_AP#DNA/Sola 1045-2910 [Acyrthosiphon pisum]
NKHFTHNIGSGCNVIVDNSEVNTGLENADESNVLAVRTRKKRSNPKNWSYNLNKKNKLNGKEYYGKKKTNGVWSYNIPKP
AKVLKFVCNCKLSSKNTKLKCKKVKEEERLKIFEEFWKLSKNEKQLYIKNYTKIISTLRLRGTVTPSRRNSSIQYYLQTA
DDRVRVCKVLFLNTLGIGEKVCLKILSHKDSNNSISDNDIDSNFNPTEDTLNISNNQRSTKTTVTEKKSFLYKFLNSLPK
LESHYCRANTSKLYLEPNWTSKTELYNFYCNDYCTTHNTTPMSSYVFCKALEEQNIGLFQPKKDACDICTAFDTGNLSQE
EKEKHDSMKKEARMEKERDKMSENEIFTMDLQSVLLCPKSNVSSLYYKTKLIVHNFTVYDLKRKNGFCFLWNESEGGLSS
NEFSSIIIYFLQKYVINSNIGNLNSIILYSDGCTYQNRNSTLSNALLNLSINSNVTIIQKFLQRGHTQMEVDSMHSTIER
KVRNRKINVPADYISICKSACKKSPYTVEYLTHDFFKSFSSLNFCKSIRPGNKKGDPVVTNLKAIKYEPDRQIKYKLRFT
EEDWSTLKLKNSKHIAVKFDDLPQLHNDRLKIKKEKFEHLQQLKLTMEKDYHAFFDNLPKE
>Sola1-10_AP#DNA/Sola 1213-3155 via tfasty with Sola1-1_AP, 1 frameshift. [Acyrthosiphon pisum]
MINTIDRSSESLSCIVQVPVNSTVITENDTDFIIHEVVDYLIKEVCKKNKSRKRSCDPSSWESNIRKKRLASGMSYLSKK
GDKIIQCKQLKPPCVNCKKKCSEKIDEHDRKKIFCTFWDGDKDINLKRQYITTCIEEKCVDRKRERNGNRAGVRQKSLVY
SFEIENVNTGIKNKIDVCKTFYLNTLNISDMFVRTALKKKTHGGMVSLDRRGYHAPPNKISDDIRDGVKKHIKSFPAIES
HYSREKTVKKYLGNELNISKMYKLYVDNCKEHKVPTGNIANYWLYSEIFNNEFNLAFKEPANDSCDICDEFIIKIKNSTI
EEEACLQKNYESHLDEAKLRYAEKNKDKLEAKETSCNKKTIMVDLQKCLPTPYLTNGQSFYLRKLWTLNLTIHDDTLNKA
TCVLWDETKGGRGGNEIASCVLKWALQLKETESNIEELNIWSDNCAGQNRNFMIVTLYMWLLKKMPNLKIINHKFLLRGH
THMEVDSDHSIIERAKKKIEHSSIMTPWDWQKFIRSCKNKNPFEVINMELEDFLDFQCLYNSKNSPLIYRRKEVKISEIV
HLRLEKEKEGLLMFKTDFAEKEFKTVSLNRTTRSSVWPEHLPQVTSEPKPISKLKYKDLQTALKWVPRIFHDFYTNMKYD
DKIADYPE
>Sola2-2_NVi#DNA/Sola 1488-3497 [Nasonia vitripennis]
MCRRYIIFFFTNHKICIFVMSSKKSQHTDRCCNPYANLGNPHHKGKDLRMVSEYLRSKFPYLSDSDRICWNCRHEKYSCS
NNSIEISLSNACDTDSVHCDSFDQRNVSLSAADEQNLSSQSNTSVVEVTDNDVRSEREMQLEDMLTKLKEKFSSLQITDP
LRKRILTIAPEVWSVNKIAKEFNCSRRLAKQSKELRASGGILANTTAKAGKPLPDETVRKVKDFYMNDINSRVMSGKKDV
VSVKSGEDRCLEQKRLLLLDLRELHKLYKESEPKFLVSFSKFAQLRPKQCVLAGSSGTHSVCVCTIHQNVKLMLDAINIK
KLTEHSAKLLKDYKDCLKQITCENSKTNCLLGECNLCSNTVDLSRFLHQLLDSKGIDKVQYSTWVTTDRSTLQTQLFSSH
NFVEELCDRLTTLKPHSFISKQQSQFFEEKKNNLCIGEILAVFDFSENYKFIVQDASQAFHFNNKQCTLFPVVCYYKENQ
ELKHKSIIFLSDSLQHDTAAVYTVQMKLIPHLKKELSAKKIIYFSDGAKQHFKNKFQMINLIHHERDFRIKAEWHMHATA
HGKGASDGIGATFKREASRQSLLRKSTEPILSPLQLFQWGNQSMKNMILFFYSKQEHTKSQRFLNARFKKAPAVPQISKH
HCFIVEKGKILLSKRYSNASDGLNLIYKT
>Sola2-2_DPu_tp#DNA/Sola 1137-3050 via tfasty with Sola2-2_HM, 2 frameshifts and 3 stopcodons. [Daphnia pulex]
MNALKIRCEELQLKKRAADILSLLTLAPASWTLKQTENLSVSEDAVRRSRILKEEKGVLSTPDPKKARKIGDSENNIIQN
FYMDDEYSRVMPGRKDVKSVKKPGERRVRLQKRLLLMNIDELYSHYKDNAVKTLLMKPCGxTKFFQLRPQHVIEVGSAxT
HSVRVCEKHQNVKIMIDSLCKNMPIAHLFKDKLVCDIDNQDCMMxRCASCPPNIRLLEHLRSFTNERETIKFQQWESTDR
TALAVSELPTDDFLRKLVDMISDLTRHHFVAKKQGKYCRDLKETLKPNECLLQGDYSQKYSMTVQEATQGMFFNAPRQAT
LHPFLAYLNINGKIVPHSMCVFSDCLNHDAVSVNAFLKPVLQHIKIISPSIDTIKYFSDGAVGQYKNCKNFVNLLRHEED
FNIKYAEWNFFSNSHGKGPCDGIGGTIKRLAYRHSLQGGDIQTPFALFLWAEQQIENLKMFYVSSEDVNGNQKRLEGRLC
EARTLTGTQSFHRFVPSLTSKYHMDAYDISENENFKTFQILPIPDPCTSVEFNSISVGKHVACLYSEDGRWYLAIVLEKN
KEEQEFLLQFYKPPGESASIRGFKSTTNSKDQAWIPCVDVLKNIDSLEKTSRSGRTFKLSPTEYAQVSKLFTKKMQDS
>COP3_MT#LTR/Copia 80-4340 via tfasty with OSCopia2, 1 frameshift [Medicago truncatula]
MATPTTESTKFHPALAVSNIKNHISITLEIENVQYATWAELFKIHARSHKVLHHIIPPATGKSKGPKTDDEKELWSTLDA
AVLQWIYSTISHDLLHTIIEPDATAMEAWNRLRDIFEDNKNSRAVTLEQEFSSTNMEDFPNVSAYCQRLKELSDQLKNVG
APVSNNRLVLQIVAGLSEAYNGVATLIRQSDPLPQFYQARSMLTLEEAGLMKKVATSGGAAMMARETSDSPSLSKNYQQN
RNNHGGKHGQNRQNSGKNNGGRGSGKNSRGGGRGGIRNGGGQQQYDQQRPGQQQWSAGQWQWPWMPWGMPPCPYPSSPWA
RPNFQHGQHAQQHQPGILGSKPPQAYTAAAPLTPTDIEAAMHTLGLNPTDPNWYMDTGATSHMTSEQGNLSSYFNLSNNR
GIIVGNGHSIPIRGYGHTNLSFPNPPLTLKNVLHSPQLIKNLVSVRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESR
GDLYPITTSQAISPSTFAALAPSLWHARLGHPGAPVVDSVRKNKFIECNKASGSHICHSCSLGKHIKLPFVSSNSCTVMP
FDIIHSDIWTSPVLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFFSFRTFIRTQFEREVKNIQCDNGKEFDNRHFW
EFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRTLLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQK
EPSYSHLRVFGCLCYPLFPSTTINKLQARSTPCVFLGYPSNHRGYKCYDLSSRKIIISRHVIFDETQFPFAKLHNPQPYT
YGFMDDGPSPYVIHHLTSQPSLGQPAQHDLPNTQPTTQPTTPEEQHAHSPPSSSPNTSPSTTATPSPPYQPTPISVPKPV
TRSQHGIFKPKRQLNLNTSVPRSPLPRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHKEKSD
GVFERYKARLVGDGKTQQVGVDYGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFLHGELKETVYMHQPMGFRDPN
LPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSDHSLFIYQKGTTMAYILLYVDDIILTASSDALRMTIISLL
STEFAMKDLGSLHYFLGIAVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSANSSAPYADPSHYRSLAGA
LQYLTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTSTLISYTDADWGGCLDTRRSTSGYC
VFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHI
EMDIHFVREKVARGEVRVLHVPSRYQIADIFTKGLPLVLFEDFRNSLSVRQPPVSTAGVC
>BEL5_Cis#LTR/Pao 103-6066 [Ciona savignyi]
MATAENAAPVDSLIDVTPSAAELKAARTAALSTLTRLENKLQKIISKEASHKEVSKVKDHYDNACDDCLRICRQYVSTVL
TEGARTEAEARVENIIQRKQIANQDYRQFVQNCAAGRSVGSGSRSKSKASSSRRSSARIQAQLLEMEAIQMENEAEIQRK
SLEHEAEIQRKSLEHEAEIQRKSVELDLQVXRAKAKAKRAILLAEDGSELSDSLGALSNAEERPXETVLDKIQSFTWDQK
SRAAAADAAAPRPLVLQEPNLPNRHSSPFIPNPIPYGTGPSNYGVNHCERPAALGIGTIHDGRNLKETTLENPRGQFEVS
PFNADSVTPRLELDTFDGNILEYYGFMSDFREYIEARVLNDGARLKFLLKLCAGEAYDTIKGCKIISDRSRGYREAIHRL
NAKYGERNLVVQAYMKQVTEGPLLKPSDSEGMFLLADKMYNCYNTLSEWGYSHDLNSTENLGRIYDRLPNHIKLDFCKIS
RLKEAEDQRPSFFDLMELVQDSAKASRCYFNQRYYASTSGPSQSRKGNSEFKPKQSFPRKVMFAAAESVSEPIEHAGTTX
RRPLCCLFCNETHSIWRCNLFKGETVQERTNFVTARKLCFNCLRAGHFSRQCRYQGYCAICKRRHNSLLHIDETPSPSGD
PPPSNPELREKGVVSCGARQRDERKMRTPKSFKVVPVKVWTMDPGKSVQTYAFLDDGADISMCAVSLAEKLGLPSTNERM
DLYTQNAVSRHALICDDLFVQGFGESETFNVHEMLITDDLIDVSSSIPTEEVAALYPHLRDLNFPKLENGNVELLLGNNV
IDAFRLTEQRSGRHGEPLGLHTALGWTIFGADLPAAGRGKAEVSHACVQFMRQREPAGDSCNEILQLFSREFSDLAQEQK
CEMSIEDRQAIKMMEETATKVGKHHQIGLPWRQPRVTLPSSRLMALKRLKSLKRRLTGNPELFSEYRLKIREYISQGHAT
VVPRXELASSNAIWYIPHHCTGPKFRVVFDCAACFNGVCLNDNLLQGPDLTNNLVGVLLRFRQERVALVADIKGMFHQVL
VDPKDRDALRFLWWPDDDMDKEPVDHRMNVHIFGATSSPSCSSFALMRTAQENETGADEITTRTVRRNFYVDDLLKSCRS
VDEMLKLVAQIVPLLASGGFHLTKFLTNEKRVLSSIPVDDIASSMLTIDLHGLPXERALGVSWNTGTDCFEIKVNVTLRP
PTRRGILSMVSQVYDPLGFAQPFILPAKKLLQVACHNRLSWDEPVSSEQRETWDDWLQTLEGLQAISIPRCFRPPYEVHQ
IQLHLFCDASKLGYGAVGYCRMVDENRKVHCSFVMGKSRVAPISPVSVPRLELTSAVTAVRLAALIKTELEYDIHDVVYW
TDSTTVLQYISNTASRFQTFVANRLEFIHRSTQPSQWRHVSTNTNPADIASRGLMPSEVHKAKIWFTGPEFLRQPEEKWP
ARPXVLPPLSEDHAEFRMRKGIVSSLTQAAPDKTTLQLLFERYSTFSALRRSVAWLLRFRKYLIWKSCRPRILHPSEFPW
TGYLSHTELEEALLSIIKVVHQEVFAAEMKQLPNHESFSTITLHSVRQLRKSPVLASLQKLSPFVVNGVLYVGGRLHKSS
LSAQEKHQIILPSRHIITDLIISYYHCRQGHSGTLHVLSAIRERFWILRGQASVRRVLRDCRKCKFWNARVGEQMMASLP
VARVSAGSPPFTAVGVDYMGPILTKLGRSQVKRYGCIFTCMATRAIHIEVAESLETSAFIGAYRRFTCRRIGRPKQIFSD
NGTNLVGAERELREGIRNWNIKQMHDAFLQDEISWNFNPPAASHQGGVWERMIRSVRKVMRSINGEKVLDDFGLLTLMAE
IERILNDRPITPISDDHRDELALTPSMLLKGAVDDSLPPDEFLKSDGYKRSWRAVQLCADKFWERWTKEYLPLLQLRQKW
LRPTRNLAVGDVVLVVDELKKRGVWPKGVIEHCTYDKTGLVRRVRVRTMMSTMERDVRKLCLLEAHP
>BEL2_DR#LTR/Pao 42-5837 [Danio rerio]
MQQSEHASWALPRPRRQVRQPTYLQDYEVSAVRPKSHTSRNFNLSLPVPSESVHSQQPHIQWRRPPETQAEYALDPENQY
EDISRGWPLNPKPCTQVDIEQSELIRGSNANSYTSLYGQRREPMLSALNQAPVAEQCDPLFESWPVSSMPVAEAPLMPEE
ENEEVDTPPPPRPSSNYLPEPTVEEHRVFTAIDRMMSELQLMRDRMTPNRIAQTHPHSTHQSHNSPHHSRGLEHNTWCQT
QQSGPNISSFGHPPSMHSTSRGPLPQPRVRPYMSQPQNARSREQSWVSTCQSGGEYRGPAPKIPQFIHNDPMEFSRFKLA
LTNLLPADAPELFKYQILVDHVKLEEACLIADSFINSPRPYTDTMNALTEKFGQPHHIALRRIAALMESPEIKRGDLMAF
ERFSLHVQSLVGMLQTLGPDGDVELSCGSHVARLLTKLPIEMRANFRRSRFHHPRHTPTLLDLAEWLRYESWCQGYDTTP
EPRTSRVTGLRADKRFNKPVATVLHGSESSTSNRAQSESQSPSSSKQKSHIKPYCPYCNNTEHFLNKCQAIQKLTREQIV
EWIKSHKRCWRCGRAHQASQCDLKRLCDICQKRHLRVLHDANTRPEESKAESCLVNTSLDVLYLDKPSSHARVLLKVVRV
TLQNGDKTLDTYAILDDGSERTMLLPEAVNQLNLDKRPETLALRTIRQEVQTLNGASVSFKISSTSKPKKTFQIKNAFTS
KRLGLADHSYPVASLKKRYKHLADLPLESFAFVKPLVLIGADYPQLISPVEPVRLGPPGGPAAIRTRLGWTLQGPAHLIQ
WAPTTQQCLHTSISSPTLELMQNVERLWKMDALPYQSTRLAVRSKEDKEALELLEVKTKRVQDAGIFRYATPLLRKQGVP
PLRAQKESVLPSLRALERRLARDPQQAEEYCAAISKLEEAGAIRRLTTSEVLDSAESYYIPHHVVRHNGKSRIVFNCSFP
YQGRSLNDTLLPGPTLGASLLGVLLRFREHAVAISSDIRGMFHQVQLLPEDQPLLRFIWRDMKRADPPAVFQWQVLPFGT
ACSPCCATFALHRHARDHSGVNNAVLHSVEHCFYVDNCLQSLPTAEEAKELVDQLRDVLASGGFELRQWASNVPDVLRHL
PAEVRSDSMERWLSHDEPGLPEPALGLSWHWGSDTLGYRSRPVEYKTLTMRNIYKVLARQYDPLGFIAPYTTRAKLIVQS
MWDKPRDWDDPCIPPDLQKAWTTWESELHWLPHIAVPRPYAPGLTEPMVVSRQIHVFSDASTKAYGSVAYIRTEDVQGRI
QVAFLAARSRVAPRRQHSIPRLELCGALTAAQLAKKIETELTIKTDKPILWSDSTTVLTWLHSESCRFKVFVGTRIAEIQ
ELTAGSTWLYVDTAQNPADDVTRGKALAELAVPNRWSQGPLFLHKPSTDWPSQPGELLEQDISEYKKVTLCGTISKANRQ
EAQGALTYQSWNDLMESVAQEAYGAANQDTCLTAEDYRRAEKSIFSRIQAECFPEELHCLKAGKAVPRSSRLASLSPELD
PSEGFIRVGGRLRRAEGLDTAFKHPILLDPSHHMTKLLIRDYDERLCHPGPERVFAEIRRTFWILRGREAIRREQHQCQG
CQRWKAKPSVPKMADLPLARLRLYQPAFYSTGVDCFGPFQVRIGRRSEKRWGIIYKCLTTRAVHLDLLHAMDSDSFLMSL
RRFIARRGSPAELYSDQGTNFRGGEKELSEWFSRMSPDLQQLLAKQKIAFCFNPPAAPHFGGTWEREIKSVKMALNTVIG
AQPISEEVLRTVLLEVEAILNSKPLGYTSSNVADLDAVTPSILLMGRLDGTLPPVVYPKSEGLSRRRWRHCQVLADHFWA
RFIRCYLPTLQCRQKWRDTQANLTNGAVVMLMDPQYPRALWPIGRVIKVHPSVDGCVRSVDVQVKDRVYTRPVARLILLP
AIPAENVEEMA
>BEL6_AG#LTR/Pao 65-5266 [Anopheles genus]
MTRTPRTSRTPTVKPAPQPGWVDVIVAVRPHVHMRDLAYGELIRIRDNIVQAKEEGKALTAVQCKVFGKKADSALEEHNK
HYGEIIKHDESEVHDAKFKETVKLHEEVMMEIESASEALAAQSISPKALIPAPSVSSVIVNAPLPRPIPSFSGKYEEWAR
FKTIFKDIVDKSSEDSRIKLYHLEKALSGEAAKVIDEKTINDGNYERAWQLLSERYDNKRRMVDLHISGLLNLKKVNEES
YVGLRGLVESVESHVENLKYLGENFTGLSCAMVIHLIANALDIETKKLWEASVPRNELPCYEKTLCFLKERVSVLERCQG
NVAAGQRGRFVSKGPSSSGVTPMRSNAATTVCSVVVCELCKGAHETFKCSELMRLHGKDRESFIRSKRLCLICLKPGHWR
NRCKSHLNCNRCHGPHNTVLHWDNGPEPVSREPEQVSASQHVNNTDAAGSIVLLQTVLLYAELPNKEVLLCRAMLDSGSQ
ISCVTEALATKLGVNLVNVNVPVKGIGNIESSVKKKCTFTVKSRCSDFAMDVTCFVYREITGRIPSVYFDTSKWNLPDKS
MLADPYFNNPSCVDILLGMDCLSEIMESGSVKLAKTLPMMTDTHFGWVIGGRVAEIHKEREVYTNVVTKENLETIVQRFW
EVEDVTSERSVKVEDEICEEHFVKTHYRESSGRYVVQLPLRESISQLCCSRSVALRRFYLLETKLLKNPSLREQYQAFMS
EYEELGHCRVVDESEDDGSVKRWYLPHHAVLNPAKNTTKCRVVFDASAKVNGLSLNDVMMTGPKVQHDLLSIKLRFRMPR
YVVSADISKMFRQIKVDPCDSPLQRVFWRASPNEQLRVLELTTVTYGTAAAPFLATRTLLQLARDEREGFPLASRIIEEN
FYVDDGLFGANDIETVHAAQVQLIEVFRKAGMTLHKWSANDERLLESIPFEDRDALTKIGDCEANEIIKTLGLMWNPMND
EFIFLTKVPSKGRTPTKREVLSAIAKIFDPLGLISPVVVLAKILMQKLWLAKLDWDDQISEPLIEEWDNFLEALPTENQV
RIPRHVVSTNAVSLEIHGFADASLKAYGACVYIRSIERNGEAQLRLVISKSRVAPLSNVTIPRMELLAASLLCRLVKKVL
EALKDFNFETINLWSDSQIVLAWLKKPIECLNVFVRNRVAEINENRAFIWRYVRTHQNPADVISRGQSASLLVSNEMWWN
GPEFLRTCEIPNVCIDELNDDEIPELRNEVICNVIVPLKVLPILEKYESFRKTQRILAYIVRFKQNTKRRKGERINDPNP
TIPELRESMRWIIRAIQHQDLPEVVSAVKNSKPLQRYQDLNLFLDGELLRVGGRIRHANLAFGNKHQLLLPNRNVITHRL
IATIHRENLHVGPSGVIAILRQQFWVVNARSTVRMVLHKCITCFRSKPTTLEQQMGDLPSYRVTAAPTFQRVGLDFAGPI
MLKSGIRRVAAIKGYICVFVCMVTKAIHLEAVEDLSTGAFLSALRRFVSRRGIPEEIFSDNATNFVGAKNELRELYEMFR
KEATGQGIFQFCQEKEIVWKMIPPGAPHFGGIWEAGVKSVKSVLKKIYKSASLTITDFSTLLCQIEAILNSRPLYAHSND
PNDLECLTPAHFTIDRPLIGVAEPSYLDMPEGRLNKWQRIQQLRQQFWNRWQREYLCELQTRYKWTKIRDNVKEGALVLI
KEDNTPPQLWKLGRIARVFPGEDGLIRVVDVKTRSGEFKRPVHKLALLPVIDP
>BEL8_DR#LTR/Pao 492-6599 [Danio rerio]
MSDLGERPMDDRVNQQLATQPSVRSKVATETSDAVETELRRGKRTRKLTEKGQKLQEEKLERYEQRFKVSYDKWKSLVKE
VKWLLSESSSIESLQDVMARMTKASAVVGTGYEDLRHLSIPDHDTRRRVDHCEAVTKKMEVLVKHYFEGNKEMESGWSDI
ELSEEVSVGTRISRTSTSSQSKSRSSKFSSLSAAKKQEAAAEVAANEATLEVLKEQDRQFKELQKLEAEDKKRIAEQEAD
DLKRREEEAKVKAQHEVENAARRKLLEDKRRELERLETVKKLNAAKARMQIYEQSEVSEDDELLSDLSHDCEFKEIHVDK
RHHRPDNLSTKNVTLQPTVTTPQIDNTSLVKALTESMSVNRLPVPEPMVFNGDPLKFNDWKTSFQMLIEKKSIPAVEKIF
YLRRYVGDSVKKALEGHFLLGTDSAYCSAWKILEERYGNPFLIAKSFREKLYAWPKIGPKESLELQEFVDFLRSCEAAIP
QIKELEVLNDCNENQKILAKLPDWLTSRWNREVMETEENTKTFPSFSQFVKFLTKEAKIVCNPITSLYALKSSDKEGTRT
LKTRSSVGKVLATNSGGDNLVLVSCVFCQKNDHSLHKCHKFMEKTVVERHKFVYKKMLCFGCLKPGHQSRICQNRSVCDI
CAKNHPTCLHEDRSRSVGNHGVTESFKKSTDLYQHRHTRVLNEATSNQVMQEINNTCTSSIIPVWVSTTSEPEKEVLVYA
LLDTQSDTTFILEETTHALNVKKEAVQLKLATMASKITVVPCFKMKGLQVRGFYSKTRIPLPTTYSREFVPASKDHIPTP
QTARVWPHLEHIADVLAPRQGCDVGLLIGYNCPQALLPREVVAGEGNQPFAQRTDLGWSVIGHGNPCVDSGDIYGTSHQI
IVRQVMPSIPASVNLKTKVHYVCRTQIKEVVSPIDVIRVFESDFCEQESEDCCMSQEDLRFLGKMKAGTSLNKAGHYEMP
LPFKGDRPNLPNNKVCAVYRLKCLARRFKKDMQYYSDYTAFMNEIIACGDAEKVPPEEAEKCSAWYIPHHGVYHPKKPGK
IRVVFDCSARFQGTSLNDHLLTGPELTNTLVGVLCRFRKNPVAIMCDIERMFHQFHVKAEDRDYLRFLWWDNGNLEAQPS
VYKMKVHLFGAASSPGCANYGLKHLAAEGKGMFTEDVIRFIQRNFYVDDGLVSVPTEAEAIALVTEAKKLCSTGKLRLHK
FISNSKNVIASIPQEDLAKGVKDLDLDLGEMYVERALGVQWSIASDEFQFRVIVKEHPFTRRGVLSTIASVFDPLGFMAP
FILVGKKILQQLCYNKASWDDSLPEDLQSRWERWLLDLPNLADVKIPRCYVPQISNEAIRFELHHFSDASISGYGECSYL
RTVSASGEVHCSFVMGKSRVAPTKITTIPRLELSAAVVAVRVSDMLKKELDIKDLQECFWIDSKVVLGYINNDARRFQVF
VANRVQRIKLSTESNQWKYVGTEDNPADSASRGLMVEQLVASSWLKGPKFLWQKDLPSDEVKVGDVITSNDPELRKVQVF
NIQANKEKSLLERLLKFSDWARMVKAIARLKRYVREAKGFESKAFEPTTLEQRKDAELFIIRLVQEATFSHEMTSLKKQL
AFTSDAQTKSQLYKLSPFLDNQGILRVGGRLANATLHLDVKYPAILPRKNHFSALLIKHYHERVQHQGRGMTVNELRSNG
IWILGCSSAVSSHIYKCLKCRKFRRCVEEQKMADLPEDRVQPTPPFLLCGMDCFGPFYVTDGRRQLKRYGLLLTCMCSRA
IHIEMLDALSTDAFINALRSFIAIRGTVRQIRCDQGTNFVGASREFMSTLKTMDQGQIKKLGCELIMNIPSASHMGGVWE
RQIRTVRNVLTSVLDQCPGALDSTSLRTLLYEVMAIVNSRPLTVEHLNDPLGPEPLTPNHILTMKSMIVEPPPGEFVKED
LYLRKRWRKVQYLVNNFWSRWRKEYLLNLQQRQKWNKNRRNVKVNDIVILKDDVSPRNKWKLAKVVDVYQGKDGKVRQVK
LLMSDSSLDGKGKRLSKPSYLERPIQKVVILLEAD
>BEL7_DR#LTR/Pao 37-6021 [Danio rerio]
MSADGNPTSPSHARPLRQCQAPRYLEDYVLDSHHRPALTSSTVHSVMEEPKGAAAAVYSSQADVTSSQGRHLVTPSPSQA
DLLSMDSLTKLMETINEKDKEENAEMHSLLRKLEQLKKRKQRREEMMEHITSFIREEQGNENNEPVQSSPAPSNPSSPPP
LLSWDTVPQSEHQVAAGLSMGPEKSSHQMSAIVSRPTVGSHNAAYESVNQSRPQTTDLLFSPLSSGMASPVPHPPQSQLY
EPMSSQAPRPLPRQEQVSTDHLERSFHPLEPQVISPTPVYPRSMAPYGYITTPYSQMQLVNAPNSHNLAPPYQAMMSSTL
LPQNMFSGPMPSVSTAAVAPQLVTAQVAAPPNGSIPQRALYSPPKPKIPDFTNDSERDFANMKLALDNLLEPYPELTEKY
KYHVLLEHLKLPEAQMIGQSCRHHPYPYSAAMQALQLQYGQPHQLAQSEIAAILTSPDVKPNDGHSFQSFALRVHLLVSM
LLSLEGPRGMELNCCSHVDRLLSKLPKYLRDGFIEFLQQQGKLNALSLNTYNLQDFAGWLQVKAQQQRLSNRLMQRYQHE
RPSSIGKEKTQARTKGTSLVLYQGAAPNETALPTHPKENKQRKPLKVQCLFCNSKEHYITRCNNIKEQSVAELHKWISDG
RRCWKCARFHAPEMCNLKKPCSDCGRIHLQVLHRIAPNDQPNTSGTPESRIYLTPASVTCRVLLKVVPVLLHGKFKSVET
YAILDDGAQRTIVLPMAAQMLQLKGEPEVLTLRTVRADVTHLSGSKINLEISPKGEPNKRFQILDAFTASGLDLVEQSYP
VQRLQKLYAHLRGLPVQSFHNVRPLVLIGSDHVHLITADKPVHQGVKGGPVAIHTALGWALQGAEKSTPIHNSVQQCLFT
SASCTNDLLYRSVEKLWQLDILPYRNEKLVVRSREDQEAIKLLECKTQTINVEGVQRYATPLLRKPGAPTLLSTTRSVMP
TLRSIERKLQRDPEKATIYSREIEKLIKAGYVTKIRPDEISQSKEAWYIPHHLVCHNDKPRLVFNCSFRSQGQSLNDQLL
PGPALGPSLLGVLLRFRQYNVAVSADIRGMFHQVRLLPEDRPLLRFIWRDLQYENCPDVYEWQVLPFGTTSSPCCAIFAV
QQHARNNQESYPSALQTIQQSFYVDNYLASFPTTSEARVSVDQLRSLLATGGFDLRPWASNQPAVISHLPTEARSSAAEQ
WLAQNRTDPMEPTLGLRWNCAADTLGYHYRPIEHATLTMRTAYQILATQYDPLGFIVPFTTRAKVLIQQLWSKKRDWDDP
NLPQDLSRAWETWENELKHLSDITIPRCYSSIPHDAQQQYELHVFCDASERAYGAVAYLVEYADVIHSTFVMPRSRIAPK
RQQSIPRLELCAALAGAQLAKLLKEEITLKIQQIVLWTDSTTVLEWLQSDSCRFKVFVGTRVSEIQDLTEHSTWRYVDTQ
QNPADDITRGKPLQSFTIPGRWSQGPSFLNLGPEHWPKRPEPSRSEGLPDLKGTNICCLMTVVPDHTFPDATHFHTWKEL
VEATRQADGKATGSQPDTQLMDHRTAELELIKGSQAQSFPEETAALKMHKPVPNHSRLRCLAPEWDPVMEVIRVGGRLRR
LESLNAEEIHPIVLDPQHPTTKLLIKEFDERLLHPGTERVYAKLRRQYWILRGRQAVKHHQLKCSSCQRWRAQPKVPKMA
DLPPERLRILCPPFYSTGVDCFGPYQVKIGRRVEKRLGVIFKCLTTRAVHIELLNSMDVDAFLLALRRFIARRGRPKELR
SDCGTNFRGADRELREAFAAMESPLKERLADHQITFKFNPPHAPHFGGTWEREVRSIKTALRAAVGGQSVSEDVLTTVLV
EVEGILNSKPLGYASTDIADPDPITPNLLLMGRRDASLPQVTYASGEMGRRRWRHCQNLVDQFWTQFTRNYLPTLQTRQK
WQTSSDNLKVGSVVLIVDPQLPRAQWPIGKVAETVISDDGCVRSANINVQGKVYTRPVARLIQLPAFQDDSKDS
>BEL2_Dpse_gag#LTR/Pao 5879-7585 via tfasty with BEL-1_NV, 1 stopcodon. Strangely 3-prime end. [Drosophila pseudoobscura]
MDTHMEAEAAATMEMDVQQEIGEDISRCIRNYKKDSQERKQTASYFQAKISALENAWNRFNKNDSKLRDTDKTDEYVKFR
EDLRTTCKQYIAMFTEGMDKLSQTSSARGERQIVFKERHENPPVAPKESGLIQQSSKDYSKLLSLCRRQKAIVESVKRNL
KQLSEAEGRTxSDLIKSLWTQAQEVHFTIHEEYEDPVEGGYDMEAYLTLESKVQRALAKSATPNTDNVQLPRISIPKFDG
DLLKWTQFFDLFSCMVRETNMPTVKKMWYLKTTVTGEAERLIRHIDLKEENYEAAWELLVDAYKNPRDVSNTVLNRFLNH
QTINDDPKSLKELYITTIESLASLKGLGINISTWDPILIAIMRNKLDVTNKALYEQSLGSSKDIQALDTMLQFLEQRIRV
LGTSKRPPASRREPKGTTCASANTGRARAPLCTFCKKASHWLYGCEEFRSKSPSERLNWVQKQKMCVNCFRTNHKTNACP
GRNCFKCDKKHNTMLHLETASGAATESRTPTVGAASNNSYNLRATAKVAVEAENGQVANFRALLDSGSQINLISERMASM
LSK
>DIRS-30_NV_gag#LTR/Ngaro 207-1411 via tfasty with SpNgaro1_gag, 1 frameshift and 2 stopcodons. [Nematostella vectensis]
MGLSISIYLFSYSFIYSFIHLFIYTLFIQFCFDVLGQASPILFYSFQMPPRRSTRKPKHTAEPNLVVEVPAPPKKRTRAG
RRTTEAEIIPATSTESATLVADIVRRVTAEVTQTVTSEVTRQLLPLIQQAQPAAIPDNPPVLPLEPLPAAIVEDSISSIQ
DALSGMEPNQSLLSIGVPIDHRVSVKLRSKICNNEFIDFGLLIDSSVKDRxISNHIVLSTxRGRPSVCFEPTSKPKRIRS
IDDWLSAFHVFVGLYLRKYPNEGPALMKYGDVIQDLAVRGQNWQLYNENFGSMRETRASAMPWDAIHSELWLRSQGTQTQ
RPTFKGAAKPVARHLSGMPKGVCYNFHRGAGCSGCDNKHTCYNCGASHPAFSCNFRPQNKFNRPQTAQSRNGTPNTSNTS
KK
>DIRS-23_NV_gag#LTR/Ngaro 171-1202 [Nematostella vectensis]
MPREKKCPGCKKPVNDHDFGVPGKHCDGPGGVPEIRGNSTTRNDELLNSLAAAVQTLTAEVQSLKADHASSRQSHSLPPS
DVASSSRSSKDVSPRRATTVTLPELRAMDDLADAADRRVAHVLPIASSESDEEADMGALASSPLRKPNKAGKLKSGKEDR
PTSEVVVKQLWPQRFLSLTRASQEITYERLTMAEFVAGYAQILQLREISSFERAERHKHLVTLMYHAQLYEWEAVLAFHG
AVLLEIERGLLKWGDSFSHLESRTLHGQLLSPPKKQSYSSGPTLFCRDYQREKCIHTKDHYGYVRGERKWVKHICAACWV
QSRKQESHREDSSDCPLSGESKN
>DIRS-30_NV_yr#LTR/Ngaro 2817-3833 [Nematostella vectensis]
IISLADGCFQAPGPRFHEYHTSGHSAGMAPTKLAAIVSELMHSSLQPSSRPTYKRAWVLFRQFLDDTFNTAQVSLPISPT
MLALFLTYLFDKQYAPSTVNTYVSALGYSHKLAGLPDPTKVFYIIQMLKGYTKLGSRVDCRLPISLPILRKIVSAAPSVT
GSVFQETLFRTMCLTAFFAFLRVGEMTVNQKEANLPLQLHQLSPILNSDNKVTGYKVSFQDFKHSYNQPTFSITINRQKG
ICPVTALTEYLRLRGSRAGALFLGIDGSPVSRSTFSSLLCQAIKYCGLDSSKYKGHSFRIGAASHVTNLGFSDAQIRTLS
RWKSNAFLRYIRIANISN
>BEL1_Dpse_frag1#LTR/Pao 2951-5438 via tfasty with BEL14_AG, 2 frameshifts. [Drosophila pseudoobscura]
MGKTPSFAPSLHSITQVRVEIFRTRTRTGVIKRSRQRGRRDDLTASQIAARQVINKDLPCFSGNPEEWPMFIVNFEQSTE
RCGLSDQENLMRLQRCLKGAALEAVREKLMMPATVRLAIETLRMLYGRPEAIYHTLQTKLRMEPSVKSSSIESLVRLALS
VQNYRATVDAIGLSAYLNDPMLLRDLVEKLPFDLKLDWARQSAGLPRVNIAVFDDWLFRVASCASTVMPVSPEKEVCTKE
KNPRVRLMVHNDSSAQPPCRRCNGAHKLEDCKQFLELEGPGRWNFARENKLCWRCLGKHFIRHCKSTRVCSVDGCSRKHH
FLLHNSNQQSSTEENRPKESTTLLHTMQNEAALFRYVPLTLYGPNGQMQVFALIDEGSACTLIETEITEKLGIDGPSDEL
CLRWTGDITQRDPIWISLAISPRDNVARRFTLQNVRTVKNLDLPKQTLDDSILKSHSHLEKLPILSYKDVRASLIIGLDN
VKLGVPLTVKERENSEFIAAKSRLGWSVYGRRKGDGPASPRVMHVCECNKHPQLDTLVKESFSLDAVGINMAKSTLRSKE
DERAKTILENSTRFSSEMKRWETGLLWRYDNVELPSSREMAMRRLRCLESRMTRDKVLREFVNEQIKRYEDIGYVRKLEK
DEMVGGKRSWYLPVFVTKNPNKGKLRLVWDAAAKVEGIALNSMLLKGPDQLPSLVGVISRFREKSIGICGDIREMFHQVR
IRSEDQSSQQFLWRYGDTSREPDRYVMSVMTFGASCSPAAAIYVRDRNAERFIEEQREEVEAILRNTFVDDWLQSCDSED
EMVRLALAVRNIHKEGGFEMRGWISNSSTV
>BEL#LTR/Pao 136-5378 via tfasty with BEL4_AG, 1 frameshift. [Drosophila fruit fly genus]
MRSVIQQRGFCKSQITRAHNNALKFVDDIHSVQTIVVRLAQLQENYLRFVRLSEELYAFQSEADWENPDEDFDAYEDKHY
ATHAILSNTLEELRRDVTSNSIDATVQAPGTPQRSHVDFQFERIKLPTFSGNYEDWKHFSDMFIGSIASNSSLTDCQRFH
YLKSYLAGDALALVKHIPVTNDNYREAWERLEQRYNKQSLIIRSFLNSFMSLPSAINSNIGTVRKIADGADEVIRGLRAL
NCEERDPWLIFILLSKLDSDTRQAWAQCAESEEKGVTINRFLKFLTSRCDTLEAFELTRSTQARRAATTHHADTHPRREE
PKCTSCQQNHQLFKCPQFIALDIASRRDFLKSRKLCFNCLSPAHMVGNCTSRHTCRICRRKHHTLVHGSSQPIQNGNNID
TASVDSRDRPAVSHAGSTIGHNQPLAREGHRLGSETPAENNFTHHTLENIPAAGSQTLLPTILADVIDAWGNTTTCRLLL
DTGSTITLASESFVQRIGVRRTHARISILGLAANSAGVTRGRAHIKLRSRHSGQTVELVSFILTSLTSSLPAQVIDTSSS
TWRQICELPLADPTFCTPGAIDVIVGSDQLWSLYTGDRKHFGNDFPIALNTVFGWILAGSYSAFDDHPTSAVTHHADLDT
MVRSFMEMDSIQPNQALLDASDPTERHFAATHKRSTDGVYVVEYPFKEKAPPIDSTLPQAINRFFSLERKFRRYPELKQQ
YEAFLDDYLQRGHMEKLTSAQVEESPDTCFYLPHHAVIKLDSLTTKCRVVFDGSGKDSSGVSLNDRLHIGPPIQRDLFGV
CLRFRQHQYVLCADVEKMFRGIKVFKPHTNFQRIVWRTTENEPLLHFRLLTVTYGLAPSPFLAVRVLKQLADDHGHEYPA
AAHALLHDAYVDDIPTGANTFEELMILKDELIALLDKGKFKLRKWSSNSWRLLKSLPEEDRCFEPIQLLNKSAADSPVKV
LGIQWNPGKDVLYLNLKGCDATISPTKRELLSQLSRIYDPLGLVAPVTVLLKLIFQESWTSVLQWDDPIPESLRTRWRAL
VEDLPALTQCQVPRYIASPFRDVQLHGFADASSHAYGAVVYARVAVGCSFQVTLVAAKTRVAPIKPVSIPRLELNAALLL
SRLLSIVKTSLTIPLFSTSCWTDSEIVLHWLSAPPRRWNTYVCNRTSEILSDFPRSCWNHVRTEDNPADCASRGLHPSKL
LEHRLWWKGPSWLATPTSEWPPSTSKFSVSSSFDVNTEERAIKPTTLHNFPDESIHELLIHKFSTWTRLIRVSSYCHRFI
HTLRSHHRNSAPFLTSEELLDAQRRLIRHVQQKSFAREYEQLENRRQLNAKSHLIRFSPFLDDYGVMRVGGRIEQSTLNY
NAKHPILIPKDTPLAGLLVRHFHVSYLHTGVDATFTNLRQQYWILGARNLVRKAVFQCKSCFLQRKGTSNQIMGELPIPR
VQASRCFQHTGLDYAGPIAIKESKGRTPRIGKAWFSIFVCLTTKALHIEVVSELTTQAFIAAFQRFIARRAKPTDLYSDN
GTTFHGGKKTLDDMRRLAIQQAKDEELAGFFANEGISWHFIPPSAPHFGGMWEAGVRSIKLHMKRILGSKALTFEELSTV
LTQIEAILNSRPLCPTGDNSLDPLTPAHFLTGSPYTALPEPCRLDMQVNRLERWNQLQAMVQGFWKRWHMEYLTSLHERT
KWHLETENLKIDTLVVLKEPNLPPSKWILGRITAVHAGIDNKVRVVTVKTAHGLYKRPIAKIAVLPLC
>BEL11_DR#LTR/Pao 71-5950 [Danio rerio]
MSSSEKHSLRTRSACTRSSRHSSKSAASAAALEARAKAEAALTRATYAQKEIEVKVKQAQVQAQLKVEEARLEATLNALQ
QEREAEAAAAEASVFEAAADIRGTDQLSDNQDPHSSHNSLQRTKEYVEDQQKYKESYMPEFAETTEQKLVASNLVDVQQP
QPIEQDNSFQSLPARQSAIKIVTNAATPLIPTTQAGAIKKEGANTSLFKSAVPDALPPRHNASLTSPPHSHCNEHYNARS
EVFELAKFLARRDLLTGGLSRFNDKPENYWAWKSSFCNAIEGLDLKPSEELDLLVQWLGPESTEHARRIRSVHISYPDVG
LSMVWKRLEDCYGSAEAMEAALFNKLECFPKLSNKDHQRLRELGDLLLELKIAKAEGYLPGLTFLDTSRGISSILEKLPF
NLQEKWMLQGTRYKQEYGVSFPPFSFFCDFICGEARMRNDHSFKLTTQNVSLSRFEKYPKAIRAPVTVHKTEIDNATQRN
EFNRTNDNLNRQCPIHKKPHPLRKCRGFREKTLLDRKAFLRENSICFKCCSSTTHQAKDCKAVIQCSECNSDKHIAALHN
GPAPWLEKKDTEPSADYGGEQEEFLSPVATSSCTKVCGDPNSRKSCSKICLVNVYPEGEPHNKRKVYAVIDDQSNRSLAR
SAFFEMFKVEDNTAPYMLRTCAGIAKTEGRRADGFIVESFDGKTSLALPSLIECNLIPNNRSEIPTPEAAQYHSHLRSVA
SKIPSLDPKAKILLLLGRDLIQVHKVEEQCNGPLHAPFAQRLALGWVIVGDICLNGAHKPATVDVFKTHILANGRPSYMS
PCPNSMFVKDYFSLHNEPKPSLNPKQKTLSVSEECSIGESVFRCTKNDEKTAPSMDDLAFLKIMEDQFHQDESNSWVAPL
PFRSPRQRLPNNKVQANNRLMLLTRKLRKHPEVKEHFVDFMGKIFENGHAELAPQLQENEECWYLPMFGVYHPKKPGQIR
VVFDSSAQHQGVSLNDVLLTGPNANNSLLGVLLRFRKERVAVMADIQQMFHSFVVAKEHRNFLRFLWYANSDLNSEVREY
RMRVHVFGNSPSPAVAIYGLRRAALTGEQDYGFEARHFVERNFYVDDGLTSFPTEEEAIKLLKDTQEMLAQSNLHLHKIA
SNKVEVMKAFPSEDLAKELKNLDLNTGLSSVQRSLGVSWDMSEDVFIFQVADQMRPYTRRGVLSTINSLFDPFGFAAPVV
IQGRLLLRTLTTESCDWDAPLSSEKFKEWKIWRDSLKKLELVKIPRTYATISLHQAQRREMCVFCDASTNAIAAVAYSKI
TSISGNVEVGFIFGKVKLAPRPEISVPRLELCAAVLAVEIAEIIADEIDIKLDVVTFYSDSKVVLGYICNRSRKFHVYVH
NRVQRIQRSTHPEQWKYVPTDQNPADQATRSVPAADLSHSMWLTGPRFLFNTTQETSHTGPFAMIHPDLDIEVRSQVISC
ATHTSKRDLDPKRFERFSSWHTLVRAIARLVHITHSFQKDNDKSTCRGWHICDKPCSVEDLERAKSILIHSVQAECYSEE
LKCLKGGRGIPKQSPLCNLTPYVDELGLLRVGGRLSQASLDRDEVCPIILPGQCHITSLLIQHYHKQVEHQGRAFTEGAL
REAGFWIIGGKRRISSVIFQCVKCRRLRGKFLTQRMSDLPPERLSIDPPFSFVGVDIFGPWMVTSRRTRGGQANSKRWAV
LFTCMSTRAIHIEVMESMDSSSFINALRRFFAVRGPAKQLRSDCGTNFVGACKELKMEAITDDRKVQEYLSNKSCIWIFN
PPHSSHMGGSWERMIGVSRRILESMLQGIALSKLSHEVLITFMAEVTAIVNNRPLVPVSTDPDAPLILTPATLLTQKSSA
VLPPPGEFGEKDLFVRQWRQVQSLANTFWNRWRKEYLATLQNRRKWQNESSNLQVGDVVLLKDSHARRNDWPMGIVMETF
PGRDGRVRKVEVKVVKDGVSKTFLRPISNVVLLLSPKTE
>BEL34_DR#LTR/Pao 77-5984 via tfasty with BEL3_Cis, 1 frameshift. [Danio rerio]
MDKSQPSKNVEEANQALEIESRSGRSHRSTRSSASAAATTARAKAAACKVKASYAEKEAIMMREQAQLEEHQQRTLAETA
RRKAEVEAELYVLKLQKEAVAASKEADVYAAAAIGEEELGEDLEKLSCISSRIERTREYVQTQSQLPNTPNLISNLQHEG
ENSQYVTRSYNEGSLSSHSPTKKEESKSEIIPIKKELTVQHSLQCSPSKVKIDPYSGDDEERHQIYPVRVQRESDPLSQE
NAGCSTPAPHVSDFTTYLLRKEMVSSGLFQFDECPENYWAWKTSFQAVTSELNLTSREEIDLLIRWLGPDSSNHAKRIKS
VYVSNPTSGVRVIWRRLEECYGCPEVIEQAMLKRLDVFPRITNRDIHRLRDLGDLLLELQSAKESGRLPGLAYLDTARGV
NPIVEKLPFGLQDKWITQSSRYKEDHKVYFPPFEFFVEFVCRQARTRNDRSFAFASSSSLSSSKADGAARISSRASVFVK
KTEIKTAQSNQEGTLENNVEPNKVCTMHNKPHPLHKCRTFRSKHLDERKAHLKEKSICFKCCGSTKHVAKDCIALIRCRE
CNSDRHVAAMHPGPAPWSVTTWSIETPESKTEQIKEKTDEDTAEVTNKSEICGDVDKPKSCSKICLVKVYPSNQCEKAKR
IYAVLDEQSNRSLVKSQFFDLFNIDSSSSPYTLKTCSGIVSTAGRKITGFSVESLDGKTVVALPPLIECDSLPDDRSEIP
TPEVAVHFPHLTVVSDKIPPLDPNAPILLLLGRDVLSVHKVREQRNGPHNTPYAQRLDLGWVIVGEVCLDGIHRQSSVNA
YKTNVLLNGRTSYFPSCTKGINVVEKAQSPLLSYIPNPPCSLKSNESYSINLKEDVFFRSPDDDKATLSVEDKVFLEMMD
KEVYLDEDRHWVAPLPFRSPRIQLPNNREQAMQRLSSLQRTLSKKPKMKTHFFDFMQKEIEHKQAELAPPLHSEEECWYL
PIFGVYHPHKPDKIRVVFDSSAQFRGVSLNDVLLSGPDLNNTLLGVLLRFRREKIAVMADIEQMFYCFKVKEPHRNYLRF
LWDKDNCPEKEIIDYRMTVHVFGNSPSPAVAIYALRQAAEHGKVECGTDAKNFVLRNFYVDDGITSVPTEREAIDLLKRT
QTMLSKSSLNLHKVASNSASVMEAFPSSERAKDLKDLDFSKDTIPLQHSLGISWNLKTDCFMFKASQECKPFTRRGILST
VNSLYDPLGFVCPITMQGRALVRELSTIQQDWDTILPLEKESSWKAWISSLAELDQLQIPQAYVPTSVCRAPLCELCIFS
DASTLAIAAVAYLRVIDSNGQPHVGFVMGRSKLAPFPAHTVPRLELCAAVLAVELMEFIKGEIDLELHDIHFYTDSRIVL
GYIHNVTRRFYMYVANRVARIRKTTEPNQWHYICSEQNPADHATRFVPAANLPLTNWYSGPEFLRKCGPVRCNVDESYGL
VQVEEDVEIRPQVKVLATSITEQSLDSSRFQRFSRWKSLVRAVTTLTRITKSFSQSSPNSPCRKWHLCTKTSDVETSQAK
STIIKTVQREVFREEFESLTKNGKISQCSTLLRLDPFVDKEGLLRVGGRIQCADISDPEKHPLILPSSHHVTDLLIQHYH
DQVAHQGWHFTEGAIRRAGLWIVSGKRRISNIIHKCVLCKKLRGKMESQKMSALPPDRLSVDPPFTYTGLDVFGPFTVVT
RKTRGHNIENKRWAVIFSCLSSRAVHLEVMESLSASSFICALRRFLAVRGPVKHFRSDRGTNFVGAVKELQIDSGDSELK
GFLQNQSCTWTFNAPHSSHMGGVWERMIGIARRILEALLIKSATRLTHEVLTTLMAEVMAIMNSRPLTPISTDASMPQVL
SPAMLLTQKASVAPTPPGNFELGHLHKSQWRQVQMLADSFWKRWKLEYLSTLQSRRKWTEERDNIQEGDVVLLKDGETKR
SEWPIGLVTKTVASSDGKVRKVMVKTAKQGAVREYLRPICDVALLLSSD
>BEL25_DR#LTR/Pao 45-5795 [Danio rerio]
MFPEQRIREGQRSDVRPKRRIQHPAWLEDYEVSLPQYNQQSPAAHTLPHQKPQEPYTERVAEMTPLIYQPQSDYALRADQ
RVINHSLHMRPRYESTPVSQPVTQEDVSEILRTVQELRRENQQLQFVMQDMQQKMSLNRAPLLQQRAEPLPYDRTQSKAS
PAPLHVNDEWPLPPPPVVDDGFLPLAGDIPPPLPRHMSNFVDELTSRLRNLKTKDHHLSCPSTPEYCEPESFSMALPPQQ
RTREYPMSKYPQTAPISSKPFCMDHELHPYYPQQERMYRGPKPTIPDFTKGDPREFARLKVSLDNLLPEDSTERFKYQIL
LEHLKFEDALLIADSYINSSRPYSDTMASLAEQYGQPHQLALRRIADLMEDPTIRSQDASGFKRFALKVRALVGMLNQLG
DSGRVELQCGSHVTRLLSKLPHDLRADFKRYVYPLNVRIPTLLHFADWLEYELKIQASGFEFLGGDRRERPDQRRDRSKD
FKSTKTVAVFHSTDPALNTTAPGESSLSAAKTQDKPRIFCPYCTNTQHYLNQCQNFSQLTKEQKTNWVKTNKRCWRCGRA
HQAAQCNLKTSCKVCKGKHLDALHELNERPVSENTCLVNNANEVLYLDRPLGCSQVLLKVTKVILRNGEHTLETYAILDD
GSERTILLQAAAQELKLQGKPENLALRTVRQDMKIIHGTTVSFTISPACQPHKVFKIHRAFTADHLGLAEHTCPATTLQH
KYRHLRGLPIPSLNSVQPLLLIGSDYPYLITPIEPVRLGPPGGPAAVKTRLGWTVQGPTKLVRHQLLTQQCLNISICSPS
DELFRHIEKLWQLDVLPYRSEKLATRSKQDQEAVDLLEAKTTRIDVNGTQRYATPLLRVKDMPNLQATKQAVMPNLRSTE
ARLAKDPIKSEAYRAEIQRLEEAGYVVEVPDEKLSKKEEESWFIPHHMVSHNAKNRVVFNCSFSYQGKNLNNLLLPGPAL
GSSLLGVLLRFREHAVAFSSDIKGMFHQVRLLPEDKPLLRFLWRDLKREELPRVYEWQVLPFGTTCSPCCATYALQRHIV
DHSQQGDNVRHSLERCFYVDNWLQSVATPDEAKELLDTGMNLLAEGGFELRQWACNFPNVIEHLSKEARSESSERWLNQT
ESDPQELALGLRWMCQSDTLGYQTRLDNCSTPTMRNIYKVVASQYDPLGFLVPYITRAKILIQSLWAKQREWDDPLLPTE
ILKTWHDWQGELQHLSQLTLPRCYVSSQLDSLNCKRQVHIFSDASERAYGSVAYLRSEDLKGNVEVAFLTARSRVAPKRQ
LSVPRLELCAALTGAQLASLLAKELTLPIESFVLWTDSTTVLTWLQSESCRYKVFVGTRIAEIQELTSAHAWRYVESNNN
PADYITHGKTLKELATDKTWRQGPEYLWNSPCYWPVIPDINAKENPAELKKPTFCSHVTVDVQPLPDPQQFSCFKALVEA
TALLLHGAAGKDGDLSAVDYQSAERNILRKVQIDCFPDDINALVAGKPVPSSSRLITLAPEYDSTVELIRVGGRLRRSVQ
LDADAVHPIVLDPSHKITQLLIQNIDKELHHPGAERVFAEIRRKYWILRGREAVKRLQHLCPDCQRWRAKPTVPQMADLP
QARLQIFKPPFFSTGMDCFGPFTVKLGRRSEKRWGILFKCLTTRAVHIDLLSSLDTDSFLMSLRRFISRRGKPSELLSDQ
GTNFKGGERELQQSFTSMCPTLQKELAKQQIKFRFNPPGSPHFGGVWEREIRSVKSALYATVQRQSMTEEVLNTVLTEIE
GILNSKPLGYVSTDIADPNPVTPNILLMGRLDPSLPQTVYHETELLSRRRWRHSQVLADQFWMHFTKHYLPSLQIRGKWQ
RERDQWQPDMIVMIVDPQLPRALWPVGKIINVFPSADGRIRTAEVRIRDRTYVRPVARLIKLPALPDMGTVSSPSE
>BEL-1_BM#LTR/Pao 135-5405 [Bombyx mori]
MATTSKSQSLFDRNVRKMRSKINAYYSRVQSIYDSITKINESNVDVFMSNASTLDMMRTEFIKSLDDLNDLLASNEDATE
PNYESMVAFDDLFSRIKYKYSELMSLRHNTQNTANTVVGENKIETYRQCPKLPRLELCPFNGELQNWPIFYETFKSIIHE
NQSLSDSEKIQYLIGKLTGNAQLICQGFMPTAENYSVLWQTLVNKYNDKRVLAASYFDTLLNLPVANDADPISLENYIDK
YSSLVSSLKQLKLECLEDFIFVHLGCKKISLELIKSFEMNYSDSDKLPTCTQFINYIRNQSHILQRAYNISNNNSIRMNK
YNSQQSNSNKPRNIRNNNVKTFVVHEQKRCIFCGVAEYHQLKNCSKFKSITPKERFSFIKTNRFCVNCLSTSHTVRNCTS
NEKCSSCSRSHHSLLHFITKGDSGEVPKSVDIATHTDGDQDNAMPDSLCACALEQQCFKTVCNQQPTKTILLGTAICNIM
DNSGTFLSTARILVDSASQRDLITLEFCKRLNLPIYPSETKQVCGVGDVKNSIEGYCCLTLCSCTEESVRITIQPLVINK
IIGELPTSKIDTSSLNYLKHIKLADDRFSQPRGIDLIVGSDVFSRILRPHIISRAPGEPVAIETSLGYIIVGQAPVLAPS
IDNSYYTHCTFGEDNLDNENNACIGNFLKLEDIPDVKPYTEQEEECESLYRQTTTRDSLGRYIVSLPFKDTPSKLGDSLQ
ASMRRYLSLERKLLLQPEMRQEYDKVIKDYLEKGYLNPCSRNINESSLQYVIPHHGIVRKDKSTTKLRVVLDGSMKSSSG
LALNDILQVGPNLQNDLFRIILNFRLFNVAISADIRQMYLRILVKDEDRKFLRMLYRFDPSEEIKLYEFTRVPFGLCCSP
FLAIRTVRQLVTDEGSQFPLAAPVADSDVFTDDLATSCANEETAVELSNQLIKMFHAGGFDLVKFSSNSPEVLSKIPSSH
REFEVIEFSPDSYLKILGLNWLPVEDVFTFTVNLRNRECTKRNILSVIARIWDLMGFVAPVTLWAKLIIKSLWANNIDWD
ETPRPEIVAAWHRFVSELPILENVRIPRHTGIVMECIVSLLGFADASEKAYGGVVYLHVYFPQTNKFTITLVCAKSRVAP
LRCVSLARLELCGNLILAKLMRAIIDSYSHRCKISNVFAFTDSTVALAWIHSSPARWHTFVANRVTKIQDEIHPRNFYFV
SGKENPADCLSRGLTPSQLMEHPLWFSGPRFAHLPISDWPVKNFDATSMTDIPEMKPAIMLFTTDDARNDNILYTLACRI
SSWPKLVRIVLYVLRFIQLVPSKFDISHLKVAETNIIKAVQRVHFDKELKNMKSGKILPSAFQRLRAFVHEGIFRVGGRL
ENAHLEFDSQHPILLPARDHVVNILIDYYHKKYLHTGPQLLMSLIRQNYWILSARNIIRKRVQQCNICYRANPRNQCPLM
ADLPACRVQETKAFYHTGIDYAGPLRIIPYRRRGVRSQKAYICLFICLVTKAVHLELSTDLSTAAFLNAFKRFIARRGPI
KVVYTDCGTNFLGTHSYLKEMYKLISSEQYADKFANELRDNNIDWKFNPPSAPHFGGIWEGNIRSVKTHLNKIVGNQLLT
FEEMLTTLAQIEALLNSRPLSVLSSDPCDPQALTPAHFINLTPLKSLPSETITEHSNLIQRKRIVDSLVQSFWKRWKLEY
LNTLQVRNKWKKDSTPIKTGTVVLLQSENSAPLNWPLGIIEETFPGRDGVVRVVNVRTKTGTYRRPVVKVYPLPTQ
>BEL-1_DPer_p2#LTR/Pao 6798-7742  [Drosophila persimilis]
MAPRIRASRTTESRRDRGINSYRCRVCRGIHPLRTCHHFLRLSPEKRLRAVLINKYCGNCLAHQHSGQDCRSGGLCRVCG
KNHHTLLHIPSSRRPVRSASGASSPSTAPHVKRRPRRPARSASAASSPSTSAHADRRPRLPVSRPVAGPPAPSVDSLLQH
RSLILLPTALVVLDTGSKNFETAALIDPCTPVSCIDDSLASAFKLPTTCVGDEKVCTAVIRAKMGDFQLETMLKVEPRVR
IRTPIRQLSDSVRARFGDLRLADEQFHRPATISLILGADVYPKVIQPGFLAREDGLPVAQSTVFGWIVSGACTQP
>BEL-1_DEl#LTR/Pao 558-5664 via tfasty with BEL-9_DWil, 4 frameshifts. [Drosophila elegans]
MTTPADTQLVSLRQQRNTIQRNIVNLKARIEPQNDLAALECQSQILESYFKQILQIQSQIERLDAADDGRQELEDIFIDT
KAIIITRIGATKKDRPEDASFFNSSVNYATGHHNRLPSLKLPKFDGKYGDYIKFITAFTSMVHDDASISAVDKFNYLLSC
LSGAALSVVAPFQVSEINYPKALKQLKERYDKKVLIFIEHISSLFDIQMMKRSDPAVLRCILDTVSALRESLLSLGTEAD
VMNAILIHLVLSKIDADSKLSYDRVQEYEVLPTWEDCYRSLSRHCQYLESNVKRSSDEKPKERPTQNRRAFVAAQGGCKK
CSATDHALTQCPSFSSLDWQDKFIFIKQSALCINCLRTGHLASRCPSRSRCRVCRRLHHTILHRTAHPEQPTQIVAHTSQ
QEQEPTHAVSMLSRHSRRALIPTAVVLIRDKFGIFQPARALLDSGSEINFISEELAKLLQLRFERQKYDISGIGDVRTQM
RFSVSTTIRSRLSVNEWHLQFAVAKTISLNQPERFVDTSQWNIPTEIDLADPGFYMPHKIDLLISTQEFFDLLSNGKISL
GPGLPCLVNTALGWIVGGKVSEIPQSQIVTCNMARSTELQDALERFWLIEEFDSHHNCFTVEEEECERHYLANTKFLTSG
RVQVCLPFKENPHKLGKSFEIAKSRFLQNERRLNRNPLLREMYVKFMKEYIALNHMQLASDFDSQKTHYVIPHHGVLRSE
STTTKLRVVFDASCKTTSNLSLNELLMIGPSIQQNLILTLLAFRLHRHALVADICKMYRQFEVSPDDRMYQLVLWRESSA
APLELFQLNTVTYGMSCAPFLAIRSLKYIADHFSKQFPIGAAVLKEEMYVDDLLTGADSVEELHLKAAEVTSILSKAGLE
LAKWNTSKIEGNGAEFQFKVDTKDVTKTLGMSWQPELDVLGIHYLHITVITKRSIVSLVAHLYDLLGLVSPVVIRCKILV
QELWMHRLNWDDPLPSELQSQWKRMIEDLHNLQTIEIPRFINSSPRNLSEIHGFSDASQRAYGCCLYLRTNLNGEFKSIL
IIAKSKVAPIKAISLPRLELCAAYLLCQTWAKVKEKFENYINNVFFWTDSRIVLQWLTMHSSRLNCFVANRISEMQSTTS
NIIWRHVPGKDNPADIVSRGCAASELMETIWFSGPSFLRQPSSGWPQPVQNSQDTEEELELRKSTVLTCTDSGSKEDVFD
YIINKFSSYRRILRVIAFVLRVFNRIKANRKLKVVDVIHTSATELQYAFKHIVSHIQQKTFFNEIQQLKENKILKPEFQK
LNPFLAATDGSNRSITLLRVGGRLAKAPISLDAKFPVLLPKDHCLTLKFVEYLHRQHMHAGPKALIGILRLQAWIVNARE
IVRKIVRRCTHCYHYKPRLMEQIMGSLPGDRFHSQRPFFVTGVDLCGPFATSYRIRSKVPYKTYMAVFICFSSKAIHIEL
ISDLSTNNFILCLKRFVSRRGVPLRIYCDNATNFVGARSQLEDFKQQLFDEANTLNVHNFSSIVGFEFKFIPPRAPHFGG
LWEAAVKSMKTLMIKNLGNTGLTYEELQTIAIEAEAILNSRPMAPLSEDPNDGEALSPAHLLIGSSLMSVPEPSIDESRP
SYLTRWQRVTYLKQQFWELWRRDYLHTLQARSKWLKPDANIQIGQIVIIHEDNTPPQEWILGRITNTHFGADGRVRVAEI
KVKNGTIRRPICKIAPLPEQIGA
>BEL23_DR#LTR/Pao 41-5893 [Danio rerio]
MEQSGEGFWAPHTRPKRQIRQPSYLRDYEVGAVRTKVREPIHNSPAHHTYREEHWSPQPHVRWSGAPTEHDDYTFHQDES
LGAMSLRGPCTPMPYTEEVIEQIVSHRESMPRQRADESLQHSYTSLPDTRRVGHPEKSSDRGRTVDQQELITEHWPLPPP
PLSDDFALLREEECDDRLPPPPWPSSQYPPASIVGEELRVVTVIDRMMGELQLMRDNATSSITAHSRLHSTPHDSGRPMP
SRRHEQYGAQSWLQQPESFPPIINSQRRTTHVEEPVSHFQPRPHQHRPNSYQGRQFTPVLTTLSGGDYKGPTPKIPLFVN
KDPMEFSRLKLALTNLLPADATELFKYQVLVDHLRLEEACLIADSYINSPLPYSDTMAALNEKFGQPHHVALKRIAAVMD
SPEVRRGDTAGFERFSLHVQSLVGMLQTLGPDGEVELRCGSHVARLLTKLPIEMRANFRRQMFNRHGHTHTLLDLAEWLR
YESWCQGYDNPTEVRFQRPPSYRVEKRHSKPAATVLHGSESYMPNQAIRPESQNSCVEKGKVKAKPYCPYCDCTEHFLNK
CPKIQNLTSEEVREWIRAKKRCWRCGRSHQAAQCDLKRLCSVCQGKHLKVLHDVNTLSKHEHAKAESCLVSTSTEVLYLD
RPTTTSRVLLKVVRVFLQNKDKILDTYAILDDGSERTMLLTEAAEKLGLQKKPEDIALRTIRQEVQTLKGSSVSFSISSP
INPRKNFRIVKAFTSPRLDLADHSYPIMSLKRKYKHLANIPLHPFSRVKPLVLIGADYPHLLTPIEPVRLGPSGGPAAIH
TRLGWTLQGPTPFAHWVSDTSLCLLTSVSPETTELMRNVEKLWRMDTLPCQSDKQAMRSRQDKEAVELLEAETRRVNVAG
VLRYATPLLRKRDIPPLKSSKEAVLPSLRSTERRLSRDPQRADEYGAAIRKLVETGAVKRIDPSEASSTEESWYIPHHLV
SHNGKNRLVFNCSYQHQGRNLNDTLLPGPTLGASLLGVLLRFRQHAVAVSGDIKSMFHQVQLLPRDRPLLRFIWRDMMRM
EPPDIYEWQVLPFGTACSPCCATFALQLHARTHSKEGDGVRHSVEQCFYVDNCLQSVDTVDEARKLVDQIREVLATGGFE
IRQWACNLPDVIKHLPAEARSDSMERWLSYDEPDLLEPALGLSWHWGTDTLRYRSRPLEYGALTLRNIYKVLARQYDPLG
FILPYTTRAKLIVQRMWDKPRDWDDPHIPQDLQEAWKEWESELHLLPHISFPRPYASTPHSQMIVSRQIHVFSDASEKAY
GAVSYLRTEDSQGQVSLAFLAARSRVAPRRQHSIPRLELCGALTAAQLAKTIARELTVVIDQTILWSDSTTVLTWLKSES
CRYKVFLGTRVAEIQELTGGSSWRYIDSLQNPADDVTRGKTLAELAGQNRWSQGPPFLLKGPEEWPSSPGKQPDLDTTEF
RKLTSCGMIARAERQETSQEQSFASWKEMVEATAQELHGAADGPPNAADYRKAEMMIFQKIQSDCFPEELCRLRTGKEVL
QSSRLLTLSPELDSDEGIIRVGGRLRRAEGLDPALKHPIVLDPAHTATKLLIQDYDARLCHPGPERVFAEMRRNLWIIRG
REAIRKVQQQCQECRRWKSKPLVPKLADLPLARLRLHKPAFYSNGVDCFGPFQIRIGRRSEKRWGIIYKCLTTRAVHLDL
LHNMDTDSFLMSLRRFVARRGTPAELLSDQGTNFKGGEKELRDSFNSMSLDLQQLLAKQKIDFRFNPPAAPHFGGTWERE
IKSVKSALHTVMGVQSVSEEVLYTVLLEVEAILNTKPLGYTSSSVADLDAITPNVLLMGRLDGALPPVVYSKEEGLSKRR
WRYCQVLADHFWSRFIKYYLPSLQCRQKWHGTPADLTVGTVVLMMDPQFPRAFWPIGRVIKVHHSADGHVRSADIKVKDK
IYTRPAVRLIVLPEIPESEEDEQCPPPTSD
>BEL17_AG#LTR/Pao 34-5562 [Anopheles genus]
MGPKRNDHCQACGDQRDDPDFVACDKCNLWWHFSCAGLTEPAEAVEQRKWLCVACQAKERSGLIQRTPVKHTEQMEAANA
NLNLEEVTQNVAEKHNLKLVEVIQQAAETPMPSSSGTSYNAVSKPNLTPAKVSDSVANRLAIMKRRQEAERKRMELELQL
KFVKEEEDLLSEELGVMAISGASTVTPSRPDGESMRGSQQDERGPAPRLESFHRNVPTELPEFSGDPAEWPVFIAHYDYT
TEKCGFSNWENMIRLQKALKGPALEVVRSRLVLPEVVPQVIATLRSRYGRPEHLISALIGKMRRMPAPCREKPDTVVAFG
EAVRSMVDHMQAAGLRAHLTNPLLLQEIVERLPTSEQYSWARHIRGVTEPDLIVFGEFMTEWMDDAETLTRLDSPSLKAV
DRKKPNTKGYVHAHVENQGATTSGTRAIQVGQSCFVCNKRGHLVSKCFAFGAMAVKDRWRKARALSLCFSCLERHNWRTC
QNRAVCSIGGCTRRHHALLHGAEESREIGSEQNNIESREGGIDGGVIAESNHHQYVSSSSKALFRIVPVTVYGPAATVTT
FAFLDEGSSMTLVDDDLAEQLGVEGKVEPLCIRWTGNTTRVEAGSRRVNLKVGPVGSTKRFAIHSVRTVPGLNLPRQSFV
QDEGRWQHLERLPIRQYRDAEPKLLIGLDNLRLAVPLRTKEGGVGDPIAVKTRLGWCIYGKPANLECERLLHICECNDQG
NIHETIREYFDMQLIGAAHGVEQDPDERRAKQILDTTTARIGKRFESGLLWRKDDIELPPSIDMARRRFNCLERRMERDG
HLKEQVHRQIRDLLSKQYVHKATLRELEEADQRRVWYLPIGVVTNPNKPGKVRLIWDAAAKAHGTSLNDMLLKGPDELSS
LLGVLFRFRLYAVAACADVKEMFLQIMIRKEDKHAQRFLWRYEPTDELETYIVDVVMFGSACSPATAQYVKNRNAREHME
QFPRAVEGIIESTYVDDFLDSFETEEEACQVSHDVREIFRNGGFELRNWTSNSMELMRCLGEANGDIKCLSSMGDEAERV
LGMRWNPASDELGFCTRACTTVSDLLIAERIPTKREVLRCVMSLYDPLGLLAMFVIHGKILIQDLWRTGTQWDEEINDMQ
LRHWRRWIDLLPAIADLRIPRSYFAAASKKMYENGEWHLFVDASQHAYACVLYLRIFDDAGEPQCTLIGGKAKVAPLKPL
TIPKLELQACVLGARFLRYTQEHHPINVRRRVLWSDSTVALSWIRSDPRNYKPFVAHRVVEILESTSVDEWRWVPTDHNP
ADEATKWKGKPNFDFGGNWFQGPEFLLHGEDDWPSQRHNSDNPSEEIRQVNLHVEDSNTGLLPIRYERFSRLERLQRMIG
WIVRYVGNLRRKYRGEPILGGALRQEELYEADKILWRQTQLEYYPEEVRILSLDDNDGKPGGRTVSKQSHIYHLLPFVDD
EGVLRMRGRIGAAADVPYSAKYPVILPRGSRLAELIVERYHRLYRHANNETVTNELRQQFQIPKLRALVTKTVKNCVFCK
IRRSLPQVPPMAPLPKERLTPFVRPFSYVGLDYFGPVLVKRGRSNEKRWIALFTCLTVRAIHLEVVHSLSTESCVLAVRR
FVARRGAPVEIFSDNGTNFLGASRQLRREIEERNETLAAIFTNAHTRWTFNPPGAPHMGGVWERMVRSVKAAISTVMEAK
HAPDDETFETVILDAEAMINSRPLTYVPLDPENQEAITPNHFLLGSSSGVKQQPVLPTNYRDSLKGNWKLAQHMLDGIWR
RWIKEYLPVISRQSKWFENVREIRKGDLVLVVDGTIRNQWKKGIVERIMAGPDGHIRQAWVRTNTGAVRRPVAKLALLDI
AT
>BEL15_AG#LTR/Pao 311-5536 [Anopheles genus]
MANAVNLLSRRRTLEEKIQRVIAFADNFVPERDEFRLGLFISDTERVAAEFDTVQQLIEDGAAPEAREMESHFRATTEDA
LMAARASLQALSRPSHNVIPASSTIATSGVRLPTISLPEFDGNEMQWATFRDTFEALIHCNEEVLTIQKFHYLRAALKGE
AAKLLESIPLCASNYNIAWKSLVDRYANEYLQKKRHLQAMFNIGKVTKESNASLHRLVDDFDRHVKMLHQLGEPTAQWST
VLEYVLCTKLPDETLRTWEDYASTLSSPNYSMLIEFLQRKMRTLESISMNHPATREATHPSFVRRAPQHLSSCSTMASSS
KGCPHCQHDHALSSCYKFCRLPLSERFQIAIEKKVCHNCLRKGHLARNCASSSRCKHCGERHHSLLHRSSAVGTEPKLVY
AEGQESTGRNDRYQAQSLNVTKHPIRSEEVFLLTVRLSIVDADGKEHSVRALLDCASQPNLMTEKLVKLLQLQRCPSNVK
ISGAGKISRDVRGSVFAEIRSKRQPFSCGVQFLVMDKLTSNLPSETVSVGHWCIPKGLELADPEFNTSQPVDLVIGVKHY
YSFFPSAARVHLGDELPLLIDSVFGWIVAGSATLQCPEPQVTSSNAICMMSLEESIERFWKTDSLVMKDGYSPEERRCEQ
IFRDTTARNETGRYIVRLPRHPDFGIRLGASKVSAVRRYDLLERRFAKNSKLKEEYHAFMKEYLELGHMSLVRDGDAVPA
ESYYLPHHPVFKESSTTTKIRVVFDGSSKTTSGYSLNDALCVGPVVQDDLLDQLLRFRTYKVALVGDIAKMYRQILLHPD
DRPLVRILFRFEPQQPVQTYQLNTVTYGLAPSSFLATRALIQLADDEGNAYPRAGPALRKNFYVDDFIGGAQSVEEATCL
RTELAELLQKGGFELRKWTSNCVDVLHGLDEAQVGTTTKMSFDSHEAVKTLGISWVPQGDWLVFEGVCQPDDDVITKRSV
LSAIAKMYDPLGMIAPIIIRAKMIMQEIWVSSRDWDESLPEDIVCKWKQFQKEIRSLSQYRMDRFILLPEARNIELHTFA
DASSAAYGACTYVRCEDAGRVRVMLLASKSKVAPLKNLTIARLELCACVLAAHLHHRIKGAIDVAVNASYFWTDSAICMH
WIKAPPSTWKTFVANRVAEIQHFTSGAKWRHVAGVENPADLVSRGMEVSEFNNSRAWRHGPAWLEHSQDAWPMPNPQSIP
EVAEQERKELISAVTVCHNELFLYWSSYTRLVNVVSYCMRFIAMLPHLRQLRGRRVLRSSEGNAQLKDVSSRKVLSARER
AAAVNALTRLAQRESFAEELRDLQGGKRVKKQSELKRLTPFVDEKGIIRVGGRLNLSQLPYQSKHPALLPKGHPLARLIA
EHDHKMLLHGGGRLLLSVIREKFWPLNGRMLVKSVVRSCIKCIRYQPTLAEQHTGQLPAARIIPSRPFAVTGVDYAGPLY
LKPAHRRAASLKAYLCVFVCFATKAVHLELVGDLSTDGFLAALRRFTARRGVPDHLHSDNGKNFEGARNELRELFATLTS
EAAQSTIASSCADQGISWHMIPPRAPHFGGLWEAAVKTAKRHLFRHLGSTRLSFEGYYTVLHQIEAAMNSRPLLPLTDDP
NDLAALTPSHFLIGSSLTALPDPDMTMAHTNAHEHLAKLQLLVQKFWKHWQKEYLQELQKDPRVARQADQIQPGRMVILM
DELLPSTRWPLARVIEVHPGPDGLVRVVTLRTIKGLIKRPIAKICPLPVEERGNNTLPAAT
>BEL18_AG#LTR/Pao 183-6140 [Anopheles genus]
MEHEHEXKAPPAVAQTNESQQPETGALDHRPLAPAADSLHFRSFAPTGQDWTVNSSLEIVDRARSSTPNAPLGAGLLLRX
PQQRLTSEVREAPASRYTPLANSTVADLGXLHRSSSETVPRLAHLPTTADVQQPAPSQGGVSAGTVPRAADGASGAAIED
MELXPQAQDGASAGTVLRTAVGASGAAISNVHQPTPSQTGTPGRTMADKLAESSEAVAALELRMRNLTRRKLELERRELE
FEEQLILAESKRIGDGFISMIDDEGESNKMVDWSRRGDSEGHSSHHPNVSPSSSRTVPPGNAQQGNDSVVSQQRQPRSGE
YLNIADGAVDTYPFRNSIGTTLMNVNQSQILARKASCKELPYFSGKPEEWPIFIATYETSTAACGYSDEENTLRLQRALK
GKALEAVQPCLLHASNLTSVIETLRMLYGRPEIIVHSLIHRIHQMPAPRIERLETVIDFGMAVRNMCATITASGLEEYKC
NVALMHELVEKLPHALRLDWARHRMQSSSATLSEFGKWIETQVKAASLITLPSLEFRPERKLDHKSRTHHMNIHNATGLV
SEGSQICLLCEATCVDLSQCEQFNRLNVNDRWATIRRLNACRKCLKIHTYGCKGKKACGKNGCEYLHHELLHNPERHSKP
NEYAVATASLNAHSEVTGDVFLKYIPVIVYGRDKAITTFAFFDSGSTGTFIEHSLIEELGLEGQPHPLCLKWTGNSERDE
TGSIRVSLLEISGVGQNSSVHIIPKVHTVQSLSLPAQTLAVTQLTKQYAHLQGLPIHAYENARPRLLIGIDNHHLVRPTR
YAEGGKYEPVAAKTSLGWIVYGPRNKNSNSVNIQAIHTIHICNCGADAEANLDAAVKNFFTLESLGIVKPLETLRSKDDE
RALGILNAESKFNGKHYESGLLWRFDDVKLPCSRDMAMRRYKCLQKRMSKDSVLAKAVIEKMRDYERQGYIRRLSPEELS
MKGSRDWFLPIFPVFNANKPGKVRVVFDAAAKVQGVSLNTYLLNGPDLLAGLLSVLYKFREHRVAIVGDIKEMFFQVRMK
PDDQRSQMILWNENDFTGSEPDVYAVAVMTFGAACSPSTAQFIKNLNADRFADKYSRAVKCIKEEHYVDDLLASAETDEE
IITLAEQVRHIHAEGGFEIRNWLSNSHRVTSHLQREASPEDKINMCSDDRTEKVLGMWWDTLTDTFTFKLSPKHDIQLLS
GGRMPTKRDVLRTVMAIYDPMGIIANFLMYVKILMQEIWRAGLGWDDVLSGRLAEKWSVWVAVLPTISQVRVPRCYRQFT
SVNAKIQLHVFCDASENGMAAVAFFRFNDGGIIECSLVGAKTRVAPIKFVSIPRLELQAAVIGARFAAAIIAQHRIAIER
IFYWTDSRDVICWMRSDHRRFSQFVAFRVGELLETTSVHEWRWLSTKLNVADDGTKWQKVPTADPDSRWFRGPDFLWKPE
CEWPVPEQYPTDTKEELRLHMMHHNTNTKPWIQLERFSSWNRLLRSVVYVLRFVSFIVSKRTARTTGPLTQGELEKAEYA
ILRLAQRDAFSQEIRRLTDARDASEQRCTWKSVLPKTSILAKLSPEVDDNGVLRMRGRLTNCPWVSESTKRPVILPRQHQ
VTALILADFHRRFQHINHHAAINAIRSKLYIPRLQAEFNRIRRTCQHCKNRDAKPEPPEMGNLPSERLAAYQKPFSFTGV
DYFGPVTVAVGRRVEKRWGVLFTCLTTRGIHLEAAHSLTTSSCILAIRRFIARRGQPLEFISDNGTNFVGASRELAEAWE
AIDKQRLAEEFTTPRLAWKFIPPGGPHFGGCWERLVRSVKKAMSEIRMSRLPTDEVLTTALTEIEAMLNSRPLTQVPLDS
ESELPLTPNHFLLGTANGEAPKAVFSDDIATLKTTWKVSEVMANLFWKKWVAYYLPTLTRRVKWHHQVRPIKEGDIVVIV
DPNLPRNTWPKGRVVAVIQSKDGQVRRATVATSTGIYERPATKIAVLDVQQENNTYPPETNSXQH
>BEL22_DR#LTR/Pao 95-5903 via tfasty with BEL3_Cis, 1 frameshift. [Danio rerio]
MTTETSSLKTRSCASCSSARSNTSSTGSAAAKARARAEAAKARLTFAEEEVNLKLQKAKVEASMEMLQQKKEVAAAVAEA
EALEAAIDEHSEKHSCKLSLNSVPLETTQRTEQYVIDQTKNLDKDLQLCDVPAKIEPSTSYSISGSQLKPEAKPFLLRHN
SVSFQLPDTTLKHSATSPANKYPTPSQQFGSQNSINTSNPLNSEYPMFQNSNDCSSNMNDFVRYLARRELVSTGLLQFND
KPQNYRAWKRSFQNATFDLNLTPSEEMDLLLKWLGKESAEQVEQIRAIHINHPQAGLAMAWDRLDQTYGSAEIIEHALFK
RIDAFPKIANRDYSKLSKLSDLLMELQSAKAEGDLPGLVLLDTARGIYPIIQKLPFRLQEKWASVGAAYKRHNQVPYPPF
AYFVDFVSQEADIGNDPSFSFVSYIDTAPKVEKAAWKSSKQHEIFVHKTAVSYGDCADTGGLYKQSDDCDKLCLIHKRPH
PLNKCRVFLEKSTDARKAFLREHNVCFKCCSSTTHIAKNCKTKVQCSECKSEGHNTVLHPGHASWKESNPATKHGGEGEQ
PLSQSQVDSKCTEVCGENQTDRSCSKVCLVKVFPAGQKDKAVKVYAILDEQSNRSLVRSQFFEVFSDQSPCAPYILRTCA
GVKESAGRRASGYEVESLDGTVCISLPSLIECNDIPNNRDEIPTPDVARSHTHLKSMAHFIPELDPKAPIMLLLGRDVIR
VHKVRKQVNGPHNLPYAQKLDLGWVIVGNVCLGNVHKPLTISTFHTNTIEPERPTLFKPCPNVFHVKETCKDFQIANHCP
TYPEAKFTCDVDCLGDNVFQRTKEDNQVAPSIQDATFMKIMDEGLRKDSNNSWVAPLPFKSPRPRLPNNRIQALKRLISL
KHNFERKPIMKEHFLKFMEKIFKNGHAELAPPLDEKEEQWYLPTFGVYHPKKVNQIRVVFDSSAQHNAISLNDVLLTGPD
LNNTLVGVMMRFRKEAIAFTADIEQMFYCFLVREEDRDFLRFLWFQDNDTSKDIVDYRMRVHVFGNKPSPAVAIHCLHKS
VQIDNFHVDSEVKQFVMRDFYVDDGLKSLPTVEATISLLKKTQEVLSKSNLRLHKIAANSKKVMEAFPSTDHACDLKDLD
FEEDTLPMQRSLGLNWDLHSDCFRFSVSDEVKPYTRRGVLSTINRLYDPLGFVAPVTIQGKAILRELTAVSGDWDAPLPQ
KMEDAWTLWRVSLSELANFSIPRVYTEISTSTAMRRELCVFADASIKAIAAVSYLKVTDDEGKNHIGFVMGKAKLAPRPE
HTVPRLELCAAVLAVELADLISVNLDLQFDAVTYYTDSKVVLGYICNETRRFYVYVSNRVQRIRRSSSPDQWRYVPTEQN
PADHATRFVSAAHLQKTNWLSGPNFLLTQGPDIQNTFNLVNPSSDPDVRPLVSTLTTTALTKQLGSERFAKFSSWEFTNW
AITRLIHIAHHFKTTEKENSSCKGWHYCKEFTMEESDRAINIILRAVQEEAYSHEIECIKRQERIPKSSPLHTLDPFIDQ
QGLLRVGGHLHLSSLNQREKTPLLIPGKSHIATLIIRHHHERVQHQGRHFTEGAVRAAGFWIIGGKRRVSSIIHQCVTCR
RLRAPLSIQKMANLPAERLSADPPFTNVGLDVFGPWNVSSRRTRGGLLYSKRWAVIFTCMSIRAVHIEVIESLDTSSFIN
ALRRFLAVRGPVKHIRSDRGTNFVGACKELQIPSNIDSKVVKTYLSDQGCTWTFNPPHASHCGGSWERMIGLARRILDSM
FLQLKDKLTHEVLVTFMAEVTAIINARPLVPVTTDPHESFILTPAALLTQKVNPVAAPTGEFGVTDLYKCQWRQVQHLSN
TFWDRWRKQFLPTLQPRRKWQSVHPNVNTGSVVLLKNSQVPRNEWPLGLVTQSFPSKDGKVRQVEVKVIKPGGSTLFLRP
VTEVVLLLSSESKVDE
>BEL20_DR#LTR/Pao 42-5768 [Danio rerio]
MISNSEPYPPDVRPRRQIRQPAYLADYEVHGSGFVKRAPVSNRLSEYANEAVAPMSANVSRSSSPTSQPSYTDDLILQDV
WPEPSGYESPGYDKQHFQVQQTSDIKSMCMQMKRDNDELRSSILPEILSALQGLKAENATLRQEIQQRSPSIQTPIPAPR
THLPPSVISHRSSRAHSGEVSTPQPARYEQLTEQMGDMTLNSRMSHVVDGHGVHSQRAHTYSAQPSGTGHYENVPLGPRY
HYLQTEREFSPASRPELVPRMEKLHTQEQIYRGPKPTIPSLTAADPRQFSRLRMALENILPADASERFKYQILTDHLELE
EALLVADSYCNSVRPYTDTMHALVKMYGQPHKLVLQSIAEVLESPNLKSGDVKSFKLFALRVRSLVSMLEQLGPEGVAEL
DCGSHVSRLQSKLPHELQISFKRYIHPLRITVPTLLHFADWLEYELQVQDDTAKAVMYAPPLPFKRREGRHEHKPSGRST
NILLGAGKPTAPTECRIPTLDSKPSSTKYREKSHAYCPYCDNSSHFLNGCLNFKELTKEQKEAWIRKNNRCWRCGRNHHA
SRCTLKALCKTCNRKHLLVLHDLNERVVSTSEETEPKENSCLVNTTKGTLYADRSVGSRRVLLKVSKVIIANGDASMETF
AVLDDGSERTILLHAAAQQLKLQGQPEDLILRTVRQDQQVLHGTTVSFTVSPVSHPHKKYHIQHAFTAERLSLAEHTYPV
AFLQKKYRHLAGLPLQQMDKVQPVLLIGSDYPHLLTPVEPVRLGPPGGPAAVKTRLGWTLQGPTQEVRRELSTHQCFFTS
VLPNTDLFAHVERLWQMDVIPYRNNKIVTRSKLDKEAISLLQENTVRVEVQGTMRYATPLLRMQSMPCLNMPKEAVLPQL
RSVERRLLKNPEQASAYQAEITRLKEAGYVAKLEPREADCSKESWYIPHHMVQHNNKNRVVYNCSFQFEGHSLNDFLLPG
PTLSPSLLAVLLRFREHPVAISSDIRGMFHQVRLLPGDMPLLRFLWRDLKPDLPPDVYQWQVLPFGTTCSPCCASYALQT
HVINHSQPGDRFREVIEKSFYVDNCLHSLHSPKEAKDLVDGLCALLASGGFELRQWASNCPSVITHLPPESRSSTCELWL
SQDQQDVHESTLGLQWHCQTDTLRYKHRARSSAPVTMRHIYRVLASQYDPLGYIIPYTTRAKILVQRLWDKKRDWDDPHL
PEDLLALWHEWEKELSGLEEISLARCYSLSEVDHASCKYEIHIFCDASEQAYGSVAYLRIEHKEGEVEVAFVAARSRVAP
RKQQSIPRLELCAALSGAQLSQLLNTELTVPIHSTTLWSDSTTVLMWLTSSSCRYKVFVGTRVAEIQEMTASAVWRYVRS
SDNPADDITRGKSLQNLSRDSRWSQGPSFLKLPSESWPEQPHLAAEGPNSELRKSSFSVLVTTTAPSAKLQHFNTLTECL
NAYGQELHGAAYTSSAELQKDVQRAVLRQAQAESFPEELRLLMSGKSVSSKSRLLTLSPELDAATGLIRVGGRLRHCEVL
EADTIHPVVLDPRHPVTLLIIRDYDERLHHPGTERLFAEIRRTYWILRGREAIRRYQHQCTECKKWRGRPEVPLMADLPL
TRQRYFRPVFYSTGMDCFGPFVIKIGRRNEKRWGIVFKCMTTRAVHLDLLSSIDSDSFLMALRRFIARRGNPHELLCDQG
TNFKGGERELNEAFAALQSELQNHLAVQQIKFTYNPPSAPHFGGCWEREIRSIKAALKVTIGAQTVTEEVLRTVLIEVEG
ILNSKPLGYTSSDVADLDPITPFCFLIGRRDVSLPQVVYEDSEILSRRRWRHSQLLAEHFWRHFLKYYLPDLQARQKWKT
EKKTLEIGDVVMIVDPQLPRALWPVGRITQVFPGADGRVRTANVEVKGKTYTRIVARLIQLPALPEDE
>TED_gag#LTR/Gypsy 390-1544 [Autographa californica nucleopolyhedrovirus]
MPHDPDVIFKALRLVPEFNGNPNILTRFINICDKLVEQYASAEPGSELGNLCLLNGILNKVTGTAASTINANGIPETWVG
IRSSLINNFSDQRDETALYNDLSLASQGNKTPQEFYEQCQTLFSTIMTYVTLHETLPTTIEAKRALYKKVTVQAFVRGLK
EPLGSRIRCMRPETIEKALEYVQEELNVIYLQQRNESSRAHSSPKMLPIPQQSPVTPFNTLGIHRPPVPNWPVPMGQRGN
QPPPQPFKFNVPNQYHNRMPTKTQQMLRAPPPNYHPQSNVFRLPPRNPPPNQIVKPMSGVQHFVPKTLPVMTGHDWRKSG
NPPPNNYFKTRELNVNEFYSSDDSYNSVDYYSEPGCDYYTDYYNNPYDYDTNEGYLLTLRMAKF
>TCN5_gagpol#LTR/Gypsy 126-4728 via tfasty with TCN2_gagpol, 1 frameshift. [Cryptococcus neoformans var. neoformans]
MTTPPTDKESLQRKIKQIEDERKREREEHKREMAELQAQMRGLLKREAEKRDLPPHNPATSSLPAKSESPHPPIMYDSLP
QPKYSFPVLSEHADAAAIHQHISKLRSIFTLMAAGYRYEPTAFEARKLAHAAQSLTGIRHLQFLEGDGLQCRTFDDWAKA
FKSAMLPLGWVSETEKKIYSLQPQLLRLDKIPLAIMDFKQWFALLKDSDSPMSEDVATHWLRNHMTPGLLAELERDFGGE
NQLRQASLAELLKHMEICATRLLRYQSAFAPIAPTRTPIAAVSXEASSPIDIAQWLNPRLPLPKGGAGRRARAHLASEQX
CFLCRQPGHKSPDCPKRKEPTAIAAVSTFDHEEAEFEQEEGEMFAEVLATHLAPELSVPPILLECRIGTNGSPFLALFDT
GATVTLVDPSLITTHQLQTYPSEQRRVVSLAGGARGPALQRRVGVEVCIQNQVFALHGYVMPLHARYKVILGLDFIRSHG
LLSGASRLGNLAPDLLGPVVXSVTTADGYXDLRLAILHEYHDIFPDNIGEVANYPPICDANSKVRHHINLTPGAIPFKSA
SYRSPHMWRQQLIEEIQKHREAGRLRPSSSPWAAPAFLVKKENGKFRFICDYRGLNKVTTPDSTPVPNVDDILHRAACGK
IFAKIDLSDAFFQTLMHEPDIEKTAITTELGLFEWVVMPQGACNSPATQQRRLNEALRGLLGDSCEAYVDDIIVWAADAE
DLDKRLRAVLAALRKSGLVCSPTKSEFFRHKVKFLGHVISANHIGPDPAKLRTIASWPLPQSVKELRSFLGLLQYLRKFI
PSLATHTRTLTALLPPTPXAEKAWEKQQRALRKGQSPKDVLSWVWAWSSEATAAFEILKAKVAEISGLRPLDYAAALSGE
CPIYLFTDASNHGTGAWLGQGPDPDHAFPVAYDSRSLSAAERNYPTHEKELLAIVRALKLWRPLLLDVPIQVQTDHFTLK
WFLQQRDLSERQKRWLGXLSRFDLRIDHISGVNNFIADALSRLGGVDDEQDGMETAEVSVAVLGLLGQDTSTITKVAQGY
AQDQVMGAWLQEEDRAPGVTLENVENGQDGVHQVLRWEGRLCVPDTSELREGFIXQCHDDVGHFGVAKTLEMVRRSYYWE
GMRQDVVDYVSSCAPCQTXKSTTVKPAGRLHSLPVPQAKFLDIGIDFVGPLPTSQGFDQLIVITDRLXGYVVLIPTTITA
NAREVARLFYDHWLSKFGCPRSIVSDRXSIFQSGVWRHVTKHIDTKSMLSXSYHPQXDGISERSNKSXIESXRTLTDIRG
RTWADHLQRIAXALNNHVXASTKHTPAELVFGKRLSHVPPLVADTPAKIAEALQFMVPSEDEWEAAARRMRLDEGEARDN
LLMAKHRQAVQANKHRRPDPIYKVGDQVLVNTRHVRHEYKSSSGFKNSAKFIPRYDGPYTIVKAFPNQSLYELDVPARAN
DTARRHVSLLKPYVVSERYHSSSPPLQPQVPAPPRPQVLEVLDIRTRKNTEEVRVRLVGEPALGKWLPRVEVELWDGFKA
AWEVYDGPDELLLE
>Tor3-4_pol#LTR/Gypsy gi|49035825|gb|AAT48684.1| pol protein [Oikopleura dioica]
PFRKTSIDLYDLGKPDAQNKRYVLSMKCELTCYYDGVTLSNKTDKLVSNGLLELILRYGVTGKILSDNGREFGPLTKALF
KKFAIEHVLTSAYNSRGNSLVERSHRTITQKLKVLGATRRNWSSHFPLVKFYLNNLPSKALNNLSPAECLYGRSLLMPLI
DTQYVQPLSSEGPYSQAISNYISKLHPSLAAYHYKRYSTALEGNNAKSLNLKVGDRALIWKPVLTDGKLSKVWDGPYVIV
KKLGQCSFVLADSSKRQKFRRHARHLRPIKEREPFEDSERNLESDQNIEKNNLDYTEFSKEFDPTIEYPYKWTEIPTPLG
GIPTPE
>WHAM1_TM#LTR/Gypsy 227-2869 via tfasty with Athila0_gagpol, 3 stopcodons. (WHAM2_TM and WHAM3_TM too close to include). [Triticum monococcum]
MHDTYDETTSMPNTTMPLSDFLEERLARAREVENIESDYEDESDDDESLVISEGYLFDQDASLAILACRDRYELKRLLIK
WNKESLRDKMKPDPAFATSPICVPDKDYEFSVDPYIITLVESDPFYGYESQTVVAHLTKLNDIAALFTNDERSRYFYILK
IFPFSLKGDAKIWFNSLDPGCVRSPQDMIYYFSAKYFPAHKKQAALREIYNFVQIKEESLPQAWGRLLKLLNALPDHPLK
KPEILDIFYNGLTDASRDYLDSCAGSLFRERTPDEAEILLNNMLTNENNWAPPEPALEPTPAPINEPIPKPTLKKRGVLF
LSPEDMQEAKKSMKEKCIKAEDVKNLPPIEEIHGLNSPPVDETYDLNYLFTEEPPDPDIPTQVVKVNSLYRYDKAEVPPT
KIANQCLDEFDNFMFKQDNFNAYFGRQLKxNAYMSRRLGDYMADIKGELKLVSKHASMVTTQVEQVLKAQKEVLNEMNSK
KNDYAVRVATRTGRMTxEPLYPEGHPKRIEQDSQRNNIDVPSSSKKKKKKNDRVVQTSSEPIAEPPDNPNDISMSDAETQ
YGNEHEPSKNINDDVHDDAQPSNDNDVEIEPAVDLDNPQSKNQRYDKRDFVARKHGKxREPWVQKPIPFPPKPSKKKDDE
DFERFAEMIRPMFLRMRLTDVHKTNPYAKYMKDIITNKRKIPEAEISTMIANYTFKGGIPKKLGDPGVPTIPCSIKRNYI
KTALCDLGAGVSVMPLSLYRRLDLNKLTPTEISLQMADKSTDIHVGICEDVPIVVANITILTDFVIHDIPEDDSMSIILG
RHFLNTAGAVIDCNKGNVTFHVNGNEHMVHFLRKQPQVHSINSIGKIPSIIIGGFEFLLPTVKKKYDILIIGDVHIPVEV
T
>Ulysses#LTR/Gypsy 5801-6301 [Drosophila fruit fly genus]
MVPVTNWPGSCRSLADHSISDLDAKDRLAVIRSQVKDHLHTAYERSRQRYDHRAPTAPSGTGTGSVEAQLRTKQLRQSLQ
CQVRPEVLEEPRRPSRGNQRLRVGRSPGTRARRLPRKRYTNIIVICSPPCQATAAAAPVPPFFFGSAKKKKYRLLVVGVA
YVGHRY
>TABARE_p4#LTR/Gypsy 5185-6390  [Nicotiana tabacum]
MLLQTTYQDKGTQTDESQESKDIFTILTTLSLQMESMGKRLQQLESQQHDYKNAELSQSEDSKLPEVEGDVGKLQKTHNT
VALYTAAGTSKQVSKKPHINVNLNTVFDKPFTSKKPREAIVIAPQTSTYANSLHHNKKVYNHITQTYIENIYKIQTFLNL
NPRSTTTTDPTQDYVTQKLQGYNRLIAQPKTKANLVKTCYNYGLLSTVYTHDGEEIIGIPELYKAFVTFKRITKGNLFFI
KFYTAPAEILYDEIKPIIQVIKIGLTRDMIIPEEIEKQPEIQKMEIPSFYANKRIIGIATIIQELANNYLQGNAIWSYYS
RDQLMIYANSKELRQGDMDEVQKWILSLLKPEMQPTTRALKKEFISNELLTRYCKLVGHKYPDHICSKCNGDDNYVPEVQ
LE
>SZ-4_gagpol#LTR/Gypsy 273-5108 [Oryza sativa]
MTKTRSSESLVDLEEMNEFRTNLALLKKDVADLKSLKGEVKEIKGLLLELCKQKSVVEGGEEVVTETAATKGTLGSSTEA
AGTSTGGIPRTAAPEVRFAIETNTVVPTAPMTTRSLSCPMGNSGVQGFGTTHPEPTVFTQGENHTGRMGNSDNGGQGFGH
TRPESTLFTQRENFFGEKNNFGFGPTLNRGVNRGVNQWNTGVHVIDPQMHLFGTAAREGNQYAEAVIKGPRLEISLFTGE
DPVDWLKQCEKFFEITGTPVDQWVNLAVAHLYGRAAKWFRGVGLPWQVITWPQWCAMVCTRFSTANTHEAVELFQNVKQY
GMTVEQYIDKFEEYMDLVRRDHPYLQEPYFTSCFISGLRGDIKHDVCGQKPQGLLESYWYAKNYEKAANSRKAAANFNRN
RLQTGGNTGKNVYNKGQPRQEGDKKEEKKCWFCKEPWFPRHQCKVKQAIHALLVENEESVEVEEDSVEEEEIKGEKQGEK
LPEQTENVQEELMSISQSAVYGLTRPDTFSVMIKVNGKKAVGLVDSGSTTTFMDSKFAIKSQCTLENTKMRKVIVAGGGE
LKSELIVPGMEYEIQGESFTNSFNLLSLERYDIILGADWIFKYSPITLDLRKREMKITKGGRELEIQDFTKPGKYFQVSN
KKMGKMIKKGALGCVIQINAITDQSNVEVGIPKDIQIVLQSFPKVLKEPKGLPPRRSCDHVINLKVGSEPPNLRPYRVPH
FQKGAMEDIITELFRTQEIRISDSPYVSPAVMVRKKDGSWRLCVDYRQLNAQTIKNKFPMPIIEDLLDELHGAKVFSKLD
LRSGYHQIRMAEGDIPKTAFRTHLGHYEYNVMPFGLTNAPATFQALMNQVLAPFLRKFVLVFFADILIYSKTQSEHLEHI
KLVMQALSANQLVVRLKKCEFGLDRVSYLGHIISSEGVSTDPKKISDIKNRKPPKNVTEVREFLGMAGYYRRFIKGYGVI
CRPLHDLLKKDGFKWGDTQQEAFELLKEKMCNSPVLALPDFSQPFVIETDACGIGIGAVLMQKGRPLAYFSKALGPKAAA
QSVYEKEAIAILEALKKWRHYILGGSLIIKTDQQSLKFMMSQRLVEGIQHKLLLKLMEFDYVIEYKSGKENLVADALSRS
PNLKEEQCLPITVVVPEWVQDIKRSYEEDIFAHKILSLIETDGDPERHYKLESGLLKYKGRIYVGETTEIRMLLLEAYHA
SYFGGHSGIRATYHRIKQLFYWPGLKKQVEHYIRECPTCQITKAEHIHIPGLLNPLEVPDMAWTHITMDFIEGLPKSQGK
DVILVVVDRLTKYAHFLALSHPYTVEQVVQIFMDNIHKLHGMPMVIVTDRDRVFTSNFFQEIFKTQKVKLRFSTAHHPQT
DGQTERVNQCLESYLRSMTFQEPQKWFSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQITEFAIPCNMSEEARVTLED
KALILQKLKSSIGEAQRRIKFYADKGRSERTLELGDMVYLKLQPYRQVAMGIRGSLKLRSKYYGPFKVIEKMGAVAYKLQ
LPDGAGIHPVFHVSQLKKHLGARAIPMPNLPAIGPDGQIKTEPAAVLQRRMIPRHNEPVTQWLILWENLTPAEATWEDAS
YIQAAFPNFQP
>SACI-7_gag#LTR/Gypsy 2-700 [Schistosoma mansoni]
ATKYAHIVGALPIDVATEVGDLIDNVPETDPYDKIKATVIHRTSQSDEKRLQQLLTACELGDKRPSQLLRHMRQLAGSYK
LDEALLKQMWLQRLPYNVRQILSISGASVSLDDLADMADKMIEIYPDSHGVSAIQSSNAENMSDALNIQQQITLLTQQLA
TLQATVATIHSRPPRSTSRRRSVSRHRLRSPKRAAGICWYHSNYGEKARCCTKPCNFKTNNPIYQGNEVARQ
>SZ-22_gag#LTR/Gypsy 1407-2867 via tfasty with CENTA_gag, 1 frameshift and 2 stopcodons.  [Oryza sativa]
MAGLRKGIREHRLLHLRRDMTTSPRDAYEVHDYNFEQVASKLPFYDGKFDSVAYIDWELAVDNEFDIYDFSDAQMIKAAS
NKFTSSALFWWTYVSNKPETxDELKTMMRKRFVTSYYKCTLWEKLEHLKQGDRTVREYIHEFKVCIIYSGLKECNENTMR
RFFNGLNSEIQVLLDNVTYNYIGHLFMLARSIESxIISKARMHDQCDLSPISESPIYLCNDDVQTLEEQSFVSPVTNVLQ
EDQHIQEKENGILEKKEDEAPTMSEESSQGKLNGAERNEGEYSQGELYLSTFHAIVEQPLVESIAELPLSQIDLLAVPCD
KEELCDNASLISMPQLVNEHAIPVVNTNCADFKHVVHIANRVEERELTYSLNTLGYVQFADFHELDNLKEKLFAKSDLPC
PSNTIFHLFGEYNDRGIYLVHRVYICSDLEPPVLVDKTCKLERNVIANKIISSLSCCDWKKQVVLNRLHEEHHMEKPRTV
FREEGE
>SZ-64B_gagpol#LTR/Gypsy 97-7772 (1 stopcodon and 3 kb insert excluded) [Oryza sativa]
MDSMESKLLEKLEGIIKWMHEIDQWLDSQGGSLEKVTTKVDLAMDFVGKVQQECAELARSMKRVANCSDQAGILGSPSGI
SQVSASGSATPPPLNPPVPPVLDGVDLGRGFGDGIYRRHQPLPKMDFPRFDGSDVRIWLNMCETYFDMYQITQNFKVSAV
VLHMSGNAAQWYHSYKLVNEVNSWDQFRMAVATEFEGVVEREKMSALDTLTQTGTVTEYKQQFDYLVYQIRVFDPSVGGK
MLVTRFMNGLTEEIRAAVVVQLPDTVQQSSAIALMQESVLASRATKALKGKFVKLPQYKSDVSSDTTPGQVDKGDLWKAK
QLKDYRRAQGLCFKCGDKYTPEHRCAVGGQIKAMQLEEVLTDDILDAVIAAEQSDDEEDCHISLNALTGAHLPTAILLRA
LVHSKVLLLLVDYGSSHSFIDYNFAQMLGLPLKPIPSTLVKVANGDCLPCQYVVPGFSWWIQGHTFTYDMRVVTLGVHDA
ILGMDWLEQWGEMSCHWANKTLKFQYQGSWISLQGVQDAAVPSEIAAVTLPQLLKWHKGCEIWATALLEHSDDVQHVIPS
SVQQLLTDFDDVFHDPKCLPPHRVFDHAIFLVPDATPVNCRPYRYSPLQKDEIEKQVKEMIDAGLITPSMSPYASPVLLV
KKKDGSWRFCVDYRRLNALTIKSKFPMPVVDELLDELSGTKFFSKLDLKAGYHQIRMVETDEAKTAFKTHHGQFQFRVMP
FGLTNAPSTFQCLMNSVFAPFIRKFVLVFMDNILVYSPDLDSHLHHLQQVFVILRQHQLFAKRSKCTFACTQLEYLGYII
SDKGVSTDPEKTAAMLAWPVPTSVTELRGFLGLTGYYRKFVQGYSIIARPLILLLKKKAFLWTAFDQLKTAMSNTPVLAL
PYFQLPFTLETDACAYGLGAVLSQQGHPIAYYSKTLGPVNQKLSIYEKEFLAIMMVVDKWRCYLQRGPFIIKTDHKSLCH
LDDEILGTELQQKAMTKLMGLQYSFQYKRGVDNIVADALSRMPSSSQFCALSVVQPIWIQEVINSYTVDPQAQQLLAELA
VHSPNSQGYSLTQGIIRFQNKIWIGSNAGLHTKLIQAFHASALGGHSGIAATYHQIKKLFAWPGLKLDVENFVKQCQVCQ
QAKHEHCRLPGLLAPLPIPKEAWQDISMDFIEGLPRSDGYNAILVVVDRFTKYANFIPLCHPFTASQVAHLVDKTVFKTH
GIPRSIVSDRDRLFTSKFWTTLFATWDTQLQMSTAYHPQIDGQTERVNQCLEMYLRCMTQANPKKWSHWIHLAEFWYNTN
YHTSLGCSPHKALFGVDPHYSQVPDLTLATLPDVVDVQTERQHLSEFLQQQLTRAQLRMKNKADKGRSDRVFAVGDAVFL
KLQPYAQSSVVNRPYPKLAYKFFGPFTVLERIGVAAYRLDLPASSTVHPVFHVSQLKAQVPDHTPVYTSLPSPVVLDAAD
VVPEAILERRLVKRGNAAHVQVLLKWSLLPADHATWEDYHVVKTRFPDAPAWGQAETPAGG
>SZ-63_pol#LTR/Gypsy 1617-4715 [Oryza sativa]
MMTTYPLPYQQFTHNYPPPPLPGQYWPMPQSFAPRAPLQLPAPPMAHPSASAPPHQQVSASTTPAIAGVYNMPAASSLGR
PDVVTGTLLVDSHDALVLFDSGATFSFVSIEFAKRANLFSQEVSRSVQVSSPGGIISSSVVCLGCAISIDGEEFVANLIV
IPLPLFDVILGMDWLNRYRAVISCFWKTITLEAPSGEEMVFQGSAPPHSLFVMSRLFPGQRAVKTGLLWALAEKSSKPLV
IEDVPVVRDYPDVFPAELPGMPPERDVEFRIDLVPGTQPISRAPYRLARPFQEELKKQLDDLLSKKLIRRSVSPWGAPVI
FTEKKDGSWRMCVDYRALNAATIKNKYPLPRIEDLFDQLKGAKVFSKIDLKSGYNQIRVREEDIEKTAFSTRYGHYEYRV
MSFGLTNAPAYFMEAMNSMLHSFLDNFVVVFIDDILIYSKDVEEHERHLRMVLGTLRENKFYAKLKKCEFWLPEVAFLGH
VINQQGISVDPSKVLSVVGWERPTNVKDVRSFLGMAGYYRRFVKDFSIIAKPMTMLTHKDVKFQWTDQCECSFQQLKQRL
VTAPVLTLPQPGKRFTVYSDASRVGLGCVLMQEGNVIAYASRQLKKHEQNYPTHDLELTAVVFALKIWRHYLYGESCDIF
PDHKSLKYIFTQKDLNLRQRRWLELIKDYDLNIQYTPGKANVVADALSRKVVSPTVSCLITDFERMDISYCYVGVASTES
RVILESVIPQRVLEAQQHDRLLQQVKKRVKEGKTGDFTLDSSGAVRFHGRLCVPQKAKVKEEILREAHRTPYTVHPGENK
MYHDLKKIYWWKRMKVDVAKYVASCGVCQRVKAEHKSPAGKLQSLEVPVWPWDDIAMDFVVGLPRTPRGKDAIWVVVDHL
SKVAHFIPIRTTYSASDLAPIYSREVVRLHGVPRSIVSDRDAKFSSKFWESVQEAFDTQLKFSTAFHPQTDGQSERTIQT
LEDMLRSCILSWKGSWEDHLPFVEFAYNNSFHASIQMAPYESLYGRKCRSPLCWDSIGERAILGPDWVQQTT
>XP_002123822_pol#LTR/Gypsy (fragment)  gi|198414690|ref|XP_002123822.1| PREDICTED: similar to pol polyprotein, partial [Ciona intestinalis]
MGAVLSQVQDGVERLISYASKSFSRAQKQYCTTKREILAAVTFTHQFRHYLTGQRFVLRTDHAPIKWIMNFKSPEGMLAR
WIAMLDTYNFEIIHRPGRDHGNADGLSRKKCGIEGCPECCPACNPNTGDCESHINQLFISPVHVESAPDWLDSWGPDVIK
NWQMEDDSIRRVIEVKEQDADSAEDIGGRAYVGQWNKLVLRTGILYRSVIYANTEVMQVVAPRRLQREIFHYLHVLRTAG
HLGTKRTMERIKHRFYWPGMTGDITNWCKWCRVCCQRKPLHGRHHSKLNKMLVGAPMDGIAIDFLGPLPKTSAGTKYVLV
VADYFTKWIECYSLPDQKATTTARTLAEEFFVRFGAPRHLHSDQGRDFESELFRNLCELFGVHKTRTSPYRPQKVGLVER
FNRTVGQMLSMFVNEERDDWDAHLPYLCMAYRSSVHESTGFTPNRLMMGREVELPLDVMVALPQRNHVPCYTTFVEGMRE
RSLLAFELARDTLQNTAVRQTRNYDKSVKPRSFKTGDWVWYFYPPRVKFKLGKGWTGPYLVVRVISDCLYEIQAGPECRE
RIIHVDNLRLYEAETLPTNWLLGLPEPLSGGTSPSPEPLWENVPNSSN
>CcNgaro3_gag#LTR/Ngaro gi|46194171|tpg|DAA01996.1| TPA: putative gag protein [Coprinopsis cinerea]
MRDGISHLLAVLERSPSSLLVPLSFSRLLWSLGSCISTLNLHLSLSPNFRAPHSFSLVEKFSFDMADGGAEGSGGGGEGT
GGAGGVAAAQDIRTRKTHADDRVSRLLSSMALHLKLQMNKRIEEENDQRTLKNLAAAQGNGSTSTLASEVTIPDDDIDDL
RDMTAWEAVKGFCSRGFTITMSAIHRRDREEEEERRRGMTLGEQDRGRSKKKRRYEEDSSDSDGDGMPQAKKALLYLDPA
DEQNFAPGGIQAKSVPFVLLNTEIVEPVPLRWLTESNWRWISEHSSKLPTTTAKVFNKIGATVSLTVIDVQKVLTQHGMS
SSQKTELAHLAEESPRNYGEFVATKANMLLLQSKRQQPGEDHQVRWYEQHYDNYLNRPEISEEGLFQRWIAQERRDRLER
RSYPTPYDKRVADLRWEVMLSSYRAEQDNRSFRNPTPPKGTTGPPSGSSGGRRASEFIARRKERNQAQQESSDCVVCGVT
GHTAKRHDFARAPRFRDGREFYVKKVGGSLVQTNAPYKEVCITWNAVGPDARCSHNLDERLHVCSFCGDGQHHALSRTCR
N
>SIV2_env#LTR/Lenti gi|27311173|ref|NP_758892.1| env protein [Simian immunodeficiency virus 2]
MLRYIILGIIVGLGLGNQWVTVYYGTPKWHKAETHLFCATENDSLWVTTSCVPSLLHYEEQPIPNITWNFTGPMEENEVV
MQAWGAISSMIDAVLKPCVKLTPYCVKMQCTKGKDLATPIPTTSTTTTTTTTKTVANTTELDIDTNNTETTTQQNRVCKF
NTTGLCRDCKLEIEENFRYEDVTCTNGTNNTYSCYMTQCNTSVITQDCNKASTDEIKFRLCAPPGYVLLRCLERLNVSKK
CTNITAVQCTQPLPATTSTMCGSSGTKHDYNELIQTNTKKGKEEFHDHKYVYRVDEKYNLQVVCRRKGNRSVISTPSATG
LIFYSGLEPGKNLKKGMCQLKGQWGIAMHDLAIELRKIDSSIWRNVTKGYCKGLKRKENRTGCALKTIKVSDYTTKGEPG
AETIMLLCGGEYFFCNWTKIWRTWNDQNSSVWYPWMSCNIRQIIDDWHKVGKKIYMPPVSGFNNEIRCSNDVTEMFFEVQ
KTEEGYIIKFVPQDEVQNRFTAVGAHYQLVKVDPIGFAPTEVARYHLPEARQKRGAVLLGMFGLLGLAGSTMGSVAVALT
VQSQALLNGIVEQQKVLLSLIDQHSELLKLTIWGVKNLQARLTALEDYVADQARLSMWGCSFAQVCHTHVPWPNDSITPN
WTSETWLEWDKRVTALTDNMTVNLQKAYELEQKNIYELEKLGDWTSWASWFDFTWWLKYVKIGLLIVIVIIVLRILACLW
SVLGKFRQGYRPLPYVFKGDYLRPHNLKQPGKEREEEPDSEKQSTKSDSSKVEFGKPWSKEQIRDWLKTSRGYVWLKNLQ
AVIEYGWQELKTAGGKIFKVLQGYAQGLWSRGHQWGLSTAACFRAIARGIINIPRRIRQGAEVLLN
>CcNgaro3_pol#LTR/Ngaro gi|46194172|tpg|DAA01997.1| TPA: reverse transcriptase/ribonuclease H [Coprinopsis cinerea]
GGRSCSQATGRSRTTGPFVTPLLRRAPPAPPVVLLAAEGRPSSSRGGRNATRRSRSPPTASYVASQGTPRSATTSPGRLG
FGTEESSTSRRSEEASSKPTPPTRRCASPGTQSAQTPDVATTSTRGCTSAAFAGTANTTPSPAPAETSADATFAQFERLA
SPQKLCYSDFSNTIVPRYCRSNQPEDIEIFNRICTPYDANAFDELLNKFELTNDYPNLVYNLRTGFPIGNMPRLNSTVII
PNHPSCMLYKQAVDDYLLGERNAGRMSGPYTRERVEEILGGPFFASPLIVSVQTQAPGTPDKLRICRHLSKGTKVDSSVN
SYIEKESFPTRFDTALRVADIISAAPPGTQACTLDIEKFHRTIPVVPPHKCWLVVQGDPGEFWIEHNVPFGCASASSNSG
MVANAGVDIIQASGAGPTMKYEDDLKNLRVPVAEGRIEDSGYTYDVPSGRVADILTYLGFPINREKGDGVYRPVVEFIGF
LWDIPRKVVSLPERKRSKFLRRVRDFLDAFDGKRCSRRDVERIHGSMCHVSFVHIDGRSRLPSLSNFAATFDGRDPKTAH
YPPTSVVSDLKWWAGCLEMAPRERSIRNRGPPMDHRIFVDASTSWGIGIVIGERWAALRLREDWKVKGRDICWLETVAVE
ILVYLLDSLGYRDQHILIHSDNKGTVGSITKGRSRNYHINHSVRRLYDLVLAVGLTPTLEYIESEKNPADPLSRGLPGPP
GKKLVTDIRLPPDIDKALYFL
>DIRS-22_NV_yr#LTR/Ngaro 2066-3019 [Nematostella vectensis]
NLEARCRELLLQGLAQSTRRSYASGQKRFIEFCSQIGKLHPSSGSPCPADEWTLCLFATYLSSSLQSSSINVYMSSVRAL
HIEQGFPDPLAGRLRLQRVLRGIKRTLGTPPSSRLPVTTEVMSMIHKHLDLTLFDHAMFWAACCLAYFGFLRASEFTVNS
SSIFSPDLHLSVPDISVDSMSNPTMLRIHVKASKTDPFRKGTHVFIGRAKPPVCAVEAVLGYLTRRGGAPGPLFVMESGQ
PLSRQKLTSWLREILQLEGVPGNYSSHSFRIGAATVAARNGLPDHLIQTLGRWTSGAYRSYIRTPVDVLAGASSKLV
>Copia-6_LBS_gag#LTR/Ngaro 4628-5929  A Ngaro element inserted in a copia? [Laccaria bicolor]
MSSSNETFSATPNSGPTPNTGAAPHTTSSGEQSSNQDEEHINSLASSTEGQNPVQQSGNVTGEGDPGMPGNFPVANAVLA
SCNDILKDFYSSRVSKGVALARIYTILLDGIPETEETGAHVEDAFERYLVIIENHQNHLNEAENRGRRQRSQSPANKGIE
IDDEEIPPPKRAKPDDTQYPWVVSDFIHGATLSPSLTTTLELLKLYAIDPKGTKRSLVNSPSCPEFPDSEWTNVLLGRAV
NLDAVLSGYYSTSNNDERIEEIGELEIRFGSVSPAKLVSSAGEWSIAWNRTSRAICTAFPHRAGELAEYAEYIIGVFAAT
DVHFHDRVISFDKAVRRRVGSRRDLELTNFNRFADLRSTHMDSIGAAVIQRASIAVANKSGSSSGRGKKLPEPCNRWNEG
LCTLENNQCRRLHVCNKCLLSGHTSKQDKCPPSQ
>JDV_env#LTR/Lenti gi|9628094|ref|NP_042688.1| env precursor [Jembrana disease virus]
MMEEGRKEEPEERGEKSTMRDLLQRAVDKGHLTAREALDRWTLEDHGEIHPWIILFCFAGAIGVIGGWGLRGELNVCMLI
VLVVLVPIYWGIGEAARNIDSLDWKWIRKVFIVIIFVLVGLLGGCSAQRQHVAMLLSPPGIRLPSTVDIPWFCISNAPIP
DCVHWTVQKPDQKHQQIENVMELQEVLDNATFFEVPDLFDRVYLELARLDANSTGVPVNIPPTGISQVKGDCSTGDIQGM
NETLSTRGTLGERTFLSIRPGGWFTNTTVWFCVHWPFGFIQRKENLSEGSAQVRNCLDPINVTEPRVANYSYCPLEYKGK
NYINKGLKCVGGRVDLSSNPEQHTDLLACGTFCQNFRNCDMVSRDILIGYHPSQQKQHIYINHTFWEQANTQWILVQVPN
YGFVPVPDTERPWKGGKPRGKRAVGMVIFLLVLAIMAMTASVTAAATLVKQHATAQVVGRLSTNLTYITKIQNQYLHLFQ
NLNTRVNNLHHRVTYLEFLAEVHEVQTGLGCVPRGRYCHFDWRPEEVGLNMTLWNSTTWQQWMSYYDQIEENIWNLKYNW
SEALEKGKSNTDGLEPDVFRYLADLSSSFTWGSWVDKLVWLAYILLAYFAFKVLQCIMSNLGAQTRYQLLNAQEDTDPAG
DGDQPDDHRSGDTPRSGVPSGGWSQKLSEGKKIGCLILRTEWQNWRNDLRTLRWLTLGGKILQLPLSLLVLLVRILLHIL
SPTFQNQRGWTVGRKGTGGDDRELSPELEYLSWTGSSQEMVEMRDLKEEDIPEEGIRPVEM
>XP_003391288_pol#LTR/Gypsy (fragment) Pos 1-470 of gi|340385581|ref|XP_003391288.1| PREDICTED: hypothetical protein LOC100640391, partial [Amphimedon queenslandica]
MATEGEEGLLEEAVLYLAEKKYSDGISNNRKRQIRAKAKKFVLKSDELYYNPGNNKPMVKYIKSRSDQKRIVKSCHLDAT
SGHLGVRKTVSRIRERFMWKGIWKDVKEMVSTCNECQRMNKPSIVTVTELHPVPIHSPWYHVGIDFVGPIHPISRRGNRF
ILTLSDYFTKWVEAIPLPSKSAVNVASSLHQVFMRMGLPKLLTSDQGGEFKSDLEKEIMRLLQIKRHYITPYHPQANGLD
ERWNQTLKAMIVKFTEGKKDQWDEYLPTCVFAYNTAKHESTLNTPFEVMFGRKANLPIDLDFEDAKGEQLLHDYETTGPS
EDTMSKLTATRKELLQTTKNNVAVAQERQKEQYNLKHVKAPRFQVGMKVLKKDFRRKKRKGGGMTYKWLGPYDVTNDVGK
GFYSLKDVASNAVIKRIHGAHLKQFKTPPTSPATSQSLSEDSSFVSESSASKDFSHNESWTTPSPLPPPI
>XP_002941161_pol#LTR/Gypsy (fragment) gi|301623719|ref|XP_002941161.1| PREDICTED: hypothetical protein LOC100497966 [Xenopus (Silurana) tropicalis]
MRDPTLCKAREGVKEINGEPQFPGAETVFPRMVLNQDLLYQVSKIRSEIIEQLVVPQQYRRVVLDMAHRHVLGGHLGVDK
TADRVLQRFFWPGVAGDVKRYCNSCPDCQINAPKPHYRGPLVPLPIIEVPFERIAMDLVGPLPKSARGHQHILVILDYAT
RYPEAVPLRNTSSKCIAKELVHLFSRVGIPKEILTDQGTPFMSKVTKELCRLLGIKHLRTSVYHPQTDGLVERFNKTLKA
MLKKAVDKGGKNWDCLLPFLLFSIREVPQASTGFSPFELLYGRHPRGLLDIAKETWEQGATPYKTVVEHIAQMQEHIAAV
LPIVREHMAQAQEAQSRVYYCRLRSATVRNFNPGDRVLVLVPTVESKFLAKWQGPYEIVEKVGEVNYKVRQPDKRKQIQL
YHVNLLKPWRQQEVLASKSVPLPHGDNLVPEVKIAETLSVSQKQEVKEFLMRNRDVFSDLPGRTNLIKHDVVTEPQVKVN
VKPYRIPKARRQAVSEEVRKILELGVIEESHSDWSSPIVLIPKPDGSLRFCNDFRKLNEVSKFDAFPMPRVDELIERLDP
ARYLTTLDLTKGYRQVPLNEQAKQKTAFSTPEDLFQYNVLPFGLHGAPATFQRLMDWVLKPHRPYASAYLDDVVIFSTDW
ESHLAKVQVVLDSIREAGLTANPKKCAIGMEEAKFVPNFASIAAPLTDLTKGNNSVMIKWSAEAEKAFIELKNSLCKQPV
LITPDFKREFVVQTDASDVRLGAVLSQVVNGEEHTVVYLSRKLTPAERRYSIVERECLVIKWALEALKYYLLGRKFRLIT
DHAPLRWMSENKERNARVTRWFLALQNFKFTVEHRFGALQGNADALSRVKTELVF
>Gypsy-30_DR_gag#LTR/Gypsy-Cigr 204-1424 ORF1(gag-like). [Danio rerio]
MSETESAAAAAAASSSANSSSSSSSASGSVNQQPLAPFVAGNLHIELPAAFKGDGTESFSSWARRFEVAVRAITPQGTDL
MNMLSSVLPTRLPSDAAFLYWDSLPTPVKTNYNTVTERLKHVFGLQQSLPFFQTHVNARPRKIGESLEVFSADITRLVLE
AFPDYDIIAQEGEKFRRFVAGLDPALQAKIHEQGATDMDQALIVACRCERARAAMQLHAGSTQSTQNQNQVAAVQSHHTE
GKLLQAVEQLTITVNELKNDVRQLQEKNAHLTHCLEFWERNKIPSVKQQPRVTRSPSPTYHNPQHQSDNAHSSKSWRKDA
AVSTDWRRTMTGDSDNSWGGDKVRPYYSSERASNFSDRRYRNDEYRRTRSPSPVRRWSRDESPQSRRVVRFQSPDSQHPY
KQQGNFH
>HIV2_pol#LTR/Lenti gi|21898538|ref|NP_663784.1| gag-pol fusion polyprotein (gag part deleted) [Human immunodeficiency virus 2]
FRVGPTGKEASQLPRDPSPSGADTNSTSGRSSSGTVGEIYAAREKAEGAEGETIQRGDGGLAAPRAERDTSQRGDRGLAA
PQFSLWKRPVVTAYIEDQPVEVLLDTGADDSIVAGIELGDNYTPKIVGGIGGFINTKEYKNVEIKVLNKRVRATIMTGDT
PINIFGRNILTALGMSLNLPVAKIEPIKVTLKPGKDGPRLKQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTF
AIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKKRISILDVGDAYFSIPLHEDFRQYTAFTLPAVNNMEPG
KRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANPDVILIQYMDDILIASDRTGLEHDKVVLQLKELLNGLGFSTPDEKF
QKDPPFQWMGCELWPTKWKLQKLQLPQKDIWTVNDIQKLVGVLNWAAQIYSGIKTKHLCRLIRGKMTLTEEVQWTELAEA
ELEENKIILSQEQEGYYYQEEKELEATIQKSQGHQWTYKIHQEEKILKVGKYAKIKNTHTNGVRLLAQVVQKIGKEALVI
WGRIPKFHLPVERETWEQWWDNYWQVTWIPEWDFVSTPPLVRLTFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRG
KDKVKVLEQTTNQQAELEVFRMALADSGPKVNIIVDSQYVMGIVAGQPTESENRIVNQIIEEMIKKEAVYVAWVPAHKGI
GGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSIIKELTHKFGIPLLVARQIVNSCAQCQQKGEAIHGQVNAEIGVWQ
MDYTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPNFTSQEVKMVAWWVGIEQSFGVP
YNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKN
FQVYYREGRDQLWKGPGELLWKGEGAVIVKVGTDIKVVPRRKAKIIRDYGGRQELDSSPHLEGAREDGEMACPCQVPEIQ
NKRPRGGALCSPPQGGMGMVDLQQGNIPTTRKKSSRNTGILEPNTRKRMALLSCSKINLVYRKVLDRCYPRLCRHPNT
>HIV2_env#LTR/Lenti gi|9628888|ref|NP_056844.1| env polyprotein [Human immunodeficiency virus 2]
MEPGRNQLFVVILLTSACLVYCSQYVTVFYGIPAWKNASIPLFCATKNRDTWGTIQCLPDNDDYQEIILNVTEAFDAWNN
TVTEQAVEDVWHLFETSIKPCVKLTPLCVAMNCSRVQGNTTTPNPRTSSSTTSRPPTSAASIINETSNCIENNTCAGLGY
EEMMQCEFNMKGLEQDKKRRYKDTWYLEDVVCDNTTAGTCYMRHCNTSIIKESCDKHYWDAMRFRYCAPPGFALLRCNDT
NYSGFEPKCTKVVAASCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMRCKRPGNKTVLPITLMS
GLVFHSQPINTRPRQAWCRFGGRWREAMQEVKQTLVQHPRYKGINDTGKINFTKPGAGSDPEVAFMWTNCRGEFLYCNMT
WFLNWVEDKNQTRRNYCHIKQIINTWHKVGKNVYLPPREGELACESTVTSIIANIDIDKNRTHTNITFSAEVAELYRLEL
GDYKLIEITPIGFAPTDQRRYSSTPVRNKRGVFVLGFLGFLATAGSAMGARSLTLSAQSRTLLAGIVQQQQQLLDVVKRQ
QEMLRLTVWGTKNLQARVTAIEKYLKHQAQLNSWGCAFRQVCHTTVPWVNDSLSPDWKNMTWQEWEKQVRYLEANISQSL
EEAQIQQEKNMYELQKLNSWDILGNWFDLTSWVKYIQYGVHIVVGIIALRIAIYVVQLLSRFRKGYRPVFSSPPGYLQQI
HIHKDRGQPANEGTEEDVGGDSGYDLWPWPINYVQFLIHLLTRLLIGLYNICRDLLSKNSPTRRLISQSLTAIRDWLRLK
AAQLQYGCEWIQEAFQAFARTTRETLAGAWGWLWEAARRIGRGILAVPRRIRQGAELALL
>BEL-195_AA#LTR/Pao 72-5906  [Aedes aegypti]
MVQCSRCLKWYHFSCVGVDQSIAELVWYCRTCLGEDVSARESLGQPGITRVQPPRAAKKGKNSTGKSQDKNVQKRIDAPI
GSSEQSEVAKQPAGQLSISKGQVSGEAGTSKTQRLTNTERLLSINPSRTRSHSGNSRSESHTNSESSKKSRSSSQKTMSK
GSKRDLALLRIEEMKERSRLEALEEENQLQILKLKQKQIERKRRELEELQQLSKLVEEESDCNEDPEKQDKVEIDYIDKV
QGWMSSSNPLHPGRQRRLSESSMEEISLMIPEADSERAARRRHLQLRSSSMLAGPTKLQIASRQVFPKNLPSFSGHPQDW
PLFVSAYEQANASCGFTNSENLIRLQQALHGKALETVRNLLLLPENVPTIMDKLRRRFGNPEVLSTMLAQRVQKLEGPDS
ENLESLIEFGSAIEEFTQHLYVSKLNDHLKNPILMQSLVQKLPPCYAMQWVEYKRRSRIVDLKTFGSFMEDLVDKALEVT
FERMDLAATKRREKPKAKVFTHLVEGDNEASGIQQNNKVQTTVVQASPRRDISCSICDEPGHFGRDCREFRCASVERRWM
IVKHLGLCALCVYNHGKWPCRSKIRCEIDGCKGLHNPLLHPPISSETAKMEAHCNSHSSMNKTVLFRIIPVTLYSERNKF
DTLALVDEGSSTSLIDGEIAEFLQLSGPREPFQMRWTNGVSRTETQSRNVEMKISGRNCKAFDLCIARTVKKLDLPAQKL
DSSRLIEEFHHFGDIQIPSYDLDSPKLLIGIDNMHLIAPLASRVGKRGEPIAVECKLGWTIYGPRPNMIADVHFLGHHRC
VCEECSKADQELNQMLRDNFKLEAVGESPIRLESKEDCVARNILERTIKRIGNRFEIGLLWKNGIPRFPESYSMACKRLT
KLEARLERNPGIRESLQKQIEEYVMKGYAHKITDQELQETPPERCWYLPLNYVVNSKKPGKVRTIWDAAARTNGVSFNDS
LLKGPDLVAPLSGVINGFRERQVAFGGDIRETFHQILVRKEDRQSQRFLFRFDMNFEPEIFVMDVVIFGASCSPCLAQYV
KNMNAREHVQEYPEAADAIIRKHYVDDYFDSVDTENEAIVRAKAVRKVHANAGFEIRNWVSNSSKVLKELGEVEPQEVKL
LDMSASDTERVLGIMWRPDIDSFVFSTEFRSELQPYIKEGAWPTKRIALRCVMSMFDPKQFLAPLLIHGRILMQNLWRSG
IGWDEKLGEEHYDQWLRWTRLLPLIDDIQIPRCYLGEMSSTVYDTVQLHVFADAGEDAYGCVAYFRFTDGKNVHCAFVEA
KAKVAPLQYLSIPRKELEAAVLGARVMKAICESHSVKIKKYFLWTDSNAVISWVKSDARRYKPFVAHRIGEILSVTNPEN
WRWVPTKDNAADDVTKWGNATQVCSDNRWFRGPDFLYSAEEDWPEQKHKSIEVEEELRASVLFHDIVLPDVILSRIEHIS
KWKVLVRMVATMYRFITNCRRKIKKQSIEALPYSKKGATTVSAEQVPLRQEEYLLAENYLWRVAQGAEFADEVKTLFKNQ
DSPKGQPRMIEKSSPLYRLSPFLDECNVVRMEGRTVAADYAAFDVRFPVILPKQHLIVEKLVEFYHQKCGHGSREMVVNE
VLQRFYIPGLRSLVERVSRHCLWCKVQKAKPVVPRMAPLPASRMAVSEHPFSYVGVDYFGPIEVVVGRRREKRWVALFTC
MTVRAIHLEEVYSLTTQSCEMAIRRFVKRRGSPIEIFSDNGTNFVGASKDLEAQIRTINVECADTFTGAKTKWTFNPPSA
PHMGGVWERMVRSVKAAMSVFANGERLTDEILQTTLAEVEHLINSRPLTYVSTNVQEDKEALTPNHFLTSCPLIECMPSR
NAMQLGDRLRNSYCQAQYLAEELWSRWQREYLPLMNRRSKWLEERKPVAVGDLVYVADSEKRRTWERGVIEEVFTGDDGR
IRSAMVRTKTGLKRRAVAKLAILEI
>BEL-93_CQ#LTR/Pao 31-3246 Large internal deletion [Culex quinquefasciatus]
MVSRMKETKCMFCKKADKHEHGWEECSKCGSWAHTKCSGVDEKSEEEWICPKCVDSEFLLKVPGNKTKKSGAISDSGTVP
GASSVAVPTEEELAEEQRAEREAFVKQIELRKKRLAEKLAWSEQRMKEEAEMQALELKTQREIEQKQLAHDQEMLQRQLS
VEKEFLKKRSALKKQIDASKAKVEALKAEKSTEQKVTDWLKGGENSGTGGKPKPKPKPAVTPESSDHEDSGEDSDSVKSS
KSGVKNILKKGGGSFGNTTRITREQLAARKVVSHALPKFKGEPEVWPLFISCFEHTTAACGFSNIENLTRLVEALHGEAL
ENVRSSLVFPSAVPGIIQDLRNMFGRPEKLLKALLEKVRQAPAPHADRLGTFINFGMVVKQLCDHLEAAGLHDHLNNPML
VQELIEKLPPSYQMDWVRFKRGKKENPLRRFANFMKKIVDDASEVADFSPQNMSDHNKPERGKPQGRAFVHVHETEPKQV
EAPRIERPSRPCWFCKRADHFIRSCEDFKRMNVAERLKEVERLQLCGRCLNNHGSRPCNFRGRCTVPNCVGDHHPLLHRA
EETVQLQKAENSSRSVIFRMMPVTLQAGKRQYDTVAFLDEGSSATLVDDAVAKQLKAEGVPEPLIVNWTGNINRIEDGSR
KVELMLSAKGSTEKFPLSTRTVGELLLPQQDVNYPEVVGKYTHLSGVPLEDLPSGVPTILIGLDNLHLFAPLESRIGQPC
EPIAVRSKIGWTVYGTEKRKPRRSVHLNVHLVVPVSSSQAPEKRKVPDGRKPSTVPVSEPKETQAREILEESTTTLGREP
EKNPALKEKNEPTNRQRNEDCTTKDEQPRAAASEHRSDHGAAPNTNGHETSKAPTKMVREIVNNCVAQLTWVRTTWSVNP
PLSSHLGDAGERLMRSVSEALMALDDGRRLMDEIPKTATDGAENARPLAYLLQQSGEAEAIFPNSFQRYASPNQPGGALP
SPHPTVALRDTYQRPKQLAGVTWKRRNDENLPRRTRFGKTISRETMEGNERKCWIRGPVDESIVGKDERVSKAWVRTESG
WGKRAVAKLAVSEMRVGNPKPEADSQTGLRAG
>BEL-213_AA#LTR/Pao 1297-6609  [Aedes aegypti]
MPPITRKGSTLRQLRTQLEEVTASFDDIAVFIQRFDEHTTASQVEVRLEKIDDLWEKFSETLVELKSHEDFEDEEKYYQK
LRMNISEQYYDGKSFLKDKAKSLHEPTDLEQSVREPSMLGVLDHVRLPQIKLQTFCGEIDDWLSFRDLFTSLIHWRTDLP
EVEKFHYLKGCLQGEPKSLIDSSKITKANYQIAWDTLCKRYNNNKLLKKKQVQSLFKLPTLTKESVAELRTLVEGFDRIV
QTLDQIVEPADYKNLLLVNLLTMRLDPYTRRAWEECAASKDQDTLEDITEFLRKRIQVLESLPPRPADPKFHQQPPSSKP
KPPAVKTSYNSVQSIPGRCVACKDSHLLYQCSAFQQLPVADRDSLLKSNGLCRNCFRFGHQARDCQSKFSCRICRKRHHT
LLCFRAEKDNATTVVSVAGGNHPSTSQDSHGSMGPNSTHVANMAATDVSACNVAQKVSSTVLLATAVVVVEDDIGVRFNA
RALLDSGSESNFVSERLTQRMKVSRNKVDVSVLGIGQGTTKVKHSVQMVLRSRVSDFSREMAFLVLPKVTTNLPTTSINS
EGWKIPDGIQLADPAFFQSKEVDIVLGIEAFFEFFETGRRIPIGNHLPTLTESVFGWVVCGGCSTSKVSQQINCNFSATT
ELERLMERFWSCEEVEFSNSYSPEEKLCEDIFQRGVQRGSDGRYTVPLPKNEDIIQNLGESRNIAYRRLLGTERRLARDD
KLREQYVAFMNEYLTLGHMRKVGSNEEETVKRCFLPHHPVVKEASTTTKVRVVFDASCRTSTGVSLNDALLVGPVVQEDL
RSIILRSRTKQILLVSDVEKMFRQILTTPEDRHLQSILYRFSPNEEVTVFELNTVTYGTKPAPFLATRTLQQLAADEELN
FPLASRAIREDVYMDDVITGTDDVDTAICLRNQLSAMMERGGFMLRKWSCNIPAVLRGLPAENLAIRDNTGVNLDPDQAV
KTLGLTWMPMTDTLRFQFDIPPPEQDVPFTKRRILSLIATLFDPLGLIGATTVSAKIFMQQLWTLQDENGNRLEWDSPVP
QMVGEAWRKFHEKLPLLNEVRVNRCVIIPNAVSVELHCFSDASERAYGGCIYVRSQDLEGTVLVRLLSSRSKVAPLQNQS
IPRLELCGALLVSQLFEKVRNSTRLSVETHFWTDSTCVIRWIAAPPNTWTTFVANRVAKIQAITNGWNWRHVAGVDNPAD
LVSRGISAEDIVHNELWWGGPHWLKQGQEAWPNGTTEDRIVGEEERRRTTIACTMSPVTEFNEFYLSKFGSFTELIRRTA
YWLRLMKYLQNPKENRFEGVFLTTAELRTSQHVIIRNVQREAFAQERKALMDGQAVSSKSPLRWFNPYIDEEGLIRVGGR
LKNSSELEGTKHPAVIPARHRLTKMIMKHFHETLLHAGPQLLLGVVRLQFWPLGGRNVARQIVHQCMRCYRAKPTTVQQF
MGELPSSRVTISRPFTKTGVDYFGPVYIRLAPRRTAVKAYVAVFVCFCTKAVHLELVTDLSTECFLLALRRFVARRGKPS
DMYSDNGTNFVGAKNKLTELLSLLKNREHHERITSELGQNAIQWHFNPPSAPHFGGLWEAAVRSSKNHLLKVIGESVVSA
EDFSTLLVQVEACLNSRPMTPMSDDPDDLEPLTPAHFLIGSSLQALPDIEVEAFPSNRLNRFQLIQQKLQLFWSRWRREY
LNLLQARTKRWKPAIVVEKGRLVVIKDDNVPPIRWKMGRIVAVHPGDDNVVRVVTLKTATGELKRPVEKICILPMPNVDE
LDESDANSSRN
>BEL-227_AA#LTR/Pao 457-5857 via tfasty with BEL-614_AA, 1 frameshift. [Aedes aegypti]
MMPTEKATAKQTKLKLLYRRRTNILGSANVIKKFNDEFDATKQDQLPIRVQHLDALWREFEETQEEIEVLEDDRKGFQQE
REDFQTLYCELKASLQSKMPPQQPAAPPTPVQPISSSVPISSCVRLPEIKLNEFSGNLDDWVSFRDLFVSLIHTSVQLTQ
VQKMHYLRAALSGEAARIISSLEISANNYLVAWNLLKERFENPCLLVKRHMSALLSIPSLKKESAQGLADLADEFNRHVQ
LLDKLEGAENHWNSFLVERLSQCLDPVTLREWETLVSEDGEYPKFQELLEFIHRRSRVIQTLKLSHSANTQSEIKHPKSR
IVSHVTSDNVPKCVSCKQAHFLFQCEQFRTLSPQQRFEVAKKHGLCLNCLKGTHQAKNCSSGSCKSCARKHHSLLHLPPF
SSVPGSQPATTSSRSAEASNSQSCQMSHSVPNVVESSPSVELAVASPPVSSSFRSKSSRGNPFPSSSVDFVANSPSTSCQ
SADVTTQPRQSTVILSTAVIKVKNADNQYVCARALLDSGSQPSFISESLCQKLRLKRTKLNSPVSGIGQSVVNARYAVTL
SLKSRFETYTAQLDCLVLPKLTVALPSHHIDVSRWRIPKNLPLADPQFNISQGVDIIIGAALFFDLLEHDQISLASGYPT
LQKTVLGYIVCGKLEQQTPDTTNMQSCNICVEDRLDTQLQRFWEIENFDTGKAYTPDEQYCEDHFQSTVARDNSGRYVVR
LPLKEEKLSMLGDSHTTALRRFQQMEKRFAVDEGLRHSYTEFMEEYERLGHMELAPVASRNPQFFLPHHAIQRPESSTTK
TRVVFDGSCRGAASLSLNEALYVGPTVQPALFSTVVNFRLPRFVITADAEKMFRQIWVHPDDRKFQQILWRGSSTEPIRT
YQLKTVTYGLASSPFHAARVLIQLANDEGHRFPLAVPVILKGTYVDDVITGHDDHDTMAETCKQLSEMMKSGGFVLRKWA
SNYKTVLIHIPEELWETSAELELDRSEAIKTLGLLWFPQRDVFKFKVPTLPDLPVVTKRIVVSEMSQLFDPLGLLGPVVV
NAKMFIQSLWAANLSWDSELAEESATWWRNYRADIKQLQQLVVPRRVLWNTQHKYSIHCFCDASQKGYGCCVYIVSPDEL
GQLHSHLLTSKSRVAPLRGQSIPRLELCAALLGSQLVDNLLANTNIDASVTFWTDSSIALHWIKSRSNSWKVFVSNRVAE
IQRLSKNSTWMHVPTDLNPADHISRGMLASQILTDKLWWHGPAFLTSPVEQWPKCAVLMPTKSEVEEEMRPLVSLPLMSE
DASIFSEFSELAKLIRFVAYCFRFRNNCKLPKNQRVLSSLSPEEVDFALKSMIRLAQRQEFPTEIGLYSRNKSDSTANIA
SKSPLKNLNIFIDEFGLLRIDGRLKKLNAPFDTRHPILLPANHKLSWLIARSVHLQTLHGGPSLLLATIRQRFWPLRGRD
LARKVVRQCVTCFRCNPTPASQIMAPLPSVRLRPARAFTYAGMDYCGPFYVRPLIGKGTSVKVYVALFVCLVVKAVHLEV
VPDLSSVACIAAVKRFVARRGRVLELHCDNATTFVGADRELRQLRKEFQLQFKSPEWGDYCSGNGITFRFIPARSPHFGG
IWEAGVKSFKYHFRRIMGQKAFSMDQLLTVVAQIESVLNSRPLVPISDSPDDLSALTPGHFLIGEPLVSIPEPDLLQKSP
NRITRFQEMQRSVQDLWRCWSRDYVSQLHQRSKWRRPSVDVRKGQLVLLKNENYPPLQWPLGRIVETIAGSDGRVRVVVV
KTASGEYKRAITEIAVLPIDSDDEEEKTSLLPSTSDAVDG
>BEL-216_AA#LTR/Pao 991-6430 via tfasty with BEL-642_AA, 2 frameshifts. [Aedes aegypti]
MPGGEDLRLLFKQERSLRVSLDNLKEFVRSHPDGPDRRGVELRLCKLDEICGKFIDVRMRIELLTDDAAEGDISTDTEET
EEAKLQRHMRLRKQQDRENARIIKDFENEVYHLKQLLLGRLQPSPPAGPSQQHRAASHAPPQSKVKLPELKLPSFSGRMS
DWVTFRDTYKNLIHDDNNLSNMDKFTYLRTSLTGDALQEIASIEISSANYDIAWKALESVFENKKLLVMTYLDALFALEP
LRQENFETLSKLVNGFEKNLQMLTKIGEDTEGWSTLLQYMVCKRLHSSTLRQWETHYSSKEVPKYKDLIKFLKGHCSVLQ
SIAPGRQVQGEPKKSVRPSLSHAGVQSSSSCPFCGESAHSAFKCTKFSKMRVSERVDAVKKHSLCLNCLSSGHIARFCTR
GSCFHCGQRHHSLLHANSSTTANSPTKSGQSTGNQSSKKPHGQNMQPPQAKPTPNGHSTHTQPTQSGRNDPQSPTNASNA
QSHTSATDCPSTSLHTAPLATQRHLPHTVLLSTAIVNLYDQFGNSLLARALLDSGSQRCYMSETISQKLKFKRTREHLPI
AGIGGSRTASTKAVFAEVHSLVTKYVTNLKFHVLPRVTVDLPTRSIDIRSWNMPKELVLADPTFHESGAVDLIIGAEVYL
ELMIAERQIKLGGSGPILQNTLLGWIVSGGVPDESTSAPAVSACATEKIEEGLARFFELESCRTTSTLSLEESACETHFE
RTTIRDSSGRFVVQLPKKQFMLDRLGDTQAIATRRFMALERRLDADPALKKMYTEFIDEYLRMQHMREISPRELSTFPVT
YFLPHHAVLKPDSTTTKLRVVFDASCASTTGVSLNDALMVGPVVQEDLTSITLRFRLRKYAMTADIEKMYRMIKMHPMDH
PLQCILWREDSTKPLRFFVLTTVTYGTSSAPYLATRCLKKLAEDEKANFPAATNTIIYDFYVDDMLKSVDSIEEAAQLSK
DLVHVLGTAGLTLRKWSSNSRELLDQIPPYLRDERSSLDLELSNPTVKTLGIKWEPRSDIFRFTVPQWNPATEFTKRIIL
SDFAKLFDPLGLVGPSLVPAKVFLQELWRSKCSWNDILPDELQKWWREFRGSLEGLTHLQVPRWIAFGSDTISVELHMFC
DASAKAYGACIYLRCTSFDGTVTSTLLTAKSRVAPLEDLKKKRKQASIPRLELSSALTGVYLFEKVVQSIKITAQPYFWT
DSTIVKCWIAAPPSRWNMFVANRVSEIQHITRGGIWNHIAGLENPADVLSRGMTPDLLKDFEMWWQGPPWLHLDKSSWPR
TANINPEDLDPSLLEERSTVSVPAHVFNPSPVFSLRSSLQDLVRIVSLIRRFAHNCRNPGDRRAGFLRHEERAEALHQLL
ILAQQESFPEDLITLRRTGEVKPTSRLKQLAPRLVNGLILVGGRLRNANISAGRKHPVILDHHHPLSVLIAAHYHQKNLH
AGQQLLVASMRERYWPLAARTLARKVIHSCVKCFRVRPKAHEQLMADLPAERVNPAPAFLRVGVDYCGPFYIQYPYRKGG
PIKCFVAVFVCLVVKAVHLEVVGDLTTQAFIAALRRFVSRRGRPEIIMCDNATNFVGARRELDELRKLFNRQEFVKAVTE
EASWENINFKFIPAKSPNFGGLWEAAVKSMKEHLKRTLGNTVLVSDEMATLVAQIEASLNSRPITPLSNDADDLEILTPG
HFLVGRPLTAIPEPSLQDLNEARLSRWQRVQYFLQRIWNRWSTQYLSNLHARTKWTRQRNNLFIGTMVLLSEDNVPPLKW
RMGRVTEIHPGNDGNIRVVKVRTKDGDFLRAISKVCVLPIRDNEPSPSSAHGED
>BEL-80_CQ#LTR/Pao 40-5331  [Culex quinquefasciatus]
MDKLERVRNAQLAQVKRELAAAEKLGERKASIGEATDRLELLKELAGKFRQTQESIEQEQENPEVIASVHDYREEFNESY
YAARNLLEKYIVDNNPDETGSTDSGHTVIDGNGELREAMRLLLNTQRTMMERSGNAGGNLEPAGNNVPNVRLPAIDVPKF
SGERKHWSSFKDIYTTTIHNRNDLRPSLKMQYLVSYVDGFAQQLVGRYSISDAHYEEAWTALTDYYDKKKFTVFALVREF
VEQPAVEEAVSGELRKLATTSDEVVRQLNALGAEFNTRDPWLIHILLEKLDDETRSLWAQRIVEVDNPSLDDFLKFLGNR
CDALETCSAFSRKVSPNVPKKETTKKPPSEKKVQSLYSAAVEEKCAKCSKEHPLYQCDEFRKMDLQCKRDLVAQEKLCYN
CLRSSHIAKSCSSKSVCRNADCKQRHHTLLCPKSTVRQVVNESATEENSTIDPVVTMVAQVPADVPRKAFILPTAIIRIR
GADGRLIQARALVDSGSEASLISEACVSKLGLPRANGKVAVTGMGQQAAGTTRGVVKLEIANRFDDTSVLQTMAYVMGKL
TSTLPTQLCQVHPSLLDRDVQDFLADPAYQRPGPIDLILGCDVFLALLRPGQVKDDGGVPVAQNTIFGWIVSGNQAIYTH
RIQANVSIVNLHAELDINRTLRMFWEQEEIPKPAQLTPSEEAAAEFFKSTLSREKDGRFIVRLPFDESKPALGESLGPAI
KRLRSMERHFRSDSEFHKLYSDFLTEYQALGHMEEVPANEVEVEAGKCCYLPHHAVVKDSTTTKLRVVFDASCATSTGVS
LNDRLLAGPNVNQELFSVFLRFRTYKVAFTADAEKMYRQVWVHPADRDYQRIVFRETEDQPIKHYRLCTVTYGTKCAPYL
AIESMKQAASEFKLKYPEAAKKIELDTYVDDFLSGAQTVQRAKELKSQVVEILESAGFHLRKWTTNCPELLQHAAETDQT
PVEVKLDERANAVKALGILWHPKEDEFSFKVNLSPNSVNTKRQLLSDSSKLFDPFGWLAPVAIKIKILYQHLWLCELSWD
DGLPATVEPAWKEIKETLHLLEQIRIRRFAPNKDGKIELHGFSDASEAAYSAVVYAREPDETGQAEMNLLAAKTKVAPIR
QVCVPRLELNGGTLLANLMLAIVAALSHLEVELYAYTDSSIVLHWLSAHPRKWKTYVANRTSAILEVLPRDRWSHVRSEN
NPADCASRGLTPAELVAHPMWPHGPKEMNSKDVSWKNVPLEPIDDEDLLETRQLKVLHSTAMVIRTDYSIESRLLARRSS
YTLIVRTLAYVNRFLLALKSEDANLEPGLSPNEIYDAKAQLARFAQHGAYEKEIQLLLKGEELPAKDKLSALHPFLDGQG
TMRVGGRLQNSSHPYDVKHPIILPGSHKVTELLLRELHLRNLHAGPTLLTATVNQQYWVIGLQAAVRQAVQGCARCVRLK
GKTASQLMGSLPVTRVMGTRAFAHVGVDYAGPVKVHASCVRGVKTTKGYIVVFVCMATKAVHLELASDLSTNTFIGALKR
FVSRRSHPNEMWSDCGTNFVGADTWLKEIRGALEKHNVAANRFLTNLGIKWVFNPPSAPHRGGLWEAAVKSAKKHLVAVL
GSDAATFEELSTVLTQVEACLNSRPLCPLSADPDSYEALTPGHFLVGQPLNLIPEPGVQHLPMNRLDKWQLVHRHTTDIW
SRWRDEYLAHLQPRTKWRTTETNVKEDQLVLVKNDNAPPTQWELARIVKLHPDASGVVRTVTLRRGQAEYLRPVQKICVL
PTD
>BEL-47_CQ#LTR/Pao 423-2909 Similar to BEL-55_CQ [Culex quinquefasciatus]
MWKAMFTMKLEDAFQQRVHAMQKIANLRDVVHDLQHPALAQLTKLRQTLWSLYDEYGRAHSCIVGNVPDDDLAQQEVEYD
AFDQLFDAVSVPLEEKFIALTNANPKTSAMDYVAHQQKLWTIYESNYWDTPMMDCESAQPELSGQTANSNLRSRPENLET
EVILRSHSPSTSYPSSPPKTRSRSQTLEADTALRSRMPPKIDPIRPSKPTSASDVLDTEVVMRDQLQPATNADPTDLPVS
AISSEVTETSVQCVPLEPAQGNPNESGTGRVLPDDGTHMTGAPTPDSVLNHEASLIATDNGIEPQVEPDERWELAMPTVT
TLLNTDRCSEDSGSRTEAEMMSTVLPIFPEPNLFNSKRSLTDGDARTNEREPLPAVILQNEKVNSLRVEHGSSLTTIQRD
AVTLQTRAELNPPLPTDAKAPDKRRLMIACPNTPLNDVHGNRKKHAVNKTATPNLQKTNGVSPKIPDPLHAVLCRGTPHE
QRPTSSTSGDLRDTEAPEPNRVTHQHHEEKPPQKRKSETEQLTKTCVRSERKGGSKHALKRLQHRAAPKKSTPTSEALNH
RPLLNEPPGLPQRRRTITAVFWTCLKLNRTNGSPCCSRCCSKLTSNLKATIVESRTKPKTKRSRSLWTTSSTTAAALVSM
LQILLAFCHTIHAKYYENDFVGCETSFPNNGRGPCEQIVAPQSVKVNRRVVSSQKVRLLRLLAGWQRSKIPSNPPYSYST
VRMSRSCNRRYNGDSTYSRGCHPRKPIIQDVSGRSLMNDSEPAHRKYSVGERTLGTKSGQPLNTMTTPSCSTETIVTGSN
KPARSTLRFDIIHANLISKNVESMLQRGE
>BEL-44_CQ#LTR/Pao 22-5270 via tfasty with BEL-80_CQ, 2 frameshifts. [Culex quinquefasciatus]
MDQERLKSLTSKREVILAKVKWELSVAKAIKTRNPSLGEVAERRDKLTGLAQCFDDVQTEIEEATPNLEEVVTVFNHRIL
FEDAYFQIKDIYTEYLDQHVEEPEVRPEDRQDDLRDAVKALLESQQQMLLAQCQKPPPQTLALAAGSHVSNPVPHNVVKL
PQIDIPKFTGERKHWRSFKDLFVCTIHSRTDLRDSVKMQYLFSYLDGEAKGKVDSFSINDGNYREAWDALVTYYDKHKYT
VFALVREFVDQQPVTNAKELKHLVATSDDVVRQLKALGREYESRDPGDFSNFQEFLEQRCDALETCSAFSKKTGPEVSKK
ESQKPTQRKVQAFHTSAAVSCAKCSKDHPTYHCDVFKAMDVAGRRELVLSKKLCFNCLKPLHTANKCPSKSTCRTPDCKQ
RHHTTLCQQRQQHSQEPEKADRDHPPRQPEETEEASSVSANAAQAKATKHEPSSVALLPTVIANLEGKDGKLHQVRCLVD
SGSQASLITEACVKRIGLKRTNASLEVTGVNGEIVGTTAGAVTLVMSSRFDGETKLTTQAYVLGRLTATLPNQRFNVADL
PFLEGLELADPSFNSPGEMDVILGADVFLSILQAGQVKNRQGIPVAQRSIFGWMVSGKISQPCRTSSHHAVLNVAQEFDI
DRTLRLFWEDQEIPEGKLLTTEEKRVIEHFDSTLTRSEKDGHFIVRLPLDDSKCKLGESLNAATKRLRAMERKFQRDPNF
KERYVAFMREYQKLGHMEEIPETEVQADCTKSYYLPHHGVVKEDSSTTKLRVVFDGSCATTTGVSLNDLLLNAPNVNADL
FDVLLRFRTYPVVFTADVEKMYRQVWVHRDDTDYQRIVWRESPDEPIRHFRLLTVTYGLKNSGFLAMSALKKAAEDFEQH
YPGAAERIKEHTYVDDLVSGADLAAEAARLVEQIDEIAGKAGFTLRKWCSNVDETLLPLADVKNAAVPIQFPDERNAIKA
LGIHWLPQEDAFTFKVNMKTDGPNTKHQLLSDSAKLFDPIGWLAPVTVRAKILFQQCWLYDMNWHDPLPAAVEQMWIEFK
ENLPRLEQVKIPRWMSSYNGHVELHGFSDASEEAYSAVVYIRTFNEIDGAYVNLVAAKTKVAPIRQVSLPRLELNGAWLL
ARLMKRVAKAFERFKVEMFAYTDSTIVLHQLAFHPRKLDTYVANRTASILEVLPRSRWFHVKSEENPADCASRGISPAEL
VNHPLWWFGPPWLKAHASTWKHEMPDEEFDEATLEVRKKFRTFNIVVRLPKTTYEEESRFLIRFSSLLGACRQLSRVNRF
LYNLRPGNKEKRSGSIAPAELHSARMQFVRLAQHDVFQKEIKTLAAGREVSPKSKIANLYPFLDGDGTLRIGGRLQQSSL
PFEVKHPVILPKDHRFTKLLVEELHSQNCHAGPSLLTATVNQRYWIQGCQSVIKQVIHNCVRCRRLKAKTAQQLMGSLPA
ARVTACRPFTHVGVDYAGPIQVRCSNTRGTRSMKGYIVVFVCLSTKAVHLEAVSDLTSQGFISALKRMIARRGYCCEIWS
DNGTNLVGADRLLQEIYEAIMAHSKEAEQFLCNLGIKWKFIPPASPHQGGIWEAAVKSAKSLLRPVVGNEKLTFEELSTV
LCQIEACLNSRPLCPLSTSPDSLEALTPGHVLVGQPLNMIPEPDVMHLKMNQLDRWQKMQRYSTEFWNRWRDEYIATLQP
RGKWRASEENIKPGQLVLVKNDNAPPSAWELARVVAVHPDRAGLVRNVTLRRGKHEYQRSVQKICPLPN
>BEL-57_CQ#LTR/Pao 541-2553 Fragment (N-terminal third) [Culex quinquefasciatus]
MAPGLRALFHQERFYLNTLTNAKQFVEAYKEAQHSGQLAGWKQRIDGLDDKFHANRLAIELSLDDDTDKATKKTDDAAAQ
ATEEADKDASEESNRLIRKKFELDYVLVYSFLVNEIQKQTIVPQANVDPVSPGRSRVKLPDVTLPMFDGSILEWITFRDS
FKSLIHSNVELSPFDKFMYLIGSMTPKARERIDNIDVSAANYPIAWQALEELFENKKLIFKAYMDALFAIEPMRKECYEC
LAQLVDGFERNLNMIKKLDISTDGWGAVLSHMVCCRLDHSTLKQWESHYRSTEVPEYNDLMAFLRGQLSVLQSLPSSKSE
SHKHEHRSLIPKTTYAVTSPATSLCPFCSQPSHSPFKCDYFQGLSVSQRLDLVRTRNLCLNCLSPEHMVRKCPSGTCRVE
GCHRMHHTMLHLSSNERSSTSTSPANSRSNSPHQSYPQPYSSSPPPPESQHPLATSLVSTNVVGARKIPATVLLQTAIVK
VLNSRSQHQSARALLDPASQLNLISEDLVQKLKLRRYPCHQPIGGVGNSTVISSHAVHIALGSYTNTNFRAVQTFHILEK
ITQDLPSRIIDTSSWKLPTNVNLADPRLAEPRSVDLLIGMELYFDLLLDGFIKLGSEKPILQNTVFGWVASGKIRSGRPE
RAPKLAHVSIISKIHNSNHQGGSLPLTCDTT
>BEL-65_CQ#LTR/Pao 217-3145 Perhaps gag. [Culex quinquefasciatus] 
MFRRSSPALPDPVPEAFLALPGPVPGVSPSLSDREPEANHVLPNPVSEASLALPGPVPGVFPSLSDRVPEANHVLPNTAS
EASLALPGPVPGVFPSLSDRVPEANHVLPNTASEASLALPGPVPGVFPSLSDRVPEANHVLPNPVSEASLALPGPVPGVF
PSLSDRVPEANHVLPNTTSGASLALPGPVPGARPALADRVPEALQNLDKLAAALYRRERVRQRIIQIQRDFRDQKHPTLK
SVTMTKNKVWSEYHEFNRCHGEVIILVPEEALNEQEEVYWVFESLFNEVAVPVEELLLDIQKTSFKKLDPQEVRYEQFSS
APKPKPAATPKPVPTSASTHVNPMVFTTTPIKSDPRSSTSPHEVILVPGRYAPPKKSIEVVGLKPEPNPESSLIQLKTPE
KHIATESICELVSDSRPILSSAQPSAVDSRPREVFNMLPIADIKSDFPETTDYLKNVTAKEESGPVLPAIPFIQVSPHHK
VIDTDPRRVHSEEPKNHPDFELQQNCAQSLSLSAMAACRIRSGDSNRHRGTKSVAANEARSQKCVEIRLPIVSADLVFAE
VPEDVANSANSERDEEATNSRQRASFCEVLPDSIPEQNPEAVPLDQTVALDPDINRFHPESGLNNPQDEADSSRVTRDSG
SKVTKIPTKMIPRSRGAPVFPERNSQKRNDTNSNPVPRVQISVKNTLHVHLDIVPKTSISLVKTVAEKDPLMPPVSKATG
KLELFSTIGKSQPRKCGVPPARCQPRQLCQECAKLQNQTKEVTNQEINYNKDTDDCALQVGRPYAPPSRREQVTYKLTWI
NLIKPGGMCRIAHSETASCNPFPALYREAIGVPKKQSFDNPDRTDDLALTAAVAVLQLLQGPRDTLQNQDKKPATQSRPN
DTLSDEKVAQEWLINRELVATKMLNTSDPYLAEETLPVNEHETERQLGEARTTVKILSRPWDPGSTSHTSSPIQNKPRNK
TEDPELLLNQRFNGGN
>BEL-63_CQ#LTR/Pao 435-5744  [Culex quinquefasciatus]
MPPKEATKVLAERLAKRKGILALRDNIEKFVSKFNGELDMCQVSVRLDSLDQLKNDFLDVQNNIEKLDEPNNLDANIAQR
VDFEQRYCDIKGFLLSKRPVDLNQTLEMSTMSHSHSHNFHLRLPKIELPQFDGDYSRWLSFRDTFVSMIHANSDIPTVAK
LQYLLQSLGPTAKKPYESVDIKADNYFTTWSAILKRYDDKRHLKRQLFRGLYDLPAVPEECASAIHNLADDFQRHVKALE
KLDELVQHWDTPLVNMLSYKLDQATLRAWEEKNSEKADVKYDDMIEFLYQRVRVLEASGSESKQSASAKVAGSSSKQSRP
RFVANAASSSSSNGSCLLGCSENHHLRRCPVFLGKDVQQRRDLVAQKRLCWNCLSAGHPARKCGSKFSCQTCKQKHHSLV
HVSSPTRVSSTPAVTSVTIDQPSNTASANAAPVGSSSTTPQVSMAVQTACNTVLLETVVVNVVDDHGKKHKARALLDSAS
MSNFMSGQLAKNLYNRPIKVDVAVAGIGVSTQRVRSAITAAIESRNTTFSTKLEFLILRQPSAELPTVPIDVSTWKLPDI
VLADQRFNVPEPIDLVIGSESFWELHTGRKISLGAGLPWVVETHFGWAVSGTASAETTCIPRICQLSAVNDRLEAAIQRF
WEVETIPEGPAHSVDENRCEEFFAKTTTRDATGRYVVRLPLTDNPEIVLGDSKTIAERRFLGLERRLDRDPATKEAYHKF
MHEYLSLGHMELVDGPVDYRKPHCYLPHHPVFKQSSTTTKVRVVFDASCKTSSGYSVNEKMLVGPVVQPDLLSTLLKFRF
QAVALVADVEKMYRQVLVHPDDRPLQRIVWRFNPTDPISTYELRTVTYGTASAPFLATRTLAQIAQDNKELHPDAAEAVA
RDFYVDDLISGAPDVETAIKLRREISTMLAAAGFPLKKWASNAPEVLRDIPTEDLALLPVYDLQDGQTVTTLGIVWDPQT
DTLCFRVQLPPPASVLSKRKVMSYIAQIWDPFGLVGPTTLKAKLFMQRLWALKHKGEACAWDTPLPLKIQLEWKEFHMLL
HMLSQVKVPRFVSTPGATIQLHFFSDASEKAYGACCYVRAAAANGVTTRLLSSKSKVASLSSHDSINKLELNGGRLSTQL
YKKVKKALNLSDAVPVFFWTDSLTVLHWLNSLPSRWKTYVANRVSQIQLCTSRHVWGHVPGVDNPADYISRGLSPLELLD
CLCWWFGPLWLKQNPDYWPKTVLTAADASAVTKEERKVPIVAMTTVEADFSNRVFSLTSSFPKLRRDIAFCQRFLSKLRE
RSVQRRDAPEQYAPLTVGKVTTPLSVTPLSTHELQHAEFSLVRLAQQEHYAEEISDLSGGERVSKSSPLKWLNPFVDENR
ILRVGGRLRNAKLTHESKHPIVLSARHPLTALLASYFHEKLLHAGPALMLATLRQKYWILGGRNLVKSVYHRCHTCFRSK
PTLVIQSIADLPASRVAPTRPFSVCGVDYCGPFYIKSPVRNRAPTKVYVAIFVCFSTKAVHIELVSDLSTPAFIAALRRL
VARRGQVVELNSDNATAFKGAANALHRVYQMLKVEQVDRNEIFTWCAENGIRWKFIPPRAPHFGGLWEAAVKSAKTHLLK
TMGTTSANYEDMLTLLAQIEMCLNSRPLTPMPDDPADAKVLTPGHFLVGSNLQAVPEMDLKEIPDNRLNNWELTQKRVQQ
IWARWYPEYLQQLQSRATKGCNPPVAVEVGRVVIIKEDNVPPASWPLGKIVKLHPGKDGIVRVVTLKTAAAKEVVRAVAR
IALLPTPSQ
>BEL-231_AA#LTR/Pao 20-5962 via tfasty with BEL-612_AA, 1 stopcodon. [Aedes aegypti]
MSANNTPGTPKENEEGGCVDCSRPKSYDNLVQCDQCDSWWHMRCAGVTASIADRAWTCRMCLPLSVNTSTSSSSARIALR
LKQIEEERAIQQRAWEAEKRALEQERKAILEKYRLLEQHLDESRDNRSHRSHRSHVSQRSKLQRVNQWVDDQKLDVAVGT
TATVHENPSLKIGNGQLSRIAGNEPPAVFPITTMTSPNPNVSQQQIERNQQPTSGAIPKADSKTRGLIVDSVRFNEGNKI
PSVLPVLPPGKLATNSYHNKQVISQPVDHYQDVLAKLGSISLTPNVESPTRIFSTEPQVEGQSSRYVSQPFPVGGNDEQY
APLANVNTNANHPQSSVPRAVLAPEVPNNVPSPSQLAARQIMPRDLPLFTGDPADWPIFISAFTNTTAACGYSNVENLAR
LQRCLRGAAYEAVRSRLLLPASVPQVLNTLQLLFGRPELLINVLLEKVRTTPAPRAEKLETLIEFGMAVQSLCDHLEAAG
QQAHLTNPHLLMELVDKLPAHVKMEWASFMQRYPLVNLKNFGDFMNSIVILASKVTMYTGGMNRGGSSENAKMKFKGSIN
AHFSESDEKLCYACNGRGHRVRDCDSFKNLTVDERWKIAQTHELCRSCLYAHGRRSCRYANQCGINGCTFRHHPLLHSDR
SNQPSRGADAESAGIHTHGMPNQALLFRIMPVTLYGPRKNVKTYAFLDDGSHLTLMDEGLIDELGVSGKTRPLCLTWTGN
VSRMEMNSQQLQLTVAGVDDRRRLKLDDIRTVKKLALPGQTLRIKDLAGKFHHLQGLPVAEYENAVPRLLIGVNNLHLTV
PLSVKEGKINEPIAVKTRLGWSVYGGRSSLPANSLNLHVCGCTSDRNLHDLVKDYFSLEDVGTKPVNGLLSADDRRAQHI
LQQSTMRVGNIYETALLWRFDDVELPDSYAMALRRLECLERRMDRNPRLKENLVRQIDEYQEKGYAHRASEEELSAANMK
xIWYLPLGAVVNPKKPEKIRLIWDAAATVDGVSLNSLLLKGPDQLTSLSAVLVRFRQYAIAVSADIKEMFHQIRIREADR
HSQRFLWRTDPSNEPDIFLMDVATFGSTCSPASAQYVKNQNAAEFSDVYPKAVAEITDNHYVDDYLASFETVEEATEVSQ
QVKEIHERGGFMLRHWQSNSSAVVHSLGESSKAINKHLFLDKSTQYERVLGMLWLTNEDQLGFSTQLKEDVQQIIENECY
PTKRQLLRCLMSFFDPLGILSFILVHGKILLQDVWRVGTQWDQEIQVEHQEFWRRWAALLKQIHTVKIQRCYFPDATVQY
YRQLQLHVFVDASESAYAAVAYFRIVDPSGVIRCALVAGKTKVAPLKPLSIPRLELQAAVLGSRLLRFVLESHNVIVVKR
YLWSDSSTVLAWLKADPRKYKQYVACRVGEILSVTEVNEWQWVPSKQNPADLATKWGDGPTADIEGIWFTGPAFLQQPEP
GWPKHRLLQQSTVEELRVCNVHCETIDVPLVIDWNRFSKWERLHRAMAYVHRFVNNLIRMRGGEPTTSGYLTQAELQQAE
TTLIKLAQKEAFQSEMAILIHNRDLSIAEQTRLDTKSTLYNLTPYIDESGILRLDGRIGAAMYASNDTKFPAILPKNHQI
TSLILDSYHRQFQHGNAETVVNEIRQRYYVSRVRTLVRKISNGCPECKIRRAAPRIPRMAALPPARLATYARPFTYVGLD
FFGPLTVKIGRGSAKRWIALFTCLTIRAVHCEVVNSLSTDACIKAIRRFVSRRGAPTEIYSDNGTNFQGTERVLMQQIQQ
GLAATITNTTTKWVFIPPSSPHMGGAWERMVRSVKQAMNIAYHSGRKLDDESLLTFVAEAESIVNSRPLTYLPLDSAESE
ALTPNHFLLGSSTGILQPVAEPTDSAAALRSTLNMINQQLDCFWRRWIREMLPTLTKRTKWFREEKPVEVGDLVLVVNDG
RRNDWIRGRVSEVISGSDGRIRQAVVRTARGLLRRSVAKLAVLNIENGGKTGTGGQLYGGE
>BELPADRE#LTR/Pao 130-6222 [Danio rerio]
MATQAVGKSLEQLKAKRTVEKRAFTRLANTIFKTCKNMTEMDLQDSLNKLTIQAEKVMEVNDDLEAGMIAEIEANLDTDQ
SAELTEQQKDDLEKTASDCELKLDEVKVLLHETLWTRYGDVELSTALQVAEAESDRVEAVDPTGNHEAYDFMLSHLQNLI
KNAKEMYNKWQRCIPSGDERDFSQRQRGLEANITRLVARKADFMQARQAEEARNIAHVPVISTYPIATIKLKPATLPKFS
GSKRDFHRWKKDWEALQKQGEPTGSKEVKKVQLLDSLEEKIVRELRLTTYNSADDIFRVLENRYGNKTAIAIEIVEDLQK
IPPIRSHQPRKIVELIQEVEKALGDLSDLGNTGAINNPLVTKSIEGKLPESLKKEWLIHVSAQQSAVTPDNRFDYLLDFL
KKQENIYEQLEQLRLEEPNRKDVRNEPKWAKTKSTKSNTDQAGCVVCGDAKHKWKLYFCKQFRASKLVDKKAAVSALGAC
KKCLEVHEQYSFCKRNYLCKSQDCEDEGVPEHHYYLCPNAKREEKRADQKKSKLCPKTEKCVKDYTRDQQDFLSRLSPEL
AQQCRNVFSNTTARVFNVTKEKPGLLAQSGLLELPVIMMLLNVTANAGQKIGTLIDLASDTNYITHSAADRLNLKGEKIT
LVIHGVGGMKVRMKTKRYLLKIRVRTSQGTFKSHQLACYGLESIAEINNTVQPNQLKKLFPDIPLAELARPKVVDLLISH
REGQLAPQRIRIVGDLVLWDGPLGKTIGGTHPELFEDVTVSAYRSKTHFARSMRLAAVKYEEVTEYSPPNKPLARLHESS
VSTSTRDFLEWWKWDSIGAACEPKCGGCRCGNCQPGGKEMSLAEERELELVKEGLTYVMEDKHSNEPHWHAKYPWIQDPT
SLPDNRRAVEATFLRTEKQLAKDPQWKAAYSAQVKDMLDRGAAVKLPESSIANWAGPVWYVSHLIAPNPHSVTTPVRLVW
NSSQRFRGVSMNDLLIKGPDVLNQIRAVLLRFRSGVYAALGDIKKMYNSVWLEDQEVHLHRFLWRDTENEELGEYAITRV
NIGDKPAGCIAQLAMRETANLPSFAHLEEERRVIQHDSYVDDILTSHNDLDQLQSIVANTELILKAGGFHLKPWVFSGQS
GREKSDDKCCKIKEKVMVLPNQLHDDDNKALGLGYSVEDDKLYVMTSINFSKRKKKIRLGQNLTQEQVRAQTPNPLTRRE
LLSQVSGVYDPVGLVTPAKQKGAILVRRAFQEAKNTRLQVNETWDVALSDDLREDAIKLFEEYIQLGQIKFTRAITPPEF
EGHPWAITFSDGSENTYGAVMYLRWDSKQGPVIRLVESKAKLTPLDQKGDAIKAEVCGAVFASRLRKYFEQHSRIQVERW
FHLVDSQTVLGAIQRESYGYKTFFANRIGEIQGITKAQEWWWIPGPQNIADVITRGASPQNLDESSEWQNGPRFLSLPVD
EWPIKSAKDLAITARESINELQKKAFAAVLTRSKTKQKEPTMESKPIESPNLVRAEQKRPPAGLAVLNLCDIKRFSDLSR
LVKTIAWVWRAAKKFLGKKRTVNKPKWEAVLSLGTISVREREDALRDIFLAEQDGVTFPNTTKERLVVFKDPDSGLLVCG
GRVQVFQDDQLSVPILPSNSWISTLLAQESHKESHGGLAETLLRMRRRAWVLKGRRIAQKVVDSCVQCRKNKAKKCQQVM
GDLPLERTQPAAPFEFTAVDLFGPYHVKDDVKKRVLLKVWGVVFCCMSSRAIHTELVNSQSTEGFLLAFQRFAAIRGYPR
KIFSDPGTNFIGARPVLQDLYQFLEGIDKSTLEETAVKHGTEWIWKIHPADSPHRNGAAEAAVRIIKRALQNCGGESTLT
YSEMHTALQIAANLANERPIDARAQTQEGCIQYVTPNSLLLGRASQSGDIKTFDFSSYPFKRLQAMQSLVNKFWERWSQL
AGPNLFIRSKWHTTHRNVAIGDIVWIADQNALRGQFKLGRVISVNPDSKGVVRDVNIRTFPSYPVLITKPSKARANSSES
KIGREKIPSTVLHRDVRRLVVLLPAEEQKSK
>BEL-649_AA#LTR/Pao 266-6136 via tfasty with BEL-605_AA, 1 stopcodon. [Aedes aegypti]
MCADVDQSRMVQCVTCRCWCHFDCAGVPQDIDQCEWSCLKSETAKANPRKQKTSKAKTRSVMQTSKPTKTTTKKKSSGKP
KTVQDSTSKDLRTDPKSAGGEKPTDLDAMLLAEIEKKETVLGRAKSMKSGSSCKSALSLKLQMQQVLAEETLMLEEMRRR
REFMKKKFELMEEFAEVRSCPVPGAKVTDPLTKVKGWLQKQVPSDSESEDATEESDTDGSGDDTDETCSNHESEVDEDHV
KxSDNIEQESEGDEVSATDSDATARENLYAHEARFVPGERSTPVHAKLPGTSTRVNHSRISNALTREQVAARQVVPCSLP
KFSGNPEEWPMFISTFDSTTSMCGYRDEENMIRLRNCLKDEAFAAVRSFLMHPSMVPKAISVLKLRFGQPHMIISTLRDK
VLAMPPVRADSIEKLVDYALAVQNLCSTIDACGRKEYMRDVTLMQELVCKLPPAIKLDWARRTKKLTKVTLTTFSDWIFS
IAEDASIVANPRKPSSYEHEARSKRQGKAFVNAHVDSSSAIASDQMAAGNRMHNASNQKVFLEESISCPLCKGSCRTAAK
CKRFLDLSYEARWAAVREFRLCRRCLRKHGGNCNSKVCGVNGCAFKHNSLLHRNLVAPSVSAVSANQSKTKEEHSVNTHQ
VNAGLELFRYLPVTLFGPQAKVECYAFLDDGSELTLLDEQIANELELVGNPLPLCLKWTGGTHRFEEKSRRVDVGISGIN
GKKFDLSGVRTVEALELPYQSLNVDVLKSKYQHLSDVPVESYNRVRPRILIGVKHANVSLVRRCREGKDGEPIAVKTHLG
WTIFGGRSNHEPKADGSYSYHICACNHPNDELLHREVKQYFSLDSLGIMAPVNSTMSRDDERAMALLNSFTRVVGNKYES
GLLWRFDDIRLPDSRPMALQRLKCLQRRLANDANLKLAYDEKLADYLAKGYIRKVTAEELVQKKDRIWYLPTFPVINPNK
PGKIRIVWDAAAMAHGVSLNSVLLTGPDMLSSLVNVLNQFREYRYGICGDIREMFLQIGIRPEDQFCQLFLWNDSINDGE
PNTFMVSVMIFGARSSPTTAQFVKNQNARRFEVEFPLAVETIEKKHYVDDMLASTETEIEAIELAKSVKHVHAQGGFDIR
NWVSNSPKVLEALDESATGEKSLNFTAEIATEKVLGMWWNTSTDCFTFKISWSRFEAALIDGNRAPTKRELLRILMSIFD
PLGLVSHFLMILKVTLQEVWRMGLKWDDQIEGRQLESWKAWISLLPKLEELQIPRCFRRVTTVGEHNQIQMHTFVDAGDN
GMAAVVYLRFEEHGYVECALVGAKTRVAPLKYLSTPRSELQAAVIGTRLADTISKSLSLPVSQRFFWCDSRNVLCWLRSD
HRRYSQYVAARVSEILDTSDVTEWNWIKSEWNVADDGTKWTGQVQLKTSDRWFQGPAFLQQPEREWPASPHSMETTCEEM
KSNILAHVHSKDAKAVVEAAHYSSWRRLTKVTAYVQRFVVNLRAKQQGLPLRRGLLSSEELRLAQLYHFRQAQSDVFSEE
MKILCQAKEAGNNLRTQVESSSRIYKMSPFLDEDSVLRMNSRASKCRFLFPDEKYPIILPDNHPVTNLLLADFHERYHHR
NYATVANEVRRRYCIPRLRQTLRRMRCSCMWCRNRDAKPAPPEMAELPKARLAAFSRPFSHVGVDYFGPIEVIVGRKVEK
RWGVILTCLTIRALHIEVANTLSTSSCMMVLNNFIARRGTPVCFYSDRGTNFVGASKELREALRLLDSHEIAKEFTTPTT
SWQFNPPASPHMGGSWERLVQSVKRNLTEVLKCKRPTDEELRSALTQIESVLNSRPLTEVPVDNESEPALTPNHFLLGSS
DGSKPMTLYDDNVQVVRRGWQVSQMIANQFWRRWLTNYLPVITRRTKWFKKVKPIAVGDVVVITDPELPRNCWPKGRVIG
TVEKGGQVRRATVQTSKGVYERPAVKLAVLDVWSESG
>CATCH1_DR#LTR/Pao 30-6119 [Danio rerio]
MESEPPSEADPAVRPRSPRERHLPGHLADYDIQLPPSLHPEVPQTGASSQRPSRRSRHASTSISAGTMSSTSSRSHRSAH
YRLPRHGLSDLQAAMLEEKLKTMDLEELQQQIEEEAIVDKECERLDTQAREAQYIQEQATKARESIAKQVDTRRRLKKVQ
NELKAAKFVCELLKQESPDVSSNASQSSLAVDLRPEVSPQHDNAVNLNASVQLMRSHSTPCHVSFVPASSVMHPPVLPVT
NSVVTVSEPQLICVTSTPNITQPNIVTNSLAALSTIPPTLMSNSDLVAPLTFESSLVNKPQYCAANSATYSQAPSVRVHN
VVPSPATVTVGSPLQVQCYPSMHSSPDGTSAPYTGPAPDTSPIRSGLYPSLAQFPGLDMLAASAYGVPKPAIPHFDTGRE
SDFALLKMALENVMNNQPHLSEHYKYQVLLSHLKLPSALQLAKAYMYDPKPYTAAMQALQDKYGQPRQLVQSELSIILNA
PAVKFGDAEAFDSFSLSIQTLVGMLKTLEGPNGYELRCGSHVDRLLSKMPPSNRDGFVEYCFSRGILQTGTDRTYTLPDL
SEWLQMKSQAKRISNKAATMYQTENARFIKKEQPRSAPFRIKAKSTSILYSTDGSSAVQGHPKSKPPVKIQPFCPYCNMK
DHFLHACPKFKMLTAEKIGEWLSTEKRCWKCGRTHPPDHCTLKKPCTKCKEIHLTILHEAASQIQNNVLLVNVPSLQVYL
DRPNRSQKVMLKIVKVLLHHKEKAMEAYAVLDDGSERSIVLSQVVDQLKLPTEPETLTLRTVHQDVVNLKGANVSFYVSP
LHKPFRKYLISHAFTADNLRLSKHSYPVPALQRKYEHLKSLPLPSIDQAQPLLLIGSDMPHLLTPVQPVCTGSSHGPIAI
CTRLGWTLQGPTGLSQTSVSTPQCLHITTTTQNTELFRNVERLWQIDTLPYTNEKSATRSKHDQYALSLLQSDTTKVEVN
GVMRYATPLLRRPNAELLKASKEAVMANLRSTERKLAKDHKKAEAYCLEMRRLQEAGYVAEISIEEAEQSRESWYIPHHM
VTHNGKDRIVFNCSYSYQGQALNDILLPGPILGPSLLGVLLRFRENPVAISGDVKGMFHQVRLLPTDKSVVRFLWRDMQR
SNQPKIYEWQVLPFGTTCSPCCAIYALQMIAQTHSDGDPVLESTVKGSFYVDNCLHSLQTVAEARALVDNLRQLLLTCGF
ELRQWASNKPEVIQHLPPDARSSNSELWLSQKSTDLLEGTLGLLWNCLSDSFSYKPSQIECFEPTLRNVYKVLASQYDPI
GYLIPFTTRAKVLVQDLWKTNLTWDDPITSESLLSRWQTWLQELQGLNHIAVPRCYSPSDWQADKLNRELHIFCDASERV
YGSVAYMRTENDQGHVHISFVLARSRVAPRKQMTIPRLELSAALTGAQVANILQEELTVDINRIILWSDSSTLLQWLKSD
SCRYKVFVGTRVAEIQSLTNINSWRYVDSANNPADVITRGQTLNSLTPPCHWINGPPFLYQPDSCWPTLPADEPEPVTEL
KKSVICLHVLTCPDTTLPDVNQFSTWAELLKATVTSLHGAATPQTQPQDDSGSYILAEKLLLQQSQRDSFPEEFKALTTN
RPLPSNSRLASLSPEYDEVSGLIRVGGRLRHAHHLELDTTHPVVLDPQHYLTKLLIKDYDTTLLHPGLERVFAEVRRRYW
ILRGREAIKKHQYLCTDCQKWRAKPKMPKMADLPPTRLRLYKPPFYSTGMDCFGPFTVKIGRRREKRWGIVFKCLTTRCI
HLDLVESLDTDAFLMALRRFISRRGKPFELLSDNGTNFVGGDKELRAAYESMIPQLREQLAEQQITFRFIPPGAPHFGGV
WEREVKSVKQALKVVLKDLTVTETVLRTVLIEVEGILNAKPLGYVSSDVSDLDPITPNILLMGRHDSSLPQVFYDSSNVL
GTRRWKHSQILADHFWSRFIHYYLPNLQERQKWRKDGGEIGLDQVVLIVDPQLPRACWPVGKVTNTFPGLDGRTRSVEVQ
VRNRTYVRPVSRLVPLPKHTDDDPVNPDT
>TATE_orf1#LTR/Tate 357-1574 [Leishmania genus] 
MRPATEKRLHIQKRFSRHILESLRQKRTXSLSSDSPTSEMSDKRLTEKELDEYLELFVAEEATKMTAELTRKLYREGGMT
DADFHFACKGMTKSLLRSVGAADPTTKNIKKEVMDAQKLFANKEIQQVLDVEERWEEIWDNIEASKNPLEGYKVKMEAAI
VAKQMTPVIAITTATLLGLTGPRAQKATADQRIAAWLAMFVDEPMTSRLLAYNTQIAQTSAGGMRQWRKVLTRVEVPLVP
ETDRLEHLNRITFEKAHSESQAGPRTVEGSGVHRKHPCDTYRAPKRDGSDILEGGAPYAPILGADGTQIGALDMAGFEAL
SGLTEENLLKMKDLLSQCLKEQKFGQRIPRNSQSQHDYQNSNDYTYGPAKHNGRGTGQRNGYRGNAGDNRRKFFRGGEAQ
DGSKN
>CER17_CE#LTR/Pao 48-3643 via tfasty with CER13_CE, 1 frameshift and 2 stopcodons. [Caenorhabditis elegans]
MSLIPRQQIGRCLARLKDLQEEAKEEIENVEELQKGPIDALFGTIIDIVDLADRINTECYRIEQxSTKWKLLFDSDPSEK
EVMRNYKNQHGDFEVELNKTKEVRLQLHKMYKKYVETHKTRTPTTVTEYPQFPGERSSDSYISINSTAHFTRKSEHPSLQ
PxTYSIHLNSATTNSNTTIPMSTQSAIPFYSSQSSNQPTIPTYLIQPSIQSTIPLQTVPSTQQSCQHTLPQQTLASAQQP
IQQTLPYVQNSNYQHYQSAIQNGQQVFQQPFNLPIQLPQMGLMKFDGDFTKYHSFIEMFSSLFDSLPIGDVSKLQYLTMA
LDGPARDMIAHLSLIGTNYAIARDVLHEQYGDTKRTRHHLIRKLQDLPAMSNNHSMSQLQELWSNASTIFYQLRNLQADS
DNVTTADIISRKLPKRYIKLLYTGTNSERNYSASELLQTVSGYIKSETLVNTISNDNKEPLDRKLTTMSVHQHPRHTHQQ
LPNKTTNGQTLSPCIFCSSTSHVHRHEECPIFNTAEARIQKAREIGLCFGCLRSGHQRSKCSRPRTCNHCKGNHHTVFCQ
SHNRNATRNPNQREFGSQQMNSNHRINGALTSGPNTRNFRDSRSQSPSRYSREPIRNSQGFTFGRQIPSKQTRYQNQSSS
ERIHCPTRRVQFGTTAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQLNEAEETPQLPSDVPMLFQERELPVSMMS
TTVNVENIKGEQIPVNVFFDSGSNKSYITENLRDQLDLPSISKKQLKIATFGSDNLQSIKSKGYLVNFLIKDKKIPIALS
SVPSIVNSITTAKINEETVQDLIHNDNAILPRTTTLPDILIGLDFMSRILGETTSKILPNGTTINYTDVGIIVTGTENQS
TKEATLDSDQYANKHNYHHYTTSSTTDPHGILHIDPTEEHEALHKLLEKFWSLESCFIFENPKTKDDELTDELFKSTTTR
DPDGRYVCKWPFKGDKSTLPDNRQLAYFRLQSTLKRLNKDIELYKKYEEIIKDQERRGFIELVQDEFQPSYQRQYLSHHP
VIKPTSTSTKVRIVYDGSARATKTSKSLNAILHTGESLLPNLTGVLLRIRQPSILVSSDLEKAFLQLGLHHEDHDFCRFL
WQPWNPGTQRYQLTPQSPKIILHEPSTWNVLSIWIQWNLGNSNNYRLPIKQDSHFFSHLPRLPSAANLQFNFDCRKFQH
>BEL-634_AA#LTR/Pao 60-6789 via tfasty with BEL-596_AA, 10 frameshifts and 5 stopcodons. [Aedes aegypti]
MDPSESHCMLCDRPNHVDNLVQCDRCDGYLHYSCAEVGDSIADPDRSFTCKRCIESDEVVTVSSHSSRRTSNSSRSAARA
ALRLQQLEKERQIRLRELEDAEKFQRMRRQVELEFEKEQFAILEQQLQEENEDGSTSTSRVSSRRIRDNTRKWVRAASQT
GGVKCPIATTSTQIGSTIPTGTSQNPAIAPEGSTEATLAVPFSSGITSRVPAPVVAMRVIGNSGEQHSNHPTEVRTTTTT
NSDQGMITRAEIVPPANLQIDQQLPEQNAADSRSSSDDDRLQHVIGHRRxASRSTNKRRFVYRPGENxHxHFTRQITADR
RGCSNxYAETGTCSTNKRRKSVRAxRKTKLSSQIRQCDRSSSGSATTLYSLEHLAPSGEPPPGPKGIGLLPPLKSTLLTN
PNPSISQQPNSQTIGRKTSVVSSLLERGQCGQSNPSLVLPASGHQQFSVSNPQESQPPLGREQCMVFSERNQSVIQPPPG
YENFVRNSETAPAGSWNTSYPTLANPGSASLFRTSGSYQQTRRLPDHALNSTEYPPALGHQQCQLPSSTILGAQPGCQAF
PAPGPDQSGPPIGTKSSDVPDQSARVQWNHASDSQPRRGTRPTAEQMAARQVIGKELPIFAGDPRDWPLFLSSFNNSTET
CGYNDAENLARLQRCLRGHALESVKSRLLIPESVPVVLETLERLYGRPEVVIHALLKQMREISSPRGDDLKTLIQFGMGV
GNMVEHMILAQQYQHISNPMLLQELVDRLPPNLKLQWACFKRNYNPVNLATFNDFMKDLVAMASDVTLFPDLGLQTVKKQ
EKGKREKAHEGEAFVHQLSSTAAGTSTPESLPAKPCIHCGQTGHRIADCMAFRRLNVDERWKVLRQKGLCRICLIPHRSW
PCRSKLECGVGDCRMRHHGLLHVRKEESGVPSSSTLEKNVSSATSHSATSSALLRYLPVTLHFNGKSVDVFAFLDDGSSS
TMVEAEVADQLGAVGPGEPLHLGWTGDITRTEKESQHIQIVISGLNMENEFPLKARTVSSLKLPSQTVDYDALCSDHPHL
RKLPLCSYTMLSPRLIIGVDNAKLISALKSRESNTGELVAVKTRLGWCLFGKSSSGSSPGEYVNIHAELPEEDAEMSNLF
RQFLAVDEASVKRSPQSKEDQRALDILHNTTRRVDGRWETGLLWRSDEPSLPNNYNMAVRRMEALERKLAKDEELQKKVQ
GMIEEYLAKGYAHRITAAELESSMPGRVWYLPLGVVRNPRKPEKVRLIWDAAARTEGVSFNDMMLKGPDMLTALPVVLLR
FRQNRIAFSGDIKEMFHQFRIRQEDRQAQRFLYREHPGAQAQIFVMDVATFGAACSPCIAQYLKNKNAEEYKEQYPEAAR
AIVDKHYVDGYLDSVETLEEAAKLIEDVKHVHAMAGMEIRNFASNSTELLQRIGEVRETQQKSMSLEASAERVLGMMWKP
LEDIFTFQLDLKEEVRNIVTNKIVPTKRQVLRTIMSVFDPLGLVAHFVVHGKLIMQRIWRAGLNWDEQIDGEILEDWRKW
SGLLTTITEVSVPRCLLPGSGDTSQEPQLHVLVDASENAYACVAYLRTSCNGLPRCTLIAAKTKVAPLKPLSIPRLELQA
ALIGSRLVDTITKALTIPISARYLWTDSSTVLAWLRSETRQYHQFVGFRVGEILSTTTVNEWRKVPSKLNVADQATKWKD
GPSFDPKDWWYAGPSFLSDPEEKWVEDSAEKFTTTVDMRASFLLHRNQGQASMVAVERFSKWVRLLRTTAYVVRAAKRFL
GLKATGQLMQEEIQTAETLLWRQAQMEAYPDEYAALEYNKEHTSEEPKQLAKSSSLFKMSPMIDDDGVLRMNSRIAAAPV
VSTDLKYPIFLPKEHRVTILLVESYHIRFLHGNNETVFNDVRQRFQVPQLRSVIAKVAKQCQHCRVRKQFPPMMAPLPEI
RLTPFIRPFTHTGVDYFGPILVKQGRSTVKRSIALFTCLSIRAVHLEVVHSLSTQSCVMAIRRFVARRGSPATFCSDNGT
NFIGANNLLKEQLRTISKDCATTFTNSATKWLFNPPLAPHMGGPWERMVRSVKVAMAAIADHPRHPNDEVLETVLLEAES
VVNSRPLTYVPLDHATQEALSPNHFLLYGTQGINQPSRDFVQSISTLRDSWRLANYLVDTFWTRWVREYLPTLTRRTKWF
QPVRPLEPGDLVIVVEEGKRNGWIRGRITEVLPGKDGQVRRAVVQTARGLMNRPATKLALLEVRSSEVEGSQAREIGVPE
LHGRG
>BEL-606_AA#LTR/Pao 48-6154  [Aedes aegypti]
MPETDLFDCQMCELANNIDDMVQCEGCTKWSHYGCVGFDDGKKEENWRCAGCIAKSSSNSTGGDSNVQATDGQQKTRGST
GGAESISDLAQLNLKLLEERKAVLLREIELQHSTQLEQRKLQLEKEAWQAKYDILNAKCESTSSTVGSGGLGNWISRMNQ
VAVSQYQQTSVSASTVTTSLNPRTRQQHTAAGGGNATSVVTTSSRPGCSLYGSESTSFLPQITSTIALSANQPSSTYAVG
QATSYMGDFQPGVGANRPGSSTPVTSVNWVNPGANPTSSAQCLPPYVSSMEQLGGHPMPSGYVSHPYQVTSSLNNFAPVG
QVAFSQYAHSSVGSGNPYLDSINTRYSYAPPPLPTSLPQTNPHVSQAPFSAQTIPDAQIDNSSPTPRQLAARHVMPKELP
SFSGNSEEWPMFFSAFNTSTEACGYSNVENLGRLQRCLKGGALEAVRSRLLLPSSVPQVMQTLQLLYGRPEQIIYALLQK
VRDVPAPKADNLCTVVTFGMAVQNFCEHLEAAGQVLHLSNPVLLQELVDKLPANLKLDWVTFKRQFLVTDLRVFSRFMTN
LVSAAAEVTLTLDQKGPKPKKEEKQKGFVNAHATPSSIVVTEKPKTEFVKAASPITCLVCGNPDHRVKECPIFKKMDSDD
RWKVVQTHYLCRVCLGKHGRKPCRSSTRCDVQGCQSRHHRLLHNETASSSPATKATTQGGEMTPCKNPTEGVNAHHTQSS
TLFRMLPVRLFSKGRSVETLAFIDEGSSVTLLERSIADALQAKQTEMRLCLTWTSNISREEEGSCQVEVEISSVGGGKRY
PLKDVRTVESLALPAQTLHYKELADRFEHLRKLPVSDFESKAPGILIGAKNTHLTATQQLREGRVGEPIAAKTRLGWAIY
GSMPNGSNIASCNLHICGCDSDNTLHELVKQYFTVENVGVSVDRSPDSDEDKRARALLEKTTRRIEGGFETGLLWRHDIV
EFPDNYAMAVRRLRCLERRFNTDPTLFESVQRQIMQYQQKGYIHEATNEELDAVDPRRLWFLPVGIVRNPKKPNKLRIVW
DAAATVNGVSLNSMLLKGPDLVQPLPNVLCGFRERKIAVVGDIMEMFHQLKIRKEDRYSQLFLWPNETGPDPKIFVIDVA
TFGSTSSPCSAQFVKNLNATEHAEAYPRAAEAIVRRHYVDDYLESFDSEEEACQVIEEVKLVHRLGGFTIRNWLSNSTAV
LRRVGEAETKTIKIVDDSGSQVERVLGMQWRSTEDVFVFSSEVDVESVIPTKRGILRCVMSQFDPLGLLSHFLIHGRVII
QDIWRSKAGWDDTINEEILERWRVWTTKFKELEQIQISRAYFPGVTSSDIEDLQLHVFVDGSETAYACVAYFRATVNGKF
ECALVGGKAKVAPLKALSIPRLELQAAVIGCRLMKTLCSSHSLPISKRMLWTDSKTVLSWIHSDHRRYRQFVACRIGEIL
SKSNPEEWRYVPSKANVADDGTKWARGPNLQADSRWFKGPEFLWKPEESWPRQTEPEGTNVEIRSCNVHQIMESSEIVNW
DRFSKFERLRRTVAYLYRFANNCRRKAKQQPLQYSHITREEVQEAENAIWRFVQQAEYQEEIIQLQKMKEGHKCRLKRTS
PIYKLSPFIDEYGVIRMDSRISGAIFIPYDAKFPIILPKGHRVTKLVVDWYHRSYLHANNETVVNEIRQRFHVSCLRVLV
RNLSRNCMQCKVLKAKPLSPREAPLPEARLSPYTRPFSFVGLDYFGPIQVKVGRSLVKRWVALFTCLTIRAVHLEVVHSL
STEACKMAIRRFVVRRGAPLEIRSDNGTNFLGASHELIQQIQEINQHLSAVFTNATTKWVFNPPSAPHMGGSWERLVRSI
KIAFSALTTTKNPDDETLLTLMIEAEGIVNSRPLTFVPLETESQAALTPNHFLLLSSRGVAQPPMTIPERPESLRTNWRM
TTNLVNQFWHRWVREYLPTIAVRTKWYEDTKDPKVGDLAIIVDPSVRNGWLRGRILSVIIGRDGRCRQVLVKTSSGVLRR
PVTKVAILDIKPAERGDVEGNAVPPEVLDLHYGSG
>BEL-241_AA#LTR/Pao 61-6400 via tfasty with BEL-630_AA, 1 frameshift. [Aedes aegypti]
MATAVAPGTCFCGQLIDPKDKMARCQKCSRHVHLACAVEDLTINGSCLVCLRCVEDVPPPPRSLSRKSSSSTARARILLD
IRRLEEEKIMQEKAAEDKARRDQDFLSKKYDLLHAQLDEEEDGSVRSRRTVSSRQKVENWLRREPMVTAVSEIRCESDPV
GESTRTGTTPKQGHQTPSKNPATSSFQANTQSCFTVGIQSSVGSMAKWRASLDGGEQQPDTSDNQTQNPLDWTFDREARR
DSQPPPSSRLAVDLQEIQQKFDSMKLWPTDQSPPVEPGQGQRQPLGASAAVSESIQIATLPAIKSGPRMSEVVLPQKEHR
QPAILTVSQTQSDFASFNTRQIKQPNSSLFNAASNTPTFIPHTNSIVTEPCLPPHSSEYTTVFDPIHMSSPRVRFSSPPS
VPYVYNNLSPIVPPIISSYSTVHTVQSNPSPMVSSIISTCTPTSAISSTVTTPASVSMSHAWISVPNAQQLAARHVVPKD
LPIFSGDPVEWPLFLSYFQNSTEMCGFSNGENLIRLQRSLKGNALEAVRSFLLHPSSVPSIIGTLRTLYGRPDLIVNSLL
EKVRNTPAPKPDKLESLISFGLACQNLCGHLRAAGQETHFSNPSLLHELVNKLPANIKLDWAIFKQKCPEVNLCTFGDYM
SQIVLAVSDVTPFQEPEGFPNDKRKKQKLYVNAHSFGTSSNTEEARGSIDKQVFLKPCLVCKKQGHNVRECETFADSSLE
DRWKYAQELHLCRRCLNAHGRYPCKTAIVCGFNGCQERHHKLLHPRKPQSELSSQSSNSTGIVNVHHKPLVTVLFRIIPV
TLFGNGKSIETFAFLDEGSSTTMVETRIAQELGIQGEVQPLSLHWTSDVERTEEGSQVVSLEICGRGTHKRHVLKGAHTV
QKLGLPTQSLQLDLLIEKFSYLRGLPIQDYQNATPSVLIGLDNTHLKIPLQIREGKSGQPAATKTRLGWAVYGGILGATS
SINQYQFHMQAEPRKADEDLHNLVKEFFSIENFGVAAAPALEGSEVKRANKILEDTTVRLPSGQFQTGLLWKYDHIHFPD
SRPMAERRLKCLERRLMRTPQLYENVKQQIAEYEVKGYAHKITQDELASSDPRRIWYLPLGVVVHPKKPGKIRVVWDAAA
TVQGQSLNSVLLPGPDLLTSLPAVLSQYRQRQVAISGDIQQMFHQLKIRPEDKQAQRFLFRDDPSKAVVTYVLDVATFGA
TCSPSAAQFIKKRNARDFEDQYPEAAHAIIHKHYVDDYLDSLDTIDEAVDLAQQVRTVHAKAGFHIRNWQSSSKEVLARI
GESAAEVPKCFKAHNSLGTERVLGISWLPNTDEFVFSGLFREDFKPLLHGDVAPTKRQLLQVVMSIFDPLGLVSLIVVHG
KILLQNVWRSKIDWDTKIDGNLFGEWYRWAILLKQLNTVHISRCYFPGYAPESYDTLELHVFTDASEEAYAAVAYFRIID
RGQVRCTLVGAKTKVAPLKPLSIPRLELQAALLGARLAKSIEENHTLNINRRVFWSDSSTVLSWLQSDQRKYRPFVAFRV
AEIIDSTKLTEWRWVPSRSNVADDATKWKGNLRLDNDHRWFQGPEFLRLDPTMWPENHVCSKETSEELRSTNVHVVCPSE
QFIPFGRFSKWERCLRAVAYVHRFIRQLQRRIRCEALENSKWLTREELQQAEATIWRLAQSDVFTKEITLLQKNNQVPQG
QQQQLDKRSKLYKLSPFLDGNGVIRLESRIPAFSDAPYDFKCPVLLPKGHYATKLMVDWYHRQYMHCNGETAVNEMRQKY
HLSEMRVAFKKLRKDCLWCKVYKASPSTPRMAPLPEVRVTPNVRAFSFVGLDYFGPLLVKQGRHEVKRWVALFTCLTVRA
IHLEVVTSLSTESCKMAIRRFIARRGAPREIYSDRGTNFIGVSGELREKSRNINQKLAATITNINTEWRFNPPSAPHMGG
AWERMVRSVKCALASLSSERKPDEETLEALLIEAEAIVNSRPLTYMPLDHAENEALTPNCFLMLSTSGVNQPQSDLVDEA
STLKSSWNLYQRLLDRFWTRWIKEYLPTITKRTKWFVDTKPIEAGDLVIVVEEHLRNGWRRGRVLRVFPGRDGRSRSADV
QTTAGVFRRPVTKLAVLEVAGIAAENTKQYGPG
>BEL-608_AA#LTR/Pao 26-6425 via tfasty with BEL-612_AA, 3 frameshifts and 3 stopcodons. [Aedes aegypti]
MSSTNSDNDDAYVCAGCDRPETADDIVQCDTCSTWWHFLCAKVDASVADKSSWICVKCLPPPPPSRPASVRTTSSNRRAL
LEISLRRLAEEKELRKKELEINMEREFVKAKYDLLEQCALDEETETRSVRSRVELSDIxTHVDxHTLVIHSLFLFSSKKL
AHPFQIHQNAYGNITQFEKFTPGFWVFFETECILFSSKVHNYFYTWAPIPLGVITTIEQIEARDRENQVHEWVGQAAASL
RESRSLTDPTTPSFPVDISTNRTPVGQYHDDEDGAIGTTETNAGRSTPKPNTDVDRADNLNDDALSEVNDCNKSKNISKR
RVVIKRSHKGDDEKMTKGTSEDYQLLKSQLKKKNVRKHRSSIARLCKIFKTSFGNVSxGCGSAVWNPGSLENQSIWPLRD
VSRGAIAKTNLRPAPTESSLQQMNRNQARVTENVVPVSDTRDFDSIGPFQHEGRGTHEQSRNNFARSAEIGLVSTPQRPP
PANHGQTSDSLFLEVRRPSPEQLAARQVMPRELPDFYGDPEEWPLFISSLRNSTTACGYSRAENLARLQRCLKGNALKSV
RYNLLDPDSVPEVIRTLQTLYGRPEVIISKLIKTVRDTPPPKSERLETLIDFGMAVRNLVSHLIAADQRSHLSNPVLLQE
LVEKLPASVKMQWAQHLAEFPEATLQTFSNFMISVVESVSKVVLYTGYQSQKHEKPKSRERGYMHSHVEAMDPGQPSQYK
SGVPKPCLICGKGGHHIKDCESFKKSSTDSRWKTVSSLKLCRCCLGQHGRRACRSSARCEIDGCQFRHHPLLHTKSNTNN
PSTTRTTESHTYHHCGQSVLFRIIPVTISGPTKSIDTFAFLDEGSSATLVEQSLAKQLNLQGPMIPLCLKWTANMSRSEE
SSQIVSFEISELARKKRFRLENARTVKQLNLPSQTIRFEELQEQYHHLVGLPIRSYEKAVPRLLIGLRNLSLAVPQRIKE
GKRGPIAVKTRVGWCVYGSLTGALRANHFNYHICECDAGEKLDSLIREYFDVEDAGLRSVKPLESNEVQRAKQILEQTTR
RNGNRFATGLLWKYDQFELPESFPMAFQRLKCLEGRMSRDPVLKENLHRQLQEYQNKVYAHQATDDELNDTDLRRTWYLP
LGAVVNPKKPNKVRLIWDASAKVDGVSLNTFLLPGPDLLVPLPSVLFRFRQYSVAACGDIKEMFHQIHVTAADRQAQRFL
WRDTEAEPPTIFLMDVLTFGSTSSPTSAQFVKNRNAKDHEAQFPRAAEGIIKGHYVDDCLDSFEDEQEAKLVVEQVRHVH
SNGGFEIRNWSSNSKAVLEHLGQESRPTMKDLTAAGFSESERVLGMLWMTETDMLCFSTTFRPEIDALIRSNTRPTKRQV
LKTVMSLFDPLGLLASFLVHGKIIMQDVWRSGVKWDECVDDQIEQRWRKWIELFERVGEIQIPRCYFESVNTGRYRTLQA
HLFVDASEAAYSAVVYFRILDAGGNPQCSLVAAKTKVAPLKYVSIPRLELMAAVLGARLLTFVGENHTIPIHQRFCWSDS
NTVLAWLRADHRRYTQFVACRVGEILTLTQENEWRWVPSRFNVADEATKWGKGPCFDAESRWINGPEFLGLSEDQWPRST
ALNPATDEELRPCHLHHEEAQSLIDFERFSNWNRLLRTLAFVFHVFTIRKARETNAKVGKEPTHEDLKAAEIQILKIVQW
SVYPDEMSIISKNQDLPVDQQRPIDKSSFLYKLSPMMDQNGVLRIDSRTGAARVDAFDLKYPVILPRKHHVTYLLIDHYH
RKYLHCNAETIVNELRQKYYIPRIRVAVRTVTKLCQWCKVYKVQPSVPRMGPLPEARLSPGVRPFSYIGIDYFGPILVKV
GRSNAKRWICLITCLTIRAVHVEVAYDLSTQSCVACIRRFVCRRGAPLEIYSDNGRNFVGADRILRDQIKRIDEATAATF
TNALTKWFFIPPSAPNMGGSWERLVRSVKAALTNIPQDRKLDDEALLTYLAEAESIVNSRPLTYLPLDAPEQEALTPNHF
LLGSSSGVKQPPANLGSSRIVRNTWDTLQANLNHFWTRWIREYLPTLTRRTKWFGNVKSVGLNDLVVIIEDNKRNGWTRG
KILEVVKGRDGIVRQAVVQTSSGVFRRPVSKLAVLDVAGSSKAEADTHPYGEG
>BEL-621_AA#LTR/Pao 23-6149 via tfasty with BEL-608_AA, 1 frameshift. [Aedes aegypti]
MERHTATPTPRPGYSCVACKRPDSADNIVACDKCSLWWHYTCAGVSDSVKEQEWTCRNCLPVPTIPQSVRSTTSSRRAIL
QMKRLAEQQELERKQLELEKKQLELQKKHSQEKFDLEETIAEEEDNRSVRNRILEIESRDKQVSTWINQHAPVIQQQVDQ
SSHPAAALTAFPRSMQSYTNNQANDEQDIHGAVGGNDPSIQYGRRKNPTPHEMEKAEQEVQTDSSSYSNSCEQCQQQSEP
TLAQIQALETQLQRFRIQVQQRNHSTPLGLPARSTFKGAIPKAKEAGQINEIQRSFEKSLPTTVSLNQSRQNVLPNRSAD
KLISFEQTRTYHAHSNPILSERVTDEQPRTLQASSTIFPPGSIPCRPSMTHHAHYDAPGNAPVSFEQLHTFQAPPNFSAA
PPNEVQRRPSPEHLAARQVMPRDLPEFTGDPEEWPIFFSSFTNSTTACGFNNVENLARLQRCLKGNALKSVRYYLLSPDS
VPDVINTLQTLYGRPEVIINKLIRTVRETSAPKSERLDTLIDFGMSVRNLTQHLIAAGQQAHLLNPALLQELVEKLPANI
KLQWAQHLSFYPEASLQNFSNFMSAIVESVSKVVVFAGGQSTVKNEKPRNKDKSFVHAHAESSTAGHAVKEKEEREKVCL
FCGKVNHRLKDCLKFQQLQVEERWKNVQVLKICRSCLNPHGRRPCRNSNRCGIDGCQFRHHHLLHKNDGEASKKSAGVSR
VEDHAHHHHEQSILFRIIPITIHGATKSVTAFAFLDEGSSATLVERSLVEELGVEGPNVPLCLKWTANMTRNEDESQIVS
LEVSGIDQKNRFHLVNVRTVESLNLPTQTICFEELQKDHPHLRGLPVHDYKNGTPKILVGLRNLQLAVPLKIRKGKSGII
ATKTRLGWCLYGSLDRERQSEDFNYHVCECDSEARLEQLVKDYFNVEDCGVVRRSIMESDADARARKIMEDTTRRIGNRF
ETGLLWKTDFVELPDSFPMALRRLQCLERRMEKNPELKENIHRQIQEYQAKGFAHLATEDELSRADPRRIWYLPLGAVFN
PKKPGKVRLIWDAAAKVDGISLNSLLLPGPDLLVSLVSVQFLFRQYPVAVSGDIKEMFHQTRVIERDRPSQCFLFRSNPS
VEPSVYIMDVLTFGATSSPTSAQFVKNQNAQEFGDKCPRAADAIIKRHYVDDYLDSFETIEEARTVSSKVKWIHAQGGFE
IRNWSSNEKAVLEHLGDQPRKETKDLSLKDDTERVLGMLWSTGEDILCFSTTFKDEIAGLIETETKPTKRQVLKCVMSLF
DPLGLLACILVHGKIMMQNIWRSGIKWDDFIDEITYEAWRKWIGLLDEVNDIRIPRCYFQNAGAELYLSLEAHVFVDASE
AAYAAMVYFRIVEQDGTGKCALVTAKTKVAPLRYVSIPRMELMAALLGARLFLFVRENHSVKINRVVYWSDSEVTLAWIR
SEHRKYRPFVACRVGEILLSTNVNDWRYVPSKQNVSDEATKWNDGARLSAESRWFNGPTFLQLPEKEWPKSKKNITATDE
ELRACYLHQEANVLRTPIEYIRFSNWNRLLRATAYIVRFVNLRNAVEKKSSETLTHEELKAAEILLWRLVQSEVYPDEIA
ILFKNKTRKVGDRLELEKSSPLWSLTPMLDDNGVLRIDSRITEAQRVAEDVKYPVILPRKHHVTSLIVNDYHRRSLHGNS
ETVVNELRQRYYIAQLRTLVRKVEQQCQWCKVYKAKPSIPRMGPLPQARLSPGIRPFTYIGVDYFGPILVKVNRSVAKRW
VCLITCLTVRAVHLELAHDLSTKSCIACLRRFIGRRGSPKEIYSDNGRNFIGANRVLRDQIHLIEQDVATTFTNTETKWI
FTPPSCPHMGGSWERMVRSVKKAMASLPQDNKLDDEGLQTVLVEAEAIVNSRPLTYLPLNSAEQEALTPNHFIMGSSSGI
KQPTIAIQESASRITASWDLIQRRTNHFWRRWVLEYLPTLTKRTKWFNEVKPIKIGDLVIVIDETRRNGWLRGRVLEVTA
GKDGRVRQAIVQTSGGLFRRPVSKLAVLDVVGCSEGDPHGEG
>BEL-609_AA#LTR/Pao 3478-6411 + 3-2995 via tfasty with BEL-15_CQ, 1 frameshift. First half of polyprotein coded after second half. Probably an odd-duck non-homologous recombination product. [Aedes aegypti]
MSSGDPVADSREQRDADQQSQCIICNQPNHADRKMVQCDGCDHWFHFRCVGVNDSIEDPERSFRCAACTVPDPPGSTVST
SASVREARIQLEVQRLADEKRLQEKMHAEREKQERDLLEMTLRLERERRDKAMKEKFALEKDYLQRKYDLLHTQLDDDGD
AVSVRSRYQPRSERVVDWITSNPAVTMSANTGTIPTGLTSQLEPITHSMQQTSASAITNANRVHPAPGFISKVPPTAPST
TTSDSTPLPCYSNASITQAAMQNPVASVQQNFPSTSIDTSNMFVISPTIVSTASLSLPPLPTLPASSVPPYRHSFVPASF
SSQPPQLQAIPSVPSSSLYRIGTSHTAVASCLPSGGIPSVWQQSTYVSMPPPTHHSTPTTVASERRPVGEQHLYNTQPVR
SQGDQHNSASVPVSRISMHPGLGENASSVGQYAQPTAVVSNTYGLHGMQSSYQNYLPNYWFPGANNAPLQILPQQENIAS
VARPALHLGGNTSQSGSQGIQINQNPVLSSQFVPGGPQRASLHGVGSNVPMLQEPNISGFPSAPLDYAPNTQQLAARHVV
SRELPIFDGNPAEWPMFWSSYTTSTQMCGYTGAENLLRLQRCLKGEARKAVNSFLLHPANVDDIMSTLRTLYGRPEAIIN
TLLNDVRSTPTPKPEKLETLVNFGLVVRNLCAHLVSAGQEMHLANPILLQELVDKLPANVKLGWAMHKQSVAVADLRTFA
EYMNVIINAASSVSSGITEVTRAERQKGKAFVNSVRLENNSKSDQRTEKSSSSGKEFVESKASTAPKVRPCAVCQVHGHK
PKDCSVFKTKSLGERWKAVQEAHLCKRCLYPHGKWPCKAPVCGSDGCQENHHKFLHPGNPQAGNNQGNSAPASTSGVVTV
HQHLHQRILFRILPVCLHANGKSVNTFAFLDGGSDSTLLESSIARKLGVTGAVSPLCMQWTNGVRRTEEDSRRVQLEISG
TSGKRFTISGVHTVSSLDxxxxxxxxxxVKGVSLNSVLLKGPDLLQSLPMVLCRFRQREVAINADIKEMFHQVLIRPEDR
QAQRFLWRNNPSLPVEVFVMDVAIFGSTCSPSSAQFAKNRNAQEFAREFPKASTAVLENHYVDDYLDSVDTVDEAVDLAT
EVKSLHERAGFELRHWLSNKTDVLEQIGEESSVTAKNFVMGKDSGAERVLGMIWLPKEDVFTFAIQFREDLKRLLDGNAF
PTKRELLSLVMSIFDPLGLVANFVVHGKILVQEVWRSSALHSLAQVQIDRCYFPGYDAETLNSLELHVFVDASLNAYAAA
AYFRVVQRDTVRCSLVSSKTKVAPLKQLSVPRLELQAAVLGTRLMKTVVSSHTLPIGRKFLWSDSNTVLAWLRADQRRFH
QFVAFRIGEILESTDITDWRKVPSKWNVSDEATKWGSGPNASESSRWLRGPEFLYRDESEWPTQEEECSTNEEVRATVAV
HRVNVSGTVQFERFSRWERLVRAVGYVWRFQSNCRKKKDQLPYPETVHLTSKELQLAEQTVLKLVQFEAFPQEYATLKSM
QEEPSHPPKQVEKTSPIYKMNPCIKDDGLIRKDGRIGAAAIVSDDAKFPVILPKEHYVTGLIINEYHRRFAHANNETIVN
ELRQRFHIPKLRVAVKKVAGNCGYCKVRRATPQPPRMGPLPEARLTPYIRAFTFTGLDYFGPVNVRIGRKNVKRWAALFT
CLTTRAVHLEVAFTLSTESCKLAVRRFIARRGAPLEIYSDQGLNFQGARKELQEAVRKMNQELASTFTNAATEWKLNPPY
APHMGGIWERLVRSVKNALAAMETYRNPDEETFLTALAEAESIVNTRPLTYLPLDSAESEALTPNHFLLHSSNGVCQPAV
RPVDAKSALLANWGHVQVMLDRFWTRWVKEYLPVITRQAKWFGETKPVRVGDLVIVVDEARRNSWERGVILKVHPGKDGR
IRSADVRTKGGVLLRPVTKLAVLDVLDQPGMAEGRTSSNTGRGMCATVQDPSLSATAIGSTDPTIN
>BEL-4_NV#LTR/Pao 50-5224 via tfasty with CATCH3_DR_167-6232, 3 stopcodons. [Nematostella vectensis]
MPETRSNVENCRAKRKVVRSNCTRNINKIKELLPDKKNKSKVRQFANNLDEVRGKARELTAELEELDPEHIEADGDWLQD
LEEAVSEIMGEVVDYFSEAASSEPANSSDVMGNSNRSGLKGVQVPLFKGNREDWPYFWGIFKSLVHDNKTLSEPVKLAHL
NNSLADNVKIVISGLTGGPGDYEKSVKLLEGRFGDPRDVIEAHLNRITDWPAVRSDDRTGFEGFADALQAAVFALDNPTF
QHELKSLPLCTQLVRKLPAEERDExVRQVERGQVQEDLKGLAEWAQTRSKTLRMRERYNEQPTAKSVPAAKGASQQRRHQ
RYQTMHVGEKHQRKCALCEKDHSESKCPTLLPATVDKRWEMVKEKRVCFGCLRERHQRRSCSRSQKCGVDGCDxGHHYLL
HSFAPKQPPREPLTVELPPGDKGVHCGKAQASTPSVNKVALKTVAVPFTSDSGQVVMGLVLLDSGSETTLVRTGFAKQLG
ISGPRQNLTVDTVGGVSTTVKSERVHLPFASSAVKGTVSAWTIKSICAPLSAIDWSEVKRRYAHLCDVPVENTGNGTVDV
LLGLDTAALMAPLEVRRGGVTEPYAEKTPLGWVIAGPVSDSEGGGKRILRAHVSEAEDDTNHNLRMFWEVDTFGVRVEES
PPYSRSEQRALDKSCRLVDSGYELALLWKPDRPPLPNNYATALSRLESVERRLQKDPELAQGYKKAISAYVEKGFARKLS
DEERVEDTEQWLLPHHPVLSPHKPLPRVVFDSAAVHDGICLNDCLEAGPSLHNDLPGVLMRFRERPVALAGDVSDMFCHV
RLRTEDRKYHRYLWRDLETDKPPDVYEMNCLVFGDKSSPCEANFAVQRTAEDNKEQWPDAAAVVKRDIFVDDLYTSCEDV
GEAVKLREDVTALMAEGGFPMRKWMSSSAEVLATVPETERAVRNEALEMGELPQGRALGVRWDPQSDTLGFAFAHVERPP
AEETKRGVLKKLAGLYDPLGWASPYVVRAKVMLQRTWSRGIDWDELLPSDLRLEWSKWEAEMVALKSFVVPRYIYRQPSK
LRKKQLVVFCDASEEACAAVAYVRATSTVGEVTCHLVIAKTRLMPLKPISIPRGELMACQLAVRLAKAACVQLSLSMREV
IYLSDSTTALWWIRGEPRNFKPFVANRVAEILTESDPIQWHHVRTEMNIADVATRGASAGDIQAHTTWIEGPEFLRLPVH
AWPIDDVQTTAPPSEKSEMRKKVLRVQQEANAPLIDPAAFSSWLKLRRVTAxILRFLYNLRNRDKPKSGALSIEELKTEE
LYWIKWAQRDRFAREIESLEKGQPVPRASRIANLDPQLVDGVLRVGGRIDRADIPWETKHPIILDHGQDVTRLIVTEYHQ
KLRHVGVEHVFNHLRERFWILRGRAEVKECTIKCPLCHRRRVQPMTQKMSDLPAVRLAGVSTPFKHVGLDYAGPFQVRVG
RNRVEKRYVCLFTCLHMRAVHLETAHSLDTDSFIMALRRFRARRGNPVRIMSDNGSNFVGAERELRDALQELSQERIADE
LSVHGVKWDFNPPDGPWFGGAWEALVKSTKRTMRVMLGNVLTVDEVFRTVLAEAESILNSRPLVYGGSVSSPTDVSVLTP
NHFLHGCASTNSAPGEFSERDMSLRRRWRHSQYLADQFWRRWRREYVPHLVQRSKWRAIQRNLRRGDLVLIVERDVPRGK
WRLGRVLAPIASPDGLVRSAEVATTKGTLIRPVGKLALLEASQEQ
>BEL-4_DBp#LTR/Pao 93-5327 via tfasty with BEL-14_DWil, 1 stopcodon. [Drosophila bipectinata]
MNAIMHRTIQQRGACKGQITRTLNSAVEFSQRCENVETLQFKLERLVATFNHFMELSDELVEFHLEEGYEDPGLDIPEYE
DKFYAAHAIFSNAIKDMGGQDHGQDQSNILLSSTVERLFEGQNNLLEKIHTSSGTADLRFEKIRIPTFSGKYEDWSQFSD
LFLSSVNSNEKLSKCQKFHYLKSYLEGEALSLIKHIAVCNDNYQDAWEKLENRYNKRSLIARSFVQNFLSLPTANNSNIA
ELRKVIDSADECIRGLHALNCDSRDVWLIHILLSKLGSEIKQAWANCSISATEDVTIDDLFAFLFAHCDTLESCQDLPAM
QPSRPAQSRRRQAAFHASGSTQSSRECIYCQGQHSIYSCNEFKALDVVSRRTFAKDTKLCFNCLSRSHQVRDCNSSNTCR
QCNAKHHTLVHPIEARSVPVAPAHSTAADTNTAAVSHHILERANNPALLPTVVANVIDTWGNETSCRLLLDTGSTITMVS
ESFIQRIGIPRTHARISVVGLGANPAGVSRGRASFTLLSRTTTASLEVSCLIMSSLTSTIPAQQVKSNATIWTKIRSLPL
ADPTFGSPGKIDVILGADQLWNLYTGHRREFGIEYPIALHTNFGWVITGSYTDGNKASTHAQVHHAYEDLDSLVRSFMDM
EQVHPSKTTIDASDPAEQHFLKTHARREDGVYIVQYPFKEPRTPIGSTLPQALNRFAALERKFRRFPALKQQYVDFMDDY
LNRGHMELIPAAAGGEDPARYNYLAHHAVFKPDSTTTRCRVVFDGSGKDSTGHSLNSRLHIGPPIQRDLIGVCLRFRQHR
YVFCADIEKMFRGILVSDEHTQYQRIVWRKDENATLDHYRLLTVTYGLASSPFIAVRVLKQLSNDYAELYPTAAVVLNRD
AYVDDIPTGCDNIKDLIALKDELILLLSEAQFKLRKWSSNCYALLKSLPKEICEYPPEDLEEDRSFRFVKVLGLCWEPKP
DYIFFKLETPAFTTALTKRILLSELAKIYDPLGLLSPTVVFLKILFQDSWLSSVDWNEVLPQQLCTRWQQFVSEMHLLET
CRVPRYISAPHQEMELHGFADASSQAYAAVIYSRVEVNNGYAVKLIMAKTRVAPIKPISIPRLELNAAHLLSKLIYLVKQ
SLTVPISRINCWSDSEIVLHWLSSPPRTWNTYVCNRTAEILEVCPRSCWQHIRSGDNPADCASRGVLPKDLVDHQIWWNG
PPWLSQSRSAWPPVKAKFVLSTEEEACLEMKAETKVNLHISDDGNSLSCMINKSSSWSRLLRIVSYCLRFVHRLRERNRL
SPFLSAWELQYARAKIFTHAQEEFFNVEYKQLTTGQPLSKKSKLIRYTPFLDEQRVMRVGGRIDNSIATYDAKHPILLPK
ESPIAGLLVRYQHAALLHAGVEYTFHSLRQRYWILGARNLVRKTVFNCRTCFLQRRHTSSQLMADLPEFRVQPARCFLHT
GLDYAGPVSIKTSTGRTPRFGKAWFAIFVCLSTKAIHIELVSDLTTSAFIAAFKRFWSRRGPISDLYSDNGTTFHGAKRD
LAEMQRMAIAQSQDEEISSFMASHEINWHFIPPSAPHFGGIWETGVRSIKLHLKRVIGSSALTFEEYSTLLIQIEGLLNS
RPLCAPSDHSLNPLTPSHFLTGQPLTSVPEPSFLDVNINRLQRWRQLQAKVQGFWKRWNLEYLSTLQPRTKWHQDAPNVA
VDTLVVLKEPNQPPSKWMLGRVTEVHPGQDQRVRVVTVKTAKGIYKRPITKIAVLPLNxTVVQGG
>BEL-5_AA_p2#LTR/Pao 5547-6134 (similarity to BEL-27_CQ_p2) [Aedes aegypti]
MVTPPPRRRQLVGSGLGQLILSASIPMARSDEVMVTRPQKPSARSGHYHPGAHSTENRQAPFLPGSVSCSGFTEIYVSPL
HHIFPEETITTRTTPRTTKDEGSQASADALVYTVETRRDSTDEATRRRSRRASGTAIPKKVIPNPKAAHVSRSSTCVGAE
GASKQPQQLSSSHPLARVWRGPSRQGSTKFCSSREP
>BEL-6_AA#LTR/Pao 387-5549  [Aedes aegypti]
MTELKRQRGVILGRLTRIEVFIRDIESKPGITAELVQARLDVVNQCWDEYDTVQTAIDAEEGVNVEEEEEKRATFEERCM
NARAALXSIIERMQGPAIAAANVHRGQALMPIHHQQFPMVQQPVAVRLPTLELPTFSGDYLGWPAFRDAFEALIDRNTQL
SDVQKLLYLKSSLKEEAACMLDAMDITDANYRVAWDLLIERFENRRVIKQKHLKALFTTKQVSQDSPKELRRLLTECQRN
INALKQLGEPTDQWSTILVYLISSKLDSTSRRDWETQTQQEESPKYEDIVKFINGRCHTLEALATDKEELRKSSRFKPQL
SHASTSSTGCKICESGQNHPLWNCKKFIAMSPEARFDEVRKWKLCYNCFSSKHVVSKCESRGCKSCSEKHNTLLHGQQHH
QQEQRPSSHVSSSSESVPQDQRIVNASMASQANHTMQXSSDILATAMVCIYDRAGSKLPCRVLLDSGSQPNFITQAFARK
LRLKECNTSITVHGVSGVEAQVGRQVTATIESRVNGKQFNVPLLVMNKITNVLPSDNIQCDSFSTRREELADPTFSRPGR
IDVLLGAKLFFKLLLPEKIEVGDFILWNTELGWVVSGSCKQYSRDHVQSNVVTSMTDADLLQQLEKFWKVEELQVGVNGE
AKLDPAEKHYLEHVRRLSDGRYEVKIPLSQPPSXLGDSKEQALRRFHALERRLHGNDQLREMYTDFMREYESSGHMSVVP
DGLEEVGLLVNYLPHHAVLKPTSTTTKLRTVFDASSKTSSGFSLNDIMMTGPNIQADQFSLLLGFRCWRYVVTADIAKMY
RQIRVDQQSSNLQRILWRETPSQPLKVYQLNTVTYGTRAAPFLAVRTLHQLAADEKDTYPNACRSXCKRFYVDDLLXGSN
SKQALLKTRDELLAVLHKGGFELRKWSSNDPELLKDLPEGLVEKGTMCEIDDGEIVKSLGLSWDTRNDQLTYRIHLKQFQ
VYSRRTILSAIASLYDPVGLIAPIIVXAKTLMQQLWLLNVSWDDPLPEHIVQKWQQFYDSLRHLQNLRIDRWTFGCLQPI
AVEIHGFSDASMVAYGACIYVKTVDVSGNAYVRLLCAKSRVAPLKKVTLPRXELCAAVLLSELLTKVLDSVELSVDSCFL
WTDSMITLQWITAPSNRWKEFVANRVERIQNSTIGCHWRYISGKDNPADIVSRGLAAEELMDSTLWWNGPAWLVNRSLWP
EQPELRNEDIPEARKVCAVVITEPIFFEKYSSLTKMKGVVGYVLRFIHNSKPSNKETRRTGTLSASELNNALKRIIRCVQ
QTSFENEYTELQRNNSVKDKSKLIALNPFIDSDGLLRVGGRLKNAELPYSSQHPVILPAHNFLAKRIALQLHRENCHIGP
SALLNEIRSQYWPIQARNLVKKVCSSCTVCARFKARTAKQIMGDLPASRVQPARPFIKTGVDFAGPITIRSSLLRKAPKL
KAYIAVFVCMSTKAIHLELVGDLTTQSFLAALRRFVGRRGMVAEFFSDNATNFVGANSELRELKRMFESNGEHFSKKLAE
AGIIWHFIPPRSPNFGGLWEAGVKSVKNLLKKTCGAMVFTYEELNTLLVQIESILNSRPLAPVSDDIEDLMPLTPAHFLI
GDRLTSNVEPNLTSLSMNRLTRWQTIQQLKQKFWKRWSNEYLHHLQQRTKWKSSSADLSTGMLVLLKEDNLPPEGWALAR
IIKVHPGADQRIRVVTVKTSTGEYTRSVSKICPLPDPDSDC
>BEL-5_HM#LTR/Pao 28-4462 via tfasty with BEL-6_NV, 3 frameshifts and 1 stopcodon.   [Hydra magnipapillata]
MDKGRKRNYVGNIRFTTQNLHTQGGREFNKCLYCQGNHSSTKCSVVTNIEARVATLRKLARCFVCLRSGHTSKNCSSNFV
CNKCGKRHHISICNKDSDHNKYKNTKNQEAKETNATHTWSNNSNTVLLQTATTRVSDCQNFLSKKVCLIFDSGSQFSYIT
EELRNALKLKTLRKEKLIINTFGNSIGQVKVLDVIQLRVKHKINKGWTYLEALCIPEICTPLKMQNISEAVNNYKHLKHL
SLADNNFNTTIKVDILVGIDFYYSFVTGEMIRGSDGPVTIYSSLGWILAGQSKLSIPVDSNKHYSSHSMKCSVFPLRNNV
DSDLKDQLEKFWELEEIGELKDSVMHQFEKDxIKFNGKRYVTKLPFRPDHMMLSDNFNVAKKRLKNLYIKLKSDKKLLKD
YSNIFAQYEKDGIIERVTGNEITKPPGSVCYLPHHPVIREEKETTKVRAVFDASCAKNSPSLNDILYPGPNLLSKIFNIL
IRFRVNVIGITSDIKQAFLNIEIVPEHRDFLRLLWFSNLSRDDQLVIYRFTRVVFGLTSSPFILNGTMQHHLNKYLSSYP
EFIKKIIPDWYVDDLVSGCDSLNDGVQFYHTAKDIMLKGGLELRKWTTNNIELQNHINKCEGVNLYIDDKVDINTQLSNK
TVLGVNWDIKNDYFVFKFQSLFxKEKLLPKTKRNILRLAASIYDPLGLISPITTRVKTIFQILCKDKLEWDEEIPDSIKL
LWESFVLQLSKIHLICFPRYVIKEIKEDIISIELHAFSDSSIQAYASVIYIRVISRTSIKTCLLTSKTKVAPLKTLSIPR
LELLGCHLSSKLMKQVQHSICDKVVISKIVAWSDSLLHWIKEKSCCWKPWVENRVVKIRQIIDCDSWHFVHGEINPADIP
TRPDDLSHCSSSRWVEGPEFLKEKSIIFPMFEFDKNNLKGEANKECSKRGKPSEVVSNLSSCTLFCGEVVLKNIIDINRY
SSLQNLVRVTSYVLRFAKKVLKNKRSIDDNILTNDILTVNEYNYGLHLWVKEVQKDIRNDKKFNKIKSTFKLFEDQYGLL
QLKGRYCNSQVLNFEQKHPIILLRNNFLCYLIIQDAHKKVFHQGVESTLNEVRKLFWITQGRKAVKSVLHKCVICKFFQG
RTLTKTIEPDLPEFRIQSTRSFKYTGLDYAGPLFIKENNDKANILKVYVLLLTCATTRAIHLELTNDLQTPSFLRALRRF
ISRRGSPELLISDNAKTFKAKPVREFMLNRGIRKQFILPASPWWGGFYERLVRSVKLCLKKMLHKEIVTYNELSSVLCEV
EYAINQRPLIYVSDDELSESLTPFHLIFGADISRRESIVSENAPICLYPQDCSNRTKYIRKLFESIWNRFYNSYLNELRQ
HNLYRKECSASNNCQLVVGDVVLIKDENKTPRGLWRMENVEKLITGRDGIVRGAELAVISKEKRCTKTIRPLQKLIPLEV
SGEAQQVDALTQNKFENTKQIENTRSRRRAAIVGQETR
>BEL-4_DAn#LTR/Pao 297-7448  [Drosophila ananassae]
MALSNINALLDKQLITGEEIQNVIRNYKKDSPERKQQPDYFQKRIEKLVKLWEIFFKDDLIIKSTTEGAKIEHSYFENNY
FNQIRDLVVTYKGEFNKQLSTVQMDTGSVASSEEESELEPMIREQRALLISLERIMNKMTNETRQGFVPIINQYWDKITT
IHIEIYKKFEDPAKLGYLDQRYLAAEDAVIAVQTMTCEESISRPANIPQMHASLPLPKVEIPKFDGDYLKWQQFHDIFKK
MIHEASLPIIQKMWYLKTSITGEAERLIRHLSLTEGNYATAWNMLQERFSNKRVLSNALIQKILDQPSITNDAKSIKAMH
DNIKETLSALCNIGIQTENWDPILLCSLTRKLDRQTHMLYEQSIVDLKKLQKLDQFLTFLEHRFLTLEATGSDKINHTKK
GTCAQIGTEYTCYFCNKPNHIMYKCNEFLKKTTAERLNWTQRNKLCVKCFKRDHSAKECQKKNCFKCDKRHNTLLHLESK
PDSKTAASASGIQTNYVLLATARVIIEGNNGRMAEFRALLDSGSQVNVISERALNILALDVKKSELQINGIGGRTQTSKA
RVNVMLKSQHNNFNSRLEAIVLPHIVADQPGQSIDINRWKLPKHIELADPNFDKTGRIDLLLGAEHYYDIMQDKHLSLGK
GLPKLQKTKLGWIVAGKLKHNSPRSTTCAALTEEDKVDEQITKFWELDSFSTDAPCLSPLEKQCERHFLQHIQTAIDKKS
IVRLPFMDNASALGESRDLATRRFLSLEKRLLRDPQTKASYVEFMKEYEALGHMKVGHASEIKKARYFIPHHCVLKPEST
TTKLRVVFDASAVTSSGKSLNDLLHKGPTVQNSIFSILLRFRTYKYVFTADIEKMYRQIWINPEDQYFQTIVWRNNPSED
LRYYRLKTVTYGTKAAPYLATKCLQHIAQKGRKEYPNAAALENDFYVDDCLTGAETIPEALQRQQQLNKLLQNSGFKLRK
WCTNNSQVLQGVPREDITSNVQLEETSYEDYTIKTLGITWTPTTDHLCGKTEIATKANISRRDVVSEIFRIFDPLGLFSP
VVMKAKIFMQHLTKEGYEYKDDLPAHLQEEWKRYREELKVLNTIKVPRHVYLGKTPVTAEIHTFVDASEKAYGAAVYIRA
TYKDKQRTIQLLCAKSHLAPINTITLPRLELKAAVLGAQLTSKVKEDLAMKNASTFYWSDSRIVLSWINCSTSIRDKFVA
TRVATIHELSLPKQWRHVASEHNAADVLSRGMTASKFAEHAMWFYGPMFLHGSSSTWPAPFIATNEELIIMNPPKVSQSS
VMTITKEEDIIYTIQHNNSFNKLLRIIAYIMRFRRKKKYTSHTIEFEEITAARKIVFRNIQKIDFKDDIKHLKRQRETLK
GSSINSLSPFLDQNGILRVGGRLEAANISFDSKHPILLPYNDPVVKMILVQIHKDNMHCGPQALLTASRQQFWILKGKTM
ARSTVRACVKCTKAKPKLMEQIMGNLPPLRVTQARPFFNSGVDYCGPFKIHYKVRGKKPSTAYIAMFCCFTTKAVHLELV
SDLTTEAFLAALRRFIARRGKCQTLHCDHATNFVGAKNKLQELQEVIFSDNAKTQILQECNNKGVQFKFIPPRAPHFGGL
WEAAVKSAKHLLLKNVTTADLTYEELETVIVEIEAILNSRPLTPLSDDPNDVTALTPGHFLIGEPLTAQADCEPSQQPKT
LGNRWQAVSKLKHAFWKQWSQDYLQQLQQRQKWRRSSTNIKEGTLVIMKEDNVPVLQWPMGRIVRVFYGKDNFARVVEVK
TTKGIFKREIQHVAPLFNEEEPTDKHPIEEDEVEEENRAVEDRHLRKRPSHASITTVMIVMLLLLPLAWAQSIQITQFGS
KPGIFFEKIGTTQLAVADWTIVAYFDLKPYWSDMATFSKGTKKLGQMCATLNDAHSCEGMYQYFQQVENELIMENMLLAK
SRKVRAPLDIVGNIASSLFGVLDSQYAQDMSKTISKVKDNEDHVLELLQNQTSLVDSTINVVKRDEIAYAKRFNLIESQM
NAIIKDNYHWYITLTSQLTLLATNLHRMQNEIIKVLTDVRHNTISPLLLSPRQLKEQCDQIRDHLKPDQMLPVNQENILM
AYKMMQAEGTIVDNHVIIKITVPLISTEVLHIYKLTPIPAANVYGFHLFKIKTPFIAINNYRDKFVDMTTEDIANCYPKS
INDFICHSKQSMFSTEMSCEMQLFHNKTDTSCHLEITNKTVIWQEMHKKNQWIFATRTPIKFSAVCTDGTSDIWLRNTGL
LTARAGCTIRNSLITVISQTGIETSTLISYARFGEIDGNNTTIKRQNTTSSKTNKFGYTKLLDLQRDLVPNRRLRLPHRL
ETIKHHHIAMYIGLTFIIIILTIHWVRKWYKGDKRPQQVQVPAVAMRKTDTTSSPPFTINIDDC
>BEL-2_ASu#LTR/Pao 7-5544 [Ascaris suum]
LTRLETDVEKINASHAAWRELLVGLTGEKQQKESERYEKECEAQNSFLEVVDKADEAVATLKCKLAELDLAEKTLPVLED
KQEGKGWRTELPRATLPQFHGDPLEWRGFWDSFEAVVDGQPIPPVIKMTHLASCLHGNAKEAIAGLPITNESYQEAKDVL
AEKFGNPVIVRRHLYRTLQMLPSCSDKLSDIKKFSEALSRACKQLRALKEPLDNPPLVLSVLQKLPLSILEEMMRDKEAQ
EWDMELVKRALDSYLRRKEEIASLMDGGRRAPHTEFQRSSASVATAFAATKNYTEKGCALCAQPHFADECFTYRGIADRE
QRITDLKLCFRCLREGHKSRNCKFTRPCFYCRGNHHSALCPQRERVNLSWRSPAMQVNNQGGMLQDERYQVRRPSINWPQ
RESVTRARPEWASRSVVELTEGVNNDSASAGLKTINQRRPSTSPNQQVTYQTNAVVVERAEVKGMASSPQVPTAKDFKGR
LEGECRNLPARDTKVYLPTTPVEVYNPKDEASRTVETYALFDSGSQRSFITTLVAKQLNLSPVTSEVISLNTFASKRTKK
LESQLVEVGLCLEKGNTEVIEVNVVPRLVRELTCRTPPKQEKKGENLGQELIVAPGILIGSDFYWQLIGSGAPERLANNL
YRISTKVGPMIGGRLVEEKEIHSDCGVNVIGGASNAEDRWAEVEKFWKLESIGVNELSKDQENDRALECFDKTIEFINGR
YHVCWPWKYEETLESNYGLTFGRLRSLLKRLQGDPELLAMYNQNLHEQENLGIIEEVPSGSRPDGPVRYVPHQPVITPSK
NTTKLRIVFDASAKASKREKSLNECLYSGPALLPDLGGMMLRFRLPKIIMIADVEKAFLQLALKKTERDVTRFLWLDQPE
RGLNNENLKTYRFTRVAFGVVASPFLLGATLRFHLDKVAREAKEQDKEKAERSRALTEQIKENTYVDNVVLSAETPKEAV
ETYHAAKTIFDKASMNLRQWASNDTYVTSQFQETDLMPEGTTNVLGLGWDRQEDTLTVRLAVKDRNEDVVLTKRRVLSHL
SANFDPLGLIAPVLLKGKLFFQTLWKEGYQWDEILKPEHRVSWTNIVTNWKEYHTFVTERRVIRSGSKGLQLHAFVDASQ
HAFAAAIYLRSEGTRNIESHLVFSKTRLSPLRDISIPRLELMACVIGVRALTYVQKQLKVAIEKKVLWSDSKCALAWISS
SRALPIFVANRVQELNKQDGIVYRHVGGKENPADLASRGVNPKALANNNIWWKGPDWLVETEEKWPLGNDQMKGEVEKKD
MISSVLATLTTLERDHEKEEDWLNKVAARVSTWRKLKGVIGYALRWRRIKNEVRHQHAMLSMEELQCAERKIMDVMQSKH
FHELREALQHNKPHQLRRQLGVIEIDGLLRCKGRYEHEDIPAHTKWPILVPSKCRVTELIVEEAHKKNFHHGLQKTLCDV
RERFWIPKGRAVVKRVLRRCPTCKKYEGGPFMLPPMPALPAYRIRRAFPFQHTGVDYFGPMLTKDKGQTTKIWGCLWTCL
VTRAVHLDTVSSLLAEQFIQTFRRFVARRGMPERILSDNATTFTSAGKILVSEHQKKELNEGLAQYGSENGLRWDFITSH
APWKGGAYERMIGLLKRSLSKTLGRKVLRIEELQTLLCEIEAILNSRPITYVYESIHEGKAIRPIDFFSPNVDLLISSSE
DKDELSDPSYRPESEINALQEKYRVSLYVLDDFWRRWRDEYLLSLREQQKMEHLNPRNAVVREPEVGEVVIIYEEIVPRG
QWKTGIITCINRSEDNQIRKVVLKTITGENLERPINHLYPLELKACEQREKKKGNDPQTHRSQPENSSNWVLRSRIVQKK
AVGRSN
>BEL-1_DVir#LTR/Pao 196-5805 via tfasty with NINJA, 4 frameshifts and 6 stopcodons. [Drosophila virilis]
MTQRSPRKSPRLNDGQEIATTASGTQTKRTSRMVSTVSQMQVPAVSAPQSPSTVDVGTSVQPAGTVAAGVSARASTLTGA
PSPSTQLSSTQVMDLIKRVAVLEHELQRSKTGQAHVSTVTDPVKLSSAGMSGTANLPPSLIGAESGEPSSSGSLSETATM
SVVPNSKVSLSETAILSGTTILSRSPSLSEALPTSLSGNLGTQLQTVERATVMDNCSTTSSRSTPYCFAGIAQPTLSYTP
AQENQQAIILEPTQATGNFAWTTPRNDVCLPRKLPDLPEFGGQPEDWPIFFCAFTETTLAYNCTNLENNQRLLKALKGEA
RDTVKSLLIHPRNVNNVIEQLRFRYGRPEQLIRSQLISIREVQPIQEHSIAKIVPYATRVSNLAAFLQSANGEQHLANPT
LMEDLVAKLPPSKRVEWARHAATIRPFPTVVHFSAWLTDYANVVCTIVDVDSKEQRRRVLHASIDQNNEGRHRGRTKQCP
ICNGQHAVRDCNEFNLASPLKRWTVVKRHRLCFSCLRVGHMARVCNRANECQVNGCRKRHHRLLHYHDAMSHNAPQPAGD
RVMNTGRMPQPADPHTRAPQPADAQSTQQRNLSCVDSDGERLLFRILPVTLHGANKRIDTYALLDEGSSVTMIDDELLRD
LDIKGERRQLNIQWFGGRATREPTTVVSMEVSGADKRKRHVLRNVYAVSNLSLPMQSLHQRDVQMWGNGARLPMKPYRGA
VPKLLIGLDHAHLGLPMQTKRFAPQGPYAAATELGWVVFGPARDQPTATSSKSCLLAVSQEDAIQKMVNDYFDIENFGVK
LTPPVAASDDARAQRILEDTTVKIGERYQTGLLWNRDNVELPRSYDMAYKRLVNIERKMKRNDQFKQAYMKIMDDYVHKG
YARRLKQHEVALANSDKLWYLPHFGVENPNKPGKIRLVFDAAAKVGDISLNSALSKGPQHYKSLPAVLFHFREGAVGVCG
DIREMFHQVLIRPQDRCAQRFLWRNGDDRREPDVYEMRVMTFGAACSPSAAHYVKTLNALQFQDSDPRAVKAILECHYVD
DYVDSFDSEGEAITISTRIREIHANAGFELCQFTSSSPTVADALGQHGTARSIGWGEAEEKILGMCWQPATDDFKFNMKY
HKVPRCVLNLERIPTKREFLSLIMSTFDPLGFLSCLMITGKLLMREIWRRNVQWDEPLPDEIARAFSKWLQDMNNVEGFR
SSRHYFGPTPVRAIQLHVFVDASQSAFAAVTYLRVTYDNNDVRVCFVCAKTKCAPMKTMSIPRLELQAAVLGTRLMDTVK
KEHSIAISDAILWTDSKTVLRWIGSTHRRYKQFVGNRVGEILESTKVSQWRWVPTAENAADDATRPHCHVDLSQRSRWLD
GPTFLRQPESSWPQSEPGTEHSSYEDEEEMPSEFALVAANSFFISFQRFSSYSRLVRTTAWVLRFTRWSRGQRTELERFG
LTATECENAENLLIRRAQCEAFPDEVRASYNEESVGHRSDIRGLAPYLDDNGVLRAYGRIDAALCIPHSARRPIILSHRH
ALTELIVYHYHVKMKHQNVDATIGDIRTRFWITKLRRLLRNSNIWMxCVQTTxSAASATYNGSFARGQTGGQWMAIxVYG
SGLFWTTPCDDRTSKGKEMGRLVYVSDDKGHTFGVAHDLSTDSCIIVIRNFLCRRGPVLRLRSDNGKNFVGANREAKRLI
DVFEPEKIQGELSSRGIEWIFNCPANPAEGGAWERMVQCVKRVLRHTVKEVAPKQHVLESFLIEAENVVNSRPLTHLPVS
VDQEAPLTPNDLLKGVANLPDTPAIHEQPNERCVRGSSGAWRGCYETVFGSGGSxSTCLHLCDAxNGVRALSRYAMVIWC
LYATRPCHAESGEGAxWRSSTLDQMECLDA
>BEL-2_DBp#LTR/Pao 71-5373 via tfasty with BEL-14_DWil, 1 frameshift. [Drosophila bipectinata]
MEQLKALVKGRARLKANITRSLAWAEDAHQSDATPAEVSSRLEHLNTTWKEFIRFGDEIAVLDEVDGYVDPEPDNAFYEG
KYLRAHSLLSAMAGTRPSPSTVSSENGSNGLQINNDAIISLLQQQQQLFEQLAADRATAQLPRPTRGDVSAANSGTAQIV
EASAQSELPKIQIKRFAGNYSEWPAFKDIYESTIHNKANLTNTHKFHHLKSLLIDEAANLVRHLTITDAAYNTAWERLNE
RYNRPRHIVNSFMEQFMKLPTTTRSDAATLRKVSDGANEIVRGLDAIEETGRDCWIIYLALEKLDADTRRRWIERSVESD
SPTLEEFFKFLDARCEELELSKRETTGGKTTASIGDKTKKVTHSLVALDGNKCSKCYSTEHRLYGCPQFLGMSAGQRISF
AKEKSLCYNCLKPGHGVRRCKSTFNCRQCKAQHHTLLHLQGTQHAIGTIAQTGEDQDDPNAHISPVTISHIAQTEGSAAI
VCAQGTASSTQSNGWNRSTLPTAMVNVQNANGDLVACRLLLDTGSELSYVSERCIHALGLARTPSRILVTGISSIKADTT
RGCSTLRIQSRISEDQLVVQAHVLGKITSSLERQSIDASALQVFNDLQLADSQFSTSGPVDILLGSEHVWSAITGRKIFD
NKGKLIAISSIFGWVITSLFAPRASNTMALTTTVDIDATLRRFWELESIHRKAEVQPEDKEVEEHFLNTHTRDDNGKYIV
ELPFTSSDPEFADTLQGALQRFKSVERRLAQNHQLRKDYVNFMREYQSLGHMREISPSEIPNERSFYLPHHPVLGRKLRV
VFDGSYRDAKGKALNDTLSIGPSIQRDLFAVCLRFRMHKYVFSADIVKMFRQIWVSEKHRNFQRIVWREDPSDPIKHFQL
CTVTYGTSCAPFLAVRVLEQLAADHQKEFPTAAKILMEDFYVDDVLTGSNSEDELRRNRDELVQLMSCAKLELGKWVSNT
KYIDTEDNTDSSHSSVKVLGLHWHPKKDTLSYNVNLAKSPSCTKRQVLSDVSRIFDPLGLLAPTVVQFKILFQKLWLLNL
NWDDELPNKLADKWLKWRADLENLPQFQIPRLVESDTDKIELHGFSDASTKAYSAVVYSRMVKDDGTISVAILAAKTRVA
PLKQQSLPRLELCGALLLSQLLQSIKAGLKHKDLTIYAWSDSTIVLSWLAYSPAQLKTFVGNRTAEILETIPKHAWRHVD
SKSNPADCASRGLGVSELIDFQLWWKGPSWLRDKDQFLVKLNNSHNCSSLSDKRIQSEIKANCLAAQVIVTTDNPLDKLL
NRNSSWLKLIHTLGYVLRFIHRMKHPSSKRTSTSLTFDEIKSARIRWLQHAQAGFQQDFQLLLANKPLGNQSKLVNLSPF
IDKDNLLRVGGRIQHSQLSAEAKHPILLPKAHRITFLIIEHEHRVNLHPGVSSLFVIVRQRYWIFGARNLIRKITHNCLA
CFRQRQHTMHQRMADLPSVRITQALPFVNTGCDYAGPILLKDAKVRKPRISKGYICLFVCMVTSAIHLELATDLSTETFL
AALRRFFSIRGKCTRMYSDNGTNFGARDPRSSTQRKDHVANSLADEGIQWTFIPPRAPHWGGKWESAVRCVKLHLRRVIG
SSTLTHEQMRTLLAQISAVVNSRPLCYTSDTDSNYLSPAHFLIGRPFTTIPEADLGHIPVGRLGYWQSIQSMYQGFWKQW
HQEYLTSLQQRPKWTKETPNIKIGSVVLVKESNTPPASWHLARVIETYPGKDNVVRAVRLKMASGELTRPITKIAELPHS
ETVFQGGP
>BEL-3_CQ#LTR/Pao 693-5983 via tfasty with BEL1_AG, 1 frameshift. [Culex quinquefasciatus]
MASKLFKFSGNTNGHCQLCNDADEKDKMIGCDDCQHWFHKSCANVPKDPPKKQEWFCPRCVTIAEKLRGSVNPIIEMMEA
QKEAFRYMSNKSTNNQVATLKEMMDAFKASLDVKNEQLENQSAMVVDNPSGEAAILQLNKIVTRQALMDLPDFDGSYKVW
PRFQSIFETTTKEGGFSDVENLNRLEKHLKGQALFHVESLLTDHTNVPLIMKSLKEQFGNVRFLYEGYLKDALSLKNPSV
ENPQSMIDFVTSIENLVTNIKLLKQPDYLKDQRLIQDLVAKLPFNLRQQWLKSLLEKEKAVNLLEANKLPDLESFSIWLK
DHKSLATMMMSYKTGEYSQPGNRERFNRREKLNAHLDIKSDKRYKCFSCNETTHRNAECPVFAKMDVAKRIESVKQNRLC
FACCNFSNHNSRNCQNPRKCNIAGCKINHHPMLHETKRTPTVEKKSENTANQVNHHDRNDSSVYYQIMPVVLSNGDKRVR
VLALLDLGSSTSLLLDDVRKELAITGTKIPLALSWTDGNVQRDENSQEITVDIEGSHGNTYELRKVRTIGSMSLPKQSLN
KDEMIKRYPYLKDINLKGYGKESPKLLLGLPHSFVIQGLESRAGNFNQPIANRTRLGWVLHGKVSGKFPNKNFTVAFHNE
IEEDEVSINKLMNDFFSLEGFGVKQSIKPLVSKQIERAEKIMKETLQYENGQYEIGLLWKHDDVQFPDSYSAALTRLKGQ
ELKMRRDPTLRTWYNNKIKEYEEKGYIRKLSQIETITKSSRTYYIPHFSVINPNKQPPKPRLVFDAAAKTRGESLNSNLL
SGPDTNANLLGVLMRFREGRYAISGDIQEMFHQVKIRKEDQDAQRFLFRESDSSEIDTYVMQVMTFGATCSPACAQFVKN
QNALKLHENYPREVDAILNNHYVDDYLDSFDLLEEAKEVVNNVIMIHGKAHYNIRNFVSNSNSLLNSIEESKRMEINAIK
LGDDEQLYEKVLGIFWNTETDTINFKVKELQEMENPTKRNILSTIMRVYDPLGLISNITIQGKIFMQELWKLGLEWDESI
PEDLNESWNHWLTRLLAAKNIKFPRCYSTMTNIKRRELHVFADASDKAYAAVVYLRTVSQNSDDPKSEQIEINLVAAKAR
VAPNKMLSIPRLELLAAVLGTRIAENIMNELRLKIDRTIYWSDSKTVLAWIQSDARSYNVFVGLRISEILDSTTVSQWRW
VNENNPADEATKVVTKESIWMHGPNFLKYQEENWPVKGKRFQTNEELKPVHIIRECKIPNYSYIQIEWCSDWSRLKRAIG
GIMKMIVSKAKNMAYENTLLKEDFCEAEIVLIKKAQWDKFPSEMKSLTFELPIEKNSSLRGLTPFLDEKGVMRSRGRLEN
ADVLNYAAKFPIILPKDHHVSKLILKYYHEKFYHLKLDASIASVRQKYWIIDIRATMKKVKNACQLCKNRSAQPQPPIMA
ALPSYRTIPFVKPFTYAGVDYFGPVNVSIGRRVEKRWGVVFTCLITRAVYLDLSRNLSTDAFFICLKNVQSRRGRIMQLY
SDNGTNFIGANNEIKRIRQRLASEGIEWFFNPPSAPHFGGVWERMVKEVKSILASVQETMPEDVLRGLLTEIEYIINSRP
LTHIPLESEDDEVLTPYHFLINCSGDMEPMLNDVSKGEALREQWKRSSQLANNYWNRWIKEYLPSLTKRPKWNQEMKPIE
VGDIAITPDEENKGKWIKCLVTDTRPGKDGIVRSVRIKTASGKYLTRPVVKLAVLDVKRKQRNASDDDGNKKIEMKDDKQ
NENL
>BEL-2_DWil#LTR/Pao 244-4141 via tfasty with BEL-646_AA, 2 frameshifts (large internal deletions). [Drosophila willistoni]
MNKDQDICSACNKSRLNSSTQHWVQCDNCQKWYHFQCAGVNSSIAEAEWICNSCQQALDNVASTSTGRDPSTGAPNIPSA
NKATEQHCPESNAANTSYLGKLNLVEQTQSPSSNYLMLAMLEERREAEKRYIEQKYNLLAQQQGTQVTCFQLNGPTASQL
AARQVLPADLPIFNGNPEDWPIFISMYEYSCRIAGFSNAENMLRLQKSLKGKAYELVRDKLLLPILVPDVINTLKTFFGR
PEQILDRLIDKIRKIYVHKDKLESIVDFAMAVRNACATMEACNLTSHLNNPMLLRELIDKLPTQQKLNWAMHPRNESIPV
IKSFSDWLYKIAEAAATVMPGQSTKANNVNTHSQAHQQPQEGPNNRENGWQQNCKPKLQCVMCASTDHQVALCQSFKRLS
VDDRQRIINEAKVCYRCLKSHRRKCFSNRDCGIDNCNSKHHPLLHKGTGRTEVVTAHHKDNVVEGQFFRVVPIKLYGANV
TFNTFAFLDEGSSVTLIDESILDKLKISSTPEPICLQWTGEETRNEEDSVKTHLQISEAGTDKKLWLYNVHSVKKLGLPK
QTINVEELSKQYPYLRGLPLKSYQNGTPLILIGSNNWNLAIPRKIREGRRNEPIASKCTLGWCIQGSTNSSKHVTMHHCE
CNWSEIDKAIKESFTMEPIASRELQSKNDKRAKGILEDTCKKVNGRYEVGLLWKDDTVILPESYTAALKRLQCLRAKIKR
TPELFDKIQSQIDNLLEKGYASELRPEEISDRKERVWYLPIFIALNPNKPNKIRLVWDAAAKSHGKSLNDFMLTGPDYLN
PLTSVLMAFRVGRIAVCADIAEMFHQINIQESDMHVQRFLWLNKNDHTPRIFVMRAMTFGINCAPCIAHYVRDKNAVEYF
SDWKRLYRAVANIMLYAQKLRAKCSGKPLPQTLSPENIQAAKSLLCRQAQLATYSNEINSLKDKSVVDKSSSLIALNVYL
DSEDIIRVKGRSDSITSDGDAIVIPRHSRIAFLIAKDYHEKSHHIFHECTINLIRSVYYIPRLRVLYKNVRNACQHCKIS
TAKPQVPQMAPIPIARLAREIFSDNGTNFKATEKLVKEELVKIDFDQIAVHYEAIKWRFNPPAAPHMGGAWERLVRTVKS
VLKAICPSSNFNDETLRSALMEAEFIINSRPLSFVSLDTGDDEALTPNHLLLGSKAGYKPVSGNVADLRLRWHQTQSFAD
RFWKRWVKEYTPTLTRRSKWFTKRPPVDIGDVVIVVDDNLPRNLWPKGRITDVVTAKDGQVRRATICTPNGIMIRPVSKI
AVLDVGLKESEHPEVVHGGG
>BEL-8_DAn#LTR/Pao 478-8018 via tfasty with BEL-1_DPer, 3 frameshifts and 5 stopcodons. [Drosophila ananassae]
KIIRRSTSSSPVPPSHPLARSANTRSKSESLTPTLPNPQSISRTPIGTRSVTRKTVSATTMALATFISVCDKLSHFEAKI
NEPSTSESTQYALEVRRDHVKKLxETIESEYDKCSQVLQQEPPAVVSGRQxKYDYCYSVYEHCVAQLTEVIERMSVPTLT
RASSTAQLSMSSGCRLPPCDTEVFRGDYLRWPTFRDLFTAIYVNNPRLTPVEKLFHLNAKTEGEAKAIVAKSPLTHDGFE
SAWTALCDRYENKRLLVNSQLKILFNLPVVVVESGAALKELQSTIQGCLTALEHSKISIDNWDCLLVFLCSSKLPKLTLS
LWEQSLSNKCEIPAWHEMNSFLSERYRTLEAIEDGYPARGPSSSIKMVNSQPPSKNTGSKRINSFETNVMQGPKNCDLCA
KENHPVRVCPRFLQMPVSERSAYIRRKKLCLNCFAGGHQLKECTSKHNCFTCKGRHNTLLHGADLPQLTTIQSNNNPTTS
TIQSTTPTNVQSYLAAAIQGVLLSTAMINVCHLGVTYTARALLDSGSEATFISERLFRILKLPYQSVQARVSLQARVERN
QAVAAQSTKMCHFQIGSPIKPRLHIEAEAFVVPLLSGKLPSNSIPKEQLKDLPSFTWADPSFFESSQIDLLIGADILPSI
LLSGSRTKICGTLLGQETVFGWILSGPVSKAVPKSISNFSTKVSISSEAKLEKLLTKFWEVEDLPGKPVKESDSFCEKNF
VQTTRRDDTGRYVVTLPFRSCDRIDLGHSRSIALAQFLKNESRLRKNPTLKEEYEAVIRDYLDQRHMSPIVPDSSGKNFY
LPHHAVFKPDSTTTKVRVVFNASCPTSNGKSLNDILHPGPVLQSDLTLQVLRWRFFRFVFNADITKMYRQILVAPEHTPF
QRILFCDANDQICDYELKTVTFGVNCAPFLAIRVLQQLAKDVRTTFPLASEIISTSMYVDDVLAGAHTKQSAGVAIEQLR
AALRSAGFPLRKWTSNSKCILKDIPKDHLLREGFLELDDQSTAKTLGIRWQANKDEFFFAPSDITPKAVLSKREVLSQIA
RLFDPAGWLAPFVIRAKIFMQEIWLQQLGWDDPLPAELMGKWNEFLMSYPTINQIRIPRWVKFGPKSKVQYHGFCDASQQ
AYGAAIYVRIEHAQCGYVLGFSKCPSVNDPHIxGERNCAxTVSLGDTNLKSVPVSTIVSRVKGATIRSCTELTFLSxLQF
NPIIILLLQLYSPLRLPSVQSYLAAAIQGVLLSTAMINVCHLGVTYTARALLDSGSEATFISERLFRILKLPYQSVQARV
SLQARVERNQAVAAQSTKMCHFQIGSPIKPRLHIEAEAFVVPLLSGKLPSNSIPKEQLKDLPSFTWADPSFFESSQIDLL
IGADILPSILLSGSRTKICGTLLGQETVFGWILSGPVSKAVPKSISNFSTKVSISSEAKLEKLLTKFWEVEDLPGKPVKE
SDSFCEKNFVQTTRRDDTGRYVVTLPFRSCDRIDLGHSRSIALAQFLKNESRLRKNPTLKEEYEAVIRDYLDQRHMSPIV
PDSSGKNFYLPHHAVFKPDSTTTKVRVVFNASCPTSNGKSLNDILHPGPVLQSDLTLQVLRWRFFRFVFNADITKMYRQI
LVAPEHTPFQRILFCDANDQICDYELKTVTFGVNCAPFLAIRVLQQLAKDVRTTFPLASEIISTSMYVDDVLAGAHTKQS
AGVAIEQLRAALRSAGFPLRKWTSNSKCILKDIPKDHLLREGFLELDDQSTAKTLGIRWQANKDEFFFVPSDITPKAVLS
KREVLSQIARLFDPAGWLAPFVIRAKIFMQEIWLQQLGWDDPLPAELMGKWNEFLMSYPTINQIRIPRWVKFGPQSKVQY
HGFCDASQQAYGAAIYVRIEHAQEVSISLLTAKTRVAPVKTMSIPRLELCGAVLLAELFQSVVPQLPPDDFDTFYWTDST
IVLAWLSKPPCTWTCFVANRIAKITQSVDAGKWSHVRSEFNPADLASRGAAPQDLVSSNLWWNGPQWLQLPKEQWPTPIE
SVPETELEQRPIKCNLAKLPPSEDYIDRFSDLSRALRVTVYVLRFLRRCKVPSTVLPTEISTAEIREAQKCLHVLTQRQG
YPKEYSCLLKKQQIPSSSPLKNLNPFLDHRGVLRASGRLVASDTLSYDERHPIIIPYFSPWARLLVRFTHRISLHGESQL
LMRLIRSKYWIPKLKTLLKATISACKVCLIYRKRLQTQLMGELPAERATFSRPFTHTGVDFAGPFEIKNYTGRACLITKG
YVCVFVCFSTKAIHLEATSDLTSEKFLAAFARLAGRRGCPQKLYSDNGKTFVGASAIITRDFLQATREMVIAHYSHQNLS
WYFNPPSAPHMGGLWEAGVKSFKAHFYKSASSVKYTFEELSTLLIKIDACLNSRPISPMSEDPTDLLALTPGHFLIGGPL
LALAEPEIKANAVSIINRWQRLKGLHQQFCVRWKEEYLKELHKRNKWQSPTTNLQVDDMVVIKEDNLPTNEWRLGRIQKV
CPGADDKVRVVNVLTSRGVIRRPIAKLILLPLLK
>BEL-16_DWil#LTR/Pao 117-5110 via tfasty with BEL, 1 frameshift. [Drosophila willistoni]
MQTVMQKRGYCKSQITRAYHNANTFIEKTHAVASYDTRLQQLQENYLRFLQLTEELHTYKDTADWEDPDVDIDPYEEKHY
ATYSMLSVAREELHVQYARSLNNRFPVTEAREGHVSQTHVNLHYERIKLPTFSGNYEDWQHFSDMFVGSIGSDPHLTSCQ
KFHYLKSYLSGEAFSLIKHIAVTNDNYSEAWDRLVQRYNKRHVIIRSFIDSFLNLPTASVLNSGAIRKLADGADEVIRGL
RALECENRDPWLIHVLLAKVDNNTRQAWAEHSESEDYTVTIDSFIKFLLTRGDTLESSQLSRANHSRRIATTHHVNTETQ
PLIEPCTLCQHAHPLSRCEQFRALDAVARHAHVRSANLCFNCLSPNHRIATCPSKNTCRVCQRKHNTLIHAAQQTTGREF
RDSAVRVHQPESPGSNDESPAIISHHVQTTRGHQIAVTKHSKRVSLHTLENIPYAGSQTLLPTILTSVKDARGKTFTCRA
LLDTGSTVSLATESFVQRIGMRRTHAKVPVRGLAANRAGVTRGLVKFRICSCNSDHNIEVETYILSTLTSALPAQNVDMS
STQWKEILKLPLADPSFGTVGAVDVIFGSDQLWKFCTGEQRSFGNNVPIALNTIFGWTLAGPYSTFGENQSLANTHHVHL
DLDSQVRSFMEMDSIPSKTSTLEIFDPTEQHFINTHTRSQTGTYVVEYPFKDPIPPIGETLPQAVSRLQSLERKFSRDPS
LKREYIAFMDEYLKSGHMELLNTQQIDEQADGCFYLPHHAVLKPESTTTKCRVVFDGSGKDSSGVSLNERLHIGPPIQRD
LFGVCLRFRQHRYVCCSDIEKMFRKIEVAPHHTNYQRIIWRSSTIDPMQHYRLRTVTYGLAPSPFLAVRVLKQLAIDYEA
KYPLAARVLARDAYVDDIPTGCNSVGELMKLKEQLISLLDEGNFKLRKWSSNSWSFLKSIPKEDCLHGHASIEDNVKILG
IPWNPGRDEFLVNTPMIATKQAPSKRALLSDLSKVFDPLGFVAPTTVLLKLIFQECWFSAISWDDPIPETLRRQWQAIIK
ELPLLSHCRISRYIAASSPHIELCGFADASTQAYGAVIYSRVRTTNGYRSRLVAAKTRVAPLKPISIPRLELNAALLLSR
LLKLVTESLTIPISSSHCWTDSEIVLHWLSSPPRRWNTYVCHRVAEIAEDYPRRCWNHVRSEENPADCASRGLSPSQLLN
HELWWNGPSWITKPQSEWPLSEPHGQSFTDLATEERRQPITVLHGMLEDSIHELLINKLSSWSRLLRVTSYCYRFIERLR
CKGAHSDKTFLTSVELQSARCLLLQHAQRKSFSKDYEKLNKQEPLSIKSRLIRYSPFLDERGIVRVGGRIERSSLHYNVK
HPILLPKESPISLLLIRHIHQTHFHTGVDATFTILRQQYWILGARNLVRRVVFQCKLCFLQRRATHTQLMGNLPLPRVQA
TPCFQHTGLDYAGPIAIKENKGRTPRIGKAWFAIFVCLATKAMHLEVVSDLTTNAFIAAFKRFISRRTRPTDLYSDNGTT
FHGSRRALDEMRRLAIDHMKDKELASFAASEGLTWHFIPPSAPHFGGIWESGVRSVKLHLRRVIGANALTFEELSTVLAQ
IEAVLNSRPLCANGDSSLDPLTPAHFLVGSPYTALPEPCYLDMTFNRVERWNQLQAMVQGFWKRR
>BEL-15_CQ#LTR/Pao 31-6494 via tfasty with BEL14_AG, 1 frameshift and 8 stopcodons. [Culex quinquefasciatus]
MSKPPITRQTRSQTRAAQELARHNLQTEEVVDEGADLQFEASVVDLQGGEEVDCGSCIRPNNAETFMVQCSRCFLYYHFS
CAGVTVATVNLQPFICKTCIPLGPPEKIPSARSGTTSSLRSSQLSLELRRVEEEIQLEEEISQQLERKKKLIAKRYDLMS
QRDDVKSRSSGRSNRTTPNRVLNWIETQGKAGKSDPADSVNLLSGNPVGRLNAGLTSTPVNKSKSVDDLAQLAKLPAGGI
SGPDPNKPPGQLDLDSIPEVPNKPQNNPFSKGAVGKLFKPTTLYENWLDQINRKPPANKPDDVGRQLADKALAEKLARLE
DQRKQDQNLQRERERKLKHQLQRAEQERLELIREKDRVLAENQNHQKRFDEFQEDLINQFNEMLNQQQNNINSRPESSDN
WYDRELQQLQRSRELNFKRNEPTPTHSVHSSLPSISEGIGSLPSPYGGRTESSHPTIPPQEDPEVSSCSTIPPRPVPSGS
HTRPSKSCLDPPPLTSHQIAARQVVSKELPDFFGDPAEWPLFISRYNHSTKACGYTDSENLLRLDRAIKGYAREMVSSLL
LDPSTVPELLSSLKLLYGRPEQIVHNLIAKVRATPAPKADKLESLVTFGLVVRNLCGHLRAIGMEKHLSNPTLLSELVEK
LPANVKFNWALYQHQLKEVDLNSFGSYMSQIATATSGVTVLSTAPRAGRDERQKSKEKGFVNAHAEQEETSDGEGRDQPK
ERLNVVNKIETHKACPACGVEGHSAKDCIQFKDLSLDDRWKVVKAKKLCRRCLTPHSRWPCNAEACGVNGCQKRHHRLLH
YDHPPVEPQRTEPTNATVTIHRQPNPTTLFRILPVTLYGARGQVDTFAFLDDGSSVTLVERSIANKLGIAGEDSSLCIHW
TGGIKKNISNTQLVDLEISGVNNTNRLKAKAVYTVEGLGLPDQSMNFEAMAAKYDYLRSLPVQNLMSAVPGVLIGLNNLH
LMAPLKLREGREGEPIATKTRLGWAVYGAIPGREAPFLHRQMHTRIVMNYITTLxQIVTQLFIKWSLLFIKLxPNYICTI
YQTIYSIPKIVLVDFTIxEISCxAENYMRFSYICKYFYKLGFYVKxSLPKKLTIPYIVSEKLLYRHYFADTLKKTAKMNP
TIVVxTTSDIIKFDFxVLSIVGECLPPLYVNVIYVAAELLPPYPIDLYLLVVPDLLSPLLSVLFKFRERQVAIGGDIEAM
FHQVRIREADRSAQLFYWRDSPEKPLETMVTDVAIFGASCSPAHSQYVKNLNATQHEIDYPRAANAIRTKHYVDDYLDSV
DTSEEAAEIALEVAEVHSRAGFHIRNWVSNNAAVLQRIGAANPTTVKRFVMDKDCGFERLLGMVWLPEEDMFTFRLSFRE
DHDLLLSGEEIPTKQQLLSVVMSIYDPTGFLAAFIIHGKIIIQDVWRSGVDWKNKIPDELVQRWKQWIALLPKIEDLKIP
RCYFPGYHPDSLRSLELHVFVDASELAYSAVAHFRLVDRGSVRCAFVASKTKVAPLDPLSIPRLEANAGVLGVRLRKSIV
TGHSLPITRTRFWTDSKTVLQWIRSKDLRRYRPYVAFRMNEILSMSAVAEWGYCPSRLNVADLATKWGKQGPPLDINSPF
YQSQEFVYDNPSEWPEPCEDMVELAPEELRPSFVFAHFVLKPTVKWERFSKWERLLRTMAYVQRFIARKLNREKKPWQVD
LTREELQKAEQSLWRLAQSEEYPDEVATLNxNQRVPADQRESLERSSNIVKLCPMLDDAGVLRVSGRIQAAECVGYETKH
PVILPRDHPVTTLLLEYYHRRFQHSNNETVVNEIRQNFSIPKLRVLVRLVSNNCKWCEVYKSTPVVPQMAPLPRARLSPF
LRPFTFTGVDYFGPYLIKTGRSITKRWVALFTCLTIRAVHLEIVANLSTESFKKAVRRFIARRGAPQEIYSDRGTNFQGA
SSELTKEISLSINKELASTFTDAHTQWRFNPPAAPHMGGSWERMVRSVKAALGAIPLERKLDEESMVTMLTEAEHMVNSR
PLTFIPLEGADQESLTPNHFLLMSSSGVQQPVKDPMCEGAALRNSWNQIQHTLDEFWRRWVREYLPTLSRRSKWFEETRP
LREGDLVVVVDEGTRNRWQRGRVLRTYPGKDGRVRRVDVQTAKGILPSRAVARLALLDVGNVGDAEGTLPATRGG
>BEL-18_DWil#LTR/Pao 597-5758 via tfasty with BEL-3_DYa, 1 frameshift. [Drosophila willistoni]
MSPPNETQLLPLRQQRNQLQSNIQSLRARIDLENDPIILDCQSQIIESYFKQALQVLTNIEKLDPADANRAEIENLFIET
KAIILRRIGASKKEKPEELSFFNSSTYHGGHHNRLPSLKLPKFDGKYGEFKKFITSFTNMVHEDNSLSNVDKFNYLISCL
SGQALSVVSPFQVSDENYPKALERLNERYDKKVLIFVEHISSLFNIASMKKADAVTLRTILDTVSALRGSLLSLGSEADV
LNAVLIHIVMSKIDLESKQAYDRVQEYDKLPDWADCYQILSRHCQYLEGYLRNRQEERPVRDKIHSTSKVSCCAQSRCIQ
CQSTEHRLAFCPVFNSLPFIERFKIVKTASLCLNCLNKGHPASKCPSLNRCRHCGGLHHTNMHKDSNVQGNYQLDGPTIH
HQSQQIIHNTHDESKTFATSMLTRHARRGLLPTAIVLIQDKLGEFQLARALLDSCSELTFITEELAKRLQLPFRYDHYEI
AGIGELRTHMKHSVSTKIRSRISPDEWNMEFIVTKSISLPQPEKRLDVSNWAIPKEIELADPFFYKPGKVDLLLSVKEFF
DLLKTGKISLGIGLPHLVETALGWIVGGKIAEPQSTQQYTCNLTQQQDLNILLERFWKMDEIHGIQNKDISLTSEEQACE
THFQVHTQFLDSGRIQVRLPFKESPEQLGDSLSCAKRRFLQLERRLASQHQLKEMYIDFLDEYLKLNHMEVASLDNLQSG
NHYIIPHHCVLRPQSSSTKLRVVFDASSKSSSNISLNDILMVGPTIQQDLILTLLSFRLYRHAITADITKMYRQFLVAPE
DRSFQQILWRKSPQEPIQLFQLNTVTYGMSCAPFLAIRSLKFLSETYKELFPIGAAVLAEDMYVDDLLYGADSIEELNAK
TNEVTKLLSKAGLELTKWNFSGAPTDYEYNLNIDNSDVTKALGMSWLPTEDLILFRFDLPLTAIPTKRKIVSIMARLYDL
LGLLAPVVVRYKILIQDLWIERLDWDDPLPEILRTRWQQLEADLSNLDMVRVNRFVNTSPKNKCEIHGFSDASNRAYGCC
IYARVLDNGKYVTSLIISRSRVAPTQSQSIPRLELCASVLLCQTWTKIKHKLNCLVSKTYFWTDSTVVLHWIKMHPSTLK
CFIANRVSTIQTQSQDIIWSHVPGKDNPADIVSRGCAARDLMQTIWFHGPRFLTLDALHWPKSERKTDFEPKELELRNTL
VLKCSTSYKEKSIVEQIISRLSSFRMIVRVLAYVLRVFNRVPINRNNTINATRSISVEEFKLAFNHIISSIQSDVFAKEL
KDLQAGRSLKPELQKLNPFISNEQIGSQNIRLIRVGGRLAMADIPLDAKMPLLLPKTHNFTYKYIEDLHLRNLHAGAKVL
IAILRLTVWIVNARELVRKVVRSCTHCYHYKPVLMRQIMGNLPADRLLAERPFLICGVDLCGPFLTSYRIRSKVPYKTYL
AIFVCFSSKAIHTELISDLSANNFILCLKRFMRRRGVPIRIRSDNGTNLVGACSQLEGFKRQFCSELNAKNLEEFSRNAG
FEFNFIPPRAPHFGGLWEAAVKSMKTLLIKNLTSSHLTYEELQSIAIEVEAILNSRPISIHSDDPNDGEALTPAHLLIGC
SLQAIPEPVVNDSKLSYLSRWQRVTYLKQRFWELWKRDYVHQLQERSKWLHPENNIAKDQLVLIHEDNLPPQCWITGRVV
EAILGADGRVRVADVRTKKGIIRRPICKLAPLPLRDDVDVN
>BEL-40_CQ#LTR/Pao 277-2160 (N-terminal third) [Culex quinquefasciatus]
MPPKIPRTPLKKTEEDIRQEELDGLVHIREQKVDRITRMKEAITSVPRGGRTAATIRGNQKKLELVNSEFDSVHQRIILL
ADAKSRGQHDAKQREFEAMYDELIMTLEQWTDDLKPAVAAGTSNALAPAGPQPVVINQPLPKIIPTFDGKYESWDRFKIM
FKDVVDRSNELPRIKLYHLEKALIGSAQGAIDEKTIQDGNYAHAWEILEEQYGDKRRMIDLHIGGLLRVQKLVKESHEEL
RSLVQNFHGHVENLKFLGQEFTGVSEQIAVYILAHALDEDTYKLWEATIKRGELPKYDEAIKFLKSRVSVLERWETTKLA
EPKQRERSSHLTSVSEQPYHIANTAVMSHPKFRCDFCNEHHLTFKCTAFNGLPVYQRMAAVRERNLCQNCLRSGHHWKEC
GSQHSCRKCQRRHNTLLHRQPRVSRITGQKQPQSSPASCENPRAFNAILPTALVNLSDNENQPVPCRILMDSGSQVNFIS
EAMADRLKLQTKAASVPICGIGASKTVSKQLVSVKLHSRISSFNANVECLIVPKVTGTVPPSPVDITEWPIPVGTQLADP
TFHKPDSIDMILGVTMFFRLLKNGQIELDGNQPDLRETHLGWVVAGHGGVDDNLQTRFPVNVGVAISA
>BEL-39_CQ#LTR/Pao 1066-3711 (N-terminal half) [Culex quinquefasciatus]
MDFKFAENKKGSCRQCDSSDDVEEFMVSCDSCDRRFHIKCVGLARTPRSKDHWKCDKCLAIQEMLDKQDALIKSLEEKCM
KYFGTQQVAQNSETNQNLQVKALEAIIDKINSINISQTSSNSLVMRQSLMDLPEFDGSYKIWPRFKQAFYETTRQGNFSD
FENINRLNNCLKGEALSRVNSLLINSSNLNEIMIKLEDQFGSVERVYSGLLNDVLALRNPKFENPQSMIDFISGIGDLVI
NMECLNHPEYLNDQRLVRDLANKLPASLHQKWLMSLNEEKMLATIKNPYTAPTFKTLYEWLKPQEKLASMLLAERGANKE
SSVETIDRVNYHGIHQLKCYLCDQNHKLTECDEFKKISLVERRKFVAEKKLCFSCCRANHLAKHCRFAEPCNTEGCKSKH
NRLLHLKIPEKKITVASKPTKDDLKKVNCHVRDSHQVYYPIIPVTLMNGENSFETFAFFDSGSSVSLIDKNVVNKLKVTG
RDKPLTLAWTNGEIKENNRSKSVQLNVKGPNGKLFQLNDLRTIKGLSLPHQSVDIARLKARFSYLENSKLESYEKAVPTI
LLGLPHAFLFKGNQELSGRFNEPIARKTKLGWVLFGSSQIEDNKKKHVFIIREVQKEDFSKNLVSKDTNENCPKGGTIKV
DQSSERKVLTTEIDNKLNICNVQTKTFDAISSQACVQVTKNKEVIIFIEDSSNLVEQNWNNQRNDYLVYFYNSKLATKVA
RYRVVMCRKANKEFGNSNSNLKLMKRNFPLKEMELYNTGNILCKFRKKTNCKLKNKVTANSDEINNLTKRQNLSHAMDVY
DRQSISFKSLMKNLWKSKYSWDKCIPEIIKLIPTNGFNQMIVNVNSNVNLIKIVSIDNLEQQAHDLETTNEVQMCKLIKQ
RV
>BEL-13_DP#LTR/Pao 258-5490 via tfasty with BEL1_DV, 1 frameshift. [Drosophila persimilis]
MDESNDVPENRVSFYKLKALSIYNKAVSLRETILNDENNPISEDALSVHLKFLEKISDSFNVTHSNLEELDVSEIGSDLS
NNFEDLAMEIEVRIRSALRRTTQNMPHHSTIRPELNVTASGNVRSRYHIPDIKLPTFRGGYTEWADFYSMFSTVIDQEPF
LSKIEKFQHLRSCLDGPALEAVRSLEVSESNYDIALDILNNRFNNKRLIFQAHVAEILRHEKVEDGSTTKLRTLSDKLHS
HMRALRSMGTMEEIAGCIIVHSTYKYLDSDTRTKWEELSPPNVIPTWDHFSAFLERRCQAMETMDQAMSIQIHSSQVGKH
KRITHSKHSLVATNTIVLECVFCDNKGHNIYSCTRFGNLSPSLRLREARKLRVCFNCLKKGHRNTSCSSGSCRTCGEKHH
TLLHINNPLPTSVNTEPANATTSPIQTDLCPGPNLSSSLVAASSPCSPPAQNLSSDVVLLATTVIMIKSRVGDLLPCRAL
LDSGSQINLITSRFAQRLQLKRAKGSVSVSGIGADSAFHTEGSVNLVIQSRTSDYFTSLTALVAPRITGNQPASSFDVSK
WEMPSNISLADPHFNKSQRIDVLIGASLFYDILCVGQIKLERGLPIIQKTRLGWVVTGGGQYSRSSVLLAASSSTELSQT
PTVGLDELVRRFWEVENCHGPATEATKEEIACEEHFKKHCGRLPSGEYCVQLPLKLSDSLLGDSYQQAYRRFLNLERKLV
RKPLLKAQYAAFIKEYVDLNHMSPVKSDALKQCKFFLPHHCVLREDKTTTKLRVVFDGSACTSTGYSLNDILMSGPTIQP
KLVTTLLRFRTFRIALTGDICKMYRCVRVSPQDSFLQCILWRDSPLEELRTFKLDTVTYGTKPAAFLAVRSMHQLAADES
SSYPIGSEVVLRDFYVDDLLTGGDTTNEVLEIIRQVSGLLAKGNFKIRKWCSNDTYVLDQTPHEDRETFVKFTDGSDVTK
TLGLAWDPTSDELLFSFCPNQVPSKPTKRVVLSTIARFYDPLGLIGPVITKAKIFLQQLWKEKLHWDESLPVSLRTTWIN
FIQQFDSMQQISFPRLSFLRSSNLEMHGFCDASMSAYGACIYAVSQGDNGVKANLLSSRSRVAPLKTITIPKLELCGAAL
LAQLMHEVSLMNFKCSYYCWCDSTVVLAWIKNQPSNFNVFVANRLSVIQELTSGMSWLHVPTDLNPADMLSRGSLPAELI
NSQLWKYGPTYLTASKDQWPSTPALPEPVLEARKTILITNCASRYLVEESKFVNSFPKMQRIFAYVCKFIHRRKSGITVE
DLRLGTELLIRLTQQSRLSTEIRALETRKDIKASSSIASLSPFLDDCGLLRVGGRLKNSTLDFEARHPIILPKNHSITSA
LIRHLHEKHLHAGPQSLLAIIRQTYWPIGGRKTVAHVIQKCVRCFRVKPRTLEQIMADLPVDRVSESRAFLVTGVDYCGP
FLYKSEVRNRPPLKCYMSIFICFSTKAVHIELVKDLTTAAFLSALRRFICTRGRPIRIWSDNATNFVGARNELAELKSLF
LSDSHQEAVHQAFLNDCIDWRFIPPRSPHFGGLWEASVKLAKHHLRRALGSSLLGFDELRTLACNICAIINSRPLFPLSE
NPADLDVLTPSHFLVGSPITTFLEPDLVHLNVDRLDRWQKVTQLQQIFWSRWRQSYLTSLQERTKWRTRNPELHVNDVVL
VKDENFPPLKWPLARILELIPGADGVSRVALIRMATGVSRRALAKLCLLPLRDEVKGMDPSTGG
>BEL-8_DPe#LTR/Pao 929-6073  [Drosophila persimilis]
MAEKSKPTLEDLKIKLKSRVKSIRRLEDRLDQGSIPLQLSELQCRSDCLNASIEKANHLQEQIEDITGDDAYAAELEELI
IVTKGKIMSLIAAFDAASETKPVSSSAPTHARLPKFALPKFSGKHSEFKNFISLFERLVHSDNSIPVIEKFNHLISCLSD
EALGTIKAFQVTEANYEKAMAGLKRVYDNDYLIFTNNISTLFNLPRMSHQSASSLRTLIDTVSSIYGSLLSIGDDTTISN
AMLIHLVLNRVDPVTKQKWDEQLTYEKLPLWSDFEKVLNRRYQHLSAEESTKPRQDKVMPSKQHNRSSFACSSTSTNSRT
QQTCSYCNSGDHVVSNCPSFSRLSVMQRFEFAKSASLCINCLRKGHAVVKCKANKCRVCSRSHHTLLHRYTVSANSLALP
PPQESPSPPSNQNQPSTSHVLHATALDRVILATSIVSVRTKSGEHILARALLDSGSQTNFITEDLANRLQIRREESCINL
LGIGESNSQVKDKIHTVVKSRINGSEFSFDFWILKSISGYHPDQSVNVTDWRIPENLPLADPYFYKPQRIDMLIGAESFF
ELLAVGQIKQGPDFPTLQKTLLGWVVSGKYVSRSSAPQITNSLSCSEELLVSIDRTLKKFWSLEEMPSTKKIATPEHKLC
EEHYRKTTQVLSSGRFEVRLPFKSDPNCLGNSFEVAKRRFLSLERRLHRDPELKKMYLEFMEEYLSLGHMSPTDNTIPST
PHYVIPHQCVLRPQSTSTKLRVVFDASSKTSSQVALNDILMVGPTIQEELYSTLLRFRLHRFALTADVKKMYRQVMVNEA
DRQFQLIVWRRDPSESLRLYKLNTVTYGTGPAPFLAIRCLKRLSESAKLSFPRAANVIGSDFYVDDLLTGAACVEELRAI
KSEVSQVLQTAGFELTKWFSNSPEITASESTAKPITISDSESTKALGISWLPTDDAFKFKIDNSVMGLRATKRNILSVTS
KLFDPLGLLSPIVIKGKILLQELWLNKLDWDESIPLHLETAWNKLKNTLSQLEDISISRFVYSDPMSPVQIHAFADASMR
AYGACVYIRSRTAEGLKVSLLTSKSKVAPLKTKTLPRLELCAAHLLADLCHRIKPLLNVPIERVVYWSDSEVTLHWIRSH
PSSLSTFVSNRVAEIQEWSDDATWRHVPTKQNPADIVSRGCDVDEIVQSIWFEGPSFLKEEEENWPKNAHFEHSDDLQLE
KRKTAVGLTAAVRSSELLDVIEGFSSHLKLFRVFVYVFRFIRKCKDPSLKFEKTISPTEYNEAFYKIVEIVQHHEYQGEI
EKVRKGSTIGPSLQRLNPFIHEDTGTWCNFSLLRVGGRLAKAPISYDAKFPLLLTKRSQFVRSYIRHLHHSNFHVGPRAL
VSILRQSVWIVNAQEVCRQTVRSCMRCFKCKPRLLTQLMGNLPADRLRALRPFSICGVDFCGPVHTTLKIRGRPPYKSYI
ALFVCFASKAVHLEIVSDLTTDCFLLAFQRFVGRRGYPQVVHCDNGTNFVGASRHLSALRIRLKEQGDAIRDFASKNGCE
FAFIPPRAPHMGGLWEAGVKTAKSLLLRAVGSALLTAEELATVLVGIEAIMNSRPLGAISQDPSDGEALTPGHLLTGGSL
IAPPALRTPDQESLSCLRRWRLVSSVRQAFWQRWSREYVLGLQIRGKWHQQQPNLEEGDLVIVAEDNLPPQEWLVGRVIA
THAGEDGMVRVVEIRTSTGAVFRRPIHKLAPLPMC
>BEL-8_DMo_p2#LTR/Pao 5931-7243  [Drosophila mojavensis]
MFFDIGTANRLEENMQTIIKNEKRLSDYVSNQTSIINATSNLVQTTTEEVNKNFEKVTMEINKMANTMKDNFFVYKESIK
FFMLINQVRSWIEETEDLQSAVISLVTDINQGKVHPSLVEPNKMLAELNKIQQKLQRNQLLPGENSPKRLQLVYKLMKAQ
AIFKDNMLIIDARLPIYINQHATLFEAIPIPLVLKGRKVIPKTKTKFLIFNTEINAYHSMTEMEVSHCQHEDEITYLCEG
SWAWEEADDESCEISPIKPSTKQPCKMTEYEGDTFVKKLNGKNRWLFKVFKEKSAHIICGNYEEIVQLPNQGIIELYAGC
SARIGKINIITPQDLVSTNTARYSPLFLKIIDQNVTWDSTPLQHIVVNNSVELQRVQQSIEDLHRQKVHIEDLVFHTMNG
HISLGLVIIIISLFIVYLIKKRNQRQQLLAITFSGPPQ
>BEL-9_DWil#LTR/Pao 792-5413 via tfasty with Nobel, 5 frameshifts. [Drosophila willistoni]
MGPVNTSDMSFMSSSMSPTVVHSQRLSKLKLPSFDGKYSAFKRFKSSFLNLIHNDHHLPTIDKLNFLLECLSGPALEVVQ
SFQVTEQNYESSFHDFISSLFNLPLVKQPEARLLQKLIDNASAIRGSLLTLGSTEEIMNNIMIHILLTKVDAETKGVYDE
KQSFDKLLTWEEFCTILHRRCQFLESHQTGQLGQRNSSLGGKRPSTSKAFLNINSQCLHCHSTAHYVSKCKSFGELSLQQ
RFETVKRSSGHRVKDCPSLSRCKMCRSAHHTLLHQFAPTPIKNLSSSIQSVNPITNSQSTSLLTNTDKKGMLPTALVHIM
DKSGQLHTVLLDSCSELNFITEETAKRLNLDRTRVSQEFSGITGSSQGIKHNAFATIRSRHSSFTWSANFAVIKKTCAQQ
PHEHIDTSNWTIPTDINLADPYFNEPHKIHILINTNGLFAAIVDGQQVLGEKMSYLINTEYGWICESHFCKNAIVKSDGR
LQVRLPFKEHPEQLGFSYDNAVRKSLGNLLDRDDQLKKAYVDFINEYVKLGHMSTKTVASHNEPHYYIPHHCVLRPKSVT
TKHRVFDASAKTSSGKSLNELLMIGPTIQQDLFITFLSFRLNRYALTGDIAKMNRQFVIDPRDRRLQRIVWRPTKTEELK
TYELNTVTYGMSAAPFLAIRGVHHIADLYSHDHPIGAKTLRNDLYVDDLLTGADCVTELQHIKNDTVDILAQAGLHLTKF
ISNCKEITKTSEDEVFFAMEDQDTTKTLGMTWMPFDDHQEPFTKRSILSVVARMFDLLGFISPVIVRCKILMQDLTLKGL
DWDEPVDGRIKERWKELLQDLKDLSNLQIPRYVNTSKSYRCEIHGFADASERAYGCCLYVRSELPSGVKVTLRVAKSKIA
PTKTQSLAKLELCGTLLLSRTWRKFERTLKLYIDKVYFWTDSKIVLQWLKLHASTLNCFVANRVSELQQHREEIIWKHVP
SNKNPADIVSRGCRTSELQTSMWITGPTFLNLSKAEWPILRQPLPPPIEVRTKSALLCSRADNANSQSILNMIINNSSSY
IPIVRIVSYLYCSVNKVKPDRTLSSSSIADIRITETEMYQSFWKIVALIQQECYADKISLLKNKQTLTPCLQRLTPFMHT
MTFGQTAVCVMRVGGRLENGDLPFNAKHQALLPQNHRFTKLYIEFLHNKNHHAGPKFILSLLREQIWVINARALIRKVVR
SCIRCFHFKPRLMTQLMGNLAADRLRAERPFLVTGVDFCGPFFTSYRIRGKPPYKTYAAIFVCFASKAIHIELVSELSTN
AFLLCIRRFVARRGVPLHMVCDNATNFVGAATRLAEFKSKLFNSDVIDHIKTYSSIKGFKFCFIPPRAPHFGGLWEASVK
SAKTLALKNISNAFLTFEELLTVFSDVEAILNSRPLAPTSDDPKDFSALTPGHLLIGTELTSVPESLPYHSTDPPGTELR
HLNRWQRVTYLKQQFWTLWARDYVHNLQQRSKWIYEKANVALGQLVIVHEDNVPAQHWPLARVASVHAGPDDKIRVVELR
TAKGIFKRPIHKIAPLSESFI
>BEL-13_DAn#LTR/Pao 203-5479  [Drosophila ananassae]
MHADASEHARQLEWSMNIEVCQICGNKNETASENWVQCDVCGRWYHFECAGVEDDIESKDWSCDFCLAGCSHIAPYGSMQ
RSPVQPQTREDAMATPEPHDKALAVDTLIDMAGSGENTHAQEGNPERNRNQLLLKMLEEKRQSEAKFIEEKYKLLMQMNP
TDVPEAGMVRATDSPTSSQIAARQAIPKDLPTFSGDPEEWPLFISTFEHSTTAAGYTNVENMLRLQKSLKGKARELIRDK
LLLPNLVPDVISTLKMFFGRPEHILEKMVEKVRRLAPPKDRLEALIEYALAVRNVCAIMEACDLKAHLNNPMLVKELVDK
LPNQHKLNWAMQPRDDRIAAVKAFSDWLYKIAEAASSVVAPSFYKSGAVNTHNSRATQGQARSNASQTEAAQQQVQSGCV
ACGDISHRPPQCQVFLNLDTQHRWQIITSSKACFCCLKVHRNRCRTGNCGINGCTRRHHELLHTEQGSTQNLVSTHQDDN
YGSQFFRIIPVKLRNGSRMIEIYAFLDEGSSVTLVDASVFQRLGIQGQAAPMCLQWTAETTRIESESVKASVQISETNSD
RFYWLNNVQTVQNLALPKQTVEMKELRSRFQHLRDLPLESYSAQPTLLIGSNNWKLAVPRRIREGKWNEPIASKCMLGWT
IQGSTNPQRSIVMHHCDCDWQELHDDIKNHYSLETLVPRKLYSAEDKLAVKILETTCQEKSGKYEVGFPWRGGIDKLPES
RGNALKRLTCIKKKVSQEPDMYDKIDAQVRNLLDKGYAVKLSKEETCRENSRTWYLPIFIARNPNKPSKLRLVWDAAAKS
HGCALNDYLLKGPDCLNPLIEVLLAFRVNKIAICGDIAEMFHRINIREEDMHAQRFLWYDRSSDKVETYVMRAMTFGISC
APFIAHFVRDKNAEAHQEDFPLALNAIQKAHYVDDYIDSMRNEQEAIQTTRQVIEVHRRGGFEIRNWSSNSKEVLKSLQS
NGNVGSQEPVDFCSTEKILGMSWDPHKDVFKFLCRFARLKRDVLAENIVPTKREVLQVLMSIFDPLGFLSCHTIGLKILL
QRIWRLNIDWDQELPEKILEDWRLWKTLLGQIRIFEVPRCFSPDTSDPRQTELHTFVDASEYAYSAVCYLRVAMDAKVDV
SLVIAKSKVAPLKPLSIPRMELQAAVMGARLAHKVMSTRNLRIDNATYWSDSKTVLQWLTMDPRNFHQFVMHRVAEILET
TQVEQWRWVPSKLNVADGATKITDQTQQKTWITGPGFLKAESSHWPTSTKQESIIDTSEIRKHVMTTCARSVVMFNAHHF
SSWRRMYRAVAIIFLFVDRLRAKCAKQDMPTATTMDHVRKAKILLYKQSQAIAFAEELKVLSVGATLRKGNRLVGLNAYV
DNDGVLRTRGRLNSIDIAEDAIILAPGCRITNLIVRSFHEKYHHLAHETAINDIKASFYISRLRVLYKSVRSTCQRCKVD
SAAPRPPQMAPIPRARIGSFQRPFTYTGVDYFGPLLVNVGRRKEKRWVALFTCLTLRAVHFEIAYSLDTSSCIMCLSNFM
ALRGTPKEIFSDNGTNFRATEKAVREELKKIEHDKITIKFDGIKWRFNPPGAPHMGGAWERLVRTTKGILKNICPSYSFN
DEGLRNALMEAQFIINSRPLTFVSLDTEDDAALTPNHLLLGSANGYKPLPKEGMNLQRRWIETQRFGDRFWQRWIKEYAP
VLTRRTKWFEKVPPITIGSIVVIVDELLPRNLWLKGRVIDTMKAKDGQVRRVTIKTQHGILERPATKIAVLDVGLEDGN
>BEL-11_CQ#LTR/Pao 424-5916  [Culex quinquefasciatus]
MFLRSGRVKKVLFPSPSTPTGVLSAPLSICEQKEAAERRRREREMAESIDALDQCCQAAKAKVSRIRKAILDAKQDHKKF
AYNALKLYAKQVDAAYDEYNSFTNRIYLVDPKKKQEFETKFIDFEELYEFVRIALSEMMQQYEDAEKAAAEVAAFEREKQ
LLALKFRNDTVAVTNVPANPVPYQIPPSLLLQQTPLPTFDGRYDQWHKFKARFCDIVDRCTTDSPATKLHYLDKALVGDA
QGVIDEQTLNDNNYEGAWRILIERYENIPMVVHGHVTKLLNLKPMARESSLELRRLLDDCTKRVESLEFHKLKMDKMAEA
IVITLLTSKLDPSTRRSWEASCDYGKLPVFKDTVAFLRKHSHVLERCEQSSTVTKPKVAALRTQTPTVTSKAHSVTVSKT
NEGCAVCGATHSVEACGAFKKLIVEERYSKAKQFGLCFLCLNRGHRTNTCKKTDLCTACKKKHHALLHPDEKKLDTPEAG
RRSAEEQETSSSCPKPPLTAAKCSIPNERTKSLQTKQVLLATAVVLAYDSSGAAHKCRVLLDSGAMANFMSTRMAELLRL
RKESANVPIDGVNGMKTVVKYKVSAKVVSRTTSFETTLEYLIVPRVTGALPAMKIDPKGWHIPESMLLADPKFYEPARVD
MLVGAELFFDVLREGKLKLAPNLPLLQESQLGWLVSGPVAETADIGTVKVCHIGALDDPEEQLTELLRRFWTIDELGGDA
SPKPEDTCELNFLETHRRTNDGRYVVKLPFRENVGELGESRQQAMRRFVALERRLEKYPVMKQMYVDFINEYLALGHCRV
VTSAEPTNADAYYLPHHCVIKPDSSTTKLRVVFDASAKSSTDLSLNDVMEIGPTVQDSLFNILLRFRLHKFVFTADVPKM
YRQVIVDEAHRKYQRILWRDNAGQPIKELELNTVTYGTAAAPFLATRAIVQLARDEQKDFPVASKVVEECFYVDDVLTGA
DSLPEAKELQRDLIALLERGGFQLHKWCANDESLLEDIPVDAQEQQFNLDDCNASGVVKALGILWDPVGDEFMYHVQPFN
GCSEVPTKQMVLSEMSKLFDPHGLLAPTILIAKLLMQQLWQANVGWKDPIPQEQLRTWNRFRSELSCLNSLRINRRITVD
DAVDVELHGYADASKVAYGCSIYLKSFKRDGTTEMQLICGKSRVAPMKELQRNEKQDATPDEQTIPRLELCAALLLAEIL
EKVRETLAIPIEKVKLWSDSKIVLCWLKRMKPGTPVFVQNRVKKILKLFPAHMWHYISTLHNPADLVSRGVFPAELIHCD
GWWFGPVEHAEPWQQNCEAELEPEEHGEPLQVVAAVLPNEPKKQLDPYDVILEQSDYRRLQRVFAHLTRFIFNCRSKQNK
VARRTGRLGGRDFGEAQRAMVSVVQQFVYKDEIDCIQKNRAVKGKLRNLNPIYDKDDKLLRVGGRIRNSDLPKDQKHPMI
LPENNHFTEILVKALHKEHLHVGLNGLLAVIRRRFWPVNAKRTIHRVLKGCVDCFRVNPTDVQQYMGDLPSCRVTASQPF
ARTGMDYAGPFYVKVGRMRSKVKVYVCLFVCMAIKAVHLELVGSLTTEGFLAALQRFVNRRGTPSELYSDNGTNFRGGNR
ELSELVELLRSQILQKKVDAFCQPRGITWNFNPPKAPHQGGIWEANVKCMKSHLCKTLTESYLTFEELNTLLIQVEGILN
SRPLVQLTDDPFDYEALSPGHFLVGRELTAVAEPLYDDWKESSLSRYQLVQKRMQHFWKRWSSEYVTGLQKRGKWYKEPA
LLRKGMLVLLKEDNVPPKTWKLGRIIETHPGKDGIVRVITVRTGNGVYKRPTTQIAVLPIDDNRVPAESQE
>ROMANI1_gagpol#LTR/Gypsy 1127-5401 via tfasty with RETROSAT2_gagpol, 1 stopcodon [Triticum monococcum]
NQQNNNNNPPPPPPVDHLARFLRLNPPVFSSSTEPIVADDWLRKIGRELTTTRCTDGEKVKFAAHQLEGPAAAWWENFTA
TFQVDTVTWDQFQQAFRTSHVSARAMAMKKREFRNLRQGGRTVGQYVDDFSKLARYAPDDIATDATKQEKFLEGLNDELS
MQLMVGSFRNYQELVDRAIMIEGKQQQIENRKRKYGxGKYNSGAQQKPRFTPKSGFQFQHTHGGGSSHNHNGHKNGNGNG
GSNGQNRTTPSTPTKRDLSQVTCFKCSKTGHYANECPEGQNGNGNASSGKKPNPFNRGQVNHVSVDEVEDQPNAVIGKFL
VKSFTALVLFDTGASHSYISRGFVDKYNLPAQALRSPMLVSSPGVEFMARRWCDRLPLRIGNYVFPSDLIVLESQGLDVI
LGMDWLSMYGGNIDCASKSILLTTPEGRRIKYVSRHVPNRTQVNCLTGVVQEEVPVVKDFPDVFPEELPGMPLDTDIEFL
IELLPGTGPISKRPYRMPAKDLVEIKNQIKELLEKGYIRPSSSPWGSPVLLVEKKDGSLRMVVDYRGLNEVTIKNKYPLP
MINDLFDRLQGAKVFSKIDLRSGYHQLKIREQDIDKTAFTTRYGLYEYTVMSFGLTNAPAYFMNLMNKVFMEFLDKFVVV
FIDDILVYSKNEEEHKEHLRLVLEKLREHQLYAKFSKCEFWLKEVGFLGHVISGEGIAVDPAKVETVTEWEAPTTVGEIR
SFLGLARYYRRFIENFSKISKPMTELLKKDTKFKWTEECEASFQELQKRLVTSPVLILPDQTKDYEVYCDDSHRGLGAVL
MQEGRVVSYASRQLKPHELNYAMHDLELAAIVHALKTWRHFLIGNHCEVYMDRKSLKYIFTQKELNLRQRRWLELIKDYD
MRLHYHPKKANVVADALSRKSHVNTIITGSIPKELAENLRELSLEIVPKGYVAALEIQPTLMDKIREAQKSDKEIPSIKE
KLSKGKAKGFREDEHDTLWFEDRVYVPNDPEIGKLILQEAHDSPYSIHPGNTKMYLDLKETFWWTGMKKDIAAYVAVCDV
CHRVKAEHQKPAGLLQPLPIPEWKWDKIGMDFIIGLPRTKVGYDSIWVVVDHLTKVAHFIPVKTTYTSAKLAKIYMTRII
CLHGVPRSIVSDRGTQFTSKFWNQLHETLGTRLEFSTAFHPQTDGQTERVNQILEDMLRACALYYGSSWDDNLPYAEFYY
NNSYQTSLKMAPFEALYGRRCRTPLSWDEVGDRQFFGPDLIKETERKVKLIRDRLKVAQSRQKSYADSKHKETVYETGDR
VYLRVSPLRGVKRFGVKGKLAPRFVGPYKILQHMGEVAYKLELPEGLSGVHDVFHVSQLKKCHTEMAEVPLRDTVPLEAI
QLKDDLTYEEKPVKILDFASRVTRSKVIKFCKVQWNHHSKDEATWEREEDLLKDHPHLLSSQPES
>Gypsy-19_AMi#LTR/Gypsy 23-4212[Crocodylidae]
MENPDMAAYANAQPVPMTTADILGQNLQALTQILDSQQQMLDRQQDWLRHSLVSFKMPKMTKDDDPEAYIEAFERHALMT
GLNQEYWASQLGALVVGKAQAAYRALPRDEARDYERVKQAILYRLEISPDHYRRLFRAKKGPDERRPRVLLQLLRDLLDK
WVSPAGSDREDLADQVVLEQFQNDLEERTQRWVRQHSPRXCEEALKLAEAFAAAEASYPRERRSPGPVTVPPKEPEWRRP
PTRGATRDTVCFRCGQNGHFSRECPSQSTERWIPADRPRGPTDRRRGPETSEPMDCSYAVGEGNATWSRPVIKAWVDGRP
VQATLDSGCAQSMVRADVVRPQAGRKAPPVTVACLHGEAERVGRQWIQLRVMEHQGELLVGVVPKLACEMLLGRDWKPIY
DVLDRVRDAEQARKKMWNREGWLGELEEDHESAEEAEGLDLNDFTSSVQFREAQGEDQELGALLWERAQDSRDGSGSPSE
EQPCFEVRNHLLYRIPGHRREGSTEAQLVVPTRFRQVIWQLAHASPVGGHLGRDKTLAKVSRWFFWPGMGEEVARRCAAC
PECQKTRTERPARAPLQPMPIIDTPFSRIALDVVGPLPRSSSGHQYILVMVDYATRYPEAIPLRAVTAPRVAEELVKWIA
RMGVPREILTDQGRNFMSGVLRVVCRTLQIRQIRTSVYHPQTNGLVERLNGTIKRVLRRCIQGDPRKWDLLLPLVLFTLR
DTPQDSLKFSPFELVLGHRPRGLLQVLREEWERDGGPLQEPAVYRQEFQQRIRMAQDIARENLREAQARQKEKYDSHTKE
RVFEPGQRVLVLLPTSTSKFLTQWQGPFEILRRVGPVDYEVHRPGHLREKQIFHVNLLREWQEPAGWVTFVEADEEDLGP
QGLRKGVAPSEKVETLIRVGEELSGSQRREMLELIHEFRDVFRKEPGWVRGAVHAIKTPPGAIVREKWRPIPHHLLKAVR
EEVSSMLKLGVVRPSRSPWRSPLVPVHKPDGSLRLCVDYRRLNALAVFDAFPMPQVAELIERIGEAQYISTLDLAKGYWQ
IPVAPEDRPKTAFGTPWGLYEFVRMPFGLHGAAATFQRLMDQVLAPHAEYAAAYIDDIVIYSQTWAQHKKALRAILSELR
HAGLTANPQKCALAQRETKYLGFLVGRGTIRPLADKVETIRNFPAPQNCRQLRSFLGLTNYYRRFVPHFSELTTPLTEAL
KGRRNGTVKWTEEMARSFERLKQALCEDVIMHTPNFKKPFILQTDASETAVGAVLTQEEGGTERPVAYASRKLSPAERRY
ATIERECLAIRWAVDHFRYYLMGREFKLVTDHAPLRWLSTAKTDNARITRWALALQPYKFQIMYRPGKSNTVADFLSRCD
SRDSAEHTEYQTKGPVNPPGTTRGDETGAPQGILRGG
>Gypsy-18_NVi_env#LTR/Gypsy 10339-12348 Related to envs of Roo (Bel/Pao element), and the Lottia gigantea Gypsy element Gypsy-1_LG_env [Nasonia vitripennis]
MKILEIIIIIFNLLNVRRCEPMYQIEPLNPNPGIYFEKLDVIRIKKATWKLNIYIDVEDFMQTHNATDSYKEIFEICKKV
MEERKCRHALAIDLLQIKEQELAKTQEKIKETIASLGHTQYPTARIPRSIRTKRLVPLGIIGSISSSLFGLVTNDEVDNI
NKNIDQLFQDQSKMVHLLDENSHIISAKFEELYNITSNHQKVLQGFEKELTKTIKTILREKDQMKYQVEVVIYVKRLEST
LDHVIKSNEKLLEILRKLKEGKVHPDLMKQDMVQQMNMDVKRVSQDLEFPPPPEHMRAEELARISEIDAIHQNGRTLAVL
HLPLVDRMPYQLYKMHPINIPQNMKNETMGQAFIRPSHEYIAISYDHTRYIKFNEDQRQMCIKTHYADICPILGALRNVP
ESRDCEITLLLNPSQKAITQCDIRYRLSEQTQWTYLNYDKSWLYSTIRPEILNIICQDKHENKVTIKDAGIVHIAPICIG
TTAEATITGEVTRNTEFTYVYKPEINLKITDIYPLLNQEDTSLEVHSSENIDVLGPNMANNDGRPLHEIVSKLREIGEHK
RQNYSTNTVLYGSMTVQLIIVTIIIIIIIKMKCLRKWRCPKNKKRRNPSPRINTKRRKIETKDEEIELEDILGSHKNHAI
LRLDRENPKTNAQSTTKKFALPKQEAECS
>Gypsy-19_BG_pol#LTR/Gypsy 1234-4380 [Blumeria graminis]
VAPPQSRAAELRRLDNWRRQEPIKTLQQEWCEFRTKMETPSFLIDAIINEVQCEEVLVDNGCQSYASVNDKFIRKHNPQT
VNIRARKMEGFITGAHSTITQAAKFTVDLAGFKKDIWAYIVPYQTQSMMLGRAFLVHNRVHVNEAAEALEFEKSGHIVPN
KSRLSKVQSRPTLISPKTYAALIKQQQLSHSSIQAYAVTLADIDKALAPKKDVDPVDYMPNWLGPEFVVNFQPEEANKLP
PHRPEIDHHIPLEKDENGEDKSVPWCSMYNYSRDELLVLRKTLTELLEKDFIRVSKSSAGAPILFVKKANGGVRFCVDYR
ALNAITKKDRYPLPLIRETLRTLSDAKWLTKLDVSQAFHQIRISKGEEWKTAFRTRYGLYEWNVVPFGLTGAPATFQRYI
NWLLREYLDDFCTAYIDDILIYSKGSQEDHRDKVKKVLSILREGGLTLDITKCEFEVRCTKYLGYIIDLEHGIRMDPEKI
KAIREWEVPTTVKGVRGFLGFANFYRTFIKGYSDLVVPLTQLTHKDIPFVFDEKCKHAFERLKELFVQDPILATFDPDRQ
TVLEPDASNWAVGGVLSQYDDEGTLRPVAYFSKKNLPAECNYPIHDKELLAIIRCLDEWDAELRSIKDPFQILTDHRNLE
HFMSTRQLNERQVRWAQKLARYNYLLKYRPGREAARPDALSRREQDIPKTGDSRLDERTAKLLPNWEEVIKAYPIVTAQI
GSPFPDEELTKLWNHALEVDETYTEIKNTVASSATQWSPTLKIRGVELSQCRIDDQGAVRRSGRIWVPNYEPLRTKIIQT
VHDSHAVGHPGRDTMIDVLGRQFFWPGFSQDIKQFTRNCDVCGSATVWRQKRQGLLKPLPIPDQIWRSLSMDFITDLPNV
DGYDTCLVITDRLSKGVIFEPVNSMTAEATATTFLRAVYRHHGLPKDIVSDRGTQWVNAFWKKVCELLNITRRLSTAFHP
QTDGSTERMNQELQHFIRVYCTYQQQDWKDLLTDAELAINNRSASSTKVSPFFLTHGFHLEPIELAQDLTTADRRRQPRR
SRRAPSYEA
>Gypsy-20_DWil_env#LTR/Gypsy 5353-6631 via tfasty with Gypsy4_env, 2 frameshifts. [Drosophila willistoni]
MTMKITDYTKADFIQILDGDVTVWKEYSYLGHTTNITSYRTYADETRKTIEFFKEDHIKRIILTDIREIDALLETMTVHH
RGARSLNILGTALKVVAGTPDFDEQLIESENKQVKINNKLQEKLNAITNSINQISKTENVNHEHFYETILAKNRMVISDL
ENLILTTTLAKANLLNPIILDDLDVNEMTNKNLTNISVSDLLDVGSIKVFRNFNILYFLIKYPHPESVCKKISLYPVERD
NIILDFNNRNVVADCGMELFSVEGCQLAVTTTFCKRLATNGCTQQLVAATQAHCSSRPGHLEPLIVVNEGMVIINDATMD
IIDEVGNEKRVNGTYLVTFTGKITINQTTFVNKYDVLRKKHITGLRSKIISGPVLSSSVTIGIVVIWFAIYLAIRRLQRR
NLVTTLQKSLDLQKSGDGLHLSEGGVN
>Gypsy-19_NVi_gag#LTR/Gypsy 1-1179 N-term truncated, C-term overextended. [Nasonia vitripennis]
WRSDRDLIKNISPKIFFYDKLYTEHRLELKPGIFFTMRVSWIYRLNKEQLISELRGKNLNCEGTVVELRQRLVXYVRKNP
QDFVGKAEDPTGYDEEADLKQDLELERYELIQRTLEETRNAGRSSTPTGDPPEIPPGENKVLDQIRKWNCHFEGRDVYSF
LERVRELQASYGFTGEQLLQGAPELLRGEALQWRRNYASDCRTWEELEIRLRNFYLSSGERRNLTRQVAERIQKPNENIR
SYCNALTTLMRRRGGYTLIEQLDNIYYNMKPELQLRVRREEITDVPQLIQRIEEYEDIAAKLREQERKTAINSASTSKNT
TDYYNRAECCWRCKQRGHSRADCKNVARKFCSVCGKDGVLTRDCHGFPDRSGNAPRDGSTVAGDRPKTADTS
>Gypsy-18_NVi#LTR/Gypsy 5219-10316 via tfasty with Gypsy7-NVi_pol, 1 frameshift. Includes 300 AA (ca. 800-1100) insertion with respect to other Gypsy pols. [Nasonia vitripennis]
MIDNGASVNLIKLSFIHDDMPINMKDVRNLGGITTGTVPTLGAVYLLIRNTPVKFHIVTDDFPTPHDGLLGRNYLKKEEA
VISYFNNALMVGGDVMHPMPFLGQEKEYREKRKRAHNSYKTSNVLQVEDKKDDKEAPVTDVSKNEKTPAKTKHVLKARTR
QVVRINLIRSELKEGYIPRIDVGNENVFLGEGVVINDNNTCKMMAINTSEEDVMIEVDAKELIPFDTEPNFLEETDSEFN
GEVIVDRIKRLEKVKESIRRSHLNQEELKIVDRIIEDYLDRFLLPGDKLPCTDMIQHHIHLEDDIPINTKQYRHPPKHKQ
VVRESVEKKLRDKIIRESNSPCNSPIWIVPKKPDSHGNPRWRMVIDFREINKKTIRDAYPLPNIADIMDQLGGATYFSIF
DLASGFQQIPMAPEDCYKTAFTTLNGHYEYTRLPEGLKNATATFQRLMEKALRGLQNIEMLVYLDDIIVYSKDLQEHEQR
IRHMMDRLRLAKLVLQPDKIEFFRREVGFLGHIISSRGIEPNPEKVEAITKLPTPKTAKNVRTLLGMFGYYRKYIKDFAK
IAKPLNDLLKKNVKFEWTEDCEKSYQILKDCLVREPILQFPDFNKEFTLTTDASDYAIGAVLSQEKDGFDHPVQYLSRAL
NKAERNYSTTEKECLAVLYALHQFRPYLLCRKFTLVSDHEPLNWMHSRKDPGQRLMRWMFRFTGYEYTFKYKPGKLNKNA
DALSRNPPEMTEEEINKNLPSIKIMVIEEKQSKQEKAAASVAKPAKGIVQPRTRIQSTGDIANKPRGRGRPIGAKTNKEA
PKLEHSVIAQRTRARRAQVQSPVGQYIKQGAIPRVPKPVASRKATKPGKPVTAKPTAETSTEASTAETSSIQLKEIPESS
TDADSDTSMTVNPSRRSWLSSTTNEDTDSEKPPIPDPRYSGLRQEDTETTEEETEDDEVFSLEGNQDKTISNIAIEVSAI
EGSNTEESSEDESIKNLSVKTTLTREEVEEASRKFEESMKRYEMDKDTNTTESGTEIAIQLQIPSHFSDDDEVADEVREA
IYTSDPRFQTEEEIDIDNVWRKSVQKLIKRARQKLQETTREENSGSDSDVESLADIIMPPPRKTLSVTPTITSGSPTAKS
TPQNKTKARRKLGVLSEIEAEDGSIIDIRFSKPPEITMPFLLPTPPDLEPLNKDYTPTENDHESEDAPTHITFKKIPQNI
ITVRECITHKRDNIVHFLSADCDNTWPVTRLLVEIGAIDLTKIKSKKPKIGQILVTPFKKHHIFTVIIKDKCFNVIKIEN
LNKGLRNLKETLINKKITSFRIARKGDILDQLESPIILDVLYKHFHGSRIRVTMCYGKAQVPAEKHRKEIISHLHDSLTG
GHKGINQTYQKIRERYYWPGMRNDVQDYIRRCAECQEQKIERFKTREPMIITDTPIEAFDKVSIDTVGKLKMTPRGNCHL
LTMQCNLTKYLIAIPIKNLNATTIADALAKYLICQFGAPRAILSDRGTSFLSKIVESLLKLFKINHLTTSGYRPQTNGSL
ERSHAPLIEFIRIYSERYDDWDHLTPFATFTYNTSVHAATNFTPFELVYGRIARFPLRIPSDEKLKTYNVYMRDLVLRLE
EMKILAGETQIANKIKTKDRYDEKVRAFKGRVGGYARLINEPRVSKFDAYRNKPLRIIEFLGRKNVLLEYPNGKRIRKHI
DKLKAVEDKSDNEDSDSFN
>Gypsy-16_NVi_pol#LTR/Gypsy 3508-7120 via tfasty with OSVALDO_pol, 1 frameshift. [Nasonia vitripennis]
MVALLSSESRQPTISPNEDESRWWVQVGIGGFRVRALYDPGAAMTVMGSLGLQIASACGRPLRQRDGRQAQCANGQTSPI
VGFVDLPFDVAGVQRDVTVAIMPEATNECLVGTNFGRLFGAVHDPNENVLYLKKERKIVQLQVATIATAGAIDIAAVGLA
YVSDDEHAQIRRMLDSILPKSNRTIGRTQLIEHGIDVGSARPIKQKYYPVSPKIEEEMYQQVRELLAAGIIEPSDSAWSS
PVVMVRKANGQYRFCVDFRKVNALSKADAYPLPNMDDILRKLQKAKYISTLDLSSAYHQIPLKPEARPLTAFTVPGLGLF
QFTRMPFGLAYAGATFQRMIDEVISPELQPYAYSYLDDIIIATETFEEHLEYLEKVLQRVNAAGLTINRDKSVFCREEVK
YLGVLVNHDGFRPDPEKIAPIVAYPAPKNLKQLRRFLGMASWYRKFLQEFATVAEPLHRLTKKGRKYEWGTEQQDAFQQV
KALIASAPILHRPDFESQFVLQTDASDTGLGAVLFQVINGEERVLEFASRTMSKAERNYSVTERECLAVIWAIRKFRPYI
EGYQFKVVTDHSSLRWLCNLHNPTGRLARWALEMQGHVYTVEHRKGLLNAVPDALSRMYEEDAVPVEAVGWASETQDEWY
CEKVREIQLHPSKDPLYKMYGGQLYYFCPDEKLPASMNDDTAWKIVVPKEKRAEILRECHDEPSAGHQGREKTCARVAMY
YYWPGMYTDVAEYVRRCFVCQQCKVEQRSPSGLMGKRVITRPWQIIAGDVMGPKPKTARGNEYILIFEDLFTRWIECIPI
KRANAKTILQHLRERVFLRYGAPEVFLSDNGTEFKNKAIDQYLLSDNGTEFKNKAIDQYLREQGVRHELTPPYHPQANPV
ERVNRTINNMVRALIEENHNTWDERLSDIAFGYNTVPHSSTGVSPAILMYGTQPRKPSAARREQDAAAEEELQRRAIDAW
HDRMWDLSQLREQASQRTQDAQDRQKRYYDAKRKPASYKVGDLVMRRNHVLSSGAEQRSAKLAPPYIGPYKIVEIRGTNT
YRLVDEMGEQVDLAPAAQLKPFYSSATDEESQKSEEDGDAQPPRDASVDAGTSEVPSRSERDSVCEQSDIASEASEVADR
PKRXKKTRVVVINPATKKRGRPGKKVYTARRVRPTPETPRVEVDTEKRRPGRPKGSRNRGHATTTTNPSTSPRKTRAQRA
ADLS
>Gypsy-16_NVi#LTR/Gypsy 1143-2477 [Nasonia vitripennis]
GAATSLLRNRETSFRRRRHTNMAKKVEKVVENWCLGIDEEEMDDALESMQLKPDGKRLDRVARLNRWLLGEYTESDFRES
LDASTVMARVKREELRKSFIDATAEQVSTRSIYTGDYDAEQPHPLKLLQQEIEANEVVVTPAIEMNYGQPAQGLGQPTGP
NLQLLNAMTMRDAFAEMPVTEESEQAQAPVSTPEDQARLTAQEAQGRDQNRIVTIEVPTGNLVTTVTTTTTTTTTTTTTT
TPTTTASEGKGEYVLQNGKFRSVKVTAPRAVMGAAAVTGGLDTRSQQSAATTSNRPLNRGYGEDERCSAQYAQSHEVSAQ
NSVAQNDLLSQSIAENTATMRALMCKMEAMMSQWPTNIASSTRVEPPASESNPQNSRRAGHVNFQDTYSINHMNHSSFRE
DAGAVAGGASNSWIPANPLYSQPPVVARGGGGCECDERAYASAE
>Gypsy-17_DBi_env#LTR/Gypsy 5468-6808  [Drosophila biarmipes]
MISIMYLLLLVATTKSEIMDYTNHDFLLYKDTKDVLIYESHADLFHITNISFYREIINLETEFLKGHDNKNFLWEISHDL
EIIKILISQVIPSRSKRGINEIGTIWKWIAGTPDHDDFITVQNKIDDLIQNNNDQFVINSKIFKEIKSLSEQFKTAFKNQ
EIPLRKYRLRLLTYDLMNLMDTITLAKIDVFNTKILNNDDILEIYKHEDRPVVITDLLDISEFKIALHRCDVYNSRSISH
NDGKLLIDNHVAKCRNKYYVMSNFKTEIFNNYCTLNPEGSCFTRLLNGEKSFCIKIREKNKNVDVIQDGAIFVNGENTVN
DTHLNGSYLITFNGTTKINNISYTNVDXNILNPFIQIKQTQIPVTLILIIFTFIYLTITIIIKFRKFLIFKPWQIHIEIE
PENNISDNEINNIPDNENTLEENIIVELTQQLHSIYPSVPMNRDDSI
>Gypsy-18_NV#LTR/Gypsy 24-3980 [Nematostella vectensis]
MAQQMAQGVPVPTYTGVGDIESYMERLECYCDLMKTPEESKVALLLCGLTAGQYETLRDLVSPEVPKTVEFKVLKEKLVE
HYGSVRNTRFERTKFRAVKREENESVAAFEVRLRNAIRHCGFTGETLNENLVEQFISGINHSGIERKLLQKGNDLTLAQA
IQLANTFLLFEDSARGGKVDTPPIEQQSGISNVKSEVECYRCGRKGHRSSDKVCKALGKKCNNCGVVGHFAKSKFCKGGE
LKSHAVRGRGRGRARRSGGIQHQITEESADKDSGVTHLFSVDEEIRQLRETPMCQAIVGGKSFPFIIDSGAAANIVSSKL
YEEIKSNVSLRKTSKKLYAFGQEDALKLKGEFETEVSICSRKCVATFYVFDGNASVSNLISHNTAKKLQLLHVNSVSEQE
QQCNTSLGSEMKSKFPECFSGVGKLKGNKVKLHIDDKVEPVAQPVRRLPFGYRDKVADLLKRLQEEDIIEPVEGVASRWV
SPIVVIPKANEEIRMCIDLRKVNQAVLRERYPIPTMQEMLVELNGATVFSKLDLKQGFFQLELEEESRDVTTFITHVGLF
RMKRLGMGICSAPEVFQYTVQKVLVGLPGVLNLADDIMVFGKDQAEHKKRLTSVMKRLSESGLTLNPEKCRFGLSSVTFL
GHVISDKGIAADPGKVESIVNARAPVNVTELRGFLGLVQYVGRYIPDLATLSSPLRELTRKSVTFEWTPRQEDSFQAIKR
VMSASETLAYFDRQAETLVVADASPVGLGAVLIQKQGGTEKVVAYGHRSLSDVESRYSQTEREALALVWACEHFRLYLLG
IQFTLVTDHKPLTHIFNNANSKSTPRLERWSLRLAPYKFRIVYRPGESNIADPMSRLSCRGNVEFPVGDDTREYISMIVQ
EAVPEAMSWQEIKASSDECEVVQVVKEAIRTGRWEKCSTSIKAVRSELSESDGVILRGKRIFIPPSLQDRVLRLAHEGHQ
GIVKCKQRLRSTVWWVGIDKDIEKLCKSCQSCQLVSSYDRPVPIATTEMPTSPWKFCSTDLLGPLPDGRYVIVIIDYFSR
YFEAALLRSTKTGAVIDFLDAIFTRFGYPEALRSDNGPQFTSVEFEAYLKSNGIKWVSTTPLWPQANGLVERTNRTIEKI
LKIATVEKKDLQKEFRKFLVAYRSTPHTSTGCTPFSLMFGREMRNKLPQLDYSAAAIPEVARERDMEYKLKMKDYADKKA
ADSNIQEGDIVVMRNETKGKLQPNFRPEKYKVINLNGPDMIVQSKENGSTVRRNVQFAKKVQVAEPDTEVEVSEPEPETE
HTGPDAVTMATETSAPEVRRSVRVRKPPAKFADYLVNH
>Gypsy-18_DWil_gag#LTR/Gypsy 802-2285 via tfasty with Gypsy6_Dya_gag, 1 frameshift. [Drosophila willistoni]
MTLVQHSPPNTDTPAENVCKICSLVLDNTQTCFCTPCKHIFHKSCLEALLEKEKHCPICESEINVSSIKLVVGKCSPKAK
EKHLSLAPSTSRAWTRNFTKQLSQVPRDRAEQLNEPAISVSEAPASCLDASHSSNQPEPQLPRTMPNQRRARPNRGNNTR
PNREIDYTVIQNMIEQTVSRVVSSLPMNLGQREVPLDTFQTRSLISSPCPTTVQNAKIANVMQKWNLRFDGSTEGLGVEE
FIYRVKALTEETLDSDFIGVCKHIQILFGGKAREWYWRYHKQVPRIVWSEFCSAIRQQYKDYRSDFMSKEMIRARKQKAG
ESFVCFYDEVASLIDKFGIKFEEEELMEILQNNLLPEIRQKLLYQSIASIGHLRRLVQMQENLTQELSPQVKVISNTKAN
GRRQIFEIQEGETEDNKIVPDPDEEYEVAAVQGKFVCWNCREAGHTWQNCLEERTIFCYGCGTANVYKPQCQDCIKRLTE
NRPKGASRQRQMLPQ
>Gypsy-20_DWil_gag#LTR/Gypsy 750-2165 [Drosophila willistoni]
MWRDNQKNSDSSDEELLKVIEGNSEQVKDTYTNNQKNSDSSDEELSKVIEGKSELVKETHKMPTTEEVMKIVQVAVQTAL
DHQAAQMQSTFTQQLNLEMESLRTQIESLKPVAPEVEVYRNAEIIPGIECKEPLDIVRSLPDFDGNQNEYISWRSAASFA
YELFRPYRGSSAHYQAVGIIRNKVKGAASSTLASYNTVKNVDAIIARLDFTYADKTPIRVIQQKLGTLRQGEQSLSQYYD
EVEKTLTLLTNKTIMTHEAASANVLNEQFRSDALHSFVSGLKKSLRAVVLPAKPKDLPTALALAHEAEVSHDYAAFAASF
ARATEEKAQGPFEQKNQNFRNNANQNKSSENSQGAYKKTPHYTRVQEKPNNKGKPPQNPGAQAFSTPEPMEVDSSSKYKQ
PTRYSENKSTKSGFRSKKNQQVHFTSQDSPEEEAYQTKAEASALAASDDLSDSEESCNFLGNTPFYRSSREQ
>Gypsy-23_NVi_gag#LTR/Gypsy 974-2440 [Nasonia vitripennis]
MDEDEQLTYAFGARGEGELRTDRRAPRVAETIKRSEPSRKGTPTVLEWDNYLPRRYSESESESFRSRGSAREVRRPIERV
VKPEYREDSRDRRERTNPSRRGDDLSNQKLQTVKILRSWGISKFAGEEKSEDPEEFLEQIDECRDGSGISDAALLAAIPC
CLTKKASRWYRTARAEIFSWPEFCKKFRNHFMKFYDREDLMDDLQRRTQAEGEKITSYLASFKYIISRFRHPPSEREQVE
LAYRKLHPKYREAIGDKIIETLDDIERYGRIYERKKDLDLRYLPPPAAEKMRVPGAAYTGSRKPKVAAVQEEEEGVAGVE
SAAGGKKGGKGKGKNKAGNKGGAQASPPEVSAESESAPTPSPLSYAAAVQNSAKGGVAHANQANSQQAGNQLPNSNNAPN
RDSNAKAKAVASGGAVGAGGEAKRQYLLNASGANKPNVAEGFTSARINEFAGACYTCQGVGHRASECPEVVCFACRRKGH
VSRQCPNK
>Gypsy-22_NVi_gag#LTR/Gypsy 661-2088 [Nasonia vitripennis]
MAVAAGKTHNRRSLAILEEIQKLQNEHNPDNAEKELEWKNAVVYELATLDKKQSTLEERVEKLETNEDLDSLGEPHIRTS
FLNTSKEHKQFETIERIDALALTLEKIKKESDNNKIDIDNLQQSHDAMKKRLATVESDYDALSDQHTKLQSDFNDIRTLI
ETKASQTELCLRMQKIIEAQARESTRLEKLIKNNNGGSSESTTDITKRVKIATPKFKGLASERPMKFLSELDNYIKLVKP
EDHELKYVISQALEGDAHNWWYLLQAEVDSFETFSTRFRERYWNNQIQRTNGRKVEFGQYSPGPRSRVSYATYMFGLARE
LELNLEEHELVKKIAEHFDRDIRRTVTGHEIKSVNKFLEILADYDNDDTNRNRANAQNNQNAQNKQNNQNHKPTXPPAGN
NESKNKAVSLTSQQATIPVRKRRGRHTIXTLRRQQTTXPTRDQGRKTKVGTKNREIINPLRKXPTTSTSWIVFKT
>Gypsy-25_DAn_gag#LTR/Gypsy 2213-3712  [Drosophila ananassae]
MAVRHSLENPAEGVGEQETICSTCREPTSSNDMLATTPCNHKFHYSCLMPLLQVKSICPVCSSSCSVNRLSLTNNNVTVE
INEAEALGEMLDPSLEPIRANPYNRGKGAIARKGVQTRSMQRKGQSSDSYLESDNHREGLGRTEITDLVQSCIQAQQNNM
LQNISQIINSSIEQALKSKMTSLNIESTEQDQRSPSVPRCFDDYQSQLPPIQRNISHHSETSAGNSRTSSISPEKVANII
QGWRIKFDGARNGMQVEDFLYRIRSLTAQNLGGDYQLLCDHLYLLFAGKANEWFWKFHRSRPNFSWQTFQQEFREKFQEV
DSDMDIWDLINVRRQSEHEPFEEYQFAVETLLGRLKIPISEQSTVRILIRNAKISLRYELMHLGINTIARLREEIRTHEQ
FQKHVKAQSLKPKIPNRSVSELFGTSADELEMEVDEIHKRKMVCWNCQKPGHRFDDCMEVRSVFCYGCGAKDVYKPKCSR
CNPSENRQRDAQNTTYLTHP
>Gypsy-26_DEl_env#LTR/Gypsy 864-2510  [Drosophila elegans]
MDVQALKREEAIVKMELGKARVMVGAKTFDHIINFKDYEGNIAQIENALLDMEXVRFSGEAVQVVKEKLYQVKEKLEALR
PRSRVKRGIFNGLGSMIKIVSGNMDAYDEEKIGNRIKELRNETRFLTKEADEQRTFYQETLSRFTKITKHINKEQEDINL
FIKNYKNNVFRELTQEHNEIHMLQHLNRISYSIDLLTVHLNNIAESILLAKLRIVPKFILAETELERIIQFVESQGLKIV
SNEQVYELINIQTQINETDIIFRVRAPIFEPNVYQLYHVIPIPINGTHLLIIPNYVAINKYKISFFNNQCSKVHETFICE
SEELGVETKGKECLRKILTNKPPICDSVNLEGREMVLAPEDGHIFIFNALDLPVNNTCGEDITVSGALAIKYANCSIEIN
GIKYDGQVMEHKEDHIVLTTTISKQILINNTKQELNLEVLHLEDMRNLKKVVYMGKVQETHFSVIYGMLVLLAITVLAIW
RIRKTKTIFTPNAFSAQCRSGYTTDVAIAPFWGGGVTVPVPSTMPPPKPPRVTLFQVDSDRQLAVRCPT
>Gypsy-25_DR#LTR/Gypsy 64-4574 [Danio rerio]
MDTAYTTVDEVEITEPQINPVIHTVDLSEGNETDYTGEQFTTRRNPTEQLTSLLSSLYISDHDQTADVVSDEVGNQGIHD
EVFQLKEDLLALSDKVQNMEHDFNQAFESTVNRETNFRQALDDRLNSMQENFEDSLKKLEKAVIDCFLRRDEKWESKIKQ
IYSTSTPFPSRRQTRQTNVTHSDLFSAAQSPITQPSFNATYHVSAPSSSGHQTQSDANVLPGSSSFFARPPVRLEFPSFG
ETCETADVFNFIEKCEDYLEVRPLSNIELLGTLSTVLQGPALSWWKAEKGKVKDWESFKRALMDAFLPADYMSEVEEKLR
NMVQQPNQRLRDFAYNYRALCLKWKPDASEEELVNRILNNINPRVAGCLRGTVNTVSQLVKVGALVEKDCMGTKEYWKKV
ESSNERDKNKKSSEAGSRKHLAGVTLTQHHPTSFLLGVTIKVNEQEITAILDTGSTFTLIQESVWKRLRCKRVEASKTLS
SQKFIMADGTIHHSKDHQLMSVEWHGGKFEIGAFIMKDSHLAFPVIIGLDFLKLARVVVDLEQGRYGMRRGKDCEYFPFM
SVLPPCSQEMPVSPSCSVRHAALHLYCAVPPDYQPKVTYPSDTSNICFPEEVRDLITAWPITTSEKLGHTSIYQHKITLT
DHTPVTSRAYRVSPLKKRIIEEEVDRMLENNIIEPSFSPWSSPVVLVPKEDGTYRFCVDYRRLNKKTIFDAYPMPLIQDI
LESLEGATWFTSLDLRSGYWQVEMAEESKELTAFITTKGLFHFKSMPYGLKNSAATFQRLMERVLGELRGKICFVYIDDI
IIYSKTPEEHKKHLHQVFERLTQANLTLNMKKCQFFTRQLKFLGHLITERGIEMDKEKIQAVVDFPTPSDLKSLQRFLGL
AGWYHRYIPHFADITAPLNQLKKKGVRWDWTEECQSSVNALKQSLQHAPILAQPDTTKPFQIHTDASDVGLGAVLTQTCD
NQEKVIAYASRTLSPAEKNYSTSEKECLAVVWAVEKWRHYLEGMPFDVFTDHSALTWAFNCPKTSSRLTRWTLRLQQFDF
RVHHRKGCVNLVPDALSRAGDSSVPNPCLSITSTTASELPISLDEIQKAQQDDKALLQLTSTPSRCVAKDQAITFEKIQG
IWYRKVPLKGEGNKYQLVVPEEFTQNFLHYFHDNPLAGHLGQLKTLLKILEVAWWPSVRKEVWSYVKSCKLCQQYKPSNS
KPSGLLQSNLITEPGHTLGTDLMGPFPMSKKRNAYILVIVDYFTKWTELFPLRDSKTQKIAKILKEEIFTRWGVPKYLVS
DRGPQFTSSILSDVCKSWGCIQKLTTAYHPQSNLTERVNRTLKTMIASYVGQQHQNWDQWLPELRYAINTAQQETTGCTP
AELMVGRQIHGPLERLIHLPPSPEQASYTVLDRQHYLQQEVVQRMRMNQAKQAKYYNLKRKDVQFKVGDLVWLKTHPLSS
AVSKFTSKLAPKWEGPGVITKRKGPINYSVSWGDPPRTDCFNVVNLKRFYGRSSSEMPAGGGI
>Gypsy-22_DBp#LTR/Gypsy 63-4589  [Drosophila bipectinata]
MDVSNASIAQLKRWLSALRLPTTGTKRELILRLDKMSKETRNYLESIRNQDEDGDGNNDEDEYEEDLELESQEDDNDNGD
EDGGNNNDKAGVQENEKVRGEGNDKHGGGTKGKDGDKNKSKVGGDRSGKDGDRRNSKDGGESSGKDGGENNNSDGGRNND
HDGGENNNSDGGEGEDKDGDHARNDRNEAGSSGAKEGATEEVKKGNVAKSELLEFHNPSIDISLGMATQVVSDFSGETCA
RKWITQMKNIATIYGVSGKYIKMLMISKIKGKANVWLHANPERIMLPLEELTAELISMFSDKVSKLEARRQFENRKWSSG
ESFGSYVDDKVMLGQRIDIDAEEMISRIIEGIPNQGLRNQAHIQCFENVAHIKRAFAEVKLPKSYGDKKEAAANKDEKDS
KDTRCYNCNAKGHWAKECRKPRREKGSCYACGEMGHFVAKCLKNKVKSEVKNNYVRYFEIYFKNNTNTRLITECLIDTGS
PISFIKISKVPENVCKMPVLSSYHGINESYLETYGRILCYIKKKFNKVHFHLVVVANKSMSHDVVLGRDFMEARDLNLNL
DTLKMVTVENLENVKDSYDVSDEEQIVSDVDVKQKIRNAVRLQEATKFDINVVEKELMNINIEDESVEYKIGEQVEYKVR
QQFIKIIENFYVNKQRPREPEVKCEIKLRLDDSKPFSSSPRRLAYTEREKLQSILDEYLKEGIIRPSESEYASPIVLVKK
KTGDLRLCVDYRKLNKTMIKDNYPLPLIDDLLDTLVNKTIFSKLDLKHGYFHVFVENESIKYTSFMTPLGQFEFMRMPMG
LKNAPAVFQRFINKIFADMIREGKVVIYMDDIMIASKEIEEHLSVLKEVFERLARNKLELRMDKCEFLQASVQYLGFLVS
SKGIQANDKGIEAIRDFPVPNKVHGVRSFLGLCSYFRRFIKDFSRIAKPLYDLLKKDCEFVFEEKELDCFEMLKKKLIEA
PVLGLYYYKDEVELHTDASAHGFGAVLLQRKEDKKLHPIFYFSKATTKDEAKYHSFELETLAIIYALRRFRIYVQGRRFR
IVTDCNSLTLTLNRIELNPRIARWALELLEYDFELVHKAGKLMQHVDALSRNTNICVVETVSFEDNLVICQAKDEKLKKI
RMRLEKEDDKMFEMRNGVIYRKANDGKLLFYVPEEMEDKILYKYHNELGHLGRDKVMDAIVRTYWFANMKEKVVRHIDNC
LRCVAFSPKSGKGEGLLHSIPKGNVPFEIIHIDHYGPVDKGRSNKHLFVVIDGFTKYVRLYATKTTNTKEVIIALKDYFR
SYSRPTCIVSDRGSCFTSEDFQKFLEEYNVKHVKIATGSPQANGQVERINRILGPMIAKLADSEKGLHWDTVIEDVEFSL
NNTKQRSIAQMPSKMLFGIAQKGKIIDELRQKLEELDNTDNVRNLDEIRKKGTECQTKLQKDNERNYNEKRKASSKYKVG
DYIVVKNFDCTVGVARKLIPKHKGPFVIDKILGNDRYLIKDVEGFQLSRIPYQGVWSSQNIKHWIGKRR
>Gypsy-21_DR#LTR/Gypsy 1765-6426 [Danio rerio]
FKRAAVVLGGTNGVIPSHSFKIESAPVVGQTGAEKCSRRPKNSKFCNHHASSRSKPFILPKGLVGAKCTAEVSIAGQKCS
VLFDTGSQVTTVSQTYYEQNLSHLEIKPLEHLEVEAANGQFVPYLGYVEIDVVFPKEFLGAEITLTTLALVTADTSSNVQ
SPVLIGTNTLDLAYEAQFDSEVAQPSHVLPYGFKVVMNVLRHRFKLKTNSMIGLVRAQGTKPEVVPAGQTLVLEGSINSR
ELSSDKWVLMEAPLQSSLPGGLLCASSLVTLSQRSFQKIPVILKNETEHDILVPAKSVIAELYSLQSVNVKEPATESNSQ
GKELPPYTLDFGDSPIPNEWKERISQKLCAMSDVFALHDLDFGKTDKVTHRIRLHDQTPFKQRARPIHPQDFDAVRKHLQ
ELLDAGVIRESESPFSSPIVVVRKKNGDVRLCVDYRKLNLQTIKDAYALPNLEETFSALTGSRWFSVLDLKSGYYQIEVE
ESDKHKTAFVCPLGFWEFNRMPQGVTNAPSTFQRLMERCMSDVHLKEVVVFLDDLIVFSDTLEEHERRLLRVLHRLREFG
LKLSLEKCRFFQTSVKYLGHIVSSSGVETDPDKVAALKTWPVPKNLKELRSFLGFSGYYRRFIRDYAAIVKPLNDLTSGY
PPHRKSSKVRERRDYHNPKEPFGSRWSANCQKAFEAIIEALTTAPVLGFADPKLPYVLHTDASTVGLGAALYQEQEGQLK
VIAYASRGLSRSEARYPAHKLEFLALKWAVTEKFYDYLYGNQFTVVTDSNPLTYVLTSAKLDSTSYRWLSALSAFSFKLQ
YRAGKQNIDADSLSRLPHGALKNDVASQKEQERIRQFALNHLFDDVQTMSPEVIQAICDKHIVYCKSVDCGVTPMTLVES
LAIHVDAIPGSFDHDENNFGCPVVPTFGENDLKEKQRSDPIIREVIVQLETGETIPPLVRKELPMLSLLMRELSKLELQN
GILYRRRHDGDTITYQLVLPESLRSMVLTCLHDDMGHLGVDRTLDLVRSRFYWPKMLVDIERKIRTCPRCVCRKSLPDHA
APLVNIQVTRPLELVCMDFLSIEPDSRNTKDVLVITDFFTKYAVAVPTCNQKSRTVAKALWENFIVHYGIPEKLHSDQGA
DFESKTIKELCELMGIHKIRTTPYHPRGNPVERFNRTLLNMLGTLKKCDKVHWSSFVKPLVHAYNCTKHDSTGFSPYELM
FGRQPRLPIDLAFDVPLNREEYKTHSQFVHDLKCRLKKTYDLAMKSTAKVGERNKARFDKHVVESVLDIGDRVLVKNVHL
RGKQKLADKWESLVYVVVKRAGDLPVYTVKPEGKEGPLRTLHRDLLLPCDLLQLPEEVLALPSTRKRPPTRKNPCNKVQD
QVDFDSDDDDSSLELMHSDLLIPTNITFTEVYEAGTGPQTEVPSIPIVQDTVGHISTENLPVSADSPIECLPEIENFQID
NAPTLNVLPVDDPDVVESDENLPAEVPVNLGDQQIPVEETVKVSEHETETKKHENDGNVIRKSDRVRQKPRIFTYPELGN
PLVSIVQSLFQSLSTAVTDSIIENNSFTKAADAVVTQPVSFMHRDVHRVNGG
>Gypsy-20_NVi_gag#LTR/Gypsy 1385-3676 [Nasonia vitripennis]
MSDNQKNLLGQKLTRSVVRNNPTLQNQIIIPNNQTPFARSKKIIRSPPANNTTAQGRDEEAVTNTEKLNDTIAKNIEKID
QEINLEQTNKENSTGAIKKEISRLNKAHLTINIPTTPNKQESTEISKKEQKVAAVTPITPLTAIRKAEDWKFDNSLKQDI
SLIDIEGFNEQPSLIGNLNNSQSKFNFNFNLDSILDNTMVVGGLGNKQQQQQQAPQQLRLSLKYVANLIPEFDGKCMSVN
EYVEKLKHAKNMLSETDQANLIPILKMKLKGDVYRAMLNAQINNIQDFIKAVRQIYPSTDKMATLYGKIAESLQNPDETV
LSFANRLQELVLQVKDSKEVEAYTAEEKQXFETKIDAETLLAFVEGLRQEIRLELGATRNLGDAIQKAIEVETRLNRRDL
IFGKANKVFCSLSNQVAISGDTSVAIYSCQICQDYGHEALFCHKVACVYCKNKDHLSDSCRIVKKKIQLICKFCNNHGHS
IDACKMNRIKGNHCQYCQVMGHTVTQCPFIIEYELCWKCKESGHDPNNCKNQGKQSETCEFCNGTTHTIKDCPDVTCKRC
NQRGHVLKYCPILMDRKFLMCAICNKNDHEAEQCKEAKILVAQNRAKACQQDIQCQIGNEIGHLGKYYPKFMAQQQATNN
ANASYKNRNYNNYNNNYRKSNNFNNQNKNTSKPNWKQISCEYCKIRGHPIQECRKLKNLENMAQERKNCSYCKEDGHTVE
NCQEIKALESRANKFCSYCKNTNHMTEECFKLQNQQMNRVGND
>Gypsy-21_DY_gag#LTR/Gypsy 57-1016  [Drosophila yakuba]
MSSWVYMATKPELAEYASEFGLDPLGKSEELRRTLAAFSKRTDHTEATKKKLTLLAEKYKKEKSPTRHPEIVITETNTRM
DDGKETKMEGKMETGTIDRVRNWGIRYQGTTNPLEFLEKMEQWATGYGLRHDQLVQTMPFILEGSAIDWWNTTPTKIDSW
VQLRTELLEYFLPPRHEEQLQTQIAQLRQRENEPVREYAMNLRKLMRFTKLSEAEKLDWVYKNCRTKLKLYTRRNGFTTL
TEFLKLAEEVEEIEQTGAQTEQTGPQALRPEVCMRCGGTGHTARTCGNPPRLFCWACGRNGVRTTECCRAKAGNGGGLGQ
>Gypsy-22_BG#LTR/Gypsy 171-1574 via tfasty with Gypsy-50_BG_gag, 1 stopcodon. Pol region has odd insertion. [Blumeria graminis]
MDHNPWNLEGGVTTQYQQGTPASSNEFRDHDATFVQNYPLLCSVPNNQLFITAMQGGNTDINITGLSNEIMALASSYVLV
EKQLYQYKNDYDTLLEKNQELTDAVQNFQNLKNLITNSSTQLEHQNHLLQQKLQHMKQQVAASSEALKENSLLKQKYHEL
ETRIAATGTGAPLSHLRSAEHPDPEFFSADTPELRKELPIFVRKMNMKFLANGDWYQSEQSKMIYLVSRLRGKAFSTISH
SINRDGTVKFLSSDAILALLEQTFGDVDECNNARRQILTIKQGQKNTSSHISDWFEVAQKRGLSDDALINHLYDSLHPLI
VSQIQNRVMLRQKMPTDLNSYLAEVRHIDAVLxSSNSNYTKNKPAPTNHLSFLPPTNSLPVPTGEDMMDLSAAKTSPTII
WTAADAINHRVPRNKAEKNAKRIYCFENKLCSWCYDPGHRARVCAEARWNKGKRKSPDNKTILEEEKA
>Gypsy-21_NV#LTR/Gypsy 107-4136 via tfasty with Gyps1, 2 frameshifts and 2 stopcodons. [Nematostella vectensis]
MEGISNSNTPRMDWTSKDLPMAWTSFKRHAQFMFGGPLQSKSEEQKCNYLMIWVGEKGRDIFQTWTLEEGDEKKLKTYYD
KYEAYVKPKSNRIFSRYKFHTKTQDANEPFEQFLTDLKLLVKDCGYAEQDEHVRDRIVIGCKSSKLREKLIQERSDLTLE
KAIDIAITMEQSQIQLKTMKEEDPSVFKIQSRSKEQSKKYKGQNKTPAPICGKCGYKHGKDKCPATGKQCIKCSKMNHFA
KMYKSKVTSVKCVDDDTTDESTEEEDDDELLYMGCIDINSVNSINSDWKEELEINGKKATFLLDTGAKCNVMSYNTYKSL
GMKDVIKSTQSQLKCYSGHVIPILGCAQLTCKHKDKSLKIKCYIAKNKVFSVISGQACKDLNLIHRINHVHASKEPTATD
DPSNTESQTDILQEYSDLFNGLGCLPGEHHINIDPNATPVIHPPRRVPITLKEQVKQELDRMEALGVIVKQEEATPWVSS
MVTVVKPNKVRICLDPRDLNNAIRREHYPMKTIEDIISEIPNAKVFSVIDASSGYWQIKLDEESSKLCTFNSPFGRYRYL
RLPFGVKSASEVFQRSISQMLEGIQGAIPIVDDILIWGSTCEEHDERLRLTLDRARQYNLKLNKGKCQVRQKQVSYVGHV
LRKDGLKPDPEKVRAVEEMQPPTNLKELRTFLGFIQYLGKFLPNLSTVSAPLRLLTEKDVEWHWEKAQKKSFDKLKHLVS
TTPVLGYYDQQKPVTMQVDACSQGLGAVLLQEGKPIAYASRALTPTQQRYAQIEKELLVIVYGCHKFHQYIYGCTVTVES
DHKPLERITTRNLHQVPLRLQRMMMSLxRYDLNVHYKPxNQMQLADTLSRSYLKETAETLIEELEVNEVHLTAHLPMSRD
KYEKFQQATADDPVLQELTNVVLDWWPENKVKLPLDLRSYWHIRDEISLIDGLLFKAQKLIVPHALRDDMLQRIHEGHLG
IVKCKQRARDTLFWPGMAMEIENKVSKCYTCSLHQRKQAKEPMIPHEPPTRPWANIGTDHFELHNKHYICTVDYYSKWIK
VEELDHLDSRSTVKVLKDQFSKYGIPDEVISDNGPQYACKEFADFAKDYEFLHTTSSPTYAQSNGQIERTIQTVKNILEK
SDQEDPCKGLLNYRNTPLDGINKSPAQLMMGRRLKTSLPATADLLKPPRQVRNYRETKIIKEKQKDYYDQKCCSELKLLQ
QGDQVRVQLGNEWKPAVVVKKHTTPRSYIIQTELGRKYRRNRRDLILTKAPMSDPNAETARIPNEFYQAKVLAQRPETLQ
RHFEATKESSPVNKEQPHESPNTKTRQDSPVDLTPQEPTNSELFTTRSGRTVKLPKYLKDYVHK
>Gypsy-6_AMi#LTR/Gypsy 106-4043 via tfasty with Gypsy-46_NV, 1 frameshift. [Crocodylidae]
MEHFKPPPALSFTGNLGENWRRWEQKLRLYLAVTKAEEEAEDYKIAVMLHCIGDKALEIYNNMQGVFADPNNKTLTEVLA
AFKNYCEPRKKTLSYERYQFWQLRYNEAAGIDDFVTELRSRAQHCEFGPAEDVMLRDKIVFSITDCKLKERLLENPSLTL
AQAVDICRAKALTSAQARVMSAEASLHTVEQKQSCQSTLQKQSKPPVKFAPQEGHQAAKGKVCKRCGSTHKPRSCPAFGE
TCYKCSGVNHFAKMCKSKGEAPKSAKGVSTLYMGAMSAKQHSQTFDNQNAWYSTVMIAGLPVYFKLDTGAEANTIPVDVA
KALQGKVRKTQAHVTLVAFGGARIKPKGAIIAHCKSGANESDLTFYITDNSDPPILGRVACTTLDLIRRVHGMALTVPAT
KADLLKLYPDVFEGLGQFPGTHHIYVDPAVPPVVHGCRKIPYATLGKLKTALETLEAMGVITKVTKPTPWVNSLVITQKK
DGSLRLCLDPRDLNKAVLRQHFSIPTVEDVQKSLSGKKLFTILDEKDGYWQVKLDKESAELCTFNTPWGRYHFNRLPFGI
KSASEVFQQKNHECFGDIPGIHIIADDMLIAAATKEEHDTILKQVLERARLKGVKFNKDKIQFLVDSVRYMGHIFSKDGV
KPDDDKVEAINRMPPPTDKKGLQRLLGTIQYLAQYIPHESSLTAPLRALLRNDVIWQWGPEHQEALDKLKQTITTAPVLR
YFNPAEQLEIQADASKDGLGACLFQQKQPIAYASRALTQSERNYAQIEKELLAIVFAMTKFHQYVYGTQVRVQSDHKPLE
AIFAKPIGKAPARLQRMLLQLQKYDIQILYTKGKDMLVADTLSRATTLAPPPEPDLFHSEKVVHGLTETEPLSGQLLQQL
QEHTKADRELQALRAQHLNGWPSRQKQVKPELKPYWPLRDQIRIQDDLLMIGPKIIIPRGARTNMLTLLHSPHQGIQRSK
ARARQIMYWPKMNAHIEQWIANCAPCQELQPSTQKEPMISHEIPDLPWLKLAADIFDLRGQSYLIIVDYYSKYPEVLHLP
DKTAGMVVAKMKSVFARHGIPKEIVCDHVPFASHMMKQFATDWGITITHSSPGYPQSNGQAERTVQTIKSMFKKTLQDGS
DLYLALLNLRNTPITGLEYAPAQLLMGRLLRSTLPATTAVLTPRLPSNASHKLRNLQRRQKKHYDRTAAFLPPLREGEKV
RMQTSTGWIPASVMAKRDEPRSYVVKTPSGNVYRRNRRHLRKDYSSVPAEHVDAPQETAAEQTSEVKPDHQEQEFRYISE
NPPVPTETPDDTTQTKSGRVVRLPVKYKDYVMG
>Gypsy-5_NV_gag#LTR/Gypsy 195-1264 [Nematostella vectensis]
SFFKEEFVKLESFLRHCCGLQVEGDEVRFVHGTTNNASVKQQHQQQQILSRPQFSPFYGFSTNKEKGVSYRVWRFEVEST
VRGGLYSTEVISEQIRRSLQGEAKTKLVGLGVDASCEALLETLDQFYSDALTATGDELLAEAYTFKQKEGEEVACFASRL
DNHVRLAYVRNTELLPDESAVERQLRMLFWAGLHPEIKDKARHRKDACKSFSELITAARYGEKELSSTQAPKRVARSNVT
VKAEPQEARESTKKEKTEWIAEICAAFSREVRGVLKETLERGPGADESAPLDSDVGRAPIARGRRAQEPSGDRPTCYNCG
ERGHVAIGCRNPPQFRNQGNRPPQQFGNQGNGQRPL
>Gypsy-6_CR_pol#LTR/Gypsy 3846-5877 via tfasty with Gypsy16_CR_pol, 1 frameshift and 1 stopcodon. [Chlamydomonas reinhardtii]
RRTAGVGGPSTTIASAALGPSTPDTADVWNDAPVMDLLRLGAQPDNLSREERQRVQRRAASYRWTGEQLIRLMPDGNTRV
CPPPEARDAIVQQTHEIGHLGERRTLALCQLGYWWAGQRATVQGVVQRCKLCDMANTGGMVRPVQLQPLPIRGMFYRWGI
DLAGNLHPTSPDGYTYVMVCVEHFTKWIELFPLTTKSASETARGLVELLTRFGSPAEVTTDRGTEFEGPFQALCEANAID
HRRTQPDHPQANGLAERMVQVVKAALRKHCRSTQSNDTWDKALPWLALAYRCSPQASTRYSPYKLLYGVDPIIPPAVRPR
FEEHELAFTGDGSEQAYTEALLQRSEWLRRHAPAAAGNLLIAQHRDTQRYALTRSGGYRARALEFVPGDYVYLRNANPDN
TLEMPVRDQVLRVEHVGDMGVAALVGRDTARLRARVEQLVPCHLPNLDPIQDARLLRTSNDLECEVCHSPQQPSRMLLCD
GCGTGWHLRCLTPPLSRVPPGAWMCPGCVELGKAPPTGPAPQRPSAGPVLFPNADTRRRDAEAATLDGVSVVRAVPGPAG
TPRQLQNGTLRFRGPLSRPFYFMVEWPGGSAEAITLADAKRLQRQTVPSSPASAPAQGGEPTAKRRVQPRRxCTNPAGIP
TEDLAHAGIPTACAALASQQRAPTDICSELAWTRSQQ
>Gypsy-7_CP#LTR/Gypsy 1985-6374 via tfasty with Gypsy-6_CP, 1 frameshift and 2 stopcodons. [Carica papaya]
MKGCKMRRGRTPPEQPPDYMSLQEHIDRLYHMVEELVNQPREGIPGPPPVPAPYNPEPVVMDPDCHRKFLRLHPPTFAGT
KNFIEAEGWLKEIEKAFRVLGVTSEQKVILATYLLVGEADRWWEFRQTTLPVPITWERFLGAFNAEYFPARLRHQKELEF
MQLTQGNLSVVEYARRFTELTRFAPAILTDEGQRARKFQWGLRPEIQDALAVLELKTYDEVLAKAEIVESRLRGSSSGAG
SSRPPVPPRRQIPGFSSQDKRPRMVTEISPRPPSTPGRAPTCRTCGKNHGNQPCHRVTRSCFKCGSQQHLIRNCPLMKEQ
PEAQRRGRVYTLTAADAEANPDVVQGMYPVSKNLAKVLVDPGSTHSFVSHTFAPRLGVTPVYLGHILMISTPSTEVLLSD
VIYKNCIIEIAGRELKIDLVLLDVGDFDVIIGMDWLAAHYATLDCRNKKVVFNIPNEETFTSxLNGVIYHIVWLFKLYNL
LSLTCKGYVVGDKDKKIDFYDVLVVREYPDVFPDELPGLPPDREIEFSIDLQPGTQPISIAPYRLVRAEMEELKKQLTEL
REKGFIRPSVSPWGAPVTFANKKDGTKRMCIDYRQLNRVTIKNKYPLPRIDDLFDQLQGAQIFSKIDLRSGYHQVKIKPE
DISKTAFRTRYGHYEFLVLPFGLTNAPAVFMDMMNRMFEPWLDQFVIVFIDDILIYSKSREEHVEHLRQVLETLRKEKLY
AKWSKCAFWLEQIAFLGHVVSKDGVSVDPAKVEPIMGLEHPTTVKGVRKFLGMAGYYRRFVKGFSKIATPLTRLTKKDVK
FEWTPDCENSFRELKNxLVTAPILTLPSGSGGYAVYTDASGQGLGCVLMQNNRVIAYGSRQLKNHERNYPTHDLELAAIV
HALKIWRHYLYGETFEIYTDHKSLKYLFTQRELNMHQRRWMDLLKDYDCKISYHPGKGNVVADTLSRSTSGMIAKLVASE
CKTLETLQELQWGIHKRGMYIASLRIEPVLIQKIKDAQETDTAIGTLKKETEQGLRSDFRVHDDGLLRFRGRLCVPDDPN
LKRLILEEAHNSRFTIHPGITKMYRSLRPRYWWIGMKKDISEFVSKCLTCQRIKAEHQKPGGLLRPLPIPEWKWEHITMD
FVMGLPRTRLNHDTIWVIVDRLTKSAHFLPIKATDPLDKLARLYIKEVIRLHGIPVSVVSDRDARFTSRFWTSLQQALGT
TLSFSTTFHPQTDGQTERTIQTLEDMLRACALEMGGNWDDHLPLIEFAYNNSYQSSISAAPYEALYGRPCRSPVCWEEIG
DRKLIGPELIEETTSKIVLIKKNLQTAQSRQKSYADNRRRSLEFETGDHVFLKVSPMKGLMRFGKKGKLSPRFIGPFEIL
ERIGSTAYRLALPPELANVHDVFHVSMLRKYHPDPSHIIQYEEIPIEEDMSYQEMPIEILDKQERVLRNKTILMVKVLWR
HHSPAEATWETEDSIRARFPHLL
>Gypsy-7_AMi#LTR/Gypsy 86-4143 via tfasty with Gypsy68_DR, 2 frameshifts. [Crocodylidae]
MEGLKPPGQLDFNTKSLAQTWKQWKQEFSLYTELTMADKEEKMKVKLFYYLVGGKGREVSATLMPGNPDTLEQLIEAFDA
YCDPRKNETVERYQFFTRNQEEEEGIEAYITALKTLASSCNFGDIKDSLIRDRIVCGTRDSALRERLLREVDLTLEKCHQ
IARAAELSKQRIKMISTATCTEQVHRLNLKDSGKQEPDRPTANADNMIQCMYCGKLHERRKDKCPAYGKECKKCGKQNHF
RGQCRTTQIEKKTVHAVMRDQETTDEEEAFSVNLTDSQTHRIHTLQKKAGNNSAIFATMMLEQRPIRFQVDCGATCNVLP
VNLLSSSIRMEKCHQVLLMYNKTTVRPLGKCRLTIINPRNKKQYRLEFIVIDRADTHPLLGSRAAQAMDLITVQHHNILQ
VTEEQERSLGSLPNILLRYGDIFQGTGLFEGKLKLEIDPQVQPVRLPKRRVPLALLEPLKKELTNLQKKGIITPVEKSTD
WISSLVVVRKPSGKLRICIDPKPLNRALKRSHYPLPTIEDVLPDLSRAKVFTVCDVKNGFWHVELDESSSSHLTTFSTPF
GRYRWLRMPMGISPAPEVFQRKLNQELEGLPGIKIVADDILVIGEGDDKEEAIRDHDAKLQQLLNRCRERNIKLNADKIQ
LRRTEVPYIGHLLTSEGLRPDPEKVRAIMEMPRPQDVKGVQRLIGMVNYLSKFCAHLSNACEPLRLLTHNDAAWEWAQTQ
EEAFKRIKKLISEAPTLKYYNTAEQLVLQCDASEGGLGAVLMQNQQPVAFASRAMTETERRYAQIEKELLAVLFGLERFH
QFTFGQRVDVQSDHKPLEIIMKKPLLSAPKRLQRMLLRLQAYDVSIKYYPGKSLQVADALSRAYLPECSTDGSVEQEIES
INMVQDLPISKSSLKAIQQSTEQDGVLQAVKRTILEGWPQHKAQVPPEVAAYYQWRDELCTQDGILFKGDRVVIPAALRR
DIMNRLHASHMGIESCLRRARECIYWPGMNAHLRTYMEQCEVCKEYSDKQQKETLNPHDIPSRPWEKVGTDLFNVNDRNY
MVTVDYYSNFWEVDYLEDTQAGTVIRKLKAHFARHGIPDTVSDNGPQYTSREFKQFCTRWEFQHKTSSPGYPQSNGKAES
AVKTAKRLLLKANKTAGDPYLALLDHRNTPSQGMDSSPAQRLMGRRTKTLLPMRDCLLQPQGGRGDSTWKQLKKQQSQQV
SQYNKGARDLRPLCRGEKVWVQPVSPHVKEWQKATVEGAVGDRSYEVVTDSGQRLRRNRKQLRSAGRAEIQVSKRFQDQD
QDNFDNWSVISEPQIGEKDAMDSTKERDTQAESSPQNKDTDRTEAGVAPRKINQTRSGRLVQRPAYLDDYEP
>Gypsy-5_Crp#LTR/Gypsy 47-4222[Crocodylidae]
MERQPNPMGSLEPLQQTMHLVGQLLQQQQQQAARQIALEEKWIQQQTWAQRHQVELRVPKMTPQDDPEAFLESFERAALA
SGLERSRWADHLGVLLIGRAQAAYRAMARGEATDYDKVKKEILCRLNINPENYRQAFRMKKKKEEKSPRILLQQLADLLE
KWLKPQEVSKVELCDQILLEQFLIDLEENTQRWVRCHRPKSSAEALRLAEDFDSAQMDNYREKAPKSGTPQVGRENEQKE
TREGKRPTTVCFRCGRIGHIARECASHPRLGPRPREIPFETRIQRSERSDNGQVEMMDCSIGETHWEASKEKPTVWTRVG
GKKIKAIVDTGCAQTLIRTSIAPRGWAPSASTVKMICMHGQLSVYPRRKYRVEILDTTREMPVGLANDLPYPMVLGRDWE
EIYEVLDTVRRQEVKVEGLAGENSEDYTEPDTLDLESLASSSCFREAQQGEDLFRSIRQMELAKQDDQVICPERCHTFPR
YELRKGLLYRIKAGHIEGTEVPQLLIPRDYREPLLKLAHTNPLGGHMGRAKTETRLTKWCFWPRLYEQVEDYCRACPSCQ
RVSLQKPPRAPLQSMPVIGEPFSRIALDVVGPLPKSVTGYQFVLVLIDYATRFPDAVPLRTVTGPRIAEELLKWVSRFGI
PREIITDQGTNFMSQVMRNLCQVLKIKHLRTTVYHPQTNGLVERLNGTLKNMMRRCTQEEPRKWDLVIPPLLFAVREATQ
SSLGFSPFELVYGHRPRSLMDVVREGWEEGGTPGVRPSEYVNELRERLRKAENLAQENLRQAQEKQKTRYDQNTSERDLQ
PGQKVLVLLPDTTSKFLTCWQGPFKISRRVGPVDYEVLRPGQKKEKQIFHVNLLKLWKEREGLVASSMRGQAENEGTMNR
EHQNRPTSQEVCLGTQLTAQQRDQLKLLIREFGDVFNENPGCATGISHNIVTPEGRVIRERWRRIPYHRYEVVKAEIDRM
LEQGIITESRSPWRSPLVIVPKQDGSLRLCVDFRKLNAISKFDAFPMPQISELLERVGQAKYISTLDLTKGYWQIPVRRE
DQAKTAFGTPWGLYEFKRMPFGLHGAAATFQRLIDWVLAPHQQYAAAYIDDIIIYTDEWEQHLKALRAVLQELRQTGLTA
NPGKCALGKAETKYLGFLVGQGRMRPLVDKVETIRDYSPPQTRKQMRAFLGLASYYRRFIPHFAEITTPLTDLLKGRGNG
PIKWEEKHLEAFRRTQQALCNDAVLHTPDFTRPFILQTDASSYAVGAVLTQEVDGIERPIAYASRKLNPPEQRYATIERE
CLAIKWGVEYFRYYLLGRKFTLVTDHAPLKWLKTTQTDNTRITRWALALQPFHFDIEYRPGHANVVADFLSRCHPGTQSL
EASNTQEDPNSLRIEDQDKQQKAPSGVLRGKV
>Gypsy-4_Gav#LTR/Gypsy 57-4207 [Crocodylidae]
MEHPPGMTGVDPTQQTLSLIVQLLQQHQQQSLRQMSLQEHWLQQPTRVPQGTGDFNVPKMTREDDVEAFLEAFERAAIAA
GLEKARWAGQVGVLLVGPAQAAYRALSRSEAADYDRVKAEILQRLAITPERHRRAFRGRKSKEEKNPRVLWQSLTDSLNK
WLRPTVASKEEICDQILLEQFLGDLEDNTQQWVRCHGPTTTRQALQLAEQFDAAQGASRPEKGMRGREVPLRGVKEIRGD
KRMSGTGPLCFLCGGRGHIARVCPQNTRGRDGRSSHHWEMAPKEKEVLDGEPMECGVGAGTPPVVQPLPEVRVWVEGRPL
TAIVDTGCAQSLVRPSLVEWRRAPRCTGIHLVCLHKRKAYFERRLLEVRVQGRCRQIPIGLKEDILYPMILGRDWPEIFG
IIADFDRSGAPSGGLAGEVGPTVEEELEDLTSSNLFREAQEVDVELRPFREAEEGYQEPQVSPPADQKTGPRVELRRGLL
YRVKPGRIGGEELAQLLIPRPYRDPLLRLAHGNPLGGHLGKHKTEARLTRWCFWPHLYEDVENFCKSCERCQRVSANKPP
RAPLQPMPMVREPFARIALDIMGPLPRSTAGYQFVLVLIDYATRFPEAIPLRTVTGTRVAEELMKWVARFGIPKEIMTDQ
GTNFMSTVLAAVCQVLQIRHLKTTVYHPQANGLVERFNGTLKGMLRRCTQDDPRRWDLLVPPLLFAVRDAPQASMGYSPF
ELVFGHRPRSLLDIVREGWETGLGPEERADKHVQGLRERLQRAKEMAQQNLGEAQQRQKDNYDRTAKERELRVGQKVLVM
LPDSNSKFLTQWQGPFTIVRKVGPVDYEVLRNGVRKKKQIYHVNLLKEWQEPQGLLLYPESEDEEPGVXESKAFPGPSTS
PGVPTDRRLGARQEQQIRALIQEFKDVFTDRPGRARGVEHQIITKGDQIARERWRRIPFHRLQPIKAEINQMLAQGIITP
SRSPWRSPLVAVTKPDGSLRLCVDFRKLNALTRFDAFPMPQVGELVERIGQAKFISTLDLSKGYWQIPLRKXDQPKTAFG
TPWGLFEFKRMPFGLNGAAATFQRLIDWLLTPHQEYAAAYIDDIVVYTETWEQHVKALRAVLQELRKKGLTANPKKCALG
KQETQYLGFLVGQGRVKPLQDKVAAIKNYEAPSTKRQMRGFLGLASYYRRFIPRFAEIANPLVETTKGRKAFKVEWNAER
RKAFEDLKRALCQEAVLHTPNFNVPFTLQTDASAHALGAVLAQEVDGIERPVAFASRKLNEHEKRYSTIERECLAIRWGI
DYFRYYLLGREFRLLTDHAPLKWLNSAKTDNARIMRWALALQPFQFQVGYRPGKTNTVADFLSRQGEPQPAPEGNPQVPE
QGRRQGRNGDSSVIEAPSGVLRGG
>Gypsy-4_Deu_gag#LTR/Gypsy 579-1520  [Drosophila eugracilis]
MTSPQLLSEIHLNQLLSQLKELHYFDGTPGRLAEFINQVEYLLQLYPTQDARQAHVIFGAIRRLVVDSAQETVAQAGANN
WPSMKEALSISFKDHRPYETLIQHLGNTEYRGSTSKFIETLENRCRNIYDKLELETDPIDKINYRKMLEKTICNTINKKL
PDRIYMTLARKDITTIPKLKQATMELGLYDLNPEEKFSQNKKNYKNKGYKNQGNNQRYYNQKSSNSFYPSNSQNSQNQSR
SSPIDQTWNYHTLKNDLNQGRQQNPLNFQPSTSHKSKTAPNAPVKRQRQSQSEQSRMDVNFHQTASETEPSIHM
>Gypsy-4_NV#LTR/Gypsy 128-4135 via tfasty with SUTRVLEP_pol, 3 frameshifts and 4 stopcodons. [Nematostella vectensis]
IQGIAPPSGLNLRGADKAANWKVYKQQWHIYVIVTQLEKQSEEYRVALFLYSIGSEAVKTYNSFDMTEEDRKKLTMIIKE
FDRYAIGETNETYERFQFNSRDQKEGENIDRYVADLRTLAQTCGFCRCLHDSLIRDRIVLRIRDTNTRKRLLRQTKLTLA
KSIEIVRSEEVxASQMKSLGSDKAEEVHSVDSGTRHKTKEASRQKYDRNAKTRQQTNQKSCRFCGYKHRQGREHCKAWNQ
TCGACGKKNHFKSQCMSTEKAHQIVDETGSSSDESEFAFSVTEKQPLTETVNAIKPREIHANMLIGDQKVKFHVDSPCGA
AVNILQSKYVKKSDIKPTKKVLLQMWNKSELKPQGVCRVNVTNPKTRESFDVEFMIVKENPTPLLGVHTIQKMKLIKVQE
ENFEKVCVTKGKVREERTTGSTTAKQIIEQYNDVFSGDLGTLEGKQHLDVDPTVPPNIAPSRRVPFALKPQLEAELQRLT
DIGVIVPVDEPTDWVNNLVVATKESGDLRLCLDPKPLNKALKRERYPLPVIDDVLPNLSKAKIFTKVDALNGYWHVQLDD
ESIKLTTFDTPFGRFAWKRLPFEISVSSEMFQKKLTQALDRLDGVLTVHDDIAVGETEEEAQDDHDKNLKRFLQRCRERG
VKLNKKLQLGCEEIPYLGHVITRDGLKPDPDxVKAVQEMPQPTDVKGVRRFCGFVNYLAKFLPNLASVIGPIQQLTRHDV
EWQWRPEHDQAFGKIKEFTSKAPVLKYYEPDVELTVQCDASEKGLGGALTQRGxPFAFASRALTETEQRYAQIEKEMLAV
VYSLQKFDQYVYGREVTVESDHKPLAAIVTKPLRSAPKRLQGMLLKMQRYCVTIVYKPGTEMYLADTLSRAFLQSSKNAQ
REFERINAVKLLPITDERLAELKKHTTDDEVLQQLRVIQIGWPEERKELPACLIPYFSSRDDLAIYDGLVFKGERLIVPK
AMRASMKERLHSSHIGVNGCLRRARECLFWPGMTSEIKEFISQCESCCMYDNKQQRETLMSHETTERPxEKVGIDPFTID
GKDYLIVVDYFPGFWEIDPLTSDCKAPTVVKKLKAHFARHGIPDVVISDNGPQFVSEEFAAFTKIWGFEHRTGSPGHQQS
NGKAEASVEQAKKLIRKAKSSREDIYLGLLAVRNTPTESMGSSPAQRLLGRRCKTRLPTTRELLRPQTVSTELIKKQTKE
QQQRQAKYYDRGARDLEPLDEGGVVRMRPFRLGKKEWDRATVRKRLDERSYEIKTDDGTTLRRNRADIRMQQTPSPEDQS
LVPAATVAGPDPPSVSSPAATSATEKLPPSDKRPETPTRPKRITREPVYLKDYVRR
>Gypsy-5_CR_gag#LTR/Gypsy 131-1243 [Chlamydomonas reinhardtii]
MPHAADCTDRWRALTILCGGSRPLAESSVSQRCRGMVVAAAWDAFRWLSQRMADGGQPGRAQRRCGGSISTVPGAVQLGD
AEAAGGQADAAPTALTQGAAAPADSATAAASGVTPVIVAQAALAATSGAAQATAGATGAASCAAPGLMLPSRSNVVERAR
LAVNAAFAIDGLQDKEDEGCVPTPGPGSMGIAGSDSGVSESTYEEYEGYEKSMVSTVSQVGESEVMRQLRTSAEMRGAWG
VDRADRRLRAGSLVARPLAVEGMPVTAPSAASRGHSSAIGALRLQQRFNRKRRRHKQLSERAADPLRGCGVQRLPQRGDS
NPATCAGLPPTAGLPQAGGSRRHATPRRVTGKRSWGTCRAHPPAYRPAQR
>Gypsy-5_AA#LTR/Gypsy 664-4894 via tfasty with Gypsy65_AG, 1 frameshift and 3 stopcodons. [Aedes aegypti]
MEEQLFKLPPFECDSVPITELRQKWFDYKKQFEYIAAVMSKKKKRKLKSIFLAVSGRQLQRVYESLPEVNQECEDDEDEF
DSMIRRLDHYFAPKQHDTFERYSFWTQKPDAGETLDKFLLRAKVLANKCRFGSSEKESRDAAVIDKIVMLAPPELRRKIL
EKPKINLDDLTTLVNTHLSVQHQVRELGQRTSGAGNLLEASRGNTFVNKITTESENRSRWAKSHPTADCSRCGLRLHKPG
EKCPAKDVQCHHCNRVGHFAKKCYFGSNKGTWKRKPSAENPNPRGHKTQKVNAINNDETSTTRDMKPEAQVQDSFIYAIS
DNHDEMVWCKVGNILVEMMIDSGSKYNIIDQQTWVYLQSRNAAVDNVKPSTKRLSAYAQKDSLDIICTFDANIAIVEGND
LNFAAAFYVIKDGKQNLLGRDTAKRLGVLLIGLPSVNNSEFIQHVSENTVDKFPVIKGSYxYVINKDNILIIPVPGVKIR
IDIDETVTPVAQHVRRVPIALRRQVEDQINRLLRMGIIERVNGPSPWVSPVVIVIKDNGDVRLCIDMRRANTAIRREYHM
IPTLDDLLARYCIRQLNCSNxIIxKTSVIRLNGCKWFSRLDIKDAYHQVELHESSRHITTFITHLGMFRYTRLMFGICSA
SEHFQRIIEQILSNCPNSFNYQDDIFVHGKTEAEHDAALESVLRTLEAHNVVLNTKKCKFKVTETEFLGHDISQQGVRPT
EDKITAVQQFRSPTSAEEVRSFLGLVCYVGRFIPDLATKTFDLRQLTVSGQKFDWTTKHEIAFNNLKRAVCSAPTLGFFD
NNRRTRVIADASPVGLGAVLIQFEDEYDDKPIVISYASKSLSSTERRYCQTEKEALAIVWCVEKFKLYLLGRVFELETDH
RPLTAIFKPTSQPPGRIERWVLRLQPFKFRIVYRPGKQNIADSLSRLSLTTINEDVDKCDDQLYISAITDSVAVDVSEIK
NAIITDPELLLVKDALLTSDWTDGAIRDGAKKYIPFQNDLALLEGFVIRGCRIVIPQSLRARMLQLAHEGHPGETLMISR
LRDRVWWPGMDEDARKTVRNCEGCRLVSRPSAPEPMRRREMPKEPWVDVAMDFLGPLPSSEYLLVIVDYYSRYKEVCTMK
KITSEETIKRIEPIFVRLGYPRTITLDNGRQFISTEFEEYCFSRNITLNHTAPYWPQANGEVERQNSSLLKRLKISHSTN
RDWKNDLLEYLMMYNTTAHSVTGKAPSVLLQNRLIRSKIPSISDIETAPPVNSEVHDRDRILKHRGKEREDVRRHAKPSD
IQKGDRVLLQNLISTGKLTTTFGKTQYEVMERKGNRVKILDPVSGSVLERNIAHLKKIYNPQAISNEETSTSVMGDTINN
PMNDQDPPPSSTVDDTNDNPMYNQDQAPPSRPPRIMCRPSWQRDYFVNQL
>Gypsy-7_HM#LTR/Gypsy 75-4163 via tfasty with Gypsy68_DR, 2 frameshifts and 1 stopcodon  [Hydra magnipapillata]
MEHFLPKPNEMDFNESNIAVTWKKWKQTMQLYLKAAMTNKSEEEKYATFLFVIGEKGREIFNTWTWNKTENDDGEIDDIT
VKELFERFEEYCLPKRNLVLERRKFFLRKQDVNESFDFFVTDLKNLAQTCEFENIQDGLILYKIIDGIKSNKVQNNLLRK
GADLTLTKAIDICRAEEVANAEMKQITYEKDIDVVKKFIKPRQANASIGQIPKWRKFSNNENESKGKDRVEPNKQNWKQI
NNGSNKKQQQRQCKKCNRKHEPRNCPAFGQTCRKCNKINHWATCCNSKNIHENCAVEYHVESVSSGEMNGKNEALIIFKI
NNKLVRGKIDTGAEVDVMPKRVYDQLTSRDNLTYTNVKLRGYGGNHIPVLGTSNMMCYYKSRKKLVKFYVVETTSKLVLS
LQTSQDLKAIKLLDEVKTVDTNEAKSQQKEISTLNKVKRIEGKQGKELKEEILKMYPKLFNGLGVIGPEHHIVLKNDSNP
VIHPPRKIPVTLREKIKTELDEMEKTGVITRVDEPTEWVNSLVVVEKPNGQLRLCLDPRDLNKAIKREHYQLPTFEEIST
RLYGANNFTKLDANKGYWQIPLDKDSSMLTTMNTPFGRFRFTRLPYGIHSAQEVFHKRISQCFDDLHFVETDIDDILIWG
TKDVSHDENLIKCLDRAEKMGMTLNIEKCRFRTQELIYLGHKLSINGVQPDESKIKAINEMPKPEDKKGVQRFLGMVNYV
GKFLPNLSETTEPFRNLIKKGTHMQWGEAQDRSFRKIKKLLCSEQCLAFYDIQKPVTIQVDACKTGVGAVLLQNEKPIAF
ASRSMTPAQLNYAIIEKELLAVLFGCERFHQYTIYGKKVTVNSDHKPLENIMKKSLANTPPRLQRMLLRLQKYDIDLIYK
AGKEMILADTLSRAHTNETEEEIPEDEMIAQVHMVYANCSSEENLKEIKTNTLKDITLNVVANYITNGWPQDKRKVEDSV
KPYWSFKEELTLIEGIIFKGQRILIPTSMRKATIQKLHLAHMGIEKTKMRARETVFWPGINKTNxRFIKSCETCLEYTKK
QTKELMISSEIPNHPFQIVGTDLFHWNNQDFIIVVDYYSRYWEIERLHNIQSQTVIKKLKMIFSRLGIPQIVRSDNGTQF
TSSEFQKFSKEWEFKHITSSPQYQQSNGMAERHVQIAKNLLNKAKRSNQDLYIALLEVKNTPVDGLASPAQLISGRRLRS
TLPTSLSLLQVNPIDVNKFKKNREKVQNLQKKYYDKNAKTLENVSDGDCVRIHDGNKWQPGKIVESKQQRSFNVKTLNGN
IVRRNRRHLLKTKEEVDWDVNLSDNESDMNESKDIFIGKRKLSNNTNIDTNTNQNESLDHDIVTRSGRISRKPKHYIDYE
MHF
>Gypsy-14_BG#LTR/Gypsy 46-4869 [Blumeria graminis]
MSNSFSPPKEYTDATEAEVTMLPPKLWSIAYLNAPGVLTLAVKIDSLRVAEIYATASSFSLNSTVVTPPPSQTPTPIHRP
SAPSITPFDGESANLRSFCSQLQNQFIDQAECFPNEGSKVRYAYRCLGPAALSKMRTAFRCYENPTIPSEINSIDQFYDA
LRQRCQDPGLTERASRTVETLYQQDMNFHDFISVFEDNLADSTYSDYDKSQWKAMLERRLSKELRTLLNSASDAPTEYHD
FVNYLRMKDANIQVINAPVQAFYRPRQFATPAPAPLRTPLMPAAFESTISQGGSRMDLDSVSQQRQPGGRLTQQAKAARR
LLGRCIRCNRSGHATLNCPLPARTVACTEPQLNRPGTVKRLTPTTSRPLESYSVVRLGCSEISSSRHMYINARTKNENLV
ALVDTGASGFAFVSSQTAQNLKLTLQTLKSPIAILGFEGKLSSKVSNFVELPLSFGNHQETVTAYVVPNCKHDIVLGLPW
LEKHCPYVDWKNHSITFGEPCLESCCLFETTIPYHNTADQTLKHVNKPGPTIERPLHASNSQTQPRQISADAFTLASQQP
GSSTFAFSLRDLDLMLEDSTQRLPSLRIGNASMIVPKDADPKDFLPLQYHEYLDVFDRKQANSLPPHRPWDHAIDLHPGK
QPPVSRPYSMSQPELKALRDYLDKELAKGFIRISRSPAAAPVLFVKKQNGDLRFCIDYRGLNAITVRNRHSLPLISETLS
QLSRAKYYTKLDVISAFNKLRIKDGDEWKAAFTCRYGLFEPLVLPFGLCNGPASFQAYINHALRGLLDQFCTAYMDDILI
YSDNLADHRRHVKTILNRLRENGLQVDISKCSFEATEVTYLGLIVSTKGICMDPKKVACVQEWPTPRSVRDIQCFLGFAN
FYRRFIPEFSRLAAPLTNLTKKDVQFKWDDQCDSAFFRIKQAFKDETMLAHFDPRRQTVMETDASDFVTAAVLSQYDDTG
MLRPVAFMSKKMLPAECNYEIFDKELLAIVNAFETWTAELGSVEASTLVLTDHKNLEYFTTTKKLNRRQVRWNELLADFD
FKIVFRPGKLGGKPDALTRIHADRPVDSNDIRNIHQHQTLLKPSQIVRRIETSPLPTPESTNTVEPTPALAILTENWEQH
CSEDNYCQQIRSALNDSSVMRSDIQLASCALTSHSFSLNEREYVPQALREILLKQLHESPLHGHRGAAALYGMLSRQYWW
PKCHQDSFKYARGCQDCQRNNPATQKPHGFLQPLPAPEASFRHLTLDFVGPLPMCQIRGFTYRFIMQVVDRLTKRVWIMP
IEGPSAHETAEAFLNNVIRFAGLPDSLTSDQGRAFIDKTWKEICSRLEITHKLSTSYHPQTDGQTERANKTLEVYLRHYV
NYYQDNWAKHLPLAEFCCNNNVNASTGLTPFYASFGHHPRLDFRPESEFPKSRGSPEFIARMKSLVQHCNEKITLAQAFQ
STYANEKRLPAPRYKVGDLVYLSLKNLALTRPSKKLDHIRAGPWKILAMKTPLVAKLDLPFQFKIDNNFHVSLLRPSSIG
FPSQQNVIPPPLEISDSGHEVHEVEAILDSRIHRKKLQYLVRWTGDNDTTWEPHEHLDGCPDLLQDFHKSYPNAPRSQEL
ATQNEGGG
>Gypsy-12_DWil#LTR/Gypsy 14-6016  [Drosophila willistoni]
MTTRNDKYFGTRQATRSTSRMAASTPTAAGAPTALTPAAVPAATGAAAAVPRAAVPTADILAPAGPAAAGPTADILAPAG
PAAAGPTAATLAPAGHAAAVLAQVGPTADMLAPAGPTAAIRAPAGLTDATFAPAGPTADIFAPAGPTADMLAPAGPTAAI
RAPAGLTDATFAPAGPTTDMLTPAGPTAAASAPAGPAPAGPTATAHVPAGPTATTHAPAGPAAAASAPAGPAAAASAPAG
PAAAASAPAGPAAAASAPAGPSAAAYAPAGPTTAASAPAGLTAVTLAPAGPTAVILAPAAHAAAVPAAYKPPRQTAAAAA
SAPAATAVPAATVVPTTAAIAVPTTAAIAVPAAAAAASITVPAAAATSTVPADAVPADYMSAMRVAALLAAPVTGLDAEP
WEEMPALVPLVPPVPTSAAAITPATSASRSLDEQLATLQKQHELLQLQHQILKLQQGIDEFQAPRQQVSDVSVIESMVAR
FSADNAYDVKKWLNDLEDAFGILQLNDRLRLIACRRMLEGTAAVLLRTVSVHSYEELKAILLREFGRSCSVEEVYHALRG
RRIKAGEGCLRFAIEMQEIAMNAPIPENELVDLIIDGLRDNSTRVGMLYSARTVAELKPLLERYERLRMQAAASRQSNSV
KAQSTTTAVAPGNKSSGTATSETRCFNCSGWGHYKSQCPKPIRPPNSCFKCGIVGHIYKNCPSRIGNATNITAAAADEAG
DRLDHLQLVSVAFVCDEVQDRKFIDMFSLLDSGSPKSFIRESEVPSNCRLSPRTLNCRGLGNSQLLSLGQVQCRVRLRNT
QIIHTFEVLTNQATELPMIIGRDLLYKINIRLCKLKELKYEKESLILMNKQTECINPKLTAVLKSFDIFMEKRVILPCDR
NEIVPAELLSDSPLPKTSAVPSETLNDALMAINSIELPAVSELDFDIECDRNEIVTAELLSDSPLPKTSAVPSGTLNDAL
MAINSIELPAVKELDFDIEPALREEQTAALKSIISASYVQVDPDLIKPMNYEMKIELTSQTPIFCRPRRLSHHERIEVRE
ICDDLLKAGIIRHSSSPYAAAIVPVRKKDNTLRKCVDYRPLNKITVRDHFPIPLLDDCIEHLGGKSFFTILDLKNGFHHV
KMHPDSIKYTAFVTPDGQFEYVRMPFGLCNGPSVFARFVYFVLKEFINRGQLVIYMDDILVASHDFETHLEILKEILYVL
RVNGLCLKLTKCRFAYRELEYLGYLANSAGITPKPAHIQAIRDLPIPRDSKELERCLGLFSYFRRFVSGFAKIACPLSRL
LRKDTPYVFSDECLEAFRTLKLKLIESPVLSIYNPKSETELHCDASSIGFGAVLLQKQTDGKLHPVSYFSKMASAAESKL
HSYELETLAIVYSLKRFETYLKFIPFKIVTDCNSLALTLRNGGHSAKIARWALLLENYNYTIVHRSGLGMPHADALSRIE
TAAYVDDINLDFQLQLTQNRDPEIVKLRDELEKYEIANFELRDGVVYRLSSTSIPQLYVPSEMVNHVIRVVHEKLGHMAT
EKCCAQIKKHYWFPCMKSYVNNYIKNCLKCIYYSASASDHRVTLHSIPKVPLPFDTVHIDHLGPLPSIRSKKKYLLVVID
AFTKFVKLYPAATTNSREVCQTLESQYFANYSRPRRIISDRGTCFTSSEFEEFLNANNIIHVLNATAFLRYNYIKNCLKC
IYYSASASDHRVTLHSIPKVPLPFDTVHIDHLGPLPSIRSKKKYLLVVIDAFTKFVKLYPAATTNSREVCQTLESQYFAN
YSRPRRIISDRGTCFTSSEFEEFLKANNIIHVLNATASPRANGQVERVNRVLGPMLGKLTEPVDHADWVQQLPNIEFALN
NSVHSTTKFAASVLLFGVEQRGVVVDELTERLGERTEEVDASEVDVRRLAFRNIVKSQEYNSEYYSKHHLPAVSFEEGDF
VVIKNVDTSAGTNKKLIRRYRGPYVVHKKLPNDRYVIRDVEGSQITQLPYDGVLEASKLKLWVAPDQDCTSDSQTKATPA
T
>Gypsy-14_DAn_gag#LTR/Gypsy 149-1528  [Drosophila ananassae]
MNFPGPYREIKKEVVSDSEEEEIRGFRPGQAQIVEKEKIMNANELQSIIQGALAQQEARLRAEFEAQINSVNVQLQNMRV
ETPQVEAYQRVSVQPGAPPCDIPLHIIKSVPDFNGEQDGYVAWRQSATDAYELFKPYQGSCAHYQAVTIIRNKIRGPARA
LLVSHNTVLNFDAILARLDCSYADKTSLRLLRQQLEAVRQSDQSLMQYYDEVERKLTLVTNKIVMSHDIERATLLNNEVR
ADALHVFISGLKKNLRAVVFPAQPKDLPSALALAREAEASIERSQFAATYARAMEQKTQNSDFRRTQFRTPDKQGNEKNP
HYFKRPDKNQQNGSGRKPEDWADRGNPRQAAEPMDWNPSSSKSKQQHFKQNQYVSQPQNMQAKNSKRPNSSDRITDQRRQ
RLNNIEQTASANDQEYESAAVAAMSAIEDDSDSIDSHDLLNFLESGPGCRSSNDSWLGGL
>Gypsy-16_HM#LTR/Gypsy 34-3924   [Hydra magnipapillata]
MEQLRPLEAMNLNGNVSENWRKWKQRWNLYKIASGVNDKNEDIQCAIFLHMIGEDALRVYDTFVFTIEENDKLTPLVQKF
ECYFSPKKNITYERYLFNTCMQDSRLFTDFLIDLRNKAKTCEFGTLEESLIRDRVVCGIDSKAARERLLRDTELTLEKTI
SFMRAYETSKTQLKALENTIQADSINKHGNRPNFNSLKIDRPSQKSCYYCGSQHTTSFCPAYGLKCTACGKLNHFAKVCR
SKTNRFNTNRVDQVDQKEVNLNVAELYIHHVAASMECPDDLTTNITVNNKNITFKLDTGAQCNVIPYNVYNSIPGRPPLK
KTITQLKSYGGNNIPVLGICNLTIKKNNISQVCQFFVVSLSDVKPLLGLSSCKSLEILNINDVEIDKTNILKHYSDVFTG
LGLVKGNYHIALAKDAIPVIHAPRKVPMTVLPKLKSTLDRLVKATVISKISKPTPWVHSMVIVEKKDGSLRLCIDPKELN
KSVLRQYKTTPSTEEISSKLCGNKVFTVIDMADCYWHIKLDEPSSELCTFNTPYGRYKFNRMPFGISCASDAAQEMIELN
FGDIPNVLAIHDDLIIAAKTDTEHDKIFQQILQRARERNIKFNLKKIQFRVSEVKYLGNIISHEGIRVDPEKTKAISAYP
LPACQADLQRLLGMVNYLRQFIPNMSEITAPLRQLLKKDIHWSWNHEHTSAMEKIKQVLSSSPVLSFFDTSKDVQIQVDA
SSHGLGACIMQEGHPISYTSRSLTIAEQRYAQIEKELLAIVFACERFNQYTYGRQVSIESDHEPLEYILHKPLSEAPPRI
QRLLIRLQKYQVIVKYVPGKDLHIADSLSRAHLNIFDEDDSLNEDCSVMVHTLVQNLPISTDRLKQLQHDTKLDPVLSQI
TNYITYGWPRNRQMLCGEEKKYWTIRNNLHIAEGIILKENKIVIPTDMRPLILTQLHLSHLGTEKTKARARNVVYWPGLT
SDIDKLILNCHKCLKYRNNNKKEKIIQHDIPDLPWSKVGSDIYELHGKIYVIVIDYFSKFIENSVIPDKTAFSVIKFMKT
IFTRHGIPSSLIADNNPYNSAEFLNFSKEYGFNFTPSSPNYPQSNGLSEMGVKIMKKILKKCDNPELGLLEYLNMPLTGM
DYSPSQLLMNRRTRTTLPVHHDLLIPAVPVNAYSQITKSRNRQKQYYDRNASELPNLVANDTARMRKDGKWKKVTVKEKL
TLPRSYNVVDKYGRVYRRNRKHLIKTNEQPLVYQHEQLDLPYDLPAVITSPTSNEETANNEIEATCIPETQSTEPQPDLR
RSLRTKNRPAYLRDFI
>Gypsy-15_DTa_pol#LTR/Gypsy 1750-5175  [Drosophila takahashii]
MRATGSTIYSVSEMSGGKREMELDATGGVPLPSQDDKLTASEDLKYMLKDKYKSVCKKILINKNKNKVNIGTKYVARPIE
ERERDYQQARERIFGEPRGDSHSRKSARIIRARRRYQQRKQERREVCTAIISAATTENRAFAEVLVANHPMQGLLDTGAS
KSILGDGCMDLVKRLELEVLKVRSTVQTAGGATHRIAGRIEVDVCYKQETHRISLLLCPSLRQKLYLGIDFWRKFSLAPD
VVGVGELSSIENEFHVTSEPVEPHILSEEEKTQLELVQDKFLTYERHGMGLTELETHSIQLEAGTVPVKERFYPVSPKVQ
ELLYAEVDEMLRLGVIETSESPWNNRVTLVQKPGKNRLCLDARKLNKVTIKDAYPLQNIESILSRVDETIYISSVDLKHA
FWQIELDQKSREYTAFTIPGRPLYQFRRMPFGLCNAAQRLCRLMDRVIPQKLRSNVFVYLDDLLIISKTFKDHMRILTEV
AKSLQNANLTIGLHKSKFCFRFLKYLGFVIGEGSLRTDPGKIQAIAKIPVPKNVRQLRSFLGTAGWYRRFIRGFSDVSAP
LTDCLKSKTKFKWTPAAEEGFNKLKTALTSAPVLIHPDFQSRFFVQCDASHVGIGAVLFQKDVNGNVRPIAFYSQKLRGA
QLNYTVTEKECLAAVKAVNRFRPYIELLPFTVITDHSSLQWLMTLKDLNGRLARWSLALQAYDFQIEHRKGKDNVVADML
SRIPEVEAIEVFDFETIEFESPEYLERIQTVKENSEQFPDLVVEDGLLLKRVEFVTGDTQEFPWKLWIPEALTNTLIQQA
HDSDTAMHGGIGRTLNRLRQFYYWPKMAIQVKNYVRVCNICKETKHTTQMTRPKMGKQTITSRPMQQLYMDFLGKYPRSK
RGNCYILVVLDHLTKFVWLKAMPKATADAVVRYLESEIWQEFGVPEIILTDNGVQFVASRFQSFLEKYQIRHKRTGRYAP
QSNASERVNQSVLAAIRIHVGEDHTRWDDKIVEIQGSLRSAVHNSTGVSPYFAMFGQHMFLSGQDYRIARKLDAVNDAQI
QSLSRTDRLQLIREKVTERINETYERSAKQYNRRAKEIKYLPGQEIFKRNFILSDFKNNINAKFCRKYSKCRIVRPVGNN
LYELETLQGKRLGVFHAKDLKQ
>Gypsy-12_BG_gag#LTR/Gypsy 78-1418 via tfasty with Gypsy-32_BG_gag, 1 stopcodon. [Blumeria graminis]
MNTRSYQVPPPESSLSDDESVTIQDFYSLSSSDAFPLIAKSVEENMTDNMDTDAPDNGKGKGRANQFVSQQTTNVTLSLN
SDQLQRLLAIIDTSDVNQGKTLRPNPHTDKKKASSWPEWDGSREMYPTYIIQLTAKIEADWDLLGGHKAVCMDMMNTIPK
NLxSRVSHWYTTGGPDNNWDYELYIEHFNDNFEDKTSVRTANEKLSRMRQGKHQTFASYLNDFEHMLTQARGINWEGYMK
INGLSLGLNESPTKLLMPCTLSETKYTLFVRQVRNMASKLESQEDYTPKHGPRQTKTWYISRLGVVPHNPGLNYQAPAHS
PSQDRATTVDMDGDTPMSGVSGLSTGQLAAIINAVNSKNTERSKAIRNKPPAPWKTPEEFAALRAAGKCTRCEEKGHYFK
KCPNFTWAKRPSDMNAVFTKIPNNSKSRLMESDEDEDEFGNNVSGNE
>Gypsy-8_HM#LTR/Gypsy 87-4307   [Hydra magnipapillata]
MAIKNLNLPNFPPFSCTEEASKLFSSWKRYIKRFELLCDSLVITDDKQKLSLLLTLIGDNTYEIYENIIPQDTLITYQQA
VEAFNEHFKPQVNLSYEIFIFRKMAQRIDETTQQFFVRLNEQAIKCEFADKDKEIKQQIELCTNISKLRKYSFQNPNKTL
QDLLTTAKTFELMDHQIEELEKETIKQKEVNTVKKTKFPQTSQAPHETETKSLKRTCYRCGNEFPHTNICLALGKSCHSC
GKIGHFATVCKTRKQNEQNTRIHQEKYKRNEQGYTKPLNTIYKDINESENPQSKLNEGELYSVNAKQISNDGLENFEVTI
NIENIPITVLIDTGASINILNFKTFEKINNFLKRPLRLQKSKTQIITYGDNNPKLKIEGQINVVIESQTKFRQSTFHVVK
THHKNLLSGNDAKLLGLIQLNTDVNKKLLNKGQREQNNHDDSKQQVCHSLQNLSKLNNTLLLNAPKRLEPLINSYKNSVF
SGKIGKLSNYQVKLKINESILPVAQRERRIPFALREKVKVELAKLEAEGIIETVTDEATPWISPMVIVPKNDGNLRICVD
MRAANKAIGRTRFPTPTLDDVIIKLKDSAVFSKLDLMKAFHQLELAPESRSITTFQSETQIKRFKRLNFGVNSAQEELQN
ALREVLKDIEGTLNIADDVLIFASNTKEHDLILHKVLERFKQRGLTLNFEKCLFGKEKVKFYGFIFSKEGMQPDPEKLYN
IKNMPTPENTKALQSFLGLMNYFKRFILHYSTITYPLRNLLHKDSLWNWNLECQHAFDKLKNAMTLDSCVGYFDPNKETT
VFTDASLVGISAVIVQNTPNKQDFKLISYNSKALSPVQQRYSTLERECLAIVYACEHNKTYLFGHPFKMYSDHEAIVKIL
NNPNATVPLRIERMTLRLQGYSFDLHYVKGKNNISDYSSRHPVDPCEDEGLEKYVNFTAEYACPKALSLLDIQRETKADP
ILQILTELITTNTWHKLLHPNCPPELKKFQKDLLAYRNIRQELTVNQTSDLILKANRIVLPHSLEITVIQLAHNSHMGLE
KTKSLLREKVYFPGLDTKVEEYIKRCAICQALGKQNAPAELLITPTPEEVWDTVNIDYLGPLPNGFYLVVLIDQTSKFPV
VDIIHNTSADLLIDFLQKTIAVYGIPKTIVSDNGPPFTSFKIKMFLNKLNIQHKRITPLWPQANSQAESFMKPLIKTIRA
AHIERKDWKKQLYNFLFSYRTTPHCTTRIPPSTLMFNRVTGFTIPSFQTRVDTNINDQAKKRQENAKLYRKKYHDLKYHA
KNPSLNIGDTVLIKQKKYNKITAPFEFKPYTITAKNGTMITAKSPVDNSQKTRNASHMKKVPTDIQFNPIPIKEEKDEEY
LQNESILPEKEITATMPTQLRSYHQEPILKTYPNRERRPIELWRKY
>Gypsy-8_DWil#LTR/Gypsy 1156-5244  [Drosophila willistoni]
MLHDEILQLTVSELKEKLKENNLSIKGNKAELQVRLISFFESGVEEASFYEDSLERSLQVVNDQQEVQSIMAFTLRDIQD
SLTVFDGSQQQDVDNWLADFENCAETVKWNDLQKFIYSRQLLKGAAKLFVSSEDGLTDWISLKSALEREFSEKLSAKQVH
KLLENRKKKQSESLIEYFYEMKSLAKKSTLDEESVIEYIIEGIPDSKQNKTVLYQARNFRELRENMKMYEKISTEKESKW
SRASKFEKKQQDIAINEPRCYKCGGRNHIAKNCKESEFKCFKCNKPGHKANQCSMQGKMFEKDSHKVQQLTQKLYNRVFK
DVRFGNEVISAFFDSGSDISTISESAYKRVYPVPLSSDVKELLGIGSKKIYTKGSFELDTALDGVPIKMCFHVVRDRDTL
YDGVIGNDVFEVVNATMGKQGLVFYGNTRSFGGNQVITRYSNPQDPPPVRDVSPIEELQNTFGQILTTRVENFSSEIELS
HLSIELKSKVLEIISDYSPVKPANCPVKMKIILTDEIPVYQKPRRLSYEDQKRVDQQVKEWLEEGIIRHSVSEYSSPIVL
VPKKDGEKRLCCDYRRVNQKIIRDNFPTAVIDDVLHKLQEGRVFTTLDLCNGYFHVPVEENSKKLTSFVTQNGQFEFNFV
PFGINNSAAVFTRYIFAMLRPLINEGILMLYMDDIIIPAKNESEGIERLKRVISLAEESGLKIKWKKCQFLQRKVNFLGY
IIENGTIKPSKEKTSAVENFPVPRDVKGVQRYLGLTSYFRRFMKDFATIARPLTNLLRADVPFKMGIEELASFEQLKAGL
SNPPVLRLFNPRSVTEVHCDASMYGYGAILLQKDSEDQQYHPVEYMSRRTTPAEEKYHSYELEVLAIIQALKKWRIYVMG
IKIKIVTDCNAFAMTIKKRDVPLRVARWAIFLQDFNFEIEHRSGVKMKHVDALSRVYCLLSGDSLKSKIQFAQRKDEWIS
TILKVLEKGAHADYYVQYGILYKDPVKELIVIPTSMEQEIILVAHRQGHFGVKKTVDLVEREYYIPSLWSKVEVVVRSCM
ECIVSESKQGRKEGFLNVIDKGDEPLVTFHVDHVGPMELTKKRYNHILVVVDAFSKYVWLYPTKSTGSEEVVERLQKQSE
LFGNPKRIVSDRGSAFTSHIFKEYCESQKIQHLVIATGVPRGNGQVERVNRIVIALLTKLCASDPGAWYKHVGRVQQFIN
SSPPRSTKISPFKILTGTEMRTSYDLELKSMLEEELLVELQNNKSEIRDTAKRNISKMQEENRKTFNKCRKSASEYEVDE
LVAVKRTQFGSGLKLKGKYLGPYRVVRKMRHGRYAVEKVGDGEGPKGTTTVAEYMKKWCPSFGANVEVGWPNVGSRYGRG
DFE
>Gypsy-9_DBi_pol#LTR/Gypsy 1227-4475  [Drosophila biarmipes]
MSTPTPVVLLGVRESRCQERRVLPAGGKCPATSAAERRAGVARCYLSKLTGKLIEEEQQLSAAVTIGGGTYKATIDTGAT
ASFISKELADNLAALGRITRTRRQVRLADGRCGGIDEQLEVEIAFGNKRLTMSLLILPGVVDSLVLGWNFLTQVGTEIRC
AGHEVRIPARNRHNGWLEERLSVAVVQQETEYDDTAKFLEAELASFKTMTGTSNMAEHQITMKDDKPIKQRYYPKNPKVQ
GEINAKVDELLQMGCIEHSTSPYSSPIVMVRKKTGKWRLCVDFRQINAKSIKDAYPMPRINYILDQLREARYISSLDLKD
GYWQIPLKESSRQYTAFTVPGKGLFQWRVMPFGLHSASATFQRVLDRVIGPEMSPHAFAYQDDIIVIGRTLEEHKANLKE
VFRRLKDANLRLNPEKCQFFKKELLYLGHRVTSDGIGTDPEKVAAIAELEPPSTVRELRQYLGVASWYRRFVPDFAKIVK
PLNDLLRKGNKWVWTQEHQSAFEEVKARLVADPVLACPDFEKPFVLQTDASDYGIGAILTQETERGEKVISYSSRTLNGA
EKNYSTTEKECLAIVWAIRKLKPYLEGYHFKVVTDHMALKWLNSIESPSGRIARWALELQQYDFEIAYRKGQLNVVADAL
SRQPLPVTLRGIKETSAAEASAACSWIQDMRGKIRTQPQKYPDYVMEGDTLYRNIPHRAGSEDVATWKMCVPKALREAVL
KENHDSPAAGHVGSRRTIARLAARYYWPGMHRDARAHVRGCETCIRFKPNQMQAAGKMLTQVPEEPWATVCADFVGPLPR
SKHGNQMLLVLIDRFSKWTELVPLRSATAESLKKAFRERIIARFGVPKVVITDNGVQFNSKIFKSFLAEMGAKQQFTAPY
TPQENPTERANRTVKTMIAQFTGQDQRNWDEKWPEIMLAVNTSVSESTGYTPAFITQGREPRLPSALYDRETLGTGRPTE
TPGEKANKLGEIFEIVRRNLERASQDQARHYNLRRRQWTPAVGDVVWAKEHHLSKAAEGFAAKLAPRYDGPYQVTDFASP
VICKIRHVNTKKERTIHVSELKQQQTQNTSEQPQADTVDKRQQ
>Gypsy-11_DWil#LTR/Gypsy 543-4597 via tfasty with Bica, 1 frameshift and 3 stopcodons. (small deletion) [Drosophila willistoni]
MLVKLSTLQVAELDIILQTNNIHVNGNKQAKIDEITTILGTDQINTDEYDFNQQNSTMQRQMDELKQMVADLSQAVSTIN
VRTQNLMTERQERANEPARSEENHQHDVVEQQSMGQRISPRDYKSNTSIKDVIGMLPEFDPIKGAVNSQQFLDKVEQLQI
VYEWRDATILFAVQQKLRGVAKDWLDSQRLYQTWSQFKDALLKDFPSVVNISDVYRQMMRRKRKHNETLIEYFYSMMAIG
RKGNIDDKSINSYIINGLNQQESTKALLAMNLCTCAELFRSLENMNSSSVWQSYRTAEYASSDTAKTMEVNKDNNAKGPK
CFNCNNIGHIAAKCPVESKKPRCSFCSKIGHEGKDCRLKRSTVSKVDSIKDKKRPPILKKILIEGHEYEAFVDTGSDNTF
MQKSQVPIDAVLQVMTNSFRGFGGGIVESKECLLTEIVWDNKRIDVCIYVVQDKELNYAVLLGRDILCAEDETKVETKST
NSPTEVKCEFDIGAEVDDPQRKQVSDLLNAYTECFAEDFSNIGRCKSTKMEIKVTTTNPIVGRRYQVPFAKRDALRTVVD
ELLKYNIIQRSTSPHAASSILVPKPNGEHRLCVDFKTLNAVTVKQHYPMPVVEEQLAKLAGNHFFTTLDMTSGYYQIEMS
NESKREQRLDIIKxKxATVKSEGLTLRPSKCKFMKKEVKFLGHIVTGKGIQPGKKKTQCIAEYPQPTNEIEIRRFLGITG
FFRKFVPNYSIIAQPLSMLLKKKQNFIWTPDQNEAFNRLKEAITTEPVLTLYDPTKYHEVHTDASTTGISAILFQQEDED
IKPVFYFSRLCTDSESRYxSHALEVLAIAESLERFRVYLLGSQFSVITDCNAVATLKNSTALQPPIARWWLRLQEIDFIC
KHRPGLDLPHVDGMSRQPVLKEQSSIMETDGIFKVIPIDDDWVYTMQKQDPKLKQIFEIFQMKDKSADWKQIKNDYVISK
SRLLRKTDKGDKLVDPQAVRWRITKSNHDDVGHYSAQKTMERIGRYFWFPRMRKFIKSYIDSCPECCINKIKGGKPDGEM
HLQDVIPMPFRTINIDHIGPFPKSKSGNIYILVIVYAFTKFTILVATRNTKTIPVIKALSHMFGIFGQPLRIISDRGTSF
TSKEFKDFVQNYGIQHIKTAVRTPRANGQAERMNKTLLNALKTSTYKNKDWDQQLFNIQWSMNTNVNSTTKFSPNDLVFN
FNPKDVSYNRIIQAMTEDQFEETDVQLNRHQAAENIKAEQEKWKKRFDLKHAKPQKFEVDDLVVIDYVPMATGDTHKLDP
AFKGPYVVTKVLGNDRYIVEDLPDRSVSQRRYSNVISSDHMKPWCVLIPGLDIEEEGYDYIGINEEESGEAG
>Gypsy-10_HM_pol#LTR/Gypsy 836-3607  [Hydra magnipapillata]
LLNTISASANSLFRVCHNIIVNDKYKAEALIDSGSTNKSFINNKLVALLNLNIIYEQSVIGMASASLSAKSDGYCYVSIT
LQNEIYNKVKLHVLDNLCVDVILGTDFQELHESITIKYGGKRPPITFAALTTMKTEPPELFANLTXDCQPIATRSRNYSQ
RDKEFIKSEIHRLIQAEIIEPSNSPWRAQVLVVNEKTKRRMVVDYSETINKYTQLDAYPLPKIETIVNIISKYKIYSTLD
LRSAYYQIPLSKKDRPYTAFEADDKLWQYTRMPFGVTNGSACFQRKIDDFVRKYKLTDCFPFIDNVTICGNSQKEHDENL
LKFRLAAIDAGITFNEEKCVFSTKTLDFLGYRISYGSLKPDPQRLAPLIKLPPPDNAKSLQRIIGMFSYYAKWIRKFSDK
IRPLNSVTQFPLNQQRISAFETLKNELVQSSVQTIDENIPFTVETDASDFAISATLNQDGXPVAFHSRTLQGSEQYYSSV
EKEARAIVEAINHWKHFLLGRHFILITDQQSVAYMYDYKSSSKIKNDKIMRWRIALSPYSYDIHYRPGQCNSGPDTFTRV
KCAAISSESLYDLHAALCHPGVTRFHHFIQSRNLPYSVEDVKQICRDCRICKEIKPKYYRPNDVHLIKATQPFERISIDF
KGPLPSSTPEQYMLTIVDEYSRFPFAYPVKDMTTQTIINCLADLFSMFGMPSYVHSDRGSSLMSSELKHWFLSKGIATSR
TTPYNPTGNGQVERYNGIIWKSILLALKSRNLPISSWKRVLPDALHATRSLLCTSTNCSPHERLFNFQRRSSSGSSIPSW
LVNPGPVLIKRNAMQSKYEDSVNEVQLIEANPHYANVRFPNGHETTVSTKQLAPIGTTPIVQTSNDNLEITAIDNYPLTP
NGSNETPLVSEGELESRVNPIEQSTLPPRRSSRISKAPEKLNL
>Idefix_gag#LTR/Gypsy 1-843 fragment (N-terminus missing, as if IDEFIX-LTR contains some internal sequence [Drosophila fruit fly genus]
KRLLVDSALEVVTQERANTWLDMKKALAMAFKDHRPYVTLIRQLEDISYPGSICKFIEKLETQYWIMFDKLELESDHVDK
SNYTEMLNKTVKSVIDRKLPDRIYMSLARKDIDTIYKLKQASMELGLYDAIPENHRSNRTEMNKRRNRGNYNQNNNQKYY
NNRNHNYSNYYPSMNQNHNTQPPQNPTQPMTNQNQYSPRFIPNNQRGNYYAFRRDLTQAQQNNPLNNTLNFQPSTSNNIN
RQGPVKRQRESQSDQSRMDVNFHQAASDTQMIEKDIQVPM
>HMSBeagle_gag#LTR/Gypsy 1221-2663 (Gypsy2_DM_gag (617-2050) 90% similar) [Drosophila fruit fly genus]
ACFVQVLSELKISMANPNNIIRPSAFSSNERPVPSERHDLPEQHRVDMSVEQLTALIGQTVAQVLPGLIKQMNNNTLDFT
DVSDQVVEPEYRNNLADFDRVPDIVKSIREFSGNPAEFGSWKKSVDRIMETYTPFVGTPKYYGILHTIRNKIVGSADVAL
ESYSIPLDWKAMSRCLTLHYADKRDITTLEYQMSTLVQGHQQSVEDFHQDVYKNLSLILNKVGCMQMSRESEHFVTKMYR
EKALDTFIRGLRGDLPRLLAIKEPADLPSALHYCLKLENQTFRSNHAANKGQQSSFRGNEKPIPAPRNFQPSNAFGHRQP
PPVPPRHPMRRPPQYLGQPFPAPRQHVSNFGNAPFIPPRQNYQQQWQQYNAPPRPFATKPQPRPEPMDVDGSVQTRNINY
MNRPHSDINKRQKNYNIQTVNMRQPSIEVTGSSSSMTGYQRSMQDYETQNNINGTLNEYCDGQIDNLDSEQRDHVLHFLE
>LATIDU2_TM_pol#LTR/Gypsy 2323-5811 [Triticum monococcum]
PRNNNAKSYGLVHANHVDLNEAQDQPATVMGTLLVNSVPASVLFDSGASHSFMSEDFAYKHDVKCEEMNTSVLVKTPVGQ
CQTSLVGIDVPVEIEGLEFYASPIILKSSNIDLILGMDWLKAHTASIVCATKVVHLLHPSDEIIAYQAHLVQNAEARLYA
LNALNDAPLEGIENIPVIREFQDVFPEELPGIPPARAVEFIIDLKPGTTPIAKRPYKMPPHELIELKEEIDKSLVKGFIR
PSCSPWGAPSLFVKKKDGTNRLVQDYRPINQATIQNKYPLPRINDLYDQLTGSSVFSKLDLRLGYHQIRVREEDIPKIAF
VTRYGSYEYTVMSFGLTNAPATFSRLMNYIFMDYLDKFAVVYLDDILVFSKNEDEHAEHLRLVLEKLREHQLYAKYSKCE
FWLPEVTYLGHVISKDGIAVNPERVQAILDWTPPKNVKQVRSFLGLASYCRRFVENFSKIARPLTNLLHKGVKFDWTDKC
QESFQALKDKLTSAPVLAPPDTKKDFVIYCDASRQGLGCVLMQERRVIAYASRQLHPHEENYPVHDLELAAVIHALKQWR
HYLLGNRCEIFTDHQSLKYLFTQPDLNLRQQRWMETVADFDVGISYTPGKANVMADALSRKYYCNHLQVHKVHPSLVEEF
RRLKLHIVPPGSLAPPPEDFPKLNLHVVSKGSLNTLVAKPDLVDTIKWIQKCDDEVLKIKRDLKKGKPSFFTVADDGALY
FKGRLVVPCSKKNLDKTKGVMQEAHDTPLSIHPGSTKIYQDIRQRFWWSNMKQDIARYVAECDVCRRIKAEHQRPARTLQ
PISIPEWKWDHVEMDFVTGFPKSQKGNDAILVVIDRLSKVAHFLAVKETITASQLATLYMVRIVSLHGIPLVISSDRGSL
FTSRFWASFQEAMGTHLSFSTAFHPQSQGQVERVDQVLEDMLRACVISFSKKWEESLPYAEFSYNNSYQASLKMSPFEVL
YGQKCRTPLNWSETGERPLFGPDIIQQAEEQVRIIRENLKTAQSRQKSQYDRHHQDMVYQPGEKAYLRVTPMKGAHRFGI
KGKLAPRFIGPFTILERRGKVAYQLELPPNLSQFHDVFHVSQLRRCFKDPIRAVDHEVLELQQDLSYKEHPVRILDQAER
RTRQKAIKFLKVQWSNHSEDEATWEREDRLRDEYPALFPSTSxKSRDEISCSGGD
>Magellan_ZM_gag#LTR/Gypsy (obivously a small bit) [Zea mays]
MAGAADPSVAAALDAQSKSIDIQSRTLATQSKILQQLCDRLDSQDQKWNNLEQAVDRNATKIVALQGNLGSGGETSLHSD
LGRIDDFIAQTTTRMAGLETATSAFESWRPRVEGSIDSVRTSVETMRSELGRLTQLLEGGLRGGPEARTSILGPFIPVAE
RPSVAATHTDMRPWAPPCSSSSGAWR
>LYDIA_gag#LTR/Gypsy 254-1649 via tfasty with TED_gag, 1 frameshift and 2 stopcodons.  [Lymantria dispar]
KIFHRENSYREPASRQARWNTIDLIRNLGSSPPQSSENMAxGQANVVVITHDPDTIFKVLRLVPDFDGNPNILTRLINIC
DRIVVQYLSDQPGNELANLCLLNGILNKITGSAASTINSNGIPDSWLGIRTALINNFSDQRDETALYSDLSLAKQGTKTP
QEFYDQCQTLFSTIMTYVTLHEPISTTVEAKRILYKKIAMQSFVRGLQEPLGSRIRCMRPETIEKALEYVQEELNVIYLQ
QRNDTPKSVNTPRTFNYVPPPINFNKPRVQNIVSHPPNWPAPVGFKSHQLPPQPFKFNPLQNQQFQQRIPNRTQQIFRAQ
PPGYNPHSNVFRLPPRNVPPQNLGPKPMSGIQHFTPKPILSGHDWRKSGNPPPSNYFKPREMNVNECAxYDDSYYPEYCY
EHEDSYFYSNYYNDYIPYATEECTYNTTYYDTTNDIQITEDIEPQPGTSSSDPDFQLDPVSKRPK
>GYZMA2#LTR/Gypsy 80-4740  [Zea mays]
MDSAMQKVLEALSQMEERMTATLENRCSAIEQRIDAMAQQAEARFISLEMGHSEVDTWRPEVERRLENLFLESKRATKFM
ERETIAADQTKPGLFAPSGSASGHPSAGKQPADGPFGHRAEPCHRARGFGHGHAQTHVPVKGTYHDSPRIDPFDDSVRHT
ELNGGHEGFRCGHGNLPRVNFPQFDGDNPQLWKTLCENYFDMYDVEPYMWIRVATMHFIGRAASWLQSVGRRVCMLSWSE
FCRQLQDRFGREQHESLIRQLFHIHQSGTVAEYVEQFSILVDHLSAYEANADPLYYTMRFIDGLRDDIKAVIMVQRPSNL
DTACSLALVQEEATTARRWRRSEPSSSHAGPKTGVQLSASTKWTSNKDSTQSASHSDKLESLRRFRRAKGLCDKCAEKWN
PGHKCAATAQLHAMEEVWSLLVDEEVPESDLSPPEPAPEQLFVTISKSAWTGSTGRQTLKLNGSIQNHPLLILIDSGSSH
TFLNDQLRPHLQGVTSMASTLQVQVANGAMVTCHYKLLQAQWQIQNCSFTSDVSFLPLPYYDMVVGMDWLESFSPMRVDW
AQKWLIIPYQGSSVLLQGNTAGVPADTVIELLFMESASSVSSSPDSHPAIQALLQQFSSVFAEPQGLPPSRDCDHAIPLV
EGAQPVSVRPYRYPPALKDKIEKQVQEMLHQGVIQKSNSSFASPVLLVKKKDMTWRFCVDYRYLNALTLKSKYPVPVFDQ
LIDELAHSKWFSKLDLRAGYHQILLKPGEEYKTAFQTHVGHYEFRVMAFGLTGAPNTFLSAMNETLKPVLRKCALVFFDD
ILIYSKSFEEHLLHLQKVLQLLLSDNWKVKLSKCEFAKTNTAYLGHIISEQGVSTYPSKIQAISSWAVPTSAKELRCFLG
LAGFYRKFVKHFGIISRPLFDLLKKHTLFVWTVDHSKAFEVLKQALVTAPVLALPDFSQPFCIHTDASYYGVGAVLMQSG
HPLAFLSKALGPKNQGLSTYEKEYMAIILAIAQWRSYLQLAEFIIYTDHRSLAQLNEQRLHTIWQQKMYTKLAGLQYKIV
YRKGVDNGAADALSRKVQEDSHCCAISHSVPTWLQEVVEGYDKDPTSKQLLAQLILNSADKAPFSLHQGIIRHKNRIWLG
GNLQLQQKVLQAMHDTAVGGHSGAPATYHKVKQMFYWPGMRADVLQYVQSCTVCQQSKPDRAKYPGLLQPLEVPPQAWHT
ISLDFIEGLPRSAHYNCILVVVDKFSKYGHFLPLLHPFTAAKVARVFLDNVYKLHGLPVNIISDRDRIFTSSFWQQLFQI
TGTNLSMSSSYHPQSDGQTERLNQCLETFLRCYVHTCPSRWSAWLSVAEYWYNTTVHSTLGRTPFEVLYGHTPRHFGILV
DTVVPQPELETWLKERELMTKVIKLHLHRAQDRMKRQADKQRSERVFSVGDWVYLKLQPYIQSSVATRSNHKLSFKFFGP
FQITDRLGSVAYRLALPASSSIHPIFHVSQLKRVIGRDQRASPQLPQDVGPIQVPTRILQRRFIDRGGELIAQVKVVWSG
MTEDLATWEDVEALRARFPKALIWDQAGARGQG
>Gypsy-98_GM#LTR/Gypsy 22-4367  [Glycine max]
MADHNTRKTTTDRLEEAISRLSLHHSELASKVDAILDRLDRQSSASPVSSPKPPPASRTHVKIDVPRFDGSDPMGWIFKI
TQLFEYQGTPEEERVTLASFYLDGPALSWYQWMFRNSFITSWSSFLQALESRFAPTYYDDPKGALFKLTQTGSVNDYLTE
FERLANRIFGLPPPFLLSCFVSGLAPDIRREVLALQPISLPQATALAKLQEDKLRDRPRPPCHPSTNPYTLPSHPSPFPS
PSPPPRPKAPFTQRTPSEIAYRRERGLCYNCDDKWSATHRCKGRVLLLIADPDNPDNPDNPSDSPPLSPVASSFRPEPNL
SPAPDFSPPTPHISLNALSGLPTPETFRLFGYINHTRVTVLIDSGSTHNFLQPRLATFLRLPTVPTDPLRVLVGNGAVLT
CTHLCPDTTISLQSHLFTLTFHLLPISGADVVLGIQWLKLLGPITTDYTSLVMKFTHLGHPVELHADADTGPHPISATQI
KRIIQTKATSAFFHLCVLPAIDTNHHPPMPTSIPAIDALVTKFHSLFHTPNTLPPSRSIDHHITLRPNTEPINVRPYRYP
YFQKAEIEKQVAELLSAGLIQVNRSPFSSPVLLVKKKDGSWRMCVDYRALNAVTIRDRFPMPTIDELMDDLGHASWYSKL
DLQQGFHQIRMAPADIPKTAFRTHQGHYEYRVMPFGLCNAPSTFQAAMNTLLQPFLRRFTAVFFDDILVFSDSLQAHLHH
LELVFQALLQGQFYLKYTKCSFAQRRLEYLGHIISERGVEPDPSKIRAMVEWPTPKNPKDLRAFLGLTGFYRKFVRGYAT
LASPLTALLCKNAFDWTPESQIAFETLKTAMTQAPVLALPNFEYPFVIETDASGTAMGAVLLQQNHPLAYFSKPFGPRLL
HSSTYVRELHAIVSAVRKWRQYLLGHRFTILTDHKSLKDLLSQIIQTPEQQHYLSKLLGYDYDIQYKTGASNAVADALSR
VTIPPESQYLFLSIPNFTFMDQLRQSLHDNTEFQTTMTNVQAQPSDHRDFTISNGLLFFQGRIWLNHDNPFIPSLITEFH
STPLGGHLGIAKTTHRVNANFYWTTLRHDVKQFVRNCVTCQQSKNSTSRPAGLLHPIPIPSGVWEDLSLDFITHLPCSHG
FTVILVVVDRFSKGVHFGALPTNFTAYKVAVLFLDMVCKHHGLPRSLISDRDPVFVSSFWRELFRLSGTRLRMSTAYHPQ
TDGQTEVMNRVLEQYLRSFVSAHPSDWFKFLAMAEWSYNTSVHSGTGFTPYEIIYGKAPPSIPHYITGSSNNEAVDSLLT
SRQELHDTMKHQADGHRRDVHYDVGQWVYVRLRPLRQRSLSGPAHPKLSKRFFGPFQILEKIGPVAYRLQLPSTAKIHPV
FHCSLLRPHHGPLPPAATDPIPLTMIDNHPVLRPLSILSSKSDDSTHPPTRLVLVQWEGQAPEDSTWESWDELKEQYHLE
DKVDLEEGG
>Gypsy-57_NV#LTR/Gypsy 94-3898 via tfasty with Gypsy20_AG, 5 frameshifts and 2 stopcodons. [Nematostella vectensis]
MGDTATFVKVNKFHPGGDWESYTEQLDFYFIANNVTEEKTKKAIVLAYLNPDTFQLLKDLIQRAKPKDDTITYDVIVKTL
KGHTKPEKSPIVARYEFDNRYRKPEESVSEYVATLKHLAGDCKFSDEVRSERLRDRLVSGIRDDKMLRELLKEKLVDLNF
ENAGEQANKDVLAFRTEELHSEVNKLEGNNGQKHFLRDGDTTGNPRKPPQSATVSKCYRCNGKHDPRSCVFSQSKCFSCG
KIGHIKRACRQVKPNEKPQATHTGVKVMNENYGREETEGDDGWYGLYEVGSKPSRKPISVDIEVEGIGFQMELDTGAAVS
VISEAKYRECLRHVPLEHTDLKLHTYREENLVPLGAITVKVRYGNQDTSLPLYVIPGNGPTLFGREWLHSITLNWPLLNL
TASKNLEDVLSSHASVFKEDLGTLKGIRASIQLKDDAVPKFFKARPVALARKPAVERGLEALEAQGMIKKVDHCDWAAPI
VTPFKKDGEVRVCGDFKVTVNPQLRVDEYPLPRIEEIYASLSGGKQFSTLDLRQAYLQMELEDDAKRYLTINTTRGLYQY
QRLAYGIASAPAIWQRAMDQVLQGIPHVQCYLDDIIITGSSPEEHISTLDKVLGxLEDFGLRVNRKKCTFMRDSVEYLGH
IISADGLHQSKTKTEAMTQLPNPENVGQLRSFLGMVQYYSRFLPDLATHLAPLHKLLQKGVSWVWGVEQSFRKVKGMLSE
ERVLTHFDPDLPLILACDSSSYGLGAVLSHVLADGSEIPIAYASRSLSKTERKYAQIEKETLSLYWGMRKFQMYLEGRKF
KLITDHKPLKYIMDPGKGVPITTAARLQHGVFSQEHANCDGLSRLPLVQTPADEPDEVELFHMSVLDVLPVTERELRRET
NRDPLLARVVRLVETGxGGAEPNPDLAPYSSRKEQLTVCHGIIMWGNRVVVPPKLRRRVLDILHEGHYGMVKMKGVARGY
IWWPRIDSEIEATAKRCQGCQETARNPARAPLHRWEYPAQPWQRLHIDFAGPVAGHMVMVVSDAHTKWPEVFIMHRDTTA
LETVNSLRTLFARMGLPEQIVTDNGPQFKSREFEHFNALTAAQADRFLFAYRNAPHATGYSPAQLLFGKRLRSRLDLILP
DVRRDVGKQLLQDEHRNLTCFEPGSVVWLRNYSRWMRGKVLERTGLLMYTVKVHDYSWRRHVEQLRSANPGEGSEVLDNP
VDPALVSPEAGPTATMVTTTELTPTEQPVAEPEMPEAIGDVASPTALRSSQPRPTRSGRVVKPPGRFV
>Gypsy-115_DR_gag#LTR/Gypsy 18-962 [Danio rerio]
MDPASISGLAEVVAHATTRMNRHDDQMVTISRAVQALVTQISDLTTRLQRLHAVGLQQPVAANLSPSMPVPERTAGFSEP
RLPPPAFYSGEPEFCRAFLAKCSLYFSLQPSSFSTEESKVAFVITLLTGRAAQWGTAVWERKLPCCSSFDTFSTELKKVF
DRGLAGREAARALTELQQGQRSVADYSIEFRTLAAESEWNAQAQWDVFLHGLADQIKDKIFTLDLPKTLDELIDLAIRVD
SRLQLRERNTRRTHALVRSPFPAVTVVPGQEATPLADPEGMQMGRSRLSLEEKRRRRSEDLVFHSGGVDHIAIH
>Gypsy-165_DR_gag#LTR/Gypsy 18-1052  [Danio rerio]
MDPEALSTKELLAVIGSHEASFQRHEEVLRRQEEVMTKHSELLADVTSSIRQLFQSLPGVSSPASPAAPPLSTNSPPIAP
VAAAEPRLPPPKPFSGDPSSCQGFLTQCSLTFELQPSSFPTDRSKIAYIITLLTDKALSWASAAWESQPSYCQSYTAFEK
EFKKVFNHPVSGQEASKRLLTLRQGPRSAADFAIEFRTIAAGSGWNDEALRVCFLGGLAESIQDEMATREPAKDLESLID
MAIRLDIRLRERRMTRGRASHSQTPVHKPASPVHAPPVRLLPVNEQAPEPPEDMQLGRSRLSPSERDRRMRERRCLYCGM
SGHFRSTCPELSGNEGPHRVTGGL
>Gypsy-137_AA#LTR/Gypsy 1052-4852  [Aedes aegypti]
MSLTTTTEPYVPGTIPFSQYLEQLEFLFEHNNYSADKYKISFLAVCGTEVYNQVKLLFPGQNVRDLTYKQITDELKKRYD
KKDNDVIHTYKFWTRRQGQHEKSEDFVLSVKQLAELCGFGDFKDRAIRDALVIGTYDRQLQKRLFDEDDLTAAKAEKLIV
NQELSTDRTRFVNRDDDKRVSVVARLGRRLDRGPSRQSFRSRSRSFDRNRSFYNRSRSGSRRNEIHDPDKVFTCSFCHKT
GHTKKFCFRLKRKSPKKTPRKSKPFVKFIGSPKPLPSQTSGLFKRLKKDLASDSEDEDLPCMMINARSKVNEPCYVEALV
QKTRLTMEIDCGSAESVISEALFLRNFNKCSIENSRQRLYVIDGNRLSILGKARVSVRLNGITEELYLIVLQGDKDFVPL
MGRSWLDIFYSGWRDTFSRPVVPNRRVNAMTDVDARDEAVEEIKSKFPELFDKKLLNPIVGFEGDLILKDDTPVFKKAYE
VPLRLRDKVVEHLDALEKDGVITPIEASEWASPVVVVIKKDKGIRLVIDCKVSINKLIIPNKYPLPLPQDLFAALSGSKV
FCSLDLAGAYSQLLLSKRSKKFMVINTIKGLYVYNRLPQGASSSAAIFQKVMDQVLKGLENVFCYLDDVLIAGKDFDDCR
KKLFLVLERLARVNIKVNFKKCKFFVDNLPYLGHVLTDAGLLPCPDKVQTIREARAPQNVTELKAFLGLITYYSKFIPNL
SSRIRVLYGLLKKNVRFDWNADCDLVFNQCKQFLLKPNLLEYFDPDKPVVVVTDACNYGLGGVIAHVVDGEEKPISFTSF
SLNDAQKKYPILRLEALAVVSTVKKFHKFLYGKSFTIFTDHKPLIGIFGKEGRNSLSVTRLQRYVIDLSIYDYDIVYRPS
AKMGNADFCSRFPISQEVPKELDRDYIKSLNFTGDFPLNYKAIAAETEKDEFLLRIMEYLRKGWPDRLEKRFXGVYSHHQ
GLEIVDGCLLFKDRVVIPDCMKREVLKLLHRNHSGMHKIKQLARRTVYWFGMNGDIEQFVRSCRVCQETTALSKRAPYTP
WIPTKKPFSRIHADFFFFEKKVFLVIVDSYTKWVEVEQMKTGTDSKKVIKVSLGVFPRFGLPDVLVTDGGPPFNSEHFVN
FFKEQGVVVMKSPAYHPESNGQAERMVRLVKDVLKKFLLDPETRKLDMEEQISYFLMNYRNICLASDGAFPSERLLSYRP
KTTLDLINPKHSFKYNLTEPDDGDQRACSSKTDKTHDLLTNLRNGDLVFYKNPETKLTLDNGYLQNI
>Mbcv_pol#LTR/Gypsy 1021-4845 [Monosiga brevicollis]
PPEQGVPKKLGPGVGEPASSTSPDPNPEGVPSQAARTSATDSLPPREEPRPVVINSVSVFSPRQDPGPLMCVGAMGSTAV
TFLFDTGCDRSLLSAQLASSLSLPTRNGPPFDVIFGNGTRIPVETYTEVSLQLGPLTVTRSFPVVALFDAADVLLGRDFL
SEHDIVISARQRTATFPGAVQLPFIESPTPIGLRSLLRQKSAAAYLVWVSTTPDNSVRCFSATLGRSSSTSNDRDALIDD
IRNEYSDLFDDGPTQAPAPAMRGVESAEHKIILTDNAQPVKQRDYRRGEAELAALKQLLTDMVRDKVIQPSTSPWSSPVL
LVKKSNGSWRFCVDYRALNKVTVKDAYPLPRIEDCLSRLRDATCFTSLDLRSGYHQIPMAADSVPMTAFTTRYGSYEFRV
MPFGLCNAPATFQRTMNQLLGDFLDDFVIVYLDDILIYSPTWADHERHVRRVLDRLRDAQFKCNIAKCSFFQDQVDFVGH
TVSRNNIAMQTSKLAALRDWPLPATTTQLQRFLGFANYYRRFIASFSKLAKPLTDRAKNSLKRVKLAWTPQMKSAFEDLK
KALLDGPVLMIPDTSGQYPFSLQTDASDECIGAVLSQQGRIVDCFSQKLHDAELNYPVRDKELLAIVRALKRYAHLIGNQ
TVDVYTDHRSLQYLETTKLQGPVPQRRRLDRWWMDTLQHVNMRVIYLPGQHNVAADALSRMHVKDEDVTTFTAAEPVLGE
DEDGTAIRDGGVAFVAAAANQANETTSAPGSTTVLQLSSDLYPQLVEGYRTDPDWQAVYAGHADPSSKPPRRGRLGIRFR
RTELDAATGLLYYALQPSSKAINNSADRRRLVVPQGPVRDLLLAEHHSTPLAGHLGYERQVATMRDKYWWRGLSTDLKDF
CARCPKCQLRKDPTTARNGPLQPLDPPSTPFTHVTMDFITGLPKCEGCDAILVVVDRLTRMVMTRATKKAINALDTARLI
LEMMLPMGGMPLSIVSDRDTRFVANVFQKMCKAFGTNLDFSTAHHPQTDGLTERYNRVLIECLRTGAETDRDNWVQMLPM
ATYAINSTTHKVTRLTPLFAATGRHPVTPSSLLVQPKAAAFGDNDADSELRHLQSIWQYVADVTALGQEEAAERYDRKVN
MVEFKPGDWVVVSIKAVRSPTDRATHSSKLGARCIGPFKVLERVSANAYRLELPNDVRAHPVINIEHLRRYQLPANAAED
FRPAPVSRDSYGGNYLVETLLDKRTVRPKGRAGRPRIEYLVKWMGYSKEEATWEPRASLHDFYIKEFEAARPRT
>RLG_scTat_1_2_pol#LTR/Gypsy 3281-6451 RLG_scTat_1_3_pol near-identical [Saccharum hybrid cultivar]
MPGIPREVAEHALEIRAGAKPVKQRLRRFDEEKRRIIGEEIHKLLEAGFIKEVHHPEWLANPVLVRKKSGKWRMCVDYTG
LNKACPKVPFPLPRIDQIVDSTAGCETLSFLDAYSGYHQIKMKESDQLATSFVTPFGMYCYVTMPFGLRNAGATYQRCMQ
HVFGGHIGSTVEAYVDDIVVKTQRAGDLVSDLDVAFKCLRAKNIKLNPEKCVFGVPRGMLLGFIVSKRGIEANPEKISAI
TKMGPIRDLKGVQRVTGCLAALSRFISRLGEKALPLYRLLRKSDHFSWNLEAEEALTKLKATLSSSPILVPPTPGEPLLL
YVAATSQVVSAALVVERAEEAHTLLVQRPVYFVSEVLSETKCRYPQIQKLLYAVILTRRKLRHYFEGHPVTVVSSFPLGE
IAQNREASGRIAKWAVELMGEALSYAPRKAIKSQALADFLAEWTDTQLPPAQLQAELWTMYFDGSLTKMGAGAGLLFISP
LGVHMRYVIRLHFPASNNVAEYEALVTGLRIAVELGVRHLDVRGDSQLVIDQVMKNSSCHDPKMEAYCQEVRRLEDKFHG
LELNHIAHRYNEAADELAKIASGRATVPPDVFAKDLQRPSVDLRPDGGVDEASIDLPPEAEAPSTGAEAMQVENSTSPPD
LEPDWRVPYLDYLIQGDLPSDRTEARRIARRAKTFVIMNDSRELYRRSPTGILQRCITKEQGRNLLGDLHSGACGHHAAP
RTLVGNAFRQGFYWSTAVSDAVKLVRSCEGCQYYARQTHLPAHALQTIPITWSFAVWGLDLVGPLKRTTGGFTHLLVAID
KFSKWIEARPITSIRSEQAVLFFTNIVHRFGVPNCIITDNGTQFTGKKFLDFCDNHHIRVLWSAVAHLKTNGQVERANGM
VLQGLKPRIFDKLNKHGKRWAAELPSVLWSLRTTPSRATGFTPFFLVYGSEAMLPTDIEYGSPRLKAYNEVHNDATRQDA
LDQLEEARDVALLHSARYQQGLRRYHDRYVRKRDLSVGDLVLRRNQNTKGRHKLTPPWEGPYIIAEVLKPGTYKLSNEKG
EILTNAWNIEQLRRFFP
>RIRE7#LTR/Gypsy 1134-5896 [Oryza sativa]
MTGGSGEHPQHSPRTRGIIQHFERQVREHAEGLDEDVRVANDRLGQLEAAQINTNSKLSSLERSLVAVNTSLAGILNTLE
RIGQDGHDGSSRRNHNGHDANSSIAAREELEYAADTEHDEEVLGRPQRQQRRQRHGMGAPPRREVRDNDDSLGKIKFTIP
CFDGKYDPDAYLTWELAIVQKFACHDFPENKRVRAATSEFTDFASIWWSEFVRSNPNNTPQTWDAMKRVMRARFVPSYHA
RDLLHKLQQLRQGNKSVEEYYQALQIGMLRCGLVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQG
RRASFRTNISAGCASSWTSSNAAAPSTRAAAPSCSSNKLRPSTTNSTPCPSEPTRGVAATPSKSSSSVASSGRTRDIQCL
RCKGYGHVRKDCPSTRVMIVRADGGYYFDSDLDEETYALLATNNAGEGDAPHQDEEHIRAEAAEHYESLVVQRVLSAQME
RAEQNQLHTLFQTKCVIKERSCHVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSY
HDSINCDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIA
ANELEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVFCYALVCKETLFPIEDTPISLRPPVTNLLQEYADIF
PKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCV
DCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFM
RLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAK
VEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNK
TFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQA
KHNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKF
VLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKMEDILADHFFWPKKRRDVERFVARCTTCQKAKSRLNPHG
LYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDR
DTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPF
EIVYGLLPRAPIDLLPLPTSERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRF
PNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSPTFNIADLKPYLGEEDELESRTTQMQEGE
>RLG_scTat_3_1_pol#LTR/Gypsy 4260-7717 via tfasty with Gypsy1_OS_pol, 1 frameshift and 1 stopcodon. [Saccharum hybrid cultivar]
MNKEDSIKWLQRRTEEYRSGKNDMHETVEDFGDMDKLGQGFSSADPLQEIDIGDGSVPRPTFINANLEADQKSKVCALLR
EFVDCFAWDYSEMPGLSRDLVEHRLPIKSGFRPYKQPSRRFNSNLYDRIKEETDRLLKAGFIRPCRYAEWVSNIVPVEKK
NTGKIRVCIDFRDLNKATPKDEYPMPIADMLINDASGYKVISFLDGNAGYNQIFMAEEDMSKTAFRCPNFIGLFEWVVMT
FGLKNAGATYQCAMNLIFHDMLGIILEIYIDDVVVKSDGFDHHLADLRLAFERMRRYGLKMNPLKCAFGVSAGRFLGFII
HEHGIEIDPKSVESIRKLEEPICKRDVQKLLGKINYLRRFISNLAGKIESFIPLLRLKHEAEFTWGAEQRDDNNIKRYLS
SPPVLRAPKSGVPFRLYIAAQEKVIGTVLTQEDGGKEYIIAYVSRRLLDTESRYVLIERLCLSLYYACTKIRHYLLSSTC
IVACQTDVIKYMLQQPILSGRIGKWAYALVEYDLTYESLRAMRGQVVADFIVDHRIKDEEDVSYISVCPWKLYFDGSVCR
DGQGVGNVLISPNNVAYETSVRLEYPYTNNQAEYEALLFGLQSLVDMGVRDIDAFGDSLLVVQQINGEFQCFDGLLNSYL
DRCLDIIKSLDTFTIRHISREENFRANHLAQQASGYQVTSGKFLIMEKPMLAIIKSKTDLQVASSVLGKIESSWAQQISS
FGVQGSQTTESINELEPSDWRSPIINYLKDPSQTRDRKIRRQALKYTLLNDELYRRTIDGLLLKCLDSDQSRIAMGEVHE
GICGTHQSAHKMRWLLKRAGFYWPTMLEECFRYYKGCEACxKFGNIQLAPAAMLHSIVKPWPFRGWGLDFIGQIHPGHRF
VLVATDYFTKWTEAIPLKNMTHKEVINFVLEHIIHRFGIPQTLTSDQGASFMSHQFREFAESFRIKLLNSSPYYAQANGQ
TESSNKILIKLIKKKIEEHPRRWHEVLSEALWAHRISKHGATQVTPYELVYGQEAVLPVEINLQALRVARQNDLSAVDYS
NLMMDRIDEVPEERLKALREIEKEKLRVAKAYNKRVREKSFQIGDLVWKTILPLGTKDNKFGKWSPSWEGPYRVVEIVPG
NSYFVQSLQGEKLPKALNGKYLKKYYPSVWQTA
>RLG_scTat_5_1_pol#LTR/Gypsy 3280-6450  [Saccharum hybrid cultivar]
MPGIPREVAEHALEIRAGSKPVKQRLRRFDEEKRRVIGEEIHKLLEAGFIKEVHHPEWLANPVLVKKKSGKWRMCVDYTS
LNKACPKVPFPLPRIDQIVDSTAGCETLSFLDAYSGYHQIKMKESDQLATSFITPFGMYCYVTMPFGLRNAGATYQRCMQ
HVFGEHIGPTVEAYVDDIVVKTKQADNLVNDLDVAFKCLRAKNIKLNPEKCVFGVPRGMLLGFIMSRRGIEANPEKISAI
TKMGPIRDLKGVQRVTGCLAALSRFISRLGEKALPLYRLLKKSEHFSWTLEAEEALTKLKATLSNSPILVPPTPGEPLLL
YVAATSQVVSAVLVVERAEEDHALLVQRPVYFISEVLSETKVRYPQIQKLLYAVILTRRKLRHYFEGHPITVVSSFPLGE
IAQNREASGRIAKWAVELMGETLSYAPRKAIKSQVLADFLAEWTDTQLPPAQLQAELWTMYFDGSLMKTGAGAGLLFISP
LGVHMRYVIRLHFPASNNVAEYEALVTGLRIAIELGVRRLDVRGDSQLVIDQVMKSSSCRDPKMEAYCQEVRRLEDKFHG
LELNHIARRYNEAADELAKIASSRTTVPPDVFAKDLQRPSVDLGPDGGVGGTSLDPPPEAEAPSTGAEAMQVEGSTPPSD
LEPDWRAPYLNYLIQGDLPSSKTEARRIARRAKTFVIVGDARELYRRSPTGILQRCITNKEGRDLLSDLHSGACGHHAAP
RTLVGNAFRQGFYWPTAVSDAVQLVRSCKGCQYYARQTHLPAHALQTIPITWPFAVWGLDLVGPLKRTTGGFTHLLVAID
KFSKWIEARPITSIRSEQAVLFFTDIIHRFGVPNCIITDNGTQFTGKKFLDFCDHHHIRVLWSAVAHPKTNGQVERANGM
LLQGLKPRIFDKLSKHGKRWAAELPSVLWSLRTTPSRATGFTPFFLVYGSEAMLPTDIEYGSPRLKAYNERNNDATRQDA
LDQLEEARDVALLHSARYQQGLRRYHDRHIRRRDLNVGDLVLRRNQNTKGRHKLTPPWEGPYIIAEVLKPGTYKLSNEKG
EIFTNAWNIEQLRRFFP
>RLG_scTat_5_1_gag#LTR/Gypsy 61-3213  [Saccharum hybrid cultivar]
MADPERPIPLATVIWFGSLEFMSLGYGYDMVLLPPRHPTDEDYELSQPGGAIRRYRRSRQARAARRRRARRNHRLHLAEG
DGIPRSGTSQPGAGPDLLVEGLGRISLAEDNMPTENPAAPPPGATPLPRASFPAWAATSPSPFPFGLVSAAQAYASSMST
CLSAYEELPGHHLRSTLDLVASTPASDYLDSTETPETESRVTASPRHNFGGGSQRPCIPPSYYYFGAPDSDSADDTYDPT
RECFNVDVESASDSEEEELTGGGHTPPHVEHLADRDEAQLLADQGVQLEQIRELQEKLDEERQNLCLLQQTLERERAERA
PGGRARERARDVNRRIDEDRAVDPPVFARASQNVVAAAMLLRNMPEPSNPDARRARDEIRELLETAALQQAESSASRRRE
PASERLAEPSRQEREASVHPEPARRIRMAPAPEPVTHDHGPRDTRGNIVERRTRKHGDGVARGYHVHRGGRYDSSEDRSP
SPEPPGPRVFSKAIRETILPARFRPPTTLAKYNGETKPELWLADFRLACQLGGATNDRVIIRQLPLFLSDTARAWLEDLP
PQQIHDWDDLVRVFEGNFKGTYVRPGNSWDLRSCKQKPGESLRDYIRRFSRQRTELPNVTDSDVIMAFLSGTTCKELVRE
LGRHTPLTANGLMDIVTNFAAGEEAVGAIFGGEQDKGKQKTDDPASPTRGSKRNNRKKKKGQQGKLEAPADELVAATERK
KPRGPPGGGIFDKMLKEPCPYHKGPINHNLEDCHMLRKYFEGAGSKNTDKKEDPKGDDKDEGFPEIHDCFMIYGGPSTRL
SARQRKRERREIFSVQTAVPRFLDWSAVAITFDRDDHPDYVPSPGVYPLVVDPVIANTRLTKVLMDGGSSLNIIYSQTLD
LLGVKRARLQPSVGGFHGVVPGKRAEPLGRVDLPVCFGTPANFRKEILTFEVVGFRGTYHAILGRPCYAKFMAVPNYTYL
KLKMPGPNGVITVGPSYEHAYECDVECVEHGEAVLETAALVADLDGLANEIPDPKRHAGSFKPAEDVKLVPLDPADPNRK
ALNVSATLDPK
>RETROSOR1_SB_p2#LTR/Gypsy #ReverseORF 8400-9233 R) [Sorghum bicolor]
MAAALEERCSREVICRDEAIGALKKENETLEAEKARLSEEVKEFSSVRREVDSLKKERDDYKAGSEALRKEKEDAEASLA
VLRTSVAEAGRVRDVALQRAEKAEDIAERLRKELDAERTSAAELQTRIQKAEAEAAAIVGLYADSLAKFGGSTSAPPPGG
DVGASLAWLKSHIRMLPDFVGGAVDFGALAAVSSFARLLRRGGCSHAEGVAKEEFAAAEDVGEGTPSLRKSVRNFISSFW
IRFGRDEAKKMAEDRRAEVCSIRLFLFAFASLLCDVT
>NUSIF1_TM_p2#LTR/Gypsy #ReverseORF 5277-6551 R) [Triticum monococcum]
MAPRQPLAKAWYSPALDPSNVSKASFARLCQMATAQGVNGTEMFKAGSTTPEDRGSTFYPLFASSIVAGLLPPFSEFFFS
VLRHYNLQALHLHPNSVLLLAIFAYYCEAHVGVQPSVALLRHYFYLWITGSSISACAGFVAYSGTITISNPGKRIEGFRS
KWILADVGRIHPRLILPTEQPVSSSDWCRAELTDPRAKPVLEKMDADLRPANMTTAKLTGASLLKEFLEHQLAPLREYSP
PMWRPHPCPEAVDEEDVTAVLQSLVGGEVARPKGAPEPLFLCDNWKQVVKSMPVFNGDGLVPAVASEGPVDVPSGDSSDE
EEGEEERGEGPDSGATDGESRAPLPRRSPRTLRLSPSDDDDDVLGSGSSPPILKKDRTALISRGSVLTPGRTVDAPLASG
VDPSSWLLGFKLGRRLPEFTGEDP
>NUSIF1_TM_gag#LTR/Gypsy 2-1831 [Triticum monococcum]
MGEVLSFSFKLSGKFKPDLPPRYDGTTDPAEFLQLYELGIEAAGGDEKVMANWFPMALKEGARTWLLNLAPGTISSWDQM
RARFIANFQGTRDRPPAVSDMRRIKQQPGETLQKYIQRFNSARLKIPKVSEEAIISAFFDGVRDVKMKEELAMHEDLCTS
LELFNLVNKCARAEEGRLSLLGLPAANPEEKKPKAKDAKRKGAAVLAAEPYTKRGKDLPEPSRGSRYCMYHDLHTHNTNE
CQELRAVREGRIGRRPDRADRGYDRGGGRNPGRWEDRGPRQGWRDQPREDRWRDLPREEDWRDQPREDRPHGNAGLPPLP
PPPRRNEDRHQDKGAGGFQEPRAIACILGGAQAPASQRIFKQFTREVNAVLPKLEATRPLRWSCPITFSSADQLKCAATA
GVLPMLCSPVISNVLVTKTLIDGGAGLNVLSVETFNNLQVPYDQLQPTKPFSGITDGSTVPIGQVRLPVTFGARSNYRTE
LIDFDVAHIRLPYNAILGYPALAKFMTATHHGYNVLKMPGSGGVITVPCEEKDAVCSLERAYQAASLEDPDRGSRRLPET
TPKKKKTLSGSAPQGPRLPRGTLLPSHRKARPMPSSGRARGLSSGGPPT
>Ogre-PT3_gag#LTR/Gypsy 3130-6480 [Populus trichocarpa]
NIGPTSKVHNTRSRARMENEERAHLESHYQTELESVKNEVSRLTDLLEQLLRAKNGEGTSAQQPEGAPAAHIPQVSQNQG
ANSANEQHFVPITPIQPTHAPITVDLTAEGVPDNRSPSVMDQDKLFALEERLRAVEGNDWFDPIRAAEVCLVPNIVVPKD
FRIPEFIKYTGLECPNTHLRSYCNKMAEVIRDDKLLIYFFQDSLAGSALSWYMRLDSIRIKSWRDLVEAFLKQYKFNMEI
APDRTNLMAMEKRSQESVRAYAQRWRDEAMHVQPPLIETEMVSLFANTFKAPYYEHLMGSSSQHFYDAVRKAERIEQGIK
AGRIAMPVEKKGFIGRKREGDVNNLEGGYKGKRVDFHNPQVPTSQFSRINFNQPFSPNRTNNQSNYQNHYQRPHTKYTSE
QLPPLPMPLKDMYAKLLSIGQIAPIPTLPLQPPFPIWYKPELACEYHGGNLGHGIETCYAFKKRLLELIKMGWVSFEDKP
NVNSNPLPKHAPNSSGIGMIEVGNQCKVLKVSMKRLYDMLVQSRFLKTKVKSHLEGYDYCEYHGRDGHHIEDCIEFCEKI
AKMLKIGELRIEPIKSSGEVSMMEGQDEMTGVCRVQQTAYGPPRLILVKPSYTKGNHNAMPYNYGYATNVRAPLPSFQPE
ISGLTRSGRCFTPEELRKAKGKEVVDLDKALEVNKPVTEDESNEFLKLIKHSEYCIVDQLKKTPARISLMSLILSSEPHR
NALQKVLNEAYVPQDIEHKTMEHLVGRIHATNYLYFTADELDAEGTGHNKPLYITVRCKDCLIGKVLIDNGSALNVLPKH
MLEEMPIDESHIKPSTMMARAYDGSPRPIIGTLEVELYVGPQMFLVTLQVMDIHPSYSMLLGRPWIHAAGAVASSLHQCL
KYIMNGMLVTVKAEETISMTKNVAVPFIEAGDCKGNNIHAFEIVNTDWVPENTVLRRPRISEAARMASLCFLNSEIPFQY
NLIIGIPEGVNLEKMKSAAQRFGLGYQPNQEDYRWAAGWRRARRMARIKGRELEEEKLEIPPLSVSFPKAAYIMQHDKEA
ESLDQELSNMSINTLGENKMEGDDMKTVARKGDEALPQLTIYTIEEVSAKTFVRKLAQDEKFQNWVTQEAPVVFKM
>REALAA_pol#LTR/Gypsy 1870-5598  [Alternaria alternata]
MDRKTHSEWSQFQEKHMRTPPITVDLIINNVANAQALVDSGCLCYSLVNKKFAYRHRLERFQIPVRIIEGVNGKLSEINE
VARFSFKLHGHEETAYAYVMDLSFGEDIYLGRGWMNHNNVSVAPAKKSIFIHSTGVRVRSTEGISKQKIRQVNAAAFSAL
IHRHRRAPNSVQIFAASIADIDKALQPKKRVDVRALLPEQYQEYYGLFDPKAAEKLPPHRGPGVDHSIELELKDSQPPWG
PLYSMSRGELLVLRKELTSLLEKGFIRVSSSPAAAPVLFAKKPGGGLRLCIDYRALNAITKKDRYPLPLIRETLNNLSKA
KWFTKLDVIAAFHKIRVAEGDEWKTAFRTRFGLFEWLVTPFGMANSPSTFQRYINWTLREFLDDFCSAYLDDVLIYTDGS
LKQHQEHVRKVLRKLQDAGLQVDIKKCEFEVKSTKYLGFIIKAGKGISMDPAKVAAIREWEAPQTVKGVRSFLGFANFYR
KFIKNFSQLAAPLTRLTGDVSFRWGPEEQSAFDKLKEIFVSEPTLASFDPERETVLETDSSGFAVGGVLSQYGDDGVLRP
CAYFSRKNNAHECNYEIHDKELLAVVRCLEEWDSELRSVERFKVITDHKNLEYFMKPRMLNERQIRWSLLLGRYNMELLY
RPGKQNVRADALSRREQDLPVGADDERLQKRFVQILKPTNSYCEELEEEDLVGAILVMATRMTTVPPTKQGSVQPSTEET
TAEQNELEKLWQEAVSRDRVYQGAKKTIKAQERRFPLSLGLKCSTEDCSVEGNLLLYRGRKWVPDSEKLRTQIISGAHDS
LATGHPGREVTYKILARDYFWPGMTQTIRRYVRNCSTCGRSKSWREGKQGLLKPLPIPAQIWKEISMDFVEGLPESEGMT
NLMVITDRLSKGTIFVPLPNIKTDTVVQKFIERVVAYHWLPDAITSDRGRQFVSVLWTKLCELLKINRRLSTAYHPQTDG
ATERMNSVWETYIRSFTNWAQNDWALLCPMAQIAINGRTATSTSMSPFFLQHGYEVNPLQIEPEVGSRASNQTEGLSDVQ
KAQVIASKLQQAIELAQASMAESQQEQERQANKTRREAQNFRVGDKVWLKLDQQYSTGRSSKKLDWKNAKYTVIRVVDSH
SVELDTPPGPHPVFHVDRLKLASTDPLPSQDQDDSQPQPLQVDGEDEWEIEDIVAEEVRRRGRGRKLYYEVKWKGFHQTT
LEPAELLKDAEAVDRWEAFTEAERDGEGRLPEGFRRGDVVSP
>Ogre-VP1_orf1#LTR/Gypsy 890-2416 [Vicia pannonica]
MDLGRRNTKRYDFRIPEVGGLQELASLVKKPVDFRKRYGKLLSILNTSVNIGLLKTFIQFYDPVYHCFTFPDYLLVPTLD
EYANLLGIQVTDGVPFNGLEAIPKSRLIATITHLEKSEIDNNLTVKGNTLGLESDFLMKKAFKFAKSGNSEAFEAILALL
IYGLVLFPNIKGFVDVSAIRIFLIGNPVPTLLGDIYFSVHLRNRQGGGVIVCCAPLFYKWIISHLPKSPIFKENPNGWNW
SRRLMSLTHNDIHWYTLIYDGLETIESCGEFSNIPLIGTQGGISYNPILARRQLGLPHQKPVGLTVESYFYQEGIDPHGL
KARMVRAWHHIQRREGGRARNCVALELYTSWVEQRARDLQMPYAYEAPSLPAIPDWPDVPVETMEEYQETLSYIAQEKDL
WEDKFHKTVSENRKLKKQVEEHDQMLYFQDDWLMEKDEKIRRKDAAIRKYLKERREMFNGSTSTTPDLDWKSEVNKLEAE
KAEMKAYYEKEIMKHKRHKSVDCSSNEDA
>Gypsy-31_DWil#LTR/Gypsy 3779-7640 via tfasty with Gypsy65_AG, 2 frameshifts and 1 stopcodon. Upstream region contain inverse partial coding region for an env protein. [Drosophila willistoni]
MAEIKPFLCANIEKSLWRNELEKWLRSFNIYVDTEEISSVIKKRNKLLHLGGPQLQEVVYSLPGALVAYDATKENDEFTP
LVDKLNEYFSPQRNAVFERHMFRSMVPAKDDCFAEFLLRLRQQASKCSFGASKTEIEEICVADKIIDAWAKTALKKKLLA
ELKLEEIINTCTVEEQVNQQSEAMVIPSDADIVKKIAVQTKRNDRTNDVCGRCGAADHDERSMACPARNSKCNKCSRFGH
YARMCKIALKRRFGTPYDNQRKRPRTSQFQVRAIDEEETKCHSDNSWSNCFKITGEPEGEETVSCLVGRSQLQIIIDSGS
RYNLISLRDWLQLNSVNATVFNVRNNSSTQFGAYASDDVLRVTNAFEAPIRIQERPEMIATFYVIENGRQSLLGRDTAVQ
LNVLKIGLGVNKVDSYAHFPKWKASPVRLAIDHNVRPVQKPMRRFPTALEDRIAERISQAVQQDIIEPVHGPSSWISPVV
IAYKGSGEIRLCLDMRRANLALSRENYPLPTFDMFMTKLREARCFSRLDLKNAYHQLELDESSRQITTFITHKGLFRYKR
LFFGVNSASEIAQRRLEELLAGCPNALNYIDDVIVFGKNEEEHDKALTAVLKIFDTHNVVLDKQKGVYKTTKLKFLGHIL
SDHGIEADPEKVKVITDFRDPKTKEETRSFLGLVTYVGKFIPDLANTTELLRRLIKANTKFDWTNKEQQAFDTLKKQVVE
VTKLSYFNKNLRTCLIADASPVALGAVLVxVDDHNDHHIVSFASKSLTDVEKRYSQTEKESLALVWAVEKFYYYLAGLQF
DLITDHKPLESIFKPTSKPPARIERWLLRLQSYRFRVIYKAGKENIADSVSRLCQLTEAVAFDWQDEQIIFQIVAKGVSK
SLTISEIMEKSMQDEEIIDAMTYLSTNSWEANSSSPYYLFRWELSTVENVLLRGTKIVIPTILRSQVLELAHEGHPGESA
MKRRLRSKVWWPRIDREAEGFAKACRDCISVSLASKPAHMDRHAFPAGPWQCVASDLLGPLPSNDYVLVLIDYFSRYMKR
ISSKVLIEQMDEIFSRLFSLELQDFCRTNGITEITTPPYWPQANGEVENMNKSLVKRLKIAWSKVKDYKREIQNFVMMYN
VTPHGTTEAAPSELMFNRIIRDKIPDVRDVVGDVGESSERDLDCWNKQKGKKKADKGRGAKASDIQPGDKIVLKNVLCPH
KLTPTFDTTEYVVVNRKGNIVQVQGGGKTLTRDVSHLKKIPVTGTHEAATTTDSVQGPSTPRQTSQAPENEACAQDEGLK
LKLKNIGG
>Gypsy-30_AMi#LTR/Gypsy 176-5808 via tfasty with Gypsy-41_AMi, 3 frameshifts and 2 stopcodons. [Crocodylidae]
MAMAELLQWCMELQVSPGRVIVIXNIPKGLSAEAIRDLLRGSSRCLRLCQVRGVRPDGRGDHQMAVCELTTAVDALRVPR
MLEVTDEEVWAVTLVDGGPVPRPDSGGESEEPPSRGAEDPAPAAPGESGVGSRAPDPEWAKALGKALKEALQPSPESVAY
KRLRIFSGKDPLPPGEETFEAWHSHVTETLASWAVSEEEKRRRLLESLRDPAFEVVRMIKQENSNISVLQCLELLSSVFG
KSVQAEALFLEFNKTYQQKGETASAYILRLERVLQQLVAQGGLTREMAGKARLQQLRVGILYDEQLVRELNLTGRRENPP
TFGQLLREIREAESLQAVKASIKAVTPAPARGLAVAPCPPRALVVEMPMATDFDNDAPQPLAVLHQQAQVTRGNQPRASQ
GSLAIRSQWPRRPEGRGKFCYRCGEDGHFKRRVYKSGKPAPGMAATAGNKGGAGKRWRDPGKEPTRVSAPSGSDSPGTPA
RFPPGLVGPRAEVPVVIEGRRCIAVLDSGSQVTIIFQSFYDKFLKHLPLQPLTGLGLCGLSQEVYPYSGYVTAQLEFPKE
VAGVCKSVAVAALVCPDPKWMRGANIIVGTNSSLFQVLARYCRQKAGKQYLTALPMHALCAGAYQRIETSAGPETDVRLG
ALYYAGETPEKVPARGSQFLLTAPKGIARTHHKKLAVVEPPKNSGPLRQMLVPSGVVDIGGQAPSSVTVLVVNPTGKDIT
VKPGQRVAELVEAEVAVSPTQSSQTQIVDPAKFNFGSSPVPAAWKTRLQEKLSARGNVFSVHEWDVGLAKGVEHSIRLQD
TRPFRERSRRIALSEMEDVRRHLQELLDHGIISETRSPYASPIVVVRKKSGKIRMCIDYRTLNSRTTVDQYTVPRVQDAL
DCLLGSQWFSVLDLRSGYYQIPLAQEDKEKTAFICPLGFYQFERMPQGISGAPATFQRLMEKVVGDMNMTQVLVYLDDLI
VFGKTLEEHEERLLKVLDRLQAAGLKLALDKCQFCQTSVKYVGHIVSQEGVSTDPDKINAVATWPRPRNFQELKRFLGFA
GYYRRFVQNYARLAKPLNDLTRGYQARRSQIRSKGAPSKARAGRPLGLQDPLESFGPxWDENCERAFRALIRSLTRAPVL
VYADPQWPFVLHTDASLEGLGAVLYQEHQGKLKPVAFASRGLVDSETRYPTHKLEFLALKWAVTDKFKDYLYGTQFEVWT
DNNPLTYVLTSAKLDATGHRWVAALADYRFSLHYRAGRKNIDADALSxQPYKQEREIATVDEVQSICGLEERRTSEAESL
PDCAAEVLGLPPDSVPRATVGYVTLDQSPLPRLNAAGWRRAQEADPDIKEILEKKKKGDLSKEFKPKTLGGQHLLREWPR
LRVVEGVLYRMVTAPDGGTHKQLVLPQEYRTLALRALHDDLGHLGVERTLSLVRDQFYWPGMARDVRKKCETCARCVQRK
TLPTRTAYLHTISSSKPLELVCIDFLTIETDCKNISNVLVVTDHFTRYAQAYPTRDQRATTVAKVLWEKYFVVYGLPERI
HSDQGRDFESHLLREIFQMAGIRKSRTTPYHPQGDPQPERFNRTLLNMLGTLRNEQKDRWSQHLAFLVHAYNATRNDATG
ASPYSLMFGREPRLPIDLCFGVAKDQDESESYGQYAQKLRERLRRAYRLAVEAARRNQHRHKRRYDPRVRQQGLAGGDRV
LLRNLGVIGKHKIADRWRPAPYIVERQLGDLPVYKIRPESGRGPGKTVHRNLLLPVGELVGPPLTREGGHESPRRSTTWR
RIRCAKQEGHELTGHWHEPNSESEEDYSEGLDLGTGVAWHHLEPEDPVDPSVGPIPGGSPQPGESSSPVQNTTGVSSNPA
AGSTGGNRRAILTGTRSWSPHVVRVGVLMAVKKLAPRR
>Gypsy-32_BG_gag#LTR/Gypsy 183-1502 [Blumeria graminis]
MNTFRVPSPADSIQSIQPTHLVRSSSSTSSEEYKSFRSSQSTHSKEETQDIQMSNATNNSGSNQSTSTPVLLTQEQLNQL
LSLISVSNSHNEPAAPRSPPSGKKKASCWPEWDGTKESYDMYMMQLTNKIESDWDLLGGHKSVCMDMINTLPKNMRGRVS
HWASTGGPKSDWNYETFISHFNDNFEDKTSTRAAGEKLSRMRQGQHQTFASYLNDFEYMLALAKGVHWEGRIKIKDLSLG
LNDRLTDLLITVTLSDENYTLFVKEVRTIAGRLESRENYVPKIGPRYTKTWYISRLGNAPSNSGNSTGHVQRAFTSMHQE
VTPPYHDADGDTQMSGVNGISTSALAAIINAVNSQTQGRNKGANKKPPAPWRVREEYTALRAAGKCTRCAQKGHWHKNCP
NFTWPVRPAAVNAASTRDNEEKHISGDFEEDCNSVHSGNE
>Gypsy-34_DWil_pol#LTR/Gypsy 2375-5577 via tfasty with Gypsy6_Dya_pol, 1 frameshift. [Drosophila willistoni]
PYHQRLQNYLAIRDKIFAQEVATCQFIRSHSSERLRRFWKKVKDVQKRIIASMINEAADRPYAPVKFLEFSELGLLDTGA
NISCIGSDLAAKEWTKYPGFSTIVSSVATADGKRHPVTGIIRTEVQYESKRKPLSLFIIPSLAKRVILGIDFWKSFELCP
EFSSRCKTSILDKNIHSIDDEKKCLLNPEQEKRLNDVIQLFPDFKQQGLGRTPLIVHDIEIKEATPIKQRFYPVSPAVEK
LMYKEIDRMLEMGVIERANSPWSSPMRLVIKPGKVRLCLDARKINEVTKKDAYPLQSIDGIFARLPKANFITKIDLKDAY
WQIALSEKSKPITAFTIPGRPLYQFTVMPFGLCNASQTMARLIDDLIPADLKYCVFGYLDDLCVVSEDFDTHLEILIRMS
QKFRKANLTLNIEKTKFCVTEVPYLGYIIGRGGISTDPAKIEAIKTWPIPKTIKETRGFLGVVGWYRRFIDNFSDITFPI
TQLLTKKKKFLWTQEAQIAFEKLKEKLTSAPILINPDFNKKFFVHCDASNYGIGAMLVQLDEEGAEKPIAFMSKKLTTAQ
RNYSVTERECLAALEAIEKFRCYLELQEFEVITDHASLVWLMRQSDLKGRLARWAMKLQGYKFEVSHRRGQDNVVPDALS
RMFSEDLCALEELRPLVDLNSPSFNDEEYQQLRQKIEKEQERYPDLKIIDQFVYIRTEHDDGTESSQVNIWKLWIPQSLS
KEIIKRAHEDTISAHGGMAKTLELIRRTFFWPGMVVQVRDYIRNCETCKSTKAPNQILKPPMGKPAVSERPFQRLYIDLL
GTYPRSKRGHIGLLIVVDHLSKYHWLQPLKVFKSNVIQEYLQDNIFFRYGVPEILVSDNGSQFKASELNAWLTTLGIKHI
YTAVYSPQSNASERVNRSIIAAIRAYLKEDQREWDLHIPAISCALRNSYHQSIGCSPFHALFGFDMATHGSQYTLLEKIN
MLNESNNVLRKDDQLALRRNFLKKNIAQAAEQNAKVYNLRTKEVNFKVGQEVFRRNFGQSNFQKCVSAKLNLLWLKSRVR
ERLGNCYYVLEDLNGKLIGTYHAKDIRQ
>Gypsy-33_DAn_gag#LTR/Gypsy 1418-2755  [Drosophila ananassae]
MDSSILEAEGPNSSKCVLCDRTLSSAPLAKASCGHEFHKTCLQAHAKSKGSCPKCKTAKVPMSSQPQATQPIAPEPAVNM
AQTIEAVVSQQLRGLQNELLTQLADQMRQLIEVNVAAHLQPNRNSEFAQNPDPRSVSFRQPDEGPSMSRPMSAFSNSDLA
NRPDKVGHIITSWKLRFNGCPEGLSIDNFLYRVEALTHQTLEGNFSVLCSNASLLFDGKAREFYWRFHRTADHLRWDELT
KALRKQFRDTRTDVDLREAIRGRKQKERENFDSFYDGVVQLTDCLETPMTEKELIEILRRNLRPEIRHELLNLSIDSVQR
LRDVCRRRESFLEDVKRSYGYQRPAPFRKQVAELVEDMEPDDATEFSAAEIIDEIDALALVCWNCRKEGHRYHDCEAKRK
IFCYGCGTPNTYKPSCSKCQKNGKVNTRPNQQSCVPRRNFENQEKH
>Gypsy-28_DR#LTR/Gypsy 18-4109 [Danio rerio]
MDPASAAEIQEVLSRSVARMDHQDQQMKMTSQAIQALVNQVSELTTQVQRLSSGLSAGSSLPAPSVDPPASPLVNETPRT
TEPRLPPPQPYAGEPHLCRAFIAKCSLYISLQPSSFPTEESKVAFLINLLTGKAALWGTTAWEKKLPCCLSFKSFSEELK
TVFDQAASGREASRRLAELRQEDHSVADYSIDFRTLAAECGWNSEAQWDMFFHGLADHIKDEIYALELPKTLDGLISLAI
RVDNRLQRRGVHKEFRPQACFPEATTPDPEPEPMQVGRFRLSSEERRRRRTGGLCMYCGVGGHYAAVCPVKNKPSTGKSF
LVGEILTGKDTSGSTFLPIKLGVNSNFHSCDALIDSGAEGSFIDSDLVNKLKIPCFPLSSPIAVHALSGLPLPTITHITA
PIRLITSGNHTETISFFLTKTVKNPVILGHPWLVLHKPHINWGHNTVFSWSESCHKSCLLSACSTVSCSVFQEEQVDLSN
VPREYHDLKRVFSKSRAASLPPHRPYDCAIDLLPGTSPPKGKLYSLSVPEREAMEKYISDSLAAKIIRPSSSPAGAGFFF
VKKKDGSLRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVL
PFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHI
VSVEGMRMDPEKIQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLATPLTSLTSSKTPFRWSSAAEAAFSKLKGCFV
SAPILIAPDPSRQFVVEVDASEVGVGAILSQRSASDGKVHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGS
GVPFIVWTDHKNLEYIRSAKRLNSRQARWALFFGRFNFTISYRPGSKNIKPDALSRLFDPSDRKSSSDSVLPQNIVVANI
SWEIESRVRAALDGVTPPIGCPPSCLFVPEGLRSDVVRWGHSSKVACHPGVSRTLFVIKQRFWWPAMARDVRDFVLACSV
CAVSKSSNRPPAGLLQPLSVPSRPWSHISLDFVTGLPSSNGNTVVLTVVDRFSKAAHFISLPKLPSARETAVAVIDHVFR
IHGLPTDVVSDRGPQFVSKFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLRCLVSQNPSSWSQQLSWVEYAHN
SLPVSATGLSPFQCSLGYQPPVFPSLESEVAVPSVHAFVQRCRRTWNRARQTLLQVGKRTKAKADRHRSKPPVYVVGQKV
WLSTKNIPLRTVCNKLAPKFIGPFIVTKIINPVAIRLKLPPAYRRIHPVFHVSKVKPVFHTAINPHTPVPPPAASRRWGD
CLFG
>Gypsy-27_AMi#LTR/Gypsy 23-4210[Crocodylidae]
MENPDLAAYANIQPSAMAPVDILGQNLQALTQILDSQQQMLDHQQDWLQHSLVSFKMPKMTRDDDPEAYIEAFECHALMT
GLNKGYWASQLGALVVGKAQAAYRALSRDDARDYERVKEAILYRLEINPEHYRRLFRAKKGPDERRPRVLLQLLRDLLDK
WVSPAGPDREALADQIILEQFQNDLEERTQRWVRQHSPRTCEEALKLAEAFTASEVSYPRERRNPGSVAVPPKEPERRRP
PSRGATRDTVCFRCGQNGHFSRECPSQSTERWIPADRSRAPTDRRRGPEAGEPMDCSYAVGEENATWSHPIVKAWVDGRP
VQATLDSGCAQSMVRSDVVRRKADGRPPPPVKVACLHGETKQIEWQWIRLRVMEHQGELLVGVVPQLACEMLLGRDWTPV
YDILDRVRDAERARKKIWDHEGWLGEMEEDRESADEAEGLDLSDFTSSLQFREAQEEDQELGTLREQAQDSGDVSASLPE
GLPRFEVRNHLLYRIQGHRREGTADVQLVVPARFRQIIWRLAHASPVGGHLGWDKTLAKVSRWFFWPGMGEEVARRCAAC
PECQKTRTERPARAPLQPMPIIDTPFSRIALDVVGPLPRSSSGHQYILVMVDYATRYPEAIPLRAVTAPRVAEELMKWIA
RMGVPQEILTDQGRNFMSGVLRVVCRTLQIKQLRTSVYHPQTNGLVERLNGTIKRILRRCIQGDPRKWDLLLPLVLFTLR
DTPQDSTKFSPFELVLGHRPRGLLQVLREEWERDGGPAREPTTYRREFQQRIRVARDLAHENLREAQARQKEKYDGRAKE
RVFEPGQRVLVLLPTSTSKFLTQWQGPFEILRRVGPVDYEVHRPGHLREKQIFHVNLLREWQEPEGWVAFSEADNEDLGP
QGLRRGTVPSEEGALVRIGEELSVFQRKETLDLIEEFREVFRKEPGWVRNTVHTIKTPPGAIVRERWRPIPHHLLKAVRE
EVDSMLKQGVIRPSRSPWRSPLVPVHKPDGSLRLCIDYRRLNALAVFDAFPMPQVAELIERIGNAQYISTLDLAKGYWQI
PVAQEDRPKTAFGTPWGLYEFVRMPFGLHGAAATFQRLMDRILAPHAEYAAAYIDDIVIYSQTWAQHKRALRAILSELKH
AGLTANPQKCALAQKETKYLGFLVGRGTIRPLADKVEIIRNFTAPQNCRQLWSFLGLTNYYRRFVPHFSELATPLTEALK
GRKTGIVRWTEEMTQSFERLKRALCEDVIIHTPDFKKPFILQTDASETAVGAVLTQKEGDTERPVAYASRKLLPAEKRYA
TIERECLAIRWAVDHFRYYLMGREFKLVTDHAPLRWLSTAKTDNAQITRWALALQPYKFQIIHRPGKNNTVADFLSRCEG
EDQAEDVENQTKGLTSPPGTTQGKDTRVPQGILRGG
>Gypsy-26_DYa_gag#LTR/Gypsy 870-2114  [Drosophila yakuba]
MGKSWLYSLKRDDFPAIASALGIKLEGLVEDMRKTLSEFIQQTTDEPETVAILEALEREYARRPAPEVKVTGVEGLMRSL
DVHSMMEASGSRPERQETGSERRESSRERRERRESSRDRRDIARVAPPDYAKVAKQVREWSFRYDGHDKPLEFLEQVEWS
AMTYGLDINQIPRAMPELLKGRALKWFIANNRFWETWAEFIHSFQEFFLPRGFMTKLADQVRQRKQRHGECFKDYMVDMQ
TLMRPLGMSQKETLERIRENSTPALRMFVRPYECRHLDALMALADEFEELDSQRERFESERTHRARHQRDFPRGEQHAVC
RRCQEEPTGPSRHETNGRGPDPVRRGFVLNPAQACHRCGSQDHWMRECRNRPITFCWTCGRIGPKTAECCPRSGNATRPQ
PQRGNQGSQGAAPQN
>Gypsy-27_DWil_gag#LTR/Gypsy 307-1079 via tfasty with Gypsy4_gag, 1 frameshift and 2 stopcodons. (fragment) [Drosophila willistoni]
RNKIRGAANHTFASFDTVFNFRAIIARLDFTYADQTPRGVIQHKLATVRQGDRTLLEYYDEVERTLSLLTNKNVMSNEEA
AAAILNQRTREEALEAFISGLKKSLRLAAFPSRPKDLPTALALAQAAETREDRSVLAANYAKTMGDKNQKFSTxKSQDNR
QSGFWSSKSQSAHQGNSPHYQNRKPxQNSSAKQRLYNKETTHQAPEPMDIDPSSSRLRQLTAYRSRADSFRSGYQSGKLK
NSSERISGQGAQRINLIK
>Gypsy-28_BG_gag#LTR/Gypsy 66-1778 [Blumeria graminis]
MVGLTNLELESKLKKATADQTAFQEDTTKRFQKMGKDLDKLAERAERTENSIQELTDKSKLTFSELLHRADKTDDALSHI
LQQLSVIANAKTSENPATSSLRPTVTSTQEAPPLDKGKQRRQVSTSNQEASASLVAVPKQEPPIPKVSGEFPTSMQTESR
RYDNSSSTQIQFFNAPPTTANNKFLADGTINLYQSVNPQTSGLSDQEMRVKRYFPDFFTRKEAENPNGPLREATERNKAV
FPNDWKLLFANEDTLGILYLMQVGMVQSMLPYSAWPMRVASVMDHNFITARRAIANGSLDWASTVECILKVLHNNNALSS
PLTTFAKLTVNNSETTLDFARRLRKAFFFLPTDMVVGPQARDILSQHVRQFLPRTWSTISSRAPSLSNEELADHIVQSTE
AIARWPFEDTNFQRRPSLTNPAVDSSPPALGQTIMDPRLQGNNVFPAYSTFDEGGEYAVNPQHGNCYKCGKPGHWSKDCR
SNPPPKNNRIQSNLGRFPARSNFSDDLKKRYAAIKKKGFKRFSPNQKSFVVEPMTPDDGHQRSPADTIEHDNVDQELEDL
LTQVLAEEELE
>Gypsy-28_AMi#LTR/Gypsy 72-4187 via tfasty with GypsyDR1, 6 frameshifts and 2 stopcodons. [Crocodylidae]
MQAPAVAHAELLTQAIQAIGQVLEIQQLQGAHQQEWMQHNAALFKMPRMTQDDDPEAYIEAFERTALQTGLDRTQWAHQL
GALVVDQAQAAYWALSREDACNYDTVKAAILYRLEISPESHRQAFRARKSKEVKRPRSLLQYLRDTLNKWLPVGRFDRDG
VIDQVLLEQFLWDLEEDTQVWVRRHQPRTSEEALRLAEAFASSENERGWGRGLRPPTGSTTREEERRIGPQKGMTRGVVC
YRCGWTGHIARECRLGFSELGRGLATSTPPRERAREADRGEPMDCSFGTTSQEGGWDRPVVTAWIGDRAVRATLDTGCSQ
SLLRADLAPRTGVREAGPLVMTCILGGEMRFRSCYLPLRVMEFRWxARVGLAPALACEMILGREWGPFYTVLERVRVTEE
ERKRLRRGEGWAGETASPQDEPVRDSIDMEQVASAAQFRRAQREDPELQRLVTEDPGEGTSRSHPDFEVMGGLLYWVQRG
QEGMAERWQLVVPSPLRRANLELAHDSPLGSHLGRTKTRARLVRDFFWPRLQEDVERWGAACPECQRAQEWRPQRAPLQP
MPIIETPFSRVALDIVGPLPKSHGGYQYVLVLVDYATRFPDAVPLRSITATRVAEELLKWITRVGIPREILTDQGTNFMS
GVMKALCSTLGITHLKTSVYHPQTNGLVERLNGTIKRMLRHCAQEDPRRWDTILTPLLFALRDAPQESTQFSPFQLVYGH
SPRGLLQIIREEWERPVGPGMVAERYxQELQDRINKAQRIACQNLRVTQEQQETQYNRRTKPRTFQPGDMVLVSLPASTS
KHLAMWQGPFKVTRQVGPVDYEVLKTGHRHERQIYHVNLLKEWRAHRAGCATRGGRGGAGTPLPELGGSTQRGQVQLGED
LNAEQWRELEGMIETFRDVFQETPGRARGIEHEIRTPPGALVRERWRPIPHNYRQEVRQEIEKMRKQGIIRPFRSPWRSP
IVPVAKPDGSLRLCIDFRKLNALATFDAFPMPHIAHLVERIGEARYISTIDLAKGYWQIPMRPADCAKTAFGTPWGLFEF
VRMPFGLNGAAATFQRLMDSLLAPHAAYTAAYIDDIIIFTSDWPQHLDALRRVLGELKAARMTANPKKCKLAGKETKYLG
FCVGRGTIRPLADKVEAIRRFQEPRNCRQLRSFLGLINYYRRFIPHFAELAAPLTDALRGRASGTLRWTSEMTKSFEDLK
EAMCHDVVVHTPDFSAPFILQTDASGSALGAVLLQRWGEDERLVTFASRKLSQAETRYATIERECLAIRWVIEYFKYYLM
GWEFLVVTDHAPLQWLTKTQIENTRITHWALALQPFKFMVVHRPSKDNLVADFLSRYISSEDPAEEAHQAHEREHQATRD
GPSKMSRCHKAA
>Gypsy-35_BG_gag#LTR/Gypsy 89-1363 [Blumeria graminis]
MRIGVPGSDSSSSTDSADDSFFSASELNDLQYTNVETHMPSSGQHEGDLTMEGSTVTDPWAEISESERQEMLRLWKEARV
RESAQDPASTKGKGAPMLSTGGSQIISMPRAVLPKWNGRQEDFEFYIQRMMVRIEREAALGIDASTICLDIIDTLPEDKQ
PRVAAWFKDAVDNKQFDWRDFINHLCLQFQDNQACQAAVEMVQRMEQGYNQLFQDFLKDFEYRIALCEDLFTVSGKTIQL
NLSLNVRLRRALVSVDLPPLINYKLWVTKVSEVAAKLEALAEYRSKNATRTETQLGTPKSGSAQKFSEETKAEVDEQGDT
VMTGTNALLAAALHELKSLRKNSKQRGRADKDTSSNDDRPRAPWRSKEAFNKLLIKGVCVRCEKMGHMGRRCPKYRPAKR
PGAGVISAELDQEDFESCVSGNEEP
>Gypsy-47_DWil_pol#LTR/Gypsy 2337-5501  [Drosophila willistoni]
MHLREFKSPLCANTKKMRGIKRLIQYRKKHKLEKTAVLDSMIDDSLDWRPYADVNLFGRELKGLMDTGASISCVGGNLAA
ELVNELLPLKTVKTMVHTADGQKQAILGKTLTSVSFQGIEKPITLYVVPSLAQNLYLGIDFWRAFNLLPAFLAHKGKEPT
VACINLDSELNVSLSESQKKHLLKTIQLFPSFEAKGLGKTSWLSHEIDVGDAKAIKQRHYAVSPAIEKLMYQEIDRMLAL
GVIEESNSPWSSPVVLVRKPGKVRLCIDSRKLNEVTIKNAYPMPLIDGILSRLPKAEFISSIDLKDAYWQIPLAASDREK
TAFTIPGRPLYQFTVMPFGLSNAPQTMSKLMDRVIPPSLRNEIFIYLDDLLVVSESFERHISVLSELANRLILAGLTINV
RKSSFCLKEVKYLGHVIGNGTIRTDPDKVSAIQEFPVPKSVKQVRRFLGLTGWYHKFIKNYAGIAAPISDALKQKRKFIW
SEEAQKSFDRLKYSLCTAPVLHSPNFNAPFSIHCDASHTGVGGVLMQIDSEENEVPIAFMSRKLNQCQRAYSVTEKECLA
AVLCVKKFRAYIEGQEFSIITDHASLKWLMTQVDLSSRLARWALKLQGFSFKIMHRKGSQNIVPDALSRVHTDDISAITL
ANGFDLSSDAFDADEYKDLKAKIQLKQSQLPDVKVIDKYIYRRTEHASGDRVADDLCWKLWIPKSLVLDVIQQNHEDHLA
AHSGINKTLERIRRYFYWPNLIGDVKEFIANCSVCKTTKHSNTYLRPPMAKSEQTYRVFQKLYIDFLGPYPRSKLGNIGI
FVVLDHFTKFPFLKAVRKFTADAVITYLETELFHCFGIPEVVVSDNGPQFKSHQFKALLEKYKVRHSFTAAYAPQANASE
RVNRSVLAAIKSYVNKDQTDWDENLSSVACALRSSWHSAINNSPYRVCFGQQMITNGATYPLLRSLNLLEDRSVQFDRTD
SLEIIRQTAIKAVAKQHERNEKTYNLRSRDVSFQPGQEVYRRNFQLSNFAKGFSAKLAPTFIKARVRQRIGTSYYELEDM
QGRMIGKFHAKDIKQ
>Gypsy-39_BG_gag#LTR/Gypsy 158-1807 [Blumeria graminis]
MASNQDASIMNQLLDSFRGSWPNLASAIGDYTFPPDSNPTPLLTTIASTSDSPEKIMFCSLLKCFDLKFGILNRQISHQS
ATISEFESNFKSMKGHISELDERLTLAHQDTLKAREIIETKNQQVESRLNDINTLNMRISKLNAHISSGNDEIFKLRTQI
QNNIANSNIVSNEQAIRTPRRTTTDHDKFTGNHNNMEKRQLAYERWKTQVQQTIIVDKPCFPGEFEKISYITGQLTDKAW
DSVQDGVQMMNKNPHHPAKWAWETSEELWSVLDGRYMLLDVTQTAKNKLDTLFQEKRAYGDFKVDFDHFAEKAKYDDRTK
VDMLRKRLNIRITNVIDNQVNLPEDDDFNGWSQMINRIARNLGQQEHIAKIQQTSSYSPRQDLRHSQDAIDAGDPMDLGR
VKLTESDRKHRKDNHLCLACGQKGHFAKDHHRKIDPIPMPTRSINQPSVSGGNGRLQSRAYVPPISSQQKYPPHQNMQPW
LTPHMYYNQAQYIPQHYSQGFQSDYLRPTAPARLRALDNTGSITDTYPEDEDSKDVVRAVGNQLKDKPLP
>Gypsy-51_BG_gag#LTR/Gypsy 149-1483 [Blumeria graminis]
MPGDWPKEDFTTSVYATRAPGEEEDQTTKIDVPWYQQVTFEMLDKDYIKRNERRAAEVKKETDQERHEYTLKTMCTALAD
RANNISNYLRDTLDQKAEAEKLAQSWAEEAERWKGAFAEVTLDLKAKDKGKQKEESKSVRGSATYNTFEKDAAGCEASET
PPSNKEVRDPQAKRLRYRQKIENPPTFTGSHNPTFENWEHAVKRKLNGDSIYFDDENHKINYLLGFIGGDAQEFIKPYLE
PESVNHITVAMSIVEVMRGAYGKTRGQKRSEARANFKKLRQGDDSFSAFFTKFLTFASQLQLRDEDRMDELREKMSPKLQ
NVIAGLDFESTLEMSQHCLKIEPHLKLARKSEDQAARYQQRKDRYKKPLLPPEHTRTAPPRASGPPKPKVLARNAGVCFH
CHKTGHYANACPTVKVNEVDAKKKEEAEVFGSEFTMSSDEGKDCL
>Gypsy-53_NV_pol#LTR/Gypsy 1146-5112 via tfasty with Tngr2_pol, 2 frameshifts. [Nematostella vectensis]
QRPAAVSHAAGANHGGSISTQEPEEGVKLVGTTPTAVARIGGVPVRGLVDTGSMVTLVTETFFRDQLQSALRGCPEGLNI
PYVGYVCTTVEMGGVSIPSCGIFIKRDIPATSGMKRQVPGIFGANLLSQVPEFKKLMTEDKKRTGFAKVAGFCNVWVPPF
SEADVLVTGPQWGCSAVVEPLSVPICGNLSVASTLVNTSRACFVVKVANQTAKDIWLKPRTRLGIVRECDVLQQGEPLLF
FQESNSVTVSCGLSADPRKPPKREADDMARWQGSQELPTGITVECFPGTEQQRETALQIFRNYRDVFAKDSDDMGCTSTT
YHRIHTEDDVPVMERHRRIPPNQYQEVKQHLQGLLRRQVYASPIVLVRKKSGTIRLCVDYRRINSKTKRDAYPLPRIEES
LDALRGARFFSTIDLASAYNQVEVDPRDRHKTAFTTPMGLFEYNRMPFGLQNAPATFQRLMQGVFREELLQSMMVYLDDI
IVFAESIDEHLRRLEVVFRKPREHGLKIEPSKCQFFRGQVPYLGHIVSADGVATDPEKTKAVSAWPVPSTVRDLRSFLGF
ASYYRRFVPKFAQVAGPLHRVVTQLGSGHSQKSTRKVIGELWTPECQAAFDQLRTLLTTAPVLAYPDYNQPFIVETDASN
EGLGAVLSQKQPDGGTRVIAYASRGLRGAERNMENYSSRKLELLALKWAISEKFREYLLGSEFVVYTDNNPLTYIQTKCK
LKAIEQRWAAELANFDFSIKYKPGRHNVNADALSRIHRYEETVAAISAEVTYEPSTTHLPEEVREQLVTAAAVMTELQPH
LLGESQATTLPSVTQGEVAQRQRDDPVISRLLHFRACGRKPNKQEMSKETKHVQRLMQQWSRVSEKDGVLYRRTGDSQGD
ELDLLIVPKSLRSQVLKGVHNQCGHQGTERTELLLRKRCWWPGLGMDVKRWISECERCVIARGPQVPVKTPLQSIIATRP
LEVLAMDFTVLEPSSDGRENVLVLTDVFTKFTLAIPTRDQKASTVVKALVKEWFLVYGVPHRIHSDQGRSFEAEVVQELC
QLYGVKKSRTTPYHPQGNGQCERFNRTLHDLLRTLPADKKRRWPEHLKELCYGYNATPHGTTGYSPFYLMFGRDTRLPVD
ILLPDSAAHKDDQLWITEHQKRLRDAHAAAGERLREAARIKSSRHQRGRSYAEPIPLGERVFKRNRGVRGRNKIQDKWEK
TVFKVLDRKDNTYIIQPADGSGEEKTVNRGELQVCPKAILETQHQRRQQRATAEGGESSDEEEDGSPELTIELPREIPSY
DSHESSDSSSEEEATAPPPPRRSTRSTAGKHSNRFNLPMPAV
>Gypsy-52_DWil_gag#LTR/Gypsy 1994-3493  [Drosophila willistoni]
MVLTRSEENLAHEISDALCSICQKAVWATQELVVKTSCHHLFHKNCISEWIDQFNVCQVCNASIRRADLEVQNVPFAEIE
SERPVNIGAITTGAVPKGPNTRSRRNFSGGEQANQATANIEMSAGDRPTTIRKQRGRPQGNGSNIPRRSLDASRRPARAS
IEIDYDRISNQIESIIDRRIGQMGITQQHVNASAQNQSIPRSSSTVRPSRTGHNPDKITQLIHSWNVKFDGSSKGVTVEE
FLYRIKTLTEDCLDQDFDAVCKNLHILLVGKAKEWYWRYRRDVVNLEWSEFCAAMKYQYKDYRSDVDILEDIRGRKQKVG
ETFENFYDEIMTQMSRMSKSIDEEQLIQLLTRNLLPDIRHELLYIPILSIPHLRKLVQMRENLLGDVVSRRANKTSANFQ
YAKRNIAEVEEPEKFELSEKMDLNVYNVEAVQAPVKVFRCWNCDAEGHGWDNCLEPRTIFCYGCGSKNVYKPQCKNCIAK
KAENLVKGPSVKARMAPKNL
>Gypsy-38_BG_gag#LTR/Gypsy 121-1278 [Blumeria graminis]
MDKEDLKGFAETYPLTNNLATNSSFRITAESDXXKLHNELRDLLIKIKSIVDQLDNLQPVANEVEVMRAKLSEREVELHD
SHEQFRSEKSAWTDRENILLRRLLKSARSHLSPEHPNPTPFDGSKPNELNAFITDLKIKLRQNNDWWPDEQARMGYVMAC
LKGKARENVNAGIDTEGLITFKSTDEIIELLRSAFGDLDEKGTAQKSLLRLKQGDRPLANFLPEWQALAGRSEFNEAALI
ATLRESLHRDILNRLTFEKTGTIPTTLPAFISLIRSFDNILRSVDKAHTPASTLSPVYTSAHREGDPMDLSVGTIMKWTA
KDVADKRRPRTFEEREARRAYNRLHNLCGYCSNPGHSTSVCPINPYIKNKQPGNLIGTEEKVPGNA
>Gypsy-35_DWil_pol#LTR/Gypsy 1864-5142 via tfasty with Gypsy3_Dpse_pol, 2 frameshifts. [Drosophila willistoni]
MRTTRSSVTQMPGGKRDAEQNEGGVALRAAEERVKTSKNCMLEIDIVNRLRPIYNKLEYKQSNLPISAYSHQQFSEKRNP
LGLVEETNRKKAMSNRVKRVREQYRQRRTKRQEVCSALEAVSRQKENRAFATVKMQMFHVEGLLDTGASVSFLGDGCEDL
VNKLELKRKTYYSKVQTAGGVNHAIKGKVDVHMTYRGRTQEMTLYLCPSLRQRLYLGIDFWRKFELAPDLLGVEELSIED
EEFNSKKEPVEPHVLNETQQRSWPVSPPKQKLLFQEVDEMLKLGVIELSESPWNNRVTLVQKPGKNLRLCLDVRKLNKVT
IKDAYPLQNIESILSRVEDTIFISSVDLRHAFWQVELEVESRKYTAFTIPGRPLYQFRRMPFGLCNAAQRLCRLMDKVIP
QGLRSHVFVYLDDLLIISRTFEENIEHLKAVAECLKKANLTIGLKKSKFCFRFLKYLGFVIGDGKLKTDPDKVKAITEIP
LPNTVRQLRSFLGTAGWYRRFVQGFAEKAAPLTDCLKSKGKFKLTKEATESFNLLKQALTNAPVLVHPDFSRRFFIQCDA
SHVGLGAALFQQDDEGNERPISFFSQKLRGAQLNYTVTEKECLAAVKAIERFRPYVELMPFTVITDHSSLQWLMTLKDLN
GRLARWSLALQSYDFVIEHKKGKDNVVADMLSRTAVIEELNFFDFETTEFESEEYRQRYKCVLSNPDKLPDLHAEDGLVL
KRMRITDNEIADVAWKLWIPEALTHTLIQQAHDSEEAMHGGVARTLGRLKQFYYWPRMAVQVKNYIAACDTCKEAKHTTQ
TTRPTMGAEVCTSRPIQKLYLDFLGKYPRSRKGNAYILIVLDHFTKFVWLKTMPKATSAATIKFLREELFNTFGVPEIVH
TDNGKQFTSKEFEEMVSRFGITHTRTAAYSPQANASERVNQSILAAIRTHVGEDHTHWDVKIPEIQAALRSAVHSTIGTS
PYYAMFGQHMFRNGGDYRLARKLDADAAVEIKQLLREDQLQILQEKIVARAHQAFEKSKKRYNLKAREIQYRPGQEVWKR
NFVLSDFKRNINAKFCKRYSRCRIMRPVGKNMYELENLHGIRLGVFHAKDLKQ
>Gypsy-35_BG_pol#LTR/Gypsy 1336-5280 [Blumeria graminis]
KLRVGKRRTLSKVALRCGDKEPSRIGTAQKNLEKLNSPPLLIDGLINGSFFIKAMVDTGCLCFSVIDENLVRKHDLYSES
ISPRHLRLADGTKANKISRIARIKLDVDGRQEQIWGYVMPNLAYPLILGKPWMEYNDVIYSARRKILRIGSRKHGMVVRA
SGWYEETSPASIRDRISHVQIEQVVQVSEGDFLKMARQRGKIDGPIVGAVSMHDITRALEAKKVSSYDEIKKILPMEIRK
YTKLFLDDGVMNGSTLPPHRPGVDTKVKLYKDEQGRDKEVPWGPLYGMSREELLVLRKTLTELIDKNWIRASSSPGGAPV
LFIKKPGGGLRFCVDYRALNAISERDRYPLPLTRETIQMLSNAKWLSKVDVRSAFHRLRMAEGDEWKTAFRTRFGSFEWL
VTPFGLAGAPAAFQRWINKELGDLLGVTCSAYVDDVVIFTDGDLEDHWEKVNQVLNRLSKADLKLDPLKSAFAKKEIKYL
GFIINVDEGIKVDPEKIRAIASWEAPTDLRGVRSFLGFANFYRSFIQNFAQLSAPLQALTKKGTPFRWRNEHQEAFDKLK
SKFITAPILAMWDGDHETVLETDASGWATGGCLSQFKTPGKLQPVAYYSKKLSPAECNYDIHDKELLSIIRCLNDWRSEL
LGLKDPFIILTDHKNLKYFMTTRKLSERQVRWSQLLSQFNFRLKFRAGKQSERPDALSRRPQDVPKSSKDPRLKEREFTL
LKETWLSKERKDEQIMVASVENQIPKGSYLFEEKELQELWDRGVKHDETTFTQIYKPLWKDEDQFPASLQLKVSRSECEL
DTRGALCFRKRLWIPDWEPLRTALIQKTHDSHLTGHPGRNNTIAILSRSFYWPNMSAMVRKFCRNCDVCGRSHVWRSKRQ
GLLLPLPVPDRFHSELSIDFMTDLPAKEKGDSRYLMVITDRLLKCVTLEAMQTMNAEECAERFLQCHYRFHGFPRALTSD
RGSNWVGDFWKHLCKLAKIEQRLSTARRPAGGGAGGARGAGPGAAGPPRPRRAAPRPRPPFHPETDGATERMNQEVLSYM
RAFISFAQLEWSSMLPSAQLAINNRDNSSTGLSPFFLEHGYHVEPVQQVSSEQVQSAPAKRAERFMARITEAQEYAAAAM
AAAQQIMEDQSNKKRSPAPVFHVGDKVWLNLRNVQTPQPKKKLAWVNAKYSVTRIISPHVVELDVPTKIWPRFHVELLRR
AGEDPLPSQEQDDLQPTAVHSEESGAHPEQIVERILRAERIRRGRGWTRRLLVKWKGFAEPNWEDCSELENVKALDEFEA
KYGTADGVGEDEGARQGRHKPRKEKKKKKQCFERG
>Gypsy-37_BG_gag#LTR/Gypsy 115-1158 [Blumeria graminis]
MSTQKQPLPTHEQLVDTIINMDARLEKQTAVMKSQGEIINSLKKQLEKKPESKNLSGSTERLPTLEKFRGNRNTWDEWYL
SATHKLSKDGPVIGDDFDQFAYIYSRLEGEAARMVSTTARLLSMDRKGNGFEFLTYLDTIFGDPNKEARAQQELYSLKQK
DRESFAKFLPKFETTLATAGWSVYGDIQKISLLKNALSREMRTALIGKKLPTTWSECTSELLTISSEIIAIDQQFKPHFA
GIPSTSKTVENLTAMDWEPIKSASTETRGAFTKRATWVSKETLTFRKKKGLCVRCGHKGHIAPNCKLLPPLNKNLNTNTS
QLIYDEEEYLMLAKPEEIDDLQGKDELL
>Gypsy-37_DWil_pol#LTR/Gypsy 2126-5398  [Drosophila willistoni]
MCKKRVQERAERGTQTKSDACSQTEFPIEQVNHSTARCPTTNNLVSETLQKNISSSQSRSNKRQKSFWAEIKTVQRSMDS
ICALDQGSHDPRPFITVGILDRAISGLLDSGAGVSCIGGELAKQIISGGMPYKKLKVNVTTADGSPQNVVGKMQTNISYN
GQTKEVQIYLVPTLRLDLYLGIDFWKAFELLPSLNIAELDLTTIEHNLNHQQMGQLKKVINQFPSFAQEGLGRTNLISHS
IDVGNAKPVKQRHFPVSPAVEKLMYVEVDRMIELGIIEESVSAWSSPVVLVQKPGKVRLCLDSRKVNEFTIKDAYPLPHI
GGILSRLPKAEFITSLDLKDAFWQIPLELSSREKTAFTVPGRPLYQFKVMPFGLCNAPQTMSRLMDKVVPAKLRNEVFVY
LDDLLIVSDTLECHLDVLRELALCITRAGLTINIGKSKFCMKQVKYLGHIVGEGGIRTDPEKVAAITDFPVPKSIKALRS
FLGLCGWYRKFIENFASLTAPLTDLLRNKRKFVFDEAAEQAFQNIKKKLSKAPVLISADFKKPFYIHCDASKTGVGGVLV
QLSDEGDECPISFVSKKLNKAQKNYSVTEQECLAALVCLKNFRAYVEGHEFTIITDHASLKWLMTQTDLSSRLARWALKL
QGYTFKIEHRKGKLNVVPDVLSRAHSEEIAAINAEDGLYVDLDSEHFKSKSYLELCDRIKGMEQSLPDLKVIDGYVYRLA
EHTNGDQLHDSQVWKLWLPSELVPEILKKAHDSPLASHGGIHKTIERIRRHYFWPGLVGDVKSFIGECETCKTTKAPNFI
MRPLMGKTPESQRFFQKLYVDFLGPYRRSRRGHIGIFIVLDHLTKFVFLKAVKKLTADVTIQYLESELFHAYGVPETIVS
DNGSQFRSEAFKKLLNRYNVTHTLTAVHAPQANASERVNRSIIAAIKAYVRDDQKDWDEYLSQINCALRSAQHSAIGTSP
YYLVFGQHMITSGKTYSLIRKLELLSDRSLRLNQPDSLDLARSKACAVMQKQQQKNGKAYNLRARQINYRVGQEVFRRNF
KQSNFAQGYCSKLGARFIKARVRKKIGTSNYELEDLQGHLIGNYHAKDIRP
>Gypsy-37_BG_pol#LTR/Gypsy 1140-4841 [Blumeria graminis]
GKRRAPVKSHLREPPTSRTVDSHTNSKTLEGKWKTFKPLMNCELFHTTALINGQYQLCTLIDPGSSAFATINKKYVNKLG
LNKFPLTPRTITGVLNNISGVIDQVASIDLDIGGLRIENAWAYVVPNQGEDLILGMPWLKYCCAELEPVHSKLTFRLHNL
SLISNEAREKSSHTGKQSFSVTQVSASTFAGLAHRSKDNKKIQIFAASLADIEKALRPKVQLSLQEITKILPDNYKKFAA
VFNPKEAAALPPHRPGIDHEIPLETDEHGHEKSVPWGPLYNMSHDELLVLRKELTSLMDKEFIQHSKSSAAAPVLFAKKP
GGGLRFCVDYRGINAITKKDRYPLPLIKETLNALNAAKWLTKLDVSAAFHRIRMAKGEEWKTAFRTRYGLFEWKVCPFGL
TGSPATFQRYINWVLRDYLDDFCSAYVDDILIFTTGSLHDHRQKVEKVLSSLMEHGLHLDISKCEFETKCTKYLGYIVEV
GVGVKMDPAKVQAIAEWKAPTTVKSIRSFLGFANYYRLFIKDFALISQPLTNLTRKDVKFDWDQKCEKAFQLIKQQFTEK
PVLATFNPDLETQLESDASGWAVGGTLTQLDPVTNMWKPVAFFSSKHLPAECNYDIHDKELLAVIKCVKEWNSELRGLKK
PFTILTDHKNLEPFGSKKVLNERQIRWMEALAPLNFTLKHRPGNASIVPDALSRREQDVPDNSNDSRITNRERTLLPESL
WINKMVANDLKCPFPDEPNLSRLWDEALKSSDIIASYVKAYITVQNQDRQFPNELNLRMTTGECNISSNGFLEYRERIWL
PNYEPLTTAIIQTVHDSFLSGHPGRDATIALVGRRFFWPGFNQDVRRFVKNCDVCGRTTIWRDKKKGLLKPLPVPCHIWS
EISMDFVTGLPPSGPEKSTTLLVITDRLSKGVILLPVPPGLFDAEGLAKLFIRNYVPHHWIPKAIVSDRGSQFVNAFWNT
ICRRLNVNQRLSTAYHPETDGSTERMNQEVETYLRAYVAYKQNDWACWISIAQIAINNKPAKSTQISPFFMSHGYNAELI
LVENTTKELSGTPASRGQLVVEKLREAHNFAQTSMAVAQQQQEKYANEKREAATSYQVGDKVWLNLKNVSTNRPSKKLDW
IHAKYTVTKLLKNTAHVYELDTPKGIHNKFHTSLLRPAFNDPLPSQQTDDRQPEGLITNEGDVEFGIDEIIDIRQRNIGR
GKKKEVLVKWTGYAKPSWHPYSDFEETIALEAFE
>TcViper_gag#LTR/Viper 169-1509 [Trypanosoma cruzi]
MALVPYTPSEWCDIGARLWDMVCQRGETQVQMTFIDGNQMSDETLTVAASSTGLCLFHGPISKAWQDSTLIGHIANLRAP
QIPNFETQALLPAMGAARELGHQQGLITAERERLNIDYANAVADVQNRNAQLNSQVEEAHINLSVRESNIAGAGNQVLEL
RQQLEADRAQLREREFNLGXLTGQLQEREARLNALQTARDAETAGRDESPATRHVANDGVTTLPHQTDILMAGGVPSSAA
RRSSAAYRPPHGNAGRPHFHPSTPLPSRTSPLEAQLPMEEDRSFCAFDVTTWPPRVWNEGASGVVVDLRCAYQCWQQEDE
QVKLAFDNLVEWIGALEXGQDPTDRFMNLGRSLLNTFRMQLTIASDPGIRLSKLRARLYTAVHQTDAYARAAQLFVDRRE
TQRTLRCQRCHIYGHEASTCNVRPRGNYSQYRRPSKNGRGAAARRS
>T702_FREDI/88-272 transposon family T11 Pfam:PF01609
IENILISSRKFSLPGKKELLKMPSQENLVVMDVTESPIERPKKSQKKFFSGKAGEHTLKTQLVIHQKTSQIICLGHGKGR
IHDFRLFKTSGVKFSELLKVIADKGYQGITKIHKLSETPIKKPKGKKLAKEQKEYNRELNRLRIVVEHVNRRLKIFNILS
NQYRNRHRRFGLRSNLIAGIYNYEL
>Q48342_STRLI/83-254 transposon family T11 Pfam:PF01609
LAPTLAEAVRAASMKAFVLLDGTLLPIDRIAADRPFYSGKHKKHGMNVQVIADPSGRLLWASPALPGAVHDVRAAREHGI
IDTLATADVNCWADKGYQGAGGTVRVPYRGRWETLSAGQQAVNRSHAKIRALVEQAVATLKSWRLLRRLRCSTTRVTVLV
QAVLCLHQASSA
>T5377_BACST/95-320 transposon family T11 Pfam:PF01609
IISKCNRQTRRSLRFPKPLRVVDSTTVTVGKNRLPWAPYHGERAGVKLHVAYSPEFSLPADVVETTGLRHDGPVGEQLTN
AQQVLVEDRAYFKIERLDRFVEQHQLFVIRMKDNIELHQKKSLNRLSSTSSSVQTDFTCQLGTKQCRSTKRHRVVIFRDA
NGRDIRVVTNLFHASAETIADMYQQRWAVEVFFRWVKQYLNVPTLFGTTENAVYNQLFAAFIAYVL
>INSL_ECOLI/91-348 transposon family T11 Pfam:PF01609
LAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIAD
RGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVS
LPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAK
EPELAKAWIFANLLAAFL
>Q9UWS3_SULSO/78-304 transposon family T11 Pfam:PF01609
MGRMTLRGVRDRRVAVDFHAIPQYHADKSFLSRIKPTKGTSWGLVQAAIFLLGRTRSFLDVIPVTVKNVAEGFKAVMEVI
VKELEEDKLRLVMVFADREFAVNEVIRFLLELGLDFVISAKAQMYKKYKGMLQDVDVSFGGVRYTGFLCVRHGSGAYLII
LRKEDGKIIAFLVRKEMDLYDAIVLAEMYRERWGIENAFRSLEEFRIRTRTCDVRKELVLVLLSYLL
>Q08536_BACFR/136-338 transposon family T11 Pfam:PF01609
FRTFMEAKGLQFNEGRIIDASFVVAPRQRNTREENAKIKEGKGDELWNDNPHKKFHKDVDARWTEKRGDTFYGYKQHVKV
DKGNKVILSYATTPANVHDSKGFEQLLDESDKDKDLYLDAGYAGQESTVKEHGMNPIICEKGRRNHPLTEKQKAENRRKS
KTRCLVEHVFGFEEQSMHGLIVRTIGIVRAKANVAMTNLTYNI
>Q9RZM2_DEIRA/81-362 transposon family T11 Pfam:PF01609
IPWGALHQATVSTAIESGLISPLCVLAIDASFHRKAGQHTAHLGSFWNGCAARTERGIEQSCCALIDVQHRQALTVDVRQ
TLTGSEAPTRLEQTADQLDDVLLDLRTVQQLDLAAVVADGNYAKEPIVETVTGHGLPFISRLPRNANLNDLYTGEHPRRR
GRKKKFDGKVDFSDLQRFDLVSARPTERVWTQVVWSVQWAREVRAVVIQQIGKKGQVTGYAVLFSTAVTMPAHEVMALYR
SRFEIELIFRDAKQFLGGQDVQLRSQQGIEAHWNVVLLTLNL
>O34164_ACIHA/85-276 transposon family T11 Pfam:PF01609
AISYQKSSDGLHLLVDSTGMKFLGEGEWKRKKHGAEYRRQWRKLHIGIDAKTLQIRAIQLTTNNVSHSQVLGDLLNQIPQ
DEQIDSVYTDGAYDTKQCRQVIADRQAHAVIPPRKNAKPWKDTKSSSLERNELLRTVKRLGRTLWKKWSGYHRRSLVETK
MHCIKLLGDKLMARSFPSQVNEIHARVAVLNR
>O05546_GLUOX/99-268 transposon family T11 Pfam:PF01609
VCLMLDREAAGRETSPSGGVIDSQSIKAPHAKTRGYDAGKKIVGRKRHIAVDTDGRLLLVQLTTADISDSAGGQMILDAI
RKRWPWMKHLFADGAYDRLQLMDKATFLDFTVEIIRRSETAKGFEILPRRWVVERTFGWMIRWRRLVKDYEQRIDVAEAM
IHIAMGSLML
>Q50761_MYCTU/83-294 transposon family T11 Pfam:PF01609
VAAVFGVDAEVAEDIEKLLSVDSTNVRAHQHSAGAARTRSPQGALSDYKKSADEPDDHAIGRSRGGLTTKIHALTDQREA
PVRIRLTAGQAGDNPQLLPLLDDYRHASTEYALGSTDFRLLADKAYSHPSTRAALRSKKIKHTIPERHDQIDRRKAKGSA
GGRPPAFDAALYGLRNTVERGFHRLKQWRGIATRYDKYALTYLGGVLLACAV
>O50345_LACHE/24-184 transposon family T11 Pfam:PF01609
LRSKQDRSALTSFIIVDAQSVKNTETAENKGYDAGKKISGIKRHLAVDMNGFPQAIHLTRANVSDRDGASAMLALNAENL
RRVRSVLVDGGYSGRNFAMDVQLNLKATTQVAKRNELHKFEVLPQRWIIERSFSWLEKYRRLWKNCERQLHTSTTMVTLA
F
>INSG_ECOLI/107-352 transposon family T11 Pfam:PF01609
VFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMK
NSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNAWSLAGEHRHWMIPLRKGAQYEEIRKLGKGDHLVKLKTSPQARKKWP
GLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMGDLYSHRWEIELGYREIKQTMQRSRLTLRSKKPELVEQELWGV
LLAYNL
>Q70LL2_IDEDE/158-259 transposon family T12 Pfam:PF01610
YVGIDETSVKRGHEYITVVHDLEAKRLLFATPGRGHATLQVFAQDMRAHGGDPLTIEHACIDMSAAYAKGVDQSLPNARI
SYDRFHVVALANAAMDEVRREE
>Q6XMW6_RHOER/154-254 transposon family T12 Pfam:PF01610
DIGVDEISWRRHHKYLTLISDHDTGTIVWGTEGKSAAALDEFFTDTLPDGAAEQVAAVSMDLGPAYRKSVRAHAPQATIC
FDPFHVVKLATAALDDVRRRQ
>Q7D3X6_AGRT5/43-137 transposon family T12 Pfam:PF01610
VIGIDDWAWRRNHRYGTIVCDLERRRPVSLLPDREPATAEAWLRGNPQIEIIARDRGGAYGLAAAKALPDAVQVADRWHL
MENASRAFLDAVRKS
>Q6U8A6_STRTR/169-267 transposon family T12 Pfam:PF01610
NMSWDEYGFKKGKMSFIAQDFDSLKVITILDGRTQATIRNHFLRYSRQDRNRVKVITMDMFSPYYDIARKLFPNAKIVLD
RFHIVQHLSRAMNRVRIQI
>Q8VLM9_ECOLI/159-253 transposon family T12 Pfam:PF01610
HVGIDEWAWHRGHRYGTLIVNLDTHRPLVLLPGRDQRTLATWFRKYPEIQIVSRDRSGVYATAAREGAPQARQVADRWHL
LKNIGDALERMMYRH
>Q51984_PSEPU/281-376 transposon family T12 Pfam:PF01610
VLGIDELYLQRTYRCVLTNIEEETIIDLLESRTKPQVTAYLSRLKDRKDIEIVCMDMWNPYREVAKALMPQAAIVVDKFH
IQRMANEVMEKIRRGI
>Q9RZR1_DEIRA/33-258 transposon family T11 Pfam:PF01609
FRDEQLDRGFFIALLVVHLPPGKVLLSLDRTNWEHGETPINFLVLGAVVHGFTLPLIWVPLDQSGNSHTYARMWLVLKLL
RAWPAKRWLGLVADREFIGAEWFRFLRRQGIKRAIRIRQTDMLDDMKGKEWFEHVQHGHFHEIGEKVFVFGELMRVVATR
SPVGDLVIIATDFSARKTWRLYKQRWSIECTFSSFKKRGFDLERTGMTERSRLQRLFGLVTLAWMF
>O34116_LACLA/92-365 transposon family T11 Pfam:PF01609
IKLKAFEQLFYRTIPSAQPNKLYKGYRIFAHDGSDLNIPYNEKESDTHYRVGKFGKHVGSLHLNALYDPLNKHYVAVDFQ
KIKQLNERKSLCQIVDDFDFTSPTIIIADRGYESFNVYEHIKKSGQKFLIRAKDTKSNGLLNGLDLPSDGTFDKKITLQL
TRRQTNKVKKDKHYHFLHKRANFDYLPIRSKETYPISLRVVRIKLNEDTYESLVTNLDPFLFTSEDLKVLYHLRWGIETS
FRELKYALGLSHFHSKKLDFIIQEIFARLIMYNF
>Q57460_ECOLI/102-363 transposon family T11 Pfam:PF01609
SYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMS
NVIAVCDREADIHAYLQDRLAHNERFVVRSKHPRKDVESGLYLIDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKA
SLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTGEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQ
RMEEPDNLERMVSILSFVAVRL
>Q44285_AERSA/84-334 transposon family T11 Pfam:PF01609
IVIDTLLEALLCWVNEQRTHQGKPIIAFDGKVLRGSFRGNAKDALQLVTAYDTENGLVLSQKATPNKKGEIETVKDMLDI
LELKGAVVTLDALHCQRETLEKISEKKAHVVVQVKNNQPKLYRAVQSQFQSLFDAQKEKIVVEHKESGHGRQEERYVFQL
KAKLPPESTEKWPTIRSIIAVERHRSANGKGTVDTSYYVSSLSPKHKLLGHYIRQHWRIENSQHYILDVVFNEDASRIAM
EDAVENMALFR
>Q9R793_VIBAN/82-342 transposon family T11 Pfam:PF01609
MNPAALQRSFIAWMKDCHTLTDGEVIAIDGKTLRGSYDRSKGKGTIHMVNAFATANGMSIGQQKVDSKSNEITAIPKLLD
LLEVKGCLVTIDAMGCQKKIAQKILDKEADYLLAVKGNQGMLEQAFDDYFRMDMLQDFDGSSYSTQEKSHGRTETRVALV
NRDLSVLGDIEHEWPELKSMGIVASIRQESAVATEQDVSIRYYICSKELEAQTLLEATRSHWGVEAMHWSLDTAFSEDNS
RIRADDRAEALARIRQMCLNL
>Pi_model.supercont1.2.6.1 1411 novel transposase Pi-A IRs plus 9 bp TSD
MRRMMRKFPEAVCVDATYGTNINRYRLFSFMITDKFGCGAFAQHSLVDGESRLNMECAVRAFKQNNTEWKNVKVIVIDKD
FTELALLRDEFPCATIILCHFHVIDYLQRAVSKTDYGFSSFEKMHVKNTLTLMVRAENESLFDDYLSALRKLCASKPTFL
DYFEENWLNCKELWCTFERENIPHLDNNTNNRLEASWGAAKDLLHRHMAMDECIDHLLFLQQSAEDVYNAKAKRVGFRYN
QNYDDEMTALTKCATHYACKLVEEQYHVSGRVSYVVLSEGNTFTLSSSTASGAKYAVSLYESSCSCAFYQTVLLPCRHIL
YLRRQHSKFRSIIPCEAIPLRWLLADDGEDSSVPDMTQKFYIEDVEAPSRRVLGHNQKYRSGFAVCQRIAEVIADKGSRS
FRVWLNHLENL
>Pi_model.supercont1.15.2.1 1629 novel transposase Pi-A IRs plus 9 bp TSD
MRTLFEQFPEVLLIDATHGTNRSKYKVFSFMAHDTFGKGQLVQHALLQNERYTTLLTALEEFKVNNPAWKRLQCVLVDKD
FTEISVLKEAFSGVTILLCQFHVLKYLREEIVSADYGFSKTQKEKLGGAMSLMVYAKTEEEYEKHLRYMVLLASIGYYVP
ASNVPEPTGSEPNLDDRQSGSVGGESGAVGVASGTVGHAKSGTDRTPTREPVRCGEEHPFVAYFRRNWDNCREMWCAYKR
QNTITLENNTNNRLEASWKQLKAWVDSFMSVDECIASMMYYQTLQEKLFIGEVTKNVNVQHPDYDGEMTWLANIVSEHAC
DLIYGQYSFALGRAAYTFSERLPDVYLIKSTCKEIDALDEVDTEYSATKCDWTCSCLFMCTRLLPCRHVFHLRKALCQGA
VIPTLTLNKIWLISTVRSAIENNGTSNHVSTPKPFEVKNVLSARNRPWDLNRKYREALPIASEICDTMAGLGMVQYQKAM
QYLQEVAGRFKRGEFEDPTRAVGEPDPEELSPDTSVPATCVSEPDEEVTFATAREEDNHIANLSERSGQSGQSGQSDESG
QSGRSDHCGALEESTQTIESSGIGNESSRGDCGALLINDETPSNAPLEAATEDTPFEIAIPPRSRGRPK
>Pi_model.supercont1.15.11.1 1441 novel transposase Pi-A IRs plus 9 bp TSD
MRRWFKAFPEVMLIDATHNTNESRYKLFSFMVNDVYGHGQYVHHSLMENESAECLSDAIGSFKSNNSSWEQVRVIVIDKD
MGELGLLEMEFPGVKVILCHFHLKKYIRTELAKSEYGGPSSFDKDQVEDAIDMMRLAVSTDDYVKYLKYLYFLLEGVRLK
REDPVPVPTHPFLKYFMKNWDSMKERWALYARLDVPHLGNHTNNRLETSWGHIKEVLKPEMALDECVDTLMFLQAVAEME
YGKKITDVGQMRYDGADHELEQLAREVSPYAYRLVEEQYWASKDRKTSYGVEEIHSSLFVLTGGGDTSTCYHVDTTRYHC
SCVFMKTMLLPCRHVMYWRLLRGKQAIPFRYIAPRWRLSCKLNQPAPEEDVPDKTVACTTFQVRDSAMTARRHHVLNGTT
KYKHALECGKSIADIMSRNGTFVFGEMMSALEKFEDIIKDG
>PITG_06018 hAT family transposase IRs + 8bp TSD [Phytophthora infestans]
MKLQDDNVTLLDVRDIFDALIEKHSVVKKYLAADANIVKDVDFERACAVALSGAVDELTNDQELMLQPFETVPAITTPDT
RHGRPQGFADRVLATRKKRRGAKKVFDGVLFIPPTSNTVERLFSVAKHTLSHHRQRMLPIHLETVLFLKMNRPFWDANTV
AAIVNAK
>PITT_08743.gag GAG protein (gypsy/Ty3) [Phytophthora infestans]
MPTIAQLRAEIDRLNQAMADRTKVPSHLPKFTGKRGDDVREWLFQIENACRINNIPIEDTSARLPGIAGSAMEKPASGWF
LHWSSTTRAEEHTWGFYREHVLQHFEASNYQSVLREKLQRLKQTADIETYNGEYSALIFRVEGMSVLDQVLYYANGLKPR
TRSYVKLENPETLSDAMNLAVKYEVTHFVDESRERHTRRDKRKPSTEHAPSHDKSLKGKTFRGKGRFKAKTSSKRAESRT
CFHCKKPGHIKTNCFLWKKEQEKQGNGQPRQ
>Pi_model.supercont1.847.1.1 1518 (mutator-like) mutator-like transposase [Phytophthora infestans]
HQMRYRIWFCNSSTCKEDNLSCTYWLKVLWCLQTDINDFFEHGQHASPVGSPHSRPFTRVMKFETRKMTETSATPNRILN
SLIDQFSLNQGNVPKLQTVQNFVYNHKKTTLLQTDILDDMISIARSAQYSDDLDESTTFTFGYNVDNEGDPVLGDGTDED
HFVVAFSTKTMMRQLDRDPESFLFHMDATFKLNTVGFPLFVCGISDASRSFFPVALFLVSQRTETQYAAALLSIKQQFLR
VVGRPVRVTYFMADAEDAQYNGFRRVISSGSESSYIMCWFHVVKNVRDKLKGLSDAAVHLVFKHLYEMHYARNHLEYEEL
KATAFQKWANVDSLGNFVDYFNREWVISRYRNWQCFHSPSGYAKTNNPAETFNKLIKRGHSLRVRLKTGELMQKVLLLCK
HQSIRASVFAIEAKPSEKLVSRAKKLYLSPNLAITERQYDIRFLLGEMSTAEDILVARSYKSGDDYRDTQDKKEVNKRRM
ERWGQPTHGWDVNVTRRVCPSRSFFKYAFCVHLVVCMK
>Pi_model.supercont1.37.9.1 1380 (hAT) hAT family transposase [Phytophthora infestans]
ITRLVALVEESIREKLPEHYGIMFDGWSDGSTHYISIIATFMNNGSYQEVLLGCSRPLNEKPYTAAEHYALLKCVLSLYG
KSISSPSVLIGDNCPTNKALADLVGVPLIGCGCHKLNLAVRSFLERRPGVQATISKVDRIVSELRNLKAAGALRELTPLH
PIKRNVTRWSSTHKMLKRFLKIEKEAKQLDDVNSLRRTDTERIRSIMPSLANFRSVMTDLQKRGQHIGDVQGFFQEMTED
YPELKDYLAADANIAHSPLFESAVVKILGGKKDSLTLEERALAKRFVVHQPQQEQSGSTKRANYADSLRARKRQRLEQSD
EYVDLRFIAGTSASAERLFSSAKHVLRFTRKRLTPVNFEKILFLKHNRFLWNATMVAQAM
>gi|163699382|ref|ZP_02118242.1| (TyrRecombinase_Crypton) putative integrase [Methylobacterium nodulans ORS 2060]
MSPVLASGNARLSEPSGAPSEATLAIPIDCNPELPEPVIGYLRDSLADSSLRAYRSDLAQFTAWGGTIPASDRTLATYLA
HHAESHSVATLTRWLASLAKAHRAAGLPSPTSSELVRATLRGIKRRKGTAQDQAAPLLRDDLVQVLNGLGDGLKDVRDRA
LLLLGFAGAFRRSELVGLDTDDLEPVRQGLIVHLRRSKTDPLGAGRKVGIPHGRTRHCPVAAVELWLSRSGITQGPLFRG
LNRHGQLLAGRLSGEAVSVIVKERVQAAGYDPAPYSGHSLRAGFATSAAQVGVSSVKIRAQTGHASDAMLGRYIRDAELF
LGNAALALL
>Pi_model.supercont1.6.7.1 1388 (hAT) hAT family transposase [Phytophthora infestans]
MCLLVREVETVIAGILPKSFGIIFDGWTFRSEHYVAVFASFRHDGKTQNILVAMAPLVDDEVSDHTARSHVKFLDTILSY
YGRSKANIVYIVGDNCSVNGAVADLLQVSMVGCASHRLNLAVNLLLSGDDELITKIQKLMYKVKNSLLVSAKLRRKTLLR
PVPKQDTRWSSTFAMVNRYFELKEFISDDIEEELAEFMPTRREEKQLKTILNTLKMYESTSKKLQSADDITLLDVRDLFD
ALIAQKPEVAKYLQADAEIVKSPVFERACVNVLLGREGSLSDDEKTMLEPLAPEDAPPSSSSETTALGKGFAAIALEQAR
RLRQTTSRFSDQVSMIAPTSNIVERFFSQAKAVVGMHRQAMTPLHLESILFLKVNRTYWSAATVRKVV
>Pi_model.supercont1.76.4.1 1378 (hAT) hAT family transposase [Phytophthora infestans]
MHDVAKKVGKTIESMLGSCFGIMFDGWSSGSMHYIAVYGAFDTDGDLRLQLLAVSPFDDGSQDADVHIKLFDGVLDVYNK
TLDIVTFIVGDNCSTNQSIATKLGVPLVGCASHRFNLAVNKYLADYEPLLAQVNTLMSKLCQVNNFAELSKVTSLHPIKR
NMTRWSSSFEMLQRYIRIRPQIKTVDAVEELIPTGASHRKLVALLEHMKKFQSVTKKLQTEGIDLADVRLLFDSVVAEYP
CMRGHLKADANIVHSPVFESAVVKVINGVNLSNAESQAVKRFEVPVCGNKRKIRAEDYATQILRAGPGKRSKQDKGAIYN
SLLKHLPPTSNTCERLFSQCKLVLTPQRTSMLPANFELLMFLRANRSLWDVTTLASAR
>Pi_model.supercont1.8.29.1 1258 (hAT) hAT family transposase [Phytophthora infestans]
AQIVAYRAVTSTMSLCRSTFAAAAVRYASRRAEMTTPISCSMCAANRRLATIMQVPLVGCSSHRLNRAVRQHMAQHDDDL
AAVQALMTKLRTIKQSAKLRFKTPLRPVIRQDTRWGSTFAMVHRYFALLEFLDQDDEELQDLLPSAACNRRLKTLYADLK
DFESVSFSKALQAESVSLLDVRVWFDGLIEAHPAFAAFIGPRANIVHSPDFESGCVRVLKGNGARLTASEKRALRPFLEV
ATDPTNHSVKLPTAADTG
>O96691_BACRY/534-615 (hAT) hAT dimerisation domain, hATC (PF05699)
EVERYSREEVEMTENFNLMEWWQSNQSKYPHLSKFALQIHAIPASSAAAERSFSLAGNLITEKRNRIAPGSVDSLLFLNT
YY
>Q9ZU73_ARATH/198-282 (hAT) hAT dimerisation domain, hATC (PF05699)
ALYEYLDEPTLDMVAFRSLDVLKYWKDNGSRFKELSRMVCDVLCIPITTMSSESSFSVGSKVLNKYKSRLLPSNVQALIC
ARNWL
>Q9C513_ARATH/600-686 (hAT) hAT dimerisation domain, hATC (PF05699)
ELDIYLKAEVENPKTLPGMEWDVLSWWRLNSQKYPVLSEIARDVLAMQVSSVASESAFSTSGRLLEPSRSCLTHYMVETL
VCLEQWL
>Q9S9W0_ARATH/498-582 (hAT) hAT dimerisation domain, hATC (PF05699)
ALDMYLEDPKLEMKNHPNLNVLQYWKENRLRFGALAYMAMDVLSIPITSVASESSFSIGSHVLNKYRSRLLPTNVQALLC
TRSWL
>gi|23312392|ref|NP_663761.1| (DDE and CENP-B) tigger transposable element derived 2 [Homo sapiens]
MLGKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTSGVSKRKSMKSSTYEELD
RVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNASSGWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQ
EFVEKENLQPEQIYGADQTGLFWKCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKGT
DLSNLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLEKAVLLLDFPPARPNEEMLSSDDGRIIVKYLPPNVT
SLIQPMSQGVLATVKRYYRAGLLQKYMDEGNDPKIFWKNLTVLDAIYEVSRAWNMVKSSTITKAWKKLFPGNEENSGMNI
DEGAILAANLATVLQNTEECEHVDIENIDQWFDSRSSDSSCQVLTDSESAEDQTKAAEQKPSSKSRKTELNPEKHISHKA
ALEWTENLLDYLEQQDDMLLSDKLVLRRLRTIIRKKQKIQNNKNH
>Q9LUU2_ARATH/470-552 (hAT) hAT dimerisation domain, hATC (PF05699)
ELDSYLKEPVMEWKKDFNALEWWRE
>O82332_ARATH/606-692 (hAT) hAT dimerisation domain, hATC (PF05699)
ELDLYLNEAVETPHLLMGIESDVLDWWKLNSGKFLVLSLIAKDIFAMQVSSVASESAFSTSGRVLDPFRSCLTHYMIEVL
MCTEQWL
>O74636_FUSOX/689-771 (hAT) hAT dimerisation domain, hATC (PF05699)
ELDEFMARANRADVEVEDPLEWWVCHASDYPILSKMAFDLFSCPAMSAECERVFSQTKKVITDERNRLKSDTVAALECQK
HLL
>Q92199_ASCIM/515-594 (hAT) hAT dimerisation domain, hATC (PF05699)
ELEAFLSEPCQKVPNPVEWWIVNQDRFPLLSKLALNILSIPAMSAECERVFSNAKLILTERRRTIGDEALEANQVLRAWI
>Q92385_TOLIN/710-793 (hAT) hAT dimerisation domain, hATC (PF05699)
EYERYIQTFTHADDKYQFRPLSWWQEHEMEYPNLCRMATDLLSIPTMSAETERSFSSAGKMVSPLRTRLDRHTIGMAQGM
RSWS
>Q9M2N5_ARATH/592-674 (hAT) hAT dimerisation domain, hATC (PF05699)
ELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAR
EWL
>Q9XI39_ARATH/712-794 (hAT) hAT dimerisation domain, hATC (PF05699)
ELDQYLEENLIPRSEDFNVLSWWRVNNTNYPTLSKMAVDLLSVPFSTVSPDSVFDTEVKQMDNYRTSLPGETLEALLCTK
DWL
>Q38466_BPPHH/103-172 transposon family T35 Pfam:PF07282
FARLQERIEDKAREAGIPVEYIRPEYTSQTCHECGHIGYRDGDEFRCQNDECWVSEYHADINAAVNIADR
>Q97WZ3_SULSO/295-367 transposon family T35 Pfam:PF07282
FSSMKNAIIEKAREFGVPVVLVNPSYTSTVCPIHGANIVYQLDGGDAPRVGVCEKGKEKWHRDVVALYNLARR
>Q8PZB5_METMA/239-305 transposon family T35 Pfam:PF07282
FLQLQQFIEYKARLRGVEVVYIDPYATSKKCSRCGHTGNRQSKRFECPCCGHVDHADVNAAFNIALT
>Q8XFY4_ANASP/92-400 transposon family T36 Pfam:PF07592
LEDIKSLVDPQTQTDPSFKSTRLYTRMTASVVRrqliEQFGYSDKElpSSETIRRRLNDLGYTLKRVLKTKPIKKIPETE
AIFEQVEQINTEADNDPHTLrISIDAKVAVKIGEFDRGGKTRIPTTSLDHDFPTEMTLIPYGIFIPEYNELFLFFVSSKL
TADCIVDLLESWWQNVKHRFAHIQKLVINQDNGPENHSRRTQFMKRVVDFSTSSQLTLQLAYYPPYHSKYNPIERCFGWL
EQHWNGSLLDTVETVLNFAQTLTFKGKNpvVTLVEKVYSTGVKLTTSAMEEIETQinrLPNLKKWFVEI
>Q97A87_THEVO/24-92 transposon family T35 Pfam:PF07282
AVELEKFIEYKAEDAGKKVIYINPKYSPQKCSRCGYVSKENRHDSVFKCKNCGFELNADLNASRNIEVI
>Q96XT5_SULTO/297-363 transposon family T35 Pfam:PF07282
YRRVQYWIEWQAKKHGLLVVYVNPHYSSVSCPKCGKKMVEVSYRWFKCICGYENDRDVIGIMNLNRR
>Q9RDU8_PSEPV/69-255 transposon family T32 Pfam:PF04986
GAVAFIHRFGSSLNEHVHFHCCVIDGVFEPAEMDGATEANATPGVVFHAATELDPEAIAAVQAQARRRILRTFVRRGLIE
KCDAEEMAGWEHGGGFSVDAAVRIEGNDRAGLERLLRYCARPPFALEHLHQSDAEHLVYHCPKPRPDGPRDLVLTPLELI
DRIAALVPRPRTHRHRYYGVLAPNAPL
>Q56753_9FLAO/152-327 transposon family T32 Pfam:PF04986
GMIAVLHTWGQNLSLHPHLHCIVPGGGVDESGRWKNLRSDGKFLFPVKALSKVFRAKFCEKLKDKNLKEYTKIRQNLWEK
PWVVYAKKPFGSPKSVVEYLGRYTHKIAISNQRIRKIDAKTVTFSYKDYRQKGIKKQMVLSHEEFIRRFAMHILPKRFVK
IRHYGFLSSTWKRIKL
>Q9X6A1_RHIME/6-116 transposon family T34 Pfam:PF05717
QRLPILIATRPVDFRCGHQALALMVQTELKLDPHSGVTVIFRSKRGDRLKILVWDGTGMVLTYKILEHGSFAWPKVQDGT
MRLSRGQYEALFEGLDWRRVMAQRVTAPSAA
>Q8TXQ5_METKA/374-440 transposon family T35 Pfam:PF07282
YKRIIREIKRKCEEYGIEVIEASPAYTSVTCPMCRSKCKRNGGLVICSKCGKTMNADIVRAYNLLTR
>Q97PZ5_STRPN/7-115 transposon family T34 Pfam:PF05717
SLGQVYLVCGKTDMRQGIDSLAYLVKTHFELDPFSGQVFLFCGGRKDRFKALYWDGQGFWLLYKRFENGKLTWPSTEKDV
KALTPEQVDWLMKGFSITPKINLSESRDF
>O96916_ANOGA/63-131 transposon family T5 Pfam:PF01498
DARIVEMIRADPFKTCTRIKQELGLQVSAKTVSRRLHAAGFCARRPRKVRKLQHHHVEARIRFAEEHLA
>O68059_RHOCA/92-191 transposon family T9 Pfam:PF01548
LGAAGFDLKLVSSVALARTREALHNSWDKNDPKDAQVILRMLEIGAVQVFHDPLVVGTCDIQELSKTYEMVARSKTELWH
RILTHYLPLYFPEADRFHRS
>Q48909_MYCAV/92-191 transposon family T9 Pfam:PF01548
LADAGKSVRYLTGRAVWQASVTYRGGEAKTDAKDARVIADQSRMRGADLPVLHPDDDLITELRMLTAHRADLVADRTRTI
NRLRHQLIAVCPALERVAQL
>Y4QE_RHISN/66-157 transposon family T9 Pfam:PF01548
WGEVEASDAGIRRAIKQITAKFEHVYFCYEAGPTGYGLYRLIRSLGHECIVVAPSLIPRKPGDRVKTNRRDAISLARLLR
AGELTAVWVPDE
>gi|168577487|ref|ZP_02723141.1| IS1016 transposase [Streptococcus pneumoniae MLV-016]
MRKSRLSQYKQNKLIELFVAGVTARTAAELVGVNKNTAAYYFHRLRLLIYQNSPHLEMFDGEVEADESYFGGQRKGKRGR
GAAGKVAVFGLLKRNGKVYTVTVPNTQTATLFPIIREQVKPDSIVYTDCYRSYDVLDVSEFSHFSFAETSFSYQSQHTFC
RTTKPY
>gi|121634286|ref|YP_974531.1| probable Insertion element IS1016 transposase [Neisseria meningitidis FAM18]
MLFVLPAASSPCPDLNLIHYKLIELFVAGVTARKAAELVGVNKNTAAYYFHRLRLLIYQNSPHLEMFDGEVEADESYFGG
QRKGKRGRGAAGKVAVFGLLKRNGKVYTVTVPNTQTATLFPIIREQVKPDSIFCSYDVLDVREFSHFSFAETSFRINHST
HFAERQNHINGIENFWNQAKRHLRKFNGIPKAHFELYLKECEWRFNNSEIKVLVPS
>O68472_ANASP/68-164 transposon family T9 Pfam:PF01548
LQAAMLPVALINPRQGRNFAKATGKLAKTDAIDAQILAHFGEAMKPQVLNIESQASRQLGELISRRRQLVEMQTAEKNRR
SRARGKALADIEAHIEY
>Q48844_LACSK/1-77 transposon family T8 Pfam:PF01527
MKRYQDDFKASIVKMHREEKRSIRSLSEEYGVSPAAIHNWVKGAKSVELEDGTEVTSKEFKQLQKENQRLKEELEIL
>Q48490_KLEPN/1-952 transposon family T7 Pfam:PF01526
MSRRHIFTERQRAALFDLPTDELSLLKFYTLGDDDLENIRQRRRPENRIGFALQLCALRYPGRALAPGEMIPREVLSFVG
AQLGVPADALLTYATRRQTRQQHMDTLREIYGYKTFTGRGARDLREWTFGQAEDARSNEDLAHRFIVRCRETSTILPAVS
TIERLCADALVAAERRIETRIVENLTADVRDHLDKLLSEMLAGNISRFIWLRNFEVGNNSAAANRLLDRLEFLRTLNINH
SALASIPAHRIARLRRQGERYFTDGLRDITSDRRWAILAVCVVEWEAAIADAIVETHDRIVGKTWREAKRQHDETISGSK
ATLTDTIRTFTALGASLLEARSDGTPLEMAVASSVAWDRLAQLVATGTQLSNTLADEPLAYVGQGYHRFRRYAPRMLRCL
KLEAAPVAGPLVAAALSIGEMKGVASPERRFLRPSSKWNRHLRAQEKGDTRLWEVAVLFHLRDAFRSGDVWLAHSRRYGD
LKQVLVPMIAAQENAKLAVPSNPQDWLADRKARLTIALKRLARAARNGTIPHGSIEDGTLRIDRLTADVPDGAEALILDL
YRRMPSVRITDMLLEVDAALGFTDAFTHLRTGAPCRDRIGLLNVLLAEGLNLGLRKMAEATNTHDYWQLSRLARWHVESE
AMNQALAIVVAAQGKLPMSRVWGMGTSASSDGQFFPTARHGEAMNMVNAKYGSVPGLKAYTHVSDQFAPFACQSIPATVS
EAPYILDGLLMNEVGRHVREQYADTAGFTDHLFGASSLLGYNLVLRIRDLPSKRLYVFNPDTTPRELRKLVGGKAREDLI
VANWPDIFRCAATMTAGKIRPSQLLRKLASYPRQNNLAVALREVGRIERTLFIIEWILDTDMQRRAQIGLNKGEAHHALK
NALRIGRQGEIRDRTTEGQHYRIAGLNLLTAVIIYWNTVHLGHAVTERRNEGLDVPPEFLPHISPLAGRTFY
>Q52592_9ZZZZ/17-119 transposon family T8 Pfam:PF01527
RRGNRRWPNDLKARIVAESLQPGARVVDVALTYDLAAHQLSDWRRQARQGLLALPAELMPSMPAVPCDNSGSLEPAFVPL
AITTEPQEAADVSPVPEPVAAPS
>Q9AI25_ECOLI/8-77 transposon family T8 Pfam:PF01527
VEPRRSFSNEFKLQMVKLALQPRGSVARIAREHDINDNLLFKWLRLSLIKGRISRRLPVTNSSGIGVELL
>Q9R3N0_ECOLI/91-178 transposon family T8 Pfam:PF01527
KPRRNRFSPEFKWRLVQQTLLPGACVAQIARENGINDNLLFNWRHLWRNGGLQPPGEHETSLLPVTLTPEPDNKIPAPVQ
IPEQINTL
>Q48515_LEPBO/222-306 transposon family T20 Pfam:PF02371
GILRCFRGVDYLTAMFLLCEVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGTG
SKIVT
>Y4PF_RHISN/254-342 transposon family T20 Pfam:PF02371
KRLAEIPGVGPIGASLLLMKTPDPRMFKSGRDFAAWIGLTPKDHSTAGKVRLGVITRAGDEMLRSILVVGATSLLQQVRT
GRSRHASAW
>Q9SY51_ARATH/1-229 transposon family T21 Pfam:PF02992
MDMRWHAEHMSPEGEMHNPSDGAAWKNFNEVYPNFAAESRNIYLGLSTDGFNLVSMNGEAHSVWHVIVTPYNLPSGMCIK
REFFFLSVLVPGPKHPKKNLDIYLQPLIKELVSLWIDGEEAYDKSKKKKFTMRVALTWAISDFSTYGMLSVWMTHGLLSC
PYCLDNTISFWLPNERKHSWFDCHGMFLPLGHMYMQNVQAFRGGKEVRDDPPFTVDCGGNEHEKFAQTI
>Q04219_ANTMA/287-511 transposon family T21 Pfam:PF02992
SFMRWHKEERTKDGQLRHPSDSPLWHAFDHQHPDFAEDPRNIRLGLAADGFNPFRTMSVAHSTWPVILTPYNIPPWMCMK
EPFFFLTLLIPGPSPPGNNIDVYMQPLIEELQELWGGVNTYDASAKENFNVRAALLWTINDYPAYANLSGWSTKGELACP
SCHKDTCSKYLQKSHKYCYMGHRRFLNRYHPYRKDTKSFDGNEEYRRAPIALTGDMVSEEITGFN
>O04673_DAUCA/285-512 transposon family T21 Pfam:PF02992
AHMRWHADHYKEDGVMHHCSDSGEWRQFDRAHPLFSSEVRNVRLGLSADGFQPFGSSGKQYSSWPIIVTPYNLPPWMCSK
EEYMFLSILVPGPRNPKQKIDVFLQPLISELKMLWEVGVETWDTSLKQNFQMRAALMWTISDFPAYSMLSGWKTAGHLAC
PHCAHEHDAYNLKHGGKPTWFDNHRKFLPANHPFRKNKNWFTKGKVVSEFPPPIRTGEDVLQEIESLG
>O07182_MYCTU/221-306 transposon family T20 Pfam:PF02371
PALLEIPGCAELTAAKIVGEAAGVTRFKSEAAFACHAAVAPIPVWSGNTAGQMRLSRSGNRQLNAALHRIALTQIRMTDS
RGQAYY
>O18591_9HYME/37-117 transposon family T1 Pfam:PF01359
TYENIVRKRASCEPGQPAPSTFKPSLSLNKRMLCIWWEVQGPIHYVFLKPNEKLNSERYCQQMDDLNKELKKKRPAVFNR
K
>Q57078_BACNO/1-106 transposon family T17 Pfam:PF01797
MLVTKYRRKCFTSAMLDRLKEIVTDLCQKWEVELLEFNGEADHVHLLLDMYPNIMPSKFINNLKTVTSRLMRKEFAEHLA
EFYWKPVLWTRAYCLLTTGGATIDTI
>O18575_9HEMI/40-122 transposon family T1 Pfam:PF01359
HFTPESSRQSAEWTAYDEPNPKRAKTQQSAGKVMASVFLDAHGIIFIDYLEKGKTINSDYYIALLERLKDEIAEKRPHLK
KKR
>YI11_STRCL/270-354 transposon family T20 Pfam:PF02371
EIIESMPGMGPVLGAEFVAIVGDLSGYKDAGRLASHAGLAPVPRDSGRRTGNYHRPQRYNRRLRWLFYMSAQTAMMRPGP
SRDYY
>Q48910_MYCAV/271-356 transposon family T20 Pfam:PF02371
AIIESMPGMGPHLGAEFLVITGGNMAAFTNPGRLASFAGLVPVPRDSGRITGNLHRPKRYNRRLRRVFYLAALSSLKIEG
PSRAFY
>Q9SIC0_ARATH/292-362 transposon family T23 Pfam:PF03017
RKVSEDIRTVLWKSIEARFALDQPLYSDQCVHHVPLGPNACRVWVDVVIVKDAAVWRQSTEIEYMEDALGT
>Q9K5U6_BACHD/1-252 transposon family T30 Pfam:PF04740
MKFLDVNQHLSELDEHIKVLKSYGDVFEAVEARITRVINMDGAFKGEGAKGVIYNHTHMQLPTIRSIRAFLISFSDTLEK
MKANITEYEPASNGSVSENFWKNQLPKAYDRYEETLEEREATINQATAQVSHILHLGKLQTGDLYNSVDSARKHADTVLE
GLYDLDQAGVELMAQVRTKMEELKATIRQVLDWNMTGGVTMKGVSIMEIGGYFANNATLHEKAPEVKVELLDLNPLVQYA
NDFPLRFKYDTM
>P95897_SULSO/7-285 transposon family T2 Pfam:PF01385
RFRAYADEQTLRALKAQLKLACKIYNTLRWADIYFYQRDGKGLTQTELRQLALDLRKQDDEYKQLYSQVVQQIADRYYEA
KKRFFEGLARFPKEKKPHKHYSLVYTQSGWKILHVREIRKGKKKLITLKLSNLGTFKVIIHRDFPLDKVKRVIVKLTRSE
RIYITFVVDHEFPKLPNTGKEVAIDVGVEKLLVTSDGEYFPNLRPLEKALWKVKHLHRELSRKKFLSHNWFKAKVKLARA
YEHLKNLRTDLYMKLGKWFAEHYDVVVMEGIHAKQLVWV
>YFAD_ECOLI/2-278 transposon family T31 Pfam:PF04754
TESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVI
EHQSSAEKNMAFRLMRYATAAMQRHQDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFLLVDITI
VPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQKE
RLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQG
>Q9Z4C7_9ZZZZ/5-291 transposon family T31 Pfam:PF04754
KNTTTPTPHDAAFRSFLANPDVARDFLELHLPAEYRQLCDLSTLKLEPATFVEPDLHQYASDILWSVKTTGGEDGYVYTL
IEHQSTENLYMPFRMLRYSVAAMQRHLEQHKTLPLVIPVLFYHGERSPYPYSMNWLDCFENPALAAKIYTKPFPLVDITV
VDDNEIMNHRRMAALTLLMKHIRQRDMLMCLDNLVRALQDIQDEEQITVLFNYLLNGSEHVTVEFLQTLAQRLPQHEDSI
MTLAERLKQEGIQQGIQQGIQQGIQQGVQQGALQKAREIARELRNAG
>YHGA_ECOLI/2-270 transposon family T31 Pfam:PF04754
SKKQSSTPHDALFKLFLRQPDTARDFLAFHLPAPIHALCDMKTLKLESSSFIDDDLRESYSDVLWSVKTEQGPGYIYCLI
EHQSTSNKLIAFRMMRYAIAAMQNHLDAGYKTLPMVVPLLFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVTV
MPDDEIMQHRRMALLELIQKHIRQRDLMGLVEQMACLLSSGYANDRQIKGLFNYILQTGDAVRFNDFIDGVAERSPKHKE
SLMTIAERLRQEGEQSKALHIAKIMLESG
>INBN_SHIDY/2-131 transposon family T27 Pfam:PF03400
ALICELDEQWSFVGSKARQHWLWYAYNTKTGGVLAYTFGPRTDETCRELLALLTPFNIGMLTSDDWGSYGREVPKDKHLT
GKIFTQRIERNNLTLRTRIKRLARKTICFSRSVEIHEKVIGTFIEKHMFY
>Q52599_9RHIZ/66-258 transposon family T25 Pfam:PF03050
LSKLGEDVTETLEVIPRQWKVIQTVREKFTCRECEKITQPPAPFHVTPRGFAGPNLLAMILFEKFAQHQPLNRQSERYAR
EGVDLSLSTLADQVGACAAALKPIHSLIETHVLAAERLHGDDTTVPILAKGKTDTGRIWTYVRDDRPFAGLSSPAAIYYA
SRDRRQEHPERHLKTFTGILQADAMALQSAVQG
>Q9SL59_ARATH/80-229 transposon family T24 Pfam:PF03004
GETLWAVMCAYWDTEPAQKRSRTYSKARLSDRNGLGPHIHFSGPKSFQEIQDELEEKLGRIVTIGEVFVETHTKSDGTYV
DRKAELIAQTYEQNVRDRLSQLEAEASVVSDGTSRPRELTNEELTTIFLQSTERDSRGNPYGLGSLEDTL
>Q9R6A2_9RHIZ/1-206 transposon family T25 Pfam:PF03050
MVRIGEDRTERLDRVPARYEVIVTIRPKYACPKGRAGVVQARAPAHLLEGSWPTEALLAEIAVSKHSEHMPLNRQAEVMA
RHGVPIDRTVLADWMGRTGGEIAPVVDHMAKRLLWESTRLYVDETTAPVLDPGRGKTKTGYLWAVLRDDRGWNGSAPPGV
VFHYRPGRKGEYAAEILDGFNGTIQVDAYGGYSHLATSDRMGGDPL
>O68063_RHOCA/25-210 transposon family T25 Pfam:PF03050
TSFSRSSASSSRVGPSEGLTAIGSKEGPNACRSCTDGVVQAPAPDRLIPGGLPSEALVAHVLVSKYADHLPLYRQAQIYA
RQDIDLDRSTLADWVGRAAFELRPVFDALIADLKRSTKLFMEFEGTVALMGPRKPRRTRVPRCSIRGPGKPKPDTSGRWP
ATTALGAARRRLGWPSPKHRAVAGNM
>Y4JD_RHISN/113-318 transposon family T25 Pfam:PF03050
LHRIGETTSEALDIVPAILRVKRTIRPRYACRACENGVMQAPAPARFMDGGMATTALAAHIVVSKFAWHLPLYRQAQIFA
GYGITLDRGTLGIWGTRVAWWLKPLYDRLLAFIRSQPRVFSDETRLPRLDPGRKRTKVCQLWAQAVDDRPWKGPAPPAVG
YIFSESRSAREAERQLASFNGVLQVDGYTAYKTLARHRGKSNSSPL
>gi|117924972|ref|YP_865589.1| (TyrRecombinase_Crypton) phage integrase family protein [Magnetococcus sp. MC-1]
MHKMENPFGDGHCLIANDLNKIDQLLRQDGVAACPADRTHKARSSDAKRFVQWCQQQGVKALPASPETVTGYIEAMIQDK
ALATVRRYVSSISTLHSAVEMCNPAHSPEVRESLRKAADQCERPSKGTRPITREMVQRMVQATLGSTRDLRDVALLMVAY
DTMLRRTEMVALDVANFHFGRDGFATVTCHSEDDLALPTTRCIAPDTVRAVEAWMRASNTSTGPMFRSIDRAGVIGDRLS
DRGLVRAFKRLARQAGLDPEGISGLSCRVGAAGDMMKEGFRLKEVMQAGGWRSPVMVSRYHQQKRALADNEDLAESPLTR
VMLHKPGKRA
>GB:AAC16617 transposase (Mariner_Tc1-element) [Drosophila simulans]
MSSFVPNKEQTRTVLICCFHLKKTAAESHRMLVEAFGEQVPTVKKCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL
LDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWI
FFVSPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKRGETVNTARYQQQLINLNRALQRKRPEYQKR
QHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDE
FYWRGIHKLPERWEKCVASDGKYLE
>GB:CAA29181 ORF 1 (LINE-element) [Trypanosoma brucei]
MSPLAMPATSTWCQGPVPRIIGGSQEPAAFLSWGTLLCSGYGIIQHRDQQRLAGTPFFICRSLGTCKRAISSIIRTKMLV
SGDVEENPGPSLHGMQWNCAGLSQGKRLALHKTLVDERIAVCLLSETRMTPGEAACFSVAGYQHHGIARNCKGGGVSILV
REDLPVETGMTVVGRSEQVHATIHLARGQALTVTSAIIPPKHTFTATDLDTLLTTDGAQLIGADANAHALAWDRASPPNT
KGETLTQWCIDNQFLVYDTGECTWYARHYGESTPDVTLSRNCTVYTWTSLYSPDSDHHHIFFDVIVGDDTDALTRPRLRK
PMYAWLKANWRNFRLKVDELCRKIGREKNVEHLGTAAEQRHHSWTPELAKLDEEIAGCGPSHRREKLVATRKQILDRTTK
KRWSTLCSRLAVSDRCSWHIVKKVYAPRPLTTPAVLVDNAAITDYRQAERFSKLYSSRARRHPDSHPPAPIKTIASEFSP
ITMAELRRSIKLLPSGSAAGPDCLYNEALQHLGRTALNVVLRLFNESLRTGVVPPAWKTRVIIPILKAGKKAEDLDSYRP
VTLTSCLCKVMERIIAARLRDTVESQLTPQQSAFRPGCSTLEQLLHVRAALCRPTHQSRTGAVFVDYKAFDTVDHDKIAR
EMHRMKVSPHIVKWCVSFLSNRTGRVRFKEKLSRSRTFERGVPQGIVLGPIMFIIVMNSLSQRLAEVPLLQHGFFADDLT
LFSRHTERNVINHTLQCGLNVVLQWSKEYFMSVNVAKTKGTLCGCIERHPLTLQLDGERIGADRTPKLLGVTFQCLQGMA
THAAETRRKMDFRILQIAAISASTWGPRRQVLRAFYLALVQAHTMYGIEVWYWDASERSRDLLASAQHKASRIIAGIPHG
TRKEDSLLEANLLPLKTTTLVRSMKFMLMCESRGACLRRGAEEVYHSKHPVRALHSRIMRSYPHLRIEPREHPLETSTVR
HSCRPIFHTQIKPLCADDPDDVKREASEKCTERHFARRGKEPPRREHYELWTDGSVSLGEKSGAAALLYRNNKLICAPKT
GAGELSCSYRAECVALEIGLQRLLKWLPAYRSTPSRLSIFSDSLSMLTALQTGPLAVTNPILRRLWRLLLQVQRRKIRIR
LQFVFGHCGVKRNEVCDEDAKRAADLPQLRDTWIPDIIAYAKRVPKSEEVHENTHRFGITGNHFPTKHKEELTREEETAL
ARFRVGSSRHYGWMLRKINPSVPPQCRWCNPQHAAMGPTIQTAPTVATRTLQRTSEPTKCTECDATYQCRSSAVTHMVNK
HGFVRTDALRRIKYDDTTPAVDIPPEPPPVVAIVPLPSSTRVPMRPQVLHCTICASKFAVPGRLLHHLRTIHGIGSGSFR
VKRGRENEDSLQGDGRAPAAPASQDTRKLPFQCDLCEASFGTHSSLSLHKKLKHKSMMTQDGTVVLVQFPRKRARQGNVD
APGKGEVQCGVCQKVLSCRDSLIRHCKAFHKGEGVELKCSKSTKLCATDSPHTNTSMLVCPTCGRQCASKTGLTLHQKKM
HGMKVERAVTSQRGDCEETSLHLMSCPGLKELRLRFPVEGVCVCRMYVSLKGWRSFSLAVERSRPQVKSSPNVTVIQPTL
PSATPPLLPSVEPAGKAPARRNSLDTLRDRGGMQSTRQQKQKEGERIINE
>GB:AAC16609 transposase (Mariner_Tc1-element) [Drosophila sechellia]
MSSFVPNKEQTLTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL
LDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWI
FFVSPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNTASYQQQLINLNRALQRKRPEYQKR
QHKVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDE
FYWRGIHKLPERWEKCVASDGKYFE
>GB:AAA28149 Tcb2 (Mariner_Tc1-element) [Caenorhabditis briggsae]
MDRNIVRVSREDPQRSSTDIQMVVKTPNEVTPSLRTVRRRLQDAGLHGRRPAKKPSISKKNRIARVAWARAHLHWGRQDW
ANHVFSDESKFNLFGTDGIKWIRRPVGCRFDPSYQLQTVKHGGGSVMVWGCFSGTSMDPLRRIDSIMDRFVYEDILENTM
RPWARSTVGRAFVFQQDNDPKHTSKHIKEWFRRRHVDLLDWPSQSPDLNPIEHLWEHVERHVRGVRASNANQKFDQLQDV
WQAIPMSVIDTILDSMPRRCQTVIDAKGFPTKY
>GB:CAA43861 transposase (Mariner_Tc1-element) [Drosophila hydei]
MSQYSMQKNFRLLQISRSLATMVRGKPISKEIRVLIRDYFKSGKTLTEISKQLNLPKSSVHGVIQIFKKNGNIENNIANR
GRTSAITPRDKRQLAKIVKADRRQSLRNLASKWSQQLAKLSSESGRDKLKSIGYGFYKVCFVITCASYPITYS
>GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) [Mus musculus]
MPPLTTKITGSNNYFSLISLNINGLNSPIKRHRLTNWLHKQDPTFCCLQETHLREKDRHYLRMKGWKTIFQANGMKKQAG
VAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYAPNTRAATFTKETLVKLKAHIAPHTIIVGDFNTPLSPM
DRSWKQKLNRDTLKLTEVMKQMDLTDIYRTFYPKTKGYTFFSAPHGTFSKIDHIIGHKSGLNRFKNIEIVPCILSDHHAL
RLIFNNKINNRKPTFTWKLNNTLLNDTLVKEGIKKEIKDFLEFNENEATTYLNLWDTMKAFLRGKLIAMSAFKKKRERAH
TSSLTTHLKALEKKEANSPKRSRRQEIIKLRGEINQVETRRTIQRINQTRSWFFEKINKIDKPLARLTKGHRDKILINKI
RNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINSLPAKKSPGP
DGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQE
HIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGQYLNMIKAI
YSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEVKISLFADDMIVYISDPKN
SNRELLNLINSFGEVAGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIATNNIKYLGVTLTKEVKDLYDKNFKSLKKEIK
EDLRRWKDLPCSWIGRTNIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFIWNNKKPRIAKTLLKDKRTSGGITMP
DLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFNNWCWHNWLLSCRRMRIDPYL
SPCTKVKSKWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVYKTKRPP
TDWERIFTYPKSDRGLISNIYKELKKVDLRKSNNPLKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFH
LTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWDCRLVQPLWKSVWRFLRKLDIVLPEDPAIPLLGIYPEEAPTGKKDTCS
TMFIAALFIIARNWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFLAK
>GB:BAA07466 ORF1 (LINE-element) [Bombyx mori]
MYANIRTPVTKNLNSPPKNADHAGSSNTDDPNITRSVRRSVGEWESAKADQAIKLKTPTSPTKKPSEAPQKQKIQGFPSK
TAEARACLSKAKLNLENSRNLKTDIKMAVLQAVERLYELVKEAEGKVTRGQKIEEKGTHKEKEAETKEKDKGQDETLNAL
KKKLEENCSLLRENSEKMEELKQMFRSQKATYADVVVSQPGRQPPKCTTLHSIMVSSKDENETGDGILTELRKTASEDEG
WVRVERVRKIKDRKIIMSYRTEEERTKATQRLKKSEGELVVEEIKNKDPLLILYNVLKMHSDEDLQKALRSKNKDLFRNL
NKEDDRIEVKYKKSARNPHTHHVVLKVSPTIWNRALSMGSLHIDIQPVRVADQTPLVQCTLCLGFGHSRKFCKEALPSCS
HCGGPHMRADCPDRLTGIEPTCCNCRKANMTTTAHNAFSRECPVMAKWDNIARRAVEYHC
>GB:AAC13649 reverse transcriptase (LINE-element) [Bombyx mori]
MDIRPRLRIGQINLGGAEDATRELPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAGVYIRNRVLPCAVLHHLSSTHIT
VVHIGGWDLYMVSAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIG
ARRLVVHNADGHLPTFSTANGESYVDVTLSTRGVRVSEWRVTNESSSDHRLIVFGVGGGTTGERDEDEEARSDLRPGEPC
ALRRYRDRGVDWDLFRSRIHERMGSLDLEEPVAALCEKFTGVITRTAEECLGSLKADRTDRGYEWWTPVLDKLRVAQGRA
RRRWQKARRTGGEEEEQSGRVFRDRRREYRRAMHDAETAFYREIAEGGNRDPWGLAYRTASGRRRAPTNVVNGVEYAGRC
SDDVSGAMRTLMWALCPDDYMSRDTPYHARVRIMAALPPSGRDADPLSKDSLRAIIGSLKNTAPGIDGLTARIIKKALPA
AEAEFVAVYARCVVEGTFPPVWKDGRLLVLPKGNGRPLTDPKAYRPVTLLPVLGKILEKVLLQCAPGLTHSISPRQHGFS
PGRSTVTALRTLLDVSRASEQRYVMAIFLDISGAFDNAWWPMIMVKAKRNCPPNIYRMLTDYFRGRRIAVVAGECAEWKV
STMGCPQGSVLGPTLWNVLMDDLLALPQGIEGTEMVAYADDVTVLVRGDSRAQLERRAHAVLGLAEGWASRNKLDFAPAK
SRCIMLRGKFQRPPIVRYGSHVIRFENQVTVLGVSSTIASLSRHAAAIGERASRCFGKMSRVSASAWGLRYRALRVLYMG
TYVTTLTYAAAVWYLRAAVHVVRSVLLRTQRPSLTLLTKAYRSCSTAALPVLAGVLPADLEVTRAGRRMRECEGLARELA
AERRRRIDGDVLVVWQNRWVSEGKGRELYKFFPDVADRKKATWMEPDYQTSQILTGHGIFNKRLADMRLREGHACDCGAV
EEDRDHVLWECPLYDEIRGRMLDGISRSEVGPVYHADLVRDEKNFRLLREFAIHGTRRALRANHEDCLATKNVGDVSSPR
TGRMLVE
>GB:AAB04627 reverse transcriptase (LINE-element) [Chironomus tentans]
MDCNQQINVLYWNANGLTDKMLAFLDYLSTQKVDVACISETFLKPNSKIDSHPDYVIHRFDRVDRPKGGVAIIVKRNLKH
QLQPSYNTKLMECIGIKVFITDSVSCHILSVYLPGGSKGKEIDQHLRDDINKITNIRGNYYICGDFNAKHREWNCNVANK
AGTILQDMSGEFMIYYPDSPTYYPEDPKKSESTIDLMLSNSNLETTELNCTEAMSDHCAVYFQIKTSKIDRTENTVYRYD
YKNANWKKFKTYISRRIEENIGENTCNSVEEIENHIKTLSELIIEARNSSVKKKKINFESTKLTPEIKDLIKTKRTLRRR
WQHSRENQIKTELNYLQKVINEKIKELKNINWNKRLSEIKTSNQTVWRIAKLCKKGSKSMPPLTSSGKIYITNKEKASVL
SEHFREAHENPLEQNNIQHTQEVNNTVKEALKQDNEDDPELTDVNEIVSIIRNLKNPKSPGLDDVNNILIKNLPPKGFEY
LKFIINSCLKLNHFPKVWKHAKVIPIPKPGKPTNEVSSYRPISLVSSISKILERILLNRINDHLEDNNIIPNQQCGFRTG
RSTSHQLIKVIKTAKENINNKKSTGMIFLDVEKAFDRVWHNGLLYKMLKLRFPLPLIKTVRSFLSERTFSVFIKGQFSEI
KEIKYGVPQGAVLSPTLYNIFTYDIVRETTNNIALFADDTALYHSAENSADIVTQLLHTGRKVQQYMDKWKINLNKQKSQ
AIFITNRYSKQLPRNNIKFLNENIKWESEANIWEW
>GB:AAB41224 ORF2 (LINE-element) [Rattus norvegicus]
RKQETNRLGNKTKRMKAHKHNLTSKYEYKGSNNHYSLISLNINGLNSPIKRHRLTNWIRNEDPAFCCLQETHLRDKDRHY
LRVKGWKTTFQANGQKKQAGVAILISNKINFQLKVIKKDKEGHFIFIKGKIHQDELSILNIYAPNTRAPTYVKETLLKLK
THIAPHTIIVGDFNTPLSSMDRSWKQKLNSDVDRLREVMSQMDLTDIYRTFYPKAKGYTFFSAPHGTFSKIDHIIGQKTG
LNRYRKIEIIPCMLSDHHGLKLVFNNNKGRMPTYTWKLNNALLNDNLVKEEIKKEIKKFLEFNENEDTTYSNLWDTMKAV
LRGKLIALSACRKKQERAYVSSLTTHLKALEQKEANTPRRSRRQEIIKLRAEINQVETKRTIERINRTKSWFFEKINKID
KPLARLTRGHRECVQINKIRNEKGDITTDSEEIQKIIRSYYKNLYSTKFENLQEMDNFLDRYQVSKLNQEQINQLNNPIT
PKEIEAVTKGLPTKKSPGPDGFSAEFYQTFIEDLIPILSKLFHKIETDGALPNSFYEATITLIPKPHKDTTKKENFRPIS
LMNINAKILNKILANRIQEHIKTIIHHDQVGFIPGMQGWFNIRKTINVIHYINKLKEQNHMIISLDAEKAFDKIQHPFMI
KVLERIGIQGPYLNIVKAIYSKPVANIKLNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARPIRKQKEIKGIQIGKEE
VKISLFADDMIVYLSDPKSSTREQLKLINNFSKVAGYKINSNKSVAFLYTKEKQAEKEIRETTPFIIDPNNIKYLGVTLT
KQVKDLYNKNFKTLRKEIEEDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPIQFFKELDRTICKFIWNNKKP
RIAKAILNNKRTSGGITIPELKQYYRAIVIKTAWYWYRDRQIDQWNRIEDPEMNSHTYGHLIFDKGAKTIQWKKDSIFSK
WCWFNWRATCRRMQIDPCLSPCTKLKSKWIKDLHIKPDTLKLIEEKLGKHLEHMGTGKNFLNKTPMAYALRSRIDKWDLI
KLQSFCKAKDTVVRTKRQPTDWEKIFTNPTTDRGLISKIYKELKKLDRRETNNPIKKWGSELNKEFTAEECRMAEKHLKK
CSTSLVIREMQIKTTLRFHLTPVRMAKIKNSGDNRCWRGCGERGTLLHCWWDCKLVQPFWKSVWRILRKLDIELPEDPAI
PLLGIYPKDAPTYKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIKNNDFMKFVGKWLELENIIL
SELTQTQKDIHGMYSLICGY
>GB:AAF20019 pol-element protein (LINE-like) [Aedes aegypti]
MPSVSTLFAIQWNMNGNINNLPDLELLVRDQQPIILAIQETHRINTNRLNHSLQKRYSWTLKCNENIYHSAAIGVLPTVP
FSPLPLNTDLPIVAVKLEYPFPMTVISGYLPNGNIPDLKLRLFNALQSLSSPILVMWDVNGHHPEWGSVSPNDRGSLIMD
VAEKLDLVILNDGATTFTRGQRNSAIDVSLCSPSIVNRLLWTAKEDPMGSDHHPIFIHIDEQPQATSRRPRWKYDQADWS
HFQTLIDTEVSDKPPDNIEGFLSVLHQAASTSIPRTTPNPGRRSLPWWSPDIKKVIKERRKALRAAKRLADDHPEKSKLT
EIYRSKRNECRQRIRDAKKKTWEDFLEGINANQTASELWNRVNALNGKRRATGMTLRLPGGLTRDPLLIANALADHFASL
SSLDRYGRNFILKNQASIDSITNLVIPEDNTPLRINSPFRMEELNFALRHCKSKSAGPDDLGYPLFQHLSIVSKATLLDL
LNKTWIENTLPKSWTHSLVVPIPKHGKAATSPGDFRPISLTCCASKILERMVNRRLIRFLEDNQFLDHRQHAFRPGHGAE
TYFTGLGDVLQDAMGKGLHADMASLDLAKAYNRAWTPHAIRRLADWGLCGHILHFLKNFLKGRTFQVIIGNNHSSIRAEE
TGVPQGSVIAVTIFLVLMNNIFEALPKEIYIFVYADDILLVVIGRTLKFIRRKLQAAVSAVARWAANSGFDLSAEKSVIS
HVCRSRHRVLQTPVMVNGCPIPCRKTMVILGVQLDRELRFDAHLNAIKRNYQTRINLLRTLSKPHKSSNRDILVRIAKSI
INSRLFYGIELFGLAGDTLITRLAPTYNQSIRIIAGLLPSTPADAACVELGVLPFRYQATETLCCRTIAYLEKTTGDHEV
FLLREGNRALDSLAHQELPPVEQVHWVGARRWDAPDFLVDTSVSKRFRAGDNSPAMRSHVTELLASKYRNYHHRFTDGSK
YLDRTGFGVTDIDKSYFYRLPDQCSVFSAEAAAILLASTTPAPKPICVISDSASVLATINSSSTRHPWIQAVQKNSPSQT
VFLWVPGHCGIRGNVEADHLASKGRSGRLFTRLTPGMDLKNWTKSQIRSSWALEWVNLRDKFIRKIKGETKRWIDTNNRR
DQQVLSRLRTGHTHATHNMGNERPFRKKCIVCNTTMSVEHMIINCPCFQAPRERHNIPDSIRDALSNEASSEAAIISFFK
DAGLYNKI
>GB:CAB51372 transposase (Mariner_Tc1-element) [Pleuronectes platessa]
MKTKELTKQVRDKVVEKYEAGLGYKKISRALNISLSTIKSIIRKWKEYGTTANLPRGGRPPKLKSRTRRKLIREATRRPM
VTLEELQRSTAEVGESVHRTTISRLLHKSGLYGRVARRKPLLKGIHKKSRLEFARSHVGDTANMWKKVLWSDETKIELFG
LNAKRYVWRKPNTAHHPEHTIPTVKHGGGSIMLWGCFSSAGTGKLVRIEGKMDGAKYREILEENLMQSAKDLRLGRRFIF
QQDNDPKHTARATKEWFGLKNVNVLKWPSQSPDLNPIENLWQDLKIAVHRRSPSNLTELHLFCQEEWTNLSISRCAKLVE
TYPKRLAAVIAAKGGSTKY
>GB:AAB40345 ORF1 (ISa-element) [Streptomyces lividans]
MPAPRKYPDELRERAVREVRTTGRPIAHVAKDLGIHKEALRGWVRQAEADAGERDDRLTTAEHEELKQLRKEVAELRRAN
DILKAASAFFAAELDRPRTRPTR
>GB:AAA98137 transposase (ISa-element) [Bacillus thuringiensis]
MVYEICGCTSLKYSYQRYEKYTARTRKMIKKVRSIHVKHKEFGYPHMKIPLQEEGYFINHKKVYRLKMGLNIQSIIRKKR
CFFKGNYSKFFLNVLNREFKDRQQNEALVTDITYLQFQEEFRYLSVVQGVYNNAVVSWKISTRNDNELVLDTIEILAQKR
DVRGTILHSDQGFQYTSHAYNKRLSDLSIIGNYSRKGNCHNNVCIESFFSHFKSEMLYLNHFKTEENLIQANEKYIYFYN
YRRFKKRLNHQASIESQISMTA
>GB:CAA26518 transposase (ISa-element) [Lactobacillus casei]
MTYSRNRYDQDFKKNAVHLSFNSSKPVKIIASELGVPESALYRWRKLYTEDGKQTPFASLEAENRALKRENAELALERDM
LSRRLLCQSPEVTPSDKYAFMLRETSVSVVRWARLLDVSTSGYYAWRRALPKRNAKERQYRQRIKHFFDQGQGTYGPKRI
CGLLRKNGNKASYHRVARLMADAGLYSTLRCRHPKSLTDSRLARQGDYPNLVKHQSFKPFEALSSDITQTTTSEGKAYIC
QIRDLNSNLVLAHQISNHMDTDLVLATLKQAHQRWALPETCIFHSDRGSQYTAKEVTKLVNQYHWQRSFSALGKPGDNAW
SESFFAIMKKELIYQIQFKDINELRAQVFAYIETFYNRVRVQARLDYLAPVAWLSLYDQASQKVA
>GB:CAA65663 transposase (ISa-element) [Enterococcus faecalis]
MTYTHLTSNELAMIEAYYNNHQSVAKTAVLLNRSRQTIHKVYQFFKTGHNALDYFNQYKKNKTRCGRRPIVLSDEQTEYI
QKRVVQGWTPDVIVGRAEFSISCSMRTLYRMFKQGVFEVTHLPMKGKRKANGHKETRGKQSFRRSLRDRGNDYSKFNQEF
GHLEGDTIVGKKHKSAVITLVERLSKVIITLQPEGRRAIDIENRLNQWMQSVPKHLFKSMTFDCGKEFSNWKSISNINDI
DIYFADPGTPSQRGLNENSNGLLRKDGLPKQMDFNEVDESFIQSIASKRNNIPRKSLNYKTPIEVFLSHICKEELSNLI
>GB:AAF43699 transposase (ISa-element) [Mycobacterium avium]
MPKEQSPGKPTTRRYSAEEKAAAVRMVRTLRAELGTEQGTVQRVARQLGYGVESVRTWVRQVDIDEGLAPGVTTSESKKV
KELEQEIRELKRANEILKRAASFFGAELDRQHKKIVDFIDDNRGEFGVEPICTVLRSAGLQVALSTYYDAKARVPSARAL
RDAVLGPALCQLWKDNYCVYGARKLWKTARRDGHDVGRDQVARLMRAAGIEGVRRGKRVRTTKADPAAARHPDLVHRNFA
AAAPNQLWATDLTFVPTWAGVAYVCFIIDAHSRMIVGWRVASHMRTSMVLDALEMARWSRGTTLQDLICHSDAGSQFTSI
RYGERLAEIGAVPSIGTVGDSFDNALAETVNGYYKAELIYGPARSRPWKTVEDVELATLSWVHWHNTSRLHSYLGDIPPT
EFEAAFYDAYRTDQPLIGIQ
>GB:CAA29384 ORF A (ISa-element) [Shigella sonnei]
MSRKTQRYSKEFKAEAVRTVPENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLE
RDILKKATAYFAQESLKNTR
>GB:CAA44764 Uhu  (Mariner_Tc1-element) [Drosophila heteroneura]
MGKRTTIEQRNLILEHFKIGYSHRQIAKMVNLSTTTVFNIIRRFVDENRIEDKGRKAPNKIFTEQEDRRSIRKIRENPKL
SAPKLTQQVQDEMGKKCSVQTVRRVLHNHDFNARVPRKKPFISTKNKGTRMTFAKTHLDKDLEFWNTIIFEDESKFIIFG
SDGRNYVWRQSNTELNPKHLKATVKHGGGSVMVWACISAAGVGNLVFIEPTMDKNVYLNILKENLLQSAEKLGIRRTFRF
YQDNDQDNNQA
>GB:AAB33090 transposase (Mariner_Tc1-element) [Fusarium oxysporum]
MPRGKELTPSLRSRICELKKQGYSYSQIHKHFPYIPLGTIKTTCRREAQRGAENTTLPRSGAPRKPHEEQRDQIYDTVIT
DPHVTTRDLLDSVDNVIKKRSLRYLLREMNKRKWIQKKRVALTPLQARKRLDWAIRYQGIDWRRVKWSDECMVRRGQGMR
PIWTFLSPREPYAYRMFKKLGGRSCRQMFWAAFGHRSRTPLVPLVGKLNAIGIYELYSFILPWFLQSGDIFMHDNASVHT
ARIVKALLEELGVDLMTWPPYSPDLNPIENLWALMKAEIYRLHPELTHTEDTVATQHALVLAAMEAWDNIEDRVLKNLCE
TMPNRVTAVITAEGWYTKY
>GB:CAA44763 Uhu  (Mariner_Tc1-element) [Drosophila heteroneura]
MGKRTTIEQRNLILEHFKIGYSYRQIAKMVNLSTTTVFNIIRRFVDENRIEDKGRKAPNKIFTEQEKRRIIRKIRENPKL
SAPKLTQQVQDEMGKKCSVQTVRRVLHNHDFNAQVPRKKPFISTKNKGTRMTFAKTHLDKDLEFWNTVIFEDESKFNIFD
SDGRNYVWRQSNTELNPKHLKATVKHGGGSVMVWACISAAGVGNLVCIETTTDRNVDLRILKENLLQSAEKLGIRRTFRF
YQDNDQDNNQA
>GB:CAA63547 orfB (ISa-element) [Escherichia coli]
MKQLIASIFHEHRGCYGYRRIHCELQKRGLKFSGKTVRKLMQQLGLKSPVRLKKYRSYRGNMGLAAENILQRQFKAEAPC
EKWVTDITEFRAGGQKLYLSPILDLFNGEIVAWETACRPTEELVKRMLNKGLESLAEGEKPLLHSDQGWHYRIKSYQSAL
ADRGLVQSMSRKGNCLDNAVMENFFGHLKEEMYYRRDYRSVEELENAVNEYITYWNQKRIKLSLGGLSPVEYRTEYQKAG
>GB:CAA44989 transposase (ISa-element) [Bacillus thuringiensis]
MNLSIQDELQLFSEELYHHLTPSLLDKLAKELGFVKRKRKFSGNELATICIWVSQRTASNSLVRLCSQLHAATGTLMSPE
GLNKRFDGKAVEFLKYIFSVLWKSKLCETSAISSATFMYFQRIRILDATIFQVPKHLAHAYPGSGGCAQTAGIKIQLEYD
LHSGQFLNFQVGPGKNNDKTFGTECLVTLRPGDLCIRDLGYFSLEDLDQMDQRGVYYISRLKLNHTVYMKNPSPKYFRNG
TVKKQPQYTQVDLEYLMNTLKPGQTYEIKEAYIGKDQKLFSRVVIYRLTEKQLQERRTKQSYTESKKGITYSKKSKRLTG
INIYVTNTPWGIVPMEQIHDFYSLRWQIEIIFKTWKSLFQIHQWQNIKQERLECHVYGRLIAIFLCSSTMFKMRQLLLHK
RKRELSEYKAIGMIQDHLFLLFQAIQKNIQAITKIFIRLFTLLKKNGRKSHRYEKKTVFDIMGVIYEYSGFKKQQKVA
>Helitron-4_Mad_hel#RC/Helitron 2265-6692 via genewise with Helitron4_OS_hel, 2 introns (3216:3298, 3483:3621) [Malus x domestica]
MFPFEADDFNLINENEIQPNEDVPPRQHXMGTRPIHNCARNFNENMGIPRFHMPNPTTCPDCHARLFSHETFEMCCLRGK
LALPLTPSPPEMTELFCNQSAQGRHFRQNIRAYNHIFAFTSMGVHVDENLATGRRGIYTFRAQGSIYHKIGSLLPIGDSR
PRFLQMYIYDTAHEIDNRMRESEALNRDVVEKIQQILNQYNPFVQTFHHLAQRQDLQSCRLIIKEQPANQRQYCLPSASQ
VAAIIVGGEGSENIRGRDIVVQTTDGQLKSIKDCVGYYDPLQYPLLLPYGTYGWDVNTRNNTNRKVTCCDYYSYVLQIRQ
HDESLLLRGGRLLQQYVVDNYVKIESQKLRWMRDNQHTIRSEFYRGLQDSLIAGQNNAGNIGRRRTILPSSFVGSPRDMY
QRYQDAMTLVQKYGRPDIFLTMTCNPNWEEISDELLPGQAPQDRPDLLTRVFRAKFEQLKNDVIKKSVLGRVLAYVYVIE
FQKRGLPHVHMLLMLEENDKLNSPDDYDRMVRAEIPIPNEEPELYGAVLRHMIHGPCGIHNSRSPCMKRGSCKRNYPKPF
APTTVQGNDSYPVYRRRDNHNPVPLDQNARIMVDNRWVIPYNSWLLLRYDCHINVEICCSIKSVKYLYKYVYKGPDRVAF
EVHPEPIQDEIKQFVDARWVCAPEALWRIFKFVTNRLYPSVERLQIHLPEGQTVHFYPHQRVSDILADDTNSMTMLTEFF
TKNTTCPEARRYLYREFPERFRWSQRDKVWSERMNNHKVIGRIYAVSPNEGEKFYLRILLNHVRGPTSFxDLRTVNDIVQ
PTFKKAVEQRGLLEDDDSIRQCLREASNIRMPSALRRLFVTILVYCEPHGVRRLWDEFHSFMVEDYSVSSTINNTSILNK
LLQDLNGLLVQHSKSVSDYDLPQITQDCVRDNTLPRIIQDEVSLDISEADLNAVHNLNEDQMAAYNSIVSAIERRDNAIF
FVDGPGGTGKTYLYCALLATLRSDGHIILATATSGIAATILPGGRTTHSRFKIPLSPDASSTCSISIQSDLAELIRKTSA
VVWDEAPMAHRFAFETLDRTFKDIIGVDLPFGGKVMIFGGDFRQVLPVVPKGTRSELMQASMINASFWGHVKIIRLRHNM
RSINDQDFSEFLLHVGNGEQETMIDDMMQLPSSMVIPWNGEESIVQFVNEVFPDLECHVCDSRYLVERAIITPKNEDADK
LNKMIIDKFPGTEHILYSFDSVEDDVRNLYQQEFLNSISPGGMPPHQLTLKKGAPIMLLRNIDPKMGLCNGTRLACHGAY
NNLIDAEILSGQFAGTRVFLPRISLKTTESAGLPFEMMRKQFPVKLSFALTINKSQGQTIPNVGIYLPDHVFSHGQLYVA
LSRGVSASTTKVLVKKGELHGHEGVFTRNVVYKDILLPSNST
>Helitron-3_SBi_hel#RC/Helitron 1399-5840 via genewise with Helitron4_OS_hel, 2 introns (2289:2431, 2635:2737) and 4 frameshifts. [Sorghum bicolor]
HRLRKVPDCSYCGAMRFQYETPGFCCRKGKVQIHIPEVPAELKRLFTSQVDDDAKYFRKHIRYINSHFAFASLGVTLDRR
YNSPEGTGIYTFRVHGGLYHRLRPPGARXxSARHLQLYFYDTEDEALSHRVKRSPDLDINLIRNILAILQDNPYVHTFRR
NGAFPNLDDYRIELNTNVTPDQRRYNAPTASQVAAIWMEGNDPQRCFDRSVVVYGKTDRRPQYIRACHGCYDPLAYPIYN
PRGETGWNKFMPYSGDPVTPHLQPRLLLIMLITWMTGQPVVIKVLSPNNIIYCYNTAQSTRYVTAREYYCFKLQVRRGIF
NIVLFGGRLFQQWAVDMYIKIESMRLDWYSNPENQKLIRAELYQGLVDVISAGETQGSKVGKRIVLPRSFPGCDRDMQQR
FLNAMAIVQRFGKPDYFITMTCNPYWEEITSNLEPGQEPQDRPELVARVYRAKLRDLKDLLIKRKYFGEVAAYVHVTEFQ
KRGLPHEHFLLIMKSGSKLTTPDAYDRVISAEIPDKDKYPELHDLVISHMLHGPCGVLNKNCACMVDGECRFQYPRQFCE
ATQQGKDSYPTYRRRDDGRRVRIRRAELDNRWVVPYNPGLLMRYNCHINVEACSSIKAVKYLFKYVYKGHDQASFSVNAD
QNDRDDGVINEIQQYRNARYISPPEAVYRIFGFPMFGVYPAVLQLQLHLPGMQSVTYNEEENLEDVVSRPGSNRTTLTEY
FSKNREDRAARKILYREFPEHYRWITGRKVWQGRKQASAQIGRIVYANPAEGERYFLRVLLNHVRGATSYEDLRTVAGVT
YSTFREACEKRGLIETDQSIDDCLTEATTFQMPCALRRLFATILVFCEATNIRGLWDKHKDALGEDFSRDNNNTSIVEQM
VLRDIRDMLHSMGKDIRDYGLPPICDEGPSSIDMMKEVREEQNVSVDQDHLDIFDSLNKEQREGFDEIIQHVFANKSQVF
FVDGPGGTGKTFLYKALLARVRXRGLIAIATATSGIAASILPGGRTAHSRFKIPIKIGDNSMCSFTKQSGTAELLRRASL
IIWDEVAMTKRQCVETLDRSLQDIMECALPFGGKVMVFGGDFRQVLPVVTRGTRAQVTDATLQRSYLWDKIRKIRLSQNM
RAQSDPWFSEYLLRIGNGTEETIGDDYVRLPDDIVIGYTDTEVAVNKLIQDVFPSLEEHATSAAYMSSRAILSTKNEHVD
xLNAMMIERFPGEEKVYHSFDTVVDDPQNHFPIDFLNSITPNGLPPHELKLKINCPVILLRNLDPXNGLCNGTRLMVRAL
QDNAIDAEIVGGQHVRKRVFIPRLPLSPSDDISLPFKFKRKQFPVRLSFAMTINKSQGQTIPNVGIYLPEPVFSHGQLYV
GLSRGVSRSTTRILAKPKEDLDPTGKSTKNIVYKDVLNW
>Helitron-4_NVi_hel#RC/Helitron 2-3522 Incomplete N-term, via tfasty with Helibat1_hel, 3 frameshifts and 3 stopcodons. [Nasonia vitripennis]
CSLMLLKELDNFFRQVNIYAKSYKMMHEVEMEEQNRLKNNNVEFNSTRIIMYLTRNSNHDKRRYNAAKCDEVAVVFVGEN
GQPPEDRDVCIYSKHRAPNIPYISKHVDPMSYPLMYPNGGFGWMPNMKNKNNKNNISMLQFYCHKFSIRNDFNPYLNLGK
LTQQYIVDAWVKVEGSRLFFLNKNQHQLRTDLYKGVMDHLKNKSNDDNVKIGKMVILPSTFSGSPRSLQQNFLDSMTIVQ
KYGKPDLFITMTCNPKWKEIKQNLRKNESAIDRPDLVAKVFNAKVNELLNEILKKNIFGKCIAYTYVIEFQKRGLPHMHL
LAFIHKNHKLNNADDVDKLISAEIPDEMKYPRLHNIVKQSMIHGPCGKNNLNSPCMDSKTKKCTKNFPKxFNxQTTFNNT
GYPLYRRSNNGKQIRFNKNNIADNRFVVPYNPYLLLKFNCHINVEVCSTIQCVKYLFKYCYKGHDCAFIKMSQGNNENEC
KEENFNYDEIKQYLNTRYVSPPEAMYRLLQYAMYVLSHVIYRLAVHLKNEQFVFFKEGSEEELINKNLNTTLTAWFELNA
NDPQARQYLYVDIPYFYVFNEKTKKWTPRKRVWKPIISRMYFVNPKDRERFFLRLLLLHVKGAQSYEELKTLENVTYATF
HEVVVARKLITTDEEWDKCLEEAIKVEFPKALCNLFGYICVFHHPVNVKELFEKYKAYFYSPLLTKEIRENISLKHINSI
LTSHGYTLTDFNLPKFSEDVEETNYEEFYATNKIENDSLYNISSLTNKQREIFDAVINSVINKANQVKCFFIDGPGGSGK
SYLLNTIITHLNKEKISVLPVAWTGIAANLLINERTSHVIFKLPSLNINEDSTCNITPNSIYRKNLKNVEVIIWDEITMT
SKHAFQAVDKLFKDLCNNDIEFGGKVMIVSGDFxQTLPVVKHGNRTKIIENCVKNSHLWSKFQIMTLKDKMRVSNCDKEF
KQWLLKIGDGKYSNKFEMDNDITLLPTELLSTSDIIMEIYGDCFDNNNANKLCERVILAPKNNDVLKINNNILNRMQGDV
REYLSVDSCEDDNKEMLPIEFLNSLTPNGLPPHKLRLKVGAVIILLRNLNLNDGLCNGTRLIVRKMMQFCIQAEIISGKQ
FGKVVLIPRIDLTSSKEEIPFDMTRRQFPVRLGYVMTINKSQGQTFNKVGVYYM
>GB:AAC82604 Prgag-pol (gypsy) [Drosophila melanogaster]
MSWAHNYRKVKVEYESEDSWEEEQVGQALGRPLDSATVDITMDPNQIQALIDNAVRQALSQQQSQFQTQLNSLAARVQSL
QVEAPQIKIYEKVSVNPDVRCDIPLDIIKSVPEFSGTQDEYVAWRQSAIYAYELFKPYNGSSAHYQAVAILRNKIRGAAG
ALLVSHNTVLNFDAILARLDCTYSDKTSLRLLRQGLEMVRQGDLPLMQYYDEVEKKLTLVTNKIVMTHEQEGADLLNAEV
RADALHAFISGLKKALRAVVFPAQPKDLPSALALAREAEASIERSMFANSYAKAVEERAHSGANGKSRFQGKPNKEEQGQ
DRNPHFTKRPKNNGQTNKDTQAQAPQPMEVDSSSRFRQRTEHYQNHPNESNAFKRRNSSERSTGPRRQRLNNVVQEAPKQ
KDPKEEYEKTAKAAVEEIDSENEYAPSDDSLNFLRGRSRLPFIERRLAGRTLKMLIDTDAAKNYIRPVKELKNVMPVASP
FSVSSIHGSTEIKHKCLMKVFKHISPFFLLDSLNAFDAIIGLDLLTQAGVKLNLAEDSLEYQGIAEKLHYFSCPSVNFTD
VNDIVVPDSVKKEFKDTIIRRKKAFSTTNEALPFNTAVTATIRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRP
SRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDR
EKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVS
QEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSV
SKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYA
TNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQN
LNALQNEPQSDAATIHSELSLTYTVETTDKPLNCFRNQIILEAARFPLKRNLVLFRSKSRHLISFTDKSWLLKTLKEVVN
PDVVNAIHCDLPTLASFQHDLIAHFPATQFRHCKNVVLDITDKNEQIEIVTAEHNRAHRAAQENIKQVLRDYYFPKMGSL
AKEVVANCRVCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFSTDRKLFLTCIDKFSKYAIVQPVVSRTIVDITAPLLQ
IINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLDKKTNDTVELILRA
TIEYNKTVHSVTRERPIEVVHPGAHERCLEIKARLVKAQQDSIGRNNPSRQNRVFEVGERVFVKNNKRLGNKLTPLCTEQ
KVQADLGTSVLIKGRVVHKDNLK
>Candystripe1_SB_18550-19755#Unknown [Sorghum bicolor]
YCREQESEVQASQPPGCRRRNRKPAQWPTDKIVVREITENGMPTELRAERRMKRLAGLIARQRLPLTLLSFDALTETQRE
KLFQDYVQPWLEFEEPLQAKASNMLMRMVNKSWRTHKSDLVRNFVNTGLDPLKKHPYIQLEDWETFVSLQETDEAKERSE
FYKKLRAKNKNDHCLGTGGYATALRKWRKEDLELAAKGLSNPWHKCPEGRPRNYLRAHGKLVMTPEGFPKIQWLSKSAEA
VSQQVVEKQAELESLGLTNKLVRDKDVLSQVLGKEQTGRMRGVSSYFGWKFWLNYEDMYRKRSVQMWIRMPLKKKFAGRY
LEMSLPCYVHKELICLTCPPTLICLTCPPTLICLTCPPTLICLTCPPTPFPLWVLRTTALPQALMRSATMYSWTDLVEMA
IHIQILWIFSQSQHIVHL
>Helitron-3_PTrit#RC/Helitron 3651-7752 via genewise with Helmet4_hel, 2 introns (4294:4364, 5415:5469) [Puccinia triticina]
SLDFQQLTRMYNNALSFTSLGANIDYSVAGPMGVNVFKISGALTHWISSLQPTTDNAGFCQIYVVGNRGIEEAQFRVTQA
QGRGGNAGLAARMNPDLVLELMDLLTEINPYAQRFRLAIEVLERAGAKTLKLQGVPTPGADPKRYNCPTIDEVALVVQGN
GDIVDERQILLHRHDDGFEFISNLHSAYLPLRYPLFFPYGEQQWDNLYQANTARVDNRKVGSLEWFSFMLFRRRKKFSPI
LAGRSLFQEILVDMYACVENQRTSFIVNNQSKLKASQYNKLVNSLENEKTPSGRTVILPSTFIGSPRCMQQLYHDAMALC
RKFGPPSYFITMTANPNWKEIVDETPLAEKSFDHPTIVARIFYLKMKELIFQLVKLERFGRVVAYVWTVEFQKQGLPHLH
LMITVDKSDQPVTPEEIDRMISAELPDPVTSPVLHKLVCEFMLHGPCESRPCWNGKTCKSGFPKPFSERTINVDGAYPVY
LRRNNGRTVKKHASTFDNGSVVPYSPYLTRMFECHINVEVPVNTTAIKYLYKYITKGHNRLSLAIDSNDEVKSYIEGRYI
GPCEAAWRLFKMPLSDRWPSVTRLGIHEEGEQLVYFENQEGLEGQINNGKATQTTLTGFMLLNLEDAVGADGRRARDLFY
KDIPAYFWWNKADKCWIPRKTKDECVGRIFSVSYLAGERFYLRVLLLHCRSFTTFVELRTIDGEVCENYQEACNVLGLLV
NNFLYDEALREAAIIRTGYQLAQMFAIICVHSPPSDPLKLLEDHYLSFTDDQSRIDMRQRYSKRLNDAERKSYXLFRLED
ILRGMGNTLTSCGLIPSKREAKMLENMKADEDECEDISVTAARLSKDERKFNRRQRCFYMKVKNALKKRCQGLFYLDGPG
GTGKTFLLNSLIDLATINEFDKVVVASSGVAALLLKFGQTAHSAFKIPIDTPVGIDCPIDEDTYLGMKLKKARLIVWDEV
VTIHKNAIDAVNRTLKRLCDSDEDFGGKVVIFSGDFRQILPVVKYNEFPPAYNSTIRSSTIWENISQFGLDENMRLADAI
ASGDGQKNIEFASSLLLLGEGKRQKSDFAIIKLWHISVKSLKSRDEMRSALISFVYGDMDILRPADDATTYLNERCILAP
LNKDVGKINDEVLDKLQGDPVTLTSIDTPDPDSISSLPEECLNKLSFLGFPEHKIRIKAGMPLVIIRNMSIGAGICNGSR
IRVVDFGLGFIRGRLMSGPCAGDEVTLPRIKLQNKSNARSGLSFFCYQFPVAPAYAMSVNKSQGQTLNKVGVYLESDVFS
HGQLYVAVSRVSNVNNLLVVKPDSRKGIVNVVHKSIFKPLPTRYV
>Helitron2_OS_hel#RC/Helitron multiple exons [Oryza sativa]
MAAVGVSFVSLLNAVAWHCRLPSVSYLWELDGNDILLAGVELALPSDESPSKTVSKFFWIATSDQPIVSHEMVAHQAVRF
LFAKYGFAVHDYNLQTLLLYRQIAASAVDAALTASTHLARFRARYGPMDLSFLVFGLCLPPFLSSNLPSLGFSLYTMSGS
SSQRVQRARESRTRRRASIGQGFLQAPVFSNVSPTAPRLTTVLPGLSGSIPSVPKPALSLPTISDVGVESQTGSIGSTSC
PVHDSQPAPSRKRTLLDVPRHAATANRERRRLKRAGGDSGHLLQKILDGPVPTLDDVLPLPKDYIASLKALCPERSYYGG
PSHECPYCGAAFWYQERVKRDSAVTQRRIVYNLCCRAGKISLPELRFPPAMLANLLRFDGDRRSRRFLRQIRSYNSLFAF
TSLRADVDKSINNGTAPCVFKINGIVHHRIGSLLPQQGAPPKFAQLYIYDTENEVSNRMRVFDKESSTDEPDPFIVTELG
AMLDEHNDLVKSFRFARKRLKDHGDEKIALRLLGCNSKDEVQYNLPTSGEIAGIIVGDYSNDKYTYDVVVQSCDSRLRRV
SALHPSYMALQYPLLFPYGERGFHLDMYSTVEGSRLKFIADNQPDLRSECVQGIADAIDHGLESGDSVGQKYVLPSSFTG
GRHYMVQNYQDAMAVCRVFGSPDLFVTFTCNSKWQEIYDALLFEPGQVPSDRSDMIVRVFNMKVNEFITDIREGKTFGPV
LAVLYTVEFQKRGLPHIHCLVWLAASTTDFNAATVDGFSSAEIPDVFTDPLGYALVDEFMIHGPCGEKNKSCVCMKNNQC
SKHFPKSFQDETIMDEFGFTVYMRRNNGRYVVKNGIKLDNRWVVPYNMKLLKKYQAHINVEWCNKSNMIKYLFKYVTKGS
DRTKVYFETTGNTANKPTDSNAAPRNEIDEYINARFLSTCESIWRTLEFDIHYRVPAVERLAVHEWFEANKKHSKARHLT
YCDFPKEWTWDNSARCWRPRTPVEKIGRMYYINPVAGELYYLRMLLMIVKGATCFADIRTYEGVVYPTFRQACEARGLHE
NDNEWHLLFDEAIVSASSYQLRQLFVTVVMFCSIGNVRSLFDKYWTYFTDDIQHRVRKMLSNPSYVIPHDRLLSLLIKEL
KSVFANSGGNIDDYDLPQSTARTDDDSGNRMVNEELALDSVALAAHADSIIPKLNSDQKRVFDTIMCRVNESKPGFFFVY
GHGGTGKTFLWNALISKVRSEKKIVLAVASSGVASLLLPRGRTAHSRFKIPIDINENSLCTIKRGTMLAELIQKTSLIIW
DEAPMTHRRCFEALDRTLRDLLSEHAPSNGLVPFGGKVVVLGGDFRQILPVVRKGSRASIIDASITNSPLWSHAVLLKLT
VNMRLLQCNLGEQQQQELEKFAQWVLALGDGKLPVSKRNDESEATWIDIPDDLLIKTTGDKIHSIVNEVFPGFASKYTDR
SYLASRAIVCPNNSTVDDINDRMVDMVPGEVKEYLSCDTISKSSEHIPDFDLLYPTEFLNSISANNFPAHKLALKKGVTV
MLLRNLNQSMGLCNGTRLLALSLGQRLLECQILTGTNIGDRVFIPRIALTTTSPKWPFTLQRRQFPVRVCYAMTINKSQG
QTLKRVGVYLKKAVFTHGQLYVAVSRSTSRDGLRILIEGDDEACSSKTRNVVYHEVLQTVDLMMGHTLLSDLSLGDDNER
ICVRVSRFWAFCDQKDDDKILHFGLVLIDEKGTSIAAQIYPPCDEIFRPIITEGKVYYIKYFRVRKCNRQYKPVDNCMSI
YFTRWTKLEERVDPPAEIPLYTYSLSPFGGLRSRVGKKDSFTGSLTLLLLMHA
>Helitron1_OS_rpa#RC/Helitron [Oryza sativa]
MAHILISQLSCGDSNIRIKARVSRLWDFHDLNDDRKIVHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVYYIDSFT
VRYANRTYRPVAHSLMILFTKWTTLEECVDVPADFPAITFSLTPFGDVPSLVDKNIFYVGNNLSIPSYYIYTSFASLQHL
LNLYHIQTDIMGVIAEIGTTSTRATAFDAENIYNAGQRQPQVVVFVGTLVKNYKGLGLTLTGSSPCKWYINFEIPEVVEL
KERWNDAPPAGFNQSNPQEKTLKDILDLNPHKHKYKLVLI
>Helitron4_hel#RC/Helitron ATHEL4p; multiple exons [Arabidopsis]
MPAGIDLSSPIQSYRRHLTYDDNLPSDANDSQYPFGNHRPNSNLSSSFTTTNLEQGETSNPSKDKRLFRNFTNDIPLQIN
GVTHCGRGDRTDDPILPEFLQSGNQMNLGECDSNGESDGSESDIYDDLENGFQDEVDYDSYTNYKQKGKEHEDFERQFNM
NSRKNKTVYIDHGDPIYSCEYCGAIMWHGERIEKTVKNKKPKFTSCCLQGQVKLPFLKNSPELLYALLTNDDEISRHFRE
NIRAYNMIFSFTSLGGDTENSVRASGGPQMFQIHGENYHRIGSLKPDNDIPPKFMQLYIVDTENEVDNRSEALSNGVNAD
KYKKKELRKEIIDAVIKLLNSINPYVSHLRTARDRFNANPEETLHMRIVSKREKDGRVYNVPTASEVAMLIPGDFTIDMP
SRDIVVQEKSGKLQRISEILPCYLPLQYPLLFPYGEDGFRTGIEKHQTGSGKKTKNKCISIRQWFAFRIHERKHEKHILL
RSRRLWQQFLVDSYTAIESNRLGYIKLNQSSLRADNYNSVQKASEEGKSDLKDQGLACYLPATFTGGPRYMRNMYLDAMA
LCKHFGFPDYFITFTCNPKWPELIRFCGERNLRADDRPEIICKIFKMKLDSLMLDLTKRNILGKTSTSMYTIEFQKRGLP
HAHILIWLDSKCKLTKAEHIDKVISAEIPDKLKDPELFEVIKEMDGSWSLWCGEPEMSIRRRTDDFVQKKDFKCDNRYVI
PYNRSLSLRYRAHINVEWCNQSGSVKYIFKYIHKGPDRVTVVVESSLNSKNKEKGKQKVNADTDGSEPKKKNEVEDYFNC
RYVSACEAAWRILKYPIHYRSTAVMKLSFHLPGEQFIYFKGDEEVETVLNKADLDGSMFLAWFELNKVSKIARKLTYADI
PTRFTYDPKEKKFNLRKKGFAIGRINYVPRDIEDGYYLRILLNVVPGPRCFEELRTVNGVLYKEWKDACEALGLLDNDQE
YIDDLKRTSFWSSGWYLRQLFVIMLDALISPENVWAATWQHLSEDIQNDKRKYFNRPDLILSDEEKKLYALQEIDHILRR
NGTSLTYYKTMPQVPRDPRFDTNVLILDEKGYDRDSLTKKHAEWIKMLTPEQKSIYDNIIGAVNENVGGVFFVYGFGGTG
KTFLWKTLSAALRSKGDIVLNVASSGIASLLLEGGRTAHSRFGIPLNPNEFTTCNMKAGSDRANLVKEASLIIWDEAPMM
SRHCFESLDRSLSDICGNGDNKPFGGKVVVFGGDFRQVLPVIPGADRADIVMSALNSSYLWSHCKVLTLTKNMRLYSEGL
SVSEAKDIKEFSEWILAVGDGEEFTFLSSDSLDPADIGGRNNPALTPDFLNSVKVSGLPNHKLRLKIGCPVMLLRNIDPI
GGLMNGTRLRITQMGPFILQAMILTGDRAGHLVLIPRLKLTPSDTKLPFRMRRTQLPLAVCFAMTINKSQGQSLKRVGIF
LPRPCFSHSQLYVAISRVTSKSGLKILIVDDEGLLLSERFVKNFIDSMTATMKHPLSCPLNFRTSVLQLKNNSLHLYFGK
LHKSIK
>Helitron-3_NVi_hel#RC/Helitron 3-3730 Incomplete N-term, via tfasty with Helitron-2_HM, 1 frameshift and 2 stopcodons. [Nasonia vitripennis]
NTSYPQELKDLLFQNNSKSINFKKNIRGYNNLFAFASFGSKLVYFNNPGPQVLKICGQVYHNSYSLHPNENEDPKYGQLY
IIDNEIANKYRANNYKIDKPDSNILEFLCTFLSLNNPYAKAYKMMYEIENEENINAHNNNITPPEIVMSLTRDNHTKNKS
YFATCNEVAVVYIGNYGEPPFDRDIRIYPKTEKPQQINILSKHLDPMTYPLIFPFGHPGWQPYIKCTKKEYKNNNISTLQ
FYSYRLSIRGDFNPYLNLxNLSQQFIVVVWTRIEGCRLYYLRTHQAQLRTEMYKGLMDYVSNRANIDNSRIGKMVILPSS
YIGSPKSIQQNYLDSMTxLQVDGKPDIFITMTCNPNWKEIQENLLPYESTIDRPDLISRVFHEKVKILKTELLKNNIFGK
VKGYVYVIEFQKRGLPHIHMLLWLHTNDKFRDTDQIDSIISAEIPNENEYPRLYNIVKNNMIHGPCGSQNKNCVCMNEDK
TRCTKNFPKPYVNQTHYNPDGYPSYRRRKNNNKITFSKHRIADNSFVVPYNPYLLLLLECHINVEICSTIKAIKYLFKYF
HKGPDTALVKFANEHNPGNEDNVNENNDTYKYDEISQHLSTRYVCAPEAIYRIWEFLLHEQSYVIKRLAVHEEDEQYVYY
QEGCEHEMIDKNVHTTLTSWFKLNKEDKNATQYLYHEIPYHYVFDKKTKKWNKRKKFIKPLISRMYFVNPNKREAFFLRL
LLLHVRGAKSFADIRTVDGIIYDKYGNACISRGIISTDEEWNKCLAEAAVFKFPKSMCELFAYILVFQRPINSLELYDKY
KCHFMDPKLPKIQAEQRALKNIESILLLHGLRLNDFHISSIENNYDDEEYNNELQVCKDGENLETLINSLSTDQKKIYDL
IINATINSIGNKYYFIDGLGGSGKSYLHNVMIKYLISMNVPFITMAWTGIAANLLINGKTVHSIFKLPLNINEQTTCNIC
PNSKYGKHIKNVKIIIWDEISMVSKHAFEAIDKCFRDICKNDLPFAGKVIVTSGDFRQTLPIVRHRNKTKINNDLMTEIF
GHKIDPNDSTLKNKVILSPLNSNVLKINESIVERIDGDHYIYYSDDRIQSDADDKLTNTIPTEFLNSLTPNGLPPHKLIL
KKGAIISCLRNLDIDGGLCNGTRLIIKDMKQYVLTAEIITGKYSGKQVLLPRIDLAPSLDEIPFGMVRRQFPIRLSFAMT
VNKSQGQSFDKVGLYLSTPVFSHGQLYVALSRTTSKEKLKIFK
>Helitron-1_DVir#RC/Helitron 2285-8638 [Drosophila virilis]
MPRTKKLSVLNRARRQQARNELNRSNSEYAEHERINNIESQRERRENEGFSQTERNRNRQRNQVRRQYIVYRANEQRQNT
VDHSSRRANSPVREQEQLANTSRRSTRRQDPVYRANEQRQNTVDHSTRRANSPVRQQEQLANTSRRSTRRQDPVYRANEQ
RQNTVEHSTRRANSPVRQQEQLANTSRRSTRRQDPVYRANEQRQNTVDHSTRRANSPVREQEQLANTSRRSTRRQDPVYR
ANEQRQNTVDHSTRRANSPVRQQEQLANTLRRSRRRENPVYRADEQEQDNIRRARHRQDIQRRLLERARDRNQRSQVREN
PIRRIIEQARNTSVRRSARIHARQEAFDANRSLSQRVSQYRGNTGNRIAENRRNATRNRGERAINFSEDRISPAIRSSLD
GLIAGFNRTVKQGPDQVCLCCKGLWFPHQVEKISREVIESKCSAEVSSDILYLSSIFPSDNNKYDFCKTCSRSIKLGKKP
KTSITNGLDFPDLPDCLKGLTPLEERLISPRLPFMIIKSLGYGRQNAIKGAVVNVPIPVANVVTSLPRAFNESEVVQIHL
KRRMEYIHDFMAETIRPSKVAEAIKFLVNTELYRKHQITINEQWLSSFSSDEVPFVASADDRDLVSQLVARSAQASIDEQ
NNIEEDINPGGQETLLENVPVENIAMQRIVIAPGEGQRPLDMIEDCDSEELAFPTIFAGIKRKCAESFTTIVRSELRNFD
RRGCRTDKLFLNFKKLEMINIRNSTSICLRKHSATRGITAAQVLNEEYLENLIRHDDCYRVLKNIRTSPAHWEGEKKKVM
AMIRQIGLPTFFITFSAAETRWAELLVLLSKNVDKLEISEELAANLSFANKARLIRADPVTCARYFDFRYRQVLKLMKKE
GGVFGSHRVIKYYWRVEFQQRGSPHVHGMFWLKDAPIVDLADESSIPSVKSFIDQFITTETNNPDVAPFLEYQTHNHGHS
CRREVRAQNICRFGIPYPPMPQTEILFPLEEDAENKEVHRRNFEKIQGVLEYPFDRESIDYLSDFNNFLTHDQLNLSYEC
YINALRSSIKKPKIYLKRSFAAIKLNAYNTHLLLLQRANIDIQFILDPYACCSYVVNYINKSQRGISKLMREAVSEISRG
NVTLKQRLQHIGHKFISGTEISAQEAVYCCLGMSLSESSNAVVFINTSLPENRVGLRKSKQQLQNLPDDSVAILEIGLID
HYVQRPDALDSLCLADFAAFYSFSKRHSGTRQNIDDADDIETSRASQQLVYALRDGSGFVKKRNTPIIIRYRRFNINTDR
SNYFRELVMLYVPWRDENVELVARDCESFCGQNHELIESNRRKYNSLNDSELQHALENAVQAENEENVENQEVVDDRFRV
LGLPEINPHLNVLNINGNDENLDSEDNNVRLIKLPAIVSAESLADIVRSLNLKQKTYFTHVLHNAKNKSVFYEFVGGGAG
VGKSRLILALFQSLSVMYNSRPGSDPNSPKIILCAPTGKAAFGISGSTLHSMFSLPVNQSGSDLRALSNDLVNTLHSRLI
DLKLIIIDEISMVGSKMFSQLDSRLKQIFKNTSPFGGISVIVFGDLRQLSPVGDRWIFESNSNDPYSAIYASLLWDLFKY
FELTEIMRQREDQPFASALNNMASGNMTADDISLVRSRICQQSDVPDDAIHLFSTNAATDSYNTIKLNSIPTDQFISTAD
DFIKATHLTAACRQRILEAVSSFRSSETQGLCMSLLLKTTAKYMITVNVDTGDGLVNGATGMLMQIDFDASSTPIILWMK
FSDDTVGVLARSKCTHRTEPFWTPIQKIVKSFQYRRNEQVSIDRRQFPVVPAEGITIHKSQGATYSKVVVHTCSRMQRAA
IYVACSRATTASGLFIIGDFVPPKPPKNDDKVQNEIEKLRTGKLLRTHYDHLVNSSALDIFFHNTESIHCHIEDIRSDKL
MLQSSVLCFVEASTYSNENIEIPGFTVVVRLDCEVIPNAPRPKRGIVIYIKNAILNNISNCFSGRQISGSFVFEHAIFRY
KSVCFLVIYKSPSYPLGLFKTEFEVLFQQYLFLRERCIVLGDFNLCLSKFDRCRALYDELLRKGLRCLLDLKTPTTNCDS
HIDWAFSNLSSEEVSARTLETVYSYHSGISLTVQDRVN
>GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) [Oryza sativa]gi|5902445|dbj|BAA84458.1| GAG-POL precursor [Oryza sativa (japonica cultivar-group)] (RIRE2) (Gypsy_Ty3-family)
MPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTD
LNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQ
RCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAI
LNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLL
YVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGD
ILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTPAEKMEHWTMHFDGSKRLSGTGAGVVLISP
TGERLSYVLWIHFSTSHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDG
LELSHVLRHNNEAADRLANFGSKREAAPSDVFVEHLYTPTVPHKDTTQVADTHDIAMVEADWREPLIRFLTSQELPRDKD
EAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIV
RTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFFIN
IVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLP
SVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRY
HNRNVRSRAFLVGDLVLRKIQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFYA
>GB:AAC49878 POL protein (Ty1_Copia-element) [Candida albicans]
KTGAASINCVMNIHNCSKTTFPVENSHSLNASLNVMNFKGLRFNKYLVYDTGATISVVNNKDILSNVKDATIEVSVADGA
TLEADCIGDLIIRVGIVSITLENTLYLPESSFNLVSLKQIEERGFNVLITKESVIVFNQNVAPTIIASRKNAADLYMGPQ
FSEESLECDFDYDGLADMLSNANQDDKDKSSMNEMSEYQEHDYSSRALINSLTEVDVLDVEISPYGVEQLLPTGDKNDIY
NFHLMSNHMSIEKILLLQKYQGLVLHTSKESLQKIADCKVCLLSNAKQRSHNHHSERKASRRHERLHCDTLGPFRSENNK
WYLTSVIDEHTGYIEGIITKDRKVKDLLIQRLKIWNNRFNDKVAYFRSDNAPEFPQPSDLAEFGIWRETIAAYSPELNGL
AEVVNKLILQQIYRIVVTLGPQILKLIYYVIQYSITMINHTPRRSLKGQTPYGCYYQLSEGNFYRFPFAIDCVVTFSNAI
EKNRYGVTSTKGAPSSIMGAVIGYASDCFSYYVLLKNMRCDIILSPNVRILRSYEVINSYLKNLSTTPMSHIVPMAEGIQ
GRQSGAQYEVRGTYVESEYDNTNDVMHMPKESYSVQPASFTLTTGNSSNEYVINDDPVQITIENPDDFSNPLQLTEESHD
MVSEVKSDENPKPSLHELTPGDNPVSKPPQLGTETSVIGKSKEPITNHTKDAPSIQGRDHKRSESTAQVGLSHQPQTGTP
ASEESKLSGTDHFGVDVVKETVSEDWHTSDYPETSAEDEQQNPSLSANKNRVTEKIDEGENISFPGGDDDSVVINSNVEQ
SNVETEDAGNSPIQDEVSQEGRILNEQTDIVDTVAKVIENEKISPINSLDDHTELATDSGNDSNSTESDIQSKNEISPVI
NEKNTEIIQKHIESILADKRLDEFETYNVDEIENVINDDDIAEANPLPDENNDVQMNESFDNNHSMSRAKKKYTFEKEVN
EKIAGTKHSLDTTDPREAIRVLNTGETKRIEPKKREVPITVKLNKRSQYKSPYVTRSGRTVINPKRYLHAVVNKIDYNDP
GWIKSMNAELEKFRSKDVYEEVPIPTGVKPISMGWVHTEKIDSLKGVVRKSRCVVHGNRQKEKLDYDPFSVSSPVIDLVT
IRLLTIIGCELGMTIQHLDVESAYLNASITHSNPIYVFPPKSVPLKKNHCWLLKRSVYGLKQSGLEWYHTIKRVLEDIGF
TQVLHNDGLFHIEYEEGSVIYLGLYVDDILMVGSSQKVIDNFVDQLRDHFEVKVFGEISNYLGIEFRKTESGYILSQEKF
LKKLLKDFKLDDSYGKNIPWIPNDKYEKVAIIRENVNPENDFEKVPNETLLDPDAKKLYQSGVGSLLWAATNTRPDISVV
VNSLGSKSANPNVHDYEKLIYCLRYIKNSMGYHIEYKRNRLNIPPKSFVIECFSDASFAPGLDRKSISGTLIYVNGNLVQ
WATKKQTVIAQSSAACEMLALNYTMLKAIEIKNHLMDLGFEVGKIHCHQDNQAVIKVLRNNYCHPHRPIDICYKFLRQLI
NDKVFSISYVKTNDNYADCMTKCLSRAKFKAFVEGMIKRLDLEDNQTSIQNAITAE
>GB:AAC49879 GAG protein (Ty1_Copia-element) [Candida albicans]GB:AAC24820 gag polyprotein (Ty1_Copia-element) [Candida albicans]
MSSAKNDDNEGKVMESVDQANAISKVDEHIKARFNMLFIKFNDLPKLAVGNQKSVDKWNEEFKYFHVAYPDVLEFLLDYN
PKDKFKVKKVEGIYFTGWCLQMCLQSIFDRFRLIMISKLPKHLQKEANLIKAAYDAVTKSKDYTITSKILSKFVNVEHEL
VVCYNLPYLSQVEEKLEEILYNTSNVVDEYVRSLPNLIGQVLYFNHVKKSEALSLFLNIHASYYSKWIQADNDTSVLPSC
STIAEEMCDHPDYARLVDIPSNKYELNLIVSLPAPEKPKGKPEENSSEQSQKKNSKSRKRNKKHPKSDNDKGEKEKEKEK
TSSE
>GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) [Zea mays]
MAMQSSLSTSAIPTSFAIPVSEKLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTISDASDRTVTVANPAYGRWIA
RDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASSVAEYFAKMRGFADELGAA
GKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYTQLLSYENRMHLQTGSSSLMQSSANARSPGRGMSWGRSG
GRGFSRGRGRGRGPSRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRSANSAAHQNGSN
VPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSVLHVPSTHKNLISVHRLTN
DNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLYPLPPHPDLRLKHNFSSTRVPLEHWHKRLGHPSRDIVHRVISNNNLP
CLSNNSTTSVCDACLQAKAHQLPYTISMSQSSAPLMLIFSDVFGPAIDSFGRYKYYVSFIDDYSKFTWIYLLRHKSDVYK
SFCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKY
WDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCL
DISTGRIYISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLPHDSCGNNMLTDHANNLPGSSSPLPFLAQHFLQGNSEVPT
SNNTAMALPASGPNEVSVPPALVPSSLVPAASPAPTGVSANAEPAPEADSLSSGPPVATESVTGVPDADPLLQAPGSSVA
HQTPDSAPLSAAAPRTRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSEALADPQWRAAMEAEFQALQKNNTWTLVPPD
RTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLH
GILEETVYMKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVD
DIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLLKRVGMECCKPVHTPVATSEKLS
ASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLS
AFSDADWAGCPDDRKSTGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWC
DNLGATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTKALTIGRLNEFRRQSQPRSVVIEGGY
>GB:AAB94027 reverse transcriptase (LINE orf2) [Drosophila mercatorum mercatorum]
TLIMFRVIQANCGRSRAAVIDLGVRMRDSGVTSALLQEPYVDRGGRITGLPAGMRVFSDSRNKAAVIVHQEVVCMPVSSL
ITEHGVYVSASGNFGSIFLTSVYCQFNAELEPYLLYMDAVLLLASRTPVIYGLDANAVSPLWFSKLPERSRGYLNRQRGE
LLADWIQGSRAGVLNVHSNVYTFDNRRARSDIDVTIVSDSATTWAAYEWSVSEWDLSDHNIITIVVTLDPASTVESYAPV
PSWKLHSADWRRFGDELRTASMDFPLEQFRAMTSDEQVTALRSLVHQVSDAVFGRQQLRAKRRVSWWTAALTDARRELRR
ARRRLQHARRTHSDSATVLASYFRIARKEYERMMLHEKRNWKRYVGEHQRHPWGSVYRICRGRKKCTDLGCLRWNNELVV
TWAACANVLLHSFFPAAERPVDVPVPPEVPPVLDPIEVDTCIAKVRSRRSPGLDGITGDMVKAVCTAIPEHMTTLYTRCL
ADGYFPTEWKRPRVIALLKGPDKDRSDPASYRGICLLPVFGKVLEGIMVNRIKEVLTDESRWQFGFRPGRCVEDAWSHVV
SSVEASAAKYVLGVFIDFRGAFDHVEWDAALRRLSDLGCREVGIWRSFFSDRKASIVSSFGEVNVDVTRGCTQGSISGPF
IWNILMDVLLHRLETHCTISAYAD
>GB:AAB70784 protease/reverse transcriptase (Ty1_Copia-element) [Volvox carteri]
MTNPSPPGRNAQDALEEDAQALGYLRLSCELPVKQLLRNCQTTLAAMQLLQLQFRPASQARLSLLEPQKQLRMGDDETTA
DFIQRAEQLHSDIISAGGQWDEAAMRHAILHGLPPQYAITVEFAMYLPNLTTPQLVFMLREKENNLKAQAVKSGLVGAVG
PGRTARGVRGAAGASGAAGANDTCRYCGQPGHYVRECPVKLADVSVGLYRSNAFEQPRSTGASSSGSGNRQRDGGGGGTS
PGNNSGGDRTRERGRFRRGNGRRSGSNTAGGSSGGGGGGVSSCQNRATVLVVGGSGNSSAVVLDSGSPYHLTCDRSLLHN
YVPAGAPKQIKWGNNQLADVMGTGQLLLRTRDGESIWLRNVLHVPSSGLTLMSVDLLVTLGCSVTFGTDKAGTYLGPERG
TAAHRVLVDGKVTVSSDVTFDDDLRGLASQRAGTSFGAGPARPGSGDPVGGSTQPATPPPPVVASPPVNPAPPPRPNTRS
QRQPLHPPLATVCPANNSSGGGGDLGSPPLLNKASGSTNYAEAGDGNAGGGGNSAVQEPRSYEEAVASSQADKWRTSMDD
EILSQLSNKTWELGTPPPGARILDCRWVYKIKQEPGGEVRYKSRLVVKGFEQRAGIDYGELFAPTTRAALLRALLAVAAA
RGMTVHQMDVKTAFLNGDLAEELWMRQPPGYSNGDPSQACRLLKSVYGLKQAPRCWYEKLAAELGKLGYEPSASDPALFV
KRGSDGSIDVLVHVDDMLVAADNPQLVAAAKAGIAGCFAVRDLGEARYYLGMEIVQDRRNRSIMLTQQRYVEQLLQRHSL
ENAKPRATPLPQGTRVLPASDTQPILTDSSGYRALVGELNYLATSTRPDIAHAQTSHNTLSMLARHMSAPTKAHMGLALG
VLRYVSGTRALGLRYCGDASNFCGYSDADWAGDPATRRSTTGYAFLLGSAAVSWSSQLQRTVAASSVEAEYQAAAAAVRE
ALWLRKLASDLDLSPGAVNVQLDSQGALSLGNNPITSVRSKHIDVHHHIVCERVARGEVKLSYCTTEDMVADILTKALGE
VKFVRCRTALGVT
>GB:AAA35184 ORF2 (Gypsy_Ty3-element) [Saccharomyces cerevisiae]
TNVEHVRRVLTDLELESKDQQTLFIKTLPIVHYIAIPEMDNTAEKTIKIQNTKVKTLFDSGSPTSFIRRDIVELLKYEIY
ETPPLRFRGFVATKSAVTSEAVTIDLKINDLQITLAAYILDNMDYQLLIGNPILRRYPKILHTVLNTRESPDSLKPKTYR
SETVNNVRTYSAGNRGNPRNIKLSFAPTILEATDPKSAGNRGNPRNTKLSLAPTILEATDPKSAANRGDSRTKTLSLATT
TPAAIDPLTTLDNPGSTQSTFAQFPIPEEASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRND
LPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVD
YRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR
YMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAA
IRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLT
TDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNK
NEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNV
TPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKL
QHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLD
ATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQ
NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETN
NNQRRKPLLLNIGDHVLVHRDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKSLYTVQTRT
QRINQSAPLRELREHTKLLHS
>GB:CAA27748 ORF 2 (Gypsy_Ty3-element) [Drosophila melanogaster]
MSIETNEISKTENKSIYKGNFLFYSPKYKISIPKMGLIDTKTVDSTANVINKVEVQNADLFWITIILIVIALIMVSNALI
KIYKLHNKCLKKRYRSTANGIDNI
>GB:AAA28601 ORF3 (Gypsy_Ty3-element) [Drosophila virilis]
MPRITDFSHANYIPVFDGEVLVFDQRSYLRHSSNISEFVSMIDETERLSDSFPQSHMRKLLDVDTDHLRTLLSVLQVHHR
FARSLDFLGTALKVVAGTPDPSDFLRIRVTETQLVEANSKQILINSETQKQINRLTDTINKIISSRKGDLVDTPHLFETL
LARNRILNSEIQNLVLTITLAKASIVNPTILDHTDLKSLIEQDTPIVSLIEASKIKVLQSENIIHILIAYPKVEFRCQKV
SVYFVSHQQTILRLDEDTLAECEKDTFAVTGCTVTTHNTFCERARRETCADSLHAGNIANCHTQPSHLKAIMPVDDGVVV
INEATAHVRTDDDAEVTVSGTFLITFERSATINGTEFVNLRKSLSKQPGIVRSPLLNIIGHDPALSIPLLHRMNINNLLS
IRDFREEVVAAGSPKFWFAIGAVLNVGLIGSFFLFLVLRKRRASMQMQKAIDKYDMPEDGHHLRGGVVNN
>GB:CAB39732 Gag protein (Gypsy_Ty3-element) [Drosophila buzzatii]
TMVRAWVYNLKKDDVLRYGDEFGVTLSGTLDVMRRQFGEWVETNEGRIPYSLTVAELARLHGRRPSNSEDVPTVIVGNDQ
YEEDPNAARQSLPSTSAAARLQQTEQGAWRATSTPQPEIRTRGPSSSEQEYPKVAKHVREWNFRFDGTSKPLEFLEQVEW
SADTYGLDLDLIPRAMPELLKGMALKWYVANNRHWRTWGTFVRSFQEFFFAEDYLEDLKDEVKRRKQMVDEPFKIYMVEM
QTLMRPLRYGPDHEMKLIYNNSIPDLRAYARPYQFQSLMELMKLADEFEELERDRERLRRLQRPARTRLMAMEEDDGHEE
EMLRRGALEESPRPAPRTGATGQRTHIPNPSRACRVCGQEGHRAVRCRNRALDFCWQCGRIGVRTVACCQSGNDQRYPQS
RGEREQCQTAPRH
>GB:AAC39020 Pro (Gypsy_Ty3-element) [Dictyostelium discoideum]
LDEGDESKSKILNKNYKISQYHHLEDNDYPVNKDSLYTLNSFYNQNIVKQLHQQSQQHDVHKNINKLKEYVKDSYGIKLV
PDTTVPIPKAVESEMKYKPQKIEFNTPTELTNVQDKNYTVNIFNRPKILNSSKELINDEEDELLYTIKFDKETNKPIISL
LHSTGTSDTALIPTLKCLIVPNRENMDKPKIIINSHSKGKQFKLILDTGSNVSLINKRLISKDMKNHVHKTKAKINFPLL
DVKEEFVEQINIQVNNEIHNFFIIELDIIDVLFGNDILKDSIINQKDKIIKLNNSTYKINYQQSNQLHCNVKAPRKHVTV
SQ
>GB:CAB39734 Envelope protein (Gypsy_Ty3-element) [Drosophila buzzatii]
LTLAVNSSVSASTGYTAAFITQGREPRLPKTMFDAQTLGTGQEAQSPIERAAKMREVLEIVRRNLERAAQDQARITICGG
GSGSRLLGTKCGRRNATCPMPRTDLQRSWHRDTEGHIRWSSLYRRSSAGISSDAEKRTRTAHVADLKPWRGETGGQTRMR
DKGSIAAVLDDTVASRPAWKSATAEGVLEQADVHIPFDVDAPTTPAAKRPGLKTRARFETAYYSELCEQRRSSNSTTSWK
AHPADPRLLAAIRLERRPSTPCTNQGAGTTSRVRLPPVRLPFHPRRRIRPNLRRHQPYLELEPSSSEESRSPASSSGTER
RTSLEGTRDEWPEEVAQLATQLEAKGSSRTARIIWVRGVNTASAGHAWDVASSPSATMLVVVGRRKVWAPATRPVAATGV
TGGERGSGKSSCIGQRFRWSYAKTKRVLSLPFLNVTTPLTGLRTTPILTKVQQQPRKVMAWSHPGVLKGIQSPSAVKNIT
VPAPRDEVCQLKDLAILPAHLRRSHPGAAITRGVFAAAPGVWAEAAAGPSGPGASIRHQLGLEEWKLTLKIRKRKLKKNI
IFTYQQRTELPAANGKQLVSSAALLTER
>T27D6 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
GSIREVKYPDRLANPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDQLVEATAGHELLSFMDAFSGYNQILMCSDDQ
EKTAFITDRGTYCYKVMPFGLKNAEATYQRLVNRMFADKLGKTMEVYIDDMLVKSAHEKDHVPQLRECFKILNKFEMKLN
PEKCSFGVPSREFLGYLV
>Athila4-3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHCVPKKDGMIVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIKEMVEVFMDDFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKI
>F1M23-3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVQYPDWVANTVVVKKKNGKDRVCIDFTYLNKAFQRESFPLPHIDRLVESTAGNELLTFMDAFSGYNQIMMNP
EDQEKTSFITDRGIYCYKVMPFGLKNAEATYQRLVNKMFNEHLRKTMEVYINDMLVKSLKKEDHVKHLEECFVILNQYQM
KLNPAKCTFGVPSGEF
>F9M13-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSLWGAPVLFVKKKDGSFCLCIDNRELNRVTVKNKYPLPRINELLDQLRGATCFSKIDLTSGYHQIPIAEA
DVRKTAFRTRYGHFEFVVMPFRLTNAPAAFMRLMNNVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLF
SKLSKYSFWQRKIGFLGHIV
>F7M19 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LRIGSITEAKCPDWIANPVVVKKKNGKWRVCVDFTDLNKACPKDSFPLPHIDRLVESTFGNKLLSFMDAFAGYNQIMMNL
EDQEKTAFYTEQGIFCYRVMPFGLKNAGATYQRFVNKIFALQIGKTMEVYIDDMLVKSMTEKDHISHLRECFKQLNRYNV
KLNPAKCRFRVRSGEFLGYLV
>Athila4-9 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
FDAGVIYPISDSTWVSLVYCVPKKGGMTVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSGYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKI
>F13C19 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
VIYPISDSTWVSPVHCVPKKGGMTVVKNSRDELIPTRIITGHRMCIDYRKLNAASRKDHFPLPFIDQMLARLANHPYYCF
LDGYSGFFQIPMHTRIFSNPYGTFAYKCMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCFLNLCRV
LKRCEETNLVLNWEKCHFMFREGIVLGHKI
>T32O2-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSIWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHH
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFSYKRMPFCFCNAPATFZLCMTSIFSDLIEEMVEVFMDDFSVYGSSFS
SCLLNLCRILKRCEETNLVLNWEKCHFMVREGIVLGHKI
>F23C08 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
EEGIIYPISDSSWVSRVHVVPKKRDVTVVKNEKDELIPTRTITGHQMCIDYRKLNVATMKDHFPLPFIDQMLERLANHTY
YCFLDGYSGFFQIPIHPDDQEKTTFTCPYGTFAYRRMPFGLCNAPTTFQRGMMSIFTDMIEDIMEVFMDDFLVYGSSFED
CLENLYKVLARCEEKHLVLNWKKCHFMVQDEIILGHRI
>T13H18/F3K12/F14P14 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDADIIYPISDSTLVSPVHCVPKEEZLZLKNDLDELIPTRTITGHRMCIDYRKLNAATRKDHFPLPFIDQMLERLANHVY
YCFLDGYSGFFQIAIHPNDQEKTTFTCPYGTFAYKRMSFGLCNAPGTIQRSMTSIFPDFIEEIMEVFMDDFSVYGSSFSS
CLLNLCRVSRCEETNLVLNWEKCHFMVHKGIMLGHTI
>Athila4-7 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNEKDELIPTRNITGHRMCIDYRKLNDASRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPTTFQRCMTSIFSDLIEEMLEVFMDDFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKI
>T7B9-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSLWGAPVLFVKKKDGSFHLCIDYRGLNRVTVKNKYPLPRIDELLDQLRGGTCFSKIDLTSGYHQIPIAEG
DVRKTAFRTRYGIFEFVVMPFGLTNAPASFMRLMNSVFYEFLDEFVIIFIDDILVYSKSPEEHEVRMRRVIEKLRELKLF
AKLSKCSFRQREMGFLGHIV
>model.supercont1.7.33.1 (piggyBac)  piggyBac transposase [P. infestans]
TVSGVLFYFMQPRLWEDIAEASNEYFDEKIDERVEGQYTKQEQREKKIPGFKKSTRDAIKAVLLSTPPITARELCVFVGL
LFARTIAPNKEKLENHWKTTDEGGIPRGRFGLFMSRDRFMHISRNLHFSSNNGPRAATDRAWKLRPVVDALQQQFKAGYI
PPPVMAFDEAMLPSRSTFNQMRVYMKDKPHKWGTKLFMLCCSASAYCLRFEVYCGKWQTDRSSSSKDTNCGPAAVIRNLR
QVFGARGTIEKRLVVTDRFYTSPTLSMQLLAMGFYSIGTVMTNRRGFCKEIIVKKKKRPADVHRGTYAVAESTLVPSMKA
VCWWDNRPVHLLCAGGSTEQDRVVRRAKSGEQVEVACPRVLKHYQTFMGGVDVHDQLRLQRYSLQLALKYKKYYKSLFLG
FIDLATVNAFIVYNRRRAIDGKPKLSHVKFLKQLHLELTQ
>gi|156542006|ref|XP_001602739.1| (helitron ORF) [Nasonia vitripennis]
MAEAVIPFSTDEAFDDLTDKDRTAELSGYICWIKAATSVGELGKYRLLKFSLTNGSKKVHCCIWGQPLIDVHNNDIIMNR
RLHIDGALCKSSRISFAMENEGYVPFDLVIQPTTMLTFSGIFEQEIPVPIEVLPTAVTFENINQAEGLISIDGFVRMKFT
MIPSRFENASYGCGSITDGRSKLTVNITNFIVVDNIQKGVAVNVVGTVDATNGILCITCNNMNAITLRDNTPAMSDADLA
QGGKPLKRLAPDYLGPMNTLCIHCKAKHFVSETVLNKGLSFHDCCSHGGVVLEPSPIFPKDLLDLFNASHAKSNDFFQHI
RVYNNSLAFASFNSNLVNLNSTRRGPYCFKIQGQIYYQINTALYPQDNDCPSYGQLFIIDPLEAIHFRMQQNSDLQYETL
EILYKIIRENNIFAKSYEMMKEEINNQQTLLDPNETVPELQLLFTLKPGTDRRRYNFQRTNEVAAIFSTTADSEIPESYV
TIRNKNTKTLQYVSTMDPNVEPWIYPLFYPYGTQGWHQNLQRISTNNNGNLRRVTRLAYTRYKIAIRPDEFNPFIMGRRL
LQQYVVHSYVKIEKDRIMYCKNHQKEIKADTYQGLHDYMQRSANDMNGQVGKTIILPSTFIGSPRHMQQCYQDAMAIINR
KGKPDIFLTMTCNPKWSEITENLLPHQQVSDRPDIVARVFHLKKERLLDFIIKKNCWTSCSICIFIDFQKRGLPHMHLLI
TLAHGFKITTPEIVDKFISAEIPDAQKLTLQEIVLKNMIHGPCGNWCKVEGKCSKKFPKRFVDETNMDENGYPNYRRRNT
GITYELNNGNVVNNTWVVPYCPTLLEMFNCHINVEVVTSIRSVKYLYKYIYKGHDAANIVIGESNEETLINHDEIQDFLE
ARYVGPVEAIYRILSKILQDKSHAIIRLAVHLPYQQSIIIVGNANNIRENLNCSSSTLLDYFKLNLENPEARQYFYADIP
SYFVYKKQKIDGLTVSSWTVRKQQFNCIGRMYSISPTQLELFHLRLLLLHVKGSTSFDDLKTVDGVIQPTFTAACLALGF
IEDDEEWMRAMEEATVWMMPTQLRRLFVRILIHCQPVHPEELWEKFKDAMSEDFSRTNEITISYQKAYAHVNTLLNMEGR
ALTDFPTMEQRVEQHTLDDNTNNAALPQMAELGQQQYGQLNTEQKEIVDTVLHAVDINNHENNNCIYIDGPGGSGKTFIY
TTLYNIVTSKNIKVYTMEFTGIAATLLSHGKTVHKTFGLPVPMYHDSSSSIKAQTKEAQILKEADVFIWDEAPMAPRYAL
EIANRTLQYIMNNNLPFGGKIIILGGDFRQLLPIKINGTRGETLNLCIKYSELWKYFKKFTLTTNMRVMPNEVDFAKFLL
EVGNGTLNDSHDNINVPEHCILTANNNMAYHLFGKLIEEKRFENMSKCAILSARNIDVDEINKQVTNRITLYCENEYPFS
FKRRQFPIKLAFAMTINKSQGQTFDNIIIDLQSDVFNHGQLYVAMSRVRSWDSLKIYLGNQREGMINAGMIYKGSDNGGP
PLLGYSDADFANDTETRRSVTGFVILLVTGAITWSSQRQKLVTHSTTEAEYVTAATAAKKFVWIRKLLSDIRRPCA
>model.supercont1.6.17.1 (piggyBac) piggyBac transposase [P. infestans]
TPSGAFFYFMQPDLWESIAEETNTYFREHIDERVDGLHAKQVVRERKNTGYKSKSNEKLRNELKSSADITPRELCVFLGL
LISRSIVPNKEKLAHHWRTTDEGAIPRGCFGFYMARNRFMHLSRNLHFSQNGDERAATDRAWKLRPVIDALQNRFAAGYT
PPSIMAFDEAMLPSRSTFNRMRVYMKDKPHKWGTKLFMLCCSTTAYCIRFEVYCGKKVRAGGTSSTDYKSGPAAVVRTLR
AVFGPTAPADGSMRLVVTDRFYTAVPLSVQLLTMSFYSIGTVRTDRLRLSTKLIPKKQKGDKKKPPQIPKSRPSNIERGT
YSVAKALQVPDMKVVRWWDTRSVHMLSTGGSVAIDRIVRREKLTGEQQEVACPRIVKDYQTYMGGVDVHDQLRLQRYSLQ
LCIKYKKYYKSLFLGLVDLAIINAFIVYNARQTKANNPKLTHVKFLKQLHLALCQ
>gi|167872993|gb|EDS36376.1| (piggyBac) piggyBac transposase [Culex pipiens quinquefasciatus] 
TPRDVFLAFLSPEIIDEIVVCTNLYGTGRYGKEWKAVTTNEILSFIAILIAAGRNHQNHVNVNDMWTSNKNWRINFYHHA
LAKNRFKEIFICLRTDDVRTRKSRFLKSGDKLEPIRNIFDVFVANCQRNYVPPKVLTVDERLCLFRGRVSFRVYIKSKPG
KYGIKIWVCATETGYIIFCQVYTGKSKDGPEKGQGMRVVKDLVAPYLNTGREVTADNLFSSVELAEYLYREQTAYTGTMR
ANKADIPPEFTAKQNRQPGSFLQGFNGSKSLTSFYERKGKKPVVLISTKRFGEPTAGCKAPVVQYYNQTKGFVDAGDQQT
RHTTVSRRSRQWPKKLLCEIIDMSTLNANIIFREADNRNRGIVPLNRSEFLRILSEELAV
>gi|115873300|ref|XP_001184954.1| (piggyBac) piggyBac transposase  [Strongylocentrotus purpuratus]
AAGVLLGQAIMEENEAMERRCNQFIRLCELKWTESKLTGMQNKLFRDSEYFRSTHCLNKWTDTTAEEMKAFTGLQMAMGL
VTKPALSMYWEETWIFATPGFGAVMSCNRFELLNSMLHFANNDERIPKGQEGHHILYKIKPVMDIVQPTYQASVQPGLSL
SIDESLAPFKGRLQFKQYMPLKPTKWGVKFWVLADAKSGFCLDCNVYTGRDADRAAAPGGVTSAIVKGLTRPYYASGRHV
YMDNFYSSPELYDSFADNKLGACGTVRLSRRGIPDEMKAASVQSRKGDRPAFFRKGRLLGVSWHDTKRVSVLSTIHNNST
VQKEIRHRGSENGRRPIIKPKVVEQYNQHMGGIDLLDQRMSYYRYPHRHMKWYRVIYHFLMEVALVNGHIASRIAPENQS
KECVRRFRQQVICGLVD
>gi|110288728|gb|AAP52492.2| (helitron ORF)  LOC_Os10g10730 [Oryza sativa (japonica cultivar-group)]
METTHEDDINDECHMFAGEDMDFDDDDDDEYYMFAGGDGEDEEDIDLNEIEHDSVEHDPYDHVYSNIPRNTHVLKPTANC
KHCGAKKFQYETNGFCCRGGKIKLSNLETPPELMRLWSSMDSDATHFRDNIRFFNGHFSFTTLGVSLDERYTNMRSGVYT
FRAHGQIYHNIHSFGQRDNAPEHLELYFYDDDPSLNHRFRRSPSLDQEVVRRLVEVLHGNPYSQTFRSLAQADDLEEYRV
TLNLDNRLDQRQYNVPVTSEVAAVWVEGNELRTHFERSVVLYGNNNTKYNIQSYYGCYDPLSYPLFFPKGELGWHPEIPK
VGVSIDDVIASRGNNHADSDSNSRLCVSVRDYYCYKFQMRRGIFNPLLYGKRLFQQFAVDMYIKVESTRLDFIRRHQVEI
RADLYKGVVDSIHAGESRASQVGKRTVLPASFIGGNRDMKRRYMDSMALVQKYGKPDIFLTMTCNPNWEEIIGNLEPGQT
PQDRPDLIVRVFRAKLEDLKKQLLEKHILGKVIAYAYVVEFQKRGLPHAHFLLIMDGKYKLTSPEQYDCIISAELPNKHK
YPELYEMVVKHMMHGPCGTLNRKNVCMQDGSCKNRYPRAFNAVTINGKDSYPVYRRRDNKRCAKVRKQMLDNRWVVPYNP
YLLRMYNCHINVEVCSSIKAVKYLFKYIYKGHDRASVTLGEADSNGNIDEIQQYRDARWVTPPEALWRIYSFDLSKVHPP
VKQLQLHLPNMHMVSFRAGQDLHDVVERNGVEKSMLTEYFEANKVNEDARGILYKDFPEAFTWQAGPKVWQRRKRRITQI
GRIVTAHPAEGERYYLRVLLTHVTGATSFEHLRTVDGEVCSSFREAAEKRGLIEADNTLDECLTEAEVFQMPSSLRRLFA
TILVFCEPSDVLGLWNKHLEGMLDDYRRSHTCPRTIEQMVLLDIRNMLQSMGKEITSFPLPEIDESYDTSGSEPREIFEE
STIEVDHGHMDLSSSLNPEQRCAYDEILSAIEGGQGGLFFVDGPGGTGKTFLYKALLATIRGQGKIAVATATSGVAASIM
PGGRTAHSRFKIPLNIDDGGVCSFTKQSGTAKLLQRASLIIWDEASMTKRQAVEALDRSMRDIMDRPDVPFGGKTVVFGG
DFRQVLPVVRKGTRPQITDATLRKSYLWDCMRQLRLVTNMRAQNDRWFAEFLLRVGNGIEEACDDGYIRLPDEICVPCTG
NDDDLNNLIDNVFPMLDANLADPNYITSRAILSTRNEYVDQINMKMIDRFRGEEMLYHSFDRAEDDPHNYYPPEFLNSLT
PNGLPPHILKLKINCPVILLRNIDPANGLCNGTRLVVRGFQRNTIDAEIVLGQHAGKRVFLPRIPLCPSDDEMFPFRFKR
KQFPVRLSFAMTINKAQGQTIPNVGVYLPDPVFSHGQLYVALSRATARMNIKILAM
>T5E15-3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEAGVIYPISYSSWVSPVHVVPKKRGVTVVKNEKDELIPTRTIKRHRMCIDYRKLNAATRKDHFPLPFKDQMLERLANHK
YYCLLNGYSRFFQIPIHPDDQEKTTFTCPYGIFAYRRMPFGLCNAPATFQRGMMSIFTDMIEDIMEVFMDDFSVYGSSFE
DFLENLCKVLARCEEKHLVLNWEKCHFMVHDGIVLGHRI
>F15O4-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
GHIRESMSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSSIFSKVDLKSGYHQIRMKEGDEW
KTAFKTIQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGRFVIVYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANL
KKCTFGTDNLVFLGFVV
>F26G5-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
AGIIRPSSSPFSSPVLLVKKKDGSWRFCTDYRALNAVTVKNWFPIPTVDDMLDELNGVVYFTKLDLTAGYHQVRMHLSDT
PRTAFQTHNGHYEYLVMPFDLCNAPSTFQALMNEIFRPLLRKSVLVFFDDILVYSSSWSEHIQHVREVFFLLZQHKLAVK
YKKCDFGQKELEYLVHII
>gi|116503626|gb|EAU86521.1| (helitron ORF)  CC1G_10243 [Coprinopsis cinerea okayama7#130]
MSGSTGLRRSSRQAAASPAPTPPSSAVLPRWRARQSNNENVPPPNVAQQTPGPTLRPPGTGVPLQNIGNFALSGLQHSSP
SYRASSSSPSTHLSSERPLPTPPATQPSSRPSRRGPTGVQTPPATQNRRHLQGAASTSTGLLTPVATQRRVGPALPTPPA
TQSNTLSDPPSTTDSTLEAESARIRNLARNSAYATPQGSPRRRRVQRVRLDDSESSASESDASMTSTSRPRTTRVSSARQ
EGMVRRRSPTRNGQIPRRRLFLAARTQYLESKVPRHDLGRMDVPCPHCGALHWLIERTDGSIGSPLFGTCCRKGRVRIPL
LEQPPQPLQLLLTAQTLQAKAFRNDLWKYNRAFSFTSLGVLEDHAINNGSSAPVFRICGELHHNSAALTPTGGRTPKYAQ
LYIYEPQAALQHRINQNEDLDSGIMAQLQAMLLASNRFAHLYRSAYQIMTREGQPPDVSVRLRLLQGQDRRRYNTPTSDE
FAVVVPDRQGNEQGRDIILRLHGGGLHRISDLHPAYAPLQYPLLFPYGERGWSPDLKLKKAGDFTADSNERLSQTEYAAF
RIHYRPNEGQSLIRGGRLFTRYIVDMWASADQNRLRFLRDHQKELRAELYSGLEDAIGTEDHSDLNQLGRRVVLPSSYIG
GPRNMMQRYQDAMAVARHFRRVDLFITMTTNPQWEEITRELLPGQTAYDRPDLVARVFEMKKDALLEDIYKNGIFGNAVA
YVYTIEFQKRGLPHVHILVFLDTPYKLSTVDAIDSCIRAYWPDPFTEPRLFETVKNCMVHGPCGALNPRAPCMDNGKCTK
NFPKPFQPATEMNDDGFPKYRRPDDGRRYPIGVHWVDNRWIVPYCPYLSSKYDCHINVECAASLGSIGYVVKYMEKGPDR
ATLEIMRQQTGRDIEVNENDEIQRWVLGRYISAPESVWRILHFWIHKQIPSVERLQVHLPGQHMVTFDPDEDVRTVMERA
SQERTTLTAFFNANADDGELGVVARQCTYQEFPQKFVWDSRSRRWKIRQRGFSLGRMVFVPPNGGERFYLRTLLTVVRGA
RSFQDLRTYDGIEYPTFREACLARGLLEDDGEWRQCLQEAAEMGTGTRLRHLFVVILLFCAPSQPEVLWEQFRERMCDNL
RYRLQNSGIVNPTEEQVYDYGLYMINNLLSESGRSLEDWPSMPQPIMDWDDLQENPLIAEQRNYDPEAEQQSLITRLALL
NNEQRAAYDEIVHSVEGNEGRLFFLHGSGGTGKTFVYKTVCNRIRSNGSIVLCVASSGIAALLLPGGRTAHSMFRIPVGT
LHEDSLCDIAKRSPRADLLCQTRLIIWDEAVPQHRYAFEALDRTCRDIRDNDSPFGGITVVFGGDFQQTLPVVRRGSREG
IVGATIRYSYLWEHIHVLHLRQNMRLDAQDPSSIGFAQWLIDVGHGQNLSDDNHLDFPQDMRSPSSNSLINFIYPGIDSP
TPPPAQYFLDRMILAPRNADVSDLNEGILDKMAGQKRTYVSADELLTESSASHPVPIEFLRTVNASGLPPGELSMKLGSP
LILLRNLSPKHGLCNGTRMVVTRMSDRVLEVQIIGGECNGDRVFIPRISLIPSDNDDILIKFRRRQFPVRLAFALTINKA
QGQSVKYVGLDLRNPVFAHGQLYVALSRATSRQRIKVLLPDGEQECSTPNVVYPEVLLA
>T10P12-3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRLSTSPWRAPVLFAKKKYZSFCLCIDYRGLNRVTMKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEA
DIRKTAFRTRYGHFEFVVIPFGLTNAPTTFLRLMNSVFZEFLDEFVIIFIDDILVYSKSLEEHEVHLRRVMEKLREQKLF
AKLSKCSFLAEGV
>GB:AAB61272 repressor (ISb-element) [Shigella boydii]
MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTV
LRHLKNSGRSR
>GB:CAA27830 unidentified reading frame 3 (ISa-element) [Agrobacterium tumefaciens]
MAGRSSASSALLYGPRGFDLPFSRSMRLERETPSVSATAFIANRPSATRSAAISVFLSPLWKGLRGGFRPPSSCDRACAP
TPGRDPPVSSLPNSRQPARQNPRLQHLPRSRACATDKANWAPRMTASGRRYRLAGFKTLLNDCQLLLGCPPPARDITRQQ
FNVSIVVRHKPVLKPVLEPFCLCRLSGRNGGQFI
>GB:CAA07835 transposase (ISb-element) [Escherichia coli]
MLSGFTPRPLKRLFTANQCWTSFLDAGGLRDIEVEAVTKMLACRTRILGVKEFGCDNPDCQHVKYLTNSCGSRACPSCGK
KATDLWTATQLNRLPDCDWVHLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGLEPGIFCAIHTYGRRLNWHP
HVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQLLLKAWSEGMAMPESLSHITTESQWRSLVLKSGGKYWHVYMSK
KTAGGRNTARYLGRYLKKPPIAASRLAHYNGGASLSFRYLDHKTGETATETLTQRELVARLKQHIPEKFFKMVRYFGFLA
NRVCGEKLPQVYRALGMDKPEPGRKCAMHKW
>GB:CAA56199 (P element) [Drosophila madeirensis]
MKWCSLCRKVANDVKLVHVPKGLEKRKLWEQCLDCSLTVNSKICDSHFDASQWKSSTIKGQIFKKRRLXADAVPQGDPAA
KLVKLGFANSSTQTEDAFINHSARVEHESLTGRIRLMQKKMDSLREQLEVYKDLEISLRTIFTETQIKILKNKGKRAVFN
ATDMSAAICLHTAGPPAYYHLYRKGFPLPSRATLXRWLXDVNISTGTLDVVIDLMENEEIPEVDKLCVLSFDEMKVAAAF
EHDSSADVDYEPSTYVQLAIARGLNKSWEQAVXFDFSTLMDADTLHSIINKLHKRGYPVVAIVSDFAAGNQTLWTELGIS
ERKNWFTHPADEDLKIFVFSDTPHLIKLVRDQYVESGLIINGKRLTKSTXQXTISHCAKXDVSMSFNITDNHLNIXPLAK
QNIKLATQLFSNTTGSFIRRCNALGYNVQNASETADLFKIINDWFAVFNSKSSTSNSIEPTQPYGKQIEIQRGILAKMSE
IMSSEILGVGAHRLPFQKGILVNNASLEGLYCYLSEKYEMQYIFTXRLSQDIVENFFIAMRPKGEQFEHPTPLQFKFMLR
KYISALTKLNKPIDK
>GB:AAA51465 ORF1 (hAT-element) [Drosophila melanogaster]
SSQMAPYIMIVEFLCLWSSVSAVNCPFFVFYDAITSLLGFSIIWKPKEKVTIMAEAADFVKNKINNGTYSVANKHKGKSV
IWSILCDILKEDETVLDGWLFCRQCQKVLKFLHKNTSNLSRHKCCLTLRRPTELKIVSENDKKVAIEKCTQWVVQDCRPF
SAVTGAGFKNLVKFFLQIGAIYGEQVDVDDLLPDPTTLSRKAKSDAEEKRSLISSEIKKAVDSGRASATVDMWTDQYVQR
NFLGITFHYEKEFKLCDMILGLKSMNFQKSTAENILMKIKGLFSEFNVENIDNVKFVTDRGANIKKALEGNTRLNCSSHL
LSNVLEKSFNEANELKKIVKSCKKIVKYCKKSNLQHTLETTLKSACPTRWNSNYKMMKSILDNWRSVDKILGEADIHVDF
NKSSLKVVVDILGDFERIFKKLQTSSSPSICFVLPSISKILELCEPNILDLSAAALLKERILENIRKIWMANLSIWHKAA
FFLYPPAAHLQEEDILEIKVFCISQIQVPISYTLSLESTETPRTPETPETPESLESPNLFPKKNKTISSENEFFFPKLVT
ESNSNFNESPLDEIERYIRQRVPLSQNFEVIEWWKNNANLYPQLSKLALKLLSIPASSAAAERVFSLAGNIITEKRNRLC
PKSVDSLLFLHSYYKNLNNSQ
>GB:CAA39914 putative coding sequence (ISa-element) [Sinorhizobium meliloti]GB:AAD28751 putative transposase (ISa-element) [Sinorhizobium meliloti]
MTSSNFKMEVLSGPERRRRWSTAEKLAIIHETYEADATVSIVARRHGIQPNQLFAWRKLASQGALTATAAEEEVVPASEY
RALQAQVKELQRLLGKKTMESEILKEALEIAGSPKKHLLRSLSLPRGILG
>GB:AAA68982 transposase (ISa-element) [Insertion sequence IS6770]
MTYKHLTIDELTMIESYYLQHNKPVEIANRMGRAIQTIYNVVNKFKQGKTALDYWHQYKENKKKCGRKVIQLPAHEVDYI
KEKVTLGWTPDVIIGRKERPVSCGMRTLYRLFSKGIFDIDTLPMKGKRKPNGHQEKRGKQQYQRSIHDRPDNYPDFNSEF
GHLEGDTIVGIHHKSAVITLVERLSKVIITIKPNGRKALDIETALNQWFSRFPKNFFKSITFDCGKEFSNWKAISNQHDI
DIYFADPGTPSQRPLNENSNGILRRNGLPKSMDFREVNQTFISSVSNQRNHIPRKSLNYRTPIEIFLSYVQEAFYSNLI
>GB:AAD25737 IS1630 transposase (ISa-element) [Mycoplasma fermentans]
MQKKLSWNERTVLEYLLWATNYSITKIAKILGYSRTTINNEIKNNSTFWGYFALDAIEKTITREKWKNHFKFLNNLNKYK
EFSSLFKKEYDGKLWTVKLTIEKIKNLYPNIDVPSFKTVYNWIKSGYWILNWKGLLRKVYKKGGKREKQSAARRLVGARY
VRPFWSRPANINERKEFGHWEIDLIIGKSKGTHCHLLSFTERVSRYGFLVKIPNKNPWNLNLYLWNLIWKHKLNVKSITQ
DNGLEFSTLFFIGYKLKIFIYKADPYASFQRGLNENFNGLVRRFFKKKTNFDDITEEEILKVQNEINNRPREIFGYLSAL
EMYEKLNAENPWNSTGIDKLLYGKQKRNWESNKNRNLFFKKIGKLK
>GB:AAA85002 SpV1 ORF1 (ISa-element) [Spiroplasma citri]
MKYYQQFSGQFDLSKFLQSFFASALVPVFQNRSSFIENGYIDNLQYDTVLVNFFALKLQNFNNILLSENINDKLQFDKLL
NSMFKISQKFYTNYLRTIFDLENNTYVQGYNKKYGLLVNNGFKIYPRYFYFSDKYKQLDIKLYSAFKNRFYTINNYGSVF
NYDFSVANNYNINSNSGYVFEGALKDKYGLKYKKIEEQKIGYNVFELQAQKENDMYWYYDFNFGIYNWQEINNGGLFPDK
QWWEVQYVTPEGWWDFGAHIKNAVIWIVNTIPGVKQVNELASGVGKVFETVYSFFSQIFEVWKFNPALYSTITNIFLLII
FMKFVRLI
>GB:CAB50739 transposase (ISa-element) [Ralstonia sp. CH34]
MTSFKPRQIVESIEILTEPERRRRRSVQEKLAIVQETMEPGATVSAVARRHGLNPNQVFAWRKQYQEGSLAAVSAGEAVV
PASQLAAAMKEIRELQRLLGKKTQEAEILKEAVEYGRSKNWIARSPLLARGRPMKTVCDVLGVARSAVAAKQARSSEWRD
GRRARQYDDTALVAEIHELVAGLPTYGYRRVWALLRRSHELSGASPVNAKRVYRVMHDHQLLLRRPGRRLDTRRHDGRVA
VDRSNTRWCSDGFEFRCDDGSPLRVTFALDCHDREAISWAATTGGHSGDIVRDVMLAAVEQRFGAVQTEQTIEWLSDNGS
AYIDHRTRTFARELGLEPLTTPVRSPQSNGMAESFVKTMKRDYIAFMNKPDVPTALSQLTVAFEQYNDWHPHKALKYRSP
REFRRAATSST
>GB:BAA24920 transposase (ISa-element) [Burkholderia glumae]
MDVLTGPERRRRWTAEQKLAMVRESFEPGKSVSMVARQHGVNPNQLFHWRKLYQDGSLSAVKAGEEVVPASELADALKQI
RELQRMLGKKTMENEILREAVEYGRAKKMDSALAIVAGGQPVKLVCEVLGVSRSNVSARRSREATWRDGRQPRSTHDAPV
VEAIERVISDLPSYGYRRVWGTLRRERIAAGQAPLNAKRIYRVMRTHGLLMQRRAAPVRPQRRHDGKVAVERSNQRWCSD
GFEFRCDNGEPLRVTFALDCCDREAMSWAATTAGHSGDIVRDVMLAAVESRFGDVLHTESEIEWLSDNGSGYTAEETRQF
AALLGLKPLTTPVCSPQSNGMAESFVKTMKRDYVAIMPKPDAATAARNLAIAFEHYNEKHPHSALKYRSPREFRRSTDSA
T
>GB:AAD55677 putative transposase protein (CACTA-element) transposon="Shooter" [Zea mays]
MSQNNSSWMRMHFTTNEWQTNFRKFIQTTFGGTTRGETAPCPCSRCRCMSYRTQSQVQSHLVIRGFDESFIEEGNQANDS
DEGNAAAVVNDDETGDSGSVTELVSTLISGAIHEDIIGKINEEPNAKAKAFFNLLTEAKKELYPGCKEVTKVSFIVRLFQ
IKCMFGLSKSALAAVLQLFRLVLPEGHCVPDTLDKVQKVIHDLGLDYQKIHACVNDCLLFRKEYAAMDTCPTCGESRWQP
TISGHHEEATNKRAPRKILRYFPVIPRLQRLYMNSTTSEYMRWHKEGLVQDNKMRHPADSKAWKHVDNIYKDFATDPRNI
RLGLASDGFNPFGMVNVAYTIWPVILIPYNLPPWLCLKQPFWMLSMLIPGKNSPGNNIDVYLQPLIDELKDLWEKGVETW
DAKEKKNFNLRAILLWTINDFPAYGMLSGWSTKGKFACPYCHKDTDFLWLKCGSKHCYMGHRRFLPMDHRWRKNKASFNN
TVETREPPVPLSGEGVLQQYESFEQITFGKSTRKRKQREEETRWHNWRKKSIFFELQYWEKLLVRHNLDVMHIEKNICDS
ILGTLLGMEGKSKDGEKARLDMEHLGIRKDQHIVLGNGKYTLPSALYTLGKDEMIWLCQFLEGVKMPDGYASNIKRSVDV
NKCKVSGLKTHDCHVIFQKLLPIAVRNVLPENVALPLIQLSRYFNAICSKELSAEDLEQLSTSIPETLCRLEMIFPPAFF
DIMIHLSIHLAEEAKLGGPVCYRWMYPIERYLRTLKAYVRNKAHPEGSIAEGYILEECMTFCSRFLQDVETKL
>aF3D18-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSAVHCVPKKGGMTVIKNSKDELIPTRTITGHRMCIDYRKLNAATRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSILSDLIEEMVEVFMDDFSVYSSSFS
SCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGH
>aT19K21/T17A11-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
SIREVKYPNWLANPVVVKKKNGKWRVCIDFTDLNKACPKDNFTLPHIDRLVEATTGHELLSFMDAFSEYNQILMRLDDQK
KTAFITDRGTYCYKVMLFSLKNIGATYQRLVNRMFADQLGKMMEVYIDDMLVKSAHEKDHVMQLREYFKILNKFEMKLNP
EKCSFGVPSGEFLGYLV
>aF10A2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
GSIREVQYPDWVANTVVVKKKNGKDRVCIHFTYLNKACPKDSFYLPHIDRLVESTTGNELLTFMDAFSGYNQIMMSLENQ
EKTSFITDRGIYCYKVMPFGLKNVGATYERLINKMFNEYLGKTMEVYIDDRLVKSLKKEDHIKHLEECFTILNPYRMKLN
PAKCTFGVPSWEFLGYIV
>aT17A11/F15O11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVKYPNSLANPVVVKZKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRR
DGQEKTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEKDHVPQLRECFKILIKFEM
KLNPEKCSFEVQSREFLEYLV
>aF23C08-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVQYPDWMANNVVVKKKNGKDRVCIDFTDLNKACPKDSFPLSHIDRLVESTTGNELLTFMDAFSGYNQIMMNP
EDQEKTSFINDRDIYCYKVMHFGFKNAGATYQRLVNKMCHEYLGKTMEVYIDDMLVKSLKKKDHVKHLEECFEILNQYKM
KLNPAKCTGEFLGYIV
>gi|15723970|gb|AAL06402.1|AF378021_1 reverse transcriptase [Hordeum vulgare] (Gypsy_Ty3-family)
VRKEVLKFLEAGIIYPVAHNDWVSPVHCVPKKGCITVVPNDKDELIPHRIITGYRMVIDFRKMNKATRKEHYPLPFSDQM
LERLSKHTHFCFLDGYSSFSQILVAQSDQEKTTFTYPFGTFAYRRMPFGLCNAPATFQRCMMAIFSDFCEKFVEVFMDDF
SVYGSSFDDCLNNLDRVLQRCKDTNLVLNWEKCHFMVNEGIVLGHKISERGIEFDKAKVGAIKKMPYPTDIKGIRSFLVH
AGFYRRFIKDFTKV
>Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain)
DAAPVFDDLANVRVDETEVELSTSGHPLYVGSVFKNKQVIQQTMRLVAIKKCFRYKQTRSCPKRLEMVCVDRNCSWHLTA
HVIPNSKCFKITGYDSIHVCKIKTRKDYRKHATYKLLGEVMKNRYSSSQGGPRAVDLPQLVLNDLNVRISYSTAWRAREV
AV
>gi|15617438|dbj|BAB64937.1| TdcA1-ORF1-ORF2 [Daucus carota] Spm/En-like (CACTA-like)
LSIRHNLDVMHIEKNVFENIFNTIMAIEGKTKDNAKARADIALLCRRPELAIDESTRKYPKACYSLDKKGKEAVCKWLQD
LKFPDGYVSNMGRCIDMKKYKLFGMKSHDCHVFMQRLMPIAFREFLPNNVWEAVTELSLFFKDLTSATLKVSDMCRLEEQ
IPVILCKLERIFPPALFDSMEHLLVHLPYEARIAGPVQYRWMYPFERFLRHLKNNIKNKARVEGSMCNAYLVEEASTFCS
HYFEQHVQTKHRKVPRNDSSGGGENFEGNFSIFSHPGRASGCANVRYLDDREYMAAHNYVLLNCPEVAPYTEIFINMVRE
NNQSITDAEIDKCLESDFALWFKQYAQNPSLVPNEIVRDIASGPLRSVRSVPIFYVNGYKFHTRKYGANRSTFNSGVCIK
GSNYSETSNDYFGIIDEILILEYPRLPIKKTTLFKCEWFDPTPSVGTRVHLRFKMVEVNRKKKLSVYEPFILASQAMQVY
FCNYPSLRRDKMDWLVVCKIKARPLVELSQASQSHQEPYQDETPENLNRIDIRDIPTHLNDNEGILDLDDGEGSPEEEIE
LDSDSEEGRSSQSDDIHNYGSDSNNSSNGYCEALILSQTTIYQAAKSSGMSTRRIRLSSSSNPRNSTENTPVGSQQSERQ
HTPAQSQPNTPNVSTASANESANESADEGWVVGSMHNDGRLRIEVISGLLEPSGACSRAITDSISERQDPTGFNWKVVSK
EVKDFYFEEFKKSFVWRQEDKQIYKVWVKKARNRYSNFCSDARKKWEAGEVDNRVAMHVWLPWVEFWKTPDFQTKSKTQK
KNRRGGTDHYPPTHTGGSASLRTHAAVLAETNGKDPTPADVYLLTHTKKRDKKTFVTKKAEAVYNKVIEIREERSKPIEG
SDEPQIVDEDEIFLEAVGGLDKRNRIYGLGSLQSVIYGPESKSSTSTSRYSGSNFNKEYELMQVELQEMKEQVKELQETR
DKELEDMRNQMEEMKSQLALVFKNQNTN
>gi|15723964|gb|AAL06401.1|AF378016_1 reverse transcriptase [Oryza sativa] (Gypsy_Ty3-family)
VRKEVFKFLYARIIYLVPYSEWVSPVQVVPKKGGMTAVANAQNELIPQRTVTGWRMCIDYRKLNKATKKDHFPLPFIDEM
LERLANHSFFCFLDGYSGYHQIPIHPEDQSKTTFTCPYGTYAYRRMPFGLCNTPASFQRCMMSIFSDMIEDIMEVFMDDF
SVYGKTLGHCLQNLDKVLQRCQEKDLVLNWEKCHFMVCEGIVLGHRVSERGVEVDRAKIDVIDQLPPPVNIKGIRSFFGH
AGFYRRFIKDFTKV
>gi|15723981|gb|AAL06407.1|AF378027_1 reverse transcriptase [Secale cereale] (Gypsy_Ty3-family)
VRKEVFKLLEAGINYPIADSQRVSHVHCVPKKGGMTVVPKDKDEFIPQRIVTGYRMVIDFRKLNKATMKDHYPLPFIDQM
PDRLSKHTHFCFLDGYSGFSQIPLSKGDQEKTTFTCPFGTFAYRGMPFGLCNAPATFQRCMIVIFSVFFEKIVEVFMDDF
SVYGTSFDDCLSNLDRVLQRCEDTNLVLNWEKCHFMVNEGIFLGHKISERGTEVEKAKVDAIEKMPCPKDMKGIRSFLGH
AGFYRRFIK
>gi|15724011|gb|AAL06414.1|AF378050_1 reverse transcriptase (Cyclops) [Pisum sativum] (Gypsy_Ty3-family)
VRKEVFKLLDAGMIYPISDSPWVSPVHVVPKKGGMTVIRNDKDELIPTKVATGWRICIDYRQLNTATRKDHFPLPFMDQM
LERLSGQQYYCFLDGYSGYNQIAVDPVDHEKTAFTCPFGVFAYRKMPFGLCNAPATFQRCVLAIFADLIEKTMDVFMDDF
SVFGGTFSLCLANLKTVLERCVKTNLVLNWEKCHFMVTEGIVLGHKVSKRGLEVDRAKVEVIEKLPPPVNVKGIRSFLGH
AGFYRRFIKDFSKV
>Gypsy-4_AA_pol#LTR/Gypsy 1110-3143 [Aedes aegypti]
NQTLDVQRIHIHDLKSSNRFLIDTGADISVVPHSPKERLKPTASQQLFAANGTRIQTYGTKRITVDLGLRRPFVWIFVIA
DVKSPIIGADFLKHYDLLVDLRRNKLIDSTTRLEIENIHAVTEPVITTFDANSPFAEILADYQDITVLNMKHRSTKASTV
HQIITTGPPVFCRPRRLPVDKLKEAKAEFQFLMDQGICQPSKSSWASPLHLVKKSNDKWRPCGDYRNLNAITVPDRYPVP
YIQDFSSIMHGKKIFTCIDLQRAYHQIPVAPEDVPKTAITTPFGLFEFKFMTFGLRNAGQTLQRHLHAILGDLDFVYPYI
DDLCIASDNVEQHEEHLRIVFERLRQNGLVINAAKCQIGQESVDFLGHEVTSDGIKPKRSKVQAILDVPRPTNAKQLKRF
LGTINFYRRFIPRAAENQRMIGGNIRNDTTALEWNETTNDAFERCKQDLANATLLAHPSPEAKLALDVDASNTCIGAVLH
QITTNGPQPLAFFSRKLSESQQKASTYDRELIAMYEAVKHFHDTLQAREFCIYTDHKPLITAFQQRPEKATPTQQRRLSY
ISEYTTDIRHVSGEANKVADMLSRINTITTIEAIDYDRMAELQKIDPELKQFLENPPTNTTVQLKRLKSPLASTPIFCDI
SIETIRPFVQHEFRRTIMEKMHGVSHPGVRATTRLIST
>Copia-61_Mad#LTR/Copia 129-4166  [Malus x domestica]
MAGDKDESVKKGSASSSSTSNRHPTTTTRLEVDKFNGSNNFGMWQCEVMDVLYQQELDMVLEDKPEDIDDKQWTRINLHA
CAAIRSFLDKELKYPYMKETSAKELWTKLEEKYMTKSAENRLFLKKRLFRFQYRPGISMHEHLNDYNKILADLANLDVKI
PDEDKALCLLNSLPDDYDHLTTTLLYGKSEVKLDEVSAALVNHECRKKELKTHNSQTEAFVARGRTEERKSGKRGKSRSK
SRGKFPAKDECAFCRQKGHWKKDCPKLKNKEKEKAGSEANIAKSGDDDDFEFALASSYADGHSNEWILDSGCTYHMCPIR
EWFSNFEELDGGVVLMGNNNACKTQGIGKICLKMHDGTVRELSDVRYVPDMKKNLISLGALESKGLKITMEGGVLKAVYG
ALVVMKGTRRNNLYFLQGSTVIGGAAVTEAADADSTDTTRLWHMRLGHAGEKALQGLVKQGLLKGAKACKLEFCEHCVLG
KQTRVKFGTAIHHTKGILDYVHTDVWGPSKNASWGGSHYFVSFVDDFSRRIWVYTMKRKDEVLKIFLKWKKMIETQSGRK
IKTLRSDNGGEYKSDPFLKVCQDEGIVRHFTVRETPQQNGVAERMNRTLLEKVRCMLSNAGLGKAFWAEAXTYASHLINR
LPAAANEGKTPMEVWSGKPCTDYKFLHIFGCPAYYYVRESKLDPRAKKALFMGFSTGVKGYRLWCPDEKKFVVSRDVTFD
EAAMVNQNKHEGETEATETMSSSKQVELLKTPVVPVRSDVSNTSPTVNSDDEDEDDEEEAPTQEPPQQQDYIATRRSRRE
IRKPARFTDIVAYALPVIEDDIPSAYKEAVMSSECELWKKSMDEEMKSLHKNETWKLVQLPKGKKAIGCKWVYAKKMESL
GKDNVRFKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVVQFDLELAQLDVKTAFLHGDLEEEIYMSQPEGFKVA
GKENWVCKLEKSLYGLKQSPRQWYKRFDRFMIGQKYTRSHYDHCVYFRKLQDGTFIYLLLYVDDMLIACKSKVEIERLKT
QLSNEFEMKDLGEARKILGMEIERDRAKGKISLCQKQYLKKVLQRFRMNENSKPVSTPLASHFKLSASMSPKTVEESQYM
AQIPYANVVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKWILRYILGTVDVGLLFQQDKVTGQCVVGYVDSDY
AGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGVQQDHVDVHCDSQSAIHL
AKNQVHHARTKHIDVRFHFVREVIDEGDILLQKIGTADNPADMLTKPVSLHKFKHCLDLIGICKIC
>Copia-60_Mad_pol#LTR/Copia 2628-6278 via tfasty with COP2_MT, 2 frameshifts. [Malus x domestica]
MNGIIFMHVTNSINLFLGMTSGEVSCLADSATTHTILRERHYFTNFVPKNAPLTTLSGPSNLIEGYGKARIMLSNGTVLT
IKEALYSPRSGRTLLSFRDIRDNQYHVETTEENGSEFLCITSYEYGQKRIHEKLERLPSGLYITTIRGIEAHHVAGPMPG
FQSTLLLWHDRMGHPGRDMMRRILKSSHGHHLHPYVGLPPCKACSLGKLNTQPSITKIIHDPPKFLQRIQGDICGPIQPT
CGPFRYFMVLVDASTRWSHVCLLSTRNAAFAKLLAQIIKLRAHHPDYPIKSIRLDNAGEFTSQTFDDYCMSVGIEVEHHV
PHVHTQNGLAEAFIKRLQLIARTLVMRTKLPVSAWGYAILHAAMLVRLRPTATQPHSPLQLVTGYEPDVSHLRVFGCAVY
VPIAPPLRTKMGPQRKMGIYVGYDSPSIIRYLEPLTGDLFTARFADCHFDETVFPSLGGDKNANVPVERRELSWYAPTMS
HLDPRTAQSETEVRRIIDLQSIAQSMPDAFTDLAKVTRSHIPAANAPARIDVPSVRRNTAWEGRTVPEGGAAAPSTRHGT
LAASQSSAPTLKRGRPPGSKDSQPRKRKTAQTSDPSLNPTIAYSSVPTHEVILDYGDVLDETNRPPENREISVHYAVLDE
VWNRNEMIVDDAFAYTVATDIMLSDDIEPRSVDECRRRTDWSNWKQAIQVELDSLAKRKVFGPVAPTPPHVKPVGYKWVF
VRKRNEKNEIVRYKARLVAQGFSQRPGIDYEETYSPVMDVITFRYLISLVVSEKLNMQLMDVVTAYLYGDLDTEIYMKVP
EGLPLTGSNSSRPRNTLSIRLRRSLYGLKQSGRMWYNRLSEYLTSQGYVNNELCPCVFIKKSHSGFAIVAVYVDDMNLIG
TPAELEEIAVHLKSEFEMKDLGKTRYCLGLEIEHCSDGILVHQSNYTQKVLRRFNEDKAKPSSTPMVVRTLDAKRDPFRP
KEDEEEILEPEVPYLSAIGALLYLAQCTRPDISFAVNLLARYSNAPTRRHWNGVKDIFRYLKGTTDLGLFYTHESSRAAA
PSVSRVDSRLVGYADAGYLSDPHRARSQTGYVFTVGDTAISWRSTKQTLVATSSNHAEILALHEASRECFWLRAVMEHIR
STSGLTSVVDLPTTIFEDNAACIEQLKKGYIKGDNTKHIAPKFFYSHQQQQHQNIEVKQIRSQDNLADLFTKSLPKSTFQ
KLVQGIGMRKLSELNCL
>Copia-63_ZM#LTR/Copia 103-4692  [Zea mays]
MADNRAEAERLAAQQQVLDGERARLEADRRTFEEAQRAMQEQQRALEATTIAALHTQAVAVLNIRTLIPVVLDTDSPNYT
QWRGLFLLAVGKYELSDHVLSDTSLSTDPAWTRMECVVLSWIFGTISASLVQLVMSPGTTARRAWLSLEDQFLGNKETRA
LYLDAEFRNFTQGDLNVSDYCRRLKAMADALGDLGEPVQDRTLVLAVLRGLNERFAHLASLIRRAKPFPSFVEVRSDLLL
EELTMQNRPVVAPTALVATGQPASTGRRGTNNSRNNRRGGRNTRGNSASTPAAGQRSQVAQAAPPPRADLPWNPWSGTVQ
IWPHPGATSILGPRPNLAPQAPTGLYAVGGLAASSPTAAVPTGYATPPPATPTQGIGWNQADLLHSFNTMTLNPPSSGEW
YMDSGATSHMTSDAGNITTSYPPSPSHSSVIVGNGSTLPVTSIGSTTIPLYNRQFSLRNILVTPNIIKNLISVRQFTTDN
NCSIEFDPYGLSVKDLHTRSVIARCNSSGHLYPLLPSPPQAFITSSSSTLWHCRLGHIGDEALSKLSSTNSISCNKATES
LCHTCQLGRHCRLPFSHSSSRAKANFDLIHCDLWTSPVVSISGYKYYLILLDDCSHYSWTFPLRLKSDTFSTISHFFAYV
RTQFGTVIKSIQCDNGREFDNSVARHFFLNHGVVLRMSCPHTSQQNGKAERIIRSTNNIMRSLMFQASLPPSYWAEALHT
ATYLLNLHPTKTLQFRTPYHALYGVQPSYSHLRVFGCRCYPNLASTAQNKLSPRSTLCVFLGYPSEHKGYRCLDLSSNRI
IISRHVTFDETSFPFASNQCPIEPTSLDFLTDMDSVQLPVFSPAGNSHNVHTSPTQAAAGQQPSSPCAPVVLRLQPANGP
PGDSPPSSPPAQPTCGPRRELVGPSLAAAQPTSAPRAYSPGEVQATSGQTLPTHELPPSTTHECPPVCVEHTRHQITTPA
APGGLAPTVPVVSTRTGHRTAVSVSPTANTHQMVTRGKSGFRLDTDRLNLHVAAISPVPTSLRRALADPNWHAAMTEEFD
ALQSNETWDLVPRPSGVNIVTGKWVYRHKLRPDGSLERYKARWVLRGFTQRPGIDFDETFSPVVKPVTIRTVLSLALSRD
WPIHQLDVKNAFLHGTLSETVYCVQPSGFADSTHPDYVCRLNKSLYGLKQAPRAWYSRFASHISSLGFIEAKSDTSLFIF
SRGSDMAYLLLYVDDIILTATNYSLLQRIITALQTEFAMKDLGNLHHFLGISVTRQPSSLFLSQKHYILDILDRAGMTDC
KPCNTPIDTSSKLSSDGPRISDPTQYRSLAGALQYLVFTRPDIAYAVQQACLFMHDPREPHLALVKRILRYLRGTLDYGF
LIHKSSLDNLIVYTDADWAGCPDTRKSTSGYAVFLGDNLLSWSSKRQPTVSRSSAEAEYRAVANGVAEATWLRQLLLELH
NPLHHAAVVYCDNISAVYLSSNPVQHQRTKHVEIDLHFVRERVALGHVRVLHVPTTSQFADIFTKGLPSSVFTEFRTSLN
VRPPPAPTKG
>Copia-65_BRa#LTR/Copia 70-4181  [Brassica rapa]
MSDIKEEHEMSGVETRPSSIRFPMLNSTNYTVWAMRMKIALKVNKVWEAIDPGNKAEDKNNMAIALLFQSIPEALTLQIG
DHDTAKAVWEAIKARHVGADRVREARLQTLMAEFDRLKMKDEDTIDAFVGKLSEISSKTASLGETIEESKLVKKFLKSLP
RKKYIHIDASLEQVLNLNETSFEDIVGRLKAYEERVSEEEETRQDDQEKLMYTNAESQQGSYNGYGGRGARGRGGRSNWR
GRGRGRGSFYTRRDAYKQSNGQNQGQEKDISHITCFSCDKRGHYASDCPDKLLKLQETAENKANDTEEADELMMHEVVYL
NEKKVNPSGFETELDMKNMWYLDNGASNHMSGNRSFFVNLDETITGKVRFGDDSRIDIRGKGSIQFIFKEGEKKVLHDVY
FIPGLKSNIVSLGQATEAGCEVSMKGDVLMLYDKLGGLMVKTNRTKNRLYKVKLEVHESAECLKLVMTESNKWHARLGHV
NTETMKGMIRNKLVTGVPSIEVEKETCTSCLLGKQVRQPFPKSTNFRASRPLELVHGDLCGPITPSTPSQKRYVFVLIDD
HTRYMWTILLSDKSEAFDKFKCFKAMAEQKTKGELKMFRTDRGGEFMSREFQEYCSKNGVQRHMTAPYSPQQNGVVERRN
RTLLEMTRSILKHMKVPNNMWGEAVRHATYLLNRITTRALQGMTPYEALRSKKPNLSHVRVFGCVCHAKTDTVGRRKLDD
RSRRLVHLGTEPGSKAYRLYDPSSKKIVVSRDVVFEENRVWDWNKKTTSTLDSDMFLDGYSLIKEGAEERISESNDNANE
EVELGNEEDDNAEENGQPEVRRSSRIVSKPAYLDDYVLVAELECERLLMVINDEPYDFEEAKKMKVWLNACGEEISSIEK
NDTWELVDLPLGVKPIGLKWVFKIKRNADGTISKYKARLVAKGYVQRHGVDYDEVFALVARIETIRLVIALAACEGWEIH
HLDVKTAFLHGELKEEVCVLQPEGFQVAGKQNKVYKLKKALYGLKQAPRAWNTKLNKILLELKFQRCSKEPSLYRKEEKN
ELLVVVVYVDDLLVTGTSQRSIIEFKRKMSMKFEMSDLGKLTYYLGIEVQQYGEGIILKQERYAQKILEETGMSMCNPTH
IPMDMNVKMSKSSEEKSINETEYRRSIGCLRYLLHTRPDLSFAVGVLSRYMQEPKESHGAALKQVLRYLRGTTTLGLAFT
RTRKYELIGFSDSSHNVDDDDGKSTTGYVFYLDQSPISWCSQKQEIVALSSCEAEFMAATKAAKQAIWLQDLLGEVVGKT
SKKVTIRVDNKSAIALTKNSVFHGRSKHIHRRFHFIRECVENEQVDVEHVPGNEQRADILTKSLGRVNFLEMRRLVGVQD
VSKDGFKLKGE
>Copia-64_MLP#LTR/Copia 1227-5486 65.0% sim to Copia-113_AA, SW:1315, [Melampsora larici-populina]
MLSNANSSVSHSSFLIAQIPKLNDTNRVDWVLGLKTYLKGRKLWKHVERDTSLPEADLKDLDKVEQLECERASLLKVICA
TVSPTRLPTIRGIENPKVAYERLIEQATQDDGLEVASLIAKVATTRYTRSETVTTFLDGISDLHTKLAEATASDKDLSIS
DKLLAVFLLLSFPEEQFGTIRDQLFGDLKNLTTAKVFSRIRTKSALSSVDETPIALAVNARPPSRPPQRTTIPRTDKSPN
APCVLCEHWNFSHTNVVCSRQNCRQPSRPATNTHQSSANSLSDNEKIRRFNQLAAAGVIGFNAEAQGAHNPPPPVESNIQ
TPASSEIPTADCQFATSFNVVAEDASMEVSLTISNNYPPPTETHKATLADTACNRHMFGDVMLLDDLRDVNPVWIKVAND
DKSSRIMANKMGTAKLHAFKPDGSSTLVQIPNVLYSPSLPANLISITELYETGFKVVDPHYGTNTDDKNMYFSNSKHIIP
AYKDSGPGGFWKFYHYSEPSACAAISIKPNLSDLWHLHFGHLNNRSTSSVMEDVLRLNPSPPTTCEACTLGKQSRSSHSG
SLPRSQVPAYRIHCNLAGPFPSASIGGFLYSMALIDDATRRNWVMLLKSKSQAFDAFKRFHLMLSNQTSYKIAVFKTDRG
GEFTSAAFTNYLNEHGIIHEMGPPESPEQNSVVERFNRTISSRLRSQLIHGNLPVRLWGEVMMATSFVLNLCPSKSICFS
CPEYAWQTNALKIKSPNLPYNRLRVIGCLAYTIPPGHHHKLQSRSIRTIMVGYEKYSNAYRLWDPKSNRIMVSNDVVFNE
HEFPLRRLDVEFTKELTVLNEDNWDEMWETACVNNNKSDQVNKFLGIPNQQNESPPPPRRSQRQPQPVERLGDLVGYHTI
AETYQCYHSQVDDGPENDEPSYSKAMNGPNREDWLKAMAEEFTSLQQHSVGHLVEPPPDANILPGMWRLKRKRDEFSRIT
KYKARWVAGGNHQIKGVDFDLTYASVGMTDTLRTLYSLSAKDDLEMEQFDIKTAFLNGSIKHKVYVCQVTGFRDQDKPKH
VMMLDQSLYGTCQAHREFNDDLDIKMKRIGFVVCPVDNSLYTLRKQLSFVHVHMHVDDGMTFSNDRNLLNHFKEQLSTFY
KFCWNTNPTLHLGIHITRDRKQHTITLDQSHYCESMLDRFGMSNCNGVKTPLPQNLKLSTPTIEDSTEIENYRAAVGMLN
FLSVQTRPDIAFAVGYLARFNSRHNDAHWAAVKHLLRYVKWTIHFNLTFGEHKAKDKVVEGYADADYAGDIDTRRSTTGF
VFLVHGSLVSWKSRRQQSVTVSTTEAEYLAIGDCAKHGHWLCRLLEYLLQQPPIYVSISLPISNDNQGAVFLCNEASVNN
KSKHIDIRHHFIRELTREGRITVSHVSTKAMPADSLTKSVGPNILLESYNQLGIYEIKRC
>Copia-59_SB#LTR/Copia 42-4429 via tfasty with Copia-30_SB, 1 frameshift. [Sorghum bicolor]
MSSPTKTRGRSPAGKEKGDGSGSKSTDKSPCAPRRSPARRSRTRDARRIREVVVERIVREGGGSGNWPQLTRTNYYEWSL
RMKLKLQARRLWEAIEDDEADFDQDRGALDAICSAVPGDMVPVLATKETAKDAWEAIKTLRIGDDRVRIATAQNLRTEYE
GLALRDGESIEEFALRLTQRLATLGDPEDEAKVVRKYLRIARSRYKQLVVSIETLLDISTLSIEEVTGRPKAADDAEPAA
QHAANGKLLLTEEWVERYKKSSGSSHSGSSAGGRGKGRGRGRGRGAGGDSRGSRPPPDDPCPRCGKKGHWARDCRSKKKD
EDSAQQAHVAQEQEEATLMLAISSAQEEPAPPILTKSALPPSAPTPELFVVEKKVHAKLDDALDRDPTRWILDTGASNHM
SRSRAAFADLDARVTGNVRFGDGSVARIEGSGTVLFHCKNGEHRALANVYFLPRLTANIISVGQLDEGGYEVLVKHGVMR
VWDEDQRLLAKIPRSPGRLYTLEVTIARPVCLAARTDDDAWRWDQRFGHIHFAALRKMGRENLVRGLPVIDQVQQVCEAC
LAGKQRRTPFPQKALWRSTEPLQLLHGDICGPITPATPSGNKYFLLLVDDYSRFMWIALLPSKDAAATAIRNIQAAAERK
SGKKLLMLRTDRGGEFAAADFIDYCAQLGVRRQFTAPYTPQQNGVVERRNQTVVGTARSMMKAKSLPGVFWGEAVSTAVY
LLNRSSCKAIGGRTPYELWNGHTPAVQHLRTFGCIAHTKVTTPHQKKLDDRSRRTVFIGYEPGSKAYRVYDPTTRRVHIS
RDVVFDEAAAWAWTGTNPAEPDDFTVEEPDDPESSVITTTRTTTVVHPSSGSTSPAPSAPTTSPAPSMPALGSPAFAGTP
PSLGSTAHPQVEFATPPGAEVEDYLDADHDDDAPLRFRRVDNVLGGAPTPGLAHRELEERLLLASDAEPTSFEEAVRHEC
WRLAMLDEMTSIEASSTWKLVDPPAHAKPIGLKWVFKAKKDAAGIVTKHKARLVAKGYVQRQGIDFDEVFAPVARLESVR
LLLAHAACEGWAVHHMDVKSAFLNGVIQEEVYVAQPPGFILRGQENKLLRLVKALYGLRQAPRAWYSKLDESLIALGFRM
SESEHAVYLRGSGARRLVVGVYVDDLIIAGGHQIDIDTFKKEMQSTFKMSDLGLLRYYLGLEVTQSEEGITVCQSAYAAK
ILETAGLTGCKSSCTPMEPRLKLSKQSTSPAVDATHYRSIVGSLRYLVNSRPDLAYSVGYVSRFMENPTTEHLAAVKRIL
RYIAGTLGYGCSYQRRKKELPLLIGYSDSDLAGDIDTRRSTTGVLFFLGNNLITWQSQKQKVVALSSCEAEYMAATTAAC
QGIWLARLIAELRGQEAGATKLFVDNQSAIALSRNPVFHDRSKHIDVRYHFIRECVEDGRVMIDSISTDEQLADIQTKAL
TRERFCELRSRIGVHDVHNRHKA
>Copia-52_ZM#LTR/Copia 4685-8935  [Zea mays]
MASGVLQPDPSATPQSGALISSLVSAAQSVNITSLVPIRLDMVSTAYRRWRRLFHVVLGRFHLRHHVDGTPPRPDDAAWI
QEDLTVLMWLHATLADDLLDMVMDDDDGTAHQVWSKIANFFLGNKDSRAVQLEQDLHNLEQGDLSAAAFCHRLKTLADAL
ADCDRPIDDRALVHQLIRGLHPKFHVLKQMLPAMPSFPTFMEARDHLIVAENTLGSSKASGNESALTATTTTDNSGGFTN
SPSTRPDGDRSPFASRGRGRGGGGRWNGRGRGRGGRYGFNPRPPQLSPAALLQQLHAWLMSGSAWRAPWTGTTGPGVLGP
RPPVAAHAYNAAISPPLATPFATPTTQMSPATSPSFDTTALIHALHAASQPQQPAQSDWFMDTGASAHMTSDPGTMPNYC
SSSLHNSSCILVGNGSALPILGSGNTTLRTPHRSFHLSSVLHTPHLIKNLISVRKFTADNSCTVEFDQFGFSIKDLRSRA
EIMRCSSRGDLYPFQSSSSIQAPMALHTSTPSTLWHRRLGHMGHNSLDHILSQFSISNNRTHVCDACQKGRHVRLPFYNS
QTPTYFPFQIIHCDLWTSPVSSFTGYKYYLVILDDFTHYIWTFPMRHKSDVPSILMNFYAFTQTQFHLRIQSVQCDNGTE
FDNKTLRSFLSKNGTTYRLSCPYTSAQNGKAERSIRTINDILRTLLFQADLPPSYWVEALHTATYLLNRRPSKSINFNTP
YQILFGQSPDYSHLRVFGCLCYPNLSATMPHKLSHRSAPCVFLGYPADHKGYRCLNLNTNKIIISRHVNFDEDTFPFRTQ
QPLLTTPTTDPNNSPSVLVPGPPVVLLPSNSASTSHTTSCPPLQPDSTRAPISTPRTSPHASTSTLPSAPVFRYASPDIT
RHHMQTRGKSGIFKPKVFTNLLSTISPIPKTYRSALTDPHWRQAMHEEYNALMSNNTWCLVPKPAGANIITGKWIFRHKY
NPDGSLARYKARWVVRGFNQEYGVDYEETFSPVIKPPTIRTVLSIATSHSWPIHQLDVKNAFLHGNLSETVYCVQPSGFV
DPSKPHHVCKLVKSLYGLKQAPRNWFLRFTSYIRSLGFQASKADTSLFILHTSTNTAYLLLYVDDIILTANSNQFLSSII
LSLCREFSMTDLGPLRHFLGIQVHQTRTGLFLSQTQYAKDILQQAGMAHCNPVSTPIDTKSKLSSTTGDPVDDPTEYRRL
AGALQYLTLTRPDITYAVQQACLFMHSPRTTHMQILKRVLRYISGTINHGLHLHKSSGHHLIAYSDADWAGCPDTRRSTS
GYCVFYGGNLVSWSSKRQPTVSRSSAEAEYRGVANAVSEACWLRLLLQELRRPLTQATVVFCDNVSAQYLSTNPVQHQRT
KHIEIDLHFVRDKVALGEVKVLHVPSASQYADIFTKGLPCILFQEFRDSLNIKDGTG
>Copia-52_Mad#LTR/Copia 644-5428 via tfasty with Copia-12_Mad, 1 stopcodon. [Malus x domestica]
MSSSNFKVDGILGMLTIKLKDDNFAKWAFQFQSVLRGYKLFGHFDGTTVCPSKYVVSIEAGVTKEISEVFVNWESTDMAL
LSLLLATLSDEAMEYVLGCRTAHEAWINLVDRYASVSKSRVNHLKTELHTIQKGTDTIDKYLLRLKSIRDQLTAAGESIS
DNDIIIAGLAGLPKEYGVIRTVILARESSITLKEFRAQLLGVEREIDGEITVLSQSLSAMYVQGSTSGSNGASSSNAQTH
NHIPGNTGGIITAGSYGSTPPISESSLNNSLIQPNFQQPVYSAPPQQFxQPFYSAPPLQPIMFPGQPYGYGFVGNSTEQN
NSATQFNGGFQFGARGQSSNQYRGNNYRNNNTFRGRGYGSSNSRQSGHNSWSGNTNTRSNVVIECQICNKRGHTAVNCYQ
RNSNSSNSSFVIECQICGKRGHLALDCYQRNNYSFQGQSPPTSLSAMNAQQAPQFSPQDNWIVDSGASHHMTADINALTQ
VTPFEGSDKIIIGNGTGLSIHNIGSATIQTNNHLLLLNKILHVPRIARNLLLVKQLCADNKSWFICDESQFFVQDKRTRE
IVYHGKSKPEELFHIPVVPQKRGVQVSSSNPAAYLGKAIKSEVWHQSLGHPTQEIMSSMLQKSKISGYIDDKHTICVPCI
QGKMSRTPFPVRSNTCTFPFEKIHSDTWGPSPVKSLEGYRYYVTLIDEYTRYVWIFPMSNKSDVFTIFVRFYNFVLTQFG
KHIKSLQTDGAGEYVSHRFTLFLAQKGIVQCISCPYTPQQNGMAERKHRHIVETAITLLNTAGLTPEFWYFACAHSVFLI
NGMPCKTLLMCSPYQCLYQKVPDVQSLKIFGSAVFPWLRPYNANKLQARSAMCIFLGYSMGYKGVICFDLKTRKYIISRH
VIFDESCFPAKLPQQHTVIDQHQQASQQFMPVLIPVPVRHRGSISSTQLPDLVTSDTSGHNQPCTSEQGNVSISGSQDSD
TVSSDHLTLSTPVDTPHLLPVLDPAQLQVVLPFTASSSSNNSDPNDVRPNGPQTRLQTGAISRQNYASFIASLPQLLSLQ
LMDSASEIQHMEQCHGGFSFLADISDVEEPKNFKSAVHKVQWQKAMQEEFDALKAQGTWKLVPPSSNQSVIGSKWVYKVK
KNPDGSVSRFKARLVAQGFTQEHGIDYSETFSPVVRHTTVRIILALAAQFSWPLRQLDIKNAFLHGDLEDEVYMTQPQGF
VDPQQPDHVCRLVKSLYGLKQAPRAWNSKFTSYLPSLGFTTSLSDTSLFIKVDDADINLLLLYVDDIILTGSNPTKVQSV
INDLAGVFDLTNIGKLTYFLGIQVQYHTDGSLFLNQSKYAKELLKKAGMESCKPTSTPSKPHTQVLANERVLLTDPSQYR
NVVGALQYLTFTRPDLAYSVNMVCQYMTQPTDVHLHLVKRILRYVQGTVHCGLHYTKGSDFKLTAYSDSDWAADITTRRS
ISGFVVYLGSNPISWQSKKQSTVSRSSTEAEYKALAHCAADVFWIRSVFKDIHQHLSTPPSLYCDNLSALALSSNPVFHS
KIKHLDIDYHFVREKVQKGDIHVHYIPTDDQVAYVFTKGLHSPLFLKHCRHLGLGVLSSLQQTKLDSSMLSLRGE
>Copia-53_BRa#LTR/Copia 63-4162  [Brassica rapa]
MEDVKDIPGENNKDTGPASIKFPMLTSSNYTVWAMRMKVALKVSEVWETIDPGTKDEKKNNKAIAYLFQSIPEALILQVG
EIDTAKEVWDAIKSRNVGAERVREARLQTLMAEFDRLKMRDEDTIDMFSGKLSEISSKSASLGEILEEPKLVKKFLKSLP
RNKYIQIVASLEQVLDLNTTSFEDIVGRLKAYEERVSAEEEEKSDDQEKLMYAANSGSNQEGYSNNYGNNRGRGRGGRSS
WRGRGRGRSSNFERQREAYRQGQGQNRDISHITCFKCDKLGHYASDCPEKELKLQETCEKKEDDTHEADELMMNEVVYLN
ERKVNPKNFETNLENTWYLDNGASNHMSGNRLFFQDLDESITGQVRFGDDSRIDIVGRGSIRFTFKGGEKKVLNNVYYIP
NLRSNIVSLGQATEAGCEVRMHDNTLLLFDRSGELMVKTTRSSNRLYKVTLQADQIRCLQVMSSDSSKWHARLGHINTES
MKLMINKELVLGIPKLNIDKETCTPCLRGKHARASFPQSTTYRASKPLELVHGDLCGPITPSTPAKKHYVFVLIDDYSRY
MWTVLLKEKSESFKKFKSFRMIATQETQTEIKTFRTDRGGEFTSHEFQTYCDKHGINRHLTAPYSPQQNGVVERRNRTLL
EMTRSILKHMNLPNYLWGEAVRHATYLINRVATRSLDGKTPYKVLRMRKPNLSHLRVFGCVCYAKTDSAGRKKLDDRSRA
LVHLGTEPGTKAYRLLDTTSKRIVVSQDVCFLEEKEWSWDKKENDETEGFSVMIKESNDDPIAASETTNETSTASDEARA
DISDEENDDGDVQPQLRRSTRETSQPAYLDDYILLAEAECEQLLMVINEEPWDFTEAKELDVWINACKEEIVSIEKNHTW
DLVELPTGVKPIVLKWVFKIKRNADGSVIKYKARLVAKGYVQRHGIDYDEVFAPVARIETIRLVIALAASKNWEVHHLDV
KTAFLHGELKEEVFVTQPEGFIVAGKEKMVYKLKKALYGLKQAPRAWNAKLNQILCGLSFLKCSKESSLYRKEAKRGLLI
VVVYVDDLLVTGSSLAMILEFKKEMSKNFEMSDLGILTYYLGIEVHQHEGYIVLSQEKYAMKILEETNMSSCNMTHIPMD
INVNLSKSSKEKTVDEKSYRRNIGCLRYLLHTRPDLSYSVGVLSRYMAEPKESHAAALKQVLRYLRGTCSLGLRFKRSTN
LNVIGYSDASHNVDADDGKSTSGHVFYLGESPITWCSQKQEIVALSSCEAVFMAATEAAKQAIWLQELFSEVVGEDCKRV
TIRVDNKSAIALTRNPVFHGRSKHIHRRFHFIRECVENDQVEVEHVPGTEQRADILTKSLGRTKFVEMRILVGVHDVCKS
EFKLRRE
>Copia-54_SB#LTR/Copia 37-4443  [Sorghum bicolor]
MASSSSALAAAYSLGFYPVSEKLTRANFIVWKAQVLSAIRGARMSHFLEAEAKPPAEFLQKKPTDPADAAPIVNPEWQDW
IAKDQQVLSYILTSCSREILQQICTATSAAEAWAAITGMHGSQSRARLISTRMALSTASKGETTMSEYFTKMKTLGDEMA
TAGKRLEDEELVSFILTGLGPDYESIVSAIAARVEPISVGDLYTQLVAFEQRTEINGGSGGGSSHSSANMAARGGRGGFN
RGRGGRGPGGRGQKNGGGRSGGRGRGNFNRSDDICQLCGLEGHTVLRCFKRFDATFTGPQQKKKIASSATTSYGVDTNWY
MDSGATDHVTGELENLTVRDKYNGGEQVHTASGTGMRISHVGHATLHSQTSNLHLKNILHVPNATKSLVSVNRLTRDNNV
YLEFHPDHFIVKQQVTGKTVLKGRCEGGLYPLKSGSNKQALLGIYKSTESLWHHRLGHASLPVVQQILNRHNISFSKDQS
HKLVCDACQQGKSHQLPYPKSTSVSSNPFELVFSDVWGPAPTSVGRHDYYVSFIDDYSKFTWIYLLRRKSEVFQCFSDFQ
NMVERQFNRKILAVQTDWGGEYQSLSHFFSRIGISHHVSCPHAHQQNGSAERKHRHIVEVGLSILAHASMPLKYWDEAFL
TAVFLINRLPSRVISNETPYERLLGSQPDYSFLRTFGCAVWPNLRPFNTRKLQFRSKRCVFLGYSNRHKGFKCLDPLEGR
IYISRDVVFDESVFPFASLRPNAGARLRAEITLLSDCLLNPSSSFGNASLRDSSLNNPIPTNASRSSAVAHDDAGENCVQ
TDAGIGENGDRLRRHHMSPRLGSADPHDDSATQPGHDSLRLLGSSSAPAPSSAPASSISTPTPGSPGSSTTNSSHPTCSS
DVDATSTSSPQTDPGHNGVNSPDGSSGSSPPTQPVVSDIRASPPPGHRLVTRLQQGIRQPKIRTDGTVRWCNFGATSAEE
PSSVSEALGDSKWLSAMEDEYGALLKNQTWHLVSKPKGKNIIGCKWVYKVKKKADGTIDRYKARLVAKGYKQRYGLDYED
TFSPVVKAATIRLILSLAVSRGWSLRQLDVQNAFLHGFLEEEVYMHQPPGFTDPKHPDFVCKLNKAIYGLKQAPRAWYAR
LCSKLIALGFTPSTSDTSLFYFNKDGITVFILVYVDDIIVASSSVDATRVLLTNLEREFALKDLGDLHYFLGIEVKRSRE
GLHLSQERYATDIVKRASMDKSKPVETPLSVTDKLSAMDGVPLGQDDATRYRSVVGALQYLTLTRPDISFAVNKVCQFLH
SPSSVHWVAVKRILRYVHGTVNLGLNIRRSNSMIVSAFSDADWAGCVDDRRSTGGFAVFLGSNLISWSARKQATVSRSST
EAEYKSLANATAEMIWVQKLLTELKIPHARVAQLWCDNIGATYLSRNPVFHARTKHIEIDFHFVRERVAQKLLDIRFLPS
CDQLADGFTKPLSTTKMKDFRVNLNLDSG
>Copia-54_GM#LTR/Copia 47-4476 via tfasty with Copia23-PTR, 82.3% SW:4593, 3 frameshifts and 8 stopcodons. [Glycine max]
METPTIGVLKQEEENSLLAELTARMTQALNLKQTQSQSSSFEATIxIGIKIDGANYALWSQIVEMYISGKDKLGYINGDL
PEPPQTDPAFKKxRTKNAVVKGWLINSMDLKLVSNFIRFLTAKVVWDSIATTYFDSGDTSQVYDLKRRVTRLKQGDRSIE
TYYNNLQGLWREIDFRRPNPMLCDADIQRYNLILQEDRVYTFLDGLDDRLNKIRADVLQMQPFPMVEQAYALVRREDLSH
SVVMVNEDIASGGAMLSRRGHKPQHRLSLQMTSNGKPTTKSQSQGEGEGCKHCGNMKHTKETCFKLHGYPDWWHELKEKK
KRESSGGNNSGRAALVSVEPQLSLITQQESPSGHASQNDSGNQGSSYSYSKQGNRDNWIIDSGATNHMTFDLHDFSKTSQ
LNRTCIDNANGVTYPVIVAGTFDFSPSFSLPNTLLVPSLFNKLLSIGQVTKELNCCAIMYSNFCLFQDILTKEIIGRGTK
REGLYCLDDFSYGRANNVHSIGVKERQIWLWHNRLGHLSFRYLSYLFPELFTKVSESDFKCEASIQAKSHRVPYPISLNK
CDTPFSIIHSDVWGPAPINIPFGVRWFIMFIDDCTQMTWLYSLKHKHEVFEIFRSFHNMMxTQFSAKLLILRSDNGGEYD
NEKFHKYFKEHGLHHETSCPxTPQQNGVAERKNRHILEITRALLSVAYVPKCFRIDAVVTAVYLMNRQPSRVLNYKTPLQ
VLAKHVTLPYVLMLPPRKFGCVTYVHIPKNQRMKLDLCVVHCVFLGHGAHKKGYCCYDPVTRRLYTTMNVTFIESENFFT
FQSSHSSRQGEMMSEEQNWKDWPGFEASNDVGVDVQSRELETILIDQRKETKDVENNExVIAEIEESAETESEQPLLVEA
ETESEQPFHDLIVLQSxSPENISEVQVLNSPQNISIGYKLPFRHNWGQPPNRYSPDHGTSKSKHPIANYVSTHKLSKPLK
ALVYNLSADDVPYTVNEADPKWIQAIEEEMKELQENNAWSLVPLPEGKKIVGCKWVFTIKHKADGSVERYKARFVAKGFT
QTYGIDYLETFSLVAKLNTIRVLISLVANLDWPLHQFDVENAFLHGDLEEEVxMDIPPGFVPSTQRSVVCKLKKALYILK
QSPRAWFGRFSFAMRKHGFKQRHSDHTLFLKHQQGKVTTLIIYVDDMIIIGNDEKEISRLQEHLATEFEMKNLGGLKYFL
GIKVAQSKRGIFLSQRKYVLDLLSKTGMLDCRPANTPVTQNHGLGEFPDQTPTNKKRYQRLVGKLIYLxHKRPYISYVVS
LVMHCPSEDHMNVVFRILRYLKSSLGRGLMFAKKKHLHIQGYTDADWAGSISDRKSTSGYLTFVGGNLVSWRSKKQKVVA
LSSVEAEFRGMTKGVRELLWLKRLVEEVICSTQDTMDLFCDNKAAIAIAHNPVQHDRTKHVEGDTHFIKEKLEDKIIQFP
FVKSEDQLTDILTKVVSSKIFHNSLDKLGIEDIYAPT
>Copia-66_GM#LTR/Copia 1241-5287  [Glycine max]
MNISCDLPILKGDNYKVWKERVLLHLGWMDIDYAIRKDEPPAITETSEPDAVDLYEKWERSNRLSVMFIKTNISASIRGS
VDQHDKVRDLLKAIDEQFTTSEKSLASTLIMQFSSIKLTGTRGVREHIMRLRDIVAQLKTLEVTMSESFLVHFILCTLPQ
QYTPFKISYNTHKDKWSINELMTMCVQEEERLIMEEGEKVNLTTSNSGKDRKKSVGTNKGKIPTQPTIKKESKCFFCKKK
GHMKKDCPKFKSWFEKKGTPFAFVCYESNMINVNHNTWWIDSGSTIHVSNTLQGMESLRKPVGSEQCIYSGSRMSSHVEA
IGTCVLVLSSGFKLHLEKVFYVPSFCKNLISVSKLAPLGFYFNFTDFGFNLLNKSEIIGCGQLVDGLYSIELQNDATSMH
VSVGLKRCIVNEESSMLWHRRLGHISIERIKRLVNEGVLSTLDFADFETCVDCIKGKQTNKSKKGAKRSSNLLEIIHTDI
CCPDMDANSPKYFITFIDDYSRYMYLYLLHSKNEALDAFKVFKAEVEKQCGKQIKIVRSDRGGEYYGRYTEDGQAPGSFA
KFLQEHGIVAQYTMPGSPDQNGVAERRNRTLLDMVRSMRSNVKLPQFLWIDALKTAAYILNRVPTKAVSKTPFELFKGWK
PSLRHIRVWGCPSEVRIYNPQEKKLDPKTITGYFIGYAERSKGYRFYCPSHNTRIVESRNAKFLENDLISGSDQFQNISS
ERDHYEAEPSGTSNRLVVIPTPQVKMGVRQPVIEVPQAVESDHVDRVVCEEQHDDIEQTGEEPVEQVPQQDDQTTLRRST
RIKKTAIPSDYVVYLQESDYNIGAENDPETFSQAMSSKESNLWYNAMRDEMDSMASNQVWDLVELPVGVKAIGCRWVFKT
KKDSEGNIERHKARLVAKGFTQREGIDYRETFSPVSKKDSLRVILALVAHFDLELHQMDVKTAFLNGDLEEEVYMKQPEG
FLSSVGEHLVCKLNKSIYGLKQASRQWYLKFHEVISSFSFEENVMDHCIYQKVSGSKICFLVLYVDDILLATNDKGMLYE
VKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKDCSPSVAPIVKGDKLALSQCPKNDFERE
HMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDCLEVIGYSDSDF
AGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATSTMEAEFVSCFEATSHGVWLKSFISGLRVVDSISRPLKLYCDNFAA
VFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHVNTELMIADPLTKGMPPKNFKDHVVRMGLGSMM
>Copia-78_BRa#LTR/Copia 14-4152  [Brassica rapa]
MEDTEPISTTPSLSISQCVTLKLSSKNYLLWKTQFESFLSSQSLLGFVNGSSTRPASTVTVGTGEEATEQANPEFVKWVR
KDQLVMAWLFGSLTEDALRSVYGLHSAQEVWFTLGKKYNRVSATRKLDLQRKLQGMTKGQKSMTDYLSDVKGVCDQLDSI
GCALSEQEMIYGALAGLGKEYESICTVIEHSMDSVNEMSFDDAVFKLTTFDDKLKVLNNPPEPSPHLAFHAGRGYSSRGR
GGNSYRGGYRGRGSNNYSTRGRGFSQQFTGSSGTRPTCQICGRYGHSAARCYNRFDQDYDSSDTVHNALATMRLSDQERQ
SGAEWYPDSAASAHITNDSNQLTSSAPYLGNDQVIVGNGDFLPITHVGSIALQTPQGILPLEDVLVCPSITKSLLSVSKL
TSDYPCEFTFDATSVCVKDKETSRVIAQGSRHKDLYMLKDARFQAFYSSRQQATSDGVWHQRLGHPHKDILQFLAKSSAI
VMNKRDSQLLCDACQIGKSCKLPFLSSESVSVKPLDKVHCDLWGPSPVVSSQGFKFYVIFVDDFSRFTWFYPLKSKSDFY
SVFLRFQTLVENQFQNKIKQFQSDGGGEFISTMFLTHLATSGIKHLLSCPHTPQQNGVSERKHRHITELGITMLYHSKAP
QFLWVEAFFTATFLGNLLPSSVLADHKSPYEKLFGHTPVYTSLRVFGCKCFPYLRPYMKNKLDPKSLPCVFLGYNEKYKG
YRCFYPPTGTVYISRHVLFEEHSFPFADIYSSYHGTVATPLRSAWLQTAVTLVPEPEDLTSQHTEEEFSPIQKQKQVVLP
TQGPSEPLPLNGEDNHHGDNDLEPEQPEVVNVQHHSMTTRARSGILKPNPKYALFTIKESHTEPRTVKAALKDKAWHGAM
SVEIDHMHETETFELVPPEENQNPIGCGWVYKTKLNADGTVRTLRARLVARGNEQEEGVDYLETFSPVIRTATIRAILHV
AVTKSWSVRQLDVQNAFLHGDLKEKVFMKQPPGFEDPERPEYVCRLKKAIYDLKQAPRAWFDKFSFFLLKFGFQCSFQDP
SLFIYHQGSDLIYLLLYVDDMLLTGNNPALTEQLLQSLNTEFRMKDMGEVHYFLGIQVHHDDKGLFMNQSKYAQDLLHVA
GMLDCAPVTTPLPQKLDQLPGQDEFFSEPSYFRSLAGKLQYLTLTRPDLQYSVNYICQKMHQPSVSDFQLLKRILRYVKG
TTEMGISIHKNSDSTLICYSDSDWAGCKDTRRSTGGFCTFLGSNIISWSAKRHETVSKSSTEAEYRTMSLAASEVAWLQN
LLQTMGLTQQRLPLLLCDNLSAVCLTANPRFHKRTKHFEVDFHYVRERVAMKKLEVKHIPATLQIADVFTKSLGKDSFCK
LRVKLSVSNHSTLSLRGCIN
>Copia-77_ST#LTR/Copia 104-3970 via tfasty with SHACOP18_MT, 84.4% SW:4436, 4 stopcodons. [Solanum tuberosum]
MENAGSFSAMAPPVFDGENYQAWAVKMQVYLEASDLWEAVEEDYEVHPLLGNPTMAQIRSHKEKKTGKSKAKSCFFAAVS
ATIFSRIMTCNSAKAIWDFLKKEYEGDERIRGMKVLNLVREFEMQRMxQSETIKEYSDKLLGIANKVRILGNELTDNRIV
QKILVTLPERYEATIASLENTKDLSKLSLAELLSALQAQEQRRMMRHEGSIEGALQAKLxFGSSARGNKRKGKKGNHENY
EATTTRNGVTATSNNREGKYPPCQHCGRKNHPHFKCWRKPEMKCRKCHKLGHAEIICKEKRLQQPNDAQIADQQEDTQLF
VATCFASKNSSESWLVDSGCTNHMTSDEKLFRELDRSVKSRVRTGNGEYLPAKGKGTVAIESYKGTKLIYEVLFVPEIDQ
NLLSVGQLLENGFKLLFENKACLISDPSGQEIFRIKMQGNFVSLNPLNEEHIAFTSQLTVAETWHKRLGHFHHKALLFMQ
RSKMVNGLPKLEENRSSCKACVLGKHTRLPFKSSTWRAREKLQLIHTDLCGPQRTPSLNGSRYYIIFIDDLTRMCWIYFM
KFKSEAAGIFMKFKSWIENQSGSKIQVIRSDNGTEYTSDMFNSFCEEPGIxHQLTVPYSPQQNGMSERKNRTIMEMSRCL
LHEKNLPKKFWAEAANTAVFLLNRLPTQAVEGKTPFEAWYGVKPVLKNLKIFGCLCFSYVPQVKRDKLDKKADLGIFIGY
SLFSKAYRIFQPQTDKIMVSRDVQFLEDEQWEWNEESRVKNHNSQLDYDDLVDDQPIRGTRSLSDIYERCNVAVFEPAGY
EEAKMDQNWTNAMKEELTMIEKNQTWKLVERPQDRKVIGVKWIFRTKLNPDGSVNKHKARLVVKGYAQVWGVDFSDTFAP
VALLDTIRMLLAIAAQKNWKIFQMDVKSAFLNGLLQEEIYVEQPEGFSVPGHEDMVYLLKKALYGLKQAPRAWYNRIDNH
LLGLGFKKSLSESTLYVKKVASNIIIISLCVDDLHVTGNNTGLIEKFKExMMKVFEMTDLGEMTYFLGMEIKQTQNEVFV
CQKKSMKEILKIFRMEECKSVSTPMNQKEKLKKDDGAELVDEGVYRSLIGCLMYLTTTRNCASELHMMAAKRVVRYLKGT
LTYGIRFSKSHNFKLREYSDSDWGGSTGDMKSTSGYCFTFGSGCFSWCSMKQEIVAQSTAEAEFIAAATTVNQALWLRKI
LIDLRLEQAESTEILVDNQASIAISKDPVFHGRTKHFNIKFYFLREVQKNGEVVLFYCKSENKVADIFTKSFHVSRFKFL
REKLGVCSS
>Copia-80_ST#LTR/Copia 91-3594  [Solanum tuberosum]
MSENGTAANIPVSENVSATIENNSTVSIGDLQHSASTGSCSLAFTGISYSFITNVSDKLSPTWVVDSGATDHMTSLFHLF
ISYSPCPSYKKITIVDGSVITVAGQGDIPLGKSLILKDVLHIPKLSANLISVQKLTKDSKCQVTFFPSYCLFQEQNTKEM
IGRASEKGGLYCLDFHNGEYISKNSLSSSFLSESIMSNKEKVWLYHRRLGHPSFYVIKRMFPSLFKDLIVESFHCDDCEI
AKHKRTSFPISHKRCQTPFSLIHSDIWGPSPIPNISGARWFVSFIDDCTRVTWIYLLKQKSDVSQILPTFFNMIKTQYDV
PIKRFRSDNAKDYFNQNLSVFFQKEGIIHESSCVNTPQQNGIAERRNGLLLDITRSLLFHKRVPKQYWGEAVLTAAHLSN
RMPSRILNFQSPLDTLRNFFPNFEISNKLVPRIFGSVAYVHIHSQNRGKLDPRALKCVFIGYSPTQKGYKCYQPSSKKFF
VSADVTFDESESFFNHSYNQGESLKGKEPLDLSLFDLSISSRAKFLPESPLLQSPESLNPNEPIESPNPNIDNGILENNL
PLQVYSRRKRLTDQTTRLQSSPQVTTPDTHLELVEPSETPNQTDHEEEFNQPNVLDLPIAIRKGTRTCTQHPLSLSMTYQ
NLSPSHKAFLCNLHTIPIPRNLSEALGNKEWEKAMKVEMEALEKNKTWDIVELPKGKRLVGCRWVFTVKYKSDGSIERYK
ARLVAKGYTQTYGIDYLETFAPVAKMNTVRILLSLAAVFNWNLQQFDVKNAFLHGDLDEEIYMEVPPAFESKKGMVCRLK
KALYGLKQSPRAWFGRFTKVMIKLGYRQSQGDHTLFIRHSKTGKVTALLVYVDDIIVTGDDSEEIQNLKKCLLKEFDIKE
LGKLKYFLGIEVAHSKQGIFISQQKYVLDLLKETGKLGCKPVATPIEYNHRLCNAPEDSVVDKGLYQRLVGKLIYLSHTR
PDIAFAVNVVSQFMHDPREMHLQAVNRILQYLKGSPGKGILFKRGGNMVLEAYTDADYAGSLVDRRSSSGYCTFLGGNLV
TWRSKKQNVVARSSAESEFRSMAMGVCELLWLKIILDDLKIRWEGPMRLYCDNKSAISIAHNPVQHDRTKHIEVDRHFIK
EKLDNGLICTPFVSTKDQVADVLTKGLPNNMFQDLISKLGMEDIHSPA
>Copia-81_ST#LTR/Copia 88-4611  [Solanum tuberosum]
MGNVEEQIDHKHPLFLQPSDTPGSMLIPIQLTGTENYGLWSRSMKIALLGKGKLGFVNGNYRREKFSETQSDAWEKCDAI
VHSWIMNSVSKNLLNGIVYGSSANAVWEDLEERFNKINRVRVFQLHREITNLAQGTHSVSVYYSKLKELWDEYNTMISTP
KCDCPKSKEYADHLQEQRLLQFLNGLNDSYDQTRRQILMKTVAPTVSQAYAMISEDESERKISCSQVATAHDRFNDPTIM
QASRDQMYRGKKPIPKCEYCHVRGHCKEQCWKLIGYPDDYKPKGRLNGNHQTRGQYHTTQPQFFANGKNGGQSFANVNNV
CGVGATSAPPDGTTSHDNSGSKHMADVQGQYFTESQYQQILSMLNKDANEGQQAVNSSGTITSFHSHIPHSEWIVDSGAT
HHITASLESLMRSVEVNNFSHDKVYLPTGDKADVTHIGDTHLFNESTVKNVLFVPAFRFNLLSVSRLTKDLSCFVSFYPD
FCVFQDLFSGKVRGIGKEQHGLYIFRSGGATKSIRQGQIHQCAAEIKITEGNDYHLWHLRLGHPSRSTMKEVDIVKGNYS
SHTHENCSVCPRAKQTRLKFPISSSKSSFAFQLVHLDLWGPYKTVTLDKKSYFLTIVDDHTRFTWVYLLQLKSDVIVALK
SFLPMIKNQFNADIKVIRSDNGTEFFNSQCNDLLTQHGIVHQSSCVHTPQQNGRVERKHRHIMDTARALRFQANIPIKYW
GLCVKAAVYIINRLPSSVLEGHTPYEALYKTRNHINHLKVFGCQCYATNLVKHDRAKESVFMGYSETQKGYILLDLSTNI
FFVSRDVQFRENVFPFSKKAPKVTVENNHMNMEQDAVQNSPLMNIITDHADMVPEDLLHAQNDACSNPDESGEDLLPENH
GVIQDGVSFQQLVADDTQAADTGGTQVNEHAKLDGLSEDILMQPAETTPSAPYTRKSHRQVREPIWMKDYTTQKKGSTSL
YPLAQYISYEKTSPKYQCYLANFSKMVEPQRFKEAVNDPRWIEAMKHEVQALEYNKTWEVVPLPTGKNTVGSKWIYKIKY
KSNGEVERFKARLVAKGYSQREGLDYHDTFSPVAKMVTVRSVIALAASRGWNLLQMDVYNAFLQGDLEEEVYMELPEGFR
SQGETRVCKLLKSLYGLKQASRQWNIKLTDALVNAGFSQSNHDYSLFTMKEQDDIVIVLVYVDDMLITGSNNTMIEKVKH
VLNHKFKMKDLGELKYFLGIEILRSEKGVLLNQRKYVLELISEMGLSGSKPAITPLEYNQKLTTLEYDEATNTTGDELLS
DASVYQKLIGKLLYVTITRPDISFPVQTLSQFMQRPKRSHWEAALRTVRYLKNSPGQGILLQAGYTQKLTCWCDSDWAAC
PNTRRSVTGYAVKFGESLISWKSKKQQTVSRSSAEAEYRSLAAAVAELTWLKGLFEELDVQIDIPINICCDNMSAIQIAE
NPIFHERTKHIEIDCHFIRDKIKEGTVKPIYVHTKEQQADLLTKGLTSIQHMYLLSKLGVLNVLEPPA
>Copia-81_Mad#LTR/Copia 152-4430 via tfasty with Copia-45_Mad, 6 frameshifts and 1 stopcodon. [Malus x domestica]
MATAANSSNSPSPPPANPNSPANLPHSDISNPSIMSIGSISIANVAGMVPTKLNRQNYITWRSLFIPVLKRFKLLGLVNG
EDLCPPKFVRNSSGACVLNASFETWCERDQILMIWINSTLSEDLLPLTIGMEDSRSLWQSLERRFSGASRTHVHSLRSKI
QTIQKGDSSMTDFLNSIKDISDKLAAAGEPLSESDLVAYILSGLPDEYESFVDSIETRNESVTADELHGLLLSKEISLQK
RKTRASSSSTAPFHAYAAQSATSGGNSNRGNSHGRFQNRNRYNQNRNFGGNKPNNWNNNNSSGILGAGPSRQNFGQSSSS
GRSVQCQLCLQYGHWAPTCNRLSQFALNNFTQAPTAMSAMTSSAPPSYWLTDSGASHHVTPDPSALNSAIPYSGSDQLFV
GDGKGLCISHTGSALIRTKNATFRLNDVLLVPQASHNLLSVYKFVYDNWCSLTFDPFGFYVKDLRTGKMLFQGPSEGGLY
PFYWNASNGVSGIAISPTALMIAKADIHIWHRRLGHPSSGALHSVVHKNHLPVIGSVNNLSVCTACQLGKASRLPFSTLP
CTSTRPLQLLHTDVWGPSPTSSCTGYRFYLIIVDDFTKYSWLYPLYFKSDVFSTLKTFILKIQTLLDFKVQSIRSDSGGE
FLNKSLQGFLNDQGITHQLSCPHTPEQNGCAERKHRHVVEMGRTLLSQSGLPAKFWVEAFQTAIYLINRLPTSVFCDQSL
GTLFHASPKYHTLKTFGCACYPWLQPYSSDKLDSKSKQCVFLGYSLNHSGYRCLDPITNRLYISRHVVFDESLFPYKHLS
SQVSLTVHVSPSPPPPMSLSSIASVHPEKQPTCSSPEAAMHLSIHIFDCxTDPTSSSIRVHTYSSSIFQPCRVSTLHPPA
PVNTHPMITRAKAGIHKPKVFTATKHQLPSTVDSLTKLPPTPSTFLQASKHSHWMEAMQSEFQALQSTGTWELVPNNSNY
NLVGCKWVFKVKHKPDGTIERYKARLVAKGFHQQEGLDFSETFSPVAKPTTIRILLSIAVNYDWFIHQLDVSNAFLHGHL
KEDVYMIQPPGFVDPSKPHHVCKLRKSLYGLKQAPRAWYEAFYNAILSLGFSSSYSDTSLFIKRDTSITFILVYVDDIII
TGSSTTECQSIISKLQAMFPVKDLGDIHYFLGIEVHRSAKGLFMHQSKYALDLLKKTDMLGAKPCATPVSTSKLDHSGTL
LSDPTSYRSTVGALQYLTWTRPDLAFAVNQVCQYMHSPRTIHLQAVKRILRYLKGTVDSGLWFTKGLICLTAWSDADWAG
CPVDRRSTSGYCVFLGPNLISWSAKKQATVARSSTEAEYRSLANTAAEITWVCKILQDISFPLLKTPIIYCDNKSAIALA
FNPVFHARTKHVEIDYHYIREKVLLGHIGVNMLLPFFKLQTFLPSLWLLIDLLLLLPSSQFDHLPSA
>Copia-77_Mad#LTR/Copia 1805-5791 via tfasty with POPCOP2, 1 stopcodon. [Malus x domestica]
MATKSSKSEVFKIERLNNVNYRIWKRRITYLLTHDKTLYTIKDERPLGPSRVYNKWVEDNELAKATILNYMEDKLIPLYE
EYDSAKEIMDVLEKKYGPKSQTYIQLLLEKYNGTKMEETDSMVDHITKMEVMAKDLANAGHPVSDKMQVSVLLGSLPNSW
ENVVTSMTYGQVELTMDTLPAMLAIEEVRKNYRKKETGQGRANLLIAEDSQKNKQHMHKPHSSNKRPNFKKFGHRKQNKF
KGKESACYNCGETGHYRYKCPKRRKNNKNPKELILTVSEALIAEDQGQWWIDSGATRHVCKDKSCFINFKEKALGEHRLY
MGNNTYVDVLGEGDCKINNSKSTIVLKNVLFAPNIRRNLVSVSVLEKKGFETRFMNGAVTIGKKGYIYVRGIRVDDMYSV
CINKSISSEYAFVSTVQNLSYLWHLRLGHINKNKMIRMSKNGMLPQVNAHDFDTCESCIKGKMTRKSFSQHWTSTNLLEI
VHTDLCGPMRTKTHRGMKYFVTFIDDYSRYGHVYFLQHKNEALDKFKEFKAEVENQLGRSIKTLNSDRGGEFEAFDDFCK
ENGIRHNYTMPYTPQQNGIAERRNRTLMDMMRSMMSYADLPLHFLGEALATAAYILNKVHTKAKPLTPYELWHGRKPDLS
NLKVWGCKAHVLIPKPLRNKLQAKTLECKFIGYPDNSIGYRFYHPEKGLIESRDATFIETTDLVNPIQELESLEEENSPT
DDQDFHLDLDLSHDHDIDNDQVGDVNMGDHNNVDHDTHMDDDHDIIMEDINSGRNDQISGSKRKREPSRRLKDHFVFNLE
EVDHSVGDPDPRNYKEAMDSFESEQWQQAMNEELDSIKKNEVWELVDLPNGRKPIGCKWVLRKKYKSDGTLDKFKARLVA
KGYTQKPGIDFVDTYSPVAKFTSIRILMAIVARMDLELHQLDVKTAFLNGDLKEDIYMIQPEGYHVKGHENKVYKLRKSL
YGLKQSSRQWYLKFHQAIMEMGYKINPLDHCVYSWKCQDNFCMLSLYVDDILLAGNSIDMIEKTKSYLGSKFEMKDMGEA
SYVLGIKITRDRDAKTLYLDQQNYLDKIFKRFNMQDCKPVSTPVCKGMMLSKNMCPVQKQDIIDMQNVPYAQAVGSLMYA
MTSTRPDICHAVGLVSRYQSNPGKQHWMAVKRIIRYLKGTQGMKLCFGLNDLDLVCYCDADFAGDLDDRKSTSGNIVLFG
GTAVSWLSKKQGCVAKSTMEAEYISCSTAVSTAVWAKRFIDNLNIGIPKEHVNVFCDNKSAIFLIKSGANSSKGKHIDVK
YHYVQDIVEKxEVEVDYIPSEEMVADPMTKGLSLEKFREHVTTMGLQNI
>Copia-69_PT#LTR/Copia 33-4237 via tfasty with Copia29-PTR, 78.6% SW:3824, 2 frameshifts and 6 stopcodons. [Populus trichocarpa]
MASSSLNTSNAATNGNPPLVSPPAINVTKLSKDNYHVWKAQLIPFFRGQGLFGYLDGTIPIPPKEVSMAETSSAISNPLY
EHWQRQDAIIVAILFSTISENVLIQVVSHTTSAAIWCALAKSFSSQSRARVIQLRTELVNTRKGAQLAHDFFMQVKRMID
ELAVADHALHCDEIISYLLSGLGHDYDSFVTTITARTYPITLEEVYALLLTTESCLQHHNSPIVQPTVHVATRQSSSSSY
KGRNSYRGRGQNYREVSFYNGSNGRNTFHRDTMICQVCDKPGHSAKKCYHRFNVTYRDNAAKSSNVQGLMATTSSVSVTD
WHPDTGATHHLTNNMANLNLQSEDYTGSDQVLVGNDAGLQISQIGSSILTPxKTPFVLKQLLIIPEIQKNLIFVQQFCSD
NLVFFEFHDRFFLIKDYSGKILHHGTFKDGLYSFSSLSDTLPPHALTAVRAFYQIWHNRLGYASFPVLQKSISTFTLPVA
NKRLPVCSDCQLARSSQLSFKTSNHKSINPLDIVHTDVWGPAPILSTSGARYYLCFLDDCTKFIWLFPLKLNVEKVFLLF
KTSVERQFNRTIKNIQFDWGGEYRRMSTLLTQIGIHHRRACPYTHQQMGAVERRHKQIVEVGLSLLSHSKLPQQFWEDAF
LTATYIINRLPTPILNKKSPYEIVYCYTPDYHFLKVFGCACxPYLRPYNKHKINFRSKNCIFIGYNLDHHGYKCLDLATS
KVYVSCHVIFDENHFPYKSPDHQPSICPDTPSIVVSFSNTISSLSLPPAGTCVTSPSPHIDSPLPASSPTPEPAPQSPAD
TTPASPPIPVPHPTDTIPAISNTHPMVTRSKNHISKPKRTPDGHSLYPLPRALQVFASPSCKEPTSFTEAFKSCHWxSAM
NFEFDALLRNQTWELVPPSPILNVIGCRWIFKTKTKADGSIERYKARLVAKGYHQQLGVDFHETYSLVVKPATIRLVxSI
AVCNNWTVRQLDVQNAFLHGNLSEVVYMDQPPGFKHPQFPDHLCKLKRSLYGLKQTPRQWFSRLAAVLIQFGFVGSKADL
SLFVHTDTSNIIYILIYVDDIIITGSNAVVVTDIIQRLHKEFAITDLGPLSFFLGIEAIRDATGLYLTQRRYIADLLTKS
KMDGAKPCSTPMSTTVALTTIDTEAFDDPTLYRSIIGSLHYLSFTRPDIAFVVHHVSKFMHQPKQSHxICVKRILRYLKH
SISYCLLLSCSSSFTFQAFFDADWAGDTDDRRFVGAYCVFLGSNLISxRSKQQATVARSNSEAEYKALADTAAALQWLQF
LAAELGLHLSQSPTLWCDNIGATYLSSNPVFHACTKHIKIDFHFVRDLVSKNKLTVNFLSSRDQLADLFTKPLFAARFNI
LCSNLNVRNLPFRLRGCVEDIIKSTEDNTDTEDKHDQGLLS
>Copia-69_Mad#LTR/Copia 90-4355  [Malus x domestica]
MAEELSETESSMDAPAFSDVEVNPNQRLSSVLLNEFNYLPWSRAVSLALGGRSKLGYVNGAIEAPVVTSSTYESWLCKDQ
LVMSWLLNSMERRIAEIFSYSESSMHLWKQVKEMYGNQNNAARVFQLKKDLASLQQGSKAFVQHLGSLTNMWNELDVYRP
HTTDATVLIKRAEEDKIFQLLASLGPEFEDLRSHVLMNAELPSFTGVCAIIQREEVRRKVMNQETKDSVSETRAYVSSNK
RPEGKVYKGKRPDLKCNYCDSLGHTKDRCWILHPELKPKFLKETKGPEIKGTQKYLNNNSYKANHAATLSTEGMVNFTTN
PAALINDFAAYLHSKQVLNDRDEAPVAEEKNHTALLGKFAGFLAKHDHVSQKDIPGIFSAFSTALNASNEHDYWIIDSGA
TDHMTNKINNLHDFTKMTNPSQVSVANGKGATVVGKGKINLLSKHIESAALYVPSFPFQLLSVGAITNSLNCLAIFSPHN
VVFQDIITKRTIGEGFLLNGLYYLAKDTKNPKFFQVSSSVSQDQQLWHQRLAHPSDKVMSFLFPKICKDKLKCDVCHLSK
FSRLPFDSSTSRASHPFEIIHSDIWGPILESFDGYKYFVTFVDDFTRMTWLYLLKFKSELSNVFQDFHKLVGTQFASKIH
ILRSDNGTEYMSHNMSQYLSIHGILHQTTCVGTPQQNGIAERKNRDLLEKTRSIMFHMNVPKKFWSQGVLTAAYLINRLP
SKVLSFKSPYEVLKDRQNDLSHLRVFGSTCFVHNQSLHRDKLDPRATKCVFFGYSSTQKGYKCYNPITKKIMVSRDVRFD
ENMPYFSKKLSDADQGEFLSDMFPLPSVPLYQESPISRNPPTLLHELPSSQTTDIEPQVPIRRNPSRVRQPPLRLHDYVT
YTSRYPLTNFVSYKQFSPSHTSFLSTLDNTHEPQTFQEANELEIWQKAMRDELQALHDNRTWSVVKLPEGKKSVGSRWVY
KTKFNSDGTIERHKARLVARGFTQTYGLDYKETFAPVAKMNTVRVLLSVAVNKSWPLYQMDVKNAFLHGELEEEVYMKLP
PGHPQSDDPDMVCKLHKSIYGLKQSPRAWYAKLSSILEEFGFQRSSADSSLFVRDGLVGKVIVLIYVDDLIVTGDNAEEI
HSLKLALQNKFAIKDLGRLKYFLGIELANSQEGLFLNQRKYILDLLKDSGLIDSKPARTPLDSKLQLSTHSEALSDITKY
QRLVGKLIYLTITRPDISYAVSIVSQFMHAPTLAHMRIVKRILRYLKGSIGRGLLMTKNDSTAIMGYTDADWAGNSLDRK
STTGFCTFVGGNLVTWRSKKQTVVARSSAEAEYRAMASTACELIWLKSLLSDLGFPSNEPMSMFCDNQAAMHIASNPVFH
ERTKHIEVDCHYVRAQVQSKIITTYYTRSHDQLADIFTKSLPTVPFLCILSKLGSRDPLDPA
>Copia-69_SB_pol#LTR/Copia 2685-5891 [Sorghum bicolor]
MQIGGLENTWLVDSGCSRHMTGSSKWFSSLDPVQCKEYITFGDNSKGKVLSRGTIRVNENFVLKDVALVSNLHFNLLSVS
QLLQDGFEVRFKTGLSRVLDSQGNLVCQIVPFGRVFRADFSYSFGSSRCLVAGSSSDLWKWHRRLGHLSFDLLARLSSLD
LIRGLPKLKFEKDLVCHPCRHGKMVAASHPPVTQVMTKGPGELLHMDTVGPARVRSEGGKWYVLVIVDDFSRYSWVFFME
GKDEAFSHVRDLILRLQTELPKNAMRAIRSDNGTEFKNTQFDTFCASLGLEHQFSSPYVPQQNGVVERKNRTLVEMARTM
LDEHRTPRRYWAEAINTACHVSNRIFLRAFLKKTSYELRFGRLPKVSHFRVFGCKCFILKQGNLDKFESRSSDGIFLGYA
SHSHAYRVLNLETNRVVETCEVTFDETMPCSSPVFECAGDQEIGESIFVEDDAEDADWGDPEPTPLAAPLASSTTTSADG
PDPSSSTTWGPFEQPPQPTPAIPEEAPAAVEGEATSSREAPRHIQRRHPPETMIGEIDQRVTRSRSYHISHFAHSAFVAS
FEPRDVGHALSNPDWVNAMHEELENFERNKVWVLVPLPPDCHPIGTKWVFKNKQSEDGVVVRNKARLVAQGFCQKEGIDY
EETFAPVARLEAIRILLAFAASKGFKLYQMDVKSAFLNGYIEEEVYVRQPPGFENPKFPDHVFKLHKALYGLKQAPRAWY
ERLKTFLLAKGFKMGSVDKTLFLLKQGTDTLLVQIYVDDIIFGGSSHALVGKFAETMSREFEMSMMGELTFFLGLQIKQT
REGTFVHQGKYTKDVLKKFDMGEAKPLSTPMSTTTALDADEEGEAVDQKEYRSMIGSLLYLTATRPDIQFAVCLCARFQS
SPRTSHRQAVKRILRYLRFTPEFGLWFSASSSLSLCGYSDADYAGCRVERKSTSGTCQFLGTSLVSWSSRKQSSVAQSTT
EAEYVAAAACCSQLLWMIATLRDFGLEFRRVPLLCDSTSAISVAKNPVLHSKTKHIDVRFHFLRDHYEKGDIDLHHVDTQ
NQLADIFTKPLDQAQFARLRGELGVCFPF
>Copia-70_MLP#LTR/Copia 40-4140 via tfasty with Copia-33_Mad, 60.0% SW:1426, 1 stopcodon. [Melampsora larici-populina]
MTSHQSANEASHITPLEQDWQRWSPLMLAHFMEGDLDGIVDGTEQEPDDDAAAALKLDYHRRRKKAAGFISRKLSPENRA
LVINTSNMKDPKAIWDALVKLYASTKARNRARILRKFLNLKCSDNSLASFLSEYRKITHEMTEVAFKIDDDILAHMLLYK
LSPRYHSTRDLLAHSAETGDTLLSLNLVFEHLQQIVLDYQPSTAPPPAALVAERRTPSYPRCLNGIHNPATAHSEERCYQ
VHPELKPIRNINKSTDRTSANATISGTVLTTYVFNATLTGKPVLDSGASQSMFSSRLCFTDYRPCQAAIHVANGQQINAI
GTGTVSGTHNGKLVSFTDCLHVPQLSTNLVSMVALVRKGCTFNFAPDSSFNVVVGSDVVLTGDTKSGVMEVNFDMGKSTS
LSLIASPQVNPVTLHRRLGHPGQIPLEKAFPGAILPDSCEPCILSKHHRLPFKNHLPIACDRLSVLFSDLSGVISPPSLG
GGRYYFKITDQKSNFKFVYILKTKCETFSYFVQFKAFVENQTNLKIKTLVNDNGGEYTSKQFSDFIKHEGIKMDFTAPYT
PQQNSISERGNRTTTEKARALLKQSHLPLVFWAEAVSTSVYLENLTPFARDNFITPFENWHGKAPSYAHLRVFGCLAYVH
VGKERRTSKFSDVAKKGVLLGYQGSMHNYRVYLLDDHRVVYSHDVVFNEDVFPFSDPAVLEAFNKKFGNSDNHFIEDINT
DFDFESPLIHSPIHPLTEDENLLISNSTAENPVSSSQSSNSLTQNERQSDRREDEPQPEESTPDEEPQIEEPRVEEEPQT
DSQNSGRPSYSFVPSTVPAPKAITSSIDASNIITTKRRAHLANTLTPEPHSYREAVTRPDSSSWKAAIEKELNNLIDMGV
FTEMELPEGAHALGTTWAFRLKTDENNAIIKHKARLCAQGFSQIPGLDYNETYAPTGRAASMRMALSICGIDDLEVRLMD
AVGAFLNGIPPEVLYIKIPQGYAPKLKGKNIVLLLNRSLYGLKQSPRCWYIMVKSFFLSIKFSPSKSDPCLFISDDPSWR
CFAHVHVDDMLVMGKNTARFSQLIQTRFKMEDLGDCSFYLGMRLERDRVARTITLTQDKYILGMLEEYGMQDCHPVTTPM
IPGTYLKPATDEEHQQFLDTGINYNRAVGLLNYLVLCTRPDLAFTSSQLAQHLKKPGPEHWAAFKRVLRYLQGTYQDGLV
LGGGTTELQVYADSDYAGCPTTHRSTSGYISKVGSGCVSWRSRKQPSVSTSSTEAEYRAAYEAAQETVFLRRILNDLGAP
QDGGTRFLCDNQSSLALQKNPLFKDRSKHFQVHLHWIREQVDANVIIPTYIPTKEMLADVCTKALPRPQHEYITKLIRSx
DVEIEGG
>Copia-69_ZM#LTR/Copia 499-4512 via tfasty with Copia-64_SB, 86.9% SW:5025, 1 stopcodon. Product of TOS17 very similar and fragmented. [Zea mays]
MSHTTAIIINITLDGQNYREWSFCVETALRGHGLAFHLIDDPPLLTANNSNASEIKTWTINDGKVMAAIVNSVKPSMIMS
LSSFKTAKAMWFYLQKRYVQDSGALLHTLMQKIHLIEQHDLSIDEYYSAFDRLMGPLMSMVPSCTADECTAHKFIEKFFT
YRFVMGLRTDFEAIRTRLLHGSASLTMTEALSDLLAEETRLSSMSIPHTPVSHNMLASSHKYGGKGGYFEPCKHCNKTTH
WSDQCFLKYPEKLAEFRSRRTNQGRGPSKGSVSVAALSGNASSSTWVLDSGASFHVTSDQSQLDTCATVTNGSSVQTADG
TSCSVTHKGSLCTSQFSIPDISFVPELSMNLLSVGQITDHNCFVGFDSSSCFVQDRRSGTVIGTGHRRRDSSRLYTLDSL
RLPPAYTASVSSVVSTSSFAQWHHRLGHLCGSRLSTLVQKGCLGHTNIESNFHCKGCKLGKQIQLPYLSSASYSTRPFQL
IHSDVWGPAPFPTKGGHKYYVIFIDDHSRYTWSFFMKHRSELYSIYQSFTRMIHTQFSSSIKIFRSDSGGEYLSDRFRRF
LTSEGTLAQLSCPGAHAQNGVAERKHRHIIETARTLLIASFVPSHFWGEAVSTAIYLINRQPSTKLANKCPGEVLFGTPP
SYDHLRVFGCTCYVLLAPRERTKLTAQSVECVFLGYSSEHKGYRCYDSSARRMRISRDVVFVENRPFFYNSSTSSSYSPL
QTTSLLSFPSNNDNVLSPHLPDPLLSISPPETSSPPALSDRLPITRVYTRRPTNPPPVPVPSPLVSPDTPVFDDTNNSDE
LQVAQRYNLRDRTTIAPPDRYRYPCSAVVIVEPTTYQEAAGIHEWQLAMIEELATLDRTGTWDIVPLPSHAVPITCKWVF
KVKTKSDGSVERYKARLVARGFQQSQGRDYDETFAPVAHMTTVRTMIAVAATRSWKIHQMDVKNAFLHGNLNEEVYMKPP
PGVEVPSGSVCRLRRALYGLKQAPRAWFECFASAIMAAGFSPSNHDPALFVHQSTQGRTLLLLYVDDMLITGDNEEHISS
VKKQLGKLFMMTDLGPLSYFLGIEVVHSTKGYYLSQHKYIQDLLARSGITDTRTAATPMDLHLQLRSSEGTPLADPSRYR
RIVGSLVYLTVTRPDIAHAVHILSQFVSTPTLVHYGHLLRVLRYLRGTSTRCLFYAQSSPLQLYAYSDATWASDVNDRCS
VTGYCIFLGSSLIAWKSKKQVAVSRSSNEAELRAIATTTAEIVxLRWLLADFGVVCDGSTPLLCDNTGAIQIANDPMKHD
LQKHIGVDAFFTRSHCRQKTITLQYVPSDLQVADFFTKAQTREHHRLHLLKLNVSDPP
>Copia-36_BG_gagpol#LTR/Copia 129-4577 57.6% sim to Copia-7_SMo, SW:1394, [Blumeria graminis]
MAFNQIIKSVRSLPTLDKSTYTRWASLFRMILVQFNAESVICDPSEAVADTKKKGENKDVDLDEIDRCVRFALLSAVPDD
SYHLVENKNTSREMWIALEDFFKPECEVTPTSLLKDFFRFTMPDGTSVDRFSEELTKRQRRIAAADPSFFPSDTHMRDYL
LDYFDYCCNGQFSGSVTSLRRDKSCTFSQAVNSLRSTEATIKSRQSGPSAAFLSTPAKLQSIPDPTSSSPSSYSPNKDKT
CAHCHRKGHTRDTCFLWISTPDGTKWAAKHPEKAAIVRAMFQKFGNKGSSKDKKGKSIKLDGAWMMEEHILTSDGSGKCN
DVVLDTGATHHIFHDKSLFSSISPVDKRVQTASGQLLSISGIGSVEISLGNYLDSSCSRTLKLENVWYLPSCTKNLVSGS
QILSAGYKMRSSNSGIGIFEAKGRLTATARLRNGLFHFNVISPPAVLSSSRPRFSSPLSTQPEDPTLPSNINQGLLTIVS
NMDANRLLHHRFAHVSPQILSKVDISLVKLPNLKSQELSKLNICPKSLGNCDVCLSCKQVEKINRGPCNKSDQTLQLVHS
DTWGKCRHVGISGSSFFVSFTDDFSRFSEIFLLKGLNEVPGHFSIYRDSIELLTGHKIKALRTDGGSEYKLINFGGITRQ
ISAPYTQHQNGVSERLNRTLVTMARCMLSHAHLPVRFWDAAISTACYIRNRLPLLEGKKTPFELLRGSKPTISHFRVWGC
VCYSLINEKDPQRSKLSPTSLRGIFIGYCESSTQYRIYVPSKAGRNKIIISANVRFLEDTFWDWGQTSSEQFGEIEGPLD
DNPTSSHSENSYDSSDSDSGVSPFPDPSFLPSSSRPLDPQATTDQENSFSGVNIPTATLEQNSSHVDPPTFRNTLSQDQI
LSRQTARHHSITEPDSSFSTSVQPDPSSSTPTPYSSAEISQGVNQIQTTPGSITSNIPPLRRSNRISKPIEPRSAWQPKS
PILYVGGDTSIPQSYSEAINGPDKAMWEMAIQEELDSLSQKGVFTSVTHVPHKRRAIGSRWVFTVKSDGRFKARLVAQGF
NQIPGVDYFDTYSPTLRLDSLRILLAISTYRDWEIHQIDIKTAYLEGDIQESIYMKSPQGWNVSGFLKINKALYGLKQSG
KAWYDKLDSKLLSLEFEKSTCDHCVYIHKIYQMVIGVYVDDLIICGKQLDDVKIVKAKLSSFFPVKDLGEIDSIIGWKIL
RERPTRTLHISQSSYLLDKINSLGLGDSKSFSSPLDGYGGILPQAEGEPLADDSAYASAVGSLGYASIGTRPDISFATSQ
LGAYNSSPVQRHWNSVCRVFRYIKGSSNYCITYSFGPPSHILTTNQAASLYSDSDYASDVTTRRSVSGFILMLGGGPVCW
QSRKQKSVSTSTTEAEYVALSEAAKQAIWFSRFLKELHVSELIHDDGILTFSDNQGALAIAKGTNSSKTKHIDVAYHFVR
ECILNGHIKVSYIPTTSMLADILTKPLPQQKAKPLIERIFQMG
>Copia-35_Pru#LTR/Copia 75-4061  [Prunus persica]
MASENSFVQPAIPRFDGHYDHWSMLMENFLRSKEYWNLVEIGITAAAGGSDSSEAQKKILDELKLKDLKAKNYLFQAIDR
SILETILKKDTAKDIWDSLKQKYQGTARVKRAQLQALRKEFEVLHMKNGETVNDYFGRTLTIANKMRTQGEKMDDVVIIE
KILRSMTSKFDYVVCSIEESNDLDILSIDELQSSLLVHEQRMSRHVVDEQALLVTYGVQQGGRGRGTYRGRGRGRGRQGF
DKSTLECYNCHELGHFQWECPRKPKEEKANYVETKEEMLLMALVESKEATMEHIWFLDSGCSNHMCGKKDMFCELDSSFK
EFVKLGNNSSLTVQGKGNVRMEVNGIIHVITGVFYVPDLQNNLLSIGQLQEKGLTVLIQHGRCKIFHSERGLIMETKMSH
NRMFAVLARCSPKEQKCFSSLTIDQAQLWHCRYGHLSWNGLKVLQQKQMVEGLPQFIASQRVCEDCLVGRQHRDPFPKES
LWRASKVLQLVHADICGPINPTSNSNKRYLITFIDDFSRKTWVYFLVEKSEAFGTFKFFKSRVEKETGAFIRSLRTDRGG
EFTSHEFTNFCHENGIHRQLTTAYSPQQNGVAERKNRTIMNMVRSMLSAKQIPKTFWPEAVNWTVHVLNRCPTLAVKNKT
PEEAWNGHKPSVDHFRIFGCIAHVHVPDTKRVKLDAKSCKCILLGVSEESKAYRLFDPVLQKVIISRDVVFEEDQQWSWN
DSHKEAIVADLEWDSDEENSTQREESDESGTDEVVGETESESDSGALIEENIQPAEISPRMERIRRPPIWMRDYVTGQDL
SDDESASMAHLALLINQDPTTFEDAVKSEKWRQAMDQEIQAIEKNNTWELMKLPPGGKTIGVKWVFKTKLNEKGEVDKYK
ARLVAKGYCQQYGIDYAEVFAPVARLDTIRIVISLAAQKNWVIYQLDVKSAFLHGEINEEVFVDQPPGYEQKGHETKVYR
LKKALYGLKQAPRAWYSRIESYFIKEGFNKCPYEHTLFIKTAEGGKILIVCLYVDDLIYTGNDAMFEQFKKSMMVEFDMT
DLGKMRYFLGIEVIQGSDGIFISQRKYAQEVLERFNMAQCNSVLNPVVPGFKLTKDEGGVEVDSTVYKQMVGSLMYLTST
RPDLMFIVSLISRYMERPTEAHLLAAKRAFRYVKGTIDLGIFYKKGGKDELIGYTDSDYAGDQDDRKSTSGYVFKLSSGA
VSWSSKKQPVVTLSTTEAEFIAAASSACQVVWLRRILKSLNQEQYSPTLVYCDNVSTIKLSRNPVMHGRSKHIDIRFHFL
RDLVKSEVLELVQCSTQEQIADVLTKPLKVDTFLKMRDLMGVCKFPGVN
>Copia-39_BD#LTR/Copia 141-4546 via tfasty with Copia-1_BD, 1 frameshift and 4 stopcodons. [Brachypodium distachyon]
TAAITAAPSLAVFAATTVAPATAAATHLTGALPADPAPTALFHFAHLITIKLTLDNYLFxRAQVLPLLRSHSLMGYVDGT
FPCLPVLLPAAVTGGLAIPNPAHRSWVQQDRVILSAIQSSLSEGVAGMVLFATTSHDAWTTLSSSFASQSTARSMQIRRH
LGELKKRDLPAAIFFNNVKTLADTLASIGQPLHDKEFTSYVLNGLDNDYDSLVEVVNGRDLPMPPRDLYVRLLSTEQRIE
ARRSADIYNASSSANAAYRGGNRASNRSNSGTPSSGGGKPILPTPPPQNGKLVLAPPRNTVTTNGRHVCQLCGIPGHLAS
RCYNRFKRHFLGIGNDGHNNERQAAMATQGQMPSYSFNAGWLDTGATDHLTGELDKLAVQEPYHGIDKVHTANAAGMHIS
HIGQASLPTTTSKSFQLRNILHVPSVTRNLLSVPKLSRDNNFSVEFHPCDFLVKDRVTKDTLLRGRYHRGLYKLDVPAVS
QVFSAVRVSPSRWHSRLGHPASPVIRHVLHRHALPIESTNKDVSVCDACQQGKSHQLPFSLSDRVVKAPLELVFSDVWGP
AQTFVSGHNYYVSFIDAYSRFTWLYLLKRKSDVFNVFLQFQTHVERLLNHKILHVQSDWGGEYLNLNTFFxKLGIIHRVS
CPHTHQQNGAAERKHHHIVEIGLTLLAHSSIPFRFWRDAFSTACFLINRLPTRVLDMKTPLERLLHETPDYNFLKIFGCA
CWPHLRPYNKHKLEFRSKKCVFLGYSSLHKGYKCLHVPSNRVYISRDVIFDESLFPFSQLPKSSSTNPPSHSSPITPDQF
LDVAYSPLLLPNHGAGIGCGARLQLLDDPDEPRVHGDARGHIDGHVGPVGEPARPVSPLPADGPSSPAGGPPSLGPCSAD
GPPSPALPSPASAAPVESPLPPAEPEQPDLPRAPSPPRRPHTCSRNGIVKPVERTDGTVSWLAAYMAEAVADPTSEPRYF
HAAMNIPHWRAAMEQEFQALQKNETWALVPPQSGFNVIDSKWVLKVKRHANGSIERYKARLVAKGFKQRYGLDYEDTFSP
VIKPATICLLLSMAVTRGWSLRQLDVQNAFLHGVLEEEVYMKQPPGFVDPARPHHLCQLIKSLYGLKQAPRAWHAKLASA
LRSHGFVPSMVDTSLFLLQRPDITMYLSVYVDDIILLSSSAAEADRLVLAHQGDFAVKDLGQLHFFLGIEVTHQASRLAL
PQKKYCLDLLRRAAMLKCKPSHTPMAATDRLSVDAGDPLSPDDATEYRSIVGGLQYLTITQPDLSFAVNRVCRYLHAPRD
SHWSAVKRILRYVCLTASYGLHLRSTSTDLLSAFSDADWAGSPDEHxSTGGYAVFLGTNLVAWSARKQSTVSxSSTEAEY
KAVANATAELIWIQSLLQELGVSSDRPPVLWCDNIGATYLSTNPVFHARMKHIEVDYHFVRERVAQKLLQIKFISSKDQL
VDIFTEPLSLPLFEGCRRNLNLRDTVRLD
>Copia-39_GM#LTR/Copia 116-4246 via tfasty with Copia-93_GM, 79.0% SW:3454, 4 stopcodons. [Glycine max]
MVETSKTSDQIHAKLPIFDGNNYERWTAQRKVVFRYQGVLDVIRSGVTPLDATPTETARATHREQLKKDDKAIYFLHQCV
DSNVLKKIIEYETAKEAWDVLATTYAGDKQTKKVKLMALRRQLGQLQMEPTETVAQFVNRLIVLTNQMKSFGEAVTDSMK
VEKVIMGLTPKFDNIVAAIEQSKDLDTLKLEQLIGSLEAHELKLKNRDDVKKDEKETEKALFTQSQKKESGGNESWKKKG
KGKWKSNKNEGGNSKQESQKKGGETDGKGKKKSKKHIQCYNCKKWGHFANECVNPKVPRKRNEVAQLARDSDEEVVALMA
TMDEELMVLMTVIEGGRVEWxYLDTGCSNHMTSHLEWFCEIDKTMRRNIRFGDGSCVIAEGIGKVAIRREDETKVVVSDV
LYVPQIKSNLLSLGQLLEKGYSMNMKGSYMEVFDSKEKVVLKVSMTSNRTFKVGVNSIDKKCLVAQVDDIVWKWHERMGH
LNFNSLKMLQKKNMVVGLPQIEEPKKICGKCCEGKQPRKSYKSAIPTRATKKLAIIHSNVCGPFEAKSIGGNSYFVSFID
DYTKKMWIYLIQKKSEVFSIFKQFKLLVEKQCDSSIKLLRTDDGGEYTSHEFEDFCKNEGIAHEVMAPYTPQHNGTTERR
NRTLLNMVRCMLREKNLPHKFWVEAVYTTTHILNRCPTKRLEGITPEEAWRGVKPSVKHFRMFGSLCYRHVPEQNRRKLD
SRAQAMILIGYHSTGAYKLYDPIHKKVVVSNDVIVDETREWNWKESTEQSTSKVTSIQLDSDRVEDEEEVNVPELTIPND
DNVNNANENNVENMDNDNMEQLRRSDRVRFPSVRLQGYALYPAGxCEDVTDIMHLVLMAESEPISLDQALSNPKWKEAMV
EELRSIEKNETWQMVNLPSNKRTIGVKWVYKTKMKPNGEIAKYKARLVAKGFLQQPGLDFNEIYAPVARIETVKLIVALA
SLRKWSLNQLDVKFAFLNWPLxEKVYVKQAPGFEKKGMENKVMKLKKALYGLKQAPRAWKKKIDASLQKLNFTKCSTEHG
VYVRLNINDDLIIICLYVDDLLVTWSNEQEIVKLKRQLMTEYEMTDLGKLSYFLGMEFVSREKGIFLYQKKYITDVLKRF
KMLECKPVSTPVDTTVKLQKNATDEGVDSTLFRQLIGSLRYVCHSRPNIVYSVGVASRYMKVPKRTHMVVAKRILRYLKD
TIDWGILFPSTEGPATTELVGYTNADWSGETKDRKNTSGYIFMMGKAPIAWCSKKQDVVALSSYEAEYIAATFGASQAxW
LQMLLHELKVKCESAMRLKVDNKSAIDLTKHLIVHGRGKHIEIKYHFLRDQVAKGKLAVEHCSTEDQLADMLTKGLKTSK
FEAMRSKIGMLSLASLN
>Copia-39_BG#LTR/Copia 333-4830 via tfasty with TTO1_NT, 57.0% SW:994, 2 frameshifts. [Blumeria graminis]
MNTESMIILGTGANFVEWETDLQTELVKRGRLGHVFHDIDGIPPAIRPTAPERISGITNEEFLSSQEEYNKRLKQWAEGE
IDAKGVMVRRMTAAIRPPNIRKITAKQLFDSIATSREEGACSPYEAAVRVFQQTKMTATADEYCNEFLRNLISVNNAAES
MFTANPRNSDIPNPYTVQPGLASIFFVLGTDDVPWLDTWRQTRTTTADSCYVPLNTMMATIRQVKERPAATGRAMVAADK
RPRTRDSIAVGDDEERCKLCKHRHLNKNCYKQHPELAPRKKGISNWKEAARISMAEEISDGDSDGDDQVVYLGRSSRALA
ASNANPLLYDTGASHHFIRRKSDFVSMKRLAVPFQFDQAVGSHTLSYKGTCKLRIGESYVTLTNCLYSPQSSCSIISAAR
LKSEHRIVAAQGNETLVKIGNSRQLTVARLLTINNVLYIDSSNEPPNQSYCERTAAPGVARIPQTTSAQRWHERLGHVGQ
KVLKHTAQNSLGLEELDLSKLSICETLSPKQSTGFISREPRPIPGKPLDEISVDTVGKLPTSITGYQYVVIITDAKTRMR
WALTTCTKDEIASCLVKWIELQQHQYGKLVRVIFRDGGSEFTRTKTFCDEHGIRTDVSAPYTPEQNGTAESSNKVILRIA
RSIMIDAHMPPMFWPWAVEHACFLSNRLCLPPHKKVPIVDFLQGLILPHNEKVDFKTLPRFGCRAYKLLEPKTGKFEARA
EKGWFFGFQKNTSKNYLIYHPRWSQAQGYKWIESFTPHATFNEDVMFGDAFDSIQQQKTASYWANETNLAANTWQSHTPP
RSIQPASGFEGELMNKPSSATRAPPVSKNEASTPLPNIPDIPQKAWSLNSADQDDLNATQIELSSHIRSDPREDTSPQAP
EDTEQQKSPREVQQPQEQGEPAVSEHTTITDQQTVTVSPKSDDQQQSVVVRPSAQETKLDKIMTGWDSIPQVAGHKRQHS
PEPTTSQTLIRHSQRGRPVKRPDYYKLHHGKTTRPSDEPKTWSEAMQGAEGNRWRQAAMDEIRSLKETGTIQIIRREKLP
KGRNIMKSKWVFKKKYFADGTLEKYKARCTVKGFTQRLGLDYNETFAPTPRAETGRIMLVLAHRFSWHRRQGDVPTAFLN
PDLDIDLYMEMPEGFGIEGRILLIRKGLYGLKQAAALWYDHAKATLAVSGLFPTTTDVCLYTNSQKDLFVILHVDDFQVM
GPDLSKIDKLMLALHKKYKLKTVKTDLFLGIQISTLDKGTLKLSQGQYTRKLLERHGLQECKTANTPLERLMESSDAQSS
KQQLTEYNSMIGGLQYLANNTRPDIAHAVNHLARFLTNPSEEHLQAARRVLRYVAKEPDRGIVFKAERKKPILEAYSDAD
FAGDTTTSRSTSGSLIRLASGPISWRSRLQREVVLSTTEAEYLAATETCRQLQWVKSLLAELDISELIEGSHRTNLYVDN
QSAISLIKNHDNHKRSKHIALRNNCCRQLYQQESIAVIYVNSKQQLADSLTKANSTVPIQ
>Copia-34_VV#LTR/Copia 564-4689 via tfasty with LCCopia1, 2 frameshifts and 3 stopcodons. [Vitis vinifera]
MDKNDIFLSRPINTVLEGNKNYLSWSQAMRSFLKGRMLWHYCTGVMTIPIKGASEGDAVFLNRMIEWDSHNHMILTWIRN
TSIPSISNLMGSFDDAKSAWDMLAKRYSTTHGSLKYQLVVDITSTQARTRATINDYYDQLRFIWDQIDLSDPTWTCSKDA
QQYASIRDEFRLYEFLMSLHKDFEPIRGQLLNRSPAPSLDTAVNELVREEARLATLQAxNKFNVLAITPSTPLIEQPQQS
GDSYGSSNRRKQTNKKFCNYCKRPGHTIETCYRRNKSTATVANIEPTPPMASTSVESKSSGSTINLSSTELQEIIAQAVH
MAGNASLSTALSVLPGKSQTWLFDSACCNHMTPHSSLFSKLDPAPHPLNIHIVNGSTMHGNSLGFVSTSNLSVPGVFHVP
DLSYNLCSVGQLAKLGYRLIFYYSGCIVQDPRTGQELGTGPRVGRMFPVSNLHLPPVAPVSIATAATAVSSLPSLALWHS
RLGHASSSRVQQLVSRGLLGSVSKDIFDCTSCQLGKxPALPFNNSESISNSIFELIHSDVWGPSPVASIGGSRYFVVFID
DYSRYSWIFPMKSRSEILSIYSNFAKMIETQFSKRIKTFRSDNALEYTQHAFQALLHSYGTVHHLTCPSTSQQNGRAERK
LRHILDTVRALLLSAKIPAPFWGEAALHAVHAINRIPSAVIHNQTPYERLFGSPPVYHHLHSFGSACFVLLQSHEHNKLE
PRSRLCCFLGYGETQKGYRCYDPVSHRLRVSRNVVFWEHRLFVELSHFRSSLTNSSVLEIFPDESLVPSTNTFDPPLDFS
PDIFDASPRQVADEQIDDEPTPLxDWVPAPTLPEDPPQDIPPRHSTRVRSIPPHLLDYHCYTALATLHEPQTYREASTDP
LWQISMKEELDALTKNHTWDLVPLLPRQSVVGCKWIYKIKTRSDGSVERYKARLVAKGFTxEYGIDYEETFAPVAHISSI
RALLAVAAARQWDLFQMDVKNAFLNGDLSEAVYMQPPSGLSVESNKVCHLRRALYGLKQAPRAWFAKFSSTIFRLGYTAS
PYDSTLFLRRTDKGTILLLLYVDDMIITGNDLSGIQELKDFLSQQFEMKDLGHLSYFLGLEITHSTDGLYITQAKYASDL
LSQAGLTDSKNVDTPVELNAHLTSSGGKPLSNPSLYRRLVGSLVYLTVTRPDISYAVHQVSQYLSAPRSTHYAVVLRILR
YLKGTIFHGLFYSTQSPLILRAFSDADWAGDLTDCRSTTGYCFLLGSSLISWRSKKQTFVARSSTEAEYRALADTTSELL
WLRWLLKDLSVSTSSATPLYCDNQSAIHIAHNDVFHERTKHIEIDCHFIRYHLVHGALKLFFISSKDQLADIFTKSLPTR
RTRDLIDNLKLVSHPP
>Copia-30_BD#LTR/Copia 63-4588 via tfasty with Copia-17_BD, 77.7% SW:4945, 2 frameshifts and 9 stopcodons. [Brachypodium distachyon]
MPTDAGTSGAAAGRNSAPATFLRLDRSDYIMWAMKMEVAMESQEIWDAVDPGGDTYAKGVANYRIDRLALAAIHAAVPND
VLQHLKGKKSVKDAWDMIKTLHQGHERIREANLQTLLKNYESLKMGEDEAVDAFAARVKTLVNGIRDLGETLTEIFVVRR
FLRAASPKYIQIVTSIEQCVDLKTLTVEDLVGRYKAHDERLRMVFGDGKDDEHLMMTHAQWSAMAARKTGDSSSSSGRRD
QAKGGGxAQAKKDPQGTEEKGAAPKKKFDRKKVRCHNCGIYGHFKSECRKPQKEKAFLAxSHxVIIYLILLLLWIFRGLI
SFFIARAGxxxILMSGSFGGWILKSSPIPITKKLDLNDPILRAKLAKGMGHNYYGEPAWPNDLLYIFMAREEDDDPALLM
VEMCELMEEGQEEVIEEKSEFVTLVEKKVYLHDKARVKAGNAWYLDTGASNHMTGDKTxFAELNLAVGGSVRFGDGSMVA
IQGRGTVLFETRFGDHKVLTDVYYIPKLKSNIISLGQLEERGCKIVLEDGYLWGYDRQRKLLMKVKRAKNCLYILDLDRT
EPICLLVGLDDPAWRWHARYGHLNFHSLRQLGQKDMVVGMPTMDHVERVCDGCLVGKQRRASFPREAKYRAEKVLDLFHG
DLCGPISPATPAGNRYFLLVVDDYSQYMWVVLLKTKDQAFQAFKKIKIAAEVEAEAKLKAFRTDRGGEFISHEFAAYCEE
HGIKRFLTAPxSPQQNGVVERRNQTVVAMARSMMKSKGLPGRFWEEAVPIAVYLLNRAPTKSVISMTPYEAWCGRKPSVD
HLRTFGCMAHVKNVSGHVGKLEENQxNLDDMFVVSYPVPEHAGHNHGEGHDHDAGGGDPPGTPQCRGATPVFSFSRAPAS
SSAAAGSAAGTAAGISTAAGSATETAAGRSASATTQETAEVSAAAGASEGNDAAAGRDAETSTTAATSQRASTMVRSSVQ
TRSRTRRPTPERIRPLSELYPSPKKMICKTKTVKMKRTTKQRCFLSTEEPTSFEEASEEESWRKAMEEEMGSIQDNKTWS
LVDLPAGHKPIGLKWVFKVKKDSNGNVVKHKARLVAKGYVQQQGVDFEEVFAPVARMESVRLLIALAAQESWKLHHMDVK
SAFLNGDLQEEVYVQQPPGFVEGGAEHKVLRLHKALYGLRQAPRAWNTKLDATLVSLGFEKSPLEHAMYKRGDGKERLLV
GVYVDDLLITGADEREIARFKKQMLDLFKMSDLSLLSYYLGIEVCQQGDSITLCQEAYARKILEKCGMEDCNATLAPMEA
RHKLSKHSEADPVDSTEYRSIVGSLRYLVNTRLDLAYSVGIVSRFMEMILRYIKGTLNYGCVYSKKKEEKTQLVGYSDSD
MAGDVDDRKSTSGMAFFLGGNIVSWMSQKQKVVALSSCEAEYIAAATAACQGVWLERLLANLLNREPEKFELKIDNKSTI
SLCKNPVFHDRSKHIDTRFHYIRGSVEEGKLDVDYISTDEQLADILTKSLGRVKFQEMRKKIGLDVIK
>Copia-28_BRa#LTR/Copia 73-4482 via tfasty with Copia-21_EPa, 85.9% SW:5163, 2 frameshifts. [Brassica rapa]
MADLQVVKKDERVSPYTLYGSDNPGTAITSVLLNGEHYNEWSSEMLNALQAKRKLGFITGTLEKPDAGSVDLENWLTVNS
MIVGWIRTSIESKVRSTVTYITDAHQLWEDLKQRFSVGNTVRVHQLKAKLASCRQEGQSVLDYFGKLSALWEELQVYQPV
HVCSCGAATAMAKERDQERIHQFVMGLDDSRFGSMCTNIIGLDPLPSLGEIYNKIIREEQRLAATRVRDQQQEAVGFVTR
QNSSTTSNDASSKPENTILRSRMLCSHCGRTGHEKRDCWQLVGYPEWYTERNAGRGQSSGSRGRGGRGSGGRGRGQVSNA
HATSSNTSSFAEFTPDQLRALSQILQTKANAASAPAPATDKLCGKKHFGEVILDTGASHHMTGDQSLLTEDEIIPPCSVA
FADSNRTLAVRMGSLRLSEKLVLHQVLYVPDLKCTLISVAKLLKQTNCLALFTDSICVIHDRFSRTLIGTGKERDGVYYL
TEVVSAKSHRASLSSDQVLWHRRLGHPSFTVLSDLVFISSKSAGSSHCDTCFRAKQTREILYDSMNKTTDCFSLIHLDVW
GPYRIPSSCGAVYFLTIVDDFSRAVWTFLLLEKSEVQTTLKRFIQYADKQFNKPVRMVCSDNGTEFMVVSSYFKDNGIVH
QTSCVGTPQQNGRVERKHRHILNVARSLMFQASLPIKFWGEAVLTAAHVINRTPTAIHHGRSPYEVLHGVKPDYNTLRVF
GSACYTHRMARDKDKFGQRSRLCVFVGYQFGKKGWKVYDIDRDEFIISRDVIFREDIFPYAEPKMTPSLRPNPVPTDDDW
VLVPSDDRGSNGVISPVTPPDATVSPTVPATESTESAQVTPSETVQSNDTSEPPTTTIPPSVPVQSEQPPATTTLPAEQV
APEPLGRGLREKTKTVALQDYHLYKVTVAPDGNTHFTPLPTTTSSDGSGTSLYPLSDYITDDQFSPGHRAFLVSITSETE
PKNFKEAMQLKVWRDSVGKEIVALEDNHTWDITDLPPGKEAIGCLWVFKIKFNADGTIERHKSRLVVNGKSQVEGEDYKE
TFAPVVKMTTVRSLLRLVAAKQWEVYQMDVSNAFLHGDLDEEVYMKLPPGFRHTHPNKVCKLRKSLYGLKQAPRCWFKKL
SDALLKFGFVQSREDHSLFSLSRKGIELRVLVYVDDLVICGNDAHMLQRFKEYLCRCFAMKVLGKLKYFLGIEISRGPEG
IFILQRKYSLDIVTDTGNLGSKPALTPLEQNHKLAESKGPLLADPKKYRRLMGRLIYLLNTRPDLCYSINILSQFMKAPR
EEHWQAALRVVRYLKGTPGQGIILKADPDIPLTIYCDADWGACPLSRRSLSAFVVMLGGSPISWKTKKQKTVSHSSAEAE
YRSMAAALREIKWVQRLLKDLGAEQTEPTRFFCDSKAAIHIASNPVFHERTKHIESDCHSVRDAVKDGTIVTQHIRTESQ
IADILTKALGRATFQNLVSKLGIVNPHSPT
>Copia-30_ST#LTR/Copia 298-4800 via tfasty with Copia-3_ST, 79.0% SW:4094, 2 frameshifts and 2 stopcodons. [Solanum tuberosum]
MPESGSMGENASATVTTTIDYHHPLFFSPSDAPGSLSIGIMLTGSDNYTLWSRAVKLALLGRNKLGFIDGSVKRAQFFGD
LAKLWDRCNAIVVSWLMSNVSKDLLSGVLFCSNSNLIWEDLRERFDKINSSRTFQLHKEIFTLVQGTSSVSVYYSRLKDL
WDEYDSIMPSPSCDCPKSREFIEHLQYQRVLQFLMGLNDSYSQARSQILMMPQVPSVNQVYAMVNQDESQRIVAGSSRME
ASNPTAMYTSRSGDDHSKQKRSFTGNLFCDFCHLRGHTKVDCNKLKKCDHCHLTGHVRGNCYRLIGYPDDFKGKMRANAV
TGSISGNVPMLDSNIAGSLDHHQMLMSSQQQNSFPQYQPMQMHTRHDYSQSQYMQPQPGMMASHMYTASASGNRDSHVTG
HGNISGSAHMACNFSHSQTSSVKWIIDTGASNHMIGDHTHLLDKGLIENVGQVHLSTGxSARVSHIGNYHLGEGDIQTNV
LCVPDFKFNLMSVSRMTKDLNCCATFYPHCCVIQELSSGMVRxIGKEEDGLYTMYSQAGNKEAGFNKCCSVSQEADATIW
HQRLCHVPMKVLKRIPMFQDLSKNSSFTLNNCEICPLARQTRMPFPHSLSRCTTSFQLLHVDVWGPYKWETYDGIRYFLT
IVDDHTRWTWVFFMRLKSDVLMLLKNFFVEINTQFGKKVQRLRSDNGGEFFSHACTKLFQDYGIVHESSCPYTPQKNGVV
ERRHKHILETARAIKFQNGLPNMFWGLCIESVVYVLNRIPLTVLNGKSPFQILYYKLPSFLHLRVIGCLCFATNLTQMDK
FSPRAVKVVLVGYSAHQKGYKLYDLETRSLFVSRDVVFMENSFPFQKTEVDTQHTTHFSYDDLIHHSHIPVNDLFSSPSE
VVPAAIGVEDIELEPPPEIVPDNVELEPPSLVVPDNVPARESRRSARGTKPLIWHKDYVLKASSNSFLYSIADNITYNGL
STKYQSFIAKFSTDTEPANYSEAASDDRLILAMKNEIQALEYNKTWEIVTLPQGKKAIGCRWVYKIKYKADGEVERFKAR
LVAKRYSQNEGLDYHEIFSSVVRMGTVRAVISVAATKGWKLYQMDVYNAFQQGDLYEEVYMNILEGFSRQKRTDGKVCRL
LKSLYGLKQASRQWNIKLTKALTLSGFHQSTKDYSLFTKMDGDKIVVVMVYVDDLLLTGNDHSMIQHTKETLHTAFKKDL
GELRYFLGIEFARSNEGILMTQRKYALELIADMGLAGAKTITTFMDQNQKLTTVEFDQHVSSNSEDLVLEVPTGYQKLIG
RLLYLTTTRSDIVFAVQSLSQFMHSPKMSHMKAAMRLVRYVKHAPGLGIMMSATGDDLLKVYCDADWGACVNSRRSITGY
LVHYGNSPISWKSKKQATVSRSSAEAEYRAMASLVAEVIWMTGLFKELGVNVKLPVTLFSDSKSTLQIAANPVFHEMTKH
IDIDCHFTREKIQEGLIVTAHLSSSEQPADLFTKGLGRASHTYLMSKLGMKNVFIAPSLRG
>Copia-34_BRa#LTR/Copia 750-5614 via tfasty with ATCopia27, 85.2% SW:5486, 1 frameshift and 1 stopcodon. [Brassica rapa]
MIDSTMVDYYCFEHHKCVRHIVAELAYILRPRESHCEPNTLYDNEIKMSKIANRDYAALNLSGDNYLQWALDTRISLKSK
GVGDTITEDNNENEKNRYGAIGLMRHHLIEGLKDQYMTIENPLDLWMALKNRYDHHRMVLLPKARHDWMHLRFLDYKSVD
DYNSALFKIVSILKLCGEEVTDSMMLEKTYTTFNHSNSVLQEQYRTKGFATYTDLISCLLLAEANNELLLKSNGVRPAGT
APPPEAHEVEKKDPNETYFVQDNKKPYGNSRGGFKRRGRDNSNGRDGYSTGRKGNHNNRGRGSNYGRGRGSYGRGRGGIS
KPSYKSKKSLYHRCGSDNHWAKNCRTPKHLCDLYQESTKNKNPEANMIQENVQEDKEGYGYDADNESDKDNQDDLMDFET
SDCLKDYVFESHCLIALCFxFGVFILCNGILIRRVFKHLMKSLKFRNFIYRMNDEMSILVVDSGTSHTILRDKRYFINLI
MQNAKVHTIAGEASLIEGHGQAYVMMPNGTHLEIKTALYSPSSRRSLLSFKDIRLNGFHLETWEEGNNEFLNIISITKGN
KKILESIPAMRTGLYYTRISMIEANASELFTLWHNRLGHPGTSMMRKLIMNSQGHMIKGVIPYKNLTCAACAQGKLITRP
SPAKVNKETLNFLERIQGDICGPIHPPCGTFRYFMVLIDASTRWSHVCLLSTRNLAFARLLAQIIRLRAHFPDFPLKTIR
LDNAGEFTSQAFNEYCMSMGVRIEHSVAHVHTQNGLAESFIKRIQLIARPLLMKSQLPVSAWGHAVLHAAELIRIRPSSE
HIYSPSQLLTGHEPDVSHIKTFGCAVYIPIAPPQRTKMGPQRRMGIYVGYDSPSIIKYLEPTTGDLFKARYEDSQFDEST
YPSLGGDNSRLISKDLEWFTPSTSWQDPRTRDCDLEVQKIIHLQELANKLPEAFTDPNRMTLSHNPACNAPIRLNVQDGQ
CQVATESKQRLKRGRPIGSKDKQPRKSKRGAGSESIKETVQDIGGPVEPTRTAEPCVPATPDDPAVPQSEVRDAGLHGTE
GPDNQEISINHVMSRKQWNRKDINVDDLFAYKVALEIMDKDEDLEPTSIQECMLRSDWIKWKEAINVELESLRKRGVFGP
ITLTPRDVKPVGYKWVFVRKRNEKGEVVRYKARLVAQGFSQRPGIDYEETYSPVVDATTLRYLISLAVKENIDLRLMDVV
TAYLYGPLDNEIHMKVPEGIELKDKKGSREQHCIKLNKALYGLKQSGRMWYNRLSEYLVKEGYKNDPISPCIFIKKFDSK
GYVIMSVYVDDLNIIGTSGEISQTVECLKKEFEMKDLGKTKFCLGLQFEYKENGILVHQETYTEKILKQFNMDQAHPLSS
PMVVRSLDLEKDPFGPKKPDEEALGPEVPYLSAIGALMYLASHTRPDISFAVSLLSRFGSCPTLRHWNGVKHLFRYLQGT
KDLGLFYTNRPGESMVGYADAGYLSDPHQARSQTGYVFIHSGAVICWRSTKQSLVATSSNHAEIIAMYEASRELVWSRNM
TGHVLKESGLAVGQEKEEPMIIYEDNAACIAQLKEGYIKGDRTKHILPKFFFTHDLQKTKEVQVVQVRSSDNSADLFTKS
LPTSTFRKLVHQIGMRRLKDLQ
>Copia-33_Mad#LTR/Copia 33-4003 via tfasty with Copia-16_Mad, 1 frameshift. [Malus x domestica]
MDVNTSRMVSLNGRNYIIWKSKMEDLLYCKDMFGPIEGDKPEKMSDEEWKKQNRRTIGVIRQWLDDSVYHHVSKETNALS
LWKKLESLYERKTAGNKVFWMKKLVNLKYSKKGTSVNEHLNEMQNIVNQLSSMNMVLDDELQALLLLSSLPDSWETLAIS
VNNSASDGVLSMNQVTASLLNEETRRKSTESSYSEALVVEKRGRNKNRSAYPQSHGRSRSKSRPRKDVVCHYCGLKGHYR
RECRKLKKEKKNEEKHEEKDTAAISSDGDIIVLSECEKSCLNMSYEDTTWTVDSGASFHATSNKAFFSSYKAGDFGIVKM
GNKDTSKIAGIGEVILETDRGSKLMLMEVRHVPDLRLNLISVGKLDDAGYKNKFSNGRWKLKKGSLVIARGRKCCTLYRT
HAQLWKGELNAMEKDASINLWHKQLSHMSEKGLQILAKKEILPEIKGTHINSCIHCLIGKQHRVSFQRNHERKSNILDMV
YSDVCGPLKVKSLGGASYFVTFIDDHSRKVWAYALKTKDQVLSTFKTFHAMVERETGVKLKCIRTDNGGEYLGPFDEYCK
MHGIRHEQSVPRTPQHNGVAERMNRTIVEKIRCLLSHAKLPKTFWGEAMRTSCYLINLSPSSPLNGDVPEKVWSKKGVSY
GHLKTFGCKASVHIPKEERSKLDDKAKQCVFLGYGDEKFGYRLWDPVSKKVVRSRDVVFFEDQTIEDFEKNAKCDQPYFD
SLIDFDPISHVVAHDVEGGAEPDKDLDGQENVPADSNAEEIQEEQPTREQDMELRRSNRQRVPSVKYSPHEYVLLTDSGE
PECFQEVQYDVHKEEWLKAMQEEMNSLHKNHTYDLVERPKGKKVLPNKWVFKLKETENSKPRYKARLVVKGYAQKKGIDF
DEIFSPVVKMTSIRVVLGLAASMNLEIEQLDVKTAFLHGDLHEDIYMEQPEGFKIKGKEHMVCKLKKSLYGLKQAPRQWY
KKFESFMVDNGFKKTASDHCVFIQKSSSKDFIILLLYVDDMLIVGPEADKIDKLKKKLSKSFDMKDLGPAKQILGMQISR
DRKEGKLWLSQERYIEKVLERFNMDKAKSVSCPFAAHFKLSNSQCPSTKEEMEEMKKIPYASAVGSLMYAMVCTRPDLAY
AVGVVSRFLANPGKEHWAAVKWILRYLRGTAKLCLCFGNNKPVLEGFTDADLAGDRDTKRSTSGYLFTFAGGAVSWQSKL
QKCVALSTTEAEYIAITECCKEMLWLKRYFKELGLHQKTFVIYCDNQSAIHLSKNPSFHYKSKHIDIRYHWIRDVLGKKL
LQLDKVHTNDNKSDMLTKALPKGKHEQCTTSGGLRFFDTSREGG
>Copia-39_Pru#LTR/Copia 140-4206  [Prunus persica]
MAGSGGGELRAPIFNGENYEFWSIRMKTIFKSHGIWELVERGIEGSDSKGADESDTKQKEKEESSGSGKMAIAEILMKDA
KALGLIQGAVSEVIFPRISHEESSHGAWNILKQEFHGDKQVRSVKLQGLRREFEYTRMREDESLSAYLTKLFDLINQMRG
YGEELSRERIVQKMLISLLPGYDPICSVIEHSRDLDVIEVQEVVASLKSFAQSLERHHENKTEKAFASLSTDTKSAKATG
NQNSKQQKTWKDKGKKWDNKPTDGTKTPCKHCGKLHYGECRFKGKPKCYNCDKLGHIAKDCYSKKPEQQQQLQFATQVTS
SPTMFYANNATEKRSMEEVWYLDSGCSNHMTGREDVLIDIDRNVTAKVAMGTGQLVDVIGKGSLMVQTKMGRKYIKEVLL
VSGLKENLLSVGQMMEHGYFLIFGDNKAEVYDDSSLSNLVARVDMKGNRSFPLKLQTDLHIALTASINQSTLLWHRRMGH
LNLQSLKLLQNEDMVFGLPEIKNTNAVCEGCTFGKHCRKAFPKEATSRATSPLELVHTDVCGPMQTVTKAGNRYFLTFID
DCTRMCWIYFLRCKSEVFTVFKRFRATVELQSGYKVKKLRSDRGGEYTSNEFNKFCDEMGMERQLTVAYSPQQNGVAERK
NRTIVEMAKCMMIEKGMPLEFWAETVNTAVYILNRSPTKALDKKTPFEAYSGRKPGLKHLRVFGSLCYAHVPNPQRQKLD
SASNRCVFLGYGSCEKGYRLYNIATEKVIISRDVVFNEEASWDWNAQQECSVSVPLTDAVSEKEKGSYDTVVKQAEHSIE
NELLTEDNEERSVVDTGTQDIDHTPLRYKSLTEIYESCNICIIEPESFEEAVKDAAWQKAMEAELEMIEKNETWDLVKRP
SDKPIVGVKWIFKVKLNLDGSVQKNKARLVAKGYTQKPGIDFNETFAPVARLDTVRTLIALAAQKRWKLFQLDVKSAFLN
GVLQEEVYVDQPPGFVVQGKEDRVYRLKKALYGLKQAPRAWYEEINSYFAAAGFQKSPSEATLYVKAAESGILIVSLYVD
DIIYTGSSEELVMSFKTEMMKRYEMTDLGLLHHFLGLGVIQAESYIFLHQKKYARTLLDKFGLKDCKAVSTPLAMNEKLS
KEDGSEQADEKLYRQIVGSLLYLTATRPDIMFAASLLARYMHGPTKKHMGTAKRVLRYIQGTLDYGIAYEKGKEAMLVGY
CDSDWSGCEDDMRSTSGYAFHLGSGVFSWASVKQSSVALSTAEAEYVSAAEATAQAVWLRFVLSDFGEEQVEATTILCDN
TSAIAITKNPVHHHRTRHISRRFHFIRDALQNGEIDLLYCKTDEQNADIFTKALARNRFEYLRSKLGIISAKHLEG
>Copia-49_SB#LTR/Copia 106-4346 via tfasty with Copia-29_SB, 1 frameshift. [Sorghum bicolor]
MTGSDGGAKEGTSYNSSVKEGTLLWPMLTRTNYSEWAMLMQCNYEALEIWEVIDPGTNPKRSQDRQAMSALLRSVPKEMW
TTLGRKKTVKEAWEAVKTMRIGADRVKDVNAQKLLQEFENISFKDGETVDDFGMRINNLVANLKTLGETVEETRVVKKFL
RVVPTKFTQVVVSIEMFCDMKVMTVEELVGRLRAAEDRMEEKVDQIVDKTGRLLMAEEDWLAKNRHRFQSNSSSSSGVGG
GHGKGKTSFKPEGGSGSGGNGTVKLTSEGTPRRKGRCHNCGIYGHWAQDCKRPKKERKERKEEKKEAANVAVADAEHSVL
LMATTCDVVRLSKTVHLAEDKFVPIDCVEGVWVLDTCASNHMTGTRAAFSRLDGSVTGTVRFGDGSCVAIEGLSSIVLEG
RDHQHKVLTNVYYIPKLKSNIISLGQLEETGCDVRLWNGRLTVVDPEGTLVMSAPRTRNRLYTLKPAVVSPVCLHMNMDD
ESWKWHSRFGHLNFRALRELGRKNMVEGMPIVDRVEQVCDGCTLGKQHRKPFPQSSSFRAAQSLELVHTDLCGQINPPTP
GGKSYFLLVVDDHSRYMWVELLKTKDEALLHLKKFKQQAELELGKKLKALRTDRGGEFNSRVFTVFCDETGIKHTTTPYT
PQQNGVVERRNQTVIEMARCMMKSKGVPPRFWGEAVKTAVYILNRAPTKCLQDKTPYEVWHGRKPRVDHMRTFGCVVHVK
VAGPGVTKLSDRSTKMVFLGYELGTKGYRAFDPISQRVVVSRDVVFEEKLSWDWGSQGVDGQTEPETFSVEFQTTVVDPT
IQVPAVSGDTNDDTRSQTGQGGPGSPQASTPAGSRIPTAPPTPVTPGAQSVAGLVGSGPQSAPAAIGSGSEQGPVRYRTL
ADLFDNTEELVDYEYSGLCFLASEEPASVEEAMKQQCWKDAMDAELKSITDNNTWTMAELPKGQQAIGLKWVFKVKKDPA
GNVVKHKARLVAKGYAQKQGIDYDEVFAPVARIETVRVLLALAASGGWEVHHMDVKSAFLNGDLLEEVYVHQPPGFIDPK
EAGKVLFLNKALYGLKQAPRAWNSKLDQELCNLGFRKCEEEHAVYRRSEGSSFLLVGVYVDDLIICGPDSSMIATFKQQM
MSLFSMSDLGLLSYYLGIEVVQGSGEITISQSAYAKKIVEQCGMTGCNPTDTPMEERTKLVTGTAEKVLDASRYRSVIGS
LRYLVNTRPDIGFAVGMASRFMESPNQEHWAAVKRIVRYVAGTINYGCRYTSGGTAGLKLLGYTDSDHGGDLVLRRSTTG
MVFFLGSNLVTWTSQKQKSVALSSCEAEYMAAAAGACQGVWLSRLVAELMGCDVQKFSLLIDNKAAIELSKNPVFHERSK
HIDTRYHYIRECVSNVWVDVDHVRTDNQIADILTKALGRIRFVELRQKLGIVKT
>Copia-49_Mad#LTR/Copia 49-4372 via tfasty with Copia-69_Mad, 2 frameshifts and 1 stopcodon. [Malus x domestica]
MTEESSVNHDEETRHNLSLNFSDVEVNTNQRLCSVLLNEFNYLPWSRAVSLALGGKGKLGFVNGSVEAPDSSSSTYNAWL
CKDQLVMSLLLNTMEKHVAEIFSYSNSAHDLWKALQDMYGNQNNYARVFQLKKDIASAQQEGKAFVQHLGSLKAMWNELD
VYLPHTTDPTILLKRAEEDKIYQLLGSLSSEYEDLRSHILMSQDLPTFNNVCATIQREEARKKVMNVDHNPRLTETRAYA
SKYKNSEAKVYKGRNTHLKCKYCNGVGHEEDKCWELHPELKPKFSKDGRMIPRSSQQFQPHFKAQLANAHAPTISQGSME
FTANPLSLINEFAAYLQSKGHGGGSHGQGNEEGSHTAMLGQFAGFLAGNEKVPKGEASGILKAFTTALLTSTEIDCWIID
SGATDHMTNKVTNLHHFKKISSPSHVSVANGKNVLVLGKGEINLLSQKTPSTALYVPTFPFQLLSIGKITNTLNCRAIFS
PNKVMFQDVLTMKMIGEGVFINGLYYLCKNACFTQALQAQSKSIDENQLWHRRLAHPSELVLSKLFPNFCNPYPTCDTCQ
FSKFTRLPLGNSMSRTSKPFEMIHTDVWGPATESMEGFKYFVLFVDDFSRTSFLYLMKSKSEVPTIFKDFHMHVKTQFQS
NIKVLRSDNGTEFLSNNMLQYISSQGIIHQTSCVGTPQQNGVAERKNRDLLEKTRALMIHMHVPKKFWSFAILTATYLIN
RLPSRVLGFKSPYEVLKGRKIDLTHLKVFGCVCFVHIQTLNRDKLDARATKCVFMGYSTTQKGYKxFNPVTKKCTVSRDV
KFEEDYPYFTSQGEDLVDMFPLPQNFNYPMLEKRSVIVSPDCEEVQTDQITASESEDEPYSDPSPPSTESQVIKRKPPRI
RKPPARLQDYVTYASRHPINECISFSKFSTSHATFLSEIDKHYEPRSFQEASLLPQWNQAMKEEIRALEENCTWSLVQLP
PGKKAVGSRWIYKTKFKADGSIERHKARLVARGFTQTFGVDYKETFAPVAKMNSVRVLLSVAINCGWSLYQMDVKNAFLH
GELQEEVYMQPPPGYDGIKGNMVCKLHKAIYGLKQSPRAWYAKLSSVLEKAGFMRSNADSSLFVRTGTRGKLVVLVYVND
LIITGDNTVEIEALKLSLHQAFAIKDLGRLKYFLGIEMATSSKGLFLHQRKYVLDLLQDSKMLDCKPAITPVDCKLKLSI
DGEAMHDVSYYQRLVGKLIYLTITRPDITYAVSLASQFMHSPTVDHLNLVKRILRYLKGSIGQGITMHNNQSTVISGYTD
ADWAGNAIDRKSITGYCTFVGGNLVTWKSKKQQVIARSSAEAEYRAMAATACELIWLKGLLSDLGFPSSTPMMLMCDNQA
AMHIAANPVFHERTKHIEVDCHFIRAQVQTQIIRTMFTRSHDQLADLFTKALASSQFHRLLGKLGSVNPLDPA
>Copia-51_BRa#LTR/Copia 46-4455  [Brassica rapa]
MSKDVATVAGGGHEINNKMFSPYFLATSDNPGTSISPVQLTGENYAEWSSELENALRAKRKTGFIDGSLVMPDEKVNPTE
AEMWKTVNSMIVGWIRASISPTVRSTVTFTTDAYKMWNDLKRRFSEGNAVRVHQLKAELAACKQNGASVMEYFGRLTLRW
EELLSYKPLHACTCGASEKIAQDYEEEKVHAFLMGLDEARFGNVCTNIIGLEPLPDLNSVYQRVVREERRLLSSRVESRQ
EAVSFVAKAESTVETAVMNGLVATTARGRGGAVVCSHCGRSGHEKKDCWQIIGFPEWWTERSRDGDRGGRGKGRGRGRNQ
PRAHAAQGSGGGVSPLTSEQWASLTALLEQQKPHSIPDKLNGKKQTGEVILDTGASHHMTGDEKLLTDLKPVVSCPVSFA
DGSQVFASMSGSLRLSETITLSHVLFVPNLNCTLLSVAKLLKQVGCFAIFTDTLCILQDRFTRTLIGAGEERDGVYVYRD
ITIARGHRVKAAEDKTLWHRRLGHPSFGVLGNLPFVSGVLNSSDKFGGCEICFKSKQTRGVFAESINKASVPFELIHVDL
WGPYREPSSCGAVYFLTIVDDFSRAVWIHLLLEKSEVKTVLPNFCKLVHRQFGRLVQKVRSDNGTEFMCLSKYFVENGII
HQTSCVATPQQNGRVERKHRHILNVSRSLLFQADLPVKFWGESVLAAAHVINRTPSSLLDGKSPYECLYGKPPSYTDIKV
FGCLCFAHKMLRDKDKFKERSRRCIFVGYPFGKRGWKCYDLETHEVFVSRDVVFSEATFPYSVENMIVLPDHTSTPVAVE
ADLGDYETARAVMDCRGSQSQEAAREVPASEERGARVAAPVVTGVSETTNVEVVSSESVPTEEPEPVVEAASAPEPVQEL
GRGHRVPQASVKLKDYICYNSQCLPDKHKPVSPSPPPLQSASSTNGPGINTSHPISAYVSDAVFSEKHQVFLAAITAGIE
PRSFKEAMRDPHFREAMSSEVDALERERTWDVVDLPKGKKALSNQWIHKIKYNADGTVERYKSRLVVCGNKQTEGVDYDE
TFAPVAKLTTVRTLLEVGVALNWEIHQMDVHNAFLHGDLKEEVYMKLPQGFQTDDPSKVCRLRKSLYGLKQAPRCWFAKL
TSALKTFGFKQSYADYSLFTYIKDGKSLRVLVYVDDLVIAGNDLVMLEKFKVYLSQCFKMKDLGKLKYFLGIEIARGPQG
MFLSQRKYALDIIAEAGLLGCKPVTTPMEQNHKLLSDKGPLYKDPARFRRYVGRLVYLAITRPELCYSIHVLSQVMHQPR
EVHWDAVVRILKYLKGCPGQGVMLKAVSDLRVRTFCDSDWASCPNTRRSLSAFIVLLGDSPISWKTKKQDTVSHSSAEAE
YRSMAAALREMKWLKRLLADMGIRHNMPMELFCDSKAALYIAANPVFHERTKHIEADCHSVRDAVQDRLIVTRYVRTTEQ
LADIMTKALGSAAFHYLLSKLGVRNLHSPT
>Copia-52_BRa#LTR/Copia 89-4537  [Brassica rapa]
MADNPALASQGAIIEAARTSPYYLHPSDNPGALITSVLLKGDNYTEWATELSNSIQAKQKLGFINGTIAKPTTEPDLTRW
LATNSMLVGWIRTSIDPKIRSTVTFVPEAHKLWENLQRRFSVKNGVRIHQVRDSINTCQQNGQSVIEYYGRLTKLWEELD
NLTTTRACTCEAATDIEKERDEIRVHKFLFGLDESRFRNIRSQIIDEDPLPDINKVYSRVIREEQHNNSRSAETKTEAIG
FSVQTDLTSSSSSKPDPLQAAVVRSRDPNRVCTHCSRTGHEKSECFLLHGFPEWWNEQPRNNSGGGSHAQRGRGGRFSNN
RGRGGRSNPARATTNNATSSTINNDQINQIIQLLQSSRSNISSERLAGKTKFSDIIIDTGASHHMTGNLSLLSDVSDVLP
SSVKFPDGRFSQALKKGTLVLSRDYSLKDVLYVPDFTCTLISVSCLLKQTGCIAIFTDTLCVLQDRFTKTLIGTGEEREG
VYYFTGVVAASVHKSAYKNSSTSELWHRRLGHPSYRVLSFLPILDKLSFDSHQTASCEICFRAKQTRSVFHDSSNKASDI
FSLIHCDVWGPYRTPSSSGAKYFLTIVDDYSRAVWTYLMLEKSEVSTLLQEFFAMCEKQFGKSVKKIRTDNGSEFMVLSS
FFRKIGVEHQTSCVDTPQQNGRVERKHRHLLNVARACLFQAQLPSTFWGESILTASHLINYTPSQVLDGRTPYELLFGKK
PDLDQLRVFGCLCYAHRKSRDRDKFADRSRRCIFVGYPFGKKAWRLYDLDSQEFFSSRDVAFSESKFPGVETEEYVTPPT
NSYDPAIDDWLLPATASRGSTSFPMPATTPPVTEPTSTNPIPSTQSEPIMSSSPELPSAPTAISIPDNTAPPSPTPQEPC
ISPPPEPSSPGIPEILGRGQRVKTPSVLLKNYVTHSAHVDNKPSLSLPTTDQCLLRTSSGITPYPISSYLSDHVFSDGHR
AFMAAIVTSAVPRSYKEAAQHKAWRDAIFKEVNAFEDTDTWDVTDLPPGRTALGNMWLFSDKYDADGNHLLHKARLVVLG
NNQIEGDDFNETFAPVAKLTTVRFILKVAAVKNWLVHQMDVSNAFLHGDLDEEIYMKLPQGYKSADPNKVCRLKKSLYGL
RQAPRCWYAKLTNALLRFGFSHDYADQSLFSKVRGSICLHILVYVDDFIIACNDTQALQDFKDYLHKCFRMKDLGKLKYF
LGLEVARSNSGFYLSQRKYALDIIAETGLLASKPSPVPMELNHKLAKAEGPLANAQQYRRLVGRLIYLTNTRPDLAYSVH
ILAQFMQKPLLPHWDAAIRVVRYLKGSPGQGIFFKADDQLRISAFCDADWSGCPLSRRSLSAYIVFLGDSPVSWRTKKQD
AVALSSAEAEYRAMSDTVKELKWMKGLFLSFGLSHPDPMRLFCDSKSALYIASNPVFHERTKHIERNCHHVRDALKAKLI
ATEHVSSRNQLADILTKSLPRPLFEEFCPSWLFAISHFQLEGE
>Copia-51_PIT#LTR/Copia 5-4374 via tfasty with Copia-12_PR, 69.0% SW:2565, 3 frameshifts and 2 stopcodons. [Phytophthora infestans]
MSPKTLGPNDILQEDNYFLWEFNARMTLAHKDLLDHVLVAKPEQAMARETDLADLKALAVLSKLLSPHYQTMIREATSAL
EAWETLRDFFVRQNLQNRVQLRRQLHDFRMSTGDNLMEHLLRFDDLCLRLSAAGDKIDEDEKLVVLLGSLSAEYDSMVKI
IESKGSISLLEAKEMLRREYESLQRREKQESAFRAGTSGTKGQQRxRRDDRRASGGRGSQDRQNSRHGGRNSQSGTKQRS
DHGFKGRCFECDEIGHRRTDCPKLKKYDDDNEVVFSASATSWRSEWLLNSGASSHMTNTMAEFCEYRGLNRNLNITIASG
QSLPAQGVGAVRYRVNGRLIKITDVLYVPGLDRKLLSIPALAAKNVEVSFSASGCTIRFGGETLALVPKIGKLYAWNVQV
QHAAGYEGTATAMMARPTDAALWHTRLGHVAQQRLDAIWKAVEGVPALPQDNRGLCDGCAQGKMTVSPFARQSSSRVKTR
APLEVIHSDVMGPMQTRTKWRARFVVTFVDDFSRYVHVYLLKSKAEVLKHFVRFNQLAETQLQRRVKCIPTDNGGEYTSK
QFTSFCFNQGIVHQTTAPYSPQQNGLAERMNRTIVEMARSMLHHMQLETCWWGEAVVTATYIINRIPNSARPASTPFENW
FGVKPWLDHLRVFGAQGYVHIDQSKRSKWDRKAHRCIFLGYTDASKTYRVWDLEDERLVVTRTLVLDERPPSEYRSHRCS
TEAPNMVNYNWDECSHSPISPPIPRDSDDPADMEIDCDGTPAEPMQVDSGDKNRAWTLSGPSQVSVRPVLATHRSVAVxG
GGGNDMMMPPDQPLLGNRSNLGCLVQRQSNSAASFHHPRSPGKQLVVRNHPRNLTTERQQLLTSGSSSQEALLLPGPNGG
PRHDDRDDSYLAPGLRELVNSDVQELPALPPPTDPEDESDEPDPKRPRLGSYEIALAAAEGVPTSYAEAIRSPDADKWRE
AVRAEIRSHVRNHTWDLVRRPHGAKVIGCKCVFALKRDEHGNIVRYKARLVALGFLQTYGIDYRETYSPVASLNTVRVFL
AVCCSKNYVVKQYDIETAFLNGDLEEEVYMAVPSGIKTSDGMVCRLRRSLYGLKQAAAVWYKKIREVFLRMGFQQCGADV
CLFVKESGEDGPVFIVLYVDDLLIGCKNDEIAEEVTKKLAEHCTVKTLGDARFILGIQVQYDRDNGTLLLSQEQFIQRMI
TKFGQHEAYPMRNPCIPGQDLRFDTNSSDNKSNAPYRELTGSLLYVANATRPDICVAVNELSRYVATPQALHWRAAVRVL
RYLKATPRLSIRYSRTTSKGCTIATYTDANWGGDLETHRSTSGVLILMAGGPVIFRSKRQQTVALSSAEAEYMALSLAVQ
EVLWLRHLLKEMNLKVIGATTIHIDNKSAISIAKNTGYSPRAKHIDLRYHFVRDHINKGDIALEYVPSTLQLANYLTEPL
PTPQFTRLLDRSGLMTE
>Copia-47_MLP#LTR/Copia 407-4663 64.9% sim to Copia-113_AA, SW:1346, [Melampsora larici-populina]
MSSNANVSHSSLLLAQIPKLNHTNKVDWVLGIKTYLKSRKLWKHVERDTSLSETDAKDFDKVEQLEAERASVLEVIRCTV
EPTRLPAIWGIEDPKKAYELLHAQASQDDGLEVAALIAKVATVRFNGSETISTFLDGISDLHTQIAEATASDDDLKISNK
LLAVFLLLSFPSDQFATIRDQMFGDMKNLTTSKVVSRLRTKSALSTVDENPIAMAASIKHPPAPAHRLTIPRTDKSPNAP
CVLQEHWQFTHTNGVCMKQRRNRGPTRPMNSSQPSSNQGLTDSEKIRRYNQLAAVGVVGFNTEASSQPTQATTPTPSTAA
PVPNHTSEAACQFATSYNTIATPVIDEVSFVASPSYPSPSDTHKATLADTACNRHMFGDALMLDDLRDVAPVWINVANAD
NSSRIVATKMGTAKLHAFGPDGSPSLVEIPNVLYSPSLPANLISVTELYESGFKMVDPHYGTNTNDLNMYFSNSKHILPA
YKDAGPGGFWKFYHYSEPRASFVKSSNPNNTDLWHQRFGHLNHRSTSSVMEDVLRLNPDALKTCEACTLGKQARSSHTGA
LPRSEIPGYRVHCDLAGPFPAASTGGYLYTMVLIDDATRKNWVILLKTKPQAFEAFKQFHSMLSNHAPNNKISVFKTDRG
GEFTSNEFNQYLRENGIVHEMGPPESPEQNSVVERFNRTAASRLRAQLIHGNLPVRLWGEVMMATSFVLNLCPSKSVKFN
CPEYAWQTLALNMKVPNLPYNRLRVIGCLAYSIPPGHQNKLIPRSIKTIMVGYEKNSNAYRLWDPKSNRIMISNDVIFDE
GSFPLRHLDKSTTEELTILNDDSWDEVWDIPTSSQSTTDAIHDFLQIPTPPAIPPPVPRRSERGAAPVERLGNLIGYHTV
AELNQASISQTDDGPENDEPSYSQAMKGPNREEWLAAMAEEFMSLQIHEVGRLVEPPPDADILPGMWRLKQKRDEFSRIT
KYKARWVAGGNHQIKGVDFDSTYASVGLTDTLRTLYALAATDDLEMEQFDIETAFLNGKIKHCVYVCQVTGFRDTSKPKH
VVELDRSLYGTCQAHREFNDDFDTKLKSMGFKVCPVDNSLYTLRDGDLFIHIPMHVDDGMAFSNSKSFLKQFRTNLSQHY
KFRWNENPSLHLGIHIKRDRSQRTITLDQSHYCDAMLERFGMSQCNGVKTPLPQNIRLTTPSLEESEEIEEYRCAVGMLN
FLSVQTRPDIAYAVSYLSRFNSRHNQTHWAAVKHLLRYVRRTSSFDLMFGTSKAKNLPVEGYADADYAGDIDTRRSTTGF
VYFVKGSLVSWKSRRQHCVTLSTTEAEYLAIGDCAKHGLWLCRLLEHLHQQSSISVPIKLPLSNDNQGAVFLCNEASVNN
KSKHIDIRHHFIRELTREGKIMVSHVSTKEMPADVLTKAVGANILSSSYDQLGLSQIKK
>Copia-41_GM#LTR/Copia 52-3981 via tfasty with COP7_MT, 83.6% SW:4197, 4 stopcodons. [Glycine max]
IATKFDIEKFSGSNDFGLWKIKMEAILIQQGCDEALKGESNMSPTLMHVEKKSMINKARSVIILCLGDKALREVAKEKTA
AGIWAKLESLCMTRSLAHRLCLKQQLYSFKMAESRTIEEQLAEFNKNIDDLENIGVKLEDEDKVVILLNGLPKTFEHFRD
ALLYGKDQLITLEEVVTSIRTKEFQKLQDSKITEEVSSCLATMKGKGKKGEGKWKKSRPETKKQVRCFKCQKVGHIKKHC
PEKGTKTSRVTETANVAKASKVYESAGVLVASSDDSQKTxVMDSGCTYHMCSVKDYFEDLEQKEHGTVLLGNNKACKVYD
IGTVRLRMFDNREMLLQDVRYVPELKRNLISISMFDLMGYTTKVEDGMMKVSIGASIIAKGRRRNGLYILEGSTVIGQAF
VASQTMEDKSKLWHLRLGHISEKGLIELEKQHLLMGDKLHKLEFCDQCVLGKSHRVKFGTGKHTSTRSFEYVHENLWGPS
RTQTHGGGSYFLSIINDYSKRVWVYILRNKAETFQKFKEWHTxIENQLGTKLKVLRTNNGLEFVSDQFNTFYTHHGIKRH
KIVAGTPQQNGLAERMNRTILERVRCMLLGVGLPKVLWGEAANTTVYLINRSPSSALEYKTPMEVWSGSPADYSNLRVFG
ALAYAHVKKDKLDARVVKCLFLGYAEGVKGYRLWRLDPKPFKLIISRDVTFDETRMGMYSENSECGKEKTHIEVEPLTNK
VQENTQINPTTNLDSTTEETGHSASNLRRSDHDINDYQLVRDTERRIPKPNRKLGQADLICYALTAAEEIERSTEPRNFK
DAHESEERQLWLHAMEEELEALRKNNTWRLVELPKGQKVVGCKWIFKRKGEIPGVQKTRYKARLVAKGFTQVKGVNYNEI
FAPMVKHCSIIILMSIANQFKLHLEQLDVKTAFLHGNLEETIYMRQPEGFAVDDRVCFLQKSLYGLKQSPRQWYKKFDDF
LIKMEFKRCSYDNCVYVLHQEDYLYLLLYVDDILVASCNKCMIDDLKSRLNSEFEMKDLGESRRILGVDIKRDQLKGTLL
LSQQAYMHKVVERFRMHQSKLVSTPMGQHMKLSKSQGPISDDDRKKMDVVPYTSGVGSIMYGMVCTRPDLAHAMSVVSRF
MVESGQAHxEALKWILRYINGTLDSGLLYQKNSQDGTVIEWFVDVDFAGFLDTRKxLSRYVFTLFGTTVSWKSNLQSIVA
LSTTEAEYNALAKGVKEGIWLKGMLHELGIEQETIQIHCDSQSAIHLANHQMYHTRTKHIDIKLHFIREVVESGVIKIVK
IASKDNPADMLTKSLPRDKFEKCLGLVGFG
>Copia-39_ZM#LTR/Copia 106-3945 [Zea mays]
MILWLTAMNCYHAAQGKPEQFTPEEEKMFDVADNLFRGAVIGALANKYVDSYLTCTSAKELWDALDEKFGVSDAGSELYI
MEQLFDYKMVENRPVVEQAHEIQALAKELEQFPCVLPDKFVAGGIIAKLPPSWTDFATTLKHKRQEFSVAELIGSLDVEE
RARAKDTRGKGVETSSANMVQKKNSNASHNNKKKNKQQNATKPKQAASFKKKNKGAGCFVCGSTDHWASACPDRKFKQEK
KPAQEKKTVNMVVSETAEGTSGYGNLLPTVLSVCQSPEWWADTGANIHVCADISLFSSYQCKGTGALLMGNGSHARVLGV
GTVILKFTSGKTVLLKNVQHVPSIKKNLVSGSQLCRDGYKIVFESNKCILSKYGTFVGKGYDSGGLFRLSLHDACNKSVN
NVVSNESYIWHSRLCHINFGCVSRLADLNLIPKFDLVKGSKCQVCVQSKQPRKPHKAAEARNLAPLDLIHSDLCEMNGIL
TKGGKRYFITFIDDSTRFCYVYLLKSKDEALHYFKTYKAEVENQLERKIKRLRSDRGGEYFSGDFSDFCVEHGIIHERTP
PYSPQSNGVAERKNRTLTDLVNAMLETSGLSKEWWGEAILTACHVLNKVPTKNKEITPFEEWEKKKLNISYLRTWGCLAK
VNVPINKKRKLGPKTVDCVFLGYAFHSIGYRFLIINSGVPDMLVGTIMESRDATFFEDEFPMKATHDTSNDEPTIPHEHF
IPVEHTEESHIHNHVENDNVSTRKSKRPRIAKSFGDDYIVYLVDDTPSTIEEAYSSPDADFWKEAIRSEMDSIMSNATWE
VVERPYGCKPIGSKWVFKKKLRPDGTIERYKARLVIKGYSQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVK
TAFLNGELDEEIYMEQPAGFVANGQEGMVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFVVNEADKCVYYRYGGGEGVIL
CLYVDDILILGTSLDVIKETKDFLSNNFEMKDLGEADVILNIKLLREGIGGITLVQSHYVEKVLSRFGFSECEPAPTPYD
PSKLLKKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWRALERVLRYLKGTMSLGIHYTGYPT
VLEGYCDANWISDADEIYATSGYVFSLGGGAVSWKSCKQTILTRSTMEAELTALDTASVEAEWLRELLMDLPVVEKPVPA
ISMNCDNQTVIIKINSSKDNMKSTRHIKRRLKSVRKLRNSGVIALDYVHTSKNLADQFTKGLSRSVIDSASSEMGMRPT
>Copia-42_SB_pol#LTR/Copia 2567-5875 [Sorghum bicolor]
EYSSGRTSWVLDSGCTNHMTGEKDMFTSFQPSGEQSGNIVFGDNGKGEVLGLGKIAISNDNSISNVLLVNSLSYNLLSVS
QLCEMGYNCLFTDKGVEVYRREDSSIAFTGHLKGKLYLVDFTSNRVKPETCLMAKSSMGWLWHRRLAHVGMRNLAKLQKG
EHILGLTNVSFEKDRICSACQAGKQVGAKHPAKNIVTTERPLELLHMDIFGPVAYISIGGNKYGFVIVDDYSRYTWVFFL
RDKSEVQGIFKKFARRAQNEFDVKIKKVRSDNGTEFKNTNIEEYLDEEGIKHEFSVPYTPQQNGVVERKNRTLIEAARAM
LDEYKTPVNFWAEAVHTACHAINRLYLHKKREKTAYELLTGKKPKVHYFRVFGSKCFILNKKSKSSKFAPKVDEGLMLGY
GTNEHGYRVFNKTSGLIEIAVDMTFDETDGSQKEQVNVEIVGNEAAAQEAIKKLAIGEIKPIEDDDEESAVHIDHDSTIH
HGSSNEHGEASASRINDDCGNNVQAQPHLNLDHTSEDNHPQDHGLGLPIDHGYDDEEDDGPIHRSTQVPHPRVHQSIQWD
HPVDNILGSIRRGVTTRSRLASFCEYYSFVSPLEPRRVEEALDDEDWMMAMQEELNNFTRNEVWSLVERPNQNVIGTKWV
FRNKQDEHGVVTRNKARLVAQGFTQIEGLDFGETYAPVARLESIRILLACAAHHDFKLYQMDVKSAFLNGPLSELVYVEQ
PPGFEDPKFPNHVYKLDKALYGLKQAPRAWYDCLKDFLLKQGFEIGKADATLFTRKVNNDIFVCQIYVDDIIFGSTNEDF
CEEFSRIMTNRFEMSMMGELKFFLGFQIKQLKDGTFISQTKYTYDMLKKFDMDKAKPIKTPMPTSGHLDLDQGGKDVDQK
VYRSMIGSLLYLCASRPDIMLSVCMCARFQASPKECHLMAVKRIFRYLVHTPNLGLWYPKGSTFELLGYSDSDYAGCKVS
RKSTTGTCQFIGRSLVSWSSKKQNSVALSTAEAEYVAAGACCAQLLWMKQTLKDFGCELTKIPLLCDNESAIKLANNPVN
HSRTKHIDIRHHFLRDHEAKGDNALQHVSTDKQLADIFTKPLDESRFCALRSELNIIDSRNLT
>Copia-45_Mad#LTR/Copia 132-4474  [Malus x domestica]
MSWINSXVHPTVLAALIGKTSSHSAWTTLRDRYASQXTGRLLQLRSELMNTHRGXSSISXXLDKINCLADTLSLSGAPVS
DSDIVAIILNNVGPAYESTVASAQARDEAITYSALEALLLGAERRQQIHSAFXTDSGLTVLAXXXNGNRAPASSRGRGSS
TGFRGRSNFNTGRGSTNRHYSSSPSHQGSYYHQGSNXXQVSHSRPHDGILGTSPSQGTFTTSRIQCQICNRYGHSAIDCF
NRLNMSYEXRVPAPRLQAFAARAPPASATAXAIQEWLFDSGANAHITNNLATVAHPHPYTGMDQVNGVVGGTGLQISHIG
NTSIRTPTSTFTLPNTLLCPNASTNIISIHRFTTDNNCSLTLYPNSYCVQELHTGRMLLQGPSRNGFYPFSGVSSSIKGV
SAFLGTRVSNSIWHSRLGHPSSHILQXLVSRNKLPIKXVVTSXLCHSCPMGKSHKLPFPLSVSRSSSPLQLVHSDVWTSP
SFSINGFKYYVVFIDDFSRYSWXYPXKLKSDVFLTFVSFKKLVENMFHTTIKSFQTDGGGEYVNNKFKIFLTQHGILHRF
TCPHHPEQNGXSERKHRHIVETGLTLLAHSSLPTSFWDDAFHTANYLINRLPTKVLHDESPFQKLFQKSPQYDFLKVFGC
ACFPFLRPYNTNKLQFRSKRCIFLGYSLNQQGYXCLDTSTGRIFLSRHVLFDETNFPYKESISTXSSSSQSSMVLNIDPS
SFHYPSRNPIFPTVPPNPHPSNLFPILSHPPNPSPIPCPLPPHPXHHMHPTIPSPQPNPISSNFPPNPHLPAPSSIPSPT
TAXGVAPVSPSSQRQIQPVHSMVTRSKDGIQKPNPKYALVSDVTNELVEPSCFTQANKSPEWXMAMAXEFNALQSXGTWS
LVPSHPSMNVLPNKWVYRIKRKSDGSIERFKARLVANGFHQQEGLDYSETFSPVVTHATIRIILSVALHFNWPIRQLDVK
NAFLHGSLNEEVYMRQPSGFVDPQFPSHVCRLRRSLYGLKQAPRAWFQCFSHHLEELGFQASMADSSLFIFCNGTNVIYL
LIYVDDILVTGNNPAHISTLIHQLGRKFSMKDLGPLHYFLGMEITRTPTAMYLTQSKYILDLLKRTQMADAKPLSTPALP
GRKLSLYEGEPLADGTTFRSIVGALQYLLFTRPDIAFAVNQVCQYMHSPTTTHWVAVKRILRYLKATHDRGLVYKPSFLS
LTAFADADYAGDPDDRRSTGGHCIFLGDNLVSWSSKKQRGVSRSSTEAEYRQMAYTAATLSWFRHIFCDLRLPLTPPKLW
CDNISALGSGFQSSNFPPNPHLPAPSSIPSPTTAMGVAPVSPSSQRQIQPVHSMVTRSKDGIQKPNPKYALVSDVTNELV
EPSCFTQANKSPEWRMAMAEEFNALQSTGTWSLVPSHPSMNVLPNKWVYRIKRKSDGSIERFKARLVANGFHQQEGLDYS
ETFSPVVT
>Copia-43_PIT#LTR/Copia 41-4483 67.2% sim to Copia3_XT, SW:1480, [Phytophthora infestans]
MVKGHNRSAQVLGLEKFHGEDYTMWRDKVLTHIETLDEKYQRGLLEKDQPEATVVMMDFLEGTPEKPIISVEGNISQEEA
KAKRWRHQHWTRARSELLNLFNQALPNVFLSGLPDQVFRMNPCDIWKELEQKYGLGDAGGVIELRRQWERLLAANWTNLG
ALFAQLKKLRNDINRKMRGLVGKDMVTETWLCMEVLALLPSEFWGGTIIMTEEWFSIENVETSLRRVFGDRSRKEATMLT
DKRRPVTVNAARKFTGKKRNQGQSSEVAVSECFYCFEDGHWKKACPVLAADRNPKRAGGKLLRSNIRAAPVTETKRAMTV
KKGGKSTTKRMKVNQDEERTPAQAAKFDLNLNEAIEDADELEYKGSVPASEGSEDEAPMHSMEIDDEVRRRYPEYLSKLR
ELNLTDDLWVVDTGAGHAISSDRRWFSQLGKGRTHIFEYGNGGTSSTKLQGTVRFSILKPRGYYSDFSIQNVAFDKECGS
NLLSAYYLATQGYHHIQSKGGQYLYFLDSKNRFIFAAVAIDEVYNLPSRKLDNNSRVLSVDSTSQSKIQKTLKEWHLRLG
HVGKGRLMNILAGRVIRDAPQLSRKKMELVSFFCRTCVLAKSRRMSYRNKVTDKVSEPLHTLHMDSLGKIRPQGLYNTTG
HKYALAIVDDATAYKWYFVLKSLKEVGVIVKTLIKQLEKQFPYKVKRIRTDGGTEFVNEFLKGYCDRSGIVFQKSNVESQ
EENGSAERAHQTIMGKVRCALIGSGMAAKWWPEALKYMTAITNRIPTARLKGKSPYEALFGTKPTGIELHIWGSTCYAHV
PKSKRPNPKLSERALECKLLGLSEDYKGYRLLDIKGNRYINARDVKFGPTFTEGLILRSFPSGKIEENEEIILEVGEKGK
RKRETGLDVSNKRPKSNSELEECAPDTETVGVKKQRVSVPPIPRSRRKRTPNSRLKDYLVSINAVTISTKVIPIPRSIKE
ARRGPHAQQWETALQAEFQALVANSTWEIVPLPKGRKILGCHWVFDVKYNPDGTVDRFKARLVVRGNTQTHGVDYNEIFS
PVARYESLRLLLAIATIKDLHVHQMDVSTAFLNGSLLEDIYMQQPHGFRHGDASSVCKLKKSLYGLKQAPRIWYALLNKF
LVSLGFCRCKKEYCLYRQKWEVKGVTHIVLVCVYVDDITIASSSMTLMQKVKSQLASRFTMKDLGDIHYLLKMEIKRDRA
NMILSMSQHKYIMDLLQKFDMTDCNSEPTPQAKSIVLEKEEKLSPDEISAQPFDYRGSVGSLMYLVRGTRPDIANAIREL
SKFLSCYNKSHYRAAQRVLKYLKGTSTYGLVFDGKSKEVIYELYTDASFANANENRKSVTGYVSIMADACITWKSSRQST
VSLHTAQAELIAASEGIKESEWLWVLLEELGFKQTQPIMCWCDNKGAISIIKDPANHTSTKHIDIKGLYAREIHDKGRIV
VSYCNTNDMIADALTKALPQTQFEKLRSLMGVKNLCLPLPQ
>LTRX1_XT_gag#LTR/Copia 132-1271 [Xenopus (Silurana) tropicalis]
MDVLAKKIAKVTCSGEIVKCMQGSPDPWAKAQVYVTRAIQEKCMSKSKGKSALVFAACWIAEQYKTLAVQKENLEGKILY
LNDTIDSLKFSVENAAAISISNQQTMAENKKEIAQLKQRLRDAEGTIKSLVATSTSNVGADHSKCISEIKGLKAQLRSPV
VSAVTGQNNTKGRDLSANGLKESSRKCETASEGNVTSLECTSHARPSKLISNCAEYRTDKLKDNSPGKQVSNPLQSRKQH
NKERVSAIQASLPAKQTCNNSVKKHTEKKVFRCYVCSKVGHIARYCTLKHYYWDNNNWYNERENWNSSRWGFQKKSRNGN
TWIPYQVLTTQKERLSAENSNLQNAWGAFKKELESIKLELSQIKGRRANENRGKHNVNMP
>DM1731#LTR/Copia 95-3942 via tfasty with Copia2, 2 frameshifts. [Drosophila fruit fly genus]
MSNLYQIDKLEDGSYETWSIQMRSVLVHACLWKVVSGESVKPEVDTGGAWQSQDEKALATIILSVKSSQLGYVKGCLTAA
EAWKVLQDVHQPKGPLRTVMLYKKLLSKRLLEGQSISSHIKEFKEIFDALDAVEIGITEKLRSVVLLSSLPESFENFVVA
IETRDDVPLFDALCIKLIEEDTRRGGAEQQREKQTESAKAFTAVHKPQAPAREARPSAKKRKDVVCYNCGERRHFKANCR
REKVNKESATQEQCSLLNALDSGGFWQTQWCLDSGATSHMCCDRSVFTEFEEHTEKISLAGNGFLLAKGIGTVKLKTDLC
TLVLNNVLFVPDLNGNFMSVSRAAQYKCFVNFGPHYADVIQEGERILRVMRAGNLYMFQGKHNSCFAAVDADGSLWHKRN
GHLNTSSLQEMVRKKMVYGVEKVVFKPDAVCKTCMLAKIHVQPFPKTTRSRAEELLDMIHSDLCGPFSTPSLAGSKYFLT
FIDDKSRRIFVYFLRKKDEVFTKFVEFKKLVERQTGRKIKCIRSDNGGEFVNNVFDDYLKAHGIARQLTIPHTPQQNGVA
ERANRTLVEMARCMLLQSELGEALWAEAINTAVYLRNRSTSRALQSKTPMEEWTGKIPAVSHLRVFGAIAVALDKGVHKG
KFESKGKEYRMIGYSIAAKGYRLFDKEKRCVIEKQDVLFDESGSLVNHGNTIEFQFPATDDPEPQSDSNAREGDDTEPVG
SSDDYESAAEAEEAEVHVGPGRPKIVRTGRPGRPKKQYNVLGVLMASDVEIPKSYEEAINSQYSAKWEEAMGLEYKALLA
NETWKLADLPRNRRCVACKWVYSLKRDVSGRIERFKARLVAKGCSQKFGVDYFETFSPVCRLESVRLILALAAEMQLYLH
HMDVCTAYLNSELKDTVYMKQPQGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACNHEPCLYQQSGQG
NLMLILVYVDDLILACQSREDMEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGHSQYIKELLRDYGSENCRP
ATTPLDAGHQVLCAGEQCQKVDAGQYQSTIGELMWLGLTTRPDMLHSVAKLAQRNQDPHSEHMVAVKHILRYLASTVDVK
LHYQKCGQAFTGFVDADWGGDRLDRKSYTGYVFFLSGGPVSWRSEKQQSVALSSTEAEYMALTTACKEAIALRRLIVEIV
CGDLKTPTVMHGDNLKCAAQLAKNPVHHSRTKHIDIRYHREVMKEGHVVLEYTSTNEMIADIMTKNLSKGKHNGFMKMLN
LF
>MTCopia2#LTR/Copia 332-4654  [Medicago truncatula]
MAPRNNSPDTESVFFVHPSKDPNSLSITPKLTGSNYIAWNRTVQRSLGTKNKLGFINGAIPIPDVDDLNRSAWERCNHLV
QSWLINSVSDSIAQTIVFYDTAFEVWHDLQERFSKVNRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPN
CSCIHPCRCEASRVAKTHRNEDQIMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEESNNASLSSLSISDDSSIQ
INASDARKFQGSGKNPSQPKPTRLCTFCNRTNHTVDFCYLKHGYPNVNKAQPRVNAVTYEDVDAGTSSSIGQGSSTSSNA
GFSQEQLVQLASLLQQANLVVPASPSSQASSNHISANPLISTTISAPESSSAGIIPKPSYWLLDSGANEHISCNLSFFSS
FYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGL
AKQMDGLYKCTPSSCSSNSVFSSVSNKSCNVVAAISCNSSISIPSNALWHFRLGHLSHQRLHSMSLLYPNIINSNNKDAC
DLCHFAKHKHLPFNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVINFITMIQ
TQFHITPKFIRTDNGPEFILSTFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHVVFL
INRVPTPILHNQSPYFVLHHQLPALNLFKVFGCLCYASTLQSHRTKLQLRARKSIFLGYKSGFKGFTLYDIQSREIFVSR
HVTFHETFLPYPHTSLSTTPDWEYFSSSHVYDVSNQPTPINSPTIIDDILPPSPPLNPPPPPPIPVVSPASRTSIRQTTT
PSYLQDYVCKNIHTSPYPINNYISHHNLSNNYSSFVLSLHTTTEPKSYAEASKHDFWKQAMQVELQALEKTGTWKLVDLP
SNIKPIGCRWIYKVKYHVDGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLH
GDLQEDVYMLLPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTYVLSHHHYIQASSDHSLFVKKTSFSFTILLVYVDD
IIIVGDSLTEFTHIKSVLDASFKIKDLGQLKYFLGIEVAHSKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSTKLHH
DSSPSYADIPSYRRLVGRLLYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINLQGFS
DVDWAGYLDTRRSISDQCFFLGNSVISWRTKKQITVSRSSSEAEYRALASATCELQWILYLLQDIYIACPKLPVLYCDNQ
SALHIAANPVFHERTKHLEIDCHIVREKVQAGILKLLPVSSQDQVTDFFTKGLLPKPFNILLSKMGLINIYQPPSSGGLL
H
>SHACOP3_MT#LTR/Copia 31-4644  [Medicago truncatula]
MSTSSPSDAQRVTAAASKTFKQVVSVKLDDTNYLQWKQQVEGVLRGTKMVKFVISPDIPPVFLTDAAREAGTENPAYTEW
EEQDSLLCTWILSTISPSLLSRFVLLRHSWQVWDEIHSYCFTQMKTRSRQLRSELRSITKGSRTVSEFIARIRAISESLA
SIGDPVSHRDLIEVVLEALPEEFDPIVASVNAKSEVVSLDELESQLLTQESRKEKFKKAAISEPVSVNLTETANSESQSH
GPNSQNHNYTDGTGNNQFPNSNPNFGGRNGQFRGRGGRFGGRFRGRGGRFGGRSNVQCQICSKTGHDASYCHYRFFVPQN
DYYSPYGSPGGYGAPPNVWMQNMSRPQHSGQFLRPPTQAANQRGQAPQAFLTGSDPYNSFNNAWYPDSGATHHVTPDASN
LMDSTSLSGSDQVHIGNGQGLAITSVGSLQFTSPLHPQTTLKLNNLLLVPSITKNLVSVSQFAKDNNVYFEFHPNHCFVK
SQDSSKVLLRGILGHDGLYQFEHTKSFKTTAPVSQNSSVNTVCNKVPAQTDNSASFHLSPSTGFNFNNFQCNNVEHLPSS
STSSSTQSFPSMYGIWHSRLGHPHHEVLQSIIKLCNIKLPNKSLSDFCTACCHGKVHRLPSFASQMTYTKPLELIFCDLW
GPAPVESSCGYTYFLTCVDAYSRYTWIYPLKLKSHTLSTFQNFKTMIELQLNHKITSVQTDGGGEFLPFTKYLNSLGITH
RFTCPHTHHQNGSVERKHRHIVETGLTLLSHAQMPLKFWDHAFLTATYLINRLPTPVLANKSPFFLLHLQFPDYKFLKSF
GCACFPFLRPYNSHKFDFHSKECVFLGYSNSHKGYKCLDASGRIFISKDVVFNEVKFPYLDLFPSQKVCSVLPDGPTLST
FLPTPVSTTFTVNSHTPQNSHSESGPHIVNSPTPQTSHSESVPTTPISNTPQTPSISSHHSESSHRNNVVLNPTPITILS
PSASQNSSPESSASVTSSQSTNSESPPPVPHRIHPQNCHTMRTRGKHGIVQPRINPTLLLTHVEPTTYKTALQDPKWHLA
MQEEYNALLHNQTWSLVSLPANRLAIGCKWVFRVKENPDGTVNKYKARLVAKGFHQQAGFDYNETFSPVVKPVTVRTVLT
LAVTYNWTLQQLDVNNAFLNGVLTEEVYMVQPPGFESSDKNLVCKLHKALYGLKQAPRAWFERLKSSLLSFGFKSSRCDP
SLFTLHTQAHCIFILVYVDDIIITGNSKLAIQNLVHQLNSEFSLKDLGILDYFLGIEVHHSPSGSLLLSQTKYIKDLLQK
ANMINANSMPSPMASSTKLSKFGSSTVSDPTFFRSIVGALQYATITRPEISYSVNKVCQFLSNPLEDHWKAVKRILRYLQ
GTLHHGLMLTPASSTEPIAITGFCDADWASDPDDRRSTSGACIFLGPNLVSWWARKQTLVARSSAEAEYRSLAQASTEII
WIQSLLNELQIKSKIPHVYCDNLSAVSLAHNPVLHSRTKHMELDIFFVREKVIRKELNVSHVPAQDQWADVLTKPLSTAR
FLYLRDKLRVCDTLRLKG
>OSSER#LTR/Copia 242-4628 via tfasty with Copia3_CR_60-5081, 3 frameshifts. (Copia4_VC very similar, but with even more shifts and stops) [Volvox carteri]
MSERMTYTERLNVANRTTWLIRTKAEIIKLKAGSALVNALDESNSTSVERHQTACAVICGLLDDKDLPLLEKHKDARDLL
NALDERYKGLMEHHVTRLWRDFNAFKMQPNQSLRDYIKRIKDIVEELTACKQPVADANAVLIALKGLPSRYDPYVAPYYS
TTLMPKTLDELENNLLGVETVIDERASTSVLPNTLFAGKGDQDRGNERGGGNSRGGGYRRGNKYGGGNGIRCFQLQGNRS
LRQGMPKPKKECAKCHLLGHTAEECRNRRRRGGDGGAGNDGGYAAAVVERPLFMLELGDSPSRTVAAEMLELESTPAFTV
SPSAASGSTETSGPQLRELDATWYLDSGAIYHVTPDARSLRDYKPCDPIPLKCGGGEVHYAVGYGDLLVEVVKEQTDCYS
FHIGNNYYHKQKGPVVIKIRNVYYVPGFKFRLLSLKQLTNNGAQFSGSGTSMDVWNSRERWSLYAHCKYSVYSVKVKEKL
PRMQSGGPVASVHLVADRARLWHSRFGHLSYGNLARLADEEMVAGLDVTPKKFREVGAAVCEGCVMGKHSRKPFPESHSS
VGRALERVHMDLAGPMSVESYGGNSYVATFLDEYTGLSVVSFLKLKSEAIAVVKSVLTLLENQCGQKVKEVRTDRGREYL
NAELREFYGERGIVHQTSAPYTPQQNGIAERLNRTLMEKVRCMLIESGLPSRGWALAMHTANYLRNRSPVHGLKGTPFER
FYGQKPDVSDLRVFGCVAYIRVPDHQRRKIDPVSMKGVFVGYEPESKAYRVLMPDGRQLVSREVKFDERAFGLMSVKGLQ
YRVEVVRDEDEESETGWMQEGEEESEDSSDVQSSISFDVFEGSATVGANDSSGAEPASTSGGPVTVGANDSSGAEPASAS
GGVGTVGANDSSGAGSASASGGVGSVGGNNSSSTLSAEGGNEQPRNPPQLRTSTRSNKGVPPVKLNLSAVNGVPLTYEEA
MKSPEAPMWKQAMDEELASIRANEVWRLEIPPKSVRPLPVKWVFSLKKDEHGEIVRYKARLVAKGFAQVEGRDYEEVWAP
VSKHTTLRALLSVAARDLELHQLDVKTAFLNGELEETVYIQQPPGYVEGEPYLACKLEKALYGLKQAPRAWYARLRSELE
AMNFTVSQADPGLFYRDVLGERVYLLVYVDDLLIAAKDINIVRQLKDKLKSIFDVRDLGEARVFLGFEIERNRAERTMKV
SQKRYAKGLVEKYGLEDANGRAVPLSHGTTLHSAGQPLDVRQFRFGELIGSLLYLSVGTRPDIAYSVGALARHMSKPTVE
HWQAAKGVVRYIAGTAGLGIVFSPKSSNPSLHGYCDSDYAACVDTRRSTTGYVFLNAGGAVSWSSRLQPTVATSTAEAEY
MASGAATKEALWYRHLARDLQMRVSSVPILCDSQAAIKIINNPISSARSKHIDVLHHFVRERVARGEIVFSYCKSADMVA
DCLTKPLPLPQFKKCIQAMGLR
>COPIO_env#LTR/Copia 6642-8174  [Oryza sativa]
MPPRKQTSHKSKRPRDRSPTPSSHDDSDSDWSGGEDAVPQVARVARGGNLPPRRSTQAHGGGGDGEGSSRQPQTPPHQPN
VPIGPLRIHTPERDPAVIRQVYDWRRKSEVVAPRRDEDPRSLRRTATDPRFWTLFQQDFYESVIKSKAHPTVPMQWINWE
ELQAHNDPVINSVIANCDLMGIRSFMTLQQNWCNEVIAQFYATVYFDRYRAMHWMTQGSWYSVSYQQLAEIWGFRLRSLL
NLDDLHNLQIPANTDLLPLYTPNDPNVVLGKVDGLKPYFAYLNRMFRRSFVPKDGDASSINHLSRTVLLRFDPPPHRFHV
YHFVWEENRMASIQYKKGLVYAPHIMRMIETVTQLQFRHDVTHSQLHLRLVKAPRSSAARDIPSSSTQPPPAPERPASVA
RREPSPLFRILRSLFGLCSAEAKKNRRLRNSAKKTARDVKFLKARYYEDHHIDIPPSPPGFEAEPDEPEDEEIEDPFAGL
PPDFDFFGYGHGYGYPPPPPPEDPPQAPFA
>Copia-123_SB#LTR/Copia 41-4339 via tfasty with Hopscotch_pol, 2 stopcodons. [Sorghum bicolor]
MAASSSSSSSNSHHSSFGPAISEKLTCDNFLLWNAQIMPGIKAAQYEGYLDGTEPAPPKLVELIKEDKTKHTAINPDYER
WLKEDQQLLAHINNSLSREVLGQVAMMTTSADVWTALSNMYAAQSQARVTNLRMQLVNCKKGGQTAAAYFAKMKTLGDEL
AAAGRPVPDEELVTFILAGLDFDYNPLVSSVMGRTNPVSLSELYAQILAYDMHLQMLQDNAGHSSSVNAASCGRGGRRGR
GNFGRGYGGRGNNNNNNISPPPKAGGQGGAKPICQVCKKKGHEADVCWHRFEEDYQPNVKTAGAASMNYGVGTNWYADSG
ATDHITTELEKLSVRDKYKGSDQIHTASGSGMQISNIGHAILHTPNKNLHLQNVLHVPSANKSLVSVHxLTSDNNTYIKF
HPHYFLIKDRATKRVLHRGKCEGGLYPLKSQEAGAQCHKQACRVARPSTWRWHSRLGHASFPVVERVIRNNSLPCSFDHD
SESVCDSCQRAKSRQFPYSSSMNKSCAPLELIHSDVWGPAPVSIGNHAFYVSFIDDYSRYTWIYLLKHKSKVFxVFKNFQ
KLVERKFDKRIIHVQTDWGGEYEKLHTFFNQLGISHRVSYPHTHQQNGRAERKHRHIVEVGLSLLAQASMPLKFWDQAFL
TATYLINILPTKVLENKTPVELLLKEKPHYNSLRVFGCACWPNLRPYNTRKLAYRSTQCVFLGYSSLHKGFKCLEPTSGR
IYVSRDVVFDENVFPFSTLHPNAGARLRNKISLLSDNSSGDVFCHVPNITNSTMPRNSVAIQEQGDMQEVPEISDGEAID
LVATPDPGADPAADSAAEPPGVIAPVSDELAANGDTLHGEIGSSSGSSSPVMVDPAMPSGSSVVTTDDLNATAGTQEGVM
PDSEVERPHPRTRLQNGIMKPKVYMDGTVRYANLCTTGEPDSVDEALKLPKWRDAMQDEFEALQRNGTWSLVPPSQGRNL
IDCKWVFKIKRRANGEIDRYKARLVAKGFKQRYGIDYEDTFSLVVKIATVRLVLSIAVSRGWCLRQLDVQNAFLHGVLEE
EVYMRQPPGFQDPKHPSFVCKLKKAIYGLKQAPRAWYSRLSSKIVSLGFVSSKSDTSLFIYRNKGIEIYMLIYVDDIIVT
GSSQDAVKILLKALKEDFALKDLGDLHYFLGIEVQRKSSGDLLLTQKKYTRDILLRAGMTNCKPVPIPMSSIEKMSQHDG
SPLGPRDSTNYRSTVGALQYATLTRPDLAFAVNRVCQYLHAPTTVHWSAVKRILRYLKFTEDTGLLIRKKSPLIISGFSD
ADWAGSRDDRRSTGGFVVFLGSNVISWSARKQPTVSRSSTEAEYKSMANTTTEMMWLEQLIGELGVSLKVKPRLWCDNLG
ATYLCANPVFHARAKHIEIDFHFVRERVTRKQLEVRFVSTEDQVADGFTKALSQRKFEEFKSNLNLVEKTSID
>Copia-116_SB#LTR/Copia 37-4364 via tfasty with Copia-54_SB, 3 frameshifts and 4 stopcodons. [Sorghum bicolor]
MASSSSSSAQQFVISALGFLPVSEKLTRGNFPLWKAQVITGIRGAEAFEFLSPGAAPPAKYLAKKAGDDDKEPPILNKEY
TTWVAKDQQVLSYLFVSCGQEIRQQISSATTVAQAWAKIEEFFSSQSRARVISTRMALATASKGNSTVAEYYTKMKGLVD
EMASTGRRLEDDEMVSYILTGLGDDYDSVMTSVANRVEPISLGELYTQLVAHExRLELRNGGSNSSVNLASHGGRGGGNS
YNSNRxRGGFTRGGGGGGRNNNNNKGGRNVTRVPFQAGVICQVCGKEGHPALNCFKRFDATFLGPPQKSVFASTSGYGVD
TNWYMDSGATDHITSELDRLSFCDKYHGGDRVHAANGSGMEISHVGHSIVQSPSHKIHLCNVLHVPDASKHLVSVNRLTR
DNNVFVEFHPDHFSIKEAVTKRTLLRGRAEGGLYPIKSFSSSSSPNKQALGNVKPTSSIWHSRLGHPSAPVISRILTRHQ
LAFTHDVKNKHICHACQQGKSHQLPYPKSTSVSSNPLDLIFSDVWGPAPQSVGRFNYYVSFIDDFSKFTRIYFIRHKSEV
FERFRDFQNLVEHKFDWKIKSMQTDWGGEYQSLNSFFNRIGIHHLVSCPHAHQQNGAAKRKHxHIVEMGITLLAHASMPL
KFWDEAFQTAVFLINRLPSKVIEYDTPLHRLYEEEPDYTSLHTFGCAIWPNLRPYNTRKLQFRSKRCVFIGYNNSHKGFK
CLDPKYGRVYISRDVVFDESVFPFASLHSNARAKLRAELQVLPDVLRNPSVSFRDALIHDQHVNSPNTSNVETSLGDVQV
QESTSDENHSAHAPYRMCRQAGSSANSDDDLPARSGDSVSAPVSGSQQISPDVMATTSSPHTESGELLPSAQADPNEGRS
LCPSDPLRRLISWLRAAPSPTGPMTRLQHGIVKPKxFTDGTVRWGMTATMPQEEPANVHDALKDQNWVAAMNLEHRALIK
NKTWHLVPPPKGKNIIDCKWVYKVKRKADGSIDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRLILSVAVTKGWSLR
QLDVQNAFLHGILNEEVYMRQPPGYEDKAHPRFVCKLDKALYGLKQAPRAWYARLCAKLESLGFTPSRGDTSLFYYNKGQ
CSVFVLVYVDDIIVASSSEEATKVLLADLQKEFALKDLGELHYFLGIKVKRNKDSLVLTQQRYAANILARTGMSKCKAID
TPLCSTEKLSAYEGRTLGPDDATRYRSLVGALQYLTLTRPDVCFAVNKVCQFLHSPTSTHWSAVKRILRYVQGTLNVGLR
IGHSKNMSVSAFSDADWAGCVDDRRSTGGFAVFLGENLISWSARKQAIVSRSSTEAEYKSLANATAEMISVQRLLKELGV
HHHPMAQLWCDNLGAKYLSYNPVLHARTKHIEIDFHFIRERVAKKLLEIRFISSNDQVADGFTKPLPRVKLREFRNNLNL
VCG
>Copia-127_AA#LTR/Copia 30-4045 via tfasty with Copia-96_AA, 1 frameshift. [Aedes aegypti]
MERSGIAKLTNENYETWKLEVEFLLVRESLWKYIVPGVKPEEAENGANVAELAAWDEGDQKARATIGLLLTRSQHGHIRA
TRTAKDVWENLRKQHEKKSLTSKVHLLKRICDLKFQEGDDIEEHLAEFETLFEKLANAGTKLDDDLQVILVFRSLPNTFD
ALTTTLENRSDDELTLALVKDKIINEVQKRGEAVPADSAVLKVDGKGKSIVCHHCQKVGHKKRDCALWLKQNRGENSRSQ
QAVAIDTKKVARQHAKARKAASSEENFVFSAREGPVMNWIVDSGASSHMCANREFFVSVENPREGTPSFVTVADGKKAAV
KGVGNCQIQCYGRAGEEKQIVLTGVLYVPDLDMNLVSVGKLVQKGADVKFNESGCTIASGDRIAAVARRSNGLYHLQMVE
RVGAVNERCVSKSCLHDWHRKLGHRDVKAIQELENRQLATGISIKKCGLVLPCETCMQGKMARLPFPKKAEKKTSAVMDL
VHSDLCGPMRTVTPGGRRFFLTLIDDHSRYTTVYLLKRKSETFDAIQDYVQKMKTQFGKPPKVLRSDQGGEYRGSNLVAF
LKREGIKQQFTAAYSPQQNGIAERKNRSLVEMARCMLLEAKMSNRYWGEAINTANYLQNMLPTKAVELTPYEIWHGAKPD
VSKLQVFGTTAYVFVPDAKRTKLESKAEKLTFVGYSLQHKAWRFINMKTNKLTISRDARFLPPTDNNEEVPADEKGTLFF
PLSFETEQQKQASLPGPAVAAGNEPVVSDSEDDFHGFEDHSDDSQYEDAGIDDDDHAVPQDEDVSQPEVELARNEQAVST
PLRSTRMNKGVPPQRYCADGRLAHYNCDEPRSYPEAVSGPEANLWKQAMQDELKSLHERNTWELTTLPPGKKAIGCRWIF
KKKADESGKVIRYKARLVAQGFTQKYGVDYDEVFAPVVKQLTFRALFSVASQRNLLVKHADVKTAYPNGDLKETVYMRLP
PGCAADGENVVRHLRKGLYGLKQAARIWNHKLDDVLKQMGFKSSKNDSCLYVRRSKGKLAYIAVYVDDFVIVCETEREYE
DIIKKLNEFFTVTSLGDIKFFLGIRVTRSEKHIALNQKRYIKKLLSRFGLEDAKPSSFPLDPGHLHPKEEIPLPNNHQYA
SLIGGLLYVAMCTRPDVAAAVSILGRKTSCPSQADWVEAKRILRYLKGTVDHELILGADSKQLEVFVDADWAGDTKDRKS
TTGYLIRYAGGMIGWCSRKQECVTLSSSEAEYVAITESCKELSWVLRLFDDLDIKTQLPVIIHEDNQSAIKQLESNSSER
RSKHVDTRFHYARQLKQQGIISPQYLPTNEMIADMMTKPLPRVKQSRFRVAAMILPSRR
>Copia-131_AA#LTR/Copia 370-4377  [Aedes aegypti]
MENRLKRVIVPLFKGDEKSFPFWKKRMEQHFKFEGLLHTLEKTPEEEDFFQPVAGASAAAETERKDKLQARLKEEDAAVN
ELLLAIDDEPMGHIMHCAYAKDIMDRLGEIFMKRGPMAMLGLRTKLLSLKSRKFTCLKQLFATHQEIIRDLESMGEVIAS
TEKLTSLLVAIPDEFQHLIGALSVLRKDDLDTMSLEQVQRVFLDAEEGKTKRNTPGPSQVAMTAPQQNYRNLKCFQCGRY
GHKMRNCREARRRKEASKPTFHTHPGGKKRDVALVTRQNGAFMVRIPLDELNPDLRRDCRVFQMDFKRLPVPSPTFGGVT
LLDSGASNHMFRDAQMFNEMWDYVANIETAKEGEMMRTRRAGNVNLRTNKNFNVHLYNALFVPNLNFNIVSVSRIESTGK
AVLFRNGGVEILDNDGTVILTGKRVNGLYILDIEFVGYANKVFASKMLSDAELWHVRYGHLGAQNLNKLVRDNMVERLDV
ELSAMSDCPFACKSCIYGRQTREVFDNSITSRSNRPLELIHSDVCGQLPEETYDGCRYFVSFIDDYTHFTVVYLIRYKSE
VLDKFREYEAMATAHFNLRIAKLRTDNGGEYFGGEFVRFCRERGIQMTPTAPYTPQQNGVSERMNRTLMEKVRTILHESG
CPFMFWGEALYASTYTLNRGPASALSVPKTPYEMWFGVKPDVSKLKVFGCIAYTHVNMEYRTKLDKKSRRLCMMGYAPNG
YRLWDENFDRIAVSRDVKFDEHHFYFPKVDDELQENPNFCEVEKRPELEIIEVENDLPLNENSEDDFVSVGEPSENEFQD
IPEQEGRPQRTIRPPAWLRDYETVALSLNGSGDIPQNIDELRKRTDWDQWKQAIDEELRALKENNTWTLVDELPEGHKAI
NSMWIFNIKDGETVRYKARLVAKGCSQRPGIDFSDTFAPVAKMTTIRTMLSIAVKKNWIIHQMDVKTAFLNGNLNEEVYM
KLPRDENGIVKICKLNKSLYGLKQAGRNWNQRFNEVVTQLGFQRLNSDTCLYKCPEKDLFIILYVDDILLFGSNISGIKW
IKEKLSDYFKMKDLGDVKNFLGLEISRNLERGTIELSQQSYVDKILDTFGMKDCRAASTPMDLNCKWVRSEKCTDKPFKE
LLGCLQYLTLMSRPDITIAVSILSQFQSMPGDEHWVGLKRILRYLHGTKTYRLVYSREKDDEPLKGYADADFANDIEERK
SNSGNVFLVYGNIVSWKSKRQQIVTLSSTEAELVSLCEAGKEGVWISNLLREVGISSIPFTIYEDNIPCIRISEEPREHQ
RTKHIDVRYMYVRNLIHEKKIVLEYIRSEDQIADMFTKPLMKSRFNKMCELIKMIN
>Copia-129_AA#LTR/Copia 78-4082  [Aedes aegypti]
MVLPRDDPNSQGGGRSTGGGTAGTGQGDGATTSGGSVRPAAPVRSFGNAVSLPAMEKLKGRQNYASWSFAMKMILIREGT
WRAVKPAEDQNVDPEMCERAFATICLALEKQNYSLVKTAKTAREAWEKLQQAFQDNGLIRRFGLLDKLTSVKLEECETVE
DYVDQLVTTSNDLSEIGFEVNDQWLASLLLKGLPEYYNPMIMGLQASGINLTADVVKTKIIQDVKWPLKSSGVGGALYTK
PKSKHSKVDKKSGLCFTCNKPGHFASNCPQKSSKPKGKALCATLAVGTGSEDCWYFDSGATAHMTRSKDGFVKQVDWVHP
IDTASSHSIKSVAKGTVQLELDEGPIEVKEVLMVPELSANLLSISKICEKDMTVLFKAGGCEVRDENGDIVVTGIQQDGM
YKLITKKSPKAFLMTDMELWHRRLGHLNKQFMGKLTTLVDGLEIRITDMDDCVACAQGKHCRDSFHSSASRATDLLDLVH
SDVCGPIEVPSIGGSRYFVTFVDDASHKVFLYFIESKSQVKEVYEQFKAMVERQSGRKLKVLRTDNGTEYVNSSLEKIMQ
RDGVVHQTTCPYSPEQNGTAERMNRTLVEKARSMLNDAGLSKKFWAEAVSTAAYLVNRSFTRAVDGKTPEEAWSQKKPNL
KHLRVFGSRVMVHCPKQKRQKFDPKSVEGIFVGYGERSKGFRVFNPARNDVIVSRDVVFINEGRPITSTATEDRSQPVEF
MELHSWLDMEENQANDAGESDDVVLPGPSTEESPVPAVALPPQSERSAVEQQGLRRSGRERQPTGKYTDFVCLSSTSGSD
DLTEPIEAFPGQAQPGSTDDPISYAEVLQRSDRNRWLEAMREELEALDKNETWELTELPKGKKAIRNKWIFKTKYGSDGN
VDRFKARLVVKGCSQRYGIDYEEVYAPVVRYSTIRYLMALAVEHDLEIEQMDAVTAFLQGKLKDEEIYMDQPEGFVKDPS
KVCKLKKALYGLKQSSRIWNLQLDEALREFGLQRSEIDPCLYFKKEGGRMMFVTIYVDDFLLFTNDQALKKKLKAFLNSR
FKMKDLGEAKLCLGLRITRDRKNGKLWLDQKQYLKDVLERFSMANCNSVSTPADPSAKLDKTMCPSDPEEVREMQTVPYK
EAVGSLMYAAYATRPDIAFAVNTVSKFSNNPGRRHWEAVKRIIRYLKGTMDHRLQFSKQSNPDLTGYSDADWGGDAEERK
STTGYVFTKMGGAISWNSKRQDVVALSTCEAEYIALSRTAQEALWWQQLLKQLDDQQVVPIMCDNQSAICVAKNQGFNPK
TKHIAIRYHFVRDTLNRGEVTLDYVPTKQQPADGLTKPLTKQNHEQFKKMLGIVS
>SHACOP12_MT#LTR/Copia 149-4615  [Medicago truncatula]
MENPPFFDFATNPSNPYYLHPNENPSLVLVTPSLDNKNYQTWSRSMRVALISKNKLKFVDGTLNPPPVSDLLHEPWLRCN
NMVLSWLQRCISETIVKSIIWCDRASVVWKRLENRFAQGDIFRVADILEELAKFQQGNLDISSYFTQLTTLWEEIQNFRP
IRDCTCAIPCTCGVASDLKKYNEQDKVIKFLKGLNEQYAHVRSQIMLINPLPELDKTFSLVLQQERQTHIPVFGEIPVDQ
QSTVNQVQQTNSNKGFARGGSSSYRGRGKGSYNGTRGQNQGITRTCSHCGRHNHTIETCFLLHGYPPGYQNKGPKSANLA
VSEQKYTDAVQNQGSVSSPSLNSIHEQYNQILQLLQHSNLQASTSNTNATMPQPAVNSVISLPAAYTSTSTPIIGKKSTL
WVIDSGATDHITHCLQNFSSFYNIPPISMSLPNGNKIVTTIAGTISLSNSLILHNVYYIPDFNINLFSISQFLKTSNASF
LFSIDTCSIVQILNQRVIGTAKKFGGLYVLDSSLLNKSQNNGLVSASICNSVFPSLSSKSTDSANVWHYRLGHISDSIHK
CISIQFPIVKYTSTHSPCDICHYAKHKKTSFPHSLIHSTQIFDILHVDIWGPYATPSVSEFKYFLTLVDDFSRFTWVIFM
KCKGETRNHLMNFISFIDTQFHKKLKCLRSDNGLEFIMPSFYLSKGIIHQRSCVETPQQNGIVERKHQHILNVARALSFQ
SHIPTNFWHFSIQQAVHIINRIPTPLLQNKSPYECLHQQQPSLIHLKVFGCLAFASTIQSHRTKFDSRARKSVFLGYREG
TKGYLLYDLHSHEFFLSRNVIFHESSFPFSTLHERCSPDSSTPHVSVDNSHLSSYHEPIQSSVIPNSSFPLSQNLDNSDT
STTHNSTPPNATSSATAIPDQTTTDVPIRRSARPKTTPAYLKDYHCSLLTSSESQLLSDSGKSAYPLSSVLTYDHCTPSY
KKFCLTVSYNPEPKTYNQACKIECWKEAMKDELHALAATNTWSIVDLPPGKVPIGCKWVYKTKYHSDGSLERHKARLVAK
GYTQMEGVDYFDTFSPVAKMTTVRTLLSLAAIKGWFLEQLDVNNAFLHGDLNEEVYMVLPPGLKLQNSDSNDLKVCRLNK
SLYGLKQASRQWYAKLSAALVSLGYTPSVADSSLFTKLKGTNFTALLVYVDDIVLSGNDYAEIQHVKQFLDQKFRIKDLG
KLRFFLGLEIARSNKGISVNQRKYTLELLEDSGHMAVKPSSTPYDTSLKLHNSDSPPYHDEFSFRSLIGRLLYLTLTRPD
IAFAVQQLSQFVSKPREVHFQAATKILKYLKNSPAKGLFYSSSSPVKLAGFADSDWASCPSTRRSVSGFCVFLGSSLISW
KSKKQTTVSRSSSESEYRALASLTCELQWLSYLFKDLHINFQQPASVYCDNKSAIYLAHNPTFHERTKHIEIDCHVVRER
IQSGLIHLFPVPSSSQIADLLTKPLLSPAFNSLVSKLSLCDLHSPACGG
>STLV-3_gag#LTR/Delta gi|18071204|ref|NP_542256.1| gag polyprotein [Primate T-lymphotropic virus 3]
MGKTYSSPVNPIPKAPKGLAIHHWLNFLQAAYRLQPGPSEFDFHQLRKFLKLAIKTPVWLNPINYSVLAGLIPKNYPGRV
HEIVAILIQETPAREAPPSAPPADDPQKPPPYPEHAQVEPQCLPVLHPHGAPATHRPWQMKDLQAIKQEVSSSAPGSPQF
MQTVRLAVQQFDPTAKDLHDLLQYLCSSLVTSLHHQQLETLIAQAETQGITGYNPLAGPLRVQANNPNQQGLRREYQNLW
LSAFSALPGNTKDPTWAAILQGPEEPFCSFVERLNVALDNGLPEGTPKDPILRSLAYSNANKECQKLLQARGQTNSPLGE
MLRACQTWTPRDKNKILMIQPKKTPPPNQPCFRCGQAGHWSRDCKQPRPPPGPCPLCQDPAHWKRDCPQLKADTKGSEDL
LLDLPCEASHVREQKNSSGGED
>STLV-1_pol#LTR/Delta gi|9632567|ref|NP_049560.1| reverse transcriptase/envelope protein (deleted env region 730-1217)) [Simian T-lymphotropic virus 1]
MQLAHILQPIRQAFSQCTILQYMDDILLASPSHKDLQLLSEVTMASLISHGLPVSENKTQQTPGTIKFLGQIISPNHLTY
DAVPTVPIRSRWALPELQALLGEIQWVSKGTPTLRQPLHSLYCALQRHTDPRDQICLNPSQVQSLVQLRQALSQNCRSRL
VQTVPLLGLVMLTLTGTTTVVFQSKQQWPLVWLHAPLPHTSQCPWGQLLASAVLLLDKYTLQSYGLLCQTIHHNISTQTF
DQFIQTSDHPSVPILYHHSHRFKNLGAQTGELWNTFLKTAAPLAPVKALMPMFTLSPVIINAAPCLFSDGSTSRAAYILW
DKHILSQKSFPLPPPHKSAQRAELLGLLHGLSSAHSWRCLNIFLDSKYLYHYLRTLALGTFQGRSSQAPFQDPLPRLLSR
KVVYLHHVRSHTNLPDPITRLNALTDALLITPVLQLSPAELHSLTHCGQAALTLQGATTTEASNILRSCHACRKNNPQHQ
MPRGHIRRGLLPNHIWQGDITHFKYKNTLYRLHVWVDTFSGAISATQKKKETSSEAISSLLQAIAYLGKPNYINTDNGPA
YISQDFLDMCTPLAIRHTTHVPYNPTSSGLVERSNGILKTLLYKYFTDKPDLPMDNALSIALWTINHLNVLTHCHKTRWQ
LHHSPRLQPIPETRSLSNKQTHWYYFKLPGLNSRQWKGPQEALQEAAGPALIPVIASSAQWIPWRLLKRAACPRPVGAPP
IPKKKTTNT
>STLV-3_pro#LTR/Delta gi|18071205|ref|NP_542257.1| protease [Primate T-lymphotropic virus 3]
SLPCPGAKKLLRGGGLTSPRTILPLIPLSQQRQPILHVQVSFSNTSPVGVQALLDTGADITVLPAYLCPPDSNLQDTTVL
GAGGPSTSKFKILPRPVHIHLPFRKRPVTLTSCLIDTNDQWTILGRDALQQCQSSLYLADQPSSVLPVQTPKLIGLEHLP
PPPEVSQFPLNRSASRP
>DIRS-2_NV_pol#LTR/DIRS 730-3312 [Nematostella vectensis]
MAVKTADSLLKLSAKADKEFLAELGNLLTLSTDALTILGHASFELSQLRRDDIKPHLNKEYGDLCAASVPVTEWLFGDDL
QTKLTHIRAANKIGNTASVSTFNRPNSRFNNRPNNRNLFSPSTAGSGSAELAEQQRQVAIHPTRETAHGSTTKEVDSVDV
VLQSAKVSEFESLVPSLVEVYRLKAKHFLAGQLPFYINVWKTLTSDPEILETVAGQHIDFTTIPEQTNPPFQPTWHDSEA
ELIDTEVHNLVASGVIVETSHEQGEFISPIFLRPKSDGSQRMILNLKQLNKFVTYHHFKMDTISTAVDMMKPDCYMCSVD
FKSAYYSVAIAPEHQKFLKFSWRGKLYQYTCFPNGLAFCPRKFTKLLKPVYSILRQCGHLSVAYIDDSYLQADSYELCVE
NVIDTLTLFNKLGFVVHPEKSVLVPTQKLVFLGFILDSTSMTVSLTPDKATKLKETCQLLLLKKRPSIREVAKVLGLMTS
SFPGILYGPLHYRYLEMDKTQALKTNKGNFDSHMSLSPEAIEDLNWWICSVENECKPVRHGKIQLTMATDASKKGWGCTV
QDTPSGGNWTPSEAEYHINYLEIKAVFLALQAFSHIVSHKCVKIFVDNTTAVACINQMGTCHSREINALVIQIWTWCIEH
DTWITVAHIPGKENITADSESRKQRRETEWALDTDIYTATVAKLQIKPDIDLFASRLNFKCRVYISYQPDPGAYAVNAFH
TSWKNLCFYAFPPFSIIQKVLSKISEDQATGILVAPHWPTQPWWPFLASLLIEPPLILPRKKNTLYLPSSPELRHPLHKT
LQLLACPLSGNCTQVKAFQHQLPKLSSRDGGQEHRNSITHISNGGMFTVVNGRLIHFRHL
>DIRS1_gag#LTR/DIRS 492-1499 Dyctiostelium [Dictyostelium discoideum]
MSTTVNNNDASSSNTSASNSAESFDLRMKSMEDQINNLSLAFTRFMKEPMFSSNTNSRSQPSHDDSNTENEQSEDESSNN
VDVPTDYQLSDTLLGQYKHMVNNQGLLVEEECILKRDEISELNKVFNFPSNFQVNVAPFGTPEGITVSSNVKNNDTDLLS
VEKRINDSLKPLLLMSSMLSSDSSNVDVELISYLTQSAIVLAVNTQASLSRVRRNNIAKEIYGSEVLLPIKIKDTPKMFD
ETETERVRKLAKSIRKNNEAKQSLLKLNYHSKSNVKKLVNSSGNNTTGNSSNSKSSSGSNGRSNNFNGSPSNVASGSNNT
KSANGTNNRFQKNKK
>HTLV1_tax#LTR/Delta gi|9626458|ref|NP_057864.1| p40 [Human T-lymphotropic virus 1]
MAHFPGFGQSLLFGYPVYVFGDCVQGDWCPISGGLCSARLHRHALLATCPEHQITWDPIDGRVIGSALQFLIPRLPSFPT
QRTSKTLKVLTPPITHTTPNIPPSFLQAMRKYSPFRNGYMEPTLGQHLPTLSFPDPGLRPQNLYTLWGGSVVCMYLYQLS
PPITWPLLPHVIFCHPGQLGAFLTNVPYKRIEKLLYKISLTTGALIILPEDCLPTTLFQPARAPVTLTAWQNGLLPFHST
LTTPGLIWTFTDGTPMISGPCPKDGQPSLVLQSSSFIFHKFQTKAYHPSFLLSHGLIQYSSFHNLHLLFEEYTNIPISLL
FNEKEADDNDHEPQISPGGLEPLSEKHFRETEV
>TND1_gag#LTR/Copia 72-1445 [Nicotiana tabacum]
MLNAGIMSVGHSISLPPVFDGSNYAYWKERMRVFIRANNFRLWQIIKYGEQMTEQVGQAMVSEHNTKAINMLYRSLNQEI
CRKISHCKSAKEVWDKLEDFYENTPQEADSSCDEPNVRCYMADGEEEVSTYDSYSFEELQEAFNDLFYELKKVSKIAKEA
TAKSKAFEDENLFLKNDNDDLREKIKAMNEASSIDKCLTCLSCESLQLENAELRSTLETRSVDVPKVVKEIKKELPKKNK
RRSKNKNGVRNFTAPPRNNSRALNESRTNNFRPPRHYSRMYANKSRTNALRPPRHESRIFANKPRNSNFRQPRNNSRNET
RQPRNDTRFFNKSRINNFRPPRYNSRNWNNESRVNRFNSPRNNTRTFVDKSRMNHARPPRNDSRIFNTSRNDFRSPRMYL
AQPRHRHNPNVVCHYCNRVGHIAPVYFSKHRDLSFGYNHYLPNLKGPKMVWVPKTSS
>SHACOP23_MT#LTR/Copia 26-4372  [Medicago truncatula]
MAPRNNASTSNEQGAPAIDPSSPYYVHPSDGPTSVSITPLLTGSNYHSWARSMRRALGGKMKYDFVDGSIPVPTDPFDPT
FRAWTRCNMLVHSWIMNSVAESIGQSIVFMENAVDVWNDLKERFSQGDLVRVSELQQEIYALKQEHRTVTKFFSDLKILW
EELEMYMPIPTCTCRVRCSCEAMHTARYNHNLLYVIRFLTGLNEEFSVVKSQILLLDPLPSLNKIFSMVIQHERQIVPHV
SVNDDSKVLVNAAENRRSNFRNNKTGSKPGERVCTFCNKSNHTIDTCYRKHGVPPHLQKKGSNYAAHNVNAESSAPPALT
HEQYNTLVSLLQASSISKQSTAHASNQVNSFQSTDHPSVDDKGNISVISIFSSCVNNTTLGSWIIDSGASDHICGSSHWF
HSFHDISPIFIRLPNGNFAVAKQIGTIYFSQSFFLTNVLYVPNFSLNLVSVAKLCSDLPCLVSFTNSQCLVQDPQSLKTI
GSAELIEGLYHVVLPDKIRNVSAAPCNSAVIIPENALWHFRLGHLSSSRMTLLHSDFPFIVIDQKGVCDVCHLAKHKKLP
YQRSFNKAMKPFDLIHFDIWGPLAIKSVHGFSYFLTAVDNFSRYTWVTLMRSKAEVSQHVMNFVQLIETQHNTLVKTIRT
DNGPEFLISSFYSSKGIIHQKSCVESPQQNGRVERKHQHILNVARDLLFHSNLPKQFWCYAVSHAVFIINRVSSPLLDNK
SPYFLMHDKLPDLKILKVFGSLAYASTLHSHRTKLDPRGRKCVFLGFKSGMKGSILFDLNNKEIFVSRNTTHLEHILPYN
PISKPSNWKYHSHGRTLGDDIPIIHPPNDTISHNTKPPDSVPLSSTLEHNLTNSTIPEPESFTPVPRIPNQNPQPSPHQP
IRQRHPPSYLADYVCNASDGSTKSKSSGTPYPITSYHSFSQLSPSRQVFSSSITHCTEPKSFKEASQYDCWQIAMKSELD
ALDKNGTWILVDLPPHVKPIGSKWVYKVKHRADGSIERYKARLVAKGYNQIEGLDFFDTFSPVAKLTTVRTLLALASIHS
WHLHQLDVNNAFLHGELQEEVYMTIPEGVSCTKPNQVCKLLKSLYGLKQASRKWYEKLTSLLVKEGYQQSTSDYSLFTLK
NGHEFTALLIYVDDVILAGTSLDEFKRIKHILDCNFKIKDLGILKYFLGLEVAHSKIGITISQRKYCLDLLNDSGLLGSK
PAGSPLDPSIKLHQDDGKPYDDIAAYRRLIGRLLYLNTTRPDITFATQQLSQFLHAPTMTHYNAACRVVRYLKHNPGKGL
LFPRNSEVQILGYSDSDWAGCIDSRKSISGYCFFIGSSLISWRAKKQQTVSRSSSEAEYRALSTATCELQWLLHLFKDLH
VISTRQPVLYCDSQSALHIASNPVFHERTKHLEIDCHLVREKVQDGTLRLLPISSQEQLADFLTKALAPPKFNSFISKLG
MIDIYNASA
>Ty1#LTR/Copia 227-5227 [Saccharomyces cerevisiae]
MMTQNQANPSGWSFYGHPSMIPYTPYQMSPMYFPPGPQSQFPQYPSSVGTPLSTPSPESGNTFTDSSSADSDMTSTKKYV
RPPPMLTSPNDFPNWVKTYIKFLQNSNLGGIIPTVNGKPVRQITDDELTFLYNTFQIFAPSQFLPTWVKDILSVDYTDIM
KILSKSIEKMQSDTQEANDIVTLANLQYNGSTPADAFETKVTNIIDRLNNNGIHINNKVACQLIMRGLSGEYKFLRYTRH
RHLNMTVAELFLDIHAIYEEQQGSRNSKPNYRRNLSDEKNDSRSYTNTTKPKVIARNPQKTNNSKSKTARAHNVSTSNNS
PSTDNDSISKSTTEPIQLNNKHDLHLGQELTESTVNHTNHSDDELPGHLLLDSGASRTLIRSAHHIHSASSNPDINVVDA
QKRNIPINAIGDLQFHFQDNTKTSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTVLAPIVQYGDFYWVSKR
YLLPSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHR
HIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQAS
VLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNS
LASPKSKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVIL
QGKESRLDQFNYDALTFDEDLNRLTASYHSFIASNEIQESNDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPST
HTEDSKRVSKTNIRAPREVDPNISESNILPSKKRSSTPQISNIESTGSGGMHKLNVPLLAPMSQSNTHESSHASKSKDFR
HSDSYSENETNHTNVPISSTGGTNNKTVPQISDQETEKRIIHRSPSIDASPPENNSSHNIVPIKTPTTVSEQNTEESIIA
DLPLPDLPPESPTEFPDPFKELPPINSRQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRS
KKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFI
FNKKRDGTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLG
MNDKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRGWSCVFKNSQVTICLFVDDMVLFSKNLNSNKRIIDKLKMQ
YDTKIINLGESDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDY
KMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVIS
DASYGNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKST
ISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNKWIH
>Copia-27_Mad_sf3#LTR/Copia? 30-3155 Novel protein with PRP9(COG5188), Splicing factor 3a, subunit 3, domain (AA 445-624). To avoid masking proteins with this domain those AAs are partially masked [Malus x domestica]
MGKRSASVPVADVSKAVHDRRFSQQQIITQLQDFRDKVTMTNHQLTDLQHSLADLAILSARQEQFQQTCLEELRSLKTQP
TTLPQPTWSTSPPQPITTFHPSRTPFAAGTSSPSPTTPPFHSSSHPVCHFPTSRYLPQSSSGSVFHPFDSDPHSFHHYPP
PSPTHDPHFTHAYSTPPHSPTVSLQTTPHLPSQIPSSTPPQLRHHRVPPLPSTSPSLAAMATSSRTRASVTVESSRTTTR
SGHASTQIKRSLQPISSVAMKRKPKSEVFGYRRSKNSSNFSSSSVGSTLCSYCCTDGLVHTVLIHDVTSSRWKSGSQTNC
NGSRVMPPLGNPTHAIEDLFPKEDFIQIAHRVPRPKEPDKALCCQVPILYSPLQQARLHLAFIPHYMTFAMIVFNSYGSR
RNILAHDVFDKRQKRAIDQNYVPHIFFLIRTVPRAIALIWGFQTIFFTGTFGWVSLCFVDSFDLNELXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQTSGTVQRAVETTLGSPITLLTGTFARVSLCSMDIFFRMIGNA
PTWEFPGRGSMICSTIWNNFLTLMANGIFSTFMSGLTKVISTFTLSRHMIDTMTSVCLVLSDCSTCAIKFIPGNTLSVFP
TLYFLEYLFTNTFGSQLLHGRKMQHTAISIDNLVLLSRWFWTSIIIASMPIQGSVLSSNLFVVVLSQDHMIGRAVPGSLV
AVTTTTGHPMVAGTPTRADNAYAGIDAIADQIQLLMVIFYSLLHCIIHHDPTLELFRHSRDAKTLEAIEFGLYACSVQPT
KQLIKVVEDTCCLGPQIIQRPHGTKAYMYCDGLTTIVEKPRCGEHIRHVDCKVLLQLYCKLIIIPMATYLNAKSNLAFLA
PPFVTSVCGSYDFESYFPEYLRLFKALLALHFQWYHVFATVVSMSMVLTAPRALALLSNDSKSVFVKYSLDLYLLVLLRL
PW
>WIS4_TM_pol#LTR/Copia 1292-5268 via tfasty with BARE2_HV_1270-5237, 4 frameshifts and 3 stopcodons. [Triticum monococcum]
MAHANVALNFNAFLEKAKLKDDCSNYTDWVCNLRIILIAAKKAYVLEAPLGDAPIFPATQDVMNPWQSHSDDYSLVQCGM
LYSLEPGLQKCFEQHGAYEMFQELKMVFQTHAxVERYEVSDKFYSCKMEENSCVSEHILKMSGLHNRLSQLGVNLPDDAV
VDRILQSLPPSCKSFVMNFNMQGMEKTIPEVYSMLKSAEVEIKKEHEVLMVNKTTKFKKGKGKKNFKKDGKGVAAPGKQA
ARKKPKNGSKPETECFYCKGNGHWKRNCPKYLADKKAGNAKGICDVHVIDVYLTSARSSSWVFDTGAVAHICNSKQELRN
KRRLAKDEVTMRIGNGSKVDVIAVGTLPLRLPTGLVLNLNNCYLVPALSMNFVSGSRLMRDGYSFKSENNGCSIYMRDMF
YGHAPLVNGLFLFNLKRDATHVHNVNAKKCKVHNDSPTYLWHYRLGHIGVKRMKKLRADGLLESLDYESFDTCEPCLMGK
MTKTPFSGTIERATKLLEIIHTDVCGPMSIEARGGYRYVLTLTKDLSRYGYVYLMKLKSETFEEFKEFHSEVENQRDRKI
KFLRSDRGGEYLSHEFGTHLRKCGIVSQLTLPGTPRRNGVSERRNRTLLDMVRSMMSLTDLLLSFWGYALETAAFTLNRA
PSKSVETTLYELWFGKKPKLSFLKVWGCDPYVKKLQPEKLEPKSERCVFIGYPKDTIGYTFYLRSEGRIFFAKNGSFLEK
EFLSKEVTGRKVELDEVQPHEPESSIAQENVSVVPTPTREGVNNDDQGTSDQVATELRRSTRTRSAPEWYGKPVLEIMLL
DNGEPSNYEEAMAGPDSDKWLEAMKSEIGSMYEKEVWTLIDLPDDRRTIENKWIFKKKTDADGNVTIYKARLVAKGYRQV
QGVDYDETFSPIVKLKSVxIMLAIAAFYDYEIWQMDVKTAFLNGFLKEELYMMQLEGFIDPKNVDKVCKLQRSIYGLVQA
FRSWNIRFDEMIKAFGFTHTYGEACVYKKVSGSSVAFLILYVDDILLMGNDIEFLESIKAYFNKCFSMKDLGEAAYILCI
KIYRDRSRRLIGLSQSTYLDKILKKFNMDQSKKGFLPVLQGVRLSTAQCSSTAEDRENMSVIPYASAIGSIMYAMLCTKP
DVNLAVSFVGRYQSNPGMEHWTAVKNILKYLKRTKDMFLVYGGDEELVVKGYVDASFDTDLDDSKSQTGxVYILNGGAVS
WCSCKQSIVAGSTCEAEYMAASEAAHEAIWMKEFISDLGVIPNASGPMTLFCDNTGAIALAKEPRFHKKTRHIKLRFSSI
HENVQNGDIDICKVHTDLNVADPLTKPLPRAKHDQHQNSMGVRFITM
>Copia-95_AA#LTR/Copia 3-3449 via tfasty with Copia-11_CQ, 2 frameshifts. Internal deletion [Aedes aegypti]
FDNVKGALTVLSNEELCRKPIYDIKRMLLDAELASGAVQGPSGASSSIALKTEKKNEIECFGCGGVGHYKNRCPKKKKPT
KKRTGGHALMAGRRIERARAKRAANVRFVVDSGATEHMVNDERPLENVKELDEPAAISTAKSGQVLWATKSGKMRLTSII
GVNKMKPITLYNVLFIPGLDSNLLSVRKANEMGKKVVFVNDSVLFLNFGEVIARGTVVDGLYCMDFSHDSIVDPSALIGT
KQVSMEKLHERLGHLSFSGIERLLKNDMVEGINRSLSGEDTQKVCESCLAGKQSSKRFEHRELPRSSRPLEIIHSDVCGP
MEVKTYNGYRYFVTFTDDYTHFTLAYLMARKREVIEKFQEFEALVEGHFGRSISKLRCDNGGEYIGNEFKDFCKENGIQM
IFTVPYTPQQNGVSERINRTLMEKVRAMLHGSGMPKEMWGEALHCAAYITNRCPTNGLVENKTPFEMFFDKRPNLENLRI
FGCTAYAQIPKEKRQKLDSKTKRLVFVGYANNGYRLWNKETRSIESSRNVIFDEERLYEDQSDRLSNGDDLVSPEDLETV
QLIPVSRCKEDESVEKNAAMEETIHEQSNVSEENTLTEVSLESDYESTFEEQNSEDEPEMQQVRRSERERKVPARYTDYK
MAKIASSFSEVNPIPQTIEELKQRDDWEQWETALDSEMGSLKENQTWTIADGDVPEGVKPIQSKWVFKVKEDGRYKARLV
AKGCSQRPGFDYSETFSPVARMESVRTILSMANEMKLLIHQMDVKTAFLNGKLDEVIYMQLPKDEVGKGQTVLLQKSLYG
LKQASRSWNKRFDAAITNLGFTQLKCDSCVYKNKQKGLILILYVDDLLIVGANLDEIDWIKSELGKLFHMKDLSEVKHFL
GMDITRDMKTQTLKIAQSGYTARILRRFGMFDCKPVGTPLEANNKWTKNEGNETQHPYKELLGCLQYLAITTRPDICAAV
SALSKYQSRPSDAHWSGLKRILRYLRGTMDTCIVYQHQNNANVLIGYADADFANDEDNRKSISGYAFQVYGNLVAWATKK
QQTVSLSSCEAELIALSCAVKEGLWLTNLLKELDVDSIPLIIMEDNIPCIRYAEEPRSHQRMKHLDIKYMFIRDLIKKRE
LKLKLLASKEQPADAFTKGLPKSQQLRGS
>Copia-88_VV#LTR/Copia 235-4673 via tfasty with ATCopia28, 59.8% SW:3137, 3 frameshifts and 2 stopcodons. [Vitis vinifera]
MSNITKLEFVALDISGKNYLSWILDAEIHLDAMNLGAMIKEGNQASLQDRAKTLIFLRHHLHEGFFKKNKELLMKNHQSH
PTRFESFPEVNAISSQTRGRGRERGRGRGRNPRYHGSYSNNSQKMKASLHHQKWNNTKWNNTEAKQENGKRLQDKPPKNH
ENNCYRCGMKGHWSRTCRTPKHLVDLYQASIKAKGKEIEMNFTDGDGLDLTYYDIDFFGGPNEKTDHLINDEKINIDxCY
FIYEIIYYYVLYLHLIYFVIYISLFFFVISEIHVLFGLKMNEDDVCLADCATTHTILRDKRYFLELTLIKANVSTISGTT
NLVEGSGRANITLPNGTRFHINDALYSSKSRRNLLSFKDIRRNGYHIETMNEDNVEYLYITSIISGQKLIMEKLPAFSSG
LYHTTIKPIESYVVVNQKFNDPKVFVLWHDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACSQGKLIIRPSFT
KVISESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFPDYPIKTIRLDN
AGEFTSQTFIDYCMSVGINIEHPVAHTHTQNGLAESFIKRLQLIARPLLMKTKLPTSAWGHAIMHAAALVRIRPTTYHEY
SPSQLVLGKQPNISHLRIFGCAVYVPIAPTQRTKMGPQRRLGIYVGFDSPSIIRYLEPLTGDVFTARFADCHFNESVFPS
LGGEKSIPEERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKKVTKSHIPAANTPARIDVPVGQLT
NESKIRLKRGRPVGSKDVTPRKRRTQEKLGTLEEAIKMTDQFKIDKSIALEEAQIMQKAPEEAHIEQEAPEEAHDxTPHI
EREAPEEAQVPENCEISVSYVHTGEKWDRNNIVINNIFAFQVASDVIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNS
LTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRFLISLAVSEG
LDMRLMDVITTYLYGSMDNDIYMKIPEGFKLPEANSTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPIC
PCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRF
YMDKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGI
KHILRYLRGTTDMGLFYSRESKQQLLGYADAGYLSDPHKGRSQTGYVFNCNGTAISWRSVKQTMVATSSNHSEILAIHEA
SRECIWLRSMIQHIRESCGLSSIKGDPTILFEDNVACIAQITGGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDN
LADLFTKSLPTSTFKKLIHRIGMRQLKDIDMRGSMLVKGC
>Copia-95_BRa#LTR/Copia 104-4213  [Brassica rapa]
MADQAAAAPLDRVYGVTNIKTHVPFLLDIDDGNYDAWRELFRTHCLSFDVAGHLDGTVLPDNDADEAWTKRDGVVKLWIY
GTLSKDLFRSTFKTGGTAREIWVRLETFFRDNKEAWAVQLDHKLRSQEIGDLSIHAYCQELKSIADLMANVDAPVSERTM
VTYLLNGLNAKYDNIINVIMHRQPFPTFDQARSMLLLEEDRLGKGKKPSPHKDESSSSPKVLNVTTSQQEPKPSSHNQSR
NFGGRGNRGRNRGRGRNYNQQRPYYNQWNAPYWQAGYSMWPQQQYGPWMQSPQTANPQQGLLGPRPQQQYFVQGPHNNAA
NQKYEPTADFASAFNTMTLVDPTNVQWYMDSGATAHLTNTAGNLKSVFKHSIGNAVTVANGGKIPISSSGSHSFRTLSRP
LSLNSVLVTPSIIKNLISVRRFTKDNSCSVEFDPLGFSVKDLQTRRTILRSDSSGDLYPLLPFNNKATSPPLALLSASSN
IWHRRLAHPNEQTLNSLLSSSLLSCNKRDAFQLCSACQIAKHTKLPFTISTSTAKEPFEIIHSDLWTSPIQSLSGIKYYV
LFLDQYTHFLWVYPLRYKHETFSKFLHFFNYVNTQFGKTIKSLQCDNGGEFDNSSFHDFFAQKGLTFRFSCPHTSQQNGK
SERMIRTINNAVRSLLFQANLPSSFWVEALHTAVHTLNILPSKAIGNAIPFSVLFQKPVSYSHLKVFGCLCYPNINHSNL
SKLSPRSSKCIFIGYPQNHKGYRCFDLMSKKIILSRHVRFDENCFPYESPKRNKDAQYDFLDVDTNPSPIFKAILESPPA
TTTTQVATPPQPEAPTQPAQAAGEVPRHAMSTRSKHGISKRKHIFSLHTQTYSPLPTSYKKALADPNWNPSMNVEYDAIV
KSETFDLVPRPPNTNIVSSIWLYKHKFDAEGEFKSHKSRLVANGKSQEHGVDFEETFSPVVKPVTIRAVLHIALNSGWNV
NQLDVKNAFLHGTLDETVYMTQPPGFVDKTKPDHVCKLKRAIYGLKQAPRAWNARFVTFITNNGFIQSKSDASLFVYRKN
NQMAYLILYVDDILVTASTELLKNTIIAVLKREFPMTDLGRIQSFLGVSVKYNEKGILLSQSHYADEIIQRAGMSECKPC
ATPVDMKSKLAENDGKPISDPTEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPRESHFLALKRVIRYLQGTKTMGLQL
LKGQTMKLTAYTDADWAGCPSTRRSTSGYCLFLGDNLISWSAKRQPTVSRSSAEAEYKGVANAVAESCSLRNLLLEMGRP
LTQATIVYCDNVSAVYLSTNPVQHQRTKHIEIDIHFVREKVHMGTVRVLHIPSSLQYADIFTKGLPSSLFQNFRSSLGVT
ESTLRLREGI
>Copia-97_AA#LTR/Copia 118-4020 After removal of a c.150 bp Sola-like insertion. [Aedes aegypti]
MADAKVSVEKLNDQNYAIWKFKMRLLLTREKLLDVVIQPKPPAADATWVSNDEKAQAVIGLALEDAQLIHVMQKSTAKEM
WDALKDYHERSSLSSIIHVVRQLITLRMSDNGDMAEHLKQMTALRIRLSALGEDVKDNWFVALMLSSLPESYGGLIMALE
SRPDADLTVDFVKGKLLDEGRRRVENASLSEKALATGSWKKKPAEKPTVKKDKVCHYCKKEGHFRRDCRKLMQDRQEKEK
SQQANIVVKSESGGELCLAAGVTGDAAVWYLDSGATAHMTNNSSILEEVDVAKATTICLADGKSIKSAGSGSGRLISVNG
RGARMDVKLENVFHVPSLAGNLLSVSRIADLGFRVMFDKSECEVLKGEEVVLVGQRKGGLYHLKQLPEQAFLVDPKHGEL
CPHLWHRRFGHRDPQAVMKIVREDLGHGLKMGSCEVQSMCGCCCEGKMSRDSFPKASVTRSKVVGELIHVDLGGPMEVAT
PRGNRFYIALVDDYSRYSVVYPLQRKSDAEEKIREYCALLKTQFGRYPKCFRSDNGGEFAGASLMKFFSTNGIVVQRTAP
YSPQQNGVVERKNRYLVEMMRCMLSEAGLDKRFWAEAICTANYLQNRLPSSAIDRTPYELWSGKKPSYAHLRIFGSEAYV
HVPKEKRRKLDLKAEKLVFIGYEEGSKAYRFLNLETDRVTISRDAKFLELCTVKEAVRREPFATGGVLEVPLALPPEKVE
ETAEAPDLETDTESEVDDVNDSRYGSASEGDSSVHDFPLDENLRRSKRSTKGKPPSRLIEEIFVAESVSEEFEPGNLREA
LTCGKKKEWAAAMKDELKSHSDNDTWELVNLPPGRKAVGCRWVFKAKKNAAGEVTKYEARLVAQGYSQKYGEDFDEVFAP
VTRYTTLRALPALASSRKMTLKHFDVKTAYLYxDRDEELFTRQPPGYEVVGKEHMVCRLKRSIYGLKQSARCWNRRLDSV
LREMGFRPSAADPCLYTKVVNGKWVYLLVYVDDIMVGSEDESQIGAVYKALKKQFEMTDLGEVNYFLGLEIGHENGQYSV
SLENYIQKVAEKFGLREAKSAKSPMETGYIRMEDTSPLLSDTTAYRSLVGALLYIAACARPDVAACVAILGRKVSAPTEA
DWVAAKRVVRYLKTTKDWRLKFGSNDGLVGYCDADWAGDVGTRKSTTGFVFHYAGGAVSWVSRRQNCVTLSSMESEYVSL
SEACQELVWLLSLFKDLGVQQSGPVTIREDNQSCIKFVGSERSTRRSKHIETKQHYVKELYEDKVLSLEYCSTDEMVADI
LTKPLGTIKHRKLAGMLGLSA
>Copia-96_SB#LTR/Copia 32-4471 via tfasty with CPSC4B, 3 stopcodons. [Sorghum bicolor]
MSKSPPKKVLTGDGSGEKKEKKPSESPTRRRGRSYSRRRRSSRTRDAGSRVVERVIERPSANVSWPMLTRTNYPEWAMVM
EVNFQTLRVWDAVDIGTSDDPDDEEYHDDRQAMAALLRSVQADLWSTLARKATAKEAWDAIKVLRIGDERARDASAQQLR
REFGAISFKEGETVTEFGLHVTTLATNLRSLGDNITDAEVVKKLLQVVPDRLAQAAVSCEMFLDLNTVSIEEVVGRLRVF
EDRFTKHKAVTDDLGRLMLCEEDWEARRKARREQESSGGAGGSRSRGKRHERGRGRGGAGVTPRDGQNVGAGNAGGGRPT
PGDCCKNYGKTGHWAKDCRSKKKGAAHVAQAEEDDHALMYIAAETEVTAPTMSCCHPRSSASAAETQARVHLAEPKVLLH
LSEGQKEAAVPRRWVLDTGATNHMTGTRTVFAELNTGVTGTVKFGDGSVVEIEGKGTVLFACKSGEHRRLEGVYYIPRLT
TSIISIGQMDEDGFKVDIESGVLRMYDLQRKLLAKVYRSPSRLYLLDMNIVDPVCLTARVGDVAWRWHERYGHINFxALR
KLGQGDMVRGLPTIDHVDQVSEDCVLAKMKRTPFPRAAKFRAQEELELVHGDLCGPIAPPTPAGNVYFLLLVDDMSRFMW
LTLLRSKADAPAAIMTFQARVERETGKQLKVLRTDNGGEFTSVEFGEYCAGKCVQRHHSAPYSPQQNGVVERRNQTVVAT
ARSILRARSMPGHFWGEAVHTAVYLLNRAPTAALDGMTPYQAWYGKAPPVHHLKVFGCVAYVKNTRPHLTKLADRGLKVV
FIGYQDGAKAYRFYDPVAERVHVSRDATFDEGARxDWGGASVPSGDQPFTIEEYYDLRPHHGEAPGPETASPPSPSPSTS
HTAPTPASPVSRAASPTAPSPPPITPLGAGGRIEFATPLTTDPNLDADDDEEREHRYRTLDNILGSDAAPGPVRGVEEAE
LHSVSVEEPQSLKEADGDPNWAAAMEEEMKSIRENDTGSFSELPQGHRAIGLKWVYKVKRDENAAIVKYKARLVAKGYVQ
RAGVNFEEVFAPVARLESVRMLLAIAAHCGWSVHHMDVKSAFLNGDLQEEVYVQQPPGFIDDKHKNKVLRLHKALYGLRQ
APRAWNHKLNASLLALGFSRCVNEHGMYTRGRGDGRLIVGVYVDDLIISGGDAAAVTKFKTQMKNTFRMSDLGLLSYYLG
LEVTxGAHGITLQQSAYAVKILEKAGMTGCNPCATPMEERLKLLKEGSSPAVNATEYRSEIGSLRYLCNSRPDLAYAVGY
LSRFMEAPRQEHLAAVKRVLRYVAGTLNWGVHYHPGGKKQGPPEPLGYSDSDLAGDVNDRKSTSGLIFFLSGGPVAWQSA
KQRVVALSSCEAEYIAAAGAACEAVWLARLLAELTGGAVLAPKLKVDNKSAIALMKNPGHHDRSKHIDVKFHFIQECCDM
KLIDVEFVGTVMQLSDILTKALGRVRFQELRDGIGMKKII
>Copia-88_ST#LTR/Copia 119-4107 via tfasty with TTO1_NT, 86.2% SW:4439, 1 frameshift and 1 stopcodon. [Solanum tuberosum]
MEANTSRMVTLNGVNYAIWKGKMEDLLYVKNFYQPVFTTVKPDNKTDEEWNLLHRQVCGFIRQWVDDNVLNHISGETHAR
TLWEHLESLYARKTGNNKMFLIKQMLSLKYHDGSPMTDHLNNFQGIMNQLSAMGVKFDEEIQGLLLLGSLPDSWETFRTS
LSNSAPDGVISMDSAKSSVLNEEMRRKSQGSSSSDVLITGSRGRNKTRGSQNREQNRSKSRGRLKDIECYHCGMKGHTKK
FCRKLKRENKNKEETKEDGNENCLAAVATEDLVTVLDADMINIACDESSWVVDTGAASHVTSRKDFFSSYTPGDFGTLSM
GNETVSRVVGIGTICLETSVGTKLVLNNVKHAPDVRLHLISVGVLDDEGYVSTNGDGKWKLIKGSLVVARGNKRRGLYWT
TASACVDTVNAVESDNSSTLWHKRLSHISEKGLNVLAKKKLLSNFKSAKLEKCEHCLAGKQNRVSFKSYPPSRKTELLEL
VHSDLCGPMKTRTLGGALYFVTFIDDCSRKLWVYVLKTKDQVLGVFKQFQASVERETGKKLKCIRTDNGGEYCGPFDEYC
KHQGIRHQKTPPKTPQLNGLAERMNRTLMERVRCLLSEAKLPNSFWGEALLTAAHVINLSPAVALQSDAPNRVWYGKDVS
YDHLRVFGCKAFVHVPKDERSKLDAKTRQCIFVGYGLDEFGYRLYDPIEKKLVRSRDIIFMENQTIEDIDKAEKLESSSF
DGIVHLDEVPHTSTHDVVGLDDHGDAHNHVSNQHVDVDNNNDIVIDDPPAHEVVDESNIPLRRSTRQRVPSSRYSPNEYV
LLTDGGEPECYEEAMEDEHKDQWIEAMQDEMKSLHENHTYELVKLPKGMRALKNKWVFKVKVEEHNLKPRYKARLVVKGF
GQRKGIDFDEIFSPVVKMSSIRTVLGLAASLNLEIEQMDVKTAFLHGDLEEEIYMEQPEGFEVEGKENFVCKLRKSLYGL
KQAPRQWYKKFESVMGEQGYKKTSSDHCVFVQKFSDDDFIILLLYVDDMLIVGKNTSKIDELKKELRKSFAMKDLGHAKQ
ILGMRITRLRDERKIYLSQKKYIERVLERFNMKNAKPVSTPLAGHMKLSKKMCPTAREEKESMAKVPYSSVVGSLMYAMV
CTRPDIAHAVGVVSRFLDNPGKEHWEAVKWILRYLRGSSDECLCFGASDPILKGYTDADMAGDLDNRKSTTGYLFTFSGG
AISWQSKLQKCVALSTTEAEYIAATEAGKEMIWLKRFLQELGLHQMEYIVYCDSQSAIDLSKNSMYHARTKHIDVRYHWI
REEVESESFHVKKIHTSENPADMLTKTIPKDKFELCKELVGMSSLxRRWR
>Copia-84_ST#LTR/Copia 3-4439 via tfasty with Copia-11_Pru, 83.9% SW:5095, 2 frameshifts and 2 stopcodons. [Solanum tuberosum]
MVSELDQSKSPNTSNKSNDMNSSNPYFLQHSDHPNLMLVPIKLNGINYPSWSKSMIHALTAKNKLSFIDGSIEPPSEIDK
PTEYALWNQCNSMILSWLAHSVEPDLAKGVIHAKTAHQVWQDLKDQFSQKNAPAIYQIQKSLASLSQGNMNISSYFTKLK
GLWDELDTFRTFPTCNQIKAHTDQIEEDRVMQFLMGLNDIYNVVRSNILMMSPLPNVRQAYSLVIQEETQRQMTSESTES
FSIAAAVQRRTNSFFNKSRNKHCEHCNREGHTIENCRTLKFHCKHCNRKGHTEDRCKFKNGTWSPNNSGSQNNRQQRGSQ
GNPSHVANVIDTHQSKNEIHSQDSNGSHGFSAEQLQQIAQAVSLFTQKNNSAGNSDAYANAAGLSLFHNVSINSAFTRPW
ILDSGATDHITSDSTFFTQTKSPSIPIVNLPNGSPVSIHSTGTIPFNSDITLNNVLHVPSFRLNLMSVSKLTNDLNCCAL
MFPTFFVLQDLATGKMIGSGKHHAGLYYMSSVQKPPISHxVSQPKDLWHMRLGHPSPSRLRLIAPLLPFRNVSFDNNCDV
CPLAKQTRLAFPLSNISTHSPFDLLHCDVWGPHRVPTDSGARFFLTIVDDFTRCTWLFFMKYKSETSHILQSFISFTKNQ
FHASIKKIRTDNGKEFEPMKSFFHSHGIKYQRTCVFTPQQNGVVERKHRHILNVAPALRFQAHLPITFWGECVLTAVYII
NRLPTPLLHSKSPYELLYHKPPSLSHLKVFGCxCYATVVKHKQKFDSRAKRSIFVGYPTGQKGYKLYDLETKRFFVSRDI
KFSETIFPFSSVTPTSTSFSPQSSSSIFDNWSSPSSVIKDVSSPQPQSIRRVESHEPRIIEASLENITDDNLANPNQLVQ
NPTSDETLESIPVISEVVVPSSPLLRQSARLKKTSEWHKDYILPAQANQSSAMPSPTSGTRYPLSHYLSYSRISSAHCIF
LANITSHTKPSSYAQVVLDPHWRQAMNAELEALKDNKTWSLVPLPVGQKPIECKWVYKIKYKSDGTIERYKARLVAKGYT
QIEGVDYQETFSPTTKLTTFRCLLAVLSARNWFASQLDVQNAFLHGALHEEVYMEPPPGLRRQGENTVCRLHKSLYGLKQ
SSRNWFLTFSEAIRKAGFQQSKADYSFFTKAKGSSFTAILIYVDDILLTGNDLQEIERIKRFLLKRFRIKDLGELKYFLG
IEFSRSKKGIFMSQRKYAIDILQDSGILGARPEKFPMEQNLKLTSTDGIILNDPTKYRRLVGRLIYLTVTRPDIVYSVRT
LSQFMQEPRKSHWDAAVRILKYIKGTPGQGLLFPSTNNLILKAFCDSDWGSCRATRRSVTGYCIFLGNSLISWKSKKQLV
VSRSSAEAEYRAMANTCLELTWLSYILQDLRISNVTPAKLFCDNQAALHIAANPVFHERTKHIDLDCHIVREKLQAKLIS
PSYVPTHFQLADIFTKALGKDQFVTLRNKLGVHDIHSPT
>Copia-83_PT#LTR/Copia 52-4077  [Populus trichocarpa]
MEKEDSGMIKLTSSNYFLWKTMMEDHLYCNDLALPLECKGIKPDEMDEAKWNGLNRKATANVRKWVSSKSINHISQEHDC
YTVWKMLEETFAKKSAQNKVFVIRDLVNLKYKDGEDASVHINEFQGFLNQLSLMNLELADEMQALILSSSLPDSWETLVV
SLSNSTPNGKITLKKVKDSILNEEKRRKGTSTYESHALVTESRGRSQSRFSHGKQDRESGDRKGKWKPRGRSQSRKGIKC
YYCDKPGHIQKDCRKYKRDKKGKDEDKNEENGTTAVVFDGDVAIVCDDGCVNLACQDTTWVADSAASYHVTPRRDFYTSY
TAGDFGQVRMGNQGMASVVGIGDIWLETNTGCKLLLKDVRHVPDMRLHLISTGTLDEEGYHNYFGDGKWKLSKNSLIVAK
GKKMGLYMSQAKVIKGEVNAIEDCSTDLWHKRLGHLSEKGLGILAKKNYLPLKGMNLNTCTHCLVGKQHRVAFQRSPSHR
RSHVLDLVHTDVCSMIDKSLGGALYFVSFIDDHSRKIWATCLKSKDQVLDVFKDFHARVERETGRKLKCVRADNGGEYRG
PFEKYCREHGIKLEKTVPKTPQQNGVAERMNRTIVERIRCMLSHAKLPKSFWGEAMKTAVAMINLSPSVPLEFDVPDRVW
KGKDVSYAYLRVFGCRAFVHVPRDERSKLDSKTKQCIFLGSEDDEFGYRLWDPKEKKIVRSRDVIFFEDQTIEDFEQKEK
TESTTFIPSNSNPRPTPQLPLMPANHGGDLQNDDNGGFLIEPLVGDPESANDDIDVIPEQVIQEAPDEPQLRRSTRPRQP
STKYSPHEYVLVTDGGEPECFDEAMSHEKKSEWLKAMQEEMKSLHENHTFELVKLPKGKRALKNKWVFRLKIDEHCSQPR
YKARLVVKGFGQKKGIDFEEIFSPVVKMSSIRVVLGLAASLNLEVEQLDVKTAFLHGDLDEEIYMEQPEGFEAKGKEQLV
CKLKKSLYGLKQAPRQWYKKFDSFMVDHGYDRTTSDHCVFMKRFPDGNFIILLLYVDDMLIVGHDAKKIQXLKEELSKSF
AMKDLGPTKQILGMKITRDRKXEKLWLSQERYVQKVLERFNMSNSKPVCSPLASHFKLSSKQCPSSDEERDEMKKVPYAS
AVGSLMYVMVCTRPDIAHAVGVVSRFLSNPGKEHWSAVKWILRYLKGTSSFSLCFGNDKPVLDGYTDADMAGDVDSRKST
SGYLMKFAGGAVSWQSRLQKCVALSTTEAEYIALTEGGKELLWMKKFLHELGLVQENFVLHCDSQSAIHLSKHPTFHSRS
KHIEVRYQWIRDAMEMKSFVVEKIHTDDNVSDMMTKPLPREKFEFCRREAGLVEPPKLKLTC
>Copia-85_Mad#LTR/Copia 140-4316 via tfasty with Copia-64_Mad, 2 frameshifts. [Malus x domestica]
MAGSGSAEVRTPIFSGENYEFWRIKMVTIFKSHGLWNLVEKGIPVPDSKKKKAKTDEDTELTADDDEKMAAIFMKDAKAL
GIIQSAVSDQIFPRIANADSAKMAWDLLYGEYHGGDQVRSVKLQNLRREFEYARMRDDESLTGYLTRLNDLINQMKTFGE
TLSNERLVQKVLISLTKIYDPICLVIENTKCLESVELQEVLAILKSQEQRFDLHSSDATERAFSSLTVSSKGQNRSYAQS
STFKPQRNWNQKGKKWDSKPKFQQKSFANVAQNSTSSQVMGQESVKPQCKVCSKFHYGECRYKGKSKCYNCDRFGHWARE
CTVGKSVQKANCASQMEVTGNLFYANCAVAETKVNGDWYIDSGCSNHMTGNVDLLVDVNTNVAGKVQMPTGVLVNVAGMG
SLEIETNRGRKYIREVMYLPGLKENLLSVGQMDEHGYYLVFGGSMCTVFDGPSLECQIISVKMKGNRCYPLSLRPEKQLV
LKTSFAHCSRTWHRRLGHLNFGGIKQLKDKDMVHGLPYLEEYDRVCEGCQYGKQHRESFPSGQAQRAGAPLELVHVDLCG
PMRNESTGGNKYFMLLVDDATRMIWVYFLRYKSEAFSCFKKFKAMTELQTGLRVKCLRSDRGGEFLSTEFNQFCDTEGIQ
RQLSLAYTPQQNGVVERKNRTVVEMAKSMLHDKGMPYYMWAEAVHTAVYILNRCPTKSLDNITPFEAYSGRKPGIAHLKV
FGSVCYVHTPSELRHKLEAKSIKGVFVGYAKCEKGYRVFDPISKRLILSRDVVFDEDSSWDWQGSTEKHVSMPNYEWQSV
ETPRSEFTEDETQVSNTLSPGSLRETASGTDDAQITPQAQSSESSSRSCEGARDSQAFDHTPLKWRKLDDVLAQCNLCIM
EPEKYEDASKDESWMKAMKDELSMIEKNATWELVDRPSNKPIIGVKWVFKTKLNLDGTVQKNKARLVAKGYAQKPGIDYN
ETFAPVARLDTIRTLIALAAQKSWKLYQLDVKSAFLNGVLEEEVYVEQPDGFVAKGEEDRVYKLHKALYGLKQAPRAWYG
EIDTYFSQCGFTRSLSEPTLYIKAGEEDILIVSIYVDDIIYTGSNNQMLEEFKEDMKRKYEMTDLGLLHHFLGMGIIQTN
SSIFIHQKKYAGSLLDKFGLKECKSVLTPLVATEKLTTDDGSGAASEELYRSIVGSLLYLTATRPDIMYASSLLARFMHC
PTSKHVGTAKRVLRYIKGTLDYGLEYVKGKNSMLIGFCDSDWGGSIEDSKSTSGYAFSFGSGVFSWASVKQNCVALSTAE
AEYISASEATAQAIWLRFVLEDFGEFQTEATPVHCDNTSAIAITKNPVFHQKTKHIDRRYHFIKDALKDGIIDLVYCPTN
EQLADIFTKPLPKDRFNYLRSMLGVKSAQDLKG
>Copia-88_BRa#LTR/Copia 97-4435 via tfasty with ATCopia15, 87.7% SW:5252, 1 frameshift and 1 stopcodon. [Brassica rapa]
MVSVKKIPRKSTRVTRKPIRSTDVDDSPPPSPPVAQPRNTGAPRMVIPPESMDPNQSPLFMHNADHPGLQLISLKLDGSN
YDDWNAAMKIALDAKNKIGFVDGTLTRPDTSDPTFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDAADIWRDLHGRFHM
TNLPMTFNLTQEIQDLKQGSMSLSDYYTTLKTLWDNLESVDEPDTPCVCGKQKKADRAKIVKFLAGLNDSYAIIRRQIIM
KKVLPSLVEVYNILDQDDSQKGFSTAITPAAFNVSENVPPPMAEAGICYVQTGPNKGRPICSFCNRVGHIAERCYKKHGF
PPGFVSKYKSQSSGDRLQKPKQVAAQVSFNPPNSGQSPMTMDHLVGNLSKEQLQQFIALFSSQLPNVTMGSNEASSSKQP
MDNSGISFNPTTLVFIGLLTVSRHTLANETWIIDSGATHHVCHDRSMYTSIDITTTSNVNLPNGMIVKISGVGIVQLNEH
ITLHNVLYILEFRLNLLSISSLTSDIGSRVIFDVSSCAIQDPTKGWTIGQGRRVANLYVLDVKSSPMKINAVVDISLWHK
RLGHPSYTRLDKISEALGTTKHKNKGDAHCHVCHLAKQKKLSYSSQNHICTASFQLLHVDVWGPFSVGTLEGYKYFLTIV
DDHSRATWIYLLQSKSDVLHIFPTFVNQIETQYNTKIKSVRRDNAPELSFTELFKEKGIVSYHSCPETPEQNSVVERKHQ
HLLNVARALMFQSQVPLQYWGDCVLTAVFLINRTPSPLLANKSPYEVLMGKAPQYDQLRTFGCLCYGSTSPKQRHKFMPR
SRACVFLGYPSGYKGYKLLDLESNKIYISRNVTFHEDIFPMAKHQKMDESSLHFFPPKVTVPSAPSPNISSSPFSTLSPQ
ISKRQRTVPAHLKDFHCYFVHDSAYPISSTLSYSQISSHHLAYINSITNIPIPQSYAEVRRSKEWTESADKELDAMEEND
TWDVVPLPKGKKAIGCRWVHTLKFNADGTLERRKSRLVGKGYTQKEGLDYTETFSPVAKMATVKLLLKVAASKKWFLHQL
DISNAFLNGELDEEIYMKLPEGYAERKGDLPPNAVCKLKKSIYGLKQASRQWFKKFSTSLFQLGFQKAHGDHTLFVRQNE
NDFVAVLVYVDDIVIASTDDAVAVKLKSDLKSFFKLRDLGSLKYFLGLEISRTSDGISLCQRKYALELLTSTGMLDCKPS
SVPMTPNLKLSKVDGDLIEDREMYRRLVGRLMYLTITRPDITFAVNKLCQFSSAPRTSHLGAVYKVLQYIKGTVGxGLFY
SAHSDLTLKGFADADWAACVDSRRSTTGFTMFVGDSLISWRSKKQPTVFRSSAEAEYRALALASCEMMWLCILLRELRVA
SSSVPVLFSDSTAAIYIATNPVFHERTKHIELDCHTVREKIDKGLLKTLHVRTEDQVADILTKPLFPYQFEHLKSKMCIR
NIFCTS
>Copia-87_ST#LTR/Copia 44-4063 via tfasty with TTO1_NT, 86.4% SW:4676, 2 frameshifts and 1 stopcodon. [Solanum tuberosum]
MMESNMSKMVCLNGSNYHTWKGKMKDLLFVKKMHLPVFASNKPESMNDEDWEFEHLQVCGYIRQWVEDNVRNHIVNETHA
RSLWDKLETLYASKTGNNKLFHLKQLMNIRYKEGTPISDHINDFQGVLDQLSGMGVKFDEEIQGLWLLNTLPDSFETLRV
SLTNSAPSGVVTMEYAKSGVLNEEMRRRSQGSSSSTSHSDVLVTEDRGRSKFRGQNDRDKSRGKSKSRFKNVTCDYCHKN
GHIKKYCFKYKRDMKQQKKEGDNENRVVVVANDDLLVSCDENVVNLVCDESSWFVDSGATSHVTPRKELFSSYTPGNFGM
LKMGNNHEVAVLGIGTVCLESNNGSKLVLNNVKHAPDVRLNLISVGYLDDEGYVNTLGAGQWKLTRGSMVVARGDKLSNL
YVFQGSIFRGSVNLVENDTSSLLWHRRLSHMSEKGMDNLAKKNLLSGVKQAKLNKCVHCLAGKQKRVSFQSHPPSRKLDL
LELVHSDLCGPFKVKSHGGALYFVTFIDDHSRKLWVFSLKSKDQVLDVFKNFQALVERQTGKKLKCIRSDNGGEYIGPFD
RYCREQGIRHQKTPPKTPQLNGLAERMNRTLVERVRCMLSDAKLPDSFWAEALNTAAYVINLSPTVALNGDVPDRVWSGK
NVSYDHLKVFGCKAFVHVPKDERSKLDVKTRQCIFVGYGQDEFGYRFFDPVEKKLVRSRDVVFFEDQTIEDLDKAEKVDS
QSSESLVDVDPVPLTIPPGENLQNDENQVDIEDGDHIQNDQYAVDAPVQDDVVGQQPTIIDAPESSLRRSTREKIPSSRY
SPNEYVLLTDGGEPESLDEAMESEEKEMWFDAMEDEMKSLHDNHTFDLVMLPKDRKALKNRWVFRVKHEDGNPVPRYKAR
LVVKGFNQKKGIDFDEIFSPVVKMSSIRVVLGLAASLDLEVEQMDVKTAFLHGDLDEEIYMEQPEGFEVKGKENYVCKLK
KSLYGLKQAPRQWYMKFGSFMSQQGFKKTSSDHCVFVQKFSDGDFIIVLLYVDDMLVVGHNACRIKKLKQELNKSFAMKD
LGPARQILGMQIVRDRDAKKLWLSQEKYIQKVLRRFNMDKAKVVSTPLAMHFKLSTRHCPSSDGEKEDMKKVPYASAVGS
LMYAMVCTRPDIAHVVGIVSRFLSNPGREHWNVVKWIMRYLCGTSSLSLCFGTGKPILCGYTDSDMAGDVDTRKSTSGYL
ITFAGGAVSWQSRLQKCVALSTTEAELIAAVEACKELIWMKRFLGELGCAQERYVLYCDSQSAIHLGKNSTFHGRSKHID
VRYHWIRDVLDSKLLELEKIHTNDNGSDMMTKALPRGKFEECCMIAGMASPPHSRxGENC
>Copia-98_BRa#LTR/Copia 74-4443 via tfasty with Copia-21_EPa, 86.9% SW:5311, 3 frameshifts. [Brassica rapa]
MSDDRELAQANPKKDEVVSVSPYTLYAADNPGAVISSVRLNGENYNEWSSEMLNAFQAKRKLGFIKGTLVKPAETSPDLE
NWLTVNSMLVGWIRASIEPKVKSTVTYITDAHQLWENLKQRFSVENTVRVHQIKVQLVSCKQDGQSVLDYFGRLSTLWEE
LQMYQPVHTCTCGAAAAIAGEREQEKIHQFVMGLDDSRFGGICTSIIGQDPLPSLGKIYSKIIREEQRLASARGRDQQEA
VGFVARQTQSDEVSRKGQQLSSTETQSRTENTILKPRLLCSHCGRTGHEKRDCYQIVGFPEWFPERGAGRGQGSGGRGRG
GRSGGRGRGRACAAHATSSNSSEFPDFTSDQWKIRTQMIQEKSGANAADRLSGKSKLGDVILDTGASHHMTGLLSLLTNV
EPISPCSVAFADGGKTYAMSWGSLALSSKITLSRVLYVPDLNCTLISVAKLLKQASCFAMFTDTVCVLQDRFSRTLIGTG
EERDGVYYFTDRVSAKSHRVSGISDQALWHRRLGHPSFSVFKDLALFSGSSNLAGSSPCDICFRAKQTREVFNDSSNKTS
ECFSLIHVDVWGPYRVPSSCGAVYFLTIVDDFSRAVWTYLLLEKSEVKVVLKQFLAYTEKQFGKSVKTVRSDNGTEFMVL
SSYFKENGIVHQTSCVATPQQNGRVERKHRHILNVSRALMFQANLPIKFWGEAVLTAAYLINRTPTSVLKGRTPYEVLYG
VQPDYKLLKVFGSACYTHKMNRDKDKFGQRSRSCIFVGYPFGKKGWKVYDVERNEFLVSRDVVFREDVFPFAESKLDQPA
VPSSDVILDEDWVVGLDNRGSSQVSPAVDTDEQNVASVEATETETELPLPEAELVENLGSPLASETSENLGRGHREKTQS
VLLKDFLLYSAAAASTPNTHHALPNSNMLSSSNDPGIPLYPLSDCITDEQFSPGHRAYMTAITSAQEPKHFQEAVRSKIW
NNSMTVEVVALEDSHTWDITDLPPGKAALDSLWVYKIKYNSDGTIKRHKSRLVVKGNKQVAGADYNESFAPVVKMTTIRT
LLRLAAAKKWEVYQMDVQNAFLHGDLEEEVYMKLPPGFRHTHPGKVCRLRKSLYGLKQAPRCWFKKLSDALLKFGFVQSY
EDYSLFSYSCKDIEIRVLIYVDDLLICGNNLHMVKRFKDYLGKCFAMTDLGKLKYFLGIEVLRGPEGIFLCQRKYALDIV
TETGNLGCTPAHTPLEQNHQLAKAEGPTLADPTKYRRLVGRLIYLLNTRPELCYSVHILSQFMKHPKEAHWLAALRVVRF
LKGTLGLGILLQSDPDLTLSVYCDADWSSCPLTRRSLSAFVVMLGGSPIAWKTKKQRAVSHSSAEAEYRSMATVLRETKW
IRKLLKELVLEQFTPTRFFCDSKAAIHIAANPVFHERTKHIENDCHSVRDAVQERIIVTQHIRTDSQIADILTKALGRVP
FQKLVSKLGIQDSPAPT
>Copia-110_AA#LTR/Copia 86-4225 via tfasty with Copia-36_CQ, 8 frameshifts. [Aedes aegypti]
MARXGGGXSAXRRDAVXGRXHSIHGSASLPSIELLHGRDNWSTWRFAVQTFLELEDLWEAVKPAQNPDGTFLQVVDASKD
RRARAKIILLLDPVNYVHVREAKTARDTWSRLEAAFEDSGLTRKVGLLRKLITTSLATSNSMETFVNDIIATAHQLRGIG
FEITDEWIGTLLLAGLPEEYRPMIMALENSGAAITGDVIKTKLLQEIRVCQTSSGAAFAGNRHGRKPIKQSEKPNPSASK
GPKCRSCKKFGHIARECPTRGAEERDGNAWCTVMSAVEEDDKDWYFDSGASSHFTKSEQTLEEFRKCGGKVIAANRGAMK
IVAKGSVKLKPACCPNDPAITVDEVQVIPDFSSNLLSVSQIVKRGHTVNVQRGWRPSHQPGGQVIATGTMDSDLFKLDHL
VQSRRALACSASDEPAALWHRRIGHINDSLHRMKRGLVSGIEYAEPPRSSDKCKVCSMGKQTRYRLASPVQERSEVLELV
HSDIGGPMEVPSLGGSRYYLTFTDDKSRRIFVYFLEDKSAQNVYEAFENFRCMAERQTGKKLKTIRTDNGKEFANRKLED
HLRRLGIRHQTTADYTPEQNGLAERVNRTIVERARCMLFEANLPKAFWAEATATAVYLINRSPTKGHSATPEEVWSGRKP
NLAHVRVFGSKVMAHVPKPKRKKWDAKAFECILTGFDEDTKAYRLWDPKSKKIIKSRDVTFVSEAREKPSSSNSMQVAAP
ERKVVRLDLGDPFPVHEDPEPVRTEAIDVEDGIVPVEEHQSSSEDEEFLDPIRDVTNSALPPRSSSNPPESQALRRSGRE
RYLPGKLKDFFFPSRGLSSDRFSDNQPESDVYVDAGSAIDLPGPAASDRQQGLAARRQPSTDGDPRTPSEALRGPEAKLW
KQAMDDEYRAQIENNTWELVELPPGRKAIGCKWIFKTKEDERGNVVRHKARLVAQGFNQKYGVDFDEVFAPVAKQVTLRT
LLTVASRRQMFVKHVDVKTAYLHGKLDETIYMRQPEGYSTGGPNAVCLLKRSIYGLKQSARVWNQSIDAVLRQMGFNPSS
ADPCLYVRRKGNSYTYVLLYVDDMLVVCRTEEEFKAIHQALRQHFNVTALGDVKHFLGIEIERDGNGFQLNQERYILKLA
ERFGLENAKPSKIPLDPGYLQQKEEEHELRLPNNTQYLSLIGGLLYVAVNTRPDIAVSVSILAQKSSCPTQLDWHEAKRV
LRYLKSTSNHKLILGSTADGLEMYADADWAGNHRDRKSNSGFLIRLGGGVVSWASRKQTCVALSSTEAELVALTEACQEL
SWLKKLMIDLGVNVSSPVTTFEDNQSCIRLVENGKIEKRSKHIATKYFFVRDLQEQQQIILKYCPTEFMLADILTKPLQH
LRLKTLRDKLGVLNYIVEEE
>Copia-106_AA#LTR/Copia 43-4194 via tfasty with Copia-29_CQ, 3 frameshifts. [Aedes aegypti]
MSEEKLWLFDGTNFGNWKFRIEVLLEDRNMLECLTKAIDEEEYSKDLATDTAEVRAEKKKKLEARWALDRKCKNLIINRI
AEDQLEYVKEKRTAKDVWDALRNNFEQIGIAGKLILRKQFQELKLSEGGDVKQYLLKFEKVLRELRAAGVNIQEEDVVCQ
LLLALPKSYDALITALETIQPQQLTLEYVKKRLLDEQAKRANQSSRGGDFGQASDSAFVGKKMGLKCFGCGKLGHKRAEC
PENCPPNESGHQGNRKSGGKVNRKQKYRANVAEESEVAFVATATGDCLSASTATEDVKIDWVLDSGATDHMLRSKEFFEE
LHPLAEKVRIAVAKCGQALYGEYAGTVRVNMLIGERRQPAVVKDVLYVPGLQCNLFSVRRVEDNGMAVKISNGSVMISKG
ERVMATGRRAGQLYKMNIELRGSAGASSEPGAMAAKQDCFDLWHRRLGHLGEASMKTLWKHGMVETSTKVLDWPNQCICE
VCIQAKQTRNPFDDVAERRATRPLEVIHSDVCGPFTPRTWDNKRYFLTFIDGYSHFTVVYLLHSKDEVQEKFEEYYARVT
AFFGTRVARLRCDNGGEYLGGSFQKFCRSKGISIETTVPYSPQQNGVAERMNRTLLEKSRAMIQDAGLPKSMWGEAVLTA
AYVTNRSPTAALKEKKTPFEAWYRKKPNIDKMRVFGSVAHTWIPKEKRTKLDPRSEKNILVGYTTNGYRIWNAKKKKIFI
SRDVVFDEKRSGSEQEKPVTQVLYRSYAESEVSEDRSVKELDMTEPTDAIANQPEEKLTDEEGSEVTDDDGEGNHDDDEI
DSALPSQPERDNCPAEVITRRSERERRLPGKLLDFITGSRATTAAECFSGVSDGFGESTMAFALNAEMFVDNLPTTIDGL
RRRDDWNDWKQAIGSELESLRKNETWELVPRPQGKNIVDCRWVFRIKRDEAGNVDRYKARLVAKGYSQRKGFDYDETYAP
VAKGATVRALLAVANQMRYHIHQMDVKTAFLNGKLTEEIFMRQPEGLEPTDPGLVCRLKKSLYGLKQAPRSWNSEFHNFI
LQLGFQRSNADSCLYWRRQGNEVVYLLLYVDDIILVSGRLDLIAEIKKKLSSTEFEMTDIGEMKTFLGLKIDRDRRKGLL
KISQPKYIADLLRRFGMNDCKPTTTPLEPNLKLERCKGESLTTEPYRELIGCLSYLALSSRPDICAAVNFFSKFQSAPTD
AHWSNLKRILRYLKGTANHGLVFQRQQASKPLEGYADADWGNDPDDRRSISGNVFQVFGGTVSWMTRKQATVALSSTEAE
YVSLSNAACEAIWLRNLILELGVELQHPVPLFEDNQSCICIAEEPRDHKRMKHVDIRYNFIREKLQEGLFKIHYIPTGQQ
VADLFTKGLARGPFETLRDKLGLFG
>Copia-111_AA#LTR/Copia 39-4666 via tfasty with Copia-11_CQ, 1 frameshift and 1 stopcodon. [Aedes aegypti]
MDQDESAVVSSRNESAVVSSRKKSATGSNRYESAVGRDRDELAVGSSRNESAPGRGRGESAVGRARNESAVGSSRNESAV
DSSRNELSRSKNESGSSQDRGAVGSSRGRATGAIPKHGGRSRSEDGATSANHSRERAAGVSRGESGHTATNRGRDNAAGE
SRSYIRNDAAGRGINRTVSQNRSRDQDGGVHGWDRRDETPGRNRFGRLHDDDRNLGAAGGDWYDEEEGQYDAESSSRQYG
RVRTENIPSIRVTASDGLRTAEATNGMDNLLVPNAKTVMLIERRSQMVGVFEGDEREFTPWKWRLMHHLSRLKLDYTVLR
TPRQEPYGQPDPNATPAEEARRQALYQKRCEDDCEAIDEIIFTIGNKPLQKLMHCQYAKECMDALSNAYQRGGTLVAMSL
RRQLFRLGDRQFHSLEELFKEHSRLCMELEYADPQGTHLEKIQTLLGAVPHRLNHAVAAILMLPEPVLKTKPLDELHRML
LDAETIQRPERQPTNVAMVAKPRDGIECFGCHQMGHYRNKCPNETKNKKFIRKKWIRQASSDRKDREHALMVSTRPVKQK
RFVIDSGASNHMINDDTMMSDVENLDVNLIVTTAKQGEHMKATKKGSVALKSVVGENKIKKLKLYNCLFIPGLQENLISV
KRVVAQGKEVHFSNKSVVIQEKSGEVIARGHLLNGLYWLDVHGNQPANNAMLCKNNGLVTWHKRLGHLGQSSMEKLHRHS
MIEGFEIKSSEFDSNTLQCDSCLFGKQTRERFKDTEKPRSNRPLELVHSDVCGYFEEPTYEGYRYFVTFIDDFTHFTVVY
LLQHKSDVLSCFQLYEAMASAHFGKKIACLRSDNGSEYYGNDFIQFCARKGIQMVATVPYTPQQNGVSERMNRTLLDKAR
TMLHESNSPKELWGEAVYAATYLTNRSPTNAMLEHKTPGAAGAGGAAAGPPRGRPPAIRRTKVxLMILLTWNNVTISHGG
HPEEEIVDHNITINEVEDETLDDTFITASDKESSIPEADPVQQTDRIQEQELRRNERTRKQPKWFADYETTFLAGGNMQE
IPQTVEHLKKRSDWNHWKDAIIQEMNSLDENQTWIPANTLGNRKPVKSKWVFTIKDDDRYKARLVAKGCSQKPGLDYHDT
FAPVANMNSIRVMLSLANEHKLIIHQMDVKTAYLNGELNEEVFMELPADEFGKSKIVKLQKSLYGLKQSGRSWNERFDGT
MRKLGFVPLSNECCIYKMGQHQLYVVLYVDDVLIIGSSAKAISWIKNKLSDEFQMKDLKEISHFLGLDIRRDIENQVTEI
SQTGYIENILARFGMENCKPIATPMDANTNWDTKEVQPTEYPYKELLGCLQYLALSSRPDINAAVNILSKYQSRATDVHW
SGLKRILRYLKGTKATKIVYKKRQEEPILQGYADADFGNDVEDRKSISGYVFQVFGNMVSWATKRQPTVSLSSTEAELVA
LCTAAKEGMWLSHLLTELEVDNLPIVIHEDNIPCINFSKEPREHQRMKHIDVKFVFIRDLIKKGDMKVIYKQTNDQPADA
LTKPLSKVQHHKLFGLLNMKIEG
>Copia-113_BRa#LTR/Copia 102-4541  [Brassica rapa]
MSITTTPTSATTGVPPELSPYHLHPSYNPGVLITSVLLTHENYQEWSTELRNSLQAKQKLGFIDGTISKPSEDSPDLARW
LAANSMIVGWIRTSIDSKVRSTVAHVPDAHKLWESLRLRFSVKNGTRVHQLQDAITNCKQDGQSVLEYYGRLTKLWEELQ
NLKTIRTCTCAAAADIEKDKEDARVHKFLFGLDDSRFMSIRSRITDEDPLPDLNLVYSRVVREEQNMITTRSTEQRTDAL
GFSAKNETSKDLSLSVNNSTPSRSRDPARTCTHCGRPGHDISECFLVHGFPEWYLERQNNSTSGTRGGRGGRSNSNRGRG
GRGRANATHASTSINADQIASLITLLQNQQSNLSSERLSGKTTLTDVIIDTGASHHMTGDLALLHDVHDIATSSVLCPNG
RNSPATKQGTLRLSKDYMLHDVLYVPDFHCTLISVSKLLKQTGCIAIFTDTLCVLQDRFSRTLIGAGEEREGVYYFTGVK
VARVHGATKSSDSSVLWHRRLGHPSYKILSSLPAFKSLIIDFSDSSQCDICFQAKQTRRVFPDSLNKASAPFELIHCDVW
GPYRTPASCGAVYFLTIVDDFSRAVWTYLMLEKSEVATLLKNFCAMSERQFGRPVRMIRTDNGTEFTVLRKYFQEQGIVH
QTSCIDTPQQNARVERKHRHILNVARACLFQAHLPSTFWGESILAAAHLINRTPTKVLDGKTPYEVLHGKPPVFDQLRVF
GCLAYAHRRARDKDKFGARSRKCLFVGYPFGKKAWRLYDPETNEFFISRDVLFFEDKFPGLPDTEYVTPPVMQEDVIDDW
LLPTVTSRGSTPASPPIPSLVPTDSSIPSTTTQNPTNASPTTETLPSSTSPTTSIPSDPLPLSPTTSPTQAVLPTTSTSE
SEQPDHTKSPGLLEVLGRGHRAKKPSILLKNFVAHTTESTNPSHVLSSSDQSSLPPVSGKTLYPIADYLSSSVFSEKHQA
FLAQITSDYVPATFNEAILDERFKGAMKTEVTALEDNHTWDVTTLPPGKKAISCQWLYSNKYRADGTIERPKARLVAHGN
RQKEGRDYKDTFAPVAKMNTVRFLLKLAAAKRWEVHQMDVHNAFLHGDLEEEIYMELPPGFRSSDPSKVCRLRKSLYGLK
QSPRCWFSKLSTTLLAFGFTQSYEDYSLFSLIQGNICLHILVYVDDFIIAGNDISTIQRFKTYLNKHFKMKDLGKIKYFL
GLEVARGPEGIFVSQRKYALDIVAECGLLGAKPSPVPTELNHKLPLSKSPWLTDPGKYRRLVGRLIYLTFTRPELSYIVH
LLSQFMQRPREDHWLAALRVVRYLKGTPDQGIMLSSSCDLQLTAYCDADWSACPITRRSLSAYVVLLGDSLVSWKTKKQR
TVSRSSAEAEYRSMADTTCELKWLKRLLAQFGFSHPQPMRMFCDSQSAIYIAKNPVFHERTKHVENDCHTVRDAVQSKLL
TTEHISTKHQPADLLTKALPTPTFDYLLSKLGIRTPSLPT
>Copia-113_AA#LTR/Copia 90-4136  [Aedes aegypti]
MTNGQQVNGSGAGSQGTGSGGLPAAGGGAGVPAAGNGRINAVALPIIEKLKGRENYTTWAFAMKMTLIREGSWYTVSPAQ
GQAIDDEVSLRALATICLSLETTNYSLVQDAKDAKEAWDKLRNAFQDNGLTRRIGLLRKLTSIRLDECGSVESYVDELMS
TAHKLVGIGFRVDDTWLAALLLMGLPEHYEPMIMGLEASGTALTSDAVKAKILQDVKLPSGPKTGGGDGALYSNPKSRRR
GGNNGPTKKDDTCHNCKKRGHFAAKCPQKQNSPRTAGKALCSVFAMGEVSDKEWYFDSGATCHMSRSGDGFVEQHRMAHP
VATANNGSMMSVAKGLVKLDLSEGPIEVKEVLQIPELATNLLSISKICQKGLKVVFDADKCEVREHDGIVIASGTQSGGL
YKLNRKHEQAMLTPSTGIWHRRLGHLNRQSLRKLMAMADGIELANDVIPECIACIEGKHARNPFPSSESRAEGLLDLVHS
DLVGPIEVPSVGGSRYVMTFIDDASRKVFLYFLERKNEAFGAYENFKAMTERQTGRKLKVLRTDNGTEYVNKTFRTSMAK
DGVRHEKTCPYTPEQNGVAERMNRTLIEKARSMLNDSRLPKEFWAEAVSTAAYLVNRSPTRSLQTTPEEAWTGKKPDLQH
LRIFGSLALVHVPKQRRKKFDAKSQKAVFVGYADGTKGYRVYDPVKRSVQISRDVIVVQEGEPQNLVGIGEEQQQIQFME
LYTVDEPNASGGQHPVVEPSVGDDDVDEDDSEESAASDSGSSDLEFMDVLDSENEPALPSQLGRPAVEQQGLRRSDRERR
TPGKYSDYVTYSSFSGEVVSPQSTPMCPKTSFDNPQSYEEALNGPDREKWIAAMREEIAALEENETWELTSLPSDRKAIR
NKWVFKTKRGPTGDIERYKARLVVKGCSQRPGIDFDEVYSPVVRYSTIRYLLALAVKHDLDVEQMDAVTAFLQGELSDEV
IYMELPRGFAGTSKQVCRLRKALYGLKQSSRVWNNQLDQALKKFGLEQSKVDPCLYFRIDGENMIFVTIYVDDFMIFTND
AKLKQKLKSFLHNCFKMKDLDEANFCLGLRITRDRKNGKLWVDQEHYVDSILQRFNMANCHPVSTPAEASVKLDKSMSPT
TPEETREMKEVPYQEAVGCLTYLAQTTRPDISFAVNQVSQFNANPGRTHWNAVKRIMRYLRGTRSSRLTYSKERCADLVG
YTDADWGGEPDSRKSTTGYVFTFMGGAVSWNVKRQPTVALSSCEAEYVALSRTVQEALWWHHFQSQIFGVRAIPIRCDNQ
SAICIARNQGYNPRTKHMDIKHHFVRDVLDQGVVELGYVNTKQQPADGFTKALVNQKLEENKKLIGFVA
>Copia-104_Mad#LTR/Copia 36-4128  [Malus x domestica]
MANANANGHNLASLIPRFGGDNYDYWSNNMKVLLKALELWNIVEAGYEETDNEAALTQAQMNTLRENRKKDSKALFHIYQ
TIEMQVYERVAKAENAKQAWDMIENAYRGKEKVKKVRLQSLRKEFEKLEMKEDETIKDYFIRVTSVVNQMASNGEILEDA
RIVEKILRSLPAKFDYVVAAIEESNDISTFSMEEVQGKLEAHEIKINLRNPPATQPDQALKSQVATTGGNGNQASSPNQS
FGRGRGGRGGRGRGRNLNGRGTNSYGNERGSSSNSNNEGERNFNSYRGRGCVFQRGRGRGTPECYYCNKPGHKIRECRFK
KADDEKQYGAGYMHQTNSGDGDYKETLLLACHGDQMNDVWYLDSGASKHMTGNKNLFSALYKFDHGQVRIGDDRAYKIEG
IGEVSFKSKSGTIEKVSEVYYVPGLKSNLLSMGHLLRKGYDIRLRGDFCVLKRKDKFVAKVGLAANNLFPLKLQTTKLSC
FASAEKEVSKLWHDRYGHLNYGSLKLLSNKRMVHGLPQIDPVDGVCEDCQFGKQHRSSFPSESSWRAKKPLELIHSDLCG
PMPVASFGGNLYFITFIDDFSRKVWVYFLKEKSEAFQAFKDFKAEVEKFVGLPIKSSRTDRGGEYLSNEFQKYCRDHGIK
HQLTARYTPQQNGVSERKNRTIMEMVRCMLKKKRLQQELWAEAVSCAAYLINRSPTKSLKDCTPHEAWYGVKPRVQHLKI
FGCVAYSHVPKELRNKLDHKAEKCIFIGYSERSKAYKLYNPKTKKFLISRDVHFDENAFFEEENGTAKLPIMQEEDDTYQ
SEIAPQSPRATSSDDNSPPRKFRSIRDLYDSSEQVDLEDNTIFFAFFAGEDPISFNEACEEEKWKQAMDEEIKAIEKNGT
WELTNLPAHKNPIGVKWVYKTKKNADGSINKYKARLVAKGYKQKEGEDYTEIFAPVSRLDTIRLIISLAAQNNWEIFQMD
VKSAFLNGVLQEEVYLEQPPGYVKKGEENKVYKLKKALYGLKQSPRAWYNRINSYFEKHGFQKCPYEHTLYVKSTSRGSF
MVVSLYVDDLIFTGNDLELLNGFKLSMMKEFEMTDLGKLHHFLGIEVSQSKKGIFISQESYAKEVLKKFGMENANPVATP
CITGLKLSKDGEGRPIDSTKFRSLVGNLMYLTATRPDIMYAVSLVSRFMEKPHSNHWEAAKRILRYIKGTVDYGIFYEAN
VPAKLIGYTDSDLAGSIDDCKSTSGYVFSLGSGVISWSSRKQPIVALSTTEVEYVAASLAGCHTVWLLGILESLMHKQKG
PTTLFCDNSSTISVSKDPVLHGRTKHIRIRFHFLRELVSEGVIQLKYCKTDEQMADVFTKPLGGQVFKRDVARLGIKSKF
GLREA
>Copia-102_GM#LTR/Copia 86-4433 via tfasty with COP3_MT, 80.5% SW:4455, 1 frameshift and 1 stopcodon. [Glycine max]
MADQPKFHPALTITNVKSLIPITLDAEHGMYHSWAALFKVLVRVHDLHHHIISPTEAQEVAAYAASKAADPALWKRLDAA
VLQWIYGTISTDLLHAILLKDDTAQGAWARLESMFQDNKASRATHLEEELADLNFENFSSIDSYCNHIKSLADQLADVDA
PLTNSRLVLKLTAGLPEAYAGTVDIIQNQEPLPSFASCRSRLKLAERTIKNRLAKEGNSGNRSQAALLTSTDSHHGTDNN
TSASSASSRQSSKGNKQKKSNSKVSGKSRNSNGQVAPQQSGLMPFNWQQQPWAAWAPWLAQWPNPPPCPYPASSWALKNV
AAPTVGPRQSGPGILGSRPQAYNAIAPSTSYTPTDIEAAMHALSFSQPDGNFYMDTGATSHMSADQGIFSSYFNSSIKNN
NIVVGSGHLVPIVGHGSTTLPSPYPPFHLNNVLHAPKLIKNLISVRKFTTDNSVSVAFDPLGFSVNDLQTGARLMRCDST
GDLYPLFSNTQATPPVNNSVFTAISSDLWHTRLGHPGDAVLRSLNSKNFINYNKACKTFCSSCPLGKHSKLPFSDSMSHT
ASPFDIIHSDLWTSPVVSSSGHCYYVLFLDDYSKFLWTYPIAKKSQVKHLFKSFHSLIHTQFTRDIKTFQCDNGAEYING
TLQEFFxSNGMLFRLSCPHTSPQNGKAERHIKSINNIIRTLLAHASLPLSFWHHALEMATYLLNILPTKVLGFMSPTQIL
YQCDPIYSELRVFGCLCFPLFPSTSIHKLQERSTPCVYLGPAPNHRGSKCYDMSSKKIIICRHVKFVETEFPFSKLHSPH
KDDYTFLDFNPIFHHLHHQSNTPPNLAHQADPTSRPRPVASTDPPQPTHSSTSGTVTLHALDQQPGSPPSFPMRTGPVHQ
QAHHPSPDRPTTIPTPLPSPTPHPMTTRAKNGIYKPNSKYFSNFHAMTTTTISPLPKDPASAIRDPNWKNAMLDEFNALV
ANKTWELVPRPPDVNVIRSMWIFRHKRKSDGSFERHKARLVGDGKTQQPGVDCDETFSPVVKPATIRTVLSIAVSKSWHI
HQLDVKNAFLHGYLNETVYMHQPMGFRDKGRPDHVCLLKKSLYGLKQAPRAWYQRFADFVATIGFSHSKSDHSLFIYSQG
LDMAYILLYVDDIILTASSDRLRKHFMALLGAEFAMKDLGPLSFFLGIVVSRDANGMFLSQKQYATEIIERAGMANCSSC
PTPVDTKPKLSASKDSPYEDPTKYRSLAGALQYLTFTRPDISYAVQQICLHMHDPRNEHMSALKRILRYLQGTLSYGLHL
YKSSFDKLVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSDSCWIRNLLLELHCP
IPKATLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHFVREKVAKGDVRVLHVPSRYQIADIFTKGLPRILFEDFRASLSVR
EPPVSTAGV
>Copia-100_SB#LTR/Copia 34-4489 via tfasty with Copia-53_ZM, 1 frameshift and 2 stopcodons. [Sorghum bicolor]
MVMASPPKEKETGSGSGAKSPLRERTPDRLPRRSRGRGRRRSRTRQPREAVVERVVRETGGSDKWPQLTKTNYDSWSLLM
KLKLQAMCLWDAIEEEDADFQDDRSALEAICSGVPEEMVPTLATKATAKEAWEAIxTMQIGDDRVRKSTAQNLRVEYEQI
NFKDGESVEDFALHLSNIVQRLAILGDPEPEAKVFAKYLRVARPRYKLLVVSIELLLDISTLSIEEITGRLKAGKDDGDL
GSKARLNHIEDELVDRVMCHGSSSLAEGRPAAGALLIQPEAWARRWLIPCGGSSRGQTRGAGGGGTPKLPTGGTDKGKKK
LAGDECAYCGKTGHWARQCRKKKRDEQAHAAEAEEEAALMMGIATISIDGEDDVASAVVADSGARAHWVFTDEEPSVVSA
RSTVALATASRTTSSTEVHLQEDKLFVQLGEKHDEGETRWILDTGATNHMTGDRSFFSELDTGVHGTVKFGDGSVVNIEG
RGTILFMCKTGEHHQLGGVYFIPKLTANIISLGQLDEDKFKVLIEEGVLRIWDQRRRLLAKVPRSANRLYILDVNISAPV
CLAAHADDVAWTWHTRYGHLGFNGLKLLSRKEMVRGLPAIEHVDQVCEGCLAGKQRRQPFPAASKFRASRSLELVHADLC
GPITPPTPGGKNLFLLVVDDRSRYMWLTLLASKDGAAEAIIQLQARLEKESGEKMGTLQTDRGGEFTSRTFQNYCVEHGV
QRHLTAPxTPQQNGVVERRNQTVLGMARSMMKSMNVPGWLWGEAVNTTVFIHNRSPTRSVEGKTPYEVWYGSKPAVHFLR
TFGCTAHVKVAGGHQRKLDDRSTPMAFIGYEPGTKAYRFYNPNTGRVCISRDAVFDERKPWRWGEPEDDASSAETAVPRQ
VYDGDVPPGRASRRRRYWGEPRHRSPATPSTPVATATPPPAGGVQFATPPSGNPDLDDDHDDAPLRFRTLNNILGQAAEH
TACAIEELLLAVGEEPATFEEARHEECWRKAMMEEMAAIEENKTWKLVNLPHGHRPIGLKWVFKVKRDEAGMIIKHKARL
IAKGYVQQEGVDFDEVFAPVARMESIRMLLAVAAQEGWLVHHMDVKSAFLNGELKEEVYVRQPPGFAATGHEGKVLKLEK
ALYGLRQAPRAWNTKLDASLRKLGFAPCASEHGMYTRGVAVSRVVVGVYVDDLIITGARLEELGAFKEEMRRLFKMSDLG
LLSYYLGIEVKQGRNSITLGQPAYAKKLLEKAGMASCKHISTPMEVLLKLSTKGTTEAVDATLYRSLVGSLRYLVHTRPD
IAFAVGYVSRFMEAPRQEHLVAVKHLLRYIAGTTDFGLVYPKLSKGDKRLIGYSDSDMGGDVDERRCTAGVLFFLGDLPI
TWQSQKQKSVALSTCEAEYIAGAMGACQAVWLVQLLSDVTGSVVQAPILRMNNQSAIALSKNPVLHDRSKHIDTKFHFIR
ECVESGKICLEYASTEEQLADILTKALGRARFCELRDKMGVVKLR
>Copia-102_SB#LTR/Copia 122-4373 via tfasty with Copia-74_SB, 1 frameshift and 3 stopcodons. [Sorghum bicolor]
MSDSTSEKSDKDTMERAWNQAAGSLVWPMLSRTNYQEWSAHVRCNLEAMYLWDAIESDKVERRRDRLALGAMIRGVPPEM
HSMMLNKKSAHEAWGAIKSMRMGAERVKEVNAQKLLAEFESISFKPGESIEDFAVRIGKLATDLKGLGEDSVTDTRVIKK
FLRVVPARYNQVAVTIEMFCDLKTLTVEELVGRLRAAEDRFEPAPESTEKSKPSLLLSEEEWMAKNRSRMMNADSSSSGG
KKGAYYVKKDKNGGRGSGKNDRDKRDSSNCQPRRNGRCKKCGVYGHWARECLNKKPGKEDPEDAAHHVAGEQERGPALLV
ASVCNIERSSVSGAPGLFLNQERIFPAKYDEGAWVLDTGATNHMTGCRSSLADLDETIRGAVRFGDGSTVEIYRVGAVTM
AGRNREHRVLTEVYYIPSLRCNIISLGQLEEAGCRVEIDKGVMQVFDREQPRAARGILIQAERKNRLYVMKVNLTRPICL
LTKMEQEAWRWHARFGHLNFRALRELGSKGMVEGLPQIKQIEQVCDGCALGKQHRAAFPRVSNYRASAGLELVHSDLCGQ
ISPPTPGGKEYFLLVVDYYSRFMWIELLEKKGEALMCFKKIKVAAELESGRRLKALRTDRGGEFNSGAFVVFCNEFGIRH
NTTTPFTPQQNGVVERRNQTVVEMARCLLKSMKVPSKFWGEAVKTAVYILNRSLTKSLSGKTPFEMWHGKKPRINHLRTF
GCTAYAKIVRPGVSKLTDRSVPSVFLGYEPGTKGYRVYDPIKDKLMVPRDMVFDETKPWNWEGDEGRATGEAAAVPFSVQ
NLDDDNPTIGPAAVEEAETFPTIEGAEPNSPAVSIPSVGGDQNSPPHTPDSVHGAPAPIQxATPPTGGSVDSEGVPLRYC
TIPNLLDSTDELHEFxYSGLCLVAAEEPRSVDEALTEQCWRQAMQSEMxAIEDNRTWDACVLPPKQKAIGLKWVFKIKKD
PEGNVVKYKAHLVAKGYAQRHGVDFDEVYAPVARIETVRVVLALAARGGWEVHHMDVKSTFLNGDLTEQVFVQQPPGFIV
GTGDKVLRLRKALYGLKQAPRAWNAKLDKELISLGFERSKLDHAVYRRSNRNSFLLVGVYVDDLIISGPNVRDINVFKSE
MRKKFSMSDLGLLSYYLGIEVKQGADDITLCQSSYAAKILNNAGMKNCNQCETPMECRLKLSKLKEGEPLNTTEYRSIIG
SLRYLVNTRPDLAYAVGVVSRYMEAPGREHWSAVKHILRYLRGTMGCGCKYEKGAELKPMLIGYDSDFAGDVEDRKSTSG
MGYFLGSSLVTWASQKQKIVALSSCEAEYVAAAGAACQGIWLSRLVADMLGMKVTTVKLLMDNMSAIALSKNPVHHDRSK
HIDTKYHFLRKCIEDGKVEVDHVGTAEQLADIFTKALGRVRFVELRSALGVVKVPSV
>Copia-104_GM#LTR/Copia 54-4879 via tfasty with Copia4_MT, 75.9% SW:3873, 2 frameshifts and 1 stopcodon. [Glycine max]
MASSNFLFPEGNSINRPPIFNGVGYHYWKTRMQIFIEAIDLNIWEAIEIGPYIPTMVVGNATIEKPREQWDEEERRRVQY
NLKAKNIITSALGMDEYFRVSNCKNAKEMWDTLQVTHEGTXDVKRSRINTLTHEYELFRMNQNETIQDMQKRFTHIVNHL
ASLGKIFPNEDLINKXLRCLSRExQPKVTAIAESRDLTNMSLATLFGKLQEHEMELMRLNQHEENDKKKKGIALKASSSI
QEESDKEDLNEIEEDDDFSFFVKRFNKFLRNKGNQRRTNFNPKKRGEDSSSVPKCYECNQPGHLRVDCPSFKKRMEKSDR
KTFKDKKAKKAYITWEDNDMDSSGDSENEVVNLSLMAKNYESEEEVTSSNNNLSISFDELQDAFNDLHKESVKLAKLVSF
SKKTISNLEKEVLKLNEELENLRTEVKXLKPIDTNQSSTIKLIQDSNEASNSCKCCNKFKEEIKDLKNSLAKFTXGKNNL
DIILGKQRCVFDKAGLGYRPDKQQKLYKNFFASTQKNSSPFLTCFYCGKKGHSASTCYFRKNSNNIKMIWFQKDLLSKLT
FKDPRKFGYLSQKHDYMNEGSLKKSWYIDSGCSKHMTGDASKFTHXSPKXSGHVTYGDNNKGKILGVGKIGTNPSTSIEN
VLLVDGLKHSLLSVSQLCDKGFLVSFDSHNCVIENKHDKNIKHIGYRTNNVYMINLDKTSNHAQCFXSKDDDSWLWHRRI
AHINMEHLNKLISKDLVIGLPKLKFEKDRLCDACQKGKQVRVSFKSKNIVSTTQPLQLLHMDLFGPSRTMSFGGNYYALV
IVDDYSRFTWTLFLTHKRDVFHAFKKLAKIIQNKKNLNIASIRSDHGGEFENKDFESFCDENGIEHNFSAPRTPQQNGVV
ERKNRSLEEIARTLLNDTNLPKYFWAEAVNTACYIMNRALIRPILKKXPYELYKGRKPNISHLHVFGCKCFVLNNGKDNL
GKFDAKXDEGIFLGYSSNSKAFRIYNKRTMIIEESIHVAFYETNPIRPRKETLDDITDSLEDMHIHKEGHKGKGNGNDED
SQIDETKTSTNTDLPREWRTSRYHPLDNIIGDXSKGVTTRHSLKDACNNMAFVSLIEPKNLNEAIIDEHWIIAMQEELNQ
FERNKVWELVDKPNDHPVIGTKWVFRNKLDEHGIXIRNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAFASIMDF
KLYQMDVKSAFLNGFIQEEVYVDQPPGFENSEKPNHVFKLKKALYGLKQAPRAWYERLSKFLLEKGFTRGKVDTTLFIKR
KLHDILLVQIYVDDIIFGSTNDSLCKEFSQDMQNEFEMSMMGELNFFLGLQIKQTKNGIFISQSKYCKELINRFGMENAK
HMATPMSTACYLDKDETGQSIDIKKYRGMIGSLLYLSASRPDIMFSVCMCARYQANPKESHXSVVKRIMRYLLGTINLGL
WYPKNSSYNLVGYSDSDFAGCKTDRKSTSGTCHFIGSALVSWHSKKQNSVALSTAEAEYISAGSCCAQILWMKQQLSDYG
LKLDHIPIRCDNTSAINLSKNPILHSRTKHIEIRHHFLRDHVQKGDCVLEFVDTKNQLADIFTKPLPKENFFAIRRELGL
IDLNNLES
>Copia-104_BRa#LTR/Copia 16-4178  [Brassica rapa]
MAESTDTISAPTLSISQCVTLKLSSSNYLLWKTQFESFLSSQSLLGYVNGSAPRPSPTVSVQQGEVVTEEANPDFVTWIK
RDQLVMAWLFGSLSEEALRSVYGLSSAQDVWFSLGKKYNRVSATRKLDLQRKLQGMSKNQKPMSEYLSEVKSVCDQLDSI
GCPLTEQEKIYGALSGLGKEYESISTVIEHSMESVTELCFEDAVFKLVTFDDKLKAYTQATEPTPHLAFHTGRGYASRGR
GYYSNRGNRGRGSGSYSTRGRGFHQQFPGSNSNSRPTCQICGRYGHSAARCYNRFDQEYQSPEAQHNALTTARMSDHQYT
GQEWFPDSGASAHITNNGSQLQSSEPYLGTDQVIVGNGVFLPITHVGSIPLHTNKGILPLNDVLVCPDITKSLLSVSKLT
SDYPCEFTFDDASVLIKDKVTKQVITQGQRRKDLYVLKDARFQAMYSSRQQAASESTWHQRLGHPHLDILQLLSRNKTIV
FNKSSNKAFCDSCHLGKSCQLPFLASQFVATQPLERIHSDLWGPSPVVSTQGFKYYVIFIDNLTRFTWFYPLKHKSEFYS
VFLRFKTLVENQFEKKIKQFQCDGGGEFVSNMFVNHLNECGIQQLISCPHTPQQNGLSERKHRHLTELGLTMLFNAKVPQ
QLWVEAFFTSVFLINLLPSSVLPDNKSPYELLHQKAPVYTALRVFGCKCFPTLRPYMHNKLDPKSLPCVFLGYNEKYKGY
RCYYPPTGKVFINRHALFDENSFPYADIYSRFHKPSDSVLLNAWRLANIEQTKAADRAVEVPEEIHAPRSVHTTPPVQHH
AASPMDLSDATSGDENEQQQHQEDQVAVLDEAPAPHPMTTRARSGISKPNPRYALFTVKDDDAEPKSLKAALKHPGWKKS
MGFEIENMEETETFELVPPADNQNPLGSRWVHKKKLNADGTVLKLKSRLVAKGNEQEEGIDYIETFSPVVRSATIRTILH
IAVTKRWAMRQLDVQNAFLHGDLKETVFMRQPPGFEDLNKPDHVWRLKKAIYGLKQAPRAWFDKFSNFLIGFGFECSFPD
PSLFIYHQGSDVIYLLLYVDDMILTGNNNVLLDRLLVQLNQVFRMKDMGEVHYFLGIQVHHYADGLFLNQSKYATDLLIT
AGMQDCAPMPTPLPLKLDKVPGQDELFSDPSYFRSIAGKLQYLTLTRPDLQFSVNYICQRMHSPSQSDFTLLKRILRYVK
GSLEMGISIKENSDSTLVCYSDSDWAGCRETRRSTGGFCTLLGSNVISWSAKRHETVSKSSTEAEYRTMSLATSEVVWLQ
NLLKAMGLQQQRTPLLLCDNLSAVCLTANPMFHKRTKHFDVDYHYVRERVALKALEVRHIPASLQLADVFTKSLSQDSFY
RLRGKLGVSDPPTPSLRGCINQQGPITS
>Copia-28_BG#LTR/Copia 81-4556  [Blumeria graminis]
MSIGNSESSKMVPKIEEKLTSSITPVWSQPKASSSTTGNVGTLQLPPYFKLKGEENYEQWKNNMENIALANNLEDYICDE
VEEPPHVSIKERFSNKDAFEMRKQWLAGDARMKLAIMINTAPNIHSMIDGKTSALQMWTILQERYEGKGWNLEYRAIINW
SNIRFEDFMDLNHYISEFTKRVEKISSLSDSIPERWNGMFFIAGVARKFPVWAERQRSQARNTAIAPSLDYLIADLLDEA
RNFEMSSSSTTMMAKGRGKANDGGNKFNCQYCKNGKCYEHNKLLRQDWEAKNGKKWLTRQNYLNQKNSEKLKKRDAKGKG
KAKEAKDDDSDNNSTSNFGIPAFSAFSHVASSSFSDGQSPSSTYAIQKTHWNDRWLNDTGSDEHIANSLDRFTNYEEKVG
LRPIQCGGGSVTPKGHGTVQLTVALEGGRHHVMELKQCLYVPGFPTNLVSGKKLLRAGCTIHDGYVKTSSGSILLYTDSR
CFIKEAVEMYANVAYPAGLSDIKPDLQLMHRRLGHISIENVRRTGQLTRGMKYIDRIDKVNVHPGELCEACELSKPIRHV
SKEARAKPKKIFDAVGIDVIKVIPEGIMNQKYATIFTDLATNMRWVITHPEKRGAFENVKNFVVETRTQYDRTIKKFILD
GGLEFGGSKLSNLMMELGTHLEVTTPYSSYQNGGSERSNRVILDKLRTVMVDQAIPEFLWPELIRAVAHITNRTANCVFE
KTPFEMFMDHIHPTDDNKPSIAHLRVLGCKAYIQIPKEKRAHAAKLAVRAEVGILVGYEGNSIYRLYVPSRSGKKIIRSS
HVRFDEHGYISDAPLEEFGTSVEGDTQFITESTSQQKSSRTCGGNSDQNTESSRPQTKSPLEIVHENLGSLQKEVTNNVD
TDEGIVSEPEETAEMPMQTNATDEGSMLEANKGFQEEKKICQDKSRKTRVYESPTEPRMTRSRAAQLKSELANDNSSAAA
AFIAGRDISDDPENIEEALASKNANEWRLAIRREYESLLRKKTWALAQKKDIPAGQQLLSVKLVFKTKRDKEGKVLKYKV
RCCVRGFEQKYGVDYEETFAGVARSETWKVAVALAALYGLEMDQMDVITAFLNNDMDKEVYVMLPPFWEKIPNSNHVGKL
LRGMYGLKQAPRLWQQLLAKQLATIGFKPLTADPGTYVHEVTGFIIVTYVDDILLIGKQGVEFGKMKKKLLGLFETEDMG
PAAYYLGVRIVRDWKKDEIILCQDAYAKKLLKRFGMEDCHPVSTPFEPGAMINMIPYDEVAPKKDITLYQSIVGSVMYLA
SKTRPDILWTCGVLSRFNHNPSPQHLRAAKRVLQYLKGTVNLGIKFGGTDSCKLYGMADSDFAGCHSTRKSTWGYAFFFG
GGVISAASKRFESVAQSTTEAEFYALGKASMEASWLRMLLIQLGYKGEDAKKIKIYGDNQGSLKLAENPVFHNRTKHIAT
KYFYIRERMERKEVELEYVATKEMAADGLTKGLTFDKHRKFLKMLNMTTYSA
>Copia-1_TC#LTR/Copia 164-4071 via tfasty with SHACOP4_MT, 79.0% SW:3460, 1 frameshift and 4 stopcodons. [Theobroma cacao]
FSGENYPIxAVKMKAYLRAFDLWEVLEVGGEPPVMRHANPTITQIKQHSEEVAEHYKALSCIHSAVTNSIFTRIMACESP
KEAWDKLKEEFHGSDKTRQIQVLNLLREFEVLKMREDETIKDYSEKVLKIVNQLRLLGEELPDRRIVHKFLVSLPEKFEA
KISSLEDSKDMSKLSVTELINALLAQEQRRAIRQEESVETALIARTKDLRLGNYNAKKHDNIRRDKEKKNGDGKQNKxRN
KFPPYQHYKKRNHTPKYCWYRPNVKCRSCNQFGHVEKVCKAKNSHTDEKAAVAEQVDATEEQLFMAQIADDEERNTWLID
SGCSNHMTGNDQLFTKLDRNFKARVRIGNEIYLKIMGIGTVAVETMNCTKYISEVHYVPEVTQNLLSVGQLAENHYTLLF
KEKFCTIFDPSGDELMIVKMKNRCYSIDxMKIEHTTCVGQEIDADLWHKRLGHVNFISLSHMINSNTVEGLSSMSIPKQI
CSTCIHGKQSRMPFPLSSSWRASDKLQLVHSDVGGPVNTASLSGTIYYVIFIDDFSRYCWIYFLKNKSEVFEKFKSLKAL
VENESEKRVKVLRTDNGSEFCSNTFKSYLVEKGIKHQLTISYTPQQNGVCERKNRTILEMTHCLLHEKGLPKLFWAEAAS
NAVNLLNILPSSSLKNRNAHEIWLGEKPSMTHLRIFGCICYVQIPEQKRTKLDYKTEIGIHLGCSSVSKGYRVYEVQSKK
ISVSRDVWFDEKSRWNWETNAVGISEKVNFFDDAVLNEQNHEEDIEDESLAVRGTRTLQDIYSRCNTAIVEPPNFEEASA
DNNWRQAIETEMEMIRKNGTWVLVDRPVDQNIIGVKWIFKTKLNADRTVNKYKARLVVKGYSQVYGVDYWETFTPVARHD
TIRLLTAAAAREGWKIWHMDVKSAFLNGTLSEDIFIEQLEGFAEPGNEGKVCKLVKALYGLKQAPRAWYDRIDTYLKSPG
FIRSANEPTLYVSDSTFSDKLIISLYVDDLLITGPSGLVLDDFKRSMKQEFEMSDxGETTYFLRLQFHQASDFIFVHQRK
YACEMLIRFRMEACKSVETPLVTGAKFNKDDGAPAAVDSTYRSLIGSLLYLTASRPDLMFTASLLSRYMQAPSEIHFLAL
KRVLRYIKGTVDYGLKFEKRESKELVGYCDSDLAGCLDDSKSTNGFCFSFGSAVFSWNSRKQEVVAQSSAEAEYISAASA
TNHAVWLRKMLGDLGFVQIEGTTLFIDSRSAISIAKNPVQYGRTKHIRVKFHSIREAVKNGEIKVEHCSTEDQLADILTK
GLSKEKFIYLRAKLGVCKSGTKE
>Copia-1_GDe#LTR/Copia 197-4744 via tfasty with TTO1_NT, 57.2% SW:1351, 3 frameshifts and 5 stopcodons. [Geomyces destructans]
MEYAERPRMTKLSGRNFRNWAKQLRLTLKDRKVLSAIEPDCKTDDDVDTAPAKDELPELAQARKDQIADRRNTRACSIII
ECCIQSIVDKIIKFDTAKEMWDYLHKTYARDGLQQLIAKKDTFNSYSPSKTMPVSDVASTLDDFEEDIAQINPNERPTEL
TKTGHLIRIMLAHGGKYDIAAAQIKAAKVSDYQDIIANFADIEEQIKESKAVIESARQASTSTENTRGNSGRAAAEDTER
GRAPQSDNRACYHCRKTGHFQRDCSSKRRGEPKSTGPSTGPLAAPGGGKGLSPQPSEEANAAGIRTTPVTETSWIASIKD
PSSVTSIKDPSSVTSNWVGEARDQGDSWIMDSGCSRHMTFARKAFVNYYPLGKPIAVRLANGTEIQAVAEGTVSFDIAVN
GVKRRIQLHEVLHVPQLAGSLVSVPHLQDRSIMTRTTREGKMVLELDEQTIGVAVRVGRSYVLNGTxEGTITALRAVAMS
PKDAMIWHQRFGHLSSKSLSLAHTAVDGLPGPIGDLADPCGECLLNKSMRVINxQASEHAKAPLDRIHSDIWGPYRVPSI
SGKNVYFVTFTDDYTRKTWVYVMQSRGQLRGIFTEFRTEVKHQTDRKIKIVRCDNGSEYEALERDFGPSHGILFEFTMPY
TSYQNGVSERLNRALVAVIRAMLAGAQLPKWLWAEAVMAASYLRNRLPIGPGGKTPEEAYSGKRPSVAHLRVWGCVPYAN
LSLDQRQGDKLAPNAIRTALVGYMPTSKQYRLYDPVADRILTATSEIRGRSNDLIFLMPATVPTKMWDSTPWKLFPRGIS
PSMQEISAIPAGIPQxGALKIPVRISRSWIQAGHVTCQPGFPARDDPPPQPTQPNQEAASDNLSLAQQHQHGDDGSDYAV
RRRPVASEVSCDGSPLGPATSPSPVLMSGPDDNSRFDREADRSGDIFAEDEELSETADDQLCAEAEASREETPHDEEFIA
RRSRRARQPTRPYEEAREALFEEELGAHHAASSKLPIPDRYSKAISDPEHGADxTLAVQEELAQLQSLGTWERAKLPRGK
KALGCRWVFAVKYTPTGLLDRFKARLVAQGFGQIPGDDYLETFSPTIRAESLRLLLAIGAYEDMNIRQIDVVSAYPQSEL
HAEVYMRPPEGLYCPEDCVLRLRKSLYGLKQSGREWYIEACKGLGQLGFQPVFREPSIFVTPDRRILIGLYVDDMLILSK
ESSDIDRVVKGISKRWKIKDLGEVNMILGIRVTRDRKNHRIYLDQEGYIDEVIKRFHLGMATAFPIPASTDQSQLLKGND
SEAEADQHLYQRGVGSLAWLAICTRPDIAYAWGQLSQSCSRPTIxNWNGVLHVLHYIKGTRTLRLSFGGIGGNSTPYLQG
YSDSDYAGDQTDRHSVSGQIFMLNMGPVSWNSTKQRCVATSMTEAEYIALCKASKQGQWLHTLLHELGRRKLLGGRGYQV
QILSDNQASLAIAADPMSHRRTKHIDVRYHYVRQLIAFKKMSVDYIPTQDMLADVLTKPLAQPAFSHCTQGYLMQQT
>Copia-2_BDJ#LTR/Copia 5-4555 61.5% sim to Copia-2_HAE, SW:1417, [Batrachochytrium dendrobatidis]
MSPEESTRVKVADGLFIPLLTNTNFQDWNNGIHAAMSSFNLWELHIKIAPPEEKTNTFIVNDYKAYSILATTTGKENDDL
THNSEGAPLSAHDAYKAIHAHYSTGSTSSRIQLFADLNAIVYDPDQGVEVLYNSMIEIRKKLANQKRCYPDVEFIEMMIS
RLIVVSHHWGNLRTRYDRLSEEEFSTTTTRRDLLAEERSLISAGVLPPITTGEHAHQANTRSNTKLMSKNSNRNNANQMQ
SSNGRHTAPQNQDSKRSPFWPNGKRKVLCNNCGRLGSHTEKDCRLPTQNSNYYSQNNDTYGLNACDISKTQDHTSTLKTP
QDEFMFQATNGTNGMQDKLILDSGATAHMICHKDWLTDLVPITREIHCSGAEKHVATAKGTLTIESEYNGRKSTIHLADV
LYVPTFKVNLLSETSFLDKGCDIDITRYSRTIYAANKKPILLCNRVKNLSIADCKIHTPIHQSYRSQIVDDSDNDDAYFS
SIASPAVSLETWHKRFGHLNTDAIKALANLTNGLKLTSDKGLTNQNCSGCTQGKAHRAPFERIRESRTNGINELLHMDLA
GPFEVESLGKAKYYLIIVDDFSRYSHLYTLQAKSQTSERLKEHIALMETGTGIPVRRIRSDNGGEFLSKDFAAYLKKKGI
EHQTTAPYTPQHNGVAERRNRSIGNAIRSMILSAGLPKRFWAEAAATAVYLQNRSPHSAINNLTPYEKKFGKKPWVSHLK
TFGCEANAVIPSTLLRKLDSRTSNCVMLGYKQGSKAYRLYDLDSKKIISTRDAKFNENNFPFKNQKTKQRSQQTGKLKII
QLEISRTQEIPVKKATPAKEVITVTETQQEEDLGNSSQTQPIIATSEYNDGTYPTVHQSRPNPEDSNQASQIIRSGGVTT
KDPFESSSPSGFNPSRLPNPLRPYKGYIYEEITDEEPESHSSPPTGRGTSRNKQILSSLNEKDLKNNTRALTAIETVEDK
AELSTYSPLYKNPHSFPELIDEDFSYFSAGIEDNIIPTNWKQAMATKDSQSWRLAADLEMNALHKNQTWIECQLPSGRKP
IQVKWVFRIKRNSDGTIDKYKARLVAKGFVQIPGIDYNETYAPVLRFTSFRTLLTLAAILDLEIDHTDANNAFLNGVITE
DLYIELPEGYNNNINNKDSGRTVGKLQKALYGLKQSPHKWNEILVQECTNLGFIQCISDPCIMIKRDQHLFVMIAIYVDD
ILFVGNNRPYLDEAKKDLFKVFSMKDLGPIHTCLNIRVIRDRQNKRISVSQEHYLKEVLTRFNMTDCKPACTPFDPGIVL
TPALETENTTDAPYREAVGSLMYAMVATRPDLGAAIGLVSRYLHKSNDSHWTAVKRILRYVKHSISYSLVLGGDSPTLTG
YCDADWAGDVDSRKSTSGYAFFIGNGCISWRSTKQTSVAVSTMEAEYIAAATATRELLFLRTLLKELGFEQLNPTILYSD
SQSAIANTKNLAPNHAATKHMDVKLKFLRDQVTNKTVSVEYVKTNDQVADILTKGLPRFAFDKLSDLLGLYPVQGVV
>Copia-2_FCy#LTR/Copia 193-7983 No matches to other Copia proteins until pos 4507 [Fragilariopsis cylindrus]
MSQQEEQEDTNETLPTEGSDNDSRSTYSEATSGNQAPEALGEGTRSPPFWADANHRTELTSLGYNVHTPNPRRTTRSRAP
TIRYTPSGDTNQEEADIENNLLNIQVEVNTAREEDESTASAYSGLRPGDPLYVSPPRLPLPDSSSTDTSSVPERPSPPEP
IEEVIDTSFTLGTFPTVHDPYVKGYEITARNPVPINVPLPSLPETPPLPSLPELPLTERLDTLLTEICNFRVRNLTTRRA
FATNITPSNTSSPKMATTPFDAQLEVLLVNMLKCTTATNPIYLVLDQNHIHTFEQFRSIEIDDLPTFKYEKPTTAGTEET
LHITPLKEVQNCVHFCCYLETAAAVALAGGVIDCDDPSTWDYADMLNWKRAITGKATYLRTLVIPATTTTGAPGSPTMIV
SGPITLKDDEAALISWNRKPRDPVKYPTINNDAFYQDWKLNFKRQIIQDTLERVLDPNFNPDLRSSTCSVRSGPDAELAR
LQVNYFAQILCVVLKNPEGLGLLMVRPDDPLYVWRNHEDHQNDSDAAQIASTTLMKKLIALKFSDFNTRHEFLTSFQDTS
RRYDQLATNVMDDSVKITLLQAAVMADSALINSWQSCQDSKRGSALAGSSRPVTYHEYITFLIKSAKNHDLYTPYKKPSR
QAHQATSESFYNEEMNVDYGDTDDGIDEFLAHMSVSNEPMTEHAESTMQAYAAFQKNRRPPRERDPDTEIPKPIFEKCPR
DLRIAWSKAPNDIKKQILKIKNHPTKQGAKKNSELGVYISDFEGYDSDASGQSEHTYVYDADDADDTSVIEATDLTANAA
RRRQPNQGILKKKELPRKTELPLADPRRFMANKTTPVIGKDGKVVGHIAYTAAMAKINHRFDQVDCHLPNTSKDNYVVSV
NATKFFNEPLALMDGGANGGIGGRDMRLMSYNADGRRVNIGIAGDHQMTGKRLGTFCSVIVTNRGKILAIFHQYAHVPEQ
EKSIHSKCQFQAHNNLVGDTATAYGGPQRIQTADGYQLPLSIRSGLPYIRQTYPTNDEIKELTHVQFTSPAEWNPNLNDD
SRTPEEMLKQFPPMPRSAINEFYDQEGNINYDYLSKQEHRPIRATVQTVEIEHDDDDSVGSMPGLQCRAQEEDSSGDEED
SSSDDEPVVNKFKQPTTIVWNDPIDDSNGEKIECPRLRKSKLKRRIRIKEKRLKAAASKQELIDKKPSAVTANDLPIPII
DNMVNDNESPTMVDGIEFFSTDPHPLQPNIIDDVIEEMKMDDLLFYDSVDKPQDSTVFVDTKSDTSYLDDLSTFRPTEHE
YWEDFLMDESTQRLIYQGRLDYYEQYDINATDIANVMNPLTPRYSVPTVIDYESKRKYFAHLPASVVKATFKHTTQNMKL
PPASYLHKMFKSPNPSANLKRRDEDDATDMIYSDTPACNGGEKCAHIFVGRKSKLTDAYKVKHQNAEDFLLCFQDRVRQR
GCPTGLVADNAPMYRGWKNAVYLRDICISLWQCESKYQHQNYAENRWQTVKRYTNRVMDRSGCPPYVWFLALSYVIFCLN
NCVDPNIGEGNKSPLQIATFQMTDISPLLYFYFWEPVYYLVDESEQHFPSKSKEMRGRWVGISEHIGNKMTYKIISDTTG
NEICRSAIRTARDNTMKNLREDPVTVDKDLFNVENILSPAEDIANNKLKEVTSGNTFNDFDESAISKDIEIQLQAELDAR
FNDSNEQQTGHFKTASPKRAPPTGPQRHVKQKRLSDLNPLDKTKDKGLRRSSRHKPLQNLNVKGVTTLLTQVNNTDINHP
TNPQPSTATRQQVLKQRDTSIKEQLDSFVYLRENGENEYLLGKEFEFPLKDENGNAILGDDGKPLVAIAPPPSDLVGRVF
LTKPDERGEVNRARVVELIKDFEGKVEKDMNLIKFKLNYDHSSQEDIMSYNEILDYIEREQNNEDGHHWKFRTILGHVHT
PVGHKDRMGSDYNVRTAWETGAISVEPLDFLAKDIPVDLAIYAKKFDLLELEGWKRFKRIANRDKHIRRLVKQAKLRSFR
VTPKYKYGFSIPRNYKEALEFDERNGNHKWQEANVLEHAQLTDYAVFKNKGEFHDAKIPEGYRKIKVHTIFDVKHDGRHK
ARVVANGNLTDTPLESVYSGVVSLRGLRTCIFLGELNGMTPWATDIGNAYLEAKTTEKVCIKAGPEFGELQGNLLIIDKA
LYGLRLSGKAFNILLSDCLRDLGFYPSKAESSIFMRKCPTRDVYEYVATYVDDLCIVMENPREFLNQLSSAPYNFKLKGS
GEVNFHLGCGFERDSDGVLCMDPSRYIDKMEDAYKQYFKELPNQKHRSPLVKGDHPELDVTEFLDQDGIEIYQSLIGAMQ
WAISIGRWDIQSAVMSLSSFRAQPRKGHLERIKRIYGFLCKFRHFKLRFRVDEPDYSGIPPMPPYDWSHSVYGNPTEDIP
KDAPTPLGKRIVLTHYFDANLMHDVLSGKAVTGVVHFYNKTPVDWYSKKQSTTETATYGSEFLACRTCFEQIIDHRQYLR
YLGVPVGDEDYAWGDNDAMINSATIPDAKLHKRHNILSFHFVRSLIASGFINLQHIKSESNIADILTKHWGYQSTYELIR
PIFHFGGNTAALYFDDTLEVDRHITESELAEIVTTNG
>Copia-2_BG#LTR/Copia 200-4660 65.6% sim to Copia-28_BG, SW:2226, [Blumeria graminis]
QSSIQSTIVPYLIMDQSSSSVTIPRNAHLKGEENFKQWLNAITNIAESLDAEDILREDYKVPLEENIDARKIWKVKNAKL
KSIIMFSCEENGPRGLLQECSTANEMIRTLNNQFRGRGYVLGYNAYQEFISLKISDFENLIQLIIKFKSLIAQMKELNVP
LTDLHYHMHFIGLLTDSYPVWADRQRSAARNAKDSNICSLDDLIQDITDEARRIESVSSPGTVFFGNNQGAENRNQKKNK
GKFGGNKDSKDGKCKHCECPFKSMNKVKHTEADCLLNPKNVNKKKELEDKNGKNFVKWGERSHKGHSVSSQKGATFSFGE
ASAAQVVTVDTNTAMHASLEFNGWLYDTGASVHCTPVRDDFVEYRKFNKHDMMMHPLMTANGIIKPIGIGKCIFSAITSN
NVVNKIELLNVLHFPSLPMRLLSGQKYLMHGGYIGKNGEIYKNDGFEFFKLDKKMMVWVTEGLKKPAILMPVLSARNETI
NIWHKRFAHISLQNLQKTQKIVNDLPIHEVKGELSPRVCESCELSKSHRTSRKYVESRAIKALERVHVDVVQIKPQGFNG
HNYGTLFTDDATRERWFFSHKDKGGAKLAIDCIIKRFQTQWGRIVKVWRLDGGKEYGVTELKKKMDNLGSILEITTPYAA
DQDGVSERSIRTVLEKARPLIEDFKIPKYLWPEIIHGVIHILNRTATYSVKNKTPHEAFLDDMRPGEDHKPSVKHFRALG
SKAYVHIPKEKRVVSEKLTPRAEVGILVGFEGNHIYRVYVASRSKEKIVRTSSVRFNEHGLVSDVSNDSVHCIPGYKLIN
IDNRKKIVADSMNPEHPDEVITDVTGISIGSPEFADVLRNDLDDLFDQELEDEFVVRIPTIPASKSDVEESDKKRNVEPQ
ITTPSKPVRVKKKAEPLPVEKRRPTRASNKARQDIENEKAVSEASCTTAMIVVDTYAHKILTALNVYAAAHTSISDDPKT
LDEVLSGVEADLWSAGISSEYNSLHENGVFDLIRIKYLSPNVKILRGKLVFKRKRDKEGNVSRWKVRYVARGFEQMYGRD
YDQTFAGVCKSTAWKIVLAIAAMNDLDVDQMDAITAFLNGKIDEDVYFEVLPGYCVDGKIYNKPGQKQEWACKLKKAIYG
LKQAPRLWQSTLCVALAKVGFYPLATDNCVYYNNNTQVIIVIYVDDFLIIGKTAELTKLKAQLMKLFKMDNIGSLSYFLG
VRTVRNREERSITLCQDAYVKKILKKFGFEKCTTKATPMEVSALEDMVPFEGKADPQVVKDYQSKVGSLNFLAIQTRPDI
AFATGVLSRFLTNPSPQHMKACDRVFRYLAGTINRSIVLGGKGYTALHGYSDSDYAGDISMRRSTSGFVFFLGGGAVSVQ
SKRQTTVALSSTEAEYYGLTKAAMEASWIRQFLEKLGNRSKSVKLFGDNQSSLALAENPEFHQRTKHIAIKHHYIREQVQ
NGFIDLWFVPTEDMVADRLTKPLPTVKHQHFVEQLRMQDIDLHSLEK
>Copia-1_DBp#LTR/Copia 83-3876 via tfasty with Copia-4_DWil, 79.9% SW:3599, 1 frameshift and 4 stopcodons. [Drosophila bipectinata]
MNKINKMSSQYSIEKLDSDNYSSWAVQMKSLLVHSELWSIVCGREIKNESGTVAEQANFDNKDEKALASILLCIKPSQIN
YVKHCKSSMEAWKKLASVHMPSGPARKIQLFKQLLYMKMSESDSVTVHLSNFNDVIEKLQEIDQPVPEEMLVIILLSSLS
DSYENFVIAMETRDSLPSLISLKIKLLEEGERRKVGDKMDNKAEQKIYSSRAEKEKPKHKKDMKNVECWNCGRYGHVSAK
CYSKQKNARSEKDNNSVSKREENKKSFSVFAAAASQSGLTKNIWCIDSGATAHLCANKSLFVSIREHKEKIMLVGENYIE
AEGIGTVKLFWQENIIELVDVLFVQNLQCNFISVSRATNNGFEISFSKNSASVNNKNGETVLKANKQNDLFIFENKNKTA
FAAKGKTNQVITWHNRFGHLNFESLKSMIRKELVYGLRGVTGSTNDFVCETCAKSKICVKQFPKVAENRSNKVLGLIHTD
VCGPMSTVSKGGARYFATFIDDKTRYVSVYMLKTKDQVFEKFKEFMLLAEKQTGQQIKAIRSDNGREYINGAFENFLVSN
GIKRQLTVPHTPQQNGVAERANRTLVEMARSMMVHANANEYLWGEAIMTAMYLRNRSETSTLPDMTPYEAWFGKKPSVSH
LKVFGTKAIVLDKTMKRKFSQKGIEHILVGYSETAKAYRLFNPDTQTDQGSQRCGVPxARYNKNRGYIDRRIGRKRKRFW
xGDKWRSMKxRNSREPKMVKTSWLIASTEFSEAQVGLRxFVLEGQDDHVRSTICLTEYSQLQSTKTWSLVNLPPGERTIG
CKWVFAVKGDQYGNVERFKARLVAKGCGQEYGINYTETFSPVARYSSIRLVIALAVENKMFMHQMDVSAAYLNSDLQDVV
YMRQPEGFVDTAYPKRVLRLHKSLYGLKQSGREWNQKLDCTLQRIGFVQCPSEPCIYTKNNGEKFNLIVVYVDDLIIACS
RKEDLVDIKLQIAREFEVVDGGELKHFLGMEIERDGETGSVAIGHKQYIDGLLRDYGMEDCKPNATPLEVGYQNLCILED
CPRANQKQYQSLIGSLLYLAMTTRPDIVHCVAKLAQRCSDPHKEHEVAAKRVLRYLRGTSGLKLHFVRTGVPVHCFVDAD
WAGDCTDRKSFSGWAFFMAGAAFSWESKKQSIIALSSTEAEYVALSTAAKEAAYVLKLISEMGFETAPTLMIYSDNQSAQ
CLAKNASFHARSKHIDIKYHFIRDLYKKKVIDIEYVPTENMISDVLTKALCKVKHTKCITSLGLN
>Copia-1_ATe#LTR/Copia 363-4934 62.4% sim to Copia-104_AA, SW:1035, [Aspergillus terreus]
MTDRISTILSTSSDWLLWFRSIKTLALNKGVWGYINPDQPEEPILPERPAYPFPSRIQGEATSILDLSPANRELYRDLLR
EYELQMREFDHVNKGLTLIHMIIQNSISQQNKRAIINTNSAYQSLRILRDKLAPTNEARKRDVIGRYHQLRAQGSSVRSP
NLESYISQWENLYSEAQELDISEVNPPIRALYDFLEAIHTVQPYFSTLWHDKLIEKSERNEPIPTFYEVTKRFRDHIKLS
PKRNSHMANIANATFMGQSDNPNARPRIPRNRPRKCPCQSEPNDGFHDFSECLYTNQSKRPIGWSPDPEAQKRFERANQN
PGFKRAYENALQKFKTSQTTNLTVTMATVALATAQTTDSRSDWAFDTASNTHVCNDLSAFKDYTPRESKVLIGDTHAEIL
GFGTVLMKPSNCYGKQTTFELKDCAYVPKFHINILSAMKAKKAGIFYNSRVPCLEGLDGSKVCQIYETGGISLVRWGEYS
LSAHFTMGNPYKSESFGQNDLPDRFSTLELEDSRKQTNQTSQTYQIQRSDQPIISKGSIELWHQRLGHPGIKALKHLEQA
TSGAELTNQSEELGPCETCLVSKSKRQISRRPIGRGDQPFETIHWDLIHMKRGMRNMNYISHIYDPMTHFHMAQTLQTKE
QVSRSLNSMILLVKNQYRVSPKRVHSDNDLNLSEFIDQSEGLIFNTSPPDQPEQNPFSERSGGLIIMKSRLLLVDSGIPM
FLWPEVVSAATHILNRTPIRALDWKTPYEALYTALPEKPGYMTSKPDISNLKRFGCRAYTRIINIPRLSKLQPRALIGYL
VGYRASNIWRVWIPSRNKVISARDCVFDESRVYKDDPTGQLGELDPDLGLEVKALTDSEINDLINSIEAESDESENAEMS
LDLDDSRTLEDSADVLEPLENQEKEENEEYLEDSIGQDDIVLGDLPDSPPQSPVPPAPDVVIDNSQFKFDDYDDIMKPLG
LKRQRSPSPDPEPSKIPRNYAILQAFSTDLGHKKLHKNDLPPPPANWREAVNSPFRDDWIRAAEVEYQQLTNMDTWTPVS
IDSIGPDQRALPLKWVFTYKFDQSGFLSKFKARICVRGDLQPISDLDTRAITLGSRTLRVVLALVAAFDLEAVQLDAVNA
FLNSQLDETVYVSPPPGLGPKNRIFKLKKALYGLRRAPFLWQREIGETLKRLGLDPIPEDPCVYVNEFMILVIYVDDIII
IFRKENRERVEKVKQALCSTYQIKDLGEMTQFLNMKIHRKKSKRKLWISQKDYIEKIAHRFHLTNRKPPKTPLPAENLDI
SADETTLGPKEIKLYQQKVGSALYAAIISRPDIAYACQKLSEFLTKPTSRHMEAANHLISYLYGTRHWSIAYQGPIPPSQ
LGPFRVASDAAFADSAGRKSSEGYIFTLYSGPVDWSARKQKTITLSTTEAEFLALSTASKQFLWWKRFFSAIGFNPSQKL
AIECDNRQTVDLLIKQDSAYKSKLKHVDIHRHWLRQEVQNGSIQIQWVPTNQMIADGLTKRLTYQKHQEFMKHLNMEDIS
ELSP
>Copia-1_AAn#LTR/Copia 3295-9180 62.8% sim to ATCopia45, SW:651, [Aureococcus anophagefferens]
MYGIHTETYIAKGSGSFKSKKLPIEIICGCESNDSLRRQFDKDNPSVKANGLSFSCLRTMLNTLIKKPSLVNKLKNADIM
SVTAPCQGRSVLRDENKTPIDQPFKDNDLFFLQVLIAQLLLPKRIISEMTPPNKNYNKDHLGVMRMLQELNYEVTVTDRF
SSDLCGDIQHRDRWILVGRLKAKGSVLRPFSLQCYYKTRSRPLKVLLDPPEDVPHQHWLRGKNMNQIYNDPVPYPEDPTE
PNDYTFSGGTKITTWENAELMMLLERIKSNFDCEFSQFHHFRRSFQLGGTKDTKRLLCNPMIAKVWTILNNIKRRTTNSR
DHDSFIITLDGSGLGLVTAAVYHDRADVSLTQATCTYNVGCYTGGELKLPSFDESPSQSELQNICQQTFSLHSKAVARLE
DFEGVLFNISSLCSNNELSNTRTLVNHLNSVQPGCIELDDYGLMTYKDVNFELESCYLSRSSYLGYINGENVKGNKVYSI
QRASPTFTSWANILILDDRHKNRMFKGIRGLTFNEILRINHLAEEQDDFLRSIPEDQAYTYIANAVPSGMLHTVYKAVID
DLNGELDSGGVYFTLSNLVAFETPKKNTATHLIGKVMNLMFEPSEDTGHVLDNSYPEFPKVDTDVSKKRHVRTAKHDTTT
RDTTEAASKKRMRDFHRIYHCNNDVAAKTMQCTTNHRLLPGDIKHKQNCMECSICKNDKNPRSHFNKNIPTKEVKLSVGE
GYSFDGADLTHISHQGFRYVLNFIDVVSKTRVAYYVRSNATHEFREALEYVKTYSKQFTGNELKFLYSDMFSTYMEFRSD
NGIAAFRDETGITLEVCPPYMHWKNGEVESSIHECKKGTRVRLRNFAQQLARLENNRYIRETNDYWPWAWEHTCQSFNSL
ASVALEKRYGVTVTPWQYFTNDTSHHKLALQPFGEFCYSLVQKENRDGSLGEVRQPAYFLINGRMNSLKNKFADMPRAQI
CLFNDGKVRTTGSAIFPYEISDELHDGTRRIILNPALPQPPEKEAAAISDGHGWTQRTIHRTSDDFQRTLSDIDMDLNKD
PDPVQIDRQRSNVAKAHDVPRKSYVPDPSDYPDTEDNPDKPVFSPEEENSGGGADMEHGQQEEKLEAHPPVPEEPMRYGA
DGQYDHDDSDVHKGIPLECRPLPWHLRKRRRSPVQRFSFGTDIRRADSRWDDSLLVIPSIGELLEANAEVYVMPGASRRV
RAHTRYKHYRRARTLPEYFAYGGTHEDYRNDVWYGILRFLDPELYALQYSRGANWSKLSSGGEENMPKMAGEAYACYYQS
DSAAPPIVPDKSSLCDEKLLREARIQRNLVEDFQRANMLGMTHDQYHTVKYDSYSLVKNPEAHYATNYDVHDRLVDYLTL
MTNQVIENTDPDAAADLLPQATEIFLALYTVTKEDIRIDTSKLADLAKTPIEQRPKMIEAIAKEIHDLCSIGAFELVPMP
DRARPIDSRIVLKVKYRADGAYDKHKARLVARGFLARLGVDFFSTFSPMASLTAVRMMFSLAVNQGFDVWHCDIPQAFIQ
SQIDGDSYLKFPRGVTVERNGKSGDVVKLRKALYGLKQSPQLWNKALTSFFEKLGFTRATSETSLYHKTKVQSDGLRENL
FVLCEVDDLVITGSPRMVVELRDQLKAEFNISQFEPMSSFLGINIKYDKHLGRLAMDVEEKLNALFKERPILNGIGTKSV
PMRSDAKPLVKDNRELTAYLHDTKNYASIVGSLIYISITCRPDITQAVSRVSRGMHGPTEQHVVLLRELLQYLNGTKGLK
LVYYRDKHPIFEHLKASAHEDKTLLDLVPKDSYKWDSLGIIKPSHDLPESDAPRAFDPVCSKDLWGASDADHLPKMEESK
KSTTGYTFFFMGNLISWKSKLQPILATSTHESELIALNIAAQEAIWIRNLIQELNCAISGKDEPLKATSILCDNLGTVHT
SSNPVSSGRSKHIDMRYLKIREYQSSSQLEVRHIEGTNNVAD
>Copia-1_BF#LTR/Copia 112-4329  [Branchiostoma floridae]
MATCERTRLPLFDLTLKTYEQYRFEIQCWNQVTKIPKKQRGIEILLSLPEGPKDEFGTREFLSSRLAMEDLTAEDGYDKV
LAKLDEHLRRDDMGRLWESFVNFDKFQRTKDMSVSEYISRFDILYHQLNKTGDVTLPASVLGLLLIRRANLTPDESKLVL
TGLDYTKEDTTLFVQAKASLRKFSDSLVAPCTLASSSDMGAFSMPRVKQEIVNVADRVPDREVYQTARGGFTKWSRKPNK
NKSVGRGQSVQNGGAHATRDSRSGGQRSARRDSGFNPKSRNGDYLRCYDCGSIKHLLDSCPHAQVQKANLTENDAEFAED
PQFAVLFTGASKCLMSELSTEASLCAVLDSACSSTVCGLSWLKKYLSALGEKDLKHVQQEASSNVFKFGGGEKLVSLGKY
RIPAKLANNDVLIVTDVVDSDIPLLMSLDAMKKADIVLHTREDRATIFGKNVNLNLTTSGHYCVSLVRDPNIEVSEVLQV
DLGEDVSQTKTKLLHLHRQFAHPNAEKLTQLLKGANSWRSHYAAILQEICESCDVCKRFKRGLARPVAALPKSTRFNQVV
AMDLKKWRSQYLLYFVDEFSRLTVAKRIARKHPKEVVDAFMGLWMACGYGIPEQIMVDNGGEFTAEEILEFSSRLNIKVN
TTAGHSPFSNGVCERNHAVMDVMLEKLVYENPKTPIDQLIAWACTAKNAMCMFAGYSPYQIVFGRNPVLPGFETHPPSTN
DIEGDILLKHLTALAAARRAFTEAESSERVRRAXRHKIRIAERHYAPNDHVYYKRDDSSEWFGPAKVVVQDGKIVFLRHG
AYVIRVHVNRVVLSGQEYEKQTPTAVGTSPPAVNDPTTDDNGQERQNWTFPKTVDDVGDHRGFHGAGQTYDPDERRAGEQ
GGAESWKRDEHGRLYSVPTGDSESPDVLCVSTGNVVLHTKRVDINVQRARNEELQKLKDFETFEVVDDAGQERISTRWVD
TIKEDGSRKSRLVARGFEEHDHIQSDSPTISKSVLRVFIVLCHMYGWTVKTMDIKSAFLQGETLSREVLVQPPRGYEMVG
KLWKLRKCLYGLNDAARAFYMSVKHTLLQLGCQTSDLEPAMFLYQVNGTLRGFILTHVDDFLYGGDDLFEDKIIKPLSAK
YHTSRLESGTFRYVGINIVQGTDKVVLHQNDYLQGLSDDDLPTPTRESDRDLNSVEYSLFRSLVGKLNWLSNGTRPEMSF
KTIDLSTKFAHATTAHLRDAVKTVKKLQVSEGHLVYPRLHGFQDVGLTVFADASLANLQNSGSCGGHLIFMSDSYGKCAL
VAWHSGRIKRVCRSTLAAETLAMANALEEAVYLREILQTSTATNVPITAISDNKSLVQAVASTSLVLEKRLRIEVSTIKE
LVELSNVTLKWVPGSHQLADVLTKKGVTADSLLTVITTGNMIKLP
>Copia-1_CPu#LTR/Copia 38-4600 69.6% sim to Copia-1_AB, SW:3338, [Coniophora puteana]
MSAATTFATDTLPSNVPRLDAKGSNWIIFLVRFEQAAKAKRKWEHITGASTRPVPADPAAPTAAETTAVVEWDKDDDTAR
YLIGQRLPDSTAIATRSLGTAAQVWAYVVREYTQKSSFVQSNMRREFMSMSVPNNGPHGGDIATFFTELAAKKETLAECG
VVISDDEYISTILQSLPPHYATHASSFLASAKAMASFFLQSQSTTSPAPTFSITPVALMRHVLDEYERKLAEKSSRDANR
RVNTPKKDGDAAYAATHAGSSKGNSREVRKPRGACWTCGEKGHFRDTCPKSKKSDGTPTSKNTGSAHLAVDESDDDGAWL
VVHASDLSDVDDADDCASMPDLGSISDSDSEYDEDGDCWEDDVSEAAWASSFSPGVYRSTDNDTSLASSEWESDFTASDE
DEDAPDMDTAAAVATSVDGSQSREQRRAIFDSGATQHLSPYRDTLHNFTKIPPRTFRAASTSSFDATGAGELVLEVPNGT
STTQLQLNEVLYSPEIGYTLVSVGCLDELGYSVTFADGKCTIRSPDGERVAAIPRSSRGLYHIPQPAPDEANAAVERVTL
SQLHRRLGHVSANTARRMVENGFVTGLSLRQGDDRDFFCESCTYAKATRAPVPKTREGDRAAAFGDEIHSDVWGPAPVNS
LGNKRYLVTFTDDCTRHSHVYILARKDEVFSSYRKYAAWARTQHGARVKVLHSDNGGEYTGKAFRLFLDEEGTQPKLTVH
DTPEHNGVAERLNRIISERVRAMLHASGLPRFLWGEAAHHVIWLKNRTPTRALADGVTPFEALTGRKPDMRGVREWGEKC
WVKRKAHAAAGKLSSPVEEGRWMGIDQHAKGYRVYWPRTRTVSVERSITFAPLSQLEGEPTEVEFDEELIRELSPTTHHN
SESPPIPVEPITQQPAPEPAPEVHDPIVEDAPRAPRPRRPSRYVRDIQQGHGTASGRQTGARFPRGLQVPRELAELEGEH
ADVVDGEDELVAADLEELEDDELLEYALAAAVAEVEALEPRTVAEAKRRVDWPLWEKAMEEEMEALRKAGTWRYERAPDG
VNVVGSKWVFKAKKDASGKVVRYKARLVAQDFSQVPGVDYFDTYAPVAKLPSVRTVLALANRLDLELHQVDIKSAYLNGD
LNDNEVIYMRPPPGYSIPDLDGRVLRLVRTLYGLKQSGRRWYQKLVSIFVDSMGLSQAQVDQAVFYRRDASTLLIVVVHV
DDCTIAASSLAIVTHFKAQLRDHVEVTDLGELHWLLGIEVKRDRSARTIHLSQSSYIDSILRRFGLDELKPLSTPMDPAV
RLTSAMTPRTTEEIAAMRDVPYREAVGALMYASLATRPDITFAVATVSRFSSNPGKAHWDAVKRIFRYLAGTRTLWLTYG
DQPRELVGYSDADGSMAEDRRAISGYAFIIDGGAVSWSAKRQEVVSLSTTESEYVAVTHATKETLWLRSLVREVIGPLTL
DGPTTLFSDNQSAIALAHDHQYHARSKHIDVKYHFIRWIIEEGSMRLIYCPTDNMVADALTKALPSPKVKHFASELGLRE
A
>Copia-1_BFB#LTR/Copia 433-5949 58.9% sim to Gypsy-26_BG, SW:2113, [Botryotinia fuckeliana]
MAGVFPESPQTERYVPENPASSAGSKMASVIATEEYEELSRRWTDHPIDIQSANAKEIRDFVKYKAYEYQRQKYYDQELW
ADYNLAFDGFTPAHFSQVSMRILYKLRHELRSCGVYVDKPEECTTRPVYEALVDTHRSPYRAWTPKEIIEAISEKEFVFR
SRSIQQRIVIEKLRAPLGDPEMSRVKDLHAGPSGFNTYVLPQLPSISQRLERADKGKGVDIEHKVSIEPQPKTPPQPKTP
PQLPSFAPGSGSIARKYYSPRKPPPLPTFQGFTGPPPGPPRINLEQPSGASPFYHNNQPSQQSPQQWEQHHDQHNPNQQY
MHQRMHQSGHPGGEPSGSNGGSSDGGRGNGGGGNGGGYDGDNPEYSDGIQNDLPRIPQRAINVGQLLGNLTKLYEKADKY
SGQDDNFTHKYSIFINNCQRIDLPEYLLPKAFPTMLVEVALDFYHTNLGNIPDTIEEICRMMETTFEGPEHRRNLMRQWE
GITLKSVMAEPDNAGKSMSHCLQSMVMKLRHLHKGLSPTMRTDELLHQKIVNACAPVSACSIACFRPAKDIPSLLEELRS
AIMTWEQSHANETTTFYTDRKYQRGRGGYSQRSFGHNDRRPFKPRTKKKCFVCRKEDCWSTRHSKEERDESRSKYKEQFK
DRNNFDKSFEQFLVEYEGPNQDDDEDTDPDTDSEVAAYFAQFELQESPAQEPHSSFITHTGPINGRETMMNLNNKIFEHA
LTRRVRKERTTYISRYDAREFQGIIVDTAAAEWSTVGYEQYMAYKTTVENVSLDESRAGVANVVFGIGRAKSIGSFHLDL
PPGTVEFHVMNAETPFLLSLKDMDKLGIYYNNIIDAVVVNKTGRSFPCVRRNKHAVLLWRINVQQFVQQTIDDNECYLTD
IELRRLHRRFGHPSAHRLLRVLQRAGHSDVSQQEIDKLTKFCQYCQKHGKSPGRFKFSLKDDVDFNHSIIVDVMYIDTSP
ILHVIDEGTRFQAAQWLTNISAKHTFDTLRKCWMDTYTGPPDYIIHDAGKNFVSKEFIQYAATMSTKTKSVPIEAHWSIG
AVERYHAVIKRAYAIIASELESSTTKEMMLQMAVKAVNDTAGPDGLVPTLLVFGAYPRMADLDPPAPTVLQRQSAIRKAM
NEINKLRATRQVSDALSQRNGPSTMALYDLPINSKVWVWREHKGWTGPHHLLGIRDQICTVKLSSGPTEFRTTQVKPHVQ
EEQDRPQGEPEHIEPVQQEDGGTILPDNPDDVTSQEGREGMQPPPSTEEPPSNEPNGPQARSLLQGRIPPIRLLRAHANA
QHFFSSESEEHETPPSLALYLPDEDEIDDIEYTECYAASAVPPTSTIFVESRRKEVNGLMENGVFRLVKLVDVPENTRIF
NSRFVDEIKNEGTDKAFPKSRLVIQAWKDQGKSAVLTQSPTIQRVSQRIMLSVMAMLPKNEVTMSIRDITQAYTQSASNL
VRKFYARPPAEMDVPEGFILQVVRPLYGVPEAGNHWFSTYHKHHTDALKMVQSTYDPCLLHTTKDDTAFGIVGLQTDDTL
IVANKEFADREQTELKNAKFMAKERETLTSSTPLKFNGGLITQHENGSIYLNQQKQCENLRLVKTEPSDMHGTRGKLRKS
ATAKDQYVAQRARGAYVATMCQPEAAFDLSFAAQTVNPKEEDANTLNKRIQWQIDNSERGLQFVPLHMDSLKLVAFTDAS
FANNKDLSSQIGYIIVLMDKYDKANIIHWSSIKCKRVTRSVLASELYGMVLGFDISAAIKGTVDKIFPARKIPLVICIDS
KSLYDCLTKLGTTNEKRLMIDVMAIREAYEKREIVEIKWIDGESNPADAMTKSKPCQALKDLVDNNTITIKVTEWVDRD
>Copia-2_MVPL#LTR/Copia 19-4229 via tfasty with Copia-106_Mad, 55.0% SW:991, 1 frameshift and 1 stopcodon. [Microbotryum violaceum]
MSSTGSVGGPGQKNESHCTTIGMDTDSPSTETSDRGLHVPILRASNYMDWRRRLIGRLGSKDLHLCASRPLSDAAKAVLQ
VAINDQSRGFYSPLERLDFAAMDAKIAKELMKEVxTQAEIIQFLDEANLRLVRGCYTSYNILDLLNTFYLGTMSAQISAL
TTELYARKFSSGDRGQLLHHLTTIQGILQDLEACGSGMPPAQQLTLMLDSVFDPQHESFTSSLRRPLALPSEIVSEARSY
QFKVSLESRINGLSAMTSGRAMAPSPVPALVAQGESQKGARHKRRLKKGNRDGQGNRRPTDSTCHACGAKGHWSCDAVCP
EKRSKSSAAPALVAMNSYSVYLAGSSSRAPDADFVWIADTGAGHHFVGDCLLLSDFKESPIQVQMADNSLGQATGYGRMS
VKASQGHLLNFKEMYYLPGSKYGLISMSSLRAGGAKLVYGHGGDTQQVWLDGSLVAETVKTKAKQPSYVFDFEIVSPPSP
VLVAATRASVGASLMEWHWNFGHMAPSSILQLVKSKAIVGIRLLDKKIEDCEPCIIAKARAGSHKHFSQKPGHVLQRVSI
DLGFVNDDDTNGRSIYTVIVDQLSTYKWAFPLGSKSASEVLKVWRGFQAQVERQSGQKIKFVQSDNGGEFEVFFGKQPDV
SHLRAFGSTAYVLVPKAIRKKLDDHTVKGTFLGHSGEYNYKVRVEHRRSFKIVVSSDVTFSDKAPSIADSAVEPRIYEVE
PIQEHELVHQLPFPGLEQISALRPALVPELGPAFRPAPAPLLRFQDMDDDDVAPPPLPAVGPLAEDAEVEEDPIDHRREE
AVEAIDSDDDNGPAEHDQPLPPEDGYEYRPYRVGRNPGALENVDAGNILPTRLRAQRRADALRVVSTRSVYRHPPELIAM
VSSCHTPLPKTFAEAIASSEAKHWMAASEKELGSFKLHKVFKLTRLPTGARALGYRWVFTRKEDAEGNIISYKARLVIQG
FAQRLGIDYNETFAPVSSITTILFLIAMSAAVGLVLEQFDYDSAFLNGIMEEDICMKVPEGWTGGSRPGHALKLLKSMYG
TKQAPRQWNAALHKLMTDRGYTRSNVDACLYFKYHGKSFAIITLYVDDGLAASNDQAFLDSEISAFDAVYKLKRLGPVKT
FLFVRTKDFIFVHQSKYIRGLLEHYTFENKSKKPVATPMEDRVISSSTAPFSDILVYQSAVGALQYAAQRVRPDIVTSVC
AVAKCVAAPTEGDWICVKRIFRYLSDTVDYGLLYRVGGSTKFEVYSDASFGCDHNNGRSVGAYVVIMAGAAISWKSKQQT
MVASSTAESETLAASTAAKEAIGLRNLASKLRINQGQSTVLHKDNQPCIDLAKNPGARGRTCHWNVHHFYLRERIEVGDI
DLRYCPTNLNTADILTKPLSKLKFSTHREGLGMVSLATLACGSV
>Copia-3_TMe#LTR/Copia 155-4666 via tfasty with Copia-2_PPa, 62.3% SW:1710, 2 frameshifts and 5 stopcodons. [Tuber melanosporum]
MPIDTSNNEYTEKRFRCPLLTEKNFPTRERSVKMRLIAENCWEIVIGEEKIPDPPVLADGSSRAMESAHATALKEFKSQL
GDFTRRSGKAASIINSTLSPSIEFYVKDTINPKEMWEILRNKLTLVDNWSLQCTLKRDFYKLSYDGKESITTYINGLRIF
QQQLQGTNNEISNDELVNRIITSLPASWEQRIITLDDxRDLTLDDLERTLHSHxAKIANTTTQATKAFVVTKGFQRGRGR
SHGGRVRSNRMNNRIRPDRNPTTYWYCLKVGHSQNDCFIKKKADEARRDRTRRPLPKRLDFCGDSADAASANATTHALIM
KRISVKHFSETWLIDSGTTDHMCPDRMDFSSLxRLNTPIRIVLGDDTLLHAYGAGSIYLSPQILLTNVLYVPDLEIKLLS
VSAMTRSKCxVIFDESGCHILKDGSKILSASECGNLFKVNLPEVYYSLATVYEGSNQNRSTMMPINDSCKREDVTNTHIE
IKPPQQDLQLWHEQLGHMNMSDLRRLKSLSTGLTIKDHGSPLAVCPACLEGKQQRSFNRKNKSAHVSEKLGLIHSDSCGP
FPVPSMASARYFILYVDDCTRMVWCYFLKQKSALEVLEMFKNFKVLIKKHSGKSILRFRCDNGRGEYDNNYFQEYLRSEG
ITYEPSAPYTQHQNGVSECMIHIIMERTRTILLKSKLDVNFWAEAANTSVYLHNHCPTKALDGQTPYEAWNGTKPQLQHL
RRFGCDAYVHVPAERRKKFDPKSRLCIHLGYIHNTTKLWRVWYSRTRQVIHSRDVVFDEASFSGHVQPKASSPLSTLLID
GVIDLDDTSYTSGLLPQSIPDDTQFNLRSRNPPEVDDTSVKNFMEVIEERIGDADAPTPVINADCFPIPTSESTARSISI
NGMAPEEVEPMISHNMAPDGHQHLALRKSSRARKPSFWLRDSITFAARASVYEEPQTYQEALEQQSYRHWENVIREEFAS
HAENCTWELAELPLGKHDISCKWVFKLKTNTDRSIQYKARLVIHGFEQVPSIDFQETFAPVAKFVTIRVLLALATQYDWE
IEQMDMKTAFLHPALKEEVFMTIPEGYLDYSDMLTLVGEYPVLRLRKALYGLKQAPRAWYDNINHFISSIGLLQSSEDHS
LYFSDxIIVILYVDDLSLFAKVMQVIEMMKDKLSTTYHMTDLSPITQFLGLQVTRNRPLKIINLHQFSYTQSIPKRFQMS
DCKGISTPMEPNFNLPSCLDDSDIHNQSSYQSKIGGIMYAMLGYRPELAYTISSLSKHNARPTSLHHNALQCVFRYLQKS
KAIGIRYQGTENNVESFPKLISHTDSDWAGDKDDRKSTGGYVIMLCQGAISWKTRKQDVVAMSSTEAEYIALTEAAKEVV
WLRRLLIELESRHIAYVIPNITAEHFHGLHKQWESLDTAGKTPEQFPRNSWISTISQTIYADNQGAMKLADNPQLHSRTK
HIDIRYHFIRTLLERDEVTISYIPTAEMTADMLTEALTREKHERHTKSMGMIDLADEIEGKEFL
>Copia-3_PTc#LTR/Copia 120-5933 64.4% sim to Copia7_TP, SW:1621, [Phaeodactylum tricornutum]
MARVRKATGPTRKGATETVPEERVEEETPFEAVESPSKDSDNETQPSSMGDDDDSQSEIESYKIDTDIDFKYNPNFFEDK
KALESVLRNTMGFGDIHVKSLQNEGLKTANDFLLISMSDINDLCDKLLFATVYRARLRAFATWLRSQPDNVNITQEWTIP
VMQLEMQMKAQASPFGTSETNKTDKSVSSLVPDPFDGTQKKWLAFRYSFEAWAGASGQSFDACISHDSERYSRSEPTATY
NDINDEPDSFKYDWNVKSVRNSNIFFMLKSLTSGGDAWGLIEPYEVSKNGRHAWIALCAFYEGASQVGLTTEEARTTILT
SKYTGQSRNFTFTKYVQKHLTGNNILARNKEAYTDSQKTNFFLRGIVDPELMAFKAAAEANLNEWKFERVVTYMRTQAAK
LTSKDGKDSRNIRQATGLSKNRNNKNNRRKRSEYQSQGKGNKESGKGNNAPSTQLRKDIWDELSPEIKDAIKAAKRRAST
DPRTAKRAKTSSTDNSNASVESYSPDLRSMSTEIFKADDDKDLASGQPEAKDTPLHLELEDTLKKPTYGAGTLFGRSADR
VSFNRMVCSSEENKVTPWRMSELRLADATIRRICKNRTRNPTGRSTWGEAAIDTGADTICIGSGYTVLAHTGRYVSLRGF
HDSGDTLDRIPVVTAATAYDYDDGTTVILVFHEALNLGPTQSTSLINLNQIRHAGHQTDDIPKFLSQGKSLHGIETIDGD
YIPFELKGRTSLLYSRVPTRHELENCLHIDLTSDQPWDPNSKDWEDNEQRYTRHDRQRNARYTATDNADEENFYHGYFSL
PDSKEFPVLPANNNVMNPHDVVREIKYATARVSKSSPRDLDVDRDKLRRILGHVPMEVVDRTLEATTQLAERSGKMPLHR
RFKTKFEQLRYRRLKCTLYSDTFKSTVKSSRGHTHTQGFVCGDSYFVYHFLMKAESEADQGLASIIQDIGIPAQIHTDNA
KVETLSKWKKITSGHWIKVTVTEPYSPWQNRCEHEFGAVRIQTRLVMETTQCPEQLWDYAITYVVIVRNNTARKALNWQT
PLTVMTGDTSDISELLDFEFYEPVQYFDNPEIKFPQAKAKVGRWLGIATNVGQAMCYYVLTDKGTVIARSTVTPLHKVDS
TALQTSLTAFDAMIREIYQPTDFAHSTKKQAASLRRDEAMKVARKTGEPEDPGVRNRHVLYDLNEGADHDQVEPGLSVDD
YYGNDDEKESGSSDLLVGSEVLLTKGGIQHLGKVTKRDKNGQPKGSNETTNYVVEFNDGTEEIHGYNALLDAVYKQVDDD
GNEWYTFEDIVDHQRRPRGGRGRTKGWFLRVKWANGEYTWEPLTSLKESNPYPVAKYAADNELMSEKAFSYWAPSVLTKA
DRWIRAARTRKKKNRYKYGIEVPRNVAHAYELDKQNGNHLWAEAIQKEMGTLQKMETFTILSKGERAPKDYKRIPMWIIF
DVKMDFRRKARLVAGGHVTDPPTDDTYSSVASRESVRLGFLLASLNNLDLVSVDIGNAYVNADCREKVYAIAGPEFEEFE
GRTVIIAKALYGLKSSGAAWHSHLAQSLRTMGFVSSKADPDMWYRAAKRKDESEYYEYVISYVDDLTVVSENTRAILEML
ENIPYTLKGGSAPETFLGATIGTYTFKDGTSAWYMSAQQYLTNAIKNVEETLGLKLSTSNRIVTPLIPGYHPEVDTSAFL
DDDRANFYMSLIGILLWTSELGRIDITREVGLMSRFNAKPREGHYNAVLRMFGYLKRHLNSKLVCDPKMREFSQVKFSDP
TWKEQYPNAVEELPPAMPKPMGRSVQITVFVDAAHADCHVTRRSTTGVLIFINGTPIRWYSKRQNTVEGSTYGSEFVAMR
IASEMIIALRYNLRVLGVPLCGPANVFCDNMSVVTSSTIPSSVLKKKHDAISYHKVRECVASGTMRXAHEPTGSNLSDML
TKCLSGPQHKFLISHILF
>Copia-4_Mad#LTR/Copia 170-4879 via tfasty with Copia23-PTR, 2 stopcodons. [Malus x domestica]
MAEEHKASLIPVHTVSNQGESTNINAIPFGYRLSDSNFKVWSKMMKVHASGFGKLGYLTGKIPMVEEDDPGYAKWSIEDA
IVRGWLLKTMEPHLLGLFIDLPTAKDIWESVTQMFYDGSDESQYYELRCKATRTRQDGRPVNLYFTELKGVWQDLDKRRP
LRMVCGADLRTRKEEIAKDRVYDFLAGLDSGFDQVRSEILRIKPIPGIEECFNLVRREAQRQATMMGTKSITAGPSMAMA
TKVQSYRSPSFGNSRSSRTQEDIDKDKLHCNHYNGTRHTEETCFEIHGYPEWYWERKKELKAKGNKRTSGQVRVAATGQG
MTAHVSGHVGPKTQQDKAGSSGIAAVAAGQPRPNVSHLATTEAQSAGRVLEATSKIDDSGPLLSLINQISMHENSEDSGK
IGTVLILSTKRDTGWIIDSGATDHMTYDTSLFYHMTTPSKEDVITANGDIAPVTGAGSISLTPSLSIHNALLVPSLSNHL
LSVGQVTEQLDCVVLMFPTFCLLQDIQTRAIIGRGTKRRGLYYVDDVSASRVNQVRSSQSNKDKTIWLWHRRLGHASFGY
LKRLLSSLFCGISDSDFQCKDCILAKSHRTSYHLSLNKRTVPFELVHSDVWGPSPVATIHGVRWFIIFVDDCTRMTWLYN
LKHKSEVGKNFQQFYHMVENQYSLPLKVLRSDNGGEYLSTELSQFFQDHGILHETSCPHTPQQNGVAERKNRHILETTRA
LLIGAHAPHSYWVEAVKYAVYLMNPMPTRIHNFRTPTEVFADHVTLTSSLQLLPRIIGCVAYVHLHKNQRSKLDPCVVRC
IFLGFTGQQKGYRCYHPPTKHTYITMDVTFSEHEMFFVTDHTNYNLQGELNTHEDYSWIDLPTGQPRETQQDACHGTGQP
RETxQNACHANSQQGRLLPSGEIHGPEPISVGEAPSLKGCAAASETIFGSGPDGMATGEQFGAQPSARLETPYQGDSELQ
PLVHSLDDxYTSRNKSSPVVPVHVPEDIHEVSLSQPNEARDLTNIESTYVLPSRQNRGKPPDRYSPDGKVQYAIANYVST
HRLSSKYQAMVNTMDGIKILTRVEEALLDSRWTKAMEVGMEALQKNRTWSIESLPQGKRPVGCKWVFTIKHNADETIDRY
KARLVAKGYTQTFRVNYQETFAPVAKMNTIRVLLSLAANFDWPLKQFDVKNAFLHRDMEEEVYMELPPRFEVSNRTGKVC
RLRKALYGLKQSPRAWFGRFTDAMKKYGYRQGNADHTLFIKRREGKVTLLIIYVDDMVVTGDDTEEMKKLQGHLSLEFEM
KDLGGLKYFLGIEVAHSREGIYLSQRKYVLDLLSETGMLACKPAETPIVQNHHLAIYPDQVPANRERYQRLVGRLIYLSL
TRPDIAYAVSVVSQFMHSPSEDHMAAVMRILSYLKGAPGKGLIFKKHRHLEVRGYTDADWAGNVTDRRSTSGYFTFVAGN
LVTWRSKKQNVVARSTAEAEYRGMAHGICELLWLRILLTEIGFKPHGAMLLYCDNQAAREIANNPVQHDRTKHVEVDRHF
IKEKLDVKLIDIPFVKSRDQLADVLTHAVSSRVFQDSLNKLGLGDIYAPT
>Copia-4_TMe#LTR/Copia 141-4733 via tfasty with Copia-8_TMe, 59.6% SW:1479, 3 frameshifts and 3 stopcodons. [Tuber melanosporum]
MSEQDGIPLGKSGMMIEKLDGTTYRMWSIRMGAYLLREGLWDLTSGVEEIMIAPAKESNNFKEDQQQYMNQRRRIQKANG
DLKLAMADSIIINYNESFWDMPQRIWDDIKRNYQVxVSYDANHLQVGLYECQLKECGTILNYLNKLKDIKDKLSLCGQIP
TMSQMIFHVFHRLPKTAEWKAWTYVMEPQFSTTITNSDYIRLQSQLKASEAKFKRDKSIEPGQALFASSRSSRWKQPNED
SGNSKSNTRHSxPTSSKQFTRNCYKCSKKGYRERECWSKGTSRKKKGGNLQSRNTDSVGMMDEQMWMTEDVENWKVKATQ
QMTVGGLGEQVVAGAARRFCSVMTDTRNVDSSDLGLTTDKALIDKAWIGDAEENEGIWVLDSRCTSHITNHKDLFLKETF
RDLPRGTRHIKTATGKVVPAVGIGNVQLPIWIPERGRGTVQLCDVLYVPDAGLTNLISVLHLVEKKIKILFTSNIIEVYK
DGLLSAIAIKSNRMFTLVTREIPIEAAFIMSDSTQLTLWHKRFGHLYADAVLKMSNKQLVNGMPVIQSTNGRHRCESCLE
GKMTRLLFRRAEHRTSAPLEIVHSDSCVPMKHKSIGGSSYFMLLIDDYTKFTAVYFLKKKSEAAECFKNYRTHVEKVHSQ
NGGGYVIKTMRTEGGGEFTGATFLRELEKNGIEAHTTVPYTPQEDGISENRNRVLIGRANALLKQAGAQNSYWAEAIQTT
AYLKNISITKGTHGMEATPFELWFGKKPKVEHLRIWGRTAYAYIHPANRADKKWSPRAEKLIFVGYTMMTKQFSTKILHF
FNKQRTVYSCRWKISEEKVQPITMKPQHTGPTTRSMARAKREEEGEASSKSGSWSSSRTRRCAGRExLRSDYEAPNQVPV
RKGVTVTGSPPVEGDPVADYDVNSQDALAQVEHTWRKVDSLHSKLDESQPRNERRAQASVERQRIFELNSGTTGGVAGID
ELAKRRQDDEDDANTVFEPDLVFMVNDGPGSIEEALRCPGHDHWINAINNELKSLENHETCGVIDPGSLPIEARPISSRM
VLQEKVGEDGKVAPYKARLVACGFRQKPGIDFTETYSPTISYAVIRIILFKVAAEDKEITQLDIVTAFLESRIDEELYLK
LSKNSFMTKDGSVRLMTQDSGRKVKKPDTQIIVKLKRSLYGLKQAGHNWYHMLETYFIEQMKIKPSLYKAGIYVSDTGAM
VIAWVDDLLLIGKKGEVTEIKNRIRAAFQVKDLGNVRFFLSMLVEHDRDKRTVYLSQQTYLSKILTRFSMEHCKGCSTPL
DPKIKLHQRTEVEESANLRTYQEVVGSLTYAAITTRPDIAYAAGLVGHFAANPSTLHWQVVKRILRYVQATKEYRLLLGR
GASKQTSDLVLTVYADANFAGEIDGMKSTTGFVIIDPYGAIVNWKSLKQRTMAKSTADAEFNATALAAEEGIWLQKVQKE
LYPSIYWKQEEKERPHIRIFYDNQACIASLTNGKFRASTRHVGVRYFWLKEIVEKGEAEIEYIRTDEMVADGLTKSLAKT
KHEQCVAMLGMY
>Copia-4_PPa#LTR/Copia 703-4801 via tfasty with Copia3_XT, 1 frameshift and 17 stopcodons. [Physcomitrella patens]
IEKFDGDNWHLxKEKIxFVLIDKDLWKVVCGKYKKPIGSPIDLEELEKWEDIDQRALSVICLHLTGTEFLTTSKAESAQA
AWQGLEATYEVKNTSSLLYLICRFWTMQMSEGDNIVMHIGKLxEMAEQLSSIGEKVFDTYFVMALLESLLESYRTLVVIL
GTRPPAELTLQMVTTQLLQQESHNKNVGSTFKVALAVERKSKSHSHTHTHICRVFTxSQKDVKCKYCGKKGHYERECWTK
EKDKKSRKLKKTFQKEQANTIDKKDRKDDESVFVAALSVTMSDKEWYINFGASQHMTRNxSxFSSYKNLPQGPKVYLGND
TGLAIKEKDKISFQFPNNICKDVHDILHVEGLAKNLLSVSKMIDQGYKVNFNADTCLMKxDNTTIKGVRHGSLYKLLGSL
DEDKKTFLVTETKQTLNKADLWHQQYGHLGILGLKKLQAGDMVTHLDIGKDTKLEFCKRCIYGKQHRDAFPTKGGTCATK
FLELIHSDVNGPMRITSHRGTKYFVTFIDDFLRKTFVYFMKQKSEVLDNFRIFKALVEKQTGLEIQKLHSDNGGKYTSKA
FKxFCEQHGIERxFSMPYMPQQNGVAEYKNWTLFESARCMLQHKQLSNAWxAEAINIATYVLNRAPTTVVEGKIPKEVxS
SIKPSIQHLCIFGCNAYVHVPDEKCTKLDPKSKKYIFLGYVEGTKCYHLYDVENGSIIKSCDVKFIECEDSKQIEGTLEV
SIDKPQEIRIKIEPMESSSDSKSDTEDTMGDLDTSKGHQQPTIESSSSVxDIQIQARALGQQHAALNPPPIPPPPPPSPI
MMCARARLLAQQQVTDESTLAWIPSKSFISLAYMAHAFYTSTKEPATITEAMGRDDTWKxKEAMDSEYQSLIDNKTWTLT
PLPANKKSIGCKxIFKIKYNANGSVEHYKARLIAKGYVQKEGIDYNETFAPVAKMTSICILLALAAVEDLEVHQMDVKTT
FLNGDLEEEIYMDQPKGYILEDEExLVYKLSKTLYGLKxSPRAWYKKIDDYFASQSLKRSHADPNIYVLWTTNGFFIIIA
FYVDDLMLVSNNKELLLEIKKNLAERFEMKDLEEIHYILDVQIMKNQKICKIYLNxQKYVENILERFGMKDCKSLATPLD
SNSKLSRDMSPQIPEEVEAMKEIPYQNAMGNLVYAMIGTWANISYLVGVVSQYMANLGPQHWIAVKCILQYLQGTSDHVL
QYGGSSLSLQVVGYYDADYARDIDTQCSTTSYTFLLASGAISWNSKKQPTVALSTTKAEYMAATHATKEAIWLQRFFKDI
GFSQDGPLTIFSDNQSCIFLSRNPTFYACTKHVEIQHHFVCEKIESGNINLVFCGTQDMVADVLTKGLTREKHCKFKEMM
GIIKLS
>Copia-3_MVPL#LTR/Copia 50-4138 via tfasty with Copia-6_SMo, 60.9% SW:1358, 2 stopcodons. [Microbotryum violaceum]
MSTPLMVTGGTTPIVLVKPRDVDPSCHLRNAGGWSQWIDDVRGALGGDYWNCTLATPVQSPNTRTDLDHANFQAVALLMR
SVSPDIRKHIKDGYDHTPAEVLQMIKKAVGTGTVADILIRLQALLDVGPPPTGMDAFAKYQATTIELFNTLSGHELTFEQ
IVSFRLVHFGKDLYREYYTQTLRQGLDRLPSPTEVLQSLHTQADQTPAPKPVAMVASPIATADKSTAPPFSPCHHCGGPH
WNHKCPDNKAGSKGKKTKAPSAPSASLVTAPDISTLVDGPVLGYLTATMSTLARPSIILESGATHHIVNNCACFTSFRKC
KPAPLESITGEVVNSIEGVGSAIVRSFDGSIGQLNGALFVPTAPVNLFSASRADIGGNDIRLTRAKATVSIADTVCHTGE
LKNGLYHMQASLVDVAALVHQAGAFPRALMAVPMSVLHGRFAHLHPRALRQLISTEAVSGVSMEVDPNEDLKCDTCQAGK
ITHHPFPAVASNCSAQPLEQVHMDLLAFDGAVSLGGARYALVIVNDHSQYLWAIPMSHKSDTFAAFKSWLAKVERSTSRK
VLAVRSDNGGEFMLNKFSRFLEEQGITRQLSIPDTPQQNGVAKRANRSITEGVRSMLHQLGLPHALWAKALATYIYVKNR
SPHSANSGTTPHTHWYSSKPSAGHLRVFGCRAWKAATTEPRSKLNPRGIPLVFVGYDLESKGYRLLDPNTRQVFKSRSVT
FFEDNFPARATGIRAPPLPAAGDDNSGVVIIPPEHVDPPAALRFDAPGPAWQPPAGPRVCNPPAQYGALASLRSTPSAFA
FSLGNEVVALVANLAEAGINVSKADHPLSEPEDPFTFPTSDPSTWKEAMRHPHAEGWKAGAIEEFRLMKDDFKVFSVVDL
ASVPRAATILPSRHVFRTKRDKAGKMVSLKSRIIARGCAQQAGDFDETFAPTAKFTSICVLVAHAASRGHHIIQADVDKA
YLHGVLEEEIYMRVPTGIxGYDGKCLRLHRSIYGLKQAGRVWNNKINTTLANLGYHRLACDECIYRRANVLGDHYIALYV
DDLLFFGPDLGEIDxVLDQLNTLYGVKCLGPANWILGVQVVRHDDGGITLLQRQYLVDVLACFGMSSCNPCKSPMEANLQ
LLPKIDPDEADNSTYRSMIGSLMYAVVATQPNLAHAVGYLSWFVGKAGAAHLEAVKHVLWYIKGSLDLGIHYMANNKPLL
GYEGYSDSDWGSDVNTLRSTMGYLFKLAGGTILWSSRLQSRVVCSSTEAKYLGLSHAAKEAVFLCSLLTKLGLDTSLPLR
LLGDNQGAIALTQNPVFHACTKHLRMLEHFVREHVRNGEILVTYIPTHDMVANIFTKALPQAIFQRHCALLAFGKFQAKS
KGG
>Copia-2_VA#LTR/Copia 377-5239 55.1% sim to Copia23-PTR, SW:777, [Verticillium albo-atrum]
MDSGKHRVTLTRREEWRTWLNSVRAVATSYEAWDLVDPDKEADRRPKRAKKPTAPSFEDETRDLSTLLTLYKIHLDIYNR
ESAGLQEVQKYILNTVDRSLSAVFMNEESSQEWLKALKDHFAPSDMGQKQYIRQRWEEHMAMIKKMDHEKWVDDFILLCI
EVEKHGIPQLKEAADQNVQFLRAILSVSPGWAEAECAHQVRRELDDRDGGKVLALRYKSYLRDYQPHRLTTKPSQTSFYS
DSVTFMGKDRNGQSDRTSAQDSHRDSPQQPNSSPSRRPFCDCVQQKRAPKACQPICLCPNIAEHRRKKSYQSDQSLLDYI
DEAKKRMKPSTLQFWNEKIKEDKKKRQEARGTSGVAVSAFNNFLGDDDEQSCDDEYTNFMSNFSVADSDEFQRTNRGGDL
RHEFLIDSGTPNHITNNKDLLTNFREATDTVRYSTGGGKSSPVEGHGTMAIDTLDSKQNVISITCHDVSYIKDYPTTLIS
ARQLQRQGLGLDSLRNMLFNPATGSEIPLQEKGGQYAVNTLHSTTSFYHSKKQRAAMVSDSRLWHERLAHAHPEAIQQLP
YSCTGVGVKGPTTFECESCGVAKSKKIVSRRQPTYTTTNPFERVNLDFFSPGKSYNGMESCLVITDAYSGKIVVRILPAR
ADGFQAFINFEMFLWRQYHLVIKVLRVDWDSALRSNLVTWSEERGILLERSAARTPEQNGAAERNGGTIFTIARTLTSAA
GFPEDLWPEVVQTAAYLHNLTPKGRLQWATPEGRLNDWLNSKGLAARTTAPGLAHLRRYGCRAYPLTADAQEGRNRKQKL
APRAHIGYLCGYDSSNIYRIWAPEMKAVLRTRDVGFDESTVFKDAQSPKPILQDEFQALDVPVADAQNPFNSSLDIDEFD
VATIDLFEKARTFQLGGKINAEILRPREGHTASRDDVLPSPRPTPETETGQGQPAVSEGVEDAVIDTIQGAEDAVEDTIP
VPDTIQVTEEAIEDTIEVARSPESTPQHTPADQSSAEDETETVEARPSVAPAPQPSPSTQIQGTRRSARDRKPSQFKDGT
PTDQALGARRSKKMPPSSHLTVEYSFFHTQTPSNKKPLLRTDMPAEPRSWKEMLHSDHKKQWLEASVQEVNTIENMDTIE
QVPFESVDQEIHKVLGLTWVWKYKVDSTGYVTKFKARLCVRGDQQPKNEMETYASTLAAKTFRTLMAICAEFDLDTHQLD
AVNAFPNAHLDETVYVWAPQGWDLMQEMQQKKGAPQRRTIFKLKRALYGLRRSPLLWHKLLSEAMRKIGLVALEEDNCVF
MGRGMIMFFYVDDIILMNRKEDRQAAEELKSQLKSLFEMRELGEVRWFLGIRVVRDRSQRKLWLSLENYITEKMKDLNLQ
PSTRGHLTPLSTDPAPAPKDYEASAESIQLYQRKIGSINYAATTTRPDVAKAASRLAESLLRPTELHHLAADHCLRYLYR
TRTLSLSYGGSGDHSTSLYCASDASFGDDPITRFSSQGYTTMLFGGPIDWKATKQRSVVTSSTEAELVALSVAARNYLAT
LRLIKELQLRFHGKVPIQMFCDNRQTLLLLTSERPQATTKLKHVDIHRLWIRQTVRQGKISVDWMSTDKIVSDGLTKILP
TQKHQNFVKLLQMECVPAVHQ
>Copia-2_PSH#LTR/Copia 305-5572 59.4% sim to RLG_scAle_5_1, SW:1278, [Punctularia strigosozonata]
MSSSKGSSVVDLVPIFNGTNFVMWEQSMKAYLMQQGLWHIINDARPDTPASGDEEAVKIAKEDRQRSYDEKSDKALGSIL
LRVSESIRQTLKDQDEPDKVLDLLRRNYGQQRVGNAYSDFVSMQRVQIPDDKSPVPALNELQACWDRLQQIKVRPSTGKS
SDPSTESLPKWLFGMMLLSKLPKNLEVVRQNHANTDPAQIDPETIRTAVISAWESNSLRKRSQPPDAKRITAIKKKNGDK
PFDAQLKNNRDNNSGSSGSNQQSSGSNNKKRGKRGGNKKKNHSQHTHIADVDSEDGMHVIASGVSHIASVASVPTPGVPG
PTDMRMHRPVVKSSGKPSVYRDVQAGFEIAHALGIPTTSNTLRNIELDFNAAKSSLPPPSQEEWHAYLEERADFRLQTYG
NAFSDDDDVDDFYPPIKKMRLEDRISEGSSDSFMQSIGSAEVADTTGAPTLTGQAAEGSSSEQDIAAPIPVGCQSLLDIF
ADSDVDMVSTGHVEIDDLFPFGDQFVEDASALPEPAHWADRPWADDGYVPLTHMSALHDANVLFCALRNLDACKYYIASN
PCCNDRNDMYPHGLTYAACAHCKGKRKQGTNPKLEEIRRTWMLDSGASLHITGNMDDFLDFEKFKPSERIPTLTANGVVF
IEGRGTSVLRYNDIWNGPSVVRIGPVYYLPGLLGPLISMGTFLKQGMKVRGDADHITLTENDKPFMAFPVRRPGDTVYAI
KTLNPTVGFIGVANSVDHGVMHRRFAHAGRDALRHARDHTLDFPEIEFPKKDPLCRGCAQGKMPLRPFPENPRRANKPFE
LIHSDLKSFPVESYHKFKYAIIMLDDYTSYAWIVCLRSKDAATTAIKQFIAMVKNQHSATVKHWMSDFGGEYKSKALSDY
LRSQGIEIHESAPHTPQQNGRAERFMRTFMDKAEAMRHDACIPQSWWEFAIEHACHVYNRTPLRRHQWATPHEKLLGEAP
SVKHLRVFGCGAYVHIPTDVRANKLAAKSELMTYIGVHPGNIANFRFMRSPNNVVFTSAHALFDEGLFPKCEKTEKRRVT
DRLPTAPPTDPHDQPLPLPELSDDDELPPAAPPKPPSSKGKGKARDDAPEQHNAPSPTPPERASGEPDAPQGGAEQPEAP
APPGPRRSTRERRVTRREGNIYGESRPPVDQYRDIERRSNWEKTVGIRSGRDRAEPHRRDEQVPGPSSDQPSSSERRQPE
PTDNGESKLAKLCREGGVRCIEMLLNCAIPPFDAHPADSNVREWTYRDIQRLPPAEQKEWRAACEDELTMLRKRRVFELV
DRPSDRKVIKNRWVFDVKTDGRKKARLVAKGFSQIEGVDFDQVFSPVVRFESVRLILALAALEGWYITALDVRSAYLYGK
LDEEIYMEQPEGFVEPGSRGKVYRLLRALYGLKQAGLAWWRTLDKSMSKLGFTRLRSDAGIFVMKRDGETIVAVVYVDDS
FFCGRNKPFVDKVKAEFMKIWECRDLGPLSEFLRMRITRDGSTIKIDQCAYLEKVLERFDMQNAKPAQTPLPDGFHPLPN
PDAVNIDLRHRYQQVIGSLMYLMIGTRPDIAFAVTQMARHAANPSQEHLDKALYICRYLAGTRTYSIVYDGADRMGFSAY
TDSDWASDPITRRSQTGYFTKLAKGIFSWQSSLQKTTALSSTEAEYMALSDCSRQITWIVSLMRELGYNLGPIEIAGDNE
GSLHLAGNPVTEKRSKHIDIRYHFIRDRIDDNTVRVVHIDGQDNPADMLTKNLGHVKFLKFRPFLGMVFPTAAKRA
>Copia-3_CCO#LTR/Copia 278-5292 via tfasty with Copia-2_PSH, 64.8% SW:2871, 7 frameshifts and 1 stopcodon. [Coprinopsis cinerea]
MSSALTQLVPILDGTNYREWKPLAIAYLQFAGVWDVVDGTNPEPSDLPPDAKEEDKEARRKESKGVAREEYDSLKVPLTL
RMTPAIRLTIQSNQLARTIWTKLEESYGTPGASVVFADFRKAIAFKLSENENPVPQMDDLRSVFDRLHANGVRMPDFFQA
MILINAIPQKWDSIAVLLMQNKKVKELKLADVREAIMAEYERRTQGSVHANKMSAIKRKKGNPNFKQQKQQQSSSNSPAQ
GQQGQPSNDKKKSKRGKSSGKKKQHHHHHHTHMVDADSDSDSDDSSQIASAVVLGSHIISAHHHTPTPTTTSVASFTSSG
IKVNKVPVNLPAQVYTPATAEKTNDPRTHPVYPDLAQAQEICDRLHVPRTAKNLRPLMDFPVKKSLEDRLESPPPAKRAR
SESPLFTDSDDDDAVSLGMDTDDEPDFKADTEIEDTAMELDTGHIDEQRCVSSRRLNEQLADLTQRSILIDAAVLRDDLY
MDLCIALNYLARQYMSISSFFASCSECHSPFHGYDVWMMDSGCSMHVTSDETDFASYTPLRNSPEIRTADKKATLRWAGV
GSVFIKHMVKDSHGKYQEVRTRLYPVYHVPNLHGRLLSMGEFLQQRGHYVHGDNKSIGIYKPDQSQAIVCRPAIPGHTIF
WVKTRITSRKESTAKQLSMVYSVDYQTMHRRFGHPSKEVLEKAKGHTKGFPQNVSYPKRCTPCKGCHEGKMPSKSFPTST
SRAKKPFEKIHSDLKSFPVESYHRYKYFIAFFDDYTSHGWIVLLRKKDDAIKALRDFVAMVKTQFNASIKEWMSDGGGEF
KSEEFDNALKELGIKILQSVPRQPQQNGRAERFIRTIMDKAQALRFDACLPESWWEFSVSHAVHLYNRTPVRRLKWKTPY
ELFTQEGPDISHLRVFGCGAYVYLPEEVRKNKLSPKSELMVFLGYPEGMKGYLFMRLHNNSLFRGATAVFDETYFPKCPG
AQPQRGGVRAGDEPPPPSDRGDDNISPEGGDDDDFVHRPNSQNDTLPQRDQGGDRDDDQPQDPPPPALGDQPEEPPAPEP
QPDQPRRSGRERRTVTRPGSIYGDKTPSQIDAQSQRDWRKTVGDTERRPAGYPQVxKCKMRFPRPNPADNPNRDSGTADE
RGDLEKRLARLVREGGVEFITYLLSKAVSPDKPLQKSPREYTFRDIQKLPPKQREKWLAACKLEIEALQKRGVYILVTLP
AGRKAIKCRWVFDVKPDGRLRARLVAKGFSQVEGVDFNEIFSPVVRYESVRTMLAVAALEGWYVTAVDVKNAFLYGKLEE
EIYMEQPEGFKVPGQEHKVFRLLRAIYGLKQASNSWYKELVESAKLLGFRRLSTDTGIFIFQEKDGNFVIMIAYVDDILF
MGPSKRLVNLKKDEFKQKWECRDLGEPTEFLRMRIKRQGKTIRLDQKDYLKTVLERFGMRDCRVARTPMVEGYKPLPNTG
PVDHQLRQRFQSVIGSLLYLMLGTRPDIAYAVTKLSQFAANPSKEHLDKALYICRYLRGTMDYALVLDGSSSQGLIAYSD
SDFAADPIKRRSVTGFIVKLANAVICWTSHAQKTIATSSTEAEYMALSDCSRQVMWLKHMFNELGMPIDKVPICTDNNGA
IFIGSNPIQERRIKHIDVRYHYIRERVEDGDVEILRVDTNDNPADMFTKPLGHVKFEHFREQLGLEFGRA
>Copia-3_DPu#LTR/Copia 502-4953 via tfasty with Copia15-NVi, 1 frameshift and 4 stopcodons, plus a bad region from 2790-3400 removed (probably an insertion) [Daphnia pulex]
MQVFAALQHDQAQADPLVDGQPAQPVIEAQALDEPTLNQAAIDEWEQREINARAMILFNVDDDQQVSIRACRTAMEMWDQ
LNMEYSLMAPDHAIMSLGNFFQYKYNPSHTISGHIATLKRMYDELLGTPGQVSEEQLKMVILKTLPPSFDRLRSAWDSVP
IQERTVTALTSRLMIEERRTLEKHNGQRDPDDVAYFAVDTTYPEQGLAAQSHRRGGRGGNRGYRGKRGDYQGRGRRYDNQ
NSDEKTCFYCDKPNHVILNCRTRLRHEAEERQRNARNDVISKNRDINTKKIGFYSSSTCFSARSTDDFFADSGASHHMSD
QRSYFSSMTPIQKGQWLVKGIGGISLPVLGQGTIDFTATVDGKQFPGEFKIVLFVPSLNANLISVGTATNAGVEIIFTGN
TVLFKHEGTVIMTGQRSGKELYHLNITVNDRTTAAVAKQKIPFSIVHQRFAHLNCRAIQRMAEKNVVDGLDLQDSKTPSD
PCNGCIYGKMHHRCPFPKDEHRATRPDQIIHSDVGGPFRIPSICGGRYYVIFKDDFSGYSEGFIMKNKSEVKELFVKFCA
ATKRQTGRLVGTLHTDMGKEYEKQWFTDYLAKEGILHETTASYTPQQNGVAERANRTLMEAERSIMFNNPESSLNKQKKS
LLELWGPFLLASIYVRNRSMTNTEDATPYQKYFDKIPKVDHLxVIGCRSMVHVPTALRHKLQPKAEECWFIGYCKTTKAW
IFWNDKTRKTIVSRDAEFFEKEIYCGNTDEQQSSTLEFAEPIExxALLAEPDEPQSYKQLMMSENAEHWKEAMKEEYNYL
MKNQTWILAKLPPGRIALNHKWIGKYKPAYPGVEERWKARLTVVGTRQQYKIDFNETFAPVPKQSAIKIFLSYAAAMDLE
LTQFDIKTAFLYAKLKETIYMKQPEGFVVEGKEDHVCQLLKSLYGLKQAPYExNEEFNEFILAFGLVRSEADPxTSREKI
RNPHTHQLTHHxTNHQPHSPTRFVGLNIVRDRPNRLMYIDQENTIDKMLKDYNMWDCKPSSLPADPNARLSACSKPKSEE
EKEGKDELEEHTEEEEKEMEKIPYREAVGSLIYLATTSRPDISFAVGQVSRYCAKYTRTHWNAVKRIFAYLKGTKNLKLC
YGGTELPPAVVYCDADYAGDLDDRRSTSGYIFFYNGGPVCWASRKQSITAQSTGESEYLSANETTKESAWFCQVVLDITG
INIMPLMIKCDNDAAIAAAQRPHGQGRMKHIPIKMNLVREHIRTGKIKMEYVASEDQLADIFTKPLKSPAFQEMRKRIGL
S
>Copia-3_CP#LTR/Copia 50-4318  [Carica papaya]
MSTSSHSTLSHSSPLQFSTVPSPSINQVISVKLTQENYLLWSAQILPYLRSQGLVGFVDGSTPAPSQTITIEPSEATNGR
SIVINPEYTVWYHQDQLVLSLINSSVTEEVLGTMIGIITAREAWTTLEKQFASTSRARAMQIRMELTTIQKKDMKIADYF
RKIKRLGDTLAAIGKRVEDEELIAYMLQGLGPDYDSLVTSITTRTDVYTISDVYAHMLTYEMRHLRNGTIDQLSSANNVN
RMTTRGGINGARNGRGRGRQSYGGRRQTGRIGINPGRQQPRTQSSSDKNNLCQICGKPNHNALQCWYRFDQAYQAEDNIK
QAALATSGYTSDANWYIDTGATDHITSELDRLTTRERYTGTDQIQVANGSGLSISHIGNSLIPGSSRSLVLKHILYAPKI
NKHLISVKRLASDNDAFVEFHPNCFLVKDRVTKELLLTGKCKNGLYILPNSSNQALLTAKLSKEQWHRRLGHPASPVTVR
ILQDNNLAVDTSVSSSLICHACQLGKAHQLPFASSQHVSTAPLQLIHTDVWGPAISSVNNSKYYVSFVDDFSRYVWIYFL
KYKSDVESVFLQFQKHVETMLNSKIRSVQSDWGGEYHRLHNYFKSTGIEHRISCPHTHQQNGIAERKHRHIVDTGLTLLA
QSNMPLSYWDEAFNTACFLINRMPTRTIQQDTPLHKLFNKNPDYLTLRVFGCACWPNLRPYNNKKLSFRTTKCVFLGYSS
SHKGYKCLDRSTGRIHISRDVIFDENLFPFNESKSPAKIKHSHQPALLPVLINPTVYTEHALTNVEPVISDSHMSYGQSD
DIANDASVLSLLPADNTTHHEVIAEHEAENSSTNNQNRAQEQLPEHDISRDTIPEASNQHSMKTRSKNNIVRAKQFTDGT
VRYSDTSRSFAGTAAVNNLKHTIMTDAVAEPNNLEEAMRNPGWREAMNNEFSALQKNETWVLVPPKPGINLIDSRWVYKV
KRKADGSVERLKARLVAKGFKQRFGIDYSDTFSPVIKPSTIRVILSLAVTKGWNMRQVDIQNAFLHGILEEEVYMRQPPG
FQDPDKPQNYICKLKKALYGLKQAPKAWHSRLTGKLMELGFKASVADSSLFILKNRDITIYMLIYVDDIIIVSSSDQATE
SLIQNLKTDFAVKDLGDLKYFLGIEVKKTRDGLILSQRRYALNLLKKANMEKCKPMSTPMSSAERLLREQGIPLSTDEQF
KYRSTVGALQYLTMTRPDLAFAVNKVCQYLHAPTDTHWGAVKRILRYVKGTLDFGVKIQKSQTMMLSGFSDADWAGCPDD
RRSTSGFAVFLGVNLISWSSRKQATVSRSSTEAEYKAIANLTAEMIWIKSLLKELGVYQSKAPRLWCDNLGATYLTSNPM
FHARTKHIEVDFHFVREQVARKAMEVRFISSSDQVADILTKPLSRYPFITHCNNLNISRTCCD
>Copia2-PTR#LTR/Copia 141-4520 via tfasty with ATCopia62_100-4614, 3 frameshifts and 4 stopcodons. [Populus trichocarpa]
MYDHLEGNASTAHNDPFNTTTVNLSDDSSNCYYLHPFDNPGALLVSEIFTCENYIAWSRSMTIALTVKNKIAFIDGSLPQ
PITNNQTLRVAWLRSNNLVLSWLMNSIAKDIRSSLLYFTTAFEIWEELRVRYLRSDGPRVFSLEKSLSSISQNSKTVTDY
FSEFKALWDEYISYRPIPNYKYGNLDSCSCNILKLLTDRQQSDYVMKFLVGLHDSFSAVRSQLLLQTPLPSMGKVFSLLL
QEESQRTLTNMVGIPIDSQAMVAEQHHNPIPSQVQHMLHVLLNNKGKSEATCSHYGYPGHLVDKCFQIIGYPPGWKGPKG
KRFAATPHANRNYQRLPTAHNTVVSDQHQDTPNIVFSQEQIQNLLTLANSISNSKLNNTAKEVSVSGISFSCHTNSSPQN
RFTWILDTGATDHMICSPILFESIVLPQTQNQVHLPNGQKVPIACFRDVKFSPDITLHNALYVPSFNINLISVSKLTADN
TIGLFFLHTKCILQDLSKxRTIGLAETESGLYHLHKPPDQSTDQLDHxxNLVVVATDLWHLRxGHIPTSKINLLNKINPS
VTSTGKSICDICPLAKQKRLPFPFYMHTSIQAFQLIHIDIWGSFSVTSYSGHQLFLTIVDDYSRFSWLFLMKSKSETRGL
LSNFLIYVHTQFNTSIKTIRTDNGQEFNMPTFYQDHGIIHQTTCVETPEQNGRVERKHQHLLNVARSLMFQTKLPLTYWT
DCILTSTHIINRTSSLILQNQTPYQILFNKPPTYNYFRVFGCLCFANTLTHNRGKFQPRATKCIFLGYPPHIKGYKVLDL
TTCKTFVSRNVIFHESIFPSIPNTVHTPLVFPDFPQVFDSFPCKSSQPTPSYSIPPATLPLQTSAPPTSTLIQNDISQLR
RSARTTHQPHYLQQYYCGTMAQIPSADPISPNCSIPGKPHSLFYFLSTSQLSLQHRAFTSSISLVFEPTTYKQASSIPHW
QKAMTNEIIALEQNQTWDLVLLPHNKSAIGCKLVYKVKFQADGKVERYKARQVAKGYTQQEGIDFFDTYSPVAKMTTVRV
FLTIAAVNNWHLHQLDVDNAFLHGDLHEKVYMQLPPGYSTPHDPRVCKLKKSIYGLKQASRQWFSKLSTSLLLFGFLQAK
SDSSLFIRKTTNSFITVLIYVDDVIITSNTFTKINQVKQFLRTTFPIKDLGKLKYFIGIEVARSAKGIVLCQRKYALDIL
ADSGFSGARPVSFPMGTTLKLSANDASPPLIDPASYRRLIGRLLYLTITRPDLSYAIQTLSQFMANPHTMHLQAAERVLR
YLKATSGQGLFLKADSTFHLKAYSDSDWGGCIDTRRSVTGYLVFLGDSLISWKSKKQPTVSRSSAEAEYQALATTSCEVQ
WLVYLLKDFHINHSKPALLYTDNKPASEIASNLVHHERTKHIQLDCHLIREKLQDGLLTIIHIPSRFQLADALTKPLGCL
TLHPILSKIGMVNIHSHLEGG
>Copia1_OS#LTR/Copia 58-5758 via tfasty with ATCopia43_54-5123, 1 frameshift and 2 stopcodons. (gag and pol may have been joined while being separate ORFs) [Oryza sativa]
MATPARFSTKPHVFDGTDFSHWCSRMQSYIMAEDYDIWRKVSHPYVIPEAINTAAEKTAFEQNCKARNILLSGISRSDYD
RVAHLQTAHEIWNALSNFHQGTNNIKELRRDLFKKEYIKFEMKPGEALDDYLSRFNKILSDLRSVDSSYDANYPQSEISR
HFLNGLDMSIWEMKVTSIQESVNMSTLTLDSLYTKLKTHEMNVLSRKVDSKSSALVSSSSSLDVDASSSKPSFLAVFNAT
SDDQLEQIEEEDLALVANRIARAMNNARNRKRGGPNRCFECGSIDHLRSHCPKLGRGKREDKDGEKTNNNKPNKQVEGFI
PREEDGESxEGFSTSLRRLRAISDVDGESGDDDKGKNISDVCFMARGESDTEYEDNEVSAFEEAINILSAKNKKCEKMYR
KQEFIIESLKSEIARLKSLIPNDDDCENCEVLMNEISKIRDVNAAHDLKNRSSLACSFALHTRTLDELFLTKKLLQKYQI
AFHASLMFNMISAKKLKQPHDVLDCSTCNLNKMKLKDALGRVEYMEDVVKNNEVLSCPKCRKSKGVMVDCENCANLEKEV
SYLKNSLLRFSDGKKNLNMILDQSKVSTHNRGLGFNPYAHNSRHPPVVLGVGARSGEILVKPDTNKTVFKSAGIMSTMNA
SSSKSNVVHAKPPVVACVAKSSNSTNVSNHREKYTCSFCGKDGHIVGFCFRLAHKQKKEREIAFAKSKWQKSGFPSRKPV
RPQWVPRSDRRPVRPATEPRSDRAPVRPAVQRRSDRPPVRPATVPRSDRPRRNFSENSKIDFARGYMPIGSSGRVSQYWI
PKFLLSSNPSTEASTSACVxALVARKENVWIVDSGCSRHMTGDKNWFSSLKKASKTESIIFGDASTSAVLATGLVKVNEK
FELKNVALVEDLKYNLLSVSQIVDENFEVHFKKTGSKVFDSCGDSVLNISRYGRVFKADFENPVSPVITCLVAKFDKDVM
FWHRRLGHVGFDHLTRLSGLDLVRGLPKLKKDLDLVCTPCRHAKMVSTSHAPIVSVMTDAPGQLLHMDTVGPARVQSVGG
KWYVLVIVDDFSRYSWVFFMATKDEAFQHFRGLFLRLELEFPGSLKRIRSDNGGEFKNASFEQFCNERGLEHEFSSPRVP
QQNGVVERKNRVLVEMARTMLDEYKTPRKFWAEAINTACYISNRVFLRSKLGKTSYELRFGHQPKVSHLRVFGCKCFVLK
SGNLDKFEARSTDGLFLGYPAHTRGYRVLILETNKIVETCEVSFDEASPGTRPDIAGTLSQVQGEDGRIFEDESDDDDDD
EVGSAGQTGRQAGQTAGTPPVRPAQEVRSDRPGSSGSGTVDADRDGPPEITTSTSTDTERGSTSEVAAPLHIQRRHPPEQ
IIGNIGERTTRSKVTTHDVCANSAFVASFEPKDVSHALTDESWINAMHEELENFERNKVWTLVEPPSGHNIIGTKWVFKN
KQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPG
FENPDFPNHVFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHALVVD
FAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYR
SMIGSLLYLTASRPDIQFAVCLCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKS
TSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGLTFEKVPLFCDNTSAINIAKNPVQHSR
TKHIDIRFHFLRDHVEKGDVELQFLDTKLQIADIFTKPLDSNRFAFLRGELGIIHPFGMV
>Copia2_AG#LTR/Copia 189-4232 [Anopheles genus]
MDFSKVGVIRRNNRNYRSWAFKVQMLMMREGTWTYVDPGVAPTPVTPEWTEGDSKARATIALLVEDNQHNLIMTKNTAKE
TWDALKAHHHKATLTGKVSLLKEICNANYREGENMEDFLYGMEDHYSRLENSGEKLSANMQVAMILRSLPKAFDALTTAL
ESRSDKELTMDLERAKLIDESEKLYGGKVQEERVLKAKSEAKPGACFFCGQPGHKKRECKEFLNRKSSGEGEKKKKIKPN
KEQQVKTVRENDASSFTFMVRQPEIRGNDRSWLIDSGASSHMCSDKSAFTVMEQSLRSNVTVADGSENRVEGVGDCLIKC
AVEYGEIIEITLRGVLYVPTLEGNMISIGKLAEKGVRAVFDNTGCKLVYGNTVVAVADKVSDMYWLRIAQDRVMKSVVKE
HTKNCQHTWHRRLGHRDPAVIGEMKRRDLVSGLEVVDCGIRWTCECCIECKMARSPFPPVAEKTSTEVLDIIHSDVCGPM
EETTLGGCRYYMTLIDDHSRYTFVYFLKKKSEAEDKFREHVKLVQNQFGRKPRIIRSDQGGEYSNKALRKFCADEGIKME
FTAAYSPQQNGVAERKNRSLTEMGRCMLRDAGMHKRFWAEAINTTCYLQNRLPSAAVERTPFEIWFGRKPDLTNLRLFGC
VGYVLIPSVKRKKLDVKAERMTFVGYSGEHKAYRMLNTQTGEIQISRDVRFLEIDDGSKEQTYGDPKIEDNPTESVEIEW
SLDETKREAKTNVANDTISESEFYGWDCSDDGWPRGFWNDNDNNWLRGLWDDDDAEAGAAMPEAVLDAVPEAMPAAVPEV
SNTPVRRLQRVTAGVPPARYDEEVYLVKESVAEPKTYKEAVSGPQSAEWKIAMAEEMQSHQENGTWELAELPPHRKAIGS
KWIFKCKADEDGHFVRYKARLVAQGFCQKFGTDYDLVFVPVVKQITFRTMLVLASKRKMLTKHVDIKTAYLHGLLKKEIF
MRQPQGFESDNPNEVCRLHRSIYGLKQAARVWNTKIDDVLKTMGFIQSTADPCLYIREKAGKSIFVLIYVDDVIVICNTE
EEFSEVVHVLTLNFTISVMGNLRFFLGIRIRRNDGRYCMDQRAYLERVLERFGMLDAKPSKFPMDPGFLKRKEENGRKLD
SPKAYQSLIGALLYAAEISRPDIAIATAILGRRVQDPSEADWNEAKRILRYLKGTLDSVLYLGSGGQKLECFVDADWAGD
ESDRKSNSGFVFKFGGGLIGWGCHKQKCVALSSTEAEYVSLAECLQEVKWILKLMADVGEQLDGPVLVNEDNQSCIALTK
GDRAERKAKHIDTKFNFVEDMVRDGIVKLQYCPTEHMQADLLTKPLQAVKLRQLREAIGIKPFSVEE
>Copia3_HV_gagpol#LTR/Copia 55-5962 via tfasty with PREM2_ZM, 4 frameshifts and 7 stopcodons. [Hordeum vulgare]
MDGTAITIAPVESDGTSTEVRSFTSEDLERALAKQKEEHDDSLEALVQIRLASLTTGTTTSPRASGQNLHGSSFGQQPPR
NNQTSVPWLYARSQVEKPKYNPGGEPPLLDDNSDFALWRVGMQDHHRYANDEMLDILEHGYNPVDPRCLTPRETYDKHLN
DTAIMCIRKGMNENQRRPYIHITSAKELWDSIIRTKTGTSTLRLSQYEIAKGQLQNFCMEKGESPKQLLERLMTLAAYIE
SCDCDKTQDGFNLTKRFLVDKLLHALAPYHHQMVWDIRQHHGFKQMTPDDIISTFQLFEESQSTLPCMALQHQRSILLxK
PSMNVTKKKVKKKRVMKTAKMVMMLTLMKASYEDIALFVKKFSAGKFKGRFPKKKVRKCYNCEETNHFSNDCPYEKREDK
PRFPKTFLKKKLPNPMNSKLKRRDGRAMVAQEESDPEDVRGVAGVSQDTQNTLRLVNKSGDVVHYNYMKDYKGNAHKCLM
AKTAIEDEEDQSSHDKVKVTPRLNSFSLASTSSDEYLDAEDHYEDNDLDHPMFAKINKFMCSPKGKKLTMFRILMEMVSK
HTNTIKELETLVTEEKERNEILExKILYEEAQNDALCSKVGENLDKHANDLASLKKAESVCKELLNDKNRLVNSHASLSK
DCERLSLSLKDKEEKLTVLTKSFEALKGTYLDTLAKAYSSPIINVDTCTANSSSELASILEENCSLKAxLDRGLMTCAQG
QKTLNEILSQHNEVFTKEGLGFNPSTTKKSVSPLKCTTPLKEIFVREGHKEKGKVVSGSATRGLPTLNKTTEFMPPSYVL
RKSKEGEVYAKFVGPRNAFRFYAIWVPKTLVTNVRGPMKKWAPQTKSxFVYRLYFSGGVKWVIDSGCTNHMTGDSNLLYD
FMQAIRPYMSIVFGGGSKGQVIGLGKVEITNDMSLANVMLVQSLQYHLLSVCQLASVGYDTLFRLTDVKVFKRDTLEVAF
VGELDGNLYTVDFSKESTFHTTCLMAKADMGWLWHRRLAHVGMRNLHNLLNVNHILGLTNVSFKKDSVCSACIDGKQHQS
KHPPKNIVSTSRPLELLHVDLFGPPSWASLGGNKYGLVIVDDYSRYTWVFFLKSKDETKITFIDFAKQVxRKFDKDIKAI
RSDNGSEFKNYTLEEFLTDEGIEHQYSVPYTPQQNGVAERKNRTLVEMARSMLDEYKSPHSFWAEAVNTACHASNRLFLR
PILEKTPYEVLTGNKPNVKYFRVFGCKCFILNKRERLGRFQSKTSEGIFVGYGSNSHAYRVYNKSTGCVIETCDVTFDEF
NRSHGEQVDLTDAGExDSSQDILNMGVGTLLPMEQKPHDDDESISHPQDSSLSVPPQDTSTHIMPVVEDQVGEHVSHPDH
TQEQVDLQELDQSMDMVDDEPQQVQREEEYLPWHVNDPYVEDVDDGNEVEPHETLTSIMLRVAGRVDIDQILTGVLEGRV
TRKQLTNFCAHFSFVSSTVPHRVQDALCDNDWLLAMQEELNSFTRNEVWSLVERPIEEHNVIGTKWIFKNKEDENGIVLR
NKARLVAQGYSQVECLDFGETFAPVARLESIRILLAYAAFNGFTLHQMDVKSAFLNGPLQExVYVSQPPGFVDPHHKDHV
YKLHKVLYGLKQAPRAWYDHLKKFLLDDGFVRGVIDPTLFTKRENGDLILCQIYVDDIIFGSPNIHLCKKFAASMTKTFE
MSLNTDLKFFLGFQIQQFQEGIFLSQTKYLKGILENFDMTNAKPMKTPMATDVVLNEDTNGIPFDPSTYRSMIGSLLYLC
ASRPNIMLSVGICARFQASPRESHHTAVKHILRYLVHTPKLGLWYPKDAKFDLIGYSDADWAGDKVGRKSTFGACQFLGR
SLVSWSSKKQNYVSLSTAEAEYIAAASCATQLLWMRQTLKDYGITYRHVPLLCDNESAIKISENPIDHPRTKHIDIRYHF
LRDHVQKGDIDIAHVGTDMQLTDIFTKPLCVPRFCQLRRELGTLELDNITd
>Copia2_Dpse#LTR/Copia 547-4185 [Drosophila pseudoobscura]
MSGNMNFNIEKLDENNYSTWEVLMRSVLIQNDLWPIVSGKIELSESATSEQRAAFELKDQKALASILLCVKSTQLNNIKN
CVSSSQAWQKLNKIHRPSGPARQVLLIKQLLTLKMSDGISAQEYLRKFQVVHEALAEVNIKVDEKILSVVLLNGLPKSYE
SFVVAIETRDDLPSLSMLKIKISEEANRQEDSISKEITSSAELHVSYDNNNFKKNFKKGKKCFKCGKEGHFKSECRAKSK
QEGANNKGANSKSGERLGTMLCVTEYDKVEPEKYVPILSLAKPNDQMLNAWCIDSGATAHLCCDKERFVSFTEDNQKVFL
AGGKSLIAEGHGTVQVKFGDRSVTMENVILVPDLQYNFISVTKLLKHGKKVVFEKNQAMIFENGKIVIKAHLENGLFMVQ
DNQEKCMNIVNVEADAFKWHNRFGHVHFDALKEMVNKEMVIGLKGIYKPKQVCATCAKSKICVQPFQSSTNRSKGVLDLI
HTDVCGPMQKQSMGGNRYFATFIDDCSRYVSVSFLKTKDQVFEAFKEFKSQVECQTGRKVKVLRSDNGREYISNVFDNYL
NQNGIKRNLTVPYTPQQNGVAERANRTLVEMARSMLLHAGLSECYWAEAIRAATYLRNRVASSCLSGVTPFEIWTGRKPV
VSHLRVFGSVAIALDKTKKSKFAQKGLEYIIVDYSDTAKAYRLVSKETRKLVESRDVIFVEPEGGKLDASCSNDIASIEV
QQNQNAEPEMDSEQFKDPENEPENQEEIRSSNDILVIPEPIRGPGRPTIVRTGKPGRPRKQYHMLNAILAADVQVPQNYA
QAERSTEGEIWKASMKDEYESLVKNGTWSLTKLPSGKKSIGCRWVYAVKSNPDGSVNRLKSRLVAKGCSQRYGIDYKETF
APVVRHATIRLIIALAVEHGLHLHQMDVVTAYLNGELEDEVFMREPEGFISEVHPNHVLRLHKSIYGLKQSGRVWNSTLD
ATLRRIGFIPTVNEPCLYRKPGKNMCLIAVYVDDIILACKDLDDISDIKIKIAAEFDVVDIGPMQYFLGIEVKREGSTGA
ISISQRKYIRELLEQYNLKDCRQTSTSLEAGYQVTCNKEDCRRVDITSFQKLIGELSYLAVMTRPDIAHSVNKLAQRNKD
PHSEHEAAAKHILRYLAKTIDWEICYTKQGKAIECFVDADWASDMTNRKSFTGYVCMLAGGAVSWESRKQSTVALSSTEA
EYIALSSAAKEAI
>Copia1_DR#LTR/Copia 103-3996 [Danio rerio]
MRLLGLKETVLSEASAHADDDEGPDKNEEAYAELIQYLDDKSLSLVMRDAADDGRKALRILRAYYAGKGKPRIISLYTEL
TSLQKKPSESVTDYIIRAETAITALRNAEETLSDGLLIAMILKGLPDSFKPFAIHITQSDTEITFAEFKTKLRNFESTEN
FHSVASEDNVMKANASPSGRKGREGLAYSDITCYNCQQKGHKMRTCPALNCKRQWCNYCKSSTHKDENCRRKRRDDIKLA
SDKNDDEEHTFIFKASDYRSYEIQRKGLMVDTGATSHIITDLKKFKQFDDKFQPEKHYIELADGTKASGVAQRRGDAEVH
LIDSAGHKVKTILKNALYIPSYPQNIFSVKAATTNGASISFQQGQDKLTHKDGTKFSIHEYNRLYYLNTANGDGDTDSCN
SCYDIQTWHEILGHCNYEDISKLQNVVKGMKITGKIDKSNLNCEICTQGKFVQSRNREPDTRAKAALELVHTDLAGPIDP
EAKDGFKYALAFTDDYSGAVFVYFLKAKSDTARATEKFIADTAPYGRIKCVRSDNGTEFTAKEFQSLLSKNGIRHETSAP
YSPHQNGTAERNWRTLFKMARCMILESGLPKMLWTYAVMTAAVIRNRCYNSRIHQTPYYALTGKEPDLSKMRIFGSVCYA
YKHDKKKLDARCEKGIFVGYDKYSPAYLIYYPDTGKVLKHRLVKFITRCVADHQTQTEITMSDDDSHRERYVSPQSTHNI
TNEMPEKTTETESQSSAQTESGEQCARYPKRNRRAPQYLTDYVSDVESDDQILTNVDYCYRMCDLPQTFEEAMNSNESKM
WVKAMEDEISSLQENNTFTLTTLPEGKHAVGGRWVYSIKSNIDETETYKARYVAKGYSQVMGVDYIETFSPTANITSIRA
LMQMAAQYDLELHQMDVKTAYLHAPIDCEIYMEQPKGFEVKSNRGDKLVCKLNKSLYGLKQSGRNWNKMLHVYLTENDFI
QNLADYCVYSKRSGKDRVIIIIWVDDLIIAASDNSLLKDVKEMLTSKFKMKDLGKLKHFLGIDFDQSKGTVRVNQKRYIL
RILERFNMLDCKPRSTPCELKLDYDSDSDPIDPKRYREAVGSLIYLMTCTRPDLSWVLSKLSQYLSKPNEQLWSTVKHVM
RYLRGTIDQELCYKKSDEKLKLVAYCDADFASDLNDRRSTTGYCFSLSANGPLISWKSKKQSTVALSTCEAEYMALTVTT
QESMYLVQLLDSMENDCMYMPVQIFEDNQGAIALSKNPVCRQRCKHVDVRYHFIRSALSDGKVTVENCPTEDMVADVMTK
PVTKFKLEKFKGFLFGM
>COP18_MT#LTR/Copia 35-4054 via tfasty with Copia3_OS, 4 stopcodons. [Medicago truncatula]
MSHKFDIEKFDGKISFSIWRVQMRAVLTQNGLKKALHGKTKKSTSMTDEQWDELDEKALSSIQLCLSKEVLREVVNEMTA
AGLWLKLETLYMTKNLANKLHLKERIYTIRMVEGTPIQSHLDEFNSIILDLENIDVKIDDEDKVVLLVVSLPSTYKHFKE
IMLYGNNDTLSFEDVKSNLLFKEKFDLEVHSVDKGEGLSVRGRTQEKGSTSHKKSRSKSRGRKSNKTCRYCKKSGHEISD
CFILKKKQEKQEKGKSPQSPEAANIEADSGDDITLFVVSSNKRSKTEWILDTGCTFHMCPYKDLFTTFERVDYGVVLMGN
DAQCKVAGIGTVQFKTNDGVVRTLTNVRYIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGSLVLLKANRIGSLYVLQG
TVVTGSAVVSSSIPENDVTKLWHMRLGHMSEKGMHLLSKQGRLGKQCIDKLEFCKHCVFGKQKKVSFSTATHRTKGILDY
IHSDLWGPSKVTSYGGRRYMMTIIDDFSRKVxVYFLRHKNETFPTFKKWKILVETQTGKNVKKLRTDNGLEFCSGDFNEF
CSNHGIARHKTIMRNPQQNGVAxRMNRTLLERAxCMLSNVGLWHRRDLxAEAASTACYLVNRSPHSALDFKVPEEIWSGN
PVDYSNLRIFGCPAYAHVNDGKLAPRAVECIFLGYASESKGYRLWCSDPKSQKLILSRDVTFNEDSLLSSGKQSFVSSST
STGNLQSTSEKVEFVLKPASPNVDVPSTSTNESNIDDHSIDDDDDDSTTSPIQQQGDDYSISRDRVRRQIRKPARYTDND
NLVAYALSIAQEVNDGVEPISYTEAVSCVESSQWLVAMNEEIESLQKNGTWALTELPNGKRPLRCKWIYKKKDDIPGVED
PRCKARLVVKGFNRKEGIDFNEIFSPVVRHTSIRVLLAFVALFDLELEQLDVKTAFLHGELEEEIYMEQPEGFISPGKEH
LVCRLKKSLYGLKQAPRQWYKRFDSFMIGQNYCRSQYDDCIYFQNFQNGSFIYLLLYVDDMLIASRDKSLIKKLKTQLSN
EFDMKELGATKKILGMEIRRDRQAGKLFLSQQKYIERVLDRFNMNNCKPVSTPLAAHFKLSSEFCPNTKEEMEHMSYVPY
ASAVGSLMYAMVCTRPDLAYAVSIVSRYMHNPGKSHWSAVKWIFRYLKGTSGIGLVFDRKMATTNDVAGYVDSDYGGDLD
GRRSLSGYIFTLCNSAISWKATLQSIAALSTTEAEYISATEGVKEAIWLRGLVNELGLTQGVLTVFCDSQSAIHLTKNNR
YHDKTKHIDVRRHFIRDIVVAGEIAVEKIHTSKNPEDMLTKPLPNTKFQHCLDLVGLYST
>COP7_MT#LTR/Copia 44-3973 (1 stopcodon)  [Medicago truncatula]
MGSKWDIEKFTGSNDFGLWKVKMQAVLTQQKCVEALKGEAAMPATLTQEEKREMVDKAKSAIVLCLGDKVLRDVAREATA
ASMWAKLESLYMTKSLAHRQLLKQQLYSFKMVESKSISEQLTEFNKILDDLANIEVNMEDEDKALLLLCSLPKSFEHFKD
TILYGKEGTTTLEEVQAALRTKELTKFKDMRVDEGSEGLNVTRGRNEHRGKGKGKSRSKSRSKGFDKSKYKCFLCHKQGH
FKKDCPDKGGDGSPSVQVAEASNEEGYESAGALVVTSWEPEKSxVLDSGCSYHMSPRKEYFETLILKEGGVVRLGNNKAC
KVQGMGNVRLKMFDGREFLLRDVRYVPELKRNLISISMFDNLGYCTRIEHGVCKISHGALITVKGSRMNGLYILDGSIVI
GNASVASVASHNNSELWHLRLGHVSERGLVELAKQGLLGKDKLDKLEFCEHCILGKQHRVKFGSGMHHSSRPFEYVHSDL
WGPSKTPTHGGGSYFLSIIDDYSRRVWVFVLKNKSDTFEKFKEWHTLIENQMGTKLKGLRTDNGLEFVSEQFNEFCRLKG
IKRHRTVPRTPQQNGLAERMNRTLLERVRCMILGAGLPKSFWGEAVTTAAYLINRCPSTGIDFKTPMEVWSGKPADYSSL
KVFGALAYAHIKQDKLEPRALKCVFIGYPEGVKGYKLWKLESSGRSRVLISRDVTFDETRMGMKCKDLETQVPETMVERT
QFEVELPNEEEEDVEDEASTSDTSGTQPVVDPEYLLARDRERRTITAPKRFGYADLVCFALNAAEDVQDSEPRNFKETFE
SKESKYWLKAVNEEMDSLERNQTWKLVKLPNHQRVVGCKWIFKKKDGIPGVEGPRYKARLVAKGFTQVEGIDYNEIFSPV
VKHCSIRILMAIVNQFNLELEQMDVKTAFLHGDLEETIYMEQPEGFVEDKSKVCLLKKSLYGLKQSTRQWYRRFDEFLLK
TGFVRSGYDSCVYMLKKNEKVILYLLLYVDDILMASSSKDEIMKLKERLNGEFEMKDLGPAKRVLGIDIKRNRDKGELFL
SQLGYLKKVVERFRMSNSKTVSTPLGHHTKLSIQQCPQSEDEKQLMEGTPYASGVGSIMYGMVCSRPDLAYAVSIVSRFM
ANPGIVHWQALKWVLRYLNGSLKGGLKYTRAAQDEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTAISWKANQQFVVAL
STTQAEYIALVEGVKEAIWLKGMIGELGITQECVKIHCDSQSAIHLANHQVYHERTKHIDIRLHFVRDMIESKEIVVEKV
ASEENPADVFTKSLPRSRFKHCLDLIKFVE
>COP20_MT#LTR/Copia 106-4157 via tfasty with ATCopia78_2-4077, 1 frameshift and 2 stopcodons. [Medicago truncatula]
MSNNNFNIVWSGPKLNSELDFNYWEFMMTTHLKAHNIxSYVESGLQQGADELARRRDQLALSQILQGIDYSIFGKIANVK
TSKEAWDILKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQYFTRVINLVNKMRVYGEDIQDSKVVEKILRTMPMKY
DHVVTMILESHDTDTLSVAELQGSIESHVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRGNFRGRG
RGSFRGRGRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNNRGRGRGCYNQERTNNGCFNCGKYGHKAADCRYKHQANMAEN
SYQHFGESSQNQHSLFLASNTLxEEENIWYLDTGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDG
SQNFIGDVFYAPGLHHNLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSPNRLFPLRIQHDQFPCLSSIIPNNDW
LWHMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESFPTGKSWRAKKLLEIVHSDLCSVEIPTPGGCR
YFITFIDDFSRKAWVYFLKQKSEAVDSFKTFKAFVEKQSGCLIKALRTDRGQEYLVGTDFFEQHGIQHQLTTRYTPQQNG
VAERKNRTIMDMVRCMLKAKQMAKEFWAEAVATAVYILNRCPTKSVQEKTPEEAWSGRRPSIRHLRVFGCIAYAHVPDQI
RKKLDDKGKRCIFIGYCSNSKAYKFYNLETKKVIISRDVTFDEGGMWNWSSKSQKEPIVTPNDYEEEDEHVDTTPDEPDE
PETSNREKRNRRLPARLQDCVLGTDNDPSDEEIINFALFADCEPVTFEEASRDENWIKAMDEEINAIEKNKTWELTELPP
DKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDTIRMLISLSAQNNWKIHQMDVKSAFLNG
TLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGLKQAPRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVD
DLIFTGNNSKMIAEFREAMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPVEEKLKLT
RESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAKRILRYIKGTLTEGIFYGNNSDVKLVGY
TDSDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVALSTAEAEYIAATSCATQTVWLRRILEVMHHEQNTPTKIYCDN
KSAIALSKNPVFHGRSKHIDIRFHKIRELIAEKEVVIEYCPTEEQIADIFTKPLKIESFYKLKKMLGMMKA
>Copia#LTR/Copia 156-4385 [Drosophila fruit fly genus]
MDKAKRNIKPFDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEYLSDSFLNFATSDITARQI
LENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIE
TLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGH
IKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAV
AKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNVPVI
NFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRP
LFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEM
RQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMW
HNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVF
LKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESN
KYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVV
LNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVA
RGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYG
LKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEI
KHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLT
TAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLIC
WNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFARE
QVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQDDQSNAE
>COPI1#LTR/Copia 35-4003 35-4003  [Oryza sativa]
MASMKYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLIQLHLSNDILQEVLQEK
TAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANF
RDTILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSNDRDKSQSRGRSKSRGKKFCKYCK
KKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYKSVQNGDV
VRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSAN
LYVLRGSTLHGSVTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHR
TKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNGGEFC
SDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIE
VWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRSVVFNESVMFNDSLPTDVI
PGGSDEEQQYVSVQVEHVDDQETEIVGNDVNDTVQHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQV
ENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKARLVAKGFS
QIAGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLK
QSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGSPIYLLLYVDDMLIAAKSKEEITTLKKQLSSEFDMKDLGAAKKIL
GMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCS
RPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRTDKGLVGYVDSDFAADLDKRRSLTGYVFTIGSCAV
SWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAIYLTKDQMFHERTKHIDIKYHYVRD
VVAQGKLKVCKISTHDNPADMMTKPVPVAKFELCSSLVGIVV
>Copia4_DR#LTR/Copia 78-4109 [Danio rerio]
MVSRAGGYLAPQFLFDGSEEKFDLWETRFLGHLHTLKLKETILHQPTDAEAEQIAEDRRKNADCYAELIRLIDDKSLSLV
RHDAADDGRKALKILKEHYSGKSKPRIINMYTALTQLHMSDNESVTDYLIRAENNITALREAGELMSDGLTIAMVLRGLP
DSFKPLAVHITQNEDDVTFTDFKRRLRVYEETEKMKVATTDNVMKTCTRQGQGFNKPHTRDRKDEDINIICYKCGIKGHR
ARKCYKRVWCNHCKNSTHAEFLCKKKTDRDGVRKFKDECDSDQDHLFKVKNLEYENMSPNINEKGIMVDAGATSHIVNDI
RKFKDFDSSFRPQTHSVELADGTRCNGIAQQRGTAVIHFLDESGHQHRAQLRDALYMPSYPHDIFSVARATNGGATVIFK
RGNSRMITKDGNKFNIHETGNLYYLPTVEENADQCKVCHDLQTWHEILGHCNYEDVRKLQDVVRGMNIKGDTAKKNWLCE
ICTKGKFTQTRSREPDRRAEKPLELIHTDLTGPMPTQSREGHKYAQSFIDDYSGTILVYFLKSKSDTVQATEKFLADIAP
YGDVKCIRSDNGTEFTCRDFQTLLMKNKIRHETSAPYSPHQNGTAERGWRTLSDMTRCLLIESKLPEELWNYAMQTSAYV
RNRCYCSRTKKTPYELFTGRKPDVSKLQKFGSTCFAYKQEKGKLDSRCEEGVFIGYDKNSPAYLVYYPNTRKIQKQRLVK
FKIRLMREKETQTSETSTEFEIISPKISSEGKDEGDLQDKPAQEIQSDTSETLSEQTEHTQPDKTTETAMRKNPTRVRRK
PAHLQDFETDNQEDKLQTCIDSCYRVICDVPQNYQEAITSTNSMHWRNAMDKEMKSLKENQTFTLTQLPQGKQPVGGRWV
YTLKRDTDGSEKYKARFVAKGYNQKPGTDYDETFSPTADMTSVRVVMQKSAQENLILHQMDVETAYLHAPIDHEVYVEQP
EGYEQESETGEKIVCKLEKSLYGLKQSGRNWNAVLHECLTENGFMQNPADNCVYTREKPNEKVILIVWVDDLIIAASSES
ILESVKGMLTERFKMKDMGRLKHFLGIDFEQTEGLVKMSQEKYVNKILERFEMQNCKSRETPCELKLDFSEDAEKMKDKR
KFREAVGSLIYLSTCTRPDLSFVVSKLSQNFAEPTEQHWNTVKHVFRYLKGTTKHELSFRKNDTEKLGLKVYSDADWASD
TQDRRSTSGYCVSLSEESSLISWKTRKQSTVALSTCEAEYMSLASAIQECIYLKQLLRNMDRYQYAPTKVYEDNQGTIAL
ARNPVCRQRCKHIDIKYHFIRETVNDGKVILEYCPTEEMIADIMTKPATKQKLKRFYRYIFDT
>Copia21-NVi#LTR/Copia 3-2702 C-terminal fragment via tfasty with Copia13-NVi, 1 stopcodon. [Nasonia vitripennis]
MENLPFKNNRSGSDRPLHTIHVDTMGKISPPSFPGENNFIIVFIDDFTRYARAYSVKHKNESGKCLENFLKHMRNLIGKN
EKVCYIRGDNGTEFTGGEFAKIMEREGISNNFVLPYTPELNGTAERFNKTIQMKIRALMIESGLPTTMWVLAVEAAVHTY
NRTPHKGIDFKTPLQMINPNRKSHIEELKRFGSLAYIKVSIPERKFSERAIKSILVGYIPTGYLLWQPQTQRLLNSRHVR
FNEKVVYKDISGLSKQAEIQIGDCKEHKTTNDSEKQTVHPSENTETANIDKPKRGRTMKIKATEVKQKTRENPKRKAKEQ
PLRDPNFVYCIHEENADELKKKSEDEICYVRLAELNEDPTSYREAVNSEQGEKWKEAIREELKAMNDNYVWEIVDKPENI
SEKRRMNIIDSRxIFKRKCNNGEEKFKARLVIRGFKNKNQYELSETYTPVSRLSVIRSALVIVNKHNLDVHQLDVKTAFL
NGILEDEVFMEIPEGLDLNREKKMCKLRKTLYGLKISPKRWNLRFSEEANKLGLERDINGPCIFTWRKEGKMVLLVLYVD
DILLAGNNSEKIHEVKTKLCEVFEMKDLGEPKLFLGMKIQRNKEKKIMILSNPEYTKKILERFNMNGSKPQSTPMVTRQV
KNRESEQHEKLRDQETPCKARYREAIGSLLYLAGTTRPDIAYAVIFLARKQTALSESDWKDVKRIFRYLKGTTELGLTNR
ESGEKLEAFTDASFRDCEESKSTGGYVIQLYRNTIAWRSYKQSYTSLSTCQAEYLAMSEACQELISLDKAIRDITGKTNY
PVTVWCDNASAGKCTEMDGVHKLKSFDDDVENIQRKLKERESTGTKSHIAETHGDFIKSCVMENKVMVKWIGTKENQADI
MTKPLPASAHIELRDKILRI
>Copia20-PTR#LTR/Copia 518-4617 via tfasty with LCCopia1, 1 frameshift and 1 stopcodon. [Populus trichocarpa]
MSSDKLDLFHIRLNGKNYSAWEFQFQLFVKGKELWGHINGSNPAPTDVDALSRWEIMDARVMTWILSSIEPHLVLNLRPY
KTAAAMWNYLNKVYNQDNTARRFQLEYEMANFTQGSLSIEEYFSGFQNLWANYSDIVYANVPTAALSAVQAVHDTSKRDQ
FLMKLRSDFETARSNLMNRHPVPSLDACLSELLCEEQRIITQAAMEHRANVSAPVSVAYTAQGEIRGRNMHVVQCFSCKG
FGHIARDCPKKFCNYCKKHGHIISACPIxPERKQGTAYHASIGASGSAALPIASPVVPIPTPTGLANPNTLTPEMVQQMI
ISALSALGFSGNHKLLFKPWYLDSGASNHMTNTTVPLSNVRNYDGNLKISTVDGSSLPISVVGDLSPSLTDVFVSPYLST
NLISVGQLVDNNCDVHFSHSGCVVQDQASGKMIAKGPKVGRLFPLHISHSTNISSFPLLSFACNFIGSENKRWHKRLGHP
NSDVLRTLINSGLLGHKTCSSLDLSFDCTSCKLGKSKVLPFPHHASRASKCFDIIHSDVWGIAPIVSHAHYKYFVTFIDD
FSRFTWVYFLRAKAEVFSVFKRFLALLETQFSASIKVLRSDSGGEYMSNEFQGFLQSKGIISQRSCPSTPQQNGVAERKN
RHLLDVVRTLLLESSVPPRFWCEALSTSVHLINRLPSPTLNNVSPFFKLFGHSPLYSDLRTFGCVCFVHLPAHERHKLIA
QSVKCVFLGYAIPQKGYVCYDPHACRIRVSRNVIFFENQYFFPSHVELPSAPLPLLPSFSDSTTMVERFRPGFVYERRRR
HESDSTSLVPLSDLDPVPDSAPISTTLRRSTRLSRPPDWYGFFTPVSLVTTLSTISIPSCYKQAMKHTCWQNAMQAELQA
LEENHTWDIVPCPSTVKPIGSKWVFSVKLRSNGSLECYKARLIALGNKQEYGVDYEETFSPVAKMTTVRTILAIAASQSW
QLHQMDVKNAFLHGDLHEEIYMKLPSGMITSSPHNVCKLRRSLYGLKQAPRAWFEKFRSTILSFSFIQSQYDPSLFFHIS
VSGIVLLLVYVDDIIITGTDCGLITKLQQQLHATFHMKDLGQLTYFLGLEVHHRPNGIFVNQHKYIQDLITLAGLEDTSS
VDTPMEVNVKYRKDEGDLLDDPTLYRSLVGSLIYLTTTRPDISYAVHQVSQFMSSPRHLHLAVVRRIIRYLRGSPNRGLF
FPTGSSLQLVAYSDADWAGCPDTRRSTTGWCMFLGNALISWKCKKQDRVSKSSTEAEYRAMSTACSEIVWLRGLLEELGF
PQVTSTPLHADNTSAIQIATNPVFHERTKHIEVDCHFIRNTLENQVISLPHISSDLQIADVFTKAMTRQRHQFLIGKLLL
VDLPASI
>Copia32-PTR#LTR/Copia 89-4492 via tfasty with ATCopia72_67-4476, 2 frameshifts and 1 stopcodon. [Populus trichocarpa]
MAANDIDFLSSGDSSSAPSTLGSPLFLHHSDHPGLLLVSKRLNGDNYNSWHRAMKISLSAKNKTGFITGKIKEPHEASNP
EEHALWQRCNDMVLSWILNSLEPELADSVLSCNTPYAIWEDLRERFSLGNAPRIFQVQRDIYKIEQGQMSVAAYYTKLKG
LWDELVSFNSETCTCGAQNDRTKLIQFLMGLNESYSGARGQILLMNPLPSVRQAYASVVQEEKQRELGSAVTIPSNTAAM
VVRGNYNMSKGRHNNQVHGNQSNNSRNKEPFQCTYCGDMYHRKATCYKLIGYPPGHPKSKEKAPHQRQGYDRHNSHSASG
NPSANQVDFSPTFQELQVSLPNLTEDQYVQILSALTTKPVTPQANVVADSTFKHTSGLLPVAHNRWILDSGATHHITSSP
TLLKHVNKNQSLAPVSLPSGDVAKITVTGSIQFNNSFQLNNVLCVPSFKVDLMSVGKTTDDLHCSVMFFPSWCILQDLAT
RTMIGVGKRRDDLYYLVALASTPPSTRFVCNLIISSNLWHRRLGHLSSNRLQFLADNSLKFNFDSSHKCEVCPLAKQTRQ
PFPSSSISTSKCFSLIHCDIWGRYKTPSISGAFYFLTIVDDFSRFTWVFLMCNKSETQTLLRQFFHYVHTQFNTKVQKLR
SDNGAKFLSFKFFFLEEGVLFQYSCVYTPQQNGVVERKHRHILETARALRFQSHLPITFWEECILTAVHIINRLPTLLLH
KKTPFEILYNKLPDYSRMRVFGCVAFATIVNPSSKCSPRAIKCIFLGYPIGQKAYKLYDIATQKIFTNRDVVFLEDTFYH
PPQVNPPAHNPPALSIPLPIVSDSYSHLPPSSVIIDPFDPPISSSPAPTDSIPSLPEPPSSTPLTPPIAQQTPVQPDDPV
FPEPTLVIPDQPLRRSQRPREANVRLKDYVCSQVILPPHQLFSASSAPTPGTKYPLCHFIFYNRYSPSHLCYIANVSRDE
EPLSYELAMTDPKWQEAMNSELKALIDNQTWSLVPFPPGKRPISCKWVYRIKRKADGSVERYKARLVARGFTQTAGIDYH
DTFSPTAKMVTVRCLLAIAASLNWPLHQLDVNNAFLNGDLLEEIYMSPPPGLRRQGENIVCRLHKSLYGLKQASRQWFSK
FTEAVLALFFxSKADYSLFIKRDGTCLTILLIFVDVILITGNNIESIKGLKQFLHTRFRIKDLGDKKFFLGIEIARSKKG
IYISQRKYALEIIKDSGYLGAKPVEFPMEECRLSNTGELLKDPCIYQRLVGRLIYLTITRPDITYSVHILSRFMHEPRQP
HMAAALRVVRYLKSAPGQGLLLHSNNSLHLRAFCDSDWAGCPVNRRSTTGYCVFLGNSLISWRTKRQKTVSLSSAEAEYR
AMAGTCSELTWLRHLLADLHMPVSDPVTLHCDNQAALYIAKNPVFHERTRHIEMDCHFIRDKILRGEIATRYVISSQQLA
DVFTKALGKEKFKQLMCKLGVIDIHSPT
>Copia43-PTR#LTR/Copia 3749-8279 via tfasty with HOPSCOTCH_ZM, 1 frameshift and 3 stopcodons. [Populus trichocarpa]
MDNQELQHGAGVAPISQSSLAAATASIVPMNSSLDIMNRSAIIPLSNMQQVISLxLSNTNFLYWRMQMKPFLLGQGVYSF
VDGTSPCPPSHLISTTTSLPSVNPSYLLWTQQDHLIMSALLSSLSIKVLHLVVDCKTSQEIWTTLETALASPSNSRIMQL
HSAFQDLRQHDDSASTYLQKAKALFDELAATGRPISMAEFNLYVFRGLHSDFKDLVTSLSTKADPISYTDLHSHLLTHEF
LHKASLHLAVTAPLLPTPSQQPFAFFGQRQFGSSTGRRGRFRGGWRQSNCSYNRGNHGYSSDSQIISYGYGSGLKFGQQQ
NRFSSGSGQQFGQQGNRLGGYNRTAKCQLCYDYGHTAQQCSQLATHNLQANANLAFNNAPITAPVTWFPDTGANHHVTPD
LASMTSSEPYCGNDHLHVGDGKGLTISNIAHSKIRSPKRTFTLSNILHVPHIKKPLLSVQKFCLENNVFFEFHPFLFYVK
DLMTKEVLLSGRSRDGLYILSASSAMSLPQVFSSTCVSTSTDVWHRRLGHPSPRILNFLVSTKQVSCTSKQFNFNCLACP
LGKSSRLTLKTTGHQTQAPLDLIFSDVWGPSPMFSSDGFRYFVIFVDAHTKFIWFYPLVVKSDVFAIFHQFQALVERQFS
LKIKSVQTDWGGEYRKLNTYFKTIGIQHRVICPHTHEQNGMVERRHRHIVETGLTLLGQCKAPLKYWSYAFESSVYLINR
MPTAVFNHKTPFECLLKSTPDYAFLRTFGCLCFPFLRPYNAHKLDFRSSPCVSLGYSNSHLGYRCLDLSSNRIYLTRHAC
FHEIVFPLDKTEQIVDSPIQPPAATLEPIPSSYPNTHPTPPAHNTSLWAPLSLPAYHCHDHSSGTGSDLSFSLAGSTTVS
PVVPTSSEQSVEVTPAGSPVSSPIRLPRSExIMTVSPVVSPSRFVSVLSSSSPGSSSISSLGLNLCVDLSQFSLQQATTS
ESATPPPAARTHSMVLRPRVSKTANFSVSPASRVVSLPQQEPLSFKDANRYLIWHNAMTEEIKALHGNHTWSLVPLHPSM
NVVGSRWVYKIKRHADGRVDRYKARLVARGFTHQEGIDYLETFSPVVKPTMVRLVITIAVTHGWKIHQLDVHNAFLNGIL
QEEVYMAQPPGFVDPTLLSHVCRLHKSLYGLKQAPRAWYNRLSEFLISIGFQASKVDTSLFILSFGGAMIYLLVYVDDIL
LTGSDSALLQRLITLLSSEFKLQDLGSAHFFLGIEVKSTSMGLLLSQHKYTLDIIQxIGMTSCKPVDTPLSPSSKLGSVP
GTLHSTPTRYRQIVGALQYLTFTRPDICYAVNKVCQFMHAPTEDHWAAVKRILHYLQATATYGLHITRDSSLSLHGFTDA
DWAGSIDDRKSTGGYLVYLGSTPISWKSGKQRTSRSSTEAEYKALADGTAEILWIRSLLSELRLPSSPSTTLWCDNLGAT
FLYANPVFHARTKHVEVDYHFVRDRVAKKEIQVRFISSKDQLADVLTKPLPLVSFVFFRSKLQVESPPSA
>Copia42-PTR#LTR/Copia 682-4689 [Populus trichocarpa]
MADIPEEKSAGNASIPPQYIPVSNTKFEVEKFDGKGNFGMWKCEVMDMLVQMNLDFTLEDKPEDLDDKSWERINRLACSS
IRLCLVKDQKYAFSEQNSAKELWQALEDKFMKNSIENRLYLKKRIFRFQHKKGTSMNEHLNDFNKMIADLKNLDVEIDDE
DKALLLLNSLPDTYEHLVTTLLYGKEKIKFIDVSNALVNNEYRKKDQIVHKESTSEALTVRGRTNPRRFRGRGRSRSKSR
GESSNRRYLAKDECAFCHKKGHWKKDCPIKGNKEKDEPTVNVARDEDEQDSAFMVSSPENHSGEWVLDSACSYHMCPNKH
LFSRLEEFDGGGVLMGNDDVSEIKGIGTIHLKMHNGVVKTLTDVRYVPDLKKNLFSLGVLESSGYKIIMYGGVLRAIRGA
LVVLRGTRISNLYFLDGSTVTGTAAVSKSIEDDKADNSRLWHMRLGHAGEKALQGLVKQGLLKGAKTGKHGFCEHCVLGK
QTRVKFGTAVHNTKGILDYVHTDVWGPSKNESLGGNRWFVTFIDDFSRRVWVYMMKHKDEVLDIFLKWKKMVETQTGRRV
KTLRSDNGGEYTSDPFFEVCQDEGIKRHFTVRKTPQQNGVAERMNRTLVEKVRCMLSHSGLSKVFWGEALSYARHIVNRL
PSAALDGRTPLEVWSGSPANDYDSMRIFGCSAYYHVTESKLDPRAKKAIFLGFSGGVKGYRLWCSESKKVILSRDVTFDE
SGMLQQEKSQEKEKQSGDAQQVELETSVIPIKTVQTISTEGDSDESSDEEDATTPATTQQESIATSKPKRVIKKPARYCN
MVAYALPVIDDGIPYTYKEAVQSVESAKWNEAMDEEMKSLHKNQTWDLVQLPRGKKTIGCKWVYAKKEGNPGKDNIRFKA
RLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELAQLDVKTAFLHGDLEEEIYMSQPDGFKVTGKENWACKL
KKSLYGLKQSPRQWYKRFDKFMAEHGYTRSQFDHCVYFRKLLDGSFIYLLLYVDDMLIASKSKVEIDRLKAQLRTEFEMK
DLGEAKKILGMEIQRDRRKGTVCLTQTQYLKKILQRFGVDGKTKPVSTPLAPHFKLSASMSPRTEEERKHMAQIPYANAV
GALMYAMVCTRPDISHAVSMVSRYMHDPGKGHWQAVKWILRYIHGTTDIGLKFERDDRLGQNLVGYVDSDYAGDLDKRRS
TTGYVFTLAKGPVSWRSTLQSTVALSTTEAEYMAVTEAFKEAIWLHGLIEDLGIVQEHMDVHCDSQSAICLAKNQVHHSR
TKHIDVRFHFVREIVDEGDILLQKIGTADNPADMLTKCVSGIKFQHCLDLVNISRC
>Copia19-NVi#LTR/Copia 3-2656 via tfasty with Copia5-NVi, 1 frameshift. (fragment) [Nasonia vitripennis]
RLWTQSTQSRMCSLSSPTPSDVSGKFFHSDVCGPMPVDSLGSARYFVSFKDDFSGYRYVYFLKHKSDVYDRFKEFERLIY
NKFGHSMKVLHTDNGGEYCNALMKNLLEEKGIKLETTAPYTPQQNGRSKGDNRTIVESVSTMLLRSQAPQYLWAEAVSTA
VYVLIMTVTKRKPDTTPWECWTKRKPDYTHLKIFGCLAFEHVPKALRKKFAKKANKVIFVGYEKESRNYRLYNYNTGKMS
VSRNLTFDESWFIEAIKPAEIVIFHAPIPDNGPSEENFKATDNIGGTEASESIHEAANEQEKSPSKQPQQQARTQRPASG
NTNKKIDLCKVQKPDCMPELSSCRQLRIRENIKRSAKYEANFIKIHEPDSYQGAMAGPNAAHWKVAIHEELLTHDKNKTW
TLVARPNICTVIDSKWFFRVQEAKAGKENRLKARLCARGFRQKYGINYQETFAPVVRYDALRVMLAIAAHRDLEIIQFDV
KTAFLHGQLEEDVMEIPEGLSDFYNISDKNLVCKLNKSLYGLKQASRCWHTTFKAFVSEYGFDCCNAESAIFVGRISDVV
VYITLFVDDGLILTKDCNVIDKVVKILKNRFEIMVCELDIFVGMRVVRDRVRKTIFLHQTEYAYKVLKRFDMLDAKTSCT
PVEKGVDLVFMKEHESNHEKLPYRELIGSLMFLFTVSRPDIAYDVNLMSRYLDNFNRNHWEAAKRILRYVKGTLNYGILY
KSSGSMLKLEAYCDSDYAGDQDGRRSTSGFIFKYCNGPVSWCAQRQRTVSLSSTEAEYISASSETREAMWLRQLQYDVGS
PCAGATTLYIDNQSTIQLMKNPVFHRRTKHIEVHHHYVRQKYEAGVIKVKYIPSELQLADIFTKALTREHHERMYEGIGL
CSIFV
>Copia6_TP_gag#LTR/Copia 19-1938 Does not match anything yet but itself in TP database, REpBase nor nr. [Thalassiosira]
MARTRKTAGRADDEAKQADDVDVDAENSASEDEDAEAVADGDDAGGAQGDERQPTVAELAAMELSSDEDDDEADGNSGDV
SSIVTDTRQEPSLQAPMVHTPIVDGEVTFESVRVLIDGPRPASLTGDDGAYGQSMYYALMSIGFSLEAAHAMMHRESLNT
ADKCADLDGSTIKAALKGLSTDLKGAIKDKYGLLIKPVYVPAVTQTNFYALCRKFKFVKLTEGMVYPKDVGHKIGTIPEF
VQLNKILGKFEYSETSMFTNKPELDKHDHAKNLADLDDFLRGIRTTSGTSVAYLARRNKKVPIVKARLSCDSIDDYMITH
TLIVPRRENDTFMNHRIEEEYARLLSQEVGEANRLLYRALEYFYKDTDSMVIIKAYKKTADGMGAHIALKKRYMGAEWLS
HSTEDAISNIEHARYKGESRSGRHSWDAYCKVFDKNWQIVQNNIASGHNRTFPPEYLGEKFIRGIDEGISTKMDAALAAA
QGDKKLLSDINALQNRIYTALPAASGNRRDKRNVAAVAGKGSSPGGKKKARFTGTLDPDVHYKPKEYRKMTQGQKNKLYA
MRPPKDEDGTSGSAASVPNSKYESVRKERNEYKRKVAELTSEQKSGRSNSRSRSSSVSPSPAKRSSSKSRAIRRKS
>Copia4_TP#LTR/Copia 191-5088 via tfasty with Copia1_TP, 1 frameshift and 1 stopcodon. [Thalassiosira]
MSGDSRNVQYPKWDGKASTCPRYLDHVESLAVFHDCGDAFDKTTMANCPKKSEFDILMGQSTKTDDDKEKINLYKQNRRM
CAILKLGQESDHGLAIVKKSVSVDHPNGLAWKIVKHLTDKYRPNDVAARIQMTNALKKLKFGDANKYYNDVVGVCAKFNV
VKSETEMIEIMADAVTDPVYSQMVLRHLESSDADDLEQLCLEMSKLQRITKTSEHVPEDKKQKEVQLATTDGNSNSGGSF
NGICRNCNKKGHKKAQCPEKKSKSYKNDGDSKECAGCGRKGHSESHCWKKHPEKAPKWFKDGSKTESASGVNVEVCLSQL
DVTGQDFAxACQIVRSTGEADDDFDAELDVGNVLEAEKPETAAAVTRTQWLADGDSTVEKPERTTAVITNTPWLAGNVSE
TEKREARAVKNTLWLADGDSTVEKPRAVKNTLWLALEVMYAVVCVIAVTGWLVLDFLKDRVLTVVAGRLDVDVSAAKLET
VGSFGMLQDNDTWICDTGATGHSTSNNIGARNAREAVSVSLGNAGQAIKAQSVIDIAGQFVNNDGTSGIRGTLKDVSYHP
EFNFNLLSLTKLLTDGWEIRTGNGERIVVVNKVGDVINFDLKIPTARGMLLACRFIRDVEIGAASTSTGLKLNIHKAHRL
LGHRSEASTRAIAAMLGWTITRGTLGPCEFCARGKAKQKNTNKNRDESVEKVTVPGELVHLDLSKVTVHEDDGSEFDLNH
KYWKILVDAATGKKWSHFTTTKSGMVEPTCEWLNKCKTRGLNVKAIRLDPAGENKKLEKRAQSVEWQSLQPLDFQFTSRD
TPQHNSDAETSFPYLAGCSRAMMGAAYIPGGVRGKVVIEALQCATMLDGLVAVTVNGVTATRDEHVFKSNPKWANHLRTW
GEAGVVKEGKRSKTGDRGKTMMFVGYAADRESDSFRMWDSDTNRVVVTRDVIFLKRMFFERPVHESNYLMDEMSEETRTN
VRKEASEGIDGDSDDEDETPPDDRDSDEDESEAGRVDDDDAIATRQSRVGRVCRTPEWLKDYETKLVNSEPGTFAEMRYL
CLLAECHNDELFTVMKAYNDMETMFIGAGVGGGFSNTNELKVMNFKQAMASDDADEWNDEIGNEHKRFKKFNAVTVVKRK
DLPKGAKVCTTTWAMKKKANGTYRGRLNVCGFEQVEGMHFFVDSIAAPVTNPNTIRFCLVLLECMPLWISRVLDVEGAFL
QGQFVNGEVIYIGVPDGMEKYYGSRDDVVLLLNVPLYGTKQAANCFYTSLRKSASKRNYKRSRADPCLYYIWTDGRLALF
ATWVDDIIVFGHPQDVDAIEKNLKEAFVCKSEGELKEYVGSKIDVMRKSNGLATIKITQPVLIQKLEDEFDVSTGKAPGT
PARPGEVLSKLHGGELLTSAAATNYRSGTATLMFIMQWSRPDIFNATRGCARHMSAPGTVHNDALYWLIHYVISTRNRGL
VLEPDRVWDGSSKFKFRIGGRADSNYAANEDDRRSVSGGRVRLEGCPVTFRSATQRFVTLSVTEAEGAAGNMVAQDMMYL
YRSLTEIGLSVELPMVLEMDNSGAVDLANSYSVGGRTRHVDVRLYYLRELKEEGLLVIKHIPGENNDADIFTKNTDARTF
ERHIPSFVGKDEYMVGGEEDVKKPRRVRFANGS
>Copia8_TP#LTR/Copia 576-4038 714-4038 via tfasty with Copia7_TP_775-4196, 2 frameshifts and 1 stopcodon.  [Thalassiosira]
SGGTLQFTAAIGCTTAVACDTACQLFTAVTVSATHAEAPKGVSPELLSKIWRINQQTAKRTLEVTSQLNKQDGDSSLARN
FSTNDRMQRYRRLKSFFFSDTFFVTKEAKSTRGFTCMQLFVSDKGFIFVVPMKSVAEFPHALRMFAKEVGVPQALIVDPH
RAQTSKEVQQFCHKIGTTLRVLEESTQFANRAELYIGLMKESIRKDIRETHSPLVLWDYCAERRALIFNLTAKNLFQLQG
QNPYTATFGEEGDISNLCQFGWYEWVYFRDGSQAFPTMRECLARCLGPAKNEGNEMAQWILIDDAQIVPRRSLHRLSEAE
LNPTNEIELRKRKAFDNAIAAKLGDSFSLPPTPLTSHLDDDNAAFVPYEDDEESPIEMPDADAVDAAGTPVMQQSLADTL
INAEVLLPQGESKQLAKVIRRSVDADGHVIGMFNKNPILNTLLYDVEFPDGVTKQYAANLKTYFAKCDSDGRYSSFVDGI
LEYRRNKSAVTKENQYVVTKRGRRKLRQTTVGWDFLVQWKDGTTQWLPLKLLKESNPVDVAEFVTARGIADEPAFCWWVP
YTLRKRDRIIASVNSRIKKRNRKYGIEVPTSIEDARRLDKENGNTLWQDAIAKEMYNVSIAFQILEPGESVPPGWTKSSG
HIIFDVKMDFTRKARWVKDGHRTPDPESSSYAGVVSRESVRIALTYAALNDVDIIAADIRNAYLQAPSSEKHFIICGTEF
GLEHVGKKALIRRALYGGKVAGRDFWHHLRDCMGHLGFRSSKADPDVWMxPTVRTDKSEYYEYVLLYVDDCLVLSEKAED
IIRKEIGKYSELKEESIGPPDIYLGGKMRRVVLDHGSKAWAFGSSQYVQHAVKNVEEYLKGRGESLPARASSPISNNYRP
EVDVTEELEGETASYYHSLIGVLRWIVELGRVDIDVEVSMMSSHLALPRKGHLQQLFHIFAYLKKHHNAEMVFDPSDPVV
EPSQFERQDWSHTVYGDDLVEELPPDMPPPRGQGFRMRVFVDSDHAGDTVTRRSRTGFLVYLNCAPIYWLSKKQTSCETS
TFGSEFVAMKQATEYVRGLRYKLRMKGIPVEEPTLVYGDNQSVLANTTLPSSTLKKKSNSIAYHFVREGCARDEWSDEWR
TTYINTHLNPADMLTKPLPPGEKRSKFVRMVLHHL
>Copia13-NVi#LTR/Copia 2104-6990  [Nasonia vitripennis]
MNQNFERFTTKISGDVQQLMRSVDSLKLRGQDGQAVKDWQEKPTLSANNKPSIVSCTRPAEPIKLHPRGRGRGFRPANRN
PLTLLAPGPRELGPAEPRCSSTLVADSYEWNEKNEVRREQSPYKDWRVESAERLGIALDDLNVSRRFSDQDLTQLNKLNL
FKSMNSGNTSINDAKLKQINITRMYKLKLDSEFAPFEDFLFSELKSRKLFYVFEKNNQSLICPDELEHDKNIIREIILNR
IDDKYHLYTMNIKDPVELLDKIKEIKKNELRINAHTAQKRLFNLKLNKDKETAFNFCLRFEDLVRKYESNEGIEKMSDTA
KKSLLFNAVEQAYPEIITAENVASHGTGRKYTYNELKDLIFQIDNSKQRTPEKSALLGFAEERNRSSDERSKSRERPNKR
CERCGSTAHLSKDCKHDEPKCFNCNKFGHIAVDCSEPRKEPPRKRATDRNRSISPKRKQRREHSRSRSKSPFRRPGTPAK
GTTNTDSVCMNVSLNEWDDETQKFIVDSGATDHMTNSKLILTQLHEKTERVIGCANKDKRSNIIATNQGQVKFELSYGNV
IKLDNVVYAENLRKNLLSLKRFTDQGLCVYLDNKTINVYEPNTREKILEGKFENPFWIIDLKPKLDNIQKMPSGALIAHE
SNEKIVKKKVTFADEKSVIDSANQRKENGDESTVINTINLWHIRLGHTALNKVKLLKGLYPDIKQFRENDHGVCLKDCEI
CKVAKMNRPKFDNNKEMAKKPLQRVSADTMGPITPATHPKGCRFIVVLVDNYSRFAMAYPVKQKSDAAECIDDFVVKCRN
ICGRDEKFCYLDCDQGTEFTSGKTQKVLDKYGAELRTICPYTPQLNGIAERYNQTIQKITRALMYDSRLPANAWDLAVKA
AAYLYNLTPHKSIGLKSPLLMINPESKAYINQIKRFGCVAFTKVQGQQETKFDKLSNKTVLVGYTDTGYLLLNPEDGKVY
ESRNVQFIESKVFGDIYKPEDIKNWTITNDTLNKETWLFEFDEESPDQPEVVIKAPKKKGRPRKENQKTAMKPISKINHR
PVTRKQTQSKKIVSAEKAQGETEGLNIYDPDALMTLGTSESEKMQDKIEGLSEYELYTLLTGINGDPKSYREAVSSPEAD
RWQEAINKEREALQKNRVYEVVSRTSCDGKKLNILDSRWVFKRKDSGTKYPDYKARIVIRGFKDSNLYDLCETYAPVSRL
ALVRAVLTTANKHDYVLWQLDVKAAFLHSPIKKDIFLEIPDGFEEYENQKQTKVWKLHKSLYGLKTSPKNWNEYFSEFAK
QLKFQANSRDPCLFIYAEEKSRIIMLLYVDDILLTGNDEPKMREIQKELSKKFDMKFLGEPKEFLGITITRNSKERTIKL
DQIKFINKMQTKFGYAQAKGQSTPMVTNQVLNRQRKQREEESTNDKAINQRGYREVVGSLMYLMSGTRPDLAYAVNMLSR
HQQNPTEHDWKMVTRVFKYIAYSKNWQLTYKGLKDGMETFSDASFADCKDSLTTSGHVVTLYGDAIAWRTHKQSYVALST
CQAEYVAMGDACRESISISLSLKVIPNMTYFPIILWCDNKAAVACTKMDGSNKLRHMAGVYEDYVKQCVKLHYVKIEWIE
SKEQRADIFTKPLPSDSHNKLSRLLLGN
>Copia12-PTR#LTR/Copia 69-4568 via tfasty with OSR3_409-4902, 3 frameshifts and 2 stopcodons. [Populus trichocarpa]
MAEYSTELIQPQNPITDSMLDNFTTKMTEALTKAQATSQPIINDSSAAPTSIKLDGSNYALWSQVVEMNISAKDKLGYIN
GDLPQPSETDPTFRKWRTENSVVKGWLINSMDQSLVANFIRFLTAKQVWDAIATTYFDGTDTSQVYELRRRVTRMRQRGG
SIEKYYNDLQGIWREIDFRRPNPMECATDIAKISLWIQEERVYIFLDGLDDRLDNIRSDILQLKPFPTIEQAYAHVSYAH
VRREDTRQAVMTAGAETTTSGAVMAIKGSRFGQPPTLVMGKHHLSSKPKGPFDGGKCTHCGNTKHTRETCFKLHGYPEWW
HELQARRKKGNTLPDEGIGRAATVTAEPQLSLIPMADSSTSKATGNCGQSFYSSSHQNESEWIIDSRATDHITFDPADFS
HTTQPQRTCIANANGVAYPVTGAGTVSLSSSLTLSHTLLVPSLSNKLMSVSQVTEELNCVVLIYSNVCFLQDVLSRRLLG
VGTKRGGLYYLDDFNHGKANHVHHQLSSKEREIWLWHRRLRHPSFGYLRHLFPNLFLQSKDVDFNCKTCILAKSHRNSYH
ASLNKSSISFALIHSDVWGPSPRTTVTGYRWFVIFVDDSTRMTWLYLMKTKEEVFPIFQAFHTMIxNQFSAKIQVLRSDN
EGEFVNQRFKAFFQQQGLLHETSCAQTPQQNGVAERKNRHILETTRALLLGTNVPTHHWDDAISAAEYLLNKMPSKVLHF
KTPLQVLSSHVALPTVLLLPPRVFGCVVFVHLHKNQRSKLDPCAVKCLFLGYRPTKKGYKCFDPINKRLYITMDATFIES
EHFYSPTVPNLALQGECKREELNELNWYLTAPATVSTTDNSTNPAATSIGDSPAQAGERELEEAENDVKGIHENQLKETE
NDVEGIHENRLNGELVNQESQPTPLSAVPESPTENNLEVSSSTVPPYTSDLNTPVEYVLPFRHNRGKPPNRYSPDTEERR
SKFPIANYVSTQHLPDPIQSFTEVLSSCHTPDNIADALADPKWAQAIQEEMEALQQNNTWKLIPQPEGKKTVGCKWVFSI
KYKADGSIDRYKARLVAKGFTQTYGIDYVETFSPVAKLNTVRVLLSLAANLDWLLLQLDVKNAFLHGDLEEEVYMDIPPG
FTSSSGTGVVCKLERALYGLKQSPRAWFRRFSSAMRRYGFVQSNADHTLFLKHRQKRLTALIVYGDDMIITGDDTEEMSK
LQEQLSAEFEMKNLGGLKYFLGIEVARSQKGIFLSQRKYVLDLLSEVGLLECKPVDTPIIxNHGLTEHTDQVPTDKGRYQ
RLVGKLIYLSHTRPDIAYAVSVVSQFMHNPSEEHMNAVIRILRYLKSSPGKGLMFSKNNRLDVEGYTDADWAGSILDRKS
TSGYFTFVGGNLVTWRSKKQKVVARSSAEAEFRGMAKGLCELLWLRRLLMEISYGPNIEMNLFCDNKAAIDISQNPIQHD
RTKHVEIDRHFIKQNLEEKIIQFVFVKSENQLADILTKAVSNRIFHDSLDKLGIKDIYAPT
>Copia-16_EPa#LTR/Copia 25-4033 via tfasty with Copia-4_AT, 81.5% SW:3863, 1 frameshift. [Eutrema parvulum]
MSGSMAKIEIASFDGQGDFTMWKKRMLAHLSILGLKDALVESPSQESGLTMKKGEDEEEFKDRLQKAESDRQERAEKAMN
MIILNLGDHVLRKLEDYNTAATIWSALERLYNSKTLPNRIHMQHKFYTFKMLESKSIDENIDNFLKLVSGLSSVKVTVSE
EVQAILLLSSLPPQYNQLKETLKYERETLTIEDVTNAAKSKEVELKEARDTASSQRNGEAYVARGRPEKRDTFKTKGNHK
SRSRSRSDVTCWFCKKEGHMKKDCFARKRKMENEDHGEAVVMVDKLLEIDALSIADQNPRDKWVIDSGCSYHMTSRRDWF
HEFAEITGGQVLLADDRSITVQGIGSIRINAKGGSVKQLSNVRYVPNLKRNLISVSSLDLQGFKQDGGDGKTRFYKNGRL
ALQGTLCGSLYLLDGETVTPEVNAAISKDDTVLWHSRLAHTSIRNLRVLAEKGILNKKKISDLEFCESCIMGKSKRLSFN
VGKHNSEEVLRYVHADLWGSPNMQPSLSKKHYFLSIIDDYTRKVWVQFLSSKYEAFSKFSEWKSLVENQVSKKVKCLRTD
NGLEFERHRTCSYTPQQNGVAERMNRTIMEKVRCLLNESGLEEKFWAEAAATSVYIINRTPSSANDFNIPEELWLGKTPG
YSHIRWFGSLVYIHADQGKLKPRALKGVFIGYPQGVKGYKVWLLEEKKCVLSRNAVFNEEKLYKDLLPGSKAEETHQEKD
KTEINEVTINRNDEDNSSETVMSETPEARTVETTHDSPEEEEEDEEHEDLRDYQLARDRTRRNIVKPARFTDDSTIAFAL
SVAEDVSSDEPRDFYEAMRSKDKEKWKEACEEEMSSQKKNRTWVICDLPEGHKTIGCKWIFKLKPGIPGVEKPRYKARLV
AKGYAQREGIDYQEIFSPVVKHILIRLLLSAVVNQDLELEQLDVKTAFLHGNIEEDIYMDQPEGYEIKDRRNKVCHLKKA
LYGLKQAPRQWNKCFDQFMVNNGFMKSELDPCVYLKKPKSKVHIYLLLYVDDMLVASKSKSEIDDLKKQLNREFEMKDLG
PAKRILGMDIERDRAGGVLTLSQAAYVKKVLQVFRMDEAKSVSTPMGAHFKLTSIKSEEEDADGDSGEFPNSNAVGSIMY
AMIGSRPDVAFAIGLVSRFMSNPSRTHWTAVQWILRYLKGTEDRCLMFKRNTGEFKVEGYSDSDFAGDMDRRRSTTGYIF
TAGGNTVSWKSGLQPVVALSTMEAEYIALVEAIKKGIWLRGLAEDLGFNQESVNVHCDSQSAICLAKNNVFHERTKHVSV
SKHVAVKMSFVREMIESEELSIQKIHTSKNPADIFTKCIPVQKFEQALALLKVARL
>Copia-16_DPu#LTR/Copia 574-4866 via tfasty with Copia-9_DPu, 2 stopcodons. First 60 AA or so appear to be between pos 100 and 250. [Daphnia pulex]
LFLSPLQRRNDAQAIVNAADITNWEKKNTRAMQNIFGAIKEEQSRILMTCNSAREMWIKLESEYEEAAADSIPLLWTKFY
GCTFRQGQSVSSFLTELEQIAFRLKSLNIAIDDEQIMAKVLMSLPAEFRVFGFAWESTPVAEKTLKRLTARLITLDKSMR
NDEEKRSTPDAAFLSKNKNGAEPHDEESRECALPAQFDRGKRGHSSHQQSGATKECWECKSTTHVRAQCRQYKRRREKEE
DEADRKRKRFDRNDRRDSNRSRDQRDKDRHRRDDSRDEKDYQKERKGYSYTSSTDRKVKKPSTWYADSGATQHMTDNRAL
LTNFVPTGPEKWSVSGIGESSLTVAGQGDVILTATVNGEHLHGKMRGVLYVPGLGINLYSIGTATDAGLKVVFDDDTVSF
SQDDVVIMEGKREGKKTLYQLNIQAKENHHTVERALSAAQVASLSLWHQRFGHLNHKTVLRMATLGSVAGLALFNDKLHL
STHCRGCLLGKMSRTSFLSTRTRGTHVGDIVHSDVCGPIQICTPSGARFFFESLCNFITTNFAHGFSVLLLRFFVTFKDD
FSSFCEIQLLKRKSEVPEAFMKFNAKMKAETGRETKILRSDGGGEYCSKDFENWLAKAGITHQVTPPYTPQLNGVAERTN
RTVIESARSQMYGKKVPLELWGLAVLCAAYVQNRVISSIGKVTPFELWHGKEPDVSHLRTFGSPAFTHIPDEKRRKLDPK
ATEGIMVGYGDSSKVYKIWDPVTRKIITSRDVVFEENLNHENSSELQELDYYSLLPLSPDEQMPESLLDEQIPTDQPDVN
MGADDGASQPNDPVIDGLGEAESNETNGETEDEFFHGFEPVADPVGHLRRSLRTARPSEKYLLYRGYHATAPGHRTSTDQ
PEKKIYGKLNITLSAALSSPQGPLWKTAVEDELNSLHKNETWELVPLPPGRTPIKSKWIFELKPGYDGVAERYKARLVAL
GCSQRAGLDYNETFGLLFTNxFxFVICLIFVCYSLAPVVRLSTLRIILALVAVCDLSVIQLDVKTAFLYGRLEEEVYMCQ
PEGYAAYGREADVCRLIKSIYGLKQAPRVWNMELNDAIVTYGLTRSQHDQCLYFRLQGEEWMAALFFVDDAIVCGTNNKA
LDDFVTYLKKMFELRTLPVGRFLGLTIKRDRSTRTLSLSQPDFVDDLVARFKMESCHPNVIPAEPGLHLSSAMAPKTKEE
EEKMKEVPYQSAVGALLYLSTTTRPDIAYAVSKVARFNQNPGPQHWIAVKRIIRYLAGTKDYGIIFSSTKEQGALGFTDA
DYGGDHDDRKSTSGCIFLLNGGPISWFSRKQECTATSTTEAEFVAGSEAAKEGTWIKSLLEEIGQGKPGPITLFCDNQGA
IKVAYNQEMHRKMKHIAIRYWYIREAQTNGVINTSYVSTQEQLADTFTKPLPAPRFKYLRDKIGVRDVGAL
>Copia-17_BRa#LTR/Copia 146-4462 via tfasty with Copia-106_BRa, 84.3% SW:4894, 1 stopcodon. [Brassica rapa]
MTDIGSTPKRRTISPYDLTSGDNPGAVISSPLLNGTNYDEWAINLRMALSSRKKFGFIDGSIPKPPADSSNLEDWIANNH
LLVGWINKTIEPKLRSSISTREVAQELWEIIKKRFSVKSGARLQQLRNSLATCKQNGTSVDDYFGRLTKIWDGIRESMNS
KKCTCGKCECDLNAAHESDRETLRVHDFLSGLDDSAHGVIRSQICAITPLPDLDSVYQTIVQNETIRSNVTQETPAMSFA
SQVTTPTYNRDQTFRPVNKDPSRKCLVCGKMGHEASACFKVVGYPEWYGTSGRGGRGGSGRGRGSMPRVNSTQIIGVNAA
AVTPVTLTEADRQGLSGISDDQWKIIQRMVGSTSKQDSLTGKPNCNEWILDTGATHHMTGLAECLEDIRSILPVSVRLPT
GTNSLASKQGTIRLNPHLILQNVFLVDEFDTNLISFGQLVTDNGLIGQITDKLLILQDRNTKTLIGMGEREREGLYRLCC
AAPILSSHTSVGEDSILWHRRLGHPSSRIVSLLPGVSSHKDSFKNCDVCFRAKQTRQCFSESSTYSNAIFDLIHCDLWGP
YRTTALCGTRYFLTILDDHSRAVWVYLLQDKTSVSRHLMDFIALVNTQFSKKVKTIRSDNGTEFVCLSxFFQENGIHHET
SCVYTPQQNGRVERKHRHILNIARTLRFQAHLSIEYWGECVKTAVYLMNRIPSQLLDGKTPFEKLYGRTPSFNHLRVFGC
LAYAHNINHKGDKFAARSRKCIFLGYPAGKKGWLLLDSETQSIFTSRDVVFCEDIFPLAASSDKSDNHEPVSELQEATLD
DTDSDSGTSDDVQPETEEGVLDTAPAAENIPMAPAEVPEEIPPTVEINTPATEVDEVLGRGHRPKIPSTRLRDFVVNTVT
LDSSLSLSTTSPSPQLSSGSVYPISDYLSSHKFSDQHRSFLVAISSHHIPKSFKEAILDKIWKDSMGTEVTALESQHTWD
VVPLPPGKKPLDNKWIYTIKYRSDGSIERPKSRLVVCGNRQKHGVDYTDTFSPVAKMTTVRVFLDYACKLGHEIHQMDVH
NAFLHGDLHEEVYMKIPQGFSSTDKNLVCKLRKSLYGLKQAPRCWFAKLTDALLKYGFTQTKSDYSLFVYVKQGVSIRIL
AYVDDLIISGSTPKDIKLIKDYLSTCFHMKDLGLLKYFLGIEVARSPSGFYLCQRKYATDIVTEVGLLGCKPAGAPMDQN
HQLSRADGPTISEPERYRRLVGRFIYLAATRPDLTYAVHILSQFMQDPKEDHWTAALKVVRYLKGTLGQGIFLDAKSSLH
LTGWCDSDWGGCHTTWRSLSGWIVQLGTSPIAWKSKKQDTVSCSSAEAEYRAMGAITKELLGLKSLLRELGVNHKEPMTL
FCDSQPAIHISSNPVFHERTKNIEIECHFIRDEIVKGVLKPSYVSTKEQLADIFTKALGRKEFDIFLSKLGIRNLHAPP
>Copia-17_PGr#LTR/Copia 268-4397 via tfasty with Copia-129_AA, 63.4% SW:1307, 1 frameshift. [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MTETTNSTLKHFTEKLNNTNFAQWRREIYTGLSYQNLDDYLVEETKELKAKPDYALKKKQATNIIRMHLDGENFARFVQD
DELGTFEPKTLWDAICQHYARKSLENGAKLMEKLNSFEFTDDNISETINQFRVTFQLFAEVTAKKFDRKTVEGLWVFWVL
IKLPSSFNVFKTLQFVALNADDADLSMSNFLGVLELELKRQNEPITSTSTTALAVNNQNRSGNQPSTSRKKTNRRICTNG
VHNPDTSHSEENCHQLHPELAIAYHQAALDRINSKGNNPKNGLSVSNGLKDAIVLDSGASGHYLRHREYFTSLKTINSAV
YAANGAAIPIIGVGSAIIHTTVGPLEIAEAYLAPQLSNSLIPLTYYLKGGFSINPTHGGNRFECRSHNGVIFTGTTTENI
LLIDLNPLKALTVTPSSVLQLHQSLGHPSTNYLKKAYPDIVITSVDCNICDRAKMHRQPFSGSFPKMSDLLECIHMDLCG
PITPASRGGNKYFLKIIDGYSKYRFIYPMRCKSDTFRLFKIFLAQVENSTNKRLKSVVSDNGGEFVNRQFAQLFAEKGVI
HHTTAPYTPQQNPFAERGNRTTIEKARALLMMSGLALHWWGDAVVTSVYLENRTPDSSISMRSPFELWHGSEPDLSRLVP
FGCRTVLYDEKKWRNSKFSPSGVESIFLGYDEAHHSYKVWIPSNDTIKTSHHVKFSPSIFPQQKSTTTWSNQETDTPINL
HSLGEVITDPLITLGDHPIQLDEDHQSTSSPEPELEHSRSNSPAPSVTVLEGVVAGREPPTTSRESEPPSEDETNLNISS
VPSGSDSAPVTNKKGYAYVPFYETAPNDISSDIDPSKIIVGSRRKMAMLIIGEPSSPKDPITYAEAIGRLDGDEWLIAIE
TELNNIRRHEVWVVAPLIPGTKELDTVWVFKRKFNADGDLLKFKARLCVRGFRQIEGVNYNDTFAPTGRLATLRIVLGIA
VIRDWEIQQMDVKCAFLNGIPDEDIFIKVPDGVDIDLPQGYGLKLQKSLYGLKQSPRCWYRALKDFFVSINFAPAEADPC
LFIHQNKNQPCFIFVHVDDMVIIGPSVQFVKDSLAKRFEMDDLGDCTWVLGMRVTRDRDKRTVSLCQDRYIGEVLEEFGM
SDCRPISAPLPLNALTCPIDESPVDPKFNYRRAVGLLNYLVQCTRPDLAFASSYLSQFLNRPSKTHQNHFLHICRYLKYS
VNLSLTLGNVPGEDRLTAYADASYASGQQAASFLGSLVLFNGPMGWRCAKQDDDGPAMSTTEAEYRACSESGQDIRWAEQ
LLQDILPVLDVSELKAHLHCDNQGAIALLNNPLYQHRTRHMDVRHHWLRHHIQQASNFTLSYIPTNDNLSDLLTKPLSPI
KTRQFLKKLHLTIRQEV
>Copia-17_DPu#LTR/Copia 42-4476 via tfasty with Copia-5_DPu, 2 frameshifts and 1 stopcodon. [Daphnia pulex]
MAENSEGKRDFTKFNGVNFPQWKFAVMLILKQKKLYGIVLGYDRKPNEVCQEMEVERVKVTVITNQNEIDTWIDKDISAQ
GIIFYNIEPSFQVALEGSGSSNEMWNRLILQYAQVAIANADFLLGKFQLYKMDPDHSVMAHINRLKMMADELNSIECHVS
EQALIVRMLQTLPPSFRHFLSVWDSVPSAERNLVNLTARLVTEELRSKSLNNGQANPVDVAFLASHPNRVQKEAVANAAH
SKDLKRDYNPRNNNSNYRDNRQNYRDDSRCQSSRHRDNRPNQRNYHDNHRGGRSGNRDRGCFICGRTNHKAINCWKRKND
ERREARGNKFDRNRDSKHDDNNNDDSKESFAALSSVCFLARKPSYWYADTGASHHMTNQRSYFTSFEEISDSWTVNGIGG
VQVKALGVGTVPIVSYINGESKAGTLHEVLFVPDLGTNLFSVGIATDHGIEAHFAKDGATFVKNGIEVMSGKRLGKSLYH
LNVTATNSFEDCSTAIVATRSNRLLPLSLIHQRLAHLNNAAILKMSRSNAVIGLNLDPSTKHTPCEGCIFGKSCRTPFCS
STTKSTGVGHIIHSDIGEVPVPTPNNEIYYVVFKYDFSNWTSVVxMKKKSDATKLLMKFIAFVKRATDRNVKIVRTDGGK
EYDNDAINDFFASEGIVHQITNPYTPQQNGVSERLNRTAMESARSMMHIRTNKFTNLFKKADHSILELWGEFLRSAVYVL
NRTLSCSSSSNSSSKMPHELFFDQKPDISHLRIIGCHGYPLIPKAKHRKLDPKGIPCWLVGYGEETKGWRLWNPVTRKII
LSRDVTFDENLLISDFKEDSDPHATRQSQPNLINPYLLASKILGLPTECNSQLNTPAEKEQHVSENPATELMEQDLHQQD
PAQEDTAPADENAELGLPQEPSATAPEPQPTAPQRNDAENLRRTTRSHKYTARYEEFRRSLGLTATINEFKNGHFSALFT
ESFKPSSYKEALKSDQVEKWMKAFEEEYSSLIENKTWRLVTLPQDRTTLNCKWIGKVKPVYDNIQERYKGILVAVGCAQQ
PGRDYDQLYSPVPHHESIKAALTEIVFRNMEVAQFDIKTAFLYAKLDKIIYTEGFVVKGRENDVCLLEKSLYGLRQAPLL
FFKENDKVMHKFGLESCDGDRCIYIRRTGDELTIVITHVDDSFVASTRKEVLVDIATHMSNNFTISLVPPTRYVGLNIHR
DRATRRIFLSQSHMVEKLCKRFKMSDLPPKSIPADPSVHLASDNVSKGEGEKTAFPYPYREAVGALFYVALMTRPDIAYD
VGQVSKYCQNPNQSHWNAVSQIFSYLVGTKDYGIWLGGSQSGLVGYTDANFAGNRDDCRSTSGGIFFLHGGPVAWFSKKQ
PNIAQSTTESEYIALCEGTKSIVFQCRLQEDFTGVEQLKIPIMCDNQSAVRLSYNPEYHHRTKHILVRYHYTRQKVNEGK
IEIKYIPTEDQLADILTKPLPGPRFTKLRYRIGVRKHTD
>Copia-16_CP#LTR/Copia 212-4683 via tfasty with Copia15-PTR, 75.5% SW:3617, 1 frameshift and 2 stopcodons. [Carica papaya]
MESQNSYQTTANPNPNFRDLAITNLDPSNVNNPYYLDKSLNSTAVLVPELLNDNNYYTWAIFMERALSIQNKIGFIDGTL
TQPTDPTDPLRTHWKRCNDMVIIWIQNALSPDIKTDTFYAQTTHQLWHELEQRHSEQNATRVYQIKQSISALMQNQEPVR
AYFSKLKFLIDELINYEPIPICTCGGLKPIIGYQERDHTMRFLMGLNESYSNLTSQILAMKPLPSLNEAFSIIQQEEKMR
EISLKSVTNRAMAFSIKEANKPQRIASPNKEKYYCTYCKKTGHSLERCFKANPNRPVCTNCNLPGHTAEVCYRDKNQAKG
QRTQNKIRQPTINQVSSVDAQTELKGEEHNLLTKDQLHQLMAFIQRSQATVNMVQATSEQTQDQKLTAFSGMFSCFNVCT
IDRNINTHTTWIIDTGASDHIVHTPQLYTEITSNVRSKVVLPNGESVDVSHVGVVKLSDKLVLNNVLCVPSFRFNLISAR
RLTQDIRCCLIFLQQHCVIQDLLTWKTLGMGEIKDGLYQLRQPKDSENASQQIFAGMTLQSSSKEERDFDMWHYRLGHPS
FKSSFDFDMLANKDSKLCYVCPLAKMHKLSFFDSSNKAEQCFDLIHCDIWGPCNEISYDGFRYFLTIVDDFTRCTWVYMM
QSKAETGSHLQHFCTFVETQFDRKVRVIRTDNGREFEMKRFYDEKGIMHQKSCVETPQQNGRVERKHQQILNTARALKFQ
SGMDTKYWSDFVLTAAYLINRTPSSVLGGKTPFEVLHGKKPNYSHLKVFGCLAFASTLLSGRRKFDARARRCVFIGYPFG
TKGYKLLDEETGEVIISRNVIFHEKVFPHKEKKCIKDMQTIHESRNILIDELESNTFVQDNTRDQVMGQDSPDMEVRDLT
QIEEVSNNQEMIDGEGERREDHMNDDEIPRRKSTRTKRPPEYLKDYICDQIQGNNDCIELSDPQVRNGGVVPLSSTVAYS
RLMGGHKKYILAVASHNEPSSYEEASKDPNWRNAMENELQALEENKTWKVVDLPAGKRAIGCKWVYKVKFKADGTIERHK
ARLVAKGFTQREGLDYHETFSPVAKIVSVRVLLALAAIRGxHLQQLDVNNAFLHGDLNEEVYMELPPGHPKRREGKVCRL
QKSLYGLKQASRQWYAKFSEFITQQGFKQSKADYSLFVRTNGESFTVLLVYVDDIIVAGNDESVIKELKITLDNKFKIKD
LGNLKYFLGIKVARSKRGVHICQRKYALDLLKDAGVLGSKTSSLPMDQNIKLSKDEGEPVLDPTMYRRLIGRLMYLTLTR
PDLAYSVQVLSQFMESPRDCHLRAAYKVLRYVKGTPGQGLFYSNTSELKLNAYTDSDWAGCPDTRKSVTGYCVLLGNSLI
SWKSKKQQTVSRSSAEAEYRAMASVCCELTWIRYLLDDLKVCNLEATDLYCDNKAAIHIAANPVFHERTKHIEIDCHLVR
DKVQEGSIVTRHVSSKQQLADIFTKALSSWLLKEHMIKMGAENVYSPSxGG
>Copia-13_BD#LTR/Copia 29-4410 via tfasty with CPSC4B, 1 frameshift and 2 stopcodons. [Brachypodium distachyon]
MANTPPTVQHTGNTRPASRDSVTPPPAAQRRRSQSRGRSRARRGGGEVVVQREVVREMSGVGGGAGLVFPMLKRGEYTTR
ALVMEVNMQAASLWDAIENDGVSRREDKQALAALLRSMPPEMHPMLIGKGSAKKAWEAIRVQHQGTNRVRDTRVRRLRTE
FESIIFKPGERIDDFGMRISNLASMLRSLGDACDNEKVVRKFLSVVPGRFVQIAFSMETMMDPASLTVEEVVGHLRAVEE
RLDGEPGGTNAAGHLLLTEEQWEVRKRRPSGYNTAGNGGGRDRSQGSGARKTDPPPKKSTSPSVGSTDPDRDKCRYCGKK
GHWARECRKKQRDKAAVAAHLTQHEDDEEPVLHMATVVEIVHATAAGPVVPGPVVAASMLTGERIFLNEEHARTVLRRAP
DDVDSAWYLDTGASNHMTGDEAIFAELDRAVSGKVRFGDGSVVNICGRGTVLFVFNGERHHELANVYWIPKLKSNIVSID
QLAELDFPTHVEHGFMTVRDQDKLLIAKVPHTKNRLYIAHLKVVQPVCLAAHTDDEAWRWHSRFVHxSFNSLRKMSRTGM
VRGLPVVDHVEQLCEACIAGKHRRAPFPAAAKFRATTPLELMHGDVCGPISPPTHGGKKYFLLLVDDFSRFMWMNLLKSK
DEAAAVIRRFQAEAEKESRQPLRVLRTDRGGEFTALDFAEWCAERGVQRHLTAPYSPQQNGVVERRNQTIVGATRSMLKV
MSVPAEFWGEAAMTAVFVLNRSLTRSLDGMTPFEGWYGRKPNVHFLRVFGCRAYVKETKPGLKKLDDRSRPMVMIGYEHG
SKAYRLYDPAKKKLVVSRDVIFDEGASWDWGEHGGGASTFTVENWTMPMPTSSVPAVSSSPAPTPPSRATSITDGPSSPV
KPMTASKAQPIRFVSPPAEQDEDNLDAGVDPAGIHRYRRVLDLVDSDAGNPGPTECLFLTPTGEPSTLAEAQGNEDWRLA
MVDELASIEENSTxSLADLPTGHKPIGLKWIYKLKKDADGNILKHKARLVAKGYVQRPGIDFDEVFAPVARLDSVRLLLA
VAAQFQWQVHHMDVKTAFLNGELGRVLNGELGEEVYVSQPPGSIDGKNNRKVLRLHKALYGLRQAPRAWNIKLDAVVVSL
GFERSASEHAVYTRGKDKSRLLLGVYVDDLIITGACTTAISDFKKQMCDRFKMSDLGLLTLYLGIEVSQKPGYITLKQSA
FAAKLLEKVGMAECNEAHVPMELRLKLSKQSPNPPVDITLYRSIVGSLRYLMHTRPDISFAVGMVSPFMEAPTTEHMSAV
KHLLRYVAGTIDNGCSYTSTTGDAHLVGYSDADMAGDVDDRKSTSGTLFFYGNCPISWQCQKQKVVSLSSCESEYIAAAT
AACQGVWLGRLLGDLLGSDPLVAKLLVDNKSAIQLCKNPVFHDKSKHIGVRYHFIRSCIDKGTVSVEYIGTIDQLADIFT
KALGRVRFQLLREKIKVVKVQ
>Copia-12_SI#LTR/Copia 79-4266  [Solenopsis invicta]
MEINIDEDARYRVPLFDGTNYSNWKFRLEVLLDEKDLLRYVETPLQEILAQFQIAAGDTSEVRAQKEKSREAAQKSAKRC
RGLIIQKIAESHLEYIKDKTSAYDTWETLKQIFERKSVANQIRLKRKLLCMKFNPTQENLENHILKFDRIVKDLKSSGST
MEENDIICHLLLTMPSEYDAVETAIETVSQDQLTLSFVKGRLFDEEAKRGTRKPKPKNEFQPNSVFVAQTKTRNSEYQQG
NFKGQKGNAGSKSFTFTCHNCGLAGHKRSQCKKPQQPYKNFNTSTQAHVTQDNDNQPKEKSSSKAAFTFLSCENSQEIEK
ISKERWYLDSGASEHLSSQESKMYNIRNLEVPVKIKVAKSGSYLIAKKRGDLKASFCVNGQYNDIIISNILIVPDLETNL
ISVRKLEIKGFKIIFENGMGKIFYKGNIAAIAYRKQKLYELEFSNTAEEKALNSEVANNIELWHKRLAHLSYDGIKKLKT
LVDGIQVEKVNSGPCKICMEGKQAKLPHKGLRNKTTRPLELVHSDVMGPISPTSYDNMRYIVSFIDDFTHFTVIYLMETK
DEVFKYFKMYQAMATAHFNLKISRFRCDNGREYISRKLKEEFESKGIQFEYTIRYTPENNGVAERMNRNIMEKARCLLLE
SGLQKIFWSEAVMNAVYIINRCPTAALENSVPAEKWYGKRQNAQKIKLFGSLVYLHVPKEVRRGKLDSRSERCLMLGYCS
NGYRLWNLKENKLTTGRDVVFDEEKTAKTLFKKQDFYQGTNIDDNEEKDTQEDAQEELPVEEKTTSEDYEENSNTGINSE
MEYNMKEKQGISGKNQSPTLSKNKIESSDVHDSEELGRGRRQKWAPKRLEDFVTNLWPSWNNEEEEDYMAYALSAEEFVD
NVPQCYKEIEEREDKEDWKQAVHEELTSLIENGTWSLTPLPAGKKAIDSKWVFKVKRDEDGNPLRYKARLVIKGCAQKKG
LDYKETYAPVAKISTVRILLSIINYKDFIAHQMDVKNAFLQGNVHEDIYMKPPDGFDIKDKSVVCKLNRPLYGLKQAPRE
WNFRFDSFVKELEFKQSKNDECLYIYRKGTVTMYLLLYVDDFIITSNNLEFLRIVKEKLMKEFKMTDLGELKFFLGIKIE
RKTQGMYLSQRQYIINLLSKFNMSNCKPVKTPIEEGFPGEDVLKEKLITDKPFKELIGCLMYLMNTSRPDLSLSVNKLSR
FQRCPTESLWKGVKRILRYLQSTVDLALLYPKNSKLKEQLVGFADADWAGDTFDRKSTSGFMVKLFGATVTWTTRKQNTV
ALSSTEAELVSLCELICDLLWIVRILLDLDLVIDFPITLFEDNQSCIRAALSNNFNKRLKHVDVKYHFICDLIKKKEIFE
VKYLSTNAQTADILTKPLGGTKFCIFRESLGLSLID
>Copia-13_Mad#LTR/Copia 208-4635 [Malus x domestica]
MVTATQLQILQSPITSLISSVSSSVSVKLDDSNYLTWHFQMELLLDGHGIMGFVDGTNLCPSNLSDSTESSSDLHTSDAF
KIWKMHDRALMQLITATLSPSAISCAIDSTSARDLWVRLKEQFSIVTRATIFQMKSELQNIKKGTDSISLYLQRIKEARD
YLAAAGVMFADDDIVILTLNGLSSEYNTLRSIIRGRENVISMKDLRSQLLAEEAMLANVSVTPFLSAMVASNMSVSSKSS
QFEANSPHDNYSNTGPSSNGGSYGSQGSFYQYNGSGSKPPYHRNKGKGKYQYNSRFGNAKSGSFHNNAPGILGSSPPTAQ
GFFQSSCQICGKFGHLAVTCRFRNTENSITEACQICGKKNHSAHFCHFRNANLQSQQVSAMHVAGPSSVPSANSQQVWLT
DSGATSHMTADLNQLSLASPFPSNETIQTAGGGAGLSISHIGSSTLHTPFKPLHLNSVLYVPQLYQNLLSVHKLCLDNNC
WLIYDAFCFWIQDKATGRIIFMGHCSNGLYPIPLPVSYRSSLPNVHAAFLGQHVSSSLWHSRLGHPSNSIVSAILRKCNV
SDISDSKSVMCHSCLEGKFCKLPFVDSVSQSLHPFDTVHSDVWGPSPCNSVEGFRYYVTFIDECTRHCWIFPLINKSDVC
STFIAFYNFVFNHFAISVKTLQSDGGGEYISKSFQQFLASKGIKHQLSCPYTPEQNGLAERKHRHIVDTAITLLQTASLP
PKFWSFACQVAVYLINRMPTPVLHNKSPFELLFKDVPAINHLRVFGCSCFPLLKPYNSNKLQPKTTKCVFLGYASRYKGY
LCYEVRHXKMYISRHVIFDEGEFPYAMLSSKTLXSSXFTPLLSPSISLPSVTHDNXVVSIASTSXSPTLESIXTPTHAES
ITAPSIQXVLXSSPVAAVLSXGSNPHDHTEXSSEFQPESLQVXSSIPPMNTHAMQTRSKNGIFKPKAFLXKIXADIPIDL
TQVEPSTYKSALSSSVWCAAMKEELSALHSQGTWSLVPLPSNKNLVGCKWVFKIKRDADGNISRYKARXVAKGFNQEEGL
DYGETFSPVVKPTTVRLVLALAAQFGWSLRQLDVKNAFLHGILQEEVYMSQPPGFVDSQQSSXVCRLHKSLYGLKQAPRA
WNERFTNFLPSLGFLTTFSDSSLFVKHVGXSVVILLLYVDDIIITGSATAAITDVIQALAQEFDIKDLGLLHYFLGIQIT
YHSTGLFLSQAKYITDLLHKTDMSLSKPCHTPCLPXTRXLKDDGTPFHNPALYRSVVGALQYLTFTRPDIAFSVHQVCQF
MHCPMESHFLAVKRILRYLKGTMDYGVXFSXGDLCLHAFSDADWAGDPNDXRSTTGLVVYLGSSPISWSXKKQNTXSKSS
TEAEYRALSSTTAEIDWIKQLLQFLRIDVSCPVTLFCDNXSAIALAYNPVMHQRTKHIEVDIHFVRERVAKKLLQLQFVS
SNEQFADILTKGLSTPLFQTHCSNLRLSKPPPVIEG
>Copia-15_MLP#LTR/Copia 24-4528 via tfasty with Copia-2_PPa, 58.8% SW:1373, 1 frameshift and 4 stopcodons. [Melampsora larici-populina]
MSPALLRLATAIIIFISLNFIKKSIEHKQIQKPTHTSNFVMSSDTKIHIVKLNNDNYTEWKGDITGYLMSHGLQEFLVPN
HTPVAQAIAGEEKINFEAYVTRQNKAAGIMYSYLTEPFRIQIESEGLLSNPVGIWKHLKEKFQSTSADSQGRACRNFLxI
PFVTLAQYIKDVRKGMSLMEACGCATTNPILEPLLCEGIIFKLPDSMETVVSLITAKQSESGKLSCKTVLTMLDAHLVDF
TEQHREDSSIALMTTTTAAPAxYSYPxCTNGKHNPAVTNHLPDACWVERPHLRQPPRQPNSRSQTSRTRATTAILQRLYL
DDVIETSALSCLSKSPGAAILLDSACSDHMVSDQKLFKNYESMASEVCLADGNSIHIAGKGAIVITSFGTKLVLVAYHVP
ELGNSLISMGCLLEDGYNLSHDKGVILMTKEGTGCLTGQVRNRVIELSIAIGTSYSATCNSVTLSDYTTLHRQSGHTNPV
RLNVMYGVRSPDDWFCEECAISKGHRLSYSNSLPKATFPLEVVHSDLSGKISSVSEGGCHYYFKLTDAYTNYKYVYIMKS
KDETFSYFMKFKAEVETFHNRKIVSLVNDGGGEYMSKVFLKMLSENGTTSYISAPYTPQQNPVAERGNRTMTEKARTLLK
HSNLPQSFWGEAVATAVFLENVTPMTKIDNQMPYKLWFNRPFDVNCLKPFGCRAYVLIPKKFRRKFDDTSFKGILLGYQL
GMKNYRVRLENGKTVYSHDVTFNVNSFPGVGNNEEQGEGFVEVFNDNIVTSSSESEAPLLNLPSSGVLESATSPVLPFEP
VIPPMPSSRMIEPALPPTDQLVHVPSGVPMQVEVVPDLPVPPIIPMELDSPPSTPPGQLVIRPSQQNLQIQLSPVNPVVL
QKRPGWEWQPLSIPAPQDISSAIEESNILEPGVKRHRANLAQRQRAHTARKLRAKAIRLQVKNYEDEHKLIDSSMILRTA
FTPGFHLTQRAMKTTAVAGVSIDPKTYLQALKSDNQFDWKKAIDNELENMERRKVWEVCDLPAGKNAVGTTWVFKKKMGG
DGELIKFKAQLCAQGFSQEYGEDYNETFAPTGRIATLRAINAMAALENLDVYQMDAVAAFLNGSPKETIYMKIPKGLTVN
GATLTSVLKLKQALYGLKQAPKVWYDCLRAFFISIQLIPSTSDPSLFISKDPTWKCIVHVHVDDLTIATDDFQRFRSLIT
QKFQMDEDVEYKYILGMKVTQNxEERTITLTQSQYIQNLLEEYNMADCKSVGCPMIPGSYLLPGSDDEVREFKDLDENYR
HGVGKLMYLNNATRPDISFVVSQLSQHLNNPSILHWQAFKRVLRYSKGTKTVGIVLGGKDLELKGYADADFSSCPYIRRS
TGGYCTMVGDSTVNWKSKKQENVATSTTEAEYRSAYEGGQDLVWFRHLLNNLSIKQHSAPVLNLDNQGAIALTKNEQFKS
RTKHVDVKYHWLRELVADDQMKVEYVLTENMLADIFTKALTPIKHQRFCSLLGLQDVAKTGG
>Copia-15_CP#LTR/Copia 682-4819 via tfasty with Copia39-PTR, 71.6% SW:3936, 1 frameshift and 2 stopcodons. [Carica papaya]
KNExxQVFVSEIVPAMSKITEHKLNGTNYLEWSKTIRVYLRSIDKDDHLTQDPPTDGTRQIWLRDDARLFLQIRNSIDSE
VIGLINHCEFVKELMDYLEFLYSGKGNVSRMYDVCKAFYRAEKEVKSLTAYFMEFKKTYEELNVLLSFSADIKVQQTQRE
QMAIMSFLAGLPSEFETAKSQILSGSEITSLQEVFSRVLRTETTTPNQHTNVLVARGGGRNNNRGGNRAMDSRYNDSSNI
VCYYCHEQGHTKRQCKKLQNRNQRTQTANIATAATASSSSEKTIMVSADEYARFSQFQESLKECTPATTSAESGKRCLIS
SSNKWVIDSGATDHMTGNPNIFSSFRSHRAPSPVTIADGSTYNIEGSGTIKPTPAITLTSVLSLPKLAFNLISVSRLTKD
LNCCISFFPDHCLFQDLMTKQIIGKGHVSEGLYILDSWVPRSVVCSSIVSPFEAHCQLGHPSLTVLKKLCPQFHDISSLD
CESCQFAKHHRNSSSPRINKRAESAFELVHSDIWGPCPVMSKTGFKYFVTFVDDFSRMTWIYFMKNRSEVFAHFCAFHAE
IKTQFNVSVHVLRSDNAKEYMSDSFQNYMTQHGILHQSSCVDTPSQNGVAERKNRHLLETARALLFQTQVPKQFWADVVS
TACFLINRLPSAVLECDIPYSILFPNKSLFPVQPRIFGSTCYVRDVRPNITKLDPKALKCVFLGYSRLQKGYRCYSSDLN
KYLVSTDVVFSENIPFFSSQSSSTDQVKDDEWLIYRFQNSTSTEQPDNGISSYVPSEQTDDGVPPTQEQPPIIHVYSRRQ
QTNDTCPAPASSSSDPSTHDLDLPISLRKGTRQCTIPHSTYPIANFISYDHLSPSSNSLIASIDSTSIPKTVKEALNHPG
WRNVMLEEINALDDNHTWDLVDLPKGKKVVGCKWVFAVKVNPDGSVARLKARLVAKGYAQTYGVDYSDTFSPVAKLTSVR
LFISIAASRDWPLHQLDIKNAFLHGDLLEEVYMKQPPGFVAQGEYGKVCHLKKSLYGLKQSPRAWFDKFSEVVCEFGLKK
SKCDHSVFYRQSTAGIILFIVYVDDIVITGDDHAGISSLKSFLHTKFNTKDLGQLNYFLGVEVTRSKEGILLSQRKYVLD
LLAETGKLGAKPCNTPMVPNVHLTKDDGDPLDDPEKYRRLVGKLNYLTVTRPDIAYPVSIASQFMSAPTVKHWEVLEQIL
CYLKGAPGLGIMFRNHGHTHIECFTDADWAGSKIDRRSTTGYCVFVGGNLVSWKSKKQTVVSRSSAESEYRVMTQSTCEV
LWIHHLLDEVGLNPTSPAKLWCDNQAALHIASNPVYHERTKHIEIDCHFIREKIQENFISTGYVKTGEQLGDIFTKPLNG
TRIEYLRNKLGMINIYASA
>Copia-18_GM#LTR/Copia 99-4100 via tfasty with Copia-91_GM, 81.9% SW:3790, 2 frameshifts. [Glycine max]
SGSIPANLPVLTGKNYKNWKIQIKVVMRFQGIWEFVEEDYIPVGERATDEQKAAHREKEKKDCKALFILHQSVDAANFEK
IAMAQTSKEAWDILQKSHDGATKTKKIKLQTLRRQYELLQMEKNESVAEYITKVQTVVNSMKGYGEKITVQSVVEKVLRT
MPPKFDHIVVAIEESKNLEELSLEELQGSLESHEQRMNERINEKKSEQALQARSNPKKHGDRWKKEKTEAKSNKWRGNQN
SDKDHKKGGGSNSQNSSNRKKFDKRSIQCFNCQKFGHFADECYSKPNNKREPKGDDAKLAQEEDDDTEQVLLMVTTQIEG
TSDNCWYLDTGCSTHMTGRREWFLNLDQSVKSQVKFADDRILTAEGIGKVLIKTKDEGQSCITDVLFVPGMKSNLLSLGQ
LLEKGFMTKLENKMLRVFDRNHKLILKSPLSKNRTFKIEIDVIEQKCFTTTVNSEEWLWHYRFGHLNFRDLIKLNSREMV
LGLPQIKPPSEVCDGCLQCKQSRSTFKQNVPIRAKEKLEVIYSDVCGPMQTESLGGNKYFISFIDELTRKVWVYLIRRKS
DVFEVFEKFKNMAEKQSGSLIKILRTDGGGEYVSAEFQEFCDQEGIIHEVTPPDTPQHNGVAERKNRTIMNMVRSMLKGK
SLPKYLWGEAVSTAVFILNRSPSKRLEGITPEEAWSGAKPNVSHFRIFGSLCFRHIPDQLRRKLDDKGEQMILLGYHSTG
GYKLFDPKSKQIIISRDVVFDESRSWDWEQNIEMKGPSIMIRSEEEETSEGNGNTTQREVRPQRNAPKPTRFQGFEMLSD
ADVSADGNLVYFALFSEAEPINFEDAMTDQRWVEAMTEELKSIEKNQVWELVSQPKSKKPIDVKWIYKIKTNPEGKVVKY
KARLVARGFLQKAGIDYREVFAPVARIETIRTVVAIASLKNWTMHQLDVKCAFLNGPLDEEVYVTQPPGFSIVGQESKVL
RLRKALYGLKQAPRAWNKKIDSFMMKIGFDKCSCEFGVYVRSKSVGNIIIVCLYVDDLLITGGNESEIAELKRELMSEFE
MTDMGVLSYFLGLEFKKTERGILMHQSKYATEILKRFNMVECNSAATPTEAGLVLEKEGKEDKVDATEFKQIVGSLRYLC
HSRPDLEFAVGLVSRYTKGPKIPHLLAAKRILRFIKGTINAGILFPNKDNSNSEELMGYTDADWGGDRDDKKSTTGYIFM
YGAAPISWCSKKQSIVALSTCEAEYVAAAMSACQAVWLDTLLQELKIKESDGVKLFVDNKSAISLSKNPTSHGRSKHIET
RFHYLRDQVNKEKLKVEYCCTFDQLADILTKPLKRERFKMLRERIGLMNLGDQN
>Copia-26_DPu#LTR/Copia 565-4475 via tfasty with Copia-19_DPu, 1 frameshift. [Daphnia pulex]
MWTRLTQQYEQNAAENLFVLIDRYYQYTFNENDNMMTHLAKIEGMVGQLRDLGSPIDDNQVVSKVLMTLPPKYANFRESW
GLLATADKTKANLIAKLLLSESMLEHRQNQENVQSQERDIALIASRNAGPSRMKCSICGMNNHNHLDCRNRNKREFFKPH
GPQQPKKPRVKCTYCHYQKHVYEDCRTRKRHEQEASTSQKQEQNNSVAHLASKQKEESDSEMFNLEHAFVSFSLGKLQAD
DWFADSASTEHMTEHRHYFTSFEPISHKWNVKGVGRDNQPLEVKGKGDIKIKITVGTNVHYGILQNVLYVPGIGVNLFSI
GKATDRGITAISEKDSVRMYRGTNLELIGTRSEKDLYQLNLLAVSPESSATSSSYQTVAGTNSLVFPAVSLNVWHKRFGY
AHHAVIKKMEAKNSVIGLSLSNDPIDPEPCKGCALGKSHRQPFPTSGSRRATKVGEIGHSDLCGPMNVTSTTGSLYYVLF
QDDASGFRVIYFLKTKSETFNYFKIYVARMLTETGHRISIFRSDNGGEFLDGDFQLYLSTNGIRHETCAPYTPEQNGVSE
RSNRTLMESAMSSLFDMDLPRDLWAEAANTSVYVNNRVHGRSTNSTPFEIWYCRKPDVSYFRIFGSFAYVHVPKQLRRKL
DAKSQKLLFVGYSETQKAYRFFDRSSRRIIVSRDAIFCETPTTVPTVSENVAKPDQPIHLHVPVPSVNVVNSDGQIHLPQ
STQTEPTSDCATESNSPFDPYDTVKNFHGFEAVLRRSLRIRTPKVIPSFLAKPNFPLLNDPDNLFTYNDAISGSNSKEWV
TAMVTEIDALNRLKTWSLVPRPSDRRIVKCRWVYAVKRSITGLVEKFRARLVAKGFSQKAGIDFDETFSPVVKYDSLRII
LSIAAAQNLDLFQFDVSSAFLYGELTEEIYLEQPEGFCVSGREGDVYRLHKSLYGLKQAGRVWNAKFDGLVTTFGLIPSA
VDPCVYRYQKDNVYLILCLWVDDGLLVCNTAQLVSDFFSYLQTHFEMKPKKVDRFVGLHISRDHANQKFFVSQPSYTRKS
MSAFNMTNCDSVSTPADPNSRLSVSKLPLDSLVKFPYRNAVGALIHLCVTRPDLNYAVGQVAKYSSNPDQSHINAVKRIF
AYVKGTADYGICFGSKKDDCLIAFCDADYAGDIDTRRSTTGYVVMLNGGPVTWGGRQQQCVSLSTTEAEYVAACETTRQI
AWLRNLLQDVGIVQKAPTPLFCDNQGAIHLSKNPENHKRTKHFDVQYHYVRKSQAEGVISTQYVSTTKQSADMFTKALSR
PIFEMSRDSISVCSIPGLIPTTEF
>Copia-25_GM#LTR/Copia 47-4037 via tfasty with Copia-91_GM, 77.7% SW:3534, 3 frameshifts and 1 stopcodon. [Glycine max]
MASNSHFPSNLPILTGKNFNRWSVQMKALLGFQDLIDVIENGIEIPKEGASDSQKTEFKDLKKKDCKALVILHQCVDDSH
FEKIANAKSAKEAWDILNKAYAGADKIKKVRLQTLRRQFELLQMEETESIGDYFGRLQVLANSITSCGDTITNLTLVEKV
LRTLNPRFDHIVVAIEESKDLESLSVDELQGSLEAHEQRLQERLQERANDKATEQALQAHHQSRNGGSDNRRGKKGRGRF
QNTRGRGGYSKDKGKPQPDQRSGDNCSKRSGGSSTRGRGGKKKWDKRNVECFNCGKKGHYAEECWYREKNVVDDAQLATG
AVSDTELVLLMVTTKTGADAEDQWYLDTGCSTHMTGHKDWFVSLDESVNHKVRFADDNTIRVEGHGKVVIKRKDGIVSYI
EDVLYVPNMRCNLLSLGQLLEKKYRMVMEDKEMKIYDKDRRLIIKAPLNRNRTFKVGIQVMKLNCLQAETCREEWLWHYR
FRHLNFKDLSQLHRMAQGIPQLRxMTENCRECLECKQPRNAFQKFVPIKSTQKLEVIYLDVCGPLQVESLRGNRYFVTFI
DDLTRMTWIYIIKKKNEVLRIFKKYKASVEKCSGHCIKTLRTNGGGEYTSKEFAEFCDEAGITHEFTPPYTPQHNGAAER
RNRTILNMVRSMLKTKKLPHFLWSEAAATAVYILNKYPTKRLKGVTPEVVPEQLRQKLDDKGEQMILIGYHATGGYKLLD
PRSKQVSVSRDVIFDELKEYEWKKDPPPQYSQIMPPSFIPEELSDTTDELPTRNTEGGTMRSQRVMQPSQMLKDYEVMKD
SQITYEGDIVHFALYADDEPMSFEEALKNDKWVNAMKEELKLIETNHTWQLMELPKLKRPIAVKWVFKVKRNPAGEVVKH
KARLVAKGFLQKKGVDYGEIFAPVARIETVRLVVAIASMKGWSMYQLDVKSAFLNGPLEEEVLVKQTPGFEVVGHEGKVY
KLKKALYGLKQAPRAWNKKIDSVLIQIGFSKCISEHGVYVKGEYESDLVILCLYVDDLLITGNNKIEIDKIKQLLKNQFE
MTDLGSLSYFLGIEFKETEAGIVMHQSKYATDLLKKFRMTNCNATATPTETGLALSLRDEGEPVDETQYRQIVGSLRYLC
NTRPDLAFSVGLISRFMQAPKTPHMMAAKRILRYIRGTINYGILLPNTITNSNMELVGYTDSDWRRDNDDRKSTAGYIFL
LGDALVSWSSKKQDPVALSTYEVEYIAASMCSCQGLWLRKLLKEMKIQKTEAINILVDNKSAISFAKNPIDHGGSKHIET
RYHFIRDKVSKGKVKLLYCKLEDNLADLLTKPLKKNKFEDLRNKMMIMIE
>Copia-26_Mad#LTR/Copia 232-5216 via tfasty with Copia-75_Mad, 1 frameshift and 8 stopcodons. [Malus x domestica]
MLSILLHLITAYICSAQCEFHFSALRFGGFVFCLLERVGVLLILVVVVASGFYCSCIAITGCCNLSFVSNMVTHMQLALT
QSPISSLIPSVGNTVTVKLDDSNYVTWNFQMQLLLEGNGIVGFVNGSIPCPAQFDDSDFNDETVENNHHVSDAYQVWKIH
DKALMTLISATLSFSALSCIIGCQSSNEMWMNLREHFSSVTRTSIVQLKIDLQNIKKxPESVDVYLQRIKESRDxLAAAG
VAISDEDIVIVALxSLPSEYNTIKAVIRGRENLVSLKELRSQLKAEESTLDEATKQIPLMSAMYTQASGSPFDHGEPLGT
KSVPPMVQGFSGYPNFMSPFMPVSNTSLQGFPGFQQLPLPPMTNVPMAFVTQQSSGSYNNFRGNNFRGNNYKGKGQGKKF
HGHNSGGxYNGGHNSGGQYNGLGGxYNGSGGYAQPQYYNVSQSFQHNATPQSISSTYNPNQICQICDRKGHSALNCFQHG
CQICHRVGHVAAICFNRNNTSSGFSSHFSPGVPSSLPTPxHNGHYGQVPMWNPFCPPQPMVSPNHGSQFPPSAMPQSHAP
LAVHTGLGSSSSAPQQDFWLLDSGATNHMTSDVSNLHMATSYPSNDTVTSASGKGLLIKHIGPSFLPTKSHNFKLPFVLH
VLKLSQHLLSMNQLCKDNKCRCIVDDVSFCIQDKVTRRMIFQGLSNNVVYPIPMFKPQRSLSHGSTPVAYMGQKQISSLL
xHYRLGHPTQSIVTAALSKSHIPFACNAQSQMCKACLQGKFTKLPFPVIASKSITPFEVIHTDVWGPSPSMSLEGYKYYV
SLIDECTRYTWIFPLTNKAAVFSVFVHFFAFISNQFAAHVKILQSDGGREYISTQFQSFLLSKGIVHHKSCPYTPKQNGL
VERKNRHIVETAITLLQQAFLPSKFWFHACATAIFLINRMPTPVLHMKSPFELLYTLPPKLEYLRIFGCLCYPSLKSYRV
HKLAPKTNACIFLGYASxHKGYICFSLTDQKLLVSRHVVFDESSFPSFSDDVSVPPKVVSEHPSLPIPVIHPNTFTHSPS
LLTTCSFLGSPHSSSVSSRPQHVTQSTASQHNISGDLVPSFTPAEDASPVLSSMSSNEHPNITVSQVEDLQQVCLPAQNC
HPMQTKSKSRIVKKKVFSAHIGQASDIKEPQSFSSAVKCVQGQTAMKEEMDALTQQQTWKLVPLPPGKNLVGCKWIYKVK
KNSDGSVARYKARLVAKGYSQEAGIDYYETFSPVVKPTTVRLILSLAASYNWKLKQLDVKNAFLHGFLEEEVYMSQPQGF
VDSTCLDYVCKLERSLYGLKQAPRAWNDRFSGYLLKLGFKASYVDPSLFVKCDESSIIVLLVYVDDIILNESDVVKVQHV
ITQLIREFEMTDMGLLHFFLGQQIEYQSQGIFVHQSKYVKELLQKMNMLDCKPCSTPCHPNQKLLNHGSEPVSDPSTYRS
IVGALQYLTFTRPDISFSVNQVCQFMHSPLATHFTAVKRILRYLKGTMIVGLSFKSGSSLLNAYTDADWAGDPNDRRLTT
RFVIFLGDTPISWSFKKQHTVSRSSTKVEYRAMATTTAEVIWIQQLLRDLRVACSSAPVLHYDNISAMALATNPVLHSRA
KHIEIDCNFVRERVQQGTIVLQFVASTDQYADMFTKGLCSPQFTRNCSNLMLGSMPHELKGG
>Copia-27_PIT#LTR/Copia 19-5013 via tfasty with Copia-77_BRa, 51.2% SW:1010, 2 stopcodons. [Phytophthora infestans]
MTKPLKYSSEGVPKNWDGKDWQSYKWALMNVFKEQDLKNIVVGDLTLAMLATASAEKQEEFKKKQLKIMRLIGTSVPADV
LHQLRDKETGSEMWSELCSLYEGKQNEAIKAYTIRRVENELWSMKLAPGGDANLHLCKMFNLKTVLADLNHTVADTTMVD
MLLESLPDQLEFEHLKSSIYYGADPSVYTPKKVRELILAAKARQKEFRAKRTEKKGSPRGRHGKGSESRKGFHEDKTGDP
KRVRRCFTCGSEDHLRVDCPEKSKGKEKADDAEKKRKPRSCCTLRQETTGPVQMNREWDEGVVAGVTISREIYGIPRELD
EAHGVDDVHTDDVRGIGIVSDDDAASDGNPVNDHESDSGESHLEDNDQVTQGLNGGWWYLDTASNSHVTGNFAEFVSYTA
DSEQLQQIRGVTSTIASRVAGMGTVAFTTEVNGEQVVSYLDGVLYIPDAEYGLFSPGLAYEQGYTLEYDRESRNFHVMRN
GRTVAVATQQEATWGFQVASPTQRTRVLPEAAARCNHTMAEGVGSLQLWHERLCHICPQYLKTMVDKELVEGMMVTQRQQ
DTCDACHLGKQKMKSHRKMLDRGLKRPNQIVYADLLIPGKNNATQYEAVLVIMDGYSRFVTAHLLRNKDSKVVNKYMQEY
VLWAERQAGRNANGKTYRVQQIWSDKGGEFFNEEIDAWYRSRGIEHVKVGPKSSQLNLCERTHQSLEDMTRSTMAHSGLP
KSLWPEALRNAVYVKNRVYNKGTNGIPYEMLFRVKPNVHHIRKFGALAYVHVPVTPGRKKLSVHAKIGFVLGYAENVVGC
KVYFPDEHTAKFVSDLRVAEDVMYRDRYTTEVEDDDLSSLHFTLQDEDQTVLSELSNVPSFELEEGESVDACVDAVQTQE
GERTDVHTQVGREMHQVYDQPVHHADSEADGDIHLNGDVQLKVTEDGIETVQVGSDAVESDEHGDVVTESVQHEGSQPSE
VSKGVSVDTGQAAEGENVHEAAEGVDIADADAISVAGTCGSEVVDHKLDESEEQDGNEETTVASVFAEDQSSSDAELESD
TGEDTLPEAESDRDVVGISPEVTVTGKRMHRDETPSEEARAELDADKTNVKKTRTGLREVHERRRPAYLDDYMVNVTMNS
SRVLDKNGRPIRASEIKVPRNRREMIRSKWCDFFMMAEMEELAALKKKGVIAEIPADEMPEEASPVNTMWVYDIKTDHQG
YVIRFKSRIVALGNYQRPGIDFKETFASVARMSSFRLLLALAAQLGLMVYGGDINTAYLNAQLEIQQYLRSIEGYPCKIN
GYVYIVLKALYGLHQSGREWNSELNNWLMKHGYMRSLTEPCLYYRFDGDTIMYVLVYVDDILVATNDEQSKKDLFAQLDK
EYGIKDQGLLNEYLGVKVEQTTERITIHQGKYAREILSKFGYQNAHAVGNPMEVNLRLAPMSDEETGDTSFPYRESIGML
MYLATSTRPDLAFAVGQLSRFVGKPSAKHVGSLKRVLRYVAGTLDYGITYTRTQGATREVVLEGYCDSDWANDPEQRKST
TGFVFMLSGGAIAWMSRRQSIIALSTAEAEYVAACEATMEAVAEGNILQEILPDHEVKLRIGVDNQAAHVMATNPTYSRR
TRHIELRWHYVREQVVKGTIDLHKVKGEANPADTFTKPLNKIRLKAMLELAGVNxAKxSKLHFEG
>Copia-26_SB#LTR/Copia 37-4428  [Sorghum bicolor]
MASASSSFGVSAAISLTTFLPPVTEKLTRANHQSWKAQVVSALRGAQLADWLEATATPPEKFLAAEAPADGKEAEPPKAN
PDFAPWVAKDQMVLSYLLTNLSKEILGHVNTEVTAKGAWAKIEGMFASQSRAKIIMTRMALANATKGTSTISEYFAKIKS
LADDMAAAGRRLEDEEVVSYLLNGLDAHYDSVFTAVANRAEPISVGELFTQLVSHEQRLELRNGGGNMSSANMVAKGGRT
GNNVHFSNRGCGGRGPGGKNGAGRGNRGGFARGGGNRTSSFEQGVCCQVCGKEGHPAYRCFKRFDRNVTGPPQKSASTAT
TSSYGVDTNWYMDTGATDHITSELEKLTTRDKYHGGDQVHTASGSGMEIQHIGHGVLRSPTNNLHLRNILHVPAANKDLL
SVNRIARDNQVFFEFHPDHFCVKKQDTKKILLTGPCKDGLYPVKSSNKEVLGASKLPASLWHHRLGHPAPPIVQRVLNHH
KLPFLQESNKVSVCDACQRGKSHQLPYPRSSSISASVLDLIFSDVWGPAPSSVGRNNYYVSFIDDHSKFIWIYLLRRKSE
VFQCFRDFQMLVERQFDRKIRAIQTDWGGEYQALSSFFTRMGISHHVSCPHAHQQNGSAERKHRHIVEVGLTLLAHASMP
LKFWDEAFLTAVYLINRLPSKVISHDTPYFRLFGEQPDYNFLRSFGCACWPNMRPYNPRKLAFRSIKCVFLGYSNKHKGY
KCLDVSSGRVYISRDVIFDEHTFPFAKLHPNAGAQLRAEIALLPDTLRGDLYTLDQSTVSPFSTNPSLSSSGDLMTTGEN
AVEDDQVMASEEPHFMCRVVGDSTASHDDPPTAAGQDAGGSSPGSAHLPPPSSDSTRVDDLAGSSTLGSAPHASGLHQPA
PHPDPSAGRTDSAPAPASAEISSPGSSVVGAPASHPVAPQLPRPVTRLQHGIRKPKTYTDGTVRWGMLARTSTEEPATLD
AAFNDKNWHAAMNSEYEALLKNKTWHLVPRPRGKNIIGCKWVYKLKRKADGSIDRHKARLVAKGFKQRYGLDYEDTFSPV
VKAATIRLILSVAVSKGWTLRQLDVQNAFLHGILEEEVYMDQPPGYADKVHPEYVYKLDKAFYGLKQAPRAWYARLCKRL
QSLGFVPSKADTSLFYYNRDSLCIFVLVYVDDIIVASSSQEATGALLKDLQKDFALKDLGDLHFFLGIEVKRSSEGLKLT
QERYAIDVLLRSGMDKAKPVDTPLSTSEKLSISVGEKLGPEDSTRFRSLVGALQYLTLTRPDISYAVNKVCQFLHAPTTA
HWSAVKRILRYVRGTIKFGLSIKRSSSMLVSAFSDADWAGDVDDRRSTGGFAVFLGNNLVSWTARKQATVSRSSTEAEYK
ALANATAEVMWVQKLLAELCIPHPPKARLWCDNLGAKYLSANPVFHARTKHIEIDFHFVRERVSQKLLDIRFINSGDQVA
DGFTKAISAAQLRKFRNNLNLTSG
>Copia-25_CQ#LTR/Copia 22-4042  [Culex quinquefasciatus]
MTSEKSDYPIFDGKDFADWKFRLELTLAERELLDHVRKEPKVEQLLLDNWVKVDVKAKNVIVKSLGREHSHIVRSEKSAH
GMLKALSEVFEKSGAVQERHLRMKLNKMKCEEGQPLDVHFAAFDSVVMDLRAAGAAMTETEQVTHLLMSLPRSYEHIVTV
LLAMEELTLRKAKARLLNEEVRRSEMNEEEPTGRAAFLGAPKKFTGKCWRCNEPGHRAFECPKASGEEARNTEKRRPGPQ
KRAFNLSKREDDRGQEEDTSRAFAFVAARGTESLGSSGHAPREVLWIIDSGCTDHMTNDDKLFLVERRLSAVYPVSLAEK
GQAIEATKIGFIASTSVVNGREYDCHISDVLFAPGLRHNLLSVSRLEKAGFVAVFREGGVELWAGDVLFAEGQRRNDLYE
LKFTVKERQSNVAAAVDTNALWHRRLGHIGMRSINHMVKKGMVTGIKPNITDTLGVCEPCVMGKHSRATFHRCERRASRP
LELVHTDVCGPITPTTWDGKRYFVTFIDDYTHFTIAYLISTKDEVYECLKEYYSMVCAGFGSSVARMRCDNGGEYISRRC
KEFCKEKGVVLEYTAAYTPEQNGRAERMNRTLVEKARSLIYESQLPKEMWGEAIMTALYLTNRSCTVALDDLTPTELWYG
KKPDVSNLRVFGCRAYAHLPKCKRRKMDAKSEKLIMVGYSGNGYRLWNPEERKVKLSRDVIFDEAVLPGKEREPDQDPVS
KQIVGEPVPEENAVEHEMTDDEEAATSDDEPEGASEAGAPESVEREAAAREADTREAHTRGADVQEADAREAEASEAGRR
KSERNKKRPVWHKDYQMDSTALLTNGIEDVPESYNSIEGRRDAADWYAAVRDELNSLTENQTWDVVDLPRGAKVITSKWV
FKKKVDKNGDLERLKARLVARGFQQTAGVDYHDTFAPVAKLSTVRFLLAVGIQRSFEFWHMDVTTAFLYGELDETIFMKP
PPGLDVEAGKVCELKRSLYGLKQSPKCWNNRLHSFLSSLNFERSDADYCLYVRIAHTERLYILLYVDDLLICGNNSSEIA
VLKQQLSAEFRMKDLGQLEYFMGMRIRIDDAAGMVTIDQTAFAERILERFGMEACNAVATPLEPGVKFDSAESSDEVRTN
FRQLIGSLMYLMLGTRPDLCFAINLFSRYQDKATCEHWNCVKRVLRYIKGTTGMHLMYTRKDEATPLVGYVDSDWANDPD
DRRSTSGYLFEVYGNLISWTTKKQGLVTLSTAEAEYVAASQAVCEAIWFKKLFQDVGYPVDHPIPVYEDNQACIFISKNP
ESKRTKHVEVKYHYVREKVWRKEVELRYISTKEQKADILTKPLARVAFEKMRLELGLERGG
>Copia-21_BG#LTR/Copia 78-4167 via tfasty with Copia-26_BG, 70.0% SW:2573, 1 frameshift and 4 stopcodons. [Blumeria graminis]
MSASSSTTSICIGNVRANLPILTGHSNYRRWYNAWLVVLRGAKYWSVVNDGPGKECRPSAMKNEDSNEKEEDLLRRIEDY
DERNDIAHAALLSGVSEELQEIVGGCALEPESARVAMRRLKAKFDHETTTSTLHLFKNFIQLKMDEGDSVSDHISRFETS
LEHLYNRCSMSSRPEAAALRAFLSVEEVKIMCLFLSFPPSFENVVDNLSTKENLRYADVNNRLLDLSTNKSSTLSSAASS
SKAYFTETAPVKHDKNKSCTWCRKHGDRHEGHYHTECRKLKAHLDSLPEVKRKAKETVPKYEKANAVANTSSPEDSYASN
YTKAFVSSSSQPSLSHWILDSGASAHITSCKEFFSSMSNHTGNVTSAGSVDYPIHGRGTIQLDLQLSSGEVTKATLEDVL
YVPGMTGGNLISESVLDRKGYEIVSKDGTRRVFKNGKEYMFSALNQFNQFVVQGVKYKSSFVSYLEAHECFGYPGQNAML
HLKRKYPSQIPNKPEQFHCPACVLSKSTHEVGNSRIKRAEKLFDIVHSDLSGKFSVESLGRKQYYISFIDDFTRYAWIYF
IHSKDDTYDAIRQFIKRIQNQHGITIKKVFSDNGGEYIDRRVEQFFGNHGIDHEFSPPYEHESNGVAERFNRTIVTKART
MLLDLPKFLWAEAIATAVYLYNRTPHRTIDYQSPIGxxTTHQHxHQxSSGSKLQPRALEGIFVGYTGSSQIFRIYIPSKR
AIQITRQVQFPNTKSGEVLIEVSEPSNLETQIIPPTSSPVVTHEPPTSTTIPNCPFTPVSPHIPGTFVETPRSPQPPVPV
TPPQPESEPVIPGAHRPHLQNFIGERRGTRDRRQADPGPGMVPNSQRYQALAVSIEPTTYHQAMKHDDSDLWRIAIDEEM
NALHRNETWEVVPKPKDRNVVGSKWVFKIKHKADGSVDRYKARLVAKGFSQQPGTDYDDTYAPVARYDSLRLLLALSSHN
EWTPRQMDVKSAFLYGKLDREIYMEIPDGYKESGKCYLLRKSIYGLKQSPLVWYDTLKSVLNKEGFTSTNFDPCVFVDHE
KQTYLAVYVDDILIFGQDPKKLDKLEDILHAKFECTDLGTAHYILGIQVDITEQGISLNQQTYINKVLERFGMSNFHPVG
TPLDPSILLQRGVPEEEIDDSTMYQSIIGSLMYACIGTRPDLAHTVTLLSQFSSCPNQIHLAAAKRVLRYLKGTVTWTLH
YPRKNDSILHGYSDSSYGNFIDDRKSCSGYVFCLGEACISWCSKKQKTIALSTTEAEYMAISDSARHMIWVKEALSDLDQ
LYEAVLHADSNGAIDLSKNQRISQRSKHIDIRYHFIRSHVDSTFKLEYIPSEENLADLLTKSLAKPAHQRLSEIVRCSPE
GKC
>Copia-18_ST#LTR/Copia 55-4067 via tfasty with SHACOP21_MT, 78.4% SW:3440, 1 frameshift and 2 stopcodons. [Solanum tuberosum]
MASNGSSLNISQPAILIFTGQSYQFWSIKMKTLFKSQDLWDLIETGYADPDEEQRLKENRKKDAKALFFLQQAVHETVFS
RIAAATTSRQAWRILQTEFQGSSKVIVVKLQTLRHEFETLMMKGNEPVGMSLKFxSxKEMNMCKVFLSRAMTIISQIRSH
GDQITDQTVVEISLRSLTPKFDHVVAAIEESKDLSKFSFDELMGSLQAHEARINRSAEKQEEKAFQSKVEAPNSRDHEKA
PTGRGRGRGAFRGNSRGRGRGKSFEQRHFNEQRCNRSTKQCHNCKKYGHVQADCWYKEKQANYAETTNEESKLFMACRDT
NEVAGMWFVDSGCSNHMSGMKSIFKELDETLKSTVRLGDNNGLQAEGKGTVAIRNIHGKVKLLHDVQFVPSLAHNLLSVG
QLMANGYSLLFDDGACVIKDKKSGQTMVNVLMAENRMFPLEVSNVENFALVTGVKNDSELWHLRYGHLNFKGLKLLGQKG
MVFGLPEINSFDLCEGCIYGKQSRKSFPVGKAWRASTCLELIHADLCGPMSTESFGGSRYFLLITDDFSRMSWVYFLKYK
SEAFENFRKYKALVENQSGLRIKTLRTDRGGEFLSNEFVHFCEESGIHRELTAPYTPEQNGVAERKNRIVVEMARSLLKG
KGLPNQYWAEAVATSVYLLNLSPTKAVMNQTPYEAWKGTSPSVSHLRIFGCIAYALVNSQTRQKLDEKSQKCIFIGYCLE
SKAYRLYNPLTGKVIISRNVVFDEKSSWNWSEKQIQQEISIPIEDSPDEGQGSDPNSLEEAIEPETLATLEEPSSEPIPL
RRSTRARKENPRYSNQSCQFAFIVADPIFYEEAIEKEEWKNAMKEELMAIQRNETWQLTDLPNGKNVVGLKWIFKTKYHV
DGSVQKHKARLVAKGYSQQQGIDFEETFSPVARFETVRTILALAAQLKWSLYQLDVKSAFLNGELEEEVYVSQPQGFEIS
GQEEKVYHLRKALYGLKQAPRAWYSKINSYFVQNGFERSESEPTLYLRKRGNNDLLVVCLYVDDIIYMGSSHSTVAEFKA
SMMSKFEMTDLGLLHYFLGLEVKQGEGEVFVSQKKYASDLLKRFGLVNCKSAATPMNMNEKLQQEDGTGQANARSFRSLV
GGLIYLAHTRPDISYSVGVVSRFMSNPSKHHFGAAKRILHYVAGTLEYGISYSHVSNFRLLGFTDSDWGGSVDDRKSTSG
NVFSLGSGAITWSSKKQVTTTLSSSEAEYIAATASACQCIWLRRILVDLNQKQEKATEIYCDNKSTISMAKNPAFHGRTK
HIDIRFHFIRELVEKEEIILKFCNTNEQVADIFTKALPYQKHVYFRSLLGVSDFESRG
>Copia-21_Pru#LTR/Copia 173-4518 via tfasty with Copia-10_Mad, 86.0% SW:5454, 1 frameshift and 1 stopcodon. [Prunus persica]
SDPLVLHHSDTPGLTLANAPLKGDNYGQWSRSVRLSLSAKNKLGLIDGSVKAPPSTDAKFPMWQRCNDMVLSWLLHSIHP
DVASSVLYSDTAAAVWNDLKDRFSQSNDSRIYQIRQEIVECRQGQQSVSIYYTKLKALWDELSTYHEPLICDCEGLKKLA
DREEKEKVMQFLMGLNDSYSTVRGSILMMNPIPDTQRVHGLILxHERQMEVASRRENPSYSHAMQTSRAPATTGFFRSYK
PSKCSHCDQEGHSVDHCYYIIGFPLGHKWHGKNVQPRNKKPPAHNDKRAAAHNVELETLPTKGPTASATGGPTFTTEQYN
QLLAMLHNKNDNAQSFANATGTFSPTCNTAHHDSHSTLHWIVDSGATDHISRLTPKHYTHIGTQHDFVGLPNGEHVAIES
IGSVRLTPDLSLDGVLHVPKFRVNLLSVSKLTRALNCMVTFYPDFCVVQDVETKRMIGLGKHFDGLYYLTPQQNPHLAHH
IHRTSDLWHQRLGHPSSAPLHFLSKAIPHIMFDSMHVCDVCPLAKQTRLPFTHNSIKSTAAFDLIHCDIWGPHKIPTHSG
ARYFLTIVDDFTRFTWIHLMRFKSDTQILLKSFFSWVKTQFNHDIKVLRADNGGEFISMRPFLDSRGTIFHHTCAHTPQQ
NGVVERKHRHLLNVARALRFQANVPLKFWGESLQTASYLINRLPTPLLAHKSPYELLHGVPPTYSHLRVFGCLCYATNLT
PIHKFDTRARRCLFLGYPLGQKGYLVYDLDNHKIVTSRDVLFHEHTFPFAHLPCEDQQDVPILPIPLTDPHIAGPNFFET
SPTHSSPHTDPPLAVTPPDLLSSPSSSSTTTPDLPLDLPVSPSQDPTDPPHIPALPDIPSPDPDTIAAGPPLPLRRSNRP
SHPPAHFKHYQAHHAALLWPGLPSSSTSRTRYPLHRYVSYTQLSHAHRTFVSNISHLVEPANYTQASQDPKWLAAMSSEI
KALEDNRTWSLVPLPLGHRPIGCKWVYKIKYHSDGTIERYKARLVAKGFTQREGIDYKETFAPVAKLITVRCLLSIAAVR
DWPLHQMDLQNAFLHGDLLEEVYMLPPPGYCRPGEQMVCQLHKSLYGLKQASRTWFRRFSSAIQDIGFQQSRADYSLFTL
VRGNSITVILLYVDDMIITGNDEQEIQNLKQFLNGCFRIKDLGLLKYFLGVEVARSKDGISICQRKYTLDILEEAGLLGV
KPTKVPMEPELVLTTTGSDALKEPAQYRRLIGKLIYLTITRPEITYAVNTLSQFMQEPKLHHLKAARHLLQYLKNAPGQG
LLFSTTSQLSLVGYCDADWAKCPMTRRSVTGYCIFLGNSLVSWKSKKQVTVSRSSAEAEYRSMAAATCELTWLRYLLRDL
RVPHSGPARLFCDNQAALHIAANPVYHERTKHIELDCHTVREKIQKGEIKTAYVPTGNQIADIFTKPLRAPIFHTHLSKL
GIINIHTPT
>Copia-24_SB#LTR/Copia 638-5359 via tfasty with Copia-3_CP, 1 stopcodon. [Sorghum bicolor]
MDTEEEVKRKAVEDAKKAAGEHESGGNGGDDCLITKAELRNEMRSMIQGLLEMNLIGPRETRELKLELIPNDVKLEGSKN
YLSWSRRVQVILGGKGVENYLREDCVEPANKLSPEWRVWHTTNSTIVAWLLASMSPSVSKIVEAMHTSAQIWKTLSNRYS
KQGNVMVMMEIQNKADAVKQAGRSVEQYASELQYLWGELDHYAPLHMRNPEDARDVQKWVEDRRVTQFLKNLDPEFESRR
AAFCHQGSLPTMEEAVSAMVIEESRLRMMSGDNPVKxAYTTVAERLCYNCGEKGHMSYNCPLPRNYGGRSGTRGGRGGAR
GDQGGRGGRGGGRAGGRGRGRGVPQANAAMESFSTESGPQVNDVIQSPTLTGEQIKQWEQWQKSKASEASSTTPMGSVIA
TTSHFGNFANYAHFGKGTQAQALASTCRHNIEWVVDSGASKHVTGISSFFRTYTPHSYSETIQTADGTSQPIHGVGSIEC
TPSLHLSSVLHVPSFPVNLLSVSSLIDQFKCIVIFDENYCIFQEKRTGRVIGTGVRRNGLWCMNQVQSALTVATGSQERE
IYLLHRRLGHVPFGSLIKLYPDVFNDVDIKKLVCDACELGKHTRTTYPSIGLRSCESFMLIHSDVWGPCSVTSVSGFKWF
VIFIDCYTRMTWIYMLRGKHEVLRCFQDFHKLVANQFNARIRIIRTDNGKEYVNNDFRVYLSEHGIIHQTTCPSTPPQNG
VAERKNRHLLEVARSMMFQMNVPKYLWSEAVLTAAYLINRMPSRILGMASPAELLLGQQEFKVPPKVFGCVYFVRDHRPS
VGKLDPQAVKCVFVGYSSTQKGYKCWDPIGKKLFVSMDVTFRESEPYYAQPWDLDLFLEEFSSVTEGDSREGENEGVDDA
KQKVIVGTIPCPMDRSERSETQEKIHYENGGIDVRNVDYEGEGIADNENEETIEGAGDENEETIEGGNIEVNVEQEKEPI
VYRRRRFKSQGEQIIAPQPQQPATSVPNHSSDLSPSSGNVPPNLEHVEIPLAQRRDTRSNFGKPPVRYGFEHPSTDHDIA
NFLSYSRLSPAYRAFVASLQTVPIPKDWRCAKQDPNWNAAMREEMHALQKNKTWELVPLPRGKKTVGCKWVFTVKQNPKG
EVDRYKARLVAKGYSQTYGIDYDETFAPVAKMGTDRTLISCAVNFGWPLHQMDVKNAFLHGDLQEEVYMEIPPGFANSQT
AGKVCKLKKSLYGLKQSPRAWFDRFRRAVCGMGYTQCNGDHTVFYKHRGTFITIMAVYVDDIVITGDDVEEIKCLKENLG
KAFEVKDLGPLRYFLGIEIARSPKGIVLSQRKYVLDLLTETGMLGCRPCSNPIDKNHQISVGCGDSVNKETYQRLVGRLI
YLCHTRPDISYAVSVVSRYMHDPRTKHMEVVYRILRYLKGTPGRGLWFRKNGHLDLEGYCDADWASSKDDRRSTSGYCVF
VGGNLVSWRSKKQAVVAQSTAEAEYRAMALSLCEMLWLKGLLNELQVLRNETMMLNCDNIAAINIANNPVQFDRTKHVEI
DRFFIKEKLDSGVLKLKYVKSRSQLADCFTKGLGPSEVELSCSKMSMLDIFSPP
>Copia-22_BD#LTR/Copia 61-5240 via tfasty with SZ-55, 3 frameshifts and 3 stopcodons. [Brachypodium distachyon]
MDRYSTKPCVFDGVDFQFWKAKMKAYIMAQSYAIWEKIAKPYELPADNAITPINLVHVENNYKARNYIIKGLQRSDFDRV
AHLASAHEVWNALCSYHEGSTSVKEVRQDMYKKEYMRFEMNTGESLDEFFARFNKILSNLRALGVTYTDAEASRQLLSAL
DMSRWEMKVTSIRESTVMSTLTLDILYSKLKTHELDILARRTGSKSIALVTNPGRSNDGTSTYCYALSSLSQLTDEQLEQ
YPEEELALLTSRFTRALQNVRSRKRGGNNAPRCFECGDPNHFRQNCPKFLSKMSKEENGEDKKKKRPFNIKNKKRDDFAR
AVAHSIFSVINEYGEPCLSDVDIESDEDDASKGKRDINGMCLMASNKSATSRDDYDSDSNSEVELSYDELLKSASKLSSL
LDHATKRIKKYDLKIASLNSEITKLKSMIPDDDSCKSCDSIYSELTSLRSIHDDTLDKLRVALENNEKPIVHKRKHINDA
SMDTSDLTDSTSCNNCHILELKLKDANARVSHVENALHIQSGKQIIDGVCDNCIALSHQVNYLHASLQKFSSGHKNLNMI
LDKSKVSKNKTGLGFNTHAHFKANPPTIVKSLGNGIFETSNKPTNVIFKSAGIMSNDTSTIANVGHISHAKPGSRYTCTY
CNKPGHGVGSCFRLARVIKKERKQARSNSFKAHYAHDKTTTPRYVPRVNVSPSVSTCTRYIQSVPMYKETRALPTRRVSQ
YWIPKSFLSNPSTEISACVCLxALRVRKENIWLVDSGCSRHMTGDKNWFSFLKRASRAESVTYGDASTSTVVGKGTVKVT
DNFVFKDVALVENLKYNLLSVSQMIDEDLEVSFKKSACKVLDASGDLVFDISRFGKVFKADFHAASNAKFRCLVANTSTD
LLFWHRRLGHIGFDHLTRISGMNVLNGLPKLKGEKHVVCSPCRHGKMVAGSHARITGVMTDAPGQILHLDTVGPSRVQTF
GGKWYVLVIVDDYSRYSWVYFMASKDEAFSHFKSLVNRLSVEHPGSLKTIRSDNGTEFKNSYFNQFCDELVIEHQFSAPY
VPQQNGVVERKNRTLVEMARTMLDEFSTPRKFWAEAISTACYVSNRVFLRSKIDKTPYELRFGRKPVISHLRVFGCKCFV
LKSGNLDKFESRSYDGMFLGYPAHSRGYRVYVYETNRLMETSEVTFDEASSGSSPLVSNAGTHVQGKGIFLDDEDDEEDG
VPPAVHAPSVAVPTPTTTAEPKDISHAFTDESWINAMHEELENFERNQVWTLVSPPPGHTLIGTRWVFKNKQSEDGVIVR
NKARLVAQGFTQIEGLDFDETFAPVARLEATRILLAFAASKGFKLYQMDVKSAFLNGFIDEEVYVKQPPGFENPNFPNHV
YKLSKALYGLKQAPRAWYDRLKLFLLEKGFTMGNVDKTLFVLKHGNDQLFVQVYVDDIIFGSASHALVSEFSETMSREFE
MSMMGELTYFLGLQIKQTKxGTFVHQSKYTKDLLRRFGMENCKPIMTPMGSTTSLDLDxDGEPVDQKMYRSMIGSLLYLA
ASRPDIQFSVCLCARFQASPRTSHLQAVKRIFRYLHGTQSFGIWLSASSSIILRAFSDADFGGCRIDRKSTSGTCLFLGD
SLVLWSSKKQSSVTAESEYVAAVCCCSQILWIIATMKDYGVILESVPLYCDNTSAICIAKNPVQHSRTKHIDIRYHFLRD
HVEKENVVLNFIDTERQLADIFTKPLDSSRFAFLRGELGVIKPYGMV
>Copia-7_GM#LTR/Copia 141-4154  [Glycine max]
MAEGGSSSFVQPAIPRFNGHYDHWAMLMENFLRSKEYWDLIENGILMVADGIEPTEAQCKLIEEQKLKDLKVKNYLFQAI
DREVLETILKRDTTKNIWDSTKQKFQGSTRVKRAQLQALRKDFEILQMKEGETVNAYFSRTLTIANKMKAHGESMSETVI
TAKILRSMISKFDYVVCSIEESNNLDVMTIDELQSSLLVHEQRMRSCGEEEQVLKISHEDKASRGRGNGSFRGGRGRGRQ
SFNKAVIECFKCHKLGHYQYECPDWEKNANYVELEKEKDEELLLMSYVELEQDKMEEVWFLDSGCSNHMTGNKEWFSELD
ESFSQTVKLGNNTRMAVVGKGIIRMQVNGFTQAISGVYYVPELKNNLLSIGQLQEKGLTILIQHGKCRVYHSEKGLIMQS
DMSGNRMFSVLATMIPKASSCFQIVSENESHLWHCRFGHLGYNGLRTLFDKKMVIGLPSVKIPKKICIECLTGKQHRNSM
PKKSLWRASNKLQLVHADICGPIKPESNSNKRYILSFIDDFTRKTWIYFLHEKSEAFSMFRNFKAHVEKEIGAYIASLRT
DRGGEFTSNEFVEFCKNQGISRQLTAAYTPQQNGVVERKNRTIMNMVRSMLAEKQVPKMFWPEAVKWSVHILNRCPTVVV
QNKTPEEAWSNVKPMVDYFRVFGCVAHAHVPDQKRSKLDEKSKKCVFLGVSDESKAYRLYDPVSKKIIISKDVIFQEDEC
WNWGKSNEECISDVLKWNDDGDENNMEEGIENNEEEGNIEGEGSDVDTRNLSETGVSSSESTENDSPILNEGRVRGPPSW
AIDYVTGEGLSDEDGLNAMIMLTEDDPLTFEQAVKSKKWRDAMMAEIESIEKNKTWELTILPKGVKPIGVKWVFKTKLNE
KGEVDKYKARLVAKGYAQQYGVNYTEVFALVARLDTIRLILALAAQNNWDVFQLDVKSAFLHGELNEEIFVQQPLRYEKK
GEEGKVYKLRKALYGLKQAPRAWYSKIEAYFVREGFERCLCEHTLFTKSKEVGKILIVSLYVDDLIYTGNDKSMYDDFKN
SMMLEFDMTDLGRMRYFLGIEVIQSLDGIFVCQRKYAHEILGRFGMDKSNPVKNPIVPGTKLSKDEAGTKVDETLFKQVV
GSLMYLTATRPDLMYGVSLISRFMSCPTESHWLAAKRILRYLKGTTELGIFYKKNGCTNLVAYTDSDFAGDLDDRRSTSG
FAFLLGSGAVSWSSKKQPIVTLSTTEAEYIAAAFCASQCIWLRRVLEKLGHKEENSTLIQCDNNYTIQLSKNSVFHGRNK
HIDIRFHFLRDLTRDKIVELSYCNSQEQVADIMTKPLKLEQFLKLRSMLGMVDASFIN
>Copia-7_DPu#LTR/Copia 756-5180 via tfasty with Copia-5_DPu, 2 frameshifts and 5 stopcodons. [Daphnia pulex]
DYDDDGDITNETEIRQWKKKDVLARNCIMATITREMKQNLYTPGLNAAQMWTKLNLHYQLHTEEHLHLLWQNYYDFSYTA
GDDMRTHIQKLSNTADKLKERDQPLSDIQLVSKALATLPETYRIVRSVWAAVPAADRTLDHLLQRLLCEESVVKSYQRTE
APTEEAFAAGGGGRGRGRGRGREYLHGTRGGYIDKRSKGQYGADYDSRPRCGFCTKPGHEVKNCYKKHGYPGPKGDNTPG
QALMSSSKSDPRSVHAFFADSGATKHMCDQKVFFVTFTPIEPGNRTVSGKYLARTTYCFLxICNEMSLSFSGIGGTKLDV
LGSGSISISVNVNQKVNARILTEVLYVPGLGVNLFSIGAATASGLIAEFKDDKVxFYFLITNKDIxLTQLLLSNLKVLFT
RDEEIVLTGERKENTLYQLNLKPEIQQNQIEAAHLSLDTALNADLRSSITVWHERLGHIGYHTLKKMIQQDLVIGLNISG
ELDIPTTLCAGCELGKFTRSPLKIGRNRASRIGELIHSDVWGPIATPSLGGARYYVTFKDDFSGYLTVYFMKKKSEVPSL
LRLYAAMLLNETGNYILTIRSDNGRAEYINNENRGxFNSTNKICICITESFFLNVIAWFEKCGIRHETSAPHTPEQNGVA
ERTNRTLLNSVRCMLISSGLPPTLWAEAVTYTTYIRNRVLSRTIKITPFESWNGRKPNMSDLRIFGTRAFVRIPDTATKL
GARSQEGVFVGRCNTQNAFRIYIPKTRKIVVSKDVKIDEQILYRDTNNSSPLTVKLLFFFFLSLLEMDHKFFFFSQSIYI
YIFFFxKKKKKKKKKKDELDIVDTDDHAMDVDKDQPSVDQTPENNEHQTNETETPPAGANLNEITIPLDDSNHDVNDENL
PRKSTRVNEVPSDDPIHQRDVDCAPQQTRRSTRSPKYSERYIQWQQSLAKIANLSSMSAKVQDANNHSPLLEPSSYLEAI
SCADSKFWIPAIFEEYDSLVQNGTWTLCPLPPDRKAIPGKWVMTFKPGFKTTAPRYKARFVIKGYSQVFGLDYTDTYAPV
AKNYSLRLILSIAAAKNLEMIQLDVKTAFLYGILDEEIYMQQPEGFVVPGREQEVCRLNKSIYGLKQASRVWNIKFNEFL
IKFGLKRSQADPCVYYRHLRPGETDEELTIFILYVDDGLILSNIQSALTDIVEFLGKEFEVRSLPADRFIGIDMNRNRSL
GTIHLSQPEYVKKILERFNMSSCNPLAIPADPCVKLSPQMSPKNEEEKEEMANIPFMECIGSVMHLTHLTRPDIAYAVGQ
VSRYSQNPGLEHWKALKRILAYLKKTINFGLLFGGGSSELCGYCDSDYAGDLESRKSTSGAVFLLYNGAVSWFSRRQTCV
ALSTTEAEFISAAESTKEGIWLKRLHLELGAIESATPLRCDNQGAIALIHDPVFHQRTKHMDVRFFFVRDAQQEGRINIS
YIETESQLADIFTKALAVPRFEKLRNDLNIRELPE
>Copia-7_PSo#LTR/Copia 54-5092 via tfasty with Copia-9_BRa, 49.7% SW:817, 1 frameshift and 5 stopcodons. [Phytophthora sojae]
MAKPLKYTAEGIPKNWDERDWQTYKWAMKTVFQEKKLTEIVEGSIVRSELSTAQKQEVFDEKQTQIMRMVGSSVPPDTLH
QIRDKTTGTEMWGALCELYEGKTNKTAMAHRVPNLRNDLWSTKLSPGGDVNKHLSxMFNLRTELASLPYTVEDVDMVEML
LECVPNQPEFENMKAAIRYNPNFGALTPSGVRDMIRAADSRQKEFRGKNGNGQRGSQKHGGNFGRSKDKDSKSDGQQQDA
AKDAKKKKKLRKCYICESTEHLRADYPDRAKGPSGDGANATEQKRKPRGNATIRRDESEPPQPDHEDADVGVVTGVLDAM
VIDAGVDAEINDENYDVASGDAVQEVDRTDDENELAIDTSGGWWYFDTVANVHVTGNRSYYVAFTEDTSQSESIHGVTPA
LASRIAGVGTVALLTEVDGLQVAVVLDDVFYVPGAEYGLLSPGLAVEHGLQFDYDRETMNFRVMDEGRTVIVATRPRSYM
GLLCFASVYWSNCWSAGPAPVxRDCCxRVASLELWHERLGHTCQQYLKTMVDRGLMKGMLLTQRQHQGPCDACHVGKQKK
KAHRKKLDRGLEQPNQVVYVDLLIPSKDNGTRYEAVLIIMDGFSRFVTMHLLTSKASEVINARIKEYILWAERQAGRSKR
GVNWIKYLVQQVWTDKGGEFVNDAVSAWYRAHGIEHIRVGPKSSQLNLCEGTHQSIVEMTKASMHHAGFPKSLWPEVMRS
AVCVKNRVYNKDTQGIPFEMMFGAKPDHHHIHKFGALAYVHVPVSPGRRKHHGNAKLGFVLGYAEDVVGCKVYFPEEWTA
MFVADLRIAEDVVYCVRHEVSVEDADQESLRFKRSENEHELDCSMGYHEETITELGQRGTTVAPLTGCESADSQPTELEG
GEEASERCAAYEQRPSGAFEDNSAACRQATQTERSCASPAGVEGITDAIPSEVGAAMADDMDCAGAVRGYGAHVCAGQHT
DTASSLPSRGTVQQQDDQSESGISPMQASLDDEQQRDGDMISTDGDESVAGVCGTVAESLLSEKYDDVAESTEDDADEVE
PVEAGTADDDEVTVASTITSMEDNGQVELEELPIRHEVVDAGPLFPQKQIGKRTHREEAPSEELRVERGAEKQEPKRTRT
GLREYHERRRLRYLDDYVANEAQSTARILDENGKPIHASSAKIPKNKREMERSKYREFWMQADLEEIGALRAKGVIMEMP
KEDVPEGAKPLNTPRVRSLKTDRQGYVIRFKSRIVAFGNHQRPGVDFVETFAPVARMSAFRMLVALAAVLHLQLYGGDIN
TAYLNALLAIRQYLKSIEGFPCEINGHVYVVLKALYGLRQSGRDWNSELSRWFLGHGYQRSLTEPCLYYRFEGEVVVLVL
VYVDDITVATNCEEIKCKLFEELDKAYGLKDQGRLSEYLGIEVEQTPGAETLRQVKYARDVLETFGYNNAHALWKPTCDL
GLxVTTRRRTRVSSTARRxVCSCVWLATGTLPDLAYTVGQLSRFVSKPSNKHVGVLKRVFRYLAGTVDYGITYDRTQAVP
DSVMLDGYCDSDWANDPASRKSTAGFVFTLAGGAVSWMSRRQSIVALSTAEAEYVAACEAAMEAVAASNILQEVLPQRNV
QLKLGIDNQAAHVLATKATYIRRTRHIELQWHFVREQVEKGTIYLHKVKGAANPADAFTKPLDKQRLKDLLWLVGVSGAK
>Copia-8_CQ#LTR/Copia 149-2728 Fragment (C-term missing)  [Culex quinquefasciatus]
MAEEDKGERFFMPLFDGTEFPAWKYRLLVMLEDAELLHCVEVEAVDDPALTEAAGDSEQQKAAKKALLAKRLKQDRRCKM
LMVSRIHNSQLEHVQDLKTPKEILDALVGIFERKSIAGRMAAQRKLMAHRYVSGPLKDFFLEHDRLVRQLRGTGAVISEI
DVVCNLLLNMGSAYATVVTTLESMEEKKLTMQTVKCRLLDEEVKRSAIGVELVTPKTESAAFAGDKESRPKKKLKCFGCQ
QEGHKIADCPKKMQEQKEPKPSSGRTSKANAAESSSGEICFAAEKDAGYPPEKSKVRWIVDSGCSDHLVNDETLFDELTL
LAKPVEIAVAKDGESIVAHYSGTVRLHTIVGGERRRCSVSNVLYVPELRMNLFSVLQVEKKGMKVVFDKGSVKIFSNSEL
VANGARRGLFYELDLYRIESVESESLLACGRITKSLQLWHRRFGHLNMNQLNQLIAKGFVDGLKPQSGDNSVVVCEPCVV
GKQTRKPFSVRDGKRSSRVLEIVHSDVCGPISPEGANGERYFVTFIDDWSHFLMVFAMVTKDEVLERFMKYEAYVTAKFG
VQISRLRCDNGGEYKNKAFEDFCDRKGIRMECTVPYTPEQNGTSERMNRTVVEKGRAMLEDAAIDKSFWVQAIQAAAYLT
NRSPTNANEGNKTPFEVWEGRRPNVSNLRVFGSKVYVHVPKERRKKLDAKAWKGIFIGYSNNGYRVWNPETKQESVARDV
DFVENPDAVEVAEGVIQSTKKSDVPMILIRRDEEESVVEHDEVVEEDEDFESCTEPDEDVPATEPAPVPIDGAPAPAARP
DRNRNPPAWHKDYEVEYGHSASSALSYVDYSLELLDELRERLDREKRRILTSAGVPDCCV
>Copia-8_BD#LTR/Copia 1438-5559 via tfasty with OSTONOR1, 2 frameshifts and 1 stopcodon. [Brachypodium distachyon]
MRYDNIEVLTGSNFQNWKSHIEMSLGVNGLDYALREEKPKPPSTRVSGFDELMKAYEIKLEKWDNSNHVAFLVMKTSISP
DIIGALPDKGTAKEFLKAVEEQFKSSEKVYSRELLGKLLEKYVIEGNVKGHILRMVNATSKLKALEFVLNENILILLIFE
SLPSEFDQFKINYNSLKEKWSLAEMTPRVVEEEQRIMKQAKGQAFHVGSSKRKHNGQASSSKAPKKQFIQNDTQAAPKGK
GQAASTSAGDVKNTCHFCKEVGHFRKNCPGFLNWMMKRGNDEVTFVDESLYVDFSRNTWWIDSGATVHVANSLQGLSLIR
TIKARTRSIKVANGKEADVEAVGTLTLELHTGFNLRLNNVLYIPTFSRNLISVSCLDDISIACLFGSQRCVIKHCNNDVG
LGVRRGKLYMLILNSLVDVLNVSDVNVLNDKCNAEKKWKNTSTSSKLWYRRLGHISRGRMERLIKNEILLPLNFxDADKC
IDCIKGKYAKMIKKGATRASRVLELIHTDISGPLNIKSVDGFDSFITFTDDFSRYGYIYPIRERSEALDKFKIFKAEVEN
QLNEKIKVVRSDRGGEYYGRHAPYGQIPGPFAKFLTENGIVAQYSMPGEPQQNGVAEHRNRTLMDMVRSMLGHASLPVCL
WMEALKTAAHILNLAPIKSAPNTPYEMWTGKKPSLNYLRVWGCPAEARIFNPQLKKLDPKTISCHFVGYPHRGKGYRFYC
PGHTTKSMETRQAVFFEDNEVTEIREINLEEKRVCVPSPAIQEIYLPIRNINVIRNVEPEVHRSGTQPNGDPETEEDPQP
TGDQENEDPPPENDPPPSPPVRRSQRERKKAIPDDYVTFMSEDINDVGKVEDPSSYKEAIKSENSSKWVTAMEDELKSMD
TNNIWDLVEIPNGAKRVGCKWVYKTKYDSKGNVERHKARVVAKGFTPREGIDYNKTFSPVSSKDSFRIVMALVAHYDLEL
HQMDVKTAFLNGDLNEDVYMTQPEGFVVEGKEHLACRLKKSIYGLKQASRQWYLKFDEVIQTFGFTENVVDNCIYVKFKG
SRFTILVLYVDDILLACSDKDMLYETKNFLSSNFDMKDLGEASYVLGIEIHRDRSKCTLGLSQKAYFERVLKKYNMHKCS
SSPAPVVKGDKFGTFQCLRNQIETDQMKHVPYASAVGSIMYAQVCTRPDLSYVTGMLGRYQSNPGPDHWKAAKKVLRYMQ
GTKNYMLAYRKSDNLEVVGYSDADFDGCVDSKKSTSGYIFTLVGGAISWKSSKQTLTASSTMQAEFVACYEATGQAVWLK
NFILGLKVVDSISKPLVLYCDNEPAVFYTSTNKSSAAAKHIDIKYHVVKDRIQDQTIDVRHISTTHMLADPLTKGLPPSI
FHDHVAGMGLLEAE
>Copia-7_BG#LTR/Copia 142-5134 via tfasty with ATCopia63, 53.7% SW:1021, 2 frameshifts and 2 stopcodons. [Blumeria graminis]
MEDNEALGCIPSLSRDNYESWFREMKLKLKSRSVFFTVETTFEEYASTKQNRSKTIPSTSGIDGGSIKVEVLSTGLDETK
VEKYEKAEATSLFLILQALSAEDFDIIDEHKTALRVWNVLKGKYFRTNEYTANTYLIRIATFEFRQEMGLDDSWAKLKEF
RRKLISADPIMKNAYPDAALFLILTKTLPAAFKATTDGFRIQLPLSVEDKLKILNEVEEDLRLQNEKALVARQKSSMFPQ
KMRQNQNSDSDSPAYRCYLCKRSHTVARCPRLETAARLLKEHDRKKKVQESTKPRLQDKDKPKTSRSAQKQSRYHNAFSA
ETLASENEDCEECHLSKEEICKATPSDWPVDTDATSHMSDQPLLFRKLIPIVPKRVKVGGGELKSEFSGDVQMRCKDGSS
MLLSDVLFVPNLGVNLLSVRRLCQAGLNFAGNQNELFLKLGNKVIIEARMNQGLYTVTHIAEGYEETAFNSVENDRSNNN
TSYVSPSQISHQETIRKTKDKDTSMYHRRFAHLGPEKIRNLHLVTTLKKQIKIPRDLDDCEVCALTKMKNRIPKFLSPWI
NEILGQVQFDVAGPFPTSIRGNRWFLLIIDICSRMNWVIPIKTKSDAYEALKTWKTVTEHQSGKKVKCARSDNAPELLKA
IHDWKIEDGVLAQSTTIASSHQNGPAELSIQTVEFDMRAMLEEAQLPIEFWDEAAEADCYIRNRTDSGPIISNMKTSPIK
AFTGETPSIDHIRKWGCKCFYYVDKKTLPAHERHDKLVNPARVGVFVGYSENTTKHLKVNSPERGYTILSSRVVINENEK
GGTVDLKIRNAKIGPQGTPNVTMDRRPRGRPRNVEIEQKLSLPQASTEKDKPKETGEHNFNSEAITLTDPRPAHNKGDAS
REHVSIVGSSELPKMIQPSLHKAARSSENVRQDLEKTLINDQHLENLSAADMDLEKEPESDNLASETDIDTDSDSGEVYE
RYEINGNCEHQNTNRQPYEEIISQDDEENMSDGEAEKIDVEKLAMDNDSDELEEEYPVDANHSTETSSLNSQTKNSNVDT
SLANTNLEHNFSTSKHLLPLQRHRYFTRSTVQKRTSHQETEPLRDSKRVKVFIAQLIQSRRNDLTNSSLLHQLHDKDVES
ELPAEVIAGIEILSSFAEATKDPSYSEEWKKAMNEEMVSLRKNNTFVEVIPPKDANLVSCKWVYTIKIHTDSSIERFKAx
LVARGFSQIHGLDYNQTFAPTVRMDTLRLFLAVAAAEDLECFHYDIKNALTESHLKEDIFLQPPKGISIKRGYVWKALRI
LYGLKQAARDWNCLIKDSLLTWGFTQSLADPCMFTHDNGTSLLVYVDDIVASTKSxKHLDWFYKKLSTRFSAKNLGEIEK
ILGARVTRDRKNWTLYLDQEQYIQNVLEKFGFRKGAHKPKTVPLTGYEHLRPATSDDKRIDVTEYQQAIGSLMYATTVTR
PDIAFAVGKLSQFMSDPAEHHGYALKTVFRYLKSTIKFRIRYGLGGENSSFKVYSDADWASDKNDRKITSGSVTMFYGGP
IYWSSKKQRSVSTSSCEAEYIALSMCAKHGQWIAQIFRDLGLPKYIGINPVLVQMLGDNQGSIALTENAYLNERSKHIDI
CYHFIRDLAGKGRLAVDYIPTDDMVADGMTKPLARVKFQKFIEQLGINCTQVPVIVSTKQQVIGD
>Copia-5_Mad#LTR/Copia 113-4454 via tfasty with ATRE1, 2 frameshifts and 2 stopcodons. [Malus x domestica]
NVSHVITIKLDTTNYPLWLAQIVPVIKSRRLMHFIDGSSECPPPFLKDDAGQLTTTVNPDYEDWIQKDQLVLSWINGFLG
LQALSATARHQSARDVWAALQHRYASHNQSRIIQLRTDYLDRINSLADSLALAGSPITDIDLVSVIMFNVGPKFENTVAV
AQARETPVSYVDLEALLFSTELRLADPTHAVDHSIQAMAASRNRDSSRGGGRSFSGRNDGRSTRGGGSYRGNSNASWNSN
RGERNGGFYRGTPNASGNSNRGQQAPGLLGLAPNQHHASSSSTFGESRIKCQICGGLGHPAIDCFNRMNLAYERRIPSKR
LTAMVAQAPQSDKPWLLDSGANSHITNDLGKLILTREYRGNDSVGGVLGGPGLPISHIGNSTLSSNNLTFKLQDVLHCPN
ASTSIVSAYQFMKDNGCFITLFLDYFFVQDSVTAKILFWGKNRDGVFPIHSSSKDFHGHVAMLGVRVGSNIWHSRLGHPS
SQVFQFLFSRNKLPSSGKISMNNFFCHSCPLGKSIKLPFSPSLSVTSHPLELIHSDVWNASNLSISGYKYYVLFVDNYSR
YSWIFPMRLKSEVYSIFVSFKTMVENQFSTKIKMFQSDGGGEYTSTQFKFFFTQHGIHHRLSCPHHPEQNGLAERKHRHI
VDTGLTLMAQASMPPAYWAEAMHTAVYLINRLPSKILDYDTPFQKLFGKEPNYTFLKTFGCACFPYLRPYNNNKLRYRST
KCVFLGYSLNYQGYRCLDISTNRIFFSRHVLFYELNFPFSELSSTLASHKTSSSPDPALEIIGPLPTHTSxHTSPLAKPI
TQMPTSSQPHPSGAPHHHPTGAIQHHTSYPTLPIPPASMPTSSITTQPAPPVHSSPTVPQQPTPAPLHVYHRKNSRPPAS
EPVPPTSSRHPPVPATSSVREMNAHSMVTRSKSAGLKSNSKYAHFADASVSPNVFFEPTCFSQANKFPEWRQAMADEFNA
LQRAGTWVLVPRTCSMNILPNKWVFRIKRNFDGSIQRFKARLVANGFHQQPGLDYGETFSPVVNHSTIRLILALSVQFRW
PVRQLDVQNAFLHGFLSEDVYMRQPSGFVDSQFPDHVCKLQRSLYGLKQAPRAWFQCFSSHLEDLGFTPSQADTSLFIYL
LGSIRIYLLIYVNDILITGNDLSHITQLIADLGRRFSMKDLGPAHYFLGMEIVRTSDGLSLSQHKYVQDLLSRTKMAAAK
PVHTPAVSGRRLSLQDGDPLPDPMEYRSVVGTLQYLTLTRPDIAFPVNQVCQFMHQPTSQHWLAVKRILRYLVGTPSHGL
TYKPGSILLTAYSDADYAGDPDDRRSTGGYCIYLGSNLVSWSSKKQGGVSRSSTEAEYRQLAYTAAAISWFRKLFHDLRL
PLYCPKVHCDNISAISLASNPVFHARTRHVEVDYHYVREKVVRNELKVLYLSTHDxIADIFTKGLSVTRFRYLLSKLPVL
FRPVSLRG
>Copia-5_ADe#LTR/Copia 118-4743 79.9% sim to Copia-7_ADe, SW:4562, [Auricularia delicata]
MATAATTESSYPRITPLTGREDYAIWRLRIGFEAMNRGFDEHLEPGAAAPVPLVPTSDNATACNRRDIEITSWHKTAKRA
AGFVCSHIGDNILGKLRSVTSSKTGFTARQILDALDKEYEKTNTAISSFYTLERLFTTKYLEGTPIQTHVNAIRDILALL
ETYGAPLPEQTGAFALLLSFPKTAEWELFRAPILAAVTDTNPLTFAQVEARLQSHALGAEAEAAANAAAHAAAAHAAAAA
AAAKKPSSRVAKFCKFHGAGRHDTEDCRDLKKALELVRASKAAGDSSMPSSSSKRDTNARDRPGATAHSATKDDMGYEPD
DPGQGSAHVVLSPRMLANLEKFLSYMAHSANAANGKPISHVNILDTGASTSMTPRRALFKPSTFIAFDKPKRVRFGDDSY
AEALGCGQIVFRTTVNGQHYELTISDVLYIPTFKLTLVSVSSLDSKGYSSVFGSGRCKVLKGSTCLMHGHRQAGLYHVDA
TPVEFPTPARPSVAQAPTHTEHAAHTATPKKGKTLDINLLHRRLGHLNYDALKRMVNDGRVNGVSKLSGKPARCEHCALG
KMKKLPFPRGRQRATRPLQLVHVDVGGPVKHPGHDGSRFWITFTDDHSGHPWTYFLKRKSQALITYKQWRLDVTAYFKDQ
LGTLAFSPEFVAFLRSDNGGEFTSAAFEAQLAADGVMHETTAPYTPEQNGVAERMNQTLVTTATTMLSESGLPPSFWVEA
MRCATTLIAQRPTSAASGKSPYEVLFARRPDVSRFRPFGCLAFSLIDKDHRLWKFGPRASRCVMLGYNLGSKDYRLYNLH
TRKIISSRHVLFNDDSMAGFKVAPSEERLHPDQWGPLLSDSVGVPDSTLPSASDGAPAVDLNEQEPHSVPPSPAGPVQEL
PAADAPAPDPMPPQMAHPEAERAHTPPQPQVANHQPRYPARERRQADPNREYREAIQKERERLDNAAAERELRKRLEEED
RVIEERRTAGQQGAGPDLDDAGLAGLVQLLDELHLDPDEAFAGVANDSPRPHQLPRTLREALNGPDAHQWDCALQEELQA
LQTNDVYEEVPIPSGAKPITSKVVMRIKYDTDGNLERFKLRIVARGFVQREGVDYNDTFAPVANLESIRVICALAAKYDL
ELDQLDVSTAFLNGRLDEEIYLTPPDGVPIRPGHCWRLKRSLYGLKQASRTWNKTFDAALSTLGFIKLNAETCLYVLREN
GKLCFLVVYVDDLLLAATDRPFMDLVKGRLTKLYKMRDLGRASSILGIKIERHRANRTIHLSQEHYVESVLKRFGLQDSR
AYDTPMHHSAKLAASDPHDDTTLQRYEISPGHIVSYPQVVGSLMYAMLGTRPDLAYAVGVLGRYAAHPKRCHWEAAKRVL
RYLRATSSMMLCYEGSDVNQDMDFHGFSDADWSGDPDTSRSTSGFVFISNSGAIGWSSKQQGMVALSTTESEYIGLSNAG
QHIAWLRSFFEELGHPQTRPTELKCDNEAAIVLTKDPQFRGRTKHINRKFHFIRDDLVATGKVALRYVSTHDQVADIFTK
PLSAEKHRKFCRAMGLRLRASG
>Copia-5_SMo#LTR/Copia 26-4441  [Selaginella moellendorffii]
MGKTRPRNEQQGYATLDRVTARLQQKKRKGKIRAVEKFIQDQGWSVLEIVEEMTTSKAIPIPLFTGTDFENWAKEISFLF
LRDNCLRIVQGTEPKSAASDEDEWQVRNDKAVSTMGIGLGKLHHHHLDITKTAEENWTALKNVFGNQASAEISKVELKSK
LFGLKMAADETPAAFLGRLKSVLSQLSSLGEAVTENDKRAVLLNALVRPEFKSLKTMLKNSTKTFIEMQAALINEEEPAE
DQTPADTNTTTALFVNSKQTKNSPGKGGSASSFKAGASNTASSFRASNVGDSNSRERKGECNYCKRVGHYARECRDRLAG
RPRGLGRKNARTGYTNQSRALMVRAIPEPVFVQQQDQDVIWLDTAANMHMTGRREAFLNLRKISTGRQVGLGDKSLLSVV
AVGTVQVQLASGELRDIRNMYFVPGLAYHLFSIGAASDNGFYFIFNAKQAIMRDEKTDQAVAYGQRYSGLYKLDATMVVP
DKQPDRALSTRASNLQLWHERLGHVHEDALKAVSRDQAHAQEFEFTGKLEFCEACVLGKQARTSFPKFSESKSSQPLELV
HTDVCGPLHVQSHRGMRYFLTFIDDYSRYTVVRLLAKKSEVLDHFKVYKASAENLLGKQLKTLRSDRGGEYKSRNFMKLC
NESGIQQQFTAPDSPAQNGVAERMNRTLMESARSMLIHAGMPLSFWAEAINTATYIRNRVPTQPLADIPYRLWTGKQASL
RHLRVFGCIAYAKVSNSHRRKLEPKSIPCIMVGYCLETKAYRLYNMATRSILISRDVKFDENSLYKHRYKNPETPSYVLF
YEEDVSRASGPQPQVHGQQQPRVQQLQPQQQVEAEQQPPLEPSPVTPEQEDEAVTPFDDGFIFSGLFDDPEEEESPPGQP
QAQPSTPGAARSQQEADPIIPGKPFRTITRSGRVSYLSQAAQDAQDSGLKLLSVMEQFSREPRTVCAALQSPEAGQWKAA
MQEEYNSLIRNNVWELVSLPPGRKIVSTKWIFKRKLDATGAVTRYRARFVARGFSQVPGVDYSETFSPVAKMSSIRIILR
LAAYWDLEVHQLDIKTAFLYGELKEEVYISQPDGFIVPGQEQKVCRLKRALYGLKQSPRAWYEHMDRFLSSIGFKKIFAD
SNVYIFRSGNAFSILALYVDDNIMAARPPTIVSYFERQFLSQFEISATGRLSYCLGIQVLRDREAAVIELSQAHYVEEIL
QKFNMQDCKPVATPMDPGLVLSIEQSPNSEEEKAVMARVPYRQAVGCLIYLAISTRPDLGFAVGAVSRFLENPGEVHWSA
VKRIFRYLRGTAGYRLSYRSSSSVSSSSGSSRSMQLVGFTDSDWAGDKDTRRSTSGYLFFLEGGLVSWSSKRQAITALSS
TEAEYIGATTAAQEARWLTDFLEQIGVPVQQPVTLFCDNRSAIELSKNPKFHGRTKHFEIKVHFIREQVLANRVQLSYVS
TKQMTADIMTKALSKDKFQQHREGMSVIDSHG
>Copia-6_CP#LTR/Copia 67-4421 via tfasty with Copia-91_VV, 81.1% SW:4281, 4 frameshifts. [Carica papaya]
MASGELPSSPPEVSSGSYHHTATTRAVSELPSSCITGHKLDGSNYLQWSSSVRLFIRGRGRYGHLTGELMPPPASDPNAQ
TWEIEDSMVMSWLITSMTPEIGENFLLYETAHEIWKAAQEFYSSKENTSAIFEIESTLHDLRQGELSVTQYYNILTRSWQ
QMDAFEERHWSCPEDAKNFKVFVEEKRVFKFLLGLNKNLDEIRGRVLSTKPLPSLREVFSEVRREESRRKVMMGENDQPH
QTENSSALTTRAIDSRTKKTRPWCDHCRKLGHARERCWKLHGKPSDWKPPSGEWKMSKAETSSKLQGNHVTAEEVTFDEM
GKDPFTPEQLEALQQILSKKSHPVSASVAHKGNIHGLSAFSEKGQAWVVDSGASDHMSGDVSMFQNYRRCEENFSIRIAD
GSLSKVAGMGSVNLSPNLTLRSVLHVPNLDCNLLSVSKLCEDLKCAAKFVSNMCDFQDLDSGRTIGSARMSSGLYLLQVD
TSKRQAHNAVCANSVPISENNDHDIMLWHYRLGHPNFMYLKKMFPLLFKEKDPVSLQCEVCQFSKHTRSSFPSLPYKPSK
PFALIHSDVWGPSRVSNISGTRWFVSFIDDHTRITWVFLMKEKSEVGSLFKKFHTMIRTQFHATIQVLKSDNACEYFETT
LEKYFTEHGIIHQSSCVHTPQQNGIAERKNRHILEVARSLMFTTHVPKYLWGEAVLTATYLINRMPSRILQFQSPTRILS
KTFPDSHILNTLPLKVFGCSAYVHVHKHLRGKLDPRAIKCIFVGYSANQKGYKCLVPETRRFYNTMDVTFFENQPFYPTT
DIQGETFTQEYQLWDVSVPPLYPQNPSPDKPSLETEPETSQKKSEPKPLQKDTLPATSELRVYTRRNKGKAPESSKHCHE
SPTDPGNVISVPTLDSVDSDIPIALRKGTRTCTKHPIQDYVSLDKLSSEHHAFVSRIDSSSPEPRTIHEALEIPEWKLAV
LDEIRALEKNETWELTDLPPGKRQVGCKWVFTTKYNPDGSVNRLKARLVAKGYTQSYGIDYQETFAPVAKHNTIRVLLSL
ASNLDWPLYQLDVKNAFLNGDLEEVYMDIPPGFELTDNSQKVYKLKKSLYGLKQSPRAWFDRFTRAVKHKGYEQCQSDHT
LFVKHCISGKKAILIVYVDDIILTGDHLEEIQKLKEFLAKEFEIKDLGVLKYFLGMEVARSKKGISVSQRKYVLDLLKET
GMLGSKPADTPMDSAIKLGSRISDKTVDKGRYQRLVGKLIYLAHTRPDISFAVSTVSQFMNQPTEDHMSAVYRILRYLKK
TPGQGLFFQKTDRRGVEIYTDADWAGSTNDRRSTSGYCTYVWGNLVTWRSKKQSVVSRSSAESEFRALAHGICEGVWLKR
ILEELKVPNDMPMKVWCDNQSTISMAKNPVHHDRTKHVEIDRHFIREKLEDGTITLMHIPTNQQIADILTKALPKRTFDD
IISNLGLLNIYVN
>Copia-6_ADe#LTR/Copia 168-4793  [Auricularia delicata]
MFSTMSSSYKLSTYSGEKLSGPASFADWFSDIELWLISNDLLWQYVDGPCQWAPSQLRAAHNERQAELEKAAKDAGETHK
KEPYSALPGVPTSDGEWQARRMICYAGICMTVTSECRKAIKASSKNDPAATVADLTARYGTDSTSTRILLFKELLTGRKP
EDKSWSKYHDEVLAKAKRAYATSGQLTLEEFVFMTLIVSAPPDWEDTLRALQHKHGSNQHEALVQDLTSEEHLRKSRATE
QAHIQALVAHRAAATPQKKKSRGSGCTNQLCITAGRADSHDLTHCYEDGGGAVARRPPWFKSHAPKANAATTPTPAVAPA
QAPRAMTAFIEDVPDSGGEDSDASYESGASIGLLAHIGNPASPAPCTATANPELPPTPVPSPIFAEDPTPRIALFSYGDR
AGALDTGANDHFESDITRFSNYRLLDKPVYASGLFGRGPPSIGIGDVHYRLGKGRSLRLKGVLHMPGATLSLISISKLCS
EDDSFEAVFDSAGCVVRRKGSGKIIASGYRSSDGLYMLPDSTQKVAGSARRSSTASDILTWHNRLGHPAMDAVIRLARAG
QLPGLHVSSSAPIPICEHCLAAKGKVQPFPRESETRATRPLERVIVDLTGPVDTESHSRKLYGTGLIDECSDYVVYDFLR
TKDEAAAAHETTFSELEAIAKEKIAVVRTDNGGEFEKDYHEMLLRRGIVHETTAPESSEQIGRVERTHQTIARRARAMLS
AAGLPKSFLAEAWRTAAFLNNRLPRKRLKGLTPYERFHGKCPQYVRIREFGCICYSIRGKKKCKPKLNEKATRCIFLGYY
KHSKSYRLWDPATRTIVKSRNVFFIESRDIHRLSSSIHTADPNLVVPEPTPDAVCAADDDSDSSSDAASEGHVPKDEEDP
ENRTLGPFELPQAVMLPPPPPLVLPETTVNGTRRSNRVRNPSKKVTETTDKATRRAQHVGAAGLSTEKSSEICDKLNASY
KSGELVNEMLGSALYDGLPLRGMLSVATDVRNSLYALNAAGEFPERIPFTYEQAVNSPYARQWLKAMDMEIQSMDEHGVW
DVIPLENVPSDRKIVDCRWVYNIKHNAEGIPIQYKARLVAKGFTQRPGLDFVETSAPTCRPESVRLLLAIAALNDWETRH
IDVKTAFLNGELEEEIYMRQPKGFEVPGNNALKLLKALYGLKQAGRCWYKKLKAVLISLGFTCCVNDPCVFIRKEKDRTC
ILAVHVDDMLMVGDSEAITAVVTALASHFTITDLGEAHWFLGMKITRDRAKRALTVSQPAYTEQVLRSFGMESCRPVSMP
GVPGKYLAKGRALTEEERTHMLRVPFKELVGSLTWLSIVSRPDISLALTQVSQFSADPKPWHFEAGKRILQYLRGTSDWG
LHYCPDAPLAGVTGQVSAQTAQYHKGHGPKCYTDADWANCPDTSRSTSGYAFMFHNCLVSWSARKQKGVALSSTQAETQA
AKEGGKEAIWIGNLARKLGFHRGSIPLGMDNQSAIALTSEPKHHDRSKHMMTQLQWLRECIEEKEFAVEYVPTDEMLADI
FTKPLSPAKHKGFTDKLGLRSA
>Copia-8_PD#LTR/Copia 17-4026 via tfasty with COP16_MT, 80.5% SW:3744, 2 frameshifts. [Phoenix dactylifera]
MEMEPIPEKHDGNVGDLNKPFRFKGAHFKRWKSKVLFYLSLLNVSYILTEKNPTKISTDEMTDEEYQARQEKVDKYTRDE
YNCRCYLLNCLADNFYDYYNTTYSSAKSIWKALQSKYDTEEAGAKKYAASRFFRFQMVDGKSVAEQAQDFQMIVAEVRSE
GIKIGDNLIVAGIIDKLPPSWREFQKSMRHKQKETSLETLITRIRVEEEARGQDALITQEGNEHSTTKVNLIASNNALPS
DHFPKNSHLKPKRKNMKFYGKPHSRRNPSQKNKNQIPPSQNHSFGACFVCGKSGHIARTCRFRKRRPVPQANVTEEPLVA
MITNIYMVQCVEGWWADSGANRHVCYDRNWFKNYTPFKDEKTIMLGDSSQTKVLGSGEVELKFTSGRVLLLKDVLHAPSM
RKNLMSSFLLNKAGFEQTMESDQYVITKNGIFVGKGYACDGMFKLNIENNKASSSSVYMLSSVNFWHSRLCHINSRYVGI
MSSLGLIPRLTKDFEKCEICSQAKITKRPHKSVERKTELLELVHTDLCEFEGILTRGGNRYFITFIDDFSKYTYVYLLKN
KSDAFEKFKDFLQEVENQFGRKIKRFRSDRGREYESMGFNTFVQSLEIIHETTPPYSPASNGVAERKNRTLIDLTNAMLI
DSSAPLNLWGEAILTACHVMNRVPHKKTKLTPFELWKGYKPNLGYLRVWGCLAFVRLTDPKRPKLGVRATACAFLGYAAN
STAYRFLDIENNVFFESGDAIFHEEKFSFKTKNSGGQHFRENILCEPSSSTSLQNHENLEVELRRSKRVRVEKDFGPDYY
VFNTEETPLTLQEALNSPDAVFWKEVVTDEMDSLISNQTWKLVELPQGCKTIGCKWVLRKKLKPDGSIDKFKARLVAKGF
KQKADLDFFDTFSPVTRVTSIRLLIAVAAIHNLSIHQMDVKIAFLNGNLDEKIYMDQPEGFVEHGQESKVCKLNKSLYGL
KQAPKQWHEKFDSCMIENGYKPNECDKCIYYKSWKNAHVIVSLYVDDLLIFGSSLHVINETKKLLCSHFQMKDLGEANFI
LGMKISKTCDGIFLNQSHYIERILRKYNYFDCKHVATPFDANIHLFPVENEIDVINQKEYASIIGSLRYATDCTRPDIAY
AVGVLSRFTSKPGREHWHAIERVMKYLSGTKNYGLFYKKYPAVLEGFSDADWNTLSGDSLSTTGYIFTLGGGAICWKSKK
QTIIANSTMEAELIALASASEEANWLRDLLHEIPLWEKPVPPVIIHCDSTAAIGRVKNRYYNGKSRPIRRKHSIVRSYLS
SCIINVDYIKSCDNLADPLTKALSRERVWNTSRGMGLKPIQSRTTCEDTQPGDQRS
>Copia-11_CP#LTR/Copia 53-4105  [Carica papaya]
MTSNNLFSFQFSRLTKENYESWCLRMKVILGSQDVWDIVEKGFTPPEDEXSLTQNEKDAFTRTRKKDQQALALIHQGLDE
SMFLKVADATNAKQAWEILKNSLQGVDKVKKVRLQTLRGEFEALRMKDVESISDFCSRVKSIVSQMRRYGEMMEDVRVVQ
KILRSLPPKFDYVVCAIEESKDLDTLTFEQLEGSLQAHEVKRRQEEPLEQVLKSKASLNDGGKQRGRGRGRGRGRGRGQA
FKRNETQDDADNEDKSQPSNRGRGRGRGRGNYRNSNKSNIECYNCHKYGHYAWECRNTLNEKEEQANFVNDKQDEEETTL
LLACKEGDSDTHSSWYLDNGASNHMCGNKEKFVELDEKINGNVSFGDSSKVQIQGKGTILISSKNGGHVLITNVYYVPKL
RSNILSLGQLLENGYEIHMKDYCLWLRDQSANLIAKVHMSKNRMFILNLKTIEARCLKASVEDEAWCWHMRFGHLNFGAL
KAMGEEKMVKGMPLINHPNQLCEACLLGKHSRRSFPKEATTRATKLLQLVHADVCGPINPPSFGKNKYFLLFIDDFSRKT
WVYFLKQKSDAFVAFKNFKALVEKDCGCEIKSLRTDRGGEFTSKEFHDFCESNGIRRPLTVPRSPQQNGVAERKNRTILN
MARSMLKAKNMPKEFWAEAISCAVYLSNRSPTSSLKDMTPQEAWSGMKPNVNHLRVFGSIAYAHVPQQERSKLDDRSVKH
IFIGYDANSKGYKLYNPSNGKIVVSRDVEFDEKATWNWEKKEENAYDFFPYFEEEGQETMVPLQEATPPHSPTHVASPIS
QGSSSERPRKMKSIQDLYDETEEITNFDINDLFCLFLDSEPMNFDEAIKDARWRQAMEEEIKSIENNNTWELSTLPKGHK
AIGVKWVYKAKKDSQGNVKRYKARLVAKGYKQKHGIDYDEVFAPVARMETIRLLLAISAQMKWKIFQLDVKSAFLNGYLN
EEVYVEQPLGFVVEGHEDKVLKLKKALYGLKQAPRAWNSRINKYFEDNGFVRCLHEYALYVKYHPNGDILFVCLYVDDLI
FTSNNPSLFEEFKKNMLLEFEMTDIGLMSYYLGLEVKQMEDGIFISQEGYARKVLEKFKMLNCNPVNTPMECGVKLSKFD
NGEKVDPTLFKSLMGSLRYLTFTRPDILFAVGLISRFMEAPTTSHMNVAKRVLRYLKGTIDFGLFYSSSNDFKLVGFCDS
DFAGDIDDRKSTTGFVFFMGDCAITWSSKKQAIVTLSTCESEYVAATSCACHAIWLRRLLKELHLTQDEATKTFIDNKSA
QALAKNPVFHERSKHIDTRYHFIRDCIAKKEVELKHVKTEDQVADIFTKPLKFEVFQKLRANLGLKRRFAN
>Copia-10_SB_env#LTR/Copia 6473-8275 via tfasty with COPIO_env, 1 stopcodon. [Sorghum bicolor]
MDSGKRKNPPRGARPRSSDVGGRSADRSVRGRGTSSRSSGAAGASTGDEGIPAPLHTHTVPCPPPSHQARVRSQAVPDPV
QEEGRSMDPNVLRRSPLHLSEVGARRTLQWHPQFNAHVRRPSIPSGTLPRFGIDYKKRLTDLRTQRSENPYKFIKFEGVE
ERFWSQFHNDFYESVLYKGSKATKNGPLFQHKFVVLKSLQDFNHPEVTALIQRLEEWRILPLMTLEKNWNEEILFQFWAT
LWVDQASRVLHWMTQGVHYRLDFITFSRLLGFDHLDRDAPRLSTLFAEGISEADIDAAEMYKPGAHPDLKTTHLKPYFYV
LNNLIRYTIDPKFGDSIHLRQDAPxILARFGANGGRFGVSDFMWNKIADASVDPNKYLPYAPYLMHIIEQVTGMQFSHPC
IHAPVRAKHLGPPHAPPLSPAGAATPGAATPGFATPAGAADAHGEDIPPQGTGRGRRSPTRHALQRFFSYFCYCQKKTDQ
RLRRLEEKADLTPSSPLREFQDPYAEYDNMHRTSADDDEEQQDPPSAFDSSYGGGIPAGFSMEDTKAGFAYQDLFGAADD
VTRASVSAAPPHDQSTSAHPHGKGPLRTIINYSSDDDDDDE
>Copia-11_TC#LTR/Copia 108-4111 via tfasty with SHACOP4_MT, 79.3% SW:3535, 3 frameshifts and 2 stopcodons. [Theobroma cacao]
MASTSFNVVAPPVFNGDNYPIWAVKMKAYLRVFDLWEVVEVGGDPPVQRHANPTMAQLKQHSEEVAKRYKALSCIHSAIS
DSIFTRIMACENPKDAWDKLQEEFHGSDRTRQMQVLNLLREFEVLKKKDNETIMEYSDKVIKVVNQLRLLGEDLPDKRIV
NKVLVSLPDKFEAKISSLEESKDISRLTVTELVNALQAQEQRRALRQENTVEGAFITRTKEKWSDNNRKNDSEKRDKDRT
SGDGKQGKPRAKYPVCSHCKKRTHLEKYCxYRPNVKCRSCHQLGHVERVCKSKGNRPKEKATVAEHQEIVDEFLFMVRKS
EVSNKKHTWLIDSACSNHMIGKEENFITLESYKSQVEIGNGLNLQIQGIGTVAVHTLAGMKSISNVMFVPEVAQNLLSVR
QLIEDGYILLFKTNACTILDASGKELFSVEMRNKCFSVDWMKVKHKAYQCLSTNSEIWHRRLGQVNYRSLMHMISNNLVE
GLPSLTQTDRICSTCQYGKQCRVSFPKSRNWRAKQKLQLVHSDVEGPMKTLSLNGSLYYLIFVDDYTRYSWIFFMKHKYD
VFNLFTKFVAAVENESGSNLMILRTDNGGEFNSTEFKEFLARKGIKHKLMVAYNPQQNGVCEHKNRTVMEMTRCLLFEKD
LPKEFWAEAANVAVYLLNVLPTKALNVKCPYEAWHGTKPSVAHLKVFGCICYAKIPDGKRTKLDPKSQLAIHLGCSNLSK
GYRLYDLKTKKVFVSRDVRFDEDLKWNWKTTAVEKSKSNNTTGDVNEGLKWNLEIATDENNADGDENLFDDEESVDENDE
SLAVRGTRPLQEIYGRCIMAVIEPNEVSKALKDEKWKEAMDAEMQMIARNRTWYLVDRPQGPKVSGVKWIFKTKLNPDGS
VNKLKARLVVKGYSQVQGVDFEETFAPVARYDTIRVLTALAVKENWSIWHMDVKSAFLNGVISEDIYVExPEGYVVQGKE
DKVCKLVKALYGLKQAPRAWYDRIDSYMREKGFIRSNNEATLYVKKSGNAVKLIVSLYVDDLLITGPDDEFLKEFKAQMK
FEFDMTDLGKMSYFLGLEFQQLEGQICLYQSKYAEDLLKKFKMNFCKPAPTPLTMGWKLSKDDGEIKTDARLYRSIIGCL
LYLSATRPDIMFATSLLSRFMQEPSEMHMKAAKRILRYIRGTTTFGLKFVKQDSNHLQGHCDSDWAGSVDDSKSTTGYCF
SFGSAIFSWNSRKQEVVAHSSAEAEYIAASSATNHVLWLRKLLDDLGFRQFIGTVLWVDNMSAISIAKNPVQHARTKHIR
VKFHSIREAVKNDEVVIKHCSTNDQVADIFTKSLNKDKYYYLRSKLGICEINSKE
>Copia-12_Mad#LTR/Copia 610-5247 via tfasty with Copia33-PTR, 2 stopcodons. [Malus x domestica]
MTTSSLKIDGVLGMLTIRLQDDNFAKWSFQFQSVLEGYDLFDYFDGTNVCPPKYVVSLESGVTKEITNAYREWIKTDKAL
LSLLLATLGDEAIKYVIGSKTAHEAWTHLTDRYATVSRARINHLKTELHTIKKGVDSIEKYLLRLKHLKDQLLAAGENIS
ENDLIVAALAGLPPEYNMIRTVIVARETPITLKEFRAQLLSAERTAEEYQSVLHFPMTGMFSQGESSATGARRQFYHGES
STSHNHNGAGFVGQYQRNNGTFGGLNGNQGGNHHNGSQSNSNNSNAGNFSRTNTGFNGSRFYTKPRFTGGNSxGFNSRSN
GNFSGPSNSHRSNSNWNAWNGNNGHKSNIIPECQICSKxGHTTLNCYYRNEQLPSSNGPIPECQICGKRGHIALNCYHRS
NYSFQGAPSPQSLNALTAQSSTDFNNNQAWIMDTGATHHMTSNLEDLTMIAPFDGDQNITVGSGECLPVKNTGSSSIQTS
SKPLNLYTVLHVPELTASLISVYTLCKDNNYDVILDEFGFWVQDKATKTILMRGKSSGGLYHIPKQFFKYNQLRQSTPKA
FLGQLIKASLWHHRLGHPTNEVLHSMLSHSQITYTSDINKHVCSFCLKGKMSRQVFETRTLGSVKPFERISSDVWGPSSV
VSIEGYRYYVSFIDDCTKFTWIFPLIYKSQVLEVFQSFYAFIQTQFQAVVKFFQSDGGGEYMSLVFQKFLSSKGILHLVS
CPYTPQQNGTAERKHRHILETAITLLTSANLTHNFWYHACAHAVFLINRMPCKSLSMQSPFFQLFKVQPVLHSLKIFGTA
MYPYLRPYNSSKLDARTDQCVFVGYALGYKGVLCYHRAKRRLYISRHVIHDEQTFPFYYSSSPICAQNVVGPVSRHHPVI
VPYVLPVHAEISQRDSSSSQSVSSENSVHDQVISAIQVSSQSSPDSTGVQVTSQLQDSSPPTTLLSAPTLNSLLPVHNPA
SIEVGPPFYPNNDSSLVHTISPPVSSSEHPMQTRLKSGAIQRKDYSAYSAQSPFSSLSGDFAFCGYTALLTITESDEPSS
YKAAVKSEKWKEAMVDEFIALQRQGTWILVPPPLNRNIIGGKWVYKVKRDQHGVISRYKARLVAQGFSQEQGLDYEDTFS
PVVRHSTVRLVLALTASQKWSLRQLDVKNAFLHGDLQEEVFMKQPQGFQDSEHPDYVCKLIKSLYGLKQAPRAWNSKFTT
YLPTLGFVVSDSDTSLFVKTQGADIVILLLYVDDIIITGSSSLLVQQVIDALGDVFDMKDMGKLTYFLGLQITYQENGDL
FISQSKYVKDLLKMAGLESCKPCSTPCKPHTQLLKDEGTSLPDPTLFRSLVGALQYLTFTRPDIAYAVNYACQFMANPTD
VHFSLVKRILRYLQGTVACGLTYSAHSQLHLTAFSDADWASDINTRRSTTGYVVFLGLSPISWQSKKQGGVSRSSTEAEY
KALANATADMAWVRLILKDLQVYLPTPPLLYCDNVSTLALCSNPVFHTRIKHLDTDFHFVRERVQKGDLQVEYISTKDQV
ADILTKGLHGPLFLHHCCNLKLGYPS
>Copia-12_DPu#LTR/Copia 41-4215 via tfasty with Copia-8_DPu, 1 frameshift and 1 stopcodon. [Daphnia pulex]
MASSTEEKSMKAVQFNGSNFAVWKFSIFLKLKLRGLAPIVEGLRPKLLQAEPEDIARWVRGDIHAMRYIFETCNEEQQQN
LLTCDTSHDMWLSITSQHQQGTAERRQSLNQSFLNYKFKPKHSVRAHVESIKLLAKNYSDAGGIIDDAQICNKVLTSLPP
SYDHFRTSWECMTETDKTLIALMTKLCSQEERLNLRTGGQKSPDDKAFFGKTPAHQSTFTSLQNRGRGNSRRFQGGRNRS
RGSGPPIEGRNVRFADSNGSSRKRGRCNNCGRPGHWADDCWDDPYDEPYNPSWKPKEPSSAINLSWRKGKPAKEDTAKVA
SHHIPSTTEFLLDSGATRNMCHQRHLFRSFKEILPGTRWINGIGQDRVEVLGIGDVSITPIINGDTRPFTLRDVLYSPRI
GVNLVSVQRLPTTSHSVHFYESGAFITRRGILIMTATRVEEALYQLNFALSTDVAMLVRSSFKISLRDWHERFAHQHSEL
IVKMADSNAVTGLNLPSSNRTPLEKCHDCIAAKMTRKVFPHSTSQQSRIGALVVSDVCGPMQVASIGGARYYVCCRDVFS
NYRSIYFVKHKSEASDCSRAFIASVHAQTGNLVAIFRTDGGTEYLKLDPWLQRKGIIHQTTCRSTPQQNSIERDNRTIVS
LSRPCLLSNKSLPLSLWAEAASCVVYTLNRSLSTTCLVKTPFEYWTGKKPDVSNLRKFGSEFYVLVPAEMHQKLDAVGKL
CFFVGNSPTQKEDRYWDPSTGKVNTSRDVSPIEHRYEPRIPAINVQNGIDVFSTxEKYGEQQPEDDEPPDEQQPMELGNH
ALLPDEAEDNRPNAEEEVQPIVPPAVIEPTVEPPVLLPRRSQRQGRKKEIVSMLAALDQDDEPNHYRDAIVAHDAPDWKI
ATRKEYDSLIENDTWELITPPPGHPIIESRWTFKVKPATRTREKIFKARFVAKGFSQVPGVDYNADEVYAPVIKHDSLRM
LLALTTRLDLFLHTLDVKTAFLYGDLKEYLLVKQPEGFVQPGTEDLVCHLLRPLHGLVQSPRNWNDKFNFFLEKFGLTRS
TADPCLYYNRGENSDDYTILGIWVDDGILATKTKEKAAQIIKYLESHFKMKSGDADIFVGLEITRDQEKRELYVHQNSYI
QTVLKRFRMTGCNSSTIPADPNSRLTRADCPKNTGRPPMDSTYYRCAVGALLYIGRMTRPDILFSVNAASRFCEDPGKPA
LSAVKRILSYLSGTSDYGIRYDGTQDNTLTAYSDSDYAGCPDTSRSTSGMLFMLNNGPISWTSHLQKSVAQSTCEAEYYA
AGHASRTIVWLRELLDQVGFRQPEPTPLLCDNNSAISMVLNPVFHEKAKHIRTKHHYIRTQQENGIVKMIKVPSEDQLAD
GLTKPQPTAYFQLNRTRIGVRPAPQQVSNNLN
>Copia-10_PSo#LTR/Copia 24-4675 via tfasty with Copia3_XT, 65.3% SW:1437, 2 frameshifts and 1 stopcodon. [Phytophthora sojae]
MVKDTQVPFAGLKFNGNPNDFQRWKDAVVAHLVSKSNSRKISEIQAGRAAPRHGFQDLLLRPAHIADPGPDATGDARNQH
EYEVALLDEVDSYISDMFNRTLPHTYMNQLSTPLSAQTVAAFWAQLEVDLGKSNAMGMVELIMEFEKTMTEDFKSVAELF
QKLRNVRNRLNRQGQETLRVHLLPSQLMIGKVLAMLPGHLWGPSVTFSQEEFTLEKIETKLKSIFGNKSKAEIQAMGKTS
QCPIEIPVNYAARGMAGPKKGPMKKSGKRKTMMLPTDDEQANTCFYCKGVHNDKNGSGPHFKKDCPMRKEDMAKGVGRKD
IFSEPRLLKVRKTDHARAQKVQPAPKRKEIPVDATVLQRLNINKPKANEDLPKEKAEKDQPKDEDEDEPMASDTAVTPTV
SPKSPVVSSSAESGSEDDIDEFDGKTVVPANSVKVTAAAEELEEKAKAFEDTVSRLYSFLLVPITELTGNSWVLDTGCGY
GLTASESVFVTKQPNSDYVFTFGQGSKLRNTFVGTVKLFLMSPTGVKSVQFSDIALVPHAKSNILSEFWLKRAGYQIVAS
NSGLYKFILWKHKLIFVAKSFNGAYYVQACTTKERQRMCNAVPIKPLTMPILTKIxSLMREWHVRLGHVNKDKLIEIMSN
QLVKGIPYIEGSKLRRINFFCSTCAEMKMRRMSYRNLKGSRDEQPISTIHMDTNGPMKTMGVYGTVGNHRYFLSITDDQT
SWRWTYVLRNKGEVNDKVKTLLLELEREGKFKFRRIRSDGGTEFVNQAFKSFCKSKGIKFQKSNAYCPEENGAAERDHQT
KMSKVRCALKDAEMADRWWPEALMYMTYVQNRMPMSRLGNKTPYEMVHGKPPDISDLHIWGSICFAHVPKERRQDKKLSA
RGIKCRFLGISDEYKSYRLLDVYNNRSIYSRHVMFDTQHGADIVLRAFGKEQNEENTDSTPPMGEAAPGSGPTRAVGEPD
TEQVSDQTVGAHKQKRGLVEAVGAKPAKRSRRETRKPAKFGDYVCYQTHMDKVNGLEILQNKIPIPRNLKGALRGPHRKE
WRRALDLEYDSLIDNGTWKLVKLPPGRKTLPCHWVLVVKYHADGVIERFKARLVAQGNHQEFGVDVDEVYAPVARFESLR
LVLAIGTILDCYIHQMDVHTAFLNGTMDETSAYMRQPPGYHAPGKEGYVCELRKSIYGLKQAPRIWYQVLHKVLTSMGFV
RCDKEFCIYVQKVGDDWVIIVVYVDDLTIMSKSMRLINKVKAELSMRFKMKDLGDVHYILKMEVRRNREERTMSISQHQY
ILELLKKYNIENSSAVATPQITGLELEPETKMTADEIAVQNFDYRGLVGSQQYLVRGTRPDIANAVRELSKYLSCYNKTH
WEAARRVLKYLKGTSTYGLLLDGKSKDVTYEVYTDASFACQSKERKSITGYVIKMAGCSISWCNSKQGCVSLSTAEAELI
ALSEGAKESEWLWNLLSEMGFPQAKPVQVWCDSRSAISITTNPGNHKASKHIEIKYLFTRDLVDEGRLIIVYCPTASMAA
DILTKALPTTQFTFLRDKIGVKSVLPAVNT
>Copia-9_MLP#LTR/Copia 120-4041 via tfasty with Copia-9_SMo, 60.9% SW:1589, 1 frameshift and 3 stopcodons. [Melampsora larici-populina]
MSDETPSRERSGIPLLKSDNFAVWEFKMKTxLRVLKVLNIVEGNEAAPDPITDAWNDRINLALSEIVTKLDDANTSHVFE
HVNDPAAMWMALTSLHALSSPANKAKIFGQFYALSCPTSGDLKTFLSEVRLVDQQLTRIGFKVDSEVLAYFTLFKLPQEL
DSVRSALLFGGKEVTLKFVLDSLDQTSTTASTPTITVKTESALAAVPEHSPAASRPRCTHCKRMGHLVDTCYRLKPHLNP
CNSLASVAEQVYTVSKSTSSNLTILDSGTTSHMFNILSLLQNPQPCNIKVGIGESGRFMTATHMGTVSAVACSGSLQLGQ
ALFIPELSRNLLCYNRFFEKGYYICPSTPGRFNPTNGSHILINGTVNNHLFYPDITFSSSGTLGSVSFIAHGIKTSTSLW
HNRLGHPSPSYLSSILSLVGAGPSDEAVCATCATSKAHRLPFSGNLPRPLAPLDVVHSDLSGMITPPTISGFRYYMKITD
GFTSYRHIFLLRSKDEAFSQFQLYANNVETFHSRKIKKLVSDGGGEYVNKSFSTWLSKKGITHQVTAPYTPEQNGVSERG
NTITVERARCLLSTAGMPSNLWGEAVTTAIYLENRLPSKSTNFSTPYELWHGRVASYSHIRTFGCAAFVHLPKFKREGKF
GPTAQRGVLLGFCEGTxNFRVIDPTSMKITVSHDVSFDESSFPFSTLCHNPDLNSISELFEEDQSPSIDTSKPPQRLVLR
IGPPPATIPLPDSPTTESTTYETAESNPSTAAPVSPPSPCPVRNxQPPERYGEFGALAFNAEIIPPGEPVTYRQALASAD
CHQWKSAMDQELQSLDECKTWSLIKLPPGKHSIGSKWVFKIKYKSDGSIDRFKARFVAKGFSQVPGLDFGETYAPIPGQL
STLRLLIAICIVFGWDFDQMDVVTAFLNGLLDKEIYMDPPPGLPNSEGLKCRLHRTLYGLKQSPNRWYHRIYTWMLSMGF
VVSEHDPCLFIRAKPVSPCFVYIHVDDLAIFGKNITWFKDAIKKEFKMVDHGPAHFLLAMRITRTPDSISLCQDWYILSL
LELFGMTECRPVSTPFVPDTHLVPATQSEIDELNALGVSYRGIVGCLGYLVQCTRPELAYPCSILGQFLENPGITHWMAA
KHVLRYLSGTRLVGLTFRNKPSSLNIIGYSDSDWAACRFSRQSMCGYTFIICGGTISWRAKKQVSVASSSTEAEYRGLLD
AGKEALWLRGLYQSIIPSNSTDPNILFCDNQAAIALTKSSAFRANTKHIEAHFHWIRDQVSSGLISIPYCPTGEMAADIF
TKALDRVKLVRFCAMMGIGPCVAPSAK
>Copia-9_CQ#LTR/Copia 74-4009 via tfasty with Copia-2_CQ, 1 stopcodon. [Culex quinquefasciatus]
MSEDAVVREDRYHVALFDGRNFAAWKYRVLVLLEEYELDDCILHEVGELPELIPKTEDSTTVSAEKEKRRKEQLKRRRKC
KRLLIERIHDSQLxYVQDKQSPKEIWTTLKNVFERKSVASRMHLQRQILSMRFDGGRLTDHFLRFDKLVREFRGTGAVMD
DIDAVCHLLLTLGSAFATVVTSIETMAEENLSMEFVKCRLLDEETKQKGLGVDSLTAGNEAAAFSGMKMQKKIRCFSCKK
EGHKSVDCTEKKKRKQQYNQKQHGAKANVAGTSERNSVCFVGVSGGEPQKVQRRVKWFLDSGASDHLAREKELFVKLHKL
SKPIEIAVAKDGEFIVAEHAGTVKMFSVVGGRSVECTVKDVLFVPQLRYNLFSVVRIEKAGMRVVFDGGKALIYRGDEIV
VCGARRDKLYELDFRPFDCEKSLLSCGRVQSDSVLWHRRFGHLNERSLTDLARNDMVSGLTLTVDKGVDQTIVCQSCIED
DWSHFTVVFLMRSKDEVLGCFEQYEALATAKFQTKVSRLRCDNGGEYTGRRFKQFCRTKGIQIEFTVPYTPEQNGTSERM
NRTLVEKARTMLLDSGLDKRFWGQAVRTAAYLLNRSPTSAVVYKQTPFELWEKKKPDVSKLRVFGCETFVHVPKELRKKL
DPKSWRGFLVGYAANGYLVWDPVNKRIVTARDVDFVETKTTVKKNDQHEVEQFVVCPIPDEAEEPVAPVAPAEREGEEEV
TSDEEFGSFDDDEEADGDQEELDAGGVPAAKEGPVGEDPEVGADADPGRPPRDRTAPSWHRDYDMDYAGFALCATSFLDN
IPQTIAELKKRDDWCRWKSAIDEEIDSLGRNKTWTLTKLPAGRTPVTCKWVFCVKRGDGVVADKYKARLVARGFSQKVGF
DYTETYSPVAKLDTLRLVLALAHRQEMHVHQMDVKTAFLNGILHEEIYMTQPDGFQQGKDLVCRLHRSLYGLKQASRAWN
ERFDEFIQKLKFVRSPNDQCLYVRGTGREQIIVVLYVDDILVVGSSLKLVKVVKKCLNGEFEMTDAGEVGQFLGLTIDRQ
PGVMRISQRRYFESLLQRFGMMECKPTSTPMENRLQLEKGVEAQRTTKPYRELIGCLMYAALTTRPDLSAAVNYFSQFQA
CPNDEHWIHLKRVLRYVKGTLDVGLVYRIEKEAPLLEVFCDADWANDLVDRRSVTGCIFKLYGCTVNWITRKQPTVSLSS
TEAELAALCTAACHTLWMVRVLRDLGLQPDGPISLHEDNQSTIRIAEDARDHGRLKHIDTKFHFLRDLINEGVLELKFVR
SSAQQADMMTKGLPATSFRELCTKIGLGRCCG
>Copia-9_SMo#LTR/Copia 275-4531  [Selaginella moellendorffii]
MATSTPPRTTSRTTLASTMAIPAGNWDAGWEKLLQKFTGENFTTWKTKVQLILMAKDCWDLVEGTEVRPQDTEAALQATW
DSKNHKALSVIGLGLGDEFIHLLDLEKSAKANWDSLSQVFAAKAANAKLVLTQKFFSLRMQPGETMATYIGKLKGLMQQL
KEVGAAVSDDYAKAFLLYSVSPELQQSSSMLSFVPGKTMEELYSDLLEEERKIAERQAGHQGSPQAAREQALFLGKKQSS
GEQRKGGTSRGPRISSATTPSSGSNFSKKKKGPCNYCGKMGHVERECRAKKAATQRMLTQSNSLLMMALYPSPVSALEVL
WLDSGASFHMTPLRSAFHTYKALQAPQQVYVGDKRPLQVEGRGMVVIRLPNGPLKEVHHVHFVPEAGQTVLSIGAASDQG
FTTTFFPKGCTIYGRDGTPVASGVRYETLYRLNAELVFPAQVLAFRAQDTIELWHARLGHVNERDLHALARNQHAKGITL
PAGHLGVCETCHLGKQVCLPFPSRTMEDQATGLLDLVHSDVCYLPVETLSRKRYFVSFIDDHSRYAVVSLLHAKSEVFNH
FKLFKSWAETSTGRKIRVLRTDGGGEYLNREFLNFLAEAGIVHQYTTAHTPQQNGVAERLNRTLLETVRCLLQHAGIPNS
FWGEAINTAVYIRNRLPTRSTGVVPYQAWTGKRPQLGHLRVFGCTAYARIPDATRQKLDPRSQKTIFVGYHAHSKAYRLY
NLALKKLVVSRDVSFNEQELYRHIQGTIPSSSNLVDLTPVLEDELTHPPAPAVQRLLVPEGGTPPPLGDEPSPATPLLPV
PLVTSVATSSNTTSSSEQNLAATVDELFVGEETVGGSSRSPPPDSLMTPPPRQEIGAVTRSGRVSKPTVKALESLAQAPR
KKGFYWAMSSIAEPHGYQAALSSPDASQWQAAMQDEYDSLIKNGTWTLVPLPPGRKAVTAKWLFKKKYRADGSIERYKAR
FVARGFSQIQGVDYSETYSPVVKLTTIHVLMSLAAELDLELHQLDVRTAFLNGDLEEEVYVAQPPGFIRPGQEHLVCRLH
KALYGLKQSPRSWYTKINSFLTSLGFTRSTADNNLYIYRDGQGFLFLALYVDDTILASNQMRLIHRIKASLAAKFEMTDL
GNLHYCLGIQVCRDRQRGVLELSQEKYIHDILQRYSMLNANPVATPMEAGSKLSKAFSLTSTSDDTPEEETTTLYRSVVG
SLIYLMVSTRPDLAFSVGAVSKFLDNPSPSHWAAVKRIMRYVSGTRKFTLKYARGDGDNGLVGFTDADWAGDPDDRRSTS
GYVFMYNHNVVSWCSRRQQITAMSSCESEYIAAAAAAKEAIWLKTLLQDLGIQIPAVKLYCDNMSAIALTRDARFHSRTK
HIELRFHFIRDQVNNGTINLEFCPTSSMVADILTKSLPRVKHELFLKSLRLTDGASLEE
>Copia-10_DPu#LTR/Copia 933-5326 via tfasty with TTO1_NT, 2 frameshifts and 9 stopcodons. [Daphnia pulex]
EGVVRNANLIDQWKQKDVEARTFIYSTMKPEKQTTLQGCATAFEMWSRILTEYAQVSAESEPLLWGQFYSYKFQPGTKQL
VxKSITWYKRILLLSFSDQTIMNFIAGIEQIAAQLRDIGAAVDETQIIAKILVSLPSSLQYFLPAWDSTSQELKTLSFLT
KRLVKEEISQARNQEKKVEPTDSAMKSDSMDRTQKAEGSTHHAYPAGSYPGLRGGQRGRGAYRGRGGYHQRGGYHQRGGY
HPYSFGNREQNSTSFRGGHEQPPTECFHCGEPGHIKRKCRLWLKVLENQKKRNQADNQQSYSYKSSTSFSTRKxxTTQLx
INSQENYNFFSFxRATDWFADSGATQHMTDQRNLLINFVPAEPGQWNVSGIGDTTLPVIGQGDVQITSVVNGKHMEGLKL
TIxKLNKPRYDxIIFCVGLMRGVLLVNGLGANLYSIGTATATGIEVLFTNDTVSFTRNGIALIEGRRAGKTLYHLNIQAR
NHTPKITTALRATKLLPLSIWHRRFGHVNNRTLLKMASLGCTNGLALFNDDISTFCEGCVMGKMQRLPFKLGHEKATVPG
QRIHSDICGPIQVTTPSGNRYFATFKDDYSNYCTTNLLKKKSEVTTALQNFVAKVKMQIHKDVKCIRSDNGGEYLNGELQ
KWLNDEGISHERSVPYTPQQNGVAERTNRTLMEAARSMLYEKKVPLELWGEAVMCATHIQNRKISGTNDVTPFELWTGSR
PDVSYLRVFGSPAFVHIPDETRRKLDPKAVECLLVGYCEHSKAFRMWNPVTRKIIISRDVIFREDATYESGPINQTDYDS
LFPLDEVTVVNISFWPILxTWxLHALLFLGTRSCTRKIKSDVNDQKSAKPQPTVIEKIVEQQTENSGMEETMQEPEQIEV
DDDPGPNQETDGREANIEDPFFGFHEERRRSTRIAKMKELKRTHECLAGESWKEITASQKVPKSYQEAMISEDAESWEPA
IQEEFLSLMENKTWELTPLPEGRETIENKWVFDIKPGYKDTPPRFKARLVAKGFTQKYGVDYEETFAPVLKHSALRTVFG
LIASLDLETVLLDVKTAFLYGELDEEIYMSQPEGFVVPGREMEVCKLLKSLYGLKQAPRAWNNRFNDFLIKFGLVRSDAD
PCIYYHHQGEEFTILCLFVDDGLICSNQAGSLSRIIKHLEEQFQIRTMDAERFLGVEISRNRKKKELTAAQPLFTLALLK
KFRMENCHPKPVPADPHTHLSTEMSPKNEKEKGDMEKIPYREAVGSLLYLAMTTRPDIAFAVGQVSQFCQNPGNGHWNAV
KRIFAYLAGTPYHGLHFKSSNHPAMKGYTDADFARDQDTRRSTTGYIFLYHGGPVVWASRRQKCISLSTTEAEYVAGCET
SKEAVWIDRLLKEIGQDQTLPIPLLCDNQSAIRLAKNPEFHQRTKHIQIKYHFIREQLKNGIIDLQYVSTEDQLADILTK
PLETNRFQKLREKMGIIDVRGSSA
>Copia-9_TA_p4#LTR/Copia 8486-11832 via tfasty with Maximus_p4, 67.2% SW:1726, 1 frameshift. [Triticum aestivum]
MKKFAVTPPCSRPPLAPGQEADPTSIKRGEDFPEEWAKRQAKLAKQAKDAVRKFNEDSTAAAAEASVRPKKSMAKKPAHK
PSASSSMPSRPSASAKPSRPIPHAAPPKSSAAPTKSSAPVHLATCQRTTGISIASGASASSSAAPNSSTGPSLLKTKTTA
GRGSRPSPHKKQVAFQVSSEEDEADDEELAELIRDRQVRAARAKGTNVPLLLDPKLILDYIDLWHKDPNTLMPDFKLTPG
QSHMLTAFFQEEKWKFEKAGQLKKAQYRKEKFLKTNVVSMTTDELVKIQSEIKVLSDDFNAYYADWKGAKVRFVKLTKMF
TSNVAAPSQQEIPQAEAFAQPTEEHASTADDNQAAEENVSSRADDCIPAADEIARASTSDAPEENEEVRATASVVPEENQ
PHSYAPPAPTPTPILPSASDVKKTKAAERAAVKKRKASAPSDSSAPKKMKKSTSSFANPIDAVPISSMPSKEIVPFDEEY
VIPSGSDEENPSAASSEQMDEEIEVDKIPSTPTVSSPMPQFTAEEAGVEEMEDEDVDIGCTTPVMNDDFWESQHPNSPLF
TPLQQIPQSPTTTVQMGSDEAHEHIPAASAEENENEELKNQTATEEEPEIPQPEEPEIAIPEVVMQLTDTRLPKPKDPFS
RKQKFKADDLFGEHIFFTDYNPYDSARIRKRRFWTASQANFYSSVLFNKDKVFDHEHIPHVDMESLPCFRPVLSVLYDAG
LLNFCTDICDWNEELILQFYATLHITGDSEDVNSWVLDWMSENTHYKAPATELLRALPISPPLEGACCVYSEPELTDHYM
QVLMKPLKPGQAPRTKFLVKELLYVPRTVYRILTKTLSPIKGHDSTEEEVVGIMKNLLFNIIHGVPVNFHDFFMRTLANV
AMSPFELKPYAPWIMRFIKTRSSLNYKADTLNHCSYLPPIEVLKRTFSSADEKGKATAVIDEGIRPLDGQFARPASYSTN
DDSATHDSAANAPKQNPQGTAPRVMTDRELLLSLHQKVDRNHKWVKRQFGSILHNMTATHNAVKKNHYYLHETLNRTWAI
LSHIYGEEDLKKMGLKEDFDWSAPPPKKYKKVKVPSLVASSYSSSRDTDEHEDLDDTAAGPTTTNDPNNADAPSSP
>DIRS-3_NV_pol#LTR/DIRS 301-3294 [Nematostella vectensis]
AFFSQALLPSRQSAKEGRDEQTEAVNKTIPEVSRAPAICFENDSFHLVPVDQFKAGRLQEFLPEWQEITSDSAILDSVLH
SHIDLVSDLELNCQQGTREIYHTNSVEAAIIDSELAKLLEKGIIEVCMHCPGEFISPIFIRPKKDGTHRVILNLKTFNEN
VEYHHFKMESIKSVITLIRPNCFMSSVDLKDAYHSVPIAVEHRKYLRFKWKNTLFQYTCFPNGLAWCPRKFTKLLKHVYS
ELRQQGFVNVAYIDDSYLQGATQLECWNNVKETVSLFQRLGFIIHPEKSVFIPTQEIDFLGFTINSVTMTVKITKAKALN
LQSECQKMLRKSQHILIRDLAHIIGLMVASTPGVEMGMLFYRSLENEKIDHLKLNKGNFDAECQLSDTCKSDLEWWATHI
LNSEKQISHGNPDMTLRTDASKKGWGAELGNKRTGGRWLFVETSCSINDLETQAIFFALKSLCKDVYNAHIRIESDNTTA
VCYVNNMGGSKSRSCNAIAREIWLWAIEHKIWLSAAHLPGKDNVAADQESRLFNDKTEWQLHHTVFTEINSLWGPMKVDL
FASRLNKQLSTYVSWRPDPEATFVDAFSISWANRIFYAFPPFCLISRCLQKVAEEEAQGVILVPVWPTQTFFPILLNMLI
DHPRVLPKRDDLLILPHSMEQHPLKPKLRLMACYVSGSAYKQKAFQMKLRRLFLSHGEREQRSNMQHILKKWEHFCSERQ
IDRTEVSVENALAFLTSLYNSGLKYSAINTARSALSCLDCGSRITIGNHPLISRFMKGVFECRPTESRYAFVWDVQPVLN
FLRQWVANEELSLKELSLKTVMLLALVTAQRVQSLHLLDISSMERRADCIVFKLGLLKQSRPTVKSTFIELTKYPSEEKL
CAVRTLEAYLARTKPLRGSETKLFITHSKPHHAVSADTLRRWIKSCMEQAGIDTVAFGAHSTRAASTSAARKGGVHVTDI
LAKAGWSSERTFGKHYNMPVVSDNDYVKAVLSVSNDS
>Gypsy2_CB_gag#LTR/Gypsy 442-1995  [Caenorhabditis briggsae]
MTEQIIFEVATAMNTVASVKQCVVSDLQSVHQKIQEIASLSIDRLEAVEDRVAENTDRINTLFANRADNSGTPSTHNSAQ
TSHPPSRRASPTPPNEILGSSINVLGLKIGSRIPIFSGAPAENFSTFVRSFMDHVKAVNPALEESSVRAVFLTYLTEFAR
DKAEELLEKHPSYTCQQLVEEMRKTFEDPNRAEMERQQLRQCSQRTDESVDDFCTRVRKLALSAHAGNSRDFIQEKAKEA
FIDGLLFNLKFLVKGESPTNFQEAQNSAMKFELLLKEAARSNTIAPQGLAVIPAPAPAQNSPWSKPKRECFYCGIPGHFA
RECRRKIADQAKGIFQKTNKVSNLRSQTRSFPQRNPVDNHQIFSNNPGVQAIQPVVSTIHAQMEAMQTELEVRQNQINAL
IKRNDELTTNPGNHQVPNRRVSCLRWSQTYLLILITFMSLFTQVAAISPLVCMPHTPQSYLRLPAPLDCSRATGHEPHPV
TQKELTIFRPNTIAYEANGTLCKIVKRITKYSVNFSE
>Gypsy2_AO_pol#LTR/Gypsy 1169-4906  [Aspergillus oryzae]
ELRPLELLVLRHPKEPTAFPILGTVELQLQESPSISADIKPIGGWDHTVQTVKALLDSGADDNFISYRYLLQHGITVSKD
HLQPPVRVRYADGTPAPCYGKLIVKSQVTDWENQTRGYEMEYYITDLQDPDYQIVLGRKWMRHADPDVVFSAGTWRYRKE
APKISIENPKRFAKTMRHTLTMMVMYRPDTDDGPPELPPRYRKWAHVFSEKEAAELPDEKAAHPIPLVEGGVPPYGPLYN
LSQHELQVLREYLDKMLERGWIRHSTSAAGAPVLFVRKPDGSLRLCVDYRGLNAVTVKNRYPLPRIDELMDRLVGAKYFT
KLDLRDAYHRIRIQKGDEWKTAFRTRYGHFEYTVMPFGLCNAPATFQAYINEAMKGILDDYCVVYLDDILIYSQTEEEHV
RHVGEVLSRLERANLYAKLSKCNFHQEEVTFLGFIVGRDGIRVDPERVRTVGEWPALESFHDIQVFLGFTGYFRRFVHQY
ARITKPLSDMLKGMQKGRKTGPFILTTEAREAFDELKAAFSGPPILRHFDPALRIKLITDASGFAIAGILLQPVDGVEEP
RRRSDWQPVAFYSRKLTEIEGRYPVHDQELLAIVECFKVWRHYLEGAPHAIRVQSDHESLQYFYSKKTVKLDKRQARWAE
LLAAYDFQIEYRPGHLNPADAPSRRKDYEDVHVQRNVGLLPTLQRKLRAVPDDRNDVGAPSVAESEISIVSSRGPELLAL
RTMAREVAREEVVCEATSHPLRDAILQAQQGDAFVGQIRGKLLPGEGKKESGHKSDVAETSGDLTGRWRVDGGLLYRGET
IYVPPCSALRQEILRVHHDDPFAGHFGREKTLELIRRKFYWDGLRTDIENYVRDCPVCQKMKVPRKLPQGELASLPVPEG
PWQDLTMDFVVGLPPSGRKGRVYDAILVVVDRYTKAARYLPTTGTVTAEELANMFLDEIVCKTGSPRSLVTDRGSLFTSA
YWMQFCQGLRIKGRLSTAFHPQTDGQTERQNQTLEAYLRMYTNYQQSDWADWLPTAEFAYNNAKNASTGYSPFMAWQGME
PAVPGLEAIGPTTSNASVELRLKGLADIRTKLEENLKKATERQAEGYNKRHKATQLRVGQEVLLSTKNIKSWRPNKKLDL
KYDGPFMITEAVGKQAYRLRLPKAYGHIHPVFHVSLLKPYHRRAGVEAGEAQPIVIDDQEEWEVEEVLAHRVYYRKLQYL
VKWKGWPSYENSWEPEENLKNAAETVAAYRKASEVPEAPRRSRRRA
>Gypsy2_env#LTR/Gypsy 4734-6132 via tfasty with Gypsy6_env, 4 frameshifts and 1 stopcodon.  [Drosophila fruit fly genus]
HRTNLILLVSLSLASAHITDYSRAKYIPIVDGQILVWENFAYVRHSANLSEYARVVEETVGLLSHFPQSHMRNLLNVDSA
HLRDLLDALGAHHRRSLDFLGSILKVVAGTPDASDLQNSRVIEAQLIDANNRQIEINTKIQSQINKLTATVNLILKTAKA
SQIDSGHLYETLLARNRMLMMELQNLMLAVTLAKMNIVSPNILDHADLSSVWLEEPTNTPIGDLMSVSSVKVLQSNNAxH
FIIKFPIIKFACKKITIFPVSHEGAMLRLDDGIIAECDNEIHTVKACTASTSATFCQLSSGSSCAKELHAGGEAHCEIQP
SSLDPISYVDEGIVIINDRAAKVQVDNGSENWVHSTHLVTFARRAVINGTLYVNQNGIQNRVPGVPKFPLLNITSHQSVL
SLPYLRRLNERPERPQRVALTVAASCCLLLCVAIVGWRAWKAKRSARQLNVAIAELRSASVLRGGGG
>Gypsy3_MT_gag#LTR/Gypsy 2565-6011  [Medicago truncatula]
MDYLEQENRVLREEMTAMQTRMDEMAELIKTMAEXQTQAQAQIQAQAQALAQAQTQAQAXTEAQARSQAPPPPPPVRTQA
EASSSWTLCADTPTQSAPQRSXPWFPPFTAGEIFRPITCEAQMPTHQYTAQVPLPAMRVTPATMTYSAPVIHTIPQTEXP
IFHSGNXEAYXEVSDLREKYDELRRDMKALXEKGKFGKTAYDLCLVPSVQVPHKFKIPDFEKYKGSSXPEEHLKMYVRRM
PAYAQDDQILIYYFQESLTGPASKWYTNLDKTRVQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKXTFKEXAQRWR
DTAAQVSPRIEEKEMTKLFLKTXNHFXYKKMVGSTPKSFAEMVGMGVQLEEGVREGRLVKNTTPASGTKKTGNHFPRKKE
QEVGMVTHGXPQQTYPAYQHIAAITPTSHPFQQTNNHPQIPQYPQXPQYPQIPQYPQFPQNPSPQNXQQQNXQQQXFQQQ
PYQQYPYQQYPQQNFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPEKLPSWYRLDQTCDFHE
GGRGHNIETCYAFKSXVQRLINDGKITFTDSAPNVQTNPLPNHGAATVNMIEDCQKTRPILNVQHIRTPLVPLHAKLCKV
DLFEHDHDLCEICLMNSGGCQKVRNDIQGLLDRGELVVERKCDDVCVITPEGPLEVFXDSRKSTITPLVICLPGPLPYAS
EKAIPYKYNATMIEEGREVPIPPLSSVDNIVEDSRVLRNGRVVPIVFPKKIDATINKEXRTKDAGXAKEVDQPNGAGTSA
EFDEILKLIKKSEYKVVDQLMQTPSKISIMSLLLNSEAHKDALMKVLEQAFVDYDVTVGQFGGIVGXITACNNLSFSDEE
LPAEGRNXNRALHISVNCKTDALSNVLVDTGSSLXVLSKTTYTXLAYQGAPLRRSGVMVKAFDGSRKDVLGEVXLPITVG
PXVFQVNFQVMDIQASYSCXLGRPWIHEAGAVTSTLHQKXKFVKNGKLVTVNGEEALLVSHLSSFSFIGADDVEGTPFQG
FTIEDKNTKRNEASISSLKDAQKVIQAGGSTSWGKLIELPENKHREGLGFFPSTGLSTAKXGTFHSSGFIHAIIEDDPES
VPRGFITPGVSSHNWVAVDVPFVAHLSK
>Gypsy2_TP_pol#LTR/Gypsy 1231-4812 [Thalassiosira]
LQQRTADGLHAESYDLMQQDEESEEISNNIKSIVEHVNEVDDTNLSTFPETDCDASKDGDASAGIANGDASDNGEDDIGM
IDMLAFEPIIYQVPTPKQLQSQSKDIVPATLMIAQKVQGQQCPRLLKVLLDSGGGATLFHRSCLPRGATPRMLPEKKEMK
TILGTFTPNNEVLLEDIQLPEFDKSRKVDFVNAFIFDEPCRYDVILGRDFLSKAGITICFKSNVMTWLENVVPMRCPTTD
KETLEAVLDACYMHDEEYELEIDWLDGYLSNPIPILDAKYEKADIDEVTTMQKHLTKEQQRELATLLRKHEKLFNGTLGL
YPHKKVHIDVEPNAKPVHSRAYPIPRVQLETFKRELMHLVRIGVLSPQGASEWASPSFIIPKKDGRVRWISDLRALNKVI
KRKQYPLPIITEIIRRRTGYSFFTKLDISMQYYTFELDDESKELCTIVTPFGKFKYNRLPMGLKCSPDIAQEAMDNLFRD
IDEAEVYIDDVGAFSNTWAQHIDLLDTILGRLEDNGFTINPLKCEWGIKETDWLGYWLTPHGVKPWKKKIQGILDMQRPT
TLKEMRTFLGAVNYYRDLWPRRAHILKPLTDRVGKKEFIWTPEMEKSFKTMKAVVAADALMHYPNHNLPFEIYTDASDYQ
LGACIMQNKAPVVYFSRKLTGAQRNYTTMEKELLSVVMVCKEYRSMLLGADLHFFTDHKNLTYHNLNSQRVLRWRCYLEE
YSPNFHYLPGKDNVLADAFSRLPCLHDEGVEGKSNDELDDLGTEELHSQFRAKRNDNVESFASLLDEPSVFDCFVNLPQI
PQQQNPLNYAVLQQNQIADAQLQTLLRDNPQRYQLRDFGDVQLICYVKDGDDPLTQWKIALPENMIQHTMIWFHHVIGHP
GNNRLRDTIQARYYHPSLRKKIDEFQCGICEQHKLSGAGYGYLPEREARLAPWTEVAIDLIGPWKLELNGREYEFNALTC
IDTVTNLVELIRVDKKTASHIRSKFEQVWLARYPWPQRCVHDNGGEFVGASFQELLEAANIRDVPTSSRNPQSNAICERM
HQTVGNILRTLIYSNPPQTEEQAANLVDEALATTMHAMRSAVSRTLGSSPGALAFNRDMFLDVPLLADWHLLQQRREHLI
NENLRRQNMKRRRWDYVPGQRVWLKTVDPTKLGLRTIGPFFIEQVHTNGTITIERRRGVLERVNIRRVVPSRE
>Gypsy1_TP_p1#LTR/Gypsy  [Thalassiosira]
MSSSMNNPCVGYERGYTNADVNTAPTRKFIKYITDEDGNRDRKEAIIRMDDGTKTVEYAQRVTVRDVEYAATELEWSDNE
CYKHFPSVLEGYASTVWEEVLEELKDEDKAKANSFKSIAIPRFYKKLGGDDRKQGDTILYYLEHKWKKPMSKTPQQHYHR
MVELLQIAEKLNKSQPTPNXENKKLLFFHAMPLEWQTAYKSMGRSLDDEDLLGRVLPFMTSMHEKELKLQAAKKKVSFKA
NEKRNEQEKKRPATQQSNSNKRTTADGQKYGGTKQCLKHPGHKHTWNECFDNPKGTNYKPKTDNKSGKPAKKSTDSGDAK
INDEVSSDSLFSNE
>Gyps1#LTR/Gypsy 282-4232  [Strongylocentrotus purpuratus]
MATNLSQPQPLELTGNLAENWKRFKQRFELYNVASGMSKTEEKAQTSMLLHVIGEEALDIYNTFQFEEDTGDEMKLEKVL
KKFENYCMPKRNVTFERHKFFTRSQHENETTDQYATELRNRAKSCDFGDLKDSLIRDRIICGIVNSMVRERLLRQDDLTL
DKTLQLCRSAETTRAQAKELSSTDEVLVDALGSRRKLFHGNQRQNPRQSLGQQQTQRPYRSQNQTQGQKSRNSCGRCGNW
HGQNACPAQGQICKKCGLGNHFAKCCKTPMSKVINEMQNLEVEDEFMVDVVETLESRDEWKVKLVVNSRPVIFKLDTGAQ
TNLLPESVYQSLIPRPKLHPARVRLTGYSGVVIPVKGRCYVQVEYKGLTHNMAVLVTPGDRQPLLGLQACEQLKLVKRVL
NVKTESKNVIVDDYEDVFEGLGCVPGKHHITLKENAQPVQHACRKIPFPLRNQLKDELDKMERLKVITPVDEPSDWVSSL
VVVMKKNNQLRVCLDPRDLNRSIKREHYQLPSREEITAQFAGAKYFSKLDASSGFWQIELDEESSRLCTFITPFGRYRFL
RLPFGVCSAPEVFHKVVHNLFAHIPGVNTMMDDIVVWGSTQQEHDTRLKQVLDIAQKANLKLNRDKCEFNVSQMTFIGDV
ISEQGVQPDPKKVAAILNMERPQNKQDVQRFLGMVNYQGKFIPDLSTKSAPLRSLLEKRNEWMWQDAQEKAWCQLKEALT
QEPVLHFYDSTKPTKLSADASKNGLGAVLLQQHDQNWFPIAYASRAMTDAETRYAQIEKELLAMTSACERFHQYIHGRQV
EVETDHKPLVPLFKKSLCDCPLRIQRLLIRVQRYDLKVSYTPGKYMYTADALSRAVDPQADMQVEREEDIRIYVDTIMET
LPVTSNRKSQFVDETQKDKTLQELIGIIKDGWPETKQQCPVAIRAYWNIRNELSEAEGLIMKGSRIVVPSTMKKQMLDKI
HEGHLGIEKCKRRAREVLYWPRINQDITEMVQNCNSCLMYKPKQQTESLKPHTVPNRPWEKIAADLFTLNNKDYMVIVDY
YSQFIEVCPLSTTTSKTVITKMKEVFSRQGTPSELVTDNGPQLASKEFKNFAQDWDFCHTTTSPYHPQSNGLAENAVKIV
KNLIRKCQDSRQDVYRALQVYRSSPLECGKSPAELLYNRRLRSNLPMVDKLLDPQHINPQQVRERKEGQKVKQKERYDKH
ARDLPELNIGQTVRLQNMHNNQWSQSGIVKVKLPNRSYLVETEYGEIRRRNRRHLRPAPTRRDDRFQQTTQTDSDPDDED
VSEPTPERSGVPAQQASSYMTTRSGRISKPPNRMDL
>DM297_pol#LTR/Gypsy 1693-4764 [Drosophila fruit fly genus]
MINENIFCLPIQNSRCEVLTSNGPITLNDLIMLPRNSIFKKTEPFYVHRFSNNYDMLIGRKLLKNAQSVINYKNDTVTLF
DQTYKLITSESERNQNLYIQRTPESIASSDQESIKKLDFSQFRLDHLNQEETFKLKGLLNKFRNLEYKEGEKLTFTNTIK
HVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIP
DRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLL
NKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPT
KDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASN
LALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWR
VRLSEYQFKIDYIKGKENSVADALSRIKIEENHHSEATQHSAEEDNSNLIHLTEKPINYFKKQIIFIKSDKNKVEHSKIF
GNSITTIQYDVMTLEKAKQILLDHFIHRNITIYIESDVDFEIVQRAHIEIVNTTYTKVIRSLFLLKNVGSYAEFKEIILQ
SHEKLLHPGIQKMTKLFKENHFFPNSQLLIQNIINECNICNLAKTEHRNTKMPLKITPNPEHCREKFVVDIYSSEGKHYI
SCIDIYSKFATLEQIKTKDWIECRNALMRIFNQLGKPKLLKADRDGAFSSLALKRWLEEEEVELQLNTAKNGVADVERLH
KTINEKIRIINSSDDEEVKLSKIETILYTYNQKIKHDTTGQRPAQIFLYAGHPILDTQKIKEKKIEKINEDRREFNIDTN
YRKGPLQKGKLENPFKPTKNVEQTDPDHYKITNRNRVTHYYKTQFKKQKKNNKLSISQAPGTR
>GypsOL#LTR/Gypsy 42-4538 (Gmr1 subgroup)  translation from BA000027 [Oryzias latipes]
MTRGKKTETPDLPLDDDKATSSHQEGAAAPDEPDKLEELTTLVKTLVQSQASRDKLVEKESARQDQRWKNLQHQFQMLQT
QVKELKDDFETRAEQEDDDDDDVGEGADDVQLAMPTSCGPVPPTQRGPILQKQPKILPLSPEDDIEHYLMTFERIATVCR
WPKEEWAIQLIPLLTGKARSAYVLMDFDDSEDYEKVKEVILAKYEITAETYRKRFRALDINPGETPRELYVRLRELFNKW
VKPEACTVKEISEKLILEQFLRMMNPEMEIWIRERDPQSAEEASRLAEVFLSARSGRGRPNFGRDSYFSGRSKSYAGERG
GQTHSRMHNSPRQFSAKAKESRRSFSSSKQNVRCYQCNEIGHTQYTCPATRQNPPSLLCTVPRPSQPVQVQKEVVTVPVL
INGQRKEALLDSGCFKSVVLESLVPRDLWNEATATIGCVHGDEKAYRTAEVYLTIDGQTYLMPVVLVPELPFSVILGRDV
PLLFDLIQQAHAKMDGGVCETSVQAQRKPVGSDHQHAVSLCNIVTTRANAARNLLEELPFHNTELEISPVKVRKSRAQRR
REKFLATVETQCDDEKQPSHVLDFQVPADIAALQRADPRLKVWFDKVSEIEGQKTGRVECLTDKIYLIKNGILYQRHGTV
EALALPQCFSKKVMGIGHSIPWAGHLAFQKSLNRIANRFVWPAMYTQLKEFCASCEICQLTAPQGVARAPLQPLPLIETP
FDRIGMDIVGPLEKSSSGHKYILVICDYATRYPEAFPLRSVKARQIANCLIQLFSRVGIPKEILTDCGTNFLSKLLKQVY
SLLGVKGIKTTPYHPQTDGLVERFNQTLKTMLRKFVSETGADWDQWLPYLLFAYREVPQASTGFSPFELLYGRQVRGPLD
LLKDYWEKPVTDKDNVVSYVLKMRERLERMSTLAQEHMRSAQAQQKTWYDKKARDRIFQVGQQVLLLLPTSDNKLLARWQ
GPYSITKRLGEVTYELYMPEKLKKHQRFHVNLLKEFQLPASNKQECNQTLFIRVADDDEEEREKLFPHEEMASSPVDVSH
LQPDRQREVGRLLDAELFKETPGFTTLVQHKVHLKEDAVPRRRYYRIPERLVVKLEKEIELMLKLGVIEPSTSEWCSPVV
LVPKKDGSLRFCIDFRYLNAVSKIQSYPMPRIDELLERVGKSKFITTLDLSKGYWQVALAQETKELTAFTTPYGKFQFKV
MPFGLQGAPATFQRLMDEILRDFPQFAAAYLDDVIIFSHSWRDHMSHLRHVLHLIKAAGLTINPGKCVVAQQQVEYLGHV
VGQGLVKPRVGKVEAIQEYQIPTTKKKVRAFVGLVGWYSKFIPHFADRAAVLTDLTRASAPNKVVWTEDCDAAFRDLKGA
ITSESVLYSPDFTRPFILQTDASAVGLGAVLVQEAEGERHPVLFLSRKLLDRETRYSTVEKECLAMKWAIDSLRYYLLGR
HFCLETDHRALQWLRRMKDSNTRLTAWYLSLQAYDFTVQYRAGKTNCVADCLSRVHEN
>Gypsy1_MG_pol#LTR/Gypsy 1044-5210 [Magnaporthe grisea]
MGGRGDAVDPDKPSLRTPTEGTRVHAPNGSPATNISGDAKQGRACAAVIPAIKWRIAPTQRRCALPRWWPRLRRRPLERE
TSSPRHETQSRAEAQGATEARADRGPGSEHGEIGLIRRSMDGAPFLIPALLDNSQFVNAQVDSGCECYAAMSDKCATRLR
IERIPLPQARHVGTAVGRAQPMIRELAKCEMDVDGWVTPMLFYIVPGLARDVILGLPWMTHRRISLDAARKKLVVGAARG
MLVDESSTRPVSTKPTVVIGNVFLAACRRAKRHDGEQMEFASTSLREMTSILQLTATYEQALPQATLPPELAKFADLFDK
TKASGLPPHRGHLDHHIRLQKDESGKTPALPWGRLYHMPREQLLELRRQIVDMMDKGWIRASSSSAAAPVLMVRKASGGW
RLCVDYRALNSITMQDRYPLPLIKETIRSLTGARWFTKVDVRAAFHKLRIAEGDEHLTAFRTRFGLFEWLVCPFGLAGAP
ATFQRYVNGVLGDTLGDYASAYLDDILIYSSGSKSDHWSKVTRVLDKLAAAGLNLDLDKSAFAVKEVKYLGFIVKAGEGV
QADPEKIKAIRDWEAPTRLRGLRGFLGFANFYRDFIDGYSTLTAPLLALTKKGTPFRWTEELEGAFEALKHAFLQAPILA
QWDDAKDTRMETDCSGAALGGCLSQKGTDGLWRPVAFHSAKLTDAQRNYTIHDKELLAVIACLKAWDAELRSVRRPFLIL
TDHKALEYFSKPREVSERQMRWAETLSKFNYNLRFRPGRLAGVPDALSRREQDECTTPRLTTVLRPARPRTNLAPANTIP
TATAAAPPPGSQVFAQAHLARLWDEALSKDDLYQIRLDAVQGDERRFPPEAETKAQVADCAVNRLGALQYRGRLWLPNWE
PLTTAVLQRTHESPMVGHSGRDGTFAILARDYHWDGMAEHVRRFVRNCDICRRTKPSRRARQGLLQPLPIPDRFWKQISI
DFMTDLPGNGEVTPRYLMVITDRLSKYVQLEAMHSMKAEDCAARFLSSWWRFRGFPSQIISDRGSDWVGGFWTELCRQTG
VEQLLSTSYHPETDGGTERANQEVQQYLRAYIAFDQGDWPDHLGAAQLALNNRNSSVTGTSPNKLLLGFDIEAVPNAAPP
SKAPASSPKARATRFLEHLREGSELAQAAIAYNQQRQEAGANESRRPAERFRVGDEVFLNLRNIRTNRPCRKLDYIYGKY
RVVAVPTPLTVTLDVPRGIHPTFHVELVERAASDPLPSQIRTDSRPDPELQPTEETGEPEEVWAVEAILAAKNRRGRGGG
RQVLVKWQGYDNPTWEPLELMTDTRALDEFEARWGGVHTNDGPTSRRRRPTTTATQRFPTPSGPEGEEPTAAGQRRRSAR
LLRVSHMCTSEGGGMGKTLARNRTLQGR
>Gypsy1_CS_gag#LTR/Gypsy 88-897 gi|12958102|gb|AY013569.1| Clonorchis sinensis clone 4 LTR retrotransposon CsRn1 [Clonorchis sinensis]
MEAHFDSADLVENAISIRLPDYNPRNPRVWFHQVEAVFATRRITSQATRFSYVVQHLPCDVATEVEDLLEDIPKENPYDS
LRAAVISRTGKSENKMLRDLFTTVELGDRSPSQLLRHMRSLLCGRKLAVEIMAQLWLDKLPPSMSRVISAFVDDHSLEQL
AQMADKIHETYPSNPVNSVSRSAPTASTDSDPILASISQLQAKFDTLTDRLQRLEINKHRPRSRSRSLSRARPSWCWYHQ
TFGPQARKCQPPCSFKPRSNTPLNTPASQ
>Gypsy4_DR_gag#LTR/Gypsy 261-1871 [Danio rerio]
MATERRKLAWSIRRRLFALSNIQLFELAMNIATDNVDPVQFKQTDEESCMDYVTSYIQSDTLLQLEDEGLSQLLILSDEI
DQIIKKSSSTESSVSEVAEINTLATPIPHSSNMISDSPPSSDNALENIETQSIAELKRVYEELIEQMKQREATVPQPAAT
ISQPSQPQVSSRTHFTQERPATITDLSYLPRREFKLFGGQIGDNSSDISYNSLTKQINEGLKEGFTEAEVVRGVLRIVKP
GTFRDMLMLKDELSIFELQCFLRSHLGEKAVTEMFQELMCARQTEQESPQQFLYRMIGLKQKLIFQSKQANTDISYDPKT
IQEVFLHTVYQGLGVKYADLRQRLRPLTLNNNVADEEILREVTRIISDENEHQRRLGQVTRQKHLQAQSAVLETKETIPA
KGQNAAQTIQHLAAQVQTLTDMVASLMELKTANQHQFFPPPATQNPPYPNSSPFPQQQYSHTSQPPTNQHIAPSKKMFLC
QKCTELNLQDCSHCFVCGESGHRAVGCLKRTRTQGNGNRSLSRDSQRPAQTLCPSL
>Gypsy7_VC_pol#LTR/Gypsy 1500-6282 Genewise generated with Gypsy-1_CR_pol; 2 "introns:, 1 stopcodon [Volvox carteri]
SVCDACPRMRIDPTIFATIESRIGRTITFDACASDDGNTAVCKSFGSESRQFLSLDCSGHTLWLNPPIRKFYAYLRHYRR
CKEHDPSMAACTLVPETPGKFRTFLDGMTLIQTFPKGTRLYTASYPGCPEPPPLTEPLQLWYDSPSPEQRLNPSCCLTEK
DAYLDLFSGKLSETSVRILPDTGATHCFIAKALADRLGLALEPSPCAPVRLADASYASVAGECKTRLRIGRFRAEVRFLV
LPTLTTSADVVLGQNFLRRYRAELRPAEGSLKLRRPTGLSVTLRSENAPSPVTVSDVPSVTLLEKRPETIQIVSPKRAFR
DLNEAGCRSLLVVVKQTASLLSDTPTLNAVDLPPHIAENESLVEIINEFPKVFAPITELPPDRGVNHAIPLEPNAQPTFR
PQWRLSPLEREEVEKQVKDLLAKGFIRPSTSPFGAPILFVTKKTGELRMCIDYRALNKITIKNRYPLPRIDDTLDRLAGA
SIFTALDLASGYHQLRITPEDVPKTAFTTHLGHFEWLVLPFGLSNAPATFQNLMNRIFAPYLNRFVTVYLDDILIFSKTP
EEHARHLRVVLKVLEENQLHVKLSKCDFWKNEVQYLGHVVNAEGIRMDPKKVEIIRNWPLPKDISELRSFVGLANYFRRF
IAGFSSLAAPLTDLFSAKRLPDEWPEQAIRAFETLKARLLNDVLLNYPDFTKPFEVISDASLNGTGAVLLQNDRPVAFTS
KKFSPAERNYSTGEQELLGVINALREWRCYLQSSIPFNLVTDHHPLIFLKTQSTVSRRQARWLEFLAQFNFEWIYRPGRL
NVVADTLSRHPSLASVVVFNAVTTRRSQGLTLDPLIQRIADATKRDAHFQNPDHTHFFLTNPLGFFQIERGECEYRIVVP
NDPALKREIIERSHTNILSGHPGRDRTIDLVERNFWWPTLKADVAGGQVNVADFVACCDLCQRNKASSGKPLGLSRPLPI
PERPWSSVSMDFVLGLPSTRKGYNSLVVFVDRLTKMVHVRPCKKEIDAEETADLFFDTVVRLHGLPDAIVSDRDNKFTGA
FWTSLMKRLEVKQAMSTAFHPQTDGQTERVNRVLGDMLRNYCDQEPSRWETYLGPAEFAINNSKNRSTGVSPFFLNYGYH
PKTPVQLELGDAVPVAKGYVDTYAKRLAAAKSALMAAQDRMTKQENKGRRDVSFTEGQQVXLSTKNLTLQKGSKKLMPRW
IGPFPIEKMINPAAARLALPEEYRFHNVFHVHVSLLRPYRSDGTVQPPRPTVGIEPEGPTSVWTPERILDHDQRKLRNRT
LTRYLVKWVGHGHENNSWIEE
>Gypsy7_VC_gag#LTR/Gypsy 466-1320 [Volvox carteri]
MLAALQNHPEASDWINQYGESADSRPDRLTLDAIIEALNERFVDSVRSRPLEKSQMLLDGKIRMDAQKGVPEYAARFREA
ITIARMTDTPTILTLFRRGLILPLVAPCRVNFKGAEFENLNELIEHAIGEEKKLKETSKRPSLNYSYADLPLARNRLRND
LMVLTPGLKSQRNLDPNIELTTVPARLRLDRPRTMSTTGLGLRTLDRRRSRRDRCPRHGHRRYLRMPQRTLLRSGKMTSL
QPSGPFISCMASALIVVARDTSLRRAGSDVLPSCLVASRLGLAE
>Gypsy8_Dpse_gag#LTR/Gypsy 81-1412  [Drosophila pseudoobscura]
MGKGQWIHRLRKEELVQCGHAFGVRLEGTVDEMRRTFKEWMREHEDEAEWADLIEVWECRANRSSPTPRADDKQAAYEHL
APPPGAAAAALWRSPVDIQRELIASLSVPIPERSHTGTPSRPRHPGRDRSREAERERVEPATTRPAHLDYARVAKQVREW
SFRFDGTTKPLEFLEQVEWSAETYGLDPDLIPRAMPELLKGRALMWFVANNRQWRTWKEFSSSFQAYFLPRGYFEKLLQE
VRMRKQKWGEPFKEYMVEMQTLMRPLKCPQEEQTELIRENSMPDLRAYMRPHRCKDLDTMMELADEFEALERDRLEFQRE
NPTVKARAANPFHKPADTTACRRCKDGPLEEAAREERGAHGRLPTPTNGNIEDGYVKNPAQACRRCGSADHWSRECNGRP
LTYCWRCGKVGISAWQCCRKTGNAPRPTPRRAVPGSQETVPQA
>Gypsy9_AG_gag#LTR/Gypsy 890-2266 [Anopheles genus]
KQYEKGMITISDKIEILKYIFKKIQDPNQRTCTRTQLRIKAEETFKEIQNDIEKNRYKYTFNKLLEFSKISNALIQNIIA
MSTSKTNDDSRNKSSDFSTNSSEDKNINLTLLTTSRLSFKLLAQIIFVLLKLHKKIKMANFDIKTATGLVPTYDGSPDTF
NAFEDASTLLFELNPNHEEMLVKFIRTRLTGKARIGLPSNITTFNELISDIKRRCEEKTTPDKVIAKLKSIKTRDAQSIC
NEVELLSEKLKVIYLKQGIPEKIANDMAIKTGIDTLKEKVANSETKILLKAGTFATITDATQKVMENESEETNRTTNVLN
INTQRYNRNYPRNQGNQNRNNQNNYGPNTNQPYRNYYNNRNNNNFNNRNNNNSSYNNNLRNNIRYNNRFIQGYNNERYNS
NFNGNQNRPNKNLRAITNGETGQQQRNIYHTTAQIQEVEENNFLDQQESTQTLDQFTH
>Gypsy8_VC_gag#LTR/Gypsy 237-1601 Gypsy14_VC_gag [Volvox carteri]
MDPPTVTDSMNVDDVAVPPPNPPNPLNPPNLPNPPTLANPPRTTEPTRDAGGSAGPSRGEHELVELKLQLVQAEIELAKI
KNSGAGPSTAPVPVVSPDTTNLARTEPRFTFRIEPPQPSKSNSLEMFANDFQDWVAKYTPNNTDDALWQLRHAMREYPPG
ALDWLSEYRTESHNANKPIVLPELLTAFLDYFEPKVRDRETESLESLLKGEIRMDASKGIAEYAVRFREVARRAKFTVQK
PLAKLFYMGLIPELRPLCRADLRGAEFTDLDTIVQFALTEERRLQARGQGQSRAALHYAAAASTKTKHRFHGSRQDSSKL
SGKRNTEPQPWRDVVAKRARADRPPATEPTAVAGTATNVMNSVRPPARSVAPAGPLPPIPGPPVMVPPRPLNRPNEPSRT
PNPLRLGTFLTNWEKYQWMQQGKCYRCGIQNDHISSRCPNPLVTPEMFRRPENR
>Gypsy7_AG_pol#LTR/Gypsy 1757-4942 [Anopheles genus]
KFSLRRNFSRSRIKFFRLKSALPYFIYHGKAGQQIKILIDTGSNKNFINPLHAKISHDVIKPFFVSSVGGDLLITKYSQA
QIFAPYSDVNVKFYHLQGLKSFDAIIGYDTIKEMGAFVDAKRDNLVLENFIIPLSLHPLQEVNRIEIRDTHLNHQEKEKL
HLFLNKFQDLFQPPDEKLPFTTKVEATIATNDTEPIYCKSYPYPLSLKQEVETQIKKLLNNGIIRPSRSPYNSPVWIVPK
KVDASNEKKYRLVIDYRKINLKTKSDRYPIPDTSTVLANLGNNKYFTTLDLASGFHQIRLAEKDIEKTAFSINNGKYEFL
RLPFGLKNAPSIFQRVMDDVLREHIGKICHVYIDDIIVFGKTFDEHLKNLEIVLNTLREANFKIQPDKSEFLRTEVEFLG
FIVSEYGLKPNEKKIESILKYPEPQTIRELRSFLGLSGYYRRFVKNYAALAKPLTKLLRGEDGQGHCKITKNQSKNFPIK
LDDDAKRAFKTLKEVLSSDDVLAYPDFDHDFILTTDASDKAIGAVLSQNVNGVEKPITFISRTLSKTEENYATNEKEMLA
IVWALHSLRNYIYGAKIIILTDHQPLTYAMSPKNNNAKLKRWKAFIEEHNYELSYKPGKTNVVADALSRIQINSLTPTQH
SAEEDDLSFIPSTEAPINVFRNQLIFQKGTISSYEFVNPFPKFKRHTFIEPQFSIDFIKDKLKRFMIPGIINGIFTDEPT
MGIIQETFKNLFNISTMKARFSQTQVQDICDQEQQIEEIRKIHNFAHRNAKENSLQAIKKFYFPSMRNKIEQYVKNCETC
KVEKYERRPPEYIPVKTPIPKYPGEIVHVDIFAYNANFLFISSMDKFSKYLKLKPIKSKSIADVKEVLLQLLYDWNLPRQ
IIFDNECTFVSNVIEQSILNLGVSIFKTPVNRSESNGQVERCHSTIREIARCTKGLNPDMSLITLIQQAVYKYNNTIHSF
TKETPRKVYIGEQSEELSFRDRSKLKEKIESKIIKIFEEKNEKIKDDKYQDYEPNQFAYEKNKTMNKRDSRYKTVVVKEN
HPTYIIDSNNRKIHKINLRKN
>Gypsy5_Dmoj#LTR/Gypsy 184-3498 via tfasty with Invader6_gagpol, 1 stopcodon. [Drosophila mojavensis]
QHRNLLEVINAVKSGxNEQSTKKIIILPKFNPNVTGSSAAAWCAIADFILTENPLESSTLLMALSKSLDGDAAYWLSQIS
FAGMTWMQFKELFLQNFEGHETTAATIFNILNSGPNVDEGLASYGSRTVTSLVSKWKDVSIEEIAVSVVLAHAAKIEPKL
QRTIFTTNIKSRNEMRNELSAFDFGKRKSNSVPENSASKNMRLQPISKCHFCGKQGHKVADCRARRIPGNSQQNSTQRDT
RVLEKQRKSTIICFKCGEAGHIQSACPRGSSALVKNRVEEKRVNICHVKEPLGNLIQSGESYPFYFDSGAECSLVREAVS
RKFSGKRINNVVHLKGIGNNSISTMQILSNVIIDEYSLEVVFHVVLNEYLNYDIILGREILCNGFSVTISNEKVELLKSK
SICAVAVSDNLVDLTTVDSGVSGLDKVRLLAILKKYSNSFINGIPKSRVITGQLEIRLVNPNKTVQRRPYRLGLEEKQIV
RNMIEELLKANIIRPSCSPFASPIILVKKKNGSDRLCVDFRELNSNTVDDKYPLPLINDQIARLCGAKYFSCLDMASGFY
QIPIHPNSIDRTAFVTPDGQYEFLAMPFGLKNAPSVFQRAVMKALGELAYSYVIVYMDDIMIVAETIDDAFNRLEYVLKI
LSEAGFSFNVAKCSFLKSSVEYLGFEVREGEIRPNPRKKRSLSDLPPPQSVTQVRQFIGLASYFRQFIPQFSQIMKPLYG
LTCKDKVFEWKLEHEEIRQKIIKALTDEPVLTIFNPDYPIELHTDASMDGYGAILLHRIDGKPRVVEYYSRRTSSAESRY
HSYELETLALYNSMKHFRHYLQGKDFVVYTDCNSLKASRLKAELTPRVHRWWAYMQSFNFDIQYRPGSKMAHVDFFSRNL
LPNKMNTQVPIKRVQLAEISNNWLLAEQQRDPETSLIISKLQNDELEESIAKTYELRSKILYRKVQRNGKTRCLPVIPRP
FRWSVVNHVHEAIVHLGWEKTLDKMYEFYWFDNMRKYVRKFVEKCITCKLTKPSSGKPQVELHPIPKADIPWHTVHIDIT
GKLSGKSDQKEYVIVQTDAFTKFVYLYHTVNINAESCISAIKSLISFFWCANKDNCRSGQMLYGQ
>Gypsy5-NVi_gag#LTR/Gypsy 1629-3155  [Nasonia vitripennis]
MSDKRVTRNQSKNDPELQKEIDKFRQFRQVEDEDLGNESELSDTFNSATSHNSTLNTDIFDESENNTTGEKTVVDQVTLD
NSTNSVENKDNMSTAGTNISLKDALKVVPEFSGDLSELSNFLEGCQEAKDMIPTTAEENLTKVLRGKLIGEARKAILGEK
FKKVDELTNYIRDIYLPAKTVHQLQGELGSSYQKENESVIVFANRMRDLGTRILEAKRVATNAEVTEEFKKATTDNIIEC
FKNGLKPEIERKMIVADTVLDIVKNAITAERLLNAQNALRGINKSESSKLTEKKSVYFCKICRNNEHDTQNCNKKSNDIC
SICNRVGHPTSKCRFGNNSNEACQLCGVAGHQAKQCTGGKLNIICQICGIRGHGANTCRTIRNSVQCQLCGISGHKANTC
NRLNNQSSVLNQEQMINRSKLHCDKCNRNGHTAARCYAKTVAYVSNENNGNQFVCFYCKQPGHFIRECPVKRSENSRVLQ
NTGAIPKSQSQEQRQRENSPDLSELVPI
>Gypsy5_env#LTR/Gypsy 4926-6182 [Drosophila fruit fly genus]
YHFRLYMTAAQLLHVQHVKENTPLAEIKLGEARTIKTYSSVAHVIELTELKNNLNKLESSLQNLQDEDSNDSITPIQRKI
DQAREKIYSLTPNRREKRGLIDGLGNVIKKVTGNMDAEDAAKIETKFKQVFENEENINKNLGQQISYNNDIIVNFNNMSD
HFYKEQEKIERYINNFKNGISKELIVEDKKIRILQILNIINNNIDILQNHIHDIAESILLAKFKIIPNFILPIQELKDIA
QIFKLQNFSINSEEHIYRLLNIEIESKKTKIIFHIKIPIFDKYTYTLSHLIKLPINGTNFLTLPKYILYDDKFNYMLSFQ
EKCSRIHGTYICDPGTAESNMANRECVKQVLQGMNPVCEAKIINTDEAVVEPEQQWIVIISKNQLRAEPSCAEPFTIEGT
TDYQSHKLFHIYRRYQIR
>Gypsy7_AG_env#LTR/Gypsy 4962-6509 [Anopheles genus]
LIFYYRIAFFTLYGVLQASINIFDLTNNPLAIVPLGQAKIRIGYLRTIHPIDLTELEEIISRVFENSTNSTGKSPLQSLI
NLKLEKLNATISKIRPRRLRTKRWNSIGTAWKWIAGSPDAEDLTIINTTLNSLILQNNEQLLINNGLSRRFQETTNIANH
VIDLQNRIQREHQTEIQQIIKIANLDALQAHIKTLQEAILAAKHGIPNSELLSIEDLNTVAEFLAQNGIYYTSVEEMLTQ
ATAQVTMNSTHVIFMLKFPRLSYETYEYNYIDSIIQNDKRILIKHNYIIRNLTHMFELPQPCIDQSSHQLCESKDLEEPS
RCIRQLVQGEHTECMYEKVYSTGLVKHINNANILLNDATAEISSNCSNINHILNGSYLIQFHNCNIFINGELFPSTEVSI
TGKPYISTLGLIAKEDGIRDEPSIEHLRNITLQHREKLHTISLVNNSLTWKLHIFGSIGLTTIVLITIAILYFITSIRRT
KISLNIPTNNTNRQDVHHIETFVKKPTTFHALGRL
>Gypsy6_AG#LTR/Gypsy 28-4563 [Anopheles genus]
MSKEDGKVLRELESVSCPNSEPATIGKIRALYNDVLSITNTIESECIDQGDVDPKPTYSVTKEEASSAKPMHLSNHVEDE
IAILKQRLEILELRSKIAVLENEKQASKINQPLLPEALKQIIPQFEDGVGVNHWLKVIDHSSEMYGWDDNTTMLYASSRL
VGAAKEWYNGCRSEICTLSEFTAGLKRAFPDNRNEAAIHKELMSVAKRRDETYTAFIYRVNAIGKSGNVSDEAILTYIIN
GLARDRIYDNLVVRDYKDIYELMAHIQRCETLLKMRDTPSTSSYQRLENTRVNENQREKPNRAAQINRKDALASVRCYNC
SSFGHYSGQCLKPRRTIGACFSCGQHDHQKLECANAAGKNNIPVFATNETTSERDSYADIEKIKAYQQVSVSLETLNGVK
KFHSYVYSLFDSGSPTSFISETFVPDGAAKKASPSGYKGLGNKPLSSLGHIVCNIGFRHKIISHRFIILSKSDMDWPIII
GRDALDKLNVHLYHSFYLYSKEKLLSLNNKTMNYLKPHMMERLISLGVLKNDSDDRLKRKMPLIKAIEENKYNLKEIPFH
SLNHAILESSLSNRKKDDNSNQSFISDEFKYGETFAEMCAIDVNLPEHDFNIGSIVGIRERKQISSIIIDNYIKRQTGKI
YKENHKMTISLTHDTPIFCKPRKLSFAERNHVREIVKDLLQRKIIRQSNSAYASPIVLVKKKNGETRMCIDYRPINKITV
RDNYPLPLIDTCIEHLGDKQYFTLLDLKNGFHQIDMAPASIKYTAFVTPDGQYEYVKMPFGLKNAPSEFQRCINSVLREF
IDNREIVVYLDDIIIASKDLHNHLRILSAVLQTIRKNGLELKLEKCMFVHDELDYLGYHASSKGIRPSNYHIKAIENYPQ
PSNSKEVQRCLGLFSYFRRFVPSFSTIAKPLSSLLKQNAPYNFDGPCISAFNTLKEMLIKAPVLAIYDPQKETELHCDAS
SVGFGSVLLQKQFDGKFHPIAFFSKTASPAEAKLHSYELETLSVIYALKRFHTYVHGVPIRIVTDCNSLVETLKNKNCSA
KIARWSLFLENYDYTMQYRPGCSMGHVDALSRQQIAVATQDLDIDSQLRIAQSRDQEIERLKSVIERGMVNGYTLHDNLV
FRKLENGRLQFRVPRDMINNVIRSTHESIGHLGVDKCCTQISKNYWFPLMKTRVENFIKNCLKCIIYSAPARKNNRNLHS
IPKIPLPFDTIHIDHLGPLPSLQSKKKYILVVIDAFTKFTKLYPTTNTSSREVCNALNQYFSYFSRPRRLISDRASSFTS
TEFKQFILKHNITHVLTAVCSPQANGQVERVNRVIVPILSKLSDPIDHADWSSKLIAAEYALNNTVHSSTRISPSVLLYG
IEQKGPNINELTEYLKDNIPTTPRDLESIRVQASENIVNSQFTNETQFMKTHRPAIEFEVGEYVVIRNVDNSVNTNKKLI
AKFRGPYVIHKRLPNDRYVVRDIEGFQQTQIPYDGVLESDKLRRWIASETDLASESLEVSPSDSLAGPDLG
>SFV1_pol#LTR/Foamy gi|110282985|sp|P23074|POL_SFV1 Pro-Pol polyprotein (Pr125Pol) Contains: Protease/Reverse transcriptase/ribonuclease H (p87Pro-RT-RNaseH); Protease/Reverse transcriptase (p65Pro-RT); Ribonuclease H (RNase H); Integrase (IN) (p42In). [Macaque simian foamy virus]
MDPLQLLQPLEAEIKGTKLKAHWDSGATITCVPEAFLEDERPIQTMLIKTIHGEKQQDVYYLTFKVQGRKVEAEVLASPY
DYILLNPSDVPWLMKKPLQLTVLVPLHEYQERLLQQTALPKEQKELLQKLFLKYDALWQHWENQVGHRRIKPHNIATGTL
APRPQKQYPINPKAKPSIQIVIDDLLKQGVLIQQNSTMNTPVYPVPKPDGKWRMVLDYREVNKTIPLIAAQNQHSAGILS
SIYRGKYKTTLDLTNGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEIPNVQAYVDDIYISH
DDPQEHLEQLEKIFSILLNAGYVVSLKKSEIAQREVEFLGFNITKEGRGLTDTFKQKLLNITPPKDLKQLQSILGLLNFA
RNFIPNYSELVKPLYTIVANANGKFISWTEDNSNQLQHIISVLNQADNLEERNPETRLIIKVNSSPSAGYIRYYNEGSKR
PIMYVNYIFSKAEAKFTQTEKLLTTMHKGLIKAMDLAMGQEILVYSPIVSMTKIQRTPLPERKALPVRWITWMTYLEDPR
IQFHYDKSLPELQQIPNVTEDVIAKTKHPSEFAMVFYTDGSAIKHPDVNKSHSAGMGIAQVQFIPEYKIVHQWSIPLGDH
TAQLAEIAAVEFACKKALKISGPVLIVTDSFYVAESANKELPYWKSNGFLNNKKKPLRHVSKWKSIAECLQLKPDIIIMH
EKGHQQPMTTLHTEGNNLADKLATQGSYVVHCNTTPSLDAELDQLLQGHYPPGYPKQYKYTLEENKLIVERPNGIRIVPP
KADREKIISTAHNIAHTGRDATFLKVSSKYWWPNLRKDVVKSIRQCKQCLVTNATNLTSPPILRPVKPLKPFDKFYIDYI
GPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNMLTSIAIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFST
PYHPQSSGKVERKNSDIKRLLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNTPFANSDTLDLSREE
ELSLLQEIRSSLHQPTSPPASSRSWSPSVGQLVQERVARPASLRPRWHKPTAILEVVNPRTVIILDHLGNRRTVSVDNLK
LTAYQDNGTSNDSGTMALMEEDESSTSST
>HFV_gag#LTR/Foamy gi|9629128|ref|NP_044279.1| gag polyprotein [Human foamy virus]
MASGSNVEEYELDVEALVVILRDRNIPRNPLHGEVIGLRLTEGWWGQIERFQMVRLILQDDDNEPLQRPRYEVIQRAVNP
HTMFMISGPLAELQLAFQDLDLPEGPLRFGPLANGHYVQGDPYSSSYRPVTMAETAQMTRDELEDVLNTQSEIEIQMINL
LELYEVETRALRRQLAERSSTGQGGISPGAPRSRPPVSSFSGLPSLPSIPGIHPRAPSPPRATSTPGNIPWSLGDDSPPS
SSFPGPSQPRVSFHPGNPFVEEEGHRPRSQSRERRREILPAPVPSAPPMIQYIPVPPPPPIGTVIPIQHIRSVTGEPPRN
PREIPIWLGRNAPAIDGVFPVTTPDLRCRIINAILGGNIGLSLTPGDCLTWDSAVATLFIRTHGTFPMHQLGNVIKGIVD
QEGVATAYTLGMMLSGQNYQLVSGIIRGYLPGQAVVTALQQRLDQEIDDQTRAETFIQHLNAVYEILGLNARGQSIRASV
TPQPRPSRGRGRGQNTSRPSQGPANSGRGRQRPASGQSNRGSSTQNQNQDNLNQGGYNLRPRTYQPQRYGGGRGRRWNDN
TNNQESRPSDQGSQTPRPNQAGSGVRGNQSQTPRPAAGRGGRGNHNRNQRSSGAGDSRAVNTVTQSATSSTDESSSAVTA
ASGGDQRD
>ACCORD_pol#LTR/Gypsy 1998-5540 [Drosophila fruit fly genus]
MLSPTFVPSQPLKFLIDTGSTYSFINPALITEDNIKKLNSSIAIHTVLNTFQITEFTDTIKFKQFKELSNQKFLLFNFHP
HFNGLLGMDLLSTLNAKINIADSILETPETAVPILTRPNPVDILHTVPSNSKVRLPLPVNCMQGDFIYGTTDFDNQLSIT
GGLYTATAGIAYFEVCNSSDYNQTLYLEEPLIAEELSLQHYGLLHCMSTMADTTQTDTQQELNIKTEHLNQEEKFNLINL
CKTFRKLFHYEESHLTFSNVVKHSIPTVDNVPIFTKSYRYPYVHKEEVRKQISEMLRQNIIKNSHSPWSAPVGIVPKKAD
TTGKEKWRLVIDFRKLNEKTISDRYPIPNIADILDRIGGTKYFTTIDLASGFHQIEMNPQDANKIAFTVENGHYEFTRMP
FGLKNAPATFQRVMDNVLGDLIGNVCLVYLDDIIIFSPSLQKHISDIKLVFSKLLNANLKIQPAKCNFLRKEIDFLGHIV
TQEGVKPNPNKIQAIKDFPCPKTIREIKSFLGLLGYYRKFIKDFAKITKPITRQLKGKKSIVIDDEFRKAVEISKNLLCN
DPILIFPDFTKPFTLTTDASNYAIGSVLSQGPDTNDRPISFASRTLSDTEVRYSTIEKEMLAIIWSVSHFRPYLFGQKFK
IVTDHKPLVWLESFNGQNPKLLRWKTTLAAYDYEVVYKKGKQNVVADALSRIEPNLNINEDPQKIPVVQQPLNHFNTQIV
FHIGEKSSVQITTPFTYKTRQVISEPTYTFDTISNILQSILKPNKMTAIFAPDQIFLLIEEAYNNYFSVNDSYKISRCKL
FLPEITETEDQKTRILTYHLKNNHRGIDETFQHLKRDIYFPRMKDIITQVIKDCDICLTLKYDRQPHKPAMQSPPAPPGP
LEVIHIDIYFVNGTYNLTVIDKFSKFAQAYPLDNRNSIKIIAALSQFMSNFGIPKKLVFDQGTEFSGNLFNDFLAQYDIL
QHTTSFQQSTGNSPVERLHSTLTELYRIVMNRRKELHLQCEHTEILSEVLTTYNNAIHSSTNHTPFELFHGRTHIFGKTI
TYDNHHDYLSKLNQFRQTLYPQIQQHLQNTTDKRLAKLNKDREPPILVEENNTIYRKENRRNKITPRFSLHKVERDRGIT
LITTRGQKLHKQKIRKHIKRTVNTQSKSNTNT
>ATGP10_gag#LTR/Gypsy 631-1553 via tfasty with ATGP2I, 1 frameshift and 2 stopcodons. Trimmed 4 AA to first M. [Arabidopsis]
MMMKDLGVRKFKGEQNTVLADKCLRNLEMNFETxRCPEDFKGQIAVNFLDADVRAWWDSVVSRYRDQPITWEMFKKEFES
KYFPPEARDRLELQFMSLEQGQKSVRAYEQIFSRLRRYLYNGRDDEAMMVRRFLRGLRPEIRGRLQAVTYTNVSELTDRA
VNVEEGIELEKGNKFQENEKSEGKKGNNVEFQPGVLRTNxSGGRNPNNDRGKPKVGNQGGRVMTTYDPRACYMCGKPGHF
ARDCSTVVQTKVPILAFVTCYICGESEHVSNACPNKQAGLQDNRVRACFICRDLGHYANACPNRQIKQYNQMVNHPPPVQ
KAKGPPVKKQATLANVYALDVEPTKPSGPAKVPVTG
>ATGP3#LTR/Gypsy 33-4549 via tfasty with ATGP3B, 1 frameshift and 2 stopcodons. [Arabidopsis thaliana]
MVVTRSQEGECRDNKGKEVEVEESVETRMSRLELLVTEQNKAMMKQFADLYGVLSRSTAQKVVEDHSIADRGTPGGSHVT
NTRSGYAEPFRDDRYNQIRMDQHNAYGNLTRLGKIDFPRFDGSRLKEWLFKVEEFFGVDLTPEDMKVKMAAIHFDSHAST
WHQSFIQSGIGLEVLYDWRGYVKLLKERFEDECDDLMAELKHLHETDGIVDYHxKFELIKTRVNLSEEYLVSVYLAGLRT
DTQMHVRMFQPQSIRHCLFLGKTYERAHPKKPIVSNRSSRPTQAGGYSQNSKDKEGKFDQSSSRGGFKPVSQQPKKMSQQ
EMSERRAKGLCYFCDEKYTPEHYLVHRKTQLFRMEVDEEFEDASEVLLEDEDQDPRHMPQISVNAVAGISDYKTMLVRGT
YDKKVIFILIDSGSTHNFLDARMAKKLGYQVETAGLSRVSVADGRKLKVEGKIRDFEWKLQSTKFQSDILLIPLQGVDMV
LGVQWLETLGPISWEFKKLEMRFKFANQKVLLHGIHSGSVREMKVQKLQKLKEEEVQLAMVCVQEIQSNEEVDSELCMLN
TLAVETEVDSGVERVVNTYQDIFVEPTELPPFRDQHDHRIPLLEGSNPVNQRPYRYVIHQKNEIDKIVEDMLAAGTIQGS
SSSYASPVVLVKKKDGSWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGAVVFSKIDLRASYHQVRMAPVNIHxTAFKT
HSGHCEYLVMPFGLTNAPANFQSLMNSVFKTFLRKFILVFFDDILIYNSSLEEHEQHLKLVFEVMRENKLYAKRSKCAFA
VSRVEYLGHFISSEGISTDPAKIQAVQDWPRPATLKQLRGFLGLAGYYRRFVKSFGTIAGPLHALTKTESFLWSDEAETA
FHALKAAMCHAPVLALPLFDKQFVVETDACGQGIGAVLMQEGRPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYL
LPSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYKQGKENLVADALSRVEGSEVLHMAMTVVECDLLKEIQ
AGYITDSGLHDIIEALKKDPTAKRHFSWTQGVLRRKSKIVVPADVKIKDNILQWLHGSGVGGHSGREVTHQRVKGLFYWK
GMVKEIQAYIRSCNVCQQCKPDNAAYPGLLQPLPIPETIWSDVSMDFIDGLPVSAGKSVIMVVVDRLSKAAHFIALAHPY
SAATVAQAYLDNVFKLHGNPNSIVSDRDKVFTSEFWKEFFSLQGVALKLSSAYHPQSDGQTEVVNRCLENYLRCMCHARP
HLWSFWLPLAEFWYNTNYHTSSHMTPFEVVYGQAPPTHLPYLPGESKVAVVARSLQERENMLLYLKFHLMRAQHQMKVFA
DQHRTEHEFDIGEYVYVKLQPYRQQSVVLRSNQKLSPKYFGPYQIIDKCGEVAYKLKLPEYSQIHPVFHVSQLKVLVGNV
HTTHHLPSVLPDVFEKAPETILERKMVNRQGRAATKVLVKWVNEPVEEATWEFLFDLQKKFSAFVD
>EFV_bel2#LTR/Foamy gi|9634982|ref|NP_054719.1| Bel2 [Equine foamy virus]
MRNPGLGCLTWTGQLNGMGRFQIQLFRNLTLISVCLGSDHHKGITDYCCGPASCYTIVWEISAEVLATGTPYLFRAQPHH
RPLQTPAPWSKRLIRTRYIRNSVEDQFVHFATEANYTPLSAQALSIKAIRWHKGQLACEGTPRIGQAGIPETIYAGIKAY
GWFIPGKKERVSWNEDPETKNIAIPSSTEVQEWFPMEDVDDRAREPLDGSETHQEIAEFACAMLPPGWCIVRPEGRTYIS
TGPDTSDEEEDKALAPKILKTHPSICPKHPRHHKIGGRFVSDLLDSPSSSDDEEEARQNLARVLEAALPHPGEDSSDDDP
LYLGEPERD
>ERVL47_pol#LTR/ERVL 1560-4952 [Primates]
GWGQGCLRVRAIGGDQRPHVELTIYWSPKNKQRTLALVDTGAECTLIHGNPERHPGKWAAIDGYGGRTIRVKQTPLXLGI
GRSPPAYYTVFISPIPENILGMDVLLGCTLQTSVGEFRLRVRVVKAILRGEAKWEPVXLPPPRRVVNVKQYHLPGGIEEI
TATVQELAKVNIIRPAQSPFNSPVWPVXKPDGTWHMTVDYRELNKVVPEIHAAVPNITQVIXQIIQNIGTYHAVLDLANA
FFSIPLHPDSQDQFAFTWNGXQWTFQVLPQGYLXSPTICHGMIARDLTLCPLPPAVKQFHYIDDIMLTSEDLSLLQQHLD
ALCTLLQSRGWAINPQKIQGPGPAVKFLGVTWSGKTRLIPGTVIDKIQQFSTPKTVKQLQSFLGLLGYWRAFIPHLAQCL
RPLYRLVKKGSSWCWDKXQEEAFEKAKILVAQAQALGSPLPGIPMSLDVTVXPEGTSWALWQVQHGKAVPLGFWSQLWKG
AETRYSPIEQQVLGVYKALQQVEPVTAALPVTVRTGLPIKGWIEGLFARPASAIAQASTLQKWHAYLQQRSALSTSPLGD
ELHAILGPVHYETSAAPVVEPPQEMPPMVHEGTAPIPENAWYSDGSSRGNPCVWTAVAVQPQTDTIWFEMGTQQSSQWAE
LRAAWLVCTHEPWPIVLCTDSWAVFKGLTTWLAQWARDDWHVLXKPLWGAAMWKDIWERLQEPAASLIVYHVSAHWSDSP
PGNMEADTLAKIRTLAPSQSSELADWVHKHSGHRSARVGWQIAKGAGLPLRYADLAAAVTNCLVCSRLRPRHIPHTPGHX
HKTAAPVRDWQIDYIGPLPVSLGQKYALTCVDTATGLLQAFPCKRANQTATIKGLEQLSVMYGYPRRIDSDRGTHFAGHD
VQDWAHEKDIDWRFHLPYNPQAAGLIERKNGILKAQLRALLQSNTLHGWAKVLPQAIRNLNSVETNTGLAPYQRLGTTAE
EGPLTIVVKKVRPDAFLPELIKGQWQMLFRTPQDLEPGEGTLEWGLDWQLPPGWIGYFLPESEEFPGQLKWSPLILLESG
PRRSTYQYTGTRPLLKGTLVGRLTWSFAAPVTLTDNTGTFALGQHVWYAPPAHNPXAAYVLTNRDEATTVILLDGEELPR
QVPTKHLYFRP
>ERV3-3_Crp-I_3p#LTR/ERVL 4915..7389[Crocodylidae]
MKWWTVMNVLFLLMPYCVSWVGHVYYPSYYPDINELAPEDLKEWPDPEEHPPETRSDGLHVVQLQYPYWKKPATPEQVKS
WSLSRRNRIVDWQGGNCQCTCGTSYYLGFIPYLKAGMADCGRGGDCCSSARLGICCYILPEGNPVELNAPEFVSPIVHSA
SVQPLEPLRLWENLPPPIPMADRTLQRWCEAHQVGERITGWNKVITWFVNHTYTEAWWNGTHFNTTRRRLYPQVSTTYPH
PFIPVGFLKQISAMILPGQCRFINPIQHRPHERQWELFRSLGGEAWLQAPREGRINVTCEKTGCSLLSLAVPPREAPTPP
VYNSTPWWRSQVKIPTLLNASLFTARVLFRPEQWYVRATFPNCSAGARVAEGLLRWEWPVIFRSISALKSRRQRDTPGYL
WDGLNSAMNVWNLDKSQKNTEGVANLRQAVGLLTRGGMLEGKTLEHTDELLTDVGLETARLAQVMMDTAFKADKNQTWST
ACAQVQLSLNMHFSQVINNVKNREWPPGLEHHGMPATFKERYPYQSTWVTTWEGCDKGKCSFLVQGVKEGNWTTAYLLNT
GLGGGCLWDWNLHRPIWEIVTPDGPRYVAQSPLVQISSTLIGLGTLWRGWPLSPPNMTCVYELPNVSYVTIGQRVCWEGP
GRLLHENGTTWTLCNSCCLGAKSGAVALLQLSNRTIALKWPEISSETISLNFTIPTSWVSDVDMPRLENWNNVKNKLQSL
EAKARRGTQLALLAREGGRIISLAVNVPEPCKWYDVICAIRVSPSVTSTTWLTILSIIVFCIALVATAKWCFNRCCRKSV
RAMQVKFIDPSPFPDVAHVALASQL
>MER70_env#LTR/ERVL 3470-4888 [Eutheria]
MVPTEVVASGQGQTDWVATPTQPNPYLIGREHLRPWKGWGWGTNLSVCFFHKDVAAEAWKHNAFVRLFQAVATAGNLTKC
WICHPGPHSVTDQRDPLILPVVNYTSIPNATVYTNRTRALAYRVRIWHLPHGREPEVPCFNLTDLRWQNVTTTTNKTLVG
WYFDAPHSFDYMDEKCPSGDDENKDRTIASPLCRGFMNNIVWGKLSSCNYAINETWLVNANASIPMNGSLNNKMGKGVLC
APEGYIFLCGRSGSDPNTGWAMSCLESWRMVGSCTLGVLGVPLDITPGNEMHHWASSLKLYTRLTRDLPGGVTDSGFMSF
MRSLVPYIGVSAHEKMIRNLSLTMADIASSTATALAAQQTSLNSLGKVVLDNRIALDFLLAQLGGVYAIANTSCCTWINT
SGIVETQVEEIRKQVHWLQTVGPPEGSFFDLFSNFLPGSLGSWARSLLQAGLIILLVVVVLLGPVKCILAMAQ
>BFV_pol#LTR/Foamy gi|9629646|ref|NP_044929.1| pol polyprotein [Bovine foamy virus]
MPALRPLQVEIKGNHLKGYWDSGAEITCVPAIYIIEEQPVGKKLITTIHNEKEHDVYYVEMKIEKRKVQCEVIATALDYV
LVAPVDIPWYKPGPLELTIKIDVESQKHTLITESTLSPQGQMRLKKLLDQYQALWQCWENQVGHRRIEPHKIATGALKPR
PQKQYHINPRAKADIQIVIDDLLRQGVLRQQNSEMNTPVYPVPKADGRWRMVLDYREVNKVTPLVATQNCHSASILNTLY
RGPYKSTLDLANGFWAHPIKPEDYWITAFTWGGKTYCWTVLPQGFLNSPALFTADVVDILKDIPNVQVYVDDVYVSSATE
QEHLDILETIFNRLSTAGYIVSLKKSKLAKETVEFLGFSISQNGRGLTDSYKQKLMDLQPPTTLRQLQSILGLINFARNF
LPNFAELVAPLYQLIPKAKGQCIPWTMDHTTQLKTIIQALNSTENLEERRPDVDLIMKVHISNTAGYIRFYNHGGQKPIA
YNNALFTSTELKFTPTEKIMATIHKGLLKALDLSLGKEIHVYSAIASMTKLQKTPLSERKALSIRWLKWQTYFEDPRIKF
HHDATLPDLQNLPVPQQDTGKEMTILPLLHYEAIFYTDGSAIRSPKPNKTHSAGMGIIQAKFEPDFRIVHLWSFPLGDHT
AQYAEIAAFEFAIRRATGIRGPVLIVTDSNYVAKSYNEELPYWESNGFVNNKKKTLKHISKWKAIAECKNLKADIHVIHE
PGHQPAEASPHAQGNALADKQAVSGSYKVFSNELKPSLDAELEQVLSTGRPNPQGYPNKYEYKLVNGLCYVDRRGEEGLK
IIPPKADRVKLCQLAHDGPGSAHLGRSALLLKLQQKYWWPRMHIDASRIVLNCTVCAQTNSTNQKPRPPLVIPHDTKPFQ
VWYMDYIGPLPPSNGYQHALVIVDAGTGFTWIYPTKAQTANATVKALTHLTGTAVPKVLHSDQGPAFTSSILADWAKDRG
IQLEHSAPYHPQSSGKVERKNSEIKRLLTKLLAGRPTKWYPLIPIVQLALNNTPNTRQKYTPHQLMYGADCNLPFENLDT
LDLTREEQLAVLKEVRDGLLDLYPSPSQTTARSWTPSPGLLVQERVARPAQLRPKWRKPTPIKKVLNERTVIIDHLGQDK
VVSIDNLKPAAHQKLAQTPDSAEICPSATPCPPNTSLWYDLDTGTWTCQRCGYQCPDKYHQPQCTWSCEDRCGHRWKECG
NCIPQDGSSDDASAVAAVEI
>BFV_bel2#LTR/Foamy gi|9629649|ref|NP_044932.1| Borf-2 [Bovine foamy virus]
MTLDAVITHWKWQNQYSPGGPTVLWSQRSRLGCWETQMRLPGFGQVMIKAHRNGTLMMICSGHDPKLQNDMCCGPPVCYG
IFCREGLHEREQQCWPTIIRFNQGHPALFDNSSASFSETQKYLRGTPELDFIRFKNSVNYTPASGPMITWKSLKFQAAQL
EDMRNPRIGQIGFSTNLGPGIHAYGPAMPSRQERVWWEDHPEISKGQPPFTCPEDWLECEEDSENEELSVSPLTGWEPHR
DLKKWVNFALPYGWSLMDPLGNRFRSQRKDDSDESTSTDSEEELQEIQQINPAEVGPSRPPGGYSKLRRRRRVPAARLYA
TTDSSEEDLDLKTSQ
>Athila0_env#LTR/Gypsy 6466-8394 [Arabidopsis]
EFSFTMSSNSNESSMDADFNVDEAESWSTRPQREMEEYRRFSQHAAKVLARDRRRAEIARGKRAMAEERSLVDEDLGGDE
DYVPEITPRATKSLMKKTKLSPDGYYELLAAHEFHGTRYPHSETMNELGITEDVEYLFEKSGLLGLMTNPHSAYKTEALQ
FLASLEVELFQGLSSHEAREEGLGYITFAVYGKDYVLAIKTLEDMFGFPRGTDVKPKFKKEELSDLWVTIGDDAQFSSSR
AKSNAIRNPCIRYFQKAMANVLYAREKTGPINNGEIELLDIALKDILVYTKNKVPMKGDTNDASPSMRLLNHLCGFRKWA
LANKHKRTISIGGVITPILMACGVPLQSTPFAPRWIDIPHLRWALFIEHQSHEGMHILKFQHRTEMDARLLLPNQELTTI
TVRGNIDFNPPNEELFFMERAPPTREAPDNEERVESEEGAENEEGEEMDWENYNASRFHFEEHKPPPRVSKSLTVAHKNI
GSMSAWNKFQDKMLEKCGKAIAAIQAVLSCSSSGATMVRENRPEEVVSRRHRVSPSRQSAYEQREVSRPQAPARHSSHEH
REQKRRRKTRIVRPRSKDLLMSSRRSLDQDTRRDIEQSVEQDPWVQNEQSVEQNQWDQDGQYSGMNWDAYHGINEQEPTS
DN
>CEREBA_HV#LTR/Gypsy 1153-5996 [Hordeum vulgare]
MPGSHDEEIDWENLTNQELYDKFQQMMSQQVQGFLTTFEEAMEKLDGMEQKFDTKMNAKFNEVLARLPPPAIASVPLQPQ
QRRRPGRVPLGHVQPFIGLEPPTAAAGAGAGTAAAAAEVSTAEQHDDYDDDYDGDYDAEGEHAPVQHGEQQPPPRQAAGR
PHGYNRNGRDAPHPQVRDHDHLPKVKLNIPSFDGRYVPDLYLTWELETEQRFTCLQFPEDRRVAAAVCSFTSFACIWWSE
YCRIHHANIPATWAALKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQELQTGMIRCGIVEDNEAMLARFMGGLNR
DIQTILEYKDYNTITRLFHLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTSTRPPASAPPVSAANSTRDTRKQAPA
PSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKGGGHYARECPSKRVMIITEDGGYDSASDYDEETLALIASEERGVXD
TAQETQYMAADYADRYESLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLTTRPH
PHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLP
MSPEHIMKDDIARASKAKQDLHKSENQIVAKEFEQHNKPNKSSSSVASEIKLKSGCLLATKSDITDLDITTSVCYAFVCK
EVLFSFEDMPSSLPPAVINILQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDK
GYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEW
KTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNL
GKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNELTKKDVPYSW
GTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTL
ETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKDKKGKDNVIADALSRRYTMLSQLDFKIFGLE
TIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFW
PRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKS
DDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKTN
LKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENIERMNARY
KLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLELPXDFGVSPTFNIADLKPYLGE
EDELPSRTTSVQEGE
>CER3_CE_gag#LTR/Gypsy 768-3050  [Caenorhabditis elegans]
MSRNPQFNTPPPNAPDGAYRSNSRLIDGSVVTTAYLVSLKAGTVKDVNSLYGSIVENKATVKAVDDKVVVIGNKCDDVSA
KLAALQNRIRELEDMVKRQGEESAQAGEERAGGRGTSGPSQVAGLSLGRPLLNSNLTPRDVLSGSSAGSNATDSSGSGSP
MPSSLQNRDVVEEQSEDQQLNSGELAGDQDDLEEATNSIRGISPSIGVIGFKTAATLPPFNGNLTEDFTTFVRKFKDRLA
ASTEMDNDQKRSTFLLFLDNRARSTADGIIGAQPAITLEDLITKMSAVFENAAVQEHREEQLRYCTQQKGESVELFFQRI
DKLQRLASTGPRSEEMKKVAFRAFLEGLGEHLNYAIRSRRPKDMAAALDEALHEEMLVNANVARRAVPTAAAYMASIGNQ
GKKQQQQKQSQSPKFLGEWHYCHKKGHKLADCRKRAADRGVAKSSVQNPVEHHQVKQAAAVSGTENWQLLEQNTALQAQV
RDLAGRLERFQPSFDGSSGSNVCSLTWSKSKSFTFEDATPQQNSQSNSFITAHIPVKANQIPYSALVDTGANITVTSKDL
LKGLGISRTLPMLNAQAVGLGGHTVDMVGSAVVQFKIGTHTIDHRVHFTTGRCMPEINGEYQFIIGNDMLSKLPMFVFNY
KDALFHIGDDVLPLGQSFGQPSKPRKFNVKVCEDTIIPAGTEKYVKCSVSPQPKDREVILMIDSVSSGIDNLFVSPAVVM
AQDAVILVSNPTDQDMTLNNSEVAASASQVTQHDGVLCCL
>Chimpo_pol#LTR/Gypsy 854-4059 [Drosophila melanogaster]
MLLALCLGATAGKLKKLSPVQATGDSRPPSTRLSKEYRLHIIDRNTHIKFLIDSGSVISLIPVSIIKGLHRRKDDFKLYA
ANTSIIDTYGTLNNLTFGLNLRRNFTWSFVVANVQSAIIGADFLTHHGLILDLKGKRLMDPSKAVSTKGEVAEAKLYNVS
TINVQSSSGIDRPYSNLLSRFVQITRPNVPLATRIHNEVAHCIQTTGPPVFDKPRRLTGEKLKAARRDFDLLLQQGVIRP
SSSQWASPIHLVPKGSNEWRTTGDYRKLNASTIPDRYPIPHGEDILQRLHGCSVFSTIDLVRAYHQIPVAPDDIPKTAVT
TPFGLFEFVGMPPGLRNAAQTFQRHMDNLLRGIPFVGCYMDDIIVFSTTHEEHLKHLQTIFEILQRNHLQINPKKCQFGK
SEVIFLGFQVNASGFKPPVERTQAINNFPKPQTIMELRRFLGMVNYYRHLIPNAAQAQIPLTDYLKGATKNDKREIAWTG
PAESAFQACKQGILRATCSSFLSPSAHLALKTDASDTAIGAALEQLVGNVWRPIGFFSRKLSPAEQGYSTYDRELLAIFA
GIIHFKHILEGRPFIIQTDHKPLQYAFRQKASKASPRQLRQLDFISQFSTEIVYNPGENNAVADALSRINTISMPSSFSA
QAIFEAQQTDDEMAELSQTTSLGLQVRNIDNLDIWCDISGGRERPYLPKSLRRQAFDAVHGLAHPSGRTTAKLLKQRFVW
PAINRDATLWSRQCVPCQRAKIHRHTRSPVEKIDVPDNRFEHIHVDLIELPTIRNLRYCLTIIDRFSRWPAAIPLSNITA
ETVATALYTQWICMFGCPLTITTDQGTQFESSLFAELAKLIGAERIRTTAYHPQSNGIVERWHRTLKAALMCKSHIAWPD
LLPTVLLGLRSAFKADLQSSPAEMLFGTTIRIPNEFFESHTPTAFSKDHRLTEQLRQHIRAARPTPAAHHAKPPVFICKD
LRTCTHVFKRVASVKKPLEPPYTGPHRVIRRVDDKFYIISIHGQEKAISVDLLKPAFLAEADACEDHHEDPPPDQQISQP
PTPPSPAPAAPEFIPLPSPPGEVTGGGV
>DM176_pol#LTR/Gypsy 1944-5012 [Drosophila fruit fly genus]
MTSKNIFDLPIQNTSTFIHTSNGPLIVNKSIIIPSKILFPTTNEFLLHPFSENYDLLLGRKLLAEAKATISYRDQEVTLY
NNKYKLIEGIATHEQSHFQNVNMIPDTMLRQPNKISPILESDLYRLEHLNNEEKQRLCALLQKYHDIQYHEGDKLTFTNQ
TKHTINTKHNLPLYSKYSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITV
GDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPL
LNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIP
TKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDAS
DVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRW
RVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAEEDNSDLIFITERPLNTFNRQVIFSKGPPDIKVTKYF
KKHITQIFYDIMTREKAEQYLIDHFCGKKSALYIESDADFEVIQAAHKLAINTKYTKILRSTILLKNITTYAEFKELILT
AHEKLLHPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAKTEHRNTDMPTKTTPKPEHCREKFMIDIYSSEGKHYV
SCIDIYSKFATLEEIKTKDWIECKNALMRIFNQLGKPKLLKADRDGAFSSLALKRWLESEEVELQLNTTKTGVADIERLH
KTINEKIRIIKTSDDEETKLSKMETVLNIYNHKTKHDTTGQTPAHIFLYAGQPILDTQQNKENKINKINNDRVEYEVDTR
YRKGPLQKGKLENPFKPTKNVEQTDSDHYKITNRNRITHYYKTQFKKRKKNNQLSISQAPGT
>Chouto_pol#LTR/Gypsy 1848-4940 [Drosophila melanogaster]
FFRGSSLLPFVQRTVAGEQRKFLVDTGASKSYIKKEIGLPTSVPVDSPFIVKSLHGFEKIERKCELDLFGVESHFFLLPG
LKTFDGIVGLDLLAQVGATIDLKGNSVKFNGGREDLHFQKCAQVNFTKIEDIVVPPKVQEDFQQMMCKNSRAFDDPNEKL
PFNTNVVATIRTEDNEPVYSKLYPFPMGASDFVNREIKDLLRNGIIRPSRSPYNNPIWVVGKKGTDAAGSPNKRLVVDFR
KLNLKTIADRYPMPSINMILSNLGRSKFFTTLDLKSGYHQIELAELDREKTSFSVNGGKYEFCRLPFGLKNASSIFQRAI
DDVLRDKIGKICYVYVDDVIVFSETEESHIVHIGQVLESLHKANMRVSRQKSKFFKESVDFLGFVVTKEGIRTSQDKVQA
IKDFKQPSNLFELRSFLGLASYYRCFIKDFASIARPLTSILKGESGRVSKYRSKGIPVSFDKSQLRAFDKLRSILASEDV
ILHYPDFTRPFDLTTDASSFGIGAVLSQGNRPITMISRTLKERELNYATNERELLAIIWALDCLRHYLYGKNDINIFTDH
QPLIFAVSDKNPNSKIMRWKARIEESGAKVMYKPGKENCVADALSRQNINALQSSSESDRATIHSEESSTFVIEATEKPL
NCFQNQIVLEEASVPNKRLFIVFGTKTRHQIDFTDWETLLDLVKDVVTPNVVNAIHCELPVLARIQDSLVRLFPATKFWF
CKSWVADVIKPDEQKEILVIEHNRAHRAAQENVKQVLLDYYFPKMGKIAAEIVLNCRVCQKAKYNRHPVKQELGITPIPT
QVGEMLHIDIFATGGKYFLTAVDKFSKFAVVQPIASRSILDVKTPILQLVNLFPNVKSIYCDNEASLNSETIRSMLKNQY
DIEIENAPPLHSTSNGQVERFHSTLIEIARCLKLERKIEDFTELFLQATIEYNRSFHSVTNRKPVEIIHANADIAPDIIM
SLKKAQQEQLDRNNPTRQNRVFERGEKVLVKTNKRLGDKLTPLYVENRVDADIGTTVLIQGRVVHKDNIR
>Bica_gagpol#LTR/Gypsy 527-4779 [Drosophila melanogaster]
MRVKLRDLKIGDLDVILRAHDLQVKGNKTAKINELMTKLESDEIETDDYDIMEQNASTSMQAQINELKEMVANLATMVQT
ACLQQQSQAQGTVEQETTRLRQTLDGSRHTHAPNGMQPENVLSSPQLEAQGQGFTSIKEMIGILPDFDPIKGSITSEQFI
AKVEQLQSVYMWTSDAVLFAVQHKMRGVAKTWLDAQQVYRSWDQFKSAFALDFPCLVSTADVHRELMRRKRRNSESLIEY
FYAMVAIGRRASVDEPSINSYIINGLNSKELTKSLLAMNIRTCSELLKSLENLRFSQEIHQQQYNASTINEKQYNDADGK
MKAVKCYNCNNFGHFAAKCTVPQRKERCSKCSKIGHNEKDCKVKTSSTVAQVNESHHKEYPPIMKTVLIGGQQFEAFIDT
GSDNTLMKEAAVPDGAIRQPRVKRLKGFGGSVVESKECILSEFAYGKLRLFTQIQVVPNEVLPYDVLVGRDIICHDQEML
VAEDSGSTLTAAEQVGFNVNTDIDPDHQEQVSDLLKSYKECFAEDLSNIGRCKTTKMDIEVSTTKAILGRRYQVPFAQRE
MMTTIIGDLLKYGIIERSKSTHAASAILVPKANGERRLCVDYRALNAVTIKKRYPMPIVEEQLAKLSGNVYFTTLDMTSG
YYQVPMDKKSKNLTAFMAPDGLYEFNVMPFGLVNAPMVFQEVITEIIRELKHQRNIINYVDEVIIASKTVEEGLIILKEF
LDAVKLAGLTLRPSKCAFMKTKVTFLGHVITGNGIQPGNEKTDCINEYQRPCNETEVRRFLGVTGFFRKFVKEYSMIAYP
LSKLLKKDVDFIWGEDQEQAFQRLKDALTSKPVLTLYDPTKYHEIHTDASKLGIAGIMFQREEDGTKPVFYYSRLCSDAE
SRYSSYALEILAITETLVRFRIYLLGSPFLVVTDCNAVATLKESTELQPPIARWWLKLQEFNFTCKHRPGADMPHVDGMS
RQPVLPHGETSHTVADNVLAIVPTDEDWVYAMQRQDPILAQIFEVFRTKEKSSQWSQVKADYVVEASRLLRKTANGNKLV
VPQAIRWRITKANHDDIGHYGTDKTIQRIQRNFWFPRMRRYVKSYISSCPECCINKVKGGKPEGSLHVYDTLPIPFRTIN
MDHIGPFPKSKSGNLHILVIVCAFTKYTFLAATRTTKTTPVIKALQQLFAVFGQPSRIISDRGTAFTSKEFENFTKEQGI
QHIKTAVRTPRANGQAERMNKTLLNALKTSTEKTKEWDQQLFKIQWGINSHINATTKFSPNDLVFNFNPRDVTNNRLIQA
LSDDSISESDIEMKRQQAAANITNEQKKWKIRFDAKHAQPTKYEVNDLVVITFVPSATGESHKLDAAYKGPYIVTKVLNN
DRYMVEDLPDHTVTQRRYCNVMSSDHMRPMCALIPNLDIDEPIYEYNDDAGMSGEAG
>ATHILA-3_SBi_gag#LTR/Gypsy 334-2286 [Sorghum bicolor]
MAQKTLQEFSAPSLDNIPTGPRFAVEEGIPEFELKSSLINLVQATQFSGKAHEDASAHLQNFLEIGSTIHINGVDKDVIL
LRLFPFSLEGKARKWFYTHQDNINNWTNLSDAFLSKFFPIGKTTALRGNIVSFQQQKTEAISEAWERFQGYISDCPHHGM
ATWLLMQTFYHGLTQKARECLDASAKGSFLELTTGKAEILLDKIAENQSWFQDKAQQCHQTEEIPEEVNALSTKMENLLH
WIDQRAKFKEDQRAIETAYKYQPTSSQPNSKGMNSGNTFKQLSLKEIIAQQTKINDEVKQRLDTNESSLKDIHNKMDFLL
TAFDEQNTLNKRVELKLIKIAAALPVATNLEQVKNITTRGGKATRDPPYPKEKQRTSAPVQPAVIEEESPVEAEDLLQPP
RTGEMRKDFYDTNYLPFPRRNRGLQSDEQFGKFVEVIQKLYVNIPLLDAIQVPTYAKYIRDILNKKRPLPTTEVIKLTEE
CSAAILNKPPKKKEDPGCPTIDCSIGNQHFNNALCDLGASVSVMPASVYKKLEHATLEPTSMCLQLADQSVRHPLGIAEN
IPVKIRDFLVPVDFVVLDMSPDSKVSIILGRPFLSTANAHIDVGKGEIKFNINGQEEHFTFKPRPERDSTVKEVHEEPLE
TPSPEEGNSED
>Athila5_gag#LTR/Gypsy 184-2946 [Arabidopsis]
MQTRSQGSGNLLRYRDDIDRIQRELREQQATSNPVVMANEANANELPGNIGAGDAPRNHHQRAGIVPPPIQNNNFEIKSG
LISMIQGNKFHGLPMEDPLDHLDNFDRLCSLTKINGVSEDSFKLRLFPFSLGDKAHLWEKTLPVESVDTWDDCKKAFLAK
FFSNSRTARLRNEISGFNQKNSESFAEAWERFKGYTTQCPHHGFKKASLLSTLYRGALPKIRMLLDTTSNGNFLNKDVAE
GWELVENLAQSDGNYNEDYDRTNRGSSDSEDRHKKEIKALNDKIDKLVLAQQRNVHYITEEELTQLQDGENLTIEEVSYL
QNQGGYNKGFNNYKPPHPNLSYRSNNVANPQDQVYPPQNQPPQAKPFVPYNQGYNQKQNFGPPGFTQQPQQTSAQDSEMK
TLLQQLVQGQASCSMTMDKKLAELTTRIDCSYNDLNIKIDALNTRVKSMEGHIASTSAPKHPGQLPGKSVQNPKEYAHAI
STVNTSATADSGIQEGEVLRPRSRQEIELDFFARLVERAHDPSNPIPIPPPYEPKPYFPERIAQINERIFQKHKMMFIKC
IKELEEKIPLVDTPKEVIMERPQEAQQIVELSFECSAIIQRKVIPKKLGDPGSFTLPCSLGPLVFNNSLCDLGASVSLMP
LSVAKRLGFDKFKPSSIHLILADRSVRVPHGMLEDLPVKIGSVEIPTDFVVLEMDEEPKDPLILGRPFLATAGALIDVQM
GKIDLNLGKNLHMSFDIAKKMKKPTIEGQLFFIEEGNLDAELLSGLENSIPYSIPTHHLGEPEEPLMIEGEPSSEVETKR
NHFDVGPIARELMELRKQYGAQGETMEKLDLKMEELNYAILELKEMIKGYPGPEIEEYFEEPDLGEEDYTTDEKEAYFEE
RSNEYSTLQLSRENAEYDSDFEDSASEDEDFSVPLLNLFST
>ATHILA-5_SBi_gag#LTR/Gypsy 154-2673 [Sorghum bicolor]
MPGFSLPENYISDPEALLRTRRSRTVSSSATPPTSEPAGTAPTPNELMAAEKTLREFSVPAVTNVATGPAVDTAGKNFEL
RTGLITMVQASPFCGLPSEDANAHLQHFLELCDTIVIKDITPDVIRLRLFPFSLVGKAKRWFYQDKEAVTTWAKCSAAFL
AKFFPISKTNALRGRIASFQQNASETIPEAWERLQEYILSCPHHGMENWMVLQNFYNGLTPMSKGHLDAAAGGAFLSLTT
AGAKALIEKMVEHQSWGEDRTQPPAAKTQKGMHTVKETDMLAAKIDLLMKQLTERNQENPSNSVKAIDSHMTCEVCGEVG
HSGNDCPETREDAAYINNGFRQQGGANQGNGWNNQSRSSFQGNSSFNSNQPSLKDLVLGQAKINESLTKKLLSNDKVLEN
VNTKLENLTSSVHNQLSFNKMLETQIAQIAAALPTEYKNNSENVKAVTTRGGKTTRDPPNPNADAGKDKEQQEITKKTQK
DVRPEEEEMAPKDPLGYTDTTYLPFPTRNRKQAVDEQFTRFVEMIEKIHVSVPLMDVLHVPSYAKYIKDIINNKRPLPST
ETIKLTEECSAAILNRLPEKRKDPGCPTITCSIGTQRFDHALCDLGASVSVMPKVVFDQLNFTQLKPTTMTLQLADSSVR
HPTGIAEDVPVQIRGLFVPVDFVVLDMELTKESPLILGRPFLSTAGAQIDVKEGKISLHINGKEEKFEFKPRHQEQCSMI
RVRYGPNKQIKEVQIQPEIIYSISKSVKRPTQKPEQKKKAAPKKKHEEQNKACKQNKAPEEKESPLPPKKVWKEIQKATT
PPKTNQMKWRPKKEQASPSTSPGQGDPSPSTGEKGLAHQT
>Atlantys-2_OS_p2#LTR/Gypsy #ReverseORF 6707-10186 Rvia tfasty with RETRO2A_p2, 2 frameshifts and 1 stopcodon. [Oryza sativa]
MAQDAGDAVLPASRITADRHLSLPRKIMPEDAAVRAGESRPRPRYPERSVHLLSFAMAGLIPPFSRFFHEVLDFYEIHAL
HLAPNAVMTLAIFAHLCEMFIGVRPTMRLFQSFFVPQLLQGAVVGGCYFQPRPGTAGQYIESHLRKKWEDWKKDWFYTAL
PDHPRLRLPAGPPERSAAWLAVSELGEEYDAVRDRLRGLRSLGLTGAMVFGDYFRRRIAPLQDRSRGAWEYTGPNDPMRT
HVGERWDWGEEDAKTVIRRVLGLDTAEQTLIPDGILPLCSDRDRESILAVMSAVGAGRSRSRRGGAGGSAVGAGSGGATA
GGSRTSGPGGGGSSRAPGPSRGPGGDSASDPKGKRKMSESRPPSPPRGGGAERAADRPPAGHKRPAAPEAGRKKKRLRKI
GQTEPCRGSFIEPPKWTFNRPPRRYDCRHPLRCSLPISVSCSFLFFSLLTxSGFSCSEIPSQGISGSDPSQGTKSERSER
PGPGRSKAAGPLPLAAAASLPGATPRPGPTRSATRERGARERRGPEAEAGGGPEPEAEAEAGGGPEPEAEAESTRGPEAG
GERDSRSPLHLGRPRGWPRRRGAESSPQSRGGSSSTPSSRGRTATFSSPTPASMEPLLQVLAAADSTVREGLNAQVQALA
EERAALEAEWAQLAADRARVDEGRRAVDDMVKVGRKMRQAQLAEIQAREETLDSVMRETEEERQAALIASSVLDEALGDI
RLQYEAHAEDLAKRVKDARGVLDAAAAQERRASEADASLRARTAALEAERKALDERARSAQEFEATIRRRIEVLDRNQRE
QNARSQEQAQRAQELEGRAQALEERARLLDQRESTLAAHERTAAEAEASLRLREEAAAERDRTTLAAKASAARRAEELRL
REEACRERDAALAEREAEVNRREVASRRLGEQLAKREEAVAGREARHLESARAERAAMAARASELEAREKDLAAGGQPGG
AELVSQLTAAQSTLADLERLVQDQAGEIAALRLTNEIGPGQLSDAVDRLERAGRRVGISVRRDSKLPPTQPALALRLDGL
AADLERLEEEVGETVKSSSASLARAAVELVLASHQARDPDFVPWRALEDFPPGTEARAREQVREAADAIVSSFEGSAPRF
TFGLASDEESGSGDGGDDVGGEDWDDVVSGAGLGGPGTP
>Atlantys3_gagpol#LTR/Gypsy 64-4557 via tfasty with Atlantys2_gagpol, 3 frameshifts and 6 stopcodons.  [Arabidopsis]
MVQIIIDPVIPPVNDDGTESSLLNGGDPPSTVEVAAKATANQPAHGATPIDPPSFSLEDLKAILTTVTKDLSESVMETNR
RLDELAKGISQRPSSEVTLPRIIHPRGLSFDLTDAQSNRMKPRFPGSLHPINQEGRPPMPPLTSPGHVSRSATLDHDGKL
DDIYLKLREIGSQVHRASSLAPEIDRMIEETQKTPFTDHRVTRTRIPQVKLRIPIYKGGSDPKQYMTSFMTTVAKAHFLD
EIRDIGCCQLFVEGLFGNALTWFSRLEANSIDNFTQLSTAFLKQYRVFIQPGASSSDLWSMTQENGETLNDYLGRFKEIL
SRVTITDEAAVAAFRKGLLQGSPLRKDLAIREPRYLDDALHRASxYAFLKEEDAKLACKSQPPKAKEKERGDYQEPRQHY
DPKANKRGTIFAAVDSEDRPQQPAKPNGSKNSYCRLHQFGGHSTKECKHLLNILLGKYKSGEVEAVYHPKNGKNKRKSDS
KQSQAEPTHEEPHVDHQLLLEDDNVEEVRVPENELPGPPKRWREQQPQRAPNHPRGRISMIMAGLSDDEDSVSALKKRAR
QVCSVRVAPEAEPLSQEPIIFTSEDASGIRHPHNDALVVKLVMEDFDVERVLIDIGSSVNLMFLKTLLKMGISxSKIMPK
IRPPIRYDGEAKMSIGEIKLQVQVGGITQKNKFVVIDSEPIYNAILGSPWIYSMKAIPSTYHLCLKFPINTGIFTLYGNQ
KVSQTCYVIEKKQRKKDFHWDDKCENAFQELKSYLMSGAILAKPEVRETLYLYVSVSSSAVSGVLVRDDRGNEKPIFYTS
KALNDAETRYPTFxKLALAVIKAARKLRPYFQSHSIVVFTDHPLRIVLHSLNxSGRIAKWAIELSEYDVEYRSRPSLKSQ
VLADFMTEMSPDVIDVTLDENWTLYSDGSSSLQGSGLGILLQSPTGEILEQSLWLQFKASSNEAEYEALLAGLRLAKGLG
ARQIKAFCDSQLVVSQFSGEFEAKNERMRAYLSLVHELSSQFHQFALVKIPRNDNSAADALAALASSANPDLRRTIPVES
IAKPSIEPPNSTCVIVDPVTAMDIDGNAINAPGIEEDPEPSDWxLPIKMYIADGIVPTDRWETRRLKTKAANYMMLDGEL
YRRSATKAFLTCVDQKEALTLMKETHHGDGGNHSGGRDLCLKIKKDGHYWPTMLRDCEVYAAKCEPCQRHGPMKNVPPEI
LCSVTVPYPFMRWAMDIVGPMPPSGSKRFLLVLTDYFTKWVEAQAYHKVKSRDVVAFIWKNIICRHGLPYEIVTDNGKQF
VSLITRNFLAKWNIRMSNSTPRYPQGNGQAEATNKMIIAGIKKRLGPKKGNWANELDGVLWSYRTTPRRPTSLSPFSLAY
GIEAMAPNEAGVPTLRRSMMSNDHELNDQLLGDHNDFAxELHDQAAIRIQNYQNAAAKYYNRNIRERRFNVGDLVLQEVY
SNTEEKNAGKLGARWEGPYLISKVLHPGVYLLKTMKLKEVENPWNAAHLKRYYTRLGVS
>Gypsy-1_ACa_gag#LTR/Gypsy 57-1076 [Ajellomyces capsulatus]
MAPRTRAGTAPSGGASTSSPRARTPLPRQESEIPEPAAHLGMGPPAALPPPRPLHSYVYHGDKGIKVGDPPNYKGKTLSE
FHSFTRALERKFRLNLSQFNTHEVRVIYAASLLEGTTATTWATKERELERSNAAMTWEEFKNFLLDQIEDHRNRAFTAAQ
RFNSLRQRDDENPSDFNARFEEYWEELSDDLNLLKTQLYLAKLTHKVRTTISQYQSPPTNRTELVNLASRIYLNNQHHEK
KGDKTPSKQPTTGSKRRHDGSGADDAKKNSKRSSSSLTAKERQNRLDNNLCFNCGISGHFASDCRKSKKGRNRGDTSSKT
TPLLANVSTEDKKERPKED
>Gypsy118_DR_pol#LTR/Gypsy 986-5140 [Danio rerio]
DCRRTTRAFKLIEPTVQAQTVGTSSSGQLEKKDHLIGQCPVVQVEIQGVKTSCLIDTGSQVTTLTESYFKKHFETEGPTM
YPPIQKFNLVAANGLVIPYIGYIEVDLNICGKVIPKRGVLIVKDSHGSSYPGLIGMNVIKECREFLMTKTGDDYLGSESE
VQVKVWRQMFSVCEDLLHFADESGQISSIYWPQGRKKIIPPQSEMVIEACARVRPDKRDYVGLVEPCPDVLPGQLLVARS
LSTVSKGRVMVRILNLSPVAVILSQRCRIGQLSDVELCSSGLQGNVELRSLDDDTVEVSVRQNRVQDDEQVQMPWPVAVP
LDPQQFSLKQQEMISGLLAKHQKVFSEHEEDYGFTDRVLHVIPTGDAAPIRERYNRIPPKLYQEVRGLLNNMLENGIIRE
SYSPWAAPVVLVRKKDGTLRFCVDYRCLNGVTHKDSYPLPRIEESLASLKKSTVFSTLDLAHGYWQVGVHPADKEKTAFV
TPMGLYEFNRMPMGLCDAPGTFQRLVESCLGDQNFETVLLYLDDIIIFSSSFEAHIDHLDLVFSRLGDFNLKVKPTKCSL
FQSKVHYLGHVISEGGVSPDPGKLQAVETWAAPQNITQLRAFLGLVGYYRRFIKDFAKIAAPLNSMLWGTSKRRTQPAAG
KAKRWAWGEMQESAFKKLKESLLQAPILAYADFQLPFVLYTDACQTGLGAVLAQVQEGKERVIAYASRSLRPTERNDKNY
SSFKLELLALKWAIAEKFRDYLAVSPFTVFTDNNPLAHLNTATLGAVEQRWMAQLAGFQFDVRYRPGRTNGNADALSRWP
GKETDGQSIEDEAVPCGEPGYVPSEVVHACVHAFVPVVKDQEKEPSKEREPQLTQEECVGPSLLDDWVRAQRADPVQSRL
WMYMDRGRGPGPRERAAEDRPTQVVLRQWGRLGTDRGLLCREVCDPKTFDKLKQVLVPQSLQNQVLEWVHDRAGHLGVEK
TLGLARRRFFWPGMTQGVEKWCLKCVRCNLHKTPANKVSAPLVSIDSDYPLQIVSVDFLSLEPARSGRCNILVMMDHFTR
YAVAVPTMDQTAVTTARALWEHFIQQFGGFDQLHSDQGPNFESRVIKELCGLYDIRKSHTTPYHPAGNGQCERFNRTLLS
MLGTLRDDQKENWDQHVAEMVQAYNNTPHPSTGYAPYFLMFGRYAKLPMDIMLGRGDGFSGTVGSWVHHHHKRLVTAYSQ
ARKQVQKAQLHQKKGFDRRVRGEPLLIGQRVMVLNKRARGKGKLEDRWERNTYVVISQPNLDIPVYVVKKEGGNCDERVL
HRNMLSPCKFEVTSHSENEVGEQAPALQVDPLNSNWCMYPWVGGCLTDLPAPVRENERTVMDNAETTAQTIQREGLSSPP
DVSVEGLRRSARATKGLLPQRYRI
>Gypsy-1_AMi#LTR/Gypsy 540..4823[Crocodylidae]
MQANAGTAGAQPAPAASPRLNTPVFSRYKDGDDPEVFLSNFENQARRWKLPKEEFMKHMAALVEGDMSVVLNSLPSESAD
NYDAFKDAVRSRFRLGPDYFRKKFRNTTHSRGRQWPICGPVWDSLLKWAEGAEADTMEEVLNLMALDQFYYRCPREIKTL
VKDRXPKTIREAAEIADQLLLNREGPDKKPPYFGKEQKGFQKGGKGGPGPKGERGPPPAERKAAPDSDKPPNSEKRGCYN
CGEPGHIRPNCPKLSNKPKPVRHATAVSSEGGDPSHSEGRACCYRITNPEEVTASHRTKITVNGRTLVGELDTGSSVSLI
NANLVSPADIVPGRTLTIQGVGSQPFEVPVTRPPIEWRGCGMCIELGVLEGAPVPILVGRDIMELEYLQREEGHLLELEP
YRVNVVTRQQSRKAKAGGVETSQGLVTQLATEAEGEEGETQTPSDCDQPPAIEETGDLEVGLSDSPREESGQSVAEETET
LGEKLKDIPEGEGALLTGAPELPADCLAGQEEFKQEVLEDPSLEELRQMAQEQETEFTPDKREQVVWDKGLLYRLWVPKN
HAETWEPRRQLIVPRKFRQQLLSMAHDLPCAGHMGRERTRQRLQANFYWPRIAQNVTDYCRSCETCQRTGKSGDKRKAPL
QPLPIIDQPFQRVGIDIVGPLRHKTHRGKKYILTLVDFATRYPEAIALTSTEAPVVADALTKIFFQLGFPSEILTDRGGN
FLAEVMKCLWECCGVKHLKTTAYHPQTNGLVERFNGTLKGMLKAYVDSNPNDWDEKLPHLLFAYREVPQESTGFSPFELM
FGRRVRGPLDLVREEWEGKISSTKTSVVEYVLSFRQKLTDMMKVARDSLAQAQEKQSAWYDEKARLRTFERGDKVMVFLP
LKTDKLQAAWEGPHVILDKLDDVTYVVARSGKKPKTVHVNMLKPYFNRSDAVFWISSVEGSPEDPEEPVMYGDWDGEAGI
EELRLPDHLPSQDKDKLLAALKDFETVFSNKPGKTNLAVHSIDTGSHRPIQSRPYPVNEKVRQEITREIAEMKGLGVIRP
SMSPWASPVVLVRKQDGSIRFCVDYRKLNAITTPDAYPMPRTDSLLDRLGPAKVISTLDLSKGFWQMALDPDAIAKSAFT
TPVGLYEFTVLPFGMRNSPASFQRLINNLLQGCEQFAMAYIDDIAIFSQDFESHLIHLTTVLGKIKQAGLTVKAKKCQWA
LSEVVYLGHRVGGGHIAPLWDKIEAIRDWPPPQTKKQVRAFLGLAGYYRRFVPGFGATAAPLHELTKKGSPDPVVWKQGC
QEAFDTLKAALIKQPILKAPVHDKPFYVATDASDSGLGAVLLQEHQETRHPVVYLSRKLIPRERNLSSIEKECLAIVWAL
NKLRPYLWGQQFTVLSDHAPLQWLQTMQNTNAKLQRWAWQLQEFNFTVEHIKGSQNVIADALSRKDSG
>Gypsy-1_DD_gag#LTR/Gypsy 631-1502 [Dictyostelium discoideum]
KAKNKIYFADNDLESLNISTLFEYIEITGENNGEYNEVKRKIIKYFLGSALTTFIQKSKIVENYNDLKKEMIKRYDMKKF
FKPEDELSKLTDQKFDKFMKYITAFGSLNAQINPPLTSERQIELFIRGVSDIEIKKSIDEGAPKLLDEAIMIARTKANSK
FKYDSLEFYNAGFTDKFIDKENRINNNVQDQQPQIQRQQQVIRPTRIPFPPSGKHPDYNVKQEQNNYANVKKHQYKNKPK
GKPLKCYKCGKLGHFANQCKEEVNTITEQVSFTTNQQDLKRVSPRMYSQIH
>Gypsy-1_CP#LTR/Gypsy 496-4290 [Carica papaya]
APSLIDPGFIERYRRLNPSTFSGGSSFEEAQYWLAETERAFETLGVIPEQRTAIASYMLVGEAVRWWELKRATLPVPVTW
EQFLAAFHAEYLPKHIQHLKELEFAQLVQGNMTVSEYAHKFLELGRHAPETLLDEGRKARKFQWGLRPAIRQHLLVMELE
TYSAVLAKAQIIERSFDTRPQLAGSSRPSAPLRRPAPTMPVQPSKRPRPAVQAPPQAMGAARGKICQYCGRDHGDRPCYR
LNNTCRICGSAQHYARECHRNQNQGRPPIQGRVYNLTQKDADADPDVVHGKPKKEVCIQEIPVVRDFPDVFPNELPGLPR
DREVEFTIDLQPGTQPISVAPYRMSRIEMEELRKQITELQDSGFIRHSVSPWGAGVTFARKGDGTLRLCIDYRRINKVTI
KNKYPLPRIDDLFDQLQGAQIFSKIDLRSGYHQVKVRAEDIPKTAFRTRYGHYEFLVMPFGLTNAPAIFMDLMNRIFREF
LDQFVIVFIDDILVYSKSREEHARHLVQVLQVLREKKLYAKLSKCGFWLEQTAFLGHVISKEGVSVNPEKVEAVLGWERL
TTVKEIRSFLGMAGYYRRFVEGFSSLAAPLTRLTKKNARFEWNENCERSFSELKKRLTTAPVLAPPSGSGGYTVYSDASY
LGLGCVLMQHGKVIAYGSRQLKNHEKNYPTHDLELAAIIHALKIWRHYLYEETFQIYTDHKSLKHIFTQKDLNMRQRRWM
ELLKDYDCDILYHPGKGNVVADALSRKSAGTLAHLMVSECRSIGATQQVRLRDLKRATCLSHLAVQLELIQRIKGAQSID
PALVTRKKDAEQGVNSEFQISADGLIRFRDRVCVLDDSELRRDIMTESHSSRFAMHPGSTKMYQTMRPRFWWNGMKRDIA
DFVSKCLVCQQVKAEHQRPGGLLQPLPIPEWKWEHITMDFVSGLPKARSGHDAIWVIVDRLTKSSHFLAIKMTDPLDKLA
RMYIREVVRLHGVPVTVVSDRDPRFTSRFWNSFQQAMGTKLSLSTAFHPQTDGQSERTIRTLEDMLRACVLDSGGHWDDH
LPLIEFAYNNSYQASIGMAPYEALYGRPCRSPICWEEVGDRRLFGPDLVEETTSKIVKIKKNIQTAQSRQKSYADTRRRD
LAFEKGDRVFLKVIPFKGISRFGRRGKLNPRYIGPFEILDKIGTTAYRLALPPELSRVHNVFHVSMLHKYNPDPSHVLAH
EPLPLREDLSYEEVPVSITDRESRILRNREISFVKVMWQNHTPREATWELESEFRAQYPHLFDQE
>Gypsy116_DR_gag#LTR/Gypsy 804-2177 (1 stopcodon) [Danio rerio]
MAEGGADSWLFEAGRGKYLMQYSNAKLGQSGMKVKSDDHSVKENLMAHDVNQIFPVTSTPKPGKLGTSSDRDVGDLNVLV
EELGRKIGESVTAKLLSEGGFAGSCNRNSTSSSQCANLDLSQLNVILKSDEKEPPVFRGDNLGRCDVQEWVDMMQLYLQK
RNVDIPNQADEIISHLMGRARDVVKVTLRSNPTLDYKSQPNLIYSILKQHFSNVSYSSMPLADFYGTLPRYGENPVDYWL
RLNKAADIADECLRAQGRCMDNLSSEVAMMFVRNCPDTDxARTFKVRPLEKWTAKDVQELLDSFQRDSKSRAITNEYAIG
QNAQISLHSCEHVNAGPEPVLACFKQGPSVPNDSKPHTKDESSLNRMADMLTQLIDILKKKEESVSEYVPAGKMREMTAV
GRKNCRICGDTAHTTIDHCKTHRLCFRCHTAGHSKRDCTKKFATTRFSSDSPGDQEN
>Gypsy76_DR_gag#LTR/Gypsy 18-1034 [Danio rerio]
MNPAEASAQEMVSIVAQHDATVKRHEAALIQQEALMEKHSQLLSELMTSMRQLSDSLRQRPTTSPEEASTPTPVIHTPQP
QFEPRLPPPQRFSGDPETCEGFITQCDLTFKLQPSTFPSDQAKIAYILTLLSGKALAWATAIWNAKSPCCTNYSAFVKEL
RRVFNHPLSGREASKHLLTLCQGGKSAAEYAIQFRTIAAGAGWNDEALIVCFQNGLSEALKDELATRDPAKTLESLIDQA
ILLDNRLRERRLTPCYVPSRSPNLPNTPYATESPQFSEPDSPEPMQLGRARLTLQERTRRMKSRLCLYCGGSGHFRSDCP
ELKENSPSQAVRRELSRE
>Gypsy69_DR#LTR/Gypsy 17-4245 [Danio rerio]
MDPAEVSQMQAAFAYQSDVLKGYQEQLQQLSNINDHLTQYIRSLPAPQSSPVRLALPDKFDGSPEQCRGFVRQCKIFFTS
QPDTYALDTQKCAVLMSLLTGRALDWASAVWESDAAIQTSFNHFISQLQEVFAYPEGGQDISEQLLNLKQGSRTAADYAI
EFRTLAAQSGWNDVALKAAFKQGLNTKIQTELACKAVDLTYSEFITLAIKIDNLLRSNSRSHKQRTTQLEQAQTGLDTPE
PMQIAATRLSTEERDRRQRENLCFYCGEEDHRTASCPHKAKKFSRTKYSVSTIEFPTFSKHSFLLNCELSYDTTSQCVSA
LVDSGSAVNIISQELTDKLKIPTSPCVPVINITTIDNGTIGSGIKAITQPVSLSIGLFHEETITFYVIPSCKYEVILGHP
WLTIHDPTISWNQGELTHWSTHCQQRCFSKILSLPCLSTSIESPEVHSQVTLPQPYREFAEVFNKSKAAQLPPHRSWDCA
IELLPNMSPPKSKIYPLSRPETQAMETYIEEALSSGYIRPSTSPAAAGFFFIEKKDGGLRPCIDCRGLNNITVKYRYPLP
LVPPALEQLREARIYTKLDLRSAYNLIRIREGDEWKTAFLTTRGHYEYLVMPYGLANSPAVFQSFINEVFRDLLNKCVIA
YIDDILIYSPNLEQHIKDVRTVLTRLQENQLYAKLEKCEFHMSKTSFLGYIISHHGVEMNDTKVQAVTGWLLPKTVKELQ
RFLGFANFYRRFIRNYSLISAPLTSLLKGKPSKLKWNPETVKSFEKLKTSFTTAPILKHPNPELPFVVEVDASDYGIGAV
LSQRHGNPGKLHPCAYFSRKLTAAERNYDVGNKELLSMKAALEEWRHWLEGAVHPFQIITDHKNLEYIKSARRLNPRQAR
WSLFFTRFNFTVTYRPGTKNHKADALSRRYDQGQLDQTPVSILPPSVVIAQISWDIMEEIQRGQQDDPPPPECPPNRQYV
PQTLRLRIMQWVHNSLSSGHPGISRTLNLVRNAFWWPKMNQDITTFVKSCAVCAQSKTPRELPSGLLQPLPIPHRPWSHL
SIDFVTDLPNSNNYTTILVIIDRFSKACRLIPLKGLPTAMETALELFQHVFRGYGIPEDIVSDRGPQFTSKVWKAFCKQL
DINVSLTSGYHPESNGQVERLNQEIGRYLRTYCSREQDKWSNFLPWAEYAQNSLTHSSTGLTPFQCILGYQPPMFPWSGE
PSMVPSVDDWVQRSEEVWNSAHVRLQRAIRTQRINADQRRRPNPNYQPGQRVWLSTRDLRLRLPSRKLSPRYVGPFKILK
RINNVTYRLELPADYRISPSFHVSLLKPVHPTSDSGTSNPEPPPPLDIEGAPAYAVNEILDSRRRRGQLQYLVDWEGYGP
EERSWVPSKDILDPSLTQNFHQRYPNRPAPRPRGRPRRCTPGGVPRGGE
>Gypsy77_DR#LTR/Gypsy 480-5609 [Danio rerio]
MAHTPPSPFACVEIDPPDIATPNWPHVQQMIQQPHSQPQQVSTFHSTPTQFHQTPLQTQVHFGSPPPSITDPLSSSATQF
HQTPLQTQVRFGSPPPSITAPLSSSPHQDSMQLCSVAKATPSSASTQHDLPVFLPTPGREIYQLSTQVQGNWDYILNCLK
QQDEDLKTLTQEVATTSSQFQSKFETLTTKIDSNHQHLQTVFATQKQPESENSGQLIKAFKVMLEDNLKQCELALAAEFR
FMVEQLQLEVQRDIVNLEKNSQKNYDQLSQSISQCNSQVNALIQSIKELKSDVVNIKPFAQPVTALHVMTQTPLLSTDPE
DDAVLPSTDTLPLHLPHPTSTIPKSDHLKLTFPTFGRPSDDGDPLSYLNRCYDFLAVHPLNDTEILATFRSVLYGTARDW
WEVARANIKTWTEFETAFLSAFLAEDYEDELAERVRTRVQGTKETIRDFAFSYRALCKKWKPSLSENDLVKMILKNINPY
LASQLRSRVKTVDELVKLGHQLEKDLAQQLLYEGRISSNPIAPKPTSNRPLERSSVQCWRCKGQHAPGNCPQYSSASVST
QRSNQPVGDKRNIPAQHQRSAPSNNSISVKTATPITENPRHPPTYEFIPQQLIVPITIGTWSGKAIIDTGASYTLLHESL
WSALTSLDGLHKWPHGPLYLANGETAVPLGWTNADISLHNMVFPTPVANLPSTALTYSVVLGLDFIFTSGLQINVAGGNY
TFTTAPNQVYPFQPGQASIPEKTYLHQKKKVHRKHASQVLSLFTSIPPPQRLFQLPDNSDDKTLIQALVDNSHLHPEEKY
QLHQLLLKNPQVCTSQLGRTTVLQHRLYTVHPVPIRQRAYRLTPEKQAIVEEQVQEMLMNGLIEPSHSAWASPIVLVPKK
DGSMRFCVDYRKVNAITERDAYPLPNITEILESLSGAAIFSTIDLNSGYWQVTMEPGSESKTAFIAPSGLYHFKVMPFGL
KNAPATFQRLMESVLGELRGKICFVYIDDIIIYSPSITQHLNDLQSVLTRLYRAGLTINLKKSKFCQHELSFLGHVVNTQ
GISADSTKVEAIKSYPVPKNIKDVQRFLGLAGWYHRFVPNFSQIAEPINSLKKKGRSFQWTPQCQQAFEKLKACLTSPPI
LGHPDLRLPFVVYTDASDCGLGAVLTQRKVQGQEEVIAYGSRTLTKPEVNYSATEKECLAILWAIEKWRHYLEPKLFTIV
TDHSALQWVLNSTKTTSRLIRWALRLQKFDFVVEYRKGKLNEAPDALSRIHPLPGCHVYSAQQEPEFPISTAEIWEEQHK
DPDIIHIFKTLADKDSSMHEQFEVIDDKLYHRTLLKEGHKHYRIYVPATLIPNLLHHYHAHPLSGHLGIYKTYQRIHHVA
FWPAMWTSIKTYVKRCVRCQTLKNESRKPAGKLQQTTTTRPNEMLGVDIMGPFPCSPRRSQYLLVFVDYYSRWVELFPMR
DATAQTVAKFFREEILTRWGVPDFILSDRGTQFTSAIFSEVCKKWKIKQKMTTAYHPQTNLTERVNRTLKQMISSYVDDN
HKKWDQYLPEFRFAINSAVQETIGMTPAELQLGRKIQGPVDKLMHGHNLSPDSPAYEVAEQLSTLKMKASECSKKAMARQ
LRNYNKTRREVSYKEKDRVWVRNFPQSSALYHFSAKLANKWKGPYRIIHQLGPLNYRVAQENTGEDVRTVNVCNLKPCFP
TAEELEKQEKEKLKAIFLQPLEEEEFFGF
>Gypsy106_DR_pol#LTR/Gypsy 1628-6217 [Danio rerio]
MFAETDVGKREEVAGEGQPATVNSSKPTDIATMSATPCHSDPKKRVAQLIGNRCTVSCNINGVPIEMLLDSGAQVTMVSK
TWVDKASPHVKIQPLHSLLSSQSLEISAANGTEIPLEGWAEVDLQISSRHHGSITISVPLLISQNCHCPLLGSNVIAEII
KEHGNTVDVTAILTDSLSIPKSSIGTLVSLLQIPTSVEPTPCVVRSSKKGVTIPAGKIYEVRCRVKGAPGNCTMLFQPLT
VSTCPVGLDLFPSLVDVPLGSSKCVRIPIQNSTQHTIYLTQRTVLGTLEEIADLKPVLNSKHKNIESIQTCGAQLCTNSQ
SYHNKELDREAVSKVRDKWHPPVDVSHLAEEEQRIVRQMLYEESMAFAKDEADIGCIPELQLRINLRDDTPIQKSYNAIP
KPLYREVKDYVQNLLNRGWIRKSTSAYSSPVVCVRKKDQSLRLCVDFRGLNNKTIPDRHPLPRIQDLLDNLGGNSWFSIL
DQGSAYHQGFVEESCRHMTAFSTPWGFYEWVRLPFGLTNAPAAFQRCMEGVLVNLRDECCFPYLDDVLCFSKTFQDHVED
LRKVLCRLQECGVKLRPTKCELFKRQVRYLGRLVTNEGVQVDPKDLEAVLKLKEKKPKTVGEVRALLGFLGYYRSFIQDF
SRIAQPLFKLQEHPEGSRQRPSLVKSTKRGKGGDHLPSKTPICWSSEHSAVVSRLVDMLVSPPILAYPNFDLPFVLHTDA
SNEGLGAVLYQEQSGKLRVIAYGSRTLTPAEKNYHLHSSKLEFLALKWAVCDKFRDYLYYAPTFTVYTDNNPLTYVLSTA
KLSAVGHRWVGELADFHFTIKYRPGKTNIDADTLSRFPVRLTDHLREYTEIVHPEVISTIWQGNKAEREEQVPQAVALQI
RVEEDLSAACIPVFTPEDIRDAQNRDDTICEVVKLKKNGWTPKDKGQSLVSVGAQRLIREWNRLKLREGILYRESGPNQQ
LVLPTSLTSMVLKHLHDDMGHVGADKVIHLARQRFYWPYMQREIEDYVIRQCPCIKQKRPTVPEKAPMGSIVTTAPFELL
SVDYLHLEPSKGGYEYILVLVDHFTRFAQAYPTRNKSGKTAAERIFSDFIPRFGYPEKLHHDQGREFENTLFQRLQQLAG
ISHSRTTPYHPQGNPAERLNRTLLQMLRTLQEEKKAEWKDHLPNLVHAYNCTRHEATGYSPFFLLFGRHPRLPIDLIFNL
NSDQHVRTKQQYAQTWALRMQEAYRIAAENSKRSSEKGKRYYDQHVRGAVLQPGDRVLVRNLSERGGPGKLRQYWEQKVH
RVIERIKDSPVYRIQAETGDRTFRVLHRNLLLPVSDLLVSSEEEDKGVGKKPPRQKCHLRRRETAESDISISDDEENHSY
HLRPLPVYERKTVRHHLPDPKHHCGLRAIAPEYQPLSQTSECNDATQIDLRDSLKTSEIRPTPTYATPPPLVESQEVHSD
NVVEDGIFDPLATDPTTVLAPVREMEQQLRRSTRQVKPRNLLMYDQPGAPSYQPWRLGANAMCCGFYPMPILPVSPEVSY
YPHPVAWVY
>Gypsy80_DR_gag#LTR/Gypsy 861-2222 [Danio rerio]
MEKFNTTGLGRGRGVFQTNSTFSMGRGFPTHPLTSTPRVRSSSCEANSLNGPDENEWRSPAVERSIPVDLLTTVVKEIGK
SISENIVSCLELRTTGCGDGSRVGHTGTGASFDAQNLKLMLQSDVKEPEYYRGDGSDKCTIHEWVELMSVYLRKREYSQE
CQAEEVLGRLMGRARDVVKIALRNYLKTDLSTGPGPIYDILKQHFSEAAYSAMPLADFYATLPQKGESPFDYWIRLNRAM
DVAEDCLKAQGKKLDNSSQEVSVMFVRYCPDPQLQLVFKCKPQQHWTAAEIQERLDEFQREAKYTQNQLLFLAQKQEAVR
PPLHYDHNEASSLESSIVKASIPQVQQSSVHNSVESLERLISRLERVLEKVPGEGAKSAEIPVRTRVKTRADGRGECKVC
RDVNHTTSHHCRADGLCFICYAPNHTRFECPTAVDKGRVKSQSTAYPSGQQGN
>Gypsy-1_DG_gag#LTR/Gypsy 684-2027  [Drosophila grimshawi]
MVRAWVYNLKKDEVLKYGAEFEVELSGTLDAMRRQFGDWVSTHENRLPYSTRLEELAAIHGRQSPAREPENGADARESTN
INFAQLSIPATSAAARTRDANNTLWGVASTPQPQRRVSINEQSAPTMSQEYPRVAKQVREWNFRFDGTTKPLEFLEQVEW
SADTYGLNLNLIPRAMPELLQGMALKWYVANNQHWTRWVAFVQSFQEYFLPRDYFENLKDEVTRRRQAMHEPFKVYMVEM
QTLMRPLQYTAEKQLNKIYNNSLPDLRAYARPYQFNNLAELMHLAEAFEELEADREKLRRQSRMEQPRPMEPPRRRMEPP
QMRQEAPQYSHRESAQRYNRPRFMAMTDNQNTHNQAYQERTEFDTRPRPAPRTRRDNIQTHISNPARACRFCGQEGHFAM
ECTNPMLEYCWLCGRIGVRTSVCCPSGNEHRRPPPRGEREPNRSAPRR
>Gypsy-2_DVir_pol#LTR/Gypsy 2214-5504  [Drosophila virilis]
SIASDPDFNKDTLTPDSTFTPDLSKPCQTKLKPYHVRLHEYLDRRATIFASEPKVEFKPRSSERLRNLWTQRRSLNKHRI
SAIDHRSNDVRPFTNLEIFNQHYLALLDSGATKSVIGGSLANKILDSKIDFNKIKGDVRTADGQKQHVVGSISIPIVYNS
IANNFEFLIVPSIKENVLCGIDFWRAFGISVHHSNTLNSVDFEEVESNQLSLTLAQKKRLQSVITSFPSFEIDGLGKTTL
VEHIIDTGDAKPIKQRFYPLSPAREKLLCEEVDRMIKLGVIEEAPYSAWSSPAILIVKPGKVRFCLDCRKVNEVTSKDAY
PIPNLDGLISRLPPVHCVSKIDLKDAFWQICLDESSRAKTAFTIPNRPLYQFKRMPFGLCNAPQTMSRLMDQVIPYDMKG
HVMVYLDDLLVLSQSFDEHLIHLAEIATRLRRAGLTINIRKSNFCLTKVEYLGYIVGEGTLQPNPAKVQAVADFPVPSTK
RQLRRFLGMTGWYQRFIPQYSSIIFHLTELLKGTSFAWNDNAQISFEEIKRKLSSAPFLINANYEKPFIVQCDASMHGVG
GLLAQCDESGIERPIAYMSKKLNKAQRNYSVTELECLAVVLAVRKFRMYIEGHDFKVVTDHATLRWLMNQKDLSGRLARW
SFKLQGYNFSIEHRKGSENVVADTLSRAFEPADEVAAVDLEVYPEIDLSSEAFRSNEYCRLKNNIIRSNLPDFRVVDDYI
YFRNEPSASSVDENMEGWKLFVPSELRLNVMKAAHDQPTSAHCGMAKCLECIRRHLYWPNMVVDVREYIRHCEFCQTSKV
PSRCLKPTMGNQVVSERPFQRLYVDFVGPYPPSKKRNIGIFVILDHYSKFTFLKPIKRLNAKVVVDILQEDIFDCFGVPE
IIVSDNGTQFKSLEFSSLLSKYGIQHMCTGVYSPQANAVERVNRSINAALRTYIRSDQSLWDVYISSINSSLRNTIHQSI
GISPYFVVFGQNMIKHGNDYKLLKSLNMLNEGQLKLDRADEFPLIRSNIQKHMDKAYEKNLRTYNLRTRPRSFEVGQIVI
KRNFVLSNLAKHFNAKLAPVGTKARIKRKIGNCLYLLEDLKGKELGHYHAKDIWECK
>Gypsy-2_DP_gag#LTR/Gypsy 112-1155 [Daphnia pulex]
MAERGARAARRAAVAAVNPDRPEDVEHHHHQGPAQRIGGIAREENRVRRKEREPPLFRGEAHEDAVDWLSRYEEIAHYNE
WNVDEQLHNFGIHLEGVARRWYLSLIPAPLTFQDLRARFLVAFKPPNYDLDLETKLRSRFQEEHEPVMTYCHDVIYLCSR
VDRNMGEALKVQHLLRGLKRPLVQKVYPFLDPEVHTSQDFMRLVQIQCQADLLANQPPLVSSCTPPAVLMIPPQPPILPQ
ASPFVTEDRLKAFKKELATEFRCELSSTLSSMRKEISNDVRDVLRESRNPKPFTSKRSRDGQPICRQCHQPGHIARECDQ
RKCFKCNLPGHLAKSCPTPSSSVKPSN
>Gypsy-2_PI_env#LTR/Gypsy 4921-6144 Perhaps nothing but an ORF. [Phytophthora infestans]
NQLKGGLKDLHVFPYYIPSKLKLLLHQASLPVTRRLRSAFAVATHVPKLKLNTTNPLYTLNPKVVRERRHFHRWIVVSRV
PIKHDQASIGTSLHHDETVTDVILARAHQVRTRNQGFKEVVQSRNTPDGFMKNIGKHDAVVQRNTLALKRFPELRDVFAR
YAKRNRLGTSFFILIPHLHGNQIGPTKMVQRAAERIHETRTSFGSTSTNVVPSHECYFRTRSLPLVDILHHVPRRFLVQQ
LHPDPAHLQRTTLPLNKIAAVRRFPFDVKQACNSSRVRIIPRSIRIIVVAMVRSWMSLRSFRKRKGMPVRRLIATTKPSA
LRPLGVLLIFVVKQSHLLKRNILSCNAIITSIISRNITINVISTQPFDRDLVDELLEHGGRRRRRGIVRRSQRGANRRRR
RTGRHET
>Gypsy-4_AA_gag#LTR/Gypsy 139-1032 [Aedes aegypti]
MAIEEASGSVSGTANNMKLEDVDSKEPTVIAKISFPDFDPDDIETWFMCLEAAFSVNSIRNDKLKFNAVIVALCSRAKFV
HTVIANCNATNVNDKYDRLKAAVLAHFQPSETQRLTSLLSGMSLGDQKPSVLLSEMRRLGGVGCTDNVLSNLWLRALPNT
TRSIIAAMPTASLDDQAKVADKILEAPREQIAAVQKPETSSTSSLEQRIEALSRRLDEALSGNFRGRERHSSRARQRSSG
RRDGTPARSKIPRRWICWFHYRHGAQARKCEKNRSENPNIKCIFFDGNVEVYTRPREN
>Gypsy-3_HM_pol#LTR/Gypsy 730-3699  [Hydra magnipapillata]
MASSILPEMTLPSLKVKINGRLRTALIDSGCSITVVHAESAHGLVLKSQKLITTLGGTVQVLGEMVINLEIDGIHRMVNS
LVVKEKPFGFDLIFGMNAIKKFGGVIIYGNKNCNVRMLACDKAKCGAVTTTRKNENEINELKIDVINTTRKSENEVQKIK
CDVKNTTRNEENERNEIKHQDFTAKFDGKKWTASWNWNKEPVIDNTICEYKMNQEHERSYRKEIREWIDSGILVPYNELI
LGPPKVLIPLMCVVQENKDKKVRPVGDFRALNEFVNCHTANADVCQEKLRCWRKIKNAKILDLKKAYLQIHIDKKLWPYQ
TVIINGQRYCFTRMCFGINVAPTIMTTILRHVLNLNPTVKKACDNYIDDIFVDESVETAKNVAKHLLKFGLQCKPPQDLE
QGRVLGLRVERNKNGELIWKRDNVVQFESLNAVTRSQLFSQLGKLIGHYPVAGSLRLQASYIKRLAGNIPWCDFISEDCK
EKLKELLYRVEKEDPVGGKWLVPVNGKAELYCDASSIGLGVVLLIGGVVVEDAAWLRPASDTHHINISELDSILRGLNLA
SKWGIKELTVYSDSKSTVGWLNAVLKEEYRVKTRGISQLLVQRRLNTIKEVAKDIQIAVQWIPSEINLADRLSRIPQKWC
RTVCAAGLLEQKDIWKIHSIGHFGVARTLQLCLRNNQNVSRKEVSAVIANCNQCNSIDPYSVKWKNGQLSVEKNWNRVAI
DVTHVGAELYLSMIDCGPSRYTIWRKLATKAAAEVVGRLEEIFSLFGPPVCLLMDNEFRSNTLTSFAEEWHVNLEYRAAH
RAQGNGIVERIHRTIKRTVARSHCSIALAVLLYNETISSNCTESPSKQFKKRSTCFIPGVDTRRKVDEKGVSKKFKVGDN
VWVKPTQETKCDQPWIPGVVRKQNTLSFDVETANRVYPRHISHLRRRTDVQSSNESVNDVFYRLNDKTDNVKGSYNDDVA
QVQNDSQELNVLQVTRSGRTVKPPQRLDL
>Gypsy-2_AA#LTR/Gypsy 20-4159  [Aedes aegypti]
MANPGEIQAGGDGAAAGVPAVLPPPTFAIESFDKRKLKWMRWVERLETAFLIYGVADVQMKTHFLLHYMGSETYDVICDK
VAPDSPRTKTYQEIVTTLDDFFSPQPLEISENFRFKCRRQGDKDAASADETVDEYLVALRRIAVTCNFGAYLETALRNQL
VFGIKRNDIRSRLLERRELTLKDARDIAVSMELSRKGGAAIEGSSTRQEVHAVQHPAGKKEKQNAKNKSAGKSANDGSCY
RCGEKSHFANACKHKQTVCSYCKLTGHLAKVCLKKSAAAKSDSRSTNKSHSVQTNYVDQSGDRQRPERVEVREVCTVESS
SRCKKLLMDVYVNGKCVRFEVDTGSPVSIISAEDQNRFFPGARLCKSDTDLVSYCNTSIDVLGVFNASVEYNGKTMKLPL
YVVNSGKHPLLGREWLSEMSVDWSCVFQGPIAVSAIAATASPCRDVALRALLEKFPKVFDASIGRISNVQANLPLKKDAR
PVFLKARKIPFNMLKTVEDELEKLVAEGVLTKVNSSNWATPIVPVKKSQNRVRICGDYKQTVNPNLIVDKHPLPTVDELF
ASLAGGKKFSKIDLVQAYLQLEVAPEHREILTLSTHRGLYRPNRLMYGVASAPAIWQRQMEAILQGIEGVSVFLDDIKIT
GENDEVHLRRLEEVLRRLNECGIRVNKDKCEFFVDNIEYCGYLIDKDGIHKIRKKVQAIQDMPRPKNVDEVRSFVGFINY
YGRFFQNLSTVLYPLNNLLKNDVPFRWTKQCEDSFRKVKEQMQSDNCLVHYSPELPLLLATDASPXGVGAVLSHVYPDGT
ERPIQFASQTLSRVQQKYMQVDKEAYAVIFGVKKFFQYLYGRKFTLLTDNQAISKIFGEHKGLPVMSALRMQHYATFLQS
FDYQIRFRKSSNHSNADAMSRFPLEKTDPENEIEESDVVELSQIDTLPLTAAELGQVTAEDQTVQKLLQGIKHGQLVDAK
DRFGVEQHEFSLQKGCLLRGIRVYVPAALRKRVLEELHSAHFGTTRTKSLARGYCWWPGLDRDIEEMVSNCADCQSVRAE
PTKMDLHCWETPSAPFQRVHVDFAGPFMDTYFFIYVDAYSKWPEVQICRSTTAECTVSMCREIFSKFGIPSILVSDHGVQ
FTSEVFQRFLKMNGVVHKMGAPYHPATNGQAERYVQTIKQKLKALKCSKSQLNLELCNILLTYRKMIHPSTGKSPSMLVF
GRQIRSRLDLLLPKNETSSKADIIVRQFLDGDRVRVRDFLSKDKWKFGRIAEKLGKLRYAVRLDDGRIWERHIDHIVGVG
ADLQDVSVDTPQEEEFIERYEPNLTASSAVDSAADAVVPALPQAETTNATPVISCPNAATAPALAPTPERFASTEAGRSE
STVPLRRSSRTVKPPQRLNL
>Gypsy-1_DSe_gag#LTR/Gypsy 151-1377  [Drosophila sechellia]
MYRDTGNISSDEEVLELLHRKVPEINRIEISSNSRATEMQAEQIANMEAAIACALQRQEELFEAKLTAIMGELSLLKNKK
PKIQTFQEIELNPNIECSEPLDMVKSVPEFDGKQENYVSWRQAATAAYKIFAPYEGSSRHYQAVGILKNKLRGPASAVLA
SFNTVFNFHAIIARLDFTYADKTPAHVIKQELSLSRQGELPLLKYYDEIERKLTLLTNKTIMTHDSAAAAVLNEQHRDDA
LHAFISGLKKSLKIAVFPAQPRDLPSALALAQEAESSNDRSIFAATFARHNEERAYRPNNQKQTGWKSSQSYGEPNKNSG
AIKKNPHFVRTLKGTNHQSGSFKQGPPNSAGSGQSQPAPEPMEVDPSFRSKQTTTWQRGRSARSQQKINFMPEENTDEED
YEPLLRQAP
>Gypsy-1_DGri_pol#LTR/Gypsy 2440-5528 via tfasty with Gypsy4_Dpse_pol, 1 frameshift. [Drosophila grimshawi]
MRKFWQSKRALNRCLINSIVNKSNDIRPFINIDIFGQDYLALLDSGANKSVIGGYLAKRVLSENFNVDKSKGVVRTADGQ
THPVAGTITIPLTYNSTQADLEFLIVSSIRTDVICGMDFWKKFGISISSFGDINVSAIETEKLEDDSTKLDLSSFQKSKL
KAVIDFFPSFENNGLGITTLIEHTIDTAEAKPIKQRFYPLSPAKEELLCKEIDRMIQMDVIEEAPSSPWSSPITLHIKPG
KVRFCLDARKLNAVTIKDAYPIPIMAGLLSRLPPVYCISKIDLKDAFWQICLDKESRAKTAFTVPNRPLYQFKRMPFGLT
NAPQTMSRLMDLVIPYQLKSNVLVYLDDLLVLSDSFESHLLHLSEVATQLRKAGLTINVQKSQFCLRKVEYLGYIVGEGT
LQVNPEKVAAVKEFPIPKTRKQLRRFLGMTGWYQRFISRYSSIIFPLTELLGKNLFTWNDQAQTAFEEIKMALCSAPCLV
HPQYDKPFIVQCDASSYAVGAVLAQCDESGHERPIAYMSKKLNKAQRNNTVTELECLAVVLGIRKFRMYIDGHRFTVVTD
HASLRWLMDQPDLSGRLARWAISLQGYGFSIEHRKGSQNVVADALSRSFESVVEVASLNAEVLPEVDLQSEAFQSAEYCA
LRDKFKVSKMPDYQVIDGYIYHRKDFSDDSSYQGNDSWKLLVPESLRNSVICSAHDQPSSAHCGTAKCLERIRRHLYWPR
MVVDVRNYISDCDTCKITKYPNRSLKPPMGARITSERPFQRLYFDFVGPFPRTRKGHIGIFIILDHFSKFTFLKPVKKFT
SNVIIDYLSENIFPCFGVPEIVVSDNGTQFKSRVFDDFLLTFGIQHIFTGAYSPQSNAAERVNRSINAALRAYIRVDQRE
WDTFLSRINSSLRNSIHQSIGYSPYFMVFGQHMISHGKDYKLLRNLELLKDSTARLPRADEFQKFRADVDKHLKKAYDRN
QRSYNLRSQTRAFEIGQEVIKRNFSLSKAAANFCSIGTKARIKGKLGRSIYLLEDMNGKELGNFHAKDIW
>Gypsy-1_DVir_gag#LTR/Gypsy 1785-2945  [Drosophila virilis]
MDWSQIVEKIKRHRENFDKSYKCLNKSAPVLRPTIIKHTEILVYEYNEIRSLVTECQNKLTSLHRVQTSDVLQRLRDNLV
NLNKKYDLQLYLPSVLNTPVTFDKSLLTNDQIEDTKLVNMAQTVVEFIKLATSLIPEFDGKPENLQSFLDSLNLLETLKG
THELTAVSLIKTKLKGHARNLISNEQTIAAIITQLSNAVKGESVEVVSAKLLNLQQKNKTANQYTQEVEKLTKALEGAYI
SEGLSQSLANKYSTTTAVKAMTQNCSIDKVKLIMQAGTFTNMNDAVSKFVNSCTEITGQSNTVLYYRRGANNNNRGGRGY
NRGRNYNHNNYNRGGNNNNNNYNNRGGRRGQNRGRGRGNSNQGYNSNNVRMAQNTPENSQNPLGNNQ
>Gypsy-1_MI_gag#LTR/Gypsy Gag similarities only in first half 1526-4081 [Meloidogyne incognita]
MEEEVGTDDDMHTADEEGKTPIKKVARQLNERELQQKLATLEKEIAKLGINRMREGLPLPEFYSGIEDFEAYLRRFNKIA
TAHQWSGTRCTQILPLYLLEEARAIYDSLGADSKNTWKGLTDALAIKLKKLNTKESARRMLTNRKQKSNESIIEFAQVIR
GLINKAFPENSFKKVVLETEEARTQRIKDWRDDLAKDYFKNGIKLEIKEKLAFITTDTLEDTINQAKQIEEVQNALKEDR
MRSYQNKLSEKAILEVNAVRDQVNELKEQVDRRMPTQPVRGNYNNWRGNFNTRGNWNQRNNYNREQYSNNRNNFQNYNNW
RGANFNRGRGTVRWGQRRGAGSFNSNKIPINNPRNFGAGASNSARINSLAMPYITIMMLLMFCQGICGQYQICPKDKIGE
SIDFPSPQDCTLSLTHQMEIKNVTLFLPKLVPRYFPIYRCWMERQVKCTDAILFYREDLPVKKERFSLSPESCWNLYKST
KLKRINEVLWSIIFYNDLKYAWFGQQCVMDRHYFLEEGEGALMNKRFETSFGVSKSVEAHTINGSFTDKEKLFSVIVWNA
PSEDYIYTHYSFGPVQAEIFYKNNSINGLVKINELQYVFAPSENITKSSDVLGVPDEAWPMDNDVYILILNTTERIIQKR
QVTKKQNFRRTTTTTTTTTLIPPTIKPIKTTTRPILTTKKPILSTTTTPIHNKRMHTTPTIDPNYRLPVQQQIKNNYLKG
DRGLPGPDGRPGAPGEKGDMGYTGPRGMKGAPGEKGDMGYTGPRGSKGASGQDAAPGLKGDIGIPGRPGKEGLPGLNGKD
GLDGLQGPQGPIGPKGDKGSSGINGKMDYLDQKESLEIGMKILKFYRLCLP
>Gypsy-1_FR_pol#LTR/Gypsy 733-3874 via tfasty with Gyp2_Cis_pol, 1 frameshift. [Takifugu rubripes]
MCVRDAGKRQGQRSVAAVGAGEQEELLFVKDSLSGRRFLVDSGSQKSLLPPGSADLSSSGAGPQLTAANGSSIETFGTRS
VTVCFSGRRFTWDFVLASITVPIIGADFLCSHGLLVDVANRRLIDAVSFATFPCLTGGPGPLAHASFAAAGNVFQRLLGD
FPSLTTPAFSTAVTKHGVEHFIPTAGPPVFARARRLDAVKLATAREEFATMERLGIVRRSNSPWASPLHMVPKADGTWRP
CGDFRRLNNITAHDRYPIPHIQDFSVRLAGTTIFSKVDSVRGYHQVPVRAEDVPKTAVITPFGLFEFLRMPFGLKGAAQT
FQRLMDSVLRDLTFVFVYLDDILVASPSADEHLTHLGQVFQRLADHGLIVNPAKCQFGLPVIDFLGHRISSDGAVPLPSK
VQVVAEFPRPVSVKALQEFLGMVNFYNRFLPRAAHLLQPLYEALRMKRATDQVDWTTERVRAFEGAKSALANATLLAHPA
PRADIALTTDASDVAVGAVVEQSVGGAWQPLAFFSRKLRDNERKYSVFDRELLALYLATRHFRFPLEGRSFTAYVDHKPL
TFAMSKVSEPWSARQQRHLAAVSEFTTDVRHVAGKANPVADCLSRVLICPVHLGLDFSAMAADQSGDPEIGALESTGTGL
KLEKAVVQDGGPTLLCDVSTGRPRPVVPVAWRRRVFDMVHSLSHPGVRASVKLVSAKFVWPGLRKEVREWAAACVACQRA
KVHQHTKAPLEPFAIPARRFDHVHVDPVGPLPPSQGTLTMVDRITMVDRTTRWPEAVPLSSTTSADVARAFLSAWVARFG
SPSDITSDRGPQFVSELWSSTARSLGTQVHRSLKAALRAALSDDSWVDRLPWVMLGLRSAPKEDLDASPAELVLGQPLRV
PGEFLPESAPPCNFPAGSYFSAGPALVPSPVLHCFPRSFVPTDLATARFVFVRHDAHRSPLRPPYDGPFRVLETGAKSFV
LDMGGRSERVTLDRLKPAHLLVGQDVLPAQVPRRGRPPKVQNVPSDDLCSNLQPAVDXFSPACDSSAFPEEGRRSRYGRL
IKPPVRD
>Gypsy16_VC_gag#LTR/Gypsy 16-2358 [Volvox carteri]
MSAEGRQSSDTLENNLPDQQTVTNQDANTSAGGSAAADLMPTDAAADQLEVSILRRLSAMSPHSALALFRRLGTSLASYI
SESTGDQPTGGARNRDQPTGGALNRNQPPSEQLTPDISLSFQQLTGVEETQPTGGLRPYSESSEPADQSMPEANAGVALT
VLDAAAPGTSNGQSEQRQGLRGIASRLRELVQSLPGRVTSFPTPLVRTQSLPSLLLLSQPDNVTPERQVARDVAQQPQPD
SLTHARTTAAIPNRLFMTPIPNDDAVLQARRGLGPTAVPQGTAAPNQDARPAGMQPATGLGLQPANAAHQAAPGFTFGQP
FMQQPQQQQRPPDFYQAFSFSGLPGVEGQRGVPPPVDLQREIAGNSTTLVQQLQDVRGRINSQGHLMEKVNNNINHIGAM
MHTQNQVMHGQGQTLSRVVDQVNQIHQVGTPGPTLLTQNSPVPFARHLPRPPCLTGDPKQDNKSISDKLVWYNSVVEFMQ
LTGMNHISNFKFFLQGPASKWFDSLQRYYSQKGISLDGSSLAAEFKKAYGDPSRTHELLEARERLQRGEATQTPGMSVSE
YVQKFLLILLDAPDMAESDKISWFFAHMQPGLAKASAVDKDNCRHKTLDSAIEAAYAAEHRMNIAKSVRATAAVAAVATI
HDDEPNLPGRWVDSDDPMDNSDSDPEPPHVAYAKPRTRDAKHGKGSSRPQQFTKKSTYNPLQSSRKKQILQSMAAEREAK
RNKTGHGEVKRTDNWLQKLCFDKGYCWSCVHENDGLPKDKEPTHWKDCTKHNSRRQDARR
>Gypsy15_AG_gag#LTR/Gypsy 869-2131 [Anopheles genus]
MQKLFEKIEILDRIYDQVKQLNRCYRLCALTTLRDNTKEIYDEIQELLRKHESSIKDEILTKLVKKSRYVYYEINKCIKI
HFERHPDSLNTTLSENQFDITIETKPDKMADIMELIKITTSLISKYDGNEKDLKGVVSNLNVLKKIVKPENKETVIELVL
GRLTGKARIVVGETPTSIEDIVSKLQDRCSIKVTPEIVVSKMDNTKQTGTIEDFGSVIEKLTQQLEEAYIAEEIAPEVAR
KKATKSGISALSYGLKDGETKIIMRSSKFETLHEAIEQAVKLELEDRTKKGKNDQTKILYSNATRNNRGYGNNYQGRNNF
NKFSNNNRYQTQIPPRFPPARYGQNNNRNNNNFRYNNNNTNNNRNQHANRQNYSNRNQYVQSNRNNSNWQNNRAPIHNTV
TAEEQNNFLGHSQVSENTLY
>Gypsy26_AG#LTR/Gypsy 36-3872 [Anopheles genus]
MANDEEPRPTTSAANAANATNNNNTAEAPRTITHANFAFDAFDKAKCKWSRWVERIETAFEIYAIKDVRVKRNLLLHHMG
GEAYDVLCDKIAPKRPRECEYKEVIATLEEYFHPEPLEISENFRFKCRRQGDKDAHSAEESVDEYLVALRKIATTCNFGQ
YLSTALRNQLVFGLKRNDIRNRLLEKRNLTLEEARDIAVGMELSKKSSAEIENGGPSQDVHAVQKRNEKHNHKEAKANKS
LPKNVTCYRCGDAKHVANKCKHINTICNFCRKKGHLAKVCMKKQSQNEVCTVISLNNIVPKWWIDLTVDNITMRFEVDTG
SPLTIIGKQCYEKYFKNKPLQKCNVELVSYTNNAIEVLGTIKVKVDNEMLPLYVVNLMKRPLLGREWLNAVPDWNNRLQV
NEVNEMAINTNSLNTILQKYADVFDPNLGKISGVQAHLTLKENAQPIFLKARRVPFNLIDAVDQELDKLVAEDVLEEVPT
SKWATPIVPVRKAEGKVRICGDYKQTVNQKLQVDQHPLPTVEELFASLAGGKRFSKIDLVQAYLQMEVAPEDREMLTLNT
HRGLFRPKRLMYGIASAPAIWQRQMEGILHGISGVSVFLDDIKITGPNDQIHLQRLEEVLKRLNDRNIRLNKEKCLFFAK
QIDYCGYTIDEHGIHKMRDKIEAIANMRRPSNKDEVRSFVGLVNYYGRFMRDLSTILYPLNNLLKNDTPFKWNKEQEKSF
QKVKEHIQSNECLVHYSPELPLLLATDASPYGVGAVLSHVYPDGTERPIQFASQTLNKVQQKYMHVDKEAYAIMFAVKKF
FQYLYGRQFTLVTDNQAIAKILGEHKGIPVMSALRMQHYATYLQAFDYKIRFRKAADNANADTLSRLPLSCQDTTTFFEE
TDGIEINQIETLPLTVKELSQATAEDLTVKTLIQGITHGKQVPNENRFGIEQQEFTVQQGCLLRGVRVYVPAKLRARVLE
ELHSTHFGVTRTKSLARGYCWWPGIDIAIETMIKNCAECQSTRPEPSKVPLHCWEKPTAPFERVHVDFAGPFMDTYFFIM
VDAYSKWPEIRICKSTTAEKTVQMCREIFSSHGLPSVLVSDHGRQFTSDVFQRFLKMNGIVHKMGAPYHPATNGQAERYV
QTFKQKLKALKCSKSELHLSLCNILITYRKMIHPSTGKTPSQLIYGRQIRSRIDLMLPSNEVHHGGNLHTKQFSDGDRVR
VRDYLSSDKWKFGRVMEKLGKLRYSVRLDDGRVWERHTNQMMGVGEDLPDSNNNLTDAQPTSSQDAVNLRRSSRLQGR
>Gypsy38_AG#LTR/Gypsy 387-4373 [Anopheles genus]
MENALIAAMVEDHTRLGLVKKCEERELSTVGTKEELAARVVAYDRTDAADFADAELPTVDRVQPYSFRDVEDGVDAFGAG
STQDVRAWIRSFEEISTMAGWNEDQKLIMCRKKLTGVARGFLNTLKGVTTYANLRRALINEFAPSVRASDIHRQLSTRRK
KKEETGLEFVYAMQQIAQQIDLDEASLVEYVADGITNDERQRSMFYEAKNINELKEKIRLFERAANKFQQERPKVVGQRI
PDKLKQRHCFNCGSASHRLIECPTKQEGPTCFKCGTKGHSAKDCTTAQGRRPHCYACGEVGHVATRCPNNSNNNRVQTMT
SSFPIVCVSVGNQLCEAVIDTCSDVTLMRWDLFQELKLNCNELKPSARVIKGYGGKQSNVCGELTIRATIDEVEEIIRFV
VVPSNSIDTKMLIGIDVLKRVNYVITNGHAKITKQQEEEEKPTGVDDRWVYRIVCESHQEIDAPSNYRRVICDMVNNYEP
AKISNVESEMKILVNNEEVVRTLPRRIAPLEKEVVRKQVREWLNDGIIQPSRSPYASAVVVVPKKDGSHRVCVDYREMNK
RIVRDSYPMPNIEDQIDQLADARVYSVLDLKNSYFHVKVEKESRQYTSFVTTDGQYEFLRAPFGLCLSGNAFGRFIDAVL
HELIIDGTVMAFVDDIIIPSRDEEHGLASLRRVLEVAQRAGLHFNWKKCSFLKRRVEYLGYTVYEGKIEPAPQKIEKVKY
YPQPKTVKQLQCFIGLASYFRKFIEGFARIARPLTTMLKKESVFEFNEEARAAFESIKEKLVEYPVLHIFKASLVTELHT
DASKDALAGILLQRSEEDGLLHPCYYYSRLTNKAEKNYHSFELESLAVVESIKKFRCYLLGKKFKVVTDCIAFKQSLNKK
VPNARVSRWFVTLSEFDFEVEHRSGEKMKHVDALSRANVLKISAGVCEKIIQGQLRDEDLTAIRTALDQGEERNGFCLIN
GVLYKNENAHNKICVPRAMETGMIREVHERGHFGIKKVKEQLTEDYFIPEVEKKIKYCIDNCVRCIVSDRKRGRAEGELH
PIPKGEVPLDTFHVDHIGPMPSTRKCYNYILTVVDAFTKHVWLFATKTTSAEEVIKKLTIISDTFGNPRRIICDRGSAFT
SSLFTKFCEEANIELHHIVTGVPRGNGQVERVHRIIIPTLAKLSYENPENWFKFVNNVQKAINNSWQRSIRMTPFELMIG
VKMKEKEDIRINDILQEEIQKMFTDDRNEIRKIACKGIARIQDENRRTYNLRRKSIQKYKIGDIVAIPVTQFGIGRKIKR
KFFGPYKIVKTFSNERCEVLKLDEQTEGPMRTTTAFDQIKIWADSGES
>Gypsy32_AG#LTR/Gypsy 129-4457 [Anopheles genus]
MPTKDEMLCALESKGIEVPVTASIPQIRNMFSENVLQLTSAEAVATTSRGEICPPSSTAIAATTTTAVATVAANCASTIL
KGDNDTDSATILSASVACAPIALNNENSSSLPANADNENELNEMRRRLELLELRQRVQTLEYQSGKFSASDLKLDGIIEP
FTGDDASKCIIEWLDELDHHFSLCRVQDSDKFFYVYRLLKGSAAMVAKASRASTLQQLKDELVANFYVTPTTEGVYRQLR
NRRLSPHETALRYVLDMQRIASRASVPEPELINIIFEGLGSPSHTAGMRFLVEKVEDLKPLLNKFEAIRPRYVAKSSETP
FPSDRKRVTTNRGTTPTTVRCFNCSQFGHHQSACTRQRRPPGACFRCFQLGHNYKSCPNAETSAAAYPDAANRVDIDNAE
TLPLNELHEVSASFLKSGKIIMTVKEYSLFDTGSPVSFINEKIVPLCLLSDPVPSNYKGLGNSHLYTRGQIHCRIQFRET
ILHHMFVILPHTSMAWPIIIGKDLLPALNVHLMYFKDHIPLKRTCIIPTKTIEEQKRNVSKSGILDNAFSEICAIDTFES
EFKLDTGPSLSLEETSTILSIFENSYINNTSKNNELSNHCMKINLTNQTPIFTKPRRLSYGERNQVKEIVSNLLKEKVIR
PSNSPYASALVLVRKKNGEVRMCVDYRPLNKITVRDNYPLPLIETCLEHLSNKKFFSLLDLKSGFHQIRMEESSIPYTSF
VTPDGQYEYTKMPFGLKNAPSEFQRFINSILREFIDDEKVVVYLDDIIIASLDFQSHLKTLQAVLERIKQCGLELRVDKC
KFAHQELDYLGYKANAFGIRPSDRHIQAIRNYPMPINVKQLRRCLGLFSYFRRFVPSFSCIAKPLTNLLQKDELFNFDTS
CCEAFETLREKLTQSPILAIFDPKKETELHCDASSFGFGAVLLQKQEDNKLHPVAYFSKTTSKEEAKLHSYELETLSVIY
ALKRFHVYVHGLPLKIFTDCNSLVETLKNRNASAKIARWSLFLENYDYTIHYRSGTSMAHVDALSRTEAVGAISDLDLDF
QLQIAQSQDPLINTLRQKLEAGSVQGFILQDGLVYRQSSTNHLQLYVPREMVDNIIRHNHEKIGHLAISKTCQTISQHYW
FPHMKPRVENFIKNCLKCIVYSAPPRTNNRNMYSIPKTPVPFDTLHIDHLGPLPNITSRKKYILVVIDAFTKFTKLYATA
TTNTNEVCEALTQYMSYYSRPKRIISDRATCFTSTAFKEFVDSNDITHVLNATGSPQANGQVERVNRVLRPILSKLCNSS
DHSDWSSHLRSAEHALNNTVHSSTNFLPSILLFGIEQRGQILDELHEFLNDKHVTTNRDLNLLRSEALSNIEYSQYRNEQ
YVANRTKPAPSFSEGDLVAIKYTDSTNANKKLVCKFRGPYIVHKVLPHDRYVIRDVDGFQITQMPYDGVLEVDKLRKWSN
NI
>Gypsy14_AG_pol#LTR/Gypsy 2288-5995 [Anopheles genus]
QDLHYTSHRTRTFFRRKPAAYRLPILAINLNANNLIKVRVEMSTEEYSHLIIDTGADVSLFKINKIKSNQHISAQNKINL
TGITTHTIDTLATTFTTIHFGETSVKHQFHLIPKELDIGADGILGRDFFANYRCVIDYEHWLLNFTHNGMAVCQPIEDKS
NDGFILPTRSEVIRKVKLPNIDEDSIVFAEEIRPGLFCGNSIISKENQYVKFINTTEKNIFINHKSFRPQVDQVKNYNVT
KPSGNKEITRFDSIINSINMKNVPQYIESDLKNLLAKYTDLFCVNEDKISINNFYKQSIQLKDNIPCFVPNYKQIHSQSD
EIKQQVDKMLKNDIIEHSVSSYNSPILLVPKKSETEKKWRLVVDYRQLNKKIMPDKFPLPRIDEILDQLGRAKYFTTLDL
MSGFHQIPLDKESRKYTAFSTATGHYQFKRLPFGLNVSPNSFQRMITIAMAGLTPESAFVYIDDIIITGCTTKHHLDNLK
KVFDRLRHYNLKLNPQKCKFFQTEVTYLGHKITDKGIYPDESKFEAIKNYPKPVNSDEVRRFVAFCNYYRKFIRNFAEIA
KPLNELLKKGKIFNWSSECQQAFDTLRNNLLSPMVLKYPDFTKEFIITTDASDTACGAILSQICEGNDHPVAFASKSFTK
GEKNKPTIEKELTAIHWAINYFKPYVYGRKFKIRTDHRPLVFLFNMKNPTSKLTRMRLDLEEFEFEVEFVAGKTNVGADA
LSRIVTTSDRLKSLQECTNEANNNQALVVKTRAMTRANREETNPVAQNDTSEKIGKPAFWNTENPSEVNKLLKIQSKINK
DSIKITLFNNNYNKELESTIIRLNQNGSQAFEAALLRLCTYAKKLNRDKLAISMEDEIFTQYSPQTIKEIVNRTIFGCEI
IGFVPPKWITARKEIEEILHNYHMLPSGGHVGQYRLYLKIRDKYKWKNMKEDIKGFVKNCEMCKINKITRHTIEKPVVTT
TPLRPFEIISIDTVGPLPKTAKHNRYAVTVQCDLTKYVILIPTGNKEANTIARALIENVILTYGKFAEMRSDQGLEYNNE
VLKKVAEALGIKQTFATAYHPQTIGALERNHRTLNEYLRAFTNEHGDDWDNWVKFYEFTYNTTAHTDTGYTPFELLFGRK
ANLPQDIVTGKIEPVYNHELYYNELKYKLQKSNEVARKKLIEQKEKRHIAPNCSINPLIIEPGDKVYLKNENRRKLDPLY
LGPYIVSKIQNPNCTIVSKYSKKESTVHKNRLVKR
>Gypsy11_AG_pol#LTR/Gypsy 2067-5735 [Anopheles genus]
FFRATSSIGKYPILTINPDADNFVKVKIEITKEIYSTLIIDTGATVSVLKASKLKPGCKINTSKKLTLISSSDHESETLG
TAMTTIHFGDYSIMHEFHIIEDVESIFSDGLLGKDFIKHRCIVDYVNWMIYFSSDNGLISHPIEDNVNGNYILPKRSEVV
RKISIPNLTEDSIILSQEIQPGVFCGNTIVSKRNQYIKFINTTDKDVSFNIKSYTPEVEPLREYEQLQKKLDTSKERIQK
IHNKIHIENIPQIAREELENLITKFSDIFCLEDEPVSTNNFYTQEISLKDNIPSYIPNYKQIHSQTEEMQSQVEKMLKNN
IIEHSVSSYNSPILLVPKKSGEGKKKWRLVVDFRQLNKKILPDKFPLPRIDTILDQLGRAKYFSTLDLMSGFHQIKLDKN
SRKYTAFSTPTGHYQFTRMPFGLNISPNSFQRMMAIAMAGLTPELAFVYIDDIIVTGCSARHHISNLGKVFDRLRKYNLK
LNAEKCCFFKTEVTYLGHKITDKGIYPDDAKFDTIKNFPIPTNADEARRFVAFCNYYRKFVQNFAKIAKPINNLIKKDVK
FAWTSECQAAFDTLKQSLLSPTILQYPDFKKQFIITTDASDMACGAVLSQITDGNDLPVAFASKSFTPGEKNKPIIEKEL
TAIHWAINYFKPYVYGQKFIVRTDHRPLAYLFGMKNPTSKLTRMRLDLEEFDFEIEYLAGKANVAADALSRIILNSDDLK
ASIPKSKTILMVNTRAMVKKNNEKTDINKDEPIATTGTDHPAMWKTDRPLEVRKVLKIGTQRIKNNVEFIIYNHSYSKAL
GKFLLRNDVNGSQALEFALLEMCKIAKQYGRNKLAWSEEDHLFEEYSQQTIKEIANRAITKFEIILFTPTRWITTEKDRL
RIISDYHMTPSGGHIGQYRLYQKIREKYKWKNMKDDIKKYVRNCKACIVNKTTRHTKEKTVVTTTPTKPFNIISIDTVGP
LTKTNKNNRYAITIQCDLTKYIVVIPIHNKEANTIAKALVENFILTFGTFIELKSDQGLEYNNEILHKISEILKIKQTFS
TAYHPQTIGSLERNHRCLNEYLRSYTNEHHDDWDDWTKFYEFVYNTTEHSDTNYTPYELVFGRKANLPQDIFKTKIEPVY
NIDQYYFEMKYKLQKSNEIARENLIKAKIKRQQTLNKDTVPLIINLGDQVYLENENRKKLDPVYIGPFTVVSDQGPNCVI
QNNTTKKISTVHKNRLIKYTGE
>Gypsy9_env#LTR/Gypsy 3257-4675 via tfasty with Gypsy4_env, 2 frameshifts and 1 stopcodon.  [Drosophila fruit fly genus]
ILILIIAMAIATTKITDYSHTDYIPIMDGNVTIWDEYLGHMTNVTSYEIYADETKRTIDLLQKDHMKRILTTDLGHIDTL
IATIRVKHRNKSSINPLGTALKVVAGTPDFDDWEQIRFRQEQLLESEKRQVEINYKLQNRLNLLTKTLNDINKADEIYTE
HLFETMLAKNRIQISKLVMFRKWFEKMVTSLTLAKIHLINPVILDDIDIKEINNEQLTNASVADILEVAKAKVFQNNNMI
YFLITFPNPELVCKKIKIFPVQHKNTILNLEDSNIFADCGSKTIAINQCEATVSTTFCKTTSTPTCAEQLTVAQCGTRSS
HLNPITEVDEGIIIINDAAMRVTDQEGLNRTITRSYLITYVDRVSLNGTLFINHTKSLKQKPAASVGTQINVTSHKNHHS
LPYLHELSLKNLICSLKAEVLSRPIVSSVITFTISLACFGIVYIAYHWFKRxRLIEPETALQRPEDGPHLTKG
>Gypsy11_Dpse_env?#LTR/Gypsy 6384-7118 No matches [Drosophila pseudoobscura]
MLTPRIHRDETNQEPGYLARNDAPNEACVAAPPGHIRFGNPDILRGTTHRTRRAWLLLLDTSASGTRISCEERRTERGVR
GCPSWTQPLQEPGYPARNDAPNEACVAASPGPIRFRNPDILRGTTHRTRRAWLPLLDTAASGTRISCEERRTERGVRGCF
SWTHPLQEPGYPARNDAPNEACVAASPGHIRFRDPDILRRTTHQTKRAWLFLQGQTATVIVPKGPTKADILEILIKSITA
PPHS
>Gypsy13_DR_gag#LTR/Gypsy 95-1765 [Danio rerio]
MDIIEAEGIKIPNSVIISGLTQDKSDDELFDFLKQYGSFAKTVFISDKDSEFYQSVILEYTSGQALHSLEPQLPYTHQLS
SDPSVTYHVRALSSVFTQYKGTSVTKSYLEGLKEVAKLSGTDFEIVLSQMLSQMTAELTPTSADTEADDEDLDEPQAQVC
PEESFTPAPVKISQPDDSLSQHTSAKPNKPPLLTSSEVLNPPEVQKLVIEHVVRTGEVATQGLMQQRLRVFSGKCPRPGS
EVDYDTWRSSVELMLKDSTLSDLNVSRKIVDSLLPPAADVIKHLSSEAPSSAYLQLLDSAFGVVEDGDELLAKFMNTLQD
AGEKPSTYLYRLQTALRVTIKRGGVSPEEADRHLLKQFCRGCWDNDLITDLQLERRRNNPPSFGQLLLMLRTEEDKHTAK
VTRMKQHLGSSKPRAVMHSQRTWVSSEVEQGEVSNMVSLAAETKEIKRQIAKLQSQLASLVPAHKTQKKASQQAVVNKQD
KKKSDTANQLTRTPVSQRQKDRPRPWYCFTCGEDCHIASSCTSEPNPTLVNAKRKLLREKQLLWDSQNANSNPDLN
>Gypsy13_AG_gag#LTR/Gypsy 1072-2289 [Anopheles genus]
IKQKKYNNNISITSHSMLLKINQNIIRLKNIEKKLSCDRKFRRCLLDHYSGSAKFCFDKIKYYLDSIQETEPVSELKRIL
KEASDIYANIQSRIQFHQTNKIQVKFKTLAKLAIVFNRWNQNKMETFDIKTATALVQIYDGNTDGLENFVDSSNLLKELC
PKNPQMLVKFLKTRLIGKARLGLPPNIDDFDSLINDIRSRCQEKLNPDKIISQLKSIRQTDTKALCDEVELLSTKLKNVY
LQLHIPEKVANDMSLKHGINALIEKVHNQETKIVLKAGQFASVSDASEKVLENERNSNGSQILAFNRNYYDNRKFVRNKY
PPNTYNRFQPNTNNRWFSNRSPLGNNQATSNRYQNQRYPNNSFRKQFPNTNTRRVYNTQAAEEEHFLGVPQALEEIIQPT
NDGQH
>Gypsy38_DR#LTR/Gypsy 594-5171 [Danio rerio]
MSSELDIFFESPNEESFDKLTKEQLIELANKYDVHLTTKDKKLKESIAVVVKAGLVRLGLFEAEKSVVGEEREIFTPSSK
YETSLSFEQQKELMLLELEKAKINGELEMRRLEVEALRFRLIGEGKLGESANSAIVSAKKGLDVTNNIKLLPKFSETDVD
TFFRLFERLSTSMAWSEQEQTMMLQCVLVGKAQKAYAALSAVDSGSYSKIKEAVLKAYELVPEAYRQRFRNIRKSNAQTY
SEFVSELKLQLDRWCSASEVKTYENLYELVLLEQFKATLPEHVVLFLTERKVKSAEDAAVISEYVLTHKVERMGSGVKNK
LRSDVFGESAALRPSAFEMSKTEKADKALKPYGDNNDRCAYCHMKGHWKKECLVLKGKLSRVKSEQKAVLTVSSVQTDEN
ANDDPVVLQKPVMMVRAANESYSPFITDGYVSLKENAEKTPVKILRDTGASESFILESALPFSQETSTGSNVLIQGIGLN
TMSVPLHRLFLQSELVSGPVVLGIRPSLPVEGVSVILGNNLAGDRVWPDVPPPPVVTTTPVLGETDISTDFPETFVSCAF
TRAMRKQGIDEQELLEREIPVTSNKSVPGFIAVPSITRHDWEVAQCEDVSLKPLFDVALSQDAAESSSSCYFVHNNVLLR
KWTPNKEEDLGGAVIQVVVPVSLRDAVLAAAHGGMSGHVGVNKTYQHLLQYFYWPRVKSDIRRYIKICPTCQKTGKPNQT
LKPAPLYPIPVLEPPFQHLIVDCVGPLPPSKSGSKYLLTVMCQSTRYPAAYPLSSITTRSVVKALSQFISIFGIPKIVQS
DQGTNFTSKMFSEVLQQLGIRHNKSSAYHPESQGALERFHQTLKSLLKAYCTELKGDWELGLPWLLLAAREFVQESLGFS
PNQLVFAHSVRGTLSVMTDSVVPNEPPQSLLKYVLGFRRRLLLAGELAKEKLEKAQKKMKGWFDRKSAVRKFSSGDQVLA
LLPLPESPFCAQFSGPYTVLRSVSDQNYVLSTPERRKSSQLCHVNLLKPYYSRDGIETSKSPVMLANTTLVSESENDVKI
PDDAILHPRLNNSESLKRLDELLKHLPEKHCAELTSLLLAFSNLFSDTPTRTDVIEHDIDIEGSKPVRQRFYRVSLDKQK
KLEAEVNYMLQNNIAKPSFSDWASPCLLVGKPDGSQRFCTDYRKVNAITKPDSFPLPRIEDCVDQVGSASYVSKFDLLKG
YWQVPLTPRAQEISSFITPFGLFSYSVMSFGLRNAPATFQRLMNRVTSGLEGCAVYLDDIVIYSDTWDQHLTRIRDLFTR
LTAANLTVNLAKCEFARATVTYLGKVVGRGEVRPVRAKVLAIDNFPPPETKRELMRFLGMVGFYRSFCSNFSSVVAPLTD
LLKSKVKFDWTKKCEDAFENVKRMLTSSPVLAAPRLADPFKLQVDASHIGAGAVLLQADENGIDRPISYFSRKFNSYQLN
YSIIEKEALALIWALQHFEVYLTSGITPIVIYTDHNPLTFLHSLQNPNQRLIRWSLFLQPFALDIRHIKGVDNVLADTLS
RAPYG
>Gypsy54_DR_pol#LTR/Gypsy 1857-6213 via tfasty with Gypsy-19_DR_pol, 1 frameshift. [Danio rerio]
LKAMIDSGSMACTLSETAERQLLQHKPNLQKLPTNDVVIIGCGGQRVIPKAMYELELTVYACTMVVPVLVVPGQTDDLIL
GSNAIKWLIQKMKETDGYWRLVSSPTNPDDAECHQFLSLLSNVERWKGGDMPDKVGTAKLREKITLQPNHEHLVWAQLPV
STTVSIGSTVIIEPTLSKCRPRNVIIGRVITPMWGSRWVPFKIINPTEKVIILKKNTKIVDVFTCIAVEELSVPESIKCN
VQSAESPIVHVHSSEERNAVLDKLGLKDLHLEACEVSDEWKDRLLNLIEKYESTFSRSKMDCGEATDFVHKIHLVDEKPF
RLPYRRVAPCYYDKLRTVLSEMELKGIIRKSQSEYASPLVLVWKKDGDLRICTDFRWLNAKTVKDAHPLPHQSDALAALG
GNVFFSTMDLTSGFYNVPLFEEHKKYTAFSSPFGLHEYNRLPQGLTNSPATFMRMMMSIFGGENFSSLLCYLDDLMVFAP
NEHIALDRLELVFSRLSRHNLKLAPKKCKFLRRSVKFLGHVVTEDGVQTDSEKVKVISDIQIVDLMEADGITPSQKKIRS
FLGMILYYQHFIQDCSAKAKPLFNLLSNQAQNKARRKSGRLRKSLNVVKLSHEDWTSECNTAFETLKQDLLHSVTLAHPD
FSHPFILSVDASFDGIGAVLSQVPPGEKIARPVAFASKTLSKSQINYPAHRLEFLALKWAICDKFSHWLKGRHFTAWSDN
NPLTYILTKPRLDACEQRWVAKLAAYEFNLKYVPGAKNVVADALSREPFVKSCVSHRLLKEPYISLLDEVNGVVIGTVQD
AFRVSNHCQNVLACNNDQNENEMQDVNNYCSGSFGADEVSAALSAYSGDVVGLLPAANPTLPQFSSEDPSVTIPLSRLSN
LQEQDSILGRVINYVLRSRRPSKRERTMEPKSVTFLLKHWKKLKIRNHVLYRVKRDRLMNRKVFQYVVPASLRLDVLRGV
HDASGHQGCARTLSLAAERFFWSGMSKDIKSYVKNCQRCIVGKTPEPDARAPLERIRTSEPMELVCIDFWSAEQTSGKAV
DVLVVTDHFSKMAHAFPCHNQSAKQVARRLWNDFFCVYGFPKRIHSDQGANFESKMIRSLLEMAGIQKSTPYHPMGNGLA
ERFNRTLGNMIRALPVESKAKWPQLLQTLTFSYNCTVHETTGFAPFYLMFGRIPRLPIDIMFQHVLCDDRVVSHHEFVTT
LRRDLSTAAVIARKHSLREQNRHTILYNRKVKGAPLVVGDRVLLANRALKGMKKVADKWDSVVYEVQSVRPEINVYRIKD
SQTGREKVVHRNQLLPVSFLSWDVDEKESVLSNPTCATRGSPLDPALMENADSVSKTSEWLLRMDDSQEDDERDTNCGAS
DVHIEMTTSECSEIDQHSLEPVQSTKNLPVTESHESSSCVKVPENRTVSVICNQPTSTHASHITTRLGRPVRPPDRLICE
IDQQRLVESDPN
>Gypsy54_AG_gag#LTR/Gypsy 305-1627 [Anopheles genus]
MNPRVLALRNRSVQVHSKSVNNINPSLPQLNSTANSESCLNTQYNYQKRLQILKGELLNQSLEIDRALNASFSKMAYEFP
TEKAMLCIPEYHGAAKELDGFLFQVEYFANQIPRGESEEDLIRTVMFKLKGNAAGFFSRILDDTWANVKLNLIKLFGEKM
SVEAIFQQVETLQQGVNEPFTQYKERVARLKQNIMNIDTKNSEDSYAQKNLKIHFLAGLRNPELQTLARTNKHLEFDDLL
EYLEDEVVQIEHIRKIEARLNRSQTPVPNNEYDETYNASQNNSFNNRSMGHNTTYGGNQPHTLMNNSSASRCDHNNTNNL
DTCDFGQPQHNSTTHNQNNTNFNYDGQPQHNSTTHNQNNTYFNSSLAQPNRYFASYKNNYTQHPRKHYYQNRNQYTQPPQ
HHYENTCPPSSQNYYAHKFSQGPSQYTYQKQAYQNMHTKN
>Gypsy63_AG#LTR/Gypsy 35-4333 [Anopheles genus]
MSLENQNIQLEILKALQKLSETSTGTNNTERFVAMNMTEFTFDPENGGTFQKWFRRYEDLFESDAKELEDVAKVRLLLRK
LDAQAHNQYTNYILPKLPKELTFKETVQTLSKIFGSQSSLFSRRYRCLQLVKTEADDIISYAAKVNRACEDSEFHNMKAD
HFKCLVFICGLKGQTYADIRARLLSRIDAETADAPITLQNLVDDFQKLVNLKADTSIVEQQPNSSTTVNALHEKTEHHHH
EQYRQRYQESKTSEQPRRPCWRCGQMHFVRDCQYSTHQCRKCNRVGHKEGYCGCFSKFKPAGEEKTNTKPSTSDQGKLNA
RGVYIVNHITQHSSKRKFVPATINGVTINLQLDTASDITVISQQTWQKLGSPNIQPVTIQAINASGKPLHLSGEFQCTIN
INGQTQQGRCFVTTAVNLNLLGIEWIELFELWSIPIDTICNQLTTESIDQQMREIQAKHADVFKDTLGHCKKTKVKLYLK
SNAKPVFCQKRPVPFNTIPLVDAELTRLQNLGIIETVDFSEWAAPIVAVRKPNGRVRICADYSTGLNAALEANHYPLPTP
EEIFSQLNGSTIFSIIDLSDAYLQLEVDDDSKHLLTINTHRGLFRFNRLAPGVKSAPGAFQRLVDGMIADIPGVRSFIDD
VIVFGKDMKSHKDSLNTLFARLKEYGFHVKAEKCHFCKTQLVYLGHVVDKHGIRPDSEKIKTIASIPPPSNVSELRSYLG
AVNFYGRFVRNLHELRYPMDQLLKKESKWKWTPECQEAFVKFKEALQSHLLLTHYDPKLPIIVAADASNTGIGAVIFHQF
TDGKMKAIQHASRTLTPAEQNYGQPEKEALALVYAVCKFHKYLLGRHFTLLTDHKPLLSIFGSKKGIPLHTANRLQRWAL
TMLNYDFEIQYVSTQDFGCADLLSRLIDRNKQPEEEYVIATLTLEDDLSSILSDTSQKVPISFQALRKATASSSTLQAVC
KFIREGWPNCSTNLPTAIQPYYARRESLSIVQGCVMFGDRVVVPNIFQKKILQQFHRGHPGIVRMKSIARSYVYWPGIDK
EIEDFVKCCSPCAITAKTPTKTTLEFWPIPSKPWSRVHIDYAGPVDGFYFLVIVDPHSKWPEVYATRSITARTTIRILKQ
IFATFGVPEVLVSDNGTQFTSYEFKEFCVSQGINHLRIAPYHPQSNGLAERFVDTLKRSIQKIRKGGESLEDALTTFLQV
YRTTPSGDLDGKAPADIMFSRPLRTISSLLKPSEHGNVEPRNRMKEAEFFNKKHGAVKRCYQQGDAVYVKIYRRNSWQWE
AATVIDKIGNVNYNVFLKEKQQLVRSHTNQLKSRLANGQNMAEFSTPLSVLLDDFGLKTPLPSDQQSTSSQFVSCDEPVT
TSSDTELASQTLCSTPDHSELGNISSENDNAEESEGEEPVVQQQEQQSSILERSRRVIKLPERFKSYWMPNP
>Gypsy69_AG_pol#LTR/Gypsy 1409-4624 [Anopheles genus]
RFSIEINELHDLDIQRGCILGRIANNISVLFLIDSGADVNTVDEDTFDKLRNNEQSREQLYCVSNDTDKPLRAYASPGEI
KVVGTFVAELYISEERPCLFEKFYVIKGAKPLLGRETSLRYSVLQIGLDVTINCASSGKYYPDKFPGEMLAVTVEDEFPK
FNIPPVVLSYDITKPPSRRIFTNIPLPFREETQRRLQNLLATGIIEVVTDSMDRSFCSSLLVVPKGKDDIRLVVDLRGPN
KCIIRTPFRMPTLEEILSDLHGAKWFSTIDLTSAFFHIEIAEQSRHLTNFFGGNATYRFKRLPFGLCNAPDIFQETLQTK
ILSGCHGQKCYLDDILVHGHTKEEHDSNLKAVLHQLKAHNVRINTNKCVLGKNKVKFVGYLISDEGLCVENEKLKAVQNF
RRPETINEVKSFLGFMNFSERFIYMRADKTKYLREVAKSEVFYWSAAEESEFNFLKNEALKSIATLGYFSSKDDTELYVD
ASPVGLGAVLVQFDVECKPRIIACASKALTSTEQRYPQTQREALAIVWGVERFTFYLTGKSFAIRTDSEANEFIFGESYR
QSKRAVTRAEAWALRLQTYDFTVKRIPGHLNVADALSRLIAQTQEAEPFDQDDDKHLLYTLGGGIVSITWKDIEQESEND
PELVAVRTASKSGRWPDNLRRYEAERRSIRSLGSIVFKDDKIITPTKLRSQIMLTAHQGHIGVSAMKRIMREYFWWPNMS
KDVEVFVKNCNTCLVIARKNPPVPLTNRTLPDGPWQVLQIDFLSIPGCGAGEFLVVVDTYSRYLAVIEMHSTDAKTTILA
LSRIFFTWGLPLTIQSDNGPPFQSNEFITYWEEKGVKINKSIPLNPQSNGAVERQNQGIIKALAGAKQDGNNWKDALSAY
VHVHNNMKPHSRLGVTPFELLVGWRYRGFFPSLWESKVTKEIDRSNVREQDNLSKLVSKTYADTRRGAKDSDITVGDKVL
LSFPKKNKTDSTFSSDSYTVLVREGSKVVVQNDRGVQYTRNVGDCKKASQRTQLIEEIGPNSTSLSTQKDSEKESEHPSE
DRSRRSPIKRSQRAVRKPEKLKDMFLYRIYS
>Gypsy63_DR_gag#LTR/Gypsy 185-1586 via tfasty with Gypsy12_DR_gag, 1 frameshift. [Danio rerio]
MEVSEIIAWCRDKDVGLDKVIILSNVPTDCEDRVIYNVLDTALGVGKCKVLGCRLDKNKEFQFVLIEFDDDISKTSIPAE
IGGPEVGLWYTQVVCVAAEAPKKSKEDEFQTKLNLFLQNEGKSLADISSLASPAPDLNTKLVEAINSLVQTCHVASSEER
GIYRKLRPFSGFIPTPLGEDEFEIWVEQTTHILEEWQCSDNVKKQKLVECLRGPAADIVRFEKTGNSAATYSDYLSVLES
AFGSTEDAADLMLKFRSTYQNEGEKLSAYILRLDRLLHSMLRKKGIEYSALNHLRMQQIVRGALAGDMVAMRLRMTHKLC
EPPSFNELMKEVREEENMVSSRRTLPSNVAMSVVPTTKKDSSANTGTVDSDVEKLKKEIRGLKNEVSRLSAAAKEPVAHD
RPAMHSLAAVADCKTPTRTVTKANIFCYRCGEDGHLKRDCKNDENLRKVNQRLIRMRQSSGNFSGAQ
>Gypsy52_DR#LTR/Gypsy 73-5286 [Danio rerio]
MAELEELKKQFEEMQRRFGEQSGMLEQARAEQREALSLAKIVIEQQAAAQKAPSTVYIPRDRKLPEFSGCRSKPGELSIE
EWISSMKSAFKVMKIPEEDRIEFVKQCLKDEAKMTVKFMLNGKEKSVDEIFDALDQTYGDKLPIGSRLKDFYDRKQMPGE
TIRSYAYDLQEKLSIIQSRDPARIPDADGVLKEQLVLGLKDDSLRREMKRRVKAEKDLTFIQLMQEAITWSEEEEVQIPS
NLRPSTRSRGVVRATSATESSSVPLTLESLHEAVQQIAARQEELFQIVNSKEKVKPLVKENKMKSVPLKDSEGRYICYTC
GKPGHTSRRCLQNKENSKTQTVEREKTADRDTLVLESPGPSVIRSHTADCDTKNVSKSLCESAFGDCLTIEVKIAGISTI
CLLDTGSEVTTITESHFKDHFGEAVLSSANWVRLTAANDLDIPIIGCLEADVECMGKKLHGKCVFVIKETETHGTELNRL
PGIVGMNVLSELKDLFMTTGDVKKMNRYSCGFKEARVQRVLANIKMQTETLSCNDKIGFVKVAGKQAVTIPPFSERVLEG
RCRIPPKVSCQVLVEASSNVSLPKSVLIANVLAKSADGKVPVRVLNSSEKPVKLPPRCRIAALSKPQEVVQKELVEFEEK
EGTLYVKAVQKHQVDVDISTTEQLPVPVQMNLENLTESQRCTLQELLVKHSDVFSKNDCDFGYTTAVTHNVPTGDAPPIK
QRHRRIPPQVFQEVKKHVQDLVSQGILRESCSPWASPAVIVIKKDGSVRFCCDYRRLNKVTCKDAYPLPRVEESLDALGN
AQLFSTLDLTSGYFQVAMNEEDRAKTAVTTPFGLFEWTRMPFGLCNAPATFQRLMGVVLGDLTFDILLIYLDDIIVFSRD
FESHCQRLEIVFNRLREHGLKLKPSKCFLLKPEVKFLGHLISSQGIKVDGEKTQVLETWPAPTNVKELRQVLGFMSYYRR
FVPCFAQLARPLHALVGKGGKGKVIEPLNWTTECQLAFDKLKHCLMSPPVLAYPDFSQSFVLTTDGSLHGLGAVLSQRQG
DAERVIAYASRSLRGSEKNDRNYSAFKLELLALKWAVTEKFKEYLIYSKFSVVTDHNPLRYLETANLGAVEQRWVAQLSE
FDFEVFYKPGRQNTNADVLSRIPSGEEPEQEDSDKDFIKMNSDEVRTCLWPATKNQQRVQASVQVSVARKVPGYSWSDLE
EQQKTDPKIAPIYRAVLKNKNLSPVEQRNMNAELKKLAKQFIRLELKKGVMFRTILDPRDGEEICQLVVPEPLRYKVYES
QHDHCGHFGERSTLERMRRNYYWPTMSKDVQNWIKECKRCALAKDVFPKIRAPMTCTNVSAPLEVLAMDYTVLEESVGGY
ENVLVLTDMFSRFTVAVPTRNQTAHTTAKALVQHWFVHYGCPARLHSDQGRCFEANVIKELCRVYGIGKSRTTPYHPQGN
SQCERFNRTMHDMLRTLPPEKKKNWKEYLPELVMAYNSRTHTSTGYSPFYLLFGRDARMPMDILNGRDIEESGVDNLDDW
VKKHHDRLKTAVEVANSAAQEASRQRKRAYDRKSRGALMKAGDRVLLRNHSHRGRNKIQDHWEPLPYIVVKQNHTDTPVY
TIRPEKGGPCKVVHRDQLRHCTFQSSLPPRTSRHNSRAHTSQEHTDSEDPDVLVVPVTFTPTTLPDTQGRRESGDESDTG
IREHDNRISDEDSVDQSVNSGGSEAESENESIPEPRRSQRLNKGTLPVRYRTDFVLK
>Gypsy44_AG_pol#LTR/Gypsy 1638-4793 [Anopheles genus]
YTRATEPFFRNEQCMVEPVLPYIVIKNRKGEFPFLIDTGANVSFINPEIAESCETAKPFEIPLKNIASASGKFQLKSAID
LNFFYPKINCICRFMLHSFHHFFVGIIGTDILYNLNASIDLEKRVLKLHNFSQTLQIPLNFYTSSSQSSNSSFRLNHLNN
FEQTKLKKVLDSNMSVFYEPKLKLTCTTRVECCINTTDDIPIHQKVYPYPAAYTEEVNKQITELLDNGIIRPSHSAWTAP
VWVVPKKSDASGEKKFRMVIDYRKLNQKTIADRYPMPEINYVIDQLKGHTLFTTLDLASGFYQIKMRPSDIEKTAFAINN
GKYEFVRMPFGLKNGPSIFQRVIDDVLREEIGKTCYVYMDDVIIFGKNLTDHLINLDKILKLLNEANLKVQLDKSEFLHS
EIEFLGYVIGCNGIKPNIKKIEVISNYPIPKTLKELRGFLGMMGYYRRFVKDFAKIAKPLTNLLRGEESPSSNKKIELEK
NEIECFHKMKKILSSEDILIYPDYKKPFVLATDASDFAIGAVLSQDEDGKDLPIHFASRTLSKAEEKYSVPEKEMLAIFW
ALKTFRNYLYGATFKIITDHQPLTFALSSKNSNAKLKRWKSYLEEHDYELIYRPGKNNVVADALSRIAFSMTGTQHSADT
SDDFFIIATEAPINVFKQQIILKMGPDNIETKILFNSYKRITISISNINEASILKILQENFDHSKINGLFTTEAIMGQIQ
EVYRTHFGNQRLLKIRFSQKILEDIEDEEEQYNLIKKEHFRAHRCAEENKSQILRRFYFPQIRKKIIEFIKECEICHINK
YDRKPVSYPLQKTPIPHKPFEITHIDIFFIENHHFITYIDKFSKFAQIKLTPTRAAIDVVPIIKELITKYHPPKILVLDG
EKTFSSRELKTFFQSLEISTYVTPVGHSEINGIIERFHSTILEIYRISKMENPTLSPPDIIQISVQKYNNTIHSSTKYTP
QEIILPSIDSSKIIETVYQNLIQKQSQDLKYHNKSRKVIQIAENKPIYEKTKARLKHKPRFKKKTVVKVNNSTVNLEENR
KIHKNDLKIVR
>Gypsy41_AG_pol#LTR/Gypsy 1538-5080 [Anopheles genus]
RSKFSPSRKSEKQYLNSKKKYNYLPYLRTKQGLNLLIDSGANKNLIQPGVLKTKKEIKQIEITNIVGKQIIDTCGKTNLL
YKEIPSQKYYELKFHNFFDGLIGSQFLAENEAILNYRKQTLEISKVIMPFEKYFPNEKNYNHVVTLPTNTDGEWIVYEPT
KLCKKITVQPGVYSAKNKKTTILLQTNRPKPPNIQHKALEITVNNFETVTPLPMKPESKITSEMLSEIIRTSHLSTLEKD
HLFRTIIKNQNVLLKAGEKLSATPDVKHKITTTNDAPVFTKSYRYPHAFKNDVEEQINELLRNGIITHSTSPYSSPIWVV
PKKVDASGKRKIRVVIDYRKLNEKTIDEKFPIPQIEEILDSLGKSVYFTTLDLKSGFHQIEMDSNDKGKTAFSTAQGHFE
FNRMPFGLKNAPAAFQRAMNSVLTGLIGNICFVYLDDIIIIGKNLENHIENLNTVLERLSKFNLKIQLDKCEFLRKETEF
LGHVITQEGIKPNPDKITKILEWKLPSTQKEIKQFLGLSGYYRRFIKDYSKLTKPLSKCLKKDTKINTQDEEYKTSFNSL
KQIIASDQILAYPDFERPFILTTDASNYALGAVLSQIQEGKERPIAFGSRTLNEAESRYSTTEKEALAIIWSVQKYKSYL
YGHKFTLVTDHKPLTFIKTSTKNSKILRWRLELENFDFDIQYKEGKANVVADALSRKTEILTNTNINQDSSISGTPKNNV
SNTIDVNFEESSSISESLQHNNPSPNNTNSDSQTMHSADTSDDYFIHFSERPINYYRNQIIFRKSHITTDITETPFNNYK
RAIICRNDFDELTILDSLKNFHNNKQTAIMAPDESTISLIQSVYRQYFNQHGHFVLTHLQVEDVSNEQRQDIIIAKEHER
AHRGIHEVHNQLTRCYFFPHMMTKIKKLINLCKICNVHKYERKPYNIKITPRPIETTPFSRVHIDIFGIDKHNYLTFVCA
FSKFLQTIEIPSRNLTDIRKALAHFITTFGAPRKIICDHETTFRSLQLQSFLANLGTELEFSSSSETNGQVERTHSTIIE
LFNTNKHKFRDLSSPEIIKVVTALYNETVHSSTGFTPNEIIFNRTSNRNPEQIIQTTRNIYEKVSQKLHNASRNMQKYND
EKETPPEIETGKQIFVKKGVRKKLDPRFNEKTCLNANDKTVTMARNIKRNKNKLRRIKSQ
>Gypsy47_AG_env#LTR/Gypsy 5061-6572 [Anopheles genus]
QKNLLTFNIFSLFRLAICVSFTIVYANIGIHDITNNPLAVIPLGQARVKTGNIRIIHPIKIDHLEQVLINNDAELKHHVN
DNPLYNIIKLKVNKLHETFNKIRPHTNRERRWDTIGTIWKWIAGTPDAEDLRVINSTINSLIEQNNQQVLINDEIDKRLY
DITRIANSVLQLEEERFHQRSNEIIQLIIISNLDTLQNYLETLEDAILLAKHGIPSSKLLSLDDLNQMVMFLAEHNIHVS
STEEMLIRSTAQVTMNKTHIIYMLKYPFESKHTFEYNYIDSIIKNDKRILLHHNYILKNNTHVFESSQPCEQIDNGNYLC
DSILLEPSSKCIQKLVHGYHSDCTYEKVYSDGIIKRIHDAVILINNATVRISSSCNNDTQFLTGSYIIHFEKCNIYINGE
EFPNLEITIPNKAFQPTLGLIATETDVIDIPPSKYLNNLTIEHREILKKIKLENKSLSWKVNLFGSISGSIVFIVFIVIA
VLINIYRYQSLRFILPSASRETT
>Gypsy49_AG_pol#LTR/Gypsy 2277-5381 [Anopheles genus]
FFHNTSQTLRGRKKLRSSRELADLPRAYSTSPRLFVNDMMTSFTFLVDTGADVSVIPFHLAGKAYKPTDLVLQAANGSTI
VTYGTKLIQVSLGFKRVFTHIFIIASVNRPIIGADFLYKTGILVDIKGRKLIDSTTNLAIIGSLALVDTPSPKHFVLEAG
DFGRVLHQFPSLVEPPDYRKPVCHNVFHYIETKGPLPFAKPRRLDPQKRKIAHVEFQQMVNLGICRPSSSPGSSPLHMVP
KGDNDWRPCGDYRRLNAITTPDRYPIPHIQDFTMQLQGCNFFSKLDIVRAYHMIPVAEEDIHKTAITTPFGMFEFLRMPF
GLKNAGQTFQRFMNSLFNDLSFVFVYIDDILIASSTKETHLEHLRIVFNRLAEYDLKIKPSKCVLGVSTINFLSHTISAN
GIIPCADKVEAIKTFPTPKSVKQLQRFVGMVNYYHRFLPSVSNTLRPLYKLIAQHTKQKLKTFDWSEECDKAALQVKSDL
AKATILSHPRSDAVYSLTTDASNFAVGAVLEQHFEGSCQPLAFFSRVITPTEQRYSTFDRELLAIVLSIKHFRHFLEGRS
FIIYTDHKPLTTALTSKTEKSPRQNRHLDFISQFSSDIRYIKGDSNIVADTLSRVAETDSISNLDYKIFSECQRTDEQLK
TLLENKKNKNSAYKLDKLLLNNTELYFEVSTGKNRLYVPKSLRKETYDGVHNASHPGIKASRKMMTDRYFWPAINKDVAN
WTRACSACQRAKVVRHTKSPLESFSLPKGRFDHIHMDIVGPLPPSEDKIYLLTVVDRFTRWPECYPLTNISAATVAKTFV
EQYVSRFGCPLRITTDRGRQFTSRLFEELTKLLGTHHIATTAYHPQANGMVERFHRRLKEALKASGNSPRWTVRLPLILL
GIRLSYKDEIRGCPAEMVYGQSLRLPAEVFVPSSDKIDDDTSDLIVDLKKAFKSVEPSSPKDNNNTNNYIPKALENCRQV
FVRVDKVKTGLQAPYDGPYTVVRRFRKFFVIQMKDRNESISIDRLKPAFECEAHTKATKPLERSPVTKKHVHFR
>Gypsy47_DR#LTR/Gypsy 215-4954 [Danio rerio]
MALFDLQTFINNPTVEQFDRCRKDDLIQIADHFKISVVKQALKKNIKSALYERLVELKVLIMPVVEEEETEFLGAGAQSS
SADEPDEGRNESGAAAALTEGKPTLSPFDPFSPVYSGSKEDGRLKVRLARLQFEAQERAQARQAEMELRLEIRRLEVTAE
KEVKLRQLELEALKTPPKVAAQSTRAETSVAPVGDPTSTTFDISKYVSLVPIFRESEVDTYFSAFERIAASFRWPKDSWS
LLLQCKLVGKAQEVFATLSLEDSLNYDTAKSAILRAYELVPEAYRQKFRNHKKLSSQTFVEYAREKGVLFDKWCNASKAT
DFNSLRELILLEEFKDRLPERVVVYLNEQKVMSLSQAAVLADEFVLTHKNVFYPVRSDKNPTVQSVNFPRIPTATSRPKE
AIECYYCHKKGHKLSECSTLKRKNPQQPSKSVGFAKSITTNSNDESTDPSYTPFLLRGLISLSGNPEDQCEIVLLRDTGA
SHSFMVENALSLPEHSSCGSNILVQGIEMGFVNVPLYRVHLQCDLFTGFVSVGIRPSLPVKGVSFILGNDLAGGKVMPIL
EVTDHPNLTYCPDELSVNHPDTFPACVMTRAMSRKDDSVDLSDSFIAPVFSENVVSPPDKTATQKQQEKSEYFNFDGDAL
SLPVTRQQIIAAQKDDDSLVKCFDSVVDSDQIDKKQIAYFVENGLLMRKWCSNIETDADWNNVYQIVVPSAYRQHVLCLA
HDHVMSGHLGITKTYNRILKHFFWPCLKKDVVQFCRTCHTCQCMGKPNQVIPPAPLFPIPVIGEPFEHVIIDCVGPLPKT
KTGNQFLLTIMCTATRFPEAIPLRRITAPLIIKSLIKFFSTFGLPKIIQTDQGSNFMSKMFAQVLKSLSITHRVSSAYHP
QSQGALERFHQTLKSMLKKYCADTCKDWDEGVPLVLLAVRETIQESLGFSPAQLVFGHDLRTPLKLLKENILEIKESPKM
NVLSYVSRFRERLHDACKLAKESLKAAQNVMKRQYDTRAVARSFQPGDQVLVLLPMPGSALSARFSGPYVVQKKLSETDY
VIETPDRKRKSRVCHVNMLKTYHVKEKTQITTPVLPAVAVVSDVTHSEADDDGLVLRNAPQQCARLTNSEMLKNLNSHLT
YLSDSQRQDIIHLIQKFPNLFSDTPTQTSVIKHDINIQNSSPIKQHPYRVNAHKRAIMRKEVEYLMENGLAVPSCSPWSS
PCVLVPKPDGTFRFCTDYRKVNAVTVPDCYPLPRMEDCIDNLGSASFVTKLDLLKGYWQIKLTPQASAISAFVTPDHFMQ
YSVMAFGLRNAPATFQRLINTVLFGVPNCNAYLDDLVVYSSEWSEHISLLHTVFEKLSNATLTLNLAKCEFARATVTYLG
KEVGQGQVRPVAAKVSAIAEFPVPKTRRELRRFLGMSGYYRSFCRNFSSVVSPLTNLLSPSQQFVWSAECQHAFESIKAL
LCCAPVLAAPDFTTPFKLEVDASALGAGAVLIQEDRDGIEHPVCYFSRKFNKHQINYSTIEKEALALLLALQYFEVYLGS
SSFPIMVYTDHNPLVFLSRMYNQNQRLMRWALIVQNYNLEIRHKKGTDNIVADALSRCV
>ERV3-1_XT_env#LTR/ERVL 5005-6327  [Xenopus (silurana) tropicalis]
MRSLPCLLMLAICLMKVTAERNFYHETLKATAAVFNVTNCWICGKIPHATEEGIPLYGLPFNMSWINRTDPEWNFVFNMT
TKQCAIARYAGTEKEQQLKLTRKSTGILCVQKNQTTETVWLGKSQCDYVVNTVNNTHVMVTGKGEMFYMFYVKQCSFDFR
VTTNDTHICERSSTSSLVCCKILPSNSTRVGIYWQYQLYLATCSPLPNQLYFICGNNVYKWLPYNWAGNCYIGNIAPKFR
VLFENPKGHVRNWKRHFASSHVNELPEEWDTSEENRFVMILIPHYGVAKAVQMMRRMSRIIEHALNNTLDGLTSLTEEVR
QMRLVVLQNRASLDYILASKGGVCALIGDECCTYISDKSLEVEDDISEARKSVAKLHAQNTGSWLFSWLGQWGQQLFMYI
TSFIIFILGIFLVIKIISVCISKYTTSTIESLPIRKTGIIY
>MdoLTR3_gag#LTR/ERV1 393-2084 [Monodelphis]
MGNMLQLILWSXVLGIIAIYWGYCIIYNTVAGMIDNVLGTLTNMTMGWTQLPMNYLDVNYLWQIIPQVYVVFXAVTNILK
NIKAGANLIFQKKTVHALVIDNRLETLLGQIPIITEICQDYMQRKQGMGKGTDEETGDVTGQTNKDDVVTNTNTGTPLGA
VGGNDLANNIQAPINASANNLANASKAQKIMPLRDVAKVTDNSGILHAKVHKSFTTHDLESLRKRMPKFLLEPHLAIKEL
KRAFRLYEPDFEDVEILLSELFTPQEHKNFIEQTRKDSSLTSWPEVFEDLDFSNPRSMAYLRKCREDLLQGMKQLSERPN
AWGKFDRLSQEKNEHPSTFIDRLIEKTEGLLGFNPDSKESEAHVRRQFLKGCDKHLRDFFRNYCPKFDTISLNELRDTAT
YLHDNKVDQEREKNDLKKKLQETSEILRQKELEEVKNLATIKTFNRQTTQYRQTPQSQQRVQRDTRTCFLCSRQGHIVRN
CPMKHRYEQGQNKRDGKGQNAYYQGKVYNNKNYGRQDSNSKQCCSHCRLREQETPDLKSMEAAIASGAKPHYSEVVARNN
HYTA
>MacERV6_env#LTR/ERV1 5566-7323 [Cercopithecidae]
LGKVPFMISAMLNLPSTPLLPLLWFTLIIPASLTNPKFVWRFSITETWSTDNQAHSQTQGTADCSPQGCQAALLLNFHLS
SVGNYDRPVICFLYDQTEYNCKNYWQETNLGCPYNYCNMHEIGLMCANGICTPNDRPFVRNRTSGGYILXIKDPWDPRWA
QGVKGGLYATSWSSYPTATLQIKRVYVQQVPLPKSKQVHPPKSVQALQNLTSVVKSHEQKIQKLLSPPSPPNNEDPFSWL
TLIRQGLNLTQAAGVRNLSHCFLCAALGKAPLVAVPLPTAFNITTDSTSSSQATSLPQVPLYRNPQSQTLPFCYSTPNSS
WCDRTQAPSRTQTAPVGGYFWCNQTLSKTLNHTSITQSLCVPVSLVPSLTLYSEGELSELASQLSPSNNIQKRAVFLPLI
IGVSLASSLVASGLGTGALTHSIQSTQTLSTQVQAAIEASAESLASLQRQITSVAQVAAQNRRALDLLTAERGGTCLFLG
EECCYYVNESGLVDTNVQTLNKIKKELQQFNAPLTPGPPVWLLPVVQQMLPFLIPILILCLMLCLAPILIKFLRARVQEI
TRVTFNQMLLHPYTQLPTSDPNYAP
>MPMV_env#LTR/ERV1 gi|42766919|ref|NP_954562.2| gp70 SU (closest to SRV-2) [Mason-Pfizer monkey virus]
MNFNYHFIWSLVILSQISQVQAGFGDPREALAEIQQKHGKPCDCAGGYVSSPPINSLTTVSCSTHTAYSVTNSLKWQCVS
TPTTPSNTHIGSCPGECNTISYDSVHASCYNHYQQCNIGNKTYLTATITGDRTPAIGDGNVPTVLGTSHNLITAGCPNGK
KGQVVCWNSRPSVHISDGGGPQDKARDIIVNKKFEELHRSLFPELSYHPLALPEARGKEKIDAHTLDLLATVHSLLNASQ
PSLAEDCWLCLQSGDPVPLALPYNDTLCSNFACLSNHSCPLTPPFLVQPFNFTDSNCLYAHYQNNSFDIDVGLASFTNCS
SYYNVSTASKPSNSLCAPNSSVFVCGNNKAYTYLPTNWTGSCVLATLLPDIDIIPGSEPVPIPAIDHFLGKAKRAIQLIP
LFVGLGITTAVSTGAAGLGVSITQYTKLSHQLISDVQAISSTIQDLQDQVDSLAEVVLQNRRGLDLLTAEQGGICLALQE
KCCFYANKSGIVRDKIKNLQDDLERRRRQLIDNPFWTSFHGFLPYVMPLLGPLLCLLLVLSFGPIIFNKLMTFIKHQIES
IQAKPIQVHYHRLEQEDSGGSYLTLT
>RNNICER3_env#LTR/ERV1 5592-7469  [Rattus]
GNGRSQHRAPDMEGSTHSKPPKAKIFTLLLLTVLWTRGGASLGASPHQVYNMSWIITNLETGWSQVLANGKHAEGTWWPP
LTFDLCQLAKDSWEHTERTPHNSYPPCRHSDWYTCPGGKRTRECGGPETFYCAKWGCETYTRGWWGTKKGDLVAFSPETP
GESRITIEFTDQGKNTDWKVGRRWGIRLYTPGQTNPGLLFSLQLVRERVTQEIGPNPVLMDQKPPSRPAPALPPVGPPLW
LNTTQNSGDILTTPSPTRDPSTPAPRLLGTGDRLINLVTGAYLALNYSEPDKTQECWLCLVSSPPYYEGVAVMGNYTNQT
TAPASCTTLPSHRLTLPEVSGQGLCIGTIPPTHQVLCAITERIPTGSYYLAAPTGTYWACNTGLTPCISAAILRRSSDYC
VLVEIWPKVTYHGPEYIYSHFEGLTRFRREPITMTLALLLGGITLGGMAAGIGTGTTALIETGHFRQLQAAMNADLKAIE
ESVSALEKSLTSLSEVVLQNRRGLDMLFLREGGLCAALKEECCFYADHTGLVRDNMAKLRERLAQRQKLFDSQQGWFEGW
FNRSPWFATLVSTLMGPLIILLLILLFGPCILNRLMQFIKNRLSVIQTLVLTQQYQRVRQQEEIP
>PTERV1a_env#LTR/ERV1 6006-7691 [Pan troglodytes]
LTANMQLGSLTLTLVALVAAGENIKPAPNPFVWRFWLYENQTHPGQPHKPGKLVASADCPSSGCNSPILLNFTDFPVAKP
VAPIICFEYDQTEYNCKHYWWHQSAGCPYNYCNIHKYQWWGGEEQIDPRWPFHRRRDRDLSYTWIVRDPWNSRWTTPQHG
AVYYSSASTWPSSHLYLWRGLVQVRPLVHGNIQRQENRLTQDLRPFSWLKLLQEGLELANLTGLHSLSGCFLCATLGRPP
LTAVPLPWGSSTSAQANNHQNLSYAPIPNVPLYLNPSQEKFPYCFSGTNSSLCNITATPPNITLRAPSGIFFWCNGTLSK
NLSSPSVTNLLCLPVTLVPRLTLLTAGEFLGYTGNWTSAVIHPDPRPRPARAIFLPLIAGISLTASFMAAGLAGGALGHT
LIESNKLYQQFAVAMEESAESLASLQRQLTSLAQVTLQNRRALDLLTAEKGGTCMFLKEDCCFYINESGLVEDRVQQLRK
LSTEVRTRQFASAADQWWNSSMFSLLAPFLGPLLSLLFLLTVGPCVVNRILRFVKERFNTVQLMVLRAQYQPVNAETESD
L
>MacERV5b_gag#LTR/ERV1 339-1934 (MacERV5a_gag 91% id, 96% similar) [Cercopithecidae]
MGAAQSKPDPKSPLGCLLANFQTLGLSQDLKRKRLIFFCTVAWPQYKLDNQSQWPAEGTLDFNILTDLTNFCKRLGKWSE
VPYVQAFWDLRSRPDLCARCSLAQVLLAKSXPSSKEKDDSPSFSEPPDTLSLPPLRSPAQPPPYPDPSSSPSSSAPPLPS
TPPVSPPNLTDPVSPTSSSSSPVSAHTRSRTDLLCPLREVAGAEGVVRVHVPFSLADLSKIEERVGSFSANPTLYIKEFR
YLCQAYDLTWHDLHVVMTSTLSPEERERILAAARQHADQVHLTDPAMPVGTEAVPSAEPGWDYQVGQAGRRRRDMMVQCL
LAGMQAASNKSVNFDKLKEVVQGSDENPAVFLNRLTEALIQYTRLDPASPAGGTVLATYFISQSAPDIRKKXKKVEDGPQ
TPIQDLVKLAFKVYNSREEAAEAQRQARLKQKVQLQTQALVAALRPAGSRSSQRGGTPRAPPGACFKCGNEGHWAKQCPN
PEEPTRPCPSCRQMGHWKSDCPNLRTVATPPRDDPPPGTGGAFQLLDTDED
>HERVH48_gag#LTR/ERV1 424-2255 via tfasty with HERVFH19_gag, 5 frameshifts and 3 stopcodons. [Primates]
MGNSRSSVPKDSPLGCLIKKPANIRPQARYVPxAPCLFFFYCNSVWPQYELNNGSKWPANGTFNFTILTYLSNYCRRLEK
WQEIPYVQAFFTLRSQPVLCNSCSPVQILPLHSSRPDHLSPPNRTSFSLVRSSRLLSTPPKILPLPLTPSSLTPQASSLS
SQPPSSQLPSSQLPSSQPPSSQLPSSQPPSSQSAVSTSFPTPSPPQDNSSIACTHSPPPPPSPEACKPIPPPYAPIYPPL
PISSTPPSPFKPSARTTPASSFSPTCTHSGTIFGPCPTLTSAPVLECPLWEVAGTEGIVRVHVPFSLTDLSQINKRLGSF
PEDPTSYIRVSVPHPVLxTWHDLCIILSSTLTPEDRDHIWTLAQAYANTIHHQAPAQPTGAEVVPNQDPHWDYQDEALGC
CHRDHMIVCLLAGLKKGVHKAVNYEKLSxITQGPDENPDLFLSRLTEAMRKYTNLDPASPEGHLQFISQSTPNVWRKLQK
LDDGPQTPQQDLLNXAFKVFNNXNEESKRQKQAEFQMLASTIRGPAGPRGRSSTQKPPSNPPPPGACFKCGNEGHWSRQC
PNPGKASSPCPSCGEPHWKSDCKRLPQGLPPSLPELAKTSYLYLIGLATEE
>HERVFH21_env#LTR/ERV1 5339-6526 via tfasty with HERV9_env, 3 frameshifts and 3 stopcodons.  [Primates]
TSHLLNKNSGYCNGRHLPYLSLFSWLPCSIHHPYPIPTTRDGLLLPTSNNTPTCILVDRKRFLLHWEKKKRTQKASQLKP
NTLxQPLLTAALAGTLRVWMIENNKIVHLFSIHNQFRLPSQGILFLCDTSTYIALPSNWRGTCSTLLFLSPKITVAPGDQ
PLLIPVNIPIxHDHTIQLIPLLVTLRITTGVGTGIVGLTTSVSYYQSLSKDFTNSLEEIAKSITTLQSQINSLAAVVLQN
RRGLDLFTAKKGELCLFLDEQYCFYLNQSGVIQDTVKRLKDRAQKIKENVLxWPAWPSWSFSTWFPWLLPLLGPAVTIFL
FLAFGPCLLHLLTQFLQGRVRAFTHGTVQDMMLLQEYRRLQEQQSLLSSLPPQPSPLPSKKQPEDNGAPLLLPIKRL
>KORV_env#LTR/ERV1 5375-7381  [Phascolarctos]
RLTVLLPGSMLLISNPRHLGHPMSPGNWKRLIILLSCVFGGAEMNQQHNNPHQPMTLTWQVLSQTGSVVWEKKAVEPPWT
WWPSLEPDVCALVAGLESWDIPELTASASQQARPPDSNYEHAYNQITWGTLGCSYPRARTRIARSQFYVCPRDGRSLSEA
RRCGGLESLYCKEWGCETAGTAYWQPRSSWDLITVGQGHPTGTCERTGWCNPLKIEFTEPGKRFRNWLQGRTWGLRFYVT
GHPGVQLTIRLVITSPPPVVVGPDPVLAEQGPPRKIPFLPRVPVPTLSPPASPIPTVQASPPAPSTPSPTTGDRLFGLVQ
GAFLALNATNPEATESCWLCLALGPPYYEGIATPGQVTYASTDSQCRWGGKGKLTLTEVSGLGLCIGKVPPTHQHLCNLT
IPLNASHTHKYLLPSNRSWWACNSGLTPCLSTSVFNQSNDFCIQIQLVPRIYYHPDGTLLQAYESPHSRNKREPVSLTLA
VLLGLGVAAGIGTGSTALIKGPIDLQQGLTSLQIAMDTDLRALQDSISKLEDSLTSLSEVVLQNRRGLDLLFLKEGGLCA
ALKEECCFYVDHSGAVRDSMRRLKERLDKRQLEHQKNLSWYEGWFNRSPWLTTLLSALAGPLLLLLLLLTLGPCVINKLV
QFINDRVSAVRILVLRHKYQTLDNEDNL
>MacERV5a_env#LTR/ERV1 5388-7208 (MacERV5b_env 92% similar) [Cercopithecidae]
KKHPPSMIPGGRLRLLPLLNYDLRVPVTTLCLTFLSYPVLLSLGKTPTQTPPVNPFRWRFYLSETWTQNNHISSHILATV
DCRPQGCRSQVTFNFSAFNSCPDWWNPVICFLYDQVEYNCLNYWVETNGGCPYHYCNMHFTYLDMSYTKWQQPASTVRLV
RSYGRGEVPTFFLTIPDPWDPRWASGIEARLYRHGYESYPVARLKIYRAYVRVTSSLVSLASDIKQQEKVISALANPDNT
ANSDNKPQGSGNPFSWLTLVREGAQVVHMVGVHNISRCFLCAALNKPPLVAVPLPSPFNSSNLTPSFPLPGQALGEVPLF
QDPLRQQLPFCYSTPNASWCNRTGSAPPNLTAPPGGYFWCNSTLSKTLKASDTTLCVPISLVPSLTLYSEAELSSLLPLA
RPRQARAVFLPLMIGVSLAASLVASGLGTGALTHSVRSSQDLSARLQVAIEASAESLASLQRQITSVAQVAAQNRRALDL
LTADKGGTCMFLNEECCYYINESGLVETNLLTLEKVREGLHKKTSGLESPLGWWQSSMAGWVLPFLSPLLIIGFLLLIAP
CILRFIQDRIKEVSRVTFNQMLLHPYTRVPTSEEPHDDPYQQEAAR
>MacERV1a_gag#LTR/ERV1 476-1990  [Cercopithecidae]
MGNNQSTPLSLLVTNFKDVKARGRNLSVELKKGKLVTFCRSEWPSFGVGWPSEGTFCLSIITKVKTKIFLPGQSGHPDQI
PYILVWQDLVENPPPWITPFIPEPCKVLVTRPTRQRTPSAPSAPVLPDSQDPLTLEPTLPPPYPHLIPQDPVPQGGASVE
GNREAEAAESESNPGGPAGRTRGRVQRDQASRLPDSTVALPLREIGSLDDTGLSRLMYWPFSTSDLYNWKSQNARFSDNP
KDLTSLLDSVMFTHQPTWDDCQQLLRILFTTEERERIQVEARKLVPGDDGQPTANPDLINAAFPLTRPRWDYNTAEGRGR
LLIYRQTLMAGLRAAARKPTNLAKVYSVLQGKTESPAVYLERLMEAFRQFTPMDPEAPENQAAVVMSFVNQAAPDXKRKL
QKLEGLEGKQXQDLLQMAQRVYNNRDTPEEKQFKATKEMTKVLVAAFPQAGNGQNRKQKKQGPRQGLEKDQCAYCKERGH
WIKDCPKKRRPANPTSVLVTQDSD
>SNRV_gag#LTR/ERV1 gi|9628895|ref|NP_043925.1| gag polyprotein [Snakehead retrovirus]
MASNKWFVYSDEPTKVILKRDKSKEKDETKKKKIKTEQNSDAAYETPGTAPVQKPLLETTPEAELEKVLKGLEEWGYKAL
EKKRDPELWNPNQEGLDEYLFRGWVQGGLADSKKALEKNMEKFVPLFVVTMSQAVPYWRQTMQARNQNGKKQKNRIAELE
KEVADLTSAGRGADQVIAGMDKELKKTAEKYQAKLEELEEQLAAMTVEKEELESQVEGLKESLVEAETKKVSLMEVLTMP
TRSKGPKKRGPDLKQIRSLHVMADSLGMDSDGIDWDWLARQAWDYEGDEDPHVKEAEEEAWRERQTSQPSQPSQLRPFVA
AGNGHREDQWRPLTVTELPAAVTAVGGAWDPTRETGSARWKKIVKAAEAIGWGTGDVCQVVTAMSPSWADVPPEIRNRVA
TEKEIKAWLMKQGPGGGQGLLEFTKLRQGPTENPSNYLEKALELYLDSQPGDRDGNKDDPAFLQQATQGLLPWLKKAVIL
GGKNTSWQEMTSFCQRLWLVRDQFADKTGVSKARPIVRNEGPRPQQGHSKIVFGGNCRNCGKAGHMARDCWAKGGGQEGK
GPRQNTTWKPKSGAIASAPPAESPYADCAKQLADIEKRLKDLTTAGGGPKGPNPFHKP
>SFV1-2_AMi_gag#LTR/ERV4 30-1775 via tfasty with SFV1-6_AMi_gag, 4 frameshifts. [Crocodylidae]
MMELELVKNCPWHSGDRLMSDSDDLWAHIAYHQAGGRSSNMVAGYFSLKGEEGVGGREWVAQMDPSSFGCVMCGKGVVYR
PRDEIGTLSLARVKAAGAENPHPAQEFARCIRYAREGGEGTPPDKFNCPTLAPQSRGHELLTQLRENLETKGRTATKWSG
PKWDKGKMINVLFRSVSLVLRETANLETLVTVSKTAAELAARQNPQPPPENGAEKKGRHPEDPEKKGGATEEQAGLHPAT
PPQEVTSLPTAPPPYHGEEATSGKLYPTLPQDTVTISAAAHPVAITKQVTNPQGATTTTTTYRTRNRTELQELCKESKVK
PTETLVIWLGRLVVEYGSELLDLEEASFLTRQASWSGGHATDLELVVNNHNWNIPLPSLVAGQIKNKSHVWHDSRPGKAT
AEQLLLAIIGVSYCSWNPKLHQLGLTQAQQRSNWPHRFLRNPGTVPATLDAIEACVEVYRGEDAITLRLLLTPLATQPAG
NILSQLPRLQALMKSATANSAVALSHLTAYPVEYQGPRYHQFDPRKESKPPPQRTPEERAMFGFLLNRTNLTKQQLRAIG
DTGQRQLAHEMGFQYIEKPKNE
>LT-46_AMi-I_gag#LTR/ERV4 33-1757[Crocodylidae]
MELELVRNCPWRSGKRHVTDAEELEAHIAYHQAGGTGERPISGYFSLKGEEKEAHLHPGAFGCVMGGERVLFRSREEGGT
VSSVRVKPVGAVDPTLDPEYTRCLRYVQETEDQFSPQAVLSRLRSRELPSDLRESLETEGRAAAEGAAPKCDRGKMLSAM
FHTMTTLMRENASLKAQLLAAVQAAKDAAVREDPETPFQDGAEQEGSHAEEPEKMGGASKEQARIRPAVPPTEVTSPLAA
PPSCHGEGASSGGEHPPLLPESVMALAAVRPVTTTCQATDPPSAACATTYRARTRTELQELYEESKIKPEETLAVWMGRL
VVEFGSDLLDLEEASFLIRRASWSGGHAIDINTVTFNAHWPILLPALAAGQVGQESHAWHDGRPEKASAEQLLLAIVGIS
YCSWNPRACVLGLTSSQQRGPWPHRHLRNPGTVPINLNSVKACVEVYGGKNTVVLRIFLNPMVGQPASNLLRQLSRLRIL
MKSKTPSDWEHRSTVYPIEAQGASHSESDHQPLPQRTPEERIMFGFLINHSGLTKRQLRILGDAGQWQLAYELGFQYPDK
PDDDSSTLSSTFSSC
>SFV1-2_AMi_pol#LTR/ERV4 1775-4825[Crocodylidae]
IAAAGRAGGDNLGPDPTDLRPYTKLIVYDPTDPTIQREVSFLLDTGAQVNVITPSTPHKKTTKVIMVQGLNATATTAKVK
FWVVNHRKPLEAVIGSINILGIPGIKTLQLKEQILQALPIFIAESNWHQPTLCNTSIWRYKPIPTRDPLKGALTDLLRRL
EQQGCIQPVTASTRLSPGWGIAKPGKPDEVRLVVDYREANKRCLPLMQPNPLTLPQCLYEMAQFQKESWLGTTLDLKDMF
FSIPINDTEGILNMCVNGTMYKWTVCPQGYRNAPALATGAMNDTLTEFHSSHILPSQNKLRIWSYVDDIAIMGRDQQEVT
QVTNDLISHLGRKGWTVNVKKSKLQPTADITFLGTKFVGEMRFGVTHGSPDTSPLEGPLPTDKKQLQQLLGYLNWYRHHI
TPTHLPVLARLQRQLRNKSQRSMPWTEKDARDLHQLLTAIKTTPLYAFDFTDSMTVTLGYTTSHVWATAHNSRGELTYTS
HRTLQAAQHRYGNIRKILMAGQLVELLSHGHGILRAPGATLLPLLSAERPDPQFQGEPSTWNTLVLNHHYHWHCWKCEDL
APNPDAREGIPPILYRTTAPAWMASDGTTRGDGGYGFYCKPCHDTKLYAGHSSAQKNELLGFKEVIQHCLQHHDGTLPTP
VIAIDSQYIYKIVTGTGEPTQNLDIWRDIFNMLSTFTVLPLIKHTKSHRPETDLVHEVIDKLLEDPLRTDVVLTVEEGDQ
ETEVDPFLAWLHDHWGHSGPRTCHTRWRLTTSSRTPYGSRTDWERVARACEPCTKEKCHPTKHQIGALDPLQFAPGKVWQ
VDLLGPLPGAKLPNKGLVIVDLGTRQLQVIPLRKSHAAAVIAALTTAFATWKTPDTIQSDGGPPFNSVALNKFARLHNIA
WHLHLPYHPQSNGVVERHIGLYKERLHLKGSGTYKNWTKVNHDVLISLNADKTLWDKSIPRQPEPWNPKFAPSELVWITI
PHPRQSHPRVYEGKIIRAEPYPNTYTVSFEEDGKQQQILAHHNWLSRHSQLHTDTVT
>SFV1-2_Crp_gag#LTR/ERV4 39-1841 via tfasty with SFV1-6_AMi_gag, 1 stopcodon. (SFV1-15_Gav_gag near-identical; may be same element)[Crocodylidae]
MEGTLVNLCPWREGSRSITDSDELWAHIVYHQSGGVSQKNKITGYLSLKLPEGKEWAVTLSPAAFGCIMQSPAVIYRPQE
ATATLSLSKVKAARTVNPTPAQEFARCIRHVKEGGEPTPPDKFNCPGLEEGSRGHELLTQCRESLESDGRTATKWSGPKW
DKGKIINVLFRTVSILLRENNDLTSQLKTIAQAAAEQATGPVPENGGGSVTEPALKDGGGSVIAPKLEHGGNGAEEKGKP
LPPTHEPPTAPTAPPPYVEEGGVTAETEKKSESLYPTLPPRDSEPSPPTTAYPVALVKQVADGQGVTRTTTTYRTRTRAE
MQELHKESKIKSNETLMIWLGHLVVEYGSEQLDLDESSYLTRQASWSGGHVTDLTAVMNNVHWNIPLPSLVAGQVDHKSH
LWHEGRPADPTAEQLLLSIIGTSYCTWNPRAHQLGLTAAQRNGPWPHRFLRNPGAVPTTIEAVEACVEVYGGDHAITLRL
LLAPLVGQPAGNILSQLPRLQALSRPTPTTQAHPAATTDTGNWSVMMAGTPAQGNDSERTGPQGALHERANRFERTPxER
AMFGFLLAKSGLSKSQLRALGDAGQEKLAEALGFRDKAKNE
>SFV1-2_Crp_env#LTR/ERV4 4906-6504 (SFV1-15_Gav_env near-identical; may be same element).[Crocodylidae]
MRLLFTLLSLATLPVMKCASPSPTADNPIRTDNTVLRLLSLWADALGDGGTGEGLTACLKIPLSVTDPVLIPYLKVFNVS
DWFSQVSKGSVTSINISAPLEGGGSIFKDFTWPRNFTLANLSNTTLPPREDCFEREAPHACSAIPWGINPQGVDWSRPDM
SLAWDPHSITPPWYLSLTPSGAKSKSEVTLSPLTKPTPLVHWNASLAINLTHQGPLGNNSWFGFYYPILQAALISAACHN
VTFPFRQSGPPERASELFKFSGTCSELATPAPFGLVWACTDGRLYTVLPATLSGLQCFLGSVSFCPPLQASTAHPTSPLL
HRRIRSINPVWSSLTYGEKVAQGLSWAFEGFFVWGLGIAKARVAIAQLAEQVELLANRTASGLDLLDQQLQATSQMTMQN
RLALDAMLIQHGGLCQYLNLSRDMCCIAIPNVSLPLQNQITKIRKIAKDVNAISGVGQGWLSSVFKWLGWDASSWLLNLL
TPLLSLLFLIVVVTSCACCVFQFLKQKLITLSAFVYTHLPAQDPESVESGSEM
>ZVERF_pol#LTR/ERV1 gi|21070179|gb|AAM34208.1|AF503912_1 polyprotein (split gag and pol) [Danio rerio]
RGPQRTSEGALAEPLLTILVDNQPVQALVDTGATFSTIQRQMMEKDSLSTQSEEVRGFSGETEKWPLTKPLRVQVAGQTL
LHSFLCSANVPSALLGRDLLVKLGVKILCHPEGLIIIFPNGLTTNCSTPVTTTVRGQWVLQADKTVKARCYWLKLTDKTK
LQEVITKWEPWLNTLHKFQTPTDPWHCTLLYDISEDEEYEQNFSEVLGRSTSIKCTKLFVAREGVAAEIILTEEQEGYFE
MTETSTPHVTIFMNEGHEAKALGPMVKRMQKVGDWGKTDNEWEYSQALDGYRLTIDIAEEVIYQMVEVRRIVTTQEGDGE
GAERLLQEMPESLWSKAAGDVGKWSIEPVLFQIDRTEIVNVRQYKLRPEAVEGIGETIKELEAAEVLRRTVSGWNTPILP
VLKKTTGKYRMVHDLRLINEKVLTATLPTPNPYTIMSKLTPKHSHFTCIDLANAFFCMPLAEQCQGIFAFSYQGAQYTYN
RLPQGFILSPGLFNQALRELLDSCTLHEGTIVIQYVDDLLLAAHSNEVCLQDTRKVLTLLSTAGLKVSKEKIQISRATVH
FLGRIIGQTGTALSDDTKQTVLSHPKPLVVKDMMSFLGLIGYSRQYVPNYSERTATLRALAKEVGMKNSRARLNWTQEAE
AVFCGLKADLATAAALQTPNYELPFFLDVSTTASTTNGVLYQKQHQQRRVLHYLSAPLDKIEQKQPTCARYAAGLAKLIE
KSEHIVMGHPLHVLTSHSVISFITSSAFTFSAQRQNKVIRILTAPHITYEHQGVNMAHAGEGEPHECIPRAEAEEQIRPG
LSSIPLTKPQLTLFCDGCCFKTDSGKLVASYAIVEQTDDGYTIREQQVLQDRPSAQRAELLALVRALHMAKDKTVNIHSD
SAYAVGAATSELTGWARVGFVTSSGKPIKHAQEASDLLESIMLPQEVAIIKCAAHTKGKDPVSLGNEAADAAAKTVAGYK
PLQMTVTAVDELHQIDEHLTTSFLSKEQSLAAAEEISVWLEKGGRKDSQTGLWVGPTGRPIMPANLAGKVLTEAHSLAHS
SEKDMTKRVSQWWHPFMPHMISGVIASCQTCAEFNVKPTSKPTAGHFPTDRGPGCTVVMDFTDMITRVNGKRYLLVLVDQ
FTGWPEAFPCAREDAVSVVKCLINQYIPRHGFPRIIRSDNGTHFKNEHLADVEKLLGIKLRYGAVYHPQSQGKVERLNLT
LKNKLAKICHKSKLNWVDALPIALMSVRCSINRTTGFTPFELATGRQFPGPVAPLHAGDTDSPQMYHDKVCAVINMFSPQ
KSWPTESEASRPAENTTLWVRLKQHKRKWSSPRWSEPLRVTARTSHCVQLAGKGTTWYHLSACMFCPSPDRSLADVRVDL
RRGQREGEGEGEGDTEEPEREGEGGERSGQTEVAPALRTQLSATLVFKILQRTGDLLQTPEHIPIAHCISADYALGAGVA
KQIRDKYGVEELNTSVAQPGDCIKTTHGPRQIYHLVTKWWCRDLPTYEHLEASLIKLCYQCKKDQNKILAIPKLGCGLDK
LDYTKVKEIIEKVFKEGHIQVILLTK
>TguERV2_env#LTR/ERV1 5010-6923 [Estrildidae]
RTTERKVDWTPSGTTDHLHSSQGSWSGLLDTLHSSEESPSRTADCVNCGTNKAADKMCLIISGMLPIIVPILLSWSLGCG
MQKDQLTTLHSRMKREVQAETQVIKVSNAIRAENVMIGLVKDFAKMQNTSRITACLPIPKAAGDPINWGIIMTKLPEIQK
NKTIICKQVPESRQVIKVTWKVIGQWLHPLSQRDCLQNNGTIGYPIEWAGGIPNQWQCYLPHYKKVTENVTETTLVWKCE
AKDHKGQIEPWDSAWSLSILQKFQYMAATPWCITWEGSENETDPAVVNTDTSSRTKADKVSWWACNKTYDCTSDDIEIKQ
IPPLAVALQIGCACRGIKHKQGKVDYKILVGCTKSTLRSPGQFVWATSDGTWTTHLPVDGKVKEITLGLPTLCPIWKKSP
FKGKDELLQIRTRREVPNNENQDETWQEPSSGVKFGWALESLLGPIANYQNKEMLYKLTGQVDRLARVTREGFKELNVQL
QATTKMTXQNRFALDLLLLKEHGVCGLLKGQIDHCCIHIPNVTADVEYDINQLKQIEHEVQEEQKDLTTSWLDKVFKGLG
WNVSSWIKSIIESVIILLIVFLVIWLVYSVLKGEIRKRTSWNRKIIKALTRDPHPSSSDPPVHDNVHVNPGFEEHHV
>SNRV_pol#LTR/ERV1 gi|9628896|ref|NP_043924.1| gag-pol polyprotein (pol fraction only) [Snakehead retrovirus]
GVAALAAPLCSLKGRPHVSVEIEGHKIECLVDTGAEVSLTSLQLQAQRFEQVVGLGGKPVRVGIADHVDTTVGQVKGKGC
WRISQELAENILGNDLLRSLGLIVDQCNGVLWQASEGLGPDNWMAAETLRIYSIKSPGHYNLPELLATKDEQLADILWNN
VEAFATHRNDCGNLQGMTASFTADHPKMIKQYPVPDASHASIKETVEALLEQGVLRKCNSTVNSAIWPVGKPDGSWRLTI
DYRPLNSAVSCPYPTVASTPELFAKLEKKYQVYSSLDISNGFWSIRLEEECQYLFAFTFDTQQYTWTRLPQGFHASPGIF
HQALYNGLASCKTAIESQGCKLLQYVDDILLMSEDRDHHLRSLAILLQGLKDLGVKINPKKSHFCKDQVQYLGVNVGADT
RSLIDARSQLIRTLDIPLTVQGLRSALGLFNFCRAWIPEFSRKTQSLYDMLKGDCKSTDKLKWTEDNLNKFKLLKDEVAS
ACVLGLPDPTLPFRHLIGIRQGHFLCSLVQKDDNGMWHVLGFYSRKMTPVESNLGICEQYAECAAWAISACNLVSGFGRK
IIVTSHSPVKFILQTTPNVSNQRLARWHRILTQEDITIETDASIQGWFVPEPYEGEQHQCRPHDDTITWRVSTRAMPTGE
KWWIDGSRYWDHDKGGYVTGWAALREDKKNQLGGALEGHVSAQVAELVALREALRLQRPLTLYTDSTYVLGICTKYLAVW
KRRGMVNADGSQISNQNILQEIWQLIEHDSTQTLGIVKVKAHTQRKCSTHEQQLNNDVDQPAKQYAKEEPNMSVIAPLQV
YPLWIGLVPCKEPKLWENIQHHITKVDLPDFQKQLAEIMPQQDISHCTLAYFDKPSPEATKYHDKIKPYLGKGQQLTLCD
TYIGKEGAAILGQLRPDMQALHQAEGEVHVSLGTRAGHCPQELGTMLTNLLKSTQERIWQDPPVFKLHDETGKVQGYVIK
TTLGMKTWIMNDHLVTQSEQTEGRAKLSSTEGYALAQQYHHLYGHPSEESLRKVLTKRFVWEDMGQHCKEITNTCLTCAK
YKVLRAGPPMGVGRSAEGPCQKLQVDHVGPLGPGTHGYRYLTTMVDVYTGWFWAKPCRGPTTGATIAALEEHISIWGVPY
SIQSDNGTAFTSKAMQEWANTYGIEWKVGAIYHPQSQGKVERKHRLLKDRLKRATHEGKNWVQALPSILLFINSMHPRDQ
FSAYELMTGRVPHLGGYHPHPLETAKEEEVRIFLRATHDCMQNKKWEEQLEKVTKAEAHSHWTQRSPNLEPGCIVLVRKF
TGDAFSPKWEGPYVITETTKYAAKVQAMSDKVTQHSGWIHRTHLVLFPSQNKRWADPGNPGNQPDEDCTGKKGTVSTADM
SPTTSTTRDRGINMGTEQTHRRRSPRFQRGSDSPSGGQ
>TguERV6_env#LTR/ERV1 5956-8064 [Taeniopygia]
MRKTGTPGGQSGREGTIPPLKNISAVEKMAYPVTCSNQVDRRDREVGSGXEGPSQTLKKNVNHHGYENGDNGXRENGNVK
LSMISNILPCSAYHSILRVFMFVWLPLQSATVNIHEPFKWTLSRWEDHDTRHILQTITGPGAPSFKIGICDLTRSSKCGQ
LLNLTSFYMCPASNPGKQYCNYPRHYYCAYWGCETIASAWAPGGGLDKYLKVGHGPAGCKRPREWPWTGKNLLGNCTFLY
LNVTQPSDSGWLIGKTWGVRHWIEGHDPGNLIQIKKEVAPHDPSPIGPNPVISNDLKESNKTRDNVIKSNKXDQEPQILV
QKYTTLWKIMQATFGVLNHTYPNLTKGCWLCYMINPPFYEAIGITSEAREINGTNPKECLWRKGRDSVSGITLSQVSGQG
RCVGKVPADMRHLCNTTISINRTNKPSDWLMPAVNTKWVCQQLGVTPCLSVKAFNNSDFCIQVLIIPRIVYHPKEYVLEH
QMTPEHYLAKREPLTTLTVAILLSLGGAGVGTGVASLVSQNQGMKALRTSVDEDLSRIDKAISELVKSVKSLSEVVLQNR
RGLDLLFLQQGGLCVALQEECCTYVDHTGIVKDTMAELRKQIEQRKRERESQQSWYESWLTYSPWLTTLLSTLAGPVILL
ILVLTFGPCILNKLITIVKNRLEAAHLMMVRPKYEPLSEVETEDYLELSKRELERFSEQKEG
>ZVERF_gag#LTR/ERV1 gi|21070179|gb|AAM34208.1|AF503912_1 polyprotein (split gag and pol) [Danio rerio]
MTTYKETWDGICKQIIHHTEPKDRKKISKTLESQWTYLSGLNGWTETTKNQGKLLNILLTEEKRADTDLVLARQNRDKTG
VWKKGAANREIEKAEDRLRQWSRVAAAMVTKVKSAVWADQRDSPERPPPYSSAEEKPKTPSAPMQMPVMIVKGGEIETTT
KQANKDFKFMIKQGAIEVEETEEDKKQRQLKMALKEVQTKVEIEEAVKKEIAKQFTANIQLARDSVNQTMSRVAGMEEEL
KRNLNEEEGSVRSEGTTSVGGTCEDRDKIVVSGYQLDVDWGRGAALQREHRAQGPELDSLSDRTKRWVHAEENREQQMPL
FMKNLHSTPKLVMPLIRAATGRKEYKPWGHTDMNAVLSKLPEITKGGQRWFTKLLTLTHGTDLALGDVRALWGSILTRTQ
VELIEREANTTTEENEEPLNRFSTEVGSAMRRIYPTPKLTYQSIKFKIMTGESASAYLHRCEAEWEDRTGENPDSSDICK
EFFRQAVIKGVPASAVVAIENSPDMQGGEGVVWTRHFIHHVDKAVERQGKEETEVEKLKTQLLKMQIEAEKEKGKKKKEN
LQLPVLTGPGVEGARSPVHNIHPISGHINSPHGIPDSYPYGPSPNWPPSGNQNQNPVMQGCFGCGAQDHWKRECPYGGQR
GQPPARGRAPGRGGPQGGRGRGAPRNVSWYSNQQVPRQSPVWGPLDHADY
>WEHV2_pol#LTR/ERV1 gi|4809000|gb|AAD30054.1| pol polyprotein [Walleye epidermal hyperplasia virus type 2]
DVDCQGAQVYANQDAEVMVTLNGTQIPMLVDTGACLTAIGGAATKVPELTLTHKTAYAMGISAEPVEHIKANKIRLQIDD
ASCSIQPWYNKNQTFHILGRDTLSKMRAIIHFHPDGEMEVVFPAKYHQLSLRYDTPEEKLLLQFPDSLWASSPTDIGKMK
IPPIKIEVLPLPCPRIRQYPLPKEKVNGLRPMIESLLAQGVLAECHSSCNTPIFPIQKPGRQEYRMIHDLRAINEIVAPL
TAVVASPTTVLANLSPDMKWFTVIDLSNAFFSVPVHPDSQYLFAFTFEGRQYTWTVLPQGFIHSPTLFSQALFSSLSKIK
DSLTSEVCIYMDDVLIASTTKDINIKDTVTLLHHLADEGHKVSQKKLQLCKTEVIYLGQLLSDRGREILPDRKETVSQFS
SPTTVRQVRAFLGLAGYCRHWIPDYSEQSKYLEELLKKEVEEPFSLTEKQTEAFQKLKQSLITAPVLAIPDYKKDFELYT
SHTEHVAIAVLSQKQGGRSRPIAYLSAKLDAIERGLPPCLRACASIHKNLTQADSFLLGRPVKIYTTHSICTLLQRDRSQ
LVTASRFSKWEADLLRPELTFVTCTAVSPAHLLATATSGDTPPHDCVLLTHTMSRPRPDLSDVPLPHPDLILFTDGSYSK
GEGGGAVVEYVPSTDTFKTVSACSGFTSAQTAELCALTSACLHAKSKSVNIYTDSRYAFGVLHDFGHLWQHRGFVTSAGT
PIKNHNEIQSLLEAVMMPEQISVMKCPAHTKGMTLEIRGNAAADEAAKKAVSCRQGVLREDAPEETMPSQFLSSAPKGRN
SCRYKPQNQGINWHDTSINAVLKNQEKDDVTTHTITLTYSHEDQNFIGGRGHGSGVYWNGDKMIPPVAMLPDIMRAIHGV
SHTHKGGMLAYFEKLWWHPLASKSIDEIMAKCAVCLKHNPKYKRRKGGHRPLPNGPFSHLQIDFVHMSDKKPMYALVIVD
VFSKWPEVFSCNNEEAKTVCNILMQDIIPRWGLPEQIDSDQGTHFTSKITQELASSVGVSWKLHCPGHPQSSGMVERLNR
TIKTKIEKAKTHLQLDKWYKVLPFVLMELRAIPKKNKLSPYEIVMGRPMKLDTLSNMSPLWASDTLITYMNKLTHDLSAY
HTQVAEAWPTTILPPGPEPGSWCLIKSLTKKPTVWEGPYIVLLSTPTAVKVDGKPSWIHLDYCKLLPSSSVQQDEPEEPS
PHSSTDLERKPLQPTVPPVSRISAPSPGSSMPRRSTRILERTKKSL
>ERV1X1_ML_env#LTR/ERV1 5521-7485 via tfasty with MDEV_env, 3 frameshifts. [Myotis lucifugus]
MASLLGSMPLISSLHRHRDLNGQWKGLITLLSFVFTVSPCLTKPMASNPHAPVTLTWEVINPTGQVVWSTKGVHTPGSWW
PTLSPDVCQLALGLDTWDIPEIEDPNKIPSATGGRHLLYYGWFPDDHAPGCLNSGKRTSLGRLTFYVCPRDDRSRSKCGG
PESLYCAAWGCETTGSAYWTTRSSSDWITVHWSNKRGECETEALCNGLNISLTERGRRADKLSHWYKGRTWGLRFYASGY
DFGLWFTIKLRQETTPVPVGPNPAVRPVSPLRPHYLAGPVTTPQVTNPVRTPSSGAPTLRSPSGRFPLFNLVSGAYTALN
ATQSNLTRSCWLCLSATPPYYEGTAVNGTYTLTTSSACSWGENHKLTLPEVSGRGLCIGTPPLSHQQLCARTVLVNSAAE
YLAPEAGTWWACSTGLTPCISTAIFNSSYHFCIMVRLFPRVLYHDAGSFEEMMGERVTRFKREPISLTIAVLLGVGTVVG
IGTGATALAQGSSHMHQLQTAIDQDLKELETSITALKDSLTSLSEVVLQNRWGLDLLFMQDGGLCAALREECCFYADHTG
VVEESMTKLRQRLAERQKEREAQKSWFESWFTQSPWLTTLLSAVAGPLIILLLILSIGPCIINRIIGFIQQRIGDIKLLI
IRQQYSALAEPEGL
>ERV1-1_XT_pol#LTR/ERV1 2850-5927  [Xenopus (silurana) tropicalis]
MASEKVTVPLKVVDPVTHRSVQCSFVYSSICPINLCGRDLIGDLRLQIHPGPASLEVKRDIAHTPKERFWYGLTFEATDL
KAELKGLAGPSLPLQDEVDKPHITLHVTHDRDEPYELNFPEGAILQVCLITMWAKDEFVLFEATLTTPGIFQIQRSLPHI
SLYKSHYDSWELGGAKLFEWASEGKEGGVSIDPVRITGRMTYGNLTDTFTHEQPFHELSAVPDCLWATSKTDVGLILNAE
PVVVIPKSDYRPFKRQYPLKPEALQGIEPVINGLLSAGVLIPCDYSPCNTPLFPVLKPATGEYRMVHDLQAVNAAVIPRA
PVVPDPNTILNNILPSCQVFSVIDLANAFFSIALAPDSQFWFAFTFKGKRYTYTRLPQGYCESPAIFSMEISRSLEPFPV
PENCTLLSYVDDLLIGAPTSQICFEVTLALLIYLAKAGHKASKAKLQLCQPTVKYLGQLISAAGRTLDSSRTSCIRTMSP
PQTKKEMMSFLGTVNYCRAWIANCSAIMKPLYDSIHNMPMSLADKLLWTPELTVAFNACKNSLVDPVVLAFPDYSKPFSL
FVDCKDKCMTAVLTQKWGDKFRPLGYYSKPLDSVALALPHCVQSVIAAAIAVEATAAIVLYHDLTVLVPHAVHALLLQDK
FSLLTPARLLFCTATLLGQPHLTVQRCSVLNPATLLPSTHTASAEHDCLDNTQVSFLPRPDLKSEPLSVGTTVFVDGSAS
KDPAGTNKVAYAVVTHTDVLEALPLPSSYSAQAAELYALHRACLLFRNKPVTIYTDSQYAYSTCHTFAAQWKNRGMVSSS
GKPIKHSALLQSLLDSILAPSALAIVKCAAHQTDSSPVSKGNNFADVTAKAAAQPPSPPSILSSSSTYPITLSSDELKFF
QTNASPQEHAKWTADGATLSPTGLWNVQSKVCLPRSMFHLLALVTHGLSHVSTGGMVTTAQQHFHCPGITTFFKKFVAQC
AICQANNPAKGIKAPIGTTPTTPYPFHTIALDFVEMTPSEGKKYILVIIDTFSGWIEAFPSAKADAIAVAKPLTREIIPR
WGIPEKIISDNGSHFVNEVIKQLTTSLGIQVRHHCSYHPQSAGKVERANGVLKNRLSKTMNQTGKSWMWCLPIVLLNMRI
TPKPKGLSPYEILFGRSYRLPQLPDLPYPDEWELADYLRHTCKQRTNNPGNPPDGPPVTDTVVQPGDWVWVKIIKRKHWN
TPRWEGPYQVLIATPTAVRIAERPSWVHLTHCKKAVTPTLG
>ERV1X1_ML_pol#LTR/ERV1 2140-5660 via tfasty with PERV-C_pol, 1 frameshift. [Myotis lucifugus]
GRRGSDPLPELRVKFDVEGTPINFEVDTGAVYSALQAPLGPLSTKRSLVRGANGSRYRAWTTKRTLDLGRGKVHHSFLVI
PDCPAPLMGRDLLTKLKARITFNPEGPRVEFLSPLVQQPVVTALTMSMEDEYRLYDSPVKEQDVTRWLNEYPDAWAEKAG
LGLARNQPPVVVALKTSAVPIRVRQYPMSKEAREGIRPHILKLLQGGVLKPCQSAWNTPLLPVKKPGTGDYRPVQDLREV
NSRVQDIHPTVPNPYNLLSSLPPDRNWYTVLDLKDAFFCLRLCESSHPLFAFEWTDPEAGIAGQLTWTRLPQGFKNSTTI
FDEALHQDLGAFRTQHPEVTLLQYVDDLLLAASSQEECKYGTRSLLQELARLGYRASAKKAQLCRQEVTFLGYTLRGGKR
WLTEARKKTVVQIPTPTSRKQLREFLGTAGFCRLWIPGFASLAAPLYPLLKGDTEFSWGSEQQQAFDGIKRALLSAPALA
LPDVEKPFTLYIEERGGVARGVLTQTLGPWKRPVAYLSKRLDSVAGGWPRCLKAIAAAALLAKDADKLTLGQKLTIMAPH
MLESVIRQPPDRWLSNARITHYQSILLDKDRVTFGPPVALNPATLLPDEAADPVLHSCQDILAEEAGIRRDLRDLPLPDS
EVTWFTDGSSFLQDGKRCAAAAVVSRDKVVWSAGLPEGTSAQKAELIALTKALELAEGKKATIDTDSRYAFATAHVHGAI
YQQRGLLTSAGKDIKHKAEILRLLAAVLLPTKLAIVHCPGHQKGSDPVATGNQRADEEAKAAALKGAGVLALVNKTPEED
TTPVTTGSKEQQATSYLQHVHQLTHLGARKMQELLKEQPFTLAATENRKLAEQVARNCRACQAVNAHPSQIPEGKRLRGS
RPGQFWEVDFTEIKPAKYGLRFLLVFVDTFSGWVEAYPTRRETAQVVVKKIMEELFPRFGLPQVIGSDNGPAFVAQVSQG
VAKVLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGIQDWTLLLPYALFRARNTPSPSMYNLTPFEILYGTPPP
VSKVSPTIDKDLLPCTPLLARLKALEGIQQFVWKPLASAYQPGDLKVPHSFHVGDSVFVRRHQTHSLEPRWKGPYVVLLT
TPTAVKVDGITPWIHASHLKPAPPPGPEWTMERTDNPLKLRFHCKPLFDQTDGK
>ERV5_DR_gag#LTR/ERV1 1246-3159 [Danio rerio]
MANTPVESLGLKYPLCRDLINKYSKKWQTRTKNMVTQWPTGGSFDVELCGELEIMIKNYKIRGIMTKKKKETKREKELEV
LNLFKKEGQDKLKSIKKARKMLKETEKETEAKEKMFSSPPPYMHSEGQFPLLKGVMGVAGEFKIEGEIEMEETDVGKEVK
XKKSGVEESVAYIPLDCYKQAREALEKMNTECANKVECVEALGKLRHVNKEIGAEGGGEEIEYIKQKDTEKXLKDANDAI
KHRIVHSDSKENDSEVEESSVEEGKCGKGQKQRSFAPQFPILIKGTQGQYIPWQSQDLEGLVNKLPNIHEGAAKWIKIFE
ENTVGRMLAIGDIKALLAKTVGVTKMGEIFQAADLERAVNTQYADGTVFDPFRPAIWLALRVEYPLRLDPKMLKGDQLGE
VENPIAYVQRHLKRWREDTEGDPEKDPIMATLFRQAIIDSLPCAVKSRLEDVVGLNSKSHKEFCDYVSHAVDQYRKTEQR
LKKQESELQRKLTQLQLEELTRKSKKKVQAAVVTEEGDEAMMAPITAAPPMTQPSPXAGYLLHRNQMTPPIINVYAQEPE
ARWQKRSTQREQKGTSKPYAPTPPGVCWGCGLTGHNKRHCPTNPWESPRGVRGGWHQPHPNPNQGPVNSYRGPNQGY
>ERV3_DR_pol#LTR/ERV1 2662-6237 [Danio rerio]
GSSASSSCDAADPRPFVHSLLGGRQCLALVDTGAQISITNIPLKTTSEYMYIDGLNSSELFYKSVPVPLLLADSQNVFWT
EFWVGKNTIETVIGVDILNNLEADVLLSTDKLVLGCNEVIRLSHAGPHQETGCAVASAASESETRPEWKFIISRFSDVWA
KDKFDCGNAQIQPLSIPGPLHEAKHQYPLKNDAREGAEQVVRELQKRGIIVPCSSPTNSPMWPVKKPDGSWRLTIDYTAL
NAVTTKLHPLVANPATILNELGSENCYFTALDISNGFWTCPLAPDVQLKFAFSCAGQQWTWSRLPQGFCNSPTLFHQVLA
SFIDPLRKEIETEGSVILQYVDDILIASPNQNKHLTAVQLVLKALSDGGFKINLQKAQLAQTEVTYLGQIVGVHGRRITP
ERVKAIIELPKPNTVTGLRQVMGLLNYCRQYVSEYTELSKPLTEALKGGKPGKECIDWTEEIEEAFVSIKETLSSCPALR
HVDARKPFHLWTWVGTKSYSAALGQRVPGRKSYGMIGYYSTPIPISMAGQHPCLLICDCAEWAVKTTEDIVCYQKVILHT
KHQILKLLTNTRLGSISNQRRAKWEATLLSKNVDIHTDTDATITPASLLPDEGNAHNCAQVLEEDIRSPLDTKPLPDAMK
LFVDGSSFHEQGNRYTGWAVVNEHCETVDCGSVSGGGAQVAELIALTWALQLAKGKRVNVYTDSRYAYGVVHDFGPVWGR
RGFLTTAGLPISHQKQVMELMEACTLPAAGAVIKVTGHSSEMSLEAKGNHAADAAARGAAKQTNKLVSVMALSPQEEEVH
SRDIFELYAADDPEELEQWVKLGAHKASDGLWKFHDKFVCLSSARTELMSLYHGLAHAGPEKLHAMISKTWWWPKQRAAC
VDFCKRCLVCLKVNSPSKLKIPLGHAPRPQGPWTHLQIDFIGPLPPSGGFSYILMIVDLFSRWVEAFPLRTCTADATAKT
LLTEVFPRWGIPLQIDSDQGTHFTGKVMKHVMKLMGITQHFYISFRPQSSGSVERTNRTLKAALRKRLLEWGKGWHAAVP
MILFSMRASPNKTTQISPFEIMTGRFLRLPWDAPLQHEGPSGPLKDALQNYLKALDCCLKDTRVSVNIRQAEKDNKEQLT
VPVLPEIGDSVMLQREIVSPLGPKFDGPYQVLLTTNTSVLLDRGILGTVWKHWSQVKPIEKCHIQETAPQT
>CarERV2_pol#LTR/ERV1 2497-6042  [Carnivora]
GWSGSFDIKTTEPQVTLDVEGKFINFLIDTGATYSVLIQHSGPTCLSNHKIVGIEGETKTCHQTMPLTCKYRSQLVTHVF
LVLPSCSTPLLGRDLMYKLGSRFALTKEEDGLFSLTPGELKPYPDIPSNIWKEVNPQVWDCDVPGRALKAQPVKVTLKDP
ATIPHKRQYPLKPEAKAGLQPLIDKFLKHGILRPCQSPYNTPILPVKKPNGEYRMVQDLRAINEAVVPIHPIVPNPYTIL
TQVPGDANWFTVLDLKDAFFCIPLSEETQPLFAFEWASPSSPQAAXLTWTVLPQGFRDSPHLFGAALSKDLRDISLPQGT
IIQYVDDILICSPTKEXSDSNSITXLNFLADRGYRVSPKKAQISKQKVQYLGYELTPGHRTLSTDRKKAILDLGPPATKK
QLHTFLGMAGFCHLWIPGFGLLAKPLYDSIKGPDEEPLLWTKAQQTAFQTLKAKLSSAPALALPNLEKPFTLYVAEKQGQ
ALGVLTQKLGNETRLVGYFSKSLDNVAQGWPACLRAVAATALLVEEASKLTMGQSLTVMTPHQVQSVLETKGHQWMMGGR
LTKYQAMLLDTPEIILKTCQTLNPATLMPXPDHHTSMLEHDCSEIIDLVYSSRPDLKDSPIENADDSWFTDGSSFMDKGE
RKAGYAIVSLTKTIEAKALPVNTSAQKAELIALTRALQLAKGLKINIYTDSKYAFLVLHAHGAIWKERGLLSSHNSPIKY
GPEIITLLEAVHLPKEVAVIHLRGHQKDMTLESKGNNLADRAAKQAAQNKQILSLIPVLTPIKSITPVYSDQEIHIAQER
GYSKNAQDWLVNDEGKIFIPKNNQWKVIQGLHQATHLGKXALEHLIKNIFDGVNLTTTIKQVCQSCIVCAQVNPEGAVCP
PPPLLKPVQRRGTYPGEDWQLDFTQMPPCKGYKFLLVFVDTFTGWIEAFPCKTERATEVTKVLLREIIPRFGLPRSLQSD
NGPSFTAQITQQIAQALKIKYFLHSAWHPQSSGKVEKANHTLKRHLTKLSLETQENWVTLLPIGLLRMRTAPKQPLGLSP
FELLYGKPFLTVDLXLDEDYNALLNYSLEAGLIHKLLNEYTDHMLPKPDLTITESPPHVSPGDMVYLKDWKSNTAGDLNP
KWKGPXRVILCTPTAVKLEGHSSWTHISRIKPVPPSQETSEQTNVPSYSCEPVEDLKLLFK
>SpDirs1_yr#LTR/DIRS from retrobase Now DIRS-4_SP in RepBase. [Strongylocentrotus purpuratus]
PLMLQVMRQHFENRGLSRRTVDIITASWRASTCKQYQVYITQWRRFCHSRNTSYLQAEVETVLEFLSSLFHDRNLSYSAI
NTARSALSTFLILVDSNQTISTHPLITRLMRGVFQLRPVVPRYTEIWNISPVLNFLRKLSPVNSLNLRDLTLKVCMLMAL
VSAQRVQTLHILKTNKMTLKGGFVVFHLDEHLKQSKPGNTDFNFKLEAYPPDRRLCIVKYVKHYVQRTGPLRGNENSFFV
SYTRPHNRVTTQTLSRWIKTCLQRAGVDTNVYKAHSTRAASTSAAAKAALPMDQILARAGWSSEKTFRKFYRKPFENKRN
FTQAVLQDSTLL
>DIRS-10_NV_pol#LTR/DIRS 987-2892 via tfasty with SpDirs1_pol, 1 frameshift and 3 stopcodons. [Nematostella vectensis]
PEQAKKPEQPGCSLPRQELPSQGEPAAERAKGLLSNTNVSNHAMSFRAGNIANFFDAWRELTSDATILDMVKGCHIEFGT
EPVQHNLPKSFANQSQLEKDIIETEISKLIQKGVIQKATPCKEQFISSVFTRPKKDGSFRMILNLNQFNAFITYHHFKME
SLQSALTLVKPGSFMAVLDLKDAYYSVSIAxEYRCYLRFVFMEQLxEYVSLPNGLASAPRMFTKLMKPVYSSLRAKGICL
VGYIDDIIILADSPEELRTALKETRDLLTSLGFFIHEAKSSLTPSEEVKFLGKVASVIGLMVSSFPGVRYGPLFYRQLEN
EKTVELKHNGHNLDATMELSTLAKEDLKWWTENVELSPVPILVPPANAILKCDSSLLGWGSVIDGSNNVTGGRWSPDEAL
FHINFLELKAIKLGLQSLCSHMCNTHIKVLSDNQTAVAYIRAMGGTPSDLCNQMTRETLLWCKQRNLWLKSSHLPGHxNV
TADKASREFKDNTEWSLDISAFNRLVAQWGQPCVDMFASRPNNKVQKHVSWKPDPTAFAIDAFTIDWAQYDLIYCFPPFS
LIGKALQKIQACQCTALVVAPLWKTLFWYPKLLKMLMKPPIPIPMTRKTLALPRRPFTSHPMYPNLKLIGCLVSG
>TcDirs1_yr#LTR/DIRS Tribolium.castaneum  from_retrobase [Tribolium castaneum]
LTPYFTQSTSPSASEAFPGGRTLVEKGLRKQGVPREATKITLSSLAKGSLKQYTCELKLWWEFCQRNGHNCLDFTVQNIL
TFLSCRFHQGASYNTLNTCRSALALLLSPEVGKDHRIKRFLRGVYRIKPSKPKYDVTWDPAVVLDYFERLGANQELSLEL
ITRKLATLMALVTAHRVQTLAAIRINNILFSAEGVEIRIPDVIKTSGPHKFQPLLRLPKFKKKPLLCVVSTLSCYLERTE
LLRSSGETRLFLTHRKPFHPASTQSLSRWIKMVLAESGVDTSIYTAHSTRHAATSAAARKGISLDLIRKTAGWSATSRVF
ATFYNKPLIHKEIFANAVLT
>RELIK_gag#LTR/ERV-Lenti 101-1531 [Oryctolagus cuniculus]
MGGTSQSKEYRQALVSIEKVKVLPGQAPRGKKVKCYSPGNVTWACKLAAACTGRDLQDLQTLEEVENLLEEFLQKGEGAT
TGKDYKCAVDTLKVLICCGKGLNPKNTGDACKLYDAIAECRQKPQVVPRELSKEEKAKEQSAYPIMLRGGRQEYEPVGPG
LIAAWLKQVQEHGLTHPATITYFGVISVNFTSVDINMLLNVTPGFAAEKQLVIDKIKEKAIAWDEMHPPPPADAAGPVPL
TSDQIRGIGLSPEEAAGPRFADARTLYRTWVLEALQECQRTISGAPKAVSIRQGPKEPYPEFINRLFTQIDMETSREDLR
TYLKDTMSIQNANEECKKLLRNLRPGDSLEEKMYACREFGSTSYKMAMLAEALKAGDRQQGSRSFQGNCYRCGKKGHMAR
NCRSGEKTPLKCYNCGRTGHMAKVCRQPKNGKAGGNAPRTMMASAQNIQSSIPPSAPPLGETQTEAPATGIYPKLPK
>DIRS-35_NV_yr#LTR/DIRS? 4-825 Outgroup with SpPat1; closer to Ngaro really. [Nematostella vectensis]
MPALHYHVALHLQWLMLDANSPAPLEAASHGITWAHQIAAYPSPTEHPLVKQVMAGAKRILARPKMKKEPITVVQLEQLV
KDKDKAGPFASLYDLRSVSLGLLAFAAFSRFDELANLTLSDLTLREDYLEISIKSAKTDQLREENCVLLAASQKSTCPVS
IISRYLKVAKLNYEDFIFCQISKCLTGYKPRAGKRKLSYTRLRELVLEAFSGIIPNITDIGTHSHRSGGATAAVAAGVAD
RLFQIHGRWKSSCAKDGYIKDSNIAKLSVSQSL
>ERV8_MD_gag#LTR/ERV1 230-1687 [Monodelphis domestica]
MGNSLSVVPKFGGGGQQPKEPPRNTAASYMVSKYGPDASKYLEKWQAMTKANPKVSWPRWGSLNEERMLFLQSVLSEAGR
EIEGDEREVFNQWLEEYTQRKHRSERSVEQETGKNKRKVREEEENQGEQGREATKKQIADLQKEVESLKELLKGSSNPAT
SLDSIPEPLESPEAPIPQFPFKIKGREGTKTMQVSFTPWTKTELRAMAKEFPKVRENPIEFAKEFELTLSTYQPGLSDLY
QLAHILVGSGDAAHWFKTASWENPLEYINQLMARKEGPEVHLQEAKKMGEALLEAIPKAFPKSVNWGKIQICTQKEGESV
FDFYNRFLDTFRANSGLSPDSPDTLITFNTLYVEGLNKALANLLKRGKVDWNLTPTPDLVYLASKFQQTLTEEKEKAAEE
MTKKTNQIMNLQLKHWEQKEKRPTEPYSAEKAGGRQRAWRCHFCHQTGHLKKDCHRLQGKRERRQGKFQYHSGKFPRKEH
HEEASQ
>HERV-Fc2_gag#LTR/ERV1 366-1829 via tfasty with MacERV5b_gag, 1 stopcodon. [Hominidae]
MGGAQSKIDPKTPLGCLLANFEALGLSMDLKRKRLIFFCSVAWPQYKLDNQSRWPPEGTFDFQILQDLDNLCRRQGKWSE
VPYVQAFWDLRSRPDLCAKCSLGQVLLAKASPSNKEPDSSPLSEPPEALALPPLPAALPPPYPGSSGPTPTAPPLPPTPP
SSPANPPASALPPPSPVSAHTRSKTDLLCPLREVAGAEGVVRVHVPFSLTDLSKIEKRPGSFSANPTLYIKQFRYLCQAY
DLTWRDLHIILTSTLSPEERERVQAVARQHADQIHLTDPAMPVGTLAVPAAEPDWDYQAGQTGRRRRDQMVQCLLAGMQA
ASNKTVNFDKLREIIQGSDENPAVFLNRLTEALIQYTRLDPTSPAGATVLATHFISQSAGDIRKKLKKAEEGPQTPIQDL
VKMAFRVYNSREETAEAQRQARLKQKVQLQTQALVAAPRLAGSGSQPKGGSGHRAPPGACFKCGNEGHWAxQCPYPKEPT
RPCPNCHQ
>HERV3_gag#LTR/ERV1 723-2410 via tfasty with GALV_gag, 1 frameshift and 1 stopcodon.  [Primates]
MGGKSSKPTPLECMLKNFKKGYAGDYGIKLTPQRLRTLCEXEWPSFGVGWPAEGTIDREIIGRVFKVVTGVGGQPGHPDQ
FPYIDSWLNIVQTRXAWLQPCLAAYCKTLVARAEPKVKEESASLAATEXKGKPQEGKRNAVLREPPEETEILPXYIPIYP
PLPRPMAPEESNSDGDTPRASPQREESEXQEVREESQDDQAGRLXSGHARAXQMPLRETRGPIYYDEXGXVQGGQWTFXY
QPFSTTDLLNWKHHIPSYTEKPQALIDLMQSIFQTHNPTWPDCKQLLLTLFNTEEHGRVXQAALHWLEANAPXGTXNVQA
YAQGQFPEADPHWDPNDATQFQHLQRYxEALLQGLREGGKKAXNMGKISEVLQGADESPSQFYERLCEAFRLYTPFDPEA
TENQRMVNTAFVGQAQXDIRRKLQKLEGFAGMNATQLLEVATKVYVNRDQEAKREADRRLRKKADLLAAALTEREASIAR
GRGRGRGRGRGQVGQRPESQPRLDRDQCVRCKKKGHWKNECPEGNEGNGQGRETRRPPAKGCRTLREPDTDLIGLAGTEG
YED
>HERVE_A_pol#LTR/ERV1 2148-5738 [Catarrhini]
RGPGSSAPKEPTVRITTGGKDIKFLVDTGAEHSVVTTPVAPLSKKTIDIIGATGVSTKQAFCLPRTCSVGGREIVHQFLY
MPDCPLPLLGRDLLSKLRATISFTKQGSLQLKLPGTGVIMALTVPREEEWRLFLTEPGQEIKPALAKRWPRVWAEDNPPG
LAVNQAPVLIEVKPGAQPIRQKQYPVPREALEGIQVHLRRLKAYGIIVPCQSPRNTPLLPVPKPGTKDYRPVQDLRLVNQ
ATVTLHPTVPNPYTLLGLLPAEDSWFTCLDLKDAFFSIRLAPESQKLFAFQWEDPESGVTTQYTWTRLPQGFENSPTIFG
EALARDLQKFPAKDLGCVLLLYVDDLLLGHSTAVGCAKGMDALLRHLEDCGYKVSKKKAQICRQQVRYLGFTIRKGERSL
GSERKQVICSLPEPRTRRQVREFLGAVGFCRLWIPNFAVLAKPLYGVTKGGDREPFEWGPLQQQAFCKLKEKFMSAPALG
LPDLTKPFTLYVSEREKMAVGVLTQTVGPWPRPVAYLSKQLDGVSKGWPPCLRALAATALLAQEADKLTLGQNLNIKAPH
AVVTLMNTKGHHWLTNARLTKYQSLLCENPRITIEVCNTLNPATLLPVSESPVEHNRVEVLDSVYSSRPDLRDQPWASVD
WELYVDGSSFINPQGERCAGYAVVTLDAVIEAKPLPQGTSAQKAELIALTRALELSEGKTVNIYTDSRYAFLTLQVHGAL
YKEKGLLNSGGKDIKYQQEILQLLEAVWKPQKAAVMHCRGHQRASTSVALGNSRADSEARKAASTPYRASVAAPLLPQTP
DLVPTYSKEEKDFFHAEGGQVIKGGWIRLPDGRVAVPQLLGATVVLAMHETTHLGQESLEKLLGRYFYVSHLPALAKAVA
QRCVTCRQHNARQGPTVPPGIQAYGAAPFEDLQVDFTEMPKCGGNKYLLVLVCTYSGWVEAYPTRTEKAYEVTRVLLRDL
IPRFGLPLRIGSDNGPAFVADLVQKTAKALGITWKLRAAYRPQSSGKVERMNRTIKNSLGKVCQETGLKRIQALPMVLFK
IRCTPSKKTGYSPYEILYHRPPPILRELPGTPRELGEIELQRQLQALGKITQTISTWVNERCPISLFSPVHPFSPGDRVW
IKDWNVAPLRPRWKGPQTVILTTPTAVKVEGIPAWIHHSRVKPAAAETWEAKPSPDNPCKVTLRRTTSPAPVTPGS
>HERVFH19_gag#LTR/ERV1 601-2260 [Primates]
MPRTKTDTLGFFSPVHMGAKQSHIPTSSPLGCLLHNLAKLGLSGSIKPKHLVFYCNTAWPQYKLDNDSRWPENGTFDFQI
LRDLDNFITRNGKWQEVLYIQAFFYLRSRPSLCQACTPHEILLLNENPLWVSPSSGTPSSKTLSLKTPSSETPFDPADEP
PPYSHPPASAPHPSEPSAPVAPPAPKPLAPNPAPLPSPPVTRSKATSQTTPAILPLWEVAGVEGIARVHVPFSMSDLSQI
KQHLGSFSENPSHYRREFLHVTQSFNLTWHDIYIILTSTLTPDEKERIWCSAETHADELHNQAPIQNPVANDAVPHRDPD
WTYQQGDNGIRRRDHTITCLLAGMDKNAHKAVNYEKLREITQEPQENPALFLSRLTEAMLKYTNLDPESREGQTFLHLQF
ISQSAPDIRKKLQKLEEGLQTSQQDLLNAACRVFNNRDEEQKIQKDKHLRLKYQMLASAVQKSVTQKPPNNPKGNSPTSL
GVCFRCGNPGHWAKACPNPRPPTKPCPTCGLWGHWKMDCPQRGHPPRSSAAHNEAPRPSQEEISSLLALTTEDR
>HERVE_gag#LTR/ERV1 547-2162 via tfasty with HERV3_gag, 1 frameshift and 4 stopcodons.  [Primates]
MDQTQNKPTPLGTMLKNFKKGFNGDYGVTMTPGKLRTLCEIDWPTLEVGWPSEGSLDGSLVSKVWHKVTSKSGHSDQFPY
IDTWLQLVLDPPQWLRGQAAAVLVAKGQIVKEGFCSTRxGKSTPEVLFDQTSEDPLQEMAPVIPVLPSPYQGERLPTFES
TVLAPLPDKCIPRPLRVDKRGGEASGETPPLAAHLRPKTGIQMPLREQQYTGIDEDGHMVESRVFVYQPFTSADLLNWKN
NTPSYTEKPQALIDLLQTIIQTHNPTWADCHQLLMFLFKTDERxRVLQAATKWLEEHALADYQNPQEYVRTQLPGTDPQW
DPNxREDMQRLNRYRKALLEGLKRRAQKATNINKVSEVIQGKEESPAKFHERLCEAYCMYTPFDPDSPENQRMINMALVS
QSTEDIRRKLQKKAGFAGMNTSQLLEIANQVFVNRDAASRKETTxRMNVRPGETRLLAAAIRGVPPKEARQKGGPGKETQ
PGCQSLQCNQCAYRKEIGYWKNKCPQLKGKQGDSEQEAPAQGGRGPAQPSRRVIGLRGT
>GGLTR11_gag#LTR/ERV1 2880-3980 fragment [Gallus]
MIVNKKKKKKRNEGRNPLLDLLEKHGAKPSPVEMEWAQNNWSNLEGVADHINSLHKQTRMGEGKGKSIICAVLGAALTAA
VEIRNEQHTAETQIIQSLQELVTYLQDQVEDLRGQSEKEKHSKVLLQQALREQLVNEREINASSPGSDFYPGESLEDVRA
QKDKSENLVTLLCPPIETGHAYEESEGGYSDVSIKEVPYSATELAKLKKDFGHTPRKSETEYVWKVPLTGGXQILLIEKE
SEGYWGPGIFFTTGNHCAPWSLTQRAAYWDDYSPGQLMLIDLPHIGPVPLTLKEPLNKYIWKAQDDQGKMYKINHLDFTY
LLTLVHLGPGKFFLFCFVFFSSYAFSNLGSSGTGKFSLFCFPDANEC
>ERV24_Prim_env#LTR/ERV1 5961-7358 [Primates]
MEKVFLCKFPLNFFLFVPSSYVLLLLSPAVAHEANLFLQWAQDYANRLQKNTCWVCGLMPLSGGSGLPWWVSPFQGQDWI
EYQKYIRVSQEQSSVLNTSMTKDDVHHWPINXTLQSKGHGKSFSVKETSLLALTLALPQLRDKTTRFRDGITQIWDGFIW
LTPSFGQLSQLAPLCWEQKNHTKDTWPNSTRDMGWIPKERCIHTIILQSTDWHATEWAQRPGIYWLAPNETSWLCGTNLW
PWLPPGWLGRCSLGYAWAQGRIVHTLSKPANLPHLQSRRVRSVFHWYDHLASIFLPQLGIEDVIWHVEALTNYTQKALND
SRMGISLLNNEVALMRKAVLQNRMALDILTAAQGGTCAIVKTECCVYIPDESDNITKLMADMKTQITNLSDPTPSLNDWL
XSWFGSWGTWWQKLLLILGIIIICCVLSCFCLYCCCGICLQWSQRTTEKTKIMVAQRIALIEDAAV
>ERV9_MD_gag#LTR/ERV1 72-1592  [Didelphinae]
MFXQVVCGVVVIAAIACFWVYHILYSXMTHMXVETIDYIGNXTMSVLQLPFQXELVLWQVLAQVYVLFMAVLQTLTQXKK
IFRFVVPLKAEKIMAVDNNLESMIKAVFEQLIKEKGLDLVMGKDNGQTENVPQENEGDNENKPVXEPEKICPLKEVTKLS
SNAGVIHSKAHRQFTPQELESIKCHFPKFVENPFKSQKELKXAFRIFDPDFEDVEFLLSELFSPHEQRQFLEKTRSDSNL
TSWPTVEQRVDMDFANPTCMSYLRKCREDLLQAIKQCCSKPNAWAKFDKILQNKGEHPATYIDCLSEMADSILGLEADSE
ESASHVHRQFLRGCTPNLKTFFKHYFPKYDSVTLIELSEAATYLHDNNSEQSKQVQDLKEKLERTENNXKQKEIEEIKNL
NTVRTYTTSSYKKPSYKEKPVQRETRECFFCHRKGHLIRNCFLKKKHEINNKNTQNAQTRYKKSTCCSHCKLKSSXQAXD
LHEMQNAINSGAKPKYSDMVRKEL
>ERV25_MD_p2#LTR/ERV1 1864-2739 protein unique (so far) to marsupial ERVs [Didelphinae]
SQKNTRFNAQRVQGRKTGDVTPGRKIKQVVVGELKSVEKEGGNKNSKQREIQEMERELQNDIXDMKNKVFESYRGIEGSN
GKTKEQIKKYLENFLICKYGLGMESTKNCNKSSSHKQHHKITVTAKEHCIDSLNPKDKVANKNYETVQEEFKIADPTTHT
FIPPQAKGHEHTLTXKEQQEKLKESXNKSTLDPTAKDFYPQHLEINDHKPSIQTNEKRYWKGKSXVQNLFHNDKLSLEPE
TSTHSKEMVKGEQSKELTXKXSLSSSEPXNSNRLNAGGLSDSTFRGCHAN
>FeLV_gag#LTR/ERV1 gi|120817|sp|P10262|GAG_FLV GAG polyprotein. Contains: Core protein P15; Core protein P12; Core protein P30; Core protein P10 [Feline leukemia virus]
MSGASSGTAIGAHLFGVSPEYRVLIGDGGAGPSKSLSEVSFSVWYRSRAARLVILCLVASFLVPCLTFLIAEAVMGQTVT
TPLSLTLDHWSEVRARAHNQGVEVRKKKWITLCEAEWVMMNVGWPREGTFSLDNISQVEKKIFAPGPHGHPDQVPYITTW
RSLATDPPSWVRPFLPPPKPPTPLPQPLSPQPSAPLTSSLYPVVPKPDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGP
PPSGPRTPAASPIASRLRERRENPAEESQALPLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQ
PTWDDCQQLLQALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQLLLAGLRGA
ARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVILSFIYQSSPDIRNKLQRLEGLQGFTLSDLL
KEAEKIYNKRETPEEREERLWQRQEERDKKRHKEMTKVLATVVAQNRDKDREENKLGDQRKIPLGKDQCAYCKEKGHWVR
DCPKRPRKKPANSTLLNLED
>ERV34_MD_pol#LTR/ERV1 2421-5985 via tfasty with ERV10_MD_pol, 1 frameshift and 2 stopcodons.  [Didelphinae]
SEPLLESWVTLKVEGKPVNFLVDTGAQFSVLKNPTGSVSSKASWVRGATGTKRYNWTTNHWVDLGRHQVTHSFLVIPDCP
APLLGQDLLHKAGAHIHFTDSGVSVTDSRGSPLHILTLSLCDEYRLHSDPTPAEVPEKVRPWMDLVPGVWAELAGVGLAV
QQPPIMVTLKPGVTPVRVHQYPMPLEARRGITPHINRLKAAGILIPCQSPWNTPLLPVHKPGSQDFRPVQDLREVNQRIE
DIHPTVPNPYTLLSSLPPDFVWYTTLDLKDAFFTLPLAPISQPLFAFEWHDDQMQMTGKITWTQLPQGFKNSPSIFKEAL
TSDLRGFRVGHPHVALLQYVDDLLLAAPTEAACKEATLALLRTLEQLSYRLSTRKAIIVAREVTYLGYKLHGGQWWLTHA
MQKMVLGIPTPTGPRQVREFLGSIGYCRLWIPGFAELAQPLYKGSREKPGWTWSPDMDAAFRALKDAMLTALALALPDPE
KPFxLYVAEKKGIAKGVLMQKLGPWDRPVAYLSKWLDPVALGWPPCLRILAAVALLVRDADKLTLGQALHVATSHAIEGV
LRQPPNRWLSNAHLAHYQSLLLNAPxISFQVTSALNPATLLPDSEPGGPLHDCQEILATATSARLDLSDVPLPNADHVWF
MDGSSFIINGQQRAGAAVVDASGNLIWAAALPEGTSAQKAELIALQKALEEAEGKRLMVYTDSRYAFATLHVHVPIYQER
GFLMARGKEVKHLTEIQGLLSAVRLPKKVSVVHIPGHQKGESLEARGNRAADQAAREAALNAPLLTLPMVILPPPEGEPQ
YSETDLMWIQKQQGKKNGLWYKDPEGNTLLPETLGQLLSTHLHHLTHLGDRKLSQLLEKGQLRFPGRRKFLARLVEACRA
CQLMRSAKPGNHIGHRLRGDRPCQSWEVDFTEVKPGRFGFRYLLVFTDTFSGWPEAFPTKTETAQTVAKKLLEEIIPRFG
FPTSIGLDNGPAFVSKITQAVTAALGIDWKLHCEYNPQSSRQVERMNRTIKETLSKLALETGIDWVTLLPLALFRAQNTP
GPHSLSPYEILFGSLPPILPNPPTSLTPGIPRDLRSMLLGLAALHQDIWPRLRELFQAPPHTPHDFHPGDWVWVKRHRKG
NLQPHWKGPYVVLFVTPSALKVDGIGPWIHHSHIHPAAPPLPSVRKRWKVTRHPTDLLKVRITKDRNT
>HERVK_env#LTR/ERVK 5483-7534 [Primates]
MNPSEMQRKAPPRRRRHRNRAPLTHKMNKMVTSEEQMKLPSTKKAEPPTWAQLKKLTQLATKYLENTKVTQTPESMLLAA
LMIVSMVVSLPMPAGAAAANYTXWAYVPFPPLIRAVTWMDNPIEVYVNDSVWVPGPIDDRCPAKPEEEGMMINISIGYRY
PPICLGRAPGCLMPAVQNWLVEVPTVSPIXRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEIPKESKNTEV
LVWEECVANSAVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCPSAQVSPAVDSDLTESLDKHKHKKLQSFYPWEWGEKGI
STPRPKIVSPVSGPEHPELWRLTVASHHIRIWSGNQTLETRDRKPFYTVDLNSSLTVPLQSCVKPPYMLVVGNIVIKPDS
QTITCENCRLLTCIDSTFNWQHRILLVRAREGVWIPVSMDRPWEASPSIHILTEVLKGVLNRSKRFIFTLIAVIMGLIAV
TATAAVAGVALHSSVQSVNFVNDWQKNSTRLWNSQSSIDQKLANQINDLRQTVIWMGDRLMSLEHRFQLQCDWNTSDFCI
TPQIYNESEHHWDMVRRHLQGREDNLTLDISKLKEQIFEASKAHLNLVPGTEAIAGVADGLANLNPVTWVKTIGSTTIIN
LILILVCLFCLLLVCRCTQQLRRDSDHRERAMMTMAVLSKRKGG
>HERVK3_pol#LTR/ERVK 2635-5403 via tfasty with HERVK22_pol, 5 frameshifts and 8 stopcodons.  [Primates]
MSGFLMGIIDISPRPTALPLEWLCDKPMWVDQWPLTQEKLDQLHLLVKEQLNAGHIEKSFSPWNSPVFVIPKKSGRWxLL
HDLRVINAQIKPMGALQQGLPSPAAIPRDRPLVVIDLKDCFFTIPxHEKDKPQFAFSVSSINHREPVSRYQWKVLPQGML
NSPTLCQHFVGRALKEPxNMFPTVYIIHFMDDILLAAPTDQILHQLFRETKQALTKWNLKIAPEKVQTTSPYQYLGTIVM
EGSVRPQKVVLRKGRLQTLNDFQQLLGDINWLCPMLGIATYQLTHLYQTLQGDSSLDSPRQFTKEAEAELQLVEQMLQQQ
HASWLQPQKPLLLFILPTPHSPTGLLGQFIDKSVIVIEWLFLSNTVKSLQVYLSLITQLITIGRHRSKMLMGYDPDKIIV
PLDSQQQATAWEMSTAWQITFADFVGIIDNHYPSDKILQFYKVHPFILPVITHHKPIPGGQTYFTDGSSKGRAAIYGPKH
TQTIMTSGVSAQRSDLIAVIQVLQLTASDPINIVCNSAYVVNVASCIETATIKNTLDPELLNLFLRLHTAIGSPSSPFHI
SHIRSHTQLPGPLSLGNDRADKLMSSVFQQAQASHAFLHQSTSASTRMFHFSRSQARAIIQACPTCQHVPGAAPVEGCNP
xGLAPNEIWQMDVTQVAAFSKLSYVLRIIDTYSHMLHATCQTGETAGHVRQHCLSSFAHMGITKQLKPDNGPAYTSHAFQ
IFLQLxAITHKQGIHYNPRGQGIIELAHQTLQQVLKKQKGRDRRPLQPQTKLHLALLSLNFFDSWxRWKTPAERHWQVLE
EKRKVYPKVLLKSPGEETWKGLLDLLTWGxGYACVFQGDGQAVWVPSRWMxPWNGRLEEPRVANYGPGPSGLSHEPAELE
CKDGEKADRSPDDINPHNLGATQEYQSGSWETTGASEPGKTP
>HERVK_pro#LTR/ERVK 2012-2947 [Primates]
IPNSAICSSGFSGTTTPTVPSVSGNKPVTTIQQLSPATSGSAAVDLCTIQAVSLLPGEPPQKIPTGVYGPLPEGTVGLIL
GRSSLNLKGVQIHTSVVDSDYKGEIQLVISSSIPWSASPGDRIAQLLLLPYIKGGNSEIKRIGGLGSTDPTGKAAYWASQ
VSENRPVCKAIIQGKQFEGLVDTGADVSIIALNQWPKNWPKQKAVTGLVGIGTASEVYQSTEILHCLGPDNQESTVQPMI
TSIPLNLWGRDLLQQWGAEITMPAPLYSPTSQKIMTKMGYIPGKGLGKNEDGIKIPVEAKINQKREGIGYPF
>MMTV_gag#LTR/ERVK 181-1953 95% identical to gi|9626966|ref|NP_056881.1| Pr110 gagpro [Mouse mammary tumor virus]
MGVSGSKGQKLFVSVLQRLLSERGLHVKESSAIEFYQFLIKVSPWFPEEGGLNLQDWKRVGREMKRYAAEHGTDSIPKQA
YPIWLQLREILTEQSDLVLLSAEAKSVTEEELEEGLTGLLSTSSQEKTYGTRGTAYAEIDTEVDKLSEHIYDEPYEEKEK
ANKNEEKDHVRKVKKVVQRKEISKGKRKEKDQKAFLATDWNDDDLSPEDWDDLEEQAAHYHDDDELILPVKRKVVKKKPQ
ALRRKPLPPVGFAGAMAEAREKGDLTFTFPVVFMGESDDDDTPVWEPLPLKTLKELQLAVKTMGPSAPYTLQVVDMVASQ
WLTPSDWHQTARATLSPGDYVLWRTEYEEKSKETVQKAAGKRKGKVSLDMLLGTGQFLSPSSQIKLSKDVLKDVTTNAVL
AWRAIPPPGVKKTVLAGLKQGNKESYETFISRLEEAVYRMMPRGEGSDILIKQLAWKNANSLCQDLIRPIRKTGTIQDYI
RACLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGGQGSEGPVCFSCGKTRHIKKDCKEEKGSKRAPSGLCPRCKKG
YHWKSECKSKFDKDGNPLPPLETNTENSKNL
>MMERVK9E_gag#LTR/ERVK 330-2078 via tfasty with ETnERV_gag, 3 frameshifts. MMERVK9E_pol broken and almost identical to ETnERV [Mus musculus]
MNQAIVRSFQELLRARGVGLEVQLLENFLDRIDSCCPWFKEEETLDNRTWEKIGEALKITQADNFTLCLWALVKDAIEKV
ISQGSDSTQAELEESQEERLSERTFSEKGSLNSKFDRYRDSDDELILDKEDHSERGAAKYFDEDWPPCKSPAPPMASTIG
DATHRDTQLSKLEFEIRLQKLTNELRELKRMSDTGKSNSSEMYQAPLERAVSQARGRGQDTSDVLAFPVVEVIDQQDTRV
RQYQTLDFKLIKELKTAVAQYGPSAPFTQALLDTVVESHLTPLDWKTLCKATLSGGDFLLWDSEWREASKKTAALNAQTG
NPDWDSNMLLGEGPYEGQANQIGFPVGVYAQIAVAARRAWRQLPVRGDLGGSLASIRQGPDEPYQNFVDRLLIAASRILG
KSDTGSPFIMQLAYENANATCRAAIQPHKGQTTDLAGYVRLCAEIGPSYNQGLAFGAALQGTAVQAMFSRKRGNNACFKC
GSLGHFKSDCPKNKGAESGQAGRAPGICPRCRKGNHWARVCKSKPGILGRPLPGNERRGQPQAPTYPQQTAYGAMNLLPS
QRDQFLNLSGQNQEVQDWTSVP
>HERVK3_env#LTR/ERVK 5285-7200 via tfasty with HERVK22_env, 1 frameshift and 2 stopcodons.  [Primates]
MERRPTGVQTTSTPITWEQLKNTNQEAGKLLEHQSQAKHPDSMFLAMLVIMSCVVCFPCAEAKTFWAYVPNPLVVQPMLW
SDTPPEIYRDQEVWAPGPLTPLTIEQLDSQNNVINYTTPREGLLLCITTKTSLNCSCLIIQAQQWLSHYGKVMCLLSLGS
INVTGVLTNHSRPNHPNRADYMEWIPFDSYYPHLTWTQCLDPLARKQSMLSGDIVDWGPKGLLYGRHENQKSWHKLRWHW
WEDFKASSLYHTGIxSQSATQIAxHGAGFSPPLPQWHYLGRKGPIQEMLWKAALPFMNGASGFGILSSDSNSKQHSLNVT
FVKNITTQFMVCLFNPYAFLATKKDQLQVNNIQLTCKSCQLCHCINHSTLQTHNVSTLIILGRIPGLWIPVNLSQPWATT
PALHFMKHLLTQLTHCARRALGMIIFAIVSLVTLITSVVMSSVALHSSIQTTQYMENWMRIANQAWPLQNKINTELQTEV
ALLKSTALWLGEQVQSLQLQQQLHDHFNHTHICVTNLEYNQSEYPWDLVKAHLQGACTSNITFDIGELQNKILDLNGQTQ
EFQPSLEDETKFQQGLESLNPWTSLKHHINILYVVLGIMLFCLCLLFIVCKTGWTANQKMRAAQPDLTFFQLIHKQKGG
>ERVH_OC_pol#LTR/ERVK 2817-5408 [Oryctolagus cuniculus]
TGHGFFVGATEIQPLPLSWLDNKPKWIPQWPLTQEKLAAVNDIVLQQLEAGHLQPSTSPWNTPVFVIKKKSGKYQLLHDL
RAVNQQMQPMGALQPGLPVPTMIPKHWPLIVLDLKDCFFSIPLHEQDIQRFAFTVPSINHQGPDKRYEWKVLPQGMTNSP
AICQLYVDQAVEPVRQQCPKVQILHYMDDLLITAESESHLMEAYKLLLLYLEKVGLQVAPERIQKGEVVQYLGLKVTSEK
VTPLEFEIAIDGLQTLNDFQKLCGNLNWLRPYCKLTTEDMMPLFNILEGDAQLDSPRRLTKEARLALQKIEKQIKAMQME
RCDPQQALEILIFMEQLYPFAVIWQGEPLLFVYPHSHAPRVLYTQGIAVADLILTAIKKVTEMAGKTPKRCVVPFAQEAV
EAFTRECWQWAYIVLILQIEIDNHYPRHPFVNFCTQVSIKRVQKVRRDPIQGAVTVFTDGAKGGTGAAILNNQRYFVLTA
CPSPQHAELAIIATVLRRESASMNILSDSAYVVNAVQMLATQCLILKSSSVYSYLSENQGLLNQREHAIYIGHIRAHSNL
PGPLTRGNMMADHYSRFLLACTALEQAKEYHSKWHVNTHTLSFKFNIPRKQAEDIIRSCEKCVVIIVPKIPAGANPRGLK
PGHIWQMDVTHIPSFGRQSCVHVTVDTYSGVVMATAMNKEGVQQVIQHCLQAFAAWGVPHVIKMDNSSAYTSTRFAAFLK
EFRISHITSIPYNPQGQAVVGHTHLYLKNLIIKQKGGIGEMATSNKDALALALYTINFLNKKKNGKTPAEMHAQSADKES
IQWIMWKDLQDNQWKGPFPLLRRIRGAVCFFPQGAAQPIWTPERRIRLVNLPAEELEEKNSI
>ERVB4_2_MM_pro#LTR/ERVK 2274-3095 (ERVB4_3_MM very close with many errors) [Mus musculus]
RATTGNTALDLCSSTTRIITPKEGTVVIETGEFGPPPQKTFFLIIGRVSRLLQGLTVTPTVVDTDYHGEIKVLVTATQGP
LTLRAGEHIARALPLPLFGRFPYMKEERGSSSPGSSEVYWAQKITDSRPMLTLFLEGKQFQGLLDTGADATVISLTHWPT
AWPLQPTATHLKGIGQTQDTLQSSKLLTWSDKENNTGTVRPFVVKGLPVNLWGRDILSQMGMIMFSSNETVTNLMLKTGY
LPGKGLGKDEQGRISPIMPTPKNDKKGLGADLFS
>GGERV28_pol#LTR/ERVK 2759-5398 [Gallus gallus]
LAASVWVFPIRLTWITDKPVWIEQWPLKKENLDNVIKLVAEQLQKGHIQPSTSPWNTPIFVIKKKSGKYRLLHDLRAVNA
QMQPMGALQPGLPNPAMIPENWHLLIVDLKDCFFTIKIHPKDTSRFAFTVPATNKGAPAARYEWTVLPQGMKNSPTLCQL
FVDVALEPIRKAWSHAVIYHYMDDILIAQSRPFTTDQELYLERTLQSKGLVIAPEKVQREPPWKYLGWVITQSHVRPQKL
TLHTDIQTLNDAQKLLGDLQWLRPVVGLSNDDLNSLRPLLKGTDPAARVSVSPEQRQIIERLAQTVVERSVDRRDPSLPI
DITVLLGRTQLLAALTQRRKKKGEQADIRVLEWLFTALQPRTTIQQTIDNLAELVRKGRKRVLSIAGEEPGTIYLPIKRT
DLDWYIQNSTELASSLLSSGANLEVRPLASPVLKWMTQRRWLVIPKLSRAPLQNAITVFTDAGRKSRKAVATWCEDQQWR
HRFLRAQPGDSLQTLXLSAVVWAFLNWPLQPLNVVSDSLYVVGLVERVEDARVRELSNQRLYELLTTLRRAIAIRRERYS
IIHIRSHKWQEGLGEGNQRADDLVAVSVPVDRLVQAREAHATFHQNARGLHKLYKISLNEARGIVRACPSCSNFGPXLGL
GVNPRGLGPLEVXQMDVTHVPEFGRLKYVHVTVDTYSKFIWAKAQVGEKVLHVIRHLTVCFAITGLPKTLKTDNGPAYTS
QGFGRFCEKWGVQHITGVLNSPAGQAIVERADETLKRYVSRLSDARDTQEHLARALFTVNYLCMXGEGEETPAQVHSRVP
RVGNTQPVSVEYRNPRTGIWEGPAEVKXMGRGYMCVLTPTGPLWVPAKWTKAAVSIPDPHPQQSGNTPDETTNEPVGDVG
>GGERVK10_pro#LTR/ERVK 2059-2571 [Gallus]
SSAAGKRLGEGASGPGPLPQPAGWAVDDTYAQPASHXGSXLEVHDTPTVALALDCQNRPFVKAFMSYVGLPPDFSGRXSV
PVTALIDSGADVTVISDEDWPKEWPVGTSQVIRGVXGTISTRRSSAEVEIVVVNRDGSLERPALLVPLIARVPGXLLGRD
FLNSVGARITNX
>GGERVK1_pol#LTR/ERVK 2475-5036 [Gallus]
KFILRATVYHLALHFAIPLRWKREASPVWVDQWPLPTDKLAALTQLVSRELEAGHIEPSLSRWNTPIFVIRKPSGSFRLL
HDLRAVNAQLVQFGPVQQGGPSLAAVPRGWPLVVIDLKDCFFSIPLAEQDREAFAFTVPVRNNQGPAQRFQWKVLPQGMA
CSPTICQLVVNTIIAPVRRDMPDCQIVHYMDDLLLAAPTGSQLQALEARVSGALTGAGFTISQEKVQRGPGIEFLGYKFG
SSTVIPEGLEIKPHVTNXWDVQKLVGAIQWVRGALGIPPRLMKPFYDQLKGSDPRERREWTPEMDAAWREILSLCSTASL
SRWTPGIPLEGAVTRCQDGAVAVIGHALGSCPQPLRWLFSAQPVRAFTPWVELLSLLLSKARTXAFRDFGKDLDIVHLPR
FFRDSQILPDEILLALHGFGGKLRYAGSLPIFELARPLRVSLRLRVVASPLDGPTVFTDASSSTGQGAVVWKNQTGDWEI
RTFQDHGVSVQTLEAQAVAMALLLWPDTPCNVVTDSAFIAKMLLRMGQEGQPSTSIAFLLEEALTARTAPAAVLHVRSHS
DVPGFFTTGNALADQHAGHKVLTVREARDLHSTLHLGARALSRTCXIPMAVAREVVQACPHCNSAPALSAGVNPRGIAPL
DVWQTDFTLEPRLAPRSWLAVTVDTASTVIVATQHGRANSSAAQHHWSVCVATLGLPSHIKTDNGSCFISRSTKEWLARW
GITHSXGIPGNSQGQAIVERANRLLKEKLRVLGEGENYRGKIPVSQQGELLARALYALNHFERGENHRTPMQKHWQPRII
EEGPPVKIKIDNGLWESGWSILVWGRGYAAVKNKESGNIIWVPSRKVKPEFGLK
>MurERV4_pro#LTR/ERVK 1724-2623 [Muridae]
TSRFLCQPRSNXQTEKPQLSIGDLMHATAGSAALDLATDKHLTLSPKIQCYKITTGVYGPLPSGTVGMILGRSGLTSQGF
IVHPGIIDEDFKGEIKIMAYVKREMQXNAGDRIAQLLLFPYIKGKAAPVERTGGFGSTGKRVFWQTVVNDQRPKLKLQVN
GVEIEGLVDTGADVTIISQKSWNSEWPLQKVYTQFXGIGKLSQIKQSVRWVKCVGPEGQTGKLRPYVADIPINLWGRDLL
QQWGTQINIPAIPETAHDEXRGEMVDAPGEGIDICHQKQPQAVPIVQTQDITGIEFPNL
>TguERVK6_env#LTR/ERVK 7018-8336 [Estrildidae]
SPRDLGGFLFLGNQVLFGCCCIAGSLTEGGGMDMGFRQIVFMCFILLPIALGNWTDFPVKQPRENVWETLAKAAGLDSIC
LTHSKPGKPFSTCLVGVPVKEWPIPKGIPPEILKTFSDPVEGWQVWTQYLPVAHLEPPELDIFGSTKMKWCIEFNSSGVA
KTDNHTIDVTPNQPFYKNASSWCNHTKMTSKPSLQHPATLPKGMFFICGDRIWPAIPAKIKGGPCSIGELSLLTPDLKTL
QKQTHREKRSLEQYSPNCDDDVSTWNKARRIAVAIFSPQTASGVALTQLDHIACWLXKHSRAISFALSDMLTDISGARQA
VLQNRAAIDYLLLTHGHGCEEFEGMCCMNLSDHSKSIHENIKQIQNSISKLNRVTGSWWDNLFNLFDISPLWKELSKIAF
YILIGLVVLLLVLPCIFVCIRKTLNSMVKRVFLVQTERG
>TguERVK4_pol#LTR/ERVK 3347-6169 (pro-pol ORF artificially broken to give separate pro and pol peptides) TguERVK3_pol 92% similar[Estrildidae]
FRAAVTEERPTQKLNWLSDVPIWVEQWPLNKQKLKALQKLVAEQLAKGHIQETTSPWNSPVFVLKKPGKDEWRLLHDLRA
INNVIENMGPLQPGMPSPTMLPKDWELAVIDIKNCFFHIPLHPEDAPRFAFSVPSVNREAPMERYHWRVLPQGLKCSPTI
CQRYVASLLTPVRTATEGVIIQHYMDDILICAPNDDLLTHALNLTTDALVAAGFELREDKIQKMPPWKYLGLEITKRTIT
PQKLAIKNKIRTLADVQQLCGSLNWVRPWLGITNRDLAPLFDLLKGGEEPSSPRELTPEAQAALIRVQETMSARQAHRYD
PDLPFKFIILGRLPHLHGVIFQWTDTPGKGKGQDRRDPLSIIEWVFLSHHRSKRMTRPQELVAELIRKARARIRELAGCD
FECIHIPIKLESGQFTKAMLEHLLQENESLQFSLDSYTGKISVLRPAHKIFESEIQFALSIKRIQSKKPLKALTVFTDAS
GSSHKSVITWKDPQTQQWETDIVEVEGSPQIAELAAVVRAFERFSEPFNLVTDSAYVAGVVSRAQDAVLQGVSNEALHKL
LSKLIKLVSHREQPFYVMHIRSHTNLPGFLAEGNRRADSLAAAPAQVAPLPDKFQQAKISHQLYHQNAPGLVRQFHLTRD
QARAIVATCPSCKSLPLPSVSSGANPRGLKSCEVWQMDVTHIHSFGRMKYVHVSVDTFSGAVFASAHAGEKAKDIEKHLI
QAFAMLGVPKLIKTDNAPGYTSKGFASFLQQWGIEHKTGIAYSPTGQAVVERTHQSLKRMLKQQTPTMKVESPQVRLARA
LFTLNFLNCSFENLNPPITRHFGNHEQSKVREKPPVLIKNPETWQLEGPHELVTWGRGYACVSTPSGLRWVPSKFVRPYV
PKHQTDKKKDPQVKHAALRRRRKSPPFLFDSAPSLSEPSLSPSSSLDSLFPFDLNLPSPEC
>TvERVD_gag#LTR/ERVK i|7107371|gb|AAF36393.1|AF224725_1 gag polyprotein [Trichosurus vulpecula]
MGSPLSKEQVFLKDLKQSFKERGIRIKKKDLLKFFIFIDKVCPWFIVNGPDIHPGKWQKVGRDLNERLKQEGPESVPINA
FSLWTLINDIIEGSTGDKGARQLLVQAESCLAPLSRAASASSLHAENSQDKEEAKSPPPTPTAKSIYPPLPNPVEETLTF
PVFPTEGKVGMNTAPENESGPLPDENAANLDVEAAAYNPQEVFLSHAFSPHPYLLPPLVDLSQIQRDLTQRMAELRKTVN
MQNQYHQMVKEFSALQASLQKALLPPSAPKSTPIALPQDKIPRPKQKQKSLLFPILRSNTQNRPKDAEDTNSDKHPPENS
AGLEESEEESQEEEVEDDNQESDSEEDNKSCSSKYKAPKFKNIKDLHAAVKKYGPNAPFTLSALEAIGQGGYLLPGEWVR
VARAALSRGQFLTWKAEFEYHCQTIEKRNLKSKANRDWTFEKLAGRGEYALEKKQRKLPTGLLEQTAHAANRAWRALPVT
GSPFTPLNKITQRKDEEYSDFVSRLLETAERTLGNEASDDLIIKRLAFENANGPCRSVLNGQWQDKTLNEMIKLCRDIQD
PTAAKIEKMSQAILALQNPMKNMSEAFLTIGAAVDNTVKTCFKCGAEGHFARQCPMNQPNPTAQTRRAAPATPCPRCRKR
FHWGNTCRATHDIDGKPLPPLSGNGWRGRPRTPQGLAQPATGTHPAHSSPEQRQAVQEWTCVPPPPQY
>ERV3-1_AMi-I_1p#LTR/ERVL 37..1356[Crocodylidae]
MDLFKRLQKGKGEGSERRMLGWPNTGLWYGVAKALCKLSPSVYWSKEECPVTPTEVQRWVEKELKSEGESGARCTVPWLL
LTVLERLSTQNARLQEQLDQAVHWQMRLNLNEAILHELCSKQLDSASPNCSSSPPELVSQLSKPEAAPAMTGIPLQDARR
ITGQWIDPEEWDGNIWSDEVEHAESLDSGEGQRAFARPVHYDRTTQGPAGVSRSQEIRGYTTAELGTLAEKFRQGPKEGL
KAWILRVLDEGGAHVSVTVAELKALGNLTRDTLYNATMRTAQAPVGTHALLLDWCIECWMDRWPERGDHDDPGPRSWRTM
EEGLGILREEAMQNWMYGGRVGNGPENMPFTSQIKNLLINTAPSHLRTHVSLLLAERQGKTVGDIAAKLLENTPRVEAGG
SQMRAVQKQTDKEQGGNKKLLTRRDLWVWLISHGVPKGRN
>ENS3_env#LTR/ERVL 5782-7239 [Gallus]
KTLFFQLAEQVANVYNLTNCWVCGGPMGLETWPWVSTPIAPKWLASNYSEANPSTHWEDKNMSPWPVQYPAMGMYCLNRT
QPGGIYVGTSNCTWVYRKGTHGIVPQIRDDQWGWYNQSGMRHRFSHFWSSTNNTLFTEAGGKKCIWRPDAGAWKCKWCKD
ESITGNGWNCNVLGHPFGPLNTTYFQAKEHVNELTNKWNGPFENGSVALKGHYWICGHYAYKRLPANWTGVCYVGVIRPM
FFLLPGKDGSELGVRVYDDLNRHRRSIDTSLTRGSGQTWGKDDWPPQRIIKHYGPATWNPNEWISGAREPIYNLNRIIRL
QAILEIITNETAYALDLLADQASQMRAAILQHRIVLDYLLAEEGGVCGKLNDSTCCLKIDDNGKVVKQIAQGIRKIAHVP
VQTWKSPDLDLFSWLPGGPWVKRILFYLLCAVVTLMFVPCMIPCFIQLIQRVVSSMYFVTSSTEGDVKHIRGTFVTKTEK
SFVTIV
>TguERVK4_gag#LTR/ERVK 468-2399 [Estrildidae]
MGAKXSVSQERIYVQTLGILVGGGKRCKKSDVKRFARWLLQSFQDISQANLYQIQFWDRVEKEIAQKEDQSLSIFIHLAI
QLRNIVKNNCEGKPEPPQGERCPPSPPNPPKXLSYPSLPSPGILRQASRQNQPQADSGLSVNPQVPSQDDAGIALHPSPP
QSSSLCTALPHSSKVVSFKTPDPSPRPSPDLSQNDPLPCPRAQDGGDRMACPSPSLRALSPNDPLRPTANPSHSRDFSTH
SSPPPPSGTSPNESFSSPPSDPAPRGEVTPATPPSPGPASALRSRDPPSGSHASVPEGGGGAEEEGGGEGGSRDLPQPPL
AFSAAPVTYTPRQRGRPLAQWAPIPQAVIRDVCKAQKEFGRESEYFRGLLKVTLSSNEYVPADMRALFLCLLTQAEFLVW
ESAWRREVRDALPQLWAKAETSSDTDGGMLTIDHLCGMGEWDVATTQAEKIPRGALAATAKAAEKAFFKLRPSGPVVNCF
SLKQETQESFVSFVDRLYRAAEAQVPEEGLRQGMVKQIALQNANEACRQAMLSLPLDPEPTLQDMLDVCARRVTLPSKDP
QGTPQTPSRRVSFAEAHTPSAAPAPARRFTGPPPKGYHPGRPCNLCNKKGHWASHCPLKEDFLRFKNQQQGQGAFNPGGQ
SKN
>RNIAP1b_pol#LTR/ERVK 2973-5651 [Rattus]
TRPGFFLGAIEGSMPIPWLTEEAIWVPQWHLSSEKLEAATKLVNEQLQLGHLEPSISPWNTPIFVIKKKSGKWRLLHDLR
AINAQMRLFGSIQRGLPLLSALPKQWKIIIIDIKDCFFSIPLCPQDRQRFAFTIPATNHLEPDKRFQWKVLPQGMANSPT
ICQLYVQRALEPIRKQFPSLLLAHYMDDILICDKDLTTLQTSYPILIKTLGRWGLQVAVEKVQIAEIGSFLGSVIYPEKI
VPQKLEIRRDHLHTLNDFQKLLGDINWLRPFLKISSAELKPLFDILEGDSHISSPRALTPAANRALQVVEKALQDAQLQR
IDETKPFDLCVFKTMQLPTAVLWQNGPLLWIHPNASPAKIIDWYPDAVAQLALRGLKAAITHFGKEPKTLIVPYTAIQVQ
TLAATSNAWAVLVTSFAGQIDNHYPKHPLLCFARSQPVVFPRVTSHRPLKEGITVYTDGSKTGVGAYVVNSQVFSRQYFE
TSPQVVECLVVMEVLEKFQMPLNIVSDSSYVVNAVNILETAGVIKTTSKVAEIFQKIQIILINRRFPVYITHIRAHSGLP
GPMSSGNDLADKATKMIAVALASPLEAAKTFHGNFHVTSETLRRRFSITRKEARDIVTQCQQCCQFLPVPHIGVNPRGIQ
PLQIWQMDVTHNSTFGKLQYVHVSIDTCSGILHATPLTGEKTTHVIQHCLEAWSAWGKPRCVKTDNGPAYTSQKFRQFCA
QMQVTHLTGLPYNPQGQGIIERAHRTLKSYLIKQRGGIMIELPPTPRVATALALFTLNFLNLDEAGQTAAERHCSEPKRT
KELVKWKDVLTNEWKGPDPVLIRSRGAVCVFPQDNENPVWVPGRLTRNIKTEDQEDDNSGDPHADPGSANKSAERTTVGN
XVNLPPPDAGDV
>RMER6_gag#LTR/ERVK 321-1622 [Murinae]
MGNSISDPLRXRVGXEGIEMLLEKDIAVLIATVTTRVNPSLLSIAIFIYFLSKNVEKIAVQQEKLAMIIQRLERQETEEV
REQKVLNCEPMVPNEIEDQDRQPIEPTAPPLNETEERQPPPLAFPVTREQMPENGENSQNEQLVWNPVKIQDLKHFKESI
VTYGMHSPYVRQMLNTWATQNRIIPQDWKDLAAAILEAGSQLQWLTWWREEAAVMENRNRSKGVNIVKDQLLGEGQXADL
XXQMQFDDSIIIQCTLVALRAWDKVEEQGKRSMSFTKIMQSPRETFTDFLHRLTSAINRAISDPDVRQVLIETLAFENAN
AECKKVLRPLKAXSAPMDEWIRTTADIDPNDYVIGQAMANNPRYQNVHCFDCGRRGHLKRDCRQGIPRDFSRRPQPSGIC
RRCGKGRHWTNECRSARDMRGNPLPMGNSYEIIL
>RSV_env#LTR/ERVK 4945-6810 [Gallus]
LRKMRRALFLQAFLTGYPGETSKKDSKEKPLATSKKDPEKTPLLPTRVNYILIIGVLVLCEVTGVRADVHLLEQPGNLWI
TWANRTGQTDFCLSTQSATSPFQTCLIGIPSPISEGDFKGYVSDNCTTLGTDRLVSSASITGGPDNSTTLTYRKVSCLLL
KLNVSMWDEPPELQLLGSQSLPNITNITQISGVTGGCVGFTPHSNPSGVYGWDRRQVTHNFLIAPWVNPFFNSASNSTEP
FTVVTADRHNLFMGSEYCGAYGYRFWEIYNCSHRFDNFDIYTCGDVQTVKSPEKQCVGGGGIWVNQSKEINETEPFSFTA
NCTASNLGNVSGCCGKTITILPSGAWIDSTQGSFTKPKALPPAIFLICGDRAWQGIPSRPVGGPCYLGKLTMLAPNHTDI
LKVLANSSRTGIRRKRSTSHLDDTCSDEVQLWGPTARIFASILAPGVAAAQALREIERLACWSVKQANLTTSLLGDLLDD
VTSIRHAVLQNRAAIDFLLLAHGHGCEDVAGMCCFNLSDHSESIQKKFQLMKEHVNKIGVDSDPIGSWLRGLFGGIGEWA
VHLLKGLLLGLVVILLLVVCLPCLLQIVSSSIRKMINNSISYHTEYQKLQKACRQPENGAV
>TguERVK1_pro#LTR/ERVK 2108-2755 [Estrildidae]
MQVPAPGKREREGACGPHPASSRCEYEAAHPCQPPVGRGALVPHTPTGSSQLHTPASDTIAESRNTARGTFVPTATASSA
CAAGSAGGAPERDPWVALALKIGKEPPKVWGTCRLYGSRDPHVIGLQFWADTGADCSILPQALWPRHWQCKEVPPVNGVG
GLSRAWKSTQLVAITLHTKKGPERTVAIHPYILQNSPPLIGRDILAMLGVRITNL
>SRV-2_pol#LTR/ERVK gi|1709715|sp|P51517|POL_SRV2 Pol polyprotein. Contains: Reverse transcriptase/ribonuclease H (RT); Integrase (IN). [Simian retrovirus 2]
QKRIWKFLATAVDILAPQRYADPITWKSDEPVWVDQWPLTQEKLAAAQQLVQEQLQAGHIIESNSPWNTPIFVIKKKSGK
WRLLQDLRAVNATMVLMGALQPGLPSPVAIPQGYFKIVIDLKDCFFTIPLQPVDQKRFAFSLPSTNFKQPMKRYQWKVLP
QGMANSPTLCQKYVAAAIEPVRKSWAQMYIIHYMDDILIAGKLGEQVLQCFAQLKQALTTTGLQIAPEKVQLQDPYTYLG
FQINGPKITNQKAVIRRDKLQTLNDFQKLLGDINWLRPYLHLTTGDLKPLFDILKGDSNPNSPRSLSEAALASLQKVETA
IAEQFVTQIDYTQPLTFLIFNTTLTPTGLFWQNNPVMWVHLPASPKKVLLPYYDAIADLIILGRDNSKKYFGLEPSTIIQ
PYSKSQIHWLMQNTETWPIACASYAGNIDNHYPPNKLIQFCKLHAVVFPRIISKTPLDNALLVFTDGSSTGIAAYTFEKT
TVRFKTSHTSAQLVELQALIAVLSAFPHRALNVYTDSAYLAHSIPLLETVSHIKHISDTAKFFLQCQQLIYNRSIPFYLG
HIRAHSGLPGPLSQGNHITDLATKVVATTLTTNLTEAQTAHALHHLNAQSLRLMFKITREQARQIVKQCPTCVTYLPIPH
FGVNPKGLVPNMLWQMDVTHYSEFGKLKYVHVSIDTFSGFLVATLQTGEATKHVIAHLLHCFSIIGQPIHIKTDNGPGYT
SSNFRAFCSKLHIKHTFGIPYNPQGQGIVERAHLSLKNTLEKIKKGEWYPTQGSPRNILNHALFILNFLNLDAQNKSAAD
RFWHTSSKKEYAMVKWKDPLDNTWHGPDPVLIWGRGSVCVYSQTHDAARWLPERLVRQVSNVTQSRE
>SFV1-12_Crp_gag#LTR/ERV4 39-1868[Crocodylidae]
MLVCVCPWRLGHRLPPQTSDDLWNHLAYHAAGNSDPETHISGRIWVNGPESKIWTCSLAAAALGCVMAAPKVMFSPVNAG
GNGALAGVLPSKGDASPASDEQASILGLLHNAIGRHPSGQINPQQIPETGKAYDSLVRCRRELEAERGTKKRPFSKAELT
PGKAVEVLLRHFINAVGAIGNLESQLHTACRNAAELAAAKASGILTNPEESPEYLKEAEPHPCRLPTAPEYTPTECEEKE
PPPYSEPNPPAIVTATEPNPPAVVTAPPSAIYPSLPPATPPPNVLPVTTRKVTTEEQEGEGENDEKTIEKFEKTVVVFRT
RNRSELRELYVDTSIRSGETPVTWLGRLVLEHGAETLDKAEAHYLMRQSTWSGGTCVDTTLIDDQDELPLLSPASLAAGG
ISRCAYRAHEGDASNLRRPRALQLVYAMVGCSFLRWNPKKNPIDGVKLEKEDDNWPHKHLLDPGKVPITLGGVEEAYQVY
GTVFGQAARLVMLASVGKPCSTVLSLQRQFGSPSDRESDRQTFPVEVPPTNANSQVLMTQKQWTPPDXQQPLQAQGPPTR
TPLERARFGFLLGRSGLDKATLRKLSEEEQLTLAIKLGWDPNRQPKPKNE
>SFV1-11_Crp_gag#LTR/ERV4 21-2203 via tfasty with SFV1-8_Gav_gag, 1 frameshift and 1 stopcodon. SFV1-4_Crp_gag near-identical.[Crocodylidae]
MGGVLESEIIRSCPWSSRVRQTIGAEDLWDHIAFHQAAPAEGTVSGYLSLRGESGEEWAVRLTPSALGCIIQDPRAVYRP
RGETGTVALARKKSLGTATSGPDREFARCIKYVKEGGEDTPPDGFNCPTLTIGSRGHELLVQLQECLEKDGRKIKWSGPR
WKKGRIINVLFREYVALLRELTDTRAQLMAATRAVTEKLAERPLQDGADQTVSAPKPVLTSRRPAPPIPSPPSGKTPSMV
PPTENRPPATAPPAVRKSPPPYVSQRHQEDVRENCTQTNNENSNKVTSKSVGTETTEATNENITNNVTIGKPRVRTNATG
TDTNDVTTRRSTMKTSTIGTNTSNGLIEMTKPVTKKNYTNETINADENENEFIRITxNKPIQQDNDYTEELTSAFPIAVQ
KWVTDPQGQTRQTITTRTRTRSEMNELRKETGIRSDEMPIAWLGRLVAEAGSETINQDEALQLVRNSAWSRAKVVDPVPV
LANYFWPIPIPALVTEALQRKIHTWHEGHAGRASATSLVYTVIGASYAMWNPAHQALNLTPAQVQGAWPHRYVLSSGDVP
CLQEAVDAATEIYGGNQSITARLLLSTSVNGPVIHTLGQLDQLRGAMEKQRPQKTVSFVKDEEQESRHVYIVENNVNPRH
RQRDQRKPPRVSSQATRKYSTRSSPPPQQRARASYSPPQRTPLERAMFGFLMEKSGLSKEQLRALKDEGQRALAKTLGFV
ERSKPKNE
>SFV1-14_Crp_env#LTR/ERV4 5517-7096 via tfasty with SFV1-19_Gav_env, 1 frameshift and 1 stopcodon.[Crocodylidae]
MIGTIRLLYCISCIYVTVASIQSLDVSSNSVLRLISLWANVTGDDEGGEGLTACLKVPMSTEDQILIPYVMPHNVTEWFY
RVAGRKVSSINITQNPLKNKDWVINYAWRKNLTIFDLYNSREKRCERTPIEGQSTPLKTEKIPCSKIPWGINPNEEKGPH
GDDSLNWDPRSVNPAWIVSLPPHPGPGRVAPVIRVPLKTPKPITKWKVSSAEKYLMFYYPVLRASVLSAACHGITSYVRC
ELPRSAFxIRDSCSELYTPAPLGLAWACNDGRLRLRLPAILSGVQCFLGTVLFCPPLSADTAHPPSPAVLHRSARSSGPV
WSSLTRGERIAQGASWAFEGLFLWGLGIAKAWIALAELAEQVELLANETATGFELIDQQLQATSRMMMQNKLALDTLLIQ
QGGLCQYLNLSHEMCCIAIPNISIPLQQQIVKIRKIAEDVNAVSGIGKGWLSQIFKWLGWDASSWVMNLLTPLLSFLVII
IVITTLVCCVFKCVRKQMSDLSVFVYTRIPTHISLKEEAENEGEYEL
>SFV1-21_Gav_env#LTR/ERV4 6543-8342[Crocodylidae]
MSLDIMATRLRDIALSLVLCIFCKYVTNSSADPTTELRHSSNTVLQLLSLWANATGEDKPGQGLTACLRIPISVGDPVLT
PFLVPXNVTKWFLEVSANEKTSINISMPLKDGGYTITEYSWPRNFTLKDLSDTAKKCFRRKTPLTCSAIPWGVSPQGGEW
SRPDASLRWDPQSINPPWHINLSPRGKRVAPIVILSSLTEATPLAEWDEESVINLTNSGPXGGNSWYGFYYPVLRAILLN
AACHGIELPVTQKGPPERVRHAFPYPDICSQLDDLTDPSPLGSNPXLTSHFPTLRVVLENTVCNNTKIPPGQHXAQGSIH
TNFPPSRCDELTTPAPLGLAWACSDGRLYTTLPATLTNVQCFLSSVLFCPPLKASTAHPPSPIIAHRQTRSSTPVWSSLT
RGEKIAQGLGWAFEGLFLWGLAIAKARIALAKLAEQVELLANHTALGFELIDEQLQATSQMTIQNRLALDALLIKQGGLC
QFLNLSRDMCCVAIPNVSIPLQTQVVEIRKIAEDVNAISGIGQGWLSQIFKMLGWNVSSWLTNLLTPLLSFLLVLLLIVF
LVSCVFKVITRKVSNLSVYVYSTVPTYENFINTDEAEDDC
>SFV1-14_Gav_env#LTR/ERV4 5621-7229 via tfasty with SFV1-11_Crp_env, 4 frameshifts. [Crocodylidae]
MATAPKDSKVTLILWCIYCVYITRLSANPVAEPEYSSNSVLNLLSLWANATGDGETGDGLTACLKVPISVEDPVLTPYPV
PFDVSEWFSKVSKSQKTSINISIPLGSGGCSSIDYSWSRNFTLTDLSSYSPCKGVLQGETRTACSAIPWGMHPQGIEWSR
PDASLKWDPHSISPPWYIDLKPHGKRVTPIVTLSPLIEAIPLVKWNEALAINLTKLGPHGNNSWYGFYPILRAILLSATC
HSVRSPVKQRGPPERARHAFPFPGPCFDELTTPAPFGLAWACLDGRLYTTLPATLSNVQCFLSSILFCPPLQASTAHPLS
PVVTHRHTRSTTPVWSSLTRGEKMAQGLSWAFEGLFLWGLAIGKARIALAKLAEQVELLANHTATGFELIDQQLQATSRM
TIQNRLALDALLIQQGGLCQYLNLSRDMCCMAIPNVSIPLQNQVIKIRKIAEDVNAGVGQGWLSRVFKWFGWNASLWLLN
LLTPLFSFLFVFLIIVTMVSCVFKILKCKVSNLSVYVYSTVPTYENFQNENEMEDEV
>SFV1-10_Crp_pol#LTR/ERV4 1889-5095 via tfasty with SFV1-1_Crp_pol, 2 frameshifts and 1 stopcodon. [Crocodylidae]
LVWADADTADPSARRCSNISDPPQPQDIRNLEKPSYQVLNNTTSDSRPYAVVPVVHPITGQQLPIRFLLDTGAEITVIDP
ATPPNTPTRRTIHVAGVNATSTVPLAKVRLGNPIITIVAALGHLNLLGVSELRALHMKDLVCSALPVTGAVPRLPPPFTP
RLKDPTAPPWRFTPIRTKPHLIPSLLTLLDNLTAEGKIEPVQYSHYVSPGWGIPKPKNPSEARLVVDYRQANKRSDLVQL
VPVVTLPDLQAELLQVMAQSSWTATTIDLSNMFFSLPLLDPEGVLCMGIQGRIFRWRVCPQGYCNSPALATAAMNQSLQR
FPNSDCNVKLFNYVDDILVVGTPSELVKRVTADLVDHLREEGWDINIAKSQLEPSSSCVFLGTQYTPQGRVASPAAVPTP
PWDTASDTGPTPKQAQQFLGSINWLRHHVAPEHLGTLATLQRRLRKRTTNHQPWTRRDNRRVHDLIQAATSTPLVPFSPT
TPLRVTVGWTPTHLWATAHTSKGPATFLNRTLHKEQHRYGHLGKLLLCLCLASEHHLHHSVHDLYGPGATLLTHLDPTRM
PGDFHGAPSTWHTLVTHAQYDWAAWACHDSATVTPTILSRPILYGTSLPGNVASDGTSQFGGGFAWKCSLCAASHIEWAN
PDWRDTPDAPLTHQAQELELRGAIGALKHIAIAHDQPFTTVVLVLDSRWVCDVLTGVAEPERFRSQWDDIFEVLHHMSYL
PMIRHTNSHVPNTDPLHQTVDDWLALGPKTTSHDCIDDVIHPAAAVHRSLKPVCDPYLKWLHDLWGHPGSDTTMRRYHNV
GGWQYTTRNGLPTPRDWRRVLQACHQCAQIKPFRKKCFQGAYNAEQHQPGAFWQVDLMGPLPNARQHPKALVVVDLGSRM
VGAIPMTRTDGPRCAQALLHQFSQWQTPREIQSDGGPPFNSHHIRNFLTTHNIRHHIHLPYHPQSNGVVERAIGELKRKL
LLELKQTDFKGWSKVLSQTLLNLNSGKNLWAVGPLQAREGWDPDFKPGDPVWVAFPTSTPTKYPPTFPGVVVEPTALAHT
YKLRLINSADDREHLVHFNWLKPRSVLLS
>SFV1-6_Crp_gag#LTR/ERV4 0-1865 via tfasty with SFV1-23_Gav_gag, 3 stopcodons. (starts at last pos of LTR)[Crocodylidae]
MASRTGFVGGEFESELIQSCPWHSGVRPAGDPDDLWAHIVYHQAADPAVKMIDGYLSLRGTSGKEWAVRLSPGALSCVMR
DPRAVYRPREETGPVSPVCVKPLGVTSSSPMQEFARCMRYLKEGGEDTPPDGFSCPSLTAGSRGHELLTQLHESLERDGR
KEKWMGLKWEKGQMINILFREYLVVLKELSENLAELPLQDGASRSESAPTPALTSLPAKIPPPSFTSPAVPPTWDPLPPS
FVTTPGSPPxRHWPPATAPPPEPASPPPYMDRRQLEDVREYCNHTSCQRATKSVGTETTEETNNCQNTNMIETNRSNELE
CVTAYPIAVQKFVTRPQGQMQTTITTRSRNQLEMSELRKDTQIHDHETPITWLGHLVAEAGSETVNQEEALQLVRNSGWS
RAKVVDPVPVLANQYWPIPIPALAVEALQRKVHTWHEGSADRASAASLVYAVIGASYAHWNPTYQPLNLTPAQVQGAWPH
QYATTPGDVPCLAEAIDAATEIYGGDQGITAKLLLNTSINGPVIHTLGRLDQLQGAIKKAKVNLASSEKYETIKAYPVEN
xSSKPLRNSPPQRTPTERAIFSFLVNKSGLTKEKLRRLGDDGQxALAETLGFQEYSPKSKNE
>SFV1-2_Gav_gag#LTR/ERV4 0-1955  (ORF starts on last base of LTR)[Crocodylidae]
MASRTGWSAADHDRDDQSRCQACPWASGHRTTGSSDELWGHLQFHQAPSHADNDGTQPFCVWHQSEPRRPWEVRLTGRAL
GCVLRDSNVLFAVPSNQDAPDACVTAAKELPPGDQQDTDPSPSRDWDALTKKITALTGEKRCTEGVNPPQFIIPGGASHR
RLRGVFTALGTINDKKKGKKAECLRACLEGFVATLGRLNDYEMALITISRAAGKADPPSGGSHEPNVSGPLPAISAAPPT
APPPPPYPEGKAPPSVVTSLYPPLPDPGGGGTQAAPPTDAAPPAPGPLPNPPLQAQPVEIIKTRQDGDGNLITERTTRDR
DRSEMNELINRTARQEDETPAQWLGRLVLECGHETLSRREAISLVTHGSFSLGLLPGSTVLEADNTPWPISLSALVAGAV
HEKPHQVHEGAQPIHAPHSQPFVNALAGAVYLSIPKRRIATPRTSLTTPAHSSGSTESPDELADSATTPTRSGGPSFPRR
LLNTFTGISDDGGPEIPRPLQTPVVHHDPWPQRHCKDPLQLEIPPAILQATIDIYTDNPEIAELQTSSLHNQPLSSLYCF
QHWRRQQQQRGKPEPACVIEVAPVATSAHRREQCQAPNSAQGTSHCYPERTPEERARFGFLLNHAGMKKEVLRNLDDDTQ
KQLAIQLGFQFP
>SFV1-9_AMi_gag#LTR/ERV4 12-1797 via tfasty with SFV1-1_AMi_gag, 1 frameshift. [Crocodylidae]
MGSLRREGKTHADPLVKYCPWANHQRPPPTDADGLWAHIAYHQVAQNGKLGGYLSIQPTDTLTHQPGAAKEWVVSGLSPA
ALGCLLSCPSVLYRPPDVVAEVELSRIKPMGGGIDRAPEKEFARCIQHLKTGGGCDTPPDKFRCPAIIPGGAENEILTTL
RENLEEEGKNSSKWGGQKWDKGKMLNVLFRSFSTLMRHAANQANLIQTLTKMAADHAATAPKDGAEAAAQGRGEEEAETV
SNKDPPPSPREAFPVASAPPLEAETPPPYPDALCPKKYPLGDHENLGIDMAAPPVHANPIAIAKAVVDQAGNTRTTTTYR
TRSRGELQDLAKDTKIQPGETIAIWLGRLVLEHGSETVDYEECAALMRQPAWSGGACVDTDKLFRNQRWPIPLPAATIPA
LMVRAHAWHADPPLAPAPTQLLYATAGTSYLTWDATRRPLNLTHQESHSDWPHRYCRDPANVPVSTPSVESCVELYGGPN
APMFRLLLSPLIGEPLGNVLSSLGKLTSAQRGQHAQKVAAATTQWSNTPDKPRKPRDPGPPERSPEERAMFGFLLNKSGL
TKAQIRHLGDAAQRALAERLGFTFRSGDAQEEKNE
>SFV1-10_Crp_gag#LTR/ERV4 0-1889 (ORF starts on last base of LTR!)[Crocodylidae]
MASRTGWSAADHDRDDQSRCQACPWASGCRQLVDADELWRHLQFHQAPGHTDNDGTQVFCVWLGEDPRRPWEARLTGRAL
GCILRDPAVTFSIPSAQGEQVAVASEFPPPEWDATPSQEWDGCVEAIAALAGDKGCLQGIAPPSPSTIPGGVSHRRLHAL
AEDLGVLKEGKRKGKKVACLRACLETLVSTLNRLNDYEVAVVTMSRASKDGALQQRPSGGDKLEPPPPTPPTVPPPYLGD
EAPPPPVTPLYPPLLEGRGKTRPPPPAPPPSAPNFVPTPPLQVHPIEIVKTRQGNDGNIITERTTRDRDRGEMNELISRT
ARQSDETPTQWLGRLVLECGHETLSHREAVVLTTHGSYSLGLLPGSNVLEIARTPWPISLPALVAGAIHEKPHQAHEGAQ
PTHAPHSQPFTNALAGAVYFSIPKRRPTIDAGVSVFTRSGNKGDSDDGDDDDRDEHHSDDDIPTSSRPPDSTLTGPGVSP
NRPTQQPRHSYDPWPQRHCKDPLQLQISPAILQAVIDIYADNPELAELQASSLHHQPLAALYRFQYRRRQRQHEHAAPAH
PAQALPAKITNFVREAPRRYPERTPEERARFGFLLNHAGMKKEILRNLDEETQRQLAVKLGFQFTPKPKN
>SFV1-10_Crp_env#LTR/ERV4 5135-6991[Crocodylidae]
MSAHRQDEEADTEPLIRPSIALPPRDPRALPLSFVGLWVRLVGRPRGSGATAPTSGPSVPPRRRRKLWLLFLIYFLLLTN
IIVMHSFTKRAKRSLDLSPLPIADNLFLRTSQEWMLLTGHTSGSVCAHAPTSAADSPFSIAVIPVNYTELFLSFTRNSPG
NETIHYLACKTTCSVKTLTYAWKWNGTHPINCTVQDVPQGCFNLTHGPPWGAPHSIVPDPNNVTLSIPSLPQAVLRTVKV
KLSTLDTQCFWPGCHTIPCTFKTSTSRRAFEDATAFRLFSTKVFMTIGSNFGLSAHRKAFKTFTNHFSPDLKSLLALYNT
KHPPLVGLIPAPHDTMFYCQRDENSTQAILYSHFPYHSNVCCILVQVTLCPYQFSNVTHWTAPLTLPNNARKRRNVVSTD
QITGVMGESKFWSNMTHTERRKFATGWTLYGMFATGASASALAIQQLQTLELLARLANGTADALEVFNRQLQDTSKMAFQ
NRLVLDFMLAKEGGFCATLNLTAPHETCCLVIYNASEPLSKAINQIRKVAEDTRTIVQTPFNWLTSTFESLFNLRLSPWL
VNLLTPLFTVLIVVLVGSCCIGLVVHCIRRQVTSVMLITRHKYLPQTNANSQEMRRSAL
>SFV1-22_Gav_gag#LTR/ERV4 36-1721 via tfasty with SFV1-2_Crp_gag, 1 stopcodon. (probably a frameshift at very end as well)[Crocodylidae]
MKQRELIRCCPWTRGVRSLSNPDDLWAHITYHQAAGSLASDEITGYLSLTTGGKEWSMSLNPAAFGCVMSHPTVTFxARE
ACGTLSLARAKPVGVANPTPVQEFARCIRYAKEGGESTPPDKFNGPNLREGSRGHELLTQCRESLESDGRTATKWSGPKW
DKGKMINVLFRTVSILLRENADLETQLETAVRQHLDAAGQLPPEGWGKEEGERENSETKPQTPPVEEQPPPSAPPPPYVS
SPADKAEGLYPPLPKQSPDPVEALPVIVTKTVIDGQGQPRTTTTWRTRTRTEMQELMKETNIKPQEPVIAWLGRVIHEAG
FEKVDVQECNILIRNGSWSRGQVTDPTHLMANPTWPIPLPAAITQALDNKSHIWHTGWKPGSYDPELLINAITGISYCTW
NATLFPRGGITPAQQIGPWPHRYVDDPGSLPITPTAIEAAIEVYGGSHKLSLQLLLTGSIGSPLTSLLSLIHQLHSIQQT
DTQRPQALPVCPTPVPVPASRSTPLCQDDRKERTPRERAMFGFLLNNSNLTKQQIRKLGDEGQYHLAERLGFKWTSDDQQ
KK
>ERVB2_1A_MM_pol#LTR/ERVK 2540-5155  [Mus musculus]
FKLAEFFIGVTDEQLYADKIEWKNSEPVWINQWPLTREKIQAIEELVKQQLEKGHIEESNSPWNSPVFVVKKKSGKWRLL
QDLRAVNSTMHDMGALQPGLPSPVAIPKRYYIIVIDLQDCFFTIKLHPEDSKRFAFSIPSVNLQRPYRRFQWKVLPQGMK
NSPTLCQKFVDKALLEVRELFPQAYILHFMDDILIAMESKEQTEQILKITIKCLTRYGLIVAPEKIQHNRPLSYLGHLIY
KDCISSQKVTLRLDKLKTLNDYQKLLGDINWVRPYLKLTTGDLSPLFNILKGDTRPNSPRVLTPEALQAIALVEERLTEA
KVQQLDYTKEWEFLILKTAYTPTGCLWQEGVLEWIYLPHTQTRMVSSYLFMCSMLIIKARTRSKELFGKEMQNIIVPFNR
QQFEQLLQNDEDWGIALQGYTGQIKYHLPRHPLIEFAKNAEFVFPSKVSKEPLQEALLLFTDGSSNGRAVVYRENHPPII
KRVIEFSAQQAEITAVILALENFPQAFNLYTDSKYVTGLFPAIETALLSGDSKILKQLQQLQSLIQKRKEKFFIGHIRGH
TGLPGPLSLGNSLADKYTKEIIMSAIERAQHSHQLHHQNALALKRMFQITREQARQIVKQCQHCPEVHHPPKMGVNPRGL
KAQILWQMDVTHIPEFGKLCFVHVTVDTFSHAVMATARTGEAVKDVIQHLLACFSYLGVPRKIKTDNGPAYISKAFAKFL
NQWNVEHVTGIPYNPQGQAIIERTHQVLKNQLDRVRAANQFYSPHHALNHALFVINHLNTNEQGETPMMRHWGPVALKAQ
PLVMWKDLLNGVWRGPDTLITSGRGYACVFPQDAESPIWIPDRLIRPAPPLPRTKTREEEKKEAEGASTCS
>ERV17_MD_pol#LTR/ERVK 2390-5080  [Monodelphis]
HGFFIGAVEELRAVPLTWKNDKPIWVDQWPLTASKLSALKEIVQEQLTKGHIRPSTSPWNSPVFVIQKKSGKWRMLTDLR
RVNESMEEMGALQPGLPVLSWIPINWKIWAIDLKDCFYTIPLQEKDCKRFAFSVPSINLQEPMDRYEWVILPQGMKNSPT
MCQQYVDRALRSIRSKYPKVMMIHYMDDILLAATTVEQLEALFPVLRQHLSEFNLVIAEEKIQKGEEISYLGSLIGPREI
KPQKIQIRMDKLQTLNDFQKMLGDINWIRPFLKLTTEQLRPLFQLLEGDANLKSPRTLTPEAISALKNVEEALNTALLTR
FDPQQPVEVKILRTPHVPTAAVVQRDKVILWIHSKSQSGKAIPLYPLLMGQIIKRAIKVVLQGIGQYPEVIHIPVTKAQL
QDWIESYTEWASLLQFPCFFRPQTNLSPFWKIFNQYCIVSNPISNHPVDGPNIFVDANPQAAAIFSPPNQPMIFRTPFSS
TQQNELAAALLALWKHPESFNLIVDSQYVAQALPKLTNAVIQSKRGTVNLIFSKLQHVLRDRLRSVYVLHVRSHTSLPGP
IILGNHIVDQALEAPLLSFSSPAAEARKAHDKFHQSARALQKQFQITKAQARLIVKACPKCVPFQPASNKEGAQNPRGVH
PLHIWQMDVTHVNSFGLAKYVHVTIDTYSGFLWASALRSESARAVKTHCLLTFQTQGPPEILKTDNGPAYTSEAFATFCR
DWHITHITGIPYNPTGQAMIERANRTLKMVLVKQKGGAWRSPQDRLATAIFTINNLIWTQQITKAEKFFEHWHRMVPAQR
EDTLVPAGDSDYVMWKDENNTWYGPDRVLIRGKGFLCVSTGQGQRWIPRRWTRPILQSGENETSTSTKGQEKAPGATEKR
ETTDPVPGDSDEHSQHG
>ERVB2_2_RN_gag#LTR/ERVK 178-1815 [Rattus norvegicus]
MGGTGSKGQKMFVSVLQRLLAERGLKVKESTAVEFYQFLMKVSPWFPEEGGLNLEDWKKVGREMRRYTVKHGEETIPKQA
YPIWLQMREILTEQSDLVLLSAEAQSEKDVEEPVYDLPYDDVTEVKVKEVKEKTYGTNKPLVKKDPPKMNLLGLDDDDDL
SPGDWDDLEEEAARYHHDDDLVFTVKKGSKGSKARPIPASHRKLLPPVGFAGAMAQAREQGDTSFVFPVVYTGDRDDEDS
PTWEPLPLKTLKELQAAVRTMGPSAPYTIQIVDMVASQWLTPHDWHQTAKATLSPGDYILWKTEYEDRSKETVQKSSGKR
GPKVTLEMMLGTGAFVAPASQVKIPKFILKEVTTNAVLAWRAIPPPGSKKTVLAGIKQGNEESYETFVSRLEEAIHRMMP
PGEGAEMLLKQLAWENANSLCQDLIRSVRKTGSIQDYVKACIDASPAVVQGMAYAATMRGQKYSAFVKQTYGGNNARGNS
GPTCYSCGEVGHLRKDCKRGQGESKRPLPGLCPRCKKGRHWKSECRSKYDKDGNLITDKKEEETKN
>ERVB4_2_MM_pol#LTR/ERVK 3068-5671  (ERVB4_3_MM very close with many errors) [Mus musculus]
KRFRGRPFFLETTVPPAFQADKISWKSNDPVWIDQWSMPQEKVQAALQLVQEQLRLSHLEPSTSPWNTPIFVIKKKSGAW
RLLQDLRAVNKTMMPMGALQPGLPSPIAIPRGYSKIVIDIKDCFFSIPLHPQDCVRFAFSIPTVNHVGPNPHFQWRVLPQ
GMANSPTLCQKYVAQIINPLRQEFPDAYIVHYMDDLLVATKELSSTHVVAQALVRALQRWGFVIAPDKVQVQYPFMFLGF
QLEPIRVHSQKLTIRTSQLRTLNDFQKLLGDINWLRPYLKLTTGDLKPLFDTLQGDSDPNSPRKLSPAALGALHKVESAI
DQQTMGYYNPLQPLSLIVFSTPFSTTGLLWQDDNPLFWIHLPATPTKVLPVYPSLICQIIILGIKMATRNFGKAPDTVIL
PYPSEQLSWLQSQFDEWTILLSSFQRNFDTHLPANRLVQFLQTTPFVFPKVTQLQPISKALTVFIDGSSNGRAAIIVEGQ
RHIIETTHTSAQLVELRGALQVFESVSSPFNLYSDSHYVVRALRALEVVPSIQPTTATFQMFLKIQMLIRSRAYPFFVGH
IRAHTGLPGPLSQGNDLADQATRLTCLTIDPDPLSQAQRAHTLHHLNAQTLRLRFNITREQARQIVKQCKNCLTLLPEPH
LGVNPRGLVPGELWQMDVTHIPSFGKLKFVHVSIDTFSGFLCASAHTGEATKDVINHSLYAFSVMGQPKIIKTDNGPGYS
SLKFKQFCAQLQIKHITGIPYNPQGQGIVERAHQTLKNALTKLGAQETIYTLKGNSKQLLSHALFVLNFLTLDISGRSAA
DRLWHPKTSLEYAQALWKDPLTGIWNGPDPIIIWAKGSACIYNSKEGGARWLPERLIKPFNTTQGGA
>ERVB4_2_MM_env#LTR/ERVK 5656-7754 via tfasty with RNERVK3_env, 1 frameshift and 2 stopcodons. (ERVB4_3_MM very close with many errors) [Mus musculus]
PGWRLRRCFMFFSRRTTMYRSLTTLMMLVMTATARQAQTYQVFNYTxIIQNQAGDIVNSSSKIGTKPHWPELEVDICVLA
LGADAAWGTPDYYMPQLTAVNTGDKKTDPGCSSDIRHTALALHTGGIYVCPGTHRDRSLNYKCGYENEFYCASWGCETTG
DTYWTPSSSWDYITVKRLYPNSxVTSPRKQPLNSYCSPISSRQGWCNPLQISFTTAARTADWTKRGFSWGLRIYKEGTNW
GLTFKIKLQKEIPNKHKASIGPNPQLHHPNSPNNPRLPGTRPTVPAPGRTTTLFQPTIPAGPHSSTDLLWSILNASALAL
LDKTQRDNASEFEDCWMCFSATPPFYEGIALFGNFTLLSDARQLPFESVQLTLTKLSGIGSCVLGPDMLPPRPLLEICNN
MLRVYKNRYSYLLAPNDTFLACSTGLTRYIIIQDFINNRDYCVLVQLFPNFSIHKTGDLLTSWDQGASLLSHHKREPISA
VSLAVLLGLGAAATGTGIAALVSSQQNARNYHLLNEAISQDIENIKKGLDDLTDSLVSLSEVALQNKRGLDLLFLQQGGL
CAALKEECCVYVDKTGLVKDSIAKVTASLEKRKREREQQEPWYQNLFSTSPWLSTLLFSLLGPLLGLLLLISFGPWAFQK
LTRFVKSQIDSSLSSAFVSVHYHRLDVGDNKQVTGEETDVDTASSPSSREERLNFHKMLK
>ERV1_MD_pol#LTR/ERVK 1781-5218  [Monodelphis domestica]
MRYSFRFPIIATESIVLKENSEPTWIPASFRFPVPQGAKGLILGDPDLIAKGLEIFPTLFQDKETNGLHILAAAKPAFCI
SKDNNLAYLTIFPEADFSLKSKLQKSSLDSTAHGLFWSQKVTQDRMVMSLFVEDRVISGILDSGADISVISATDWPESWE
VIEPHQKLIGIGTPEHILQSANTLSWSDSEGHRGIFKPYVLDIAQSLWGREVMSAMNITLTTSDKLHTEFVGAASVAPLF
ADPITWLSSKPIWINQWPISKEKLVHLEAIIQEQLRLGHIRESNSPWNTPIFLVPKKAGKWRLVHDLRKINEQLMDMGTR
QPGLPSPGPIPINWKLIVIDLKDCFFNIRLSPQDCHRFAFSVPSINYGTPFKRFEWLCLPQGMRVSSCLCQKYVAHALEK
VRLEHAKYHIIQYVDDILLAAPSSGEVEILLADATKALTAANLVISKEKIQTTPPYKYLGTLVYDQEIRPQKIEIRRDSL
NTLNDFQKLLGDINWLRPFLKISTGQLEHLYATLKGDAALSSPRTLSPKAEEELKVVEEAVSKARVYRIDPSLPLIASVL
QTRYTPTGALHQDQHIIEWIHLANQQTKSLTSYLELIILLITQIRKRARQLTGIDPSTIHVPITREQVQNLFAQSLPWQI
AFADYTGQIDNHIPANKILQFVKLTPIIFPRMTSMHPLVDAVNVFTDASKHGRAGAVVQDSTMLLDTTYGSPQKAELAAV
RSVLRDVVQACNIICDSLYVVNLVNSLETAKIKPVPDEELYLLFRTTQMVIWQRQNKFFITHIRSHTNLPGPLSEGNAKV
DTLVASAFQDAVRSHSLLHQNAKSLKCQFDITKRQAQEIIQQCSSCAQFSSTPLPPGANPRGLKANQLWQMDVTQYAPFG
RWKYVHVTIDTYSRVIWATAQTGEKVSHVIAHLLEAFAHLGIPSQIKTDNGTAYTSKRFAEFCKLWNINHKTGIPGNSTG
QAIVERANRTLKNQIQKQKGEYLTIYEGDISKPKPIIPNKLLRIVLLTLNHFSIPEGLNATPMQTHFECHDTMDTVQQPW
VFWRLPGDKDYRGPNRLITMGRGYACVSTDNGEIWTPSKHLKPWKGPLPDARGAEEQAHQSSTAPAARDQDEKQTSIAAV
SSQLPDGQAQGTGIEGNTGECTHSEH
>ChIAP34_pol#LTR/ERVK gi|94173|pir||D40899 pol polyprotein - Chinese hamster intracisternal A-particle CHIAP34 [Cricetulus griseus]
KRTGFYLGAIEASRPIPWNTEDPVWVSQWPLSSEKLEVVTRLIQEQEQLGHLESSTSPWNSPIFIIKKKSGKWRLLHDLR
AINNQMRPLGPVQRGLPLLSALPQNWKLIIIDIKDCFFSIPLFPRDRQRFAFTVPSLNHMEPDKRYQWRVLPQGMANSPT
ICQLYVQKALEPVRKQFTSMIMIHYMDDILICHRKIEVLQQAFPMLVAELKQWGLEIASEKVQVSDTGLFLGSVITPTKI
IPQKIEIRKDHLRTLNDFQKLLGDINWLRPFLKIPSADLKPLFDILEGEPHISSPRSFTPAACQALQKVEKALQDAQLHR
IDETLPFSLCVFKTAKLPTAILWQHGPLLWIHPNASPAKIIDWYPDAVVQLALRGIKAAVAHFGRDPHLLVVPYTTAQIQ
TLTATSNDWAVLVTSFSGKIDNHFPKHPILQFTQNQAIVFPQMTAKHPIPNGTVVYTDGSKTGVGAYVIGNKVVSKQFNE
TSPQIVECQVVLEVLEAFPGPLNIVSDSSYVVNAVNLLETAGIIRPSSRVAGIFQKIQITLSNRRFPVFVTHVRAHSGLP
GPMSSGNDLADRATKLMAAALSTQIQAAQEFHQRFHVTAETLRRQFALTKQEARQIVTQCKNCCEFLPAPHVGINPHGIR
PLQMWQMDVTHVASFGKLQYVHVSVDTCSGIICATPLTGEKAAHVIQHCLEAWGAWGKPHILKTDNGPAYTSQKFQHFCR
QMEITHLTGLPYNPQGQGIVECAHRIAHLSLI
>SFV1-24_Gav_gag#LTR/ERV4 30-2041 via tfasty with SFV1-14_Gav_gag, 2 frameshifts and 1 stopcodon. [Crocodylidae]
MESELIESCPWRSGVRPNTNPEDLWNHVVFHQAANQASATIHGYLSLDGISGKERAVRLSPGALGCMLRDSRAVYRPREE
NGTASRARTKSPAAASFSPAQEFARCIKYVKEGGKETPPDRFKCLSLTARSRGHELLTQLREALERDGKRTRWTGLKKWK
KGRVINVLFKEYSLLGEFIDPGKQLKAAVGAAAKNLAERPLQDGADRAESAPTPEPMSPPAPPTKSRPPTETSPIAPPTR
SPPPATAPPAVATSPPPYIGQRHPEDVQENCNQTSVQQSATSNRKRGNGVRTKETNVTADAIVGPRSNRSETVSTNTNTN
ETSAPATENEKLVTAYPIAVQKLVTDPQGGMRITVTTRSRTRSEMSELKKDTSIRSDKTPITWLGRLVAEAGSETINQEE
ALQLVRSSAWSRAKVVDPVPILANYYWPIPVPALVVEALQRKVHTWHEGAASRTNAASLVHAMIGASYAQWNPAHQALNL
TPAQVQGAWPHRYATTPGDVPCLAEAIEAATEIYGGSQSITARLLLSASVNGPVIHTLGQLDQLQGAMKTKPSKSTCLIS
DNEYEVARAFPVDNRYTKTTNTGYEKKSAHSSPKYNRNQVEYSPPQERNRSSRAKYSPPQRSPIERAMFGFLIAKSGLSK
EKIxLLGDDGQRDLAKTLGFQDYRAKPKNE
>ChIAP_gag#LTR/ERVK gi|74591|pir||FOHYIH retrovirus-related gag polyprotein - golden hamster intracisternal A-particle H18 [Mesocricetus auratus]
MGSSQSVVTALQTVLKQRDLKIAPRTLQNFMKEVDRVAPWYACSGSLTVASWNKLGKELDRKHAEGDLCLGTKAIWKLVK
NCLEDEACHPAIIESQGTLEEVQDSMSETERSERMGARKRKDMSKKKGPPQEVKKGGEKEGSYHSPLNKSKKKKKPESSQ
YPAVELEALELDNSDSDTLDSSEEGGLEEEVARYEEKRYHPDRHRPLKTKMNVRPPPINPAGSRPSAPPPYELRLNTGTD
SFLPLEERRKIQMAFPVFENAEGGRVHTPVDYNQIKELAESVRNYGVNANFTTLQVERLANFAMTPTDWQTTVKAVLPNM
GQYMEWKALWYDAAQAQARVNATAGRSSGHLTKIVQGPQEPFSDFVARMTEAASRIFGDSEQAMPLIEQLVYEQATQECR
AAIAPRKSKGLQDWLRVCRELGGPLTNAGLAAAILQTHRYRDLSNRKACFNCGRMGHLKKDCQAPERTRESKLCYRCGKG
YHRASECGIMDSGADKSIISLHWWPKSWPTVVSSHSLQGLGYQSSPAISASALTWRDAEGKQGCFTPYVLPLPVNLWGRD
VLQAMGMTLTNE
>ERV1_MD_env#LTR/ERVK 5238-6986  [Monodelphis domestica]
MTFTILTLLNICHAEVYWSIVPKPPILRMLTWMDKPPLVYVNNTDWLPHPILAKRVPLESEGALYNYSGSTVYPPFCMSF
RNSFIGNSFCVPRRHQAWIVKNATDNSYVGVGMGVIGMGDELARKTFQPKHPANKYLCPNQIGTVQKELPWTDCSVRVPR
KVKMPATTDFNIYNWAPRLRCGRSEQLTRLDKYTDYEKWHMPCQNFQKIEDLLEVDMAGSRLAIEAGPIQNTQWKIVAAT
QPIYKFKVKVKNSGLDLEYDSHINVTACVFAPYVMLVGNNLRIFKNDQGLYEINCTKCRLHQCLSPKHQDSYVAIMYHPP
LMWVPVNLTETWASTPTVHIVQKAFNMVIHRSKRMVLEIVGAVVSVIAMITSLTTATLALTSSIQNHEFIQEVVSNSSKL
WHTQQSIDLAYRDELDSLKDAVFWLGKEVEALHTRITYPCHYNQTGYCITPLPYDNVSYEWQLVVQHIKGAWGSHNSTLD
IIKLQQQINKLDQIVYENEAANIAANWEATLSSLDPQNWFGRANLTSIGTIILFILLAIGLIILCSRSCKNRAYIRGILP
ELARSYHTRQLVPENVELNTTVL
>EAV-HP_gagenv#LTR/ERVK gi|49248518|ref|YP_031678.1| Gag-env fusion protein [Avian endogenous retrovirus EAV-HP]
MDQVIKVLVQFCKDYCGKSTPSRKEIATVLSLLNELGELDSPRHVLDSSRWDLLTLALCQRAMASQKATELKTWGLMLGA
LKAARAEHKLGAVMSGEGAPGSGSLEFCRTGAQTGAQTTANKTATEREEDCEKDNEESQRLGGGATTPTAPPNSIALSPP
PPYPKQPLYPSLATTSEQGAGPSPKGKGEGRLKLTDWGQIKEEVAQKGLAATYTLPVVVSEEGGPIWVPLDPKGVARMIE
AVEKKGLKSPLTMNALEALTASGPMLPYDIENLMRMVLKPVQYTLWREEWHTKLKQMLITAQGDQRNPIYGSDIQRLTGN
APGLLTPQAQVCQLRPGELIATTDAAIDAFRKLARSAEPTTPWTEIAQGPTEPFQEFADRLIKAVEGSDLPRAVHGPVIL
DCLYQKSSEGVQGILRAAPGRLQTPGEAIKYVLDKQKACPSVAGEVAAAVAGVMMACREADHRSADRQLGPCFKCGQLGH
IRAQCRMGTGGGVTCQQCGRKGHAAPQCRARRPPSQGNNNGRQSEHGDIIFRPMQAPDLSLPMAALSLSTHERPLVKATI
SCTNLPPDFQGPLSIFVTALIDSGADVTVVTETEWPSSWPAEASQSIMGVGGATPSRRSTNEVQAVVINRDGSLEKPALL
TPLVARVPGTLLGRDFLRQIGIPQYPLNTFKGYVTNVTACDNDADLASQTACLIKALNTTLPWDPQELDILGSQMIKNGT
TRTCVTFGSVCYKENNRSIVCHNFDGNFNGTGGAEAELRDFIAKWKSDDLLIRPYVNQSWTMVSPINVESFSISRRYCGF
TSNETRYYRGDLSNWCGSKRGKWSAGYSNGTKCSSNTTGCGGNCTTEWNYYAYGFTFGKQPEVLWNNGTAKALPPGIFLI
CGDRAWQGIPRNALGGPCYLGQLTMLSPNFTTWIAYGPNITGHRRSRRSLSRLSPDCGDELQLWSVTARIFASFFAPGIA
AAQALKEIERLACWSVKQANLTSLILNAMLEDTSSIRHAVLQNRAAIDFLLLAQGHGCQDVEGMCCFNLSDHSESIHKAL
QAMKEHTEKIRVEDDPIGDWFTRTFGDLGRWLAKGVKTLLFALLVIACLLAIIPCLIKCFQDCLLRTMNQFMDERIKYHR
IREQL
>ENSUPMET#DNA/CMC-EnSpm join2701-3420 [Medicago truncatula]
MDKSWISNKSITKEEYIRGVLSFMDFAFANSSENGKIFCPCKKCVNCYKRTRMDVYEHVINHGFLKGYIHWIFHGEKENP
SNPLCASEVEHEFDHDMDALIHDAFPMHTNSDNDDDAYTNIEDRGSEAFTNNHNAQQSEEDDDAKKFYKLLKDAEQDLYP
GCTRXYSKLSFIVHLYHIKCLYGWSDKSLSMLLELLNDAFPDENTLPNSFYETKKIITXLGLSYEKIHACPNDCMLYWRD
DHXNACPKCGLSRWKVNSDDVEGRKKIPLKVLRYFPFKPRLQRLFMSSKTAYFMRWHQDDRSKDGIMRHPADSFAWKDFD
RRHSDFARDPRNVRLGLATDGFNPFKTMSXXSHSTWPVVLIPYNLPPWMCMKQPNFILSLLIPGPNSPGNNIDVYLQPLI
EELKELWEIGVRTFDASKKESFQMHAAIMWTINDFPAYAXLSGWSTKGRFACPCCSFDTTSKWLRHSRKFCYMCHRRLLE
PDHKWRYNKGHFDGNQEFRAPPELPNGTIALKQMEEHGIGTPSPWKKKCILFTLPYWEYNVLRHNLDVMHIEKNVCDNII
GTLLDLERKSKDNDKARYDLIDMNIRSQLHPRIHQCNGKKYLPRACYQMTSKEKESFLEVLKNLKAPDEYLSSISRCVQV
KQRKISGLKSHDNHLLMQELLPIAMKGCLPDKVTKVISELCNFFKELCGKVLNEHNLDGLEHRIAKTLCQLEKIFPPSFF
TVMVHLAIHLAYEAKVAGPVHYRWMYPVERYEICLFIKKMILSYFNIKSFCRFLFTLKSFVRNRAHPEGSIAESYIAYEG
LIFCSRYLPGVETRFNRPSRNDDSFFVENSSLFNPRGRPLGRKSHIGFKVKKRRRVSRVSLDKKTLIQAHRYVLFNNNNV
DPFQREHIDLIKRQNRNRRLSPYELDRIHCQTFSDWFRERVSFTKLFHYQYCVSFHNHFK
>L1_AC_20_gag#LINE/L1 233-991  [Anolis carolinensis]
MASKRELQNIQQMITELSETLNPKVDMLLKQMKTIQQDNKLIKKKLKQTEKRTQQNQNEIAALRYKVAELSDRQRRKNLR
LSGFPEEISAENLQVEIILWLQGLNMEIVQTQIERVHRTFHHAKRGGVRDIIMAFTTESKRDEVFKLLKANRDLTYKGKK
IIPKHDLSPESLKIKALLKTYADRLTAHGIKFSWVLPMAILVYKDKEKYTARTPEQAHSMLDKLGLPLTSETKDSTEKKG
EESESEEGDEDED
>L1_AC_19_pol#LINE/L1 1785-5553 via tfasty with L1-1_Acar_pol, 2 frameshifts. [Anolis carolinensis]
MGDEIIVISINVNGLSSPVKRQKIAKLLLEEHADVCLLQETHKGKDTSKLMNLNGWELQYESRGSNKARGVAILIKDIHK
FELEKQIVDREGRFVMIRGKLNNKEITIVSIYAPNKNQLGFIQKYCAKIVKQAKGDIIIGGDLNMELYKQTKKTGQNPGR
LECKINFKKWNLIEAQNRLGEEGTTPTFYSHRHTKFSAIDYFIVGINNIQPIREVKVGNHWPGDHAPLLLKLGIPIRKSP
RKWIFNPKVTFNEKDKQVIKQQIQEFFHFNRQPQIKEEILWDAFKATIRGTCISMEIGINRKEKITIQNLRSEVEDAFLR
FQKIPSNENKTKWKEKKQQLDNLDKIETTKKYLWIKNDYQINSINNSKRLARVLKSKQARNRILKLKDDRGHLRASDKEI
REIMASYYEKLYEGKDLTKRIGLLGKPINKQSESILNSTITKSEIEKTIENLKTNTSPGPDGFTSNLYKIFKDEITPNLF
ILFNEILGNQFVPNSWKLSEILTILKPNKDETDPNSYRPISLCNVDYKIFTKILANRLKDIIPDIIHEDQYGFIKNRKLA
DPIRNILNILNHATRKKSKVLILKLDFCKAFDSLDHKYLNRLCEESNMGGKVCKVIKELYTENKATILVNGEQTRQININ
RGTKQGCPLSPALFSLAIEPLANSVRNNPAIKGYKVGKEVIKINLYADDVMIILGEVEESLQSIVRTVKDFGKTSGLTIN
LGKSEILHKNLTWEELKKVQNIMGIKLGNKKMKYLGVDIPKNINNIIPMNYNHLWKNMSKQIISWGKKFRDISSRLKIYK
MKILPKFLFLFQTLPVNIPINLLKKWDNSFKKWVVGGNKNRIANFLYYSKQELGGWGAPSLGLYYEASQLVRLLEFELEG
SKKWVQIEKEANNWLKGTSMGERIDIKDLKNIKAGPCLTMLSIWKKWQTKLQINKIDPFPLETLENKDKTFRNIIKALKE
NGIKRIGDLMDPNGEILKWDKIKDKCGQGNWIAWLGLSSKAQAMKRREVGETPLDRIIRRKLETDKGMIGLWYDVLITLT
YNTKEMLTEIWKQDKKNFTEKLIGSWINNIHKINHIRIKETQRKIITKWYRTPLQLAHITGSTSNKCWHKCGGIGSFSHM
WWDCRKIQIFYSKIRKEMEEIIGKELIWDKARFMSLTIKVREDNNNWTEILKYMTAAIQATIARGWRDETKWNVEIWWSY
ISEYIINDFINQRKRKYTNCLKEPDWFRKWSVLINKIDGDERYTTLNQAFHTVKMIQ
>L1_Canis1_pol#LINE/L1 2120-5697 [Canis]
MMTLNSYLSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYSLKIKGWRTIYHSNGPQKKAGVAILISD
KLKFTPKTVVRDEEGHYIILKGSIQQEDLTIXNXYAPNVGAAKYINQLITKVKTYLDNNTLILGDFNLALSTLDRSSKHN
ISKETRALNDTLDQMDFTDIYRTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLNRYQKIGIVPCIFSDHNALKLELNHN
KKFGRTSNTWRLRTILLKDERVNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKYIAIQASIQKLERTQIQKLTLH
IKELEKKQQIDPTPRRRRELIKIRAELNEIETRRTVEQINRTRSWFFERINKIDKPLASLIKKKREKTQINKIMNEKGEI
TTNTKEIQTILKTYYEQLYANKLGNVEEMDAFLESHKLPKLEQEEIENLNRPITREEIEAVIKNLPRHKSPGPDGFPGEF
YQTFXEETIPILLKLFGKIERDGVLPNSFYEASITLIPKPDKDPTKKENYRPISLMNMDAKILNKILANRIQQYIKKIIH
HDQVGFIPGTQGWFNTRKTINVIHHISKRKTKNHMILSLDAEKAFDKIQHPFLIKTLQSVGIEGTFLNILKAIYEKPTAN
IILNGEALGAFPLRSGTRQGCPLSPLLFNIVLEVLASAIRQQKDIKGIQIGKEEVKLSLFADDMILYIENPKASTPRLLE
LIQQFGSVAGYKINAQKSVAFLYTNNETEEREIKESIPFTIAPKSIRYLGINLTKEVKDLYPKNYRTLLKEIEEDTKRWK
NIPCSWIGRINIVKMSMLPRAIYTFNAIPIKIPWTFFRELEQIILRFVWNQKRPRIARGILKKKTIAGGITMPDFRLYYK
AVVIKTVWYWHKNRHIDQWNRIENPEVDPQLYGQLIFDKGGKTIHWKKDSLFNKWCWENWTSTCRRMKLDHSLXPYTKIN
SKWMKDLNVRQDSIKILEENTGNTLFELGHSNFLQDTSTKAKETKAKMNYWDFIKIRSFCTAKXTVNKTKRQPTEWEKIF
ANDVSDKGLVSKIYKELIKLNTKETNNPIMKWAKDMNRNLTEEDIDMANXHMRKCSASLAIREIQIKTTMRYHLTPVRMG
KINKAGNHKCWRGCGERGTLLHCWWECELVQPLWKTVWRFLKELKIDLPYDPAIALLGIYPKDTDAMKRRDTC
>L1_Ele4_pol#LINE/L1 1417-4617  [Aedes aegypti]
MANRTSSYNIASINTNAISSNTKIQALRTFIRLTDLDIILLQEVEDPYLTIPGFNVITNVDSQKRGTAIALKSHMTCSNI
QRSLDSRVITVTLEGSVKIVNIYAPSGTTNYASRENFFQNIVPFYLQSTTEHLVLGGDFNCVVSHKDATGTSNFSPALGN
VLNSLHLKDTWDLLKPNQIQYSYIRPNCASRLDRLYISESLIEQLRTAEFYVTSFSDHKSYKIRCCLPNQGRNFGKGFWS
IRAHVLTEDNMQEFEIKWNRWLRERRNFSSWMSWWVNCAKPKIRSFFRWKTNESFRTFHAENEVLYQRLRTAYDNLYQNP
TGMTEINKIKGKMLLLQNQFSHSFERLNDKLISGEKLSTFQLADRIKRKKNSTITTITDNGRVLRNLDDIESHVFNYFNQ
LYATQNHQPSTNFPSNRTIDMNCEANNEAMNEITTEDIFFAIQSAAGRKSPGNDGIPKEFYVKAFDIIHRQLNLILNEAL
QGNLPLEFLEGVIVLCRKNSNHSSITAYRPITLLNCDYKLLARILKLRLEKIMINNRILNENQKCSNSGKNIFEAVLGIK
DKIAEINCKRKVGKLISFDLDHAFDRVDQNYLLSIMREIRFNNDLIAILEKIMQNSRSKILINGHLSQNVPIQRSIRQGD
PLSMHLFVIYLHPLIEKLCTICDNRLELVVAYADDISVIIVDDHKIGVVRKAFENFGLCSGAVLNLAKTIALNIGSNNDR
SNMYEWLNIHDSVKILGITYFNSLKRTIDHNWTEIIRSTSRLMWLYKTRLLSLHQKIILLNTFITSKLWFAASILSIPNA
ILARITSQMGYFIWGRYPTRIAMDQLSLPFDKGGLNLQLPMHKCKALLINRFLRCKQNLPFANSFEELMSNPPHIQGIPA
LYPCLKVIAKEVPYLPEHIIEHLSAIELHKYYKSKLSTPKVMIEQSTVSWSKIWSNIRNKSLSPDEKSCYYLLVNGKIPH
ATSLYRQNRLQSPMCQICRGANEDLEHKFSVCIRVRHLWNHILPKLEIITGRRHKFRDFSLPELKNIEASAKRKALKLFI
VYVKFIIEENVNLTTEALDFVLDYKLL
>L1_Carn2_gag#LINE/L1 L1_Carn2_1144-2033 via tfasty with L1MA6_gag, 1 frameshift and 1 stopcodon. [Carnivora]
MPRRRNLSQMKEQDKATARDLSETDISNMPDGEFKATIIRILTGLEKRIEDISETLTTEIKELKKNQSEMKNAINEIGNR
LDAMNSRLEEAEEXISDLEDKIMENNEAEQKRERRIMQHENRLRELSDSIKRNNIRIIGVPEEEERAKGAENLFEEIIAE
NFPNLGKETDIQIQEAQRTPIKINKSRPTPRHIVIKFAKYSDKEKILKAARQKKSLTYKGKPIRLAGDFSTETWQARREW
HDIFKVLNGKNLQPRILYPARLSFRIEGEIKSFPDKQKLKEFVTTKPALQEILKGTL
>L1_AC_16#LINE/L1 2085-5931 via tfasty with L1-1_Acar_pol, 1 frameshift. [Anolis carolinensis]
MEEYVRVVSLNCKGLGSVYKRKIIADMIYKAKAHFAFLQETHQAKSGVNELKMRGSVTYIKSYGTSKSKGVAIIIQNQCG
FNIKETKIDELGRYIIIQGTMGGEDFTLANVYAPNTNQAEFYETIFKEIEGIQKGYLILGGDFNGIIDEEMDKSHFTMKR
KGKTQKNTILSKVIRNKKMIDIWRMLKGNEKRFTFHSMAHQNFSRIDYFFVSPNMLPKIVDAGIGVIKCSDHALISLDFQ
IKKDYKTYKNWKVGNAILENNKMVEKIAKELGEIWEINDNNQCSYAMVWDTMKAVTRGLFIKEACNLKREQEVERKKLEL
EIQELEKRYVKDKDKQSYLKALAKRKELEKYNLEKAQRDLIYTKREYFEYSNRNSKMLARAAQDKRSKNLIGTIRDKWGR
EAISMKEKLAVFQEFYQKLYTAVDNPNNRIEEVIDKYWKIELQEIDKKSMEQLVSEKEIEEVIDKLKGGKTPGMDGLGPE
YYKKFKLMLVPKLKELYNRIMAGEQIPPSWQESRIILILKPNKDPTDPGSYRPISLINQDAKILTAIMAKRINSFIYNYI
QKDQCGFIPGRNMSNLVGRVLNIIHKIKGKKSKAGILALDIFKAFDCVSWTALKKILEKFGLGERFRGLIDKLYSTNYAA
IQVNDGLTEKIRLTRGTRQGCPLSPTLFAIVIEILANMIREDTNIKGIGREGRYKICLFADDTLLSLENPIEQLKRIETH
LTEFGEVTGLQVNWNKSEILLFNYTKEEEERIREGGLCRIKIKKSIKYLGINISKEIGNLERDNIIRLRKNVKDTLAKFT
KLKLSWFGRIALIKMKILPKINFLFRMLPIKISTGEITNWQNMINTFCNGNKRARINKEKWYKIQKNGGLGIPNLKLYYM
ANQLRYIIEGIIGQEDLEWLEEESKDIDMKLENIFFIGKTRNSEKKWYNKIGNPFLKNILEIWAKYEEKLIPPISPLTPV
LITKKFPMNLKRELERTFKEKGMMKLKDWESKMKNLGEIRNQLSGSIGWYKVLQLERWAREIRKKYKGDRELTKFEKMIS
QRGGREGKERTKGITSDIYKLLIDKEQEQDHLKEMWELDCNKEIHPQIWKEMWNMRILKNMSIRIKENYYKVVWRWYLTP
IRLNQIDKKYSKQCWRGCQENGTYIHMWWSCKYVQKFWENVFKEIKGITKIEIIGTPEIALLSFMDNIQVSKELKELIAN
LLTAARLLIAKKWKGSEECQLEEWYKEVWDIAINDKLTCKIKIKRGILKKDDFGKIWGKFIEFVYVEGKGKKPVKETMEF
WK
>L1-100_CSav_pol#LINE/L1 1512-5048  [Ciona savignyi]
MDITNNNEIIINNYPLNVATLNINGLKTKVNHLNNYINNNNIDIXCVQETHRVDSETISKIENQFHLSSFFNTTISNDPK
NKCHYGTAIFFKQHILNNFNVTHNILIKNMINIVTLTNNNLKLTVINVYLPCGTLNRIKRKEYINIINDSITTSGTSHYI
ILGDFNMITNELDTKNNYDKRTKVDRTAWAKLEKXKLINDAFRKLNKFEINFSRITATSSTRIDRIYISINLNQFASRYC
HKRNFFTDHNNCPILSLNLQNSKRWGPSYYKINNSILNDNHIIETMIYQWENWTLQKXKYSNILKWWDDGKTMLKNISID
XSKTKAQKEKINYENALIEXLTQNRQPETTNRNKIINILENNISIYEKTINQGALIRSKLKEITDEETTTRNFFDYEKSR
QKRDAIYKVLNRDGILTENEIQTVKAVEDYYKDLWGKEPNTINPENYLSDLNPIPFDDDIFQLNKPININEIEIALNETK
DNSSPGSDGPSYLIYKILFPTIKYDLEEVFNNIYLKNNLSETMKSSIVKLIHKKGDKTNLKNWRPISILNCDYKILSKII
SNRLNTIIQKIISPNQKCGLKERRINDALYNIQGVIDSGKYFNKNLTIXAIDFEKAFDRTDPKFIIKICEKXNXPIXIIK
WIKIMYNDINSKIEINGTLTNNIKIKRGIRQGCPLSMLLFLINMEVLTRKINNNXNIIGYRLNKIETKTEQYADDLTIFS
GDNSSIKHIFQELDDYEKVSDQKINFTKSQIISNDVLSINEIKNIRPNIHITDTIKILGIFFNLKHKCINQNWKKATKNI
TNILNINKKRKLTLKGKKAIINTLILPTINTVGDLFQIDKDSVNKINNQIFNFIWFPTKFELMKRNKLYASYKNGGLQFP
HIKTKLDALKATRLFKLKNINQITEIWQEWARFNFGSTMKKXNXSLYTNSLPNKDFPEPFYRNLRHIFYKLTNENYDWDN
GKTRDFYNALIAEIAITTEIKNNDCVIPWKNISFQNKTINNFFTNTDEDIAYKLAQKIIPHGFWFESRXISNIHDGKTII
RQCKFCRYGSDNFEHIFLKCKIVKIIIDKLFQYANNISVKQYTRNDNLILYNKGNNSQKRDLLVIKILSIAKKEILREKQ
KLDIKNIYLWDNIEFSRKTLWIVKIKFKYSIRKLITYFNHKYIYEILYLKNNFSPYDET
>L1-96_Cis_pol#LINE/L1 1043-4866 via tfasty with L1-95_Cis_pol, 1 frameshift. [Ciona savignyi]
MCLSNEQLPSVLYIHLMATKILTYNVAGIRTTKKRRSVFNFLRNKGAHIVMLQETHSTKSTIKLWEMEWGGDIIASHGSG
NARGVAILIRGKGKYQILKSETDGEGRFVLAQIMINDVAVTLGCVYGPNKDDPAFFTNMFTKLNSFTNEVIILGGDFNVV
LQNDMDKAGGKAAHQNRNARNEIIEYMEHFNLYDAFRAKNPTKRVFTRTQYNPLVATRLDFFLTSEKLKPKVIECDIKAS
IRSDHKLVSLDIDLRVLPRGPGYWKLNCSLLNDNKFVALIKESIKDYLMINDTGEVKPDVVWDALKAVLRGIIIKYSAET
RKRITQKQKKLEKDILLLDAEVIDPNTRNNDAVAKLQKARSDLDTFIEKRTKGAIIRSKAKWAEKGEKNTSFFLNLEKHK
SEKKGITRLKINNILNTNQTQILQELHRFYGNLYSENRQGNVAEELDNYLHDIPNTLSIEHEKMAMCEGNLTETECYAAL
KELSNNKSPGMDGFPTEFYKAFWDSLKNIFLKCANFCFEQGHLSTTQKCGTTILILKKDKDPNIVDNYRPITLLNTDYKI
MSKALNNRIRTVLPSLIHKDQNGFLPGRFIGNNIRLLFNAIDYADYAQIPLTMVALDIYKAFDSLSWNFIGKALETFGFG
PKLRKWIRVLYQDAVAMIVNNNFLSPKFRIERGVRQGDPLSPSLFLICIECLAIKLRNNVQIPGMVIGNRDIKVSLLADD
TLIFTNGDTTALNELFKELQKFDRVSGCRVNWSKSVALHAGSNRNSPATPLHDKGLQWPTESFKYLGAIIPVTRNSLPFE
PNFSNSLNKLRTVINLWKARNLTLLGKVTVIKSLLIPTLIYKVGIVPGVIPKDFIKNLKRLIYTFLWGSTWERVKRETLS
CPIEEGGANMLDIDAYLLSLQMKWVVKFLNDNYSSAWKTIETEVTSSTALFAAVKSKLPTENKQIAKHFPLRSTRCNIQA
WRATLGICVKNEFLQTQKVSLWFNKNVRYRNQPMFIENLANAGLVQLNQITDHAEGYLSYDEVARKLSLLPNNTDFIEYI
KLISAIQKPLNDASTDITTPALAYGTAVADIVLEKCQTVKNTYIWISKHLQIRPRKKELEWVKDTNSTPPPTESWENIYK
NSFYCTLESRLRSFQIKLNLRAIVTNDILYKFGKVDSDLCVFCKGDKETLLHIFCECPEVIKYWENVSAWICANLRLPLV
VGNTEKLFGFPGNCNQLVNCLLLCARFVIYKCKVQQISPVFEIFKNLVIEIRTSEKIIAKSKNKSLNHKLKWASV
>L1_AC_3_pol#LINE/L1 2268-6238 via tfasty with L1-23_ACar_pol, 1 frameshift. [Anolis carolinensis]
MSKVSCQLKCFSNNVNGLNSPNKRNRLFNKLRKEKYNIIAIQETHIDLKHVKLLNKGYLGQSFISADNVKKRGVVLYIDD
KFPAKETFKDNEGRVIAVTIDFEKENFLICNIYAPNGPKSKFTKTLTENIKNSEFDHLILLGDFNGVLDVELDKTNRTKR
VKVTPSLPKNLIALKEEYDLIDPWRELNPKRKDYTHFSNRHQAWSRIDMIWTSKSLSTTISKIDILARDLSDHCPLIMII
NKKYVQKKWRLNENLLKKEQDIIKIKAMTKEYFSINDNGETSSQIVWDAYKAVARGFLIQLNSSKRRQKDLERVRLNKEI
EEKEKELKANPKNQEIKRNLALLVKMKERGDLEEVAKQIKWVKQQAFENANKPGKWLARLIRKKKQNKQIMKIKTEGKIV
NSDKEISEAFQKYYEYLYSKDNINPENITEYLGKQKLDKITDEQRLDLNREIAEKEILIAIRSLDSNKTPGPDGFIAGFY
KLEQSEVILFLKKLMNQALQTQVIPESWREATITMIPKEGVDLSEVRNYRPISLLNTDYKIFTKILANRLKEFLEGWIGE
DQTGFLPSRSIKDNVRIIIDALEFYEQHNQREVGFLSVDAEKAFDNLNWTFFKLLFQELDLGAQIQNGINSIYDVQWAKI
LINGQETNKIKINKGTRQGCPLSPLIFIMALEILLKAIQKDTNLQGIRLDKQDYKYRAFADDVICIIENPIQNILKWTAK
IEEFGRVAGLKINKKKTMILTKNMSKRKQKELQEISGMETPAKIKYLGIWISAKNNQLLDLNYTRKWKEIKGDLEKWKNL
NVSLLGRIAVIKMNILPKLLYLFQNIPIIRSTKLFKDWQKEIMRFIWRNKKARIKYSTMIAQKAQGGFGVPDLNLYHDAC
ALCWLKDWVKLQKIKILNLEGHELRRGWHGYLWYGKTKIEKQFGNHFIRSALFRIWDKYKCRFHTKTPLWLSPVEADHRR
LLGWRNWPTYRELLIIENVKKKPPLLKELVTIQGINRNVSWYQYFQIREAYRRDNMVGFDQEQGFWDKFILINKKNISIM
YNNLLTWDTETVRVTNAMVLWAKNIERPIQMYEWESIWNKKIKYTYSADLKENWLKLLHRWYLTPKKIGQMYKNTNNKCW
RCKTHTGTYFHMWWKCKKLEKFWTGILEESNIILKTKFVKKPELLLLGLYDPRDKIDPNIDKLFTLFITAARLVIARLWK
STETPTKELWLEKLLEIKNMDQLSFLIKRMNGAPMKTTDWTYLEDYLRKKNTNKLCWIRNNIRRIINGSSIIYPFTTPLP
PLPFLSGFFFLFLLFLFLFSLYVCLSFTRPSRGYCIIIILMYGE
>L1_AC_5_pol#LINE/L1 2186-5939 via tfasty with L1_AC_2_pol, 1 frameshift. [Anolis carolinensis]
MSNVCCHLKCFSNNINGLNTPIKRKRLFNKLRKENYSIIALQETHIERTHSNLLNNNQLEKAFVSANVSKKRGVALYVDD
NLTVKEAFKDDEGRVIAILIDLEEEKTLICNIYAPNGPKTKFTKTLRENISNVEFDHIIILGDFNGVLDKELDKTRQPKK
VKEATSLPKNLLALKDELDLVDTWRELNPQKKDYTHFSNRHQSWSRIDMIWASKSLVTKISDIRILPRDLSDHCPIVMEL
NKKRFIRKWRLNENLLKDKQDIDKIKAMTKEYFSINDTNEMNPQIVWDAYKAVARGYLIQLSAIKRKQKEVEWNRLNKEI
EMKEKELKSNPKNKKIKRNLDLLNKMKESRDLEKLAKQIKWVKQYAFDNANKPGKWLARLIRKKKQSRQIIKIKTEGKIV
NSDEEIKEVFQRYYENLYSKDNINPEAITEFLGKLKLDKITEEQRRELNKEITEEEILKVINSLDSNKTPGPDGFIAGFY
KLGLKEAISFLKKLMNQALQSKVIPDSWKEATIVMIPKEGLDMSEVKNYRPISLLNTDYKIFTKILANRLKDFLVEWIGE
DQTGFLPARSIKDNVRIIIDALEYYEQHNQTEVGFLSLDAEKAFDNLNWNFFKLLFQELDLGFQIQNGINSIYEDQWAKI
QLNGQETNKFAISKGTRQGCPLSPLIFIMALETLLRAIRNDSNLQGPRIDKQDYKYRAFADDVICIIENPIQNIKNWLLK
IEEYGNVAGLKINTKKTMILTKNMSKKKQKELHDISGLKTVSKLKYLGIWLSAKNNQLLDLNYVGKWKEIRSDLEKWNNL
NVSLVGRIAIIKMNVLPKLLYLFQNLPIIRSPKIFKDWQKDISKFIWRGKKPRIKFSTMISPKTQGGFGLPNLKLYHDAS
ALLWIKEWIKLEKTKILNLEGHELRKEWHGYLWYGKMKIDKQFGNHFIRSVLLRTWDKYKCRFHTKTPLWLSPIEADHRR
LLGWRKWPTYSQLLIMAKDKKISPKLKELVEIQKLNKNVSWYQFFQINEAYKRDKIVGFDQEQDKFIHVDRKSISILYNK
LLSWEIETELVTNSMILWARNINRPIQLCEWESIWNKKIKYTYSVDMKENWLKLIHRWYLTPKKIGHMYKDANNKCWRCK
AQIGSYFHMWWKCRKLDNFWTIILEESNDILKTKFVKRPELLLLGLYDPEDKIDINTDKLFTFFITAARLLIARLWKSTQ
VPTKEQWLEKVMEIKNMDQLSFWIKRSNGIPLKATDWSNFEDYLRKKLQKN
>L1_AC_4_gag#LINE/L1 1181-2240 via tfasty with L1-23_ACar_gag, 1 frameshift. [Anolis carolinensis]
MAIPKWKVEKDRMDSRINVRRSSLPEEGSLKDILMEIRKISEKQDLLQNEVQTMAKKQDLQYKSFQEEMADLKKEWREEI
GAMKKEIIKNSNDISDLKIANRTNDKTQSKLQEKIEIMEEKGSKLEKMQERLEYQALEFQLRYRNVQEEEKEDIGWVITQ
LTAQLLQCTEQEACGQIDRVYRVQSNYTKKNKVVKDVIVHFLKKTTRDEVPRRNARNPIWYKERKVIILKEYPKSTLNRR
RKYYFLTDELKKRQIKYRWEKYEGLMATYKEDKIWITTEEEAKDFFRMLKKDVNINRPSLSSGSGKNPKETKKRRFESPK
YKDATVAELDLNTDQEDSEVDGPKEDEETHRDE
>L1_Ele9_pol#LINE/L1 1362-4547  [Aedes aegypti]
MDSSSYIIGTVNINNITNKTKLEALHHFVRSQDVDILLLQEVENSSISIQGFNIIFNVDHTRRGTAIALKSHIKYTHVER
SLDTRLIAVRIHDKVTIINIYAPSGTQNRASRESFFNTTLAYYLRRATEQVIIGGDFNAIIHPKDATGESNFSLSLKNTV
QQAQIHDVWDRLRRRVTQHTYITHNSASRIDRIYVSTGLLEHLRNVDTHVCSFTNHHALTVRLCLPNLGRATGRGYWSIR
PHVLTVENMDEFQLKWDYWTRRRHNYNSWMHWWLTFAKHKIRSFFRWKTKLKYDEFHDRYQYLYSQLREAYDRYFGDRSV
LPTINLIKGKMLRLQSEFSKMFVHANESFVSGEPISAFQVGESRRKRTIINRLDLSDTEYIEDSTEIENHVYEHFREMYS
QREETLNTEFHMVKCIPDDSRANAKCMDPISTEEIYFAIKGSASKKSAGPDGLPKEFYAKAFDIIHVHLNLILNEALRGE
FTSDFTNGVIVLIKKKGTNNTLKSYRPISLLNVDFKLLSRILKTRVERVMTQHSVISSSQKCSNHKRNIYQATLSLKDRI
AHLRENKRCGKLVSFDLESAFDRVNRTFLFDTMSSLGFNANLIELLSKIGTLSNSRILVNGHLSREFPVQRSVRQGDPIA
MHLFAIYLQPLITKLEHCLNDPEDLLVVYADDVTIITTDINKIERARLLFEQFGNSSGACLNISKTISLDIGLISDNNRL
IISWLSTTDRVKILGIVFTNSVRLMTNFNWDPLISKFAQQLWMHKMRLLSLHQKIVLLNSYVSSKIWYVASIVNINKSHI
AKLTTLMNTFLWSGCRNRIPINQLALDIEEGGLKLQLPGFKCKALLISRHLKEIESMPFYSTYLENVGNPPNVRIIPSNC
PCLQSIVQEAAYLPEQLESHPSPKKVMYAFLKKVTIPKIMQKHPEVCWKHVWCSIASKTLSSDERSLYYILINQKVMHRT
LLVSMQLADTATCLHCSSADEDLEHLFSKCQRVRDSWRILTQMIEAVVGRAYSFSELLFSNIHTSREKKTKTMKLFINYV
KFINNVNNTVDASAIKFHLENL
>L1PA10_gag#LINE/L1 L1PA10_5end_1206-2246 via tfasty with L1PA2_gag, 1 stopcodon.  [Primates]
MRKNQRKNAENSKSQSASSPPNDRNTSPARAQNWAEAEMDELTEVGFRRWVITNFAELKEHVLTQCKEAKNHDKTLQELL
TRITSLERNINDLMELKNTTRELHNATTSINSRIDQAEERISELEDYLAEIRQADKIREKRMKRNEQNLRELWDYVKRPN
LRLIGVPERDGENGTKLENILQDIIQENFPNLARQANIQIQEIQRTPVRYSMRRSTPRHIIIRFSKVEMKEKMLRAAREK
GQVTYKGKPIRLTADLSAETLQARRDWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFSDKQMLREFVTTRPALQELL
KEALNMERKNRYQPLQKHTEVQRPMTL
>L1MEi_gag#LINE/L1 630-1607 [Mammalia]
MSLQTKIPKHMKKSNAKKDSQQNQQSEHEFTPDEINFIEQSDKDFKISMFRMLKEINEGITSIKKEQEIMKQKQAEMKQE
QVDMKKNQLEILEMKNIVIEIKNSIDGINSRLDTVEERISELEDSTEEFTQNAAQRDKEIKNMKEQLRDMEDRLRGSNIR
LIGVPEEENRGNGGEAIFEEIMAENFPELKKDMSPQIESALRVPSRINKNKSTPRHIVVKLQNIKDKEKILKATREKRQI
TYKGTTIRLTADFSSATIDARRQWSNIFKVLRENNCQPRILYPAKLSFKSEGKIKTFSDIQRLREFTTHRPSLKELLKDV
LQQEEK
>L1VL1_gag#LINE/L1 L1VL1_5end_727-1128 (fragment) [Mus mouse genus]
MAGGKHKNRSNRNQGYLASSEPNSPTIASPGYTITPEKQDMDLKSLLMMMMEDFKKEIQENTGKQLEAFKEETQKSLREL
QENTTKQVMELNKTIQDLKMEVETIKKTQRETTLEIETLGKKSGTIDASISNRI
>LINE1-10_SBi_pol#LINE/L1 3570-6205 via tfasty with 50931797_Osa_pol, 9 frameshifts and 4 stopcodons. [Sorghum bicolor]
MGVLVRNRITNHRFWVMNVYGPAQHDLSEDFXQELSDFCARESLPVLMGGDFNLIRNNKERNQGQGDQRLMDLFNDFIGS
FQLREIFVSGAKFTWSNKQKNPTLVKLDRILASTSWEFKFPTCFAWAKARVGSDHCPLILDTGEEVETRPRYFFFDEQWL
QGEGFLTWFKIDGGFQRCLYQTILWISGMGACQSLRKYLRGWNLQLMGDQKRIKMIxQENSRVGxYSxTRLLSMEEWEER
IELEDKLESSQIRGIYWKQKAGNKWVLEGDANTHFFHQFANGRRRKNTISFLDSDDGEIRGQKEITDHIVDFYKNLFGPS
DPCSMNLEKLLAIWLCIYxGEKTDLVRPFGMEEIKGVIMDMKENSAPGPDGFSVSFFKKFWELLKGYVEMFQDFREGQLD
IKRLNFGVITLVPKVKEANTIKQYRPICLLNVDYKCFTKVLTNRLVPVAKRMIGKNQTGFIKGRNILEGVVVLHEVLHEL
HTSKALRGLVLKIDFEKAYDRVRWDFLEQVMERRGFPPKWIPWVMSTVRGGKVCINVNGERSAYFRTFRGLRQGDPLSPL
FSTVADALGVMLDKAVSKGHIKGVLDDLIPGGISHIQYADDTVIMIDGSDQSIRNLKLILYCFEWLTGLKINYHKSEVFV
FGVPQGEKERMANMLNCVLGEFPMKYLGIPISDKHLNMSAFILFPEDDQEIGSLERQTSDFRGETNSTNSCLSSIPLYCM
GFYWLQDGVHKKMDSIRANFLWQGAEDKFRYHMAKWEMVSRPKDQGGLGIINTRIMNDCLLVKWIWKILQEPDDLGLEIL
KAKYLEGGNFFSAPRKGGSQFWQGLHKVKHLFKWGATFKVGNGKNCRFWQDCWLQDVPLKIAYEDLYKMVRDPDVLLLIA
G
>LINE1-7_SBi_gag#LINE/L1 337-2610 [Sorghum bicolor]
DRTPIQVDVQDEAGWSPVRPKYWWRRADFTPQTKVRPLPSRVPSPRPAMVDRLRGKCLRCLAGGHSAAACRDPVRCLRCG
RSGHKSYECKAPSQRRHQGLLASPPPARPPRSNSFYPHCLPSSVMALAGDPELRPQETSAVAASNSAMDDALAHFSTHAV
VACLCRDNDDIGPDQVKRALCSRLCIREADIKVVRHKPEDFFIVFEHPHHRDAALDLHRLPAGNIVIRILPWRVLPYGDH
CDLRHHVRICLEGIPVHAWNESIAKRAVARSCDLDYVDPRSLRRDSRALCPDDTRALCLWAWTYNPSDIPKVTWLTLTGD
VVTAHDGPSPPKGRRGLTFRVLVHLDLIESPVDGHGTTSTRELTWHYGVVDGERRPRERHASPPPPDARHRRHRDDEDDD
DHRGRRRDSSRNWGSRLLRSLSRAPARERERSESRHGRRHDDRSHGGHRRHDLLEVANGVAAAHLHRPRDTNDYAASPTT
RGRSRERSNRRRKEGQRRSPARLEPREPSSQNRRQTCNPRCSPGSTNRHNDGSPSPPTVTESPPRAIPPSPDNSPMRRDV
LLTPDGTLTQPAHPPPLVQPALPQRPAVIGCSPARRFRPGVVYVRRRPNQTASRQPRDTQSSPPTELDGSRLEEGSSMDP
ATLTFVRAVSRPLPPALLQAPPRTAAQARRLPRRTVPATRKSTRIAAKNWPRGDAHAKARQVLMKKLGVPEDKALSPDDR
FLQYLGLFQGPLTNEAIQAMTALCGLDGDDGIVTASQA
>L1MEh_gag#LINE/L1 735-1658 [Mammalia]
MSSQAKITRHLRSTTTSKERQQTGQHIPSEAELLEQTDQEFKISIINILKEIREDISNMKQEQEIIKKNQVEILGMKNII
VEIKNTIDGINSRMDTAEERISELEDQIEELSQKAAGKDKEIENIKEKLRDMEDRSRSANIRIIGVPEGEEKENGEKEIF
EEIMEXNFPELKKDERPQIERAHRVPNRXDKRKPTPRHIIVKFKNIKDKEKILKASREKRQITYKGTRIRLTSDFSTATL
DARRQWSNIFKVLKEXNFEPRILYPAKLSFKCEGVIKIFSGIQGLRRFATQRPTLKTLLEEVLQXEGK
>L1_Ele13_gag#LINE/L1 148-1275 via tfasty with L1-3_CQ_gag, 1 stopcodon. [Aedes aegypti]
MSRRENTFRIDYSSVPKKPSYEDLHRFIANDLGLKKEEVLRIQCSRSAGCAFVKVCSLDVAQKVVSDHDNVHEVIVDDKP
YKLRIRLEDGAVEVKLFDLSEDVSKQKIEEFLSAYGEVLKASEQIWESKYEFSGVPTGLWVVRMMVKVNIPSYVTIDGEV
TYVQYFGQHQTCRHCEDFVHNGASCVQNKKLLLQKLSADKSNKQSYAKVAKQKPSTGAIVRPRSTNTTPSAVARQWTCPI
STAAICSRQDVPGPIYLTSQSSPLSPxKMVSPSCSVAVANTSSQSSSASNSNTTKSLAPPTAVKQLVVELPPLPVGKFKK
PTLQQQPIDNDENLTRSNRSDEEETDDSSSSKPRGRPPGKKARTHDGEGSRERKHR
>L1_Ele12_gag#LINE/L1 151-1191  [Aedes aegypti]
MSVRRENTFRIDYANVPKKPSFEELHDFVGSALGLSYEQVVQLQPSRALGCAFVKVVDLELAQKVVAENDNKHVXEVDGK
TYKLRITLEDGAVEVKLTDLSEDITNDQISEFLSAYGEVLSVTEQVWDSKYRFGGIPTGTRIVRMFVKRNIESYITIDGQ
TTNVVYFGQLHTCRYCNEYVHNGISCVQNKKLLVQKTYANVAKQAESNPSVAKPKATKQKTSFAKLFGPKPREVQQQEPS
TKTTTVTEIFPSLPKTNVSCPTGVTPIGQILTRANLAEQRKNLMPPPVLPQNLSTTSRMSTRQASDGNETDISSASNSSK
RRSGRPPGKKQRQNNEDDASEELAGQF
>L1_Mdo2_gag#LINE/L1 800-1765 [Monodelphis]
MANXTEAQKPQNXKKNKKKGATLDTFYGAKIQNTEEIEEETQANAPKPSKGNGNSPQTHEEFESEMIKKMEAFWEEKWEI
MQKKFTHLQNRFDQTEKENQALKVRIRQLEDNEQVKEQESIKQSQKTKKLEENIKYLTDKVTDLENRGRRDNLRIIGLPE
KPEINSKLDIVIQDIIKENCPEILEQGGNTATDRAHRTPSTLNPQKTTPRNVIAKFQSFQTKEKILQEARKRQFRYKGMP
IRVTQDLASSTLNDRKAWNMIFRKARELGLQPRISYPAKLTIYFQGKVWAFNKIEDFQVFAKKRPELCGKFDIEKQRAWN
T
>L1ME3_pol#LINE/L1 2285-6103  [Eutheria]
MAGVSPYLSIITLNVNGLNSPIKRHRLAEWMKKQDPLICCLQETHFTYKDTHRLKIKGWKKIFHANGNQKRAGVAILISD
KIDFKTKTIRRDKEGHYIMIKGSIQQEDITILNIYAPNXXASKYVKQKLTEXKGEIDKSTIIVGDFNTPLSVTDRTSRQK
ISKNIEDLNNXINKLDLXDXYRTLHXTTAEXTFFSSAHGTFTKTDHXLGHKASLNKFQRIEIIQSMFSDHSGIKLEINNK
KITRKSPNVWKLSNILLNNPWVKEEITMEIRKYFELNDNENTTYQNLWDAAKAVLRGKFIALNAYIRKEERLKINDXSXX
LKKLEKEXQIKPKESRRKEIIKIRAEINEIENKXTIEKINKAKXWFFEKINKIDKPLARLIKKKREKTQITNIRNEKGDI
TTDPTDIKRIIRGYYEQLYANKFENLDEXDKFLEKYNLPKLTQEEIENLNSPIXIKEIESVIKNLSTKKTPGPDGFTGEF
XQTFKEEIIPILHKLFQRIEKEGTLPNSFYEASITLIPKPDKDITRKENYRPXSLMNIDAKILNKILANRIQQYIKRIIH
HDQVGFIPGMQGWFNIQKSINVIHHINRIKEKNHMIISIDAEKAFDKIQHPFMIKTLSKLGIEGNFLNLIKSIYKKPTAN
IILNGEILXAFPLRLGXRQECPLSPLLFNIVLEVLASAIRQEKEIKGIRIGKEEIKLSLFADDMIVYIENPKESTDKLLE
LISEFSKVTGYKVNIQKSIVFLYTSNKQLENEIXKTIPFTIASKNIKYLGINLIKXVQDLYTENYKTLLREIKEDLNKWR
DIPCSWIGRLNIVKMSILPKLIYRFNAIPXKIPAGFFVEIDKLILKFIWKCKGPRIAKTILKKKNKVGGLTLPDIKTYYK
ATVIKTVWYWRKDRQIDQWNRIESPETDPHIYGHLIXDKGXXAXQWGKNSLFNKWCWXNWISIWKKMXLDPYLTPYTKIN
SRWIIDLNVKGKTIKLLEXNIGEYLYDLGVGKDFLNRTQKALTIXEKIDKXDYIKIKNFCSSKDTIKRVKRQATEWEXIF
AIHIXDKELISRIYKELLQINKKKTDNPIEKWAKDLNRHFTKEDIQMANKHMKRCSTSLVIREMQIKTTMRYHFTPTRMA
KIKKTDXTKCWRGCGATGTLIHCWWECKLVQPLWKIVWQFLLKLNIRLPYDPAIPLLGIYPREMXTYVHQKTCTRMFIAA
LFIIAKNWKQPKCPSTGEWINKLWYIHTMEYYTAIKRNELLIHATTWMNLXDIMLSERSQTQKSTYCMIPFI
>L1_RS1_gag#LINE/L1 1019-2035  [Cercopithecinae]
MGKKQGRKAGNSKNKSASPPAKERSSSPATDQSWTENDFDEMREEGFSPSNFSELKEELRTQRKETKNLEKKVEELMARV
INAEKVINEMKEMKTMTREIRDKCTSFSNRLDQLEERVSAIEDQMNEMKREEKPKEKRRKRNEQSLQEVWDYVKRPNLRL
IGVPESEGENGTKLENTLQDIIQENFPNLVGQANIQIQEIQRTPQRYSSRRATPRHIIARFTKVEMKEKILRAAREKGRV
THKGKPIRLTADLSAETLQARREWGPIFNILKEKNFKPRISYPAKLSFISEGEIKSFTDKQMLRDFVTTRPALQETLKEA
LNMERNNRYQPLQKHAKM
>L1-19_XT_gag#LINE/L1 149-1099  [Xenopus (silurana) tropicalis]
MGKSTHKVRPETAARLGQYARGANQDGARSPAPPTEQPAPADIADNQENPPISTQDILAAIATCQSSITATLTTKIEEVR
VEISLLKQDVQAIRERTGALEERISTLEDRTAPVPHELSQLQKLIKQTTDKLEDMENRQRRSNIRVVGLPERSEGPNPET
FAEQWLKDLLGAETFSPQFVVERAHRVPTRPLPAGAPPRPFLVKLLNYRDRDAALQMARRKGNLLYQGTRISLYPDYSAA
LQRQRSSFMGIKRRLRDMGITYSMIFPAKLRIVDGDRAQIFEHPDGATHWLETRPRTLNQQPARASPPRSPPKSPHN
>L1-17_XT_pol#LINE/L1 1941-5672  [Xenopus (silurana) tropicalis]
MATVKLISWNVRGLNDKVKRALVFNYLKSHNPHILMLQETHLIGKKVLALQRPWVSYAHHTTYSTYARGTSLLVRKGLPF
DILEVRSDKSGRYQIIACAIAGYLILLINIYIPPPFTDAVLQEIYTAATQLPPAPMCIMGDFNSCFNPTIDRLAATTATS
SKLANWAAAYNLVDAWRWKHPTTQEFSCYSATHQSLSRIDLALLSPELLPKVREIKFLPRAISDHAPLFLSLEILPEPTS
RQWRLNSLWLKIPEITXESEEAIKLYWLDNQHSASPLVLWDAFKAVMRGALKAAITKARSHSKDILLDLETAVSSYETAY
TTDPTPENHANFADALRRLNLHRINLTKKQLLHTASTMFAYGDKNGKPLAFLAKPLESTTAVPKILSSNGETLLTPIDIA
AEFNKFYASLYTSTAHYSNTDLHNYLNKIPLPKLSRMQSRYMDSPITQFDIAEAIMSLPASKSPGPDGFIVEWYRTHIRE
IVPKLHETLLYAFEEFSLPKSFSEATIVVIPKPGKDPTLCSSYRPISLLNIEIKILAKILAKRLAKVISTLVEPDQTGFM
PAKSTSFNLRRLFLNLQLPHENKGSRLVVSLDTAKAFDSIEWPYLWEVITRMGFGPSFVKWLKLMYSEPKAAVKVNGILS
TPFQLTRGTRQGCPLSPLLFALAIEPMAIQIRHSQQIKGLIYKTVEEKISLYADDTLLYLADPNGSFQTVLHIIKSFGTF
SGLQINWEKSIIFPLDGQIPTMTDPDCTLKIANSFKYLGITIHKEPAQFLEHNLRPLYNKFSETLKHWTKLPLTLIGRIN
ICKMIFLPKFLYQFSNTPCHIPKSFLLEIDRTQSAFIWGNKSPTLSRYTLNAPQDQLGLASPNYELYYLASQCAHVANWK
VFDPENPASILEALYFTSIESIHNALYRTRKDISPLLPVSDATKKAWDSMTLLTNKTGIISPDTPLWGNSNLPHFASFPE
AGSWAKLGVKRMDHLYTNGELHTLPLLQQIIPRPGLSDLRYAQITHLCGAQFQQPPXIQHLDLELLTAQTNKTKLLSNSY
KILIAKRYDPRPRVKLKWETSGVHLDPEDWDEVISNLYQPLISTRDKLIQFKIIHQTYLTPQKLHIMGKTDSANCPRCKA
HMANFMHLIWDCPVIQKFWHKVTEFMGTELNLPQILNPTTCILGLLDSLVHRRNTKLLMRLLLFYAKKTIALHWMGPSPP
TLRRWITLVNSQLDLYKLTYLARGCLAKFENIWSPWTDSPATIV
>L1-23_ACar_pol#LINE/L1 2353-6108  [Anolis carolinensis]
MSDFTQSIKCFSNNINGMNSSSKRKRLFNQLRKGSYSIIALQETHIAQKHVKYLKNDQLGQEYYSLDCKKKRGVVIYIDK
KFKSEESFKDKEGRIIAVKIDLGSEKILICNIYVPNGPKTKFIRLLRDKLNQSECDHIIMMGDFNGILDKNMDKTWKNES
KKKSSLLPRNFLALKQEFDLQDAWREYNPNQKDYTFFSNRHCIWSRIDMIWTSKSILTKINKIQILPRDLSDHCPLTMEI
NYRKYPRVWRLNDNLLKQEDDIKKLKLMTREFFLINDTPEVKPQIIWDTFKAVARGFFIQQAAIKNKRRNIELNNIKKEI
ELKEKDLKANPKNQKARRSLELLNKKKNSWELEKIAKQMKWAKQNFFENANKPGRWLARQIRKKKQSQHITKIRTNGESA
VRDVEIRDEFMKFYQKLYSSDNIEREEIVQYISKQGLQKISEEQRQNLNKEITEEEIQKAIKELEANKSPGPDGLIAGFY
KILQNDIIKFLKKIMNLALTSRNIPESWKEAEIIMIYKEGANSEEVQNYRPISLLNNDYKIFTKILANRFKEFLKDWISE
EQTGFLPNRSIRDNVRTIIDTIEYYETNQQKELGLLSLDAEKAFDKLNWDFFKILLQEMDVGWQFQNGIKAIYNEQRAKI
RVNGQTTGIFSISKGTRQGCPLSPLIFIFALEVLIRNLKQDKNLKGIKIDRQEFKVRAFADDIICIIDDPKHNIKGWLDK
IEEFGKLAGLKINKKKTKILTKNMTKNSKEELKEISGLETPPKIKYLGIWISAKNNQLLELNYITKWKEIRKDLDTWKNL
NLSLLGRVATIKMTILPKMLYLFQNIPIIRNNKIFKEWQRDVTRFIWNNKKPRIKYSTMITPKNKGGLGLPDLRLYHEAC
ALDWIKDWTNLQKVKILTLEGHDLRRGWHGYLWYNKVNVEKNFCNHFIRSSLIKVWKKYKNYLYTKTPLWLSPLEANQRR
LLGWTEWPTYKEILKKESIIQKSPQIKDLIEIQEINKNVSWYQYIQIKEAFKIDSRNGFTTENSFWDILIQRKNKIVSVI
YKKLLEWATAEVEITNSMIKWAQNIGRPIKLEEWEAIWTKKMKYTYAIELKENWLKVIHRWYLTPKKIGLMWKNVNNHCW
RCKEQVGSYFHMWWKCKKLTSYWKVVQTECNKILKSKFELKPEIFLLGLSDPKENLDANKDKLFTYFITAARIIIAKHWK
SETPPTKELWIDKIIEIRDMDRLTFLLKNNMDNKMKETDWTDLEDYLKDNYV
>L1-27_ACar_gag#LINE/L1 1376-2350  [Anolis carolinensis]
MSTLKLKMEEKKSTTRRGSISEEINLKDVMRELQKISESQKTLQEQMIDMRKELSDEFIEVKKEIKDLQKEMKEVKEDKQ
KMEKNQDKLQTRLEKLEVRNTRLEERQEMLERKELEYQIRMRNIIEEPKENLKQITTQILADLLQVQDEEMEDSIERVYR
VTTNFSKKNKVARDVVVQLEKRRTREEILKISKKNTIRFKGQKVTILKEQPASTMQKRKKYQFLTEELKRRQIRFRWERK
EGIMVTYKQERVWLTSEEKAKEFYKNLMKKENEPIPPDLASERERKRARTISPEKSYKVIAPQTPNLINLEEEEEEEGGG
GPSQH
>L1-26_XT_pol#LINE/L1 1796-5533  [Xenopus (silurana) tropicalis]
MSTVKIISWNVRGLNDKIKRALVFNYLKSYNPHILLLQETHLTGXKVLALRRPWVTYTHHTTYSSYARGTSFLVRKGLPI
ELIETRSDRSGRFQVVACAIAGNPLLIANLYIPPPFTDSVLQDMYKIILTLPPAPICIMGDFNNCLDPTADRLNPTTTHP
SRLAEWARAYGLVDAWRWKFPDVREFSCHSATHRTLSRIDLALVSPDLLPKIREIKYLPRAISDHSPLLLSLELLPNPQT
RRWHLSSFWLKNTEILAESANTINTYWQENQHTASPQIEWEAFKAVARGTLIAAIAKVRSNTKETLQALETATSNAETIF
TADPTPHNYREFATXLRHLNLHRLELTKKQLLHATATTFAYGDKNGKPLAFLAKAPENTTAVPKIISATGETLISPTDIA
TEFSNYYSSLYTSTAHYSNQELHDYLNTLPLPKLTRQQTKYVDSPITQYEIAEAILSLPPGKSPGPDGFIIEWYRTHIKE
IVPKLHETLMSSFESFSFPKSFYDATIVVIPKPGKDNTLCSSYRPISLLNMEIKILAKILAKRLIKVISTLVEPDQTGFM
PSKSTSFNLRRLFLNLQITHENPGSRLVVSLDTAKAFDSIEWLYLWEVLTRMNFGPTFTKWIKLMYREPKATIRVNGILS
PTITLTRGTRQGCPLSPLLFALAIEPMAIAIRHSQQVKGLIYKTVEEKISLYADDTLLYLADPHNSFTSAIQIVKRFGTF
SGLQINWEKSIIFPLDGQTPQMTDPECTLKIANNFKYLGIHINKDPGLFLQHNLYPLHNRFKDTLKFWTKLPLTLIGRIN
ICKMIFLPKFLYIFSNTPSHIPKKALQDIDRTQSEFIWGNKTPTLSRPTLNAPLDHLGLTSPNYELYYLASQNSHIANWK
VFDTENPASLLEALYATSIESLHNALYRSRKDISPLPPVLDATKRAWDTMTHLTNTTELLSPDTPLWGNSNLKHFATFPE
AETWAKLGIKRIDHLYTNGALNTLPQLRQAASRPDLSEFRYAQITHLCSAQFPTSPPQIQHTDLEELITQPTRQKLLSNT
YKHLISKRYDPRPRVKYKWEASGIHXEPDDWDEIIDNLYQPLVSVRDKLIQFKIIHQTYLTPQKLHTIGRLASPNCLRCK
ASSANFFHLIWDCPDIQKFWRQIVQFMATELSLPQVYNPTTCLLGLLDSLVPRTYTRCLMRLLFFYAKKTIAMHWMGPTP
PTLGKWISLINSQLQLYKLTYLARGCASKFEGIWSPWLESSATTTE
>L1-17_DR_gag#LINE/L1 154-1053 [Danio rerio]
MYTSRKQDSSPSTTPSGKKKMKLASTEANLTDVMAEALSKQQISLETTVQNAIRAAMEDVKSSLIELRQEVQSQTNTVRD
LISKVDKIQGETRQIKKDLNVCKTEQQNLTSKIAELEDRSRRNNVRLVGLPQGREGDNPIGFLQKMLPIWIPALRNKGPI
EIDRAHRIYGSGKSRTLLFRVLRYPDRQAILQGAREVMKTEAIRDQDHLLRFFADYSGFTSRKRQAFGSLQRELHALGIP
NFLIYPAVLRVNHGGNQQSFDSVKKAEQFLEEVRNGHASGVRRKLSFQGPSAPSESMDE
>L1-10_GM_gag#LINE/L1 50-2022 via tfasty with L1-8_GM_gag, 1 frameshift. [Glycine max]
SWRNNKDITSFYFSHFPDSVNETYLWNLFQEWGKVWEVFIPQSKNKQGQRYGFVRFKGVEDAGWLERQLDNKIYIEGKKL
FVNKPKFQRGGKREVGRTGGEVVRVRKESMNPMEPKQPRLNSTTSTSMKSYAEAVKHDHKMKEKEITMPLMGKNGPEAPD
ASVAIQTAKDKTSWLDNLWVGRLKNRGMFERAVDEVQEVVGMEVKVSYWGDDTIILTDMDEAKADKINLREQSNGETTIY
SIQKWTPEMKTEFRLIWIHIWGVPLEIWDAEHFQTLLSTFGEIVELDEETADRSRLDVARVLIRTKEKPIFSKSMVAMVN
DTEHHLFLREEVARPIGKRRWRPELETFPPSPFTTVMEDSDEDSTTCAPDGASSEYMRDGRRRRWTNAINLWRAXSEASS
DGDVSPHQREPPPAVGLPPCAARQEDFNGPLTEPLHGSGMEDRRISSLGQKQLPIEEKEDAGPKEDDTVKGADLRVLQHG
PEDITPVLCPAVNTNSNPPTKVTRGLNNSIQNRGPEGVMQDLGLNTKGPESNGEETAHNLKVYSRKKVGAGSKYSGHTKI
AEASRNDNKPSPLDLADSGPIHREDDVSGGVHAADVVPPQPQTCLSPIPSSSFTNALAEDEEDFHHEVARHLGLTFDGHF
SEDAAASPAVMGKDNIAS
>L1-9_Mad_gag#LINE/L1 395-2251  [Malus x domestica]
MEESGQGFYPFHSLIWGLGLYWXFNLGVGVLFLCTTGFDVGLTVRHKCGLCEDGVKVGSNKSQSIECWDGIYGSYEMLVG
SVKGAQPLLPPNGRYVQAYAFIAIVIALPLALNEDLRQIQDLRLLPASAHRVFSAHSKYSAASLGLSKVWSLLLMENPGV
EELVVHLDRSLDLSTMEIGVKLVGMALTQRPLNRWGIRNILNSAWKDLGEVGIKWVRENLFIISVXDQSMAKKILAQVPW
AVMKKNFVVKAWPPDLALEEVDMKTVPFWVQIRGVPLSLVSKENVTRLIRTAGVFLEMEDPAKARGFLRVRVLVNSENPL
VLGCWLKREVNRETWVEFRYERLQDFCYRCGRIDHVNTECSYAANMGGAEGYGDWIKAPPVRDFVEPVRPSRLGVGERRT
VGMVRGSDRPELRLQRPIHSEAPSRKDTSGVTAGEHGSHARDKKKWRRVQRQACPXSQIQVVVPQLRRQLRWECGGGSFP
PVLNQVVFQGGEGGHSVRIRDVSEAYSGTPPDXDLEGFTGTXVCNSRQXSSLLRHEVGGIKRGVEPSSMDLVPSPQKKTR
GPNPDADRQVIHDGTMEARDLWDHVEAVSGENESSVLAVCAGNLARGGGGWPSTAARSP
>L1-12_Mad_pol#LINE/L1 1599-5737 via tfasty with L1-3_Mad_pol, 2 frameshifts. [Malus x domestica]
MKILFWNARGMGNAPTKRVLRRMVQRHRPYLIGISEPFIQLNSIKLSFWRSLRLFPVAVNDRGDLQPNIWLLCDQAIQPS
ILLATAQQITISCTLDSVSCVITWVYAKTTIIERRQLWQDLRSIKSSFVNGPWLVLGDFNCVLGAHEKKGGLLPKTTSCS
DFQEMSSACDLLHLPTKGLPYTWTNRRGIKNQVEMRLDRCLGNFQWIDAWSLLECSTLPRISSDHCPLLVSFSKLTITPK
APFRFHSMWLDHQDFFSLVEDVWKSSNFYGCPMYVLGAKLRVLKSRIKVWNKLVFGDVNMNVDRAFDALDEIQKEISSLG
PSEERFTKEDNASLCVQKALIAQEKFYRDKSHIKWLSEGDNNTSFFHSMVKIRKLHQSLAVMRDGNRVLDNQMDISQHVV
TYFQDLFSADSSVTDTGLVARIIPKVVTATENESLLAIPTPDEIFETLKSMDHSSSPGPDGFGGSFYFRCWPIVGNDVVQ
AVQSFFSQGNILPHFNSNLMILIPKVDGANSVNHLRPIALANFSFKIITKILADRLSPIAARIVSPQQNAFTKGRSIVDP
IILTSECMNLLDRRCRGGNIAIKFDIRKAFDTLDWGFLLRVLDAFGFSAGFVDWIRSILTSAHLSVLINGSVEGFFPCSH
GVRQGDPLSPILFCLAEEVFSRGLTKMVEDDLIDTFSVPMGIAPPSHVLFADDIMVFMRGTKRSMRNLMRFVEEYSLNSG
QCINKLKSLVFLGKYASSRHAIIQKVLGVSQGNLPFTYLGVPIFQGRPKMIYFQAIADKIRCKLTAWKGSLLSQAGRLQL
INSVIQGILVYSFQIYAWPTNLLREVQGWIRNFFWSGDPLKRGMPLIAWSSCCKLKEEGGLGIRDLFESNRSLLLKRCWD
VISSSSPASDWLRNRFLKDNFHLLKSYKKSSVWLGLKQLWPSFYSSLQWSVGDGRKISFLYDNWLGTTLLSNIGEVDIIP
LNSKVKDFIQDAKWSLPIVFTSSFPHLSEKIMKTPLPIAHMDDALFWTGSSSGTVSAKEAFFFLSSHAPHKKWAKMVWHQ
SIQPRKSLVVWKACHGILLTDDLLQLRGVALASYCAFYHNVRESCDHFLLHCPQTVALWKWIFILFGKPYDPWQCIEDIF
YGSLVLSFPTSVWKLWLLVICSFFWWLWHERNKIRFENKSFSIVKSQHCLLRHWRESASTCFSSFTGCVSIPIFSMLRIS
SLSLDALSIVPMFWRPPPVGWIKINTDGPCKGNGQVGSGGVFRDSSGLFLGAFASSSSYPSAVVAEIVAVIEAIQIAWDK
KWHNIWLETDSMHVISLLSAHSMDVPWFLKVSWANCLWHIARLHLRFSHIFREGNCLADAFANFGAMNSSFTWWDLVPDF
ADASYRRDCVGLPFFRSSS
>L1-15_GM_pol#LINE/L1 1253-4588  [Glycine max]
MMISWNIRGLNKVGKTIEISSRLKSLNPTIIVLLETRVRKNKALTVRNKLNLNMKYLDNYDKHENGRIWFIWDDSKVMIK
HICSTSQLIHCGVYNPNGDFLHWCTAIYALNHLDDRRKLWKDIEDLRVQQADPWCLLGDFNNVLKAEDRIGGRDVTESEY
VDLREMMSRVGLYEMDTCGDFFTWTNKQADNTIYSRIDRFLGNLNWLQMHIDSTLKILAPSVSDHALMFLSCKDQSSRLR
GRFKYRNSLARLNGFHDEVKKNWNLGVHGNPMYKLWTKLSRLQSVLKNLSSPLNGLREKIDEARRNLQQAHEDLCRDRFN
VDNINRVKDRTSELLQLNELEDSDLRQKAKINWIRQGDGNNSYFHATIKGRYKHNAIRSLIKEDGSCITSHEDIEEEVLK
FYSALLGSSESNLAGLNIPAIRNGNTLNQFQRDMLIGPVSNAEIDTAIKGMDVNKTPGIDGYGVGFFKDAWSIVGSDVRE
AILDFFLRNRLHKGFNSSVVALIPKHKEAKMIKDFRPISCCSTVYKIISKVLTNRLSKVIDTLVGKNQAAFVPGQQLHDH
VLLAFELLRGYERKHGTPKCMLQIDIQKAYDTVHWDALEHILRELGFPDQFIKWIMIAVRSVTYVFNINGRFTRRLEARR
GIRQGDPISPLLFILVMEYLNRILSQLDKIPNFNYHSKCEKMKITNLCFADDLLLFSRGDIGSVQIMLDKFNTFLRSMGL
HVNPSKCNIYCGSVDINVKEQLLLISGFKEGKMPFRYLGIPLSSKKLNIKHYQVLIDKIVGRITHWSAGLLSYAGRVQLI
QSVIFATINFWMQCLPLPKFVIMRINAICRSFLWIGNSNISRKSPIAWEKVCSPKINGGLNIINLAIWNKISILKLLWNV
CNKSDNLWIKWLHTYYIRGQSIWSMVLKKSHSWIMSSMMKLRPLLLQYQSRMQDVFKMKKIYLALFEESEKMSWRTLMCN
NLARPRALFCLWQACHFRLASKDRLIKFGLNVDANCAFCSSMESHEHLFFGCIELKTIWTAVLNWLQIIHMPSTWSEELN
WITRKCKGKGWRAMLLKCAFTETIYHIWAYRNHRVFGGNVNNRKVEDSIINTIIYRVWDRKRYRRYIAELMT
>L1-13_STu_pol#LINE/L1 2084-5519 via tfasty with L1-15_STu_pol, 1 frameshift. [Solanum tuberosum]
MKVNIISWNVRGLNDARKRLLIKSLLHNWKADVFCFQETKLQGDIREIIKDLWSNRWVKYVQLEASGTRGGIILMWDSRL
WDGEICETGTYCITCKFVGKTQDLSWHMTGVYAPNSTLEREEVWWELGAVRGLFTGPWVVVGDFNTVRFPSEKKNCSRYN
KAMMDFSEFIEDMELVDLQLAGNKYTWKKGEGHDVAARLDRFLISEAWENSFRNIKQSVLHRVTSDHCPLILECGNWERS
NSFFKFENWWLQTENFKEKVKVWWESHHCRGRPDYILADKIKYLKGKLKEWSRTSQGNLGLQKQNILSQLTELEEIQDQR
QLSDDEIYLRTTLTVEFEENAKKEEVAWRQRSRAIWLKEGDKNTKFFHRTANCHKRYNNIDKLLVDGECTGDSLVIREEI
VKFYQKLYTESEIWRPQFNHRSGVVISEEDNLMLESQFSEAEIKECVMACARDKAPGPDGFTMAFFTNCWEIVSKEVVAA
VQNFHNQNIFERSFNATFIALIPKKLGAKELKDFRPISLIGSIYKIISKVLTERLKKVVSKLVDTHQMAFIKGRQIMDAI
VIANECVDVRQISKVPGILCKLDIEKAYDHLNWGFLWKTLENMGFGERWTAPRGFWHGGRPIHKYEALVTHRTTARIILI
LFEATSGLHINWGKSYIYPVNEVPRIDSLANILANILGGKIGELPTIYLGMPLGDKSKSKGIWNNVLEKCEKKLANWKSQ
YLSLGGRATLINSVLDALPTYMMSVYPMPASVRDRLDAIRRNFLWQGNCDPNKHKFHLVKWNEVLVSKKEGGLGTRNLKI
QNHSLLMKWLWRFASQEQSLWKDTIKARYGMETRWISNIATQPYGTGVWRTIRNLWPKLINKCTIKIGDGGKTLFWEEVW
AGQASLKDSFPDLFSLSLQKVATVKEMRDAQGWNLKFRRPLNDWEVNRMVELLNILERYKELSNSEDKLIWAPDTQGKFS
VGIAYRNSQRTHTQSSYWPWKMIWKVKVPFKVACFTWLLAKQAVLTQDNRMKKGLDLCSRCFFCECETETINHLFLHCKE
TVKLWQIFINKRGISWSMPGNIKEALACWNRDGNQSGHRERWKIVPACIWWTIWLERNQRCFENKSCSMEKMKLNCLALF
YFWCKHEYPHEDEDIPSMLESLRSS
>L1-27_XT_gag#LINE/L1 146-1066  [Xenopus (silurana) tropicalis]
MAPPKRQQDIRDKLEKVRRLDQDGGGNESPGTSAVSEAGNQDAISLTQTTELSTILEAIANCQTTVTAALTTTFTAKIDE
VKMDISLLRQDMQNIRARVTQTETRLSTAEDIITPMQTTVQQLDAKLTAIQAHADDQENRMRRSNIRLVGLPERAEGPQP
EAFLERLLITTFTREAFSAAFVVERAHRISPKPPVPGAPPRTFIAKMLNYRDRDTILRLARDKGPITFENTSISFYPDFS
IELQKRRAKFAPTKKRLQELKVPYAMLYPAKLRINHNGKAMFFTSPEDVHTWLETSNRAPTSPRGRE
>L1-65_XT_gag#LINE/L1 143-1137 via tfasty with L1-2_XT_gag, 1 frameshift and 1 stopcodon. [Xenopus (silurana) tropicalis]
MPPKPKKSASADLRHIFQHNQKDQDGGQPEEQIDGEEADPITKQDLQLLFSNIEKMVKAEHTKTTKELTTEITSLGTRVG
DLEKRLDDITDYTHQVDKDITTLYAQMEQIQYAQEDAENxSRRNNIRLRGIPETATDLEPLLTDMFQGLLPDDTSREARN
GSRALRPKPSPEERPRDVIVRMHFYRVKAAILEAVRPTGEVEVEGHKIALYPDIAPSTLARRREFKPLTELLRQHKITYR
WGYLFSLQVSHQNRKNHTEPKKQRKTPPHPPSPNRPTSGTKHKPPETAKQPQRGHMNQQRQKGKLIPQLQQPCFNSTCPE
SLRDTISPLNVV
>L1-49_XT_pol#LINE/L1 1825-5606 via tfasty with L1-12_DR_pol, 1 frameshift and 1 stopcodon. [Xenopus (silurana) tropicalis]
MAKLISLNVKGLNSIHKRYLTLKEIKQSGADIAFIQETHFSKEGPHKLYSKFYPTAYYASGPHKKAGVAILVHKDSLLTV
DQTLQDPKGHYLILIGNYADVPIMLINVYSPNTRQISFLRKVISKSHSFIAPFVIMGGDFNLTYSQTTDRSFPSKDHTAH
ILSTRFRQIMRQASLYDAWRITHPKDRQYTYYSPVYKNHSRIDYFFISHSCLRLQFSANIMPLTWSDHAPQLxISPNNPQ
ENTHWRLHETILHEPEVYKSTEAKLKEFFQLNEGSVNSLSTLWEAHKATIRGHFIALTSHRKKTARTQYDTLHKNLRDLE
AQYITQNTDNLLAQIIQTRTELATLKHKAVEKAIIWTKQTYYEKADKQHTLLARKLRDQKTQSRINAIQLPSGSLTHNPD
EIGAQFHDFYQKLYNLPKHTPNQGNQITLISDFLKNLNLPKLTDHDLHILNREIDSEELASTLKQMPNGKTPGPDGFPYK
YYKLFHHILSPYLLKLFNQFLQGTPIPNTSLMSHLSLLAKEGKDPTQCTNYRPIALLNSDLKLFSKVLANRLAPILPKLI
HKDQVGFIQGRQAGDNTRRAIDLIEILHRQKTPSLVLSLDAEKAFDRLNWPYLFSLLKHLNFTGPYLTALQKLYSTPTTY
LKLPGQSGKPISISNGTRQGCPLSPLLYALSIEPLAAAIRAHPDIKGVAAESGQHKIALFADDVLLTLTNPMISLPNLHQ
TLTQFSTFSGHKLNLNKSEALPLNIPQKPLEALKANFNYKWKTDSITYLGTHIPGTYGQIFDLNFKPLIRNTKTKLAEWA
KYPISWFGRIAALKMAILPKFLYLFETLPTPIPAKILKDIQASFHKFIWNSGRHRIPKSVVTTATRRGGLGVPNLQKYYE
ATHLRQLLAWSTWSPPTIWGQIESDTYKEANLNSIIWSKTGKMHLSPSMLPSTRLTLTIWARLKHKHNLTSDLSSNTIYL
RNPNFPPGMDPSFHKRWAELNLHTVKDLLEPRHHTVLPFQTLKDKAPQLNLRQFEYLQLQHFLTPYANFARANHPTTFET
IARRGLPQKGLISALYNILTTAPEGSQTRHKYMNKWDMILTQPLSEADWTNIWDNAKKMSTCVRQKEHIYKILMFCYHTP
EKLNKLFPDHPPNCWRGCGSQGSLQHIFWECPTIQPIWTEIANLLSRLFSREVPLDPTILLLGKPLPKMRKCGQTLANQI
LTATRLAIAAKWKSPIAPSMTEIINRVNSNRKFEYGIATLHNNTPQHLKIWDIWELHGLAT
>L1-65_XT_pol#LINE/L1 1441-4969 via tfasty with L1-16_DR_pol, 2 frameshifts and 1 stopcodon. [Xenopus (silurana) tropicalis]
TLKIATLNCKGLNTPVKRRLACHDLLATGAQILILTETHLIRQKEPKYWHKNIDRKFFSSTKDKKTKGVGVLVHRNCPLQ
ITRHQTDADGRILLINGTLPNTEVTLVAIYAPNEKQPEFFRQVDKFITQYRSGELIVAGDFNSVLIPSLDKSKHRSSTIP
TATKSLRSLIKSQSLMDTWRTLNPDSKDYTYYSPPHDSYSRIDLILTSSSLIELLTDTKIIPCSWSDHEIMLSTFTLNTI
RPRGEWKLNEWLLNFNPVTQEVTQSIPQYFSENQNGEVSEEIVWAAHKPVIRGILIKHAAHIRKQQLSKIKNLSAEILSL
ETSHKLNHDPNTLTSLINKKGELKQILIEKAEKSLRNSNRLFYEKGNKADTLLAKLLTNKNRPQMIQAIKTPTGTTTYKP
KNILNQFAQYYANLYSRNRTSPTLTTPPKLKEFLESCNLPKISPADSQKLQTEITGDEITAVIKNLKPKKAPGPDGFSML
YYKKFIKELLPHMQSLFNNLLQNKCKIPPDMLRANITVIPKPPKDPLYCQNYRPISLINNDVKIYAKILADRLAKIMPQL
IHPDQVGFIIGRDATDNIRRITHLLHHVEDLSIPSIFLSLDAEKAFDMVDWQFLKAVLENTGCHLNFSNAIMALYNHPTA
RVHSSGYYSDPFCIYNGTRQGCPMSPLLFALCIEPLAQRVRLNPNITGINIGKDTFKIALFADDTLLTLTHPQTSLPNLF
NEITNYAKLSGFRVNNSKSEAIAISLQHHHQKLQNLISLINSWEKQHISWLGRLHTLKMMIVPKILYLFRTLPIPINVTD
LEKLQKRMLTFLWNNKPHRINKRVIMRSTLQGGLNFPNLLNYWKAAQLAQMVKMHCSPAAVRWVALETQLLAPQSPRSIL
WIARNYRPQITLTNPILRHTMRLWDKLLVKHKPWISSDPSPFVPIVNNPDFPPGTDSQAFQWWTTNQYTDIGSLTPLGNL
LTWDDLKQKISNPQQRIFRYAQIKHFIQSKLGRSNRPKNNLxTAKLPSTPQTTWLYNELNSHKIPNKTKHMIRWEQRLNV
TIDDDQWQSILENIKKASINTIIKENAYKILYDWYLTPQKLHKIYKSDPTCYRGCGEIGDELHIWWTCPQITTLWKEVFR
FISQLLQKEIQPDPQLALLLNKPHHLTRAEFKLCSQICLATRCGIAKKCQHHHHSLK
>L1-95_Cis_pol#LINE/L1 1224-4988  [Ciona savignyi]
MSPFIVSQNVNGLGNTLKRKMIFNYLKQKKVDIALLQETHSCLHSEKRWEMEWGGKIVYSHGSSNSRGVAIMLSNRISAK
VNAWENDNDGRRLLVDMTIDQRKITIANVYGPNNDSPIFYEEYFKALNNFSNNDIILGGDFNLVLCDTMDKIGGATMHSN
KKAKRELLSLMREYNLQDVFRTRNPVLKEFTRVHSTPFTATRIDFFLISTSLASQVLHCDVTPSIKSDHCMVTLKLTNNP
TPRGRGYWKLNTSLLEDQRYVNSTKDVITELXLTNDLPDTSPHLLWDTLKCVVRGHTIQYSARKERAGRLKQTDLEKKIM
KINTEIQDGVQTNLEKRNTLQAELDDLVQTRTKAAMVRSRATWVEQGERNTKYFLNLERRNNERKNIHHLESNGKKITDR
NAILVELSSYYENLYNQHDDPTVPVESYINPLNLPRLNEEQKESCEKDKITEAECECVIRQLKQNKSPGPDGFPPGFYIT
FWKEIKNAFIKSANYAFRTGCLSSTQKSGIITLIPKPGKDPDRIENHRPITLLNTDYKIISKIINMRIKTVLPEIISTDQ
NGFIKGRYIGDNIRLLFDVIDYAENNNIPGTVISLDIFKAFDTLSWNFIFKALESYGFGKSLIKWVKVLYTDPQGFLINN
NFISPAFKIQRGVRQGDPLSPTLFILCMECFAQAIRKNPAVGGISVGDNEFKLSMFADDTLCFLNGNESSLIALLKEVET
FGVVSGCKVNRAKSSAFDLGPKLKSMRTTSHQYGLKWTTETLKYLGVLVPVEPNSRKTFELNFENAELKLSTITNIWSSR
GLSLLGKVTILKSLVIPTLLYKLSVLPVQIPKSFLTSIKRIMFKFIWGSKWERVSRQTLCCGITQGGINMLDIDCYFTAL
RSKWMFKLFDCNYKSPWKTLELESISLNTLICAIRSNLPTKDSVIKHYIHIRSLLTSLNSFRIFCRASLNDSSILSAPLW
LNKHVKFRRKALLTSELVEAGIWNYHQLLEKNGEFFRYDDLCDTYHVQASRQGFEKYNCLLAALPDSWNQIPNDPDMIPA
DYQEILEDHLKQHGRTTQAIYKYCCKENLKEPYKQQVRWTKELNGEVISKEEWIDIYTRNFTCTTETKLQSFQIKINLRA
IVTNDALFAFGLTESDRCTFCNHELETPLHMFCDCAQVQTFWENVNSWICAKFRVPFIINNAAKLFGTNFPENEKLINMV
LLCARFIIYRSRLQKENPNINMVLKYIENIQVIEKHIAYNNNRMLQYHLKWSSCA
>L1-93_Cis_pol#LINE/L1 957-4814  [Ciona savignyi]
MSLRIYSQNVRGLNNRNKRKVIFTYFKQRRADIVFLQETFSTNETERDFAFDWPGEIKMAHGTNKSRGVAILFKNNLNYQ
INSLKTNVNGRYICIDVTLQNRRVLLASIYGPNTDNPDFFQTFFCTLASFEDVDHVVVAGDFNVTLQDAIDRCGISTIYR
KKKSQSVIQESMEHMGLQDVFRIKHKNTRKYTRIQTNPFSATRIDYFLISDDLLQSTETTDITPGIKSDHSAIYLDISLS
AKTHGPGYWKLNTSLLDDENFQTLIHKTISEYIEHNDNNEVNPGVVWDALKCVLRGACIKYSAYKKSIQNKKERDLETKI
QHLNNQITSGDQSENTIAILRDAKAELDTLWNLKNKGYITRSRVKWTEEGEKCTKYFMNLEKRNKEKNAIHRLQCQGHVL
TDQRSIINGLRAYFEKLLSDTELNDDNYTDKAEDFICRAGCPRLSETNRDLCEEPITEDECWNALKSMPSNRSPGMDGFP
PEFYRMFWKSLSAIFLKSLTHAIDKGELSETQRVGLVTLILKKNKDPLLPESYRPITLLNTDYKIFSKVINIRIKAHLNT
LIGPEQNGFIPGRYIGDNIRLLFDVMDYADYANVPASILTLDMYKAFDTGRGGAGPRPPPPRPPPPRPGAPPRPPRIKWP
FIWNCLEAYGFGPYIKESVKTMYYRAKCRMTNNKFISEEFSISKGVRQGDPLSPTLFLLCMECLALTIKNNNKIGGISIN
EVPVKLSLLADDTMVFLDGKQQSFDELFRTVRAFGEVSGCTVNKRKSYAFHIGSRRSSGIKPHENEGLQWPLDHISYLGV
QIPIGKSSHTKELYQLNIPPLFAKIKVVLNIWSSRSLTLFGKIAVIKGLAIPTLTYKVSVLPITYKKDFFKKLNILLFHF
LWKSKWERVRRNVMCNDLADGGIRMIDIESYISAIRMKQIGQLFDHNFDTTWKRIEKNSISERKMVAYLGTTLRHNNQLL
PKIVPFKALRCCLDVWRATCSREQPPLFYSPLWLQKEIKFRNKPMYIPTFVEAGILEFYQLIDINDKYMDYDQLCLSHEI
NPNNRQLFMEYNKLKAAIPDNMNVSTSATPPVSIENHFTQETDHTTNNKLWYARCRKKKQEKPRNKQLAWEADLGLQNEL
NWENVYTSNYICTLENRLRSLQYKINMRALVTNIHLHSFNLKDSPNCNFCQNSPETYIHLFAQCKHLDKYWHEIESWICA
KTHLNLKLNTTDKTLGIQAALPKIKAFLNCVLLCARFVIYRAKVLESPAPNFNMFIEFVKEISITEYSIALHKNKINFHK
SKWNPM
>L1-39_XT_gag#LINE/L1 92-1183  [Xenopus (silurana) tropicalis]
MGKHSKNRDPQREEPKGNRLTESQKFLKKFLTPAEQDSDAHEGSSETGKPDGTDADSECESINTDQGTLSYLKTLPTKQD
FLDLATQIKTTLKEEVGDLKAEITALHSKTADIEHRAESVENTLESLLTVTESQSRAIQLLTRRVEDLDNRGRRCNLRVR
GLPESIDQPILKQTVQAIFNDILGQQPANDLQIERIHRALRPRGLPTEKPRDIICCLLSYTKKEEILTKARQRKVVKHGN
TEIAILQDLSWFTLQQRKLLKPLTDMLKERQILFRWGYPFSIQATIEGKTHTLTTPEDIHPFLQACKAENLDLTEWVKFV
QLPKPTSLQYKEPWMEVTTPKSKRRKMKLTPEKLPPQDKTKDTG
>L1-30_XT_pol#LINE/L1 1619-5359  [Xenopus (silurana) tropicalis]
MVKMLSWNVRGLNDQIKRRLVLDFLKKSGANILLLQETHLQGGRTMALKRPWVGWHYHAEFSTHSSGVAILITRNTPFRL
GKVEPDPKGRFIFLHGFLQAQEVVIANIYIPPPYQDTCLIHLVSFIAKFPHAAVIAMGDFNTLMDPVLDRQRRANTTAQE
ASSNLQSLADSAGLTEVWRHLHPNTRQYSCYSQSHTVLSRIDLAFVNQAALPRVRAAKYLARGISDHAPLEIHFREADQT
RKPRWSLNPAWLGILDNYQQIEAATREFISINEHTVGTLTFWDALKAYLRGLFNDEITAFKKQSRNAQHQLEFDILELEA
EVAATPLPGKFKQLEKAQERYAKYMRDKALAQYTFMKLNVMEYGERAGKLLAHLVRIQSTPNAITLLKTEQGSLTTDARV
IQQELTKFYSNLYTSTLDEANISKIDAFLDPLALPQLSPEYKAFLEEEVSLIEVQEAIDSFPNGKAAGADGLPVELYKRH
AKTLAPVLLKTYNEALREGQLPQSMYQAAIVLLPKAGKDPTLPESYRPISLLTADVKILAKLLANRLKKIIGSIIADDQL
GFMPGKTTAMNIRRLFLNLTIAHANSGERAIAALDIAKAFDTVEWPYLWKALDKFGFGTKFVNLVKLLYKSPTAFLRVGT
DEAPPFSLTRGTRQGCPLSPLLFAIAIEPFAAAVRQHPNIVGWISQNRTDKLQLYADDTLIYLGDRGQSLNALIELTEAF
GTVSGLKVSQAKSLLFLVDPQQRGPRPTPSPLPIANQFTYLGVEIALPITTYYDLNLGPMLEWMGTKFAAWGNLPIGPAG
RIQLIKMFIQPKIMYALWHTPTAPPKTFFSKLDTTMRSFIWGKGRSRLSLPHLKRSKTGGGMALPDFRVLYLAAQLSHLC
PLTPDGPCSALYSSWQELLPPYIAPWQAVLVQPSIPPHNLLVAAVRRAYVDARKTAGTCTIDPATPLWGNKVLGNLAXSP
PPRQWLEAGLTSIQDVWDMGVTAPFAFLRQHRSLPASQWLLYHRVHTTLKRLHKRSLLATLEDPLLSLIRTGHKKCKIST
LYKYIMEARQKLSTMKCREAWEEDLGPISDDQWKEVLASPKTVSINCRHEMLQLYLIHRAYYTPAKLHKIYPESSPLCLR
CQAETGTLLHTLWSCPLLTTYWATILNKLNAVTDSDITPSPKVCILGITSSLELNHGQKTLITKALFQARRQLTLNWKGQ
TAPSYDSWLNAMNEVCLQEKHSLCRKGKNVTXTNIWGSWEAHTARQS
>L1-28_XT_gag#LINE/L1 128-1066  [Xenopus (silurana) tropicalis]
MGKHSQRGKADQSQKLDKYLQPPQPEQDHADDEGLRPASPNSLPSSQNPGTLEPTNAELLAAINNTHSSTTAQLESIKVD
TSLLRQDLQALRERTTEAEARISTLEDATAPLPGQLTTLKQQIATLTARAEDLENRNRRNNLRLVGLPEGSEGKTPETFA
ETWLKQTLGEDTFSKIFVIERAHRVPTRALPPGAPPRPLIMRFLNYRDRDAAMVAARRKGQLTFNGANISLYPDYSQAIQ
KLRASYQGVKRRLRAEGIIYSVLYPAKLRIVHEERTQFFVTAEDADRWLNTQRFPPRNSPRHNGDVPRREAPE
>L1-31_XT_pol#LINE/L1 1596-5348  [Xenopus (silurana) tropicalis]
MLGSPLLTMAXNLKLISWNARGLNDPIKRRTALTYAKKQNPDILFXQETHLTGSAILALKKPWVGWSYHSTYSVYTGGVS
TLINKRVIFTLLNLKTDHKGRYVFIHCKIFSRECILANIYIPPPFSEEVLIELTKFTLQYPNATILTAGDFNTTPNPIKD
RWKRDGTSGTGDNHKFNXWLHSLDLIDTWRVFHPSAQQYSCYSKSHLSLSRIDLILTPKTLLPTIQSIEFLPRGISDHAP
LEMVWGWGCAPGTRSWRLNPTWITIVGKKEDIESTLQEYFVNNPPPEETPLSWDAFKAYLRGVYISEINIIKSKTKTTEI
HLKAQITQAEQAVIANPTPHTHLNLQTAQEEYQKFLEAKTKKQHLFLKYNIFEQGARTGKMLARLARSETSPPIISSIRN
TSGQIIEDPRAISKVFGTFYEQLYQTQLNMPTHQLSHYLDQIQLPTLKREQKEALEADITITEVLEAITTLSSGKSPGKD
GLPIEIYKTYADTLAPQLLQVYTAALTRGELTPSMREASIIVLPKPGKDLLECGSYRPISLLNCDIKILAKILARRLQQV
IDSLIAPDQTGFMPHKSTAINLRRLYTNLAIEHDNGGQRALAMLDIAKAFDTVEWPFLWRVMAKMGFGPHYLALTKLLYS
NPLASVTVNGIPSPHFKLTRGTRQGCPLSPFLFAIAIEPLAAIIRNDPGIIGWKIGPLQEKIQLYADDSLIYLADCTTSL
NKLAHTLQEFGDHSGLRVNLTKSTLFLVDKQKSNPEHNQHSLIVTPEFKYLGIKVSLPISTYWEMNILPLLGMMETKFKQ
WAGLPLSPQGRISLIKMTILPKVLYILTQAPIRXPKSFFKKLDKLMGPFIWGTGRRRLKLDSLKKAANSGGASLPDFELY
YLAAQLAHAKPWFTPKPTCPSSKLLMALNSPERPILQTMLKTPPDKQQNTTHPIISLTRTIWSRAEAICTHHAKHPDTPI
WNNKALNEFTHIEAGRIWNNKGVQLLQHLIHDNSLKPFDRLQREYEIPDTQWLTYRQIQHAYHSDPPKVGKSPFCKILEV
QTSQHLISTLYSTLRFCKYEKTNAGLFRAWQTDIPSLTDDEWLDALEAPGFVSPNANHKMIQKLILHRAYFTPLRLHRMN
PQISPNCTRCDLAPGTFIHMMWECNKLQVYWRKVFTTIVETTRVQLQPSPELAILGACDDSMGNKGQLTVIRQGLFQARK
CITHHWKDVHPPTHQTWLNQMQKYLDCMQYLYTKKATPEIYEKTWGTWPPP
>L1-38_XT_pol#LINE/L1 1400-5171 via tfasty with L1-12_DR_pol, 1 frameshift. [Xenopus (silurana) tropicalis]
MSLKCISHNAKGLNSPTKRSLAFRHYNKLGADVLFLQETHFSITSIPKYFHHSYSTFYTACAEKKHRGVAIGIHKKLNFQ
TTTIKSDPEGRFLILVGQIQDTPITLATVYGPNEGQQTYYRDFFSILEEKCRGPLILAGDFNEVPHPNIDRQPNPVSKRN
RKNKHYFAKLMDKYLLVDAWREQHPFKKDFTFFSAPHNSHSRIDMFLIHKLISPKISQTKILSCPWSDHSIITLTLASLA
QKPSNITWRLDDSLLSNPQHQQTIESELESYFSRNNTPDIASPTLWAAHKAYIRGILIQIKAKTNKERTKTINQLNNKMQ
RLEDQLKTNPNNTKSKKELEKTKTELNLLLTEKEITKLQWTKQKFYRKANKADTMMARQLSNKFNRSPFTQIKLKDGSLT
ANPERITQEFATYYHTLYQKHKDPSPTLLQQFLNQANLPLLTPQQKTLMSEPISIEEIKVAIKQLKVNKSPGPDGFTGKY
YKLFAPKLIPWLHLLFNDIMTNKGNFSRDDLQAQIAVIPKPEKDHTNCKNFRPISILNLDIKILAKIIASRLNQFLGQLI
HKDQSGFIPKRQVTDNIRKIINLIHIAKIKDVPSMLLSLDLEKAFDSVSWHYLYQVLSAYNFPIPFLSVVKALYNSPTAK
VSHMGFQSDAFKIGRGTRQGCPLSPLLFALALEPLAQQLRLNKKISGITTGDSEYKCTMYADDIIMTMSNPMTSLPYLYD
TLSNFAKISGLKINPSKSEALSINLQPHLKKLLEINFEFKWQTKTIRYLGVLISADYRSLAKENYPKIEQKILNMVKSWE
RLKLSWLGRVTALKMSALPLLLYLFRTLPTSPPKDYIEKMQKTFTKFVWNGKRPRINRATACRNRHKGGLGIPNLKGYYI
AAQLSQLIPWHLPEDKPIWVKIEQDSLPNISLRNILWTTHSTLQTQTNPIITHLVRLWDRSKEPYKLCSPHKPVASLINN
PDFDPGQSSGALHWWKQSNLDTIHSLTSSNILLPWSRLQDNYKIPQHEWLHYHQVVSYIRSHHKGKQFPLPTAFERLCLQ
LTTLKGALSYLYDTATHLTPIKELKFVQTWESTLRLCFDEDTWRDIFKNTVTCSINVLTQETSQKVLHQWYLVPTKVSKW
YPSASPSCFRACNQQGTFMHTWWDCPVAVRYWIRIYTLITAVTGLSLRKSPAEALLNKNIPSGNKYLRKLITHIFSAAKQ
TIAKAWKSATLDINSVKTRLDNMLIMERLTSISTGQLKVHNKIWAPWMTYRNISLHP
>L1-32_XT_pol#LINE/L1 1581-5360  [Xenopus (silurana) tropicalis]
MSSNLIKLISWNVRGMNSKYKRASIFNYLTKKDPPAIICLQETHLEGQRILALKKYWVAHSFHSTYSSYARGVSILIRKG
LPFVCLAVKSDPQGRFFAIHCKIYEVTLTLCSLYVPPPLTLGTLNAVMNKLLELPVAPLCIIGDFNMVMNPQLDKIPIGQ
TAHSTLSRWSEAMMLKDIWRLKHPRDKAHSCHSVTHKTLTRIDLALVSQDFTPLVVGAVYLPRVLSDHSPLQLTLDTQAP
TQSRIWRLSPIWLKIPNILEASNEATIQYWEENANSTTPDILWDASKAVIRGKLIQAIKRHRKQRQEEVDLLEANLMQAQ
SDYTAQPTDNTYQAIQSAEQALTLKQVELTKKQLLYTQQRIFDQGEKNSKLLARLAKLPTETVTVARIATTDGRNITNPK
AIADEFAVYYANLYTSRGGATTDQIRGYLSTIPFPTLDNHQSDYLNAPITKSELLQALQALPPQKTPGPDGYPAEWYRAH
AEHIIPHLLDTLNEAKDRDKLPQSMREAIIVVIPKAGGDPSQCGAYRPISLLNVDVKVLAKVLATRLSKVITTLIEPDQA
GFMPQKAPDINIRRLYTNLQVTHENFGNRAILSIDWEKAFDSVEWTYLWELLPHYNIGREFIDWLKRLYKEPTARVRVNG
ILSSTITMHRGTRQGCPLSPLLFALAVEPLAIAVRKAANYKGLKLREVGEKISLYADDVLLYLQDAGPSLQIAMELIQTY
GTHSGLKVNWRKSVIFPIDQPATPIRPPHPDLQLADSFKYLGIHIHKDLSQYIALNLEPIIQHYARTAEVWQRLPLTLWG
RVTLFKMIFLPKFLYVLRNTPIYLPKKLFLRIDKITTSFIWNNKTPRIAKETLCAPQERGGLGLPNLQTYYIASQAAYIH
WWLAPDAENPNMALQATILGSVEAMENAPYRTQGDIQHTTPIIKLTHRLWLMALRKLGIDPPLLSPRLPLWNNSNLIHLT
QLPQFQIWPIAGIKRLKDILEENLFPTYTDLRSRPLLTDVKLYQYLQLREAFVDQFRETSLVYENYPIENLLTQECPPKL
VSRLYSLLNSASQAPFHRTYLKWRSMLDDLTEEQWEEVTENLYHFLISSRDRLIQYKFLMQIYYTPVRLKEIGRRETDKC
HRCQTDQANFLHMIWNCPMIQDFWKDITTHMSSHLAYPPLLSPHACLLGILEDQVGSIASRLFARSLLYYARKCIILRWM
GPKPPRKKQWIKLINGALPSIKLTYLARGCPAKFDKVWQPWLDVEGDPLPTTADTPNLPD
>Tx1-3_BF_pol#LINE/L1-Tx1 1315-4977  [Branchiostoma floridae]
MDSDTTTQCYLTSELTCLSLNVRGLNDQVKRRTVFRWLHQQRVDVVFLQETFSNAKIERVWRAEWGGTILYSHGTNHSKG
VAILVNPRKSCEIINCKNDTNGRLLIVNAVIAGEQVCFVNLYAPNEITEQYMFFQDIRTKLRENSTCHTIMAGDFNCSLT
DMDKRGGRPVKEKLRTIQAINLLTKGQDLIDIWREKNPKERRYTWRDANQGIMCRLDYIFVSDSLKARCGSANIIHAPSP
DHSAVTVHFEPQNACKRGPGFWRFNNTLLNDKTYTDTMKLKIDDARAKYSEIEDKRLLWDLIKMEIRSFTMYYSKMKAKE
RKKDELSAEKQTNSYIQQYESNPSQENWCKYNRAKEKLDEIRHLKVKGSIIRSRCRWHEEGEKSTKYFLNLEKRNYEQKC
INELLTENNSVITDPGKILEQGKQFFESLYTSKETNPHDPKFEEFFTNNEINKLTGEQRDNCEGNITVKEALTALKQMAK
KKNRSPGTDGLSFEFLLYFWDKIKNEIVDSFNTALEEGELAISQKRGIIRLLPKQGDCRKLENWRPIALLNTDYKILTKC
LALRLEPVLPSIIHENQTGYVKGRYIGTNIRRMWDIIQETERTQTPGIALFVDFRKAFDTLEWNYLEKALMTFEFGPIFR
RWVSVLYKNSCSCVINNGFTSDWFTLKRGVRQGDPLSGLLFILGLELLACKLRSDTSIVGITINNQITNNLMYADDTTIF
ANSVTSARRALATIETFGQFSGLQASKKKTEAMWIGGYKERKDKPLDVHWPDKPIKCLGVHFSYDKAKCEELDFNDKLTK
MDNILKVWSGRNLTLIGRILIYKCLAVSKLIYNCSVLTTPPNFERKVNAIGLNFVWNHKPHKVKFSTLIAEKDKGGLKMM
DFASMVKALRASWVGRICTTQALESHFLQYGGAFLFKCNFSIKTLKLGNMPTFYIKILEAWEELNSHRPQTSMEIKQEFL
WNNQYILQERKSVFWKEMYLCGIRTIQNIIDDGGNILTPKAITREFGFEFNASDILRYYGLCSSIPPGWKKVLTDPINSK
PDVRSTLSYKCKQLYQLFVNKIVQPPSKQDEITRCLQDEEDIKKVYMLPYICSQETKMQYFQYRIIHSFLTTNAYLKKIR
IKDSDQCPYCEEKQTIVHLFAECHTVKTFWKDFTDWWKKENQHPVGLTNIEIIYGHLSHIENNKTLNRCILQAKYYLFCT
AISKAYPTFHAVKHRILEYA
>Tx1-3_AMi_gag#LINE/L1-Tx1 558-2438 Tx1-1_Crp_gag near-identical.[Crocodylidae]
MAAPTPSSWHEDASQNLPITHGLRVHTPPYVGVEVCVDALASLLGQRNIRYAGRVNTVPMIYLSDSTLVNRVCAEGLDIA
GAHYFVTPLDTPAVRVVISNVPPHVTDRELAKELEPYGVLTSPFRRLTIGSKNPKLRHVLSFRRQVFMLLREGPQSLPQS
LSLMFDGRRFVIYFSFGETTCFQCGSSSHLAAQCPRGRSAGTSVTTAAPTDGASTSGTQAPPSEAGSFSRPPSTPVPSEG
AGVSGVRAPSSGGAGTRPQPSPPPIPPTVPTPTGTETPPGGEADASTSPLPALTAPIEVAGVVSDCGAKALSDDGAQASS
RLPSTAALSEVDGPGEAGQKQSGPSSMKGGPPATKKKNKEKKVKGTTQDSPSPLRPSSAGAGGGPAGEPGPAPAVMSVTL
LTGDGGGLEVGEAKAGVTDPSPVSQLPEVGGSKSYAQCLSSGDLTQGAAEESADLLVTSQATELDEEASEMEIQLSECRK
RPREQDGLSPPKKVGIALREPDLDLDDQRRLMGLDIEGVDAAFVGELPTRVQPRRASVGNVQPMLADPPWVGPDYGGLLT
FLKQTKGQKNVAGRITQWCADPKVFIKAARAAAKLMQQDLGTRQMAYRLEKLAQRVRDEWGLAGSLE
>Tx1-4_BF_gag#LINE/L1-Tx1 28-1674  [Branchiostoma floridae]
MPQVTPSAYSKRRTASITFLTKQESDFDDVLELLRTHNINIRTEVDTIQSSGKNKSEVVFKTNNALNKWAPFLAADNDID
VELYGNGVTVVTVMGASIELDDNYVRHQLKEYGEIKDGRYLTYASRGYPEIKTGTRQYKIALKKHIPNSIRVGGDNVAVR
YNGQPRMCHRCGGQDHFVAACTVDKCSRCHELGHKAGDCTEQIRCNNCKGEGHTFRSCPLSFANKLSMTTAWGGTTSWTK
PTETVSQEKSGGKEAKQNQAKNGSEAKQGGSGGTQSHKKDPPLIESVSGESEGEESDKEVMGEEETIPHKVVGGSSAANS
GDKNKGVEVKPDGETSPLKEDDVSKAEAVVKTPARAVTPPSESPPKGSHEEGFWDLGSLPEDGANKMPEDEEEVEEMEVD
KPTTTFKLALSESLAEKLSGDLGPGFTIGDGEEGPELTINLAEPLVIDDSDREENAPKRPHQSDPSESDDSDTSAKNPKE
KLERKKVKKDPDNTAKFGSQIDMFASSGESQSEEPKNGSKTKKPGALKGAGNKGGGNKGGKTSRGKPR
>Tx1-5_BF_gag#LINE/L1-Tx1 19-1647  [Branchiostoma floridae]
MSKLARYQSVKITFLELHHHQLKDVIDLLTKHGVKSMEIQSVQSKPNNDTTEVTFTTKAVLQRVVPSLSSDRSIDVETFG
TGITVVTARGIPFEFEDNYIRLRLKEYGMVLDTKYLTYANLGFPHIYTGTRQYRMKIQKHLPNTVRLGSDIVSFNYAGQP
RSCHRCGSTAHFVADCPETKCGKCWELGHVAKDCNNQMKCSVCLEAGHSARTCHKSFASVVKPSSSWATQAKPAPGTSNA
GPGVPKTKLVSSVDSESEESGQEDMLEEETTPHKLVGGPTAANPGSETKSPLKVVAADKARKSKGDEGKSDDKVEEEVAK
SDDKTSPPQVVKTPVRAVTPPSESPPKGEEGFWDLGSLPEDGANKMPEDEEEVEEMEIDKPTTTFKLALSASLAEELSKN
LTSPGFTIGEGEHGPELTMNLDEPLIIDESDREENAPKRPHQSDPSDSDDSDTSAKNPKGKLTGKKVKKDSENTTKFGSQ
IDLFASSGETQSKEPPNSSKAKKSGLMAGAIKGAGNKGGGNKGAGNKGAGNKGGKTSNVKPR
>Tx1-4_BF_pol#LINE/L1-Tx1 1675-5181  [Branchiostoma floridae]
DSLTDLKSMSMDLRILTLNVNGMKEKLKRSQVFDFCRNLKVDVACLQECHISSLADKSSWSRQWGNKTVWSLGTNSARGT
GILMSDKWSIVSSKVDMDGRIVSVLISDGSSRYNVVNVYAPNTARDRAVLFASLHEYMFPNATLIIAGDFNCVLDPALDR
HTTSSASPGLNTQDVIELRSLCTDLGLKDTWRDEHPTLLEYTWRSPSNQTRTRLDRIYVSDDPSTKARIVSCPFSDHDAV
VTDIEPTHPVQQGRGVWKCNVKTLSDPLFVQDLEEQYRGWQNQKSDHSSMREWWDEVKVKIRDLVVTHSKRRAKGARLVQ
KGLEKEVDMLRSRLNCGDCSTTTLREYEEAKDKANKWVRDQLEGQRLRSRIKHFEEGEKPTRFFFRSERDEGKKKLIREI
RKNDGDITSETDEITEVFRDFYAKLFTKDQLDSQDRDYFLSKLEETLPEEVSDQLERPISAEELLTALKSMANSKTPGSD
GLPKEFYLQFWDLLGPDMLEVFKEGLQDGLLAPSQRQGIITLLEKKGDQLNPANKRPISLLNVDYKILSKVLANRLKAVI
GLVVHTDQSCGIPGRSISDSVCLLRDIAAYVNDKDLPCVFLALDQEKAFDRVDHDFMVSILERLGFGPTFRQYIATLYSE
VSSKVLVNGSLSSSIPVERGVRQGCPLSPLLYVLCIEPLAAAIRADTQIKGVHLPGGSGRDTKIVQYADDNTVVLTDSRS
IDRTFELISKYESGTGAKLNLGKTVALWLGCWRGRQDQPYPIGGWSSSHLKILGSPVGNQNLAEEAWLQRFAKFKATLEK
WKDRKLTLFGKVLVINSLAAATLWYVAPVYPLSRSVQRKIEKLMFEFLWDGKTELVNRKTLYLSKEEGGLGLVCIPLKAK
ALLLKSVKKALTDPEAPTSRYAHYWLGLSLRQLDPESWNNNIPHSMERPPHFESIFGHLKDLETKDVQIDWKSCTTKSLY
DDLLKAENIVPRCVQNNPTVRWKDVWKAIHNPLIQKWDRMLAWHAAHNSLKTRQKLKSWRGFVDSDVCPRRGCNMVESVT
HLFWECPVVAEVWEWVEGLIYRRILPQFNMPGAFAVYSLVFQSMPTKTRLVLETLAAMTRSLLWKSRCEVIFEKKHFTGQ
ELITRLQKMISERLDFEFARLSPAAFYDTWVEGHTWIDFDISHIVVHL
>Tx1-2_XT_pol#LINE/L1-Tx1 1221-4613  [Xenopus (silurana) tropicalis]
MAVTISSLNVRCVGSKAKRAAVLDYLKSQKGDIFCLQECGLKFSPLASEWGEGESIWSPSAENRNVGVGVLVKGNKTKVL
SYSVLEPGRLLLVNLKYFDISFRLFNVYAPVDKNARVELFEKMMFNFPGRGPVVIAGDFNCVLSKEDREGNLDFSLDVSS
KMLSGIMQDFHLKDAFVSGGDVNDRFSWFSDAGVSKSRIDMFLISSDIQVNKYVSFNNIFSDHRLLQCELLFGKNHVFGK
GCWKLNTSLLGDEQIKMEFKKMYSVWQNRKENFGDILKWWDWVKNQIRVFFIRKGVMRAKREKEKYESLNFRLQYLYKLR
NLGMDVTKELVETKQDIKKCIAERGKKIIFQAKVEHLENGEKCSRFFFKKVFSGRECFTAVLGPDGQEIKDKEGIMREIE
DFYTNLYSEKEREESAQNDIIDLLDNSLDECDREVLNKDISEGELEIVLQSMKNNKSPGVDGLPYEFYKIMWDVIKKDFF
ELCNFVFRFGVVAESTKEGLIVLLFKKGEKKDIRNWRPITLLNSDYKIIAKMVANRLKGLIDKVIGEEQVCGVPERQIHQ
NLVFIRDIIWDSKERNVPLVLANIDFEKAYDRLAHDFLFRVLEKMGIAGKLLDLIKALYRDIYSRVRVNNFIGGKIAVKS
GVRQGCPLSPIAFICAIEPLIQAIRKDKVVKGYMVPGGMGRDVKVLGYMDDIVLICPSLSSFNRAKLHIKLFCLASAFKV
NWSKSTFKNFGRKLGIVEKELKEEKVGMTILGIFFTDDLKGKECWEEVGKRIVRKLNFWRLRDLSLGGKVLVIKSVILPL
ILYVSHVFPPSVRIITKIERLLFLFFWNASMERLKRETIKKEVAKGGFDFPRIEEFVFIHYFTLCIKILSRETFVANMMT
FLAGYMFKRCGVVLWDNKKPFCFCVPQFYLVIQVKLEKFSLKDVPLGEWKKKKKIMQILKDRDQQCELSLLNNMQTKEVW
SKLKHVTVLGKQKDVVWMGLHNALPTRVFLRERNLIQFDKCMREGCAGVEDTTHVLWNCNFARETWKKCGRLIKEITGLQ
SLSFMVIAFGLTSLGKVQSKLLWIILSCVKQVLWESRNLLVFKKEDLSVRQAVNLVLSRLYVYYWMEVRKKGEIDAEGLW
KTKKWVELVS
>L1-8_CQ_pol#LINE/L1-Tx1 1383-4577  [Culex quinquefasciatus]
MNHPTMSYNICTINTNAIANNNKIESLRSFIRQTDADVVLLQEVENSNLTIPGFEVLTNVDDSKRGTAIAIKANIPYSNV
QRSLDSRIITVKLGTSTTVCNIYAPSGTQNVSSRENLFKNSLPFYLQNSAEHLVLGGDFNSVIRNEDSTGTSNFSISFKT
LVGNLDLHDTWSSLNRNQSAFSFVRSNAASRLDRIYVSSSLVSHLRVSEYLVTSFSDHKAFKVRCCLPDLRVLQGRGYWS
IRSHILTNENVEEFGLRWNRWLRERRNYNSWVSWWIKCAKPKIRSFFKWKTNEKFRQFNANNEHLYRQLKEAYEGLLGNP
SRREDINRIKSQMLQIQRNFSKVYERLNDQTIGGERISGFQLGERTRRKKTSFIKSIQHQNRQLTDPALIENHVFEYFKS
LYSKQPVEPNVNFPSNRSIPAGSDSNDRLMDEITTSEIFFAVKSSASRKSPGCDGIPKEFYLKTFEIIHPQLNLILNEML
QGNISEELVEGVIVLCKKKTNESSIKSYRPISLLNFDYKLLSRILKQRLEKVMVENNLVNSEQKCSNSERIIFEAVQAIK
DRIVEINCTNRAGRLISFDLDHAFDRVDRGFLLGVMRSMGFNERFLLLLERIMSASYSRLLVNGKLTQKFPIERSVRQGD
PLSMHLFVLYLHPLLVKLLSLCNHPSDLVVAYADDISVIVRDDCILDTLKQAFVEFGECSGAVLNLHKTLGMNIGRNRSR
EIPPWPSMAESLKILGVTFFNSLKETTKHNWNELVRKTSRLMWLYKPRSLTLVQRVVVVNTFVTSRLWYLASVLSITNVM
IARITSQIGYFIWAQYPHRIAMEQLALPVCKGGLNLHLPVHKCKALLVSRYIADREYTPFARNFEQQMSNPPNVMGIPAL
YPCLKVVAKLLPYIPTNLTANPSASTLHEYYRENLRVPKVMEENPNIDWNRVWRNTRSKALNSAERSTYYLLVNGKIPHA
ALMFRQNRAMNPNCEHCPNSIEDLDHKFATCSRVRHLWRHLRLKLGTILGRRIQIKNFLLPELKHCEVRSKQKALKTFIN
YVNFILDPKSSLSITALDFHLDCNV
>L1-6_CQ_gag#LINE/L1-Tx1 122-1132  [Culex quinquefasciatus]
MNEMRGYRKNTVVIDFGPVPKKPTITQIRKFAFEQLKLDITQIRNLQLSMTKSFVYIEMSPEINAEELVAEFDMKLTMTS
EDGVQTPIPLHTADGATEVKIHDLPPYMPTQIIAQHLAEFGEILSITDELWKEHFPGVPTGTRIVRMRIRKPIPSYVNIG
EEVGYVRYRNQRPTCRHCSRYLHVGQKCSDVKKAITGSVNSRLTLADIVSGVNPSTEEKQNTETLPAPPPLMPRPSLPIE
TLNEEQLLADEEAPAIPEVVPEQESKEDSTFPELDFAGDENYEISSDEDAKMQTEEXESEADSAEDXTAGKKRPARPKPQ
KKSKRLSGSKSKSGSSK
>L1-9_CQ_pol#LINE/L1-Tx1 751-3921 via tfasty with L1-3_CQ_pol, 1 stopcodon. [Culex quinquefasciatus]
MANYNSYNIATININTITNTTKIDALRTFTRTMNLDIICLQEVENEQLTLPGYNVICNVDHARRGTAIALKEHIRYSHVE
KSLDGRLIALQINDTTLCNIYAPSGTAQRADRERFFNNTLAYYLRRRTSHTVLMGDFNCVLRQCDATGYNLSPALQTAVR
QLQLFDVWEQLQPQAQGYTYISHNSASRLDRIYVTQGLRNQLRNSDTHVCSFTNHKAVTARICLPHLGHETGRGYWSLRP
HLLTPENIAEFRNRWQYWTRQRRNFPSWMRWWLEFAKPQIKKFFRWKAKEAYDEFNGKHQRLYAQLRAAYDQYYQNPVAL
VAINRIKGEMLTLQRQFSQMCVRVNETYVAGEPLSMFQLGERRKKTTTITQLHAEQGELIDGSPAVEEHLHRYFSELYAE
VHEEREAVDEFQCCQIIPNADPTNEACTREITTADILAAIKSSAPRKSPGPDGIPKEFYQWLFDVIHREINLVLNEALRG
DFPPEFVEGVVVLVKKKGNSNTARSYRPISLLNVDYKIFSRMLKARLDDVMKLHGILSDGQKCSNAERNIFQATLxIKDR
LAQLISRREKAKIISYDLDHAFDRVRTAFLHQTMRSLGFDRRFVDLLACIADRSTSRLLVNGHLSPAFPIQRSVRQGDPI
SMHLFVLYLHPLVSRLERVCGDDLLVAYADDISVISSSVEKIQRMGELFSNFEIVSGARLNMEKTVSIDVGLSDGAPLLV
PGLRTEIKIKILGVIYTNSIRAMVKLNWDAAVSRFAQQVYLHSMRTLTLLQKVALLNTFITSRIWYLSSTLSPCAYHVAK
ITATMGTYLWKGLPARVAIQQLARSRDQGGLQLPALKSRALLVGRHLQETGSIPFYSSFIAQVNPNPPADCPCLKVILQN
ISLLPNQVQQNPSSSLIHSFFINQTETPRIVRLNPTADWSRIWTNISTRNISSAVRSDLYLLVNGKTEHRQLMHTIGRAD
GASCLHCGALAETLEHKFSTCPRVAAAWVHLKRVAAPILQRMRALTINDVLKPELHNIGPSRRRKFLQLINRYIHFIDTV
NGRIDVNALDFHLNCEV
>Tx1-1_NV_gag#LINE/L1-Tx1 215-1483 [Nematostella vectensis]
MVPPTENDMDTPTDTPTDTPKATPTGKTMSYREAALQQRKPTVFRSFAALRTVRLRYDSTPVSAAEVLRAFLGTESADIV
GTAQVVSGLEVTFKTEQSAVLAASRGLDVGGRHYQLAPVSVRRTAVSVFVPVEFPDDTFRDLMTRYGDLHSISRLHHKEP
DLAAFENGCRLVLYDKLLRDLPARLTTNGASLSFKYTGQPQSCLRCSEIGHGVKECTKPRRRPHRRRREELTTEQERMQC
AQEEETLPPLSPDLPLPTETASDSEKDQDEAAAPATAQEHTISADSLIPTESSPKTGTEEPSPKTGEKRPPGLHLTDSPP
RKESRAGSRAENERAFVKDLKSDARRIAGVDSSSRLDALALFLQHKHGDYTHQKLRLAGHAAQSELRTRWENLKGEQRAK
QLFDKLYRQHFQHLYEGKDVHH
>L1-10_CQ#LINE/L1-Tx1 1082-4268 via tfasty with L1-3_CQ_pol, 2 frameshifts and 1 stopcodon. [Culex quinquefasciatus]
MMRCKMAQHSYNIATININTITNTTKINALRSFARTMELDIIFLQEVENEQLVLPGYNLVCNVDHARRGTAIALKDHIVF
SHIEKSLDGRLITVRVHNTTLCCIYAPSGTALRAERERFFNNTLAYYLRHQTEHVIVSGDFNCVVRQCDATGNNYSPSLH
TTIQQLHLQDVWVKLHPTSPGPTYITHNSQSRLDRIYVSPGLNEGLRTIAAHACSFTNHKAVTARLCLPILGRAPGRGFW
SLRPHLLSREHLEELQLSWQFWTRQRRNFPSWMMWWLSFAKPKLKKFFCWKSKIIYDDYQRKHQRLYAELRAAYDGYYQN
PRMLSRINRIKAQMLTMQREFTHMFVHINATHVAGEPLSTFQLGERRRKRTTITRVLNDRGEHIDGSREIEEHMVNHFRE
LYAVAEEAVDAEDRFECNRVIPAGDEASEACMSEITTAEIYSAIKASASKKSPGPDGLPKEFYLRAFDIIHRELNLVLNE
ALSSNFPPEFVDGIIVLVKKKNTDESARSYRPISLLNFDYKTLSRILKGRLENVMRAHNILSDGQKCSNSNRNIFQATLS
LKDRIVQLKQHKKRAKLISFDLASAFDLVSRSFLFTTMRSLGFNTNLVDLLKRIGDLSSSRLLVNGNLSAAFPIQRSVRQ
GDPLSMHLFVLYLHPLLSRLQQVAGDDLVVAYADDVSVIATSTHKIEMMRETFDRFRTVSGAILNTRKTISIDVGFINGN
PLHVPWLQTVDTVKILGVIFANCVRQMVQINWDTLVTKFGQQVWMHSMRSLTLHQKVTLLNTFITSKIWYLSSTIPPNAA
HTAKITSTMGSFRWRRLPARIPIQQLARHIQKAGLKLQLPAMKCKALLINRHLNEIDCMPFYKSIVFPENLNATTSRCAx
LKTLLQNLPRLPAQLQDRPSSDLIHQHYLELTDRPRVERNTPTADWQRIWRNIASKRLSSSQRSELYRFVNEKTEHRRLL
HVMQRVDGGYCTHCNSPVETLQHKFRECNRVRAAWQLLQQKVAAVLNGWRRLTFEELLRPALRNIGPVIRNKILKLFVTY
ISFINNAEGRIDISGLEFAMITE
>Tx1-6_AMi_pol#LINE/L1-Tx1 1769-5155[Crocodylidae]
TALTIVSLNVRSILTRKRWEQIEPVLNQVRADIICLQECGIPGERDYKHFEKRWRWGPSWWSGTNENKAAGVAILFKNPE
LRAKQVEEVISGRLQRMILSVGGTELEIFNVYAPPEREGRNALLRKLAVYVVGGRPRIIAGDFNCIIEVGDRTGEGGNGA
LDSSSRLLTNIIKEESLRDVWAGEKVFTRTDPSGKKQSRIDFVFVSKEIGIRKKETVHVAFSDHQMLKVEMSLGKSPMRG
KGLWKLNVRLLQDEEICQAYTRQYEGWRTLKKYFGSTREWWMMVKKRTGEFFRKEGRRCAGKRTKELRELQRKMQELLKE
AAEGRQVREELEETRQELETWFKRKTREKMFLAQAPWVGENEEWSRYFSARVKAAKGELKAVREEGGARVEKQEEVLEAT
RRFYEELYQKKETDRKKMKDFLEETEEKVEEEEAKKMEEKISLKEVEECLKTFKRGKSPGADGLPMEFYEKFWAWVGRDI
VEVFEEIAETGEAGKDFTRGVVILLFKKGEKELLKNWRPITLLNMDYKLMAKTLALRMRKNLQKIIHEDQVCAVPGRRIS
EAIRVIRDALSHIQERKTNTVIANLDLEKAYDRVDHDYIFEVLGKMGFPEKCICWIRLLYREAESQVQINGHLSGAFKIH
TGVRQGCPLSPLLFVCGMEPLAQRIRKDKVISGVKIPGGGEVKCVLYMDDINVVVRDRLSMERVLKHTSEYGEATGAKLN
RSKSTIMGVGNWRDLEKLGLQIREREIRVLGIPMDAEGKGNTAWEKVTARLRQILWLWSGRTLSFAGKVAAXKAVLLPII
LYTGIVFPPTWRQIAKVQREICVFFWNAKRERLARAELYKAREMGGMGLPDLGLFVYAKYVSAICKAVTEGEGKAARITR
FHAAAILRKWGVYQTSLKSPWAWQPPIHYIRMEGFMQRYKIGKVGLEVLKDHKKLMKAVRERDRMAPVGNFTEGQVKKVW
GAVAGKQLKGEHADLAWMVVRNILPVREVQHRWGLTSSSRCPRERCGEEETVGHVFWECTYAKGVWERVRRFLSVTKINL
SLAREMVLYGLIPKGPEETLLRTLLACVKTSLWKVRNLWVFKGLAFTERECLKLGLHELKYYIDRDKEEIGEEEAEKKWR
KKDWTHLFH
>REP_Tth_pol#LINE/L1? (solitary outlier)  gi|34761706|gb|AAQ82023.1| ORF2 [Tetrahymena thermophila]
MIRSNPIYRSSKKSQTQTSQTIKLDSRLISQINSHLNKHDSNLKSNSCSNQSKSSKRCINKDSIKKVNQHLGSNKISPPQ
KSPQQHLKSKIIGSLLTITGFNTQGVAKANKRNKQYSTLYLQKLFAESDATILLETNCKENMRVDIHNPDYIQMNNHCKI
RQMGAGTASIHHKEIKLAPYVASLNNEKALAQVLILENQQRVLIMGLHLQLQANPIEEQALLEEIISQVLQDNRLNHILI
YGDFNLDVSTPNSSHADARKTGQIRRLKDFLKSKNLYIHGTNRHTREAFKQNKIIKTQVDFFISSFAPNSILKIETITHD
ESNRGSDHYPIRIQIDLQVAKAREIKKVINLKQLDLLSQKLQKYIRSSPKNETEIRDKINSIKGKLDLKQQNSQQLRRNI
NERINAVIRAIHKHEKVLMIDQNPAKTRAEHMKTRRKIIQSKDTIIQHKVSEILKEYYAESTKKVQSLFKTNIKRYYQNI
KRVCNLGSKSNVLNTSSGPVENSNKELLFDSKDIQNEISKYFKEHYKCEAHINYYHTIGQLSSSEIDTLIQSSETLYSSR
NKAFSNDYIKDQCFFPPKYSEISNAMQSIPCSKTTKKQMILEKMLSQQQHRDTNLRTLLKDILTNPDSFRQTFNARQIYL
LKSESRQIINCRPITIQSSAIKILENAMLQHVQKLKDEGKVKDFHISQCGFQKNRSTIINICRTIALIQSTVAKKENRVA
IFVDVKSAFDSVNHEQLFQALRNQGFDDIFIKSVAFLYQHCRINGYQIGRGVIQGGKLSPILFNYLYEEVRVKILAIWKS
KKLDHQDLHFELFADDMLIILKKYKLTATLLEVLKQAYSEINLQINESKTKIMLIGKQETYIKDSLRLRQAKDIDLVMEF
KYLGLVITNVGKIHKDVAKKVEKAKILTQMLKRWRYNKLGIIPCLLLWQLFIKSQLQYASAIMITSAQSEKCMRSLRNMY
NSSLRDTLGLSRNASIQTICAVLGIENIESMILNSYDNLMAQINADKRIQMQFRVFTKSVKSDIANRYQQLLQAATLRNG
RVKQKFWWQLNNQYDDLIKLNIYLQNPSGQFCWKCQRFYKGDSWLYCQHKKEAWMVLQKILNTTSKTEIVSVLNQRNTNW
QQLPLDVRTSIQEQARLLVYQDISKVR
>TX1_FR1_gag#LINE/L1-Tx1 230-1637 via tfasty with 34392549_Tru_gag, 2 frameshifts and 4 stopcodons.  [Takifugu]
MVVGGGSGDLSRLTRRHGVKVGARSLYTVEEVALAVGEVIGHGSVKSAARMNGAVVVLFVEKVEQVNRLVEAGISVGGRF
EAVLPLSQPATKVTLSNVPPFITDEFLCRELSRHGKIVSPMRKVMSGCKSXLLKHVVSHRRQVYMILNNRDEDLNVCFKV
RVDDFDYVLFASSAHMKCFGCGEAGHLIKMCPHAAKSAASGSGERPGAAAAEPRTAEPGAAAERXVAGAEGPGVDGATAP
VGSDGSTGEGEQVGEKGEVSVQDGETGVCVQEGETGGVCVEVGDTGGACVQGGEAGEVSVSGGVSEQGEAGLQVGEVGEE
GGAGLxWSSxSCGADGAGSRLVSSSIEAPQQQQAWSCQSxKKQTDRxTDRRKKEEPDSSDSEGCVSDDGDLXQKNLGSQE
XKSYPPKMFKXFLQETKNMKGVNIEHYFPDKQQFYLSARRHXKNKAEAGFTDQEVFRLKKLILKVRREXL
>CR1-1_DR_gag#LINE/L2 233-1219 [Danio rerio]
RRWSAKATDLFYHTLLTYWLCSLPRKMSLPSLSLCAGEASMEALELELEEVESQIRALVVRRSRLREQLLVVPNAKAVSS
PKVRGNYNHIIPSTSTPRPSLSRPSAPGARLSQASFTPTPGYHGAWVQPRKVLPRSRGRTSPPVFEISTENRFSPLRESG
PDVAIIGDSIVRHVRAASSKGNKVRTFCFPGARVRNISTQIPTILGAAESPGAVVLHVGTNDTGLRQSEILKKDFRSLIE
TVRRTSPATQIIVSGPLPTYRRGNERFSRLLALNEWLITWCKEQKLLFANNWNLFWERPRLFRPDGLHPSRAGAELLSDN
ISRLLRTI
>CR1-2_NVi_gag#LINE/L2 666-2003 [Nasonia vitripennis]
MAPGRNKPPDRCRSNFACCKHKPATTAVCVICDEAYHHSCLKQKNENYKFVGNNLIVCPEHSYQNVTSKIDEEVLSESAS
LLIAQIKLKKSEDVRNDLLAETSDKTQDLQEAESIEESDIELLRTENMLLKRLVSELTEKNDLLKEKLQNIKSGTDVKLR
TYSDTIKYSRATQKKVPKISVKKSNNSNIDVMKSVIECLTAEKNIQTKNIYVNKNDEVIISCLNDNSAELTETVLKEKLE
DECNITKNELNNPKIKIVGIDNYMNMQTKEIEKDINERNFSNFEKNGEVLHMYKNKHNNLSTVLMEVPAEIYKHIRENSN
KIFVGYQHCKVYDLVNICPCFKCGRFGHNAKKCRNDTLCLKCSETHKTSDCDKDSAKCINCHYSNTRYKSKLDTKHFTYD
SSQCSILKKKLIDISTPSIIPSNPPYRQLNQSIATWNQQTGSKYL
>CR1-1a_AG_pol#LINE/L2 1776-4574 [Anopheles genus]
QVGEELGRFREILYFNVAGLSSNYAMFRETVEKVQPLLVLISETHVIEEEAFQQFHINGYRVVSCLSHSRHTGGVAVYAR
SEIVLKVIFNESLEGNWFLGVAVSKGMTAGNYGILYHSPSASDSRFVDILEEWLDRFLNFSKLNIIVGDFNIDWLNVEKS
AKLKSLMDSVNMKQKVNEFTRIARQSRTLIDQVYSSTDSIKVTTDPLLKISDHETLVLNINVKRCETIQRKFKCWNRYSK
FALCNHVSQGLRQEAPSFNEAADLLWNTLKKAMGTLVEEKTILSRETSRWYTLELSRAKRKRDEAYQHFIRSNSGYDWTE
YTRLRNTYSRNLKTTRRNYFSGEISKHKGNSKELWKVLKSLLRPEESRVSVVKFDGLVESEDSIICQKFNLFFVNSVLDI
NQNIADARAPDSLFCNDAPGNQFKFQKITKEKLKTICFSLSKTAGIGNVNCNTIQDCFHVVGESLLIVINQSLEEGIFPE
TWKESLVIPIPKVSGAASAEEFRPINMLHVLEKVLELVVKEQLVQFLTRNDLLISEQSGYRQGHSCETALNLVLARWKVL
MDRKESIVAVFLDLKRAFETISRPLLLQTLRRFGIVGKELNWFENYLKDRTQRTVFGNSISEPIENTLGVPQGSVLGPIL
FIMYINDMKQVLKSCEINLFADDTVLFISHKDIKQAESLINFDLNALDGWLRYKKLALNVKKTSYMVMTAGVLDSPPSIV
INKEPIERVRQVKYLGVILDDRLKFNTHIDWVIAKVASKCGVISRLAKDLDFFGIVNLYKSLISPHFDFCSSILFLGNKG
QIKRLQRLQNRIMRLALGCGRRTSSFVMLDILQWMSVEQRIVYQTMTFIFKLLGGLLPGYLGERIVRGSDVHRHCTRRAN
EPRVPNLISHGARNSLFFKGIQLYNRLPGEIKNASNLPDFKRRCAAYVKQTV
>Tx1-13_CQ_pol#LINE/L1-Tx1 179-3436  [Culex quinquefasciatus]
MNYTCIIASINLNAIQTRLKLSLFHDFVKNSNADIIFXQEVAFNNFSFIFTHHAIVNVCRNQGTAILIRKGXDYDDIICD
PNSRIVSVLVNGINYINVYGHAGFXLKKERETLFAENIAIHLNKAAARAHVLGGDFNCXLDPTDTKGNTKKNCNSLKVLT
SKMALKDVXKALKNQAVQYTFXRGDSASRIDRFYASQDXLKSVLNFETWPVIFSDHRAILMKISIQKSDLGTSFGRGYWK
INTAFINDDECENEFCFTYEALQQRHSYENNFMNWWTTHFKSKVKNFFKMKSIEFNRNIAMRKSELYKTLIELSSRQNDN
EDVSREMGLTKSLIFKIESEKLKYYESKLSSNSILTNERTNIYQIIARHKFNQSSRIEKLVDGCNKIVGTENIKKFLFNH
FSENFKKHDFLEPSCRSLNYIKKRLNQDDSNSIIGPITEEELKKVVWSCTKKKTPGPDGICYEFYVKHFDLIKNDMIKLF
NDLLRGNVVIPSSFCEGVITLIPKSGCAENISGFRPISLLNCDYKIFTKILANRIQNVLGNILEEGQTACVNSKSCVDSL
DMLRKIIVKASGSKRFKTAIVSFDMERAFDNVSHDLLWSILEKFNFPDQFIACLRNLYRNATASVLFNGHLTNCFKIGRS
IRQGCPLSMLLFVIYLEPLIRELYSSVTGILLDHSFIKVVAYADDVTMVVKTDYEFDNVLKIIEEXGKCSGIRLNSKKSS
YVRINNCKLGPQILREETQIKVLGMLIVNNWKDMIDKNYSKIISACRGKLNSICIRNLNFVQKSWILNTFILSKCWYLGQ
ILPPDKRHIDELKKMVLRYFWGSQIFKVEAGQLYLPFERGGLALVEAEVKFKALFIRNILYKNNVVNRKHYLIDNISTKN
LTRNTYDWVNIAIEYEAYDFLNTSALIYSSLLSKQSCEPKIQSKAPSPDWLSTWENFSENYMDSDAKSIIYEILNDIYPN
KEKLCSYNVRGLNNAECEICXELDTNLHRITNCTNSKEIWEWVVEKVNVNMKANLPDPMEILSAYIGTKNRIFQAVYWIV
SEAIVYNMRHYKNPSLFVFKSILRNKRWDQRQFFVRRFGKYAFVF
>Tx1-9_AMi_gag#LINE/L1-Tx1 1097-3602 via tfasty with Tx1_XT_gag, 1 frameshift. [Crocodylidae]
MAGQEPSGGGGRCPHRASCSPHYGGGSQPSPQGDACPCSLRPGGRVQPTSSGGGEACNLRCRGRWDSGREPTGPGGHLSH
HRGPRARAVGRAPLQPPPQLGVGRARALPRSLDHRRLRGPGALHQPAHPLSLSLALAQAPPTWPPGGGNRSYAQAAAGRP
KAGGPGPSTAGPSSSGSGAPFPALTRRHGVKCQLPKRENLHFETWVQALARVVGAPKIVAASRFHGKGVFFLASEAAAQK
AVERGLVVEGEYVPLEPLEELGTRVVLSSIPPYIPNWALLPQLQTLGRVISPVVALSLGCRDPGLRHVRSFRRQVMIQLA
AGARLEAEGCLVIPYQGALVRIFYTLGDLRCFRCRAPGHSHHECPMGQAGRASAGPTGKRGAPTTGAPPPSGPPGTPATT
TSPPVSSRDPAPQPSLVESQGGHQQRGERGSRAPLPLVIPPSWLPPQPSPSLAGACPPEDHPMAEWVQVPSGRKGKRKAR
AQLEPSDVEDSSPPPKTTTRGEGAAQPPGASPAVPDTPPPGKIKRVIPTEEVSGLLDSPEQEPMGEALHSADQGLPPETT
GAEAEACPKEGLAAEPPPSDLGDTEALGLTPVSSEGGGPLSQDPEADAGATPVPGGSLPSPSQENLTCSLPHSPAPEGVA
VGSPNQRADLVGDPAQTPQGSSSTPPFCEGAPPPPLPPPLSQGAAELSQSQPESGVLADRGVQMVPEEPSELQDQEEDAR
EPAGSMEPADLSVPAVPRDELLAFLDRDYTRRSASKVQLALDRWGDFDSVLATARALAGEGKGPKSCNARIYRRARSFID
ALYAYGRALREPAGPTPGVEMREAPAEPSTPPPPA
>Tx1-8_CQ_gag#LINE/L1-Tx1 149-1336  [Culex quinquefasciatus]
METGVRKNTLKLCFQQGSKIPSNLEVLKFVTGTLELGAADLHSVYKDENDGSFYIKLMDEPTFTEYCGRLEELYMFRYDD
DSRSPVTLVVASRIFRYVRIFNLPPEIDDKTIAQVLGQFGTIRQHVRERYSPECNLNIFNGVRGVHMEIAKEIPAGLFIG
HFRARIYYDGLKNRCFFCKQEGHVKSNCPKLANSSSGSGGSRSYSTVTAQGRPVNAPYLSVPPMTPVMERLVKAVQEPVP
SAEGDKSATSPPAGGQGLSGPATPPTEATGTPAVIEEPQVSAETNQQQELENMDTGDEGGHQGVGSGTGDEGGIGDHNRG
AGTGKGGGLLGVKRPAEPSSDPEANSSEGPEDSTGQLPFKEVSGGKKNKRSKKGKKDQSKPLSTISTRSLLKPAK
>Tx1-9_CQ_gag#LINE/L1-Tx1 174-1310  [Culex quinquefasciatus]
MEPKREFTIKLRFGAEARNPNNAEIFKFFNKQGWTSEDLSAMYRDDHSVFVRFKTEPMMRGALTKLGPXVKFDYDNGTSL
EVXVQAAAGTFKYVRIFGLPPEVDDRHIVTTMSKYGAIQQLVRERYSVETGFPIWNGVRGLHIELVSEIPAQLTIQHCKA
RIYYDGLQNKCFGCGALDHLKATCPKRNSVNKRLAAAATPAGGSFASIVANGTPAEPVGASPASGMVVLNPKPPAPISKP
NLEDHVEPVAPEFTAPAEQLALPQGGGDEVAEESGDQSMDEDDDNQQNEGEVSPNGAASMETDDAWTEAKGKGKKGKGKR
GRPRKPIESDASESDAIGGKQFIVPAQGADLLAALALPKPTGPRTRSASEQRSPHDNK
>Tx1-12_AMi_gag#LINE/L1-Tx1 37-1211 via tfasty with Tx1-4_AMi_gag, 2 frameshifts and 2 stopcodons. [Crocodylidae]
MVASYAEAAQKAAASGEAQARQAAARPSRRAYSVRFRGNRQSNADRYLPSDMSREEFYRKVLRDLLQVNKANLFYMIYLG
SDSEWVIGFRYPASRVDFWHRLWEQEEDPRLANLVFFCFRGSAPGKAVEEKTVKLQFFTAEIEEEDICFWLSRHCESVGS
VEEEKDGEGIWTGAWIARVQLKRGPDKPEALQHLPAALLGHHKGLIYYREQPKLCHRCGxEGHMRKDCKVEICAMCQEKG
HKTGACGKAWHCNLCGEEGHQFRKCPRAKANAGFQEEEEDDVPSMLSDITYAGRHRRSxLRGSGARERGEGRKGRGLTRD
RDPHAISRSVGETIGQLKELAKKATGSQPNLAEEQSAEDGETEEGAMEVTRETPEAGSQPQEGEGGHGRGR
>Tx1-11_AMi_pol#LINE/L1-Tx1 273-3640 via tfasty with Tx1-2_Crp_pol, 5 frameshifts and 6 stopcodons. [Crocodylidae]
MGILIVSVNVKSLLRKEKWDTIEMALGQLQADILCLQECALPSSKDYALFKKRWQHGPSFWSGASDDWAVGVAMLLKGDR
VRPLQHREIIAGRLLQITLETEEGNFELLNAYAPANRDSETCLPQEHDSSSANGQPVMITGDMNCILEVGGRISGGQMKG
LDRSSKLLKQLICEHSLVDAGKEATGPGGNFTxVDPLGQSKSCTDFILFPKGWKVVKAESTLVCFSGHCLLTVEAEMGEQ
PKRGKGMWKLNVTLLEDEKIQQEFRQHYAGWKTLxPGYRNHTEWWASVKERTRDFFRKAGRRQAWFQRRQQERLNRKLQS
LHKQAAWGWDVREAMREVKTRIGAWYREQGYVGKVAxVEEGEEWSAYFSKIKETKKEAMTSLVDGAGVEHQSNEGMLEMA
AAFYRELYTAxPEDPGAMQDCLQRLTRVLGEDEGQRLVEEWTLEEINTMLRSFQNSKTPGADGLPKEFYVAFWDQVGPDL
LEVYRERLQEGHLGAGMEEGLITLLYKKGERRDLRNWRPITLLNFDYKLMAKVLAERFKSVIGTVIHEDQACAVPGxQIH
DALMQLRDVLSTTGEGTVNLDLEKAYDRVSHRFLLETLKKMGVPATFVTWIKALYTNVSSRVLVNGSLTAPIAVESGVRQ
GCPLSPILFICAMEPLAQRLRQDRRIRGVKIPGRNGEETKVLAYMDDLNIICRDKGSVERALQHTQVYGAAAGAKLNVSK
STCLVLGKLGDPLPLGVSVPREGVKILGVEFDPELTGQRAWEKTEAKARQRLGLWQSCCLSMGGHVALMKVVLLLMLLHT
ALVFPPSEQVIRRIQRAMCVFFWNSTWEKVARAKLYKAKRSRGRGMPDVLLFLWAKYMSQVCKLARGVESKTASFVKYFA
GQLLRQWQVHTMTNGSPWTMVSPWFYEILKCFxEKYKLHDATLATLVNHRKIREVVRARDTISPVDLLPGDSCQAVWERI
FHKDLQKEHRDLNWQAAHRALPVRAWRNSAGQRGPSNCPRQTCCWQAETIDHLFWDCPYAREVWKKVCALLLVVTGFRNL
TREAVLYGHLTRQQGAPTARFNQFISCFRYALWKARNLLINRHSDPTVKDCIKMGLSEMYWYYRKTEEDDGKEMADLIWW
SLA
>MIUSE1_TM_pol#LINE/L1 3261-6875 [Triticum monococcum]
MNSLCKSWNVLCWNVRGLNSESRQRAVRQKIDESHCAIACLQETKCASFDSRSIKGFCPKRFDSFAFAPSLGASGGIVVV
WNSSVFDGSLLEIQHFAIVIEFVSRQNNEKWTLVAVYGPCQGEARDNFVNWLYHLNIPVEENWLLLGDFNFLRSQDNRNL
PGGDLNDMFLFNEIIGHLGLLELPIKGRSYTWSNMQDNPLPEQLDWFFTSMDWISDYPMTKVRPLAKTTSDHVPCVVSIK
TSIPKSNIFRFENYWLELEGFMDCVDSSWQRTSRKGHITARIADKFKSLRMCLKRWQMSISKLKMLVCKCNKAILLLDEL
EELRPLYRHESNFRKVVKTHVEKVLHLQWLYWKKRCTIRYIKVGGENTKFFHAMATERHRRNSIASLKLPDGTVVSDHSQ
MEGVIWNCFKNRMGSSRGIHMGFDLSSLIAPVEGLDVLTKPFEKEEMDKIVKHMPVDKAPGPDGFNGLFFKRCWHIISPD
FYEPAQAFYDGTAHLENINDSYITLVPKKQSPEEVGDFRPISLTGMGLKFLSKMAANRFQEVIMQCIHKNQYGFIKSRSI
HDCIGWTFEYLHQCHQSKRPIVILKLDFEKAFDSLEHEAIVQILRHKGFNEKWILWMKQLLSTGTSSVLLNGVPGRKFKC
KKGVRQGGPVSPLLFVLAADLLQTVINDMFRRGILHLPIPCHDQDYPVIQYADDTLIILPADKVQLLALKDMLQVFSVST
GLDVNYHKSFIIPINVDNAVMTDLATAFRCQIGKMPFTYLGLPVGTTRPKMVDFMPLVDCMERRMTASSSFLNQGERLQF
LNSVLSSMPIFFLSSLAVPAGILKQLERIQRHCLWRKNRAEPAQSMAAWELICRPKNKGGLGILNLGVQNVALLLKHANN
FLNKKDIPWVSLIWDSYYHGRVPQGTSDCGSFWWKDICKVLHNFRDCAWVQINEGDTTLMWSDNWKLDDQKLQLQFRFPR
LFSYVKDPWISVKDFLDSQDMYHHFHLPLSAQAFDELVILQSLLENHDRDNGSKDIWLWNGTAKGYSPKLFYSHVFVAQS
FNPLTAWIWKSSCTMKIKVFAWMLIMDRLNTKDMVERRHWHLEDGVNCVLCPLQARETRDHMFFNCNFSIRVWNYLQIDW
SSGDSMTELAINAKRSFRKPFFTEVVFVACWNIWIVRNAKVFRHERAGFNKWRAAFLHDIALMQYRIKPAYKDDLLKWIS
FLPP
>MIUSE1_TM_p2#LINE/L1 2290-3093 [Triticum monococcum]
MVFDASAQQNSTQSSSDVQLQEPPAIIDRSVSENIAADVEDTSNWAIVVYQPPLVVDVLALASPVIKVPFGPPLPPEMIW
RRSFENLLNAPVTFEIPQPLMPKPLSPVKRRWSLAFQIDDLPLLTWKQPDLARPVARALFVDEADETAPAVVPTSQVRAR
SRRPRKTMAPTPLVETSVRRCTRSSAQRDGFKPTFHELVLQPKKKKPRAKPIAAEEPSTTASEGVPPPTPISHLQAIGKE
LGIDAALLTEEALMVDPTATTNNASNE
>RILN6_OS_pol#LINE/L1 2-1360 via tfasty with MIUSE1_TM_pol, 2 frameshifts and 2 stopcodons. [Oryza sativa]
WNARGLNASAKWEAIRNKTEESACVVVCLQETKKENFDRCFIRNLAPRRFDAFDFVPSVGASGGILVLWNISILLGQVLD
KQSFGISVNFKSAHSQDSWKLTNIYGPCEEPARSEFIAWFKSHDIQPLYNWIFLGDFNFYRSIRNKNRTGGNIKDTLVFN
DAIGHLGLIELPLKGRACTWSNMQSNPLLEQLNWFFTSINWTIDYPNTSLIPLAKTTSDHVPYKISIGSSIPKANIFRCE
NFWTEQADFLEMVSECWASTPNIPDAAKNISKNFKVLRAILNRWSKGISNLTVMIKNYNSVIKHLDLLEDRRGLHNPKFN
LRILVKKxLxIWHHYKNLYWQNRHKINKVKLGDECTKYFHRMATIAYHRNSIAQIKNEDGVWIQDHVGKTCIIWNAFRDR
MGTSSNPTMLFDLSALILPVQNLSHLSDPITQQEIDVVIKRMPNDKAPGPDDF
>SHALINE8_MT_gag#LINE/L1 151-1689 [Medicago truncatula]
MSTICAFNLFLVNLPFECANLLLIWSLRKNPANHMSSSLPLLIVFSETYYPESKVIIDLHLGIYGAQSILLIVMIHELLA
QIYRHDALCFKLSYKSVILVVAGVHYPLLSIHYSMRYNLTLLSYITFLSLNFIIQMENLNLNSDSSAATQRPNLTQAELL
DLCLIGRVMVNKPIHISTLETRLGPIWEPKYQMTLIQMEGNKFMVQLYSKADLTRILDRSPWLIDNNMLILKKVAIGEDP
LMVALDTTEIWVQIHQLPFGFMDEKVGALVGSHIGKMIRFDEENNYGPWRKFMRVRVEISMDTPLQQELVIEREKGDNIK
LVFKFEKLGKFCFVCGVIGHSENFCSDKFESSSTDNEKRWGTHLRAENNAVGNGSKEANRWIVGGRSKVTGNRNGGGAAN
IDCHSKAITSQGVSNHRIFGRIKVGINSETRALTFFKYTECERSDGTGLVRWWTEIDPTKVIIDVDTSKEVRNTTALFVP
NLTKSDKVNKVLAEGMTEKDEFLYANGGGAEAL
>SHALINE5_MT_pol#LINE/L1 3129-7346 via tfasty with ATLINE1_2_pol, 3 stopcodons [Medicago truncatula]
MWFSHARFLYPFIYSLMIIISWNCKGAQGLNFPKALNNFCRKNKVDVVALQETRCSGSVARKAIKKLGFKNHIVSEAQGF
SGGIWLLWNRPDVEFEVIQNNFHFIHIKVKEKDVDPWLLTVVYASPRGNERDITWQQLRGIAANIQDLWLMMGDFNEIAS
LDEKKGGAQHDIRKCLNFSNWINECRLMEVTTTGTIFTWRGPKWNGRDRVFKKLGRVLCNVEWRLRYHEGFAKVLPRVQF
DHHPIMVLMEGEPSNRGNRPFRFEAAWITHKDFHRFLREKWGRGSDLLHTISNLTPQLKDWNHETFGNIFRRKNELLARL
NGIQNSQNYGYSHFLEELEKDLQEQLAVTLYQEECLWFQKSRSKWIADGDRNTKYYHAKTIIRRRKNKIMSLRDDSSDWV
DEPDSLKNLVRSFYTNLFREDTPIRDNIVSWTTYPNVVEEQHERLSAIIQLNECxRALFDMSPHKAPGEDGYPAVFFQQR
WDTVVDSLFKFANQVWVNPSFISFINNTLLVMIPKLDKPEFVSQFKPISLCNGIYKIISKVIVNMIKPLLDRIISPYQSS
FIPGRSIHHNIIMAKEMVHAMSKMKGQKGFMSIKIDLEKAYDRLNWNFVKNFLEECKFPPQIIQIIHHCISSPSYKIMWN
GEKIDIFYPSRGIRQGDPLSPYLFVICMDKLSHIIADQVEANYWLPMRAGRYGPKISHLLFADDLLLFAEASIEQSHCVL
HCLDTFCQASGQKINRNKTHVYFSKNVDTQLRAEILQHTGFNQVNSLGRYLGANLATGRNSRGHFNHIVNKIQSKLSGWK
HQCLSFAGRITLTKSVFNTIPYYHMQYAKIPKTICDEVDKIQHGFVWGDSDQGRKAHLISWDVCCLPKIDGGLGLRQARN
MNEAFLMKILWNLINNPDKLWGKVLHSKYGRGKDLTANISVQPYDSPLWKALAGIWDDFKRHVVWKIGDGHSTNFWLDKW
SPNNGSLLSISNQDYIDTTLTVRDVLTPSGDWDIDFLMNNLPDYTVSRVLALPAPTDKDGPDTIGWSGTNTHQFTVQSAY
SLQHQNCPTVEGDWKILWKWHGPHCVQTFIWLAIHRRILTSLRRSRWGVGISPTCPCCGNDDETVLHVLRDCIHATQVWL
HIVPSNVITNFFSFDCRDWFSNNLKRKMVGTSTCRWQTTFMTTCxYLWKWRNKTIFEADFQRPNNPNILIQTFVRDIEDY
NLELFHRGPKLTDTIYIGWKRPQEGWIKLNGDGACKDMGHISGCGGIFRDADGKWIKGYTKKIEACDALHAEMWGLYLGI
EMAWREHFDHLIVESDSKILIDMISDEFKFNGNVPILVHRIRKLLRMDxHVQINHTWREGNRSADWLANFSISVNHLNLI
ISETPPIELRKLMFDDISRACMPRNVRLISQFLFFWALPSIVPKKK
>LINE1I_MT_pol#LINE/L1 75-3399 via tfasty with ATLINEIII_pol, 2 frameshifts and 2 stopcodons.  [Medicago truncatula]
MKLVCWNVRGCNKPFKQKEIKNFLLKNKFDMCILVETRVKANKFNKISSMIFKRWPVLNNYDSAANGRIWVSWNPNVLDV
KPIASSAQAIHCEVVNLTSSECFNFVAVYAFNTLEQRKELWNFIAHTSAQNSRNLLIGGDFNNVLLVDDRRNGNPVTQHE
IQDFSDCLLHNRLSEVRTIGDYYTWCNNQTSGDRIYSKIDRFIANTSWLQKFTNAVDEVLPKGASDHCPISMDMSCPASP
KNTPFRFINDLTDHHLFPALIQEKWGPNLHTNLLTNIWFKLKALKKDLKELNSTHFQGIAKKVEDARTALVDVQRQLSSD
PMNLDLIEAEKVCLSSLEKWSTIEEKIWMQKSRANWIQLGDSNTKFFHAYAKERRCQNNIKFLITEDDTRIDKHNLIKEE
IRGFYLKLMGSSVDSLPMVDKNIVKRGPMLSQHQQDLLCSEFTAVEVKNALFSMDSSKAPGIDGYNVHFFKCSWNIIGDS
VIDAILDFFKTGFMPKIINCTYVTLLPKEVNDYIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIIxS
HELVKSYSRKGISPRCMVKIDLQKAYDSVEWPFIKHLMLELGFPYKFVNWVMACLTTASYTFNVNGDLTRPFAAKKGLRQ
GDPISPYLFVICMEYLNRCLIQLRKNAAFRFHPRCKRLNLIHVCFADDLLLFSRGDVDSVVTAFSLFSAASGLKANQAKS
SIYLGGVSMSGQDAIVTKFNLVKGELPFRYLGVPLSSKKLSVIQCQPLVKRIICRIENWHSKLLSYAGRLQLIKSVLFGV
QTYWSQVFVLPQKVLKLIQTACRVFLWTGKFGTSKRALIAWERICLPKTAGGWNVIDLKVxNQAAICKLLWNLANKKDVL
WVKWVHEYYTKGRNVLLMDVPAQASWVIKKVFGAAKTISSVDGSIFQQANFSIKRMYNALRGDFAKVGWRKMICNNPAPP
KCLFVTWLIIHARLPTCDRMLKVGIQCDQVCILCTKENETHSHLFFSCDYADAVWKGVMRWMNMTVNTSNWHSILQYIQS
HCNSNNGMHQAHIMVLSVTLYMIWKERNDRKFQNCYRSVQQLLNQIKMDAYIRGLQFKKVQTLMIRVRG
>LINE1-17_SBi_pol#LINE/L1 3961-7577 via tfasty with RILN8_OS_pol, 1 frameshift. [Sorghum bicolor]
MNQTNSRNWVVLSWNVRGINAQWKWNAIRDKVVESACDVACFQETKKEVLDSTFLRNVLPASFNCFEFQPSIGASGGILV
AWKDSLFDGEVFDLHTFGVTIQFKSKLNNKIWFLTSIYAPCAPDRKEEFLNWWKSLTLPNDSDWISLGDYNLIRDQQNRN
KPGGSYQEMYMFNEAISSIGLNEIKLSGKKYTWSNLQDSPLLEQLDWVFVSSTWLNSYPNTTARLLTMQPSDHNPCVVNI
STDIPKSKVFRLENYWMHHNHFLPIIQNAWSLPCTEQDPAKRISAKFKVTRQVLKKWQNSLPSLKTAIANVKALIQFMEV
LGEFRDLSLQEWNFKQILQDKLLNLLQQQRSFWKQRGNINWATLGDASTAFFHANATVRHKRKYISQLTIQNDLIVTSHK
DKQQAIWDDFKSRLGTTEWTNSQSDLNFFINSVDNLNCLELEFTTTEIDAVIRNLPNNKSPGPDGFNNEFFKQCWSIIKQ
DFYDLGRAFFQGSLCLRSINSSHITLLPKVDNPSSISDYRPISLLNTSFKLLTKILANRLQPAITKMVHQNQYGFIKTRT
IQDCLAWTYEYLHLCHHSRKEIVVIKIDFEKAFDKIEHQAMIDIMKTKGFGNKWIQWMHLIFSSATSSVLLNGSPGKTFH
CKRGVRQGDPLSPLLFVLAADFLQSLINKARAMGLLNLPIPMEHNLDFPVVQYADDTLIIAEGCTRQLFFLKSLLNTFFL
TTGLKVNFSKTMMIPINTPPEKLETLSKTFGCQIGELPFTYLGLPLSLNKPRAQDFMPLINKCQIRLSGLSSLLNQAGRL
ELTNAVFTSLPTFYMCSLEVPKAVLKQIDKFRKNCLWQGGEVNARKPPKAAWKMICLPKKDGGLGVLDIRKQNEALMMKN
LYKFFNKKDTPWVNLIWNKYYRNGKLPNHTKKGSFWWRDNLKLLPSFKNLTNITPGVGDSCFFWTDSWRPQPLVSEVPEL
HSFAKNSTITLQKLLSTSNLAGLFHLPLSQQALCQFQWLQQECQNIQSSENNDKWCLKAWVSTSYSSAKVYKELIIHQNV
HPVFKWLWKSKCQPKHKVFGWLLLKDRLSTRNLLRRRNMALDNHNCVLCQLNVEETTLHLFLDCTFAQECWHWIGISIRN
NQTFQDLATDLRANHQTQPSWIMTMAVLICWSIWVTRNNCIFNNTQPTSQLCRQNLVKELRLVKYRVKKEDQALFEGWVK
GFLHEF
>LINE1-11_SBi_pol#LINE/L1 3181-6802 via tfasty with LINE-7_OS_pol, 1 frameshift and 1 stopcodon. [Sorghum bicolor]
MNTNSSSSFRRFHVVSWNVRGLGDSDKCNVVRNVFSDAKTSFICIQESKLSEVNFFKAQTFLPRPFSSSFVMLPASGSRG
GLITAWDPALFTLTSQLSNSFSLTTSFSCNASNIDFTITNVYGPSDHSASAQFLQGIRDTKALVSGAWILMGDFNLVRCA
ADKSNGLFNSNLADAFNQTIQDVVVSEVDLSDRRFTWTNNQTFPILAKLDRVFTNVPLDLAFPMANLSSMPRPTSDHTPL
LLSLASDIPKTDFFRLDNFLLRNESFLASITQGWHQAATCTDAAGQLVACIKAARAAAKVWKRCNRAPPEITQNCQFLIQ
LFDYFEESRTLSQAEFQVRGLARERLHEEIKAKAAYWRQRSKQKIIKECDANTAYHHARATMQMRRKFIRMVRVNDQEVV
SHAGKAEALSNFFKSIIGVPGQVTLIDLDSIYGDSQRPDEHISGRFSECELKQAVLAMNSLSAPGPDGFGPAFYQSAWPS
IKQTILAFAEAFYEGVADLERINRSHMVLLPKKPDAVDVNAFxPICLQNSALKILTKALSTRLQKQIPRLIDIHQTGFVK
GRSIADTFVYAAELVQTCHKRRRPTIVLKLDFAKAFDTVNWVGLQRVLQARGFDQRWIGWMLRLLDTSKSAVLVNGHPGP
WISCKRGLRQGDPLSPYLFILVAETLQRMIREAEQIKHPTDEALPCAVLQYADDTLIVFKADVAGAVKLKDILDQFAAFS
GLHINFSKSTLVPIHTSEQIVSDCVQIIGCTRGSFPQPYLGLPLSANKLPVSAFNIYIHKADKFLSSWQADLLNPMGRTV
LVNSVLDSLLVYLMSSLQLPPSAIEQMDKKRRAFLWSGDKSGHSSPSSCLIAWIKVCSPKDLGGLGIRDLGVQNICLLLK
LLHRLHSPQSSAWAIWVRGRADITTLQGDLHGDHWQTLRTILPLYQAITTVEVGDGSTCSLWNDVWTGDECFADRFPALF
SHCNIKTQTVREAKLSGIRSTLVPRLSTMADHELQLAQQLLDQTSLSAAQDKRISDFIKPDDSIDTGAIYKMLKARGQPS
DPKATFIWNTWAPPRVQLFMWLLLQRRIQCRTVLFRKHIVDSPICEICNITDETPEHIIHGCSLGKEVWTRLNLQSMISM
DMGQLHTLANHTSTAIPELPSFIALVCWQVWKARNAKVFRNEEHSVDRVLLDCKAAAELWQYRIPRAKRQTATQWCTILQ
MARQGQG
>LINE1-39_ZM_gag#LINE/L1 815-2548 (probably misses C term) [Zea mays]
MDGPGHQDLQRKGSVWRRITPSQSAAGTESSTQPALMAASSGATAPELRSMRKRRRAKRRRGVVEQALLPLPPPSDHDAP
LVMQEEAGSDESSVEPTCVLELSIGMAQEEVALRRALYVMVVGTRPKVLGAEVVEEVARCFGIDADSLAIHQAMPEDFLL
FLPDEDTATRVFNEGKVFRGPRFNLQFKRWSRFTHATAGALPFLVDVQIWGIPAHAWARSTAEHLLHDSCLVSDIHPATA
LKSDLSSFKLRAWCFDPKKLHRNMKLYIAEPGMVTSEKRCLSYNISMAAFPVDASSGAEDSPPPPPADGTHPDGDNERHR
PDSPSRHPRKGAGQRRSIHLRLGPQQTEGCGWGAATLTNADPFMTGASGCDGLELYPETGPLDLAVHASPLHDNLSAGLF
ELNGPGSPQSRLVSGSGDITGGDMLKKMHSQVDIVADFADGLSGQHSNGFDGLEMRSGTGPLDLAIHVPPQHNAMCAGLL
ELSGAGSPQARLVWGTVDTTGTASPQIHNGSLELAQFCPPLIPLPQTDRPLKVYYRKKKRKQTKAHGGVSGVCNWAQYSY
KISTEKSGSVWRNWGYI
>LINE1H_MT_pol#LINE/L1 5-3840 via tfasty with ATLINE1_10A_pol, 1 frameshift.  [Medicago truncatula]
LFAAQLLSEFHKHVYSGSCNSNWRLTAFYGYPDSGRRRDSWDLLRHLSSLSNDPWCIIGDFNDHLSSADKRGGPDRPPWL
IRGFQDAVNDCNLFDMPLFGYQFTWFKSIGTDSSKEARFDRALVTSSWTNTFPNAALQTLVAPISDHTPLLLQLHPIPWR
QPYRSFQFNNSWLLEPELNELVKNNWEHYPPSNILTKLNHCVEDISSWSSSVTPNFKHLINKQRSVIEDFRTYSNDASDP
QLQLLQNNLATLFLQEESYWRQRSKIFWLSEGDTNSKFFHASASARKRNNTIKKMRDNSGNWITSHDDMCTLVHDYFTSI
FTARQGDHQPIISCVQPRITAEDNTILTQPFSEQEFKEAIFSMHPDKSPGPDGLNPAFYHRFWKDIGGEIFTTAINWLSS
GVIPPDLNATHIVLVPKGDNPESMKDLRPISLCNVLYKIISKVLANRLRPLINKWISPEQAAFVPSRSIMDNALTAFEIL
HYMRCKRKGKKGEIALKLDISKAFDSVSWSYLQAILSKLGFCSQWITWMMMCISTVEYHVIFNGDRIGPITPGRGLRQGC
PLSPYLYIICAEGLSATIKNHELRGKIHGTRICRTAPPVSHLLFADDSFLFCKATISEAQYLKDILSSYEHASGQAINYR
KSAIAFSSNTPQDTISSIITCLGVYSAIGSGKYLGLPSMVGRSKKAIFSYLKDRIWKNCQSWSARSLSRAGKEILIKSVA
QAIPSYCMGAFLIPTSLCEEIERMMNSFYWGSKKNGRRGINWMRWDKLTLHKSLGGLGFRNLEAFNLSMLGKQSWKLLSD
SSSLFTRILKAKYFPRRDFLDATLGHNPSYTWRSLWSTQSLLTLGHRWKIGDGSKINVWSMPWIRNLPSLKPSTPPPLHH
EDLTVNYLLNSDVNSWNITLVQSLFNSVDAAAIVSIPLFPRTATDQRIWKATADGSYTVKSAYRICSDLIPAINHIQNDH
RWNTIWNLQIPPRVRSFLWRLAHQCLPTRANLLTRGIPCDDSCVFCDPLAETHMHLFFVCTKASNCWELLGVNHIIRELL
LTTNDFTTMLFDFIDRLHSQQQALVAMFLWSLWKSRNSKLWDAIDTTPISIVTRAKDTINEWSCMQRAKAPIHHANSVHS
WIKPPVGTIKCNVDAATFNNNSIIGYGMCFRDYTGHLLIGKSDFLHSSATVLEAEALALLDAIKLAISNGMHVVLFETDT
KILADALTNNSSPTNEFGDLVTQCRSFLLNNPDFVVSYVRRQANRVAHSIARASLSHPSPHIFYHVSPTLYSLIMNEMN
>LINE1G_MT_gag#LINE/L1 439-1908  [Medicago truncatula]
RRGEKKLYFKKEKNVEAEGEVVLKDVLKVEEEMKKVEGKKDRLQKISKVEEKVDIFCPLLYNSKPEDRVWASEGMVATVV
SGDSSLSLQQRVEDAGFSNVIVTPMGSDRVFLYCTGGADIWTVFNDAVHFFGMLFSDLHRWSSEDIIYERGAWLRIYGIP
VHAWNEDFYNICVSGCGRFIRSDVCTVERARLDFARVLISTTFLEVVNSSLEVVIDGCKYLLKLVEEWGCNLGEDAFLSE
EEQDPRLESLTLKDSASLEDVKGEMNDLVDDLKEEWLNGDDFFAGITNIEVDPSRVPVESDRPDTTFVNLDVGVYKVESS
QNHVSHKPDSCSKELKETSSSLKSNSKLSKRKYKQAGVAVNHSVGFIKRIARLPSKDRKEILKVLKKQDRKRKLLIKASK
AASNSLSNSSNNSNSSVNKDWENWVVLHGKKEVAAEDVKDIGKLLGVNFKGDINNSFNLLSKEGRKEWRAERGTLLLKED
GEGGGKVGME
>SHALINE17_MT_pol#LINE/L1 18-4106 via tfasty with OSLINE1_1, 3 frameshifts and 2 stopcodons. [Medicago truncatula]
VISWNCRGLGSPSTIPNLKYLVRTYKPDVIFLSETMTTSNKIEELKYILGFDFCFTVYRIGRGGGLAFFWNNTFNCNITN
FSQNHIDVEVNDYLRGKWRLTGFYGMPEGGRRRESWNFLRHLSNLSQLPWCIIGDFNDILNADEKKGKSDRQPWLIQGFR
QAVLDAGLADIHMDGYAFTWFKSLGTARAVEEKLDRAMANNSWFDIFPNARLECLTTTSSDHYPLLLDCAPQPASSSGQR
RFRFENAWLVEPEFKPFVSQSWQGYGDHPIMQKLNQCAEDLSKWSMNINQNTRQEIRKTQRKLEAIRSHVDASNVNYFNM
LRNRLDKLLVKDDMFWKQRAKTFWYRDGDLNTKFFHAAATTRKKVNRIEHLEDENGIECRTEDGLKHIARDYFMHLFQKS
PSSRASVINMVPTSITGDDNDMLTATFTLEEFKDAAFSMQADKCPGPDGFNPGFYQHFWNICGHEVYQAGCDWLASGAFP
PHVNSTNITLIPKGDSQTSMKDWRPIALCNVVYKIVAKVLANRLKKVLDKCISINQSAFVPGRSILDNAMVAIEIVHYMK
AKTKGKKGDVALKLDISKAYDRLDWDYLRDVMIKMGFSSRWIHWIMLCVETVDYSVLVNGAQVGPIVPGRGLRQGDPLSP
YFFIICAEGLSSLISDAESRGDIRGTSICTNAPVISHLLFADDCFLFFRACENEAIGMKNILTTYEEASGQAINLQKSEI
FCSRNTPDDLKNLIATTLGVRQVLGTGKYLGLPSMIGRSKNATFKFIKDRIWNRINSWSSRCLSQAGREVLIKSVLQSIP
SYVMSIFLLPGTLIDEIEKMINSFWWGHNSTNSRGIHWLSWERLSVPKIFGGMGFKGLRAFNLAMIGKQAWKLITNPDSL
ITRLLKAKYFPHSDYFGATIGHNPSYVWRSIWSARDVIRHGFKWSIGTGENIPVWNQPWISNVARILPSTHYQVEWPSIT
VAHLLITHQKEWNVELIRSFFDSGTANNILKTPLLPSVTHVDKPIWKFEKNGIYSVRSAYRDILNHDMAIVQHSVPGNWN
CIWNLKLPPKVKNFIWRVCRNCLPTRMRLQSKGVQCPNSCVICDDYEEDSKHLFFVCSKSMLCWQRTGFWSPLIQLTLIS
MSAFQPIxFLLYYNTxISSQKQIFTVTLWSIWKHRNNKVWNNITDTAQDICERAGTFLTSWRKLKIFGILAHQKPSTPND
LKWTKPSAGRFKCNVDASFSHARNRVGIGVCIRDAEGNFVLAKTEWITPLLDVDMGEALGLLSAMQWVKDLQLGNVDFET
DSKIVVDSLYGSKSGVSDFSAIINDCRHLLVSDLVNSDVKFIRRQANEVAHSLAREALRHASFHIHINIPHCIYTIIINE
ML
>L1-2_DR_gag#LINE/L1-Tx1 410-1725 via tfasty with L1-3_DR_gag, 1 frameshift. Named MutsuDr1 by Kojima and Fujiwara gi|34392565|dbj|BAC82612.1| gag-like protein [Danio]
MDGSTVTDLAMADGVEKANDNGLDRRQQETNQSEKEARKRIYLKEATVTVDIGQATEVRAIDVIKAETERIGDGKILAVR
PKHNKEYEVTLEREEDADELMDELTIKGINCAVKRLQNRDYVVSFMHLPVYVADKDILDKLDHWGVCPISKIKRRFYPGT
NIEDGTRFVKTRFPKELASLPYSTRIETAEGPQYFRVMHSHQVKTCRLCLSPDHVVKDCPDFRCYKCEERGHFAKFCTAV
KCPDCNKVLNKCECWIGEEEEEVEQQVGRQMYEGDNIQSEDKTTTQEKSTESESEKLQENETNGIDRVTEQEGTTWTQMD
MTDSLKSVLEAAELSDSNNKDLNQGQQEDTFWTQMDITDSFQKALDTEETKGQSNDEQADLEGHLQKDGNKETQGKSAKR
RRSLKIIPNLETVRKKLLKDEEIECANKYELLKGLEDMD
>L1-1_HM_gag#LINE/L1-Tx1 103-1128 No matches to other gags yet.   [Hydra magnipapillata]
MSKSYAGVLASPSQNGNPKPKLGIFNSKPVEENSYVLVCRYGDLNISINEFLAALAQKDLLTNVWGVTRHYAHKYFEFAV
HNSTLIPLFLKSEIIFKNCVLTFQQKFVRKIHVLVQNIPIGILRSGCKDAITKLGNHLALGRGQFDSFYCQSVKVHGEEI
FTGNVIIIIKNWTNPYANPLPRFENVDGLTLRYKHNGQPESRLKTTEKPTDADTSQGKNSEVVESVKETDEEPSTQSSPK
QTEPEELEVLKSKKAVQKTQNEVVAQIVCDTKESTKPKRKSQNDLREGETPSKQVTPNQTQVMNDVEMEGTCSSEIAEEQ
NNDLIFDYEKYDLIKSAGEKS
>L1-3_HM_gag#LINE/L1-Tx1 18-1002 via tfasty with L1-2_HM_gag, 1 frameshift.   [Hydra magnipapillata]
MASYAGTVSNKINRMECVLDLNVFMNQSEIFNRKYQENRAHEIYQKVSSIVGNNKISSLTYNAKGNWVIEMKQKEDAIIL
NDSTFLLSGSNQNIMFxIRSDIGLLITVKCDPLIDDHEILAEMKPFISELYSITHTTYRFDRNLKDGRRLFRIKPSVKLN
EIPHTIEIEGIKIALHFAGKSFLCKTCQYSHPPQQRCIAQKPIEKATEIVLEKLNRKNRDESVDSITIQNASESKHKHVS
KPSDSKIPLLLPIEPVFEIVKSKKHKRDERKQNQTQNEQNELTENETETDIEDEEIQSKSDKKINAKNASPTTPQKEGPR
RKPRQRAV
>L1-5_DR_pol#LINE/L1-Tx1 1225-4926 named MutsuDr2 by Kojima and Fujiwara gi|34392569|dbj|BAC82615.1| pol-like protein [Danio]
MRMCRFLISFLFILMVLNCVSFNARGLMGKDKFEKIREKCKNKEVIGLQETNWKEHAMNDFKKLWQGDIIYNNGDGKSGR
GVAFLIRKDVLNFKRIVYRDNYGKCLVIEVNYEGHELIIANIHAPTEDKDKKEYFEVLNKVLKGFKEIIMMGDFNTVFRK
QDMADGMVFKSDIGRKQLNELIKENSLIDIWRERNREKREFSRRQIVGNFICQTRIDFILCTRNIENFIENIQYEENSFS
DHKLLHFKVNIENIQKGPGTWILNTTILKNQDYVQKVKEIIENEKENRMYDEDKRIWWENTKYQIRKYTIKYCAVLQRCK
KYTEKEVKRSLEKELNKENKDIEKIKEIEQKLRDLEEDKYKGAMLRSRSKYTVEGEKCTKFFFDLEKQRGKAGILKEIKG
RNGKIAKGNIEILEEIKHFYEDLFKAKGIDEEKERKILNYIKVKLEKHDNKECDREIEEEEIEIAINQLNKKKSPGIDGI
GNEFYIVFKDILKGILKEVFKDIFKCKEMNERMGMGLMKLIYKRKGAKTELQNYRPITMLNTDLKILAKVLANRLKEVMS
KLIKSNQAYAIKGRDIADVTMSIKSTIDYLQEKKMNGFLISVDFEKAFDRVEHTYLFDVLKTFGFGENFINWIKILYKGA
FTKVKCNGFLTDCFKITRSIRQGCPLSALLYSLIAEPLGLAIKQETKIKGIKIEEEEDEGKIYQYADDTTIIVKEKKSVK
EAMKKVQEFCKGTGSKINENKTQYMRFGKADILTDCFQFREVEELKILGILIGKNERKATEKMWDDLIRGIESRLNFWRM
RELCLKGKALILNVLMTSKLWYKLYVTEMPCWIEARLKKCVQDFLWEGKPPRIAYNTIIGATEEGGIGLMDIKQRKNCLR
VKIVKKLLQEENSTEWKKVMKYFLNKVGNFNLGEDILWLKTKNWMTEKLPGFYQEILSAWGKFLDGVFYQVKGRENLLNQ
PLFLNKSILKEGKELFFKKWMDVGILRIRDVLYEFKKGFLTKQYIVDLMEEAKEEYSVKEIENKLETVKGAIPKEWITRI
ENMEECGNEKVIHVYLKGKLCNFKDCLLKDFYVYFRDSVFQEPIANNFWVQRLNSVKKENIWKNMRGKIIETRLECFEYF
IRHKAIFTECILTKIHIEQNATCKVCFQEDEGILHLFLYCKELECFYKKCQKMLKDLLKDWDEEQLEWNTLVMFGWNMQN
KNKKFVNLLIMMIKKCVWERRNVAKQEKVVLNV
>L1-4_DR_gag#LINE/L1-Tx1 171-1547 named DewaDr1 by Kojima and Fujiwara gi|34392574|dbj|BAC82618.1| gag-like protein [Danio]
MDTLVKELELKMDYGSMDKATPENNNSRDSNNGIDDNDTWATVVARRRKTKSDTSREGSGEMQQTKGKANAEHLENSQQS
SHRNEMINKLKSQARFQRQYKKETTLTMTVKDPENITVTMIIKAVEDKTGIGKLFGLRKKSNFDYELTMENETDCDHLMD
GLMINQQFCEVSKLCATERMVSFLNLPNYIQDSEIIQKLVDWGVSPILPLRRRYHPGTTVADGTRFIRVKFPKEVMSLPY
NVKFDTEEGPKYFRVIHDQQIKTCRLCGSAEHEKKDCPQFVCRECLEQGHFTRDCKAPRCQGCKKTILWCRCESDEEETG
VMETNKQMEKSSNEEREEEVQELPPDDLNEQEEEQAMSEEDEGDTADTEAQDLMKDDGHDMEEEQGAAGENTESRIEEEV
SDDDDNEEINIGTKDRTIDSINRRRRKTVQLNIQQVLKKQKLRKEAKAKLKTERTDLRF
>KoshiTn1_gag#LINE/L1-Tx1 gi|34392552|dbj|BAC82604.1| gag-like protein [Tetraodon nigroviridis]
MNKAVVLFLEKVEQVNKLVEMGITVNGLFEPVLPLTQPATRITLSNVPPFISDEFLVNELSRHGKVVSPMKKILSGCKSP
LLKHVVSHRRQVFMILNNRSEEFDYRFMVKVDGYDYQLFATSSLLKCFGCGEEGHIVRACPNRAGSAGAARPGGSAAGRY
GKSGARXRRREARSCGAPADRRPRTAEGAAAEQQGEHGDHTEVTSGGGVEDMVVEGAGEVGEVVDNTGEXVGETGEVQGE
TGKXVGETGEVQGETGEVRGGTDDKVEVAGERVGGRXHSGAPGGLVGELSAAGETIDLIGEVVEIRSETGGRSEMETGEA
AGTQSESAATACASVVDPRVLESVFVFSSASAPAKQRAKPRTCCQEWWRGVRPGGWKARQPSLLSATARQRQTCQTAATC
PTSPLPVRKINIIQKI
>KenoTn1_gag#LINE/L1-Tx1 gi|39652287|dbj|BAD04857.1| gag-like protein [Tetraodon nigroviridis]
QGHPKLCGRCGEHGHLDEACEKIVCGKCRAVGHSFDGGMNGRKCNLCGAGDHLFRDCPLSFANELRAQKRQEENGPKVTE
MVLIDLEENSNLPPKSVIGGEEANEVKLGEEPKAGADPVEGSSEVAEGDQAGGETPPSSTGEGSIRSLHIVEGEHATSSS
PSSSSITDVQPGQKRTASELSTSGGDTASEKRGRAEPGPHSSPVDQDSNSSSSSSNLCSFLNIALQSTPLESRANFAFRR
SDPQDSPPWL
>VLINE9_VV_pol#LINE/L1 2176-5823 [Vitis vinifera]
MRIKILCWNVRGLNDSEKRKLIKGVVRNQKPDLVCLLETKVKEMSQQMVNSVGIGRFLNWASVDARGAAGGLLLLWDNRV
LENLEVEXGGYSISIRFRNCVDGFTWIFSGVYGPVISSEKEDFWEELSAIRGLWEDPWCLGGDFNAVRFPEERRNSLRLT
TEMRRFSEVIGELGLKDLPLAGGPFTWIGGLNSQAASRLDRFLFSDQWEDHFSAITQAALPRLISDHSPIVLQAGGFSSG
KSPFRFENMWLKIDGFQDLVRSWWNGYSVEGSSSHCIAEKLKALKKDLKNWNKEVIGNVSLNRAEAFSRLQRWEXRENDG
PLTASEVEAKNLALEDYKKWALLEETSWRQKSREIWLKEGDKNTKYFHKMANARARKNFLSKIRINEVTLSSSDDLKEGV
CRAYKSLLSEPGDWRPNINGLNFKELGEGLASSLEVVFSEEEIYAALSSCCGDKAPGPDGFTMAFWLFCWDVVKSEILEL
FREFHLHGTFQRSLNSTFLLLIPKKEGAEDLRDFRPISLVGSVYKLLAKVLANRLKSVMGEVISDSQQAFVHGRQILDAV
LIANEALDSRLKDNAPGLLLKLDIEKAFDHVNWNFLIDVMSRMGFGHKWINWMKWCWSTATFSILINGCPTGFFRSSRGL
RQGDPLSPYLFLFAMEALSQLLSRARNEGFXSGFKVGGRGREGLIVSHLLFADDTLIFCDADAVQLQYLSWTFMWFEAIS
GLKVNLSKSEAIPVGECPPMESLVSILGCKIGCLPTSYLGLPLGAPYKSTSAWDAVEERFRKRLSLWKRQYLSKGGRLTL
LKSTLSSLPTYFLSLFVIPKRVCARLEKIQRDFLWGGGALENKPHLVCWKVICAAKKDGGLGXRNLAIFNKALLGKWLWR
FANENESLWKQIISSKYDLQDGGWCSKGVRDRYGVGVWKAIRNGWENFRSHSRFLVGDGTRVKFWKDLWCENQSLEEAFP
ILFNLSVNKEGLVAEAWEEDGAGGSWGPRFNRHLNDWEVGEVENLLSKLHPLAIRRGVDDSLRWKANKNGTFSVKCFYSS
LSMGINHPFPASTIWTSWAPTRASFFGWEAAWNRLLTTDRLKRFGWNIPNRCFLCKNEEESIDHLLLFCEKARMLWYLTF
SLFGVQWVMHSSVKRNLLGWYGSFVGKKREKAWKTAPLCLMWTIWKERNRRAFDDVERNDQDIKSIFLYTFVNWARVYIK
DHTLSLFDFVNWLATK
>KibiDr2_pol#LINE/L1-Tx1 gi|34392563|dbj|BAC82611.1| pol-like protein [Danio rerio]
MFKLLVFLFVSLSLSLFYMEILRVGSLNTNGLRDEKKRNLLLESIRIKQLNVIFLQETHSNSNNEAEWGLCWKGEKVLSH
GTNLSAGVAILFSSALKVQILMINEIELGRLVAVRAKINDLSFLFINVYAQNNGADRLKLFSNLECFLKQQQDGDFIIIG
GDWNCTLDFKYDRNSEEPHMQSASRLAGILKNQYFSDVWREQNASIKQYTWVKINDGRFSGARLDRFYVSNNVKNRVVGA
NIIPSFLSDHKLITVECTLLNRTHKSYYWHFNNKLLQDKYFCETFKSFWEAWKNEKGLYENIIQWWEIGKVQIKVLCQQY
AAQSSGVFKKTIELLEKEIEEIEKSMTVNDAGNLQELWTEKKNQLGSILNEKVKGALVRSRFSTIKDMDGPTSYFFNLEK
KKGQEKLMFVLKDDDGQDTSDPVLMRRLAVRYYSNLFAAETTDEQSRNELLQDIPSLTSTQKELLEVDFKFEEVTAAVMD
LSSGTAPGIDGLSSEFFKTFWTLIGADYYEVLKECMKKKILPVSCQRAVLTLLPKKGDLTLLKNWRPVAVLCSEYKIIAK
CLSNRLNNVLHEIIHKDQSYCIKGRSILDNLHLVRDVYDFAFKNNINLGFLSLDQEKAFDKVDHNYLFETLKAFGFGDSF
ISMVKVLYNKATCMVKMAGGLSVPIEIHKGIRQGCPLSGQLYSIVIEPLLCKLRRWLTGLSVPELDFQEPVKISAYADDL
TVIVKDHSDVHFLREIIEQYGKASSARMNWSKSNALWCGQATNGPMLPGNLQWGRMGFKYLGVFLGTDDFIKQNWEGLVE
KVCARLSRWRWLLPQLSYRGRVLICNNLVASSLWHKMMILEPPRDLVARIQKQLIDFFWSGQHWLRASVLYLPIQEGGQG
LVDIGSRVEAFRLQTAQRLLYGKDVCWAGIACALLKKAGNMGLDRHLFLMDTNKLDLTGLTAFYRSLLRTWSRFKVSREL
GSIRGLWSKEEPLLFNSAMDLNIFKSDSFRKALWSAKITKIGHLVSGGQWINAEALALRLGMRSVRVAERLLIEIQENLP
VNIRLTSEEDVSVFPELILSADTGEWQETEGGLLSFRIPQPSLFEDAGKKTLYTLCVKVVHFHMLESLKESKWQTLFEPD
SSPKGCWRTLYKPPIEKRSGDLQWRIVHGIIATNRHRAHIDPQVMEGCPFCNMGETVFHLFLNCSRLEMFLYQLNGYCQM
LGEVFTPSLFIYGPKYNRNKMHVHVLLNFIFGKAKLAIWLSRKRKLTGLGLTDVFWFLRNLLNPVLK
>KoshiFr1_gag#LINE/L1-Tx1 gi|34392549|dbj|BAC82602.1| gag-like protein [Takifugu rubripes]
MNRAVVLFLGKVEQVNTLVETGITVGGQFVQVTPLTQPAARITLSNMPPFISDEFLVRELSRHGKVVSPIRKMLSGCKSP
LLRHVVSHRRQVHMILNNKADEFNYRFIVRVDDFDYTLFASALFASALKCFNCREEGHLARACPSRVAPDTPAAEPATPA
PAGPVAPQPVPAARRRWLSAEESSAAPDGAVAELRGGGSGTSVSGGSEIVEMVVEMNGESGESRGKVDLTVVVSDLSGVM
IDGVCDLNELEKNGEVMGETEKMGEAGETGDTIQTGKLGGVSQVMGELGVPGIAAGELGEEAVSTGELGEEAVSTGERGE
GAVSTCEGGEGVVSTGDGAVSAGEGASGMSEWWLVPAKRRNKHKCAMKDKGDTKTGQLEDATDGTDTSDCESMSDCSSLS
GTMPDGHENNLYPPSMLKNFLTQTKGMKGLNLEKHFPDMLLFVHSASHLIKHRATSDLTNPEIFRLKKHMGKARKQLKI
>KibiTn1_pol#LINE/L1-Tx1 gi|34392557|dbj|BAC82607.1| pol-like protein [Tetraodon nigroviridis]
MYLFYFILLMCDFNISTLNLNGARSDFKRAALFKLMDIKNIDVLLVQETHSCQKNHSDWRRAFNGEAILSHGSSLSGGVG
VLFARRFLPISFTTDEIIPGVLLKVKAVFENVKLVFLSVYAPTNQVERMAFLNILSDCIANSADEGFMFLGGDFNCTVSP
DLDRNHPEPHPASARALGRLAESRELADVWRTFNREAKQYTYSHSRGMVLSAARLDRFYCFKHHFNVFKKCVISPVGFTD
HCLVTCHVFIKNVRVKSTYWHFNAALLNDQAFKNAFKLFWLSQRESRPAFANIQQWWDYGKAQVKQLCQQLTRGVTKELV
RNMKDLEQQVGDIVSSATPTGNRGSLSTLKSKKAALANLLGVSAQGALVRSRFMNISQMDAPSRFFFGLEKKNGQRKIIH
SLRTGSGSEISDSSEIRKYAAGFYKDLYRSEWSSNPDMQDSFLRGLPQVGEDTNAGLAAEVTLPELHAAALSLQNGKAPG
MDGLPVEFYKSFWDVICTDLLEVVSDSLRTGRLPLSCRRAVITLLPKKGDPQELKNWRPVSLLCTDYKILSKALALRLRE
VMSSIVHPDQTYCVPGRLISDNVPLIRDILELSSSLARQTGLISIDQEKAFDRVEHQYLWQTLAAFGFNPGFVAMVRALY
SDIASVLKINGGLSAPIEVQRGVRQGCSLSGMLYTIAIEPLLHKLRQRLAGVCFPQCPVSFKLSVYADDLIVLTNSQQDI
DVLTNTVNDFGFISSAKANWGKSEALMAGGGLGEGLTLPGGLQWRSGGLRYLGVFLGEESFMRRNWEDSLEKTRGKLEKW
KWLLPKMSFRGRTLIINNIVSSSLWHKLTVVEPPAPLLSQIQRVLVDFIWDKLHWIPQSVLFLPKEEGGQGLVHLASRRA
AFRLQFAQRLLTGPKDTLWRPLSRCVLKRFNSLGQDFSLFLMNTSEISASPLPCFYQSVFKVWGMLLKKRQERAGSAYWL
QPEPVLWGTKLDIPNQMKETITRRMRTTRIANLGQVVALTGPRMGDPSGLAARLGLTSVRVIKKLLDHWRSKLSPHDRLL
LTSPTRTVGEGELFPAIALAPDFKDCNGPLLKNTRFIPLQETTGKTFYRMMVKTLNKQRLNQRADTPWRGHLHLAPDCRP
QWRALYKPPLPKRHADLHWRVLHGIFPVNSFVSTINQTVEDKCPFCDQRETIFHCFYECQRLLPLFSFLRNVFLKCEEFF
MKQSFILGFKYTRHQKDKCQLSNFVLGQAKMAVYLSRRRKMEEGFSVEPVVICVNMIKSRLLIDFNFQKAAGDLDSFIQV
WGFNNVLCQVVNNSLQFGDVLR
>L1-8_STu_gag#LINE/L1 151-2095 via tfasty with L1-3_STu_gag, 1 frameshift and 3 stopcodons. [Solanum tuberosum]
MEDSIYFAAGFKSYDITRTPGTAGAWYDWTERNRKSMTRTTFNEKSMEWIVQILREASMTRGNMVKRWKKKDGFSEVFCS
RNYNKYGRYISLINVKGRRREVIIIPELNFNSGWLSFAEKVGRFINSRRKLMNGGNHRLVSRDIPYATVLRSIKWANKDS
KLAEKEKAALKGDTIFINDDPEEYSEVLKRSLVGAFEPRAGETVTLSEIRGWANRLWKQTHSLNIYEMGNDFFLFEFALR
VTAEQVIEGDWEWRNSPVILQWWNPTIGTRCGRSKENSTWVKIVGLPLHFWDQKIFKVIGDFCGGWVETEEETQLRNHLK
WARIRIKGDGADIPKEVTIDGGGICYTMQIWAESPVRVFAGEDLNSEISTQRSRGGKPLGKGEVLCKVKKxLLQQAEHML
CQRQVGSPPSQTKxWAGASPTQNKAQFxDWGQNKIKRGAWSIKSLTWQVKSENQGEFLEGLSGIKELAMQFLQAYNKWET
SSMVENTDISAKNREPVNKTKEAVELLCNKAKGIDHSKDFGEISGVQELVEGGMQIQQIHDAEPVSIQNPGYHTDSEFEA
SSWIKSHILELSKTYGVAFEGFREETHALLMKLDERKSVMEKKGANSAVSTPRHRGIGKNELKNLQSDLNEEVEGARNRG
RVLSLTLK
>Ag-Jen-11_pol#LINE/Jockey 1276-3883 via tfasty with Jockey_Ele2_pol, 1 frameshift and 2 stopcodons. [Anopheles gambiae]
NVLLKIIHWNANGISSKKDEFFNYLLKKDIHIAAISETFLKNGTRFSHPNYHTYRLDRTQGEKGGVALVISKAINHEVNS
DYKLKVLEAIGITIKTQNSKVTIISIYNPGSNNDHSSFRKDITKLSKISNHFIICGDFNARHRFWNCSKANQMGKTLFEE
NQRGKFSIVHPEEHTHYPNDPNRRPSTIDLLLTNKPEKICNILTIQKFTSDHLPVYFEYNIGLIQNKHISGIPNYSEANW
TLFKEILNNRLNTNNLNLQNINTSNQIDQMIKYFSKLINYAHTKSVPFIIPDKFKITLPPNILQKIKHRNATRKQWQKDR
NNTILKTIITHxKKEIILDIKNLRNQSWTDNLEKINNDPSKSRLWKFVRIIKGNSSFIPPxKANGKCYITNNEKCEILRD
HFEKAYRTTFPNQSPIEHHIQETNSRFFSYHQAQPSNNFDPINFIKPKHIKNIIYKLKSKKSQGPDQINNHSLKQLPKKA
IVYLAFILNACTKIHYFPLEWKIGKVIPIPKLKKDHKDPKSYRPISLLSCLGKIFEKILHKKIIKHLNQHTIIPSYQYGF
QPGHSTTKQIDRLTTNIKTQRNIKKSTGFVMLDLEKAFDTVWHQGLLYKLISFNFPPNIIQLIQSFLSDRSCFVQITSSK
SNDIHPPAGLPQGSVLSPVLFNIFTSDLPKTKSVKKYCFADDFAMSSSDSNPKSIIKNLNNGIKKYVTFCKTWKLKINEE
KSEAIFFTRCTSAYKLPDRNLKISDWDIAWKDNVKYLGLFLDKRLTFRKHIEEKVISGSRLIKNLYSFINKNSKLNLKNK
LLLYKTVIRPTILYSSKIWANCANVHINKLQVFQNKFLKRVLNLPPWHSTFDIHRITGFELVKNFVRNT
>55236006_Aga_pol#LINE/Jockey gi|55236006|gb|EAL39201.1|  ENSANGP00000026167 [Anopheles gambiae str. PEST]
KSYRLISLLPSLGKFFERIILDRLQSWESNLIRPEQFGFRQEHSTVHQLLRVKSCIEQNKADQNSQLLDVAKAFDSVWHG
GLLHKLVDFGLPVYSAKIISSYLKHRTFRVSLDSVLSYPNPVPAGVPQECLLAPLLYILYTMDIPPLPCDGMLFLFADDT
AITVKGRSDRTKKLQRCLHIFLRFAADCRIKINPSKTQVIVFIYRFKKTLTPPLIRGLIVDGTTVPWSPSVKYWGLHVES
VLERGHLLLKCLYPLISRRSRLTQSNKLTVYKHIILPVATYAAPVWSTCAEAQLCRLQIVLNKLLLMIT
>BS2_pol#LINE/Jockey 1695-4553 (BS3_DM_pol only fsmall fragment and 88% similar) [Drosophila fruit fly genus]
FFALDSREANGINDDDDEATATTVTSAGADYQSAHCSPSASSAIMMPLRILVWNADGVSTKLPEVECFVRRHEIDVLLLS
ETHCKGAETPKLFGFVAYTANDPSGGNAKGGAAILIKNSLAHFPLTPIATAKVQLAPAVIETALGPISFGAVYCPPRFAW
TTDEFKDILEEFQTKFIVAGDWNASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYPYGCRGSPGYIDFALTKGV
LGIHANISAVVELSSDHLPLVITLDAGAISYPKMERLITRRTNLEVFQSQLESTLPLNTAINSGQDVDDAIELLTNNIKS
AARLATRSISRQPAADRIPIPREILLLIAEKRRLRTRWMRSRHPSDKTEWNRALSRLRCALVLHKAAWFDERLANTGVES
EATHSLWKATRAIKRRCTRKAPLVDSNGTWCRTDLGQAEVFAAHLAERFQPFKLASLQQVEETQDQLNQALQMDMPITPF
EPCEVAEVIVRQSNNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQWKLGIISMIHKPGKPEREPASYRPI
SLLPSISKVFERLIAVRIVSIMEAQGITPEHQFGFRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRVWHIG
LQLKIKQTLPAPYFGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLYGKSMLATFAD
DVCVTYRSRCEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNVCFTLKRRTPPPVYIEEVPVPQPNAAKYLGVLLDRRL
TFSKHVTDIRTRLRAKVAKHYWLLSSRSKLSLSNKLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCE
WFVRNTTLHRDLKLATVFDEINKHSSRYHDRLERHRNRLASALNRSRPPRRLNRRQPRDLITRSPLTRVRRS
>G3_DM_pol#LINE/Jockey 1982-4504 [Drosophila fruit fly genus]
MLIIHLGGSAVIVKNTFQYKQIDNICSNIMQVASIEIKCMHSNISIAAVYIPPRHSWKLDEINSLFRGLGRHFIAGGDYN
AKHSWWGSRLVNPKGAELYKCITNNKYSTLSTGKPTYWPTDLSKIPDLLDFIVFSGLPASNFQIEENFDLSSDHTPIIVT
YGTTVCFKQKPYRIINAKTNLGAFKNWLEERICLNVSLKSGEEIESAIEALTNSIHAAGYMFTPPPNESTSRQTFLPLEL
RAQIAEKKKLRKIWQTTRSPIDKRKFNKAVNNLNSRLWEIKNEATAEYLRNLDPNTSDLYYSLWKATKYLKRPTRRDTTI
VNSTRHRCTSNAEKTEAFAEHLSSVIQPNLENDPETVAEVHNFLEAPCQMSLPINQTTISKVEEEIKELNRKKYPGYDKV
CAITIRNLPPKCIRLLTHIYNAMLRLEYFPSQWKCAEIIMIAKPNKPENCTSSYRPISLLGTFSKVFERILLRRMLPALD
ELNIISEHQFGFRRGHGTIEQCHRITHAIVNALENKNYCTGVFLDVKQAFDTVWHEGLLYKIKKWLPAPYFQIISSYLKN
RIFYVREHDEFSSIYTAEAGVPQGSALGPVLYTTSTADLPTTNAVEIATYADDTAIIATSNDPRVASNLIQEELGLIEAW
LKKWRIAVNAQKSVQVTFSLRPGSCPPVTLNGSTIPVSETVKYLGVHLDRRLTWKQHIKAKQTQLKKKPKKMYWLLGPRS
QLSLENKLRLYKAVLKPVWTYAMQLWGTSRNSNIEILQRYQSMTLRTITGAPWYMTNHDIHKDMELPLVKDEIKSNAERY
ISKLHDHDNVLALGLLDNTSNRRRLKRFHVLDLPYRFTNR
>BS4_DM_pol#LINE/Jockey 25-726 [Drosophila fruit fly genus]
MVRYTDTYSAPCQMLAGVPQGSVLGPLLYSLYTADLPRPTYENAQYPSKAIIATYADDIAVLYRSKCRIEAANGLQGYLQ
TLSAWSRRWNMKVNPLKTFNPCFTLKRLATPAIQFEGVTLEQPSQAKYLGITLDKRLTFGPHIKTITKRCGQRMQHLRWL
INKRSTMSLRAKRAVYVDCIAPTDLKDWDSARRFVNRPALPKPASNPRERFGSLRFVFICVVKMLIRMHGFNA
>Nimb-3_DR_gag#LINE/I-Nimb 38-1231 [Danio rerio]
MAEGSVDSGSDPEMEEERVDGDSGGNASNEWSVVENRKRKKSWAQISESDSEKGSHQARRRREEYKVMLKFASDSVNTIN
PLKLTKTLKEMLGTIESVKTLRDGKMIIYCKDHKQQKMALAMKTLLGHKVICSIPEEKKWIRGVITGIPTDVTVEKIKRN
ITGAAVKEVKRLKCVRNNEKVDSLSVMIHFDENKLPERVYLGYLSYNVRLYVPPPIRCYKCQKFGHVAAVCRGKQRCARC
GGDHEYGKCGQEVKPRCCNCGGEHSAGYGGCQVRKNAVQVQNVRMSEGISYAEALKKVKQTSREPETRVTESQQKATMKE
QNKDNEVCIDKVSFVTFIAEVVNCSAQTESRTERIKIIIRAASKYLELEGVTVDMINDRLKIQSGTSQTVYSQPCGSI
>I_Ele35_gag#LINE/I 336-1775  [Aedes aegypti]
MMPVSATSPRFRDPGGPGGGGPSNMFRGDYAGQLVPFHMDNDGCSGAIQVLQMKATEGKLPCDPFLLRFSIEKWIGKAID
GAFKENQGISYALKVRNTAHFQKLLKMDQLADGTKIQIMEHPTLNKRECVVSNYDCVDLSDEYLLEQLSDQGVRGIRRIK
KKNPDGKWVNSPTIILTISGTVIPDHIDFGWSRCRTRNYYPAPMLCYKCWEYGHTKKRCSQPHETCGVCSQVHDAGSNMD
PASRINESTVETSRSPPCTNSAFCKLCKSNDHPVSSRKCPVYLKEVQIQHIRIDKGYTYPQARREFESMQENHNSNRDSF
AGIAAHSKDKEISDLSDTVRRLIEDSRKKDNRIAELEKSLQGRSTTYRMDQVKQHGTIEDLIVKVDQLSRNVTELQDIIK
KKDLEIEYLRKIYVNPTESQLNSTLNVTIPETQDMTTDSTSQIDAYDSIPDNKLTSQCLDWINQSGKNPKKKKKSSKNGP
>I_Ele28_gag#LINE/I 688-2436  [Aedes aegypti]
MSASSPPLNPGDPGGPGGGYQRNRKNGEYTDRLIPEFLDREGNAGQLQFLRMKAKTGAIPNNPFLLRLSVEKHVGGQIAG
AFKENKGISYVLKVRSQAQFDKLLTMSRLADGTEISVEEHSNLNQVKCVVSNADTIGLEEGYIAEQLREQKVKEVRRIKR
RNRNTNALEETPTLILTISGTVVPDHIDFGWSRCRTRNFYPNPMQCFRCWSFGHTGKRCTAPARVCGRCSKVHQEDQEME
TANEQGTTNEPTPRRVCTEPTYCKACNSAQHALSSRECPAFRKENAIQIIRVDDGLSYPQARREFEAREAQKERDQGRNS
YAGVASSSKDAEIAELRGTVKRLENEAAKREQRMADMEQALAYRPISERLETAKDHGPIEELIRQVAELTATVRQLQADL
KEKDQIIAEMKEKQQVTPRNSMTTPTPIPQSSSPYTTVSSVECLPNFADPTMTAQVAEWVRNNVAAKKEKMANEKKRVVP
KKQRKKSNDKQTALLQDDQSPHMSHSPLSRIGKESEFLATNMELDDSDNSLKSVGTATSSAAGSKRIHSISSAESSINSA
DEVRITRNKTRLPRDTAADISMQ
>INGI_pol#LINE/I  gi|18413532|emb|CAD21860.1| H25N7.03 Nesr-identical to 9-4982 of the INGI consensus in RepBase [Trypanosoma brucei]
MPATSTWCQGPVPRIIGGSQEPAAFLSWGTLLCSGYGIIQHRDQQRLAGTPSFICRSLGTCQRAISSIIRTKMLLSGDVE
ENPGPSLRGMQWNCAGLSQGKRLALHKTLVDERIAFCLLSETRMTPGEAACFSVAGYQHHGIARNCKGGGVSILVREDLP
VETGMAVIGRIEQVHATIHLARGTALTVTSAYIPPKHTFTATDLDTLLTTDGAQLIGADANAHALAWDRASPPNTKGETL
TQWCIDNQFLVCNTGECTRYARHHGESTPDVTLSRNCTVYTWTSLYSPDSDHHHIFFDVIVGDDTDALSCPRLRKPMYAW
LKANWRNFRLKVDELCRKIGREKNVNTLEQKLSSAIRIATKVSVPRGCRATPPHWTPELAKLDEEIAGCGPSHRREKLVA
TRKQILDRTTKKRWSTLCSRLAVSDRCSWHIVKKVYAPRPLTTPAVLVDNAAITDYRQAERFSKLYSSRARRHPDSHPPA
PIKTIASEFSPITMAELRRSIKLLPSGSAAGPDCLYNEALQHLGRTALNVVLRLFNESLRTGVVPPAWKTGVIIPILKAG
KKAEDLDSYRPVTLTSCLCKVMERIIAARLRDTVESQLTPQQSGFRPGCSTLEQLLHVRAALCRPTHQYRTGAVFVDYEK
AFDTVDHDKIAREMHRMKVSPHIVKWCVSFLSNRTGRVRFKEKLSRSRTFERGVPQGTVLGPIMFIIVMNSLSQRLAEVP
LLQHGFFADDLTLLARHTERDVINHTLQCGLNVVLQWSKEYFMSVNVAKTKCTLFGCIERHPFTLQLDGERIGADRTPKL
LGVTFQCLQGMATHAAETRRKMDFRLLQIAAISASTWGPRRQVLRAFYLALVQAHTMYGIEVWYWDASERSRDLLASAQH
KASRIIAGIPHGTRKEDSLLEANLLPLKTTTLVRSMKFMLMCESRGGCLRRSAEEVYHSKHPVRALHSRIMRSYPHLRIE
PREHPLETSTLRHSCRPIFHTQIKPVCAGDPDDVKREASEKWIERHFARRGKEPPRREHYELWTDGSVSLGEKSGAAALL
YRNNTLICAPKTGAGELSCSYRAECVALEIGLQRLLKWLPAYRTTPRRLSIFSDSLSMLTALQTGPLAVTDPILRRLWRL
LLQVQRRKIRIRLQFVFGHCGVKRNEVCDEMAKKAADLPQLRDTWIPDIIAYAKRVLRSEEVHENTHRFGITGNHFPTKH
KEELTREEETALARFRVGSSRHYGWMLRKINPSVPPQCRWCNPQHAEIGPTIQTAPTVATRTLQRTSEPTKCTECDATYQ
CRSSAVTHMVNKHGFVRADALRRIKYGDATPAVDIPPEPPPVVAIVPLPSSTRVPMRPQVLHCTICASKFAVPGRLLHHL
RTIHGIGSGSCRVKRGRENEDSVQGDGSVPAAPAPQDARKLPFQCDLCEASFGTRSSLSLHKKFKHKSIVTEDGTVVLVQ
FPRKRAREGNVDVPGKGEVQCGVCQKVLSCRDSLIRHCKAFHKGEGVELKCSKSTKLCATDSPHTNTSMLVCPTCGRQCA
SKTGLTLHQKKMHGMKVERAVTSQRGDCEETSLHLMSCPGLKELRVRFAVEGECVQDVCFSKRLAQFLIAVERSRPQVKS
SPKVTVIQPTLPSATSPLIAECGASRKSTGRRNSPDTLRDRGGMQSTSNRNRKRGRE
>Loner_Ele1_gag#LINE/I 675-2033 [Aedes aegypti]
MDESDGGDTPPRDLVARTRFYQPSSAGPWVVYFRRKKKILNVLSISRELTRKYPGTVIHQVKESKLRVTAPSYKAANEIA
QHEAFTVEYCVYVPAREVEVEGKIIDASLTCEDIKTGKGVFENRSIPDVAILDCKQLQSVSMEGNKKVFSPSASFRVTFP
GSVLPKFVCIDSAFYPVRLYVPKVFNCTNCKQLGHSASYCDNKPRCGKCNQAHLEDACTQEAEKCSYCREELHDLQKCPA
YKRRIRNESRSIVKRSKKTYAEMVKSLNPSAKESSSAIPVGNSFQELSSDEANDDETDGGDSSEVHAPGKRKSQSSPGLR
RKVMKSSLKSLPNSKGGGANLKLPKKQVFDASVPCCSKDLPPPPPPIKYTSKRSSRQDSKKKATEVPRSSSKTPGAKRGL
ITFTALVDRICNALGVSDSFRGILDLFLPAIEEYLRELTISWPLLASIISFDG
>IVK_DM_gag#LINE/I 108-1511 [Drosophila fruit fly genus]
SLSSYLLDLLINAYVQIQKHSISINLLTMAPGPLNLGDNRFASLSVSPKAKKKRPFQKLQVDFPDLPETQCKNPRYLVVS
SKNSPKTISDYNCFAVHRALKYISKDITSISNLRDGNLLLLVNSREVSDKFIKVTSLPGLCDIECKLHNTLNFVKGTIYA
PCLINIPENEIVEELKSQNVHSVFKFTKMIDGTPKPFGKILVTFDRFTLPSKLTVSWHTVKVSEYIPNPMRCKSCQLLGH
TSKHCKNPPACVSCNLAPHLPVPCTRIFCANCTGEHPASSPECPQYQTQKQLLHIKTSKKCSFHEARTILKQQQNTTNNP
TLTYSTVANQSTASVMLVKKSRNPNTITNTDLPTSSTKVPAPLSPTYPTSRTNSLNLEENLTSSPSTSAKTDFSYLSPTS
KLKTCMERSRSLRAEANALLGQTYNDDNNTLMTSRSNSNESIASQTSNLQTKINTTDSDDTMDDPDS
>G5A_DM_pol#LINE/Jockey 16-2730 [Drosophila fruit fly genus]
MGPLRIPTWNSIGASLKTNEFLALIELHDIDILLLSEVHFSSRSNFRVNGFTLHTANHPDDSQHGGAAILVGSNISHQPF
ATLSQNHIQAVVIQLTASRGNFNVASVYCPPTLRWTDAIVGQFITQFGTKFLAAGDWNAKHRWWGNYRMRTRGRVLYSAL
AEEGIDIVATGEATCYPYRATASPSAIDFGISKGFRQQQIKVQLLSSDHLPLLFELDEDAQSFRSVTKMLSPQANIRIFK
EHIEATVELNIPIDTCSRLEAYVDYFTPAIIEAARQATPTPHQARLTAIRRPPILSIEARDLLSHKRRLRRRYIATGDPS
IYQQYSSTTNRLRRLLANNRKANLDTLLEGAGPDSNSGFSIWKLTRGIKRQPLFQSPIQDRGGLWLKTDDEKASAFASHL
SSTFMPFNLTDDTNREAIANFLDTPTAPTRPIRHTSPQEVMMQLKALQPKKNPGYDGIDNRTAKFLPRKGVLALVKIFNV
MLRLGHFPRQWKRARIVMIPKPGKSPTQIDSYRPISLLPTFSKVFERILLTRLMELPQVTEHIPQHQFGFRKSHGCPEQI
HRLVKHITHGFEHKLYTVGVFLDVKQAFDKVWHEGLLYKMKDLLPAAHYAILSSFIADRTFDVAVRDSRSSMEHIHAGVP
QGSVLGPFLYTLYTADMPTPVNNTDEASPAQLILATYADDTAMLASHSSLQFASNAVQEWLHAIERWTAKWNIAINCTKS
ACVTFTLRPQTCLGLLFDGNTIDYVSSHCYLGVHLDRTLSWKAHITAVRAKSSWKLKKLDWLFHSSKLHMATKALLIKAI
LGPTLTYAIQVWGTASKTQLNRLRVIQSRAARHASGLPWYVSNRVIERDLKVVPLGDQINFHSSRYADRLSAHPNTLAND
LVDPISLRRLKRIHPHELLTRKIV
>Jockey-2_DBp_pol#LINE/Jockey 38-2860  [Drosophila bipectinata]
ADAGKCRVQQGFQRASPGSYCAIAEMIQPSLNIGLWNARGLVRVSEELRLFLSAHNIDIMLATETHMRAGQHIYLPGYLI
YHAYHPSGNSRGGSAVIIKDSLSHIPLPSVSSNDRQIASVQLQTSEGNVRLVAIYLPPSETWVQSEFESLLAEFGSKFIA
GGDYNAKHAWWGNSRACRRGKLLQEVIANGHYQVLSTGEPTFYSYNPLLTPTALDFFIINGYAIDRLQVRTIHELSSDHT
PIMAILHATPERKPQRSRLLARGANLNAFKVHLEQLSEVSIEIQEPSDIDNAISLFMRMINQAAEIAAPSNHQHTETSIH
PQLPPRIGALLNLKRRVRREYSRTGDVRIHQIYNRLANCLSKALARRKQASIDRFLENLDTDASSNYSLWRITKRYKAQP
TPKSAIRNPSGGWCRTSLEKAEVFANNLEQRFKPYEYSPESIRRQVEEFLESPFQMSLPANPVSLTEVKDLVGKLSPKKT
PGEDLLDNRTIRLLPDQALQFLVTLFNSILTVGYFPKVWKSANIHMIPKPGKSPTDVDSYRPISLLPSLGKIMERLILNR
LLTLENVTSAIPEFQFGFRLQHGTPEQLHRVVNFALEAFEKKEYAVAAFLDIQQAFDRVWHPGLLYKAKSLLTPQLFQLV
KSFLEERTFHVSADGYKSSTKPISAGVPQGSVLGPTLYSIYASDMPTKTPITEVNEQDVLIATYADDTAVLTKSSSILAA
TFALQEYLDAFHQWATNWNIRVNADKCANVTFTNCRSTCPGVNLNDSPIRALPAYKYLGVTLDKKLTFGRHITCIQNSFR
TKVARMSWLLTPRNKLALGCKVQIYKSILAPSLFYGLQVYGIAAKTNLNKIRVLQAKTLRRISGAPWFMRTRDIERDLNV
PKIGDKLQELARKYMERLNEHPNSLAKKLGTAAIRSADPINRVKRRLKRHHPQDLPNRILT
>Jockey-1_DT_pol#LINE/Jockey 2238-4958  [Drosophila takahashii]
MSQIGLNIGVWNADGLANKALELDLFVQSHNIDIMLVSETHFCSRSYYKLHGYVIHQATHPAVRKXGGSAILIKSCLQSY
QCYSLQSPNAQCAAVKVKADLGETTIASIYCPPNFQCSADDFEKLFDDLGPNFIIAGDWNAHHRLWGSRNSTTRGRALAE
FVRRSNVQVLATGGPXHYPYSQRTPTAIDFAVYKGIRPESLTISESLELSSDHIPLIIKFGVAAQKXCHRPRILPRNANI
PRFQAVINRLVNLNMVLSSPDDINDAVEMFARNIHIAAESSTNGQVSNPSNRPQALLKPEVMDLVRLKRSLRRRYMRSQD
QVDKRAYRRAEDELKKLLHETKREYFDDMLLNADTTKPYGFNLWKLTRNIKRQPLRKIPIRKADDTWCKSDPEISLAFAD
ELEKRFQPFDLARPEDVEETLAFLNAPSPEALPIQHVSPEEICSHIQKLHPSKAPGFDGXDSRIAKALPKKGILFLVLLF
NSMLRIHHFPSQWKCAVITMIPKPGKPENLVESYRPISLLPTFSKIFERIILSRILGVRSVQDAIPDHQFGFRNHHGTPE
QAHRLVQHILNAFENKQYSSAIFLDVKEAFDRVWHEGLLHKLKTLLPTGLFLVLKSYLLDRSFMVEVRGERSSLRFSRAG
VPQGSVLGPVLYTLFTSDLPSINAPDTLLATYADDTAFLVNSTCRIEASRITQEFLDSYGKWTNRWNIAINGRKSQHCNF
TLRGQILPTVELHSTTIPQSPQAQYLGLILDKRLTWKQHTTKIAATCRAKLRKLNWMLKSTSKLSLANKVLLFKTIVVPS
MTYCIQLWGVASDSNVMKVQRVQNKALRTITNAPWYVRNVDLANDLHMPSVRDQINRHSSRYNDRLTGHPNHLAASLANP
LNRRRLKRRHPGDLWTRGRHVSRVLKQ
>Jockey-2_DPer_pol#LINE/Jockey 3001-6240  [Drosophila persimilis]
MYNNNPSNSTRHHSNLKIVFWNASGLRGKTAELAAFACRHEVDVLMVSESHFKNSETFSVNGYCTYSANHPSGTGRGGSL
LLIRAGILHIALPNIATDHIQCASATLTLPDGGRLVVSSIYCPPMQEWTEEDFLALFGQLGPRFVAAGDWNAKNSWWGNA
RACRRGGKLLRAVQESSCNILATGSPTHYPYNTRHTPSAIDFAVYKGVRDELLHISHLNDLSSDHLPMVIQLSMSPAEAV
NRRRLLPPGASISRFQSWLDSHIHLNTELRSAEDVDDAASILERNVLEAAEHATSGLRRPVRPRVQAEYQVSNRIRLMIA
TKRRLRNMLKRNHDPAVRQLYNMLANRIHKELEADKARRADAIIGSIDPTDRYSMAKLWRLTNGLKRQPAANLPVRKFCA
DGEDNADDPWCKSTEEKAESFARHLEQRFKPVLTSAAADIRAIEESLEEFGSPGPNLRFRAITLPEIEAQVKVLKLKKAP
GMDRIDNRTIKALPKSALLYFALICNSSLRIGCFPNRWKHAAVSMIPKPGKPADKLASYRPISLLSGLSKLFERLILTRM
MEADGFVEAIPNHQFGFRHVHAAEHQLGRVSKFILSTYENNLYCSAIYMDIQEAFDRVWHAGLKHKMKQLLPAAIYRVLS
XYLDDRSFYVECTGGVKSGNKMIAAGVPQGSVLGPVLYNLYTHDMPLPRDRGMLLATYADDTAILATGMNQLMATQKLNR
FLXSISNWAKQWGITINASKTVHIVHTLRTIQQPVDDLQPHIADQRISSVAVHSYLGVKLDAKLQFHPHITNVVTKVRAR
VQKLRWLLNTNSKLNLNTKVMLYKQMIAPIWQYTLAVWGPLATSAEFGRIQVEQNKTLRLICNAPWYVRNDTIHRDLEVD
TVEAVYERACKRYXEQMRSHHNIEAAKVVNDPYVPHRVTRPRYSEYLSKHLPKELAKHEWNRIEMIPNQRPYTEEDQISH
DRNLDEMRRMLIRMDRPVSPPXEYNYYTEVILPRRRLLEPAPIATIDLTVSSRRQRLERLGLAMDAALNEIADTHSRHSD
NGQVNGSTHTHTNTNAQENQPPPATGTRSTENNSQNVQQQ
>Jockey-3_DPer_gag#LINE/Jockey 362-3145  [Drosophila persimilis]
MDALAPNLTTNNMDVMDAMDNSARAEAGGECVTQNSATDIMTRPLGGNPSANASLFEPMFDSEGDADLAELETDSPESTL
SSLGATVLEFERRFVDRGLYVRKYPPIPPKTDANIQEKPPSNTRTNTQTKIVPSESATGSKNSGAFALTKEHLSAHKQNK
NKCYAHMFSRQNISENKNKQTTHTSIRESDACALSAAEPLAHNQNGGSSHQAPKRLPPNMHSHTYDKKRDACSLPPNQNT
NTYKNEASLTYANNKTQTNTHTSRSRKCLLPTLTQADEHNTQTRPSTRTQLVKEWLISVPPLLANEMPSPLPXTPIAKDK
LTTNSFRSPLKRRCAAIETDTXDDDFTCLTLDTPMFKSQFAKRLHHETRQMESDAGQIRXPSNSVVPVPEAQHREPQRIE
AESQQMETDNHQPQHQPXISINITPVQXSLRSTKVPTIFLPLVPAILPLINKLTTNPNVGKFTTKSMANSGLRVHCDDII
TYNAIQNALAEDSTQLHTHQPRSERGYRVIVRHLHHTTPSSWIXEELERLGFTARFIRGLKHRFNGRPLNIFEVEIQPKA
DGGHEAILDIKNLANQCVSIVRQAKPRDPAQCHRCQEFGHTKNYCRRPYKCMKCAGDHPTTACRKPRQEDPKCANCSGKH
VSCYKGCAAYKKARSQLRANRLIGEQQYQQQRQQPQQQTEQQRPQQKHNKHQRTQQQQQHHQQQSQQTQRQGRQQQQQQP
ATISGSGRPSYSRVVRSGTTEQEQQQQQQQPRADNHQQQHRRPQQQQQPYVRTVEQQQPSQRKRPQQQQHQRQQRARVVQ
GAKAAPAPTPIAAATPNTRRPLYSRGAQANPAENHLAKFQQKLRDEQQQHHHQQQQEQQKTLPANFQSHAHKENAEFLSR
LEAKIDSLFSAIVKLININTNKTSKTTNSSSPNSLDMALSSANDAFYV
>Jockey-3_DAn_gag#LINE/Jockey 73-2577  [Drosophila ananassae]
MEDTRTEIQKEMDNFNLDNIEPFTSLDSFEMAMICRPYGGESTEKIELSSPYSGRHPGSSLQSSDDSCVIVCDANLRTPP
ADPSSKAKSPPKINTNKISHTHTHTQPDPLSLYDPSSKEKSPPKINANTHTHTQPDPLSLYDPSSKAKSPPNAIDKSNKT
TVPISTHPHTLTQTQPHTHTAPLSSPLPMGTEIGAKQCTQAHSQTHTHYTPLSSSLTTGPEIGANIEIQATKTLASALPK
KTTSPTADREPPVGSNTAINKNNKRLLSSSPTTLTNDIKRANREFEHVAPKLDQLAHPNNNTTKNNKSPIKILSDELLRN
FFSQLKDSDANPPPPNAPKTTYSQILQQEPEYSSPTRPAKLATMNQSSKPAPKKPTPLRASESSSADMGPVVFNVKATVH
TTPNHNPQGPALMDVSSPFHYKPEKTPVFKSLYAQRLYMERVEARAEANRVKGNGAREGAQINGNSSNKNNNIKTPTAMA
PPIVPLRKPPVPLMSLSLPFRPPTNALALAQCHRCQKHGHKKGSCRRAFVCMKCAGQHPTTACKKPRHVPPRCCNCGGRH
ISAYKGCRVFQEVKRRAAQDTLRPVAPPERQRSHRPLKKDVGPSQNRNEPSNNNYWTILQNDEMTPTPHHPIKQRPNKDP
RHHSTRQLQKSPHHRSRMAQTNPDRRLNQQRQHPTEQRSNYNPFRQQRRPNPAEAHLARFQERLQLEQEGKERSQRLRGQ
GWPTPQESLIQKRTGAALKNSRQSSVKSQLHWHKLLEKLAFTHEAAQSKLLEKVASIEKKINKLSTLFIKITNMFDITEA
SPDNDFLANLSCSIQTIEMASILNNSLDANDCPYA
>Jockey-1_DF_gag#LINE/Jockey 215-1855  [Drosophila ficusphila]
MSGEQNNERRSSVNQRNACYAYFSTRDTEVEKTSTKSNPALLAVESTRARSLSPALLIPTPTSWSYQCQTPPPPASMGDA
PTTSSASISTTSAKVTATTKATTNIAKTVSTAPSQTATATKTVSFDKQQAVPAIQTGMDRYIQIKRKLSPQNTVGNKPKI
NRTIQAKEKTRISNNSNRFSLLADGESQAEPEQVTQKKPKPPPIYIREKSSNALVNKIVALVGDENFHVVPLIKGNIHET
KVQTKYEEHFRAVSKYLEETKKNFYTYQLKSSKGLQVVLKGIEPDVAPSEILEALKDKGFSAKNVSNIINKNKKPQPLFK
VELEPDSKTLKKNEVHPIYKLQFLLHRRITVEEPHKRNGPVQCTNCQEFGHTRTYCTLRSVCVVCGDFHNSAHCPANKED
PHTKKCGNCGGNHTANYRGCLVYKELKSRMRQATATRQQNTQNVYFKSKTTPDVFFAKAARSSFGPLSTTNGISYADALR
TGMEKPLQPHSENAQQVPAQPQSNLETMMFTMQQSMMEFMSFMKATMQTLVQNQNMVMQLLVSQQSK
>I-1_DR_pol#LINE/Jockey 1238-4990 [Danio]
MGWSCIMVIFILQWNARSLISNGQEFKKYIDDLNEKPDIVCVQESWLISRLEFNIKGYNAVRMDRKIGKGGGIITFIKKG
IQYREVKRGNELEYVIVEVWSSEGNIKIINFYNPCRLLEREQLEEIWEGINGKIIWCGDFNAHSTLWGNRNDNNGRVIEE
FIEEEELVCINDGTGTRLNTARGTESAIDITIVTKDIADRCEWEVLRGNTVGSDHYPIKTQVGIECAKEIEVREEKWILE
RADWDKFREISEDLLQKIEDNLDVENMCKRISGGIIEAAKMAIPKSKPKIINKIVPWWTKECRKAIKERNKAFKKMKTTH
NFQNLMKYKQAQAIVRKTVKKSKKEYWRQFCESIGRTTPVERVWGMIKKMKGNGKEYGYPMLMDGQRVIINNKEKAEIIA
RTLIKVHSTDNLSQEEKRGRVETYERYQFDLGKDDGDQVLNINFSGTELSRALKKLGKTAPGRDGICYTMLENLTDKGKE
VLLKLYNKIWEVGVIPKEWKKAVIIPIKKPGKDPKQPTSYRPIALTSHIGKTMERMINDRLVYWVETKRKIGNYQSGFRK
GRGTMDPILRLEDDIKKAQVNRESVIAVFLDIEKAYDMLWRDGVLIKLNQIGVKGRILRWVKEFLSERSITVKINGTFSE
CYSVENGTPQGSIISPFLFSIMFDGIFKEIENNTGVALFADDGAIWKRGRNITFIMKKMQQILNTVQEWTVKWGFRISQE
KTKAMLFTKKKIREDLKLKLGGKDLENVESFKYLGVWFDRRLTWNTHISKMVDKCKRVLNVMRCLCGVDWGASRVALKSI
YTGLIRSVIDYGCMVYGSAANTTLKQLDVIQNQALRVCCGAMKTTPVAALQVEMGEMPLHLRRDQLEVVYWANLKGHNEN
HIAQTVLMQCQEREKRGIKGYGWTIQQKINDMEIDTIKISPTIVFPVVPTWLLDDLEVDFEIMKEKQENEIDSKQVENYI
REKYSETTEIYTDASRIGQRVGVSFSIPKLKIEVTKRINNNLAVYTAELVAIWLALKWVEDNKPIKAVIASDSSSALISI
KNVVSESRQDIIYEIVQLGNNIIKSGVIISLLWVPAHIGVSGNEMADKLAKQAAQQTMIDMDIKYSKSEIKSIVKTKILG
KWQHIWNNGSTGRQYYTIQNIVGKGRETRKNKKEEDKFSRMRFNHTSLNSTLHMINKHADGMCECNNQETVEHVLMHCPI
YQTERNILFTQLQEKQVEPNIKNILKLSTGDVCFRYVYNYLKDTGLINRI
>G6_DM_gag#LINE/Jockey 127-1614 [Drosophila fruit fly genus]
LAQPTYLTVVRTNTIAHPSVRVISAKNPVLEAAVYLQSSSHVLPGSPAYGAQLPPPPHSLSTLEKMDWQAPPRTHKLGTT
PRKKALRTRKSSSSSEGSTSHTEPDEIKRKPAKKAQGEELEEKPSTSAALRKKLANNAFALLSSEEDEDDQESSDDEPGP
KDDSKPKTPEKPKPTPKTIKPPPIFIPDVTNISALVKMITTLVGPKNNFTYKTVNGNNVRVMMPDKESYTALRLQLVAQN
KRHRTFQPKDERAYKVVIKGLHHSTDREEIIEDLRRQGHAVRDLHNPIGRRTKEPLGIFFANLEPSSNNKDVYQVKRICR
SVVTIEPPQKFNDVPQCFRCQGFGHTQRYCFLEYRCVKCGGPHESRACEKREDDKACCFHCQADHPASFKGCPAYKRAKA
LAAPKTRPVANANKAPPVASPNVTSGRSYRDALNGVHAAPQNPTTPVQTQTETPHSGQIEAMFARMEGMMERMMERMFTQ
MTQLVATILNSKSCN
>Ingi-1_BF_pol#LINE/Jockey 1-3126  [Branchiostoma floridae]
MYGGHKRSVLVAVPVRLVLRILLPHHYNCQSYNHNFASTIMATNDRPVDEAQRHVHPHGSFSGPALCIISFNTEGLTGAK
QDLLAELCVKNNCDILCLQETHRGPTRTRPRINGMTLIVERPHDQYGSAIFVRHGLNVDKFTLTDRNNIEVLSTDLMGVN
LSSVYKPPAETFNLPSVVTDGLLNIVIGDFNSHSTTWGYRQTNEDGDLVENWADTNRMSLIHDPKLPASFNSSRWKRGYN
PDLVFASETIASQCEKEVLQPVPHSQHRPIALRVNAVIVPRTVPFRRRFNLKKANWEKFAEDLDLYIQDLPASTEHYDTF
VKMIKKSSRQNIPRGCRTKYIPGLNEDSKALYEEYVNCFESDPFSAETLECGELLTRTITESRQRRWREFVESTDLTHSS
RKAWKNIRILGNDFTRAQPVPQVTADQVAHQLLVNSHGNPNHHPPRAKLPQVDAASSEGTSPFTRPFSLDELCNAIKDMK
NNKAAGLDDILCEQIKHFGPLALQWLLNMFNHSLSTNRIPKIWRKSRVIALLKPGKDPSIPKNYRPISLLCHTYKLFERL
LLNRIAPFVDELLIPEQAGFRPGKSCTGQLLNLTQYIEDGYEKGLITGTVFVDLSAAYDTVNHRILTKKLFEITKDVRLT
ELIQNLLSNRRFFVDLNGNRSRWRRQKNGLPQGSVLAPLLFNIYTNDQPGHPDTRRFLFADDLSIGAQGRTFKEVENTLT
DALVGLTPYYEANHLRANPDKTQVSVFHLKNREADRQLKVCWQGKWLTSTNKPVYLGTTLDRTLSYKTHILNTRMKVDAR
NNILKKLTNTKWGADASTVRGTALGLCFSTAEYAAPVWCRSAHTAKLDTALNSACRAVSGCLRATRVDDLYLLCGIAPPH
IRRAVAAQREKLKQETDPHHVLHLHTPVPKRLKSRRSFMHSVEALSSSAESQRMAMWSHHLQTAPHRLNLAPKESLPPGA
EEAWPTWSCLNRLRTGTGRCKTLMAKWGLSPDGQTACDCGQEQTMKHLLVCPLLSEPCTKEDLEALTPRGRECVEYWSGT
V
>Jockey-1_CQ_pol#LINE/Jockey 1411-4065  [Culex quinquefasciatus]
MDRRSLKLLNWNACSIRRKNLELVDFLREKEIDVAAITETHLKPGEKVYLQNYKIATQLDRTTSGGGGVLVAVHRDLKPR
RLPHFKLDIIEAVGVEIPTSVGPVLFIAAYCPRQVNARDGSAAKLKSDIQKLTRRSAKYIIAGDLNAKHEVWGNSRRNRN
GVILHNDLQNGYYNVVSPDRPTRVARSGNHSIIDFFITNMAENVAHPEVFEELSSDHYPVVVEVGASVTPQRQPTRKDYH
NVDWQQFQQVVDSNIDYDQHPETSADIDRSLEVIQQAINQAEAANVREVPVNFKVTDIDVDTKHLIRLRNVYRRQYQRTG
DYDKKISVNNLNKIIQDRLDNIRNQEFSKHVSQLGNYSKPFWKLSKVLKNKPKPIPPLIVEDSXLITSEEKANALGLHFV
SSHNLGASMTSRKETSVANSISTINDSTFEFPADSHVSGEEVKVAVKQMKNMKAPGFDNIFNLVLKKQSDQFFQHLANIF
NKCLQLGYFPTNWKLGKVIPILKPQKDPTSPTSYRPISLLSSLSKLFEKVIYSRLLDFTNDNNIILNEQFGFRKGHNTAH
QLTRVTKIIKQNKLESKSTAMALLDVEKAFDNVWHDGLIHKLYLYGFPMYLIKIIQHYLSERSFRVFLNGIASGLFNIDA
GVPQGSILGPLLYNIFTSDLPTLPGNGVLSLFADDTAVIYKGKITRYLVGRLQKGLDVLSEYFGDWKIRINAAKTQTIIF
PLSKSARFVPKDDVLIKMNDVSIPWSKEVVYLGLILDSKLLFRQHVDKILNKCSILIRCLYPLINRKSKLSLKNKLAVYK
QIIYPVIEYAVPVWECCARTHKLKLQRVQNKVLKMVLNVPGWTRSSEVHELAEVKMLDQKIQEKCLKFREKCAISEYPLI
QGLV
>Ingi-1_Rpro_pol#LINE/Jockey 113-3844 [Rhodnius prolixus]
MRPRNARSTNGLSQGPDNTLLKVFFWNAGGLTPDKFSELKAFIAKEDIDIFGIVEAGASTENPQYFQVPGYQTYVLKRAR
QVASGIIFAAKTSLTVDFIVKKEMVENDRLEAVQADVWAGKLHRRFYVLYNPPSNRPDLSWLEAQWGPRDILYGDINAPS
VRWGYMQTSPVGRIFEDFIDANPVVAIRNLECSPTFISYSGNTSSPDVILAHAALDGEIEHSLEHAPGDFGHKILKLVIT
RDSSCPKEPRFTRWNLRKAKWDLFSKLSDQEIKEDLIQGSVDAAFNNICTAVLKCATQAIPRGCVKRYSPFWNEDLQRLK
EERDIARTAYEQSRLQEDKIRLKEAGALLRKEIINAKRNSYNQFLENLDFRKDGVQAHRFLSKISKNMEPAKRQPFVASS
GKTLTSNEDIAKLFCSYYAKISSWQPEQKNRKLNLKLPPTCLNEKENSLFHTPFCWAELEIALDTMPIKKCAGPDNIPPE
FIKHLGGSARSTLLRFMNKVWEQGIPSVWRKADILPIPKKGKPTNRPENCRPIALTSMFSKLYERLLLSRLQEFLEERQL
ISDKQAGFRKHRNTVEQVAYLSQEIKNGFHRKQSTVAVFVDLKAAFDKVWRERLIQKIRDIGVAGNMYKSIFSFLAQRYI
RVKYNGSFSPFKQTRKGVPQGAVLSPTLFSLMINDVVAAVEAIPGVRVLLYADDLVIWATSSHVDAIESYLNKAMETLYQ
WTTNNKLEVNTSKTEYQVFTLSTNKKQVHIKFNNQILPQTDSATYLGIKMDGRLGWKKHIDKLVQQGEGRLGLLKRLAGI
KWGANQDLMTLTYKTYIRPTIEYGNEVLLTASDNSLKALDLLQNKALRLITGAAKSTPIAAMEIQTGIEPLQIRREISAI
NLFERVKRLKIKHWDLQQSSAQRLKTQKPLAVKVSEVIATRGLDLGRKQPFERSCVQYGHLAEGKLNLLQPLLKDKTSEQ
EMRALALETIHSRYPARDWLHIYTDGSARAATHNAGAGVYCREFTLAEPVGRMCTNFDGEVKAISMALAKLIEDQKDNPQ
IVLFIDSQAAILAISSRHYTDHSEVGIARSHIAFLIERGTRVVLQWVPSHCGLTGNEQADELARRRAEMQQPDTPLTFSA
VKNVVKSSYNEEIKRTQQHQAEGKRWRTLLENPVSVTAARKEAVACFRMTTGHDYLQKHLHRIGVVDSPMCPLCLQEEKM
DSQHLPVCHALIDVVANDSTNPHTHENKAIMTKLYWAARSRMD
>Dong_FR_pol#LINE/Dong-R4 94-3540 [Takifugu]
ARLLTHICLHLGMSGTXTDRVIPARTSPGSTRSASGVGEPGPPDVKLATGTRHSWSRAENVVLMECYYGSNPSERGYMQR
MWEKWVLRNPTSSLTKKQLLAQCSNIRNKKLLSQLEIDEARRCASPTVQICYGKGEPGRQVSXGVISSSPPNIEIGYKAP
MTDGLGTRAADLRERIMKSWGNSTTSLPRLTHKVPDQSLLEDMNTALSTIPTTTITETNQLMYAAATVILQMLGYKMKSM
NSQKEQMAPWRRRLEAKIMATRREVSLLTELSRGVNLRTEXPKKYNKLSTTEALETAKQRLTALATRLKRYTREVEARRI
NKVFSTNPAKVYSQWQGNKMTTDPPRAETEQYWKSIWEKEATHNTXAQWLQDLQTEHSQLPEQDPVVITLADIQTRVSKM
KSWTAPGPDKIHAYWLKKLTALHERLAAQMNQLLTSGNHPEWLTQGRTVLIMKDPQKGTIPSNYRPITCLSTTWKLLSGI
IAAKISRHMDQYMSRAQKGIGNNTRGAKHQLLVDRAIAQDCRTRHTNLCTAWIDYKKAYDSMPHTWILECLKLYNINRTL
REFIQNSMKLWNTTLEANSKPIARVSIRCGIYQGDALSPLLFCIGLNPLSQIITKSGYGYQFRSGTTVSHLLYMDDIKLY
AKNERDIDSLIHLTRIYSKDIGMSFGLDKCGRMISRRGKVIATDGVELPEGNITDVQDSYKYLGIPQANGNHEEAARRSA
TAKYLQRLRQVLKSQLNGKNKIQAINTYALPVIRYPAGIIPWPLEEIQATDIKTRKLNGKHKIQAINTYALPVIRYPAGI
IPWPLEEIQATDIKTRKLLTMHGGFHPKSSVLRLYTKRKEGGRGLVSVRTTVQEETTSLREYIKKMAPTDRLLSECLRQQ
KPTKEEEPEGLSWKDKPLHGMYHRQIEEVADIEKTYQWLEKAGLKDSTEALLMAAQEQALSTRAIEARVYHTRQDPRCRL
CGDAPETVQHITAGCKMLAGKAYMERHNQVAGIVYRNICTEYGLEVPGSRWETPPKVLENKQAKILWDFQIQTDKMVVAN
QPDIVVVDKHQKTVVVIDVAIPSDSNIRKKEHEKLEKYQGLKEEMERMWGMKATVVPVVIGTLGAVTPKLSRWLQQIPGT
TSEISVQKSAVLGTAKILRRTLRLPGLW
>Cre-1_MB_pol#LINE/CRE-II 123-4505 [Monosiga brevicollis]
MATESGGEDSWTQVRGAKRPSAESPPSNTTTSPSQTHRSAKHTKHGSARHDRNHVFPDPMTTPLRPHARHSVPTARASSH
VPSTSPAAGATESSARAVVPAAEPVTRTSNGGGEQHPIIGNTSNASPRTPRTPSSPRSFAQVAAAMPAAATATSSAPMTE
DLSASVPSEPNGSGEQQPSPESTGQTHHSIPNTPSDFLTMSSDESDSPPRSTALRAPTPIAPPAHDGDGDTNGSATPEPL
VQSPTPAQMVLPYPSGTQQTHSDPSPPSASPPATTILPAAISHPVEHSEHANSAPLGEVSESETHNTAGEHSESEQDVLL
SDPAPPIAANVLDAQRKVLLKTSGHRQLLACPFGLCKCKGPRLDRKAWVNHVLREHPYDEQATDLVKQVMEAKLVAQCNK
CHLFFEAAGISQHRSRCGANLKRATEALFHAAGHDLLEIMRGAWPQQCVGSRISVCELLKLARHPLMQRSRYPSNATETK
LMAATLSQLYWSAVHSDYTAEEREMCWALILALPSMLLSAPSTALSTIDLRNMFHDRLRWLVTGQLGRVVDAMRKAVARK
QSRRGQLNAGAGAHPNDAVDQSLRSLVRDPDLADEAWANHVTNRLNRGQIAKAFDADKARAVIGNSEVQAVRDLLVPPGL
TPYIASTPASTSTLAPATAVSSPTVSFTKGELPKALAATKGVTDPYGWSGELLASIYRIKEHFSQVLGPRQGSTSDPTAP
SDGDAPQGPTTATGGPQVALNKIFHHIANNTVPESIRHALCSINYTILEKANGKFRPVGTDSIFNKVVNRALLEQQQPHI
AHLLQASPELAVGVKDGISAAVGMAFGELQACESTPGWTMLSLDFKSAFNYTDRARLHEIVADKVPGLLRAFERHYARPT
THCIVDKFFKVIDIDVGQGIVQGNELSPFFFALYSCEVLGLLDATTDYRCKVIKYLDDIVLMGPAEDVAADVEIVKARAE
SAGLHLQPSKSRFYMPRHHSASITAIKSVLPDAVRETANTGMTVLGTPIGRREWMKKQLNDKAKHIAGKLNDMLTTGVSL
QALLTAMQYVPSLINHLYTLPPSLTSGLSELLNRACKDTFVKAFFAKVNLSAPAGAEGHDVTLEQLLEARLFTRANTGGF
GLHDLVERGPVAYVCNMAKLATRYPRVYDRLLEDASRAADFEAHVQRAGFQMATVKDAATQRPAEIIALRSKAALDDLMA
KCALDLQQAYLASREWGVSTVLTMRGRDKLRRLSDTTFAIAVVSMMGFGLHELINVKPTDKCPLCSSKTPQPRLTREHLL
TCRPIKRHNALRDEMGRLLRYATLSHVWVEKSGYNANGQSCRIDLHCRNPFPGGALGPALPDLGIDVTVRTAQPPTTSQA
CIKVGAALRRAEKEKRDYYTGFNHGKTLIVPAAMTTTGGFASSFVDLLGQLARCAEARGVYQPGLDEAFVPRWKGRFAAL
VHQMNADHIQRHFGGVCLRSS
>Plat_R4_pol#LINE/Dong-R4 238-3726 [Ornithorhynchus]
SGTARNRSSTQDQRVVTAPXVLPDGSQATTRTGLPRQRIKRTAEMNKXIMXRYFETTQLETETTAYRPAAYQXFIAKYPE
LTARLTEQNVADRRRAITTRNLLIETEINTIRREVSEQLGINRKADEEAPVDNESEDGDTPLXKKSETKEEPAVIANESH
EDQQLFQIVEHHFNAAVTAFGGTDPIQRRSIPKIRASKKMGIIMGYLNNRVLPQYLNETSDPEYVRYIIYCAAVAAIRSM
GLKTIPQHNNKRVNRVKCEPEWRRRLEQKISKLRKQLGRLTQYKNNNRSRKLINKVARIITPLALNDLSKDKLIEITDTR
TQKLTAYSKRLRRYKESRERKNQNQGFQSNQXKFYRDLQREKIDYSEGVPPIEDVTEFRSSIWEVPKSHNTEATRLREEK
TRTDGIMEMSPIGISEQEVTEAIEAASNWKAPGPDLLQNFWLKKLTTAHGAIARCFVKILREPEEMPDFMTSGNSFLLPK
DNDTSNPAKYRPITXLPTIYKLMTSILAKKIYSHCERNNIXTEEQKGCRKLSQGCKEQVIIDSVIVNQAIKKQRNLSMSY
IDYKKAYDSVPHSYLIEILKVYKIDPSIVNFLQRAMSKWNTTLHLSNGERTVKSRAILIKRGIFQGDSLSPLWFCLGLNP
LSRKLNNTGHGFKIKHEDEHHIVSHLLYVDDLKLYANSKTQLHKLLKITKNFSDDIQMEFGTDKCKSIQMVKGQLTVTDG
FTVSKDQIIEDLVQGEAYKYLGFLQLRGINRIAIKEKLKKTFSLRAEKILKTYLNAGNKTKAINAFAVPVLTYSFGIIKW
SDTXLEAITRNIRALMTKRRTHHPKAAIERITLPYEEGGRGVINIYNLYYSQIAKPRDYFYSKSDCNLYKSVIKTDRSFT
PLKLGNIEYDPAANLQTIQRQIQTWKQKELHGTYPHQLSQNYVDKTVSNLRLKRGLLFAETEGFAVAIRDRAIGAKNYRK
YILKENLLDDKCRRCVAANETIEHVIGGCATLAAVDYTNRHNNVAKIVHQQLAFNRKLANGLTPXYKYEPENVMENSCYK
LYRDGAVITDRQILADRPDILLLDKLNKTAELIDIAVPLSRNIPRTYAEKINKYVGLVEELKQMRRLKXSKVKPIIVSAT
GVVPHTLVKRLKELGIHYTPASIQKAXLLDTCHITRRFLSQQ
>I-1_DAn_pol#LINE/I 1374-5063  [Drosophila ananassae]
MTLKILQWNINGYTNNYNELLILIKLHNPKVISLQETHITLSQQFPIPVNFKMYNTTSIIAKGGVALLIHKDVQHKPIPV
GQIFDAIALEIYSKRKVNILSTYIPPSQKFTTSDLENTIPQSSTPSLITGDFNGWNTLWGSPKSNRRGRILGEYILKNNY
IILNNGQPTHFSTHNSYTHIDLALCSPSLKIHCEFKIMDSPQGSDHFPITINIFNKEKKIFNYTSKFLTKKANWEKFENL
TNCLHSQIPVSTNTNKEHSNINKIILNSAYNSIPQSHPPKTQYNVPWWNKKLNILKTKKNRAWRLFNREMNQENLIQYKK
ANAQFRREIRLSKKESLHALTSTISSQSKAELVWNNIRQFCGIHKSTHIHCIQNSNKNSTVTNSKDIATAFSKHWSSNSE
DQNFSQSFRDAKNNTYRSDTNYLPNKTADFMEQDITDLEFNAALNSLKGNTPGNDKINYIMIKHIGKPVKKRLINFFNSI
LSSFIPQAFKISTVVPIHKAGKDKTTIESYRPISLNPCIAKTLDKIISKRLWWFVTSNKLLNSRQVGFKRGKSVTDCLLY
VDAIISRTLSEKKHASVIALDFEKAFEKVGLHTIKSQLNQWGCGPKLTKYVTQFMTSRKIRVRVNHSQSLIQPLHNGIPQ
GSPLSVILFLIAFNSLSDTICRHKNLNFIAYADDYNIIIDLKKEKNLQIDLNRLFEDINNWCNTSGASLSITKCKHMHIC
RKQCCTCQVSTQTHVIESVKELKILGVSFDSKYSWKPHINNLTKSLTKSSNIIKFLANDKYNCQPTTLVQIVKSLSLSKI
DFGLPLYGLAPKTQIKPIKSILNNALRTALGAFRSTPIYNIYVESNITPLETRIQHLQAKLSKTIIQSTDTPLKPILDKI
LKNKITKYRNSAIQKSIISCSNLGLPVNPIKPTPKSNPPWNLSPESIDIALSKYRKDQTNLSVFIKEFSDIKSKMNNFTF
IYTDGSLYNHIPAYAITTETTVLKMAILPTYSSVFTAEIIAILEAIEISRTIKGKICICSDSLSALNSIKNIDNNSHYPT
LIRESITKLYPKIKILWIPSHVGIIGNEFADNAAKYATTAPLVTTKNLNQTDINKYIKSKLSNNSLNLLQNTSSWYQTIN
INYTNINDYSKNKEITSLSRRDQTKFIRLRLGHTRLTHQYRMLQSTSNTCQFCNQVAMTLNHILNECVAFNPARNPFPNG
NLHSAISNPTTSNILRILNFLKKTKTINLI
>TRE3C_pol#LINE/DRE gi|5410438|gb|AAD43059.1|AF134171_2 pol [Dictyostelium discoideum]
MEQLKLLLWNCRGNQSTNAKNKTEETIKRIGTQLALLTETNFNGFNHHKTMFNFERIDHGSGKGTGIAIENRDTRKGHIS
INFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIID
QDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLC
KEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEE
ISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNE
ETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIP
TKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISN
KRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRRGTKQGDPISPTIF
ALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPH
DLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEI
NNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQL
SRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAI
PKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHR
WSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAIL
KNTNQDLHKYKFNKAWQTPAAPNPLPI
>CR1-37_BF_pol#LINE/CR1-Zenon 1-2727 fragment [Branchiostoma floridae]
GLLLADIVDRYGLHQSQHEGTRLTQTCTSVLDLMILSDPARINHMYTLAPLGTSDHSVVVCKLNLILPSKCVKRHIWLYN
RANFDVFRHELSKANWQSCKIGSVDTRWNSWKQKFLNIAKNTIPNKMANTNSRTHKPWVTPDILEMIRHKTLLYHEYKQS
RTQDSWTDYTTYKNSLTYELRKAEREYYSTISDKFKTPEGSKLLWSVLSNLTGKGSRGIPTLSYRGVLVEKDGEKAELLN
EIFVNITKDCNRPDRTKKLPILTSKQFTSLQVTSEEVLTVLQSLQVNKAPGPDGIPNRLLRETAPEICDSLRCLFNYSLA
TGLFPTEWKQSNVTPVHKKGDRTDPFNYRPISLLPTVAKVLERLVHNHLYTYLEENRLLHKNQSGFRKGDGTVLQLIRRV
DDWAKSIEDPDISCTAAVFLDVKRAFDTVWHQGLTYKLTRYGVGGQLVRWFDSYLTGRQQRVVINGVASTWGTTTAGVPQ
GSILGPLLFLLYLNDMMSLPCKSSLNCFADDTSLYNSAKTVQEVAVTTNADLQLVSHWFSDWGLSLHPDKCKVVCIKSNR
NNVQLPPIYLLGKIVEQVPFYSHLGATIHQSLRWTEHVQEATSKSRKLLGLLRKVSGKLGRQALETAYFALVRPKLEYAS
ALLGDLASSASRMLEQVQYQAGLLVTGAMKGTPKSNLLQELEWDSLATRRQLNSLTIMYKMTNGLVPPHLQLLTPSTRGA
QSTTRLQLRNNTHLHVPRCRTQTFKNSFIPFTSSLWNQLPQTVRDARSLADFKRVSKKHLFTTRHHQTYRRLGPRQSNIQ
AARLRMGWCQLNSTLHKMNIKSKQCVCGASSETVQHYLLHCPLYSEQRSKLTTTVECLVRQRPTVSLLLHGSPDHDPVIN
RQLSEALCVHDIYQKILFQPCHCLVNFS
>WORF_DMi_pol#LINE/CR1 1192-4089 [Drosophila miranda]
VPSQRFELESKNYRTCSKKLMYYFSMHYQNVRSLLGKLRQIHTNSASFDFDAIAFTETWLNSSVNDHEIFIDSYTIYRMD
RPSFAGGVLIAVKSVFSSELFPFNNIHGIEFVAVKVRVGSAFFYLTCSYIPPRSDAELYLHHLSAINNVVSTLGCNDRII
VMGDFNLPFLSWLPCNDANLLFPNCHNDFINGLTDISLVQINAVKNIRDRLLDLVFVNDGSLTTVSRASPISLPEDPYHP
TLLISLECTQSGGADSSMAPCHIKCFRKTNFIDLDLHLSRVDWSFLYSLPNIDATVNSFYSSIYSALNTFVPDITVPVSS
KPPWFSKYLSYLKNNKSRLYKKYQKSGSTLALALYSSARSLFLAVNSQCYNHYLSQCSSNFRSDPKKFYSFVNSKRKSNV
FPPSLHYQNKTEASAVGIANLFANFFQTTYSSHIYNASTPYPYQLPQANSIFLPFFEESVVLEGLSSMDISFSAGPDKVP
SCILKHCAQSLCKPLTFLFNLSLEQSCLPVIWNESYIIPLHKKGSRSNIENYRGIAKLSAIPKLLEFLVTRQLQHLCCSL
ISPSQHGFFRHRSTSTNLLEFSNLIHRGFQIGLQTDVVFTDFSKAFDSVNHALLIQKLSLLGFPTNLLDWILSYLSNRTQ
RVLFSNVLSNTVNVTSGVPQGSHLGPLLFILFVNDLPQVITYSTTLMYADDVKICLSYSDWYLHTRLQLDLSELLLWCST
NLLFLNLSKCKLMTFYRRAPHFVSYVLGNHVLERISSSNDLGVLFDHKMCFNTHIAATVNKAKGVLAFIKRWSKEFDDPY
VTKQLYISLVRPILEYCSCVWSPQYKEQQAVIESVQKQFLIFALRNFNWDSGRILPPYRSRLNLIDLPSLHHRRICNGVM
FVHKLLLGTVDSQTLLGQIDLAVPSRPTRTFRPIRLPICRSNYADHEPFRVLCHNYNSLCLTLSPELSLKLIACNIYNHL
NLANF
>PlatCR1_pol#LINE/CR1 633-3386 [Ornithorhynchus]
MGELECLAASEDLDIIGISETWWREENQWDTVLPGYKLYRKDRDGRAGGGVALYVRDNVNSNNIKILXDKRSTMESLWIE
IPNLNKNIVVGXFYRPPDQDEESXQEMLDEIGEAVKLGQVVIVGDFNYPHIDWLNNSSGXEVEVRFLDRINDCFLEQLVL
EPTRKDNILDLILSSGQDLVQEVYVGEPLCNSDHNSXKFNILAGEGRPKKTNTRIXNFRKGNYEKMRTLVRKKLKGVAKK
TSDLLEAWRLXKNTXLEAQVKCVPQNKKNRRPNRNPAWLTGRVKEVIGGKKSSFXKWKAHPSEENRKVHKEWQVRCKQEI
RRAKKEFEEHLARDAKANNKRFFKYIKSRKPARESVGPLDDRGVKGALRDEKEIAERLNEFFSSVFTEEDVREIPTPKLF
FVADRSEELDQIVVTTQDVLDQIDKLDVNKSPGPDGIHPRVLKELGGEVAELLARVCNLSLQTATVPEDWRIANVTPIYK
KGSRGDPGNYRPVSLTSIPGKLVESIIKFRISEHLEKHNLLGERQHGFCKGKSCLTNLLEFFEGVNKHVDRGEPVDIIYL
DFQKAFDKVPHQRLLKKLSNHGIGGNVLSWIENWLKDRKQRVGINGHFSGWRSVNSGVPQGSVLGPVLFNIFINDLEEGV
RSEISKFADDTKLFRVVKCRADGDKLQEDLIKLSEWAEKWQMSFSVSKCKVMHLGKNNPNYNYAMMGSELSVTTQERDLG
VIVDCSFKSSVQCAAAAKKANRMLGIIRKGIENETKGIVLPLYKTTVRPHLEYRVQFWSPHLRKDIIELEKVQRRATKMI
GGMEKLPYEDRLKRLGLFSLERRRLRGDMIEVYKIMKGVDRANTELLFTKSHNTRTRGHPLKLEGGRFKTNKRKHFFTQR
VVSIWNSLPQEVVQAENISRFKRGLDKFMDERSIMGY
>CR1-1_LG_pol#LINE/CR1-Zenon 1944-5219 [Lottia gigantea]
FSLLNHVSSKVTLCLLFTLLNDTFSSILYYCFILIIRSGDIELNPGPTSTKLYDKISFFHLNSRSIRNKLDKIFDESHDN
HVCAFTESHLDGSISDQSLIRDGFSIPYRKDRNCHGGGVLLYIKDYIFSKRRQDLESPLVESIWVEIHVLHKILLVGAIY
RPPNSPAQVWQSIDASIELAFSSSKNIILLGDFNSDLLTPNSRLSNIILSNNLKNVCEKPTRVTSRSSTLIDVIIVHDEI
DICFTDTVDFPNYISDHKGVHATLDLSIPSYHSFQRVIMIYSRADYVRLNDLIRNFDWGNCFENFDINYSCSKFYITLNK
FIDICIPKKSVVIRPSDKPWFNSDIRKAIRLRDRLRKISIKSKNINDFNKYKTQRNRVNNFIKSLKSKFYVKLTDVINDP
NSSNHEYKWNCMKFFLGTSCTPPLPPLVSNGAMVYSDADKAQLFNTYFASISNVTPTDNLPDFNERTSSKISLPIISEEE
IIDLIKCLKNKKANGFDKISNIILKNIASSISYPLHLLFNKSLESGTFPSLWKEARVMPLYKKGESWDVSNYRPISLLSC
ISKLFERVIFKHLYNYFHENKLLYPYQSGFRPGHSTVHQLIEIYNDILVAIEKKQFACFAFFDISKAFDRVYHPGLILKL
SKYGIGGKFLDWLSSYLTNRFQRVFLNDALSPAELLNSGVPQGSVLGPLLFLIYINDIQDVLQNLSRLFADDTAVGCTKS
LISEIEISMNNDLSKLYQWSSDWLVSFNPSKTKVVLFSTKPISQLPNLILGQEPLEFVPFHKHLGITLSNDLKWSIHIDT
ICKSAYKLIGVLRKLKFTLNRKTLLSIYTTYVRPRLEYACEVWDCCNISDLDRLEHVQLEAARVITGLTKYCKIESLYFE
TGLHTLSERRKTRRLSLLYNIVHNNAPNYLIDILTPIDATPRFYNLRNSNEIPIPFARTTAYQRSFFPSTTHDWNLLDAQ
LKDSPSIKAFKINLKRSFLSNSAPVYFDAGDRRENILLTRIRHNCSGLNADLFKINVITNSSCKCGYHTENSFHYFFDCQ
IYRAQRLVLLSNLSDYVVNLELILCGNRNFSVDTNIIIFKHVHDFIKHSKRF
>CR1-36_BF_pol#LINE/CR1-Zenon 217-3171  [Branchiostoma floridae]
MAMTLARIDKDYGIVIQFMLPFFVLFLICGDIHPNPGPQQNELIVRFTNIRGLRTNLTYLEHNLVASHPHIFCVSETFLS
SKVYDELLVIPGYSVFRRDRPNDSGWGGLVVYCSEALTVARMPDFENHYYEYICLQVSLPGRKIFMFCVYRPPSDDDSLF
DVLSENIDNIQELHPKSEIIVLGDLNSHHEDWLGSDKTDMHGECAYEFAILNNLQQLVDEPTRLGTDGKCSKLDLFLTTS
PDNHAVTVSAPLGSSDHCVVTSVANYKLPTQSKPGRRKTWYYDKADWDGMRSYLADTNWSTLLKGKSADAAWTCVRDVIS
DTMDMFIPSKMTKHCFSDKPWFNEDCKLAVKQKQNAFKRWQNNRTMDFWTLYIKSKAECQRVVRRARAQFSLHLQQNLKH
ADNKQWWKLVKSVTDSNKTSSVPPLVSIGKTYSKAKDKAELLNKTFAANAHLNDAGKSPPVLPPKTDETISSLKFWPKTV
LRKLRNLDTTKANGPDGISAKVLKKCGPELAPVLSKLFEISLDSQTVPSDWKAAQVIAVPKKGNKKDPSNYRPISLLPII
SKVMESIICDHIRKHLDRHQLLCDSQYGFREKRSTIDMLSYITQWWNNALDTQKEIRVIALDIKKAFDRVWHRGLLSKLI
SFGIHGDLYGWISSFLADRCQSVVLDGFTSSSIPISAGVPQGSVLGPLLFLIFIDDLEQHLVNDLHLFADDSTLHVVIKS
PGLRNTCALSLQQDLDSIEKWASDWCITFNAGKTEEMIISRKRDQTHPPLFFMNEELKPTQSITLLGVTITNTLTWTPFI
KSLATKTARRLFILGRTRDLLPLQARITVYKAYIRPLMEYASPIWSGAGTTALKMLDRLQSKALRQLQIRVDPQNAGIFP
LDHRRKVASLCTFYRHIFLQPSQELSGIMPTRATGTRVTRSSTRAHPYLVKVPRSNTQLHLSSYVPRTSRLWNSLPASVF
PARPDMNIFKTAVNKFLLNYNSQS
>CR1-26_BF_pol#LINE/CR1-Zenon 1089-4469  [Branchiostoma floridae]
MYRAVIGLFSAHSRLISKERFRLTLNLDIFLSYTTVFISFVVILVAGDVHPNPGPVCRKQFNVMHLNVNSLVAGTKMDEL
SALAVRLNLDVIAVSETWLGDSVDSFAISLDGFQLPVRRDRNRHGGGVLIYISDQIAYKRRLDLESPSVECIWLELFVGR
SRLLFSVYYRPPGQDSKTVDEFVDLFSDSVFTAESSQHDGIIVTGDFNAKHEAWWAHDPITSVGTKLLQASKMLNLTQVI
KEPTCDLSRSPSLIDLLFINEKKLIKSTSVLSPLSGCHHSPIVATINLSLRPPRPYVRTIWDYSKTDHSLLALFSSEPIW
HEVFYCDTVEEASKKLMELILEAKIKCVPHKDILVRPRDKPWISPDIRRLMHQRDKLHKKAKLTNSPIHWSSYRLIRNKL
VHQLSLAKSNYHNRLVASLSSPPSSNKKWWHIVKHFYQSKVNSTIPPLKSGNCFITDSREKATMFNLYFSSQASVDDSSA
RLPPLDFLTSARLTQCVTSAAEIELYVSDLEVSKACGYDNVDNRFLKSICPYISDKIAYVFNLSLNHGVFPESWKRANVV
PIFKKGDPEDVSNYRPVSLLPCLSKILEKIVFKHLYNHLMSQNLLYSLQSGFIRGDSTVGQLVCVTDKILEALDSNREVR
AVYLDFSRAFDKVWHKGIIFKLQRNGVEGPVLNWFHSYLSDRVQRVVIDGQHSDWCNIRAGVPQGSVLGPLLFLVYINDM
VDDLSSCPFLFADDSSLVDIVDSPTETASSLNSDLSKISSWASTWLMKLNPLKTEEMCFSRKIDPPCHPPLFLDNCVIQS
VKDHKHIGVFLTSTMSWEKHITHMIAKVSKRVSTLNKLKFKLPRHVLEVIYKSFIRPLLEYADIVWHGCTISDSRRIERV
QYECSLTVSGAVRGSSYLSLLSELGWEKLSDRRHIHSLTMFHKIVHGHTRQYLQELITPEVSASTPYDLRNKHNLQSPAC
TTTRYQRSFIPYATYHWNGLDIAVRSFNPSTFKNYLIKLVRPSPNTHFSQGPRYACVLLTRLRIGTCSLNFSLFTRNLVD
SPSCSCGSRCESVVHYLLYCPNYNQLRKTLLCNLQDLLTLDLKTTSDPVLTQLLLRGSPTLPTETNNHIMQLTQTYILQT
NRFQTD
>I-1_DPe_pol#LINE/I 298-4002  [Drosophila persimilis]
MTLTIIQWNLRGYINNYNELQIIIKQYQPHIIALQETHLFNIHNIPIPINFSLYAKNYSPNFGGAAVLIHNSIESKEIHL
QTDFDATAIEVESKKKFKIISAYISPSQNFNESNLHNVLSNNSSSLILGDFNSWSKLWGSPKNNARGNTVAKFLNNTNFI
LLNDKSPTHFTTHNTYTHIDLSFCSPDLFQYANWKIIDDLHGSDHFPILITLFNNNKQNKTQNNPIFKINSANWDAFKDK
TDYFNTKSSPSNNINKESSCLNKILLQSAHLTIPQTSIKNHPRNVPWWNNGLQTLNNERKQAWNKLKKHITTTNIIRFRK
AAAKFKKEIKSAKNKSLSSFTSEIQPQTKTSQTWSNIRRFCGLNNMKNIHTIIHPTTLQPTSDNPSIANSFAEYWSDQSK
DSNFSSMFTNNKYSISTYQSSPPSQSAQKIESDITSIEFSSALSSLKGHTPGIDRISYPMIANTSPAVKDRILKHYNNIL
NNYIPQAYKIGLVIPIAKPGYIKTSITSYRPISLNSCFAKVLDKIIAKRLWWFVTTNKHIHTNQVGFKRGKSVTDNLAYL
DHLITDALSHKQHLSIVSLDFNKAFDKIGLHAITKQLQEWNIGPKILNYIINFMSKRKIKCRVANNLSSTFPLHNGIPQG
SPISVIIFLIAYNKLANLITIQRNLTFTAYADDFHIIVKFKKNQTQENLNLDDLFQKIDEWCSFSGSSLSFDKCKHLHIC
RKHNCKCTITTRNLNIPSVDHLKILGLTFDSKYRWTRHIEDLASSLSNKINIIKCLSSNKFNCNTHTLISITKAIIVSKI
DYGLVFYGNSSITWLKKIQTILNCAVRIALGAFRTTPITNLLMEANINTVADRRDFLQAKLIKNLYFPNNSPLHKISKSL
QSRIHFNNKIPSAITYSLQHCKKQNISLLVKPEIKTKLPFWKFQPNTINTELEKLDKNNTHDSIYQQHFLTIKNQFNDHT
FLFTDGSKTISATSFAITTEKNTLKVGLLQNFSSIYSAEIIAIFEAIQIVKSMRGKYMICSDSLSSLQAIGNPDNFNYYE
SKIRSLLMQLHPKIKLLWIPGHKNIKGNELADQKAKSASIMPLTYTHNNNISDINKHLKTKMLKDKLIKLEQTSNWYQFI
NPNQITADKFTKRLDQNTTSRIKQTKIIRLRLGHTRITHQHYLDPTKINTCTHCLNNVPVTIEHLLKDCPSSQLTDIRFK
IFANNNPLTFLSNPTKTEIDLIIKYLKETNLYPLI
>I_Ele7_gag#LINE/I 230-1594  [Aedes aegypti]
MAASSGWDPGLPPTAVDGRPTVPEWMGGVGIGQLQILSLFAADGETKLCPFIVGKSMHDLAGDIESTTTEASGMKYVLRV
RDAGQARKLLNMKALFDGTAVKVEPHPILNKRRCVISCREIMNKTEEELQNWMAKDGVIGVKRITRMENGKPVNTPTIIL
TINGTAVPDYIKVGPLRIKTRLYVPDPMICYRCFEYGHTKTRCKNAAKCRNCSQAHNMEEECKEAPFCFHCQGNHGPSNR
SCPVYATEKEIVRLRFTKGISQQEAIKQVKAGGGSYASVSQVQNRLTIAQGKSESELLKTKDATIKQLTETIATLTKRIE
ELERRSKSKKEKKRSKRIQLTKDDESCSEMETDSSAKQTTTEQPKGGTSTQVSAAFIKPSVQKHKRHPTTEIYAPITKKP
LADQIQLPNTQSNTNLNKSPANPPGILDLQNLMDSTRLDSPRSRPNNGQHNKPSK
>I_Ele4_pol#LINE/I 2818-7797 [Aedes aegypti]
LATDRRSAGELEATSEPESPIRLRHHAQNNSPAVSLDSRGANVPDVLPLPESLGRLRRLEDDMDEELPLHLLRCPAKTPG
SQSPVGAVVSHSGTDGQPLALGEDLEEGNQVAKPTSLDDVGSQVFQVIGTRRALPATPKDNVGSQVFFHQANTVAYTSNP
TIYDAVSSTSVSVDSFVKNPGHPGHSNPGGKSHPVMSTIHSERPFPDPTVDQLPPLEPPGPSFSDVRSQSSYASSGHLGN
SNPSGSSTKLLKNSNPDVIETIAQHTIPSAPTTWPPRSLLMDDQPRSFSAMYSENLNPGAIAVAPPPPVLLPPSSGTPGP
FSLDNRPLFSEQINSDGTTAALTLAVRPISPLLGDHHRCLDTSGARRLGSKDYSGFPSYSFDEVPLANANPPASSRSPEY
PSGGDSLNRSAAITPPNFPRHHSENSKDTSSSSTHSKNSPSENCDFRSRFPTPTLPDPTKFCLQWNINGFYHNLSNLELL
THVSSPWVIALQEVNRTSTTAMNRSLSGKYRWTMKKSRNVRHTVALGVLLSVPFEIIEIDSDLPIVAVRLVGSFRLTIIN
CYLPCGSLSGIKEKILNIIRTTPEPRLLLGDFNAHHQIWGGDRTDPRGTAILNALEDSDMVSLNDGSPTFYNGRVASSID
LSMASRSIAYKFLWQACADLHGSDHYPIQISAAVTSPPITRRPRWCYDRADWQIYQSNINHLLELEEPASLTSFSNVITK
AAASAIPKSSSRPGRKALRWWSDDTRSIVKARRKALRALKRLPNDHPEKEDKLRIYRAVNIKCRSTIRTAKRLSWEEFLD
SMNPSQTSADLWGKINALSGKRKITPISLDIQGSTITEPSAVAEALGNYFGSLVSIDAYDPVFRQRIANNQSSLSNFVIP
EDHGTSQLNCSFSMRELNFALGSSTGKSAGPDGIGYPLIKNLPLGGKAKLLELINSMWHQRSFPDEWRESLVIPIPKTNV
ASRDTSKYRPISLTCCLSKVVERTVNRRLKEQLEADGRLGHRQHAFRPGYGTDSYFASLGDLLHDARTKGQHADLVSLDI
SKAFNRTWTPLVLKQLTEWGFSGNLIGFLKNFLLHRSFRVAVGNHSSSAFAEETGVPQGSVIAVTLFLVAMNGVFENLPP
DIYIFVYADDILLVAIGHTPRRTRVKAQAAVTAVHKWASSVGFSLSAAKSVRGHVCNSRHKLVSPGIKIDGQPIPNRKTV
RTLGILIDRNLLFKEHFNAVKTNCRSRLNIIKTISKPHRSNNRSTRFRVAQAIVDSRLLYGLEITCLSQQNLLEILSPIF
NGYVRTISGLLPSTPADAACAEAGILPFRHRVHAAICRKAATYASKTAGNDRVALFDQADRILREVANSSLPPVARVHWH
GASSWQLPPPIVDEQIKKTFRSGDDSTVLRASVLELLRTKYPEHIHRYTDGSLSQRGVGIGISGADLTLCQSLPTECSVF
SAEAAAIFYAAISPASAPILIITDSASVLSALQSERPSHPWIQGIRAHTPETVTFTWVPGHCGIQGNVAADLLAGTGHQM
SRFTLSVPPPDVKRWIAKSIRDYWAHEWHQNTSAQLRKVKGDTSSWEELSSLRDQKIISRLRTGHTRFAYNFDGRSFRQE
CEQCGVHNSAEHVICHCPLYGHHRSTNNIPGSIRDALANDPASLSALICFLKETRLYYRT
>I_Ele18_gag#LINE/I 404-2092  [Aedes aegypti]
MSDQDQFPPFDDPGGGPSDDSARNIIHGSYAGRTVPTWLDPSDEHGKLTVLKLEGENGPLPSKPFLLRTSVEKWIGGKIE
GAFRENRGISYALKVRNPKQVEKLMAMKTLADGTKVKISKHPVLNKSRCVVSCLDVKDASDDELMDCLAPQGVSEFRRIK
RRTGKEQYENTASIILTIEGTVVPNHIDFGWLRCKTRPYYPAPMVCYQCWSFGHTKKRCQQSQPTCGNCSQGHVTDETNR
CNTDPFCKRCNSASHSLSSRKCPTYVEENAIQRIRVDMGVTYHAAKQIFEQSNSSRSFAAVTSASKDHTIADLSSKVDRL
LQETAAKDKRIAALESASIGNTTENVGKAKLDQLIQKVNQLTKEIETKDQRILALEKAQHIGSRLDLVRQHGTIEDLIEE
VAALKGDLAKKERENLLLRELYGKKVNQNKRSTQNLNSLSPKSSDSLFTQKSVQSLPSPDYEPIQSSNVSNDEVRKWLQT
TAANNPVTDDRKYKNKSKKPTASNENEPICTPSVAPVDKTSKRIHSSTDSDDSIGRSKTKINVKCPDAIFVTSSDGDDET
MQS
>I_Ele24_pol#LINE/I 2655-7109  [Aedes aegypti]
MTDPCTTPEHNSNTANNDKPFSNFAPDSRGTFGPEVKPQPEPQDRPRRSSCETNENLIRNSASGSRSTGRPEVMPPPERP
ERLRCPMDEDAINAKKNPTISPGSWRPDSADVLPTPELANHLQRRREVEGGTDKGQPTYSPQDDEGSEALVIVGTHKGSN
PRTPKDSVGSKSYAAHSNPRNSTPGHPEHLNSGGKSHHAIPHPIVSNPPAESSPSSSIDGSLSFAAPATNPLPIHLPANQ
VASFQRQSRHRYGSRPYRQTSYNRSRGSSISETYHPTPALPKPVNILLQWNINGFFNNLANLELLTSSTTPWCLALQEVN
RVTTEQLSRSLRGQYRWALFRGTNLRHSVAVGVLASIPFEVLRLETDLPAVGVRLHGPFNISVVNIYIPCGAQPNLQEQL
HRLLEATPDPVLLVGDMNAHHPIWGGQRTDNRGTSLLHVFEEHDLIVLNNGSNTFLKGNSASAIDLAAASRSCTNRFHWN
VDSDLHGSDHYPIHIATNVAPPATTRRPRWLYEKADWDNYEQTFRNSSRGRESAHLQELTDIINKAAKSSIPRSSNQPGR
KALHWWTDHTRIAVKARRKALRAVKRIPIGDPSRENALNLYRSRHSECKKIIADAKRNSWENFLDSINASQTSSALWTRV
NALSGKRKTKPLTLRIENSHISDPSTVARILGEYFASLASVDSYTDSFKRRMQPTISSVPTFPVPDDPENLLINQPFSIS
ELLFALKCCTGKSAGPDGIGYPLIKNLPPSGKLQLLELMNKYWLTDTFPPEWRESLVVPIPKSNAETHDPSKYRPIALTC
CMCKVMERMVNRRLKQFLESQDLLDHRQHAFRAGHGTSTYFAQLGDVLHTAQSEGLHTEIVSLDLSKAFNRTWTPLVLRQ
LVEWKLSGHILRFVQNFLSERSFRVIVGDYLSDSFPEETGVPQGSVIAVTLFLIAMNSVFLTLPKGIYVFVYADDILIVV
SGKTPVRVRIKAQAAVNAIFKWTTATGFELSAPKSVRCHVCPTNHRISVPISINGQRIPTKKTVKVLGVTIDRALTFQHH
FDLVKQSCRTRLNLIRTISRPHRSNNRNIRFRVAHAIVDSRLTYGLELTCIARERLITTLAPLYHGYIRIISGLLPSTPA
DSACTEAGLLPFRFFISAVICKKTAAIIEKTIGDDRICLLTEGNSILRTAANVDFPPVARIHWNGDICWLSPKPNVDSTI
GNQFRAGDNSIALRTTVLDWLRTKYPNHDHRYTDGSLSMRGVGLGVFGANISVSLSLPPLCSIFSAEAAAVYLAATTPSD
RPIIVLTDSASVVSALQSNRPSHPWIQRTITDARPNTTFAWIPGHCGIAGNTAADRLAGAGFSCPRYEDNVPFDDVKRWL
TKQFRSTWSMEWNQQNSPYLRKVKSSTERWKDLPLLKEQQLVSRLRTGHTRFSHNMSGNGSFRRMCSYCHIRNTVEHVIC
VCPLYEFSRNIHGISRSIREALGDDVAALEALLRFLKDSGLYNMI
>I_Ele22_pol#LINE/I 2256-7171 via tfasty with I_Ele15_pol, 1 frameshift. [Aedes aegypti]
PQSLPSNTPKHKSSQEASSSRGPVSAEATPQPELADNPRRSSDLSVSGTHKGSTTRSPPCPDYGRDRQGPARAEAMVVPG
LAEPPCHPDHAGRGTHKGTKTCSPLDDEGCKQTGLSPYAPVFVPRARLKSHTFSSKGGSQSIPPKHDQESQKTNRKSRTK
TCNKPVHRRSTGHSASTTTDLFPPLGPEVCNSDLYDNLHKTRYGESAIIVPGHSCFLVPKCGPGPRPARRRPGPARAPGG
RPRRGGARGRAAPGAGPAPRGGGGAAGPRPGRAAPAGPAGRRRPGAPPRRRRGPAGPRAGAGPGAPARPPRGPPRRRGPP
GAPAPPAPRRPRPAPRARRRRRNLSGHPGPQNPGGKPHPAKRTTTTNSSNLLLPAVGISLPLAGGSPPPSTGRALSCSAH
NTNTTRINGSISQESTVSATSNSTSYGGRAIFATQWNINGFFRNLPDLEMLVRDRQPAIIALQEIHRTTPTMMNNTLGKK
YLWYTKIAANLYHSVAIGVSTDLSAELIDVNSDLPITAIRLSWPIPISVVSLYLPNGKIPDLESRLISAFNQIPEPKMIL
GDLNSYHRAWGSRSNNARGSIIVSIASQCDLTILNDGSGTFFRGQVESAIDVSLVSAAITNRFLWSAESEYRGSDHVPIL
LTLENSFAPETTRRPRWKYEKADWSEFQMTLDNELDISPSASLSDFSALINKVASATIPKTSSKPGRRALHWWNENTQKA
VKARRKALRAAKRARKQFPDDNPERAIILANYRDARNTCRQTIREAKEKSWSEFLDTINEDQSSSELWRRVNSFQGKRRI
KGMALKIDGTTTRNPHVIADALADYFHSISSHQRYPEKFIKRHSIANEAVHRFLVPPDQGQAFNIPFTMKEMEYALQKAK
GKSAGPDDIGYPMLKRLSPRGKITFLQMINNEWTAHTLPESWKHSFVIPIPKSSGPINDVGSYRPIALTSCVAKIMERMV
NRRLIEFLEENRKLDHRQHAFRSSYGTGTYLASLGQILDDAARNGDHVEIASLDLAKAYNRAWAPGILSKLVSWGISGNL
LAFVKNFLDGRTFQVLLGNHKSKTVTEETGVPQGSVIAVTLFLVAMSGVFLVLPKGVFILVYADDILLIVTGKHPKSIRR
KLQAAVSAVAKWSQEVGFDISAEKCARLHVCESKHIPPRKPLTVNGVPMPTRKYTKILGVTIDRHLKFHCHFNKIKEACK
NRVSMIRSISGKRTRSDRQTRLRVADAVVCSRLFYGVELTCRSFEYMVQQLSSTYNNTIRALSGLLPSTPASAICVEAGV
LPFRYRAAMSICCRAVSYLERTEDDGQVCFLAGQANHALTAVAGSVLPPVAGLHRVGPRSWRAREPLIDNAIKFHFRKGS
NPTQVLANFRHRIQNKYRYADIRYTDGSKLAGRVGFGIYGTNLEQSHRLPNQCSVFSAEAAAILTAILEPSENHILIVTD
SASSLQALKSSNNKHPFIQAIQAELDNERTSTTFMWVPGHCGIPGNERADAAASIGRQSRIFCNEIPGDDIRKWIKNTLW
DAWASEWHQERSLFIRRIKNEVVPWNDLPNWKEQKVLSRLRTGHTRASHNMGDSRNFRKICETCNTQNTVQHFISDCPTL
EYLRMQHDITSISRALQNDAVCERTLLNFLKEARLFNEI
>I_Ele4_gag#LINE/I 1010-2698  [Aedes aegypti]
MAASSAGPPTNSWWDGPANDNFGDRVDGSFPGPTLPPFMDPEGLHGELHLLRISGVNGPLPNKPFHIRRSVERFVGGKID
GAFPEANKSSYALKVRSQRQFNKLLDMNQLLDGTPVLVAEHPTLNSTRFVVSCRDVVDMSEQELLEELKEQGVKEVRRIT
KRKGQARENTPALVLTCRGTIRPETINFGYIRCRTRPYYPSPMQCFNCWLFGHTKLRCQAKVATCGTCSGDHPIAENRDC
DIGDFCKTCNSNEHRISSRSCPRWQYENTIQKVKVDQGISYPAARRXVEQNRGSXTFATMASYATKXPXQPRERNEELSA
VLAAKDAEIAELRAALATRXAPSXTVSSEIETLKXIVXDQARQIQLLTEQVSVFLKAVMPAASXTSPTNXAPTTKALTXS
SATXXEETGXSEPSATTNXASXTTLNNSPTTSKNGVHEPIVDPEAXKDTISAPLSXSVTXNEQHXDKXLDXDPSDSDTAS
SDRSANIEFFSPHQSKNTLSPXTPKPPRTRALLPRGSGSNVDPTKTPGKRPISSISRTETLFQQQKKSKIKSAEGHAAVS
NKR
>I-2_DYa_pol#LINE/I 1570-5274  [Drosophila yakuba]
MKMSLKVIQWNINGFNNNYSELQTLIAKHKPHILTLQETHILAHNLHPIPINYAMITLNSSPSYGGVAILIHKSIEYREI
TLRSDFDAICVEICSKTKLQIISTYIQPKANFTLNNLYSVLNIANNIPTLITGDFNCWHKRWGSPVNNRKGITLEKWIAQ
SNLIILNDGSPTHLSTHNTLTHIDLSICTPELAIETNWTIETDFFGSDHLPILNNIFNRAQIQKPTHRPFFKTNSANWDL
YTLLCISHNSSLPISSNINQEAANLSKIILRSAHKSIPKSTPKTSHTVPWWNKELEKLRKSKNKAWQLLKRNITTENIID
YKRKNALFRRTHKEAKKESTSKFTEEINPLTPIPKIWNNIRRLCGLNTLKGLHCIKSINSTDNITQPQDIAELFCQNWSL
QSNNSNFTNSFTTNKSRILADDLSYAPGKAALPIENEINFIEFSSALNSLKGNTPGLDRINYSMIKALPREIKNRVINLY
NAILGDVIPQQYKLSLIIPILKPNNEKTMISSYRPISLNSCLAKLLDKIVAKRLWWFITSNKLLHNSQVGFRKGKSVMDC
LLFIDHIITKSLATKNHISIVSLDFSKAFEKIGIHAVIDQLIKWGVGPHILIYVKNFMTNRKIIVKVGKSYSKSLPLDNG
IPQGSPLSVVLFVIAYQKLTETIALYKEIYISAYADDFNLLIKLDKTKNTTINLDSLFCNISDWCNYSGGSLSPAKCKHM
HICNKQNCICNVSTSQVHIPNVSSLKLLGVTFNRKHKWNPHIDDLTTCLSKRLDIIKCLASTKFGCSTLTLVSIVKSIII
SKLDYALPLYGSAAPSSLKKIKSILNTAVRIALGAFRTTPSSNILFEANITPLDIRTEFLTTNLFQLVLSSSDSPLHNII
KNYKQPKPEEKHSVLDKVLKLNKSFNIVLRPPKKLKHKDPPWALNSSTINTTLSKLNKNTTPPEVYRKQFLQLKSEQSNK
TSFVYTDGSQMNESTGYAITSETEVFKMXLLPTYSTVFSSELIAIHEAILLLKTRRGKFMICSDSLSSLNAIKNVNNNTY
YVVEIRNLLIRFFPKFTLLWVPSHINITGNELADKSAKDSRLFPLTYTXNNNNTDLKNHIKKFYFTNQLNRFTDTSTWYK
SINLHKMNIKNYLNYKDKLMIPRKDXIKLIRIRLGHTNLTHAHYMNKNASALCPFCNTNNSITLEHLLTFCXTFNQIRLK
YFSQSSLKSLVTNPTSDNIRTIIKYLKECNIYHII
>I-2_DR_pol#LINE/I 1688-5349 via tfasty with I-1_DR_pol, 1 frameshift. [Danio rerio]
IIQWNCRGIRANFSELQRLACIYNPLAFCLQETHLTPESNISLKHFTCLNAYGPNLQRPCGGTSILLRHDVIHSNVDINT
NLQVVAVRITLQNTITLCSVYIPPEATVSHQDLENLVEQIPPPFILMGDFNAHNPLWGGKQLDAKGKKMEKLINENDLCL
LNDGSYTYLHPGHGSFSAIDLTICDATLATDFSWYVCDDLCGSDHFPLIITKTAADTQQRPQKWKLEKANWYSFQALCYE
RLDGKQQDKENPIKWFTEKIIEIADESVPKTSTKQSKRRNPWFDDQCKELIKARKKAVRCFQKHPTSENLIRIKICRAQA
RRYIREAKRQSWNKFVSSLTINTPSKKIWDAIRKMKGREGPQLKHIDNHGTLLTSKHDIANILAETFAKNSSTENYQPNF
QKIRTNQETIKLNFISQNTEIYNQPFSMEELLNSLKCCHDTAVGPDKVHYQFLKHLPQLSLCLLLDNFNEIWKSGNIPPS
WQEATIIPIPKPGKEHKDPNNYRPIALTSCVCKTMERMVNNRLVWKLESDHQISDFQCGFRRGRCTLDHLINLESYIRNG
FIKKEHVVAVFFDLEKAYDTTWKYGILKDLYKMGFRGNLPIFISNFLSNRTFRVQVGTTMSDPQIQQQGVPQGSILSVTL
FMVKINSVTDVIGRNMMCSLYVDDICICYRGKNMNIIERQLQLCINKVSNWSTENGFKFSKTKTVCMHFCLLRSLHHDPE
LFLDEEPIKIVKETKFLGLHFDCKMTFIPHIKALKNKCLKNLDLIKVLAKTKWGADSTVLMRLYRLLVRSRLDYGSIIYS
SARKSYLQMLDPVHHQGLRLALGAFRTSPAQSLYTEANEPPLHIRRLELSLQYALKIKTNQHNPAFKPIFQPQYLDLYEE
RPSYIQPFGVRIRTHIKNLNVNLDSIHQTLICPVPPWRLNKLQVNLDLSKHKKADTFPHTYQQAVAGIRHFYPTHNPIYT
DGSKKDGHVSAAIVMGQSHHGIRIPDQSSIFTAEAKALFLALEHIENAEGHNFIIFSDSKSCLLALNSFKLEHPIIIDIF
IKVNELQRKFYNIVFCWIPGHTGLLGNEQADKAAKTALTGKLMECKIPPSDLKPLIKGYILNKWQSEWDQCPENKLFEIQ
PEIGKKSNLFFKSRHDEIVYRRCRIGHTRLTHEHLLKGEEPPKCLYCNRNQTVKHILVECPIFNVIRKQYLSGETLKEIF
LNVNPSKVVEFLSKGNLKKLF
>I-3_DR_gag#LINE/I 404-1624 [Danio rerio]
MKNKYLNIMAKNQNTKKRILEQDLETELRTGFNFPSENENWQRFIVLESLTDDMPLTKLSPFAIHKGITGIAGTVKDIKK
LRSGQILVECARKANSENLLQATTLAGITMKAFPHSTLNNSKGVIRTRELQDMDESEIALELKPIGVIDVKRIIIKKDGQ
MIKTGTYILTFNRPQPPEKIKLGYLSVAVDIFIPNPLRCFKCQKFGHGSAGCKNKTTCQNCGEDDHGMNCTKPPKCKNCL
GDHAASSKNCPIWHKEKEIQKIKHTRKMSYPEARKIVEALPAFCLKKPYSVAVTPKTQSISCQTDLTWLFKDKPQTISNT
KNSTSQKTKNELIQTGPIQDSYLEQKESKVKKKTPSTTNQQPNQDKCRTHKDDNPKDIEMTETTTSRSRSLSPKCKNKGP
VPIFPT
>I-8_DBp_gag#LINE/I 207-1391  [Drosophila bipectinata]
MPPDINRLFKSSDTGPKFIIIKRTDNKTFEHVCPFLIKKVIDYTCNGVVESCKKTRIGGLLIKTKDTLQAIKLKKLSTFH
EFPVSVNEHNTLNFSKGVIYSNDLRNIEEEIILQELKSQNVTEIRKIKKMDKNELKETGLIIITFASLTLPETMMIGYEK
VNIRPYIPLPLRCRNCLRLGHPTTACKSNTLCNNCSAEKHTSIDETCTNEKFCINCKFDLPTNKHSPIDKACPAFIKQKE
LTSIKTLEKVDHKTAVKIYYTRHIHQPALYSTILAEQPSKNATIPTKPPSHFSDHQTAXKPSKNITPAQQQQRKATSYDD
LEVPMDTTPTLASTSKSKSTSTLSSSLSEELKLKIYTNKQNTLAKPLKSKEKNEQKPKKNNKITNHLLNSDSDSI
>I-3_DR_pol#LINE/I 1597-5307 [Danio rerio]
RTCTYISHLRINNHIIQWNCRGLKTNFAELQHLNSVFNPLAYCIQETHLSPNDALTFKGFNMISICGPNIQRPSGGSAIL
VRNDIIHSQVVLDTQLQATAVQLTLHKTITICSIYIPPHEAVIPQELDKLISQLPTSFLLMGDFNSHNILWGDDHCDAKG
RRMETFIENNDLCLLNDGTKTYLHPGHGTYTAIDLTICSADLLLDCSWRVWNDLCGSDHFPIILTFPQLDVTSRPSRWQL
KKADWTTFQTXCCEKFMSATQDNQNSIEDFTQQLIAIADETIPKTSTKPQRKTNPWFNEQCKKAIETRKKAERAFNKHPT
TTNFIHFKICRAQARRTLNEAKKQSWKQFVSSLTYYTPMKKIWNMIRKMKGKENGTRIQHIIKQGILQTKEMDIANTLAE
AFEKNSSIENCLPAFQIIRAQQECKELNFYSDNKEVYNQPFKIKELINSLKCSHDTAIGPDKIHYQFLKHLPYSSLCLLL
DEFNNIWSSGKIPASWKEATVIAIPKPGKDHTDPNNYRPIALTSCLCKTMERMINNRLVWTLEKNKQLTDYQCGFRRGKS
TLDQLIRLETYIRDGFIRKEHVVAVFFDLEKAYDTTWRYGILKDLHQMGFRGKLPTFISNFLTRRNFRVQVGNSLSNTHQ
QELGVPQGSILSVTLFSIKINSIVEIIAPNMFCSIYVDDLCICYRGKNMNTIERQLQLNIHKINQWAVENGFKFSKTKTV
CTHFCIQRSLHHDPELFINGNMIKVVKEIKFLGLLFDNKMTFIPHLKFLKNKCLKAMNIIKVLAKTNWGADLTVLLRLYR
VLIRSRLDYGSIIYDSARKSYKQILNTVHHQGLRLALGAFRTSPVQSLYIEANEPSLQNRRLKLSLQYAIKLKANKNNPA
YTAVFEPQFVQLYESKPKTIRPFGLRINSHLQNLNLNLDILKQIHFNSLPPWNLKMPIINMELGHQKKGVTHPNMYKQQY
LDIRTQYSQHIPIFTDGSKMESNVAAAMVTGEQSHGISLPKECSIFTAEARALLLALEYIENAQQKKSIIFTDSKSCLQV
MESSTNDHPLIDNILTKVHQLQNQFYHIIFCWVPGHVGLLGNERADAAAKDALKQVINKCQIPPSEMKPFINAYILNKWQ
KEWDALENNKLHEIQPEVSHRILRHFKNRFDQVVFTRCRIGHTRITHGFLLQGENPTQCLCCKTPITVKHILLDCPAFTD
SRRTFYEMNSFKDIFDKVEPEKILEFLSCINTKNLI
>L1-1_Crp#LINE/L1 4-2875 via tfasty with L1-8_DR_pol, 6 frameshifts and 4 stopcodons. [Crocodylidae]
NKLLSQKVEYALYRLHQDYWESGERAGRLLAYRLKSKSNHNKISAIRDSLGNMHMTQRQINQQFSQFYSNLYTENLNVTS
EETDMFLDFIPIPTNFRDGEEILEAPLSLDEITLALKDMNNNKSPGSDGFPVEFYKKCKDILLPQLLNVYNDSKNQGTLP
TTLCEAIISVIPKPGKDSMNCSNYRPISLMNVDTKILAKTLSHRLEQVLPKLIHKNQVGFIKNRHGSDNVRQVIDIVAAV
QNSKVPMALEAFDCVSWRYLSCVLQKMGFGKEFIRWIQLLYTNPTSRVVTNNMLSDPFPLQRGTQQGCPLSPLLFDLALE
PLATAIRNKGDIKGIKVGDSEHKILLYADDALILLSQPERSVPALLSLINNFSNLSGYKINWTKSELLGLNKYTTKDMFS
KWQFQWQSEHITYLGIKISKNINVIVCQNFQKILDVILQDLNKWSSLAISLWGRVNILKMNVLPHLIYLLRNLPVVIPQS
YFVKINRMFNRFLWGEDKRAxLSSKKMQLPIEMGGFHLPNLQQYHNAFLVSQAMYWMTDITDNSPVWVEIEQALMFPLPL
STIISSTYHRLSNSLIPTIFAARQAWKIWHNLLKFHPSLHQKASIWGNPFxSMGPTNxCGESGWIKGIVHVEQLLVGNHI
KSFSELCDEFDLPKTVEWQYMWLHQVLENQFGPEALGDSKYSNILFFALKSASLPHSVPSLYEYIMSHNRPDTDYLRLKW
NEDLGIQMTESQWKSAIHNIxTSTIDLRLCLIQQKIFSSALGSSKLKKLNILPVDTCWRCDALQAMLGHMFWSCPIINSF
WKEIITRVNMVLNTALIPLANMCVLGYIPKEFKLNPSQIALLQQALLVTHRIILLHWKSRTSPKVEIWYNEMAQLASMER
VMFSRLNCFEKFGAIWKEFLVKIFCCTLLFSPSTPLSSLLLSLSSSLPLYYLLFVTDMYIVQVSCIVDINCISLFCPA
>Karin_TM_pol#LINE/L1 2507-6178 [Triticum monococcum]
MRGIFWNSRGLKDLAKRRFLAEAALEQKLDFIALSETGRENFAPQFLSSLVGGIDFDWHCLPPRGRSGGILLGVRCDSLQ
VRSGVMGDFAVKFRVRSKIDGFNWALVAVYGAAQPELKPEFLADLVRIYGSEQLPILVGGDFNIIRRREEKNNDNFDGRW
SFMFNTIIESLDLREIELSGRKFTWANTLPNPTYEKLDRVLASVEWEQKFPLVTVQALSRRISDHTPLFVDSGEPNHMGN
KNTFSFEMSWFEREGFLDLIAREWARGAGGATAIERWQNKIRHLRRFLRGWAKHLSGVYKMEKDRLLSLIQALDIKAESI
ILLPAELQVKNEAEKRLKELLREEELKWALRAKVRKVVQGDANTQFFHLIANGKHRKKRIFQLEQDVGTILGQDNLKTYI
TEYYKQLFGPPEDNYVSLDESRTEDVPQLTAAENDILVAPFSEKEVFDAIAQMKNNKAPGPDGFPAEFYKKCWHIIKGDL
LPMFNDLFSGQLHLFHLNFGTITLLPKKTDAVRIEQFRPICLLNVSFKIFTKVGTNRFTQIAHSVVQQSQTAFMPDRNIL
EGVVVLHETLHEIHSKKLHGVIFKVDFEKVYDKIKWPFLQQSLHMKGFDEAWRRQLESFTQKYSVGIKVNDDIGHYFQTH
KGLRQGDPMSPILLNIVVDMLAIFIERAKENGQVGGLIPHLVDEGVSILQYADDTIIFMEHDLAKARNMKLVLFLFEQLT
GLKINFHKSELFCFGRAKDEQEAYRQLFGCELGELPFSYLGIPIHHRRLTNKEWKSIEDRFEMKLSCWKGKLMSYGGRLI
LINSVLTSMPMFLLSFFEVPVGVRKRLDFYRSRFFWQGDELKRKYRLAKWDIICRPKNQGGLGIENLEIKNRCLLSKWLW
KLSTENDAMWVQILRAKYLQTKTLSQVSVRPTDSPLWKGLMKVKQAFFDRMRFAIGNGSSTRFWEDTWLGNTPLAIQYPS
LYRIVQRREVFVASVFQYIPLNIQFRRTLADNRWEEWLHLVRRLMEVQLSQQPDELRWKLTRSGAFTVKSMYIDVINSNS
IPTSKHVWAVKVPLKIKVFMWFVHKQVILTKDNLIKRNWTGPTRCSFCDRDETIKHLFFDCPLAKVLWQTVHIAFNITPP
NSVNALFGTWLNGIESDLARHIRVGVCALMWTIWNCRNDLVFNRISRIHFLQVIFRTTALIRSWSLLTQTEAREHLVTGS
FRWEMVARDIFNRFGWRSCNRIGM
>L1-1_DV_gag#LINE/L1 736-1764 [Didelphis virginiana]
MASDPRRAPATKGSKRKPTTLDSFCTXKGTQGTEETGEEGRQGTSPKAAPPSQGENCPQAFLELQSKVMRMEEIWQERWE
AAQKENNSLRARILQLETEAQKSNEMMKARNEQLEAVTAENQSLKTRIEQMEANELKRQQELIKQSQKTDKLEGIIKNLS
DQVTDQENRSRRDNLRIIGLPENAETNRNLDIILQEIIQENCPDVLEQEGKIDIERVHRTPSTLNPQKTTPRNVIAKFKS
FQAKEKILQEAKKRQFRYQGTPIRITQDLAASTLKDRKAWNMIFRKARELGLQPRIIYPAKLTIYFQRKVWAFNKIDDFQ
EFVKKRPELNGKFDIQTQKPRET
>L1-2_CR_pol#LINE/L1 639-4955  [Chlamydomonas]
MRRPKQAAPGPRPLRVGSHNVRGLRKRVPHLGCSRLHALLSCWERQRLDVVCLQETHVLDSDIDLVTADLAAAAQRLHAR
EWTAWWAPAQKPEGRRVTGGTAILIRSSLLQQGAMVLAGGAAAVSVAAGAWAGRGVSLQLQWGGHTFTLTSAYFPLASTA
QQAFIREWVGLRASGSGEHLLAADFNFVADVALDTVTGRARSDGPAAAALAAACPGLIDVLRRRHPARRVCTFFHPHGAS
RLDRILCSGGLEPQVLECGVAAGVPSDHMLVTVALAASPEAAPPARSLPRAHLGFRDFKDLDRDYRAWLGTALAARPTDP
VELLEWWPALKRAAATSANRLSREAVTRRVAASQREAAALEAAAAAAAAVEAGGDVQVAAQAAVRARCTAAEAAVAAAAG
AARRTRHAWLRGGEKPCPLLTRMLRPAGGPRVIAKLKQPDGTTTSDPTVMGQVMARYWRDVSAAPPPAPDARTQVLDALQ
QHGRRCTAEEADQLGRVAVSAAEVRAALAAAPAGRAAGPDGIPVELYQHYDSDFAPVLADVFTAVGEGAGVPDGLLDGVW
SFFFKSGDPTEPSNYRPITLTDTDYRTLARVLCLRLQPVFGRVIDPEQTAFLTDRRIADNVLLLQLTPGLLKAAKKAPAV
AAFLDFYKAYDTVDRSFLLACLERMGVGAGFLTWVSRLLTDTRGAALVNGRVSGWVPLMAGVRQGCPLAPLLYLAVAQAL
LSWLRSRGHGVLANLASVLASQYADDCTPFLEGFQAVPGFLADMDVFRRASGQRLNMTKVELMVMGTVGGAGALPAGMAG
PPLPPGWRVVPAAKSLGVHYGDWGACSPPVTFEAVMGVLSKIARMPVSMFGRAAAASAYALGKVLYHLEFAGLPQLYVVD
RLLARVAAVVDRRLSPAQFDANPHARPAGLSIELMQLPPAVGGAGLLPLVPHVKARQAGLAVRCVLGVCGLLPYVPPWTR
VAAAWLRQVHPAATPLRLLVRGAADRVLNKPLTPAGKPFARLLKAMTALPAVTLVAPPEPGAWVSHVPLWANPALCEDGR
TWEVAFADLFALPGLACVGQLVAAHDGLNELRQALTRPWAEGSRSGEACADMYVTAVWRRVLHWSTRARLPSPLPGPASP
QEAADRFAAAVALLPAGWAAAARAAQLARGPAAALPLPVADVVSATAESVQRVVRGLGWLQCGGPPILLTAYTVKAGTVL
QMAPQLAALKAKHLQYVCDAGVSGVGAALAAGAFVCTLARLWSLKWENHHKEALWRVAANACWAFPRHASERARGVTVDP
CWACGVDMQDGDRRHWFWDCTVALSLRESMGMAMGFLPEEALSAFSREELWLVRPPAGLAPPVWDVVCLAAMSALDFGRQ
RVVMAGLAARAKLPSARVLSIGLAVVADFWGRLQTFVTLGIRPKGWDAVPFAHPFISRAVGDGMVLRLPYDADSPPPSP
>L1-1a_Cis_gag#LINE/L1 1096-2472  [Ciona savignyi]
MNDGIPEIEAKLERSIVFQLTGTVEHMSVSSFMELFADGAPMADMSQIVEGVIMDNFKDCTFLVTLKEQSGEVVIPEKRE
IIHYFNTNDINFTTDKGSTMSLKAELPQGESEVVSLHPVTADTCKEKLEAMINNQNWGKIKNINYGTHRNFNKIKNGWVN
ITLTETNIKNIPPLIKIGGRTITVTRPGEEHMALCRYCKQRGHTQNKCPKKGFCVECKAHGHTSRNCRTSYQEPRPRTVF
HSSCNTAQLVRTPNRNANQSQWQTAKKLPEKQMHNTRNAQIKLTNRFGILQESQHSEIEDDLECLRKLVGSMDESIFMPE
DFPDITTANSTPKNDNTNLPKRRRRRTKKRGSTSNPSSQEKKIVYYNQIQSTSNQIKREVKQTETVNLSDSSSENEASTI
NDIPEITLGPRLPSAVESVYRTPENTAPFPPIPNRTLTDITKFYTAEGLQSPKRPRSGT
>ATLINE1_11_pol#LINE/L1 1756-5397 (replaces 3319372_Ath, which was a subsequence) [Arabidopsis thaliana]
MSIDIFCWNVRGFNSSSHRSGFKKWYRSRKPLLGSLLETHVRLPKQQKFLNALMHGWLFDNNYDFSVLGKIWLLWHPSVK
VSILFKSLQMICCEVQMPNCSDTMVLSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGF
NVDRPTRIFRETILLASLTDLSFRGNTFTWWNKRSRAPVAKKLDRILVNDKWTTTFPSSLGLFGEPDFSDHSSCELSLMS
ASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQS
VLLASPCPSNAAIEAETQRKWRILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQN
LENHCVEYFQSNLGSEQGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWP
IIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFM
PGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHS
AGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLE
DFAGWSGLLMNTNKTQLYHAGLSQSESDSMASYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSF
AGRVQLLASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLY
LRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWFDNWTPFGPL
IKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQALSLHTHLTNISMPSDAQDLDSYDWVVDNKVCQGFSAAATWS
ALRPSSAPVPWARAVWFKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDFANFLWFTV
SSRLGVPPINLASWQHLVDWLCGGSIRSPTTLRKLVAHSVIYAIWKQRNNLHHNHVYVLPSVIFKEIDKEIKNSITARRH
KKRFRPLMQLWLL
>38346464_Osa_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MAQVCKADLDCYICNKKDSHLATKCPVLKLPKPTCSLFGFGKTEFGFLQISGFGMNVQSPSTAPMALVSIHGGVLSREIV
QAELAHRIRPDWKWEAVPHGDNSFLVAFPSFEELKRMDDVEFRLKNHGVSMTIIEWKTPDDVIPAYELDEVWIHVSGVPA
PWHHYLAFWALGCVIGATQEVDMLTYRRTGVIRMKVFMHSSVVLPITTDVVFGKLGYPITYALENESFRPAKIMEVDQMD
HDGDTQEDQDDSSRDGHHDQVHKKARNSENTTPPKEQSSDVTAMQLALTPLVNCQPLPPPRPVIADEKEVMTARSTPRIM
THTCSYKPDGIPSAPEQLRTQTTGSEHLPLLTPRSAAATRTTAVLSPVAHEEVLQEGKINTSSPVPQLTRASGSKAGSST
PRRRSMRSNVENLDGIARGDDDSLLKAMKRTAVRNLDDSFAAREVSAPTNQLHSASRIASFQQGTATRPSQSLPSLPHVN
VASNLKSLGVSLGTSNVSFLLNVLKHIEVDRTKVATKPRENNQSISFVSEVDPFMTSDDEGDDIDGALLAHLVKDISEID
MEDVDQSNKICDLLVSTRKSKSSSKRKERKSHPKNPKTTKIVSS
>25405244_Ath_pol#LINE/L1 gi|25405244|pir||E96519 probable reverse transcriptase, 16838-20266  [Arabidopsis thaliana]
MLASDHSPVIATIADKIPRGKQNFRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVEKLTNCRRAISKWRKSLIPFGRQT
IEDLKAELDVAQRDDDRSREEITELTLRLKEAYRDEEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENG
IWSIEDDDIQNIAVSYFQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALFF
QKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISET
QSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYK
VLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQC
GIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRI
NGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFR
NVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWN
DPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVK
SGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTL
FQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAPYPWIIWYIWKARNEKVFENVDKDPMEILLLAVKE
AQSWQEAQVELHSERHGSLSIDSRIRVRDVSQDTTFSGFRCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAANVRRSLS
PLHTEMEALLWAMKCMIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVYLEELQSDREEFTNFSLSLISRSANVKADKLA
RKIRTVPHHVTYVNNIPRDWLF
>ATLINE1_2_gag#LINE/L1 2-1579  [Arabidopsis]
MGERGDFRVPVTSSQDAPMMDIGDGGRPSGDPLDVVESWASKVSGSNAGGRLSPERVLDKEFVMARMRLEFPDGEDGEPV
ITIAQEVLDVMNGLWKQCIIVKVLGRHIALPALNKRLREMWNPKGGMHVLDLPRQFFMIRFDLEDEYLVALTGGPWRAFG
SHLMVQAWSPDFDPLRNEIVTTPVWVRLSNIPLNLYHETILLGIVQGLGKPIKVDLTTLHHAKARFARVCVEVNLSKPLK
GTITINGERYFVAYEGLSNICSGCGIYGHLVHNCPRRVVERTVAPVTVEVPVNVSGGTPQDDGFTVVRRTGRKGGAPENS
GVATAGRLSTNLERNLRDISGRANMESIDTSNSFGNLEEVIEGSVREVAASVDANKENMMNGNYAKKGKSVAQGKAWAPV
DLMNKIRAGKKDKTAGGKVGEANGPKPRNGNSNRPVRGLVFGPTRKEIELSGSGKRLRVDESSVYRQGGGGSPEKESRGV
DGVSMSVAGEAVAKSSLVDLAEAPQNREVEMQNGLSAVVATSLAA
>ATLINE1_10A_gag#LINE/L1 46-1524 [Arabidopsis thaliana]
MALSLSEGDFLPNSHRFNSPRRSSSPTIIICLFSRFYDGGYFLPISFHGSYHCPSLSEGNYPHKPPWIQTYIYFNSLLLL
PFLQFTISQTLSSTIMSDRLRKSVQDLNLGIDDEPVALTSEFCSQAAYVNRFSLVVTTVNPRKQNLRALIGQMPRVWGFP
DSCVGRIIDKGRVQFKFQSEEAMNLVLRRGPWSFNDWMLSIHRWYPNLSEAEMKIIPFWVQITGIPLLFLTNAMARCVGN
RLGHVADVDFDENSNHTGFVRVRINWNLDDPLRFQRNFQFADGENTVIKFRFERLRNFCTKCGSLKHDIKVCTLSFDNED
PVETSDDDDADDDDDHHDDNKEHDISDTDTLQTVDPATLIPGLQSSLSKGNQRQVQKLSDGYSVPCVIEDTDLTVERLRY
LHAKLAGVKTDAPVEKDLLLESSDNAQNEFVFMKRKRVRLEEMYQQVEAADEMGVLSQLCKKGRKTESAGSCSIHDGRDG
GAGGPVPLRDPI
>ATLINE1_10_pol#LINE/L1 1496-5596 3 stopcodons [Arabidopsis thaliana]
MRIGSWNCQGIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLALLWKDSVRLSN
LYQDDRHIDVHISINNINFYLSRVYGHPCQSERHSLWTHFENLSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGF
RNMVSTCDLKDIRSIGDRFSWVGERHSHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPF
RFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKAMSSVNRTERRTIS
HIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYES
NGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSY
MKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHS
LKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPL
SPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKS
MITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMS
MPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNS
LFARIMKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTVxISQDNFIASHPPRPLNVVTPTLDITV
DTLISTQGSYRYWNAHLISQLVSPDDHRFVMNHHLSRIVHQDKLVWNYSSSGDYTVKSGYWFLFNDPTNIxVRPVVPHGS
VEIKNKLWKLPIIPKIKYMLWRTISKALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGH
TFSQDTEENISFLINSFSNNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNEWLQSVNRREDASVL
TRSSHRANVRWKKPVFPLVKCNFDAGFTGNNTQSTGGWIIRDHAGLAKAWGSSIVxNGTTALEAETKALLIAMQQAWVRG
YKCVQFEGDCEILIKAINGAISRCEITSLLRDVDFWASRFSTVVFTFTNRLCNNTAHLLASPLYSCYKFQSNSGYQPLWL
KNSLCKD
>L1-2_Crp#LINE/L1 1627-3809 (fragment) via tfasty with L1_Lme, 5 frameshifts and 4 stopcodons. [Crocodylidae]
LLCRVYRPISLLNVDYKILTKLLALRLSKVIPSLIHADQVGFIKGRLASDGTCKLLHVLQQCHLSDSPAALFSLDAEKAF
GRIEFKYLLLILQKFGFGEKFINWISILYRSPLTAVSTNGVISPSFCLERGMCQGCPISPLLLNLALEPLAAAIRQSTHI
EGIKILDQMYKINLYADDILLLLKNPGNSLSHVLALFESFGQLSGLKINWDKSSYMNVSKRPDPSKCFHSQLRNCKVIDY
LGILVCSNLYNMVQINIDKILTNIKKNGKMENTSLISLIGRIEIIRMNVCPRINYILSLLPLKVPASVFKCINKMIFNFI
WQSKRPRVAKALKRAWCHGGVGVPDFYLYYLAFHMRVLKYWMYETISGDKPIWLSMEEKLASKFGSLYSFPFLKSLPRPL
KLNIVFNSSWSALQKIKALTSSDLTRSPFIPLWGHPQLKFKDNKGISDIWVEKDIATIKSIIKDGSLAPFAYICDKFQLC
NEQEIFYKTFVHWLNKTYGNIWNNLSHTNLERCVLYSKDKSHFVGNTYKWFNKLLYPADVIIKGKWEKDLQILLTVEKWD
SIWKSLCKTSNSLLLRFFQNKILNRFYWTPERLFKAGLALDDYCWRCGNQVGSLSHILFFCPKITSFWLSICxHxDTxNx
HGPSPDLCILGIMDSLPLSVPMKKWLVNFLVFKLVIWRKWKTPSVPSFLEWLKELIHVALMEKITYANRHNWAQYEEIWC
NMNLLLSF
>L1-5_SBi_pol#LINE/L1 2825-6394 via tfasty with LINE1-39_ZM_pol, 8 frameshifts. L1-4_SBi_pol over 90% identical. [Sorghum bicolor]
MDPAHVLNWNVRGLNSAARQDAVRVIVNSYKIDVVCLQETKITVISRQTLILSMLGSDFDNNYIFLPSVGASGGILIAWR
SCLGAVSASRVDTFSTSVQFNFACNRGSWWLTCVYGPQDNQAKVQFLQELRDVRAQCTGPWMVAGDFNLIYKDEDKNNSN
LNRAMMGRFRRWIDDMEVSEIPLHGRKFTWTSSSASASPTLVRLDRVFCSLDWEEKFPGCLLQSHASSDSDHCPLILGLQ
DTIASKKRFHFEAFWPSLDGFQEAVKEAWDSVQPRPCPLETLALKLKATARGLQSWSQRRFGHIRSQLLLAKEIIHQLDI
AQESRPLQPNELWLRNNLKKHSLALASLLRTIARLRSRIGWLKDGDANTRLFHQHARYRKKKNFIPKLQVGDHIITSQED
KAAAVLEFYENLIGTECDRERTINLDALGNPSFELEGLEMPFSEEEVWNTIKDLPSDKAPGPDGFTGRFYKSCWPVIKSD
VMAALHSLWNRNFRNLWKLNSAYITLIPKKPDAVQVKDFRPISLVHSFAKLVTKILANRLAGRLDEMVSPNQSAFIKKRF
IQDNFMMVQQTVKFLHSQKQPRILLKLDITKAFDSVSWAFLLEVTQKMGFGPRWCDLVCGLLSASSTQVLLNGIPGESIR
HRRGLRQGDPLSPMLFILVMDVLNRMFTRAAEAGLLQPLSRRPIQHRISLYADDVALFLRPTAADINLSIQILQLFGDAS
GLRTNVQKSNVLPIQCAEEDMACIQDLLPCEVLDFPCKYLGLPLTIRKLTKEQVQPIIDKVADQLPGWKADLMTRAGRVV
QVQYVLTGILVYVAMATDLPPWVFKAIDKIRRAFLWRGRKEAKGGHCLIAWPKVCRSRELGGLGIADLKSLGIALRARWP
WLKRSEPNKPWANLPLQVSKEVDGLVSVAVITEVGNGANTLFWKDRWLDGKSIQDIAPLVSALVPKRRTSRRTVLEALTD
EKWIEDIPGGEIGVAGLAQYLGLWDTLNSVQLHEEIPDKHIWRFSASGRYTAKSAYDGLFQGAIHFEPYERIWKSWAPPK
CKFFMWLVAHNRCWTADRLARRGLPHPDKCPLCDQEEENIHHLLIGCVFSRQFWFSLLSRFGLAALAPQPSDQSFEDWWR
KVDGATTGDVRKGLNSLVILGAWSIWRHRNDCVFNGAAPNVNVALSMARDEAHWWSSAGAKGLSLLTAGXLV
>L1-5_SBi_gag#LINE/L1 486-2754 via tfasty with LINE1-42_ZM_gag, 4 frameshifts and 4 stopcodons. [Sorghum bicolor]
DLRGRCFNCFSTTHMAATCSSSPRCFACRGLGHRSAACPSRHPRLIHGSRQSMRRPPAGRGQLIWRPKASAPSRLEAPGG
GADAGGAGKSHKRKRRRRARRTRPASGGSAAGDDDGSAGDDDAPAHPLPVPMVGPVKADAAAVPAVPRRILDWSQRLARS
EEDLKRALIVTLLGGPGNGELEIVRATIALRFEIEEAWLTLFPWGPARFLLILPNEEIAGTVFNEGRPIKSSSARLHVMR
WTRCFQASAASLPVAVEVQLEGIPAQAWDVATAEVLLDELCWMLEVHPRNADRRDVFTAKAWCSDPALFPPELKLEIVEP
RMASSPDVRTLTYPIKVTVRPLGRPGDPQDPPRPHxRxGSGSSPAGRNSSSPPPPSSPAPAAGLGEASSSGLPRRTSVHE
RLGPRVQASAARVPSSAFVRVIDEQPNASDGASRRDITSHRHEEVRAEPKATELADHAVTTGPSPGGSxTRAEVGMASVG
VDTTGEGMQDSAVGGSVDVMRSGSEIPRELSxGPSASPPAVAGSVGPQVVAAGSPTPVGPDAVHVLAQVEASSSASPPPT
CPAPELHFATPPPAPELLIATPPLGSKGCCAALPRAADPSANAPPGCIPSPPPSATRQRGQKVYSRRRPGRGARGAVAVP
APAPPSPASQFVEALSKMPGGLLPIPHINKRKRRKRIQPPSQEPRRSRRMAGIPVQFEEACPPHLKKRVMRALDMNVEEE
REQISQRALEEYAQRFRQPLSAPHTKAMAALFGWDIP
>L1-5_VC_pol#LINE/L1 2229-6743  [Volvox carteri]
CTYAKCLRHVITSCRPPAGRLPTRQHLAGGTTIPLLPFGHWPGHGPGPYVMPRNRHSNRRAVQLLRIGSHNVRSLLGSGY
NNASERTAQLIRQWARQRLDIVCLQETRVTAHRVPQARTILHNLSRAFHLGQWVSWWDPALDSRRGGGTAILIRSALLTS
GALTFPGTQAQPTMSGDGRLLRLPICWGDHTFTLISAYLPSADPPAQRTFIQQRLRPLMADAGLHIWAADFNFVNNPDLD
ASTPSARRNDVNTTAEFNVTCPGMIDTFRLIHPRRRAYTYVHPAGASRIDRIMVSQALEMAVYGSDTASGTPADHRITHT
TIRAANSTHTPGPGLPRTRLHFLDHDDLCANLNMWVNNTAESAPTHPDDLIQWWPGFKRALALSAGRLNQQARMRQLIGA
ADEAAAQAQADSILAEAEEGDASALPRAVLARSAQADAAHRAVAGVTRRTRYNWIRTGERPSPALTNQLRPPLATRRITA
LRRPNGTLCSNLQQLPNIMADYWQQIGAQPHTDPVARSRVLQALRARGRTCSPEEAARAGAQVVTAEEVQAALQAAAPGR
APGPDGIPVELYQRTNCAPLLAAVFTAMGELDRVPTGFLDGIISSFFKADDPTVPGNYRPITLLGTDYRTLARVLKQRLL
PLFNRVIDTEQTAFLTGRRIADSVLLLQLLPALLHMERRTCVAAFLDFYKAYDTLDRDFLFACLDELGVGVGFIAWVRRL
HTSTQSAAIVNGYLSYWVIIAAGVRQGCPLAPILYLAPAQALLTWLQYQQIGISLRDIHLAASQYADDCGAFLRRLADIP
RFKAVMDVFHAASGQRLNNRKVELLPLGTFTRNTRPADLPPANAIGNHLIIPVTNLTHMANSVGNEQVADEVEQQPIVGS
VVGDFRVLSVATTLGIRVADRPSLEQQSVSLSPVRNSLQLVAGMHLSAFGRAFAVSGYSISRVLYHLEFMGAPSNTSMNN
LLGDCAAVIDRRQPPSVRDNAERRRAPGVGVAYMPFPPAIGGFGLIPLHEHLRARFACLSCRAILGMAGMLETNPMWTRV
LLAILRHIHPAAHPLCLLAVRGDVRDGRVTTILGRPVPNDCPALTRILSAMTSLPQPVLLDAQHLAPGPWCYHIPLWGNP
LLNDAQLDEHFGDLRNLRGLDTVGMAVRCHTAMSSTWNLVRMVGAQGLTEAQHFHCTNLFRTIVVRGILGLTPRHPLPAS
CQSGATAITRISQLIDRLPPQWTIAAIVAINDRNHEIPPPQEAWKRIVKSLGWRFGQVLLHFSQVTVKFATTLLMAPSLR
TLDIKHEDFILDAVDIVLSPENLANTLLDFRRTLSRMWRLRWDNEHKEAFWRLALDGFPAFPMHRAQRQRGIPAAMCPCG
VRMLCGDRRHHFWDCTVALALREALQNELEFPDLFNRANLWLGIPPTWICSCVWEVVCLAAISSLNLGRRLLFKEGLQTN
MPISTPSLNRITYEVISDFWARLTAFAARDYLPKHWDHVPHNHPFLYVNDADMVACRLPIYNDEV
>L1-6_Mad_pol#LINE/L1 584-4782 via tfasty with ATLINE1_2_pol, 3 frameshifts and 6 stopcodons. [Malus x domestica]
MMGMRSVNIFRGGCLVLDDVGSLPSQSVLLLSMNIVVWNSRGSGCTKFQNNVTNLKQNHKMEILAICKPRISGTRAFYVV
KSLGFPSFEIVDANGFSRGLWLLWDNSKVHIDVIGTTDQSISACVRGAGFNPWLFTFIYASPCIAKRRKLWDYLNGVADC
HQMPWMLAGDFNEMLEVGDKLGGAPLCRIKDFKSWVDTNSLLDLGYVGPKFTWTNKKTLERIDRGLCNMAWRNLFPEACV
FHLPRTKSDHCPLKISLQSTHVPNPLQRPFRFEAMWLRHDTFDELIAENWGNSHGSAMDKTCALVEPLKRWNIHVFGHLK
QKKKKLLGRIAGIQKALCRGPNNFLLNLERELISEFNEILNQEAVFWHQKSRLKWLQDGDRNTKFFHLTMIVRRRRNRIE
GLKNDQGEWIVDPDDLKSLVVEYFQTLFSHGQWSRQVTSLPKLFPSIHLDDIGSLNREIDHAEVKDSLFSIGGTKAPGID
GFPACFYQAQWGRCASDIVDMVKIAFQTHRLPHGLNSTLIALVPKIENPQRMLNFRPISLCCTLYKVITKIIVARLRPLL
PELISPNQASFVPGRLxRDNILIAQEILYKFRKSKGKKGFLAWKIDLSKAYDRLNWSFISGVLYEIGLPESLIHLIMDCI
SSVKYQVCVNGELTESFTPSNGIRQGDPLSPYIFVLCIEKLSHIITNEVNSGQWKHVKASQFGPGVSHLFFADDLMLFAD
ATPKQARVMKRCIEKFCLASGQAVNFEKSMLYCSPNTCANEAREISAICGSPLSDNLGNYLGMPLIQCRVSKSTYKGVID
KVQSRLSSWKSNVLSMAGRATLIQAVTSAIPVYAMQTTKLPVSVCEHLDKLNINFFWGDSQxKKKIHLCQWNLVCRPKCV
RGVGLKKTAEMNQALLAKIGWRIHAKDTGLWAKIYEAKYLQGNSILDTKLHEKSDCSYTWKGILYGTDLLRKGMKWRIGK
GDGVKFWKDPWVLNDPLINYVDANNFPEEDFPISYFLRDGWWDVSKLRYAFPENLVQKIISWPAGTIGAGEDKLIWGCTS
NGTFTIKTAYNVLYDWxKKPVFYWFGIWTLKIPPKLKFFLxLIASRxVTTNEQRTKRNLTVDSSCNLCSWPLETITHILR
ECSRAECIWDILRIPSQLRNTFNLDLKAWLMANVTSKVMWSDKIAWNCLFVFACWYIWKWRNHQIFDVDFSLPSDPKKVI
VGAASEWMDSLLKIDKPPSRMHVMLKWEPPIFGWHKLNVDGSRKMVSSNIGAGGILRDHNGDCLGGFSINLGQGQIIEAE
VWGLYFGLQLAIEKGISKLIIEMDSSSAVLLLNQSVQDTFHPLATLLKSCRDLMRRIEHCELKHIFREVNNVADQLAKxS
YNLDLGLYSFQFPPQWLMQHLMDDLVGAPMGRSIVINAMY
>L1-6_GM_gag#LINE/L1 91-2175 via tfasty with L1-3_GM, 2 frameshifts. [Glycine max]
NSLARQTNWRERPDISSFYFTRFPEEANEKDLWAHFRKWGQVREVFISKHRNKGGRRYGFVRFSGVKDVRRLERQLDNLV
IGGMKLYVNIPKFERGRGTSPDTRSAPKTWRDGRYKGNHENRASRQHLLQPRAPSNSYRKAVLKTAAGQTRGPQIATYSP
GGSQTSIHLDIPAEAKRWFSDAWVGRVKNMKTLHEAEEEIAWELGQEVAPKYIGEDMFLLLGLPDTRAEETSAEEARHGS
TPFYTLEKWNPSMKTGQRLVWVQCWGIPMIAWDAEHIKKMVAVIGEPVVDDDVDELRRLDRARVLVRTAWRPPLQHTVNI
RIADETHQVHIAEEAGPENHRCRCHARDSAGSSEEVESEESDDGEQITNTVEENDAAHARHHTGGDCSEGGTRAGHQRQS
PIPIGPCDEPRGNNPGQWEHSANPNDTVAIDLEAAKGAASAQQTAEEGGTDYANEEKGSDQKKVYEEDSPKKTPADMAVE
LVSAEHAPRSTVQTNKSIGGPAPTNFEGPRALNAGSNHTNNTREEIGTAWEGYISKEDGDQEADESGPPILGLTKLNTPA
TQKKQNLSPATNKNENRALPMVYSRSKGRKKQQQNQKKEDKADNANQDHTELGLENISMIRKEAGKPNSRITTSPDDNPQ
ELQEAEHHWQMIQQMGVTADTNHERFIEMISDMENRDRKEAEKLGNRSVPHEYFN
>L1-5_Cis_pol#LINE/L1 2255-5790 via tfasty with L1-4_Cis_pol, 1 frameshift and 1 stopcodon.  L1-100_CSav_pol near-identical. [Ciona savignyi]
MDITNNNEIXXNNYXLNXXTININGLKXKLNHLXNYINNNNXDIMCIQETHRVDIETXSKVENXFHLSAFFNTAISSDPK
XKCHYGXXIXXKQHILNNFNVAHSILIENMXNIVTLTNNNSXIXLYINTYLPCGXKNRXXRKEYINIIKDSIQVSDTXYY
IILGDFNMITNDLDIKNNYDKRRKVDRTAWVNLEKEKFITDTFRRLNKFEINFSRITNVSASRIDXIYTSKNLNHLXIKY
XHKRNFFSDHNNCPILSLTIQNSKRWGPSYYKINNSILEDNDVIQTMVYQWENWALQKRKYDNILKWWDDGKILLKNIAT
DYSRIKARTEKRNYENAIIELTKQNRLPDSVNRNKIIDILDNNISVYEKKLNQGALIRSKIKEISNEETPTKAFFDYEKK
HQKRDTIYKVLNCNGEITRNEIETVKTIYNFYXNLWGKKPNTVIPENYLNVFSPIVIDDLDNLNKPININEIEIALSDTN
VNSSPGSDGLSYLIYKKLFNTIKYDMEEXFNNIYIKQNLSESMKTSIVKLIHKKGEKTNLKNWRPISILNCDYKILSKII
SNRLKTIIDKIISPNQRCGIKDRRINDALYNIQSVIDSSKYFNKNVXVIXVDFEKAFDRTDPXFIIQICKKLNLPKTIID
WIKIMYTDIXSKIEINGTFTKNIKIKRGIRQGCPLSMLLFLINMEALTRKINNNSXIIGYRLNKIEIKTEQYADDLTIFT
QDKSSIKHIFTELENYGKVSDQIINIAKSQVISNDIISINEIKNVFPNIQITKTIKILXIYFNLNDNCIPKNLEKIEKXI
XNILNINKRRKLXLNGKKAIINTLILPTINTIGDLFXIDKLTINKINNKIFKFIWYPTHFEFLKRNKXYAPYKNGXLQFX
DIQTKLDAFKATRISKLKLLNKITDFWQEWARFNLGSTMKQINKLLYTNSLPNKDFPDPFYKIIRHLFYKLNKQNYDWNN
GKTKDFYAALITEKWENTEIKINDNIVPWKNINLQNKSIKHFFTNIDRDIAYKLAQNIIPHGFWYESRKISNIYNGKILI
RQCKFCRQENDXFEHIFLKCKIVKNIIDKLFQYANNISSKQYNRNDNLILYNKGNNSQKRDLLVIKILSIAKKEILREKQ
KLDIQNIYLWDNVEFVRKILWVVKIKFKRSIRKQIAIFNLNYIQEKLYLNSNFTPYDGT
>L1-2_Mad_gag#LINE/L1 6-1360 via tfasty with L1-1_Mad_gag, 1 frameshift. [Malus x domestica]
MSYRHLSRDFKVEQKVFILEVEDKSFGERIRITERTRIRGYQISFDLGCAAWLVDQVKEAIVKGGQSFFRKYRGHNYQFW
VERFHNKNGDFLVISKSEKEGFVRNILVPKGFNFFGWRSLEDLLSEILRGGKRAGATQRKVKRVGKEFVSSQTGAGPQVS
YRDAVLGGKTATIVAPIRNAKEEIWMKKIWNKRDISKESYSWGSVVVCERQVVHQPWREVEASLRNLLGMEIRLSPFQCN
KALFVCQNEEEATKIAQLGTLAMIKLPDVVLSGWWDSINSNHRKAVSYGGWVALEGLPPHLWTNNFFQKIGEACGGLVEI
DRRTANFGFLLEAKLKLKPNDTGFIPEFVDVADGESVFRVKIRQLSPAKRPNLSAEDGGATKSPNGSLKKDLKIQRLTGA
TLPAKADMQQSVPSPGTRVSFRIGEFECPVTVGADRKYGLNRLLTEDARHEE
>L1-2_GM_gag#LINE/L1 210-2202 via tfasty with L1-8_GM_gag, 2 frameshifts. [Glycine max]
VAVNWRDHSDISSFYFTRFTDDITEKDLWQHFKRWGDVREIFIPNRRNYNGRRYGFVRFKGVSDVQQMARKLDNSVIGGL
KLFVNVPKYNRARRTYENMGRQIKTDRGDMPIRGQRNMQQPQRTTLSYADAVRKKNNTQPRKHEQKQPSPWHESSTSSVH
LSVKKEETKWLEDAWVGRLTNPARFEVLEEELRWELGLDLTPRYLGDDQVLLTGMNEAAAERIMNGGMHGNISPFYSLEK
WKPNLCTGNRMVWIHCWGIPLQVWDKNHIRQIVGTMGDMVDVDDDVETKRRVDRARVLIRTPWPPTIKHVIDVHVDGDTF
KVYVAEECGSTRCEHHSKGSCYSDSSDEQESADSFTGDEFVEDTSFEGTNREPMRASPSNHRPNTPQSLVGVGDTTMTGL
TNGWKQAEDPMDNDEVPRVMTGLNDETTFNATFEVHAAKLPCMESYLNGQQMQACVVHESRQREKGESSGVKCQPPSRDS
VVEGSPTKGKQIVEVVNNGAHDREDRSEQQNMALQCGPQLGQPTELLNEPPTYLGHTPSNNKKAMGCNWQVYSRGSWSHR
RHAKAEGQSLEGSHKQPNIIQQNTQQKYSRSETSGDINTDLEQEASAGSIQTQEALKMWKMIQQLGVTTGNNQDVHHREI
LQKLSSMETRDRLEAERLGDNVRDP
>L1-2_SP_pol#LINE/L1 46-2466 Fragment  [Strongylocentrotus purpuratus]
EDYFFSQNISSLSDDEKKICEGLLTXTECKQAVFAMQKNKTPGSDGITAEFYQVFWNEICDILVAAXNECYANEKMSDTQ
RKGXITLIYKKGDHRELKNWRPITLLNXDYKIIATVLAKRXQKVIGKIIHENQSGYIRGRLAACNVRLTKDIIEYMTRNG
KNGALMMVDFSKAFDVIDVTFIKKCLSKFNFGPVFQKWVTILYTNISSSVIVNGWLSETFSVLRGIRQGCPLSALLFVMA
AELMANKVRENKEIKGLDIDDKGIDLKLLQYADDTLFYVSDINSFENILIELEVFGKVAGPKLNXEKTVLIWIGTACQRW
SLSCFGLRWTDEPVKYLGHYIAPDLQCALKIDWENKLEKMQKLLDNWRKRNLTLFGRLTIIKSLAISQVIHLMIVDTIPS
TFLIKLNSLIFKFLWKSKIEKVKTFRLKWLGMFLDNTTGNWKDMCKHWFDCLGGLHLLLNCNYTDYTLNLLKLRNVPHFY
IEILHAWYLIKKYTSAECQTQKHVDENILWYNQDIVFEKKMLFYEDWYKSGIIYLKDIFKNGTFVSVNELFIRLKTRRSK
QFLIFDYTKLQKSIPKIWINDKHRVPLVFKDHNFSIPHFVFGKSVKPVSHLSSKQCYNMISFEQIKINKCCLYWENVLQK
DVXWSSVFNRNLIGIKEFRLREFNFKLLYNMLPVRKNLFKWGLSYDDLCLKCKKTEDVLHAFISCKANETFFEYLKDLVL
RAFNLXIEIDIVLLLKMNLQTEIDLIMTIAFWSIYKMIIFRNKYGYDNRDLSLIYLFKREMTNRIEINEHLKVQNMKFPA
NLLSYI
>L1-3_SBi_gag#LINE/L1 62-2206 via tfasty with 38346464_Osa_gag, 3 frameshifts and 3 stopcodons. LINE1-3_SBi similar with even more errors. [Sorghum bicolor]
MAWRINKATEEEAQGPVCEAGVCHLHEEHFTNQCPLLRGPKPTVAYCGAAEDGLGFFQIQAQGTGQIVDTVQSSAAALIT
VEAGEVSAQLLQAELARIIPVRWDWEVQGQGANSFVVPFPSTEELERMIAIRTITTKNKEGTIVFEEFVDDVQPIKMLEQ
IWVTVTRVPRVLRSFLPLWAVGSIVGATQKVDMAHLRATGQVRILVAVMDAKKIPKMADVCAGSGIYRLYFKPDEAPQVE
AADPEDDDLLGDGDKDADGGHREMEDAEDPNPNAENNNDGKSDKAPAPPDCPLRSKPPWWIRLWTWLxTAANEISIKVML
EADDGSARKPTPLxRRKNWQLIIILLITLLLLFCSTLIWTTLPAAAVRRRTKLSSSGLGGSTPPPAPQPALPASTSAGLQ
RPRLGRMPRPYAQGRASAHWPPTMGACCCLRPGRRGDVLPPTVTAVGGDLRGTPTRRPPRMGACRCCARAxGEGRAAPHH
ARGQRLGRRRGGVRCCADWARSARLPRRPRWTPSRRGTTAGRLLLQQRLPRPHRPLPDFVPDLHDLAAPSAVPAAPIKEL
RRSTRIAAVADVHTLHKAEGWRQRRTSTFPGNSFTSFPDSKVISNLGRVGINLGPSDVVVIKNIEVDRLVLCANQKKNIP
KSKFSSLHSDAEREDRLEAVLSHACGDLNENMLDTENDQIIDLSPLRRKKKYNNAKNSGKGKLPKKPKTPSKIILK
>L1-3_Cis_pol#LINE/L1  2189-5704 [Ciona savignyi]
MEIEQNLDKNLKIGSINTNGVIRKIKQIIYYMDSNKIDILLIQETHGLNEDHILNFETQYSIKFFLNAPDRNNKFYRQGT
AFIIKKHILSIYEITHDTLFDNRIHRIKITYKHNEIHLYNVYMEAGNCHHNLLNRENMLNNLKNKLNETNVTIDLIMGDF
NMVLDEIDVQRLFDKRKKRDRMALKRLLTEKSFNDAFRLKQKRKIEFTRITTTSATRLDRIYVNNLAKDKVTNFSHVRNY
FSDHNNCPIITLKINSNSKWGNSFYKINNAILDYSDPIENVCALLENWKKQKRKYRNPLLWWDDCKKLITNDLIRYSQXI
NYAEKRRYINKVKELESLEKLTPVEQINEKIIRLKKNVERYESKINEGAIIRSKIKIIPNEEKPTKEFFRYEQTKGNRDT
IHTVYNKHGQITNNPNETMQAIHNFYNDLWTTRGTNIQSLTNYLSIIQPIQIHESEIKEMTKPIHMKEIHEAITDMNDDS
SPGIDGLTTKLYKKLWPYIKYELEELYNNIYLQGTMTKTMKTAIIKLIYKRGDKKDIKNWRPISLLNTDYKIISKIIAQR
LNIILNRIISPNQKCGIPGRTMDDCLYNITACIEAAKHFNRNLTIIAIDFEKAFDRVNYTFIHEILNKLNVPTYIINWIK
IIYNQIISKIEINGAFTDQINITRGIRQGCPCSMLLFLIGIEILTRKIQSNHNIKGFKLNKIELKTEQYADDLSIILSDA
TSINELMKELREFEIVSGQKINTNKTQAISNDPTIHHTINTEISNECIKDTIKILGLHISLKSDCVKENLAKSRRIINHL
YHKHIKRKLTIKGRIMLINSLFVPQLINTGRHIIAPQSFLNDINRTLFKFIWYPFKIDRIARRKLIAPPHDGGLNAPDIK
LKLQALRASRIFEITKLQQIESIXHEWTRFNLGSTMKVINSKLYTNSAPNATQPNFLHAEIRRTVRILEENDFAWESKKI
KPIYIILLKEKSETTNILANNETMKWSRITLNEPPYKRFFTNKERDTNYKIAHNAYNFGDWFRDKIATQYYNGQLQIRNC
KFCGEQTDNIKHILTECQITKLIMNDIEXXTTDCCEKPTKLTKSVILYNHTTENAHPNIFVTKVINIFKTEIIRKKLKLD
IANQYIHNTYQFKQQTLWVINTKIKQIIQQELILRGKEDTYKIFGLKHTYVI
>Jockey-7_DAn_gag#LINE/Jockey 192-1886  [Drosophila ananassae]
MSEFDTHTVLQRQQDDRRLSLQRNNAYHSFVSTQDNATANPTKTTQPRSITPSPSNELNPTSLGRARSCSPALLLDKTSY
PSLMPTCLATVTSTVTSLATATATSTTTTIVSTARAIPSTATTKSAVQANNAAPYTSALSSKQRSAVQTGLDRYIQIKRK
LSPQNSRLGNSAKITRGTSKQSTSEKPIEANRFAILADKSDEIPPEHIVGDNKKPKPPPIYIREKSSNALVSSILNLIGP
DNFHIIPLTKGNIHETKVQTNTEVNYKILSKYLNDNNKNFYTYQLKSSKGQQVVLKGIEPEVTPAEVTGALKEKGFNVKN
VTNILNRERKPQPLFKVELEPETKSKPLKKNEVHPIFTLQFLLHRRITVEEPHKRNGPVQCNNCQEYGHTRTYCTLRPVC
VVCGELHDSHKCPKNKEDPSSKKCGNCGGNHTANYRGCPVYKELKSRTHQRVTTARSHITPMKSTRDVFPPTAVKPSAYN
EFTDKPESFAAALKMGLKSTAPTKPRSSVSPHQPGEQSTNKFEAMICNLQQSMMDFMSFMQTTIQDLVRNQNVLIELLVA
QNQTK
>Jockey-7_CQ_pol#LINE/Jockey 1373-4042  [Culex quinquefasciatus]
MANLNQLKIVNWNGRSVLPKKLEFFDFLSRHHIDIATVSETWLKPKQSFFHPDYRCVRADRENQDDERGGGVLIAIRKDI
HFKILDINTSAIETVGIEILNAAQPVHIIAVYFPGVHRGSTWTTFKRDINTLVRRTVPFFVAGDLNARHRQWNCLRANKA
GNILASRASSSDFFIHAPLTHSYHPKGGRRPSTLDLVLSNNFVDMSSLTVVNDLSSDHLPVRFDVNISVPFNQTXPATRC
YSRANWQVFQRVLNEKIDLTSPLVTNLESPEAIDRCIAMFTSFIIEAESTAVPTAPVRSYKEAEFAESTRRLVQLRNTRR
RQWFRTRDPLLADIVEALNVRIRNECTIARNQHFSNSIRHLENGAKDMWRISKALRNSVKYTPPLKNGDSLVAAPSEKAN
LLADSFANAHRNTLPSEPSVIAQVEESVAHITATDSTTAAAPVVRPKELQRIIQSLKPKKAPGLDKVGNIVLKRLPRKGI
VVLTKIVNACLALSYFPSSWKHAIVRGIPKAGKDVTLPSNYRPISLLPTMSKILERVILSRIESHLESRTVIPRQQFGFK
RGHSTNHQLVRLTQSIQQSFARGQSVGMILLDVEKAYDSVWQDAILHKMKLAGFPQYILKLLHSFLKNRSFQVIVDGELS
RPQLIPFGVPQGAVLSPILYNIFTSDVVMVNGVEYYMFADDTGFASADKHPEIIIEKLQSAQNKLEDYQRRWKIKINPAK
TQAIFFTRRRSERFLPQSQVVSMGHAVPWSEQVKYLGLEFDPKLKFDKHVAASLEKCSKLTRMLYPLVSRRSRLSSRNKI
LLYKLIFRPTLSYGFPAWHGCAQSRRKKLQVRQNKLLKMMLDLPFNFPTAELEDASGVEELDSWTSRLLRNFWTRCSMSE
NDLIVNLVP
>Jockey-7_DEu_pol#LINE/Jockey 1305-3998  [Drosophila eugracilis]
MQISLNLGIWNANGLSNHVNEISLFLKTNSIDIMLVSETHFSSKSFFRVVGYDTIRADHPSDRAHGGAAIIVKKGLKFKI
MDSTRENAMQAATILIKCMHADVSISAIYLPPRFTIKELDFKNFFQGLGTKFIVGGDFNAKHPYWGSRLINPKGSELYKC
IRNNNISTLSTGKPTYWPTDMRKTPDLIDFVVFSGIPQTHMRLMESFDLNSDHSPIIATYSTIAQMLDKPYRVISASTDI
LGFKSYLEEAINVDISLNTGEDIDYAVEFFTTAIHKASYLNTNHSQRNQQSNQLYLSTEIREKIKLKRDLRKRWQETRYP
ADKRLYNRAASELKQLLSNLRNESLAAYLRNLDPNSSNKEYNLWRATKYLKRPCKRNTIIRKNNGTWCRSDDEQAEAFAQ
HLHSVFQPNDISNPTTEAEVENFLGSPCQMSLPIKRIHFDEVVTEIKCLSNKKSPGPDKIDGITLKNLPLNCIRFLTLVF
NAMLRLDHFPSQWKCAEIIMILKPNKTESELSSYRPISLLTIFSKVFEKILLKRMLPILDELSIIPEYQFGFRKGHGTTE
QCHRVTNEIVSALENKKYCTAAFLDVQQAFDRVWHKGLLYKIKKWLPAPYYLLLKSYLSKRCFYVQQRNETSTLILINAG
VPQGSVLGPVLYTLYTADMPVTNNCTIATYADDTSILATSSCRDEASQLLQSELNIIASWFLRWKIKINSLKSVQITFAL
RPGNCPNVTLYGSAIPQDSCVKYLGMHLDRRLTWKPHIKAKCQQLRIKTLKMSWLLNKKSAASLENKILLYKTILKPVWT
YAIQLWGTASNSNIDILQRYQSKTLRKIVDAPFYVSNANIHRDLNIPTIKEEINKYSRKYTDRLHNHTNNLALGLVDNSS
TYRRLKRFHVLDLPDRLI
>Jockey-10_DAn_gag#LINE/Jockey 235-1503  [Drosophila ananassae]
MYDESVACARDTSPVSWQVVSSKRKGRSPSINERRKMARQLRSRSSTISITDSDDFVSEPTRSKAKLSLAGKKVSTQTXS
SNSFAMLATQEIDMDQATSSSNQAPVVPPISKPPPIFIPAVANISDMLKSLTDLVSSDGFIYKAGRDGQVRIMASSEDNY
RSIVRXLTLKNAEFHTYQLKQERAYRAVIRNLHHSTPLDHIKDALRKIGHSVRHITNAKNRITKAPIAMFFIDLEPATNN
KSIFEVKRLCNAIVSIEPPKKFNDLIQCHRCQEFGHTQSYCRKSYRCVKCGSNHKTSDCTKPREDPAKCVHCGDSHTASY
RGCRIYKAAVQMRDQGKPRQTVGNLQARPAPSGMTYTNPYPQTNNETLSYANVAGGHANKPKHASGESDQSLVAQIQSMM
QLMQAQFAQMTQMMSAIIASLCK
>Jockey-8_CQ_gag#LINE/Jockey 44-1387  [Culex quinquefasciatus]
MGKKKPKPPPDDVPGVKKSTQHTFDRRDYGPKLKTNPTLDTEVKKLAAAGHGYSLRRRASYSDLTSTRNRNTWAGASTQP
IPLANGFDTLQSMDDDDFSSISGDSIPGVVDIRVKKTTKARCPPITVRNMSAIEINKLISRLGGGGGNYSIRNFEKAVQI
KVKCADLFQKITAELVQLNAEFFTHAKPEDALVKIVLSGLPVFEVDDLIEELEKNDIFPREVKVLSKSEGGNRALYLLNF
LKGSVKLTQLREVKTIYNVVVWWRFYTRNKTDVMQCFRCQGFGHGSRYCNMTPRCVKCGQKHGSNECQLPTKAELEKAPD
DVRQKIRCANCNLNHTANFKECTARKDYLKHQEKKKPRKASPQAEKASPSSRKFTSNVVAPGLSFANIAAGPGTGSPPGA
APNDDLFSITEFLGLAREMYARLSKCTTREEQFFALHELMVKYIYVH
>Jockey-6_DEu_gag#LINE/Jockey 423-1922  [Drosophila eugracilis]
MDKDQQKSIDFDLMRKFAGASSADLRNSLRASLLDSSVNAGSTTGWAPTSCITTCTVTSPTSSSLTFTTSVNGSLCSAAS
STMQAPAPTNPSTQGWQEVTVNHKKGATKKRAGSNLSPKVTPKKIVSNANRFLALSDEDELDAEPSTSLAARNRATKLRD
ATQQSETANGAGQAQTVAPQXSRSPKVPRIMVPGVVSYSAFCSELDALIGETYTIKALNSGDCAVQCNSSDAYRLVAKHF
REKGIVFHHHQLPEDRPFRMVMRNIHHDVPSEDIIECLQEQGHCVIRIYTPRSKATQLPLNMRFVDIKKADNNKLLKNLT
AVCRHKVTWEKPRKQSGPVQCNRCQEYGHTKAYCTRHHICRECGENHPTXECKLGKDDPRCCFHCGNSHAANFKGCRKYL
QVAFKHSPQSKVSEATVTNSILPTHASPNSGAKTYAGVAKRSQSNTHNPPPTQSNANASLDAKLEQLFTRLDRMMSLVET
LMQAILQTRSSSSALHNGCA
>Jockey-4_DEl_gag#LINE/Jockey 323-1987  [Drosophila elegans]
MEKSSAQSRPRNGCDKFEEMRKVAGADPEVIRSQLRAKSADLSAFLASMPTQSTITKSMVTISSNTTTSVTCTITNVQAS
VVCTPTYTEAAIVASSMYPTMSTDSNLTKCLFQAQDRNVHRKRKGVTQSPLSILTPPPNRKTKRQITVPPNEAASTSTAA
RLGDNRYEILADEAETMDQDLSDADSDNDDPTAPHVVGQPAKSNKPPAICVPSVSDPLSLEQALNQSIGSSNYNIRTSRF
GVSRIYTTNSDAFRAAVKTLTTLNCQFWHHQLKEDKPYRVVLKGIHANVPKSQIEQSFSDHGFEVLNIYCPKKTDWKNIQ
VNEEDNENTINYKTRQNLFYINLKQCPNVAEALKITQLGRYRVTVERASRRKDLLQCQRCQIFGHSKNYCLQAPICGKCS
GPHMTGSAHCTSDIYLCVNCGGDHASTDKVCPVRAEKYKKLKPRPRLPMTYSPVTNNPTQRSSRGYISGEALRTNISYAD
IVRPNIVQTRTNKSLQSDACSPSDSSLNNKFAALESSIRAINSRMDQLFKLIQETVEANKAFRELVQVLISRMPK
>Jockey-3_DT_gag#LINE/Jockey 196-1896  [Drosophila takahashii]
MIKNVDQRTQRQKQQDEAREKIQREQDKRRLSLARNNAYFSFTNNTLEPKVQENASLLTAENQRASSCSPALLLNAQTPW
SEQCKTPTELQPPGATTTATTTSTTTASVANIAITTPLSSSAAGKATTLLSAKIGSNGKNKATVEEMTNPQAGSAMQTGM
DRYINISKRKLTPSKNADGNKPKVNRTSKGPENLGPLNENRFSILAEHETESEQLAPRKLKPPPIFIREKTSNALVNKIV
ELVGKDSFHVIPLMKGNISETKLQTRTEDDFRAVSKYLNDAKKNYYTYQLKSCKGLQVVLKGIEPDVTPYEITEALKENG
FCAKNVINIMNKNKKPQPLFKVELEPDSRTLKKNTVHPIYKLQYLLHRRITVEEPHKRNGPVQCTNCQEYGHTRGYCTLR
SVCVACGNIHDSEPCPANKEDSLTKKCVNCQGNHTANYRGCPVYKEMKSRMQRTTTARYQNTQNNYMRSQTTPEVFFAKA
ARSSFGPSITTNGISYASALKSGTAHIEPKMDNIPQAMGHPQSDMETMMITLQHNMMEFMSFMKTTMQTLVQTQNILLKI
LAAQQSK
>Jockey-4_DVi_pol#LINE/Jockey 2389-5106  [Drosophila virilis]
MATQLRLGSWNARGILQNANELKLFLKKHDVDIMLISETHLHTNLYLTMEGYVCYRADHPTGRARGGAVVLAKQDLAHYH
LHTVTSSDTQLAAIMVETPLGEILVAAAYLPPNIPWNRAEFDSLFGQLGPKFIVGGDFNAKHRLWGNYRADSRGTALHEA
LTPCSAQVLATGRPTHFPYNRQSTPSCIDFFIFKGIPNSVLSVREEYDLSSDHLPLLTTINTAAQRIPKKRRLVLPGSNI
QRFKAELNSLINLNTQILSVEDVDAAVQTLLDQVHAAAANAAPAHIYSAPTSQRPRTFSPILEGLLALKKRLRREYVRTQ
DPTIDRIYRRIANRVRKELIISKRNATDTMLEEATADESSKFALWKLSSRYKRQAAPKFPVRLPDDTWARSPMDRAEAFA
CNLEERFKPFETASHARIQRVAQILEAPLQMSLPVSPITFQEVEQEMKRLKSSKAPGEDRLDNQTIKLLPYKAVLFLVAI
FNAALRLGYFPVAWKKAHIIMLHKSGKPPNQLGSYRPISLLPAFGKILERCILRRVLDTPEIKRLIPKFQFGFRLKHGTP
EQLHRVTNYILDGFHRKEYVVAAYLDIQEAFDRVWHAGLLSKIKDKLNPQLFSTIASFLTERTFQVVQDGVASQTKRIKA
GVPQGSVLGPTLYSLFTHDMPTANASRRNDRQDLLVATFADDTAILAKNKCVYVATDLLQEYLKRFENWACRWNIAVNPG
KCATVTHTLRKDSCPGLFLHGELLEQYRQHKYLGVTLDRRLTFSKHVSAVTSNIKSKIRRMSWLLNSKNKLSLRNKVLIY
KVILAPVWRYGLQVYGIAAKTHLNKIRIIQAKTLRKITGAEWYIRTRDIAKDLKVPMVGDIVNRQAASYSTKLHNHPNIL
ARSLLRRRRRRRLKRTYPTDLIDRYV
>Jockey-5_DYa_pol#LINE/Jockey 77-2794  [Drosophila yakuba]
MIVSNLKIGLWNARGLVQKNEELRLFLTDHSIDIMLITETHMRPGLKVYTPGYEQYYANHPSNNAKDGSAIFIKANIRHS
QNKSTMRTDVQVASLDVPTSGGIIKIASLYLPPNKPWTKNDFDQLLITLGPKCIAGGDYNAKHQWWGNLRACSRGKRLQE
AIVSSSSEVLATGEPTFYSSNTRLTPTALDFFVVNGVPINKLSIETKYDLSSDHLPLVATLSHTPQYKSRKKSLLAPGSS
VETFRNVLDRSINLNIDINYPEDIEDAIVTFMDTINVAAALATPGSRNSPTQSRRSILPQNASVLIQLKRRARREFSRTG
DARAHNIYKRLSNRLNKVLVKNKQDHFDQMLENASPDASTNYSLWKLTNNLKRQVIPKAPIRNPAGGWCGSSQEKADIFA
SSLEDRFKPLNLTPAEHRNRVQTLLDQPFQMALPTNPVTLEEVVTQIKMLKPKKSPGEDLLDNRTLKLLPIKAVLFVVLL
FNSALRLGHFPNKWKSAIITMIPKPGKQPTEVDAYRPISLLPALGKMLERVILERILKLPSVSQAIPKWQFGFRKSHGTP
EQLHRVTNFALEAMEDKMYTTAVFMDIQQAFDRVWHDGLLSKLKTLLTPQLFLIIKSFLSNRQFSVVVDGDKSSTRTISA
GVPQGSVLGPTLYSLYTSDMPDSWCCTEVEDENILIATYADDTAVMVRSTSMSDATRGLQEYVTAFEGWATKWNIGINCS
KCACVTFTKRPLNCSGISMLGSTLRHETFYKYLGVILDRGLTFQRHTTMIKKAVLSKAAKMSWLFSPRNKLSLANKVRLY
KSILTPIWKYALQVYGITARTNLNKIRVAQSKVVRSLCNSPWYMRTRDIERDLNIPKIGDVLRTHAERYMWRLGSHPNTL
ARRLIHPPRKRRLKRFHPHDLPSRLL
>Jockey-5_CQ_gag#LINE/Jockey 339-1529  [Culex quinquefasciatus]
MDTEGSTSEGGDGSTKVIEVNIPTSNQFDGLEDEQGDDPISLPPNPTPPPVLRIGEPAKGKKVRVPPISVVGKSTRQLRE
FLGQSRIQQTAFNMKATKTGVQLICSGEDTFRSALAALRGANIQYHTYTPAAEQPMKVVLSGLPVYDEAELETELAVLGV
HVQELKLFSRKVAGLEESALYLLHFAKGTVKLSDLQKVKAVFNIVVRWRYYERKPTDAVQCHRCQRFGHGMRNCNLAALC
VKCGEKHLSAECRLPNKADLARVDKNVTREAIKCANCSGQHTANYRGCPTRKNYLAKLAEKKAQLRNAKPPILTPPRNTV
PQNGSTGNDSPVGTSTMTFAEALSQGSSNNTNSDLFTMSEFLALAREVFARLKSCKSRLDQLEALVELTAKYIYSV
>Jockey-10_DAn_pol#LINE/Jockey 1497-4217  [Drosophila ananassae]
MQIGIKLVLWNANGLCKSRPEVEMYIKRNNIDILLVSETHFTDRSYFKIKGYNTIHANHPSGNARGGAAVVIKSNIKYSE
RAPILEHWFQAAVLSIDTPTGSLILAAAYAPPRHKITTDMFTQIFTQMGRRFIIGGDFNAKNTWWGSRLCNPKGNALLSC
IHSMHLTPLSSGSPTYWPTDPNKVPDVLDFAVTCGVNRNLIHIENDFDLLSDHCAVLLKLNLPIMNQKRTTRLIRNSSNV
ELFKTTLEERLNPNIVLNSGEDIEEAVETLTRSIHDAANLCTAPNPTSTVHPQRQRGDRHLHSAEITEQLRIKRRLRRVW
QLSRNPLDKTAFNRASKDLNTLIYELRNEALAEYLRHAEPNSLEHNLWNNTKYLKRPTKRIPAIISSTGSWCRSNEEKAE
TFALHLQRTFTSFNLCSATDATNTQTFIESPCQMDLPIRTIHEDEVKCIVSSLKAAKSPGYDAIDATTIKCLPPRAIAFL
TVIYNGIIRLHHFPSQWKCAEIIMIPKPGKPEQDPASYRPISLLAILSKVFERIFLARLLPVLEDGNLIPEHQFGFRSQH
GTPEQCHRVSQTILNSFEDRKYCSAAFLDVKQAFDRVWHLGLLYKLKSMLPAPFFLLLKSYLHRRLFFVRCEWAESEIFE
VKAGVPQGSVLGPILYTLFTADIPVLVRDDLVVATYADDTACLATSTDHVEASAILQQQLSKLEPWLLRWNIVVNESKSA
HITFATRPKCCPEVRLNGTTLPVVNKVKYLGLTLDRRLTWAEHIKNKKKQLSLKLRQMKWLLGYRSQLSLRNKVLLYKVI
LKPIWTYGIQLWGTASTSNIDVLQRFQSITLRRLAKAPYYVRNQVIHKDLEVPSVTEEVKRYALKYQERLDRHCNPLAVN
LLDNSQHRRRLKRHHPLDLPFRPPKEW
>Vingi-10_AMi_pol#LINE/Jockey 21-2273 via tfasty with Vingi-11_AMi_pol, 7 frameshifts and 2 stopcodons. [Crocodylidae]
TETCPIPRWNFKKAQWPDFLSKTEKLAAKLPDPTNEEDFSAYEAFVTSLTKIASNYLxTITTSDNSSIIAEAMERLQDHI
NTMKRERCWMETVENIDFTHSSRKAWNTIKRLTGEGKPKQQCPVKADSVAAQLIQNSGFTNPDKNFSKEIRHQTTAMKRQ
PAVDLHLTGSFTELEMKTAIASIKPHKAAGLDNIYPEFLMNMGPCLRDWLYLSSCMxRNKIPKFWRCAHVIALPKPGKNA
DNPASYQDQISLLSVVYKLLERLILNRDELTFIDPQLPPEQAGFRKNRCTTDQVVRLTQDIEDAFQRREKAGTVLVDLTA
AYDTVWLKGLEYKLLKMIPDRRMVAFITNIISNRSFILSTGGGDRSRYKHLRNGVPQGSVLAPTLFNIYISDIPPTTAKK
YAYADDLALSTFDKSVPKIETALSQDMNTVASYLHQWRLKLSQTKTTASLFHLCNAMAHKRIKIDLNGNELPFTDNPVYL
GVTLDRSLTYREHLLKTSKKVNSRIGAIRRLAGTTWGASFTTLRTSTLALVYAPAEYCCQAWGRSSHASKVDVALNSAMR
IVTGCVTYTPVDMLPILSGTLPPQLRRRKATLGLAQRAQQNQEHLLHEVLEQPVHKRLKSRNSFRREAWVLLQQCGGGSS
ALWALEHTTEKWDETDSRLKRFISNPQHSYPPGYELPRNLWIKLNRIRSGAGRFNATLYKIGLKDSPIRECGDAPQTADH
LLTCAAHPRTQDEDLASINDKAVVWLCHINDA
>Vingi-1_Tcas_pol#LINE/Jockey 50-3112 [Tribolium castaneum]
MGGFSPPRNYRHLDDRSRSTRSSRSSSGFLGLRSSSEILELPQNLTVCQLNIEGISKDKCDFLSKMALRERIDVIVLQET
HTSSEMDLFSRGQIPGYTLVDFINSASYGCATYVKSNFEDYQSIAKTQENNIFLLTVKIAGIFIINVYKPPNDQWPENLV
LNYHPAIYIGDFNGHHNLWGYAENYRNGLALVSWMELNKLHLVFDGKTRKSFYSARLKKEYDPDLCFVTINNEVPLQASR
DVLSGFPHSQHRPVIIKIGNEIKQFPSLQKPRWNFQKAKWNEFAKQVDSDLRWIPPTSINYHRFVGAIKNAAKKFIPRGF
RKNYVPCWSDETKSFYNAYVSNPNPENADAVLNSFNKARKEKWNNLMEDLNFTHSSRSSWKLLQKLGSSNIAQPKTDSAI
SPNAVASRLVNVSNSVKLEKRAKKEMKRRVQKQRKKMKVSEELSRCFNVDELKAAISSTKSKKSAGFDGIYPEFIKNLGS
FALKWLTFLFNDIFISARLPSEFKKTKVIAILKKGKPPQEASSYRPISLLSVCYKILEKMIYQRISPLIEDILPSEQAGF
RPQRSCCDQVLALTTHIESGFEKRLKTGVVLLDLTAAYDTVWKDGLIHKLYKVVPCKRIVSLIESMLTNRKFRVFVGEKS
SKVKTLNNGLPQGAVLSPLLFNVYTSDLPETFSRKFVYADDIALTFQHKEFHRLEEQLSQDASVLCDYFKQWRLCVNPSK
TEVSCFHLSNSQKERKLNVSLNGIPLKHNFHPVYLGVSLDCSLTYKFHLEKLRQKLKTRNNILLKLAGSTWGANAKTLRV
TALALVFSTAEYCSAVWMNSSHTSKIDAQLNTAMRVITGTLKSTPTEWLPVLSNIAPPALRRKLAVKKLWNKYRRHPQEY
PIWSDLIAPENRLKSRKPFWVETFNIENFFIINEWRNIWSNIQLFNKDLIEDPSKRVPGMDQPRWVWVKLNRLRTGHARC
KSMLFKWKATENPYCQCGQVEETIQHLVEECQITSFQGGFNEIHQLSPQAKTWLSTIKVL
>3738337_Ath_pol#LINE/L1 gi|3738337|gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase  [Arabidopsis thaliana]
MDLVSSLPDELLYQILSFLNTKEAALTSILSKRWRYLIAFVSCIEIDDSANKPKRKGNRQRFMDFVDRVLALQGDSPNKK
FSLKCQTDVGDRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPADYEGMCVEELENLLPF
RCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPK
KKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKID
ISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLD
KAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSR
YSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEI
NRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSI
GTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLINLTGARGAIDMGISRHMTLAEAWSRRRRKRH
RVEILNEFEEILLQKYQHRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIR
NRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVYKDRFSTKWSAVVNYISDSQPDRIQSFLS
RYTFQVSIHSIWRERNSRRHGEKSRSASNLIRQIDKTIRNQLSTIKKKGDLRLEKGLQTLILDSIRFDSGQFQSLLSACP
VLEALDLANVRCLYRNHEIETVSSASLKNVTMKCSRVYLFDTPNLVCLNYTAFVHDNFPLVNLEYLVDAQIKLLSIRKNH
VFPNLGNVRKLMHTVTNVKKLYLSPRTLGIVLGLCSHAMPVFNNLTYLAIETSVDTAWQAMPVLLKTCSHLETLVIKGGL
LHCVTFDCGDACNCISREEKCRSLASFPVKRLEIREFQGQLREKNMIKHFLYYLPCLKEMDIYVKDDLPQLSSDSNLFND
LSGRPNVKIKVHGSLT
>9758853_Ath_pol#LINE/L1 gi|9758853|dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein  [Arabidopsis thaliana]
MSGFFWNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNRRGRIWVLWRKNVRLS
PIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELKDHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPM
VTPGMRDFQQVINYCSLTDMAAQGPLFTWCNKREHGLIMKKLDRVLINDCWNQTFSQSYSVFEAGGCSDHLRCRISLNSE
AGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKIRSMARDRLGNLSKKANEAYKIL
CAKQHVNLTNPSSMAMEEENAAYSRWDRVAILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVK
TKGDEIKAEAERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEF
FKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAG
NQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSV
QVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIER
IIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSW
TSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLK
EANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDN
WSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYNVIEDALKKSWDTRTETEDKVLWRGKSDVFRTTFST
RDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSV
IWVDLARGIFKTQYTSHWQSIIEAITNSQHHRVEWFLRRYVFQATIYIVWRERNGRRHGEPPNTASQLVGWIDKQIRNQL
SSICLKGDKRYDGSLQVWFQSRS
>4581111_Ath_pol#LINE/L1 gi|4581111|gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase  [Arabidopsis thaliana]
MNSDQFLLKVFRWLGYDYFHTIEPVGKSGGLAIFWKNHLEIDFLFEDKNLLDLKVSQGKKSWFVSCVYGNPVLHLRYLLL
DKLSSIGVQRNSAWCMIGDFNDILSNDGKLGGPSRLISSFQPFKNMLLNCDMHQMGSSGNSFTWGGTRNDQWIQCKLDRC
FGNSEWFTMFSNSHQWFLEKLGSHHRPVLVNFVNDQEVFRGQFCYDKRFAEDPQCAASTLSSWIGNGISDVSSSMLRMVK
CRKAISGWKKNSDFNAQNRILRLRSELDEEKSKQYPCWSRISVIQTQLGVAFREEESFWRLKSKDKWLFGGDRNSKFFQA
MVKANRTKNSLRFLVDENGNEHTLNREKGNIASVYFENLFMSSYPANSQSALDGFKTRVSEEMNQELTQAVTELEIHSAV
FSINVESAPEKLECCQGSDYIEILGFFETGVLPQEWNHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKH
LPSIVSPSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKWISWIMG
CVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLV
CRATKSDCEQMMLCLSQYGHISGQLINVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYI
KEKLQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGGKKLTLPK
SLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPSYTWRSILYGRELLNGGLKRLIGN
GEQTNVWIDKWLFDGHSRRPMNLHSLMNIHMKVSHLIDPLTRNWNLKKLTELFHEKDVQLIMHQRPLISSEDSYCWAGTN
NGLYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGCLFCK
EEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTG
LTSSEIVAKAYEECNLWINAQEKSSGGVSPSEHKWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVLLHSRRSYS
QVYSLFDAKIKSWDWALESMDHFHFDKVTFAATSHDIIKALHKPNEWPMLIGHIAEFLSFTKDISDWFMMMESTQCNNGA
AEIAKSVITGMRWQSYVACSFPHWLRSLFEEERIHQQNV
>Vingi-1_Pp_pol#LINE/Jockey 1-2871 [Phlebotomus papatasi]
MTKEDILCEFCVNFECDVICLQETHRGPTQGRPKINGMKLVIERPHDKYGSAIFVKSDVDVKSVALTDCDDVEILTVNFE
KFSVTSVYKPPGTCFQFEEPNNFGNSNAHFVLGDFNCHNILWGYGKNNDDGDALEEWSESKGLTLIHDAKLPASFNSARW
QRGYNPDLIFVDEKIAPSCCKNVLPPIPHTQHRPIMCQLFAAIKPREVPFRRRFNFSKANWNRFASDVDLSLGDIEPTSE
NYDRFVEAVKKVSRRHIPRGCRTQYIPGLSSEISSIMSEYSKSFEADPFSDATLELANVLTDAVAESRRERWVSIVESMD
LSKNSHRAWRLIRHLNNDPTSVKTLPQVTANQIAHTLLMNGKVGSRSAKPKFIRDPTTEVQHLSAPFRVDELVLAVKSMK
NKKAAGYDGLYSEQVKSFGPRTIDWLLKLFNYCLSHRKIPKAWRKAHVVAIPKPGKDINDPKSYRPVSLLCHLFKVFERM
LLNRILTVVEEKLISEQAGYRPGKSSSNQVLNLTQFIEDGFEEGKITGVAFVDLSAAFDTVNHRVLLTKFYKLTSDYGLT
QMIGTLLQNRRFFVEFRGQKSRWRLQKNGLPQGSVLAPMLFNIYTNDQPLPSPSKAFLYADDLALAVKASTFENVEAHLQ
TSLIELSKFYRENQLRPNPSKTEVCCFHLRNRWAKRRLNVEWEGRTLNHNFTPKYLGVTLDRSLTYKTHCNNIKDKVKTR
NNLLRKLVNTQWGAQPKVLRTSALALSFSAAEYAAEVWERSAHAKKVDIALNDTARIVTGCLKSTPVNKLYPLAGIAPPQ
VRRQVISRKEMSKASTEPRHLLYGQVRVRQRLKSRKSFSQTVTCLEATPEEAKLSLWKNTFPPDFVEPKENLPPGGDQDW
KTWRALNRLRSGVARSRDNRRRWGFLEGDVLCDCGVVQTTPHLYVCPLAPASCETGDLMTANSAAIDVARFWARHV
>Jockey-N8_CQ_gag#LINE/Jockey 112-1554  [Culex quinquefasciatus]
MPRAGRGRGSSSAASKNPRSSSTGRVQKGKHTNAASTAIAHGSVPGDVTDPSFLHVSYRPRESPVRTRQSTRASGSTSDQ
QQQQQSTSTTTTTTSNVPTSNEFEMLSGEENNTASDSSSAGDDDDDDELARKQGKQKKCNSPKERRPPPIFVLDTLADDV
DELLEGLQYCLKISKTSVQVITHKKQNFDLVVKKLKLRNFKFFTFDPAEKVPVKIVLQGYPDRPISDLEEHLSGVKVKPR
EVKVLSKSTTVTGTYTLYLLYFDRGSVKIQDLRQIKALDGFFVTWRFYTKNPTDAAQCHRCQKFGHGSRNCNLPPRCVKC
GETHFTERCNLPRKDQLGENAQQHKARVKCANCGGNHTANFRGCAARKKYLEEQDKKKKAPASRQPPKTSSTNAAAAGGG
AVPSTNPAFPPGWGGSYARVAASGSGTSPGQADVTGDDLFTLPEFFALAGEMLTRFRACRNKAEQFQALSELMMKYIYNG
>Jockey-11_DAn_gag#LINE/Jockey 205-1530  [Drosophila ananassae]
MPSRQIKPTACAHSFKEIRAAPLPAVPNINNNNMNESKLSVPETERRRSSNAYFSFVANEERARSCSPALPGTSSALTWS
AQCTSPALSPSGLSTPLYLPTTSTTTSITTSCTSTTTATSVAVSQPPRATIQTGIDRYIQVKRKLSPQPKKNANAAKAMK
VNNQDEPINSLSENRFSILSEDSNNEENTEVPKAKQKPPPIYIRDQNCSDMVNCLAKLIGNNNFHIMPLTKGNIRETKLQ
VYTEENHRLATKYLYDNQKKYYTYQLKSSKGLQVVIKGIESSVPTKEIIEALSSAGFKVKGAINIINRQKVPQPMFKVEL
QPETKTTPKNMIHPIYKLQYLLHRRITVEEPHKRNQPLQCSNCQEYGHSKSYCTLRAVCVACGGLHNTAFCTINKTDHNS
KKCGNCGGNHTANYRGCPVYKELKYRMNTKKTLTTTFVCHSH
>Outcast-1_DT_gag#LINE/Jockey 237-1775 55.7% sim to Outcast-1_DAn_gag, SW:263, [Drosophila takahashii]
MADAENSAAGHLNISSASKNISRSDDSKKRKLVLNNLDDQHVLKLANLSSNKESTSSMDSENSFFDVMDEGAKGVSFPAN
EPVNLKSQATSSNNNAVSNNGSSDRTENLYDVLHVGVASVLLDTKECKSTENIIAKNGLYLFGKIKDVGLKNICNIVVLG
AKLYKVVFKEWRDANACVLNKKLADMKISAFIPKNFTETSGVIRNVPVDLSDKELEANIDSLIEVKSVERICRKVKSTNT
DGENTFKLEPTESVKINFLGTEIPESISVFGVINLKVTHFIPNVRQCFKCGRLNHTTSRCKAKDRCRSCGAQDCKNTCKV
KKCILCNSPDHHSWSRYECPVWAKEMHLMKLMTIRKLSRKEVLEKYSLPSEFQVFNKYDQDFPSLTQTSIPVTVNRDEVV
NKSLKKHSYVTRLVQRPTAPIMKPNFPPLESYEHVKSDWKFKYPDREEISEKDSTFLLIKDLIQLILPLAEGKSEILESV
MKIQNKIEFLKQDKRKLTRNKSDMTTVNHLNAY
>TART_B1_pol#LINE/Jockey 4110-7385 [Drosophila fruit fly genus]
HQKVTFPMTRADNRDILKIAFWNAGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPVSSKRGG
VATIVNSSIRHMALKPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLRWLPHHFTDVLNFAEKTLGGQTKFILCGD
WNAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRFEKRISSGADLSSDHLPI
LLEINLDTNTLFLQKQNNNILKKNTNIELFKKVLERKILLNTEIRVAEDINDAISTFMKNIKDSAAESTPSPRIRDNPRR
RHRQANRNSHTLALDENTSRLLEEKRILSRVFKATKNYEDKAKLKAAENRLKKAIKILRENRINEQVEGIDTSNPDRMRK
MWKLLDEGKRTNQPNFPLKLETQKGPKWTKTIKETTETFVSHLEGRFKPNNNVPDYHIDRVNTGLRIIKESMLTERHNLN
KNPHNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKMILKPGKSAN
EPRSYRPISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEA
FDRVWHEGLLLKLAKILPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPS
PTERIMLSTYADDTIVLSSDTLATAATRNNENYLKSFSDWADKWGISVNAAKTGHVIFTLKNDLPTSLRTMKIKGQVIKI
ESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILKSVLSPIWQYAIAAWGPLVTDAQIRR
IQVEENRKMRDICRAGRYTSNQTIRDRYGIKTVEEFYQQALHRFSETIKSHPNIAVRRIFTRHYIPNRLERSRQRYLKMT
NEHITQKQTGQTLSPKLLKIPDLNDCRTLKKRNERDKIRQTHLIELPTLLRLEEEEEELRRIKKQEERERREKETQKWPP
DRWCELEINLYNKQYRRGDLTRQEIIQKFRGQPLNVQRIILPDYKGDQEHN
>Outcast-1_DWi_gag#LINE/Jockey 92-1615 74.8% sim to Outcast-1_DAn_gag, SW:1150, [Drosophila willistoni]
MGKITRKITGSKARGGSPFSELNGSKKPRISRTSKERKITTNESQSESEYNEVEMTEMPKSNDSAPKENKDPTEMSNGKS
QNNVLYYNNTHKGPFVVYVDRVDGNNKESNKSRLPINPLELNAVLFKLKVKDIITVNKIGYGRCKVEFKSAAAANIFIAS
DLKKYDYEPKLLKHFLYKTGIIFQIPTRFSDEELKEYISTPMDIHEIIRVRRKEKDNLIATSRVKIVFKGSQIPTEITFL
YSKVPVSPFVPFNQCYRCFRFNHFAQHCKQLDQKCNKCSLSHDKEKTCTQTICINCKENHPATSIDCPARKRAFAIQKCM
TMENLSRNEVKIRYPALFQRQNTIDTNDTTQFPIPTWQKTSTTPTLQNNTKLSTEQLHAHIPYNKTLRNMQNRRNEERNS
SETMSTWKATLNEHKITLNEKYVNTHTNNTFKPTPPTITSQSNQSTDSPSALEMAKEGLSQLAIDISSFITNPNIQLNSV
HYKFLETLRDRIAQTNTKIDIIKINQLN
>CR1-14_NV_pol#LINE/L2 1179-4019 [Nematostella vectensis]
ELFSSALNTRSLSGNFDEVTNLISAIKLNFSIIGISETWLKDSNHFCDIPGYNYVHEHRMDRIGGGVGLYLKQDFDFKLR
PDLCFSSQSAESLFVEIMRKDEKNLIVGVIYRPPDLNAREFCDELDQLLQNISRNNKICALLGDYNFDVMKHHCHRTTAE
FLDIMYSKMFFPLITRPTRITSHTATLLDNIFINDLNSYCDSGLLFSDISDHLPVFSILSDKLDCSAKNTWITYREKSAS
NMERFRTELQQCIWVNISLTNDPCYAYGIFLDKFTSLYNKCFPVKKTRTKKGVRKKPWLTKGLFKSIRKKNVLYKRYLCM
PTPSRERHYKSFRNKLNHLLRIAKRDYYERKLNDYKSNVKYTWRILNEVIKNRKSKTNSLPSTFKVADSEISDPVKIAND
FCDYFTSLGPTLSAKIPSSTKPFASFLQNEVVNSVFFESTDDQEVIKICESLRPGTAAGYDNIHMDVVKNIIDLISKPIA
NIINLSISSGVVPKELKIARVIPLFKSGDQALYVNYRPVSVLPIFSKFLEKIMYDRLYKFLIKYNLLFDNQYGFRKHHST
ALALIHLYDKLSSAIDNKEFTMGVFIDLSKAFDTVNHEILLTKLQYYGVRGTSLKWFESYLSERMQFVNFNGHCSSRKVV
KCGVPQSSVLGPLLFLIYINDLCTVSSALDLLLFADDTSIFFSHSYLAALSEIVNNELEKMADWFSANKLSINIKKSNYM
IFRPRQKRQTLEVDVCIGHHYLSQVEETVFLGVVLDEHLTWIPHISNVTRKVSKAVGIMYKASFCLPKRSLMTLYYSLIY
PYLQYCICVWGSTYPSNLNRLFLLQKRAVRIISNKPYDAHTEPIFKDLNILKFHCIYLFHIGKLMFQFKTKILPRYFDNI
FFLNSQIHNYNTRRAKLFHIPKCRTNIRKFALRYQGPAFYNSLDTDTQSATTLASFLTSLKTVLLN
>RTE-9_BF_pol#LINE/RTE-BovB 174-3284  [Branchiostoma floridae]
MDPQHVSYAARWQPHQLTTPASGPLPVMAELNHVTTPTGSIRTDLSRNRPLRATDKRVLNFRNKVRVATWNVQTLLRTGY
ATLLSHELTKYDLSLAGICEVRWPGSGETIVGDHTFIWSGPEDRTGLYGVALAIPSRLRGSLISWKPISDRLLTARLLHT
HGKMTVIVAYAPTEVAEDTDKDAFYDQLQEAVQDAPPHDITLVLTDANATLSANTHPSAQQDAMGPISVDTTTNDNGNRL
LELCRATNLCIADTWFPRKRIHHWTWYSPDGRTRKAIDHILISGRWKSFITNCRVYRGAQLGNTDHRLLMAHMRLKLKAD
PSSKKQVRVDSARLKDPLIQEAFSCAISNRYNALAMDATTDWQLFKEEVLKATEETVGKSRPSPKQPWISPETLDIIDSR
RAARLRGDLTEYRRLNGIRNIAIRQDREKYWTDQAAKLEAAAERNDQRQVYRLLRQAKAGPRQRSFLIKDSVGNIISTES
DCIHRWKEHFSQLLNHPPVPEDPTLSEAASATDATNADCPVTPVTPDEVKAALGKLKNGKAPGICNITAEMLKAGGDHMI
QWLTQIVNHVWVLETLPDDWRRGIILPFWKRKGDQLVCSNHRGITLLSIPGKLFTRILLTRAIPAIRSRRRLQQAGFMPN
RSTIDHISALRLAIEKAREFRKDRHLYIAFIDLRAAFDTVDHASLWKILRLLGAPQKTISLFQQLYNSAESCVRVNGKES
EWFSINSGVRQGCVAAPDLFNCIIDYLMSRVCERVPGVSFGQYNLADIEYADDTSLLADDLTRLQDALTVYDEEAKKLGL
SINWGKTELMHVGDGPDPEPFIFSGCPVKFVSTFKYLGSIISKTGDLKPEINQRRAQASAVLQSLWKPLWRHRHVSLQTK
QRVYNSSVVSVLLYGSETWPLSNTLAARLDGFDSRALRRITCTRWQEHVRNSDLREQTGQPPASSLAAMRRVRWYGHVLR
LPPEHPTRALLDFDPKQAGWRRPRGAPRTRWMDVVTRDLRSINITPQQAQPAALNRGRWRTLVHAVGSTHHVQEDE
>RTE-5_BF_pol#LINE/RTE-BovB 2-1540 fragment [Branchiostoma floridae]
NLASEVEEAIRTLKPGKSPGVDNIPGELIKHGGPTMVKVLSALCQKIWEKKEWPKEWTQSLIIPLPKKGNLRACQNYRTI
SLISHLSKVMLRVILNRLKPKVEEILTEEQAGFRAKRSTTEQIFNIRLLVEKHIDHQREIRHNFIDFKKAFDRVWHEGLW
KVMRDYNIDESLVAIIKSLYDNATSAVLHNNQLGEFFRTTVGVRQGCLLSPALFNVFLENIMQEALSGFESSISIGGRQL
SNLRFADDIDLMAGSEDEHQELSTRVENSSAAYGMEVSTSKSKGMINSTLSDARTSVTMAGEVLEDVDFFKYLGSILNRD
GTSTQEIKVRIAQASAALAKLSPILQNKNISLPVKIQLYRTLIVSIFLYGCESWTTTAETERRIEAFEMKCLRKILGISY
LQRQTNRSVRHQAEAACGKQESLLSTVKRRKLNWFGHICRHNSLAKTILQGTIAGGRKRGRPRKTWLDNIKTWTGLSTEQ
LIRGAEDREKWARITTTGCRGAPTTTEVTGRE
>RTE-11_AMi_pol#LINE/RTE-BovB 458-3613[Crocodylidae]
MIKRLACWNVRTLTPGFDSDSDLRKTALLNYELVRLGIDIAALSETRLSDTGSIQENDYTVFWHGKPAGERREQGVGFAI
RNSLLSFCESPIAVSIRLVTLRVHTQNGFIMLFSVYAPTLQASDEDKNVFYQQLEEEIEKTHRNETIIILGDFNARVGCS
FKNWPGILGKHGIGNMNENGQRALELCASQNLCVTNTYFAGKITRKTSWKHPRSGHWHQLDLVLTRRNHLKEILHTRSYH
SADCDTDHALVCCKVRINVKKIHRSKTTSRPQIDISQTKDIEKCRLFNEEVVKASLPNNSATEAWESLKTNMYNAAVTAF
GKKCKKNADWFEEHSETLLPLVENKRTALTNYKKSPNTITLENLRKARREMQKEAKRCAQDFWLKLCDDIQKAADAGDSR
GMYEGIKRAIGPVKKKTAPLKDLNGNVITDKQKQLERWIEHYGIXYSSETEIKHEELEGLPQFEVMMDLDNEPTLEDLQK
AIKSIPGNKASGNDCLPAEIYKCANDELLRKLHEVILLCWKEEAVPQDFKDARFVQLYKNKGDRSDCDNYRGISLLNIVG
KIVTRIMLPRLQSLGERIYPESQCGFRSGRSTIDMIFSVKQLQEKCREKRIPLYIAFIDLTKAFDTVNRQGLFTVLKKLG
CPPKLLNIIRSLHQGMKATVVYENKESNAFDINNGVKQGCVLAPVLFNIYFSFLLLHAFKDSNDGIYLRTRLDGGLFNIA
RFRAKTKVKELVLRDFLFADDAALVAHSESSLQNLLGRFSESCKSFGMAISLKKTVIMYQGVEEPIPDITLEDKSLGVVD
SFCYLGSTISRNLDLQTELTNRIGKAAKNFGLLQKRAWNNSKLSAKVKMRIYETCVLSSLLYGSETWTTYARHIKRLNSF
HMRCLRKILKIKWEDRIPNTEVLERAGLTHLETTIKKRRLRWIGHVRRMGGDRIPKNILYSEIRDGSRKRGRPLWRYHDV
CKNXMKSFNINVESWEERAESRPIWREHLALGAAQHEAALIQRMEAKRERRKQHAVNLDSNSDNIWICETCNKLCRSRIG
LVSHKRIHQASD
>RTE-15_BF_pol#LINE/RTE-BovB 350-3298  [Branchiostoma floridae]
MTSFPNLENSSCGIVKERLLRCKKTLLVSTFNTRTLNSASKLGETAALANEYSIDIVCIQEHRLCHDDVIIQHKDMGNGW
KLLISSAEKGSNNATIRGVGLLLSPKAYKCLNSVESISPRIIVANFEGNPATTVISCYSPTNATDEEEVREFYSALADTV
KEIPKHNVCIVGGDMNAKIGQPDSKGSSYHSETNRNGKYLLEFINECNMLNLSINYTKKKGKLWSFSYPNGERAQIDYLL
INKKWRNSALNCEAYNSFSNIKSDHRIVTAKFRLSLRAPKRQSERGTRYDWGKLLNDAEVNVAYTNEAKRNFVELNDLDE
TKNANSIYANVIRAHEEAADLHVPIKPKVRKRVPWAYDKNILDKREALRKATVEQKSEVEINKMKDELDKAYEQELESYI
KQKTTVIQSAHEEHRGALAWATVNEITSRKKTKQGMLKAKSQQERVNLWHDHFSKLLGQPPNIVNIPVVPVIDYILPINT
SDFTREELMDCIKTFNNGKTPGLDNIPIEVWKTEALIDPLLEICNRTFHQDRADVWVSSGILPLPKKGDLGYTTNYRGIS
LSATAAKIYNKMLLLRIRPHVEPLLRDNQNGFRPGRSTLSQILVLRRLIEGIEDQNLKAVITFIDFSKAFDSIHRQKLME
ILRGYGIPDIIVEAINILYVDTKAKVLSPDGETEFFQITAGVLQGDTLAPFLFIVALDYAMRQATEQPELTGFVLKPRKS
SRHPAELLTDTDFADDIALTSNIVLEAQSLLHKVENASKIVGLHANDTKTEYMVFNQPEGTLISTKGQALACVKDFKYLG
SWIRNSSKDVDVRIALAWGAMSKMSVIWKTDLSPTTKISFFRAAVESILLYGSECWTLTKALKRRLNGTYTRMLRTVLKI
SWREKIKNKVLYKDIPPIAETIRQRRLRFAGHCWRKKDEVVHKLLLWNPNHGNRGRGRPRKSYTKQLAEDTGLDLQQLPA
AMDDKEGWRKLVMWRLRASSPE
>RTE-11_Crp_pol#LINE/RTE-BovB 2-1707 via tfasty with RTE-1_Crp_pol, 4 frameshifts and 7 stopcodons. [Crocodylidae]
EVCHAIKETKNNKANGWMAENYKAGGKELVLRLHILFFEFGTTAGNLRNANIVTIFKKGGKSVCGKYxDIALLSTVGKIL
ARILLNRLLSLAEEVLLESQCDFRSFRGATDMIFVALQVQEKCWEQHQDLHxPNKAFDSINHEALWKVLARFGCPEKYIK
VLRLLHDQMTAIVLCSGSETDPFVIQTGVKQGCVIAPTLFSIFxQSSWVLIKDHLPSGIDIEYRTDGGLFNLGRFYSKTK
VLKTTILDLQYADNCAILAHTEENLQTVLDLFGEAYxTLGLSLNIEKTKVLYQPAPGHECDPPPQITIKGKTLEVVEHFP
YLSSHLSQRVNIDEEIQHRIQCASASFGKLLxHVFIHCDLWKDTKIQVYNAVIIPTLLYRCEMWVTYHHHLKSLERYHQR
CLRKILHIKWEDYCTNTSILAEANVTSIELVILKHQLRWTRHCVRMPDSRLPKQVLYSQLSNGLRSRGGQRKHYKDTLKA
YLKKMDADIKSWEELAADxLQWHCNLNQAAARFEVKCLALEAEKRExRKEKERNPSLQPTLPCRKTCNFCRQVCGSRIGL
LSHLKTHQ
>RTE-4_NV_pol#LINE/RTE-BovB 510-3926 (several frameshifts at very N terminus, when comparing with RTE-1_DR) [Nematostella vectensis]
MAKLAYGQTPGATLDSGRGCLVPLDSYRPLKLGSPQSIRCFPPQSACFAGVSRTEVWKQTDKWTATTSPKKKGSNTKWPA
LIIGSWNVRTMLTGLTTDIRNINGLRKTAIINQELDRLNVDIAALQETRLAGSGSLKERHYTFFWHGKNENEPREHGVGF
AIRNNLLQLIEPGPPISERLMLMKLKTDDGTTNLLAVYAPTLTSSSDAKDAFYSELDVIIKHLPKNEALFLLGDFNARVG
NDQESWPICLGHFGVDRCNENGQRLLELCSLHHLCITNTFFNVKLRHRLSWMHPRSKHWHQLDLIITRRSQLNNVRITRS
YHSADCDTDHALVCSKIQSRPKKLHRARNAAKARINAAATTIPQKVLTFQELLESKLENYQELRTEDHWRHVKDVTYEAA
MLAFGKSDRRSEDWFGANIAHLQPLIEAKRLALQNFKLNPTSQSLEALREARRHAKEECKKCANNYWSNLCARIQSAADT
GNVKGMFDGIKRAIGPTQIKLAPLKSSSGEIITEKSKLLECWVEHYSDLYGTASFISPSAINHIERLPTLSELDAMPTKV
ELREAIKVISSGKAPGQDGIPAEIFKCGGDKLLDSLFKLLCKCWELGSVPQDFRDCSITNLYKNKGDRSDRNNYRGISLL
CIAGKLFARVALNRLQKLAERVYPESQCGFRSNRSTVDMIFSLRQLQEKCREQQRPLFVAFIDLTKAFDSVSRDGLFHIL
PLVGCPPKLLNFIKSFHDGTRGTVKCESNSSEAFDINIGVKQGCVLAPTLFNIFFSVLLRHAFGSADEGILLRTRSDGKL
FNPARLRAKTKVRKCTIRDLLFADDAALVAHSESELQSLLDRFSNACADFSLAISLKKTKVMHLGSEIAPTFTINDFTLD
VVPQFTYLGSTTSANGCLDVELGKRIGKAVTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRL
NTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRMENGRIPKDLLYGELAHGSRPVGRPKLRF
KDSCKRDMLAIGLDVDNWEKLAEDRSRWRSECAAALNSGELELKREAEERRQRRKASEIRTGSNPSPTSVLVCRSCGRTC
ASRIGLFSHGKKCQRSSR
>RTE-1_PM_pol#LINE/RTE-BovB 282-3607  [Petromyzon marinus]
MTSPGQTPIGGARRLNLYPRGSSRNNEKPLRVATWNVRTLTAEERLPLLCRELDRYRLDLCGIQEVRWTGSGSCHHEGWT
VLYSGQQTAKQQGVALLLNKRMKGAWERGGEVWEAVSPRLLWARLPINRRRGVVVVVTYAPTEDEHPWRDAGKADESDAF
YDLLSQVLAKVAPRDRVIXLGDFNARVGHDAGTWSGVIGGHGPDQLNNNGRRLLDFCAAHGLVITNTLFRHRRIHTTSWM
HAGSKQEHLLDYIVTDQRMRAHVLDTRTYRGADLPSDHRLVICKMRLPFFHSGGGCTPRTPFQPKVAWSQLSDESCKREF
HHRLRLGLASSPTPPDVEGKWARFRTVTHAAAMAALGTRSRPPQRPWLTEEVFRMVEKKRQAHCHRLQNPTSENEEAYRS
LRSEVRRAVRRCKDGWWSRVAEEMESASVARDHKSLFNSIKKVTCSATPITIIRGKNGDPISDPQEQVRRFAEHFCEVLG
EGKSLSQENIVAQSEDDPAEAAVPQILEEVTPCEWLAEVPSVEEVLKAIRSLRPGKAAGRDDLPSEMLREGGVCAQTALY
DIITTVWTTGRVPQDWKDALVVPLFKKGDRTDCNNYRGISLLSVPGKVLARIIQHRLARHAEERLAEPQCGFRKGRSCTD
AIFSVRLLQQRCREFQQDLHLCFIDLVKAYDTISRPGLWVVLRAFGVPDPLLTIIKDLHDGERARVKLRGRESEPFPVHL
GVRQGCPLAPTLFNIYFDHVVREAFNSCTGGISXWYRYNGRLIDARVRSRDGSLLLNHVMYADDLVIAAHSEEELETLLL
RLERATKRWGLTISPTKTKHLPGYFVPSDTPPPQLPIGDGAVVERVESFPYLGSVLMTGSSLTAEVSLRISRAAISFHRL
RNAVWKLPGLSLRTKLQVFSATVIPSLLYACETWTPLMEHLRRLETFRLACLRSILGLTRLDCVRSSQILERSGQGPIGE
LLRQARLRWLGHVARMPSHRMPKQLLFGRIEGAKRARHGLEKRWSDVVQEDVELSGLADDWYQRCQDRPLWRRLVKDATG
QLEAVALQQQRRAEERRSQQRAERRVAKAQQVGTVGGTGGASASHLSQSTRGTWVCPVTSCQRAFDTS
>RTE-1_NVi_pol#LINE/RTE-BovB 3-2803 Fragment, via tfasty with RTE-1_AG_pol, 2 frameshifts. [Nasonia vitripennis]
GGVLASGNFTYLYGSGGSLGTGFLVSKSIIHSVKSFKSVNDRLSYIIIEGEWYRYVFINVHCPTEDKEEEAKDLYYETLE
QVIDQFASYDTRIVLGDFNAKIGREEMFRPTIGKESLHEASNDNGIRVINFAAAKDLIIKTTCFKHKDIHKATWTSPDGA
TQNQIDHFLIEKRRRAYRGADSDSDHFLVVAKLRARLVANQNSKRTNKVESFDIEKLRDRTERIRYQIEINNRFQALEEA
NTSPEGNDEPNSLWGDIEKKVKEAANKVLGKKKKPKSKPWFDEECELWFERRKKAKLDSLHNRSDRTVEEYSNVRKQAGA
IYRNKKREYQKNLIRRIETNSKENNPREMYRGINAIRKGFRSRAQLMKDENGDLVTNDNELLSLWKNYFDKLLNVHENSE
ELGDEIHTAELHVEEPSYQEVEAAIKKLKNNKAAGNDSIPAELLKYGGVELTFKIYKLVCAIWKNETIPENWKESIIIPI
FKKGDKTDCNNYRGISLLATCYKVLSNVIQARLTPFAEDIVGDYQCGFRRNRSTSDQMFTIRQLLEKKWEFCETIHQLFI
DFKKAYDSIKRSKMYQILVLLGVPKKLVRLIQICLNGSTGKVRVGGNVSEPFTIRDGLKQGDGLSTVLFNLTLEYVVRKM
QVSQLGATLNGTTQILGYADDLDILGDCRETVARNAEILIKAAEYTGLEVSESKTKYMIVDKLGICRGEGDLRVGNFTFE
KVSEFRYLGTTINDRNEINVEINKRLHSGNACFYAVSNLLKSRLLSKNVKIRIYRTIILPVVLYGCETWALTKQADNRFR
VFENKVLRKIYGPKKDEETGEWRRLHNDELHNLYASPNINRIIKSRRLGWAGHVARMGDDRTAARVMKGRPMVTRPLGRP
RRRWEDNVKADLVEIGRVGVDRRGASWVGLTQDRAAWKACVDEAMNFRVPNAT
>RTE-3_AG_pol#LINE/RTE-BovB 2-1564 Fragment [Anopheles gambiae]
SIGADDEVPPPSLDEIASAIKQLKSNKSAGSDGLAAELFKMGPERLTVEMHQLIVKVWEQEELPEEWKLGVIHPVYKKGD
RLDCSNFRAITVLNAAYKILSQILFCRLAPLATNFVGSYQAGFVGGKSTTDQIFTLRQILQKCRERQIPTHHLFIDFKAA
YDTIDRKELWSIMQRYHFPGKLIRLLEATMNGVQCKVRVSNLTSESFESHRGLRQGDGLSCLLFNIALEGVIRGAGLDND
IRGTILYRSLQFLGFADDIDIIGRTTAKVCEAYTRLKREAARIGLRINATKTKYLLAGDSDHLGSSVLVDGDSLEVVKEF
CYLGTVVTSDNDISSEIRRRIVQGNRAYYGLHRLLRSRRLRARTKCEIYRTLIRPVVLYGHESWTIRAEDANALGVFERR
ILRTIFGGVFEHGAWRRRMNHELAELYGEPSILTVAKAGRIRWLGHVMRMPDSCPTKKVFDSDPQFGIRRRGAQRTRWLD
QVKRDLSEIGCLHGWEAAARDRASWRXIVDRAMSHRRALS
>RTE-4_BF_pol#LINE/RTE-BovB 2-3082 fragment [Branchiostoma floridae]
TKGKKQTLRIGCWNVRTMTPGLSDDLQEISDARKTAVINNELLRLNVDIATLQETRLADSGTLRESDYTFIWQGKASQET
RQHGVGFAIKNSLLDSTEPREKGTERILTLRLLTENGPLNLVSVYAPTLCSQEETKDEFYCQLQTTIQGIPKQEKLLLLG
DFNARVGADYDSWPNCLGKFGVGNINDNGQRLLEFCTINDLCITNSFFNTKPQHKVSWRHPRSKHWHQLDLVIVRRCHLS
DVLLTRSYHSADCDTDHSLVCCTIRLTPKKIHRSKPPGKIRIDARKTQIPEKVEEFAEALEAALLKKPASENAEQRWSYL
RDTLHRTALGVFGRKQGKTQDWFEEYASELNVVIEEKRTALLEHKRSPSQLTLQVLRTARSKVQRMARQCANKFWLDLCK
SIQSSAETGNIRGMYEGIKKAIGPTQNGSAPLKSLSGETITDRGKQMERWLEHYSELYARENTINETALDSIETLSVLWE
LDAVPTLEEMSKAVDSLRSGKAPGMDGIPPEVIKSAKGVLLPELHDILCKCWEEGEIPQDMKDSNIVTLYKNKGDRSDCN
NYRGISLLSIVGKIFARVVLGRLQRLADRVYPESQCGFRSERSTIDMIFSLRQLQEKCREQRQPLYIAFIDLTKAFDLVS
RDGLFKILAKIGCPPKLLRMIQSFHTGMKGVVQFDGSSSEAFDIRSGVKQGCVLAPTLFGIFFAVMLKHAFGSSAEGVYL
HTRSDGKLFNLARLKAKTKIREVLIRDLLFADDAALAAHSVNKLQTLLDKFSAACQDFSLTISIKKTQVMCQGVDHPPAV
TINNYELEVVPKFTYLGSTVTDNLSLEAEINCKIGRAATTFARLQKRVWGNQKLTIHTKIAVYRACVLSVLLYGSETWSL
YTSQERKLNTFHMRCLRRILHIKWSDYVTNVDVLTRANIPSMYTLLTQRRLRWIGHVCRMPDGRIPKDLLYSELATGTRT
RGRPHLRFKDVIKRDLKALDMSINTWESLAANRTLWRQEVKEGLKRGEAKQRLASEQRRSKRKNKQ
>RTE-3_SP_pol#LINE/RTE-BovB 15-2833 Fragment, via tfasty with BovB_pol, 1 frameshift.  [Strongylocentrotus purpuratus]
VGTWNVRTLYQSGKLENVKQEMMRLNVNILGLNETRWLNNGEFVIDEYRLIYAGGEKHERGVGLLLDPDISKSVLGHWCV
SDRVLLVKLQGHPFNISIIVVYAPTADSADEVIDTFYDSLDKAKSQCKSNDIVIVLGDLNAKVGSWYRGQAVGPHGIGER
NERGDRWVQWCEGENMVITNTWFKEHPRRVYTWKSPGDIVRNQIDYIAINSRFKRAVKQSKTYPGADCGSDHVPVICTLQ
CKLKKLKRPKVVKILDFKQLSKPDIRQEFTVQVKNRFELLIDEGEENTWETMRNILVETAEEYVPTKERKRRNKWMTEEI
LLMMKDRQKIGNRQCKKYRDLDKQIRQKCNEAKESWLNEQCVEIENQFDKNSNVYQRINEISGKKSGCSNPGCIKGKDGS
ILFEMKDKMSRWTQYIGELFEDSREAMPSFADEVKGEKILKSEVRWAMSKMKKNKAAGPDGVVTEMFEALEEYGVDRLTE
IINKIYDDGTFPDELGRSIFITLPKKPGAVDCEQYRTISLICHITKIILRILLLRARSRITPMVGREQFGFVKDAGTRNA
IFVVRNITERAVEMQKDVYMCFIDYSKAFDKVKHSELFEELKKLDIYRKDLRLLQSLYWNQFACIRVEGECSEYINIRRG
VRQGCVMSPDLFNMYSEIILRELEDENGIQVGGHSITNIRYADDTVLFSESEKDLQRLLNVVVKESERMGLEINYTKTKC
LVVSKKSSPKCNLKLKEQIIKQVSSFNYLGSMIAEDARCETEIKRRIALAKSAFSKLGKILTNRTMSMRTRIRVLNCYIY
PVLMYGSETWTLASDTKKRLESCEMWFLRRMMKIPWTDKVSNEEVLTRAGVQRKMIREMLIRQLKFMGHITRKEGLENLA
LTGKIVGRRSRGRRRILWMDSLQKLLEERGVKELGVVLIQKARSRGLWNSMIAKVKRYGT
>RTE1_Mars_pol#LINE/RTE-RTE 299-3172 [Metatheria]
MVAEWQKKGAEGAKNHIVFRPSININLAVGTLNVRSLSNDQQVDILLEELNHINLDILAINETRRQKEVAAKWKDGSQVL
LGEANKGIGRVGFIMYPKATRNIISWDIWSSRIAVLMISICKKTTMKIIAAYVPTSVAEDEEVEKFYEELNKTLQIKSTY
TLILGDFNAKVGIGEDGEKYIGKYGSGIRNERGQRLVDYTEASCLYIMNTFFEKRIRRYWTWRAPNNITKNEIDYILTDR
KRLVTDVGVIPESAVCVQSDHRLVRAKIKINTKLEERIKMRKRYGIQLKQLQPDLFKQVIDAEKWEMDKRXDIDTDYNXF
XXKFNRCKSIATTRRPKEPRNHLSQQTLDXLAKRRXMAAKGNTGLEYKLICKILRRKMVEDYEQYHLIKQREAVEGKTSL
KKAWQETQLSKVIPRAFKDEXGRKTTNRRKMEKICKDFYNKLFSPSXTVEPPHLDSNITVPDVLTEEVEMALKKTKMGKA
AGLDQVYTEEIYAGGDTILRALRDRFSRYLKEGKIPKAWRKSRTLLLPKKDDRENINNYRPICLLSHLYKIFMRIIYTCI
EGILDEGXRREQAGFRKRYSTADHIFTVTQLTERCREYKIPLCLLFVDYKKAFDSVEQNAALKALLQQGVSHAYVKIIQD
SLKDVTTEITLFDDPLIINIKRGIKQGDVCSPKVFATVMEDVQHRVQMEEGFPIDGEVLQMLLFADDIVLIASSPRTLQS
LLNEIHNHSKEFGLTIHTGKTKWMKNAYCPDYDMQLDGQPIELVHQYIYLGQTLQMDNELGPELNRRKRAGWIAFGKLHS
AFNDPKLLPETKAHLFNTNILPVMLYGCESWNTTVSEELKLXVTQRAMERYMVGMSRLQHITNEELCRRSGIKDVIREMY
DRKRRWAGHVVRARDNXWTAYVLHWYPRNVKRSRGRPPACWVDPLWRIYGRTWTRVTQDEXAWMGCDLHHWREYPHR
>RTEX-2_NV_gag#LINE/RTE-X 2-1762 [Nematostella vectensis]
MADIVGITEHKKLLSINKKKQFRWSGDSDQLKEFLLSYLEEGNNDKFVSISRNGATSVLKFESVTVNFYTSTNTLQIQGA
GKDGYISKLTDLVNTNSGNNKNAETETDQAEAGEEISQSSKKQDEEKGEKAMHDARYEEIEAFMATQREFNSKIESQVSK
NTIEIGEQSIDLEDWKQKIKNGLSDVKMHCESQIDSLKFEISESIKDVAKQVSNLSNKVTSEFKSVKNKSASTAETILKI
LGDLGEIKDQLLKTEETVAQIHETTQSTHSREQTDAIEVCSQETSESHRIEILDQSRQSGQREAIDINRQYASHRNSRLE
TPRDTSSHPRTQQRENRPNQPSSAAQTSGSSNGPVLLLGDSVLRGINNRRFCPSRFVNKQYVQGGTQEMEEYIDSLTKED
KNDYECIVVHSGVNDLRKSRATDIADNMQRCVQKLKSRWPKANIYVSGVLYSLKGDNVKVDDVNYYYEEICRNNQGLCNF
INNQKVTADRFGNIDEDSFYDDIHLNNRVGTKKLVTNIKVQVGLRSEDKESNREGQQARKFNRQRRQRPPWNSSYNEAFP
TLPPPFRALDALAEYFKRQGFAHRPR
>RTEX-2_DT_pol#LINE/RTE-X 624-3890  [Drosophila takahashii]
NSPRLRSYIEQTKFKKLNVPNVVPSLNVKIVSYNIAGLANKTLFKQFFNYVTQFDIFLLFETFLTNDETSFANYFPNHLL
HWIPAVRVAARGRASGGSVYGIRKQLVNEGHITFTSKENAEVIEINTKDEKLHILPVYINCNNWQADFEKVYDFGLTAGC
NNLMIIGDINARIGKAQATSEPTNIDLRTSSTIRKSKDEISDNKGAKIVEMCESLGLTVMNGRTISDQEGEYTFIRGAAR
STIDYCLIQGKWHDVVKDLVVGAQLLSDHMPIEVLLKLNLHEQVDSTQPKLNRRLKWKDNHLRSYTDALVSGVQQIEDLS
GSTLLVKLLNLIVDASRPMQQSLNFSRKQPWFDVQCERARKHSFDCLKQLRRNEIMGTIYKTAVTNYKRLCKDKEKQFWI
NMERQLQEVRDSKQFWEIVNKLNGNKQKKPIKVRSTDLADYFSSLLSQIQNESEISYAKPLLFSDHMDSPFSPAEIESAV
LTLKLNKAPGEDRITAEFFKNAPLCFIQRLTDAYNEFYSHGIFPDCFKKSLISPIFKKGMETDPSNYRGIIFAGALLKRM
TTWVNRENILSEFQTGFRKGFSTVDSVFVLTSIAQTFLQQKRKLYIFFVDFKAAFDTVNRNSLLYKLSQLGLSTKAILAL
SSIYEDNKASVWDGSELSKWFDTNSGVKQGCILSPLLFSLFVDDVVDFLPGGVTVNGTHVKTLMYADDMCLLADSPETLR
DMIASISEYCKVWNLTINTSKSKIMVVKGTGGRHARNEEWQLNGIQLERVKSFKYLGVTLTTNMSFYTHIRDKLKDAKIA
MNATWKNFLGRKNVKMSAKYSLFQATVKTIMCYAAEVWGNQRYEDAERVLTFFVKKIFRLPQNTPDYAIFIETGLPSIFS
YTLQQHFNYIDKVMHMPNSRLPKIIAKSLCERKELPFSRWTDIATECSCLLDLEDASSWSRTHAEIIARYHDIERETFIT
KAKNSASRSLYRNLEHNLYEKNYFHDQHKGELIKHIFQARTETLPLNGRPYSSNTSLECSLCNMREIEDVQHFIAVCPIL
REIRFTCFTKTTLCESDLHSLLNGENWENLAFFITKASNYRKKIILEQF
>RTEX-3_ACar_pol#LINE/RTE-X 1412-4780  [Anolis carolinensis]
QLHLLSWNIMGWTNKFHDADFAIYLQQFKIICLQETWATETNPPSLHGFSAYSVPAVKTSSKGRGSGGLAIFISVDLHVD
IQSLDSSLPQYIQVLLIKSTFFGCVICINVYFPPRLAKNGDPNNVWFRLSETLTCLECQYPSTKLLLCGDFNARIGVGMK
QVEGTNFGQDGQVTSADRVSQDTIRNKSGLSFLEVLSLHQLHCLNGTQHDITQGAYTYVTNRGASTIDYIAVSADLLPDI
QRFAINNRVESDHFPLSLIFNFETSPPAQSSQNSQNLNGIHVGERRIRWSVNLGNSILHILESNPYRLHRQYILDSNTDI
LHAYQSIIQNLRPKLVCNKQLNPSKVGINRWFDSECRSARQALMEYSKHTLRKNDAAVTVSLAQMRASYKALLKQKKDTH
VRAQWNQLALAVSEKNEKQFWDIISTGMHTVRPVVLGHISTQQWFDHFSKIYGATSPGNSTSAPITIGLPHWSPVSTSEV
KKLITALALSKAPGENMMPPEIFKNFPEWWAPILAKVFSQINNTGIIPEGWKQSIVVPIHKKGDKQDPNNYRPISLLDID
SKLYSRLLLNKLEDWEYDNQIIYPEQAGFRKGQSTIDQCLTLYFLAQQAIAGPTKHLFVAFVDLAAAFDSIDRNLLWHKL
ANTSMDKRLLFLIKALYTNTTARIRVGISGSLTDPIHTNKGVKQGCLLAPALFNLYLNDIIPALSGPEFFPPTVGSKKIS
ILLYADDMVLISLTQIGLRRLLSKLGTYCSEEKLNINYNKTKVMVFGRRHSQHRWTIRGHQIEQCQEFKYLGIHFTEKLS
WKSHIEHTKTVALKTIGAILRFYNTAGGHLVVPALKIFQSKVIAQILYGAAVWGWDETQTVKLETLQNTFLKKLLRLPPG
APAALVRAEVGLPSIRSRIHFTLFNYWRSVKDSSVRVLPRGCFEQIAKCKVWNTRYQKLLEFHPTLTNTPSILNSREKLK
EYIFNHSVHLDRQAINNSKFSHWYRLYKLDHXRAIYLTRLTFPKLRQAFTALRFQSMPTAVIDGRYTGIPLALRLCVCGA
PEIEDLPHYLFSCPLYSEPRTKILGPILYPLLMNTVSERIFYLLSDTNPAVTHKVALFALAAQKIRAKLISDVAVDCAGD
AFN
>RTEX-13_BF_pol#LINE/RTE-X 216-3791  [Branchiostoma floridae]
MNMCIPQRTQMPRSRLSLNPCKTRNFGISIGFWNIHGLGKKLEDSKFRNELNGFDFFSLMETWHTGELSFPDYLYFSSCR
TKSKKAKRNSGGILFLFKKEYRNLVTKLENKSEDILWVRLDKQLFNSDRDIYLASVYISPQRSTIHANRTYDIFDILEED
ISHYSNLGDILVGGDFNARVGTLNDYVTDDTPIIDSKILPKDYSFDHPLPRSNMDETQPTVFGKNLIDLCINSKVRILNG
RTPGDLLGKPTCYQPKGCSVVDYVLASEDIVLRKSIFFHIEALSPLSDHCKLTLLLEGNPKPLQSQQKVNKLSTMPYRRF
TWNSDSSEKFTEIINSVSFSSNIDRFIHKNYELKPESLETALQDLVTPLQEAGKKSLSLHSTKKTKRQPSSKQSNKKKWF
NQTCASARRELQNLAKLLSRNPRDPHIRGSYFVKKKQYTRLIRKMKKEHKEKIFKQLNSLSDNNPSGFWSLLKEYKSNDK
TDDHETIPAESLHSHFKKLYGIDPNTSKPRSSFETHIENELYKLEKNLENNPLDFPISKAEVKQALSNLKNGKASGSDLI
RNEMLKCSSNIILEPLVKLFNLFLSAGYFPHEWCTSHIVALHKGGTKDDPNNYRGISVTSCLAKLFTSILNTRLTEFLDE
YKLISPNQAGFRKHFGTRDNLFVMDTLISKYTSENKRLYSCFIDFRKAFDSVWREGLRFKLLNSGIGGNFYSLIKCMYEK
PSTCVKTSSGLTPPFVTNKGVRQGCNLSPTLFNLFINDLVHELDNTECSPPALNNLLVSSLLYADDVVLFSETEKGLQSA
LDKLNIFCTKWKLEVNLKKTKIIIFNKSGRLFSKQNFLFGQERVDIVSSYCYLGITITSSGTFSLAKKQLSNKARKAMHS
FKCLTRSSVSPDSLLRIFDSCVKPILLYGCEIWGTEKSNDTSPIEITHNQFCKNILGVSRNSSNLACRSELGRFPLDIDI
SVRLVKYWLCLTQMDYTKHPLQVNALLEQHNSVVNGRRRSLLQRVKEILDYSGYSYLWYSDNSLYDPVYVCNMIRNRITN
MYIQTSLHNISIDTGKLRFYKTCKSVYAREKYLELVDFELRSAISKVRISAHPLEVERGRYKRLPVCERICKYCTSKAVG
DETHFISKCSFNETERITLFREVTKTYPNFPTLTDKQKATFLLKSQNPQILENVGLFVSLCFQKRSQTQPV
>RTEX-4_BF_orf1#LINE/RTE-X 220-2649  [Branchiostoma floridae]
MASKMAATASPDNGPTIRQLLHLTESASNDEVHEAYSIFVQEFTKEQEYVKKLRPAEKKTYRHKISGKYFSEVSAAFLSS
MDTRNKISNPTGEVGNHRVTHNSCSITIDIPSNTLSSWKTVCASYYGVQGKDRVTAKGTKLSTQFSTTFKDSAQQPEREL
GSIHITVYSTHRLLIQGTCFALWLCSHYDTLQAMVLADAAERHPSEADYSGTVEQATVCAVCDKHEIHCDKFVGCDDCAS
WTHFDCTGLSEETKSLLKNTDKKYHCINCHIPQDAIPSTEQSEADQRHFAPPPHCTQADKNAKQSNSTMKGPNHQDDEKT
ETLQTAIMDLEASLAQMKLQSNTFECNVSNQLDMIFKRLDSSCPPAKQETEFKKLKEDNKKLQEENKKLCNRVKHLESLV
TSLQTETTSIQGDMSEVKVCHSTLKVKVANIKEALLDQAVAKNNKKPDQNLVLDYAVNTSNRFDALQVDDDPEPNPKELI
RSITNRAPSAKPRSQNSRPKSRPETKRVVIVGDSNAQKLKPDLLSPTADMPKPIWAPTLPDTLSALNKLSKEQPTPDTVV
FHVGTNDVMSKSKEAVINEYETVISTTQSLFPSANVVISSVPPRRDTNKRPNVNEDIASINEHLKNTCEANTTLTFVDHP
QLWLDRDHNVKMFVRDGYHLSSDGVKVMAYNLKKHATDPLGLQPKGQGQHRRMENQGRATHHNDKRRSTPRAPPKSERHA
SPRHGYDRPNYAMPRPSQHLPTSPPFLGPDPHAMGPYHPPPAPWYNEWPSAMEAYGDSYRYNANPMWNVEPAYNRGWNGF
WTQGKTSRF
>RTEX-2_ACar_gag#LINE/RTE-X 880-2616  [Anolis carolinensis]
MVSTRAQLRKASTMNTVPNLVQKSILEYYDPANTGKEPEASEHQLDHEFMNLTAMGRAGTSKTICTTAEKMDEDVSSAGL
SLNEGAANWSIDPGLMELTPPPPPKRQSAAYIEIINTLKDRIGRLDAIPPENAIPSLHDLMRDQCFLVEQTAEKLFLRMD
MLQREVSGLKATIGALVGLVELGILTAAPPGNCPSQEPEDSIGSPDWQADCEPEVAKLAAESTVKQLTDIMEDWNLNTRR
CPLDGGNELGPISTKSTSVLSLNFSDSKFQLIDEYLEGHSDTSPSPYIQGIHNNMDNSKLSTTSKNTNYPVVNEALATGN
ERPTLTALQKRLRQMAEGRGEEYSKLPKWRNKKPVSNFHQSRKRQPAGGQVIIHNWPVKTPNGATISAKEHLAELQSALG
HSLDLNNGVFCKRLTQNGQRGSIELTFQDPEVRRRFWSLLHMLKEDLLLELKQAQIEIRPGHSRYPESSLHNKQKSAPRK
GNWSGRRWRSRSHSTPPFITYPNNIQLQQEHKIGCKGHQRHWVDGPYLGSPKQGCAPGFFPRSSGPHHGGPNDREIRVNW
ETNKRINPEHFQSSTRYPN
>RTE-16_SP_pol#LINE/RTE-X 1-1722 Fragment [Strongylocentrotus purpuratus]
DHIFVLKSLLDIYLSKRKRIYCAFIDYRKAFDMVDRVSLWHKLLRSGVDGKVFTVIKNMYSQAKSCVIVDGQMSEAFQCD
VGVRQGENLSPLLFAIYLNDFEDFLSKHFKGLKFLVENVCADILDKEVNKDLFLQLYTLLYADDTLILADTAEELQVALN
ALSQYCKIWKLSVNAMKTKVLIFSRGKVRKFPVFRFGEDEIDVVDDFVYLGVQVNYNGSFKKAISKQVSQARKALFSMSL
KVQRLKLPLDIQCELFDQLVLPILIYGCEVWGYEDLSQIEIFHRKFLRSALCVNKFTPDCMIYGETGRAWLANSIKHRMV
SFWLRIVKGSPSKYSVKFYFLQRLISQNVDMSTSFKWLSCIEKILNHAGLGIVWLKQGEGFSNSWILSTLKLRLNDISKQ
DVMATIWTNSVCLNYRIFKEDCLFERYLVLLSKKDRITLSRFRCRSHRLPINNNRFKEAVNEISIECPCCDMHESGDEFH
YVFVCPFFRKERELYLGRKVIVKRPCTSHMLNLFSCSGIGQLKKLVLFLRIIMSYFARLYTCKSEQSNHMSPIKRNVTTR
SGRLIKQPTILDL
>RTE-6_PPac_pol#LINE/RTE-RTE 119-2914  [Pristionchus pacificus]
MPLSTFRIGSLNTRTLKSDVRVAELEDSVCSVQFDVIALQELRRCGQTSLTLAATGHLLVGYGIRSANGTGFLVNKTWAS
NCLFHKVNDRLSYLDLPAIGLRIINAYAPTSSHSDQEYENFLNDLATLVTSSTDRVHLPGGGRGHVVVAGDFNAKIGSRI
APDEEYVGNHGLGKRNERGQTLADFCCELNLYAHNTRFMKRETRKWTWESPNMATRNQIDFIMSRSRSNVQDVSVVGSLR
FTTDHRLILARFKFETKGRKFYHKPRSLLQFDRRIFTAKIHATTVNFKTYDTLSKDISSIGKESMIPVQKVARFSAKTMH
LFSERKKLRDNANTAQKRIEFSLTSKALRVSIHEDLKRKHLEVVRDAVRYGMSTRRAIQSSQIGRSQLTQLNKPDGSVAT
SKSEMSSVVQTFYNELYKRTLRPTRLPLRSNEPFLEFLPSEVTYAIRKLKENKSAGPDSITAEMLKSGIDIFVKPLCDLF
NKWVIEEIVPNSLPDSVISLIFKKGSQLEISNYRPIALLNLVYKVFTSVIDTRIEGTLNSAQPHEQAGFRRNYSTTDHIF
TISELISRSVEYNFPLYLVFVDYLKAFDSIEFGSLWKALLNQGVHAKLICVLKDVYERGKVFVRLGKEKVRIHVERGVRQ
GDPLSPHLFNCVLEEAMKQVNWNQYGVNINGKRLHHLRYADDLVLISHDPKEVQNMLGDLCRESRKVGLVVNIQKTVAMS
NRTLYPFTIDHQSLKYVTNFIYLGVRISFDQDTMLEVNRRVGSAWKGFNRFYNFLTNRRVEMGFKERVYKMCIEPALIYG
SELWSLTKKVRNRLVVVQRSMMRKMAGITRMERRSNEWLSQKVPLPDVRIQAMLRKWNWARRLALTEDERWDKLIMEWTP
IDRTRPIGRPKTRWRDELTELLGVNWQSICRRDPNAWNLAIIQQAQSLNIE
>RTEX-1_AMi_pol#LINE/RTE-X 1489-4335[Crocodylidae]
MIANNPGWIGKQLGTCLDICLLIRFTIPRTGSWIIANIYMPPALGREQASDKWDLLIEHLESIKLEYPMDKLILVGDFNA
RIGGLKWEDEDYLLINEIWGIDVPSFNDTGTNNASLRLQKLLLTLNLRSINGSYPSITSKNLTYTSVRGSSTIDYMLIEP
FVWGDIADFEIPFRLESDHLPLVLNLKKEPDTPPVLXSDRRTPIFVNRKLKWDTHLAEKVTDKLHADDLSILRNLVIVAQ
IPEEILKHCQQIKDLLHPLLSVPVTSHPIQTFKERGASWFDKECVEQKRTLNRKARELRKTGYTGTTFRSEFRKLWKAYK
LLLQNKKKEYYNQQWDKLRSAIIAKDSKTFWLLVSKGTANYNYNVENNITADSWVEYFSNQFTSSMEQINSNQGGNIPVT
DTTKYRVTKDQIEHLLKVQRKNKAPGPDRIPVEVYIDNIKWWTPVLEKWYNSITELGQIPDSWKGSTIVPIFKKGLKDKP
ESYRPISLIDVSAKIFGRHLLYHLIAWVKGENILHEHQTGFRDGYSTIDNIFILQFLRHKYTQMHKSALYVAFVDLSRAF
DSIDRSKLWEKLLNYGIDPSLLHLLIEYHKDTWAQVRWGLRGELTQKFQTQKGVRQGCILAPLLFNLYMNDIIGNMQDAH
FHPPKLLATPIPILMYADDTVILSRTPIGLQRAITTFEHLCGQNNLKINYDKSKIMFWGSRLMKYPWNMGGIKLEVVKTY
RYLGVMFTAFPSWKHHIQSVKTKAAQSAVAIKKFYETTAGRSVQAPISAYKAKVASQILYGAEVWGYAASNDVDIPQNKF
LRALLGLPPSTPASFLRLETGLDSILTNIIIRMAGFWFKILPLLPSRLLKLCYIEDINNPPSLQSPWLAFLSRTFALSGM
GHYVKDNERLFSPIEKVRVFQRFRDIARQNDFAVARATRIAPLYILWKLDWGGEKGIYSWISTINGEPL
>RTEX-1_DT_pol#LINE/RTE-X 1262-4624  [Drosophila takahashii]
MPKVQVRKLNRNKNKCIKCSPMLECSNVVGVNAIKESDTIERLEIKILSYNVAGIKNKLIYNDFFQYIASFQIFILSETF
LESKLDAVEVKFKDFVLRWVPAIRTSARGRASGGMIYGIKRELHEQNIISFINVDEAIIIQLRTVENENLHLLPVYINCN
HWERDSGMLHEVLNHVRLSESALIIGDCNARLGEAQLLGFDQQLGTSALDEARNAKDKVTDANGRHLMDLIELFGFTVVN
GRSAGDPLGDYTFMRGEARSTIDLCMARGTWIKTIKDLEVNSQIFSDHLPLVVTVTLSTTSNAVTAPLGLLPSLIWRNRE
KENYRTKLDRNLATSCVADLRTPDEIEGFLTECIIKAVNTRGRRKPRDFKQEWYTEQCEAARMLSFNMLRQLKSTNSASA
AVMYHEANAAYKLTCQKARTQFYINLARSLDSITDSRTYWTTIKKLNGSSFVKSREVNADDLGNHFRDLLAPPDWTQSLH
FAMPSVQNPILDGYVTGQEVENIIAMLKERKAPGPDRIPAEFIKYATPQFTASLVTAFNKFLESEAVPKSFQKAIIFPIF
KKGDPKVTSNYRGISFQNALAKVFAALLLERLKNWLRVCDILTEFQAGFRKGYSTVDNIFSLTSIARSYIDGGKKLYAFF
VDFRAAFDSIDRRTLTYKLSNIGISTMFLNVLQSLYTDNMAAVWDGEQLSEWFATEAGVKQGCLLSPLLFSLFLNDITDS
LPCGIQIGGCAIKALLYADDIVILAESPDELQEMINALHKYCLLWGLSVNTEKSKVLIFKRHWRRLAQNEKWNLGSIQLD
IVKTYKYLGVWIYHNGRFNNHLLEKLRDAKLAINCTWKSLLGKKDVPMSSKYKLFSAAMRSILCYGAQVWGILPYEEVES
LLRFFLKKIFRLPRFTPNRMLYLETGLPPLHIFTAEMHFRYIQRVVSMPECRLPRILANYLVQERKQWVIEWVTLAETYG
ERLQLGDPSQWSQWTQRILVHMQETYRTQFETESRRSATRLTHRSLEYDLGVNNYFTDAFTVEKIRTIFMARGEILPLSY
IPNVTASDTVCPICNMREQENIVHFIGHCPILREIRLLHFGMAQLTRRAVYDLLNGQCWSTLYNYINQALQYRNNILMEN
F
>RTEX-1_BF_orf1#LINE/RTE-X 33-704  [Branchiostoma floridae]
MPSILYPDKQVHKQPGMTIPEAIDIIETTPFSNPKCIVYHVGTNDVKQERAASGVTENMRRLVATTHDKFPNAAIVLSSI
PPRNDRHLMEIAKQVNAFIHILGQECGYISVADNDNMEENGSIKRVLFKDDGYHLNRGGVKVLAANLKEAIHPTVGLGDK
LQRTSEARTRACGGTIYQGYNMTGLWNDGVQHTNPADGDVTLSPHSNPTVATTICTWTGFRQT
>RandI-4#LINE/R2-Dualen 1-7647 [Chlamydomonas]
KLGPTPAALAQDPPTNPTGGPPAGPNTTNSPSPPTSANPGPAARSNTATRIVPKPAGPTKRPARRTPNPTPKLRKLATGT
PSAPPPAKRLHQTTIATSHKRRHTATLQNTPTEPTNGQAQASPSPPPDGRISILTLNTRELLSHHESILHTVTTHTPDIL
FLTETKIPTRLHYSMGSAKKGLSSHYQTYTSNAPYNPREGTRPHAGVMVGVTHRFSRPSGTTDMNAHNTDSRLAGHVCHI
RIAPPHSTPVHAIGIYAPSDDATRAAIYKYCTDQAAKTTAAKEHLLIGGDWNAVLFPSDRSTGQLNATDRAHIAFTTSAG
LHPLTPPTHEHPRPHTYLQDQATAPHMSRIDDLLVSHHTHATITTTGGGQEAVHECGDALDHRALLSSVPLAALRLYPFP
TAPAAPSDPDAWVNYHPPTKDQREKARIKMEETIGQEIADLLNTLHPAHLAITNKLYPAGLTPAQAERNTPSPAEFRALP
EVSAADTTSISNTLESILQKCLDVLKSYCDKKPPRASTTSPRHHTSKTVTRLLTATSKLKERLTAALTVTNAAGATPPTT
SPHPAPTPPPNTTSPTPTPPTPAEADTPTAIRSQLLNARTLLRAAKKEARKLNTKRAARAFRRLVATQPKRAHQKIFDET
DQPRGTPALTDPTTKEVHTAPEKILSSIHQHFTAQLLPINGPRTGHYDIPHSEKQYPWSRPDAPDRMPALSKPTDAPATL
LPGIADSTTFFGCVNHLSRRKAPGPDGIPNELLQTIPTSLQTAIHQLMTLMWVKAHIPTHWTQSDTVLLPKKGDPLLIQN
KRPIALANTLYKLYTSLITVNAALFSEQAHIFTESQEGFLRGRNTERQVQNLLHAIEDAATTGRDLFLLYIDFTSAFNTI
DHDKLLIVMHDLGYPTDLIEVVRDLYGKAATSVRTEHGTTPPIPIQRGTVQGDVLSPLLFIIFIEPLLRWLHVGGRGYQY
GCLTKAENDKHNLSSGAFADDLVTATTQISNLRIQVEKIEKYAAWGGLKVNVSKCQLQGILHGRARADPTLGGPRSKPHQ
AALARMLEGQIRIDGTAIPYKPPHESYKYLGIHITPTLDWSAQVQYIREKIKKRGQRIATSLATPDQKLRMIQLTIHPAV
AYSLPFMPYSTHDVTSLDSLIASTAKMCYGLKRGFPTRAILQPTNALGLGVGSIRELYVRRAGKALVQALNDGGRLGAVT
RAMLHLQHSVAQKIPADQLRTQCRFYTSLRQLSLITDAGLELTQQGSAYHTTLHGLSALLARTVPPGADAEQALPFRLIQ
PLLELTSDFRELLTPDRTCVIDANTLKNTWPRAQRRHRLALNRLTLALHAETRTRAKTHNSTAPLTTAQRTLPDGHTFTG
LHTAHTAPAAVDWGTLNRFLRQRAPATGQTANAGETAAATTAAATTAAAEPEEDHHAGENHAPAQTRRPGTQQRKRACIK
MVREPEGRGSPPADAPAAFDWDPSLDPLTEAHCADLIHTAPSLLGKSKPQNPAAHLRGLLLGPTPPATFTHRHKLSQEEQ
DAYLAATSDTWKHFSETYRTKALTTTNTLYGQQERVQQVIAHTTSKGAPFYRVQWEPTVITPGSLTLYARNRYRPKPGGL
TWLLTPGNEPRVLVEWEDLEEPAAILDAQDNKQELLDALNARLAVPLGPRPPPPATDTHLSHDQRQGRWTDASNDTARGQ
RTLRHYVDINVEPCNPSRDIHPTQAYTVQLGTVLDPGSPACGTHLAHVYDPRGRCIGTISAEQLSLLWQRYQHAQTTWPK
VHAKHDQGRGFAAAIARLLLRYKPGGGSKSHPVTEKGECMLCEGLTQTLHTAIGSTTELFASPLNVSDAATTYYTLYEED
MLFGANYDAYSQPWDGVAVACPEPNTEDGAHAVRWALAWAEHTETLTNTRNPPTTATLLILPTQRNAPYTRYLAHPRVTL
LGSISATTTHALLGQIHNDTGITLKHDLVLVSNTPGAQLAQPIRDALGTSLYLSGMPVDPQPQLTWAHTRWVTKQVRRMT
RTRPAAPRVTPPPVPATPATLAPFAATQPLRLNPYEGFYTDGSVQKDALGQPSAWGAAAIDARTLRCYQIDVNPGQHGCN
TITRCELSAIHQVLKLDEVQALPEVTVYTDSAASLFLIRKTINQPQLLTFSKHKALLDNILALLKRRSHAGRRTNLLKVK
AHSGIAHNELADQAAVKTAKGEQIPGAEWLVEESDNDPRSKYYWIRKIIKPTVEGVPREKNEGHYAHDLNRGIATLAAPH
IAQGHTRETLYTGFVANAIPDLDIKSSTRTMNLQSGRHRKAKRCMDYLYGQLWNNKLAARFGRTVTGRRAPRAGPDTPAP
CPLCRGPDSGGHILGGCHNPQLRAMYIKRHNIAVQTIARAISRGDCGGCYMVMDATSKADLPDYAADNRLPPWLLPDQEG
KPAGRHLHYRPDILLIPSISLAAALNPDFVVLPSEHDTIHIIEAGYTADTNHAAKQHEKAQQHQALAADLREAGWKVQYT
PQSAISLGFAGTIRKDLHPLLTSLGVTSHKARQCCDTLHDHAVATLNHIVLTRRRLERGLPPGDPGGT
>RaR2_pol#LINE/R2 1380-4406 [Rhynchosciara americana]
MSNYNETNTSGGDNPRMATQTTGSLSSGPINQHTCELCCRTFGTRAGLGQHVRKTHPIESNQSINVERKKRRWSPEEIRR
MANMEAQATINNIKHLTQYLATYLPQRTLNAIKGRRRDAEYKELVTGIIANLRSNSSTQQTNQVCNESEMSQRSKILQSI
RESVRDLRSRRNKYAKALQELGEAALCGKMLNEEQLIHCIKSMFNTAKCPKGPRFRKTATHSGTNKQQRQQRYARVQKLY
KMNRKVAAKMVLEETDKIQIKLPDHDPMFKFWESEFKEGEGMPERMPKDLKESPDLKAIWDPVTEEEVRKAKVANNTAAG
PDGIQPKSWNRISLKYKTLIYNLLLYYEKVPHKLKVSRTVFIPKKKDGSSDPGEFRPLTICSVVLRGFNKILVQRLVSLY
KYDERQTAYLPIDGVGTNIHVLAAILNDSNTKLSELHVALLDITKAFNRLHHTSIIKSLVGKGFPYGFITFIRRMYTGLQ
TMMQFEGHCKMTQVNRGVYQGDPLSGPIFLLAIEKGLQALDKEVGYDIGDVRVNAGAYADDTDLVAGTRLGLQDNINRFS
STIKQVGLEVNPRKSMTLSLVPSGKEKKMKVETGKPFRANDVPLKELSINDFWRYLGISYTNEGPERLSLTIEQDLERLT
KAPLKPQQRIHMLNAYVIPKYQDKLVLSKTTAKGLKRTDRQIRQYVRRWLKLPHDVPIAYLHAPVKSGGLNIPCLQYWIP
LLRVNRVNKITESQRSVLAAVGKTALLTSTVYKCNQSLATLGGNPTMLAYRTYWEKELYAKVDGKDLQNARDDKASTRWN
GMLHSDISGEDYLNYHKLRTNSVPTKVRTARGRPQKETSCRGGCKSTETLQHVVQQCHRTHGGRTLRHDRIVGLLQHELR
RDYNVLAKQELKTGIGLRKPDLVLIKDDTAHIVDVQVARCSKLNESHVRKRSKYDKKEIEVEVKSRYRVSKVMYEACTIS
YKGIWDKQSVMSMRRLGVSEYCLFKIVTSTLRGTWLCWKRFNMITSVRS
>HERO-1_SP_pol#LINE/R2-Hero 1-3123 [Strongylocentrotus purpuratus]
YSTSLKIDEDLLNYDFLGKHDRRVLQKAERRPSIKWPKMTNISEWTNFDEDAAYNVNMLMHGTVEMKLSTYEKFVHAIAV
QHFGAKDVHIHKEPYLNRRKRRLEELRKQRRDLRKRLRDAPDDQKEGLTVIGDQIHNEVLILTRKERSAKKRRERKRTRS
RFMQDPFKTAKSLLEPVSKSELNCSKDELDRHLQQTYSATSNEEFEPWQDNIPPDLPSEPFDDALPAFQELKNVLHKTRN
ASSPGQNGIPYKMYKKCPRLLKIIWKLMLDVWRTKYIPVQWRVAEGVYIPKSATPNEKTITDFRPIALLNVEAKMFFAIP
AKRLETYMRKNGYLDTTVQKGGVGGHPGVWEHVATLWEVIKDAKTSQKNLVAIWLDLANAFGSVPHAAIAFALKWYHLPE
SLVSLMNNYYVGLYARFSVKDWNSEWQKFSVGIFMGCTLSPILFVITFNLLNDFLKSTPAKQYHLKKRDFNVPVMKEYMD
DITIITASVESAGSILSKVNDFMDWSKMRIKPVKSRSLVVHGGKVKHIEPFAVDGQTIPGVHNKPVKFLGRLIDGNLKDN
VARQDMMVSLGRWLHTIDKCVLTGVMKCWIYQYLIVPRMQWKLMIYDVPVSQVEKMETLVSKKLRRWLGASKNLTNIALY
CHQTKLRLQLEGLTTTMKKTVVNAALQLRHSKDNVVTSIRPQSRHGHKWDAEKAISRAEDSLRMEDIVRGQVGRRGLGAG
QFRKPVRKLTQREVRTEISELVVKEHDNLNFVRAVQMPIQGAWSSWEGVQQKKLSWRNLFDTSPKLLQFMIGSTYDTVAS
PANLKRWGLSEDDACKFCQQKATTTHILAGCPIGLQQGRYTWRHNRVLGIIGDALKTRLSEHNQKPTQTQASFIHFVREG
EATNVSGRRSTGRQRTCLDGASDWNIRIDLGEKLIFPPAIVVTNLRPDVVIWSPTSKRAILLELTVPHGANMQRAHERKS
RKYEELLLEAEQNGWRIELWPIEIGCRGFSNNTLLRALGQIGLGARLRNKIVSLSCSCAVKASFHLWLRKDEREWTRPIS
T
>Utopia-1_AMi_1p#LINE/R2-NeSL 1511..4477[Crocodylidae]
MPPNRRGSRSRPEEPSRREPPXPRACQGLRVWSPPQQRMPTPWQTLWLEELSRATTFKAFEASVARLTEELSAAARPGQP
RGGNNRPATRRDHRLQPQRRPRRQRYDPAAASRIQKLYRANRPKAVREILEGPSAFCQVPRETLFNYFSRVFNPPAEAAA
PRPATVEALTPVPPAEGFEDAFTPQEVEARLKRTRDTAPGRDGIRYSLLKKRDPGCLVLSVLFNRCREFRRTPTTWKRAM
TVLIHKKGDPTDPGNWRPIALCSTVAKLYASCLAARITDWAVTGGAVSRSQKGFMSTEGCYEHNFTLQMALDNARRTRKQ
CAVAWLDISNAFGSVPHRHIFGTLRELGLPDGVIDLVRELYHGCTTTVRATDGETAEIPIRSGVRQGCPLSPIIFNLAME
PLLRAVAGGPGGLDLYGQKLSVLAYADDLVLLAPDATQLQQMLDVTSEAARWMGLRFNVAKCASLHIDGRQKSRVLDSTL
TIQGQAMRHLRDGEAYCHLGTPTGHRAKQTPEETINGIVQDAHKLDSSLLAPWQKIDAVNTFLIPRVAFVLRGSAVPKTP
LKKADAEIRRLLKKWLHLPLRASNEVLHIPYRQGGANVPRMGDLCDIAVVTHAFRLLTCPDXTVSIIAASALEETARKRI
GRQPTRRDLATFLSGSLEGEFSRDGGDFASLWSRARNATRRLGKRIGCAWTWTEERRELGVSLQPAPHADRVTVTPRTRT
FLERFLKDAVRNKYAGDLRAKPDQGKVFDVTSKWDSSNHFMPSGSFTRFADWRFLHRARLNCLPLNGAVRFGHRDKRCRR
CGYVAETLPHVLCSCKPHARAWQLCHNAVQDRLVRAIPAAAGEISVNRTVPGCESQMRPDIVITNEEAKKVVIVDVTIPF
ENRRQAFTDARARKREKYAPLADILRGRGYDVTVDALIVGTLGAWDPSNESVLHACRVSRRYAKLMRCLMVSDTIRWSRD
IYVEHITGHRQYTDPTRRTAAGPDPEGTA
>R2-1a_Cis_pol#LINE/R2-NeSL 980-5347 [Ciona savignyi]
MAGHKITMSEGKLLEVAVRYGGVRNVSYECPVPDCTKTFSQANNLIRHLNNFGNTKHRAHNFTYFFTCEKCKIQIHSNTK
HNISNHYKQCCATGGGPSCETGQYFCPACEQAGLGNLESALRHFQSSHPEFNLPPRSQFSKSHPNSYTLSLKPKDHLMKI
LYSGPLTPGQLVCPIKICLRSSAARLFHDVSKLRKHMLVDHNRTLVYETTCGKCLRPVDTSKNMRKTTSHFEKCSGESFI
SSPSPIPQKTYKLDLPSTSTPPPRKSPKLQPYKPIRTFKNPLTKSSQSKSDNPPKPTPFFSPRTLERSASWPALSEVVDP
LPKLKEKHPSLPCALDKCPPSPRIKPSTLVPPCHTANNSPKPTSPESPSTLKPLPRPIRPSKPLEDWLTVRSVGPDREIV
LNIGPRPRPGPAAGSRTTSPPSTAPAKRVAANPIAAPLSGEPGATLDCGQTGRKVQPPKKRPTESAGSLPPPAEPATDLL
TGREGLARLVEEYHLSGDFGAFCRDLERWTALSSTNRRPKPRRGRYNRGAAARATRNRGRDDRQDPQDRDDQGGPGPVTC
GRPQRYKRAAALRSAFGRDMKATVRRIIDGERGDARCEIDPKTIEGRFRDELSPPVREGPECSLPPWMAEAQAGEHAPSN
DSQPGDAYDGPITALEVEMVLSTLNVGSAPGSDGLSYGFWRALDPKGLVLSELFEVCRIERRVPGPWKSSRVTLICKDAE
GDLDDLGNWRPISICQTVYKIYAAVLARRLQSWALDGGVISRSQKGFMPFEGVYEHVFLLDSVVADARATRRSLAVCWLD
LRNAFGSVDHTTIVEALSRFGAPAGLVEMISDIYTGGSCRIRTRAGFTPDIPVGRGVRQGCPLSGIIFNLVMEVLLRGVE
ANNACGYRLSCAGGASVRVLAYADDVALVGSSRAEXKIQLGVCERFAAWAGFSFNNKKCAAMVLKHQRGGRRLLDSAPLR
LCGEEVAILGPDSFYKYLGAHTGYGRQTGGQLVDRVERQVVRLFTSFLTPTQKLSALKRIVLPAMSFHLRVRPCAEGHLR
RLDNTVRRCVKTALRLPKGSCRAFFHTSPDAGGLGITSVVAECDILTVTQAFKMLSSPDHLVSLVAKGRLGMHAARMGRS
ETASACAMADYLSGDSVMGHXSWKTGYRMPADLWTATRAASRRLSLRFSPQPQGEFGLESGTFKIAPRERRSLTRRLHHR
QNLWWRNQWAALPNQGKTVAAHSAYAASNNWVKGPSSLAPQALFFGLKARLNQMPTRSVKACYSRAPNYDKSCRRCGAEV
ETLPHVLNHCPKSMKSILERHDSVLAEVLAAIPRGTFASVDVDRTSREHFRRVGEALRPDIVARRHDGSVVVADVTCPFE
SCASALDTAAARKIEKYDQLCANLRQLYRKPVESHALVVGSLGSWGRTNNTALAALGIRGAVRSRLAKQLVNLSVEGSHN
IWLRWSGGIPKDLVR
>R2Ci-A_pol#LINE/R2 gi|34392523|dbj|BAC82589.1| reverse transcriptase (partially identical to CiR2 in RepBase; latter seems chimaera of several elements) [Ciona intestinalis]
MPGCQSVVGSECSQCGRVFKTARGLSVHRRSKHPEAYHREHIAAPRVKARWSEEEMILMAQXEVQAPAGTRFINQYLHAL
FPSRSLDAIKGARGKSAAYKKIILEQRLAALVPVSPPNQISGAESPSQPSNTSQEVRQDPEERSLRLRDAIDLGHLRTDF
DMTAVNPGHPDPVIREEIDREFLRWLEPNRRRRGYAKATRIALNAPGKVRRRAEYAAMQRQWKTKRGLCAREALEGTWKI
PARTVSLSDQEAFWRPLMESQSKNDLREPAKVGETLWGLLDPITPDEVRQILGSMSSKAPGPDGHRLSDLRSIPIDQICS
HFNLWLLAGYQPKALRMGESCLIPKVKDASRPQQFRPITLGSYVGRCLHKCLASRFERDLPISIRQKAFRCMDGVAENVM
ILRSVLDDHKKRLAELNLVFLDVSKAFDSVSHRSILHAVKRLGVPPPLLKYVEELYADSETFLRGSGELSPSIKVRRGVK
QGEPLSPHLFNAVIDWALSSLDQSFGVTVGEARVNHLAFADDIVLLSSSQPGLQRLIDQLTTHLGESGLRVNSTKSASIR
IAVDGKNKRWVVDPRDSVHVGGVRIPAVAVSGSYRYLGVNISAAGMRVDAADSLASKLANLSRAPLKPQQRLYILCTHLL
PSIYHQLVLSSTSKKFLKYLDRCVRVAVRRWLRLPKDTPKAYFHAKCNDGGLGVPELQRVIPLQKAGRWLKMTRSQDPVV
QAAVGLEYFQKLLERWSTPELYQWGGGGITTSGHLAVAQARSLYSSVNGRGLRQSGLVSTQFDWVRSGCSLLSGRNFIGA
MQLRGNLLATKLRASRGRPRVDISCDCCRTPESSGHILQVCPRTSWGARIGRHDNVAKLVARESAKRHWKVIREPAIPTP
AGIRRPDLVFSKGDTAIVVDVTIVPDNAELSDAHSSKVSYYDNGAIRGWVALNTGASHITFSSVNNNWSDCMAEESKRML
KLGLGLPNSIRGTISAVVLEKGFHMYLCFKRGTFRASY
>R2-1_Gav_pol#LINE/R2 291-3956 R2-1_Crp_pol and R2-1_AMi_pol close with numerous errors.[Crocodylidae]
PAAPRAWGAVEAGPWPGRTRAVEPAPSPESSPSEAARAAPAGEGHGPGHESPSVQRPEADTTAPGVSAPTREGEPPSTRV
FLVRLPDSNPPCPICRDHVGKPSALALHCVESHAWADVQYQCTHCKKVSANKHSILCHIPCCQGRVPEWTGKDWACPECP
ASFNKKVGLSQHKRHVHPVTRNVERVAGSLSRAGLRPQTRRGCWSVEEEETLTCLDAMFRGARNINQLIAAEMVTKMPKQ
ISDKRRQLGLCPEQTTLGGDAESTSVVEEESMTPEMETQSPINPPGKIRKILAQRARRWLKKGQGLSDKVREVLGAWVEG
QPRIHAWVDSVSLDVLTLFLGVPSGPQRAPNKKRPKEGGKPTSWMNKCAVKWGTFLRYQHLFGANRKLLVAIVLDGADRN
QCTLLLEEVFQAYREKWGLEEVLRAYRGKWEVESSFEGLGRFGVRRDADNFAFKALITPEEVVKHMMAMASKSAPGPDKL
TLRDLRRADPEGDALAELFSLWLITGTVPDGLKECRSVLIPKTVDREKLGQLGNWRPITIGSIVLRLFSRVLTARLAAAC
PINPRQRGFIAAPGCAENLKVLELLLRKRKRDRQPLGVVFVDLARAFDSVSHDHISWVLKAKGVDEHIVNLIEDSYQKVT
TRVQVFNGVTPPISIKTGVKQGDPMSPLLFNIAMDPLIAKLETDGQGVKVGSASLTTLAFADDLVLLSDSWEGMLKNISI
LEDFCNLTGLRVQPKKCQGFFLNPTCDSFTVNNCEAWKIAGREITMLGPGESTRYLGLNVGPWVGIDKPDLGTQLSSWLE
RIGTAPLKPMQKLSLLVQYAIPRLNYQADYAGIGRVALEALDSMNRRKVKEWFHLPACTSDGLLHSRHRDGGLGLPRLAK
AIPEAQVRRLIRVATSSDEVTRKVSYACGISDEVERLWLARGGDMSSVPRFEDPEAPRSPGVQGPCEAAQEIPSVVRKLA
IPRPSNWRSKKHSKWAQLSCQGEGMELFCNDPVSNGWNNSRGQLAEHLQIVALKLRSNIYPTREFLGRSQASTNVGCRHC
THPHETLGHILGICPAVQEARIIRHNKLCKILAAEGKKCEWTVYYELQLLNAAGELCKPDLIFVRDGTXLVVNVTVGYEG
GPAXLLSTAAEKATKYLDXNAQIQELTGAEQVTYFGFPIGARGKWHADNXRVLSELGLSNSRKERVARLLXWRALLGSVD
MVNIFASKHRQENLSDXALSPS
>LIN5_SM_pol#LINE/R2 2930-6244 [Schmidtea mediterranea]
WSQHLVKAYIFSHAIKSSTIFINPYTCNALIQCNYKIFFETFPFKDFARWNEIILPIHNNSSSWSFFFLNKKKRIALIID
PSADDSHTMHLELATDILKTILNVQNIFGDLHFSLTEMEYPICHEANLSAFYVCHFLKCLMSDIPIDIPDINTMKEAMRP
IIRKYNCAKFPESDVRSYRILIEDLIYQLNLDTISCEELLNEIERINGRINPKRYFKDNKPKSDIIHLQKKKAAELLCVK
RLKFQINQKIEIGKIWENNEIDHKPAMAKFLKTFASKDCPMSNTSPIKLPFYRDVDSDTYTDCENLSHIMKNLDSSAPGM
DLITGGDWKKISPKHELITAICNCVLRNKISPQRWKLYRTVMILKPGKLSESFKANSWRPLAIMDTAYRIFTTLINNRLL
HWIRSGTLISQNQKAIGVPDGCAEHNATLHIAIDRAKRCKTELHIVWLDITDAFGSLPHDLIWYTLAGMGLKNETLTLIK
ELYKDVRTMFDCQGTMSEPVPITKGVKQGCPLSMTLFCLSIDYILKSILDNHPFLLHNLNISILAYADDLVLLSDSYQGI
RKTLENTVKLAGFANLKFKPSKSGYLSINSAGSVNKKLHLYDEEIPTISENNKYRYLGVDFSYKRNQDIDGRLDSALALT
RSLFMSYLHPSQKLNAYKTFIHSKLIFSLRNCIIGHRILDCDRNRITQGREKQLGFDQKIKGLLKTMIGDKFQALNNYFL
YTHCKMGGLGITATIDEYLIQSITGITRLFHSSNLGFRDMLIAELAHSRGSKNFEAGLKWMNCEISKEFHNTSFFVKFQK
SALALKRKFSICISLKFAEDKFSLEMIYKKRTSYIDHRNLNTLSKELHDFVGLHYAEQWYKMKVQGRIAASIGDSITAKY
LIASDTLNDAQYCFLVRARNNILNLNYSAYRLKYNLNTKCRLCHLDEETQTHVFNHCRAKPNARRVKHENVLVSIVAFLE
KIGFEIDVEKSPKYVSIPTKLKPDMVIRSKRNKDIHVLDLKVPYDSVEGFEKAREDNYVKYKDLSLQIGKAFNQTATISA
IVIGCLGTWDKKNNAPLSKIGLTKTEIISLARIACPNAVIACYHIYREHVSFTKNVIPLPFSLV
>R2_DPe_pol#LINE/R2 214-3330 R2_DPs_polnear-identical, R2_DA_pol 83% identical and fragmentary. [Drosophila persimilis]
MQNTTPRIINTNSLTNQIPTVSSLGAQSEHSAQVNPNSGYQCTICESSFRSKSGLGVHMSRRHKDEFDQLRLRTDRKAQW
SEEELSMMARKEIELAANGERYLNKKLAEVFTNRSVDAIKKCRQRERYKTKIEQLKGQAVPLPEALESETIQRRPSIRER
DLLVTPPNTLGTTPTELSNSEILAVLQGYPPVVCNDQWRVEVLQSIVDGAQASGKEITLQRLSTYLMEVFPSQNDRPIQT
RPPRRPRNRRQGRRQQYALTQRNWDKHKGRCIKAILDGTEGTATMPSQGIMGSYWRQVMTQTSPTYSGTNTTFRTEHPLE
GVWSPITLGDLRVHRVSLTKSPGPDGITPRTVRSIPSGVMLRIMNLILWCGKLPVSIRQARTIFIPKVGNASRPQDFRPI
TVQSVMVRILNAILASRLTSSVDWDPRQRGFLPTDGCADNTTIVDLILRDHHKRCKSLYIATLDISKAFDSVSHAAVSAT
LTAYGAPKEFVDYVQNSYEVCGTTLNGDGWRSEEFIPARGVRQGDPLSPIIFNLIIDQLLRSYPNEIGATIGDHTTNAAA
FADDIVLFAETRLGLQTMLDTTVDFLSSVGLTLNSDKCFTVGIKGQPKQKCTVVIPETFRIGSRSCPALKRTDEWKYLGI
TFTAQGRTRYSPADDLGPKLLRLTRSPLKPQQKLFALRTVLIPQLYHKLTLGSVMIGVLRKCDILVRSTVRKWLGLPLDV
STAFFHAPHTYGGLGIPSVRWVAPMLRMKRLSNIKWAHLAQSEAASSFLTDELNKARGRTLAGLNELTSRTEIETYWANR
LYMSVDGRGLREAGLFRPQHGWVCQPTRLLTGQDYRNSIKLRINALPSRSRTTRGRNELERQCRAGCDAPETTNHILQNC
YRTHGRRVARHNCVVNNLKRILEEKGHTVHVEPSLQLETSVSKPDLVCIRDNHACVIDAQIITDGLFLDDVHHRKVEKYK
RPEVISALRREFGVSGNVEVLSATLNWRGIWSNQSVRRLIAKGLISSGDSNVISARVVTGGLYCFRQFMYLAGYTRDWT
>R2B_TM_pol#LINE/R2 1-1467 (fragment). [Tenebrio molitor]
AFADDLVLLADSAKDANRLLSEASQFFADRGLELNVAKCCALSTGVVPSKKKCSARLRSYSRLNGAHIRQVAIGDVFKYL
GNHFAFDGVSDISLEELNSQINNLMKAPLNSQINNLMKAPLKPWQKFKILRQTSDTIGWIHCLQSPSVSNKVLREADRKI
KRAVKSILHLPVTIADSSIYASQRDGGLGVFCFSRKIPVILRSRWESLQEMADPALGAVLLQSERCMDRVSRLIKEDWRS
DSEIKNSFRRSLENSWCGGGIHQVGIIKLASKYLLHPPAFWTGRDYVSTIQLRLNALPSRGLPSNPPDQRMCRTGCGRSE
SLSHILQRCGFVQGHRISRHNHVARKIRRLAESKGWEVREEPTIRTNEQVFKPDLLLIRDNELIVCDVSINWEGPSHFPH
TIRINLISMPLQVLSNGCNNDFPRQTVRFLPFILGARGSWCGDNRSLVDALELTQRNIEDLILTCLTGSLIIYKSFMKSV
WRRTVAGD
>R2_SC_pol#LINE/R2 gi|422414|pir||G44490 retrovirus-related reverse transcriptase homolog - fungus gnat retrotransposon (fragment) [Sciara coprophila]
TLWDPVSLIEIKSARASNEKGAGPDGVTPRSWNALDDRYKRLLYNIFVFYGRVPSPIKGSRTVFTPKIEGGPDPGVFRPL
SICSVILREFNKILARRFVSCYTYDERQTAYLPIDGVCINVSMLTAIIAEAKRLRKELHIAILDLVKAFNSVYHSALIDA
ITEAGCPPGVVDYIADMYNNVITEMQFEGKCELASILAGVYQGDPLSGPLFTLAYEKALRALNNEGRFDIADVRVNASAY
SDDGLLLAMTVIGLQHNLDKFGETLAKIGLRINSRKSKTVSLVPSGREKKMKIVSNRRLLLKASELKPLTISDLWKYLGV
VYTTSGPEVAKVSMDDDLSKLTKGPLKPQQRIHLLKTFVIPKHLNRLVLSRTTATGLCKMDLLIRKYVRRWLRLPGDVPV
AFLYAPVKAGGKGIPCLKQWIPLMRFLRLNKAKRTGGDRIAAVLNCQLYASISHSCKTGPVSVGLWRSTNTGGLSAYWRR
ILIGWVDGKDLKSAQNHSSATSFNSIRMNDISGEDYIHYNQLRTNSIPTRKRTARGRPNKPTACRAGCDKLKRLQHDIQG
CIRSQGGLVQRHDRVVDLLFDECETKGYAAEKVVHLRTSEELWKPDLVLKKNGRVVVVDAQVVQCGRLESDHRVKVSKYR
DDPELADVIREKYAVQEVTFEACTLSYKGIWSKNSVEGLQKLGISNYCLFKIVTSVLRGSWLNWVRFNNVTTVVHW
>AF221986_Cpa#LINE/Rex-Babar Genomic sequence AF221986 14350-17121 via tfasty with CR1-5_SP, 2 frameshifts and 7 stopcodons. (a sea-anemone) [Calliactis parasitica]
TTNDKERSGKAFVPSILLSNVMSLAPKVDEVRHYAAYANLDLVCITETWLHGHIHDNIVAISGFNLIRQDRKEGVHGGVC
MFIKDTIQYSLLDDLTDFSFEVLWVKIRPNRLPRGFSNVIVGTVYHPPSSDNSAILNYLMNCLSSIESRYPNCGIILLGD
FNKLNVARLKSSFNLKQIVSFPTRGRNTLDLILTNLHDFYDVPEKRPPFGLSDHLSIEVKPKPRFKAKSRDLRPSNRLAV
SSYLQEVDVPALISTGNSCSEKLSIFETIVNTGLDNILPVRSKAIHSNEPPWINPVLKDLIRQRQRALDNDNLPLFRLLR
NRVNRERKSCRGKYYEEKVSHLKECKPSMWWKEVKKLXGISSXSRGPDDFXKSLRHIDGXSNKQDLANIINEXFILPMSD
FSPLPTDFQLDWPDGALSTSFLVCXHSVYKKLSALNPTKAQGPDGIPAWLLKENXDILIEPVMEILNSSYREGRLPPSWK
EADIVPVPKQKPVKDMRxIPPKRRAQMAFPLGYxRRTRILxWNLLWTSxTARIVRAAYHHPGKKLIxFPSRNRSQxKSQQ
TLTFLSHQYYPRSHALISMIHTWTKHTDGNGTTVRVVLFDYRKAFDLIDHTILASKLESLDLLHGIVXWIIDFLKCRKQR
VKLEHDCKSEWKDIPAGVPQGTKLGPWLFVLMIDDIGVTNTDLWKYVDDTTIAEPVLKNETSNIQNAVSELNTKSHHNKF
xLNEAKCKELRISFANCAPDLAPVIVNEKPIEVVSNVKLLGLNISDDLKWNIHISQIIRKVSTRLYFLKQLKRANVLTKE
LLTFYVTCIRPITEYACPVLNNGLPQYLSDDLERLQKRALRIIYPFATYPEALAVSNLTPLYDRRNTLTVNLFNEISSDV
THKLHNLLPKLNTCXVNLRSKRSFNVPICKTNRLKNSFIYSNSN
>RTE-1_BM_pol#LINE/RTE-BovB 3-2086 via tfasty with BovB_VA_pol, 1 frameshift. [Bombyx mori]
AQRRIEVTDRAKFTAAFERKWTEWTDVNHNEATPEMLWSKAKHLIQNAVIESKPISEMRKRQHWMTDEYLALIEERRRKK
AQGIDTNKLNVLSANIQASCRRDHNSHLRNICEEVEKHATKHESRDLYHKIRFITKSLPSKTWAIVNDKNELITELDQIS
ETWKSYCQSLFQDPQSRQFTSTDPNDEDLEPSILLSEVRAAIKHLKNGKATGRDAIPIETIKALGERGDDMFHKICNRVW
QTGVWPSEWAHTVFTPLHKKGSTKKCNNYRLIALTSHSSKIMLRILNERLKTYLSKEIAPEQAGFVRGKGTREQIFIVRQ
IIEKAREFNRPTYICFVDFSKAFDSVKWPVLWKTLLDLGTPKHLVHLLRRLYENGTASVRADDVLSGNFHPSAGVRQGCI
VSPLLFNAYTEIIMRITLENWTDGVAIGGYRIANLRYADDTTLFATDAQCLGELLSRMERVSLEFGLRINRSKTKVMIVD
RAMNNSPDVTQIAGCDVVQSYIYLGALISNNGGCVDEIRRRMAVTRSAMDGLRKVWRNRNITKTTKIRLVRTLIFSIFLY
AAETWTVRDVERKKIDALEMWCWRRMLGVSWTDFRTNVSILQELGIKQRLFGIVQSRMVNFFGHVSRRDGRSIERLVVQG
SVDGTRPRGRPPMRWTDQIKTAVGGPLNECSRMASSRERWRDIVRRIKSAPSNTT
>REX3_XM_pol#LINE/RTE-BovB  5-2167 via tfasty with Expander_pol, 2 frameshifts and 2 stopcodons.  [Xiphophorus maculatus]
LGRSLMIDFVIVSSYLRPYVLDTRVKRGAELSTDHYLVVSWLRWWGRMESEWTVFRASIVEAADWSCGRKVVSACRSGNP
RTHxxTSSVRDAVRLKKESYRVFLACGTPEAADGYQWAKWHATRVVAEAKTRAWEEFGEAMEKDFRTASRRFWSAIRCLR
GGKQYGTNTVYSADGVLLTSTQDIVGQWAEYFEDLLNPTNMPSIEEAEPGDSGLGSPISGDEVAEVVKKFLGGKAPGVDE
IRPEFLKALDVVGLCWLTRLCNIAWTSMAVPLDWQTGVVVPLFKKGDWRVCSNYRGVTLLSLPGKVYSGVLERRVRRIVE
PRIQEEQCGFCPGRGTLDQLYTLGRVLEGAWEFAQPVYMCFVDLEKAFDRVPRGALWGVLREYGVPGTLIRSVRSLYDRC
QRLVRIAGNKSGSFPVRIGLRQGCPLSPILFITFMDRISRRSQGVEGIRFGGIRLSSLLFADDVILLASSGHDLQLSLEW
FAAECEAAGMRIRASKSEATVLSRKRVECLLRVRGGVLPQVEEFKYLGILFTNGGRRELEIDKRIGAASAVKWALYQSVV
VKRKLSQKAKLSIYWSIYVPTLIYGHELWVVTERTRSRIQAAEMGFLRRVSGLSLRDRVRSSVIREGLRVEPLLLHFERS
QLRWLGHLVRMSPGRLLVEMFRACPIGRRPRERPRTGWRDYVSRLAWEHLGIPPEELEEVAGSREVWASHLKLLPPRPDP
G
>RTE-1_CQ_pol#LINE/RTE-BovB 25-3042  [Culex quinquefasciatus]
MEPESGLRATETARRKTDWRNGTTLGMKTRTRIGTWNVLTLAQAGKLETLGREAVRLKLEILGLSEVRWPDSAEHKMPTG
QVLLYSGLRSENAQRGFLLSPNARSALITWKPINERIIVARFRTRVRNLTFVQVYAPTDAADLQEKEEFYSQLSXVVNEI
PKGDIRIYAGDFNAKIGSDNTDLERIMGPHGXGEMSENGELFTEFCGNQDMVIGGSLFPHRSVHKVTWVSRDGKTENQID
HICISRKWRRSLLDVRNMRSADIASDHHLVVGEIRLRVARVVRQEEKVGCRFNVQRLSNPEVXRAFVGELQARALEIPDS
TVEEEWQFIKDAFAVTGENTLGMLRTQRKEWISDATWDKIEERKQAKAAIVSARTRATKARTRQTYAELEKAVKRSCRRD
KRAWTDSLADEGEKAANNGDMRLLYDISRRLCGARTNTRIPVKDRSGQLITDPADQLKRWFEHFEQLLQISHPRPSPQYH
PQNVRRINRVNSSPPTLREIEEAVKGMKSGKAPGIDRISAEMLKADAHLSARMLHRLFSKIWDTATFPVDWMQGILVKVP
KKGDLTNCDNWRGITLLCIALKVLCKVILCRIKSKIDESLRRQQAGFRSGRSCVDHIVTLRVILEQVNEFQDSLHLVFVD
YEKAFDRLDHENLWEALGRKGVPERIINLIKAQYEAFVCRVVHNGVLSDPIRVVAGVRQGCILSPLLFLIVIDEVLAGAL
DRVQNRGLLWQPIRMEHLNDLDFADDIVLFSQRGNDMQNKLDDLAACSSAAGLKVNVSKTKSMAVNTERAQGFTVAGENV
EKVDTFQYLGSQIAPDGGTKLDISTRIKKARSAFAGLRTLWRSNQISLRTKLRIFNSNVKSVLLYGSETWCVSSQNTSKL
QVFVNRCLRNILRAWWPRNWVSNAELHRRCQQRPIHVEIRERKWRWIGHTLRKDAHEICREALDWNPQGQRGRGRPRGSW
RRSLHQEISAVDGTLSWRQVKAKAENRQQWKSFNAALCSTGEQXA
>RTE-1_HMe_pol#LINE/RTE-BovB 616-3636  [Heliconius melpomene melpomene]
MEAHLKRSRSPYEPFSNRRRTASGACGEKLVTGHEAVGNQALRGNSDTGITMKLRTNQKIGTWNVRGLLDPGKLTILERE
ITRNGMNICGLSETHWQNSGHIFTDSHVVYFSGNESTSRNGVAFLISKHQNNCVIGYEPVSDRIISLKLRATPVNLNLIQ
VYAPTSTSSDEVIEDFYTAIETTIAKIPNRELLLILGDFNAKIGAKSGHLGDCVGNFGLGKRNERGERLIQFASENNFTI
ANSCFQHHHRRLYTWTSPDGKQRNQIDYILIRRRWRTSVQNTHTLPGADCGSDHQLLMSKLRVKLRAARIKKAQKRLEVL
DTPKFLKSVQNNWEKWTTAEHREETINTLWDQAKQLISNAVEDSNPPVTKHKRQHWMTDVTLSLIDERREKKATGCDVKD
LNRLSSQIQAQCRRDHNTYLNSICNEIESHAAKYESKDLYRKIRFITKSLSPKSWAIEDNDGKIVTELDKISELWKTYCQ
XLFQDQQSRNFSPTEPHKGELEPDILLSEVKAAIKHLKDKKAAGRDGIPIETIKALGEYGTRIFHTICNKIWQTGVWPTE
WTHTVLTPLHKKGSTKKCGNYRLIALISHASKILLHILNERLKSYLSREIAPEQAGFVKGKGTREQILIVRQVVEKAREF
NKPVYICFVDFSKAFDSVKWPVLWNTLLQMGTPKXLVHLLRQLYEGGTASVRTDGILSSNFHPSVGVRQGCIISPLLFNA
YTELIMRITLENWTDGIAVGGYNIANLRYADDTTLFASSIQHMEELLQKMEYVSLQFGLKVNRSKTKMMIVDRANNNSPE
VTHIANCEVVQSYIYLGTLITNKGGCMEEIKRRMAIARNAVERLRNIWKNRKITKNTKMRLIRILVFPIFLYAAETWTVR
EAEKKKIDAMEMWCWRKMLGISWTEFRSNVSILQELGIKERLSALVETRMLKFFGHISRKGNDSIERLVVQGRVNGTRPR
GRSPMRWTDQVKSAVGGKLHECTRMATNGRKWRETVARITKAKNVTT
>RTE-1_DBi_pol#LINE/RTE-BovB 221-2926 via tfasty with JAM1_pol, 2 frameshifts and 1 stopcodon. [Drosophila biarmipes]
RKKRSPVKTKAKASERIPPYDDDHRKTKKDYDLRICTWNVRTLNWEGASIQLADALEKLKADITAIQEMRWTGKVGRERI
FDPTVGRFSLHETTSNNGLRLIDFAAARNMVVSSTRFRHLDIHKATWLSPDQKTRNQIDHVVIDGRHASSVMDVRTFRFx
GVNIDSDHYLVAAKIRMRLCRAKNIRPITQRKLDVTRLRSQRTAIAYSTHLSELLHQPIPLPVDAGGLWAHISHSMRAAA
ETTIGFKRPPTRNQWYDEECRVAAAAKNAAHRKTLQSGATRATCERYREKRKEERRLFRRKKREQESECEELEVLQDRND
VRKFYQQVNRLTQGFKTGASNCRDENGNLVTDTQCTLRLWREHFSKLLAGDDGTNPAIGGSSPIPPIDDNVDIPLPNHDE
VRVAITRLKNNKAAGADGLPAELFKAGGEELIRCMHQLLCKIWLEESMPNDWNLSVLCPVLKKGDPTICANYRGISLITI
SYKVLSSVICERLKPYTSTLIGPYQCGFRPGKSTIDQIFTLRQILEKTHENNIDTHHLFVDYKAAFDSPTRERLYATMSE
FGIPAKLIRLCRMTLSSTISSVKVGTNLSEPFNTVRGFRQGDPLSCDLFNFVMEGVLRKAGVHRSGTIFYKSVQLLAYAD
DIDIIGRSKRDVTAAFSAIEKESAKVGLAVNEGKTKYMLSTSREARRLDSHVVADSYTFEVVKEFTYLGTAINTENDVSL
EIKRRITLANRCYFGLSKQMCNRDLSRRTKLTLYKTLILPVLLYGAEAWVISQTDAAALAVFERKILRKIFGPVRIGDDF
RIRMNHELYELYDDVDVVRRITIQRLRWLGHVVRMDEESPAQKVFEARVDYGRRRRGRPKLRWKDQVEENLTALGISDWR
RRARSRGAWRETLRSAKTRIGL
>ORTE-6_AAe#LINE/RTE-BovB 247-4797 [Aedes aegypti]
MIKVGGGEVLNENVNELKQIIFXYIKLNWENFVYELILSXRIXISKEETLMYEQYEWSIKGGKQVFGYEVLWAVAEIFEC
TVNIFFEAGGKIIYGSKYRENHISLDFVINNEGKIENIIDTDEHMRFVYTSNKQGQNVRSEVEREIGKLKEXQGSRAYTF
EIATRDEILEVKQIGHDDVSLMRALEVQLNAEQDGXSEKVREELDELFRGSKIQGEDFNQVENILARLGVVASNLNKEII
IYREKKXEIVLGVTERKSKMKECKLLLTEREGKIHIDIISKCSEVTRIDWNNVVEDLALDTXVRKPREEIYQFEHPQKEG
KMEVKIIQGDGNCMLRSLLDQLGRRYGRYLLSXHNVYKLRKFMVDYIQQAREQFEGFMFDYKQPEEDFEIGISNMRKNKT
WLGHEALLALTEILKIAIIVYGKDGAINTIGENYSSNGSLQIFYTGVDVQNHYDSIITKNDEIAGNTRHTQRFHNENDKS
YDLNDVAVKIDQMAEMREQVNPNHGTDNSEKEQASNRRKTENSHLPTSQVTNANNTNNTDVKGHNTRKVSNKFIRIASWN
VKGCRSKEKREEIDETLTAYNVDIAALQEVNTLGDEVNTKNYVWKVADNHVNKSRGLAIVIRNNTNITIQNMKQVRQGIL
WCKIKAKDNVFIIINIHAPNVKQAAFLSKLNEITANEKDRKHLLVVGDFNAQLGINDMNQEDEKWIGKMIGHDKCNDNGE
TFKIFLHTAKLKNVSSKIGMGTEITWRSGSRCSQIDHILSPTMTDFKIKYIRGNWTHLNTDHKLITIGIKFEKIVRNTNE
RNEPTKINLELLKDNKIKEEYQEQLKLNKSQKEIEENTIEECYKELSSRMKRAANKTIRSSTIPSTPKRRKAFDRLKDAI
RISKKHPDMINYKYKLKNRRQEFTQAVKDHKEKEIKHFFKNLNDFDVGQRIRKTHNYLKRYVKQKQKRIVNISTRVWDQM
LRESEGPTIEFCDTHDYTPMIQPPTSEEIMDIIRNSSNGKAAGPDLIFTEYIKNADKETQDYLVKVIQKAYIENIYPSDW
LKSTQIPIPKKVKATEAEHFRRISLCSVVYKVYAKWIANQITKYAGQPDLYQAAFTNNRSTDDHIFVTRRVMEENWNAGK
DLYILALDIRKAFDTIKVHNIKDILLGLNVPTTLVDRVIACMKDEMTRVLWNGQFSEEIKRGKGIKQGCPLSPILFNYIM
QDVIRKVASKIPELKLMDVNSLIIPLLLAFADDLLIIADSKEQLEKIVKELVKQLEEVGLELNYDKCQLLLRFPNYKGQM
PNEIMLNGRPYKVCDSIKYLGVCLTATLDRKATNRQRCVNAYRTGRSVIEFCKSFKPSWELGKLIYKTVLAPAITYGTKV
AVLTKKSRIGMANYEKLILRSIYNHCRRPQNIRFNARKLLDGKTINRRVRVGRISYYGHILRREKNHPIRLAYRLNFKKK
KEGRPSFTWKDSLEKDLNRYSEVDREEWKQLAEDRDKLKKKAEEIYKETFSEISEGESSEEEGRSKKYKHWKRKMKR
>CR1-20_DR_pol#LINE/Rex-Babar 12-3079 via tfasty with Rex1_FurC_pol, 4 frameshifts and 2 stopcodons [Danio rerio]
MMAPYLWQPVAAALDVFNFVYLLYFLNIFLQWLRTLYLHTFQFESIRKHWIIFIFILAFLIGKSDAVNSPANADAVIYSR
EQLLALRHTSTFSVPTMEVPTELKRRRRGCRAGVKRRLKKKRYKPSLPVIIMGNVRSLGNKTEELTALVRTQREYRECSF
MCFTETWLNDKTPDSVVALDRFHLVRADRCAKQTGKNKGGGLALFVNERWCRPAHITTKEVVCNKDIELLAVGMRPYYLP
REFSYVIAITVYIPPSANASNACEHINTVTASIQLKYPHSLIVISGDFNHVSLQSSLHTFTQYVDCGTRDCKTLDMLYAN
VKDAYASTPLPPLGRSDHNLIYIRSVYVPAVRKQPPTIRTVQVWSDSVYEALMDCFDSTDWEVLCKSHDEDIDSLTDCIT
DYINFCVENTVPTKKVKCYSNNKPWVTPELKALLNEKKRAFLAGDREEIKRVQKELKIKIKEGKDNYKSKMEHKLQQNNV
RDVWSDLNRMSGSGNSLKRCTASVGKNWVDEINIFFNRFDAAPVCLENSHPSTHQSSFLDSPSVLTSNFSDLxVCTKLEV
TIEQVRNGLRRIKKKKSAGPDGISAGVLKACADQICWVVHYIFNLSLRLERVPILWKTSCVVPVPKKPNPTEFSHYRPIA
LTAQLMKVFERLVLNYIKKLLIASEDRLQFAYKTGVGVDDAIIYLLHKSLSHLETSGNTVRITFFDFSSAFNTIQPALLK
VKLENAGLQKGMVSWLTDYITNRPQYVRMHNCVSQVIMSSTGVPQGTVLAPYLFTFYTSDFQYSSKNCHLQKFSDDSAIV
GYIRNHDESEYRLLLKSFADWCDMNCLNLNTSKTKEIIVDFSRHPSQAVPVIIQESEIEIVSSYRYLGVYLNNKLDWSEN
TIQVYKKGQSRIHLLRRLRSFGVCQTLLKTFYDSVVSSVILYAVTCWGGGLLEKEKNKLNKLIKRAGSVVGGALPTIEEI
AQDRMLDKFVSIMNHDSHPLYDTVQACASSFSTRLIQPRCYRERYRKSFLPTVIRLYNQSHTRx
>CR1-2_FR_pol#LINE/Rex-Babar 2-2821 Fragment, via tfasty with Rex1_FurC_pol, 2 frameshifts. [Takifugu rubripes]
RRRKRGCRAGVERRARRRRYRPVLPSIIMGNVRSLPNKMDELAALTRHQREYRECSLLLFTETWLTALTPDTAAQLDGFT
LLRADRSRESGKRKGGGLAVFVNDRWCNSDHIKEQHCCKDIELLAVSMRPHYLPREFTHALAVVVYIPPSANADAACDVL
LSAVSRLQTQHPDALLLISGDFNHASPSSSLPKFTQYVTCHTRDNKTLDLFYANTKEAYHSLPLPPLGRADHNLVHLQPA
YKPLVQRQPAVTRTVKKWSEEAEEALKDCFNTTLWDVFSDAHGEDIDDLTNCVTDYINFCVENTVPTRTVRSFSNSKPWI
TPDIKALLKEKKRAFVSGDKEELKTVQRELRRKIRQEKDNYRRKMENQLQQNNICGVWKGLKTISGFKEQKSQPVGDRGW
ANDLNLFFNRFDQVPTPPPAQSPLLLPPPLSVPPIHCSSCPPSPSLMNFSSHIPDTSHSGPCPSPPPTPPCSSLSLTPHQ
VRKALKKNRARKATGPDGISSRLLKSCADQLCGIFSHMFNLSLKLGRVPQLWKTSCIVPVPKTPHPKELNSYRPVALTSH
LMKTLERLILAHLRPLVSSFMDPLQFAYQPSIGVDDAVIYLLHTSLTHLEKAGSTVRIMFFDFSSAFNTIQPRLLGDKLQ
VAGVDHHLTTWILDYLTQRPQFVRVKGSESDRLLCSTGVPQGTVLAPFLFTLYTADFSYSTSSCHLQKFSDDSAAVGLIT
DGDDTEYRELIQDFVDWSLRNNLQINAGKTKELVVDFRRRNNPPPAPVNILGTDVDVVESYKYLGVHLNNNLDWTHNTDA
LVKKGNSRLFLLRRLRSFGVQGPLLRTFYDSVVGSAIFYGIVCWSSSITDRDRKRMDRLVRRASSVLGCPLDSVEVVGNG
RMMAKLSSMLNNTSHPLQDTLTALGSSFSERLLHPRCVKERYRRSFLPAAVRLHNKHNAR
>Rex1-21_NV_pol#LINE/Rex-Babar 2-746 Fragment, via tfasty with CR1-13_NV_pol, 1 frameshift. [Nematostella vectensis]
ANWPCRVKYVDNTTIFEIIPRCSPSYLQFIVDELSEFASSRGMRLNPKKCRELTINFLQFKPTELAPLFLNGSQVKQSVD
YKMLGVHISSDLSWNIHVENIIKKANKRLYALRLLRKAGVDSNDLIKIYTSXIRSVLEYAAPAWASLPIYLQDALEGIQK
RALRCIYAEYDLLFQILLCRAGIATLDERRKLLCQTFISKATSSEPLKSVIPSRSAVSHCYTLRSGSVWAIRRSGRTDRF
NNFITNRF
>BovB_VA_pol#LINE/RTE-BovB  178-3204 (1 stopcodon) [Vipera ammodytes]
MDSTKRQYDMTLEDEPLRSEGIQYATGEEQRATTSSPRKNEATGPKPKGHSAVDVSGGERKVRCCKDFFSIGTWNVRSMN
QGKLDVVKQEMTRLNIDILGVSELKWTGMGEFNSDDHQVYYCGQESLRRNGVAFTVNKRVEKAILGYNPQNDRMISVRIQ
GKPFNITVVQVYAPTTSAEEDEIDRFCEALQHLIELTPKNDVLIIMGDWNAKVGSQKITRITGKFGLGVQNEAGHRLIEF
CQENTMVIANTLFQQPKRRLYTWTSPDGQYRNQIDYVLCSQRWRSSIQSVKTRPGADCGSDHELLVAKFRLKLKKVGKST
RPLRYELNHIPVEYTVEVTNRFKELDLIDRVPEELWTEVRNIVxEVATKTIPKKKKCKKAKWLSEEALQIADERREAKGK
GEKEIYAQLNAEFQTIARRDKNAFLNEQCKEIEENNRIGRTRDPFKKIGEMKGTFHAKMGMIKDQNGRDLTEAEEIKKRW
QNYTEELYKNELNVPDNLNEVVTDLEPDILECEVKWALEKLSNNKASGGGNIPAELFKILKDNAVKVLHSICQQIWKTQQ
WPQDWKRSVYIPIPKRGSAKECSNYRTIALISHASKVMLKILQARLQQYVDRELPEVQAGFRRGRGTRDQIANIRWLMEK
AREFQKNIYFCFIDYAKAFDCVDHNKLWQVLKEMGVPDHLICLLRNLYAGQEATVRTGHGTTDWFKIGKGVRQGCILLPC
LFNLYAEHIMRKAGLDESKVGIKIAGRNINNLRYADDTTLMAESEEELKSLLLRVKKESAKLGLKLNIKKTKIMASNPLN
SWQIDGEEMEVVTDFIFLGSKITADGDCSQEIKRRTLLRRKAMANLDSTLKSRDITLSTKVRIVKAMVFPVAMYGSESWT
IKKAERQRIEAFELWCWRRLLRVPWTARRSNRSVLEEINPDCSLEGQILKLKLKYFGHLMRRKDSLEKSLMLGKIEGNKR
MGRQRMRVLDGVTEAVGVSLNGLQKMVEDRKAWRNIVHRVAMGRTRLRS
>Rex1_Xm_pol#LINE/Rex-Babar Translation of AY298859 complement(31588..33414) [Xiphophorus maculatus]
TEINTNESIHTAPSCSNHLPAFSSTPPLLQPPIPPSSPIFTADNNTYPQLTVTTGQDKRQLERLHQGKAAGPDGITTRIL
KTCSGQLSPVVAHMYNLSLRLERVLLRWKTSHVVPVPKKPRPSDPEDYRPVALKSHVMNVMERLVLALLRPQVRTFLDPL
QFAYQPHLGVDDAVIFLLQRALSHLDGGGDTVRITFFDFSSAFNTIQPLLLGEKLRRMGVNDSVISWVTDYLTGRPQFVR
LGSVLSDVVVSDVGAPQGTALSPFLFTLYTTDFQYNSESCHLQKFSDDSAVVGCIGDGGEGEYRTLVDGFVEWSEQNHLR
LNISKTREMVIDFRRKKIPSRPLKVKGEVVEEVEDYKYLGVVIGNRLDWASNTDAVCRKGMSRLYFLRKLRSFNVCSKML
ETFYHSVVAGAIFFAAVCWGSSIRASDSNRLDKIIRKAGSVLGLRLESLETVVERRTLKKVLSVMDNKQPPLHHIVDRQR
STFSHRLLQLRCRRDRYRKSFLKHAISLYNKN
>Castor#LTR/Copia 75-4454 [Arabidopsis thaliana]
MSQVNGLPATRDEAIVLTPQTLFNVNTSNVTKLTSTNYLMWSIQIHALLDGYDLAGYLDNSVVIPPETTTINSVVSANPS
FTLWKRQDKLIFSALIGAISPAVQSLVSRATNSSQIWSTLNNTYAKPSYGHIKQLRQQIQRLTKGTKTIDEYVQSHTTRL
DQLAILGKPMEHEEQVEHILKGLPEEYKTVVDQIEGKDNTPTITEIHERLINHESKLLSDEVPPSSSFPMSANAVQQRNF
NNNCNQNQHKNRYQGNTHNNNTNTNSQPSTYNKSGQRTFKPYLGKCQICSVQGHSARRCPQLQAMQLPASSSAHSPFTPW
QPRANLAIGSPYAANPWLLDSGATHHITSDLNALSLHQPYNGGEYVMIADGTGLTIKQTGSTFLPSQNRDLALHKVLYVP
DIRKNLISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDDLYEWPVTNPPATALFTSPSPKTTLSSWHSRLGHP
SASILNTLLSKFSLPVSVASSNKTSCSDCLINKSHKLPFATSSIHSSSPLEYIFTDVWTSPIISHDNYKYYLVLVDHYTR
YTWLYPLQQKSQVKATFIAFKALVENRFQAKIRTLYSDNGGEFIALRDFLVSNGISHLTSPPHTPEHNGLSERKHRHIVE
TGLTLLTQASVPREYWTYAFATAVYLINRMPTPVLCLQSPFQKLFGSSPNYQRLRVFGCLCFPWLRPYTRNKLEERSKRC
VFLGYSLTQTAYLCLDVDNNRLYTSRHVMFDESTYPFAASIREQSQSSLVTPPESSSSSSPANSGFPCSVLRLQSPPASS
PETPSPPQQQNDSPVSPRQTGSPTPSHHSQVRDSTLSPSPSVSNSEPTAPHENGPEPEAQSNPNSPFIGPLPNPNPETNP
SSSIEQRPVDKSTTTALPPNQTTIAATSNSRSQPPKNNHQMKTRSKNNITKPKTKTSLTVALTQPHLSEPNTVTQALKDK
KWRFAMSDEFDAQQRNHTWDLVPPNPTQHLVGCRWVFKLKYLPNGLIDKYKARLVAKGFNQQYGVDYAETFSPVIKATTI
RVVLDVAVKKNWPLKQLDVNNAFLQGTLTEEVYMAQPPGFVDKDRPSHVCRLRKAIYGLKQAPRAWYMELKQHLLNIGFV
NSLADTSLFIYSHGTTLLYLLVYVDDIIVTGSDHKSVSAVLSSLAERFSIKDPTDLHYFLGIEATRTNTGLHLMQRKYMT
DLLAKHNMLDAKPVATPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAFAVNRLSQFMHQPTSDHWQAAKRV
LRYLAGTTTHGIFLNSSSPIHLHAFSDADWAGDSADYVSTNAYVIYLGRNPISWSSKKQRGVSRSSTESEYRAVANAASE
IRWLCSLLTELHIRLPHGPTIFCDNIGATYICANPVFHSRMKHIALDYHFVRGMIQSRALRVSHVSTNDQLADALTKSLS
RPHFLSARSKIGVRQLPPS
>Barbara_TM_gag#LTR/Copia 312-2172 via tfasty with PREM2_ZM, 1 frameshift. [Triticum monococcum]
MASSEGNYHRRGPYFDGTNFASWKHKMKMHILGHNPAIWAIVCVGLQGDFFDGREPNREATADELKMLQYNAQACDILFN
GLCPEEFNKISRLENAKGIWDTLIDMHEGTDSVKESKLDVLQSQLDKFKMKDGEGVAEMYSRLPLITNEIAGLGSEEMTD
KFIIKKILRALDGKYDTVCTLIQMMPNYKDLKPTEVIGRIVAHEMSLKDKEELHNKSSGAYKASCEAPTSSSEKQDFNEE
LSLMVKNFNKFYKSRSKDRNSKSRSYNDKRSSSREQNCYNCGRPGHYSNECPLPTREEKILQKEEAKDQHQEREGVEMIV
MKRRYSRRSKDSERKEKSSRSYTRRRNQAQVGEWVSGSDSNNHSERSYYSDSKDTQDEGVAGLALVSTNSYDIFDSPNEG
IGRCFMDKGPKVTHPEYVDFNSDEDDLLGDDLLGDHSSDEYYDEMSIKHANQDKTNDNDKEKIEALTKELNTLKLAHETI
FEDHRELLRAHEKLRFEKLNLEQEHEFLKAINDDLRKKSSSYIAKRLLLSTYMPQVKSSNKKDSSSSSNNDHAKSNIVAS
SSSLDSTNDSLSQVTLEQENSLLKGIIEKGVYKSLARSKQFGEIVRKKGMHRKNQGVGFE
>COP6_MT#LTR/Copia via tfasty with Retrofit2, 2 stopcodons. [Medicago truncatula]
MASAANNNKNDLPSSVSVKLDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKSNNPAFEEWQANDQRLL
GWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKSEFHSIRKGEMKMEDYLIKMKNLADKLKLAGNPISN
SDLIIQTLNGLDSEYNPIVVKLSDHTTLSWVDLQAQLLTFESRIEQLNNLTNLNLNATANVANKFDHRDNRFNSNNNWRG
SNFRGWRGGRGRGRSSKAPCQVCGKTNHTAINCFHRFDKNYSRSNYSADSDKQGSHNAFIASQNSVEDYDWYFDSGASNH
VTHQTNKFQDLTEHHGKNSLVVGNGDKLEIVATCSSKLKSLNLDDVLYVPNITKNLLSVSKLAADNNIFVEFDKNCCFVK
EKLTGKVILKGLLKNGLYQLSGTKGNPxAFVSVKESWHRRLGHPNNKVLDKVLKSCNVKVPPSDNFRFCEACQYGKMHLL
PFKSSSSHAQEPLELVHTDVWGPAPIMSSSGFKYYVHFIDDFSRFTWIYPLKLKSETVQAFTQFKNLTENQFNKRIKVIQ
CDGGGEYKPVQKLAIDAGIQFRMSCPYTSQQNGRAERKHRHIAEFGLTLLAQAQMPLHYWWEAFFTAVYLINRLPSQVTQ
NESPYSLIFHKEPDYKLLKPFGCACYPCLKPYNQHKLQFHTTRCVFLGYSNSHKGYKCLNSHGRTFISRHVIFNEDLFPF
HEGFLNTRSPLKTTINNPSTSFPLCSAGNSINDASIPIIEEENQDETNEEDSQGVTSDTEQTDNGSSEGDTTHEETPDIV
QQQNVGESSLDTNTSNAIHTRSKSGIHKPKLPYIGITETYKDTVEPTNVKEALTRTLWKEAMQKEFQALMSNKTWILVPY
QDQENIVDSKxVFKTNYKSDGSIERRKARLVAKGFQQTAGIDYEETFSPVVKASTVRVILSIAVHLNWEVRQLDINNAFL
NGYLKETVFMHQPEGFVDPTKPNHICKLSKAIYGLKQAPRAWFDSLKTALLNWGFQNTKSDPSLFLLKGKDHITFLLIYV
DDIIVTGSSNNFLQAFIKQLNDVFSLKDLGRLHYFLGIEVQRDASGMYLKQSKYIGDLLKKFKMENASPCPTPMITGRHF
TVEGEKLKDPTVFRQAIGGLQYLTHTRPDIAFSVNKLSQYMSSPTTDHWQGIKRILRYLQGTINYCLHIKPSTDLDITGF
SDADWATSIDDRKSMAGQCVFLGETLISWSSRKQKVVSRSSTESEYRALADLAAEIAWIRSLLFELKLPLPRKPILWCDN
LSAKALASNPVLHARSKHIEIDVHYIRDQVLQNKVVVAYVPTTDQIADCLTKPLSHTRFSQLRDKLGVIHSPPV
>Copia1_HV#LTR/Copia 200-4493 Wised via estwise with SC-8 protein + C term extended with ORF [Hordeum vulgare]
MLTDANYDVWTVKMKIILXSLRVWEAITDDDVDEERDEGAMAAIAQSVPDSVLMTLAEFETAREAWNALKEMRIREDRVT
KARAQVLKRQFHKLQMEETESVNDYAMPLTTLVGEIRALGAKLDETEIVQKFFSSVTDKFTYIIGTLEQLYDIDDMTITE
AIRRLPTXEENAPGCKKRKRGRXDQLMYSRTDREDPSNKVKARSXGEGSTNTKGDGQTEKGNXKRKPQGHSKAGQSIRAE
TTEXDSSEVNCYNCNNMAHLANNSPKPNKREIKANLAKQEDEGPGLLMSEVCDLAETVVVKPSRKVLLHEEKVTPKLSGD
QNVSWYLDTGASNHMTGCKEKFLELEFDVEGSVKFGDGSAVEICGQGSVLFAGLTGEHRILTGVYYIPRLRNNIISIGKL
DENGCKVNIESGVMTIFDNLRNVLAHVNRTRNTLYILNLDQSQPEWWLAKSDDDLWLWHARFGHVNFYALEKMSKMQMVS
GMPVIDHVDRICDGCLVGKQHRRPFPAQSTYRASDALKLLHGDLCGPITPATHAGKKYFFLVVDDYSRYMWVILLRSKDE
AFEAFKKLKAATEMEHKLKVRALRTDRGGEFTSNXFNDYYEKIGIKRFLTAPYTPQQNGVVERRNRTVVDMARNLLKSKN
LPGTFWGEAVSTAVYLLNRAPTKAVVGKTPYEAIYGRKPNVSHLRTFGCVAHVKTAEPHLSKLADRSTKMVFIGYESSSG
TKAYRFYDPQTKRLRISRDFVFEENQAWNWSAAADDAPNSNIFAVEFPTDDDAGEDVQVIGXDAQTKVTTMVVIIMVPTP
TTTRIGRKEIATTPRTTQAEISTTTSTTRRIVTTTIKMMVTVTTTTPTTRMSXDTPRSQPSSSSASTPTQFVSPPSQATT
DSSGPRRYKTLKKVYKYTKPVTLEYSGLCLFGVEEXANFIEASKSPSWTHTMDEEMKAIESNGTWTLVTRPPNQKTIGLK
WVYKLKKDTEGAIVKYKARLVAKGYVQRQGVDYDEVFASVARIETVRVLLALAAQEDWKVHHMDVKSAFLNGDLTGEVYV
EQPLGYEKKGEEGKVYKLKKALYGLKQAPRAWNSKLDRSLVSLGFKRCPLEHAVYTKNSKGSNLLVGVYVDDLIITGDSV
QEIERFKAQMKNKFSMSDLGLLSYYLGIEVKQSSGEISLCQSAYAVKLLDKCGMSDCYATQVPMDQRHKLSKRSSNPPVD
TTMYRSVVGSLRYLVHTRPDLAYSVGIVSRFMEKPTTEHMSAVNQILRYVKGTINLGCTYRKGKEGLILRGYSDSDMAGD
VDDRKSTTGMVFYLGPNSISWNSQKQKVVALSSCEAEYIAASTAACQAVWLRRLLAILAKREVQKVSLKIDNQAAISLCK
NSVHHERSKHIDTRFHHIRECIEEGLIEVQHVNTKDQLADIFTKSLGRQKFIEMRGKVGVQEVKSSNKIKEV
>Copia1-PTR#LTR/Copia 6111-9482 [Populus trichocarpa]
MAENFTTSSSPTADVANTNWCLDSGATHHMTTNATSLPDVHPYTGTDTIVVGNGNQLAITHIGNTQLTGLHKSLNLNEVL
YVPAIRKNLISIRRFCCDNDCYFKMDANGFSVKDNKTEKVLLTGSSFDGLYHIQTSPSIARQIACYGKRTTQDVWHARLG
HPSHSVFTTLLNKYNLPLDGAIVSNKNCHICPLGKSCRLPFEDRQSHAQFPLALLHLDLWGPAPISSNFGYRYYFSIVDD
NTRFTWLYPLAKKSDVLTTFVHFKKLVENRFSSHIKQLQVDGGGEFTSKLFLTFLRDHGISHQISCPYTPQQNGVVERKH
RHIVAMGLCLLAQSRLPHSFWVEAFSTAVFLINRLPTPKLDHISPYEKLLQRTPDYAFLKSFGCACFPHMVPYNRHKLSF
KSVPCVFIGYDDHYKGYRCLDPISSRIYISRHVIFDEASFPYPQLQSTSVAQSTPTVHLDIGPDLYSQETNNSTNPTHSA
PIILDSPLVTTSASPQPSPTPPLSPSPIVVVPSPVSQSSHPLQTSSTNPTSVTHTTTPSPMSTPPPSPIDPSLLPNSPAT
PNPPKKFKSLKTIIPFGPEPKPLYSHTTPHPLPQALSAACSDPMSLEPTSFTQASKYSHWQATMQDEYDALMQNHTWSLV
PASSHMNIVGCKWVFKVKRKADGSVDRYKARLVAKGFNQQEGFDYAETFSPVVKPATIRTILSLAVSCNWSLQQLDVRNA
FLNGYLEETVYMKQPPGFHDSSRPQDVCQLHKALYGLKQAPRAWFQRLSAFLLAQGFAHSQSDASLFIHRSSSSTIYVLV
YVDDIIVTGSDLQHIHRFLDQLCSTFDSRRLGELNFFLGMEITRFTDHLFLSQTRYAVDLLKRFNMTDCKPCPTPLPFDT
RLSYLDGDPLSDPSTYRSMVGGLQYLTLSRPDISFAVNQVCQFMHNPRSSHLQVVKRILRYIKGTVEQGLVFHQSDDFTL
RSFSDADWAGSVDDRRSTTGACIFFGPNLLTWTAKKQSTVSRSSTEAEYRALAHTAAEICWFGFLFRELGIPLQTAPCIY
VDNLSAIHMAANPIFHARTRHIEIDYHFVRELVARKSLHTFYVPSSHQLADIFTKGLSRDRFSFLKSKLNLRVAPLRLRG
GKEN
>ATRE1#LTR/Copia 73-4483 1 frameshift in RepBase entry; this protein is GenBank entry BAB84015.1 [Arabidopsis]
MAAHAEELVLNNTSILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQ
DKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLG
KPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNG
NRNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPWQPRANL
ALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNL
ISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPSILN
SVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPILSHDNYRYYVIFVDHFTRYTWLYP
LKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLL
SHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYS
LTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPP
SSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQ
SSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAI
QALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSP
VIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNY
LLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHL
SQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEH
LQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRS
VANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLAD
TLTKPLSRTAFQNFASKIGVTRVPPS
>ATCopia72#LTR/Copia 91-4476 [Arabidopsis]
MVPGIRVTRKSARSKVSTGSVARKSSKSTGVLDSASDSPPMARSQTAGASRGVFSSGFDDPTQSPFFLHSADHPGLSIIS
HRLDETTYGDWSVAMRISLDAKNKLGFVDGSLPRPLESDPNFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDATDIWRD
LFDRFNLTNLPRTYNLTQEIQDLRQGTMSLSEYYTLLKTLWDQLDSTEALDDPCTCGKAVRLYQKAEKAKIMKFLAGLNE
SYAIVRRQIIAKKALPSLAEVYHILDQDNSQKGFFNVVAPPAAFQVSEVSHSPITSPEIMYVQSGPNKGRPTCSFCNRVG
HIAERCYKKHGFPPGFTPKGKSSDKPPKPQAVAAQVTLSPDKMTGQLETLAGNFSPDQIQNLIALFSSQLQPQIVSPQTA
SSQHEASSSQSVAPSGILFSPSTYCFIGILAVSHNSLSSDTWVIDSGATHHVSHDRKLFQTLDTSIVSFVNLPTGPNVRI
SGVGTVLINKDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLDTQSPAISV
NAVVDVSVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVET
VEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKELAFTEFYKAKGIVSFHSCPETP
EQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTGKLPDYSQLKTFGCLCYSST
SSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHISRNVEFHEELFPLASSQQSATTASDVFTPMDPLSSGNSITS
HLPSPQISPSTQISKRRITKFPAHLQDYHCYFVNKDDSHPISSSLSYSQISPSHMLYINNISKIPIPQSYHEAKDSKEWC
GAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLL
LKVSASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGF
EKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYA
LELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYK
VLQYIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASC
EMAWLSTLLLALRVHSGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVKTKDQVADILTKPLF
PYQFAHLLSKMSIQNIFVFSS
>ATCopia65#LTR/Copia 42-4165 Wised via estwise with SC-8 protein + both termini extended with ORFs (one frameshift only) [Arabidopsis]
MSEIVEATSKGKEGGGSASIQCPMLNSVNYTVWTMRMEAVLRVHKLWGTIEPGSADEEKNDMARALLFQSIPESLILQVG
KQKTSSAVWEAIKSRNLGAERVKEARLQTLMAEFDKLKMKDSETIDDYVGRISEITTKAAALGEDIEESKIVKKFLKSLP
RKKYIHIVAALEQVLDLKTTTFEDIAGRIKTYEDRVWDDDDSHEDQGXLCVLKHNHKMANSXYANSDSQGQYEFQDRGRG
RGRGRFGRGRGRGYQQRDKSKVTCYRCDRLGHYASDCPDRLLKLIRLQEQKEKEEDDTHEAESLMMHEVVYLNEKNIRPT
ELESCINNAWYLDNGASNHMTGNRAWFCKLDEMITGKVRFGDDSCINIKGKGSIPFISKGGERKILFDVYYIPDLKSNIL
SLGQATESGCDIRMREDYLTLHDREGNLLIKAQRSRNRLYKVSLEVENSKCLQLTTTNESTIWHARLGHISFETIKAMIK
KELVIGISSSVPQEKETCGSCLFGKQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRYVFVLIDDHSRYMWSIL
LKEKSEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQEFCAKEGINRHLTAPYTPQQNGVVERRNRTLLGMTRS
ILKHMNMPNYLWGEAVRHSTYLINRVGTRSLSNQTPYEVFKHKKPNVEHLRVFGCVSYAKVEVPNLKKLDDRSRMLVYLG
TEPGSKAYRLLDPTKRRIFVSRDVVFDENRSWMWQESSSETDKESGTFTITLSEFGNNGVTENDISTEPEETEEAEINGE
DENIIEEAETEEHDQSQEEPQPVRRSQRQVIRPNYLKDYVLCAEIEAEHLLLAVNDEPWDFKEANKSKEWRDACKEEIQS
IEKNRTWSLVDLPVGSKAIGVKWVFKLKHNSDGSINKYKARLVAKGYVQRHGVDFEEVFAPVARIETVRLIIALAASNGW
EIHHLDVKTAFLHGELREDVYVSQPEGFTNKESKEKVYKLHKALYGLRQAPRAWNTKLNEILKELKFEKCHKEPSLYRKQ
EGENILVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQERYAKKILEEAGMSKCN
TVNTPMIASLELSKAQDEKRIDETDYRRNIGCLRYLLHTRPDLSYNVGILSRYLQEPRESHGAALKQILRYLQGTTSHGL
YFKKGENAGLIGYSDSSHNVDLDDGKSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAATEAAKQAIWLQELLAEVI
GTECEKVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENGQIEVEHVPGVRQKADILTKALGKIKFLEMRELIG
VQGVSKEDFKLKRE
>ATCopia76#LTR/Copia 65-4150 [Arabidopsis]
MSAARIEVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRRELLEEKRRKARSAIVL
SVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFKMSENLSIEGNIDEFLRIIADLENTNVLVSDEDQA
ILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKK
SRSKSRSKKGCWICGEEGHFKSSCPNKNKTQPQTKTTNNNNKGESSNGSSNYSEANGLYVSEALSSTDIHLEDEWVMDTG
CSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLE
NGTLSIIAGDSVLLTVRRCYTLYLLQWRPVTEESLSVVKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCE
DCIYGKAKRIGFNLAQHDTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDEAFDKFVEWANLVE
NQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGVAERMNRTLMEKVRSMLSDSGLPKKFWAEATHTT
AILINKTPSSALNYEVPDKRWSGKSPIYSYLRRFGCIAFVHTDDGKLNPRAKKGILVGYPIGVKGYKIWLLEEKKCVVSR
NVIFQENASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQSPFNPSPATTQTYSEGVNSETDIIQS
PLSYQLVRDRDRRTIRAPVRFDDEDYLAEALYTTEDSGEIEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRP
QHQKVIGSRWIYKFKLGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLELEQLDVKTAFL
HGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAYMSEIGFIRSLYDSCAYIKELSDGSRVYLLLY
VDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAH
LKMRAATVEKQEQDEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYIKGSLGTKLQY
KRSSDFKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVVALSTTEAEYMSLTEAVKEAVWMKGLLKEFGYE
QKSVEIFCDSQSAIALSKNNVHHERTKHIDVRYQYIRDIIANGDGDVVKIDTEKNPADIFTKIVPVNKFQAALTLLQVKP
E
>ATCopia92#LTR/Copia 122-4527 Wised via estwise with ATCopia21 protein [Arabidopsis]
MSNISKXTTQNYLMWKLQVHALLDGYELVDHLDESKEVPFETITFGTTTSPNPEFTKWRRQDRLIHNALIGSISSSVQPI
VGRTTTAAPIWTKLASTYANPSRIHIRVLKDQLKLYTKGTKSIDEYIEGMTIRLDQLAFRDSDLEHDDQIEHILEGLPEE
YKLIIDQIAAKDKTPQINEVXERLLNYEAKLLAKTQAAPSVFALVSANVAQHNNSGNXHNNHYNNTNKKNNNNTPWTPNQ
YQNCQYCNTQGHSARLCPQIQSLQTSTSLMASTPFRPWQPRANLVVGSPYTTNNWLFDFGATHHLTSDLNNLSVHQPYNG
GDDVLIAHGSGMNISHTGSNFLPNQTRSLLLDKILCVDIQKNLIYVFRLCNTNKVSVEFFPXSFQVKDLSTGVPLLQGRT
RNELYEXLVTSSQPVAMVSSFGPKASLINWHSRLGHPSSSISQSIISKFLLPISSSPQKQKQYSCSDCLVNKSHKLXIVS
HHPLEYVFTDVWTSPIHSIDNHKYYLLLVDHYTRYTWLYPLVRKFDVNDIFTAFKALVENKFQCRIGTLFSNNGGKFVAL
RQFLATHGITHLTTPPHIPEHNGLGERKHRHIVETGLTLMSTASVPKQYWTYAFSTVVYLNNRMPTAVLSMQSPFHKLFE
SPPNYEKLRVFGCLCFPWLRPYTQNKLDDRSQRCVFLGYYTSQSAYLCLHLPTNRVYFSRHVQFNEEIFPFKQPESHHCE
NESVQPSSLSNIFHLRPAKISSSPITVVSLPTTNSTAPHDRTSSSRVEVDDISNTNVGQIQLGPTLTLNSXPNPATPLNS
SSQCSTSCTNYLVVVAFHSTDSTNATAPSSTPPXGTPSLDLHPSSPRSSNSQVSNSIPSSSFCFSEPTAHSQNGSQTSTQ
SPSSPIEPTAXVNMXESYNXPQPQQTQPPHQALYNKRQNQIIQPPENTHKMRTRAKNNITKPXIETQSSYHCKSKXPTEP
TTIKQALKDKDWSRACSIEFDVLMGNHTWDLVPPAATQNIVGCKWLFTTKYFSNGLLERYKSRLVAKGFHQQYGKDYAET
FSPVIKSTTIRLVLDVATSKDWPIKQLDVNNAFLQGELTEEGYMSQPPDFVDNNRPSYVCCLKKPIYGLKQAPRAWYMAL
KQFLLHSGFTNSMVDTSLFILSSGNTITYVLVYADDILVTGNDNMMVEQVLASFADRFSIKDPTDLHYFLGIEVTRSSRG
LHLMQRKYIIDLLTKNNMLDVKPVSTSLQPXPKLTLTTGERLRDASQYRSVVGSLHYLSFTRPDIAYAVNRISQFVQHPT
DAHWHAAKRVLRYLAGTSTHGIQLNKSSPITLLAFSDADWAGDTKDYVSTNGYLIYLGRNPISWSSKKQRGVSCSSTEFE
YRAVANTASEFRWLCSLLYEMKVRLPAAPVIYCDNIGATYLCANPVFYSRTKHIALDYHFVRNHIQDGILRVSHVFTNDQ
LADTLTKPLPRTQFHHACVKIGVTQFPPS
>ATCopia91#LTR/Copia 405-4973 Wised via estwise with ATCopia11 protein [Arabidopsis]
DQYENPFFLHSSDHAGLVLVFDRLTTGADFHSWRRSVRMTLNVRNKLGFIDGNITKPSPDHHDFGSWSRCNDMVATWLMN
SVCKKIGQSLLFISTAEGIWKNLLARFXKMAPRVYEIEQRLSIIQQGAMDVSSYYTELVTLWEEYRNYVELPVCTCGRSE
CNAAVLWERLQQRSRVTKFLMGLNESFESTRRQILMLKPIPTIEDAFNMVTQDERQRSIKTPSSKTVVFQASGPNQSSGQ
CYQDVSSYQGQMDNTAFAVQNEYRPRPPRPVCTQCGQSGHVVQKCFKIIGYPPGYIPRFKSTISNYQSQRSPAPSTFQPR
GYSANAASKPHSVANIMTNPPSLYIPPPATEVNNLDINKLSGDQIQTLIQQLSGRIQTSEPLAPSPSTSAPSTVTEHGIM
AVQSSAGTIPFPSSSLRFENDQLTFQHQCLSSLYTNLPHGSWIIDSGATTHVCSDLAMFNETNTVFGVTVSLPNDTRVQI
THTGTIPLSHSLILQDVLHVPSFKFNLISVSSLLKTNHCSSHYYVDSCIIQEFIQGLTIGRGILLHNLYILRLDAPSTHD
QFAGSLVVDGILWHQRLGHPFADKLKXHRISGTLSSSKSSFMHPFHCSICHLAKQKRLSYESHNHLSSLSFDLVHLDVWG
PFSIESLEGYKYFLTIVDDCTRVTWVYMMRNKSEVTQHFSDFIKHVLTQYKAVIKMIRTDNAPELAFKSIVKEHGMVHQF
SCAYTPQQNSVVERKHQHLLNVARSLLFQSNVPIAYWSDCLLTVVFLINRIPSVLLKNVSPYELLTKRKPAYDFLRSFGC
LCYVSTLQKDRNKFSPRSEKCIFLGYSSSYKGYKVLHIDLNCVSVSRNVVFHENIFPFHDNPISPVSDVFSHAILPLPIH
VNDEIHTSSSPNAHNEHSHASSASSSSTTSSQPSTSSSSIIPVLPEAVTTETACVSLSVARPKRQGKAPSYLSDYHCSFT
QISEPSPQNSFPHLKVYSTPYLISSVLSYSSLKSPFQSFVLSYSAETEPKTFKQAIISVQWTKAMDEELGAMELNKTWSV
VSLPPGKNVIGCKWVYTIKYNPDGTIERYKARLVAKEFTQQEGVDYFDTFSHVAKLASVKLVLGCAAKKGWSLTQIDVSN
AFLHSELDEEIYMSLPQGYTPSSGFLPSHHVCRLHKSIYGLKQTSRQWYKCLSKTLLDAAFIQSQSDNTLFVQLQGTSFI
AILVYVDDILIASNDSNQVTLIKAYMADHFKIKDLGPARFFLGLEIARNSEGIAICQRKYCLDLLTDAGLLGCKPSTVPM
DPKVNLTADMGTLLDNAKPYRKLVGRLLYLCVTRPDITFAVHRLSRFLSCDTDVHMQAAQRVLKYLKGNPGQGLFYSTNT
SLCLNGFADADWGTCLDSRRSVSGVCIFLGTFLISWKYKKQDVCSSSSTEAEYRSMAVATKDLLWFSYMLKDLHIKVETK
AKLFCDNKSAMHIANNPVFHERTKHVEIDCHTTRDQMKFGFLQVHHIGTENQLADILTKPLHPGPFKSLLNRLGVSNLFL
PKE
>Copia2-NVi#LTR/Copia 108-4114 via tfasty with Copia3_XT, 4 frameshifts and 2 stopcodons.  [Nasonia vitripennis]
MTTANESPIHRNKLDGTNYQLWKFQMRVTLMANGVFEVVDGTTEKPADLTNTDGKKWIADNAKAMCLLAGSMMPLHLENC
ITSDTAHEMWMKVKLIHEQKSEANKASLLQKFYACRMEATESMVQFSTKVMNMARMLEDLEEKVSELGIVAKILGSSPKK
YNNFVTAWDSVDAKDQTLNKLQERLIKEEKRLSEIEEETSAFIVNTKPNIYEKQRFDERTTRSHDNRTYQGRKTKTGLIC
YYCKKTGHFARNCPKKKRNYHKGKQNSESNAIALVATINDRPGEIARILKLDSTDVWLTDSGASRHLTYRRNWLQDFSVC
SGESVTLGDNEECKIEGKGTIFIEKHVDGEWISGKIVDVLYVPRLRKNLVSVGVCTSKGYRVSFTKKVEFFFEGIKVAQG
IKQGNEIYRMLFRVVERPEANVSTVSLQRLHERCSHVNEKTLLSMVKTGAVKGVDVKAESIFSCDSCKIEKSHLHPYKKD
QEHRKxLPGELFHSDVCGPMSVTSLGGARYFLTFIDHASNYRMVSFLKHKADVYDRFKAFEHQVNTKFNRPMKVLRSDNG
TEYCNRSMRKLLEDKGIKHETSAPYTPQQNGKSERANRTIVESARTMMLRANAPRFLWAEAINTAVYLLNRATSDKESNS
TPFEAWTGQKPDYSHLKVFGSPAYVHIQKMFRKKMDAKAFKATFVGYEGDSRNYRFYNPATKKVIQSREADFLEDRVGEA
SEDAVDSATIWKHKGQPWEMEREEAVERYSPAPPSLIPEPPSSPPSPRRIADHAPRPVASPPPEVEPVPAKTTKAANSND
RQLRDRSNIKKPSKYQANIIEYNDPQTYNDELQAHAKNGTWELVPKPTGHSIIDSKWVLKYQAVKAGKESRCKARLCARG
FGQEYGKNYQETFAPVVRYDALRMLLAIANQEDYEIVQFDVKTAFLHGLLKDEVYMAIPEGLNIRGEVDNVLCKLKRALY
GLKQASRCWNITFKNCMLDLNFKPCDSEKSIFVSEKNSELVYIILFFDDGLIMAKQSNVLTNIISALKERFEITVCEPRT
FVGMQIERDRANRTMFLHHSEYAWKILKRFNMLDAKTVCTxDEKGIDLNSMKQHDSETVKLPYRELIGSLMFLCTVTRFD
MMYGVNLFSRFLDNYTIAHWTAAKRILRYLRGTINHGILFKNSGSNHELIGFCDSDYAGDTETRRSTSGYIFRYCGGPIS
WSVQRQKRVTLSTTEAQYVSASNATREVVWLRELLRDVGFPCTKPTILNIDNQGAIQLIKNPVFHRRSKHIEVQHHFVRE
KYECGAIVWKYVPSENQLADVFTKALARELFVKLCKNIGLSFVENLKAIDVSESG
>Copia21-PTR#LTR/Copia 491-4948 [Populus trichocarpa]
MTELTSDPANSPPSPPPPRQPPRPHPSHPALAVSNINTFIKVTLDIEKGQYITWSELFKIHARAYQVLDHIIPPSAAEMK
QDTSLQDTDPDLWSRVDAIVLQWIYGTISEDLLNTILERDSTAALAWNRLRDIFSDNKNSRALYLEQEFSKVQMEHFADA
SSYCQHLKSLSDQLSNVGSPVTNERLVLQLVSGLTDAYASVGSQMRHGDSLPPFYKARSMLVLEETARMKKAAQTSSNSA
FFVSPVAHSSGHTAGNPFHHRSNHTSNRSSSTRNSRGGGSGARSSKGRGRGGGRGGQLHQQQYTTPWQPMSSQQQQWSFP
PWAGPWQPWATPSCPYPTANHLSHQPSSQRQTGLLGPRPQQAHMTASTQQAPSSYAPTDIQAAMHTLSITPPANQWYMDT
GATSHMTANGGNLTSYFNMSNNHNITVGSGHTIPIIGCGNALLPNPNPSFSLNNVLHAPKLIKNLVSVRKFTIDNDASVE
FDPFGFSVKDFQTGMPLLRCNSTGDLYPVTTTPPIGISPPSTFTVLSPELWHSRLGHPGAPVLSSLRKNNLIVCNEFQDN
FVCHSCPLGKQVKLPFYDSLSYTSLPFDIVHSDIWSSPTLSSGGHRYYVLFLDDFTNFLWTSPIATKSQVHSIFLSFRTH
VKAQFEREIKCFQCDNGGEYDNGPFHKFCQLNGMTFRFSCPHTSPQNGKAERKIRTINNIIRTLLAHASLPSSFWHHALQ
MATYLLNILPNKKLAFQPPTKILYQKDPSYSHLRVFGCLCYPLLPSTSRNKLQARSTPCVFLGYPSNHRGYKCYELSSRK
ILISRHVTFDEYTFPFSKLHAPPSPTYDFLDAGITPLFHSPNQPNPFEAQVYPTPLVDPPAQPTPPLQAQQTPLITPILT
SPVRDLSPHQSASPNRTLPSPSNSSPRPISPSPTDQLNSHSSPPPMDTTQAIPLDRPPHSPQMTTRSQHGIFKPRKLLNL
HTSSDNSISPLPTNPLNAFHDHNWKMAMKDEYDALIENKTWDLVPRPVNTNIIRSLWIFRHKKKSDGSFERYKARLVGDG
AGQQTGIDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLEETVYMHQPPGFRSSEHPDYVCLLKKSLYG
LKQAPRAWYQRFTDYVTTLGFSHSFSDHSLFIYRQGNDMAYILLYVDDIILTASSAALRQSIMSKLDSEFAMKDLGPLSY
FLGISVTRHSGGLFLSQKKYAKEIIERAGMSSSNPSPTPVDTKAKLSISSGNPYHDPTEYRSLAGALQYLTFTRPDISYA
VQQICLFMHDPRTQHMSALKRIIRYIKGTIEFGLHLYLSSVHKLISYTDADWGGCPDTRRSTSGYCVYLGDNLISWSAKR
QPTLSRSSAEAEYRGVANVVSESCWIRNLLLELHCPIPKATLVYCDNVSAVYLSGNPVQHQRTKHIEMDIHFVREKVARG
QVRVLHVPSRYQIADIFTKGLPLQLFDDFRNSLNIRSPPVSTTGVY
>Copia11-PTR#LTR/Copia 18-4166 via tfasty with ATCopia51_1-4214, 1 stopcodon. [Populus trichocarpa]
MESLTTSILSPAAALSLDFTPSKTRLPDISTKLASNNYLLWKAQVVPILRGHGLLGYVTDGVPCPELTIVDADGASQPNP
ATATWLRIDQLVLGWINSSLSDGPLSQVINSESSHDAWTVLETLYGSHTRDRIQxIKGELQTLTKGIFSLEDYLHRAKSL
ALSLRGAGKPMDDDDLIICILRGLGSEFDPIVAALNARDMFPPLEGVIGKLRDFEIRLQGTRTSQSSVAFYTNKNRFHAR
SQGSHNARGRSGGYQKMHFQQRSKDVRSSRSIDNSSGAKLSSFTRGSRNSSRGRGGITCFRCGGPNHKADGCFASDEEAE
QYKAFAAIHIGDTTEDTWYPDTGANQHMTPNSNEVQGIHPYSGTDTVMVGNGNGLSITGIGQTTLPTTTLQLHNVLVVPD
IKGKLLSVSQFTRDNNCYFLFYPWGFLLKDMKTNQVILKGPMTNGLYPINLQQLSKPSLSFLANKVPGSLWHARLGHPHS
QILSRLCLPSLNKMTAFCESCMLGKSSKLPFHSRQTYANSFLHTLHTDVWGPASVSSYDGFRFYLLIVDEYSRYIWLFPM
ARKSDVATIFPAFLQQMAKQFPNSVKIIQSDGGGEFVNTVLQTHFAANGIIHRLSCPGTPEQNGLAERRHRHIVETSLTL
LAHASVPVKYWTAAFNTAVFLINRLPSSVLDHMSPHELAFGSSPNYDFLRVFGCSCYPLLSPFGRTKLEYKSICCVFLGY
SANHKGYCCLEPHSGRLYISRHVRFNEQHFPFKNVTASHSSRSQLFQLQALPTSLQNTALQHSPTSSQSAGMAAVEVVPT
QLMEAIHSSVHLSPTPPPSALHSSSPASAPPSIPQRTHQMVTRTQTGNLKPKVFLSSRYHIPVCFLADLAAQPPEPTSYR
QALQNPQWKQAMQAEMDALHANNTWTLVPRKPDMNVVSSKWVFKVKTKSNGTLDRYKARLVARGFTQLPGLDYDETFSPV
VKASTIRLILTIGLSQGWTIRQLDVNNAFLHGDLQERVYLAQPPGHEDPALPQHVCLLHKALYGLKQAPRAWYMKFSNYI
QSMGFLQCPYDQSLFYQRQGSDILLLLIYVDDILITGSSPSQISAFISHLSSVFSMKDLGDIHYFLGLQIARDATTITVT
QTRYLVSLLQKFSLAGAKPVATPLASGTLLTATEGALLSDPTFYRQLVGSLQYLTLTRPDISYSVHRVCQYMHAPREPHL
IAVKRIFRYLKGTLTLGLHLVHTPLIALHGFCDADWAGCHDDRRSTSGFAIYMGNNLLSWGAKKQATVSRSTAEAEYRAL
ASTTAELMWFMNLLQSIGYCLPPPKLYCDNISAVTMAKNPVFHHRTKHIEIDVHFVRERVASGDLLLEHVAGPDQIADIF
TKSLCSAKFVPNRDKLFIGSLPP
>Copia24-PTR#LTR/Copia 240-4634 via tfasty with ATCopia23_39-4058, 2 frameshifts. [Populus trichocarpa]
MAEGNFVQPAIPRFDGHYDHWAMLMENLLRSKDYWSLIESGIPASTTGAEAELTEVQQKHMEEMRLKDLKVKNYLFQSID
RTIMETILNRDSAKGIWDSMPQKYQGSTKVKRAQLQALRREFELLGMKDGESVDEYFGRTLTIANKMKTHGERMEQIVII
EKILRSMTTKFDYVVCSIEESNNLAEMTIDELQSSLLVHEQRMRGHKEEEQVLKVMSEAREDARFGGRGRNRGGFRGNFR
GRGRSWGRQSFNKAIIECFRCHKLGHFSYECPGYEKKANYAELECEEEMLLLSHVEIHDFTELHEEIMMTEVNAEEEMVL
TKELNAEEMVRPEELNAELHDFAELHEEKVLTLTEELNAELHDVAELHEEKVLTYLNEEEMVLTEWHEEDEMVLTELNAE
EEMVLMSHVELHNSTREEVWFLDSGCSNHMSGNKLWFTELDEKFRHSVKLGNNSRMAAMGKGYVKLKVAGAIQRIDEVYY
IPELRNNLLSIGQIQEKGLAILIKGNTCKLFHPTKGLIMEIAMTVNRMFIMLATIPPKESVAFFQTSEESEAQLWHSRFA
HLNFKGLRMLYYNKMVNGLPLLKAPTKVCADCLSGKQHRDNISKKSHWKATHKLQLVHSDICGAVNPESNSGKRYLITFI
DDFSRKCWVYFISEKSYAFNMFKKFKNLVEKEAGSLVECLRTDRDGEFTSKEFNEYCSMNGIKRQLTTTYTPQQNGVAER
KNLTIMNLVRSILAEKHIPREFWLEDVNWCIHTLNRSPVAAIKEVTPEEAWSGVKPSVGYFRVFGCIGHVHVPNERRTKL
DSRSMKCILLGVSEETKGYRMFNPLTKKLIISRDVIFEENATWNWAADNTSNTLSRGDNNDSIHEEELEEDEEQIGDDVA
ADTSEQIGDDVAAETSAADVAEPEAEEENENLPQAGVRNRRAPQWMEDYVMGANIAEEEETQNMVLYTTAGDPHTYEEAK
KNQQWRAAMDNEIAAIERNDTWELTVLPNNSRKIGVKWIYKTKLNEKGEVDKYKARLVAKGYAQQHGIDYTEVFAPVARW
DTIRMVLAIAAQRKWKVYQLDVKSAFLHGKLDEDVYVEQPLGYEKKGEEHKVLKLKKALYGLKQAPMAWFSRIETYFVKE
GFARCPSEHTLFVKIEEDKKILIVCIYVDDLVFTGSDEGMFADFKASMKREFDMTDLGKMKFFLGVEVVQNDEGIYLSQR
KYALEVLERFGLEKANSVRNPMIPGMKLMRNEDGEQVDVTQYKQMVGSLMYLSVTRPDLMFGIGLISRYMEKPTTLHMHA
IKRILRYVKGSVNLGIHYKRKAAGDERLMAYSDSDYAGDQDDCRSTSGYVFMLSEGAVAWSSKKQPVVSLSTTEAEFISA
AHCACQAVWMRRVLERIDCKQGTHTIIHCDNMSSIKLAKNPIMHGRSKHIDVRFHFLRELCKEGVIELKHYNTQDQIADI
MTKALKMDTFEKLRGLLGVCEVPTE
>Copia35-PTR#LTR/Copia 99-4342 via tfasty with ATCopia62_100-4614, 1 frameshift and 7 stopcodons. [Populus trichocarpa]
MAENTNPTSEMDSSNPFFPNHGDSPGAMIVSKSLNGENYNSWKRAMMMALSVKNKLSFVNGTLGPRIFQLQKSISCLSQE
NNFVSSYFIAMKGLxDELGNHQPIPTCTCGALKTILSYHHQQHVYQFLMGLNESYSHVxGQILLIDPLPSINKVFSLVIQ
EERQRMISSSSLSFNQNTTTLFTKTMSPTRFASNNSLYIRKDRPICSHCGISGHTVEKCYRIHGFQPGYKFNRGKNASPS
VNQVSGLNTPQLPITYEQCQQLINMFKPTISEHDSSVNQVSLSANKESEIPMQGESMTSAGDSSIIAQLSTLDSKHSIFS
SSLSLTQQSSLANPAKTPWIIDTGATDHMIYSISFFTSITSAVSKSVRLPNGQCTSVTYIGTIKISESFVLTDVLCIPSF
SFNLISISKLIKNLQCCVIFLPKFCFVQHLTSWKTIGMGKEARGVYHLLQNPVSVLPKNFVSVNSAKFMSNHTITDLASA
SFSVNFVNNSLWHYRLGHPSDFPLKLIFHVIPQVLHESNKTxSICPLAKQHRLSFPHSTSTSTxPFDLIHYDIxGLFSTK
SLTGSSYFLTIVDDHTRFTWIHLLDNKSQTRTHIKAFFNLVKTQFNAKIKSLRSDNGVEFNMSHFYASKGVIHQLSCVET
PQQNSSIERKHQHILNVARSIHFQSHLPLQFWGDCILTPVHLINRIPTPILQNKSPYETLFKSSPSYSHLRVFGCLCYAN
TLFQNQHKFDPRAKPCIFLGYPFGIKGYKLYDLHLYTVFASRDVVFHKNIFPFALKYPISPTDSVLPLPIPMHESAIPSL
DPLLTNSFPLSSINASPSNSSNMNSTSEPCMSSTSEITPQPSRKSSRVKHTPGYLYDYHFYLATSTSNPAPSSTASGIPY
SLSSVLSYDHFSSTEKFFSLSVSALVEPTSSIQAVKHEEWREAMDTEIKALELNDTWTVVDLPASKHVIGCKWVCKVKLK
SDGTLERYKVRLVAKGYNQCEGLDYYETFSHVAKLTTMRTLLAVAAVKKWHLHQLDVNNAFFHGQLDEEVYMSLPPRFTN
QEESKVCKLHKSIYGLKQASRQWFAKFFSALLEFGFIQSKVDYTLFTRTLEGSFIALLVYVDDIVIASDNSTEVSKFIQL
LNDRFKLKDLGQLKYFLGLEIARSELGISVCQRKYALEVLEDTGMLASKPVQFPMEPNVKFSKDSGQILEDPTTYKRLVG
RLLYLTISRPDISFVVQVLSQFMDKPRVPHLAAATRVLRYIKASPAxGLFFLVISSLQMKALCNSDxAGYVDSRRSVTGY
CIFLDNSLISWKSNKQTIVSRSSAEAEYRAMASTCCKVIWLRTLLQDLQVPPQTALLYYDSKAALHIAANPVYHERTKHI
DIDCHMVREKIQLGILRTFHVSSKHQLADIFTKVLGFSLFYPLISKMSLHNIYSP
>Copia27-PTR#LTR/Copia 55-4185 [Populus trichocarpa]
MQQQRNMTPEGNFVQPAIPRFDGHYDHWSMLMENFLRSKEYWGLIENGYVETESGIEQTEMQRKRIDELKLKDMKVKNYL
FQAIDRTILETILVKDTSKQIWESMKKKYEGSARVKRSHLQALRREFETLEMKAGEGVSEYFSRVLTVANKMRIYGERMT
DVTVVEKILRSLSEKFNYIVCSIEESKDIDQLSIDELQSSLIVHEQKFQRHTGEEQALKITNSEDRFNARRRGRGAAYRG
RGRGRSSQFYNNKATVECFKCHKLGHFQYECPSWDKEANYAELGEEEEMLLMSYVDMNHTRREDVWFLDSGCSNHMCGDK
SLFHVINENFRQKVKLGNNTRMDVLGKGNVKLKVNGLTHVVSDVFFVPDLKTNLLSIGQLQDKGLTILIQHGYMNIYHPE
KGLIIHTEMTANRMFVLLTNSLHQKPACLYNSTPDLAHLWHCRYGHLSYKGLRTLQAKNMVHWIPQFKIPSTVCATCMIG
KQHRDPIPKHNNWRATEKLQLIHADLCGPISPISNSKKRYIICFIDDFTRKAWTYFLVEKSEALHMFKRFKNYVEKEIGG
YIKCLRTDRGGEFTSFEFNEYCIEHGIKRQLTAAYTPQQNGVAERKNRTTMNMVRCMLTERRIPKNLWPEAVNWTIYVLN
RSPTLAVQNHTPEEAWSGIKPSVEHFRIFGCMAHVHIPNVRRTKLDAKSIPCVLLGLSEESKAYRLYDPVEKKIVISRDV
VFDEEKSWDWDQSYNEQLVADLECGDEGVTGTSMNEEDIPEELEHGADSNEDLIASFQPGENRGESSSLHENLLGSPQSR
PQLGENSRASPGYYGGSSQHGENRGESSVFHERRVRGPPRWIRDYVTGELSEEEDANVNLILFTSTDLVQFEDAVKYEHW
RTAMDIEIKAIERNNTWELTDLPAGAKTIGVKWIYKTKLKEDGEVDKFKARLVAKGYVQQQGIDYTEVFAPVARMDTVRM
IVALAAHKGWILYQLDVKSAFLHGELNEEVYVEQPKGYENKQNPQQVYKLKKALYGLKQAPRAWFSRIEAHFINEGFEKC
YSEHTLFIKTDREGNILIVSLYVDDLIFTGNNELMFAEFKTSMLREFDMTDLGRMRFFLGIEVLQRPEGIYICQRKYASE
VLKRFKMENSNSVHNPIAPGCKLYNDENGACVDETLFKQMVGCLMYLTATRPDLMFAVCLISRYMAKPTKLHLLAAKRIL
RYLRGTTELGIFYKKGGREGLIGYTDSDYAGDLEDRKSTSGYAFMMGSGAVAWSSRKQPIVTLSTTEAEFVAAAACASQA
VWMQRILEKLSLKESKGTTIFCDNSSTIKLSKNPVLHGRSKHIDVRFHFLRDLTREGAVELVYCGTQEQLADIMTKPLPL
AAFQKFRNQLGVCEIPE
>Copia10-NVi#LTR/Copia 144-4487 via tfasty with Copia4-NVi, 3 stopcodons.  [Nasonia vitripennis]
MASRNQISSFQILDKLSxRENYRSWAVAMRAYLEIEDLWDTVEQPAGGTISTDPKKLAKARGRMILAVEPEIYPxLENAV
TPKQVWGELAKTYDDKGLARKVHLLMEATTTKFESCRSMEDYVARIISATKKLATIGTKLPDDLIGALLLAGLPPAYKPM
IMALSNSGAEITGDLIKNKLLEESQSVTDDFESRGLHVQAQAAQFSNRSHRGRGNYHRTRGSRQSAAPSSRNPATNVRCY
NCNEFGHYANKCTEPKRNKNHACTMSAEGDSDTEETVCALFVPSSVTHTHTARLDTSAADSETAVLKADNALLAVGLLST
TSKQEWILDSGASTHMCCEGVHLTNIRAPKTTEVTAADKAKIRVQAEGDLHITNTGYVGSKxILLQNVLHIPGLTANLVS
VSAITRQGGAVTFKEKKCQVMDHTGSVVLEGNMCNNNVYKLNLQPNPGQSSKVSTAVAFKAVQKHSITLWHRRMAHLNVN
YLKQLKEVAVGVDFDDKLLHKCEICVAGKLTNKPFQATSTRASRVLQLVHSDVCQVEDLSLNKAKYFLTFLDDHSRKLFV
YFLQKKDEVPEVTQKFVLFAENQTGQRLKILRTDNGREYVNERLRTFLQSKGVKHETSIPYHPQQNGRAERVNRVLLEKV
RCMLIEASLRNKFWAEATPTACYLSNRSPKKCLGGKTPEELWTGQKPDLTLLRVFGCQARAFIPSNLRKKIAPTSKQAIM
IGYCENQKGYGLWSHEEQRIFTASNVEFFEDEQPKNVPANRIYLSIENHEPLYEHNQDEPAVRVEEPAKSESEEKVPEKE
VLKGEVSEKESKLKRRLPISKSIREEEPGNKILKKDLPVNPDFNRRDVQNYAENEQVQIKKGGKSSVKPAASNLSRPLTR
SVSNQLDEEASSDEEYKTEPVRKTQRRRKKPKHLDDFVTYSATIEEGEPKNYQEAISCSESDQWRRAMAEEYSSIVKNNT
WQLCNRPSGESVVGSKWIFKKKRSADGSTRYKARLVARGFSQQKGVNYDETYSPVVRFVSLRLLFAYAVRRDLDIYHLDV
ETAFLHGDMTDTVYLQQPEGFVAKQHENQVCLLKKAIYGLKQGSRNWNIKLDGALKKLNLRQSKLDSCVYSFSNSVKLII
VALFVDDLIVFTNSIDFLDILKQGLMNICVVKDLGPLKRCLGVNVHYDKTKGVMKLEQTDYINTLLRNFGMEECRSVSTP
LETNINSRSGSPSSAKFNPAVVPYQNAVRSLLYLVQATRPDLAHAVGEISRHNLDYDESHWAMIKRVLRYVQGSKHLRLR
YTRDGDDFISGYCDTSWAGEQGDRRSTSGYIFMVQGGVISWNSRRQSTVALSSIEAEYLSLSAAAQEALWLGTLASELRI
RDDKPMPIYCDNKGAIDLSKNSRFSPRTKHIDVRHQFIKEYIEKGEIEVIFIPTTQQLADTLTKPVGPAKLNQFINAASM
RVAEKRED
>Copia3-PTR#LTR/Copia 280-4336 via tfasty with ATCopia31_1-4050, 1 frameshift and 1 stopcodon. [Populus trichocarpa]
MASENNFVQPSIPRFDGHYDHWSMLMENFLKSKEYWSIVDSGIPELTEGVVLTNAQRTEREGLQLKDLKAKNFLFQAIDR
SILETILCKDTSKHIWDSMKKKYQGSTRAKRQQLQALRSEFETLRMKSGESVTNYFSRTMVIVNKMRTHGDKTEDVIIVE
KILRSMTPKFNFVVCSIEESNNIEELSIDELQSSLLVHEQKISQQDKEEQLLKASIDYHPTPVKAYRGRGRGRNDYKRND
NRGHIQQFQHHRGHHQQNQHHENHFHERGRRRGGHQNGGRSEHHSISADKSNVECYRCHRYGHFQSDCKTNMTRGYGEKL
NFAEKEEEISLLMVCHAKEETNRNLWYLDTGCSNHMCGDKSVFSVLDESFRDDVKFGDNSKVSVMGKGRVSIQTKEDSTH
NISNVLYVPDLKTNLLSVGQLQERGYEISIKNGVCQIRDDNLSLIAQINMTTNRMFPLYLNSTIQSCFLATMNNDAWLWH
LRYGHLNFGGLKTLQKKRMVTGLPKIAAPSSVCEECVVSKQHRKPFPKFKSLRAKMxLELVHSDLCGPINPTSNGGKRYI
ITFIDDFSRKIWVYFLQEKSEAFASFKHFKALAEKEVGLPIKILRTDRGGEYNSLEFTEFCKDHGIKRQLTAAFTPQQNG
ISERKNRTILNMVRSLLNMSGIPRDFWPEVVTWSIHILNRSPTFAVQNMTPEEAWSGKRPAVDYFKIFGCIAYAHIPDVK
RKKLENKGEKCVFLGVSDHSKAYKLYNPNTKRIVISRDVIFDEDQFWSWHSSVPNKPLVLDTDIDNDNEEGLQAQPTVES
SQLVDDQRPLHARTRPAWMADYEVAGIAQDEDPLTYFALFSDCDPTTFEVAVKTSTWRQAMNEEIAAIERNNTWELTQLP
EGHKTIGVKWVYKTKLKENGEIDKHKARLVAKGSKQEFSVDYKEVFSPVARMDTIRLVLAMAAQNSWSIFQLDVKSAFLH
GELEEQVYIDQPPGYVKLGAEDKVYKLKKALYGLKQAPRAWYSRIEAYFLREGFQKCPHEHTFFVKTENGKMLIVCLYVD
DLIYTGNNYAMFEKFKESMMIEFEMTDLRMMHYYLGLEVVQSTTCIFISQKKYVQEILERFQMNNCNSVGTPTEVGVKLF
KDPEGKRVDSTNYKQIVGSLMYLTATRPDIMYAVSLISRYMENPKEIHLLAAKRIFRYLQGTADFGLLYKKGEHSDLMGF
TDSDYAGDQDDRKSTSGYVFMLGTGVVSWSSKKQPIVTLSTTEAEFVAAASCACQAIWLRRILEEIQFKQQGETSIYCDN
SSTIKLSRNPVLHGRSKHIDVKYHFLRDLAKDEVINLIFCRSEDQVVDIFTKPLKTPLFHKLRELLGVCSLG
>Copia2_OS#LTR/Copia 37-3945 [Oryza sativa]
MAGFADALRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQFEEATTLFVGCILSVLGDRLVEVYMHM
TDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRS
FGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDER
TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSY
QVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGK
GYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHK
AAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDR
GGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK
TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFF
ESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYAS
PDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR
LTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTS
AGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQS
HYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRA
LERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTA
TVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADP
FTKGLSRNVIDNASKEMGLRPM
>Copia4-NVi#LTR/Copia 245-4589 via tfasty with Copia4_AG_112-4080, 2 frameshifts and 7 stopcodons.  [Nasonia vitripennis]
MASRSSNGTYQLIDKLVGRENYRQWSVAMRAYLEVEDLWDTIEARTDGTLSTDPKKMQKTRGRIILAVESEVYAYIENTT
SPQEVWNELAKTYDDKGLTRKVSLLQATTTTRLKNCRCMEEYVSNIISATKKLSASGTKLQEDLVGALLLSGLPSSYQPM
IMALGSSGAEITADLVKNKLLEENxNGVRESDSETLGLYTHQSHHSSFQSRNSNNRGRHPSKQKQRNQYGHLANRCTCPE
SQIPKSLHSSYISxRERMxGHCVTTLTMRDTHSAVVDTVLADAEAQTTIPVETLFVVDLVSNASKSEWILDSDASIHMCx
SDAHMSNVRKPKTATVTAANKAKVPVKAEGELVLQYYDDNKYSKVRLENVLCVPDITSNLISVSALVKKGFRVLFKDTKC
EVIGKNNVVVLQGQLTNNNIYKINLRPNSHQEATKSVIALKVTEKCSIDLWHRRMAHLNQxYLNQLRQVTTGIDFDKSQV
GKCEICVTGTLVQKPFHQNNKSTNSILDLVHSDVCPVDHLSMGKAKYIITFLDDLSRKTFVYFLKTKDEVPAVVQNFIKL
VNNQTQKKVKIFRSDNGKEYVNQRLKAALEQLGVKHETSIPYVPQQNGRAERVNRTLLEKMRCMLAEAKLSKMFWAEAIS
TACYISNRSPRRCLNGRTPEEVWPGSQTDLSSLRVFGCRARAYVPSYQRSKIDLTSKPAILLGYCEDQKGYRLWNESERK
VFTSCNVQFFEEPHGIAQKSKSVYFPVESENLDESTIPQNVVEPEKETIDVDLPVKKKIVEPVNKKDVEPAVEPVKKKIV
EHVKKKIVEPVNKIICKNVPVEESEETRCVPEKENRKRDSQGLNHSSEPVIKRTKQTDSDILTLNPAAEKCSRSTQRPNT
RSAGRQAKSVDEGSSDEDFSSVPIRKSMRRKLKPKHLDEFVTYSAISETGEPQSYQQEINGPEVEQxINAMREEYQSIIK
NSTWELCDLPHGQPVIGSKWILTTTYKARLVARGFSQVRGINYDETYSPVVRYTSLRLLFAYAARRDFDIFHLDVETAFL
HGEMGKTVFLQQPQGFIKRGHETKVCRLKKAMYGLKQGSRNWNLKLDSAFKSLNLVQSNYDSCVYTYKTVNKSIIVALFV
DDILVFTDSTDFFNILKDGLKSVCTIKDLGPVRRCLGINIHHERTLGVIELAQKDYIATLLENFGVDECRPTTTPMDSNH
TQAQNSFSEESLPVNQIPYQNAVGSLLYLAQATRPDLAYAVSTISKYNQNFNESHWNVVKRIFRYIQGTKDLRFRYSKQD
NPSIIGYCDASWATDPDDSRYTSGYVFTCQGSAISWNSRRQATVALSSTEAEYLSLSAATQEAMWLRRLSIELSDSAxRA
FLVYCDNKGAIDLSNNSRFSPRTKHINVRHHFIKEIIQTKQIRVRFASSSHILADSLTKAATPRKIQDFVGAVGLKTNQE
QKKSQGHNK
>Copia9-NVi#LTR/Copia 121-4558 via tfasty with AACopia1_194-4087, 2 frameshifts and 1 stopcodon.  [Nasonia vitripennis]
MAEIICTAVQKLNSVNYSTWSYKIQLMLMKDKVWDVIKDEPPAAADTTYAAWTARDETAQVTIGLLVEDSQLRLIKNAKT
AREQWNTLKEYHQKSTLSGRIHLQRRFYHTVLQEGGDMVEHIATLSEYVDKLFGMGHSVDDSTLVGVLLCSIPESYGTLI
MALEGRPDKDLTPDFVKGKLIDEYMRRKDSREARSSASDEVAMNTTYSEKKGTQPSKLKCFFCKKKGHAKSENAKTAREQ
WNTLKEYHQKSTLSGRIHLQRRLYHTVLQEGGDMVEHIATLSEYVDKLFGMGHSVDDSTLVGVLLCSIPESYGTLIMALE
GRPDKDLTPDFVKGKLIDEYMRRKDSREARSSASDEVAMNTTYSEKKGTQSSKLKCFFCKKKGHAKSECRKYKTWQEKHT
EKANKVTSVIIENDEDYGCYLARVEACLGAKAEIENWIVDSGATSHMAQTRTFFEELDAGSKGYVRLADDENRVQVEGVG
TAAIKCADASEKISTIKVREALYVPGLGANLLSVSKLTQGRIxTIFEENICKIIKNGTVLAIAKVASDLYELRAKKSFAA
KAVAIKKSCAEDCHHVWHRRFGHRFTTAIKELEEKQLATGIKISDCGRNIVCQDCIKGKLARKPFPKESRTQTHAALDLV
HTDVCGPMQTLTPGGKRYFMTIIDDYSRYTHLYIMRHKNEAAGLIQEYVQMAKTQFHKVPKIIRSDRGREYVNTELQSFL
KNQGILIQYTAPYSPQQNGVAERKNRSLLDMSRCMLFDAELDIKYWGEAVHTANNLQNRLPSRATTKTPYELWYSEKLHL
ADLQIFGSPAYMHIPKEQRRKLDHKGKKYFFVGYSDESKAYRLLDTETDKIKISRDVEFVDKRGSKEKSHPSQEECEISI
LHNKQNENIDQPDDNSSIASSSSEDYASIEESSLESSSSDVKESSVQDDNVPEAEAPPVTRRSERSNRGVPPDRYMAASN
LTRLESEPRSVKEALSRPDAHHWKKAMEEEIFSHIKNGTWVIVQRPDGRDIIKCKWVFKIKYNANGEIERYKARLVACGY
SQIYGEDYNEVFAPVVKQTTFRTLLTVAGHKGLQIKHFDVKTAFLNGELKENIYMKPPDGFITQDGQEMVCRLRKGIYGL
KQAAKVWNDCLNDCLTAFGFKQSQADLCLYTKDDNGDKTYLVVYVDDFLIAAKDSMKIDEVAEFLSTKFQLKDLGNLSFY
LGIEIRRDEDGIFYMKQEKYIEKILHRFGMQDAKVSNIPLDQGHMKTRGDQSPMPESKRYQQLIGALLYLAVNTRPDISA
SVTILSQYNKEPGTADWNEAKRVARYLHGTKGAELRLGKRGGAPTLIGYADADYAETRLDRKSFSGYTFQYCGSTISWSC
RKQSCVSQSSTEAEYIALAEATQEGIWIRRLLEDFEERPQEKTVIYEDNQSYLKLLDHKRFNHRTKHIDTKYHFVKDIKE
KQLMDYQYCPTAEMIADMLTKPLGKIKLRGFAEMSGMINF
>Copia8-PTR#LTR/Copia 38-4183 via tfasty with ATCopia21_2-4495, 2 frameshifts and 1 stopcodon. [Populus trichocarpa]
MSLSQNLTTQPTSHIENPLIALNITAQINEKLIPSTFPQWRAQFEALLIGYDLLDYVTGLSVCPSSDGTSQSALKRTHWV
RQDKLILSAILASTSTSITPLIATTKTSHEAWKKLNHMYASRSRLRAMQLKEDLTLIQKGNRSIQEYLHAVKALADEIAL
IDHPISDDDLTLYILHGLGSDFREIAAPIRAREKSLNFEELHDLLVGHDSYLRRMESATQQLVASANYTNRKNSFGNSFQ
KNQKPNGFSRNQGPHKENRYNNKPFGRPHTTQKRYxPKCQFCDQIGHTAKTCPRLNSHAVTANCTSTANATDNKWLMDSA
ASHNISGDLNNLSIHSEYDGTDEVMLGDGSGLTVSHIGSLTLKSKHKNFILKNTLCVPDISKNLIYVHHFTAQNNVFIEF
HPSHFPVKDTNSGVILAKGACENDVYIFPNTLAAALLPMVANVHEKTSLDGWHKRLGHPSSKIVHNVVRQFSLPFTTTQK
STLCPSCSINKAHQQPFRSTSLSSTAPLNLIYTDVWGPAHCVGLDGSRYYLIFIDHYTKYMWFYSMETKSGVAKIFPQFK
NLVENRFQSKIQTIYSDNGGEYMSLKPFLSLHGISHFTTAPHTPQQNGVSERRHRHLVETGLTLLHDANLPLIYWPYAFH
TATYLINRQPTPLLQNISPYQVLFGQQPNYLKLRKFGCVCYPLTKPYNKHKMEPKSRSCIFLGYSLTQNAYRCLDPRTQR
VYISRHVLFDEDQIPLTESVSSFLSPTTSPISTVPNSVPVTVLPSSPPVSSVDAPAMVTAPPGNPPVSTSSNLSSQLVLS
STGNTLTPTNPTLPPSIHRINHTPGPRPTTQPATEPQITSHHPQPSISRPHPMTTRSMNKIFRLKQLNSTTKHPMPDTIE
PTCVSQAVSEPHWREAMSHELTALMRHGTWELVPPPKHCNPVGCKWVFRVKRKSDGTVDRFKARLVAKGYHQRPGVDYTE
TFSPVVKPATIRIILSIAVMNGWGLRQLDINNAFLHGALSETVYMLQPPGFKDSSKPGHVCRLRKAIYGLKQAPRAWYSA
LKNAILQFGFKSSKADSSLFIFRHKSIICYFLVYVDDLVITGNNSDFVNSIVKQLGCKFSLKDMGPLHYFLGMEVIPTPG
GLFLSQHKYIHDLLSNTNMLGAKEVCSPLSTSTPLKLNDGTASFDSTEYRRIIGSLQYLSLTRPDISFAVNKLSQFMHKP
TQTHWAATKRLLRYLKQTIFHGIRLISHTHPSLTTFSDADWAGNLDDRTSTSAYIIFLGSNPVSWSSKKQRAVARSSTEA
EYRALANAASETVWIHSLLHELGFNLNTTPSLLCDNLGATHLSHNPVHHSRMKHIQIDLHFVRDLVHRGAIRVRHVHTQD
QLADLLTKPLSKQRTEHLRSKI
>Tad1-9_BG_pol#LINE/Tad1 1638-5396  [Blumeria graminis]
MPVRDHNLTELHTTAATISFLCANLGRGDPATDIILQSAWDSGTDVLLIQEPWTQLKDGHWLTKSHPGFDRHLPPRVAAN
SSRPRSLIYTRKGIEFQQQAVCETSPDLTAVKVEGVTFVSVYRAPGADLLPLLSWAPSGPTVIGGDFNAVHTDWQPMATR
LHGDGQVLTEWMFEHGMDLSSTPGVPTHDLGNTLDLVWSNTGALADVSIELDSTSDHRTLAGDVPRPNSKARAVIKTGQP
VRVTDDALEDFAKVLGRWAHGIGMQPMVSISAVDNLANKLVQIISDAIRATGRRGSAKKGRTAPWWTLECAQAKREYRIF
RDEESRKDFRRKVRSAKRQYWRRKFSEATTDVDMYRMARWAKPQPTSAAPPLQTPDGFVSDPGKRALLLRDLLLGRFTSQ
NDVDAEDFEPGRGNLPWVSSVTDEEAKWVTTACQNKAPGADAISVRLLRTAWSSIGHAVRVLFEGSLRLNHFPKAFKLAE
VILLPKPGRNLSTAKGWRPIALLSSLGKGLERLVARRMAYTALTHKAVPQQLFGALSGRSANDLVSCVIHDVEHAMKRQK
KAVLVTLDVQGAFDAVLHGRLLQRMNKMGWPKPAISWIRSFLQERSARVRHEDGVTDPVFLECGLPQGSPLSPILFLFYM
AEVVGGSSWRFGYADDVAILGIGSTPTEAAVAVQREVDAVLGWAANNAVSFDPDKAEVVYFVGPRSRGHDLPAIRVGTRD
VQASDDIRWLGVHLDRGLTFESHVAKWTSKAMRLVQHFRRLTLCTQGPRPDLLTTVIRTVVLPIAMHAAEVWCPGPTRET
YRGVTRNSYKRQSKVIDQTSAFGIRVALPTWRTMPITALRRETGIPPAHILLEERRLKIAARIRRLDEYHPLRLRATEST
DNARHRLGLKTCNKTRLGFDRVHDSRVQRMYRLLPEAELPPPLRPPTPPQPIPRWTSKKEAAKFIREWLPTLPPDCLCVY
SDGSGASTDKVSWAFVTFISGTGRVIEQSGSGKITNAEVYDAEVHGALAALEAITASKRDRGRSAIYFLLDNSAAVQALL
TGTTGSSSWRIQKFVKLAAGSAAPVKIGWIPGHEGLAGNEIADELARRELNSSDNSRTTHGVMTLATSGRKARELARQMV
TDWWHSNRPRHYADLELEMRRKKPPELSLPRAVYARLIAARTGHGDFAAYHRRFNHTDATLNCECGREKSIGHLVQCRKA
LATWRLKSGKRRAPALELMLGSRGWQLFRDYVQESGIYAEASRGMAGIPVTRR
>Tad1-8_BG_pol#LINE/Tad1 1578-5375 via tfasty with I-1_AF_pol, 2 frameshifts. [Blumeria graminis]
MSTKPISLKILSINVGRCSSAHEIALQLAFSTNTDILLIQEPYIHKDLTRKITRKHPSFECFNPIDDWSIRPRVLSYSRK
NNSFSYSQVRPASILAHGAEDTLFLFVKSSDKFSTLIVNIYNAPLGAINPGAGVRFLLSLNNFVFPEQTILAGDFNLHHP
NWHPSRRGSPSPQANVFTQWLQSKNLSFISEIDKPTHTRGNVLDLIFASEKLCAGNASASVQQDLDVTSDHFPLFVEVPC
PGQKHQSETRLRFRTTDQKKFITILCPLLSEVHTLNSSTPENLNNRAEELIRILYESYAGSSKRKLPHNRGQPWWNDSCK
EARNIYREKVRAGNSTPTDKRAFRKVTRKAKFHFFQKVVDNAANAKDAFNITKWHKSKGQFRSPPLKDLLAPSSPLSQET
EEKMDLLARNLLTNQSEVDDIPLDSPAVAISSLPFPKLTTKEVSKAILSAGNTTPGNDQIPTAILRLAWPHISATVLDLF
QKCLDIGHHPKVFRTAIVAIIAKTNKADMTSPRSYRPIALLSVLGKGLERLVAKRMSWIAIKFKVLSRQQFGALPLRSSV
DLTTCLTHDVETALSKGEIATLATLDVKGAFDAVLPGRLVRRLREQGWPAHLCSWVTSFLTKREIRIRLDGKIDKPRPIS
CGVPQGSPVSPILFMLYIAPIFKIEGLQKSFGYADDIAVLEISASLQENSNKISATINDALAWGTKEGIIFDPGKSELLH
FSRKHRDKGVSPHVHTSQFSISENPQKPFLKWLGVHVDKRLTFKQHITIQAAKALKVAHALRCIGNTARGIPPRLSRQVV
ITCVLPIAHFAAATWWPGKTRMKRGKKTSNGVGSHISTLDKVHAAAARTVLPVFSTTPTIALLREAGISPAEITLDDITR
RAALRMRSLDPYHPLPSRARNLMPFPPLTRLARSCRDIPHSENFDPLLNPPWEAEEEKQIAFKRIGAPSGPSQTRANIFS
DFLTTIPKSDILVYTDGSKLPDGNAGGGFVIFQLDRKISSNAFPLGSNKEPYDAEAHAALRGIKAAVSLPSARFASNLWV
FLDNIEVCRRLVVSPIVTSSSQSTFIEIQKVAKTWQTRHRLPHTAEGHVKIRWVPSHSRIEGNELADSEAKKGALVPYLD
PPKHSTTSLKKWNITLRTQIRDIWWKKNIPASYAQLEIKHAPLFPKELLLSRKALGIILAARTGHGDFTAYHTRFNHAKA
RLTCLCGSPKTPTHFLFCRILRRRRGGRPAGSINKLLPDLIGTSEGAISMSKWLENSRFFEEICPR
>Tad1-19_BG_gag#LINE/Tad1 66-1397  [Blumeria graminis]
MAPAVASSSSTPSNPGGQLHPSLLGIVNAMQKAEQQRKERLGIAQEFLELIDSWAKSKGEKQAAAVVATLMEKITPVITA
FAVDQAEAASLLSKKPPTMASTPKPVAPRNITAVEDHSHALPSKPQDTSSPWVTVARKAAKLPTPPSVQVPRRPAPASSP
KPQTIPKEDKRLFLRLRKDHHWHKLSPVTIKKIITEKAGIATSAITSMYPVRSGIALECASDALRDTVMGIAPLLQEDNT
VIEAASKWTSLIIPHVPLYIRTLEGSIPVTNEMVKNECQAVCGATPIQVRPTETKLGQYSTSWIVHFQQKPENTKFRLFD
ESGPAIPFSRRRPIEQCQRCWGFHTTRSCTRSQRCGRCGGTHETLECQAKVLKCSNCAGPHHSNEGSCMARPRRQNGIIL
PRTPAELHIIRERGHRDYHAALAYSERKGKAVETVIAQDSTMSC
>Tad1-20_BG_gag#LINE/Tad1 511-1944  [Blumeria graminis]
MAPSNAARDESLERGSEVEQESNIPTIPEEMAVLVENEKRRAAEAAANISICASTINVVENHLSPMLTGEHKNFIDSFRV
YLRASIAQFIQVGPGATPPVLPKVPAIPQAKPTTSTPVETHRPSAAAPSGPKAKSWAAIVGKDTRREGAGARDKESRTKL
PSPPAVKIVSRPSQGLKEPEGKKKDGLYLRIPKNHDWRSLSTAGIRVAVISKFGCSPTNIDKILPTAAGFVLIAKDEDAR
KQLLSCAGRLPQDINLEPARNWASLMLPNIPVHIVSLDGQVTISESHIVSEIERVTGVTPKSVRRHGKSKYGARYRNWVA
FFESGSAPRTGFRLFDDSGRAATVPKRQTQAICKRCFGYHSTGGCSRTPACRNCGSLMHSERECLAAARCRNCGGPHRAD
SRNCLARPTRAGALTKKQLVTIRNAGNREFEAVRRAKAAADKTRAASLANARSGSASSPDSSALPPASVTPTDATPRL
>Tad1-19_BG_pol#LINE/Tad1 1400-5164  [Blumeria graminis]
MLGNPSTKAPKDKYNTVHFHQVNVGRGGENTDIALQQAWDAGAHVVMVQEPWTRKKEGGFITKSHPGYNSHIPFGGTDIR
PRAITFTRKGSHATQFFPPLSGPTSDYCFVKMGGLTFVNVYRAPGTSGTLEPLLRWEIRGLVIVGGDFNSVSQHWQPLAT
NQYGNGNQVMEWATAHDMDLVSIVGEPTHRDGNVLDLTWSNTAAIASVSKRYHCTSDHSTIEGTVLNPTVSDLSGIVKNI
RVSDANLKEFSRCVSQWTKSGPLDSVVNIENFTNDLLQALGDALKIAGKVPAIESGRTGPWWTDECRTEWQEYKAARDNP
DLAKEARKSFRAVVRKAKREYWKRQVEAVTTDAQVFKLMRWAKPRPAAEPPPLQIDENRWLSDPRERASALRDTLLARFS
GENDISIWENGQEERIPWDTELSLDDVTSATVSVNDTAPGADKITVRLLKACWSHLGPLVKDLYQACLKIGYFPAAFRVA
EVVLLPKPGRNLSTAKGWRPISLLSSLGKGLERLVGKRMAWLTISHQVVHPQLFGSVPGRSAVDLASCVIHDAEAAMRSG
KCAAMVTLDIQGAFDAVLHNRLLKRLREQGWPRSLCRFIQTFLCQRKVQVKYRGGITEEKILECGVPQGSPLSPLLFMLY
IAVLFDDHGLTSRFGYADDVAIVRIGNTAADAISAAQDDLDSLILLAREHRIDFDPAKSELLVTGGGPRKKINAADLSIL
VKDRRIEPSPHIRWLGVWLDTQLNFKHHVQKWTGKANRLVHFLRHINGVQRGAAPGPLIRAVHACVLSTALYGAEAWWPG
LTRITTLRDKEVGTGVGWHISLLDKTIMKAIRVALPAWRTTPNGALHREAGIPPASIILQQKMLRSAARMRRMDIWHPLA
LRAAEDPKETIRRLGLRSGQRDRLFRQPERYMTRLQMSVRRVPTAEGPGKLYFPRGTPASIPCSRENEARSGCIKRWLAS
RPANTVFAFSDGSSSGPGKSAWGYVVYQGGKLVASGSGPLPGAEVFDAEVVGAMKALKAAIEVGEDLLICILLDNQAATQ
ALERGRSNSSQSAVDKFSSLRHNKRVEIRWIPGHVGIQGNEEADKLAKSALGAPNNRSLTSAAPSGEDQDLTFAALGRWI
KLRSQELVEEWWQKYRPKRYKDLDLFMRCKRPPELALPRWAYHRLIAARTGHGDYADYHRRFKPEHEDLKCVCGREKRPW
HFSECRPALLRWRSYEKMAPPGAREMIGEKGWQKFIQFLTTSRCYSLPKNEQGGR
>Tad1-6_BG_gag#LINE/Tad1 68-1579  [Blumeria graminis]
MPDPPPPPIPPLSVGASKTLTETLIEATSAANTRTQEATLLFGGVAAALDNVTRGTAAPTIPPHLQKSFNDFLTRMQAVA
QEFFESHVRGVPIPATTDRLPISQPKPAAHARHSYAHVAGKPKGNAALSTPQKPKPAKPQKQAKSLPLDDRLFLRLDENA
TERLVSAYSLLIQLRNFLGENSALLKEVQHIPSGLALRPSSEAALPRLEDLFVQGIGEGRFPGVLGIEKAQNLDSYLITS
VPRTFTTLDDNNRLVKEPITSELVLKELKEEKGFNPTIVVETKGSIASPYDPSARFIARFPIGSHLPRRFHIFGMGINCR
KLSKKINIAQCGRCFQWHNQRICARAPRCRLCGSVEHTEETHTPCGPHQHPCPPRCIHCHGPHPADAPECLLRPRSNGIK
LTKGQVAQIRSTSAAARMGLCTTVGCIRDRTTPAIVDEEMTDTPSGQTLTYKHATNPSNTPSGPLMLEGSPSSTQLVRTT
SPPPSRPTVFLGNRYSVLDVENEV
>HaTad1-2_BG_gag#LINE/Tad1 115-1755 [Blumeria graminis]
MPSVRKKRPNAKLDNTRVRPRALEKLPGLAQSSKCAEMGQAVSKGKEKALPTVTVPDTDMIGSVEIVEEIPQRVSIPHGI
GESSKPPPTSSIPSENAAPKAASKLTSQPKAATKADCPPELRPIVEAERRRAAETAANLALCSAAISGVEATLLPLTNGS
NRQFVDSMRVYLRAAIAQYMATGQASTPPVLPPRPANPPPRAPEARSIQIPAVPVLPVKSTWATVARNGLQQKAVPTKKA
VPRPAAKASKKEAPKAKVDKRLFLRLEKEHPWRQLSPAGLWQQLQSELDCFLSDACSIHRVRTGFAILTGNEKKREELLD
AAPKFSDFGAKLEEASNLVAFRIANVPATIKTLDCTHTVNADWVSLEIYRKTKTFPYKVLPHGTCRPGAPYRNWKALFDR
NDAPRPGFRILDEAGMATIHKPRPQIEQCKRCLGFHATRGCSRAPACWNCGSNMHSEAECKALTKCRNCGGPHRSDSRAC
LARPSKSGPVPKEQLARIRQIQQGEFAKVARARAAAKKAEEAIIAAAKDVSMAEATGFGALGSEEEV
>CgT1_pol#LINE/Tad1 1702-3255 N-terminal fragment. Partly in gi|7493944|pir||S72620 probable reverse transcriptase - anthracnose fungus retrotransposon CgT1  (fragment) [Glomerella cingulata]
MPTPTLTSTQSLRFRPASPQALRVAQCNVGKISPAHTALLELCWADQIDIVLIQEPWIGYRDKMQINTHPGYNSYVPVDF
WNSRDTRPRVMTYTRKSLRIRIQQQRPSPSRDILWVKAGDLTIINIYRPPGEPINHTTTTLLDYQPPEGTLIAGDLNARH
PSWEPGSSSRNRGDDIAEWAEGYNLKFIGEAGAPTHTHGHTLDLTFSNIPFAEAYISAHLHPGADHQAIIIIIPINKSQE
QWCQSSHPIVSDSALLRLADLVQMGIPALPTLGDIPTPAEIDSLATQLVSLLSTAIQAVGKRRTNQGSRAPWWTEECSEA
HRAVIEARRQQAQEPGLAVPPPILEEQKAFLTTVRKAKRAYWAAKVEEAGTNQNLYQILSWRKSGLAVKAPPLLVDGQAI
NNSYDKAQALRKAILERFDAADDLPGNPFTVPMVIRRLIPWQHTVSIEEVRQATLTKATTPGIDGITTKLLQSIWGLIAT
PVQKLFQACVQTGYFPRTFRKAEVVMIQKLGKTDFSK
>Tad1-3_TMe_gag#LINE/Tad1 155-1618  [Tuber melanosporum]
MASSGEAMETDRSDSPESPTPGGGHTGEDPGFTQIKKTLCNFLSVHGLPKNSPAAKVITLLDEEDVGTAEMTTYLLILGL
AQQVKVLTVEVQNMAKTIQDIKNKGELIREGQTKTVKILQKTPVEASKSYAQATADPGTQTPKKGDKKRKADQGLTPPKQ
PNPKTPKGDHETDKEDQGWEVKGSKKKLKGKHSAARKLFATRTQAVPLRHQARDEARISIAIADTLTKCKCKAPINLQVS
SNRWNGTVLLTTLAGFDSSHYTKYLEKMTEALNSVVEDGEVQFLAFRRAPTDVDVLIHGVPFDAIPEDEKELSADVKSAF
KLSHDIDVSSAKYLKLREGDRERKRATSIIVRIPEAAVEKITSRVLFLGKYKEANVMWQANSTTQCTRYWKFGHPKIGCK
QTNDTCPICSKDHTEESHKCYQTACRGYKKKIPDCCSMTPAKCPACGGPHSARDADCPEKVRVKEQAKAKYDQRMAPLAN
AGTLGTQN
>Tad1-5B_TMe_gag#LINE/Tad1 7-2829 Big one. [Tuber melanosporum]
MSSGERALYETPKFRLDDPEDEDYNPPTAGTRRRTRSASPAKRSATPALGPQFLRAINVDEGXKKQIVPALPGLPLDVHH
GCLAVPPPMSLPSTIEATPPPPSPLVTEDVLPTSEVLARDTPMDLEEGRNSEATGLGDSIHAPSPAMASSPPDLDREWTS
PEVQLFSSREASHDAQTPLEVQLPNTQPEEADAAVAQADSIMAGVCEMLDAGRTPSPGPRSGSIIGSMLEGLEDIRSGNT
QPLLSSESGSIEDDTVHDVRTWMNNGAAFGNEGPEGGVNYWSRVHLLERAVKALTDIVGKQGEEIETLRGKLSPRRRSSS
VVSGNTPFTVLGTTPPPAPVKGKETATAAPTAKASFTEVVKRMAYVPKPPAAQKEQTPSARPTSAASSHQSSSGSSSSEG
GVTLRMARGGEGKSVHWEKEDGEEEEKRRGRRRGRRLSGAARRRRKAASGSGSEKEMATPAKTQGRNTDRQEPAPIAGTP
ATMPAQSGPAAMASIKVTAALMRQEYRRVPQGPPDPLNSVPAPPQSSPTPDARGRHITMRFATRKQVALPEGVGIEAIRN
RINTTFSNQGKIRGNAPYIRAGHVRPEIGCIFLTLAGHSVTELGNRLDKARLDLLRELSLPEFEFQRNLEKVKIFVSGVP
LADTGRGSIWRVEGWTGSAAFDGLRTDLEQSNTGVVTVSRPDIMGSIHAMRQANATTCGIRFVVERNEAIRERLAEGKIW
LRGGARNVQVFEEHRPLKVCGKCLETGHFEATCGRPPRCRFCFGVHFSQEHMCSKLGCPGGVGQACGHTRRQCWLCDRMD
HFTGYEQCPGVRSSPPAPSSSSPNQGVAPPTEPAKEPEQQGSQTRRARRRRRSRGRSPTPRLVEISSDEEDEGPRQKSDK
AKGKEPERPSPSPSPARGILKTTATSKPHREDTFWTARDQDSGAPYASGPCGPSGSVEAPF
>Tad1-5_BG_pol#LINE/Tad1 1562-5386  [Blumeria graminis]
MKSRRHRSIGPLRLLQINVCRGASSHELALTFANEERFDIVLIQEPYIYTDRQRQITKFNSNYECFTPTDDWSSRPRVLT
YIRKGAGLQVCQQRPLPLISTAARDLLFLEVTAPSGASLLVVNVYDAPAGSNNGGEAVRALLNLTFPGHSNRIFLAGDLN
LRHTRWQASSQTTSPLAEPFIEWTDRLNITLISESDMPTHTRGSVLDLAFASSPLILAGAESSIIPELDVTSDHLPIASL
IPWDSRFQEPIPRLKLSTLDERLFLSLLELEIARLTDLPANPQPNSLDLFAQSICTALQNAYRASARRALGKGTGQPWWN
NDCRNAAQAYRTTRRSSTDQNAITAGKKLLRAAVRRAKRKFFQDKIDQANTAKDVFGMVNWHRTVGSFRTPPLKDPTNPG
APPANTLQEKRDVLARNLLQNASEVADVALDVPSVGTASLTLPDLTPAEIKDSVIKAGNTAPGEDEIPTAILKIGWPLIE
TRVSSLFRGCLQAGHHPACFKTAVLVMLNKPNKPDRSSPRSYRPIALLSTLGKGLERLIARRLSWIAIRHKIVASQHFGA
VPLRSATDLTTCLVHDIETALNSKLTASLLTLDVKGAFDGVLPGRLVLRLRDQGWPDNLVRWVASFTSNRAAKIRLDGST
GPEFDVSCGLPQGSPVSPILFMLYLAPLLHMGTPKRRFGYADDIAFLHTSQSLQENAENLSRNLQEAIQWGLEQGLKFDA
DKYELQHFSRRRCDQQPGNTPMVRAGPITVSENTARPYTRWLGVLFDKKLSFKWHARTLASKALKVSHALLSLGNTTRGA
PPHLLRHAVDACVLPIAYYASETWWPGRSRQGPKARISNRVDSLLQQLSKVVLTSARATLPVYRTTPTAILHRESGLQQP
EIALDSRVLTATVRLRRLDPRHPLLRRANRVLSLQRPTSRFARRVLSLPKSEQINSIAMPPWNPRECREAAHSRVAGPNS
GSADENRQVFLDFLQTIPFGDIIIYSDGSKQLNGLGGAGFIGYQGGVQVLHKSIALGKGVEVFDAEVKGALEGAKSALAL
PTAKFATDLWICLDNLEVATRLSSHFSGSSQAQFDEFLTLTPKWQERSRLAHTRRGQIRVRWVPSHTSIIGNEAADKAAK
DGCHLPTSDDLVFSYAGLKRWANESTTQATGKLWRTLLPQHISYEKLGIISAPPRPKELTLSRATLGRILAARSGHGDFA
NYHERFNHENAPKYCRCGRRKAPLHFFFCHIGKRRSRLMQGPPSKMIPFILGTHEGGRKFGEWLQETRFFTEICP
>88184604_Cgl_pol#LINE/Tad1? gi|88184604|gb|EAQ92072.1| hypothetical protein CHGG_00307  AA 369-end Has a deletion around original AA 1350 (nov c. 980) [Chaetomium globosum CBS 148.51]
MSRTLRLIQLNVRKQGVVHESLMNDKDIQNATVLAIQEPHARRIHGRLFTTPMGHHKWIKMVPSTWREGRWAVRSMLWVN
KDVEAEQVPIGSPDMTAAILRLPGRRVLVVSVYVPKQDPQALRETCDNLHKTIMGARRDAGTTVDVVIAGDFNRHDQLWG
GDDVSVEIKGEADSIIDLMNEFALRSLLRRGTKTWHLGDSNTTIDLVLASAELAETTVKCAIHRTKHGSDHRAIETVFDT
LVPVPKERDRLLLQNAPWKEIKTEIARALDATPSGGTVQQQTDRLMSAVLETVQTLTPKARPSPYAKRWWTTDLTQLRRI
YTYWRNRARTERRAGRSLVDLEEMAKAAAKQYHDAIRQQKKKHWDDFLEDNSNIWKAAKYLKSSDDIAFGKVPQLVRADG
TATADHREQEELLTTFFPPLPERIEDEGARPQRAPVAMPPITMEEVERQLFAAKSWKAPGEDGLPAIVWKQTWPVVKYRV
LALFRASLEHSTLPSQWRHAKIIPLKKPGKDDYSAAKAWRPISLLATLGKLLESVVAERISHAVETYGLLPTNHFGACKQ
RSAEQALILLQEQIYTAWRGRKVASLISFDVKGAYNGVCKERLLQRMKARGIPDELLQWTNAFCSERTATIQVNGYTSEI
QSLPQAGLPQGSPLSPILFLFFNADLVQRRIDSRGGAIAFVDDFTAWITGPTAQSNREGIEAIIRDALDWETRSGATFNV
QKTAIIHFTRTIYKTDAQPFTIKGQIVKPQDHVKILGVLMDTKLKYKEHIWRAASKGLEAAMELKRLRGLSPSTARQLFT
CTVAPVVDYASNVWMHACKNKLAGPINRIQRVAAQAIVGTFLTVATSVAEAEAHIASAQDRFWRRAIKLWTDIHTLPYTN
PLRRNTSQMRKFRKSHRSPLYQVADTLKDIAMDELETINPFTLTPWENRVQTVTNEPTTTRRNANDDIICIAVSSSARNG
LVGVGGAATLPASAYGTPKLGTFFLYAWLKGAAPEVQMPRMRSTTLNVARSKRDSSNHLPDKVGAHSKRVDAALPGKHTQ
LLYDHLSHKEAAKLAQLRTGMARLNGYLHRIGVAPSDQCACGQAKETVDHFLFRCTKWTAYRRKMLECDDQETPLLAEDI
AIKREFDEALAAEEMQRCLRCKERWFDIKLMADGVCKHCHDKDDKKRQEESFFFSAENKLDFGPVPPQLPQLKPLEELFI
ARVHVSVNVRGQQYKYRGHIVHFLRDVGKVYSELPLLPKDLDIVILRPRGSENAEQMDRQFRNRFRVQPEEDGEVVDEAE
VPNMLVHDSELNQLQERVDGGAAEVNAANEQVPLQPVEPQAAHQLKMPSIRRTPLDEFNQTHALLSLACPTLFPRGVADF
VEPRQRKISYQDYIQHAMKWEDGRFAEHHSFRFICAKHSDEAAGKGSKSILRQQESPHTSRIYRETPSRAIIRQLQALDA
VGGKDPSEESIGI
>ATCopia23#LTR/Copia 39-4058 Wised via estwise with ATCopia31 protein [Arabidopsis]
MSEKDGLSIPKFDGDYEHWAMLMENLMRSKEWWDLIEHGVMQPERNVILTGAQRTELAESKLKDLKAKNYFFASIDKATL
KTIAKKDTAKDIWESMKTKYQGNKKVQSAQLQRLRRNFEVLEMKEGDTIDGYFSKVMVVANDMRNLGESMPDAKIVEKIL
RTLVEKYTYVVCAIEESNDITELSVDSLQSSLLVHEQKLSRHGDDERALKIEGRWDSSGGRGRGGHQNRGKGRGGYQGRG
RGSTNFNKETVECYKCHRLGHFKFECPEWEKTAHYAELEEDVLLMAHVDIQRAGNDEVWFLDSGCSNHMCSTREWFVEFD
STFKHSVKLGDNRKMSVEGRGSLRLIINGAAQKITKVYYVPKLKNNLLSVGQLQQKGLRIIIEDDVCEIWHKQQRRLLMF
STMTKNRMFVIQAAVRGDKEKEEGNCLQAVSDEKVEELWHRRLGHLNQGGMQSLSEKQMVIGMPMQTKTNAAELCDVCMK
GKQNRLSIPKKSSWRASRGLQLVHTDICGPITPTSEGGKRYIINFIDDYSRKCWTYFLSEKSEALRVFKEFKVAAERELG
VSLICLRSDREGEYNSNAFQEFCKEHGIKRQLTAAYTPQQNGVAERKNRSLLNMTRCMLFGMSVPRRFWPEAVQYAVHIL
NRSPSKALADATPEEMWSKHKPSIDHLRVFGCVGYALVPYEKRIKLDEKSRKCVMLGVSKESKAYRLYDPETKKIIISRD
VQFDEKLRWNWEEDQQEDSPKWEESDADSEKTAENAENEEREAEEDEPAAVTDTPAAVTDTPAENEQAPVRGTSGRTIQP
PVWMKDYVTGGKSLFVIDGDEVMALYTAAEDPESFEEAAQHEKWRKAMEVEIKSIEDNNTWEIIELPEGAKVIGVKWIXK
TKYNEKGEVDKFKARLVAKGYHQRQGIDFEEVFAPVARWDTIRTLLAKAAQKGWKVFQLDVKSAFLHGELNEDVYIEQPQ
GFEVEGEEEKVYKLRKALYGLRQAPRAWYSRIESYFAKEGFKKCYCEHTLFVKAERGGVLIVSVYVDDLIYTGNSDSMLA
DFKASMTKEFAMTDLGLMKYFLGVEVIQDDKGIFIKQQKYAAEILERFGMERCNSVKNPIVPGNKLSKEGAGAEVDPTTF
KQLVGSLRYLTATRPDLISSVNLVSRYMEHPNEQHMLAVKRILRYVQGTAGFEIXYWRGNKEELVGFSDSEYAGDIDDRK
STSGYVFMLGGGAVSWASKKQAIVTLSTTEAEFVAAAHGACQGIWLRNVLEEIGETLEEGTVMYCDNSSTIKLSKNPVLH
GRSKHIHVRYHFLRELVNDGVMQIKFCPTHEQLADGMTKALKLATFVYLREKMGVCLKEE
>ATCopia14#LTR/Copia 123-4680 Wised via estwise with ATCopia26 protein [Arabidopsis thaliana]
MATNSATSSALITSTTNRRTISPYDLTSGENPGTVISKPLLRGPNYDEWANNICLALKARKKFGFVDGSIPQPPDDDPDF
EDWIANNALLVSWIKLTIEEKLSSSLSHINDSHELWTHIQKRFGVKNGQRVQRLKTELANCRQRGLAIEAYYGKLTQLWG
SLADYQNAKTMEEVRKEREEDKLHQFLMGLDDTIYGAVKSNLLSRVPLPSLEDAYNALTLDEESKNLSRTHEERSDGVSF
AVQTNSSRNFSDNRGSSVSCTICGRTDHIADNCFKKIGYLDWWEHNPKSNSRNKNGNNSNKGNSTSGGVGRGTTTSSVGS
MTGKSFGTGQVNHETTSNQNQLQSFGVNTALSASTSSLTSADRVGIIGLSNDEWDSLVQTLANRKLNSKEKSGISFLESW
IIDTGASNHMTGTLEFLIDVRDMAPVLIKLPDGRFTMATKQGRVVFGSALCIQDVFFVDGLQCHLISVSQLTRERSCVFQ
ITDRLCLIQDRITKTLIGAGEQENGLYFLRGVGVAAAVHSMDSSSMEVWHSRLGHPSSKAMDMLKFLDFSTKFDTKACEV
CIRAKQTRESFPLSYNKTNVAFELIHCDLWXPYRTSSICGSKYFLTILDDYSRAVWIYLLHSKQEAPTQLKNFVALVERQ
FSTKVKTIRSDNGCEFICLRDYFNQHGIIHETSCVGTPQQNGRVERKHRHILNVARGLLFQANLPIEFWGYCALTAGYLI
NRTPTEILGGKTPFELIYNRPPPMNHIRVFGCLCYVHNQKHGGDKFAARSTXAIFVGYPFGKKGWRVYNLETRAVTVSRD
VIFQESVLPYTIELPNQPSLSSSLSNEEEAIGLTNGFDDNEPESSHSPTEPDPPQSPTEPESSPPLTEPEXPQPQTDPVD
STTHTEPNPQTHPVDSPSSSPKSISRPDQSEDINEAYDNSLADHDSAIDDVTDNSTSSSSTDTNSNSEPEQLGFGFRKKK
PPTKLADYVTSLLHNPHPSSTPYPIDNFISSSQFSDKYQHFLLAITSGVEPKSYQEAIEDENWRYAVKDEIDALEENGTW
TVETLPAGKKPIGCKWVFRLKFNSDGTLERHKARLVVLGNNQKEGIDYSETFAPVAKMITVRTFLQQAASLDWEVHQMDV
HNAFLHGDLDEEVYMKFPPGFRTDDNTKVCRLHKSLYGLKQAPRCWFAKLGSALKQYGFEQDYSDYSLFVLATGITRLHV
LVYVDDLIITGTSIHIVNEFKHYLSSCFHMKNLGPLRYFLGIEVARSPIGMYLCQRKYALDISSETCLMGVKPTTFPLEQ
NHKLSLAQDGSFSDPTRYRRLVGRLIYLGNTRPELSYVIHILSQFMNDPQNAHWNAALRVVRYDKNSPGQGILLRANTPL
TLTAWCDSDHGACPITSRSLTGWFIQFGDSPLSWKTKKHDVVSRSSAEAEYRAMADTVSEILWLCELLPTLGIKVNTPIT
LHSDSLSAIMLAAXPVFHARTKHVRRDVHFVRDEIIRVVIATKHVSTTTQLADIMTKALGRQQFEDFLVKLGICNLHTPA
>ATCopia32#LTR/Copia 63-4133 ATCopia32B_pol > 92% identical. [Arabidopsis]
MSTARIEVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEALEEKKKKARSAIVL
SVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQA
ILLLTALPKAFDQLKDTLKYSSGKSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKGKKG
KSKKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQVVKGESSGGKGNLAEAAGYYVSEALSSTEVHLEDEWILDTGCSYHMT
YKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSDGLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGILRI
KAGNQVLLTGRRYDTLYLLNWKPVASESLAVVKRADDTVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIYGK
AKRKSFSLAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRR
VKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNRTIMEKVRSMLSDSGLPKRFWAEATHTTVLLINK
TPSSALNFEIPDKKWSGNPPVYSYLRRYGCVAFVHTDDGKLEPRAKKGVLIGYPVGVKGYKVWILDERKCVVSRNIIFQE
NAVYKDLMQRQENVSTEEDDQTGSYLEFDLEAERDVISGGDQEMVNTIPAPESPVVSTPTTQDTNDDEDSDVNQSPLSYH
LVRDRDKREIRAPRRFDDEDYYAEALYTTEDGEAVEPENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQRI
IGCRWIFKYKLGILGVEEPRFKARLVAKGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQEDLELEQLDVKTAFLHGELK
EKIYMSPPEGYESMFKANEVCLLNKALYGLKQAPKQWNEKFDNFMKEICFVKSAYDSCAYTKVLPDGSVMYLLIYVDDIL
VASKNKEAITALKANLGMRFEMKDLGAAKKILGMEIIRDRTLGVLWLSQEGYLNKILETYNMAEAKPAMTPLGAHFKFQA
ATEQKLIRDEDFMKSVPYSSAVGSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVKWVLRYIKGTLKTRLCYKKSSS
FSIVGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVE
IFCDSQSAIALSKNNVHHERTKHIDVKYHFIREIISDGTVEVLKISTEKNPADIFTKVLAVSKFQAALNLLRVKSE
>ATCopia48#LTR/Copia 15-4418 Wised via estwise with ATCopia47 protein [Arabidopsis]
MERRSMELYTVPQLNISNCVTVTLTQQNYILWKSQFESFLSGQGLLGFVTGSISAPSPTIPVPDINGVTTDRPNPEFDVW
FKTDKVVKSWLLGSFAEDILSVVVNYVTAHEVWSTLANHFNRATSSRLFELQRRLQTLEKKDKPMQVYLKELQTIYEQLA
SVGSPVPEKMKIFAALNGLGREYEPIKTSIEGSIDIPPTPKLDEIMPRLNGYDDRLQAYAANSDVSPHLAFNTVQANSVF
YTNRGRGQGNRRFGGSRGQGSFSTRGRGFHQXSHTMXSSSNASAERPTCQICGKHGHHALNCWHRFDNSYQLDVLPQALP
ATQITDITDHSGSEWVTDSAATAHITNSPRHLQQTKSYAGSDSVMVGNGNFLPITHTGSTSIGSTSGKLHLKDVLVCPLI
TKSLLSVSKVTKDYPCIFEFDCDEVRVRDKETKKLLLQGSNRDGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHV
LQQLSSTKSILINKHSKAICEACQSGKSSRLSFSASSFVASRPLERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRYCWFY
PLKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFTSKVFLNHLQEHGIQQYISCPYTPQQNGLAERKHRHITDFGL
SMLFQGKVPQKHWVEAFYTTNFLSNLLPHTALTDAKSPFELLNKKKPDYQALRIFGCACFPTLRDYAQHKFDPKSLKCVF
LGYNEKYKGYRCLLPTTGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPLLSAWQQSFMPQTTASSTASATATSPFNAAE
IQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEESSECTESINLLPIGNSSSSLANRTDNADTSPLQEAATETN
SSTVQEAAESTTSSTMQEPASNQSTHPMITRSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTE
AQTWSLVPYTSDMNVLGSKWVFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRMVLHVATVMDWEVK
QMDVKNAFLHGDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQAPRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGN
DLILLLLYVDDMVLTGSNSATMIKLLEDLNTQFRMKDLGQMHYFLGTQAXISRELMMFIHSXGLFLSQQKYAEDLLTIAA
MDECSPMPTPLPLQLHKVPHQEELFANPTYFRSLAGKLQYLTLTRPDLQFSVNFVCQKMHQPTVSDYNLLKRILRYVKGT
LSMGIHFSKHSDFQLRVYTEKDPAFSLRAYSDSDWGGCKDTRRSTGGYCTFLGTNLISWSSKKQPTVSRSSTEAEYRSLS
ETAQEMTWICHLLRELGIPLPVTPELYGDNLSSVYLTANPAFHARSKHFEFDYHYVRERVALGSLVVKHIPAHQQIVDIF
TKSLPYEAFCNLRFKLGVDLPPTPRLRG
>ATCopia44#LTR/Copia 59-4105 Wised via estwise with ATCopia10 protein [Arabidopsis]
MAMSSKVEIKTFNGDRDFSLWKIRIEAQLGVLGLMNTLTDYSLTKFVPVPKSEGKKPETDEESSPTEEVPDLIKIEQSKQ
AKNIIINHITDAVLLKVQHCVSAADMWATLNKLYMETSLPNRIYTQLRLYSFKMLETMSIDQNIDQFLRIVAELGSLQIV
VAEEVQAILILNSLPVSYIQLKHTLKYGNKTLCVQDVVSSAKSLEHELAESKESERGSSTVLYTTERGRPQNRSQQQGNK
GKGRSRSNSKTKVTCWFCKKEGHVKKDCFAKKRKLESEGPGEAGVIIEKLEVSEALNIGDRLVKDMWVLDSGCTSHMSSR
RDWFSDFEENDGTTILLGDDHTVKSQGQGSIRIKANGGSIRILKNVKYVPNLRRNLISTGTLDKLGYHHEGGDGKVRYHK
NNATALVGRLINGLYVLDGETIMSESFNAEDTKSSTELWHSRLGHMSLNNMKILAGKGLLQKNDVKELEFCEHCVMGKSK
KLSFNVSKHITEEALGYVHADLWGSPNVTPSLLGMKYFLSIVDGKTRKVWLMFLKSKDETFDRFCEWKELVETQVXKKVK
VLRTDNGLEFCNSKFEDYLKKFGIERHRTCAYTPQQNGVAERMNRTLMEKVRCLLSESGLEEIFWAEAASTVAYLVNRSP
AFAVDHNVPEELWLNRKSGYKHLRRFGSVAYVHQDQGKLKPRALKGVFLGYPQGTKGYKIWLLEEMKCVISRNVIFHEDL
VYKDLQLKEKSEQEERAEKITQAEKTVSEIVSNQQQVGESSVAGGTVDVSSSDDESEYFEPEGEAPASSERLSNYQLARD
RVRRQIRAPIRFSDYSQFAYALMAAEDMDSSEEPSCYHEAKETKEWEKWNAGMGDEMQSLLKNYTWDIVDHPKNQKIISC
RWLYKKKPGIPGVEPERYKARLVARGFTQRKGIDYDEVFAPVVKHVSIRILMSIVVQEDLELEQMDVKTAFLHGDLDQPL
YMEQPEGYVADEQKDQVCLLKKSLYGLKQAPRQWNKKFNSFIMDQNFIRSGHDSCVYIKQVSDEEFVYILIYVDDMLIAA
KSMTEINKIKEALSTGFEMKDMGAASRILGIDIIRDRKAGTLRLSQTGYLEKVLHMFNMTEARPVSTPMGAHFKLASVVE
EEECVDTDKVPNSSAIGSIMYAMVGTRPDIAQAIGVLSRFMSKPGKIHWTAVKWLLRYLKGSTDLNLVFTREKDFRVQGF
SDSDYAADLDRRRSTTGYVFTVGGNTVSWKSNLQSIVALSTTEAEYVALTEAVKEALWIQGLLTEMGFKQEKVTLWCDSQ
SAISLAKNNTFHERTKHIAIKFNFIRDVIEEGSVEVLKIHTSQNPADMLTKGIHVQKFESALEFLKLLR
>ATCopia8B#LTR/Copia 15-4285 Wised via estwise with ATCopia8A protein extended with ORF [Arabidopsis thaliana]
MEHRSMELYSVPSLNISNCVTVTLTGKNYILWKSQFESFLNGQGLLGFVTGSIPAPNQTNVVSDIDGSTSASPNPEYXTW
FKTDRVVKSWLLGSFSEDILSVVVNCNTSHEVWISIANHFNRVSSSRLFELQRRLQNVSKRDKTMDAYLNDLKNICDQLA
SVGSPVTEKMKIFAALNGLGREYEPIKTTIENSMDTQPGPSLENVIPKLTGYDDRLQGYLEETTISPYVAFNITTSDDSY
RNSYNRGKGKPNRGRSSFSTRGRGFHQQISSTTSSSSSQPGGSSVICKICGKMSHSALKCWHRFNNSXQYEDLPLALATM
RITDVTDQHGNEWLPDSAATAHVTNSPRSLQQSQPYHGTDAIMVDDGNYLPITHTGSTNLASSSGTVPLTDVLVCPSITK
SLLSMSKLTQDFPCTVEFEYDGVRVNDKATKKLLLMGSNRDGLYCLKDDKQFQAFFSTRQRSASDEVWHRRLGHPHPQIL
QXQVQNHSISINKTTKSLCEACQLGKSTRLPFISSSFTASRPLERVHCDLWGPTTITSVQGFRYYAVFIDHYSRFSWIYP
LKLKSDFYNIFLAFHKLVENQLSQKISVFQCDGGGEFVSHKFLQHLQSHGIQQQLSCPHTPQQNGLAERKHRHLVELGLS
MLFQSHVPHKFWVEAFFTANFLINLLPTSALKESISPYEKLYDKKPDYTSLRSFGSACFPTLRDYAENKFNPCSLKCVFL
GYNEKYKGYRCLYPPTGRLYISRHVIFDESVYPFSHTYKHLHPQPRTPLLAAWLRSSDSPAPSTSTSPSSRSPLFTSADF
PPLPQRKTPLLPTLVPISSVSHASNITTQQSPDFDSERTTDFDSASIGDSSHSSQAGSDSEETIQQASVNVHQTHASTNV
HPMVTRAKVGISKPNPRYVFLSHKVSYPEPKTVTAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKWVFRTK
LHADGTLNKLKARIVAKGFLQEEGIDYLETYSPVVRTPTVRLVLHLATALNWDIKQMDVKNAFLHGDLKETVYMTQPAGF
VDPSKPDHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLILLLLYVDDMVITGNSSQTLTSL
LAALNKEFRMTDMGQLHYFLGIQVQRQQNGLFMSQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRS
IAGKLQYLTLTRPDIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYSDSDWGNCKQTRRSV
GGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTLLRELRIPLPDTPELFCDNLSAVYLTANPAFHAR
TKHFDIDFHFVRERVALKALVVKHIPGSEQIADIFTKSLPYEAFIHLRGKLGVTLSPTPSLRG
>CAULIV-1A_SBi_gag#LTR/Caulimovirus 525-1712 [Sorghum bicolor]
MHKSLHSKNNTKNELQNIVQLHQDNSHKPSIFDFDINVIEVDDPELQTYCYVVREKEFQIDKELLRREIALPKNKAKKER
YFKNVDQPFRLKIRELWHKEMIEQKKNIFFFDWYENSQIRHFEEFFKPDSKQKDKIEPESDDDKITMIEKVSKDWKTTSG
KQVEAVHPPFEPIQSEAKVESIKACPLKSISKVTYAEPIRFEPKGHMVEQQNQQTEHEEAIVVDGIEPSKSEVKENLPSS
IHPNAPHTQILIPLFIPQMIFPNFKHEKQKAIRSSILEEPPDGLGKFAVDKNINQIYGHSKRVTNSLTTTVQIAMINYPS
NIIWDLQFKMPYITRNPERLTDYQMFKSHQITMSTKTGIIGRNINAAYRFDISFWWDHYLNETQRKSRAKATKIYE
>ERV3-1_CHo_pol#LTR 2038-5601  [Choloepus hoffmanni]
ESQRLLISEAHREPLVNLKVGPYQEEITFLVDTGAARSSVNHLPKGARLSGSSLAVSGVKGEGFKVPILEPTNICWENNQ
IIAPLLHIPEAGSNLLGRDLIIPMGLDLEVRNGRIEVLALLTEEDEKDIKEEVWVKEGNRGGLRIPPIKIKLKKEGEVVC
QKQYPIPLKGRQGLQPIIEGLLRDGLLETCMSPFNTPILPIQKPDGSWRMVQDLRAINQIVQVRHPVVPNPYTLLSKIPY
HHKWFSVVDLKDAFWACPLDPESRDLFAFEWEDPFNGRKQQYRWTVLPQGFTESPNLFGQELERVLEKFPIPPEITLLQY
VDDLLISGKERQAVAQATKNLLNFLGDQGLRVSKSKLQFVAREVKYLGHLISEGKRKIHPERIQAIVELPLPQTKRELRK
FLGLVGYCRLWIDSFASRTKGLYQKLLEEEPDNIEWEEVEIEALNELKQALVQAPVLALPSLEKPFHLFVTVDKGTALGV
LTQIWGGQRRPVAFLSKVLDPVSRGWPGCVQAVAATALLVEESRKLTFGGALVVSTPHQVRTILSQRAGRWLTDSRILKY
EAILMEKDDLVLTTDHSLNPASFLWKGPEQVETPEHDCLDLIEYQTRVRPDLRDLPLHSGERLFIDGSSKVLEGERHNGY
AVVDGVTCEVKEASRLPNKWSAQTCELYALNQALKLLEGKDGTIYTDSKYAFGVVHTFGKIWEERGLINSKGKELVHGEL
VKQVLTNLLLPREISVVHINGHQKGPTFEAKGNRLADEKAKEASLCPPLKLMVLIPSIPEEFGVPTFSAKEVKELEQLGA
TLNDQGKWFLPDGRQMLNKQIMREVLAVLHQGSHWGVQAMCDVVLRQFGCVGLYTVAKQICERCIICQKINKKVLRKQVQ
GGREPGLRPFQSIQVDYTEMPPIGRLKYILVIVDHLTGWVEAYPLSSATALGTSKVILEQIIPRYGLVENIDSDNGSHFT
SRVLQNVMRSLGVTWDFHTPWHPPSSGRVERMNQTIKKHLSKLVLETKLPWIKCLPIALLRIRTAPRKELGISPYEMLFG
LPFPRRTGELPSLDTKDLFLKNYILALSSTLSSLRHRGLLAQTPPLEFAAHRHQPGSWVLIQSWRESKLQPIWEGPYQVL
LTTETAVRTAERGWTHYTRVKGPVPEPDDKYPATQPESWRVTPTSDPLRITLKRQQLKEHTRREEGLD
>CAULIV-2_Mad_env?#LTR/Caulimovirus 6737-8356  [Malus x domestica]
MEYRGPSSANSTRPQGRRVSFNGMMMHHQPPPFSGFQNSMSRPASPPVPTFNFNGNIVEGIRNPTLRYRSRVPGLSDRQQ
VLLDNFWNIQIKQPSMRLGHEKLIRALEQEFDSFNFNFHQSQQHIHSLEHNLQVISRDHESLLGKFTKMNQELQSLRMQQ
KASDTLKRELKIGLEIDQHKNKGKEVIEPIEQEANEPIEEIKIELLEEDVEMEQHQSNEQHQVLSDKEKQEKYESFLRNI
SSDLILDDVLLEEISKAKLRIMPTDMQNEILSRASQSMKELQLQLQCALYQSIFDPKPGMDIITKMYPPCLCDSTENCIC
KPEVSVAVARINMRDFKPWHFSYEHQKKHNVVEVTPALLLEFGYLDKIFINRISQLESFPEKLIKVAEDYLERWKEICIS
FISSPPDWYVHMHKEKARHIAMINEESFRLXPISSHRWTPSYKDILKFRGIQMFALDEFEDFRYDMVLVAEEEEMYIYSK
TRISHQPYWKPQNFKEETAEIYYKVKEDRERDAELVEGDEQYWNNLTEEELHNIDNMMEA
>Angela1_AT#LTR/Copia 1312-5291 via tfasty with BARE2_HV, 1 frameshift [Aegilops tauschii]
MAHVVLNFNAFLEKTKLKDDGSNYTDWVRNLRIILIAAKKDYVLEAPLGEAPIPENQDVMNAWQQRADDYSLVQCGMLYS
LEPGLQKRFEKHGAYEMFEELKLVFQAHARVERYDVSDKFFSCKMEENSSVSEHILRMSGLHNRLSQLGVNLPDDAVIDR
ILQSLPPSYKSFVMNYNMQGMEKTIPEVYSMLKSAEVEIRKEHQVLMVNKTTKFKKGKGKKNFKKDGKGVAAPGKPVTGK
KSKNEPKPETECFYCKGSGHWKRNCPKYLADKKKAGNTQGICDIQVIDVYLTSTRSSSWVFDTGAVAHICNSKQDLQNKR
RLAKDEVTMRVGNGSKVDVIAVGTLPLHLPTGLVLNLNNCYLVPDLSMNIVSGSRLIRDGGYSFKSENNGCSIYLRDMFY
GHAPLVNGLFLMNLERDVTHVHSVNTKRCKVDNDSPTYLWHCRLGHIGVKRMKKLHADGLLESLDYESFDTCEPCLMGKM
TKTPFSGTMERATNLLEIIHTDVCGPMSVEARGGYRYVLTLTDDLSRYGYVYLMKHKSETFEKFKEFQSEVENQRDRKIK
FLRSDRGGEYLSHEFGTHLRKCGIVSQLTPPGTPQRNGVSERRNRTLLDMVRSMMSLTDLPLSFWGYALETAAFTLNRAP
SKSVETTPYELWFGKKPKLSFLKVWGCDAYVKKLQPEKLEPKSEKCIFIGYPKETIGYTFYLRSEGKIFVAKNGSFLEKE
FLSKELSGRKVELDEVIVTPSEPESSAARENVPVVPTPTGEEVNDDDHETSDQVTELRRSTRTRSAPEWYGKSVLEIMLL
DNGEPSNYEEAMAGPDSDKWLEAMKSEIESMHENKVWTLTDLPDERRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQV
QGVDYDETFSPVAKLKSVRIMLAIAAYYDYEIWQMDVKTAFLNGFLKEELYMMQPEGFVDPKNANKVCKLQRSIYGLVQA
SRSWNIRFDEMIKAFGFTQTYGEACVYKKVSGSSVAFLILYVDDILLMGNDIEFLESIKAYLNKCFSMKDLGEAAYILGI
KIYRDRSRRLIGLSQSTYLDKILKKFSMDQSKKGFLPVLQGVQLSTAQCPTTAEDIEEMSVILYASAIGSIMYAMLCTRP
DVNLAVSLVGRYQSNPGKEHWTAVKNILKYLKRTKDMFLIYGGDEELVVKGYVDASFNTDPDDSKSQTGYVYILNRGAVS
WCSCKQSVVAGSTCEAEYMAASEAAQEAVWMKEFITDLGVIPNASGPMTLFCDNTGAIALAKEPRFHRKTRHIKCRFNSI
RESVQNGDIDICKVHTDLNVADPLTKPLPRAKHDQHQDAMGVRYITM
>CAULIV-2_Mad_pol#LTR/Caulimovirus 2141-6727 [Malus x domestica]
MELFRKKGKEVVRAEDIYPNEEEAQEFIRRGFERTQKNKYNLYQLGLFENRSRIVSSISQHEVSCIDKEVTLNLISKEAV
THLRKSHFSQIHIGTILIGIAGLTRAQVGTKALVYIYDDRWDNHQQAAIATAEVDLSSNLAVIGCIPNYVMTINEFSKYI
KVSIRTKNYNMKGEYKNLCISLMYIGKVSDRYNHKFNLEFQNLVQTFGSKHVNMIEAKPVDNSFLEGTQWTLPNLQVAXN
RQPDKVQIYETSTGQATIRFSNYKQLEKIEEDESEIENESIHMAFDNLDINLVEQNFDHIVDKLIEDIDHLDEEQYLEKY
KTYDLGLHKISDEEMKILILEIGVEHILGSKEYNNLLELKAECNPAEESSTSGVENPGHASRTDQQFLRPTNEQYNEKAK
VDYIEESMIKPRKNRIPYLRGLEQINIAGNILNLDNVDPQDWERTIERWEKGCVHAALMLDFSNSQNMLDYFEHTLDGLV
FYYFQSWKVQNPEQHQAAKTHFNIDGFVTLIKQEFLDHNRLDGRSEQEQIRAIRNLEQLQICDLQYIAEYTTDFFKYLGR
TGRISDINLLDTYMTKIKGPIGEKIWNEWQKHPKKNDIAIGPRIQHVYDILRQECSQIKAKRQIRKQFYMSCKNIDLPQQ
YGCHKKNKHKKIYKKKYKSYKPYKQHKNFSIRPSRTYRKRKYIPKQFRKRSGRPWIRKYKAPKDKSSCKCYSCGEAGHIR
PKCPKLGKQSKEKVHLMELFKLEEDEDIQSIYSLDDLSDNESIYSIESINMIDSDSEDSSSTNSDLEEYMCAFIEEQHEE
EYKYINLGWPEKCHKCSKLVANKYYNTYSILCEKCYSNRLLEVNSAESQESTEILGNIVHSIEKPKNSSLITINCEIELA
KEHKIQTTAMIDTGSTKSVIREELVPEKYRQKLAKPVRITQFDERPVYLTHCINNEFIKVEKQQFNLPLTFVSPVGSYPF
ILGLNFLKSLQGFLFMNPNITFFKRGITITDQSNTVEAYKSISIEESSGQDSYHLENSKENDEHNNVEEFDEDIFEHEYP
ILEEGTRIEILQLDRPKSLEELLQLAEQTRIIGEDPQLHWSKNKILAKLDIINPDLTIKTADMPCSLIDKQEFEQQIKEL
LNLKVIRPSKSRHRSAAFIVRKHSELKRGKARIVYNYKRLNDNTYEDSYKLPNKDELINKIQESKYFSKFDCKSGFWQIR
LAEESIEWTAFTCPEGHFEWLVMPFGLKNAPSIFQRKMDQIFKKYDNFCSVYVDDILVHSKNRNEHRKHLEIVLQEFINN
GIVISKNKIALEKQDIEFLGMYIKSGTIQLQDHIAKKVLEFPDKLEDKKQLQAFLGLLNYARNFIPDLGRKIAVLHSKTS
KTGQKYFNSEDIKLVQKIKEEITKLKPLTLPLDDSYKIVETDASSLGWAGILYQKKHRESPKSDEQVCRYSSGKFSDVQS
RLPSTDLEILGIINSLEAFSLFLHNEVFTIRTDCQNIVSHYNKIHANKQAARRWVNFVDSITGNGFKPIFEHIKGNDNTL
ADILSRLIC
>Waldo-4_AAe_gag#LINE/R1 891-2285 [Aedes aegypti]
MEQIIDLDGESSGGNEDAIVFARSGKMQRSPVIPQTVAASTSRCSTPSELPGNQRDAGFLSQVLTPKSGSSTAQDDRQHD
KSELSEVKRKVNELYEFVKTKNNVHLRIKQLVTSIKSAVTAAERGQKELRSRAEKAEKALTSVNATAVEQETPRSNPTTR
TEKRTRDTPGEEEDPKKQRSGNECVSEQNGSGWRTVKGQKEKNTARKERKRQKKEPKKKEKQRSPRERFRGDALVIEASD
KTSYAAILRRVREDPELKELGENVVRTRRTQKGDMLFELKKDPSIKSSACRELVAKSLGNEASVRALSQEAVIECRELDE
ITTEDDVRGALLSQCNLEEAPQSIRLRRAYGGMQIATIRLPVAAAKKLVEAGKIKVGWSVCPLKLIPRETNPVERCFKCM
DFGHRAINCKGPDRSEHCRKCGEKGHVGRDCLKSPRCMLCKVEEGNAHTTGGFKCPKYQKAKAGQ
>Kiri-4_CQ_gag#LINE/L2 299-1345 [Culex quinquefasciatus]
MAKNRSSDEICDVCNRGAPPGSKGKRKPKTITWIGCDACPRWFHPLCVRISDSQMEEIDDYQYFCESCAVRGCLIPKPQP
VMTASGGVSELKKVIQELSAELTKLRAELDAARETNKKQLDRLRNVVNSNTRSEVTTTRLASDLSEKLEKIERGAQLANT
CSQTINSCRLAINKIPFKVGENVRQLVADVLTLVGCSDEQASITDCFRVPAKPSKWSDRSLTPTIVAVFSSLEARQKVLR
KYFERHKDAALRNLKHGPALDYRFTVNEVLSINTFRIRNHALRLKQRGAARSVFVRNDKVSVLLPGQVRYTPVNSVEHLQ
ELVSSGSSSDSSSLFFDALSANVSASSRC
>Kiri-3_CQ_pol#LINE/L2 2668-5496 [Culex quinquefasciatus]
MASSTTGNASANQYITRAVVNAIFDNTKLNICQINVQSLCARNLVKLEELRRVFKDSKADVVCFTETWLDTSITDSLIAI
DGYNLIRNDRNRHGGGICVYYREGLQCRVVEKSKSVRDTSSTEFLLLEIECLNDKLLMGVYYNPPTVDCSEILSAQISKY
SMKYKACFLIGDFNTDPNRSGAKSKRFNDVLSGLAFHFANREPTYFYQTGCSLLDLLLTDSPNQISKFNQVSMPGISHHD
LILASLEFSFTIPENRSYYHDYNNINYAELNEAFSRINWANYLNCAEPDILLEFFNVNMLNLFTQFVPLKEFKVRKNPWF
NAVIEKAMIDRDLSYRNWKRSKSIEDKNHFKILRNRVNSLIEKAKSDHSNRILNTNVPSKKLWSNIKNLGIASKTKSPVV
CNSSVENINQYFSSNFSPSQGDFNSNLAAVDGFHFRAVEDYEIVNAISSITSNATGLDNIPIRFINLMLPLILPIVKHLF
NTIITTCIFPRDWKKIKVIPIKKKSSSCDVTNLRPISLLSSLSKAFEKIIKYQLTEHVNRYDLLHPLQSGFRKGHSTETA
LIKVHNDVARCIDRRGVAVLLLIDFSKAFDRVSHTKLLNKLATSFGLSRPAVLLIESYLRDRSQSVFLNGFHSSFVDILS
GVPQGSVLGPLLFSLFINDLPPVLKFCSVHLFADDVQIYLCSDANINIADMQRKINSDLLKVQSWSEKNLLAINPAKTKA
LLISRLKTPPNPPELFLKNELLEFVDHACNLGVIFRNNLDWDKQINSQIGKIYGSLKQLSLTTRFLNSHTKLKLFKSLLY
PHFIFGDFIYPNATVESLNKLKVALNSCVRYVYNLSRYHRVSHLQKNLIGCSFSDFYKYRSCLTLFRVMHTGEPNYLSSN
IIPLRSSRSKQFLIPQHYSTYYSQSLFVRGISTWNLLPLNIKTSMSIPYFKRKLLAELNNPNQ
>Kiri-9_CQ_pol#LINE/L2 1546-4377 [Culex quinquefasciatus]
MLANNGLAPNTNQSSSIPRIVMNCAMESDKLNICHLNVQSLCARGLSKLEEFKQCFTNSKANIICVTESWLTEKIEDELI
SLDGYKLVRHDRNMQTRGGGICVYFKTGINCKILSCSKNESNNITEFMLFEMEIAGEKVLLGVFYNPPRVDCATVLSQKL
ADHSLHYNKIIFIGDFNTDIRKSCTLTDNFLNVTDTYGLSCINTLPTHFHYGGSSMIDLLLTNDPDFVLKFNQVSASCFS
RHDIIFSTLNLNTSNTSNFSLFRNYNKINFQALDHAVASINWNLLYSITDSEIALDFFNVNIKQLFENFVPLCKYIPRKN
PWFNNDILKAMIERDLAYGLWKADRSTLRFDEFKRLRNRVTNLINIAKSKYVANRLNTAESSKVLWKKLKVINVKSKQPR
VEQFLNSNNEINYHFSSNFTQDNTPPHTLLPNNNGFKFSTVDINDVILALSSMKSDAIGLDQIPLKFIKLILPLIVDKIT
YIFNLAISTSKFPRAWKSAKIIPVKKKPRSLALDNLRPISILPALSKAFEKILKAQIQTYLNNFDYLHRFQSGFRSKHST
TTALLKVHDDILKVIDRKGVALLLFIDFSKAFDRISHSKLINKLSLKYNFSIEAAKLIQSYLTGRSQSVLSGGTLSIPID
IISGVPQGSILGPILFSLFINDLPTVLKNCMIHIFADDVQLYLASNSXPVTEMARLLNDDLCEILRWSTRNLLPINPSKT
KVMFISRNRGVSTLPEIIFEQNVIEYVTEASNLGIIMQNNLEWDCHINGQCRKIYNGLRHLRMTSSMLPIQTKLKLFKSL
LLPHFMYGDVLFLNAAANSINKLRVALNACVRYVYNLSRYDRVSHLQHNLLGCSFNNFYELRSCLTLFKIINTSTPRYLV
DKLLNSRSTRTRNYIIPQHRSSHYNESFFVRGVANWNQLPVSIKNIHSPIEFRKECINWFGMRN
>L2-2_NVi_pol#LINE/L2 389-3101 via tfasty with CR1-8_DR_pol, 1 frameshift and 2 stopcodons. About 60 AA missing at N-term. [Nasonia vitripennis]
LARPPDNAPGXGSGLRAGFLNVNSLRARIEIVRNFLTERPSFDIFGFAETWLGPIVDDSLVSIGGFSIIRQDRNVNGGGV
ALFVRNGLKIKKLASSDTMGLGKPGIPEYLFCSVQRGDSPPVLLGVIYRPPKIPMQKDSDLFDVLRDLCDEFSHKIIMGD
LNSDLLSDxRCYYQASVELSLQIIRHGPTHHTSSSHTWIDLIMTDETTRSWTLRMSGCLVSASIVSxMSARHLDLLSCCD
WTAMNSIETDLEGALCILNNNIKLAIDELAPLKTVCPRRKYAPWSGPELLFDEVLRLTNEVDMRSAQERESFLRQLSDAL
DENRNIWKVMRHLGLLPGRKEEEFFGFTPGELNEHFAGVSVSPLENIDNATDTILLASEEGFTFSPVSMSDVVLAISHFS
SQARGVDGIPCGVIVKALPIIGEFILNLFNCSFAQGIFPSIWKQAQLIALRKTSAPSNVKDFRPIALLCFLSKVLEKIAH
AQITEYLNKNHILDPFQAGFRKHHSTQTALLKLTDDVRMAIDKKKVTLMLLFDFSKAFDTISPSKLLSKLRQLGFSRAAL
LWIKSYLQGRSQMVISNKNGTSEWLETNLGVPQGSVLGPLLFSLYVNDLQNILDGNTIKHLFYADDLQIYLHTNKDNFLD
GVARLAEAARLVSGWAESSGLRLNSGKTKSIFFGSMKNVNDIKSWNLPGVPLPDGVIVPFSETVVSLGVVLDSKLTWKPQ
VDAITKKVNKALYSLRFIRGCTTETLRRRLVETLIQPHIDYCTVTILDASNEQRIRLQRLSNSCVRFIFGVRRDEHISPY
RRRLEWLRTDSRRLYFEAILLYKIIRIGEPSYLASFFNKHKPRPSSRGVPPELSIPTVSTETGARAFQVQGARFWNSLPS
TLRNLPSLASFKGALRRHLLATES
>L2-1c_Cis_pol#LINE/L2 832-4155 [Ciona savignyi]
TSRMPPSKRKTCLICSKLIRINQNFVFCDSCHSNSHLNCLKNTHLSLNANNIKKNIYXSHCNWLCNTCSSESHLPFHEIS
DSELSLLLSPSTTAQINLDPSKLNSFFNYLDDDVLDKEGNEETTIGCPELYITSNQCKPHMFESEQNFSTLSLNIRSLAN
PHNFSKLEALVLSLKFKPEVIAITETWIVGNQTGQYSNLPGYVFVSNSRTEHRGGGVGMYIRSDLDFHVKECLSVMEERV
FESLFVTFPNLLPQPTPNSKSSLICGVIYRPPRSDSESNSFFLENLLKLLEKIETRHSQCIIVGDFNYDLLIGNNNHINN
FKDAMHENCYQSIINKPTRITDSGATAIDHIWTTIDSSFIRAGILTDSISDHLPVIMALNTKTDNKSSIIQSKSRIFSQS
NMSHFNTAIQTMELDSIYYESDPNIAYSKLMTLYNTKFDSSFPLVKITSDKSNTWFSEDIQKLNKIKQKLHKKFIQKQTE
DSKLKYHSARNIYNRKILESKKAHYRKLFDFNKKNMKATWRSINNLLGRLKSKNPRSFFVDGVRTSDPKCIANHFNNYFS
NVASGLVKQIPKSXCHHTDYLGTQSPSSMFLFPTSPSEIKTIIKDLKSKSSSGMDQIPTKLIKSTPENILLALSHIFNLS
IQSGEYINAFKIAKVIPIFKKGKPTLINNYRPISILPSFSKVLEKIIYNRTSAFLTRNCFFNNQQFGFRKGHSTSDACNV
LVNIVNEQLEKKKSVIGVFLDLSKAFDTIDHGILLSKMSHIGIRGVALDWFGSYLSDRKQIVDFNGVLSSHMNPVKLGVP
QGSILGPLLFLIYINDLPNCLKHSQTIMFADDTSIFTPGVNQSVIYKNVNDDLGRVSSWLCTNKLILNIDKTKYMYFSNS
TKPVPQPPPIVINNYPIEKVHSFKFLGLTINEHLSWKPHMLTLIKKLNTNMLMIRKIKHLIDRPSLITLYHSLIVSHITY
CISTWCYGNNQLLNKLQRICNKYIRMIFNLGKQENTVRIMQQHSFLTIHDMHKLEILSIMHKCKHHNVPPSILQCIKLKP
MTSGMSTRQKSRFIIPYCSKTTTQQSIKYIGPKLWHQLPTSXRDIKSFNKFIKVVKQHLLDDPHPLP
>Kiri-2_DEl_pol#LINE/L2 909-3692  [Drosophila elegans]
MQVSTNNATASSLLRILCKQKVGLKIVHINAQSLVRKMDEFRELFVGSNVDIVCVSETWFVSGYSDVPFECDGYVLHRSD
RLEHAGGVAIFVSNKYTSKLIKSNPIEGRVEYLFLEVVDPSSKSKMLICCIYRPHRMTEYTDLLESVSDISVAYEHVILA
GDLNSNMIREQSVQNDFNSLGLSLVNCQLPTHFTSTCSSLLDVFFVSEPSKILLYDQLCVPAFSKHDLIFMTYDFISDNS
TRFFNYRDYKSINLNNLLTEFDNYDWTNIYDLTSPQDQLLLFNSNIRRLFEHCVPLRTKTQKPAVQPWFNLEIKKRICLR
DNAYKRWKRYKTESLHIIFKRLRNLVTNSISSSKRRFYNDKFANAETPGQVWKDLRSLGIGKQNAMAKSDLDVDALNKKF
SEVPSVIPTHNLYLNSTTSCDIIFSFMCVRPCEVLECILKVKSNAEGLDNVSPKFIKMLLPKLICYITHIFNTVFTTSMF
PDCWKIAKILPVPKSKNEFRPISILPFLAKAFEQLVALQMQNHLENNNLLSCKQSGFKKHRSCTTAILKISEDIRQKIDD
SKVTLLTLLDFSKAFDSINHEILCTKIRTLYNFSSSAINLIRTYLTNRVQAVVSGSQKSSFLPLTQGVPQGSVLGPLLFS
LYVNDLPKCISVCDVHLYADDVQLYVSRPLSRISECIRISNNEIKQINDWADANGLRLNPSKSKCILIHKKSIDFSCLPK
IEVKNVEIEFVKRATNLGIEFNSTLTWDDHVNKATGKAYGMLRQLSLSRNLIPQNIRMLVAKTCIIPTLFYGIEVFGSCD
AISMRKLKVAFNSIARYVFNLNRREHITCYSNKIFELSLESWIKLKTLLFLRKLLTKKEPQYLIEHVQLASSARTNNIVC
KRLKLAMTEKHFFIQAVRYWNNLPNNIKTIRNETHFKNVLINYLKGTS
>Crack-25_BF_pol#LINE/L2 3-2153  [Branchiostoma floridae]
KTQAMVVFKRTYRDFCPEDFLKDAEMVPWHLVLEESNVNDALHLFTVMFNDIADQHAPMRKRAVKSNPVAWLDDELRELM
CLRDEAKRESVASGLQSDFEVYKKLRNTVVNLNRKKKAAFHKTKLEESKGDPKAMWKTLNGILGKGSKRSTGVVEQDGIY
LVKAKDIAEHFNNYFLNKVNILRQDMHQQSNDALLHLIEENIMADKDCSFAFQQVRREEVYKLLIDLPEGTAAGLDNMDN
KLLRLAAELVSTPLCYIINLSFATSVFPREWKKAKVVPIPKSATAPFCGANSRPISLLPATSKIMERIVSIQVSDYFQQN
SLMSNHQHAYRKNHSTCTALLHMVDDWHHSIDQGSLVGAIFLDFSAAFDLVDHSRLLQKLGCYGFSESTTTWMASYLTGR
QQCVHINGTNSSFLELPCGVPQGSCLGPLIFTIYTNDLPLAVSQATADMYADDTSAYTCDPAIETISSNLQTEVNNICNW
VRTNQLFLNASKTKCIVLGSKPKMSKRPKLALTVDGKSIEQVTEVKLLGTTIDECLTWNSQTKSTSKKMARSLGMVKRCA
KFMDQKLLNIVIECLVLSHIDYCSPVWSCTTKRNLNLLQRVQNKANRLLQIRPKWKSVNTRLLLNTMTTFRRIVLTNEPV
CLSSKLSFVKKQHNYSTRFASGRTFKLDKPRTNSLKRTFRYRATSMWNRLPIALQSALSSRSFKTGLCDLVSCLEK
>Crack-12_BF_pol#LINE/L2 1-2235  [Branchiostoma floridae]
QILILACAQAGREACGTRWCEYRSYKQYTQQSFIDGLKSVHWDTVLDCTDVTDAWDAFKDIFLNVADKFAPLCKRRVRDN
NTVAPWMTDRVKNMMGRRDAARRKAIKTKEGKDWEVYRVIRNQTTSAVRKAKKIHFAEAVTEAKGDQSLMLKIINAFTGK
SKGKCQVQNLARPDGTNISDPSEMSQEFNSYFATCATSLADSMPTSQKDPLRHIPEPSTEFSFESVDESTVLSELLRLKA
KKATGLDNIPSKLLKDSAPVIVRPLTHIFNLSLATGEVPSDWKTAKITPIYKSGNRTNVANYRPVSVLSVTSKVLEKLVG
NQVSRYMAQNNLLTVYQSGFRRNHSTASAVLKIVEDIRSANNSRQVTVALFLDLRKAFDTVNHAILLSKLKKLGFDRDAT
KWFTSYLSGRSQCTSLQSQCSEMAAVTCGVPQGSVLGPLLFCLYVNDMPQVLEKCKIHLYADDTAIYYSAGTMKECEEAV
SQDMKRVSDWLIDNRLSLHHDKTKSMLFGVPQKLRHVGTTVQITDGVNIYEQVNTFKYLGITLDPSLQWSAHITNITKKI
FSGLSAMRRAKPYVTKEILHTMCQTLLLSHLDYCGAAWLPSLVQGKKTQMLQLDRLLFRAARMITGYTLRDHVPVGKLLA
EAGLVSVRNRAEKISLATVFNAVRGKAPLYISDMFRWKSPPTIRARTRTAVKMFADWDPHQLNCPVASLKCYEGSLKSFG
PQLWNKLSLKHRKTLGLVKFIKEL
>Kiri-1_CQ_gag#LINE/L2 301-1125 [Culex quinquefasciatus]
MSTKRTPPINPATPSGSSNNSNQNKRYRSSSAGSVSPGASPGPLTLEAVMKEINMQFTKTFDRIDTISNKIDTVKAELNE
QLSSVSRDFNSFKAECADKFKFTDDAMCELESRIDGISQEIGGIENRNELIVSGVPHIPGENVAAYFKDMWKQVGLPENP
APLVDVRRLKTGTQGDGLILLQFALRNNRDDFYSCYLRKRDLKLQHLGMNSTRRFYVNENLAVPARKIKKAALELKKSGK
LSSVYSKKGIVHVKRTADQQPGTAVHSENQLQQYS
>Kiri-2_CQ_pol#LINE/L2 1272-4118 [Culex quinquefasciatus]
MPVPHNHTNTNIPGAVLNAALLPGKLNICHGNAQSLCARKNSKLEEVRAALSSHKVDIACFTESWLTASRNNRSIGVQGY
SVVRNDRVYKRGGGIAVYYRDTMSCTKIFNTELTPESADKTECLALEFRLNGFKVLLVVVYNPPDNNCAPFLEEKLTSLT
LRYESVFLVGDFNTDLLQASNKRTQLLSAFESFSLVPYGCEPTYYHDTGCSQLDLLVTNDSDKILRFGQVDFPGLSQHDL
IYVSLDFDATQPVTVNTYRDYVHFDADALKFATVSIPWRNFYAILDPNHSLEFFTERLKVVHDTCFPLRASSRRNAPNRW
FTADVQRAILERDLAYKDWRTAASDVKDLKRRTYKTLRNRANSVIERAKKTFLGGYLDANIPSKLLWTRVKSLGVGKDKS
SQPCDHDPDEVNRMFLSSFTPAETRNDQHARILPSQYNFSFRNVHYWEVVNAICEVKSNAVGMDGLPIRFLKIVLPLVIQ
QITHMFNLFINTSTFPNLWKHAKVLPLKKKSNSNDVTNLRPISILCSLSKAFEKLLDQQMANYIDNNHLLTEHQAGFRKG
QSVKTAALRVHDDLASTIDKRGVGVLVLLDFSKAFDTIPHNKLLDKLETEFNFSSTALNLMNSYLRRRKQTVFCDNRRSD
CAEPTSGVPQGSIIGPRLFCCHINDLPNVLKHCAIQLYADDVQLYIRGVGPCARDLIRMVNQDLQNVADWSNRNRLLVNP
AKSKALFIQSANRRAALVPDLRIEMNGEQIQWTERASNLGFIFQSDLQWDGLVSQQCGKIYAGLRTLYSCTPTAPVATKL
KLFKALVLPHFLFADVFFVRLSSSLFNRLRVALNCCVRYVYGLRRRDHVSHLQKNLVGCPMLNLFAYRSCLFLRNLLSSQ
TPPALYQKLILSRSQRLRNLVVPANRTAGYACTMFVRGVVHWNALPPAVKNSLSDATFKRGCKEHWNEV
>Kiri-1_DPer_pol#LINE/L2 1505-4297  [Drosophila persimilis]
MVHNMNRLPTNSRILIRTLAKQKDGINICHINAQSLYGKIDEFRYMFEQSNVDVVCVSETWFMPHLCDNVILCTGFDLYR
SDREGNGGGVAVYINKKLKSKLICKHPPESAIEYLFIELSASNSSLKLLLGCLYRPHRNTIYQQVIDAISDLSVSYTDVI
IIGDLNSNILKERHMESAMASLGLHLVNNSRPTHFSNTASTLLDLCFVNDKEKIVLYDQLSVPTFSRHDLLFLTYDFNCK
KIDDDIWYRNFKSIDITKLNDEFNTYDWNIIFDMDDVNSQVEQLRAHITCLYEKFVPLRKLKIAQKKNPWFNQCIAHNIS
LRDKAYNKWKRYRTSVQYQEFKTLRKKTNLLILTAKKSFYSVRFQSAILTRRTWRELKDLGIGKRTNNTKIDVDIDELNR
KFVINGVPEVAYNHYLDNIPNSSCDNNFSFMCASQCDVLESVLKIKSNAIGLDEIHPKFLKILLPKILPHVTYICNTVLT
KSIFPSTWKLAKITPVPKGKNEYRPISILSFLSKVLEQLMSQQIRTFLDNNALLSDKQSGYRRQRSCTTAIVNITEDIRL
TQDEGNVTLLVLLDFSKAFDTVNHEILLSKLVNFFNFSKVAIKLLKSYLTDRRQVVVSGSRISSMMSTARGVPQGSVLGP
LLFSLYVNDLPDVLLNCKSHMYADDVQMYVSRPLSKIDECISVCNSDLLNVSSWAKRNGLALNPDKCKCVIIYKKQLNTM
AYPKLEIEGKQINYVDHVENLGLTFNNTLSWSSQVVKATGRTYSLLRKLAPTQKYLPDILKLMIAKTYLTPTLFYGIEIF
GNCDAESQKKLKVTFNNIARYIYNKRRTDHISILARQIFKMDLKTWIGYRTIIFLHRIIYTRQPSYLYDKLTFASSNRTL
NLVTIRYKLANSGKQFLTNAIRLWNELPFNIKNISRATQFRDKLEKHLINP
>L2-4_gag#LINE/L2 100-792 not in repeat database Perhaps: [Ciona savignyi]
MEATMLGKLAAMEEAMKNIQGKQEIIEAKLDNKSPDTAPVSSISDSTVTAREVAEMRSSLNGLEASMKELRAMLQRTDER
IDDLEQYGRRNCLVLHGCQDIPKDHRFLGYVLAIFNKLPLPFPVSPAQIDIAHVLPTKNGRTPIIVKFVHRIVRNQIFAA
KRHLKGTKMAITESLTARRLRIMEKAKEAFGFRMVWTINGVINAMVNDKRQVINRLXDITALLARNSSST
>L2B-3_CQ_gag#LINE/L2 2-895 Fragment [Culex quinquefasciatus]
AAGKRKAEDRAEDVEETGIGFVTPKTSFAEALRKRVKVTEEEVKKKQARKPDPVVVIKPKEGVQVEDARAEVQKKISAKN
LNVQRVTSSKNGSVIVELKDEASVGVLKASVDAQLGGRFEARLRESMKPSIKIIGMSDEFSEEELRASLVEQNDVFANLK
HFKLRKTFQIEKWRFNNHAAFVELDAETFFKVLEQGKVNCGWNRCRVFDGLQVTRCYKCNGYGHKGADCKAETLVCPICS
EDHEWKDCNAETEKCANCEKLRVQRKLNIDVNHSAWSSECPVFIKEQEKRNKMVDFTI
>L2B-2_CQ_pol#LINE/L2 1722-4466  [Culex quinquefasciatus]
QSNAGRKVNATDIIYLNIAGLTTNYVALRQLVESSQPLLVLLSETHITQPEAFDQYSIPGYKVVFCLSHSRHTGGVAIYF
KESIHLKVCLNEFSENNWFLGITVEKGMKTGNYGVLYHSPSSSDQRFIQILENWLENFVDMSKFNLITGDFNINWLDEQN
SAHLKSLTEYLGLTQKVTAFTRISRNSRTLIDCVFSNIDCVKAVVKSDWKITDHETLVITISEFNLESSDDRIKIKSWKN
YTPSAFCDLLERHVNFRTLTGELDFKSRILTNTLKNCTSELVTTEYINRKDSNSWYNGELMRLKQKRDKLYKKFCRTNNP
RHWNKYTVARNKYTKSLKTTRSTHIQNNIERNKNNSKELWKILKKLMKSKDSLPRTILFGDIEECSDDVIASKFNNYFIE
SVVEINESIERTDEPVEIRNMMNRNCRLEIFNPITYVQLKKICFDLGNSAGIDNVNAKVLKDCFHVIGHTLLEIINESLL
SGQVPTVWKESLVIPIQKVAGTKKAEEFRPINMLHTLEKILETVVKSQLLEYLNINKLLIPEQSGYREGHSCETALNLVL
AKWKEFFENRNSTLAVFLDLKRAFETISRPLLLQTLQHFGIGGAAFNWFKNYLNFRTQRTIFNEAISESRENNLGVPQGS
VLGPILFIMYINDMKLVLKHCDINLFADDTVIFVAAKNPIDAVLHLNEDLDALSKWLKFKQLKLNINKTKYMIISSRHQN
IQDVQISIDGEQIDRVNSIKYLGVTIDENLKFNIHIDNTIKKIAKKYGIMCRLRNDLNFQSKIQLYKSIISPHLDFCSSI
LFLANETQLSRLQRLQNKIMRLILKCNRFTSSTWMLDALQWLSVKQRIIFSTMIFVFKLINGLLPRYLCDRILRGSDLHD
HFTRNADEPRTPNFLFGAAQNSLFYKGVNIFNSMP
>L2B-5_CQ_pol#LINE/L2 909-3719  [Culex quinquefasciatus]
QPDKPHDVLYLNIAGLPTHFDELQLLIQNQKPKLVILTETHLTASHDLARFAVPCFEMVNCFSKSLHTGGVSMYIDDRLT
HEIVSNKTVGANWFLSVDISNSSFNGIFGGVYHSPSSSDRDFVECFESWLQEVVVEDKTNVIAGDFNIRWGQGPYSLELR
NATDVAGLKQKITEYTRSHGGSRSIIDLVFSNIDECDASVVEEFKISDHETIGVCVPGALVVSLPDNKKKFVSWKKYSKS
RLQALLRSDVTLQTQEVSVDAKAKVYSSSLVKAVSELTEERVVRATRSNAWFGSSLQMLKQQRDDAYKTYKRTSSEECWQ
RYKILRNLYVKELRNAKNGSVRQEIDRCSGDSKRLWKCLKSLITPGGMKKSSIVFEGDEGGSCSDEMTARKVNKFFVKSV
EEIHKSIPAPQLPEVSSLPPQNLFDSFQPITMEKLIEIVASLKKCSGTENITKQVLLDSLGIVGGKLLEIVNVSLQQGVF
PKEWKKSTVIPIPKVAKSTKPEDHRPINMLPLYEKVLETVVKEQLLDFINREEILLTEQSGFRKKHSCESALNLLLLKWK
QAIENKRTILAVFVDLKRAFETIDRRKLVEVLRRYGIAGNVLKWFSSYLEERTQVTLFNGVLSPEVAVDLGVPQGSVLGP
LLFILYMNDIKKALQRSEVNLFADDTVIYVTGSCREECCEILNAELNVFADWLKRKKLKLNVSKTKCMLITNQRRDDTDG
TVYIDGEVVERVDVIKYLGVMLDNKLNFDEHINYTIRKAARKLGIMYRLNKYLSFDNKLMIYNTLIAPHFDYCASILFTA
TQQQQKRMQLLQNKVMRLILGCERLTPRSFMLDCLRWMSVRQRVEYNTLVFIFRLTKGMAPQYLTDTIVYGSDVHQHFTR
QAREIRLLNFKMTSTQNSLFYKGYRLFNMLPEATRNSDNLRDFKKFCKSFVRQRPLL
>Baggins1_Cis_gag#LINE/LOA 632-1808, 1 frameshift [Ciona savignyi]
MEQKKNHEKQPADDGLSSTSLSRLADKPEANPDXASIQCSAASPPTTSAAPQAFFSDSDGVSAVTSVTSPLAHKLSNLTM
EQAELSDLSDSGEANSIRRTREACEPAPSKAEYKREKNRRQKARKRARKANDNLCNRPGPSNTSVPTAAPTGEWQSERQR
SAKRKRQSKTSSSTTPTPATKKPRGPSASSTRATSYADAANSSLRLDVLPASGSESLVQADIRYIESAMADSMLDGTLPL
IKAKGLVLLKSGTMKVTCMDAASLAAFRRFIRGLPPMPGKNIGYTANGPEDRLNERVYTVWVSDPKVRTNPERFIRLLGF
QNSELPIEKFHVRGYVGEVTEEGTHLRVGVEMSAIEDLRKMDFSPHYMAGLLTFVGNRSVEATTHSESLKH
>REX5_pol#LINE/L2 31-3360 via tfasty with CR1-17_DR_pol, 2 frameshifts. [Xiphophorus maculatus]
MAPVCTAGRLSLPYLCVLMFVLALICQSFYTSALLIYDRRTLLDLRSSAETKFLYGNPKTLPPVLMGVPDYLLCILATPF
RRKRHRVRGRRSGRLVRLKFSLSRIATTGTNLFWSPLDSAYTWLVPLAGSEGRVFQQRPRYRIQRRSRQQGVNSTNLQAL
RRGVYSAKDQNRPAPVRIGLVNARSLSNKTYILKDFFISNRLDFLCVTETWLSVGELTAFSELLPPDCVYLNCPRKSGRG
GGIATFFRNVYKCKPLPASFSSLHSSFELSMFELGRSYPMLCAVIYRPPGYNKDFMNDFSELLAYVLPLYDQVLIVGDFN
IHVCCPDKQMVKDFLNLIDSFNFTQWVFEPTHEGGHVLDLVLSFGLPISHLMVGDAVFSDHKPVLFNIDMPSNFVKPCVS
ARCHRVISQQTAIRFSELFESKISMPSFNDTETLTAWLYSTCQPALDEVAPMKPRKWRTKMEPWLNDRTRAARRECRKFE
RKWKKDKLQVSFQLLKDSWHRYQLIVKDTKREHLSNIILLNCHKPRLLFHIVDSVLNVPHYTGFEPSLEVCEKFRVFFED
KVAGVRANIMCSASDPSVAVKCSTALSQFEPVTLSLIHEAVGHLKASGSAADILPPRLFKEVLPVLGISITAIINSSLIT
GVVPKPFKQASVQPLIKKPGLDPFLLSNFRPISKLPFMSKILEKVVYNQLKAYLDVNNILEDFQSGFKTLHSTESALLRV
FNDILLATDAGDPVILVLLDLTAAFDTVDHDVLLSRLEHYVGFKGTVLVWLRSYLTDRSFCVDIDDFRSSSAPLLCGVPQ
GSILGPLLFSLYLLPLGSIFRKHNIAFHCYADDTQIYVPLNRKGVNTVPILLECLDDIKTWMALNFLNFNERKTEVIIFD
PGTTCKSTPVDLGPLSHYVKPFVTNLGFVMDVNFKLDKQISAVVKTSFFHLRRLAKIRNIVPVDYFEILIHAFITTRLDY
CNSLYVGVSQSSLSRLQLVQNAAARLLTGSRKREHVTPILYSLHWLPVHFRVHFKILLFVFKSLNGLAPFYLSELLHTYV
HCPPRALRSASQMNLEVPRTSRRQRGDRAFAVAAPKLWNSLPMLVKQAPSLAIFKSALKTYLFRLAFDSV
>L2B-1_CQ_pol#LINE/L2 1611-4412  [Culex quinquefasciatus]
QPKPVGDVLYMNIAGMRTHFDELKVIIQQNKPKLVILTETHLTSQHDLDEYEIQNYRRSVCLSRSAHTGGVLIYVDDRVD
FETISDFVAGDNWFLAIDVKSPTLNGIYGGVYHSPSSSDTSFIGSLETWLRSVFVEDRTNIFAGDFNIRWNEPGYSRELR
NVTEALGMKQLVSEPTRVGPSSSTMIDLVFTNMVGGDARVVEELKISDHETIGINPGKSSVHLSERSKTRISWRRYSKEK
LQEILLSNRSRADPMASVNEAGEKFDAEIVAAVGSLVDVRFDERSDPHDWYGDQLSTLKTLRDDAYRKFKSTKLVSDWDR
YKRCRNRYVNQIRTSKNSSINNEIRSCGGDSKKLWRCLKSLIQPGGQPPTEIVFGGPRGDAETATLLNEFFVQSVEEIHG
KIPPTAFTPPTTGGTEHKELLSNFEPITMNKLKETVRSLKNCAGVEHVTKRVMMDALDVVAVELLDIVNKSLSRGEFPDA
WKRTLVIPIPKIPKSKNPEDHRPINMLPLYEKVMEIIVKEQLLAFIDRTGVLLKEQSGFRKNHSCESALNLLLLKWKQCI
EEGRVVLSVFVDLKRAFETIDRTKLIGVLKKSGIRGTVLKWFSSYLENRTQVTRYNSAVSSETAVKLGVPQGSVLGPLLF
ILYINDIKQALRRVQVNLFADDTVLFVIGDSFDECFDIMNEELVGFTEWLKWKKLQLNIAKTKCMVVTTRKTNDCRRCVQ
MDGGVVERVETMKYLGVMLDEKLNFNEHIDYTIRKAARKFGVLCRINRYLTAETKVQVYNSLIAPHFDYCSSILFLGTQR
QLKRMQVLQSKIMRLILKCDRLTPRRSMLECLQWMSVKQRIEYNTLVFVYRMKKRMAPQYLTEAMVCGRDIHEHDTRGAD
DLRLQNWKKACTQNSLFYKGFKLYNQLPENAKATSNINEFKRNCKEFVRTRPLE
>L2-5_NVi_gag#LINE/L2 475-1554 [Nasonia vitripennis]
MNTPPARPRPRRRELNQQQRQQQQIHLPRARLERMCPKRINRHPHRLLAPEPNRLREHRLRLSRRPLRTSSRRWMTFGRS
RMRPFRHKTPCLKGSLELRKGLALLQSRLKALDDLPALKTRLNNVESSISELQAQYQELSSRSPAEQQNISIAPASEEIN
NLRSELAEVKRRQERSANNVVVISDLAYTQETSLQLLAFTVLAALDSTVLRRDVATVRTMGRLDATTTNAQGDSRFPPLA
VTLSSSALARSIIVAKARKRKLHTSELDAALLEEARALCPDHQGLININELLPPDIHKLRIKARLEAKRRRGCRSFVRDG
RIYIRSGEDSERATIISTDAELEAFLAHTPPIANTDITH
>L2-4_pol#LINE/L2 892-4206 not in repeat database Perhaps: [Ciona savignyi]
MSTPKRCFCQSCSKLIRINQNFIKCDNCKSNYHYKCLTDVSNYSHISVNNIKKQLAPSISNWLCDHCSFEHCLPFSTISD
TELSLLLTSTSSYGNLDPNKLNLFFNDLDYDILNDGDEVTSVRCPELYITSEECKSHLFTNHQGFSTLSLNIRSLTNPNN
FNKLEALVSSLKFKPEVIAITETWIVANQTGHYSSLPGYVFLSNSRSKSRGGGVGLYIRSDLNFQVMDCLTVMEERIFES
LFVVFPDIFPQHSTKLKSSLTYGVIYRSPKLDSESNALFLHNLSNTLEKIESRDSQCILLGDLNYDLLKENNNNNITNFT
NLMHDYCYQSVINKPTRITDSGATVIDHIWSTFDPTILKSGIITDSISDHLPVIMTINTEITKTCTELPSRSFTNLNTTI
FNNNIQNLDLHEIFCESDPDTAYXKLIDQYNVEFENCFPIIHLKSKKAQNQWYTIKIAQLNKTKQKLYKKFIRKKTMQCK
DEFVTARNIYNREIRGAKKNHYRKLFESNRKNMKATWRSINSLLGRXSQPTSKXFEINGRMTNDPVTIANQFNDHFSNVA
SELVRHIPXSTSLPSDYLGPQSPSSIYIFPTSPLEIQAIIHXMKSKSSSGVDNIPSKLVKSTPNNILQALAHIFNLSLQS
GKFVNAFKSAEVIPIYKKGKHTSVNNYRPISLLPSFSKILEKLMYNRTHSFLKQNNFFHNHQFGFRKGHSTSYASNVLVN
LLSDQMEKKKSVLGVFLDLSKAFDTIDHKILLNKLSHCGIRGVALRWFTSYLSNRRQIVNFNGVLSSNTNSVTLGVPQGS
ILGPLLFLIYINDLPNCLKHSETIMFADDTSIFTPGPNQSVICQNANNDLERVSTWLSTNKLVLNIDKTKFMYFSSSTKP
ELLPSSIIINNYQIEQVNSFKFLGLTIDNRLSWKPHMLNLAKKINTNLIMVRKIRPLIDRSSLLSLYHSLILSHIQYCIS
SWCFGNNQILAKLQRVCNRYIRMIFNLGKRENTVKTMQQHQLLTIYDMHKLEILSIMHRCNYQKLPTALLXSIQLKPMTT
RMTTRSKTKFAIPFCSKTISQQSIKYIGPKYWHQLPIKIREIQPHHKFIKAVKQHLLNDPHPLP
>L2-7_NVi_gag#LINE/L2 457-1492 via tfasty with L2-6_NVi_gag, 1 frameshift. [Nasonia vitripennis]
MVKCRKCSRNVATVSKSCTTCGSTFHPRCHVTFLIGKPSDTCCKALVTLAADTQVEPTLTVQNHPSSIAALTSDSPSPLS
FAATSEAGKKLRRKASPPSPSELLASKQTRREFSSSSESSNDSHNMPDSAADEAPAWFKAYLTEYRNDKAEVNQRLNNLE
TGMRKTVSSVVRNIALVDSCEITISGLPPDTSIQPRELARKVFAAIELEWLLNFVIRFRDWPQKAQANEASTSSRTEPGS
RTIVVKLMSAPLRDSALENASLLDKTSAQALFGSGGARKIYINPLYPKPVYLLRKKAMRVAKQLNYARPVVQNLVVCMRQ
TKESPLIPIVSEEELAALEPYRPQQ
>L2_AC_2_pol#LINE/L2 2525-5527 L2_AC_1, 3-7 near-identical.  [Anolis carolinensis]
MGNLNQSTLQGEEGFHGQGLIEVVWGRRKNGHFRPREKRNRVFATLERNRCGSLQDRPPSLKVLLLNARSVNGKTAVIQD
LILDEGADLACITETWLDEQGGVNLTQLCPPGFGVHQQARAGGRGGGVAVIFRQSIALIRCAVPQSPRFECVFLKVGARD
SLGILLVYRPPRDPAVSLSELAEVVSNSALVSQQLIVLGDFNIHAETTLTGAAQDFMVAMTTMGLTQVISGPTHQAGHTL
DLVFIVDGGTVRVEEQNILPLSWSDHHLICLSFAVASNLRRGGGPIKMVRPRRLMDPDGLLRSLGDLPVLETGDPVDVLA
DRYNSELARALDTIAPERPLSLRRVTSTPWFTEELAVMKRARRGLECIWRKSQDVSDQARAKAAIKAYSVALRAARKVFT
TARIASAANRPSELFRVVGELLRPPETQGLPDDLATRCSDFAHHFAGKVAQIRHELDSSLTVVPAEVTEVPVCSILWDSF
RLVLPDDVEGILGSVRATTCALDPCPSWLVKLAKDGLLGWFVAIINASLVQGSVPSCFKQAVVKPLLKKTSLDPSVCSSY
RPISNLPFLGKVLERVVATQLQEFLDDTDFLDRSQSGFRPGHSTETALVALVDDLRRELDRGSVTLLVLLDISAAFDTID
HGILLGRLSGMGLGGTVLQWLQSFLEGRSQMVKLGDTCSDPWPLTCGVPQGSILSPMLFNIYMKPLGEVIRSFGGRCHLY
ADDTQIHYSFPSESKEAPRMLNQCLAAVADWMRRNKLRINPDKTEALLVSRSSDRGIGWQPVLDGVALPLKSQVRSLGVL
LDSALTLEAQVSAVAGRAFAQLKLVRQLRPYLVKSDLTTVVHALVTSRLDYCNALYVGLPLKTARKLQLVQRSAARLITG
ASYRERSTPLFKELHWLPFTFRSQFKVQTIIYKALNGLGPTYLRDRISYHKPARSLRSSGEALLSPLPVSQTRLVGTRER
AFSAVAPRLWNSLPIEIRQAPTLLAFRKDLKTWLFRCAFGE
>L2-18_ACar_pol#LINE/L2 1051-4281  [Anolis carolinensis]
MLLMHPLRFTTAFALCIVGGGWGRLEGYGDCRVGEGNGCERMPIYNRKLVNQITSFGPGEEKGKGQCDRGGGCSDGWGAP
IEVVSGRGRYGKGRPNHLIRPRVFGRTLIVPKRSPDVANLGSQDGGPSRLKVVLFNARSVNGKTSFIQDLILDEHVDLAC
ITETWLDEMGGVNLTQLCPPGYSVQHQPRSGGRGGGVAVVYKDSIPLTRCPVPQSTMFECVHLRVGDRDRLGILLVYRPP
RCTTVSLPELAEVVSGLALESRRLIVLGDFNVHAETNLSGAAQDFMAAMATMGLSQLVTGPTHSAGHTLDLVFCQGWEEG
GGVEELTIAPLPWTDHHLIRFRLTAPPNLCRGGGPKMVRPRRLMDPEGFLTALGEFPASSAGDPVDALVSLWNGEMTRAI
DTIAPERPLSSNRAKPAPWFTEELAAMKRKKRELECVWRSGYNESDRTRLGSYLRAYAAAIKAARRAHLAANIASAQNRP
AALFRVIRGLLTPTNQGGSPDNSAARCEAFARFFADKVALIRSDFDTILTAVSEDVTSAPACPVLLDSFQLVELEDVDKI
LGEARPTTCILDPCPSWLVREARGGLAEWVKVVVNASLREGKFPASLKMAVIKPLLKKPSLDPTQFGNFRPISNLPYLGK
VLEHVVASQLQGFLVDTDFLDPAQSGFRPGHGTETALVALVDDLRRELDRGSVSLLVLLDLSAAFDTVDHGILLGRLAGM
GLGGTVLQWLHSFLEGRSQMVSLGDACSAPQPLTCGVPQGSVLSPMLFNIYMKPLGEIIRSFGVRCHLYADDVQLCHSFP
PVTKEAVQVLNRCLAAVSDWMRANKLKLNPDKTEVLLVSRKAEQGTGLQPVLDGVTLPLKAQVRSLGVILDSSLSLEPQV
SAVARGAFAQLKLVRQLRPYLGKPDLATVVHALVTSRLDYCNALYVGLPLKTVRKLQLVQREAARLITGAAYRERTTPLL
RQLHWLPISYRAQFKVLALAYKALNGSGPAYLSERVSRYDPPRSLRSSDEALLAVPSASQVRLAGTRDRAFSVVAPRLWN
ALPIEVRQAPSLLSFRKRTKTWLWDQAFEHESAAKMR
>CR1-27_DR_pol#LINE/L2 6-1559 Fragment, via tfasty with CR1-19_SP_pol, 5 frameshifts. [Danio rerio]
VDKKEIIGIVKKCKNKSSMDWNNIDMNIIKKVIEDIVEPLTYICNRSFQSGKFPNKMKIAKVIPLYKSGDKQYFTNYRPV
SILSQFSKILEKLFVDRLNNFIEMHNLLADEQYGFRKNRSTSLALTEIIEEITNKIDKKEKVVGICIEFXLYXKILKKAF
DTINHNILVNKLERYGIRGVALDWISSYLKNRQQFVEIGNHKSSYLNVNCGIPQGSVLGPILFIIYINDMCKISELFKFI
LFADDTSIFCSGDNLPKLMEXLLKHEINKLKLWFDVNKLLLNISKTKVMLFWEIKKYHNIDLHIDNEVIERVYAIKFLGV
VLNHKISWKPQINNVISKLVKTVAIVYKARFILDNKSMYILYNTLMLPYMSYCVEIWGNTYKSNLQSLCTMQKKVIRLIE
HVGYLEHTNPLFFKLKILKFNDLVKFKTAQFMFKARNKLLPKCIQKFFLKKDKGVSYNLREKQNFRRLKTRTTLKSLCMS
VCGVKLWNSLHQTLKQCQDINQFKKXYKYILLKEYSDE
>CR1-25_HM_pol#LINE/L2 1161-4517   [Hydra magnipapillata]
MSTHCKDCFKKINKNHHYLQCYHCLNLFHKKCCRLNDIEFRILKNSKTSWFCISCREKIFPFSTLSDKELHLQTINDKVI
HINEFENNISSFPNTIQXNLYNELNDFISHQLNNNNDNDVNLEEYPINCKYMDIESFNSSNIDKNNFSLFHLNIASLVKN
FDELNSLLSLINHKFSIIGITETKLKHDILPTIPLNLTGYVYEHTPTKSYFGGALLYISNTLIYKLRYDLNMLKPKLLES
VFVEIIIPKKSNIIIGCIYRHPSMDISEFIKSYLIPLFEKLSMEKNKTTFLIGDFNVDLLLANSDNSVSEFLDTIALNNF
LPFISLPTRITNHSKTLIDNIFSNATSTNIFAGNFTSTVSDHLPQFLIHPLYRTKINTRKSCIFRRNLKQINCVELCSDF
SKISWINVINVNEGKTNKSFEEFFSSFNSLLDKHAPLKKVSNRCLSRGLKPWITRGILTSIKMRNKIFKKFLKAKNPNNK
LNLEKSYKAYRNLLVTLTRRSKKNHYSKFFSDNAKNLKSTWNGIKNLLNISSRVNSSPSCLSSTNSMIXDPIKISESFNS
FFVSVPEDLQNKIHSSNTDFNKYLKNPNLNSMFIKPTDKNEVLSIIHSLNDSKASGPNSIPIPIFKALANDISPVLSELF
NLSFTTGVFPDILKTASVIPIHKKDSKLECNNYRPISLLSNVSKLLEKLMYSRIYNFLNNSACFHIRQFGFRSNHSTSHA
LISITEMIRGAIDSGSFACGVFIDLQKAFDTVDHNILIKKLNYYGIRGIANHWFSSYITDRTQFVSINGFESTHKVIKYG
VPQGSVLGPLLFLLYINDLSCSLKNSMIHHYADDTNLLYINKSLTTLCKKVNQDLHRLCNWLNSNRISLNVNKTEYIIFH
SPQKTIDHIKIKINGKKLFPSKYIKYLGIYLDENLSWYNQLYHLKKKLTRANSMLSLIRYYVPIQTLRMIYFSLFSSHLC
YCCIVWGQKRNFLLNNIASLQRASIRIMTFSPMRSDIEKKFSELKILKLHNLVKFYNCLFVFDFLQNKLPSPFSNFFIKT
NEVHNHHTRNTENSKLYYSFFXTIKYGKFSIKQQCISQWNQCIPALXKKSKKKYPLVTNFLLLNRIQFKNILLECISL
>CR1-27_HM_gag#LINE/L2 130-888   [Hydra magnipapillata]
MAVTLPEIKKLLKEMFKEFKKETEEMFQKQEKAVLDIIGANIKIINDRFEKVEKNVDGNANCIKKLTKELEDIKVSLNFN
EGLIDEKIVTNNKYLDKKMEHTKIDNVLKEKQRNLEDRSRRNNLRIEGIYENDKESWGDTEKKVQTFFTEKLGLKDVEIE
RAHRTGRKNDGRPRTIILNLQKYKDKIRILKELYRLKGTNTFVNEDFSRETVAIRKKLFAEVKERRLNGESVTVRYDKIV
YIKTSFKNNFNE
>CR1-42_DR_gag#LINE/L2 541-1269 [Danio rerio]
MICLLLSGDVHPCPGPHYAKPENFSDFISNPISSQWHAEGPRALQFGYVPGFGDGVLPVCNLEMGVEVVEARRLGTAGMD
RRYGYSSHQESVSDPAILQVRTLGGGSLQSGYAHHTNLRRSVSMDACGGSVAEWETGSPVTKAEVPLRRRVRVESLDAGL
GSGSTSGSVGDFWKSLRISMPLWNKGNSVPNELPNSFTSVNAGLVIPQVFTKPMQHVKTRTINPAIQKNKKKVFFRQLII
QE
>CR1-41_HM_pol#LINE/L2 861-3944   [Hydra magnipapillata]
MAKQTKDFETQHFNVFKSANNALLDNFYDPDLHFFNENNFNSRFFDLKTFKNELKSLNNNFTVIHINIRSIINNIDKLKH
FLVECNFLFSMICLTETWCSDESSRINSNLLIPNYKLISYERKVQKRGGGIMTYIHNDLTTKVRDDLSVSDADGEVFTIE
IINQKLKNILVPTCYRPPEGDIKKFSNHLKQIFLKNNKEHKILFCIGDININCLQYNEDAVTKIFFDDMFQHYIFPIINK
PTRVTSTSITAIDNILTNSFYDSSLKAGVIKTDISDHFPIYFSLFQDTKTNNSKTKVYKRKINKFTIQQFKDSLSAVRWD
KIYQKCNLGHTNSAYNEFLEIFLKHYNNHFPIIEQQLKVKYLQCPWITRGIKKSSKKKQKLYIKYLKNRNEKNLNTYKQY
KNLFEKIKKNSKKNYYSKQIKNATGDIKKTWNIIKEIIGNKKTKSNNLPARIIIDNIEYSDKNKIAEKFNEFFVNIGPNL
ASKIEYPNNSFESYLNDPQSELKYKELSYQELNVALNSLKLNKTPGIDDICSRIVANVFTVINKPIFEIFKSSIKTGVVP
DKLKVAKVVPIFKTGESYLINNYRPISVLPTFSKLLERVIYNRLYEYLIQNKILNKKQFGFQKQYSTEHAILDLINSISD
SFDKKQYVLGIFIDLSKAFDTVNHNILLKKMESYGVKNITLDWFKNYLSNRQQCVISDNYKHSKLLRIECGVPQGSILGP
LLFLLYINDLTKTSKKLDVIMFADDTNLFYSSNSIKNLYECMNKELEKLNIWLKLNKLSLNTEKTKYILFHSKKQKNNIP
TILPPLKIDKVNIKRTETTKFLGILIDENITWRAHISTINTKISKNIGILYKVKPMLSQDNLKSLYFSYIQSYLTYANIA
WASTHKSKLNTLYLSQKHASRLVYNKYKLTHAEPLLKTLNALNVYQINIYQNILFMLKYNLGLVPSHFLDNFFQINSNRY
TTRATGNFTLPKKTTKFSRFSISYRGPYLYNKIISENIELKTLNNSATLKKKLKHLILNIKNFIDMY
>CR1-24_HM_gag#LINE/L2 73-897 CR1-24_HM_pol orf too damaged and close to CR1-18_HM_gag  [Hydra magnipapillata]
INIYFYILTYWLIMAITMDQVKKTIQKMFKEFKNEIDEMMKQQEKNVLNILSANTKIIYDRLDKVDLKVNDYAKHIKTLE
KDVEEIKRSLNFHEHLFEEKIKTAIASQEKKHTSGIDKLNHSSDYVKIKSKLREMEDRSRRNNLRVDGLKESEGETWIDS
ELKVSKVFEEHLGLTNIRIERAHRTGQRDMSKPRTIVVKLLDYKDKVEILKKTSQLKGKNIYINEDFCAETVTIRKALRE
QMKVERAAGKYAFISYDKLVIRDWAANKSKNFSL
>CR1-15_HM_pol#LINE/L2 804-4070   [Hydra magnipapillata]
MAIKYHCKFCNKAVANHQRGILCDCCSSWVHAKCNSINKFSYNLLVKDSSDWYCSDCIIKNMPFSTLSDLEFSLTISCQT
LPTSTLNSLESPLQFKNFFKDINKISNTYFNCKYYDILDLNKTLKSNSELYLHLNIGSLHFHIDELRSLISSLTILPTVX
GISESKLYINDPNITDITINGYNIEQCSTEAKKGGALLYLQSNLNYNVGRDLIVYAPKYLESIFIEIVNPFKKNIIVGCI
YRHPSMNPKEFISDYFNPLLEKLSYENKQVMLMGDFNMDLLNYNESLIISDYLDSLCSYSFYPTIIQPTRVTXKSKTIID
NIFLNFQIPNLISGNVTISISDHMAQFVCIPSTPFKRKKSITTKRSFKNFDDNKFIQDISNIDWKFYIKNDDDVNESMNF
FLKTFNKILDRHAPYKKLTKNQIKLKSKPWITNGILKSISIKNKLYKKYIKSKNSNTKSQLFNKFKLYRNKISNLLRISK
KSYYISFFNKNLNNIKNTWKGIKEIINIKPSTPIKSFNLKFNGNTISDSMAVANIFNKYFETIQHPLKSKMISSKCNFSD
YLKNPNSNSFFXDPVTENEVSNFIKNSLQNGKSFGPNSIPTFLLKLTSHVISKPLCTIINNSFKNGLFPDVFKIAEVIPI
HKKGSLMDHRNYRPISLLSNISKIFEKAMYNRLYNFFDKXQCLYKHQYGFRNKHSTTHALIEITETIRKALDNKLFACGV
FVDLQKAFDTVDHSILLSKLEYYGIRGITLQWFSSYLYNRSQFVSINDAKSFLIKCSTGVPQGSVLGPLLFLIFINDLNI
SLKFSTAYHFADDTDLLIINKSLKKINKHINHDLSNLXQWLRSNKLSLNTNKTELIIFKSNQSKINKHLNFRLSGQKIFP
VISLKYLGIKIDSNLSFSSHLKDLAVKLCRSNGMLAKIRHYVNYETLLNIYHAIFGSHLRYACQVWGQCKSNAFLRLSNL
QNKALKIIYFQHYHSNSDILYFLSKILKLCDLVQLLNCLFVWNHKQVNLPPSFSNFFTAKESSRYYLRSFSNFKLSVPNH
CSVKYGDNSIKNQSVKSWNNLPFQLKSLDSFSKFKTXLFNYFIEKYSN
>CR1-14_SP_gag#LINE/L2 163-852 [Strongylocentrotus purpuratus]
MEKEMVRLVTNMEKRESRLSDLIEEKLARLHDLEVSVEERLHEFKAVKDSLERVTEDTTRVSRELDQLQQYSRRNNIRIL
GIKESPNENTDQLVCQIARSIGVDLAPTDLDRSHRVSRRPQEGPIQDPQGNRSFANTTRSSDSRPRAIIAKMMSYKSKEA
LIRNRRKLKGSGQVIVEDLTRKNAELLAATSKMKDKVSATWSIDGRIMAVLTSTGKKKQIRSHSDLKLI
>CR1-16_NV_pol#LINE/L2 1078-4482 [Nematostella vectensis]
MRSSLALVLYVSLMLVLASSKAPVSSEVRWIGHCSTRPIFCSRVRIRRQKCPCMYYNNTSATFHLPLEGDLVFKLNPGPE
NSPIPTVVSSHSKVRSSTWTRTRNARNLIDTQQSQLEMNNPQHLHRTYNFSMMNNVRQPIPVLVNNYPANDKLVESQSKR
KSVRSSNLIPIPIVNTNKDNINKKIRLRLSHLNVRSANNKAPIIKDFTVDNAIDILAITETWFKNGDYNSVEMGTLCPTG
YRFLHSPRLNARGGGVALLFKDRLEINSRICEQFNTFEFMDVRLRDSVQLRIFVVYRPPESTYTLFFDEFSRLLEQVLAE
SNGQLLFIGDFNLHMDDANDRYAKKFSNILDAFDLKQHVKGITHKDGHTLDLVITRSDDDIIKGISVRNPMISDHHAIHC
ELDLCKPQFAKKVVNFRKLRSVDIDQLSEDLLNSELFQNQQVNINNLVIKYDNTLKALLDKHAPLKAKLVTIRPKAAWYT
PEVSEEKRKRRRLERKWVSTGLSTDRANYAYQCGVVNNLIDSLKTSYYTSIIQEHSLDQKVLFKTINKLLEKKSVQYYPV
ASSSEVLANNFADFFNEKISKIHLDLMEQQTMVGPNPYCDHTCTVEMSEFDVISEDDVKILAHKPISKSCNLDPLPASLL
KGCFSTLLPIITRIVNASLSSGVMPDPMKVAELHPSLKKHNANHLLYPNFRPVSNLPMVSKVIEKAVAEQLTKHIVSNNL
DVSLQSSYKKFHSTETALIKVQNDILCAIDGGNSVLMLLLDLSAAFDTVDHSILLSRLSLSYGLTGNVLAWFRSYLTSRK
LYVRVEDCKSSLRSLERGVPQSSVLGPLLYLAYTSPIAQIIARHGILYHLYADDSQLYVSFRGNSQDELLMAKTKVECCV
HEINAWMVHNGLKLNHDKSELILFSSKFCPAPSLEHVKVVDEIIKPASAAWNLGVILDKYLSFEDHLKTVCKSARFHLRN
IGKIRKYLDKNSTEILIHAFISSKLDYCNSLLYGLPDYQIHKLQLIQNTAARIISLTKKTEHVTPILQDLHWLPVKYRII
FKVLLTVFKSLNEMAPPYIKDLCKYKTHSRSLRSASQQYLQVKRGNLKTYGDRAFSIAAPKLWNELPFHLRTIQNLNTFK
QCLKTHLFKEAFNL
>CR1-17_HM_gag#LINE/L2 63-807 via tfasty with L1-3_NV_gag, 1 frameshift.  [Hydra magnipapillata]
MLKMEITMKSIEKMISSKLEEHKKSILKETERLLKEQEKTFTSIMSANLKIITDRLDVIEKDNNNNKRKISNFEKDINDI
KDSLNFQEDKISEKLSHIKKYYDNEVNILNKKTVDLENRSRRNNLRIDGLHETPGENWDDCEKAVKDMIKKQLKITSEVV
IERAHRIGQHKHNKPRTIVLKLLNFQDKNKILNAVKHLKGTGLYVNEDFAPETTELRRKLWEEVKKLRSEGKYAILKYDK
IFSRDFKK
>CR1-16_SP_pol#LINE/L2 1212-4178 (one stopcodon) [Strongylocentrotus purpuratus]
MMTLRASYERAISNVDLSTVSHILSPMIGDNETFGIDQSFYLPDDLNSTFLKYSLNSINFSILHMNCRSILSNFDGISAL
LNSLNFQFSVMGVTETWLKDNSLLCNIQGFSFLHNIRAERRGGGVGVFIRENLIHKHRGDLDINNGVIESIFIEIENVCN
KNIIIGVIYRPPDQSVQEFLDITGSALHKINTENKIVYLMGDFNINLLNTTSCHKANDFLNMLVTFSMYPLIHHPTRVTD
RCVSLLDNIITNDVTNKLNGAILVDISDHFPVFSVCHHKIKEKKYVISKRQFNDSNIFEFSKRLRNVRWNLKSSDCNVSY
SCFLSKFIRIYEECFPLQEINVNRRKHKPWINKVLMKKIKKKWKLYEKSLKNSTEYRKRVYKQYRNKVTNEIKKAKYQYF
KDKFNHDKGDIRLIWKTINGELGTKSVKQCVEKIDVNGSTITNKEDISKSFNEYFVNIGFNLTNNVQYSNRFYNDNVFVN
DKSAYFTPISCKEIIDIVRCLKNGTSAGYDDINITVVKKIIHLICVPLCIFPNQMKIAKVIPVFKSGDRTNVHNYRPISV
LPIFSKIFEKCLYKRLRTFLTSCNILSENQHGFRTGHSTTTALLNFIDKVSNAIDSRQFTIGLFLDLSKAFDTLDHVILL
RKLEAYGIRGILLQLFKDYLSNRQQFVSIQNQQSSYLPIRCGVPQGSILGPLLFFxMSHNNLRTLVDSFNSEINKLSEWL
INNKLVFNVAKTQYIVFTKRRIEDNFAITFYGHQINRTSCVKFLGVHIDESLTWHEHVGVVCNRVAKAVGIIYRLRHFPR
HILVMLYYALIFSHVNYCNIAWSNSHDYFITKLFVLQKKAIRIISNSPYHAHTLPIFSQLNLLNVYDINRLNIAIFMFMC
SRGLLPSPITSKFVLNSNIHNYNTRNAVEYHLPKVRTNISKNTIFYKGPHLWSTIPNHLKNQPSVNSFKRSFRLFLSNLY
STT
>CR1-42_DR_pol#LINE/L2 1269-4114 via tfasty with CR1-23_SP_pol, 1 frameshift. [Danio rerio]
IWDPKVKPRGLLGGHLNVRSIISKSDEIHHLLLDSNLDFLCLSETWLHKNSPSAALEVPGFKIFRKDRVGSKGGGVMIYV
KSGIQCNEIVWPNDTDLECIGLNLILSPQMSFTLMVIYRPPSSNVSFYENLKQVLKQCNFSKEVIIMGDFNINWDDKIVR
KHLKQITDHFDLQQMINGPTRLTNSTRSQIDLIFSNRADRILKTFNMLTGISDHNLILVARKLSSKRLNSFVRKHDSYGV
PKHKLDDFRRAVLQIEWDELLTGTDQDEDSQIFTKKLERTMTDFSCTLKPKNKKHTVPWMNSDILKIIKKRDLALKIAHR
SKLTHDRQHFTMLRNKVVKCMRKAKADFFLRIIEEQEVTPNSIWNQLNYLKGDKRKDRSSIELMVNGEMINKPADIAEVF
NNYFVDSVVSITQCFSPNYSEVHQVNTVEQAFSLGLVSESDVNRAITSLKSSRAKDIFGMDVILLKNISESLVKPITKII
NLSISQGMFPSAWKSSVIVPIFKSGDPHSSSNYRPISILPIVSKIAEKLIATQITNYLNNSSFALHPLQFGFRANYSSEM
ANCYFTEKVKSLLDKGGIVGAVFLDFRKAFDTVNHRILMSKLVGFNFSPQTLKWIESYLSGRTQCVNIQNYKSAPLGIST
GVPQGSILGPLLFTLYINDLPSMCPNNNIQMYADDTVIFIHGSSVLQVADRLTESLVHLSAWLDQCCLQLNISKTVCMFF
SKNGRLSVVPDVFVSGERLQVVSEYKYLGVLIDSKLSFQSQVKKVCNRVRFSLANFRFIRDQMSCEAALIYYHSMIISHI
TYCLTTWSQASITTLKPLKSLYKQSIKTLDKKSVQYHHCLILKKYNLLSWENLITYVHICLMFKTLHNPTSPLNQFINIR
TTAHRTTRGGDRGDCIIPLKKSKFSQSVFSVRAAREWNSIPPTIRRSCTFRSFQSHVRNWLLTNQHCQH
>Crack-3_BF_pol#LINE/L2 1249-4308  [Branchiostoma floridae]
MNSNPPQPSTLIFNPCDLNNLDNGSQISPLDPDTNFLNDFYTSINTTSQYHTVESFNKSCSTPCCNTLSLFHLNVRSLPC
HFDELNEYISSLHQHFTVIALTETWLTENIAENYSIPGYNSIHHCRKNRSGGGVSLYIRNDMYHQERGDLEFVIDDTGTK
SISIEIIPSNPKEKKTILSCVYRPPNTDIIEFNERIKESINNINRERATCYIIGDFNINLLNNTNQPTTDHINEMFSSGF
YPLICRPTRITPYSATLIDNIYTNSGSNNIKVGILITDISDHFPIFLSSELNEPVRQADKISYRQVNTTNIQKFTQSLSE
IVWSDVLNETDTEKAYNQFLETYGSLYEKCFPKKTTKISQHSRKKPWLSNGLLKSIRRKNKLYTKYVKNPTPLNHSIYKK
YRNKLNHLLKTTKKDYYHKKFNEATSNIKQTWSLINEVINRNKSNSAGPNKIQIGTKTTENKDEICNEFNDFFINIGPTL
ESKIPKGTQDPLSYITLQVNSNLSTFVPPTDAEITDIVKNLKDSAAGHDEISPKVLKLSLPYVIAPLTHILSLSLQNGIV
PHPLKVAKVTPIFKSSDPLNVNNYRPISVLPCISKVLEKLVYSRLLKHLNQNNILYKHQYGFRKGYSTSLALIHLMEKIS
TAIDNSEYTIGIFLDLSKAFDTVNHSILLNKLKRYGICDSAIKWFSSYLSNRQQYVALNDNKSQPKIIECGVPQGSILGP
LLFLIYINDLEKASSIIFFILFADDSNLFLSNSNFDTLVKLANEEMKKVMSWFEANKLSVNVKKTYYLIFCNRNKTYNKS
AKIFLKSVPLSQESQAKFLGIIIDDRLTWKSHITMLGKKISKTIGIIGKLKHILTQKTIITIYNSLIYPYLTYGNIVWGC
AYKTTLQPLILLQKRFVRSATGASFHAHSAPLFTKLKILNIFDINRLHLMLFTFKFLNCSLPETFNGLLNLNSHFHNYQT
RQSAHFHIPLVRTSVAQMSVKYKCIINWNNLPLHLKCLTSIISFKRNLKNHLLSFPTDI
>Crack-2_CP_gag#LINE/L2 304-1356 [Culex pipiens]
MSHGEDAIVCAGCEKEEADENKVIECVECHRYWHTKCKKLYGSTARRARSKPFLCSTECSELRSSVENDKKAEGLIAKVL
SEVQCMRQEHAESNRELRNAFKELEKSQSFLAEKFEGINNDIKDLKLGQHFLKGQVDEVHERYESVGATVERLEKEVDQH
NRANIKKNAVILGVPATKDENITAVIEAIAEAINCQLPEDAVFEAKRIGDQKDGGKVAPIRVVFANEETKEKLFDCKRTH
GVLKAAQLGSNFASASGRIVLRDELTPYGINLLREVRDLQESLEIKFVWPGRDGVILMRRTENSKIERVRDKNDIRKLNQ
RRAKRSLDETNSSFNMSTNSSPRIQQESKKR
>Crack-8_HMa_gag#LINE/L2 1-711 Fragment [Hydra magnipapillata]
IEAILKKQERNFANIINANLKITNQRLDKVEKMSNDNVNIIKAISKDVEELKTSLNYHEELVEKKIKTAVITVEKNKNYN
ETKNNKSEFTYVKKKLREMEDRSRRNNLRVDGIKEEDNETWCDSEAKVHKLFDEQLGLKSIKIERAHRTGLRNNKKPRTI
VLKLLDFKDKIAILTKSSTLKGKNIYINEDFCAETNLIRKDLKEKMKVERQSGKFAYISYDKLIVRDWNQKKSNLCS
>Crack-11_BF_pol#LINE/L2 498-3899  [Branchiostoma floridae]
MNMAGCLLVQFVAFTAIILQLSNPVISLKRVSTQADSITTFNQVSCFKSHHTAVTPEEYVLSLLYPTANTGSRKNVCHVE
TRVNVVHLCLHTLLLLSGDVASNPGPKDPCGVCTKSVRNNQKGICCDLCDKWFHIKCTDLDHKTYCNLANSHEYWYCNQC
LLPCFSDSFFNSPCNSTMGSSEEENVDLEDCPSIIPLKGLSIVHLNICSLYSKLDQLSVFMTSNHIDVLTISETHLDGSI
IDNELHIAGYHLYRLDRNRKGGGVAIYVLDSYTHSERKDLQQPGLEALFCQIDLPCTKPIIVGSVYRPPSAPVEFYSLLK
NSLETWTLSSPNSELYLLGDFNVDLGQHKNPGARNISSLSNEYQLKQLIKEPTRVHQHSASIIDHIYCSDLHLVTTSGVL
QCTLSDHYAVYCVRKATRQRANTKYVTSRKFTKFNEQSYMDDLSKVDWNAILHIDKVEEAWTLFKSVLTTVSDIHAPYIT
KRTKDNQPKWLTSDIRKLMLTRDDLKAKARKSGATADWEAYRAKRNVVNKMVQRAKAKYCQEKLEENVSDSKKLWGTIGE
ILPNKKSIVSKTLTFAGEHLTGLTDIVKGFNKFFGMAGRKLAECFGSHNPTPLCPAQYKNLDCTFTFTPLTDQAVHTQLK
NLPIRKAAGLDNIHPRLLKAAAPIVAQPLTHILNLSLSTGIIPSEWKLARVTPIHKGGDQSDPNNFRPISVLPIVMKIFE
KEVHKQLLAYLHSHDILCTNQSGFRPSHSTTTTLLDVTDYILHNINSGKLVGTVFIDLKKAFDTVDHSLLLTKLNWIGLR
STELDWFTNYLADRQQRVSLNGCTSDSIPITIGVPQGSILGPLLFNLFINDLPKAITRSKVTLYADDTAIFFSSNDPRCI
ESTLNMELKQITSWFKSNRLTLNIKKTKWMLMGSTRKTNSTPDLEIKINGDTLERVSSYKYLGVILDSSLSFTDHLDEVC
SKMSQRLGLLRRLRPYLCTGVANLLYKTLALPLLEYCNVVWDNCSAANKQRLQILQNRGARIILRREPRSNVGELHQALG
WSLLQERRNRQICIMVYKCLHGLAPNYLLNTFRFNNQIHSHNTRQAQLLHKPNYTSRAGQRTFAYRAAEIYNTLKPETKQ
ATTLKAFKQSLIS
>Crack-10_BF_pol#LINE/L2 360-3764  [Branchiostoma floridae]
MNINLRLYRARIGLFGPIPQLCLYKDNNVRWRFYQVLLITICLILTSNQNGILTAANQENELKTNQLMHHWQNASQQVTS
LYHKNLLTEQCNDQVNLICLAFDIHPNPGPISSTCGTCSKRVTNKQRAICCDTCDTWFHASCVNLSTEDYDYLSNSSDQW
DCFGCTMPSASRSFFEDCTNLSEQYQANDSILSDNLDYQTVFDQLKSKKGLKVAHLNIRSLLPKLDELRAGMIHNPIDVL
ALTETWLDASIDDNELYISNYTLYRKDRDRHGGGVACYVNDRLQHNLISELTDFNIENVWVEIKYSIGKPIVIGTVYRPP
STTTQFFDTLEPAMTAATALSDEIFVLGDLNCDTLSKSSSKKIDNLCNLFQASQLIDKPTRITENSSTCIDVIITTSPEN
VTDYGVCSTGLSDHSFIYVTRKVRQPRGTPRTATVRSYRNFDESSFQEELFNAPWSKVEEHADVNGALDCFHSILHNICD
KHAPWVTVRIRGHEPPWMTQEYLSMARDRDYYFHRAKKTKQPGTWETAKRLRNKCNNMAQCLKKTYYRSEIESKQNDSKG
LWSTLKTLLPGQTKHADKVPKQSENNIANEFNSYFTSIGAKLAAAFSSVYMATIGPPKSMFSFADIPTEFTHQQLLNIPL
GKSTGVDGVSSRLIRHAAPAIAAPLTYIYNLSLSTGTVPTGWKKAKVTPLYKDGDKTDCSNYRPISVIPSFMKILEKAIH
TQVYNFLTEHKILNPSQSGFRPKHSTTTTLINVTDTILDNMDKGLLTGAVFLDLKKAFDTVSHEILLDKLRINGIQDNAL
LWFESYLSNRCQVTVVDGTISDCLGIAEGVPQGSVLGPLLFILYINDMPNYISHGQIVLYADDTALFYASKSVADINRAL
NADLCNIEKWLDANRLTLNVRKCKSMLFGTIRRLRLETEELNLTLSGTYLEVVACFKYLGVWFDSCLTWSIHINKLCSTV
SSRLGVLRRLVPILPPKTLSMLFNCMILPKIEYCDIVWGNCGKSLSDNLQKLQNRAARLVLGLSHRSHVDNDHLSALGWN
SLASRRKMHLLQTVFKSIHRQLPEYLQIFNRTSHTYATRLNSNLSLQLPKVRLESGRRKFEYRGAFSWNELPPTVKVASS
ALSFKKLLRNGNHC
>Crack-1_IS_pol#LINE/L2 1359-4197 via tfasty with CR1-20_SP_pol, 1 frameshift. [Ixodes scapularis]
MAVSEYVLPSEFEAFIGEEFSLSTHCLHINIRSAKNKRVDLECFFAELSDFEIIMLSETWYTDHTDVFRLPLYQVFFINR
SETRGGGVSILIKESVDCELVPSFTVITKDYEALSLRTKNDFVSVIYRPPGGALSPFLNFLSSLFDFANENKLNIICGGD
FNVNMLSNTVSKRELENLILINGCRTVINSPTRVNVTSKTLIDLFITNYEESRIRSGIITYDLSDHLPIFLCVKMNNAKK
KDPTPSAQVQCVTPDGLERFAECVANANWDDIFSKNDPDEAYNFFLERFKSLYQSNFPYKLIKVKKRIRKPWITVDLLEN
IKVKNVLYRKFTKTRDPNDLRTFKSYRNQLTNALRKARERYHYDSFRNSVGRSDLMWKNLNSVIEGKTSHCVECIISAGK
KLTGVSLANTFNDRFVDLPQINCRDAACDNITFKTRDSIFLLPVTDTEVSTVFMELKNSHSCDADGMQIRPVKYVLPLIT
PFLTYIFNLCFSTGVFPQLMQKARVSVLYKKGDKNDINNYRPISILPVFSKGLEKLIHIRLSNFFNKYRVITNDQFGFMK
HRSTDLALLEQKEFILESFEANQIALAVFIDFTKAFDYLNHNLLLKKLYLYGIRGQALTLLQSYLSNRKQFVYLNGFSSN
TKSVFSGVPQGSILGPLLFNIYINDIVNIDSLAKFVIYADDTTLLFSAKTSDELINCANDTLTGLQNWTSDNGLKINSSK
TKAIFFRTKNKSVFITKSLVINSNVIEIVENFKSLGVIFNQYLSWDDHVSYILPRLSRVIGLVSRNRFILPNNVKLLIYQ
TLFASHLNYCHLVWGTTTSSNLQKIHLLQKKFVRLIANVSYISSSKGLFEKYNLLRVFDMYTYKLMVRFKVEKKRNVDIL
AKLSKLREHVTSYPTRSAARWAVPLCHNNYSMQSLKYMLPTLLNFLLNKNVDIMSVTMQDLFSYLN
>CR1-70_HM_gag#LINE/L2 62-781   [Hydra magnipapillata]
MAKSLTIVKEFLECHESTLLKTFGERFDKLEEKFYNEIEKLKNENALLKREVAEVTKAMNFQNEYYEQIVKESNDLKGKL
NNYNKDNENLKCTEIIQDKLAELEDRSRRNNLRFDGFDEREEETWEDSESKVKEFLKEKLGIKNNIAIERAHRTGKKHVS
GKRRRTIVVKFLNYKDREIVLNEYKKRKLWNEKIYLNEDYSNRTIEKRRFLFTKAKELRAEGKFAKVIYTKLVTRASEV
>CR1-68_HM_gag#LINE/L2 187-975   [Hydra magnipapillata]
MEFDYECLEEPNWPTIPSASAEVTKNMHKWCGKISYIVSDLLKRLKILEDEKINNLTATTNKPTTIFTYAQATSIQKNQL
KPKETEVVMMAKITNEFNNKKRIENNIVISGVADHTTLDKQVNEENDKQTIETILKAIKPDFSITNAKRIIRLTKNAKRP
EGPPDLILVELENKETQNFIIKNSKKLKDSINFKNIFINKDKTANERLFESELRKVRNTRNAALAQEVEGTNGRQRYNVH
NGKKYYWGIRSGELKWIEIKST
>CR1-73_HM_pol#LINE/L2 897-3971   [Hydra magnipapillata]
AVKFLIMTMTETKYFEIFDKENTLLLNNNNDPDKNFFENDSFKSNYYSIEELSCFINASQNTFSALTLNIRSMSKNFENF
KEMLKDISHEFTVICLLETWCKDENTINSNFQLKGYKALHQTRSRGTGGGICFYIHNTIQFKKVESLSLLNANCELFTVE
LTNQGKANAYITGLYRPPDGNIKSFKKHIIQYLELAKNKHLYIMGDTNLDLLKIKTNNNVKRFLNNLLQHGVEPLINKPT
RVTLRTATLIDNIFTNTTIKCNIQSGIIKSDISDHFPIFLLLNNLNNKKENKTIITTKRQINEKSITKFRSNLSMENWDQ
VVNCKDTNIAYDIFKHTFTTLYEKAFPKLEQLTKLKNLKSPWMTKGLIKSSKKKKKLYEKFLKKKTFKNEKIYKQYKNLF
EKLKKHSKKNYYCNLLENYCGNTKKTWGVIKEVTGKKKDATKVFPQYLKTDENDTVANKAIDIAEKFNNYFIKIGEKLAN
KITRGKKCYKLYLEKKASVMNELEITPDELKNAFNTLQENKSPGLDDISVNVVKNVYDIIEYPLLHICNLSLKNGVFPDQ
LKLAKVVPIFKSGDDSIASNYRPISILPCISKILERIMHNRLNNYLVNHHLLNNNQYGFQKHHSTEHAVAKLVNEILNGF
DNNKYTLGVFLDLSKAFDTVDHKILLYKLYNYGIRNNNLKWFRSYLNNRKQALSYNNTVTRLEDITCGVPQGSILGPLLF
LVYINDIYLSSNILNFVLFADDTQVFFSHTNISLLFNTVNQELENLNEWFKANKLSLNVEKSKYILFTKLSKSETLPLKL
PDLLIDKTKLKREYSIKFLGVILNEHLSWSNHIKVIENKISKIIGIMYKTKHLLNTNCLKNIYFAFIHSYISYCNIIWAS
TYPSKLNMIYKIQKRAIRLILNANKYASAKPLLREIGVPNVYEINILNILIFMFKFKNGMLPSIFQTYFFSLNHKYETKY
STNNFIIPKTLSKQADFSISCRGPRLWNLLLTNNIKTLNSTQHFKRATKQHLFGFDTKQLLSYY
>CR1-78_HM_pol#LINE/L2 915-4181 No obvious gag in AT-rich 5end.  [Hydra magnipapillata]
MLIRNLCKFCNKTVVDSHKGILCNYCSSWLHPKCNYINKHTYSLIEKDSTDWYCSDCINKNLPFCSLSDFELSLTLSSQT
IPTNNLKSLKSPPHFKKLFNNINKISNKSINCKYYDILELNKVLNNNCNLYLHLNIASLPYHIDGLRSLISSLTTLPIVI
GISESRLNINDSSKTDVNINGFTIEHSPTEAKKGGALLYLRSNLNYFIRSDLIVYSPKYLESIFVEIVNPLKQNIIVGSI
YRHPSMNSNEFITDHFNPLLERLSLENKQVVLMGDFNMDLLNYNESKVISSYLDTLCSYSFFPSIIQPTRITATSKTLID
NIFLNFQTPDLISGNLTISISDHMAQFICIPCLSPKKTKEVIFRRTFQNFDNKKFIKDISNADWQIQITNNDNVNESLHY
FFKTFNKILDQHAPYKKLTAKQIKLKSKPWITNGILKSISIKNKLYKQYIKAKNHNIKIHIFNKFKWYRNNICNLLKLSK
KSYYINFFNNNLXNVKNTWKGIKEIINIKPSSFSSKSINLKFNGNTISDSKAVSNIFNNYFVNTQQTLLTKIVSPKCNFS
DYLNNPNINSFFIDPVTENEVSNLIKSLQSKKSLGINSIPTFLLKLVSHIISKPLCTMINSSFENGLFPDVFKIAKVIPL
YKKGSRTDHTNYRPISLLSNISKIFEKAMHNRLYNFLDKYQCLYKHQYGFRSKHSTTHALIEITEVIRKALDDKLFACGV
FVDLQKAFDTVDHSILLSKLEYYGIRGISLQWFTSYLYNRFQFVSINGNTSSLVKCTTGVPQGSVLGPLLFLVFINDLNL
SLKYTTSYHFADDTNLLLINKSLKKINKYINHDLSNLIQWLRSNKLSLNTSKTEIIIFKSKQSKISKHLNFRLSGQKINP
VMYLKYLGIKIDSNLTFSQHLKDLSIKLCRSNGMLAKIRHYVNLETLINIYHAIFGSHLRYACQVWGQIRTQEILRLSNL
QNKALKIIYFQHYQSNSDHLYFLSKILKIDDLVQLLNCHFVFNYKQKCLPSTFTNFFTVRESCRYHLRSANSYNLHVPNH
SSVKYGLKSIKYQSVKSWNSLPSPLKSIDSITNFKNCLFNYFLARYYT
>CR1-74_HM_gag#LINE/L2 24-825   [Hydra magnipapillata]
MAVTLSEIAKLFEGYKKEFELMLKQQEKVFIDIISGNLKIFNGRLEKVEKDIEELKHSLNYHEELIDEKVKKANVFSKED
NSEITRIQKKLREIEDRSRRNNLRVDGINENEGESWEESELKVKKVFEELLSVKNVQIERAHRTGKKESNKPRTIVIKLL
DFKDKVAILSKSSNLKGKNIYINEDFCSETTQIRKGLREKMKIERAAGKFAFISYDKLIIRDWVAKKSKNSSS
>R1-2_DK_pol#LINE/R1 547-3537  [Drosophila kikkawai]
MQLIQINLNHCRAAQDLLLQTVSEVAADVAILSEPYKAREGGAWAKDRQGGPLAXWRRTAADVQHPFSRXMRAEVSGFCI
YSCYLXPSLPLDAFSRIXDNLCSDMRGRAKVVVGGDFNAWALEWGSVSTNARGXAVLEAFASTDVVLLNDGMRHTFARAG
AASIIDLTFVSSAISQDASWGVSDAYTGSDHEAILCTVGAPEGTTRTLLRPRKAYRPDTLRTQAFANALDGMSAEALGEA
NEAANQIAAALEHACDQSMRLRGTCRRNQRPTFWWSDEIADLRSKCLHARRQMTRARGSSRLVECCEAYKSARRALKLAI
REAKRECFLRLCDEAENDPWGGAYRLVVKGLKAGSTAPSDPEALDSIVQALFPRGAPVVMTQPSAERHPNVDCEVSEDEV
IRTGRSVRTKKAPGPDAVPNRALKLAIALHPKEFATLYARCLQEGTFPERWKRQKLLLLAKPGKPPGEPSSYRPICLTDT
TGKVFEKVIAARLNAAIERAGGLSPSQFGFRKGRSTLDAIEMVKZIAETAITGTRWKGGSKNYCLVVTLDVRNAFNTADW
NRTLESLAALNIPGYLLEIARSYFSQRVLIVDTDVGSRVYEVSAGVPQGSVLGPLLWNTMYDGVLRLPMPSDTTIVGFAD
DVAVVVVAKERTAAEIKANAAIKAIESWLSSAGLELAAHKTEAVLISSRKKVETAEIQVGGAVIESQRAVKYLGVLLDTR
LCFKEHLQYAQKKASGTAGALARMLLNTRGPKQNARRLLVSVVTSQLLYAAPVWAEAAKKKSFMRGVESTYRLCAIRVAS
AFRTISDDAVLVLAGLVPLKELVREKSDIRAALHSQQGPERATTAELKSAARARSYGSWQARWDASPKGRWTHRLIPNIE
AWMERKHGEVDFYLTQVLSGHGCFRSYLKRFGHDTEDGCPECGSGIIEDAGHVFFECRRFDEERDELEAVAGSAIRVDTL
VPLMLSDQRTWDAVAEFSAKLMKSLRSLERVRNERTG
>R1-2_DF_pol#LINE/R1 522-3496 via tfasty with LINER1-2_NVi_pol, 1 frameshift. [Drosophila ficusphila]
MRVLQLNTNHCRTAQDLLWQTTAEHKIDIALLTEPYKDIESHRWITDTVKQAAIWITGNKTFQQKMTTGGGFVWAKLDGL
YYVSCYAPPRWSVEEFTSMMTSLELELRGKRPILLTGDFNAWSRTWGSDFTNARGRLVEETAAALDLVLLNAPGVHTFEC
ARGRSIIDLAFADRATANRATWKVEDSIHTHSDHKAIIMELSRGAPQAECRATRPKWKKSSFNLEAFKLAWQGTHLQGTT
AEAIAEEIAHKIEAACNASMTRGRYGGKRKPAYWWTSEIADLRKACIKARRRAKRATLRPTFAELHGVYRERKWELKKAI
VRSKNRCFREMRDRADVEPWGMAYQTVMRKVKGPSAPQPKCPILLEKAVLTLFPPQEETSVEALPTIEPGDVPPVTMEEV
LSTLRRIKDNKAPGPDGVPNMVFKAAVMETPHIFAHIYSTCLTEGTFPSRWKLQRLVLLLKPGKQPDQPSSYRPLCMLDT
VGKVFERVICDRLQEYLECPTGLSNTQFGFRRARSTVDAIRTVTDIAQNAISGGHRHMSYCAVITLDVKNAFNSANWSRI
LLSLRNLRVPSYLLRIIRSYFRDRILQYETDTGSKTYRVTGGVPQGSVLGPTLWNAMYDGVLRLKLPDKANIVGYADDIA
LVVVDKRLDLLEAKCTDAASRIQRWLRNAGLELAAQKTEAVLISARRKKEKMIIAIDGHEIVSQEAIKYLGVLIDTRLSF
KQHLVGVSGKASAVTRALTRILPNVGGPQGQRRALLSTVADSITMYAAPIWAGAKKSHLRGITQIYRQSALRIGCAYRTV
SNDAICVIAGKPPVDLLAEELSRLYSKQGVRPTREQKEAERARSIRKWQQRWDQSDDGRWTYKLIPQISEWIKGGHGDVD
YYTTQIISGHGCFRGYLHRFRLADSPFCPNCPNEIESAEHVAFHCDRFEEERRTLEAVLGHSPSAEIITHDMCSSRDKWK
AMTAFAYSVMTRLQELEREQRRTPELTTLTDA
>R1-3_AP_pol#LINE/R1 2142-5162  [Acyrthosiphon pisum]
MSAQPLTIVQLNMGRASAVSDLLLEFCQNNEVDVALVQEPYTNRGRLVGFEVAPFRCYLSKPTRRRGGLLHLDHGAAIIV
FNPNLVVAARDSDLIENFVSIDIDCAADGIITMISGYFKFRVPTAIHVEVLDRIFQSTTNEVLIALDANAFSTRWFSRIN
DRRGETLTTWLDEHDLHTVNTRSPFTTFNGPRGRTNIDVTIFGQSLLGKIGDWKVVPDVTTSDHQVLMYTLHLQRRQFIH
RTTRFNLDQRQRDAFVQEFARATTQRDDEHENLDSKAQHLHEDITVAAELFAPRRNPRKKVVPPWWSPELTRLRKEVRNA
SRRCRQTGDRVVYNTRRNEYTQLLRSSKVASWRRFCTLEGKNPWGKLYRWMKGNKATVAIGLIKRADGSLCQDIDESVTT
LLNVLIPNDPTRPVGVRTEAVTGNLNPIACPELKALAWTIAPNRAPGTDGITGSMVRALWLTLAPRLLSITNECLARARF
PESWKVAQVVPILKGKDRDVMQPKSYRPVSLLPVLGKVIEKVINLRLQEQITPSLTGRQYGFTRDRSTFDAFQNLLTWSD
LRQERHVLTIFHDITGAFDNLEWTALQRDLQSLGASNHIRLLIADYLSGRTAKITIGGVEKSVRLTKGCPQGSILGPVLW
NVTMEALLRVVFPEHVNIQAYADDVAMSVAAPNRRILIERAEEALIPVLAWAEERGLQFSAQKSVAMITKGDMVPGFTLA
FGGERIVTVDCVKYLGIRLDQKRQYTEHLDEMKKASETIFTKMRGTLGSGWGMKRENIAILYRGVFLPKITYGARFWAHT
TTSNRAIKLLGSIQRRALIGMTGAYCTMSTDALQILAGVPPLDLEIHWMVLKAEAATIPNHLRPQTLANGREELLEAWQA
RWAATQKGRWTYRIFPEVRNRLKLPLALGHEVTQFLSRHGNFRAKLAGFDLQPTPLCVCGDGEEDVGHVLFDCALHIEHR
AHLELAVHRAGYLWPCDPAVLVSTKRIYSALVRFAKTAAYLERTVRA
>R1-4_DBp_pol#LINE/R1 1857-4838  [Drosophila bipectinata]
MRFIQINLNHCEVAHSLLEQVLREKRADIALISEPYKKGETQSYILDSSKTAAIWAPGRQPESVQPREGFIRAKVGAFWL
YSCYLPPRLTLQQFTHTLDEIAQDARHRSQVVIAGDFNAWAEEWGSSRTNARGRTLQETFATLDVALLNTGSQNTFSKAG
YGSIVDLTFCSSGLFRRTRWSLSDDYTASDHKYIVCDIEDRAQASTTAKPPRFNPATLQPQIFAQELRIPDPSGDAERDV
HNTMAAVLQACRASMRCSRGHSRHHEPVPWWSPEIAHARRECLRTRRLHQRARGRPDFEQKREDFAAKRKILKKLIREAK
TRCFLEMCDAAEQDPWGSAYRTVVKKAKQAKPIAPKEAATMRAIVEHLFPTQPREWSPVPSGAREPAGSTPAQEIGAHEI
VEVAKAIQVGKAPGPDGIPDSAIKLAMTACPDRFARVFNACLREGVFPRRWKVQSLVLLPKPGKPPEDPSSLRPICLIDH
AGKALERCICRRLQEAVIRAGDLSPLQYGFREHRSTVDAISLVRRIAAKAIEGTRWAGGSKEYCLIATLDIKNAFNTARW
DVIVEALRNLRVPTGIVEVIRSYLSDRTIRYETTSGIREHAATCGVPQGSVLGPALWNVMYDGVLRLELPERTHLVGFAD
DIAVVVVAKTIQEAEEHCNAAIAKVIGWLEQAGLSLAHHKTEAVLISSRKRVETATINVGGHVVTSTRAIRYLGVTLDTR
LSFREHFAEANRKAANVARALGRIMLNCRGPKQGRRLLLQTVCSATMLYAAPVWAEAAKTRSYTKGLTSTYRLCALRVCS
GFRTISDDAALVIAGMVPIDLLAAERQELHQALAALSGQAPAATRRRLKESSRATSIQKWQQRWDESTKGRWTHQLVPDL
KKWLQRSHGEVNFWLTQVISGHGCFRSYLYKFGHDDDPRCPECGVDETAEHVVLDCPRFSVPRRRLLGEVATADLIGRRL
LEDAQFWAGMSSFAALTMKELRRLERLRAEARLA
>R1-4_DAn_gag#LINE/R1 349-1965  [Drosophila ananassae]
MMYTNDITPGGNHSSGNPPVGKPTAGARILEAPKHIPKPTDEAVASLAAPADPATSQNVEQSSAFMSSSKILRSPILQAA
RTAARKEPNAEKETPKRARDTSSPSEPQRATPAKKTKAASERSCAGMLTELEGILEDIILQTHEKQVRSINLKMKRMFCR
MKELQEGLSGALTCQIDESQPGSISETICSRCGQQDVPMADKQAQTLPLRRKEVSVQTEPWRRLSQDSTKTHLQEEQQAP
AQALRKSARLGPVQRTVNRPSNGRAEGAGLSTPADAAEAGPRWETAKRKKPRTTTRPDALVVEAKGLKYSEVLAMVTRRQ
DGQLNDFSQDVRKVRRTASGNLLLELNKNRTASTDVMRENLEKVLQGAAEVRALSEDSKLRFMELRDLDPLVNEGDIREA
MVEQFNLAGDAVLIRSLRGTSRDTQTAIIGLPNKKAAEVASKGRVRIGWTVCRIRERDNQPRCYRCLEVGHIAGKCRSTT
DRSGCCIRCGEKGHKIARCPNESLCFVCAERGERDTKHQAGSRRCPHSKVAVQARAGWK
>R1-2_DEu_pol#LINE/R1 2089-5064  [Drosophila eugracilis]
MKFLQINLNHCEVAQSLLEQSVTEQNVDMALISEQYRNKNSGEWLANNSKKSAIWSCGNPMRQISRKKSGNCFARAHVNG
IAFYSCYLPPSLTLPQAITALEEIAEDARENRPTVIAGDFNAWASEWGSPRTNARGKALLESFAALDLVLLNSGTKPTFS
RAGTNSIIDLTFVSAGLAPGCSWEVSDIYMGSDHAAIICTIKSRNSPTRVPKTVSGYKVETLDAEMIQMLFEDLSTSGSA
EERANHIADYTRLACDASMQEKRKNPSKRRPAYWWNRDIAEVRKECHRARRAYQRSRGRPEFETLQIDYRERRRALDNAI
KESKRRCFNMICDEIDSNPWGFAYKLATKRLRVYSRPPPTCPASLRRIVETLFPVQVSTARTPPTGNIASIKPTSAEEVL
GILEKILDDKAPGPDGVPNKVLKIAIRANTKEYVDMYNACLTEGVFPRRWKTQRLVLIPKGDKPVEEPSSYRPLCMLDTV
GKILERIIHSRLEGALAETNGLSEMQYGFRKGLSTIDAVGKLCEIADKAIEGKRWLYGNKQYCIAATLDVKNAFNSASWH
HTLNALRNLSVPAYIQNIISSYFEDRLLLYETESGQATHMVTGGVPQGSVLGPLLWNVMYDGILRIAMPEGAQLIGFADD
VAIVVTAKKLPDAEEICNEAGKRASAWLDDKGLALAAHKTEAVLISSRQKVETATIRIGEAIIKSSPSLKYLGVMIDHRL
SFKDHLAYASGKAGRTAAAISRIMANTRGPRQPGRRLLVSVVTSTLMYAAPIWARATKNGSYRQDGDSVQRLCALRVCCA
FRTVSYDAAMVIAGIIPIDLLAEESANIRAGSTGVATAESLRKRCRELTISKWQERWVNSSKGRWTYKLIPDLQRWLGRK
HGHVDYYLTQLLTGHGCFKHYLNRFKHERYPHCPLCESDNEDAEHVFFVCPRFENERLDLSIRVGRTPAACNLVEIMLES
EVNWSAVSNMATIVLKKLRIAERLRNSNRIES
>R1-1_DBp_pol#LINE/R1 444-3406 via tfasty with LINER1_pol, 1 frameshift. [Drosophila bipectinata]
MKCTQLNLNHCEAAQSLLRQAVRDEQTQVVLISEPYRSIPGNGWLASSCKGAALWSTETAPQDIRTSSEGFVRAKINGVT
FYSCYAPPRWEISRYQRMLRSLVADARGRSPVVIGGDFNAWSPEWGSRAPNERGTSLLEHFAALDVVLANRGQKLTYSKA
GRGSIIDITFVSSALIRRCNWEVSDAFTFSDHQAIHFTLGGVSRKRIPKVTGPKWKDTRLDREALSVTLQALDRTSSSSP
EGAAEELSGSLAHACDSAMPRRKPSRRGAPVYWWNQDIQQLRTACLRARRRFQRARGSEDLTTRTEEFKAAKRALKLAIK
ASKRECFKKICDEAEVDPWPGTAYKVVMKRIKGQEHLRPTCPTLLRKIVEALFPKHPPKRETIPADDGEPFTPVTEEEIR
SYAKKIKAGKTPGPDGVPNSVLRQAMQEKPEVFAETFNKCLQHGTFPKKWKRQNLILLPKGNKATDDPSGFRPICLLDTV
GKVLEMAIATRVSKFAEAKGTLSVSQYGFRKARSTVDAIKAVTDTAEAAIAGTRWKWGDKEYCAMVTLDIRNAFNSANWT
RIQRALFLAGTPRYLQLILSSYLSDRTLLYDTDEGPKSYEVTAGVPQGSVLGPLLWNIMYDEVLRIELPTGCKLIGFADD
LALLVVAKETKDVETNASEAIRRISTWMSDSGLDLAAHKTEAVLFTSRKKVEYITIQVGNCCITSKEAIKYLGVMLDNRM
SYGAHVEYSTIKAARIQGALSRMLPNVGGPKEGRRRLLASVVTSVLLYAAPIWAASVRRQQGLKKKLGASYRLAALRVIS
GFRTISEEAALVLAGMIPIDILANEAEEIYASNRQRGRNSSREAIKKSARQAALSSWQERWDSTTKGRWTHRLIPNIQEW
IGRNNGQVSYQLTQFLTGHGAYRKYLHRFGHDESPVCPNCPGADEDPEHILYNCRRYRAIVGSLPDPEQLVEFMCSSQEQ
WNWVSQLIAYTQGDLRRLENERRLRENA
>R1-1_DBi_pol#LINE/R1 633-3719  [Drosophila biarmipes]
MFSFIQANCGRGRCAVIELAKRMRDAGHLFALIQEPYVDAGKRLTGLPGGMRIFADKRKKAAIIVDDPSAICMPIETLTT
DYGVCVSVTGKYGTIFLSSVYCQYSAALQPYTDYLDTVLLLASRTPTILGLDANAVSPMWFSKTPANSGDRLNRERGQLM
DEWIIASGACVLNTASQVFTFDNHRSRSDIDVTFTNEAARVWATYEWRVDFWELSDHNIITVEVTPDPSSTVESLAPVPQ
WRLSNASWRRFRVELRDAAECLEELEESPLDDHVSALRSIVHEVCDRVIGRRIPAARGNVIWWNPELSTKRQEVRRLRRR
LQAARRSGTDDVERLAAGLRLASGQYKKLILTTKEQNWRDFVGRHKDDPWGHAYRICRGRKKTADLGCLRSNGALLTTWH
DCANILLRNFFPVAESTVREDITPAAPPTLEAFEVATSVAKLRSRRSPGMDGITGGIVKEVWRAIPQHLTKLYSRCLSEG
YFPAEWKHPRVIPLVKGPDKDRSDPASYRGICLLPVFGKALEGIMVNRLKDVLPDGCRWQFGFRPGRCVEDAWMHAKNTV
SNSRERRVLGIFVDFKGAFDNVEWNAVLDRLVDVGCREIDLWKSYFSGRSASIISSYEAATVSVTRGCPQGSVSGPFIWN
LLMDVLLQRLEPHCALSAFADDLLLFVDGNSRADLERKGEQLMDIVGAWGAEVGVSVSTSKTAIMLLKGNLSHTRRPTVR
FAGASLPYVTKCRYLGILVGERMSFLPHISSLRDRLAGVAGGLARVLRVDWGLSSRAKRTIYSGLMVPCALFGASVWYKA
ASRGKSLRLLTSCQRTILLGCLPVCRTVSTVALQVLAGAPPMDLDAHRMAVKFKLRKHVPLDESDWLHGQDLSVLDWKSK
MALLDECLLNEWQLRWDQAAHGSVTRQFFPEAAFVYKRKNFVFTLRAGFLLTGHGSFNAFLHGRTLSTTTACSCGEVSED
WLHVLCECRLYSDLRDLDALGVVRVQERWNVAGVVETPERMRLLGAFADAAFSRRRMEATRDEPQAPGQ
>R1-1_DSi_pol#LINE/R1 439-3432  DMRT1C_pol near-identical. [Drosophila simulans]
MMRLIQLNLNHCTAAQDLLVQTVRERRVELALLSEPYRTPASPDWAFDRTKKAAIWRCSRETQQITDVLSDIGFVRARVG
RWWVYSVYLAPSLTLIAFSRALDRLAADARGRTQVLIAGDFNAWSESWGSSTTNARGRMVLEAFATLDLALLNHGNRHTF
RRAGLGSVVDLTFTSGSSYRLARWRLSEDYTGSDHLAIICDLGSPPSSQAQTPAQARIKYKTDSLDTQVFREQFLPTASR
QGAELTAVELMRRLKAACDASMQSSRPHSRQRAPVYWWNQEIETARRECLSARRRYQRARGAESFAERQSEYRARRKTLK
LAIRESKRKCFLDLCDSADSDPWGSAYKVVVKKAYTRTPKLLDPAMLRSVAEHLFPVMDGLRPADPATGDHVDSDATVSS
DEILELAKLLKDGKAPGPDGIPNRALRLALHLQPDSFAKAFTKCLEEGVFPSCWKIQKLLLLPKPGKPPEEPSSFRPICL
IDGTGKLLEKLVCIRLERAIADAGDLSRSQFGFRKARSTVDAVNRVVEVAAQAIDGTRWKGGSKEYCLMVTLDIRNAFNT
ARWDRILEALIGFSVPAYLVRIIRSYFSDRVLLCESSEGVFRHQVTGGVPQGSVLGPLLWNTMYDGILRLPLVGRSEIVG
FADDVALLVVDKYPGKAEESCNQNIRAIEHWLSSMGLELAPEKTEAVLISSRKAVETATVEVGCTKVSSSRAIKYLGVMI
DTRLSFREHLAYANSKAAGVNRALSNIMLNSRGPKQASRRLLTSVTRATMLYAAPVWAKALGTESYAQGLNATHRLSALR
VCCAFRTVSNAAALVIAGIPPLDLLAKENEVVFNQTHGRRLSPGVKKAIRAEARQHTLETWQHRWTNEPKGRWTQQLIPN
LKPWLERKHGDITFHLTQLISGHGCFRSYLMRFGHEDADDCPWCGGGRSETAEHVLFSCVKYARERSSLETVLGGRLNAD
NLVPFMLQGEAEWQAVNSFAAAITTELRRAERARRVHE
>R1-2_DEl_pol#LINE/R1 1990-5001  [Drosophila elegans]
MPYEQKTVRKVKILQVNINHCEAAHDLLKQTVREIQADVAIISEPYKKTPGPDYVLDTTKSAAILTIGSSRPQHLRAGSF
FIRATVNEVAIYSCYLPPRLSLQEFAAVLDELVDDARGRRNVIIAGDFNAWAVEWGSVCTNSRGRTLLEAIASLDVALLN
SGSEHTFSRAGAGSVVDLTFISSSLFSQARWRLSETYTASDHKAIICDIACGRPATTVPTNRRFNPKTFQEDAFLRGWRD
PETGEHAESSSARLMGAMVTACKASMRETRSHHRNLEPVFWWTGEIAEARSDCLRARRRQQRARGRPNIELRRLEYAESR
RTLKRLIKQSKKKCFLELCDSAEQDPWGSAYKVVVKKMGQVKPLGAGEASHMKTIVEHLFPTVTSVPQRAYAEPADTSPI
RIHPDEIKKVARDMPXGKAPGPDGIPDTAVKLAMTEHPEAFANVFNQCLAENTFPERWKIQKLVLLPKPNKVPEDPSSYR
PICLIDHAGKALERCISHRLQAAISASGDLSPMQFGFRKAKSTIDAISALKGTASKAIEGTRWRGGSKEYCLVVTLDIKN
AFNSARWDITLEALHQLGVPESLVGIVQSYFSDRTLLYDTNRGVMEHKITCGVPQGSVLGPLLWNAMYDGVLRLALPGRS
KVIGFADDIAIVIVAKTLQDAERLGNDAVAIIEEWLLAVGLNIAHHKTEAVLISSRKEVETAKIQVGGCTITSTRAIRYL
GVMIDTRLSFREHLAEANKKAANVARALSRIMLNTRGPKQGRRLLLQSVTRSTMLYAAPIWAEAVETQSYRKDLESTYRL
CALRVCSGFRTVSDDAALVISGMIPIDLLAVEAKEIHEDIANLGRQCTPSQRREIKAKARGKSLDAWQTRWQQSTKGRWT
HRVIPDIKKWMQRPKGEVNFWLTQILSGHGCFRSYLTRFGHDDDPSCPQCGVEETAEHIIFTCPRFDRDRDEFMGETRDP
TALGDRMISDEVFWGQMSNFAAVAMKALRTLERQRDRVRRGTSS
>R1-2_DBp_gag#LINE/R1 940-2547  [Drosophila bipectinata]
MSSKNEITPGGSHRSGNPPVGETTARARILEALNNIPIIPDKAVPHLAALERNTTSAEELKSAKTGDPFKKSNKMRRSPL
FAPQAGSSAGTGSPAAVEKETPKRPREMLSPDKDQRAAPPKKNKAGSPPARSEECLTELGTIVNELLSWVTEKNKRHISA
MQRSLITRLKDIHSILVGSVPEEHARPAIMPKPVCPRCERAGIDTAEKEQQTLPTEVWTQDQAVQTGSIPNSTGPRSAHR
DSGAKVATANTAARPKPAVANPAADKGSDGEASRRRSEWTKAKPRNPERRRARPDAIVIQAAGMTYSQILSMVTRREDGK
LDDLGPCVKKVRKTAKGGLLLELARKKESSTQALKGCIEEVLGSKAEVRAYSEETKESLVELRGLDALATSEDIIGAIAQ
QAAVDQGALKVKKLRSSYGETQTAIVAFPASLAKAIIAVGKVKVGWSVCHMREKEVVARCYRCLGMGHIASACKSSKDRS
GCCFRCGDSDHRAATCKKDPRCFSCEDKGRKDVRHQTGSRSCPMSAKGGGPRTTGC
>R1-5_DWi_pol#LINE/R1 691-3678  [Drosophila willistoni]
MVKFMQINLNHCEAAHDMLKQTTREQNIDVVIVSEPYRLHGGNNTTCSTQRKAAILLTSVRPLQMSQTRAFAHFVRAKID
RFWVYSCYMPPSINHQEFCAALDELATDARSHSPLIIAGDFNAWSLEWGSVSNNARGCALWEAFALLDIALLNSGNQNTF
SRAGVGSVIDLTFVSSSIFRRSSWKIGEFYTASDHEAILFEIGGSIRQRDVHPVACKTYKADTLNVPQFTAAITGIELAT
ESAQSMANQLARKLDEACGKSMQERKAYRGHHRSVFWWNDSIAEARRACFRARRCYQRARKRNDGNWPSLHIVFARTRKA
LKRAIHSSKRECFLELCDSADKDPWGKAYKIVVKRVYANKKTAPTNXEQLRDIVQSLFPARSDALTCRRPMQTHFAVDVV
SNEEIKAAAGRLNPSKAPGPDGIPNRAVKLAMMLNPDIFAQVYSQCLREGCFPDIWKLQKLVLLPKPGKSLDEPSGYRPI
CLIDTIGKVLESIICARLESAIRLGGGLSPNQYGFRKSKSTTDAISRVVDIASEAIKGERWKGGAKKYCLLVTLDIKNAF
NTADWGSILDALQNFGVPAHIHAITWSYFGRRQLEYTSDAGSVLHSISGGVPQGSVLGPLLWNIMYDGVLRLTLCDSCQL
IGYADDVALVVVKKEIKQAEAAANMAIAKIVEWLGSVGLKLAAQKTEAVLISSRKLVETAQITVEGTTVQSKRAIRYLGV
WIDTRLTFREHLANIQEKASVCVRSLSRILLNTRGPKQETRKLLTTVHSSIVLYAARIWKSALLVESYSRGIRSTHRLCA
LRVCCAFRTVSDDAVLVLAGMLPLDIQADEDTVVAAAPSDEPSKKLARAQARGRSLITWQRRWDASQKGRWTHLLIPNIE
KWLGRKHGSVNFYLTQILSGHGCFRQYLHRFGHEESPMCTVCSDNSVEDAQHILFRCRRYESQRRHLELTAGAGLTVNNL
VDSMVGSPQTWEAVNSFAAYVMRDLRQSERMRAGAS
>R6Ag3_pol#LINE/R1 gi|28569876|dbj|BAC57914.1| reverse transcriptase [Anopheles genus]
MVKLIQHNQNHCGAAFNLMWQTAREREVDLFIVADPVKNQRHNNNIVYSEDQLAAIVTCGNLPIQKIVNKASRGMLAVEV
GGILIVSAYAPPSWTVQEFEELLDNIVLTVSGSSKFVVAGDFNAWSSSWANTLGARGESQRLRGDTLLAAFAGLEMVLMN
NGQDTFVTPERKSAIDLTFVSQSLMETTGWEVLPDYMNSDHIGILITIGKEQTPSPRDNAKKGWKTTLYHKELFAAALDR
ILHEMRVDTPDDLVKALDKACDATMSRLKKTCRWRGVYWWTSVIADLRRKSKAASRVAQRAYDTPEFPDKRREYKLARNA
LKREIKRTKKATWYRLVNMSDIILFGEVYVILKRMVGGNRVPKELDPEKLNTIIDELFPSHPVTDWPTHQPTTSQENPES
VTDEEIRNIGRSLKSRKVPGPDGIPNAALATAMIEEPTIFKKVYQRCLDTGVFPDNWKKQRLVLSIPKPGKRPGESGSSR
PICLIDGVAKGLERVILHRLNNHIERVQGLSENQYGFRKGRATTDAIEKVLSIASASRARNRGANRFCAVVTLDVKNAFN
SASWTAIARSLQRINIPKYLYDIIGNYFRNRVLLYETNEGNRERVVTAGVPQGSVLGPTLWNLMYNEVLGLTLYDGASLI
GFADDIVLVAVGSRIDDLENTIETSINIIRQWMESVELQLNISKTEYILVSSHRSRQESQIIVEGHTIRSSRHLKYLGIM
IDDRLEYTQHIKYVAERAVTNTNALVRMMPNRSGPRSSRRRIIANTIIAGIRYASSIWAESLKFECRKQWLRRCHRPLVN
RVISAFRSTSHDAACVIAGMMPLHILIDEDYRVRQRSITTGVSSKLARIAERPYSVEAWQREWSTTTSGSWTRRLIPNIQ
PWITRRHGNIEFHMSQFLSGHGFFRSHLHRMGYVPSPVCPACGDENQTAEHTIFICGMYLLTRLRLEQDLQADFDVENAI
NIMCSDEVTWNRVAEYVHEVMENQYNLQCSYRGNSDRELQNQEAASQETSPERAGISMNEDN
>R1A_DS_pol#LINE/R1 1-2232 [Dugesiella]
YAFAQVEIDAVCKSLPRKKAPGEDRFTYEIVRGLHEALPRLLGALFNRCLSLKVFPNEWKKGELALLAKIGKDVNRPNAY
RPICLLPALGKIYEKLIVNRLWHFVTINKALSDNQFGFVPYRSTTMAIDKLLGTFRHFEDERCVTLLVSLDISNAFNSVW
YPSVLRYLRQNRFPGNLIDIIVDYFRDRTISVRFGSTRVTRNVVRGCPQGSVLGPLLWNMVIDPVLRERLPGGAILQAYA
DDLVLAVPGKSRVDLLGKAVDCLSTVREWAGRSKLALDTAKSKAMVLNSKYRSLDLSHHLVGGIKVEKELKYLGLIIDSD
LNFQSHFKAVSARVNRFVHNLRSMTVRANGICPDAIRTYYHQVLRQWMSYGAAIWFPGHIKKFYDRFNAIQRSALILATR
AYPRALLRHYRRSVASCQDLQMWRSVYNTQLLHLQKVTMVDGRSYHPTMFQQRANRFSIHPGKWIAIEWSNFGSPSTVSD
SDKLARHQIYTDGSKSESGTGAAFVVFRNGELWMSRSYKMTASNTSSQAEILAIWKALQWLLADGVGIKSCAVITDSQSS
LQALANPSCDWLLVMRAKAAYRQLLRNGVAVRFFWTKGHATCEGNKIADSAAREASASGLSIEVPLPHSYFKSVTAKMAY
RLWEQRWRASNGSSATHLFIEVPTSKSWSNCSEMTQVLTKHAQYPEYLHRRGVINSPRCVCGEMGSLDHYLAACPETLCF
RQKLTSRCSTYADLPRLSGFPLI
>R7Ag1_pol#LINE/R1 gi|28569879|dbj|BAC57916.1| reverse transcriptase [Anopheles genus]
MEVLQINVNRSRSAQDLALNTMRVERADVCLMVELHSVPRNNGNWVADRDGKVAIIASSETYPVQQVVSVTQSGIAAARI
NDVLFICCYVSPSAGVSEFEEVMQRIDVLARGHPRVVFAGDLNAWHTAWGSCRTNAKGEAVVQLVDSLGLEVLNTGTAPT
FLGNGVARPSVVDVAFASSSIAGVNTIPEHRWRIISIYSYSNHVYIRFAVGELLQRPAADSRRQEGPSTRESGTRWRTRH
FDAELFGVALDVASFTERVTSAESLERVMTEACDAAMARVFPSQGHSGRPAYWWTPAIEVLCENCRLAKERLEAAIDEEE
QIAAASDLLQVRTALDSSITTSKKEHFDEILRGLAEDETGQWYRNVLSRLSGSWTARERDSSVLEVIVSTLFPQHPPVDW
PASPGQVLERGEEEPVRDVNEQELLDIASSLNPRKAPGLDGVPNAALTAAIRKHTDIFKKLFQECLDNERFPDEWKKQKL
ALIPKPGKPPGLASSFRPILLLNNPGKVYERLLLSRINDVIEDPESPRLAENQYGFRRGRSTVQAIQLVVDAGSHAMSFG
RTNNRDKRCLLVVALDVRNAFNTASWQCIATALEDKGVPRQLRNILRDYFANRELVYDTADGPVTRRVTAGVPQGSILGP
TLWNIMYDGVLRVELPEGASVIGYADDIVVMARGCTPQEAALVAEQAVDAIAAWMEDHHLQLAPEKTEGVMISSLRRGQL
KVPFRVGDTIIHSKQSIRYLGVQIHDHLSWKPHVELSTAKALRVVGVVTAVMRNHSGPQVAKRRLLAAVAESIIRYAAPV
WSEATDLQWCQRKLAQVQRPLARGVTSSFVSVAYETGVALAGLVPFRLLVREDARCHRRLLAAPGASRKDIRLEERQGTF
QEWQRAWDAAAAAPTASRYAVWAHRMIPDLHLWMSRRHGEVDFHLSQVLTGHGYFREYLHVCGFAPSAECPRCPGSVESV
AHVLFQCEVFHEIRVELLGYGTSDPVNENNLGMKLLESPERWNSIQEAARKITKVLQQLWREDELQLNLQAHLAALPTRA
AAVDAGPLDGEQVSVDGVAELFRSNRGRARRTRRGRRRAEERVEVRLASAMAAAEREREDSILMAAVRAEEAGEAPPPIP
MRRRGLPPSPRTVRARHERRLYLQRLYRQRAREGTLPTVPHGRNRRSRSAPSEADTIRRRMRRREMERLRRTARRVPSNQ
GVREVLSADALAAITEATTSGR
>Waldo-3_AAe_gag#LINE/R1 891-2339 [Aedes aegypti]
MEESIIEIEEGAANPFAKGGLVRSPPSQLGQQQRNQEEQQVQRQLQQQQQQQPREQQQQLQQQQQAQVSAWSKVPKLPRV
VAAKKLVDELHEFVDKRSNVHKDIKTLVLKIQGTLGLAVKEWAAVAQKVESTEKELSAAKTALEIRQVPIQQTAMPITFA
RETNAKRDKSQRTESVPFTPKRPRASPGDARPGGSKKHKDTRVNESGPANAATTKEGNDTPWKIVKAKNRKTKTKSRSEK
QSLFKGRKRGEALIVKASDDSYEKVLRAMRTNPELEQLGADVRKVRRTRTGDMILELKRDPMASSSSYKELAEKAMGNTV
EVRAVCPEAVLECKNLDAISTDDDVRVAMKEQCMLGEVQMQIRIRKGPSGMLIASIRLPIEAAVKALKTEKIKVGWSVCP
LSVSQKPEACYRCHEYGHLARFCKGPDRGNLCRRCGEEGHKAQACRKPPKCMICANGDNNNHVTGGLRCPAFMKATATKP
QWR
>RTAg3_pol#LINE/R1 2669-6190 gi|28569855|dbj|BAC57900.1| reverse transcriptase [Anopheles gambiae]
MCGLRWTSSHRAHELRTSGFAFNLKVMQINVDHCQAGQDLALQAAREHRADVLLLSDIYRPPANNGRWAYDAAKSVAVVA
TSSYPIQRVLRSAVPGIVAAQIGGIVFISCYARPRRPEEDYEGFLAAVQLEASTHSQVVIDGDFNAWHTEWGSARNSQRG
EDLLQLIQSVQLQVINSGNEPTFIGRGAATSSVIDVCFATPSIARPETWEVHEFARSDHQLITYSVGEAEQQSRGLSTGG
PSAGRQRVICAGRRWITTQFHVDSFRSALEDVNFAEQATTHAGLVDAMVDACDIVMQRAPNVLQHQHRDVYWWAPVIEEL
RNECIAARERMRLTTDLQERSLAAAEHRTAKTRLEKAIKVGKRAEFAKLIDIAEENELGVGYQVVLSHLRGSRVPPETDP
VELGRIVTDLFPTHPPVYWPETDDVDSGASDFDRVTPEELQEIAAHMAIRKAPGLDGIPNAAVKVAIEKYPGVFCRVYQD
CLNTGTFPQQWKRQRLVLLPKPGKAPGESSSYRPLCMLDALGKVLERLILNRHLEDPDSPQLSDAQYGFRRGRSTISAIQ
SLVDAGKASRSFGQTNNRDKRCLMVVALDVRNAFNTASWQSIANALREKGVPSGLLRILQSYFTDRELIFNTSEGPVVRC
VSAGVPQGSILGPTLWNVMYDGVLRIPLPDEAKVIGYADDLVVLAPGRTPEESAAVAEAAVSAVDQWMQQHHLELAPAKT
EMTIISSLKHPPSHISIDVRGTAVPYSRSIKHLGVLVHDHLSWIPHVTAVTQRAVQIAQAVGRLMPNHRGPKMSKSRLLA
AVADSVMRYAAPVWHEALNTRECRRLLERVQRKSAIAVARTFRTVRYETAVLLAGLLPICRAICEDTRVHSRRGTAAGAQ
LRKEERETTIAEWQATWDSDAAGHQASGYVRWAHRLIPDIGAWQSRKHGEVNFHLSQIISGHGFFRKYLADMKFTSSPDC
PNCPGVRESAEHAMFACLRFAEVRERLMDGVNPDTLLTHMLQSQQNWSNVCEAAKQITTILQREWDDFRTSLFEQGVLAD
NAQLRNADVLRQERLRRYNETRNAARRAATQQRQAERLPPPPPSPRTERRREVNRLAVARLRERQRAARAEMHGAYQPAP
SNDSDDDDDDVENRQATNAASTSEAARTAAEESRVGLTEAEAAAAVEAELSSR
>R1A_DAn_pol#LINE/R1 2090-5155 [Drosophila ananassae]
MFRFIQANCGRGRAATLELAVRLRESGCLFALLQEPYVGSGTSDVLPEGMRIYTDRRQKAAILVDHQDVICMPMEPLTTD
YGVCVSVKGSFGSIFLCSAYCQFDTELEPYLRYMDAVLLQASRTPAILGLDANAASPMWFSKLPRNPEGHANYNRGELLS
EWMLENGAVALNQPSPVFTFDTYRARSDIDVTIANDAASMWATFEWRVDEWELSDHNIITVVVTPTTTRAVESLAPVPSW
NISNARWQLFEQEMVSRAADIPEDFSQSPLDQQVSTLRCMVHDACDLAIGRRTPRSPRRRKPGWWTANLNTAKREVRRLR
RRLQNARRRGDDDAAELIVVALRQASDDYKKLILRAKEDSWRRFVGENAHDPWGRVYKICRGRRKCTEIGCLRVDGELVT
DWGDCARVLLRNFFPVAESDAPIAGAEEVPPALEEVEVDACVARLKSRRSPGMDGINGTICKAVWRAIPQYLTALYSRCI
QSGYFPREWKCPRVVALLKGPDKDRCEPSSYRGICLLPVFGKVLEAIMVDRVREVLPEGCRWQFGFRQGRCVDDAWRHVK
SSVAASPARYVLGIFVDFKGAFDNVEWSAALRRLADLGCRELSLWQSFFSDRRAVIRSSSGTVSVPVTRGCPQGSISGPF
IWDLLMDVLLRRLQPYCAFSAYADDLLLLVEGNSRAVLEDKGAQLMSIVEAWGTEIGVTISTSKTVIMLLKGALARTPLV
RSAGANLPYVRSCRYLGITVSERMNFFMHIASLRQRMTGVVQALARVLRVDWGFSPRARRTIYAGLMVPCALFGASVWYV
VTTRQVVARRRLLACQRLILLGCLPVCRTVSTLALQVLAGAPPLDLAAMKIAVKYKLKRGYPLEGDDWLYGEDLSGLSWT
QRVSRVDECLLSDWQSRWDDGDSPGRVTHKFIPDAGFVYRNPDFGFSMRAGFLLTGHGSFNAFLHRRALSDTAACSCGDP
NEDWEHILCACPLYADLRDLDGLGLQHVGGTWTFGRILESGDRTRRLTEFAEEVFRRRRGLQ
>R1-11_DWi_pol#LINE/R1 1162-4020  [Drosophila willistoni]
MSRGGWIQSLDGGSAIWACESSPCQLENNHAAVGFVRAELSGVRIYSCYLAPSLTADAYYGILDALIDDARGHEKVVIAG
DFNAWSVDWASTNWRGRAVLEALASLDVVLLNEGSQHTFNRGGAASIIDLTFASSGLFNSIKWRISNHYTGSDHEGILCD
IGANSNRAATTRNSCKGYKAETLNPQLFAESLVINTTNDPETAADAVTTCLTEACNRSMARRGTYRRHHTPVYWWSNDIA
AARRDCHIARRQYSRSGGSDNADTLRQQYKAKRKILKRAIKDSKRTLFLELCDTADTDPWGKAYNTIVKKLHGHKQQAPT
DSEKLGRIVSSLFPAVHDPAETQDPSATPAEYDVEITVREVIDAARKIADDKAPGPDGIPSRATKLAVSLQPEAFAELFN
LCMRSGIFPSRWKIQKPVLIPKPDKPPXDPSAYRPXCLLDTLGKVFERVICSRLEVAIREVGDLAPLQFGFRRARSTVDA
IKTVVDIAANAIEGTRWKGGDKEYCLIVTLDVKNAFNSARWNKILAALEGFGVPMYLTRIIRGYLSNRTLLYSTDDGLRT
HHISAGVPQGSVLGPTLWNVMYDGILRLTLPAGCTMVGFADDIALVVVAKHLSLVETNCNEAVLMVKSWLDRMGLELAAQ
KTEAVLVSSRKKVETASIKIADETVASKRALRYLGVIIDTRLSFREHLAMTNTKAAGTCRALSRIMLNSRGPKQWRRQLL
MTVLKSVILYAAPIWARAAATPSYXRGLAATYRLSALRVCCAFRTVSTEAALVIAGMPPIDLLALEDQEVFLAVRSNNAT
RRVARTEARQRTIDRWQRRWDEALNGRWTHSLIPNIRAWIGRNHGQVSFPMTQFLSGHGCFRSYLHRFKIDNSALCTWCT
EDIEEDASHALFTCGRFAEQRTRLGTQLGTSINAGNLISIMLENESNWRACSDYAASTAAEVRRLERERATXG
>R1-8_DWi_gag#LINE/R1 565-2004  [Drosophila willistoni]
MNKSVVSIDHQARCAMADVQNTXWEESAFGSRPRLLRSPPLSTDTPVNVNXAKNPDARAIQVQALNNFDAPTVTSQIEEL
NELGNLIWQLDSMFNRADDGRKPVRHVNLSTKNSIVRMMELHETLCRKMTDSHPAKMVXKGVIATQTTPVMNNHLGLPIS
LSQPAKTATPKRQREDAATQRKTPPKRGKTTQRSRPEQLETNLANTXTSWANSVNAAEADAEWQTVSRKRPNKQPARRDK
PAAIVIQAQEGFSYAQILGMVTRRTDGKLDGVKNNVKRTRKTAKGELLLELKRDGDPDCQKLRNELSQVLGQQASVRAVG
TEAWIEIRKLDTLVSADHIIEALTKIIGDATANVRVRSLRHTFGDTQLAVLSMPRSTADSLLKTGSIAIGWTLCPIRERQ
SKQRCYKCLNFGHTAAKCSSSIDRTNWCLKCGATDHKAASCSNFPVCFNCVDAKRQQVGHYTGSRRCPMASAGANQQQNL
>R1-13_DWi_pol#LINE/R1 1930-4908  [Drosophila willistoni]
MMKILQLNLNHCGAAQDLLAQTIRELNVDVAVLSEPYKTQTGCFWAADRTSKAAIWACSNRAPAAEAVYSSDGYVCAKLG
DIWLYSCYLPPSLRLEEFESRLDNLAAHARGKRKVVIAGDFNAWSHEWGSSSTNARGRSLLEAFAILDLAILNTGTSYTF
TRADYGSVIDVTFASSQIASAIQWELSSHYTASDHMAIICNIGSRAQQTAVQEKRKMYRIDALNSEVFASSLAIPELTGD
ANKQAEMIMESVVAACDCSMPIRRAHSRHHPHVYWWTNNIAEARKKCLRARRAYQRARGSITYSHLGDEFASRRRELKRA
IKESKRRCFLQLCDEASSDIWGMAYKMTVKKLKAVRPAAPSEGHMVNIVQTLFPDTSYMAPREMLQMDHTDHISVSTDEL
LAAAAQMHDQKAPGPDAIPNKALKLAVRLQPEKFTQVYSKCFEECIFPDIWKEQDLVLIPKPNKPQDDPSAYRPLCMLDS
AAKLLEKLICTRLERAIAVAGNLSPMQFGFRKAKSTIHALATVVEIARKSIEGQRWKNGNKKYCLVTTLDVKNAFNTANW
SRIIEALSMFHVPVPLIALIKDYFRNRKLRYSTRSGDRIHEVRGGVPQGSVLGPILWNAMYDGILRISLPTDCHIIGFAD
DVALVVVAKQLSEAEEKTVTSIAIAKQWLANAGLELADQKTEAVLISSRKTVEQAKIVLDTCTIRSARAIRYLGVFLDTR
LCFREHLGHASARAAELGRSLSRIMLNTRGPGQSQRLLLMNVVRSTMLYGAPVWADAMETKSYRRGLEATYRLGALRVCR
GFRTISDDAALVISSMVPIDLLAKEAQNIFRSRQSAEWLPPARREATAEARRSSLAEWQSRWAASQKGRWTFKLIPDLHT
WVNRRHGEVTFELTQLLSGHGCFRSYLFRFGHESSAECTLCRQGIQESPEHVIFYCMRFTNERQRLTAVLGEEPTPFNLV
NIMITSQSAWSAVCTYAAATIRTLRELERERNT
>R1_SC_pol#LINE/R1 1-3015 Nearly complete fragment. [Bradysia coprophila]
LRGEVRGLPSSFRVVTSRIVNDGIGISAIVINDPEADVLVIEDCTDEYGVCVLIKGATCSMYVVSVYCRFGTALGPYLQY
MENVRVKCGNTYMIMGMDANAVSPLWFSKGENLGRGRLNEANGLLLEEWILEGRMIVINEPSEWYTFSGPNGSSDIDVTL
VNEAGGRFGYEWSVQPEWGVSDHNLIRIRVSLDGLVADASPSPQSARWQTRDTDWGEYMGDVKAKADVFGLAQYENVSVD
EKVDLLTEWIYGANDWNMRRHTAVRTFQNEWWSVELAEKRSELRRRRHAFQRIRNAGAASLADRLQAFRDCKIEYKRMLC
EAKLRCWQEFVASESNENPWGRVFKLCRGRRKPVDVCSVKVDGVYTDTWEGSVNAMMNVFFPASIDDASEIDRLKAIARP
LPPDLEMDEVSDSVRRCKVRKSPGPDGIVGEMVRAVWGAIPEYMFCLYKQCLLESYFPQKWKIASLVILLKLLDRIRSDP
GSYRPICLLDNLGKVLEGIMVKRLDQKLMDVEVSPYQFAFTYGKSTEDAWRCVQRHVECSEMKYVIGLNIDFQGAFDNLG
WLSMLLKLDEAQSNEFGLWMSYFGGRKVYYVGKTGIVRKDVTRGCPQGSKSGPAMWKLVMNELLLALVAAGFFIVAFADD
GTIVIGANSRSALEELGTRCLQLCHEWGKRVCVPVSAGKTTCILMKGHLSANRPPCIRLNGTSISYKSEVKHLGIFVAER
MNFRPHFVYLRGKILGLVGCLRRVMRKSWGLGRRATCILYKGLFVACMSYGASVWFRTLRFSYASILLNRCQRLVLYASL
NVCRTVSTERMQVLHGELPWDLEATRRGLLSEFRKGITPVDGDPITDEEMLGLSGSQFKELLMERLLDVWQGRWDVSEKG
RLTHEFIPSVRFVRENEWMAFGLCLGYVLTGHGSMNGFLHKRGLSNTPVCMCGAPNEDVKHLLGECPLYEDLRDLNGCGL
LIRNGSLDVSGALSEIGAFEKLNQFAVSLFGRRSRLMRGMRIRE
>R1_Ele9_gag#LINE/R1 694-2097  [Aedes aegypti]
MENINNIGEGAANPFARSGLVRSPTLQTQQAHQQHEGEQEQINVQQQQQFSMWSKVPKLPKVVTAKKFVEELHEYVDKRS
NVHKDIKLLVTKIQGALGAAVKEWKTLEARADTAEKELAVTKSALEAMRASASRKVETSTVTGEAPVSNKNVSSVQTTPF
FTPKRARASPEDVRPGGPKKHKDTPGTGVYPTTEEATEENSQTPWQVVGKKKEKTSKKNPSENRVSIKGRNKGEALILKA
SDDSYMEVLRAMRSNPDLKELGEDVQKVRRTLNGEMILELRKESKASSSFYKELAEKAMGDKVEVRAVCPEATLECKNMD
EISTEEDLRLAMQQQCALGNVPMSIRIRKGPRGMQVASVRLPVDAAKKALKTGKIKVGWSVCPISVSERYQLVACFKCLG
FGHIARFCNGPDRSKLCRRCGEEGHKAQDCQKSPKCLICANNGDNKHVTGGPRCPAFKQASANMSQWR
>Neptune1_Ac_gag#LINE/Penelope 1-741 [Anolis carolinensis]
MAEWQQGLSFDDKFKESLIKDRSLFESGESTSGNPNTATGIREYEKLKRREIRLDLHASTLAEYIRANRIPRGLRIFKPP
GMFHDDESFNQKWVAILNKCSQDLMLLLIARSNDEIANVRTQTQVILERLNSEDQFKTDLDTLTCKLKEFSQQLRSFKLK
KFERDENDYNNNRVYQWLYSKRQYSKKQVRFSEYTSEEDTESMSDSSGRSMASTRSDNIRVPRRTGRTRNRPNRFFQEAP
N
>Coprina_Pc1_pol#LINE/Penelope 345-4142 [Phanerochaete chrysosporium rp-78]
MPAQDTTRRAVRATASSSTGHFPSFTRALSPSQASVVLGEQISFGTFDERCAAALAHCTLLDEVIATLPKLYQVALSPVL
TDIHHDATKRVEIAAQLERLRQHKAAGTLPSPLKGLGSTPAIQFMKGFLESQKPDFPGKAPDIVKACAAKLLDGFIETKA
AEHAWYESRLQAMEVTRRVLTAADTHWKDELEQRYQVLEGFVRPPVEGQVPATVPSAEELHPLKFVTDPVMVAQHENIRR
SIPRLASTVIMLVVNRALTQQQRNKAKRDLKDQADVEMATDDTAVDSAVKRLEKQVEGLVSGMKALTNGKGKVSFSSSSR
THVEDAHPFVSGQSPSSRPFSLVDHRARHEAQGVQLGKRLRQRQDDGHQGPSRRLRCSSGEAGSPQEGQGEGTREGQEDP
EEIVAYVRAAPWRYDAPHSYPDVILMLPAPRAIQLLLERVPLEVKRAARFRSRVFLGPHVTVPEHLQMHVSSSLRYLMYS
VPSSNVVREAWEDFKDRFRWRVFFTEKLIDSPNDDDPDFDPDYVVPKARKRFDDGVRTTPAYIELGLRKGDKFVDDYISN
VMPSVKATSRSLNLVWLDELKDYLSANKYIVSPSDKNLGVCILQADWATDQTRTLWNDPSNYRKLGSLLEADEIMEEKHE
RIFRAARLARRLGKRQLAEFLVSKIHGKDAKTAGYTLGQFYGVPKVHKRPVKMRPIVPCHSVSQAPSATYVSKMLKPLVS
RQPHVIHGSKHLVRQLESLQLDKHRKAWIVSGDIVAFYPNIPLENCIRVVTQMWRNSPEAEKLSPEERQLFLMSFMTANK
RLVIQFGDEYAEQIRGLAMGIACSPDLANLYGSHYENPILARPDMKSKFAFFGRYLDDVLGIVYASSAEEAMSYANEIRY
DGVEIEWSVSEYHTPFLDLFLYLDPVEKRLHWKPYSKPLNHRERIPWASHHPKDVKKGTFIGEMSRLATLCSKLEHYRDA
ISDLSNLYLARGYPDDAVRSWVKAHFSQRWERRLGEPIVRDEVFVLKSHFNPAWSAFNVHGLSEVVVESWLSSLSKLDGA
NQSQDRTWHAAESTDGSELKIFRQTTLGQFQGEQSSLYPGESRPEGVAGRVGVANVAKPRVTYDPRDVMDVDELVALSEP
SFSAHDLSVVWTDNALRVPKSLRIRYAMAELRLDADPQVNPALHVPLGVEDQVGDLGPASDAESVASGDDGTTNSKPYRI
CTAKKDSGIVQEDLDIRSVGFHDRAWLVSRKKIRNLGDIVNSWKKDIIQAALNSDSVPHMHVDEWQ
>Neptune_Hyd_gag#LINE/Penelope 603-962 [Hydra magnipapillata]
MFKIMNGDCFYPMTNWPLDIQIIFWNYVTSDLETFKLTIFFLGNGCSPFVLFTFLILGFKRDPSKFNKRIYQIKWITKNL
ESHNSRWY
>Penelope-1_AMi_pol#LINE/Penelope 16-2418[Crocodylidae]
MKKKEAKLNSDIYFLSLCKKHNIVPRGLNIYNPLTTTHNSKYASQLCRRTSEKLRNHLLHITYSKRDQLKKEINTCYNNL
KEINPDIFPNIIQRIQKDYQRFFTTSIQHKKKKWNQLLQEQLSQPQNNHQRNNTNTVQHSNLILDETEGTNQPSNIINLS
THTLTKAEKSVLSKGLNFCPEKYPNKILQCGELEEFFRRLRLKEYFHNQNESTFNNTSSCDNIEEKINAKKSKKPSDWTP
HSGRNSNLDRYIDCFRERMNNEIINNKRHHNNLSLSERRAIESLRSNHQIVIKPADKGGAIVILNREDYIKEANRQLSDT
TYYEKLEEDPTPLFTSKLKTTITSFPSELQEKLQTLIPPLPNPGTFYMLPKIHKQGNPGRPIISNHGTLTEEISGFIESI
LKPLVTQRPSFVQDTTDFLRKLKNIDHLPSNTLLATMDVTSLYTNIPHQDGIQACLTYLQEQDYNSEYRPKDITELIHFI
LTHNNFSFNNQHFLQTMGTAMGTKMAPQYANLFMAHLEEEFLKNCTIKPMLYLRYIDDIFIIWTENLQSLIDFHHKFNNH
HPSIRLSLEYSSTNISFLDTMINIQNGKIQTTIYKKPTDQHTYLHRTSNHPKHTKKAVIYSQALRYHRICTEENTRDRHL
TNLKRAFTQQGHSSREIDRTFERATRIPREELLQYKKKIPTNRTPLVMTYHPSLEPTRKILKQLQPILEEDPILKEIFPE
PPILAFKQAPNLANLITRSKLPMAQXTPNGSRPCQDKKCKTCQHLHHSHNNYTPQQNHHHSWILHLHLQKCNISHPVHQM
P
>Penelope2_XT_pol#LINE/Penelope 134-2506  [Xenopus (silurana) tropicalis]
YFRFFRGIHKVPGTKKGHRNRRPRRGGHQTKTPQTTTQSDDQETVIFNLSKHSVSEQEMSVLSKGMSFVPTHHADPFEVT
QDIFKFTRTLKLKDHFKNSNSTPITLFKPKSNYIPPNTPASISTFSRLLMKDCKTLCNVPDKSRTTYSNLSKDEWGAIKT
LKADNDLIIRRADKGGAIVLLDRQYYRTELLHQLSDTTTYSNLMKDPTVKYSHELGSLLRLGLDSGWIDMPTYEYLLSPN
PRTPFIYTIPKIHKSLDKPPGRPIISATDSLCQPVAVYLDHFLQPLVKSMDSYIQDSTHLISMLRTLSIPEDCTLVSMDV
SSLYTIIPHNTGLEVIRTSLTNFGHSKPPIDFLCALLDFVLTHNYFLFENKFYLQTSGTAMGSNVAPSFANLFMHHYERT
HIYPKIGTSILFYKRYIDDCFLIWQGTDSDLSDFVSHLNDLPSPVRFTAEWSDSHIHFLDLEIFKIGDHLGTTLFRKPTD
RNTILHAQSHHPSSTARGVLFSQFLRVIRNNSDRNKAISQVDQMAERFLQRGYSQKLILEQKTKALKFTQDELLTPKTKN
SGKQPPLIFTNTFSAESKSLQQALLNRWDIVTSDASLPFSGIKKPLMGYRRAKNLGDMLMVKDLKPPKKTPTWLGSLQKP
GCFKCTGCQTCSGMVQGTTFRHPHTGQTFKIRHRLTCTSSYVVYLAWCPCGLAYVGKAATAYRDRMNNHRCAIRAGLSSG
SADQPVAKHFVTAKHSLPQFRHMLIDHVPTPRRGGNRDLELLKLESRWIFRLDTVNPRGLNEMLPLSIFV
>Coprina_Cc1_pol#LINE/Penelope 127-2549 [Coprinopsis cinerea okayama7#130]
TTPSLTAAPWQVEQTSEPPRKRRKTTEDVQRRPEQAEEGRQGKGKGQLAVGVLPSDFRYDNPSSYPDWLLTVPYPVAIST
ILLNTPARILEAAQFRNYVHLSPGVNVPLEYQYALSVGLRYMFPTPRNELLIRDAWKDFERRIRWRLFFTFSNEDNSLFD
PDYEVPKQKSSAPPRLPAYLEHGLQRGELFVNQTIAKIRRLPVEAPTYKSLKPNRDDLFEFLTSNNYVITGTDKNLGIAV
SERTWIDERCKEILDVRSDYREIHIIQLNQICNEQCRQMELIAQLATATHPNGKQLGEFFRSKITEKCSDTSGREYGDHT
VPIFYGIPKIHKVPTKMRPIIPCHSAIQNPAAKFVSKNLKFLIKESPTILHGSKDLAQKLSNVKLKPGRRWFFISGDVVA
YYPNIPREDCLREVFKMWSDARFGRTLDDNDEGTAEHYEFSLMYNALMTGNKKLVFRYGSKYYEQIRGLAMGVADSPDLA
NLWGVRSEISCGVLTNPLIEFYGRYIDDCLGVVYAHSEEEALSIAESIKIEGCTIEWTASEQYVHFLDMTVYRDSYSQLQ
WQPFRKAGNHQERIPWISAHPLDVKRGTFLGEMSRLATLSSQYDTYREALHGLAALYTKRGYPSELVSKWLKDNASDKWE
KRLSDRNHDSTGTDGVLVLKSTFNTAWNYFSARELGDTILGYWKTYAEKAKKDQLGGIHWQQFSDNVGDFTDVPDELMSL
FRTTKGLRYMPDVSKTNIWQRKVLVSRKRTRNLFDLTSLWKKQVLSKLEEDILMDVDSDSDQMSVDTPSDRSDGIDPNFF
INYTLGRT
>LOA_Ele4_pol#LINE/LOA 2563-6270 [Aedes aegypti]
NPTNKHLKKRRINCLQIKTNNLREMTKRSIKFIQENLHHAKAASAILSKTFIKGKLDVALLQEPWTKNHTILGLQTTGCK
LIYDNTQLAPRAAILLNCNVKFTPISEFIGRDIAAISLEVPTAKGKTIVYVASAYFPGDVDEVPPPEVAAFVSHCKKQNK
AFIIGCDANAHHTIWSSTGINSRGELLFDYVSQNDIDICNKGNSPTFSNAIREEVLDLTLCSSKLSDNINNWHVSDEISL
SDHKQILFEFCAKDILRETFRDPRKTNWELFCSRLKYQKESISDTINSSLELEKAADCLTSSIINAYNESCPAKERSTCK
DVPWWNYRLEKLRKNARKQFNRAKLTRNWSLYKEALTNYNKEIRRSKRKNWRYMCEGIESSHEAARLRKVLSKDHNNGLG
TLKKDDGSYTADTQESLELMVKTHFPGSIPITNRSRNQDISTSLNGSDRSNIEVADIFTYSKIEWALDSFESFKTPGLDG
IFPAHLQKCKETIIPILMTLFKSSFLLGYLPTKWRQVRVVFIPKSNKKDKTVPKSFRPISLTSIFLKIMEKLIDEYIKSN
ILKNKPLSRAQFAYQTGKSTLSALHSLVSKIEKTFDTKEILLAAFLDVEGAFDNASFTSMKNAMRNRDFPEKMIEWIEEM
LSRREISAYLGDSVVKVTAVQGCPQGGVLSPLLWSLIVDDLLVKLKLQGFEIIGFADDIIIIVRGKFDKTVSERMQTALN
LTLAWCNNEGLSINPDKTTIVPFTRRRKVCISALKIGDTKLSLSLSAKFVGVILDCKLVWNKHIEQQIEKARNAFWGCKR
TFGKKWGLKPKMICWIYSAIVKPIISYASIFWWEKTKQVATQAKLNKLQRLATISITGAIRNTPSNALNAMLNLLPLHDY
IQMDAVKSAIRVRRSLDSADSELKGHMTILKHFKISPVYLVNEDYMLKRNFFDHRFWVADVTRQDWDTGGPTFRSGSLIF
FTDGSKQDNMVGSGVFGPGVNVSYALGSWPTVFQAEIYAILECADICLKRRYRNANICICSDSKAALNALKSRTYTSRLV
WECSKLLQQLSYRNKVNLYWVPGHCGIEGNEKADQLAKQGSSMQFIGPQPFFGMASCALKMQLKSWMKAKIKLNWKNAMD
SRQSKRFIEPDAYQTLRLLNLNKHDLSTYTGLLTGHCPSKRYLKIIGKLPEDMCRFCKLESESTEHLLCKCVALYHKRCR
YLDKGLLEPNEIQYYHPKQVLHFIRNVVPDWDARQ
>Baggins-3_NVi#LINE/LOA 1579-4860 via tfasty with Baggins-2_NVi_pol, 2 frameshifts. [Nasonia vitripennis]
SQINLHHCKDASDILLRNMTVAHTCIALIQEPWVVKGAIRGLGNLVCFRNPKEQRPRACIVAKGINALPLLNLTTGDLMA
VQTELEDVERIVIASAYLPFDNTDNFPKAVQMPGVSNCSTTVGDTPTFRNAIREEVIDLTLSSTKIAHLISEWRVSDEPS
LSDHSLITYLVGNPSEEQPKWVRNPRKTNWEGYKKDVEEAMREIPLDIQDSTSRRDIYRKSAKEANRRNSWRNFCEKIQK
GKETARMYKILARNPEAVLGTLKLPNEHYATTKEETLNLLVQTHFPSFVGAGTGDLSGGGSGQGRRPTYAELSENRLLAG
RIVTPERVMWAIRSFEPFKSPGPDSIFPALLQKAEDVIIGPLTRMARTSITLGLVPTGWQGTKVVFIPKPGRNGYTSPKD
FRPISLTSFVLKTVERMVDRYIREKVLGDKGLHKEQHAYRAGRSTETALFRAVSTINKQLEAKGYAIGALLDIEGAFNHT
SREVIKRAMNRLVIPSTIAGWIDHMLGNRNLEASKGSTTLKGTVGSGCPQGGVLSPLIWCLVVDELLTELNNTGCTAIGY
ADDILIIARGPFLDLLMGVMQGTLTLVNKWCNKAGLSVNPPKMLVCTRRYKWKRECNLTLGGQKLPLKSQVKYLGVILDS
KLSWKKHLEYVIGKVTANLWQIRRVIGRNWGLSPEALRWMYEAVLKPRLTYGSAVWWTRTALSTSNILLEQLRSQIVRSI
SGAIRSTPTAALGMLLDVEPLRVTLAAAAAQALHRITNSLGEGNMQELPQLPKGLDEKGTLRMNPDAMNKAFLFDKKYRV
SIPSRGEWDDERINIPNDGDLWYTDGSKRKDAAGAGVYQRQSGKGTILPLGRHATVLQAELTAIMWAAQAALAESTRPRI
YICSDSKSALQALNNFTTKSRLVWDCFQTLNRLALKARVTLLWVPGHYGVKGNMIADDLAKLGAKSSLIGPEPAVGLCQS
LIKGEIRQWAENETNQIWSQIATCGKTKAFVTTGNAKNWSRVILGLKRAKTKLLVEILTGHGSLNAHRHAMGLSRDLFCR
FCCTEEDTPEHLLCNCPAIAEKRWRHLGAPLLETEEVQAKHAPGIFSFWETIGA
>LOA_Ele7_pol#LINE/LOA 1954-5749 via tfasty with Baggins1_pol, 1 frameshift. [Aedes aegypti]
MKMANINVNKSCNIQSSNQNNHSSITNTNTNNINRQNRFIKFIQINLHHAKGATAVLQKKFVHNKMDIALIQEPWAYDRK
VLGIPTSAGQLIYDENQIVPRAAILISNRMKFLPITQFISKDIAVVLMEVPTTRGIAEMYVASAYFPGDLEAIPPPDVVN
FVSYCKKNNKPFILGCDANAHHIVWSSSDINYRGEYLLEYIITNNIDICNQGCEPTFITSTRKEVLDLTLCSTNISENVK
NWHVSNETSLSDHRHILFQYQTNEIFTNEFRNPRKTNWDLYYQNILNESHISDEKFNSITELEKASVQVSNLMQHAFQAS
CPITVRSTSRDVTWWNDNLEALRKKTRKLFNRAKRTMKWENYKIALTDYNKEIRRSKRMDWRRTCESIENTPVVARLQKV
LSKDHVNGLGTVRKSNDCLTSNGLETLEVMMQTHFPCSTVINYDENATEDNTSNELSRMTSLGEIHDSKDNLDLLPILNM
AAQKADEIFTKNKVEWAINSFDPFKSPGKDGIYPAFLQKSNGVLTSALSNMFKASLVFGYIPKSWRQVRVVFIPKANKKD
KTSPKSFRPISLSSIMLKIMEKLIDHYIKTAYLKQNPISIHQFAYQSGKSTTTALHALVSKIEKTFEAKEVLLATFLDIE
GAFDNASHKSMARAMLKHGFDICIVKWISEMLSKREITADLGSVSISVKAVKGCPQGGVLSPLLWSLVVDELLTNLESQG
FEIIGFADDIVIIVRGKYDSVITNRMQRALDYTIQWCITEGLDINPQKTHIIPFTKRRKLIISGLHMKGTLMTLSTEVKY
LGIILDCKLNWNSHLKQIIDKATNALWLSKRTFGNKWGLRPIMIHWIYTTIIRPRITYASLVWWTKTKEKCAIQKLAKLQ
RLATMCTTGAMRSAPTKALDAILNLLPLHQFIQLEAEKSALRFQQWKPLLSGDIKGHLSILNDIKINPLVTVNTDWMEIQ
FNFNRMFNVVESDRTVWTMGGPQIRSGSIIFYTDGSKQNGQVGAGVTGPGVNLSVSMGRWPTVFQAEIQAILECASICLK
RKYKHSNICIFSDSQAALSALKSYTCTSKLVWECFLLLQQLCINNTVNLYWVPGHCGIDGNEKADELARIGSTEKFLGPE
PFCGVSTCSIKMELRNWKQSMVITNWNKTAVARQSKQFITPHASNTQKLLFLSKKDLCTYTGLITGHCSAKYHLRLMGKV
EDDICRFCQESCETSEHLLCSCDALFQRRVKFFDKGDIQPFEIWSLPPGKVVRFIRHIIPNWDNT
>Bridge1_FR_pol#LINE/Penelope 2455-4206 [Takifugu]
NRKGYVSPLDGVFKLHHPLSLEQRGIDGPQSSHSQEVVVLAKNFKLFRPQQDLLSKGLSFIPSWNVGRDQKVQLQLDIQN
YHRKIKLATYYRDSTKKLYSKFIGTSDWTPPLGELPPVIGELIRKDLETFKNHFISVKENLNISLPEIKALQELQHKKNI
VIKPADKGSAIVILDREQYIFEVERQLNDTEYYKKLEKPIYLDTIPMVATILDTLKRKKFICEKQRKYLVGDVEPRERRF
YILPKIHKEPEKWTIPYELPPGRPIVSDCGSETYFTAEFLDFYLNPLSTKHPAFVRDTYHFIEIIKTLKIPADSYFFSMD
VDSLYTNIPIESGINCIRNIFEKYPDPKRPDEELLQLLEINLSRNDFIFNGKYYLQTKGTAMGKRFAPAYANIFMANWEE
EALLKCKHKPAHYLRYLDDVWGIWTGSELQFREFVETLNSHDPSIKLKTEINKHSINFLDTTVFKGPDFLKTAKLDIKVY
FKSTDTHALLHKTSFHPKHTFKGIVKSQIIRFKRICTRDEEFKEAVNVLFKALRKRGYSKPFLKHCFKSVQKRKNGGDRG
DLIPLITTYSSVNKSLNIGLKTI
>LOA_pol#LINE/LOA 4117-7716 In frame with gag2. [Drosophila silvestris]
MTKGINTGLAQVNIHRAKAASAVLARMFTNKHLGLALVQEPWVNNGIKGLFTADSKVIWDRRDPAPRACIMVRKSINFNI
LSEFLTRDCVPILVYTKGSAVSMVIVSAYFAGDAPCPPPEVERLVEYCRKEKMPVLIGCDASAHHTIWGSSDIHLRGECL
TDFIFKYNLELENVGSAPSFVTRIREEVLDITLISRSLKPHLREWHVSQEESMSDHRTILFNLKLNTDSSTPGRNPRRTN
WEGYKSTLGLNLANGLSGTPRNPIELDRATDDLNKCIISAFEENCPVGKRFMEKDAPWWNDSLERLRVTTRRLFNKAKRD
GIWEQYRECLTSYNKEIRKAKRKNYRDFCESIVSTSEGARLHRALAKRTPDANLALKRGDNSFTISNKQRLELLFETHFP
GCTPLQEEAIVGISRYRPSTDDWACAKSTVTKEKLNWAIGTFQPYKSPGMDGISPAFLQTGQDILLSRIRKALVSSLALG
HIPSACRRARVVFIPKAGKKDITDPKSFRPISLTSFLLKTLEKMVDYKIRSTLLKQRPLHPAQHAYRVGRSTDTALYQLQ
RTLSAAIDYKEVALCAFLDIEGAFDNTSHDAIKDTLSRRGLDPTTSRWILALLRSRQVTASVHDSTVTVLTTKGCPQGGV
LSPLLWSLLVDELLNRLTNSGIQCQGYADDIVIMARGKFEESLCDMVQSGLRITYDWCKEVGLNLNPTKTVIVPFTRRHK
LQRMRQIWLSGTPLERSREVKYLGVIFDSKLNFGTHVQNAMLKCSRALYTCRSIAGKSWGTSPKIVRWLYLMVVRPMLTY
GVIAWGDRARLITVKKQLQKLQRMACVCMTGVMCTCPTMALEALMELTPLHHIIRLKQKATLLRMSAEGVGCPTLSNELP
LLLQPRDEMKVEYIFERNFTVYMSSKRNWTTLEEVHPMKPHTIRWYTADHSPTRAQVSVWWALGCHTTNPYGTHTSIFQA
EVCALGKCAILTLKRNYRNTDTSILSDSQAALNAITGTKITSKIVQEARSKLNLLGTHNRLACDGSRATGIYRVTRRLIS
RREWGQKGPLIGPEPYCGIGRHTIRLVLRNEEKQVRQQSWSEAVGLRQARCLLGGYNLKRFKQVITMGKNNLRILTGLMT
GHCRLRSHLTRLGIYSSDLCRFCEIEEESSVHILAECVALARRRCSILGMHVLNFRDIEDLNPTKILTFVREVGLMEEL
>Penelope-2_CQ_pol#LINE/Penelope 503-1795 Fragment (TIR to pos 502) [Culex quinquefasciatus]
LDMFCEIVEFCVNRSYFSFNGEYYIQKFGTAMGNPLSSPIADLVTEELIDHALEAVNFPIPHIKKYVDDMFLSLPADKID
YVKEVFNSQDNNIQFTVEVEQNRRLPFLDMTLVRQEDQTVRTEWYMKPIASGRFLNYHSHHPPHHKLNVAFNFAKRVKML
STNLDHNTAANIIRKHLLINDYPKSLINRVISRTPQNQLFEEVNNNTVIDNSENDTAMDASTNNTPIFYSLTNIYGLTQK
ITKTLHKEYPNIQIAIKNTKTVASLLPLVKDKTPIQEQSNVVYAIPCNDCDACYIGITTTKLKTRMSGHKSNVKQLQELK
AKGYTNTDAEISWAKEKSALTSHVAAMDHSFGIDSVRIVDRSMKGANLPILESCHIKNTQHTVNKRTDTDNLHAAYAGIL
NEIKNIYTRKKNQNKINKNNNSRDNTHTNT
>DMRT1B_pol#LINE/R1 1859-4843 [Drosophila fruit fly genus]
KKPRATLMHTHISVVQLNVNHCAAAQSLLAQTAVERNVDIMLLSEPYVSGSGQSSMILDETGKAAIKCCSSLHVEELAAL
PMRGIAYAKLKHVHLYSCYAPPSDTPDQFEEFLEALVDHARGRSPKVIAGDFNAWAVEWGSRTSNTRGRAVIDAMGMLDL
ILLNDGRKPTFNNDRGTSFIDVTFVSRGLVDNNNWMVHDVMTLSDHALISFSLSPEGMPRRRQSRAVGKAWDTRKIDEAM
LAYQINSLEIPSGDAESMAAGLMNMLGRICDAIMPRKNKAQRKPPVYWWSASLSQLRSDCLRARRMAQRARGSTHHAELL
EAFRRKRLEFKHGIAAAKARSFKELQDGVDSDTWGLAYKLVTKKLRRRAATPSDPGVLANIVGELFPKQTTLWRPTEAAP
APDFPCVTELEVAEAAKRIKPNKAPGLDGIPGAVIKAVALGRPEIFRATFQQCLLDGIFPTRWKSQKLVLLPKGKGPAHA
ANSYRPLCLLDIVGKLFERILYTRIEAITESINGLGSHQYGFRKGKSTLDALSAVCNIAKTAISGDRWLGGRKEYCAIVT
LDVRNAFNTARWPVILAAMYRMGIPEYLRIVVGSYFRDRVLWYDTEDGPKRYRVSAGVPQGSVLGPILWNIMYDGILGIN
RPVGVELHCFADDVAITAVSKTIAGLEDKCNSTIGAAIRWLEKAGLAIAAHKTEAVLLSSRKKVENMLVSVKGTQVTSQE
SLKYLGVMIDRRLSFKDHASHASKKAAITASSLARLMPNVGGPRHPARKLLVSVAKASLLYAAPVWSNATGRVSYLKGAR
SVLRSMSLRLIRGFRTISEDAALALAGLPPIDLEIKALSLMRSGASRQEAHEWLLGEWQSRWQTSRRGRWTYQLIPEMTV
WAECQHKCLDYHLTQFLTDHGCFRAYLLRFRHVESAQCLFCVDGEETAEHVLMHCSRFTAEREQLKTLSGSPFSPSGLFA
AMLANRGAWERGHSIIINMMKRVRSDEMANRVDV
>Poseidon-3_HM_pol#LINE/Penelope 3-2466 via tfasty with Poseidon_Hyd, 2 frameshifts.  [Hydra magnipapillata]
KDYITTFYGxKIYDDTKKLQDLKIRNANSKNQLVFLQKCLSNNITPKSFKIKTPVHTKKAKNIMKEYSKKLLIHARNEAK
HRLYSSKKLINELNIFLQTKVRLHDYELINSITNKSKNYHYIKKKTEMKEKYHKLQITSIIKNTFRINPPNQVIKPAILN
LTNVILDKSTTELLNLGPNFVPLQKKIPYMDIITNIETCALQLEKLKKPTQAETLRQNCSQILTNSLKLRLKDNLTKQQR
LSINKLKNNSNVKIYPFDKGTGFALLNQKDASLKLEEQIKNSKIIDYDPTSTLTTKFQRQLCKLRKEGKLDTNTYFKMYP
SDCNPPRIYGMIKAHKPEKDYPMRPVVSTINTPPYGTSDYLVKIIQPTLNKNKSRLMNSNSFVNEAKQWIIDPNEVQVSF
DIVNLYPSIPIDEAIPVIIDILNADIDDLKTRTKLTLADIHQLIELSLSICYFLYENNIRIIPNSGPIGLSLMVVMAEAF
LQNIERKALNIAIIRTSEPKTYERYVDDCHARFASIKQQQMFLNILNEQNPAIKYTVELENDLKQLNFLDINITNTGSGT
YEFQIHRKEAITNVQLKPNSNINPNIIIGVFKGFLCRAKRICSQKHLQKEIDFLIDIFVENGHNKNILNNITIDYLKNGS
KNTTFQPIDTQPFIKLPWIPIVGPKLRKEFRKQNIKVIFTSTPNLKNILCNNKTKLPPNTNPGVYQLKCSCNSIYIGETK
KKVISRCIEHQKNSLKGKWSSSGATEHSETCHGKFDWSHPKTLSVAPEYQIRKIRESLEINKAKVRQEFGSDEKVLNNRD
DGDYVTTKTWGPFFIXIXDVNI
>HidaAg1_pol#LINE/R1 gi|28569885|dbj|BAC57920.1| reverse transcriptase [Anopheles genus]
MMITLQINISNCSTSQNLMLQAAKEQHADVILVSELYRHPPNNGNWAVDSSGRVAVVAAGSRPIQRMWGSAVPGLVAADI
GGITFISCYASPRMTVAEFEEFLNAVEIEVSAHPNVVLGGDFNAWHEAWGSARTKRKGEELLNTVEQLGLIVLNRGNTST
FTGRGIAGESVIDVTFASPSIVRYNTWEVLKSYWYSDHRYVRFSVDSSSVLGNGIQLHRHQHQLQPQQRRFHRQSPAHRR
KPRWRRAGRRWKVGQFLPESFCFALEAVHFAEIARTPETLQVALSRACDVAMERVSSSTPYYQTKPQVYWWTPERAQLRE
LCKEASDNAHSRVDPDERAAASEIHQERRSELKRAITTGKGQLFQQQIDEVNANVYGSGYQVVTSHLRGSRTPPELDREV
LERIVTDLFPDHNSFDWPMPTETSSEPYHIRPVTDLELERIADDMCSRKAPGLDGIPNIALKTAIKKHTAVFRSIYQGCF
DRGEFPAHWKIQRLVLLQKPGKPPGESSSFRPLGMLNGLGKVLERLILNRLNEFLENGETSHLSPNQYGFRRGKSTVQGI
LRVVQAGRTAKSFNRTNGRDMRCLMVVSLDVRNAFNTASWKSIAMALRSKEVPASLQKLLQHWMTDRQLVFDTDDGPVTR
NLSTGVPQGSILGPTLWNVMYDSVLDVQLPEGAEIIAFADDLLLLDPGITPEAASQRAEEAVSAVNLWMENHCLELAPAK
TELVTISSKRQGNINVPVVINGVERRTTRSIRYLGVVIDNQLSWKSHVEYCTTKALRTAKALGCLMRNHSGPKCAKRRLL
ASVVDSILRYAAPVWHEATKNQECRRMLQRVQKHCAIKVSSAFPTVRYQTAVVLASMIPICLLVQEDARCYQRQQEAGGA
LSAGILRAEERINTMQSWQEEWDADASQADASRFVRWTHRVIPDIAAWHFRRHGEVNFHLSQVLSGHGFFRDDLCRMGFT
PSPDCIRCTGVPETAEHAMFECPRFAEIRQKLLGEANTDAITPETLQFHLLQSQEKWSRIAEAAKQITSALQRDWNEERA
RLAVSSTLSPSHPVGPSDRNQVIAARRERRNARRRERRAREREAQQQNPSLVFSASSEATEGRESAHPERREQVRPQRRI
RQHMPQQKEVVELSDVTQYATAISEDVYSSNPIQGGLTAAESAVATETEISSR
>R1-1_BM_pol#LINE/R1 39-2918 [Bombyx mori]
MTGVLRFLQGNLNHCARAQDLLFQSMAEGLTHLAVVAEPYRVPSSPDWAADLEGRVAIIRRCCVGAPPRFXVVERGRGFV
AVLWAEVFVLGVYFSPNRTLAEXXVFXSELSRVVGRSHSRRXLVLGDLNAKSLXWGSSRTCPRGRAVEERLVGSGLLVLN
RGAELACVRRLGGSVVDVTFATPDVANRVRGWAVMVGEETLSDHRYIRFGVAAPPAESIRGSSLLCGGGAGGPRWAQKRL
NVERLCEAAVVQAWRLDSLGEPADVCEGVEHLREAMSRVCDAAMPRIRALAPKRRVHWWTEEIASQRRLCDVSRRAYQRY
RRRRTRRDPDEEDRLYEVYRTAIRALRLAIGEAKEAAWNDLLASLDRDPWGRPYRLARNALRRWAPPATSTLPPETLQRV
VGGLFPDFTGTAFVPPVMTTARVADGGEPEDVSQAEFDSAVQRMRAKRTAPGPDGISSRAWALALTGDGLGPALRGLFSX
CLREGRFPEPWKTGRLVLIPKEGRPRDEPSGYRPIVVLDEAGKLLERVVASRLVQHLESVGPDLAPNQYGFRRGRSTVDA
VLRVRHLSDRACSEGGVLLAVSIDIANAFNTIPWSTIVESLRFHRVPPSLRTLIEDYLSGRNVVFPERRGWGRKAVSCGV
PQGSVLGPLLWDIGFDWVLRGASLRGVDVVCYADDTLVTARGADYRAAAILATAAVSTVVSRIRRLGLEVALRKSEAVCF
HPVRRGPPPGANLIVGGVSIAVQPKLKYLGLVLDSRWRFDHHFGELVPKLLGMAGALARLLPNVGGCSAGVRRLYLGVVR
SMALYGAPVWSPALSARNAALLLRAQRALAVRVIRGYRTISREVACALAGSLPWDLEAEVAAAVYRRRTQSLSRGRTPGP
SAVGRWRRAARHLAYESVVVLRGKCFARLFQGVVSREKLGEVKDLGSSLLPFFLSGGAGVRHXPVRYPPRPGIRKWIPQR
>R1-1_AP_pol#LINE/R1 2170-5184 [Acyrthosiphon pisum]
MSFPPLKIVQLNMGRAAAVSDQLLSYCQDTGVDIALVQEPYTNRGRLTGFEVAPIRCYLSMGTRRRGGPRHIDHGAAIIV
LNPNLVVASRDSGRVKNFVSIDLDCGAEGQWTMISGYFKYRVPTEIHVSALESLTEQNGNSLLIGLDANAFSTRWFSRIN
DRRGEVLSQFIDAQRLQVENKRSVHTTFRGPRGKTNIDVTLSSGQISTRVRDWTVLPGITSSDHQLIRYEVDAQPRRFVQ
PPPRYNVNRALVEQFKMEFHLRSEGRQCHQDIDSMATAIVEDITAAADLYIPKSSHRRKVKPPWWTDELLAARRNLRRAA
RRVDDTVTRAEYNVLRNSYTSLLRKCKIGSWRRFCTTEGKLPWGKLYRWMRQGVKPQSVPVLMMRPDGTQCQTLDESLTS
LLNTLIPNDPDQEDPAPVESNEENWTETTEVELRTFAWSVAPNRAPGADCISGKMVRLLWQNLHPRLRSLANSCMRRAKF
PKDWKAAVVVPILKGVGRDIRNPKSYRPVSLLPVLGKIVEKIINVSLRTQIEPRLTGKQYGFTPGRSTLDAIRNLLTWSR
LNEEKYVLTVFLDITGAFDNLKWSALLEDLATLGVSEHTRSLIMDYLSGRTATLKIGGVSKTVRVTKGCPQGSILGPILW
NVTMEALLRAEQPQYVNMQAYADDVAISVAGPTRASIIRRTEQALQPVLQWARSRGLSFSAQKSTAMITKGSLVHGFTLA
FGDERIVTVPHTKYLGVTIDSDWKWDVHIERLTEDHDDIFSRLRGTMGAGWGIKRENLMTLYRGVFLPRVAYGVSLWVHA
VGSEGNKKRLHRLQRRVLLGLTCAYRTTSTDALQVLAGVLPLDLELKWIAIKEDAKGLPEGVRRGTIHLAYEDIMDEWQS
RWSNSHKGRWTHQCFPDVRARQTSPLAMGHEVAQFLTGHGNFRAKLAYFGRQPSPVCLCGAEDEFVDHVIFRCERHSAHR
AHLELEVHRAGHLWPCEMETLVSSKRLYTALVRFAKTAAYYEQLD
>Penelope-10_XT_pol#LINE/Penelope 1058-3520 [Xenopus (Silurana) tropicalis]
VINLSSRSLSLDESNLLSKGLNFIPDEKLDIFSIILDLNKFIRLLTVKRHFANQDNMKVSGVHNNVDMADSLSQESLGVG
QSLIDVSEGTGMQVALDDFRDFCALSDLQDLEAEGSISSGEYPHKLVTVSGMKKNSEFYPIQAKSQQLIMFHKLVQNDIE
ALGSNLGKNKSKYGNLTPGEYKALHALSRDDTIIIKKADKGGSVVVLDTPAYVAEVMRQLTDVETYTLLKRDPTEGFKSV
LADLLSEGFSNGVLTTKEVEMLKCENPVIPVFHVLPKVHKSLDNVKGRPIVASIGSLSENLSCYIDRLLRPLVESLPSYI
RDTTMCINQIQDLKWKPSYRWFTMDVVSLYSSIDHSLGLQAIGYWLDKERIFPKAQSDFILQAVDFLLKSNYFLFDGKFY
LQRCGAAMGASFAPTYANLFMGWFERLYIFGDQNPFRSRIFSFFRYIDDCIGVWDGDDDTFSHFVAYCNERVSGISFTYE
TNKVCISFLDVNFSIQDGLIHCDLFRKPITRNTLLHSKSAHPASCLGGIPVGQFLRLRRICSTWDAFQRQAMALWDRFLE
RGYTPGVIKAAYERAVSSDRSTLLRPKRSDTQNVNGKEKSKTRFSMVYSKNAHLIRKSICKYWGILLQDPILAKILDKEP
SFVYRKGRDMTSWLSPSLYTSKKRTIPWLNYTGNYRCGRKRCKACHFLNVSKKFISTHTGAEFQIKQYFNCLSKEVVYLI
TCSCGSQYVGKTVRNVSIRILEHVSAVERGDLRSAVSKHTIEKHAGKVSFTFQIIDKVSLQARKGDLEKRLLKREAFWIY
NLHSLEYQGGMNREWELSCFY
>Penelope-3_Crp_pol#LINE/Penelope 3-1065 via tfasty with Penelope-1_Crp_1p, 1 frameshift. [Crocodylidae]
NTDNIFIIWTEQLLTDFHHRFNNYHPLIKLSLEYSYTNINFLDTTIHIRGTLQTTIYKKPTDHHTYVHKTSNHPKHTKKA
VIYSQALRYHRICSEENTHDTHLASLKSAFIQQGRSSREIDITAKSRSNLLQYKKKPPRDCTPLVVTYHPTLEPIKIIIK
QLQPILDKDQTLREIFPAPPLLAFKQPPNLAQLIIRSKLPTVQQTSNGTQPCLNNRCKTCQHISTATTINTSHNEPIRIH
GSYTCLSQNVIYLIQCTKCPHGNYVGETRQKLRTRMNSHRKNIKDRDTQTPVGAHFSQNNHSLSDLTILMLKGNLQNTFK
RQAWEQKFISWLDTKNQGLNTDTDFMAYYNLPDS
>Penelope-2B_Crp_pol#LINE/Penelope 1-2054 via tfasty with Penelope_Pci, 1 frameshift. [Crocodylidae]
HPRLREYFRDExTMQWSTHHRPDLYTAQKKDSSWTPPEGCSPTLDLYINCFCLRAHSEIAKKQQHLHYNLSPVEQRAILS
LKNNPDIIIQQADKGGATVVMDKTAYIQEAERQLSNTEFYKLLTEDPTAQYQEELDKLLKDLPLETQERITASTSQEPRP
GNFYLLPKIHKPGNPGCPIVSGIGTIMEGVSGYVDSILFPYATGAASYLKDTTDFLKKLGSIDKLPANTILATMDVISLY
TNIPHEDGLQAIKNIIPNEKTASVSITLSCFVLTHNYFRFGDSLYLQTNGTAMGTCMAPPYANIFMTDLEVRFLRSCPLI
PLVYLRYIDDIFIVWTHGKESLEKFHQDFNNFHPSIKLTLEYSTQQIHFLDTTVKVCSGHIATTLYRKPTDCHSYLHATS
FHPKHTTRSIVYSQALRYNRICSDPTNWDEHLKDLEQGFLQLQYNPKTVATQINKARLRPCSDLLQYQPRDKDNRIPLVV
TYSPQLEHLRHIINDLQPLLEKDDHLKVAMGDKPVLAYRQPPNLKWHLSSNRLPNSHPHRGTRPCNGPKCLLCPHINTDH
IITGPNNKEYNIRGSFTCNSTNVIYAITCLQCPSAVYIGQTGRSLRVRMNEHRSDISCRKTQKPVAEHFNLPGHSIADLR
VAVLRQQNFKNQFEREIAEQEIIHRLDCVKYGLNRDYGFLSHYLD
>Penelope-4_HM_pol#LINE/Penelope 1-2135 via tfasty with Penelope-1_NV_pol, 1 frameshift.  [Hydra magnipapillata]
SNSSKMEKLNFQYSIKNISIPSRKNYILQLMAKTETLIKRMRWKALFFINKQTDEKNSEDYVNYGINSSKCPPQIKEMCS
FENNLINLVKTIKFRKINNVFQKKLANDIKSIRTSKKTLTLADKTSNMYKLSKDQYNHLLNNAITSTYKKADPKLKDQIN
IQGKQILINHDVYNKIGINGTENCFITLKDHKENFLDKPTVRLINPAKNEIGRISKSILSNINSELRKKQFLNQWQNTQN
VIHWFQTIKEKQFCKFLVFDINDFYPSINENLLKNALSFAEQHLIINSEQKSFIYHARKSLLFSNGTAWIKKKGGLFDVT
MGAFDGAEICELVGIFILHQISQFYDKNNFGIYRDDGLAIFRNKSGQEMEKIKKHFVQIFKNNNLLISIKSNLKIVNYLD
LTLNLKDGSFKPYRKADNILNYIHTSSNHPPSIIKSVPKTIELRLSAASSSESIFKESIPPYQEALKKSGHTCELAYHPS
IKSSNNNHKRKIIWYNPPFSTNVVTKIGKCFLNLIDHHFPVNHRLRKIFNRNTIKISYSCMPNIKSIINSHNKNTLHEEA
KVNEKTCNCIDKSKCPMNNHCLSNNIVYQATVCSNNPEYKEKVYFGLSETSFKVRYANHLKSFNSIRYKNDTELSKEIWK
LKEKNFTPFVRWKIVKHCKPYNPTSRVCNLCLNEKFQILMYKGKNLLNTRSEIISKCRHKNKFLISSYDTAD
>Penelope-7_HM_pol#LINE/Penelope 816-3117 via tfasty with Penelope1_XT, 1 frameshift.  [Hydra magnipapillata]
KKLVKPNPKKIQPKVINLSTKHLTTSQISLLTKGPKFCPTTKGNILHIDSDIKQFTRKLILKEKFHGTENTDISIIKKKS
NYNIKTTLPYLDEIISKIEQIKPIKMQSVDNITQQERIALKDLKEMKNIVIKKADKGNTFIVMDSTYYNEKLVHQDHLLS
ANTYERTKPESDKIVFRDLIKMIGKYNFLTKNEINYITNFKWKSSSFYITPKIHKCQEIIDKVNASNSLYIEMKPPNDLK
GRPIIAGINSPTSHLSQFLHIILSPIVTKQKTFIKDDWDFLRKIPRALNSDSCILTCDIVNLYTSIPHNLGIEALKYWIE
KHKSLIDKRFTPEFIIESTYFILKNNNFLFNDQMFRQIIGTAMGTNFAPDYACLTIGYLEETRLFPKILPKYFSSKDVND
IQEFYYRYIDDGFLIWPKHLDIVKFKNSLTEIDNSISFTTDMGKEFIIDGNTYNIINFLDISIILENNRKIKTDIYYKET
NTHDYLNYNSHHPYHIKKNIPYGLAKRIIVFTSDYNKEKQRLAELKTWLKECEYPNNIIEKAFHNAKLQGPAPQNQSKEI
FPLVTTFYSNLNCQPFITETNLLLNLSSNERVKEVFSNVQPVIAYKQPPNLLRTLTSSKIQSTTKEVGLFKCNDNRCKIC
KFYLQEVNQFTTSNGTIWNIKSHITCNSKNVIYYLKCLSCNKKATYTGKTNNLRLRTNGHISSCRTGQSTDRFDNHVYNC
QRAHNSVIEPFFQLFVFVELKNEKNLISYEKHFHNQKHDTFNCVYITI
>Penelope-6_NV_pol#LINE/Penelope 3-959 [Nematostella vectensis]
ISETSVTFLDISLSIKDDHLATSVYYKPTDSHSYLLFSSSHPKHVKTAIPYSLFLRLRRLCSDDSDFHSQSEKMCQFFSD
RGYPAHVVTNALDRARSVDRSVALQPSKPKSEDRIPFPLTFHPSNLAIKHLVSRNFKILQEDPETAAIFPQPPLFSFRRD
KNLRSSLVRSTLTPDNLEPGTFKCSRKRCTTCDYIVPTTRIIGPNGESYSVTDHITCTTSNLIYCISCKLCGMIYIGETG
RMLGTRFCEHRNDVINRRTFKPVSRHFNLPGHSVHHLSICGVSLHNGSNDSRIQKENRIIFSLGCRAPLGINEKLSFA
>Perere-6_pol#LINE/CR1 1799-4144 [Schistosoma mansoni]
MTTKCSINSFDSRLLETVMEHALVQHVSKPTRFGVNQGSSLLDLVITHETEDIANLNILPPLVNSDHAVLSFTFRASDMI
YDQIKPRPNIWRANIPEIQDCATKIDWSVDTSSSVDEAWSVFKGKFRSVTSRFIPYLVPRRPNNSPPWINKEVKNLLRCR
KKHWNMFISTGLEQYRSSYRKIRNNYKALISRTRRSYEKQLVRDCKHSPKRLFSYIKRRTQRSDGIPSLLIQENPLSLAR
NDTEKAEAFSEYFSKVFSSNNEERSPIHGDCGDLLMDPVVIKKETVLSLLQHLKPDKSSGPDDIHPRIMKALSDVIAEPL
PMLFDMSLRQSRLPRDWKDAIISPVYKTGGRDLVSNYRPVSLTSAVVKLMEKIIRMAVINYVERHDLLSKEQHGFRKGLS
CLTNLLIAREDWAEAKDRNIPVDVIFIDLSKAFDKVSHSGLKLKLESFGIHYAVIDWISDFLHERRQRVRVNGALSSWEP
VKSGVPQGTILGPLLFLLYINELPAIAKSSVLLFADDIKIWRPIYSMSDRIVLQEDLNSLVAWMNGWSLEVNPNKSVVMQ
LNNYDDSYHYTLCGLVLPKVRNYKDLGVILSNDLKTTSHCKAAAAKGYRALWSIRRSFRYLDGEMFRLLYPTFVRPHLEY
GIQAASPCFKYEADMLERVQRRGTKMVKGLSSLSYEDRLRHLNLFPLSYRRIRGDLILAYRILNDDLGTNMSYLFLPSRA
EHLRGHSKKVQKPRSNRLRLEFRFSHRVVNYWNSLPEHVISAPSVDIFKTRLDLHSVTNCKD
>Polinton-1_TC_pro#DNA/Maverick 6102-6551 [Tribolium castaneum]
MNTLQLKRCLEMISRKKKHHVLVSAYNTLPVLITRPSMVIINRDPDYMPGSHWMAVYIDKFGFAYFFDSFGNQPPRNIQK
FLKRNALIWSYNSSQIQDISSTVCGKYCTLFLLNYVLGNSVDDFLKLFNNNFYNNDKLCNKMFTEYFMNK
>Polinton-1_NV_pro#DNA/Maverick 8581-9885 [Nematostella vectensis]
MSYVKYNVRLTPGQKEKLLKSYEKKAPITLRLKHSQLSGSDTVLLTKSQINRVEKSKRNRTGTDIKISQTQIRNQEGGFL
GALLPALARLGSAALPYLSKAVAPLATGALSGLASWGVNKALPKTGSGLFSVPQDKVDKLIKYKGYLTQKQKEQIVQALQ
TGSGIPQFKLTRKQQEGGFLGALLASIGVPLLMSALSGKGLQVDNRPQNYLQTYRIPPPPKPKGGRLSQRPPPFYGQWDD
PTIGYGAKPKRRQKKKKKGKRAPARQKQPVQRYPTTRSAAIRFVNKPLSNIDLLKWVTKLGIEHFRGVYSRDDLPKRIHK
KECGIVNLDDSRGAGTHWVCYRNIDDTYCEYFDSFGIGVPHEVERYLATSGKALAYSGDEIQERLSVLCGYWCLYYLLER
QKGVSMFDAIHNDSISLNDQGGNHRFLISYFSIL
>Polinton-1_TV_ptv3#DNA/Maverick 14713-14006 [Trichomonas vaginalis]
MSIINIISNNNCELNLTVSGIYNVTLVSVSGKFNPILLDPSDYISFIKDDHEKTYDMYINNVIAKWDINMILSYLNESFI
VWYEENFKSKPDKLFELDEINNLIKFPLKIKFCTPHLRSLLGILNFEKDVGDVLYSDTGSNFILIKCDKVNTPMRFSHQT
LDPNSYPSIQNILSINLNTFSLSYPFQLSGNSFILHSKDLSNIKFRITDLFDCDLEFMNEILWQFQIEKIADEITD
>Polinton-2_CI_int#DNA/Maverick 8556-9623 [Ciona intestinalis]
MDSILDTHTLNELYYNPKEIGSFGGIEGLQRSSKLKRSKVKGWLSHQDTYTLHKPTRRKFPRRRVIVSGIDSQWQLDLVD
ASHISKHNSGFNFILTCIDVFSKFAFAEPLRNKTGKTLVGAFSKMIEKRKPYKIQTDKGSEFLNKMFLTFLKEHSITLFT
THNIEMKASIIERFNRTLKTRMWRYFTQNSTLKFINVLQDLISSYNESYHRTIKTSPIMVTPDNEDEIRHTMYDNYTVGK
APKLKVGDKVRISRERQRFQKGYLPGWSEELFTVKKVYFDSPCYYKIIDYNNEPIDGSFYEQELQKVEKPDDVYLVESIL
KRRKRKGKEEIFVKWTGYPDSFNSWIPVNNLTDYKS
>Polinton-2_CB_int#DNA/Maverick 3427-4473  [Caenorhabditis briggsae]
MELVYCFKCKKYTDTTDIFNVETSSKRSMIKGLCQDCKTMKCKLIPTITGGSGLEDIKEVEISEKSKILRQSTSSEGERD
LLEKTYYSPESGFCGVNELQRKTKLPIKEVKEFLNEQDVYTLHKPARKNFKSQRVFVNGIDDQWQSDLVEMIPYEQENEG
YRYLLTIIDCFSKFAWVVPLKSKSGKETADALSSVFTKSKRKPKKMQTDNGKEYYNTSMQKLFKSLEINHFSTYSDKKAS
IIERFNRTLKEKMWKMFTHQGNHKWVDILDDLVLGYNNHYHTSIKMTPTQASKIENERIVYNNLFPSKLEGESNNKIENS
TKFKIGDTVRITKYKAIFDKGYLPNWSTE
>Polinton-1_NV_polb#DNA/Maverick 13567-16641 [Nematostella vectensis]
MRGSSYIQLPGGLRXRGLVNMKNEDNECFRWCHIRHLNPQDKDPQRVKKSDKAFVNELDYSGVEFPVTVKHYNKIEKQNR
ININVFSYDSEQPYPIYVSKERFEDHMELLLITDGSNQHYVLIKDFNKFMLNQTKHEHKKHFCMSCLQCFSSERVLTNHV
ENCLEINGTQAVKMPDKEHSTLKFTNHHKQQPVPFVIYADFXAITEKIHGCQPDDGQSYTGAYQKHTDCGFGYKVVCTYD
DKYTKQTQLYRGEKAVYKFMEKMLEEVKCCKNIMRKHFNKALTMSKHDEDQFQKAQECHICNKEYTKKDTRVRDHCHITG
KYRGSAHQECNLKLRINPEEIKIPVIFHNLRGYDSHFIMQEIGAIVKKHTYVNGKGEEKQMNINAIPNNMEKYMAFMLGN
HLTFXDSFQFMSSSLEKLVGNLPRESLKYTSQRFKGKRLDLMARKGVYPYDYMDSFERFNDKLPAKEDFYSTMYDRHISE
DDYKHARTVWKKFNLKTMGDYHDLYLESDILLLADVFENFRKTCLEYYKLDPCNYFTSPGLSWDAMLKMTDIKLELMTDI
DMFQFIEKGMRGGISYIANRYSKANNKYMESYDETAPSKYVMYLDANNLYGWAMSQYLPTGGFRWMTEKRIEKLNLAKYS
ESSKKGLILEVDLEYPKSLHDLHNDYPLAAERVNVSKDMLSEYCDKIATKYGIQTGLVSKLIPTLKDKEKYVLHYRNLQL
YTDLGLKVTKVHRVLEFDQSPWLKQYIDLNTEKRKNAKNSFEKDFFKLMNNSVFGKTMENLRKRVDVRLVTDEKKLLKLT
SKPSYVSSKIFNKDLVAVHKIKETLTLNRPAYVGMCILDLSKVLMYDFHYNYTKEKYGDKARLLFTDTDSLTYEIEEEDV
YQDFWNDKDRFDNSDYPKSSTYFNETNKKVIGKFKDEAAGIPICEFVGLRSKMYSYVKSDQSGGKTAKGIKKNVIKSNIK
HEDYKKTLMDDRQMHHKMKTIRSQNHKLGSYEINKVSLSCFDDKRYISKDGIKSLAYGHYKIGQ
>Polinton-1_DY_int#DNA/Maverick 6013-5093 [Drosophila yakuba]
MSKQQVVNEIHKPARKNFKRRKFVQKGINDTWQIDLVEMIPFSKENKGYKYLLTVIDTFSKYAFAEAVKTKSAPDVVQAM
ETVFRTSKCRPKNIQSDQGKEFFNSAFRELMTKFHINHYHTYTHLKASICERFNRTLKNRMWKMFSMKGDYKWIHKIKFL
VDQYNNSYHRTIKMKPVDVGVKNEEFILKSVYNIPKIFPKHKFSVGDFVRISKYKGVFMKGYEPNWTTEVFKVLKVKSTR
PVTYEIEDYMSNPIQGSFYEEELQKVKDKNAFLIEKIIKRKKNQVLVKWSGFDSSHNSWISVNDMLK
>Polinton-1_DY_atp#DNA/Maverick 7565-8281 [Drosophila yakuba] Polinton-1_DAn_atp 91% similar.
MFRQFIHPYTMLICGPSGSGKTTFLENLINKKNDLFNVSIDRIIWCYGEESAKPNFNNIEYFKGVPETIENETNEPILLI
LDDLMMGAFNKNVCELFTKGSHHRNLSVIVVTQNIFHKSSHTRDISLNTKYIIAFKNPRDKLQFQCLARQIYPENPMELF
RIYKEVTEQPHGYLLIDLTQGINDLLRFRSDIFNSEYTVCYSDEYGLQKEPKSLESEQTYIVCSQKGQQQTTEGNYKQW
>Polinton-1_EI_int#DNA/Maverick 15858-14818 [Entamoeba invadens]
MSFREGIDIKQKQIKEHQTRRLRHREQILNQKRNKIFMENIPFNNLTIDYPFKSLNKYESILKKDINKKQIISQDFNPKT
MKKLYSRLYYSPYFNSYEVDLAFFDSGNSTKQNIYMFIININTKYLYVFSLYNKNNDSLIMPFNTLLNVGVVFDNIRFDG
ESALNSTYMSNYFNKLNIRTYSSSSKHINKNRVVDRVIRTIRTAYDNTMSRYVNKNQDILIQEIVTYYNFSKHNKTGYRP
IDMQYIPNYNNMYKCYQLEYDYIKQMVKKNDEILYKQFENGFLSYIYGDKLIIYLDNSKDNTFRKTRNYFSTKATMIRYD
HGNIVCKLDDNDKIVTIPCYFALRDYI
>Polinton-1_NV_int#DNA/Maverick 9892-11359 via tfasty with Polinton-1_CB_int, 1 frameshift. [Nematostella vectensis]
MKSYCIKEKRVTDCIPDSERYEKTKNGRTMLKCTCSSCGITKSKFVSAKEGGKLDIHKMIGYLPKPKGGFTPGSYKYMGP
YNPLEKQLVYDKETGQVTDWKVKPLNKVDEIAAYHDICYDMGKSKGECDGKMVESLDRIPYGEMPKWGSTARFLINAKRK
LGLGVKKPKNGKKPSSEENWQEELADELHKPVKKKFTRRRVIVNHTDEIWCSDLVEMQQFSKWNKGFRYLLMVLDVFSKY
GWIIPLKVKKGETVTEAFETILKEGRKPEYLWVDKGKEFYNRHLKDLLEKNGIQMYSTENEEKSSVCERWNRTIKTKMWK
QFTVQGNTQYLEMLPKILKQYNNTKHSSIKMTPVEASKKKNEGLVYFSLYGNMETPKQKPIFKIGDKVRISKYKRNVFDK
GYTPNWTEEVFIVDKIQHTNPVTYKIKDLNNEDIQGSFYEPELLKAKQDVFRIDKVIRRDYKKKQALVKWKGYSDEFNSW
IPFRDLNAL
>Polinton-1_NV_atp#DNA/Maverick 4346-4984 R [Nematostella vectensis]
MDIPNYDSNTGANKKYKQLCKFMPSDNFRLLISGPSGSGKTNCLIHMLVTPLIHFDKIYLYAKSLEQSKYQDLIHTFSDI
SHHTGYSVIECSSDDVIPVGELDDETQKIIIFDDFVCEKNQAPIIDYFIRGRHKNCSVIYLSQSYYKTPKDVRLNCSHFC
VYDFPSTNERGLITRELGVSKEQYSKSXSKPYSFLYVSKPDKKIARNFYGRV
>Polinton-2_DR_int#DNA/Maverick 2667-3773 [Danio rerio]
MSGETKKMSELLKQTYYTPSNPGSLGGKKRLKDAIFNETGVRLSDKHISDWLAGEDTYTLHRTAPLKYKRNRVIVFNIDE
QFQADLVDMSAYSKENDNKNFLLTCIDVFSKHGWVRVLKNKTGVEVVKAFESILKEGRIPLKLQTDKGKEFLNKHFQSMV
KKYNITHFAPSTELKACVVERFNRTLKGRMWRYLTATNSKRYIDVLQDIVKGYNNSYHRSIKMRPIDVTKENESVVFHNL
YGTCVGRSVKSKCKFKIGDIVRISKVRGTFTKGYEENYTHEFFTIAACIPREPHVYRLCDYDGDVIDGVFYEQELQKIVV
NKNKAFKVEKILDKKKQGRETLVLVQWLGWPAKFSSWVNQKELVDVQTP
>Polinton-4_SP_pro#DNA/Maverick 4577-5107 [Strongylocentrotus purpuratus]
MDTLQIDHVLKNHPATKDYFEGVFALDEIPRVLTKNKYCYIFNSDTRDKPGSHWLAFYYNGSRGEFFDSYGNSPSFYSQD
FKEFLDKHIKTWDFNTKRFQGTFSTVCGQYCIYYLIKRCEGKGLRNVANVFSHDLNKNDRKVNTWFNQKYNSSFPTHDLK
FTLSQIAQSFEYREVNA
>Polinton-4_NVi_py#DNA/Maverick 7452-8820 via tfasty with Polinton-3_NVi_py, 1 frameshift. [Nasonia vitripennis]
MPSSDQSSTSAQSANTSKHTVSKKSRFKSCPWKKISCVIFCCFQRNGRGLSIQSPVVFDESVAHYEIHAHQPYTLSNFNN
SDEIRIGIQHQDLCVLPSRSSLHICGKLQKPDGTAIEGTRFVNNAICHLFEEIRYELNAIEIDRCKNVGLTSLMKGFVSF
NPSQSSAIENAGWLDIAETQRLDDNGYFDVSIPLGMILGFAEDYRKIVVNAKHELILTRSNSDVNSIVQTQVVVAGANVY
EDYQVEITKIEWLMPYVVLSDKHKIKLLNHLEKDRPITMSFRSWELYEYPLLPSTSKHVWTVKTANQLEKPRFVILGFQT
NRKGRKTANASRFDHCNISNVTLFLNSQHYPYGNLNLNITNNQYALLYDMYANFQNAYYNKEVEPMLKKADYLSYAPLIV
IDCSKQNESLKQASVDVRLEFEARANIPVGTSAYCLILHDRIVEYNPMSGDVKKIV
>Polinton-5_NV_int#DNA/Maverick 6511-7839 [Nematostella vectensis]
MGCFGADPLQPRFDCRTVWERLRCLFACCGGRIEIHASQLDGAPAPPPPTPTIVRARKKEKSMKKKKMTTMTQKTIDRLL
RPIYYDPNHPAALGGVDKLVRAVRSKGVRRAQVNSWLRSQPTYTLHKPYRRRYPRQRVVVNGMDEQWQADLCDMQALRSY
NDGYNYLLTVIDVLSKYAWVVPLKDKTGKRLVEAFESIFEGGRQPEKLQTDDGTEFKNRIFQAFLKSKGIQHFSTRSELK
ASVVERFNRTLKTWMWRWFTHKETRRYVDMLPQLVHNYNHSYHRSIRRAPADVVTYDDAQEVWAILYGKKRLGDPKKKKK
RAPPKFNVGDRVRISKVKHVFAKGYIPNWTEEVFTVGQRYNNTNQKNYAYRLREYDGTWLEGRFYEPELQHVSLDEQRDL
FRIERVIRTRGKGRNEEYFVQWRGWPDKYNSWVSAQQVHKIL
>Polinton-5_NVi#DNA/Maverick 4859-8546 via tfasty with Polinton-2_NV_polb, 3 frameshifts. [Nasonia vitripennis]
MLSWVELAIRDIYEYLLTLIKSGSDRVGVSISSEYFANGSAGLSYRLASALTGDDLWSVVSGLVQSNANFRVDESFTVCL
TVVEMPVGAGGSRRKNLTVDSVSQRSIIQISNRDNLCLPRALVVGEAKIALQTNDTPAMRAEWNVIRDGRRQLQHERAVK
LCQDAGVLVPREGCGVQELRQFQHYFTARGTALVAYEKDSMGSGEAPFFDGRCDACTTVIFLLYSELHYDVIVNIFGAAK
AKFFCTFCNRGYSNIEDHNCRQLCSRCFVSPPCSENEALQKCASCNRSFFGDVCFRNHSVAGSYKAKHKRLCDVLQICLT
CCKSVNRQRGKHECGKNWCRHCKSTHGYNQHCFIQPKKKDASAKKYLYVFYDLETMQEASYRGDESIKMHVPNVCVAQQV
CTECISSDDISEWCPSCGVREHIFTEDPVGQLLQLVVRDKTDFENIICIAHNARGYDAQFVLRRLVERKINCAPSIILNG
QKILCIRYGRTKFIDSLSYFQMKLAALPATFGLGETTKKGCFPHLFNTSANAEYRGAIPDAHYYSPDTMSSSEREQFLLW
HSEMRAANAVFDFSKEIVDYCRMDVTILRRACVAFRKIFLEVGDTDPFVVATTIASACSHLYRKNFLKPQTIGIVPRGGY
RRADKHSQKAVEWLLQCEREIGREIVHAGRAREYRLPEGFLVDGFLPSTNPAENPIVFEYQGCYTHGCPECFKNNRNKPN
AWGRTFDALLESTRAKIAQIQQLGYETREIWECEFDRVKRENPEIAKYVSEHPLISKITLNPRDAFFGGRTENFVAVYDA
KPGERILYTDICSLYPYICKRGRFPLGHPKVYVGEESDELTGGNLNNFSAIDGLVKCKVLPPRKLYQPLLPIKMHGKLLF
ALCRTCCEEMRQSDCCHPDASQREFSGTWVADELRKAIELGYTITEIFVIWQYSMTEYDPLTGEGGLFAGYIDTFLRLKQ
EASGFPAWCVDAESKARYVREYRENEGIRSFWGKFGQRDNLKQTVIVKEREDLLKLLTAEDKEVLSLLLVNEEVMYASWQ
YIDDAVESTPYTNVVIAAYTTTLARLKLFSYLEKLGKRTLYCDTDSCIFVCNENAQEYRPPLGSLLGDMTNELDEGTYIT
SFLSGGPKFYGYRTVNSRTGEVSEKCKVKGISLNFSNSLRINYPSIKSMIENYFKPDEENECINLKFNSIKRLPDHTVVT
REEVKSCSIVLKKRRYVTPGLSLPYGYKS
>Polinton-5_NV_py#DNA/Maverick 10695-11411 [Nematostella vectensis]
MSVFTGSXQVANXGMBLFTLPPTDVALANGHYIPYTPXDEGDNHIEWYISXSSTYIDLKKTHLRLEVKITKGDGSDLAAG
EKVGFVNNALHSMIKQVKVELNNRPVTLQSDSYAYRAYIESLFNYSKEAQXSYLTGALWYKDTAGQHEXTAVASSGSGVA
TNQGLXTRAAFTAESATVGLTGPLFCDIFHSERYLLDQIPIKIRIELQKPQFALMSQGENXLLXNSKFPREQFXACTT
>Polinton-3_TC_pro#DNA/Maverick 6692-6123 [Tribolium castaneum]
KKLPIKLPNRALTDNDLRRYAKLLKLPKFKGVFMRDELIHMKPDKTECAIINLDSKKGSGTHWVCYRKTNKQVDYFDSYG
NLKPPLELVRYLGNCNIYFNHDRYQFLSYNCGHLCLMFLHNKRTGVESTLSEHYEPPIDLEENSNYSIALIGFYTNNNIP
NIEEGTNKFYYFAP
>Polinton-2_TC_polb#DNA/Maverick 8033-11146 [Tribolium castaneum]
MKRAIVNVQNQDIHCFGWSVVAAVCLPMGPEHLPSSYPHWSTLFNFQGIEFPVKLDSIAKFESQNNVSINVYGLELLYVN
NKVKFEIVGPLYFTNFKKPVHINLLLLSDNDGNQHYCTITNLPRLVSSQLSKHHHSKFFCDGCLQYFTTQALLDRHSSTD
CGKLYARIPNNELITNRFGYNVPANVLEFQNYHHKMTIPFIVYADFECLLKPMSTVAPNPNQSFSIKTFLHQPYSCAYYI
KCSYNDQLSKFQSFRGQSSVVDFITALEIDLIEIYKKYLSIVQPMLPLTIQEEFDYLTATECHICQKPFQQNDIKVKDHC
HLTGRYRSAAHSNCNLNFQIPNFIPIVFHNLTNYDSHLFIKELALEESEINILGKTKEKYITFSKKICVGEYLNSNNRIV
KEHLHLRFIDSFQFLACSLEKLAAALDDAQCMEVKRYFPVDREFQLIRQKGVFPYSFIDDFSKLDLTELPQKIDFYDKLR
DEHISEDDYQRANTVWDTFHCQTLGEYSDLYLKSDILLLADVFENFRNMCLKHYELDPAHYVTAPSLSWNAMLKFTHVKL
ELLTDIDMLHFFKKGIRGGVSTCVKRAAQANNKFLPNYDPSKPTSYILYLDATNLYGWAMSEVLPLGGFTWLTQDEINSL
SIMDLTDTTPEGYVLEVDISYPHHLHNSHNDMPFLPENLIPPNGKCAKLIPNLCAKTNYIIHYRNLKQALQNGLELTKIH
RVLKFNQSSWLKPYIDLNTKLRNQTKNKFEKDLFKLMNNSVYGKTMENVDNRVDIKLATHWKKNGHKYGAETWIAKPQFK
NCSIFTENLVAIEMNKVQVTYDKPIYVGFSILEISKTLMYDFFYNFLKVKYGNNVQLLYTDTDSLILEIYTENVYNDIKQ
NIDRFDTSNYPENNIHDIPKTVSIIGKMKDEYAGVPIVLLYGTGAKAYCVQTVNDLIKKAKGVSKHVIDKSLTLLQYRAI
ATNPSSSSVFCVMNVFKSYLHNMYTELRNKIALSNFDDKRYILGNSIDTLAWGHYDIDRDRNLDSLIRELQKYVEPTD
>Polinton-2_DR_polb#DNA/Maverick 13192-9017 [Danio rerio]
MATKRCLDSDGNEQYRTVRFRGDSNDGHHNQQNTTETLRHLIQTVEDMDRPRSTTDALIELLNSVQSMSDNQPEPSFDLN
VFLSSPQNSDVSEDNQRELCFDPDQFLNMSQNIDACDEWSTTDFDMDHFLNTSQSSVSEQNSKSDQDQIVLSCQTGEGSD
TRPYQTFNPTAANMGLSQDEIETLVRQGGSVHKYTVIPRARFNGLEIHRRINLREISSTDLADYTTFLHELLSEIVSFSR
LLAGDSGVINITLRGESLTSDVNTLLSPRNNYDLDLFINQLEKIMQSNSEVQADQALDLCVSIATCKNGGGRRKIQDLAH
DEVIRRNKMNLFCPTNITNNLCFTICLAHFLNPQKSHSELEAIAANMQTTAGHKVQYKIAFDDIARFEQMLNIKIVTFYR
SNTGMLEKYTTTDKPHSKTAYLYLHDGHYFLIKNLTAFIGTPYVCEYCHVGYTCRRNHRCEYVCDVCNYPDCHTQTKQII
QCNDCLRFCRSRYCFEMHKQPPPGQQFAQCDVTKYCKMCNRRYYISGSKPKPHRCEAEYCVHCGESLATGGEHECFIQPY
KPMEPSDRYIFYDFETRFENGKHVANFVCAITFNGEEFVAEGVDCVDRLIKKFRRPKYRNYTWVAHNASGFDNFILLEYF
VRMGIPPKITMRGCRLIFMFDRTYKQRFLDSYLFMPMRLSKTPEAFQLDNIEKGYFPHVFNRAENDCYIGPYPEKHFYGY
ETMSDKERSDFDAWYCTVSGKVFDFKKELAKYGKNDVVLLRKACIKYRHEFILCTDLDPFTFTTLAGCCMGVYKSKFLPK
DTLALTRNDGYTNQNKTYSNASIEWLEYVAKSRSIEIQHALNGGEVSFGKYHVDGFYDDGRVKKAFDFLGCFYHGCERCY
NPYDINPLSKLSYGVLRRQVNDRCEILQRMYGLQVEFMWECDWKAAKNSDVGVMDFMSTYKRPERLKPRDALFGGRVNAF
KLYHKTSDDEKVFYRDITSLYPFVQSTKSYPVGHPKIIFKDFENLENYFGFIKAEVIPPRGLFHPVLPYRTGGRLMFPLC
RSCAEEQNQDTPCQHADKERALTGCWVSVELSKAVERGYVVSEVYEVWHFSQRSDTLFSDYVKTFLQFKQESSGFPEDVV
TDEEKESYVKDYFEKEGVKLNIDNITFNAARRSINKQILNSLWGRFSLKSQLPSSELISDPEQFARHIFAKGHDINYFSF
LSDSIALVQYTQPYGKGKSTRDTNVFLGAFTTCYGRLELYDLLEKLGERVLYCDTDSVIYTYREGEYDPPLGPYLGELTD
ELDGGDYINIFASSGPKSYGYSTAKGKVCMKAKGITLNTVNSQAIRLDTLIGLVDDYVSGRDNSRHVLAHTDTIVRNKTQ
FTLHNKALVKKFKVVYTKRVLLPDYSTVPYGF
>Polinton-2_XT_atp#DNA/Maverick 12085-12747 [Xenopus (silurana) tropicalis]
MDTRLQHPFSCILAGPSNSGKSFFVKQLLYNANTLLSHKPDNIIWFYSCWQSLYDELMQKLPNIQFIEGLPNSFTDDVLF
SSDEINLTVVDDLMEAASESSEIEKAFTKYVHHRNLSIMYLVQNVFCQGKKSRTINLNTKYMVLFKNPWDKLQITTLARQ
MYPGKSQFFLEAFEDATSKPYGYLLVDLRSTTHDDYRLRAGLFPPELPLVYIFKKQGSKKR
>Polinton-3_NVi_px#DNA/Maverick 7315-6361 (reverse) via tfasty with Polinton-1_NVi_px1, 1 frameshift. [Nasonia vitripennis]
MADFNQQIAVLREVEKARNAIKRKHTLLKSQKIDFEKAVNDSVKPIVDPLEKLIHVTETTNHMKEKSEPKVETGRKKKLK
IEKVEKKDDIAEDSEGDIEVDTEDDIKFESALSESEEEDLEETIKNKKKEIEDEYIDLLLNGQMQTLDTVYGVRRMRNDK
LKVGDSFIDFDDNFITIGRKKYKKRPGLIQLLFMKNPDQSLITAEDMKDYDEILNDTNAHRKYYLPHEAIRVQDSKKYTH
YISKSMKEVKLKKGKGLSSISYKVARKNAYMDYIYWDDPNELVDRLRLLTAETAAGNQSHINEIQSIIEELREAEYIY
>Polinton-2_XT_pw#DNA/Maverick 3325-3765 [Xenopus (silurana) tropicalis]
MVAVKNYGEPHIYSSYYKAQAGSGIAGFHGTAYQHGRGLGGLFRALIRQAVPLFKRGIDIVKPHVKTAAKNIAKDVVGKV
STAVMNKLTSDGQAGSGLVYIGKNRPTKKRKRTPSLPPWVPQNQNKRRRCKDSKKQHFGKRNKSDIF
>IS2_tp#DNA/IS 397-1320 [Root]
MDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTG
RVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTD
NGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGY
RSPREYLRQRACNGLSDNRCLEI
>ZNF862_Hsa#DNA/hAT-Tip100 403-1106 (end) Transposase-derived region of EXAPTED GENE  NP_001092690 [Homo sapiens]
KGRPPGNKKMVAVREADTQASAADSALLPGSPVEARASCCSSSICEEGDGPRRIKRTYRPRSIQRSWFGQFPWLVIDPKE
TKLFCSACIERPNLHDKSSRLVRGYTGPFKVETLKYHEVSKAHRLCVNTVEIKEDTPHTALVPEISSDLMANMEHFFNAA
YSIAYHSRPLNDFEKILQLLQSTGTVILGKYRNRTACTQFIKYISETLKREILEDVRNSPCVSVLLDSSTDASEQACVGI
YIRYFKQMEVKESYITLAPLYSETADGYFETIVSALDELDIPFRKPGWVVGLGTDGSAMLSCRGGLVEKFQEVIPQLLPV
HCVAHRLHLAVVDACGSIDLVKKCDRHIRTVFKFYQSSNKRLNELQEGAAPLEQEIIRLKDLNAVRWVASRRRTLHALLV
SWPALARHLQRVAEAGGQIGHRAKGMLKLMRGFHFVKFCHFLLDFLSIYRPLSEVCQKEIVLITEVNATLGRAYVALESL
RHQAGPKEEEFNASFKDGRLHGICLDKLEVAEQRFQADRERTVLTGIEYLQQRFDADRPPQLKNMEVFDTMAWPSGIELA
SFGNDDILNLARYFECSLPTGYSEEALLEEWLGLKTIAQHLPFSMLCKNALAQHCRFPLLSKLMAVVVCVPISTSCCERG
FKAMNRIRTDERTKLSNEVLNMLMMTAVNGVAVTEYDPQPAIQHWYLTSSGRRFSHVYTCAQVPARSPASARLRKEEMGA
LYVEEPRTQKPPILPSREAAEVLKDCIMEPPERLLYPHTSQEAPGMS
>Kolobok1-1_NV_tp#DNA/Kolobok-Hydra 319-2220 [Nematostella vectensis]
MQYLPKYRSSHFNIKSKYNLPFYSSNMPKFANQRRKKRRFCGNRFTGSLNLEESEYKRVENSPNESENEPSCSTDMEPVQ
EGNPAKSASFRKLSKTAVEADTVPKPSQSTAKVSDAKVTGYRFVDMDILSNIFALLRCGDCGEFCLVLGEDEHNRKGCAS
KLRLTCQNCDWKHITYTSKVQGQSYEVNRRLVYSMRTLGKGHTGARKLCLLMNMPPPPTARAFTKNSRTLLKHVKEIATK
SMGDSAKELKADTSDGPTNCGASFDGTWQRRGFSSLNGCVTGISIDTGKVLDVEALTVSCKQCKLHDHLDKDSEEYSLWK
ADHNDCKANFRGSAPAMEPEGVQRIFNRSVETHNIRYTEYYGDGDCKSFNRVEKVYEADNIIVKKKECIGHVQKRVGNSL
RKLKRDTPGLGGKGKLTDALIDKLQNYYGIAIRSNVGNLEQMRKAIHASLMHCASNEARVLHDHCPTGSTSWCKYQKDKA
DHTNTFKHSAGLPLEILAKVKPVYVRLSEASLLEKCLHGKTQNQNESLNAMIWQRVPKEVHVGRDILELGLYDAVCHFNM
GYSSVLRLLEALKIPAGKYTEAGCGLEDTSRVRLAEYKSKEASKRRRKVLRGKRKKKEDKKKQAEGSLYDPGGF
>Kolobok-2_HM_tp#DNA/Kolobok-Hydra 253-2046  [Hydra magnipapillata]
MGKSCRVKQSTQSKKSRRFHGNRYTKNLTNNSTLSVAPVNNNVTCSENDLIFNNSSLDLSISSKKVEKIETPHQSNNKTV
GYRIIDIEILSGVISQLCCKNCLQSGLFLEECFPKKKGFSSMLNICCPNCNKKIEFYTSKTCSGKKNFDVNNRIIYSMRA
CGQGYSGLEKFTSLMNIPTPMTKNNYNKIIKHVSDCAKVVAKETMSDAVKDICQSSSNIVDTAVSVDGSWQRRGFSSLNG
VVTAISMDTGKILDCEPMSRSCKACSLKLKLKENNPNAFEAWKSSHVCKLNYRGSAPGMEVTGAQRIFSRSISQNKLRYV
KYYGDGDCKSYSYVKDTYPGITVCKLECVGHVQKRVGSRLRILKKNVKGLGGKGKLTNAIIDRLQNYYGIAVRQNANDLE
GMKKAILATLFHVASSAENNWHAHCPDGINSWCRYKQDKANLTSTYKPGAGLPLSVVSHLKPIYIDLSQEELLKKCLHGK
TQNQNESFNGMIWQRIPKTKYVSLTQLELGVYDAVSNFNIGRKASILLFEKLNMIPGIYTLQGCSTMNKKRLIFAEYQNR
ITSKKRRKVIRGCKKKKDDAENDQEGCLYDPGSCSYK
>Kolobok1-1_TCa_tp#DNA/Kolobok-Hydra 1007-1765 (fragment) Element has fragments of a Kolobok-like transposase and a ISL2EU-like exonuclease. [Tribolium castaneum]
MYYKKKNQTTLPHKCFKNWKNTSTSMEAAIILDGFKKSVDMHNVRFKNLIGDGDSSVYKKIHNARPYGPNYFIKKIECRN
HILRNFCTKIREIAKTPRSDINIKTFLRNNYLKFRTAIVSAIKYRKNENCTFDQKAENLKNDILNGPAHIFGNHSKCATY
FCKTVGQITNAVAYSDFKNSSLFELFMQALKRVANLSSSLLYDVDNNSVESFNSVVNKLVGGKRINFSERGSYHGRCFAA
VVNINNKNKLICI
>Trillian1_tp#DNA/hAT-Tip100 481-1212  [Takifugu]
LFCQPTMAEVGEEMDLVADLLSKPFSRRTFEEIYEATERTAGAPSAQRGPAQDPRAHYRQLHGRILDNIICQTQTRFQDH
EKLIFVTLLDPQKFREYQKNFPHAAFSSLAQSHGTLFDLPRLRTELTVMYAMDDFAGKSPTDLLDFLQILQKNLNESMRQ
LYTFVCLAVTIPVSTASVERTFSALKRIKTYARNTTGQARLSALASMAIEKDFLMELKRTDNLHNRVIEIFLRKERRMDF
VYK
>HAT-6_BF#DNA/hAT-Tip100 1-2526 [Branchiostoma floridae]
MSQNVIFLSVCVADEAPPIPLEEGRGLVESLFDIKNKRVHSHYTCRFNNCSSISHTESQRMKTLTDKFKHDWLFEKTVSF
DLHVGVWWLVYVEGEGMYCLLCRKHKQVNQQNKSDKFVVLPSIRLRKAAVTDHGGCDTHTRSWETESQQRRGSIIHRELE
KKRSTHFTAVHKAFGCAYFLARENVANRKFLPLINFLEDVGVPDVKYFEHRSQGSIREVFLTIGETIQKTVIERIKRSGV
FGVLVDDVTDAAALEQMITFVQFVDTEENKAAVAFLGTKNVLESHESANAEALLDNFTELLDTCGLELSNIHGLCSDGAS
VMLGARNGFAARLKRLPGCGKVLAFHCVCHKLALACCDTSADLKAIKGVEEVLLSVWKWLSYSPKRTAAFVKAQLAIKGM
DGAKSPAAQQSVCRKLKRACHTRWLSFDAAVKTVYDDFWAVLQTLSAFESCPVATGLLKKMKCPKFLGIIIILKNVLPHL
AELSTKFQTSTLNFAQVQPAIDDAKDKLQNITQSNIVCKELKADLHPQHGQFRHTGIVLKADVEGQVAGLVHKYTDALCE
NIDRRFAGSLPVMSALSIFDPEALPTPQSPLFSSYGSDKVDVLAAHFFEESQEQQNELRAEWGKFKYDLHTNLKSQLQSD
TLTGSATQWCLERIIALKTSYGHVFPLLVHIAKVALVLPLSNAWPERGASKVKLIKNRLRTRLGGDMLNALLCMSINGPP
VNSPESRSMLTSAVETWFAQKKRHRSKKLAEDRKNQQRVQRAIVKLRQLYAPPHPEEEAPTHPEEEARMDQDQESQAADE
EVEINHLRVLEREDAASVAKAIMGETPPDSESDSDSDDYETM
>hAT-1_PTr_tp#DNA/hAT-Tip100 973-3339 Near-identical to previous database entry 224126313_Ptr_tpcopied from  gi|224126313|ref|XP_002319808.1| [Populus trichocarpa]
MSLDKYFKRKSLEDEESIKASSHVTQSSSKKSHIEINPDTLLADPGLRRPIYEYHINDRDAIRRAYLQKGPCQPSHCDFP
QKQFGNISTLRRFNPAWFGAYPTWLEYSIAKDAAFCLYCYLFKSKGGVDSFVGDGFSNWKKKERFDLHIGKSNSSHNAAR
IKCENLMNEKQSIMTLLSEQTVKSQSDYRTRLNASIECARFLLHQGLPFRGHDECECSSNQGNYLELLHFLSRNNEAIKR
VTFSEAPRHNKLTSPDIQKDITQAAAEEITNVIIKDLGDSLFSILIDESRDISIKEQMAVVLRYVDNNGHIIERFLGIQH
VRDTTASSLKAAIEALFSKHGLSISRLRGQGYDGASNMRGEFNGLKALILNSNPSAYYVHCFAHRLQLTLVAVTKKHNEV
GDVFNFISSIINIVGASCKRMEVIREKQYARIIEGLENGEISSGRGLNQETSLRRYGDTRWGSHYVTIIRLLAMFSSVLD
VLEIIREDGMNSEQRTEAVVLTDIMESFNFVFMLHCLRRILAVTNEFSQALQRKDQDIENAMSLLKTSKERFKMMRENDW
ESLLEEVSSFCIKHDIDILNMDDEYKLRGRSRRKSQGITNLHHFRYELFNNIIDMQLTELDDRFTETSTELLLCVACLNP
SDSFSAFNKEKLXRLALFYPSEFSIVDLMVLGDQLDTYIIDLRGDDEFSGIEGIASLAEKMVKTKKNLIFPLVYMLIKLS
LLLPVATATVERVFSAMHIVKSRLRNRMGDKWMNDSLVVYIEKDIFDKIDNEAIMKRFQNMKTRREQL
>HAT-12_Mad_tp#DNA/hAT-Tip100 1185-3539  [Malus x domestica]
MERFFKKISVPPSPVIEKNNDTRGXDSAEFILSNLPSDPGKRIRILDYNPNIRDQVRRAYVLAGPQQPKTHNFPYKKYGD
TQRRFNPAWFDDFPTWLEYSVEKDAAFCLCCYLFKPNIGEQAGGDFFVGEGFSNWKKKERLLTHIGGVNSAHNQAWSNFE
ALRSQKQHIQSFFSKTHDEARIQYRARLNASIDCCRFLLRQGLAFRGNDESEHSSNHGNFLELLQFLADHNEDVKAVTLK
NAPENHKLTSPDIQKDIVNACATETIKAIIEDVGTSLFSILIDESRDVSTKEQMAIVLRYVDKNGHVVERFIGIEHVTST
AALSLKETIDEVFSRHKLSMSRLRGQGYDGASNMQGEFNGLKALIMKESGCAYYIHCFAHQLQLALVAVAKKNIQIESLF
SIVTILVNVVGASSKRCDLLREKQSIAVIEALNSGEFTSGKGKNQETTLKRAGETRWGSHFGTLVSIMTMFSSILDVLEV
IADDGVSSQQRCEANNLLDSMQSFDFVFNLHLMKDILGITNELSQALQRKDQDIVNAMKLVGVCKQRLEIMRKSGWDSLL
SEVSEFCLKHDIDVPNMDDMFLSRRRGQRKAQAVTNMHHYCVGIFYVVLDWQLQELNNRFNETNTELLLCLACLCPADSF
SAFDSQKLLRLAQFYPKDFSMNELVILKIQLETYIVDMRSSIEFSGLKEIGDLAKKMVQCKKHKVYSLVYLLVTLALTLP
VATATVERAFSAMKILKNRLRNRMGDQWMNDNMVIFIEREIFDGIGNDVVMQRFQNMKTRRGIL
>strPur2_81956_tp#DNA/hAT-Tip100 797-3151 1-2101 via tfasty with hAT-6_BF, 1 frameshift and 1 stopcodon.  [Strongylocentrotus purpuratus]
KHEWLVDRELSYCSETGMYWLTYDEASHGMYCILCRKHDVGNARNKTKAFNLEPGKRFRKAAVEDHGSSKQHRSAVTAEL
VRRVSYFHKESEGYRRHHDDALYNVFCACYFLAKEEIANCKIIPLLELMERAGVMDLKYFHHRSQSSIREVFITLGETIK
DDVLKRVHEARTYGLLVDDASDIAVMEQMVAFISYVNHETSIPQVDFLSITNVLAGASNEGANSRVLFKEVVQQLEQCEL
EVTNLTSLVTDGAAVMTGRRSGLATLLKEVSNQLIAIHCICHKFSLACVKSNDQTKYLAIVETVLYQLWNFFENSPKTSA
KYMHIQLEYKKAVLRTVDGxKEKVIVRKIRKACRTRWLSLDKSVEAVYLDFVPILHTLHFFSETDAVATGLLKKMKTPQF
IGAIYIFRNVLPILARLSKLFQYGTVNFSRIRPALQASKHDLQVVVDSGIVLTELKKDVDERLALTEIHPTPYQYEMIST
MLNKYVSALKENLDRRFDDALPVISSFSIFDPTAIPPSDVPLSNYGVKEVDILAIHFYPSSEADREKLRAEWANFRFELR
EWQSMAAVRSGTSTPTEWVLQRLASMRNTYIRVYPKLYFIAEVCAAMPVSNAWPERGVSTMRRVKTRLRSSLKNDMLEAL
MHVSINGPPASSTQAKEIISQAVKRWKDVKTRRRLPKCRTSCEQVTVMADAQVKHILTLK
>hAT-82_HMa_tp#DNA/hAT-Tip100 572-3358 [Hydra magnipapillata]
MNEPKKRKGGAQKLREKNQKLMKLSANKCLKISDFIPNRNPDISKADEKVTTKSKNDVQIQINSNNNTTSTTGTESEDIT
ATNEVLNSDDVAVENLSECTQNEIQVQIDSNISIAETVSHHPACDSDMVVDQGVIIVEQNIDWFSRPPSTLLNKFFEIHP
IQTTRDPIIVKSFVRKNGTNRKWLSYSEGNDALYCSICLAFLPTVVMSSFVSGMTDRRHIHQRVDEHEKSASHNECTENY
FQHVSRSNVSNLLFSTQISVRREQVQKRRLVLLRVIEIIKVIGKRGLSYRGHEFEAAYTLSDNSIDHGNFLEMVLLVSKY
DTCLKEHLNSCIEQSEKRKNTGSTGRGSMVTFLSKTTITKLIQITSRSIQKIIAKEINSAGMFSVQIDTTEDITTKNQCS
IVVRYVTDQIHERLLTMIACDSSTGEYLSSLVSETLKALNIDILKCVGNSTDGAANMNGEYNGFAAWMFKENPNQIHVWC
YAHVLNLVISDTCSVVLSSISLFNLLNDVAVFIRGSYTRMNIFETENQNDIHNRRISTIGETRWWSKDAALTKIFGTFAN
PHSSFYVELVVALSHIEDNLSFKSEVRVKAKGFKEGLLKYDTILTAQIFLRVFQLTTPLSKYLQTVNMDILVAYNMVTQT
IDTLKKYLEEFDIVLEATNNFVCKVNEKLEQHELEAENTLPEKRIRKKKVLSGETRPSEFEIHSDVLNSYKVKVHDVIFK
SIIESMSKRFKKSRELYADFAILSPSNFEQLKAHSVPTSALNKLSEHLLPFDEEATAENLRTELTSFASNWNNIKESLLS
TYDIMDINKESVEELEYNCRKSCTACKNCTVCCYLVLIQYNLISEAYAKIGLAYKYTLSLSFTQVACERSFSILKFIKNR
LRSSMAQENLQSFMLMNTEKEILSNLDPETIIDELAETSDLFKNLLVV
>Kolobok-9_HM_tp#DNA/Kolobok-Hydra 475-2267 via tfasty with Kolobok-7_HM, 2 frameshifts and 1 stopcodon.  [Hydra magnipapillata]
MAKGNKQNNARKLKRKAPLNHFRKQQKNDLLVKTNSLNTISMCSSAKKLNMGIQNHLECQDLYDYNILINFSVLKNLFLE
IACPKCHMLTINLFDNTQKRMGFSHNLELKCTSCDQWSHTVYSSKECVKNSSNTTGRSIFEANARAVIAFREIGRGHSSI
NTFTQCMNMYGLAENAFDNLNxNEIYKAYDDAALKSMKKAAEDLQDSSDGPTQQRIKIDGAWQKRGHSSLNGFVTGIVED
KVVDVQAFSKHCKGCLMWEKQKGSSSYDRWKAKHVCNINHVKSSGAMEGAGAVKIFERSVEKNSLIYKEYLGDGDSSSYK
EVVAANPYKDFGIKPLKLECIGHVQKRLGTRLRNLVKSHKGTKNPISGKGKLTEKTINSMQTYYGKAIRNNLNNVYAMKK
AIGSVLFHCTAFTDENQRHEMCPRDDTSWCKWQLDKTNNTNKFHKTKTFKNTISLPMSIHYLLKPIFVSLSDDELLNKCV
HGQTQNANESFNSVVWTRCPKNVFIERRTFECSINSAILHYNDGSGGVNAVLGHFGLHGKATADKSIARDCQRVTRMEKR
SSPIVKKQRKKLRAFKKGYMDKENESEKRESYTAGGF
>Polinton-1_Crp_3p#DNA/Maverick 12485..11748[Crocodylidae]
MCDGDFYITLPSNACASIFPQNTSSSFTIQLVKPLDLLGNWEIGLAEIQYPHSWNNINEDTPFKIISGTKKWGYSLPRGY
YTTITELLDLMNNTITTXPAPPELVMHYDRAFGKVRLKSKDNSYGFYTHGELAYILGMLPGVSAKKTPFPADITGGFNSL
YVYTDIVEHQLVGEFSVPLLRCVPVRGSNNEFVTITYDNPHYVPISQHHIDTISIEIKTDQNKHVSFRFGKVIVKLHLRP
RKTLRF
>Polinton-1_CB_pc1#DNA/Maverick 2939-5428  [Caenorhabditis briggsae]
MRKLFSTITVIFFLTWFQETLSKPIICTDNSPVQYFRIPKLHKCNYHRILNSQSEIVQYEVFKPNIIEYISEAKLCKKLV
SEVSMYTDFSGYEHLVEKELNNYPITLAECREMINSKKCGFGSLTKGSSNTWSTNNKIDVDYPNRFTSFFTPKRYYKENC
IVIETKVYSHYNQTKPTNIMAEMKNCKYQDGFCEIKKNEIVTWDVNREQKCQYISIGILDGMYSNKLWVNNKNQIALNFQ
SDKTIQDCNSSLMISDEGFAVKRINRAASQYSPRQIPVSIPSHSQRQQLEEDRRKREQEEQRKQQEDNRRREQEDSRKRE
EQSRRDQEDARRRDQERQKQNEADFEKRKQEKLKREEETEKKKQEKIRKAQDEAVRKLIQQRQEEDWTVHDEKPKDNRHP
PKSNRTKREITDHRAIFQPLPLPDYNEYLKIKQDCDNLPSYEAFKNSRDGCDSLTSYTNFINSIANYEKNQQHLNLSQTW
RPLPFPGYEEYLSIKEDCNILPTYEEYKTIRDSCHAFPSYTDFIKRIAKYEMFETGKLRRKRELYSDFQAAGEFQYLENQ
SNNLIRHTTEVMCDIFNEQNEVLESLIRENPRRYIQKQLNHTAIKVKLIDSQEPVVQVTFCKEIDEEEIDFIDVTHFDGH
KLSLALTLGQIPIKIKSLGDKVWYYKNDYSGGVISSKPQLHPMIDFRTNITNMRNFKEFDLKFLDDKVVFHEHILLDLKT
NIEEELIEEMREKSDVSIQVHANNQDSTLPHEILDDVEGFFGKWWLRIWRVGVTLGVAVVYLFVGRSIWMILSPKTFIDR
RNNRRRRREYEAVELRQMIQRPSIHSLTVD
>Polinton-1_DEu_atp#DNA/Maverick 6927-7610  [Drosophila eugracilis]
MRLISQKQKIIVRNINDENEKKQPPRHSSLLPNTIRALIVGPSNCGKTNIMLSLIESPNGLKFENIYVFSKSLYQPKYEY
LEKLIKPIKGMGYHTFSHNDGVLDPSEAKNNSIMIFDDVACEKQDNIRSYFCMGRHKNIDSFYLCQTYTHIPKHLIRDNA
NFIIMFKQDDLNMRHIYRDHINTDMGYDTFVEICKKCWEDKFGFLLISKDNDMDNGRYRKGFDQFILI
>Polinton-1_DR_pw#DNA/Maverick 4850-5302 [Danio rerio]
MPYYNTHHGEISDYVNYYQNQAGGGLPGYAGGGVMYGSGLGGLFRGLFRMAVPLLKKGFNIAKPHLKTAAKNIASEVISN
VISRNRDERQQDGSGLMVMARKRMSKPPGVRRRGRAIKKKRTVKKTSLTRRKRKKTVRRNTFAKRNINTIF
>Polinton-1_DPe_polb#DNA/Maverick 1619-5610 via tfasty with Polinton-1_DAn_polb, 2 frameshifts. [Drosophila persimilis]
MASKVKCNMCDKSVDFSEFQSHYERCSDSRNNVVCDLCSKSIDLIEFDSHYEACLGPRNAFEILMSKGSNSSDLQGPSTS
GASKRPRLDTPMELRIIDCSICGESYPSSRERRHMMSDKHKNARAAQLEENENVILISTESRFPLKSYRVHSNKSEQIDL
KEFFHDCKNDIINLLRHCMSEYRSIKYNLKVYGLYVKNTDDESLTETMKHFITPYKPIYENELIDDHLNDTIENLITLSS
EFQEKDSGWAIKCFKYFELTMIKLEHIAANRFIQAPKKIKSRNALINVKNDDDFCFKWCVLASLAYGTHLKTIYQTAALK
KISRDKLTIPSSYRCGNIRQDIIYYEGVRLNFSGIEFPITSKGIKRFESANEDFSINVYEVDENGKNVVGPTVRTKKIRT
HHINLLGINSDNMQMMHYAYITCMRKLCYSQHSKSHNTAYFCENCLQFYSTTNTIHDTKECGKVAALYPEPNTKTVFKSF
SKKLSPPVVIYADIEAVLENYHINLNDPSKSSTTMAQRHTACAASFYIVHKYNEHLNEMWTYEGKYFHIPAKAINSKHYD
FVISGPDCIQKFCQALRMKTDGLYEKYWKSYKKPIYQFNIWDEDYQEHGVCYACEKQISDDDREKFFDQFTGQYVGPIHK
LCKQTFRLSDPFFPVVFHNLSRYDIHLFVTSIKDELRPIPCNKELYIALTQICKLDESYLHQYKIRYIDSNRFLNSSLEK
LASYMNIANFKILKTKYQGEKFDMLRRKGVFPYDYLDSFEKFDESLLPSRDNFYNSLNDEECSVEDYNFAQKVWSAFNCK
SIRDYLKLYLESDVLILADVFENFRSLCSRVYRLDPINYVTAPSVSWDAMLKYTRVELELVSDPDIYNFLKTAVRGGLTQ
CTQRIATANNKYLNNKFKPTEPINFLSYIDANNLYGWAMSQPLPFSNFKFLSNDEISSFNVLSISASSDVGYILEVDLRY
PDDIHNKHNSLPFCPENKIPPGGKQTKLIADLTDKKNYIIHLKQLQLCIEQGMILEKISRVLSFNQSCWLKPYIDLNTSL
RKLASNDFEINFYKLMVNAVYGKTMENVEKRREVALVKHYDSRQNSAGFRQRIARHNFHSVEIFGDNLAAIESTKSRIFY
DKPIYIGVSVLELSKWLMYDYFYNFHSVKCPSSKILYMDTDSFIISSEEDFYDLIKFNPNRFDTSNYLASNRFGINLANN
KELGLMKDENAGKIMTSFAGLKAKAYSYLIAKDDNTDYNVKKVKGVKKSVVKRLTHTHYIECINKKNYYGQQRVIRSRGH
KIYTEIVNKISLNYKDDKRFILPDNISTLAHNHYEIKNILDASNNTQNMV
>Polinton-1_AMi_3p#DNA/Maverick 11647..10232[Crocodylidae]
KEEGKSTGQPDTKNQEAAWEKEGALSWRKQKYILTAMAFVHCGSEECAKSELDVFQIAPTQTCIEKSLYVEIPPLSAITE
SGPLDFFIAGNGEDYMDLNNTLLYLCCKIVKGDGTDLDAGAAVGLVNYPLASVFSQLDVTLGDHLISQSNNCYPYRAFIE
SVLNYSDDTLATQFSAGLFYKDTPGHHETVARDGDNHGFRRRANLTDRSKKIELLGHLHSDLFFQEKLLLNGVDVKIKLT
RSKDAFCLMGAAAAGQCKLKITSASLFVKKVKVAPGVRLGHAEALLTANAKYPIDRVGMKVFSIPAGSRVSNQENLFLGQ
LPKLIVIGFVDNDAFSGNYAKNPFNFKHYNINFVALYVDGEQTPTKPLQPDFENGNCVREYMQLVQTAGKHMKDRALIIN
REEFALGYTLFAFDLSPDQECADHYSLIKTGNLRAEIRFAVALPTTVNMIVYGVFDNVIEINQRRNVLFDYM
>Kolobok-12_HM_tp#DNA/Kolobok-Hydra 439-2223  [Hydra magnipapillata]
MPNKQNSTRKKSRKWNGFKPSDILKSKPADHEISCVSSRKLDVSFSSDKCDSDDYFILINFLLLKKLIAHTVCPNCFIGN
LLIKDNVNSRMGFCHLLEMKCTKCNFSKNFRTSPKSKNSLNTNEFPIDTVFPIYKKELSSLESPYEINLRAVIGLREIGA
GHESMKTFSFCMNLYCLSPNGFNKLNKTAMLVYKIAAEESMQKAAFETKSINNSLEMKEVRISIDGSWQKRGHNSLNGVV
TAVCSDKCIDAEIFTKHCNGCKMWRSKKGTPEYQCWLVDHQCESNHKGSSGSMESVGAVAMFKRSLQKNKLIYKEYLGDG
DTSSFNDVIEADPYKEYGIMPVKLECVGHVQKRLGTRLRNLVKAQKGTKKPISGRGKLTENCINSMQNFYGLAIRSNVGN
LYSMKKAVYAILFHFTNFPDSYTRHQFCPRGKYSWCKYWALNQKNYKPKSTIPLWIKDLILPIIINLQSDELLSKCLHGN
TQNANEALNGLIWARVPKRVFVSKSTLEMGTYSAILAYNDGAKGVISVFRHFGLHGKVSNISATSKNKKRISQMRCKSSE
KGKKRRKTLRAIKKGHLDEEKAKECNDSYVSGGF
>Kolobok-11_HM_tp#DNA/Kolobok-Hydra 386-2173  [Hydra magnipapillata]
MANKRNKVRSLKRKYQGNRYSRKEKDVVDCSRKSETTSASKLKNKHNFNGATNCDSEVDNFFFICNFRVIKNIFELYSTC
SECNSKLTFLHNKSVRMGFSIGIIIQCSNCGFESTFYSSPTINQSSKPGSNPYEINLRAVMAFREIGRGNEAMSTFTAIM
NMPPPLTNHSYNLTNNKLHKVYKEISLQSMKAAVSELREILNANASDDEIIDCGISIDGTWQRRGYSSLNGVVAGLSHEN
KKVIDVFSLSKFCMQCEVRKRINNPIDFECWKATHNCQVNHFSSAGSMEAAGAQEIFHSSIQKYNLRYTKYLGDGDSSSF
SNVVKSKPYGDCIIEKLECIGHYQKRVGSRLRQKIKDFKGRLLSDGLKISGKGRLTNKSINTMQNFVGMAIRQNKNDLLC
MRNSVIAVLYHCTNFPYEVTRHQFCLKGKNSWCKWQSDKVTGKTSYRQKINLPVTIMEEIKPIFQELSNPEMLRKCLHGM
TQNCNESFNGFIWQRCPKATFTARKILEIAVYSAILNYNDGFTSLRYIFKMLGFTGGIYFEKGAFKKDKKRLSSMSRKST
DMNKKRRKHLRSIKKGYLDIEKENEDVNFYASGGF
>Kolobok-1_CB_tp#DNA/Kolobok-T2 529-2436 (3 introns)  [Caenorhabditis briggsae]
MSEGKRRRCQFCWAMVPWKESTVITSSKTGREKWIEALGEGFRNQLEKVGTRRAYICRSHFPSGEVHGRRSVYSLPRLAA
DGDVADTSNLDFSEGDNGFEIIEDSRVADNEESFVLLNTDGEEDGEDSEESYGEQETDSSFVPESEESWSDDSEVEEDET
SGNLEYAFVDLNCLIDSLKYCRQCHSEAVEAAVLKPSGYAVSKIASMLHTVRAPYLRKYCYYDIVQHHVRPVVQNVHDGT
QKKVMDFVIKNCEDNQKGLDLAESSKSLEPKSLDLALSNLMSSLTAPDGSELVHIDSITTDRDPAVGKLLNTKYPGIRQF
YDGWHFVRNVKKIIWKQINGFVFNKFRKCEHDPMNHTRNDYIDVNNPKHEKALRLLWNMIVSDKRLKDLEKVSPHFNTSE
VESFNSLSTIYHPKSYYL
>Kolobok-5_TV_tp#DNA/Kolobok-T2 467-2965  [Trichomonas vaginalis]
MEYSIPIMEGYTIEEILITYKADDCQKRVYHRTVYSNKKPFSHFINLNQLNSKQDHSQSNVKEETIFNVKFKPGVPYSDV
VKNLHTYISLISGAGFSKHIELASLLNFHCPTETTLLAHLKSILPDLEKVATASCEANIQEILKHDSEYKFNVSLDCAWS
SKRDALHAVITLIDINTNKILDFRIVSRHPELIKFKSPKILVEPKISPGLMESYALRDMLKSDLWKKIKVFCSDGDVKDS
TMIENSGAQLSHVRDPNHVIKSAFSKIVTKYPKFEKIFRILFACPTLKPEQKVQRWMGLINRYPGESPEHIEKREIITNI
APLFLRISKQYHTNFNEAFNSLKAHLVPKNLRWIIGFPARIFVSVFAYNEDNWKTKLRRLMGIDDSYFDEDILQVILNFE
NKSDYDHIRRTSENYRNHNRCVHYIPDEIDPEFADLVPHKPSKDGSRSEKIEYTDDEDPPADEEPSESENLSLPTDYPKF
NKKSIFGSDIKVPPDWKRFSFFFKAKEIPDDPQEFQNLLSKFKQDLYNTYSSLIRINEENISAVAVYDSQQAKEIMNSAF
TDFHNFEKIKINAINYLNVLSHNPPSLEMIADFHPDLIQLPQTLRKTHDKPKKQKLGIKLGKNLSFLAVIVQLITFRPLM
HKLFDELFSNPNEQQLIYKEILSLTNRNFSENADVTYLYHLYSKRQKIHQADPIDAFKQLQESLACEARQLDLIDYFKKF
CWGFTDKIDIPLVNNNELQVTPTFSDYLFIDVAGFTFPLDDYTWNNNPAVKSKLVAIITYHSRQYNIIILDENINSWILF
CNTKISYIRDEELANNLNKGAYNTPKYLIFEKI
>Kolobok-4_TV_tp#DNA/Kolobok-T2 2723-4087  [Trichomonas vaginalis]
MPPPSRRKQQSREANEKSIEARKNSQEKNAPKEVDPKHWTASVIVNGDSYTRARNLFQDNNIKVPSEKEFYRHQKEIGKV
ILEYKEQSIKNAQQTMKKDTFLSTDSHYNVGRNATACQSLMMDNRGKVVGETTVIKKSSGGDFEGPSNMMETECTKRMMS
NFDFTNVSTVVHDNDNKTKAIIQQYAPNAKITLDPRHCVRAVGRAFEKLENGGYKEAAGKETVNQQKESESQPAFPIKSK
AEEPKKRGRPLKHQEKVFHQIYSKVIKWFTFIIMLPIETTKKIFLWKNTLNHFIGRHENCLHEKDKEYPVFQPLTKPDLA
KQFQRFTDDAAKLIPEIDPNAQTQQNESIHHSMLTQCPKGNNAKSFEMRTAVTILQKNEGEKCKQEIYNRVNNYQISPSI
RELQKLEYEKNKSRNQKKATPETRKEINKARNAKRFPKDNPTGDYRGGKWTPQDI
>MuDR1_OS#DNA/MuLE-MuDR 958-3666 [Oryza sativa]
MSSKVTFQIVHGEGNIRFGPDGVDLSDFVMTSKGIDRPAERTFQSIYSWLLRGFRIDQEVYTMSVSVVVSRATEGYFWEL
MPMDSTDAWRRYVEMAFERSWPLVIFVSVQEKDINVSMQTEDVEGPINAGDVVGPSMQNEENQPREEQAMGMADEGERVG
IIVDEMEREDSDNEEVDDDASSDEEGDVMATDWANEDFSGLVISEGDHVPWEYKENEVIEGARYAHKDEMKEAVKHWAVS
LQREFRVVKSTNYVYEVRCMKEDCPWRVHAYKGKWNDYWKVSIVTEHKCYLQGVEKYHRNITSAFVASEMYSSVVGNIGF
EPKSIIRHIENKFKYTISYAKAWRAKQKIIEMRYGTFEASYDNLPRLLATIAQRNNNTYYDLHTFTSVDDRTKSVLQRAF
FSLGACINAFVHCRPVLCIDGTFMTGKYRGQILTAIGCDGNNQVLPMAFAFVESENTESWYWFLERVHIAVVRMRPNVCL
IHDRHAGMLRAIDYLQNGWDEKGLPAKWPDVRSRWCMRHMGANFYKQFKNKHLMELFKRLCAQNQEKKFNELWDKLDELT
TKQTDEQSRRPLVEGDEPPIPLGALHDDPPTMRRRSGSSIRNFTQWIENEPKEKWSLLFDTDGSRYGIMTTNLAEVYNWV
MRGVRVLPLVAIVEFILHGTQAYFRDRYKKIGPSMADNNIVFGNVVTKYMEDKIKKARRHRVVAQGTQVHRYEIMCVDRS
RRGIYRKQAVQECVLKADGGCTCSCMKPKLHHLPCSHVLAAAGDCGISPNVYVSNYFRKEAIFHTWSEEIYGFGISGSYT
TLSAQVFYIPDPSKLRVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKCPKNAEVPSGADASPSGQASDGRRP
PGEGTTSRRARPRRRRAAGDSMV
>IS654_Bha#DNA/MuLE-MuDR IS654 gi|47076563|dbj|BAD18189.1| transposase of IS654 [Bacillus halodurans]
MSTSIGQSTFENQLDPMVREFVKEKLETIMKEEVESFFTHEHPELKNQKNGFYTRQLDTRYGRLENLRVPRDRQNAFQTE
LFSPYQRREEWLGEAIITMYQKGVSTREIGHFIEKILGHSYSASTISQVTDVVTEDITQWQQRPLKKRYSVLYLDGTYLK
LRREDVANEVVYLVVGVTEEGYREILGFYVGGQESANGWRNILLDLYRRGLEEVLLGVFDGLAGLEEAMKAVYPKADVQR
CVVHKVRNALHAVRKKDQPAVAQDFKPIYQANTYEEAKNRFKEFKENWQKRYPKVVATWEKDLDVLLTFLSYPSTIRPMI
YTTNIIERTMKEIKKRTKTMNSLPNEKAAEKIVYLQAIDYNERWATRRLRGFGEAYEALQEMFKQRYSGP
>MuDR2_OS#DNA/MuLE-MuDR 595-3336 [Oryza sativa]
MSSKLIFQLYHGQGNVRYGPTGVDLSEFIVTARGIDRPAERSVPSIKKWLMRGLGVDPQTSDITIYVVVSRATEGFYWEL
MPVQNSGMWRWYVENALQRGWPLAMVPYVHPKDPSVQMNMDDGEGPSAEVNEIEVDQVNAPEEDGVAPVVAPVGMQPGGV
ADEGETVGAIVDEMEKEDRDNERVEEDDSSDDDENNINPAEWASDDFSGLVISEGENVRWEYKENEIIEGARYGNGEDMK
EAVKHYAVSLHREFWVAKSNRTQYEVRCVNEKDGCPWRVHAYKGKWKDYWTVSVVTKHTCYLPGVQKYHRNITCAFVASE
MYAHVVDNLAYEPKSIIRHIEQTFKYTISYAKAWRAKQKIIEMRFGTYEASYDNLPRLLSVIQQRNPGTSCALKTFPSIE
HPGKTVLQRAFLALHACKMAFVHCRPVLCIDGTFLTGKYRGQILTAIGVDGNNQVLPLAFAFVESENTDSWYWFLHLVKT
EVVGMRPNVCLIHDRHAGMLRAIEELKFGSMERGYPGQWEDVQSRWCMRHMGANFFKQFKNKELMNMFKRLCNQNQEKKF
NELWKRLDELTGKCSDQRATRPAAAVPDPPQALGALPTDSVTLVRRTGEQIRKFSQWIENEPKEKWAKTYDTGGARYGIM
TTNLAEVYNWVMRGVRGLPLVGIVEFILHGTCKYFRERFQAVFPSMPNNNILFGTFMEKKLAEWRAKAMKHRALVQGTQQ
HRFEVLCQDKAGRGIYRKRVKQECVLKDDGTCHCSCRKPTLLHRPCTHVISAASECGIQDAVYVSQYFSKQAIYHTWSGE
IFGFGVAGEFTKINDPIIYIPDPTKLRDKAGRRKTRRIRNDMDESEAGRVKRCSKCDERGHTYKYCPKDKEKPSAAEAGL
SGSAADGARPTGEGTTSRRPRPRRSRGTTGYVV
>MuDR3_OS#DNA/MuLE-MuDR 658-3387 [Oryza sativa]
MSNKQIFQVYHGPGNVRYGPTGVDLSDFIVSERGIDRPAERSVPSIKGWLMRGLRVDPQTSDITINVIVSRATEGFYWEL
MPVQNSRVWRWYLENALQRGWPLALVPFVHPKDPGVQMNMDDGEGPSAEVNETSVEEVNAREDGGVVAPVGIQPGGVADE
GETVGAIVNEMEREDSDNERVEEGDSSDDETDINQAEWASEDFSGLIVSEEDSVRWEYKENEVIQGAIYSRAEDMKEAVK
HFAVSLHREFRVAKSNRSQYEVRCVKEKDGCPWRVHAYKGKWKDYWTVSVVTKHTCFLPGVQKYHRNITCAFVASEMYAH
VIDNLTYEPRSIIRHIEETYKYTISYAKAWRAKQKIIEMRFGTYEASYDNLPCLLGVIEERNPGSSYELKKFPSIEHPSK
SVLQRAFLALHACKMAFVNCRPVLCIDGTFLTGKYRGQILIAIGVDGNNQVLPLAFAFVESENTDSWYWFLKLVKTKVVG
MRPNVCLIHDRHAGILRAIEELQFGSMERGYPGVWEDVQSRWCMRHMGANFFKQFKNKELMNMFKRLCNQNQEKKFNELW
KRLDELTAKCSDQRAAAPSTAVADPPQALGPLPTDSPTLVRRTRLEIRKFSQWILHEPKEKWAKAYDTGGARYGIMTTNL
AEVYNWVMRGVRGLPLVGIVEFILHRTCRYFRDRFQAVLPSMPNNSILFGAFMQKKLEELRKKAMKHRAVVQGTQQHRFE
ILCQDKAGRGIYRKRVKQECVLKADGTCHCSCAEPKLLHRPCTHVIAAAAECGIPDAVYVSQYFSKQAIYHTWSGEIYGF
GIAGEFTETNDEVLNIPDPSKLRGKAGRRRTRRIHNDMDESEAGRVKRCRKCDEHGHTYKHCPKDKEKPSAAEAGLSGSA
ADVARPKGEGTTSTRPRPRHRRATSGYVV
>MuDR2x_AP#DNA/MuLE-MuDR 300-1220 Incomplete (upstream exon still missed) [Acyrthosiphon pisum]
FIIIYISTDFLIYDNGNEHRILIFATNGGLSFLSSSNMWFMDRTFKCSSIFAQLYIIRAEFEGNVRTCVYAFLPDKLENT
YHEMLLNLVIASVRNATPLKPERIIIDFELGVINVINRVFNDVQIQGCFFHLCQSVWRQIQQLGLAKLYKENERISKECR
VMTSLAFLPIDDILVEISHMYTTFSQELLPLISYFDRTYISGNNNNARYPPSIWNVRRQTMSNSHRTNNFSEGWNSSFNK
LVGTTNPSFWTVLRAIQLDECGNRLHKRQKSYTAGNNKLLHLCNKHQKKEITNMEFLNSIYYTCSF
>Hop#DNA/MuLE-MuDR 193-2703 RepBase name was MUDR1_FO. gi|30421204|gb|AAP31248.1| transposase [Fusarium oxysporum]
MDSIGIHRQFPDDALPPEGHYSSREELRSAINAWAAPRGYAFVIKRSSKTANGRTHVIFNCDRGAGRIPSLSDRRQTTTR
RTGCLFSVLAKESLCKTIWSLRHRPGPHFSQHNHEPSFSEVAHPTLRQLSRQEEITVNQLTNAGIAPKEIGSFLRITSNT
LATQQDIYNCIAKGRRDLSKGQSNIHALADQLNEEGFWNRICLDESSRVTAVLFAHPKSLEYLKTYPEVLILDSTYKTNR
FKMPLLDIVGVDACQRTFCIAFAFLSGEEEGDFTWALQALRSVYEDHNIGLPSVILTDRCLACMNAVSSCFPGSALFLCL
WHINKAVQSYCRPAFTRGKDNPQGLGGESEEWKEFFNFWHEIVASTTEDIYNERLEKFKKRYIPDYINEVGYILETWLDL
YKKSFVKAWVNTHLHFEQYATSRVEGIHSLIKLHLNHSQVDLFEAWRVIKLVLMNQLSQLEANQARQHISNPIRESRVLY
SNIRGWISHEALRKVETQRERLLKEVPVCTGVFTRTLGLPCAHSLQPLLKQNQPLLLNHFHSHWHLRRPGSPRFLIEPRK
QFDRLTASSTLPPTSTQREPSTFERIEKALQPKAPPKCSRCHQQGHMMTSKACPLRYKHLLQAPTQTSTIQAPTQDSTTT
HIITHTTTRSITRSLSPSSSSGSSIVSEIVAYTTTHTTHTTTRVLSPPAARPGTVPAANAIVVPALRADDPRAIFQRYKE
AREAWFTTLPRGAYKTNQQYRRAMGLPLRYSKAEYDWCLDYKQMGSHCKVGNGTRDWTKEEMMSYLDWDRAENDRVEQSV
EIEMAEQPFSRRRGMQDIWDAAERDIMLQESIFQGR
>CeMuDR2#DNA/MuLE-MuDR 1402-4702 viagenewise with CeMuDR1, 1 frameshift and 9 introns (1654:1994, 2122:2214, 2454:2737, 2865:3098, 3330:3374, 3547:3594. 3710:3766, 3851:4142, 4308:4350) [Caenorhabditis elegans]
NYRFTEADSVDPAVLHNLLNQNKLIVRIPLEENGGFPFDGHVWSKCDPKNRIKHTARYEKVTVFGVTVNSRQCIDFDNRN
FSRHLQNLSRGVPDAIIGNSGSNAATTLETIRELERLYGTRMNHAVEAIKIFLCSCPDMNVVQDWRRNVENICEMDGEMR
KRQLKDLLKTTPDGVFFYSRLHIDTTYNLGDAYVTVILGETMNFVWTLDVMTIRCDYHIFSLMSHKYGKPVATKSKPYVF
GTMVIFPWMICPLYHVLPECLCFRFHRKRKMFFECASAMAKLLGGHLRQFSTNNISENFNGYVKCKLHKQMTIDKLILKL
NEHCEDVIVQCFLSTIGQSARVSLKEDLSELSVEQRLQFLKNIGVTGELLSALNTXIPIQLLSEIEAEKSRHEADAAADV
VIYQRNDEIFNLRDDSINCSSRHASVEYDQGLLKCSKCNTVKLEYTCRHFLTVYKNNTNSDDDTGTANSRENLDQSLPDA
SMSDNFSPIFSSTMINGSRRSSRSRNSTKVMDPSPSDTNESDETSGNCDVFVNRTRLLFDDDGDDSTVTLFNNTEKTLQF
KCRIDSDEYSVKPTRGNIKPNMDKTMRVRVGDTAPGTTMHIFYTVKDEEEKSFKILLKYDP
>50878058_Dps#DNA/MuLE-MuDR gi|50878058|emb|CAG37914.1| probable transposase (partial length) [Desulfotalea psychrophila LSv54]
MDGNFDLKTPRDRDGSFTPQLIKKHQTTLSDALEQKIIALYGLGMSYRDISSHIEDMYGLEVSTGTLSTVTDKILHTVKE
WQARPLERVYPIVWLDAIHYKIREQGTVVSKAVYTILGLNIEGKKEVLGLTISDSEGAKFWLQVLTDLANRGVEDILIAC
VDGLKGFPEAIEVVFPQTEIQLCIVHQIRNSLKYVGSKNQKEFMVDLKRVYKATTKDLAESELDILEEKWNEKYPIVIKS
WRNNWERLSHYFKYPEDIRRIIYTTNTIEAVHGLVAQIEVASIAR
>Cmut1#DNA/MuLE-MuDR Candida from_retrobase gi|46440481|gb|EAK99787.1|  [Candida albicans SC5314]
KSVFFYKKNAYPSFSDPHCYGHEKRKRTGLDCYNYSFKNEKEFREWLEQRQLGCVWVRERKTPPKGSAYIKYQSYICNKS
RSYIQKSLNHQPNQNYAVNEDGAVNEDGAVNENNINNQKAVKKRNRKETIKTQYPAKIIAFQYEQDGKFYADWIYEHNHP
LTDSYYHNSRLRKDLTKELKIAIEQKTPIVEIINSMLDPIYKSCHRCNISDRNEIAALFKDYYPQSLDVYSYHLKNISSE
LFESKVKKGQTIKDSLLGWKNIIKTQYGGWAKFCNEYNTTNSKHHNVFSFQFCVDTQIQLLKNVHLFSLDATHGLVKSLN
GQSNAYLFVLTGIIPSSRNTFPLSFMLTNYTGKITIQHWLNNLKTEFGINPTQFVIDADPAEISGIQSIFKDTKIVLCYF
HVLRAVTIKLKEVVILPDKEQQKAIHDSITQDLKRILFNSENTENDIQKFLEKYASFRRFKSYFQKQWMSKINMWLRTEN
NTFDILLLTNNLTENFFSVLKTVILKNQPNKRLDSLVYVLVEIVIPRFWRKEFKVITGDEKPNTRGPEVSQKKQLDILED
EEIKELVKLNIINNSELFVVQSPHRSEMSYNVELNYQNKTGQCSCEMFTIEECSCIHTLAVYRYINIHKNFYREKIRGSP
QNAIPLCLRIEMFPLVGQKIGAYVAEELLEELDEEGELETSVSEIMNQLAASNESLEGCLPISSLLSSAIAIIDEASESS
NDEAPTILTSNHLDEIGSSYDPQFDDYVNDPDGFESRLQEAMAMSSSPIISDEENENQEISNSNFQNGENFFSREEGRSI
ESLPSSPPPSHNTSVSTSRDTSNTTSRNTQNTTANTTEYDPEIDEPIRESLDIYHSLLSIKRR
>CUMULE_p3#DNA/MuLE-MuDR 8675-9280 R) Perhaps part of a multy exon protein [Cucumis melo]
YLSFGLIFAFVCFSLQRILVSKWPLYKECIKENRPFDWDEEYRLVDYVVGSKVDFQDPWASVDYVYSPFNVHGNHWVLLC
LDLVSCQVKVWDSLPSLTTAEEMTNILLPIRQLVPKLLDSTGFFDRRGRSSTYKEPWPVVIVDPIPLQRNNCDCGVFAIK
YFEYIAAGVGLDTLCQENMSYFRKQLAFQVWTNQHSYVLKY
>CUMULE_p2#DNA/MuLE-MuDR 4534-5286  Perhaps part of a multy exon protein [Cucumis melo]
MAVPSEKYFPATVSCQVHKIGSLIKDKLTKDQLQMFEKTIFGPLLNVNMVFNGQLIHHFLLRQIPEDGNADGICFSVLGK
NVRFTQKEFNIITGLWPTNNPLEKDCDSKRLQSLLFGSENKKVITCLEIEEIFKNFEFTNDDDAVKVALAVFIETVMVGK
DKKTQFDMDILGRVDDEEAFKSFDWSTFFYTRLLNSLKTSLQGKKEAYELKKTRSSKAVSYYNIKGYVLAFQVIFISSYT
LSKCQLNIKV
>MuDR9x_AP#DNA/MuLE-MuDR 256-1757 via tfasty with MuDR1x_SM, via genewise with MuDR1x_SM#DNA/MuLE-MuDR, 1 intron (1524:1596), 2 frameshifts and 1 stopcodon. [Acyrthosiphon pisum]
MSTIFDSDNVCLTAKYRSCILRILYSFTVMSFKNIEYLILQKNKPLVKYDGFLYRKNCENGEVSYWRCVEVEKCRGRINI
KNYLVIKDSSFKHVHVPNPAKIKVKTLTEEMKKSALTTQHNPSKIISDIVITASSNVNQGNLTSVFNLKRIIQRTRQRNQ
RSPPNPLTLKDLGEILRHGDMYKQTNNGSKFLLFDNYEINGPTKNRILIFCTSEGLKLMSESEHYWFANGTFKSAPSIFT
QIYAIHVLKYNTVILVVFALLRDKSTATYSYLIKTLKSHIPLNPKTIMTDFEQSAILAFKENFPNVTSRGCHFHSIQCVW
QKIQSITTIHEKYITDAECCIQIRLLPALAYLPAYDVIAGFEHLCESDYYIEHEELFRSLLDYFEDTWLGKTVHKRRRGP
TFSLEMXNCYDLIDLPKTNNSVEGWNRGFNYLLGSCHPTLWKLVEGFKQEQTNTEMKVEQYISGQKPIKKKYIKILH
>MuDR-4_EPa#DNA/MuLE-MuDR 1044-3537 via tfasty with Vandal17_tp, 1 frameshift. [Eutrema parvulum]
MSSIVNIHFDYGGSYSKTRGEDIWNSEGHIYGLSFKTSIEEITYSMLKGRVCRKIGIDESTTKLKFSYIPLVVKPPRQSD
IFDDEDVYVYLTSVDKELCRSVLHVEVIKDFGIDQWGEQLSRVGRGSSFGVNYSEVPSGDDVNAGAVTLYVGNQAAEQHV
DPMAVIAGGENVSFDEFETVDDMNNYVENSLDSSGMPDEYVEHRVDTQDSQFKPAWEDGLGLEIGQEFGSKKAVQDLVDR
AAFQNCFGFAVAKSDKSLLVLKCRQVGCDWYLRAGKIKNSDCFSVRVHRKMHTCSRSTASTSNHKRKGTPRLVASVLHED
YPGQFATPTPKSIISLVQGRLGVKVSYSTALRGKKRAVRDVRGSPEENYQLLHSYLYMLEKVNPGTKTSVVVDEAKKFKY
LFVALGASVEGFQAMRKVIIVDATFIKTVYGGVLIFATAQDPNRHHYPIAFGVLDGEKDASWKWFFNMLKTIVPDSPELV
FTTDRNPSLIKAIREVYPIAKHGYCLWHLSQNVRNRVSNVNKDVIAEKFRECGKIYTEVEFMRVYGDFRRRYPSAAEYLD
ESVEVEKWARCYFPGEMYNIDTTNAAESMNSVFNAARKYSLLPMIDSIIEKMGEWFNVHRKDSVCGSDTHKLVPFVENLM
HSRCQKASVLPVTELNTFELEYSVNGGDGKCYLVNLLKKSCSCRCFDIDRYPCKHVIAAVIEFMKHEDRGRDIHIPDLCS
RYYWIEQWALAYYKTIYPVPAMCDWLIPEEIQAMKILPPDYTKKKGRNKEKRFPSAGERRRKTSNKTWVAGLSRSRVNLN
LCVNLYFFNIMFFVQLGTTGFCNGTTKFFKI
>MuDR-3_SBi_p2#DNA/MuLE-MuDR 4287-6469 via genewise with MuDR-12_SBi_p2, 3 introns (4409:4501, 4888:4970, 5566:5991) [Sorghum bicolor]
MRYDDRYTPLLQRAGLDVISYQVRRGLPPINPAAITALVDRWRPETHSFHLPCGEMTVTLQDTQKILGLSVRGRPVIGHC
RPDGWRARVEAFLGRPLPPEAPTQRTTGVPIAWLRQSFGNCPAHADQETVAYYCRAWILHLFGCVLFPDATGDTASWMYL
PCLTDWDTTGTYSWASGVLAYLYRSLCEACRRTASSSSVGGCVYLLQLWMWARLPVGRPIVDAPREWFAVGNPRHRPTFA
HLWDQAKVAFSRTSRAYVQYANELDTLRPSMVSKMQXFLFIVCSIVCLTCHIHVLCLQVNWEPYTANDALHLGVSSMCSE
DEDLYLMICPLICFYAVEWHLPNRVARQFGLCQQWPVPPFDTSVELHNFRINVVKSVLLFSSLIFNFRIDRQKQKKTVEF
ZTLHRQYIEVWDQFHDNLYENEQPHTNYNFRAYLTWYLGVTRTRLKIQWTQADYAYLESSEDEDTSYDLAARQGTLIEAA
PVLDRVVHVLSTIQLYDCCPFHFINCTYINYYMSYLIGQRNKAICT
>MuDR-5_TV#DNA/MuLE-MuDR 877-2319 [Trichomonas vaginalis]
MQIQDHELTYIELLKYGVQQEIQAGCSYSYKTRKERNQIQFNCKWPNCPCRFLVDTLPDDKYHIRKCINTHNHSAPFPNK
SQQITSYFYRSYLTRYFESNQDRVYAQLRCFKDLNIPFDSGIIPEMFQQSTDALKKFSKRLHAINTRFSADDVTSLAIFV
DMVKSHSPDDLIEFIHEPDRMIFYYAPFEANAFSHQIQTYHIDSTYKLLRSRIPFYAVTGKFAESIVFPFLYFFVWPDTS
ENIQVCLTAYFGSINREPSYFSMDCAPQITNAVETAIPLCQIIWCGVHVLRAVMRKAEKFQDRSNFETFYNLMKLLVFGS
EEEEIDPDEVYNNLEEILNEEPAAREYFDRQWRHHLDRWMLRYRNEGDGTNNISESHFKVLKHQYFPERRNLRLDELVIE
LYSSVVPSFLIKLQIKGLDSERSVKVIKKVTRDFEEMTQFKKVECISMLEAVQKGLKNDTLDPNIVYSTLKILLQRKHLI
>MuDR-6_ZM_p1#DNA/MuLE-MuDR 1056-3806 via tfasty with MuDR1_ZM_p1, 1 stopcodon [Zea mays]
MDNFLSLYHGGNVEQDPYGNAKFIDMRHVPVLFDGRPSLRDVFTKAKQKLGYHEADDIAVDGVLNIGHPPNVIRRVIPID
CQLDWDNYITSAMKTHLQLMEVVVRPVVVDRPPEDFDRAIDDVPTVPDAQSGPNLIPLSQPGDGLQTDLAACIPLAQTNC
SKSYWHYIFILDHEHFAHSIxRGTDHLVHVAGETPTLVVDPQTEARGCFGDGFIASNSPEFRNEEEPYAFAMAADSDDDR
PVGELTESDIEMLQRVFPDGRDPRVHEFSDLSLSHQANAEGRDDELLDAPEAGPSMMIEKGRVFKDLTALKRWLQHYAVL
RKRPYRVLHSYEKRRYTVVCDKDNCSWRVCARIQKITAKWKITKVVGPHTCAEHELTMKHRQLTSTLIGKRLMGILQSEP
NMKVRTIMRIVENVFDGYKITYGKAWRAKQCAWKMIYGDWESGYEQLPVLLNAMKAVNPGMHYEYIPKPNAWIDGRQIFF
RAFWCFPQCVDAFRHCRPVFSIDGTFLLGKYQGTLLIAISVDANNKLVPLAFALVEKENKDSWGWFLRLVRIHVVGPGRE
VGVISDRHQGILNAVREQIDGYPPLHHRWCTRHLAENLLRKDGVKDNFELFQETCRQLEDKFFREKLEKLKVATNAEGRD
WLNGLMPDLEKWTRAHDLGGWRYEFQCSNMAESFNKLLLGIRGMPVTAIVTFTFYKLVAWFNDRHTHAVGLQNEGERWAP
KPKTFLEKAKERANTHTVDCFDLQSGTYEVFLQAGTTSDGESQESRKHVVVLNDLSCTCGAPRQYHFPCSHLIAAARARN
FDLERRIPQEFTIDKLVLTWSPRFIPYRDAGEWPPYDGPKYVADPSSRWTKRGSRKRTRHKMVMDQVGGRSRRGRRTPFL
TDPEQYECGKCGRLGHNSRTCRWQISEVCIFSLMILP
>MuDR-6_TV#DNA/MuLE-MuDR 876-2324 [Trichomonas vaginalis]
MELEEETIFTVMDLCKFGVKQEIQAQYGYGERVRKERSQISFHCKYPKCPAHFNVAILDQNKYKLIKIVEEHDHSAPNDK
SQYSSVFYRKYLEHYFQTDDNQRAIAQLNAFKDLEIPLTGPSIPEMYAQKPRAIKRFAERIHALQTRYSPDDVVSLQIFV
QTVQEESPDDLIAFEVSDNNMCFYYAPFEGKAYAHSIKTFHIDSTYKLLRSNIPLYAFTGKIKDFHIFPFLYFFCQPDTY
QNIQVCVCAYLRWVTIEPEYISMDCAPQIAQAIEESIPQAQILWCGVHVLRAILRKSNKFSSQEKFEQFYNLMKDLVFKL
DAEHEEEANAAYDQVLELLDTDPTASQYFNRQWRYNISRWIARDRREGDATNNIAEAHFRTLKHDYFPDRKNLRIDDVII
EIYTKVIPSFVIKLKIDQNPADDRVIRIMEKATNAEIDVKRQRKIESISMLNRLLNAVSDDSIDPTKIYPTLKVLLQRTH
FI
>MuDR-3_Mad#DNA/MuLE-MuDR 699-2991 via genewise with MUJITOS2#DNA/MuLE-MuDR, 1 intron (2022:2119) and 1 frameshift [Malus x domestica]
MEHQDDEFHTPSSSDAKESVDCIHLDSDSDSETFEVLDQNEEKGEFTSKVGDISLGMTFDNEDDAYNYYNAYGRRVGFSV
RKNRENKDRSGVLKKKQFCCSCEGFYKKKKKEXKKKREETRCGCKAMLEIKLNLERKFVVTNFVAEHSHVLVPASSSHLL
RSQRLIEPSQAKLIDQMHxAGLQPSQIFSYFTTEAGGSQKLNFIQSDCNNLIMRKRIGVLKKGDSECLLEYFKKKQTEDK
SFFYSLRTNEENEICGCFFCDGNSRRDYTIFGDVVCFDTTFKTNRYNMVCAPIVGINNHGQTILFGCGLLDGETTDACEW
LFKAFLQAMDGKAPGTIFTDQAQSIAAAISEVFPNCHHRLCLWHIYQNAARNLNHVFSEFKSFTQDFKRCIYDPETVEEF
ESSWNKLLDDYELRGNDWLEGIYLLREKWAQVYGRDHFCAGMTTTQRIESMNKFLKKYFARNLLLQEFVVQYDKAVADRK
EKERQAENATKQKWRSLYSDWNVEIEATKQYTSKIFYCFQEEVKKVLNLRPLKLESDDGxTRTYTVMNSGKRGINRTLMY
DLANQTVLCSCKKFEFEGILCAHALKLYYDLDLSSIPSNYYLKRWSKDAKCGIGFDSYGEPAVSNLDSSSLVQYSELSNI
AQRIIAKGAKNSQNCSFLKSELLKLEKKMEKHANFGEQDDVNYVKHVTEAEKNLKIQDPKVQKSKGRGKGRMKSALESNQ
PKKKGPYKRKG
>MuDR-1_DPu#DNA/MuLE-MuDR 329-3537 via genscan, 4 introns (1663:1720, 2096:2197, 2678:2746, 3149:3207) [Daphnia pulex]
MAFKSKRQVAAERVIRLCEKLLNTEPVVNVIINPCAGVEYVYEPAEEKQIKDGNGDERNAKEHSHGNAKTEKKRAENFIP
TRNSTKEKLKKSSGYPINVYREECADGPADLQEQAVALPRDVIQVRNFQKNEKRKMAITQDTNYNLQEIADDTKFIREII
SYPDVAIFMYHPQLWQLFIGLLNRKDLPYITLSVDTTFEMTDGYVTVSVARFVEFNECPVFPLATMIHERKLGETHRFFW
QKVTQHFPQLVTASNIYIVSDEEEAIVGGVKEFMPHTDAYRCWNHIITNAKLKLKRLNITAKNEVSKYVDDIFFLLNQEE
EKSYYKELSVINADPERWDPGFKKYFMDHINSKVDRAGRWIIKKHNLSSVTTNISESFNCLMKRFMDWTDRPIDVLCVAF
YRLAKTFVMEFIRSRYRKGNYTIRSSVSHLYNIRDNPPDPAMLEKVEKEREIFDRLRRVREEQKKSTAEVQIKEEGIEKQ
VIEDHEFTTWERAQHVVSNDLIKLDVKTHVFIVVGSAENRLVTLCPKITCTCPATTVCYHVLAAHLAIGDCHPSVTKKPK
NSTRYRKRAKKTADKRSGNKAPRKLDIDRPPVTSPSTPLPTKRKKSAKSSSNTAPDICTSPKKRKVSVVTRNGTHIPESS
TDFSDVTLPSETDSDDDPVLENSSSPFHDHRGRSDVIKRVSTESPKKCIGGQVVTNAMLEEILQMEETVTLTVYRIIPID
AIHINDISTESITGTAVAIIHRENDLEGDASTDASDSIPNAEVQFLAASLATSEIDYRQTWQLAAEEINEIKRSTKLTTR
HINSALALVRKNFPEIGGLFNVHHATSTGTYPVPKEKRWIQIIHTGKCHWVLAVSGFPVCRNHNVAVAT
>MuDR10x_AP#DNA/MuLE-MuDR 399-1805 via tfasty with MuDR4x_AP, 2 frameshifts and 2 stopcodons. [Acyrthosiphon pisum]
MEVKLIKSNRGEDILEYDNQTFYFAYKTKTTNIIRWRCTQRKCSAKLFTTGENLMIVRDESVHVNHDEKNLNVINKSQLC
KIKARESPYEKPAKILRNVVQNSTDSNVITTKDISDLRRNIYNTKRKILPTFPVSQNEVHSMLGTMDIKTHTGEPFILSN
DSDKNIIIFSCKTNIDFLCKSETIYLDGTFDYCPKLFTQLFTLHGYFNNNYVPLVFALLPNKTKQTYKHFLNILVLVCQN
VGLILKPTTVICDFEESIHIALREVWNNVNIFGCRFHLTQSWYRKIQNLGLCKAYKNNKTPEGEWLNNIFGLIFLNPNEV
GSCFVDDFMSTIPHDIKFQMFADxLVDYNYVDNNSLFPPYIWAVDTYKYTTNACESFHSKFNAEFYHPHPQVFNFIKVLT
DFQTDTYIKLSSxHITPRITSQTCQRTKQIQAALDQYNNKLISRTSFIALVAYKYKKRISIKTAKYNSN
>MuDR-1_PPa#DNA/MuLE-MuDR 351-2316 via tfasty with Hop, 3 frameshifts and 5 stopcodons. [Physcomitrella patens]
MCAPLEGYFESIEEMKRSIDEFTHNQGYVVCKxHSDKDCIDYKCDKGAGLLxSKLSYSQTKxCKSSDRCPFALHACHLHN
STQWHLIVRNALHNHGATSFLLGHLFACCLQPAKKELTSQLLATGIPPKNVVVALYESDTNSKVIAQIIYNExQKLRCIA
LARQSPIICLMETLQGANYHFTYHCDEEDKVTCLFFAHFNCVQLAKRYHFSIVMDCTYKTNRFRMPMLHVIGMTSFNTSF
IIGVAFFQEETKSFFCWTLIQLQQVYGEIxPICIGVDRDLALINAIELIFLTSNILLCIWHIQKNMLANYKKYFSNKVEL
GWSSFLADWTIVISACSVELFDLEWTNLCNKYIPTIAHAAIEYLKNTWIPHKKRFVKAWTNNLLHLRSVTTSQVEGQHSA
LKSYLKVSTKDLREVQISLLLFWNTTRELKAQESSKQIHIAHQHNIGFFTNVVKHVSLHALNLVLEQYKQARAKIDEHNF
SCTRTMTNTLGLLYKHQIRILLRRRDVLSISDFHHQYYLVNTLDQFIPIPPTIPFSFESLCLLYVAVSQTFDVLLLHQQE
NLHKRLVELSTIIVQLKNLQVSCPKERPQGARNRTRSDMHAKTSTQRSASQFETIEARTRRHFCSNCKSMGHNICTCPTR
TTFSSQLSTNNIQTE
>MuDR-2_TV#DNA/MuLE-MuDR 1205-2884 [Trichomonas vaginalis]
MQHPPPDPPCEVDQAIGYLEYSRFVIAAELHGNIRFVKDPQKLSIGTGVLIYHRCEYEGCPAGFKFIKNFDNYIFKSANL
THIHSGPPPQHKNTPTSGTYRAWIKKFLMNHGSPLNATQEVNKTLEIPKDHTCIHMTMKQTAINQLKYYLQQKDLMRSLP
DISLNQFQSLQNYVNQWEDQHDDLIYFDIQGEDTDFPDKLVFIYSDNDMISQIHEKPPIYHLDSTFKLIIHGFPFYVLAT
KFANTHSIPLCYFIIYPDNSENISFCLSKYFETTHTEPEFIMSDCALNIFNGIRNSFPECNIFWCALHVIRALKKNLSKI
NDEEIRSEVEKFMNILCYYRDCTEEDAAKMYKEHIIDKIQDQLEFNQYFTRQWDIHKQQWIAAARPNELTVVNNVSESLF
KKIKYHDFGCVKNQRIDVFVKNLLEEVAPNYFYRIKNDLLQTGFIPSIRIREPRLTDYKTKLKREVQSRLYQVLNFVQNQ
EANLNPLRFLLENAEEKLSQINEKIQNSITYLRSFEIPNELLDTYMLEINEFCYNSPGYILEHFEEFLEDFKEKNNLID
>MuDR-2_PTc#DNA/MuLE-MuDR 209-3115 [Phaeodactylum tricornutum]
MDCSLKQLLDNNIASKKEWMTECIPFPSKEGQEVNLCDYIGLDCKRIGECFMFPEGYDSTSNCRNSLAKAIKIAAANGKF
PLVERGWDAKKRRLRFECFRSRSHDADRYKXKQNSLSNVAIKHRNVSFIRPQKGKECPFRFSIFWMTEHKRWCLFGGVKG
SCRFHCHHLPMDPCEVKKSISYIDGGEVKIALDAAKSNAPPSVIGRLLNIRTGDILSGSSLKNIRMQAEKGERNKFGAND
NFTTQADQLLAYLESTPDVSFCAIYDEPDSPLFTVYKQRAKTGRRHLHTSTRSISGGIAQQEVLNEKVLDAIDPRGELDD
YIDRTRRAFKLKGNEKMLLGVAWTDNESRRIFARYSEIMVADVTEGTNNAKRPLFLFSGKTSNQNTFTALWAFLPQQSRW
AFRWVWTRCIPQLLPEQGLNRMRLLITDGDPREYGTFLDAIPTWYSLCRHKLCHWHLLYRGSLMKAQTGNCGTKAKILFH
VVLKWIESWMTKIETQEEYNLSTGLLIDWLKSPEALDTNLGGMGCALVSQINAFLTSSLFPHEQRWARYHFLNVRAFNTS
ASSYGEAENSALKRRGDGVKPNFSVPKATRAINEGTQLRTVKRQQKAVHNLNATKKTKAANYTNISDLVDCIQETISHEF
NAAKKYDLFCPGPKEFWVKRAWYQIPSETYQDFNDSNFCQFMIPQFERTRIVKITEIEGELYLECSCGKFQRQASPCAHI
YKVLNRPPQSTDVSVRWTKIWDVYLHRPGYHDLSDQLEELYKKERPGPHFENTNQWEVGKGEREYNYFKRSLPSEPTIIQ
KYSRWADSFSRQPGCYVHKSTEQETVPAASGMVQELTSLSQGYAIETQLDSEMDVGDVTVMQVEEIDSNLSKSGKSPYTN
NLHFYEEISKLAKFNSKAADIMTKGMQETLELLQKHVAEGSGMVDYSIGPAIGKEPVGQRLRPSYSPSKSKNLRDRQKET
KAKFWWLNK
>MuDRF-1_PGr#DNA/MuLE-F 965-5500 Via genscan, 5 introns (1589:1777, 2026:2093, 2280:2364, 2875:2942, 3195:3271) [Puccinia graminis]
MPSKKTAGATAKEAKEKKDEKEKKDEKKEKENIPWMISSSEKQTDNNRIEKSEGFEDEEVAEEEVDHLDQSDHGPDHDRE
EDSRSEDGHPEANIADSDDTDAVRDPQGNAKEWFLPNLEDTFETYIDHGCILDKQGYPIYPNGKTIFVRKPGETVTNFGT
VGFSKTSSSNKRGINNDWKVVCYFCLGALVCDDPSCQWAGPPPNRKRWKTKCPGKSGKCKGNVTHKKCCRNSVAVRFDYH
LPTGWGLLRHKGTHPHPWPEAKKPDPMSKDELKAEILKNPSAGALKLKTGKRTDPAAGANSVTEIHPAYINKDRLAYYRR
KMLVELNLVPDKLGGGIGDKFVLDMFAWAARGLLITSASFLPQNEHFTFQTQWMADRLLARDENNQVYSGGLISDVTYRY
FETGYLLSTSMYCEDLHRWIPIQLTWIRGLSEEYYKLHFTTLFRQFQAAPVTPAERDTLVRQVVDFSSAQAEGFVSAYLE
VFRQGTRKEVRRMLKGCREHFRQSVTRIKRNRALMTADEEEPFRKACMDLLEHQEAGGKTHEEKVDFIRRRYPKVRKWLD
WWTVSDIEALLFPSRQPRLEDTPDGLPDTTNAQESMHRIYYRLSDGKQCIMVGMVDLFSFVKMLEEDWKAAMKGIPISYG
ANPTTDIGTTLGIAKKRKRGEGKFINDGRPPDTTDELVDGKKKKKAKLGRPPNSTNFNKSLWSAYPSYHANKDNPTRRNR
CWLAAGLESLYALFSPLWLRGISGHGKDVFTAIAHHFSCRSTGELNGSNAIRSTLTRGQNMVFDVLSPKYPGRFLPGAFA
SCDYFLEVALDPQLHKKDEYKQLFSIDEHRTFTCELQPNKLQKHPTRDHRTLHVLTIKPQMFDENRIPHSDVSKLIEMWQ
TDGLLATSGMICKHCNPNKPKPKLPKNAKIQKVSSDVDIVKLLGSSENTSHHIIDRSRLAVPANGAPLHLNFYVDVTGIT
DEKQKNNFMGSIDWPFKINVGGATYTLISRGYWQHNHYWCKVLRSANISADKGSLTAIWLHNDAENDGYAQQINRVPSSI
AGVEENTSWLLYSRDWTPSEEEYVNNAIQKIVAENPEAAGDVPFKEMKSILTTSHSSTLIPHTTTNEVKSTPPTTVTSQA
REKSPSTTTGNAPKNYTSPVKGTTPIAQLASQMNAQIARKYALDQKEPDTKQQCSLDAEVTLEIDESFLSVGDKSHGDQS
FVLGDQSRGESHGDQSFVLGDQSLESHGDQSCGEDGNKDGGDQTFSLGDHTGEDGGDQTFSLGDHTGEDGGDQSFALGEQ
SLGNQTGNQSLADETDDHVTQTQVKHSQEDEEVPQKPPIRFKVILRPPEQRSPPSTKGKTQASRRS
>55240967_Aga#DNA/Merlin gi|55240967|gb|EAL40575.1| ENSANGP00000026120 [Anopheles gambiae str. PEST]
CALETGLSHNTVLSWYDTIRSFLWETFDRTREKIGGPGMTVEIDETVITRRKYNVGRVGSSGPQWLVGGICRENKAIFLE
RVPKRSLAVLSDLVVRHVEPGTKIMTDLWKGYNGLEELGYPHECVNHSRNFLNPDDNNINTQRIENVWRWLKAFLRKQGT
NIKSNMDK
>549115_Cdi#DNA/MuLE-MuDR gi|549115|sp|P35879|TRA_CORDI Probable transposase for insertion sequence element [Corynebacterium diphtheriae]
MPRDRAGTFTPRMLPKGTRRLTELDDMIISLYAGGMTVRDIQHHLATTLSMDMSPDTISTITDAVLEEVMIWQNRQLDEF
YPVIFLDALRVKIRDGHRVVNKSCYMAVGVDMDGIKHILGLWIADNEGASFWASVCADLANRGVQDAFIVCCDGLKGLPE
AVEATWPNSMVQTCIVHLIRAANRWVSYQDRKPVSSALREVYTAPTEDTARAALDAFEASELGRKYPQSVKVWRDAWDRF
VPFLQFPPAARRVLYTTNSIESLNAELRKATRNRGQFPNDTAALKTLWLMICNIEDKRAAQRAKKAKRAIECNGYIEGAK
ATGWKQAINQLAVAYPDRFADYL
>17544214_Cel#DNA/MuLE-MuDR gi|17544214|ref|NP_502868.1| predicted CDS, C2H2 type zinc finger containing protein family member (4Q281) [Caenorhabditis elegans]
MASYILCDKCDYKSTLLNNVTRHLGSIHNATDEDIKEFKKQLALSRSVDRNGGVAWECTTCGLTLPSKNGLVTHRRRKHP
KVTNLPDAPVDPATISLEDDIIVLPPPPTAIQPPPAKKICVSASEHRSVTLRQQSAAPRNKSKNADENSAKGTVLCPVED
CGSNFATRLELAQHFSEFHEPESEVEYTNFQTTVEFQHYGHEKRPGFRLLNEQEISKLVRFMKDGFSNVQIIRKCDKEYD
LTSRLANIVPSDLRYLRKKYNLAEGRLDENDFISLQKRVDRNWPEDGIRFFSPPRDDGAVVMTPDQKELCERYGNDGICI
DDTHNPSKYNLKLTTMLVVNGHGRGIPVAYMISSTVTQEDVKQLFECIVKEIPDFHPQYFMSDEAHAFWNGYNCVLKNHK
TQRLWCIWHVQRALFENADKLLPKCEAETVKGTLTSMMGEPTKAKYENLLATLLEHLENDCENGKQYADYFRRNYDKLWA
GCFRRGAPFQTSMFSESWHAALKKEHLQLHTNIRIDALLKVLYDAFEWVVRKLAKQSGRCLKTASARKAQNLRNCAKAKL
QAEDYILSQNEKGDFEIEAKASGKVYTVEDLLGCSCAKDENCHCSCGACWTRFLCTCPGQKSGVSCKHVHMAIASGHLLE
NETNTPATDRDDMDMEPFQNIPLPAPHQPFNAPSTMGFTYEAEKLYNEFMQENDVLCRKMRQYKKSSSAESLETMRKNLE
IVREANKNTPGTSQVLTVRRDAHLPYRTATQTMNRIVRRKKGDRKRSNKLLASSLPPKKDVSICSKCHFADPVLDSDIHE
TDFESIVTEWLRCSTCKLPVHFVCSHDGCPSCGGTLESYLPDEVDTQNSSSEDDDQEEGDEENLTIRLVSSRAG
>1617569_Rop#DNA/MuLE-MuDR gi|1617569|gb|AAB57888.1| putative transposase [Rhodococcus opacus]
MTHDHSALIAQLDGLKGADSASVFAELIRAGMQALIDAEATEALGAGRYERAEGRTTYRNGSRAKTVATTSGDVELKIPK
LRSGSFFPSLLERRRRIDRALHAVIMEAYVHGVSTRNVDDLVGALGVGSGISKSEVSRICGQLDTEIGRFRDRTLTHTTF
PYVFLDATYCKVRVGAHVVSHALVVATGVSMDGTREVLGTAVGDSESFDFWREFLAGLRARGLCGVHLVISDAHAGLKAA
VAQQFTGSSWQRCRVHFMRNLQSAVHSKHAPAVMAAVKTVFAHTDPDEVAAQWDQVTDTLAGSFPKVSSMMREAKCDVLA
FSGFPRSHWQKIWSNNPIERLNKEIKRRADVVEIFPNPASFLRLATAVVIEAHDEWQVTRRYVSDVSMDELRTVIVAKER
AAAQHATAESLTAELETA
>54303052_Ppr#DNA/Merlin gi|54303052|ref|YP_133045.1| hypothetical protein PBPRB1378 [Photobacterium profundum SS9]
MTTRNTYECSQCHKQTSITADTLFHGSRIPLTKWFWAIYFLGSDKGSISALRLSKLIEVNWRTARLILSKLRTAMGHRDS
LYRLSGVIEIDDALVGGRRKGKRGRGAEGKTPVIVAVESKGKRAGFIAMQAVDSVCHDTVNKFVAKHLNEQQEVHTDALP
ALNIIDNTQQHEAKVTPSELVDEWLPWVHIAIGNLKTFLLGTFHGVSGQYLQEYLDEFCYRFNRRKMEREIPNRLLNLAI
IHAPIHSY
>Polinton-7_NVi_polb#DNA/Maverick 1135-5347, first 150 AA not seen in other polinton polbs. Via genewise with Polinton-1_NVi_polb, 1 intron (2811:2886) [Nasonia vitripennis] [Nasonia vitripennis]
MASIDFFERLVQXLRDTLQNVDQMSNNDIHYWLDMCNSTIKELNEKIXKSNLTRGEKQKCQTCLTHLSCMQVEFEQHLHR
GGSLQAEETEARVEWRDVQSAFQNRIRTGVVVNIKHVDILSFLNDAQKLFKVKTKXCLXEYNAVKINSDFIAEFSMQKNG
EETTDIKYFTSESATVYLSTDLEEWFKDNIKEPILSQLEEFQEKDSGWTLKSIISLCINMKKYSPIKGSSYIPLPKFIEK
KKACVNVXNNDNQCFKYAILSALYPSKSNANRVNQYRLHENELNFGDIEFPVKLKNIPKFEKLNNISVNVYMLRKYGPKF
EVSPCHITSEKKEKHVNLLIIQDFYIDEHEENNRADDGILPKYHYVWIKSMSRLLSSQLSKTHIKSYHCERCLQIFYSEE
RLEIHENDCKNLNNCRINLPDSKNNILKFEDYSKSEKVPFVIYADFECLLKPTENENAFQLHEAYSIGYYIKCSFDDSLS
GYRSYRRKNEEEETAAAWFVQELKSIGEKIDVLYKNPKPMRLTDLEEISFRRSTTCHICRKPIXGEELAVRDHCHLTGRF
RGAAHNSCNLNYKDSRFIPVVFHNLNYDTHFILKEIATSTLMKGRVTLIPHNKEKYISFTKYIDDCDISFRFIDSWRFLP
SSLEKLASYLENVPIAVKEFRSDGFTDEKIDLLRRKGVFPYDFVNGLDKLTTTKLPEKNDFYNKLTDSHIAEEDYKHAVQ
VWDKFNISTLGEYSDLYLKTDVLLLADVFESFRETSLKAYDLCPAHFYTTPGLTFSAALKMTKVELELLTDIDMLMFIES
GIRGGISQCCNRYAKANNPYMGSSYDKDQKTKTLLYFDINNLYGWAMVQPLPVGKFKWIEYETNPSFFNTPPDSDIGYFA
EVDLEYPEEIHDDHRDLPFCAEHLAPPGSKQKKLLTTLNDKKRYVIHYRALKQVLDNGLRLKKVHRILSFEQRAWLKPYV
EFNTEKRKQAKNEFEKLFYKLLINAVYGKCIERERKRVDVRLVNKFTGRYGAEARIALPNFHSCAIFDENLVAIQLKRTS
ITIKKPIYVGLSILDLSKTLVYDFHYSYMKKRVGEKCKLLYTDTDSLIYEVEDVDMYQVMKEDIHKFDTSDYDENNQFGI
PRVNKKVPGLMKDECCGKIMTEFIGLRSKMYSILIDGAETVKKAKGIKSSVVKKSITFEDYRKCLQDLVIIKREQCNIRS
KLHIVHTEKQEKIALSPHDDKRFLLPHSTDTLPWGHYRIMEEQMAQAAMQVEGDAEEGIVVEERGNNDEGRKREGESERG
HEATNENASRVGMTLYGDEGEQIRIEYDVLEEFMHEWDPSLDRIGSEQEERRDILLEAMEGAEIVVGNGLYERTQHDEEH
IREIEANNQPCAKRPRLT
>Polinton-5_NVi_px#DNA/Maverick 12058-12851 via tfasty with Polinton-2_NVi_px, 1 frameshift. [Nasonia vitripennis]
MDQNDFYLVLPSNSSMMYYNENATSCFTTQLSRELRLSGNWSVALVEIHVPSTVTHIQESDAFYTFKQSENAKQETHFFR
TGIYDKIEQLANEINKSAAFHDHLRLEVAPFQKGYYMLQRKCACVDQHQTTFNEKICRIFGFEDSETRRKNGTFVTSSMG
SVVALGNRPASLSRAIPDQLYVYTDVCEPHTVGDTQAALLRIVSVDSAKYKFGSNIVRHFAPAHYIPLLHHSFRSIVIDI
RDQHGVRIPFEYGTLTVTLHFKRNR
>39582767_Cbr#DNA/Merlin gi|39582767|emb|CAE74230.1| Hypothetical protein CBG21915  (chimaera of 39587291 and 39582767) [Caenorhabditis briggsae]
MTAVAAILDLKSFNLIKTWPELANKTDDEFDEYLAERGLLWRENPCPSCHESRKISKQKNASGAFCKQKFECYKRACRNS
RFNCKTGYLKGTFFEGLRGSRKKIFLCSFLYLNGKMVMKELAETLETEEKTVIQWCQWFRDIMAESLYQPAIMIGGVGET
VQIDETNIVKRKYNVGRIVRNGWLIGGIQNNTRAVFIEIVDKRDQATCERIIQQYVAPGTTVITDCWRGYNGLAALGYDH
KTVNHSQNFVDPATGLHTQRVESLWSHLKRRIKPKCGLKGDLWDDHWFEALWHFKHHEEAKLYELWAEIARRYPLT
>54302505_Ppr#DNA/Merlin gi|54302505|ref|YP_132498.1| hypothetical protein PBPRB0826 [Photobacterium profundum SS9]
MINILNTAKAVFCFSLIFCVTVSYRVFCYLQHGMYIYPSYLKMLVSARICWALGKALIWLCSIKMLTTLISVVNSLKVKA
MRAKTFTYRLKYITQLLLDMTPAQREQVKLNIQSIQPEITVGDIIQPIFDISPQCPHCHSLHFNKWGKSGSVQRYRCKEC
AKTFNIKTKTPLAKLHKCDLWLQYAECMELKLPLRQAAKICNINLKTAFLWRHRFLEAQSEQYKDKLSGIIEVDEFFLAY
SEKGTKKLNGDRVARKRGGEVDKRKRGEQVAVLLSIDRSKHMIDGVLADDTASEISSHLEPYIVKDSILCSDGAWAYVSI
AEETNCDHKRLISNENRVQDKIYHIQTVNGAIAHFKGWIDIKMRGVATKYLPHYLAWFRESYAGLNFQQMLVAAYR
>46156674_Hso#DNA/Merlin gi|46156674|ref|ZP_00132320.2| hypothetical protein Haso02000662 [Haemophilus somnus 2336]
MTIPLLLLSFLARIIVPLLQLLIVFKSKKAWKIESGNKGIFVFMAQHFLLSANARHLSLTQVVGLADAEIQALLKKARWG
TEDEQVCPHCGVRHSAYFTNTRQQWQCKHCHTRFSITTGTIFQFHKLSLRQILIALYLFATESTGLSAISLSHKLNVQYK
TAWVLLHKLRESFNLTKDLTPLSGEIHSDGCYVNYYIRPKNFKHRRIDRRAKRNQRKDKACVIVFRQRATNQSIMKGADK
SIVAMIKEENGNDILALTHHLVKANSVICADENAAYGLLNIHYRLERVNHSQEYCSIDGITNNLVESFFARFRRMMTGVH
HRISNRYMMHYANETAWREDERRKSEKEKFTQLLNKRLSCPPSRHFVGYWQGNKRPPATFGIASLSENAADYHIAV
>27353421_Mim#DNA/MuLE-MuDR gi|27353421|dbj|BAC53583.1| putative transposase [Mycoplasma imitans]
MNSKDEQMKQIQKLIVEFVKQFGPSSGKQLLNITDYIAKPVLQALVDGEHVGKLELLRENADNDENVYQNGSYTRNVKWG
QEEIPIKMKRIRGENQDSQIIPKYQRIIHDKFILDVLSLASTRLSNNEIADQITSMYRFKVTPSVISNCIQTVQDEMRDW
HERPLENNYPIIMIDGKVFKIKTEESGRSKYVNKTLYVVVGINTDGQKELIALYVSNTKSATEWMNILDNLKERGLSETC
IIVSDGLKGLKEAIENVYPKAMHITCTVHMIRNAAKYVSHSMKSDFLRDLKNIYGADNWESAKNSFEYLKNKWGGSNKRA
VEVVERAMDNIEKLFTFSKALRTLVYTSNIVENYNSVIGSFLAAKKSFNKINQLLLDLYVHFGYNPRYKKLNQKSNRLRN
WYRIYEELMDVFPNLLKKN
>48858447_Cth#DNA/MuLE-MuDR gi|48858447|ref|ZP_00312401.1| COG3328: Transposase and inactivated derivatives [Clostridium thermocellum ATCC 27405]
MDAIHYKVRDEGRIVNRAAYVVIGITVEGSKDILGIWIGDNESSKFWLGVLNDLKNRGVEDVLIFCVDGLTGIKEAINAA
YPKAEVQRCIIHQLRNSFKYVSYKDIKAFSKDFKEVYRAINEEVAMEKFCEIKDKWGKEYPYAIRSWENNWDVISPFYKF
PEEIRKIIYTTNIIEGLHRQFRKVTKTKTMFPNDSSLEKMLYLGSMNVVKKWTQRYKNWDKVLSQLMIEYPGRLEKYI
>48825267_Efa#DNA/MuLE-MuDR gi|48825267|ref|ZP_00286532.1| COG3328: Transposase and inactivated derivatives [Enterococcus faecium]
MNDFTTEIMEILINKGDLDDLFRRHLELAINALLQAELTVFLDYEKYDRAGFNSGNSRNGNYSRSFKTEYGELNLVIPRD
RNGDFSQQTLPAYKRTNDSLETTIIQLVQKGITMSEISDLIEKMYGHYYKPQTISNMSKIVSEDVSAFKERTLEAKYSVI
FMDATHIPLKRQTVSKEAVYIVIGIRLDGTKEVLGFTIAPTESAYVWKEILQDLKDRGLEEVLLVVTDGLSGIDDSIHSV
YPNAQFQQCCVHISRNIAHKVRVSDRQEICSDFKLVYQASSKEEANNQIRFMIDKWKKQYPRVVKLLMNPAILTFYNFPP
SIRRTIYSTNLIEGFNKQLKKYTKRKEQFPNEESLERFLVSQFNNYNQKFLCRVHKGFKEIHDTLESMF
>49146406_Cta#DNA/MuLE-MuDR gi|49146406|ref|YP_025514.1| transposase [Caedibacter taeniospiralis]
MSKDNVLDLKNTVDTEVKDALTGLIREAANKAIHEAILVELKEFMDSLADLKLDDGKHQVVRNGYHPTREVATGVGNVKV
TVPKVRDRKGTGIQFHSLLIPPYMRRAKTIDELLPLLYLQGISTNHFQQALAPILGENAKNVSAQVICRLKETWHAELAL
WRSRSLSDKHYVYWWVDGIYLTARMESEKTCMLVIIGATVDGKKELVAFDDGFRESAESWAELLRDIKRRGLVAGPELAT
GDGAMGFWSALEKEFPKTQCQRCWVHKTANILNKLPKAMQSRAKSKLHNMYMAPGKEQAEEAYKEFVATYEARYPKAVEC
LTKDKERMFTFYNFPAEHWCHIRSTNPIESSFATIRHRTRQARGCYSRETLLCAFFKLARQAEKTWSRLRGHQRLAEVIN
MVKFIDGISEHEVDKIKQDKQNAA
>50543232_Yli#DNA/MuLE-MuDR gi|50543232|ref|XP_499782.1| hypothetical protein [Yarrowia lipolytica]
MRQLNFIGIDSCNRCFPIANAYVTREDEDTYQWALEQLKKFMDKHIIPMPEVVLSDCCRAILNALKNVFPEPTTTPQLCR
WHVNRAIRRKGCMLSRSGEKFTKFTHLFAKMTDADSPETFDKLYKEFATVFANVKGPSKAASPDEMGDNDEREEIRKYSP
VEYSKYWFGDDNDHRYRDKIVKFHVEKSSDFFNLSSSRVGGVHAHYRRYMRTRRMSIFASGRLLIRTNLGLLANMNHRHA
MKMSTHVMDRNHDWLDDNIQKSISAIAKKKVHDQYELRYNDNMKEDCSGSFKSRNQLPCAHAVGDIAKTREGGRLVLRDF
HPRYRLFHLTKQMTDDEWEQACTVGVYAEEWQQLRAREERFKCQPPPPPEPRSMDILDKSIVNGSTPAVRMKSYFVMDGK
RYPNCKVCQNPSHSHVTKFKCFKDRFSRKDAMKHWNRYNFSGRKHDNE
>50260537_Cne#DNA/MuLE-MuDR gi|50260537|gb|EAL23192.1| hypothetical protein CNBA5360 [Cryptococcus neoformans var. neoformans B-3501A]
MASTDLHSSDPLSPQPGICPPSPIIRVPEAEIYSGHQSMAFDFDEGNLHAMEGSDSSEVSNIADEEDSEDDIIQAPIDSF
NDDEMISTPGFDEQAYYQSKDECKGAVQAYAASQGFAAVIRRSKRKKPTKTHKEGRELIQYSCIFGDEYRCTRGDSFKDV
RIRTIQTVKNGCPFAAVAWEMAEAEVKEHGGDKCWTWKVVNASHNHPPVANIGIALLRRASRTPEAKELINTLIDSRTPF
PSIISTMSQRFPTVMLTSEDLHRLAFRRRADLRAGSSASAACIRQLVSNDELHRPFVNTRDELIGLVYTKRTARALIHRF
PEVLFFDCTYKTNLYRMPMLHIVGSTSTGMTYTAGVILMLRETTNWYTQALNSFFELVGKPDVKVVITDRDPALINALMS
VLPKAYRFSCFWHLQENVKSNIRPCFVDEENIVMAVSNFCKAWVRYCVHAKSDEQLEEGYRKMEELYPGQKYARAISYIR
GLDEIKERFVHAYINKQLHFGQTGNSRLEGQHATLKKSIDTKYGDLLLVIGSLSTYFDQQWLKILKRIELERTRCATHIP
STFVRLKGSISRAAMKLLAEQLTLAKRYLGDYDEGVDDFEESHPCSGSFTKSHGLPCAHRLISFVRERRHLEKDHIHPHW
RLGSAASLKRYLDHINRLVGTPDTSVIRLDDVFDFGEDQELILDPPILSTKRGRKAPNPPVLQEDRMSAPSGRYLTQSER
IMGAGLTQRKKGRCKHCQSSTHYTKDCARVQASRRVDKNQEAENAGEDRRVLVPDSDDEEGNEEDLVEVPNEPNLRPKKH
SRSQYPAPSQIYPSHAVQMQHLPPEPSVPQLPPSSQFYPPLSQYYPPAPQHYPTSKYHVPPTQYIPYNQVLFHNHSEAPT
PYHYPSVSGYNNLQSPQIYQYNLENNVGKDASIRSQEDSIIMQRGRDRHSWE
>46321330_Bce#DNA/MuLE-MuDR gi|46321330|ref|ZP_00221708.1| COG3328: Transposase and inactivated derivatives [Burkholderia cepacia R1808]
MTPTEVQDLMLAFNKAVIERAMGAERNLHLGYPSGQSKPPGQANERNGASGKTVITDRGPVRVEVPRDRDGSFEPILIPK
HERRFTGFDERIIAMYARGMSVREIQAFLAESYGTEVSPDFISSVTDEVMAEALSWQSRPLETMYPVVFFDALRVKIRDD
GVVSNKAVYLALGIQADGQRDVLGLWIEQTKGAKFWLKVFNELKTRGCQDILIAVVDGLKGLTEAIGAAYPRTTVQTCIV
HLIRNSLEYASYKDRKALAAALRPIYAAASEEAARQALQDFADGPWGAKYPTIVQSWQRAWEHVIPFFVFPPEIRRVVYT
TNAIESLNMQLRKIIKTRGHFPNDEAAIKLLWLALRNVLAKTVRAAFDWKSAMNQFAILFGERFTQARG
>29841060_Sja#DNA/MuLE-MuDR gi|29841060|gb|AAP06073.1| similar to NM_022756 hypothetical protein FLJ11730 in Homo sapiens; hypothetical protein FLJ11730 in Homo sapiens [Schistosoma japonicum]
MTHNHPCTKSFMRCDPWFRRLSEEEKESLNPVLQQSSSCDAVMEHVRNKYQKELISDDIRNMKSKTALAFRSRNQVFDYI
RERGHLREFHNGEGNVRRLSRVCFSTEDQIRLYRTFPEVVGIDSTYNINRARFSMFQLVITDNMGRGRPVMFAWTKKEFT
EDVRWILNMFQEIMGDTSSTETFVMDSSHAEIAAVSQTHRNANIQLCSFHVCRALCRKTRDRRAKAYLCRLVSTECKRR
>29569842_Pso#DNA/MuLE-MuDR gi|29569842|gb|AAO84921.1| putative transposase [Paracoccus solventivorans]
MTEERMALIELVEKKADGDLVREMLAFAAERIMETEVEARTGAAKGARTPMREVQRNGYRDRDWDTRAGRIALEIPKLRR
GSYFPSFLEPRRTAEKALVAVIQEAYVHGISTRAVDDLVKAMGAGGMSKSQVSRLCAEIDERVNAFLSRPLEGAWPYLWL
DATYVKVREGGRIVSRAVIIAVAVNDDGKREVLGVATGPSEAETFWTEFLRSLADRGLRGVKLVIADDHKGLRAAARRVF
NATHQRCRIHWMRNALAHAPAKQRTAVAAMLKTIFAQETKVEAETQWDIVADALREKQPKLGALMDSSRDDVLAYMTFPR
EHWAQIASTNPLERVNREVKRRADVIGIFPNDEAIVRLVGALMLETNDEWAVARRYMSLETLARLTDNPTVRLSAVAT
>34497771_Cvi#DNA/MuLE-MuDR gi|34497771|ref|NP_901986.1| probable transposase protein [Chromobacterium violaceum ATCC 12472]
MATTPTRSDVRHRLFRRVVPQDSGRRDVENKAVYLALGIRADGRKEVLGLWVEQTEGAKFWLKVFNELKNCGLDDILIAV
VDGLRGFPEEIKAVFPQAQIQTSIVHLIRNSLNLASWKDRKGLAAVLKPIYQAATADAAAALLDEFAEGDWGRKLPTVPA
MWRRQWEQVVPFFAYPSEVRKIIYTTNAIESMHMQLRKIVKNRGHFPSDEAASKLLYLALRNIEKDWRMPPITWKQAANQ
FAILFGERFTDVLCLTDLSTQNS
>46141805_Psp#DNA/MuLE-MuDR gi|46141805|ref|ZP_00147237.2| COG3328: Transposase and inactivated derivatives [Psychrobacter sp. 273-4]
MTTQSDIKKLAEQMASSMNSFDDIKDFQKQLMQSFIDTALEAEMEDHLGYPKHEKADKPNKRNGHTKKTVRSDSGVLEIS
TPRDRDGDFEPALVRKHQTRISGLDDKIISFYAKGQTTTEIVETIKDIYDVDISSSLVSRVTDNILEDITAWQNRPLSSI
YPIVYLDCIVVKVRQDKQIINKAIYLALGVALNGKKELLGMWLSENEGAKFWLGVLTELQNRGVQDILIACVDGLKGFPD
AINTVYPKAEVQLCIVHMVRYSMKFVPWTDKKAVAADLKAIYGADTIELAQANLEHFDETWGKNYPHVVKSWRNNWEGLT
VFFNYPKDIRKAIYTTNAIESLNSVIRTAVNKRKVFPSDQAAFKVVYLATQQASKKWSMPIRNWTSALNRFMIMFDDRIY
YL
>45360229_Pae#DNA/MuLE-MuDR gi|45360229|gb|AAS59255.1| putative transposase [Pseudomonas aeruginosa]
MNKTPHTITDELLDQLLANYQKPEDLIGTDGILKQLTKKLVERALDAELTHHLGHNKHQPVSNWMGNTRNGFSKKKLKGE
FGELPIEVPRDRHGTFDPQIIEKHQTRWTGFDDKILSLYARGMTVREIQAHLQEMYGAEVSPSLISSVTDAVADEVKAWQ
SRPLDTVYPIVYLDCIHSKVREGAVRVKAVYLALGINLAGEKEILGLWIAQNEGAKFWLQVVTELRNRGVQDIFVACVDG
LKGFPEAIEAVFPRTSVQLCIVHMVRHSLNYVSWKRRAEVAADLKRIYQSSTADEAELRLGEFEAKWDDDYLPIGQSWRR
NWARITPFFDFPPEIRKVIYTTNAIESVNMSLRKITKNRGSFPSDEALLKLFYLALRNISKKWTMPIRDWKAALTRFTIS
YEDRLPQQ
>HAT-1_BF_tp#DNA/hAT-Tip100 (-Gulliver)  750-2360 (C-terminal region missing either in real protein or in consensus) [Branchiostoma floridae]
MKRTLSDFFKASPSKEKQVSSVKVGDSNVSAVNVPVSVSTPPKKSQDKSEKRSEPTVQPSTSSPCPPKKKQCNRKFLQSW
LSIERFRDWLEYREDEDKMYCKLCIKHRKKSKFTRGSTTFQKDTLEDHADSNTHKAAERAEKMSGSIVNAAKKVVSRAET
GVVAAMKNVYFLAKEELATRKHKPLLELQKDVGCEAVSYLQTGGNATYDSAQAANEFQDAIAAVLGENLDAEIADSAAVS
VMIDESTDISVSKNLIVFLSLCCNGEIKTRFLKLHEVDGPANAANIYQALLRTLEERGIPIAKVCGLGTDGANVMVGRRN
GVATLLKQENPQAYTTHCAAHRHSLAVSQAAANFPYLRRVQNIVGTLHTYFARSGKRSQELKNVQQALEEPVLKNLMLEL
HKVRWLSFGNCIENINRSLRSLLELFRDEAEEDPQAAGLYSELKNFKFMYMLEDVFAILDMISTVFQTRALNFSQIDPTI
TGAIESLESIAAGHHGPRLTEFLEADLPNLFPGVEVSNNDERTRDQAQNLTVNFVAA
>Ginger2-1_NV#DNA/Ginger 519-2216 [Nematostella vectensis]
MRIVDDTVLSNMADCVDSQEFLKQIDTIKEQAKTQKSGINVFITDEFYSKAQDYLKEKAKGNERRISNQMTKTEIEAIKR
KKWTLNAKNEVVSSGGKPVLCRSQLHQHLSFAHQRVAHRGRQKTEKWIQDNFAEVTQKVINVFVQLCKYHAEQKPITSRV
KEVTKPFQAPTFLSFIELDLMDFRNTPCKCSKRHQWVLNIIDHHSKYVTCWPLKGKNAVEVLQGLKNYCYSFGFPKKIVC
DNGTEFSNAMLNSFCEENNIKICHGSPRTPTTQGLVERSNRTWKEDMRAILISKQKSVGEWCKATMEASYTMNITYHRAI
KCSPYEAVFGFKAHREVNRIEQDGQEVQEEQLEDNPTVPLEQEEQLEDNPTVPLEQEEQLEDNPTVPLEQEEQLEDNPTV
PLEQEEQLEDNPTVPLEQEEQLEDNPTVPLEQEEQLEDNPTVPLEEHIDNEGRKCKRQKICESQKTYNEKMKKQTQKAKK
FKFNVYDIVAIQIHKSDKVSKLHPNMLIGKITEIDSTSNYVKVVTQFGIIKGLIAPTRLNPCTATNVAFDYDHEVSFTYA
CKQCQS
>Ginger2-1_LS#DNA/Ginger 1134-5549 via genewise with Ginger2-1_HM#DNA/Ginger, 2 introns (1957:3198, 3449:5212) [Littorina saxatilis]
DGAAKYLRVVHAGNIFDVVTDIHAQELKHSGYKKVLEYAQRHYHDIFRTFVQLFCTNCPTCQLSQPQVSRPPLRPIVEKD
FLERVQVDLIDMRHNPDGEFNHICHFMDHFSKYHVLFPLKPKSAVEVAGLIEERVLAYFGPPKLFHSDNGREFVNQIIRA
LFSSWGGXVTFVNGRPRHSQSQGLVERGNRTIEQKLAAMKNDNGCGADQTYPWSSWLPRVMVSLNSEVQATTNESPYKVV
FGKCAPSAIFPRAEPICDESDLENNEQPESHSEPXSMPQERPLTPCQSEPTQPSTPCQSEPLTPPVSRHAMVRKRAFRNT
QTAAEHMENFYNKRKRVKIADFQEGDTVSVGIPKLDRTTSRVKRLPAVIAKAHGTTKKSYLLTTAFGQLKGRYQGGDLEL
YSGTITPNETEELSLREAARKHNPENLFLKAHCNCHTGCMTKRCPCRAKKISCSTQCHGSSTCKTINSAP
>hAT-32_SM#DNA/hAT 481-1955 via tfasty with gi|193678795|ref|XP, 1 frameshift and 4 stopcodons [Schmidtea mediterranea]
MPRVKQSVSNRLKQYVSEFPDFKTDGKILFCKVCNKSVXAEKIFTIKQHLASAKHIELTERNVAKKSTQQFLSGYSRVSK
DAQFAEDLCGAFIAADIPLYKMRNKKIQSFLxKYTEHKVPSESTLRTNHVNSIYKENIEKIKSCISNRFLWLSIDETTDV
ANRYVANVIIGILDPDEVVSRQNFLLNTAQLDKANHTSIARLFDDSIRILGENFNKDSILLFISDAAPYMVKAARAIQIF
YPKITHLTCLVHGLHRVCEQIRGLYPNVDRLIANVKKVFLKAPSRVVFKDLEPGLSLHPQPITTRWGTWLTAVNYYANNF
EKIVRIFDALDNEEAASIKISQDHLRDSTIKADLIFIVSNYGFLGASITKLETSGLELSAQIKVVTDAMGAINVVYGNTG
RHYxKNLLLxSxKNCGFALMRNISAILAGVSVTATEKYTCSETLAFKFAPITSVDVERSFSMYKSVLRSNRQSFLFENLS
EMFVIYCNNNLN
>31195751_Aga#DNA/hAT-Ac gi|31195751|ref|XP_306823.1| ENSANGP00000013743  [Anopheles gambiae]
CTEFPNKHTADNIAICLKNVAEKFKIHDKIQAVVTDNAANMKAGVRQTKFTHLPCFAHTLNLIVQNAVQKSISDTVEKIK
TIDVLTRWNSTYDMINRFHKNKIPILSCLDSMKYKHDLSTKDWLVMEQSVKVLQTFDHVTKVISAEKSVTISKMGILLNI
LRQKIEKEMSDELEPVNQPLEPLELVKKLISILIQGLLEKGKPYLENKLVNQAMLLDPRMKNHSFENDRDRYEETYQSLI
DAMVPFKANNSSAEEPITQQAFTDPSYECLFSDFTSKIKR
>24582377_Dme#DNA/hAT-Ac gi|24582377|ref|NP_609087.1| CG13775-PA [Drosophila melanogaster]
MSKKKSNVWQYFYKTSGTVATCLLCNRNYSRRGRGTTCLRNHLKSKHPPEFLSLSGDIKYLDLVKSEISIGSPQHPTAQL
ELNLHETDSDPLDTEDISYSKRCDEKLALMLLNHSFEFIEGPGFVNFIRTLQPRYTIQPRSYYEKILCEDIQRKMHQHLK
QQVDLLDAISLSTSLWRGDKGEGLLSLSCSGISRDFQTHRLMLKCEALNYESTSKLACCIRDLVPSLAIEVPKEKIHCVI
RDEMTALPGSLPDCSVHRLQMCVRFALQSNELLQNLSSKCKQIVDHFASSKMANDHLKFIQEIRLTRDPCTLTPYDPCQW
NSAFQMMSSVFRMKDALSLYCEEYSLVQIYPDEWIEIDLCSKVMQPCEETIKIWSNPSTTTSSVIPLVAALRDSLRTDVH
NFVSSVTICSFARKLLEELEMKFAHITSDINFLMATYLDPRYKQAFFTEREEQLVANEVLLQLAGVPEDCNGQPPLKIIK
VSSTSSQKNESKIDSILDSILTTGTTNTQQPNTSMGSQSQIKNLLYLYNSEPRIDRNMDPLIWWRSNIKYISLYGIVRKF
LSAPAASVVSEGLFRKSTHLYFDMQAGLSPESASKMLLMKANFSFSNSEIN
>Ginger1-10_HM#DNA/Ginger 394-2730 [Hydra magnipapillata]
MVRHIDFITIENYVKEKIYPQEIRGDKGKKSNLRKACKHFSIVCGQLMYRSEKLVIACKDQQQKIISDIHSGLSEDAKVK
AMASHRGRDTTYQKISNRFYWHNIKFDVEEFIKKCMQCQKHGKIKSVSTELHSIPVKSKAMEQVGIDICNLPEVDGFKHL
VVCIDYFTKWSEAKPLKNKTAESIALFLYEVICRHGCIKIQINDQGREFVNEVSKNLHTMTGTEQRVTSAYHPQSNGLCE
RQNRAIKEALVKVLDETAAEWPYIIEGILFAHRVSKHTSTQYSPFFLLYNREPTLPVDIKYGLVDIKEHEMEPFDRETFN
AVLVSSITLREEVYKSAYKNIQTAQNKQRKDYNKRHQVPLLIGVGQKVLLKNQKRMDRKGGKFSFKWLGPYTVHSISKNN
LCCLVNQKGKILKTKYNVTLLKSFVDYNEKPLHDKMLNSCVKTEENITSLWCMLSDEVVKMILTNAVQTSNNVTETYHSL
SCTCIRFNKILQQKKKFLLPRIFLKFRDHEFSSLMQYKNIIKVSVQRLLKIFGSCSAVATSLYNIINDSKWKLAWIVICA
EKLSWFTVERIFWKSHQTIISVNAKEDLKPEPPWLDFPNLYYLKTEDKQILLSHNSWLNDSIMDAAQMLICKQLGPNAKF
QSVLNVQKCSNSPYQPVNNEHIQLMHNGSCHWFLTFCSNRKVNICDSLYTSLNLVSLKCVNSLYKNNADSNGDLLINFLP
VQKQTDDNSCGLFAVAFAAEILAGKPAIMTNFDVLKMREHLLLCLKSQYLSPFPKKKIN
>GIN2_int#DNA/Ginger EXAPTED GENE! gi|50756349|ref|XP_415124.1| PREDICTED: similar to MGC80999 protein [Gallus gallus]
MESSLQVAEEEVVVAAEPCVPSSKFEDIYRLLAEGCFPPSFCSIKRKNLKRYAQKFVVDGGCLYYVGPKKEEKREVIVDP
ERRRQVFLESHFTEIGNHLGQKKTVHRIQSRYYWLGIVKDVVDWIKMCETCQNAEHNKNISRKTRPVKVESPWEVLGLAV
HGPFPETSQNNTHVLIVTDYFTKWIEAVPLQKKDALSVAKALATIFYRFGASKNIYAGESWDFCEEVSRLLCERWNISQI
LTPANPVDCVGLDHRSAEVLKSSICNVVNEKPSEWDSHLDPVLFDFRTSVNSATKYTPFFLMFNRYVCLSSEVDFVKDSK
EQSVNSAKADGLPPFTAAVQEQQNAVKEIVIANMTTAYKRERKTMKRKSRVLPSLAFKMEENVFGSNSASSLKKLKKGQF
VSFQIETVLPNEQSMAEVKKTS
>CryptonS-24_PI_yr#DNA/Crypton 238-2415  [Phytophthora infestans]
MKRAPRGLDTPAGTVGQEVAAVKVFSEFLCSADLNSDALDKMHASLVATTSLPMQNFYSLLTAFSIFLQTKKSSKSRAAD
GYLAKATALGYFSQVVNLLRERYSDSLQDSKRIAKIRDKMTSAIDERNLRANVQTNDAPGCTVNDLSLLVDHLVVHADVA
TGLKNIHDGALLTMMWHTFGRAIDTCFARKQQLSVAASGELFLHIARIKTSVVQGVSIYKSAERWEQCMLHAFGMLFVCY
DEPSEYLFPLVPRYAVSELPGSQTYTQEEAVIFWESLQHDVEKESEQPLKRERKRPNIAGYVTEVMRDCLREMPQETRQE
VTPNMTSHSLRRGAAAYANASPKLAIQWISTRGAWLLDSLTKAFAYIGTTTREDQSVAKVLAGYESPDLPVATPSIEDLQ
ERLTVAEFGQVITLRNQLYQHVLGSPDPRLNVSVEVANVTFAVLLMHMETVLATIKNTASSPSHVSRYLYELERGIASTN
AALGCHISTSTCCEWGLHLATRWRTTNHSQLSRTVAXSESLLSSTLENVLAQLTSINDRIARIEDAVAAVAVRTIEAELG
PGSSADGPGQAVPAVAAPATASTLAGSFLNWYLHRIWETVKGKKEQNKRAEFKAAVNVMKVLYQAPCQIPAQPTHSDKAA
HDAWKHAVWTLAVSMDRTANEXLHKFDGKKPTSKVSTLRKRWRALRSSHPAAYQALAAQYLGLVTNGSIVDSCTPVSHQW
TASDLA
>Ginger1-4_HM#DNA/Ginger 374-2764 [Hydra magnipapillata]
MAKERKHFDFDNIEDYLRNKKYPSTISTHDYGIKSNFRRAAKRFEVKDGHLFYNKRMVIKDKELQMEVIRDVHRGIGDSE
HSKAMASHRGKNTTYDNIAQRFFWYNIAADVSKYIRSCEQCQKQGDLKSPKVELKSIPVPSSVMEQVGVDICNLPVVDGY
CHIIVLIDYFSKWSEAKPIKEKSAQTVSQFLYEIMCRHGCFKIQINDQGREFVNEVCKQLHELTGVEQRVTSAYHPQANG
LVERQNRTIKNSLVKVLEGNPKMWPQIIEGILFAHRVSRHSSTNYSPFMLMYNREPILPIDVKHSLVKDESNKQEHREEN
IDVEQPFDFNFFDAVFSLTSKVRATIMSEASENIKVAQKKQKRDYDSRHLSKSEIKVDDIVLLKNNKRFDRKGGKFSQKW
LGPFTVVNISEKGVATLKNALGLTLKKTYNIVQLKTYIQGADDKLKPILVEGSAYFWNHAPDEIVEMILMYAVQQSENSF
PGHKCETYASIKSTCSKWARLIERKGTTLLPKIYIDSWKPLGKPSDHNNESNTVSTQMLIKTFGKSSGLASQLSNCIGDK
KWRSSWLILTPQKHSWYTIDRIFWKTKVCQPNQSSLQVSSLWLKNELYELTEADREILESKDSWLNDNLMDAGQKLICKA
LGSHETYQSVLNCQKKKSTYFPVSGDHLQILHDGSSHWLLAFASNGRVQVCDSLRTNLTSISKKCLKSLFQPLVKNGKLE
VTFLPVDKQIDSFNCGVFALGYASILLDGKSPLDVRFVVNEMRTHYIKCLTDAHLYPFPTLEKAVDVLCNKPKLFMI
>Ginger1-7_HM#DNA/Ginger 134-3421 via genewise with XP_002161102.1 (which has one intron too many), 2 introns (261:1067, 1230:1412) [Hydra magnipapillata]
MADRDYSVEDVKKYLYDGTIKKCLNLKQRKSFLKYAKSFQFIDGKLYYVTATKKLQVLSTDEEKKLAFRDVHDSNHGAHV
GLNNTRVKLKSAFYWLGMVSDITKWIKECDNCQRMEKIKTCAPELKPIKVNGLWEFLGIDLIGPLPLTTQGNKYILTVTD
LWSKYVEAFSIPEKSAFFVSKSLTTLFYRFGPPKKVLSDQGREFVNDLNEFLFSIFNIKHLITSAYHPQTNGQDERSNQI
IKRALSKVANKSQDNWDTLLEPVLFGLRTCVQSSTKFTPFSLMFGREARLFSTLALNDNDPNFNDININIAESNATESQI
QEIMDSRIAVHAIVNDNICIAQKKMQKNHDKKHSKGFKSFNFKVGDKVLVKNYKKIGRKGCRMEHDWVGPAIITDFKPTG
AVVSLNGKVWKSAVAMPNMKPYLEKNLNFISSNILKEHNYCLQITDKIHLNEESCECASSSFMALNIASTLMYDLERKKM
KDSQVRDFPTSPSDFYNCSNSNYDYSNKILAVEEVKPVDSVVKSVKSNSSCRSLNFSKVSCAIPVASNFYSELSTQCKNK
ALDILKNPSGWLDDTLIDIAQSLLSYQFPKISGFQSSCILSCFNSGGYSESCSFIQIINIRNSHWVLLSNVSSDDLSDSK
CVQFYDSLFNSSNECDVPLLVHTVARSSLNCHTSSSLIVEVMDCQMQQNGNDCGLFAIANATALCNGIDPSLIIWKHNDM
RKHYLKCIENGKLEMFPFVTVLDGHKRCAFTIDCNHFCKCRQKNNN
>Ginger1-6_HM#DNA/Ginger 177-2847 via genewise with Ginger1-7_HM, 2 introns (283:724, 887:1006) [Hydra magnipapillata]
MAVHVYSVDDVKQYLSDGIIKFFNSRRIAKNFKLCDGKLYYIKSSKKLLVLLTDHEKKLAFRDVHDSDHGAHVGLNNTRA
KLKSSFYWLGMVSDITKWIKECDKCQRMEKIKTVAPELKPIRVNGLWDFLGIDLIGPLPITSKGQKYILTVTDLWSKYVE
AFPIPEKSALCVSKCLTTLFYRFGPPKKILSDQGREFVNSVNELLFSLFNVKHLITSAYHPQTNGQDERTNQTVKRALSK
LCNEAQDNWDELLEPVLFGLRTCVQNSTKFSPFFLMFGREPQLFSALAMNPTNSNLIDGNNDIHSTESQIQERIDSCNKV
SIVVNSNILYAQTKMKKYYAAKQMKGCKSFSFKIGDKVLLKNCRKIGRKGSRMEHDWLGPATITSFKQNGAVVTRNGKVW
RNAVALINMKPYIEKNQTLSSAIILNEHNYCLPRKIKMARNNKNIIEPIKSNKRHIVDSKCYVKGRKNKLTKVENSLSKN
VYPAISVNNKFFLNLSTQSVKLGLDILKNPCGWLNDTLIDIAQSFLSSQFPHIAGFQSSCIFNKNNSGGYIPSGKFIQIL
NVRNSHWILISNVSSDTCLKSSVQYYDSLFTSSKEDVPLLVHRVAQSLLICEDVSSISFDVMNCQTQDNGNDCGLYAVAN
ATALCNGIDASLIVWEKKSMRKHFLMCIEKGKLEMFPYITILNGLKRCALSFLCDDTCHCALG
>34896302_Osa#DNA/hAT-Ac gi|34896302|ref|NP_909495.1| hypothetical protein [Oryza sativa]
MWGDTRRRSTSSRPPERHCRRSPDPFRRSVDARQLSPGMDDYGVDDRHMDGLEGDGDDPMEQLIPKANDDTDLSTPGGEA
EPFAPSAGRVERWRHFKKIRVIVDGIGHLNRYYLTHLKDKAPAGARQTQLSFGPDGSMYCKNSIYNLLQEFNLQSRVVSI
TLDNASANTTAMMILESNLQSYIGGYVIHQRCICHIINLIVQAGFTVISNLLNKIRQAVSIIGSQSVMKARFRDYCQAKD
KPVRMFGIDVKHRWNTTYLMLRQLKGYEEIISVFINSLHVRCNDTDENGECEI
>Hoyak2_tp#DNA/hAT-Ac 295-2018 via tfasty with hAT-2_DSe_tp, 1 frameshift and 1 stopcodon. There probably is an intron instead including pos 1790-1810. [Drosophila yakuba]
MCIKCGKTYQTSGNTTNLSCHIKRIHPNLTVSDLPQRQQLSSRSFIEKKYETSSNRKQTLDSALCSYITSDLRPFSVLEN
KGFRNFVSHLDPRYELPSRTTLRNVSMANAYAEKKAKLFELLKNVKHCAITSDCWTSRANECYVTVTCHFVTADFELRNA
VLVTEKLIDETTHSSENIANSIRAVLEEWSVLGKVTAMVTDNAKNMIKACEILQIRHVPCFAHSINLTVQDCLASENVKP
ILEKCKRIVAFSKSSTISFVKFREAQDCVRPYSLKQECPTRWNSAFYMVERIFITKVAIASVLLNTSKGLMPLTSDEISI
LEDLKALLSPFEHATVHTSSSTSVTVSSVIHVPCGILHNLSALKSKLQTKVVCDDLLQGVNKRLVPYESRTVTRMTTILD
PRFKKEGFWKTFNSSQGVKSLEEELSHIYAQTKSSTSLNPPTPEPTAESNLLFSFLQANKNQKIQSDCVDSILALRHYLN
GTNLEPAQNPLDYWKVQKKIIxMVTNLIQFLPFNRYQMTPHSKHAILKYFCVPATSTESERMFSKEGLVLSEKRSSLKAK
NINVILFLNKNDWIN
>Homo7#DNA/hAT-Ac 444-2224 via tfasty with Hoyak2_tp, 1 frameshift and 1 stopcodon. [Drosophila mojavensis]
MSGVWDYFKKCADGKTAKCTKCGQICQTSGNTTNLSAHLIRKHPNLSTIEESKAAGPISTLLQKKYDASSARKKTLDSAL
TTYITSDRRPYCVVEDKGFRHLVEVLDPRYQLPSRRTLRDVCIPNLFIEMKQKLREILDKIEFCAVTTDGWTSKANENYL
SVSCHFITEEFEMRTAVLSTTKLKEETNHSAQNIANSLRDVFNEWGVAQKITAIVTDNASNMKSACEILSKSNVPCVAHT
INLIVQECLANENLKPLLAKCKQIVGFFKSSTIAYAKFREAQNKENPLSLKQECPTRWNSAYHMVKRFLETKDAICKVLL
NTPKALSPLSADEIVILEDLEKLLSPFEHATKSTSSSSLVTVSMVIPVCCGLLHNLESLKGNLATEEGERACTILIYGTR
NRLLKYESRSNTRISTLLDPRFKKDGFLSPFNVSEAEKFLESELSMFNALSEPHPSSSNLPAPKPAVQPHPLFDFLKKKK
SEKIRSIRADSIIGLKQYFNTENVEPSISPLDYWKVKIHNIRVNHFxLKQFLHRSQLTTHSKRCVKKFLCVPATSTESER
MFSKAGHIVNEKRSCLKPQQVDMLFFINKNDWTK
>47204330_Tni#DNA/hAT-Charlie gi|47204330|emb|CAF95678.1| unnamed protein product [Tetraodon nigroviridis]
SKMAKRKADNRNFLDRWETEYLFTYVKDKPVCLICGVNVAITKEYNIRRHYETKHHDKYKDLDMTQRSQKVEEMKRKFVK
NCMLKVCDIVCPEKKQAFSNVSLSRNTIADRTCDLATNLYDQLLEKGKDFVAFSLAVDESSDASDTAQLSVFIRGVDSNM
CVTEELLGFKSMHGTTTGKEIFEEVSKCVTEIKLPWDKLVALTTDGAPAMCGKTSGLVGRVREKMQEENCAGELTVYHCI
IHQESLCGKALKMEHVMTTVTQVVNFIRAKGLNHRQFKSFLEECGSEYADVPYHTEVRWLSRGKVLNRCFALHEEICQFM
ESKGKDTAELREKTFLCELAFLCDIWSHLDALNLQLQGRGRIITDMYAAVRAFKTKLCLWENQMLQGNLGHFTCCQTIKT
QLFTTLFPCAQFAEKLSVLCAEFSRRFADFDVQKCRFQLFSNPFAVNVKNAPTNLQMELIELQCNDTLKSKYDAVGAAQF
PQFIPDTMPQLRTEAAQMLSMFGSTYLCEQLFSSMKMTKTSHRRRLTDEHLRSILRISS
>Chaplin2a_FR_tp#DNA/hAT-Charlie 212-721 [Takifugu]
TISVKFAFKMAGKKCTAKRENLHESFVTRFRDLQLKRPQIAFLAAPFNVETHCWKAPLVTDEAAAELEMIDLCEEDQLKP
ALREGAIEFWKSVPMEKYPNVKRAALKILSIFGSTYVCESVFSTLKHVKPKHRSVLTDTHVKELLRVATTEYKPDLKRIV
QSKECQKSH
>47215859_Tni#DNA/hAT-Charlie gi|47215859|emb|CAG02322.1| unnamed protein product [Tetraodon nigroviridis]
FEEVSKCVDEMKLPWDKLVGLTTDGAPAMCGQKSGLVSRMREKMREKQAGELTVYHCIIHQEALCGKALKMDHIMSTVTQ
VVNFIKAKGLDHRQFKSFLEELGADHSDMPYHTEVRWLSRGKVAKKCFELREEICLFMESKGKDTTELRDEKFQCELAFL
CDIMNHLDALSLQLQGRAHVITDMYNAVRAFRTKLRLWESQMQRGNLAHFLCCQVMKEQTATAVMPFAQFAEKLILLDAE
FTRRFADFEAQKCRFELFSNPFAFDVNNAPSNLQMELIELQCNDPLKSKYDSVGVRNSHLTSLTRCPNSVPNVRKCSLCS
AAHICASNCFR
>HAT-15_ZM_tp#DNA/hAT-Ac  704-2926 hAT-25_ZM_tp 85% identical. [Zea mays]
MSTADDSADDELSLEAVVEERRLEAQNEADDARCLLLGTTSAGAIDLDGAGAQTGTGSTSPTADASTSVPVPGKRSRRRG
PTSKVWLHFEEVTAMQNGKEVRVSAICLHCKNSMSAKSSSGTGHLIRHLDVCPAKKEKDRTGKTQSLLKYNADGSVNHWE
YSPSVARTELCRLIARLDLPLCFGESSAFQEYITHAHNPRFIKSSRQTTARDLIRLFNDRVEQLIEVLKHVSSVALTSDI
WSGKAKEDYISVVAHFVNSDWCLEKRLLGLRPIEVAHTGLNIAERVEMVANDYSITDKIFAIVLDNASSNKTAIDVLKPV
FSGYIGHLIPAPTRNESDLSNIFLHQRCACHIINLIVKSCLKRLQPYLEDFRTAITFLNSSNQRIASYKQYCMSVGVRPR
KFGVDMDVRWNSTFLMLKHLVPYQSTFSVWIRTNHPCKDDGSFLLSDNHWSIAEKLLSFLQLFYDSTVALSGVYYPTSPL
MLHHILKIARHLNAYENHELLRNAVVPMKTKFLKYWREIPILYAFAFILDPRAKMRGFHKVLQRLSTLNGTDYSRYPSCI
RTKLTKMYQIYETKFGGVCLTPQPQSGSGSSKATEAWDDIYGDDETYSNTGTGGTSGTSTGLSELTSYLDSDTETKFGPD
FNILIWWQRHNQTYPILSILAKDVMTVPVSTISSESTFSLASRVLEERRRRLTTDMVEVLSCIKDWELADQHKQHTVEKE
TKDLEATFEDMYLDDEQQVSP
>HAT5_CI_tp#DNA/hAT-Ac 238-2082 [Ciona intestinalis]
YNKTCKMSAIAKVSSSKVWDYFNVSEGSVKCQLCKNLVSQGSTSSAQKNTSNLWSHLRSKHREVEVYEQAHCHKIGKSSK
VVQPTLFQSFDNSRKWSNTDGRSRNLDKLIIEMIATDIQPFSVTNDIGFKRLLATAEPRYNLKDEKYYRTEMLPKVHLKV
VDKIKNMLKEENAGESLSFTTDCWSGSTESLMSLTAHFIDNQWKRKQLVLSVKSMSESHTGDYIGKVFLDILSQWEIDRS
RVLLVLRDSGANVVKGMRVADVSDFSCCAHTMQLIIKEGIESQRVVIDIVAKLKRCATHFNHSTLAKKRLHAIQNQVGLP
VHSIIQAIPTRWNSTLHMLRRMLEQKHALSIYASEYGHFSLPNTYEWELVAKLVALLIPFETITLEISHSEASASCILPS
IAVLKALLQSDNEATFGIGTIKGTMCESLLRRYCNVENVKPVVIACLLDPRFKDKPFSSEIVLGRAKDWLINEVKEQDQG
EEPVAAKKQKQSSDSENDLLSNLYKNVLGQGSTDNNECESTDVQTEINKYLSEPLIDRSTGHPLDWWKNNETRFVILAKL
ARKYLNPPPSSVPSERDFSTIGNIYEDKRSRLTGEHAEQLCFLYYNLHLLEYNY
>38345099_Osa#DNA/hAT-Ac gi|38345099|emb|CAE03220.2| OSJNBa0050F15.11 [Oryza sativa]
MENKVKCKACETLLTKNSSGTTTHWRRHLEQCDYHKLQQKSIKQQNINFPSLDEGDVDLDAPCVSVPGYYDPTKIRDANY
RWLPTPEEWNLYCEVNDALSVIHAATEEFSGSTYPTSNLFYSHIVDIKRVLGQLLKSKDPILKEMANAMLEKFEKYWGPE
CNTLFAVALVVDPRFKMGMINYTFPALYEETVLPKKLTNVESTLKSLHASYESELQSTSKENDATIQSTSTSLGTTSSHF
SAASQFHEYMKSKNAASLPKSDLKRYLDDPVEDIPAKSFNLLQWWRMNELKYPIVAKLAKDILTIPITSVSSESAFSTGG
RVISDYRSSLLPSTVQALEDDTNSIILVPTQASTANSVVGSN
>HAT-1_DP_tp#DNA/hAT-Ac 417-2207 [Drosophila pseudoobscura]
MSLIRKYSEIWNHFEEVGSQEAKCKYCKSILSCKSQSNLSRHLKSKHPASMEPVIRQNTDGPIFVQSAQPKITSFAERPV
PASKAQQIDLQLVRMIAKGHHALRLVEEPEFKKFIHDVSHAPNYKLPTRKTLTSSLIPKIRDEYTGTIIEELRAATAVCL
TTDGWTSITNESYLAVTVHFIDEESTMLTSYTIACQAFEASHTAANLCSFLEKIVNEWDLKNKVAAIASDNAHNIALAIR
TGNWSHIRCFAHTLNLIVQKALDKMSSVRRKAKAISEYFHRSSSGLKKLKDMQALLKLADLKLTQDVPTRWNSTYKMFER
LSILKEAVVAALSTRTDLILSPEDWDVIDGVLPVLKPFYEVTEEISSAEKNVTLSKIIALTGLLQRKMAQIYPTVKNNLV
AEVINEIINEMDGRFNDFEANILYAESTVLDPRFKGRAFKSAEAFKKSVADINKKLAQTIRSLPEPPQEAISNKKQEEDT
IWAEFDTTFQQVSQPTNNTAASIREMDKYLAEEYISRKDDPLVWWNQRKAQYPLLYTYMLKRLCLVATSVPCERIFSSAG
ETIRKRRSLLKSTTVENLIFLHNNMQIGSEYNLICT
>hAT-15_SBi_tp#DNA/hAT-Ac 2821-4685 via tfasty with HAT-6_VV_tp, 1 frameshift. [Sorghum bicolor]
SKRRKLTSHIWQHFEAIYDNDILVEAQCIHCNQVFKATRGVGTSACGRHIKVCEGKARLEEMVSQLSSTVPLTDASLKNW
KFDQQVARQELVNLIVMHELPFSLVEYPKFRTFVAALNPWFKQVSRTTIRSDCISSYEEGKIVLRHVLQNSVSRVSLTAD
LWTSNQTLGYLCVTCHYISESWKIHKKIIKFALVETPHDGWNLFNAMLETLQDWNLESKLFAITLDNASVNNNFVTTLKE
NLVSKGQLLRKGKLFHCRCAAHVFNLIVQEGFKAISSATKNIRESVRYVKSSQARKQRFELMVEKCSIPVEKRPPLDVVT
RWNSTYHMLVTSLKYRRAYEALRQNDPQYIHEPSTEDWKLAKKLCTLLEPFYDATMKVSGSNYPTSIHYFHQIWEVKKDL
EKEASNSELVIRTMVHEMKQKLKKYWDLSYLNICIPVILDPRFKLKFLEFRLKEGFGIEAFRYLSKVETTFRKLFAEYSL
KVGDSVIAEEHSVSNVELNELDPWADWAQHQTCSEKKKVNELDQYLEEETVPVTVDLDILQYWKIHSTRYPVLGCMARDI
LAIPASTVASESAFSTGERIVSDYRSRLKSETIEALICLQDWLRSEGKSQYHYLFIISLYAK
>HAT-4_DR_tp#DNA/hAT-Ac [Danio rerio]
MSDAETIYSPLGFKSKVWQHYGFYKKDGRLDKTDAICKMCRASVKYTGSTTNLISHLKRRHGVVVDSVEASSSVPASSAS
CSDSPVANSSKSGEKSIESFFHAPLANSSARSTAITDAIALFICKDIQPYSVTENEGFKHLLHVLEPRYKIPNRKLFSDK
QIPALYDKVRREIEESLHKAQRVAVTVDGWTSCATASYVTVTAHYIDDEWVLKNHVLQTRVFNEAHTGNNLAVLLQDVCR
EWKIEEKSPALVTDNARNMILAGAGAKMDPHVRCIAHTLNLASQKAFKVDSVSELVVKVRKLVSFFHKSPKATDLLREIQ
TQLHLPNHKLIHDVSTRWNSTLDMLERFWEQQPAVLNTLLSRKIKRREVMASLTEDDMTLIPEIIKLMSPLKMATTLLSE
EKNPTISIISPIQAKLQRQFQPDEGDLEVISHMKDRFRQDFDGRYTYLEGTLNCASALDPRFKDLAFLDDNDAKDMVFMK
ITTEVVQMNGEEEVNVTIPNEDQKAGTLEEDQTAETESHKSPSKEDKTDDAPPKKKTAMDQMFGDFLSARPPAKTIREKA
KDEILKYRERDTLGLDGDVLQWWRLQVDLPLLSALAKRYLSIPATSVPAERVFSTAGDIVTAQRSLLHPDHVDQLIFLKK
NL
>Transib-12_HM#DNA/CMC-Transib 1623-3587  [Hydra magnipapillata]
MRPTISVLMTKFRKKYKEAAQRQDYFFKKNENWLKTSVYFQIDAKRAIVNKSTGRPTGSFETLSDRSKRRRTKEMRTKFS
PAELSFATQMSLRSSGHSDAAKIVNDVTLSSPFKATKYKESLQLSLSLPAFYDANEALALLLDLSLTKDLYQHLRNQAKK
KGLNTFYPPYSAVLAAKKCCYPPDDTLNFTESKAEVQLQALLDHTVQRILLLNQDNITYKSDSEILNMTLICKWGFDGTS
GQSIYKMTFEDPNISDASLLFTSLVPLQLVGVNQETKEENLLWSNPKPSSTLFCRPLKLQFTKETEETFINEKTHFDKQI
EQLQPLKTTIHMKNVFIQYSLSMTMLDGKVCNAITNTKSAQRCYLCQATSKQFNNIDEVLQRPVTTDYLQYGLSTLHAWI
RCFECCIHLGYKKNTKKWQARKEEDKQEKATMKASIQKAFKQQLGILVDMPKQGLGSTNDGNTARRFFENTQTSSLITGV
SEELIHRFHIILQTISSGHEIDVEKFRGYVLATARHYIKEYPWYNMPTSVHRLLIHGPDIISSAILPIGQLSEDAQESTN
KLIKQYRLGFSRKFSRVKTMEDVFRRLLATTDPYISSLRKSTPKKLKTLLPEAVALLVPVTEDYEDSDADSDETNFEYNK
DFNKETDQDEKEPK
>Transib-11_HM#DNA/CMC-Transib 1074-3029  [Hydra magnipapillata]
MKRLDLIPNIRELGVDKLKLWKDLLNEIKNTEKIRKENLNKVKLALVIFISKVKKKLKQCGRNYDTFIQKENRWLQRNLM
NNKNSHFGSGRPHKQWSVLGERSKRKKIKELATEHHEALFLASAKSANAAGEKKKASVLKNNISNVLEIEKVDKTLDKTF
PINMSVEDALALKMNTDLSDKQYQMIRNSALVHNVHIYPTLHDIFVEKLKCYPENIHFSEISAKCTLQSMLDHTVSRITE
MIDMPNFGQSDEIFGVLYGKIGFDGASSQSIYKQKYDTSNASIELKHEENLFSTAFVPLLLKVEDGEIWKNENPSSCHFC
RPLHLQYKKESPILSREEESDLKNQINTLKTFCKVFNIAGRILTFNISYRIDLTMFDNKVVSALTETKSTQSCNVCNAKP
KEMNNIDLLKAKTENDSALGLGISALHCWIKCLEFILHLSYKIEIKKYKPKTIEEKLSVDLKKKEIQVLFRERLSLYVDM
PKTGSGNTNDGNTARRAFKNSEVFSEITKVDCDIIKRLHNILITISCGYPININELDLYCTETAKRIVSLYNWYVMPPTV
HKLLLHSSSISNKLPLPIGVYSEDALESLNKQIRNSRLKHTAKISRLNTMMNQMHYLLVRSDPKISSISFRKHKSYRGKP
LPDEVFKLIVM
>Crypton-1_TC_yr#DNA/Crypton 626-1450 Resembles DIRS1-like Tyrosine recombinases [Tribolium castaneum]
LKEITVVLFRFYKVIAFLKRKNERYTPKKAKILTKEQVETFLLEAPDDQWLLFKVVTIFGIFGACRCDELLSLTPNDVED
TGKYIIVTLRNTKNFTTRRFTITDEECRFQPCVLYRKYASLRPTQAESLRLFLTYRGGKCISLNAGQHTIGGIPKKIASY
LKLSEPELYTGHSFRRSAATMVVDSGGDILALKRAGGWKSSAVAEGYVEDSIKQKLERAKKLFLVPEPTSASSSSKHAST
VSEETSEKFNVSGNQNCNITINVYSREINPVNNE
>CryptonF-1_RO_yr#DNA/Crypton 1040-3266 via genewise with CryptonF-2_TS_yr, 2 introns (1235:1305, 2464:2528) [Rhizopus oryzae]
MSHDSNAGPSTRDNDIALPDAEHYEDMIRARLAMDKNTQMVIAENQTYRPKNTTAAYKSKQREWFEWCANKEKVADGTIV
YDAKLAFFLKDYVLTRGNKFKKNADGSPAPLGRESVLAYVKAVVDLYHQQVEAGFNKHTMARGPIVKRFLDTHTKKEARR
KRTEYEDRGKNTLNDGYTDQELLRINQYFLIQNNIFSLRNKVCFSMSHAMLMRSETALGTQLPDLFIMELKNQGPSTCFA
IVATITFGKTNKDGKIQYGSALRHRDVEVCPHGAFAQYFFSLFHHQNLPFPNFSTRRDWYDTYLFPNTTGDGSITYSEQA
KIYKQVLRYCGVHSSKLTHINRKSAINMVANEGVSGDQQRQVGRWGSDRMVGCYLSGLPVDAIKVLAGFTTRKGDYFINR
GSIEPSEELRKMVFPWIEYWREKFYGKEVEDDIAGPNFLDLMDYLRTVFLQDSVVLKGKYPGSFIWSHSIFDTDIYKDYE
ERLSSAIAANDEKFKMSQHLEVLLPEVAAAMKTGFDSMNAMLNIVQSQNQLTLNAVKQLEAENRTMLADSFLQISNMLRQ
GDENTQIQQTSTILPSSSVPLSSIPSPSAANSRGLPSFKMSRSLISVTDVWREYSVGLAGKPSIKSMEEQYGADWRKVDN
RTESRFFTRRLPLYKKIESLSNERGISCEEAAQFLEFRRVSDKLSINQMCKLVADNQI
>CryptonA-2_SP_yr#DNA/Crypton 193-1536  [Strongylocentrotus purpuratus]
MAAAAFKVPTFEILSTAQMQELLNGTDSASTKKSIKFGFAKFEAFLGLKQIELGEITTDRLRLDDVLCTFYSSLRREDGS
WYSKKTMQVIRYGVQRHFLDLHNFDIRDKATFSQSVRMFKAVLVKLKKEGKGSTKHKPAISASDMEIIQNSSVLDCDTPA
GLQNKVFVDFMTYFCNRGRENLRELKPDDFRLETDEDGLRYITKRDQLTKNNREDDDEVSNNGVMYEIPGSSKCPVESFM
QFVSKLNKDCPFLWQKPKAKKPEDGDNWYCNAPVGKNTMGNKMKQISQKAGCSKLYTNHCLRATCITTLDRAGFESRDIQ
SVSGHHSEQSLRNYCNTSHERKKQMSSHLGSHLYEKRNITLPSATQSVPDPGPGPGPSRPNRAYSMHTTRQPLEIVVPDR
DSDNVDVHVNSHQQLSFSLSQEKVHQDLSTTSNTFQIHDCVVNIYNKP
>Transib-10_HM#DNA/CMC-Transib 1343-3028  [Hydra magnipapillata]
MYFFIIYSVPCRVPKSSAVNTSCTPKPRKSFIKLTNRMKRKRTDSLREREVEELQHAVKRFKSNSSTDGRAILYGSNLSL
QALCNLKLTDRTWTEFKNIVTHNRHLVPPGLTKLKQYKKLTYPEQVEYSETEVKCSLFHMIKHSVSRVFEYLLDYESNCI
MSLSQEERDNVQIICKVGGDGQSDQSEFQNSATMKRGVDDRSVYSIVFVLLEIRSGEKIIWKNLIPNSPDATRHLLFCFA
KETASFIQEKFEHLKNEIFLLKNIEFKLGESTFVVKSSLSTIYTTMNDGKTLNAVVSNMLKKRISSQSCHVCLANSKEFN
LKTIWKKNINLNKHVLKLGICSLHLWMRCMEWIFNTACKLPAVKQGRNIPSQKSKEFIENKKKFQHLFKIKLNIRVSFVR
KGCGTTNTGNVARKFFNNPIVTGRILNLDIRMIKLFRDLLIDINRTTTRPDIKVFKQKSEHLFALITNDKFLKTIPMSQS
VHRVIVHGTSFIRYFKYPIGSLSESAIEARNKENKTARIGHARLTSFAENTRDTANYLFMTSDMYLFCKKNKMDKKRVKT
K
>EnSpm-13_OS_p1#DNA/CMC-EnSpm 6392-9004 (may have more exons) [Oryza sativa]
MLVDRNWMYKGHRNRGEVTAEWILKTTEFLDMAFSRDTRCADVLCPCNYCNNTRPQTRDVMMKHLCKYGFRPEYTVWVYH
GETHPTCEEVVCESTEDEDRVVDINRMDDMVDDIRDAYVSVEEEDPEPTAQSFFEMLSAATKPLHEHTQVSQLDATTRLL
AVKSQYAISIAGFDALLNVVCALLPQGHKLPPNLYEAKKFLSALNMPYEKIDACPKNCMLFRKENEHKTHCDKCGESRYV
EVENSKGQKRQLTVARKVLRYLPIIPRLQRLYMSESQAKQMTWHKTGHRYHPDKIVHPADGEAWKKFDRDFPAFAMEMRN
VRVAIATDGFCPFGMGASSYTCWPMFVIPLNLPPGICMRQHNMFLSLIIPGPNYPGKDISVFMEPLVDELIHAWQQGVLT
YDRATKTNFIMRVSFLYSIHDLPAYGIFRGWCVHGKMSCPICMEVLQGKRLKYGGKYSFFDCHRQFLPSDHSFRTDSNSF
MANTTVSTEPPRRLSGGEIKAQLDSLVLAPNGNGFVDYGKSHNWTHRSSLWRLPYFHMLVLPHNIDVMHNEKNVAEAIFN
TCFDIPDKTKDNVKARLDQAALCNHPELNLVQKQPSGQWVKPRADFCLNRTQKKEILEWFRTLKFPDGYGSNLRRGVNLK
NMRINGLKSHDYHIMMERLFPVMFRGYLPTHVWEVLAEVSFFYRKLCAKQFDPIEMENMESQIVVLVCKLEKIFPPGFFN
PMQHLMSGPVQFRWNYPVERGQKYLKSKVRNRARVEASIAEAYILDEISNFTSIYFADQVRTIHNPVPRYNVAQSTDCSL
SLFSIKGDSTSRGVPRHLTAEEWDATMLYVLTNLTEVDDYIRYEVYMGCILFIAACNFTFCLSFYLAGSL
>EnSpm-12_ZM_p1#DNA/CMC-EnSpm 993-3527 (may have more exons) [Zea mays]
MDRRWVYGKQFTPAYVKGVEEFMNFVTERYPEDTDIRCPCVNCLNQRLRPQSEVETHIHIYGMSATYTRWIHHGESADTE
VEGIEEDVEGYDNDFGIHMDVDDDVYDDDHGVPEMIGELFAAAEADGEEPRFAGVLGDSKKALSPGSSHSKFSFMVRMLY
MKSRYRISNTAFSAMMKLMSDGYPNSELPKSYNEAMKYLKELGLGYENIHVCKNNCVLFRNVNAKLNECPVCTESRWKDE
TGSKRVPHKVLRHFPLLPRLKRIFASKQTSEETQWHKKVRKPVANVMSHPADGEAWKDFDRKYPGFANDPRNLRLALATD
GFNPFGNMSTQYSMWPVLVTPLNLPPWECVNPTNCFMSLLIPGPRCPGKDFDLFLEPLIEELLKLWKGVKTYDACTGRKF
DLRAAVLWCIHDYPALATLSGRTTKGYYACIYCDKNPLSMAIRNKLCYIGHRRYLKRTHSWRNSLDFNGKRENKVVPGRF
TVDEVLQELEKVKDVRPGKQADITGNKRKRSSDGPKIYSRKSGLWQLPYWKDLMLPHNLDVMHIEKNVCENILCTLLSIP
GKSKDTHNARLDLYDMGIRPELHLQQDGNSACRAPPAPYVLGKDQKVEFCKFLKGIKFPDGFADNLARYISEDGSKVVGK
LKTHSCHILLQRIIAAGLRGLVRKDVYEAIAELGTFFRELCSRNLRIDVVQRLKGDIPLILCKLEKIFPPAFFDVMVHLS
VHLPDEAMLRGPVQYGWMYPIERRLGTLKNFVRNRARPEGSIAEAYMASDTLTFCSRYMKDVDTRFNQDDDSGTEMPLPN
DMSVFKHGATLVGGTKTEYIDDATMNKLVWYVLHNADEVQEYLT
>EnSpm-13_VV_p1#DNA/CMC-EnSpm 2757-5225 (may have more exons) [Vitis vinifera]
MDRSWMSKDRRSKDYADGVESFIAFALQHSSYKNSIKCPCLQCGNMIFHTSQKIREHLFFYGIDQSYHTWYWHGEAAPSG
PPTSRAECHHKVQFNDVDSTIEMVQAAHDDCKNDPELFETLLEDAQKPLYPGCRNFTKLSALVKLYNLKARYGWSDKSFS
ELLRILGDMLPLNNELPLSMYEAKKTLNTLGMESEKIHACPNDCILYRNELKDASSCPTCGTSRWKLDRTRTKKRKGVPA
KVMWYFPPIPRFRRLFQSPKIAKDLIWHAQEREFDGKMRHPSDSPSWKLVDHRWPDFASEPRNLRLAISADGINPHSSMS
SRHSCWPIIMVIYNLPPWLCMKRKFMMLSLLISGPRQPGNDIDVYLAPLLDDLKMLWEVGVESYDAHQQELFTLRVVLLW
TINDFPAYGNLSGCVVKGYFACPICGEDTYSHRLKHGKKNSYTGHRRFLPCNHPFRKQKKAFNGEQEFRSPPQPLSGEEI
LRKIDVICNSWGKNKITRGKLNVKTTNCWKKKSIFFDLEYWKYLHVRHNLDVMHIEKNVCESIIGTLLNIPGKTKDGLNS
RLDLMEMGLRCELGPRFESNRTYLPPACYTLSKVEKKVFCQTLSQLKVPEGYCSNMRNLVSMEDLKLYGLKSHDYHALMQ
QLLPVSLRSVLPKHVRHAICRLSFFFNALCSKVVDVPALDKLQNDVVVTLCLLEKYFPPSFFDIMLHLTVHLVREVRLCG
PVYLRWMYPFERFMKVLKGYVRNRNRPEGCIAECYIAEEAIEFCTEYLSNVDAIGIPISANIDQKVGAPIPGGQVVTVDS
NLWLHAHHYVLENTTIVQPYIE
>Transib-8_DAn#DNA/CMC-Transib 758-2589 via tfasty with Transib-1_DBp, 1 frameshift. [Drosophila ananassae]
MQKKIRRVTSAIEESIKHKGYAVDMTTLSNCISYICKKNCTFWAKYNRFKNSIVKHQSNWLNTIETIIIEPPQQGIASAE
RGRPKIDFAESSKRTKRRRIALLEKQDESAASVLRSSYFQPIPKSSETNMEKVSSLLMDTGITKHQYLLIREFINSEASC
NILPSYEKILKFKTLRYPENITVAETYAEVELQSLLDNTASSILELQKTVTENCLDGTENTLTLIGKWGFDGSTGHSEYK
QKFSNCNDDDRCLFVTSYVPLQLISESNSKIIWKNPRPSSTRYCRPVRLQFKKETATLSVEEELYFKNKIDNLKPTEFES
PNKKLFINHSLQLTMVDGKVCNALSNTSSMKCFICGAKPTEMNNIEKCLTKIADKKYYEFGLSPLHSYIRFFEYFLHISY
KLEIKMWQARSAEQKLNVLQRKERVQAQFRDKMGIIVDKPRDGGRGTSNDGNTARKFFGNPSLASDITGIDEEVITRCAT
ILQALASGYSINAKKFEIYALDTAKQLIKIYPWYYLPATVHKILIHGAKVIEHALLSIGELSEEAAESNNKEIKKCRLQH
TRKMSRILTNTDLINTLLLRSDPFITSQRKLPKRDKSNFSPSTFDLLEDIC
>SPMLIKE_p2#DNA/CMC-EnSpm 6830-9443 via genewise with EnSpm-4_HV_p2, 1 intron. [Oryza sativa]
MADRDEEQILYDTIAEGSSQYWNEEEGNEDPNQYLNEEGNVERDAEGNQEGHVERDVEGNQEEEASGSQPSVGQKRARGQ
RGAAKKLEGRHIITEVEEDGRPSAPAEAAKNYVRHSGWVVRDNVPVSTVYWRRTRARGDHESFVPDSEKEMLWTTMLETF
TLPAGTEDKVKRWTLKKMAEQFQSFKGELYKKYILKGQTPNFDTFPKLRDHWDEFVAYKTGEQGQAMMERNKENAAKKKY
HHHLGSGGYSVAMPKWEEMEASLLERGIEPATANWPERSKFWYYAHGGTLNPADGSLVFGDQIREAARRLTDAVEASSQG
TFRPDRERDELSLALQTPEHPGRTRGKGVIPWKIGFKEDIHTYRSRMRSKRDTEAKIADLEFRVSSYELSMQEEVARKVD
ERMAAHRSHDPQPTIPPAMVSPSGNRSSCASTGQVGSQSMDAMQTQDESTCPVDDITQRTPCELHIPFKNLSIKVASGMA
IPTDPSGTYHCRPIPAGYSKVEVELVEGAYEDLELDYPGGDGETHLRDTSHAIILWRRRYIILPGRQAASRAPSPPAPPS
PPQDPAPSPPHAPAPSPPQAPAPTPPQAPAPTPPRAPTPTPPQAPLPAPSKSRAPQAPPPAHTRATKKAKVDAAKNKDPG
YDCTQEELDAYVASEVKRQFKPRSPEKKIPIDPSVRNFFRGMSAPAKEAIKLSDYERTLKKASSGKSKPVPQLGEQPNQE
IEPLVTGKEMTIEEFITDTGLTTDQLLGVAPIEKAEVKYMYELGKPLVKPELLQSLPTQMYKFHQLYMEMSATGREMIGA
RIRDTDFLQGDDILWINFKGIYELYQLDALDVSIMSCWIL
>CryptonF-2_CGlo_yr#DNA/Crypton 580-3073 via genewise with CryptonF-1_TS_yr, 4 introns (628:693, 896:1006, 1676:1742, 2508:2708) [Chaetomium globosum]
MTCDLCIHFSKQKEWKIWCRSRGFASIPEGWPATHVPGRPLPEDLVDEGKLLLFMADEVVSRAPRTGSRVAQERRKRRET
EQADSGDVESSFESSLKLQYNTVRSYVSAIQKLYDVQRTRGINPAPRPQSVALKAMQKSILRTTWARKRSEYADRGENTI
KDSYTPSQIPVHTSAVWNESKQIACALRTQVYFLLGNHMLLRSSNRRPLELPDCFCLELPNEGVKNKDNITRAFVVVMNQ
GKTNQHGRLEYGACLRHRDPLACLVGALGFWLFYRWHVEKESFPSFSRRKDWYDLKILRRSINEPKDVLTPQTANDWTRR
FYEKSGIKTTKASHAPRVASSQNADIAGVHEGQIRRAGRWNNGDQMTGCYLTSLPLEFMRAVADFDPEWSGSYFIARSTA
KPPGRLLARVFPGLDYWKEQHDAPESSPFAATVQQDKAAGAFLELLAWLREVVLQDAAFLKPLFPNHPIFRDPLFQDPEF
EQYAARVRDICSQAHEDSHQTAIEKTIPSVAEKLRSISTQQVAQNALNQRRHEETVQALRKLERKLDLLANTRYTVTISP
EVSPSKAPGVAVVGPEDDESPPRFRFPQSVRTVMELWRLWRHGLPPMPSIQSLEERWGARWRARGDRQYFSIRRRIFDEI
VRRSQARDQPEEVSAREMDIERGKISLDKFSKALRAQRGQGTG
>CryptonS-3_HAra_yr#DNA/Crypton 268-2406  [Hyaloperonospora arabidopsidis]
MILPICSLETRQICVCQYKPQVKGVSFAYLRAVGLQMSLADLQPGNSKRARATAVKAFLRFLQSENANLEYVKGCIQRDE
SGQCFVSVMDKFGMHLAFHEGRAGKPLARHSCMQYYRQTKHWLLDQFPQQRAILDSRLLKMGRTLENYCVKREGGGFVKK
ANACTKTDLRRMMYYLYLNACSSSDYQDAALLCLLWYLFGRASDLTLVRKQNVSIDASDVFFVRFIRMKTCEEQGLSIFP
TDDFATCPLHAIALALITQAAPCADLLDNLPAQPVNTAVRFGPETPLLDVLDHPEASCGLQSAAASGKDISPTIHSHVNR
LLDRVATLARVEQQLTSHSFRRGGAQHANSCAQLAARWIFDRGAWNVSTTNKAFNYVFNTMNEDHKVAKVLSGWKPNKSV
SLADLRLFDAQTQDSIREVQALLFATCQSLSAKKYNVSQRVIDVLTAYLILHFPLLKEANPNGPAVKRLETCVLESGSTL
ADLLAWSTHLATATCTEVHIEEEEEEEEEEPANKPSTESEERKIIRHQASVIEHFIQNAKRQDERMDALEAKLDESRTLI
KNKRREEDENVSKSTKHRKQSSLTHLHSVWFEWYARTPRLWSAHGEKQKKSDSKLLAAFLKLFLETGFTLDEQMPTYRND
VLELGLQSEANILKFLGERGIHSKGANAVLKQMRALHRAGELNGKIQRYRSLLWSGAIVDPAPGFTQDILEEV
>CryptonS-2_PU_yr#DNA/Crypton 230-2305  [Pythium ultimum]
MELQSAALQRTGARTEQQRRTAKKHFSQFIQEHGEEKVRGFSCDSIPPQFVTPQLIGCFGSYLFMKMDKVSAAQSYLSQI
KSYFDTKWQDNVEWILHPSRSNDKWYSDIRSGVRRMYINRAIAEGSALVDQAPPMYRDSLRQICAMLVANNTSMSLRERD
LLVTQWHCMGRAVETGLRHSSMKFVPKPIGALQFIVGRSKTNVHQHVHAFCDRESWEADIFHAKASHLATCANVDDEFQF
RNVTAKMINTILSNVCGQAGAEELSKFTSHSGRRGCASEALSHNGVSVTEVIARGGWAFDAVSRVFLYFCGRDNGDMRVG
RVVAGWPETDKGGTPPNANSLTEVDRTSFRALAMELYKQYLSFYDASILEVLTASLVMYYNDVKHKWAKMDREDVLLLLT
SIEAAACRVGVSKHDLSNWSTTLRNRWIVDNLPWLPIEQQAETATKDDHEIRIGTYSFHDVLTRQASVQHQSTVMLAKLQ
QAIETQNTLIQQMGTQIAAMSTELQLLQRSHLALAMRFDTGVAKAAPAICSHQAHDATAHPPANKXSCSSSANSTRSFAQ
SLKGVRASSLFMEYMCNRWYAGMPAGNNEVVRKIKLIVERVKDFLPAGTVLTDPPPAGSSHFKQWYVELEESAKLSERSM
ISYIDQIRTLPRKRERNQLFAHLVSKDLANATAREDYPKRQCLDNMTXGTNA
>CryptonS-9_PI_p2#DNA/Crypton 2316-2969 Contains CHROMO domain also present at the C-terminus of retrotransposon pols. [Phytophthora infestans]
MWFRPRNYVQLNLRVTPSIDCICRLNPLILSLIFLSXSTRIMPSIKPVKNAISSTREFKKLCVSASKLNKIRVSDEAIRH
LRLTMNTTIASPALLPEAIDVVISSLAKQKKRRFGLDDVRAWLVPPSADDDLSDSEADQNAEEKLDGEKQHYVRKLLNWK
RENRRTYYLVEWEPTWEPRKHLNRTVVAAFEKERRLLVRKTFIEDEAVEDNTLNNTEA
>CryptonS-10_PS_yr#DNA/Crypton 301-2463  [Phytophthora sojae]
MQRAPRGLDIPQGTAGQEAAAMKCFSEFLALANMNEESIASIAKSLSIPDALPSQNFYSLLTAFSIFLQTKPSARGGRLA
KATAVGYMSQVVNLLRERYPLYLSDSKRIAKIRDKMGSTIEERNLLAGVQTGEAPGCTLSDLRVLVQETAIKGVGSGYKS
LHDAAVLTLMWHTFGRAIDTCFARKSQLSMAASGELFLHLARIKTSVVQGISIYKAATHWEQCMLHGLGMLFVGASEPSS
YVFPLVPHAAASDLPGEKTYSQDEAILYWENLEEKAEPRNEPPTKRVRGRPNVSKYINDVITMVCERQAQASAPLPPTLT
AGLSSHSLRRGSAAYANASPQLAIQWISTRGAWLLDSLTKAFAYVGTTTREDQSVGKVLAGYRDPHLPCVTPTIATLSEL
LPALEYAQLLTLRGQLFKNVSGFTDTTLNVDALVLDAALASLLIHLDDVATAVQQEQAATGFTSHYLYRFHEALDATNVA
LGARLSLDTCIGWGRQLRTAWQTENFGQLGERSNGNTTILAAAVTQMLSSIAAMQRTLQKLVAVHESKSTSADGPAPCRC
AGQAPQASTDTVVEAHSLAGCFYNWYTLELWHTATQKKQQFVRADLKAGVNIMIIAAGREVDVPTAPLDRDGVAYRLWKQ
RVWTLAEDLDKKVNAALGSIDGKGRSKTAGSLRKRWRKLRVDHRSAYDALCSAFITRKANGGIVDRCTPASHQWKQKDLE
S
>CryptonS-9_PI_yr#DNA/Crypton 290-2332  [Phytophthora infestans]
MSLKDLAPTNTKRARESAARSFKKFVEDEGVTWDYLEASMQRENAALILATVVDKFGMHLAFKEGRKGQLLARHSVMQYY
RQAKNWLLEKFPQHRAALEKTLLMKGQVLERYCMKRESGVFVNKAPACTKQALKKMLVYLYSTAVTSADYQDAALLCLLW
YLFGRASDLTLLHKTNLSVGSGDIFFVRFIRVKTSEEQGLSLCPDDDFATCPLLAIALALITQASPSVSLLNQLPEQQAR
AHTSLTPSAPLIDLIDHPEDVAGAESMQNTDSETKATEAASGIHSYVNRVLERVAKKAGVTERLTSHSFRRGGAQHANGA
GMCVQWIFDRGAWNMTATNKAFAYVFNTPSEDHKVARVLSSHDPETPVHLLSLDIFDSDTQLKIQSVASALFVASCGLET
SQHNVNDRVRDTLMAYLLKHYPQLKTQASDSPVIQRIEACTRAKGFSCNDLLSWSSYLARDPRLSDVKQSAAVQETSTDF
TKHPMYLHQASLIEQLIQVNQKLDMRLSVMEAKVYNKQEKKRTSIEISQDADTNTPPVKRRRTSGAVRLKDAWFTWYAQE
PRLWCSTDASSKHMRSTNKQIVAFMKLFLPDGFVLNEKLPQYRDEVMRQGTRAEEALLTYLRERGITARGAQNVLKTMRK
LHKSGHLNDHINRYRRLQAGGCIQDPAPPHTTNILDVVSTT
>CryptonS-2_PS_yr#DNA/Crypton 355-2484  [Phytophthora sojae]
MSLSVFVPTNTQKARTTAINAFERMLEVEGVSMELFRASMHTDPSGKRLAATMDRFGYYLATNDGKKGKLARNTATSYYR
NVKLWLFDEFPHLRLPTEMNLLKQGKTLDKHCLKREKGGLVNKAPPCTKEDLGSLIRYVYSTARVNSDYQDAALACLMWH
CFGRSSDLGYLRKQHVSVSADGVFYLRLLRVKTAEEQGLTLIPDKEDFLTCPLHSLAVALVMQAAPCAALLSQLPELVAT
SEEPLDPGVPLQALLEAEPATLRVALMPPSPAVAAPVPAPSPVPSCSSSPQPASTEAQVSSTTKASAGEKTRGEDGVQAY
VNRLLKRVAEPAGATTDLTSHSFRRGGAQHANGDDRLAAQWIFDRGAWDMSKVNKGFAYVYNTPREDRKVARVLSGWEAD
AAPVVLDAAALDHGAQERLASLREFLFSTCTGLKEHSLNVSSKVLTVLTAYLVRYYPQLKALAPDAPIVERVEECLASAG
ISTADVLALSVALNEQASPAEPVAEQAHESKTHSCQVHHHLLAVIDELIASNRALSARLTIVEAAQLKCKRKQVPDEEPQ
TQDTSDQEPKPKRRKKATTNLSSAWFEWYTRVPRVWDSADRQKKSEFRHVTAFMKLFLSEGFTLDPKAPDYKDQVLDAGR
RAEKAVLAFLKSRNVNAKGAGSVLRALRPLHKNGVLDERIAAYKTLRAVGRIVDPAPTETQDVLATVGHV
>CryptonS-1_PI_yr#DNA/Crypton 268-2304  [Phytophthora infestans]
MGLEELQPGNTLRAKATAVAAFSKFLKGEDVEEEYVKKCIEEDESGKSFVCVMDKFGMYLAFSEGKKGKLLARNTAMQYY
RQAKIWLLEQFPQHRASLESRLLKMGKTLDNFCLKRDGGGFVAKAPPCTKADLKKMVVYLYVNACSESDYQDAALLCLLW
YLFGRASDLSMIKKRNISIDAARVFFLRLVRVKTSEEQGLSLFPDADFATCPLLAVALALSVQAAPCPALIGNLPDQVQQ
TPTTLSPDVPLVELLNAPPATSGLATPAPPPPRTAAAPTIYAHVNRVLDRVAPAAGVSAALTSHSFRRGGAQHANGCEKM
TARWIFDRGSWNLSTTNKGFNYIFNTSREDHMIAKVLSGYKPEDVVPLQDLSSFDADTLDAIAEFQRVLFAACYQLETES
FNINRKVLDVLTACVVRHYPVVKGLNPNSPAVQRLETCVTQAGRTLPDLLAWSTHLAGAQHSCKDNIEASTSPSMPMEPS
QEQKIIEHQASVIKHLIENSKRQDARMDLLEAKLNGDPVAETRKRSIQDEDATDVSKPKQKQRRGSATYLHATWFTWYAQ
EPRWYVEAPKQQRSKAKLLVAYMKLFLDDGFVLSQTSADYRDRVLELGKRAENAVLTYLKGKHSINSRGSSAVLKHLQRV
HCAGALNAKIQRHRQLLQTAAIQDPSPGYTQDVLEEVSK
>CryptonI-1_AA_yr#DNA/Crypton 312-1622 via genewise with CryptonI-1_RPro_yr, 1 intron (723:779) [Aedes aegypti]
MSDSDSDVPIDIESAAEVALAGLLPEKSKTRYEEAYKHFNEWCIKNKIGKVDEKCMLAYFSHEMKHQKPSTKWTRFSMLK
STIRLNIGVDIGEYKNLIAFLKRKADGYRPKKSKIFTKKDIFDFLKNASDDIYLAVKVAMVVGVCGACRREEITKLTLND
IEDMGDSVKITIPNTKTKILRQFVITAGNAPGVDMLKLFRSYRQLRPADTNHLRFFVCYRSGKCTKQPIGINTIAKMPKI
IAEFLKLPSPADYTGHCFRRSSASLLADSGVDISVLKRHGGWKSSTVAEGYVENSLQQKKMIAEKIMGVPDENTTTESVL
PSTSTVPHYSFAVPTFAPSTSATRSSAPSPVQITAAEVMEFPADDSSATVGAENIPFSATAATHSFEVPTFAPTTSNVPN
PVQINNLTNCVINFYQNK
>CryptonS-1_PU_yr#DNA/Crypton 226-2193  [Pythium ultimum]
MSLSALQPANSAKAANVAVNAFMRFLSSEGMAWENAKRHVENDASGESLAAIMDSFGMYLVRIEGKQGKLLARHSVMSYF
RQVKNWLLDQFHRQKALVDDRLLKMARTLERYSLKRESGGMVKKANACTKEDLELMMLYLYKTAANPTDYQDAALLALLW
YLFGRASDLLLLQKQHVSVCSRNVFFLRFVRVKTAEEQGLTLFPDRNFVTCPLLAIALALATQRRASPSLLDHLSDVQHE
EGCDALPASISLMERLLGSAAAVDGTKERAASAPGVHSYVNRLLRRIAAKAGVSKPLSLHSFRRGGAQHANGEPDVSLQW
ILDRGAWNLSTTNKAFAYVFNTTSEDXKIAKVLSGWRPGDKAATVDLGFVDAATRERIRRFQLLLFPACQGLSTAAYNIN
ATALDVLTAQLLLHYPHLKALNEASPGVRRVEECAAQAKVEIAELLEWSCALEQQSSACEHKEASKEESNIDKALQRQMA
LIEQLIDQNKALSKRIRAIESGNEPTEETPAAQEVDKAVSKAPKRARKSPTTHLSDAWFEWYTSEPRLWVSGDPKRKSLL
KQAVGFMKLFLVDGFALNESAADYKDRVLEYGQQAENEAIVFLRTKRIESRGVGAVVRHFRELQRAGHLDGAVRHYRSLV
AAERIQDPAPSHTNPQ
>CryptonS-2_PI_yr#DNA/Crypton 279-2315  [Phytophthora infestans]
MGLDELQPGNTLRAKATAIGAFVKFLKEEEVEQEYIRKCIDSDESGKMFVCVMDKFGMYLAFKEGKKGKPIARNTAMQYY
RQAKLWLLDQFPKHRASLEARLLKMGKTLDSFCLKRDGGGLVAKAPPCTKDDLKRMMLYLYTYASSESDYQDATLLCLLW
YLFGRASDLAMVRKHNMSVDAGDVFFLRLVRVKTSEEQGLSLFPDTELATCPLLSIALALILQAAPGPALVSNLPEQAGF
AGSTLSPDVPLIELLNAPQVTTGLAAPAAPPRVATAPTVYAHVNRVLDRVASAAGVDVALTSHSFRRGGAQHANGCDEMT
ARWIFDRGSWNLSTTNKGFNYIFNTSKEDHKIAKVLSGYKPRTAVPLQDLTSFDTQTRZAMDRVQRVLFATCFELKTDSL
NINKKVMDVLTARVFRHFPLLKDLNPTSPAVTRIEAAVDHAGCSPAELLAWSSHLATPSATCEDTKTGNAATHNDDEQPR
ESSEXQKTIDHQAAVIKHFMEHIKRQDARIDALEAKQNSEPTPRKRSCPEEGTDDVSTLSKKQRRGSPTHLHATWFAWYA
QDPRWYALAPKQKRSRAKLLVAFMKIFLEDGFVLDQDADDYRDCVLEVGKKAEEAVLTFLSGEKKISSRGSSAVLKHLQA
LHSKGDLNDRIKRHQXLLQSAAIRDPAPGYTQDVLEVKD
>CryptonS-2_HAra_yr#DNA/Crypton 342-2390  [Hyaloperonospora arabidopsidis]
MSLTDLAPANTKRARENAARSFLKFLEEEEVTWEYLRQCMQRERAPLALEAVMDKFGMYLAFKEGRKGQLLARHSVMQYF
RQAKNWLLEQFPQHRAVVEKNLLKKGQTLERHCMKRESGSFVNKAPACTKSALKKMMDYLYSTAVTSADYQDAALLCLLW
FLFGRASDLTMLRKANLSIGSGDIFFVRFIRIKTSEEQGLSLFPDEDFTTCPLLAIALALVTHSSPTISVLSQLPEQMAI
SQSILAPATPLIDLLDHPEVVVSSPDIPSTAAKKENSPDTAPGVHSYVNRVLDRVAAKAGVSERLTSHSFRRGGAQHANG
AGLCVQWIFDRGAWNMTATNKAFAYVFNTASEDHKVARVLSGRHPDTDVSLLSLDVFDSGTQTKIQTVATALFNASHGLM
TTQYNVNERVIETLITYLLLHYPSLKQLKKDGLVVTRLEACVIQQGHSVSDLLAWSSHLTCYTKTSMQPNPIKAQDSTID
ITKHPIYLRQASLIEQLIKVNQMLESRVSMIEAEVYNKAHPKXTHERSEDKSKEPPAKRRRTSSSTNLKDVWFSWYTQEP
RLWDSFDSSSKHTKSTAKLVAAFMKLFLANGFVLDEKSPQYRDDVLEFGDVAEMQLLSFLGEHNIKARGAQNVLKSMRKL
HKAGHLNKHIQRYRQLQAAGRIVDPAPAHTTNIIGSIVTPQYP
>Crypt1_tp#DNA/hAT-Restless 222-3239 [Cryphonectria parasitica]
MANSNAFNQLSHARYTSIQKQIDAHDATAQFSLGTLKDLPRIKVPGRSHAFVPARWMPTSSAKRKRHGSDIWHFGEKLFE
VIVQADGTCKVAADWWFCRLCDQNNRQTLYTTRNSISTSTSAALKHLEGRDNEGHNLGKLKELVAEAEKEEVSPEELGRR
KRRRINHRGLFNNSSLYTAPDALKDAANAPTRAVVSLAKKAITELVACCDIPLSTLEAPQFRQLLMVWNSTLTEHFFPRS
DGTVMRWLFEAFHENLAGLQLQLQREAISKIHLSADLWTSPNHKGILAVVAHFVDSDAKLRNRLIAVRMINGQHTGENLQ
WHLHQVIMAFQLEERLGWLTFDNDSTNDKATRLLFRKMYGFNHREAEKLRIERRCRCWGHIINLIVKGFLSGNAKQILEA
EDSDADEVSRAVLYLPGLLLIFKQELEQQRNQWDQWQREGPIRRAHLIVVFLKASVQRVQDFEKIVQNSLFSPEDQDLED
TTAFLAEALPQPTAQDLTMPPPPLPTDPTDEQTGDISTLRPVVAQETRWNSTEAEISRLLRLKRPIDFWVKEQVRSGAKI
QPLSEQDWRVLEATRDLLQPFLWHTKHHEGNAVAVHDVLSSLWDLEKHLRSFQERFGGRKTYAEEEILEEIIVSPNAEKP
ALQRPSSRYQAPSRPSSRPSPRPSPRPSSRLYSRPSSQRSSRPSPRPSPRSSPRRRASQSSDIFPSTPVREWPDVGSQQE
AEIYPEECGLEGAEFLRESVAHALAILKRYKSKLRECPIYFAAAVLHPKYRLVGIRTAAPAIADDVEQEFKAFYEKYWAY
KDPALSSASTPSLQEDQEHNKPKKQWRTAFRAQPRPKHQRPQSELEKYLQLEEDDEDDDGFEPLVWWAARKAEFPALSQM
AFDVLSIPAMSSECERVFSQGKLTMSSQRRRMKSSTLELLLCLKDWLKNGTLAGPAAEMRRKGIA
>Hoyak3_tp#DNA/hAT-Pegasus 633-2627 via genewise with 54638886_Dps, 1 intron (2389:2450) [Drosophila yakuba]
MAPSEVWKYFENKAVEGLAVCNICKSSLKNNRISNLKAHLQKQHKIHVNVISLENLETSSTSSSKIIRKKIKIEVNKKQL
IRLYIGLVTEDSIPFNVLNSQNMRNILDPICEGLKTAEGKMMKLNAVNCKNTLEIVANNIRTHITAELKNTLLSLKIDSA
TRMSRNIFGISAQYINSAQIKSIILGMIELKGAGSSGAKNLAAEVIKVLNKYNINLNQIVSITSDNGANMLKATNILSFV
SEQNNEENDYECTNDDYLDKIDLIEKIPKVLIGNIEVCRCAAHTAQLVALDVNKSLDIIKYLLNCRNMTKYIRKPSNGYR
EIFELKKLKVPQLDCPTRWGSTYIMLKNLLEAKDILSKIESLKNRTDEKNFDVDASFWDFIETYCNVFSPLQKSIQRFQE
EQLHYSNFYAQWLKLKILTEKIVNDSSHNLTKTIGNKILNSIETRTKTLLNNKFVVSCLFLDPRFQHILSPQQKTDAINH
LKSIWDRLYSLNPTGNMCSTPSSSFNQIDNFFYDEEDEMLEAYLSQGVQSKVNSSIDVYTKIENIQLAYQRFDIDVLSYW
MEXKQYTDQELYAVSNVCYAVPPTQVSIERAFSTLRLVLTDYRNRLSQDVLENILLVKLNPTFLDMAIDTLPLFENEELT
VSGL
>hAT-3_Gav_tp#DNA/hAT-Tag1 1044-3068[Crocodylidae]
MASGRKRDPIWEYFEEIPSLGKKGKRVKCKQCKKEMQGLVARMKHHNENCLLGENDVDEDVDMSEEQCGSTGEKSRVASC
HWVSFSYFILHNTCPLFWNIMAPDHNGDAISLFPILLQHNSAFPREPHPILVFSKNRSASEFNGAYSKIKCTLSAVSLSF
FGNLESDLHPCLNNRVRRTEKNDYSKIIFVSGSHLSIRDFDCLSATTSESSVGTFSSSAATKRISDNKVSVASKRFQSSS
KTTTMDGFVVRTSKYQQDTIDEKIARFIYATNSPFRIVNNKHFIDMVESLRPGYTPPGRADIGGRLLDTAYEKELEQCAR
NTEGKFASLSLDGWSNVHNDPVICACVTTEDGVAYLSETIDTSGNAHTAEYLKEVAVKAVINCEQKFNCHVRSFVTDNAA
NVAKMRRYLEEETEGCSLITYGCSAHLMHLLAKDLSTSPGIKENVVEVAKYFRNNHFASASLKRAGGSKLILPQDVRWNS
VVDCFEQFIKNWPILIKICEENRDKIDGSISSKVSNIGLKRNVEDMLSILKPISIALNKLQRDCCCIADAVEIWKALQET
LKKEIPNQKVKLQAIKKRMDQALTPPHFLANILNPRYKGRCLTSEEDAAAMAWASQNHSSVMPVIINFRAGGEPFKQYMF
TDDVLNKVTPLNWWKSLARHLETEFLQLLSQLFTAVASSAGTERIFSSFGIIHSKLRNRLGVEKAGKLVFLFQSMNKNDS
GSGEDEI
>hAT-5_PTr#DNA/hAT-Tag1 1130-3584 via genewise with TAG1_tp, 3 introns (1600:1668, 3042:3110, 3316:3412) [Populus trichocarpa]
MSSHDGSTPSSDPSTAQSSQPSISMSSGSRGRTDLAWGHCREAPELSVGCKKTKLxCLYCAKVFAGGGINRFKQHLAGAK
GEVEQCRKCPPDVRHQMLLNLKGNAETKKRVREMQADFNPFNAQQREHEEMMIRQLEDDDDGDDEEDDEDVNTKKHIYGK
QKKSATLGTYFMPRTTPGAQKSLQNCWQRKEAVERCDLALAKWMIDACVPFNAVNSVYYQHAIDAVTAMGPGYKGPNLHA
IRGYYLAKAVDEVKIYVETYREIWKKTGCTLMADGWTDQKRRTLINFLVYCPKGTVFLKTVDVSDVSKTARLLYQLFREV
VLYVGVENIVHMVTDNAANYVAAGKLLMEEFPSIFWSPCAAHCINLILQDIGKLQSVCCVVEHASGITKYIYNHCYPLYL
MRKFTGGKEILRPAPTRFATNFIALQSILAHKDELRAMVTSREWVSSAYAKDSKGKKFVESVLDSLFWEECAIIVRMSEP
LVRVLRMVDGDDRPSMGYLYDAIHHAKEEMMRRFQKRKARVKPFIDIINNRWDGQFYRNLYAAAFWLNPRFQYDANIMDK
HMSTISGLLDVLEKYAHGNLPLQSKITSEMKLFRNAEHDFGRASAINNRTLMPPDEWWMTYGTSAPNLQQLAIRVLSQTC
SSSGCERNWSMFEHIHSKKRNRLEHQRLNDLVYVHCNLRLKQKNYWKGRNYDPINVETICDIENWVVEDDPSILTTEEAE
SFHQALSTMTIQDTLDDGN
>hAT-5_Crp#DNA/hAT-Tag1 814-2899 via genewise with hAT-13_AMi_tp, 1 intron (1007:1295) Includes old hAT-5_AMi. (should thus be _Croc)[Crocodylidae]
VWEYFNEVPLPVGKTGMCAKCKQCNKEMQGLVARMKQHHEKCSFSGGSCFEDDEWNMSEHAGSPGGSILNIQDSDYPSST
SSLSTVSELSANDTSVPVKCMSHSISPVAKRKKNLHHPETTIDKFVIRTSRLQQEVIDEKIARFVYATNSPFHMVENTHF
IDMVQSLRPGYSPPNRADIAGKLLDKVYEKEIEQCAKSLEGKIVNLSLDGWSNVHNDPVICACVTTEEGTVYLTETIDTS
GNAHTAEYLQEVAVKAITNCEKKFKCLVCSFVTDNAANVSKMRRNLEESEESPKLITYGCSAHLMHLLAKDFSAPEIKAN
VVEIAKYFRNNHFAAAALKKAGGTKLTLPQDVRWNSVVDCFERYIENWPNLMTICEQNRDKIDGTVIAKVLNIGLKRNVE
HMLTILKPISVALNKVQGNRCFIADAVEIWKELSETLKREIRNDRVKLQALKKQMDQALSPAHFLANILNTRYQGQSLTA
EEEELAMTWASSNHPSIIPTIINFRAKGEPFKKYMFADEVLKKVTPVNWWKSLKHLDPSETIEVIIQLLTAVASSAGVER
IFSSFGLIHSKLRNRLGTEKAGKLVFLFQSMNKQEEEGE
>hAT-1_DT#DNA/hAT-Pegasus 532-2525 via genewise with Hoyak3_tp, 1 intron (2288:2351), 1 frameshift [Drosophila takahashii]
MAQSDVWKHFENNIEQGQAICNICKISMKNNRLSNLKSHLLKKHQITFNVSSAESVASSSNSTLKTIRKRKIKIEVNKKE
LLRSYIGLVTEDSIPFNVLNSKNMRNIVDPICEGLKAADGKKITLNASNCKKTIKXVADNIKAHITKEVKYKLLSLKMDS
ATRMSRNIFGLSAQYVSADQVKSVVLGMVDLRGVGASTAKNLAAEVITVLNQYSINLNQIVSITSDNGANMLKTTNLLSF
VSEQDMDEDDETSTNAFYLEQIESVEKIPSVYVGNIQVCRCAAHTAQLVALDVIKASNLIKYLLHCRNMTKFIRKSSNGY
REIFDLKKLKIPRLDCPTRWGSTFTMLSDLMDAKDVVSKIESIKNQSEEENFEVDGSFWEFIEVYCAVFTPLQKTIKKFQ
EEQLHYGNFYAQWLKLKIGTEKIVSETNHELSKAIGTQILNSIEKRTKALFSNKFIVSCLFLDPRFQHTLTVQQRSDAIS
HLKSIWDRLYDLNPTGNLCSTPASSSSNLESEFLDEEDELLNAYLEEGVETQFSSVLDVYSKIENLQLPFKRIDVDVLAF
WKGKQCTEQELYAISNVCFGVPPTQVSIERAFSALRLVLTDYRSRLNQDVLENILLVKLNPSFLDSAIDTLPLFQEVEDD
DAN
>HATm-12_HM#DNA/hAT-hATm 1360-3429  [Hydra magnipapillata]
QRIEKEWKRVTQTVWGRVKSSQKDKLYNEIDVLFDILRCKHIIICKEDPTCSDPKCSHSAISPTCNCPSNLKIPEIELKF
IKAQRLKIGMKSVYQIHCIDKKEHTRLAKQCKRKEKALIFKKLEEKKVELNNNKFFNEEIEVDVIEKANVSSNQFIDTEI
DDGIKESVINTNHFPLLAQTVLRYGTSNREAAAISSAVLVDLGIVNKTNNKLIIDHHKIHRETKKVMEKVQKEDLQLYQS
EEIKALFFDSRKNLTLINNQDKTTLKYYSKTIKMDFYTVTSEPGGKYVFHFSPLKPGVGEKPALMIAKPIADWCRKFDIN
LQYIGADSTATNTGRLGGAIRRIEDLLNKKLTWIICMLHTNELPLRHLIEELDGKTTSNNGFSGVVGKLLNCATLLPVAQ
AFPTITIGKRPVELSKDVIDDLSTDQLYGYKMVLAIRSGNIPIDLIKMECGPVNHSRWLTTANRLMRIWVSVHGLSGQNF
NNLSCLVEYVVGVYYPMWFDIKVRWSFIEGPRHVLETLRLVKMQSQVTRDIVEKYIILGAWFSHSEAVLTTLLCSSIVEE
RIFAVDRILQIRRGFDKGETSVRERTHSSFLNIDAKNLTELCSWTHNVFEPIQTCSFSTETIVDFKVNPMVVDSIPCHTQ
SIERAVKQTTRACAAVYGHDSRDGFIRAGCHHRKLLPKNNTKKNLKQMII
>HATm-5_HM#DNA/hAT-hATm 816-2924  [Hydra magnipapillata]
MKANALFKPPVVIGKKTLMEKIEFSWNKIKDIAHGKASQTHVSFWESKLDQLLDITCCKCEIMLCNELCLKTYSCVDQVH
IKCTCVKEKKIPKVELPWLNAQRKKKGSISKYQMGFNDIKETARQISREEKKMKRKSGVEKKLEMEKKKYKVENDDVVEC
LIEDYSDLKKEKISEDPLQNKIWKKNYMSISHTAEVSIRYDISPAATSAIVTSFLLDLIEAKYLTPDMSYLAVDPMKVRR
AREAIMERVIMSEEKLIDEEPIRGLFIDGRKDSTLVLEQNPLTNKFHMRTIKEEHITVTCEPDGRYLTHYTPPKAIPPSK
PAKEAAFALYNWMVPRAIHESLEVVGGDSTNSMTGSGKDGGLLSNLEQLVGRKLFWSICMLHCNELPLRHIIVELDGPTN
SKDGFTGPIGKALSKVNSIKRLETFEPIEQLEPLIEIPEKVLKTMSTDAALCYKLVQCLSTGKMDINLSKAKCGNICHSR
WLTTAEAIIFLYMSDHTFTGDVLQKFHLIVKWVAQVYFHMWYEIKVKHSIVDGPGHLVTLLRLLKKQDGAYFAHSESLIL
TLLSSSDEESRKFAIKTIKDIRKTSQFGDTAVRSRKKVFLNTEALSIKELIDWEKEKISEPVFTCQISTYDLDKYLVTRF
EAPYFPLHTQSCERAVKEVTEAALSVCGFEKRDGFVRARMNNRKTLPELKSKKNFSNLFITKL
>HATx-2_SM#DNA/hAT-hATx 451-2415 [Schmidtea mediterranea]
MEQTHYENCWQHFKNKPGDKDIAICNLCKKCISCKASQTTGLHRHLTGHHSLKRKAIATATTGSSKSHSSSKSSTLDKFV
TVTTNANNDIETLEEIVAKLAAKDGFSILAITKSEFIRKSIKKQGFSLPQQPSDVMNLVYKYYSFVKDKLVFKIKSLKEQ
NYKFSLSIDEWTSFKNRRYLNVHLYSGKLDSVNLGLIPITGSCPAEKIIEMVNSKLESFGISFSKDIVATTSDGASVMVK
YGKLSPAHLQMCYNHAIHLSIISVIYASKTENNETSDNESSNCDPNEDDLFNSNFQEQHSISPSDLIINSDPDININNTV
QNIRKVVKLFKKSPVRNNVLQNYVKAAEQKELSLLLDCRTRWNTLESMVERFLRIVDPIKHALEDLNMDHLLIIDDITNA
RNILDVLKPARIAIEALSRNDTTLLTAEGILKFLFQALEKNHSVLALKLLEELKIRIGKRRDKSLVSLLKYLQDPSSLEN
VEDEFFSMTSKNEITKSAKDLMVRLFPVSPDKSPDNRNLIVEIPTENSEIMEIEDCVLESNAMNQQDMNNANEVEDILKK
QLENFIRESNKSSQISDGSFKTLSREITIFSINGQLTPNLALLQAALKTIKATSTQNERNFSTAGNFVSKKRTSLSDKSI
DSLCFLKYYFMNNQ
>hAT-4_DRh#DNA/hAT-hobo 260-2147 via tfasty with Homer_tp, 4 frameshifts and 1 stopcodon.  [Drosophila rhopaloa]
MVYMSGFFVRYFSSEIGLIDFGSCHFLSFVARCLTFSPARIICKVLKNGHESVAEQITHGTYTLSAKRKGRSLIWNVLAE
IVKPDNTILTGFVFCRTCSKVLKYTASQTSNLNRHSCCKLTKQTSPxKCVSALDKSEAIEKCTSWITEDCRPFTAVRGSG
FLKLVQFFIKIGATYGEHIDLEDLLPDPTTISRKVKKCATEKKQNIKEEIIDIVSSGGASATIDMWTDDYVKRNFLGVTF
HYQKEFKFFDIVLGMKSMDFQRSTGDNVLRKLKSLFMEFNVQSIDNIKFDITDRGSNMVKALEQNIRLNCSSHLFSNVLD
KSFYGTKELTGILESCKKVVKYFKKANLQHLLPTSLKSQCPTRWNSHYRMLKSIIENWGEMNSVLKNNDHSQLLLPIDIN
TTTALVEMCENFEIIFKKLKGVDPFNIDEIWVPNLSLWHEAAYFLYPPALNMQPDDIAEIKRFCVSRMIDNSYTALLTET
GSSCQSTPSLASTSNFSFDAIGSEITDLNSTIQAAAPDKNNDAFFFPNLIKQSNLKIQETPEDELEKYCKEFVEIDYKFS
LIEWWQSKQNKYPLLSKLAIQIHSMPASSAAAERSFSLAGNIITEKRNRLEPGSVDSLLFLNSYYKNYNT
>hATx-23_SM_tp#DNA/hAT-hATx 552-2450  [Schmidtea mediterranea]
MSKRKSEAWNYFQKVNANEAKCNHCGTILSCKGSSTTGLINHLKLHDLLISRNSKCNDTDSEPSTSKTMKLSNSSIKSFL
KSQISLSEILAKCAAKDGFSFNAMIHSDAIKGYVTSRNYSMPKSCTSIQKHVLNFFEEKKQETKTELIRLLHSKKKFSIA
VDEWTDVLMRRFLNVTLRSSNSKEYVLGLVEIKEKCTAEKTKELVENLLKEFGMNLETDIVASTNDGASVMVKYCSIITA
EKQLCYNHAIHLAVLKILYKKVNLDDVVEDEDKTEYDDEELLYDEDDQDEENQVDEEDDGNLVMEMEQNSECFLLVSDIK
SALYAMRKVIKFFKNSSIRTEILLKHVRQKEGKNLRLILDVKTRWNTLASAVNRFLKLIECVNNALEELGLQKFDEKYIL
VLKSISITLEPTMLAVQELSKKDANLITAEGTILYVMKKLKNIDTELSLNLLEILKNEIGKRRNRDMVSLLIFLHQGTYV
KPNENEFLNYSSKSSLKNYAKQLFLRLFPHNEFENREVAEDLETEIIHLEEDELTEYENLQNCIQSLARPKQVKENEFNI
EKEFKNLQGNRGKRSDDMDCLYNALLTVAPTSTSCERVFSVSGNKMTKIRSRLGVNTLNALVFLKYYFNQNV
>VIHAT1_tp#DNA/hAT-Tag1 1758-5169 (4 introns) (combination of tfasty and genscan; gensacan predicted one false intron) [Vitis vinifera]
MASEGGSAXPGRDPAWKYCSPIEGNRNATICNFCGLVMKSGGITRFKSHLMHKDPHNNTKKCPRVPPEVKEEIRLLVHDK
QKAKAKKNADIEEIRSQLRGTMGTHHTHLVNEDDDDEDAEEEDVYMYPTDMHPDERDAYRSAVRASKASNWEREQHENIV
GSKRKSGESSTGIPSTMRKSQSMRHSHHSPPIAPSLYKSSAAKQKNIKDIFKGGAIKETMGRLISKFFIYESVAPAKAKS
HHFKNMIIGAQQAGMGIEPPSPYEIKNKYLEMEYKEMEAYVNQQREKWKTYGCTIMSDGWTGPTKLSIINFMVYSKGTTV
FLKSVDASNYIKDHKYIYELLKTIIKEVGKENVVQIVTDNGSAFMKAGKQLMKKYNLYWTPCAAHCIDLIFEDIGKRPNV
IEVINNARKITNFIYNHGWLLAQMRKYCGGDIVRPGATRFATNYIALDSLLKKRADLKKLFMSDEWAQHKLSRTKLGREL
EQLLFDHTYWDRLTNIVSLYEPLYVVLRLVDSEVVPTMPFVYELMQVMKENLIRQGAGDWMFKIIQDRWQKTLKHPLHAA
AYFLNPRFQYRRGVGSDPELLQAVHDVFAKLDPTTESLGQFGNELVLFRDAKRGFGDRAAIASRSTMVPAEWWFMYGNQT
PTLRKLAIKVLSQTASSSACERNWSTFALIHTKQRNRLAYSRLEQLVFCYYNMRLKLHDMEAENDRVAEKDYLDLLDISA
EVGEEEDNQLFQWVRPIHLDDEVGNPDPRIAAHAREFGVNVERVLSEEVHSESFSKDTDDPLHATYSQQEIDSTSAGHSS
RPSAAGTSASGYDGSRGGTDDGGDNGGGDIDERRHSQYPINQFTCENDFTHCTQDEDHGSRRAGPGIGAIGRPYRGRERM
MEPYNEELLSGSFESMSIGTQFSDSSNEANVYPPHVMSYGQPSSSTDEEYGMSHYSPSRQMXYQIXYQMEEGFGVNTWVN
FEYPIHVEAVGRTQEIYAWHVRIYNQYYRGSLTWYQYCLQQQAGVPSSINPIEPHRNSFWY
>193659637_Api_tp#DNA/hAT-Tip100 ref|XP_001943675.1| PREDICTED: similar to conserved hypothetical protein [Acyrthosiphon pisum]
MDKNIIRKSPNKESVNSNLKTVEVQNTTAIALPSDHLKSENLKLQTSFIEHNDPALPLPSVRLERHSKLLKGPCQVHLSL
YPRVKFEDRFRYFQKSWYETFKWLEYSESINEAFCFCCRAFSSNNIIKKGHIDQSFIKKGFTNWKGATEAFRLHEKSQCH
IDSVMSWEHLKKGIPIDVKLDKQKEITLAAREKIRLENRDIIKRLIDVIIILTKSGSSFRGHLEHEDSVNKGLFLEIVDL
LKRYDPIIKNHLEHGPKNAQYLSGKIQNELIASVHNVMFQEICKRLNGQQIAVMADETSDCGHIEQMAIVVRYFDDVENK
PIELFISLERLETTDAQSIFNVLNTIVHKLKLDWLSVSSVCFDGAAAMAGHISGVQSRCKEKNSKILYVHCFAHCLNLVL
VDSCISRKENSMIFDFFGTVQIIYNFIEGSPSRHAVFEKIQKSVCVKLKTLKFLSTTRWACRAEAVTAVRDNFSVIIQTI
NEINYSTKQPEIKAKGKGIISQCLNFNFIICLELMHPILQLIVKVSRVLQDPGLSILTALEEIKCLRLAIENMRSDSLFY
DDIYDQSQHICEEHGVNIPSVRPRKLPTRRDENWKNQFVFETKKEEIRVSTMYPLIDSLVQGIDERFNQESTSIITGVGK
MLKFELSKDDINLLTNHFDLSKDEFVSEIHLLKARNKDDILTNKDCAFWLKWLRENGIETIFFQHRKVLKGFSVIPVTSA
SCERAFSKLTHIKTKLRTTMAQGRLENLMLPYIEQTMAKNVDINDVIEEFKRMVPYERRLAL
>193603728_Api_tp#DNA/hAT-Tip100 gi|193603728|ref|XP_001943078.1| PREDICTED: similar to 52 kDa repressor of the inhibitor of the protein kinase (p58IPK-interacting protein) (58 kDa interferon-induced protein kinase-interacting protein) (P52rIPK) (Death-associated protein 4) (THAP domain-containing protein 0)... [Acyrthosiphon pisum]
MSKRENKNTDNVSILLPQIDTPSCSHSPTDLRTNENNILKSDAEQIVEDNDIGYCFGKNLCDEIKFKLLTAHWSPDENYK
FPITTNRKKNLKFQLGWIKRFPWVVYSRIGEQGAVCKYCAIFGRKFGGKGSHQKQLITLVIRPFNNWKRAVAKFTEHSQT
EFHNSNATRANNFVAVYSKNCQNIIQKLDSSQIDQNRKILISIIQTIILCGRQEIALRGISDYDGPLPSDNSEPTYNDGN
FRALLRMRISCEDKNLTHHIENQALNVTCISPMFQKNFINICGKIIQDQLINKINQVKCFSVLVDEAADVSRDEQLSLCV
RYTDNIGRNEINNYVLKEDFLQFVPVNSTNSQILATVILGTLKNLGITCDYLLGQGYDGAAAMSGNFKGVQSVIRELHPA
AIYVHCSAHSLNLALAHSSYGTNIIHHIRNCIGTIQSVGNFIKISTKRTELLKNKIKQFLPQTKWTELTSMIDTRWVENH
DGMLRFSEIFKPIVATLEELQLFVDIETSSKALQLYKCVTASDFIISMITATTLFSLTLTLCKMLQSVKCNLIAVVEHVE
IVLSEVKDMRKKIDENFKEIFNKSEQFFMSVNEGEKIKIPRLVSRSKNTINVDTKIPEDYFRVEIAIPFYDNFIRQLEER
FYKHKTILSSLYLLIPKMCLKSPIFEPDFSLYSDFINVDSIPSELKLWKRKWIAFKDIEVPHSAVELLNHCNPELFPNIH
FLLKVLATLPVSTSNPERTFSTLKRVKTFLRNSTGQERLTGLALLSVHRDVTVNPEEVLNRFALQKDRSLLLA
>Arthur1_Hma#DNA/hAT-Tip100 ref|XP_002168623.1| Fragment (both ends truncated) [Hydra magnipapillata]
MQIDGKPKRYCSQNLFYRVHSRNGEKVPRSWLCYSSATSRIYCFVCKLFSADDNSFSRNGFCDWKNAASRIQSHENSIAH
RNATITFSQRVQVRGCVDSAIVEQYRQECAYAKSVLERVVSVIKFFAERGLAFRGHTEILGSSSNGSFLGILELIAQFDP
FLSSHIDNHGGKGKGSVSYLSSIICDELIDVMGKQVKKTILSEIRGAKFYSISVDSTPDISHVDRLSCVFRYVLNDGPIE
RFVQFLSMKGHGAEDLFNCLYSFLEEAKLDIKYCRGQSYENASNMAGKYSGLQAHIREKNPLAEYVPCFAHSLNLVGASA
VNCVTTVSGFFDFVQNLYVFLNASTQRWELLIKGLDSNQLVLKPLSDTRWSAHSAATKALSKGFKNVKIVLENIAEDPEE
KVEVRTTAAGIAKKMDQLEYGILLELWTPILDRFHKTSLKLQSPQLDLNEAVQLLTLLKEYVNSLRAQFDFFEKKGKEIT
GSTSYKEENQRKRKRSVQFTRHDGSADETVFSAQQKFRVMVFLPVLDHLNSALCKRSEAYSGVCDKFGFLRNIRSLEQSD
LRRASRNLIDTYVDDFEESFEDEILHFKEYLLADTYLQQNEKEL
>Gulliver_tp#DNA/hAT-Tip100 (-Gulliver) Closest to Charlies [Chlamydomonas reinhardtii]
MEKRGTKLGANDNVFHPGAKASVWTKGGNKVMNMTLFNKHLLSKNHLDVIGAAKNHTKMSNIVEKQKVKLNPTLCSLIRS
AYACGKDAMPLTHYVKMVKLQAANCADCKHDCKAHTCRKCDASKACGSGITISGPYHTAEKASEMLACLSEAISEEQLKN
IRASPVISMMIDESTDRTVSHNLAVYITYVAPDDSIKTEFLQLEAMNNGATAVNIYDRLKEVFTESKIDWSKLVAFTSDG
ANVMVGKHCGVATRIKTDWPCVLTSHCAAHRLALACADFFKEFPALVKVDNMLSKIYNYAKTSTVRTAALNDMYKERKAK
AYKILKPHTVRWLSRSECVRRIKITYPILLAFFNERKKDKKDVAAAEIYEWLRQVDNLLLITCIDGVLAATAELSKWFQQ
SDLALVDVHQYLELGLRHLINAYTYHKEGETSNAPPSFTAPIQALIKDLAAKDGVFHGHQMVLTTPPTTIAPATTTTATT
TAESDSDNDGSDTNTDTTAESGSDDDDTAPTAPSWAAFPQTLFRSKLALSSMVKKLVENIKMRFPADVSVAAKFGVLGPR
ALAADSGVPKYGEEEVAALAQHFKPVLGDDCLLAVDQWVMARARLIAVAKEQKKSGDVMKARPFYERLLSWLSGMGRELT
VLVQIMLVLQPSTAEVERGFSAMNDIKTPGRASMKLGTLDVLMRVRLVGPPIAYQQRPVAGVSLAPYAEFDATLLGPAVQ
KFAAKLGRVPQRSSHNARPSRVKHRVCEIDVKALLKEAEEEAVQNVDVSC
>Contig36717_Hma_tp#DNA/hAT-Tip100 45633-43245 (reverse) of Hydra m. Contig36717 via tfasty with hAT-74_HM, 1 frameshift and 3 stopcodons.  [Hydra magnipapillata]
MDRPKTSCRSHNKNSSTYRSFHSKNNNANSGQKSIFEAFAVKQTTKDTKQVQEVVDQQLIPKIRTNESEIIIRCESNESA
IPNINEHLLDGRMYMMCHQSQQKWETIFPFAIYSAKDQGWLCSICKEYGDIGEVWRTKGAKLFEHPQRTFTAHQNSKRHQ
DAAEKHQQVKKILSTKGTVYNQMVDGSSLYRIAGKQRNRNVIKSFKTDVTSxKSFKTVYFVIKKNWAVPENFRDIIEFIP
DLGDKEIDSHFKIASERATYTSSTSVDQFIKIISDKLNNDVCTKIILAQDFSVLADETSDVADRTVFSVFIRxVDSDSHT
IEEIFLGLVQVIGRKDAQTLCEQIQLVLKSKSIDIQQLRCHGFDGTNTMSGVHNGLQAKLKKISPHSMYFKCRCHCLALV
CVHLMKEFDVLVNVDTNILGVWKAMKYSSIKASIFDAAQNADGLKLAKLLTRWLSHGASSVRLVSRFEQVINSLDAIVNE
KYDAELEGLTYQLLVPDNILFLLLLADVLVPINKFAKFLQTGNLVYTKINLKIDLLKNELNDIASGKSPLFNTHSNKFLN
ISKERQGVTRRLRKKxFVEEFWKKIKVPFMRRLKAEIDAAMRINDDVFLAFDAFNATGENQDPNKFSANISKLSRFYGHA
KPAVIDDENIIAPPLFNSIQDNEDNIHHFLSDYREILCNLETKRNLKIQVLVKEGKLKSNNIDIYKHEHPITSDAIYTFF
RTDYACEQYYDIMKLFKLSLLIPPSTAYVERRFSMLNLIHSKQRNQLSIIALDRLMxISLVGPENLTNQTYEELTD
>115748410_Spu_tp#DNA/hAT-Tip100 ref|XP_001200249.1| PREDICTED: similar to transposase [Strongylocentrotus purpuratus]
MSLFKFGFTSRGKSGAEFSDSKSRKTEEFREEHEELKEGGLRESSVTLQPGPSSRTSAGSSESDVKLISEAESNAGLLDL
GSKDSGPKQPILASFPQVKTGGKNRSFNKDWYKQFTWLEYSAISDAAFCYCCRIFPSISGHKEHNFTENGINQWKKAIEK
FRKHSESESHKTSFSRWHHYLQSLSEGSIASKISGQYSRIVKENWAYITQISKVIIFLARQGIALRGHNESADSLNRGNF
LELCSLIGGANPAFGERIKTMPLNATYLSAEIQNELLNVTAEIIREQIAEEVNSAGLATIIVDESKDVSKKEQISICLRY
AEYKEAEGHILHEEFLDFHEADDLDAKSLSNQIVREVGKLGLRKFDIVGQCYDGASVMSGHLSGVQARLKEHFPNAQYVH
CHAHRLNLVLVDMCKNVSSAGEFFVLLEALYVFMTRSLVHKVFVDYQQRAKCRVKELVRLSDTRWVCRYQSLSTLKTRYS
YILEVLEHFCDSQESKRDPKLVVEARGLLNQAMSVSFVTHLEVLMTLLSHSQALSETLQANDANLGNAVTMINSVISIVE
EKRASGWPDLVQDITRICEDNNIPTVPQPKRRRKQRTFDDSFLMASTGHRSQSEAESSAEFLDDLRVNTFLPILDAFKSE
MTRRFSASNIAIMQGVDALLTPSSVNFLKFSAVEPFVELYTDSLDVDVQLLKAEMTMARQIISNKQKDSSTPDSSRRHNA
NSFSSMEKLIPSASLPNLRKTTQLALTLPVSSAVCERSFSAMKYIKNYLRSTMRNQRLSDLGVIYVSGERSKELQTNPVE
VLKKFSQREQRTRIQLF
>31212193_Aga#DNA/hAT-Tip100 gi|31212193|ref|XP_315081.1| ENSANGP00000002442  adjusted (too many introns; merged with 31212195) Arthur-like [Anopheles gambiae]
KKKNGNVEERTWLVYSETTNCVYCYPCVLFSKSSSKFITGLDNWKAITALLSEHETSKEHIVSMSTLYKRSSTVNRIDTE
LVLEMEKEEKYWREVLRRVVSTIKLLGRLGIAFRGHDESEQSNRKGNYLSCLEYLSEYDDFLKLHLEKHSFQGRGNVNYL
SNTICDEFLEIISNNIKSKIVDDIKSAIYYSIIVDSTPDIAHIDQLTFVIRYVSFSGKIFERFLGFIPIDRHNASYLEQE
VLEKLEKLGLNIAHCRGQSFDNASNMSGKYMGLQARIKQHSPNAVFIPCANHSLNLVANFAAENCKKAVNYFTVLLKRCS
VTRWSARADAVSALNVGFKDIQNALSDICNDEVEKTATVDEANSLLKQMVKPDIALLTIIWNTLLQRINATSKSLQTVEC
ELFKGVSLITSLVKFTDNFRTDFSKVEEGAKELSNLSSLFTEKRTRKRKLFFDESRENEHQFTDRDDFIVNTFYAICDNI
KAQLTQRTEKYETVLEPFRVFYDLNMSAENRSKLIKALSEMYKNDIEVHGLQEELEQFILFIKENDDLKIIDSDNNNEGN
NNIKVDIQALYKVAKYMSCTFPNMETLLKIFLTIPISNASGERSFSVLKRVKNYLRNSMGEAKLNNLAILYIEQDLMDQI
DTEAIIEQFARRKSRK
>ZhAT12_ZM#DNA/hAT-Tag1 739-3411 via tfasty with TAG1_tp, 2 frameshifts. [Zea mays]
MSSRNEAPSSVAGEYDPKSDPTRKPRKSTDPGWKYGFWPDLQNKDKVECTLCGQVVSGGIKRLKQHLAGAYGDAKLCPKA
SSALRKEMTSYLEANKRKRPMFLDEDEEDDEVVEVAAADGANDTSAVESQASKVQPSSGTAAKKRQSTLQFKANSKAQPK
TTKSVVEMLRRTPEEVVDERLSGSYQPTILASAKSKEDKHYVDMQWALFFYECGVPFNAAAARQFQIAIEATAQFGSGYK
PPTPYQLGEPLLQEAVKSTTTMREEHERAWKHYGCTLMSDGWSDRRGRHLINFLVNSPEGITFLESVDASSEVHDAYMLA
DLLEKKVDEIGRDKVVQVVTDNGANYKAAGKLLMDRIPTLFWSPCAAHCLDLMLEDIGNLKEFKKPIARARRVTTFIYRH
GRILAAMREKTGGADLVRPAATRFATSFLTLKSLYKHKDALKALFASTAWTDNRLSKTSAGLDVYNIVFSTQFWNSVEDC
LRASGPLLIVLRVVDGDERPAMPEVQALMKCAKEKINQSFAVQSKKTLLKKIITIIERRWEKQMDHPLYGAAMYLNPGKL
HPLIRNDDDATVGQLRGCFLDVLARMVDDEETRDKINSQAMDYEFLRGAAFSNKMAKDNLQTMTPRKCLWLLLVYYLLVV
ASSLLNCCDVIAVEWWRSYGGRAIELQRFARRLVSLCASSSGCERNWSTFEFVSYYVCLLKSSSTYLATFVSNISGLNDQ
VFSLFLFCRIHTKKRNRLLHKRLNSIVFISYNRKMKARFQKLRQKKGKNFDPLVHEDFNWDNEWADSLHVVPEGGRGCEC
DLTWDLVDNAIGASQALRGRNLPRRAHNVYSRRNSVAAQNMSEAEEEDEDEDEDVPHDDAEITDCEDESNGGNDGEEGEA
PNIPGEFDDDF
>34906206_Osa#DNA/hAT-Tip100 gi|34906206|ref|NP_914450.1| putative transposable element [Oryza sativa]
MEKYYKRKSPSHGEDVAPSQPSHRHNAATFNRRDVPEDINWEVEIQFDPGKRKRIEDYHPNQKEMVRRKYLDNGPCQPRP
DDLPVTNIGGRDRKFNPEWYDEFGSWLEYSESKDKVYCFYCFLFRDPNKKSAGYDAFVTSGWSSWNKKHRLKEHVGDIDS
VHNQAMRDCDALLKKEQHIDVSLNNQSNAEKIAYYTRLNGSIDVTRILLKLGMPFRGHDESEESLNKGNFKEFHAYTAEQ
NPALHKVAGKNAPGNSQYTSSKIQNDIIRCFAKEVLRYILEEVGNDVFCLLVDESRDVSYKEQMAVVLRYVGKCGSVKER
LVGLVHVKETTSMYLKSAIDDLFAEHKLSLKQVRGQGYDGASNMRGEFNGLQSLIMRENSSAYYIHCFAHQLQLVVVAIV
KKHKGIGNFFDMISLLLNVVGGSSKRRDMIRDINAEHVHDALECGLLITGSGLNQEISLQRPGDTRWSSHYKTLKSLVQL
FPTTVKVLEYVEENDRDDKNSRQAAGLLVYFQLFQFVFYLQLMLNILAITNTFSVTLQRKDQDIVNAVNCVKSTRNHLDE
FRRSGWESILAEVHNFCEKYDISELEMEDAYINPKRPRQKTGITNKHHFEVDCFNEIVDWLLQELDNRFNEKTSQLLICA
AALSPRQSFHDFNLEHLMSLAKLYPKDFDDGELMDLRHHLSLYIADVRGDDRFANIETICQLSQKMVDTRKHICYPLVYR
LLKLALVLPVATATVERCFSAMKIVKTYLRNRISDEHLSDCVICYVEKQELMKVTNSAVIHRFETLKARLHDVFTK
>50907251_Osa#DNA/hAT-Tip100 gi|50907251|ref|XP_465114.1| putative hAT dimerisation domain-containing protein [Oryza sativa]
MRRYYQPVPKRTLECGAGTPTGLKKRANVTKKFNPDATTSDLNRHRSIDGYHGETKDKVGGGTSDHSKGRKGLEDFGYQS
KSHELSSNHPDIGSAYRICFIASLDCARFLLMQGMAFSGPGQSPTSINKGNLLELIDLYKKRDKEVERAFDMNVVGNIDI
TSPLIQKGLAKACAQEVTEVIIGEIGDGNFTILIDDSHDMAEKYQMAVFVRFVNKKGKVIERFLGLEYLTEDTPAAFKET
LVGLLAQHGLSISKLRGQGYDGASNMRCEFNDMQLLIHNENPYAFYVHCFAHQLESVLITVSRCSSSLIHDFFVSISLII
TTTIESCQMMDKSTEKHHQTTLNKLESGEILSEGSNHKEKNLASLGGTRWGSYYTTLGRINMMWDSVLDVLMIVHQHGRQ
PSRAGGLIQTMESFEFVFILKMMLKLFTITNELSLVLQRKDEGIIQAVGQLTDVKECLQTLRNNGWESLFEDVKSFCATN
WIPVPNMDEHIRATGHSRRDGVTLT
>37534376_Osa#DNA/hAT-Tip100 gi|37534376|ref|NP_921490.1| putative Ac-like transposase [Oryza sativa]
MTPTMKSVIRKKRIEDLTQSQRGAMFRYITKESQGPSGDQTLDSDVANEPNDGETEIETTVDDVLSESTHEQVENHGDGD
NVDDSSVHIDLDSSDTAFQPEIFDPRCWDSLDAKQLDILAQLGPKRDLSIQKGPKDRLFRRSALLYTRILSNREKYDRDW
LVYSKELDRVFCFCCKLFTKGREHRYQRLQKDQTIDKAAQRQLEKEKDHWRKVLLRILVIVKFLAKHNLAFRGSNSKLYE
DSNGNFLGMVEMLAEFDSVIQEHIRRITNEETHVHFLGPRIQNELIHLLACDVKKWHILKDNMTGLILKSVSTTRWESRV
ESVKAIRFQCAKIREALLQVSESDNEPLTSSEAKGLANNELGEYEFLVAIVIWYEVLYAVNLVSKSLQGKDMLIDVAVEK
VQGLISFFKGYRETGFLNALKMSKEIALEMNIGTTFHKKREIKRKRHFDENRGEESVASQTAEDSFRINYFIHVIDQAIS
SLTRRFEQYQGYQKIFGFLFTSDTLLSKDSNDLKSSCDRLEAALKKDGKFDIDATELHVELIFLQSFISQEKLGPVEILK
FLKRHDCFPNATIAYRILLTIPVTIASAEWSFSKLKLLKSYLRSTMSQERLNGLAIIALEGGMLGRINIKLSLKILFQET
LKECRFSSEYYAQFLSFFMTSHMAPKFDGTALTEGVAKSGMTFSGLDGRDAASKWSDQGGKGERVPASLEVDDTSLPRWR
GGDKAAVTLVSSSLRLTTTGSSTACFYIPLPAH
>HAT-6_XT_tp#DNA/hAT-Charlie 200-2045 via tfasty with Chaplin8_FR_tp, 2 frameshifts.  [Xenopus (silurana) tropicalis]
MMLQVIAKLALTMPKRKVDSKNRAFKNRWEAEYMFTDIAGKPLCLICGANVAVIKEFNLRRHYETKHQDNLKDLNAEQKI
QKVEELKKNLTLQQTIFTRAKSESEAAVKASFIVAEEIAKSARPFTKGEFLKSCMIKVFDVLCPDKKQMLANVSLSRNSI
FDRVCEMATDLRTQLSERSKDFIAYSLAVDESTDMTDTAQLAILIRGVDSNLRITEEIMDIKSMHGTTSGKDIFENVCQS
ITDMKLPWDKFIALTTDGAPSICSEKSGLVGRMRVKMQEENCTGELTAYHCIIHQEALCGKVLKMDNVMSTLTQTVNIRA
KGLKHRQFQSFMREIDSEFADIHYHTEVHWLSRGKVLNRVFELSNEICQLMDSKGKDSTNFRDKKWKCELAFTTDITAHL
NTLNLQLQGCDRMITDMYDAVKAFQVKLLLWETQMHQCNLPHFPCCQVMLNQVGTTVFPNTHFADKLSALRTEFARRFGD
FEEQKKNFELLRNPFAVDVETAPVQIQMELIELQCNGTLKAKYDTAGPAQFIHSIPAEMPQLRLHAARTLCMFGSTYLCE
KLFSVMKTNKTAHRSHLTDEHLQSILRISTTQNLTPNINKLVAKKRCQASSSDKMT
>Charlie4_tp#DNA/hAT-Charlie 459-2252 This is from the Charlie4_Longi consensus. The Charlie4 protein has 5 different AA, but there are too few copies to be sure that the differences are real.  [Crocodylidae]
MSKKRKYDEDYVLYGFTCINERDGTQKPQCFLCGKILANGSMKPAKLKEHLTSVHPENASKDAGFFRAKKAQFEKAGTLP
KLGFAISQKPFLEASYKVAYRIAKQKKPHAIGETLVKPCALEMVELVCGLEQRKKLEAVSLSNDVIRSRIVDISFNILKQ
VIEELAASPFPFSMQLDETTDISQCSQLLVFVRYVHADAIKEEFLFCESLLETTKAVDVLEMVKSFFAKQNFDWKEKLHT
LCTDGAPAMLGNTSGFATLVKKEAPHVVVTHCFLHRHALATKTLPTTLKEVLSTAIKVINFIRSRSLNHRIFKRFCQEMG
AEYEVLLYHTEVRWLSRGQVLKRLFELRAEVSLFLKEKENPLLEHFERKDFIHGLAYLADIFNHMNEINLSIQGPEVTIM
DATEKLQAFLAKLPIWKKRVEADILANFQMLEEVLYQDGVEIQNSLSISLKREICEHLETLQNSFKSYFYLDGIKVEPWI
RNPFLSDINCIEDVDLAKDELIDLRTKNLLQLEFNSKSLGEFWCSLREAYPRLVKRAMEALIPFATIYLCESGFSTLVTI
KTKNRNRLDVQHDMRVALSKTTPQFNVLIQAKQQQPSH
>HAT-7_XT_tp#DNA/hAT-Charlie 143-1921  [Xenopus (silurana) tropicalis]
MERKRKYVEEYLKYGFTNLISNGIEKPQCVLCKVVLSNESMKPSKLKRHLETAHSEHTKKDLEFFRRHETSCKRQRLDQA
GSFQQSNKVLIQASYEVALEIAKQKKPHTIGEKLIKPCMLKMVKLVLGDSSEAKIQGISLSNNTIQRRITDMSEDVKEQI
LNEIKASPLFSFQVDESTDISSCAQLLVFVKYIHSDDIKEEFLFCSGLESTTKSQDIMEKINAFFETGGLKWENVCGVCT
DGAPSKLGSKSGFQKKVKELAPQAKGIHCMIHRYALASKTLSIPLQAVLDSVIKIVNYIKSGALKTRLFKELCKDMDSNH
EVLFFYTAVRWLSKGNVVNRFFELKDEIKLFLDVQEKHDLLVYFNDKAWLERVAYLADILEQQNKLNLKLQGKETNIIVF
HDNLCAFLSKLQNWRRKVNIGNIAMFEKLCSVVDESGGEINKKLKEEIVGHLESLEKELERYFPKLKEEETTFTRNPFSA
SLDITNIPNELQDEFIDLRNDSSARNLFNEKLLTQFWCSMYHSYPNVTMLAFRILIPFVSTYLCESGFSTLLRLKTKERN
QLNVENDMRLALTNTQPRISRLVDKLQFQPSH
>HAT-14_SM#DNA/hAT-Charlie 507-2450 [Schmidtea mediterranea]
MDRWLKEGTLKKKNSSISAPTAEKTAEDISEEQQPTTSTKSDHSQLKRPRNDSILCIKKRKYDISYLSYGFTSIGNEDTP
KAQCVICNKILSNASLAPTKLKRHLATNHPDHTNKPLDFFKRKLEELQNTKLSMVKIVKTNNQKANEASYKVSYRIALAG
KPHTIAETLIMPCVKDIVLCMFDDEKSVEKIDMVPLSNNTVARRIQDLADDIEKELISRLHICDAYSLQLDESTDVAGLA
VLLVFVRYNFGKTIEEDLLLCNFLETNTTGEEIFNSINNFMQKHDINWQKCIDVCSDGAKSMVGKTAGVISRIKNIVPNC
SSSHCVLHKHALVCKKISIDMKTVLDEAVQIVNFIKARPLQSRLFKIICEDMGSQHTALLLHSEVRWLSRGKVLSRVFEL
RRELSMFLSEQKHERFAVLTNSCWLMRLAYITDIFSKLNEVSLSLQGKSITVFTVKYKISALSRKIEFWINCVENNNVSC
FSTLSDFIIENDCLLNEDIRIDIVKHLRELYDNLQKYFPASNNDLMWVENPFIIKEKPDCLSISEYENLIEINSDEQLKY
NFNTVHLTTFWGNLISEHKVLAERAIRVLLPFSTTYLCETGFSYYTSTKTKYRNRLNCSADMRIQLSAITPNISRICQEK
KQQHCPH
>HAT-11_SM#DNA/hAT-Charlie 258-2134 via tfasty with hAT-2_SM, 1 frameshift. [Schmidtea mediterranea]
MDKWLNLNMNGNDADDNATNSSQAGQSIGKEASNVRKRKYDESFLQFGFTFQNWKGNEQPLCLICNELLASESMKPSKLK
RHLESKHVSYVNKPKEYFERLCESLNKEKKTFEKFINVNEKYLLASYEVSYCIAKNKKPFTIGEDLVLPAAIKMVEILHG
RKYGDDIRKIPLSNDTVSNRISDINKDQLIQLITRIKESPKFSIQLDETTDITKLAQLLVYVRYVYKESVGEELLFCRPM
EDHTTGKDIYCKVDEFLKAEGLEWKNCCGICTDGARAMTGKNIGFKSFFQAAHYDHITFTHCLIHREALAAKKLAPELND
VLQDAVKIINFIKSHALNSRLFSNLCKDTDSNYTTLLLHAEVRWLSRGQSLRRLLILKDDIKIFLTERKCELAAFFQNDL
WLSKLCYLSDIFAKLNDLNLSLQGKNCDIFTSNDKIESFIKKINIWKSRVEKNSFEMFFSVDNFVIEKIHCKTFIAKTIV
DHLKALEIQFRTYFILNIDFQNIVWIQNPFWIGLSEINHLPLKAQEEFAELSSDSNLKLQFQKKTLTEFWIGTRTEFPTI
ADMALNVLLPFNTTYLCEVTFSALTHIKSQYRSALKDVEEVLRPAVSNIPPRFDLLCNKKQAHPSH
>Charlie12_Prosim_tp#DNA/hAT-Charlie 622-2436 [Strepsirrhini]
MASTTSQKKTEPPKRKITDEGRLFNEKWTDDYFFVEANSKALCLICREFVQVFKDYNLKRHYMQKHAAKFDAYEGLCRKD
KIAELKKSLSSQQKFFLKVTTQTDSIVKASYVVAYLIAKKSKPFTDGEFIKQCMESMADIICPEKKGDISKISLSHQTIA
RRIEEIGKSIERSLESKAANFKFYALAMDDSTDATNTAQLAIFIRGIDDEYNVTEEMASLVPLKDTTKSRDLYEAVKNML
KRFSLSIVNISGIVTDGAPAMVGKREGLVKLIEDDAIAAXNSRLMKYHCIVHQENLCAKALKMDNVMQIVIKTVNFIRAK
GLNHRQFQEFLKSIDADYGDIIYFSEVRWLSRGQMLKRFYDLRHVIKSFMVSKTKFVPELDDENWLTDLAFLVDLTAHLN
ELNMRLQGENQLINTMFQTITAFQMKLKLWQAQIKANNFMHFDTLAKHSPVNSEKYAALLFDLIQEFENRFQDFRENNQY
FGAFATPFSVDINMLPANFQMECIELQSDIQLKEKFDHVSLLDFYRSCLPRDKYPSLHNHALFMSSLFGSTYICEQLFSR
MKHIKSKIRTKISDEHLENSLRIATTSIEPDIDALVSQIQCQISH
>Chaplin6_FR_tp#DNA/hAT-Charlie 206-2164 [Takifugu]
RIDAAAGDVYGGVVDSGTAVRVMDXFLKRKNSGSELDPGQNPDPDEGPSMSGGQKKAKTVTSSKVSGARQYNESYLSFGF
TFTGDATAPTPLCLVCGEKLSNSAMVPSKLKRHLQTKHPSLQNKNAXYFVRLREHTEKQATFMRKTTKVNERALKASYHV
AELVAKSKKSHTVAEXLILPTCKAIVNEMLGPEAAKEIAKVPLSDNTISRRIDXMSADIESVVLXKIRISNKFALQLDES
TDXSGHAQLLANVRFVDGDAIRENFLFCKALPEKTTGEEIFRVTSEYLEKGGLKWENCTSVCTDGAAAMVGRTKGFVSRV
KERNPNVIITHCFLHREALVAKTLPADLVPVLDDVVRIVNFVKSRPVKSRIFAALCEEMGAEHKALLFHTEVRWLSRGKV
LARVYELREELKVFLTNEGSDYAKLLAXDEWCARLAYLADIFHHLNELNTRMQGRNENLLTSTDKINGFRSKVQLWQQHV
ESGNLEMFPLTNKWQDVNTAALXEIIVKHLKTLEEKMSFYFSSASTECLDWVRDPFSSASAVGKDMTLQEQEELTELRQD
RGLKLSFADLPLDSFWLAAAKEFPMLANKAILTLLPFSTTYLCEVSFSSLTAVKTKNRERLRAVEEELRVCLSSIPARIS
ALCSSKQAQVSH
>Chaplin4_FR_tp#DNA/hAT-Charlie 136-1965 [Takifugu]
GAQHFSTRRQHESNTAAELGDGSIERLFSVCWRQLHYPLFCWPRTLISEMSLSKRRKVDTECRIFQEKWTYSYMFTEVNG
KPVCLVCQQQVSVLKEYNIRRHYETQHGEKYSSLHGELRKQKVNEMMVHLRKQQSVFTRSREASDAAVKASYLIASQIAL
ASKPYSDGEFVKNCMLTAAEIVCPEKRHAFANISLTRNTVADRISELSADLDHQMKRKVESFLAFSVAIDESTDITDIAQ
LAIFIRGVDKTLTVSEEFLELVPMTDTTTAEDIFRSVVGALDRIGADWSRAVSLATDGAPSMIGKKAGVVTKFRDKVQAT
NGGGNFWTFHCILHQEALCSKSLKMDHVMEVVVRTVNFIRARGLNHRQFDSLLSDCNITHGVPYHTEVRWLSRGAVLKRF
FDLRGKIGQFMEKKSKPVKELQCHLWLQDLAFMVDITEHLNNLNKMLQGRKKIITQYYDSIRAFKLKLXLWETQIASGDX
AHFPCLKDMCAASVNFDAKRYKDKISRLLREFEKRFQVFXELETEFAVFRSPFTVRASDLPVDMQLEIIDLQCDVELKDK
FASVGLDTFYKYLLPGYPTLTALAAKIRLDCCQCCPCLGLPIFVSRFSH
>Chaplin8_FR_tp#DNA/hAT-Charlie 878-2767 [Takifugu]
NRNFSGTKWNYIDYTAPNMSFSKPAVKRKVGDEHRQFQEKWEMQYFFVEHRGTPTCLICREKVAVHKEYNLKRHXTTRHA
EEYAKCQGDERANGVANLKTXLLRQQDFFKKATKESDAAVEASYVVSEMIAKAGKPFTEGEFVKKCILEAAGIVCPEKKD
QFSNISLSANTMAERISDLSSDIYDQLCEKAKCFSVYSVALDETTDITDTAQLAIYVRGVEDNFEVMEELLTVIPMHGQT
TAQEIFHQLCDAIQNAGLXWXRFVGITTDGAPSMTGRKNGLVALVKKKLEEEGVEEAIALHCIIHQQALCSRCLKFDNVM
SVVVKCINHIKSRXLKHRRFCTFLEEMESEYGDVLYFTEVRWLSRGNMLKRFFELREEVKAFMEKDGVAVPVLSDPKWLM
DLAFLVDITHELNVLNKKLQGQGQLVSAAYDNVRAFXTKLLLWKAQVSQANLCHFPACKALMDAGTPFSDQKYVDVILKL
QEEFEHRFADFKTHRARFQIFADPFSFDVQDAPPVLQMELMDLQCNSELKAKFREVSGKADKLGQFLRELTPSFPELSRM
FKRTMCLFGSTYLCEKLFSTLNFNKFKYRSRLTDEHLQALLRVSTASSLKPNVARLCERKRCQVSSSKK
>Charlie11_tp#DNA/hAT-Charlie 219-1994 [Eutheria]
MLKKXKXNXNYVHYRFACTMEMDGTQRPQCVLCNSLFSNANLKPSKLSEHFNKRHGGAARHDLDTLKSSESTFDHSRTLR
TFGFVSLEKPLLQASYQVAYLCAKEKKPHTIAEKLVKPCALEMAKIVLGPDAQKKLQQVPLSNDVIRSRIHEMSQDILXQ
VIEDIKASPLKVGIQLDESTDIDGCSQLLVFVRYVKEKEITEEFLFCEPLQLTTKGIDVFNLIRDFFLKHKITLDVCGSI
CTDGAPAMLGKKSEFVACVKKEVPHIMITHCMLHRHALAAKXLPTKLKDVLSTAVSAVNFIRGHALNHRLFRAFCEEIGT
EHTVXLFHTEVRWLSRGQMLTYIFEMRKEMNQFLRNQSSNLVDDFENREFILRLAYMADVFKHLNELNTSMQGTGMNTVT
AREKLSAFIRKLPVWIKHIEKRNFTNFPFLEETVVSENEGMTIATEVTMHLQQLSDSFRXYFSTGDLDVAKKWILDPFLF
NLDSINDSDLMKDDLTELRANGQIRMEFETMKLENFWCAQLAPFPQLAKTALEILVPFATTYLCEIGFSSLLHIKTKARN
YLNASDDMHVAISKKFLISRTSLNKSYSRSH
>Charlie5_tp#DNA/hAT-Charlie 568-2451 [Eutheria]
MTGTVKKKRDWKKVCRKFHDEWQLQFAAAEQNEKAVCLLCKKIFKDNKVDNIKRHFQQIHSEFDKKFSLNSQKRINEISR
LKSELNVQQKFFKQFLTGSELVTLASYKMAWILAQKRKPFLDGEMVKEIIISVMEILLENYEEKTKKDILQKVKDLQLSH
QTIAHRIQDLSNNIKDQLIQNLKNCKYFSLALDESCDIRDTAQLILWVHFVSKDFQIYKEMLSIRGLKNRTHGIDIFESF
TSVKEEFQLDMKKLVSITTDGAPAMLGQKSGFIGILKQETDVSLIASFHCMIHTENICAQFSEADSMKSVMDTVVKIVQY
IRANAMNHRQFMELLKEIEDNEFNDLVFFANAHWLSRGRVLQRFTVLLTPIQDFLETKGMLAKYSIIKDKKWQCDLRFLT
DITLHMNKLNLKLQGKEKLICDLARQVREFMLKLKLFIIQINNNDFTHFSNMNQYAEDFNCNRQHYVNWLQKLQEKFEER
FVDIDKFRVAFQFMQYPFEFNVNNTELTQELVNLLNLDRRSFETDMLLLQSQINSSKKDEPVLSMWMRILKENDFLILDS
VIGKLLSMFGTTWVCESTFSTVNFMKSKYRSSISDENLASELRCAVSVKYTPDFEDLVRKKECKISH
>HAT-17_SM#DNA/hAT-Charlie 480-2306 [Schmidtea mediterranea]
MDKFLLNKSVKAPNSVTKKIEKKRKYAEDFIEFGFIATEKNGQVFPFCLVCNETLSNASMVPNKLIRHKETKHPELSSKS
KQYFETLRAQSEKQAFKMKNFCKIPEKAQIASFQVAYLLAKKRKPHTEAESIIAPAVSIIVSTMLGCEAAEKVKNVPLSA
NTISRRIQDLSNDIESQIIENFQSSEEEFSKLWSLQADETTDISGKAQLITFIRFVHGTKVMNQYLFCQELIETTTGRDI
FNLIDDNVKKYQLQWQKCVGVCTDGAPSMQGKLKGLAALVRLVSPSVTITHCMIHREALVSKSIPSQLLIVMNQVVSIVN
IIKSKPLNSRIFGLLCDAMDSDFKTLLYHTEVRWLSKGKVLERVVHLKTEIISFLEVEDITLDFDFRDSDWWLKVSFLND
LFNRLNVLNKSLQGSAENIMTATSKLLSFKEKLHLFIRKIKEKSFDFLPTVDKFANKDEISELALQTMEMLLKALDNYFP
SLNVNLYQWILNPFGTNECLEFSTKEEEQLIDLKNDMVNKINFEQKGLEEFWISLGKDYPELSIKALKLLLPFSTSYLCE
LGFSALVEIKSKKRERLQTVDEEMRVSLSSLLPRFDVVCSEHQAHPSH
>hAT-38_SM_tp#DNA/hAT-hATm 423-2148 via tfasty with HATx-9_SM, 1 frameshift. Consensus probably contains a ca 360 bp/120 AA internal deletion [Schmidtea mediterranea]
MANSSTRSSCRHGIFGQSSVLPINQLPIQEEVFKCFLWYRNQSHEASSQIQSKRDIMKLVAVDVIAIWAKASIPTIAQHS
VINKMEKDSFQTIFDICSCKCISRGISDRNRRICKMKVPRIEWEFWVDQISERNIVIGNVDLDTSAALERQIQRKEKCAN
LKRESTNSMQMVSGYSVEENLSPQEAESSEGKEDXMECEISAETRISNRDACKVINACLQDMNINTQENLPMSSKLRRQR
ILYRTAAVTNHCISNQELLCIGFXGRIDETRLYEGEPSSLHIVHFKPIIGETDTIFDKLESGLSQDQIYLYRIANVIQLR
FKNSDHYELNYILTASPGNLSQARWLTCANRILRYYIGTKTPSTSLISIVSYILNVYTPSWFRIKTHPYLADGTKNFFYI
VQRIQLFCNKSIRQVPQSSLQKNSYFCHPENVLVLALSDENINVRRDAVQKVVVARFSRKEGEICQFSKSNFIINFQAEN
YFDLIDWNPSFITPAPILNDISDEYLRQLVEAAPLPIPKFHCHTQAVERTVKEVTRVSSKVYGHEARHGMIVSAENSRRK
YENKDIETKEGYFTS
>HAT-10_SM#DNA/hAT-hATm 768-3041 [Schmidtea mediterranea]
MSSMAQATRSQNQLYLLGDSVTVLTGSKLPSLRMTLGFFLHHHLELKETIRQSSAVTITEISKFWVKARIPMREHQNCQT
KLEKTFEEWRLLKKNKTRASPTQLSRESAFVSRLDDLFDVAHADTLNMKSVLQEDKDFLLAQREKGRRGSMAGVDEKLAG
KEKRASERDKKMLAKRQQMIEMKQFADSTVELVSSGSENSSTEDTEKMETENDACEEAVGSIAFRTPKRKRGRKTVVTPE
LAAALDRTKVSDRKAVFVIAETAKSLGHNIDELALNRDSIRRHRVEHRVQRSANIKAEFQGNVPLVVHWDGKLIPDLIGK
EKVDRLPVLVSGKGVSQLLTVAKLPSGTGEAEAAAVFGAIEDWGIANSIRAMCFDTTSSNTGRISGACVLLEQKLKKELL
SLACRHHVMELIIGAVFQVCMGASSSPVVQLFKRFQEYWAIIETDKYEPGIAADDVANLVEDIRQSTVDFAIKHLEQSQP
RDDYKEFLELVIVFLGAAPARGVRFMLPGAMHHARWMSKVIYSLKIWMFKAQFKLTSAEERGLRDVCVFAVRIYLKAWIS
APQASDAPYNDFLLLKSLLEYSSIHSAISKQTSQKFSNHLWYLSQELVSLAFFDDHVNSSTKRLMVSAMQNEEEQDKDHS
KRITVALDSFKTRNLEDFVTAKSMTLLRMLELPHGFLAVDPDLWEDRDDFRQAKETVKSLKVVNDHAERGVALIQEYSGL
LTHDESQLQFLLQVVEDHRRMYPDSRKQTMSGVPHKQ
>HATm-1_HR#DNA/hAT-hATm 549-2921 [Helobdella robusta]
MASFLSTSATRSSRQKDKIYLIGFVTHQITGGKLPSNRQVLRSLFYNIRQVKLNIKDAARLTIKKVFIFWEKARIQTKHL
KDSVAKLEKLHEEWRKLQKNSNRTGPAQTEKEKLFKAILDDLFDIAHQDALQTATEEDKLFLLKQREKGRPGVMGGVDLQ
CVKAEERWQKRNASEMARLTKFRTSSGELIKSRLLFLFNYNDVFYILELEELKSLGSSTSDEDEIEDNDQRTEKVDMVTL
NYGPEKKMKKYTRGTEEIVNEKLFLILDRCAISDRDAARIISATIESLGHDSQQYIVSRSVIRLRRQEFRKERAKLIQQR
FTNSELEGAVVHWDGKLLPDMLNKENVERVAVLISCGEEEQLIGVPLLENGAGSTIAKSVYSELGKWGALDKIQAMSFDT
TAVNTGRIKGACVLLEQLMEKKLLYLPCRHHILEVVLRSVFDAALGKTTGPQSDIFKKFKTEWNSIDKKKFKSGVKDKSV
ASKLINPGQISSYLLEQLTVHHPRSDYKELISLCLIFLERFPSENIVFAAPGAFHHARWMAKAIYSLKIYLFREQFQLTI
FEKQGFHDICLFIINIYVKVWLDAPKPALAPNQDLQLLKSLVNYNKVNKFISDISVSKFINHIWYLNPEQAVFSLFDDSL
SNCVKKRMATKLISQANEDEELDDYCDMKPLIKINEVSEILDKNADHFISSQSINFSKRFNINDQFLHTNPELWSNNEEY
LKSKKIVDGLKVTNDTAERGVKLITDYNSCITKEEDQKQYLLQVIAECRTKFPGCSKASLSEPLPFEQTMS
>HATm-3_AA#DNA/hAT-hATm GENSCAN_predicted_peptide_1|644_aa (3 introns). After removing LINE-insertion and overcoming frameshift around pos 1290. [Aedes aegypti]
MLKRNASFGSAINLLASSIYVSKSTAILDMQKTVNKSKNLTLKRATQENIDFLRDQRGGNRINTLDDAHEVLSANIRKKQ
QKMKEKKILDARRMRAAAQSIIDNSVVEFESTSEDSEKEEVEHSESIRKSQRGTQNVMTLELVQALDAAKASSDAAAVIL
AAAAKAFGVDLXKKTNINRTTIHREREKLRAELASHLMENFNPDDILTVHWDGKIVTXTGTGKAIGEAVIELIEKWNLND
RIKAMSFDTTSVNTGWKNGAASCIERHLETNILWLPCRHHIMELVLESVFHTIMGPTTGPDVTIFKKIQSNWNSFDKDAY
EVPLISGFPDFLKNRVSQIVCFAENSILVRILSRILVLRCYFLHYQLFLQLGQPRDDYREFLELTIIFLGRVPPRGIQFR
DPGPVHNARWMAKGIYCLKMYLFRAQFPQLENTDDLFSVCVFIVGVYIEAWYSAPFAASAPRSDLKLIADLKSFGSFHSD
AAGAAKKIANHLWYLSEELVGLSVFDTSLSFEEREKLVESIKNKQGNDDPPKKRNVTELSICLDELATTNTMEFFKILNI
RTDFFDQPAEEWSTNVEYRRGEEIIVNLKVVNDHAERAVKLMQDYNRNVSRKEDDFQNLLLTVEDLRKKLPNKQKATIRN
FINT
>hATm-2_SM_tp#DNA/hAT-hATm 508-2510 via tfasty with HATm-3_HR, 2 frameshifts. Consensus has aca 300 bp/100 AA internal deletion. [Schmidtea mediterranea]
MATCSTRSASSIWLVGSTNEHFQTSKLPSRGDVLKVLFHYHSVKNMNLKDSIGKSASLLLPIWEMARIPTKAPNHVIEHI
RKLHSDWQGLKKNISRNSATNLSNQAKFQESLDDLFDIAHQDAMSTIRIEEDRLFLLAQREKGRRGKMGGIDRALALKEE
RAMKRKIAAEKYALKINSTTAATEMLPPETLPYDDECSSSQSSDAEPEAGPSTPKAPKPHTARGTVDVVTPQVSAALDRT
NTSDRKAAYIFAAMASTGQLKQDAEELIISSSAIRRARMKHRKLFSSEVKTTFDPAVPLIVHWDGKIMDDLTGPERGKVD
RLPILVSGQDVVKLLSVPKLHDGTIGHQSIDDWGLRDRIKGMCFDITASNTGTKGGVCIRLEAEMDRQLLNLACRHHRFR
YPGAIHRARWMARAIYSIKMWLFRKQYEPLQPGTGCRKSRGPSYSQKIWHHLQEVSLFVTRVYVKYWFESPVAHCAPRHD
LALLCALSEYPNTEIAKAATTAFQRHLWYLSETLIAFAFFDDAVTTEEKRLMVVALQEVEGSDEPLKRIQPFQHPTTKKL
HNFVTKSTTNFFTILGISQNFLQVDPSDWECQTEYQQSQQLVQSVRVVNDLAERGVALIQEFNSSLTRDEEQKQYLLQVV
EDHRNKFSAPTKSSAIDAKLQTMHRSD
>hAT-8_AP_tp#DNA/hAT-hATm 250-2592 via genewise with HATm-1_HR, 1 intron (2199:2296) [Acyrthosiphon pisum]
MSAKLRSTKNGIFLVGDVQHQINGSKLPSNGQVLAVLFYNIREVKLTINESANLAVRECVIFWEKARIPTKSLPNCVKKL
VDLHQVWQGLQKNAKKTQDVFKQRQQAFTDSLNNLFDIAHADALQLIKIEEDKIFLKHQREPGRVGYLGGVDKKLSDKEK
RAQLRATEEENRRMKYLSASNSLVSNEPVEDDLFSISDENIDSPDNQQTTIENTQPETGAILRVPKKNFITSKLVAALDR
CQLSMRDSVFILQATIEALGYNTDEYPISKSSIQRIRTVKRKERAEAIKIDFKNEVPDVVTVHWDGKLLPALNARNCKEE
RLPIVISFKNKEQLIAVPKLDGSTGREQAQAVWNAIIDWDLEEKVQILCCDTTASNTGRLNGACILLEQKLDRELLIFAC
RHHIYELVLKSVFEIKISQVTTSPDIPLFKKFRENWKNVDPNMIQGYREKVEKFFTTSEIEALLTFYHAELTKKIVRDDY
RELIELSVIFLNGDPDRKLKIRPPGAMHQARWMARAIYSLKICLLSSQSKLTSKDKSSLLDVCIFIVTCYVKPWLQCIIP
IKSPNQDMCFLKSLKTYENVEKXISKAALHKFSQHLWYLTEEAAILALFDDEVNEATKIKIVENLTNENILTTGKRYIPS
KDELCGSLYEKNIYDFISAKSKYLFTRLKIDDNFLLESPSSWQTNTSFLKAKNAVSTLAVVNDTAERGVKLMQDFHGLIT
VEEEQKQFLLRCVQEHRSIFPDCNKKTLKRKYVQ
>hAT-45_SM_tp#DNA/hAT-Charlie 660-2524 via tfasty with HAT-2_SM, 3 frameshifts. [Schmidtea mediterranea]
FFQKTCSSTSNTSEIINNYQNDSPQAKRKCIFVRQYNNDYLKFGFILWQKSEEKLPKPQCVICKDVLSNECMKPAKLLRH
LKTKHPTLQNKPLDYFERQSLDFKHQTVFFKKCFLVDKSLVKSSYLVALRIAKCKKPYSIAENLIKPCLIDVCSELLGPT
AGDKMKSLPFSNDTIQRRIVELATDVEDQLIQKVNKSLFAIQMDESTDISNKAILLCYVRYIDHEINEIKEEILCCLELP
SHTTSLEIFKALNTYFENKSINWKNCIGLCTDGAASMTGKHSGVAAKILKVGAVGMIFTHCFIHRQHLVAKKMSPDLNCV
LSQSVRIINYIKSNALNSRLFSILCNEMGSGHENLLLHAEVRWLSRGRILQRLFELRNEVESFLNTKNSELASFFRNDEW
IAKLAYLSDIFSLFNELNLSLQGNSITIFNLWDKIDAFKKIELWRKRIEEKNYRVFHSLEELLNTVNVNTESLSNIISEH
LAAISYAFEDYFSQKDDARKGNMWIINPFVEHGNNDLTDSEEEKLVELSCDSSLKLQFNSKDKIQFWIQVKNEYADLHTK
AMRVLLPFSTTYLCESAFSAMTLIKTKQRNNLEICPALRLAITNIAPRIESLCNVKNQQPSH
>HAT-26_SM#DNA/hAT-Charlie 608-2254 via tfasty with Chaplin4_FR_tp, 5 frameshifts and 6 stopcodons. [Schmidtea mediterranea]
MQRKISKRSQESDSRCEFNKQWEDELLFITSSSGKPFCIVCESTLSRNKEHDLKRHYTTHYQTIMEEKMKLILGSELRKE
YVTKKKEEIRKRQNIFVKVSSEDLAMTEASYEIGFSIAQKKKPFSDEEEIVKPCLQIIIYGNNVFEXKADEIAISRQTVT
RRIEELSQDVFQKLEYLVHSCTFFSLALDESTDICDVAQLNIFISGIDNNFNVFEELVSLESFHGKTRGLDIFEKVESCL
ENLKIDFNKLISVCTEGAPSMIGKVNGATTLLENFLKRPILKYHCIIHQEALCCKTINIHYVMxPVVKFLNKKRAKGYSE
MRFxRLILHTGSVIVRFWKLKNAGFYFLEQENQLPDERTLLFDKKWLLDLAFLIDVTSHLNDLNLKLQGKNKLFPNLVNS
VSSFKMKLKLFISQLENKDLSQFPHLKEQSEFAADKSSLTKYIEKIKILQESFESRFHDFTKEEDCMLAFINPFSLSEQN
VxCRCLVTYKWNxLIxKQIHSxKMKFDELLKDQNASDIINFWHSLPNEHFPELKKVCKKIHMSLWNDIQM
>HAT5-2_NV#DNA/hAT-hAT5 329-3106 (1 intron) GENSCAN_predicted_peptide + tfasty with hAT5-1_NV (1 frameshift) [Nematostella vectensis]
MQHGGLSTTMKGHCIYNAKWERDPLYKKWISPFKGNKKKALCRICDRSFDxSSMGESALKSHAKGAKHINYLRLKNDTSL
LDFGFVSAAKPSTSNEKQGEVTAKCTTETPAGAEVRKPDTIQSFLTKDDVLRAEILWVLKLITSHQSFNSSKDMSELLPK
MFPDSKIARQFKCGERKASYVCIFGLAEHFKMELQESIKGPFVVLFDESLNKKMQAKQMDIHVRFIVEVIVEGTNEVRTR
YFGSTFLGHGTAADLMDHFTKCVLESGLSVKDMIQVSMDGPNVNWKFFNDLKKKIFDDYGIILINIGSCGLHIVHNSFKR
GISATGWKVESFLSSLYYLFKDAPARKEDYCTITSSTLMPLKFVKHRWLENVPVCQRALDIWDNIVKFVKAADEGKITKP
QNKSYEVIRECVKDKCFVAKLHFFKCIANQLQPFLTKYQTEKPMVPFLSDELCMLIRALMRRFIKHDVMEQCSDEKLVKL
DLTDKKLYINHKRIDIGYASEKLKAAKPSEGEVLQFRMECRACLIDLLTKLQEKCPASYSLVRHLSCLNPVNMAKDKESC
SIKFKKVLTLVLNSGRISEKDCDSLLQEYNLFLDNIPVFGSLHFTSFNSANDRLDTLFHEFMSGDDYKLLFKFVKLVLVL
SHGQAAVERGFSVNKELEVENMKEQTLVARRVVCDYVKTVDGLANVEISKPLLLSVKQSRKRYELYLEQERAKTKSAVEQ
EKRKSTLEEIEEIKRKKRRLDSDTETLNDTADQLLQKAEDEGNLRHLTQANSFRRTAKDKMDELVQVDISLNEKLKQLKE
>hAT-7_AP_tp#DNA/hAT-hATm 329-2714 via genewise with HAT-10_SM, 1 intron (852:942). [Acyrthosiphon pisum]
MPRLQIYLIGPMNNQITGSKLPSKRDCLSVLFYNMRLVNLNLHDSSRLVIDECSIFWKKARIPTHDNSDCIKKLKKLYEE
WRKLDKNKTRTTELQKTHENKFEEQLDNLFDISHANALNLIKIEEDKQFLFRQREKGRPGCMLGTDMKLAGIEKRKATLK
ENEDGRKKRREMETLKLTERIRLYSSSSSEDQDNTLLEEVLNETPGCSLPMPSSSNPIRAKKSIMTSRLSAALDKCKISD
RDAVHLLTAAAESFQVNCLEFTINRSTIKRARENFRKQSSEAIKSTFIDQNLNYVIVHWDSKLLPDILSKENIDRLPVIV
SASNVEKLLGVPALTSGTGEKISSAVHNLLLDWNLVDKVQAFVFDTTASNSGRLNGACVLLEQLLNRDILFFACRHHIFE
IVLQAVFAHVKITVMNGPDIPLFKRFKNHWKNIDLSNFRIFSTFQHSHTNLKDVANNISLFCIQRLNDNFPRDDYREFLE
LVLIFLGGSPPRGIKFRQPGAYHLARWMAKAIYCIKILLFSDQFKITTREQNSLDEVCCFIVKCYIQEWITAPNPVTAPM
NDLLFLKKLKNYNGKLGEVAIRKFINHLWYLNEECAVFSIFDDRVNNETKQRMAKYILEGKEQYSNNSEEENEESKKKLN
LKFDDLTHFLNKDHPFDLLTNKSWKLFERFQISDIFLRAHPSTWKDIEEYRQAKEVISSLKIVNDAAERGVKLMEEYNQK
FSKNEEQKQFTLQVNIKNQSNLQSKMPNNSIYFSGCSRISQNIFRLQS
>HAT5-4_NV#DNA/hAT-hAT5 1-2706 via tfasty with hAT5-3_NV, 2 frameshifts and 4 stopcodons, 1 forced intron. [Nematostella vectensis]
GKCVFNSSWLLDKHFSCWLSSKTDKHSAYCKLCNKKFSIATMGISALKSHIAAKSHQEHMKKQGNPISAFLKPMTSGDPS
DTPSPITPCSPLTSSMENAPDGTSTDASQNKDKRSxFQHLSSLAKRVTDAExLWAFNCVDSHFSAASNIGMNALFxQIFS
DSEVVSLYSMSDSKYRYLATFGIGPYFSKMLTNEVKASPARCILFDEFLNDELQKKQLDVHVRYWSDETCKVESRYYTSL
FIGHGRATDILRRSDKRLDAPKTWQVGMDGPNVNVSFHNKLVHQRKDLDLPHLLDLGTCGLHIVHRAFQTGAKTTGWNLD
QYLMKEYKLFEDSPARREDFVQYTGTSVFPSKFCNxRWLENLSVATKSLELIPILKDFCSQAELKKTEPQNTQGYNIVKR
AASSDNLLKAKHLFWISVLQDFQPFLVLYQAHRPLIPLLASNLEKLLRNIMSRFVKENVMTSATTYLKLADVNVSSAEEV
KSAKSVDVGIATQRELATLRHDRKITQAQELEFMAQCKSLLTRTTEKLLEKCPLKYHIVPCLRCLDPQVLAGPVAKSAKL
FERLLNCLINVKRVNEMDADSLKREFQVFVTETIHRNPQTLLQFKNYDKVKDERVDTLLASLMRPLDNLHKLWGLVQGLL
VLSHGQASVERGFSINKEMMNYNFKERSVVAQRIIYSHIQKCGGVLKVAIDQDLRNAAKNASSVYxNELRKQQQMEEGKE
KEKANRVVNDEIVAAQTRRRQLLEDCIHLKESVDRLMILAEKDRDLLHVTKANSYKRTITDMERGANGLDAKIEGLKKK
>MuDR-13_SBi#DNA/MuLE-MuDR 1068-3281 [Sorghum bicolor]
LMQEEMSGFGSLLEYNEIVRQMFGNEEEGFQFYNNYAKEKGFSVRRSYCEWDSGHNEITLRKFVCSREGFREEKELKRES
KKRKPRNITRVGCRAKLVIARDQSTEQWYVKDFIGGHNHPMAEPDVACLLRSHRRISDDQKAEILEMQISGIRKHQIMDI
VQKQYGGYDKVGYTMRDLYNFCHRNKLETVAAGDAQTVISYLTECKRRDPDFFFQYKTDREGHLKGLIWCDCQCRLDYRA
FGDVVVFDSTYKTNRYNLPLVPFVGVNHHGSTVLFACGIVAQETIESYVWLLSTLSDAMAQKHPVSVITDGDLAMQRAIR
VVWPNSSHRLCIWHIEQNIVRNLHDDGVKNDFRYFLYDCCSIEELEMKWLEFLDKHNVTDQESWLYQMYERREIWCAAYH
AGKCYLGLRSNQRSESLNSRLQVNLDRKMTLFELVQHFDHCLSRLRSNEAHLDFDAENSEPMLQLDASTIEKEAAKMFTP
GVFAKVQFSIKAGMKCFMREHLDGYDLQTYIVGRVDKGDKEYFVKCEICVDEGTLKRISCSCLKLQSLGTPCSHIFFVLG
YRDERKLPECCVLKRWTMGAKSAFPPIRKSTMYDYSDSLQRYRELRNISHTASFVASRSPEAYERLKRVLHEEAAMVLPN
GGENGGNKFGPVLPQAQHIDSTESTNVLDPMHVPGRGAPKKKVKSVSNKKKSTVKCTLCKEEGHNRRTCPLRKEVVKSNL
HQQQCLVCDACVVMTYD
>Mariner22_CB_tp#DNA/TcMar-Tc2 476-1922 wised with Tc2_FR5  [Caenorhabditis briggsae]
KRGAHPLDYKLTVVKWAESKNNTEAAKKFGVSRQNVQQWRAQKEKIIATIAENGKKKKRLDGAGRKVNDKDFDTKLAEWV
REQREKKLRITRIGIQNRAKSISNSDMKVXKTDYLLEXNIKXLQFSNGWLVSFLKRHGFSSRRATTVCQKPPEFYVEKII
DFLLYVERLITMNNYDKIFACDETAVYLDCSNSLTVADRGSKQVSTLKNNKLNXQFQVSVKTTGHEKLHVTVMLCARSDG
FKCKPFVLLPRKRPVQSIEETFRKTLQLVWCDRTFFNDEITKTFLEKVLGHSMFGKRLLVWDSYRCHISTDTKKVLKQLR
LDTAVIPGGCTKFLQXVDFIETLRDPIFQAPDVYWNAMFKSFIRKEYEDWMVHGTKSFTPAGNMRAPSMEVYLKWIQLAW
ENIPKEYIVRSFKGCGLKNGRNGEDDEAIHCFKKDGEIPEGVQLLKTRRAEREMEEIQEILGDIEIEEDDGEMNHAEEED
NN
>Uhu_DAn_tp#DNA/TcMar-Tc1 374-1391 via tfasty with UHU_tp, 2 frameshifts and 2 stopcodons. [Drosophila ananassae]
MAPGTTIEQRELVLHHFKSGKSWRAIDEIVSLSPSTVQYIIQRFVRKDRIEDKGRNAPNKIFYEHEERRIVLKIKESPKL
SASKIVAEVAQEMGKKFSADTVRRVLHDHNFNGRVARKKPLISKKNIAARLKCSKEHLLHPISFWDDVIFADESKFNLFG
SDGRQFVWRRPKTELDNKHLKATTKHGGGYVMVWACMAASGVxNLVFIDGIMDAKMYLNLLKENLLQSADNLGIRDRFRx
YQDNDPKHSASIVKTWLVWNCSQVVITPAQSPDLNVIENLWEILDQDIRKRKISNKNDLKTALLEEWGKFPVEMTKKLVF
FSLRTRLTAVQNQKGGHTKY
>Tc2_FR6_tp#DNA/TcMar-Tc2 269-1357 wised with Tc2_FR5 [Takifugu]
QKIEKCSDNLEKSGSKIGQVNRXLRRSYDANFKMMVINEAESSNNCKAAVKYGVxECNVRRWRAQKDRLKNAHSQGKAFR
GPQSGRFQELDRRVCAYVDGKRKDGTRISRAVIRLKAVEIAEELQIPTAEFRASLGWCKRMVRRHGLRLLAQRLPPDSYL
DQIGNADQKPVFFDMPTPVTVHEKGEKSVIKSTGNDESRVTVMLGRTELPPYEGLKRKTVPKEAMPAGVMVRAQEKGWME
TELVVDWLKXCVGGLRKKRNMLILDAFCGHLSDPVxKQVKAMNGDLVIIPGGXTGQLQVLDVVVNKPFRDNLPKKSxEWL
LSGDHALTPTGGIQKPPVRLLCEWILHAWDAVSPKSIIHGFKK
>SMAR2#DNA/TcMar-Tigger 225-1958  [Schmidtea mediterranea]
MAGTSKTNKSKRSVIDLETKHKIILQFESSKKVKDIAYDLKLSHSTISTILKDKKRILEAVKESTSMNSTIITKKRQGPI
HDMEKLLVIWMEDLIQKRIPLSLAIIQTKACSLFNMLKSKEGESYDQTFTASHGWFQRFKKRANYQNLKISGEAASADHI
AAEEFVVKFNEFLEENNYTKEQIFNVDETGLYWKRMPERTYIHKEEKSMPGFKAFKDRITVLLGGNIAGYKLKPFVVHRS
KNPRAFKGVKRNMLPVHYNSNKSAWMTQLLFEDWFMNVFATEVKEYCNQHKIPFRILLLLDNAPGHPPHLGDLHPNIQIM
YLPPNTTSILQPMDQGAIATFKAHYLKITFTQAIMAIEEGITLKEFWSKFNILQGIINLASGWKEVKASCMSGIWKKLTK
IFEESTSSSIEKEVDIEEITDQIVDLGRQLNLEVDSEDINQLIAHQLDDLANEDLLEFEAQCVGENVDKGKSDEEESPQK
KFLVKEMSDAFHQINKGMRKLQQMDVNEERFSEVNKLIQKNLACYYEIYREMKPQTVQTTLDRFVKKTRIGYSVSEDNAM
DCSLVISKHDDDTKITLS
>Tc2_tp#DNA/TcMar-Tc2 2 introns. Sequence closest to gi|37859215|gb|AAF39819.2| Hypothetical protein F45D11.6 [Caenorhabditis elegans]
MPSNSTTGAQKCSRKVHSLKFKLEAIEYASKFSKTKAARDLKVSRQCIQDWVAQKTKIESQLKSTNKTAPKRLEGGGRPV
QRETVDESVLRWFRDQREKKFRVSRNLIRQKAKEICGEDDFKASTGWLQKFMRRHHLSTRRATTTCQKEPDEFAKKIVDY
VLFVEKMRLQNKYTDTHIFAADETAVYLDFSNSLTLNEKGSREVPVKTTGHEKMHVTVLLTARADGYKCRPYVLLPRTRP
DKEIAARFKNSLQLSWCNRTFFNDEVTEDYLNTIIGPPFFGKRLLAWDAFRCHISDATKRVLKNLKVDTAVVPGGCTKFV
QAPDVYWNSPFKASIRRSYEDWMVHGQKSFTKSNNMRPPSMLQYLEWIENAWNDLPKDLILKSFKGCALTIATDGSEDNQ
VHCFAPNGSIPSGLDLLNSTRIENSLVDLVQDIGIDESQEEGNESDNSIISVG
>Tc1_PP_tp#DNA/TcMar-Tc1 gi|12666718|emb|CAC28060.1| putative transposase; 77% identical to Tc1_RT [Pleuronectes platessa]
MKTKELTKQVRDKVVEKYEAGLGYKKISRALNISLSTIKSIIRKWKEYGTTANLPRGGRPPKLKSRTRRKLIREATRRPM
VTLEELQRSTAEVGESVHRTTISRLLHKSGLYGRVARRKPLLKGIHKKSRLEFARSHVGDTANMWKKVLWSDETKIELFG
LNAKRYVWRKPNTAHHPEHTISTVKHGGGSIMLWGCFSSAGTGKLVRIEGKMDGAKYREILEENLMQSAKDLRPGRRFIF
QQDNDPKHTARATKEWFGLKNVNVLKWPSQSPDLNPIENLWQDLKIAVHRRSPSNLTELHLFCQEEWTNLSISRCAKLVE
TYPKRLAAVIAAKGGST
>Tc1-8_DR#DNA/TcMar-Tc1 365-1387 [Danio rerio]
MMGKNKELSQDLRSLIVEKHFDGNGYRRISRMLNVPVSTVGAIIRKWKKHKFTINRPRSGAPRKIPVRGVQRIIRRVLQE
PRTTRAELQEDLASAGTIVSKKTISNALNHHGIHARSPRKTPLLNKKHVEARLKFAKQHLEKPVDYWETIVWSDESKIEL
FGSHSTHHVWRRNGTAHHPKNTIPTVKFGGGSIMVWGCFSARGTGRLHIIEGRMNGEMYRDILDKNLLPSTRKLKMKRGW
TFQQDNDPKHKAKETMKWFQRKKIKLLEWPSQSPDLNPIENLWRELKIKVHKRGPRNLQDLKTVCVEEWARITPEQCRRL
VSPYKRRLEAVITNKGFSTKY
>Tc1-5_Xt_tp#DNA/TcMar-Tc1 298-1374 [Xenopus (silurana) tropicalis]
MGRGSPIPTMLRRKIVEQYQKGVTQRKIAKILHLSSSTVHNIIRRFRESGTISVRKGQGRKTILDARDLRALKRHCTTNR
NATVKEITEWAQEYFQKPLSVNTIHRAIRRCQLKLYSAKKKPFLSKIHKLRRFHWARDHLKWSVAKWKTVLWSDESRFEV
LFGNLGRHVIRTKEDKDNPSCYQRSVQKPASLMVWGCMSACGMGSLHVWKGSINAEKYIQVLEQHMLPSRRHLFQGRPCI
FQQDNARPHSASITTSWLRRRRIRVLKWPVCSPDLSPIENIWRIIKRKVRQRRPKTIEQLEACIRQEWESIPIPKLEKLV
SSVPRRLLSVVRRRGDATQW
>Tc1_FR1_tp#DNA/TcMar-Tc1 145-1188 [Takifugu]
MGKKGDLSDFERGMVVGARRAGLSISETADLLGFSRTTISRVYREWSEKEKISSERQLCGRKCLVDVRGQRRMGRLVXDD
RKATVTQITTRYNQGMQNXISERTTRGTLKKMGYSSRRPHRVPLLSAKNRKVRLQFAQAHQNWTIEDWKNVAWSDESRFQ
LRHSDGRVRIWRKQHESMDPSCLVSTVQAAAGGVMVWGIFSWHTLGPLVPTEHRLNAAAYLSIVADHVHPFMTTVDPSSD
GYFQQDNAPCHKAQIISNWFLEHDNEFTVLQWPPQSPDLNPIEHLWDVVEREIRIIDVQPTNLQQLRDAIMSIWTKISEE
CFQHLVESMPRRIKAVLKAKGGPTFY
>Tc1_FR4_tp#DNA/TcMar-Tc1 402-1403 [Takifugu]
MGASKQLSDXLKTKIIQHYGLGEGYKKLSKRFQLSVSTVRNIVRKWKATGTVLVKPRSGRPRKIAERQRRRMVRMVKNNP
QTTSKDLQGYLAADGVAVHRSTIQHNLHKERLYGRVMRKKPFLHSRHKLSRLRYAKEHLDKPISFWNKILWTDETKIELF
GHNKRRYAWRQKNTEFEEKHLLPTVKFGGGSIMLWGCVASAGTGNLVKIEGRMDSTQYQQILENNVQESVTKLKLRRGWV
FQQDNDPKHCSKSTRAFMQRNKYNVLEWPSQSPDLNIIENLWDDLKQAVHARNPSNITELQRFCQVEWAKIPSSRIQTLI
QAVIFAKGGSTKY
>Tc1_FR2_tp#DNA/TcMar-Tc1 319-1344 [Takifugu]
MVRYLDATEVAQVVQLLQDGTSIRAVARRFAVSPSTVSRAWRRFQETGSYSRRAGQGRRRSLNPQQDRYLLLCARRNRMS
TARALQNDLQQATGVNVSDQTIRNRLHEGGLRARRPVVGPVLTARHRRARLAFAIDHQNWQLRHWRPVLFTDESRFNLST
CDRRERVWRCRGERYAACNIIQHDRFGGGSVMVWGGISLEGRTDLYRLDNGTLTAIRYRDEILGPIVRTYAGAVGPGFLL
VHDNARPHVARVCRQFLEDEGIDTIDWPPRSPDLNPIEHLWDIMFRSIRRRQVDPQTVQELSDALVQIWEEIPQDTIRRL
IRSMPRRCQACVQARGGHTNY
>Zator-2_AA#DNA/Zator 350-3890 via genewise with Zator-1_BF, 3 introns (1638:1696, 2198:2349, 3246:3308) [Aedes aegypti]
MKLNLFYREFGVEFPTTRMEQVPIAVRIEKEGKQVLQAIVSVPTTSSFQSIIARVLGRIENGHEKIDKIYTGSLSMEQKD
LFEVDQTSVLQDASRVIGTCTKVLCRLKSTLEPSKQPKNAFHQMMQSASAAVYPEKKVEKDGRDQLYNCVVQYLKTMNAG
FGRFQKDDMQAFMSVIVSALWYLDGQSEKIASAPGVRSVPKRFCFTPENGETFRVLTHGNMRKKPLPRMTRDEMIVVFDR
LDALCATGITKSKSWSEVRSDVEGLRETFAGYINYLNQVENRAENETIDDSKLHDNRSLKTVPGSSSQSALAKLMYKPLH
QFLIQEEPCTPVNLILYAPVERKARYKYIQGLCFEFDVNVYRSFKPNATFVWRLPQERSESQIANTIHRLESGLADRIRV
DKAKRAEEAFGGLASWTDKDLNDFLTICKDDKDTDDANSEDLSDTVKGVQLLLNDGHEVEDVILLRDQEQEARDGKFNNF
WKAVEAVISENDLAVAQERRHGTTSWISPLCVSLRDLMEKSEEKMNQLFPESLMNNVPSMEFFRLQFSPRNSRTNSAKRY
YSRFDIKYGLQIRTLRKSHPDQHYGAKQFQYMKIMAGLFCDTSIVFFLDDKAAIPVGFEGAPVSATRRQRSVLKAGLDNR
GLNALDHDNIPQHLTPSITIKLIPPSELSNAWYAGQPYIIIKDAIFQHSTAFRHASELVARYSKNDLERPMLFIGSDGGP
DHNLTSIMVMLSYIAIFLHLNLDFLCAVRTPPNFSFINPAERFMATANLALIGVSLSRNHLGENEKFVKNLLSKKQWREA
QEKHPQNDYPRLALEGTKDARELLQSRFESLCYKGEKVKVFPAASEESIQAIKSEITNQWPALNLNKISKAQAMSDSSFK
QFFDKHVKATAYTFQVKKCQDESCAYHKSKRLDLNVNWLPTPELKGDKYKSFDEVYGSEPNDAYQPSKTKTSRGDSLPQP
SFPLASTRARLIVNCTECKFPRVLYSRYSLNEKELFDTKRFFDENYYICGSQLETFPDIFQHPKISCFDPIHLHYYQCPS
LKGYKNMCAKCLSSNANITYNKINLCEKCHSPKSKTVVVKQPKGRSVKK
>CR1-1_BM_pol#LINE/CR1 274-3162 [Bombyx mori]
MIYFFSLSLMANLKIFYQNVRGLRSKTNLFYRNIILCDNDIICLSETWLMPGIYDSELFDERFVVYRCDRNYNSRNDSLG
GGVLIAVRRGITVFNLTCLPSNRNRSADIISIKINIKHNNVSKLLHLYCCYFPQCSSQFEDEIGFFEDISDTIITNPGDE
FLCVGDFNIRNASWELIGVDGPARLLNGDRWDSLVFGLSNFLAFNSFKQFNSISNINKRCLDLVISNCACKVVRSSLPLV
SEDDHHPALDIQIQGLDVRPLRSPGRSILLFHKSDYSIINEELSKIDWKQSFMNLDVDMAVGKFHEILDKIISDNVPVKV
VRGNSNFPYWYSSALIKLIKEKRKFHRKWKCYGRLADYSSFSVLRERQKALKICCYNAHITKCEDDILKCSKQFWRFVKS
KRSAGDFPNELFLNDRCSSDGSEICNLFNVHFGSAFLTNNTQSASSLSYTPASYDLNCVDISSFFISVGKVKQYLKNLDI
SKGAGPDGIPPVFLRQCYAQLCYPLHLLFNHSLSTGVMPRIWKRSFVVPVFKSGDKHNIANYRPISKICAIPKMFERIVY
DFLFPLIRPHIIEQQHGFISHRSTETNLCEFLDYVLSSMEDGHQVDVVYTDYSKAFDRINFDILIEKLHGLGVHGDLLRW
LESYVRDRSQAVTFNGFCSSFAPVPSGVPQGSHLGPMLFNIYVNDVSNVFRKSKFIMYADDKKVYKVIKSLNDCLELQDD
LNNLFVYCQNNLLTVNTNKCTIITFSRGRSNILYDYSINGQTLVRTTVVRDLGIYLDSSLIFDFHVNEIVNKAFRMLGFI
LRVGKDFKRPSTLILLYNSFVRSILEYGSVTWNPQYNIYIQRLERVQKKFFKHLLYHCRRFNSPEPTEFVSLVDRRLLRD
QMFLYKIINNEIDSSYLLSKISFKCSRISARSKQTFHMSTARTKYASNSFVRRSCRLYDAKFSNADIFCLSLVAYRKAVL
ECL
>17564434_Cel_pol#LINE/CR1  gi|17564434|ref|NP_507366.1|  predicted CDS, endonuclease/exonuclease/phosphatase family and RNA-directed DNA polymerase (5R694) [Caenorhabditis elegans]
MPPKKKVDSIPKDTDINKSLLVEDQSTSMDIDAEMTSDSPKSKRKRFINVKKSAVPTIGSLNAKVFKLEALCNSLDLIVR
SQQIMIGKLQSELSKLHLEGEKSKEKVSGTDNIDCASPLSLRKVRSPTINSVFIKKPAANRALYTSVIQKNPILKQVSDT
LELVSTTHSYEKKSNLAVLEHLPDAKNPDQVSSDFDLVKSFSLEFSLPVPTEVFRVTCKNPNIVSRPTKVRFSSESHRDE
FLNGFYKNWRSFSAIPKSSRPIRARRDLTPLELVGLRELRKEAYEANKAAGCIAHVVRDLEIVDLVTPRPFPTYTIASPE
KLAFVHNFLASNSIDILFVTETFLDDKFTNSLCSNPHYTCIRSDRLNCHPKKHGGGTAVFFQNKLALTPVFIPPSFYPKH
FCEILALDHKPSKTRFILTYRPPSIAVRRTSELFNNLNHLIDIPTYSFVLLGDFNFANTRWNSNNLPLNSEYLFNWMKFH
NLVQLVNFPSRFTSSNKGNYLDLIFTNNPDILQNLKPGSPFINSDHVSIHFSLALPHTPTPVILPKSFLNFRKCDFLQLN
NHLAAYNWPKQFSYFATPDSKLNHFLKIFNELISDFTPRCSITKAQCQKITGKKLYRKLRKLHPNSISSVLKSKVKPRLK
FLKKKNVNLENKIINCKNSKNLFSFIRNRIKPSTSLTHFSIDNVNVDNPLLMAEVLVKEFAKSFTTHDPPFPTFPSCQST
LSPIDTSPITIASTILKLKPKIGYSQDNINFFVIKKCSDSITIPLSLIFNEFLTSKSFPSCWKTSIVVPVYKKGNSSDPK
NFRPIALTHPLSRLFERIVLNPIMKTFSPKISKFQFGFLNNRSCTTALLNASSIYHKILADPNQYIDIVLFDFAKAFDSV
PHELLLSKIRNFGVDDNLCAWFRSFLSNRVSKVKIGDCLSDSSYKNSSGVLQGTVTGPFLFLIYINDILEQFPPDVHAMA
FADDLKLFSNNCKSLKSSISLIEAWCTKWQLNLAENKTNVLHIGKKNPKCEYYVNGQKIHSCSKARDLGIWIDDRLAYDK
HIIIKVNAAMFKCRQILKNFQSLNMPFYFKLFNIYIRPILEYGCEIYHPKSSSLSAKLEQPLRFYSRHVFKRCKISYDSY
DHRLIQADQSSLEHRRILLILKTFHNIITGKYYFHNLAQYLKTSKSPRFPYQMTAIGKTNNNSFLHTHLTIWNKISKLFP
VPVSGNTFFKRISCLPLNEYA
>CR1-1_CQ_pol#LINE/CR1 1849-4824 [Culex quinquefasciatus]
MTPSQEAVSTINNLSMSPKISSTEQQNANEILIYCQNFNRMKSPGKMKEISLNILSHSFDIILGTETNWDESVHPEEIFG
NNYFVFLGNRNLNLSQKKSGGGVLLAINARLNPKEIVTEKHFQFEQVWAKATIAGQVHIFASVYFPPDHANKQSYELFFK
TVEIITSKMEPEVKLHIYGDFNQSKVEFISDQENEAILLPVIGENETLHFLFDNIANYGLFQINHVKNQRNSFLDLLFTN
CIEDFHVQESVTPLWKNEVFHTAIEYSIYVHKNTLPIDWEYEEVLEYNKTNFVEAKRKLLAIDWQNLFNNEGNVDELVGK
FYTEINTITSETVPTRRRRRNNTGNKYPVWFTPQLRNLKNRKQKAYKLYRNNTNDTNLLNYLNISDHFFSALNSANEEYN
SKVESEVKSCPKNFFNYVKSKSKSSNFPSQMQLDENVGSNSKEICNLFSKFFKEVYTSFSEEDRDRDYFSYIPEFPNDVS
VNSLSETEVRQALKDLDSSKGPGPDGIAPAFLKNLAEELTYPLHHLFNMSINTGKFPQTWKKSFLVPIFKSGPKSDIRNY
RGIALLSCIPKLFESIINEKIFQQVKNRITCKQNGFFKGRSTSTNLLEFVNFTLNAMHNRNFVEAIYTDFSKAFDRIDIP
LLIFKLQKIGIQPNLLEWLKSYLTKREQIVRFQNVLSESIHVTSGVPQGSHLGPLLFILYVNDISFILKKINVLVYADDM
KLYMEIGNANDSHVFQNEINLFYTWCSKSLLQLNVKKCNSIAFSRKHETPNITVLLGNQPVEKCKVVRDLGVILDSQLTF
VEHYNTIINKAKSTLGFIKRFAFNFQDPYTIKLLYITYVRPLLEYCSIVWNPYYAVHQARIESVQKQFLLYALRKLNWTA
FPLPSYEARCMLINIQSLQERRKFAMLSFINDIISQRIQSAALFSVIRNSIHEPSRTLRNSPLFRITAYTTNYLKNSPLN
QMMRFYNENSQYIHFDMSKPELRKNLYNRNNI
>CR1-1_DEu_pol#LINE/CR1 1385-4354  [Drosophila eugracilis]
MAFDDICSTNFWPQHIFVQEHQLKNKKRKKSPFRSKASTSKRSCQPKKLTSSIILXYQNTRGLRSKLSNLFSVSFSFASQ
VIVFTETWLTPEILNSEVFPSRYTIYRLDRSLGNGGGVLISVDSNLVSEVINLQTGDLEFITVKISLSRLNLYITCSYIP
PKSDSLTYERHLAAIQSVFSMLSDMDQLVVLGDFNLPQVAWSMNDNTLALTPTSHHDFTAGMLDMSLAQINHIGNSLGRL
LDLCFLSDTDAVSIYRAPPLTLPEDPYHPTLDLTIDTGLCTKPKNNYADKKIRCFRKADFKKINNFISEFDWSDLYACTD
MSTALDIFYSTLNLVFDRFVPLRYPAMADKPPWYTRHLSNLKNIKLRFFKKYLRTNSNDCYVHYMVARSNFTVHNTQCYK
NYLARCKNQFALDPKQFYSFVNTKRKSKTFPSLLSFRKXTASTDQEIADLFAQFFQTTYSPLLINAQTYAYDIPRSNFIS
RPTLSECGVIKDLQNVKPVFSPGPDGVPGCVLRYCSATLAKPLLKLFNLSLETSTFPAIWKESLIIPLHKKGKKSDAENY
RGISKLSAIPKLFEKILVPHLQHQCRSVISPCQHGFMKQRSTTTNLLELTSFVITGFQNKLQTDVXYTDFSKAFDSVNHG
LLLEKLDLIGFPTDLLGWISSYLTGRTQRVLFKNSVSALVYASSGVPQGSHLGPLLFTLFINDLPLVVNDSLVLMYADDV
KLCLQYTDASYQVKLQSDLNNFQNWCSANLLNLNGSKCKAMTFCRLRPKVATYTLHGVALERINAVEDLGILLDAKLKFS
DHISSMVNKARGVLGFIKRWSKEFNDPYVTKTLFISLVRPILEYGSCIWDPQYGVHQCLIESIQKNFLIFALRGLNWDAN
IHLPSYKSRLLLINLPSLANRRTMLGVVFIHNLLKGEIDSQALLGRLNIHVPLRITRNYIPLSLEHCSSNFAQHEPFRVL
CSNYNDLYNITSNSSPNTLKVSILIHLAQN
>CR1-1_DBp_gag#LINE/CR1 50-880  [Drosophila bipectinata]
MSPLVCTECSAEVTATQLRGCEAVRCASICRRAYHTACVDLPSEAIKLLINIPNLMWQCDSCVIGNDSHSKIDELNHKVL
DLESRFESLNAKVDLALVNGAAVPAGRASSAGVHVVAPPAMPTSTGSIKATLGQAPTASKGAVPKKKRINPNRRIVGQAP
SCAQLQVLPTLKYLHVGKFATSTQPDALCKFVADKLNVEPNDLVCARLIKKDADINALKFVNFKLGVPEQNFPTVFNDDF
WPMSVKVSRFVHREPAKVIDLPAILPLPHSQSSKNPQ
>3834287_CE_pol#LINE/CR1 gi|3834287|gb|AAC71186.1| Hypothetical protein C49D10.1 [Caenorhabditis elegans]
MSSKMDSRNVGRCIYCHCCHYILGDFNLPQFKWNPSGCTNPSMQLINFMTSGNLSQMVTRPSRISNSGTKNFLDLIFTNV
PETITHCDLLPNFLLSDHLSISFTLQMHTRRTNKKIADSTEPRILFRKCNFRELNAHLSSFNWERQLSYFSSTDTKLNHF
LKLFNELIRFYTPTSPVRYYKTTSDKSRIRKTVKRNIPLVTAVNFKKRVKRELKFIKRKLAKQEYDVVNSKSPRSLFQFI
KKRISYSPPLTCLTKEDVIITDPAQMCNEFIRTFAKSFTPECDPFPALPARQPHKYSIDFSPIRIAGIITKLAPKIGFST
DVINFFILKKCCHSISVPLSLIFSDSFNCGKFPSSFKSSIVIPVHKKGSLTDCNNFRPISLTHSISRLFEKVVITSLKRE
FHSNISSQQYGFQNSRSCTLALLESTSLIHRILSTRNNSFLNQRTSRVKVGNQISQDTLHVTSGVPQGTVAGPYLFLIYI
NDLLDQFPPDVQVFAFADDLKVVGDNHQSIQESANIVARWCDIWKLQLAENKSAVVHFGRNNPKFDYSINGVSIRKHNSF
SDLGIVIDDNLKFEKHIISISNAALLKCRQLLRSFQSSNAQFYFKLYNTYVRPILEYGCEIFHPSTIALSDKLESPLRFF
SRKVFQRCNLKFSSYYDRLSQFELKSTLHRRLLMILKTFYNIVTKSYHFPSLFLYVKCPRSKRFPYMLCSTGIPNKGLLH
ANLSLWNHVARLLPKIMSPSAFAARINSIPVTYLIPST
>PIVE#DNA_virus 2788-5676 [Schmidtea mediterranea]
MKMHFEKQEHAGLAERDRLNAINATAQIFNVFATTTFGKVQGVLRQAKMTATFKSNPYQQLLLSNSFKSLSSDLFKPLKI
NQTFKNNILNYTVSNIIRPGMKGFMKKIGGVKQNINDLAAVAGFTIGFYISAYIRSFYAEPLELYVKDHLKPYDNKYLIK
AFNEISNHDGYVDITNIFLNDLXLDDFRLFKEKDFEEIYQPNRXKDFKDLFNLFDKQVAEISIYNGIKMLEKALFTHEKE
GDEIGDGIYXLIKXDDDMKRLLDDNVGLFEQLIENSKNFKNQNFLGLINQYERHWGPDVGKPGDLHRYVNFYTNMWYHLH
YSQGTLHDPKHLPPGYEGKQPLAEIISRFPYXVVRKKRNVSYKAHTRLELNKKFDDYLKLNXXQYHTGPKINTKGLPDLH
YRRLSAIQLNMLRYYYHNNHHKSATHEEWKKIVDEKIKKYDTHTESXELDIDDRNKLHHWYISEHLLQTHEDGVTKYRGT
LPAINAFNNLFSXINMTTHAPNTTTAPVVPPSAIPGSGGGNGILRSQQGDFRPSLDNNSLTFTSTNCGASCIETTATGEW
YNFPVEYYYPHTMYGNPDFWAAMEXYLWFKPVAMEFEMFNLQVVGETSPQNFSGLQNQVELLVFRDEANIYGPCAAPPQM
AKAFKDIFLNEASLHNGYNINNQLSKLTPITLPKAGWIYYPETCPEVEIVNCNTSETVNYSYQASKVQHPRYIREFWDQH
FDLTIAKDXDHIKWHRFDYFNCKKIKPFSYANALGRRTITTDKRVMPFPSKIYCPKWKRKWDXKLKRQHYEYVFGEMTLH
KKLLPTDKQLLIDEWYSTKREAVEEYXGHCHQEDVSEHNPMKMMFFKLNTMIGPGGNKINLTCTFNWKIKYTFELFGKLP
TTNIRQIYKVTDPLLQGTQTWQPTTKWLTPSIPYCTPYFFYIRDEGTKEGEDELFPMIKHNAARFKYPLVVQFGMHAGLP
GV
>Zator-2_HM#DNA/Zator 656-3154 [Hydra magnipapillata]
MSANVFQVIHNIKMDKGQLYASLYDAYVKAYSQKRKQDCQKEVNDIWSKVKSEDNLSAKVDSLLREYDALFKKKKGTLMS
FWANQSLRHDDAKTIPRKSSAPDVLAKLPDTVVGGNKCKASSCECSMITSSTSGSENVGKYKTKVQDELKVKIDVIKSDL
VGLHKRKDSGIITNDQEAELIEKRRKVDMLEKSLLKKKKEQARQKKTREKKRETLAKICAENPGVCDALKAKDKTGRPSV
EINQPLFLKAIVDIALHGSAAHERRQSDMYRSIKTLDELTKQLNKDGYQVSRSTVYTRLMPRRSSTLEGKRHISTVPVKL
IRSQNDSHSKHIDGKFCTATLRHLEELSSILGPKEVCFISQDDKARVPIGLTAANKQAPLLMHVEYRINLPDHDWVVAAR
HKLIPSVYAGICIKKDGLGKPDAVTYSGPTYIAIRSGKHSSSSALAHGLDFERLLQLDEFDAITKDGRDKIIKPIVVFTV
DGGPDENPRYQKVIDVAIHHFVKNNLDALFIATNAPGRSAFNRVERRMAPLSRELSGVILPHERYGSHLDSQGRTIDDYL
ERRNFKYAGQTLAEIWSQVIIDQFPTVAEFIDPETSELDAEELIIKDIKWFSEHVRTSQYFTQIVKCQDVKCCFKIRSSY
FNVVPSRFLCPPIPVIQTSNGLQADKRGDSESHKFPSLFVSHSIKIDDIMARSAGSFQVHPYDLFCPSVQTCLLNRICKV
CHLYFASQAILKKHVELHKNCDKGNTVLEKTQTKRIRPIRVAARRQRELMVVIAREKNEDIEWLDEDEVDVSGIVIPDED
LEKTSEMPVLTIDEHFKSPWMDNNKWVDKVKV
>Ambal-2_FCy_gag#LINE/Ambal 126-3155 [Fragilariopsis cylindrus]
MITKPLLIRQGWSHTNGEDMYDNVSIGSTKEVQSGGKLDQKSMKLKENSENGIIGISDNGKIPDTDEQGWTKINASGGRK
PKTTTMERPIIDSIITTIDIETKKVKNGTMEVKIESPVRSNRCNIPDTTVRYDDDKSADTTKQLMNQVPTTEEEEEEDEE
EDEDEDEEEEEEEEEEVKKIETPTRTTRSMITDGIEFELNSRNHSEQRLTPPRIEEKKQEEDKEDKEEEERYKKEKHNNK
KNKNITNTPTSEEKELGKERIVTMANEQAGDNENRRLATDRTTDQMQEDNGDDTGNNNGNEGNNGNNASGISGNSGNNGT
NDDNNNNNSNNNNNRKRGGRAKVSIVEPTDMATYTFTIAWRPENKAGKDGKIIIKNVMREMQHREPTIIFHPTNSATSPV
PRDIRNINNDFPKTPATFDDFFDQNRNRDNTNQQTFMKVSMPHNEKELQNKIHNYLYHNQLYMNSPFINDNTLEHVGFVE
KGHSRLVFRPAMEKKIQNGIKDIMNGDQLTPQQIAQIKNLSSDVRVECHRGTVRGGAYTNQSVCEGIVLKTTKSQAKLVM
ELLAMLPDNLLGEHYRICPKSVNQHLGFELYGQIVADTANFQHKLQPITILNCHPSVFDDMYGNVKVVNSTQVKVKQFIL
GNCGAISIEETNETATKGKYIVIVPANKVDSARKAIGKMFQEFQESSDRPAALECIKAYENYPLVNDTVTISGHAENLAQ
KIRERYKNKPKTPIRTMQSSQYSYHGSVSMEEQNALQAAAAAVPRSIIKKGRHNINLALPLQQWPSPPAVHQAATTTTNQ
AEIGTVMSNLSPDDSAKTMMTNVSKMVESLGTVVTTMAKETANTNETMKQMMIQQATTMNNLMMIMTRNEDRRQGTPISI
SEIQPVIDLQQGSTPASTLTNSQYSLSQEQSPSSNKRPKHGLDDDETTALSTVENGDGTTEDMIEEQMEATTNEQSNDVT
MGDNDEQTTVETTNTANVPGDFSQFNNNNNNNKQATTNTSAKTDMNPPNE
>Ambal-3_FCy_p3#LINE/Ambal 11164-12522 [Fragilariopsis cylindrus]
MAKITKPNALWNTIKPTTAELLKNDEAIKQLTAELATLKRTDVALDEEMRDICQKFWDKTNEVKNLHTNATSHFNSLQGQ
ITESTSTIMTIYEAITDTPSTLKALQDQQKAANTAHKTAEGATISRHEHLKRVREAIDSYRQGVDAAEGLHADAKIKINE
LQETLQASQSATEEISKSIEGHLPSLKNLDTKYTKVKNAQEAATLETSNKDNELTDATETALDVLADEILISDGRRVIKR
VLLNSLGKKFGFKKWTCSDQKYNRQLWPQVEGILCILVDLPLFFSLAELQTLLGYSPHNNNVKLALKKMTEEEMLIVEED
KSQTKNYYLGETARAILDRKIIPDINVARPADLAATIQEHFDAGHLQANKYKKRKAKTATPEHTTDTPFATPSPKKKRKF
TLEEEATTDSEKKGSTSDNALEISSEEDTSEEETSDSDNDKSANEVPQDHAEV
>Ambal-2_FCy_pol#LINE/Ambal 3486-10490 [Fragilariopsis cylindrus]
MPGLQDRDREDSDSEDDEDFHRNSERKSQIRTKVSRKERSSEGINTKSVRNSEELRTKLSRKERNSELRTKLSRIEKSST
INDEVATTVSMETTTTRAIGDSSDYGTEINSEEDLFFEPSDDEGEEEDSVQNNNNYNNENEASTTTTTTTTTTTTTTPTS
TTPKTMKITQENLPFGHICDDVAIGNDTPYVRVYCQNVCGIYDRDGIGLDSAFNEMKQAGADIFTFNETHGDESNAMARR
ATKMSKQRMWRDNNEDCKILHSSSTAPVLSFTKPGGNMVGITGSLVGRIRETITDPYGRWCGYTLIGKDNKEIMVLTAYN
VSQHKNAKVGDDTLYNQQTALYKLKDIRDPDPKKLFIEDLTALVKKARMEDKDIILTGDFNELVGDDPNGMVKVISAGGL
TDAHSHQHGIVDITTYTRGVKRLDYVFVTPRLVDHILRSGYEPFHARIASDHRGYFVDFALAGFLDRQLPSIFSASSRAI
RGTHPKNITKYVEHLHKVFKMRDIYRRVKLQKNWYEKKKLEALDREITAVMLEAEEQCRIHHREPWSEEVNEVMTTANIL
RIHLSSLKNNIDCSNQIQQKQLLLKNQIQLPEDIAEASKALSIAQKKRRKLIRDNRTKTTNIGEEQEAAYVAMNPEMDAK
RAAQIFQRARDTKQMMSELPSKMNCPGGLSAVLVPLPKEGIELEYLAITDGPTIERVILEKNIRHFRQAEFTPLASPEVI
RKIGFGADTETAEHLLDGTGDPTDITDDEWSRFLLTSMKRNSEELKIEITAEKMMEKYRRWKERTSTSPSGRHLGHFHAL
FRPLKAKNKKDREQLDDIRQDIIDLHATMLQTAYDNEHVYKRWEYILTCMLAKESGIPRIHRLRVIHLYECDLNLLFSLF
FRELDQHCEDNFLLNKGVYGCRPNRRAMDPVFVDVTQNEMAMVTRKALVKFNNDATACFDRILVHLLSLCLQSFGCPKKL
TKILGELLRVAKYAIKTGIGISKETYQHSDESPAFGSGQGSAASAQGWTKLVSMLFDIHDKYGHGCKYEDPWRLYSEIIG
MLGFVDDNNITNNGEDWETVNDIIIRTQHDAQLWNDLLRATGGALNLDKCFAQVLAFQFGLNGAPVIAPADPTNIIIIKD
RQNNKEVIIKPISPYTTYRFLGTEQGTSKNQKSQQGKLVKTSATHNRKLACSAMSPRCAWVHYTAVFLSSVGYPLSMCHL
SQHQLHDLQKKYIPTLLNKIGIARTHAHALVFGPRAYGGVGCNDLRIEQGLDAVQNLIRQLRTPGYGKQLATIFLRTFQH
ASGLSKPLLQYPGIRAPHLEGHYYVHIRRFLAKHRASLEIECIPESIDERIGDTYIMDVVCAPEAAQTLDRTKLKHYTDA
EINQIHYCKSYLQVKRISDLCTADGAFILPSIAKGERSIRQCTSKLNEITQERPGDQSWTVWRKFLKTICKPSSNQGSNP
ESTESSLFAPRTKPRPNEPGSEPGPSSRLNLSTEPRTEPTPMENRDALIENEGLQQRKEVIDKVSTGTFILKYWVGVPFR
GIVMNNTGKYYKILYEDGDEEELNHTEVVKYEKKYREEGRMTGEIGQRMRLTKPLGDWLVQANDSERLWPFYYSEETDTL
YRSYRKEWHTNGEYYYDCHMIADNDTYNYVPEGNVERLPNDASPTDVMDTEDGWRISKHHPVRQQEEEHVESKTIMQYLQ
SQEEHVSQYYAEINFFTTPYEVYELIKSPRKYNIATDGGAIPLKGSLGFVVADEDGTILLSCYGQPSGNDPLSFRSEICA
LLAAAKLLQLITEYYDNQIQCEEPARGKIQVYTDSLSMIKKLEAYDEYPTAHLKTVLNSEWDVLSALSRTLKKFRTYPKL
SWVKSHQDDLVFDEKAMPLEAYLNSEADELATIGLKRLQEKPTVPMDPNTCIQFHIEGRTITRNFKNTVREIILLKPLRK
FYCERFKWSDNIFDLIDWDVFRPVYKKHLATKGIAWMHKFCIKKLPTGERVHKRDHFHDKRCASCLDDEDDDHILQCDNR
RSVRKKVVNQINVLRKTVDKNLCDILQEGLMAYFKGDCMSNTMFRIRGGKGMERYKNLIDEQTVIGWDNLLRGKFSKEWR
IQQKAYKTRLRLVDPIEYDRMKRQKKRQQEQHNDANNNNKTTKSKNKTEEFHGFFQSIVPIILEMWTDRCIDRNTPVLGG
RIVAEYESLCKRITHLYTLREMVLPEDEIKIYDETLLSKLADTNQQLKKWINRWRPVIDHSMKRVKELAQDNSIPIWQHF
TANKPAKTKVSRKTTKQSKPKKYSNNPLTNVYTRLKKKRSSSRVLPVIKKIKHKVNHLISTLYNKLGKKRSTSREQTALE
VGKQIIDDRFGDEPK
>ITmD37E_Ele9_tp#DNA/TcMar-Tc1 152-1168  [Aedes aegypti]
MASNEEIVRQQILGTHFENPNASHRWIGKQLGIAHSTVSHVIKTFKDRKTTKRKNGSGKKRGTSNPEKARMVLNQFKRYP
NISIRDVAKKAKVSVCFVQKTMKRSGLHVYKVQKAPNRSEKQNSVAKTRARKLYREWLTKPFCVVMDDETYIKADTKQMP
GQEHYVATSKLAVPESVRKKKLSKFAKKFLVWQAICGCGEMSQPFITSGTVNGQIYKDECLQKRLLPFLRSHDGPTLFWP
DLATCHYARPVLDWYKDNDVVFVPKDVNPPNTPELRPIEKFWAIMKAKLVKTPKLIENELELKKAWLKVSKQVAPIIAQN
LMKGVKAKVRAFGLGEEVQ
>Mariner-4_SBi#DNA/TcMar-Stowaway 445-2918 via genewise with Stow2_OS_tp#DNA/TcMar-Stowaway, 2 introns (1048:1403, 2264:2336) [Sorghum bicolor]
MAIDLNTLPEEEGEKVPDLNKSPAEHEEDHNPLEDVVAVVEVGGADHFGLHPVQNEEQEQIHHQGHNAAHPFHSNDPHEE
QQNLHAGDDYIGFQEQQDTLDDVIHDFGVYTDAVHIIFDEEELSDSDDEDYQQPLQEEATNVLKNLTQRQRQDIYKDLLQ
ISTNGTLQRNSTTLIAAKYNVHVRTVQRVWKRAKDCLAQGIPVDVNSLRAKNCGRKKIQVDLMRVVDIPLNRRGTIRSLA
YALEISKSTLHRLFKEGLLRRHSNALRPYLKEENKHARLRWVFSMLDQSTLPNNPKFRDMKNIIHSDEKWFNGTQKNMTM
YMHPDEEDPHRTVQNKNAIHKVMFYSAVGRPRFDAEGRCYFDGKIGIWPFVREEPAKRRSGNRPRGTPITKTMKVDRQTI
RSYMITKLIPAIQACWPREARHETIWIQQDNAPSHVRADDADFALAVAQTGLDIRLTNQPANSPDMNCLDLGFFASLQSI
TDRTTSRNMDELIQNVCTEYQNYNPVILNRVFLTLQGCMIEVMKDSGGNRYKIPHMNKERLEALHMLPEALSCDSQLVRR
AFELLNT
>Mariner13_CB_tp#DNA/TcMar-Tc1 153-1181  [Caenorhabditis briggsae]
MTAASPHRTLIVDFYKRGLSTGDISKRLGVHRNTVFATIRRFNQLGHLKDRTGRGRPRTVRTPAKVKAVREKVRRNAHRS
MKKMSDDMDISYTSMRRIVRKELKMTSYRATKAAILSQANKEKRLIKAKRLLAGTRKKDHLITIFSDEKLFSVEAEFNSQ
NHRVLATNIQQAAERGKTIHRASHPASIMVFGAVCYDGKCPLVFVDKGVKINQKYYVEEILEKHVLPWAQNHFGQKKYIF
QQDGAPAHTAKMAQQWCKDHFPAFIPKDEWPASSPDLNPLDYSVWGVLQNKVCARPHANIEALKKSLSEEWDKLSVEYLR
ATIDAFPRRLRAVVAAKGGRIE
>Mariner-1_AMel_tp#DNA/TcMar-Tc1 114-1197 via tfasty with CRMAR_tp, 1 frameshift. Replaces AMARI_tp [Apis mellifera]
MERYTIQQRVFIIEQYFKNNESLAAAVRKFYTKYGKNSVLTSSTVKRLIEKFVETGSVGDAKHTGRPKTSRSNVNIEAVR
ESVGENPGTSIRRRGQELQISRSSLQRILTKDLCLHAYKIQLTQQLKPNDHEQRREFVEWIINHQKVDAGFSSKIILSDE
AHFHLDGFVNRQNCRVWGSENPRVISEKQMHPQRVTVWCGFWAGGIIGPYFFENEAGQAATVNGARYRDMITQFFLPKLD
DIDVANMWFQQDDATCHTANETIQLLHETFPGRVLSRFGDQNWPPRSCDLTPLDFFLWGYLKSKVYVNNPTTTRALQEEI
KRCINEIQPQLCRKVMKNFDERVRMCQQSRGGHLPDVLFHK
>Mariner15_CB_tp#DNA/TcMar-Tc1 293-1326 wised with Mariner14_CB  [Caenorhabditis briggsae]
MPRATHLSDSERAQIDAFKTAGWSNRRIAARLGRSFNCINTFVNNPDHYETNKKSGAPKKLTDRDTRSIIRLASNSMKSC
NDIKNELKLDVSKSTVWRTLDSNQNIVRAKLMSAPMLTDAHKANRLQFARNNMATDWDKVWNAFEIITYAXFLLQIIFSD
EKKFNLDGPDGFNSYWHDLKKDPLHFSKRNFGGGRLMVWGAFSSAGTVDLAFVSFRMNSTDYQDVMTAKLIPYLRRFHRR
QLTYQQDNASIHASRSTLDWFKSKKIKVMDWPACSPDLNPMENVWAELVRVVYGQGKQYQTVSELQTAIVDAWKNLKKPY
LQKLLNSMPNRLFSIISTGGKPTKY
>Mariner-3_SBi#DNA/TcMar-Stowaway 896-2324 via genewise with Stow2_OS_tp#DNA/TcMar-Stowaway, 1 intron (2024:2117) [Sorghum bicolor]
MHASNTNXFCLTEHVQQPRRNKEMTDHLRKQVFQTLLARSKNGKLGKKDTTIVAEQFGLKTRAVQKLWKRGKTQLxxPIP
VDVSSLKKGRVGRKQIPVDLDALRNIPxKQRMTIEDVCKALNLSKWQIQRFLKKGYLRRHSSSIKPYLTETNxRGRLQWC
VDMVNRELLHDPKFKELYDFIFIDEKWFYLHQKNERYYLLPEEDVPHRTCRNKNYIPRLMFxCACARPRFRDGVCTFDGK
IGCFPLVHFEPAxRSNERTGRVRGDVVMKxITSITGDVIRDFMINxVLPAIREKWPREDLGRPIFIQQDNAPSHLKLDDP
EFCAAAKLGGFDIRLICQPPNSPDFNILDLGFFRAIQAIQYKEAKTIEALVPAVKEAFMEYSPHLANRMFLTLQGVFIEA
MKVNGCNNYQIPHMKKETLESEDRLPSCLPCDPSLLHEAEATLAA
>Sagan-1_ESi#DNA/TcMar-Sagan 385-3698 via genscan, 2 introns (1168:1457, 2338:2580)  [Ectocarpus siliculosus]
MDPDTDALLHVKGTLPAEYELGELEVHRGAPRKYRIGLKARHSSQAGQPLLQWHSRTFTTKSARGRDRAAESQACRTITA
QTWLDLAAKTIQHEAIQQPPSRVTTGVRLAAPAPGSLQEPGVGGAERLREGCGGAREGAGRKKGSLGKRARRERATMLRE
ELVKAFPGALELQAGTLAELLRAWKATEPEMADEAMKRYMNKGTYNTSQARKKIKRAREADLRARAVEAAADEFRADSIE
YFDTVLRDAQKAISAAAALEDDEASAPGAALSNYQLAHVVQQAMTLLHLYLLQQDGVNRTDALAAAARVGRRSIGTVNDW
EHGFLARGKIKPPEKGRFQRTFLLELDEGIQKLVKQWMLDNCGILSGEANKTAEDFRKWINKTIMPKLEALETEDFDPFD
GLRVRREEPTEKDGEPPVPGKRFISLSTATAWLKKLGCEYHGAKKGLYFDGHDDPETLKYRNNDFLPQLFDARDRMDVWI
PVPNEEAEAWGIDVNEVPEADRMQEGDGVWVSVDDLQSALADLSPDLQAKVQSKKTYPDGKKALLLYQDESIFRANDDQK
WAWFRKDQRVVIKKSPGQGIMVSGTIIHNVGFFSASPSQVAEAESNRKKRCRESAAAARRGENIKPEKYRPIDMLHVDDD
GNYWSFHLFEYGKNKEGYWTGLKMLDHTNDVLDVVAVLYPNHKPVCLFDWSSCHDCLEVGAPRVSGMNVGFGGVRKGEEL
AAMDAVTILEDTPLLKAGTTQHLVFQRGDDPPFYAEHLRPSEYVGKLKGMRQILFERGLLKKGMSKLGGTGEKKDLSMSM
EHVLGEQRDFKEVDSSLVLLMRRHGGVCVMLPKYHCECNPIELVWGRAKDWTRQNCTYSMECLRKNVPLSFRPEKDRQAI
AVVQAYCKKAYTHALVYLKARALGPTGKEIYKKFKSHRRPTPNTWRK
>Pogo_tp#DNA/TcMar-Pogo There's a frameshift in the consensus; protein taken from:  gi|2133672|pir||S20478 hypothetical protein - fruit fly [Drosophila fruit fly genus]
MGKTKRVVGLTLKEKLQIIELVTNKVDKKEICAKFKCDRSTVNRILQKTNEIHEAVAASGLKRKRQRKGAHDLVEEALYI
WFGQQESKNVILDRHVILAKAKEFCQKFNDAFEPDASWLWRWRKRHNIKYGKIHGETATNDSVSANEYKNDILPGLLKGY
NPEDIFNADETALFYKAMPNATFFTCGKQLNGQKSQRVRLTLLFICNATGTYKKTFVIGRSKSPRCFKNANVPIPYYANK
KAWMTKDLWRKIMTGFDEEMKKQNRKILLFIDNATSHTTVKDFENIKLCFMPPNATALLQPLDQGIIHSFKLEYRRILVK
QQLIAVNCGKSTVEFLKSLSLLDALYFVNQGWKNVKMLTIQNCFKKAGFKFSFENEDTIAEKDKQCVEVDIVSNINWNEY
ANVDADEACHGQLDDDEIVRSLVQDAKTSDNEESHSDEDVDDTE
>Sagan-1_LB#DNA/TcMar-Sagan 1205-3218 via genewise with Sagan-2_MLP, 2 introns (2185:2244, 2912:2963) [Laccaria bicolor]
MFDDETPADVFCDLVQIREESMSPPRLLFDDQISLLGKRKNGCESNPENSADPHHAAQKNTDDLELADEEWEAELDECFA
SNPSEIRDWHALRDQIKNDLNKKFKSLPLSQINQLMILRNFATLRLKGLGRIEASKDIAKQWHQKLEGSSDHFARRIRAL
ARHYQIFEQLPRERRGGQKNSRSILKNEAVRRASRAWLIQQQKGKVTPVKFQKGLNESILPSLGIYPNKPLCERTARRWL
VKLGWHRTRIKKGVYVDGHERADVVSYRQNIFLPKMAEFESRMARYERIGDDLQRISPLLQLGEKEIIPEFHDESSFHAF
EHTASVWLHSTEQIIPKKDRGRLIHISEYIEAENGRLVVNGPNGEVLKEARQIIYPGSNGDPWWDSKQLIDQVKNKAIPV
FEEAHPGCQALFIYDQSSAHAALAPDALKAFEMNKSNGGAQRRQKDTIIPDSNPFPEYRGRIQKMTTETGQQKGLQQTLE
ERGFDVRHLRAKCAPVCPFENENCCMARLLSKQEDFANQISVLETVIREAGHECIFLPKFHCELNPIEMYWGWAKYRYRQ
VDKNTFQQAKDAASEALNACPPEVIRRFINRSWRWMSAYRIGLTGEAAQWAVRKQKGHRSVSRTAMMHLDSVLN
>Sagan-2_PGr#DNA/TcMar-Sagan 1368-2919 Fragment, via genewise with Sagan-1_MLP, 1 intron (2723:2785), 1 frameshift. The gene goes from 185-3022+ with two introns, but the quality of the remaining seqeunce is too low to translate. Real protein may be really close to Sagan-1_MLP. [Puccinia graminis]
TFSMGFTQIIGEVSTASNFTLHNQPRTLTSPMEFTGHTDLVSNPCFESTFPAFEIEKTISRKTATAWMYKLGFSPQEYKK
SIYFDGHERSDVVEARKKYIKEYRELRRRSRIYEGENLELAAPVDPEALGDKRETVFIYHDESTVHAKERPGVAWLSPGT
SEIRSKNSGRLIHISDFILETTGRLTSLETDNTTSTDAATIIYPGSTGDKWWDMQQLCDQVTTEGIPIFDQTYPDSQAVF
VFDCSSAHGAYAPSALRVQNMNLNSGGKQARLRDSIIPSDDPHIPPHLRGQQKFVYGNDHPDPERAGKPKGVRVILEERG
LWQHYTQKARESGSLLSSSMYSLHNLRLRKDATERSARLIRQAEANGYFLHRSNASKNSASRGTPSTDTPEPTARMQSTA
PCCWSKVIQLQSDFQNERPLLQTIIEDAGHVCLFLPKFHCELNPIELFWSxIKQAYRXETHTCKTFSEYKXLFERIRQSC
PLITIXKYFRRIDRQISAY
>Sagan-1_MLP#DNA/TcMar-Sagan 197-3164 via genewise with Sagan-2_MLP, 5 introns (616:637, 819:859, 1333:1636, 2900:2959, 3100:3164), 2 frameshifts Sagan-4_MLP very similar [Melampsora larici-populina]
MHTHRHGEEEQSFKSSSKTMEEGSHGQTPEQTVVISDSEDQPITVDPDVQLTSTKAPDPENLAPQPPIMIHLDDSDSEAE
DPQTPQPPQSVILQPSELYWMPIDPDYLTEEDDMDPLDIPLYAQADIADSSDDEAVIMTFFYSPFLINHQPLGKRKTKDG
RTLKGYKKPCVQTNSKSLYHKRYQKKQKTIQNQSRKGSRKLQLLLHPPPSLHLDTFETSDNDNPNDGNESSENVNMKLNE
NQTENETENETENETENENEEPENDNRFNVVVSNSWIEECVERYRSSKTKLSLPQKIQKAAQDRYNSLDADIMIIEESPV
KTPKKIHPSNTQLPSLTTFESTIHDDLSSLSTVKKIQPHDHLIYQLTPLSLLHHVNTVALPEHGINKTICLNTANRWLHx
LGFRAREYSKGLYFDGHERxDVVAYRHKYLEMIADLQKRSRVYHGEDLELSIAPDPLLLQDQKETIFLYHDESTVHXNER
PKRAWVKDNVQELRKKSDGRLIHXFDWITPATRTGRLEITSEDEHGRLPLPSFTDAAVVTYPGSKGDPWWDCMQLIEQVQ
TRAIPIFEYLFPNAQGVFIFDCSSAHESYGPSALRVSNMNLSPGGKKSPLRDTEIPTDDPRIPVERQGLPQSMVYPADHP
DPNLAGKSKGVRCVLAERGLWDLYEAKAKEAGNKTVLRCATCKLSNTKRDLAARESRLQREKEAQEAYENGETPATSSID
EPDDPYCCASKILSLQSDFANEKPLLQMVIEEAxHICLFLPKFHCELNPIELYWSFIKHHYRANSFKCKTFKDCQALFEQ
IRKRCPVSTIRKYFRKVDRHMNTYRWTTVSLGCSRKLGQGQAISLTPMYYHVRLPES
>Mariner-1_DW_tp#DNA/TcMar-Tc1 129-1385  [Drosophila willistoni]
MQIRQRRSGNNRKGRCKTKTTCIDSLLTIPIFRFFINNCILIYSYFGELFFAFDLFIFVVNFEEVKSFVICTGYLIVAKL
IENSRMKKISKPVEDSIVCLSERGSSSREIAKSLSISQATVIRVLKRREINNQNTSNGRPRLITDGDARLMISQIKKDGH
MTPKDAAKAIGKPVSESTARRALRNIGYTXIVKKKKPALSEKNVKARLQFAKMHRNWTIEDWKKVIWSDESKFNRYQSDG
KEYCWIRPGETIQRRHVRETVKHGGGHVMAWGCFTWWSSAKLVKINGIMRKEDYLNILQTNLGNFIDRCAYGTTDLTFQQ
DNDPKHTARIVQDWLSNQEFKLMKWPAQSPDLNPIENLWSIVKRRLGQYKTAPTNLESLWQRVEEEWTKIPQEIFHNLVE
SMPSRISAVIKHKGLWTKY
>Mariner-17_DAn_tp#DNA/TcMar-Tc1 346-1360 via tfasty with Tc1-2_DM_tp, 1 frameshift. [Drosophila ananassae]
MGKTAELSLVTRSSMVAKFNVGIAVKDIANEYNVSRQTVHYQIKKFKKHNDMRNLRRSGAKRKTDLSEDRVLLRELKKNV
LLKPQSAADQFNLSAKTPISERTVRRRLKEYDFKTYKVKEVPYITKANKLKRLSFAKEYVNKPKEFWRSVLWTDESSFEN
NSKKIVVRLPRAQRQKMRPVCQKVSHGGGSVMFWGCVAYNGLGDFVPVTGSMNQGQYLRVLNDNAFTSGDRLIGQSFILQ
QDNAPCHKAKMITKFLKDVGVTTLDWPPQSPDLNIIENVWSLIKRKRTVSLNKTREETISEVTSLWEEISPEIIQNLIDS
VPERLQKVIETKGNYIFY
>Mariner-13_DF_tp#DNA/TcMar-Tc1 303-1327 via tfasty with Mariner-1_DK, 1 frameshift. [Drosophila ficusphila]
MEQKGKEISVEERKIILKGFLDGKSYREIGALVGRTHSSIQRVINNYNSTGSILPKARSGRPPLLTIREQRNIVKSIQLN
PRTTAHQAKLQVEDSFSKTVSEDTVRRVIKKAGYHSRVARKKPHISEVNRQKRLTFANDYISKNQDFWNKVIFSDESKFC
IFGIKGKVLVWRKSGEAFNKENLVGTVKHGGSGIMVWGCMAASGVGKLVFIESIMDQKIYIDILKNNLKESAEKLGLESE
YWFQQDNDPKHTAQNTKLWLLYNVKNQLRTPPQSPDLNPIEHLWDLLERKIRKHTITSKKMLKDVILEEWGKITADETKN
LVDSMPRRLTEVLQRRGYPTSY
>PARISa_DAn_tp#DNA/TcMar-Tc1 395-1438  [Drosophila ananassae]
MPGKRIDENLIQLVYFNYYKGKTAKELSTLFDIKLRTVYNIINRAEKENRLHLNNSAGRPPKLTRRDDSKILKKINDNPQ
TSLRQLALDLKNDSNKIVSHETVRKVLNKHKYSSHVARKKPLLSALNIDRRLKFSIANANRPAEYWDDVIFCDETKIMMY
YHDGPSKVWRKPNTAFNQKNVIPTVKFGKLSVMVWGCISSKGVGELRIFNDIMTKEFYLDILKKELVKSAKDFGFVDPQN
PDKLNYKLYQDNDPKHKSLLCKTWLLYNCSKVIDTPAQSPDLNPIENLWALLKKKVAKRGPTNKKALISAIQEEWKSIPN
NYDLKDLIHSMPRRLNAALDAKGQHTKY
>Tc1-1_AG_tp#DNA/TcMar-Tc1 272-1270 [Anopheles genus]
MGRGKHCTPEERKHIQGLYRENVPIKTICKAFGRSRTFVDNAIRSEATGKSTGRPRKTTADVDAQIVEMIRADPFKTCTR
IKQELGLQVSAKTVSRRLHAAGFCARRPRKVRKLXPHHVEARIRFAEEHLAASIFWWSKIIFSDESRINLDGSDGIKYVW
RFPNQAYHPKNTIKTLSHGGGHVMVWGCFSWHGTGPLFRINGTLNSEGYRKILSRKMLPYARQQFGDEEHYIFQHDNDSK
HTSRTVKCYLANQDVQVLPWPALSPDLNPIENLWSTLKRQLKNQPARSADDLWTRCKVMWERIXRSECRNLIGDMAKRCQ
EVIANNGHQIDR
>Tc1-1_ACar#DNA/TcMar-Tc1 365-1384  [Anolis carolinensis]
MVKTKELSKDTRNKIVALHQTGKTESAIGKQLGVKKSTVGAIIRKWKRYKTTENLPRSGAPRKISPRGVKMITRTVSKNP
RTTRGNLVNDLQRAGTNVTKATISNTLRRQGLRSCSARRVPLLKPVHVRGRLKFAREHLDDPEEYWENVIWSDETKVELF
GRNTTCRVWRRKNAELHPKNTIPTVKHGGGNIMLWGCFSAKGPGRLIRIHERMNGAMYHEILSANLLPSARALKMKRGWV
FQHDNDPKHTARATKEWLRKKHFKVLEWPSQSPDLNPIENLWRELKVHVAQRQPQNITALEEICMEEWANIPATVCANLV
RTYRKCLTSVIANKGYITKY
>Mariner-12_DF_tp#DNA/TcMar-Tc1 367-1389  [Drosophila ficusphila]
MPRKELTLEERRIILNLHVKGQKSYSEISKIVSRPRSTIQHVIGRFKNEGRIENNSRNGRPPKLTVRDKRLIKHIIDKDP
FQSAVKISSAIATTLKKDVHPETIRRTIKEFGFLSCTPRKKPHVSKKNRLKRLEFAKAYRNHSEEFWQQVIFSDESKYNI
FRSDGRYKVWRKPGDAYRPKNTIKTVKHNGGGLMVWGCMGFAGVGNLEIIDGIMDHKKYIEILKRNLKQSADHLGIGSSF
HFYQDNDPKHTAINTRLWLIYNVPHLLKPPPQSPDLNPIEHLWNKLEEHLRGRTITSRSDLKVALLEEWAKIDHAYIKTL
VSSMPRRLQEVIKMKGYPTKY
>Mariner-5_DEl_tp#DNA/TcMar-Tc1 43-951 Fragment, 1 frameshift [Drosophila elegans]
MDKTTRXTCSSSSVGRNIAAVAESVNDNPSTSTRHRAQELDISRTSLQRILTKDLRLRPYKIQLVQQLKPHDHPMRLRFA
EWAQERLVEDDHFYRKIVFSDEAHFHLGGYVNKQNCRIWGSENPHVVLEKPMHPQRVTVWCGMWSGGIIGPFFFENEEGA
AVTVNGVRYRGMLEDFFFPRMEEEDIDDIWFQQDGATCHTANVTIDFLRGTFENRIISRNGDVNWPPRSCDLTPLDYFLW
GAVKDKCYANHPETIDDLKHEIEVAIRAIEGHTIENVFKNWVDRMGYCKASRGSHMNEVVFHT
>Mariner-4_DF_tp#DNA/TcMar-Tc1 386-1405  [Drosophila ficusphila]
MPGKRVSFDVTQLVYYNHTIGKSTADIANMFKLNIRTVQNIISRAKNENRLENKPVNGRPGKLSNRAIRIIMKKVDQNPM
ISTRKLAVEVREECGVDVSHETIRRTIRSHNFTSRVARKKPLLSKQNVEKRLSFAQTLLDEPPSYWNDVIFCDESKIMLH
YNEGPNRVWRKPLCALQNKNIIPTVKFGKLSVMVWGCISSKGVGDLVFIENTMDAKQYLEILKTNLVNSANTFGFGRSFK
FYQDNDPKHKAHSVRMWTLYNCGKVIETPAQSPDINPIENVWAYLKKKVAKRHPTSRPMLKEFILEEWNQIPIDYIEKLI
NSMKLRLEAVVKAKGHHTKY
>Mariner-8_BM#DNA/TcMar-Tc1 346-1377  [Bombyx mori]
METTPTEAAQIVALLQEGLSQRVVARRLHISQSCVSKACKRFRETGSFIPRPRSGRRRCTSERDDRFIVSTSLRNRHLPG
VDVQQELRDVRGVAASEWTVRRRLKQANLTPKRPVTGPKLTVAHRQARLQFARTHLDWEVEQWRQVLFSDESRMCLHGSD
RRGRVYRRPGERFAQCCFAETVAYGGGSCMMWAGISFDGKTELVFVPGGGRGGGLTSDRYISDILLEHVVPYAGYTGDDF
LLMHDNARCHTARVTTEYLEEVGIATLDWPALSPDLNPIEHVWDEPKRKVRSRTPAPSCLNELKSALIEEWEGIPQESIQ
KLIRSMKNRLRAVIRARGGNTKY
>Mariner-9_DK_tp#DNA/TcMar-Tc1 397-1466 via genewise with Minos_tp, 1 intron (751:803) [Drosophila kikkawai]
MARGKPICKEIRILVLNNYKNGKSFGEIAKQFNLAKSSVQGIIKKFKENGNIENNIAKRGRKSAITARDKRALAAIVKAD
RRQNCRNIASEWSDKIGKGVKRECTRLKLREIGYKFYKAKEKPLLTLRQKKKRLQWSRERMSWTQRQWNTIIFSDEAKFD
VSVGDARRRVIRTKAYHKDCLKRTVKYPASIMVWGCMSAKGVGQLHFIDGMVNAEKYVNILEESFLPSIPKLADCGEYTF
QQDGASSHTAKRTKSWLQNMNIEVLDWPSNSPDLSPIENIWGIMKRKLKNEPQRTLSELKLKIQEVWDSISREQCQNLLK
SMPNRCKCVVKVKGDVTQY
>Mariner-9_DEl_tp#DNA/TcMar-Tc1 346-1364 via tfasty with Tc1-2_DM_tp, 1 frameshift and 1 stopcodon. [Drosophila elegans]
MGKTAELSLVTRSSIVAKFNAGIAVKDIANEFCVSRQTVHYQIKKFKKHNDMRNLRRSGAKRKTDLSEDRVLVREFKKNI
FxTPQSAADQFNLTAKTPISERTVRRRLKECDFKTYKAKDVPYITEKNKLKRLSFAKEHLHKPKEFWRSVLWTDESSFEY
NSSKNKFFVRLPMVQRQKRRPVCQKVSHGGGSVMFWGCVAYNGLGDLVPVTGSMNQGQYLRVLNDNAFSSGDRLIGHTFI
LQQDNAPCHKAKMITTFLKDVGVTTLDWPPQSPDLNIIENVWSLIKRKRTVSLNKTREETISEVTSLWEEISLEIIQNLV
DSVPRRLQKVVETKGNYIFY
>CR1-38_BF_pol#LINE/CR1 2-973 fragment [Branchiostoma floridae]
VVDGERSTSAKVKSGVPQGTVLGPLLFLLYINDIDKNISSQLRLFADDCLIYHPIQTEQDQLDLQKDLDTLTEWSNTWQL
KFNVKKCCIIHVHKSKRSPQFMYTMSAEPLEVSAHHPYLGIILSQDLKWSTHINSVTAKANSTLGFLRRNIRGATKEVRA
KAYTSLVRPKLEYASTIWDPQKRQYANSNVLIDKIESVQKRAARFVFNDYRNTTSVSYLQNKLGWPTLQERRSQARLVLF
YKAFHGLVSIPLHHYISRNTNPTRGHPLRFNTLSCRTEIYRNSYLPTTVSAWNKLPSHIVSAPTLASFKLGLVQQMGHPN
SQM
>CR1-34_BF_pol#LINE/CR1 529-3369  [Branchiostoma floridae]
MYTNIDQLPNKRDDLTLAISTKKPDVIILTEAIPKAQRLPIGAARITIPGFTAHMNFDPDQGNLGTLGKRGIVIYTADYI
DATEVSYSDIEFQEHLWVQVRLRGRDKLLIGGIYRSQSSDPKSSTEHLAQLLQVVTGTSPTHLVIAGDFNYPEIDWEQAT
SCANDAHPSHLFLRCVHKNLLYQHVFKPTRYRPGELPNILDLVLTNEDGMVENIEYLPGIGHSDHIRLQFETRLYSERKD
NPTPRLSLYRGDYVNMAADLSGIDWDTRLMDKSFDEAYSDFISILQSSITSHIPLTSKKSCKKNLYSTPAVKSLSKKKRS
SWDRYTVSGDEVDYARYAALRNDLRKLTRKLRYEFESNLVRDVKRNPKSFWKYVNSRLKTKSVIGDLKMADGTMTTSSKE
KADTLNQFFCSVFTREETGRMPRMEAKYYGPNLEDITITPEGILKKLKKLKKDKSPGPDGLHPKILAEVAEAVARPLAIL
FRKSLDEGRLAEEWRLAHITAIHKKGPKNEPGNFRPISLTSVIVKLFESVIRDALADHMMVNELFCDQQHGFVPGRSCIT
QLITTMDLWTQAVEASEPLDAIYLDFQKAFDRVPHARLMHKLSQYGISGKLHGWIQAFLTDRRQRVCVDGELSEWAMVSS
GIPQGSVLGPILFVIFINDMPSTIESACRLFADDTKVFRRVSSPEEVATLQADIDNLADWSKDWQLSFNITKCKRMHIGY
GNPCQQYEMQGLTLEETTEERDLGVIVDQKLKFHAHCTTTAGKAFRTLGLIRKSFQRLDETTVPILYKTMVRPILEYGNV
IWGPHFKGDQQLLDRVQHKATRLIPGFGELTYEDRLRRLRLPTLEHRRKRGDMIQLFKIVKGFDRIDPNRLFKFNVDGRT
RGHSFKIVKPLAKKSARSNFFSVRVINAWNDLPADVVAADSVNIFKSKLDSYSNYWGGIEYTPSPT
>CR1-39_HM_pol#LINE/CR1 1041-4281 via tfasty with CR1-23_HM_pol, 1 frameshift.  [Hydra magnipapillata]
QFITTRFLYTPINPTIKTNTIKNNSRIHLSCCSSKEVPGNITLTQIIPSSIPNQQKLFSNELNSDEKIMPDRKLLKTKAL
KPKRPKPNRTLRSQYSQQHNKALLRDPTTIDFSDILYYWANNPCSLNKDKHNELVARLANIRDPSLLPHVIWFTETWFTN
DSDTSIAGYQLHRKDRIGRGGGVAIYIKDSVVAEETNVVQLNSPEIEQIWRMIKIGEDVILIGCIYRPHDFNDDYFVSVL
ATILAAKNVLQKLGCSSMLLYGDFNLKETSYKSIEEGSAVATIAYVAHKHPTDLKFQECLNECHLTQLVTFPTYRQYRDA
PFSSTLDLIISDKPDRSIEITRADHLGDTPGGQAHCMIHGLFALTGHNTTTTPMKKRFIWSKADYNSISTCISSIDWITT
FNGSSVHENYKILVKNYNDAVNKFIPTTTSPFYKNQPLWITPEVLKTIKKKRKAWGKYIAAGRETHEALRVKHKLACKIV
KKTINKAVTDHEEKLVKDSKSHPKNVHAYVRSKQEVKDPLHSIETDNGIITTDKNIICSTLNNYFQSVFETEPDGSMPTF
PDRTQATCKINENWFTIEDIQSHLNNLEETKSIGVDGIHPRVLRNCAAAFAIPFNSIFRQSLLSGSVPEYWKKSNITPIF
KKGSKLKAYNYRPVSLTSIPCKVMEKIIHKHIMAHCVENNLISKHQHGFIRKKGCLTNLLEARDILTEAMHQGYSADIIY
TDFAKAFDKVPHKRLLHKLKAYGIHKKLLLWIKMWLKDRKQRVVLGEHVSEWKNVTSGVPQGSVLGPLLFILFINDLPDS
IVHKIMLYADDSKIIGIIKSASDNTTLQADIDNAVTWSNTWLMHFNIDKCKVMHAGRPNKRLSHDYSMETADGMRHTIAT
TTIECDLGVLISNDLKVRAQVEKAASAANRMLGKLKNAFRSRNLNLWRTLYISYVRPHLEFAIQAWSPYLETDIKLLEDV
QDRVTKTISSISHFDKIKRLQVLKLTTLKERRLRGDIIEQFKIFNNYDEVQFMVPQHQLIGREVYNLRGHDKQLDRQFVR
GCEERSNFFTNRVAVHWNSLTQHAVNAPSLNAFKDRISMR
>CR1-75_HM_pol#LINE/CR1 711-3671   [Hydra magnipapillata]
NRTPNPNTYSPLSFISSYSLSDLKCLYLNPTSLDNKWDEFQARIASLDYPHIVAVTETWFSATSSTNLENYTVYLRNRTI
RGGGVAIYVRKDIHSFECEFSDELISEQIWCQILIGNDILLIGCIYRQPFTKYESNLQINKSIKRARALIDDGKFTSVLI
VGDFNYSDIRWSDLGGKCKKGKQSSKIFLKTIDDCFLSQFVTKPTFINNTLDLVLSEDPDRIHNITIGPPLGCTQKNYFH
NSLLWDFKLKTSTKSIRHHKVNYIYDKGDYNAISEGLKAINWPNLFTNKSADESFELFKNIYISLVEHHIPKYNMSFNFK
KRDPKWFNSTIKAATNEKFRLFMKLRCSSSKFKDSIRVLYNKQNRLVKKLVADAVLKYESEVISACKSCPKKFYSYINSQ
KACKSEIRSLFDHDGVQLVDNMSIANCLNNHFFKAFSLPETHSKAPDFPRRTEIVCSPVSSSLFNCCNIEKLLSALDSSK
GTGNDGIHPRVLKMCSKEFSVPLSLLFIKSFDSGQVPSGWKLANITPIFKKGQRTDPGNYRPISLTSAIGKVMEKIMRDV
MTEHLVKHNLLSCHQHGFVKSRSCVTNLLEVMDIITKALSDNCAALLILLDFAKAFDRVSHLLLYHKLAGYGFGNNILAW
LKDFLENRKQRVVLGNFSSEWKDVHSGVPQGSVIGPLLFLIFINDMPELVKNNCKLFADDSQLVAKIKTVTDLALVQNDI
DMICNWSRLWCMELSINKCKVLKFRGGSTDINIPLTMLDKNGSQIPIEDVSVERTLGVLIHNKLKWSDQISDATLKANSI
LGILKRTFKKWNPTMFVKLYTAYVRPILEYCAPIWCPFLLKDIKKLESVQRRATKLVPQFRSLNYKKRLAYLGLSSLAER
RTRGDVIQFFKIYKKLNIVNWQQQINRASALLCDGPAGHLRGAKHKIDRELSKNSQRHNFFRNRVVSSWNALPASVVAAN
SVDRFKNNYDKWNRSISRRSTIVGSR
>CR1-49_HM_pol#LINE/CR1 1448-4424 via tfasty with CR1-62_HM_pol, 1 frameshift.  [Hydra magnipapillata]
QSTVSNLKPYNDNLNINEISLERKSFSTISLLQQSAFHKIPCCYTNATSLNNKMPEFLASIETYNPKIIFVTETWWHESS
ITNIENYMLFRKDRVSSRGGGVAIYVDTSLKPNEVSEIVLLDSPEQIWCEISYGSEHILLGCIYRPHTLDPLENIEASII
KANELLSKIYSGLLICGDFNLPGINWDLSSIPTVSNTDILSSNFIDILAESFLIQFVTKPTFQLDEITSNNTLDLIIAEN
ENRVLDIIHHAPLTSLKKSHHVLQWDYVVKSAAVVGKHIEKRVYHKSNFVKISEYFNNINWQMEFNGHNTDDCYNIFLNH
YEAACKNYVPVTNLKWIRRRSEWMNDDIKNKIKAKNKLWFRCRANGYKNLKLVNEYKACNIQLKKLIYKARCEFELDLAI
KSKHNPKILFKYVNSKQNVRTTITALKGINGDTITNPIEIANRLNNHFQSVFNKNEDDELPYFIKRTEAICKYSQITLDL
VKNKLSNLSVDKTVGLDGVSAYVLKNCSDSFSIPLSAIFQKSLDSGCCPKVWKKANVTPLFKNGSRLDPGNYRPISLTSV
VCKVMEKILRDTMVNHLVEHSLISKNQHGFVNKKACVTNLLESIDMMSKALSDKISMDVAFIDFSKAFDMVPHKRLIYKL
EAYGFTGNLLNWIKSFLHQRFQRIVMGDYVSSWLEVFSGVPQGSVLGPILFIIFVNDISDIVNHPCKMYADDTKLLARLD
HPLASQMLQTDIYNIADWCNTWKMKLNLDKCKIMHIGKKNNFYVYSMPANNNNSVELASTLVERDLGIMITPDLKWHNNS
TFATNKANRVLGMLYRTFSHMTPQLLKILYTTFVRPHLEFAVAASNPSSRIDIDKIEKVQRRATRLVPSYRHMSYKDRLN
ILNLTSLETRRIRGDLIQAYKIINNIDIVSWSEPHVLRVGQSNKIKTRGHHLKMTREYVKNCEQRHQFFTNRIVNHWNAL
PSEVVCASSVNSFKAKLDAEISNNPHKYRDYN
>CR1-31_HM_pol#LINE/CR1 1008-4037   [Hydra magnipapillata]
MEERGTHTSNGNQQLRPFNRSQHLTSSTFLNKASSSIKLSNLLCFYTNATSLNPIKLIELSLLAENNSFDIIFITETWFN
DQSTPSLPNYNLYRSDRLNQIGGGVAIYTNNKIISNQLQESLLHKNFICYYSEQLWVELKLLNETLLLGCIYRPPSSGIX
AFSEISSAIFHAETSVLTKKYNGMIIAGDFNFPEITWTSNSVFSSSKIGLSSSFVSLLQDCHLHQIVTVPTFKPANRPMT
NTLDLIICDSPYRANEINIGPPLGLSDQYHCSITWQYKLASTGKLSHFNSSKFIYNLGNYKKINKEFNKVDWSSIFKELN
VEQCYQIWLNKYNECCLQFIPRMPNKPSPNKQPWMTKELLSLIRLKKSLWARNVSSKWKIASLVKEYRETRKFVKKLSCS
SLKSFEFALANDKRNPKRLFSYINSKRSVINQISSMRITSSSEIISSDKIKIANSLNNQFQAVFSKEPSNGNLPHFDRRT
NTILNNITFDTQATLMELSSLDISKSLGVDNVSPXVLRXCSTSMSTPLTLIFQKSFDNGEIPXSWSKANVTPLFKKGSRI
DPSNYRPISLTSIPCKIMEKLVKKAIMXHLKXNTLLSNSQHGFXEKKACITNLLETMDFLTGNMARKLPVDVIFLDFAKA
FDKVPHQRXLYKLKMYGIXGNLLNWIKAFLXNRSQRVILGDTQSNWLPVTSGVPQGSVLGPILFVIFINDLPDVISKENI
CKIYADDTKILSIVNSLAAQLQLQSDIDQIVHWTKSWLMELNIKKCKVMHFGQKNXIPFEYSMEETGSSSIXTRTKLETT
TSERDLGIQITNDLKVETQSIIASCKANQMLGILKHTFQXRDASLWKQLYSTYVRPLLEFAIPAWNPHLVKDEQIIELIQ
HRATKIPXKLKXLDYKSRCLKLGLTSLIDRRKQGDLIQKYKIDKNIDIINWHFPXITIPPRANHRERXHREKYSNXLARF
XFFNNRIVNAWNILPDKVINSPTVNSFKASLDRLQCYYSSQFSLMXXAI
>CR1-19_NV_pol#LINE/CR1 5-3352 [Nematostella vectensis]
MADRRTGACSSAFAALFILLAISSKIYAHTITPKCDLHGKRPVEGLTNFTWNMFKPLGQFTIRRKPSKGTMITSAFRKHR
TFVSIIPGLLLLCGDIISQPGPAANAGLRHSSIKCLGINARSIKSTHKVGSAIVCNSERVQDLAYSENADIVFINETWLN
SSISDEEVFHSGYTIYRRDRNDREGGGVLIAAKSDSFKAIKEWKPDMTLFQDLEVVSAELTTSCNRKVLFSSFYWPDPDS
DPYVWLEKFNNYLDYACDSFDTMLISGDFNMSKISWASEEQSLGARERSFTEILNDHYLSQMNHFPTRGDKILDLVITNA
SDQVCVNEVLSPNEAGVFSDHGVVCFEFSAFVKAPSKFHRSVYNYTKADFDGLRASLSALELTMSSNENSDIDTDWQNWK
DLFLAAVADHVPSKKLRGRNPVPWMNGTILDLIKKKETTRRRLKKTPAKASLREKFKALRAEVKQALRESRENFFQSLER
DYKNNTKRFWSVLKQKSKSRGLPSQVSMATVNPPTGSQDPTPLRTTADDPEAIANLFNKYFASVFLKDSLQDLNTDPEHC
APPVPELSNISFDINDILSVIRGLDASKASGPDNIPVRLLKETAAVIAPSLCQIFNKSIKLGKFPSEWKIAHIVPVYKKD
SAQQVENYRPISLLSVVSKIMERCVFNKIRERVHCLIQRCQHGFIAGRSCVTQLVEVLDTIGSHLDNGNQIDVVYLDMSK
AFDRVSHRMLTRKLVQYGFGGNLLKWFTSYITNRSQRVAIPGGVSTCQPVTSGVPQGSILGPILFVLFANDLPDSVCSCS
VATFADDTKVFNVINSADDTDVLQSDLNSLNGWAASTGMTFNQTKSKVMRVSRKRKPVLKTYSLGGLPLACTETEKDLGV
WMSDDLSWTKQVDEACSKANRTLGFVRRHSRSIKKTNIRRSMYLALVRPHLGYATQLWAPQTKDLIRRVERIQRRASKYM
LGLPFRCSQTYKERLIQLKLLPLSYWHEYLDMSYFYKIINGLVNINPSIVPKVRSVRPTRSSTNSSAPQFFARKCKTSAF
QKSYLNRCTRIWNTLTNLLNSSSYSDHASFKRALLNYYLNALSITYDPEDPRSWKSVCLTCNRARVLTHQISCCF
>CR1-17_AMi_gag#LINE/CR1 194-1256 via tfasty with CR1-6_Gav_gag, 1 frameshift. [Crocodylidae]
MVSTRRTARALARVAPPARGSSAASTQTGPWGGWSHPPPVCGGCLAGPRRPGGGGGSGSSLACPTCAHLRALEEQVRELQ
AEVSRLRGIRAAEDEIDGYFRSLQGQEPRGEATREGPTAEVWQTVTSRARATRATSVSAPQVQLGNRYEALAAVEEEVGE
DASKGTDATPSTAQAESYRNTKRKRRRVLVIGDSILRGTEGPICRSDPMAREVCCLPGARIRDVTEMIPDLIRPSDXYPM
VLIHVGTNDAARGNPDRIMRDYKALGAKLKETGAQVVFSSILPVSRRGRRHETCIGEVNRRLRSWCYQAGLGFLDHDPHF
RTEDMLGRDGLHLSPKGKRVFSSRLADLVRRALN
>CR1-24_SP_pol#LINE/CR1 1-2856 [Strongylocentrotus purpuratus]
TDTDRGKQSKFKRKLRDRKLQIFYTNCDSLLNKRNELLLLLQSHDVDLVLLTEVFPKNHQNPLTHRDFILEGYDLHCNLE
DGNRGVAIYIARDLYHLVGECDLQHSFHESVWILITLRGSDKLLIGCMYRSPSLDNHEELKRAFTQVTSINSSHVLIAGD
FNYPNIDWKLGRARSHTEQEFIETVADCYLHQHIGEHTRYREGQRSSMLDLVFTNEDGMINHIDYVPGIGRSDHIGILFG
LTVYTPDTHTPTPHLQFYRGQYDDMCKELDQIEWESELENKSVEDAWEFFLVTLTEKMEKFIPKSKPKHRRKKQRWMTRE
ALRKQSQKHRAWKEAQRTKHPVDIMRARRLAKQLQTLTKQLCRNFEKDLAMNVKSNPKAFWRYTNSKLKTSCRLGELRTP
DGERISTDKGKADALNTFFATTFTDEDKGHIPKLPPRHKGETLTSISISEDDVYKKLVHLSKYKCAGPDGIHPCVLKETA
ASVSEPLSIIYNASLKEGKLPSAWKVSHVVPVHKKASKMDVKNYRPISLTSVPCKILESLIRDEIVAHLMENDLLCDEQH
GFVPGRSCVTQLLTVMEAWTEMLDKGTPIDVVYLDFKKAFDSVPHLRLLSKLETYGICGQIKEWIADFLQGRCQRVRVND
KLSDWTKVRSGVPQGSVLGPTMFVLCINDLPDGLQGSVKIYADDTKLYGKASTKDDLCSIQSDLDALMEWSNTWQMHFNT
QKCKVLHIGPGNVKHIYALGDDVLEATSEEKDLGILIDDELKFHNHVAYAVKKANGVLSCIRRSFECRDRSTIPKLYKGL
VRPLIDYGDSIWYPRFKTDSKTIERVQKRATKMIYDIRNRPYIERLRALNLPSLEYRRRRGDMIQVFKIIHGLERIPVDT
FFEHSTSNTRGHSLKIVKQRCSTKIRQDAFSQRVINDWNTLPEEVVTATTVNAFKARLDRVWKDKRFCSPYE
>CR1-30_BF_pol#LINE/CR1 3-2171, fragment  [Branchiostoma floridae]
SEDLTRPEYFKYNKGDYQQMAQELDTDWEELLLGKSVEESWLLFADRVKGATEKCIPKATLKMKEGLPWRNRDLKSKLNK
KQKAWKKYQESKKDKDYKSYTKARNQARWAARKAAKNYEKEMAYNIKGNPKLFWKYVNSKSKTRESIPELNDGNEIAKTD
REKAETLNKFFVSTFTEERTGTIPQAKKQNVNALLSMVELSVEDIGKRLKEVNQNKTMGPDGIHPRILKELAEILAKPLY
IIFNKSLEEGRLPNDWKVGHITPIFKKGSKKLPSNYRPVSLTSVTGKILESIIRDEIVDHMRAHSLFTENQHGFLPGRST
TTQILECLDDWTNWIEQGWPVDVIYLDFQKAFDSVPIERLLRKVESYGICGNLLQWVRSFLTERKQRVCVNGARSSWANV
TSGVPQGSVLGPVLFTLFINDMPEVVQSKSKLFADDTKVYRSVCNIKDCEYLQKDLNSLQEWANKWQLRFHPSKCIVLRV
GSKHPEFTYHMIDQSAAKVNLTFNKEEKDLGITIDQDLMFENHILSIASKANQMAGIMWRTFHHVDKEIFTLLYKSLIRP
HIEYGGPIWSPSTWRLTDLLENVQRRATKRVPGLKDLSYEERLRALKLPTLLYRRLRGDLINTYKYVHGLYDTKPCLTEK
IRDSRTRGHSLRLTRCASNNSRRQAFFSSRVVPWWNGLTEEVVTAPSVNSFKIRLDRLMENHPVVYNYRALDNPHKPNIT
VS
>CR1-25_CQ_pol#LINE/CR1 979-4170 (skipping tandem repeat) [Culex quinquefasciatus]
MRAPRLPDATTSSFSYRTRSPAGCSHQSRPGAGVGVGGGVSQPVLFGKYQFSTPHTSPDARSDFSATVPPSTFVTLAAPG
CVYHGTMEDLGSANSGMPAALTASDPASASSERGFLNVYYQNVRGLRTKTNSVLLALSSCDYDVIIFTETWLVPGIKNSE
FAAGYDIFRCDRSAETSSLQRGGGVLVAVKTGRNCKDVELVGCGSLEQIAVRIVLPHQALFICCIYIRPASNIDVYQLHT
GAVQQILGMAGVRDLVLVVGDYNLPALTWFFDDDTHSFLPINASAEQEVLLLESMLSCGLLQINNLASAHGNLLDLAFVS
DATAAELIDPPCPLLKPDAHHKPILLKLDYDHGGNDDLDDADEIFDFNQCDYALLNERISAVDWDTLLDTSSVDESTANF
YERLNSILHEVVPKKIRRMSHRYKLPWWNDELRTLRNRLRKATSRYMESKTAWDKVTVQNIEDEYNALNQESFRSYINNT
QRSLKSDPSKFWSYVNSRKNANRTPTDVSYRDLNSTSPAIAANFFADFFKSVHSSDAIPPRDHEFEYVPTHYLPLPLPVL
NDEETLKALSGVDGAKGPGPDGIPPSLIKACADSLTVPVKRIFNDSLRKGVYPAMWKVASITPIHKSGSTKKVENYRPIS
ILNCLAKVLEKIVYDRLYAVVRPIISDDQHGFMQKRSTTTNLLTFVHSTVNALESGEQVDAIYIDFEKAFDKVPHALTVR
KLRKLGLPAWITNWLLSYLTNRKAFVNLRIARSSTFDIPSGVPQGSHLGPLIFILFVNEICALTNSNTLMYADDLKLFRS
VKNNVDCCSLQMDVNALLHWCESNGMKVHVKKCKVISFSRSRNPLRFDYTMGDGCPLDRVNSIRDLGVTVDRKMKFNEHI
ALTTGKAFAMLGFLKRNTAHFDDPFALKVLYASLVRSVLEYAAVVWAPYHVTLAARIERVQRAFVRFALRKLPWNNPLIL
PSYEGRCLLFRLQSLAERRTLMQRLFVFDLLRGNIDCRSIRNNVRFNEPARQGLRGERPLLWIPRHIFDYGYNNPLDVCF
RQFNEICSCFDYVVSKTVFKTRIS
>CR1-88_HM_pol#LINE/CR1 882-3953 [Hydra magnipapillata]
KKPKTNQLKANSTQKSKAKQSNPQPTIHQESVNKLHFWAHNPCSLNGSKKDELTARIQSEITNNKPDIMFFTETWFNDNS
DTNIEGYQAIIRNRDGRSGGVAIYIKNNLTVSETNIEILQKPANIEQIWRIIKCQNDSVLVGCIYRPHDLDDNVLAQIIN
SIKAAKRSLESLKCSSLLLYGDFNFSHTTYEQLDTGGNSATAAHILNEHQTDIKFQKCLDECHLTQTITFPTYRNSLDVR
PVSTLDLIITDEPDRLIFLEECEPLGRTPRGQAHCMIKGTYALPESSLQGTLTNPRFIWSRANFDMLSAYITAHDWENTV
GLSSTRENYKILIEKYKEAVKLYIPSTTKPFKEKKEPWNTQSVNEAVNNKRDTWRKFLAAGSSLKDSIRLEHKLACKKVS
KEVRKAVVDYEMGIAYVFKSDPIKLHNHVKHKKLVKDTIRTMEDLSGNITTDKNEVAKILNDYFQSVFTTDPLDQLPNFE
ARTEVICDPDDSFITESNIRKRLESLKESKSMGFDGIHPRVLRNCAKAFARPLALIFRKSFNEGIVPDLWKRSNVSPIHK
KDSKQKAANYRPVSLTSVPCKVMEGTIHETIMNHCIANDLITKEQHGFLKKKGCTSNLLETRDILTESVHQGSAVDVIYT
DFAKAFDIVSHRRLLHKLQAYGIRGALLKWIEAWLSNRQQRVVIDGAESEWKEVTSGVPQGSVLGPLLFIIYINDLPDNL
QKHIKIYADDSLQKHIKIYADDSKIIRVIDNDDDVKSLQTDIDSTVAWSHEWQMSLNLDKCKVMHVGKAKNKSTQLYTMT
GRNGIVHNLETTTLERDLGVLVSDDLKVCQQVESASARANSMLGRLKKAFRSRGLVLWKTLYTTYVRPHLEFAIQAWSPH
LRKDIEKLEQVQHRATKLITEIKNDSYETRLQKLGITTLETRRTRGDLIQNFRIQNGFEVVSFFHKQQLAPSLSTYNLRG
HNQRLERQNVNNCEERAHFFTNRVVNPWNALAPNAIRAQSVNAFKDHIDGKRASSVILLNDLSA
>LINE2B_CE_pol#LINE/CR1 12-3040 via tfasty with LINE2A_CE_pol, 1 frameshift and 2 stopcodons. [Caenorhabditis elegans]
CFSTYCSLDNSSSSSSYLSPPSNPIPQTSDYTSLTVDTHISERLSSSQQFSSPPGSFIPSLDNLTLKPMSLANVRGVAVL
PKIIMLKEFFTSSDLDILFLTETFLNNTVPSGLFASPLFCFRKSRPxSRTSFxGGGVAIMYKNSLKISIRNINFETHYPK
HRCEILAFDILNTHSPAPPLTVFLVYRPPCCSVAENASLIAHLEDYLPLSRTLLTGDFNFPQINWSSPNASSHPFASFLC
SSDLSQRVRFPTRVSCTSSNILDLVACSSDISVLDLAPQPALLNSDHLSVEFKIPLPYPTVIPSCSSSQDSRNVLLYDYK
KCDFPSLNRDLACINWQFEFSFLNSVSDKFEHLLSILENLLTQYCPTKSMIPTSSIPPSSNSLWKLKRLRQKISKLVLSR
NCPPETIIIAQAKYRKLYRNYKNSLRRSENGIVSSSNYAKIRRLINSRLKTLDLVPAIISDNKTIVSDSDKSEIFAKMFA
SHYSPENTQLPDPLLNSPRNSDSTNSNSTTNSIRNDSFQPYIIESVLSKLPPKCGFSPHCANYLVLKKCATPLALPLSLI
FHQSFAESTIPARWKQAIIIPILKKGNPSSPHNYRPISLTDPFVRVMERIICSRIRTDFSHLLSPHQHGFLQLRSCPSSL
VRSITLYHSIIRQEKSLDIIFFDFAKAFDKVSHSILLKKLASFGLDPLTCSWFKEFLNQRTFSVKINKFLSKNTYPISSG
VPQGSVSGPLLFILFINDLLIDLEHSINVSCFADDIKIYHHNPLIIQQSIDTIVSWSKKNELPLAPAKSASLSLGSLNTN
HSYSVDGVPIIPSSTVRDLGLVTDPKLKFEAHIAKVSSLAMLRAKQLLKAFSSNSPHFYGFLFKTYVAPIINYCAEVYSP
SPNSLLSTKLEKPLRHFTKRVLQRCNTKFSSYEDRLSIMKLFSTRHTRIKAQMKLLYRFLTGSSHFPSLNQFVSFASSNR
HPMILVRKDSCTAHFFAQSVPIWNNLFKNVPVFLSPFQFSHFLDLHIPRY
>CR1_Ele26_pol#LINE/CR1 3-3278  [Aedes aegypti]
SGEGVFHRLHSGKYLQVDCDSCTEVVSFDSAYDVDLSASNELRTCNRPPQTTPSVLXDHPSNMRPTFSPHSGRTASSTME
APTPPSTVEFLQPAFFSRPDPVVGCGEGVFQPVQSGKYVENADCLLPDISTPSSLRIYYQNVRGLRTKIDSLFLAVSDLD
YDVIVLCETWLDDRILSSQLFGNLYSVFRTDRSALNSDKRSGGGVLIAVSSRLSCSLDSAVISNELEQLWVKIVLPRNNV
SIGVMYLPPDKKNDIGVIHRHIDSIGAVQSLLQENDMALQFGDYNLSNVFWSSNXDDNVSIDLTRSRLNPASSTLLDGFC
FHGLSQVNTLVNGGDRTLDLVLVNDVVMQNFSLFEAIEALTVIDIHHPPIELVVSCPLPVTYEALFDHTGFDYKKANFES
LNSALYLIDWSHLDCIDDVNESVAFFTNSVMQVVAEHVPLRRPPSKPPWSNNRLRFLKRRRSAALRLYRSHRSQESKLHF
NRSSSEYRSYNAYLYARYKRRTEQNLRTNPKQFWSFVNAKRNEDGLPTSMYLGDLSADSASDKCELFAMQFRRAFNDSIS
QQNQADHALQDTPHDVFSYEMFYVTEQEVTRAISKLKLSYNPGPDGIPPALLKRCSATLLRPLTKLLNQSLRLQQFPACW
KKSFLFPVHKKGDKRCVSNYRGITSLCACSKVFEIIINDSLFDCCKNYISTDQHGFFPRRSVESNLVEFTTLCIKAIDAG
KQVDAVYLDLKAAFDRVDHRILXQKLRKCGVSTGFSNWFDSYLTDRSLCVKIGSCESASFTNISGVPQGSNLGPLLFSLF
INDASLILPPGTRLFYADDAKVYMIVNGLNDCIRLQSLLDSFEAWCVRNFLTLSIEKCQVISYGRKRNPIRFPYKLSGTT
LERVQRVRDLGVVLDEELTFNYHYDDAISRANRQLGFVLKVXDGFRDPLCLKSLYCALVRPILEFAAVVWCPFHASWITR
IESVQRKFVRRALRNLPWRDPRNLPPYHDRCRLIGIZTLENRRHVAQTAFVSKLLKGEIDSPSLLADVNVYAPERTLRRR
HFISLGSRSTLYGQHDPVRFMTAKFNEVFHLFDFNVSITTLRNRFVQYFGRN
>LINE2C_CB_pol#LINE/CR1 100-3117  [Caenorhabditis briggsae]
EIXHRTRSDIYHHDTTCMSQRLFKSINVHSNVIVCPTVAPRPVSDISPCHIAAPVLSPFPLKPLPKTNPLPASAVKSAVI
NLSCKLSNVRSIASAERLQVLHSDMLDNQIDLHFVTESFLSPSVPDSLSSSSTLHCLRFDRRSPNPKGKGGGVAVFARKD
IQLVEADSLSSQFYPLHHCEIITVDLLQISCRFVLVYRPPSTSPAQSDVLFHNLSLLLSNSYRFNFLLGDFNYPQINWSS
DNLLPNDLPAGLESLMSLSDLTQIVDFPTRTSHCGAENFLDLVFCNKPQHISKTVNLPPFLLSDHSSVLFETILPSISPP
SPILNTTSSKRLDYIKCDVKRLLDHLCSYNWPRQLSFFSTVDSKLAHFSAIFNELVVLYTPTVRARRPTFSHRKPKVFRF
IQRRNPSLPRPQLKLLVRRQLNRVKRARAREELSIINNKNPKELFHFVKSRLRPPHCPISLLVNGTLSSDASELANEFSS
VFQEAFSPPSPPFSALPAIAPFAVCPDFSPLNIAKHIGSLPSKVGFSPDFINFLVIKKCSDAITIPLSLIFQESFSSAKF
PEIWKHSVVSPIFKKGSKYDANNYRPITLTHALSRLFERLVLEELKRVIGPSISPNQYGFVSKRSCVLAVLESTSRIQKT
LANKQQFVDVIYFDFRKAFDTVPHNLLLLKMRRIGIDERCCVWFESFLSNRSSNVKVNGLMSTSEIVVKSGVPQGSVTGP
FLFLIYINDLLGLFPPNVHVTAFADDLKITGSDPLDMQRSIEIVEHWCDIWRLKLAENKTAVMHYGKRNPKTVYFIKGSP
ITPHRSFKDLGILVDDQLQFDKHINLIAYSAKLKSRQILKTFQSKNPCLYFRLFDTYIRPVLEYGCELFDPSNATLANKL
ESPLRYFTRKVFQRCNMPFNSYTDRLSQFSMLTTLHRRTLLVLRTYHKIVINSYHFPSMSSYILPSHSNRAPYLFKINGQ
YFDCFLHRNLSMWNRVCKVINSKLSPVAFAKRVGAIPYDILIPPT
>Perere-4_gag#LINE/CR1 22-1674 [Schistosoma mansoni]
MPTVRLVDIKSEMPTCIKSTQSTRPHALLRPRSNIPKTKESNSVSHVYENADRYSTDIRQLQNSLAEIYSRLNQLAPLTH
IWGINTDKNLEQLTKAECILDFVAEEVTKRMMSSHNAVVYNLPDRIHPNKLRDICLKACDMLKVNCQVIRLRKKSDRLTC
PLLFKFGCCNDAKQFIDLSKNISSLVPYKSIKVTPDLTPCQRRIRRREAIESYDRVIVKNQLKTVCNEMIDIKRMDNKHD
VIPQTTGPSVDLDESADLKSLNKIRSPSVTKRRDGISDPGCSLSIIPKCGPCNETHPTKHIHVKIGSPRDTPQEDSKEPK
FISQRQRNPSSLTKKTGEIKSKIRNRGTRKIEANCSVGIPTTVNRFYPLISCNLPSTPRTMGSTLERNKPFYTHTHKNYQ
NTGHSTHLLKSKTVNNNSNYRFLTPHPMYIPQDHNCNYSQNENFPVSTHHMKTASIHNNSRNHFQLRASDPPHARTSANS
YNRGYELNHQNCLANNSTLYSQHVPDFFGIRPLVAPLLKHIALVISNQVRNINSLPPYSSHQKVLLPFPPG
>LINE2F_CE_pol#LINE/CR1 1-750 fragment [Caenorhabditis elegans]
DHVVLQKGIDTVVEWSISNSLPLAHAKTALLRLGSKNPVHPYLIQNKLIHETSTVRDLGLITDSSLNFKAHINRTVALAL
LRSKQLLKSFKSSSPSFYAYLFNSYVLPIIEYCSVVYSPSPNSKLSAHLEKPLRSFSRQVLQRCNISFTSYENRLLILNI
YSIRHRRLKAKLLLLYKFISGTSYFPNLNDLIRITESKRRPMIIICTKPKITDFFTSTVPVWNAIFHNTPHFLSPREFVK
VIDSSITRF
>CR1_Ele20_gag#LINE/CR1 254-1573  [Aedes aegypti]
MPVEMDGEEGEHGCCNQPCAQCALPIRDGDASVECFGRCKLSIHVHCLPDATNEEIVLLRKIRNAAFVCDACLSLAEFDD
RHSEKRLDEIAKKLEDLAGVAEVVKNFDQSVKRIVRDELARANKRDAAALGDKDDVSHRMVTRSSAKRRKIDNLGNRVEE
EVTPKSTFAEVLKKRSEKRVIEQPKKILPVQKPNPVVVVKPKSGVQVEDVRAELRKKVDARQLNVQRVTSGKSGEVVIAL
KDEQSVKLLRENVEKNMGGLYDVHVRESIKPTIKLIGMSEEMNEQELKETLIDQNLAFENLKHFKLCKSYCNEKLRFNNV
SAIIELDAETFRKAMLEERLNCGWDRCRVVDGLRVTRCYNCCAFNHKSKDCKATTPKCAVCSGNHLVNECKSNVNECANC
KKMNTDRKLRLDTNHAAWSVLCPVYQKQLEQRKSFVDYSV
>CR1_Ele2_gag#LINE/CR1 226-1056  [Aedes aegypti]
MESICFACTNTVKKEDEILCNGFCRSSFHLQCVHQSEEIRNTIADCSQLYWMCKACSKMMSNANFRQAISSTNNVISLMT
DEYSKALDELRQEIANNTFKINTILQRTPLPSTPHIPRSQLSVPSRKRPRLIADDSSHHDNTSVGTRELAPDESIPLAAP
RKADQFWLYLSGFDPQATVPQIEKLVKNNLNTDKSFDIVKLVPKGKTLDELTFVSFKVGMDLQLKDTALSGSSWQKGIIF
RQFDFNHSTSTRQTFRFRPSPRDDHSQQSPNITSYHQ
>CR1-G_gag#LINE/CR1 220-1296 [Gallus]
MVSTRQQAYSKKTVATQTEGLPRNVAVQVSGCRECLSLLLPGEGGRDSTCVRCEQVDELLSLVVELKEEVERLRTIRECE
REIDWWSDSLACQREGCQGDTPRKVVDPLPCHSRTDLTDEEGWKRVPTRRHGSPPRLPTPLPQLPLSNRFEMLEIEGEVS
GEAMEDLPRREPKARRSPPRLETASVRKERRVVVVGDSLLRGTEGPICRPDPSRREVCCLPGARVRDITRKLPKLVRSTD
YFPLLIVQVGSDEIAQRSLRTMKRDFRGLGRLVQGVGAQVIFCSIPSGAVRDTERAWKAQVMNNWLRGWCRGRNFGFFDH
GAVYSAPGLLSVHGTHLSQRGKRILAQELAGLIERALN
>CR1_Ele2_pol#LINE/CR1 1052-3952  [Aedes aegypti]
INERSSAQLRNTQHTTTPRETITLYYQNVRGLRTKTNDVFLALSESDYDIIAFTETWLNNDIHNSELTHNFTIYRCDRNA
SNSCFQRGGGVLIGVRNCLQSTSLTIAECECLEQIVVRITLPDFDLFVCAIYLPPNSDTILYEQHSACVQHLLGLAGDHG
RVVVIGDYNLPHLCWMFDEEISSFLPVNASSEQELALIESVVGCGLHQINDLTNANRRLLDLAFVNDDKYVELLEPPQPL
MKMDNHHKPFVLKFESTMRSECDALDPFDFDFKQCDFSSLNEQIAAVEWNEYLNGCHIDEAVATFYDQVYGILRETVPLN
QRRRGIGKRQPWWNNELQRLRNRLRKARKRYFRSKNEQHKVELRDLESEYNSLHARCFSCYIRRTEENIKHDPKSFWSFV
RSRKQTNSIPQHVFYKDVNAETPSDSANLFSSFFRSVLSNNRSPSSEEYLSSLPRYDLNVAVFNFSTRDVCCKLRGIDDS
KTAGPDRLPPLFVKNCADSLTVPATILFNRSLSEGTFPCVWKNAAITPIHKSGNMNNVENYRGISILSCLPKAFESLIHD
SLYPHVQHIISEFQHGFVKKRSTTSNLMSYVSSLVKAMEKRQQIDAVYIDFTKAFDRVPHSLSVKKLDKMGLPSWLTRWI
LSYLTERSAHVRIAGISSDPFEITSGVPQGSHLGPLLFVLFVNDLCEVIKSQKLMFADDLKLFRVVSSLTDCCAVQADID
ALVRWCMLNGMEVNVQKCCVITFSRKRNVIDFGYRMSATNITRVNTVKDLGVLLDSKLNFAQHIAATTAKAYAVLGFIKR
NTQEFEDVYCLKSLYCSLVRSILEYGVLVWAPYHTTQSNRIERIQRNFIRYALRRLPWTDPVRLPPYEHRCALVHLETLA
CRRVLLQRLFVFDILSNNVDCSVLLTNINLNVPARTTRQADFLRFPVHRTLFGQNNPFYVCCRRFNEVSDRFDFNMSKLT
FKRSISS
>CR1_Ele11_gag#LINE/CR1 14-811  [Aedes aegypti]
MAFCDRMIHLRCSPTKLNKPFVNIIQSCPNLLWICNECVKLMKCARFKSTVSSFGNALELITEKQEIAHAELKREIAKQG
QQIAXLSKGIALSTPTHSKSGLTPRQPPLKRRRDESLLPNKPLVGGTKVATDNNVTTEVLTVPEPAELFWLXLSRIHPSV
KPEAIEKLVKDCVQCEDSVKVVPLIKKDTDISRMSFISFKIGMDPKLRETALSAETWPKGILFREFESGNSKNMWFPRLN
TPTVTISPAPGPSQYSTPTTGVEPMC
>CR1_Ele3_pol#LINE/CR1 1578-4493  [Aedes aegypti]
VEPTESSNIPDVLPALSDRGLPRSQLTVYYQNVRGLRTKTNALLQQLLSCDFDVVIFTETWLHTDISNAELTSNYIIYRC
DRSSRTSVLRRGGGVLIAVKSELNCKAVHLVDCENLEQVAVHITLPHKSLFLCCIYVRPCSHPDIYIKHAESVQELLDKA
TPFDTTIIVGDYNLPNLSWDYDDDVQGFLPRNASAEQELVVVDSLLSTGLKQINDLVNDNGKLLDLVFVSDTESMELFEP
PSAMLKVDRHHKPLVLKLDSQSPPLAPASERSEYNFARCDFNSINERLATLDWMQLLNLPTVDAAVSAFYDNINQIIRET
VPLKTRRPTKLFNQPWWTPQLRNLRNRLRKARKRYFRCRSLENKCNVQLAEAEYASLHEIRFRDHIKNIQTGCKENPISF
WSFVNARRRSSGIPVDVSYCDRSSSTDTTSANLFAEFFQSVFEITESPAPQQYVDQLPSFNIHLPQPEFSLDIVYRALSS
VDASKGPGPDRLSPVFIKNCAASLATPIMCIFNRSLQEGVFPDVWKLASITPIFKSGNLHRVDNYRPISILNCLSKVFER
LLHDMLYPAVQPMISEFQHGFMKKRSTLSNLMTFTSSVVENVEKRQQVDAVYVDLSKAFDKVPHDLAVEKLSRLGLPPWI
VNWLKSYLSSRKAFVKIRDSSSNVFEITSGVPQGSHLGPLIFILFINDVCDHLRSSKLLFADDLKIYRVVKSTLDCCVLQ
ADIEKLLSWCQINGMQVNASKCKVITYTRGQSPIRFDYTMNHAPLERVYSIKDLGIILDSKLRFTEHISKTIAKASSMLG
FMCRNAADFDDVYALKTLYCSLVRSVLEYGVQIWAPHHAVHELRIERIQKRFVRFALRRLPWTNPDSLPAYEHRCALIGL
ETLSKRRTSLQRLFIFDMINHHIDCNSVLQKINIHAPLRQLRNTNFLWTPAHRTAYGYNNPLDRSCRLFNGVYDLFDFNI
SRLVFKNRIKNI
>CR1-2B_AMi_pol#LINE/CR1 1868-4780 [Crocodylidae]
LSPPGVGGITATASPLGNPCKSSRLRHSREPTPTPAPERSAGKARAPNGTLACLYTNARSLGNKQEELVLLLNKNDYDLI
GITETWWDSTYDWATGIDGYTLYRRDRADKRGGGVALYVKESYTSLQIDIGTQEGRLESLWVKIRGERGTGDIMVGVYYR
PPNQKQELDQEFARELAEAARSRCMVVMGDFNYPDISWEEHSAKSDRSQSFLTCVDELYLTQEVYGPTRGKALLDLVLAK
GDDLVSDLRIDGKLGDSDHELITFTIHRKAGKSVSNAEVLDFRKADFDKLRRLVVEALRDHDSTGRGVQEEWLLLKGAIL
TAQGMAIPSRRKGSKRAQQPPWLSRELEDLLRLKRETYKGWKAGITTKEEYSALVRTCRERIRKAKAATELHLASRIKDN
KKSFFRYVGSRKKSKGNIGPLLNQTGQLITDTQEKANLLNGYFASVFHQSNGTALPSKTRDGQGEGVFIPSIGVDLVKDH
LERLDTFKSAGPDRLHPRVLKELAGVIAQPLAKIFENSWRSGEVPEDWKKANVVPIFKKGRKVDPGNYRPISLTSIPGKI
LEKIIKETLLDKLAEGNILRDSQHGFVAGRSCLTNLISFYDQVTYHLDKGEEIDVIYLDFKKAFDLVSHDLLMEKLANCG
LGYTTVRWLGNWLRGRTQRVVVDGSESLWRSVTSGVPQGSVLGPVLFNIFINDVDIGVRSALAKFADDTKLWGIASTPED
RLVIQADLDKLSKWADTNLMTFNTDKCKVLHLGEKNPQHAYRLGSATLASTTAERDLGVMIDHKMNMSHQCDVAAGKANK
TLACIHRCFSSKSQDVILPLYSALVRPQLEYCIQFWAPQFKKDVEKLERVQRRATRMIRGQENRPYEERLRAMGLFSLEK
RRLRGDLVAAYKYIRGVHQDLGERLFTRAPQGKTRTNGHKLLQDHFRLDIRKNFFTVRAPKTWNRLPPEVVQAPTLDSFK
KRLDAYLAGIL
>CR1-2_DWi_gag#LINE/CR1 582-1472  [Drosophila willistoni]
MACCLPTCKHSDRFDDQYRAISCWLCDNLIHLKCAGLNGRDYDKFSGLSVSKPELGLMRWTCPSCASQQLDFSRMYRDIR
LKFLSLNKLAKQLSNECDSSVHLLSQFKFVPPSEKSPKKCTLELPRKQSPALSITSSPILLSPTPSSCPSLCSSFQIEVP
ITSPGVPHSIPHGNSDQSQDHASSQSLADPNAPPPPLTVVPHRKQLFISRLAPDTSESSVAAYISNICPAKVLIQKFKFS
RPREISSFKITVPNEYFSAMVDTNFWPEGLVVHEFAPNKRSRPLPVHLPNLSSASKN
>CR1-2B_Crp_pol#LINE/CR1 1572-4479 via tfasty with CR1-6D_AMi_pol, 2 frameshifts. [Crocodylidae]
LASLGDGATGGHEDTSQPRQVMSTRSTQVSDRGPDSPGIRGVVHAPIGGLKCLYTNAHSMGNKQEELALLLANTNPDIVG
LTETWWDSTHDWAVNIKGYRLFRRDRMGRKGGGVALYVKEQYTSSTNSTGSEEGQTEVLWVRIQGGRGERDLTVGVYYRP
PNQGEELDWEFSGQLAEAVRSRDVVIMGDLNYPDICWEEQSARSDHSRRFLAEIQDLHLTQEVHSPTRGNALLDLVLATG
DDLVRGLQVLDHLGDSDHRLLEFTIQRRVSKACSKAAALDFRRADFNELRRLVGEALRSRRVGELGVQDEWSFLKETILR
AQRVTVPTRIKGGKSAQKPPWLTKGIQECLKAKKEAYTQWKGGAITKEDYTSIARDCRGAVRKAKAETELGLVTRIKDNK
KSFFKYIGSKKKAPGNVGPLQDTLGNLVVAPDDKADLFNKFFASIFLSRDWDIPPTGIPDGLRRGTARPRVREDLVRELL
VGLDVFKSAGPDDLHPRVLRELAEVIVGPLARLYKHSWCSGEVPEDWKRANVVPIFKKGRKEDPGNYRPVSLTSVLGKLF
EKIIQEHICEGPAGEIMLRGNQHGFIRGRSCQTNLVAFYDQVTKSLDAGVVVDIVFLDFRKAFDTVSHPILIKKLGDCGI
DAYTVRWVTNWLEGRTQRVVVDGSFSTWRDVGSGVPQGLVLRPALFNIFISDLDEGVKSTLFKFVDDTKMWGXVGMLEGR
DRLQLDLDRLQGWADENRMGFNTDKCKVLHLGRKNQQHTYRLGNSLLISTEAEKDLGVIIDSKMNMGHQCEDAVSKANRT
LSCIHRCITSRSKEVILPLYATLVRPQLEYCIQFWAPHFRRDVDSIERVQRRATHMIRGQQGRPYEERLRDLNLFSLHKR
RLRGDLVAIYKLARGDQQAMGESLFPRALPGVTRNNGHKLTESRFRLDIRRHYFTVRAARIWNQLPREVVLAPTLGVFKR
RLDNHLAGVI
>CR1-4_AG_pol#LINE/CR1 1430-4327 [Anopheles genus]
MEPVLNTFNIFYQNVRGLRTKTSECFANTAIADWDVIVLTETWLDDSFPSELLFDNNRFNTFRTDRSAANSNKCRGGGVL
VAINANYASSLCSTNTSTIECLWVRVKVLNVSLIIGSFYLPPDQSANMDTINAFCNSLHLTREKYKNDFFILFGDFNQPN
LKWDINGKFPTLNLMLTRLSPTSQALLDELSFEGLRQLNTVLNHNNNMLDLVFANDKVTDYMRPIELCIESIVEPDGHHP
ALLTYFTLPQYSVPSSKPPRQADFNFRRTNFTDLVSALNQINWDSIADHDDINDSVAEFSSQMNELYEQFIPRFNVRAHP
PWTNSALRLAKRRRSRALKKLHRLKNSTNQINFARASKIYKQLNRTAYANYVRKIEINIKRHPTSFWKFAKDKESCGRLP
SSMQFEGNTITGDEEFCNAFASYFSSVYTNNSSVPSNSTSALSFINDEVNLCTPLINDDEVESAISLLKLSYAPGPDNIP
SAILINCKAALIPILTKLFNKSLQSKCFPRLWKSSWMFPVYKKSDKSNVCNYRGISMLCACSKLFEKIMSRHMLQAFSPL
ISNVQHGFMPKRSIETNLIYLLNFCHSYIDKGLQVDVIYTDFCAAFDKVNHFLLLSKLSKYGVHTNVVEWLRSYLTDRCI
NVKIGTSLSATFHNLSGVPQGSILGPLLFIIFINDVVFAIPHVKLLLYADDLKMFLPVKYSDDCEMLQDSLNYFSAWCFN
NEMLLNVSKCSCITFSKKKNPIIYNYKINEDSVPRFSQVRDLGVILDSKLSLSSHYQTIVTKALKLLGFVLRVSADFKDP
FSLKTLYCSLVRPILEFASVVWCPHQITYIDKIEKIQKKITRVMFHRLPWSNQIPRPSYNVRCLLFGLETLQHRRTTAQI
TFMHKLLIGDFDAPDILNFICFSTPSRGLRSRELLRSPFRSTGFGANDPLLKMIDVYNRLGLSADFNQSVSQLRQHIQVS
SRAII
>CR1-3_NV_pol#LINE/CR1 17-3553 [Nematostella vectensis]
MALQIALSMMVTCLFMARLANGSEMWTKQLDLERFSFKFKPVSFVITEPNCSFTFACITEQSSRHRLASLPRSYHKSVSR
VTLFLLIMASDCSLLNPGPVKYPCSACTKPTKSNQRAICCDECGQWTHAKCISMSYNSYLRYSNNPNLTWICSSCLSPNF
STRHALEDLSIAGRNSFAALGSLDSNERSPDSSLEMSSSETFEFPPGRVRSSTPLRNAPPNQRRAKLRCMEINCNSIQSS
DRAAVFASIFATHDPDIILGCESKLSPDDPTYSSFPTEYTVFRKERRDIGGGGVFIAVKSGISAFERQDLTTNSEDESLW
VSIQLAKTKTLHICSFYRPPDSPSIRLDYLSESLFKLFHSNKKSHPNIVVSGDFNCGDINWKCDLPEVTSHATASLMHKL
LDMIRDHALTQYVTVPTRPASLKTLDLVLSSVPSLVSHVQVKAGMSDHDIVLFDINVKPRKSTRPPHKVYLYHKADMEAL
REDILSRTTEFLDQCTHNNLEENWSSFKNILIDAIDRHVPWKMTRAKPSLPWISRSIKRQMRKRDRLFKKAKRSCDKLSA
AWVHYRHQRNKVVNLVKASHRIYLDSVIGGSLHENPKRFWSYVKQARCENIGIPTLRSGDSLYISDSDKAEVLNTFFQSV
FTQDNGILPNSTPSVSNIKDISDMEFFQPGVEKLLAQLDSSKSPGPDGISPRCLKELSKEVSGMLTVIFQQSYNIGALPN
DWLTAMVVPVYKKSNKADPANYRPISLTCLCCKTMEHIVLSHLNKHLSRFNILSNAQHGFRQGLSCETQLVLTFHDWATV
LNKHGQVDALLLDFSKAFDKVSYPKLIHKLSRYGIKGNTLTWISAFLHNRSQFVTVNGSHSATCRVTSGVPQGSVLGPTL
FLLFINDIAESSNSRLRLFADDTVVYREINTEQDHHALQADLNNLINWASDWQMSYNVTKCHLLRVTNKRKPSECTYYAE
SAALSQVPQCDYLGIKCNESLRWGDHCTKITSKASKTLGLLRRTLRPCSKEVKERAYLALVRPSLEYASSAWSPYTDSDV
NRLEQVQKNAARFVCSDYRITTSTSQLVKTLGWDTLEDRRLRNQSTLLYKFHNNLIHCQPPDDLRRNENIRSSRRHSRTY
HQLQANILAFNYSFFPRTIRTWNLLPAEVVNAADLPSFKSALAPAISELKVPSHLRRL
>CR1-2_DPer_pol#LINE/CR1 285-3202 via tfasty with WORF_DMi_pol, 1 frameshift. [Drosophila persimilis]
CSICNSVCYIFCSKKLASPSTLKIAYQNVRGLGSKLNKLHTDSATFEADIIAFSETWLHPSISDSEILIDKFNIYRSDRP
SRGGGVLIAVRSDITSQLFSVEAHNNIEIIVVKLRLSSINLFISCSYIPPSSEFSTYMLHAALFQTVSSQLNESDFLIVL
GDFNLPNISWSPSKDSNQMFPIIQHDFVDSLSDSSLGQINGICNSIGRILDLVFTTDSTNTLVRRGSPLSFPEDLYHPTL
EIDVQLPSPGPTKSCIKPSAIFCFKRADFTSLNSALSLIDWSFLDDFREIEPDTNAFYSTVFSIFPTFVPLVSPLRNLSG
PIWFTPRLVNLRNIKSRLYKRFKLSGSQSDFSKYSIAKSKFSICNTLCYNSYLAKCKLNFKRDPKQFFKFVNSKRNSSQY
PSSLHLNGTYADNNSDIANLFASFFQLCYSAPSNNMPSILASPHDYPAAHSYPIPFNSSSCIHPPFIDYDGLLTNLKSCK
FSFSTGPDLVPSAVLKLCADSLCVPLLKLFNLSLELGDFPTVWKESYIIPIHKKGSKSDVSNYRCISNLSAIPKLFEKII
TSQLQHFCSSLLSESQHGFVKRRSVSSNLLEFSSFVTAGFAKQCQTDVVYTDFSKAFDSVNHNLLIHKLSLLGFPTKLLH
WTNAYLCNRSQRVCFQSSLSKPVFVSSGVPQGSHLGPLLFNLFINDLPQVLTNSRVLMYADDVKLCFSYSDPVSPLFLQS
DLDALNNWCTINALPLNISKCNVMTFHRNKPYLFDFTINNISLERLYKVNDLGIIFDSELMFFNSHISAISNKAKGVLGF
IKRWSKEFSDPYTTKLLYVSLVRPILEYGSCIWSPHYQKYQDMLESVQKQFLIFALRGLNWDPSRHLPSYESRLRLINLH
SLESRRTCHGILFLHKLLLGEVESSALISLIRIAVPSRPTRHYFPLRLPLCPSNYSDHESFRSLCRDYNKFFHLFSFDTC
ASKVKSSLMNNLS
>CR1-1_DWil_pol#LINE/CR1 1606-4482 [Drosophila willistoni]
YYSCHISICWCVKKLASSLNLGYQNVRGLKSKLPNLYVDSLSFEHNILAFTETWLKPDIADASVFSTNFSIFRRDRISRI
GGGVLIAVDAALSSEMIQFSSTQEIEFVGVKVNFKSFNAFITCSYIPPLSDMVVYLNHLEAIQFVSSLVSSQDMLIVVGD
FNLPALAWSLTDESTTLLPSLSHDFIDGLLGLSLSQVNPVLNSNGKSLDLIFVLDSSYCEVSRIEPFVLPEDKFHPTLNL
KIDLPLLSPLLGSNELPLTRCFRKTDFASLNENIATTDWSYLYNCSDMNSAVRFFYDTLNSLFDICVPLGRLERLNKPPW
FSRELSNLKNVKTRYYKKFQKTRRSSDYALYTVARSKFMMLNTQCYKNYLQRCKLQFSSDPKQFYNFVNSKRKTSVHPSF
LSFQNKKASTDQAIADMFASFFKTTYSSTEYRASPYPYHLKKANCIFNPVIDESSILTELKLVKPVYSPGPDGIPGCILR
FCANALCKPILKLFLLSVESSSFPSIWKESYIIPLHKNGKKSEASNYRGISKLSAIPKAFEKIITSQLQHFCSSIISPSQ
HGFVKRRSTTTNLLEFTSIIIKGFKNGKQTDVIYTDFSKAFDSVNHTLLLSKLSDIGFPPLFLSWVREYLTNRKQKVLFK
SSFSVSISVTSGVPQGSHLGPLLFTLFINDLPSVIVHSRVLMYADDVKLCLTYKDTDSFSRLQADLKNFQSWCQFNLLNL
NTTKCKVMTFFRNSPQLVTYILNNSPLERLNNMNDLGVLMDHKLNFNTHISTTVAKAMSVLGFIKRWSKEFDDPYTTKVL
FTSLVRPILEYGSCIWSPQYESHQIRLESVQKQFLLFALRGLSWDRNVNLPSYSSRLLLINLPSLTNRRIMLGVIFMHKL
LIGDIDSPELLAQVNLSVPCRRSRHPLIPLSLSRCSSNYAMHEPFRVLCSDYNLLSPVIGSEFSINMLKTSILSHLVNR
>CR1-1_DWil_gag#LINE/CR1 641-1648 [Drosophila willistoni]
MVVCSKNNCIVATNAVDSHDYILCWLCDNAVHVKCAGYTGRIKESIAKGGGLKYGCDACREVENEMRSFMRRTRDSFDTL
RAGFNKLQAEFTAVETQFRSLSLMNESPKRKRTSPWGVSVSVDPPASLIVPDRSHAPSTPNVQQLISFKSPVVNAISNEL
PVSPGNDLLKTMPIVVSDVSGQLPIPMEIADSSKSIEGPVNKLTAAVGDLSNVTAAADASGPRPLVGIPPKKHIFVSRLD
PVVTSDDVIAYIRKKVNVSNIAVEKFKFSYSRDISSFKISVSANIFDTICREDFWPKHIIVKEYTVKKKNRQPIRLPTTT
TNTIPATSASAGVSKN
>CR1-2_CQ_gag#LINE/CR1 152-1762 Poly-Q region masked. [Culex quinquefasciatus]
MPCHINNCQITDASHLMQCSGSCGRSYHAACAGTQRNYENEITNYMIPLCRDCQGVISVEVTTRAVLLQQQKLTCDIKAL
IDANFKACNAFKQMDNKIEVVQDEYEGIATLLGEMQQQLNRLDKKIDDSTLNVCKKVSSILDDVAPADNASTLVKIDALT
SVTQQIGESQSIIGERLKNINTELIFLSGRDPGPAVNEILEEIKAISANLPAGTEQTEAHHETLADELASSSASGSPNLK
DNSGWRTLGNKRLWKADWTDYDIRTARRKEQSKLRRKANQRKRRRQHRRSSYTGTDDLDEIDYELDYSFFDNNFHLEQRN
DRLHRLCHNQLAQHLVKQPVNLLQNPQHSQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXPTQAQLIHRSAQVYSETPSWMFRPAQRSSFSETGNFMN
>CR1-2_DK_pol#LINE/CR1 1333-4179  [Drosophila kikkawai]
LNTSLLLSYQNTRGLRSKLSKLYSDSFSFASQVIVFTETWLKPEILSSEIFPGKYTTYRLDRLSQRGGGVLIAVDSTLIS
ELVQIDDLTGIEFICVKLSFPGSFIYITCSYVPPSAEEPIYWKHLSAIQAVSNMLSDRDQLITLGDFNIPGARWSSDGTS
NVLQTAAQHDLIDGLLDISLSQVNHVVNSLNRLLDLCFVSDPVGVNLTRVDPLTLPEDPYHPTFEVTIDLGTVVKTKPDL
SCSATKVRCFRKANFQRLDTLISQFNWSELYRCTDMASAVDIFYSAMNSFFALCVPLAYPSVSSKPPWFTKELTRLKNVK
SRLYNRYKRTGSPTVHSRYLSARSNFTVLNAQCYKSYLTRCRVQFTQDPKQFYNFVNTKRKPNLHPSSLSFKNATANSDQ
AIADLFAEFFKTTYCSSNSLDQTYSFDLPKSNLIFSPILTESSLSSDLHRVKPVYSPGPDGIPGCVLRYCAGALCNPLLK
LFTLSLETSEFPLIWKESFIIPLHKKGSKSDASNYRGISKLSAIPKLFENVITPHLQHLCRSVISPCQHGFMRRRSTTTN
LLELTSFVIRGFQRNFQTDVIYTDFSKAFDSVNHSLLVRKLDLIGFPVDLLKWILSYLSDRTQKVLFKNALSKFLRVTSG
VPQGSHLGPLLFTLFINDLPLVLTNSRVLMYADDVKLCLQYKDSSCQSDLQSDLNNFQAWCRANLLHLNSSKCKLMTFSR
VTPQFATYTLNDCALERISLVDDLGVRLDPKLSFSEHISCMVNKAKGMLGFIKRWSKEFDSPYITKTLFTSLVRPILEYG
SCVWSPQFGIHINRIESVQKNFLLFALRGLPWDADERLPSYSSRLLLINLPSLANRRTMLGVVFLHNLINGDVESPFLLG
QLNFHVPRLTSRTLIPLVVNHCRREFEVHEPFRVLCTDYNRLSDIIIRSDSPSVLKTLILVELARSVSP
>CR1-2_DBp_gag#LINE/CR1 455-1450  [Drosophila bipectinata]
MSLTCTAKKCEFGGTITGDSYLSCWLCNNCSHIKCAGGGHNGRISDLINKKIGLTWSCIACREIESEMRTFMKQTRNGFL
DVRKQFSALNEQFLALETQFLGLKLLSESPRRKIPNNNLLTAKLLNTPTSHAVQVDEFSTPNILPSPTXLPTYAVPVPRD
LMSLPSGHSNIHPLQEAISVPSTNLEPPLILEPPSLDIVGQPPSLDNLPSALAVMSPRPLVGVAPEVRSSGLTLRAVAPR
KAIFVSRLMPDATVDDVKSHLLNHLKVAPNEIAVFKFNFKHKRSISSFKIVLPDSYLEKALDPVAWPEHSIVHEFLAKDA
QNPIPAETASKN
>CR1-4_DEl_gag#LINE/CR1 613-1653  [Drosophila elegans]
MTIACTANKCEYNGIISGDTYLICWLCDNCSHVKCAGAGFNGRVGDLISKRVGFTWSCTSCRKMTDEMRTFMRQTRTGFA
EVRKLFNAMNDKFLAVESQFLGLKILSESPNRKIPNNNLQLPVHDLPSISTPTNANNMDLSPNYLTPSLPLAHTTPSGPS
SVPSRASLATESLGNVLPEENMASLGLHLAPVATNSAPASASTSGAVSFSNDMPGPSLAAPRRTNVPLSGVPRSNRPRNS
EATSDVSGIPLRGVIQKSIFVTRLNPEATAEDVRIFLCEKLQAPDNAISVHKFIFKQKRNISSFKIRITDSYFSKALDST
LWPVNTLVHEYLQKNQPRGSNSAVSKN
>CR1-9C_AMi_gag#LINE/CR1 525-1598[Crocodylidae]
MRRGAAMGVVTRSAARDPALVLPPARSSCGASTQTGPLEGLATPRSPVCGSCLAGALGPGQTRSPLTCPMCAQLEALEGQ
VRELQAEVSRLRGIRAVEEEIDGYFHSLQDHTPGGKASQVAVDAEGWKTVTSRSRRRRPRRRTTGTTPPVQLGNRYDALA
SLGESTATEATSTATTRQAERQPGSQRRRRRVIVVGDSLLRGTEGAICRPDPTVQEVCCLPGARIRDVAARLPDLIRPTD
YYPMVLIHVGMNDAAWSSPGRVMADYMALGDRLRGSGAQVVFSSVLPVSGHGQHHGNCIEEVNSRLRSWCHRAGFGFLDH
DPYFQDKTLLGRDGLHLSPKGKSLFSYRLADLLRRALN
>CR1-9B_AMi_pol#LINE/CR1 1044-3952 via tfasty with CR1-18_Crp_pol, 1 frameshift. [Crocodylidae]
LGSTGDGEPVVNENPGLESHKQGTGPNQVSTKGNTNHQGKGAPRAPIGGLKCLYTNARSMGNKQEELTLLLASTQYDLVG
LTETWWDSTHDWAVGIEGYRLYRRDRVGKKGGGVALYVKEQYTSSIIKAGVEEGNTEALWVRIQGGPGEKDLVVGVYYRP
PHQDDELDEVFSRQLSDAIQAREAVVMGDLNYPDICWEEQTAKTSRSWRFLHCVQDLHLTQVVSSPTRGSALLDLVLATG
DDLVGNLRVHSNLGDSDHHLVEFTIQRRVGKISSEAKVLDFRRANFSKLRRLVSEVAELKSIEQMGVQEGWRFLKGVILG
AQKESIPLRRKGGKGIKKPPWLNRELQERLGAKKEIYRQWKQGAATKEAYTSLARYCRESVRQAKAGLELRLATTIKDNK
KSFYRYIASKRKAQSNIGPLQDKSGQLVVDAGKKAELFNEFFASVFLSTDQDNSPTLSIDRCPKGTRPPKVSADLVKEHL
EGLDGYKSAGPDDLHPRVLKELASVIAEPLARLFEHSWCSGQVPEDWKRANVVPIFKKGRRDEPGNFRPVSLTSIPGKIL
EKIIKERICEGPAGETMLKGNQHGFVTGRSCLTNLIAFYDQVTHCLDTGAEADVIYLDFRKAFDTVSHPILIGKLAGCGV
DAYTVRWVANWLRDRTQRVVVDGSFSAWKEVGSGVPQGSVLGPVLFNIFISDLDEGVESTLSKFADDTKLWGKVNTPEGR
EQIQADLDRLDQWAERNRMQFNKDKCKVLHLGRRNPQHTYRLGDDLLSSSEAERDLGVIVDSKMNMSRQCNEAINKANRT
LSCISRCMTNRSREVMLPLYAALVRPQLEYCVQFWAPHFKRDTENLERVQRRATRMISGLRERPYEGRLRDLDLFSLHKR
RLRGDLVAAYKFIKGGQQGIGDALFTRAPQGVTRNNGCKLVESRFRLDIRKKFFTVRVARIWNGLPREVVLSPNLEVFKR
RLDSHLAGVI
>CR1-10_Crp_gag#LINE/CR1 404-1462[Crocodylidae]
MGVVTRSAARAPAPRLPPGPGTGEASTQVGPPACGGCLAWSLGPGGDTEAGASLTCPTCARIAALEGQVRELQAEVSRLR
GIRAMEDEIDGYFLSLQGPSPQAVTTQESAGGEWRTVTSRARRRRRRRVAASTVTPVQLGNRYVALAALEETGHEEEGRE
EATPSSSKPSSVPTEHHPVTQRKRRRVIVIGDSLLRGTEGPIRRTDPNVREVYCLPGAKIGDITGKITDLIRPSDYYPMV
LIHVGTNDAARSSPDQIMDDYRALGAKLRELGAQVVFSSLLPVSGGRQWQSACIREVNWRLRSWCRHAGFGFLDHDPHFR
SEGILGRDGLHLSPKGKSLFSYRLVDLLQRALN
>CR1-14_BF_pol#LINE/CR1 1491-4451  [Branchiostoma floridae]
MLPHVCFLLFFILMMSSNFLNAIYLNARSVKSVNQSRNKLVQLTNLLHLNAPDLLAITETWLTSDVHDLEVIPPEFVTYR
KDRHVTHNNKSGGGILLAVKSSICSSRRLDLEPQDEILVCEIRPPAMGKIAVILCYRPPSGNLSSFTHNLGSTLESVNKE
YNMCCVLGDFNLPRIDWANCVVLNEGREADFCNMINNYFLKQINHVPSNSTHNLLDLVFTDFPERFSTIRELPADFDTDH
TVLEFSLRCRIQTRQELPRKVYNFTRADWLGLSAHLESLRLSESVTHHHDIDSAWEAWSSAVQSAVDMFVPSRKLKVSTS
PPWIDGEVRNLQNKKRTAWKRAKRSDSPSHWEKFRKLRNKLKNLLSAKYNKYLVSLSSTLQESPKRFWAFVRAKSKSRSL
PTDVHLNGTVVQSAPDKANLFNDYFFSTFSAPDPNVIKPDIDVIVDERLCNLLLAVESVENVLVNLNTSKAVGPDNISAH
VLKGCAKTLAPSLTLLFNRSLSAGCVPSRWKDANVLPVHKKGDKENVANYRPVSLLSLVSKLMERCMYNQLIPILRGSLH
EFQHGFIAGRSTTTQLVETYHQVGSILDKGGQVDMLFLDFAKAFDSVSHTLLIHKLQMFGFGGNLLAWFTSYLTDRRQRV
VVEGCQSKWLPVTSGVPQGSILGPFLFLLFINDLPCAATQSTVALFADDSKCFREVSKLNDCVKLQNDITAMYNWSLSWK
MSFHPSKCKLIRLTRSKSPIVYSYHMSGTTITSVDSMPDLGVIVQSDLQWNRHILKMVARANSMTGFIKRTIGFNSSTDV
RKALYTTLVRSILEYCSPLWSPQSRKLMSLVEGVQRRATKFILGAHSNTLTYKERLSTLGLLPLTHRREVCDVMVFIKSK
PIVHKYVSFPSRPSRYLRSHMLTPIRVRTSAFSSSYIPRLVTIWNQLSPVLRNIGVQATEKSNILTFKRSLVRATFVRFD
TQFNIDVPCSWSTSCGCASCTALRLH
>CR1-10D_AMi_gag#LINE/CR1 431-1510[Crocodylidae]
MGVVTRSAARDPAPMLPPARGSSEASTQTEPLGGSAAPGPPACRGCLVGPRGPGGSGMAGSPLTCPTCARIEALEGQVRE
LQAEVSRLRGIRAIEDEIDGYFHSLQDRSNGGMATQEGPDTDGWKTVTSSSRRRRIRPRIAGTTPPVQLGNRFGALASLG
VSAATESAAMEAAPTTTTRQAARQQSNRRRRRRVIVVGDSLLRGTEGDICRPDPTAQEVCCLPGARIRDVTERIPRLVQP
TDYYPMLLIHVGTNDTARSNPDRVMSDYKALGAGLKGSGAQVVFSSVLPVAGHGPRRQECIDEVNRRLRRWCHQEGFGFY
DHGAHFKDRGLLGRDGIHLTRKGKSLFSARMADLLDRALN
>CR1-9_AG_gag#LINE/CR1 141-1304 Artifically cut from ORF 141-4136 to separate gag & pol.  [Anopheles gambiae]
MEGVCCDCSVPLESLECGIMCSFCDAVYHSACTKSPFTVIEEVKRTASLHWSCVGCSNALGNPHSKAVKTTGMQVGFQAA
LTAAVEVMKAALVPPVMHEIREGFASFAAAHQAPSEHFNVPPPDALPSGKRRRLFRDVVASTEAIVVDNAPLYPVNTDTD
NTHQRNRPSLPPIITGTDTTTTSIPTVSQLPRTNYMWLHLSRLAKTVTVDQVVSMVKSQLDTTDVIAFSLLKAGTTISSV
SSLTFKVRIIAALRDKALTAGSWPVGLGVREFISLPQRPSHHRPDLTNTNTPIPVRHSPMHPVQLSPDMNCTLISPAPQK
QLQPHQTPLKCTKLLFNTFFLSNNHTTVSSKGTVPLNLTSHLFTRNNNTSTTRSLTDDLAPTYTRIPL
>CR1-5_Crp_pol#LINE/CR1 1484-4387 [Crocodylidae]
LASPGDGATGRLEDTSQPRQVTYTRSTQVSSRGPDSPENRGVAHAPIQGLKCLYTNARSMGNKQEELALRIASSNPDIVG
LTETWWDSSHDWAVNIRGYRLYRRDRTGRKGGGVALYVKEQYTSSTSRMGSEEGQAEVLWVRIQGGRGERDLTVGVYYRP
PNQGEELDREFLGQLAEALKARDVVVMGDLNYPDICWEEQSARSDRSRRFLAEIQDLHLTQEVHSPTRGNALLDLVLATG
DDLVRGLQVLDHLGDSDHRLLEFTIQRRVSRACSKAVALDFKRANFNELRLVGEALGSWRVGELGAQDEWSFLKETILRA
QGVTIPTRSKGGKSAQKPPWLTKGIRECLIAKKEVYTQWKGGAITKEEYTSTARVCRGAVRKAKADTELGLASRIKDNKK
SFFKYIGRMKKAPGNVGPLQDMLGNLVVAPEEKADLFNNFFASIFLCRDRDSPTEIQDGLGRNSARPRVREDRVRELLEG
LDVFKSAGPDALHPRVLRELAGVIAGPLARLYEHSWCSGQVPDDWKRANVVPIFKKGKREDPGNYRPVSLTSILGKLFEK
IIKEHICDGPAAGMMLKGNQHGFIRGRSCQTNLIAFYDQVTKSLDAGVAVDVVFLDFRKAFDTVSHPILIKKLGDCGIDA
YTVRWIANWLRGRTQRVVVDGSFSTWREVGSGVPQGSVLGPALFNFFISDLDDGVKSSLFKFADDTKIWGEVGTLEGKDR
LQQDLDRLQGWANENRMGFNTDKCRVLHLGSRNQQHTYRLGNSLLESTVAERDLGVIIDSKMNMGRQCEDTVSRANRTLS
CIHRCITSRAKEVILPLYATLVRPQLEYCVQFWAPHFRRDVDSIERVQRRATRMIRGQQGRPYEERLRDLNLFSLHKRRL
RGDLVAIYKLTRGDQQGLGETLFPRAPPGVTRNNGHKLLESRFRLDIRRHYFTVRAARIWNQLPREVVMAPTLGVFKRRL
DVYLAGVI
>CR1-5_Crp_gag#LINE/CR1 417-1484 [Crocodylidae]
MVRTRSAAARGPAPVAPPALGSSEASTQTELMVGSAAPCPPVCGGGPAGSQRPVGGGGSGGSLACPSCARLRALEEQVRE
LQAEVSRLRGIRAAEDEIDSYFRSLQDQSSSVQTPQETRSTEEWQKVPTRTRAARASVVEAPQVQLGNRYEALAALEEKD
EGDASSGDGATPRMTQTAQRGSTRRKKRRVLIIGDSILRGTEGPICRPDPMAREVCYMPGARIQDITERIPAYIRPSDQY
PMVLIHVGTNDVARGNPDHIMKDFEALGAKLKETGAQVVFSSILLVSRRGRRHEACIGEVNQWLRSWCRQAGLGFLDNDP
CFRAGDLLGRDGLHLSPKGKRVFSFRLADLVQRALN
>CR1-5_DRh_gag#LINE/CR1 596-1486  [Drosophila rhopaloa]
MALVCSKKNCTLASSTKDPFIFCWLCDSMMHVKCAGFTGRVKDFIDLNSGLMWSCGSCKEMVVEMSGFMKQTRDSXLNIS
GAFKQLNEGFNSVCAQFNNKKLLTESPKRKKASLTAVNMIVESTPNPNLVAAVSVDTGVNEPTVPMDTASSGGVPVSRIK
STVLAKSKNSLPTVPIGTVGTVPGSQPSEVQTAAWGRKKLSVVSQRKQLFVSRFTPDTTSEDVLEFIREKFPSEDIAVEQ
FRFSYARRISSFKIFAPPDVFNVLLSEXFWLNDDLVIKEFVPNKPRTNNRPSTVPKN
>CR1-6F_AMi_pol#LINE/CR1 1429-4155[Crocodylidae]
LASSGEGAARRGRDVSPTSKATRETETQVSNNGHSSPGSRGEVRALSGGLTCLYTNARSMGGKQEELCLLIAGKNPDLVG
LTETWWDPTHDWAVGIQGYTLYRRDRTGRKGGGVALYVKEQLTSSRISFGAEEGQAEALWVKLQGGQGERDLTVGVYYRP
PCQGVELDQDFSVQLMEAVGSRDVVVMGDLNYPDICWEEQSARSDRSRRFLAEIQDLHLIQEVHSPTRGDALLDLVLATG
DDLVRGLQVLDHLGDSDHRLLEFTIQRRVLRAYTKTKAPDFRRANFNELRRLVGEALRAQKVEDMGIHEGWSYLKGTILQ
AQSVTVPERKKGGKSALKPPWLSKGIQECLRAKREAYTRWKRGAITKEEYSSLARECRRAIRKAKAGVELRLATRIKDNK
KSFFKYIGSKKRALGNVGPLLDSNGNLVATPDEKAEIFNKFFASVFLDRDQDSSPTTGRGNLGDSTARPRVCAEVVRDLL
EGLDVFKSAGPDALHPRVLRELAGVIAVPLARLYERSWSTGQVPGDWKLANVVPIYKKGRKEDPGNYRPISLTSVLGKIL
EKIIKDHICEGPAGEIMPRGNQHGFIKGRSCQTNLMAFYDQVTKSLDDGVTVDVVFLDFKKAFDTVSHPILINKLSDCGI
DAYTVGWVKNWLMGRTQRVVVDGSYSTWRDVNSGVPQGSVLGPTLFNIFISDLDEGVENTLSKFADDTKMWGEVGTLEGR
ERLQLDLDRLQKWVDGNRMGFNVDKCRVLHLGRRNPQHTYKLGSSPLXSTEAERDLGVIIDSKMNMSRQCQTAASKANHT
LSCIQRCISSQSREVILPLYATLVRPQLEYCVQFWAPHFKKDVACLERVQRRATRLVGGQQGRPYEERLRDLNLFSLSKR
RLRGDLVVWWLPTNSLGEISSK
>CR1-5_NV_pol#LINE/CR1 78-3572 [Nematostella vectensis]
MAMALQLPITILAIVLNVLDSSVSEVCSSEAPFAIPGVQGNLEFKASSFKVNQPRSSAFAFINSLSRQRHGRMLGPVLND
STSPRISLILIIMANDCSTMNPGPVKDPCGICQKPTRSNQRAIQCDECDMWYHTKCIAMTAQSYDRLGSDSQLAWLCNKC
LFPNFSTTFLLNEMDLCHENRFESLSSDSTISSDPGSPLFTSSPSRFHDPQGNRVKITRRKLKILSLNCNGLKSPAKKSQ
FQSLVALHDPDVILGCESKINAIIPTYSIFPENYEVYRRDRTASGGGVFIAVRNDLTAVEERGLDVDGAEMITASIHLAK
RKKLFLTSFYHPPTDQEGLGLLDDYLCKLFTKYQQCPNAIIGGDFNCSGIEWSSGEAVLTPPVHSWDLALIALAEKYGLS
QHVKSPTRYDSFLDLAFSSKPGLVNACHVTSGLSDHSAVLFEVDLAPKYIPKPPRKIYLYHKADMAALKEHIASFHRDYA
ASHMERSVEENWNAISTCISDAMERFIPSKTSKTKRHLPWIGAPIKKLMRKRDRAFKKSKRTGKEKDHVNYKRLRNIVSN
SIKESHNNYVSEIMKGIDLESDEPRPNGVKRAWSYLKLLRSESLGIPTLFWEGRVCANDKCKAEALRAQYDSVFTQEDNL
NVPTLGASPHQDIKDISFSVNGVRVQLDNIRVDKACGPDAVPARVLKEAATELAPILTLLFEQSMKDGVLPTVWKDANIS
AIYKKGLRSDPQNYRPVSLTSLVSKLMEHIVSKHIMCHLSANNIITQLQHGFLKGLSCSTQLISVIHDWSSVLNDHGQVD
VVFLDFAKAFDSVPHERLLIKAEFYGIRGRLLLWLRHFLTNRRQRVVVNGASSTWSPVLSGVPQGTVLGPILFLLFINDL
PSGIKSHVKLFADDSVLYRPIKSLDDHHALQQDLHHLERWAEQWQMKFAPKKCYVMTITLKRDKSQFPYHLCGTTLEGVS
VQKYLGVHISTSLNWSKHTEEVKKKANAVLGILQRNLSSCPAAVKEQAYKALVRPLVEYGTEAWSPHTKKDIQKVESVQR
RAARFVCNDYGRHSSVTNMLTHLGWHQLELRRTVFDSVMFYKIHHGLVKIDFPSDVIRKPGSYATRSSVRNTCQLTLPPP
SINQFKYSFFSRTIPVWNSLPQQMLDLSSVDEFKIAVTGELARQ
>Mogwai1_Ei_tp#DNA/TcMar-Mogwai 240-2329 via tfasty with 31202999_AG and, recursively, with Mogwai2_EI, 2 frameshifts and 1 stopcodon. [Entamoeba invadens]
MKKFDWAFPLTMECRKGLSMDLQLNFSFGAQATPFNICKVPPKPTFFETEPEITNETKYFENPNEKDPIFIRNAFLASKH
IDQHFEMYNARMKEISKQYYEENDIHEVLFPRQIVPSTQLNLKRKKNYNERKNDLYTQIYIYYSDCKNYNRTAKQFKLPP
STIHNIIERVKNGVSLTGNxKGRKSGHNYKFDYNTITMILEEISANKHTTLKLITKHVNEKKRDEWMEAIARYESYSMRD
EHEIKEMLKQKKVSLSGVHRILKRLGVTLKLVKKEQFNRNVKVRIEQRKMYADHIEYLNYFQFVYAYIDEVGVNFNHTRR
QGYSFIGQCCSVESKNIREPNLTTFAMVVPGKNLVFRISSKSSNVIFINSVKEVFIPQLIKWYGPVFIHFVIDNASIHKK
DMILVCQEYxIYVTYLVPYSPQLNAIEKCFSAMKSYLAEILSDNESFKKALNFMKCYEYHDLILKDVRMTNINIKMFSSF
VAASLLWVSSQSTYNFHIKTFEWVKRAKEGFRFENDDNLNNKIVRIEVPIPDEEFVFSYNDNNSQSTVNFISRNDVLHVL
TYDPFTIKNEKSFTNCERFFQEKRQEGELYRYNEGKNNYQFEHKIIPDISDTFAIQENNIMEECDYYNEEKLKSECSKSE
YMFSQISTIKCCDDIDKNTSPKLILPREIDESTIDLIHQKINVMMNANVVLGLKFN
>Harbinger-1_TV_tp#DNA/PIF-Harbinger 1582-3684 Past pos 2626 no similarities to otherHarbinger TPs. [Trichomonas vaginalis]
MFISLSLMEYKDDSEFLDDIQKSKTRSKEIVRMQMHLAYLDESEPASEDENQAPANAEEFKVVRKFSLQKFLEAHPILNV
KDLCNFSLDQLLYLVDVVREHEFSSRRGRKNGCDPLDALFLTLTYYCTYLPLQKMSGIVSLKQSYLSKIINKTTNRMFPI
FIAEFIPKQYSPCDKEFDNFPTCVAAVDSSTIPFTVPLDLAERKSSWDAKNHCNGMKVQVLVNPLGQVIHMNTSFLASVH
DKKVFDLSGASDFLHVQRGVESVALGLLADRGYIGIQKYHPTAVIMQRGDDEEVTKRNNAIAHDRQIVERRFARDKSNWS
VLAIGYRGEKGNLPLIVQGLFALDNYHIDSTPLSEKDNCDFPCTPKDEKEAAATPEPNGSGSPMPKPRCVPKDLYLQTPE
TPMKIPSPLAGYEKIDKILVKRTQNAIYNIETKMSIPGLHNEGATCHVNAVLQVLFYVNTFRKDVMEHLGDVEYTPVKAL
AEIYDQMLHYRHKEYTISCSQFITTLGKQYFQQQDADDTFQKIVHDVTESANKPDIAVTFQYQTETPDESFYSVSLHIPL
GAAGIDQGIKQMCTDDSHINEISTFLWVDVQRNWSDPNVFFDKFEIKKNYKTQLSDGTYVFKIHSIIAYHQGHFVAFVNK
GRVWFMLDDEITYIVPDGLIKGLQGGDVGSDLWSYLGGVKWLAKCVIYRKHKFYGAGDDDD
>Harbinger-1_BF_tp#DNA/PIF-Harbinger 467-2152 Via genewise with Harbinger-5_BF_tp, 1 intron (784:1167) [Branchiostoma floridae]
MPLHLNRHVPLAQLRLRLATARHRFILVLAAWVAEEERQAERHRQRRRWWVRPWLTRRPMLGFYDTLMNELMREHRCDFK
SFVRMEPQMFYDLLMRVGPSIEKSRNVRPALPAALKLAITLRFLATGNSYQSLEFAFRVAHNTISQFIPQVCKAITTEYG
DEVFKTPSTPDEWRQVAQGFQKRWQFPHVCGAIDGKHVRIRKPKKSGSVYFNYKGFFSIVILALADHNYKFLWANVGSPG
SNSDCGIFNNCSLEPSLSGGTIGFPDADPITNDDRDTGYFIIGDDAFPLRTYILKPYAQRYLTIEERIFNYRTSRARRVV
ENAFGIMAMRFRCLLTTLSVAPETATRITEACLTLHNLMRMRYPGLQNMDLDYEDEHHQLMPGSWRNEAVLQEVEDEGRG
PRATADGKKLRAYFRKYFNSNAGSVPWQ
>Harbinger-3_VV_p2#DNA/PIF-Harbinger 543-884 [Vitis vinifera]
MSQNVEISRANWTDPIQRKHFIDLCLQEANKGFRSGGGLKSSAWPRIAEELEKLLGKRYTSKQLKNGWDYMKRQYLIWSK
MMTMTGHGYNSVTKTFDWPAEKWEEYLQVVFLWI
>MtPH-A6-1-Ia_p2#DNA/PIF-Harbinger 2404-3444 [Medicago truncatula]
MASKKQIPTNNGNSGTLSWNRAMDDALVEAFMQELENGNKVNGNFTTTTYNNITAELVKLFGDKIDKLKVQNRWKTLKRN
FSEYYEIFKGGMSGFSWIETTQLWDAEEEVWKALIEVNFVNLEFCNILLINSFINCLKPTFQSKPKAASWRFVPFPNYEK
MLKLHGPNRADGDESETFKETRKRGASITEEDFNETIQDIDGQVAQNEVNLESFVPDYDFTVPETQSPDPSPIASGGKRK
KLKVVKNKEAKNEIIELKESMNVVAEALREGNAAIREGNEITKERHKHELPPISGEETWNLIKECGCDKDSLPKIYCAVM
KDKDKLRMILQCPPEAHKAVIMQMVSG
>Harbinger-4_BF_tp#DNA/PIF-Harbinger  575-1902 via tfasty with Harbinger-5_BF_tp, 2 frameshifts. [Branchiostoma floridae]
MADPGQDRRHLMIAVIQHQHDIMNLQLHLLRQRQRERRRRQARQRTVWVRPWMGEEKSWGYIVSIGDISLMAELRNEDPT
AFHIFMRMPIAMYDELLERVTGRLTKKATFMRDPLDPGLKLALTIQHLVSGNTYASMKFSWRVPKCTISLVVREVCEAII
ATYLDELMVCPTYTPNQWRQIADRFYQKWNFPHTCGAIDGKHVACQGPWNSGSMYYNYKGFYSISLMALVDADYRFIWAD
IGGLGSASDAQVFSQVFNASELKECIEDGTIGFPDPEPLPNDTQDVPFFIIGDDAFSLRTTMMKPYSGRGLAREERIFNY
RVSRARRVAENAFGILARRFRVLLTTMQHHPSTVKLIVTTCVLLHNLMRSRYPALQDVELDQAEDVQHEFVPGAWRDGHN
LQDTINVTGPNRASREGKMQRKLLKHWVNSEAGSVPWQDGMI
>Harbinger3_DR_tp#DNA/PIF-Harbinger 362-1480 Genewised with Harbinger-5_XT_tp, 1 intron (1038:1118) [Danio]
MAMAVLALLEDIVNGRIRRERVFRDHGDFLAHDDDWLISRFRFPRAILLDLCAELGPLLERETARSHALPVPLQVLTTLG
RIRRERVFRDHGDFLAHDDDWLISRFRFPRAILLDLCAELGPLLERETARSHALPVPLQVLTTLGFLATGSFQRELADRS
GLSQSSLSRAMPAVWDGIIRMSSRYIRFPYHAVDQPNIKAQFAAIAGFPNVIGAIDCTHIAIKAPSEDEFAYVNRKHFHS
INVQIICDAQMRLTNIVARWPGSTHDSFILTNSMVGMRLQGGRVRDGWLLGDRGYPLKTWLLTPLNNPQTDQERRYNDAH
SHTRSVVERAIGQLKCRWRCLDKSGGVLLYRPNKVCRIVLACGVLHNVAHRHGIPNGEPVAPPDDPDPGPVCIQPNQQAI
QARQRVVAAI
>P_Dma_tp#DNA/P gi|1085872|pir||S52159 transposase homolog - fruit fly [Drosophila madeirensis]
MKWCSLCRKVANDVKLVHVPKGLEKRKLWEQCLDCSLTVNSKICDSHFDASQWKSSTIKGQIFKKRRLXADAVPQGDPAA
KLVKLGFANSSTQTEDAFINHSARVEHESLTGRIRLMQKKMDSLREQLEVYKDLEISLRTIFTETQIKILKNKGKRAVFN
ATDMSAAICLHTAGPPAYYHLYRKGFPLPSRATLXRWLXDVNISTGTLDVVIDLMENEEIPEVDKLCVLSFDEMKVAAAF
EHDSSADVDYEPSTYVQLAIARGLNKSWEQAVXFDFSTLMDADTLHSIINKLHKRGYPVVAIVSDFAAGNQTLWTELGIS
ERKNWFTHPADEDLKIFVFSDTPHLIKLVRDQYVESGLIINGKRLTKSTXQXTISHCAKXDVSMSFNITDNHLNIXPLAK
QNXKLATQLFSNTTGSFIRRCNALGYNVQNASETADLFKIINDWFAVFNSKSSTSNSIEPTQPYGKQIEIQRGILAKMSE
IMSSEILGVGAHRLPFQKGILVNNASLEGLYCYLSEKYEMQYIFTXRLSQDIVENFFIAMRPKGEQFEHPTPLQFKFMLR
KYISALTKLNKPIDK
>P-36_HMa_tp#DNA/P 362-2836 [Hydra magnipapillata]
YDVNNSTKLIRFNLLFRCKLWVRNCRRQDLDTKSCEELNLNYTICSEHFDSSQYYLANNGSKRALVTAVPTIFNFPNQPS
TLNLKRKQPTNRLHLQDKIQKKEINDKVKLNKINSVENSSTNNVTVKTTFKNKYLSSQVKICRLKKKLKNLKIKHDMLKK
CDGSIEHIINLSKKYLTNTQLQFFESQLRMNNRIKQGKRWTIEDKILALRIMYRSPQAFKMFRKVFSLPSRSTILMFLEK
SFGTLESGFSNKVIALLKMRVNTMKKLERNCSLVFDEMSLKQHLDYDKNNDKIIGIQSNGKPVNQVLVLMVRGLSTKWKQ
PIAYFYSNTTMCSTNLAKIVNNAMIHLHKIGLAVRCLVCDQSSSNIRALKFLGFSLLNQQISHPTTQAKVYIIFDPPHLI
KNVRNNLIKHDILSDGKIISWKHLEELYNLDKVNAVRLVPKLTDRHLDPGSLLAMRVKLATQIFSSQVATALTEYASAKL
LPENVLSTAFFIKNMDILFDILNSRKLKADKSTRSALTLNSSFIQKLEDLRVWIKGWHFSGARSQKSISSHWGLDVTISN
ILCLANELLHEDFFYVCTAQFNQDCLENFFALIRSKGGWNDRPTAMQFKSAYKNVLVLLSIEQSNSNSNCLPESDFSAAV
TIDSITNIVFENQISANEQLIFKHPTALCKKKQKPYTLQTVSTDSVSQSIKQVLKLIADDLIKKVQVCQKCVQVLSSVAP
CESNLFNSDSFLQNLLHEMETVFITQMKLILTKKNIIQQIIKVIKNDCNFTFLYDEHIDHAFHLEESLIRHYVYMRISYY
IRFYNRDLAPRNKTCKNKLARIIHA
>ATIS112A_p2#DNA/PIF-Harbinger join(834..922,1262..1444,1498..2188)  [Arabidopsis]
VIWRICNKVCCFLIEYNPNAKVVGLRSNASFINLLNSQDDSHILPPNPYECFELGSANVPVYSTEWSDDDPSEDEAPIAG
KKGRKGRKGRNGWLNTSKDPVVGNEQKGAAFWERIAAYYNSSPKLKGVEKRGHICCKQRWSKVNDVVNKFVGSYLAASKQ
QTSGQNDDDVVSLAHQIFSKDYGCKFTCEHAWRELRYDQKWIAQSTHGKAKRRKCEDDSEPVGLEDKEARPIGVKAAKAA
AKAKGKGKLSPDEGEETNALKEIKSIWEIKEKDHAAKEKLIIIKEKKNRTKLLERLLGKTEPLSDIEIELKNKLINELLA
>Harbinger1_PTr_p2#DNA/PIF-Harbinger 2732-3232_R [Populus trichocarpa]
MDSNFPSSFTNFLMSESEDILSQPSDSNQLIDDLTYSNLNVHTIKKSQRSKNFSPEEDCLLVSAWLNTSKDPITGVEQQT
KQFWARVHAYFVENGGNLNNRSQISISSRWQEINREVGKFVGFVTQIENRQQSGMTEESRVILIFISMLNCLTHILTLFN
FSNFLPD
>HARB-2_Mad_p2#DNA/PIF-Harbinger 3213-3674_R [Malus x domestica]
MILLFYKYLLIIFYLTPQFHIFSTTFNHIPIFLSKFQSNFFSNKMTTDAGTNWTLLEDVALCTSWVEVTHDSLTGNEMQL
REMWSLIHTNYLEKMGGKRTKESMSSRWKLLSQSFSTWRDALAQASSNLRSGENLADQVTIYYLFVCTIPKFTL
>MtPH-A6-4-Ia_tp#DNA/PIF-Harbinger 687-1993 via genewise with MtPH-A6-2-Ia_tp, 1 intron (1438:1520) [Medicago truncatula]
MDHEMARQTIMELIRWRARLRMTLVHVICLVVCYYRIKIHSQSRIVDRSLTLEKDRVRNKIMNIVVTSEGRKIIRMSPKA
FLDLCSILQQEGGLLPTQRVTVEEQVAKTLYLLTHNVRNREIQFWFRRSGETTSRHFHRVLRSIIEIGRTYLKQPDGSRI
PIEILGNHRFYPYFKDCVGAIDCTHVRVKVPLAEASRYRGRKSFPTQNVLVACSFDLKFTYVLPGWEGTASDSRILKHAL
QRRNGLKIPRGKFYILDAGFMLRKGLITPFRSTRYHLKEFSARNPPRTAQELFNLRHSSLRNVVERAFGIVKKRFPIISS
GAEATYGINTQNYIILACCILHNFLMGVDPDEDLIAEVDEEIANQSASQTGHGHIEVDEDEENSDLGQNFRNSILGAMWT
NYLSYHSR
>25777746_HSgene#DNA/PiggyBac gi|25777746|ref|NP_689808.2| PiggyBac transposable element derived 4 [Homo sapiens]
MSNPRKRSIPMRDSNTGLEQLLAEDSFDESDFSEIDDSDNFSDSALEADKIRPLSHLESDGKSSTSSDSGRSMKWSARAM
IPRQRYDFTGTPGRKVDVSDITDPLQYFELFFTEELVSKITRETNAQAALLASKPPGPKGFSRMDKWKDTDNDELKVFFA
VMLLQGIVQKPELEMFWSTRPLLDTPYLRQIMTGERFLLLFRCLHFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTV
YTPNRNIAVDESLMLFKGPLAMKQYLPTKRVRFGLKLYVLCESQSGYVWNALVHTGPGMNLKDSADGLKSSRIVLTLVND
LLGQGYCVFLDNFNISPMLFRELHQNRTDAVGTARLNRKQIPNDLKKRIAKGTTVARFCGELMALKWCDGKEVTMLSTFH
NDTVIEVNNRNGKKTKRPRVIVDYNENMGAVDSADQMLTSYPSERKRHKVWYKKFFHHLLHITVLNSYILFKEDNPEHTM
SHINFRLALIERMLEKHHKPGQQHLRGRPCSDDVTPLRLSGRHFPKSIPATSGKQNPTGRCKICCSQYDKDGKRIRKETR
YFCAECDVPLCVVPCFEIYHT
>ISL2EU-6_HM_ex#DNA/PIF-ISL2EU 86-2029 via tfasty with ISL2EU-2_HM_ex, 1 stopcodon. [Hydra magnipapillata]
MSYNKYEDFLNLSSKKLINYLSIRGLKITGKKVELVARAFAAMELNLDIICSAEDQYKRLQIDYEHLLQKHGIPDPNGVE
LEKRFDNLSKWPVVTMGNIFAFILKKKEFNTDYIGKYKDQKAFSYFDSGFVGPIFIYEHYLKPKEKVIFLYCTVTASQAL
RESKTLWIVIKQGDEKGSDILTGWCSCMAGSYETCNHVIACLYKIEYANTKGWCNPACTETACQWNLGTRKDVEPKRISD
LIISKKLGTKSSLSNDCEENRMKNLNNFDPRIISHRTISSNHISNFIRDMQLVNEEAVLFKSIESLSTTNEEHYNYAFVK
TIALNVLKAYSQFSETELIQIFIEKLNMSLKTIENVEKATRGQSEVLLWFEIRSGRLTASKHHEVFTKVNTILKAQGSIK
PKTTPLVSKIIYYDDVSSASMKWGVxHEDIAFKSFYAQEISKHQDFRAEKCGIFLSKFKCYLAASPDGIVFCKCHGKSIL
EIKCPYSLRDKKISESVNDCEFLTVNNGKITLMENHKYYTQVNSQMAITEIKECFFVVWTTQETFVQKVKFNQDHWNKVS
TNLDIFYKTFVCPALLNFKPLIFCCKCDNVLLEKCEIDTNKESYLKSIQCNLCEGWLHFKCEGLTDTENENNTEWICSYC
LVSLPGLE
>47209776_TN#DNA/PiggyBac gi|47209776|emb|CAF95493.1| unnamed protein product [Tetraodon nigroviridis]
SEGTQHLVLGHDVPLTLFRHFPTTNLKIWSHLRRQAEEAKGRLEDGGAAELCQRSSEAVRLPIQYFRDFRDLHCSQLNPN
RALRLDRTELEQFLGTVVYMSIFLFPRSRMYWSGASRVQQVAQVMSRDRWEEIKQFIHFCDNMAPNTDDRLVIDALLPKF
QALPQDQMLCVGEQMVPFRDRSAPRRHAPQKPHKWAYKLFVLCDTKGLVHSFDIFTGEVDPAPGQPDIGASGNVVLKLAQ
VVRADVNHLLYFDSRFASLDLLVALANRGIPALGTVQPQGLRGCSFSADAEMKKKGGGAFEEQQAVVDNVGIRAVKWFHN
RGVVVASTFASAQPVSTIERHTPITASTSGPKSTTSGCSSSSSSLANRWLLYRRDCDSLGVPSKKQKDLLAFRASIAQAL
CMEGKDLRSKRRGRLSRDVDQQFDLKKRRGPAKAVPPPEVRSDAVGHWPLVEGGRQRCKLPNCKGQTVYRCATSICA
>PiggyBac3_Api#DNA/PiggyBac 187894268 663-2276 [Acyrthosiphon pisum]
GIEHLQNNSESEASITDATATISRQQIQSDQVSSPDVSINIQQTNQNVAIWGNINTTINYSNFTYNSTRETVGINPDIYE
TMYGGSPWEFLSLFLDTEVFHLIVTETNRYAGQLLSTPLRRHSRLNAWKETNAAEIKRFLGIIMWMGLEHLPTIQNYWAK
KGIYSSKISKYMKVKRFELLLRTFHVSNNHECPPGDRLFKVRGLVDLLVSKCKRAYIPEESLCIDESVIPFIGRLSFRQY
LKNKRHRYGVKIFKLCVHDGFTVDFRIYAGKEAVQGLEVSTKVVMELTHEYLNFGRTIYTDNWYTSVNLAHKLLEQNTHL
VGTLRANRKQNPKDVVQKKLKKGQVIAQQSDRGIVVLKWKDKRDVLMLSTKHSDTMIETINKRGQTTKKQEIVIDYNKGK
ALVDICDQRSSYYSPLRKSMKWYRKVAIEIILSTSVLNAMCLYNKVNKTKIGITEFKEMLVKDMCGDYEETDKEEVEHKL
SKSGKRTRCVKCYDEMVKQGGRKHAQRITKQSNYWCAACHKVYCIECFFDDHRVRAK
>AvPB2_tp#DNA/PiggyBac 458-2181 (1 frameshift) [Adineta vaga]
MNXRIEEDSESDDVNDEQSGSEIENDESQTTDADDEIDLEDLKVSGDSTRKSSYTSKSGMIWSSISSTSTKTKXFSGNIE
KSGPTKLTENIASIEDAFICLMSEKILQKILIYSNMEYERNTKLDEKEEITMLELKASIGLLLLAGLLGRSKSDLHSLWK
TSPLESPIFKATISKSRFDKIIACLRFDDKSTREERKKADKFAAIREIWLDFQDKLKTCYTPGLNITIDEQLLGFRGKCP
FRQFIPTKPDKYGLKFWLCVDAESYYVLNAFPYIGRQPGQEKQAHVGESVVLELLKPFYGSNRNVTMDNFFTSVPLAKNL
QTKNLTLIGTLRKNKPEIPIEFLSSKIREIGSSLFGFEDNLTLVSFVPKKNKAVLLLSSXHHDNHVDNKTGKPVIILDYN
KTKGAVDTVDQMCHKYTVINIFNFLSFNFVICRVKRGTKRWPLCIFYGMIDMAALNAFILWKSKNPVWNENKRYQRRLFL
EELGLSLVTPLLDFRSKTSNFLHKDIQNALLIVGHPVSKRDSQKSDEDSAQSKRKRCSICETSKDRKTSNKCYNCSAFVC
SEHCVKQIFCINCSK
>ISL2EU-4_HM_tp#DNA/PIF-ISL2EU 116-2559 Via genewise with IS4EU-1_NV_tp (3 introns; perhaps incorrectly spliced)  [Hydra magnipapillata]
MPRSCCVVGCTNNCKKNNELKFYRIPKNEAVRRKWLNAINRAADSTSSKQWSPTSSNVYVCSAHFITGKRELFEKHPDSV
PSIFDTGMKGSPQRNTNNNKINRVSRRINRQKISVPACKKLKLCAQSISEDVDFVIEKRSFSNEGKSAPVNINVQQSSTN
SSLKSEMSYTEKSEIDIEIPLKTSERQQLYSEINNLRLERDLFMSKWISLKDSNCSLGINKIRANPDKCNMLTGLNLPVL
EKLLSFLCKGTPESSLKRFNTEDKIVFCLVKLRHNINFDMLSFMFDIKKTTALDNFWKWIDIMYVKLKYLIKMQDRDHIY
ETIPPVFKNKFPRLTSIIDCFEVFVESPSSLMARALFYSQYKKHCTIKCLISCTPNGTINFISKCYGGRASDNQITRESE
FASSKYHMPGDQILSDRGFTLQDDFAAGSCSILINPAFTKDKAQLSASEVEKSRKISSVRIHIERVIGLLKNRYTILQGV
LPLRTVKNITDEATSVTLSNCDKIVTVCAALTNLGEGIV
>IS4EU-1_AA_ex#DNA/PIF-ISL2EU 4195-2051 (4 introns) [Aedes aegypti]
MESNHEIDTCEVPVQLSEVFHFAAGGSRLVQEGERVFNAAHLLIVGAEQVHQDGVSIFATCLQSSSPSSEPHVIKIRTKQ
AFPQWTFTCTCKAGKGKCKHQMAVLYHLLRCATVLILTVTDLKQKWGKIAAKTATDLYKATRLMDLCASMKSVENLSDST
TIEHSLNESTIEESNERSKSSKYRQYTATGEERSQILHHFVSCFPNSALGYEICGRPSIQAETMNHESEIENCVLQMEIS
TSKLSLSSSNSIISFQDFSPESIVKRYVEKLFEPEFDLKYKYFIGPLEANLLTFYEIKICVSAKESTDICMRTISQNSEE
CKEERSMRITASNAYSLFTYYVTEEKKSKDWKRKIVKLMFPENLKTPAIDHGRRCEHKAIESYEIMTGVSVNRCGFVIPP
HIPWIGCSPDGIIVEERKINKVKFPFAGKTSTISEVLKDLPYLSKSNQLRKRHIYYGQVQINMFVLKCEKADFIIYSEFE
DRCYVISVDLDEEYVYGLLDTLKEVYFNIYLKILYTLKN
>MtPH-D-Ia_p2#DNA/PIF-Harbinger 196-591 [Medicago truncatula]
MASKESLPNSSENLGKAKWDTFSTKMLLDICMVEIRKCGKPGIGFRNKKWEEIRDEYNKRANKIYTQKQLKNRMDTLRGE
WTIWKQLLGKETGLGWNHQIGNIDVDSAWWDAKIRVSTMNFNFYSLKVSRRI
>ISL2EU-1_ADi_ex#DNA/PIF-ISL2EU 2094-3770 #reverseORF  [Acropora digitifera]
MRQIFPSAANSDETESDIEEFKYDSTMRRISARGRSTDLRNLPEMNFVQLYDYLVVSTRKYRHIVLKGTNYKKLKSYQFF
FEGNVKKLECKNHDNKRYVRANVLPSMKKTPYRVVIEFSPTCDVLRAACTCPAGLGLQGKGKCNHVGGVLFAIEDFSRRG
LQQNPEPLTCTSRLSVWIVPRNQSVAAKPLDKVLIRKIRFGKKNIRTQAKIIKFDPRAPQQRNRDPERFKKLCSELQNCL
PSSSFFLFHDVKSKCSGTDSAGSENVTEDQNTIPFTDSYDIATNRFKDMVDEHVSSWTISEEEIKETEMSTRGQSQNPTW
FEKRKSILAASNFGKAAKTKVEPSNKLKAMLYSNFTTEAVQYGIESEEKAVNLYLREMQQQRFNLKVDEVGLLVSMKKPY
LGASLDRIVTNMDQNSKWGMEIKSPFSKAGMDVDEACKSKTFCLEKIPDGTIRLKRNHDYYIQVQGQLYCSNLDLKGIIF
VVYFGEEKPLFIENIFFDASCWIEYHPKIDYFFKKAFFPEMLTRRVQRGKLLYLHGGWIPYGHYSRSLSGLKLTFQRAH
>ISL2EU-3_HM_ex#DNA/PIF-ISL2EU 1650-3353 R  [Hydra magnipapillata]
MSAINKVDSYEISLEHDSNXIDIDPCFFKNISIATQPVFREISSQFNQIDAEEVVQEQISSWSRCLSLLPNISQEKIHKY
LIIDDSSTDFGARGASKHKISGYQLFKENFVKNLVVKPNVNIEINSFLIRANVSASMKKNQYLIYVHLCQKEGDILYAKC
NCKAGMGGCCKHVAAVLFQLNEYKQLNLNSVPFDKTCTEVLQQWHVPAEGKNSEPIKLSKVSFEKSDLEKDLNNSRKRPF
VSGNRNFCATPIFAHNPSDEKIKKLSDSLYNLGEGIAFANLLKGNNYHSTSYYETSISEYQLKVKELDLNSDIIFNLVDT
IINGFEVEFSDSFEFDETQLMFISKYLVLSKEKIKTLERATLSQSTSLWLEERKKRLTSSNFGFVINRQKSIFPASILNR
ILKNNKNNFCNKACNWGKINENTAIKKYENIKNVSVTRCGFIINPKWPWLGTSPDGIVLVNEKIRAIEIKCPYSKKDLTI
AEACLDKTFFLAVVDGKTMLKQNHVYFYQCQGVMALLEIKELDFIVYTEKDVFIESIKFLKEQWEKTTLPKLTKFYFEFM
QENIFAV
>ISL2EU-2_ADi_tp#DNA/PIF-ISL2EU 147-1658  [Acropora digitifera]
MPKSVNCCVPGCTNNFRNNPGIKYYRIPKDEKVRRRYEILIRNATLKVKSDNTRICEQHFEGGIKKSRYDLPSIFPWSKP
ASTRRVLKRFPSEEVKKSSKKSRRALRPSSSAADSRTESELNIGLHLATNEQDGHTDFCGPVRDKEAEESQTNEMQTHVE
FGRQTYEPQKVESGTQTLEPQAKVEFGAQTELINLRFDIDQYKEKDSDIAFYTGFPNYKTLMLCYDIVKDSAKNISFGSH
ERRNFDCPAVLQPGRPRALTTFQEFILVLMRLRLGLFEKDLAHRFRISESTVSIIFRTWIRFLRLELQELILIPPRDVLQ
EHMPKIFKEFYPNTVVVIDCTEVQMERPSALDNQSSCYSTYKSRPTMKSLVGITPSGVVGFVSELYPGSTTDKEITVKSG
FLKMLEQGDEVMADKGFLIQDELAGVGATLTIPVFLKGKQQFSKEEVEKNKKVASLRVHVERCMERIKNWHILDRPIPVC
LAGVASDIFIVIAALTNFHPPLIS
>Vandal1_p2#DNA/MuLE-MuDR 7201-7896 reverseORF [Arabidopsis]
MVNXTIPDDLLAKIAKTVAHKCWWDLQPLLRSGRRGRDVVYRPDVLKGANIFSMCEDPDDYQVDGSHHPSGPQEEGRHRA
FFKRCVDAGNPTAMYFEALRVLTHERDIKGAINLLRPHVPSQAHATLACAILYIIDGNDYMGAMFLNLFGRNHYPLGTEE
TRDLCEEFLEDLKKFRPPYNNTYGSTFSYPNSHGIKTPDCALLCYIVSGPFKNVCNCCYLWWCARRVSQML
>SHAMUDRA3_MT#DNA/MuLE-MuDR 969-3660 via tfasty with OSMUD1, 1 frameshift and 4 stopcodons. (may be a small intron instead of frameshift & 2 stops) [Medicago truncatula]
MIAYKKGEIYEYGGEWDIDEVNLKDLDNLVREIGVEGEYKLWYVCPGLDIIDGLRLLNTDRDVVRFINEHRNVSVAEFYV
EAKDVEVEDCRYDSEVEEVVVFDKGKQPAESDEGDESDPEYNGDEEGEVPDYEVEDEDGSVDGVSVDDSDFDEEWDWTTV
LPKQTVNPTPAGQSYNSNQAVVGVEVSRNPKATSLEDFEDENGDSDFLESSDASEEDEGSRKRKLNRFKLGDNNDPVIFE
EGQIFATAVLIKTAVKEYALQNKKNVYLKKSEKKRIVVKCMQGCPYHMRFSRVPPQTYYVFSSYKSVHKCYQTGRIRVLS
GQLLAKKLVPLLKHTPNMTIKGLKDECKNRWNVMLSSFQMYRAKLRALEMIHGASDEQYAHLRNYAEELLRSNPGSSVKI
KCKPSAGGVVFQRIYVCFNACKRAFVSNCRPLIGLDGCFLKGKYGGQLLSAIGKDANNQMIPIAFAVVEAETKDSWDWFM
ELLLSDLNGVEFKTWSFISDQQKVIFISFMKLILIVLNLILIYINKLFFQLYFVKGLVNTIAAIGDHVEHRFCVRHLYGN
FRKRHPGEKLKEAMWKAARANTMPEFNRAMEDLKRLSEAAWEEMRQYAPGMWSRAGYSTHTNCDLQVNNMxEAFNSAIXE
LRExPIISLVEGLKFYITNRIVKLRDYMLRYDGEICPMIKKILEKAKKDANGWSPIWCGDREYAMFTVTDGTDTYVVNLK
DKTCACRKWDLSGIPCPHAIAGIYYNQANADDYVHIGTGxFFYKFLLFFxCYSLDFSECLICLYKIDRKQTFLDTYDNFI
LPSNGPKLWPEVNLPPILPPGVRRAPGRPKKPRRKDNDEPKSASKKGKRNQETVRCRRCKELGHNTRTCDGKTGADRRIP
PGGNKVTLCNVLIKLSF
>Vandal6_tp#DNA/MuLE-MuDR 717-3092 [Arabidopsis]
MKKKIHTKVHFDFGGYYSEVNEWIGKNSLYAISFKTSSLEKISYSMLVDKIMKKVAIDEASVKLKLSYNLSKVRRETYIV
DDEDVFIFLTESDEESRIPVLHVEELNGIGVERREEISVPERRSSVGVNVIEDDVLNEVCEMVHDGYDNDVNDCENVVGT
EIVAVERPMERPVNSVEEEDEDDRIDYDDIHDIPRSVEVTPQVIEWDDGTGIEIGQEFCSREAVWELVNRAAKKEVFGVY
TIKSDPLRLMLRCRQASKGCTWYLRVARTKKSHFWSVRVHRKMHTCSRSVETTSNSIQRGTPRLIASVLHCDYPGNLETP
TPKNIMSIVRGRLGVHCSYSTALRGKMLHVSDVRGTPERSYTMLFSYLYMLEKVNPGTVTYVELEGEKKFKYLFIALGAC
IEGFRAMRKVIVVDATHLKTVYGGMLVIATAQDPNHHHYPLAFGIIDSEKDVSWIWFLEKLKTVYSDVPGLVFISDRHQS
IKKAVKTVYPNALHAACIWHLCQNMRDRVTIDKDGAAVKFRDCAHAYTESEFEKEFGHFTSLWPKAADFLVKVGFEKWSR
CHFKGDKYNIDTSNSAESINGVFKKARKYHLLPMIDVMISKFSEWFNEHRQASGSCPITAQVVPTVENILHIRCQVAAKL
TVFELNSYNQEYNVIDLNSVSFLVDLKMKSCSCKCFDIDKIPCVHAMAAARHLARKEGRNANTTIYGLCSVYYLIDSWSL
AYYRTLYVVPHESVWVLPAHIKELVAFPPEYTPKGPGRNQEKRFPSAGEARKRRKSQPGINLEAWLQPEED
>Vandal22#DNA/MuLE-MuDR 433-3363 via tfasty with Vandal5_tp, 4 frameshifts and 5 stopcodons. [Arabidopsis]
MIFCLQPTINYDSVFVFSGDESCVSMVGCWICYSNGWWDFKVDKTRPRKCINCGKIDTFKSLEEVIRRRFSMVVNDVFVE
MSYSADDVLVRLNGQETAPTEIQDDWSFIMFKSLLRSDSSVNLFVTFKRVVDNKLEFLDPLEIVVPPYNRGFPLIQGDNT
VKELQPFIFGVPDKTSVHHENGFDVHQELEHSVREPNPVSDISSPTGDVRDLVIWDGTVDNSLIAHIEEIEAQLKDENPQ
KDVVDDSESNDDFNEFSEEDDDPDYQSGSEEDEDDDVWTEKVLDENVALDDDFTDPPLRKVQNYSYLLREMDDFVNPPLL
VDNPLLSPIQVKRRKVSLKELSSNxKKEQAAALKRGITLCEIYDFEDIEPMFIDSDSPDFRGHNIDLSKEDNVIFKGRVF
ETKDEFKVSLSIYAINQIFRFKFVRYTKCYLVAQCVDKKxDWRVYAHKIGDIDEYEVRKVKLEHVCDVETxGQFTKYTTS
KIIAALLRSKYVNVTTGPRARDLPQAVLDEHNVTASYWKCWKAKELAKSSTQGTEETSYLLLPLYLYLLQLANPGTVYYI
ETEDDDVGDERFKYAFVSLGASIxGMKFIQRVVVVDGTHLQGKYHGCLLTASEHDANFQVFPIAFAIVDNENHNSWTWFM
EKLRDIVPDGSDLIIISDRHQSIYHAKSLVYTQAHHVCCLVHLRRNVRSLYKGMSGLVWKAGEMFRVKDFKKAYARIKRR
KPECWEYLEVIGVEHWTRAHFKGERYNLMSSNIALNNALLPARDSPVVALIEFFRKILSRWFEARRKKVSTHSGIDPVEV
EKILLKQLPYSIGVSIRTASAWDYEITTKDGGKFHVSLEKRTCTCRSFQLLxISCPHAMAAAHSREMEYRSLVGCIHKND
IWAPTFDGVILPVQDPSEVGVLDSVRIRCILPPKTKRPSGRPPKVRIPTTGEFEVNILALHLYYDVTNSYSQQSMIIYAW
RNKILVQERTNAEGAIV
>Vandal18_p2#DNA/MuLE-MuDR 10626-6494 #reverseORF ca 10 introns, frameshift  [Arabidopsis]
MSPMRSSTSKAKQKSALGGARRSVSFEDDDDPFLSAKSTAEQSSDPPIIPRIPEFNRERLPKRLYATDCYPLNGRINTYS
KPKYLLYLVDILDGTKELNYICAPCFSPFFQFEVRKCSFSGKLVHQMLCRGLYTRKKHEIWFVFAGQPFRFLLREFAILS
GLNCGPYPSRRDILKSQQPINLRHPYWNVLIVRSKLSISPLLPIDDPPYPNINDYWIDEVEDPTLDYMERVIGSRYKFQQ
SDWRGGCRTWPKIVVDENHPKEDNARKAKKVPPHRPSDIPDSFQAGPSAKGKGKVHEEFSTPPPRTDGHDILHGLIMEQV
NSKFRELKDELKVELFGDLTENSLLKDELLDEIISNLRHGDKFPSPKSGGKSPKSTSGDGIVTPPPKAASQKDIADEGQI
SDPAKNLDPKIVPERQSNMPSRIADSSSKNPAPSGQTHAQLLNALQQQAWSNYGGLSEVIKNINQSHASSSGPPQAGKFG
STCSDPSGGPSSSKSSSDHNPKDFQTPLQTIPEDTEAEDQDAALGDAAIGDEEMDGKSDNVNITEDHNPNDFLTPQDEAV
LVSDSESGDDFDDGANQEDEGDKDPQRGDEGDDTHQGDGDPKQGDEGDDESEGSKPFVITVAIHPEELLQSSKVDTEQLS
DQEKGKKKPQRFCETVTVSVVKGPHDDLHPIAKVNDEVRKSFLSTIKAYRQRKYVIEGHVVPKTFFKDMHTPQAAVHQEA
WFADVDILYTPLHLTAGHCVSIVINQKEGTIGVLDPIADSKTAKQMDDLRTNEVPLEFAYDRLPEVFQTEHADDSGPLVV
KFIELHFQAISHDSITEESVEDLRMRFAVDIYEEFIEALRV
>RMU1A23#DNA/MuLE-MuDR 698-3228 Via genewise with MuDR_ZM_mudrA, 1 frameshift, 1 stopcodon and 2 introns (1247:1340, 2918:3002) [Oryza sativa]
VDWENLQIIEPLDEEGRVNIVDDDQLYVLLGLRAEDEAAENAPSGGXTEQGNGNDGNGAENGNHDENEVEVEXPVEDEVA
GERMMVNDANKPSLVKGTLYPDMKVFRLAVRQFAINEEFELWVKATDRKKYVGACKGASDSPWHVNGRRQADERTVMVTK
FTNHHTCTSSGRRKTTTPTSAWVASKAIHILGTDSGMGPKELQKRLQEDQKCKINYDTVAKGRSLAMIQLHGSWEENFHM
LYRWRAAVMERSPGSVIEIDTVEVDGKVYFNRFFCAFSPCITGFLTGCRPYLSVDSTALNGLWKGHLASAIAIDGNNWMY
PLAFGFFDAETTDNWAWFMIQLLKAIGKVSPLAICTDACKGLEIAVHRVFPWAEHRECFNHLMQNLIKKYGGSVFQEMYP
AARSYRAQVHEECMDTIKKACTDVALWLDTCHKLIWYRSGFNAEIKCDYVTNNLAECFNNWIRDIKALPICELADTCREM
IMTLWNRRRRIGNKFTGTILPANLHQLRARTRGLGHLSVVHADITTAEVWDNSSSHARHVVRTHEQSCTCQEWQHTGKPC
RHALAVITSXQIRDVKLEKYINPYYSVALFWNAYNSIIEPLPDKSQWPKVDLPFVLGAPLAKRNLGRYRKLRIKGCLKGG
GSKPKDNAKEKATIRGKRCKKCGELGHGQTSYKCKLNGTKKKPKRKARWNTTRYGPAPAPNAPDVVYAPAPDAYAAPAAH
AAPIPYTPTRPTVETIIQESPTIVTRRLVQPTTITLT
>MuDRASH3_MT_tp#DNA/MuLE-MuDR 887-4410 (via genscan; 2 introns) [Medicago truncatula]
MEEHITLILHHGGDLVRNENRRLQYVGGEFCVWEKIYVDELCLWDIEKMVKHCKSYFKVSKLGYMKPYEGVSNDLNICLT
PLTTDQHILDMVQAARSNGNEVEIYAQHLVDNEEVEIVPLTTEEREEVEREMEKCLRSAKTREEEPIKVMEVDILTAEER
NVVECLVASVQTRVGNEEEIVDDMQEGMEEDNVGATQGREEDNVGATQGREEDNVVDNEGGNVTQAEESQPQETVTQQET
QVEENVTKGAQKKARKSKGKEKQTAAPKRKRPVRYSRGTGVTINDDGPLVFDSSSDDTDFEADYVAGHRDSHCEVGNGSQ
VHIEMSEPNEVCSDNDSYVSEELRSPISTDDEGDGNRNIVYPQFNENAGFGDVNLELGMEFATLQKFKDAVKDYTIHKGK
DIKWLKNDKKRARAECKHETCGWVIYCARDEKRKCFQIRTFVSKHDCPTDFKNKQANRKWVVKMLEKVLRFDPEIKHREI
FDLFKKDYKVILDDNLIFRATKEARDLVEGSEREQYGLLWDYANELLRSNPNSTVRMNTTPMPQSPPQFKRFYVCLDACK
QGFKAGCRPLIGLDGCFLKGYYGGQLLSAVGQDGNNHIFPIAFXIVDVETKDNWNWFLKLLHKDLGDYERNGWNFISDMQ
KGLIPAMQEVMPGVPHRYCAMHLWRNFTKQWKEKELRGVVWECARATTPTQFNRIMERVKRLNQKAWEYLNKWPKEAWTK
AYFSENCKADNIVNNACEVFNAKILNYRGKPILTFAEDVRCYVMRKMSHNKMKLDGRAGPLCPWQQSRLEKEKLASHNWT
PVWSGDNPRQRYQIENYSRIKVDVDIFKQTCTCRFWQLTALALRGLKPEDHCHAWLTLGSYRATYNYFIQPVNSQIYWES
TPYEKPVPPKVKRAPGRPKKARRNDGNEEPVCGSQMKKTYNDTQCGRCGLLDHNARSCMMQGVSRRPKENPGNVDDVDEN
AGNVDAVDENAGNTPNEVPENAPNFVPGNAPNEVPENVVPAIDPNEVPANVVPENAPYFVQHNVVAHAGQV
>MuDR-18_SBi_p2#DNA/MuLE-MuDR 6535-7218 80% similar to MuDR-18_SBi_p1 [Sorghum bicolor]
MARQDRVKIRFSTKRLQNLCEKLNEDQKNFVRAHGFENFLNLSIFTVPIPLLEWIMIHFQCGVKEFQYRGKTIRFTKQMV
EQVIGFTSGDITVDLSNVPPDQIEEAKAYKVDYVIGNSKPSIAEAIKLCLAEQNEEAFMRSFMIVALATIVCPNTQNSFD
LNLLSYLMRPEQIRHYDWASFCFDYIIEEVDRFQRNISSSETHIRNGTHCYGSCLPLLAVIIFHTLL
>MuDRB_PT#DNA/MuLE-MuDR 786-3167 via tfasty with OSMUD1, 1 stopcodon. [Citrus trifoliata]
MSQISILVRFLGKDVEDAYDPDCLSLVSLINDVLNNVFGRHKHYDESFKLTGIVPWSNEGIELNNDKDFQNLVNLIQAKG
LNSINLEMDALSLASLSPVLAQTCPEDNHFASNAVNVDILDGESDDAISVESIDWSDEDIGDIVKSDSEPEVDLGFDINE
FDGDDGMSDCESDNEDVSIASDEEDDAVILKMTRDLRKKRFKKPDGDDDIVLEVGQTFSCAQEFKNVLKDYDIQESRVLK
RKKNDKCRVTAVCAGKDKEGKECPWRTHASLLVDKVTFQIKTLKGGEHKCKELFKNPEVTSRWIAQKLYGFISFNPDIGC
ESMSDELRKRFSCSTTKKRLYMAKKRVLKIADSDYTKSYAKLHDYANVLLIKNKRAMVKIQYETQGVETYFKRIFISFDA
LQNGFIRGCRRFIGVDGCHLKTSFGGILLTAVTLDANNGIFPLAVCICEVECKDSWKWFLELLKEHLGIVNEMALTIMSD
RQKGLIQAIDEVLPGCTTRHCARYIYANFRKEHSAEELRGMFWKAVRATNKVDFEKEMKKIKEFKKEAYEWLMHNEPETW
ACHTFDPFFKIDHVTNNMSESWNSLLNEYRKKPILQLLEFIRLKIMKRLIRRREKAALxYSDLPPRVHRKLTKISKALRK
LIVVKASKAQYEVLEFIDDEERHYVVDLKKFECDCGAWQISGMPCKHAMACISRNSLEPIDFIDESLKKDAYLRTYSETI
CPIPDQCNWPSVDKPILLPPVKYVKIGRPKHNRKRERNEGPARKKRYTLTCSQCNKLGHNKRSCPLNKEVLNMI
>MUJITOS1#DNA/MuLE-MuDR 565-2888 via genewise with 13358810_Cti (1 intron, 1 frameshift) MuDR-2_SBi protein near-identical. [Oryza sativa]
MDHAVITVEAVDAGVVAHLEQPSTPQPTSSPSIAESCKEHLKPMVGMIFDTLTDVEKFYKSYAHEAGFSVRVGQHKKQNE
EILFKRYYCSREGYIKERVKDVSDESGKKKRKTPYMMETRCGCEAHIVVKLGSDKKYRISSMIGEHSHGFVSPDKRHLLR
SNRTVSERAKSTLFSCHKASIGTSQAFRLLQVSDGGFQNVGCTLRNLQNYYHDLRCKIKDADAQMFVGQLERKKEVNPAF
FYEFMVDKQGRLVRVFWADAICRKNYSVFGDVLSVDSTYSTNQYNMKFVPFTGVNHHLQSVFLGASFLADEKIESFVWLF
QTFLKATGGVAPRLIITDEDASMKAAIAQILPNTVHRLCMWHIMEKVPEKVGPSIREDGEFWDRLHKCVWGSEDSDDFES
EWNSIMAKYGLIGNEWFSTKFDIRQSWILAYFMDIPLAGILSTTSRSESANSFFNRFIHRKLTFVEFWLRFDTALECQRQ
EELKADNISLHTNPKLMTPWDMEKQCSGIYTHEVFSKFQEQLIVARDHCIIQGISKSGDMKIVTISSLFEKERVVQMNKS
NMFGTCSCKLYESYGIPCRHIIQVLRGEKQNEIPSIYIMKRWEKICKRSYGGGNAEKNFRFTQQVLRXIQMAKNSEQGME
FLYSSLSDLVEPLQKIIPAAIVNKQDEFESFLGSKIPDEVEIHPPNIKSKGPCKRIKKSKEKKAPRKRKCGKCKQVVDHD
ARNCPNNTVG
>MUDSOLT1#DNA/MuLE-MuDR 1341-3311 via tfasty with 6175165_Ath, 4 stopcodons in regions of similarity o other MuDR transposases, so probably not introns. [Solanum tuberosum]
FESKKDFKSAVVTHEIKNGKYIQWLKNDKERIKAVCIHSECKWEITACKMQRDTSFQIRKYIPTHNCKEWHYDNRKITSS
FIARKYLTxIKSNRAxSLVDFRDTVSVDPRAHVTLSQANRAKMLAIALIDGDIKDQYKMMWDYCIEIDRTNPGSTIHMKF
TENEIPNKPYRFxRIYICFAACKLAFKVGCRKIIGMDGCWLKGPMYRTQLLTAVGIDGNNSIFPIAYAIVEKESKESWVW
FLNYLAADLDVDKTGWTFMSNKxKGLIEAFNEVLPYVNHRFCARHLHNNFKRAGFGGFTLKKAFWAAAKATTVKEFDACM
VRIRELDPNAVDWLNDKEPSQWSRSHLSSDAKCDILLNNICEVFNSMIFDARDKPIVTLLEKLRYLLMARMLANREKAHK
WSSNDVCPKIKDILHKNQTAAGEYIPRKSNQRKYEIIGATIHDSWAVDLENRICSCTKWSIMGIPCKHAIAAIRAKKDNI
LDYVDDCYKVETYRRIYEHAILSINGPQMWPKSTKVPPLPLTIVGNKKTGRKQKARRKEADEVGASRTKIKRKQQSLDCS
TCNKPGHNKKTCKYNVVSQETTSVHQKLHVLLYLNYIRIGFLSDNLKLTQFICELMIQVRRGLEEAGQEKTRQEGAGQEK
TVGQEEVVDIDSGWIYY
>Rehavkus-1_NVi_p1#DNA/MuLE-NOF 4969-6771 via tfasty with NOF_FB, 2 frameshifts and 3 stopcodons. Severely beaten-up. Remainder of coding region on opposite strand. [Nasonia vitripennis]
LKGYASQIWKDIQTSLKLKMLPKSLFFPFIKTKNAKMSxKVFLKFRxQKNKVTPHDSDYAERDISNPYNYDELDFILEIP
KHDVIDCLETKKKKEEWTEKIREKIKILKNLLCPFALNGHITKDKFKFYGRCSDCETGIFGGSNNNEDNLSIRVKTSTTY
EIPHSKKLKQNGSRRREVKKVLRNQTASDYRESELGKIDTNYEPPDLNSTVTLRKVKEEALDESIGYTEFKRTSITNKVF
VNLCNIRKLSVNPFYTVYFSDYQLQFWNEIQHKKLPLSFESTGGLLRKYKFYPGITSRTTYYYVMVVENRKKIVPVLQAI
LSIHHVLVIQEILEIPKEISTDGSLALQNAICQSFNKMTFKEYSAQCFQVLLNQNQELPYCYYCHDVAHFLKSIADWKCM
EQVNQNVRDFYLRSVGYSTQVNKLEKFKDVVRSIVVIANSQLAEEGSEPHKHISKLIKVFKTYEHEIQNIEKPAFTDDVP
HNLTSFIDNLFTKTSSSNIEETLSDKAYFYYCPDFIKLFKNICYTFPSWTNCMKDYFQxPNLVSTLARSETYFKYQKDRI
PNPIIMEKFILRDCKKLKSSVKVGFMKLKNDKKQEKKWKFI
>P-2_CR_tp#DNA/P [Chlamydomonas reinhardtii]
MERSRQGGRCWLLWALALTAFAAMGVEKGWCVLCGTYVKSKDPFATLSTGGMRPDYCNGTNDCCSYVSPPPLSHPSPPPP
PAHPSPLPPLPPPSPPPPLPPLHWPTTAALPNPPPPPFPPPASSFLPADRPKWTEKVGAHMEPPTAVEIIFYSLLNAVFK
DTTYKDITLSNVTRTDEVCARVAPLFAYLVNLTCTPKQLERFLSDFRTGKGNAAVTAWDRGWKRCTKYGIFIRDFSASAV
GSFLVELLEQEDPLAVYQSVYETDIPPATILNAAAAAATEAKGGTLEQLPEHERFARIMHSFNGRAQRGDPKWDRAVQDD
WHCSVHRNRQASAVATAARKEAAAKARIAEQLQSALDAHQHAEAQLAQARKENCQLQARNTSLQADCERYAEELDQSRAR
MRELSADHSSALLHLLEKPAARQVIEQHPGLAAMWADQLEYLGRSASGGKATRGMRWHNSAIQLGLTVLNKGGEGLFEEL
RSFMPLPSINTLLAYKHFAIDGSGFHRAHAERAAELLRAGKADTRVGLAFDEMKLSRGLTFSTTSDSLTGFTDVDAAAYA
QRLEGLLDSSGGAASADPDAPSVCRALATHVLHFEVTALGERPTRYSVGYVFTDGIKAVELQSVVSEVIVLLEAAGLQVA
YTVCDGASENRAWMKMMADRDLAVQLAKDTEIKLPCPDKDVTECLRCFRSPANPERPVIMISDAPHLIKKMRNAIEKSFG
GTGKDGKNTSEVFFPEDVTPSTAPPPTGLPPAAPPPIPVPVAAPLPTGLPPAAPPPIPVAVAAQPPTGLPPAAQPPIPVP
AAPPPPVPTPPPPVTTQHTEPVPPPVPAPRWRPIMWRDVVKCVRWDMHSLPRVMGNVTNAMTDLDSWSRMRNHLASKLFA
GLEMFCKWTAEMGWVRDNQKAPPQHIIDGARDLRPYVRLALSTKLSTDRVTPVRDASDPHLRQLLHNGTVVYDWHQALKA
VPPDDDDLRPGVRHGLSHQCQSDFQVTCFGTVALARWYLRTGGTSIILGTINQNCVENAFSQLRGHGQDRAPTAAAVVSG
EASLRMNKALAVLNSGLGAHKSGSSYQAAHNGSLVAPDAAAAAELLRRRMRVALPGQRKEPAASTWQLRDLDTARAEPAA
GLQSDARRAQALAQLIAPPLIGKKGPLAENPQLATALRAAEAGKPSPAFVQYSCWLLNSTAAAAQDAASKGTAADTFAPV
AAARHGPACAAAWAWCVRNLTASEPQGSMPQLPLVSKGAAATDAASAAALRGLGDAACLVHGACFNAAYSLGVLNAVLMP
DAHHGGTKAQQEEKAVHAQVFELYSSTTACERVLGWALHSAIKATPEADPTRRILQQFVSGRADGTHRRVFNDELQESLP
QGKLYVPHPALVSFFVELHPTIIERFQCANMVLQDGAYAVKDLIGRIRCDQGCWERFQAAYQQAAKDSTVGTGSSSHVRA
AMGVLVSKYIHANLVGLLRHTQLLAGKDDAAARALRDERRADAAKKSKGGKPTKLVDASTCCLVCERPQPAENMLLCSRC
SSPYHTHCLDPPIKMPALEEEWFCHECSAALTGAAQPLAAGSTSVMGAGGAGGRGRGRGRGRGRGQPAADKDAVALAPAA
SMDSGRGRGRGRGRGRGGTGGQDTNTQPMDVDGPGDARMAVPVPEPEPEQLRTQPMRVRFQPKRLQAVSPVKPADKRKRP
>P-1_TV_tp#DNA/P 4165-6195  [Trichomonas vaginalis]
MNVGFYIPLSDINELKKKIEELEIEIKGDRETFLVKFNQDIRKQIYKRSFETDVQVFPYTGTGKMHMYKAYLEDLDAIKA
EMRRSLLNKNIGRKTKEIEEDNDDHQDRTYWNTEFPEHVPEFTRNIIHTIMENICRKDKRGYRYGGESELVDLAFLIHSK
SPAAYDVLLEFCLPFPTPVTLYNRFHEDIMNMKQFVKHAELIPRMLESMNYHVENTPEYEWAIAIDAVALSTWSSKDQKG
PVDENGEEIKYLFIFLGMPLNFDAPNVILHVIEHANGFASGIIHEIDAAIEEIRKHLRVRVIITDGDPGYDKHQDEFINE
ILQGNDPEEIFKRATAILKKGDQVVWINDLIHMSKLERTRLLDATLKLLVHPSDLNTIVDVNKIRDAIELGDALNDTSPL
GRIKDKYPITIFSIRAVKALLEKNYYNEALFIAPLAFWYESIRNEAFNADTRCQMMWFAYLLLVHHCIQMRDRHIKTNLG
VVKIDGNIYPVYYMGTWEVVKHLTATIICFQYFFSINSTFFNFSHLTTMTEEHLNGLLRVMAHFKYDLSTTETSIAECNL
TLKIHKKYDIDWKTHSRDYQAGITFEDIYTMRQDSRQYEMCKEYAYALLSKCGFRYNSNSSVDVLLSWVNEINQFHSKIL
MSTHISNPISGYSIFSRLSVKKDVFDNPTKKNHARKD
>P-28_HM#DNA/P 705-3561 via tfasty with P1_Cis_tp and genewise with P-13_HM, 4 frameshifts, 1 stopcodon and 1 intron (1076:1142). [Hydra magnipapillata]
MPSCCVFGCTNRTGSKNNLNEKVSFHKFPKDIEKKKKWIHNIGQENYIPSSNVTLCSEHFEKSCFDKTGQTIRLKQNSEP
TVFILPKQSLKVCISxLIIKKPNNYFLTNCNIVKELLTFLKFTMSLHNFILYCQVNRKRKALSVSLTSLENGVEGSVIDI
NVNFSPFKVQKNKIQNLKSKLKSAQQKNRRLKSKVKSLKKVVQCLKSNNLISSQCEEMLTTTFSGVPLEIMKRVSSIKNQ
HSIRTKFPDELRSFAMTLQFYSSKAYEYVRKTFQLALPHQSQIRHWYTKIPAEPGFTKAAFIALQAAVCASKKIGREILC
SLMLDEMAIKKQVQWDGKKFRGFVDLGNGIDNDDSLPLARDALVLMVVSINSNWKVPCGYFFIDGLNGAERANLVKNCLK
KLFDVGVKVVSLTCDGPSYNFAMLSELGANLKPSNLLPSFPNPSKSCEKVYVLLDVCHMLKLLRNTLADIGIIVDSNNNK
IRWHYLVELEKLQSKEGIRMGNKLKLAHIEFRQQKMKVNLAAQIFSSSVADALLYCSENLKLSQFEGCGATVEFIRIIDR
LYDILNSRNPFAKGYKSALRTCNKALWFPFLEMAYNYIISLKDTTGTQMILSSRKTGFIGFLIELESVQGIFLDWVEKEG
SPLNYLLTYKLSQDHLELFFGAVRSAGMFNNNPNCQQFTATYKRLLLRSSIQCSNGNCSIRDKTHILNVLDDSFADFSTK
ISMTEIELIRKYDLLERKPTINDHDYADIPNFSNLSEYKKVSISYIAGYVAKMTIKKIICIKCQNALVLPFHLEQNSFLK
FKDRGGLIKPTISVTIICEETEKCFQRLLASTNAPTNEIGIQKAIASAVLRSVDFSKIFIELASHMFDSAISDNHLFSLV
QLISENYAKIRLYHLGKEQTAKITGKKLRKQLAKLVLFKNQ
>P-32_HM#DNA/P 347-2837 via tfasty with P-15_HM, 1 frameshift. [Hydra magnipapillata]
MSYFRIHTNTLYSFNFFIKVHFDADQWEKTREDGSRKLKHNAIPTVFKHVRAKHKRKNPLERFPIPKKKKISCIESGGEV
VENVLIEVNNNEVSESVCTTEVDKSLLIQDLNAKLERLEKKVINQKKKNNILKSKARINTIQKYNHIKRDKFRVLKTIFK
EDQILSLSRKNMKFIKWSNDTINEALELKFTCGQSGYENLLRLNLPYPSLRTLRRRLENLKFQSGILTEVFEFMKTKVNA
MKIHEKECVLILDEMSITESVDYDTSTSSYYGVVTLPEHYGQANHALVFMLGGISTRWKQTVAYYYTGSSVNGGVLKNIV
LSIIKYTEEIGLKVNSVTSDMGAINQAMWKSFNISCTKSGSISSSIKHPCDPTRTIDFLADVPHLLKNIRTSLLCNKHFI
ITAKIQEKYKLQSPIIDSKHLNKLVDFQEGMDLKFAYKLTSEHLDEKHFNKMKVSRATSVMNHDVSCGLKFIASEIKDDS
ILTTAWFIGIVDKWFTLMTSRNPGMALSMKNDKVYNETITFLNEVIEIFNGLKILGQTGKIRWKPIQSGVILSTTSVINL
QNKFLLEKKFDFLMTSRFTQDCLENLFSLVRAKQVIPTALQFKNNLKLICVAQFLKKSSKGSYDIDDRQFLSGFLDIVNS
KVHKPQQRECILLPKDWDKTSNLILSNAEQNCLFHIAGYIISRVKKIEKVCTICFESLVSKNRVNADYTKFVTDKEHKVG
SLFFANETTFAFFLQMELIFRSFEPYLNSQKNCNTMLLEKINSDEQIKSLTLYPSCHQIKLKLKNRFITFRLKIFSLKKK
RLLCKKKKTKKSSCELGSKSMTMHALALKV
>P-30_HM_p2#DNA/P 4963-6159 R [Hydra magnipapillata] ??
METDIELNSEFDIETLFFSLEDDFLFQDENFNKDLDALVLELSIEPVKSTFSCTICSKKCISQRGLTRHTNSQHKGIPSD
LTLQNPKPPILLSEFKSLLDKSITTLIDDECYPDLYRNELRINHAMLLETSQQTLSLLETTIASFQANGDAEKFYPQFYK
DINCDIFINYLSKKTTRLLGCELCNHVLAFLTNSFYNNSLINLNDLSSFELSDRDKEIILYLSGYVFSTFYCRVRSSRLW
QQKLSTDCLSLLNAGKIENFLKNPEPSTEFYHKFVNAKNRGGLWKVSPPVLEIFTKVEVLFRQQSNGFVKKIDSELIVTE
ILKNSVVMASISELRSLCTNQVSKELSLNLFYHLVTLYVRVRSFSYAKEKLSIHKLKENQTKSKSLRSKMKKTSIGFE
>P-1_AP_tp#DNA/P 489-3226 via genewise with P-26_HM, 1 intron (1154:1278) [Acyrthosiphon pisum]
MDFRFPLKNPERNQLWINAVGRKGFIPTKNSAICSSHFVPSDFKINPGGNYRLHLNDTSVPSVFPGNTSEKKSQIEQNIE
QNSPIREIIDTNNLLLTTPSKVTARRPLFSPKTKSKHTSEPLKPRKIESKKKIKLLQQGIRRRDKKINNLKSLLQNMRFK
GLIEEQCEQLLIDQFEGTSQEIFCNELKNKGKRPTGYRYSIQLKEFAATLHYYSPKALKYCRTFLKLPSGKSILNWTSSI
NGEPGFFKEVFDTLQTMSPDDRHCNLIFDAMSIKKQISWDERLGKFVGYCDYGNAFELEGSETPATETLVFMLTSINGKW
KLPIGYVFQNKITASIQAELIKSALTHAHNAGMTVWSVTCDGAYTNVCTLKLLRCKISNSYDDIESWFEHPVTRSKVYYI
PDACHMLKLARNILANNYVLESDTGYIRWDHIRNLFKVQKDLTLKLANKLSMVHVNWHNNKMRVQYAAQTLSSSTADSLE
YLKNINFPGFENVEATVEYCRAIDRIFDFLNSKSKFSNAFKSPIYYNTIEKREEIIIPLIKYLYTLKFKGSPLHISSKKT
FILGFAIAVKSFFSMSRSHFVQHPNFKYLLTYKFSQDHLELLFGRIRQRLGSNNNPNTAQFKTAIKQILMKNAIKCRSKH
NCNTFDDDPIGSLFDFKWKTKKDDIDYEKVNFETIDIEALKKLQLLNSYIPESNNYSSTLQDAKNNILYYIVGYLIRKLN
LDCSSCENAVLDKFNEHDYCKSLSFTKFVNFKNRSGLVFGSKSVFLIILEAEKMFLFLTDNFKSLQIPNLEIKIIKHVIV
TFSTDKNIFPNLNCENISILERPHKILLITLLTKKCLKLRLKSFSKMYSSDIMNPVSKRHKLSKLILFSNQ
>55243097_Aga#DNA/P gi|55243097|gb|EAA06886.2| ENSANGP00000017534 [Anopheles gambiae str. PEST]
LKKTLSSNQIDLITGKRKKVRWTKEEISKFFTLRYFGLRSYQYLGKDMYFPVAAPCTLQRYSSKLDLKQGILNDVLILLN
NITCEMNDNERECILSFDEMKVSKTLEYDPAADEVLGPHNYLQVVMARGLFKNWKQPVFIGFDQQMTKDILHEIIRRLHH
ININVVGIVSDNCQSNVGCWKDLGAHVYSRPYFNHPITNCNIYVFPDAPHILKLIRNWLLDTGFEYNGKIIKLDKLIELI
RNRNVAEMTPIFKLTDNHLNMTPQERQNVRKAAELLSRTTSIALQRYYPEDSDAKELASFIEKVDLWFNIANSYSPKAKL
DFKKSYNGNENQTGALKDMFDLMLNMRAIGKKGMQVFQKSVLMHISSLQLLFGDMKRKYGSRLNQDVLENFFSQLRQIGG
VYDHPSPLSCIYRIRIIILGKSPTILKNHTSQKNIEEEASHEHVEEFLSATVFARVDIPQSLPDMEEMEKTNDICQAVED
NSSDSDSVSTVGCQTFKINSDHCYCQPPTFVRHLSVGGLFEPSQTFLTLGYKMEQVFNKINKNGNLSKMKGIVAKIAMTI
QKKIPELPFEIIKTFAKQRVIVRMRFLNMKRSSENQLRR
>31229997_Aga#DNA/P gi|31229997|ref|XP_318318.1| ENSANGP00000001708  C-term extended with 31194101_Aga [Anopheles gambiae]
PMAAPSTLQRYGRKINLKQGILEDVLNLVGTAAKTFSNKDRECVLSFDEMKVESVLEYDPAADEVMGPFNYVQVVMARGL
FKNWKQPIYIGFDQSMTKEIIMEKLNEKNINVVAIVSDNCPANTSCWKELGAVDYNNPCFPHPISKKNVYVVPDVPHLLK
LTRNWLVDHGFKYHDKTITIEPLKHIVEGRMAAEMTPVFKINQRHIKMTSQQKQNVKKAAQLLSRTVSVSLRRYIVKKAK
DLADFIEKVDLWFSVSNSYSPYAKEDYKKSYNGNDNQIKALNDMRELMLNSIAIGKCSLQIFQKSILMQTTALQMLYQDM
KEKHDIKFISTYKLNQDVLENFFSQIRQKGGVYDHPSPLSCLYRIRIMILGKSPSILHNQTDTEEKKNQEQDEYLTTTET
NGDDTYESVQSEEFLAATMFSEAGINPSLPDINAMERVNGISDQ
>Galileo_DM#DNA/P 1799-4579 via tfasty with Galileo_DB, 2 frameshifts and 1 stopcodon. [Drosophila melanogaster]
MAETSAIKKSTVGVKKCxQRNGGKCIIETSGASYRNSSIHSPVSLFAFPSKEYYLNKWIIACNLPNNFDRKRARICNRHF
ERKYIGKRYLKANAVPTLHLGNSNLISNNNADVSDDIYSLDIQEEAITPHSYQKKCLNKVVDDFMKPSDTEQQHQSSNIQ
TQSDGEENLENFLSFDNSLQNQLWQDLSASRSSFCSNFLKREQNEVYYRKKYYEMKVALQNVQNKNYNLKKRYSFLRNAH
RQRNIYQRARKEKNNLPHVSDQSKVLCKMLLKNQVYNSAEKVISQNMHFYSARAYDYLRDVLNLRLPCKKQLNRWAILKN
LVPGFNPELLENLKDIVGKMSAKEKYTVLVCDEIKVKRGLQYNSSLDEIQGFENDGIKRTKFLGQQVCVFLVRRLFDNWK
YVLSYTVSARGINHTDLKKKFEENIGLSQALGLNVKAVVCDQGSNNKAVFNRWGIDLNNHSFEVNGEKFFAIFDAPHLVK
SLRNILLKNNILAPEGTVSWGIIRRLYETETKNLTRLCPKLTLKHVSPNCFEKMKVKFATQIFSHSVDAAIRTVVETGGF
ADCKDSAVATAIFIDTINNLFDCLNSHVLFDSNPYRCALRENNNVHEYLQEMRDYFLNLHYPHKVYCIDGMLITISSVIA
LAEDIWNNNTDIFFVATSKLNQDPLENLFYLIRCRGGTNSNPTVFEFNTIISKMLSMKMLTSASVSGNCIPDEDLMLANI
IKDSGSQLSVFHEQCNSCHTPTEIEPLEDDLEIELSLDTTIANIKNDFNENALRYFAGYLLHKLLQNTDCEVCTNLLKSS
DEMQCSSEYLILNKNFHYINRYLKLKAPSDHFYNLIKLHFESFRKIFEKKPYIARIKEKIVLYCMHATAKSSLDNEWFSP
THPCFEHRKSILNQFVLILIRKNCKWQTEKIVGKTSISKRKLKIIHQ
>P1_Cis_tp#DNA/P 1074-3485 wised with the human P element derived gene NP_078948. Two N terminal introns. I think they are real as the first exons match other P elements as well (e.g. 28630150_Dbo). [Ciona savignyi]
MVISCSAWGCTKRQIKTATWSFHRFPKNKEQLEQWLVALKREKFFPTKYSYICSEHFVAEDFNGRVRKRLKPGAVPSVFS
FPEHLQNRLASRAVVPEKKFKFIQSHNVLKDHNYCNTGSPKQKIENIKRKLIKIRKQKKVLLVQKCRATKQVKGLKELLV
KAKNKKYLEDKPFDILTSNFGDTAIELFCTNISKNSGKKVKYTEKIKKFAMTLHTYSPKAYQFIRKHLTLPHPRTLSKWL
SVFKGNAGITAESIEAIKNKQAKIDYKLYYSLILDEMAIKKQVEWNGKEYTGFINLGENLDDDTLPVAANALVFMLVPIN
ANWKIPIAYFFTDGLSGKTLAELVRKVLSCLHDNNILVCSLTCDGCGSNQSMLNELGVPVRYPIKQSYFLHPENPNQKIS
VFLDNCHMFKLMRNLLAQKKLLQNSTTGQQIKWDYITNLHNIQTKEGLKLANKLKRNHIEYGTQKMKVSLAVQTLSASTG
KAIQCLRQLGYAQFQGSAETENFIMLTDRLFDVMNSKNPLGKGNKAPLKKSNKQIWLPFLSTAKEYLSNLMCDGNYLYKS
QRKTAIVGYLLNIESLNQLFDTLVESGKLQYLLTYKFSQDFLELFFGGIRGANGWNNNPTCQQFKSAYRKLLSLTDDMLV
TAGNCSQSAEFTTSLSILAPIQMASPNIDIERKYNLDSDISDQNATDHTYLQTCYFSTGTYLSPMIETIVMYISGFVAKK
LIQKLLCNICINSLYTTVPPEHDQRFILISIKDNNGLTYPSSDLTKVTMTTEKVFRRYIKTTGHPTNIKGLEGAICSSVL
THLQSEKFLFNSLETHMFDTDPTDNHRITLIKKIIKLYLTIRFHHEAKVYTSKIRGRNQRQQFHKAILFKHQ
>P1_AG_tp#DNA/P 784-32381 wised with 31221170_Aga (1 intron) and extended with ORFs [Anopheles genus]
MISATSSHLLPDENDLILIGKENVCKKCKGLQQKIFNLEAKLNELEERNKQLVTINNKLSDTLKEVNEKEKEHLKKLEEL
DKATKKIKEEWPRANFVQNMKDSLKGSLSSNQIDLILGIKKTVRWTKEELSLAFTLRYFSQRAYRYIGDDMKIPVPVPRT
LQRYSSKIDLKQGILEDILKFIGSYSQTLKPMDRECVLSFDEMKVSRVLEYDPSADEIVGPFNYLQVVMMRGLFKQWKQP
IFIGFDTKMTKDIIIEIISRLSEKDINVVAIISDNCQTNIGCWKELGARDDVEKPYFPHPKTNKNVYVIPDTPHLLKLLR
NWLLDHGFEYNGQLIETTNLLRMVAKRMESEMTPLFKLTTSHIDMTPQERQNVRRAAELLSRTTAVALRTYFPDDDNAKI
LANFIEKVDVWFSISNSYTPFAKLDFKKAYTASDDQVRALTDMYDIISNMTIPGKNGLQIFQRSIMMQIKSLQMVFADMK
LKHDAKFICTHKLNQDVLENFFSQLRQIGGVYDHPSPLSCIYRIRLMILGKTPTILHNQTTTVEAANCEQDEFITTTESN
VAGARSNDVFISASMFEKAEITPELPDVKAMEEANNFVSQDVSSLSSVSDTSIELPHQEADGLSYILGYLAKKHHSQFSH
LNLGEHTFKTRIDHNYCQPPTFVHHLSCGGLIEPSDEFLNLGKKMEKIFLKMNPDGGLLKGERIVDRITNKIKRHLTELP
VEIIRSFAKQRVIVRMRYLNLKATAEQLNKMKKKRKFVTENTKAAKKMKKIIN
>ISXo7_tp#DNA/TcMar-IS885 gi|14486414|gb|AAK61303.1| putative transposase [Xanthomonas oryzae pv. oryzae]
MEATDMRSLSRDARHERRVQVIRLRKAGQTYVEIAAQTGLSRTGVFDICKRHDVAGAKALRDAPSGRRSGDGRLLDAAQE
ALVRKLITDKTPDQLKMPYALWTRAAVSQLIEQRFGIRLPVRTMGLYLARWGFTPQKPMKKAYEQSPAAVRKWLDEDYPV
IAARAKAEGAEIHWGDESGLRSDDVRGRGFAPKGQTPVIRVNSKRHGLSVISTVTNKGQMRWRIFDGALNTNILIDFLRR
LIYGASKKLFLILDNLGVRHAKPVKAWLPEHPDAIKVFYLPSYSPELNPDEMANADIKQAVTTLAPARTKLQLVKATARH
LRSVQRQPERIRKYFEHGPVRYAA
>54031971_Polamoronas#DNA/TcMar-IS885 gi|54031971|ref|ZP_00364104.1| COG3335: Transposase and inactivated derivatives [Polaromonas sp. JS666]
MVLAVRGGMTQAEAARVHGLSLRAVQKACARAREGSLRALKGDARGRPAGHTLLSQAQQAKVRGIILGKLPDQLKLPFYL
WTRQAVAQLAKRECGVDLSPTTVGRYLKDWGMTAQKPVRRAYERNDAAIAAWLAEQYPLIAKQAKREGAQIYWGDEMGLR
SDHVSGKSYAPAGQTPLIRATGQRFGCNMISAITNKGALAFMVFEGKFRAPLFVEFLRRLLKQVEGKICLIVDGHPVHKS
GVVKRFVQANAQRLRLILLPGYCPELNPDELLNQDVKTNALGKSRPANKSEMIKAVRSHLHRRQKQPTIIRNLFKEKHVR
YAA
>ISRm11_SM_tp#DNA/TcMar-ISRm11  gi|1072027|gb|AAC43490.1| putative transposase combined with gi|15966850|ref|NP_387203.1 [Sinorhizobium meliloti]
MARPFSNDLRERVVDAVTGEGLSCRAAAKRFGIGISTAIDWVRRFRETGSAAPGQMGGHKPRKLSGPHRAWLLCRCRERD
FTLHGLVAELSERGLKVDYRAVWTFVHEEGLSYKKRTLVASERERPDVARHRARWLKHCPGIDPARLVFIDETWTKTNMA
PLRGWAPRGERLVGYAPFGHWNTMTFVAALRADRVSAPFILDGPINGERFRIYVQQVLVPELKAGDIVILDNLGSHKGQE
IRAAIRKAGARLFFLPKYSPDLNPIEKLFAKIKHWLREAQARSRDAIHDELRHILQAVTPQECAAYFKEAGYERACIHTA
LVTLRHARYEAG
>Mariner-7_NV#DNA/TcMar-ISRm11 593-1654 [Nematostella vectensis]
MPPRHRIPFEHREKLVRAFEDDAEDYLQVADTLGVNRCTARSIVARYIQHGRIRELPRGGPNNVRVDDKMRDCVREIINE
NCLLTLQQINRQLRARLPAKPEVHDRTVARMLDGMLYRVKLARPLPADRNRPDVLQKRVEYANWFMAIGVVRHCIFIDEC
GYNIWTARNHGMARLGERACRQVCRQRGRNLTVTMAISPINGLIFHSAFVGGMNARRFADFFTQVRLNLDPDENFVLIYD
GAPAHRNAVNPGPNTEIKMLPPYSPFLNPVEQAISCSKAAIKADISRPQIQAEMNNRDEARNRGVPLGIYRTNLLMEALQ
RNINTITQPKCAEWYRFMQTYLPRCLNGEMIEG
>Mariner-6_SM#DNA/TcMar-ISRm11 561-1721 via tfasty with 31212651_AG, 1 stopcodon. [Schmidtea mediterranea]
MRKCNISKNYIRSDNNKIMENNEDRIVLYSNIEENTENNIETVILNPAVNAPRRRNTTVPDDDRRRIVDSYNAGSTANEI
SRIMQYKRTTILAIIKKYQETGLTTANRRGLITEPKLSDEQKETIRVWIDEDCTISLRSICARIHTEMAITITKSSIARY
IENFNYSLKRVLLIPVRRNDENTIAVRKAYAIRFFGLQAQFADSQIIFIDEVGFKVSTRVSRGRSLVGTPAVAIVPTIRS
RNIxICCAMTRAGIVHYQTQTTPFNTACFMAFINGLIVRLRETNVQSAIFIMDNVAFHRTNAVRDLIIAEGFSYDFLPPY
SPFLNPIENMFSKWKEHTKRTNPNNEEELMTGIENGRRIITNNDCDGYFRNMIRYATRAIAEEVITD
>PUNTRIP_NC_tp#DNA/TcMar-Fot1  actually: gi|9367255|emb|CAB97272.1| related to transposase [Neurospora crassa]
MASSLLDQAISEVRNGLSQRAAAKKYGVPQSTISDRMRGTPSLRAAKIPQQRLSPAQESFLCKWILDEEKAGRAPNRRQV
SGIATSILKRGGDNDKLGARWIDRFLARNPDIKTKLSKPLESARVRGSVDDGALPTQPSPPKTPPRDEISEANNIFKTPQ
KSRDMLEGIHNEISDLNRNIRTLYTKAAKSLDIKNAELAAKDHQIQYLQTQLDSMKPRGKRKVKEGGNNRFARVEAILEA
RDASKEGPKRRRVATATTTAPPLQELGRAF
>Cirt2_CA_tp#DNA/TcMar-Fot1 160-1710 Originally from_retrobase [Candida albicans]
MAKAISDIKNGLLLSYRKAAKKYNLCHETIRKRMNGVLPKQIAHRGKQLFTPQQEKEIVKWIIESDEAGNGRSRHDIVEY
AELFLLLDRQLASIGGSWFERFKKRHKEIHVVQGRKISSLRVKAATPDQIKEYFHKYDLIVRQHQIPNENIFNYDESGFI
MGQGKSSRVAVPSYKNRTYVKSTEGRDSCTVIEAISMSGEKLIPGIIFKGQTLRTGWFNDDASDYYYSVSKCGYTSYWLS
WRWLEEVFIPQVKEKTNQGKVLLIMDGHGSHKTKKFRETCEDNNIIPLYLPPHSTHLLQPLDLGIFGPIKYGYKVKLSKL
AHALGTDPVKQQLFLLNYYEARQEKLTKERIIRSWETAGLNPFDVDKVLNSSQMIAAKINKEIDDYENNRDEHTQQDDVE
IGLYLRGTPDEELIDKLTKKIDFLELENTQLKTDVAHLQAELTSAKLEIDNYKEALKNKKPPGRSSAIPMDENQGFKRAA
PYAKEYRQNPPKKNKRKALTDMTNCTNGSNSYIRSL
>2133335_CC#DNA/TcMar-Fot1 gi|2133335|pir||JC5096 transposase - fungus [Cochliobolus carbonum]
MPQQQRSIQTSCEGRISLAIASYRNNPKQSVRALAVAYDVPKSTLQRRLHGTHARSEIVSVNRKLSPIEEQSLVQWILDL
DRRGFPPHIIDVRRMADALLAARGQDQPPQPVGKKWVSRFIQSQPELQMNWNRRLNSQRAQYEDSTIIAAWSKLVEETRQ
TYGVLDQDIYNFDETGFAMGAASTSKVVTSSDRVGWAVVVQPGNREXVTAIECVNASGWSLPPFVILSGKVHQSSWYHSL
PPDWTIGVSENDWKTDELGVEWVKHFNQHTVTRTAGVYRLLILDGHSSHATPEFDQFCTENKIITLCMPSHTSHLLQPLD
VSCYSTLKRAYGREIEELARHGVYHVDKIDFLTVYTRIRPTAFTQQNIQAGFQATGLIPPCPDRVLSSLTIVRRPSPLQT
TIDNNVIAEVAAQTETPHTVAELQQQVRYLQERLRRQPESPTSVAIRQLAKSAQLAMQSVIILTEENKKLRAEVQRQRQK
QSQQRQYIASGGVLQVQRAQQLAAEVEKMVIEASQSQAGERRQRAPPTCTKCHT
>Fot5_FO_tp#DNA/TcMar-Fot1 gi|38520869|emb|CAE55867.1| Fot5 transposase [Fusarium oxysporum f. sp. lycopersici]
MSEPNNDGRILLALKALQNNPKLSARRAAEMYHVHSRTLQRRRRGVQSRRDIVTNSRKLSDLEEETLVQFILKLDSQGFP
PRVSFVEAMANCLLADRNASPVGTRWANNFIKRQSELKTRFFRRYDYQRAKCEDPTIIRNWFRLVENTIAKYGIQLHDIW
NFDETGFMMGMISSGMVVTGSEKLGRPKSVQPGNREWITVIQAINAEGQAIEPFIIGAGQNHLANWHEEPTLPRDWVIAM
SQNGCTNNELGLEWLRHFDGRTADRSVGSYRLLILDGHESHHSVEFERYCEANKIVTLCMPAHASHLLQPLDVGCFGPLK
KAYGREIEDLIKRSVHHISKTEFFPAFVAAFQATMTEKNTRGAFRGAGLVPFDPESVISKPDVQLRTPTPPVEEASQTQP
WISKTPKTVLEAESQPEYLKRRIRRHQSSPPESILGALKSLAKGTNAIMHENALLRAELGEVRDANEILSRRRRAKRTRL
QKGGVMAVGEARDLIDQMDVDMQVVVESSRNGGQGRSARPGVRRCSVCGKTGHNARTCQEDIEVSGEDNSE
>Mariner-4_HM#DNA/TcMar-Fot1 500-2350  [Hydra magnipapillata]
MARQKYKTKVCSSKRRLQYTDSQLRDAINAVKKGMVVYKASKTFGIPYQTLRDKISGKTSLKIQHCGYESVLGEHIENKL
VEWLLTCTRMGFAMSVVQLLDTVQKYLNSNNIKTQFTNNRPAKGWFYAFLCRHEQLSQKRGEYLNRARGGVTEKAIRDWF
TEIPKLLGENAQYLNDSMRVFNMDESGFQLSPKTNLLIGERGKNTYEESARSNKKSITTLFAVNASGTFAPSLTIFKYVR
LPNRIINTAPSGWGIGKSENGWMTAECFFEYITNIFHPFLIKEEIPLPVIIFFDGHASHFSIELSEFCSKNGIILVALFP
NATHILQPLDVAVFGPMKAKWKSFCRQWRIDHEGQEINNENVPEALNSFIIDPSMANNIKSGFKNTGIFPFDANSVDYKK
IVQKLSESTVAPTPYLEENQSSVTLSASSPINFIENCIDPSILEQFKIADEHLGWKGDLEYLQLYHFWKRASSETYKTTI
LPDEIQQGNKNLSTTCNLENVQVITDMEMPDCNIAAVIEPKPACSSLKIAAEIINPIESVLIWPKQPVQTSKRKIERLPS
VVTSETWQQIQKTKLQEKSQINDEKLRKKQLAADKKSKNRGRKIKKETNGYGEKVIK
>Mariner-1_ABr#DNA/TcMar-Fot1 93-1940 [Alternaria brassicicola]
MDPIQEAIAEIESRDPGEQFSYQQIAKKYGVERTTLMRRHKHQNDDYGVRNQSLHPEREAELVRYIETLTERRLPPTRTM
IQQFASQLAGKPVSESWVSRFLRRHPNHLISRSGKAMAKERTKADSGAKYNLYFKLLHEKIEEYNIQPTHIFNMDEKGFQ
LGRVGNTKRIFSRRLYEQKGARQALEDGSSEWITVIACICSDGKALSPTLIFQGANGAVQSSWVEAVQAGEHSVFTTSSP
SGWSNNDIGLAWLKQVFERETRRHASTGYRLLLLDGHGSHVTMDFIEYCNDNKILLFVFPPHATHTLQPLDVVMFKPLAT
AYSTQLMGYLQDSQGLLNLTKGDFFQLFWRAWCSVFKPPLIKRSFEATGIYPANPDVVLKKFPKEASDSDSSQSVLSGED
WLKLKSIVRREVKDQGSKDVKKLQRSLCHIAAQNSILHEEIRGLRQSLAIKERRPKQSFTLQLDEDEVYHGGAKLWSPRS
VQRARDRRASQQQQQELEKLQKAKQAEIKKAARDCEAQLKAAKRVERERRADEKRKEEAAKQAEKQHQQLINNTKKLIKL
SQKGKRKASQPHTPATKRQKRGGVAPAVVGAARVARAAPPRSRRQRPITPSKKISE
>Mariner-3_AP#DNA/TcMar-m44 537-1839 via tfasty with 52548731_arch, 1 frameshift and 2 stopcodons   [Acyrthosiphon pisum]
MIVNLYKNKMALQATxDVPKLTAKEMIKKISEESGIGQRTVSVTLSEYRNKKTVTSPNKTKIRPKVTDKVDEFDQNAIRQ
KVHQFWHNHQIPTLNKILTAVNEDDSLPSFSKISLHRVLKHLNFEYVRKSRNSVLIERNDIVCWRRNYLETIKNYRQLGR
QIYYLDETWVNAGETTSKSWVDITVKSTRDAFLRGLTTGQKEPSGKGKRLIVVHIGSSDGFVPxGLFCFESKKNTQDYHD
EMNGDNFYEWFNKILPLLNENAVIVMDNASDHSVKKDPCPVISWKKADIINWLENKGEVVDHIKIKSQLLERAQVLKPQY
EQYVIDELAKAANKTVVRLPPYHCELNPIELVWSSVKNYVRMNNTTYKLQDVRKLLEEGVERVTPDMWKNFITHVTKEED
KFWQIDVLSDELFDEQEFHVLTITGDTSSDFDSD
>Mariner-13_DBp_tp#DNA/TcMar-Mariner 177-1223  [Drosophila bipectinata]
MNKIEYRAVIRFLFLKEKSNDDIKKELDKVYKDSAPSFSTIKYWTAEFKRGRTSIFDDDRPGRPREVTTPEIVDKVHGMI
LDDRRIKLREIANALNISRERVGNILHEFLHMSKLSSRWVPRLLTMENKRNRLHIAKESLALLNANKNEFFRRFVTVDET
WIHHHTPESKEQSKQWISTGETAPKKAKIGLSANKVMATVFWDARGVIHVDYLEKGRTITGEYYSNLLGRFDSELKKKRP
HMAKKKVLFHQDNAPAHKSVVAMSKLCELHYEILPHPPYSPDLAPCDYYLFPNLKKWLGGKKFQSNEQVICETNAYFEDL
DKSYFMEGIGKLEDRWSKCIRLKGDYVEK
>Mariner-2_DEl_tp#DNA/TcMar-Mariner 162-1182 via tfasty with NAVIMAR1, 1 frameshift. [Drosophila elegans]
METGKEKIRYILQFFFDKGENASQAAENVNGVYGPNTVTANHAQFWFRRFRSGNFDVKDEARCGRPIVKNADKIMEIVES
DRHSSSKSIAQELNIAQKTVWNHLTKAGYTKKLDVWVPHELKKNLLDRISICESLLNRNKTDPFLKRMVTGDEKWVTYDN
VRRKRSWSKKDEPAQAVAKPGLTARKVLLCVWWDWQGIIYYELLPYGQTLNSVLYCQQLDRLKEAIAQKRPALANRKGIV
FHQDNARPHTSIATRQKLRELGWEVLLHPPYSPDIAPSYYHLFLSMSNDLDSVKLATREDCENRLAQFFANKDEGFYERG
IMKLPSKWQSIVEKNGAYLK
>Mariner_HB_tp#DNA/TcMar-Mariner 180-1201 wised with HSMAR1 [Heterorhabditis bacteriophora]
KLKVGKRQIRVIVLYELKLGSKAVETARNINQAFSEGIINKCIAQHCLRRLRNGDERFEDEEGRECSLVIDDNQLXAIVE
VEPCKTTREVVEELNVNXSAVVRHLHQVKKSTKLDKWVPQELNEYQKNRRYQICSRFCGNKNNLFLDCIVTCDENWILYD
NRRRSTQWLDHDEALKHFTKPKLHQKKGMVTVXWLASEVIHYNFLCPGETITTEEYCHEIDKVHQELQRLRPALVNRKGP
ILLHDNARPHVSQMTLQKLNELAYETLPYPVYSPDLSSTNYHFLKHFNNLLQEKVSNNKGVTQKAFEEFIGSRTLXFYAT
GINKLVCCWQKCVDYSGSYFD
>SMAR17#DNA/TcMar-Mariner 170-1189 via tfasty with BOTMAR1_tp, 2 frameshifts.  [Schmidtea mediterranea]
MSNFVPTKQHLREALLFCFNQKKTAAESFRVLQETYGEHAPTQQTCENWFKRFKSGDFDVSDKERSGQPKKFEDEELEAL
LKENSAQTEKELAKQLNVTQAAISKRLHAMKMIQKEGKWIPHELTEANIENRLMVCNSLLTRHRRWHFLHQIVTGDEKWI
YYDNPKRKKSWVHPGEPSTSTAKRNIHGSKVMLCIWWDQKEVVYYELLKPNETITAERYQQQLIDLNHALNEKRPIPANK
QRKVILLHDNARPHVAKQVKNTLEALKWEILPHAPYSPDCAPSDYYLFRSMQSALQDQHFRNHEEIKKWIASKDKQFFRG
IHKLPERWSKVIVNDGKYYD
>Oamar1_tp#DNA/TcMar-Mariner 119-1144 via tfasty with Acmar, 8 frameshifts and 5 stopcodons. [Ruminantia]
MHLKKTSKLVNFCIAILLLKMEEKKQNFQHIMLYYFKKDNQNAKSICEVYGEGAATDQACQSMFVKFRAGDFLLDDAPQL
DIPVEVDSDQIEMIENNRCYTTREIADILKISKxNLENHLHHLSYVNHFDVxVPHKQKNNNNKKKHNLDHICACSSLLKx
SENTLFLKTDFDxQWVRYNNVEWKKLxGEQNEPPPPKASLPLKKMCVWWDWKVILYYEFFWKNCSxLDQLKAALNEKHPE
LVNRKIIFHQDNARLHISLMTQHGWEFLIHLLYSDVASLDFFLYFSLQNYHNGKNFHSLEDCKVHLENFFAQKDKKFCEH
RIMTLPEKWQKVVEQKSDYVVW
>Mariner-1_BM#DNA/TcMar-Mariner 861-1862  [Bombyx mori]
MSESNEDIRYILKFYYKKGKKATQAVKKNCDVYGPSAVSVRVAQIWFKRFQSGNFDVKNARRSGRPITDKIDAIFEKVGQ
DRHISSYDVTEELGIDHKIVMAHLKKTGYTKKLTERNLMNRVLICDSLLRRNETEPFLKKLITGDEKWITYDKNVRERLW
SKAGQASQTLAKPGLTRNKVMLCVWWDWKGIIHYELLPPGRTIDSELYCEQLMRLKQEVERKRPELINRRGVVFHHDNAR
PHTSLATQQKLRELGWEVLMHPPYSPDLAPSDFYLFRSLQNSLGSVRLTSREDCQNQLSRYFDQKPQNFYSNGIMSLPTR
WQKVIEQNGTDIL
>Mariner1_BT#DNA/TcMar-Mariner 178-1203 [Bos taurus]
MEEKKQHFRHIMLYYFKKGKNATETQKKICAVYGEGAVTDRTCQKWFAKFRAGDFSLDDAPRSGRPVEVDSDQIETLIEN
NQRYTTREIADILKISKSSVENHLHQLGYVNRFDVWVPHKLSEKNLLDRISACDSLLKRNENVPFLKQIVTGDEKWILYN
NVERKRSWGKRNEPPPTTPKAGLHPKKVMLCIWWDWKGVLYYELLPENQTINSNKYCSQLDQLKAALDEKRPELVNRKRI
IFHQDNARPHVSLMTRQKLLQLGWEVLIHPPYSPDIAPSDFHLFRSLQNSLNGKNFNSLEDCKRHLEQFFAQKDKKFWED
GIMKLPEKWQKVVEQNGEYVVQ
>MAR_CE_tp#DNA/TcMar-Mariner 165-1167 wised with Mariner4_CB [Caenorhabditis elegans]
MYVPSxIHIRHGLMYLFLSHTTMKDSESLLKNVYDSHVPYYNIIHNWFxRFEKDDFSLEDXRPHKLDLDTLQKAVATDPF
QTTRELSTTLGSCQTNxVRGxEAxGIKKIMGRFIPHTLTQANLDFXVDDSFSLLILHGADRWLGRLITGNEKWVLYDNNH
xRxQWIGEGETPQDAAKPDLHPKKGMLSVWWGVYGPIYWELLPEGKIITGDIYVIXPRNLKKVxDRSPLxDKQLYFQQNN
ASPHVSKQVxxELAxHGWMVLLHPPYSPDIAPSEYWSFSDMTRVLGxRTFNTHESVKVALKHYFDSRPEGFxKQGIHKLP
TRWQYIVDNDSKXN
>Mariner5_CE_tp#DNA/TcMar-Mariner 165-1175 wised with Mariner4_CB [Caenorhabditis elegans]
MSVPTSILVRHVLLYMLLAHTTMKDSKTLLMKVYDGPAPSYKTIQKWFDRFEKSDFSXIEKVCSXRPHELDLNALKASIA
SDPFQITRELASTFGVSHNSIPDNMKLLGMRKILRRFLPHYLTRSNLFHQVDVSXTLLTLXAGDRWLGWLIIENEKWVLY
ANHHRQAQWIGEGQTAQDVPKLGLHPKKSMLSVWSGVDGPXYWELLPEGETITVETHSRQLRNLRETVDRSALQDKKVYF
QHNNAQPHVAKHVKEELAKCGWPILPQPPYSPDISPSDYWLLSNLTCALRGRTFTTRENLQTDIELYFESLPAGFYRQGI
HKLTECWQDIVEHDGAYN
>Mariner24_CB_tp#DNA/TcMar-Mariner 250-1174 wised with Mariner3_CE  [Caenorhabditis briggsae]
CKMLDVDLISRTTIEIWFKRFEXENYDLDHKPIPKRPSLNKNENILMILEEKLCATLRALSLTAHHPNSTVTDHVPQTGR
ARRVDQIVPHILTNXRKRSDXDLSVSLLSRKPTTDWVNKTIIGDDERVLYVNNASKHLWLSAKETVESVSKGNLQEKXQI
FPIRLDSAEVKYRKLLPDSYVINFXLYCFQMESGIYAHRSHLXRGSVLKFLHDNEKPHKYSKSRYKLHLLGIEVLHCPSY
TADLALANYYHIRFLQNRLAGEKVHDRKDVKKFLEHCFASKSPEFYANGIAQLPLRWQEVMNSNGEIIS
>Mariner6_CB_tp#DNA/TcMar-Mariner 177-1175 wised with Mariner4_CB  [Caenorhabditis briggsae]
LLVLIRLHIRNMIIFLFLFGLQTPGIRKXIVDVYKGHVPSSPTICLWFEKFRTGEFSLKDAXRPSELDLDQLLKAVEADP
FQTTCKMSKALSVSQPSIVNGLKSLGKVKXLGRFVPHVLKDYDMDRHVDMSMFLLSFLRTFSWVDDLITVDDKWVSYSIN
VRKGQLIDKEQLALDVPEPKFPVKMGMLXFXWSVKGMEXWELLDEGTTITAALYSSXLEKLNLAVESKRGEKTKVCFQRD
NARSPVTRGISQKFMSFGXTILLHSSYSPDLALSDKWSFGALKRHLDRKYFNXKDDTKKELTHFFXSQPSSFWADGIKKL
PERCQTTIDAHGRY
>Uribo2_HM#DNA/PiggyBac (GenBank ref|XP_002168942.1|) (two (80 AA & 30 AA internal deletions)  [Hydra magnipapillata]
MTSSSCLRQKKISNIDEILNFVLEESDKDSNQSINLGDSDFSNDEDDNLIEFEVENSMTSTNIQRKVQVTNKNNVDKLEA
AVPFSNSILPSINYTEKPTYRGGGIRRVRVRGGTGIQCNNKIISVKNDADPIHANNREPIADDAAFNVNILDNVLQEGLN
VRMGKNPTCLDFFELYFPDELITLLVAETNRYARQFFAANPDNSSLWEETNVAEIKTFIAVILFMGVIYKPKLSMYWSKD
ALYNTPIFSEVISRNRFNILLKFFHFNNNEDENYDVTDENRDRLHKVRPVINILRNQFKTVYKPGKNLSVDESLVFYKGR
LHFRQYIKTKRARFGIKLYELATSEVIILDFLVYCGKGMFADDDINDQMPSSARIPSVLMEPFMGQGHTLYTDNYYTSTT
LANIQKPICVKEYNGHISGVDRVDQQLQSLHLLRKTYKWYRKLALRLISQDYLHDIIKVIFLSSPKLNKSLVPDGTIHRL
TGRHFPGTKQPSHDATDRRPSKLCRVCYARRIFNNNGKPLKTVHICKTCPGEPGQHIDSCFEIYHTVLDLV
>PiggyBac-15_SM#DNA/PiggyBac 446-2156 via tfasty with AvPB2_tp, 1 frameshift. [Schmidtea]
MSKQTRQYKFLEDINNIGEEFSQIGEDEFSENEDILVSNESELDSIDTDDEKENTVNICCGRKRIRLLSSFEESEVEINK
QHVANDGSVWEEIKVGGTPGRIPLHNIFRQEVGPTGYAKRHIMKGNVSTAFSLIIDHRIMNHIRSCTIEEAKRVLGSDWS
LSQEKLDAFIAILYARAAYGANNLNISFLWNNIWGPNFFSETMSRNNFTEILRFIRFDKKSQRSQRLKTDKFAMVSTIWN
IFIENSQNSYKPGGNITIDEQLFPTKVRCRFTQYMPNKPDKFGIKFWLASDVDSKYVINAFPYLGKDENRPSSVQLSEYV
VLKLMESFTGCGRTVTTDNFFTSKSLATQLLAKNTTLVGTIRSNKRELPLIAKQKKDDMERFSSKIFTTDNCTLTIYKSK
PNKKVLLLSSKHKFVTVENNDKRLPETVSYYNKTKFGVDMTDQMARKFTTKSKSCRWPLQVFFNILDLAGINAWILYKQT
TGENISRQDFLLKLAVELGADFREAREQPKKRTTTKDSLPKSTTDASQRKRCQIGYCKENKTNKICSKCKKYVCGKCTMD
TLICKKCDEQ
>Uribo3_HM#DNA/PiggyBac (GenBank ref|XP_002168582.1|)  [Hydra magnipapillata]
MVVRRKRIKKRRTRKVKQRARGLTDYVTPQNVTNVLKVDFSSDGDVDVGDVGGNVLDEWLFVLEDENGPNVVHFTGESGP
KHSISPESKPIEYVDLFFTTEFLQNIVNFTNNYADTWIQNNQQHLRSHPTSRGHGWIKQGKTNLLEIRAFLGVIINMGLI
KKANLKLYWDISHPCASTPWFVTHFNRDRFQLLLKFLHFTDIHIPNQQPLNKIYKIQFLVEHFNNKFLYYYYPQKDISID
ESMVGYKGKTPHLRQYMPNKRHSRFGIKLWCVSDSTNGYLCQFEIYKGGKDPDVAAIAYGMTYSLVFRLLRQTNFLHQGH
HLGIDNYYTSPQLLLDLYAHQTTATGTVRVNRKGLPETCIKSKLKNKEVCQYRKGPLLCVAYQDGKKKPILLSTVAKAGF
TEMRNRRGNIVMKPNVVALYNKTMGGVDLGDAQLYVYLSERRTIKWTTKVAFSLFGRAILNSYLLYKLNTNEQKPMSRID
FMMAIVESLAGGYFPVKVISKRRTSREIELARSTIVPYPLPQHTASSNPLYGHNLVKVGAGKKIKCVAGHQSRVRTSWQC
QLCGVGLCPACFSNYHTTVVH
>Sola1-1_AC#DNA/Sola 1262-3322 Sola1-2_AC broken and almost identical. [Aplysia californica]
MINTSLRMRTRLLGVGDVDDSDTDPSFKPGKCEVKKCKTEVFAACTSCLVLLCYDHFLEDPESCSQHEKTWQSTNTESIT
HNDFETDETQSSNERLPESFEVEGSARQASPKKRKRINKKNDAKRKRQSGEEYVSAGTKKVVPARMMRKGCVGMECTRAG
RQCSGITETDRREIFQDFYKLADLQKEREFVARHIETTEPKVGKPNSRRSKTHAYYLTVNGKRLKVCRNTFLATLSISEK
FVRVVLSKITETGVVEEDKRGGRQSEQKKTREEQNREKISRHIDRFPRVESHYCRASSSKEYLSADLTLSKMHDMFVKEN
PYNDISSFYTYRRVFKTKSLAFHSPKKDQCSLCNSFRKGDEAQKNELREIYNRHEAEKQKVRQLKEDCKKMAQADHSILA
GNFDLQQVIYLPISHEDALFYKRRLSNFNLTFYNLGDHTCDCFIWHEGQSRRGSSEISTAVCTALREYDQRGIKTAYLFA
DGCPGQNKNTIMPTMMLHMINTSAHTEELSLRYFESFHGQCKGDSAHSAISTALGNAGDVFLPSQLFPIIALARRKQPYK
VHPLEHGDFLNYKKLSEDLKVLNIRKDNQDSGVPVNWNKVMEVRVNKAHPTTIFFLNSHLEEQYRSISLKRQLSHLIHCE
VKQLNEEPNKISKEKYGDLMSLCSGNTPVIRNAEHKAFFCQLPHSE
>Sola1-1_AA#DNA/Sola 812-2653 [Aedes aegypti]
ESPSKKRKKNKQSWKNVQRKKAKEKGQAYTSTTGQHKRARSVGDPCSCKRLKCTENFSTEARDLILAEFLTLKSSGQNQF
LINNIDSQEKVRYTTAGPSRRQYSVKYFLPTTSGRLQVCRGMFLKTLDVSERKIRSLLGKQRTSAAAICSEDGRSGNRSR
LETSDDSKEIVRRHIRQFPAYTSHYTREKSKKKYLSSDLTIRKMFDLYKVWCVGENVVPVQENVYRKIFTEDFNLSFRKP
RTDTCNRCDQFNVLIKNAENDDDKHDLERQRDEHQAWATKMYKKKDKDKSVAKLFPNVRTMSFDLQKCLPTPYLTSGESY
YKRQLYTLNLTTYMTISSEQTKATCYLWHEGIAKRGSQEIGSCLYKELKLLPPEVDTLFCYSDCCRGQNVNFFICCMFSY
FIEECILAGRELSIIHRLLVPGHTHMEADTIHGAIEKAKKTTSIDIQIPKDWAQLIANIRRTNPIAVVEMDQGDFLAFKS
LDGTYYKRPKKNVDQIPVRFSDIVCFKYTTSSPGAVFYKYRTSSVFEKAVIKEQTAEPIPTLQPISTEPLMLPVEKLRDL
QDLQKFINPVNRAFYDTFLSNLQPKKKGRKPKVTKVVDHFEADLSDFEESSNEN
>PiggyBac-12_SM#DNA/PiggyBac 347-2134 [Schmidtea]
MLLLIFIIDLFINFREISLKMSRFLNDEEIRLLAEIQNSDEEYKYSSDESEDTDHVSVNSYHSDAESEEELPIRQELPAA
PGNDNTHPPAKDHSVWYCFPQTTGRTPAHNIIRGSTNKVILPPGTTIEDPVDAFHLIFPDNLLSVITEMTNKEAIRVHAK
NQYKKQWKPVDNIEMGAFIGVLLTAGHLKSSDVSIDRLWSKKYGPPIFRAIMSKNRYHEICRFIRFDDKDSRHERRANDK
LAPIRDLWEQININLGKFYMPSCNLTVDEQLFGFDGKCPFKQYMPSKPEKYGIKTFWINDSQTGFPLGGIPYLGKEGSQR
AINLGEKIVEKLCIPYFGSNRNITIDNFFTSKQLALNMKSCGLTITGTLRKNKSFIPKNFHSNRSREEFSTIFGFTKSLT
LASYVPRKGRAVILLSTMHHSDTIVQENKRKPEIIIDYNKTKGGTDLMDKMLKTYTCKRKTNRWPVAFFTNILDISALAA
YLIYTNIYKNWNLKKNDRRNSFLEELSESLILPNLQRRQHQNLRNKDLKESISFINCSIGKKRENSTAPSTSSVKKSRKQ
CHLCETERRIFQCCIRCAQNTCNNHAKMICDKCLNQ
>piggyBac-2_DBp_tp#DNA/PiggyBac 606-2396  [Drosophila bipectinata]
MSRKGLTPSQIGSFFNSLDSEDDLEFSADDESDYYPNKEDFETTDDEDLENEVEHPSDLNVSSKDLNDVSSSSKNVQRRN
LLWRQRSLILNEDQLQFLTSAALPPELLELSQPIQFFSYLFPDKIFENISNETNLYIHQKDPNVNITFTPLDIQQFVGIV
MYMSISRLPKCALYWSASIGIPSIQNIMSQKIFETIRRNIHFNNNDNNLPLTDPRHDRLFKIRPLIQELNNNFGKVPKEQ
FLCVDEQICSTKARSLLKRYNPNKPHKWGFKIYVLSGNSGFCYKFEIDSGKENVVLLNEPDLGAASNCVVRLAREVPRHQ
NFRLYFDNYFNSLPLLKYLAESGILALGTIRKNRIPNFKSIENVHLKKNPRGTSVEYVVDYGGVDISCTSWVDNKIVSLA
SNYAGKVPTDTARRFNKTKKEYIQIERPFAVAQYNSYMGGVDLIDSIIGRYKILLRSKRWQVRIFYHLLDLTISNAWLLY
KRVLKANGYSGKILSSSGFRLDIAEVLTKVNTKTKLGKRSTVIENALQLKKQRGPTQNVPNQIVRQDQVGHWPNWADKRK
RCKFPNCAGYSQVVCNKCGVALCFNKRNNCFTNFHLN
>PiggyBac-1_XT#DNA/PiggyBac 1579-3372  [Xenopus (silurana) tropicalis]
MAKRFYSTEEAARYCMDSSSEEFSDSGSEYVPSDHSTEESEIEDSDTVSAEVSSGGTLTAEEAEAGGSAQDVPMDVEEGE
GSTDAAVGEPAWGPPCNYVPEIPPFTAVPGLSVDTTNFEIIDFFNLYITEAILQDMVRYTNLYAEQYLASNPLPGFSRAQ
AWYPTNINEIKRFLALTLAMGLVERNSLASYWDTNTVLSIPLFSAVMPRNRYQILLRFLHFNDNTTAVAPNEPGYDRLYK
LRPLIDSLSQRFAEVYTPSQNVCVDESLLLFKGRLKFRQYIPSKRSRYGMKFYKLCESSTGYTSYFMLYEGKDTNLDPPG
CPTDLTTSGKIVWELITPLLGRGYHLYVDNFYTSIPLFRALNSLDTPACGTVNRNRKGLPRELLDKKLKRGEVHALRSNE
LLAIKYSDTKVVLMLTTIHDETMIVQHRSGGRPSKTKPLCSKEYSKHMGGVDKSDQIQHYYNATRKTRAWYKKAAIYMIQ
MALYNSYVVYKAAVPGPRLSYYNYLLQLLPALLFGDVEEVPDMPGNDNVARMVGKHFIAQIPPTPNKRYAQRKCKVCRSK
GVRRDVRYYCPKCPSKPALCFHPCFEVYHTVVHYERT
>piggyBac-3_DBp_tp#DNA/PiggyBac 408-2109 Fragment via tfasty with PiggyBac-2_HM, 1 frameshift. [Drosophila bipectinata]
TGVELINKVPTKVTWRQQSMQLHVNDIAFRGDSSLPDSIKELATPLQIFCYFFDSQIMNMIVEETIRSALTKNINNQFKF
SIDDAHHYIGILIYMSIYRYPNIKSYWGINAFRPIKHTMSRNKFEEIKKYFSLRDESKRIQKGEPGYDSLYRTRTFLDHL
NQRFDSVPKQARLCVDEQMCSTKMRHHLRQYMPNKPHKWGIKLFVLCDSFGYAYRFEIYSGAGDNVILPAHPDLGPSANI
VVRLTKTVESFKNYIIYFDNFYTSLPLMVYLRAKGIYSLGTVRVNRIPNCKLPNDISIRKQPRGFSTEYVGSSYGIDITN
VLWKDNKAVCLLSTYVGIKPFLKLNANEGIAKIARYDKKSKRHIEVDCPQIIREYNAHMGGVDLMDGLMGRYHIRAKTQD
AMTRIFYHLVDMAATNAYVLYRRIKKENKSTDKLLELPEFRESIAAGLVAYQSKRKRGRTFRDYDRKFPSPSSQRIAQPG
WTMQSPSTPRSSKPSLTVGEKSKHPVSDVRFDEVNHFPVWMSRDSGKRWCKHCKKSQTQCMCTKCNLHLCCTANKNCFFE
YHNQKLE
>PiggyBac-6_SM#DNA/PiggyBac 508-2241 [Schmidtea]
MAKRIKLTDGEILRALEESSEDEVEIEDNSEEMIENDLSGSETDVLETASETSDEMFISEDSEESDNENQYISYIGKDGT
EWNSVPYIKGRTAAHNIIRGGINKVVLPPGKHIDCSLDAFSLFFNDNIINIIVKFTNLHGRTVLGKNWKETDQMEILAYI
GLLIDAGLKKQGLFDYDEFWDPLFGCTIYRACMSKNRFAALSRHLRFDDLLSRSARRDQDRFAPIRDIWDLVNKNLRKYY
IPGENLTIDEQLVPFRGRVKFRQYMPSKPDKYGMKIWWICDSKTSYPLFGIPYLGQEQAGRAVNLARTIVEQLCEPFERT
NRNITFDNYFTSYELANSLLSKGLTCVGTLRKNKRCIPQNFLPHRTREVESNVFGFRRTMTLVSYVPKKNRAVVLLSTMH
HTSEVDNTNKNKSEINLYYNSTKGGVDTLDQKCHAFSVKRKTRRWPIAQFYNLVDVCGVAAEIIWKNLYPDWNKTKMNSR
RKIFLKNLVQELVIPNIKRRSVKHLPKSTIATINETLENSSNIVVIDKSVPETNIRRRCYLCPSAKGRASKQCCGNCGKN
VCNEHSQKIVVCKTCLNK
>PiggyBac-3_SM#DNA/PiggyBac 369-2087 [Schmidtea]
MAGINPKLFYGKRKKVVDSSDSEEADFDRSDSDEYIPSISSTDVDDVDVSDVSVSDDCSDIPTPTITRNVWNTVSGNTLH
KFTLTAVAASPGISHLDTSSIKPIDIFNIMVSSDIYDLIVQQTNLNAYKKISNSRISRSSRMKKWTDTNVSEIKRFLGIV
MYMGIVTYPTIDMYWSKDNFYLNSFVPRQMSRNRFQLLLKFIHFADDDTIQNNRLGKVAYLLELLEKFFIAAKIPGELLV
VDESMIPWRGRLMFRQYNPGKAHKYGVKVYKLCDPIGYTYTSEIYCGKTDDSARRGRPTPGVTHSTQIVLDLAAPYLNNG
RTVVTDNFYTSRSLANALITQQTHLLGTLRKNRIGNPTEVTNAKLRKHEVIGRENSGIVVAKWRDKREVLMLSTKHDLTE
VRTGKTNRNNEDIIKLQMIIDYNFAKSGIDLSDQMASYFTPLRRTIRWYHKIAFEYLLSTAVVNALILYKLSKPNIKIAE
FRKSICESLCETSISSVSVVVQRPPARRHLIQTYTTRDNRNRIIRKRCVECYKQLQQQKGREEATKKTKRVTTFCSGCED
NPPLCTNCFNKLH
>Sola1-1_CS#DNA/Sola 1039-3046 Via genewise with Sola1-1_BM, 2 introns (1339:1432, 1588:1773) [Ciona savignyi]
MSFQDATVKLKRNKRPAPDTWNHNTCIKGRLMGKAYKNRKGVEKPPREMGPLCTSNFCKKSQLRECQTINEDQRNWIFNN
FFEMGSWDERRAYVRALVSKVNIKQKKVLDTISRRKSSYVYRMKLEDGTSVQVCLPFFASTLGLAQRTVKSWLPPKTPCY
ITTYHYLFYPGKTAYVEKEDLDFLKQWLAGLPSLPSHYCRSSLTYKNKKFLYPGTTIAKLHIEYQIAAETVGNRAVGGTK
FNEIFHQQNYSVFIPRKDQCDVCVSAKLGNLDNEIYLAHVLAKDEARKEKEEDKKAANEEKMVWTMDMQAVLLCPRTKAS
AAYYKTKLQVHNFTLYDLQTKEGFCYLWEEHEGDLSSEVFAFLQYTHFERIIQERPGVKEVIIWSDGCGYQNRNLTVSNA
YLELARKCNVKITQKYLVAGHTQMEVDSMHSTIERNIAGDIYTPRDYFVIMQSARIRPTPYNVKQIFHNDFKKLTGCYMK
SIRPGKKCGDPTVHDLRALEYNSNGTVRFKLKFSADWEVLPQRIRITQEPFEWVQVFDGPKPLTYRKFTDLQSMKMVFPL
CTHHYFDSLPHSNPA
>Sola3-1_CR#DNA/Sola 1782-4405 Via genewise with Sola3-3_BF, 3 introns (2330:2371, 2498:2542, 2853:2895), large deletion at around pos 3600. [Caenorhabditis remanei]
MFPFTALCRSHENYIRDLMSKPRPPPTKKSRTSSESDSCSSEDPPYASSEESITQKKEITLAESFSQFAMLAGETKVCTV
KPWNQLKHLTQEKKARTARNLFLTMLGIMVPDDTEEFKKLVERKTFVGKQWSTGSSASFEAVMEQLAVQFFAAECRRSRL
LVLSFVTNSVSYLEMVKYIPHLSRYMYESSKIFGRRKRSENAVKERQLVRYDHKKVQAFIDFITSPTVMIGLPYGVRNVK
LSDGTKMEIPNSIRQQSATEVIEMWKNVCMVRIHEQMIGTYTNLVIQDNDQPDLLLSVSTMYKILEACVATKRESTTCVD
YFIAYGMQGFEDMHRVVDGWLAEELFSQSLTQLKTALFEVAQYYRTDYRLHIKSQSRVADHCASFALSDPSDKRLSSPCS
SDPHKHSHDLKCDRCQHVNSTLEKLRDYAEEFLLDSREALKTADESTKQNIQAILERREDDKKVIERSIAYVHEMKKHLL
RAAFTSQEREKIISGLKDNEALVTLDFAQKFLPKFHRELQSQYYGKKGVSYHISHVVAKIGDRLVQHSFVHVYSGPVTQV
LTLxxxKTSSCVDEPDTVSETIEDDVPEQNVGELYSCPEPGCSSTFLKYFNLEKHILKAQHKIAPERMTERDFALNLFAR
RLEDVNESRTFPAIETALKELKETKEDKHVKQGWGLPEKRTRKAFGEDVKKFLIECFDVGFNTGRPLNPFSVARKMRTER
KHDGSKRFLEEEILDVRQIAGFFYRESEKRQPQETPQNRRKRWWKRPSPHRRRRDNEHEKPAALDIEDQHDDSEWISFLK
SEVFWTLEDEFYNATLKSFDPIFEFEEIEMKS
>Sola3-1_ADi#DNA/Sola 1319-6932 via genewise with Sola3-3_BF, 3 introns (1725:1961, 2006:3050, 5635:6420), 1 stopcodon [Acropora digitifera]
MSCSFxTVDSVCGPTPYAPNExHVIPLKLCRKDLTDYLTNLGVSGSRGFGTRINEADVILNRAGLRSLSEGERERITVCP
KHRYELTTRYQKLKSSCSHPSHRGEVKKLKNPRRVNERVSEEIYQEFQVSVPIGSVLCNTCRKGHSSRLKDEVENTGKED
SDLTKKESPANECSGFNSSELAFEDNLNLSYSASSEFECTLNSTVTDLKEEDEEISFWVDKEQHQQEKRAVLNEALAHIS
DGRVSPIASTLNSNWESISSTQKAYYLRXVGQVLSEVLTTITPEQEEKVLEALRRSLDPTLAKKGNESGACAVKEEVTAN
QLSILLEVYHEGENGQTRLQILSMFAKHFSKKExxEMIPGLSKWQIDQARRHAAEEGPGQxxVSEPIKRTRLDPVKANHF
xSFIAxGNFIQDVAYGTKELKVDSGEKIxIPNVIRTMVPSRIIKQxISYCRETEFKPASxRTLYRIIDVCAASRQKSLQG
LDYFSTEGAQAxESVERVIMMLEEGGATxIWGKEAKAILKExKxYLKTDFKSHVGPEERCVDHCTGFSLSDPNNDAFAQH
CDHTHDMCCxSWSQLGEVLSNVMSMIxxPKLTLTDEQQxQVTFDVTHAVETIANWKADMLRTVNQEQAKQETLGALNDQS
VPVVMDWAMKYLPQRYREQMSDFYGKRGRSWHVACVVFKIGENKFNVETIVDIFDSCIQDWFSVASIVEHVLVTIKQEHP
NVKMAYLKSDNAGCYHNASLILSLKSIGERAGISVRRYDFSDPQSGKDVCDRKIAPMKGHIQRWVNEKHDVVTAVDMKEA
LESYGGVRGCRIAVAEVDVAKAAKPEEWKGISALFNFEFLASGIRAWKAYGVGEGQMFPYDEVGRSLKGPTGLHIIMPLT
SLTPPSKPGLLMVKAKHTNLQDLFVCQEEGCVATFRTQRDLQGHMDTGRHVRVTERETVYDLARKEWAxKVTGIQSTHVG
QTGHARASSPSMSTRKAPLQGWALKRQRKGGRATENVKRFLLEKFNKGVTTGNKEDPAKAAKETRVARDESGKLCFAPEE
WRTAKQIASYFSxLAATQRQQKAPRELLVEQDEAISEEDLQAWxTERQLQELQTAVYEEVDLKHPIEYNGHDIRGLAKRG
MLKSKFKVAQLKEICVLFGIEIEGPAGRKDSYVKPLEDLVQACSCFKERLEVSVRKQDAYLA
>23128385_NP#DNA/TcMar gi|23128385|ref|ZP_00110234.1| COG3335: Transposase and inactivated derivatives. Named IsAn1 in Biondi et al, as if it is in an Anabaena species. [Nostoc punctiforme PCC 73102]
MPPPAKNFLTTEQVSKLQQALKESELPHVRERILIILLQNDGKPQQETAKFLGCSRRTVAYWCMHGDPDDLETLHNKREY
EHYRKATPEYIELLLKTVDQEPSDLGYDFGRWTAERLATYLTQKTGIDLSSSQLRRILKRKKYSYIWAKYDLEDKQNPIE
RAKFKEKLTQYLSIAREQPERFQVWFWDVSVAGARTRATSGFSLRVIRCKGWGKKGKRKNVPGERRCGRVNVMGAIRELD
RKRVCFFVKKGNADIFYEQLQQLNGLIKQEWVSIGNRFEDFAKSGPKIILILDNASFHKRKDVLTKISQEFPNFVLEFLP
AYSPDYNIIELVWHSCKEYIAHRLFKLVDELKSLLDKLLNQGELVIKWHRKIRNKGNIHYVAA
>Aot1_AO_tp#DNA/TcMar-Ant1 gi|27543874|dbj|BAC54731.1| putative transposase  [Aspergillus oryzae]
MAPNLAPSQHQIICDMIKCDPSLTNAQIAEAANCSTRAIPRIRSNLRLFGSSKAPPNKGGRPRSISPIMLEALCDHLLEK
PDLYLDEMAIFVWHEFQIYATTSRIRRALSSKGWSKKAARQKAKERNSDLRDMYFHLISDFHSYQLVYVDESGCDKRAGF
RRTGWSPLGTTPIQVSKFHRDQRYQILPAYSQDGIILSRIFRGATDTSVFEDFIEELLLQCGKWPEPRSVIVMDNASFHY
SERIDQMCLEAGVKLVYLPPYSPDLNPIEEFFAELKAFIRRHWSVYEDSPEQGFDTFLEWCIDVVGARKQSAKGHFRHAG
LTVEES
>Tec2_MC_tp#DNA/TcMar gi|1216295|gb|AAA91339.1| ORF1 [Moneuplotes crassus]
MVEATSMLEEEAKKYEKIIEEEPNEQDILPSLSDNQDEEIIVTLEYYEAFIQKGVKLKRRSWPFKNKDMIKFSQNRIIVE
KMLLENNQSLEEVAKWLRLPLKRLKICIDKYFRWKKLNEAKSLQKKRDKVDRLCNLKRLFEIYIANKKGRCVTVKSIKDF
ANSKSKENEDIPSYSYDEVRSCLKNTLGYSWQRSNTRPPSSLRSHLKDDKEIFKSFIRLLEKCHYTIVYIDECSFNASAL
PLYTWNKIGDEPVKLIRSTNQRFNCIAAQVEQHKIFHIKTETTKDQNFITFLEKLNSLLKTMIAKKQLMKRTVYVFDNAS
IHSTEKVVKAITGMKMVCFTIPPYSPELNKIEHTFGTLKRNLSRENLANKEFLHNIKMAISRV
>Sola3-1_AA#DNA/Sola 1279-4330 Via Genewise with Sola3-3_HM, 1 stopcodon and 1 intron (3239:3350) [Aedes aegypti]
MAEMAKCALENISECGQYLPKSDDKYYSAEELASTKVIDLFPKLANDKFFFDYSEKWLIEHRSGIKLQDKDSICAKHRYS
FGEKWKPLKRCYHPDHLQNPTSAKRMKVLGVRPCKSHHFKYISKHDPTFPLFAPLCRLHEKTEDISVKADETDTPENDEV
SFDQPSDLKLLNSVLSLLGVPNIRATIDTSIENLSKKFLDSKRQKIEFALEKIKNLFVTIAPGQEEKYKKLLSSHEDDNS
TRQGELKAYRKLYDAETSDNRKLRVLSNIDKERFSRREIEDQLGCSRSSTSKARKMQTSNESSNEANNSVSKQRLDIEKC
KHFLLWLYESGSLGDLAYGTTMVRYSSGYKMHIPKPILTGLRSHTIANYIDFCHNTNTDALSRTSLFKILNLLKPSQRHS
LAGLDNHMVAGTEGFEVLKRLCEKFFEDDKGILSDLTAIQRYIKGPFANNCSKNSKTASHCTVFGLSDTKNDHFAQKCDH
DHSQVCTSCAKIFQLFETISDKISIENDQNVKAEMMYDYENSKKAVLKWQQHILRHVQQNQAKLDAFSDIQTDHTKAVWI
RDWGQKVLPMKYREEQSSYFGKKGMSIHFDVFIFIDVETKKFNKAVFVTLLDNCKQNAVETLALIPGILAKFRSLYPDIC
SLFIRINNAGCYSANGVAESTFQLCKEAGIKLLRLDHNEPQKGKDQCDREAAVCKSYIRAYVNASNNTTTAADLKKGIMF
QGGPRNTYVGVLKIRDSxMSGVKNREGVQAIHSISFEFPFMTFWRYYDIGTGVKHRIQNINFNFNVDVISSYDKTANSQL
GLGTPSMKTQILDASKQSSIPKNSTTDAIYNFVSNLITTNDTRLQGQNDSQTAEENCEVVSEEFCTYFSKGWGVGSRENV
RFDVRVKQFMLELFSLGEKTGKKISPEDAHRAMRSKLDRITGIKEFQPKSYISVEQIKSLFARFSTLHRQNKLVLCDVSE
DSFLNVEEHHEYKLVISTI
>Sola1-7_AP#DNA/Sola 2428-4348 via genewise with Sola1-11_AP, 1 frameshift and 1 stopcodon. [Acyrthosiphon pisum]
IEESNDGIINQNTEVHNSSFDETIQIGKGGLRKSQKSNKRKIIGSGKTLQPNPCLSAKCQNKCVHKFSEDERKDIFTAFW
GLNSIQRQRDFIISCAIEIPIKRVRAKHGLSRRSITYEYFLSYNSESKKVCLQFLLKTLNVSQIFVRYTLQNKTNIDISP
NDRRGKGRPPNEVAIENMKNLDHFIQKLPAVPSHYCRASSIKKYLPAEFGNISRLYLVYMDFCKKNNHTVMSKSTFKTVF
TKKYNIGFHLPKKDKCNLCSKFDNIKLSSDLNEEQKIKEEKHLEEKEECRQMFLFDQQLSKAGGDFVCSSFDLQKVLNTP
MGPHMNLYYSRKYSYYNCSIYESGTCNAYAYLWGEIDGLRGCNEIVSCINQYLCDCNKNPKFKSISLYCDSCAGQNKNRA
MLFMIMSCLKKQWADLTEVKIVFLLPGHSYMPVDSIHATIERFINDKTIWAPSEWPPLIRNSRVNPKSIEVKEQQFxNFL
NWKKNADKVLPKVLKDTEKNIVKTSKIKYINFYRNPLQNDDVILEAFYSYNADAKGFIINIPKPTSEALYFPEQAYTSNL
SISKEKSKDLLKLCTDGIIPGKFHQEYINMTSNELVRDCIQETDEDDEVPPDEDAHKKTNKTKVVKKLKGKTKQLLLNTV
>Sola1-2_BM#DNA/Sola 958-2173 via tfasty with Sola1-7_AP, 1 frameshift. N terminal fragment missing [Bombyx mori]
YFKEDGRGKCIPPNKTSNAIKESVKSFIKRLPAIPSHYCRKDSTKLYLPVEFKNIKNLYRCYKEDLISKGVDVVSEKVFR
QIFTTDFNIGFHVSKKDKCIKCLRFEGQKPEDCAEFQDHLEEKKASKKRLECHRQLGKENPSILCTSFDLQKVLNTPHGN
NMLLFYSRKYAVYNLCFYESITRNGFCFIWGESEAKRGANEIATIIQKYIENVDSRGIITSLILYSDSCPGQNKNKIVLA
TIHNALLQSNNLQAIQMNYLLPGHTEMSVDSIHSTIEQSVRNITVWAPSQWATISQLARKEPAPYNVENLTHEDFLNFDD
MSEKYFKGNLVGKISKIRTATFKKSHPNQMKVKFSMKDNASEEIIQIIAKPRAINRRYNSSLPITKAKSNSLDLKKLCDT
GVIPG
>Sola2-1_NVi#DNA/Sola 1105-3015 via tfasty with Sola2-2_NVi, 2 frameshifts. [Nasonia vitripennis]
MPKRLHSDRCANPFKKPDEQGHIGKSLRLIPKSMLEEYPDLSEHSKVCSKCVKKFKDKTDGNNSMSLDESNDSTIHMETL
DDSATSLNDSADFDPEKDNREKSQREMELEEMLDGLKDKFSNLSNTDPLRLQILTIAPSTWSARKLAKEFGATRYLAAKA
KKIKSQQGILPNTTMKAGKNLPKNTIDEVFDFYTSDMNGRLTSSTKEFVSVNIEGERVNQQKRLLLLNLSDLYRLFKQSH
PDCDIGFSTFAKLRPKFCILPGASGTHSVCVCTIHQNVKLMLDAIDFKNLTKDTNLPLSDYRDCLKNMSCENPSPKCYID
QYDKCPGTTNILEHIRTLLDDKRISHVEYATWSGTDRSTLLKSVVKLDEFLTELDNKLKILKPHSFLSKQQSLFVKEKKE
NLKEIEVLVMFDFAENYCYVCQDASQAFHFNNDQCTVFPAIYYYKEDGELKHKSNVFLSNSKKHDTAAVYSIQQQLIPEI
KKKMKKVIYVSDGAKQHFKNKFQIANLIYHKQDFDVIAEWHYFTTAHGKSAYDGIGANFKREAYKASLTAKPNDALLTSE
ALFNWSRKHFQNINVFYFDEKYHAKMQRKLNRRFEAAKAVPEISKQHGFIVDDQRNVCIKRYSKEEGGIQWSMYADN
>Sola2-4_NVi#DNA/Sola 3095-4331 via tfasty with Sola2-1_NVi, one 165 AA internal gap. [Nasonia vitripennis]
SSLPPNDPLIVSILTIVPECWTLRDIESEFNVSLRIAKKARDLKDEFGILAIPDPKKAKSLPEITIKEVNKFYESDINSR
VMPNKKDVVKINENGETQYVPKRLLLCDIKVLYRTFKEECPQFPISFSKFAELRPKWCVLPVDDFMSELSLSLKKLIPYH
FIAKNQSKYIKDQKNNLQENEGLLEMDYSENFAYVVQDAAQQFHFNNDQCTINVAVLYYREDNETRHCSFIALSECTTHD
TAAVYILQEKIISEIKKRFPKMNKIIYVTDGAKQHYKNRYQMMNLVNHESDFQIMADWHFHATAHGKGSCDGVGAVLKRE
ATRTSLQAKATEAILNSKQLYDWARQKFQTITFFHYSKKDYEKTSRSLKKRFSAAPSVTKISEGHAFLVSPDKKITVFRY
SNAPSPLSIVQY
>Sola2-2_SP#DNA/Sola 1491-3710 [Strongylocentrotus purpuratus]
MPLSAAEKQRRYRERCKGKGSHEEMKAKDRVRKKEKRKSLSTAGLKALRREERERKRRVRANDDKGTPATTNNNEQSYKN
PQSLGKAVKRASQHLPLSPRKRSRVIKTLARKFAVPTEDSDYSQNGPTKVTDELCEAISTFYCRDDISWQSPNRKDVVIS
RKEDGTKEYIQKRFLIMTLKECHNLYLEENPDQSVGLSKFCSLRPCHVFLSRDFPHNVCICKYHENIKLLLECIDKSVAR
KIPTHFRDFIATVVCDQEKENCMFGKCSACRSKFDDTYCFPEEADDEAEWIQWITVEGKATKSIQRGTLSGCIKSIRQQL
PGFLIHTFIKRKQSAHFEREKDKADGRHIVVQVDFAENYSIIHQDEIQSGHWNHEQVTIFTGCANIGNGKVESFAIVSDD
LVHGKYQVATFLEHIIMELKKSCPEMETVSFFSDGAASQFKQRFLFENLTYFSEMYSIQTSWNFFATSHGKGSVDGIGGQ
IKRLVFTACKTGAFITDPKSFATEAKKHTKIKVMFVPATDVDARKDVLDARWANVSALPNTHNTHVVVPLRKHIVSYAVY
ATSDSYKEFELMKACKNTPPTGATGSSQAIEHDQDIEPPEPSTSGPSTSGPSTSQPSTSGPTPSSSELTSTELSSPGPSS
SPDKQPIPKLGDFVLVQYLGGNKLEKEFKYAAQVIRINDEDFHVMHLHKGDTKGLMFKAKDHTDKYAVVSQKQILEILPI
PVIDKRGRFHFPTTILEAN
>Copia38-PTR#LTR/Copia 54-4415 [Populus trichocarpa]
MTNLNPIVPVPQNSQTSPIIIHQDNSAFPTSIILDENNYPLWSQLMEMRIGARNKTGYLTGAAKKPEPEDPMFATWITES
QKVKSWLIDSMSPLLMQRFIRLSTAKEIWEAVSKTFYDGSDETRLFELNQKSFSIKQEGRPVSIYYNELVALFQEIDHRT
ASQGETVEGVVQLHSTMHRLRVHIFLSGLDFEFEQVRGEILRKDPKLDLESTYACIRREFQQRQTMGNYRTTSEHSVHSA
RFTNQPRQGPASGIMKNRNNSSAGKYTGLVCGHCGESGHSKQRCYEIIGYPEWWDFSKKPRKKFAGKAMMTTTEAQTTAA
DKLPAVDNLPPTVNVAHSSSTGKANTFSAITKDNNWIIDTGASDHMVRDTGQLQSLHSSTHSFISTANGSTSPTVGEGTV
ILTQNLTLNSVLVVPSLEHNLLSVGQITSALNCTVTFWSLFCVFQDILTRKILGYGVKRGKLYYLELTENGGKRFGQAHQ
TRSSDTDRATIWLWHRRLGHLSFGYLRKLQPHLFNVVHDSEFHCNICEMAKSHRITYLPSLNKSSEPFAVIHSDVWGPAK
ISTISKARYFVTFIDECTRMTWMSLLHKKSDVFTAFQEFHRMVGTQYQKQIRSWQTDNAMEFLDTSVQKYLHHYGIRHQT
SCTYTPQQNGLAERKNRQILEVVRASLFGMHMPRYYWGEAAKSAVYLINRTPSRVIDFQTPQQRMQSLLSTPHLPNLEPR
VFGCTAYVHIPKVLRTKLDPCATRCVFVGYSDLQKGYRCYDPHTQKLHVTLDVSFRETESFYSKEGSIISSQGEQSSNEH
LLQESDRNEFVELENIIEQFGSSGTNEKSQGRSSDEESQINIELPLLTPLTNESSQNAESQVLLQPISDESNIFPDISYA
QDVPPATAAPRCSQRSNKGVPKKQYEPDHRVNIQYPINNYVSNHRLSESYALTVNQLSNISIPSNVQEALTDPAWANAVN
EEMQALQKNSTWELVSLPEGKKTIGCRWVFTVKLKTDGSIDRYKARLVAKGYTQKYSVDYTETFAPVAKLDTIRILISIA
ASREWPLKQFDVKNAFLNGDLEEEVYMDLPPGVQCKSETRSKVCRLKKSLYGLKQSPRAWFGRFSSAMTAFNYKQSNADH
TLFIKHQNGKVTALIVYVDDMVLTGDDPEEMQLLQEHLAAAFEMKSLGQLRYFLGIEVARSAHGISMSQRKYVFDLLTET
GMLACKPAATPMDINHKLGVFPNQVPTDMGRYQRLVGRLIYLSHTRPDIAYVVSVVSQFMHAPSEEHLQAVNRILQYLKG
TPGKGLLFSKHGVSSIEGYTDADWAGDQTTRKSTSGYFTFVNGNLVTWRSKKQKVVARSSTEAEFRGMAHGVCELLWIQR
VLTELGIHYTDPMTLHCDNKAAISIAHNPVQHDRTKHVEIDRHFIKEKLDQKLIQFPFVQSAYQLADILTKAVSGPAFQR
VITKLGMTDIYAPT
>BEL-10_DAn#LTR/Pao 129-5346  [Drosophila ananassae]
MESGAEATASAASSRERMLRRRAEVTCQEMEVLHRKVKAAMQTEDSTILTLESMEKRLRDRFTTLQEELEELNYSEIGSD
LYWRFSQLATDVHVDIQVEVAKRSMRVAAHSTLLDATNGAGISNAPYRPAPSLPPLPMPTFSGGYAEWPDFCALFRTTID
SHPHLTNMEKLRWLISCLRDSALETVRALEITDANYEVALDLLRNRFSNRRLIFQSHINEILQLRTVEPGSVATLRELSD
RFNGHMRALMSSGTSAEIQGCLLIQIIFQKLDPATKAKWEDSLAGNTDDSLPTWESMARFLEQRCRTLETVDLALAPHLS
ANQAGRRRPFNNRSCMLLNAPPASCALCGNLAHAVPSCPRFLALSVEERYDEVRRLALCFVCLKSDHLARGCSSSRCPTC
HRRHHALLHPCERLASATSVPASGSNPANVAGVATSQAPPANALIAQDRRAEIVFLPTANILVRGRSGAFLPCRALLDSG
SQVHLITSRLASQLQLHRSKCSVAVTGLGDAEFITDRASVNVCLKSRLSTYSVYIEAIVASHIIERQPGLNLDVSNWKVP
ANVVLADPDFHRAQRVDLLIGASLFFDLLSVGQIQLGDGLPLLQKTRFGWVVSGGGCTPGNPRLAASCKMISADSATSFD
DRLDYLLRQFWEVDACTAPIVQATKEELDCEAHFVMHHVRLESGAYSVRLPIKHSVDLLGESYAQALRRFHSLERKLDRH
PNLRTQYSSFIKEYLDLGHMSLVPQELRGKCQYFLPHHCVLKEESSTTKLRVVFDGSAATASGYSLNDVLMSGPVIQPKL
FHTLLRFRSHLVALTGDICKMYRCVRVFPDDSLLQCILWRDSIHDDVKVFKLDTVTYGTKPASFLSIRSMHQLAKDEGAG
FPVGSRVVLQDFYVDDLISGAPTKTEALEIIAQTSSLLSKGQFQLRKWCSNIPEVLEGVPESDRESYLKFDDGSPFTKTL
GLAWDPSADLLLFSFEALQPTAKPTRRSILSSVARFYDPMGLVGPVVTRAKILLQKLCRENLSWDESLPQSLLSEWLQFC
SSFDQIQRIKFPRLVIPCQERLEVHGFCDASLDAYGACVYVLSGSDCRLLCSKSRVAPIKTQTIPKLELCGAELLARLMA
EVADLGTYKGDYYCWCDSLVALSWIQDEPARFNVFVSNRVSSIQELTKAMKWLYVPTAVNPADLLSRGSLPTELLNSQLW
SQGPPFLRGSKDDWPIAVVAEKAAIELRARTLLATAPPRDIAALSKFANSFPSLQRVFAYVFKFCRRIRHEGISVQDLKG
GTHLLLRAVQLAEFKEEISLLKSRRLVPPSNPLASLAPFVDNDGLLRVDGRLRNSALDFDGRHPIILPRGHPVTSAIVTH
FHEKNLHSGPRALVAKIRSQYWPIGGRKTVSRVVNKCVRCFRAKPRLLEHVMADLPTERVAGFQCFDVSGVDFCGPFFYK
AETRNKGPIKCYVSVFICFSTKAIHLELVKDLSTASFLSALQRFICTRRKPRQIWSDNATNFVGAKNELMELKQRFLSQE
HQASLHDFCLSESIEWRFIPPRSPHFGGLWEAAVKTAKHHLYRAVGPAVLGFEELRTLLCRIASIINSRPLVSISENPAD
LDVLTPAHFLNGGPPSTFIEPDLTALNFNRLDGWQRVSFLQQVFWARWKEEYLTLLQQRSKWRTPGPVIAVGDIVLVKDE
NLPPMKWPLARILELVPGRDGVHRVAVLKTAVGVTKRAVSRLCLLPVKDSVEDSAFNGGR
>BEL-8_NV#LTR/Pao 16-4344 via tfasty with BEL-4_NV, 3 frameshifts and 3 stopcodons. [Nematostella vectensis]
MLSVIERKMSADDRKVWSRELERDKKTATLEGLLQWMTSEMKSRMRATAAVRSGNTTYRGGVYQFKADEQENPRFKCWHC
KNSEHWPDQCPKFAALTYEKRMKTAKENHVCFSCLKVAGRNHKASTCSRKKVCNKSENGEHCQAFHHPLLHKTIPVSVGT
ALESENTSVILPVLTANIHGKNGLQKQANVLLDTGAQISLIRNDTADLLGLVGKDTYITITKVGGEDESMKTKVYKVPVC
SNGRSKTYTVKAIGIDKISDDVKAVEMKSIAKHLGLENERIPVEKGRVDLLIGIDHAQLHTGPSKQSDKLVARNTPLGWV
VFGGSAADTEGVSQVYHVALAPQLDLATFWKTESMGVEVKPCVCEADKLSQVEREETEVISNSCRKVGNQWEIPYPWKKD
PSQLPDNKPAAVKRLEATERRLLKNPDHAVAYNKQMEEMCEMNFARKLTEEEVKSYQGPVHYISHHGVARPESDSTPLRI
VFNTSATYQGHALNDYWMKGPDLLNDLFGVLLRFREGQCAVIGDLSKMYHRILIPEADQHVHRYLWRNLETERPPDVFVK
TVLTFGDKPAPAMAQIALRKTAEEGEKEYPEAAKVLKEDTYMDDICXSEETPGKVQKLVKDLDKVXQNGGFHVKKWTTSR
SAKATTPPSxTCXRQNTREKVLGIAWDSKTDVLRFKVQKQSHSTSDGKEKGPWTKRKILSRVARLYDPIGYTAAVVIKAK
IGIQKLWQLGYEWDQPXEPPLAQTWEAFFTDLDELNKXELPXCLTPPNAVGLPTLCIFSDASREAFGAVAYLRWQPSVGS
YEVRFVAAKSRVAPLKELTIPRLELQAAVLAARLHQTLQEELRIECEKAILFTDSMIVYXXVRGPPRSFKPFVSARISEI
QDKTDPNQWRHIPGSANVADDVSRGLPVQELKGRWTQGPAFLQSNEDEWPQEAKYKEPDNESDQSERRKEKVCAVTGRAE
EAIDVSKFSEWRRLVRVTARIQRLAEKIRLRKYEQEGRQGPLAPEELKKAEEHWIKKMQDTLHGRHEKGEFAPLSPFVDD
KRIIRVGGRVDAALVSYDTRHPILLPSDHRGALLIKRHVHKHGHLGVAATTAKIRGKYWIVKGNKLSKIVKKECVFCKRL
AHQTETQIMSALPQLRLAPYTPPFFHTSCDYFGPINVRIGRNKSDKYYGVIFTCLNTRAVHLEMAVDLSTMDFLQVLRRF
FSIRGYPATVLSDNGSQMVGAERELRELIKGLNDDQLRQFNAEKGKVDLHHPSAPHQNGCAEALVKTCKTALKKAVGEQT
LTPMELYTCLLEAGNxxTEAEGRIPNDPDDGKYLCPNDILLGRAPSDVPQGPFRETPNPRQRVEFVQRIVESFWKRWHRD
VFPVLVPTKKWRSEIRNVQVGDIVVVSDSNALRGKWSTGRVTEVYPGPDGKVRNVKVQTATGKYSRPVTKIAVIQAADEK
LL
>BEL-10_DEl#LTR/Pao 1589-6978 via tfasty with BEL-1_DPer, 1 frameshift. [Drosophila elegans]
MPIGDKKNLKTTPRVSLERPRSASPRVSQGKQEPKALISNAKSDSSLNAPVVPQIKVTRSSVKMAQRDAVLDKFISISDR
LSTFEARINVSGASDPSVHTCQVRRDQIKALWDRVENEYEVCSDAILAGGGEAHAMLELLQAKYEHCYEVYESCTAKLSE
QIERVKTQTANANSNTLPIPFSSGCRLPPCDTEVFEGDYLKWPTFRDLFTAVYVNNPRLTSVEKLFHLNAKTSGEAKAIV
AKSPLTNEGFDSAWEALRDRFENKRLLVNSQLKLLFNLGSVNPESGQALKDLQSTIQGCLIALAHSNISTENWDCLLVFL
CASRLPKLTLSLWEQSLSSKSDIPTWDEMNTFLSERYRTLEAIEDMKPSHSNHSNAKSQPVPRKLNSFEAKVVTKPKNCD
LCSKESHPVRLCQRFLQMSVDARTIYIKKKQLCLNCFARGHQLRDCTSTHSCFTCRGRHHTLLHKGNPISRGSTSAISSS
ASPQNPAVQGAANGLENPPSVQNYFATGARAVLLGTAIIDICHLGTNYRARALIDSGSEATFISERLFNLIKLPFRLIQA
QVSGLNQTVSAQATRLCHFSIRAPNKPGLQLETTAYVLPELAGMLPSYPIPRDALVDLPAIPLADPTFLESSQIDVLIGA
DILPSVLLSGTRTNICGSLLGQETIFGWVLTGPVSNASVQKRVAAFTTQITETSDRVLEKLLTKFWEVENIPTKRVKESD
SYCESNFLQTTTRDASGKYVVTLPFREPENFGSKLGHSRSIALAQLLRNENRLKRDFPLKEQYDSVIQEYLDLGHMREVP
PSYDTPNYYLPHHAVIKPESTTTKLRVVFNASSPSANGTSLNDILHAGPVLQSDLTIQILKWRYFQYVFSADITKMYRQI
WVDPKHTPFQRILFRNKEGQVSDFELKTVTFGVNCAPFLALRVLQQLADDVETEFPKASDIIRHFMYVDDVLAGANCIQE
ARLAISELRHAFNLAGFPLRKWTANQNSILEDIPNEHLLHDDFRDINSESTTKTLGVRWNATSDEFYFVPPLVSIESTYT
KREVLSQIAKLFDPAGWLVRSKIFMQEIWLQELGWDENIPTEMNQRWQEFLRSYSELKQIRIPRWVGFQPEVKVEHHGFC
DASQKAYGAAIYLRVEVGHNIMTHLLTAKTRVAPVKTVSLPRLELCGALLLSEMIAAILPNMPISNSDIFCWTDSTIVLA
WLNKPACHWATFVANRVTKITQVTSAEHWAHVRSEHNSADLASRGVSLRDLVHSQLWWEGPDWLQQPKGKWPTQGLATPV
TDLEQRAVKVNFAKALSDDFLERFSKLDKALRVLAYVLRFIQRCRKMPRGPADRPTKAEVREAERALILYAQREEYTQEL
KFLNDKRPIPVSSPIANLFPFLDQHGLLRACGRITASTALQYDERHPIILPYNCRLSRLLVLFSHQISLHGGNQLVVRLI
RSKYWIPKLKNLVKAVLNSCKVCTIYKKRLQTQLMGDLPTDRVSFSRPFTYTGIDYAGPFEIKNYTGRACLITKGYVCVF
VCFSTKAIHLEPTSDLTTEKFLAAFARFVARRGCPQRVHSDNGKTFVGAATLLSRDFMQAIKESVTDAYSHQGLLWRFIP
PGAPHMGGLWEAGVKSFKTLFYKSTSSRKYTFEELSTLLAKVEACLNSRPLSPMSENPSDLLALTPGHFLIGGPLLSTAE
PEIKGDAKSIINRWQHLKALHQQFSARWKEEYLKELHKRNKWQNPSKDIQVDDMVVVKEDNMPSNDWRLGRVVSVFPGAD
SRVRVVEIRTARGIIKRPVHKLVLLPMEANATSVLPK
>BEL-16_CQ#LTR/Pao 47-1788 Fragment. Covers entire internal sequence. Peptide has distant similarities to BEL-644_AA, BEL-631_AA, BEL3_Dpse and BEL13_DR [Culex quinquefasciatus]
FNKFVCTRANAANPVMPDPIRPCHHVHVVNCFGRGPEARETTHVDAYLLRRHQSCVGVPNETEHLAWNLPKCSIAIGHSK
PSSHSCTPQTAGQQKRPSATSISKESTSFSVFQHPHSPQPTVQNHARPLLQHKLPGIGPGPRANKCTPSTSTKTSLKFRL
KLADLKLKKIQQEQDLLKKKLDLERDVFNRKYALLGVSSDAQPSDHQVTTVDYSSPAQSGAIVSQTSLAKLNPADVPNPA
SSQRKWHWTPSTTCSTASKPPHTEVAKSKQRANFARATNDGQLEEENASFQLQQHYRSAGQQYLWTATNHTDVYRAANAW
PIVRSRIVRYQYQALTISCFPILTQRRPTTQILSRIPTTYHEKENKKDRQMFTFGSYYDTQVSLTNRPTQSLVSMECDNT
EFNDLRNSVVQMTKLLRTNLRFFQTSYFNTLRVPINSAASCIYKQKAAVLRGAEQVRLHFQSSWNTLVPSSLTGNSSARG
ISLHFDPPKGPDLMFVSKVNVERGTYQDRISCLQSVRAHTITTRTSTPQHTADLHIIVSTSYMKIAFRKGYSPAEWTPSP
ASSLLDVVDHFHLEPSGYSVRWKVNRTDWFGVPGG
>BEL-10_DWil#LTR/Pao 2348-7516 via tfasty with MAX, 5 frameshifts. [Drosophila willistoni]
MALKKFVSICDKLIQFEVDAHFTSLSDVSVFTLQVRRNRVQALWEKVEQEYEKCEALTDGKDDNSEDLAIQAKYDKCYQV
YERCTARLNELIHEGSAPTPPNRHAPTSAPAERGCRLPPIDTEVFTGDYLKWPTFRDLFTAIYISDSRISPVEKLYHLLA
KTRGEANLIVAKFPLTNDGFETAWNALKQRFENKRLIALVNSQFRALLDLPQISHESGKALQDHQNALQASIRAFEHCGL
PVTTWGGMFVFFCSIKLPKNTLSSWEQSLGDKTAIPEWRMMDDFLTERFRTLEAVENTTALAISVPTPKPPRNPLPATRK
ANTFEAKVTTKPKSCDLCMKENHPVRRCPRFLQMTVPERVAYIRKKSLCLNCFARGHQVKDCPSQHNCFTCKGRHNKLLH
KDARPENNPTPVPAQPSSHNIVRTYFTSEARSSRDKLLGTAIVDFWHKGTTYASRALLDPASEANFISERMFRLMKLPFQ
TVRAEVTGINGKVNRTLKVCHISIRSSHGPPVQIEIEAFVLSQVADDLPSCTIAQATLEGMPNIPLVDPSFRLKAKIDLL
LGIDVIPAVTLSGIQTEVCGSLMAQETRFGWVISGPLQGVPVSSCAAFTTRVAVSREEGLETLLTRFWEVEDLPGKPVED
SDSVCEVNFQKTTRRDVSGIYTVSLPFRDPTNINLGHSRPGALAQFLKNESRLLKNIPAKTEYDAVIQEYLDLGHMRQVP
FDGTNNNFYLPHHAVFKPDSTTTKVRVVFNASSKSTNGVSLNDILYPGPVLQSDLTTQILKWRFLRVVFKADITKMYRQI
MVDPIHTPFQRILFRNKEGQLGDYELNTVTFGINCAPFLAIRVLQQLASDVQSKFPLASDIIKSYMYVDDVLTGAHNEHA
HRMVNELQDALGSAGFPLRKWRSNVKSVLSCIPKSHLLNADFLDIEEASTAKTLGIRWKATTDEFYFVISPQDVKSAYTK
REVLGQIAKLFDPAGWLAPFVIQAKVFMQELWLQELGWDDQLPSEVHHSWQDFTKSYSFLDQIRIQRWVLHDPNSDIQFH
CFCDASQRAYGAAIYVRVSNDQGISCCLLAAKSRVAPVKTVSLPRLELCGATLLAELAAAVLPQLPVDNAEAFYWSDSTV
VLSWLNKPPCTWTTFVANRVAKIVTGQPNDTPWNHVRSEDNPADLPSRGLSAQELVHKDLWWHGPPWLREPQESWQRATP
LPLDTTLEKRVVKVHVAIAKPANEILSRFSNLARALRVIAYVIRFGRRCRKLPNDYSGRVTSSEINQVLQALIRVTQRDY
FPAEHRCLQQKKSLPTSSTILNLNPFIDASGVIRACGRVQQAAALSYDERNPILLPVVSPLSRLLVLFTHQISLHGGSQL
VVRLIRQRYWIPRLRNLVKSVVNSCKVCVIYKRRLQSQLMGTLPAQRTTFARPFTTTGIDFAGPFDIKSFTGRACRISKG
RVCVFVCFSTKAVHLEATSDLSTEAFLAAFARFVSRRGCPQQVQSDNGKTFVGASRVLEKDFLSSTQQKILSPYSHQNLS
WHFIPPGAPHMGGLWEAGVKSFKTLFYKATSNQRYTFEEFSTLLAKVEACLNSRPISPMSEDPSDFLALTPGHFLVGGPL
LSVTEPKIKDQVPSIINRWQRLKAVSQHFCTRWKDEYLKELHKRNKWRFPSKNLEVGDLVVLKDDNLPFNEWRLGRIHQT
HPGSDGNVRVVELLTARGIVKRPVAKLIFLPPEERIQTHYVKLQ
>BEL-7_CQ#LTR/Pao 377-5727 via tfasty with BEL6_AG, 2 frameshifts. [Culex quinquefasciatus]
MNLEVQEEEHESGDDTKKEVTPVKKQLEEQRRKQKIREMEERLKVLVQQRGAVKGKLTRLKTALTQRTGTINPNLRKVNF
LKMHLETVKACYSEYNGFQNEIYALGLSEDQKKVHESQYEEFEMLHNMLVVELNDLLDEVSKPVANAALVPVAAANAALQ
NYLPPLSVPLPKFDGTYETWYSFKSMFQNIMARYTNEAPAIKLYHLRDALIGKAAGVIDQEMINNNDYDAAWAVLEELYE
DKRAIIDRHIDNIFALPKITRDNAAELRKVIDICVKNTEALKKVNLPVDGLGEQMVVNLLASRMDKDTRRAWEATQKAGV
LPTYEATITFLKEKRRIADKLEQNSESDKVKPQRSVTKTKTLVVASEAKCSVCNQDHEVIKCEQFKLKSVNERYSHLRKH
GLCFNCLRRCTSTNSCQKCSKRHHTLLHTDGPKKQEPGCQHGVNSCPESQRRRPHSIRSTSHAGSSQSGEGLTLCTTSEA
PRKQILLSTAVVLVYGAGSVPYLCRALIDSCSQNHFVTERFANLLASKKERADYQVSGLNGGTTRISHLVRAKVKSRVGN
FAADLELLVAPKITGDVPVKTIDIAGWNLPPDVELADPNFNQRGRVDMLLGAGIFWDLMKAKRITLAANLPSLRDTELGW
VVGGVMSECTPVIARTFCTVNEDEELNKLLNRFWEIEGVEDLRRPVTSTAEESLEHFRSTYSRKPDGRIVVRLPFNERKS
DLGASRDMAIRRFLNLERRLDQQPDLKREYAKFIHEYEQLGHMKEVDVGPSEPPGSAYYLPHHCVLRPSSTTTKLRVVFD
GSAKTSTGVSINDALKVGPTVQNDLLSILLNFRCYRYVFTTDIPKMFRQIELHPEDTPYQRILWRDDRSQLLKVFELKTV
TYGLASSPFHATMALNQIAEDGVKEFPLASAALKKSFYVDDGLCGAQSVEDARLLSRELRKLLNTGGFDAHKWCANDPAI
LEDIPEELWGTTFDLKDAAAKSVVKTLGVAWNASQDWFTFSVLPPEEETKPLTRQKVLSEIAKFFDPLGLAGPVVTTAKL
ILRKVGTLKNIGWLDPVPESVANEWRRFRKQLPALNDFRVSRCVYDEAAERVELHGYSDASDDAYGASVYARNIYPDGEI
TMRLICSKSKLLPKKVKNVPKELSTPKGELEGALLLAELVDKLVNVVDVCFDSVNLWCDSQVVLSWIAKKPDDLELFMAN
RVRKIQQLTSKYRWGYIPTDDNPADLISREVMPQNLIQRVIWKDGPVSMNNRTIEVVQPPLLDGADLPGLRSTKCLALAA
PIQRLRIFDKLGDFRRLLRSMSLVVRFANYIISGRKVVVKGLPTSEERAAALKLILRLVQRETFQTELLALKENHSHRLR
GLNPFIDPDDGLLRVGGRIKQAFVPYDSRHQILMPAKHPVTESFIRYEHVKNLHVGQKGLLALIRQRFWPMNVKTTIRKV
IRGCVTCFRVDPTKTVQLMGDLPSYRVQPAPAFFNTGVDFAGPFLIKSLTAARRPMMTKGYVFLFVCMSTRAIHLELVSS
LTTEGFLAALRRFTGRRGLVNKMYSDNATNFAGSETELERLAKLFAEEQHIEQVEEFCSSRGITWSFIPPRSPHFGGIWE
AGVKSVKHHLKRVVGNQKLTFEELTTVLVQIEAVLNSRPLTPCSNDPNDLTAVTPAHFLIGREMQAVPEPSYLQLKQSTL
SRWQHVQAMQQQFWKRWIAEYLPELQNRQKWFKTTKIQPGALVLISDPNAPPMQWQLGRIIALHPGKDDVTRVVTLRTAK
GECKRGVSEICLLPLDQETTEED
>BEL-5_DMoj#LTR/Pao 1209-6371 [Drosophila mojavensis]
MTNKRGKNRSMDESSSERVEALLAVYKNVTNDITRINKSLKDYTKPVEPFEIECRLEILNRYIEKAFKTQQELDDINADL
VPRSTLEDLCVSTKALLMKRGSDSQPKSESPANSTMISSVSHSRNLPNIKLPKFSGEYSEYKNFIGLFESLVDNEPGLSN
IEKFNHLLSCLDKEALGTVKAYQVTDANYPKALAALKNVYDNQCLIFFNSISKLFDLPHMSEPSASSLRMLIDSVRAIYE
SLLSLGSDKQISNAMLIHLVMMKVDAGTRSRWEENLDYNKLPLWQDCEAALNRRYQHLSAEDSSGPRRKVAQDNKKRIGK
TSLAVALPSEPQSPKCVFCKKNDHFIHSCSSFAAIPCQKRFTFAKSYPLCINCLRTGHSVAACKSAHCRVCSKPHHTILH
RYSSEAAQSSSAVVSAVPRVTSSQISSVNHARIASDQVLLATAVVKIKDQSGSYHLARALLDSGSQVNFITEELAKQLKL
KRQRSGIQLLGIANCQSSVRHSVQTSIASRTDDIEIRTDFGVLRSISSYQPEKHTEEIKVPDNVQLADPQFHKPQRIDLL
LGADIFFDILREGKIKGSDNNPTLQLTAFGWIVSGRCRTLNAATSSSTFISVVNDDIAIDSIVRKFWELEEKPNTINSNL
YTPEQQLCEKSFVETICQTTSGRFRVSLPFKSSPHCLGTSYDTAKRRFLALERRMSKQEDIRPMYIDFMKEYLALGHMSP
TNNQIPREPHYFIPYQCVLRPHSASTKLRVVFDASSKSSSQLSLNDLLMVGPTIQPQLWETLLRFRLRPWAATADIAKMY
RQIELDESHRNFQLIVWRETPTDPLQIFRLNAVTYGTATAPFLAIRCLKHLSDLHASTHPAAARSLARDFYVDDLLTGAD
SVEELCLLHRDLIAILQKFGFPLTKWSSNCKQLAAQPARNDIVIGHQEDTKTLGLIWNPMNDSFRYSMNCPVEVQQTKRS
VLSFVARLYDPLGLLSPIVTRAKVLLQEMWLHKLGWDDQLPVQMRQEFEAVTSCFSNLNSLHIPRYVGTLKSKGCQIHGF
ADASTRAYGCCLYVRMQTDKGITTRLLVAKSKVAPLKTKSVPRLELCAAELLATLWDAVRKVLDCPINQVTFWSDSEVVL
HWLRMHSSSLNTFVANRVATIQELTTNVSWRHVPTKDNPADIVSRGCSVEELKTSLWFCGPGFLKLSDTLWPANPQITLS
KELELLEKRRTAITMIAVDEVANPIVHLIESTSSFSKLIRIVAYMFRFIDGKQESHSSLVPTASELSFAFLAVISVIQHI
EFSEEIKKIKKSVVLQPSLQKLTPFLHPHQHGRRMLWLLRVGGRLLKAPLAHNAKFPLLLPKKCRFVTLYLEHLHRSHCH
ANPLVLMGLLRQQVWLVNARQACSAVVRKCVHCFRYKPKLLSQIMGNLPADRLHGNRPFEISGVDFCGPILVSLGIRGKS
PVKMYIAIFVCFTSKAVHLELVTDLTTNSFLMCLSRFVGRRGLVRKLYCDNATNFVGAARTLDLKATFHGNTADMEMFAA
ERGMEFVFIPPRAPHFGGLWEAAVKSAKGLLLKAMGSARLRQDEVATVLVEVEAVLNSRPMVAPSSNPNDGEVLTPGHFL
IGATLVPLPIASTEPVDDVKLTLLKRWQLTSNIKRRFWNDWSRDYLLSLQQKSKWTKERQNIQVGAVVLVGEDNAPPQQW
MLGVVTEAIVGGDGRVRVIVVKTKNGTYKRAIHRVAPLPLH
>BEL-4_HM#LTR/Pao 339-5735   [Hydra magnipapillata]
MAAILGRKIAKRKALRSIFQKNVVEISQALEDPDTSQSRFIALKNSLSDSYTNLNNIDEEIINILDPNEVEEDVLASVEI
TDPFHNILSKINLRLESLKLGFDNNSEQSSKNKINCRLPKIELPIFKGNFLEWQTFWDQFNVAIHNNDDLNDIDRFNYLK
KYLGGQALTTICGLTLSSENYREAVSLLTERYGNPQILISAHMDLLLKLVKVKNSDNVDGLRKLYNDIEASVRNLKSLKV
ETNTYGSLLIPILKEKIPDDLVLLISRKFGGEVWTIDLLLKYFREELNAIECCSTNSRNVENRKNNSQLFTTAGLYSQNI
NQNSKNNYKKVFPKSFDSDYQNKRNYNYPCIYCSENHNPWECKNVTNFSTRKEILKKQGRCFNCLRTNHILKNCQANYIC
SKCKKKHHISLCEKENTFVGHATHNISQQTILLQTARANISAVSENKSLKARILFDSGSQRSYISENIQKRLNLKTIRKE
KIIIKTFGKDNEQTLQLLNVVQFKVKHKYTDHSVYMEALCVPVICSPLQGQNVSLACNQFKQLSKYSLADYDDGSLDFHV
DILVGIDFYHSFITGRIVRSPIGGLVASKSILGWVLSGPISLEKSTKNTTKTVFTSHSMHCEVESEIDELRKDLNKFWSV
ETIESPESCVMYQFERDLTHNGERYITKLPFKTDHDFLPDNYNICKKRLANLKVRLNDKQLVTEYNQIFIDYEKNNIIER
VSESDIFKEPGCVHYLPHRPVIRRDKDTTKIRAVFDASCSTTGPSLNDCLYSGPNLLSKIFDILLKFRFNAIGIIADIKQ
AFLNIEISPEHRDYLRFLWYERISDKEAKLIVYRFLRVVFGLTSSPFLLNATLKHHLNKYIKHDEKFIERLIDDLYVDDI
TASGCETISEGKMLYKKSKCIFLDAGFELRKWITNDHELQNYFNKKETNQSENSKCNLKVDELKYFESEIIKNENNNNFI
KILGIEWDILKDEFVFEFKEFVKNARMLKITKRNILKXAASFFDPLGFLTPITSRVKTIFQLICRDKSGWDEIVTEAIEL
ALTEFLKDLELLSFVRIPRFVFERVNESSKRVQLHGFCDSSKLIYCAVIYLVVETSLGVNRKFLVSKSRVSPLKELSIPR
LELLGCVLLSRLLEEVLRVLKGRVHFEDVSCWCDSEVALYWIKGKERTWKPWVENRVNAIRKVVDREKWNHISGELNPAD
FPTRISNFVDFGHWLKGPEFLLNMNKEINEFKVDKKFQVDIMSECKRGENVVICNVVLDSSPSLSSIIDACRFSSFEKLI
ISTGYVFRFINNLLKTIKKLPLNKQVTLTTDEYKFALNEWIRDEQRXLQNDKSFDKLKNSLKLFDGEDKLIRLRGRFENA
NLNFAEKHPLILRGKESWFTILLIRNCHEQVLHHGIESTLNKVRSQFWIIKGRSTIKSIIRQCVTCKKFQGRTLLPPSSP
DLPDFRVNNLYSFQATGLDYAGPLFVKTVNKDAACKVYVLLLTCASSRAIHLELTPDMKIPAFIRAFKRFAARRGFPDLI
ISDNFKTFISKEVKNFMMKNDVQQKFILPASPWWGGFYERLVRSVKITMKKTIGKSLLSYEELETILCEIESVINSRPLF
YMSEDDTEEALTPYHLMYGRNIVNKMNGISLLPNDISKRAIFIKTTIFNFWRRFATSYLNELKQHHLYVKSKTSYNEQLV
LNDVVLIRDDIKIPRSQWRMGKVLELIRGADGKVRGARLQVLSKEGIRTTCFRPIQKLIPFEITNKSNEMNKDKNSRSSE
NELGVIATDETCRSICKRPIRQAASAGENLRRLKELYY
>BEL-5_DWil#LTR/Pao 377-5820 via tfasty with BEL-67_CQ, 1 frameshift. [Drosophila willistoni]
MATKDLSSGIYHCKKCMQEDNDRMVQCNRCCSWYHFDCVGVIDEKSENSWNCDCVNVSSEVITTILSNALQNLGNTTRAG
EPQATSSPAKPTGPLPEPDRDFRLCSPKIFPDTARTAVPIFTSAKQKAMITHSAVRDTWHYDHEAPQLPFLTSNNTRATT
REQPHLSATPMAPWNFTNTQNRAASYYPESKVRMDIDLNTAIPSAAQLAARQAIPKELPTFDGNPQNWPLFYSSFQTSTE
IAGYTNAENLMRLQASLKGKARELVQSKLLLPAMVPEIIETLRMCFGRPEHILHNLLEKTRQLPAIKDKLEPLIEYALCV
RNIYSTMEACGLTGYMQNPMPPKTLVQELLEKLPTQLKLQWAMFPKDTKVPSMESFSKWIYDIAEAASQVTSPLYHKKSG
SLNHHTEAPKEQVKEITCVVCNEPGHKIHSCPSFKATPHQRKMSFLKNHKLCQQCLNRHHQKCQREKVCGIRSCRSKHHP
LIHEMQPMPEAAKSSSPNRPAMVTNVHTPEGKHTQRSRESGSTYFRVIPIQIINKTKVTNTFAFLDEGSALTLIDNKVFK
QLGLKGVPDPLCLKWTNDTTREENASERVTLTVANPHNGNQFYLEEVHSVDTLDLPVQSIDIRALAKEFPHLAGLPIASY
TNARPSILIGTNNWNLAVPLKIKEGAWHQPIASKTRLGWALQSSTPSRATRANVSVHMCGCRDADAKLHEIIKQAFSLDA
TTAKPLSSPEETQALTRLESTTVLKNGRYEVGLMWKDPEVLLPDSYANALKRLKCLQKQFSRQPQLKEQITKQIENLVEK
GYARMQTPEEIAAPNRRTWYLPTFITKNPNKPEKVRLVWDAAAQSGGKALNDYIWSGPDLLNSLFDLLLSFRVGRVAICG
DIAEMFHQIRVRPADTHAQRFLWFDSKSERQEPNVYVMEALTFGINCAPCIAHFIRDKNADRFCQQYPQAAQAMKDYHYV
DDFIYSGDNYVEVGNIATQVRDIHAAGGFHIRNWSSNSKEVLRILKSDSLLPEAVEITATEKVLGLYWMPNSDVFTFICK
FARLKRNVLDSDKTPTKRELLQVLMSMYDPLGFISCFTIELKILLQEVWRSGIGWDTGLPDALLPKWIRWKRILTTIAGL
TIPRCYFNSSDQIHDVQLHTFVDASELAYAAVCYLRIRQGERTYLSFVASKAKVAPLSPLSIPRMELQAAVIGAKLSNRI
QRNPRLSINSSCYWSDSKTVLKWLRMDPRKFQQFVMHRVGEILEFTNVSQWNWVPTNLNPADLATKTNNANKYKTWLHGP
DYLLQDQHEWPKCDDLGPPNNAEVRHNILFIDNSPMELKLNAEYFSDWRRLYRALARFILYIEKLKAKQKKASPPTEVSY
EMIQQARTLLLRHAQSSEFNPEIRNLTRGKPLKTNSKLICLNIFLDENQLLRTRGRAENLNGQNQILLPYGHHITRLIVN
WYHQKMHHTSHETCINRIRGMFYIPRLRVLYKGMRKSCQRCKNESAMPVPPQMAPLPIARLAAYQRPFTYVGIDYFGPFL
VAVGRRSEKRWGVIFTCLTIRAVHIELACSLDTASCIMCIRNFINRRGTPREIYSDNGTNFKAAEKIICDKAQTINFNAV
QPAFDDIKWKFNPPAAPHMGGAWERLVRSVKTVLYAICPARKFTSEGLQSALWEVEFILNSRPLTFVSLDSKDDEAITPN
HLLLGSASGYKPVFETTHTVQHMWQAVQEFADQFWRRWVREYVPDLARRGKWFTKRPPIAAGDVVVILDETLPRNRWPKG
IVEQTILAKDNQVRRVIIRIANGTLQRPVAKVAVLDVGCFGAKQPPEESSFTGGG
>BEL-6_XT#LTR/Pao 28-5291 via tfasty with BEL13_DR, 1 frameshift and 2 stopcodons. [Xenopus (silurana) tropicalis]
MAERFDLLKCKRGAVRSSTTKMLQKIEGELGKSAPQTDILQEILEQLSLREATLYELDRDIEALITSAEEIEAEYETVQS
YQDRIVMWKSRITRVIQRDREEVNSAASYAVPQSRSASQNNTVKLPKLIIGKFSGEISHWQEFWSQFETAIHKNSSLSEI
DKFNYLKSYMCGAAATAIAGLPVSKENYTEAIEILQTRFGRKDLIINAHMNKLLNLTAVKRSSDVPALRHLYDECEIQVR
SLQSMGVVSDSYGGLLCPILLKLIPEDIAIEFSRQQEHQQCNVPMFLKFLKREVESREHALYLTRSEKPSLLYNQEQHHQ
KSRAHLEYKPKRLTMPTAAALYSASNPATCVFCDQSAHKTENCDKFTPEECKERLKxKGLCFVCLGPKHIAKYCRVKGVI
CATCGKRHHNSVCDQRTNKSSMNPTEDTVISSVSPDNKDMANSKTVLLQTAQAWAEGPTTRKIVRCLLDGGSQRTFIRED
ISRSLKLPVVGKETLKLHTFRSKRPVSTSQRRVKFILKILHSCDNWIEMEALEIPTISSAVVKIPKEHLQYEMKSKGLRL
ADSTELTCQDSEIAVLIGGDYYWKVVSGRIERLGEALVALETTLGWTLQGPVQISSATGIGSVGVMNISVADETLVSSQL
RAFWDLESLGVTGEKMVNSESDEEILQWFSSTVKYTAGRYVTELPWRPDRPHLANNFTVAKGRFDRLMKRLSKDFPLYHR
YNSVIQEYLADGIVEDVETGEPSAAPQGKIEYYLPHLKEEKTTTKLRIMFDASSHDKEQVSLNDCLLTGPNLNPDLLKIL
VNFRLHKVALMADITKAFLQISIAEKDKDSVKFLWTNDIPRPNQEPSLRVLRMARVLFGASPSPFLLTATIKHHLKQYEG
SHPRTVQVLNQFLYVDDLISGADTVDDAYEISAEAKEIMLAAGMVLCKWVTNSSELRLKWQENNTENGSVMFDQANYCKV
LGLKWRTETDDFVFDLQALLVFLKTRRNTKRCVLMTAARIFDPIGFLSPFTVRVKILFQDLWERGIRWDEELPPDLTSKW
TQWCLELSQLQTLSIPRQYSQCPPDAAVKMHVFCDASESAYGAVAYLQYIKEGIASTCLVASKSRVAPLKKVTLPRLELL
GALVGARLMKYLLDCLSIQSILPNLWTDSMIALHWIQSSTRLWKPFVANRVAEIKSLTEPTVWSHCVGKDNPADFLTRGQ
GSTDLIKNHLWWHGPDWLQGPQSGWPQGSQMVTNISECADVESDNEVTLYNNCNTELKCDPVFPLERFSKLRTLYRITAW
VYRFIQNTSQPRKRITGELSVEEISRAERYWVKYSQGCEFSAEILCLNTGKSLPNNSKIRDLNPFLDKDGLLCVGGRLHK
ANLTERQRHPWILPTKGHFSELQVQYQHEKVMHLGLQGTLAQLREQFWVIRARQLVNFVLQKCCICKKFNVKAGSEVPAP
LPEDRVLEAPAFEVSGVDFAGPLFVKDKTSSKKAYIALFTCAVTRAVHLELVSDQTTENFLLAFRRFIARRGLCKVVYSD
NAKTFKRSDLSLQELWKTLNTTSLREFFTEKGITWKYIVExGAWWGGLWERLVRSVKSCLKKTLGKAMLSFEELTTILTE
VEAVLNSRPLTFTHSDAQDLQPLTPGHFLIGQRLTTLPQSKVPTVSHNCSTQEVLSKRWKYRQVLVTKFWNRWRKEYLLD
LRSAHYTKRGGCASTFKVGDLVLVKEDKMPRQMWRTGIIDTVFPGRDNRVRSCSLRLPSGTVLRRPIQLLYPLEI
>BEL-5_NV#LTR/Pao 18-5302 via tfasty with CATCH3_DR_167-6232, 1 frameshift and 5 stopcodons. [Nematostella vectensis]
MSIPAISPLHDSFSKAGSEVSITPKTNARKKTAIARLKARQIAERIERERAQSEEQLTRELELDKQRKQLELLKLRKQND
DELIQAKNEIALAELEAFDLEPMTPILAYVDSLPTQGTVGAxANVQTMLLDPVLPLFEEMKTNNNIPSSKALPTSHGRLI
SPLTTVQDQSPSAGTYxNNPHRFRxNSLFIPEFGWGGQEGCxEFGSNYASELKMLKQQFGNNHRVEAAHLKSMVDGPDVV
QGDRQSLRSFHYKVKACVQWCTKQGLAAILQNPEYLGRAAMKLPDGMRMRWYEHLQGDYDGLSLLDFERWLQRRVDAMFN
PFEDYVHERESRPRLPRPRHFSQGPPPRALHPNSVGIRVTRSTQESSSGEVTAPPQVDSPGQDRCLVCEDRHRLVYCDSF
KSKPFKERRKIVYNKRLCRNCLKEGHFADSCPSSGRCLKEGCGLKHHTLLHSERVDESKSEEKDGADHKVNALQLVPVLA
WGPKGQVKTVAVLDAGSDSTLIRKDLAEQLELKGETHQLQLNTVESDTRSCNMQRVGFRLSSDDHPEKIDVEGAWVVHKL
NIPKHKVSGKEAAKRWNHLEGVNLQTLEAGDVTLLIGSDMAHLLVHLDVRQGRPGEPIAVQTPLGWTLFGRLGRAVLPNL
MHVHSNLTLLKxGELLNEQVQRFWETDSYGVSRTERPIGPSAEDRRALETLDSTVRKMGGHYETGLLWKEEAVVLPSNRR
MAMYRLNSTEQKLKKDPELASMYRSVLNEYQSKGHCRKLSEVEAAIEGPRTWYLPHHGVQNPSKPGKLRVVFDAAAKYNN
VSLNDCLLTGPDLLNDLVGVLIRFRCNKVGIMGDIEKMFHQVKVREADQDSLRFLWRNLEERIPDVYRMAAHVFGAIDSP
CSACYALRKTAEDQAGLFPDDVLDTIKRNFYMDDVLTSRPSEDEAAAVANQLIEAVAAGGFRLTKWVSNSRNVLRSLPSD
EVSCDVVNLDLQTLPQERALGVKWCLEQDTLYLKPLKDRFPDTKRGVLSATSSVFDPLGLAATAKLIIQELWRCKIDWDE
PIPEELRSIWKSWKDGLKTPLMIQVPRWYGFHLRDAQDIQLHVFSFASEVAYGAVTYLRAAVGDQVVVSFVLGKTRLAPV
RTLTIPRLELQAAVVGARLRKKVINEIDLPINAVHLWSDSKTTLQYIVNTTRRFSTYVSNRVSEILGSCKPDEWHHIPGK
LNPADDCTRGVALQDLTPDSRWLAGPDFLAKPPCQWPSADPEPVEESDLEVKATVLATGVSAPPFDVKWKRYSTLGRLVR
VYGWCLRFKSILLSKARKTAAPLKADLQTLVAEEMKDSRLELCRIAQLEMFPDEYAALQSGKPIASHSRILPLQPVLIDR
VIRVGGRLKDAPVSFEEKHQIVLLSGHPLSSLIVQDFHQRNRHVGREHTLALVRQEYWILRGKGLTRKLIKDCLLCKRRR
AKPKVPLMASLPGSRLVMCEPAFSSTGVDYFGPMTVKRGRVTEKRWGCLFTCMTTRAVHVELAGDLSTDAFILALRRFRA
RRGNPRLMQSDNGSNFVGAQRELAEALARIDQERVTDELSKESVTWSFNPPAAPHMGGVFESMVKQVKRALKVVIGDRVL
YEDVLHTALVETEAVLNSRPLTPVSDDPDDFEALTPNHFLIGRASPNPPPGEFQEREVNSRKRWRQSQTIADMVWHRWRK
DYLPTLTVRKKWNKEETNLRVGDLVIVKDEDSPRSHWSMARVTAVFPGKDGRVRTVQLKTPSGTLIRPVAKVCLLEESAE
SS
>BEL-17_DAn#LTR/Pao 272-5472 via tfasty with BEL-5_DWil, 3 frameshifts and 2 stopcodons. [Drosophila ananassae]
MPTEQDTTVCNICKKSRLNSGVQNWVQCDICKLWFHFACAGVDANIRERPWKCTFCKEEEDDVISTCSDYPVPPHPQEVQ
SINSAKSAQEQLDAYQPQIQPNKQQAFKLTEPTSAPSNSNLMLAMLEETREAERKYIHQKYTFLSQQQGVNTIPFAEIGP
TTAQLAARQVLPADLPPFSGNPEEWPMFISMYENNCAVAGFSNAENMLRLQKCLKGKAYELVRDKLLIPTLVPEVISTLK
TFFGRPEQILDRLIDRIREINVYKDKLETLIDFAMAVRNACATMEACRLHRHMDNPMLLRELVGKLPTHHKLSWAMHQRC
DSIPIIQSFSDWLYKLAEAASTVLPGSSAKTNSVNTHSQTRRGSSNEATFDTEVDLQEETRASQTCIMCNSTEHTAAQCE
KFKLLTVPERQRIINDSRACYRCLKAHRRKCFSRRDCGVDNCQSKHHPLLHRDPPQSELVSAHHEEGIMEEQYFRILPVT
LCGKGTSINTFAFLDEGSSVTESVLLKDLKIATTNEPLCLQWTGGTTRMEDTSERAQLQISETGNSKKMWLNKVHSVKKL
LLPKQTVDADKLCKRYKYLHGLPLKSYYNAEPMILIGTNNWALAVPRKIREGRRNEPIASKCALGWSIQGTGNSSKHVSL
HHCECNWGELDKAIKDSFNVDPIAPRKLQSEDDKKAIRILEDTCKKVNGRYQVGLLWRDDRATLPESLSTALRRLECLRS
KIKRDPEFERVQDQINNLVSKGYAIELEPTDINKEEHRVWYLPIFIALNPNKPNKVRLVWDAAAKSHGKSLNDFILNGPD
YLNPFAEVLMAFRVGRIAVCADIAEMFHQITIQESDMQVQRFLWFHNDKKTPRTFVMRSMTFGICCAPCIAHYVRDKNAE
AFKDTNPRAYESITKAHYMDDLIDTYNNDSEAVSVASAVKDIHANAEFTIRNWISNSAAVMHHFGERQLNTHNPRELGGP
EKVLGMYWDPKHDVFKYIFRFARLQRDVLNGDATPTKREILxVLMSVFDPLGLISCYTIGLKMLLQKVWRSGRDWDEELP
EELLQFWMQWKIVLLQATKLEFPRHYSRLLPEAEQIDLHTFVDASEYAYAAVSYLRIKKENNVDTVIVAAKCKVAPLKPV
SIPRMELLAAVMGVGLAKKIIKNTRGLRIDKCTYWSDSKTVLQWLKIDPRNFQPFVMHRVGEIIDNTTINQWRCVPTKEN
IADLATKIVKAPEASRWINGPHFLIQPEGEWPEPDVSFNEETIYYFSDWKRLYRAVANFLLYIEKLRAKCCGKPLPKRLN
PDIVRSAMTWLYKQAQFELYAAEITSLKSRSCINKASPLIALNVYLDASGVIRVQGRMNKLNPAGDAIVLPKKSRITFLI
AKDYHERSHHMLHETTINLIRTDFYIPRLRVLFKEVRMSCQKCKIITALPKHPQMAPLPAARLASFERPFTYTGMDYFGP
ILVNVRRHKEKRWGVLFTCLTLRAVHLEVAHKLDVSSCIMCLKNFMALRGVPKEIYSDNGTNFKATEKVVKEELKRINFD
NITILYDAIIWKFNPPAAPHMGGAWERLVRSVKSVLKSIYPINNFNDETLRTALMEAETILNSRPLTFVSLDSEDEEALT
TNHLLLGSPSGYKPMLEDNTDLRLRWHQTQLFADKFWKRWIREYTPTLTRRCKWFTKRPPLAIGDIVVVVDDQLPRNSWP
KGRITDVVIAKDGxVRRATVWTRNGIMIRPVAKIAVLDVGLKESEDPKDVHGGE
>BEL-88_CQ#LTR/Pao 11-5771 via tfasty with BEL-30_CQ, 1 frameshift. [Culex quinquefasciatus]
MNNLTGYCCGICKAAVEKDGDLPFCDHCQQFFHYECAQLEKGVKDDSWRCPNCAAEMEVTQVIVKFDDLEKTLQELEAEA
KRQEERIFAEQKLHKRRLELQQQTQQRQQEAERQMLALEQQLMEQQLAAEKQFQEQQKKNKEDFEAKMAQLKAEAKSPKT
KKEKKIKKSKGDKKKLDASGTAGPSGISTPLRHPGVTIPEVPKPKPTPIPADSGEEGNGNERDESGSDTSGTETESSSSD
DEQEKAEVEPPKQLRGPTKAQLTARQFLARKLPVFTGRCEEWPMFISSYETSNLACGFSNVENLARLQDSIREPALTNVR
SLLLLPEKVPAAIETLRMLYGRPEQLLNTLLIKVRKADSPRSDRLESFIYFGVVVQQLVDHLEATHMNDHLVNPLLIREL
VEKLPAGSKLEWIRFKKLKKHVSLRTFADFLSDIVTDASEATLFTEPQLQHQPQSRRDAKPKAGSRTHESYLHTHAAAEN
SGDTNHAGVNNKRPCRICDRTDHRVRNCEKFKQLKLDDRLDAVKKWQLCKLCLNEHGSARCRMNFRCNVGNCKERHNALL
HSDVPATVVNCNAHDVRARQPVIFRMIPVTLYNGGRSVNIIAFLDEGASYTLVDESITKLLNVRGAVQPLRIMWTAGVSR
LEKQSENVCLSISARGVSTQFQIKNAHTVNELKLPEQTVCFADVVKEYNHLHDLPVADYRGAPKILIGLKDLHLYAPLES
RIGGAGEPIAVKSKLGWTIYGPHENNAPAAGFVGHHASHQVSNQDLHDLLKNQYLLEETGISMALLPESDEDKRARSILE
STTVRNGDRYETGLLWKADDTSFPDSYVMALKRLKSLERKLLKNDSLYDNVRRQIVEYQQKGYAHKASQQELAACDPRKV
WYLPLNVVTHPKKPEKVRLVWDAAATVAGVSLNSQLLKGPDMLTSLPSVIFRFRERPVGFGGDIREMYHQLRIRKEDTNA
QRFLFRNDPTAEPEVYIMDVATFGATCSPCAAQFVKNKNAEEFSKQYPAAAKAIVENHYVDDYYDSASTVDEAIQRAKEV
RLIHSKAGFEIRNWVASSSEVVRALGEKEADQKVHLSQNKTTGYERVLGIVWNTSTDEFLFSAEMREDLERYLKGELRPT
KRVVSSCVMSLFDPQGFLISFTIFGRILIQDLWRAGCDWDKAVDDEAWEKWKRWVSRLQEVEGVRIPRYYFQGRARSDYE
TLELHVFCDASQCAYGAVAFFWIMSSVGPICALVSGKSKVAPLKLLSIPRLELQSDVVGSRLMNFVQENHTLKIAERFIW
SDSEVALSWIHSDQRKYKQFVAFRVGEVLTLTKQSEWRKVPSKLNLADMLTKWDNKHSFRQDGPWSRAPEFIEEAKRLWA
ISKQQVQLNTPEEMRASVLYHSIIVTEQIIDPQNFSRWTVMVRSVACLARFRSNCRRKAKGLPIEALPLSKAMKGLVKRT
VPVVPVPLKREEYQMAETYLWRWAQAGYFPDEVTTLLKNLELPADKKLSLEKSSVLYKLTPFLDEQKVMRVDGRLERATM
VPFEVRFPVILPKGHPVTTKLLEHYHQKMGHAYFETAINELRQRFFIPNLRAELKRVMTACVKCKVEKSVPAIPRMAPLP
VQRVTPYQRAFSYTGVDYFGPVAVTVGRRSEKRWVSLFTCLTTRAIHLEVVHSLTTQSCVMAIRRFACRRGMPIEFFSDN
GTNFQGASKEIVRVDAECREEFTDARTSWNFNPPSAPHMGGAWERLVRSVKEALKAFDDGRKLTDEVLLTSLAEAEDLIN
TRPLTYLSTEAGSTEALTPNHFLRGVTTNDRGAQRAESTSPAEALRDYYKRSQLLADCFWKRWIVEYLPTLNQRTKWHAE
AEPIACGDVVYVVEGANRGNWVRGIVTEVFKGADGRIRQAMVRTSRGELKRPVSKLAVLEIQERKTGAKEAPPTRVTGRG
>BEL-37_CQ#LTR/Pao 530-5926  [Culex quinquefasciatus]
MSDQQTPTGVSSGITRRNILDALTGSKGSVVKTVAQQKADQEAQQQKRRMEKNLEALEDRRDMLVEKLERMKGSLEEVTV
SVHLLKLYEETLRRSADDYDKNYSDIIVLLPKEKRAEQRGKYAAFEKLHSTVYEKLQARIAESELTTKLLELPKAPAAAV
APPQPVYIQAPAPVPHLQAPFPTFNGKPEGWYSFKNLFQSIMSRYTNDPPAMKILYLRNALVDDAKDKIDQDVVNNNDYD
AAWRILEDEYEDKRLILDTHIDAILDCPKVAKESRGKSISKLVEVCAKHSEALAGHGYPVEGLAELVMVNVIYKKLDKET
QEQWELKIGSGALPEFEEFMEFLRERGRVLQRTNRSQQQPAQQSTVAPSKQRQAFGQKAQPLLKSFVQATTEVCGHCKED
HPIYRCSTFRDLSVPERKSVATKANLCYNCLKARHRVSDCESKTLCKVQGCGRKHHSLLHDSGTRSNQGQVKKEESSQCL
PVAPSVPAGGPATAPAQQSSAVSLCANVGGAKHQVLLSTAEVMVIGQADSTVKCRALLDSGSDSNIITEKLANKLKLKMD
RVDLPVSGLNDIQTRVKYLLSTKIESCVNAFASPVLDFLVVPRITSNLPVVEIDVAAWPLPPGLQLADPKFHTPGEIDLI
IGNEIFFDLVKSGRVKIGRNAPTLAETELGWVLGGAVPTRKAKPCPRVCQLNHFEEELNKTMVKFWEIECVHPETDLTVA
EVAVEEHFQRTHSRDAEGRFVVRLPFNNQKSQLGDSYNNARKRLDKLMISLARNPAKRVEYSAFLTEYLTLGHMKEVQHV
NDGGYYIPHHAVYKASSSTTKTRVVFDASAKTTSGLSLNDTLDVGPTVQNDLLSIILKFCTHPVVLTADIPKMYRQVKLH
QENCKYQRILWLDDDRQLKVYELQTVTYGLASSPHHATRALVQLATDEGKDLPLAARVVKRDSYVDDFLTGGSSVAEVVQ
IYKELTELLRRGGFGVHKFCSNRTEVLRAIPSELHEKQVDFGESDVNNTIKTLGLIWNPLEDYFVFRVPRPINEEWTKRI
VLSEISSLFDPCGFLGPIITLCKLVMQDVWVRALTWDQPLPVELSLRWRLIRVQLPAISKMRKKRCLIAPDAVNVQLHGF
SDASKRAYGGVLYIRSVNKRGEISVCRAASKSRVAPLKEQTIPRLEACGAKLLAELTQKVMAALEVPFDDVVLHCDSKIV
LCWLKKPPSALKQFVSNRVAAIQKLTREFTWRFIRSEHNPADVLSRGALPEDLLEHELWEDGAPELWEHQLPEDLSEPFD
ESQLPELKPAIVLTIVNPKPAIDFTRCSNYRRLQRSWVYVERYINLAVHKRPETSGISADEVARAEKTILAVVQKQAFGD
LLKLLRSNSNKQHSWSNLAPFLGEDGLIRVGGRLKYSAIPYDGKHQVLLPDGHHVTKILVRKLHEENFHVGQNGLLAIVR
ERYWPLRAGLLIKQVVTKCQICRRQNPKPGSQFMGNLPGYRINPAPPFSKVGIDYAGPFMLKTGGRGSRLQKAYVVVFVC
MVVKAIHFELVTNLSTDNFIAALQRFASRRGLPSDIHSDNATCFAGGNNELAALRELFNSQLHKNKLEEFCSLKGIRWHF
IPPRSPHFGGIWEAGVKSMKHHMKRVVGETKLTYEEMTTFLAQTEAILNSRPLCPMSEDPNDLTVLTPSHFLISRSGVAL
PEPSYADEKVGRLSRWQHIQYMQQHFWKRWSGEYLHQLQGRPKWNAGVKEFKVGELVLLIDENLPPQQWRRGRIVATHPG
EDGAVRVVTVKTATSEFKRAITKVALMPSVEPDASTGG
>BEL-217_AA#LTR/Pao 296-5555 via tfasty with BEL-611_AA, 5 frameshifts and 1 stopcodon. [Aedes aegypti]
MSTERRIKTLKGRIKSLTASLTSIKTFVDGFDEDTQSEEIPVRLESLCSLWAEYNTTQSELEGLDETALDSHIKQRTALE
ATYYRIKGFLLAQNKTPLNRSLSSTPNSDIQAPLSTSQVRLPDIKLPIFDGRVENWLVFHDLYLSLVHSSTALSNIQKFY
YLRSSLSNSALQKIQSIPISADNYAVAWNMLLKEYQNQARLKQAYVDALFDFSVLKRESAFELRSLVERFEANVKVLHQL
NERTEHWDILLVRMLSTRLDATTRRDWEEHSSSHGEVKFKDLTEFIQRRVTVLQSIQPKVVDTPPSVQGKKPAQRPVSSH
GANQLSPRKCLVCSDHHPLYLCGSFAKLSAEDKEKEVRRHQLCRNCLRKGHQSRECSSSTSCRKCRGRHHTLLCVNGLSS
QSTSKPLSAPQSKLPTSSSEDSDAPITSASATRMESSSCPSAGHQQKTVLLATALITLVDDSGVEHIGRALLDSGSECCF
ITERLSQRMKAQRQKIYLPISGIGQSGTHAKQKFSSIIRSRSGEYSTTIDLFVLPKVTIDLPATSVDTSTWNMPPGIQLA
DPSFDGTKPVDIILGAEIFFELFRVPGRIPLGEHLPVLVNSVFGWVVSGRSTERSFNPTVVANVATIADIHQLMERFWVI
EEDSSPTTHSVEEQACEKHFRRTVSRTPEGRYVVRLPFKENVLDRLNDNRRTAVRRFHLLQGRLDRNPELQQQYKAFIDE
YVALGHMHRIHEYDDPTVKRFYLPHHAVLREDSATTKLRVVFDASCKTPAGPSLNDALMVGPTVQEDIRSITMRSRKHQV
MVVADVKMMYRQVLVDPRDTPVQLIVWKPSPDQPLETYELDTVTYGTASAPFLATRVLIQLADDECSNFPLAAPVVKKDF
YVDDLFSGGKHAEEVIELRNQLEALLAKGGFQLRKWASNNEAVLDGIPPENRALSTSIELDPDQTIKTLGLHWEPFADCL
RYKVELPSDSSTHPLTKRLALSLIARLYDPLGLVGPVVTIAKVFMQSLWTLKDDDDKPWGWDRELPKEYQTRWMKYQSLL
PNLNKLRIDRCILLPEPEIIQIHIFSDASKLAYGACAYVRSITADGLVKVALLSAKSRVAPLQSRSIPRLELCGALLAAE
LYKKVQSSLQLDAESFFWVDSTVVLCWLNASPSTWNTFVANRTSKIQLATPNSAWNHVAGVENPADCLSRGLTADAIINF
DLWWHGPQWLQQPQQSGRxPIPPEQSSEALKEIRRSSVAVPSTPTDPSFIDIIVGKFSNFHRLIRVVAYCQRFLRNCQVP
SGERSIATILNVDELLEAEHCIIRLVQLQSFSQEWSQLKNNLPVSSKSRLKWFHPFVSSENVIRIGGRLGTAVQPYDARH
QILLPRSHPFSLLLVRNYHERHLHAAPQLLLNLLRQRYWVIGARSLAKNVVHNCIVCCRARPRLLQQFMAELPSSRITAS
RAFSITGVDYWGPILLKPVHRRAAPGKAYVAVFICFSTKAVHLELVGDLSTAKFIQSLRRFVSRRGLCKHLYSDNGRNFV
GAANELKRLVNNKDYQNAVAQECTAHQIRWHFNPPKASNFGGLWEAAIQSAQKHFVRVLGKNTLPYDDMETLLCQIESCL
NSRPLTPLSDDPSDYESLTPGHFLIGSALQSIPDVDYTEIPSNRLTKWHHVQKLFQQLWERWHLEYLSSLQQRTKWLSPP
VPIQKNQLVLLCEENIPPMHWPTARIEQVHPGSDGIVRVVTLQTPAGSFVRPVNKICILPIASSLDQQSATSN
>BEL-592_AA#LTR/Pao 745-6512 via genewise with BEL8_AG#LTR/Pao, 2 introns (1577:1805, 4031:4262), whatever they may be [Aedes aegypti]
LLTRRDTLLAALGRAEAFAANFDAQRDQAQLPLRLEYINGLWNSLETVQGQLEDGETTDQGRAGHATFRAELEPRLFSIK
ASLLSKLPPPPVISSAVPHPPxVSSTLSGIKLPTISLPEFNGDYMQWLAFHDTFLALIHSNPDLPDIQKFHYLRAAVKGE
AAQLIESIGISSANYGLAWQTLENRYSNDYLLRRRHLQALFDIPCMKKESAASLHGLVDEFERHTKILHQLGEPTDSWSS
ILEHLLCTRLHNDTVKAWEDHASTVANPTHLNYFTDLMCNYNCLIDFLQRRTRVLESISVNHHAPDLPPSSGGAAHPPKK
SYQHSQFRLSSCATTTNQGEKCIVCGQSHSVMKCQRFNNLSPNERQQLVSSKRLCHNCLRGNHFARNCPSSFTCRRCNRR
HHTLLHPEQPEGPQRSSSQGSASRSAPPATSASSNASSVVESSTQSMVAASESMPSVEASVTVQHPRENVFLLTVMVKIV
DEYGIEHLARALLDSASQPNLITDRMAKILRLRRHKVNVTVQGAGKLSNSVRESVFAQVQSRRGDFSCGVNFLVMDKLTA
NLPAQSVSTAGWKIPKDLYLADPSFNESQPIDMLLGAKHFYTFFPSAARLQLDTNLPLLVDSVFGWIVVGSAGATSPVQx
SSAVCEAVTVSMVSLEDSLERFWKTEELTTTDNYSVEERRCETLYSSTVSRNSEGRYVVRYPRKTGFDEIIGESQKNALR
RFGFLERRLERHPQLKDEYHQFMREYLSLGHMRLVDADDEERSRTYYLPHHAVIKEASTTTKVRVVFDGSAKTSTGFSLN
EALCVGPVVQDELIDIILRFRTFPVALVGDIAKMYRQVLIHPDDTPLQRILWRFTQLSPVQTYELLTVTYGLAPSSFLAT
RTLKQLADDEGEPFAKGAPALKKGFYVDDFIGGAQSVKEAILLRDELSELLKKGGFELRKWTSNRLEVLQGLNDEQIGTK
SSLEFKPHETIKALGINWEPEADVLRFDSQIRDDNAPPTKRSILSDIAKLFDPLGLISPCVVVRAKILMQELWLLSCDWD
EPVPEPVKSKWENYHQELSTISEHRVDRYAFLPDSKIQLHTFADASQNAYGACTYARCEDNQGRIRIQLLASKSRVAPLK
RITIARLELCAAVVAAHLHDRIKKATDIEISASYFWSDSSVTLQWLRSPPNTWPTFVANRVSEVQQYTHGCQWKHVSGIE
NPADLVSRGMSVEEFISSKLWHHGPNWLARPAQDWPVSIPPGVPAEELEMKSTVAAVQVSSSVHPIFLRWSSYNRLLHVV
GYIIRFVSNTRSKTRTNPSSRASPVPECLTVNEIANAKTILTRLAQEDGYSPELKEIRKVKKVSKQSPIRNMSPFIDPEG
VLRVGGRLNFALLPYQAKHPALLPTTHPFTRLIVEHFHRKLIHGGGRQLLTAIREEFWPPRGRKLVQSVVRNCFRCVRLN
PVPAQQQIGQLPAQRVIPSRPFSVTGIDYAGPLYLRPIHKRASPAKAYLCLFVCFSTKAVHLELVGDLSTQAFLCSLRRF
ISRRGRPAHIHSDNGKNFEGAKNELAELFARFQDQSQHNEIATFCSDEGITWHLTPPKAPHFGGLWEAAVKVAKKHLFRQ
LGSSRLSFEDMCTVLTQIEAIMNSRPLLPMTEDPNDLAALTPAHFLIGSSLTALPDPDIHSIPTSRLQHYQQLQQHVQRF
WIHWRQEYLQELLKDTRGWKRNEQIVPGRLVILVDEMQAAIRWPLARIESVLPGKDQLARVVLLRTSRGIITRPITKICL
LPCSSVFQN
>BEL-235_AA#LTR/Pao 50-6009 via tfasty with BEL-610_AA, 11 frameshifts and 4 stopcodons. [Aedes aegypti]
MQSAKVCGKCSSSGITGGMVGCDMCDAWFHPGCVEVSETNHNPDKTWRCTRCVNDDVREVASQHTSKSLGSSASSKARRE
LLLQQLEEQRALKLKQRAEEDEIRKKRAEEDEAFLQQKLDIILEDDIESRSSRQSSRASRRKVEDWLNDGQGGQRAAQSK
SIPQQPVAQQFASTSTAHDQGQVPYIFAPPTGVPTSTSTPQSGKVVTALEVDNPKLSVPQQLGAFSYLKDTSRDNYGIST
LASTQLVTAGGNIQSFPLHASPQVPQVCNNLESLRAKQSFADTKVTFSGQLPQTVSSKPHALFGPQIGYAPTSQILSNVP
PGSQSAIPLSTANVNSMPAVLPLSSAVSYASVPLPSSSTAVPVLDATQRVPITNVTTISSHFGQTQPSLQQFCSSPMGTV
YQPAPSSVQLAARQIMPRELPNFSGDPQDWPLFSSSFYNSTAACGFTDAENLARLQRCLKGHALESVKSRLLIPESVPHV
METLRMLYGRPEVLIHTLLRRLRSVPPPRTENLSSITFGMAVRNLVDHMYVAQLSDHLRNPMLLHELVEKLPSQLKMQWS
WFKRSQVDVNLATFGEFMTELVNTASDVTLPSDVQQSRPNLTGKDKQKLYVHAEARGSQATTRTLDTIKCVPEIDKLKRS
CCYCSNEGHEVAACPQFKALDVDGRWKAIRSKGLCRICLIPHRKWPCRSGKECGVEGCRLRHNALLHSRAADVVTRQNAP
ESRTPSSGVNVVQQNHHSTLNYCLFRYLPVTLEVNGKQVDAFLDDGCQTTLMEAGLAADLDVTGPVEPLWLGWTSNISRE
EKGSQRITVKISGTGHKNQYQLSNVRTVQKLQLQGQTFHYDELQKIYPHLRGLPLSSYDEAVPRLIIGIEHAQLLTALKV
REGGSSEPVAVKTRLGWCVYGKQAGNSVTVERLYVHTVEEQADNRELHDLMKKYFAVEEAAVATPIESADDNRARRILEQ
TTRRTGEGFETGLLWKYDNPVFPDSYPLALCRLQSLEKRLDKDHELRTRVISLMREYETKGYAHKITQEEMELTDANRTW
YLPLGVVKNPKKPQKVRLIWDAAARVHGLSLNDMLLKGPDMLTSLFAVLIRFRQKSVAICGDIREMFHQIRIIPQDKQAQ
RFLFRESHKELPQIYVMDVATFGATCSPCSSQFVKNKNAQEFQPQFPRAAEAIIKAHYVDDYLDSVDTTEEAVQLVNEVK
HVHALGGFEIRNFLSNSPEVLRQLGETDCLQKKSLDLDGSSHVERILGMVWKSTEDLFTFDVTFKEDLNKVLVQGVTPTK
RQVLRLVMSLFDPYGFIAHFVVHGKILMQHIWRSGTEWDDDIPLELQGMWNNWIGLLGRLQEVEVPRCFFGESDSRIPSS
IQLHIFVDASEVAYACAAYLRIVQDGVVRCVLVAAKTKVAPLKPLSIPRLELQACVIGCRMMETVQSALDLTIEKRYFWT
DSATALAWIKSDSRRYHPFVAFRVGEILNNSSLDEWYHVPSKQNVADDATKWGNGPNFEANCRWYIGESFLYKPMSEWPI
QVGKNWKTDEEMRVVFHTHQKLPPQTINVNRFSSWYRLLRTTAYVHRAKADFSGSRSALDKSSGCIRISFVDDVGVIRMN
SRISNSPSISFETKYPVIPPKNHVMTSSLVDSYHRRFLRMYNDTVFNELGSASGFQSRQFIKRVASDCQHCRVKSPHIRA
FSYTGVDYYGPIMVKQGRSLVKRWVASFTCLTIRAVHLETVHSLTTQSCVMAVRRFASRRGAPAAFYSDNATCFKGASNL
LSEQIQAIHEHCAVTFTNAKTTWIFNPHLHYMGGCWERMVRSVKAAIAAVAEHSRHPNDVLETVLLEAEAVVNSRSxLTF
RxxCRPRSLTLNHFTLYGTGIVQPRTAFKWKVDSKGRLKLSQYLVDQFWKRWVREYLRVERRTKWFQPTKPLAPGDVVVV
VDVNKRNGWLRGRIIEVFNGKDGQVRSARFRRVRLELAHAAGRKVGLSERAGQPQGPRYxRFSGTSRAG
>BEL-32_CQ#LTR/Pao 19-1599 Fragment or just gag. [Culex quinquefasciatus]
MVIAESVTMEKLEHLRTVHLLRVNGVLAAAGKLAERKASHSEATERLDQLHGLAGDFRWTQQRIEEILDDPEAIATARFK
AEEFKAAYQGAKELLEKHISSTKPVRAVPRNGSTGSLLEEIRKFSIEVKEWNATCVGQFGAVREGNDDSNGSNSVSNRAP
SSGPSTTTNKNGAKKINGQSGAVGCGDADGKQLPSCAPVLGPTAAPVMDSALEDYNIEPTGGIQISNWLPQSEKLLPPIE
VSTFHPGWTSWNRSKDGPETFSEDVEKASVSDNNAKMEARDSRGAQRKAHILPTEAVSVRGNDAALLQASLGSKVRARLG
LPHSSEKVVATGQQLQATSAHHVSQRENGRLIKREQEHCGSARQRPEQQDLARSIDVFRASGQWKQVKINGGVPSAHTVS
SASNVPRNQSINSMEEQANLDKITFTQNRTGSHVGRTSRKLTLSRALLENTDRKSTLQQGTTTRITWSNHSRFDDQRIIV
RLLLYDSVPAPESGNVTTGTTQRGQARCHGRETPRKGLRLRCLKAGE
>BEL-20_CQ#LTR/Pao 24-6590  [Culex quinquefasciatus]
MASNPRKSFVRQTRSMTRAAQEAANLQIGDAQDDAAKPFEPSVVEPERGDEQDCAGCTRPNNAELYMVRCEKCELYFHFS
CANVTTATVNQPPFVCRTCVPFRPRSTRSSGSHVSSTRSARIALELQQMEEQFRIQEALTKERLAQLERQYLYSSKKYAL
LREQEEDGGRSVRSRDSRASTSRVEKWINAQAETGNTGPGVNKETTESDDHVQPLSEDKADSLHVKFTSTPLASPNASFN
ESPYVSLSISSLLPDSLEESSEKSIPEGPKDPGQTAAEIPPSEVPEPPTTMESMLKLLQISLGKPQNTGAIPKILKVTST
AFEEWRNSMQRKDLDPIPEELSEETKKNEQNLLVLLQQLEDQRAEDQQLQRQREEQLKRKLQQQEREQAKQKQELQRRLQ
QVEAEQKEEMQRLLQQQQRELAEQKRELKQRLKEQKQQQAKQQEELDRLRELERLQKLAESRDKNHSSAAGRNGTVDKSR
STESTTGTTSVPRVDDDLPPPSNERSRASANFGSSSVRSSRSSSSRSSTLTTPSVVPSVESFPSLVPPLPAPPPYQGPTS
QQIAARQVVNKELPVFTGNPVDWPIFISSYNHSTLTCGYTDNENLLRLQRAIQGRAREEVSSLLLNPSTIPQLLTSLKLL
YGRPEQIVHTMIEKVRATPAPRADKLESLVSFGLVVHNLCGHLKAIGMEKHLSNPILLHELVAKLPSNVMFNWALYQEQL
PEVDLNVFGDYMSKIATATSGVTLFAAKAAKDDFRPKKEKAAYVNTHSTAEQGQRKGDDEIKEKPTDRPSSNIKVCPMCD
NSGHLAANCSKFSKLCLDDRWKLVKEKRLCRRCLVAHSRWPCKSDPCGVQGCQKKHHPLLHYEQAPTEAKRSEPATSGVV
ALHRQPTISTLFRMLPVTLYGKKGKVNTFAFLDDGSSVTLLERKLAATLGLEGKQASLCIHWTSGIKKNFSETREVELEI
SGADRPQRFVASNVYTVDKLGLPEQTMDVAAMAEEFAYLQDLPLLSLQSAVPGILIGLNNVHLLATLKLREGRKGEPIAT
KTRLGWTVYGSMPAATQSFAHRQFHISDEQAEVDLHEYVKSFFAVESLGVMAVPSEESVDDQRANKILSETTKRVEGGRF
ETGLLWKQDYVEFPDSRPMAEKRMKCLERRLGRDPALYDQVRKQIADFQSKGFAHKATAAELDTFDPRRTWYLPLGVVLN
PKKPGKVRVIWDAAAKVDGVSLNTMLLKGPDLLTPLLSVLFQFRERQVAICADIEAMFHQVKIREPDRSAQLFLWRDSPD
KPLETMVTDVAIFGATCSPAHSQYVKNLNANEHEADHPKAAAAIRNKHYVDDYLDSVDTADEAVAMALEVAEVHAKAGFH
IRNWISNDKTVLARIGAVNPTTVKNFVIEKENGFERLLGMVWLPDEDMFSFALSLREDNMKLLTGEVAPTKTQLLSIVMS
IYDPNGLVAVFVIHGKILVQDVWRSGVGWKDKIPEKLIGRWKQWIALLRKIETVRVPRCYFKDYEPASLKTLQLHVFVDA
SEQAYSAMAYFRLEDRGQVRCSLVATKTKVAPLQLLPIPRLEVQSGVTGSRLRKTIEDGHSLPISKVVFWSDSKTALQWI
RSTDLRRFRPYVAFRVNEILSLSKAAEWRYCPSRMNVADEATKWGKKGPTFDPDAQVYVCHKFIYDQEEDWPEDCLERVE
ATEELRPAFMFSHFVVMPIIRLELFSRWERLLRMVAYVHRFLARRLKLKQETCPGALTREELQKAERSLWRLAQSDAYPD
EVATLNQNLLVPAEKRECLETSSSILKLSPLLDDSGVLRAGSRLEAAEFAAFDAKFPVILPNKHRVTWLLVDSYHRRFRH
ANNETVVNEIRQKFNIPKLRVLIRQVASKCCFCRIKKAIAVAPMMAPLPRVRLSPFVRPFTFTGVDYFGPVLIKVGRSVA
KRWVALFTCLTIRAVHLELVASLSTDSCKKAIRRFIARRGAPQEIYSDNGTNFQGASGELSKELAKVNHNELSSTFTDIH
TQWRFNPPAAPHMGGCWERMVRSVKAALGVIPVERKLDEESLVTLLAEAEHMVNSRPLTFVPLESADSESLTPNHFLMLS
SSGVQQAVKDRVGVGAAIKNSWNSIQHALDEFWCHWVKEYLPTIARRTKWFEEVRPIKEGDIVLVVDEGHRNGWLRGRVA
RTYPGKDGRVRRADVQTSKGQVGSAGRW
>BEL-20_AG#LTR/Pao 15-5264  [Anopheles gambiae]
MTQAKASSEESFRGFSDSETENSTIIDNSAMALALAKEERDGLIECLVRLEKFVENSGIVELEQVEARLKRLERCWEHFV
KISKEIRQFDDQHNKKENFAIFADFDERVCVLTGKLKRMQRSSNVPKKEENMSNVTNTSTGGVKLPKMALPEFQGKFDEW
LQFRDMYEQMVHNNITLSKVEKLYYLKSSLKGEALKVIEAFPICAASYDAAWDAVVSRFANPYIQKKRHTNELLNWPRMK
KPTAANINAVIDGFERHTKLLQQLGETPSTWGIMLTQLLTSKLDEGTQREWERTVEAQDDANYNDLIKFLRGQVRILEAL
GEDKIEQRNQPLPTSKAPKLAIHVTAGEKKLKCNVCGAEHSTAKCDEFISMAVKERIKIARAKELCLNCLGKGHFRNQCA
SKVRCRACKGAHHSLLHMWLPKENTMPSTSAQSNNNVDETFVNEAQGANHGNATLTMAVTRSGVSCGVLSTALVNVKAKN
GMFIQTRALLDSGSQLNVLTEKLCRKLGLQRRASGIKLTGIGKHEVSSDIAVTAEVASQSNNYARRMEFLVMDGITHNLQ
PVHLPNACIPNEGKIADPGWHQGGEIDMLLGSEHFFEFLALDGGRPGVYRMNDSHPYFVNTVFGWVLTGPKQTQQKTSAI
CSHVSIAEQIERFWSIEEVCPENSLTQEEKDCEQSFVTTHSRDETGRYIVKLPIKLKGWERIGESLGTAKKRFLQLENRL
SRDVALYENYCSTIKQYQELGYLVEVSPDMSQGDNVKPCYLPHHPVVKLSSASTKVRPVFDGSAKTSTGFALNDCLLNGP
VLQDTLFDLIVRFRSYAIALIADIEKMYLQVKVHEEHTPLQRILWRSSQQEEIKHFELQRVTFGLTSSSFLATRVLFQLA
ADEGERFPLGKRALQESFYVDDYIGGANSDAEAVQLVSELRQLLEKGGFHLRKWNSNNKMVLRNLSPEEKDKCKLVSIGP
EDQVKTLGVYWDPTTDSLGVAADFDDVSNEPPTRRNVFSFIAKLFDPLGIIAPIIAWAKIMMQRLWIATKEWDDPIPVDL
ADQWELFKKQLYLVKEMRIPRYVMLLDHTNVQIHSFADASEVAYGACVYLRVTNREGTVKIGLLAAKSKVAPLKKLSLPR
LELCAAVLGAKLWKTACIALKQQITESYFWSDSTIVLNWLRAPSYTWATFVANRVATIQDLTQGNHWQHVKGSENPADIL
SRGALPNQLTKEWFQGPHWLSNNECTWSFPEEKSDIDESQLERKRQVAVMTMGVAEHPFLDRYSSYWKCGRVAAYCIRFA
QRCRNEPLVSGPITYNEFIRAIRRLVVDLQRIEFHVEMRELEEKGELLSTSKLRKLRPFLDDEGVLRVGGRLRQTNIRYN
TKHPMILPAKGNFTRIVAKAYHEMALHGGPRITLATMRQDFWPLNGRILANYIHRNCLTCFKANSTPVAQPIGQLPVKRV
TPARPFLTTGIDFCGPVYLKPVHRRATSQKAYIAVFVCFCTKAVHLELVEDMTTSAFLAAFRRFISRRGYPSDVYTDNGL
NFRGAQRELNDLFRLLSDDSFQATTREETMKCGITWHFIPPRAPNFGGLWEAAVKSTKKTLTKLFGSQRLSFADMSTVLT
QIEAQLNSRPLTPLSEDPEELNVLTPGHFLIGEALLTLPDANHVTTPENRLKHFEQLQQLVQRHWQQWSKEYICELHNVS
QKGLRSKKIEIGQMVIVKEDLPPNEWCLGRVIGVHPGSDQVVRVVTIKTSKGTYKRPVSRVCLLPDSED
>BEL-20_DTa#LTR/Pao 794-5662 via tfasty with BEL-9_DEl, 2 frameshifts. [Drosophila takahashii]
MCPTPLDVLKQKRSNIRRSISRIGTAVAKTEKVEKPDAALTPAELTCRQTILEAYFKQIMAVQTEIEALDSTEEQLNYRA
ELEDMFIAIKVTIKDQLGDDVHNSTPLAHDTLLRPGPPSSLKLPTLALPTFAGEYSEYKNFITTFQQVVDRQEALSSIEK
FNHLINCLRGAALETIKAFQVTPENYTKALLRLKSRYDNPTIVFLDNIASLFKLPTVTTENSVQLRSLVDNASALFNSMR
SLGSEAQIAQAMLITIVMEKVDKRTRELWNESLTFATLPSWNACLTLIERHCQHLESSIHHFGNTNTAQNTSGRMRQPQA
PRMGHSFTCSTQTCPICSGRDHRIFRCPRLQNMTPAQRLEAVRTKSLCTNCLGKAHQCSRLHHTMLHFDPSGQESRSPRR
PSPPNAPPQHHVAEAVTHAHVDTHHDQVILATAIILVQDAVGNYVPGRALLDSCSQVNFMSEDFAQQLRLPRSKGHIDIR
SIGDSFTRIKHRTSTVVKSRFGDAELPVECCITSRIAYQPDAEIDISSWNLPDNAPLADERFYQSRHIDLLLGTETFFTA
LSIGQIKLGPHLPMLQKTIFGWVVSGRTGNQGHAAHAHSFLSSEESINLNLERLWRIEEISTTPLTLTPAQAKCESIFQK
SVCQVADGRLMIRLPFKDDPNLLGRSLETARLRFASLERRLSRNANLRAEYTKFMDEYERLGHMELVTSPLLNEPHYYIP
HHCVFKLNSTSTKLRVVFDASCPTSTYKSLNDILLVGPTIQPDLFTLLLRFRTHRYVITADVVKMYRQVLIDPAHRKFQY
ILWRSHIDQEIRTYQLNTVTYGTASAPYLAIRSLSHLADQHASSHQIGAEAIKSCFYVDDFLGGADTLDQLNQIRSEVIA
ILTAGKMELAKWHSNHQDFVNDTTVKELNLDDYATTSTLGLKWDQREDVFKFSFNCSTAPERITKRTILSVASSLFDPLG
LVSPVIMVAKILLQEIWLLRLQWDESVPMTLQQAWLSFVSSLRCCIYARTRLADGHVEVHLIASKSRVAPTKKKTLPQLE
LCGAHLLARLYNQIKAAFLQHTPDTFLWTDSQLVLHWIRQHSATLSTFVGNRISDIQEFTRDCHWRFVPTRHNPADMISR
GCNLAELTKSTWFHGPTFLSNPPTLWPPNVHGNLDVEKPFTTGPLSPLELRRAMLCVAWNLQQRYFIEEITLLQRGAPVR
SHLKFLSPFLQVTDGFNLLFVGGRLELASIPDTHKHPILLPAKDVAVVNYVRHLHLRNYHAGPKVLVGLMRLEFWVVNAR
DVARRVVRNCVHCVRYRPKLLQQLMGNLPVERLTLSRPFARCGIDFCGPVHTYLRVRGKMPVKSYIAIFVCFATKAAHIE
IVGELSTDSFLGALKRMIARRGLPSDIFCDNATNFVGASNKLQDLKDFFFSTKTQQDITSYCTNEFVTFHFIPPRAPHFG
GLWEAAVKSAKNLLCRTLKDARLTFEELSTVAAETEAILNSRPLSPHSSDPSDLAVLTPGHFLTGDSLRALPDWPVKDDQ
LNCSQRWKRVSAIKQHIWRRWSTEYLHELQAKSNWSTGSSNIAVNEMVLIHEDHVPPHRWLLGRIEAAIPGKDNHVRVAD
VRTSKGIIRRPIHKLARLPINLK
>BEL-26_CQ#LTR/Pao 809-3880 (N-terminal half) [Culex quinquefasciatus]
MDHKFIVNPNGRCRSCTNLDDQHMLMCSHCDRFFHLQCVGLGRMPNKNENWHCIKCDAVAKTLQSFDQKVKQLEKSIEDV
STKPSTENKDILTCQFLQGIVNKLEGLSVQPRTADSFLFRQTLIDLPKFNGSFKDWPKFKQTFFETTKLGNFSDIENLNR
LEKCLKGEALLRVNSLLSDSSNVSKIMNVLEERFGSIEQIYNGLMNDIIKVRNPSYDNPKSMVDFISAIGDLVINMESLH
HEEYLNDPRLVRDLMKKLPSGLQNQWLDNINEEKTLSSPTNPYKAPTIKDFYTFLKPKEKVAIAKLVDSDSSNSRTKSER
ILYAQDTCKTSCIKCNLNSHKLIQCNEFKNLTPEEKQTFVMEERLCFSCLGANHLAKQCRFAKDCNIEGCKSKHNRLLHV
KRTENTDSEIEDSGNEHSVNCHVKKYNNVFYQIVPVTLINGSNKKETFAFFDSGSSVSLINAKTAVELQAKGAKRSMTLA
WTNGETQEDLNSMSVQINIQALNGRKFNLKDLRTVNDLKLPTQSLDTNRLKKQFPHLQGSKLASYNNAMPTLLLGLPHAY
LFKSIKELSGKFNEPIGRMTKLGWVLFGRSNFGKIKKNHLFTIQEVKKNLVSKEDAHENYSQRAKEQFGQISVREFYQDK
KDEESEALQNQAIIVGAISPINCVQKLTNGENIKKVHILNDQHKENLDDLKTETKCVLYTCDIPIKLNFKMTCLKFDIKL
IKQYLPIVMNFPIKEINIYGQKHDDNNRRCTMWNENDSIFSINKETKLQPKVNSDRCELKNVIFPANDTDINFNEKSRFK
NIDIVIPENNVLVQNSLNINSEIIGTNFFKKKEFNKASNTTTQTTMINSASSSVLNSTKYTKRNYLAYVGSLYDPHGLIL
HIKKHANIVLKDIWYSSAHWDDCVPAEIMYKWQVWIAQLSSFKNLSNLEPNENNIIKRQINVYFGNNHKAFIRVQSFCDK
NIIKTTTRLVKSNIETEVNISTPRSEIHDYMFKTKLSNTILKSHTFGTNQVTFRSDSKRITLEK
>BEL-21_DAn#LTR/Pao 989-7947 via tfasty with BEL-21_DTa, 1 frameshift. [Drosophila ananassae]
MSTKEKIAIIEDQVRLTRQVDALLAKNSYLEEDRDSLKNIELRACTNHNHLVQLGAVEHEYFTKNHFDSMLSKFKSAKEK
IKKIIGQDELFSRLEGAIKNLEDYLEQTYIEIQERKAETFPIRIKKLKMFLSRVETVSDLINIEGLNNKYMPKIIELRED
VEIHIELMNNKIEVGRLEKVEGSNPKMDELPTLPKIEVPSFFGNSKDWDHFYELFKELVHSRMDLSPSLKLSYLKSALKG
EARNVVSHLLLGSGNNYDAAWELLIKRYENNRKIFSDQLNRLIDLPKINLDSYRHLKNTIDSINESIYMMRLKANLTEES
DCIFAHIIIKKFNIEALQQYEGQVKKSNDIQNLKDVIEFLDQRLSSLTSVGNELPTMKNNTKNHTNNQACPMCKMPGHQL
SFCYKFKALSPQEKTNMVKKLNWCYRCLKHSSNSKCPSELVCSYCQKLHHSMLHFKKENVNTCMTSEPALLATAYVQIKG
QDGEFGKFRALIDNGSQSTLISEEAAQKLKLPKIKAHTEISGVSATGACVSNHKLKLTIKNNIKYSKEMSTNAIVLPKLM
KCLPTNTIFINKSDWKGFYLADPNFDKPGRIDLVIGADLYPQILLPEITKKGMLLGQKTIFGWTVSGCTKSRGSKSIVAT
SIELKQMDRYWEVEEEDSNDLETETCETNFKKCTKKDPNGKYIVAIPFKEDTTLGDSKNQAMARFMNLEKRLQKNEKLRI
EYSKFMKEYLDLGHMVEVNDEGKYYLPHQAVIRESSLTTKLRVVFDASAKTSNKKSLNDIMWVGPRVQKDIFDIIVNWRK
WEYVVSSDIEKMYRQIKINHKDQKFQYILWRDDPKTTVKTYKLTTVTYGTASAPYLATRVLADVGENCENKMIGEIIKND
FYMDDLMTGANSIEDATTIVELISKELANSGFNLRKWVSNNAKILEMVENSGDNKIVSIREDEFVKTLGLQWDPSKDEFK
FTVCCSEPKMLTKRFVLSTLSKIFDPLGWLAPVTIVGKIFIQKLWTAGINWDQELVNEDRKEWEEYKSGLEALGQIRVPR
WINFKSELCIQIHGFADASEKAYAAVVYAKVGSEVIIIASKSKVNPIKNRKTIPKLELCAAHLLSKLMMRIMEAMKNYKV
ELYAWSDSTITLAWIKNGLNKIKFIRRRTDEIRELKNAEWNHIRSEDNPADLASRGVSADQLVNCNLWWRGPKWLTDPKS
QWPQSPIMEESLILNTLVKTKDDAIYELMQKFSCIHKLTRVIAYVIRFLRMKTRTNSNPKFLTAKELKEAEMIIIKKQQE
FQFNKEIKYLRTGKEIEISSKIIGLNPFLDINGILRVGGRLQNSKAAFEVKHPIILDKGNISTLIIRDAHKNTLHGGINL
MRNYVQRKYWVIGLKNIIKKQLRECVKCSRYRKITVEQIMGNLPDYRVNMSYPFLNTGIDYAGPYLIRCSKNRGQKTFKG
YIAVFVCMATKAIHLEVVSDLTSDAFLAAFKRFLARRGKCANIYSDNGTNFVGASRKLDEELEKAIRENSKIASQLQKER
IQWHFIPPASPHFGGIWEAGVKSMKYHLKRVIGDNVLTYEEMSTLLCQIEAVLNSRPLYSSSEDVDDNEVLTPGHFLIGR
PLLDAIEPNDEIGKINNLDRWRFIQKIKRDFWNKWKDDYLNTLQQRYKWKRNSSNIKKGQVVILKDDSCHPARWPLAKVE
EVHKGKDEKVRVVKLRVQENVVTRPLNKICPLAGVNDLDDAEERQSRSNPPKARSSRFSKLGVMLALIMLSLCCQLTNAV
PAIRDSKYGFEEIPKSSSIYLDPMGDIEVVSSSWNLVIYYDMEAYFEMIHKGKNIITKMRLVCEKLHGFEDQCNLILENT
LKQILELEENNKLFMTHNKSRQRRAPFEFIGSLYHILFGVMDEDDRVQTEENMKNLLNNQESLKELSEKQTSLVDSTTNI
LKKTTEEVNTHFRSMNKRIENMTVILQESYYVYKESIKFFMVTKELSRLIDECEKIQAGIISLLIDINHGRLNTNILRPS
QLKNEIARIKDVLSENLILPGKRSGTELKDVYTLLTARGLFVDKKLIINAKIPLFGRHASKLYRVISIPVRAENQTILAQ
IDAEYLVYNFEIDSYHLMTESTIAKCQKWQANKRVCDGSWPWSNGNDNSCQLGPLKPNRPSNCFYKPVLSSNSFWVELEK
RSSWLFKVEANTKLRLQCGHSKIQIIDLPEQGILTISSECTARTDDKILIAQHIIETESQEALASAYIGEINEIPKIAWD
PLKPPVMNHTAEIAHLAKQIEDLKAQNLELKNIDFHHVSGHSSLILIMIIITVLIISYVRKLKSRRQLMAIALPTPMPNV
>DIRS-32_NV_yr#LTR/Ngaro 610-1518 [Nematostella vectensis]
FLWRLFASFPGYLYQLDERAKLVSAAAYAASTLGTRRSQWRVYLRFCSAYGLVPIPAQHRTIVRFLIHLSTYCKYSNITN
YLSAINILHRHFGYPVTFQKLFAIKLITRGLRRILGDAREQKLPITPDILHRIHPLLSDDADSGFLAAILVGFYTFFRKS
NLVPKSTKSYDPSSNLSRSDISIRAWGMVICVRWSKTIQFKQRRLLIPVVRLTAGHPLCPVQAYERHLRCYPAPPSSPAF
LQSSKGASAPITHESLSSKLRRALTATGLNASMYSAHSLRRGGASYAFKCGAPVELISLQGD
>DIRS-31_NV_gag#LTR/Ngaro 128-981 via tfasty with LvNgaro1_gag, 1 frameshift and 1 stopcodon. [Nematostella vectensis]
DSRSGAAGNCRVVQAAPTLSININSTPGEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPSLPVDARVSVQVAKI
WQNEFVEFGLLLANPILxGKYQLTLSASQNGAMPALNVEPVSKTKKYLSIENWISCFHIFVGVYTQKYCHEAPALMKYGE
TIQDLASRGHDWRYYDENFRFLRQGQPSAYPWQNTHWELWLRSQRPSSAKPQNESRNLRGNSLVRGYCYRFSRGNPCSGD
CGYKHKCHKCDGDHRPGACTFRAPKRTSNHSPAASPQAKPQQPRS
>SpNgaro1_gag#LTR/Ngaro   from_retrobase [Strongylocentrotus purpuratus]
MPKSTKKTNQRVTSKAATKTTAKAKPRKRRASKATSPAQFPLPAASASNDDALPVVPARIQEPTINEEPGVQDGGVNGES
WPVMAIDDFDTNPSMFTSEALVSPAPVTSTGVPTAFTPGTGFPVPGQPQMLAGVGDDLGSSIAVTLKEKIWRGEFIDLGA
LISPSMSDPSVDEGLTLTFSPASANFQLRAPNRKTAITGIPQWTSAMLVFVSVYAERHTCRVRELLKYISIVRTAASCGY
NWCDYDLQFRLRQARQPERSWAVVDAELWLLVATAYARPDSRENFRPFSGRQSQFRGAQRPRQQLSGPRRNGRSALNRDG
YGSATASPRAQVCFAFNASGRCGRGRGCRYAHKCDRCGNTSHGSFACNRPQLAATKPSSSPNPN
>SpNgaro1_yr#LTR/Ngaro   from_retrobase [Strongylocentrotus purpuratus]
NCRFSVPLSDDPFSTSGPQCRATRDPHSYPSLEQLSRERAVLLSSSRAQNTMRTYHTAWQTFQLFRSNYNCNASTPPTIE
QVALFISYMSWSNYSANTISTYISALSFHERSHNREDITQNFPIKRLVEGCRRRHARLDVRCPITMPLLHKLIATLPLVC
QTSYHTKLFTATFLLAFFGFLRIGEFTSQGRSIPLLEADVIVRGNPPQRKVSVRIRSSKTDQRGRGCVILLPESRSLCPV
KAIVGYLEARPQPVPTPGIDQGFAFFRQFDGSPLTRQAFNRVLHRSISFLGLPAHYYTAHSFRIGAATSAAMAGFSDSHI
QKMGRWVSGAYRGYIRLPAGEV
>SpNgaro1_pol#LTR/Ngaro   from_retrobase [Strongylocentrotus purpuratus]
SPLPTRGRTAGRIFVPSAGGNLNFAELNGQDSNYQAPAAMGAQHLIGTDTVAQPRVRGPKFVSHSTPPAGAVGGEAADMR
TNAIDAEIHPMAPLPATAPNLQLPNRALAPTPIKLKPMLPFLHSYTNQSDAKRLISGFTYGFSLSFKGTRVQMSCKNLKS
AILHHQIIMQKIEKEVLLGRIVGPFTSIPFPNFRCSPIGVVPKRTPGEFRLIQHLSSPRGSSVNDSIDKEECNVSYTSFD
EAVYMIVKLGLKSFMGKADIKSAFRLLPVHPVDFDLLGMCIDGKFYYDRCMPMGCAISCAMFERFSSFLEDCCRRIAVTE
QVLHYLDDFFFAASSFEECQRIMLCFQNMCNDFGVPLALEKTEGPTRVITYLGLEIDTRLCQVKVPADKLEALRCMIRSF
STKSKLTLRQLQSLIGSLNFVCKAVGPGRAFLRRLIDMTRGVSLPHHRIRLTSGAKADLAAWEAFLEHFNGTVMFADNVW
RDNNCLQFYTDAAASIGLGIYFEGCWAQAKWPEYVREANFSIAVLELLPIVVGVHLWGDRLNGKRVTFWSDNQSVVAVIN
KQSSNCKIIMRLIRHFVVLCLRWNIWFKAMYVPGHTNEIADSLSRFQMTRFRHLAPNAEQQGTPIPTPLWSSLVGSVPSC
>DIRS-25_NV_yr#LTR/Ngaro 3084-4151 [Nematostella vectensis]
RIVPFSLPGVQASGPVRGVPSDSNSTPTASRADPSSLELRCRTYLLEGLAPSTRRTYASAQRKFVTFCQQLGRLHSTGSP
CPVDEWTLCLFVTHLAASIRYPSFKVYLSAVRSLHIESGHADPHSNCERLQRVVRGIKRSQGPSGSPQRLPVSYDIMLVI
FRSLDLALLDHAMFWAACNLAYFGFLRSAEFTVPNAKSFSPALHLQLSDLAFDERSNPSCVRVWIKASKTDPFRKGCYIH
IGRGTYPLCAVDALSTYIIRSGDIQGPLFQFQDGRPLTRAKLTTWLRSIVAAAGIPXNFSSHSFRIGAASVAAQNGIPDH
LIQTLGRWRSGAYQLYIRTPASALVGASRRLASAV
>MVV_env#LTR/Lenti gi|583801|emb|CAA01216.1| env [Visna virus]
MASKESKPSRTTWRDMEPPLRETWNQVLQELVKRQQQEEEEQQGLVSGKKKSWVSIDLLGTEGKDIKKVNIWEPCEKWFA
QVVWGVLWVLQIVLWGCLMWEVRKGNQCQAEEVIALVSDPGGFQRVQHVETVPVTCVTKNFTQWGCQPEGAYPDPELEYR
NISREILEEVYKQDWPWNTYHWPLWQMENMRQWMKENEKEYKERTNKTKEDIDDLVAGRIRGRFCVPYPYALLRCEEWCW
YPESINQETGHAEKIKINCTKAKAVSCTEKMPLAAVQRVYWEKEDEESMKFLNIKACNISLRCQDEGKSPGGCVQGYPIP
KGAEIIPEAMKYLRGKKSRYGGIKDKNGELKLPLSVRVWVRMANLSGWVNGTPPYWSARINGSTGINGTRWYGVGTLHHL
GYNISSNPEGGICNFTGELWIGGDRFPYYYKPSWNCSQNWTGHPVWHVFRYLDMTEHMTSRCIQRPKRHNITVGNGTITG
NCSVTNWDGCNCTRSGNHLYNSTSGGLLVIICRQNSTITGIMGTNTNWTTMWNIYQNCSRCNNSSLDRTGSGTLGTVNNL
KCSLPHRNESNKWTCKSQRDSYIAGRDFWGKVKAKYSCESNLGGLDSMMHQQMLLQRYQVIRVRAYTYGVVEMPQSYMEE
RGENRRSRRNLQRKKRGIGLVIVLAIMAIIAAAGAGLGVANAVQQSYTRTAVQSLANATAAQQEVLEASYAMVQHIAKGI
RILEARVARVEALVDMMVYQELDCWHYQHYCVTSTRSEVANYVNWTRFKDNCTWQQWEEEIEQHEGNLSLLLREAALQVH
IAQRDARRIPDAWKAIQEAFNWSSWFSWLKYIPWIIMGIVGLMCFRILMCVISMCLQAYKQVKQIRYTQVTVVIEAPVEL
EEKQKRNGDGTNGCASLEHERRTSHRSFIQIWRATWWAWKTSPWRHNWRTMPYITLLPILVIWQWMEENGWNGENQHKKK
KERVDCQDREQMPTLENDYVEL
>HIV2_nef#LTR/Lenti gi|9628889|ref|NP_056845.1| nef protein [Human immunodeficiency virus 2]
MGASGSKKLSKHSRGLRERLLRARGDGYGKQRDASGGEYSQFQEESGREQNSPSCEGQQYQQGEYMNSPWRNPATERQKD
LYRQQNMDDVDSDDDDLIGVPVTPRVPRREMTYKLAIDMSHFIKEKGGLQGMFYSRRRHRILDIYLEKEEGIIPDWQNYT
HGPGVRYPMYFGWLWKLVSVELSQEAEEDEANCLVHPAQTSRHDDEHGETLVWQFDSMLAYNYKAFTLYPEEFGHKSGLP
EKEWKAKLKARGIPYSE
>MVV_gag#LTR/Lenti gi|583798|emb|CAA01213.1| gag [Visna virus]
MAKQGSKEKKGYPELKEVIKATCKIRVGPGKETLTEGNCLWALKTIDFIFEDLKTEPWTITKMYTVWDRLKGLTPEETSK
REFASLQATLACIMCSQMGMKPETVQAAKGIISMKEGLHENKEAKGEKVEQLYPNLEKHREVYPIVNLQAGGRSWKAVES
VVFQQLQTVAMQHGLVSEDFERQLAYYATTWTSKDILEVLAMMPGNRAQKELIQGKLNEEAERWVRQNPPGPNVLTVDQI
MGVGQTNQQASQANMDQARQICLQWVITALRSVRHMSHRPGNPMLVKQKNTESYEDFIARLLEAIDAEPVTDPIKTYLKV
TLSYTNASTDCQKQMDRTLGTRVQQATVEEKMQACRDVGSEGFKMQLLAQALRPQGKAGHKGVNQKCYNCGKPGHLARQC
RQGIICHHCGKRGHMQKDCRQKKQQGNNRRGPRVVPSAPPML
>Copia-6_LBS_yr#LTR/Ngaro 6011-7003 A Ngaro element inserted in a copia? [Laccaria bicolor]
MISISRGSRQPHREPWTLDRLVHERSIALGLSIDNSSHLTYTSALNSYLSFCKIHNFPIEPTEETVSFFVVFMSTHIKPD
SVNSYLSGICNQLEVYFPNVRKNRNSILVSRTLAGCRRRFGTPTRRKQPLSSHDLGKVLSRIGSSKNYDDRLFLAILFTG
FHGLFRLGELTFPDRVASRDYRKIMSRHTVDLTQSSYSLLLPGHKADRFFEGSTVIIQKTNLTTDPHNIFVSYITSRDAI
HPYKPELWLRQSGIVPTRSWFIKKLRNFFPSHIAGQSMRAGGATSLAEAGVPPHIIQAIGRWSSDTYKIYIRKNPVLLQA
MLFGRPVHQQC
>SIV2_pol#LTR/Lenti gi|27311168|ref|NP_758887.1| pol protein [Simian immunodeficiency virus 2]
FFREYPLGQWQTQELPGDAIDPNGPSNARDGRPSRENAVRLHEERATAESGKQTGKEREGSIRGSLQLPQFSLWNRPTTV
VEIEGQKVEALLDTGADDTVIKDLDLKGNWKPQIIGGIGGSINVKQFFNCKVTIAGKTTHASVLVGPTPVNIVGRNVLKK
LGCTLNFPVSKVETVKVTLKPGTDGPKIKQWPLSKEKILALQEICSQMEKEGQISKIGPENPYNTPVFCIKKKDGTSWRK
LVDFRQLNKVTQDFFEVQLGIPHPGGLKQCEQITVLDIGDAYFSCPLDEDFRKYTAFTIPSVNNQGPGIRYQYNVLPQGW
KGSPAIFQATADKILQPFRERHPDVVIYQYMDDLFVGSDRVAPEHSRMIQELRDHLLFWGLETPDKKFQKEPPFEWMGYI
LHPKKWTVQKVQLPEKEEWTVNDIQKLVGKLNWASQIYSGIKTKELCRLIRGAKPLDEKVEWTREAELEYEENKLIVQEE
VHGVYYQPEKPLMAKVQKLTQGQWSYQIEQEDNKPLKVGKYARTKNAHTNELRVLAGLVQKIAKEALVIWGKLPKFYLPI
EREVWDQWWPEYWQATWIPEWEFVSTPHLIGLWYNLLREPVPGEDVYYVDGAANRNSKEGKAGYVTARNKSRVIALENTT
NQKAELEAIKMALQDSGPKVNIVTDSQYAMGILSAAPDQSDNPIVREIIELMIHKEAVYLAWVPAHKGIGGNEQVDKLVS
RGVRQVLFLEGIDKAQEEHDKYHNNWRALAQDFCIPNIVAKEIVAQCPKCQTKGEPIHGQVDTSPGTWQMDCTHMEGKVI
IAAVHVASRYLEAEVIPTETGKETAHFLLKLAGRWPVKHLHTDNGPNFTSEKVATVCWWAQIEHTTGIPYNPQSQGVIEA
KNHHLKQIIGQVRDQAEKLETAVQMAVLIHNFKRKGGIGEYSPGERIVDIIATDLLTTKLQHNIQKIQNFRVYYREGRDQ
QWKGPAELIWKGEGAVVIKEGTDLKVVPRRKAKIIRDYGKTVDSDPNVEA
>BEL1_AG#LTR/Pao 1204-6519 [Anopheles genus]
MDIIFKSNPKGNCKLCKNPDEWDTQVNCIECDRWLHLKCLKLEGPVKKYVCPKCYTIAEERKGNREALMQTERLLKEKTE
AEKRTREENERCEKEIERLEDILRNEEIHNQSDTTHLQDDLQTLTTNVNKMANLGFAPHKKTVLKLPDFYGNYRTWPRFK
LLFEETTRTEKFSNLENLTRLQIHLKGDALRSVSGLMLNPSNVDAILERLGRLYGNPVSIFNALLKDLMVVKRASLENPS
SIIEFCNALNNMVENMTMLNQTEYLMDQRLLTDLVAKLSPDLKTRWLRDSLNEEGDKIKTLKDFSKWLKPTEDVAITLLA
MEGGQRDRPARLNTHYSASHQISNKGCLICSRPHETISCYKLKNASVNERWKMLKEKNVCTNCCKFSNHAAINCRSRPQC
TVDGCGRRHNTILHEEKFNSMGAASKAHLNFHQNSEQYLFQVLPITVYNENNSIETFALIDPGSSTSLMTESLRQKLNLH
GPRKPLTLSWTNGCNQVEDTSTSVSLKLRGPNGRLLYVKDIRTVKELDLPTQSINANVLKRKFSHLKTVNISSYKNAKPT
ILLGLPHAYYTQAVESKSGAPNEPVAHKTRIGWVVFGKCRDGDAKENQHLFTIQDKKEEEEKSMRDLMKRFFSTEEFGVR
ETKFTPKSKDHERALSVMNDTLKYTNNQYEIGLLWKDPNVSLPSSYAQALRRLESQERKMKGNDEMKTWYKNQITDYVQK
GYARKLTPFELLNRDPKINYIPHFMVINPNKPTPKPRLVFDAAAKNEGISLNSTLLSGPDATTSIFGVLIRFREYPIACS
GDIKEMFHQIRIRKEDQVAQRFLFRDNPRNEPQVYVMNVMTFGATCSPACAQFVKNENALKYKDKYPTAVEAIVKNHYVD
DYLDSFRTINDAIKTINEVCLIHDRAHFFMRNFVSNCQEVIRSIPDDRSSQQELLHISNKDMNFEKILGQYWDKTNDVLR
YKLKHTPCSIISKREMLAYLMKIYDPLGLAANYTTQAKVIIQEIWKTELDWDSPVPERIMEQWQRWKERIKELEHIQIPR
CYSVASNIEVTELHTFVDASEKAFAAVVYLRTLTEKGIDVNIVAAKTRVAPIKPLSIPKLELQAAVLGVRLAETVKEELR
ITTDRDYYWSDSKTVLGWINADPQKYKQFVAVRIGEILDTTNASQWKWVSSESNPADEATKVVTRKSIWLNGPVFLKQRE
IEYRDPKLIITHEEIRPNLMIKTIEKRTFNFIKTEWCSNWLRLKRSLAINLKYIEFLKSKVKRLAFSPIVEKENLDKAEK
LLLQKAQWEIYEDDLVQLSLNGQVSKNSTIKNLNPQVIEGLLRARGRLANICYLSDDVKQPIILPKRHHVTELIIQHYHE
RYMHKKMEAVIAAIRQRFWVIDLRAVVRSVISKCQRCKNERARPIAPMMAPLPESRAAVFKKPFTHTGVDYFGPMTVSIG
RRVEKRWGAIFTCMTTRAIHLEIAKDLSTNSFIMCLKNVQHRRGKICHIYSDNGTNFVGANRQITELVERCATNGIKWHF
NPPAAPHFGGVWERMVREVKSLLPNNDNMPEEVLRSAFIEIEFILNNRPLTHIPLETEDDEPLTPFHFLIGCSGEAEPTP
AGISAAEASRNNWKKAQVITQNYWERWLKEYLPTLAKREKWIERSDPIQPDDIVVFPDEQRVGRWLKGRVVEVYPAKDGQ
VRSAKIKVENGEYKRPVINLSVLEVKGKKIADVPSWGVKRPVNIAYVKKLAEQLKTPPAKRRKHLVKPYNGPVSMHYKPV
SRMETNRQSFS
>BEL-1_DPer#LTR/Pao 1265-6707 via tfasty with MAX, 1 frameshift. [Drosophila persimilis]
MPTGDKKSRKKFKRVSSLSLTHPPSSNGSIATPTSSRPSPTERGPTTSRAHAPRAFEALLLPSVVPRTVPSTMAQSAASS
ARSKFALAASRLTRFDQKLSAPDASTPTRSLSQVHRDQLRSLWAKVDAEFEACVEAITEVDPEGVADVQGMYDDCYAVYA
QCLAELNDQLEPPTVPHTPQLAVQVPTSGGCRLPPCDTEVFSGDYQQWPTFRDLFTAIYIENPRLAPVEKLFHLNKKTSG
EAHDIVAQAPLTNEGFASAWSALRERFQNKRLILKAQLKILFSLPQIRTESAAALKELQRAVHKCLTTLNHSEVSTDSIF
ADGVLVYLISAKLPKTTLELWEQSVTHKSEIPTWHAMDKFLAERYLSLEVTEDGHPGMETQATPGRVYPCQRGQRAIPTL
SVPQESPVARRVHSFGTTVDPKRRACDLCSKENHPIRVCPQFLQMRPDARSSYIKQKMLCLNCFARGHQIRECQSAHNCN
TCGDRHHTLLHRGTPVSSQSVPNSVPLPTPAEAQPSVQNYFASGKRAVLLGTAIINICHLGTNFRARALIDPGSEATFIT
ERLFQIIKLPFRLAQAQVSGLNQTVSAQSKKLCHFSIRSPTKPGLQLDATAYVLPELSGSLPSHPIPQHSLRDLPNLPWA
DPTFYESSQIDVLIGADILPSILLSGSQTNICGSLLGQETIFGWVLTGPVPNTVQGRVASFSTQISTELETPLDKLLTKF
WEVEDIPTKIESESDSYCERNFLRTTSRTPSGKYVVTLPFRDPDHPGSDLGYSRAAALAQFLRNENRLKRNGPLQEQYDT
VIQEYLELEHMTEVPPTHGSSTYYLPHHAVFKPESTTTKVRVVFNASSPSTNGVSLNDLLHAGPVLQSDLTLQILKWRYF
RYVFNADITKMYRQIWVDPKHTPFQRILFRNKEGLIRDYELKTVTFGVNCAPFLAIRVLQQLASDVQSRFPKASRIIRSF
MYVDDVLAGADSTDEARLTIRELQAALSSAGFPLRKWTSNHKAILAGIPSAHRLHTDFLEMEEESTAKTLGIRWKATSDE
FFFVPPELAPESSYTKRAVLSQIARLFDPAGWLAPFIVRSKIFMQEIWLQDLGWDDELPSEMRQRWQSFLRSYSALDQIH
IPRWVGSRPAVKVEHHGFCDASERAYGAAIYVRIEVDRLVEVQLLTAKTRVAPVKTVSLPRLELCGAVLLSEMAAAILPN
MPTASTSCYCWTDSTIVLAWLAKPACHWTTFVANRVTRISQATDIEKWCHVPSEQNPADLASRGVPLQELVENQLWWHGP
TWLQKGRDQWPAPVNNSPVMTLEQRTVKAHFALNPAEDFLERFSNLERALRVRAYILRFTKRCRKLATAQKGHLTSGEIT
EAEKTLILETQRREYPEEYRCLSGKRPTPRSSSILNMNPFLDRHGLIRACGRVAGSEVLRYDERHPIILPYNCQLSRLLA
QFTHRITLHGGNQLMVRLIRSKYWIPKVQRLMKGVVNSCKVCVIHKRRLQTQMMGDLPTERSSFSRPFTHTGVDYAGPFE
IRNYTGRACLITKGYVCVFVCFSTKAIHLEPTSDLTTEKFLAAFARFVARRGCPQRIHSDNGKTFVGAATLLSSDFLDAF
KDSVTDAYSHQRVSWRFIPPGAPHMGGLWEAGVKSFKTLFYKATSTRRYTFEELSTLLAKIEACLNSRPLSPMSDDPTDL
LALTPGHFLIGGPLMSTAEPEIKGNLNSIINRWQHLKALNQQFCQRWKEEYLKELHKRTKWQTPTPNLQVGDMVVIKEDN
LPSNEWRLGRITSVYPGADDRVRVVDILTARGTLKRPIVKVVLLPVEPRSSIQQ
>BEL-1_DBi#LTR/Pao 41-4667 via tfasty with BEL-16_DWil, 5 frameshifts and 1 stopcodon. [Drosophila biarmipes]
MDQLKLLKAARSRAKASITRLLTASQDPRAGSKWELDEIHVSLDRLNNVWKEFESISDQMALFDEEEGYVDPAIDNERYE
DKYLQASTLFRNLIRTCEEAQENGREGNFRQSGNPDEAASMASGVGNENLVRFLEQQQQLNERLAEQQATLLRANSAATV
MHNELPKIHIKLFTGDYKEWPAFKNIYESTIHSKQHLTAIQKFHYLKTYITGEAADLIRHMPITDAAYEAAWTCLIDRYN
RPRHIVNTLLETFVNLPSTARADVTVLRKVTDGATEIVRGLDAAGQTQRDCWVIHFILGKIDAETRRKWIEGSRDLESPS
VDDLLKFLDRRCEEFELSKSESDLDSKVGPQHGKAKRSAHALVSMEATSCVKCNSKEHKIYACSQFAELSVEQRRTFVKA
KSMCFNCLKPGHVSRKCESKFTCKFCHNRHHSLLHAEVIGSQAAVSTTHPRDERHIPSAPEDATVTISHIARAQVAATAE
ALCNGSTTATQPQGLRKSALPTALVFVKNAKGSHTTCRVLLDSGSELSYISERCVQALGLARSPSRILVSGISSIKAETT
RGCSTLDLQSRISDHTMKVRAHILSKITSTLARHDIGSSTLKAFAGFELADSDYQSLAPVDILLGSDYVWTVFTGQKMFD
NEGNIIAISTIFGWVITSIVTTGCSSTTTMHTAIDIDASLRRFWELEDSPFLAVRVLDQLAHDHQHEFPTSAKIQKEQFH
VDDVLTGAHTEEELIHNQNELIQLMKCAVWNLENGFQFITYRRQSSRGHRRTRKRVQFYSKGSGHSLGSRRGYVIHKVCL
TTNPDNTKRQVLSDVARIFDPLGILSPVVVQFKILFQELWLLDLGWDTELPPKIADWWNKCRNDLHILRDLRLPRFVQNN
KDHIELHGFSDASIKAYSAVIYSRVVRADGAISQGCATTQGHxSHAWCDSTIVLAWLSHPPSKLKTFVANRTSEILEALP
RNCWHHVSTKENPADCATRGMFASDLLHFDLWWMGPSWLQDPEMLAVKLSCKKFCSSLSENHVKEEVKTTALTTQEACSL
SPIEALAQRISSWTKLVRVVAYALRFIQKTKAIKSLTLTNGKMLTFEEIQAARILCLKEAQRCFMEDRKLLTENKPLHSR
SQLVKLSPIICKDGLLRVGGRLDNSQLPAEAKHPILLPKSNRITKMILEYEHISNLHPGVSALFVIARQRYWIFGARNLI
RNLVHNCIKCFRQRKLTEHQFMADLPGIRITEALPFQHSGCDYAGPFILKERGNPETKGYICLFVCLVTSAIHLELATDL
STDTFLACLRRFMSLRGKCSQIFSDNGTNFVGAKRTLDEMQQLLSSQEHQRNVTQSLANDGIKWSFIPPHSPHWGGKWES
SVRSVKLHLRRVVGKTVLTFEQMQTLIAQISAVVNSRPLCYTPDTDLTYLSPAHFLIGRPFTTVPEGVPDSFTINRLDYW
QHLQAMYQGFWKRWRQEYLTSLQQRQKWNNKERNIAVDNVVLVKDSNLPPAAWILARVLEAHPGPDGLVRAVKLKTSTGE
MTRPITKLAVLPSSETLFQGGP
>BEL-1_DWil_p2#LTR/Pao 7422-8426  [Drosophila willistoni]
MSSSPCMLFVPAHRLIHSPLRNFFRYSSFSSPLHSDMAPTRLPHHRSKRAAPQGTNVYRCRVCRGVHALRQCQRFLNLRG
EKRLRAVLINKYCPNCLAHEHSSDACRTRHGCRRCGQRHHTLLHMADQPPRQRASARRRSQSPPSGRAAPPLQPCSRSSS
DRSASPEGAPEISLSSLLHARTTTVLPTAVLRLGNGSKSFETRVLLDACAAESRINRSFARSLGLAVTKVGVDQACTAVL
ESRSDETFRRNVIFRVEEDLLIRTPIREVAAPVREKFATLILADPYFYRPASVSVVLGADLYPEVIPPGCVPGHSGTPAA
QSTVFGWVVSGSCGI
>BEL-3_Deu#LTR/Pao 530-5612 via tfasty with BEL-3_DYa, 1 frameshift and 1 stopcodon. [Drosophila eugracilis]
METTILETLKRQRSNIKHNITRIRGMVDVKEEEEQKSPAELQCRLGILESYFKQALSVQSEIETMDSTDSGRADLEDSYI
TTKLAIQQLLGEDLHNTVFDHISAPSYSAPSRLPRLALPSFDGNHKDYKNFISSFLPLVNREQISNIDKFNHLRNCLKGP
ALEAVAAFPVTGENYAKALERLKDRYDKPALIFVETIASIFKLPPAAAASAQQLRSLIDNASALYSALSSLGSDAQISEA
MLIYVVMEKCDQQTKTKWNESLDYLTLPSWSQCTQILERHCQFLLSDEQSHGSERPRPTRPPARSHNSSFSLTNAPCVYC
LAPSHKLLGCDKFKDLNPTARFDVVKTHLLCLNCLCRGHQLSSCPSRNRCRTCNKAHHTLLHNNHSLDSSRSHQPYPTAP
PLEAATHLHSHSGQKSQVLLATAMVLVKDAFGTYRPGRALLDSCSQVNFVTEDFAQRLRLRRERHAVQIRSIGHSQTDVK
YCTTASVKSRISSFVLSADLCIIPQISYQPDLAIDVSTWKLPENTPLADERFYQSRHVDLLLGTEAFFDALTVGKIRLGP
QGPLLQKTQFGWVVTGRLQQTAPIEVSTCMALNASSIDVNLKRLWELEAVDSPPLQKPEHAICEEQYEKTTCLDSTGRIV
VKLPFKADPTRLGDSFDIARRRFLSMERRLSKSPALRQQYCDFMEEYEKLGHMSPVIHPKLHEPHYYIPHHCVLKPSSES
TKLRVVFDASCRTSNQLSLNDLLCVGPTLQEDLYLQLLKFRLHRYAITADVTKMYRQVNLDIIDRKYQYILWRAFPEDTL
RTYQLNTVTYGTAAAPFLATRSLNHLADVHQADCPIGAAIIKSSFYVDDLLTGADDLETLRIIKDxVTEILRRGYFPLTK
WHSNYVGFMEDHASKKLSSCGEGLASALGVNWNQHKDTLFFKFIPRNHATRITKRSILSTASALFDPLGLLSPLVVVAKI
LLQELWLAGLQWDESVPENIHTAWSKCLESFQTVSILSIPRYCLQHKMRSLQLHGFCDASIRAYGCCVSETSTGDVAVQL
LTGKSRVAPVKKKSLPKLELCGAHLLGQLYAKLKPLLADRKFSVYFWTDSQIVLHWLKQHSVTLSAFVGNRISEIQEWTA
DGQWKFVPGESNPADIVSRGAATTELAASLWFTGPQFLTQPSSQWPTTPQIIDIDPTIVKAEQRRSTFTTAVISNHVLQQ
LTHISSYTRCIRTIAYVFRFANLSRGVKIVNPSLTSEELRRALFSIVYNIQQQSFLEDFHSLQKAKPLTSHLKYLTPFLD
SSSGHALIRVGGRLQNADIPESERHPLLLPSKSHFAWIYVRHLHLRNCHAGPKALVALIRLEYWIINARDLARRVVRSCI
ACVRFRPKLENQLMGSLPLERVLPQQPFQRCGVDFCGPFNTYLRIRGKGPTKSYLAVFICLASKAVHIEVVSDLSTKAFL
AALKRMIARRSIPTDIFCDNGTNFVGAANHLQELRAFLQDKATQEVISSYLSTDFITFHFIPPRAAHFGGLWEAAVKSAK
SLLYRTLMNSRFTFEELCTITTEVEAIPNSRPLSPLSPDPNDFGALTPGHFLVGKSLRALPERTVSSTHASSLERFDAVT
ASKQQFWRRWSLEYLQELRSRTKWTTPSANIRANTMVIIHDDNLPPQRWKIGRVETVVPGKDGLVRVAHIRTSTGVCCRP
VHKLAVLPTDSQSC
>BEL-3_Adi#LTR/Pao 84-6231 via tfasty with BEL-38_DR, 1 frameshift and 1 stopcodon. [Acropora digitifera]
MENEGNVMASMSAIKEPLTEENVGDTLNESDNIKETDPTISARIRIPTEKGKDFKVQLLKQSRTAALSAISRKRTEIIQM
MSDQNNIDLVRNELTTFDTLCQRYQEEHNNHYQALETAEEKDQSSLTFSLKDSESFEFWKQVVQWLTVGEQRINDQLDQI
LEQRSRASHSSHSSRSSRRSHASKSSRLSAAEERAKVAELLAERSMLSKKFELQQAEEQLNLELKIAKAQARERVFTELE
KEENDHSPKRDDAFGEFSSEMKRANHPGLETSPSGIAHGKANPDTSHLHQASPEFYYRAVPYEVKTEVKEEGNSSQRSDE
DILKEIFKVQYEQLQTMISSQKQLATAVTLPQPEVPKFSCDPTKYKTYIAFDARIQARVANDADRHYYLDQHHTGEPKDL
IGGCLHLEPDVGYKERRLLDKEYGDPYKVSNAFIQRLSNWPVIKYDDGPSLKHFSLFLTKCNNAMKAITHMTVLNHPPNM
QSVVQKIPNNLQTKWRETVVKYRIKDGRIAGFEDLSKFVEFATESTNDPIYTKDALANTRAKPAPPSGVADHYKKINTPK
PKSTSFATNVDASTQSPSLHGTGSSRRDAVVPYATEAKGVRCLLCHESHDIEDCEGFKRKSVGERKTFLIERSLCFGCYG
QNHFSRRCRRKRVCKKCKGPHPTLLHEEGFARRKEVRSGTEERNPNEETVRVNTVSTNVPQRKSENKGILLQTILPVIVT
QKGTGKSVKTNTFYDNGSSGCFLTENLRNRLEATSTKTQLQLGTMHGQSVVDSAVVEELIVSDPNGTNPIELPRAYTTNE
IPVQHEQIPTREIVGRIGHLKEIAGEIPLYDRELDIGLLIGNNCPTALVPLKVVPNEGDGPFAVRLHHGWTVSGPLHVVT
TPTTNKITANRITVREIENVKEIITPESLLQLFELDFNDMASSNFPEDLSYSQEDRRFLTKVSDGIKHTGGHYEIPLPFR
QTEVQLPNNRQQAFKRALWQRKKMLQNQQYRSDYVAFITDMIDKGYAEKVPHESLKSIPDKIWYIPHHGVYHPKKPKKIR
VVFDCSARYGGTSLNDRLLQGPDMTNSLVGVLTRFRQEPVAFMADIEAMFYQVLVPADQRDFLRFLWWPDGDLGAELEEY
RMRVHPFGAVSSPSCSNYALHTTANEAEREYGSEVAGVLRRNFYVDDCLRSVSTEGKAIDQIACLRQACRKGGFRLTKFI
CNRRSVLESIPVEERSKDVKTLDLSYDELPIERALGVQWCVESDTFKFRITVKDKPVTRRGILSTVSSIYHPLGFAAPFT
LAAKKLLQDLCREEKIGWGGDLPHTYHRRWEEWLKELPLLERLSVPRCVKPVDFGEVKSRQIHIFSDASNVGYGSVAYQR
LCDSEGRTHCSFLMGKARLAPIKAVTVPRLELTAATVSVRLGEIIKKELDDKAETIQYHTDSVTVLRYIANDQKRFHVYV
ANRVQLIRNLSDPDQWRYINTKQNPADDASRGLDASTLTEQQRWVKGPKFLWQPEKEWPAQPTRLGEIPKDDVEVKNQVN
LCATAIVTPTAVSTVSKLLHHFSSWYRLKKAVAVFMRVKVILKERSFRSANGKSVKLNEDHSRLTVKELEDAELAIIRFT
QFLSFQHELGTLExDRSGQLEDQSRSNHNKVAVGKTSPIYRLDPFVDNGLLLVGGRLHNAEIPEECKHPIILPRKSHVTT
LIIRNAHERLGHAGRSHVLTLLHEKYWIVGANSAVRQRIAACVICRQNKASPQSQKMADLPSVRLTPAPPFTYVGVDFFG
PYITKEGRKERKRYGALFTCLVSRAIHIEVSNSLETDSFLNTLRHFIARRGPVREIRSDNGTNFIGAVRELREAIEEMDH
DKITEKLRKQQIDWRFNPPGASHMGGVWERQIRTVRRILSTLLREHGNRLDDESLHTLFCEVESIVNSRPITAISSDFRD
PLPVSPSQILTMKTKVVLPPPGKFQRNDVYMRRRWRRVQHLCNQFWSRWKKEYLSTLQQRPKWCQEKRNMKIDDVVLIKD
ENTPRNDWSMGVIVNVEPDSKGPVRSAVVRTKTTELRRPVHKLVLLLAV
>BEL-1_DAn#LTR/Pao 65-5320 via tfasty with BEL-3_DWil, 2 stopcodons. [Drosophila ananassae]
MEQLKRLKGVRGRLKSSLTKLLHTAENSSASIGVDAMEVLLVRLDKVWNDFELAGDDLSVLDDVEGWVYPADDYDEYEAK
YIKARALLFSLKRSQEPTTPTRHAEGDSIANNDAISRLVQQQQEFFERLGATSTPTQADAAAPVRETELPKIHIKPFGGI
YKEWPAFKALYISTVHSKQHLGKIQKYHYLKSFLVDEAASLVRHLPISETAYDNAWERLNERYDRPRQIIHNLLDTFMEL
PSTNNGEVSILRSISDGANEVIHALDSIGHMDRDCWVIHLLLNKIDPESRRKWVDASRASNSPKVEEFFKFLDARCEEFE
LCQSDPVPRQGGNNKKTSRAMVTAALTKCVNCNADGHQLSKCPQFISLSIDQRRSFVKHKSLCFNCLKPGHRSSNCSSKY
NCQQCGSRHHTLIHTHAMQTNEGQITSTSSSDHKDPDTTSVTASHMSQALLTPTLLSHGQVGRTCTLPTALVHIRNSQGT
YTNCRVLLDTGSELSYVSERCIKALGLSRVPRRILISGISSIKADTTRGFSTLTIKSxVSDHSLQVKAHILGKITSTLAR
ENIDASALEIFNGIPLADTEFNSASPIDVLLGTDSVWAILTGNRKLGAQGNIIAISTIFGLVITSIAYQNPSITTSFLST
VDIHATLQRFWEIEDSQITTHHDPENVKVEEHFQTTHSRDSKGRYTVELPFKDADPQFTDTLQGATQRFASVERRLHRDA
DLHSRYVKFMQEYISLGHMRQMNPDEILTNDGRVFYMPHHPVLGKKLRVVFDGSFQDPSGQSLNDTLNVGPSIQRNLFDV
CVRFRLHKYVFSADIIKMFRQIWINKHHRNxQRIVWREHPSAPLLHYQLCTVTYGTACAPFLAVRVLEQLARDYQHLYPT
AARILLEDFYVDDVLTGADTEEKLLQYKQELIQLMSCAQLELGKWISNSNRVVDPETTITNNTSYSPLETTNKVLGIHWQ
PHTDTLAYKVSLPSEGKITKRQVLSDVSRIFDPLGLLAPVVIQFKILFQELWVLNLDWDSPLPLSLEDWYLKCKNDINTL
NELEVPRYIGNSTDTIELHAFSDASIKAYAAAVYSRVTLPDGNIKVTLIAAKTRVAPLKTQSLPRLELCGALLLSRLINS
VKAALKNYNVTVYAWCDSTIVLAWLSHIPAKLKTFVANRTAEILSIIPRDHWQHVKSDDNPADCASRGMLAADLVNHNLW
WKGPHWLYSTEAEWVKTPSTPHSSFISDEQVQAEVKGSAFTTMRTYNTETSLLGQLIDRVSSWPKQLRILAYVLKFIRRN
RRKSNTATLTFEEIHDARILYLRHAQDEFQADYKRLLNQQDLGNKSKLRTLSPQIDKHGLLRVGGRLGNSELPADVQHPI
IMPKSHRITKLILEHEHRIHLHPGVSALFVIARQRYWVFGARNLIRKITHDCLKCFRQRQHTSHQFMSDLPSVRVRQAFP
FANTGCDYAKPITLKVHKGRNPRKEKGYICLFVCLATSALHLELATDLTTDRFLAALRRFISRRGKCSQMYSDNGRNFVG
AKRVLNEMQTLLKSDEHNNTVLKALADKGINWNFIPPHAPHWGGKWESAVRSVKLHLHRVIGKNVLTFEKMHTLLAQIEA
VVNSRPLFSTSDTEVNYLSPAHFLIGRPNTTVPEGDLSNVPINRLDYWQQTQAMLQGFWKQWRMEYLTSLQHRPKWMNKS
VNMAKDDIVLLKDSHTPPAAWPLGRVIETYPGKDGMVRAVRLRTPTGETTRPIVKLALLPNSETVFQGRPGC
>BEL2_AG#LTR/Pao 239-5491 [Anopheles genus]
MASRRLYFVENEQGACRLCTKPDDIDDMVRCDECDRWFHASCVKVIRLPDEDEEFVCVKCXNDRAEYMXISQSTNQDTTL
KALIEALKMSGLTSSTHIKRMTLNSLPNFNGTSKDWPKFKRAFEETTEEGSFSNVENLNRLQHALKGEAERCVRRLFLEP
DNVPIIMKKLEEQFGRPEQVYQDLLGEVLKVRVENQMKIPDLSDALEDMIINLKAIKKEGYLQDHXLVDELIFKFSTDKQ
LKWIEFKSSLEKXNKIPTLEHFSEWLYPIAENIRKLPKRNERFRQPLNFHRPQFSPNQQRPAEINNNRPMNRPPQPHNSH
PMNTQTRPFNTRVRNVQRFFQPCPCCQGSHALYRCERFKNIPVHERLEIVVNSQQCQACLTSNNHSQNNCNAARECGIQG
CRETHHQLLHTGDTVRMNYHQTIQNVYYQIVPVVLRNNNHTLETYAFLDAGSSLTLIEENTANKLHLNGVTDPLTLTWTQ
NLSVQENCSRRVSCMIKGVNEKKEHLLNGIRTVKNLQLPSQTLSGSILAARYPHLKGIKLSDYQKARPTVLIGLNHSHLL
MPLGRKMGRPEEPMAIKTKLGWLIFGIDKICLSETNHLMIHKSEDLMTEMMRRYFSTEEFGVKPVKTVKSQALERAETII
EKTLKKTDGRYEVGLLWRDDDVILPNSYSNALRRLATQEKQLAKDPGLKNWLCKTFEEYQQKGYIRKLTKEELKRHSQKI
FYIPHFVVVNKNKPIPKPRLVFDAAAKVNGVSLNSLLLTGPDEMASLFGVLLRFREGPICVCGDIKEMFHQVKIRKEDQD
AQRILWRDGDSTRTPDTYVMQVMTFGATCSPACAQVVKNRNAEANSEMYPLALEPIRNQHYVDDYLDSFFSMEKAIKTVT
EVIQVHENGGFHIRNFISNKRELMEAIPQERHQVKAIVDIKEKDSCVEKILGVQWNTQLDCFGYKVDVGRINLEKKPTKR
EALSFVMSAYDPLGLISHITIQGRILMQSINAATNDWDTQIPDSLHGKWIEWLKMITSVKDLAIPRPIVASIMNPVEIHT
FVDASQEAFAAAVYARSNFNGCFVVRLVAAKSRVAPTKALSIPKLELQAAVLGARLTASVIKELRLKISRTIFWSDSKTV
LAWINSEHRKYEVFVSHRVSEILDTTSANQWRWVSTKDNPADIATKITSNSWTWYNGPQFLQEHERDWPGVHEVAVEQHL
VTVHKETIAPEYYFSSWDKLLKHQTVMKKYVDFLKNRSNFSRTISYRDMETAKLSLLRKAQWEGFPEEMEALEKRKEISN
KSSIRTLVPFLDEKGILRSRGRLENASCLPYSARLPIILPQRSRVVKLLVRDYHEKYMHQADNVVIGVLRQNYWIINLRT
VLKNVKSCCQRCILNTAAPKAPLMAPLPTYRTHPYNPPFLHTGVDYFGPLDVTVKRSTEKRWGAIFTCMSTRAVHLELAE
KLDTDSFMVCLNNFLHRRGKITHLYSDNGTNFVGAEKELKKIVEDIDLRMGREAALKYKIEWKFNPPAAPHFGGSWERLI
QNIKKALRHMVTEWKTRHPTPETLRATLIQIESILNSRPLTHLPLTSEEEEVLTPFHFLIGRGVDSLPAPTETSQVDRQQ
FRLAQHNAKTFWDRWKKEYLPTLIKRNKWTCKVEPIKVNDIVIITNDNAPPGQWLKGRXVETATAPDGQVRSVSVKTVQG
VIKRPAVKVAVIDVKQKEHLLFVKKPPHSPTKRKVLSEENLQKVPPKKRMIAPCNWAPKLVQQLKKEDDV
>BEL1_MH_pc1#LTR/Pao 5868-8853 This protein shows similarity to Polinton-1_CB_pc1, an otherwise unclassified protein in a Maverick transposon. Both TEs are in nematode host genomes. [Meloidogyne hapla]
MKKDWWKLKNEKTTSYEAGFLFIDQILDARKPGQIISIIESRSCPVGNLDKDWRPRILKPALALWKAACEWAEEAFSTKP
WLPVSLRGRENPMKEEGHGLFLKIAEQTERALSFMRLNEYYPRATPILEEVIIIGDNNAKLLSEYFQRSYCAAPIPANEL
KYLFNDVIPLTPAPYFTAILCIGSEVIDEGGHPEALKTQLEPLFKKLETFSCTIYILPPPFKPKEVDYWQRIVDNLKKER
KEKRGLKYIEIETGGFEALKKELINEEGVITDKGVKEVVQKLKEVDTRLAKQKDVPLIKEESDSEMNEERVENNQRYRRT
IYVRRPENPQGGRRPNWRGRGQIRDMSPIRDRRPNIVNRLSFVSMNLALIVGMALLIILPVSETGEEPMICPHGITSKIY
RIGHPTAHCDELLVPERQMIKDVRLSIYRPNEETQEILGFHCLKVMEKMTYYLNWIGYKIISPIQRMKIGVTREECLKMI
HLEKCFTGTEQSMDGPDSSKRTSNLLHPEFSYFSGGKEATVINCFLTKIHIYFSPNQEVIESPLLELEHCRLKDKACLLA
DQSMLIWNSPTDEQQCNYVKMQKFEGSMYDNWFMSNDQTFSLSITSPKIFTDCGKEMVKTDQLYAITMLEYQKHFVMAKS
QLRRSLLATKFSGNKEKIENNLDGTVQVSQFSAGETAQRLTNEIQLKKAYNHLAKVMCQQQSELNFLTSLDATMIARQRL
ADPYVEAKWIGEDKNQVWIEVWSCYPINWLNITIRPSENECSKNIPVNVTIEEGKSEAMFLDPLKLILRATSEIGSCAKY
RKQKIKIREAIYTVDQKTGKLNKIEEERIIDTPKGLIWTEKPPKLDAKTFRGHILTKIKDPKKVMLQAFQEFSLSREGEK
PHIHGENEFGAQISSSSNHSMWPLLDSWEMIKQKMILTVCLIWTLVWTLKLTYYIYLLWLLYNSGQLLEKWKNWGKPKND
VVQKTRKNELLIKVEPQQVLEEEELVDKQFSRGGS
>BEL2_Dya#LTR/Pao 1563-5997 via tfasty with MAX, 2 frameshifts. [Drosophila yakuba]
MMSEAGQKRDPSPRYAEAGPAGNLRSKTRTSLDDAVLDLITTSDRLSKFESQICAASSSSAEPNAFTLKIRLDQIQSLWD
KVEREYEAVSRLALHEGSGESVQLQSKYENCYLVYERCASQLNEHIARLSAPSSQGSSNPSVETFSKGCRLPPCDTEIFT
GDCLRWPTFRDLFTAIYIDNSRLTPVEKLFHLNAKTSGEAHAIVSKSPLTNSGFQSAWSAFQERFENKRLLVNSQLKVLF
ISISTESGTALKDLQSTIQGCLIAMEHSNISTENWDCILIFFCSSKLPTVTLSLWEQSSEIPTWDEINSFLEERYRPLEA
IEEVRLHTSNSQHTKEPRNPQPKRVKSVKSQVGPRVRSCDLCSRESHQVRQCPRFLQIKQKRLCLNCFAKGHNLRECTSR
HNCFTCKGRHNTLLHKESPATSTSAAQVHNPDQPIANTSVHFASNRQGILLGTAIVQVCHQGENFPARALIDSGSEGTFI
SEKLATQIKLPCQAVRTTITGLNQTSTGVSQRMCHFQMGTAAKPMLKIDTTALVLPNLAGNLPTSSIDRSILGRLPNIPL
ADPLFFQPSQLDLLIGEDILPSVLLSGLKPNLCGSLLGQDTIFGWILTGPVSTATSRVSSFTTKISIESEPTMETILTKF
WEVEDLPCKVVKESDNLCEENFARTTIRSRDGKYVVSLPFKDAEHINLGHSRSFALAQFLRNETRLKRDPILKDTYDSVI
KEYIDLGHMKPVPPSTDTVNFYLPHHAVFKPESTTTKVRVVFNASSPSSNGNSLNDILHPGPVLQSDLTLQILKWRTFQF
VFNADITNMYRQILLNPAHTAFQRILFRDDRGDIRDYELKTVTFGVNCAPFLALRTLRQLSEDVHALYPRSSRIISDYMY
VDDVLAGAHTKVEATLAIQELRTALSSAGFPLRKWTANERTLLKALPSDQLLSGDFLDIEEVSTTKTLGIRWNAKADEFN
FVPTELVVNANYSKRNVLSQIAKLFDPAGWLSPFVVQAKILMQDIWLAGIGWDEFLPAELRQRWHDFLRSHSSLHKVRVP
RWVQFRPGAQVQIHGFCDAFQKAYGAVIYVRIQYDGGISLSLLTSKTKVAPVKTVSLPRLELCGADLLADLWAAILPHIP
FGRIETFFWTDSTIVLAWLNKPPCQWTTFVANRVTKIALNTDASQWSHVRSEHNPADLASRGVPAEELASSDLWWHGPSW
LIQPQVSWPTSHEAVSDLELERRSVRCHLACPGWDLLVRFSNFNRMLRVMAFVQRFINRCRRIPTPSSTDLSSKELAHIQ
LMLIRQTQRADYPEEYNILQSKGQLPSSSCILNLNPFLDADGIMRSCGRLTASDSLSYEERHPILLAYHSKLAELLVTFT
HPISIHGGNQLMVRLIRTRYWIPKLRNLIKRVTTTCKVCVIHRKKVQSQLMGKLPQSRATYSRPFTHTGLDFAGPFDVKS
YSGRACRITKGYVCVFVCFNTKAIHLEATSDLTTEKLGG
>BEL19_AG#LTR/Pao 2192-7391 via tfasty with BEL1_AG, 2 frameshifts and 2 stopcodons. [Anopheles genus]
MATSKARAIKEAEVNLVEVIVGLKQELAETKEKWEKESKELKKVIESRAKEDEASILLKEQRQAFDSMMIEQRQIFDEWK
KQTENPQVTTTPINSTSNLESIVHSLADALKTRTNTAILDLPEFDGDYKMWPRFKAIFDKTNQEGKLSTTEQLARLSKSL
KGNAAQSVSRLMIDPANVSKIIDRLEEEYGNAKIVYKALLADLMQNENPSLSKPKTFLSFIRSLDDLVTNMTVLKKEEYL
TDPRLLDDLVDKLPEDLKREWLITLIREKEEGGNSRIKTLNDFLKWLKPTEKLAILSNVNEGREEAICDKNLSSPIEPNP
NRNTRTCCHVCQGDHRIVDxRRFRGMRLNERWDAVRRFGLCTNCCNNRNHNANNCRLPPQCREANCHMKHHPLLHYTNKS
QNNLNTLNHHSTTEGIFYQIIPVSVIHEDKEIDTFAFIDTGSSASLLLTDIKESLGVQGIRKPLALTWTNGEMQEEATSE
LVNLQIRGMSGLIQPLKGLRTIREMNLPSQTLNANSLKTRYKHFDGIDLPNYIDGAPTILLGLPHAHLICGSENRVGGPD
EPIAIKTSLGWSVLGKGSKRENKGSLFVLNEKCDKEEKGMEEIMKEFFTTEGFGVQPSPNIITPKHEERALNLMKNTLRP
LETGYEIGLLWKEDDINLPESYTQALRRLQGFERRLEKDVNLKNWYYNEISLYCQKGYAKEVNTEIQIHNRNLNYIPHFA
VVNLNKLNPKPRLVFDAAARNMGISLNSQLLTGPDAVPPLIGILLRFREGSIGVSGDIQEMFRRIRIRADDRCAQRFLYR
ESPNYSPKIMEMRVMIFGASCSPACAQYVKNYNAGLFRQRYPEAVKAIENNHYVDDYLDSFTSIETATQRVNEVILIHNQ
ADFFIRNFISNSSQLTNQIPCERISTQPVLKISEGTSNFDKILGQYWEKEKDVFKFILNDLTIPGHSVSKREMLAKTMKI
YDPMGLLTNYTIEPKILIQEVWKLKMDWDQNIPPDLNRKWQDWLHRLKELETWELQRCYSQAGEPITRELHTFVDASEQA
FAAVTYIRTVHKEGVDMRLVAGKSRVAPLKILTIPRLELQAAVMGARLADTIRSELRLNIDNMHFWSDSRTVLSWICSEP
RRYKQFVAFRVSEILCKTHASEWHWIASKDNPADEATKRIRGDSIWISGPLFLRQRNFTTTNYDSTTLVDIRPMFLIHST
DLIDFTVINSHWTRSWVKLKRALAIGLLYMEWLKSKAQKYKISLEITKKQLDRAEKLLIQKAQMETFNEDIMLLKIGKEI
SMKSPIRNLNPVLDTDGLLRMKGRLTGLSFLEENAKNLIILPKKHEITHVIVRHYHERLYHKKFETALAALRQRFWVIDS
RAVLKRVRATCQSCKNNLAKPQLPQMAVLPACRAAVFCKPFTHTGVDYFGPLTVTIGRRSEKRWGALFTCLSTRAVHLEL
ATDLSSASFITCLRKMQHRRGKITHMYSDNGTNFIGAEREMKRLRERCANDGIEWHFNPPAAPHFGGAWERMVGEVKSLL
PLKQESYREEALRAILVEIEFIINSRPLTHIPLEHEDDEPLTPNHFLLGSSGEAVPTLREATFAEATRSSWKRVQLVAQH
YWTRWIREYLPQLNKREKWLKKVSPIEVGDIVVFPNEQINGKWQKGRVSKVYKANDGQVRSVTITSGLSTVNRPVSKVAK
LDVLPKSIIAEAQQKVQxSIPKKKTNKKKTSNNYNYNTKIKKKKQLVATIVIRT
>BEL3_AG_204-5453#LTR/Pao [Anopheles genus]
MQEESAVIADFTCAVCDKADSVDSLLQCDFCDKWYHYECAHVDKTVETRAWWCAECEVKTKLASGKKDDEIARLKREMEA
LKATTEKALALIREKDAEVARLSKSSERTSFSPGESLPCSTAKRISVNEEGDLSQSQIAARQAVRYELPSFNGNPEEWPI
FLSTFRRSSRTFGFTEDENILRLQGALRGKALRTVQGRLRHADNLEEILSALEKSYGRPDVLVNTLLEQIRESPPIKSER
LDSFIEYGDLVAEICSTIKASGTSDRLYDAALLQELVDRMPAYLRWSWGMHSQELKSVTMSEFGAWIQKATDGAMAVTPP
QLKKKTTTRQVHAQHVETHQPQPRRHRECALCNSDTCGTIAECRVFNRLSVADRWDKVRTLKLCKRCLGKHYGPCSKRDD
CGVQGCVAKHHRKLHRVTSEERVEINHHGTRSDGTLLRYVPVKLHGESGPICTHALLDEGSTVTLMEQELAGQLGVSGVL
DPLCLQYSAGERRDERDSERVAVQVSSAEENASAFSMADVRTVSRLSLPIQSVDVNELKRKYKHLEAIPAASYEAVSPRL
LIGIDHYRLTRPLKTIEGQPGQPTATKTRLGWLIFGKCTDNANDTSIVQPESSYHVCDCQGETSRADRMMAAYFEVEGYG
PAKEPLLSKEDQRAMSILQNNTKHVDGRYTTGLLWRSDNVFMPENRQMALSRMECLERKMSRDTSLAEKINAILEDYLEK
GYARPIRADELKTFYPRKWYLPVFPVTNPHKPNKVRLVWDAAAEVRGISLNKKLLTGPDLLTPLQAVLFRFREYRVAVAA
DIREMYHQVRICDDDVHSQRFLWRWGNTNAEPQEFVMLRMTFGAACSPSTAQFVKNENAEKYRSLYPRAVRCIHEEHYVD
DMLTSVETEPEAIELAYQVSLIHNNAGFSLHNWLSNSIRVVTAVKGTESTLKEMDFEPCLKPEKVLGMWWDTTTDSFGFK
LSRVRHLELARKDKPPSKRQMLRTLMSIYDPLGLIAGVLFYLKVLLQEVWRLHLGWDDEVPEEIQHKWDAWMERLPELES
FIIPRCYRQLASLTESSLQLHVFVDAGADGYAAVAYFRFECHGRIEVSLVGSKAKVAPLKYLSVPRLELQAAVMGCRIAS
SITSAHRETISGSYFWTDSTDVIDWINADHRKYSIFVAHRVAEVLDTTNVDDWRWLPTKLNVADEATKWTNLQHHLASER
WFSGPEFLQLPEAEWNIPRRVPSETSEEVRKKDRLKLVGIHIARPIFIDYERFSRWTRLVRTMAYVCRYVNIITKTKSPS
TGPLNRDEIQRAETVILRDVQRNAFTDEYAILWKARENSTTPSWKSPIPRSSLLFKRSPYMDEDGLLRLSGRIDRCRYVD
PGRKRPILLPRRHRVSELIVDDVHRRYKHGSQETVVNEVRQRFDIPALRSVCRHVRLQCRTCTLLYAKPASPEMCELPAA
RLAAFSRPFSYTGIDYFGPMVIVNGRKTEKRWGVLFTCLTVRAVHIELVQSLSTSDCLMAVRSFMARRGTPIEIVSDRGT
NFVGADRELKEAAERVDSAILNEFGSPDPVWKFNPPAAPHFGGSWERMIQSVKRMLSRTLTERHPTEAVLSAALIEVENM
LNSRPLTHVPVDGEDEEPLTPNHFLLGSSAGMKPLVKPDDSPAGLKQNWRAVQAKMNELWKKWIKTYLPTLVRRTKWFES
CKPIETGDVVLIVDENSPRNCWPRGRVERVVPSKDGVIRRVVIKTAKGTMLERPVVKLVSLNVAPRVIV
>GB:S31261 TyA protein (Ty1_Copia-element) [Saccharomyces cerevisiae]
MATPVRGETRNVIDDNISARIQSKVKTNDTVRQTPSSLRKVSIKDEQVRQYQRNLNRFKTILNGLKAEEEKLSEADDIQM
LAEKLLKLGETIDKVENRIVDLVEKIQLLETNENNNILHEHIDATGTYYLFDTLTSTNKRFYPKDCVFDYRTNNVENIPI
LLNNFKKFIKKYQFDDVFENDIIEIDPRENEILCKIIKEGLGESLDIMNTNTTDIFRIIDGLKKQNIEVCMVEMSELEPG
EKVLVDTTCRNSALLMNKLQKLVLMEKWIFSKCCQDCPNLKDYLQEAIMGTLHESLRNSVKQRLYNIPHDVGIDHEEFLI
NTVIETVIDLSPIADDQIENSCMYCKSVFHCSINCKKKPNRELRPDSTNFSKTYYLQGAQRQQPLKSSAKRTKVLEQDTK
KVEQSVQQQKTGNY
>GB:CAA28054 ORF (Ty1_Copia-element) [Drosophila melanogaster]
MDKAKRNIKPFDGEKYAIWKFRIRALLAEQDVLKVVDGLMPKEVDDSWKKAERCAKSTIIEYLSDSFLNFATSDITARQI
LENLDAVYQRKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIE
TLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGH
IKKDCFHYKRILNNKNKENEKQVQTATSQGIAFMVKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAV
AKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNVPVI
NFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRP
LFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEM
RQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMW
HNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVF
LKDSKESENKNFPNDSTKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESN
KYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVV
LNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVA
RGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYG
LKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEI
KHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLT
TAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLIC
WNTKRQNSVAASSTEAEYMALFEACREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFARE
QVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQDDQSNAE
>GB:CAA37925 orf 3 (Ty1_Copia-element) [Arabidopsis thaliana]
ILRYMRGSQDLNLVFTKEKEFRITRYCDSDYAADLDRRRSVSGYVFIVGGNTVSWKANLQSVTALSTTEAEFMALTEVAK
EALWIKGLMKDLGLEQDKVTLWCDSQSAICLSKNSTHHERTKHIDVRYNFIRDVVEAGDVDVLRYTLQEILRML
>GB:BAA76303 Gag-element protein (LINE-like) [Bombyx mori]
MDSTIDLFAEFLRLRYPTLSVEFLEFKANHVANSEAVSVAPAAPVSPILASKAPASIAAVSVPALHSSAAHVASTRSSAA
SVAPAPSSAPERLSMASVATVNPAPSKTPACGSPAPSSSSDSESNMEVDPSPAPSTDGFTVVQKGKRRAAEARAPAAAKV
SRATNASRLRPPTPVAPPARATPSPRPVEQKKIQTPPPVILQEKAAWERVSLALKAKNINFTNARNLANGIQIKVQTPDD
HRALSSYLERISFHTYTLQEERELRAVIRGIPKELDAELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEGK
QIFNIRTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLCQTQGH
PANYRGCPRAPKINRRVARQNRLRASHPDTKASAPSVSQAKPAFVPAPVPSGSAWAKPLPYTNTATTPSSAIRPAPAIRP
SPANCPPTASDNLALAIDFFQSINFERVNALGDAIRAASTAQHFIAVVQEYADVYASLNTYVLPSLRR
>GB:BAA74713 copia-element retrotransposable element (Ty1_Copia-like) [Bombyx mori]
MADDASRKLLPEFTGTNFSTWIFRISCILEEKECKEAIEDGITEEILKSEKFKKKDAKARSLIVNCLSDKHLEYVRSATS
AKEMIENLRKIFKRKSTLSALYVRKKLLTLKCDPSVELSDHFNNFDMLIRQLEETGSTVNEQDKVCHLLLTMPDSYNTTI
TALETTNVELTTEYVKSKLLDAELKNQNNSMESQDAHSFLSCFKCGKTGHKAIQCRTGHLMRGQHRGKMGNVGYFNGSNT
RDFYRGNGRDFNPGNGRGFNRSNPRGNVRGQSRGSSRDTILQQGKSALSERNPFSFVASENVLSVDVYNEDIKFIIDSGA
SQNLVIDSYEKYMSNIEYLETKTKIYVANGQYLFSSKKGILNVKYNNLPIKIEALLVKGLSHNILSVKKLLEKGNSVRFH
KNSVSIAKGNNIIYGTMLNSLYAINLTLNLEQCYSINNDKDLWHKRLGHANRKHLKLLKLPISEKPCGICVEGKSTRLPF
STTPKPRSKYIGELIHTDISGPINIPTLTNEVYFHTIIDDYTHFCEVYLLQRKSEATDRLIEYVNRMERQIECKVKKIRS
DNGGEFKNEKLNKFCKDKGILQQFTLPYSPQSNGVSERMNRNIYNRARTLLIESGLPKTLWGEAVRCAVYQTNRCPSSNF
QTPAEKMFGNKDLTRLRIFGSKSWVHIIPKQDKLLQRAKEMRLVGYSPNGYRLWDPTSNKVIVSRDVRIDETQLNYKETE
EKHNIKGETYYEDELIQNDDTEKDTEGDQEIRIPNENDENMQHDRIPDKTNKEVSKNNQDDEEENEKLNKKGRINIQKYI
TRSGREIRKPKNLEEYDLNIAYCLLSGDPQEFEDAIHDKDWEKAIKTELNSQVKLETWEEATLPMGSKAIDTKWVFRTKQ
NGTKRARLVAKGFQQQNNDNHYAPVAKLSTIRLMMSLAVQLDLSLKQLDVPTAFLNGKLNDNVYIKCPKGMEISEGKVLK
LKRALYGLKEAPKCWNQRFHNFVTQKGFVQSQHDLCLYGKGKIWILLYVDDILYLGNSNEMIKELEKEFKVKNLGEVHQY
LGLEVTRTEDSLEIRQTEIIKRLLEKYHMQDCKSSKTPMEINFNVNIPSPSDIIEVPFKELIGSLLYIAVNSRPDIAYAV
SFLSRFLDKPTQELWTASKRVLRYLKGTSHQGLIYRKTEEYTKLIAYSDADWAADRTDRKSTSGCAIYQGQNLITWFSRK
QTCTALSTAEAEYVAGAHSMSELIHIKGILSDILSTSIISAHLLIDNQSTIKLIQNQMNTKASKHIEIKYHYIKDLIYKK
IVSISYVPTNENISDIFTKSSTIQKHNYFCSKLNLV
>GB:AAA66938 TyB protein (Ty1_Copia-element) [Saccharomyces cerevisiae]
MLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLP
NSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYT
TTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGLAGLDISTLLPFGQPV
IVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYHSF
IASNEIQESNDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNISESNILPS
KKRSSTPQISNIESTGSGGMHKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI
SDQETEKRIIHRSPSIDASPPENNSSHNIVPIKTPTTVSEQNTEESIIADLPLPDLPPESPTEFPDPFKELPPINSRQTN
SSLGGIGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITY
NKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKKRDGTHKARFVARGDIQHPDTYDSGMQS
NTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLI
QQCGMEEVRGWSCVFKNSQVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGLEIKYQRGKY
MKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINT
LAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQPYYKSQIGNIYLLNGKVIGGKSTK
ASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGN
NLYVYYIETKKNIADVMTKPLPIKTFKLLTNKWIH
>GB:AAF21678 pol polyprotein (Gypsy_Ty3-element) [Cladosporium fulvum]
NDRYRIPHTVRNIRIKRIAQHGAARTRTLLRNAEDPGTSSSTDVDTERLAPGSSGGLETRSTTFHIRTGKRINSPGMSDR
RELCNTEKAQASPTTTVFRTKIIVNGHKTDAMIDSGASGNFASESFVTRNRIATCKKKEGYELIAVDGSSLPSVERETIP
LPLAIQRHHEEITLDVTDMASHDIVLGMPWLRKHNPVIDWRRGVLTFRECECVIDIQPAQWQRSLADEARKQLNRIQLAP
TRRTEEPPSTGTDTGVGPPGHEVTGSDGSNAPSKDTNISELSIPKEYRKWSRLFEEERGKDALPKHQPWDHKINIQPGKE
PPWGPLYQMSEKELQTLREWLKEKLAKGWIRRSTSSAGTPCMFVPKANGKLRLVQDYRKLNEITIKNRYPLPNIEEAQDR
LTGSDWYTKIDLRDAFYAIRMAEGEEWKTAFRTRYGLYEFLVMPMGLTNAPASCQDLVNETLRDLLDVCVVAYMDDILVY
TKGSLQEHTKQVQDVFERLTKSGFKTAPEKCEFHKKEVKFLGFIISTTGITIDPAKTQSIREWPEPKTVKDVQSFLGLAN
YNRKFIKDYSKTAAPMTMLTRKDVNWKWGKEQTEAFKRLKEQCASAPTLRLFDGSKEVHIETDASDMAIGACLTQTHDGK
RHPVAYYSRKMTTAEQNYDIHDKELLAIVAAMQHWRVYVEGPPKLTILSDHKNLTYFTTTKELTRRQARWSELLGQYKFE
IKYTPGTENGPADALSRRSDYMEGKEPVQHKILKTNPDGSLSANTREFNNIVRILSDKEEQFPISQGKYQVPKDREEECI
RQHHDEPTYGHPGTSKTVDLIQRSFSFPQMRLKVLRYIKKCVHCQQNKAARHAKYGHLQFRTPPTKPWDEVTMDFITKLP
RSKDRVTGQAYDMILVMVDRLTKYAHFIPASEIYTAEQLGYLVLDRLIRYHGFPEVFITDRDKLFTSNYWKTLMGTIGIK
HKLSTAYHPETDGQTERTNQTLEQYLRHYINYAQDNWVSLLPMAQIALNNHKSETTSTTPFYANFGKDPNLSGTPGSHPQ
AERAIVTTETLKEVHKEARKAIEDAQQRLSQRRQDERKMAPLLKEGDKVYLLTKNLKTRRQTKKLDHVKVGPFFIDKVVG
PVNYRLRLPPDAKIHPVFHISKLEPADAETPCQESFHFEPEAENEFEVEKILDKKGQRYLVKWKGYDESENTWEPRINLA
NCYQLLRQFQKWRQDSRKQEAQERRASPDQTRSRPKYPHARTK
>GB:CAA27749 ORF 3 (Gypsy_Ty3-element) [Drosophila melanogaster]
VYHSMDWEKLVDQIKDQNENFRKSYKCLTQNRSTQAVTINRNAQVLVNSYNEIRELIQQNRKNLERKQCAKALNLLVTLR
EKLIFIKNKFSLQIEIPTIVNTPLRINLNEDSTNSDEEDRTIVKEDIKEEDLHDLTIPAKLMLKNDDKTNNAADSENNLT
MAEEAAAIRSYIREVACTVPEFDGQKIHLQRFIKAIKLVDLAKGPFEDIAVEVIKSKIVGTILNSVDNETTIPAIINKLQ
KVVVGETSSNVKAKLATVQQRGKTATQFTAEVDSLRKLLEASYIDEGIPLEHATGLSTKEAIETMIHRAEHESIKTVLEA
GTCTTMDAAISAYIRTSTRVTGDINKVMYFRGNRPNRGYGNANRGSNRRRGFNNNSIRGNYHNGYQNNGYQNNGYQNNGY
QNRYNGNNNRYNGYNRGRYNGNRGRNNSQNNYNRNNANVRVIQEQGNSQQPLGTQ
>GB:S70427 hypothetical protein 1 (Gypsy_Ty3-element) retrotransposon mgd1 [Drosophila melanogaster]
MGKNRGGVRHNIKKRIAHIKWLLYTNTPPPQWSKAQKLQAELDHCVEYLKKKIPTTRAHSENQIKSLTINKTPTPNPKSL
PVFKKRCPNDCEGPLFTPHCEHTCRHCSSTT
>GB:AAA66937 TyA protein (Ty1_Copia-element) [Saccharomyces cerevisiae]
MESQQLSQHSPNSHGSACASVTSKEVHTNQDPLDVSASKTEECEKASTKANSQQTTTPASSAVPENPHHASPQPASVPPP
QNGPYPQQCMMTQNQANPSGWSFYGHPSMIPYTPYQMSPMYFPPGPQSQFPQYPSSVGTPLSTPSPESGNTFTDSSSADS
DMTSTKKYVRPPPMLTSPNDFPNWVKTYIKFLQNSNLGGIIPTVNGKPVRQITDDELTFLYNTFQIFAPSQFLPTWVKDI
LSVDYTDIMKILSKSIEKMQSDTQEANDIVTLANLQYNGSTPADAFETKVTNIIDRLNNNGIHINNKVACQLIMRGLSGE
YKFLRYTRHRHLNMTVAELFLDIHAIYEEQQGSRNSKPNYRRNPSDEKNDSRSYTNTTKPKVIARNPQKTNNSKSKTARA
HNVSTSNNSPSTDNDSISKSTTEPIQLNNKHDLHLRPETY
>GB:S70428 hypothetical protein 2 (Gypsy_Ty3-element) retrotransposon mgd1 [Drosophila melanogaster]
MGWFGSDDSQTKDNTANVVNNLKIVDHTDDIQSLWLLLLIMTIVTVAQFILTLYVKHNKIIKRRYIGKAENSLDKI
>GB:AAB26436 ORF1 (LINE-element) [Chironomus thummi]
MVASPKTTNNEENLSQNQHGLNSSQQQHSSSVTILNIEEIFSEDVSQAADIEMTNLKPKKQISIKNFLNEASKAEKTPSR
SDVPNALLKRVANESKPKDGNKPLFVLPPVKKASSSGVPYLFGSPEQEKKRSTTSSYWGENSKTSEQQKTISVNTESNNN
KSQQKSKPPPIVISTGGAGEIKRLTNEINNQPGSFLIETKKGKQGTKTVTTESWDYYEKFIQLLKDKKHHFHTYSGQEPL
KKYVLYGLPDMEISELEKELKTEKITPVKIVKMTMKHKEHEQDDDQNYLVYFKKDVEQGGNFLEFLRKIKIVSSFKIKWA
DYKNRQAGPSQCSKCLRFGHGQNGCNKPSVCFRCSEQHDSKTCQYISKETNKVPLGKLKCFFCGEKHTAIFTGCKTRQEI
IEKWKSKSQNGNNQNQNKTAGHYSYGQRRNNPPTPHRPERSTRNVQHAPKPQWKKEYMEPSTSGTQKPVHQKQVPVNYKP
RNTNPPPNHKPSNQGNKNNLNNQQNNKERGKHWKKNQRKKQTERINQHQKPKQVVELMDSEDTGATSQTSMSLPEPSFSV
EVVNRNITTNQQAQSTSTRDKNISEIEESKCKYLISELLKLIAKNPEFIDEILQAIGSSAKNTAYNNGL
>GB:AAD19348 reverse transcriptase-element protein (LINE-like) [Fugu rubripes]
MQSCSLTHLSAASLEPSSTNNNIFNTIEVVSVPRLKVHQAQSRGAVNHHNLIKINTKAQVGETNITIKCGLLNIRSLLCK
SLLVHDLIADHHIDLFCLTETWLQEEEYVSLNESTPPTHLNYHIPRVTGRGGGVAAIYHSKLLINPRPKHGFSSFESLTL
GITHLNWRTEKPLLFVVVYRPPAGPHSEFLSEFSDFLSDLVLRTDKVIIIGDFNIHMDVINDSFRNGFISLLESVGFLQQ
INQPTHSFNHTLDLVLTYGVEVEHVSVFPQNPLLSDHSLITFTFMIKDSSMLRTQSYYSRCLSDNAVAKFKEAIPVLIPG
PPCVSPGINHYNLSPAEVDSIAEGAATSLRITLDSVAPLKKKIVNQRRCAPWYNSHIRTLKQKVRRLERKWHSCKIDSYH
VAWKDCLLVYKKALRKARTAYFSSLIEENKSNPRFLFSTVAKLTKSHSVLDPRIPSSLSGEDFMSFFTDKVLAIREKANQ
AIPTTGPSPDVLTVGTYRVSNEPLNSFSPIYFSEASSLIQKSKTTTCLLDPIPTHLLKDVLPLIGSSILDQINGSLVSGY
VPRSYKVAVIKPLLKKPSLDPDVLANYRPISNLPFISKVLEKVVVTQLLEHLQRNSLFEMFQSGFRAHHSTETALLKVTN
DLLIASDHGLVSMLVLLDLSAAFDTVDHSILLQRLEHVIGIKGTALDWFRSYLSDRYQFAHVHGVPSSYSRVSHGVPQGS
VLGPILFTLYMLPLGNIIRQHGINFHCYADDTQLYLSMKPEETEKLVKLQTCLKDIKSWMSSNFLLLNPGKTEVMVFGPE
PLRDRLDHMITLDGISLTSSLSVRNLGVTFDQNLSFNSHIKLVSRSAFFHLRNITKIRKLLTRHDAEKLVHAFVTSRLDY
CNSLLSGCPNNSLRSLQVIQNAAARVLTGIDKRDHITPVLASLHWLPIKFRIIFKTLLLTYKVLRCLAPSYLEELVTPYQ
PNRPLRSQNAGLLVVPRVSRVRMGGRAFSYQAPLLWNQLPVQVREADSIATFKIRLKTYLFEKAYCY
>GB:AAA36590 ORF1 (LINE-element) [Homo sapiens]
MGKKQNRKTGNSKTQSTSPPPKERSSSPATDQSWMENDFDELREEGFRRSNYSELREDIQTKGKEVENFEKNLEECITRI
TNTEKCLKELMELKTKARELREECRSLRSQCDQLEERVSAMEDEMNEMKQEGKFREKRIKRNEQSLQEIWDYVKRPNLRL
IGVPESDAENGTKLENTLQDIIQETFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRV
TLKGKPIRLTADLSAETLQARREWGPILNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLTDFVTSRPALKELLKEA
LNMERNNRYQPLQNHAKM
>GB:AAB92393 reverse transcriptase (LINE-element) [Drosophila subobscura]
QWWRMFLMKSLRLLQINLHHCKAASAALILRLVASGGDIVLIQEPWVVGGRVCGLATKDYNLIVAQTEGKIRTCILARKH
LNIFLLHNFSNGDNTAASLELQGTRLNLVSSYMAHEESDPPSDLVRKIVSDSERSDTSLLIGCDANAHHTQWGSSDTNVR
GESLFSFILNSNLFIGNRGNDPTFIIKNRQEVIDLTLLSHKLLDTIKSWRVLEDHSFSDHRYIETTLSLESTIPTSYVNP
RKTNWDTYSAKMEELLPPLAPKCPDTQDDFNRLVDNFTEACNKAFMAACPSTKPRGKKKPPWWSKHIDTLRKDCRTLFNR
AKSSSEVAHWENYKSKLTLYKKETRRAKRASWHKFCSEIEDTSEAARLRKVLSKTSPSVGYLKRTDGTWTNSSEDSLHIL
LETHFPGCTTIEPADTPSEGPETSMGHILTKRNISWAVNSFKSYKSPGPDQVIPAQLQKAGDVAINWLQSIFRKILTVGK
IPRAWLKAKIVFIPKAGKPSHTTPKDFRPISLSSFLLKTFERLVGLQLRKTIKPQAVRRSTCLPKREIHGNGTP
>GB:AAA88882 Tc1-element transposase (Mariner_Tc1-like) [Drosophila virilis]
MPGQRINENVIQLVYFHYHKGKCAKELAEMFSIKLRTIYNIINRAEKENRLELKHSGGRPAKLSRRDHSKILKQINENPQ
TSLRQLALDLKNDCNKTVSHETVRKVLKMHKYSSQIARKKPLLSAVNIQRRLNFSITNVNKPAEYWDDVIFCDETKIMLY
YHDGPSKVWRKPNTALEQKNIIPTVKFGKLSVMVWGCISSKGVGELRIFNDVMTKEFYLDILKNELSRSAIKFGFVDPQN
PSKQRYKLYQDNDPKHKSFLCRTWLLYNCSKVIDTPAQSPDLNPIENLWAFLKKRVGKRSPTNKNALIKAIQEEWIKIPE
IYDLHNLIQSMSRRLRAVMDANGQYTKY
>GB:CAA56855 planarian mariner-0 gene (Mariner_Tc1-element) [Girardia tigrina]
MEISEIRILMKYEFHRGATTRQAVGNINSVYPTQAVTQTTVAHWFKRFRSGDFDLSNQPRGRPEIKVDNDALKADVEADS
SQSALELASKFGVAKSTILIHLKQINKVKKLDKWVPHELKDEHKQQRLDACLSLLSRNKADPFLHRIVTCDEKWIMYDNR
KRSSQWLDPDEPPKHFPKRKVHQKKLMVTVWWSSYGVIHYDFMVPGTSITSDVYCSQLDDMMEKLAIKQPKMFNRLTPIL
LHDNARPHSAKNTVAKLQQLGLETLRHPPYSPD
>GB:BAA20419 reverse transcriptase (LINE-element) [Mus musculus]
KKQEGNPSTNLKEDSHKNRMPPLTTKITGSNNYFSLISLNINGLNSPIKRHRLTNWLHKQDPTFCCLQETHLREKDRHYL
RMKGWKTIFQANGMKKQAGVAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYAPNKRAATFTKETLVKLKA
HIAPHTIIVGDFNTPLSPMDRSWKQKLNRDTLKLTEVMKQMDLTDIYRTFFPKTKGYTFFSAPHGTFSKIDHIIGHKSGL
NRFKNIEIVPCILSDHHALRLIFNNKINNRKPTFTWKLNNTLLNDTLVKEGIKKEIKDFLEFNENEATTYPNLWDTMKAF
LRGKLIAMSAFKKKRERAHTSSLTTHLKALEKKEANSPKRSRRQEIIKLRGEINQVETRRTIQRINQTRSWFFEKINKID
KPLARLTKGHRDKILINKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPIS
PKEIEAVINSLPAKKSPGPDGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPTKIENFRPIS
LMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMI
KVLERSGIQGQYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEE
VKISLFADDMIVYISDPKNSNRELLNLINSFGEVAGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIATNNIKYLGVTLT
KEVKDLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRTNIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFIWNNKKP
RIAKTLLKDKRTSGGITMPDLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFNN
WCWHNWLLSCRRMRIDPYLSPCTKVKSKWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLM
KLQSFCKAKDTVYKTKRPPTDWERIFTYPKSDRGLISNIYKELKKVDLRKSNNPLKKWGSELNKEFSPEEYRMAEKHLKK
CSTSLIIREMQIKTTLRFHLTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWNCRLVQPLWKSVWRFLRKLDIVLPEDPAI
PLLGIYPEEAPTGKKDTCSTMFIAALFIIARNWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFLAKWMDLESIIL
SEVTQSQRNSHNMYSLISGY
>GB:AAA21780 gag-element protein (LINE-like) [Neurospora crassa]
MSCDERSDGVVSSLPMAIDGGARGLENSVHNPLAEISACNDPEAALTAKTSDKTEEDDETLKKFIARANKSTDYDTVSTE
DRRWARELLLEFAKARVGKSGSTRPEADKAGTDQFVTRKDFDDLKKDILKEIKKGAQEAPKRWADVVAKASPSKIGATLQ
QPPTTTKKFVPSNLERQLTIKGATIAAEFVNRSNEDTKTTLATCLGKKKPGLIVRAATRMPTTGDYVIVFDEPTRTWCWR
NQAWAKEVFGPDAFITMSTVGVLVRGVPWDSVDNYTTAEAISNVAKERNPEASIIRVRPWKRRDGESRGLLLVEVATASA
ACFLQDNLFLWDGGAYPCEPFQASSNVQQCFRCWGIGHTARFCRQDDICARCGEAKHEGDRFGEVNCPSNDDKSLVYCKP
CGKKGHCAYNRKECPILRKAIAKASVAHAERPRAFAPARTQPERCWSRRQRLWTRVSCQTPPPAPVLLLPWRDMLEEAQR
GDGRER
>GB:AAB26437 reverse transcriptase homolog (LINE-element) [Chironomus thummi]
MDCRQQSINVLYWNANGLTDKMLAFLDYLSKQNVDVACISETFLKPNSKIDSHPDYVIHRLDRVDRPKGGVAIIVKRNLK
HQLQPSYNTKLMECIGIKVFINDTDSCHILSVYLPRGSKGGEIDLHLRDDINKITNLRGNYYICGDFNAKHREWNCNVAN
KSGNILQEMSGEFVIYFPDSPTYYPEDRNKSVSTIDLMLSNSNSNLETTELQCTEAMSDHCAVYFQIKTSKIDRTENTVY
RYDYKNANWKKFKAQISRRIEDNIGENSCNTTDEIENHIKILSELIMEARNSSVKMKKIKFESTKLTPEIKDLINTKRSL
RRRWQRSRDNQLKSELNYLQRVINEKIKELKNKNWNKRLSEIQPSNQTVWRIAKFCKKGSKTMPPLTNSGKTFITNKEKA
SALSEYFREAHENPLEQNDPQHTQEVNNTVKEALEQDNDENPELTDVNEIVSIIRNLKNPKAPGLDEVNNILIKNLPEKG
FEYLKFIINSCLKLNHFPKVWKHAKVIPIPKHGKPASELSSYRPISLLSSISKILERVLLNRINDHLEDNNIIPNQQCGF
RTGRSTSHQLIKVIKSAKENLNNKKSTGMIFLDVEKAFDRVWHPGLLYKMLKLRFPLPLIKTVRSFLSERSFAVFIKGQF
SEIKVIKFGVPQGAVLSPTLYNIFTYDVVRETTNNIGLFADDTALYHSAENSADIVTHLQHTGRKVQQYMNKWKINLNKQ
KTQALFITNRHSRQLPGNNIKFLNENIKWETEAKYLGMVIDNRVTLKPHVEYVTNRAHTALRQLYPLISRNLQLDVRNKL
LIYKLAIRPIFTYGCSAFGSMAKTHLQKLQVLQNKFLRIVLNKTRYERITDLHTEAKIPSIEGSRRKVASESSTVSLASQ
NTE
>GB:AAA67726 ORF 1 (LINE-element) [Mus musculus]
MAKGKRKNPTNRNQDHSPSSECSTPTPPSPGHPNTTENLDPDLKTFLMMMIEDIKKDFHKSLKDLQESTAKELQALKEKQ
ENTAKQVMEMNKTILELKGEVDTIKKTQSEATLEIETLGKRSGTIDASISNRIQEMEERISGAEDSIENIDTTVKENTKC
KRILTQNIQVIQDTMRRPNLRIIGIDENEDFQLKGPANIFNKIIEENFPNIKKEMPMIIQEAYRTPNRLDQKRNSSRHII
IRTTNALNKDRILKAVREKGQVTYKGRPIRITPDFSPETMKARRAWTDVIQTLREHKCQPRLLYPAKLSITIDGETKVFH
DKTKFTQYLSTNPALQRIITEKKQYKDGNHALEQPRK
>GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) [Mus musculus]
MPPLTTKITGSNNYFSLISLNINGLNSPIKRHRLTNWLHKQDPTFCCLQETHLREKDRHYLRMKGWKTIFQANGMKKQAG
VAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYAPNTRAATFTKETLVKLKAHIAPHTIIVGDFNTPLSPM
DRSWKQKLNRDTLKLTEVMKQMDLTDIYRTFYPKTKGYTFFSAPHGTFSKIDHIIGHKSGLNRFKNIEIVPCILSDHHTL
RLIFNNKINNRKPTFTWKLNNTLLNDTLVKEGIKKEIKDFLEFNENEATTYPNLWDTMKAFLRGKLIALSASIKKRERAH
TSSLTTHLKALEKKEANSPKRSRRQEIIKLRGEINQVETRRTIQRINQTRSWFFEKINKIDKPLARLTKGHRDKILINKI
RNEKGDITTDPEEIQNTIRSFYKSLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINSLPAKKSPGP
DGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQE
HIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGQYLNMIKAI
YSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEVKISLFADDMIVYISDPKN
SNRELLNLINSFGEVAGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIATNNIKYLGVTLTKEVKDLYDKNFKSLKKEIK
EDLRRWKDLPCSWIGRTNIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFIWNNKKPRIAKTLLKDKRTSGGITMP
DLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFNNWCWHNWLLSCRRMRIDPYL
SPCTKVKSKWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVYKTKRPP
TDWERIFTYPKSDRGLISNIYKELKKVDLRKSNNPLKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFH
LTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWDCRLVQPLWKSVWRFLRKLDIVLPEDPAIPLLGIYPEEAPTGKKDTCS
TMFIAALFIIARNWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFLAKWMDLESIILSEVTQSQRNSHNMYSLISG
Y
>GB:AAA67727 reverse transcriptase (LINE-element) [Mus musculus]
MPTLTTKIKGSNNYFSLISLNINGLNSPIKRHRLTDWLHKQDPTFCCLQETHLREKDRHYLRVKGWKTIFQANGLKKQAG
VAILILDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYAPNARAATFIRDTLVKLKAYIAPHTIIVGDFNTPLSSK
DRSWKQKLNRDTVKLTEVMKQMDLTDIYRTFYPKTKGYTFFSAPHGTFSKIDHIIGHKTGLNRYKNIEIVPCILSDHHGL
RLIFNNNINNGKPTFTWKLNNTLLNDTLVKEGIKKEIKDFLEFNENEATTYPNLWDTMKAFLRGKLIALSASKKKRETAH
TSSLTTHLKALEKKEANSPKRSRRQEIIKLRGEINQVEKRRTIQRINQTRSWFFEKINKIDKPLARLTKGHRDKILINKI
RNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGP
DGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQE
HIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAI
YSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEVKISLFADDMIVYISDPKN
STRELLNLINSFGEVAGYKINSNKSMAFLYTKNKQAEKEIWETTPFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLKKEIK
EDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVWNNKKPRIAKSLLKDKRTSGGITMP
DLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGDKTIQWKKDSIFNNWCWHNWLLSCRRMRIDPYL
SPCTKVKSKWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVNKTKRPP
TDWERIFTYPKSDRGLISNIYKELKKVDFRKSNNPIKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFH
LTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWECRLVQPLWKSVWRFLRKLDIVLPEDPAIPLLGIYPEDAPTGKKDTCS
TMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFLAKWMDLEGIILSEVTHSQRNSHNMYSLISG
Y
>CER10_CE#LTR/Pao 9718-11152 via tfasty with CER8_CE_15491-16927, 2 frameshifts. [Caenorhabditis elegans]
SCCVKCKKVFGMPYPYPNTKQLPGCRTEPSKPFAKVGLDYLGPVEYLRDDQESLGKAYVLLYTCLVTRAAVLRVVPDATT
ESYLMALRTIFHQVGVPSEVHSDNAAIFKLGAKMTNDDRWQGGVYERIVGLLKHQIHKICGDQKLDFFSLQYVVSSAQAM
INNRPLVAHARSPNDMIALRPMDFMIPGVMIETPRTPADSPTTSTTEIRTRAHLEKFESALERLWTIWTFGVMLILREVS
HKHKRCCDPKPEVGDVVIINTNYVSRHRWPLALVVQVNQSKRDGEIRTAVVRCKGKLYKRSVCQLIPLETSRQDIRHGTG
PDNDTPANDTNNDTDKDTAGSDQCRPCPTLPTPALLDFENSHFAPAFPAQILPNIGEEPRDITLDRWKSHEAIGSEIDDF
EGPDYDTNNPLFHEDGEAEDRPVEYVDPITAIPEIAYDNAETRLPQGRTREYLGRKAKAPYINYNHAEITRVLSDPSPP
>BEL-651_AA#LTR/Pao 50-6526 via tfasty with BEL-610_AA, 8 frameshifts and 4 stopcodons. [Aedes aegypti]
MNPASHCMLCDRPDNADDLVQCDKCDGYVHFACAEVGDSIADEDRSFTCQRCIERLEAITVSSQRSSKRTSTSTRSSLSA
ARLTLRLQQLETERQNRLKELEDAERFQRLRRQVEADFEKQKLEALESQLLDEEENRSTRSRVSARVIHANTHKWIGSTS
QSDDVVGRPSNRTEEANEPQIFESTCNVEIQSGNPEIPATSTSRPALKNIGVPKQKTSVPVSLAGVGSVSDPNSRTRDMS
TYEFHIDTSRGAGQSTSNQVRDSVSVSNVRLESIAESVQTSTPKPPTDNVSIPKVQIASKLRDKSLTVSSQIAQQRLPCK
GSTTGEPPPKASVSQPISELDPMQYHKSGVPGKRLGPKVGQQLSEIKLSERLPPTQVPSTSTSQSHQQQCAEPVLSSTGH
TATRSSNEFPSTQRSFQQYSQWNQSALLPPPGYNKLGSKPVIHYQQQWPSGMAQWSQPQQPHPLNSTEFHQNQVPISSAP
LQPLGQHPIPSSSLTEAVPVQISPSSNRRTAPTAEQLAARQVIPRELPTFSGDPQDWPLFFSSFNNSTEACGYNDSENLA
RLQRCLRGHALESVRSRLLIPESVPHVIEHTLARLYGRPEVIIHSLLKRVREIPSPKGDDLKTLIKFGMGVGNLVEHMIL
ADQRQHISNPMLLQEMVDRLPPNLKLQWASHKRMYQTVDLGEFNGCVMDLATMASDVTLHMDQAQSSSSRLEKPKKDKMS
KEKLFVHQQTPSTSGSKHISSTRQKEPAEVVLKPCTYCNKTDHRIAECQEFKQLDLDGRWKVMRRKGLCRICLIPHRTWP
CRSKQECGVGDCRMRHHPLLHSRKAELSASQSPSSAVRNVTYQHHHATTSYALLRYLPVTLYGNGKSIELFAFLDDGSSS
TMLEAEVANLLGIEGPNEPLALGWTGDVTRIEKESQRIEVTIAGGNNGKCFLLKAKTVGPLKLPSQTVDYEELCETHPQL
RHLPLKSYTSVSPRLIIGVDNARLISSLKNRESAAGDLIATKTRLGWSIYGTHLVNKTSVGYVNTHVKLSQEDTDFTDLF
RQFLAVEEATIKQNPQSEEDKRALEILQETTRRVGGRFEVGLLWKYDDPCLPDSFPMAVRRMEALEKKLEKDPYLDGKVR
EQISEYVEKGYAHRITAAELESTESGRVWYLPLGVVRNPRKPEKVRLIWDAAARVEGVSFNDRMLKGPDLLTALPTVLLR
FRQKSIAFSGDIREMFHQFLIRQRDQQAQRFVFRERPGQAPQIFVMDVATFGAACSPCIAQYLKNRNAEEHAEQFPDAAK
AIIENHYVDDYLDSVDTVEEAVQLIQEVKHVHALAGMEIRNFSSNSAKVLERVGGEWESSxPKSDAIVERVLGMVWRPSE
DVFSFELDLKEEIRNIMKGMIAPTKRQVLRTIMSLFDPLGLVAHFTHGKITMQQVWRTGAGWDDAISGKILEDKSGASRR
DARILRCFFADTGAHPKDAEIHVSRMHMLARLRSGAPQCTLIAANTKVAPLKPLSIPRLExxAARVGDRLLDRICKALTI
PVVARYLWSDSTTALAWLRSETRRYHQFVGFRVGENFLSTTTINEWRKVPSKINVADHLIAxFGSSTKWRDGPSFDPEDW
WYAGPTFLRDPDDSWLKQTDHMFETSEDLRNVFLHIHRTLPAPLIDLSRFSKWSRLNRAAGYVVRAVKLFLGWKAEGPLT
HEELQKAESLIWRQAQMHEYPDDYATLVYDRDDPDREQKLIVKSSPLYKMSPKIDEDGVIRMDSRIIAAPRITLDMKYPI
LLPRNNQVTKLLVESYHERFLHQNNETVCNELRQRFRIPRLRTVISKIARQCQHCRIGKAAPQVPIMAALPEFRLTGFVR
PFTHTGIDYFGPVYVKQGRSQVKRWIALFTCLSVRAVHLEVVHCLSTQSCVMAIRRFVARRGSPITFCSDNGTNFVGANN
LLKEQLQKISKDCAQSFTNSQTKWLFNPPLAPHMGGSWERMVRSVKVAMAAIAHHPRHPSDEVLETIIVEAESIVNSRPL
TYIPLDSVNQEALSPNHFLLYGTQGINQPSQELTVDHSTLSLRDSWKLAQYLVDTFWRRWVNEYLPTLTRRTKWFQPVKP
MMPGDLVVVVEETTRNGWLRGRIVEVVKGKDGQVRRAVVKTSRGILSRPATKLAILDVRGTTGAPENENSSEPELHGRG
>YPRIME_888-3187#Other/subtelomeric [Saccharomyces cerevisiae]
RAYGATYVDDPFCRRYPYRYPELQLLAFAGPQRNVYVDDTTRRIQLYTDYNKNGSSEPRLKTLDGLTSDYVFYFVTVLRQ
MQICALGNSYDAFNHDPWMDVVGFEDPNQVTNRDISRIVLYSYMFLNTAKGCLVEYATFRQYMRELPKNAPQKLNFREMR
QGLIALGRHCVGSRFETDLYESATSELMANHSVQTGRNIYGVDSFSLTSVSGTTATLLQERASERWIQWLGLESDYHCSF
SSTRNAEDVVAGEAASSNHHQKISRVTRKRPREPKSTNDILVAGQKLFGSSFEFRDLHQLRLCYEIYMADTPSVAVQAPP
GYGKTELFHLPLIALASKGDVEYVSFLFVPYTVLLANCMIRLGRRGCLNVAPVRNFIEEGYDGVTDLYVGIYDDLASTNF
TDRIAAWENIVECTFRTNNVKLGYLIVDEFHNFETEVYRQSQFGGITNLDFDAFEKAIFLSGTAPEAVADAALQRIGLTG
LAKKSMDINELKRSEDLSRGLSSYPTRMFNLIKEKSEVPLGHVHKIRKKVESQPEEALKLLLALFESEPESKAIVVASTT
NEVEELACSWRKYFRVVWIHGKLGAAEKVSRTKEFVTDGSMQVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGR
LRDGGLCYLLSRKNSWAARNRKGELPPIKEGCITEQVREFYGLESKKGKKGQHVGCCGSRTDLSADTVELIERMDRLAEK
QATASMSIVALPSSFQESNSSDRCRKYCSSDEDSDTCIHGSANAST
>Helitron1_OS_hel#RC/Helitron spliced mRNA [Oryza sativa]
MVLVHGLSATAMWAIHFFFVRTNHRTCLCERLVLCVSALILFTCTVGTDLRSSILFYAVHCVHGVCDLIATCSSTNWKHP
YTIGSFLSRPHHNSLHMVYAPWVSALWGTSFCIQIVSFLGVPDLCLFIIDRLILVFHRGEDLHGLDRSFKGDFGFQLVFL
VVASVISLIADRLSFQSPSFFRRRLEDMSDQGLNRVRRVRASRERRAANILSRQLPMHIEHTIVEPVQSTCGNERKRARS
IMNFTPELSKLNRQRRSLLSSKMPPLALTCTNNVLNAHNSGSSSRTDKEYVQSLKACYPGRSYYGPPTYECPYCGAMFWY
QERVKSTSAISKRKIIYNLLQRCIDKSINTGNAPYVFKINGVVHHWIGCLLPSHGSPPKFAQLYIYYPENETQNRLNIFE
NDGDNADRADPEIIAALSLMLDSENSLVQNFRYARERLSEHGNQQLTLRLLGCNAKDDVQYNLPTSGEISGIIVGDFLAK
EYKFDVLVYDKDHGLHQVSPLHPSYMALQYPLLFPYGERGFHLGIKYNNYDGIGRKYVTMQEFFRYRMHYRLNEPNPFTC
YGRLSDQIDVDVFSTIEANRLQFFIDHQPELRAESVDGIVDAIDGIVDAIDRGVTDGDSVGKRMILPASFIGGRRYMYSL
NIQVCDYLLFKIIPVLYTVEFQKRGLPHIHCLVWLAAPTAEISASVIDGFICAEIPDYDTDRLGYELVSEFMMHGPCGDA
NKSCACMKNNKCSKNYPKDFQDETIIDEAGFTIYRRRNDGRHIIKNGIPLDNRSVVPYNMKLLKTYQAHINVEWCNKSNL
IKYLFKYITKGQDRARIYFETTGKTTNASPNHDLAPQDEILEYMDGRFLSTCESLHRLFEFDIHYRMPSVERLVVHLPGK
NYVRYEKGSNLRAVLKSPAAKSSMLTEWFEANKKYPKAHSLTYCEFPKEQTWEPSSRVWRPRTPAPKIGRIYYVHPTAGE
LYYLRMILMIVRGAQSYADVRTYNGIVYSTYREACEAQGLLEGDNEWYLLFDEAILTASSQQLRQLFVTILLYCSVIDVR
SLFDKYWIHMTDDIHNRLKKALDNPHCIIPQDHLLNLLLHELATVFAKSGGDIKDFNLPHPTSIAHIAGGNRLIDEELTI
DPLMLSMHADSLITQLNTEQKHIFDVISSRVAHNQPGFFFVCGHGGTGKTFLWNAIIAKLRSQNKIVLAVASSRVASLLL
PRGRTAHSRFKIPIDIDETSICNIKRGSMLAELLIEASLIIWDEAPMTHRRCFEALDRTLRDILSQTCATNSIIPFGGKP
VVLGGDFRQILPVVPKGSRHAIVNASITNSDLWKHVTVLTMNINMRLLNTNLEQKQKDELHDFSKWVLAIGNGTIPMTTK
EGESYPSWIEIPHDLLIITDGDKISAIVNEVYCDFFASYMNPEYLASRAIVCPNNATIDEINDYVIGLVPREARIYLSCD
TISKCAEQIPDFDLLYPPEFLNSINAANFPTHRLILKEGVVVMLLRNLNQSIGLCNGTRLLIVALGDRILQCIILIGSNI
GDTVYIPRITLSTTKMKWPFTLQRRQFPIRVCYAMTINKSQGQTLQRVGVYLRKPIFTHGQLYVTISRATSRSGLKILIE
NDDGSCGNHTRNIVYSEILTATFPAVLFLTLPYTL
>Helibat1_hel#RC/Helitron 127-4588 via tfasty with Helitron1_CE_hel, 1 frameshift. [Myotis lucifugus]
MSKEQLLIQRSSAAERCRHYRQKMSEEQRASDLERRRRLQQNVSEEQLLEKRCSEAEKQRRHRQKMSKDQRAFEVERRRW
QRQNMSREQSSTSTTNTGRNCLLSENGVHEDAILEHSCGGMTVRCEFCLSLNFSDEKPSDGKFTRCCSKGKVCPNDIHFP
DYPAYLKRLMTNEDSDSKNFMENIRSINSSFAFASMGANIASPSGYGPYCFRIHGQVYHRTGTLHPSDGVSRKFAQLYIL
DTAEATSKRLAMPENQGCSERLMININNLMHEINELTKSYKMLHEVEKEAQSEAAAKGIAPTEVTMAIKYDRNSDPGRYN
SPRVTEVAVIFRNEDGEPPFERDLLIHCKPDPNNPSATKMKQISILFPTLDAMTYPILFPHGEKGWGTDIALRLRDNSVI
DNNTRRNVRTRVTQMQYYGFHLSVRDTFNPILNAGKLTQQFIVDSYSKMEANRINFIKANQSKLRVEKYSGLMDYLKSRS
ENDNVPIGKMIILPSSFEGSPRNMQQRYQDAMAIVTKYGKPDLFITMTCNPKWADITNNLQRWQKVENRPDLVARVFNIK
LNALLNDICKFHLFGKVIAKIHVIEFQKRGLPHAHILLILDSESKLRSEDDIDRIVKAEIPDEDQCPRLFQIVKSNMVHG
PCGIQNPNSPCMENGKCSKGYPKEFQNATIGNIDGYPKYKRRSGSTISIGNKIVDNTWIVPYNPYLCLKYNCHINVEVCA
SIRSVKYLFKYIYKGHDCANIQISEKNIINHDEVQDFIDSRYVSAPEAVWRLFGMRMHDQSHAITRLAIHLPNDQNLYFH
ADDFAEVLDRAKRHNSTLMAWFLLNREDSDARNYFIDNYYYWEIPQHYVFNNSLWTKRRKGGNKVLGRLFTVSFREPERY
YLRLLLLHVKGAISFEDLRTVGGVTYDTFHEAAKHRGLLLDDTIWKDTIDDAIILNMPKQLRQLFAYICVFGCPSAADKL
WDENKSHFIEDFCWKLHRREGACVNCEMHALNEIQEVFTLHGMKCSHFKLPDYPLLTNANTCDELYEQQQAEVLINSLND
EQLAAFQTITSAIEDQTVHPKCFFLDGPGGSGKTYLYKVLTHYIRGRGGTVLPTASTGIAANLLLGGRTFHSQYKLPIPL
NETSISRLDIKSEVAKTIKKAQLLIIDECTMASSHAINAIDRLLREIMNLNVAFGGKVLLLGGDFRQCLSIVPHAMRSAI
VQTSLKYCDVWGCFRKLSLKTNMRSEDSAYSEWLVKLGDGKLDSSFHLGMDIIEIPREMICNGSIIEATFGNSISIDNIK
NISKRAILCPKNEHVQKLNEEILDILDGDFHTYLSDDSIDSTDDAEKENFPIEFLNSITPSGMPCHKLKLKVGAIIMLLR
NLNSKWGLCNGTRFIIKRLRPNIIEAEVLTGSAEGEVVLIPRIDLSPSDTGLPFKLIRRQFPMMPAFAMTINKSQGQTLD
RVGIFLPEPVFAHGQLYVAFSRVRRACDVKVVNTSSQGKLVKHSESV
>BEL-645_AA#LTR/Pao 61-5854 via tfasty with BEL-31_CQ, 5 frameshifts. [Aedes aegypti]
MASDSDSVNQRVLDFTETPCGICGPSTQDEEMIGCDGCSAWFHSRCVNVVSGKLPKKWFCQNADCQVKAEEYRKQREARK
QQRSRKEVDESDKSSVNSRLGASSVEAKVRALEERQKRQYEEMEAELQLRKREREMQRAFERKKMELELQMRAEEEEEQK
AWQAEMLRKKAEQIERMKANQESFEKKMAAMDKQLAEFSIQKGPTSASKLGGDGRASKVNEKVLKLSKENVKKLAADDDD
LDEDSEDDEESEVSSQSSESSDEECPIPPSRHLKRKGMQKVDEVSQNGLEQQRTGPTKAQLAARKGLTYKLPKFSGKPAQ
WPLFYAAYKASNEACGYMNHENLMRLHEALEGDALELVSGQLLLPQSIPRVIEKLRRHFGRPEQLLESLLDKVNRLQPPK
ADNLRSFVPFGNTVEQLCSHLEAAELHQHLVNPLLIKSLVDKLPDREKREWIHFRRGRGETTLRTLTDFLMDIVADACEA
NVDVEFKPPQQPKAVPQSGKKLHKEKGGLYLHNEASNPAATSSEVKKLKPCKMCQGTNHRLRHCADFKKLRYVNRLRLVT
REKLCHVCLNEHDGQCKFRIRCNVGECREPHNPLMHPVENTVGLSAHIRTNCTVLFRIVPVQLHCGEKTATVLAFLDEGA
SVTLVEKKLADRLGAFGIQERLTIRWTGNVSRVEETRRTSLWISSTNAGANDKMLLHTVHTVGKLMLPRQKLDSEELAAE
YGHMRGLPIESYDGQPQLLIGANNIHSFAPMEAKIGTTMEPIAVRTNLGWTVYGPRQSTTVASGNYLGYHQRITNDDLHE
LLKSHYALEESVVAIPQETAEEKRAREILERTTKRVGDRFETGLLWKTDDPRFPDSYPMALRRMKQLEKRLEKNEKLREN
VCRQIDEYQQKGYAHLATAEELNGTASDQVWYLPLNVVQNPKKPEKVRLVWDAAATVQGISLNSQLLAGPDMLVPLVKVL
AGFREWSIAFGGDLKEMFHQLKIRAEDKQKQRFIFRKHSEDPPSVYVMDVATFGSTSSPCSAQFVKNRNAEEFASQYPEA
SAAIIHRHYVDDYFDSVDTEEEAVKRAQEVRLVHQKGGFEIRNWVSNSPEVLRSLGEEKPAAPVHFGRDKQTSNERVLGV
IWDPDMDQFAFSTTHREELLPYLYEGKRPTKRLVASCVMGFFDPLGLLSPFTIHGKIVIQYLWRSGCDWDQEIDPDSWQL
WKRWTALLPVVEAIRIPRCYIGGAKSAEVDSLEVHIFTDASEHGYGCVAYLRAVINGAVHCSLMMSRAKVAPIKRQSIPR
LELMGAVLGARISQTVLDMHSYQICRTVFWTDSRTVYSWLHSDQHRYKQFVAFRVGEIQELTKVTDWRWIPTKLNVADVL
TKWGQGPPLQNDGEWFNGPSFLYRPEEQWPTQEATIEETHEEARGVVLFHGVIDVEPISRWTKLLRVTASVVRFIANCRR
KKRGEPIVTTRATAKQRQMIEATAANYAALHAPLQREELQRAETLLWRQAQWDSFPDEMSALTNNLKRQPGRPVENIKKS
SPIYKSSPVLDDEGVLRMDGRLANSEESSFDKKHPIILSRAHEITQRLIQHYHEEFGHANSETVFNEMRQRFQIPKMRPA
IQQVVKNCVWCKVNKCRPRSPRMAPLPVERVTTQHRPFSSVGLDYLGPVEVTVGRRKEKRWVAVFTCLAVRAVHLEVVHS
LTTESCRMAITRFSSKYGKPQQIFSDNATCFRGANNEMVKLEKINQECAETVCSSTTAWHFIPPGIPHMGGVWERMVRSV
KEAMRALDDGRKLTDEILVTTLAEAEDMINTRPLTYLPQDSSECEALTPNHFLRGTVSGADLKVDGGSTAPAEALRNVYK
RSQFLADRMWERWTKEYLPTINQRSKWFDDQKPLEVGDLVFVVDGKNRKSWRRGVVEAVIKGSDGRVRQADVRTADGKVQ
RRGVVNLATLEVR
>BEL-617_AA#LTR/Pao 11-5848  [Aedes aegypti]
MSEDAATXNCGACKKPDSADAGMVACDDCSVWFHYSCAGVSPGVAERSWKCKTCLAPLGTTPLNTGVSKKNPKSAAAGKK
GDDGKSIXSNVGSKTAKNVPPPRSIRTTSSNARLQAQLTLQRLEEEALLEKRKMEEERRQLEEEKALMEKERAIRRRELA
AEEKFIKAKYEVETRLAEEDGSARLSVAAGMVTGKVHDWLKENQMQLNVALKVPQNDREAKPVESLKVPVRDHDSDSKSN
PKSTIADFHPERSNLTERVERDEELEDLNPCCRQEAHCIAGQGARSISREMGPTAEQLSARQIWPKKLPSFSGDPEDWPL
FYSSYETGNTACGFSNVENLIRLRECLRGPAREAVLTKLMFPHSVPSIMETLRRLYGRPELLVKNLLNKVRRLETPKPER
LDTLISFGMAVNQLCDHLEAANLEGHLFNPTLLEELVEKLPATVKLEWVRFKRLFRHPSLKEFGEFMETMVADASEVTTL
VQPKSGPCKSDKAPRREKGQVFTHSSTTVESNSERLPCPICSGTDHRVRNCEKFKQMNVESRIKAVERWQLCGVCLHDHG
KWRCRTKIRCDVTGCQGRHHPLLHRPLTSTQGAVQVHQRMQKSVLFRIIPLTLHHGTRRYDTYAFLDEGSNMTLVETSLV
RNLGIEGVPEPLELKWTSDIGRKEYSSQRADIIVTGKGPTNSYCLNSAHTVDSLNLPSQSLSIENLHERYPYLRDIPIAS
YEKAVPRVLIGLDNIELFSPLECRVGGSGEPIAVRCLLGWTIYGPVTSESATPGIVSVHRCGCDRDQDLTEMIRKQYLLE
DAGISPFTLPEPAEEKRAREILERTTVKVDGHYETGLLWKSDDIKLPDSRPMALSRLRSLETKLAKNPELRLNVHKQINE
YIRKGYAHKATEEELAAMNKQQVWFLPLNVVTHPRKPDKKRLVWDAAARVNGVSLNSQLLKGPDQLVTLPSIICKFRERS
IGFGGDVREMFHQLKIRPSDKRFQLFLFRFDTTQPPDVYVMDVATFGATCSPCSALYVMRLNADACKEEFPAACVAIKEK
TYMDDYYDSLDTPEEAGVRAMQVREIHARAGFDMRNWVSNSPQVLEVLGEEGNKLLPIAADKQASERVLGMTWEPTADVF
LFSVNLREGLTDYIIGNRRPTKRAALRCIMSFFDPLGLLSPYLVHGKIIMQDLWRSGIDWDTEIGDAEYAKWSEWTNLLK
KLDNVKIPRCYFQNIRPESLLDLQLHVFTDAGEQAYGCAAYLRYAIGKNVKCSLVMGKSKVAPLKALSIPRMELQAALLG
SRLMESICSNHSLKITGRYLWTDSSTVLSWIRSDHRRFKPYVAHRVGEILSLTQPEQWNWIASQDNIADCLTKWSKETEP
VSDGRWFNGPDFLYTSEECWLAKDIGPSKADEELRPCFVLHHMTSFKQGSIIDVSRFSKWETLLRTLALVRRFISNCQLR
IKKLPIEAVNVDERVLKSLSQSLPAIHVPLRQREYVEAENLLFRIAQAETYPDETEILLNNRDKACDKWLNLEKSSVLFK
VSPFADEHGVLRVEGRTANAMYAAFDARFPIIMPKNHPLTLLLLDHYHRNYGHANRETVVNQVRQRFEIANLRTTIDKVR
KRCQLCKIRKCKPLPPRMAPLPEQRLTPYIRPFSYVGLDYLGPLEVAVGRRREKRYVAVFTCLVVRAVHLEVAHDLTTSS
CIMAIRRFVRRRGSPVEIFSDNGTNFVGASRILADQIRRINSDCADTFTDAKTKWTFIPPGAPHMGGAWERMVRSVKEAM
RALDDGRKLDDEILLTVLAEAEGFINSRPLTYMPQESGGTEALTPNHFIFGNSSGAHNPIRTPVDLAEALRNSYKRSQYL
SDAVWDRWLKEYFPAVNKRSKWFCDAKPVKVGDLVYVAEGKRRTWVRGKVVELIANKDGRVRQVIVKTASGTFKRPVVKL
AVMEILSNGESRANHPEMPLDPRGG
>BEL-616_AA#LTR/Pao 366-5876  [Aedes aegypti]
MFLRSGKVKKVLFPSTPFSTPTGEFSVLRSVREQKEEAEQRQKEKEMAESVVALEQCCHAARSKVVRIKSAILNAEQDPE
KFTHHGLKLYLKTVDSSYEEYNNFQNRIYLTDPQRREEFEPKFVEFEELYEFVRISLCEMIQHYEDIEKAIANEAALERE
KQLLAVKFQGNAVAISDRAGSSGVPESVVPYRMPPSLLLQQTPLPTFDGKYEHWHKFKARFCDIVDRCTQDSPATKLHYL
DKALVGEAKGAIDEQTLNDNNYDGAWRILVERYENLSMVIHGHVTRLLNLKQMAKESSVELRTLIDDCTKRVESLEFHKL
KMDKMSEAIVITLLASKLDPSTRRSWEASCEHGKLPVYKDTIAFLRKHCHVLERCEQNVMPIKSKIVPMKTQPSIITSKT
HTVMISKTTDGCPVCGSAHSIDACGAFKRLNVDERYMKAKQLGLCFSCLLRGHRTVACKSGKTCPTCSKKHHALMHPEEK
KPVAVEFPQPPAAEQATSSSHPLTAAKCTIPIEPMQPKQILLATAIVMVYDSNEVAHKCRVLLDSGAMANFMSTRMAELL
RLRKEGANVPIDGVNGMKTVVKYRVNARVASRTTGFQSSLDYLVVPRVTGALPASKIDPHSWQIPKSVELADPHFYEPGR
IDMLLGAELFFEVLQKGKIKLAPNLPLLQESQLGWLVSGPVSDSAVIGTVKVCQAGKSEETDEQLCQLLRRFWTIDEFGG
DASPRPDDRCELSFQETHSRTKDGRYVVMLPFRDNVGELGESRNQAMRRFLSLERRLEGQPELKQMYVDFISEYLALGHC
RVVTDSECDRPESVYYLPHHCVIKPDSSTTKLRVVFDASAKSSSDLSLNDVMEIGPTVQESLFNVILRFRLHKFVFTADI
PKMYRQVMVHEAHRKYQRILWREDKNQPMKELELNTVTYGTAAAPFLATRSVVQLARDEQEDFPAASEAVEKCFYVDDVM
TGADTLSDARQLQRDLIALLDRGGFQLHKWCANDEALLEDIPADAREKQMNFEDCEINGVIKTLGILWDPSSDEFLFHVK
PIRDGSEFPTKRSVLSDMSKLFDPHGLLAPVVLIAKLVMQQLWQQNVGWDDAIPKEQFRIWNRFRSELCCLNSLRIDRRI
TIDDTVAVELHGFADASKVAYGCCIYMRSVKSDGAAEVRLICGKSRVAPMKELQRDIKVDATPDEMTIPRLELCAALLLA
EQVDKVRETLALTTAKVVLWSDSKIVLNWLKQMKPNTPVFVQNRVVKIRKLFAWHTWHYISTQHNPADLVSRGVFPEDLM
RCEEWWFGPSVIPVVEDDECGVVEPEEYAHQIVTTLVPERDSVIPKKQLEPYEVILKYSSYRKLQRIFGYVVRFLHNCRL
KGNKTTRRSGALNSEDYTEAQKAMVTIVQLVVYKEEISCIQANQSVKGKLRNLNPIYDDNERLLRVGGRIRNSDLPKDQK
HPMILPENNHFTEVLIEALHREHLHVGLNGLLAVVRQKFWPVNAKRTIHRVLRKCVVCFRTNPRDVQQYMGDLPSCRVTA
AQPFARTGIDFAGPFFIKVGRMRAKVKVYVCLFVCMSTKSIHLELVSSLTTDGFLAALHRFANRRGNPSELFSDNGTNFR
GADRELSELLNLLQSQVLDDKVNEFCQPRGIKWSFNPPKAPHQGGIWEANIKCMKSHLCKTLNESYLTYEELNTLLIQIE
GVLNSRPLVQLTDDPFDYEALSPGHFLVGRELTAVAEPLYDDLKETSLSRYQLVQKRMQHFWQRWSNEYVTGLQKRSKWY
KDPTLLRTGLLVIMKEDNMPPKTWKLGRIVETHPGKDGVVRVVTIRTSNSIYKRPTTQIAVLPIDDCTDQAEPKEK
>BEL-622_AA#LTR/Pao 861-6180 via tfasty with BEL-21_CQ, 5 frameshifts. [Aedes aegypti]
MPDLRSLNKLEHQLRKSLEGIENFVHNFDVKRDVRQVNVRLEALEKIYGQFVEVRMKIELLLEDALEDGEGDEETLMQEN
DKVRQDFEDSYYSLKAELMAFQSLGTSASRNSTLQAPDTQAATQFAKVKLPEIKLPSFGGKIHEWVPYRDSFRSLIHDNT
LLSDVDKFTYLRSSLSGDALQEINSIDLSAANYTVAWKALESRYENKKLIVKAHLDALFTVEALKKESYEGLNQLIGDFE
KNLQMLEKIGEKPSDWSTILAYMVCSRLDMATLRHWETHHNSKDVAKYSALMEFLKGHCSVLQSIAPSKATSSVQQRQFR
PAVCHTSSSSPRQCHFCSEPRHSVFQCVKFQRMSIPERIEAANRNKLCRNCLYPGHFARTCEKGACRQCHQKHHTLLHTE
QPRSSVPPTQSRPPTVNQQSRQPQSKPPTPNQQTRTANTANTQDSHTQPATEHATTSQTHVALPITPTQNIILSTALVSI
QDRYGRSVPARALLDSCSQHCLMTKSFASKLKLDETPVYLSIQGIGSSQAVSTRLVTAVVGPRSPNISSFAEEMSFHVLP
KLTVSLPTVSINTAAWNLPNSTLLADPNFFEMGPIDVIIGAEYYMELLKEERRRATDDGPTLQDTVFGWIVSGRIPEGPA
ASYSLVHVCSTAEIQDQLSRFWEVETCQSTSTLSVEESACEEFFDRTTYRNDEGRYVVTLPKKERLIQQLGDSRSTAIKR
FLGVERRFAMNPELKKQYAEFMREYLAMGHMREVSEEDTSAPSYYLPHHAVLKPDSTTTKLRVVFDASCKTSTGVSLNDA
LMVGPVVQDVIVDITLRFRTHRFALVGDVAKMYRMVLMNAADQRLQRIVWRDSPSESIRTFALTTVTYGTASAPYLATKC
LQRLSEKGEESHPAAAKVLKKDFYVDDMLSGVDDIEEGKRLVSQMNDLLQSAGFSLRKWNSNSKELLSAVPEGLRDERSI
LELDSSSAAVKTLGLTWEPSTDCFRFSSPAWNESTAITKRCVLSDASRLFDPLGLVGPVIIQAKIFLQDLWKHDCEWDEP
LSPQLQDQWREYRWNLTGLDGIAVPRWVGTSRSTEAVELHGFCDASNKAYGACVYVRTVAADGSVMVHLLTSKSRVAPLE
NLKKNKKSLSIPRLELSSALLLAHLYEKVAKNITVATKCRFWTDSTIVVCWLSSSPSRWKQFVANRVSEIQHITKGSVWN
HVAGEDNPADIISRGMSPAQLQYESRWFHGPKWLMSDEHYWPSSAQINESEFAKADLEEKSIVAALPDVSPSEIFGLRSS
LVDLVRLTVYIRRFKWNSSPANRSCRKVGSITSEEYEEAIRELVKLSQRESFPQEFSDLAKHGQVQDSSRISALNPQLVE
GVLCVGGRLKNAAVADSRKHPYILDHRHPFTKIVVVHYHRKYLHAGQQQMVSAVREQFWPTSVRNLARQVVHECVQCFRV
KPKIQEQLMADLPPERVRPCFPFQKVGVDYCGPFYVVYPQRRARPVKCFVAVYVCLVTKAVHLELAADLSTQAFLATLQR
FTARRGKPSLIMCDNATNFVGARRKLDELAQLFASQQFTEAVLRQTIEDRIEFRFIPARSPNFGGLWESAVKSFKTLFKR
TIGTRSLEYDNMLTVLAQAESILNSRPLTPISNDPDDFEALTPGHFLIHRPLTAIPGPDLGEVPENRLSAWQKMQDFNQR
LWKKWSEQYLSNLHNRTKWTRQRDNIGVGTMVVIKEENLPPLKWQLARVTEVHPGSDGNIRVVTVRTKDGSYQRAISKIC
VLPIRDNLSSAEGEN
>BEL-639_AA#LTR/Pao 199-6107 via tfasty with BEL-605_AA, 2 frameshifts. [Aedes aegypti]
SVKSKSSKNRDKSSAVGHSCETCRSADNSRMVQCDDCDGWHHYICVGVDDRIVKKPWRCVMCEEVWTKRKNIKHTKVEEG
KKKPKATGKTNQEGGPKDVGKAKQKRTSGAAGKLKEPFDQAAKSLKASSVKSATSRKSSRVQLELQLRKLDAERTLLEDK
RKLIEQQYSVLQELAELEDRVEDVEDGDQVDGDSKVEGWLRDGLNSDYEAESTDSSEEYPGTEDSDDEDVGNSSEDDIQE
DPRSNASHFNPKGRSTPRIDQTKSQRRNVTHSNQLACSLTRNQLAARQVVAKDLPTFTGNAEEWPIFFSTFESTTRMCGY
TNDENMIRLRNCLRGEAYAAVKSFLLHPSTVDRAIGALKLRFGQPRFVIHSLKEKILAMPPLRPDSINKMIDFALAVQNL
EATIDACGQKELMRDASLLGDLVGKLPASAKLEWARHTRCLRKVNLSAFSKWIYDMAEDACLVAEPRKNQESPQSQEPRK
KSKAFLNTHTDQPNYRKEERHAAGSNSASKPTGAYKKTPGRRGAAAPARGRPPPPGAGAGRAGGRGAAAGRPQSRPCIVC
KGGCASLAKCGRFLDLSYDGRWATIREARVCRKCLTQHKGGCESKQCGVNGCGYKHHPLLHKELNVESSAIERPQHEEQS
CNTHQSGSSSILFRYIPVVVYGCGIVVHCYAFLDDGSSKTLMDEELAKELNLSGERHPLCLKWTGGLHRTEDGSRSVQIE
ISGIKGKRYHFEDIRTVSELQLPCQTLDVQQLQSEYPYLRGVPVQSYREVRPRLLIGIQHAVATLVRKSREGKPGQPIAI
KTNLGWTIYGGAPANQSMNMVHYTNHVSFCDHEIENTNANMDRAMKEYFSLESLGIMSPAKHVRSQEDERAMSLLHKLTH
FNGERYETGLLWRKDNEQLPNNKAMALKRFNHLERRMEKDPELARVVKEKLADYVSKNYVRKLTSEELAEIHERAWYLPT
FPVINPNKPGKIRIVWDAAATTNGVSLNSALLAGPDLLEPLIRVLYRFRQYRFAICGDIREMFHQVAIRNEDQHSQRFFL
RDDEGQKEPSTYVMQVMTFGASCSPATAQFVKNMNADRFSNTHPSAARAIVRCTYVDDMLSSAETEQEAIELAKSVWFIH
NEGGFEIRNWMSNSSTVLAAIRGNSNVEKSLDLTSTLATEKVLGMWWCTKADCFTYKINWDRLGEDLLAGKRCPTKREIL
RTMMTIYDPLGLISHYLMYLKVLLQEIWRTGVGWDEKVTQESYDKWQTWLKLLPEIELLQIPRCYRLQTSTDEYTEIQLH
TFVDASENGMAAVVYLRFAEAGTVECSLVTAKTRVAPLKYLTIPRLELQAALIGARLAHSVIQALDITVARCVFWSDSRN
ALSWIRADHRRYSQFVAARVSEILDLTNAADWKWVPTKWNVADEGTKWQRRPSFTSESCWYKGPEFLLHPENEWPATPVK
FEESCEELRANIHVHYEATKLEFPVDKFSEWKRLLHTTAYMLRFTRNARPKKFSRIGGCITSEEIRDAEVFHFRTAQANK
FSEELSIMRREESKAVIPKRSPLFKLSPFIDEQGVLRMRGRTAACPYLLPDAINPIILPREHPVTHLIVRSYHVKFHHQN
HEAVINEVRQKFCISRLRRVYAKVRLDCQRCKLRDTRPRPPAMADLPPCRLTAFIRPFTHTGVDYFGPMEVCIGRRVEKR
WGVLLTCLSIRAVHIELASSLTTNSCIMALRNFIARRGTPAVFYSDRGTNFIGSERELKQTLKTVDQNRMAQEFVSSNTS
WSFNPPAAPHMGGSWERLVQSVKRTLSELKPCPRPNDEELRNALIEVEGILNARPLTHVPIEDEAAPALTPNHWLLGSSD
GLKPWSLLDNDSIALRRGWHQSQVLANHFWERWLREYLPEITRRSKWYQKVPPIQEGEIVLIADPNLPRNCWPKGRVIGT
VNRDGQVRKVTIQTMRGIYERPAVNVAVLDVKGPEELANSEAESANWGG
>BEL-632_AA#LTR/Pao 24-6011  [Aedes aegypti]
MAYKYPCCDEGEDFDASVRCERCEEWYHFCCVNVDDSVAEVVWYCGTCLGEDRDIRTSLGAPGNTAISPVVFNHPRQIEG
DRAGIGKSTRSKTKGRITRDQAQDEIVEDVEVGNSTQAEDQETIDSERKQEEEEANKDDRDAFLHALTEAFGRYCNQVKR
SESVPVKKPDRVRESVKKSASLSARVSSPESTRTRAWRELQELEEWNRLEEQEEENQRKILELERKRIARKKKVLERRSE
LRKIIDQGRKVEEFVFNEDEFPEMEAAVEFDEDLELEMFPKDVGPLQRRKNTRPPKSQLLDVRLPRPSFEEELGVRHTAF
DGECSEERGAIGRSLSRIKMPEPGPSRLQIASRQVFPRNLPKFNGAAEEWPIFISAYEQANQSCGFTNAENLVRLQEALK
GKALETVRNRLLLPENVPLIIEKLKKRFGNPEVLSTRLANRIQQLEGPKVESLESVIEFGSAVEEFTQHLKAAGLVNHLK
NPILMQSLVQKLPSYYAMEWVEYKRRAKAVDLETFGAFMECLVEKALEATFEKSEEIERSKSRDKSRTKAFVHATDGGST
QSGQKSVTEKSKSNLPPQSLRRDLKCSVCQEPGHFGRNCQELLKQDLEGRWKTVEKLKLCPLCLYDHGQRSCRIRMQCKV
EGCQECHNALLHGRRKQAARVQAQCNSHRHETRAVLFRMIPVMLYNGKKKVDTLALIDEGSSVTMIDSELAKMLGVDGPI
EPLEMTWTNGVQRTEYESKKVVLEISAINSRERYELVKAHTVHRLDLPTQKMDARXLVDEFRHLDHIDIPSYGRSVPKIM
LGIDNLHVIAPLDSRIGECGEPVAVLCKLGWAVYGQQAKVVDRVHFLGHHRCSCEECSKTDKGLDELLKQHYQLEEIGVS
PVRLESDEDRRAREILEKTTRRVGERFETGLLWKEDDVTFPESFDMALRRMRSLEARMNRNPGVRQILEKQLGDYLVKGY
AHRITEQELNETPKGKEWYLPLNYVTNPKKPGKVRLVWDAAAKAHGVSFNDMLLKGPDMITSLPAVINGFREKRIAFGGD
IKEMFHQALVRPEDRQAQRFLFPGADGEVEIYVMDVVIFGSSCSPCSAQFVKNLNAQEHAEQYPEAADAIVRKHYVDDYF
DSADTEEEAVRKASDVCRVHAKGGFEIRNWVSNSEEVLRQLGGPKCAAKPLEVDKNCPTERVLGVLWDPEGDNFVFSTEI
RQDLQAYIRENAWPTKRIALRCIASMFDPKQFLAPLLIQGRIIMQDVWRSCIGWDDKLTEEHYERWKKWTSLFHLIDEIR
VPRCYLGGLESEAYQTVQLHVFTDAGEKAYGCVAYFRFENGGVVQCAFIEAKAKVAPLQYLSIPRLELEAAILGARMMKS
ICENHSFPVLKRFLWCDSDTVVSWVKSDQRRYRPFVAYRIGEIISTTNPEDWRWVNSKSNPADDLTKWGKETEIKSSNRW
YKGPEFLYQGEENWPKQNRPRVEVAEELRASVLFHYIALPEGLMERMQHISRWSVMVRTIATMFRFVSNCRRRIQKKPIE
ALRKADGGGISSDEVPLRQEEYHAAEVLLWKAVQADEFADEVRTMLKNKELPLSEAIPLERSSSLFRLAPFLDEDGVVRM
EGRTGAAEYAAFDARFPIVLSKDHVVTKRLLEHYHRQFGHSSRETVVNEIRQRFYIPTLRVQVDKVIRGCMWCKIQKAKP
TVPRMAPLPGQRLAAKVDPFSYVGIDYFGPLDVSIGRRKEKRWVALFTCMTVRAVHLEVAYSLTTESCKMAIRRFVKRRG
SPTEIFSDNGTNFVGANRDLVREINAGCADTFTSSKTRWTFNPPSAPHMGGAWERMVRSVKEALKAFTDGRKLTDEILQT
VLVEAEYLVNSRPLTYVSTNVKEDQEALTPNHFLRGCSTLECLPSRDPVDLADTLRSSYNRAQFLTDGFWDRWQKEYLPT
LNKRTKWFVDRRQVAVGDLVFVAEGDKRSSWERGIVKEVFTGKDGRIRSANVQTSRGVKTRPVAKLAVLEIDSEE
>Helitron1_rpa2#RC/Helitron ATRPA1H2p; multiple exons [Arabidopsis]
MAERNYIPDLNLHRNNHIIYVKILSMWDLQSMIKPTPSTMILCDVKGNKIDARIPWGEYMSNFKTSLFEGKWYYLQHFRL
KRSTTIPKYTDFHYEIEFMWHTKMWAVSDRAEQSSLKFIHADEVNGESEDHVVDVIGVITTVSTVSSFPYCCPEGETDYD
ARYVIFTIRDNHERIITCVARGSACESFLSKVYRLIGSKTYNYEPITTVLRFFRTSMFKGSKALISEYGCSRVFIEEEFP
DFDVSSEPVGNVEGRIEYVAKD
>Helitron-1B_SBi_hel#RC/Helitron 5280-9628 via tfasty with Helitron-4_ZM_hel, 1 frameshift and 1 stopcodon. [Sorghum bicolor]
MLPSVPNCKHCDAKKFEGEPPGFCCRGGKIHLSSPETPPELMRLWSSSDADARHFRANIRYFNGHFSFTSLYCHLDRITT
NMRICGVYTFRAHGQIYHNIRSFGKEEGVEKRHLELYFYDDDPSLDHRMSKCREQCAQKDREVIQQLVGILEGNPYSQQL
RSMGHVENLEDYRVELNLDQRLDQRTYNVPLTSEVAAVWVEGSERHGQFEHSVLLQGKDRSIHGIRSYNACYDSLSYPLF
FPKGELGWHNCIPKVGVTMAQVERARETRKRRADNGDNDGGNFKSFKxCKVKSFLLTHDTNLNNVFYVEPVSNTCVSVRD
YYCYKFQMRPGIFNPILYGKRLFQQFAVDTYIKIESSRLDYMRMNQDTLRADLYQGLVDSMNSGEGSAENVGRRTVLSSS
FIGGPRDMRRRYMDAMALVRKYGKPDIFLTMTCNPNWDEIKNELYPGQTAQDRPDLVTRVFRAKLDAMRKMLMEKDILGK
VKAYVYVVEFQKRGLPHAHFLLIMERKYKLTCPEQYDMIISAELPNKKKYPELYKMVTKHMMHGPCGVLNPSCPCTVGRG
SCKNRYPRPFCEASTQGKDSYPIYRRRNDGRMQKVRGHYLDNQWVVPYNPCLLRTFNCHINVEACGSIKSVKYLFKYIYK
GHDRASVVMRETDKEDEKGNIDEIKQYRDARWVTPPEALWRIYGFDLSKNHPPVQQLQLHLPDMHMVAFHKRDKVERIVN
RPGVEESMFTAYFEANKNHEEARGILYRDFPEHFTWQSDGKFWQKRKNSVFQVGRVISAHPAEGERYFLRVLLNNVAGAT
SYEHLRTVDGILLPSFREAAERRGLIEEDNTLDECLTEATLFQMPSSLRRLFATILVFCEPHDVMGLWKKHYDAMSEDYS
RNNPSPDLVQQMVLIDIRNMLQSMGKDIKAFPLPDIDHSYDDASHIPREIFEEASIEQNPKDVLLCDSLNTEQRSAYDEI
MAAVCSKQGGLFFVDGPGGTGKTFLYRALIAKLRSQDKLVVATATSGVAASIMPGGRTAHSRFKIPLTLQEGGCCTFTKQ
SGTAKLLQQAALIIWDEASMTKRQNVEALDNSLRDIMGRSHLPFGGKTVVLGGDFRQVLPVVRKGSRAQIVGASLRRSYL
WESVRHLKLVRNMRAQSDPWFADYLLRIGGGTEEVNGDGNVRIPDEICVLYSGDAEKDLHTLIDIIFPDLNKNMADKDYI
TTRAILSTRNDWVDMINMKMIDMFQGGETVYHSFDSAVDDPHNYYPSEFLNSLTPNGLPPHVLKLKLGCPVILLRNIDPA
NGLCNGTRLVVRGFRRNTIDAEIVVGQHAGKRVFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTVNKSQGQTIPNVGV
YLPAPVFSHGQLYVAMSRATSRTNIKILALPPDGDAQEEKAKKMDKKNAKRNAEEKKPKNTSNKKDKDKKIPTTDGIFTK
NIVFKEVLTP
>Helitron-1_SBi_hel#RC/Helitron 2275-6622 via tfasty with Helitron-4_ZM_hel, 1 frameshift. [Sorghum bicolor]
MLPSVPNCKHCNAKKFDGEPPGFCCRGGKIHLSSPETPPELMRLWSSSDADARHFRANIRYFNGHFSFTSLYCHLDRITT
NMRICGVYTFRAHGQIYHNIRSFGKEEGVEKRHLELYFYDDDPSLEHRMSKCREQCAQKDREVIQQLVGILEGNPYSQQL
RSMGHVENLEDYRVELNLDQRLDQRTYNVPLTSEVAAVWVEGSERHGQFEHSVLLQGKDRSIHGIRSYNACYDSLSYPLF
FPKGELGWHNCIPKVGXTMAQVDRARATRKRRAENGDDDGGXLXSFQXCKVNSFCXLMIQFEQCLPVEPVSNTCVSVRDY
YCYKFQMRPGIFNPILYGRRLFQQFAVDTYIKIESSRLDYMRNNQDTLRADLYQGLVDSMHSGEGSAENVGRRTVLSSSF
IGGPRDMRRRYMDAMALVRKYGKPDIFLTMTCNPNWDEIKNELYPGQTPQDRPDLVTRVFRAKLDAMRKMLMEKDILGKV
KAYVYVVEFQKRXLPHAHFLLIMERKYKLTCPEQYDMIISAELPNKKKYPELYKMVTKHMMHGPCGTLNPSCPCTAGRGS
CKNRYPRPFCEATSQGKDSYPIYRRRNDGRMLKVRGHYLDNQWVVPYNPCLLRTFNCHINVEACGSIKSVKYLFKYIYKG
HDRASVVMRETDKEDGKGNIDEIKQYRDARWVTPPEALWRIYGFDLSKNHPPVQQLQLHLPDMHMVAFHKRDKVEKIVNR
PGVEESMLTAYFDANRHDEEARGILYRDFPEHFTWQSDGKFWQKRKNSVFQIGRVISAHPAEGERYFLRVLLNNVAGATS
YEHLRTVDGVLLPSFREAAERRGLIEEDNTLDECLXEATLFQMPXSLRRLFATILVFCEPHDVMGLWXKHYDAMSEDYSR
NNPSPDLVQQMVLIDIRNMLQSMGKDIRSFPLPDIDHSYDDASHXPREIFEEASVEQNPXDVLLCDSLNAEQRSAYDEIM
AAVYSKQGGLFFVDGPGGTGKTFLYRALLAKLRSQDKLAVATATSGVAAAIMPGGRTAHSRFKIPLTLQEGGCCSFTKQS
GTAKLLQQAALIIWDEASMTKRQNXEALDNSLRDIMGRSHLPFGGKTVVLGGDFRQVLPVVRKGSRAQIVGASLRRSYLW
ESVRHLKLVRNMRAQSDPWFADYLLRIGGGTEEVNGDGNVRIPDEICIPYSGDAEKDLHSLIDXIFPNLNANMADKDYIT
TRAILSTRNDWVDMINMKMIDMFQGGETVYHSFDXAVDDPHNYYPSEFLNSLTPNGLPPHVLKLKLGCPVILLRNIDPAN
GLCNGTRLVVRGFRRNTIDAEIVXGQHAGKRVFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTVNKSQGQTIPNVGVY
LPAPVFSHGQLYVAMSRATSRTNIKILALPPDAEAQEEEAKNMEKKNAKKNTVGKKPKNALNKKDKDKKTPTTDGTFTKN
IVYKEVLTP
>Helmet3_hel#RC/Helitron 101-5728 (7 introns via genscan; 2 frameshifts needed to be introduced) [Medicago truncatula]
MAIDSCGMVEEDEVPTKVHDAEQRDKHKLGFTQVVYLPMECNENGEVSDIPENNYDVEGNIAETVDDGLSFLHHEDFEAE
CYQNNEGEDISDNEYDYFQVGEPRFVCESCGALMWYEERVGKHRDTSNPEFSLCCMQGRIEIAPFKRLPRQLYDLYHEND
KKSKFFMENIRSFNSMFAFTSMGATIDKTKNDGNAPPVFVLNGENYHQIGSLLPKEGDQPKFAQLYIYDTDNELSNRMAA
VGQVRDTLTQEDAPHIKLRILGKRGYDGRRYNMPTASEVAALVVRGLRCRRLRKRISVFETSYLPLQYPLIFSRGEDGFR
RDIKFLDRPTKKPIQRTYVSMKEWFAYKIQQRDILQSHLLWSRRLFQQFLVDAYSMIESWRLKWYRDHQKEVRADLYKGL
AEAVLRGETSPATAGKRVVLPSKFVGGARYMIQNYQDAMAICGWVGYPDLFITFTCNHKWPELLEFLKKHNLKPEDRPDL
VSRLFKIKLDHLIKEIKKGKIFGKVKAVIYIIEFQKRGLPHAHILVFLRAEFRCLHPNQIDKIISAEIPDKNRDPKLYEI
VASLMIHGPCGPQNKSSPCILIKKCTKYFPKKFVDNTVIDSDGYPVYRRRDNGVFIKKKGESFVDNRWVVPYNRKLMLKY
NAHINVEWCNQSRSIKYLFKYVNKGHDRVTATFYQGGDACYDEIKMYYDCRYLSACEAVWRIFSFDINYREPSVERLNFH
LEGEEPVVFEDHEDIADVIKKPHIRDTKFIAWFEANQKYPEARDLTYGPLCYDDIYTVGGVKYNSFKEACFALGLLDDDK
EFVDAINQASFWGTASYMRRLFVQLLVTNQFAQPEVVWSKTWQNLSDDMLHRQRRASQVIFENHADLVLDDDQLKNYTLA
EIDRLLRSHGKSMKEDYPTMPRTDISLIHESRNRLIYDELNYNQQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDNLPGI
FFLYGYGGTGKTFILRALSSAVRSRKEIVLTVASSGIAALLIPGGRTAHSRFGIPIIVDEISTCGIHPKSPLAKLVCKAK
LIIWDEAPMMHKHCFEALDRSLRDILRVQKQWPNSIPFGGKVVVLGGDFRQILPVIPKANRQEIVNASINSSYLWPFCEV
LTLSTNMRLLHGSSSSDIEERNQFSEWVLGIGDGSIGDANDEAIDIEIPDDLLIQSSGDHIASIVDTIYPSLLDERHDPS
YFQDRAILTPKNATVEEIKDYVMSLIPGEEKTYLSCDSTLSTNSAASRPDDIHTREFLNTINASGIPNHKIKLKVGVPVM
LLRNLDPTAGLCNGTRLIITKMGRYVLEGKVITGSNIGDTVYIPRLSLTPSDTRIPFKFQRRQFPISVSFAITINKSQGQ
SLQKVGIYLPQPVFSYGQLYVAVSRVTSRNGLKLLLIDEDNNCINTTSNVVYHEVFRNL
>GB:AAA92250 ORF C (Gypsy_Ty3-element) [Autographa californica nucleopolyhedrovirus]
MSQHNKVLEQLTLNQIRVNATLELLLQKEAYRDYSLIKFAKFAQILGIITNNVEDLMLEIIRLENMMAFIRASSTHHSMI
DIEALQSMIDRLKSLYTPNQILNLELREYYSLIKPGSYFIDKRIVIVYNFPIVSQDTYDLYKLSIVPNKRQLALIPSSPY
IATDEKSFVYIEAECPKYSSTYLCEKKTGQQIQSKPDCIQKLIVHQSLENTCQFTKISLIKEAVEKLDDQHYVLSLPEPT
KVQLACGRKDFNTLQGSYLVTIPMGCYLQTPELTIINDDNAIKGQPLKLAKIPYDEMNLTAVSTHINFSSIDLEDLHSIQ
TKFMLGKPIDIEEIQPTALYHTTIPLYVILLGAILFFTLRLIRKYKCWRLKSEDKEKQSSLEIHTYEDVKKNTRKRDDFP
ATFSLNMVKNSC
>GB:BAA84460 orf4 (gypsy__Ty3-element) [Oryza sativa]gi|5902447|dbj|BAA84460.1| orf4 [Oryza sativa (japonica cultivar-group)] (RIRE2) (Gypsy_Ty3-family)
MKSDPPITQRRSPRQHTVQGGGGPTIRSDPQPQTSNPTGQTGFRKRKLVLNDDEGDDGNKSGNKGSPNKLPKHTTPRKKL
ASRPMPKIRTSSRYKPLGTISLRHASLMEIILNIERTLCRKPSDIDPTGKDPDPAVTEPSSSKDSEPTAESQPTGAHTSG
DKADPSDQPPTGNQSAATETTTTQEPPTGNQSDVGPDQEIPEVEAQTTTSQGPEAGNDSMIGSPDKEQGSPHAQLGTSSG
NSSSQVMPI
>Helitron-1_NV#RC/Helitron 312-7487 [Nematostella vectensis]
MYSIPFVFSTRHNLLCICHVGISKEYFRFWGALCGLFANKSSIASLALLHKTSPYGRMVSFNSLRGTNKPRNGAQNLLRE
SIEFLREANKPRNGAQNVLRHTEYSLRGTSNHSNVILTVLRHTENFLRETNNHSNVTERHYNGKYCGNQFVNKSIFGIPV
YMLLYLSDKTGQTNHIFSTVYNDRSNLVDEFTSKTSNNSITNAFEKTMPSIENKHDNNKHASCPSIKISKCIENHRHSRI
CSKQLNHKCRDREPSRISLKKVMRLLRYRKLRKRHKKMIIKGTPVSSVFYRIATNYNYWKLKYINRLNSFYSSFFRATCK
TSVRYNGCKQTLLLSGDIELNPGPVTDNNNIEDICLYSNGDFTLRYRMLRHGLTPLDVGGGGDCFFKSVSHQLYGNSNKH
AEIRALGVRYLKDNPERFIESIIDSSWSQYLTNMSLQGTWANHIIIQAVADAMSLKIHIIESDSNIREVTLVEPANTIIN
NIRTIYIGHIGQVHYVSTCSVSHQQSSNNIDRENTISSRPEKRKQASTSKSSNSNETKKQDRATYIRQYMKEYRQSKQNN
TSPEKKSKRNEYQRNYREMNASPEKKLKCNEYLRKYREINSSPEKKLKCNEYLRKYREMNASPEKKSKRNEYQRKNREMN
ASPEKKSKRNEYQRKYRANSSIEFAIKRFHEIVNQGPLYICICCDQLWYKHSVSSTTKLRQSNPDVVKYLSNKISVGNKE
WVCRTCSNYLQKNKVPPCAVANGMAFPDKPDFFDLNELECRLLAPRIAFQKLMQAPRGRQLKIHGNIVNVPADVTHTVSI
LPRLQNQTATIKVNLKRMLKYKSSALSLNVRPYKVLQAANWLITHSSLYRDEGIVLNNDWINQYNRADNDEINEKVQSDT
IDETDDNDIDSEGLDQNESHEDEAETIAGVTDTMFTATDFLEDNERQNILNIAPGEGNRPLSVFRDKYCEELAYPGIFLG
QPRIDNKQRLVDINYSDICKSELRRSDRRAAVCIENIFYKTKKLQMKILLGKSHIALRKCKGNNKNITAGQLKQQGSIDR
LIRHDDGYKFLNALRGSPPYFEKAKKDLFAMIRQLGPATLFCSFSSAETQWMHLLRILGQLVDNKEYTDEQIDNFNWDDR
CRLIQSDPVTCARHFDYQVNQFLTNFLFSSAQPLGKISDWFYRVEYQQRGSPHIHMLMWLEDAPQFQIDSDEDVTSFIDK
IITCQKPVDNADLLVLVNRQVHRHSHTCRKNTSSKCRFNYPQPPMKQTMIIYPLDEDTPEKEIKIYRDNWKAIQVYLDES
KEGEDITFDQLLVNLNITKQNYLLAVSSSINTPTVFLKRNPNELRINNYNPDCLSAWRANMDIQFVLDVYACAVYIVNYI
SKGQKGMSELLREACTEARQGNKTIKQQVRDIGSKFLNNVEISAQEAVYIVLQLPMRKSSRQIIFINTSPPNERVDLLKP
MDNINEMDDDSEEIYTSGLLKRYSKRPLKLENITLADWAAWYDCAGKPYVKQTNQVDVDGLPLENFVDDNLNDDDDTEAQ
KTPRSKTKKRAKARIIRSVWFNKEAEPEKHYRELLMLFTPWRNEETDILGTFSSYEERYMLLANVINEQMKQYAVCNEDF
NEIQQDMNRLEDRFDEIAPCTQNLEQQDRAEGDQDLHPDFTGNYNLSDDLGIPSVDNTETLIMNELPDDEYRCMVQTLNK
EQKEFFYHVLHLIKTSGEAFYCFLSGGAGVGKSHVTKALYQAALKYYNTRPGVNFAETKILMLAPTGKAAYNIKGNTIHS
ALAVPACQSLKNYKKLDSSRLNTLRCQIGGLKLIFVDEISMVGNTMFNVQFNNRLKDIKGSSLPFGGVSIVAIGDLFQLQ
PVMDGYIFKDMDNDEYGVLAPNVWQELFKMFELKEIMRQRESKDFAELLNRLREGNHTKEDIIKLKERILNHTSAQYPKD
APHLFIQNAKVNDFNYKAHNALQGPKYSIKAHDTVIGTDSEELRDKILKQIPKDPRKTKQLHSVLHLAIGERTEISLNTR
NDDGMTNGAGSVIKFMQIHKTDKPSGIIWVQFDHADVGQKTRHDNRQLYVNDIEPTWTPIKPISTQFAVGRTRSVHVMRK
QFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYVGLSRVTTIDGLYITDLCESKIAVNTDVQTEMHRLRTEGKLS
LSVSPIYEAPQASIKICFLNARSLHKHIDDIRHDLNYSSTDVNIFSETRFFQHENDDSYLLDDKNYTLFRNDGTPRQNVR
PYGGTAVYSRLDYYPGYPFCSNIHGVEITILRFMIIPHITIVGVYSSPTVSITELCNAMKETLDSLPTQINIFIGDFNVN
WFSESRRASLYNFFITQNCYRQLVSCSTTDSKTCIDHIYTNLPEVQTSFQILETYFSDHKAICVLINSFIN
>Helitron3_hel#RC/Helitron ATHEL3p multiple exons [Arabidopsis]
MTDTNYIPDMNLHRKNHVLYVKILSIWDHHSIICGTPATMILCDVKDFRLKRATSISKYSDYVYEIEFMWHTKMWPISDR
SDESSLQFIHADEVESESEDYPSEAHTNWTMSKKHTSNNENIDSSSNPPKKKQIQSLMFQSIRMSQWNSPSSHGYVPFSS
VLNTVQRDVSNTSQLHNSPNVRGEVSTPNISARRRQTSKGMPLGSHIPSTYPMSSISKQTINDSECLTQEQSSCVNTSIL
NMPRKSLHIDFARVSSESNVEVKLSSTTADHTSRDEEMYDEMNGINLNEEEELEQNYDISSGEDVGSPIRIQRMDLDEAQ
DMGTCPSVLSNEAISTEQASHDSIGQKSKESESLKIKKTRRRTTKSIPLKSPELVKELLTDDDAQGRNYRKHAWIYNMVF
AMTSIGGKVDKSMPKGQGPIMFRLQGAIGRKEKDQRTYIRPTTSEVAELIPGDFENGMPDLDIVIQEKITVEFQKRGLPH
AHILLFMDSKSKLPTADDIDKMISAEIPDKEKEPELYEVIKKCMIHGPCGAANKNSPCMVDGKCSKNYPKKFEEITKTNE
NVNGIAAGEEPLPTKKKKDEIKDYFDCRYVSASEAVWRIFKFPIQHRSTPVQHLSFHVEGKQPAFFKGKESIKEVLERIA
NQDSQFMAWLTLNRNDVVGKNRKRARDLLYVDIPAYFTWDRINKMWNKRSCGFSLGRRNYVPRKLEDEYFLSVLLNIVRG
PTCFAHIKTYNGVVYPTYKTVSFARGILDDDQVYIDSLVDASQFCFELELTEAEIKNYTLQEIEKIMLFNGGTITEIENF
PQPTRECIDNSNRLIVDEMRYDRQYLTGKHAEWIDMLTPEKRGVYDEITGAVFKDLGGVFFVYGFGGTRKTFIWKTLSAA
IRSRGDIVLNVASNGIASLLLEGGRTAHSRFSIPLTPDEYTSCRIKPKSDLANLIRKASLIIWDEAPVMSKWCFESLDKS
FSDIIGNKDNKDHCKVLKLTKNMRLLSKDLSEEEAKDIKEFSDWLLAVGNPIEAISHEIYGDPAMLKVNEDQKFFLKRVI
LSPTNDDVHTINQYMLNNMEGEERIFLSADSIDPSDSDSLKNPVITPDLLNSIKLSGLPHHELRLKIGAPIILLRNLDPK
GGLCNGTRLQITQMTIQVLQAKVIIGDRSGDIVLIPLINITPSNMKLPFRMRRRQFPVSLAFAMTINKSQ
>Helitron2_PPa_hel#RC/Helitron 828-5109 via genewise with Helitron-3_ZM_hel, 1 intron (4232:4332), 1 frameshift and 5 stopcodons. (The quality of the related Helitron3_PPa ORF is too low to include).  [Physcomitrella patens]
MNVLCPHCNALHWFDEHLARSPRKLPLFGQCCRQGKVSLPSLPSPPLLLRCLFEDQDARAREFRENIRQYNVAHAFTSLG
ANIDRSVLQRNAPYNFRINRELRHLAGALLPEEGIDPTYAQLYIHDASFAQDRRMRRNRGLLSQTMxKIGEVLKENNPFI
GLYRQAHEILSQARNEGVVEVDLVVSLHFMNESDRRRYNLSTTFEEIAIILLGDGSEHNALRDIIICLRSNGLLERIHEA
HLTYLPLHYVLFFPHRTLGWHLDLRAQNVVMDIVEEREGAGREDWRGNNLTQMDYFAYRLFLRPTKYSTILHGRKLLQEF
MVDGWAATKQSRLRYLRYNQGNLRADLYQGLVDAVVTHQSIGHEEGRYELNNLGRKILLPSSHIRSARHMIEILQDSMAI
TRFYQHLDIFMTVTANPRWSKIQNELLQGQRASDRPDLVARVFELKRRAIMEDIKKGVVFGHVVAHVYTIEFQKRGLPHM
HILIFLDRESKIRCAGDVDRMVFAEFLDKDNDRELFEVILQCMVHGPCRMQNPQAPCMEDGRCTKRYPKVFVEETTMDAD
GYPQYRRRNDRRTFEVRGMVVDNRDVVPFCPKLSQKYNCHINVEVCASICAVKYIHKYIYKGHDRITMQFENQQDEIKQY
LDARYIGAPEAAWRLFGMRIHEEMPNIVCLAVHLLRMHQVVYDPNDEAAAILERAERQKTTLTSFFETCAAIAVARQYTY
QXFLQHFVWHKTRRTWTLKKYGFAIERLYFVNPAMEERYYLRLLLIHVKDPQSFEHLKTIHGIFHPTFKSACAALGLLED
DREWQQCLEEASRIQIGSQLRALFVILLLHENLLNPLNLWKRFXKSILDDLNARLQRKHGISNPIEEQIKDFGLFLLDKI
LQDSDRMLAQFLPMPLPRNNWNAIVNGNRFIAEERAWDIQQLEANLEQYVPQLNLEQRKAYDDIVASIMEEHGCMFFLNG
PAGTGKTFVYNTLATKVXLMQKIVICVASSRIAALLLEGGRTAHSTFKILLDCNEDSFCSITKNFDHAEFICQTSLIIWD
ELPMQHRYCLEAVDRSFRDIRDIDRPFGGATIVFGGDFCQILPVIVKGTREEIVAASFXRSTLWPQIKIHTLKENMRLNS
RALQADIEFANWLLQIENGTNLLPDNVVTLLDHMIVDQQLMSLVDVVYLRLAEDGVANDAFFRDRIILSARNDDVEDINE
KIMAIFSREEQEYLSADEVVVEDGIDNNNVYPVEFIKSLNPSGMPRSRLCLKIETPVMLLRNIAPRQGLCNGIRLIITRL
MDRVLEARILRGKFAGNLVFIPRITLTSTTKELPFILKRKQFPIRLAFAITINKSQGQSVKHVGLDLRQPIFFHGQLYVA
LSRCTSSRSIKILLPRNDNLNSTLNIIFPKVLIR
>Helitron4_rpa3#RC/Helitron ATRPA4H3p; multiple exons [Arabidopsis]
MERMNLLSDIGVHSTKWSVYVKILGLCHHNPPRDGVVTTMMLIDSKYNRIDATIQEGIIQWKYKDVLKEGFWYYMSDFRV
VVNTMPVRYSFCSKQIKFLRGTNMWHVPSLSTSRFFEFVAPIDVKNAAPQDMEFLSDAMGIITRVSNIRRFPFVCRQRET
DYEARYVKFTIADNMGKKIRCIAVGKMCKNVLLSEFGFSKLYIDPKFEEIDIPTCLRGYMIEDDEDDVMMEVVEEN
>Helitron-1_EPa#RC/Helitron 2521-7239 via genewise with Helitron2_hel, 5 introns (2960:3045, 3991:4060, 4671:4761, 5434:5504, 6558:6652) [Eutrema parvulum]
YIDEGDPTYTCRHCSAIMWYNERLNRSKASRNPXFTLCCLQGQVTLPLLREPPDLLKKLLGGNDSLSKHFQKNIRATDMA
FSFTSLGGKVSRSVKKGKGPQMITIQGENYHLIGGLIPPSGHDPKFSQLYIVDTENEVENIISALSKSNEARQQKKNEIS
KKEVIDAIIKMLDAVNPYVEKFRTARERFASTPGRMFHMRIVSDRPTDGRTYNTPTASEVAALIPGDFQLGMDKRDIILQ
MQTGKLRRISEIHPSYLAFQYPLIFSYGEDGYRLDIKKGNTKXSKNAKKDSISMRQFFAYRIQERKNEGQNLLYFRRLFQ
QFLVDAFTMVETNRLRYLRKNQSXLRSDSYDSIKQSENAGISDLGEQGNQFLLPASFVGGPRYMKNNYLDAMAICKHFGF
PDLFITFTCNPKWPEITRYLKERNLKQEDRPDIICRIFKIKLESMMIDLRKKHLLGKQFHVTMYTIEFQKRGLPHAHILL
FMDASSKMPTPSDIDKMISAEVPNKNEDPELYEVIKDMMIHGPCGAANMNAPCMENGKCSKLYPKDYNEETYINKEGFPV
YRRREQSDHFVEKNGFKFDNRYVIPYNRRLSIRYRAHVNVEWCNQAGSIKYLFKYITKGQDRVAVVVEPSQNVGSNIGSS
KxNEVIAQRNAQPNTNEIKDFFDCRYVSACEATWRLFKYPIHYRSTSVVKLSYHLPGKHVVIFDKKDKVEKVMSRKLIEN
TIFLAWFELNKSDAFAATKRYAEIPNYYTFDKKKKVFKRRQQGFSVGRINYAPRKIEDVYYXRILLNHVVGPKCFDDIKK
HNGVVYPGYKEACYARGLLEDDQEYIDDLXEKVFQVLQVFVVMLMSDSLSKPEVVWENTWQILSEDIEYNRRRYLDRPGY
VLLFSCFYLKKNCLQEIEKIMRSNGTSLSFYKSMPTDFRDGTHIGNVLIFDETNYNRDDLKASHDKDITMLTDEQKNVYD
EIIGAVLGKKGGVFFVYGFGGTGKTFLWRIISAAIRSRGDIVLNVASSGIASLLLPGGRTAHSRFGIPINPDEFSTCHMT
HGTDLTALVKKADLIIWDEAPMMSRHCFESLDRSLNDLFGNKSNKLFSGKVVVFGGDFRQVLPVIHGAGRADIVLASLNQ
SYIWDHCKVLKLTKNMRLLNNDLAPxESKELEEFSNWILDVGEGKIAEPNDGEALIDIPEEFLITEXNTPIEAISTEIYG
DADSLKEYKDPKFFQERAILCPTNDDVNRINDHMLDKLSGAERIYLSSDSIDPSDTISLNNDALGPEFLNQIKASGLPNH
SLRLKIGCPVMLLRNIDHVGGLMNGTRLLITQMADFMVEARVITGDKVGVKVLIPRLLITPSDLRLPFKMRRRQLPLSVA
FAITINKSQGQSLSQVGLFLPRPVFSHGQLYVALSRVTSKKGLKILIVDKEGKPQKKTMNVVFKEIFTNLTAEKS
>Helitron-1_AC_hel#RC/Helitron 2945-7687  [Anolis carolinensis]
MQERATKSRPTKTPEQLQARLQQKREKARASRAVETPEQRQARLAAMKERASITRPTETPQHRQARLQQKREKARACTTA
ETPEQRHATLRVKQERASRSIALETPEQRQARLGVMKERASTSRGAETSEQRQARLAAMKERASITRATETPQHRQARLQ
QKRENARASTTAETPEYCQARLGAMQERASTSRATDTPEQHNARLQAIREKITATRKEKHSNFLLEGFHYDPHKDYDQYS
NVIIGQMDQICSYCHAKKFKMEPPGLCCKSGKVALPPLQQPPDELLSYMSGSTSESKHFLQNIRRNNSCFQMTSFGTTSV
VGERSFPTTFRVQGQVYHTAGSMMPLPDQSPKFLQIFFMGDDQLEADQRCHYIPDVRRDIVLNLQRMFHQHNHIINTFKT
ALERMPTDEYRVVIRADKKPVGEHEHRFNAPQTNEVAIVISGDEFDQRDIIIQRRSNSLQRIAETHRWYDALQYPLIFWQ
GEDGYHFNIMQINPTSGAPTNKKVSAMDYYAYRIMIRSHERLLFIRQNQKKLRVDEYIHLRDAVSNDRSVDNIGQMVILP
ATFTGSPRHMHKYAQDGMTYVRSYGCPDLFITFTCNPSWSEIKEELLFGQTPSDCHDLIERVFKQKQIKLINVINKSHVF
GETRCWLYSIEWQKRGLPHSHNLIWLKDKIHPTDIDNVISAEFPNPSEDPSLYAVVTKNMIHGPCGNFNMNAPCMKEGKC
SKKYPRQLVTDTQTGHDGYPLYRRRAPSDGGFTAKLKIRGKTEVEVDNRWVVPYSPLLSKMFQAHINVEYCNSIKSIKYI
CKYVNKGSDMAVFGLTNENRNDEVSQYQLGRYISSNEAVWRIFSFPIHERHPTVVHLSVHLENGQRVYFTRDNAETVAAE
PPNTTLTAFFQLCQQDLFARTLLYPEVPKYYTWNASRKVFSKRKQGMSVSGHDAVASEALGRVYTIHPNNAECFFLRILL
HTVRGPTSFAFLKTVNGEVCNTFREACQKLGLLEDDQHWNFTLSEAALQSSPAQIRNLFAIILTTCYPSNPNGLWEKHRE
SMGEDILAKLQRDNPTMHLTFSPEIFNEALILLENRCLAISNKTLQQLGVQPPERNNHDVFNNELLREKNYNTEELLIFV
QSRKPLLNHDQRKVYDTIMDHIRSQKGGILFLDAPGGTGKTFLINLVLAEIRASRDVALALASSGIASTLMDGGRTAHAA
LKLPLNIANEQHPTCNISKTSGQAQVLKICKVIVWDECTMAHKKSLEALDRTLQDLRGNNELMGGALVLLAGDFRQTLPV
IPKSTPADELNACLKASVLWRHVKKMTLQTNLRVQLQGDANAQPFAEKLLQIGEGTFPTDLTLGEIHFPHDFCTIVTSVG
ELIDKVYPNISENFKQHTWLCERAILAAKNDAVHEINKHIQDMIPGSVTEYKSIDTVVDADEAVNYPTEFLNSLNPPGMP
SHRLPLKVGSPIMLLRNLEPPRLCNGTRLCIKTLLPNVIEATILTGKGQGEDVFIPRIPLIPSDLPFRFKRLQFPVRLAF
GITINKAQGQSIKYCGINLQSPCFSHGQLYVACSRVGSPNNLFVYAPGGKTKNVVYKQVLQ
>HIV1_vif#LTR/Lenti gi|9629361|ref|NP_057851.1| Vif [Human immunodeficiency virus 1]
MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWH
LGQGVSIEWRKKRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIK
PPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH
>Gypsy-30_NV#LTR/Gypsy 167-3703 via tfasty with Gyps1, 4 stopcodons. [Nematostella vectensis]
MATYQIPAPEGMNCNGDVSSNWKIFREAYEDYLIATGLDEKAKRLQVATLKSLMGTECKKILKRLQLSVAEMEDPGVILR
KLEEHFVPVRNILYERYIFHNTEQLAHESIDQFLIKLRQLAEPCLFGTLEDEMVRDRLVLGxGDDLCRGPLAVxVSASLG
xASGLLVLPxKPAMQPTSTKLKLYDDSIVPTLGECDLVCCYNGEEHKLNFKIVRGTQNPLLSGETCTNMQLITVHVVNNI
CTPQKTAPQDIFTEYQDVFQGLGCLPGEYHLEVDKDVQPVKHTPRRVAIPLKAELKAHIADLEKMEVLKKVTEPTDWISS
QVVVRKGSKLRLCIDPKDLNKALKRSHYPMPTIEDILPELAKAKVFSVADAKNGFWQVKLDEDSSFLTTFWTPFGRYRWL
RMPFGIATAPEEYQRRQHEVLEGLQGIYVVADDILITGQGETEEEALRDHDSNLVALLERARQVNLKLNPKKLKLRLPEV
PYIGHLLTPGGVKPDPEKVRAVQEMPRPDGKSKAEKIKAVQRFLGFVNYLAKFVPHLADESEQLRRLTDKEAEWAWEQHH
QDAFDRIKNLVANHPVLRYYDVSKPVTIQCDSSETGLGAALLQDDQPVAFASRTLTPTERGYAQIEKECLAIVFACERFN
QYIYGRESVHVQSDHKPLEAIFPKPLTSAPKRLQGMLLRLQKFNLDVRYKKGVEMYLADTLSRAPLPEVGPAKNSLRPEH
EDVCRLDIEQVNPTEFLRVSDDGLKRIQKETECDEKLQRLKETVLQGWPETKQEADPRVAEYWTYRDEISVYNGVLYKGE
RVIVPSSLRKTLMSRVHASHQGEQACLRRARDALFWPGMSQQIRDLVSSCSLCADHAPAQAKEPLMTPELPKRPWSIVAQ
DLYTLNGKDFLITVDAYSGFWEVDELTQATAANVINKTKQHFARYGIPDRVYSDNGPQFANAEYTTFASSWKFEHQTSSP
YHSQSNGLIEAAVKSAKNLQKKANKSGRDVWMSFLDHRNTPTEGMDSSPVQRLMSKRTKTTLPLAQHLLEPELQQDVTEK
LTLKRKKAKKHFDRGSKELPELNIGEPVRMTSLPKETKKWKKGVCIGKVAPRSYLVDIDGSIYRRNRKFIRNTKDHAEEL
VRESLPMQHPQPVSVELDTGSTDENHLPTPPEVNPEVTQPPLRTTRSGRIIKPPVRLDL
>Gypsy-29_ST#LTR/Gypsy 59-4485 via tfasty with Gypsy-22_ST, 1 frameshift. [Solanum tuberosum]
MVNTRSSTSQSQEDVPNVETLAQQLSAIASKLNTIDSLAADVAXLKAQTSRTQQEETSHRTRNRGKSANVWQEEEEDIDN
TGWPRNPPRRPYTKMDFPRFEGGDPRGWILKAEKYFCYYQTPDEHKVDIAAMYLEGDALDLFSWINRERTLLYWEELVKA
LQENYGPAEFQNPDEHLCSIRQTGSIQEYRQEFAKRSSRVTDWPDHCLLGVFMNGLKEELKSDVRIHKPRTVYKAMSLAM
EFEKKVSPNRGNKSQWSNLSRSNTIQTGSARDVPYQSVGNQHVSRTNPNSAQMSPRPSPNRAWETERRNRMAKGLCFRCN
EKFAPGHRCKTASLTLMEANDNIEGGESGEQMSSDIIDGDAGTNDLAEISFHAFLGNTAGATMKLQGTLNGRKVLLLVDS
GSSHNFISEKIVEELQLPAQVVPYFGVQIGNGDIIRCNNVCAKILLWKFPGLTIDQDFYPFSVGGADLVLGIKWLASLNT
VQANWNEMFLIFNLNGKRYKLQGVPQESNAPVAFQYFSKEADTSGNSLPIDIQSLLHKFESIFEEPNALPPFRQHIHSIP
LIPNSRPPNIRPYRYPYFQKSEIEKQVSELLQKGFIRSSTSPFASPVLLVKKKDNTWRMCVDYRGLNQITIPDKYPIPNI
DELLDELHGATIFSKIDLRSGYHQIRVDPADVHKTAFRTHSGHYEFTVMPFGLTNAPSTFQCAMNDLFRPHLRKFVLVFF
DDILVYSQTFEQHISHLELALQLLRDNCYYAKTSKCSFGQVHISFLGHVISEKGVGVDRDKVQAVLEWPVPINVKELRGF
LGLTGYYRRFVKGYGMMARPLTELTKKNAFQWSNSAENAFQLLKQALTTVPVLQLPDFTQPFAVECDASSEGIGAILLQD
DHPIAYFSKGLSFSSRLKSTYDRELLALVLALQKWKHYLLGHHFYVRTDHCSLKYLLSQRITTNEQQRLLMKLLPFDFTI
VYKAGKDNLGADSLSRRPLNAEFLALAIPVPMDFSDWQNALQADTYTREIIQAIHHDPSLQPDFHLVDQKLYFKERLVVP
DQSSIRQKLLSESHDTPSAGHGGYLKTLKRLSSNFFWPRMKHDVKIFVQNCLVCQQAKYQALAPAGLLQPLPIPERIWED
VSLDFIVGLPKSGGFDTILVVVDRLSKYSHFIPLSHPYTAKIVAKVFCREIVRLHGIPRSILSDRDVIFLSAFWQELFRL
SQTRLRMGTSYHPQSDGQTEVVNRCLESYLRCFVMEQPHTWSQYLPWAEFSFNTGFHSSTETTPFKVVYGRDPPSISPFV
HGETRIAELEEQLLNRDAMLKILKDNLLKAQTRMKQQANSHRRDVTFQVGDSVFLRVQPYRQRSLAHRRCEKLSPRFFGP
YKIVRCVGPVAYELELPASSKVHPIFHVSLLRPAHGRQAVIPPAPLPLNEDWELTVSPAKILAHRWVKEAGSSSLELLIH
WVDRPLEEASWENYDLIADQFPSFRLEDKATFQGGC
>Gypsy-31_AMi#LTR/Gypsy 45-4145 via tfasty with Gypsy-169_DR, 3 frameshifts and 4 stopcodons. [Crocodylidae]
MEFXPSVGGXAGTEVMQQTLGLVVQLLQQQQXXXQMAVDEQLIRQQELMQRHLIDFRXXKMTTEDDPEAFLESFERGAMA
AGLDPSKWAAKLGVLLVGQAQAASQYMLRTDAQNYEEVKEEILHHLDITPERYRQMFRAQKKKEEKTPRALLQRLTDLLN
RWLKPAVTSLEEVIDMILLEQFLTDLEEGMQRWVKCHHPKTSREALRLAEDFECAQGEGVREKLDRPNHSISGKMGERWG
EHDSKGLPRPYSDRSHLLQMRKERAHGxGLSKxPDLHLYSSEIYMWREGKNESTVAQEQPSVEMMDCSLGRVAEGQRRAK
PSVLVEVAGRVVWAIIDTGCDQTLVQKGLVPLSEKVRLTPIWMVCLHGRGCMYPRMKVRLTIRGVTWEWPVGIVDDLLYP
MIVGQDWPEIYQLLAKDQEQAGPSEGLIGQENEEGSDREDADLWDMSAFAGGAQFREAQWEEPAFxAVWESEIAKRDQQV
IRPELCDQLPWCEVRKGLLYRLKRGQRDDEVLAQIMVPRAYRHDLLxLAHAHPLGGHLGKEKTIARVTRSFFWPGCYQDV
EQFCNRCPECQRVSVKKPPRVPLQVMPIISEPFTRVALDVIGPLPKSAGGHQFILVLIDYVTRYPEAVPLRAVTSPKVAE
ELLNWISRVGLPREIITDQGTNFMSHVMRGLCQVLRIRHLHTAIYHPQTNGLVEHFNGTLKAMLRRCAQEDPRRWDLLIP
PLLFAVREAPQASLGYAPFELVYGHTPRSLLDVVHEEWEKEGNEGTAPSQYVTNLRERLMKVNQVAGDHLRKAQMNQKQQ
YDQGAKEREFQVGQRVLVLLPSSTSKFLTCWQGPFQIVRRVGPVDYEVLRPGHRRDRQIFHANLLKLWQEPEGLLATPIP
EKEEFGRELGDVGTDRFNLEALATGSSLTERQLRQLNQVLEKFADVFSEIPGRTRDAVHGIKTPEGAIVRERWRRIPHHH
YQAVKEEIGKMLQQGIIKPSRSPWRSPIVTVPKKDGSLRLCIDFRKLNAITQFDAFPMPRVGELLERIGQSEFISTFDLA
KGYWQIPVRPEDQAKTAFGTPWGLYEFCRMPFGLNGAAATFQRLMDWLLAPHHEYAAAYIDDIVIYTKTWGQHLAAVQAV
LQELRRSGLRVNPRKCTLGQRETDYLGFRVGQGQIKPLVDKAEVIKSYQVPRTKRQMRGFLGLAGYYRRFILRFAELAVP
LTNMIKGKGNGPIRWTELQQQAFEAVKQALCKDVILHTPDFALPFILQVDASGQALGAVLSQRIEGQERPIAYASRRLND
HERRYAAVERECLAVKWGVEYFRYYLLGREFTVITDHAPLKWLKSSKTDNAHITRWALALQPFQFTVEYRPGKDNVVADF
LSRCHSSE
>Gypsy-33_BG_pol#LTR/Gypsy 1337-5113 [Blumeria graminis]
MIMKSELIISSLSEPSLKKLNSLVFSCQLISDNKIVNSCAFIDSGGNGYGFIDISFVQLHSLKLIKLENPRTLRVVDGRS
SSAGMVTHFVMVKLSISNHTEVSRLFVTKLGLFPIILGHGWLSRHNPSINWSTNSMYFSSPYCSKSCIMPLKPSHSGRVI
IKAIKGLNAVNLVSSLNIPDRETHIDHLDIKMIGATPFNHLVNQDSTEVFTLSLYAIDQALIEDEAKEIQVGLPQWLHHQ
TTAFSKLESRELPPHRPIDHKIMLKDGSQPPFGKLYGMSREELGALREWLHDNLSKGFIQASSSPAASPILFVKKSDGGL
RLCMDYRALNAITVKNRYPIPLITETLDRLSKARYFTKLDVISAFNRIRIAKGDEWKTAFRTRYGLFESLVMPFGLTNAP
STFQNYINSTLQEHLDVFCTAYLDDVLIYSNTLEEHRSHVNLVLDKLQTAGLQLDIKKCKFEATEVKYLGLIISCRGIEM
DPVKIECVKLWKTPSCVKDVQAFLGFANFYRRFIKEFSRVALPLTELTKKSTLWQWSTECEKAFVSLKGAFTKSPILRHF
DPDRQCIVEVDSSDWAHGGILSQYDDEEILHPVAFFSGRLQPSQINYEIYDKELLAVVTAFEHWRPELQSTIHPVIVISD
HKNLEYFMSTKTLNRRQARWSEFLSRFNFVITYRPGKLGGKPDALTRRSEDRPSDKEDERLSQQLQVVLKPHNLDPIIVH
NLKNNLELSQISLQTPIHSLTTSEQIESLITDGYKVDKSLQKYIQILQGPGPHRSKHLDLSRCSIKNKRLYYDNLIYIPD
IPDLKLLLIKSCHDHPSGGHHGRNKVFAEISRYYWWPNMLQIISQYTNNCHICKRINPSRLKYQGLLKQLPIPERRWRDI
SVDFIGPLPESEGYDCIMVVGCRLTKARHFIPCNTNIDAMGTAKLFYRHIWKHHGFPESIVSDRGPQFVAKFWHAVCERT
GTKLLFSTAWHPETDGQTERFNAILECYLRAYCNYQQDDWVDWLPSAEYNANNTESETTKVTPFFANSAQHPRSAITPYH
QLSPSASEYSKIQVNLGNKFVDQMNQLNDFLRVNMRAAQAFYEKFANCHRSSAPGYQVGDKVFVSAQNIKTKRPCKKLDW
KNLGPFAISKKIGSHSYQLHLPDDLRSIHPIFHTSLLRPDPNNPISGQVNEPNPPIEVDKSGEDLYEVDAIVGSRRLKDK
GFQYRVKYTGQYETSWQPLSDIVSGDSDKLVQAFHKANPRRTKPTEKEYAEAIADANLG
>Gypsy-32_DWil#LTR/Gypsy 405-4201 via tfasty with Gypsy35_AG, 3 frameshifts and 1 stopcodon. [Drosophila willistoni]
MLPIRVLRNRIIMSDQEDQLDPMSHPGEMVNELEAIENNHGNDEKAGINAAMLVENTATLQQLVQLFCLKVHADEMDKKN
DTKLVVENFSKIIPEFCGEGMSVQQWFQNFELNADAYGLNNKQKYVQARAIMIGTAALFLESTAVYEYEQLRQQVLEEFD
CDQPCSAEIHNQLSLRTKSDGESFHxDILQMKRIAARGIIDMESVIKHIVNGLNLKSDYKYTLYGCKSLKDLKDKYDIYK
KIASTKVKTEAAKRAPQRFTPKSNFNRNDRKQHCFKCGSMAHLRKDCKEEVKCFRCNQTGHMSKNCPASYSVNIVYEENR
LKSLQTLQNTTRPVGQFKAEVQIDGICLTHTFLVVDDCTIGIKLLLGYDFISKFAQLFEEEAANQNQISIYNVVKTNTDP
DVPSQYTHVVQSMIEDFGKRKKTADCAITLKIVPDDNIKLFRHAPSRIGITEADVVKQQIDEWLKDDTIRRSSSNFASRT
VIVKKKDGNNRVCIDYRQLNKMVLKDCFPVPIVEDVLEKLGNAKVFTIMDLENGFFHVPVEESSKKYTAFITKSPFGFCN
SAAAFIRFVNDVFQNLINDNVLDLYMGDIIMHAETVKEGLTKLRKVLDVAAEYGLKIKWRKCRFLQTEIEFLGHQIGNGN
IKPGAEKTKAIRKFPMPKNIKAVQAFLGLTGFFCKFIRDYSLIAKPLTDLLRKDIEFKMGPKEQNAVEVLKDALIKEPVL
KLYRRDARTEIHTDASKDGFGAALLQWQESQLHPVLFWSKKTSESEAWLHSYVQEAKAIFLACKKFRQYILGINFKLVTD
CAAFKQTLSKKDVPREVAQWVLYLEDFDFEAVHRPGERLKYVDCLSRYTSEVMVVSSVVTAKIRKAQQDDTMIEAISEIL
KSKPYDNFKLKGGLVIQGTDLLAIPKSLERKIITEAHNAGHFAVQKTMHAVQQSFWIPHLEGKVMQIINNCVKCIIYNKK
LGKKEGFLYQINKGSEPLHTLQVDHLGPMDATSKLYKYIFAMVDSFSKFLCMYPTKTTNADEVIKKLQEWSDIFGHPARI
ISDRGSAFTSSSFEEYTRQNGIEHVWSTTGVPRNNGQIEHVNRSILNIISRLSSEEPERWYKFVPRVQKAINSSVHKSTK
RSPFELMLGVKMRSGTKSDILQLLEEEMLDTFDSERQEMRDEAKEKIQMAQKRYKEQFDKNRKNEVGYNVEDLVAIRRTQ
FAGKKLASEFLGPYEIVKLKRAGRYDVRKAATDTEGPKYTTTSNDNMKLWSFVAENEDAWSSEPDD
>Gypsy-29_DAn_gag#LTR/Gypsy 390-1781  [Drosophila ananassae]
MSFQGPYRENRRAFESDSEEEIIRESQRYRAQAKADLHTMNAAQIEALVQAALANQEQRLRAEFASQISAVNQQLQNMRV
EVPEVESYQRVASVPGAAQCDIPLDIVKSIPDFTGIQDDYVAWRQSASDAYELFEPYPGSSAHYQAVTIIRNKIKGPARA
LLVSHNTVLNFKAILARLDCSYADKTSLRLLRQGLESVRQGEKSLMQYYDEVERKLTLVTNKIVMTHDDERASLLNTEVR
ADALHVFISGLKKSLRAVVFPAQPKDLPAALALAREAEASIERSVFAATYAKAVEQRNQNTDPHKCHNRAFEKQGKNSGA
DGGSEKNPHFFKKANKNQNNSPWRKQDNWGDREIAAEPMDVDPSSSKFRHPTNFRQGNNTQVQNSQTQKRPISSERMTGQ
RRQRVNNIGQTANAEETHDYDSAAEAALNAIDDDSDTFDANDLINFLEEGPAYLSSSEGWRGEL
>Gypsy-28_BG_pol#LTR/Gypsy 1782-5168 [Blumeria graminis]
GCQGAYVVAIGSGYTKATSDEDPLREGCGKPHKFFLTRLSKFPSITFSTFFNYGSSTCFVSNSLATRLFSYNTSFISTIS
GIGGTGPTVTKDAIITVQFHIQRSNNHSKWTESVTFSAGVVPDNTFPADLTLGQTVFHALGLHFLSDETIQLSNLQSSPT
LFPFSNSNNIHHVFTTNSIPLTPKWHKSTPANAFPFTSSYIHDFPSIFNKSLRKTDLLYKTQHVINTGDCQPIKLAPRRY
SPHQLQAIRDFCKTHMGRIIQKSQSPWAAPLHLTPKKTPSKTNEQIWRICVDYRELNKVTKKNAHPLPNAQDKIQRAAGH
KFYAFLDLENGFWQVPMHKDSQEKTAFVTPFGIYEWLVMPFGLCNAPATFQSLMEEVLQPYRLFVSSLLDDVCIWGDSHE
ELHARLQQVFARFVKYGLILNAAKCRLFVEHGVFLGFLISKYGITADPEKVAAIRERPIPSTTSDIRGFVKAAGYLRSLI
KNFSQLAGPLTDLSIGPKNFPVKLTPEAIESFNKIKNALTTAPVIQKFDWRLPTVLESDASQRFVGAALLQPHLHSTNDN
HKHSLLHPVAYFSRKLNPTQQRYSAQERELLGILLSIQHWRHWVEGGDITVITDHESLKSIPTKAEQPPRMICFLDTIEH
YNIRIHYRPGKANVLADFLSRPIDSAYPLLEEEGRVSELQENDKVKYPHQLNCVDLQCVFEHLTLLQQLLPKISKDWVNQ
NFTVFNDKLHLIKTTRTHQIGDPPGPTGIATLLEVLEYEDLVSTVTRIHEDQGHASIGTTMRETERRYWHPELMLAAHEA
IINCHSCQLMKPPDPALGNLTPIKPSLPLTRWGIDHTKIGPQILLHAIEYATGWLESRLVPNADFVNTIPLLRYIMNTFG
TPRQVISDNALCFTGMEAQQFQHRHNLSFTQSTPIRPRSNGKVEQANGVLKAILTRTLLDAPGMKLVDALSRAVSIYNRR
ISPNGYSPFFLLFGTQPSNEEQAYTEYIREPTLQEERDWTEELVRSHAAPIARSYVASMKAIRDKTRAYLQEKKAISRIY
APGDWVLRVRQKKHKFEPYYDGPWAIAACHVNNTYSLISPGGFKLGNRYNGTNLFPAYVREGHPVQSLWYGSKRMLEQDR
RNLKDCGGL
>Gypsy-27_BG_gag#LTR/Gypsy 55-1236 [Blumeria graminis]
MSTDYSRGWAPPTTIENFKQQFATDADALYAYMNGHLNRYRTERDTAQGQLMAARQVIESLEEQNNKLNLDLNIAKAGHS
SNKPSPAIAARDSASAFRSEKFPDPEKFNGTRSKLPGFITQLRMKLEVNNDRFRDESAKVIYSISRLEGQALDQIVPLVN
TNPEKPFSSVTAFLSYLDASFGDPDPRGTARRELKTLKQGAGDFATYYSKFLRVIGYLEYNEAAKIDALAEGLSEDMKDA
MMHRTEIPVILEDYATLLMKIDNQIRGRKAEQKNPREFSRQTVDRNFAHPSHVAGGLAPMDLSTMKLSNTTRPAPENRYN
FVNGFRKLSAGEKQWRRENSLCMYCAGAGHGPDRCPSAKRPNHQAPITGAVLMSSPCTHHPASPGDTKSEPDFQ
>Gypsy-28_DWil#LTR/Gypsy 411-4207 via tfasty with Gypsy1_Dya, 2 frameshifts and 4 stopcodons. [Drosophila willistoni]
ELLTLKIEADEVKxGDSGIxADDFAKVVPDYDGQSMPVEMWFNNFALNAEAYGLTMKQKYVQARSKMTKVAKLFLDSTPV
RSYDDLRVQLENEFGMDDVCSANIHQKLRERKMQKEETFREYMFHMKSIAAEGNIDMKSVLRYIVDGLNMKNDLKINLYC
AQSFRELREKYEIYQHAMEMAKIDVPQGLKKVSQTNYEKKPRCFTCGSSEHLRKECNVTTKCFRCNGEGHISKNCPKNAN
IGAVYNSKPLETANIGVVxNSKRIKEVDIKGCNINALVDTGADVSLVSRSAVEKIGVKSLQKAVKNLVGLGGKVTHPLGT
FQAEVKVDDVQTVQKFVVVANEDVPYDVVLGWDKTSEDNQLSIFNVTETDSDIDVPSDFENDVRAMINDYKAVEYQNVEE
RTQNAAGLVAESTDAVSLQIVPDGVILPFRQAPSRLPAIEAAAVKQQVDEWLNAEIVRRSSSNFASRVVVVKKKDGCYRI
CVDFRKLNSMVMKDGFPVPIIDDVIEKLQAAKFFTVMDLENGFFHVPIEETSKKYTAFVTKEGLFEFNKAPFGFCNSPAV
FIRYVTNVFQPLLNADVLDLYMDDIIIHATTAEECLHKMKKIFDTAAAFGLKIKWKKCHFLKTTVDFLGHTIYDGQIKPG
QEKTKAVRKFKVPENIKAIQGFLGLTGFFRKFIKGYSIIARPLTDLLREDVDFRMDAVALKAFEELKRALTVEPVLKLYD
RNANTEIHTDASKMGFGAAFLQWKDGQLHPVWFWSKKSLETEARQSSYILEVKAVYLACIKFRQYVLGIKFKVVTDCAAF
KxTINKKDVPREVALWIVYLQDFNFDVEHRAGERLKHVDCLNRYPQGIMIIRSETSALFKKAQQEDTMSKALIELLQNQP
YEDFKLKGGLLYKTVGGNELLVVPKQMEKEIIVEAHNVGHYAMQKTMHAVQQSYWIPHFESKVARIINNCVKCIIYNKKF
GKKEGLMQGIDKGDRPLETIHVDHLGPLDATSKQYKYIFAMVDAFTKFVWLYPTKTTSCEEVLRKLKEWSAIFGNAVRII
SDRGSAFIAKDFEEYIKSNGIHHVWTTTGVPRGNGQIERVNRSIITIISKLSADEPVKWFKYVPNVQRAINSHVNVSRKR
SPFELMLGVQMNNGPENQILKLLQEEVCDKFDEERQSMRASAKREITKAQEAHKKQYDSKRKIDNVYKVADLVAIRRTQF
VAGRKLASEYLGPYEVIAAKRCGRYDVKKAAADIEGPMLTATSSDNMKYWRNNQDSDELSSGSDD
>Gypsy-29_BG_pol#LTR/Gypsy 1589-5934 [Blumeria graminis]
RAVGKLLSRGTVSSHGKCLDLWKVLNADFRSLTGGKQFLVSIELGRNGSFIKTTAHIDGGANIFGALRTSVALQLRDLLG
VKFLTLPKPIIPTGYNGQAGAAITHVILLTLTIDRRRVNFPFLITDLGSNDVLIGRKFLEHYELKQNYNRRTKNRLEWPF
DMPPQHYFDRRLELLLPPKTPMVNLQHQLDQQRRDALFEEELSSVQTLPSLRPKKTQKRPSSFVRELKQGFLRMNELLAD
HQLAKSSSTTRDPGSRVEQADQALQRQTVAVATRRVKNEPCKTDINLISAASMHQFYLHRKHRQKAHNDDSEVLVASLKD
IQDEIQRRQNELAAVAVELSALDAGLSPAETREAKYRQNDELVTERLPEKWKEFKDLFSTRASDNLAARRPAVDHEIKLT
GDNTLTTEPLRRMPDEYLAEAKRYITENLHKGFIAPSNAPWAAPILMAKKAGGGLRFCVDFRKLNELTQKDPYPIPLIDE
MMARISKAKIFTKVDIQQAFHKIRMSKDSEDFTTFRTRYGTYKYKVLPFGLTNGPATFQRFINDILMEYLDDFCSAYLDD
ILIYSDSEAEHDLHVQKILEILRDHGLQADIKKSEFGVTRTKFLGFIIGTTGIEVDPEKIEVIKNWEYASNVRGVQSYLG
FCNFYRRFIKDYSSICRPLTLLTGKDVPFHFGGACKEAWERLRHALQTAPILCHYDPFKQTRLETDSSDGVVAGVLSQLQ
DDGMFHPVGFFSKTMIDAELNYPIHDKELLAIFRSFQQYKPELLGAQKTVHVYTDHRALEYFMSTKDLNARQARWAEFFA
QFHFEIMYRTGVTNTLADTLSRRDQDLSPLEAKKRALRNQQMIPNDKISNEILQEMAQTQLADLQIVDHDYVEISPLGTR
ETVSPVDLVPLELPEEQFLVGEAPDATSTAAYDIENYDIIDQVFTANKESEELETLREKARQHHPEYTLASGKLFFHGRL
EVPLEPPELRTTLIRHVHAQPQVAHAGNSKVKLLLGRKYHWAGMTADITRYISNCSCARMKARRDKTPGFLHPLPIPARP
YQHLTMDFTELPLDENGFDAAFVIMDRLSKKPVSIPCHKTITAKEMATLFAVHWSRHFGMPDSIVSDRGPQFVSSFWNEY
CRILGTKVKLTTSYNPNVDGQTEIMNQYIKQRLRPFCTYYQDNWSSLLPIMDIAQLTLPHESLGNLSPFQLLNSYEARAS
WDLHNPEPPATATETLNREDALCVATRMKDAMEFAKSSLKIQQEKMERLANRSRREVDWEVGDMVLVSTANWKMSRPSRK
LSDKWYGPVEVLKKVGESWELKLPEEWKIHPVFHSHSLRKFVQDPLPGQVRQAPAPIQLLPEQDEWEIEGILSSRVYRNT
LQYQIQWKGADEDLEWYPCSNAMTAPHMIKRFHIRYPTARGPPRLLQKWLEAYNNGINDYSELEDDHAMTATARSQFFRI
MSRSVRAVL
>Gypsy-28_DYa_gag#LTR/Gypsy 2299-3399  [Drosophila yakuba]
MSKRTIVDKTRSRLGLRSSGSLPEIREEELIAMDSGHATGGSRTTSPIPGGSNSIGNMSTVLNTSINTTLSTTLNPKDIL
AFVKQLPTFDGTPGTLQKFIVSVEEVIMLIRGTDQTPYGQLLLRTLRNKIIGRADETLNMLDTKLEWDSIRDNLKRMYAC
KKTEPILISEIQNQPNGLSFGKLFYEITRLRSELLTLPTNSEQGVSAESKRALYDGICLNAFLVGLRDPLRTVIRAKGPS
TIEQAHEWCQVEQSFMYQRQNRDNNYSNSFDRNRSYQNRSGGRFERNRNYPSNNYRQDYRSNNPFRQEESRNYSNRGRNN
SRDGSRDPQSNNSGRRNRSPQRAPANFNNIDDSVNFQQGASTDKSVT
>Gypsy-33_NV#LTR/Gypsy 88-3975 via tfasty with Gypsy65_AG, 5 frameshifts and 2 stopcodons. [Nematostella vectensis]
MPDDNSETAAILTPIDVRGIPCFNPREDSSNLAIRWKKWKRSFNLYLTAKGVVNDKQKVALLLPTAGLDLQEVYFTLVGE
DEEKAFSECVKLLDDYFIPKVNLPFERHQFRQMSQAPGEKVDxFVSRLRQKASTCDFNNVDETIRDQLIEKCLESKLRRK
FLEKVNASLKDLQDVARAYEAVEEQMKSLESSHAVNALNQNMNNGGDHTKINRQSGLNQGRCFNCNRTGHIARDPVCPAK
SQNCNSCGIKGHFSACCKTTRRKGNAYQVAAEENGDSEIDESYAFVVGQNDGARSGEVNLTIGGVSLEGVLIDSGATCNL
IDYATWTYLKDHRVECNSASSNKKLFAYGQRKPIDVAGTFTTEIICEASGKKCRDEFTVIEGKERPLLGKKTAEQLKVLR
VGPETRESVSAVVEASDSDIREQYSDIFSGVGKLQDYKLKLHVDEGVSPVAQPVRRLPFGLRVDEKLDDLLEKEIIEEIP
EATPTRWVSPLVVVPKADGKDIRVCVDMRRANEAIIRERHPIPTIEEVLYDLNGATVFSKIDLKWGFHQIELDEHSRDIT
TFVTHRGKYQKIISDVLTGCNGVANIADDLIVYGTDLAEHDANLHKVLSRLQEKGLTVNGDKCQFRLPKLTFFGHELSAQ
GITPSEEKIAAIVNARPPQNVSEVRSFVQLVQYSAKFIPNFSQISQPLRRMLRKEQSFVWDTEQQEAFDKLKKLMTTATA
LAYFKSDCKTRIVTDAGPEGIGAVLLQLQDEQWRAVSYASRNLSDVERRYAQTEKEALAVVWACERFNIYVYGQEFELET
DHKPLECIFGKTSKPSARIERWVLRLQIYNYKVIYRPGKTNIADALSRLNQRRPKDKSSETEDTVRFVAMEATPVALTTR
EIERASENDPELQSVHYYIRSGDWSQCKLAAYTCIKNELCTVGKLVMRGDRIIIPGSLRSRVLEAAHEGHQGIVKTKSRL
RTKVWWPKMDSDAERVCKSCHGCHVVGKFAAPEPMKRSEPPSGPWQDLAIDLMGPMPTGESLLVIVDYYSRFYEVVIMNS
TTSLQGSxYALTQVFARFGFPHSIKSDNGSQFVSEEFTRYLRECGIEHRISPPLWPQANGEVERQNRTLLKALKIAAVEG
KNWRNELPTFLLAYRSTPQATTGATPAFLMFGRELKTKLPELRGEKSISDESMRDFEWRNKLSQKSYADDKRHAVSSPIV
PGDKVLLKNTKTSGKLEPNFETEPYTFITNEGSDVTVESEEGVVYRRDSSFVKPYNVPAERSEPDQPPENEEISSSARPR
RTVKTPERFKDFVLDMR
>Gypsy-49_BG_gag#LTR/Gypsy 83-1225 [Blumeria graminis]
MSTEESTTANANLLESEWDKLAALIGEIQSQPTSSSAPIPMGAHPKVKMFCTQAFVMGKQAASHPEIMGPQIPSTACDNQ
QFLMYEYFSLGMDSCRTIKPSTSTSRQEGNRPDLFYGDRDKFKAFSRQLALWFGQNPNNFRSDNEKISFAASYLRGEAFE
WLEPFVNESDGKVQFDTFDNLMHALRAAFADPDSYATSERELDQLKQYSSCSAYFSRFSALISQLGWNEDAVKIHHFRRG
LKDGIKDMLVGRDVPSTINEFAALCIKLDNQNQARAQEKKSVGPLRLQNNPLKQANSNSYLPPPSPQSAPQQPPGEPMEL
DAASRNAYRRANNLCTYCGASGHFVRYCPKAEAKKNKVASAIVQSPDQPEENSSTIFETKN
>Gypsy-45_BG_gag#LTR/Gypsy 40-1596 [Blumeria graminis]
MSDTETRRSSNITIRSVNKILREFMEETSAKQEVTDLRINAQSEAAIHHIAKAQEKNSAQYKELNERISNLEGLMTDISX
SLKGESKADIEKKSENPTVGIPELRVTNPDLPPAAETFSTPFSTKFQLRKEEDIKRRSNGRIDFSSTKKDDSSNLSPGER
FVKEAWPRALLAXDVMHDEFASIKNKVSLRPELRLATADSTIFTKLAEIQSAFRIALAPYWYWPQRISMEMSEDFHCVRV
WVEENPSVTWMMLLEAIFTTMQKLDALHSPRTIFTRLTTHEGEDITKFASRLRTTFYQLSKRDRDSDYIRDAFVDIVKDG
MPLVWTHIQPQMKENSTGEAVELLTQTAKRISKWSTNLGACTTTTTTHRNDPVLALPQMPDVSSFQTNDKLGSKHESPAT
DFAMPIRDGSCNICKKMGHWARECPENNNQDSDHARNKTRYRNENISGIKKKFSALIARKRFPARTFTPHRNTGNNRNKR
SYLVNSTDENSNHPDVEATFEDQENTDDELERIFDELEN
>Gypsy-55_NV#LTR/Gypsy 28-3762 via tfasty with SUTRVLEP_pol, 2 frameshifts. [Nematostella vectensis]
MATYQITPPDKFEFGKPDGWPKWLKRFERFRIASGLDKKDAPSQINALIYTMGERAEDVLSQFSLIEAESKNYKVVVEKF
DGHFVKKRNTIFERAKFNQRVQLAGESVDAFITDLHSLAEHCNYGNLTDELIRVVGLQDAKLYERLQLKADLTLEKAIDE
ARLNEAVKKQQNVVRGSPSISNENSVDKIGKKIWKHRDNKKPFKTPESKESKTKCGRCGKTPAHARAQCPAADAECHKCK
KKGHFKAMCRSEKSVREVSDNSEPFLGTIDVEELTTDCWNVDVTLEGIPVSFKLDTGADVTVIPEQIFKKTGCKLKRSNT
RLTGPGQQKLKVQGMIEAHITHKDKSIKENIFVVKDLKRPLLGRPTIETLNLVSVINSVKLTQEEFCKKFPKLFKGLGKL
DTEYHIELKEGAEPYAVHTARRVALPLLPKVKQELERLETQGVISRVEVPTDWCAPMVVVPKSNDQVRICVDLTRLNDSV
KRERHILPSVDETLAQLGGAKVFSKLDANSGFHQIPLSKESTLLTTFITPFGRFCYNRLPFGITSAPEHFQKRMTSVLAG
VEGTANMIDDTLVYGRDQQEHDERLERVLKKLESAGVTLNRDKCEFSKNRVTFLGHVVDSDGVRPDPTKIKAIADMKEPK
DIHELRRFLGMTNQLGKFSSKLAEASKPLRDLPSTKNVWIWGPSQQQAFIAVKEILCKDATVLAHYNAQLETRVSADASS
YGLGAVFEQQQPDLSWRPVAYQSRALSSCEQRYAQIEKEGPPRVQRFRMRLMRFHYSIQHIPGKDLIMADMLSRAPVENR
DGQEENLHEVSQEFVDHVIAGLPATNRQLDNIAAHQREDEVCQLLMKYCRDGWPEKANLIKLYQSVAGELTVQNGLLMRG
CRIVIPSSIRMDILEKLHTGHLGIVRCRQRANQSVWWPGLARQLQECVENCKVCRKQSRNPAEPLMATELPSLPWQKVAT
DLLDYKGHQYLVVTDYYSRYVELATTTSTSGDIINHLKSIFGRHGIPECLVSDNGPQYSSHVFAEFAREYGFTHITSSPR
YPQGNGHAERAVQTVKSLLKKCNGDPYLSLLTYRATPLEHGFSPSELLMGRRLRTTVPISPEQLKPAVPDFNRVKAKDDM
IKDRQKRNFDQHHGARELTPLKSGDKIWLSDFETEGTVKNQVETRSYTVSTPRGELRRNRRHLKSLPDESKETLDCEPDP
VPPDADNTLETAITPAHVPTESPIHDSMRTTRSDRIIKTPQRFKE
>Gypsy-133_GM_gag#LTR/Gypsy 644-2161  [Glycine max]
MHPCINSFFSSKLSKDLDKLFVNFVDMDIPLRSTRKYLFKKTDLLRLRELASLVSDPVDFQAHHGKLLRILRVDVEEGCL
ETLVQFYDPLYHCFTFPDYQLVPTLEEYSYLVGLPVPDKIPFHGFEPTPKPSDIAAALHLKTSIIQANLTSKGGLQGLPT
HFLYQQASIFAEAASILAFHSILALLIYGLLLFPNIDNFIDINAIKIFLTKNPVPTLLADTYHSIHDRTQAGRGTISCCA
PLLYQWFTFHLPQSRAFKTNDDKLSWPRRIMTLDPSDIVWYQAASDVGEIIVSCGEYPNVPLLGMRGGISYNPLLARRQF
GYPIKTKPNNLALTNEFYLNHGDHSNKRERFAQAWSAIRRLNRSQLGKKSDYVHESYTQWVIDRTKSFGLPYRLPRYLSS
TIPPSSLPIPFDTKEEFHEQLTKERQEKETWKRRCQELEQENETLKGKIAQQSRELFIQNQRMIEKDDLLRRKDALLHRD
ARRKRRFMDLFSRAHSDSEDPSTPGV
>Gypsy-84_GM#LTR/Gypsy 41-4599  [Glycine max]
MPPKQNPLTLIRRMDARVASLEEEIAGVKTTLSSMERNQALLISMMEKSLGKSILTEEEGEDGDGGLAESGGDGSGKKTA
SSASRKMPSDVISEFRQSAKRVELPMFDGEDPVGWISRAEVYFRVQDTTPAVKVDLTQLCMEGPTIHFFNSLLNEEEELT
WERLKGALVERYGGHGEGDVYEQLTALRQVGTVDEYITEFEYLTAQIPPLPDKQFSGYFLHGLKADIKGKVRSLLAVGNL
SRGKLLQVTRVVEREVRGDAGTGISKHPKSGHGSSKPGFGGSSKGGGADWVMVKGKENGPSGGSKGGGFGSRSEKGRNGP
RDRGFSHLSYNELLERKQKGLCFKCGGPFHPKHQCPDKHLRVLITEEEETEEGGGKLLAVEVEDEEGGSEGEMSILSLLQ
LGQLGTDKPQSIQLKGAVNGVPVVILVDSGATHNFIDKRLVQKMSWAVDNSTSMCIKLGDGTKAQSIGVCPDLGVEVGEV
QLAIRAHLFDLGGVDIVLGVDWLRTLGDIIMNWNKHTMSFWHNKKWVTLQGLNDNMETLNSIVGGTNRGGKGWMWSIEKK
RGDENDLNIGQQKELEGLLSKYEDIFKEPRGLPPRRKKEHAINLKGGLEAVNVRPYRYPHHHKNEIEKQVKELLAAGVIR
PSTSSFSSPVILVKKKDGSWRMCIDYRALNKATIPDKFPIPVIEELLDELHGATIFSKLDLKSGYHQVRVHEEDIHKTAF
RTHEGHYEFLVMPFGLMNAPSTFQSLMNEVFRVHLRKFVLVFFDDILVYSRDWTTHLCHLEEVLRVLKLHGLVANKKKCH
FAQKSVDYLGHVISGKGVAVDPNKVESVVKWPTPKNVKGVRGFLGLTGYYRKFIRNYGKVARPLTALTKKDAFTWNEETH
KAFEALKESLTTAPVLALPDFTKEFIIECDASGVGIGAILIQEKRPIAYFSKALGVRNVAKSAYEKELMAVGLAIQHWRP
YLLGRRFTVSTDQKSLKQLLQQKIVTVEQQNWAAKLLGFDFNIVYKPGKLNGGADALSRVHEGGEVCVMTSSLQWKDADI
LREEFAQDPHLQKIVNDLQQNKDSRPGFEFKQGVLLYDGRLVISSKSVLIPTLLKEFHETSQGGHSGFYRTYRRLAVNVY
WVGMKNVVQEFVRSCDVCQRQKYLASSPGGLLQPLPIPDRIWEDISMDFITGLPKSKGFEAILVVVDRLSKYCHFIALKH
PYTARTIAEVFVKEIVRLHGVPLSIVSDRDPIFMSNFWREMFKLQGTKLKMSSAYHPESDGQTEVVNRCLETYLRCFIAD
QPKTWVHWVPWAEYWFNTTYHASTGKTPFEVVYGRTPPTIIRWIQGEVRVEAVQKELLDRDEAIKQLKVHLLRAQDRMKQ
FADKKRCDRSFSIGEWVFVKLRAHRQKSVVSRICPKLAAKYFGPYPVVSRIGAVAYQLKLPEDSRVHPVFHVSLLKKAVG
SYNGEETLPDDLDGEKDNTFEPDTVLAQRTVQVQGEEVRQVLVQWKGRNIEEATWEEAVMMTSQFPNFSLEDKAVISDGG
>Gypsy-44_BG#LTR/Gypsy 121-5091 Gypsy-11_BG and Gypsy-16_BG products near-identical. [Blumeria graminis]
MGSEMNNLTIGMDFVATGLSNQKSMPHGVIQSEVERLVEEMRLRGIEHRRYLGILQSQMNEMMKTMQERSENEKKTHLQP
SRTNVGGQSERRECFIEEEPLKWPEAYDHKDRTKWAITHGILRYIYRRDVEERCILQPSDFLMQLFSRAVTGTAKDMITG
QFQNMLANGTEWDALGLLRAMDDTYRDRNEEQLAAALFHACRQFRDEKLSSYLPRFQQLLSRSPSSKGNEKCKIYKLRNS
LNKTTRNYMIGSLRPRTLRELIDYLSILGSEIDEVGVEITREYLLGQTGYFDDGTRGIAGGKLLGEISQEIMHNPSAKAS
SYGKTRKIGVNKVRAKWVSLVELNERKIDGSCLRCGKKGHIIADCRLLPAKRPDTPVQAATFVRKISDTVKAKDAKSVVE
KRLDLESNRPQLQANGAMELIISSKSIGDKEAEGAMDGSSFIIDTVINGIYSVPTLIDNGCECLAAVSNSLVQRANLPRI
KINPRKLTEATKNQHHKDFITEMVRMELDIDGYQRRLYAYVIPMLSHDLILGKPWMEREDVIYNARERFMDIGEAIVNDQ
PMRVWEKGQQAMTDSSYRTTNIKSLSAGVFLATVRKARKSSAGKTQLFSVTLADIQKALAPTKKSPTNLDRLPNYCKQFA
DLFRKELTDKLPPHRQGCDHEIRLESDKSIPWGPLYGMSRDELLVLRKTLTDLLDKNYIRASSSPAGAPVLFVRKPGGGL
RFCVDYRALNAISKADRYPLPLIKETMSKLSRAKWFTKLDVRSAFHKLRIKEGDEWKTAFRTRFGLFEWLVMPFGLNGAP
ASFQRYINEALREYLDDFCSAYVDDVLVFTNGDEEQHQRHVKLVLEKLQKAGLGLDIDKCEFSVKETKYLGFIISSEGGN
SSVKMDPAKVRAISEWQAPTTTKGLRGFLGFANFYRGFIKGFSKICAPLTSLTGKGTPWKWGSEQNDAFESLKEKFVAEP
ALAQWDPDRETMLEADCSGFALGGCLLQKQENATWKPVAYYSRKLTGAEMNYEIHDKELLAIVASMKEWDAELRGLAQAF
TILSDHMNLRYFLTTRKLTERQTRWAEFLSRFRYTLVYRKGADNERPDALSRRDQDRPKEGDPRLLSRERQVLTPIHASK
LCVGNINLAEGHEIFVNEDLQELWDQAIKNDERYIQVAKAVQSGERVWPKDIKLQMEGSNEPTPIKATIAACEFDNDIGV
VRYQGRIWVPLYEPLTTAIIQNVHDSAVAGHPGRDATLAQVAREYFWPGISKSVKRFCKNCHVCGRSSIWRHQKQGLLXP
LPVPDRFHQELSIDFMVELPKSNGATNIMVITDRLLKSVTLEAMDKMDAETCAKRFIECHWRYHGFPKALTSDRGSNWTS
KFWKRLCELVGIEQRLSTAYHPQTDGATERMNQEVQTYLRAYISYTQHDWSDSLAAAQIAINNRDVVSLGGISPFFATHG
YHVNPIQFVSDQSIIPASTGKERAEXFVERLEKVTIFMQSAMAAIQERYKDLTDKKRQPAPRYEVGDKVWLPLRNIRLED
QPSKKLGXQHAKYTVTKIISPEVVQLNTPGKVHNKSHVDLLIPAEENPLPSQILEDENPGPIIDVDGEEEYQIDEVLRCR
TKXGERQALVKXTGMAQPEWTSLINLQDATALDDWEKKWGSAEKNNGPALRKEKRRG
>Gypsy-35_NV#LTR/Gypsy 19-3978 via tfasty with Gyps1, 2 frameshifts. [Nematostella vectensis]
MASGYVLPPPAPLEIHNSNAADKWKRFVLAWKNYSLATGLNEKAEAVQVATLLTVIGEEAREVYSTFTLTEGETDKIEPV
IKKFAEYCQPRKNVPFERFRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRESKL
TLAKTDEICRAAESMLAQMKIVKDTSETDVNAVSKFESKKPNIKNYRRKQRGQGKQCDNCGYQHMANQESCPARGKDCRK
CGAKNHFANRCKQEVKATEVEETDMYPEETYQTEEVLAVWLDDSQLVTFQSESGSFIRFPTDTGAQCNVLPVHIYKQACN
DHKLVKVKPVQTSLVAYGGSKIKVVGHVTIRVWRNHVSCQLDCRLVDSHEIRPILGRKACLGMNIIQYNDNDQFHKPQTD
GATVFTVDPKPGAALTREEILAKFPAVFSDGVGKLDGEYTIRLDTNAQPVQHAPRRVAVALRPQLKKTLNDLVDKEIIAP
VTTPTSWISSMVVVPKKDGKLRICLDPKDLNKAIQRENYPLPTIEEVATRLHGAKVFTLLDVRNGFWHVQLEEESTYLTT
FHTPFGRYRWKRMPFGISSAPEVFQRKMHEFAEGLTGTEVVADDFLVVGYGESYEEATADHDRNLLAFLNRCDQRDIHLN
PDKMRLRKSELLFIGHIATDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDLTQSDVQFI
WDDAQQSAFEKLKDAVTVTPVLRYYNLDEEITLQCDASQSGLGAALLQNGQPVAYASRALTPAETRYAQIEKELLAIVFA
CDRFHTYVYGREVVNIETDHKPLEPIFIKPLATAPKRLQRMLLSLQSYSLNVKYKKGKDLYLADTLSRAYLPEVNAWECT
RELEEIDHRSWMPVREETWQQLKNAAVDDAVQQNLREVIKRGWPESKTDLPECVHPYFDIRDELTVQEELIFKGQQLVVP
RALRKELMEKTHSSHIGIEGCIRRARDTFFWPRMTVELKEYITKCEVCLTHRSGQRKEPILQHEFVARPWGKVSADLCEL
DNRTLLVVSDYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNGPQFASAELVYLPDLDFEHKTSPRYAQANG
KAENAVQTVKRLFKKCKTSGGSEFQALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQPSYNTEEDTRKLIGTKQ
RQKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPGTCLGQAGPRSYNVETEGTTYRRNRRQLISTGETNSQVPDVLESPE
PDDAQQQPSQVAMPPDSSQAITRPRREVKPPAWLKDYVPK
>Gypsy-33_ST#LTR/Gypsy 1335-6318 via tfasty with SZ-10, 2 frameshifts. [Solanum tuberosum]
METGGETQAPIGEITLATLLEVLNNVRGDISRMDGRLANVEGRVNSNDSTPQATFRASTSGHDHTNSPTLTPGTLHQALH
PTFVQLGSNSQSTNRPFHFPLSQEAPPNQSHPYQTPLNQNIPYQRPQPQPNPVNEVRNDEDQGGYEGEGEEAPWNESPRN
RPRGQVLQGGPRGRLGPMPFDRRQHGNHPQGGDNGKSMSIEEVGQEAREEHGNRYQGGHQRGYYHNDQGGHGGRDVGINS
IKMTLPTFKGECNPDAYLEWESQCDRIFNVNDWRRSKVVAMLSLEFEGYAVTWWEYMKRYHLVVQEGHPPPWPELKRLMR
AKYVPERYRQGLLAKLYNLRQGSKSVEAYHDEFQNIVMKLEYREIEEHAVIRFKVGLNKEISSKMTIHRFATLNDVFEAA
HEIELEFKEEKVSKYKTSSSNSWSKNKGGAQTSSGWNKGSDVKKPYEKKPFEGNTPKYPPRDKGITDPTKFPKGIQCHKC
RGWGHIMRECPNRLNALIQGGEIYLSEEEEQEDGCEEDPQEEDEFEDGEDEEPDLCVKEGESVAPLYVVRRAMISKAMDD
PSQRENLFHSKCFIKDNVCSLIIDSGSCANVASTALVEFLKLPTTKHATPYKLQWLSECGELRVHRQVMIKFKIGKYQDE
VLCDVVPMQACHVLLGRPWQHDRSTKHDGRTNKYSLVLNDHKYVLHPMSPSQVNDVYQRMSESREKKKCEEEHVEAESQE
EEERRKLKGKAQVLLANYKEIREEIESESSLILITHRDHVLQTNQSHSSLPNSISFLLQDYEDVFPKELPSGLPPLRGIE
HQIDFVPGSQLPNKPAYRSNPEDTKELQRQVEELLNKGYVKESMSPCAVPVLLVPKKDGTWRMCVDCRAINKITVKYRHP
IPRLDDMLDELNGSCVFSKIDLRSGYHQIRMNPGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVMKPFIGKFV
VVYFDDILIYSKTMHDHVEHLRCVFDVLRKEQLYANLDKCSFYVDEVVFLGFVVSSRGVEVDESKIDAIKNWPIPKSISD
VRSFHGLASFYRRFVKGFSTIAAPLTEVIRKDKPFKWGEEQAKAFEALKSMLSSAPLLQLPDFDKMFEVECDASKVGIGA
VLMQDQKPIAYFSEKLKGATLNYSTYDLELYALIRALGNWQHYLWPKEFVIRTDHESLKHIRAQGKLNKRHAKWIEFLET
FPYVIQYKKGKENVVADALSRKHVLINTLSSKLIGFECLKALYPKDPVFAQIFKDCEEWERERWMRDRSSTPYSKFDGFL
FKGKRLCVPMSSWRELFVREAHDGGLMGHFGIDKTRGILEEQFYWPKMHKDVVRICGQCVECRRAKSRLLPHGLYTPLPT
PQRPWLDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKCDDASNVASLFVEHVVKLHGIPQTIVSDRDPKFLSH
FWKELWGRLGTKLLFSTSCHPQTDGQTEVVNRTLGSMLRAVVHGKLASWEEHLPLVEFAYNRVIHRTIGMTPFEVVYGFN
PLTPLDLTPLSQDVVLSLDGSKRAEAMKKLHEKVRLHLEKKNQDVAKRANKGRKRIVFEPGDWVWVHFRKERFPTHRKTK
LMPRGDGPFPVLERLNDNAYKVALPPEYQVHNTFNVCDLSPFPTVDDDDPSNLRTNSFQEGE
>Gypsy-36_DAn#LTR/Gypsy 100-4041  [Drosophila ananassae]
MQTPRAPPTDGKVSHVTLPKFNPDSAGADASSWCSTVDLIFADNVLEGSNLVIALSKALEGGASQWLSQICFAGITWAQF
KELFIQRFVGIETSAATLLSVLNGRPKPEEGFAEYGSRIVTLLMSKWKTKDLEEIAVSVTLAHMAQIDNKLTHWIFTNNV
KTRNELQQQLHAHSFKKRSMDDDSTGSERKKYKFPTPMKCNYCGKGGHKYAECRARLEKGQSKGKIHSGSNVTGLKDRSS
IKCFKCDELGHFASACPKGRTYEKRVDICTVAPPTGIIRASGESVPFCFDSGAECSLVKESVVDKFKGKRINNIVKLNGL
SNDSICSTQQVLCNINIEQYCFEILLHVIMDKYLKYDVLVGREILSLGFGVTIDAEKFQIYKTKRVDVLTVTDYKDILNA
DIDLVESDKMALTNILKCYSDWFISGIPKTRVSTGQLEINLIDPLKTVQRRPYRLSEEEKNHVRCKINELLKANVIRPSS
SPFASPMMLVKKKNGTDRLCVDYRILNENTIADRYPLPLIADQIARLRGAKYFSSLDMASGFYQIPVHENSIERTAFVTP
EGQYEFLTMPFGLKNAPSVFQRAIIKALGTLAHTYAIVYIDDVLVIAETKEEALERLRTVLETLSKAGFSFNVTKCSFLK
TRIEYLGFEISNGEIRPNPRKIKALIDLPPPQSVSQLRQFIGLASYFRQFVPKFSETLKPLYHLTSKKIATFTWLPEHEQ
IRTKIISVLTQAPVLIIFDPQYAIELHTDASSIGYGAILLHKIDKKPHVIEYYSKCTSPAESKYHSYELETLAVVNSIQY
FRHYLQGRKFVVYTDCNSLKASRTKLYLTPRVHRWWGFLQSFKFDLEYRKGERMAHVDCLSRNPVPEKNNDQNKTPVENS
GQNRIPEKRINLTEVTDNWLISEQQRDSEILEISTKLRNNELPDNLDKTYELRKGILHRKIQRNGKTKCLPVIPRSFRWA
IINHVHESIMHLGWEKTLDKVYSYYWFENMSKYVRRFVENCITCKLSKPPVGKVQAELHSIPKIDIPWHTVHIDITGKLS
GKNDLKEYVIVLIDAFTKFVYFYHTLKIDTESCIKAVRSVVSLFGLPTRIIADQGRCFASSDFREFCSSQKINLHLIATG
ASRANGQVERVMSTLKSMLTAVETGQRSWQDALAEVQLAMNCTANRVTKFSPLELLIGKEARPFGLLPIDEEVDDKIDRE
NLRKEAKQNMEDGARYDKRRFDSNKAKIVKHSLGDHVLLKNEERHQTKLDPKFKGPFEIVKILDGDRYLLKSLTSKRTYK
YSHEFLRALPNNQLIHEDRDGMMENASDNEERDS
>Gypsy-41_BG_pol#LTR/Gypsy 1749-6071 [Blumeria graminis]
KRQSLGKASFLGQVKNMQYLDISQLLGGPHLTMPCFLTKNGISYSLQTLIDSGANGYGLLDSSLLKRLSHSLKPFLHRLP
RPIPIKGYNGLAGKSITHYTHLNLTIDKRIQSFTPFLVTSLGNHGLILGRQWLAEHRVLLDAARRRLIWPSDYPPTQSYA
RNTIIGHTNLDSPRINRSHQRDTERRDRIIDRDWKRRDAVTSARKSREQPRILHNKSPPPKDSIILKKILKKNLPAQDST
PTVSDHSEPPPTISSSLITESPTITPSFSSPFSSSSSHVKQMYTALTRINRELLKPEHENSQSLIPRVRKQLWKPKLQQP
NSLVNIAFISGNAFHMNAKKSPHDHVFSSSIHELDALIEQHTEFKSYETATANLVQDFHNQCRQRPSAAVLAAQILELDT
EPPVPDEYADYADVFSKDASNILPPHRPYDHKIQLEDKGENALKYSPLYKMSLDELEAVKAYITDNLDKGFIEPSQSPYA
APILFVRKSDGRLRLCIDFRALNALTRKDRYPLPLIDETLSRLARAKIYTKLDIRQAFHRIRMDPASEEYTTFRTRYGAY
KCKVLPFGLTNGPATYQRYMNDVLFDYLDVFCTAYLDDILIYSENELEHKYQVTLVLQRLRDAGLQADLKKSEFSVKRTK
YLGFIVSTDGIEVDPEKVSVVESWQYPTSVKGIQSFLGFCNFYRRFIKNYGIIAQPLVYLTKNNVPFIFDSECAYAFDTL
KATLTSAPVLQHYNVDLECMLETDASDGVVASVLSQKHGNDWLPVAFFSKTMAPAELNYAVHDKEMLAIIRSFGNWRAEL
QGTPHQIRVYTDHKALEYFMTSKALNSRQARWAELLADYNFMISYRPGKDNPLADALTRRVDELEPQNRVKKSQRLFRLL
KEDQLDPKILSRELRHDTPEENVISAIDIAPISSSIGVVDQILSANRNTPSLQALRLQALSDSPGKFTLLQGLLLFDERL
VVPDTENLRTLLIREAHDQISTAHPSAAKTLRLISQSYFWRGMSRYVTQYCRNCHTCRRSSVPRDRKPGFLHPLGVPTRP
WEHVTMDFCSFNKDKHGFDNVLVIIDRFSKQAISIPCHKTVTSRQLAMLYVYHIYRYFGAPVTMLSDRGPQFISSFWEEF
NRILGTKIKLSTADHPQTDGQTEIYNQYLQKRLRPFVNYYQDNWSDLLPMMDYAQLTLPHNSLGGLSPFEVVHGYPPRTN
FDWKSSHAGTTPTEKLNLSDAQRLASRFQNAWTFAQSQIVKAQETMRRNVDAHRRPVDFAIGDKVWLDMRYYPSARPSKK
LDFPTNGPFTITAQVGNSFRLALPETMKIHDVFPPGKLRKASNNPLPGQFQNESFPLNITGEDEWEVEEVLACRLRYGRL
EYRVTWLNHDVDLTWYPASDLKYAPHKVRDFHLANKEQAGPPLKLEDWIKAWEQGRDNYDDLDNDKLMSKTSRARFFRRG
G
>Gypsy-37_AMi#LTR/Gypsy 59-4203 via tfasty with Gypsy-169_DR, 4 frameshifts and 1 stopcodon. [Crocodylidae]
MEVNLNAQIDLLGQTLHAVTXVLEVQQQQAIQQQEWMRRNWTTFRMHQMTHEDDVEAYIESFERTVIQMGLDWLQWASQL
GSLVVGKAQAAYRALPREDAYDYDKVKAAILHHLELTPEHYQKLFWAQKSKEDRKPRNLMQLLKDLLDKWVPPGKVDRAT
LADQILLKQFMKDLEEDTQLWVRRHRPQTATEALRIAEAFAASEGESLREKTYRSSATTSKKEDEPQRGPSRYTRxGVVC
YQCGKTGHISRECTMGTPERWKPTGEVPGVRDWHETSEPVEEMDCSFGHSEEVVVWDRPMVTAWVAGKPLQATLDTGCSQ
TLIRMGIVPRDAIEWCHPVRMRCIHGEAEQYKRGFVEVKIADRKGKLQVGFAPHLDGQMIVGRDWPPLYEVLEEVRTDEL
RRKGRPRGEGWIAEEELASSGEEEWISLKTGTEGPQFRTAQEEDDELQKIRETQVARIEEEIIRPKVDVSAPYFWVHEGL
LYRVNKCPIRGEGTQQLVVPKSLRSMSRVWRLAHASPMGGHLGADKTLARIGQWFFWPGMREEITRRCEACPECQRVQER
RPPRAPLQTMPIMEVPFDRIALDIVGPLAKSSAGHQYILVIIDYATRYPDAIPLRSATAPRIAEELLKWISWVGVPREII
TDQGTNFMSGVIRAMCQVLKIRQLRTSVYHPQTNGLVERLNGTIKCLLRRCAQENARRWDLILIPLLFALRDTPQASMKL
SPFELIFGHRPRGLLQEVREEWESSGRPGVGVQRHRQEMIERLEKARRLAQENLAEAQQRQRREYNKGARVRDFRVGDKV
LVLLPTMADKLLTRWQGPFEIVRQAGPVDYEVHRPGHKKERQIYHVNLLKAWREPEGWMLSPEEPREELGPETGEPQERA
DQDGQLTHGSGLNEEQRRQLRRLVARFKEVFNERPRWARGVQHEINTPKGVVVRERWRPIPHHLREEVRQELRKMWAQGV
IVPSRSPWRSPMVIVPKGDGTLRICIDFRKVNEIARFNAFPMPHVEELLERIGRARYISTIDMVKGYWQIPMAKSDQQKT
AFGTPWGLFEFTRMPFGLHGAAATFQRLMDHMLTPHTMYAAAYIDDVVIYSQTWEQHLRHVGAILQEIRRTGMTINPKKC
ALGVQETNYLGFRVGQGIIRPLASKVEIIEKYPPPQTKRQMRAFLGLANYYRRFIPRFAEKAATLTDAIRGKIQGPIYWT
PEMGKDFEDVKRALCSDVLVITPDFSKTFILQTDASETAVGAVLCQEQEGIERPIAYASR
>Gypsy-21_DYa#LTR/Gypsy 27-4928 via tfasty with Invader3, 4 frameshifts and 1 stopcodon. [Drosophila yakuba]
MNQADLNKFSVTQLKRWLSALGLPTQGIKSELMARLGQVPLVQRGNMPEEDRPGTGPQSIIDPENETNSSQEGVSENVPE
QNELLGIITQLRTTLITQENALHQAETRSALQKQQLELLSAAIHTQQQNETRAGTHTQQQETRAATHIQQQEETRAATNT
QQQEETRAATHTQQQEKRAATHTHNSKKRRVPPHTHSYNKSRQISNMYDLRPTSLIRNLPGGNADNSNISTNTIDYGSSG
NVNISNAPTIAIGNGLGGNPDGNQEERPFTRAGSTVSLSHAKEAAIDFEGNICARNWVEHLKNIGLIYNLTDDCLRMLFV
TKLKGNAQRWLHVNPTRMLETFERLCEQLIVAFGETASKSKLRRRFEQRKWQRNERFTMYFEEKKMMSQTVNMDMEELLE
HLIEGIPSASLRDQARIQRFANPEQMLLAFANVRLPQQAGSYVPKKSTSEAVVNNLRCRNCNSKGHFAKDCRKPARAPGS
CFACGEMGHFVGECRLRKSNINSNTNNYVRRLKIFFVYFTNLPIIAECLIDSGSAISFIKESKIPVEVALKAVNQVYHGI
NKSQLxIFEKTLCFILKEKIKIQFEMVVVANESMRYDVVLGRDFMNQYGLSINLDTLGVNEDINNMIKIFGENDQQLANA
VVANCDVSETVRENETLEEKLLGNETVTENEIVREKLLGNKTVTENETLGYASFKEKFLKNETFTEKFVESETLKRKLLE
NETFRKKMSEDTTDEIQRSERIEILGDNFETEMLNIKFVDDQFLDYNCGCDVSYETTCKFVKMFEESYVNAKRPDSPFTR
CEMKISLEKSKPFSCSPRRLSFSEKEQLQKLLDEYLDKGIIRNSDSEYASPFVLVKKKTGDLRLCIDYRKLNKILIKDNY
PLPLIDDLLDKDLKNGYFHVFVDNDSIKYTSFVTPLGQFEFLRMPMGIKNASAVFQRFVNKIFADLIRENKVIVYMDDIM
IASANMEEHLKDVFIRLVNNKLELRMDKCEFMQSSIKYLGFLITKEGIRADDKGIEAITNFPIPGKVHNVQSFLGLCSYF
RRFIKDFSTLAKPLYDILRKDKEFVFEQRELDCFLNLKKKLIEAPVLAIYDHKDEVELHCDTSATGFGAVLMQRKEDGKL
HPVFYFSKRSSETKAKYHSFELETLAIIYSLRRFRIYLQGRHFKILTDCDSLTLTLNRVELNPRIARWALELQNYDYELI
HRSGTKMQHVDALSRCNILIVETTSFEDNLLICQSKDLKIQKIKEDLEKNQHKLFEMRNGVVYRKTNDDRLLFFVPEEME
NHVLHKYHNELGHIGRDKMIDAISRTYWFTNIKEKCKDHIENYLKCVAFSPNTGKSEGFLHSIPKGDKPFELLHIDHYGP
VAAGRANKHIFLVVDGFTKFVKLYTTKTTSTKEVLKALSDYFRAYSKLKCIVSDRGSWFTSNEFAQFLTESNIKHLKIAT
GSPQANGQVERINRTIGPMIAKLTEPENGIHWDNVIEQVEYAINNTVHRSIKQVPSKMLFGVEQKGQIIDEFRERLEEIN
DTVQVENLEEIRKRARDNQNRAQAYNETYYDKTKKKPKYYRKGDYVMVKNFDSTAGVARKLIPKNKGPYVIDKILRNDRF
LLKDVEGFQVSRNPYKGVWSAQNIRPWIGKRTNS
>Gypsy-21_AMi#LTR/Gypsy 75-4202[Crocodylidae]
MQQPVLAHAELLTQAIQAIGQVLEVQQLQGAHQQEWMQRNAALFKMPRMTKEDDPEAYIEAFERTAIQTGLDRGQWGHHL
GALVIDQAQAAYRALSREEARDYETVKAAILYRLEISPESHRQAFRARKTKEARRPRGLLQALRDSLNKWLPAGKFDRAG
VMDQILLEQFIWDLEEDAQRWVRRHQPQTSEEALRLAEAFANSERERGYGRGSRGPKEGQPSEGERRMGPRRGPPKGVVC
YRCGQTGHISRECGMGLSELSRAPTGYPPSRDRGKEVERGEPMDCSFGSATQDGGWNRPVVTAWIGDRAVKATLDTGCSQ
SLLRADLAPQTGWKSAGSLTMTCILGGEMRFQTCYVPFRVMEFSGELRVGIAPTLACEMILGREWGPFYTVLERVRATEE
ERNRIRRGEGWAGEGPARRDEITSGGIDLEQFVSAAQFRRAQNEDPELQRMWDTDPGEGSSRSRPGFEVIGGLLYRVQRG
EEGTMQGRQLVVPSSLRQAVWRLAHDSPMGGHLGRNKTRARLAQEFFWPRLQEDVERWGAACPECQRAQEWKPPRAPLNP
MPIIETPFSRVTLDIVGPLPRSHNGYQYILVMVDYATRFPEAVPLRSITATRVAEELLKWIARVGIPREILTDQGTNFMS
GVMKALCKTLGITQLKTSVYHPQTNGLVERLNGTIKRMLRRCSQEDPRRWDTILTPLLFALRDAPQESTQYSPFQLVYGH
SPRGLLQIIREEWERPMGLGVSAERYRKELQDRISRAQRIAXRNLRSAQGIQERRYNEKTRTRTFQPGDRVLVSLPTSSS
KQLAMWQGPFTVVRQVGPVDYELLKPGHRRERQIYHVNLLKEWKTPQGWMALDXDTREDLGPPCPGLGGPREEGSVQMGK
ELGNQQQQELLALIEEFRAVFQEVPGRVTGVEHEIRTPQGALVRERWRPIPQRWQQEIRQEIMKMQEQGIIRPSRSPWRS
PIVPVVKPDGSLRICIDYRKLNALTTFDAFPMPHVTHLVEKIGEAQYITTLDLAKGYWQIPMRSTDCAKTAFGTPWGLFE
FTRMPFGLNGAAATFQRLMDNLLAPHAAYAAAYIDDIIIFSASWQQHLKDLRAVLGELRAAGLTANPKKCKLAGKETAYL
GFRVGRGTIRPLTDKIEAIRQFQEPQTRKQLRSFLGLVNYYRRFIPCFATLSTPLTDALAGRSVAPLKWTPEMRKSFQDL
KEAMHHDVIVHTPNFNAPFVLQTDASGRALGAVLLQKHGQEERPIAFASRKLSRAETRYATIERECLAIRWAIEYFKYYL
MGREFVVVTDHAPLQWLTQKQSMNARITRWALALQPFKFTVVHRPGKDNFVADFLSRWGGADNPEEGSGHIHGEEQQVVH
AVTRENQTPRGNLRGE
>Gypsy-21_NVi_gag#LTR/Gypsy 1023-2654 [Nasonia vitripennis]
MLNGMEDDVGNWVLNLTRGELRQTLSSLRLRQDGNAEDQWVRLHKWLMGEYDPSDFEPTGELGAAAVKQERAESRRSFLE
TTCTEEKRIGINPHPLEELISDPGTQGRLQRTLDNAVEENVIVPENVHEEAGADKDEFKDCIAGVDGQEYTMPPGMVDYL
EKMQRTVRSLQEEVSQLKQKRTEARASSTRTDGESRQPPPRVTFSDATNFETSTPATGARGATPRNRWREWREAAERHSP
APNRGTTRTFVRDIVTIVRKWDLRFSGSMTDRIDRFLDRLESNMRLAQMTEAEKMESLPHVFTGVAAEWYENNKDNWRCW
EEFRTAATRWYGTNRRFQQRLASDAEKRYQGAHEPVRDYVTCLGGMMKEMRPRPCLEKQLDLLHKNLKPELQRLTPRMDC
YDWDSFREKAEEAETVLASSQEYRAPPPPEQTMLASLAYVSPTKRKPATAPPKVAAVEVAQANDGNTQLAEMFSKMLDER
LAKFEKKIRSESERSNKYEQKRHSTHHNKHQGNKPKSEALCYNCNKPGHFKRDCPEGKEEASA
>Gypsy-22_DR#LTR/Gypsy 605-5665 [Danio rerio]
MAQFFSHSTSTYVDIDAPDAPTISTPVWSPPVQTQTLSGLPPHDQIMHNISPVHSFPSHATPVQTLPTALGGHILMQPLS
LSQEHVSMQLCTSADVSSPSTMEQHDLPGNLPTPRREIQQVSSYVQGNLDNLMVTMKKQEKCLHELTQKLKTSSSQHVNQ
ITTLTAKIESNKQEIVTILTGAKQQEAADADQLVKAVQLMLATEFQKFESTLTSAVVDKVEKLRRDVHHDLKSIQQTLQG
SLDQLTTNLQQCEEKISKCQTCVTQLKKDLQVHNVKDVEPQTETKAAPVTSTLSTETVSTLPNTMVKSDHLKLTFPTFGR
HTDDTDPLLYLTKCQDFLALHPLTDADLLATFRTVLYGTARDWWEVSRSNIATWKEFESAFLSAFLSEDYEDELAERVRT
RVQGDRESIRDFAFTYRALCKRWKSTLTETEIVKMILKNIKPYLASQLRSRVNTVEDLVKLGYLLERDYEEQRRYESRMA
HKQASSQKSFSNRPVEKQPIQCWRCSGPHPPGNCPMYLTPPSQQSSTQHHPNHGKSFHAAKSGGRPTNIIVAASETPQST
KEVPNVFLPSTTMSSLAIPQQLVVPISIGSWFGKAILDTGASYTLIHESLMQHFDTSAQLQNWSSGPLYLANGKAEIPLG
WLNITIQIHGKSFVVPAVVLPSQALAYAIILGLDFIFFSGLKIHVSERKYSFTSDPTEEHPFQPGYASEPLVKMTPMTEK
KTLRKNKLNLTLLSAVPPPQTSLGMLQTDHVDDATQIWNAVSEAQLPKEEKQQLLQILQNNPRVCTQRTGKTKLLQHRIY
TTSQVPIKQKPYRLSPVKQQVMEEQLEQMLREGIVEPSHSSWASPVVLVPKKNGKLRFCVDYRKVNAITENDAYPLPNIT
EILESLSGSTIFSTIDLNSGYWQVMMDPDSKAKTAFIVSDGLYQFNVMPFGLKNAPATFQRLMETVLGELRRKICLVYID
DIIVYSPSVTQHFCDLQTILHRLEAAGLTINLEKCKFFLPEITFLGHVVNAKGITADPSKVEAILSFPTPNNLKEVQRFL
GLAGWYHRFVQNFSKIAEPLNALKKKGQVFKWTAQCQQSFDQLRSCLTSPPILGHPDLKIPFIVYTDASDTGLGAILTQR
KDPGSEEVIAYASRTLTGAEVNYTATEKECLAVVWALEKWQHYLEYKLFTVVTDHSALQWVMGSTKTNSRLIRWVLRLQK
FNFIIEYRKGKLNVAPDALSRSPLTTISPVTAVYTKQQTDQHTELPVSDVVLWEEQHSDEETTKLLQAVAEEPNQLEQYE
VIEDKLYHKTYLKNDQVHYRVYVPNRLRPTLLHHYHSHPLSGHHGIYKTYKRIQAVAFWPGLWTDVKRHVKECVKCQTIK
YDNQKPAGKLQSTITSRPNQMLGVDIMGPLPRSTQQNEYLLVFVDYYSKWVEFFPMRQANAQSVAVIFRREILTRWGVPD
FILSDRGTQFISSVFKNVCEKWGVTQKLTTAYHPQTNMTERVNRTVKSMIASYVDDNHSKWDQFLPEMRFAMNTAIQETT
GVTPAELQIGRKLHGPMDKILHGQNLIPDNTSYDVVCHIQQLKSQVQENCRRAQQRQLRNYNKKRREAGFKNKDRVWLRN
FPQSSAQHKFSAKLAPKWKGPYRVLKQLGPLNYRIALEETGEDVRTVHVCNLKECFPTAEELEVQEKKRLRELFEETSEE
EEFFGF
>Gypsy-22_Crp#LTR/Gypsy 83-4179 via tfasty with GypsyDR1, 3 frameshifts. [Crocodylidae]
MEHQQVITVTESLQQAMNLMAQVLQQQQQQAMRQTSLQEHMLQQQVWAQRGPWDFRMPKMSREDDPEAFLETFERAALAA
GVERSKWAGHLGVLLIGQAQAAYRAMSRGDAQDYDKVKAEILRRLDITPERHRQAFRREKSGEARAPRILWQHLADELNK
WLRPESASKEEICDQILLEQFISALRRRYPEVGEVPLPPSSREALRLAEQFDMAQGDRRKSSGTKGKVSTARQDKESRGS
RRGSPTSLTCFLCGRKGHFVKNCPQGLRPRPAKGTESPDDRRGLEEPTETEAMDCGVGGHGTEGIQPLPEIRVWVGGRPV
TAVVDTGCAQSLVRPSLVEWQQARRCPGVTCYVFISRSVCERRLLDVQVGGTRRQMPVGLDEGILYPMILGRDWPEIYEI
IATLQQPEDPRDGLAGTESEGTDEAEMEALTNTSRFREAQEGDQELLPFREMEAERLATQVRPPERERPIPRVELRRGLL
YRIKAGRAEGEEVAQLVIPQSYRKPLLRLAHNNPLGGHLGKHKTEARLARWCFWPHMYEDIERYCKACQACQRVSTYKPP
KAPLQSMPVIREPFARVALDVVGPLPRSAGGHQFVLVLIDYATRFPEAIPLRTVTGPKVAEELMKWVARFGIPKEIITDQ
GTNFMSSVLGALCKVLQVRHLRTAVYHPQTNGLVERFNGTLKGMLRRCTQAEPKKWNLMVPPLLFAIRDAPQASLGYSPF
ELTFGHRPRSLLDVVKEGWEAEPDPGRGASTHVQELRERLRAVSEMAQHNLEQAQDKQKERYDSQAKTRELRVGQKVLVL
LPSSTSKFVASWQGPFTITKKAGPVDYEVLRPGAKKEQQIYHVNLLKEWHEPEGLLISRDPETAGSGAPTSSDKGNDKPR
DQISVGKQLQGNQLSQLKELIGEFKDVFTEQPGRAVGVEHKIITKEGQIARERWRRIPYHRLQPIKKELEKMLEQGIIAP
SRSPWRSPLVAVEKPDGSLRLCVDFRKLNAMSQFDAFPMPRVNELVERIGQAKFISTLDLSKGYWQIPLRKEDQPKTAFG
TPWGLFEFKRMPFGLNGAAATFQRLMDWVLAPHQGYAAAYIDDIVIYTETWEQHLKALRAILRELRQVGLTANPKKCAIG
KRETKYLGFLVGQGRIKPLMDKVKAIRDYVAPTTKKQMRAFLGLASYYRRFIPGFAEIANPLVETTKGRKTGNVEWNERR
LKAFGDLKKALCQDVVLHTPNFDLPFTLQTDASAYALGAVLSQEVEGAERPIAYASRRLNDHEKRYSTIERECLAIRWGV
DYFRFYLLGREFKLVTDHAPLRWLNTAKTDNARITRWALALQPFQFRVAYKPGRDNTVADFLSRCGEEDRGIVRRRAGTE
EGRSNA
>Gypsy-20_NVi_pol#LTR/Gypsy 3679-8170 via tfasty with Gypsy9_AG_pol, 3 frameshifts. Artificially splice out pos.4157-4768 which seems to be a foreign insertion. [Nasonia vitripennis]
KPSRGEWTRSNKANALETNTDTANLIKTRDTYEKNVLNTEKSEKCENEANITDIEKLEVYHIKLDDRLEYIEITNPYTIK
SCSLLVDSGAQINIIKLGQISPEAQLQDKKILLTGITSKQIKTLGIVKLPINNKYFDFHVAPEEFDIPYDGILGIKLLRE
RLQEEQNSQEISAKAKECDFKDILTTMKETGEKLSKAEEKLMFDGKEYQYISFDIDYIPEGAQLVDELGIEESLILNIEA
IDAFEKTKQGKLKKPNRQEVLRKKLQMKNGGKRNQERIERITNKYPDVFWIEGDELGTCNVEQHEINLTTDKPIYVKQFP
LEHKKKGIAISETKKLVINKAIRNTKSPFNAPALVVPKKELVTGEKRYRLVIDYRALNEVTIADPYLLPNINEILDLIGN
KKYFDVLDLKSGFHQVKMRPSDIEKTAFSVQPLGRFEFLVLPFGLKNSARTFQRVINTVLAEYINKICYNYIDDIIIFGD
STEELDERFNLIAEALKQAGLKLEPEKCEFGKTEVCFLGHIISEAGIRPDEKKIEAVKKFPIPKNVKGVRQFLGFANYYR
RFIKNLADITKPLTILLQKDRPFIWKEEQQKAFDKLVKMLCSAPVLQYPQFDKPFIITSDASQYALGCVISQGEIGKDRP
IAYASRVLQPAEMKYATYEKEALAIMYAIKTFKSYIYGNKFVIVTDHKPLVWLKSADNNERVQRWRLKLLDYEYEIIYKA
GKQNTNADALSRNPVAEAGICVITRAQKKREENKIRQELTNEDKIKIVNEQKTKINKKKLKIKNRKRRKIKGPKNRIACD
VEKQESKQKNVVYSKNAIQFRKDNVIHLINNNGESLDENTANLLKNIYWDKSLDSNEIEIINKGNNKIFVLCLNTAESAI
TVKTNLINLFKLLRTICLQKNYAIFSISKDIKITNISWDEIEEILKDIFNETNIKVIICLNNIIYIDIDKRDKIFEMLHA
TKIGGHSGVNRTYNRIKDKYYWENLKVDIQKRIQRCEECQRNKLKRIKTKQPMIITDTPLKTFDKISMDIVGPVNVTKNN
NKYILSIQDQLTKFIVIVSLPDQTAESVADALIKKFICIFGSPKLVLTDRGANFTSKLIKQIARRFKFKKVETTAFSPQS
NGSLERAHHPLYEYLKNFSSKKMEWDELLEFAQFNYNTSVHTSHKFTPHELVFGYPAKLPSSEPLKKNEQLLTFNGYLEN
LVAKLEEITVIARENLINSKMKSKEYYDRYVNPIELKIGEKVWLIKEPKPGKFEKNHNLGPYEIIKVNENSNVTINYNGK
PKTVHVNKLSRCHT
>Gypsy-18_NVi_p4#LTR/Gypsy 12435-13427 Vague similarity to Gypsy7-NVi_p3. [Nasonia vitripennis]
MIDVIYLQTKEYTMDFRPRTNISMFCDVDIPLSNIIREFERVGEPQNARVEKHRYERETKKITLSFNSEREIAKAYELRS
LLAKQNKLKRNSKRAAPYQTPMITTGPKTAIGDLIDLTPKEEPTVRSEVHVVNQPSTPQPIRNRLFCLLPWDGNDREKDE
MFFRHFAQFGTLAYYETVRDKKGRLSYGYVQYFTQEDTKAAKEESDPMYKATFAEPRRLPRAAQGTANTKFHERCKQMIE
VEIYNLHEITCKKQIAWTQDNVSEDPLSKLQPLQETIMELKEKIAKLENQKENNRHPPTPRTNRVSHERPKTPEATLPDL
DENDSSMSIE
>Gypsy-18_BG_pol#LTR/Gypsy 1173-5003 [Blumeria graminis]
LSPLESRLKGNPYCLTLSSVATGGNVRDKMSHFVVKCSIKNKKSINVPTFALIDSGASAHGFVDAEFARIQDLEILPLFH
PRSLKVFDGTDSVHGKITHMAQATIDIGGHLERIFLFVTTLASFDVVLGLPWLQFHNPKINWSQGLLTFDRRTCENHSKK
FPTTVHAISESDIDQYRKQFSKSRHSEKLINIEHCNYQDFEDYADRENLKIMSVSIEDIQEALKEKPSVDPAEKLPEAYH
EFFSVFSRDEADKLPPHRPSDHQIVLKPGSEPPWGRLYGMSREELQVLKKYIQENLEKGFIRPSSSPASSPVLFVKKPGG
GLRLCVDYRALNDVTIKNRYPIPRINETLSLLGKSKYFTKLDVISAFNRMRIKEGDEYLTAFRTRFGLYEYLVMPFGLAN
APSSFQNYINDTLRGYLDEFCTAYIDDILIFSQSLEEHQDHVKKVLARLMKAGLQLDIKKCEFHVEQVKFLGLIITTAGI
KMDPSKLEAIENWETPKNTKDVYRFIGFANYYRRFIHKFGSIVMPLTDLMKKDVPFTWGSTQETTFKNIKSKFKEDVILQ
HFNWDRPARLETDASDRGTGGVLLQPDNLGNWKPVAFFSRKMSPAESNYEIYDKELLAIVQAFEEWRPELEGSPNPVEVI
TDHKALEYFMKSRLLSRRQARWSEFLSRFNFKICYRPGCQNGSADALSRPSGTQDLASKQFLEQRLLKPINLSPGMGETN
LLANELEIIDQSENGVESSGSSRPDTSLLVSGSPSSFFERIRRLTLSDESINAVIKALESNRIPRFMKFTLSKCEKRNGF
LYYRGKIVVPQCDQDKTLTAEIIQSHHDTLVSGHQGIASTYTAIFRTFFWQGMLQQVKKYVRNCHTCSRIKVSREGNQGL
LCPLPVATERWRHVSMDFIVDLPLSKDWNDNEFSNILVVVDRMTKQTHLIPCNDLSSRNTAYLFYKECFRLHGLPDTIIS
DRGSQFTSEFWKWLCKLLQINHCLSTAFHPQTNGQTERMNARVEQYLRAYVNYLQNDWVRYLPSAEFSMNNQDSYTTGVS
PFLAVYGLHPRSGSELSAPLSGPAVPASIQFQRRDAEELVENARKIDKFLIDNITYHSAEYEDQSNKFRKASRLFRVGDK
VWLNLKNVKLLRPCRKLDFKNGGPFEIIQTIGNYAYRLKLPPTIKIHPVFHVSLLRSAAKDPLPGQISGPPPLLEAEGND
PEYEIEKIIGSHWVDGSLHYLVRWKGYGPEDDWSIPASQADSFKELVRQFHELNPSEPNQPHGHISAKKKKKKLMKN
>Gypsy-18_NVi_p5#LTR/Gypsy 13604-15277 [Nasonia vitripennis]
MDQVLKNIVTSIVFDEVLDHVTICFDPAGKLPMVMKLLNSYGPNNTVTFEIIPRGPHHDSARLTIKYRTRTSATRLRSDY
KTSRTEDRMTVEQRVEAPTDSDSSDTDDEHSSSDSSTTDGTDGTDNTSDTPESDANDENDEVILNSDEDVPQQDNDNNED
NMNSDSDNATGNDNDHIPDNNDDNYGSNDIDNADNNDINSDDNVNDNGYPLQYNPQNNVELLKMNLTDAYTITAIYRGDT
IDAEALFRQYGPCHTEHYMSTTDDTKAISTRYQLDRHARKIINLYRQYIQRTDEDVQGLRRQEREQGPPTTEYVRSDDTI
CVRVPRTVSKQELTEIFATFGEIADIRRIKPNDEDERYTAFIQYRHKDSAYKAVTETDNTYLPKWAYNRRQRTTKPATTQ
ENAQERQRTEGPQEPAQRQRRWTLDPANNTKLYVLAPPDTTQQEFRADFIKYGEAIQIELTNGKKENNEKVGYVIYKDKI
DAIDAKLNGPRKYKIDWKLTPQTTETLLHFTCGDQIPIQSFTDHTRDCTTTTLRRRLQDKKKRTTEYQQTSRRETEC
>Gypsy-20_DR#LTR/Gypsy 1813-5758 via tfasty with Gypsy-17_DR_pol, 1 frameshift and 1 stopcodon. (misses the C terminus) [Danio rerio]
FKPVAAPAVGHPGADSHFTRPTLMVHEAVNHANERQGNYGFRDEFLPHGLVGHRCIASVFVEGIECESLLDTGLQVTTVS
ETFYLTHFSYLPIQPIHALFEVEGAGGQHIPYLGYIQIVITFPCTVLGVEVELTSLVLVVPDCHFNSRVPLLVGTNVLDR
LYQQGIDKKGSKFFQRASGDYALLFQYVAQNYENGNKSFQVRASGKKHITIPANQMICITGQVKTRKNISKPLFVLEQPE
TFPLPGGLLVENALVNVPFHACSKIPVTLKNMTEHDITLHPNRVIADMAAAHVLPLKPEVSSCSNQVPSGKSVFNLDHSP
IPKELKERIIDKLNSLKDVFAIGELSYGHTTAVKHHIRLQDETPFKERPRPIHPCDREAVRQHLWELLEAEIIRESESPF
ASPIVLVRKKNGQIRLCVDYRKLNLRTIKDAYALPNIEETFSALSGSKWFSVMDLKSGYYQVEVAEEDKHKTAFVCPLGF
FEFNRLPQGVTNAPSTFQRLMEKCVGDLHLREVLVFLDDLIVFSKTLEEHEARLMKVLNRLKEFGLKLSPDKCQFFKSSV
KYLGHVVDADGVHTDPEKISALKDWPRPSTRRELKCFLGFSGYYRRFVEGYSKIAKPLNCLTAGYCPPRKSGKIYKREKP
NTPVNPNASIAEEWTVECENAFRTLIDGLTSAPILAFADPQLPYILHTDAxREGLGAALYQEQEGKLRVVAYASRGLSKS
ERNYPTHKLEYLALKWAVCEKFGDYLYGTEFTVLTDNNPLTYVLTTAKLDAAGHRWLAQLSTYRFNIKYRAGSVNKDADG
LSRRPQNPPEEDDAFLEEERSIEALKRRLCEKTEDISNETLSALSDRHAVVLSNETYEAPGFVLAESLALNASSIPDSFA
TSGYETIPGMTCEDWYRAQREDSSLKRIISFIELGQKPNFRQTRLEPLEVKLLLREWKRLELRDGVLYRKWAANGAVLQQ
IVLPLQCRERAMKGVHDEIGHLGYERALDLARSRFFWPKMARDIENRCHTCERCFRRKANPQKAAPMESIRTTFPLELVC
IDYLSLEPDNHDIRNILVITDHLTKFAVAIPTRDQKAKTIAKTLWKNFIVYYGFPSRLLSDQGRVSEKNKARFDLKVRAA
ELMPGDRVLVRNLSVRGKHKLADRWERVVHTVVRRVSNGPVYTVKPEKGNGPHRTLHRDLLLPCGFLPASSEDQMPRTAS
AVKGKHKMRTRANTEVCEGDECEGQSSDEEESYFQIPIPEILTRSPFIEQVNDGSRSSHNVSAKLSDELNPHAIEFAPRT
TVVPRPEAIHPVTVPSREASKISSRKYTSISCARI
>Gypsy-20_BG_pol#LTR/Gypsy 1247-5101 [Blumeria graminis]
GKLAAPVRSRVQGNVGVFGELLDQIPPASEIREAVERLNSSPFLIDILINSTCYSTALFDTGCLPYAVFDRSFADQAHLP
RLPVTHRSLKLAKDGPQIPITEMTWATLDIDGRAERVFGYIVANLQYNIILGKGWAERNNVTYEAGKKFLTLGSGANAIK
VKESGWMERDELSGSMHQLRQAKNVTASIFAAEIRRGRKANKHLHLFSITIADINKALKKLDNSAVKQTVEEISNQLPQQ
LRHLAKNFLADEDGILPESKPGWDHSINLELDDEGKPKEPPSGPLYGMSRDELLVLRKTLTDYLRKGWIRASNSPANAPV
LFAKKPSGGLRFCVDYRGLISITKRDRYPLPLIKETLQQLSKAQYFTKLDVCTAFHRLRIRPGDEWKTAFRTRYGQYEWL
VMPFGLCGGPATFQRYINAVLQDILDEYCSAYMDDVIIYSDGDLSDHYKKVEEVIKRLEESGLRLDINKCTFATSEVKYL
GFVIKAGEGVTVDPAKIEAIKNWEEPTTVSETRSFLGFANFYREFIPKFSAIAQPLISLTSKQTRWSWDTKEKDAFEKLK
SMLSSAPLLALFSAEKETYLETDASGYAIGGVLSQIDEKNRLRPVGYFSRKLTPAESNYNIHDKELLAIITTMRHFDGEL
RSVENPFTVISDHQNLRYFTTSRQLSERQVRWAETLARFNFKIVFRPGSQSGKPDFLSRRAQEAPRDTSDERLQGRNIQL
FKNNLSTSSPEEFILNTINIVDFPDMTLKHIETDQNIMPSGKKLFEDKEIASLWDEALEKDQAFHSIHASVAAGQSTLPI
DLKLGVQMTDCSLDDRGALTRRGALWVPNWEPLRTTIIQRSHDSSITGHPGRDGTLHIVSRAFFWPQQYLDIRRFTRNCS
ICSRSKAWRQCPKGLLRPLPVPERFHSELSVDFMTDLPAQKEDDPKYLMVITDRLLKSCTLEAMNSMEAEACAERFLTCH
YRFHGFPKFITSDRGANWVGHFWTSLCKMTGINQRLSTAYHPQTDGSTERMNQEVLNYLRAFISYSQIDWSKLLPTAMLA
LNNRKSTVIGTSPFFVTHGYDAEPIQQTHTNSRATKSPQARARAFVDRIIQGQSMAQAAMTTAQQLMEESANHHRRPAER
FKPGDTVWLNLKNVETPQQKKKLSWTQAKYRIQKEIAPDVYQLDVPTGIHNRFFVDLLRHDPNDPLPSQKVDDTQPPPLV
DGKHPLYAVEKIVRAETINGRRKVLVFWKGFAEPTWEPRQNLKLTDAFKEFVKQYGDGDKVGLQLGMFTGRTLRNRTMRK
RKTNK
>Gypsy-22_DWil_gag#LTR/Gypsy 1422-2393  [Drosophila willistoni]
MDSGNASVSLPTTISTPNVTPTISSIANNPTSLSPTDILAFIKELPTFDGIPNKLQDFIVNVEEVIALIRGTDQTPYSSL
LLRAIRNKIVGRANDALKLSNTALTWDDIKANLIQHYGNKKSEAMLIRDLQNFPDSLSLGQLFYSILKIRSQLTDILQNT
NQNSTDKPKLYDEICLNTFLINLREPLKTLIKSKNPQNIKEAYEHCRVEKTFYSQKPNTSQNFRAQVTPYLRPQNIRNHP
NNNPYSNNRSQLFRNNSTISQPNINNQANNNYHNRNSTVNPFNSTGPTRNQLHNINEQQSSTELCNINDAGNFFETASEN
QQGT
>Gypsy-25_BG_gag#LTR/Gypsy 44-1680 via tfasty with Gypsy-45_BG_gag, 1 frameshift and 1 stopcodon. [Blumeria graminis]
MHFTSNFYIVTMSAPGDYPDSFLAEEDSVPQKESATTYHRTIKALQQATDERFAFTDRRLDGLENKLELKFDLMMKEFAR
LSTRLTDASRFEDSNISKNELFKPDHDAKVEEKQGHANHPTISKGEPNSTTIPPQHNPSDQARLPDGRINFFRTVPPFHN
NMTIQEKYVKDIWPKAKLESEIFYSDSGSSNNRNRVVLKPEWKLSRASNDVFSKLRNIQTALYLAMIPYNLWPQRVAIEM
DGDFFLVRRLIEQFDISWMQTLEAIFETLENHEILQEPVPEFARLAPYKDESYLDYAWRVRNGFFNLPMHIRGSDIVRGI
AIKNLKTYMPSFWSQIRENQRQMSTRELMDRAVRQAKHIAHCEIEKDIYKRSPExMILQHNSQSYYRQRSEPITNDATGG
NSRLKIVDPTTDDQLTATTSERAYVERTMNCYSCGKAGYISPNCPTNKKENTPNIRPAMETQHKGQKVTIKGTLFRENSR
VGNLFRTAGKRLREGKTSQGRKVYFVASDKDDEDINNSPVDRIDRDDDVDWEIDQLENEILEHTED
>Gypsy-24_ST#LTR/Gypsy 217-5277 [Solanum tuberosum]
MVRTRATAVATPTPARQGAPEPTIGAAPRGGAVARGRGRGRGRRPTRGRGQAPGPTRDRAVTPPPADEVAREGDEGEDEQ
IHEKEAPPQPTPEMINQVLTYLSGLSDQGQAPPAFSAPAPQVQGVQHAAVVAPRMDASLETGTFPRLTTGPIMTSDQHDL
FIKFLKLKPPVFKGTESEDAYDFLVDCHELLHKMDIVERFGVEFVTYQFQGDAKMWWRSHVECRPAKAPPMTWAAFSSFF
MEKYIPRTLRDRRRDEFLNIEQGRMSVAAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSDLQIPALQVAASAKSFQEV
VDFVIEVEGVKPDDFTKVSTFKKFRKGGEFSGSYSRGQSSGGYPPRPIQSSLQVSAEGPSQTSQPFSEFGGYLQSSSSSQ
RPTLDSRTCYGCGEAGHIRKYCPKQSQARYDQSYRSPAVRGRGGHGRGRHSGGRGGQGNGGHQFGRGGGQVGTTGAQPGR
GNGQTGDRAHCYAFPGRPEAETSDVVITGTLLVCDRMASVLFDPGSTFSYVSSSLATGLDLHCDLLDMPIRVSTPVGESV
IVEKVYRSCLVTFVGSNTYVDLIILEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGIDPLVWEGDYIPAPVRIISFL
RAKRLVSKGCLAFLAHLRDDTSKVPSIESVSIVREFADVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRE
LKAQLQELLGKGFIRPSASPWGAPVLFVKKKDGSFRMCIDYRQLNKVTIKNKYPIPRIDDLFDQLQGACVFSKIDLRSGY
HQLKMRATDVPKTAFRTRYGHYEFLVMSFGLTNAPAAFMSLMNGIFKPYLDLFVIVFIDDILIYSKSRKEHEEHLRIVLG
LLREKRLYAKFSKCEFWLDSVSFLGHVVSKDGVMVDPTKIEAVKSWVRPTNVSEVRSFVGLASYYRRFVKGFSSIASQLT
NLTKQNVPFVWSDECEESFLKLKTLLTTAPILALPVEGKNFIVYCDASYSGLGAVLMQERNVIAYASRQLKVHERNYPTH
DLELAAVVFALKQWRHYLYGVKCEVYTDHRSLQYVFTQKDLNLRQRRWMELLKDYDITILYHPGKANVVADALSRKAGSM
GSLAHLQVSRRPLAREVQTLANDFMRLEVLEKGGFLACVEARSSFLDKIKGKQFDDEKLSRIRDMVLRGEAKEVVIDEEG
VLRIKGRVCVPRVDDLTHTILAEAHSSRYSIHPGATKMYRDLRQHYWWSRMKRDIVDFVAQCPNCQQVKYEHQRPGGTLQ
RMPIPEWKWERIAMDFVVGLPKTLGKFDSIWVIVDRLTKSAHFIPVKMTYNAEKLAKLYIREIVRLHGVPISIISDRGTQ
FTSNFWRTLHAELGTRLDLSTAFHPQTDGQSERTIQVLEDMLRACVIDFGGHWDQFLPLAEFSYNNSYHSSIDMAPFEAL
YGRRCRSPIGWFDAFEVRPWGTDLLRESLEKVKFIQEKLLAAQSRQKEYADRKVRDLEFMEGEQVLLKVSPMKGVMRFGK
RGKLSPRYIGPFEVLKRVGEVAYELALPPGLSGVHPVFHVSMLKKYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVR
KLRSKEIASIKVQWKNRPVEESTWESEADMHERYPHLFVDSGTLSYPRLLLIVRGRTMGKLVSNVTTHLVVLSTRAFYFI
KDSSDRF
>Gypsy-26_CSa#LTR/Gypsy 55-3882  [Ciona savignyi]
MANFQVATPEGFDFDKPESWPQWSKRFERFRVASGLVSKSNVLQVNTLIYCMGGKAEEIFTALELTEEEAKQYAEVKAKF
DQYFNVRRNLIFERAQFNKRNQLPGEPIDQYITCLYSMSEHLEYGELKDELLRDRLVIGITDKGLSQKFQMDPELTLKKA
IDTARQTERVKIQQRKLLNANEEHIEEELIGAARAKYQTNKLTERREKTCDRCGWQQHLNQDKCPALNTKCYKCSKIGHF
ARRCRTKFVGEVFTCEYDVPNNGESKIFNPLCSAYVGASFTSTSRDKWMTEVGILNRKILFKIDTGADVSILPFTIYKTL
TKLRLEKSDRRLIGPDGKFVEVLGMIPSCRISINGHVSTQALYVTKGGKYPLLGKPAIEALKLLTYVSEVNVGLPLASWK
QRYPKLFGSLGKLPGEYNIEISKDATPYHIKNPRRVAFPLLAKVKSELEEMTKGNIITQVKRPTDWCAGMVVVPKKDGNI
RICVDFTQLNKSVKRERYLLPCVDEVLGQLAGAKVFSKLDAKSGFWQVKLTNQSRLFTTFMTPFGRFCFNRLPFGISSAP
EHFQSKMSEILCGEEGVVCEMDDILVHGRNQKEHDRRLERVLRKLQKCGMTLNSTKCEFSCNQVKFVGHIIDANGIRADP
DKIKSIVEMKEPRNVTELRRFLGMVNQLGKFTSTLADSSKALRELLVKSKVWVWGERQQRAFDGVKQMCASNSVLAFYDC
NRETIVSADASSYGLGAVLLQKHGATWKPVAYASRSMNLTEQRYAQIEKEALAVTWACERFSVYVLGLKFTVHTDHKPLV
SLLGSKILSDLPPRILRFRLRLMRFLYDVVHVPGKQLTIADTLSRSPLPDEPNFSNATESLMDDAFVMSIVDAIPESNRR
IEEIKQSVAKDPVCSQIILFCKTKWPRRSKLKEPLQLYYPYRHLLSEKNGILLYGSRLVIPTAMRDEVLGRLHEGHIGIT
KCRAKARESVWWPLLNKQIGEIIANCECCAKFVNHRSEPLLPIPKPTRPWQKLGTDLFEHKGETYLLVVDYFSRWIEVEL
LHSTTTVKVIQHLESMFSRFGVPDTIASDNGPQYASQEFKDFTNLYKITHLTSSPMFPQSNGESERAVQTVKHLLHKSND
LPRALLAYRTAPLINGFSPSQLLMGRRLQTAVPMSRKMLVPRWPNFNSLRKLEESAQHQQKRDFDRRHGVRPLPSLRVGD
RVIIRDNQKEGEVKSTHRLPRSYMIGTSGGGMYRRNRHLINVLPRTTIEQTNPQLTLPATPRRSKRTIRPRIIFSP
>Gypsy-26B_AMi#LTR/Gypsy 23-4208 via tfasty with GypsyDR1, 2 frameshifts and 2 stopcodons. [Crocodylidae]
MENPDLATYANMQSTAIGPTDVLGQNLQVLTQILDSQQQMLDRQQDWLRHSLASFKMPKMTRDDDPEAYIKAFEWHALMT
GLDKGYWASQLGALVVGKAQAAYRALSRDDAQDYEHVKEAILYRLEINPEHYRRLFRAKKGPDERRPRVLLQLLWDLLDK
WVSPEGQDREALADQIVLEQFQNDLEERTQRWVRQHTPRTCEEALKLAEAFTASEASYPRERRNPGSSLVAPKEPERRCP
LAGGLPRTPCVSGAGRTVISLGNARARQRNAGSPLTGRGPQQKGGGVRSLASRWTAGYAVGEENAAWSRPVVKAWVEGRP
VQATLDSGCAQSLVRSDLVQPQGRWKARPVKVACLHGETKQIERQWIRLRVMEHQGELLVGVVPQLACEMLLGxDWTPVY
DVLDRVRDTEVARRKIQNHEGGWAKQRKMRSQRTRQKSIDLNDFTSCLQFREAQEEDQEIRALREQAQSTRGVPALPPEG
LPRFEVRNHLLYRVQGDRQEETEGSQLVVPARFRQTIWxLAHASPTGGHLGWDKTLARVSRWFFWPGMGEEVARQCAACP
ECQKTRAERPTRAPLQPMPIIDTPFSRIALDVVGPLPRSSSGHQYILVIVDYATRYPEAIPLRAMTAPRIAEELIKWIAR
MGIPQEILTDQGRNFMSGVLRVVCRTLQIKQLRTSVYHPQTNGLVERLNGTIKWVLRCCIQGDPRKWDLLLPLVLFTLRD
TPQDTTKFSPFELVLGHRPRGLLQVLREEWEQEGGPSQEPKTYQREFQQRIRLAQDLARENMREAQARQKEKYDSHAKER
EFEPGQRVLVLLPTSTSKLLTQWQGPFEILRQVGPVDYEVHRPGHLQEKQIYHVNLLREWREPEGWVAFSETDNEDLGPQ
GLRRETEPSKEGTLVRIGEELSSVQRREAQSLIEEFREVFREEPGWVRNSFHAIKTPPGAIVRERWRPIPHHLLEAVRGE
IDSMLKLGVIRPSRSPWRSPLVPVHKPDGSLRLCVDYRRLNALAVFDAFPMPHVAELIERIGDAQYISTLDLAKGYWQIP
VAKEDQPKTAFGTPWGLYEFVRMPFGLHGTAVTFQRLMDRILAPHAEYAAAYIDDIVVYSQTWAQHKRALQAILTELRHA
GLTANPQKCALAQKETKYLGFLVGRGTIKPLADKVEIIRNFAAPQNCRQLRSFLGLTNYYRRFVPHFSELATPLSEALKG
RKTGAVRWTEEMTRSFKMLKRALCEDVIIHTPDFRKPFILQTDTSEMAVGAVLTQEEGDNERPVAYASRKLLPAEKRYAT
IERECLAIRWVVDHFRYYLMGREFKLVTDHAPLRWLSTAKTDNARITRWALALQPYKFHIIHQPGKTNTVADFLSRCEGE
DQTGDQGNQARGLTSPTGTTQNGNKGAPQGILRGGV
>Gypsy-26_ST#LTR/Gypsy 204-4856 [Solanum tuberosum]
MASSSDRPMEAAREGSGASVSQPHALEGVGEHFSNQYVPHTSGSEVGNHQGVRAGPHPHMSRGTQAMNPPFQQMAEFFHH
MAESMHDPNGINFEKMRKMGGVEFEGTVDPTDAEQWLERMERVFEQLECSDVAKFKYAISLLQKDAYDWWVSVPNAKVKP
PVLTWDDFLKEFRMKYVPPAYCDAKKKEFLNLRQRGMSIAEYQQKFLRLSRYAGGIIKEEKDKCRKFEDGLNDSIRKNVA
ILQHENFCKLVSAAFTWERLDKEEASRNENKFRKPRPDFGGPSKRGRFDNSKAGSDNRPPQQKQNRSEFSTASTPNYGQG
KPRVPTCPQCGKNHYGTCRRASGACFNCGSFDHKVKDCPNPNNAPSLRTEGSVHKPSINPPQTNRGARPKNTQAAGTSGA
NQASGQRATARAYAMRQRDDQDGQDVVVGKFHLFGLCVFTLFDPGSTHSYICSSLVLPENVKSVRLNYDVLVESPLGYQV
VCNRVYQDCPFVIQNLVFPADLIEMPFKDFDVIIGMDWLYKYHAVVDCRSKHVTFKDPTFSHIIVQGERSLTSSIISAAL
ARKLMRQGCGAYLAHIVDTQLKSPCIKDIPAVCDFPEVFPENLPGLPPEREVEFPIELIPGSTPISITPYRMAPAELREL
KSQLQELLEKGFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNRITIKNRYPLPRIDDLFDQLKGAKVFSKIDLRSGYH
QLRVREKDIPKTAFRTRYGHYEFLVMPFGLTNAPAVFMDLMNRVFKPYLDQFVVVFIDDILIFSRSSEDHDKHLRIILQI
LKEKELYAKLSKCEFWLDEVAFLGHVVSTEGVKVDPSKIQAVVEWRPPKSPTEVRSFLGLAGYYRRFVKGFSIIASPLTK
LLQKEVKFIWDDKCQESFETLKSLLTQAPILTLPIEGKEYVVYSDASHNGLGCVLMQEGKVISYASRKLKPHELNYPTHD
LELAAIVFALKIWRHYLYGEKCHIFTDHKSLKYLGTQKELNLRQRRWLELIKDYDCTIDYHPGKANVVADALSRKSFASI
SLSPLPLLLELRAMNVCFTLDSNGSVIANLQVKPILLEQVKEAQKLDEKLVKLTREVQNGEKLDFTLTEDGGLFYQNRLC
VPNDDKLRREILNEAHTSPYAMHPGGTKMYQTIKEHYWWNGMKRDIAEFISKCLVCQQVKAEHQVPVGLLQPLSMPEWKW
ERITMDFVSGLPRTQRNHDAIWVIVDRLTKSAHFLAIRMDYSLERLAELYINEIVRLHGIPVSIVSDRDPRFTSRFWGSL
QEALGTKLKFSTSFHPQTDGQSERVIQILEDMLRACIMEFEGSWDKHLALIEFAYNNSYQSSIGMPPYEALYGRKCRTPL
CWSEVGERKLVGPEIVQQTEDKVKIIKDRLKISSDRQKSYADLKRRDIEYQVGDKVFLKVSPWKKIMRFGQKGKLSPRFI
GPYEILERVGPVAYKLALPPELDKIHNVFHVSMLRRYRSDPSHVLPVESIEVNPDLTYNEEPILIQAREVKQLRNKRIPL
VKVLWRNHSGKEATWEREEDMRTQYPHLFRD
>Gypsy-24_DAn#LTR/Gypsy 63-4565  [Drosophila ananassae]
MDVTNASIAQLKKWLSVLQLPTTGTKRELILRLSKMSTESSNYLELVNHQDEDGDGSNVEDEDEEDLDLENNGNENDNDD
EAGGEGNDKAGGEGNDKAGGEGKIGGKNEIKVGGDQSRKDGDKRSNKDGDGSSSKDGGENNNDDGGEGEDKVEKCACKDR
NKASSSNTKAGAKEEVEKGNAEKSKFLEFCNPSIDVSLGMATQVVPEFSGETCARKWITQMKNIATIYGIGGQYVKMLMI
SKIKGKANVWLHANPERIMLPLEELIAELISMFSDKVSKLEARRQFENRKWSSGESFGSYVDDKVMLGQRISIEAEEMIS
RIIEGIPNQGLRNQAHIQCFENVALIKRAFAEVELPKSYGDRKETAVNKDEKDSKDTRCYNCNAKGHWAQECRKPRREKG
SCYACGEMGHFVAKCQKNKIKNEGKNNYVRYFEIYFNDNTNTKLITECLIDTGSPISFIKISKVPEDTCKIPVLSSYHGI
NESCLETYGRILCYIKKKVNKIHFHLVVVANKSMSHDVVLGRDFMEACDLNLNLDTLKLVTVENLENVKNSNDVSDEEKI
ISDVDVNKVSGESRIISKEVIVSHEPKIRNAVRFREATEVDINIVEKELLNIDIEDESVEYKIGEQVDYKVRQQFMKIIE
NFYVNKQRPKEPEVKCEIKLRLDDSKPFSSSPRRLAYTEKEKLQSILDEYLKEGIIRPSESEYASPIVLVKKKTGDLRLC
VDYRKLNKTMIKDNYPLPLIDDLLDTLVNKTIFSKLDLKHGYFHVFVENESIKYTSFMTPLGQFEFMRMPMGLKNAPAVF
QRFINKIFADMIREGKVVIYMDDIMIASKEIEEHLSVLKEVFERLARNKLELRMDKCEFLQASVQYLGFLVSSEGIQAND
KGIEAIRDFPVPNKVHGVRSFLGLCSYFRRFIKDFSRIAKPLYELLKKDSEFVFGEKELDCFEMLKKKLIEAPVLGLYYY
KDEVELHTDASAHGFGAVLLQRKEDKKLHPIFYFSKATTKDEAKYHSFELETLAIIYALRRFRIYVQGRRFRIVTDCNSL
TLTLNRIELNPRIARWALELLEYDFELVHKSGKLMQHVDALSRNTNICVVETVSFEDNLVICQAKDEKLKKIRMRLEKED
DKMFEMRNGVIYRKANDGKLLFYVPEEMEDKILYKYHNELGHLGRDKVMDAIVRTYWFANMKEKVVRHIDNCLRCVAFSP
KSGKEEGFLHSIPKGSVPFEIIHIDHYGPVDKGRANKHLFVVIDGFTKYVRLYATKTTNTKEVIIALKDYFRSYSRPTCI
VSDRGSCFTSEDFQKFLEDYNVKHVKIATGSPQANGQVERINRIIGPMIAKLADSEKGLHWDTVIEDVEFSLNNTKQRSI
AQMPSKMLFGIAQKGKIIDELRQKLEELDDTDNVRNLDEIRTKGTECQTKLQKDNERNYNEKKKASSEYKVGDYIVVKNF
DCTVGVARKLIPKHKGPFVIDKSLGNDRYLIKDVEGFQLSRIPYQGVWSSQNIKHWIGKRR
>Gypsy-22_Gav#LTR/Gypsy 47-4203 via tfasty with Gypsy-7_Gav, 1 frameshift. [Crocodylidae]
MQPAEMAPADLLGQNLQALTQIVGSQQRMLERQQDWMRHGPSAFKMPKMTSEDDPEAYIEAFERHAVITGLDKGYWASQL
GALVVGKAQAAYRALTREEAQDYEAVKAAILYHLEISPEHYRRLFRAKKGAEERRPRLLLQRLRDLFGKWVNLATCTLAT
LMDKIVLEQFVNDLEERTQRWVRQHSPESCDEALKLAEAFTAAELHYPREKRGPPPPVPATREAERRKPGYRAPGGDMVC
YHCGRMGHFARECPGRASERWRPHGSPRGVAESPKEPVQGEPMDCSFGAGGESPVWERPVVRAWVEGRPVWAVLDSGCAQ
SLVKADLLKDAHDCRAEPVRVSCLHGETQAIRRVWANLRVMEYQGELLVGLAPRLACDMLLGRDWAPLYDVMDRVRDVEA
ARRALRTREGWLGDPEEGEGTTEGDGDAVADLQDIASSQQFRQAQEEDPELQELWTQAKDEAHQPASVSDPGSRFEVRHH
LLYRVQPGGAEKEDRVQLVVPSCFRKAVWQLAHANPVGGHMGRDRTMDKISRWFFWPKMGEDVARRCAGCPVCQKAREDR
PPRAPMRPMPVIDLPFSRIAMDVVGPLPRSSSGYQYILVFVDYATRYPDAVPLRSVTAPRIAEELVKWIARMGIPHEILT
DQGRNFMSGVLQGVCQTLRIKQLRTSVYHPQTNGLVERLNGTLKKVLRRCIQGDPRHWDLMLPLALFVLRDAPSESLGYS
PFELVLGHQPRGLLQILREEWEQGPAVVSSPSKYQQAFQRRVQSARELAAGNLRQAQQRQKERYDLRSKEREFQPGQKVL
VLLPTSHSKLLTQWQGPFEIIRRVGPVDYEVYRPGHQRTKQIYHVNLLREWQQPEGWAAFREEAAEDPGPQEPSPGPGVP
EPLKGVRVSDELTTTQKREVGNLLEEFKEVFSEDPGWVRDTYHSIHTPPGAIVRDRWRPIPHHLTEEVREEVEKMQALGV
IRPSRSPWRSSLVPVRKPDGTLRLCVDYRRLNEVATFDAFPMPRVTELVERIGAARFITTLDLAKGYWQIPVRPCDRPKT
AFGTPWGLYEFVRMPFGLHGAAATFQRLMERILAPHAEYAAAYIDDIVVFTQSWGQHLRALRXVLTELRRAGLTATPRKC
AIAHKHTKYLGFLVGQGTIRPLEDKVQAIRSFQAPQTLKQLRSFLGLVNYYRRFVPRFSEIASPLSEALKGSHRKGVKWT
GAMLQSFQALKKALCEDVIIHTPDFDKPFTLQTDASEAAIGAVLTQRDAGVDRPVAYASRKLLPAETRYATIERECLAIR
WAVEHFRYYLLGREFTLVTDHAPLKWLSSAKTDNARIMRWALALQPFKFRIVYRPGKDNITADFLSRCDEGAGRDVDRQG
CRPPQRITGNGGARPTEPPQGSWRGG
>Gypsy-22_DY_pol#LTR/Gypsy 2532-5561  [Drosophila yakuba]
MIGNTLDVRPYAEVSILGRTVSGLLDSGASISCIGGTFADDLLNDQSQGLKPFKCSVKTADGKSQRVMGKLTTEIFFRNK
SEEINLYIVPSLSQNLYLGIDFWIRFDLLPSFNSNLAVSAVEDSMLRPLTAKQQKQLKDSIALFPSFSETGLGRTSVLSH
CIDVENSKPIKQRHYPVSPAIEKMMYAELDRMLSLGVIEESNSAWSSPVVLVRKPGKVRLCLDSRKVNAVTVKDAYPMPF
IDGILSRLPKAEFISSLDLKDAFWQIPLEPKSRDKTAFTVPGRPLYQYTVMPFGLCNAPQTMSKLMDKIVPASLKREVFV
YLDDLLIVSESFEKHIQTLKELAVNISKAGLTINVQKSKFCLKEIQYLGHVIGHGTIATDPEKLSAIVDFPEPRSVKQLR
RFLGMTGWYHKFIKNYATVASPLTDALRQKRKFEWSAEAQKAFEALKQHMCEAPVLHSPNFDEPFFIHCDASHTGIGGVL
VQLSTEGDEVPIAFMSRKLNQCQRNYSVTEKECLAAIMSIKKFRAYVEGHKFTVVTDHASLKWLMSQTDLSSRLARWALK
LQGFSFEIKHRKGTQNVVPDVLSRAFTQDLSALELDRFIDLQSDHFRSKDYEELKLKVQQNQSLLPDVKVMDSLLYRRTE
HAAGERIADDMVWKLWIPKELVPMVLQISHDHPLASHCGINKTLERVRRYFFWPNLVADVKAHVNGCEICKCSKHPNYSL
KPNLSKTGETQRFFQKLYVDFLGPYPRSRSGHIGVFVVLDHFTKFPFLKPIKKFTAEAILKYVEEELLHCFGIPEVIVSD
NGVQFKSHAFNRLLDKYNIRHSYTAIYAPQGNPSERVNRSVIAAIKSYIHPNQTNWDEHLSKICCSLRSSFHTAVNTSPY
RLTFGQHMVTNGSTYRLLRNLGVLEDRSVRFQRDDSFDLERSKAVATMRKQHQRNENSYNLRSREVSFVPGQEVYRRNFC
QSNFAKGFNAKLAPAFLKARIKRKLGNSYYDVEDTQGRYVGKFHVKDLKQ
>Gypsy-22_SP_gag#LTR/Gypsy 45-1244  [Strongylocentrotus purpuratus]
MARRRRKTDLEQEIRELQLELDEARLQIQHSSETDAQPLEEEVQIRSPAQPRAAIQLPHQEHFDGTRPWESFIFSFQNIA
EACGWNKNEKRFRILACLRGNAADFAFQQLSSDVTGDFDNLVAALNERFENRKTPASFVSQLEARRLGPKETIADYAADV
RRLTTFGYPSADVDTIETISTRHFLRGIGDQNMTLTVGMHEPKSLQEAREIAERYFNLREESSPNAYRPIRALSSSQSVS
VTEGRLADFERRVMSIDERLNTLSSLLKDQAERNSRDANTTGDGRQGRRGNDDRGRQPRGGRPMHNRCYECDREGHLARN
CPNPRYDNRRYQQQQPFVPQAWAPPQFVPPQPQPKTQQQMWVPQAPPPPQHQQHVQHPQPMHQRQANPLPSVNNVEAGN
>Gypsy-23_DY#LTR/Gypsy 1573-6171  [Drosophila yakuba]
MPLSEEEGSAGSSPKCILCEKSLASASIVKIKCGHKFHKNCFEVYSKTSNTCPICKEPQHHTRLQKRQNTPSRSAPANNE
DSGQAEIPQQLIGNMVAEQVKAMQNELLTQLSEKMSQLIQANIAVHFPQPPITTANIDTRRYSESVNFQVGGPTSMVHGS
GRATPRTEVTDLVQRPDKVGQILNSWKLRFSGSPEGLGVDNFIYRVEALTQQTLEGNFVALCSNSSLLFDGKARDFYWRF
HKSVREVRWDSLCYALRKQFRDTRTDVDIREAIRDRKQREKEDFDTFHDAIMQLMDSLETPMSERDVVDTLSRNLRPEIR
HELLNVNVGTVDRLREICRRRERFLDDVRRSHSYQKSIPFRKNVSELIEEIHLDDAVEFSDDGDEGEIGAMALICWNCRK
EGHRYQDCEGKRKIFCFGCGRPNTYKPSCVKCQKKLQDEHTASSAVVCSAPEIDEPRCEPVEXENLSPTINFPNLSDSIV
SPFTPWPQLIKSNQLSINPMSVSPKKRSRNANRMRAFWRAAKAVNAIRYKKADKRPYAEVRLLDKVVLGLLDTGAAMSVV
GGKLAEQIVVSKIPFKRAASVASTADGKKQEVIGRLRTPVQYKQVIKDLELHIIPSLSQDLYLGIDFWKEFDLLPVSMSV
DEISPESHQLSVSQQDILKSVVQRFPSFAVSGLGKTNKISHTIDIGDAKPVKQRHFPVSPAVERLLYQEVDRMLSLGVIE
ESDSPWSSPVVLVQKPGKIRLCLDSRKVNAVTKKDAYPLPQIDGILGRLPKAMFISSLDLKDAYWQIPLDPASRDKTAFT
IPGKPLYQYKVMPFGLTNASQTMTRLMDKVIPANLRNEVFVYLDDLLIVSDSFEAHMRVLGLVASYVKTAGLTLNVEKSK
FCMRTVKYLGHIVGEGVIRTDPDKISAMTNFPLPQSLKALRRFLGMVGWYRKFINNFASVSAPLTDLLKPRQKFVMTAEG
EKAFAKLKEMLCSAPVLHSPDFSRPFFIHCDASKSGVGGVLVQKSDEGDEYPLAFVSKKLNKAQKNYSVTEQECLAAIIC
IKRFRAYVEGHAFTVITDHASLKWLMTQTDLHSRLARWALKLQSFDFKIEHRSGRLNVVPDALSRVNEEELAAIDASHGL
LVELDLPEFKSDEYVELIEKVKANGEKLPDLKVVDNLVYRRTDHATGEALHDNFNWKLWIPTKLVPEVLKKAHDDPLASH
GGIHKTLERVRRYYFWPGLIKDVKDYIQACATCKMSKAPNRIQRPPMGTSPESHRFFQRLYVDFLGPYPRSRSGHIGIFI
VLDHYTKFVFLKAVKKLTADVVIQYLQQDLFHTFGVPETIVSDNGSQFKSDAFQKFLREYKVSHTLTAFYSPQANASERV
NRSVIAAIRAYIRTDQKDWDEQLSSICCALRSSVHSSIGTSPYYMVFGQHYVSSGSTFKLLRALRLLEDRSAVFTREDSL
DLIRSKAGEVMRKQNARNERQYNLRSREVSYAEGQEVWRRNFRQSNFVAGYNAKLAPAYVKARVKKKIGLANYDLEDLQG
KYIGRYHAKDMKQ
>Gypsy-23_BG#LTR/Gypsy 21-1235 [Blumeria graminis]
MSYRVPDSPDTLSHSTPSEVSFFSFTDYQPPTTMNNDMAGLQITSTPPTDQHHPRSNITLLPPHLWNLPYITHSPDILEV
ASQIDGERVSQLFASSVSSAPPTAPIPSVSPQPRLHLPIQPITPYDGTPENLRSFCSQLVIQIQTESFVAESEKVRFGYQ
CLGPAALVKMRPSFRCLEDPSIPPEITTLEGFLLALRQRCEDPSLQDQATTRVEKLYQNDSKFHDFITAFEDNMVDSIYS
TVDKASWKLMLERRLSVQLRSLILSSSDVPVEYHAFVAYLRRKDAGLQEILASSRARSSRPVSLNNHTPIPAPSIPRPQF
RPLHHEIPVSQGGSAMDLDLISRQKDASGRLTQKAKDARRTLGRCVWCNRIGHIARDCPLGTRSVATTSTEEIPQDMETL
KDQLQ
>SZ-26#LTR/Gypsy 210-4823 (1 stopcodon) [Oryza sativa]
MENEAKLDLILKKLTETDSKLVDLEKNSRADMLNLKTSVDSWKPQLEKKVTDLATTVGNLQLQFDQLQLLNKAEPKPDLT
AQLGARNAAEIRAEVLGSHPQSPPPANGTNSILFSTPAPYFHDPAMRTAFTGSAVGTSTGLPPMPCPQFDGDNPQMWREN
CEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQLIGVTWVELCEKVCAKFSRDRHQQLIRQYIHIRQTGSVTEYVD
KFDSLMHQLIAYDSELKPVYFVTKFVEGLKDAIHTVIMVQRPQDLDTACSLALLQEEAMLGTRRLEFSTPVKSNFRNTAQ
VSLTPLPVRPVVNEDKKTPEAAKITPRDDRLSSLKAYRKSKGLCFTCGERWGRDHKCASTVQLHVMEELLEALQEDDDPV
GDDIVAEAEGTLMAVSSQAIAGVESSKSIRVRGWVQGLELLMLVDSGSTHSFIDEQVARKLAGIQTLSHPVQIKIADGGT
MQCDRSIPNCNWWIQGCSFRTEFRVLQLGGYDAILGMDWLEQFSPMKVDWVQKWLEFPLARRLIRIEGIxPQTDHYPQIT
SLQIKGLMKTESVMHVLQIQKTDQTSDVVIPDSIKHVLDRFQEVFQEPTEMPPVRNCDHKIPLMEGASPVNLRPYRHTPA
LKDEIERQVTEMLQSGVIQNSNSAFSSPALLVKKKDGTWRLCIDYKHLNAITIKGKYPLPVIDELLDELSGAKYFSKLDL
RAGYHQIRLQPGEEHKTAFQTHSGHYEYRVMSFGLTGAPATFQKAMNDTLATVLRKFTLVFFDDILIYSPDLPSHIQHLE
QVLQLLQAQQWKVKLSKCSFAQQQLAYLGHIIGKDGVTTDPSKIADVLHWKIPQSVKQLRGFLGLAGYYRKFVRNFGTIN
KPLTQLLKKGVPFKWTAQMDEAFNALKQALVSAPVLALPDFSKTFTVETDACDMGIGAVLSQDRHPIAFVSKALGPKTRG
LSTYEKEYLAILLAVDQWRSYLQHDEFVILTDHHNLMHITDQRLHTPLQHKAFTKLMGLQYKVCYRRGTSNAAADALSRR
DEETNDQLWAVSECQPLWLTAVVKGYETDEQAQQLLTELALHPTAREHFHLVQGVLRYKGKIWIGHNLSLQQQLVTALHA
SPIGGHSGFPVTYQRVKALFAWPQMKKMIQQWVKNCTICQQAKPDLAKYPGLLQPLPIPEGAWQVVSLDFIEGLPKSERY
NCILVVVDKFSRYAHFVPLSHPFSALDVAVSYMKNIYKLHGMPKVLISDRDKIFTSKLWEFLFLKSGIALHLSSAYHPQS
DGQTKRVNQCLEMFLRCFTNAAPFKWVTWLHLAGYWYNTCFHSALNKTPFEVLYGHNPLQLGVTMETCAIPDLAVWLHER
KLMAELLQQHLHRVQQKMKFHADKNRSFREFAVGDWVFLKLQPYVQKSVASRACHKLAFKFYGPFQILARVGTVAYKLQL
PDDSTIHPVFHVSQLKVAHGFKHQVQSRLPKFLKSTVYPLQILDQRLIRKGNRTVSQVLVYWSDSVAEDATWEDREDLQQ
RFPMALAWGQATFQGEG
>SZ-7_pol#LTR/Gypsy 3120-6273 via tfasty with RIRE2_pol, 2 frameshifts and 2 stopcodons.  [Oryza sativa]
ELALITFLRDNACMFVWQPSDMPGVPREVIEHKLMVRPDAKSVKQRLRRFAPDRKQAIREELDKLLKAGFIREVLHPEWL
ANPVMVRKANGKWRMCVDFTDLNKACPKDHFPLPRIDQLVDSTAGCKLLSFLDAYFGYHQISMAIEDEEKTAFIMPFGVF
CYVKMPFGLITVGNTFQRTVQGALSNQLGNNVEAYVDNIVVKTKTSDSLIDDLREMFDNLRRYRLMLNPEKCTFGVPSGK
LLGFLVSGRGIEANPEKIKAIENMKSPTRLKEVQKLTGCMEALSRFVARMGERAQPFALLKKQDKFIWTQKAKEAFIALK
RYLSNPPVLVAPQPNEELFLYIAATPYSVSTVIVVEREKVQRPVYYISEALHDAKTRYPHIQKMLYAVIMTSRKLRHYFQ
AHRVTVVSSFPLGEVVRNKDVVGRIAKWVVELSQFDVHFLPRIAIKSQVLADFVADWTMPDNKSDNQGDNETWTMAFDGA
LNSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLARIRAAAALGAKRLIVKGDSELVANQVHKDYKCSNPELS
KYLVEVRKLEKRFDGIEVRHVYRKDNVEPDENHSNLGTFLDILTKPSVKEVSGEVSPNTPDISSEVTEAERAVADIETTD
DWRIPLIKFISSEELPEDDTEAEKITRKAKIYCMVGNDLYKKALNGVLLKCVSTDDDRHLLLDIHEGICGSHAAGRTLVG
KAFRQVFFWPTALKDAFDMVQRCEACQFHSKHTKLPAQALQTIPLTWPFSCWGLDILGPFPRGQGGYRFLFVAIDKFTKW
IEAVPTGEIKADNAIKFIRGIFCRYGLLHRIITDNGSQFISTDFQDYCIGLGVKICFASVSHPQSNExVERANDIVLQGM
KTRVYDRLMSQDKKWVEELPSVLWAVRTTPTTSNKETPFFLVYGSEAMLPGELRHQSTRVQKYSNENQEEQxDIDVNLLE
EHHERVAVRAASYQQSLRRYHEKRIRARILSIGDYVLRRVQTQAGQNKLSPKWEGPYTITQVLRPGAFKIADGDGRELAN
SWNIDQLRKFYV
>SZ-38#LTR/Gypsy 144-1877 via tfasty with Athila0_gagpol, 3 frameshifts and 4 stopcodons.  [Oryza sativa]
MIGFNLPKNFKENPEAFFQSVKSRVVAPQKTLPTQKPAIPVPRTFKTMADKTLCEFAAPSADNVATGSQINMADVNFDLK
SSLITMAQASPFCGKPKEDANTHLQQFLEICSMHTMKGVSPDTIRLRLFPFSLLGKAKQWFYANRATINTWDKCSMAFLS
KFFPIGKTNTLRGRISSFQQTRDESIPEAWERLQEYMAVCPHHGMDDxLILQNFYNGLTPTSRDHLNAAAGGAFFSKTVR
GGVDLIEKMVSNMGxSEExLQTCHRGMHTVKEPEMLAAKLDLLMKLLDDHEKRPKGTIKALDSHVTCGGLRQHGPPLGMT
AQKPMKKSTRDPPYPNPVETSSITQEAPSGSTTDEEVQPEKTVPQEYCDTRLLPFPQRSRKPAVDExFAHFLEVIQKIHI
NVPLLDAMQVPTYARYLKDILNNKRPLPTTEVVKLTEQCNNVILHKLPEKKKDPGCPTIICSIRTHKFDQVLYELGASVS
VMPKDVFDKLNFMVLAPTPMHLQLTDSSVRYLAGIAEDVPIKIRDFFIPVDFVVLDMDTKKETPLILGSPFLSTADANID
VGTGSIRFRINGKEEKFEF
>TCA3_gag#LTR/Gypsy 262-1794 [Candida albicans]
MSSPRPHSPRPSGSREQEDITLMIKAFRDSMEAKLELHSQKFTVLEANIPRTDERFDELSQRITVLENNQKAFLPKQEKD
IGNILHRQRKEEGDVKDIKTVVGEEKEELHQVEDFVLKDQEELRNVEKTVLKEEEDLQKVEQSMEKEKQELHQVEDFILQ
RDETVKKLEEEINNISRKLNAQRESNQSQREPYTMATSGSDPRYRSQQPNIGNTLAQDLALIPNLDPEICRLIKGYLPFI
ILHEINIIGGPIGKPPTFRPDLVIHNPKDPEKIQKLMRLQSYIQLSLVPYHLYPMILEPYLQGRYIGYMEDAKKSPANGR
EYSYVDVLIAFVKGSQLEVANANAQVELFKILPVPGQTVGDFIDAIQGKYRQLKQYNNVFVSVRAHVFSHLHKYFPEKIF
EADWLSKPESKFWTDLDLMVGLAVFQPPASLLNIDAINFVPPSYNNNQQSYERNNNQQSSYNRNLNYNPKTFYPRPFDKP
RFDKPPYGNGQIYYQNTSNSSIKYNPRGYF
>TABOR_pol#LTR/Gypsy 2281-5973 [Drosophila fruit fly genus]
CQTCTRHVGKPAGSLRASRTVKQKVHTINLNLNIFIKVKNEHTNKILTFLVDTGADISVIKENSDELLNLDHNNITQITG
IGKGSINSIGLTLLEMRTGNYIVPHNFHVVDDNFPIPGDGIVGIDFIKTFNCQLDFTTESDFFILRPNNIKQAIQIPIFH
NIDNTEITIPSRCEVIRQITVSSVDNQILIPNQEIEDGVFVGNSISDSKNTYIRILNTTNSNKILNVNKINFEPLTSYKI
ADLNDSIRAESILSRLKKNFPSAHKKMLTELCSQYTDIFGLETEPITTNKFYKQKIRLRDDEPSYIKNYRTPHSQQAEIS
RQVTKLIEDKIVEPAVSEYNSPLLLVPKKSLPDSKEKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDL
MSGFHQIELEEDSRNITSFSTSSGSYRFTRLPYGLKIAPNSFQRMMTMAFTGLEPSQAFLYMDDLIVIGCSEKHMTKNLT
NVFELCRKNNLKLHPDKCSFFMSEVTFLGHKCTDKGILPDDTKYDAIQRYPVPTDADSARRFVAFCNYYRRFIQNFADYS
RHITRLCKKNVKFEWTADCQHAFEHLKKQLMNPTLLKYPDFSKEFCIITDASKEACGAVLTQNYNGIHLPVAYASRSFTK
GESNKSTTEQELSAIHWAINHFKPYIYGRHFTVKTDHRPLTYLFSMVNPSSKLTRMRLDLEEYEFTVEYLKGKDNYVADA
LSRITIDQLKNISKQVLKVTTRNQSRQESCAGKGNKNDKVELPKQTTQEASKPKVYGVINNDEVRKVVTLHVNNMICFFK
HEKKITARYNVEDLYINGTLDLGQFFHRLEKQAGMHNINQLKMAPWENIFDNISIDTFKKMGNKTLKLLRVALLNPVTLV
NTKKEKEAILSTHHDDPTQGGHAGITKTLARIKRHYFWKGMTREITEYIRKCPKCQKAKIMKHTKTPLSITETPISAFDR
VIVDTIGPLPKSENGNEYAVTLICDLTKYLVTIPIANKSANTVAKAIFESFVLKFGPMKTFISDMGTEYRNSIIKDLCKY
LKVENITSSAHHHQTVGTVERSHRTFNEYIRSYISVDKTDWDVWIKYFEFCFNTTPSMAHNYCPYELIFGKTCNLPKHFN
STDRIEPIYNIEDYPKESKYRLEVAYNRARIMLEEQKKKNKELYDLKLNDISISIGDKVLLKNETGHKLDFKYTGPYTVV
KIEERDNIVISNDKKKPQTVHKDRLKLFSS
>SZ-7_gag#LTR/Gypsy 513-3116 via tfasty with RIRE2_gag, 4 frameshifts and 5 stopcodons.  [Oryza sativa]
QDKESQPLELQSLPRRLKAPSPESYVPVRDNGKEQGATPASDRFVEVIDIDPHEPPVLHLLEDYGSSTMSVPQEVLAIDD
VGTSTQANDRSGESIDYSSPTHQGRSSLTKGNSLRSRSExxPRALTERLRESVTNLSNAFEEVATAAHQDQPPTSDANGE
DPERRESPQRATPPPRGAGDLRDQINGRREARRTRDNVNRSRRHVSSRRHDNEIEETAQTRTGITTTTAIATIANARGPD
NTGHGRRRNDDNNGDRRRDNSERQRxDSRDPGRHTRNRTPEPSDPSSSSSSASSSSSDRHPRRTHDRxQPTAPNAGCRAF
GRSLRDVRWPERFRPGAIEKYDGSTNPEEFLQVYSTVLYAAGADDNALANYLSTALKGSARSWLMHLPPYSISSWADLWQ
QFVANFQGTYKRHAIEDNLHALTQNSGESLREYVRRFNECRNTIPEITDASVIRAFKSGVRDRYTTQELATRRITTTRRL
FEIVERCAHVDDALRRKNDKPKTGGEKKSATDASESSKKKNRKNGKRKAQAEVLAAEYANPPKRPDPQGSDTKKSWCPIH
KTDRHSLEDCLVFKKSLEKHMAFEKGKRVRIVEKNEETAPHESDYAYPDSDLHISHIFGGSTTYSSKxEYKKVEREVCST
WRGAAPKMKWSKQKIEFSKEDHPKTAVIPGRYPIVVEPIIRNIKVARVLIDGGSSINLLFASTLDAMGIPQSELTPTDQP
FHGITPQSSSRPFGKITLPVTFGQANNFRTEQITFDVVEFDTAYNAIIGRTALAKFMAISHYAYQVLKMPGPKGTITIQG
NTKLAVQCDKRSLDIVEQTPSPPATTEPPKKVSKTNKTPKPDGAIKIVPLSSANPDKTVKIGATLNEK
>RTIP1_pol#LTR/Gypsy 2588-5685 via tfasty with SZ-50_pol, 4 frameshifts and 4 stopcodons. Trimmed 12 AA to first M. [Ipomoea purpurea]
MPGVDRSIVSHRLAVDPEHRPVVQKKRYLANDRREFVKKEVSTLLTAGHVREVKYPEWLANVVLVPKPPTWRMCVDYTDL
NKACPKDPFPLPRIDQLVDETAGSALLSFMDAFRGYHQIFMHPADEEKTAFLTPDGVYCYRVMPFGLKNAGATYTRMVAR
VVHHLLGKSMAAYVDDMLVKSREEDKHAEDLADCFKVMIKYNLRLNPKKCAFAVQGGKFLGYMVTKRGIEPNTEKVQVIL
DMQPPTTIKDLQRLTGRLAALSRYLSKSADKTVPFFEAMKKKEGFSWTTECQQSFEELKQYLSTPPVLSTPQEGEPLLLY
LAASAKAVSSVLVxEEDRVQHPVYYVSRSLKAAETRYTVLEKIVYALVVTVRKLAPYFQAHTVRVxSDQPLGSVLRNPLS
SGRLVKWAVELTQYGIEYQPRPSIKGQALADFLVECTASEEEKEHASESNPGEWWEMHADGASSRQHCGGGVMLITPEGF
RLYYALRYLFSASNNEAEYEAVLNGLRLAKNLGVEWLRIKTDSRLVVGQISGTCEVRNARMALYKECATKMLKGFEAYEI
EYISRADNVEADILSKIALKGVPDHLIRICQKEELSWPSIEEAPLDVQQVNIGGWDREKNPEMFWIDDIxRFKETGELPT
DPAVAARVRRKAPSFRIVDGQLYKQSFGGPLLKCLLRPEAEKVMDEAHRGIFAAHQGAHTLARKLVVQGYYWPTMMRDCI
ERMSKCGVCQAFARKDTRPATFYTPVTTAIPFAKWGIDLLGPLPVAPGGLKFCVVAIDYFTKWVEAEPLATITEYQCRRF
LWKKVICRFGLPEHIVSDNGRQFDCQRFAEFCRRHGIKHTKVSVAYPQANGQVENVNRTLVDGIQKKLEDIRGNWADELD
RVLWAYRTTQRxATGESPFSLAYGFEAKVPVEVVEPTHRVRTYSDAANEENLQIEKKFLEERREVASPRMVEYQQAVKRY
RDRRTRPRTFQVGDLVLRDRQASQPTEGGKLAVKWEGPYRITAVVQAGTYKLEIMEGKLIDRIWNATHLKRFYQ
>Ronin3#LTR/Gypsy 17-4335 via tfasty with Ronin2, 6 frameshifts and 1 stopcodon. (merged gag and pol at ARPKDxARQRM) [Takifugu]
MDPADSDSVRKTLEAQGRLLGQHDKVLTDIWTSLQDLTTSVADLLTQGXPGQSPAPSTSAAPGVVTQLASIPSSAAAPRE
PHVPIPERYSGEAGRCSSFLLQCSLVFDLQPLTYPSXKSKIAFNLLSGRAAQWATAIIENQTPVSTHYPSFXTELRRVFD
HPVQNSEAASKXXSLHQGASAVADCSIHFRILAANSGWNDTALRGVYIQGLAEELKDELAAQEEMPDLEMLLDLXIQCMD
NRLRERGRERVRLRHXVSPMASGXLSGAAAEPPTRSHVPPPEVASSEPTQLGRTRLSHSERQRRITAKVCLYCGQPGHFI
AACPARPKDxARQRMRGVLASGASPCFSPARLMLPGTLLWSHDTISLSFLVDSGADDSFIDQDLVTQASIPTEVLSEPKT
ILGLNGEILAKITHRTAPLTLVVSGNHREQIQLFLIPASSSPGVLGAPWLARHNPQFDWSAGRLTSWSVSCHTNXLRSAL
SPSSVTPDPSPEVXDLSMVPAEYHDLGAVFSKQRALSLPPHRPYDCGIDLLPGASLPSSRLYNLSRPEQEXMERYIGESL
ATGLIRPSSFPVGAGFFFVQKKDGSLRPCIDYRALNDITSKNKYPLPLLDAAFGPLHKARIFSKXDLRNAYHLVRIRQGD
EWKTAFNTPLGHFEYLVMPFGLTNAPAVFQSLVNDVLRDMLNKFLFVYLDDILIFSETKEEHVQHVRLVLQRLLENKLFI
KAEKCDFHTTSIAFLGFIVGQGQLSPDPAKVSAVADWPTPASRKQLQRFLGFANFYRRFIRNYSKVVAPLTKLTSSLRVF
QWSHEAEAAFSHLKALFSSAPILSHPDPSRQFVVEVDASDIGVSAVLSQRDPADQKLHPCAFYSRRLTPAEVNYDVGNRE
LLAVVLALQEWRHWLEGSAQPFVVWTDHXNLLYLRNTKRLNSRQARWALFLGRFKFSLTYRPGSRNVKPDALSRQFSLDP
SSSEPGPILSPSCIVGAASWQVEERVLEAQQSTPDPGGGPPNRLFVPSSARSDVLQWGHSSRLTCHPXLSRTLHFLRQRF
WWPSMARDAKAFIAACPVCARGKSSHQPPAGLLNPLDTPRRPWSHIAVDFVTGLPPSDGNNAILTVVDRFSKAAHFIPLT
KLPSAAETGDLLVRHVFRLHGFPKDIVSDRGPQFXSQVWRAFCAALGASVSLSSGYHPQSNGQAERTNQSLESALRCVVA
RNPASWSSFLPWVEYAHNSLVSAATGLSPFMASLGYQPPLFEFQEDEVAVPSVRANLCRCRSVWRQVRSALLRSSQQXQR
QANRHRVPAPAYQPGQRVWLSTRDLPLQVDSQKLAPRFIGPFEIDHIVNPSAVHLKLPPSIRVHPTFHVSRVKPVSEXDL
VPLSEPPPPPRVIDGGPGYTVQRILDVRRRGRGLQFLVDWEGYGPEERTWIPRRNILDDSLLRDFYRDHPDKPGRVPGGA
H
>SACI-7_pol#LTR/Gypsy 655-3792  [Schistosoma mansoni]
DKQPNLSGKRSGQTVTAAAATGQHVSRLFHFRDRISGSDFLFDTGAEISIIPLHLSRRQQTTSTKLSLIAANESVIKTYG
EQSLILDLGLRRRFTWVFIVAQVKRPILGADFLSAYNLLVDMTNKRLIDVNTRLQVNVALSNDNEIQGVRIMKPVNNIFN
DILTEYQCITKSDYQKESNPQLVQHHITTTGPPTRARARRLPPNKLQFAKREFEHMMQLGIIRQSNSPWASPLHMVPKKD
QDWRPCGRYRRLNNQTIPDRYPIPHLHDFSLNLHGKQIFSKLDLVRAYHQIPMAPEDIEKTAVITPFGLFEFLRMPFGLK
NAAQTFQRFMDEVTRGLDFVFVYIDDVLIASSSTEEHIQHLHTLFERFKSYGVVINPSKCIFDASSLEFLGHHIDSQGIK
PLEDKVKAITSYPEPTSVKSLRRFLGTCNFYRRFLPNCADVLQPLTDLLKNDKSGTKKEKNQIFKLPTDAKVAFEKAKSM
IANATMLQHLNTDPTTLLIQCTDASQKAVGAVLQQRVNNTITPIAFFSKRLSPAQERYSTFGRELLAMYLAVKHFNFLLQ
GCDFIIMTDHKPLCHSFSTSYDKNSPREARQLDYISQFTTDIRFIKGHTNIVADALSRRDINTMVLNHDISLETLAKLQA
DDAELKACKEKSSLDLKPVPIPLSDAFIMCDTSTNNNRPFVPHACRRKIFQHLHGLSHPGIRATTKLITERFVWPKINSD
VKRWTRNCLQCQRSKTQKHTYSPIGKFPIPDKRFQHVHLDLVGPLPPSNSFTHILTAIDRFTRWAIACPIRDTSAETVAS
VFLDRWITNYGVPSIITTDRGPQFQSVLFQEFTKLLGVNHIKTTAYHPAANGMVERFHRQLKSSLMAQADSSKWSDALPL
VLLGIRSTIKEDIGCTAAELVYGTTLTLPGQLVNYEPTTHGDSTHFASRLLQMMQNIRAIPPREYNNPVHLDKHLETCKF
VFVRVDAVKKPLTPPYEGPYKVIERTCKYFIINKNGNNETISIDRINQLSTNPLKPLMTIRRTNNHSHQLLRNKRKRKNS
ALHPLV
>SUKKULA4_HV_gagpol#LTR/Gypsy 851-5311 pol-part very similar to Erika1_TM_pol [Hordeum vulgare]
MLSVFRMAPPTRQTPAREDMPPPPPPPPPPPPPPAEAWQAMMAATNANTQMLLQLIQERANHQQGNFQQGGNHFASLSQF
LSNQPRTFTSCDQPFDAEDWIRDMNKHSECSNVRPEDYVKFATFQLKGQASIWWQHLKDSRGGRVMSWDEFCRDFRSHYI
PSSFVEEMREKFRRLKQGNNSVYKYNVEFHELARYALQDVPDQKSKIYQFRGGLKEDLQLALALHDPEEFDKFYNLALRA
EAALLRVENSKKRFRDSSSSSTQVVQKQQRFWVSSPPPPRHSQQPKHSGGRGSSRPPNPGFQQRYQQQKQGPPQIQFRQP
ADVTCHKCGQKGHYANKCTSQLRLPPPPPGKPPSNALVKFNPRLARVNMVNAAEAENSSDVIMGNLLVNDFPAKVLFDSG
ASHSFLSYPFAAKNDIHLQELARSFDIVSPGMLMSSRWFAPDVSIKMDNYAFLASPYVLGKSDIDLILGMDWLAMNKASI
DCEAKEVKMTHSSEDVIIFAARDDTVRLFSLNEKGEINPIEQVPVVCEYQDVFPEELPGMPPHREVEFVIELEPGTEPVC
KRPYKLGPEELKELKRQLDEQERLGLIRPSSSPWGCGVLFVKKKDGTERLCVDYRPLNKKTIKNKYPLPNINELFEQLKG
AKVFSKLDLRMGYHQIRIREEDIPKTAFRTSFGSYEYTVMSFGLPNAPPTFCRLMNYIFSPFKNEFVFLYLDDILVFSED
EEEHEKHLRLVLDKLREYKLYAKFSKCEFWLKEVVYLGHIISAEGIKVDPSKVQAIVEWEPPQNVKQLRSFLGLAGYCRR
FVENFSKIAKPLSSLLQKGVKYVWSPECQLAFDTLKEKLTSTPVLAPPDDSKPYQVFCDASLQGFGAVLMQDRKVVAYTS
RQLKPAEKNYPVHDLELAAVVHALMTWRHLLLDRKVEVFTDHKSLKYIFTQPNLNLRQTRWVEMLQDFNPSVEYTPGKAN
VVADALSRKAYCNSLILQPLQPGLSESFRKLNLQLVPQGFLANLQISPTLEDQVRAAQLLDAMVKKVKIGVGKSLPKYKC
FTMDARDTLFFEDRLVVPKGDLRKVIMEEAHNSLLSIHPGSSKMYHDLKQSFWWTRMKREIAQFVNECDVCRRVKAEHQR
PAGLLQPLPIPEWKFDHIEMDFVTGFPKSKKGNDAIFVVIDKLSKVAHFLPVKESISAAQLAELYTSRIVSLHGVPMMIS
SDRGSIFTSKFWDSFQSAMGTKIRFSTAFHPQTSGQVERVNQVLEDMLRACVISFGMKWEDCLPFAEFSYNNSYQASSGK
APFEILYGRKCRTPLNWSQTGERQILGNDMIEEAEKMCRIIRDNLRAAQSRQKSYYDGKHRDMSYELDDFVYLKVSPMKG
MQRFGIKGKLAPRFVGPFRVVGKRGDLAYQLELPATFANVHDVFHVSQLRRCFKNPERTVHLQDIDLQPDLSYREHPVAV
LEATERKTRNKSVKFLKVQWSHHSDKEATWEREDHLRSEFPDFVQS
>Samurai#LTR/Gypsy 17-4116 via tfasty with Ronin3, 7 frameshifts. (merged gag and pol at SSSLLxTVLVD) [Takifugu]
MDPAKSDLLKQTLSVQAERVHQVESALRQMSEHMQRITAGVSQLSGQLVALDERLPRVQDIAASVPVDSPPTNPATQPRE
PYIPIPGRYSGDLGTCSQFLHQCQLVFTQQPLTYSTPQAKTAFVMSLLTGQAAAWSVAVAPQRQELMGDYTGFVGEMKQL
LDLRQGSSSASDYAVNFRILAAESGWGDSALQAIFLKGLAGELKDELAVRDECHPRRGDSSTPAPSFTHLTPSRDLLPPP
TTSQEQPPQPAEEPMQLGRTRLMAAERQRHMQHQLCLYCAQQGHYISRCPEVPRGRGSPISRGTELSCISSSSLLxTVLV
DSGADESFIDSDFVNTHGIPTYDLSVPKEVHSVDGKLLTLVTRKTQPLKLNLSSNHHEFIEMFVICTPLNSIILGIPWLK
LHNPHIDWSTATIRNWSNHCHAHCLKSALPTRPTNPSPAPEEINLTNVPSDYHDLQQVFSKASASSLPPHRPYDCAIDLL
PGATLPTKRLFHLAKPEREAMEKYITESVAAGLIRPSSSPVGAGFFFVEKKDKSLRPCIDYTGLNDITVKNKYPLPLIDS
AFSPLHTATVFTKLDLRNAYHLIRIREGDKWKTAFNTPLGHFEYLVMPFGLTNAPAVFQCLVNDMLRDLLNKSVFVYLDD
ILIFSRSLEEHVGHVREVLKRLLENKLYAKAEKCEFHVSSVSFLGFVIEKGQLRADPSKVAAVKDWPMPTTREQLQRFLA
FANFYRRFIRNYSRLAAPLTRLTSPKLTFVWSPDEQQAFEKLKNMFINTPVLTHPDPERQFVVEVDASDSGVGAILSQRH
ATDNKLHPCAFFSRRLSPAEANYDVGNRELLLVVLALQEWRHWLEGGTQPFTFHLRTARRLNSRQARGALFLSRFSFTIT
YRPGSRNTKPDALSPQFSSEEREPSRETVLDPECVLGEVHWPVEAEVREALQGQLVPTDARSSVLSWGHTSRIACHPGVH
RTLALIRQRFWWPSMAADVRTFVAACTVCIHSKSSHRAPAGLLQPLPIPPRPWSHIAVDFVTGLPPSEGNTTILTVVDCF
SKAVHFVPLPKLPTALETANLLIQHVFRLHGIPQDIVSDRGPQFTSQVWKAFCWALGTTSSLTLGYHPQSNGQTERANQS
LEASLSCVVSRLPSSWASHLPWVEYAHNSLVSAATGLSPFMVNHGYQPPLFPSQESDVAVPLVRAQFRRIRRVWWETRAA
LDRTAEHNRRLADRHRAPAPNYQVGQQVWLSSRDLPLQTDSRKLAPRYIGPYPVDKIINPCAVRLRLPASLNIHPVFHVS
LLKPPQPPAPPPPPPHLVEGHPAYTVNKILDVRRRGRGFQYLVDWEGYGPEERSWIGRALILDPQLLRDFYLRFPDKPGR
RPLGGGGY
>TCA3_pol#LTR/Gypsy 1658-5479 [Candida albicans]
ITTRKHSIQGLSINQDLINLHTEMVRSIIKILQTPLSNTTLGDTFNNNQQKGKPPYRPFRRRGYIWNKGKRSQKIYELSV
DPETQLGQIVNDDDTIESQLYQVDLIEEDENDNQFEQPVHEESLDEQEDDEFDFQINDLQLYEVNVTDVASTGKNKAPRI
LLDSGAEANFVGKEILPWLEEHGLLFSVTKLRKFATARTASNLSHTIEFVAIVKIFGVFLEFYIMDELNKIIIGRPTLQN
WNYHLNNEGEFILINNQRYHIHSLELKSEKSLEQIREKLKKEFAVKYPKLFETKLRPPPPRDFQYKIQLTDHTQIYSKPY
KCNQEEQALIKDFINEKLEAGVLVPAPIDAWLHPIFPIRKTNANQSSTKIAVDLRRLNKVTVRMYTYPTDTKDLLSSLTD
SHYFSALDLKNAFYQVSIHKDSIKYFGISTSEGNYCFTTLPFGAINSPTIFTNFVRQILEGIPCIFIYMDDILIHTKTLH
DHMSLLRRIMEKLNEHQLQMNYNKMQLLTTKINFLGYSIQANKISPDISKIQAIQNWELPTTTTQIRAFVNFSNHFRIFI
PEIAKFTNPLNELLKNNNGKNIKIEHTQASIDGYKALKAAIIGLPTLQLYNPKLPTIIFTDASHMVVGGYLCQPTFRNDK
EVLVPIAFSSHKLTETQSRYAAMEKELLAIIVILEKFRYHCSNTVEIYTDHQSLASFLDKKTTPPPRIARFLDLIGSFSP
KVYYLSGKKNFVADIITRYQTQNIKELVDEDKILGQTFTVKRNWKQQLLPRLEAIELENLNESQVHKIQTSLEQQQQHDL
EDNDEELSLQLFKLMNDELFVIINNQLLKYLPRLEYNDICQTIHDKHHPSTRVTDYLCTLAYWHPDHLLIATNITRKCHY
CQLNTSIREAIRPYRPLEPLKAFSRWGMDYSGPYFNTVQHRYILVAVEYVTGLTIAVPTLHKDADNAISLLQSIILIMSA
PTELVTDQGKEFSSQALATLCDRNNIQHHITSAHHPRGNGRVEKVNHLLKKILKALTNDTMQDWDLKLYDALRIYNATPT
IFNYTPLYLALGIEPHHNLNQLQKDLIENLQKELPPEVQSTEEHEENPNDEQQEEGREQQISREEQQDGRDLVHLRIYEL
EAIKKARKLHTNLKTRRNAVQNMLKEPYGIPAPFTKGQWVYRIRAKARKYESNFDGPYQVQEVLGKGAYKLRDITGREKG
IYNQDQLKLAYSADNDPIQVFSSFNKEYDRVQQKLLDKIQSERDHQLNCLSVQHLHRQRRLLDISSCLEQILQ
>XP_003329385_pol#LTR/Gypsy (fragment)  gi|331233448|ref|XP_003329385.1| polyprotein [Puccinia graminis]
MTRWVAFIQLFSFDIVHKPGKTFTLPDGLSRRPISSDDEEFYQDQEDFDEEEPVVKPCYNFQICSHAEMLELNEWESPGY
WRDVRHYLETLEQPAHMDRLEFARLRRNSARFFSSDGRLMRKHSPAPQIVVTRDVYQERLLRKVHEELGHRGIEETYQRL
VTRFWWPSLKKKVKKWIQSCEECQKRDPLVPREIRNATGDSYLFGQVALDACHIKAGQYKYLIVARDDLSGWVEAAPLVK
LTASNVAKFLLESWVYRYGAIKTVTVDNGAEFKEDFIEAVEKTGAKLKFTTPYYPEANGMIERGHRPLKDTLVKMCGESG
GKWREYLPLVLFSNRISTKRTTGFTPYELVFGHLPVLPVDLEMDTYLGIDWSEIKTTAELLEARTMQLERREEILEEAHD
KMIKAREASVRYWDRKMAARLRRPLTPGDLVLIYNKSLEDQWGKLFSNKWNGPFKVKEQLPKGSYLLEELDGTELHRTYA
ASHVKRFYPWGRRLDEIKDNEEDPEIGSNDDESQNSSDHEEDSNGSDGNSSN
>XP_002739485#LTR/Gypsy gi|291239145|ref|XP_002739485.1| PREDICTED: LReO_3-like [Saccoglossus kowalevskii]
MNDTGDAADPSGGPPLLTPMHSHLEGNLNKGLQDWDPKHQDTVRLRREEREYELQMVMLKQKLEMEKLEAVRIAEEQKRR
HEVEMKLRDLELEKLRMQGREHSTDNSTVIVDKGPNISHFKEGDDINVYLRTFEKIAIAHHWPRDMWALKLIVNLSDKAQ
VAFSSMSDKDSNDYDLVKAAILQKYELTAEKYRSSFRSVKWDVRCESFTEWDARMENLLEHWLEAAEVDSMETMIDLLLR
EQIKENSPYELKIWIREREPKSKGEIIKLAEQYIAAHGKPKTNKSMASNGKFRKWQSNSVQQSNKNSQANTCFKCGKPGH
ITTTCPMNLKPSSNSGSGKGSKVFYCAGESKQNVQGLLNGQEVVVLQDTGCTQTLIKSKFVSKRAYLLGQYVCVRLADSS
TRQVPMARVHLNCKFYRGKLDVGVLDTLAEDVILGNEVYVSMTKDSQKSTAYVVTRGKSKALKEKNAKVRCNEQLTDVHA
RPVEQLPESVVDVGDTNDSIDDQGELDKVEDHNDEIQLPVSDNEVFDVFKLRRAELIKLQQSDVTLTKVREVVVPENMIA
NKVCFFWKDGLLFRQWRPMNSAEAAEVTQLVVPLKCRGELLRIAHDIPLAGHLGIEKTKQRLLQHFYWPGIFSDVAHYCR
TCAECQKSAKRYAHEKVPMISMPIVDVPFRKVAIDLVGPLPRSKKGNKYILVLCDYATRYPEALPIPNMEAETVADCLIE
IFSRVGIPNELLSDQGTNFMSKLISDMCVKLHINKLKTSIYHPQCNGLVERFNGTLKCMLRRYTAEHPKVWDTYLPYLLF
AYREVPQASTGFAPFELLYGRHVRGPLAVLKEGWTGDIPEEENLAEYVINMRDKIGEMMEVVKQNMVVAQAKQKRWYDVK
ARDRSFDIGEKVLVLLPSRSQKLQAEWQGPFQVTRKMTAVDYEVNVGSRRKTCRVYHINMLRPWKEREEIACFVDIVEVV
KEENDVLDACFVDIVDVVKEENGVLDTVAEKKGKENWKDVKIYENLTEEQRAEVLQLLERYGDVFTDAPGLTGLVEHEVV
TCEDFPLRQKPYRLPQAVQSTVREELDKMLKSGIIRPSKSPWASPIVLVGKKDGTVRFCVDYRSLNSVTKFDAYPMARVE
DLIEKFGDACYISTFDLSKGYWQIPLSKSSCEKSAFITQFGLFEFTVMPFGMKNGPATLQRLINQILQGTNEYAGAYMDD
IEVHDVSWKEHLLHLQAVLERLRNAKLTVKPSKCYIGGPQVSFVGYMAGSGVIRAMLDKVQAVNNFPRPKTKQNVRAFLG
LVGYYRKFIPNFSEIAFYLTELIKKKCSNQVIWTEDCETSFCKLKQALTSEPVLHNPDYTKPFVLQVDACDHGIGGVLSQ
NNDKGEEHPIVYISRKLLPREMNYATIEKECLAIVWAVEALYPYLYGRAFTVQSDHHPLKWLNQLRERNRRLMRWSLTLQ
GYQINFQHKKGVENGNADGLSRAWQSDVG
>ZEON1_ZM_gag#LTR/Gypsy 137-1399 [Zea mays]
DVLSLRETRSQKRKAASPTPPEDDLDQEIQNLEILQQQVQRKKEKMARLADLQRQIDEASEEVRHLVQDDQNRRPPRREL
HQEGFYNEDDWYEDFHHGNFAFDDASPLSTELQATPWPQSYKPPQLPMYDGHTDPKQFLMSYEATISSYGGNTAVMAKSF
VMAVKSVAQTWYSSLRPGTITSWQKLKDMLITSFQGFQTKPVTAQALFQCTQDHEEYLQAYVRRFLRLRAQAPTVPNEIV
IEAMIKGLRSGHSAQYFARKPPQTLEKLLQKMDEYIRADNDFRQRREEAFRFSEMTRGFGGRFHTRHVRSIHNSTQSDDR
GSQQQRPQYSLQASGQQQSPVRPPAPRGRGARGFGGRFGDQPRRIYCIFCGEDKGHTTRMCHVTIQKQKEIAEAAASVAS
ASQPQASWQQPPPPPPTQRG
>Tngr2_pol#LTR/Gypsy-Cigr   from_retrobase [Tetraodon nigroviridis]
ERACPCTSFLFCRCLPGSSIHQRPAVGKLAPPNVQSRTLGGEVQGSESGVSDAVRERLIASSPLVVIKLAGVDVRCILDT
GSMVSTISESFFQQNFQGNLKSCHWLELRAANGLEIPYLGYLEPDVELFGCVIPRRGVLVVKDPPGRVAPSDVPGILGMN
IIKACYQELVRQCGSGLCALSEVVGPARPWLSAFQLCQQAEVQSSPACVGLARLRGREPVQIPAGSTKIVAATCSAGFGA
LRSILVEPLGPEYCLPAGLLVSSALVCVVRGTAYIPVVNVGVSAVSLKRRCPLALLSSAEVVSIPPGLSENQGEVEPVTA
TVLAQTAEMGSVQSQIRDLDLSVLPEVEQGKVRELLMKHRHVFSAFEGDLGCTSLITHDIPLVDDTPVRQRYRRIPPSEY
EAVKAHIHQLLETQVIRESSSPYASPIVLVKKRDGSLRLCVDYRQLNKKTRKDAFPLPRIEESLDALSGAKWFSTMDLAS
GYNQVPVTEKDKQKTAFCTPFGLFEFNRMPFGLCNAPGTFQRLMERMFGAQHCQTLLLYLDDIIVFSSSTEEHLKRMDVV
MGRLGQEGLKVKLEKCRFFQKEVQYLGHLISEEGVSTDPSKVSAVADWPRPTTVSELRSFIGFASYYRRFVQGFAKLAAP
LHRLIAELNGGKRQKGWSLQFGEAWSAECERSFNDLKACLVTAPVLAFANFSLPFILEVDASHSGLGAVLSQEQGGKIRP
IAYASRSLHPAEKNYSSMKLEFLAMKWAMVEKFREYLWGHQCVVWTDNNPLSHLASAKLGATEQRWVAELSAFDYTVRYR
PGRCNRNADALSRPSAAGAHVLRQMLPGTAVPSAVQEAADEPWMTGVQAAVFAFPSRSQADLRVLQEGDAAIGVFLRFWQ
EKRLPSRAEKEQLGQQVRGLLSQWDRIVQRDGLLFRRYLRSDGGEEVLQLLLPECLKEEVLCQLHQNHGHQGMERTWELV
RQRCYWPRMDRDIRDWCQRCERCVLAKGTQPQLRAPMGHLLAAEPNQILAVDFTVLERAQGGQELVMIMTDMFSKFTQAV
PTRDQKAVTVAEVLVKEWFYHYGVPARLHSDQGRSFESALVQQLCGLYGVQKTRTTPYHPQGNGQCERFNRTLHNLLRTL
PLEQKHRWPDHLPQLLFNYNTTPHQSTGESPHFLMFGQVPHLPVDFLLGRFPERTEGEVCDWVVEHQRRLRLAFECAKGR
MEAAARRRKERYDQGALGEPLKIGQRVYLQDHGVRGRNKIQDVWSGTAYQVVKVPGPGGVVYSIAPVHDLTRVRRVHRTM
LKPALPLPLNRLEEEPQDLAESVSEASEDEGLWLVLGEPSQNLPVPAQPRVLAGGSPVSPPEEMIPFAALEEASGSGAAA
LRRSSRTTAGQHSNPHHLPRSVGVEASGATASPVLSASGVAAAIFRPWS
>Cigr3_gagpol#LTR/Gypsy-Cigr CionaInt  from_retrobase [Ciona intestinalis]
MAFNVFISPPTFSPDCDLGNFIKLFDSYCESVKASDDVKRHMFITAISQDLRWQLQGKDPCIFNLSYKTLTERALGLNNN
KVHREQLREELLKRRQLPRETTREFAFAVKSLGDRAYPDVDNEAAIRNEVTYLVFTCGLVDRDFAKTIPSKLDYSRDFWA
AVQLAINTNTTGSLEVAPVDSLRARGSDVVNVGSTNQITESLKAVQQSIEGLQRMMSHKPEIQQRQWPDTQTREPYRTPN
AANLVHRNRECYGCGKLGHIRRFCNNVRQVSRPDIKINDAYIKNTNVQSKNAFFRKEIHSRPPYIPRSNTETVSNERIEK
VGCLKAAKLHRFANVVVNGTVVSALVDSGSTITLLRADVLHTLFVNKKLDAVPRHMRFVGPSDESVTMLGVTRIPLSVGG
LKTNIEVFVSPEIAHKMILGLDFLENNHCKLCYSSNLMSVGESTVPLLSKPFIPERQEVYVTESIDLPSMTEIIINGTLE
HHHNNDGWPDFPVLVERNEDFGTRYSLLTANCIVTAKSGIVPVRIANFTDDHINIPSGVRIAAALPLSAFGKSDCYLPET
CVALNVPGPASNSTRKLKHSICTLSKSSGGNAKFEAIRDGVKLGDKLKQHQKDQVWNLLRSHERAFSTSSNDLGQTSLMK
HDIDTGDANPIRLPPRRTSYHARQQIENIITEMKEQNLIRHSTSPWSSPIVLVKKKSGEMRFCVDYRRLNDVSKKNSYPI
PRVDDSLDEMSGSVYFSTLDLKSGYWQIPMDHESREKTAFSSHVGLYEFNVMPMGLSNSAATFQNLMRIVLNGIEWNGAL
AYLDDIIVYGRTFDEHIQRLDEVLGRIEKAGLTLKPTKCDLFGESVGFLGHIVSKDGICCDPAKVAAVKAWPVPRNTKQV
RQFVGLTSYYRKFVKDYAAKASPLHKLTEKGCRFQWSDDCQKAFASLKDALTCAPVLQYPDFTKHFFLDTDASDTAIGCV
LGQVVDGKEHVVAYGSRTMTKAEKHYSTTRKELLAVIFSTKLFKCYPAGAHFTLRTDHASLRWLWQSRDLYGQCARWVEH
LAQFNFDLIHRPESKHNNADALSRLEVGEDFPYPLKNDSGNNDNDGVQMEQVCQLHLTSALGKTTTEIENAQRLDDQLTH
VLPWLDRGVRPTYRKVKKLGKEALHYWAIFSKLTSENGLLYVKADNNSIPGALTYKLAVPQNLRHEIIESLHDPAHGGGH
LGVTKTLGKVVERFYWPRQKEDVEKYCRQCQLCVLNKKPNKTIQAPLVPSTELKAMQRIEIDVLGPLPVTRAGYQFILVA
CDVFTKYVRAWPMRQQTAKETASLLYHRWFTVHGVPEIVHSDRGTNFESKLFHELIELMGSKKTRSTAYHPATNGGVERN
NQTIIKMLRNYIQKDERHWDEALSAVVASYNGSKHESTGFTPHFLLTGRTLRLPTDLICPELIKSNVPNQLNDLSGLQDQ
LLLAQEIAQDRLKVQRTRMEQQYNKKTHGKCIENGDIVLLTNPAIPTGKCKKLQFPYKGPYRVLEKKGPVNYIIQDKAGN
KQTVHYNRLKPAAEGSTWPEDTIEALNNPNEQQVSQQPVCGFVYTPDLTATPRRDNDNTTNNENAECSPTSKEADESTNT
EDEASGESTRKEPEETTHTRNDVSQNDLTLHELQRERPKRNRRRPQYYVEICVLQEKDECSKGGVTLWV
>XP_002731721#LTR/Gypsy gi|291223447|ref|XP_002731721.1| PREDICTED: zinc finger protein-like [Saccoglossus kowalevskii]
MATNVITTPTGRGRILSPSFRDIAPSTVGEIRQQGEELGYQGADLDKYVRSTFKQMQDQERTERLAQRERDHKERLAERE
SQARLVEKELELTRLKMEMFKTGQSTSESKTSPFSIKIKAPPDFVQGDDMDVYIRRFEIFANNCQWSQDVWGVAFSGQLS
GKALAIYNALDVEQTKDWASVKCAMLKAYNLTEEGYREKFRQSRPAKFETATQFVVRLKHYLARWVELSGIENTAEALID
LIAQEQYLSTCSYEVVMHVREHACNTVGEMATCVDRRDESRHYTGMNHKTPRVEKTSKNTSQLPSRAQGLEATGGQQSKC
KPVCHRCGKLGHMKTKCWSTRDAKGNILTVGACMNTRSVLNASSDKSTVANRASTSVLITEGKQMQMTKIGDKVLPVPAM
MGIGISEVAETISMPIAVGTVNGHKVSVLRDTGCSGVTVRTSLVHPSQMSDEEGTCILIDGSRIRTGIAELEVQTPYYTG
PVRALCFKSPIWDLVIGNIEGAREPFNPDLGQDGGRSNMVNNRYLYRGTPCNETVSELQRHNKAGRQFHAPIRPGVQEKS
NSIDAVQGVVTRSQFWGGDKLKAPLKVLTRPNNTLVTTEELKAAQKRDPTLKRARELATKGVEINTGTSNICRFLFKKGL
LYRHFHSPSLEFGRTFKQLVVPSAFRLEVMKLGHDSILAGHLGTQKTINKIFTQFYWPAMHEQIKRYCRSCDICQRTIPK
GKIGKVPLGTMPLIDVPFKRVAMDLVGPIKPATTKGHQYILTVVDYATRYPEATPLKRISTEVVAEALFTIYCRVGFPEQ
VLTDQGTQFVSDVMREVSRLLSIKQLTTTPYHPQCNGLVERFNATLKGMLKRMCSERPKDWDRYIAPLLFAYREAPQASL
GFSPFELLYGRTVRGPMTILRELWTGEATSPEVLNTYEYVLNLRNRLETTCQIAQQELTKSSERYRSHFDKKTKPRKFEV
GDQVLLLLPTSADKLRMQWQGPYKIKERVGQVDYRIDKNGKLKLYHINMLKKYEERSFDNCEKDSITRSEVGTAGLLTCD
GPECRSPDIIEFVPLLGEETIEDVHLGPDLLESQVMEIKLILRKFTKTLTDLPGQSKVGCHDIKLTTDQPIKCKAYANPF
ATQKLVIKEVEDMLKMGIIERSDSPYAAPIVLIKKKDGKIRFCTDFRRLNQITVFDAEPMPNPEELFSNLAEGRYLTKLD
LTKGFWQIPLTPGSKPKTAFLTPLGLFQYRVMPFGLVNSPSTFSRMMRVILGGMHGKVVNLVDDILIYNKLWEDHVCTLV
EVLQRLQEAGLTVKPSKCYIGFSQLEFVGHVVGHGELRTMPSKINAMQNARRPETVTQVRALLAYAGYYRKFVPNFTAIA
APLYDLTRKGLPKKVIWEMVHQLAFEQLKHALSNPPILKLPDFNRTFVLRTDAAEVGLGAVLLQYYDEVAFPVAFASRKL
TKAEVNYAVIEKECLALIWGLRKFQQYLHTASFWIETDHKPLIYMKSAKFTNSRIMRWALYMQSFSYRIIAIKGSHNIGA
DYLSRSSDKGMLG
>Tor1_pol#LTR/Gypsy gi|49035813|gb|AAT48677.1| pol protein [Oikopleura dioica]
MKISRAPPAMPTGKECRKRTTAPNVGSATGRTDRGEPGQLAPSAVGTAIRGEGTAPPIVMINDRTATSSASPITAAILSV
ITATTGAICGANVQRHSRNASSVSKRQSRIEKRQPGRKKPHPGRVLKTKNTINKIAQASTNELERFQTLLVNTDITNNGK
IHKNCLTLLDTGASITVASLAFSQNLEREGFKLNKQTPARRNPVAAKGTEMPISFDIIMTVILRGNPDIKFVKTRISIIK
GLQAELILGVDSLQGRTLQMRRRAVYVDGQLFPLALPKRTVVLRVLEAGESDGLNFLRVKISPRKVERASKRLLLTLDPT
LSPGVPEVNIIMASSELEAQTIITLPGPPVLVPRIFLARIDEVPNESESQPKGGLTTEDITKMTSNTKLGESGIRRLKDI
LKTHASAFSKEKTEVGLYKGPKVNLQLLDPRLPGAWVRPRRIPISQLEWLRGELQKMEDAGIIEKASGSSFNAPLQLVRK
SSGGYRICVDMRSLNNRLAESKWPLPSLAETLESLAGTAFFSCVDIRQAFFHMALTDESKHLTAFSALNCQYQFRRLPMG
LKISPSVYQMAMKETLGNDLGNKAVVYLDDVLVTGRTEDEHLEALDVVLDRLRKAGFLLNPDKCILGVKKTTFLGHEVTT
EGYYPKTDNLAAIREFPKPTNKKALRRFIGMTAFYSTLVPKLQYKLAPLHAISGSKADFDWTDEQEKAFDEVKTALLAKT
GLAFPSRLPTAKLIVTTDASDTGYGGMLSQKIGDDPEQPLGFTSGFFRGPSTRWAINEKELFAFIKTLEVFHHHTYGRAF
TWRTDSRCLAFICAETNGKQTKRPSAKKLRWLEKLGEYDFSISHVSGTSPEMAVPDGLSRIDPPMETVMNIDSAIENRFK
VLNRAIPTWMKLRGLTQSELRESQDNDADLLKLQNDWKPFRSKFKVKLEKHGAYILDGKVPRIPIPTELQDRIILNFHLP
GHARTTNMLGSMRDTGVIFPKMAKKIKQKIMTCPTCLATGSTERPRFTPITPPKESHPYMTVTVDLLGPLPSTPTRKKYI
LAAIDNLTRWIELRCIPDKTAAHVAKALMDIFFLRGPPRAVSCDNGREFSNTLLRELLASFGTCINYGTPYRPQGQGLIE
RANREIVKHLKGLNIEEHKWDTFIPSIQLSMNLTYHSALGSSPFQAMHGWTLAEPLFSKKVDGSEIQSDVRLWVQESGAR
MCAALALLTAKQAVPLTPIPVESDDNALEPGTHVLLKTMTPPGVSAKLYSPWKGGYVVRKRCDHFTYLITPLEAPRRRFL
VHRQRIRTVHKDLEKSRDKNNPREVNANSKYKKIIM
>TED_pol#LTR/Gypsy 1499-4732 [Autographa californica nucleopolyhedrovirus]
HKRRIPINATDGEVLVEEQMFCNCIVHECVTMVKDGRGYVELENPTPNDVIFYLDQPASAELFNIKCTQVEQSQRVDDVL
SRLRTDHLNEEEKANLLRLCSRYSDVFYIDGEALTFTNKIKHRIRTTDEVPVYTKSYRYPFIHRQEVRDQITKMLDQGII
RPSDSAWSSPIWVVPKKIDASGKQKWRLVVDFRKLNEKTIDDKYPIPNISDVLDKLGKCQYFTTLDLASGFYQVEMDPQD
ISKTAFNVEHGHFEFLRMPMGLKNSPSTFQRVMDNVLRGLQNNICLVYLDDIIVYSTSLQEHLENLERVFQRLRESNFKI
QMDKSEFLKLETAYLGHIISRDGIKPNPDKISAIQKYLIPKTPKEIKQFLGLLGYYRKFIPDFARLTKPLTQCLKKGSKV
TLSPEYVNAFEHCKTLLTNDPILQYPDFTREFNLTTDASNFAIGAVLSQGPIGSDKPVCYASRTLNESELNYSTIEKELL
AIVWATKYFRPYLFGRKFKILTDHKPLQWMMNLKDPNSRMTRWRLRLSEYDFSVVYKKGKSNTNADALSRVEIHTTEIDE
IDSVIENIKELSSMINNPSETSRPQRQTENTDEIRQNSTTDTVHTSDEHPILEVPITNEPLNRFHRQIHLTVVGDIKRRP
IVTKPFESHTRIAIQLSESNLEQDVISAIKEYVNPKVKTALIINPPLKMYSIIPIIQKTFRSSSLNLVLTKVELENVKEY
LRQQDIIRHYHDGKTNHRGINECYLALSKRYYWPRMKDQITKFINECTICGQAKYDRNPIRPQFNIVPPATKPLETVHMD
LFTVQNEKYITFIDVFTKYGQAYHLRDGTAISILQALLRFCTHHGLPITIVTDNGTEFSNQLFSEFVRIHKIIHHKTLPH
SPSDNGNIERFHSTILEHIRILKLQHKDEPIVNLMPYAIIGYNSSIHSFTKCRPFDLLNGHFDPRDPLDIDLTEHILQQY
AQNHRQQMKQVYEIINETSLANRTALIESRNKTRESEVEYIPQQQVFIKNPLASRQKVAPRYTQDTVLADLPIHIYTSKK
RGPVAKARLKRVPKGNTLLQDSAATDNTCDASSRDKT
>Tor3-5_env#LTR/Gypsy gi|49035823|gb|AAT48683.1| envelope protein (Tor3-4_env was already taken as a name) [Oikopleura dioica]
MELYQTGSQIFPLSETRIIEELGIAIEPIKSYHFFDDFTSTPFIRSYAEPCGTLTQEPPTKFCNGSSLYYRMQNLKALHE
NCNERWNETILELHEFANPPTDSARTRRGAIAVVSTFVKTIGALLNTMTFLADLVLPKLLYKKGSNLVNAKFVSGSMHMR
TFDSETLANDQWQKFRCEFETQNLANYQAIQADNVLSKFQEKVASESIQLAIGEIPDSLDLVESFILVCKQVPGNTVKFC
TEALLRKTLTFDFQGLHLELDQQALYNALILRIPKRSRIFEQSVSYRITNLGTWDELGNYIRVDLPDTIIQSKTGNFYAL
DSSHCQSTMCPVNAASVSVASECLKSLLSSAPSLEKCKVEKLASPEGCAITTMRSGTLVRSPKGLFLSEGHGNGPLSVKF
GNETKFLNQSGRLYCGDTSDDSEIGQTYVIRGPSQSPAMSIKNIEKPKILDLALNLTDLSTALSQELKVETRISELENDM
RPFSEIGVTLPIVLVSQLGLILISISIYHFSSVLVSKIRNVKSYILNPCPPAPPALPMYISTGSLEPKSPQTNKDESDDA
QRAYPILPPSSLANTEI
>XILON1_ZM_orf1#LTR/Gypsy 255-1268 [Zea mays]
MARLRHTARKSVIPFLPSRLAERPLRRPVAGQSSHLERLHHRLREEQERRRQEQRSSSLSLHQEIESVRSCSPVLSLEPP
PAPPLGAPASGVAAGGDPDDGGGDDSSSHDTDFSANPEPEGWVARPITRDAARGCHFHDALDTLLRRAFDRHTWSVEYRC
VVYQHIRGVYPDRWEATCLVRCPEDSLQGAEACLKHYFISERDSAEAAMQDAARGALSQYCSVFGGAADGLDLKYYPRRS
SGSTGGVIVSPVGEGNPRLSSTVNLAAVLNTELDHALDELSRARAEIALLRAERAERRFLDGGSPAPVGTQHPYRSPQRG
HQSYGNPACKTKINLEP
>Tor4a_pol#LTR/Gypsy gi|49035810|gb|AAT48675.1| pol protein [Oikopleura dioica]
MLRMQKFRSYWQKLLEAAEWRASNQYATVAASPSSVHGPKKPVIGTQPGQVSVPMISVNKIGKQFYVNIKIFDSNVRFLV
DTGSQLNIIRKKNVPKNKKIEKTKIEVMNYSGGRIEIFGKVEAEIVIDGTCWGKSEFFVVSDELSPILGVPALVDNEILI
NLKRMKLIQSGPVERFCKLNRIEVLAEEEQIVSFKAYSQSTCTFRPKTEMLIDLHVPDINSTKNLFFEESNLGDCKLQLI
PSYQMVENKDKIFRVLVINPSESSIKIPAGTVFVHLSEIFEIAKLKESSNRDRLKNITVGKITSPKIKNEFYTLVNKYSY
LFLESDDPLPACSIEKFSIITESPQPISTHPYRTPFSVRNELRSILDQFLENKLIEPCSSPWNSPSLLVRKKDGRFRLVI
DYRRLNDATLQMHHPLPNLEDSISYLEKSRVYSMCDMIKGFHQIDLDEDSKQKTAFSNEFGQFQYTRMPMGCKNAPSFFM
RIMDKALLGVKKTEIIAYMDDLLCHSQTEVEHIKILEKLFQILAVNNLRINSKKAAFFTDSVNFCGYDISNGKICPSQDK
IEAIQKLKIPRTKDAAQSLFGALNYHRRFIRNFAELALPISKTYRSSFAWTEKATEALEILKEKICENAMNLKIPPADEG
NFVLETDASDKGYGGVLYICESDLSNDSHCHNSNCLIPVCYNSGNFSPVQQNYTIVEKELLSGKLCMEKWAIYLAFKKFQ
WITDNSNIKYVRTLRTNNQKIARWLTDLQSFSFTISQRPSSKMKISDFLSRHDKNSINQIKLGESDFSEIQKMDETLGAI
FKFIRIDRWPNNPKGDILFYCSMRKNLKILESGELALIEENVTRICVPKDIENEIIEEYHNYCHTGIDQTFSKIAKKYVW
PRMNMAIREFIRTCDFCQKDKPNFHPNRAPVLSFRTPNGPYEIYGFDLITLPPTDFGNKYVMVMIDFFSKFAYCEPLKSR
NSSYLLSKFRNVIFKNPFFPKMVVLDNAREHSELAKFMTNNNIEPHFTPPRHPSSNGQVENFNRTLKSRLRAKCKYENWD
LVLQEILHDINASEHSVTKKSPFFIQSGAECPHNIFDNNYRNYNLDRKTKFEDIQKLIEEEKNKRMAKFSNPKFNAYNLG
DLVLIKNFESKKPAFLGPFKITSKSTAGTWYTVESDKKTFRRHADHLKIYNSRINDDNCPNTSNPQNLENRVSESPNYRA
TYQGTGFSGPHFVAEEQLNIFDNNEEIEKMLDECARDMTNKISSTIFSEWLFSTADSLYASDSSSDSSITSDQNSVISGI
DNLEDHQIQELETENTQTEIVQDNSSEYNDLESNISDEYEFEPNSNFEVTVDSESEPETIINSELEASPHLISYDKLEIT
ENRKREREPSDNPTQAQKMPNLEINLETPNSSPKIKRTNLMIKFENDDRDFFSRLDDKFQVINAEHEVEKGCVLKLGELT
KETLLYICSRFRLKNEETEKVSELRIKIREYITNNHPNWRKSTSGEFLFFSVLNFNEQKTLYDMSRTELKVLTSQFELPI
NIQSKNKTEIIACIENIFSKLHPNHPRNDNDLIFGPEI
>MamGyp_gag#LTR/Gypsy 94-1275 [Mammalia]
MFGTMAVTLLEDWCTEMGVDSQRSLLVWGIPVDCDEAEIEETLQNALKPLGRYRVLGKMFRREENANAALLEFAEXVNFS
AIPRRIPRKGGAWKVIFKXPISDXEFLKKLNLFLEREGQTVXDVARVLGYENTPVAPSLDMPPETWAXVLGQAVGKAIQP
IAEATXYRKLRXFSGSATPAPGEEAFEPWLGXTTEMLQEWQVPEAEKRXRLMEXLRGPAFEVIRVLKANNASVTVAECLR
TLEQAFGNVESRRAVQVXFLNTYQKAGEKVSAYVLRLETLXQRALXRGALDSGSVDQARLEQVXAGAXLSXTLRSKLQLT
GXRPPPNFFQLLKLIGGGRGRRRKRLLXSAXKGSXVQXGXXPWHRPRPWRLXQMRTXTAXESLDXXSTGFREAG
>LycEPRV_gag#LTR/Gypsy 1198-2970  [Solanum lycopersicum]
MNKEEFAVDEKTYENQDGMIIKIVFSNLGRRYKKIGNNLYLMLEKETAKLEDSLTAMVRITKENEEIDKSREIEKIKTQA
KQEVQNLEEIKNTRISELEKELARLKLLYENKQKEKDKELELTNEIKQMEQKLNEDLNKDIEVNEIDGNENDQQSEISDI
SETYTEILEQINKSKKLEINTGDMNRPSTSRVKTPDNSPRNSPRRTPPTYYTESYQQSDRNNAIWNSRLNKNWTPKPANE
QYNFLDLDCVADINKAILIWIGNMSKQLIDNKIETAKTPRYIERTFVGTTKLWIENLPSESLEVLRNDKKMDGSASATNI
DILDKYESAIRNEFGGMTTDIREQNREKIINRQLMTKLAICKMCYLEEYTCAFKEYYYKAKYNLDEAKEIRKQYYTKLPE
PFSTNVIKDWNNEGIIDTLGSRIKFLNQWFIQLCENQKEKLKMEKVLNKNLSCCKNKIAPQFGCTTKKQKSKRYKNYRKK
KSIYKYKQPRRRYYVKNYKIKRPYRPKRKISQCTCYNCGKIGHIAKDCKLPKNPKRKQIAELIIDNEKYMQIEYIDYELS
ENDSIYEVSDIETENEEENINIDNNETDEEI
>Mbcv_gag#LTR/Gypsy 62-1051 [Monosiga brevicollis]
MSSRTRSRTGPPGQGTHELNLESDTEPDTDPVAEPVAEHVMEPMTTMAPLASHVIQGFRANLQKKSQRLQTFGFDPYFSA
YIAVTMHMNHQLKANLAATWSSHWDHVMVPFLEGALHRNLASPDTTPASLEDARAHLHKQFGFHLGVAALARMLDASTSN
FTGLAEFDEWVQAVDCMFQHEPLEYTMLTKLQMLCKLQRQCTCSRLVERLATAAHQATSGPATTLTRIVKEALDGYVPTR
DTLFSVPSNRTAHKGPTIHSAAGPKAANKQAASSPSRPPLRIPAQLRNSEEFTKLNKSDKQARHTFARKHHLCYHCFADD
HQSKACPKN
>Ogre-MT4_gag#LTR/Gypsy 2590-6057 [Medicago truncatula]
MLAAEQENAQLREELVNLKGEMERMALMMETMMAEREQAAISNSTPVVVVTAAPEGPPQPSPTTTTTIGLTQPLITDFSS
GNMATMGNSGFRPLGPQGPFATPQYSMPSGYPWGMPIATNGVFGPGATEMPFAQGQQTSAHFQMSQPIPQATMTQAGPTV
HVGPQHEEQIYHSDSIMGDDKAIDWEERFGALEKKMSNMRGKEAVVQSIYDLCLVPDVNIPPKFKMPVFEKYQGDTCPQN
HLTMYISKMIAYKNNVPLLIHCFQDSLTGPAHTWFMGLKGVTTFEQLAEAFMQQYKYNTYLAPSRKELQSLTQKDKESFK
EYAQRFIQKAAQIRPPLDERELSDLFYETLSPCYSEKMIVCASQKFTDLVETGMRIEEWARKGAAVSGSSSGGSSGVSSS
GNKKFGNGYPKRNAQEVGMVAHGGPQPVYSNHPFVANITPQMTAPQNPNYQSPRPQGPAPYYPPLYQPLYNLQQLSQQPY
YPQQPYQQRPYNPPQQQPRPQAPYNQQNQKQQFDPLPMTYGALLPSLLAQNLVQTIPPPRIPDPLPRWYRPDLHCIYHQG
APGHDVERCFALKKEVQKLINSKELTFTDPDAVAQNNPLPTHGPAVNMIQDDQEEARILSVGDIKTPLVPIHVKMCKATL
FNHNHEACDICLMDPRGCIQVQNDMQGLLNRRELVVTREPESKDVCVVTPVFRARRPLVINPNSTKPVGTPLVICVPRPT
PTTAQKAVPYKYEGTILEPGSETTSPVVVDNIAENSRILRSGRIFPTVGPKSVSVPVDEPVKERNAGKGKAGEQAKEFDF
EDADEVLKLIKKSEYRVVDQLLQTPAKISIMALLSSSGAHRDALRKVLDQAFVDYDVTLGQFESIVGNVTACNSLTFSDE
DLPAEGNKHNQALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGTRRSVYGEVDLPISV
GPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSRGKLITVSGESAFLISNLSAFSVIGGSSSDGPSFQ
GFSAEESVGKIETCMASLKDARRVIQEGKTGGWGQLVELPENKRKEGIGFLNSKPGMFDPTRGSFHSAGFIHDSPETNAI
LDDAPGGVTPVFVTPGGACCNWIAVDIPSVTPRSK
>MICROPIA#LTR/Gypsy 64-3992 (1 frameshift) [Drosophila fruit fly genus]
MQNRNLAELVKIMQKTPAREQQPSYDVKLPKFNPDAACVEAAKWCSTTDIILTEHPLKGSKLITALSNCMEGTASQWLTQ
ISYQGMTWQEFQELFLQRFETEETPAATFLNLLNSRPTAAECYAVYASRLVTQLTTKWRNMEIEEIAVTTVLAHMANIDS
RLQRVLFTSNVRTRSKLQAELKAFTFDKKRHARDDNLGPDQKNRKASPVVCHFCSKPGRRIAECRSKMRQDRRAKPQREK
SNVTCYRCGQPGHFSNQCPKNGTAAKQDVTQQKTVNQCCVTEPKGSLHQRGEIYPICFDSGAECSLIKDDISSKLSGKRI
NNTVMIKGIGGGSVCSTLQILSEVTINENIMEILFHVVPNEEMRNDILIGREILKQGFYVILTSDNFKVVKSKTVNNCSV
TERSFTLSDIDTELVDNEKAQLIELLEKHSTSFTNGIPHTRVNTGEMKIRLIDPTKTVQRRPYRLSPEEREVVRMQVSEL
IRCNIVRPSCSPFASPMLLVKKKNGTDRLCVDFRELNSNTISDKYPLPLISDQIARLRGANYFTCLDMASGFHQIPIHPE
SVEYTAFVPDGLKNAPSVFQRTVINALGDLANSFVIVYMDDIMVVSPTKELALERLKTVLNVLTKAGFTFNLAKCSFLKT
TVQYLGYEVRAGEIRPNVRKIASLSSLPPPQTVSGVRQFIGLASYFRKFVSGFSQLMKPLYSLSSGSGKITWSAELEEIR
LKVVTILTNEPALVIFDPQYPIELHTDASACGYGAILLHRIESKPHVIEYFSKTTTSVESRYHSYELETLAVVKAVKHFR
HYLIGREFVVYTDCNSLKASRTKIDLTPRVHRWWAYLQSFNFEIQYREGKRMAHVDFLSRNPLSPEHILSINKIPEKRVN
LSEISSTWLLAEQRLDLEIIEIVNKLESDELAENLAKTYDLRKGVLYRKVQRRGRTSYLPVVPRAFKWSVINQVHESIMH
LGWQKTLDKVYQYYWFAKMNKYVRKFVSNCITCRSVKSSSGKVQAELHSIPKTSIPWHTIHIDITGKLSGKSDLKEYVIV
QIDAYTKFVYLSVTLKIDAESCVNAMKSSISLFGVPDRIIADQGRCFTSSKFSEFCVSQKVELHLIATGMSRANGQVERV
METLKNLLSVVESSQRSWQDALGEVQLALNCTISRATDASPLEMLIGKQARPLGLVPPCETECEIDLATVRAHATENMNS
LASYDKSRFDSSRAAVDKHHVGDYVLLRNEERHQTKLDPKFRGPFLVTEVLEGDRYTLKSLTSNRSFKYCHESIKMPDAE
IPNELNENVEQ
>LATIDU2_TM_orf1#LTR/Gypsy 337-1095 matches BAGY1_HV_orf1. Perhaps part of gag. [Triticum monococcum]
MEPTRQVVRHTTAIGASGSPAVLVEMMTYLGYRWHPEYTVYEEYQDFNQEQYRAVVHLYSREYDSTTVLHTAHGVGVTID
MAVHDAAYAALTRLRGEYQELDTSPFRHIAIASDVGAEGYYTAAYSTVTREPFYHQNLVLHADGLDRANRALRHELYTTR
QHLYRALTLLHPFVLSGDLSRSAIYPARTVMPQGVGWPDVGGYSPALGPLLPPAHRVPHQSIRGPQATHVEVFPSHHYQL
SGYTYLHSTAWD
>Gypsy_6B_pol#LTR/Gypsy 1874-4915 [Drosophila yakuba]
MKFLLDTGASKNFIRPRKELKGVRPVDSPFEIHSIHGTTIVTKKCFVSIFNLKATFFILPDFTIFDGIIGADLLTQAGAS
LCLASAQLKWGQEVEKISFHKCTDVNFTNVECADAPPLVKKAFLGMIRSRKNAFADPNEALPYNTSVVATIRTTSEEPIY
AKLYPYPMGAADFVNNEIQDLLKNGIIQKSVSPYNNPIWVVDKKGTDEAGNQNRRLVIDFRKLNERTIPDKYPMPDISMI
LGNLGKAKFFTTLDLKSGYHQIILAENDREKTSFSVSGGKYEFKRLPFGLRNAASIFQRAIDDILREQIGKTCYVYVDDV
IIFSENENAHVKHVDWVLKTISDANMRVSVKKSSFFKKSVNFLGFIVTSDGTTTDPEKVRAIKEFPEPKTVFEVRSFLGL
ASYYRCFIKDFAAIARPISDILKGENGSVSRHRSRHIQVQFNEAQKNSFEKLRNILASEDVMLRYPDYKKPFHLTTDASA
YGIGAVLSQENRPITMISRTLKDREMNYATNERELLAIVWALAKLRHYLYAVKDITIFTDHQPLSFSVSDSNPNAKIKRW
KGRIEETGAKVVYKPGKENLVADALSRQQINAIEEQDAESCGATIHSEISLTHTIETTDKPLNCFQNQLILEEARFPLKR
SFVLFKNKKRHTINFTDKESLLNDLADAIVPKGVNALHCDLHTLATVQDDLVRRFPTTKFWHCKNRVTDIFGVEEKREII
LAEHNRAHRSAQENVKQVLTEYYFPKMAKLANEIVQNCKTCAKAKYDRHPRKQEIGESPIPSHVGEMLHIDIFSTDKKYF
LTCIDKFSKFAVVQHVPSRTIEDLKPALLQVMNFFPKAKVIYCDNEPSLKSHTITAMLDNHFGVSITNAPPLHSVSNGQV
ERFHSTLLELARCLKIDKGMSDTVEIILLATTKYNKTIHSVIDKRPVDAIQECTDDTQKRIADKIKSAQDALRSRENASR
QNRVFEVGEKVLVKTNRRLGNKLTPLCEEKAIQADLGTTVLIEGRVVHKDNLK
>Gypsy-133_GM_pol#LTR/Gypsy 2303-5881  [Glycine max]
MMFTISLTSSSIIICSLSFCISISMHHVAFMVSKSSLTLCSLLQKGGESISRRPRKVARRILHKPTRIYNTRANRKRMDI
VEQENQSLREEVATLREGMDRLTTMMSALLSAQNSQAAAAAVEQPLVSTTPLSTVTSPPLFLPPGCTWGMPPPVCGSPQP
AVSEVPPPFAQQSAPVPQPSTSFPQAAMTYSAPLIHTIQQEVEPIFQAENVVAFDKMEELQERFDGMQREVEALRGRDLF
GKDACELCLVPNVTIPHKFKVPDFEKYKGNSCPRSHLVMYARKMSMYTDNHKLLIHFFQDSLTGAALKWYMNLDSASIRT
FNDLGEAFIRQYKYNLDMAPDRDQLRAMTQKEKETFKEYAQRWREVAAQIVPPLEEREMTKIFLKTLSQFYYEKMVASAP
TDFTEMVNMGVRLEEGVREGRLTGESAPAASNAKKFGGHFAKKKDQEVGMVAHGKPQQNFTPYRQVANVASTIPNPSYHQ
QRPHYPYPYPPQQYPPQQYPPQQYPPQQYPPQQYHQPQYPQKQQNRPQTPQQPYHSQNRQKTTFDPIPMKYADLLPALLA
KNLVQVRTPPRTPDVLPPWFRHDLTCAFHQGAPGHDVENCYVLKNEVQKLVRANLLSFKDQNPNVQANPLPNHGPAVNMI
QDCDEDGVILNVQHVRTPLVPIHIKMCEAALFDHDHAACEICPVNVKGCPKVQEDVQGLIDSRELIITRKDKEVCVITPE
FQRLEISYNSGESTTTPLVISLPGPMPYASLKAVPYKYSATMLEGGQEVPLPSLTPAISVDNIASDGKVLRNGRVIPTLF
AKKVNDPAVKQVTVNGPGTRKEVGQSNGTSKNSDHDEILKLIQKSEYKVVDQLLQTPSKISILSLLLNSEAHREALMKVL
DQAFVERDVTVNQLDSIVGNITACNNLSFSDEELPEEGRNHNLALHISVNCKSDALSNVLVDTGSSLNVMAKSTLDQLSY
RGPPMRRSGVVVKAFDGSRKSVIGEVDLPITIGPFVFQITFQVMDIQAAYSCLLGRPWIHEAGAVTSTLHQKLKFVRNGR
LITVSGEEALLVSHLSAFSFIGADETEGTSFQGLTXEGKKPEKNEVSFATWKSAQKVVQEGTGVGWGKVVQLLESKNREG
LGFASSAGSATNSVGSSSITSTFCSAGFINNSPEANAVLEDAPEEIVLAFVTPGKLVRNWDAVDIPSVVHASK
>Gypsy_gag#LTR/Gypsy 456-1955 [Drosophila fruit fly genus]
KILHTLTKQIFVAYPIKDYYIAYLFLPYHLADQLCSATVYLWCANQQPMSWAHNYRKVKVEYESEDSWEEEQVGQALGRP
LDSATVDITMDPNQIQALIDNAVRQALSQQQSQFQTQLNSLAARVQSLQVEAPQIKIYEKVSVNPDVRCDIPLDIIKSVP
EFSGTQDEYVAWRQSAIYAYELFKPYNGSSAHYQAVAILRNKIRGAAGALLVSHNTVLNFDAILARLDCTYSDKTSLRLL
RQGLEMVRQGDLPLMQYYDEVEKKLTLVTNKIVMTHEQEGADLLNAEVRADALHAFISGLKKALRAVVFPAQPKDLPSAL
ALAREAEASIERSMFANSYAKAVEERAHSGANGKSRFQGKPNKEEQGQDRNPHFTKRPKNNGQTNKDTQAQAPQPMEVDS
SSRFRQRTEHYQNHPNESNAFKRRNSSERSTGPRRQRLNNVVQEAPKQKDPKEEYEKTAKAAVEEIDSENEYAPSDDSLN
FLGGAPGCRSLNDGWLGEP
>Invader2#LTR/Gypsy 43-4467 [Drosophila fruit fly genus]
MNISNASTAQLKGWLSEVKEPTTGTKRELILRLNNLTNEKRNQLKLLLKSEEEDFDGSSNNNVQKGKRNNGKDGEHKDDE
SDSEAGDSNEDGDEKSTVRNDKSNGEHDDKSGVRSYKNNSADGARNNNSGDGNSDENEVCDSEDGDEDGGGEKSNKECGK
NKRNTVGQAVQNMDLLLRMATEAVNEFSGDTCARKWILQVKNIASVYGIKEPYIKMLIVSKIKGKACMWLHADPERVLLP
TEQLAAELISMFGERKSKLETRRKFEERKWTASESFVAYADDKVMLAHGINMDKEELVALLIEGIPNQMLRNQARIQCFE
DIQHIKKAFAEVKLPKVDEADKKVASVNNNSSTLLRCFNCNSKGHWAKECRKPKREKGSCYACGEMGHFAAKCLKNKNGD
ENNYVRYFEINFMNNAKSKFITACLIDTGSPISFIKISKVPKDVIGVPVLSSFYGLNKSPLKTYGKILCYIMKNLNKIHF
NLIMVANESMNHDVVLGRDFMEACNLILNLDTLKMITVDKIESRCNKKSDKMLKEENMYNNNKTVSDSVSQGSSKSQMSS
DTVKNKLEKAVNAEISKVEREMFEINVIDDSIDYKIGDQVDHSIKCQFIEFVENCYVNKERPNEPEIRCEIQLRLNDLKP
FSCSPRRLAYTEKEKLQIILDEYLKNGIIKPSDSEYASPMVLVKKKTGDLRLCVDYRKLNKTMVKDNYPLPLIDDLLDRL
VNKTIFSKLDLKHGYFHVFVNKESMKYTSFMTPLGQFEFLRMPMGLKNAPAVFQRFINRIFEDMIRQDKVIIYMDDIMIA
SKGIKEHMEVLREVFDRLTRNKLELRMDKCEFLQSSVQYLGFLITSKGIQANDKGIEAIRDFPVPDKEHGVRSFLGLCSY
FRRFIKGFSTIAKPLYDLLKKDKEFSFEEKELECFETLKKKLVEAPVLGLYCYKDEIELHTDASAQGFGAVLLQKKEDMK
WHPIFYYSKATTKDEAKYHSFELETLAIVYALRRFRIYVQGKRFKIVTDCNALSLALNKVELNPRIARWALELLEYDFEV
VHKAGKHMQHVDALSRNTNILVIETNTFEDNLIICQAKDEKLKDIRKKLEKTEDKIFEMRNGVLYRKANGGRLLFCVPEE
MEEKILYKYHNELGHLGRDKVIDAIGKTYWFSNMKEKVVRHIGNCLRCVAFSPKSGKEEGMLHSIPKGNVPFEIIHIDHY
GPVDNGRIKKHLFVIIDGFTKYVRLYATKTTNTKEVILALKDYFRSYSRPKFIVSDRGTCFTSEDFAKFMGEYNIKHIKI
ATGSPQANGQVERVNRIVGPMIAKLTDIEKGLHWDAVIEDVEFSLNNTKQRSVAQSPSKMLFGIEQKGKVVDELRQKLEE
LDNVSEIRDLKEIRRKGSESQLKAQRDNEKRYNNKKKESTQYKVGDYIMVKNFDSTGGVARKLIPKHKGPYEIEKVLKND
RFLIKDVEGFQLARNPYQGVWSSQNIKHWIGSRK
>GypsyDR1#LTR/Gypsy 267-4463 [Danio]
MSVEEVLLHLVEISRKQNSISEQLTARQDRLEQQLRQAARHHPTPEVSAHHHLTKLSDLDDIDAYLHTFEVIAEREGWPK
ENWARMLAPFLTGEAQRAYFSLETPKNEDYKALKKEILARMGLSTISAAQQFSQWSYDEKQPVRTQAAQLSRLGRLWLLG
GDPSAVQVAEKVIIEKMMRALPRRLRTLTSMRNPESLATLVEAIELAEAHIARDNGERAALPPRRVSAPWRPVEGTARPG
GRPAVPSPMDEPMPTEPTTHSTPAWTAGCAVHRNIPPEAPTHKVQLEGKTQTATLDTGSAITLVHPKTLKYHHESKGRIP
ITCVHGDTRHVPARRVTIAAKPGSWRIEVGVVPDLPVSLLLGRDWPGFDELLTHHHAPSARSKKKNKPRAHRDRKPALMT
TESDRGGESSISANLYFDLFQQITAGGDFGRAQREDETLKHCWPQVRIIDGNERLPSPHPLPHFIVENGLLYCVAERRGE
KKTLLVVPRTKRETVLELAHTHPMAGHLGAANTVKRIRDRFHWPGLDGEVKRYCQACDICQRTSPQRPPPSPLIPLPIID
VPFTRIGMDLVGPLPKSARGHEHILVILDYATRYPEAIPLRKATSSAIAKELFLLCSRVGIPTEILTDQGTPFMSRLMAD
LCHLLKVKQLKTSVYHPQTDGLVERFNKTLKQMLRRVVAEDGRDWDLMIPYVLFGIREVPQASTGFTPFELLFGRQPRGL
LDVARQAWEQEPAPQRSVIEHVRDMRERIDKIMPIVKQHLTEAQRAQQRLYNRPAQPREFHPGDKVMILIPTTTSKFLAS
WKGPYTVVERVGPVNYRVRQPGRRREEQLYHVNLMKKWVAAPGHLVTFAEETLPVVHIGEQLSPNQKAELQALVGQFKDV
FSEKPGRTSIIQHNIITPPGTIVRQRPYRVPEARRLAIDEEIQKMRKLGIIEPSRSPWSSPIVMVPKPDGTLRFCNDFRK
LNEISKFDGYPMPRVDELLDRLGGARFISTIDLTKGYWQLPLSEDAKEKTAFSTPGGHWQYRVLPFGLHGAPATFQRMMD
ILLRPHQPYAAAYLDDLIVHSESWEEHLSRLRRVLLDLRRAGLTANPKKCHLGLAEARYLGFHIGRGLIQPQQNKVKALQ
ETPQPTTKTQVRAFLGLAGYYRCFIPNFSSIASPLTDLTRKGQPERIRWTKEADDAFRALKKSLTSSPVLHAPDFGCPFI
LQTDASDSGLGAVLSQVHGDEEHPIMYVSRKLTPAETRYATVEKEALAIKWAILELRYYLLGRKFTLVTDHAPLQWMATA
KNNNARVTRWFLSLQDFNFDVQHRAGASHGNADGLSRLWSGWAGLSKHSTPPLNTLLFLRRTPRTRTTLRGGECSEPCNT
TSPWAQIHTSWISHQPRIAHSWTSSARERYKPAPHRRK
>Ogre-PT2_orf1#LTR/Gypsy 686-2677  [Populus trichocarpa]
MKRILGHSQNIDEAAFFGKYGRLLEIAKIGVLNPAIKALINFWDPDYRCFSFGNVDLCPTIEEYGMLMEFPKHLHQVYFP
LRNDKVIPELSKLLKIPHLSRFLEKNGSGLKWKFLEVELEKKKEQYALVLERDRLIALGIYGLVLFPSLKGVISLEAAAA
FVEYENTHVNPTTAILAETLLTLNHFRKTGKGAVRCCTQLLYIWMVSHVETKKPIFNNFWWFNQKPLKIVEEEELGILGD
QGWMKKLQELPSSNFSWKAPWVKSVDVIVSCGQKCWVPLIGITGYVSYAPALVIRQLGGIQHIPRTVGLAEFSGFFKDQS
AREVLETIKQDWSQLTLIQKESLRDPSSSEGYEKWRNLTLIATPKKPCSEDGPSRIEERSLKRKKVSNEEDLMEQIERLQ
IELGKSKGDKAALERMMMEGDKSRVFLNEQLESKDAKIGMLELQLSKGKAVIEESEKERGRLILDLMQSSSELEALKADF
DGYQENVEYNQDKFLHVKAELLDRIEKHDELNKKYMMIESRLAELQEFERKGNEEEVVKADLAAKKIEIRILKVKFDKER
EKVKQLTNRLEVSEKHKEQIDTNNNTLNRNNMVLIEKMAKVDEQMDEAAIHARIIRANARRVGRDIFRYRQSLAETDAFL
EKIENRGLAFLPVARDMDEEED
>RIRE3_orf1#LTR/Gypsy 184-990 via tfasty with RIRE8B_orf1, 1 stopcodon.  [Oryza sativa]
MAGSVTRRGLDMTGFVLELRGMCVVLGYPHGVDYQARPLPEQEGDDAEPHAAWEVTAVILSGSPERTSLAVTAGGDSFPA
ACQSAALLAIGTLHxRYPDELQHSPYRYHHRRGGARDYATFRDASSEDDVTIVHLARMVEAYDAARIDFHQMVRRGMVEN
NLKILELRQENLQLKKDLNAVEAQLHQLKIAQGEDSRPKRRRVFRSQKITARKSTSRPELVRQSLAWTCFVETPRAEPAP
VVPQEGEASGVGSTEDALLLTFRPGPSQQ
>QUASIMODO_gag#LTR/Gypsy 406-1413 [Drosophila fruit fly genus]
MAQPSEQIMILSELHLNQALGQIRHISTFDGSTRELASFVRRVDFVMSLYPTTDKRQHSVLYSAIERQLSQHAQEVSQLQ
QCNTWAELRSVLIDEFKTQIPYEELLRRLYNTYWSGSIRKFVEELENKMFEISSKLSLENNYTNTTLYTAAMANTIKDVI
YKRIPDRMFMTLARYDITTTTLLRQVAQREGLYDTIVLNTEKAKAKLNSPSTLQSSSKNNGSQKNKGNNNDQGIKPYYIQ
AQQSQNRNNYASNNSKKVESNQATYNEFKQKLEQGRAQNALNFQKPTSYSTTNQPQKRQRESSSGQSKMDTSENFHQLAS
GSESEVEEEHTHSYK
>RLG_scDEL_1_3_gagpol#LTR/Gypsy 2049-6446  [Saccharum hybrid cultivar]
MSYNLRRGRGNEEEEQPPPPPPPTPAELMQTVVEGQRMLADAMRQLANREARPGRQGPEPNQYSDFKDFLDTKPPLFKEA
EEPLQADEWLNTIEQKFHLLRLTDELKTEYASHQLHGPAGIWWSHYRSTLPANVPIAWDQFKTAFRGNYIPPGLMAIKHT
EFMRLSQGNKSLTEYLQSFNSLARYATEFVDTDAKKIASFKRGLGPKLMKTMGTSKCTTFNDFISDALTQENNNTIYSAS
KSRKRVLEASASQSRASAAPRSSPRPPATNAKFRPPQKKVPMKTGFRKAYTVALPKSNAGQGSSSVPPSNMPCWNCNKPG
HWSRNCPYPKKNVNQGSRQGHAHYNSIEEIPSGEVVTAGKFLVDQHPAVVLFDSGASHSFISPKFASKFAHKLHTVEGVG
YCISAASGNISTNKVVGNLKFEIEGRSYSLALLVLPGLDIDVILGMNWMSQNGVLIDTSARVVMLRDPTDQKGFLVQLPR
KVELSGEIHAMQAKALAEIPVVNEFPDVFPDDLPGLPPDRDVEFKIELLPGTAPISRRPYRMPPNELAELKVQLNGLLKK
GLIRPSSSPWGCPAIFVKKKDQSLRMCVDYRPLNAVTVKNKYPLPRIDILFDQLSKAKVFSKIDLRSGYHQIKIRPEDVP
KTAFSTRYGLYEYLVMSFGLTNAPAHFMYLMNSVFMPELDKFVVVFIDDILVYSVNEEDHAEHLRIVLTRLREHQLYAKF
SKCEFWLREVPFLGHVLSDGGIMVDPAKVQEILNWKAPISVHEVRSFLGLVGYYRRFIPDFSKIAKPMTRLLQKDTRFVW
TPECDAAFHQLQTLLTSAPVLAQPDIEKPFDVYCDASGIGLGGVLMQEGRVIAYTSRQLRKHEVNYPTHDLELAAVVHAL
KVWRHYLLGNVCNIYTDHKSLKYIFTQPELNMRQRRWLELIKDYNLQVHYHPGKANVVADALSRKSHCHSLIETDFYRSR
LLHPAVLYNITVSCTLKSRIIELQKTDTGIFHIKRKMKEQETTQFRIDEEGVLWFKDRLVVPKDRELRNDIMSEAHSSKL
SIHSGSNKMYYDLKPLYWWTKMRKEIAAYVARCDTCCRVKAVHMKAGLLQPLSIPGWKWEEISMDFIVGLPPTVKNHNSI
WVIVDRLTKSAHFIPVRVDYRPTDYAELYFNQIVRLHGIPRTIISDRGPQFTARFWEHLHHLLGTKLVRSSAYHPQTSGQ
TERVNQILEDLLRACVISSKGSWEKWLPLAEFSYNNSYQESIKMAPFEALYGRRCRTPLNWIESGERRFYGIAFVEEAEE
QVRTIQKHMAAAQARQKSYADRRRKPLEFEVGDFVYLKVSPMKSVQRFGVKRKLAPRYVGPFQIIGKSGAVAYKIQLPPE
MSAIFNVFHVSQLKKCLRVPEEQVPLGDIRLESDLTYEEKPVRVIDTQERVTRSKVVKWYKVMWSNQGSESDATWEREDY
LRDGYKEFYEKWYASKSRDEIFIRGE
>ROMANI1_p1#LTR/Gypsy 110-841  [Triticum monococcum]
MKDAKIKYAQPDEGTPFGFHLKEVTKYMNIGLPSFTGTFNATLPEEERWKIQAHVPGRTFAPITKPIDSVFNAPTWSLGR
SMAAHITIGRIGEVYQEDLKDTIYQICGRRDEQWELVSTKKDRSITAFIQELNQHIPRHENQMCNDTMELKNAKTRIIKL
EGELKATCKDYMDEIVALSRHNVDLKQEIEELKRELASRKEDMYVACPDNYIIIDDTDSDPSEPEFEDEAGADIMESSTG
SNF
>RLG_scReina_2_1#LTR/Gypsy 1054-5114  [Saccharum hybrid cultivar]
MYGVPAHLWVKVSGMHFTGAAKRWIQSLDRPTHLIPWPEFCSLLLERFARNQHDTLLRQMFHIYQITTVIDYVERFSSLI
DQLKAYNKTPDMHTYTTHFVDGLRPNIRSVVALQRPENLDTAYALALLQEEVSEQEKKHEYPRFPNNQGFKTNFKNAVPR
QPQADKATETVTGLATATPTPADKLADLRKFRRAQGLCDRCAEKWFHGHKCPPTIQLRAMEEFWDALVVDDIPDSPDTHS
EEQSFALSLDARLGSTGGRTIQFHGSIHGSPVVILVDSGSSASFLADSIASKLTLLQRTHLQASVRVANGHIMRCSEVIM
DCQFTINEHPFSHDLRILQLDSYDLILGMDWLEKHSPMQVHWQAKWMLLPYHDSSLLLQGLAAPASTDMVFQLHGVDVPD
SAVSETSLPSDITALLADFPSVFSMPSALPPPRAYDHRIPLVSGATPVNIRAYRYPPTLKDEIERQVRDMLDKGFIQPST
SPFSSPVLLVHKKDGSWRFCVDYRYLNAMTVKSVYPIPIFEQLVDELGSASWFSILDLHSGYHQIRLQSGEEFKTAFSTH
AGHYEFTVVPFGLSGAPGTFQGAMNSTLAPLLRKCVVVFFDDILVFSNSYQEHIQHLRAVLTLLAQDQWIVKLQKCKFAQ
QEIHYLGHILSSRGVHTDPDKVAAVLQWPTPTNVRELRGFLGLAGFYRKFVKHFAIIARPLTNLLKKHTLFIWTDEHQTA
FRTLQQALCSAPVLGIPDFTKPFAIETDACRTGVGAVLLQNGHPLAYVSKPLGVKTQGLSTYEKEYLAILVAVEKWRSYL
QLAEFEIHTDQQALVHLNDQRLHTIWQQKVFTKLLGLRYKVVYKKGVDNGAADALSRRLHSVDHCLALSVVTPSWCADLR
AGYDSDVQAKTLLTKLATNATSVPHFSLVDGLIHYKDRIWVGNNQQLQQQLIEQMHSSPIGGHSGIPTTVKRLQALFAWP
GLKKQVTQFVHSCPVCQQAKPKRVKYPGLLQPLQTPTAAWQVISLDFVEGLPLSHGYNCILVVVDLFSKYSHFVALKHPF
TALSVAKLFMQHIYRLHGLPTAIVSDRDRIFTSQLWRELFTLAGVELRMSSAYHPQSDGQTERVNQCMETFLRCFANAVP
TRWFDWLHLAEFWYNTTWHSSLQQSPFLTLYGHSPRQLGIDSSAACSISSLADWMHQKHAMQPLIQQHLARAQLRMKHQA
DKNRTERVFSVGDWVYVKLQPYVQTSVAPRANQKLAFRFFGPYKIEEWIGSVAYRLQLPTESAVHPVFHVSQLKGAIPVS
HSPSPIPVSFTGLQVPERILQKRVATVGSDVRLQVLIQWSGLPAALATWEDVEALRQRFPRAPAWGQAGPYRRG
>PYGGY_gag#LTR/Gypsy 602-1810  [Pyrenophora graminea]
MASGRVPLTTDDLGLYAATRLDEGAKEEDVDAQIRSWLSESNWPQEAIELTIGSAAKRAHEIRKGKVPQQAEGQSSQQAG
QQPQVQQDNVSQIMTQMMGLLGPMASRLEALERQRTDELHSATTQIRTPAPVPTKSKFPHPEPFDGDRSKYLAFRYKTKA
KLRHEYEGALSIAQDRVRKLVGVSGKAADVLLPWAETYQDYSSIDELWHFMDQQYDDPHQKSKALNQLSNLRQGKLLVRD
YHMEFNRLKIQLGERFGEAAKKSMFLKGLYTKLQEALATVDEDLLYEQLINKAIQTSDNLYRVSLTAWARQGHTLAEQST
PKTTQREASPKAIDWELTKVGQARLDKSKQEKHQFKCYNCGKSGYIARQCPNIVRARKAAPSPQHQEALEEDSSTDSGKE
QL
>Ogre-VP1_pol#LTR/Gypsy 7354-10837 via tfasty with Gypsy3_MT_pol, 1 frameshift [Vicia pannonica]
NINHTCRLVVNKSIESNNRTPSPNFAFPVFETEEDEEEDIPDEISRLLKQEERMIQPHEEPLELINLGSEENRKEVNIGA
LLDADVKSQLIDLLKEYVDVFAWSYQDMPGLDTNIVKHHLPLRPECPPVKQKLRRTHPDMADKIKKEVQKQLDAGFLLTS
EYPQWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDTLVDNTAKFNVFSFMDGFSGYNQIKMAPEDREKTSFI
TPWGTFCYQVMPFGLKNAGATYQRAMTTLFHDMMHKEIEVYVDDMIAKSSTEEEHLEYLLKLFQRLRKYQLRLNPNKCTF
GVRSGKLLGFIVSQRGIEVDPDKVKAIQEMPAPKTEKQVRGFLGRLNYISRFISQMTATCGPIFKLLRKNQGVVWTEDCQ
KAFDSIKEYLQEPPILVPPIEGRPLIMYLTVLEESMGCVLGQHDETGKKEHAIYYLSKKFTDCESRYSMLEKTCCALVWA
SKRLRQYLINHTTWLISKMDPIKYVFEKPALTGRIARWQMLLSEYDIEYHAQKAVKGSILADHLAHQPIDEHQSLKFDFP
DEDVMYLKMKDCDEPLPEEGPDPESRWGLVFDGAVNAFGNGIGAVIITPQGTHIPFTARLLFECTNNIAEYEACIMGLEE
AIDLRIKILDVYGDSALVINQIKDTYETNHLGLIPYRDYARRLLTFFNKVELHHIPRDQNRMADALATLSSMIKVNHWND
TPSVGIMRLERPAYVFTAEVVIDDKPWFHDIKRFLQTQEYPLGASRKDKKTLRRLSGKFFLNGDVLYKRNYDMVLLRCVD
RHEADLLIHEVHEGSFGTHSNGHAMSKKILRAGYYWLTMEADCCKHVKRCHKCQIYSDKIHVPPTLLNVLSSPWPFSMWG
IDMIGEIKPKASNGHRFILVAIDYFTKWVEAASYANVTRQVVARFIKNNLICRYGISSKIITDNGSNLNNNLMRELCEEF
KIVHHNSSPYRPKMNGAVEAANKNIKKIVQKMVITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIP
SMRVIMETKLSEAEWCQNRYDQLNLIEEKRMTALCHGQLYQTRMKQAFDKKVRPRVFKEGDLVLKKILSFQPDVRGKWSP
NYEGPYVVKRAFSGGALTLTTMDGDELTHNINADAVKKYFV
>Ogre-PT3_orf1#LTR/Gypsy 503-2851  [Populus trichocarpa]
MLNSSIQVLNQIMTKYLSFQEFGQESELTQVAEGKCPRIDASRLPCITKINHMVNDLGKLVSIMEYIDETIFERRYGRIA
QLMRLPVQAAAIKALLNFWDPSYRSFTFGNIDMTPTLEEYERILDFPNNSHRIYLRQRFEDTASEVVSLLGLGKISQCRV
AEGGFKWKVIEARMKKNAEEGKLGEERYRLVAFAIFGLVLFPSEIGVISLEAASVFIEYERDQINPSSAILGETMLSLNH
CRMHGKGAMRCCTPMLYLWIISHIETPRDIFNNFWWFDLRPLKVTMDETWKNWDEKAWIDKYAALPRSNFKWKAPWMNNA
ICTMSCGNKIWVPLIGITGYISYAPALVTRQLGGMQYAPRTLGLADFIGLFKHQPFLEEMKLIRQDWERPLMVKREEGST
FETSFSQNYAVWRNEELSEERGFSIPKHPESVIEQPKRKRTDIEEELRKQLEQCRIDLSKSKGQLRLLENQLEEENTMRV
YLNQQLEKQDKQLTSLKEWQKRAEVAEEIAKAVQAELRNRITEYDELSNKNGLTQKELAKVKRSTKGKMSADKEMVDSLK
KGRSILLKKVEVEKEKNRLAHLDIEEERRIRAQYMMQLEEERSSRKAAESDMRDYQKRAESSKGRMMALQSEIEIREEKL
KEIRSHYFEMEEELGKAKQERQECQDYMNNFTVQINSKIAELDLEKEELQRVRDKLARSEDMVRVLERSNEALGASNEVI
IADNTVFHDKIRHITKQVEQVARYAERLQRQATQVGNDASKYREYMAAITCFIGDLANRGNAF
>OPHELIA1_HV#LTR/Gypsy 21-590 [Hordeum vulgare]
LQNALLDHPLKKNEILDIFYNGLTDASRDHVDSCAGNVFREFRERTVEQAEILQNNILINDNAWTIPEPPPNPTPKKRGI
LFLSPEDMQEAKKSMQETGIRSEDVKNLPPIKEIHGLDNPIQVVDVNSLGRFDESDIPFDKPSSLYFDEFDNFVAKQQSF
NDYCSRHLERSTRMHSHLSACVDRNVNDL
>PIGY_PS#LTR/Gypsy 20-4603  [Pisum sativum]
MVEKPQTKGGMYEISSLDHVNAKVDALAQKIESLNVSPPATVVAVTQNCEVCGIQGHTPTDCQLLTGIQAEQVNYAQGNP
YSHTYNSNWKNHPNYSYKSNNTLYAPGQAPSQAPAIPPGYQKPTPSTPNNNVPRKSNLEIMMENFIASQQQTNKEFLNQN
VHTNEQIKQLASKVDALATHNKMLETQISQVAQQQAPTAAPTSTFPGQPQPNPKGHAHAIILRSGTEVEGPSDPRIENQN
SKKSTEEEGRPKEKEECNKETVENKEPYVPPPPYKPPIPYPQRLIKTKDAGQFKKFVDLLKQLNVTIPFTKAITQMPSYA
KFLKEILSNKRKLEDSETVTLTAECSAIIQNMPPKLKDPSSFSIPCHIGKFVIDKALCDLRAGISVMPLSICKKLEMGEL
RPTKMFVQLADRSVRYPVGILENVPVRIGQFYIPTDFIIMDIREDEVTPIILGRPFLATVGAIIDVKRGRLTFEVGEVKI
EFILSKFLKAPAIEDTCYFMDIIDECIKETKLENDDLSDYRVEDRLNQSLAITSDPTQCLKKPTLDLKTLPKNMRYEFLD
LELERPVIVNADLGKLETEKLLHILRKYPTALGYNITDLKGISPSICMHRIMLEEDCKTSREHQRRLNPILSEVVKTEVT
KLLEAGIIYPISDSKWVSPVHVVPKKGGITVIKNEKGETITKRIESGWRMCIDYRKLNKATRKDHFHLPFIDQMLERLAK
HSHFCYLDGYSGFFQIPIHPDDQEKTTFICPFGTFAYRRMAFGLSNAPATFQRCMMAIFADFLENIMEVFMDDFSVCGQS
FEECLENLERVLERRVKVNLVLNWEKCHFMVQEGIVLGHIISNRGIEVDKAKIEVIENLQPPKTVREIRSFLGHAGFYRR
FIKDFSKITKPLTGLLMKDAEFIFDNKCLEAFQTLKQALISAPIMQTPDWNEPFEIMCDTSDYAVGAVLGQRKDKKLHVI
YYASRTLDEAQMNYATTEKELLAVVFALDKFRSYLVGAKIIVYTDHAAIKYLLTKKDAKPRLLRWILLLQEFDLEIKDKK
GTENIVADHLSRLENLEPERTSINDDLSYDKLIANLEENRVDEQVETTLAVCVTPWYADFVNYLAAGVVPLDLSYQQKKR
FFHDIKHYYWDDPLLFKRGLDGIFCRCIPEEEVESIIQHCHSAPYGGHVSTSKTCSKILQAGLYWPNIWKDVHAAVKKCD
RCQRTGNISRRDEMPQKGILEVEIFNVWGIDFMGPFPPSFGNKYILVAVDYVSKWIETIASPTNDTRVAIKLFKNIIFPR
FGVPRIVVSDGGSHFISKILEKLLFKYGVKHRVATPYHPQTSGQVEVSNRKIKQIVEKTVATSRKDWSSKLPEALWAYRT
AYKTPIGTTPFKLIYGKSCHLPVELEHKAYWAIKNLNLNYKAAGEKRILDINELEELRQDAYENARIYKERTKKWHDKRI
SRKTFKQGDVVLLFNSRLKLFPGKLRSRWSGHFQVTNVFPSGAVEIKGKSIESFIVNGQRLKHYHYDENNEDSQVLHLDV
LSPKLID
>PEABODY#LTR/Gypsy 113-4465 [Pisum sativum]
MAGRNDDAMAAAMQAMAQAVQNLPNAGGDAGSRSLATFQRENPPVFKGKHDPDAALGWLKEIERIFRVMDCTPAQKVRYG
THMLAVEADDWWLETHERLTVAGEVITWDVFRREFMTKYYPEDVRGKKEIEFLELKQGNMSVTDYAAKFVELSKFYPHYT
GAGAEFSKCIKFENGLRSEIKKAVGYQKIRIFTELVDSCRIFEEDNNAHYKIVSDRRGKQHQNRGKPYDAPVGKGKQGAA
PAQRTSRGGAPAGYSLFPMLVRLVHKNNVMHCLKIKKCFPCGKLVHAIADCKHKEMICFNCGEEGHIGSQCQKPKKSQTG
KVFALTGTQTSSEDRLIRGTCYINGFPLVAIIDTGATHSFISLDCAVKLKLEISLEMFGSMVIDTPAKGSVTTTSVCLNC
PLSIFGRDFGMDLVCLPLVQIDVILGMNWLVFNRVSINCFDKTVVFPEIEEGKSLFLSARQVSEEVADGAELFMLLATLE
AKDKLVVGDLAVVCDFPDVFPEEVNELPPEREVDSRLICTCTRPISMAPYRMSAVELTKLKSQREDLLDKKFIRPSVSPW
GAPVLLVKKKEGTMRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLVGASVFSKIDLRSGYHQIRVKTEDIQKTAFRTRYGH
YEYSVMPSGVTNAPGVFMEYMNRIFHPYLDKFVVVFIDDILVYSKSEEEHVEHLRVVLGVLREKKLFAKLSKCEFWLEEV
SFLGHVISRGGVAVDPSKIEAVSKWEAPKSVAEIRSFLGLAGYYRKFIEGFSKLALPLTMLTRKGQAFVWDSKCEEGFQE
LKRRLTTAPILILPSSSESFEVYCDASLLGLGGVLMQDKQVIAYASRQLKVHERNYPTHDLELAAVVFVLKLWRHYLYGS
RFEVFSDHKSLKYFFDQKELNMRQRRWLEFLKDYDFGLNYHPGKANVVADALSRKSLHMSMLMVKELDLIEQFRDLSLVC
ESTHNSVKLGMLKLTSGILDEIREGQKSDMLLVDKLTLVNQGQEFRVDENGVVRFGSRVCIPDVIELKKSILEEGHRSGL
SIHPGATKMYHDLKKLFWWPGMKREIASFVYSCLTCQKSKIEHQKPSGLIQPLAIPEWKWDSISMDFVSGLPMTIKNFEA
IWVIVDRLTKSAHFIPIRMDYPLERLAELYIEKIVSLHGIPSSIVSDRDPRFTSKFWEGLHKALGTKLRLSSAYHPQTDG
QTERTIQSLEDLLRACVLEKGGAWDCYLPLIEFTYNNSFHSSIGMAPFEALYGRRCRTPLCWYESGESAVVGPEIVQQTT
EKIKMIQEKMRIAQSRQKSYHDKRRKSLEFQEGDHVFLRVTPITGVGRALKSKKLTPRFIGPYQILERIGEVAYRIALPP
SLANLHEVFHVSQLRRYIPDPSHVVQVDDVQVRDNLTVETSPMRIENPELKQLRGKEIALVKVAWGGPAGGNVTWELESQ
MKESYPELFA
>GB:B46189 GI:422537 orf within vasotocin gene (Tes1 element) (Mariner_Tc1-element) [Eptatretus stouti]
MGSQLQLFCNDGSNFSLGSCKQFLHVSQLLLISYKPSVCKKAVLEQIVLLHPLKHYLDNIALQEVVYCYHNGEKNTINKG
RQRDHYNPSKCRSFLWRNCKEAKVSASTVSYTIKRHLETAGNSDRKRSGRPKATTQSEDECLRFNQKTIRRWQNKKKRFA
WAMKHRQWTTENWKKALWTDESKFEIFVSSRRVFVRCVGKRIVPHCVTPTVKHGGGSLMIWGSFAGSRVGDLHRVTGTLN
RKGYHSILQRHAIPSGLRLVGQGFILQQDNDPKHTSRLCQNDLRREEQDGRLQIMEWPAQSPDLNPIELVWDELDRRVKA
KQPTSATHLWELLQQSREELSEQYLISIVERMPVCSAVISAKGGYFDESKISIKFCSTKRFHDFFLNLQLLVCSMLLFQS
IPKH
>Q9RMU6_HELPY/310-380 transposon family T35 Pfam:PF07282
MSVFNTLLEYKAKYSNKEILRADTYYPSSKTCSNCQKVKQDLKLKDRIYQCLECGFELDRDINAAINLLKH
>Q9HSY4_HALSA/184-253 transposon family T35 Pfam:PF07282
FRTLYEQVAYKAEAEGISVKQVGSAYTSQRCAECGFTADENRPTRNDFQCGKCGAEANADYNAAKNIGLR
>Q54132_SACER/310-380 transposon family T35 Pfam:PF07282
LGEFRRQLEYKTTRAGKTLVVIDRWYPSSKTCSACGHLLEKLSLSTRAWTCPGCRTRHDRDINAAKNILAA
>Q8YN93_ANASP/346-414 transposon family T35 Pfam:PF07282
WGSLKLKVKILSERAGVLVHEVKPNFSSQECSECGYISPTNRDKEKFLCEHCGHHADADIDAAKVILKR
>Q8YKG9_ANASP/321-388 transposon family T35 Pfam:PF07282
WGAFLQIMQAVAVRRGKHTRGVDPRGTSINCSGCGQRVEKTLAVRVHNCSCGLVIDRDWNSAINLLNY
>Q8FDH2_ECOL6/309-378 transposon family T35 Pfam:PF07282
WAEMRRQLEYKQAWRGGDVLAINPAYTSQKCACCGHTSKNNRRTQASFICTACGYTANADVNGARNILTA
>Y1635_METJA/304-366 transposon family T35 Pfam:PF07282
WNGLIEKISYKTIVILVNPAYTSTICPICGSRMESQEGQVVYCSNCLNSFNRQLVGCYNIFKR
>Q92LC6_RHIME/4-113 transposon family T34 Pfam:PF05717
SGVVVYVSCQPVDFRKGAASLMALVRDGGLDPFNGALYVFRSKRADRVRIVWWDGSGVCLYSKTLEEQSFCWPGISAARI
RLDHSQLMALLAGLDWKKIRPTKVRRPLLT
>Q8TZH0_PYRFU/310-371 transposon family T35 Pfam:PF07282
WKKIVGKLSYRVPIEFVNPAYTSSTCPICGSKLESRNGLVECFNCGFKADRQFVGAFNILMR
>Q9S2F2_STRCO/264-333 transposon family T35 Pfam:PF07282
FAQLGAFVEYKAKRAGVAVVHVDPRNTSRQCSECWHTHRTNRVTRARFVCRSCGIVLHADHNGSRNIAHR
>Q9HKW8_THEAC/244-310 transposon family T35 Pfam:PF07282
FYQLEFFIQYKAKMNGIPLTYVDPRYTSKECSRCGYIGIREDKSFECPRCGHVDHADANASFNIAVR
>O66931_AQUAE/327-401 transposon family T35 Pfam:PF07282
HGKVKEYLEYKAKEYGIEVEYISEAYTSGVDSSVEGAVNKETYTPEARVKRGLFRTRLLGFLNADVNACRNLLKK
>YIS1_SHISO/2-84 transposon family T8 Pfam:PF01527
SRKTQRYSKEFKAEAVRTVPENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLER
DIL
>O52713_9PSEU/1-85 transposon family T8 Pfam:PF01527
MAAPKKYPDELRERAVRLYRESEPKPAIRRLAEQLNVHPEALRNWIRQDEADRGQGHDRPATDMAEENRRLRRENAELKR
VNDVL
>Q9ZGW5_YERPE/7-91 transposon family T8 Pfam:PF01527
KQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGMTPDNPALTPEQREIQSLRAQIKRLEM
EKEIL
>Q56240_THEAQ/5-87 transposon family T8 Pfam:PF01527
GQTFNTYSEELKREVVRLKLEEGWSYRQLREHFGIKTDAQIAQWIKKVQRGESLKDQRGVWNRKHFSSLEEENAYLKAQV
EYL
>Q48627_LEULA/1-75 transposon family T8 Pfam:PF01527
MIRYKKEFKQSLVEMHNQGRSYTDLSDEYGPSVDSIRNWVKLYAVHKVDGEKWTQADVNALQKENDKLREELEIL
>O68434_LEPIN/1-85 transposon family T8 Pfam:PF01527
MKGRRKYSPEFREQAVNRTLNGSFTIKEVAESLGVSYFVLRQWKAEHLKKKETEQPLTDKQLKESEELKRLRKENVRLKD
ENAIL
>Q27281_DROVI/68-140 transposon family T5 Pfam:PF01498
HSKILKQINENPQTSLRQLALDLKNDCNKTVSHETVRKVLKMHKYSSQIARKKPLLSAVNIQRRLNFSITNVN
>TC1A_CAEEL/2-74 transposon family T5 Pfam:PF01498
DRNILRSAREDPHRTATDIQMIISSPNEPVPSKRTVRRRLQQAGLHGRKPVKKPFISKKNRMARVAWAKAHLR
>Q24258_DROME/69-141 transposon family T5 Pfam:PF01498
CRQILGVVAKNPSASPVKIALESKNTIGKQVSSSTIRRRLKEADFKTYVVRKTIEITPTNKTKRLRFALEYVK
>TNP7_ECOLI/1-968 transposon family T7 Pfam:PF01526
MPRRSILSATERESLLALPDAKDELIRHYTFNETDLSVIRQRRGAANRLGFAVQLCYLRFPGTFLGVDEPPFPPLLRMVA
AQLKMPVESWSEYGQREQTRREHLVELQTVFGFKPFTMSHYRQAVHTLTELALQTDKGIVLASALVENLRRQSIILPAMN
AIERASAEAITRANRRIYAALTDSLLSPHRQRLDELLKRKDGSKVTWLAWLRQSPAKPNSRHMLEHIERLKSWQALDLPA
GIERQVHQNRLLKIAREGGQMTPADLAKFEVQRRYATLVALAIEGMATVTDEIIDLHDRIIGKLFNAAKNKHQQQFQASG
KAINDKVRMYGRIGQALIEAKQSGSDPFAAIEAVMPWDTFAASVTEAQTLARPADFDFLHHIGESYATLRRYAPQFLGVL
KLRAAPAAKGVLDAIDMLRGMNSDSARKVPADAPTAFIKPRWAKLVLTDDGIDRRYYELCALSELKNALRSGDVWVQGSR
QFKDFDEYLVPVEKFATLKLASELPLAVATDCDQYLHDRLELLEAQLATVNRMASANDLPDAIITTASGLKITPLDAAVP
DAAQAMIDQTAMLLPHLKITELLMEVDEWTGFTRHFTHLKTSDTAKDKTLLLTTILADAINLGLTKMAESCPGTTYAKLS
WLQAWHIRDETYSTALAELVNAQFRQPFAGNWGDGTTSSSDGQNFRTGSKAESTGHINPKYGSSPGRTFYTHISDQYAPF
SAKVVNVGIRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFGLMHLLGFRFAPRIRDLGETKLFIPKGDAAYDALKPM
ISSDRLNIKQIRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAG
LNKGEARNALARAVFFYRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATSALRGNGTALDDTLLQYLSPLGWE
HINLTGDY
>Q45703_BACTM/1-976 transposon family T7 Pfam:PF01526
MPVDFLTPEQEEKYGCFCDTPTSEQLAKYFWLDDTDKELIWNRRGEHNQLGFAVQLGTVRFLGTFLSDPTNVPQSVITYM
ANQLHLDAQSFSRYRNKRSQWDQMQEIRSVYGYKNFTDKSTHWRFIRWLYARAWLYNERPSVLFDLATARCIEQKILLPG
VSVLTRLVSTVRDRSAENIWKKLSSLPDNVQKKQLENLLQIDQKTKKTYLERLSNPPVPISVTGIKNTLIRLQELRQLNT
ENWDMSRIPSKRLQQFARHTVAVRSQAIARMPDQRRMAMLVAFAKMYTQSAQDDVIDIFDRYLTDLFAKTYRKEQKERLR
TIKDLDKAARQLREACVILLEHTDPSVHPKTAVFEKISEKDLIQAVQIVDSLTYSPNQTLAYSGLLQHYGIIRKFLPLLM
EEIELQATPAGLPILQAWNFVKEHGKSNKKRWKNAPLAGLNANWSKVVIDKDSGTVNHRAYTFWMLEQVLEALHRHDLYI
VGSEKYGDLRAQLLQDEEWKSIRPSILRSLDWSIDSYESLTPLKEELDKTYHQVIENWENNPAVQIDTFAGKERIVLTPL
DKQPEPESLQKLKQQIHTMLPNIDIPQLLLEVNRWTGFMDGFRHISEAKSRINELPISICALLISQACNIGLRPLVQDGV
PSLERDRLTWIEQNYFRAETLSESNAKLVDFHSQLQLAKMWGGGEIASADGLRFITPVKSVHTGPNPKYFGSGRGVTYYN
YTSDQFTGLHGLVIPGTIRDSLYLLQCVLEQNTNLQPKEIMTDTAGYSDIIFGLFGLLGYQFSPRLADISESRLWRFDAN
SDYSMLNNLSKSRIREELIHRHWEDMLRVAGSLKLNKINATHLIQALQYNGKPTMLGRAIGELGRLFKTRYLLLYLHDEN
YRRKILNQLNRGEARHSLARAVFYGKRGELHQSYREGQEEQLGALGLVVNAIIVWNTRYIESALQVLRNRGHTIDNDDIS
RLSPLGHKHINIVGRY
>Q48909_MYCAV/290-374 transposon family T20 Pfam:PF02371
EVITSLPGMGFRLGAEFLAAVGDPTLIGSADQLAAWAGLAPVSRDSGKRTGRLHTPKRYSRRLRRVMYMSALTAIRCDPH
SKAYY
>O61675_9NEOP/26-109 transposon family T1 Pfam:PF01359
YFDVPSKNKNKVWLFENEQTPVQVRKSRSVKKKMIAVFFTRRGILERIVLESQRTVTASWYINDCLPKVFQKLQEIRPNS
RMDT
>O53511_MYCTU/57-142 transposon family T20 Pfam:PF02371
ELIASIPGIGVGASATVISEIGADPAAWFPSAEHLASWVRLCPGNHESAGKRHHGARRTGNQHLQPVLVECAWAAVRTDG
YLREYY
>Q9ZUQ3_ARATH/516-588 transposon family T23 Pfam:PF03017
RRTNPKCLLVNWSGPEDIIGEGRILSSDPDDVVNDCRLGPVDLKVLVEAANTPDAFLWRPAPNMYTITEAVGQ
>TRA8_YEREN/210-297 transposon family T20 Pfam:PF02371
QRLLTIPGIGTITASLLATKLGDGKNYLSSRDFGASTGLVPRQYSTGGKSTLMGISKRGDKNLRRLLVQCARVYMQRLEY
QSGRLAEW
>P91718_DUGTI/37-117 transposon family T1 Pfam:PF01359
HYDNPKRQRSYVKPGQPAKSTPKPNIHGLKVMLCIWWDQKGVLYYELLKSGQTITGELYRQQLIRLKQAIAEKRPEWTTR
H
>P97204_ACTAC/23-122 transposon family T17 Pfam:PF01797
VFTPKYRRKAIYGRLRTDIGSILRQLCDYKNVEIIEAHAMKEHIHMLLKIPPKLSVSSFMGYLKGKSFERHANLKYNYGN
RHFWSKGYYVSTVGLNTKVV
>Q877N1_LACPL/156-255 transposon family T12 Pfam:PF01610
MLCIDEFRSTDKQMSFIAVDAQTHDIITILPGRKNADIKDFFLNHYSKRHRDRVTRVVMDFNSQYQPAIRTLFPHAKLVA
DNFHLVQMALRSLNQTRVQL
>Q05409_ONCFA/37-117 transposon family T1 Pfam:PF01359
YFQNPKRKKSWVTPGQSSTSSARSDRFGKKTMLCMWWDQKGVVYYELLKPGETVNTERYRQQMINLSHALIEKPPEWAHR
H
>O18586_9NEOP/37-117 transposon family T1 Pfam:PF01359
YLENPKRKKSWVSPGEASTSTARPNRFGRKAMLCVWWDQTGVIYFELLKPGETVNAVRYQQQIKDLSRAIAENRPEYQER
Q
>O61446_DROSE/161-241 transposon family T1 Pfam:PF01359
FFVNPKRKKSYVDPGQPVTSTALPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNTARYQQQLINLNRALQRKRPEYQKR
Q
>Q9SK21_ARATH/270-342 transposon family T23 Pfam:PF03017
RKSHRKCVFVDWSETDENVGEGRILSSDPDDIVNDCRLGPTDLKVLVETAYQPDAFLWRPAHKIFNMKEAVGH
>Q54132_SACER/9-283 transposon family T2 Pfam:PF01385
RVRAYPAPEQAAQLGRPSGASRLVWNKTLAERHRAYHAHGRKTSCREADAALTAWKKTDEPAFLSEVSSVPLQQTLRHQH
TAYANFFAGRARYPRFKPRNGRQSAHYTRSAFRLRGGKLTLAKHTAPLEFVWSWDDETLATLNPTMVIVSREPDGRWYVT
LAVDTDDPEPQPETGSAVGVDLGVKDFAVLSTGEKIANPKHLDRKARNLARYQRQMARKQKGSNNRRKAKTKVARAHREI
RCARTDFLHRTTTNLVREHDAIAIEDLNIAGMARS
>Q9AYG4_ORYSA/1-180 transposon family T28 Pfam:PF04195
MAEERESFESQWAPSDVTEENLKEMVAHDVLPAKEIIGWRPACGEAFPTPDMHEVVVFSHFFYDGFSLPTLKFFRGILEF
YGISLHHLNPNSIVHIANFIHTCEAFLGIRPHFVLFRRIFFLKPQPNKSKPCVVGGAGFQLRGTLSQKYFSMPFKTSNKG
WHANWFYVQNPEPALPEYSY
>Q9UXS3_ACIAM/17-301 transposon family T2 Pfam:PF01385
IYLTYSLENDKKEESRVLLENYKTLLQKALDWLWEKVKVERKEVKKGKKVFTKVKVKLPKKKKVYKILRDELEKINKLAS
TYVDKAINDTYSILRSWRRRAEKGQASLSKPTLRKVYVRIKSTLRKVDGESVRITVRPYEYITFSWSHTWFSRRVKGLEL
GEPIIKEDKVYLPFRYKLPWFTPLDFLAIDSNLYTLDAYDGEKFVTFSLKGLYSMKYGMELKRSKIQSFASKHGRKGKEL
MRKYSHRERNRVLDYVHKFVNKLLEMYPMTTFVVEKLNKQEMFED
>Q9F805_ERWAM/9-297 transposon family T31 Pfam:PF04754
GKNATSTPHDLAFKQFLTHPDTARDFMRLHLPPHLQTVCDLNTLKLESGSFVEESLRPYFSDVLYSLQSTTGDAYIHVLI
EHQSTPDKHMAFRLIRYAVAAMQRHLDAGHQKLPLVIPVLFYTGRRSPYPYSTCWLDEFDDPALAEKLYGGDFPLVDVTI
IPDDEIMGHRSMAALTLLQKHIHRRDLADMLDNLTTLLVTEHITGQQLVSLINYLLQAGETSDAETFVRKLAQKVPQYED
KLMTIAQQLEQKGIEKGRAEARAEALTEGEHNGEHKAALRIAQTMLQQG
>YJIP_ECOLI/2-271 transposon family T31 Pfam:PF04754
TNFTTSTPHDALFKTFLTHPDTARDFMEIHLPKDLRELCDLDSLKLESASFVDEKLRALHSDILWSVKTREGDGYIYVVI
EHQSREDIHMAFRLMRYSMAVMQRHIEHDKRQPLPLVIPMLFYHGSRSPYPWSLCWLDEFADPTTARKLYNAAFPLVDVT
VVPDDEIVQHRRVALLELIQKHIRQRDLMGLIDQLVVLLVTECANDSQITALLNYILLTGDEARFNEFISELTRRMPQHR
ERIMTIAERIHNDGYIKGEQRILRLLLQNG
>O85621_ECOLI/127-325 transposon family T25 Pfam:PF03050
LSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYGR
QGVELRRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWF
AYSPDRKGIHPQTHLACFSGVLQADAYAGFNELYRNGGI
>Q9ZPG8_ARATH/188-337 transposon family T24 Pfam:PF03004
GETLWGTMCAYWDTEAAQKRSRTYSKARLSDRNGIGPHVHYSGPKSFQEIQDELEEKLGRPVHLGEVFIETHTKSDGSFV
DQKSEKIAQAYQQNVRDRLSALEASASAVSDGSSRPPELTLDDYTAIFLEVRCFSIIISLRVQFNILSLM
>Q9ZUQ3_ARATH/697-769 transposon family T23 Pfam:PF03017
SKENMKCKLMDITGKKRVVAEGRWATNDPKQKVHFVPLGDNVVKVWVDIVKVSDVKVWRPSDEVEIMEDALGT
>Q9S9S0_ARATH/115-226 transposon family T24 Pfam:PF03004
WRVMVAYWRIPKIKEKSEKARSSGLFNRDGLNPHSHRSGSRSYPKVQDTLEANNEDSSFIAVTKKHIKKVDGTYVDEKAR
LSDGENSTMNPLTIEEKNEIYVQKLAEGLQDT
>Q9S134_ECOLI/138-336 transposon family T25 Pfam:PF03050
LSPLGCDVSEQLELISSAFKVIETQRPKLACCRCDHIVQATVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQSEIYRR
QGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSEMPPAVWF
AYSPDRKGIHPQNHLAGYSGVLQADAYGGYRVVYESGRI
>Q9SL53_ARATH/185-331 transposon family T24 Pfam:PF03004
DPDVWKGLVQFWQDPKSEKKSNNSRNARYHDPDGKGIYKHRSGQTSYKARARKRCEKTGETTPDFLELLDETHRKADGTF
IDGKSEEIYKQVTSRIEEEESHMCSVDNPESTGSGGLSVHAKNKIFTEVAPRKKGRIYGVGSLQFEA
>EnSpm12_SB_p2#DNA/CMC-EnSpm 6796-8655 via genewise with EnSpm5_SB_p2, 4 introns (7347:7423, 7585:7768, 7930:8020, 8195:8268) [Sorghum bicolor]
MFHLFLTIFLSHFVGARIKMVGGGGMRKLQAVYQQTAGLLKGGGKGKGAAGGSGGGGKGKGKAGGSGGGGGGRRGRPRRR
EPSPSPSPPPQDEDEEDEEDEEEVQQQEEEEEEEQQQQEEVDEEEDGEDDEDEGEAADGTASGSAGGGSSSSGNPVVYLR
GPSRLPQRGMPADRLPVLRPTGARSFTIVQDGFHSRKANGILGILCRRHFPGIVLHAGKNEPAYTIEHYTAARDVLDPSE
VAYNACGKLIKDMHYECRVQAVVTYHAQYLFRKVTKEQARTMSLTKEEYMKVPPWWCNTKIQCWEMMVDRWFDPEWQEAH
NQGRERRAMMQGPSHHQGSLSLDAWKAKWSNAHGGEQITNFQAYAMGHQTKYSTAARYDPAAPASSYSNPSVHARLTQYI
ETAKEVYGPEYDPATHDIDGEVVMRAGGGKVRGRYMIGHGSLDSGEVPSLSQIRARSTGTSAPIRQRPNTTMNIVADL
>EnSpm5_OS_p1#DNA/CMC-EnSpm 549-3968 EnSpm6_OS close. [Oryza sativa]
MHLNFCMKYLRSIFLSVTFLPLYNQMDRSSWMYEMRRTQPIFIKEASKFIDQAKEHALRENMTKIFCPCRHCKNQKLLVD
PGEILGHIMEYGFTANYNVWTYHGEFANPEDDDEELSFEMNEAENFIIEDMSRERMVVDVSTDSDDFDGGFDLEDMLRHV
EPEVLAGRSRGLENWQALEKASKDLLYDETKGCDKDFTVLRSVLELLRLKAKHGWSDTSFNDLMSLLPVLLPKPNFVPSN
TYQAKKLICPLSLGVEKIHACKNYCILYRKEYAELECCPTCGTSRYKTGNGPVDSECTDPDSDKGKRGKIPSMVMWYLPI
KDRLKRLYSNPTDVELMRWHQESRKIDGMIRHPADARQWKTFDAKHPEFAKDPRNVRFALSTDGMNPFGDLSSSHSTWPV
LLTMYNLPTWICQKRKYILLTILIQGPNQPGIDIDVFLEPLMEDMEELWKEGLRLWDEFKREHFNLRAIIFVTINDLPAN
FSLSGQIKGKTGCLICLEKTSYKYLTSSLKTVYMRHRRFLPQRHRYRKMARLFDNTVENDTAPVARGGTYVYEITKKIKV
VYGKGKKKTVKRKKADGDNGTASPFKKHSIFFKYLDYWKDLEIRHAIDVMHLEKNVFDSTVGTLLDIPSKTKDGLKSRND
LVDLSIRHDLHPVLLPNGKTEIPPACYSLTLDEKKALCKCLQGVRVPTGFASNIRKLVSMKDLSISGYNAHDCHRLLTVF
LPIAIRAVKPVHTKVVITKLCYFFNRISQKVFDPLELGPLQTFAVETVCQLEMYFPPSFLDMMEHLIVHIVPQIIELGPL
YLHQMWAYERYMLILKGYVRNRAHPEGSMIEGYTTEEAVECCMDYIKDANAIGIPVHRHEGRLSGRGTVGRKQFFDNDYK
KVSAAHNSVLQQLAIVEPFIERHLEEIKACFPGRSNDWISREHKRRFPLWLKDLNLPVGDSVEELTLQRLACGPSSIVNS
WQGYDINGFTLSTTTKDMKSTTQNSGIRVEAIDTSGEKRSYYGTIQEIWELDYGLNIQIPVLRCEWVKDTIGVSVDDYGL
TIVDHSKTGHKDDPWVLAERVAQVFYVKDPSDERKTIVISGKQQIVGIDNIEDPNDYNQFDDVPLFTDLPMRIKKVERTI
DEANMSYVRADGVAKVIKS
>EnSpm-1_ADi#DNA/CMC-EnSpm 1156-5559 via genewise with EnSpm-18_HMa, 1 intron (2044:2982) [Acropora digitifera]
MAGFFNCGFARVAARNSVYHENGKVIYDKGTRLQRFLGTFSESKEAFAVSQNTFDKRLPVLLKNFKKWRGESKSKYLDHF
SSSAWKSLSALKRGLHSISNCRECQVNHLLFQTQFPLKSNRLKGAADPVATSTKEAGNLRKTTKAVKPSKKAIRDTAKSI
YLNINEQFKNLYNINLADALTKVPETGLTHAKTKVQKQKERREIARRFKNGVEEQWSKVDCDTMLGTRQSFKQRDLQRKS
LYFESHEEAKIRTAKRKALEEAGLRKVKRHSPDSSSLDFDKAGLLQEVNAKKEGEKINFSALAKKYGVSEKTTVGNMVVK
EFLSKNDVNLEIFKPFRKKNPLPRRQLSKTFGGEITTPVPRTSAAIRETLRKNIANREYHLGEIIAPKTYQKLTLDSNGT
LKKECFTVSGRKIPLLEIRKTLLAKHEELGLVRDHSEAHYEGMTNEELETRLKEIGEYKEQPDGETTREELVNSLKHWER
TRHLMIWSDHSSVMNHGHTLLTVNAIYDPAFYYTSQELRGKDVQEMVEKPQIYLIARCRDTIEDQLLYSDTRLEDIQQLT
TKITSHNVFINEICRMFHGDHPSQEVESGEQLGGNFGCCGCTMSSTQYSDHVASLRAPQITLEERRKKVIAGPAGKERRN
GGVQPFQQMSKDDLIRECKGRNLPTDGLLKPALQRQLREELKGIQRVPALCFPDQSASMNDLNLTQYEVVPVEPLHDLKE
HINNILKELPKHLTDEEKPLFEEAIEAVLSTKEKLRGADYRLCCIVLALHLGSNCRLSIRRLLYSLAELCELLYTPSDKR
TPRFILHLHNVTFSHVVAMHKVFKITEVLTRRKLYGIYYHSIACHAPFTSRLISLSSVDTEEEERGFSTINAISKATSNG
HPEHIIPNCIVRIQAERKFKSTRSSFLEQQSKIGKFATNLPQFPDTVIPCELLDNELYQAHLEAISDFLLCGKGVWWHVH
EDGKEIVFHDGKGWPEFQDQGPPLHHFRSSSFESERDYLKAKWQECLNHGTLQLPIRKVKVYHTDGYLAYTEYHRVFRDE
EWPEPEDHATEENQTDADNQINLSLPGDQEGLEEQEESDVLVTSLAYTSVNDDTAELSEDDCDVVDDDHGTGKEGSLTTA
NYHTNSPGVPPTTDLQDESNSADNDVHQRAERILN
>EnSpm-2_NVi#DNA/CMC-EnSpm 137-2266 Probably a fragment. [Nasonia vitripennis]
LFNDTNFFESLNLTVDSSPAELLLMSLKYSVSNKLSVTGILNLLKFVNRLCGKNILPESKYQFDQLCKNENTLTLHAVCL
TCSMYIGTFEKSNKSVNCENCNSLIDVSNPSNACYFAIVNPSNAVRDYIESHENYYDYIVSERIHEPNVIKDIYDGECYK
NFLNNLNTIDRHAYATAVFNTDGAPVFESSNVSIWPIYIMLNEIPIHKRLNSTIVTGLWFGTSKPEMSVFLDAFVESMNH
LSTIGISATIKNQHRKIKLFTLLACVDTVARAPMNGTTLFNGKYGCDWCLHPGHYYGGSMRYPFNIPFPKERTTESVVEH
AREAVRTQKRVFGVVNASPLINLKNFNIIDGFTPDYMHCFLAGVASQFTERILQHVTVPDIQYMDALLISIKAPHAIGRL
SRPLSQRSNWKATEWENWLLFYSIPVLNTVLTNRKIMQHWALLVESLSICLGTRITYSELNRANGMLYKFVSEVEDMYSL
TAMTYNVHQLLHLVKSVHNWGPLWAHSTFPFEAANHKLLTAIHSAKGVVLQIIRYTNIQRTVQILENRLYPYCSKLVLDF
CQQITSPLARKTLKISCITYFGCGNIVPPNIALLFNVAKTTLIFSKMVLNGCLYATSEKINKRSCNYYAQLTDETFIKIL
YFLVDTESKVESTVCEVIKTRPNKYANVVKEVTNISEKICVPTSLIVKPCIFIDTKDGMYIIPVPNVISH
>EnSpm-1_PGr#DNA/CMC-EnSpm 257-2659 [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MRGDADHQMLQFFMNHTQGAPSGSTVLPCQQSERSVQPLFLEEDFCKQVMVQMAQSVLKNRLSKSGASDFLQAARENAIL
LSKIWSTKDKTPDVSRMVAQIPHTREAVFNRLGLNPDLTTQACCRKCFALYPLDDKENPCPKKCNQAFLSSYQTFCKWAK
EQAVKPECSQDLLAPNQKNKLKPLRTFSYMKLETWLKARLLESHFETQLDASLSANFLGSDQVMEDVWDGKVWQEFPETE
GGNGIYTKTSGNLVFSLYLDWFNAEGSSSLGSHNSVGAITLICLNLPPGQRYKVENIFLFGVIPGPKEPSLEQVNHLLRP
LVTELKAFWKGVQFQSTASHPQGRVIRAVVFPLIADLPALRKAAGFGSHAATLFCSFCLLDKKDLEETDQTKFPVRSNEQ
HLLHAKEWLALDSYKGRQSFMKKYGARWSVLNELPYWRPVDHCSIELMHALILGDLKDHSLRFLYLPSAAKQLQATQEKE
EEWQMDDHFTALPFTNLFPAEPKKNPGKRKRTEEPNDEPTSLKPAKRGRNTQPGPSLQGRQSKHQPNPGSESEDSSNQSS
ETTQTSHSYNLRARKQAIYNICNESADTEHSEDDRNSDCTERGPKRDRSLTPLGKEGGISHRLRADELEVVRRTLIHTTV
PSWVDRVPYNLGSKSHGSLKAAEWLILYKVYYTIALIPIWKKAYAECATEEEKERVSTLLESTTLLSRISHFLTSPKINP
RDLPELDDLIVQYRKCLQQGWPQQSSKPNLHLTQHYSNVIRSLGPPRSTAAWAQERVNGMLQRLPTNHHPCQFVFISLLI
T
>EnSpm3_SB_p2#DNA/CMC-EnSpm 1579-4232 via genewise with SPMLIKE_p2, 2 introns (3064:3235, 3643:3753) [Sorghum bicolor]
SGSTSTTGKSRPVRGPRKPLEGRHVISEFDEATGQPLGPHAKKYVGHCGYLVRDRIPISAREWKKKPSAPHISFVSDRDK
EEVWTDIGDHFTFDTNDEELKGRIREWTMKKMATLFQAWKKNLYNKFVKKNETPDFSTKAYVKLRPFWDDFVQYKTSEEG
EALVRRNKENAAKKKYHHHLGSGGYMSAVPKWERMEREMIARGVVPQTIRENWGERSKHWLYGHGGTVDPETGVLDWGPE
ISRAAERLVRARAAVASGQFKPNREKDELTYALENPEHGGRTRGYGAVPWYHSFQADQGTYRSRQRKKEEEAERIRKLEE
FVHSSQERERSREEWMQEEIKRQVQAALSXNDERGATSSQPADVNVSPPGQLKSSCASTEVPTVQADAKLRFPVDDLTEP
VTSCELHVPEGTGTKKVAVGVVNPIDRTRTPRIHGQPVPEGYARVSVDRVERGCGSVPLDIEGGDGEKTLGEAEKTFICW
RKRFIIIPGVSPPPPHALEDATATPSPPRRSPTPPRAAPTPPPPSPPPRTRSPTPPRAAPSPPPPPPQASKKRSAPAPKA
SVPHPKRSRXSGSLWPKAASEKLPYEKSDEELIASVASDVKAHFEKIKRNLKRSGTLKSHTSTYXRGAEEEGKGVPQLGD
TSRPLSPLIVADQYGSNVGVVQRKSGEPTLSEMDSLENYFVESGLPYSTIENIAAGLEFPRAEVVDEWRRNFAPGRSLMN
PKHLHVLGTQMFAINNWCMEASKGGVDWISVRIRNHHYFRGDDLILVQMGELHQLCHMDALDKSLVSCFCL
>EnSpm-1_DF#DNA/CMC-Chapaev-3 834-2488 via genewise with Chapaev3-1_HM, 1 intron (1432:1503), 1 frameshift [Drosophila ficusphila]
MASFRVYPCKTNPDRFCYVCAKYIFGGPGRSITVDVQNDYRECFGIPMQNQDKCWVPHKICATCRSGLTKLKSGSLQALP
FAIPAVWREPFNHDSECYFCVINTKLVSKKSIVYPEVASLAKPVRSALPSKFEDRVFSRPLTTSITSMSSQESHAYEDSD
AVKLFTQDEVDDLIKKLHLTIENSEYQASVLKCHNVCEKVVNLSTRNRQLATYFKEENAITYCHDVEGLFXGIHQIHEKS
EWRLFIDGSVESLKAVLVHNGNxKPSVPIAYAYKMKETYASLSGILSLIRYDSYKWRVCADLKVVAILTGLQGGYTKYCC
FLCLWDSRNRVEHYTKKIWPKRVDKMPGTQNVSFRSLVDNENIILPPLHIKLGLMKQFVKALDEDSLxFQYLKSKFPSLS
NAKIKEGVFAGPRIRKLFHDEQFQKCLNSVEVRAWNCFKNVVEGFLGSYRSPNYENLVKELLRSYEAIGATMSLKLNFLH
SHLDFFPANLGDTSDEQRERFHQDIKVVEARYKRKCAGHMMGEYTWFL
>Chapaev-20_HM#DNA/CMC-Chapaev-3 362-2050 [Hydra magnipapillata]
MSSSRRGCLNNPNAFCHICGEYCQESQRRNITNFVKQAYLAYFGMKLGDQDKSWAPHIVCKTCVENLRQWKNGQRKGLKF
GVPMVWREQKNHDSDCYFCLVNVKGINRFKKRKFEYPDLESARRPVPHSDDVPIPVFTTLPDLTVSDEEDMQNLVCEHAD
SGSEYEDSTSKQQQFSQEEINDLVRDLSLSKQDSELLASRLSEKNSLKAECKITFFRTREAALLPYFIQEEKIVYCRNIP
GLLLQMGLPEYRPEDWRLFIDSSMRSLKCVLLHNSNSYASIPILHSTKLKEEYENIRMMLQKLRYNEHQWSICVDLKMVN
FLLGQQSGYTKYPCFICLWDSRAKEDHWKKVVWPARENMTVGASNIINEPLVDRGKIIFPPLHIKLGLMKQFVRALDKDG
QCFKYICRFFPGLSMEKIKAGIFSGPQIRQIIKDEQFLYTMTDIEASAWKSFVLVVHNFLGNHKSPNYEEIVQKMLSDFK
TLKANMSIKVHFLHSHLDRFPDNLGSYSEEQGERFHQDIKVMEERYQGRLDTHMMADYCWSLQRDCPHSPHKRQSYRHRF
LMH
>ATEnSpm11#DNA/CMC-EnSpm Genewise with atenspm7 protein [Arabidopsis]
NRASPEYGEGANNFVEAPARRLGNPEDILCPCSDCRNVCHQPLGTVVDHLVIRGMDQEYKMNTCWSKHGDIRDHQRTDVQ
TSEFEAYDLIRTAFYQGEENLQSQTESGDQGSHVESKEEXEFRQKLIDAETPLYSTCPSYTKVSAIMALYRIKVKSGMSE
NYFDQLLSLVHDMLPVDNVLPKSTDEMKKFLKLFGFGYEMIHACQNDCILYRKQYEQLVSCPRCSASRWEKDKHTGEEKK
GIPAKVLRYFPIKDRFRRMFRSKRISEELRWHFSNASVDGSMRHPVDSLTWFQNTKYSTWPVMLVNYNMCPTKCMKAENI
MLTMLIPGPTAPSNNIDVYLAPLIDDLNDLWKEGIEVYDSYAKENFRLKAILLWTISDYPALRTLAGCKVKGKQACNVCG
KDTPHRWLKFSRKHVYLGNRKRLRPGHPYRRKKAWFDNTVEDGTVNRIQTGSDIFETLKDFRNDFGRLLDKKTKRSRTDL
GDEDLVLEEEYEEYTDQWRWKKRSILYELAYWKDMSVRHNIDVMHVEKNCFDALLSTLMQSSKSKDGXKARKDLEDIGIR
SHLHTEVRGKKTYLHPAAYWLSKTXKKGFCSRLAKFRGPDGYCANISNCVSVDPPIIGGLKSHDHHVLMQNLLHVALQGF
LPKGPRIAVTRLCNYFSRLCQRVLDPEKLLALEAEVVETMCEMERFFPPSLFDIMFHLPIHLAREARLGGPVHFRWMYPF
ERYIFLKLSFCTEFLQNSLPPQEEVNQNEDLETDENILEGRPLNKATEVTLTERERDIAHRYVLMNMAIVDPYIEPCYCK
MHLEELQAVDARCSKNETLLWKLHNDRFPQWIKEKTYKGYIINGNRFHTEDVRRKTQNSGLTYEAFSMCRSSAKDTRHQA
DIVAFYGVIKDIIMLDYHMFQIPIFNCSWANKGNGVKEEDGFTLVNLHLSQAAFLQDPYILASQAKQVFYSRESDLSQWY
VVMKAPPRGYHELETEEESVSQLLVHPIEDMGNQSSDDESFCARDDCEGLLVLEYNQDLPADDNAQHESIQEPIEEDTTR
VSNQSEEAQSHQSGTNKXRTRGPSKMRKLAKHLDDKVDVEFTELGEHFGNGSVKLSSFLGALVREHVLVILDDWKHLDEL
TRHALWEEIQGRFNLQEEWQKQAIFRQMGCLWRSHKSKILSKVKAAKTKLRVLELRPSNIPYVAVWSNWVKSRTSSTFKV
VFIVKFDFLNLDPRKVTRSKVWVAGHTHSDGRPVKPEFEETIEKIKSIDSEMDSTSNTNIREDVVSQVLGKDKPGRVRGM
GRGVTFSKLAFMQVRDSHVQQLEAKQAELISKLEDLQNVVHDLAGKNVYRVRIIDWTFDEVIAEGILCSTDPKEMVNNTQ
LGLNVAVVKVDLVIKGDAFLWRPSIEMSMMSEALNENIVWPIQKIQFISSSSTLSNTSGNINGGKQKCILLDINNFSQRV
AEGKVCSSKPADVVHHVPLGQNASKVWVEVSKIGDAKVWRPNSEIQFISDAIGTIVAWP
>EnSpm3_OS_p1#DNA/CMC-EnSpm 676-3897  (perhaps spliced to p2) EnSpom2_OS_p1 93% identical [Oryza sativa]
MYAKNLKRHSTEYRKGVINFMNAAEEDRIRRNSDYMCCPCADCKNENMFDSGEDVHGHLIQRGFMEGYTCWVKHGEQESG
SGAAADRSGAHNQEDENEHDMFIPSPLGGEMVDVDHDLLQDMLRDVEDPAQNERDGMKFSRLVSDSETPLYAGCKAKHTK
LSVTLDLMKLKASSGWTDKSFTDLLGILKAMLPVENTLPETTYEAKQVLCPLGLEVRRIHACPNDCILYHKQYADLDACP
VCKASRYKRKKSADEGNKSKRGGPAKVVWYLPIIDRFKRIFANPNEAKLVRWHATERRNDGMLRHPADSIEWRNIDRKHK
DFAADPRNMRICLCTDGMNPFGDMSSTHSTWPVLIANYNLPPWLCFKRKYIMLCLLIQGPRQPGNDIDVFLEPVIDDLEI
LWKEGVETWDAYGQENFKLRVLLFCTINDYPALGNLSGQTIKGKKACSDCKEHTRSRWLKKSRKMVYMGHRRWLPLRHTF
RRKKKIFNGKRELQPAPKDLSGDEVHNMVKDISNEFGKKRKRSKTKEKGMWKKKSIFWRLPYWKDLDVRHCIDLMHVEKN
VCESLVGLMLNIPGKTKDGLNARLDLQDMNIRSELQPIRDAETGKVYLPPACHTLSKDEKIAMLSCLKDIKVPSGYSARI
SKYVKLDDLKLVGMKSHDCHVLITQILPVAIRGILPPKVRHTIQRLCAFFNAIGQKVIDPEDLDGLQTDIVNTLCHLEMF
FPLSFFDIMVHLPVHLVKQTKLCGPAFLREMWPFERYMGVLKSYVRNRAKPEGSIIEGYTTEEAIEFCVNYMSDADPIGV
PASRHEGRLSGVGTIGRKRIRPDQASYAQAHYAVLQHMAEVGPYFEEHLAKIRDENLGRSDAWINREHNSRFNEWFKNRV
TMSTDVPNETVQLLGMGPSWTIDTWQGYDINGYTFYTVKQDDKSTVQNSGVRIDAFQDQVGSNTYYGRIEEIWELNYVKF
KVPLFRCRWVNLRTGVKADKEGFTLVDLSKVGYADEPFVLAKQVEQIFYIKDPSNKKMHIVRDGKRRIVGVDNVVDEEEY
NHNLHVRPHIDLDDDPQEPVAYARSDHTEGITL
>ENS1_Cis#DNA/CMC-EnSpm 470-2911 [Ciona savignyi]
MFKCSLEFCKQRFDTVADLLQHYREHIRFGSEITCPIENCNKKYRVLSSFSSHLSRCHSAKPQEQDNAASTSDSMNVPLT
NSENTFSYLATSKAVDDEFLEPVRLSHDIASIDTLTRKYALFYFMLQHKYFIPVRTVNQIVEQIKDLVLKYSSHVTNRLK
SILENYDIDDELVTSILNEVMNQDKFQEIHKTGPLRSIFSREKYFKANFIYIAPIAMRLNPEVVQDKETFQYVPILKTIQ
ALFTNNLVKHQFLNPLCPDGSFRDFDDGLVVKNNHLFSGSNKTLKIILYQDAFEVVNPLGSAKQKHKLLGVYYTLANFYP
WNRSKIDAFQLVILCKDQLVSANKCEDLFRPLINDLKILEKEGIDLPGFNEKVRGSIVCITGDNLGSHWIGGFTTNFSTS
SYICRFCSITRTEFNCYCLCEKPMRNTDSYNCSVQKVHDAGNSVHIEGVKSDSIFNELQYFHVCAPGLPPCLAHDLFEGV
IQYDIMLAVNYFIQQKWTSLSVLNKRIVQFPYRFHDRLCKPLTLSATSKKLSGNASQNWGFLRLLPLLMFGCVQNPEDPV
WQLVLCLRSLTEIIVSKFLTKGTVIRLSLLIKEYLYMRQMLFSTVPLRPKHHYLMHYPWSIMQFGPSVCTSTLRFESKHS
YFKRVIRNSKNFINVSYTLAHNHQLLQACLLDSSVFSTELQVVSYGNGQVSSRIQNSIIQCGYNLLKCVFVTKACFRGTE
YSTGMCVILSKENRDLHLGHIVSMFMFDNSIVLVVERCFVEFFPDFGIYKMVPYPYSTLFSCISIENLFSTWPLFCYTIS
DNKLFILPQCLNV
>EnSpm-3_NVe#DNA/CMC-EnSpm 1113-5590 via genewise with EnSpm-1_ADi, 4 introns (2013:2166, 2395:2513, 3511:3749, 3954:4139) [Nematostella vectensis]
MAGTFGCGFARVAVKQSYQKENGKLEKKIEQRWLSYLHKFGGEFQRVFHVDFTTFRKRSQALNNSIRRITPSARARYIEH
FSSFKWQSLTEKEKKKHTLRDCNGCLTHHYPMHSLLASIPNNVKKTIINTKPALALIKEAKKQGKGKNNPRASAKAAKSI
AKNICASISGPFEKLTGMTFAEAQTKVPSLGLQLKKSRNQLKQERRQRALTEKIHLQTLMAKQDCDVLLATRQSYSQREK
QRLALYFETKSEASSRVLKRRHLENNGKCKKKRHSPPPCEVDFDKEGLLGEVNDMADNTQINFSDLARRYGVSTETKLGN
MVVKEFLESEGVDLKRFQTYHRANAPRIRRKLQRMYGGEVTVPVPRTNEKIKETLQAKIESGEYVLGELVVPRTYKKLLL
QPDGSLKEESFTVSGRKIPLREIRRRELERQESLGLVRNHSDSHYASLSTAEVKQRLKNIGELVPDHEDAKEKLKRLEST
RHIMVWSDNSTAMNHGHILLLVQFLYDPAFFYTSDEMKEYGHGDVDVISLVEKPHVYIIGRCGSSEAEKLCYIETRVECL
MDMGHKCSTSTGREVNDIMRFFHGDGPEQQFESGEQKGGNAGCSACSGDTRMYSNLTYCFRRPELSLADRKAKVLAGPAG
KNKRNAGVKPFHNLKIKELEVECRARGIADFGCRKSLQDNLSQELGGIQRVPALMFAHQEKELEEINIGFYEVLPTEPLH
DVKEHISNIVEELPLHLEKQEKQEFERVKATVTGTKDKLRGTDMRHLCAVLGKQMRGVMSEKPQTVFDTLTEVSRLLYSH
PSKRCPRDILRLHNQSFLHAMTLKEVIKETKSLTDRKLYGRYFHSLVVHSPIQSRLVSGRSVNTEQQERHFNTFSAIAEN
TSSRRPGEIITPGLVRMQAELKLADQHRNTLSEQESKINSIAKSSSALSNSIIPNRYILRHPNDYQAHLERISDFLLCGE
GVWWRQVASGVEFFDGPQELGSRTAGPPLHHFRSQTIKSERSYLQECWDKCLTNDIPIPHYKVKIYDDDGDLKVSKLTGF
FNDDDKEEEEEDRAEECEETEAHIISMQEEVNDDETEEEADMKGYDEDIVDLQPQDEEEDGEVIEEKLDDLQTQCHINTG
SHEAIHQPPPEQPVPHNQSVSQAQSSFTLKSTLANNVLKCIPSDSHAVRTLDKARTQLREHPFDKDIQRKYETTLAKIKT
KVLSAHSQLKEEVMRWEKTFFLRKCTEPTSDDISEDPKISKVKQKLYLCRKLLKHWKITA
>EnSpm-16_HM#DNA/CMC-EnSpm 1865-4228 [Hydra magnipapillata]
MIIIFRVLIYDNYISESDPSFQRVTYEPTFLEMLNSVPIYSRESSGDSPGTSKSSTQSSFILQPQIMNVPATVQSPLSLE
IGVKVCCCGFMSENNARMDRHLGISSICKIVCKICNASFKSTRGVSRHICKKNEKAVLPFPKIKIDSQTTFAIKLCGQLR
VPSTTVNTIFSISANMLLNIRKLIKEEHFHTFDKYFSQVDILSNKYQREKLLNDLFDILKINEVLFAGGKGYNFLLFDII
NFLLQIDEFVQLLSRKDAEANYRTDFSTHKPLEFSLSLYCDDIELANPIGKHRKLHKLTIFYVQFHSLPSYMRSTLISVF
PLAVVPVKLFKSNKKGAYFQYLEDFITSCNLLNNGVTFNSTIGCVKLFLKFVIYLGDTLASNHICGFKTSFAPNVFRCCR
TCLTTNIQMSSIYREDMCMLRTQANHQQHILDLKSVKSKKSKLYWSRFYGINYESALLLITAFDIIENAPHDPMHILLEG
LVPHELCLLMRLHICEKRIYSLAALNSFIIQFPYSYSEARDKPNICPTTFDISGSQTSAQILILARIIPLFIGQYSNSND
PYYVNFLDLLQILQLTLSPITTYRTILDLETLIEKHNKSFTLLWPNNLIPKHHFLLHFVGQMHRFGPLKNQFCMTFEAKH
NKIKSVRWHNFKNIAKSVCQYLRWNTISNFLDDNGQLIPYPFTAKTQHLKKRIVIGSIVYQVGDIISTIDDSYQLYKITD
LQPNCVKVCIMTIDSYIPHKLAFHVRSTNTFKSIVLENLQIPWPLTKFTVDGTTLVVPRSKHCLIVS
>EnSpm-14_OS_p1#DNA/CMC-EnSpm 6005-8572 (may have more exons) [Oryza sativa]
METDRSWMYKGRRKRGEVTAEWISKTTEFLDKAFSRETGRAGVLCPCNYCNNTRPQTRDMMMKHLCKFGFRPAYTVWVYH
GETYPARESDICQSTEDEDRVAEIDRMDEMIDDVHDAYVSVEEEDPEPTAQAFFQMLSAATQPLHEHTQVSQLDAITRLL
AVKSQYAISIAGFDALLNVICALLPQGHKLPANLYEAKKVLSALNMPYEKIDACPKNCMLFRKENTQKTHCDNCGESRYV
EVEDSNGHKKQLTVAKKVLRYLPFIPRIQRLYMSESQAKQMTWHKNGHRYHTDKIVHPADGEAWKKFDRDFTGFSMEARN
VRIAIATDGFCPFGMGSSSYTCWPMFVIPLNLPPGVCMRQHNMFLTLIIPGPNYPGKHISVFMEPLVDELIHAWQQGVLT
YDRATKTNFIMRVSFLYSIHDLPAYGIFSGWCVHGKMPCPTCMEALQGKRLKFGGKYSFFDCHRQFLPIDHSFRSDSNSF
LSNTTVSNEPPLRLSGQEIRARLDNLVPAANGDKFVGYGKDHHWTHISSLWRLPYFHKLVLPHNIDVMHNEKNVAEAIFN
TCFDIPDQTKDNVKARLDQAALCNRPELNLVQKHASSQWVKPRADFCLNRAQKKEVLEWFQTLKFPDGYGSNLRRGVNLK
TMRINGLKSHDYHIMMERIFPVMFRGYLPTHVWEVLAEVSFFYRKLCAKQFDPIEMANMQSQVIVLVCKLEKIFPPGFFN
PMQHLMIHLPYEASMGGPVQFRWNYPIERGQKYLKSKVRNRARVEASIAEAYILDEISNFTSIYFADQVQTIHNPVPRYN
VATQSIDCSLNLFSIRGDSTSRGVPRHLTREEWNAAMLYVLTNLTEVDDYIGYEL
>EnSpm-18_HMa#DNA/CMC-EnSpm 806-4160 Genscan predicition 1 intron (141-1564). [Hydra magnipapillata]
MSIIDPLSCGYVKVIVFNLLMSKASLQQRIDEYNSIFSCQKENFAVSNDIHRRNFPKIKAKLCYLSKRHSAKKKIIMDTF
SLNAWIKLSLTEKCRHRFSNCQECVKLNANVLSLIPTNTKFYKKKASYLLSNEIATGNKENLISCASTLLDEANRKFKKQ
YFMPITNAIPLIPDSNLIQKPSRTDTKKLRNKYARLFKCSVEKCFEETAAVRAFGTEISLRKATKIRMNQSFETFANLKV
RNEKKNPNKLKDHTGNYTNKWNENDCWKEVVSYVPGTKINFTELAQKYNVINSNGEIAKNGGQIVKQFLSSKGVDLSCLK
YKGQGNRIIRRCKKKIHATDISIPAEPTIKKIKLNIKEKVSKGEYTIGELIIPQKFQILTITDDKSFKTTEVDVAGRKIP
LNHIRKTLAEKHKCFMRLHSESEINSMSDGKVKEELNRLNENDNSIHKLQDLRKKLLYFNRRRHIQVWHDGSTVNNHSHL
LFMVNCVYDKAIYYTEKEYFEIHGKKIDVQAQIEKPELYIFARCSSTDKQLMYTSTRNEDNRLLGESIDINGEKINDIMR
FFHGDAPACQFEIGQQKGGDYPCCACPININRSYDTAYSFYQPLLSIENRVKKLTLTQISRNKINKQQTKLYKNLPKHEI
IDELNERGIYFQYKSHKKILQQKLDNEMHGMQRLPALLFNEDFDDLEKLYLSKYEILPCEPLHDVKGHTSNLYEEISSHL
NTIERKLFKEMVSLSFDNKDCKRGIDYRKSLSKLVLTLKGKIDSRAYNVLLTMFYIQGILYGNELSRTIENILFLYNQTF
LHSIYLKELIKDKPIAVSQRKMYGKYQHNLIVHAPHMLRIISGISANAEEEERTFNTIKTINSSTTNHNSEHVILNTLLR
LQCHKSFNEGCKTQNHQHAIRKIVKDYERTETEIPFWIIEMYPWIWQGHLERISDYLSEGNNIWWFESKNGITFKDKISN
ISSKLQLHHFRSSTLMSEYINLKNIWNECLLNKTKIPAQKIKIESNEGTQVVNCNSLKKYIVLENKNPKIQTSTNDSFIH
FAQITEEPEKESSIQMQKIIRSKNLSMDQATSTPLFI
>EnSpm_OS#DNA/CMC-EnSpm 842-4189 [Oryza sativa]
MESREWMYHWPRFLSPYRNEVSKFIGIAKAHAEKNNMRKIICPCADCKNEIAWDFDDAFKVKEHLVTRGFMDKYEIWTRH
GEEQVDGPENVVPTQVEDMVHDDGSVEDKIDLEEMLRHAEPEVLMGSARGLNNFEALQKAAKEVLYDESKGCDSEFTTLR
SVLELMRLKARHGWSDTSFDSLLELLQKMLPRPNSLPSSTYQAKKLICPLSLGVEKIHACVNHCILYRKEYASLDECPTC
GASRYKSNSNTGLEPSETTEGRQRKIPQLVMWYLPVKDRIKRIYSNPRDAELMRWHEEGRKKDGMIRHPADARQWINFDA
QYREFAKDPRNIRFALSTDGVNPFGDMSSSHSTWPVLLTMYNLPTWLCQKRKYVLLCILIQGPRQPGIDIDVFLEPLLED
MADLWKEGLKVWDEYLREYFTVKAIIFVTINDYPAMFSVSGQIKGKTGCVICLNGTYYRYLPGSNKLVYMRHRRFLRTNH
KYRKMKAEFDGTEETDPAPKPTSGEKVCAMTEKIVCEFGKMTKKPSKGTKRKKPEKNTKQGDSKKQDDSSKPDDKLPPPF
KKHSIFFKYLPYWKDLEVRHAIDVMHLEKNVFDNIVGTLLDMPKKTKDGLQSRMDLVEMGIREELHPQEGEKNGKVYLPP
ACFTLTPEEKKSFCNSLRDVRVPIGFSSNISRLVSMKDLSVSGYNSHDCHVLLTVFLAIAIRAIKPEHLKVAITRLCYFF
NAVSQKVISLEELGNLRTFAHETQCQLEMCFPPSFFDMMEHLIVHIVPQMVALGPLYLHQMWSYERYMAVLKGYVRNRAH
PEGSMVEGYSTEEVVECCIDYLKDGYAIGVPVPRHEGRLSGRGTIGKKRFVTHDHKSFQEAHFSVLHQFAIVEPYIDQHI
ELIRANNKGRTTEWIMKEHKRLFIDWLRDLDLPEGQTTDEITMKRLACGPSTTVNSWQGYDINGYSFSTRARDNKTCTQN
SGVRVEAIDEAGEKQSYFGFIEEIWEIDYGHTMQFPIFKCQWVKYPNGVNVDKFGLTVVDLASVGHKDDPWVLANRVAQV
FYVKDPSNLKKDIVLPGKQKILGVDGVEDVEDYNQYDSMPLYSQFVQKIKNVETSTQKTVKPYMRTDGVGKNVKG
>EnSpm-39_SBi#DNA/CMC-EnSpm 1504-4035 [Sorghum bicolor]
MDRSWIFGAPFTPTYVKGVEEFMKFVSERYSKDSQILCPCTRCLNQKLWSQPDVSDHLHIYGMSATYTRWIEHGESADVE
VVENLDQQEVEGRDYDFGINVDMADDDYDEDHGVPEMIGELYSFAEAQGEQPRFARVLEDAKKSLSPGSRHSKFSFLVRM
LYIKSRYRIGNGAFSVIMKLLSEGYPQSDLPKSYDEAKKYLKELGLGFQNIDVCENNCVLFRKEYEKEDVCPVCKASRWK
DGTGAKRIPHKVLRYFPLLPRLQRIFASKRTSKETQWHKNMRKPVDNVMSHPADGEAWKHFDRRYPTFASDPRNLRLALA
TDGFNPFGNMSTQYSMWPVLLTPLNLPPWECVNPANCFMCLLIPGPKSPGKDFDLFLQPLIEDLLELWKGVSTFDACTGR
KFDLRAAVLWCIHDFPALSTLSGRTTKGYYACIYCDKDPLSRAIRNKLCYIGHRRFLPKEHKWRKSLAFDGKHEKKDQPG
KFTSEEVIEELEKVKDVRPGKHPEITGNKRKRNEGPKIYSRKVGLWRLPYWKHLLLPHNLDVMHIEKNICENILGTLLNV
PGKSKDTTNARLDLYDMKIRPELHLQQRGNSVVAPHAPYVLGKEQKKEFCKFLRGIKFPDGYAANLARYISEDGSKVTGK
LKTHSCHILLQRIIPAGLRGLVRKDVYQAIAELGNFFRELCSRNLRIDVVKRLKQDIPLILCKLERIFPPAFFDVMVHLA
VHLPDEALLRGPVQYGWMYPIERRLGTLKNFVSNMGRPEGSIANAYMASDTLTFCSRYMDDIDTRFNNDDDNDGDRPLPD
DVSVFKHGVTLVGSDRRQYIDDAILNKLVWYVLNNCDEVDEYKE
>EnSpm-14_HM#DNA/CMC-EnSpm 287-2305 [Hydra magnipapillata]
MSRKEYMKNWRKKDNLLRKFLYESDKDEDFLEKKFEKQKPCHIEDSSTPNSSLNCTTICSNHLNQLESSSQLDSSIQHYS
SCELYSSSQLDSFSEFDSSSSSEENVVETDVSNSVLDSKETYFILNLKKWFIKNRITHTASNELLSLLRCSGHSALPKSS
RTLLKTQRCVLIEKKCGGEYIYLGLRNGISRTFRENPLFPIENNIISLLVNIDGVPLHKSSNSQLWPILCQFSKFTPFIV
AIFYGSQKPTNLKDFLYDFLIEFANLRACGYDKDGVNLLVEIRAFICDAPARQYLKCVKGHTGYYSCERCEIKGKSELFR
MILDNTNCVPRTNELFKQYLYKNTHQISRSILIDFNVNCVDSFVLDYMHLVCLGVVKRILIFLTNGPLPYRLSSAQLLNI
SENLLKFSGKFPSEFARQSRSLYEVKRWKATEFRQFLLHTGFLVLKDAFTPERYQHFLSLTLAMRIFLDSNAIVRNNHLQ
YAKELLNYFVVKSKEFYGATFSVYNVHSLSHLHEDVSFFNCSLDEISSFQFENYLQVIKKFIRKPQRPLSQVLKRFSEIE
NLEINCNQPAKSHRVIISTKYKDSWFLLYTGEFAQIIEKLGDDQFNCVVLKNCLYKSVFTDPCDSKIFNIVFVRNIKTHL
KPTRLSKKHFQRKAVCLAYKEGFVLSCLCHDI
>EnSpm-5_NVe#DNA/CMC-EnSpm 1062-5226 via genewise with EnSpm-18_HMa, 2 introns (1796:1927, 2430:2601) [Nematostella vectensis]
MAGVFLCPQTCGFGKVIALQVAREVEKALPRESGESTTKYNARVKGEQYRKYRSYFPPQVTGDAFDIEFLKFHRKLPGLR
NAMNKWNTRKAEEKSKFMETFSREKWQGLSENRRKEHSFQNCKACAIRYTEVMSYFPVTSNFFKGKAKQNIIFAANNEAE
RLRNATPTVKARKRDATNVARALFEQYEESFQEQYQCSLASALSSVPGINLQHKTENDKRNERRRIYTSSKENVENQMKE
TAFLRCYGSGQSIRGWERGRRALSFEPANTARERMDEPNKKKRKKDHTGDMERMGWDKAGLKAEVEAYQGGHLINYSALA
RKYNVTDSSGQVALNGGQIVKEWLVRNGVDVDRFSTKRKNPMDPVIRRRKRRGQGGEISIPCEPDKKTLKAQLLQKIHTK
EYSIGERIVPRKYEKLILTKDLKIKKEDVYTDGRKMPLANIRRTMLKKQEKFLRGTTEEGIAELTAEQLRTRLLQINEYV
DGMAVPDMREKLKSHERTRHLMVWLDNSTVANSGYLVCLMTCLYDKAVFLTDEEYAAKYGRRVNVQMLVEEPELHFIAKC
GSSDHELLLYSETRLQCVRELCDDNSISYTDIMRFCQGDSPLRAFETGQQKGGNYFCSTCEVHCDMTSDLAYTLNLEAIS
LTERQQAILRGTVSLSKSKQKKAKPLEGLKKEELEKELASRGIYEGKTKMEMQKLLTEEMKGKQRVPALLFNTPTESLTN
LNLESYEVIPCEPLHDLGNHIANFFAEFPSHLMGEEKALIEETITLSLAGKDSKRCVDQREALIKTAGVAHQSNIMSKKA
MAAIDTLVEMQRLLYAADSQRSPASILRYSNQAWYHAILLIDFVKDTKKLTSRKLYGVYFHNLTAHATSTLRLMSGQAAN
AERQERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIGLQRDDVFRQQDHVSKLATCLPSPKNTVIPEELIQRHSHA
WQAHLQEISDFLVEGEGVWWKKVEDGVEFHDVTDIPSGCGPSLHHFRSSNLKKEAERLDNCWKHCIASSIPLPTHLLRID
QEDGTTLRIRIDPESVPADTRNASDETSEEDENAVSITLAPDEVVCHNAGFPLPEEVPPVPLIATADIMDATESEDENVV
GITLARDEVVCIDPDLPPPEEKHANEGNSTTSLPTSLTPEPATRTTDSSTGLTSRLGKALEIVVGKTTEVSALDKKHARL
KQLQRQNLRDQHLENSYHHSLAQMQTKVLAKRKNIQSDLVAWEKQFLFDHNLTAPTPQFMNEDSTASALLKQLKYASALL
KQWGITL
>EnSpm-4_DR_p1#DNA/CMC-EnSpm 5979-8417 (may have more exons) [Danio rerio]
MLKCYICRTLHDAPSSLIQHLKFFHGLYPGKKFVLVCAQEGCSRQFKSFKGFKMHLNTCHYTTDLDASSDVMQVPHQSDF
GEQSSQHNSSVMDQDAINEPSTSLMSKDQAKDMCASIIAKLKGSGVANSVVLSVVESMEEYVDEIHANLEEQVLSALPAE
NQIRSAVKDVFSNAFNPFSDLNTNSKMTKYFSEKWGVVEPIEIHLGVRFDSKRNKKSGVYEQVPVNDTFIYVPLLKTLEF
IFKNPEVCSHINKPPATDCNLYQDFCDGKYYKHHTLYSMSQNALQIQVYYDDFETANPLGSKHGVHKLGCLYFTVRNLPP
RLNSSLMNIHLISLFHSQDSKKYGIDKILCPFVEDVKVLEQHGMKVSFTEQPLYGTIAQVTGDNLGLNSILGYVESFSGN
YFCRMCLADKGLAQTMFSENDPRMVLRSRLTNEEHYNYLCENPRETSCFGLKRNSIFNSLSYFSVSDNFVLDIMHDVLEG
VAQYEIKLLFGYLNQNFISNENILQRVYAFNYGFMDKKNRPTRINLSSSGNSIGLNASQTLCLSRNLPLIFGDVVPEGDR
HWHLLLLLIHIVNIIFSPSITDGMIVFLKHLIREHHQLFSELYPQNNLIPKHHFMIHYPECIRQIGPLVHVWSMRYEAKH
KFFKSSLKNFKNITKSLAMKHQIAVAYHWESLFTKGIESGPVKSKKLTDVDNGHLIAEHFRIDMLSEVNITSWIKHEDVE
FHTGLVVCTGVVEELPVFNKIVCIFLRNEAYFLVTEMETSFVEHLHAFEVTENMHNVSVVMPHDLRFFKPFDVQMAYGAD
SLFYVVPDCCIV
>EnSpm-6_ZM_p1#DNA/CMC-EnSpm 1543-5049 (may have more exons) EnSpm11_SB_p1 over 90% similar. [Zea mays]
MMERISWMYNLSRLDPSYISEVHKFIVVAKNHAWRTKTKHIYCPCMDCKNAVVFDDTEQIISHLVCRGFVKDYIIWTKHG
EGSSSPYTAGNPANIDDSFQFVHETQQPLPQSEHVVPNVTDHGYAGGNERERTHVLPNVMDEEDAELLEAMLRRHTDPSM
FFMKGMESLKKAAEEPLYDESKGCTKEFTTLRSVLKLLMLKARYGLSDAGFDAFLSIVADMLPKENKVPANTYYAKKLIS
PLTMGVEKIHACRNHCILYRGDDYKDLESCPKCGASRYKTNKDYREEECVASVSKGKKRKKAKKKTSKSTSKEKEEVDYY
ALKKIPALVMWYLPVVDRLRCLFANPEDAKLMSWHASNEHKNDGKLRHPADGKQWQDFNENHRDFADEPRNVRFALSTDG
MNPFAERSSKHSTWPVILTIYNLPSWLMQKRKYILLTMLISGPTQPGVDMDVFLEPLMEDMKILWVTGVQMLDEYRKDSF
TLRAIIFVTINDYPALFTLSGQFKGKVGCTVCIDETAYVSLTASKKIVYMRHRRFLLEGHRYRMRKMDKYFDNNGELHST
APSGNNKGHRVFEIVKNIKFVFGKKTKDGKTRKDVKPAPGAIFKKKSIFFEYLPYWKELDVRHAIDGMHVQKNVFESIIG
TLLDIKGKTKEGLNSRMDLVNLGIKKELHPVLQENGKYHLPAASYNLNVDEKHAMCVWLKNLKVPSGFCSSIRSIVSMKD
LIVTNYNSHDCHVMLTTFLPIAIRAINPLFLKMAITRLCYFFNRISQKVIDRDELASLQEFAVETITQFEMCFPPSFFDI
MVHLVVHLVPQIEALGPMYLHEMWTYERFMSILNGYVSTRARPEASMIEGYCTEEAIESGGPFCNNILKDQVAIGLPPSR
HEGRLYGSGRMGRKSFIPPDYNTVLEAHHSILHQLAIIEPFIQQHINELHEQNPGHTADWVMKQHKQRFNTWLMVKDIPR
GETIEEKTIKGLASGPSRQVTTWQTYDISGFTFCTKSKDKKSMSQNSGVRCEAIDDETGEIITYFGFIEDIWELDYGTFQ
ISVFRCQWVEDKHVTVDNYGVRVLDLSKVGYKDDPWILANRAAQVFYAEQIISNNEKKSTDKPKHVVFPGKQQAIGVDGV
SDLEDFNQFNDMSLFIDHPTKIRNVERSIPRNSMPWVRHDGQGRTIAP
>EnSpm-10_ZM_p1#DNA/CMC-EnSpm 1980-4649 (may have more exons) EnSpm-14_SBi very similar. [Zea mays]
MEDREWMYTGRRGRNDVTTEWIRKTDDFVERAYGEAAKGASLVPCPCSKCANRKRKPKKAMVEHIWKNGFTPGYTRWIFH
GEAHRTREEVLRQRVEDYDADAGVADMLNDYQEAQYTGGCMDDEPEPTAKAFYDMFDAAQKPLHGQTKVSQLDAIGRVMA
FKSQYSMSRDAFDGLLTVIGSLLPDDHVLPKSMYEAQKLLRALKMTYEQIHACPKGCVLFRKEYAEAKYCPKCKSSRFME
VDSGDGQKRQLDIPLTILRHLPFIPRIQRLYMTEESAKQMTWHKNGKRYNPDKMVHASDGEAWKHFDAIHREKAEEARNV
RVALATDGFNPYGMSAAPYTCWPVFVIPINLPPGVCFQRQNIFVSLIIPGHPGNKMGVYMEPLIDELVRAWEEGVWTYDR
ATKTNFRMHVWYQYSMHDLPAYGLFCAWCVHGKFPCPVCKEALRFIWLKKGGKYSSFDKHRQFLPPDHPFRLDIKNFTKG
VVVTDRPPATMTGAEIRQQIDGLVANTEGGFVGYGEQHMWTHKSGLTRLPYYDDLLLPHNIDVMHTEKNVAEALWATIMD
IPDKSKDNVKARVDLAALCDRPNQEMKPPSGGKTWRRPKADFVLSRAQRKEVLQWIKMLMFPDGYAANLSRGVNLSTMRV
LGMKSHDFHIWIERILPAMVRGYVPEHVWLALSELSYFFRQLCAKELSRTVVADLERLAPVLLCKLEKIFPPGFFNPMQH
LILHLPYEARMGGPVQGRWCYPIERCLKTIRKKCRNKCKIEASIAEAYILEEVSNFTTTYYGDKLPSVHNPPPRYNDGDN
ESNLSIFRGQLGSASGSTTKTLTHEEWRHIMLYVLTNLEEVTPYMEQFLHEFWRRSRDPTPQEYDTLLRKGARNGLPDFI
SWFKRKVRA
>EnSpm-8N_VV_p1#DNA/CMC-EnSpm 1-2208 (may have more exons) [Vitis vinifera]
MNMQLVLKHFFKLQKLMWIKMESPCKHCQNAFWKSIYDIETHLYKYGIATTYQRWIFHGEKVCVDYNERKDMSGPNRLDH
HETFTVNDDVDDDDEMIELLSDVCGPIPNRDATSETTNVETKHFDELLGEAGKKLFTGSKLSSLTFIVKLMHLKVLNHWS
NKSFDMLLELSSETFPEGTNLPSCTYDAKKMLRDLGLGREKIHACKFDCALFWKENEFLDKCPICDEDRYKINDGKGKKS
IPHKTLRFFPLKPRLQRLFMSRHTASDMRWHKEKRVDDGVLRHPADAEAWKLFDRMYPSFSSESQNVRLGLSSDGFNPFG
NMSHSYRMWPVILVPYNLPPWKCMKEPFLMMSLLIPGPHSPGKEIDLYLRPLIDELKELWHDGIETYDVSIGQHFKMHAA
ILWTINDFPAYGMLSGWSTKGYMACPVCNVDTSSQSLRSKICYMGHRRYMPTNHPWHKSRLHDGKLEMNPAPQSFSGDDI
LEQLENVDHVILGKNPNKKDKKRKRIPSELNWTKRSIFFELEYWSKLSIRHILDVMHIEKNVCDNVMGTLLNIEGKTKDT
YKARLDLQDMNIRKELHLVLHGNKYLKPHACYTLTSMERREFCAFLKSIKFPDGYAANISKRVNIEDGKILGLKSHDCHV
LLQRLLPIGIRKFLRKDISTTLTELSCFFQKLCAKSLRIQDLEILEHDIVLILCKLERIFPLAFFDIMVHLLVHLPHEAK
LAGPVGLRWMYPIER
>YM3_STRCO/76-175 transposon family T9 Pfam:PF01548
LRTGSRKVFAINPLAAARYRDRHGVSRKKSDPGDALVLANILRTDMHAHRPLPADSELAQAITVLARAQQDAVWNRQQVA
NQVRSLLREYYPAALHAFQS
>Q51474_ALTAT/71-167 transposon family T9 Pfam:PF01548
CANANLPFVVANPIHIKRFAGAIGQRAKTDKLDAQLIAHYGEAIQPKLSQLKPDTMQAMSDLVARRNQLLVMQTMEKNRL
QILPKELAMTIKPILTA
>Q27397_CAEEL/9-229 transposon family Tc5 Pfam:PF03221
IGELMKTFGTNTNALPMSREETKTVEKFTRILKDAETDDLLIQSDDEEEVFGGIVDEEDWKPDDDDPSACVVPDKVNFSS
GAAIDVAMVHSAVEFMTDVRTKKLRSFASMQRRYRFIKTQHDMQKLRVFAKNNEIQCSRVSQFSTLSGLLRTKVFEAIDD
RISIDKFTLRRLAVQLNDEHVHIEGFQASDGWLKKWKKTNGLVSRHVTTFITRANYVNKEL
>Pr74280 (piggyBac) piggyBAc transposase jgi|Phyra1_1|74280|fgenesh1_pg.C_scaffold_7000051
MDGTLVQTAHSRICGLACMRSSRREKPAAPAAAPHDVDFGHLWRQLRAAGWTCKRPTGIQTEWTYKSPEGENVLVGERAV
VEYAFESGLLVEDEEHVGEEGGNGEHVGDEVGGGERVGKEGSGGGGEHVGEEGGGGEHGEEHVGGEGGDGEHSEEQRDAA
ASLRLLSDASGLESEGEDERAVTSPIAPTRRTRIPLKLDADVNVLQTGESSSEYEDFSSDESDSAGICDDDGDCGSDEFD
EEGGDEISDSDAAEMDEAFLASLHIGGNVELSKAALKQRAEALRAMQWTPAMTELETGTPAYPGLGADEARPVGDLLDVW
RSPLLTLFFFVPKTVWVSIAKETNRYFLQQVAKRAERMAALQTGRQRETAAQIERRLRAPEEYGAHEILRVVGLLVARML
CPQKRSFAAHWSMVEDGAIPAGLFGRYMSRDRCQNILRDLHFVDNTADHGRDKLWKLRPVVDKIQERFLAGWSLPAIFSF
DEGVLPATSKRNTTRMFMSDKPHRYGSKLFMLCGAKTAYCHRFEVYVGKRNNDGGDTGIDAKTGAAAVLRNLKTAFIPQS
RHNWHAVIIDRYYTSVLLAVELLKMKVYVVGTIMTNRLGFDKSIKSEHKTRPASIPRGSFVFTRSVSIPAMISCLWWDRK
PVYYLCTGSAMTPATLERKVKRVGSIQVGCPQSVKDYQNWMGGVDRHDQLRLQSFSLQMSTRFTKYYKGLFLGFLDLALV
NAFLTHMEAAKIKGTVSMKRSEWFTVLQNQLLQLKAEDFAGVEVTPPPSRQKRRRTPFRLAHALEQSEDWVTVTGVQKRR
QRSCKVCALLRTEKKTSFATTFFCERCSIDNAKCWLCNKIRRDYKGIAKTCFEIWHDDFGAGQDIPAGLGKRVVLRRPGK
NAGKRKKTRRELQLVRDEGSDGGDSDSDSNGE
>gi|55742116|ref|NP_001007117.1| helentron 2 helitron-like transposon replicase/helicase/endonuclease [Danio rerio]
MQLIAERRFRQNHLSMEEVPSKLTTFNQTYNVHKSEVKLGFLRARSAPDMENWFLPLAKRLQCLTADVTHALLIVSRQCI
AVFRDGSGRYGFFDPHSRTAKGLPDCTGCGTAVMLTFPLLSDMTDQILQLFGKCPDNENYEFMPVSFETEQQAGQQPLLS
TCAQFSQVISVLPEPEENIDVQNGIAQENKAMMSKKNKSRRRREMRKTTEKFKSRKSKNTTASYAMKKHKQRDNERDRYA
ACLQFRTNKKEAVREKYSQDAHFRNKKKDCSNRRYKDEIVLSKKKEYMARRYTTDPVVQSKKKEYMAKRYTTDPVVKSKK
KEYMTRRYSYDTIFQAKKRAHMVSRYSTDTAFQKKMKEYMMRRYGNDSEFRAHHILQCTLHKKQKLPNNTTRIHQLQCAL
RIKRKYKMCIRSSLETPQPLVSKVMESAIHAFRSKIQQGPTYVCTVCHRVLFPDQVKACDGSNYEKDVQLSSFCLTRKYV
HTCDSVCSDDCTVPEERRREWICHTCDSHLKRGRMPSIAAVNKLELPPIPAELAELNVLERQLIAKILPFAKIVALPKGQ
QRAVHGAVVCVPSEVENTVNSLPRPRSESQLLQVKLKRHVSFKGYQHFHTVNMHSVLAALSKLKEVHSEYKDISIQEPEV
SEDQFDEDIDAAEDNQEVGTAEHEEQHVSVEEKDELRPGLTLDTCMQPPDIAHDILSYGEGIFSIAPAQGKKPVGFFKIP
KLEAMAFPVQFPTGENTIDEARQTAVSPSMYFNVRLFCVDARFARDQSYLFFAQFVTETQLARNSMSIQLRKGKPITKDG
RRISNRMLQDSDEVERLVHNRDATRFMQPLRGSPAYWEKTLRDLQAMIRQLGTPTFFCTFSAAEMRWPEIVTVIKAQQGE
EIDFSQLDWATKCEILRSNPVTVMRMFEKRVDALMAHLLLSPAQPIGEVEDFFYRVEFQARGSPHIHLLAWVKDAPDPEE
DNDETICDFIDRYVSCKLPDPNVDPELHKIVTEVQLHSKNHSKSCKKGKVVCRFGFPKLPMPKTMITHPMPERPDEGDDE
PTDSAAKKKARRDEAKKAMNEAKSKLKPLWDLLNDPKSSFNNLSDLLTKCNLSMDDYLNYAEGLTTGSAVLLKRDPKETW
VNGYNPDLLRAWNANMDIQYILDAYSCIMYMLSYVSKPEHEMSGFLKNVIQSVREANVNEEDEMKHIMQAYAKHRQVSAQ
ESVARTCSLPLKKCSRSVVFVPTDDDALKMSLPISVLLNKNPESEDVWMSGLIEKYRARPLTLEFEKMCLADFASNYRVV
YGQQIKGKNVLRLLHDMGFIQKRTIGKPAVIRYARFSEEKQPEKFYGRMVKLYVPHRHNEELKPEDFPTYQLFYKSGFVE
LPGHPGLRFPVCGIVKAYQQRYEKHGKVVDKAFEQLQQEGPSESAWTAFAPEVEVDRLECIAEQEDVGPEEDDEQDEVPE
FQPRNEDGDGVAPRIVAPQMSVEFVRKLFRSLNKTQAAIFYTIRRWCQNRVWGLNPEQFFYFVSGGAGCGKSHVIKCVYT
EATKILQQLPQLREDGDLSIPTVILSAFTGTAAFNISGKTLHSILKLPRNLKPPYQGLGNSLDDVRAGLRHVEILIIDEI
SMISKDFFAYINWRFQQIRGSKKPFGGISVIVVGDFYQLPPPGKAKPLCVYEEDVLDFWKDHFQIVTLTEIMRQKEDLAF
AQLLNRLRVKRKSDALKEEDRALLLQAVRNPQDCPRDALHIFATNKEVHSHNSNTVNALHADIITIHAEDYRKDPRTGGM
KRQTKPVMGNKDDLLDTIQVAVGVRIMMIRNLDVEDGLVNGCFGNIGNIVTKTRDGIAFVHMLGIQPDNPNAGQKYRRRL
QGDQDTLVYIERSEEPVKKRAVRRQFPIKLAYACTAHKVQGMTMQSAVVSLKRIFEPGMAYVALSRTTSLGGLYIRDFDE
KKIYADPEITTSLERMKTATLEGIMPLFDWKKTNTSLVEKLIVVHHNTEGLQSHIEDIKHHHELLLCDIFCVTETHLSGS
CISSHVQLEGFKMFARNRHASYSTLPEMAKKDCGGVAIYCKEDIQAEPRHFIHHVTDLEFVVIKVDAPVTATIAAVYRPP
DYSLEKFLPNIRGLLDYLEMMKENPIIVCGDFNEDHLSSGRKPILELFQSQQYQQLITNATTEKQTLLDHIYVSHPDLCM
QSGVLHTYYSYHNPVYCVLPK
>O52518_9RHIZ/32-124 transposon family T8 Pfam:PF01527
SNGKRRFDPADKARLIDSAMKPGVSVASLALAHGINANLLRNWVKLRRDRQMQDDMPALAGHEASAFVAVATASPIVHLP
DMPARPPSAGMRL
>Q46611_YEREN/1-79 transposon family T8 Pfam:PF01527
MKKRFSDQQIISILREAEAGVSARELCRKHAISDATFYTWRKKYGGMEVPEVKRLKSLEEENARLKKLLAEAMLDKEAL
>O31217_DESVU/1-80 transposon family T8 Pfam:PF01527
MKKSRFSESQIIRILKEADGGRKVVDICRENGVSQATYYQWKAKFGGMEASDIRRLKELEEENSKLKRMFANLSLENEAL
>Q44423_9RHIZ/14-104 transposon family T8 Pfam:PF01527
DVSRRRWTTEQKLTIIEQSFEPGETVSSTARRHGVAPNLLYRWRRLLSEGGAAAVDSDEPVVGNSEVKKLEDRVRELERM
LGRKTMEVEIL
>Y4RG_RHISN/31-110 transposon family T8 Pfam:PF01527
RRKPRHWSDEEKAQLVAEALSPGANVSAIARSQGLDPSQLYAWRRKALSSGMVAPLTEGAPAPVKFTRFEAVGSSMVEIV
>O88165_9RHIZ/16-113 transposon family T8 Pfam:PF01527
RRGNRRWPDDVKARIVAESLEPGVRVVDVARRHDVVPHQLSFWRRQAREGILALPFEAMLGLSESGDAEPAFVPLAIAAE
PSEALNVLAPPKLREAVS
>Pr86119 (piggyBac) piggyBac transposase jgi|Phyra1_1|86119|fgenesh1_pg.C_scaffold_471000001
MARIRSSQRRKSATAAAVARDLDFPHFWRQLRAAGWTYKKPTGLATEGRYATPDGNGVFVGETAVVAYALEYGLMDEVGD
VAGQAAGAEAARTTAPTAATSTAADVGTAAETGSAVATASVASTETVVNTGTVGDTGMADTDTAGPATDVGAARAVMNTG
AVRAVVDTGAARPVVVDTRASSPVVGASQIDTTVGLSQGTLDHLFGSPNDSEDELSQAAVPHALGLSPHQFEADTSQREA
AMNLHQLSEASGLESGADDDQERQRPATPPRTLRPRVVKKDVNFIPEDEDEKEYESMESGNESDGEGSRDYDFEEEPARD
VVSDEDVLSEADAERMDEAFIRSLMIGNTSVTSQEKKQREDALRATQWTPVVSSDFEVDTPEYPGLGEHMALPVAELRAV
ASSPLQTFLYFMPKSLWVMIADETNRYSLQQLDQRAKGIQTKQHRRRRESLKQIRRRLKLKHEYKPHEILNVIGLLVARM
LCPQKRRFSDHWSMVEDGAIPAGNFGRFMGRNRCQDILRDLHFVDNEAPRTRDKLWKLRPIIDKLQQRFLEGWSLPAVIS
FDEGVLPSTSRRNTTRMFMPDKPHRYGSKMFMTCDSRTSYCHRFELYAGKRQAGTAGDAAFDHKTGAAAVVRNLKVLFAA
KARYQWHTVVVDRYYSSVLLAIELLSMGVYVIGTIMTNRLGYDQRIVDKRQSRPSGIPRGTFTFSRSVAVPAMVAFHWWD
RKPVHYLCTGSAMRESSVGRNIKCVGQISVPCPSAVSDYQRWMGGVDVHDQLRLQRFSLQTSTKFKKYYRSLFLGFVDMA
LVNSFLTHKETARIEGTPCLKRGEWLGQLQNQLLQLKAHDFVGVVATPTVDTQRRTRTRTRHTHAPEQSDDWVTVSGVQK
RRQRSCRVCALLRSSTSKKSFQTTWFCERCSVDDAKCWLCNKIRHEYRGVMKTCYEIWHEDFDAGEAIPTHLGKRVVLRR
PAQKAGARKKTRRELQLRARDESKSGNGEESEDE
>Chapaev-16_HM#DNA/CMC-Chapaev 514-2580 via genewise with Chapaev-1_HM, 1 intron (1097:1199) [Hydra magnipapillata]
MPNFSKNHEDCRKSVCVLCLKKCSRELTQFLVEKILKHYHTSLDLTDTRVPRGICDSCRTILRRKDEGKDVNLPPLFPFS
SIKVRPPTRDQGCDCLICQVGHLKLNEKSPVDYSKPVEDCTPQRCGDCLSLVGRGLPHQCTPFTFRENLKQLATADPLAA
EQIATQVISTKPSTPGGTVKISHPKGGPPLRVKTGSSSARALFPEPSIKTEDLVQVQLNTGLSNxGMKKLASTINRVSDT
KIVETSFLAKFEAIGKQLSEFFTQTSIQVLSESNSTDFVVVHCKDLAELLNEVLLSRRVFQNHIVKLGIDGGGGFLKVSL
GIMELDSHCDSRSPPRKKLLTQRTAKDSSVKRQMLVALSEGLPENFENVKQILSLIKLDKVNFVVSCDMKLANILCGLQS
HASTHPCSWCDAESKHLSQSGSLRTLGSLVARYQEFAKSGGDIKKAKSFGNVVHEPLLSGSENKLILELIPPMELHLLLG
VVNHMYKAMTEVWPNVVKWPSALHIQQEPYHGGQFAGNACHKLLSNLDLLQRIAETESAFQVFGIIDALRKFKSVVTACF
GMVLEDDFSEKIDRFRDSYLAIMNISVTPKVHAVFFHVKQFIEIKRAPLGIFSEQATESMHHNFSSHWQRYKRDRNHPEY
AKRLLSCVVDYNSKHL
>Chapaev-1_ACa#DNA/CMC-Chapaev 727-3543 [Aplysia californica]
MEHTHEIHSSSLNELCRICGCKNVTKVQQRQKRKARTCDSLQSDILLIYEIDIREDTDDKYSKFICHKCHMRIYDTKKNT
TPSTLKKARDLVRNSQHIWCTFENQTTIKDCSVCRHRVNLSDGCLKPAKEPAATVAGDSPSTSPSLHSQHSPVTPSQTTS
TYDDPTTRPSSSNTPHSSHINTVFPSQTQSAEQNEITCISIPLATSTPLRPSKPELKDIGTSPMCLQTDKVHQDSTTSPL
FKTLDESDTLAHSLSQPLDAPLSKREDDVSTHLFKRKLFTTKNPQNVVTFKTGGQPIAVKRLIIPRKDSSEAASPTKRRR
SRLLEGTRANVAGPSMSAEDIQFASELKKMPGKRRQGVFNKAGAQSRIRLTPQQTLIMKETAGFSGRQGRYYGKALKQVG
VHLANEHSVRKLSKEVVSDSVEVEHRMFLDNQGKEQGVPYGRIKNLSSFVDSLLDEYVENDLLVWPDTIPQEEVWIKIGG
DHGKNSFKMTLQTVNTYKPNAKQNTIVIATAAVKDTHENIVRFLAGGLGDDIASLSAHTWRGKRLKIFVNGDYDFMCKMY
GLSGPQGTHPCLWCLIPKAKHYVFPETYQQRDLHMLHTDHAAFMAQHGGDKKGAAQHHNCLHAPLLTTELDHVTPPYLHI
LLGIVLKHHKLLEIEADKLDRTIASMTPKTLTKLGLTLMKYGQNYKTAQEIQEKIRFTRTCAAMSDTQEEKGTFRTETRR
LRHTLSELDRVELSPRSGPVASSLDTILTKHRITPQAYHSRSFIGNHCHKYLNPKVYRHLTQTIVEQTQMYTYDPIIVDK
AHTIGLIFDSLNKAYSQIHDDISHSIPIPKTSIPAIQTAIDTYMKLYRRHFPKKTIPKQHILEQHCIPFITQHGFGLGLL
GEQGTESCHQSISKIEKRAQGIVDNTEKLRYVLNAHLLQTAPSLRIEAAGTEKATTAP
>Chapaev-18_HM#DNA/CMC-Chapaev 450-2658 via genewise with Chapaev-13_HM, 1 intron (1057:1265) [Hydra magnipapillata]
MPTFAKNHEECRKSVCVICMKKGDQELTENFKAKILQQIQKEINFNDDRVPLATCISCRSHIGKLCDGKTNVVPQIYDFE
SISIKPLTRFSTVCECLICKIAKLKGKERHPLSKVQDSAPKVPQQSSQNAEKHCTKCLSVIGRGLPHYCTPGTRHENLRR
MAASDPIGAEQVAATVLASKSASPHGTIRLSQPCGKLLPLRKGPSSAQQLFKEPLTTQNMVQIQQNIGLSNNGMRKLGSA
LNQISPIRLVEPSFQQKFAQAGQKLCDHFTVSSVTLAENNQISQVVHCQNLSSLSDVFLASRKMTDSAILKLGIDGGGSF
LKVSFTHIIVDEGETPPHSPLQKTIKLMSPQTTKSTSVKQQLLVAIAQNTPENYHNVKAIFDLIQVQEKCQMDSLVISCD
LKLANILCGIQSHSSKHPCCWCDVSSLNLQNCGSPRTFGEIRRQHFEFINAGGDTRKSKEFENVVHVPLVDFPDHKLVLE
AIPPMELHLLLGVVNHLYKNLCKIWPGAEKWPASLHIPIQPYHGGHFNGNDCMKLLRGLDKLQLVTGYNNFSQAHDFMQT
LALFKDVVISCFGNNLDPDYESKISKFKQSYIRLPISVTPKVHAVFYHVPQFIKIKKTGLGLFSEQATEALHSNFKVHWE
RYKRDSSHPDYASQLLKCVIEYNSKKI
>Chapaev3-3_AA#DNA/CMC-Chapaev-3 877-2613 One stopcodon, probably in an unspliced intron (poor donor site) [Aedes aegypti]
MARKCRNDPDSFCFICGQFITVKQKRKLTSFIKLCYELYFKRKLIHQDKEWVPHVCCSTCARLLSAWFKGMIFSLLxMLV
LYLCIENNKHISTCLGARHMHFAVPMIWREPTNHAKDCYFCLVTVQGISTKNKKMICYPNVRSVDQPTPHSNDLPIPVPP
NFQGEEMDGVEKISDILTECSSVATYSSNVDVRSMSQADLNDLVRDLNLSKKQSELLASRLKERNFLERDVQITFYRQRQ
KEFENFFCEENGLLFCQNVDGVMDTLGHSHVPSEWRLFIDASKSSLKAALLHNGNQYPTIPVAYSVTMKETYSNLKQVLN
KIHYDDHCWPICGDLKIIALLLGMQLGFTKHSCFLCEWDSRDRKKHYVKKIWPKRQDFTPGNKNVIHSPLVDPLLVLLPP
LHIKLGLMKNFVKAMDQSSSGFDYIKTKFPEISEVKKKEGVFIGPQIAKLMKDQEFDKTLSKAELRAWYAFKTVCRDFLG
NRKAENYREKISELLKAYRSMGCNMSLKIHFLHSHLEFFPDNLGDVSDEHGERFHQDLKIFEKRYQGQNNTNMLADYLWT
LQAGSSEIHHRKSYRKTF
>Chapaev3-2_AA#DNA/CMC-Chapaev-3 1249-3049 (Two introns; one Genscan-predicted) [Aedes aegypti]
MCAAKREFKCKNDPQKFCFVCGNYIFTTPVNFTSSLQTAYRLYFKTDPKNLDKTWTPNVVCSSCKTCLARWMSGERxxLS
FVVPTIWRQPFCHAADCYFCLTKKVMQHGRHKAVEYPQVQSMTKPIPHEDSSPYPVCPKRKREPSVDDSDEPPFDESDVE
YERKPMLFTQAELNDLIRDLDLSKEKSELLASRLMERNFLSADTKVTSYRKRHEKFGKYFSKKDSACFCHDIRGLFEEFG
EPYDPSEWRLFIDSSKLSLKAVLLHQGNNKPSIPLVHAVNMKESYESMAFILDLICYNQHNWKICSDLKVVAMLTGLQQG
YTKFMCFLCKWDSRARKQHYVRENWPERKSFTIGQENVRCHPLVAKEQIILPPLHIKLGLFKNFVKALNKEGPAFGYLKS
IFPNLSDAKIKEGVFVGPQIKKMLNDEDFYTVLNNHEAEAWKSFQRVVAEYLGNTRSPDYEEIVADLLKNYKRMGVNMSL
KIHFLHSHLNFFPENLGDESDEHGERFHQQMKIMERRYQGFWDEAMMGDYCWFLFRETNCKHNRRSDSNNHF
>Academ-1_AMi_tp#DNA/Academ 464-5175 via tfasty with Academ-1_NV_tp, 1 frameshift and 1 stopcodon. [Crocodylidae]
MELIASLSPAKRGRYDSESTRCIICLEVGSQSTISQSTPAGIARINEALIQRRTVAEFDTCYGSILDRLSHCVDPALQHS
KSLNWHRSCYSSFTHKGHIERLLRKSRKVEDERETYQQHQVKNTPRTSSRSSTPAVHWRMCIFCQKHSNKKRLSQVLSFE
SANAIHKLAEKNEVLRCRIGVEDLIAAEARYHPECRREEQRKQQVSRSHSHVEIAQEDILLSPEARAWHQVIDELDAGFA
RKNVYSLKDILERYCDLVEDEGGERPLTTLKQMKQELQTYYKTAIQFQHQRNANLPLLVFRTVTTGKAVQAVVTLHINDE
EAVGLQFREEFSDTRNLYYAALKIKADLKVIAGMKGYSNLNEEQAQKCVPDSLYTLIRLILEDDNDDLDVESHAQDKNLD
RDVLNICQDLVYLQSRGKKLTPKHVGLGLLIHHATRSKKLVQSLHAAGCSIPYDTVRRIETTIAEKNLKEFWENGVVIPR
NLVPGHFVQFSSDNIDILEETLDGKQTFHATQIVAFQRGPSKPTEIEESTDVIGRKRTLKDVPPEFNKVIPAMMTRNKSL
KPPVHSTGSNTNEKLDNTAVQQMSAELPWILGRISADNQENVAVPGWTAFNQFLSDDTSPPSIVGFCPILPAPASEYDTI
WTVIMRCKTIAGRLGQQHAVITFDQALYCKANELVWARPEETEGVIIRLGGFHIIMVYLTAIGQHFAASGLEDCWTESGL
FSENTATNIMKGKLYNCAIRAHKITFEAIWHILINEFIVWLSSSSKGLDYDVVDQLSSSIAVAFRNDDCEAGRNAVKELL
VHLPTIVTLLQEFVEEHSHQGTFKYWMNYLEVVNTLLCFIRAEREGNWHEHLCAFEEMLPLIAVHDHTNYTRWGPVYLEC
MKDLANFAPTVYAEFVEGGFGVKTTNLPFVNISTDQAIEHVNKVCKIAGGIVNITRNESARQxWELNYNERGHLTEMVNQ
MFGINTTTSFNHNERQRTRLKRDYNDVKLLQEQFERFHLFKVSNDELLRISTGDVVPEDIALDILNARDKGREIVNTIIQ
KRLTADATESFYANIPKSKLKTFKDVKSTMGQRSKMKQMQNAKEIQQRLLAAVAAGRRFDVHSLLQHELSGYPPSLFKPD
KSLNVADKAALSWILIGDKAVTVLPDATSEKSAVIIDGMALVQRIGKPKTARTFGDLADSFVQQVFANYSNTCNRVDIVF
DRYISPSIKAGTRILRTQTTRPIRRIISSRSLPLLASWSSFISLPANKENLVNFLSEELLKESRRCFRSERVLIVGGFAD
GKAEHSGSCDVSQLHSQQEEADTRMLLHGKHAVSQGYSSLVFSCDDTDILVLLLWHNLAPKVWMKRSNPVRFIPVHDIVS
ELPEPVHASLIGFHSVTGCDTTSRFSGHAKKTAWKVFIQHPHLLAGLGSRPDVDKDLYSCVEKFVVLLYQPSTSLTTLLD
VRVKLFHQGKALDKLPPTYDSLVHHVRRANYQSLIWRSALEPNPPLPSPDQCGWQAENDGYVPIINTLEPLPAEYLRITS
CKCKTECRGPACSCKQVNVPCTPGCECYETACCNPYNNYRDSETDSSDEEI
>gi|15793648|ref|NP_283470.1| IS1016 transposase [Neisseria meningitidis Z2491]
MRKSRLSRYKQNKLIELFVAGVTARTAAELVGVNKNTAAYYFHRLRLLIYQNSPHLEMFDGEVEADESYFGGQRKGKRGG
GAAGKVAVFGLLKRNGKVYTVTVPNTQTATLFPIIREQVKPDSIVYTDCYRSYDVLDVREFSHFSFAETSF
>Pi_piggyF1transposase  (piggyBac) piggyBac transposase [Phytophthora infestans]
MVRIRNSRREKPAVPAAATHDIDFGHLWRQLRAAGWKSKRPSGLQTEWSYSSPDNTHVFVGEKSVVDYAFDSGLLEEADA
DAQVRDEGGGELDQAGADSSGEEQQHEGEDVVRPSQIDTSVLLSQHTIDRMFGTPSDDDIKLSQTAVSRAFNLSPGDLQD
GGAREAAAGLHLLSEASGLENEGDVDEEEAAASQPRRRTLTPLSGKEDVNVLLDEEKPSDYENYSSGDSDDDGMSDFNSD
SGAGMFEEDDDVLSDSDAIEMDKAFIAALQVGNNALSRTAATEREQTLRGMQWTPVSSEYETDAAAYPGLGTEEARPVPD
LLQLWRSPILTFFYFMPKSLWVSIAAETNRYGLQQAGKRARNIQARQTDLRRETIKQITRRLKAKAAYSTHEILHVVGLL
VARMLCPQKKRFGAHWSMAEDGAVPAGLFGRFMTRDRCQSIMRDLHFVDNTIDHGNDKLWKLRPVVDKVQERFLLGWSLF
AIFSFDEGILPSTSKRNTTRMFMADKSHRYGSKLFMVCDAQTAYCHRFEVYVGKRASAGGPDTSVDFKTGAAAVVRNLKI
VLAQSRHKWHTVVIDRYYSSVLLAIELLSMKVYVIGTIMTNRLGFNPNLRATSKTRPVSIPHGTFSFSRSIAIPTMISCV
WWDRKPVYYLCTGSIMAASTIERKIKRIGAVRVPCPSAVNDYQNWMIVVDVHDQLRLQSYSLQMSTRFTKYYKSLFLGLL
DMVMVNAYLTHKEGAKIKGMAAMKRSEWFCVLQNELLQLKAEDFAGVEATPPPASQKRQRTPVRLTHALQQSEDWVTVTE
VQKRRQRSCKVCALLRTEKKKSFATTFFCERCSVDNAKCWLCNRIRREYKGVAKTCNDIWHDDFDAGQAIPPNLGKRIVL
RRPGQKAGQRKKTRRELRLGHDAGSDDGNGGDNEND
>gi|168701107|ref|ZP_02733384.1| IS1016 transposase [Gemmata obscuriglobus UQM 2246]
MTLEEYERHLVGQLCWRCHQATHQNSARQRQCPSCRAKWSYHRRKTEWELLRAFALSTTAHHAARVVRCSYPTAYAAYTR
FRLTLQAMTDEEKRPLLGALERDESYFGGKRKGKRGRGAGGKVPVFGILERAGRVYTVAVPNCSKETLMAKIQAATVKGS
VFYTDEFASYNDVQSHGKHVPINHQETFGVGAAHINGIEGFWSYAKRLYRHVHGVEPGNFPLYLAEYEFRYNHRGEHLMT
LLYNRLIRAAAPTQTQP
>EuthAT-2_tp#DNA/hAT-Ac 727-2559 [Eutheria]
MSLSRKSPIWEFFTSCEDELKAECQLCHLKISRGGKTPKSCTTTSMINHLRSRHNKEYKEYEEKKKVLEKNEVPKTHFVL
TNQTSKQQTLQECFKKTIPYSFESMEAKNLNKKLVEMIAIDCQPFSVVEDKGFLRFAQAMNPRYKVPSRKHVTEKLFPEL
YSAVHKKVSDIIKCATSVSCTSDIWTCRNNQKSFLSLTAWWINDEFNYASALLACREISGSHTANNIVNLIEEIFIEWKI
SKEKCHAIVIDNGTNMVKAMSDLGITSIRCFVHTLQLCVQKVIIAQRNVTELLAVSRKIVGHFHHSSSAKDKLHDIQEIL
ELPCHVLIQDVQTRWNSSYYMLKRLLEQKKALILYFADNNTNIAGLTNNQWLLAEKVVRLLEPAEEVTKLMCLESASISY
MIPAVKILLSFYSREDAEIGVHAMKAEMQMEIQRRFCYLESQLHCSIATFLDPRFKDKFFSSDCVKQQVHAKILEIKXIS
EGNNLKSASENIQKASSSSSAQSFSLWDCFNEIASSPSTKSSSPGVEEEISLYLSQLLLERKESLITWWQHHHQQYPILA
ELAKKYLAPPPTSVESEHLFSIANVQYSDRRSNLAADSAEKLLFLHYNVKL
>Pi_TransO2  orf2 in transposon [Phytophthora infestans]
MESAVSTVPDASTSSGACVSTHRTAVQKAGSKRTVPPPSSDDYSTWTVDQLKLKCTARKLSVGKHSNKADRVTILQGYDE
SQNAIELLLDRQRQAKRCRGPSVETTQRRSKHCLYRLLNVLFSKDLFEKFITSGDALTRRELDEGGREFWEQVADAFSTF
NDDFDLLVSPDSLFEGIEPQLITAHSGAKLKSMWKKCNSRFAAAEGRCKLSGSHDEFWQFCQGDKVAMYVHLWCEERGSG
QEFCATCIYEDNEDDESKEREPSEKKQKVNRKRQKQDDQRKRLDSVSILTEALNKLVEIEVSSAKGALIEEKTTVARLQR
EKMERDLLVEKLAAVDGILARRRQALHDLGIRIHENGLKGMDVADLERERESAFRRVQTAQEKSDELQDHIMRE
>Q97SC5_STRPN/157-255 transposon family T12 Pfam:PF01610
ILSWDEFSYQKGKLAFIAQDFNTKKIMTILDNRRQTTIRNHFFKYSKEARKKVKVVTVDMSGSYIPLIKKLFPNAKIVLD
RFHIVQHMSRALNQTRINI
>F14C23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDSDIIYPISDSTWVSPVHCVPKKGGMTVVKNDLDELIPTRTITZHRMRIDYMKLNAVTRKDHFPLPFTDQMLERLANHV
YYCFLDGYSGFFQIAIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPGTFQRSMISIFSDFIEEIMEVFMDHFSVYRSSFT
SCLLNLCRVLERCEETNLVLNZEKCHFM
>F21A17 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
EAGIIYPISNSDWVSPLHVVPKKGGVTDVKNDKNELIHTRTVTGHRMCIDYTKLNGATRKDHFPLPFIDQMLETLANHKY
YCFLDGYSGFFQIPIHPDDQEKTTFTCLYGIFAYHRMSFGLCNAPAIFQRYMMSIFTYMIEDFTEVFMDDFSIYGFSFEA
CLENLCKVLARCEEKNLILNWEKCHFKVHEGIVLGQKV
>F28H19 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
PISDSTWVSPVHCVPKKGGMTVIKNDHDELIPTRTITGHRMCIDYRKLNAATRKDHFPLPFIDQMLERLANHVYYCFLDG
YSGFFQIAIHPNDQEKITFTCPYGTFAYKRMPFGLCNAPGTFQRSMTSIFSDFIEKIMEVFMDDFSVYGSSFSSCLLNLC
KVLERCEETNLVLNWEKZHFMVQEGIVLGHKI
>Athila1-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGIIYPISDSTWVSPVHVVPKKGGVTVVKNDNDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHT
HYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQRCMMSIFSDLIENVVEVFMDDFSVYGDSFA
SCLSNLCRVLKRCEETNLVLNWEKCHCMVRDGIVLGHKI
>Tat4-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)T24H24-Lys reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGAGSIVEVKYPEWLANPVVVKKKNGKLRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQIPMHK
DDQEKTSFITDRGTYCYKVMPFGLKNAGARYQRLVNQMFAPQLGKTMEVYIDDMLVKSKKSADHIEHLTACFETLNKYNM
KLNPAKCSFGVTSGEFLGYIV
>aK2K18 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
SIREVEYLEWMANTVVLKKKNGKDVVCIDFTDLNKACPKDSFPLPASRSKDRLVESTARNELLTFMDVFSGYNQIMMNPE
DQEKTSFITNRGIYCZZVMPFGLINAGATYQRLVNKMFHKHLGKTMEVYINDMFFKLLKKEDHVKHLEECFEILNQYQMK
LNPAKCTFGVPSGEFLGYIV
>aT5H22 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVQYPDWVAITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQIMMNP
EDQEKTSFITDRGIYCYKVMRFGLKNAGATYQWLVNKMFNEHLRKTMEVSIDDTLVKSLKKEDHVKHLGECFEILNQYQM
KLNLAKCTFGVPSGEFLGYIV
>aF3D18 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVQYPNWLVNTVMVKKKNGKDRVCIDFTDLNKACPKDSFPLPHVDRLVESTAGNELLSFMDAFSRYNQIMMNP
EDQEKTSFITDRGIYCYKVMPFGLKNARATYQRPVNKMFKEHLGKTMEVYIDDMLVKSLKKENHVKHLEEYFAILNQYQI
KLNPAKCTFGVPSGEFLGYIV
>aF14G16 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
NDEVVKKKNGKDRVCIYFTDLNKACLKDSFPLPHIDRLVDSTAGNELLFFMDAFSGYNQIMMNPEDQEKTSFITDRGIYC
YKVMPFGLKNGGATYQRLVNKMFNEHLGKTMEVYIDDMLVKSLKKEDHVKHLEECFAILNQYQMKLNPAKCTFGVPSGEF
LGYIV
>aF7I20 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
SITEAKYIDWLANPVVVZKKNGKWKVCVDFTDHNKACPKDSFPLPHIDRLVESTSENKLLSFMDAFPGYNHIMMNPEDZE
KNAFDTKLGIFCYRVMPFGLKNAGATYQRFVNKIFALQIGKTMEVYIDDMLVKSMAEEEHISHLRECFQQLNLYNVKLNP
AKCRFGVRSGEFLGYLV
>aT5L23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LRIGSITEAKYPDWIANPVVVEMKNGKWRVCVDFTDLNKACSKDSFLLPHIDRLVESTSGNKLLSFMDFAGYNQIMMNPE
DQEKTVFYKEQGIFCYRVMPFGLKNAGATYQRFVNKIFALQIGKTMEVYIDDMLVKSMTKKDHISHLRECFKQLNLYNVK
LNPAKCRYGVRSGEFLGYLV
>Athila4-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLDHKI
>At1g36190.1/92-340 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) [Arabidopsis thaliana]
LDPNRPPGTFWFEDDPSVPATVRSIFERDFKELHANWSMTPQHVVDRWFETFAQMYNWDKTINKRVKTEFEAKLKERMTD
QVCRWKGKWREKGDAAMPRWFDPAVWAGLISFWRDPKSELKSINSRNARLHDPDGLGIHKHRSGQTSYKAHARKRCELTG
ETTPNFLVLLDKTHRKPDGSFIDGKSEEIYNEVSSRIQEESSQLCSNNTTESTASGGGSKEEREDIWGWFIAARSRMSSH
WSFSSSRRS
>F7K2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LRSQVIRPSVSPFSSPVLLVKKKDGGWTFCVDYRALNEATIPDRYPIPVIEELLDELKGATVFSKLDLKSGYHQIRMKMS
DVEKTAFKTHQGHYEFLVMPFGLTNAPSTFHSVMNDLFRPYLRKFVLVFFDDILVYSPDMESHLKHLEIVLQLLKLHRLY
ANLKKCSFGSTQIAYLGHII
>At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) [Arabidopsis thaliana]
LHPSRLNGAKWFKHHTQVSTAVRKVIQSCFKGPWCSWKRVPPFYKRSWFSLFKKRFNWDDSINYQVEKEFNKLAAYRLKG
MISHAKSGGEKPDWILSDYWTIMQRYWATEKVKATSEKARASRMSDRNGLGPHSHRAGSRSFLRVKDVLEANNEDYSFIA
VMKKTHQKPDGSYVDQRARLVADTYEKHVQERLGQLESAGEENLRAETLDNHEKNEIYIKAAGSSKHGHIFGLGALMETL
PSVG
>gi|22128687|gb|AAM92800.1| (helitron ORF) [Oryza sativa (japonica cultivar-group)]
METTHEDDINDECHMFAGEDMDFDDDDDDEYYMFAGGDGEDEEDIDLNEIEHDSVEHDPYDHVYSNIPRNTHVLKPTANC
KHCGAKKFQYETNGFCCRGGKIKLSNLETPPELMRLWSSMDSDATHFRDNIRFFNGHFSFTTLGVSLDERYTNMRSGVYT
FRAHGQIYHNIHSFGQRDNAPEHLELYFYDDDPSLNHRFRRSPSLDQEVVRRLVEVLHGNPYSQTFRSLAQADDLEEYRV
TLNLDNRLDQRQYNVPVTSEVAAVWVEGNELRTHFERSVVLYGNNNTKYNIQSYYGCYDPLSYPLFFPKGELGWHPEIPK
VGVSIDDVIASRGNNHADSDSNSRLCVSVRDYYCYKFQMRRGIFNPLLYGKRLFQQFAVDMYIKVESTRLDFIRRHQVEI
RADLYKGVVDSIHAGESRASQVGKRTVLPASFIGGNRDMKRRYMDSMALVQKYGKPDIFLTMTCNPNWEEIIGNLEPGQT
PQDRPDLIVRVFRAKLEDLKKQLLEKHILGKVIAYAYVVEFQKRGLPHAHFLLIMDGKYKLTSPEQYDCIISAELPNKHK
YPELYEMVVKHMMHGPCGTLNRKNVCMQDGSCKNRYPRAFNAVTINGKDSYPVYRRRDNKRCAKVRKQMLDNRWVVPYNP
YLLRMYNCHINVEVCSSIKAVKYLFKYIYKGHDRASVTLGEADSNGNIDEIQQYRDARWVTPPEALWRIYSFDLSKVHPP
VKQLQLHLPNMHMVSFRAGQDLHDVVERNGVEKSMLTEYFEANKVNEDARGILYKDFPEAFTWQAGPKVWQRRKRRITQI
GRIVTAHPAEGERYYLRVLLTHVTGATSFEHLRTVDGEVCSSFREAAEKRGLIEADNTLDECLTEAEVFQMPSSLRRLFA
TILVFCEPSDVLGLWNKHLEGMLDDYRRSHTCPRTIEQMVLLDIRNMLQSMGKEITSFPLPEIDESYDTSGSEPREIFEE
STIEVDHGHMDLSSSLNPEQRCAYDEILSAIEGGQGGLFFVDGPGGTGKTFLYKALLATIRGQGKIAVATATSGVAASIM
PGGRTAHSRFKIPLNIDDGGVCSFTKQSGTAKLLQRASLIIWDEASMTKRQAVEALDRSMRDIMDRPDVPFGGKTVVFGG
DFRQVLPVVRKGTRPQITDATLRKSYLWDCMRQLRLVTNMRAQNDRWFAEFLLRVGNGIEEACDDGYIRLPDEICVPCTG
NDDDLNNLIDNVFPMLDANLADPNYITSRAILSTRNEYVDQINMKMIDRFRGEEMLYHSFDRAEDDPHNYYPPEFLNSLT
PNGLPPHILKLKINCPVILLRNIDPANGLCNGTRLVVRGFQRNTIDAEIVLGQHAGKRVFLPRIPLCPSDDEMFPFRFKR
KQFPVRLSFAMTINKAQGQTIPNVGVYLPDPVFSHGQLYVALSRATARMNIKILAVQSKDKSHRSMSRGTYTRNIVYREV
LTS
>gi|154417940|ref|XP_001581989.1| (helitron ORF)  TVAG_172600 [Trichomonas vaginalis G3]
MNAFMEGKSDEGINIAIIGETSNLQRNSKEYADKIEKNENGEIFYHPQIVPYLSALYDQLAFPLIFWNGHGGCGRLNNNE
EWSYKHMRRTACSLLMQPNSHWIHKLGYLREEYICSIFGRDLHHRIENAFYRQINLRRESEVKKKSDNPEENEGTTTYIP
SSFTNGPAYWKKIGKKVILLSTKYGQPTLFITITCNPGWIENIALDRCSANTNAANIMLIYNERRKTFIKFLKDSKIFGD
VNALLWRDEFQQRGYPHTHILLWTTLDTQNVNQLDDVINTQYPKTNDIRQLDKFNDLKILINKYEIHGCTNRCKDKTTGK
CTMGFPKEVRDQTEIINGRVHYKRSAEEVKIVPHNLKILTLWRAHHEIEIVTSNDCILYITKYVTKFSDSAEVSLQSQLR
FIQKEVEEKDQLHKYGASIITSSCQAFGTLAGYHNYGMFPKVELLNFHLEGDRKIVEKADESEEDLLKRIDDTLSYLLRY
FSRPKTEEFRNLAFVEYYERYIVSPNKPAKIEAIQDEGNGTDDKTKRWVYRRTKECVFALQLVPYQNTELFCLRLILEKV
PGYSYNDLIMGKESFLKAAESLRLIESGKEAKICLKEGIKNGYFGYILRQMLVNFSIQGINIEKLTLKFQNELMKDLEEK
TIDNLYMHLYSEFKYAKAKCIPQFLVNYDHLYKLEQNKEKNQKDLSDLNEQQAFVMKDILKNWDRDQLIFIQGRAGTGKT
YFCKELIKELENQKKDVLICGTTGIAACQYENGCTAHSLFGLKCDIEENFDDYSSLIGKDSYKGYLIKKADVIMIDEVSM
LTHTIAEKIYFILRFLMSRKDCKGDELKKEPAFGGKKMIFIGDFLQLPPVIPNSKYSLSEKLITKCSWWNMVKMYGLSMP
MRCSNKEYNNFLIKVANNEVGDMKWSDLKDITVTDDPKTALDFLLHGVDMRNKIPLKIQWIAATNNLVNKVNEEVEIMKL
NSIYDYCQNQANPEEAKKSLDFGKIYAITNIQTEDNKKKSEIRIDKGQLADMVRNWKFADLPNPVVKLLYGMPMSLLRNL
NTHDGLVKNKRCWIIGRAGEAAIVEFENGEKAIIPKIKIPKDLSNLIIERKQIPLKTVVAGTIHKSQGLTLDRVVIDFRD
KFFEHGMLYVALSRIRDPKNLCILLPEKREDSEIDDIDSIIPIADPEIIELIKKIEQHTKEMMENLSNQNFLSDEENIPN
DEYGSDAGNSNQNFLSDEENIPNDEYGSDAGNSNQNFLSDEENIPNDEYGSDAGNSNQNFLSDEENIPNDEYGSDAGNSN
QNFLSDEENIPNDEYGSDAGNSNQNFLSDEENIPNDEYGSDAGNSNQNFLSDEENIPNDEYGSDAGNSNQNFLSDEENIP
NDEYGSDAGNSNQNFLSDEENIPNDEYGSDAGNSNQNFLSDEENIPNDEYGSDAGNSNQNFLSDEENIPNDEYGSDAGNP
NQNFLSDEENIPNDDNGSDAINSNENFISDDENSEIIPNPNFFSKEVVDQLINENKAFRLSSIINTQTVLLNEISLKSIM
FGVLYEFWKQKSATKFITPYNIIILKEDDAVQNRMKGSIIIQNHEGNDLDIRYIGPEIFLHICKLNSTSLIWSLGIIFLE
LVLGDIFEDCYNREIEKNLISYMIKKLSLVLKKFNPDIAQKLKNF
>T13P21/T6B13/F26C24-1-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPZGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEA
DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHLRRVMEKLREQKLF
AKLSKCSFWQREMGFLGHIV
>T7B9-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVKYPDWLANRVIVKKKNGKWKVCIDFTDLNKACPKDSFPLPHIDRLVEATTGNELLSFMDAFSGYNQILMRP
NDQEKTAFITDZGTYCYKVMPFGLKNAGATYQRLVNRMFADQLGKTMEVYIDDMLVKLAREKDHVPQLRECFKILNKFEM
KLNPEKCSFEVPSGEFLGYLV
>F4M19 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LNAGSIVEVRYPDWLSIPVVIEKKNGKWRVCVDFTDLNKACPKDSFPLPRIDQLVEAKAGNELLSFMDAFSGYNQILMHK
NDREKTAFITEQGTFCYKVMPFGLKNAGATYQRLVNRMFENQFDRTMEVYIDDMLVKFTQAADHIAHLRQCFEVLNKYNM
KLNPAKCTFGVTSGEFLGYLV
>MJI6-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGAPMLFVKKKDRSFRLCIDYRELNRVTVKNKYPLPRIDELLDQLRVATCFSKIDLTSGYHQIPIAEA
DVRKTAFRTRYGHFEFVVMPFGLANAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLF
AKLSKCNFWQREMGFLGHIV
>T32B20 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRLNTSPWRTSVLFVKKKDGSFRLCIDYRELNRVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEA
DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHDVHLRRVMEKLREEKLF
AKLSKCSFWQRKMGFLGHIV
>MJI6-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDARIIRPSISPFSSPVLLVRKKDGGWRFGVDYRAMNNVTIPDRYPIPLVDELLDELKGATVFSKLDLRSGYHQIRVRAT
DVEKTAFKTHQGHYEFLVMPFGLTNMPSTFQSVMNDAFRPYLRRFVLVFFNDILIYSKDMETHLEHLKKVLDIMKKHQFY
ANVKKCSFGNSEISYLGHII
>GB:AAD28752 putative transposase (ISa-element) [Sinorhizobium meliloti]
MKSVCETLGVARSNIAARAAGSPSRARGRPPLPDRELVEDIKAVIADMPTYGYRRVHAILRRNARKLGRSWPNAKRVYRV
MKLHNLLLVRHTGAVDNRLHEGQVAVERSNIRWCSDGFEIGCDNKEKVRVAFALDCCDREAIAHVATTEGIKSQDVQDLV
ITAVENRFGRINMLSEPIEWLTDNGSCFIAKDTASLLRDIGMEPCTTPVRSPQSNGMAEAFVKTFKRDYVAVNPTPDAET
VMAQLPFWFEHYNNLHPHSALGYQSPREFISSQSQT
>GB:CAA41347 ORF 1 (ISa-element) [Ralstonia sp. CH34]
MTRTKYQQLQPEERMRIEIWKAEDVSLRAMARRLGRAPSTLMRELRRNATARGGYGAMSAQACRTQRLKASRPVAKLAPD
GVLWGVVRHFLDQKWSPQEISGTLKRAFPDQPDLNVSHETIYNAIYAYPRGELRRQLIACLRQARTKRLPRSRGTDRRGQ
IPDMVSIHVRPPEVNDRLMPGHWEGDLIKGAGNQSAVGVLVERMSRAVLLVKMPDATAASALAGFTGKLQSLVAPLRQTL
TYDQGREMARHAELSAATGVRVYFCDPHSPWQRGTCENTNGLLRQYLPKGTDLSVYSQEELDAIADSLNGRPRKTLNWHS
PLQVLAQVLANPTDRLPVQ
>GB:CAA27831 unidentified reading frame 2 (195 aa) (ISa-element) [Agrobacterium tumefaciens]
MGNHAMLLEKHTAVRKGRLHDGKVMVMRSNLRWCSDGLEFACWNGEVIRLAFIIDAFDREIIAWTAVANAGISGSDVRDM
MLEAVEKRFHATRAPHAIEHLSDNGSAYTARDTRLFAQALNLTPCFTPVASPQSNGMSEAFVKTLKRDYIRISALPDAQT
ALRLIDGWIEDYNEIHPHSALKMASPRQFIRAKSI
>Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)
KKMSLSVYVEEDKGDATYETLELSSLGLAVGQCFETKDHLETRLKILTVLQKFDFDVSKSTPTLYFVKCWIKGCRWRVRA
TPVDEYPKFHVRVYVSEHTCSVTKRSSRSRQATHEILGLLYKNYVGGIGPKVLPMHVAEALTKRFQIKMDYWKAYRTLRS
AR
>GB:CAA34970 transposase IS91 (ISb-element) [Escherichia coli]
MLPRFADIFQQGNRWLNWLEKQPEGSVRPVVTESVTKIMACGTTLMGYTQWCCSSPDCCHTKKVCFRCKSRSCPHCGVKA
GAQWIQYLLSLVPDCPWQHIVFTLPCQYWSLVFHNRWLLAEMSRIAADVILEICHQTDVEPGIFTVIHTWGRDQQWHPHI
HLSTTAGGVTSGHTWKNLHFYARKVMSMWRYRITRLLSRKYPELVIPDELAVEGNSKRDWNCFLDTHYRRGWNVNISRVM
DNATHVAVYFGSYLKKPPVPMSRLEHYAGQDEIGLRYNSHRTKREEYLLMSGDEFMERFSWHVADKGFRMVRYYGFLSPV
KRRLLEEVVYVITETVRKTAMQIRWRGMYQRLLKVDPLKCILCGSQMRFTGLKRGYRLAELVLMHERLGTTAGVRLRAAE
GKLRPFYRKRSKKPPFIPCINQCHPV
>GB:AAC71698 unknown (ISa-element) [Mycobacterium avium]
MPKEQSPGKPTTRRYSPEEKAAAVRMVRTLRAELGTEHGTVHRVARQLGYGIESVRAWVRQADIDDGYAPGVSTAESKRI
KDLEQENRELKRANEILKRAASFFGAELDRQHRK
>GB:CAA05034 transposase (ISa-element) [Wolinella succinogenes]
MVEFSKDLGEEKMSRKRKSYSAEFKTRVVLELLGGEETVAQIASKYEITPKSLIDWKKQFLENASLVFDVGSATKAYKDE
IEELKTENDALAKKLGKTTIERDWAVGKLKSLGLSNKKDLVTPKLKNLSTARQCEIIDLNRSTLYYEPKPISDNDLKIMK
RIDEIYTDISSTYGYRFMHRQLLEDGFSIGVNKVNKLMNTMGIQAIFPKKKRHTSIKNYKHKIYPYLLRELEINRANQVW
SGDITYIPIKGGFVYLCAIIDWHSKTILSWKISTTMDTSLVTDVLKEAIEKYDIPVIFNSDQGSQYTSHEHTELLKKHNI
QISMNGKGRSIDNIAIERFFRTLKYDEIYINEYSSISDLRFKVSRYINFYNHNRFHSALNYQKPMNVYLEGLKNVA
>GB:CAA23542 IS-2 ORF 1 (ISa-element)  [Escherichia coli]
MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQI
KELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
>GB:AAB40346 transposase (ISa-element) [Streptomyces lividans]
MIEHLRDKGLGVGFACRVLGLSESAYYARKKRPKSARRLRDEQLKPLIEQVHAESGGTYGARRITRALRRKGVVVARCTV
ERLMRELGLEGVIRGQRRRTTVPEPSAPRPPDLVDRDFTASRPDQLWVADMTYVRTWSGWAYVAFVLDVYSRMIVGWQVA
NHMRTELPLDALEMALWRRRIKKDSGLVHHSDRGSQYVSIRYTERLSEIGASASVGSVADSYDNAMAEALNGTFKAELIE
MQGPWRDVDQVERAIFQWVTWYNEERLHSALDYVPPAEYERAWWREQEATPQSA
>GB:CAB61574 transposase B (ISa-element) [Yersinia enterocolitica]
MIKPDVLMLHAAAKHVHAEMDATYGSRRMCIELREQGFNVGRYRVRQIMKNLLLVAKRPGRHRYPRGGKPAVVAANLLNR
QFNPETLNTWWSGDITYLRTAQGWLYLAIVMDLCSRKIVSWAFSDKPDSDLTVRALRLAVNKRRPTGSVVFHSDQGAQYT
SAQFQSCQQELDVTGSMSRKGNCLDNAVTERFFRSLKAERVNYRRYETRSQGIADVIDYIDSFYNLKRRHYRLGNISPDE
YERRLQQCA
>GB:AAA25196 ORF2 (ISa-element) [Lactococcus lactis]
MAQTIQTLALNVRLSCQLLDVPESSYYERINRHPSKTQLRRQYLSLKISQLFNANRGIYGAPKIHHLLLKQGEKVGLKLV
QKLMKQLQLKSVVIKKFKPGYSLSDHINRKNLIQTEPTKKNKVWSTDITYIPTQQGWAYLSTIMDRYTKKVIAWDLGKRM
TVELVQRTLNKAIKSQDYPEAVILHSDQGSQYTSLEYEELLKYYGMTHSFSRRGYPYHNASLESWHGHLKREWVYQFKYK
NFEEAYQSIFWYIEAFYNSKRIHQSLGYLTPNQFEKVSA
>Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain)
PAGPSRQSGTEDSDNSAFFDVKYEGDKLFVGRVFKSKFDCKIKIAIHAINCKFHFRTARSTPKFMVLKCISKTCPWRVYA
SKVDSSDSFQVRQANQRHTCTIDQRRRYHRLATTQVIGKLMQSRFLGIKRGPNAAVIRKFLLDDYHVSISYLKAWRAREV
AM
>gi|29423274|gb|AAO73524.1| envelope-like protein [Glycine max] (SIRE1) (Ty1_Copia-family)
QLQQSERAQTNHLTLIARSLLNQGKFDRCFTRPSTFLIQIYICLAFVFLPAFPNSLLRFTKSFQTLCFSMATSSKETAAS
GSPSVPSSSHQEQPELNIQPIQIIPGQASVPEKLVPRRPQGVKIAENPSPATSPREVDTEMDKKIRSIVSSILKDASVPE
ADEDVPTSSNPNVSVPDVKKDVPTSSAPNAEALPSPGEEGSTEEDDQAAEETPAPRAPEPAPGDLIDLEEVESDEEPIAN
RLAPGIAERLQSRKGKTPIKRSGRIKTMAQKKSTPITPATSRRSKVAIPSKKRKEISSSDSDKDVELDVSTSKKAKTSGK
KVPGNVPDAPLDNISFHSIGNVEKWKYVYQRRLAVERELGRDALDCKEIMDLIKAGGLLKTVSKLGDCYEGLVREFIVNI
PSDISNRKSDEYQKVFVRGKCVKFSPAVINKYLGRPTDGVIDIDVSEHQIAKEITAKRVQHWPKKGKLSAGKLSVKYAIL
HRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFDQTVKHSESFAIKLPIAFPTVLCGIMLSQHPNMLNYTDS
VMKRESPLSLHYKLFEGTHVPDIVSTSVSTSGKAAASGAVSKDALIAELKDTCKVLEATIKATTEKKMELELLIKRLSES
GIDDEEAAEEEGEAAEEEEEAAEEEEDAAEETESDDDSEATP
>gi|12958098|gb|AAK07486.1| gag-pol polyprotein [Clonorchis sinensis] (Gypsy_Ty3-family)
MEAHFDSADLVENAISIRLPDYNPRNPRVWFHQVEAVFATRRITSQATRFSYVVQHLPCDVATEVEDLLEDIPKENPYDS
LRAAVISRTGKSENKMLRDLFTTVELGDRSPSQLLRHMRSLLCGRKLAVEIMAQLWLDKLPPSMSRVISAFVDDHSLEQL
AQMADKIHETYPSNPVNSVSRSAPTASTDSDPILASISQLQAKFDTLTDRLQRLEINKHRPRSRSRSLSRARPSWCWYHQ
TFGPQAHKTPHQARKCQPPCSFKPRSNTPCKQPGQSVTATTVCGPPRTSRLFHITDRSSGLRFLVDTGAEVSVLPHKTPL
HDSASYSLQAANGTRIATYGERSLTLDLGLRRAFKWIFLLADVQTPIIGADFLTHYNLSVDVRNKRLLDMLTSLSVNGIS
APASSTGIRVILPDSHFADILRDFPTLTHPCQYTQPVTHSVVHHIQTKGPPVHANPRRLHPDKLPIAKHEFEHMLELGII
RTSSSHWSSPLHMVPKKSKGDWRPCGDYRSLNNATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPDDIPKT
AITTPFDLFEFTRMPFGLRNAAQTFQRFMDEVLRGLPFVYAYLDDVLIASTSPTEHAAHLRAVFERLSTYSIRLNIDKCL
FGVTSLDFLGHHIDSTGISPLPNRILALESFPIPTTLTQLRRFIGIINYYRRFIPHCADILQPLTDLLGCKEKSVTLPSV
AIAAFERAKQAIAHATKLSFLDTHESTKLILTTDASNAAVGAVLHQVVNNASQPLAFFSQKMQAAQTRYSTFGRELLAIY
LAIRHFRHLLEGRSFTIQTDHKPLTYAFNAKPDRYSPREIRHLDYISQFTTDIRYTPGSDNVVADALSRPDINALHPSKQ
LDLAKLANLQHSDPNFLPILSFPSFQVSSIPLPLQSGSIFCDMSTGSARPIVPEAFRRVVFDHFHGFSHPGIRATRKLIS
ARFVWPFMNKDLTSWAKQCIACQRSKVTRHTNSPIGSFAVPDARFTHVHLDIVGPLSPSNGFTHILTMIDRFTRWPVAVP
ISDTSAETVAFSFLQHWVSNFGTPSTVTTDRGSQFQCNLFREFSTLFGFHHISTTAYHPCSNGLVERFHRYLKAALTAQM
NPSSWSFSLPLILLAIRSTIKEDLHCSPAELVYGTTLRLPGELVSTSGAQPESPVTFVTRLKQHMSDLRATPTRRSTRKE
HISTDLSSTPFVFVRHDATRKPLQPCYDGPFKVIERHSKYLVLERRGKHDTVSIDRLKPAFIEAPTTTSSNPANPATPAP
TQDTPAANLTPSTSRSGRRVRFPQHLADYET
>gi|29423271|gb|AAO73522.1| envelope-like protein [Glycine max] (SIRE1) (Ty1_Copia-family)
QLQQSERAQTNHLTLIARSPQSKFDRCLTRPSTFFIQIYICLAFVFSPAFSNNSLRFTKSFQTLCFSMATSPKETAASGS
PSVPSSPHQEQPEFNIQPIQIIPGQASVPEKLVPRRPQGVKIAENPSPATSPREVDTEMDKKIRSIVSSILKDASVPEAD
EDVPTSSNPNVSVPDVKKDVPTSSAPNAEALPSPSEEGSTEEDDQAAEETPAPRAPEPAPGDLIDLEEVESDEEPIANRL
APGIAERLQSRKGKTPIKRSGRIKTMAQKKSTPITPATSRRSKVAIPSKKRKEISSSDSDKDVELDVSTSKKAKTSGKKV
PGNVPDAPLDNISFHSIGNVEKWKYVYQRRLAVERELGRDALDCKEIMDLIKAAGLLKTVSKLGDCYEGLVREFIVNIPS
DISNRKSDEYQKVFVRGKCVKFSPAVINKYLGRPTDGVIDIDVSEHQIAKEITAKRVQHWPKKGKLSAGKLSVKYAILHR
IGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFDQTVKHSESFAIKLPIAFPTVLCGIMLSQHPNMLNYTDSVM
KRESPLSLHYKLFEGTHVPDIVSTSVSTSGKAAASGAVSKDALIAELKDTCKVLEATIKATTEKKMELELLIKRLSESGI
DDEEAAEEEGEAAEEEEEAAEEEEDAAEETESDDDSEATP
>gi|29423270|gb|AAO73521.1| gag-pol polyprotein [Glycine max] (SIRE1) (Ty1_Copia-family)
MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGN
SKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLATKFENLKMKEEECIHDFHMNILEIANACT
ALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYD
LNTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKKSDVKPSHSKGIQCHGCEGYGHIIAECPTHLK
KHRKGLSVCQSDTESEQESDSDRDVNALTGIFETAEDSSDTDSEITFDELATSYRKLCIKSEKILQQEAQLKKVIADLEA
EKEAHKEEISELKGEVGFLNSKLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKSAGRTTMTEFVPAKNRTGA
TMSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHPHHGTQSSNSRKKMMWVPKHKAVSLVVHTSLRASAKEDW
YLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNF
TKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIE
EGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVKFIREKSETFEVFKE
LSLRLQREKDCVIKRIRSDHGREFENSRLTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWA
EAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNS
RTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELIIGD
PNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEE
GVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPT
HPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQM
QSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGS
LLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGC
FYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHID
IRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGICLLEEL
>gi|29423273|gb|AAO73523.1| gag-pol polyprotein [Glycine max] (SIRE1) (Ty1_Copia-family)
MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGN
SKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACT
ALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYD
LDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTHLK
KHRKGLSVCQSDTESEQESDSDRDVNALIGIFETAEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEA
EKEAHKEEISELKGEVGFLNSKLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKSAGRTTMTEFVPAKNRTGA
TMSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVPKHKAVSLVVHTSLRASAKE
DWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNV
NFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKILDKSAVRGIPNLK
IEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSGTFEVF
KKLSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNL
WAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVF
NSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELII
GDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTN
EEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFAD
PTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQ
QMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQKPYRSMI
GSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSSSMLVGYCDADWAGSADDRKSTSG
GCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKH
IDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGICVLEEL
>gi|12958095|gb|AAK07485.1| gag-pol polyprotein [Clonorchis sinensis] (Gypsy_Ty3-family)
MEAHFDSADLVENAISIRLPDYNPRNPRVWFHQVEAVFATRRITSQATRFSYVVQHLPCDVATEVEDLLEDIPKENPYDS
LRAAVISRTGKSENKMLRDLFTTVELGDRSPSQLLRHMRSLLCGRKLAVEIMAQLWLDKLPPSMSRVISAFVDDHSLEQL
AQMADKIHETYPSNPVNSVSRSAPTASTDSDPILASISQLQAKFDTLTDRLQRLEINKHRPRSRSRSLSRARPSWCWYHQ
TFGPQARKCQPPCSFKPRSNTPCKQPGQSVTATTVCGPPRTSRLFHITDRSSGLRFLVDTGAEVSVLPHKTPLHDSASYS
LQAANGTRIATYGERSLTLDLGLRRAFKWIFLLADVQTPIIGADFLTHYNLSVDVRNKRLLDMLTSLSVNGISAPASSTG
IRVILPDSHFADILRDFPTLTHPCQYTQPVTHSVVHHIQTKGPPVHANPRRLHPDKLPIAKHEFEHMLELGIIRTSSSHW
SSPLHMVPKKSKGDWRPCGDYRSLNNATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPDDIPKTAITTPFG
LFEFTRMPFGLRNAAQTFQRFMDEVLRGLPFVYAYLDDVLIASTSPTEHAAHLRAVFERLSTYSIRLNIDKCLFGVTSLD
FLGHHIDSTGISPLPDRILALESFPIPTTLTQLRRFIGIINYYRRFIPHCADILQPLTDLLGCKEKSVTLPSVAIAAFER
AKQAIAHATKLSFLDTHESTKLILTTDASNAAVGAVLHQVVNNASQPLAFFSQKMQAAQTRYSTFGRELLAIYLAIRHFR
HLLEGRSFTIQTDHKPLTHAFNAKPDRYSPREIRHLDYISQFTTDIRYTPGSDNVVADALSRPDINALHPSKQLDLAKLA
NLQHSDPNFLPILSFPSFQVSSIPLPLQSGSIFCDMSTGSARPIVPEAFRRVVFDHFHGFSHPGIRATRKLISARFVWPF
MNKDLTSWAKQCIACQRSKVTRHTNSPIGSFAVPDARFTHVHLDIVGPLSPSNGFTHILTMIDRFTRWPVAVPISDTSAE
TVAFSFLQHWVSNFGTPSIVTTDRGSQFQCNLFREFSTLFGFHHISTTAYHPCSNGLVERFHRYLKAALTAQMNPSSWSF
SLPLILLAIRSTIKEDLHCSPAELVYGTTLRLPGELVSTSGAQPESPVTFVTRLKQHMSELCATPTRRSTRKEHISADLS
STPFVFVRHDATRKPLQPCYDGPFKVIKRHSKYFVLERSGKHDTVSIDRLKPAFIEAPTTTSSNPANPATPAPTQDTPAA
NLTPSTSRSGRRVRFPQHLADYET
>O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)
DRGEQYVESPPAVEPGMFKKEWEDGIGLTLRQEFPNKAALHEVVDRAAFANSFGYVIKKSDKERYVLKCAKESCSWRLRA
SNISTTDIFSIRRYNKMHSCTRLSKGSSRLRKRKGNPQLVAALLHDHFPGQLETPVPSIIMELVQTKLGVKVSYSTALRG
KYHAI
>Q9SUF8 /145-308 Pfam PF03108 MuDR family transposase (MuDr-element domain)
DNYEMFVDDVQVDEEVVNVEWEDGIGLSLGQEFESKQEVQDLVEKAELLNYFEAAIIKSSPGLYVLKCRGGSGCKWYLRV
AQGKNSDRLSVRTYNKMHTCSRITTSTRRCKRVATPQLVASVLQENFPEGFDTLRPKNLIDLVREKHGVKVSYATALRGK
KQAA
>gi|15724045|gb|AAL06420.1|AF378078_1 reverse transcriptase [Arabidopsis thaliana] (Gypsy_Ty3-family)
VRKEVLKLLDAGIIYPISDSTWVSPVHVVPKKGGVTVVKNDNDELIPTRTITGHRMCIDYRKLNAASRKDHFPSPFIDQM
LERLANHTHYCFLDGYSGFFQIPIHPNDQEKTTFTCPCGTFAYRRMPFGLCNAPATFQRCMMSIFSDLIENVVEVLMDDF
SVYGDSFASCLSNLCRVLKRCEETNLVLNWEKCHFMVRDGIVLGHKIFEKGIEVDRAKIDVMTYLAPPNSVKGIRSFLGH
AGFYRRFIKDFTKV
>gi|15723991|gb|AAL06410.1|AF378034_1 reverse transcriptase [Triticum aestivum] (Gypsy_Ty3-family)
VRKEVLKLLEAGIIYPVAESQWVSPVHCVPKKGGITVVPNDKDELIPQRIITGYRMVIDFRKLNKATKKDHYPLPFIDQM
LERLCKHTHYCFLDGYSGFSQIPVSAKDQSKTTFTCPFGTFAYRRMPFGLCNAPSTFQRCMMAIFSDFCEKICEVFMDEF
SVYGSSFDDCLSNPDRVLQRCEETNLVLNWEKCHFMVNEGIVLGHKVSERGIEVDKAKVDAIEKMPCPKDIKGIRSFLGH
AGFYRRFIKDFTKV
>gi|15723997|gb|AAL06412.1|AF378038_1 reverse transcriptase [Gossypium hirsutum] (Gypsy_Ty3-family)
VRKEVLKLLDAGMIYSIFDSDWVSWVHVVPKKTGVTVVKNSSGELVPTRVQNRWRVCIDYRKLNAATRNDHFPLPFIDQM
LERLANKTHYCCLDGYSGLFQIPVAPEDQDKTTFTCPFGTFAYRRMSFGLCNAPATFQRCMVSIFSDYVEKIIEFFMDDF
TVYGNSFNECLDNLAKILQRCLEFNLVLNYEKCHFMVDKGLILGHIVSSEGIEVNKAKTNIIDSLPYPRFYRRFIKDFTK
V
>O28645_ARCFU/105-328 transposon family T11 Pfam:PF01609
LVFSILNVNAKRSRKKSSILILDWTDISLDLNPFRRRELSNKPYKWGYSTKGFFLGMKMMILIDYNTLTPLFFHIYPANT
HESRIYPVILEMLKRRKLIRFGDSIIMDRGFYAYKNYLIGLRYGIIPLIIPRKNFREERLKGMVSYPLSIFASKNVEKEK
KRYRKLVRKLFEGLKQNLKTLRSIIEDVIKLGKEAFSLRDLHCYTVDSVRKKCALSVLLVGMTV
>O54644_HALSA/24-278 transposon family T11 Pfam:PF01609
LREILDDAIENLDTGRADLSGRLERFRDVLIADATIVSLYQDAADVYAATGEDQAELKLHLIESLSTGLPTRFRTTDGTT
HERSQLPTGEWVADALILLDLGFYDFWLFDRIDQNGGWFVSRVKDNANFEIVEELRTWRGNSIPLEGESLQAVLDDLQRQ
EIDVRITLSFERKRGSGASATRTFRLVGLRNEETEEYHLYLTNLGNDDYSAPDIAQLYRARWEVELLFKGGCHRTSSTPK
SRVNAEVDESSDPAG
>P71168_ENTAG/105-350 transposon family T11 Pfam:PF01609
LFDITQQHWHAEAKHPLWHGLTLNAVDGVVWHTQDTPENAEAFGKASNQHGERGYPQVRMVCLMELSSHLLRASVMDSYD
VNEMRLAAQLAASAPDNSITLFDKGFYSLGLLHDWHNAGENRHWLTPLKKNTQYEVVCKPGKQDELIRLKTSPQARKQWE
GLPEEMTVRLIRRKVNGVERQVLTSMTDAMRYPAASVAELYKHRWEIELGYRETKQFLLGNRWALRSKLPEMVRQELWGI
LLSYNL
>Q9XB34_KLEOX/110-362 transposon family T11 Pfam:PF01609
INFKVFKKLLTKSKLTSITIDIDSSVINVEGHQEGASKGYNPKKLGNRCYNIQFAFCDELKAYVTGFVRSGNTYTANGAA
EMIKEIVANIKSDDLEILFRMDSGYFDEKIIETIESLGCKYLIKAKSYSTLTSQATNSSIVFVKGEEGRETTELYTKLVK
WEKDRRFVVSRVLKPEKERAQLSLLEGSEYDYFFFVTNTTLLSEKVVIYYEKRGNAENYIKEAKYDMAVGHLLLKSFWAN
EAVFQMMMLSYNL
>P95919_SULSO/56-294 transposon family T11 Pfam:PF01609
RGEKVISKGQRTFKFYPIYREVKGEINVVAVDETGLTVGEKEQEKAEGFLLYNWKRKGVKMRSLDLVYPLRLPLLVEVAD
LRSDSPSQFLLRSVREVSQYMEIDYVVADAGFLNLGVIKEMPVKTIVRGKSNLKGFKELSNVPLVEKRYEVKDKVYVAYR
VLEFEGLYYYDVVYVKGKPRHFMFVTNFEGDPYELAELYRLRWQVEEGFKVRKARIRYVRKLSNKIFLFLYYTVLDSAW
>Q9RBU3_RALSO/126-314 transposon family T11 Pfam:PF01609
IGIMLCERGLMMKEGTIVDATIIEAPPSTKNADKSRDPEMHQTKKGNEWHFGMKAHIGVDASSGLVHSVVGTAANASDVS
QAHALLHGHETDAFGDAGYTGVEKRDAMQGKRATWHVAIKRGKIKAMREGPIKDLLIAVERTKAQIRARVEHPFHVIKNL
FGHRKVRYKGLAKNTAQLFSLFGLANLVL
>Q38743_ANTMA/630-712 (hAT) hAT dimerisation domain, hATC (PF05699)
EIHLFVQKPPQKFDKDFDILKWWRQNESLTPVLARIARDLLSSQMSTVASERAFSAGHRVLTDARNRLKPGSVKFCMIWK
DML
>Q9XIF1_ARATH/184-268 (hAT) hAT dimerisation domain, hATC (PF05699)
NLQNYLDDPRLDLRSFTDMEVLSYWKGDGQRYGDLASLASAILSIPITTVAAESSFSIGGRILNPFRNRLLSRNVQALLC
TRNWL
>Q9R9Q9_RHIME/98-268 transposon family T11 Pfam:PF01609
LVMETRELEGRQASPTAGVIDSQSVKTTESGGIRGFDAGKKINGRKRHIIVDTLGLMVGLMVHGADVQDRDGAPDLLKSI
RHRWPWLLHVFADGGYAGEKLKSRLKKIGKWTLDIIKRSDKTKAFEILPRRWVVERTFAWLGRCRRLAKDFEKSIASAQA
WITIAHIRMLT
>O69073_PSESG/120-309 transposon family T11 Pfam:PF01609
INGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGNRDPEMHQTKKGNQYYFGAKAHIGADYESGLVHSVVVTAANVADVT
QVAKLLHGEENVVCADAGYTGVEKREEHAGRKVIWQIAARRSTYKKHGKRSVLYKAIRTIEKAKAQVRAKVEHPFRVIKR
QFGYEKVRFRGLAKNTAQIVTLFALSNLWM
>T6501_BRUOV/71-236 transposon family T11 Pfam:PF01609
LADTPDFEYVLIDSTISKVHADAAGAKGGLKLPASVSRGGLTTKLHAVVDAIGLPLRIKPTPGHYGDCPQASSLLSGLKG
VGHVLADAAYDADHLRAFIASNLKATAQIKVNPTRSSVPTIDWRMYKERHQIECFFNKLKRYRRIALRCEKTLTAFMGLR
SISHAL
>Q9RC76_BACHD/126-372 transposon family T11 Pfam:PF01609
ANQELLDKVHELRESKALIIDLDSTHADTYGQQEFTAYNTHYGTVGFHPLVAFDGITGDFLKAQLRPGNVYTSNGVVDFV
EPLIKHYNEKFPATTPFLRGDSGFAVPALYDLCERESVYYVIRLKSNAILQRMADECHPATVPSDVTKSECYYEEIDYQA
KSWSKPRKVIIQSVRPAGELLFTYSFFVTSLGDIFSPKGIVRTYQKRGTMENYIKEAKNGFYLDKMSSHSFQVNEVKMMV
SLLAYNL
>Q7AY40_LACDL/177-277 transposon family T12 Pfam:PF01610
YLAIDEFKLHDGHKYATAIIDWETGYILYLAHGKKKAVVFEFMDHVADEWMSKVEAVACDMNSDFEEAFKGRYPKLDIVY
DRFHIIKNFNDKVVSEIRKDE
>Q62JG4_BURMA/156-256 transposon family T12 Pfam:PF01610
YLAMDEFALHKGHRYATVVVDPIGRQVLWVGPGRSRETARAFFEQLPEGVAERIEAVAIDMTTAYELEIKEQCPQAEIVF
DLYHVVAKYGREVIDRVRVDQ
>Q98AL0_RHILO/154-248 transposon family T12 Pfam:PF01610
VVGIDDWAWRKGQRYGTIICDLERNRVLDLLPDRNANTVASWLKRHPGIEVIARDRAGVYADGARRGAPDATQVADRWHL
LQNLGEALRLALGRH
>O68604_BRELN/163-272 transposon family T12 Pfam:PF01610
VIGVDEHVWRHTRRGDKYVTVIIDLTPISQGTGPARLLDMVPGRSKQVFKQWLASRPKDWRDGIEVVAMDGFSGFKTAAA
EELPDAVEVMDPFHVVKLAGDALDDVRRRV
>Q75TY6_BACHD/149-245 transposon family T12 Pfam:PF01610
RIAIDDYKGDTNAGKYQVIIADAETRKPLDILPDRKADTLKRYLQEKGYHVKTVVMDLSYSFKSAVQRALDHPLIIGDPF
HFCRSIYWALEGVRRRV
>Q8GI64_9MICO/157-256 transposon family T12 Pfam:PF01610
RIGIDEISYKKGHRYLTIVVDHDTGRLVWAAPGRDKPTLARFFEALGPDRCAAITHVSADGADWIAAVVAQRCPNAVRCA
DPFHIVKWATDALDEVRRQA
>Q9X5K3_RHOER/140-413 transposon family T11 Pfam:PF01609
ARKAAWSYAGEHAPDHHIDPQQPLVVDLDATLVTAHSEKENTAPNFKRGFGFHPLLAFVDHGEHGTGEPLSFLLRPGNSG
SNTAADHIAVTRQALAQLPFRTSGAVGKKVLIRTDGAGGTHAFLEYLTARKLSYSVGFTLTDAMAEAIDEIPEDLWISAL
DSSGGVRDGAWVAELTGLVHLSGWPAGMRLIVRKERPHPGAQLRLTDRNGLRLTAFVTNTVVGSLQTLELRHRRRARCED
RIRTAKDTGLSNLPLYGFAHNEIWLAIVALASEL
>Q56758_XANAU/138-381 transposon family T11 Pfam:PF01609
LNGQWIDRFHDRNGLKYIVLDMDSSVSPTHGDQEGSAWNGHFDCSCYHPNFLFNQFGMLERCALRHGNVHSADGWRDVLD
PVIARYAERDLGGRFFRADAAYAIPAIYERLEEARFFYAIRLPANAVLKDKIAHRLTRPVGRPSLTKVKRFFEEFEYQAA
SWDKERRVIAKIEWHPGELFPRVGFIVTNLPMEPDWVVRFYNQRGTAEQHIKEGKYAFRWTRLSCRKFRDNEVRLQLHAL
AYNL
>O07439_MYCUL/54-310 transposon family T11 Pfam:PF01609
LDPADLNARMGSYFTAHVASSDPSGLVPIELDGKNAAWCFTRQSDTTHLVSVFAHRARLVLGQLAVAEKSNEIPCVRALL
TLLPDNLRWLVTVDAMHTQVVTAKLICATLKSHYLMIVKSNQAKILARITALPWAEVPAAATDDSRGHGRVKTRTLQIIT
AARGIGFPYAKQIIRITRERLITATDQRSVEVVYAICSLPFEHARPTAIMTWMRQHCGIENSLHWIRDVTFDEDRHRLHT
GNGAQVLATRRNTAINL
>Q6V7R1_9CAUD/148-243 transposon family T12 Pfam:PF01610
WLGIDETQIDGKLRCIITDVVNRVPIDMLPDRDKPLVTAWLHQFKERGGVKGLAIDMWKPYKDAAQSVFPGLPVVVDKFH
LVRMANRAMDDIRITL
>Q5L1V9_GEOKA/154-252 transposon family T12 Pfam:PF01610
VLSLDEIAVKKGHQYETVLMDAKAGSVMGMHADRQCDSALHLLSQNVLSKERVQTVILDMWEPYHKAVRALFPSASIVID
KYHVIQKVTQALDQARKEF
>gi|114575607|ref|XP_001137635.1| (piggyBac) piggyBac transposase [Pan troglodytes]
SPVGLFELFFDEGTINFIVNETNRYAWQKNVNLSLTAQELKCVLGILILSGYISYPRRRMFWETSPDSHHHLVADAIRRD
RFELIFSYLHFADNNELDASDRFAKVRPLIIRMNCNFQKHAPLEEFYSFGESMCEYFGHRGSKQLHRGKPVRLGYKIWCG
TTSRGYLVWFEPSQGTLFTKPDRSLDLGGSMVIKFVDALQERGFLPYHIFFDKVFTSVKLMSILRKKGVKATGTVREYRT
DRCPLKDPKELKKMKRGSFDYKVDESEEIIVCRWHDSSVVNICSNAVGIEPVRLTSRHSGAAKTRTQVHQPSLVKLYQEK
VGGVGRMDQNIAKYKVKIRGMKWYSSFIGYVIDAALNNAWQLHRICCQDAQVDLLAFRRYIACVYLE
>gi|149607986|ref|XP_001521454.1| (piggyBac) piggyBac transposase [Ornithorhynchus anatinus]
RAVDFFQLFVPDNVLKNMAVQTNMYAKKFQERFGSDGAWAEVTLPEMKAFLGYVISTSIYHCESVLSIWSSGFYSNKSIA
LVMTQARFEKILKYFHVVAFRSSQTSHGLYKIQPFLDSLQNGFDSAFRPSQTQVLHEPLIDEDPVFIATCTERELRKRKK
RKFSLWVRQCSATGFISQIYVHLKEGAGADGLDALKNKPQLHSLVAKSLCQNAAGKNYIIFTGPSITSLTLFEEFEKQGI
YCCGLLSSRKSDCTGLPLSMLDSPEAPQARGQYRIKMKGNMSLICWYNKGHFRFLTNAYSPTQRGVIIKRKSGEIPCPLA
VEAFAAHLSYICKYDDKYSKYFISHKPNKTWQQVFWFAVSIAINNAYILYKMSDAYHVQRFSRAQFGERLVRELLG
>gi|115929068|ref|XP_001181034.1| (piggyBac) piggyBac transposase [Strongylocentrotus purpuratus]
KPVDFFYRFFPEDLFTMLAEQTNLYARQTIQRLGVLQQHFRLKQVDRNNNRRDEGIHCTADLHGACHQTSDTYVLGGELA
DRNTGFQQSDESYQLINSLLHFVDNEDRVPRGQPGHNVLFKVQPIIDRVRPTYQEAFAPGRDLSVDESLAAFKGRLSFKQ
YLPMKPTKWGIKFWVVTDSSCGFCLDWSVYTGKNDQQDRGGDGLSTRVVKDLTRRYAGSGRHVYMDNFYSSPELYEFLHN
ENLGACGTVRLSRRGIPPIMREASQQARKGEPPKFFRKGDLMGVTWHDTKRVSVLSTIHGTGCTHKEIRDKRSETGRRQV
QKPIAVEGYNKAMGGVDLLDQRMAYYKYPHKHLKWYMVVYHFMVEVALVNAFLAYRIATKDMKRSTRSFRLSVINSLLD
>PITG_15386 (TyrRecombinase_Crypton) /1623
MGLEELQPGNTLRAKATAVAAFSKFLKGEDVEEEYVKKCIEEDESGKSFVCVMDKFGMYIAFSEGKKGKLLARNTAMQYY
RQAKIWLLEQFPQHRASIESRLLKMGKTQDNFCLKRDGDAALLCLLWYLFGRASDLAMIKKRNISIDAASVFFLRLVRVK
TSEEQGLSLFPDADFATCPLLAVALALSVQAAPCPALIGNLPDQVQQTPTTLSPDVPLVKLLNAPPATSGLATPAPPPPR
TAAAPTIYAHVNRVLDRVAPAAGVSAALTSHSFRRGGAQHANGCEKMTARWIFDRGSWNLSTTNKGFNYIFTTNLSSFDA
DTLDAIAEFQRVLFAACYQLETESFNINRKVLDVLAACVVRHYPVVKGLNPDSPAVQRLETCVTQAGRTLPDLLAWSTHL
AG
>gi|109080521|ref|XP_001085889.1| (piggyBac) piggyBac transposase [Macaca mulatta]
DPLQYFELFFTEELVSKITRETNAQAALLASKPPGPKGFSRMDKWKDTDNDELKVFFAVMLLQGIVQKPELEMFCLGQGY
CVFLDNFNISPMLFRELHQNRTDAVGTAHLNRKQIPNDLKKRIAKGTTVARFCGELMALKWCDEKEVTMLSTFHNDTMIE
VNNRNGKKTKKPRVIVDYNENMGAVDSADQMLTSYPSERKRHKVWYKKFFHHLLHITVLNSYILFKKDNPEHTMSHINFR
LALIERMLE
>gi|123227345|emb|CAI13996.2| (piggyBac) piggyBac transposable element derived 5 [Homo sapiens]
SAVDFFQLFVPDNVLKNMVVQTNMYAKKFQERFGSDGAWVEVTLTEMKAFLGYMISTSISHCESVLSIWSGGFYSNRSLA
LVMSQARFEKILKYFHVVAFRSSQTTHGLYKVQPFLDSLQNSFDSAFRPSQTQVLHEPLIDEDPVFIATCTERELRKRKK
RKFSLWVRQCSSTGFIIQIYVHLKEGGGPDGLDALKNKPQLHSMVARSLCRNAAGKNYIIFTGPSITSLTLFEEFEKQGI
YCCGLLRARKSDCTGLPLSMLTNPATPPARGQYQIKMKGNMSLICWYNKGHFRFLTNAYSPVQQGVIIKRKSGEIPCPLA
VEAFAAHLSYICRYDDKYSKYFISHKPNKTWQQVFWFAISIAINNAYILYKMSDAYHVKRYSRAQFGERLVRELLG
>7000001773487449 (helitron ORF) [Phytophthora infestans]
MVRSKRKRTREELEEALRENERINATPTQEEKEARKRRLNKRRRKRCDLNKALQALSVNQEVSETMEVTEGQTIALEEQE
EKTEESNPAVYQRRFAAQMEAAYQDGATGVALFTVPVTPQATVQEAVPVSAAQRARERRANRTLSQADRDRTRDAQRART
RRANMSLSQRNIARQKGAERQRVRRARLREEQLQELREQDRAYHEERRAELPSQDREVERELNRQQHTDRRARQTAEEHQ
QELERVRTRRQCVRHGHALISLADFDASMITGDHVVNGRHKLPATTVCPVCNAWKWPGESTISCCLAGRVKLPPLHPAPP
KLLQLYGDPEFRRQIRAYNQAFAFTSIGASCSNRSFQNVHQDESVAGTHGVYTYRIQGAMGHYLGSLLPHIDRRTGARVA
PKFAQIYIVDPDMQRRAERRLGIFADLDRDALLDIEKMMAEHNPLAQRFLHFGQQVRQQNTETPVDLVFRLHDNSSRPRT
HNRPTVSEVAATLIEDGNLAQPRDLLLFTRDQRLLRLYETHADYDPLQYPLLLPYGEKGWTYTDEFANGAEYRNKKAMSL
REHVAFRLHQKVDDQSALHQGGRLFQQWCVDQRAKCEQEQLRWVADNQKTLRADQYRGVQDALLNEDTLALAEGEVLLSE
YDRVQNRLVHPDQDGGNRGRPTHFLNQVGKRIILPASHLGSPRSMYKSYQDSMAIVREYGRPDVFLTETCNPKWDEILEA
IPSDIQTAQDRPDIVARVWQQKLQATLDDLNQGVLGRVRARIYVVEFQKRGLPHAHVLIILADEDKPRTREIVDKMVCAE
IPDKDTNPQLYETVMAYMLHGPCGPANPFCACMKDGKCTKGYPKPLAEVTQANANGYPVYRRRRRQEGVLKFKGREYDNA
TINQWVVPYNPYLSQKYNCHINVEVCTDITAVKYLYKYVYKGPDMAILTVEEVRGGQQSARREPNEILRFLSARYISPVE
ACMRLLDFTIQGKTHAVTQLTVHLESGQTVCFRETENPEAVLERGSHTMLTRFFELCASEEPQNHIARTMLYQDIPKEFC
WKAPEKGQPKRWVRRKQYQAAVGRMIHVSPRDMERFYLRLLLCQRRGPTSFEDLRTVNGIVCPTFQIAAREAGYLENDNE
WVSCLREAAEFQMPYQLRQLFVIILVYSAPANVGVLWDRFFADLSQDFARKHQALMDPFKSALIEFETLMSIQELLQASG
YAVADFDELPQLGSFPTLIREALRQKGLLRRELTGYDASSLEAIVSTEDQLNESQRVAYDQIIEAVECPDEGKKFFFVDG
PGGTGKSTLLRNILAKVRLSGKIAIAVASSGIASLLLMGGRTAHSTFKIPLKLNESSTCGIRKNSHIQELIKHASLIIWD
EAPMAHRHAFEAVDRTLRDILDNDTEPFGGKVFVLSGDFRQILPVVKNGTPVETIDACFKSSRLWPQFQTFRLTENMRVR
TADTADTAEEMAAFSEFLLQVGEGRHDVNPSLGNDYMKIPRDMLIENPPVPEDEDQEIRPGVIPRGMDRIIDEMYGEINN
PEVATDEYFANRTILTTTNAIVHRINEAVTDRLTGQAREYMSSDSVQDDGDGNFFEQEVLHSMNISGMPPHKLTLKVGMP
IMMMRNLNPDLGLCNGTRLRIVALKPHVIHATIMTGERQGQHVLIPRIVFISDGDIRSFPFHLRRKQFPVQPAFAMTINK
AQGQTVQYLGLYLATPCFSHGQLYVAMSRVTSRSRFKALVEYPKLEEEDGVYAQNIVYRQIFGSE
>gi|17537113|ref|NP_493834.1| (helitron ORF) Y46B2A.2 [Caenorhabditis elegans]
MSEEEKAEMKYKKRIWMKKKRNEVAKTHDTSSVANPNYLGSMRCVCKNCNARFFQGEVSSSNDHINMCCNFGLTTTLQDR
FSNYPDELRHLLLDDSSHARNFQKNIRQFNSSFAMASMGAQLDVPRGRGPYCFKIHGQVYHFAGPLHPDPGQRPAFGQIY
ILDTDQATDERLGNPANADCDPAVMAELSSLLLRTNPYAQAYKMMAEVEEKENSEAAKEVRHPGCVRLIFDISTTKDPRR
YNLPQANEVAVVFVGEDDDVPTTRSLAVHPRGGGLKTIRDIDRICDPLTYPVLFPNGTDGWHPDLEKRPSEKKQGRITQK
MYYSYLLMERSGVFNPLHHGRALFQQFAVDSWVKIEQNRLNYHRTHQVDLKAANYNAVQDYIAGDTDVPGRRIVLPSSFP
GSPRAMVQNFQDAMAIVSKFGKPDIFLTFTCNPAWTEISENLGPRQSASDRPDLIARVFKLKVDALFDDLLNRDILGHVA
AYISVFEWQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQNPHSPCMVDGHCS
KRYPKDFHPSTTLNVDGYPGYRRRDDGRYVDYGTQHLDNRRVVPYNKRLLLRYNAHMNVEICGFIEAVKYLFKYVYKGHD
RAALNIIQNVRGDGNVVDEIREHLDARYVCAPEAIHHILGFKLEKKSDTIYRLAVHLEGFQTIYFRASVTTQQLESSSQT
DTTLTAWFKINQKSKDIAESGNIPSTFVDSRQFFYMDMPTHFTFVKKDGWKVRGRGTRQIGRMYTVPPYETERYALRILL
LNIKGATSFEDLRTVLDENNVPVVYATYVEAAKAQGLLNDDSEYLKSLKEWAGCSVPAALRSMFVAIILFNEVHDLNALW
DAVKVGKRFDVTKPSINPPPIDLDTVNPAQCASEGNRLLATLNDQQKRAADQILAALDDASLPRLFYLDGPGGSGKTYLY
ITLYNICVGRGLKVACTAWTGIAANLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQELAENDVFIWDEASMVPKTALD
TVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLWTEFQILHLISNMRVTSGDSDWIQFLLN
VGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVIDPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIV
EHQADTMHYPTEFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLGCRFATGERKGHFTIIP
RIDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIVKFSSNIVTNIV
FNEVL
>model.supercont1.13.10.1 (piggyBac) piggyBac transposase [P. infestans]
TVSGVLFYFMQPRLWEDIAEASNEYFGEKIDERVEGQYTKQEQREKKIPRFKKSTRDAIKAVLLSTPPITARELCVFVKL
LFARTIAPNKEKLEKHWKTTDEGGIPRGRFGIFMSRDRFMHISRNLHFSSNNDPRAATDRAWKLRPVIDALQQQFKAGYI
PPPVMAFDEAMLPSRSTFNRMRVYMKDKPHKWGTKLFMLCCSASAYCLRFEVYCGKWQTDRSSSSKDINCGPAAVIRNLR
QVFGARGTIEKRLVVTDRFYTSPTLSMQLLAMGFYSIGTVMTNRRGFCKEIIVKKKKRPAHVHRGTYAVAESTLVPSMKA
VCWWDNRPVHLLCAGGSTEQDRVVRRAKSGEQVEVACPRVLKHYQTFMGGVDVHDQLRLQRYSLQLALKYKKYYKSLFLG
FIDLATVNAFIVYNRRRAIDGKPKLSHVKFLKQLHLELTP
>gi|73952616|ref|XP_850130.1| (piggyBac) piggyBac transposase [Canis familiaris]
SAMDFFQLFVPDNVLKNMVVQTNMYAKKFQERFGSDGAWAEVTLTEMKAFLGYMISTSISHCESVLSIWSGGFYSNRSLA
LVMSQARFEKILKYFHVVAFRSSQTTHGLYKVQPFLDSLQNGFDSAFRPSQTQVLHEPLIDEDPVFIATCTERELRKRKK
RKFSLWVRQCSSTGFIIQIYVHLKEGGGPDGLDALKNKPQLHSMVARSLCRNAAGKNYIIFTGPSITSLTLFEELEKQEI
YCCGLLSSRKSDCTGLPPSMLSNPATAPARGQHRIKMKGNMSLICWYNKGHFRFLTNAYSPVQQGVIIKRKSGEIPCPLA
VEAFAAHLSYICKYDDKYSKYFISHKPNKTWQQVFWFAISIAINNAYILYKMSDAYHVKRYSRAQFGERLVRELLG
>gi|145526811|ref|XP_001449211.1| (piggyBac) [Paramecium tetraurelia strain d4-2]
SEYDAFRLFFDNDIYNTIIKHTRERYQQKVEEQIYSYIHGMVHMGIRAKKPTLMQWEFTEYELEAYFAVQIFFGIVRLSN
QRDYWKSDRYAHWVTQRMSSIVSYEKFKTIRNCLNISGAEALKLKGRDPIWKIRDFLNQMNMRFAKYYYPGEFITIDEGM
IPFAGKVQFKVYNPDKPTKWGIKEYLLCDASNTYTFQLRLYHGQTMWNNDFKQTMFVNEEDTQHRTMELVLQMCKDYEHK
AHKVVMDNYYSSWMLFRELRNRGIGAVGTIRHNRTGLTKKDLTSKHFQQIYNQYHYAYSNELMLMYFQGTSEKEIALISN
FLDNSLNEQHMWDISKQHYYVPHLKAPYMMYVYNKYKGGVDRRNSYVVKYRSRFPAKKWWQSVFERLFETAILNAYLIFR
SYNPESGQMRDFRINLMYQFAE
>gi|146291348|ref|YP_001181772.1| (TyrRecombinase_Crypton) phage integrase family protein [Shewanella putrefaciens CN-32]
MSKPLAHLTDADKLRIREITQAKLKHFLENGHRTRRANTWRALMSRWAKFESWCLTNNLTPLPATPEVVATFIEYHQASS
YTTLSQYAWAINSFHVECGLLSPVSSKTVQDKQNEIRIVKLESGGLAQEQATPFRLHHLQMLIESYGESERLLDKRNLAL
LNIAYESLLRESELLRIKVGHLKSTFEGDYVLSVPYTKTNDSGEEEVVNITPLGFKLIQRYIQGAGLTKEDYLFQPIGRS
NKVSVQAKPMNTRTVDRVFLWAFESLAIDLHSAWSGHSARIGAAQDLLAAGYSIAQIQENGRWKSPMMVLRYGKDIKAKE
SAMAKMLAERR
>Pi_model.supercont1.21.6.1 1480 novel transposase Pi-A IRs plus 9 bp TSD
MREMFYRFSEVMLIDATHGTNSSKYKIFSFMVHDAFGTGQFVQHAVLQNERAATLMTAIEEFKKNTPSWTKLQCVVIDKD
FTEMAVIKAAFPGVRILLCQFHVLKYLREQLASSEYGLSPWQKAQLRSVISLMVYATTEREFFKHREYMRLILSIGMESS
RRETSADRGGSFARAAVTPRADGAQLGTDGNLTISNHLDGPADDAETHPFEAYFHKNWDNCKEMWAAYERQSAVTMGNNT
NNRLESSWKHLKDTMNSFMGLDECVASLICYQVRVERAFDAKATKVGMAHNPKYDREMSLVANLVSRHACELIFDQYVYV
MGSTAHYNFYEAVSGIIFIKNETEVDEALDEPSVEYSVNKKNWECSCLFMSTRRLPCRHVFYIRKAMHMEVVIPTQLLPS
RWLLSSLRSEVPVDELPSAPSGVGQIVHYKEKPWDSNRKFSEAQQVATKISETMSEMGMPQYRAALSVLREVARRFKHGD
>Pi_model.supercont1.5.9.1 1593 (mutator-like) mutator-like transposase [Phytophthora infestans]
LVESRKTLREDHNQSANCTLCATVVPHPMRYKLFSCVSKACKLVYPGVKCKWRAKVTTCTRSMLSSAYSYGEHLSGALDA
PTRSLTSAHKQYCQLMTGEGLKPLRIRNGLRVKFSLSTENMPSLSTVQNFVNNYRKTKLGSHDRVKNITAMVREKVNPSW
TNDENDPVTFTWHCDAEGNADPGNGTDKKPFVVGVTTKSLLRRLDRSPESFIFHIDATYKLSKKGYPVLVIGISDICRTF
HLVGFCVVSQTTEEVVTAALSAFNRLYTQVTGKSICLAYVMGDADDGQFNALQAVFGSMSNFKFLMCFYHVLLNVNKRLR
CFPDNVAAGIRKDIYNMHFSETKEEFLRLADVSIKRWAGLSDAPGFVDYFTKEWFNKRFFLWQCCWTPPGFATTNNPVEQ
FNRHLKQHYSLHVKLNMGTLLRLLFQCATSESVTGKTFRTTAEHSSVLATRMRELSRDNLLVENLEFHYRDGGIVAVQAK
PAKRVFVPARRRTEEYLAVTAQLGANYARMEIGGQPPIGWPVDVVKRTCPCKYWVKFAYCVHLLFAMQRSALVDSMGHDI
LMTRAV
>Pi_copia_polyp (Copia) polyprotein [Phytophthora infestans]
MGFIVITTLDLRQETEAVSLTAQDAEHDPVWTVDSGCTRHVTSNPKWFEKLIPSAGKSITVGGNHQIPIKGTGDVKMTIK
DTKGKEREISLANVLYAPQLKFNLLFVRQAVEDDFKINFPNAKKCVLFFASRTKFEAKIGEGTRLYQFQAIPATSSQVAH
VATSGKPDNVLLWHKRMGHPNFRIMQDLAKANTVMDMGLKDFDSKKDYFCSSCTYAKAHRNPFNKRTVERAKFPLEKVHS
DMAGPLPVPTLSGCQYFLTFIDDYSRYMFIYIIKRKSELYECYEDFRKKAQNVFRADVGELQFNENIHDEEVRHLQSDNA
REYEKLGKMIFQKYNTHALFTNAYTPQQNGVAERRMRTLLERTRAFLIDGNLPQVLWGECVKHVADLLNITPSSVTDKVT
PYEKWFKRKPSAHYSKVFGCTAYAHIPEIHRTKLEPRAKKCMYLGLPSNKKGYRLLDTKENRVIYSRDVVFREDEFPHLE
FLNTPAISVQNGPAPTLSPSLPTPQLLPPIASLLKRSVNALAAEVVVKMKKVKHKTNAQNEDEHSCLLDDPLDINERKEH
LTHIYALLAIRHISEPKTFLKSQKLPEAQHWEKAAICEYKSLIDNKTWVLTKLPIGRRALQCRWVFVVKYNGDGSIERYK
ARLVIKGFLQKYGVDYDEIFSPVIRMEVLRLLLTIAALLDLEIHQMDVKTAFLNGYLDEEIYMLQPEGFTVRGKEHLVCK
LLKSLYGLKQGTSDLVSYLCSFLLTMKFHKLIKDQCVFIGVVDGATCYILVYVDDLLIIATTLDIINNIKNALKQRFKMS
DLGEAQYILGWSIIRNRTDRTIFIHQEKYATKVLDRFSHLDAHPVGTPADPSVKLTEAMCPQTPEEKHEMKAIPYREAVG
SFMYLMMGTRPDLAYFLREVSQFLVNPGKPHWNAVKRGLKYLNGTRNLGITLGGKQNLEQYKSKHYLTAYSDADYANCPD
TRRSVGGYIAYMCGSPISWQSRKHHTVVLSTTEAEYIALCNCMQEVIFLKLLLVELKHESSHAITLFEDNQSCIKLSYNP
ELHGRSKHIDIRYHFVQEKVERKEFEIMYCNTKEMVADIFTKALSKPLFINLRGSLCKTHIQK
>Q9SN25_ARATH/612-703 (hAT) hAT dimerisation domain, hATC (PF05699)
DGNHLFLELKVLKELLPTEITKAIEVLNFLKKFEGCYPNTWIAFRVMLTVPVSVASAERSFSKLKLIKSYSRSTMSEERL
NALAILSIERDL
>Pi_DIRS1_tyr  tyr-recombinase-like protein for DIRS1-like element [Phytophthora infestans]
VTDVTYVRYDRYLGKWKRWTSRRGLSPWLHGMTLTDMVKHISDFVLHGFQFGFGSGGPIRSASIMAVLHGVRHFFAASGC
EFPIEHPHIRMLLKGISRLDTPRRRKAPVSIHLLEACFRGLAMEHPRGQALWGVVCLAFFFLLRRSEIVAIQGGSFKWFA
LRAQDIVTTNQGGAPTTRMLTRSGHQFLCPVFGALILHQARRNLPASIPAAVYISRSGQPACVSTEDVSEAIKGAAARTG
EDPRRFSSHSLRAGGATHMYRSGTDALTIQFHGRWVSDA
>Pi_model.supercont1.29.3.1 1583 (mutator-like) mutator-like transposase [Phytophthora infestans]
LLQGMKTWKTVKSQLMPCTACTSGDAHTMRYKLLRCACKHCTDAVPYLACTWRMKVLVCQDTDTVDMHELGDHHSRARTP
SRSCITPRCREFIKELARENLMPVRIRHALGRKFDLPPAELPSLREVQNIVHHFRRTRLGGNDKRKAIVESVRASAFSGR
EGDHDPFTFTSAYDTNSLPEVGNGSDARPFLVGMTTKALLRNAARNSGACVLHLDATFKLNSVGYPVLVCGITDASRAFH
LVALFITSQLQYKHFVAALVALRCVYARVNGAEWRVKFVLGDADKAQHKAFRSVFADSSFTYLMCFYHVVAKLRERTRGF
SSDMSALVYKGIYNLHFAQSDAEYVDQKAAMLKEWAGHADLAAFTMYVKAQWLEDNFANWQCFLTPSGYATTSNPVEQFN
RVLKRDYTHHRQLKMGMLLAQLLACCGHRSMALPQFSLVSTCSTTLQTRTRGLRRRGLLSENIVTRSSIDFLLGDADPDL
VHVRALPPARTFVPELNRAREDMAISAQFGVHYARMEVEGQPRTGWPVDLRTAYCPCKYHFKMGYCSHLLFAQQSRSVVD
EAGEEILVNRKR
>gi|158318020|ref|YP_001510528.1| (TyrRecombinase_Crypton) integrase family protein [Frankia sp. EAN1pec]
MIDPAGTLAPVPSVDLDIVGARDASVSATTARMIDDATAANTKRAYARQWSTFTAWCSQEGRTMLPCSDATLAEYAAQLV
TAGAGPATVEQAIATIRRVHRDQAATPPDTRAARLVLRTARRERADAGQATRQAPPAALDQLRAMLAACDTSTRGVRDRA
LLLLGFAMMGRRSELAALDLADIREVDEGLIVVVRRSKTDQDGRGAEVAVPYGSRPDSCPVRAVRAWRGWLASIGITEGR
LFRSVTRHGHIGEAMSGDGIRRAVRAAAVRAGLPNADVFSAHSLRAGGATAAAKAGAPVAAIARQGRWSPTSPVVHSYIR
AADRWRDNPMASVGL
>gi|149911543|ref|ZP_01900157.1| (TyrRecombinase_Crypton) hypothetical protein PE36_11697 [Moritella sp. PE36]
MPKALINISNNSIVSSKHLTEEHIENLVRFSDRKEQLEENTLKSLHYHVSKFNDYCLTHNVIPLPLQDATILEAFLIQEN
ERGCKAQTLRIYAWAVSKIHSLAGLEIPYFKTIITARLKIISKQEVKRGIKRKQAVAFSYDHLKFVNEQLDINSLLSIRN
ALLLNICYDGLLRESEACNLFVDQIQKVNGLYNINITNSKTDKSLDGSIVHLSKFTSKLLPLYLQKVSAHNGQFLFKRIT
PRGGKLEKLKPSDHSPNPHDKPISTKTVELIFANTWHSITDYNQSVSFDLHVDLPERPFSGHSARVGASCDLVSAGYDDS
LVMRAGRWKTLRMVELYTRGVNNKFATVREFRERLDTMTDI
>gi|94498350|ref|ZP_01304909.1| (TyrRecombinase_Crypton) Integrase-like protein [Sphingomonas sp. SKA58]
MSAHEAGCVPATPEVVADYLDARAGQGAKPASLGRYKASIARIHQLLDLKDPTQADLVKLRLRAIRREKGTAQAQARPLR
FKGPVQDVERDSPRGLNVRALLDACADDLPGLRDRALLSVAYDTGLRASELVAIKVDDMLEALDPEARLLAIVRSKGDQE
GEGATAYLSPRSVRAVAAWREAAGIEAGPLFRRVQVRRYKARAAVKGRSIDSVSGRETWDLRKTLSKPAVKALVEYDVGN
VALHPGSIGPIWRAIIQRAFDRGALGDLTADDLARLLKGISAHSTRVGLNQDLFVAGEDLAGIMDALRWKSPRMPLAYNR
NLAAEAGAVGRLTRKLD
>Pi_model.supercont1.2.14.1 1590 (mutator-like) mutator-like transposase [Phytophthora infestans]
LFSQLKSHSTGKSNIMACTACGGYSEHSMRYKLLQCESSTCSELTCSWRGKVLVCLDTERYCIYELGEHFTYTTSLKRLK
LSIKQKEYCRGLAEERLRPLRIRHAMARKFSLTAGDVPPLDKVQNFCNYFARTELNNHDRLDDITQWAHRRAFVGNEGEN
ETFTFGWRLDETGKPIVGDGSDEDPFIVGLSTKTMVRRLDLPTDSYILHLDATFKLNTSDYPLIVVGISDRGRSFHLVAV
FIVSQRLQPIYEACLASLCHIFTWLTQKRFVPHFVMGDAEKAQRNAAMSVFSHDPNLQYLMCFFHVMTNVEKKLKRFSSH
VAGALVRGLYDLHFARDQLTFSWMRDQLLRNWRCYPELSEFCTYLNDQWLTGHFTLWQCYLTPSGFATTNNPVEQFNRVL
KRDYTLRRRLKMGMLLKELNDCCSDESSRIRVFRTRIEAAPTLARRVNELVREKLLERNIEADSAVGDPGVMHVVAYQAK
RIVVEGAKRSTEEQIAVSAQMGINYARMEVESEPPSGWPVQLRLQWCPCNYCYKFGTCVHLLFAMRATDRLDGAGQAGSS
SRRA
>Pi_model.supercont1.4.152.1 1361 (hAT) hAT family transposase [Phytophthora infestans]
ICDVFFKPIRDENDDCMGFYRCRCGVQRKQDAKRGYTNLINHIYSQHPDYETTLDSFQGGNNGTLLSFVDKKSANIFGWL
EWIVDANLPLSFCENSLTRRYTTLKPICDDTLVHYMAAGLNQSAKLRHKTPLRPVIRQKTRWSSTFSMVERYFKLKPFLD
SADDDLAAYMPSPLEERQLRSTLDDLKDFESVSKKLQEEGNLTLADVRALFDSLMEKAPSLGSYLAPQAPIVKFPIFEMA
CVQVLNGETRLLTRNSVAALAQFAAPALIQPQHAAANKENKKLSFAEQALKKRKVDAQQQPRYELVQYIPPTSNIAERFF
SQAGIVLSPQRQAMAPAQLENILFLKTNRRYWNVAMVQMVG
>Gypsy-17_ST#LTR/Gypsy 40-4806 After removal of possibly in-silico duplication 3874-4569, 4570-5265 [Solanum tuberosum]
MASSTALQVLQNDVRAVRTQLAVFVDDVSKRFETVELQQSQFHTHFNEMRETNKKLELIISHMGVQSIPSSLTTPPTDST
PLTTPIGTQGFQQRVETGKSPMVGSHPSFNQSVYEVGQGFTFPPAPLFSSPPLFRNPAYSSAPPILPNPIIHCPSTPESS
NPQRNLKPKINFPDFDGNNPRSWLRKCEKFFELYNISEQEKLSYASVHLGERVDIWFDSYVVNHRGRITWQRFCTEVCRR
FGNIRPQDIVDEFNKLMQVGTVDQYQERFEELTSYMTIINPLLNETHYVASFISGLKIELKPLVKLASPTTVLDAYEVAK
LYEESFRALLPFVSARTPPNTVQRPLAITYPRNAQANPIKPLAGPSYQQPLKLTYPNQRPQGRAPLKPNTLPPNLEILRE
QGLCYRCKERYYPGHQCKQITLHAIEGEATVEEGEQPDVFLDVPETLEEETEEQAEVSLNALLGLSSANGKISTIKIVGY
AGKLPMTILIDSGSTHSFIDPQIVKLLRLPVRPMSRPMRVLVANGQLMSFECECPSFGWKMQNEQFNFTLKLMKVGGCDM
ILGMDWIDMVAPIILHTRPHRLSFMTAERMVTLYGITDDPEVISVDTKALKRMLQCGTCEVVAELAWIHEETINEQKEMH
AKITRLLEQYEEVFQEPKELPPTRNCDHVINLIPGAQPFNLRPYRYSYDQKNAIESIISDMLKVATVTPSQSPFASPALL
VKKKDSTWRLCVDYRRLNNLTVKNKYPIPMIDDLLDELFGATVFSKIDLRAGYHQVRMKSGEEYKTAFRTHHGLWEFRVM
PFGLTNAPATFQSLMNAVFKDQTRKFILVFFDDILIYSKTMEAHVHHLDTVLRLLKINNLFAKFNKCAFGQTQVEYLGHI
ISGDGVSTDHSKVVAMKEWPNPRTVKELRGFLGLTGYYRKFIKGYALISKPLTNLLKKGEFQWNPEAEIAFDRLKMAMTS
APVLALPDFTKPFVLEVDACNTGIGAVLMQDKRPVAFLSQSLSKKHQGLSTYEKELIALLLTVEKWRHYLHPQHFIVKTD
HFSLKFLQDQKITTALQHKGLTKLMRLSFEIQYKKGVENVVADALSRKADTKAVEDTEQCMVISQLKPKWMEEILESYEG
DPEVLKAITALSTNGDAGKDISLQQGILRFKGKAWIGNNGLFRQQLISTIHNSGLGGHSGIWATYQRLKAVFYWPTMLEQ
VKVIVQECEVCQRCKDEQVAYPGLLQPLPVPEKMWEHISMDFIEGLPKSEGQDVILVIVDRYSKYAHFIPLSHPFTASQV
ARVFLDTIYKLHGLPKSIVSDRDKVFLSNFWKELFKNLQVQLLFSSAYHPQTDGQTERLNRCLENYLRCMSGHKPNEWNK
WLSMAEYWYNSNYHSSLKMTPFKVVYGYEPPQLSFELIAQSKVDAIDQVLKERQIMSKVLKENLAMAQNRMKRNADKRRT
EREFEEGDWVFLKLQPYKQTSLAVRKSLKLASKFYGPYQIVQKLGPVAYRLKLPTTAKIHPVFHISQLKRKVGGQKIPSI
DPPMCSPEGQPLVEPVAVLDRRMVKKGNKAAVQILVQWANLLPEEATWEDYQFIRSQFPNFVDLEDKF
>Copia-72_BRa#LTR/Copia 102-4361 via tfasty with Copia-45_BRa, 87.6% SW:5258, 2 frameshifts and 1 stopcodon. [Brassica rapa]
MSTSPASSHETIMVSGTTSLLNLNMTNVTKLTATNFLMWSRQVLALLDGYDLAGYVDGSAIIPPATNDTDSVLTANPAYT
IWKRQDKLIYSALLGAITVSIQPILSTATTSAQIWEILSATYAKPSRGHIKQLREKIKTWEKGTKTIDVYVQGLTTRFDQ
VALLGKPYDLKDQIEHILEGLQEEYKKLVDQIESRDSTPTVAELHEKLLNHEAKLQSKTSTIIPITANAISHRSSSGSIN
NRNNYNGNRNNTNNNRNPQPWQQNNNTYSRSDQPSRGYQGRCQICGVHGHNTRRCPQLQSGNMQNNSSMRSSSPPPNFWQ
PRANFVASQSYNPNNWIMDSGATHHLTTDLNNLALHQPYTGGEEVTIADGSALPISHTGTTYLKTPSTSFTWNDVLYVPN
LHKNLISVYCLCNxSNNVSVEFFPAHFHVKDLSTGDRLLQGRTRDELYEWPVTNQNTISLFASPSPKTTYSSWHSRLDNP
SLPILQTLVSQFSLPLSSSEKQNPCSHCFINKSHKLPFYTNSITSTQPLQYIYTDVWSSPITSVDQYKYYLVLVDHYTRY
TWCYPLKQKSQVQETFIAFKSLVEVHFAAKIRNLFSDNGGEFVALRSFLAEHGISHFTSPPHTPEHNGIAERKLHHIVET
GLSLLHQASLPTTFWTYAFATAVYLINRLPSKVTNAISPYQKLFGRSPNYLKLRVFGSLCFPWLRPYTKHKLESRSLPCI
FLGYSLTQSAYLCLHRATGRLYVSGHVQFVETQFPYSDDVIAPPSQPETTPPSFPPHTQVPLRPTPLVQHNSVPPPSGEP
HLQETSASLSTNSVSAENNNELGAGTNSTATSSSTSQRSSAGNTPSLIPTELAPQPINTASSVSQNPDPAFVAPPPQNHH
PMQTRGKNKISKPTKKLTLVATTLSLKPTISTTLNQAMRDENWRRSMSAEYDAQLANNTFDLVPPERGQHVIDTRWVHTV
KFLPNGSVDRYKSRWVARGYTQEYGIDYAETFSLVVKSLTIRLVLHLAVTNSWELKQLGVNNAFLQGTLSDEVYVTQPPG
FVDPDRPHHVCRLRKALYGLKQEPRAWYHELKNFLCQMGCTNSTADTSVFIYIDGSNIIYILVYVDDIIVTGSSSHLVSA
CIHALSQRFSLKKPTDLTYFLGIEVTRTKNGLHLMQRKYIIDLLAKVNMQEATHVSTPMATSPKLTLTSGHGLDSPKEYM
QVIGSLHYLAFTRPDIAYSVNRLSQFMYSPTDEHWKAAKRILRYLAATLSHGIYISKHSPTTLHAYSDADWAGDSDDYVS
TNAYIVYMGSTPIAWSSRKQTGVARSSTEAEYRSVANTAAELRWVCSLLTELGVTLRHTPTIYCDNVGATYLRANPVFHS
RMKHLALDFHFVRDNVQTGALRVSHVSTKDQLADALTKPLSRSRFNELMDKIGVRKLPPS
>Copia-69_ST#LTR/Copia 28-4633 via tfasty with Copia-81_ST, 71.6% SW:3613, 2 frameshifts and 3 stopcodons. [Solanum tuberosum]
QTNHNHPLHLQTSDTPGVALIPMKLTGPENYGVWSRSMRLALLVKNKLGFVDGTCAKSSYKGDLAIRWERCDAVVLSWIS
AAVAPELMTSIVYASSSKKIWSDFKERFDKSNLTRIFHLWKEISVLTQGTKTVTSYYSRMRDLWDEMDVMVPSPSCDCEE
SSSHVEHVKQQRLLQFLVGLNESYAQVRSSILLSSSIPSVNQAYAMAIQEESQRKLDSPKEERNHSQxWQEKVISHDNFN
NQNQINNKGNQSYNFNNQNQINNKGNQSYNFNNQNQINNKGNQSYNFNNQNQINNKGNQSYNFNNQNQINNKGNQSYNFN
NQNRINNNNFQAKKTQGQTSQGRRLGLVYDHCGYKGHTKDNCYRIVGFPADFKSKRKVSVNEAYANTSTSLESNKGETEA
PRSESLSQIYFPxGYFTKEQYEQVVKMMESPSPSGTCRANAAAGMNPLPVSANGHTVKWIIDSGATHHITYCENLLSDCR
KLSESSSNKVQVLTRSKIHVEHVGNAVILENCRLKNVLHVPDFRFNLLSVSKLTKDLKCMVSFYPDLCVMQALSTGEVIG
IGKEEEGLYILRHDAIPTVGAVLKNNCIEDHRLWHLRLGHPSLKVMQHLPMLQNKVDEAVQEECMVCPLAKQCRLKFPSS
VTQTSKMFELVHLDVWGPHRDPTYDRKYYFLTVVDDFSRFTWISLLHTKKDVVVVLRSFISMICNQFDCVIKVLRSDNGT
EFFNNQVNDLLSSLGILHQSSCPYTPQQNGIVERKHRHILDIGRALKIQSHVPSRFWGECIQTAVYLINRLPTAVLEGHS
PYERLFGKPPTLDHIRVFGCLCFVAALPRGGKFEARAKRAVLLGFSSTQKSYKLYDLDAKVVSISRDVVFREEVFPFKVM
QPPDEGPYPLFSPFLNNTDDAPDDLDQVITPDSSSQPADTRIEDASSPCVESTMPVNDNLEDIQDEPHAPDTVESVQTDT
IGSRKTTRTCKPPVWIKDYVVPTKSSPHSITNHVCYDNVSTGYQSYLHAFSAIVEPQSFKEASQDKLWIDAMQQEIQALE
DNNTWTIVDLPPGGRAIGSKWVYKIKYKSNGDVDRYKARLVAKGYTQREGLDYQDTFSPVAKMVTIRTVLSLAASHGWDL
FQMDVNNAFLQGDLLEDIYMELPLGFQSQGGSKVYKLRKSLYGLKQASRQWNIQLTEALLLAGYSQSAHDHSLFIRKEGT
DMAVILVYVDDLLITGNSSKMIQEAKDTLHQNFKMKDLGSLRYFLGIEVLKSKEGLLLNQRKYALQLISETVLSGAKTVK
TPLEFNHKLTSVEFDQHIGGSDDSEVEDVTAYQRLIGKLLYLTITRPDICFSVQVLSQFMQHPKVSHWEAALRVVRYVKR
SPGLGIMLKRGTGVTKLTGYCDSDWASCPNTRRSVTGYMVKLGDSLISxKSKKQQTVSRSSAEAEYRSLAALVAELIWLA
GLLDELQFPVDIPISVFTDSKSAIQIAENPVFHERTKHIDIDCHFIREKVKSGFIDLEHLCTTMQPADILTKGLGAAQHH
LLMTKLGVLDIFHPSV
>Copia-72_PT#LTR/Copia 47-3974 via tfasty with SHACOP18_MT, 88.3% SW:4679, 1 frameshift. [Populus trichocarpa]
METEVRFSSIAPPVFNGDNYQFWAVRMETYLEALDLWEAVEEDYEIPALPNNPTMAQVKSQKERKTKKSKAKACLFAAVA
STIFTRIMSLKTAKEIWEFLKTEYEGDERIQGMQVLNLMRDFELQKMKKTESIKEYSDRLLNIASRISLLGSSLPESRIV
QKILVTIPEIFEATITSLENTKDMSKITLTEMLNALQAQEQRRIMRQEDEIEGALFVKHREKGKNYKKNGSSQASSSDSR
NFNRSNTGNKKGPFPPCQHCKRRSHPHFKCWRRPEAKCNKCNQMGHEAVICKNKIQQHGEEAQIADQEEEDQLFVATCIS
RNDSSESWLIDSGCTNHMTHDRNIFKELKQTTSKVRIGNGEYLAVEGKGTVAILTCSGTKFISDVLYVPGINQNLFSVGQ
LIEKGYKVVFENNCCLIKDVNGHDIFKIIMKGKSFALNPLEEEHTAFPIKENITDIWHKRLGHYHHRGLMLMKSKMMAKD
FPALDDHISSCRTCHTGKLNRKPFPEATWRATKKLQLIHTDIAGPQRTPSLNGSLYYVVFIDDYSRMCWIFFLKHKSEVA
QVFWNFKAKVENESGCKIQALRSDNDKEYTSNAFNVFCEEAGIHHQLTTLYTPQQNGVSERRNKFILEMTRCLLHEKNLK
KFWAEAANTVVFLQNRLPTRALKDQTPFEAWYGYKPSLNFLKVFGCLCFTLVPQVKRDKLDKKALPGIFVGYSLVSKAYK
IFQPQTGKIVISRDVQFLEDEEWDWNDAIKEDSASPKGNYLVSDTDDQSMEDWDINMTDDTPVRGTRSLLDVYQRCNIAV
CEPADFEEAKLDQNWLAAMKEELLMIKRNNTWELVDRPQNRNVIGVKWVYRTKLNADGSINKLKARLVVKGYAQIFGVDY
SDTFAPVARLDTIRLLLAIAAQLNWKVYQMDVKSAFLNGVLQEEIYTEQPEGFANEGEEDKVCLLKKALYGLKQAPRAWY
SRIDEHLQHLGFTKSLSESTLYIKQNGDNILIISLYVDDLLVTGNNNNNVETFKQEMMSVFEMTDLGLMSFFLGMEVKQA
EHEVFICQKKYAKEILKKFKLEDCKAVSTPMNQKEKLCKEDGAEKVDQAQFRKIVGCLMYLTATRPDILNAVSILSRFMH
CASELHFKAAKRVIRYVKGTCNFGIRYTRSREFKLVGYSDSDWGGSIDDLKSTSGYCFSLGSGVFSWNSKKQETVAQSTA
EAEFVAATAAVNQALWLRKILSDLNLEQKESTEILVDNQAAISISNNPVFHGKTKHFNIKLFFLREVQKDGSIILIYCKT
EEQAADIFTKPLPVNKFEFLRTKLGVCSS
>Copia-73_ST#LTR/Copia 117-4601  [Solanum tuberosum]
MTNGTTTEGTSTGFGNGVTSPVTFPVIDHNHPLFLQHTDTPGSSLISLQLTGSENYALWSRSFRIGLVGKSKLGFVDGRF
PKSMFEPLLHDQWEKCNAVVLSWIMNAVRLGLLSSVVYASDARKVWLDLRERFDTVNGSRIFQLHREIHTLVQGTMSIAE
YHSRLRDLWDEYDSLMPCPSCPCPESKKFGEHCDYQRLLQFLMGLNESYSPPRSQILMMSPIPTLNKAYALIIDQESQRT
LASSVSTTSGLIEGTALYSHKSNTYTSGAGTSKGPFPGGSGGSGGGYSGASASGGGYASNSGGGYKAKKHLLICEHCGCR
GHSRDQCYRIVGYPADFKSKRKSSVYANQVAAPNEPGQEIRTNSNSHTVPVAGSPNGAFFTKDQYHQILQLLSKPGGEPF
IESSINIATDDDTGSSPTTLSCSYANRKWIIDTGASHHITSNLDVLDKAKVAFDHIASRVHLPNGKAVSVSHIGNTKVFQ
DQSISNVLFLPEFKFNLLSVSKITKELQCMVGFFPDFCVFQDLSIGQVKGIGKEEHGLYILNEGPPSTPKMPVNDSRAHV
NYVKTESSNIWHKRLGHAPIDVIKRHESLSYLSNKDQSHCTVCPISKQTKLPFALSTHKSKAVFELLHCDLWGPYRVPTH
NGKRFFVTIVDDYSRYTWIFLVTSKVDTIVVIKHFLLQVQNVFSTTVKTFRTDNGCEFFSKDFQNLMCEMGIIHQSTCVY
TPQQNGIAERKHRTILAVARSLRFQASIPLRYWGECVTTAVYILNRLPSKLLAYKSSFEKLYLHSPVLSHMKVFGCLCYA
ACPKIPDKFSSRAIPAVFMGYSSTQKGYILYDIHAHSFFVNRHVVFQEDIFPFKHLHASTNPMFPVVEYVPSASDCMPSQ
TETTDMPPLSSRSSSHDAIPVMSEPVVPVSLPSTTGVPSRRSARSSKPPLWLQDFVTKSKNNTCNYSLANQISYDHLSPA
YRQVLKAYSALTEPVSFKEAATDPAWVKAMELEIAALESNKTWSIVDLPPGKKPIGCKWIYKIKFLASGEVERFKARLVA
KGFSQQEGLDYGETFSRVAKMVTVRSVVALAASRGWFIYQMDVHNAFLNGDLHEEVYMVIPNGFARQGECQKVCKLHKSL
YGLKQAPRQWNMKLTEALVQMGFKQSHYDYSLFTKQAGDAVVVILVYVDDLLITGSSHELLCRTRQDIQKRFKMKDLGEL
KFFLGIEFSRSSKGILMTQRKYALELVSETGLGGAKPVHTPLELNKKLTTVQYDELVLGSKTEGDELLTDPTQYQRLVGR
LLYLTMTRPDLAFTAQVLSQFMHSPKQSHMEAALRAVRYIKESPGLGLLMPAEQTTQLTAYCDSDWGACLETRKSVTGYL
VKFGGGLISWKSKKQGTVSRSSAEAEFRSMAACAAEVTWLIGLYKELGVSLTLPIKMVCDSKAAIQIAANPIFHERTKHI
DIDCHFVRERICQGILQTEHINTKHQPADLLTKSLGQAQHGLLMSKLGMKNAFQP
>Copia-73_MLP#LTR/Copia 70-4687 via tfasty with SHACOP15_MT, 60.0% SW:1423, 1 frameshift. [Melampsora larici-populina]
MSSPAEAPSPANTSDDPIEDQNEESSESSFNSTHTSHTELPPRNTIIMTQPSTQTPLLSSQKDFAVALNISLSKIPTTII
LGKSNYKHWAIGIKRSLRPLGLDRYLQSPNRPDDTTEEEHLANKECIMNFLLSRMDSSMSAYVESKLQIQIDEEIDLEYE
PSKLWKIVRENKAPISEAAQFQLDNQLDEFRQDNRTTLEAHLAEFRELKDELTLAGGDLNDGQLARRLIKSLHPDNQLIL
SNVFDMVKPLTYDGVEQYILKKEKELRNLPQFANLHKNQSFHPGAHFVNRSNNQNRNNQFTRPKCTADRCVCKYGRDECF
ENPKNQEKKIRWQKDLIKKGRWRGQIPNHLQSSSQPKTFQHRSSSNVQPETNIDCDLDELTEAMNSMNVSTDDSQPTVFH
IDYFCSNKAVQAKVPSNSFGLADTGSSHHMFNNLKHFDQNSLTPNPDPSKRLNLAGGNDTLEIQKIGTAYLLDADGNVMK
FENSLYVPHLNKNLIAAGALIKKGVVPSINPTKPHLFDLILGKKTLFRGFFSGNLMIVKLIECPVRQIPSQQSSSISIIQ
SDTLINLHNRLGHPNFTYLRKMIKDEMIEGVPKNFDFSKPVECIACIKSKSERPPFSNTRPRAENKLDNVHVDLSGIVRG
YVNSGYLYYILFTDDLTGMRFVYFLKSKDKNSVFNSLCAFISFAERQSERKVKCFTLDQGSEFFNSLFVPYCKEHGIWLH
ETAAYTPEENGVAERSNKTITYKARALLQHSNVPPSFCFEAVNTAVYLDNRTVSLAYNKGIMTPFEGWYGRKPSVSHIRT
FGCGVEYIVRKSQRDGKFHAITRTAVLLGFATDNFNYRLYDLESKKILTSHDVKFREDFFPFRKSIKFQYNHLFSKKELN
ELEDSHPGLETVINLDDDDYPILPNPRPDVNPVITSESEPPDVNTDNIPAPQSTPPETTEESEPPSDASQDAEQIPNQQP
TIRKSTRDRKPPDRYTPSSQHTFWADINAFITREEEDLYAYSTMPTVRLVNEPKTYKQAMKSSEKEEWIKAMNKEINSIN
ERKVWTIVKRPKNRSVVGGRWVFRIKPNLDGSIAKFKARYVAKGFSQVAGVDYHETYSPTGKPASLRIMIAIAALNGWPV
HSMDAICAFLNNKLDYEIYMELPDNLKEIYGADMVACLGSTIYGLKQSAKYWSDDVTEFLLSIGFVQSEADACVFIRISM
NGTKFSAMYVHVDDMAITGNEIEEVKQLISKRWEMEDLGISHCIVGIQISRTSEYSYAIGQPAMIESILERFGMNNCKPA
STPLPAEQKLTRASDFDAQDFARQNLPYRNGVGSLMYLSQCTRPDIAYAVGVLSQHLDRPSRAHWNALIHVLRYLRGTTH
LFIEYSADDKGLSGNQSWDCPYGFSDADWAGNKDNRRSTTGYVFKFLGGAVSWKSRLQPTVALSSTEAEYRATTEAGQEA
TWLQNLLKSFGFNINQPTRLHCDNLGAIHLTSKTIFHARTKHIEIQYHWIRELVKRGTVELTHCQSHKMIADVLTKPLGK
ASFQWLRKSIGLHHREPTS
>Copia-64_Mad#LTR/Copia 148-4235  [Malus x domestica]
MAGSSGADLRAPIFNGENFDFWQIKMKTIFRSHDLWDMVETGYNPPAKKEDEELTAAELKQLKENMIKDAKALGIIQGAV
SDEIFPRIAILETAKEAWDILKQEFIGDKQVRSVKLQSLRRDFEYTRMGEHEAFSVYLVRLFDLITQMKSYGEDIGNQRI
VQKLLISLPRSYDSIVAVIENTRDLETVDVQDVVATLKGYEQRIERHSENSTEKAFASLSIAPRKNNYNGNQSFKPTKNW
XTKGKKWDNKPVHQQGKFTGSSDSAKNACKYCDKLHFGECWFKGKPRCHNCDKPGHFAKDCRSKKVTQQANYVEQVENNP
TMFYVCMAAAVKKGEDVWYVDSGCSNHMTGREDLLENIDRSVTAKVEMGTGELVNVVGKGELMVATKQGKRYIKEIMLVP
GLKENLLSVGQMMEHGYYLVFGGIEVRIYEDFTCSNLVVKIPMKGNRSFPLKLQPGIQIAMRASVRQAAEIWHRRLGHLN
MNALMQLQEHDMVTGLPELRVNSTVCEGCALGKHSRDAFPKETNWRAALPLELIHTDICGPMQTPTKAGNKYFITFTDDC
TRMGWVYFLRNKSEAFGVFKRFKATVELQSGFKXKKLRSDRGGEYTSLEFSQFCEDLGLERQLTVAYSPQQNGVAERRNR
TIVEMAKCMMLEKGIPFEFWAEAVNTAVYILNRCPTKALNKKTPFEAYSGRKPGVKHLRVFGSLCYAQVPSQMRQKLDAT
SVKCIFLGYGTCEKGYRLFNPKTNKIVISRDVIFDENSCWDWKSGAKKNLSISVPSEVHGGEGSDVEAVEDDAVFECTES
LQEQHEQVIASSSSQEEQVDHTGSQEYDHTPLRFRSLNEVYERCNFCVIEPECFEEASGDEAWRKAMSTEIEMIEKNDTW
ELVNRPFDKPVIGVKWVYKTKLNLDGSVQKNKARLVAKGYSQKPGVDFNETFAPVARLDTIRTLIALAAQKEWKLFQLDV
KSAFLNGTLHEEVYVDQPQGFEVQGQEDKVYKLKKALYGLKQAPRAWYDEIDTYFNRSGFEKSQSEATLYTKFSDAGVLI
VSLYVDDIIYTGSSDEMIQEFKKDMMKQYEMSDLGLLHHFLGLGIIQTDKGIFIHQKKYAKSLLEKFGLKDCKAVKTPLA
IDDKLSKEDGSEDADEGLYRTMVGSLLYLTATRPDLMYASCLLARFMHKPTRKHMGTAKRVLRYVQGTLDFGIEYVKGKA
AVLIGYCDSDWAGSLDDMKSTSGYAFSFGSGVFSWASVKQCSVALSTAEAEYVSAAEATTQAMWLRFVLSDFGEEQVEAT
PLLCDNTSAIAMSKNPVFHQKTRHINRRYHFIRDAIQDGTIELHYCSTEEQLADIFTKALPKDRFEYLRTALGVKSAKHL
EGS
>Copia-57_ST#LTR/Copia 82-4515  [Solanum tuberosum]
MAVAVDNELPEKLSHNHPLFLSTADTSGVVLISIQLTGSENYSVWSRSMRIAILGRNKLGLIDGKCRKDGFGPNLTDLWD
RCNAIVLSWIMNCVSKELLSGIVYSTDACSVWRDLKERFDKTDGSRIFQLHREIVTLVQGTSTIAEYFTKLRLCWAEFDC
IAPFPGCNCTESRGFGEFMKQQKLLQFLLGLNETYEQARSQILMLVPLPSVNQAYSMMIERESQRIIANSASTVANLEIA
ALMTTRQVPNKFKRDWNAQCDHCKMTGHTKANCYRLIGYPPNFRFKKKTGQLNGPYEKEGESRSHAHNVRDQESRPHNDG
AQARAAHVNFRNDPGPINYSRADNFPADWNRCSGSHISPHQNPQMMQQYDHSPHYNQSRMGMHKADEVPESFSSNMCRLS
DSANMGGNISVSHLYESAITDKVFASYACNGDKEWIIDTGASNHMISHKEMLNFKKPVTAYHKQVYLPNGGTVEVSHIGS
CDLMDGRSVKNVLYIPDFRYNLLSVSKITKELQCSVQFFPDYCVFQDLSSGKVLEIGEEKDGLYLMNHKKNDTDYSLKGM
VATKNKMDILLWHKRMGHASVGTMTHLFNIDSTECKRVLDKCVVCPLARQTRLPFPNSENRSSYIFDLLHLDVWGPFHVS
TFDGYKMFLTIVDDHSRMTWIYLLKLKSDVVVILRNFFQLVSTQFGKRVKVLRSDNGTEFVNSNCHDLFTSLGIIHQKSC
VYTPQQNGVVERKHRYILELARAIRFQGSIPIKYWGHCVLGAVYMINRLPSTTLHNKSPFEVFHGVKGSLTHLRTMGCLC
YAKCLPPGDKFEAKAVPAVHMGYSEVTKGYVLYNLLTHSFFISRDVSFREDSFPFQTPSSSPTVFLDTSADFFDDPYITN
QQLPPQPDDGPAIPDIIPDIVAGDIDIPDMHAVIEPRPLRQSHRARKHPSWMTDFVTNVASTSSLHPLSQCLHYANLSSQ
YQSYLCAFSSVTEPQSYKEACSDPKWISAMQEEIQALEANNTWLIVPLPPHKKPIGCKWVYKVKFKADGTVERYKARLVA
KGYNQREGLDYHDTFSPVVKMVTVRSVLSIAAASHWHIHQMDVYNAFLQGDLNEEVYMSLPEGFSSQGETSGMICRLVKS
LYGLKQASRQWNVKLTDALIDLGFNQSSLDHSLFIKRHHAQIVVILVYVDDMLVAGSDLVLIEQTKQELHARFKIKDLGI
LRYFLGIEFSRSDKGILMNQRKYSLELIEEMGLTGAKPSWTPMDNNLKLTTTLLDEAMNVTNDHVLTDKGPYQRLIGRLL
YLTLTRPDIGFAVQTLSQFLQCPKKSHMEAALKVVRYIKREPAMGVLMSSKKERKLIAFCDADWAACPNTRRSVTGFLIK
HGESLISWKSKKQTTVSRSSAESEYRSMASTISELVWIIALYKELGEEIQLPVKLFCDSKAALQIAANPVYHERTKHIEI
DCHFIREKIQMGLIQALYLRTQDQQADIMTKGVGKSTT
>Copia-55_VV#LTR/Copia 166-4577 via tfasty with Copia12-PTR, 86.3% SW:5324, 1 frameshift and 4 stopcodons. [Vitis vinifera]
MAESKDITQPLIPQTDSILSDLTTRMTEVLTRAQTSPQPLLHDSSTTPIGIKLEGSNYALWSQVVEMYISGKDKLGYING
DSPQPPETDPSFRRWRTENAIVKGWLINSMDPSLIANFIRFPTAKQVWDSAAITYFDGTDTSQVYDLRRRVTHMKQASGS
IEKYYNDLxGLWREIDFHRPNPMECAIDIQKYNSVLxEDRVYTFLDGLDDRLDKIRSDVLQIKPFPTVEQAYAFVRREEV
RQTVMISGADTPLGAVMASKGIKGSHHQMPPKPGALSLSSGKSNSSFKTKPPSDGMKCTHCGNTKHTRDTCFKLHGYPDW
WNDLQARKKREIIANDNHTGRAVVVTCDASLSLIPQAESSHDSGTSSKVFHISTHKDDEDWILDSGATDHMTFDSKDFSN
TTQPRRSCVANANGVTYPVTGAGTVTLSSSLSLSNTLLVPSLSNRLMSVSQVTSDLNCVVLMYSTFCLLQDILTKEIIGR
GTKRGGLYYVDAFSSGRANHMHHKVGNKERQIWLWHHRLGHPSFGYLKHLLPGLFSKATHLDFKCDTCILAKSHRASYPM
SMNKSMIPFYLIHSDVWGPSLVTTSSGHRWFVIFVDDCTRMTWLYLLKHKDEVFSIFQSFHAMVQTQFSARIKILRSDNG
GEYVNQQFQTYFNNHGILHETSCSQTPQQNGIAERKNRHILETARALLINAHVPNRYWSDAVTTVVYLLNRMPTKVLQFQ
TPLKVFSYHVSLPTVLMIPPRIFGCVAFVHLHKNQRTKLDPCAVRCLFLGYGVQKKGYRCYDPIAKRTYITMDVTFLESE
FFFSPISNSPLHGEIYGEERNWSDVEVLEVGDNPTHPNDDNDLVEHDPVPEPLRTEAKPVPESSEDAEYDVFPHSLVPND
PPTENIPEVSSPTTPLQTNAIDTSAGYVLPFRHNRGKPPNRYSPDIEERxSKYPIANHVSTQRLSEPLRAFAHTLSSCQI
PSRVEEAFSDPKWAxAIKEELEALQKNNTWVLSVLPEGRKTVGCKWIFSIKYKADGSIDRYKARLVAKGYTQKHGIDYQE
TFSPVAKLKTVRVLLSLAANLDWPLHQLDVKNAFLHGDLEEDIYMDIPPGYTATSEAKIACRLQRALYGLKQSPRAWFGR
LSSAMRKYGFQQSNSDHTLFLKHRLGKITALIVYVDDMIITGDDVEEISRLQDQLSTEFEMKNLGGLKYFLGIEVARSRQ
GIFLSQRKYILDLLAKVGLLECKPADIPIVQNHKLGEYVDQVPADKQRYQRLVGKLIYLSHTRPDIAYAVSVVSQFMHRP
SEDHMDTVMRILRYLKSSPGKGLMFSKNGHLKVAGYTDADWAGNITDKKSTAGYFTFVGGNLVTWRSKKQKVVALSSAEA
EFRGMVKGICELIWLKKLLAEIGIAPSSEMNLFCDNTAAIAISHNPVQHDRTKHVEVDRNFIKQNLEEKIIQLPFVKSED
QLADVLTKAVSARNFYNSLDKLGIKDIYAPT
>Copia-61_SB#LTR/Copia 106-4665  [Sorghum bicolor]
MGDSSSSSTNAPLAFGLLPPVSEKLSRGNYNMWFATVSSAIKGARLGGYILSSAAPPAAVIPGATTDDGKKGEPVPNPAY
EKWIAEDQIVLSYLFSSLTKEIFGQVARATSAKELWGAIQELHASQSRARIMATRMALASATKGTSTVAEFFVKMKALGD
DMASAGRRLEDEELVTFILTGLGEEFEPIVSAVSSRVEPITVNELYAQLAAFEQRKEIHGGGSQSSVNSATKGGRGGGSF
SNQQRQGNQNRGDGGRGGFRRGGGGRGNGGRGNGNNGGNGGGRSSFQYGIFCQLCGKEGHTVVRCFKRFDTNFTGPPQKS
ASSASTGSYGVDTNWYVDSGATDHITGELEKLSFRDKYRGGEQVLSANGAGMRINHVGHSTLCSPVRDIHLHNILHVPSA
SKSLVSPHRLVKDNNAFLELHPNHFSLKEQVTKKTLLEGPCEGGLYPLKPSHKQVLGAFKPSTSIWHSRLGHASSPVIQR
VLSRHNLAFSSESTSGVVCDACQMGKSHQLPYPKSTSVSSKPFELVFSDVWGPAPTSVGRHTYYVSFIDDFSKFTWIYLL
RYKSEVFQCFRDFQSLVERQFNLKILAVQSDWGGEYQSLNSFFQRLGITHQVSCPHAHQQNGSAERKHRHIVEVGLSLLA
HASMPLKYWDEAFLTAVFIINRLPSKVISNDTPHDRLFGSSPDYSFFRTFGCAVWPNLRPYNAKKLQFRSIKCVFLGYSN
LHKGFKCLEPSTGRIYVSRDVVFDESIYPFAQLHANAGALLRKELEILPDHLKNPSPDFGNARVLDQCLVNSNLSNAKTS
SSPSVDAGTLDSASQSVSKSDENRPFGRYFMQSASPAQHDNGGTVSQDDSPEPRTPAPTAASSGSATDLLPPPAGSLIPP
GGSSAAPTQPPVSPPVSPCVMLDPVPSAAGPTGAGSSAPTAPVSTSADLSSRGTSDPGAGAPVLTASSSDPVEVAAGSYA
PSAPVTESVQPPVAPPTHTYGTRLRHGIVKPKQRTDGTVRWGLQSVSDAAEPLSVKQALSDPRWVSAMNTEYDALLKNKT
WHLVPAPRGKNVIGSKWVFKVKRKADGSIDRYKARLVALGYRQQYGIDYEDTFSPVVKAATVRLVLSLAVSRGWSLRQLD
VQNAFLHGVLEEEVYMRQPSGYADSRFPNHVCRLDKALYGLKQAPRAWYARLCGKLLRLGFKSSKGDTSLFYYRQGSLVI
FVLVYVDDIIVASSSSDATTALLKDLEADFALKDLGDLHFFLGIEVWRNATGLVMSQCRYATDVLKRANMWNCNPVDTPI
AVNEKLSITSGTRLSDEDSTKYRSVVGALQYLTLTRPDLSFAVNKVCQFLHAPTSVHWSAVKRILRYVKGSLTTGLKLRK
SPSTLVSAFSDADWAGCVDDRRSTGGFAVFIGPNLISWCARKQPTVSRSSTEAEYKALANATAEMMWIQRLLTELGIAHP
SAARLWCDNIGAKYLSANPIFHARTKHIEIDFHFVRERVAQKLLDIRFIHTGDQVADGFTKPITAAKMREFKFNLNLVSG
>Copia-62_PT#LTR/Copia 96-4565 via tfasty with Copia23-PTR, 84.3% SW:4961, 2 frameshifts and 5 stopcodons. [Populus trichocarpa]
MRDPTSSTENSQANPSTLADLTSRISQMLSQTTTAATHESVAAPIGIKLNDTNYGLWSQVVKMYISGKDKLGYINGDLPQ
PTETDPAFRKWRTENAVVKGWLINSMEPKLIGNYIRFPTAKVVWDTIAITYFDGSDTSQVYDLKRRVTRLKQGEGSIKTY
YNTLQSLWREIDFRRPNPMKCEVDIQKYNSIIQEDRVYTFLDGLDDRLDKIRADVLQLHPFPTIEQAYAHVRREDLRQMV
MLSKADTSSSMAMISKGGQKSQQxPSLQMVMDGKPGMKSKTQVEGGGCTHCGNMKHTKETCFKLHGYLDWWHELKTKKKR
ESGRAALVSAESTSSSSIKPHLSLISxEDFSPAAANCSLDQNESCNHDWIIDSGATDHMTYDPQDFIETTQPKRTCITNA
NGEKYPVTGAGEVALSSSFSLSNTLLVPTLSNKLLSVGQVTEDLNCCALIYPKICLFQDILTKEIIGRGTKRGGLYYIDD
FRVGQANNARHLGNKERDIWLWHHRLGHPSFSYLRHLFPSLFSNSDNTMLKCKTCILAKSHRVSYPINxKRCETPFMLIH
SDVWGPAPVSVSSSIRWFVIFVDDCTRMTWLYLMKSKNEVARIFRSFHTMIKTQFSTKLQILGSDNGGEYDNKELxEYFQ
ACGLYHETTCSQTPQQNGVAERKNKHILETTQALLTAANAPPRYWTDAVTVAVYLLNRMSSRVLNFNIPLQALAHHVSLP
SILMLPPKIFGCVAYVHLHKNQRTKLDPCAVRCIFLGYAQHKKGYRCYDPATRRLYITMDVTFLETEYFFQESGSHSSLQ
GEMISEEQNINHGYNWENWPWFRDTNTRVGQNNGIENEQEQEQLTDTEDGTNTKVGQNNETENEQEQEQPTDTEDGRVGQ
NNETKNEQEQEQPPLGSVSTNHSPKNNPEVQFPNLSLNNIEDSFVGYKLPPRYNRGKPPSRHSSDHREEKTKYPIANHVS
TQRLSQPLKTFVHKLSSEHIPNTVQEALGNPKWNQAIIEEMATLQKNETWELMPLPEGKKAVGCKWIFSIKYKADGTIDR
xKARLVAKGYTQSYGIDYQETFSPVAKLNTVRVLLSISANLDWPLHQFDVKNMFLHGNLEEEVYMDVPPGFATSHARVVC
KLHKALYGLKQSPRAWFGRFSLAMKKYGFKQSNSDHTLFLKHRGKMVTALLIYVDDMIITGNDEEEISSLQEHLATEFEM
KNLGGLKYFLGIEVARSSKGIFLSQRKYVLDLLAETGMLDCKPADTPTIQNHKLGEHPNQIPTNRERYQRLVGKLIYLSH
TRPDITYAVSLVSQFMHSPSEEHMEAVFRVLRYLKASPGKGLMFRKYNHLNIDGYTDADWAGNIVDRKSTSEYFTFVGGN
LVTWRSKKQKVVALSSAEAKFRGMAKGLCELLWLRELVEEIGYSFSPPMRLFCDNKAAIQIAQNPVQHDRTKHVEIDRHF
IKEKLEAKIVQFPFVKSENQIADILTKVVSSKVFHNSLDKLGIEDIYAPT
>Copia-61_ST#LTR/Copia 101-4449 via tfasty with Copia-81_ST, 76.7% SW:3796, 1 frameshift and 2 stopcodons. [Solanum tuberosum]
MVTNEQTSMATNEVTTLNHNHPLYLQASDAPGLVLVPIKLTGPENYALWSRSMKLALRGKGKLGFIDGSCAKIAYKGVLE
EQWEKCNAIVLSWIASTVTSELLPGIIYASNAKRVWGDFEERFDRSDLTRIYHLWSKIAALKQGTDSVTSYYSKLRDLWA
EMDVMIPSPGCACEDSAAYVMHLRSQRLLQFLMGLNESFGAIRSSILARKPIVTVNEAYAVAAQEESQRTLGVLDKTRDP
LTLLAGKTQGYRPRTKKFVPPGTICDHCGFKGHFKGDCYRLVGYPLDFQSKRKGTEGFKPDFKPDFKPNAHFTRNADEFK
KEKHTENQMSPSQYEDLVNRMDRAGTSDCVANMSGIASLDPKDNKACEWIIDSGATHHITPNEDLLVTSRKVHNGNSDGV
QVPTGKRCEIKGIGVAEVLDEHELKNVLHVPDFKFSLLSVSKLTKELKCSVSFYPDFCVFQGLYNGKVLGIGKEMEGLYI
LKNQIKPIVHAMAAENRSGDTKLWHLRLGHASTGVMQHIQSLRHLSDKNVQSYCEICPMAKQCRMKFPVSTSKTFKAFEL
VHIDVWGPYRKPTFDKKYYFVTIVDDYSRYTWLCLINSKSEVIVVLKDFIALIKNQFALSVKVLRSDNGTEFFNSSVIDL
LAYHGIVHQSSCVYTPQQNGVVERKHRHILEVARALRFQSSFPIHFWGECVRTAVYLINKLPTEVLNGKSPYEMLHQKIP
RIDHLRVFGCLCYATKLPKxDKFAARARKSVLLGYSEVKKxYRLYDVDEKIFFVSRDVTFREHVFPYQSDAVSCELDMFE
LCNSDLSPIAPAEHNEPVQLDTSIDYLPSCTVNPIPNIVEDPIVITEAADNTPPCVSDSTQSQDIQPIRHAKIRPVRNAK
PPSWLDAYITAHKPSASCFYPISDCLNYSHLSVPYQAYLGALSQPSEPKSFSEASLDERWIAAMSDEIAALESNNTWEVV
DLPTGKQAIGSKWVYKIKHKADGSIDKYKARLVAKGYNQKEGLDYHETFSPVAKMVTVRTLITIAASKDWPLMQMDVNNA
FLQGDLYEEVYMSLPQGFHRQGESKVCKLIKSLYGLKQASRQWNIKLTTALIEAGYTQSPHDHSLFTKQSGDDIVMILVY
VDDLLITGNNKKMINSAQETLHSKFKVKDLGPLRYFLGIEVMRSDKGILLNQRKYTLELLSTTGLGGTKPVSTPMEMNMK
LTLVEYDSVVGNESDPIMTDIHSYQQLIGKLIYLTITRPDICFAVQVLSQFMQHPKKSHWDAALRVIRYLKGAPGQGILL
KIGAITDLTAFCDSDWATCPNTRRSVTGYVVMLGESMISWKSKKQHTISRSSAEAEYKSMAGTVAEITWLIGLLKDLKID
INTPVRLCCDNKAAMQIASNPIFHERTKHIEIDCHFVREKLKDGLIKPEFVGTKSQLADLFTKGLGTVQHQFLLSKLGVV
DVFHPSLRGS
>Copia-74_ZM#LTR/Copia 461-5137 85.1% sim to Copia-24_SB, SW:4727, [Zea mays]
MSTEEAAKKTEIDGSGSGGITKSEMMSEMRSMIQELMGLGLIGAKANTGTSELKLELVPNDVKLEGSKNYLSWSRRVRVL
LGGKGVEHYLEETCVEPIDKLGAEWRIWHATNSVIVAWLLASMSPTVSKRVEAMRTASQIWKTLSNIYSRKGNVMVMMEI
QSKADAVKQMGRPVEQYASELQHLWGELDHYAPLQMVCPQDAQMVHKWVEDRRVTHFLKNLDSEFESRRAAFCHQESLPT
MDEVVSAMIDEESRLRVMSSGNHVKPAYVAIEDRECYNCGERGHLSYNCPNPRGNGGRGGSRGGRGGTRGRGSYGRGRGG
RGRGRGGSRANIATTEESLSVTLSGEQAKQWEQWQKGKSSECLTSPDGQATNSFGNFANYAHMGEGTQAQAFASSCRHHI
DWVIDSGASKHVTGMSTPFKTYIPYTHSESVQIADGTSQQIRGIGSVECTPSLSLSSVLHVPSFPVNLLSVSSIIDQFKC
TVIFDENSCVFQEKSTGRKIGTGVRHNGLWFISHEESALKATVEGDGKEILLHHRRLGHISFENLSRLYPMMFKGVDKSR
LVCDACELGKHTRSTYPSVGLRSCEPFILIHSDVWGPCSVTSVNGAKWYVTFIDCYTRMTWIYILKHKNEVLKCFQDFHK
LVANQFDARIRVIRTDNGTEYVNNEFRSYLSGQGIIHQTTCPGTPPQNGVAERKNRHLLEVARSLMFQMNVPKYLWSEAV
MTATYLINRMPSRILNMKSPAELLLGKCDFRVPPKVFGCVCFVKDHRPMVSKLDPQAVKCIFVGYSSTQKGYKCWDPIGK
RLLVSMDVTFREEDPYYRKKVDPYQILEDFSPVDGGDRREGEDDSGRGGDEASGDEASGASGGVIVGGMIPPEVEKGITT
QILSDDESSGDHGDPTINIQEETEDDEAVIVGSIPCPTAGKLNEKQGEQHDCSIGAKVNDKQGEQPIVYYRKRTKKQGEQ
PQPGCVEAPVPYLSSDSSPDPAGNVSPIHISPIPEHEELPLAQRRVPRVNAGKPPSRYCYEHDIAKYVSYSSVSPAYRTF
IASLQTISIPKDWRCAKQDPKWKDAMKEELLALQKNKTWELVHLPEGKKAVGCKWVFTVKQTPEGKIDRYKARLVAKGYS
QTYGIDYDETFAPVAKMGTVRTLISCAANFGWPLHQLDVKNAFLHGDLKEEVYMEIPPGFANKQTIGKVCRLKKSLYGLK
QSPRAWFDRFRRVVCDMGYHQCNGDHTVFYKHQGSCITILAVYVDDIVITGDDAKEIKKLKERLSRAFEVKDLGPLRYFL
GIEIARSSQGIILSQRKYVLDLLSETGMLGCRPCGSPIDRNHQTCAESGDPIDRERYQRVVGRLIYLCHTRPDIAYAVSV
VSRYMHDPRTGHMKIVYQILRYLKGTPGKGLWFRPNQHMNLEGYCDADWASSRDDRRSTSGYCVFVGGNLVSWRSKKQAV
VSRSTAEAEHRAMALAVCEMIWLKGLLKELQVLKNETMLLHCDNVAAINIANNPVQFDRMKHVEIDKFFIKEKIDSGALK
LKYVKSRNQVADSLTKGLGPKDNELACNKMGMLNIFSPS
>Copia-87_BRa#LTR/Copia 63-4088  [Brassica rapa]
MTEKESSLRIPKLDGDYEHWAMLMENLLRSKEWWELIETGITQHGRNVTLTEDQRTELADQKLKDLKVKNYLFASIDKNV
LKTIVKKDTAKDIWESLKAKYQGNTRVKSAQLQRLRRNFEVLEMKESDSITDYFSRVMVVSNDMRNLGEEMSDEKVVEKI
LRTLVEKFTYVVCAIEESKDIKDLSVDELQSSLLVHEQNLSKHTGEEQALKMEGGRGRGGYSNGRGGYQNRGRGSYRGGR
GGQDRGSGSFDKSNIECYKCHKLGHFKNECPSWEKAANYAELEEDILLMAQVETEERHVWYLDSGCSNHMCGNKEWFLDF
DNKFRQQVKLGDNRRMQVEGKGNLRLEINGVIQVITAVYFVPGLKNNLLSVGQLQQKGLRIIIEEDTCEIWHKQQRRLIM
HSVMTTNRMFVVTAVVKEPKEALEANQVQSMVETLEETWHKRFGHLNHNSLLTLADKAMVEGLPKININGTVCEVCMKGK
QIREKIPKKSLWRATRRLELIHSDICGPISPTSESGKRYIINFIDEYSRKCWTFFLAEKSEALRTFKEFKNAAERESGEL
LVCLRTDRGGEYNSKAFQDYCVEHGIKRQLTAAYTPQQNGVAERKNRSIMNMVRCMLFGMKVPLRYWTEATQYAVHILNR
SPTKRLGEVTPSERWSNHKPTVEHLRVFGCVAYALIPYEKRVKLDEKSVRCVMFGVSKESKAYRLYDPIGKRIIISKDVR
FDEEMQWSWEGNDDEEKFVECLDDEAEEEKSQGENLEAEPVANEEMVEEEHVPAPEAVEEENVPGTGEGSNTGRAGRSKL
KPVWMKDYVVDGRGLIMEEDGEELIAMFVSGDDPEKFEEAVRYDIWRRAMEAEIESIEENETWELVSLPENAKVIGVKWV
FKTKLNEKGEVDKYKARLVAKGFHQTYGVDFHEVFAPVARWDTIRLILGLSAQRGWSIYQLDVKSAFLHGELKEDVYVEQ
PKGFESQEDGEKVYKLKKALYGLRQAPRAWYSRIESYFMREGFVKCYCEHTLFVKTEGGNSLIISLYVDDLIYTSNSESM
LDSFKKSMQEEFSMTDLGKMKYFLGVEVIQDEAGIFISQRKYALETLKKYGMQDCNAVRNPMVPGNKLTKRGAGEEVDPT
AYKQLVGSLRYLTATRPDLIYSVNVVSRYMENPREEHMMAVKRIMRYVKGTAGFGIQYLRGGEEKLVGYVDSDYAGDEDD
RKSTSGFTFVFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFDQGDGTVLFCDNSSAIKLSKNPV
LHGRSKHIHVRFHFLRELVNEGIISMEYCSTHEQLADIMTKPVKLEVFEKLRADIGVTVKEG
>Copia-80_Mad#LTR/Copia 111-4384 via tfasty with Copia-87_Mad, 86.1% SW:5062, 1 frameshift. [Malus x domestica]
LAITTAGSPSSGSASCPNSSLSSTTSSITIQNIGSMVPIKLTSTNYLTWSALFAPILRRYNLTGIIDGTMSAPPKYLLDS
SGNQTSTLNPQYVTWFENDQNILIWINSTLSDALIPYTVGVNSARELWSKLESRLATASQSHIHELRSRLRSITKGDSTA
ALYLQQIEEIADALANAGAPIEDSELISVILHGLPSEYESFVDAIQFRLGSTTIDELHGLLLSKELQLTARKKTSPSAPV
QAFNASAGLLPTPLGDFGAQAFFTQNGSSSQSYGPPNRGNFSQSRNYTNRGSQRNHQGFQGNQRFNRGSQGNHRYNRGPR
SQYNNSHRKISCQICRQLDHEAVECPQRMNPNFGNKNSPAAYHASTPPTWLLDSGASSHMTHSSTNLQNPEPYTGPEQVY
IGDGKGLPILNSGSSTLNTGSHCFDLKNVLHVPHLKQDLISANRFILDNWCSIHLYPFHFIVKDLSSEKTLFKGPVRAGF
YPFHASSIAGNQKAFAASAKASQQTWHHRLGHPALKILNKLASQSCISVSSALNKSVCSSCALGKSSKLSFASVSCTSSR
PLELLHTDVWGPAPLISVNGYRYYLIFVDDYTKYTWFFPLKSKSDVFDTFVQFKVLVETLLSTKIVILRSDSGGEFLSLK
FIKFLQEHGISHQLSCPHTPEQNGCAERKHRHLVETARTLLAASKVPHSYWVEAFATAIYLINRMPTTTNFSPWELLFHR
SPDYTSLKIFGCRCFPWLKPYTTSKLDPKSKECVFLGYSLNHKGYKCLDPSTGRVYLSRHVIFDEDTFPFAQKDHPQPSH
SSSSSSHLQPSNPIPTTLTFPPLSQPSPSPSPILSPTPSSPSPSQSLPVPSSTALPNPPLPSLPHPLSAPSIPLNTHTMQ
TRSKSGIFKPKALSATKYPISSDLSPDYTPSTYLQASKHPHWRQAMQEEFNALIQTGTWSLVPANPTQNLVGAKWVFRIK
RKPDGTIDRYKARLVAKGFHQQQGIDYTETFSPVAKPVTIRLLLTLAAKFDWFLNQLDVSNAFLHGTLTESVFMIQPPGF
EDPTKLNHVCHLHKSLYGLKQAPRAWYDKLTTALKSLGFSGSSNDHSLFVKKAPALIFILVYVDDIIVTGPNAQLCQDVI
SQLSSLFPVKDLGPLHYFLGIEVKRSSSGILLSQHKYILDLLSKAHMEGSKPCVTPLSTTKLDHDSSLLDKPEEYRSLVG
GLQYLTWTRPDLSYAVNLVCQFMHSPRQAHFQAVKRILRYLKGTLSLGLWFPKCAKPLTLTAFSDADWAGCSLDRRSTGG
FCVYLGDSLISWSAKKQPTVARSSTEAEYRSLANTAAELTWICKLLVDVGLDLPSSPQIWCDNISAISLARNPIFHARTK
HVEIDYHYIREKVLANQVQVLFVCTQDQVADICTKALSKHRFHLLRDKLSLRLPQLGLRGDNKGK
>Copia-90_Mad_gag#LTR/Copia 831-1883 [Malus x domestica]
MANLAKLDFAALDITGKNYLTWVLDTKIHLEAANLGDTIKEESSSSSQDRAKAMIFIRRHLDEALKSEYLTVEDPLALWN
ALRSRYNHQTTVILPRARYDWTHLRIQDFKSVAEYNSALFRITSQMKLCGDTITEEMLLEKTFSTFHASNMVLQQQYRAR
GFTEYNQLISVLLVAEQNNELLMKNHNSRPTGSAPFPEVNVASLERNTISSRGNNYKRGRGHKQGRWKGKGKNHGVQFHN
QVPRHNPGPSFKNANRQKGKAHVNTPRNHEGGCHRCGGNGHWARTCRTPKHLVELYQASFKEKGVEINFLDQAXPMETPD
PVTNLSGQLNTTHLDATDFINERGNEVYGSD
>Copia-92_PTr#LTR/Copia 34-4096 via tfasty with GmCopia11, 6 frameshifts and 3 stopcodons. [Populus trichocarpa]
MVNPNFPLQCPRLTKDNYETWCIRVKAWLGSQDVxETVEKGFEEPIDGATLTSAQREAVQKARRKDQQALTIIHQCLDDA
TFEIVANATTAKQAxEVLQESNQGADNVRKVRLQKLRGDFEKLHMLESENISEYFARVLAIYNQMKRYEEKMEETRVVEK
ILCSLQKKFHYVVVAIEESQNMDVLSIQGLMGKLQAHEERVNEIQEDVGAQALFFKARGSGYSQGGRGRGQSKGRGGRGR
FGRGGRGSLNRSTGRPNEANRSTGYTDSGNPRSRFDKSKVKCYNCQKIGHYARDCWSPTKRVEENANLVIEEEKEATLLL
VHDERMQDKENMWYLDNGASNHMCGDKDKFMELDEAIRGNVTFADHSKVSIKGKSMILIKLKDGSHQFIGDVYYIPTVKS
NILSLGQLLEKGYEIKMKDRTLTLLDTKGAMIAKVAMTKNRMFLLNIETDVPKCLNTCVKDETWLWHMRLGHVNFDSLKM
MAQKEMLKGLPSIIHPNQLCEGCLVGKQFRKSFPKESTSRASQPLQEIHVDVCGPIKPCLFGKNLYFLLFIDDYSRKTWV
YFLKEKSNVFSCFKKFKALVEKESGYSIKSLRTDGGEFCSNDFNEFCEDHGIKRLLTVPRSPQQNGVVERKNRSILNMAR
SMLKTKKMPKEFWAEAVDCVIYLSNRCPTKGLNDMTPQEAWSGRKPSVSHLKVFGSIGYVHVDDQVRTKLDDKSKKMIFV
GYDQKSKGYKLYNPNEGKMVISRDVEFNEEGAWDWKVNDGEKYDFLPILDEEEERYEDHQEPIVTPPQTPMSSTSSSSSG
SSSSGTPPSPPRKMRSLDDLYEVTNPIDDVTLYCHLATCDPIVFEEAIKDAKWRIAMDEEIASIEKNDTWRLVPRPKGKE
AIGVKWIYKEKKNVKGEVERYKARLVAKGYSQKHGIDYDEVFAPVARLETIRLIIATAAQHRWRIYQMDVKSAFLNGFLE
EEVYIEQPMGYEVKGHEDKVLKLNKALYGLKQAPRAWYSRIDGYFLKNGFVKCPHEYVIYVKIKESGDTLIVCLYVDDLI
FTGNNPKMFGDFKQAMIKEFEMTDIGLMSYYLGIEIKQGEDGIFVNQEKFAREVLKKFKMEDCAKVNTLVECGVKMSKND
EGEKINSTTFKSLVGSLRYLTCTRPNILFGVGLVSRFMETPTMTHFKASKRILRYIKGTVDFGLFYGYSNSFELVGYSDS
DWAGDMDDRKSTTSFVFYMGDTTFTWSSKKQSIVTLSTCEAEYVATTTCVCHSIWLRRLLKELxMPQEKPTKIYVDNSSV
IALAKNPVFHDRSKHIDTRFHYLRDCIANKEVEVKYVKTQDQVADIFTKPLKYDVFAKMRDMLGVMKKSSLRG
>Copia-92_GM#LTR/Copia 45-4494 via tfasty with Copia-74_GM, 77.0% SW:3955, 2 frameshifts and 1 stopcodon. [Glycine max]
MVDSSSATSDDQNKEKEIVAPKDLQRVIFGESHSIQITTFRLNGSNYFWWHQSVQLYICGRGKLGYLNGERPKPDTADPQ
YAVWDAENSMVMTWLVNSMEEDISSNYMCYSTAKELWDSVTEMYSDLGNKSQIYELTLQAREIRQGGNNVTKYFHSLKRV
WQDLDLFNTYKWNSAEDAKHHQQTVEEGRIFQFLAGLNEELDEVRGRIIGRATLPSLGEVFAEVRREETRRSVMMGKIKV
VLPPPETNALAAETTALKSSTNQKNFSNLWCDHCNKPRHTRETCWKINGRPAHLKGNKSGPKVHRPFPTAHEAEKTSLRK
EQVEELIRLLNSNFLSGTPSGSVAQTGNSSTPSSLNCTSNMYVPWIIDSGASDHMTSLSSLFKTYSPCSGSEKIRIADGT
FSAIAGKGDITLSKNIDLKNVLHVPKLTYNLLSVSKICTDSHCSVKFFDTHCVFQDRTSGKMIGSAKMMDGLYYFENTFE
NKEAQGLSGMSSVPVRDQIMLWHKRLGHPSFQYLRHLFPNLFKNVDCSSLECESCVLAKNQRAPYYSQPYHASRPFYLIH
SDVWGPSKITTQFGKRWFVTFIDDHTRLCWVYLMHEKSEVPNIFKTFSQMIETQFDTKISILRSDNGTEYFNKNLNEFLK
NKGIQHQSTCPNTPQQNGTAERKNKHLLEVACAIMFESNVPKYLWGDAVLTATYLINRMPTRVLNYRTPLDTFKTIFPAC
RLHTEMPLKVFGCIVFMHTPSISRSKLDPRAEKYIFVGYSPNQKGYRVFNPITKKLRVSMDVTFLEHQPFFQKNSLQGEN
DNVSEDNFLHLREPLPIPVVHTENTDFIDQTNENKLHNKEDHVETSPEFSKGNPMPDLGGAQAGKEIPQSNKECRVYARK
YPKRTKEQSIISAPSQAxFPEEGPGEIPRELRGNTEIPTSTTELPITIRKGTRSCTQNPKKATTNHPISKYVSYQNLSQN
HKAFTSKITNLFVPRNIEEALDDPNWNLAVLEELGALKKTGTWEIVDLPRDKKQVGCKWVFTIKCNADGSVERYKARLVA
KGFTQTYGVDYQETFAPVAKLNSVRILLSLAANCNWPLHQLDVKNAFLNGELEEEVFMSLPPGFEEELGRNKVCRLKKSL
YGLKQSPRAWFERFGTVVKGLGYTQSQADHTLFYKHSTNNKIAILIVYVDDIILTGDDSLELKNLREKLAKAFDIKELGP
LKYFLGIEFARSKEGIFMNQRKYILDLLKETGLLGCKAAETPMEPNLKLQPAETENMVDKGRYQRLVGRLIYLSHTRPDI
AFAVSMVSQFMHAPGHEHLEAVFRILRYLKGSPGRGLLYKNHGHLQVEGYTDADWAGSVTDRRSTSGYCTFVGGNLVWRS
KKQSVVARSSAEAEFRALAHGICETLWVEKLLQELKVHSSPPIKLYCDNKSAISIAHNPVLHDRTKHVEVDKHFIKEKIE
RGQICITYIPTTEQSADILTKGLPKKSFDNITSKLSMEDIFKPA
>Copia-79_SB#LTR/Copia 38-4474 via tfasty with Copia-26_SB, 3 stopcodons. [Sorghum bicolor]
MTSSALPAAAFLGLAFILVTEKLTRSNFQSWKSQVLSAIKGAQVYKFIQPGAHPPPEFLEPKAKSSTDDGKPDPPVSNPE
YDTWVAKDQQVLSYLLTSLSKEILSQVSTHTTASTAWAAIEGMFASQSRARIIATRMALATASKGSSSISEYIAKMKGLA
EDMTSAGKKIEDEELVSYILTGHDLDYDPVISAIAARVEPISVSELFTQLVSHEQRMELRNGGQQTSANLAARGGRGSNN
NSCGRGGGGRNTSGRGGRTGPGHGNGGQGQNLFQxGVFCHLCGKEGHSVVRCYKRFDHSFTGPPQRSASSATSSYGIDTN
WYMDSGATDHITRELEKLTARDKYNGGDQVHAANGTGMEISNVGHSTLYFPNKELHLKNILHVPRSQKSLVSVTCFTKDN
DVFLEFHPHYFSIKEQATKKTLHSGRCEKGLYPLRLSNNTSSQNKxALSALKPTVSLWHYRLGHPASQVVKQVISHHHLH
CIHESNSERVCDACQQGQSHQLPYPKSVSVSSHPMDLVFSDVWGPAPTSVGRNNYYVSFIDDYSKFTWIYFLRHKSEVFQ
CFRNFQNLVERQFGRKILAIQTDWVGEYQALHSFFQRIGIEHHVSCPHAHQQNGSAERKHRHIVEMGLTLLAHSSLLLKF
WDEAFSTAVFLINRLPSRVIHGETPLERLYKQKPDYSFFRTFGCAVWPNLRPYNARKLQFRSKQCVFLGYSNLHKGFKCL
DPKEGRIYISRDVVFDEHVFPFASLHSNAGARLRAEFSLLPDILKNPSSTFGDALLHDQHLVSPTNPSPSFGLSSDDATG
TNPAQEGSETAPGHRHFMCSPHSNSTRCEGDMTATADGLPSASTSGSVGQNLPTASPAQTQVPAPSPGSSAADTPPHVAV
DGSFPTQTDPLAPGTTSGTESLAILSPGSSTASESGGTGIISTGVDSLPAPAPSPPHRPVTRAQHGISKPKIYTDGTIRx
GMQATTSEAEPLTLEDALGNSKWRGAMDSEHQALMKNRTWHLVPRPKDKNIIGCKWFYKIKRKADGTIDRYKARLVAKGF
KQRYGIDYEDTFSPVVKAATIRLILSVVVSKGWSLRQLDVQNAFLHGILEEEVYMHQPPGYTDEKHPSYVCKLDKALYGL
KQAPRAWYARLCKRLEDLGFKASRADTSLFYYNRGGHSVFVLVYVDDIIVASSSEQATETLLKDLQRDFALKDLGDLHFF
LGIEVQKAPDGIVLSQTRYATDVLKRAGMDKAKPAVTPLATSEKLSLTDGEPLGPDDSTRYRSLVGALQYLTLTRPDISF
AVNKVCQFLHAPTTVHFSAVKRILRYVRGTLGVGHKIKRSKTMLISAFSDVDWAGCIDDRRSTGGFAVFLGANLVSWTAR
KQATVSRSSTEAEYKALANATAEMMWIQKLLGELKVPHPPAARLWCDNLGAKYLSANPVFHARTKHIEIDFHFVRERVAQ
RLLDVRFTSTADQLADGFTKAIPASKLKDFRTNLNLVYA
>Copia-76_PT#LTR/Copia 73-4491  [Populus trichocarpa]
MTSEAYTEHSDIPQPESMFTEFTTKITEALSKIQTLTMTTESPAAPIDIKLNSTNYALWSQVVEMYISGKDKLGYINGDL
PQPSSTDPFFRKWRTDNAIVKGWLINSMDPSLIGNFMRFPTAKMVWDSIATTYFDGSDTSQVYDLRRRVTQLKQAGGSLE
QYYNDLQGLWREIDFRRPNPMECAVDIHKYNTIIQEDRVYVFLDGLDNRLDKIRGDILQLRPFPTVEQAYAHVRREAIRQ
TVMITDNENISGAVLATKGLRLGPINSISNIHHGKQKSRASIEGLKCTHCGNQKHTRENCFKLHGYPDWWNDLQAKKRRD
TATKEAALGTAAVVTTEPHLSFTPPVAHSSSSSDPGNLGCVCFNSPCDAECGAWLLDSGATDHMTFDAKDFIQTSLPRRT
NIANANGVISPVTGAGTVILTDTLQLPNTLLVPSLSHKLLSVSQMTSDLNCLVLMYPTFCLIQDILTKEIIGRGTKRGGL
YYVEDFSMGRAYHMQHSVGIKEKEIWLWHYRLGHPSFTYMKHLFPDLFSQVHHSVFQCETCTLAKSHRVTYPVHLNKKDT
PFSLIHSDVWGPSPIHSIPGFRWFVFFVDDCTRMTWLYLLKHKDEVFSVFKSFHAMVNTQFSAKIQVLRSDNGGEYVNHQ
FHDYFNLHGILHETSCPQTPQQNGIAERKNRHILETARALLINAHAPSRYWTDAVTTAVHLLNRLPSKVLGFQTPLQALA
KHTPLPSVLMLPPRVFGCVAYVHLHKNQRTKLDPCARRCLFLGYAFHQKGYRCYDPASNRIYISMDVTFMETESFFPPNS
SLQGETRQEESKWMELKWPGLVETHMESIQSVCAPHQAANHDGAGPDAAEDTVLEVAVDTETAEDIALEVTEDDGAISSP
SVVPERPTPENDPEVSPLNTNIMESSAGYELPHRHNRGKPPRRYSPDVEERRSRYPIANYVSTQGLPDPLKTFMHDISTN
HVPTGVEEAVKNPKWTQAIREEMEALMKNKTWNLVPLPRGKKTVGCKWVFSVKYKADGSVERYKARLVAKGYTQVYGVDY
RETFSPVAKLNTIRVLLSIAANLDWPLLQFDVKNAFLHGDLEEEVYMDIPPGYSVTMGENNVCKLQRALYGLKQSPRAWF
GRFSLAMKKYGFTQSNSDHTLFLKRQQGKVTALIIYVDDMIITGDDKEEISRLQGQLASEFEMKNLGGLKYFLGIEVARS
NQGIFLSQRKYILDLLSEVGLLECKPVDTPIVQNHKLGIYPDQRLADKGKYQRLIGKLIYLSHTRPDIAYAVGVVSQFMH
CPSEEHMEAVTRILKYLKSSPGKGLIFSKNGNLEVKGYTDADWAGNCLDRKSTSGYFTFVGGNLVTWRSKKQNVVALSSA
ESEFRGMAKGLCELLWLKKLLTEIGFAPKSEMSLFCDNKAAINISQNPVQHDRTKHVEVDRHFIKHNLEAKTIQFPFVKS
EDQLADILTKAVSSKEFHSSLVKLCIRDPYAST
>Copia-75_SB#LTR/Copia 1314-5430 via tfasty with OSTONOR1, 1 frameshift. [Sorghum bicolor]
MTFINTIPPLKGDNYVEWRKKIDMAFTFAEVDWVLDTERPVQPVPPVRATDETDDAWQKREREFAPIQMSYDLEKKKWES
ANKKCKTLVQNTMESHISDSIPVVDSVKDYLDTIKRQFTGSTKTYATEMIKELISQKYTGGGTGIREHILRMSHLASKIK
KFKDLTITDAFLVHLVFASLPKEFETFVVNYNMQPETWDLEKTIAMCAQEEERIKASNGGSINHLRDNKKKIYHSPSKNK
GKGPMQQQGKPSTQHQGQNQSQPTMQHLPQQNQFVVNQNQCLYCKKEGHYKKRCPDWLQMKLRYVGFSSTRTTTRRERHI
RVANGVRADVEAVGDVSLELASGFTLLLRDVLYVPSLQRNLISVSRLDDDNFACHFGDGKCQIYCNNDCVGVAFQQQDLY
LLSLRETVNSVCDATENTSLSQSENRKRKRTQDVSSKLWHCRLGHISRGRIEILVKNEILPPLEFSELDQCIDCIKGKFA
KKIKKNAKRSTGILDIIHTDICGPFPVKSMDGYDSFITFTDDYSRFGYIYPIKERTEALDKFKIFKAEVENQHNLKIKIV
RSDRGGEYYGRHTPYGQVPGPFAKFLQEHGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMISYSTLPLSLWMEALKTAI
HILNRVPSKSVPKTPYELWTGRVPSLSHLRVWGSPAEAKVFNPNIGKLDPKTVSCHFIGYPEKSKGYRFYCPDRYTKFVE
TRHAVFLEDELIRGSMVARKIDLEEKRVHAPTPMIQEPFFELPIMNAPTVPDTVMPETIAHSPVATTDENVEPVLQEPIE
EPVATGEGEQQQPQPDQVPTVEAPRRSQRIRRSAIPDDYEVFNIEEFHMEGDPTSYDEAMRSANSQKWLEAMIEEMKSMN
SNGVWDLEEIPKGAKTVGCKWVYKTKYDSQGNVERFKARLVAKGFTQREGIDYNETFSPVSCKDSFRIIMALVAHYDLEL
HQMDVKTAFLHGDLEENVYMAQPKGFVVEGKERMGCRLKKSIYGLKQASRQWYLKFDETIRSFGFKQNVEDNCVYAKFKN
GKYIFLILYVDDILLASSDVGLLQETKKFLSSKFDMKDLGEASYVLGIEIHRDRKKGVLGLSQKAYIEKVLERYNMHKCS
ASPAPIVKGDRYGDFQCPKNEYELNQMRSVPYASAVGSLQYAQVCTRPDLAFVTGLLGRFQSNPGVEHWKLVKKVLRYLQ
GTKSLMLTYKRSDSLQIVGYSDSDYAGDNRKSTSGYVFTLANGAISWKSKLQTVTTSSTMYAEFVACFEASGQVNWLKKF
IPGLRVVDNISKPLQLYCDNNPAVEYAHNNRSSGAAKHIDIKYYVVKDKIRDHVIKLEHISTEKMLADPLTKGLPPSVFR
EHVAGMGLRESL
>Copia-76_VV#LTR/Copia 220-4341  [Vitis vinifera]
MDSAPLCVKFTGTNYSTWAFQFELFLKGKDLWGHIDGTDVEKPSTFDKSQDVGSSPSWAVLDARIVSWLLGSVEPHIVTH
LRPHRSAQSMWAYLKKVYHQDNDARRFQLEHAIAMFQHGSLSIQDYYSAFLTLWHEYADLVTADVPIAALSTIQAIHATT
RRDQFLMKLRPEYESVRSSLLNRSPVPSLDICFGELLREEQRLSTQAILERSHGSSGTATVAYAAQGRGPPMHSKNLQCF
CCKEYGHIAATCPKKFCSYCKKKGHIIKECRIRPQNRQAQAFQTSVIVPPVATHDSPSAACSVPAPPAPDYCTPEMVQRM
LISALSAMGFQGNNSTKLWYVDSGASNHMTNNPTALCHVRPYAGQSSIQTANGSSLPIAAIGDASSKFTDVFLAPQLSTN
LISVGQLVDNNCAVNFSGNGCVVQDQVTGKPIAKGPKVGRLFPLFLPVPDFSPLSSIKSFACNNVSDLSMVWHRRLGHPN
TQILSHVLNSDLPGNKDRYSLSLECDSCKLGKSKTLPFPLHASRASHCFDLIHSDVWGPSPVSSHEKFKYYVTFIDDHSR
FTWVYFLRSKSEVFRTFTEFLAYVDNQFSTSIKTLRTDSGGEYLSTEFQAFLASKGIIHQRSCPSTPQQNGVAERKNRHL
LDVVRTLLLESSVPSMFWVEALKTATHLINRLPSQVLHMESPYFRLFAKQPSYDHLRIFGCVCFVHLPPHERHKLSAQSV
RCAFLGYNMCQKGFVCYDPTLHRTRISRNVIFFENQHFFPVSSSTVSSSSTVVLPSFEQQFSDLHPVGSRFQPGIVYTRR
SRPQSLSVAHPISDPTTLQMQSVAAPSVRRSSRVSVPPNRYGFPSSSSGNSISALTAALSNFDIPTCYSHAAKHDCWRQA
MQEEIAALEANHTWDIEPCPPTIVPLGCKWVYSVKVRSDGSLDRYKARLVALGNNQEYGVDYEETFAPVAKMTTVRTILA
LAASGDWPLHQMDVKNAFLHGDLKECIYMKPPPGLFPSPTSHVCKLRRSLYGLKQAPRAWFDKFRTTLLQFSFRQSKYDT
SLFLRKSDMGIVVLLVYVDDIVITGSDSALLGQLKTHLSESFHMKDLGSLTYFLGLEVHHSPSGISLNQHKYASDLVATA
GLQGATSVDTPMELNVKLRKEEGDLLADPSLYRKLVGSLVYLTITRPDISFAVQQVSQFLQTPRHLHLAAVRRIIRYVQG
TSTRGLFFPAGNSTRLAAYSDADWAGCADTRRSVTGWCVFLGDALISWKSKKQDRVSKSSTESEYRAMSLACSEIVWLRG
LLAELDFSETDPTPLHADNTSAIQITANPVYHERTKHIEVDCHSIREAFEARVITLPHISTDLQIADIFTKALPRHRHRL
LSSKLMLVDQPASI
>Copia-79_Mad_pol#LTR/Copia 112-3556 via tfasty with ATCopia75, 1 frameshift. [Malus x domestica]
MKARLMLLIQFFLITPIFLVVFLKARRPAPRLSKLVPDLRWIIDSGATDHIVSTPNLLNRKVMKPSMPPVLLPSGESAPI
TSTGTLSLNSYLYLRDVLCVPTFQVNLMSVSRLTEGLQCSVTFFPRWCILQDLATRTTIGLGKERNGLYYLVALASNKAP
SIPRPTCHLAISAADLWHRRLGHISSSRLQFLAKSSLDCPSQFNGVCDACHLAKQTRLPFPISSISTSRPFSLIHCDIWG
PHKIPTMSGAHYFFTIVDDYSRFTWVSLMHHKHETQGLLKSFFSMVRTQFNTNIQNIRVDNGGEFVSLKDFFLEQGTIYQ
HTCVYTPQQNGVVERKHRHILEVARALRFQAHLPLPFWGECIYTAVYLINRLPTLLLSKKTPFEKLYNKFPSYSHMKVFG
CLAFATTVGPTTKFDPRAKKCVFLGYPRGQKAYKLYDLSTEKIFTSRDVVFHENVYPFQGQDHSTTKSIIPTPEPILDLT
SQPQELHDSSTTTPQNPQEPDTSLTPPHDLTIVPSQPQEPHDSSGGTTTSTQPPRTCRRDLIHSHLIDPTLTSPASPPQH
APSTPPPQPIRQSTRLRGPPTYLKDFVCNQAASRGPKQSLSSSSSLTPGTRYPLCNFLSYHRYSPKHLAFISQISRAVEP
RSFAEAKSDPRWQQAMQSEIDALESTNTWTFTTLPPGKQPIGCKWVYKIKHRSDGSIERYKARLVAKGFTQTEGIDYHDT
FSPTAKMTTVRCLLALAAARNWSLNQLDVNNAFLHGDLHEEIYMSPPPGFQRQGENLVCRLNKSLYGLKQASRQWFAKFT
EAVHAAGYVQSKADYSLFTRKCGKSFTALLIYVDDILITGNDEKAISSLKQFLHTRFRIKDLGDLKFFLGIEVSRSKKGI
CISQRKYALDILKDAGLQGTRPVNFPMEQNLKLSDSGEILNDPSRYRRLVGRLIYLTITRPDITYTVHVLSRFMHEPRKP
HLDAALRLLRYIKTTPGQGLYFSAENNLKLRAYSDSDWGGCRLTRRSTTGYCVFMGNSLISWRSKRQKTVSLSSAEAEYR
AMAGTSCELTWLRYLLHDLQLPHYEPVTLFCDNKAALHIAANPVFHERTRHIEMDCHFIRDKIQEGSIVTSHVRSAQQPA
DVFTKALGEVAFTGILRKLGVLDIHSPT
>Copia-78_SB_pol#LTR/Copia 84-3628 via tfasty with Copia-58_SB, 1 frameshift. [Sorghum bicolor]
MCLVDSGTTNSILRETKYFQTLTKREGNVLTIAGRDATIVGSGRATITLPMGTQLTIEDALLYPDSTRTLLSYRDIRKNG
LHVETHEEHKEEFLLLIKDTGQGKQLLEKIPSLPSGIYYTYIKPVPHVAYKIIFQNVNAFQTWHDRLGHPGIGMMRKIIN
NSHGHNLANSKFLESSDFICTVCATGKLILRPSYLKIKSEPLKFLERNSGDNCDPITPSSGPFKYFMVLIDASTRWTHVC
LLSTRNHAFAKLIAQVIRLRANHPEHQIKSIRMDNAAKFSSKAFNDYCMALGIQIQHSVLYVHTQNGLAEALIKRVKLIA
RPLLQNCNLPTTCWGHAVLHAADLLQLRPTAYHTASPLQLVRGNPPSISHLRKFGCAVYVPISPPKRTAMGPHRKLGIYV
GYLSPSIIKYLEPLTGDLFTARYADCIFNEDHFPALGGDYMYQKECPKINWDAQDSSTNDPRTQESELQVQKIINLQNTA
NNLPNAFTYYKGVTKSYHPARNVPERIEVPNKTIQLPPQKPVLGKRGRSKAITQDVAPKCPKRQRKQNNKNSELVNVTQQ
QVERHQVNIQNSHPTSKVHSITDVGTSERPDTIILGNNEPSQGVQEISINYIDSGESYDRKATIVDTYFAETIAEIIQSD
PDPKTMAECKKRSDWNKWKEALQAELASLAKRKVFSSAIPTPSKIFPVGFKWVFIRKRNENNEVVRYKARLVAQGFTQTP
GIDFNETYSPVMSGITFRYLIALAVQNHLSMQLMDVVTAYLYGSLDSDIYMKVPDGIPIPNPKPSRATYCVKLNKSLYGL
KQSGRMWYNRLSEFLLQKGYINNDDCPCVFIKKSQTGFCIVSVYVDDLNIIGNSHDIDEARNLLKTEFEMKDLGQTKFCL
GLQIEHLHSGILVHQSAYIQKTLEKFNMDKSYPSKTPMVVRTLDMEKDPFRPRDENEDILGPEVPYLSVIGALMYLANQT
RPDIAFAVNLLARHSAAPTKHHWTGAKHILRYLNGTKDLGLFYQRNQDPTIIGYTDAGYLSDPYNGRSQTGFVFLYGGTA
ISWKSSKQTLVTTSTNHSEIVALYEASRECVWLRRMINHIQQSSGIGSIESPTIICEDNSACITQMETSYIKSNISKHIS
PKLFYPRELQKNGEIKILQTKSCDNLADLFTKSLPGPMFQNFVHGIGMRRLKDLQVSGGDTL
>Copia-42_BD#LTR/Copia 100-4563  [Brachypodium distachyon]
MSTTPGKGGDLTTAGKYTTPARRAGDDGGSGSGGRRGPKVPIQYPMLTESNYQLWAGKMKILLRHLGVWTAIEDDGVDEE
TDQGAMTAISQSVPDNVMMSIMEHETAKAAWEAIRVSRIGEERAVEARVQSLMRRFDRLVMQDGENVAAFSRRLNALVGE
IRGLGEKLPEKAVVRRLFAAMPRRFSSIIGTIQQWGDMKTMSVAEAIGRLRAFEENEEDSQDMRGTGDEQLMLVSKALES
LLKGKKIVNDASSSSTGGKKANTGRDRAPAQHGKGNDRGKPQKKHRKFDKSKIKCFNCDEMGHFASECKEPKRERAHYAE
QDDGDHGVLMMIEKIEDPVSPVAEKPVVKPCQIATAAEYPAARQPTSCTTEIVLLNEEKVRPRLVGMRERDAWYLDSGAS
NHMSGCKELFHDLDESVGGKVRFGDGSVVEIRGRGKVLFECMNGEHLILTGVYYIPRLKSNIVSLGQLDENGLKTVIVHG
YLWLYDHGRLLAKVKRNWSRLYVLNTTRAEPVCLLVKGSEKEWLWHARFGHVNFRALRDMSRLEMVEGLPHIDHVEQVCE
ACLAGKQHRMPFPKVASYRATAPLELVHADLCGPITPATPGNKKYFLLMVDDFSRYMWIVLINSKDQALEALKKVQIRAE
KECGSKLMSLRTDRGGEFVSGDFGRHCDGLGIKHFLTSPYSPQQNGVAERRNRTIVEMARSLLKNRNVPGRFWGEAVVTA
VYLLNRAITKSVKDKTPYEAWHARKPKVQHLRTFGCIVHVKVVKPHQKKLEDRSRPMVFIGYDPTAKAYRAVEPASNRVT
VTRDVVFEEEKGWNWEQGKESNTDGGDATFTVVWPTMPAAAASRQNPAEAVQETAAAETPAAAGSAAGPSTTTSTLGAPC
KHAGVSTWQEAGSPSSASKDVGCATPTFNTYAAAIDAAAAGVSSGAAPSTGAPPSYSSVGLQGMRPLDEIYDETNEVHAE
YSGFCMLAAEEPSGVEEAMKIPAWREAMETEMQSIMENRTWEEDVLPRGHKAIGLKWVYKVKKNSEGDIVKYKARLVAKG
YAQRHGVDFDEVFAPVARMETVRVLLSLAAHEGWEVHHMDVKSAFLNGDLAEEVYVQQPPGFPSACREGKVLRLSKALYG
LRQAPRAWNAKLDNTLLSLGFEKCPMEHAVYRRREGQKNLLVGVYVDDLIITGSEVEVINGFKDQMKALFSMSDLGKLSY
YLGVEVKQSKNGISVCQAGYAQKILEHFGMGECNACATPMENRLKLSKKSSDPPVDPTEYHSVVGSLRYLVNTRPDIAYS
VGIVSRFMESPTTQHMAAVKHILRYVKGTVGYGCVYAKNGDSEAKLEGFSDSDLAGDIDDRRSTSGMVYFLGSNLVTWAS
QKQKIVALSSCEAEYIAASTAACQGIWLSRLLGELKKQATQKVTLNVDNKSAIALCHNPVLHDRSKHIDTRYHYIRECVE
ENKIEVKHVSTEEQLADILTKPLGRLKFLEMREKIGVQEVKEGIKVRG
>Copia-41_PIT#LTR/Copia 587-4762  [Phytophthora infestans]
MERKTRSFLISTIDDAHVLLVEGCTSAYAIYQKLRDRYEGSSAHGDPYYINHYLMTIKYEEGTDLMAFFIELERALKDAA
EATGIVMTDEQKSLYLYHAMPSSWKPDLAIWKGSKKFIPYTDLKTNIERKVLDDYAKRKYIIDKGSPESRATSNETALKA
VHNAPDGRDDPAPPASACTYCQRPNHAIRDCRVLQKHLRTGTVKEGTVLPANFAIIERKPRDDKTPFPAKHPRYQRSGDR
QRPSGRPDQGSQPWKAPEIYDRFGNPVNYQELQRKYHSREREAGLIAYTTILMPDIGLSATSSDPHDPTWTVDSGCTRHA
AYQESWFKEIRPYAGTIMVGGKQQLPIRGIGDIILEVVDSEGTTRQLEFCDVLFVPDMKFNLLSIAQVLKMGIRLVFSRT
RCTFFVGKNYKLHVELAADMDLFQLRAKTPPKTPPTALVSSDSADDNPVKALVAPPGMDPNVLLWHKRLGHPNFRAMQTM
SKTQAAPELAFTQASAIPKHFCPSCIFAKAHRAPFNSNVDRSKSPLEKVHSDINGPLPYPSLSGAHYFITFIDDYSRFMH
LYVVAHKSDLYDCYEKFRKAAKNRFNTEVSTLETQFNQYDPEVQRLQSDNGKEYEKLGKIIFDRYGTHAQFTNAYTPQQN
GVAERRMRTILERVRALLIDGDLPRQLWGECCQYVTHLINVTTSSVLPKGVTPYELWHGKKPSLAHIKVFGCAAFALIPE
PHRNKLQARARLCRFVGLPQNKKGYRLLSTTENRIIYSRDVTFKEETFPNLTFLERATPDPLSTSLPVQKELLPSLSALL
KRNHASLVATDADVCPSSPKKIKHPDADVVYSKALLLNESIDLEEEQTHRHTIITLLAARYDPEPKTYKDAMGSPHASDW
HAAALSEYHSLMHNRTWTLVPRPHSRKVLQCRWVFVRKRDAAGSIVRFKARLVIKGFQQKYGIDYTEIFSPVVRMEVLRL
LLTLAAILDYEIEQMDVKTAFLNGSLDVEIFMEQPEGFKSKSHPELVCSLDKSLYGLKQAPRVWYYTFAQYLERLGFRRL
IKDRCVFFKVIFNAPCYISVYVDDLLIISPSKQVVARVKSALSSEFHMTDLGGVSYLLGWTIERNRATRSIFIHQKSYAT
KVLDRFNMLGSYPTSTPIIQKLSASDCPDNEADKANMAAMPYREAVGGLMYLMTGTRPDLAYFLREVSQYLGNPGKSHWK
AVKHGLRYLKGTTDFGITLGGVENLELLQSDEYLMAYTDSDYASCQDTRRCIGGYITMFCNSPISWVSRRHHTVVLSTTE
AEYIALCYCMQELMYIKLLLRELGYDSSKPTLILEDNQSCIKICNNPELHGRSKHIDIKYFFVQEKVARKEFTINYCNTT
KMCADIFTKPLAKPSFEKMRELLRVNRPHPMQ
>Copia-42_Mad#LTR/Copia 663-5453 via tfasty with Copia-52_Mad, 5 stopcodons. [Malus x domestica]
MTVPVFKVEGVLGMITIRLREDNFAKWAFQFQSVLRGYKLFGHFDGSNPCPPKFVINFDTGVTNEITVAYLEWEATDMAL
LSLLLVTLFDEAMKYVIGCRTAYEAWINLVDRFASVSKSRLNHLKTELHTIQKWSDTIDKYLLRLKHIRDQLSAACEVVS
DNDIMIVGLAGLPKEYGVIHTVILARESTLTLKEFRALLLGAEREIEGELNVITQNLSALYVQGSSSSSNSGSSSSALGS
NPQSHDHIPAVTAGTITVVPYSSTSSSNADQQSYYHLPESYGYGFNAHSGGQNAPRSHSLNGQFTPQGNQYRGGHDYRGG
NSYRNNNGFRGRGYINSGNTSHSYLGGSRxFGSGNVDTRATVVIECxICNKRGHTAVNCFHMNTNVPVTGFVVECQIYGK
RGHSALDCYQRGNYAYQGQPPSSSLSAMNAQRTSTFVPQDAWVVDSGASHHITSDINALSQVTPFEGSERINIGNGTGLP
IKHIGSTILQTPTHSLTLNKVLHVPDITRSLLSVKQLCANNKSWFIYDESEFFVQDKKTKEIVFQGKSRPDELFQIPVVT
SSRGFQFITRNPEAYLGKAVKNSIWHKRLGHPTHDIVDIMLKQSKILVRTDDTHSACISCIIGKMSRTPFPLRTDKCTFP
FEKIHTDIWGLSPIRSLEGYRYYVIFVDEYTRFVWIFPMSNKSDMFMIFVKFYKFIFNQFGVSIKTLQTDGGGEYTSKSF
TSFLADKGIVQLVSCPYTPQxNGVAERKHRHIVETAITLLTDAGLPSELWYFACAHAVLLINKMPCKSLSFSSPYLSLYK
KAPDLLFLKVFGSAIFPWLRPYNVHKLQPRSELCVFLGYTQGYKGYICYHMPTKKIIISRHVHFDEFLFPAHMINNTKTG
VPQRHKDHQDSTLIPVIVPIPLSRSQQCATHAGSQSSWVQTATNLSSPTSNENMVAFDSSAVQHSQSERQSGESGSTELA
LQGSGPSHTLLSIQDTTHLLHVMDLAQLQVILTSTSSSIDHNSVITGTNSNRIQTRLQTGAISRKSYVGYLASLPQLSSL
QLEELYTDDQSSAISEQFSGGFSFLADITDNEEPKTFKSASTKPEWQRAMQEEFDALKTQGTWLLVPPPSNRSMIGSKWV
YKVKKNPDGTVSRYKARLVAQGYTQEQVLDYSETFSPVVRHTTVRIILALVAQFGWxLRQLDVKNAFLHGEFEEEVYMKx
PQGFVDPTCPNHVCRLVKTLYGLKQAPRAWNSKFTSYLPALGFKSSLSDTSLFVKMDGGDLVILLLYVDDIILTGSNPVK
IQVVIDDLAGVFDLKDMGRLSYFLGLHIHYKDDGSLFITQTKYAKDLLKKASMDSCKPTSTPSKPHAQVLAGEGRLLSEP
SQYRSIVGALQYLTFTRPDISHSVNLVCQFMTQPTDMHMLLVKRILRYIQGTVDYGLHYTQNKHFDITAFSNSVWAADIT
TRRSITGFVVYLGDNPISWQSKKQSTVSRSSTEAEYKALAHCAADIFWIRSVFKDLHQYISDPPSLYCDNLSALALSLNP
VFHSKIKHLDTDYHFVREKVQKGDLTVHYIPTYEQVVDVFTKGLHSPIFLTHCIRLGLGIMTVTNSASAAHLRLRGK
>Copia-44_Pru#LTR/Copia 91-4495 via tfasty with Copia-10_Mad, 85.8% SW:5288, 3 frameshifts and 3 stopcodons. [Prunus persica]
MSESKSTETAPISSDPLTLHNSDTPGLSLVNIKLEGHNYGQWSRSMHLNLSAKNKLGLVDGSVKAPSSNDPKFSIWQRCN
DMVLSWILHSLHPDIASSVLYAKTAAAVWTDLQDCFSQSNDARIYQIRQEIVECRQGPQTISIYYTKLKALWDELASYQE
PFICDCEGLKNLAVREEKERLMQFLMGLSDTYSTVQGSILMMNPLPDTRKVHGLVLQQERQLELTSRHDNLVTPHVMQTG
RSSVAATPSTGWSQSRKSLKCSYCDGDGLLKERCYFIIGFPVGHKWHGKNVKPRNQRFGLTAHNIEVIHSPVQPTAITKT
TPVDGPTFTTEEYNELMAMLRNKKGNSQPLAHATGIITPTCNITQHDPHSTLYWIVDSGATDHISHSAPAHNQTATHHEF
VSLPNREQAAIRNIGSMNLSPDLSLDGVLYVPKFRVTLLSVSKLTRALRCIVIFFPNFCVVQDVDMKKRIGLGKHFDELY
YLTPTQNPHLATHVRRSSTLWHQRLEHPSSAPLHFLSKTIPEIMFHSEHICYVCPLAKQTRLPFTSSSIKTVAPFDLIHC
DIWDPHNTRTHFGARYFLTIVDDFTRFTWVHLMNFKSDTQTILKSFFSWVTTQFNRSIKTLRSDNGSEFLSMRPFFLEHG
TNFQHSCTYTPQQNGVVECKHRHLLNIGRALRFQANLSLQFWGASLQTACYLINRLPTPLLSHKTLYERLHGKSPSYSHL
RVFGCLCYATHLNPTHKFDTRARRCLFLGYLLSQKGYCIFNLETKKFFVSRDVIFHEYSFPFSPSSPNPPTDQPILPTPP
TTSDFFFLPGPVSPSLPSPRLPSLDPAHSDQPNSQPDALPDPNSPISTPPLTSLDGGSGSPIPGLTSPSIAQPSSFLELS
QPHPPPLDSSSLPRRSARVPRPPSYLRDYEAHHTALLTPGVASSSTSRTRYPLHRYVSYSGLSPAYRNYVCNISRLVEPS
SYEQACHDPQWVAAMNSELQALEDNHTWSLVPLPPGHRPIGSKWIFRIKYHSDGSVDRYKARFVAQGFNQREGIDFTDTF
APVAKLITVCCLLTVAAARQWSLHQMDIQNTFLHGDLHEEVYTLPPPGSRRQGEQQVVCRLHKSLYGLKQAPRSWFRKFS
STICGMGFKQSRADYSLFTQVHGSSLTIILLYVDDMIIIGNDEEVICKLKHVLGSQFxIKDLGPLKYFIGVEVAQSKTGI
SICQRKYTLDILEEAGLLGAKPAKVPIDPDITLSSTGELLKDPTRYRRLVGKLIYLTITRPEITYAVNTLSQFMQEPKRQ
HLDAVNHLLHYLKGAPGQGLLFSTxNKLNLIGYCDADWARCPMTLRSVTGYCIFLGNALMSWKSKKQVTIARSSAEAEYR
SMAAATCELTWLRYLLHDLRVTHAEPAKLFCDNQVALYIAANSMYHERTKHIxLDCHTVRERIERGEIKTVYVQTGEQIA
DLFTKPLRAPAFCSLLGKLGVINIHLPT
>Copia-43_VV#LTR/Copia 19-4148 via tfasty with Copia8-PTR, 81.3% SW:4078, 1 frameshift and 3 stopcodons. [Vitis vinifera]
MVSEPTSKLQRVFPVFLTSAMATSSFDSFPIAINATQQIIARLTPTNFPSWHAQFESLLLGYNLFGYVDGTHTCPPLPTS
TDAAATTAHHLWFRQDKLILSAILTSVSPAVIPLIATSQTSYQAWTKLTKLYASRSRTRVMQLKEDLTLMQRGNRNITEY
LHSVKTIADELALIDAPLSQDDITLYVLHGLGSDFRDIVAPIRAxESSLSFEELHDLLLGHEAYLRRLDSTAQSLVVTAN
TTQRRDSRSSKNQSLSTYQQSKNDSRSKSRQSKQYKYPPRCQYCDQQGHIAKYCPKLKPSEATVNCTTTTSSLDKRWLID
SAASHNITSQVSNLQFHSEYDGTDEVIIGDGSGLPITHSGSLTLSFPNRKFQVEDTLCVPTINKNLIFVHHFTKQNNVIL
EFHPTYFLVKDRRTGEILLQGPCENEVYPLPSSPAATPIAFVHERTSVAGWHQRLGHPSFKVVTRLISSFSLPTTSYLSS
SNNCHSCSTNKAHxLPFHKHGLTSTTPFDLLYTDVWGPSPTPSLNGHRYYVIFVDHFTKYVWFFPLHQKSDVKTIFPHFY
KMIETRFNIKIKGVYSNNGGEFTVLxPFFTTHGISHYTTTPYTPQQNGVSERRHRHIVETGQTLLSHASLPSEYWAYAFA
TATYLINRLPSPVLHHKSPLQALFKQQPRYEKLRSFGCFCFPLMKSYNTNKFQKKSVPCIFVGYSTSQSAYLCLHLQSQR
IYTSKHVTFDESVYPFKQVSMPSPTDSSPPETVFFSGPILQLASRELPAITRAQGDIPSASSTPSEDPALVQPQEAPLST
SDQVPLRPSTSVSQPENSIPSSPPPCPRTIITRSMNNIFRPKQLHTTTKHPLPEPPEPSCVSQALKDPHWRKAMSEEVTT
LLQHGTWELVPPTPGQNLVGCKFVFRKKRNPDGTISRYKARLVAKGFHQRPGIDYSQTYSPVVKPATIRLLLTIAVMHGW
PLRQLDINNAFLHGNLEETVFMHQPPGFEDPSQPQHVCKLKKSIYGLKQAPRQWYKALRDALLSFGFIHSATDNSLFIYK
SHDILCYCLVYVDDIIVTSNTLSFVNNIINKLGSTFSVKDMGSLHYFLGIEVIPTPQGLFLSQHQYIRDLLSRTSMENAK
ETLTPMSTTTKLTVQDNSECVDSTEYRKIIGALQYLGLTRPDIAFAVNRLSQFMQKPTTNHWAAAKRLLRYLKQTMFHGI
LLQKHDQFQLKTYSDADWASNTDTRVSTTAFITFIGPNPISWSARKKRAVSRSSTEVEFRALATATSETIWLHSLIKELG
LTLIEAPQMFCDNIGANHFSLNPVQHTRMKHIEIDLLFVRDLVQKGTIRVQHIHTIDQLADLLTKSLSRQRFQLLRSKIG
VADGTSILRGHIRTASI
>Copia-41_MLP#LTR/Copia 219-4253 via tfasty with Copia3_XT, 60.9% SW:1412, 1 stopcodon. [Melampsora larici-populina]
MANPTLTTARIKNPRSESHTRESLTWESKPTTLSYSHEKLDATGVKPLEAPGPLSNYHQWQFVMGTIIRGSPYGYVIREN
QPDPLPSTDEHDRCKVSALILRYVDSSNYEYLSPFEDDPKSQWNALREAHQEASAGSIMFWLKKLITAKMGDQSITAHLD
SMSADYQRFKALVTPQRPLTADSVFATAVSLSLTSDWQPILAPLLQRDSVTLTTVLKVLREEATRRSISSEDPETISSAK
NTKQKEISCTHCSKAGHLIDDCRILKSKLDKYEVLKSEKATSEVSKSKPTKNQVRRAKAAKAKAASASLISSESDVSIDM
NSEISAAAVIKASVGKADGWLVDSGTSQIMTPYSDALINKKPDDMMISLANGSNVKAVSKGLISLPFSDFNDIKSLYVPS
LSEPLLSISKLADKNIVSVFDSEKVSFIKNSQFSGDIIGTGKRQGNLYYLDQKVRQSTSPDKTSRASVADVNLWHLRFNH
PGYASLEKKLSTLNIKVDESDLRKLQTCSICIQGKMRRRNMSSRAGWRSSKPLSIIHSDVSSYSVVSRKGFKYFVTFIDD
FTRFTKIYLMKSKDEVLSKFKLFHNEMTSKVDGVITELRSDNGTEYINKDFTNFCIEKGITQTTGPPDSPQLNGVAERCN
RTVKEKVRCCLIESLLPDSFWGDALEYAIETLNNMPTRTNEKFQSPTSLMGLRERQEHTFHAFGCKVWVHVIKPNSTLKP
RARQAIFLSYLNNNEGAIVWDTEKKQALKATSLVFLDKIFPGLKSNSSSDNFQPKEDNLLPWPSLESNQTPIPTNSPDTD
LNQEAVHTRPIRSRRQPERYGKYGRAAFIESEKDPATYKKAKKSVNWDLWKLAAEAEMESLVGKGTWKLVPRPARRKIIR
CKWIFKTKRNVDMSVYKLKARLVALGFSQIKGIDFSEVFSPTSRQESIRLFLTLMAKNKWKGVAVDIKTAFLNGDLDEEI
YMEHPEGFVNEENPDWVYRILRSLYGLKQSPRQWNIKLHEYLLSIGYIRSSHDPSIYYKKNEDGDIKSMLVTHVDDIAVT
GTDKEIDNFRTLIKKRFEVSSDKPLSHFLSLNISKVKDQKVTVDQTHYISTLEKQFSKFNIKLFNSPNDDTFKTLLPSNE
DDEISECPYSSLIGGLLWVAQCTRPDISFVVNxLSQFLKKPSSQHWNSALRVLGYLCRTKELKLTLGGNDLNPTAYSDAD
WAEDRHERRSTTGYVFMLGVGPVSWRSRKQRTTSLSSTEAEYMAMSDSCREARWLVSLLNELSISKDKVIKLCVDNEGAE
ALAQNPSHHSRTKHIHTRYHFVRQCVADGIVKLVHVSSSRMLADMFTKGLSRLLLTKHRLSLSIF
>Copia-37_PIT#LTR/Copia 41-4762 via tfasty with Copia-107_SB, 57.8% SW:1076, 3 frameshifts and 2 stopcodons. [Phytophthora infestans]
MSWTLPLMSDLLSTPSPTASRRMMAVSAPAVSVAAGLVGPLAGGAGGIPVLQSPQPQSVSALSSPTSTLILTGTPVVNAP
ARSHANEEQQRRIPLPPTNLALDVNKNPPKMAGSFNLYRAQVMAYLHRFNAWGLIDGSVQRPIVNGELQQRYDMLDFFVK
DTLLRGAKVEDAKRMCDLPTGKEMSEDLEAHHTKREFSNYVWVLKQFFHAAYTREQTMDSWLQEIHDTRRVLANLGRVID
DDLTVDVILMGVVQTNRDVVRQFSRIMAPGSRPTLQQVLNTLKSETEMDEIVRDEEEGNSKIMHVAKKQKTGDKSSKHIS
WIKPKGAQSRGAKSSEGGSKANQKSGPGKRKKGKCFYCDREGHHKFECRKLKFDLKHGNVDAEKAKCGNNSGDSSSVYGG
NKGGPPQPLPLGMIGRVENTCAVSSTGSTLLSTFDTSNSLEWILDTAAITHTCADRSLMTQFPHYVETNTPHEPWTGEVT
TEHLVSQLPVSFLSTQDRRGETGEALDCVLTGVRNVVGCHVNLLSVNALEEQGWQCESQYPQDGPPRRLLWKGPTAIVLG
KSRGYYRTRGLCNSPQVVASFVAGGESIFRWHLRFGHVNFATLQQLHRDQMVTGMTMSPSERTRDAMDCLSCTLAKSRRM
SYKNVSPCRSIRCCEKLMTDVCHYGERSVAGNVMFQLVENEYSRYLWGFLLRQKSQCTDNLKTLILQLKQCERPVRFLGS
DQGTEFVNQKLQQVLRDNGVRPLYTNTYTPEENSLVEKMNGVVLRSVRALLVTSGLPTKLWGEAFKYVVAIRNFSPSKAI
KDSTPYELFEGRIPDVSGLRVWGCAATYFVPKQRRKGKQDTTAKDALFLGYPKSTTGYRVLDLVTGHIVESRDVKFREQx
TVAADYVDQLPDKFCAKKPGVVLPVSIPYVRLPLHDYSSSCSSDETALALHSSDEVGPMDAKVGGDVVQETKVRRAGELE
FDNINSGPTKHRRTGELAQTYDTPNCDSTSIIRVDGHENDTRCTKHGEKKRQPGLVEVKRRRKTHTKDPIVTLRRSTPTR
RPNVRLHGFSLANYFISTTDKLPKSVRAALAGYDRDKWWQALQTEFSDIQANHTWILVSRPSDTKIMTSRWVFVIKRNQN
GEIVRYKARLILRGFEQAFGSDYWEVYSPVVSMEAIRVVIVLAFYYDLEPRQIDFTTAFLNGEMDVDVYMEQPELFDDGT
GRVCLLKKSLYGLKQAPPIWNATLERYLVKLGFKSSIIADGVYVKWVDDSPIFLTVYVDDVVIAAKNEGITWLISQLKSE
FKLKDLGEINLLLAMNVKVEPTRVTLSQESYIQHIVEKYGVSQCSCAMDPKVKPMRPSKPYGPDVNRSDLPFRQIVGSLQ
YLVRCTRPDIANAVRVLSKFLDCYTEEHFGLAQRALTYLKGTSSYGLVLPNVSAKGNLSIVGYADADLGNDMDTRRSVTG
QVVTLGGCVVAYQSKLQPSAVKDTCSAELTTASCCADRIRWLQNLLAELQVPVELPALLWTDNAAAVQVMTHSSGHHKIK
CLDLVIYKVIDYVDAGYIVVKHMPSKVMPADALTKPLGKGKFRQHRKxLGVECLC
>Copia-36_GM#LTR/Copia 89-4324 via tfasty with COP3_MT, 81.0% SW:4388, 2 stopcodons. [Glycine max]
MAESAKFHPALTITNVKCLVPVTLDNEQALYYSWAALFTNLTRVHDLYDHIVPPTEEPARAAYLVAKTVDPAMWKRLDAA
ILQWIYGTISSDLLLAILRRDDTAEGAWKRLHALFQDNKASQATLLKEDFTSAIFEEHHTIDSYCNYLQSLADQLVAVDA
PVSNGRLVLCLTGSLPEAYSGTVDFIQNQEPLPSFESCRSWLKMAERTIKARVARESGTRGGTAMVAATSNDSSSAPKRN
NSNNKGHNNNKNKGQGKASGQQGGASSGQSSQWQPRPPAQSQWPQWQPNxGGWTIPPCPFPAYSWQPQPNYTAQRPPAGP
GVLGPKPQAFNVMTPSTASYTPTDIEAAMHALSFSQPDGNYYMDTGATSHMTADASILSSYFNSSTKNHNFVVGSGHLIP
VVGHGSTNLAPPHPPFVLQNVLHAPKLIKNLISVRKFTTDNMVSISFDSFGFSVNDLQTGTRLMRCDSVGDLYPLFSNSQ
ATSPKHSAFTTMSHDIWHNRLGHPGDTIINSLRRNKFIDCNKACKTFCSSCPLGKHAKLPFYDSLSYIFLPFEIIHSDLx
TSPIASSSGHRYYVLFLDDYSKFLWTFPIAKKSQVKQLFISFHALVKTQFERNIKSFQCDNGTEYINGTLEQFFDYHGLV
FRLSCPHTSSQNGKAERHIKSINNIIRTILAHASMPPSFWHHALSMATYLLNILPSKVLDYLSPTQILYQSNPSYSDLRV
FGCLCFPLFPSTTINKLQERSSPCAYLGPAPNHRGSKCYDMSSGKIIICRHVHFVETEFPFSKFHKTTPTNYDFLSDNID
PSIMHVISQNLAPQNPQPDQTSHAAQSRPTPHVAPTLQQPPPTSSPILASPTSCGPVPASTPNPMLHRMTTRSMSGIHKP
NPKYSTNCHATTTKDISPIPKNPVSALHDPNWNRAMSDKFTALIDNKTWELVPKPPDVNVIRSMWVLRHKYKSDGSFERY
KARLVGDGKTQAQGVDCDETFSPVVKPATIRAVLSIAVSKSWPIHQMDVKNAFLHGHLNETGYMHQPMGFRDKNHPNHVC
LLKKSLYGLKQVPRAWYQRFADFVATIGFSHSKSDYSLFIYKNGSDTAYILLYVDDIILTASSDRLRKYFITLLGSEFAM
KDLGPLSFFLGIAVTRHAHGLFLSQKQYAAKIIERAGMCNCSSCPTPVDTKSKLSATDDAPFNDPTKYRSLAGALQYLTF
TQPDISYVVQQICLHMHAPTNEHMSALKRIICYLQGTLSHGLHLYKSTIDRLISYTDADWGGCPDTRRSTSGYCVFLGDN
PISWSSKRQPILSRSNAEAEYRGVANVVSDSCCIRNLLLELHCPIQKATIAYCDNVSAIYLSGNRVQHQRTKHIEMDIHF
VREKVARGEVRVLHVSSRYQIADIFTKGLPRVLFIDFRDSLSIREPPASTEG
>Copia-37_ST#LTR/Copia 215-4753 via tfasty with Copia-6_ST, 88.8% SW:5683, 2 frameshifts. [Solanum tuberosum]
METNRATVDLDQTFNNGQNESTSTPLHVASGQGIDYNHPLFLSPADISGVNIISFQLIGIENYTLWNRSITLALLGRNKV
GLVDGSCMKEMFGEELWGQWERVNAIVLSWLMNSVSKSLLSGIAFASSAFQVRNDLKERFNRIDGSRTYSLHKDIASLHQ
GTDSVSVYYTKLKTLWDEFEALVPALCCNCDKSKGFVAHLNRQRLYQFLMGLNESYHQARSQILMMNPLPTTNHAYAMIV
GDECQKAVVSVTNSMGLNSVGGDSVAMFSKTGTSSGPSQRFKKNSILICDFCHCKGHIKEFCYKIVGYPPEFKSKRKVHG
TSSDSHQLAHFSYGMNTNVPVSGWGRKSDITQVINEAIENSKGHKAMSQAEMKVKHLLQGYTFTKEQYDHILTGFQNKKN
LLTSDCYPAHAAHTAGKTFFVSENSKVWIVDTGATNHMVSQLDMFIKGSVIKLEVPKGVYLPNGNATHVTHVGSCALSDR
SIISNVFYLPEFKYNLMSVSKLTKELGCSVTFFPNCCVFQELYSGKVKEIGEEEGCLYTQKHFGEKEGCLSNDKKDIALS
VDQTASELELWHQRLGHVSSRVLARMFDMNNQSISRVSKCLVCPYAKQTRLTFPSSSIKSSNSFDLIHVDLWGPYSTTTF
DGNKYFLTIVDDFSRMCWISLLKHKYDVSVSIQLFLKFVKNQFAKTIKVIRTDNGTEFVNSVCETMFKEMGVIHQRSCPY
TPQQNGVAERKHRHLLEVTRALRFQAKIPLKFWGHCVLAAAHIINRLPSSVLNFQTPYEKLYDRKPDLSHFRTIGCLCFA
KVLPAHDKMMPRSKAAVHMGYSDIQKGYILFDITTRSFFVSRDVIFREEMFPFSHTDITDCQPVFVDNLQASDFILPDSS
HQAPVTPNCPEDTVTTSPYSEPELEVPAPLTTSQATDIIEAADQEVPVHVVPVDTRRSSRTTHKPLWMRDFVSLNINKDV
KYPLCHYMSYSHLSPTYQCYIAATSSLKEPCTYSDAVKDPRWVDAMQAEIQALEDNHTWEITDLPQEKKPIGCKWIYKIK
YKSTGEVERFKARLVAKGYSQQEGIDYKETFSPVVKMVTVRFIVSLASSRHWHIHQMDVFNAFLQGDLEDEIYMQLPQGF
VSQGEKVCRLTKSLYGLKQAPRQWNHKLTEALVTLKFKQSQYDYSLFINKSEAGICIVLVYVDDMLITGSSLELIEDTKQ
ALQKAFKMKDLGELKYFLGIEFSRSAYGILMHHRKYALELITEVGMTAAKPAGTPIDVNVKLTSRQYDEQVKLRDNSEDP
LADQTMYQKLIGKLLYLNMTRLDISFSTQTLSQFLQQPKKSHMDAALRVVRYLKKEPGQGLLLASSSDELVTAFCDADWA
SCPLTRRSVTGYMVKIGKSLVSWKAKKQTTVSKSLAEAEYRSLASAVSELVWLLGMLKEVGADIKLPVQVYSDSKATIQI
AANPVFHEMTKHIEIDCHFIRERLQQGLIKIDYLPTQEQPADILTKGFSRVQHEHLVSKLGVLNIFTPPSLKG
>Copia-41_BG#LTR/Copia 5-4588 57.3% sim to Retrofit5, SW:1073, [Blumeria graminis]
MSPGSSNHPDNIQNMSTSNKKVILESGVSFSRWKSSLLSKLSRRNVIGHVFQDLEDIIPATRPARPIRLEMDTESSYAEK
EKTYREKVQIWKMGEFEAKDIIMERLPAETWPENHEHLTASELYKDIAQSREATAVAPYVAALESFMSVRFASTVDDYCN
RFLTQYQSLCNSSTAMMEYSQAPADPKINNYKIPKEVAAGMFLIGTKDIEWLSNWRDTKAIGPDNRLTSLETMMSTIRTA
GGNRPQNQPRMLAASEPVDSVDPEAMCLRCRHKHKNRDCFRQHPELRNDERGRGWPQGRGKNVDRRGRLKNVAKAEVKFE
ESSEDESGLNNGTMLSAAGRSKNQFPYLYDTGASHHFFRDPNIFETMRKRASPFKFDQAVGEMSLTSQGTANVKIGKLKM
RLRDCLYSPTSSSNIVSAGKLQRFGNIYADPFKGLLIQYHNGKPHRAVARLDQKNDVTYIRPLYDDNEVSIAAPGVARVP
RTSVTQRWHERLGHTGQTILKRTAECSKGLEGIDASELGTCETCHLSKAQRFISREPRLTPNKPLDEVFVDTVGKLTSST
TGKQYAVILTDAKTRMRWVLTTETKDQIAQLLVQWVKFMHHQYGKRIRTIFRDGGTEFLKTRDYCEEHGIRTDVSAPDTP
EQNGASEAANKVVLRVARSLLIDANMPPCYWPWAIQHACFLVNRLYCLRTKMVPIIDFLKGLEQPHPEKINFTNLPRFGC
RAYKLISPKPGKFEPRAEKGWFMGFQPNSSKNYVIFHPHQTPVKGWKWVESVTPHATFNEDVVFGERLPSADQQKNSSYW
GNERSIFTNPYHPNEDQSDNNISVNQPLYQTQDVHTARPEDHTQSTKQGDQTVIEPETPTSNQAPDVPCISRETWAHLDT
SPKSPPNDDVESQSGSEFQPPDQISNRNKSPVQLNNPELDQGELNIGESDQIPDHQDLNQASPSDQALVQGESTLEMVPE
EKYDFIMTGWDPAPIAGQKRLHSPERSEEVSVKHHGELVRTKRGRLVKKVDYYKLHHGMAARPVRDPTTWEEAMKCSEAR
QWRKAAEEEFRSLKETGAIKIIHRSKLPDGRTPLKCKWVFKKKFLADGSLDKWKARCTAKGFTQRPGIDYHETFAPTPRP
ETGRIMLVLAHQFGWYRRQGDVPTAFLNPDLTIDLFMEMPKGFEKEGCILHLRKGLYGLKQAAALWYDDVKSTLATLGLH
PTHSDVCLYANDQRDLFVLLHVDDFQIMGPSLAKINSIMQALHKKYKLKSIETSKFLGINIKQVEKNTLELSQGQYARNL
LERHGLAECKPATSPMERLMEPNDTQSSAQLRTEYNSIVGGLQYLANNTRPDIAFAVNHLARFLVNPSFEHFHAARRILR
YIAQKPDKGIVFTKGSGKPTLEAYSDADFAADPSSSRSTSGSLIRLVSGPISWKSHMQREVVLSTTEAEYLAATETCRQL
QWVKSLFEELRITNLIEGAERTALYVDNQSAISLIKNHDNHKRSKHIALRNCYCREQYQAGKISVAYVKSADQLADSLTK
VKSPVQIH
>Copia-40_BD#LTR/Copia 35-4374 via tfasty with CPSC3, 1 frameshift. [Brachypodium distachyon]
MAGSHDRSRERSAAGSRSASQRPRGRSPGARRNDGRQIIVQERVVSGVGGGTIVYPELTSTNYVEWAQVMKVNLRAQRLW
SAIDVDDDDEVPEDTDMGALAALIRAVPPEMKGIIASKDTAKEGWDAIKMMRLGVERVREAAAERLRRQLERFAFNDGES
LDSFGMRLSNHVNHMATLGEPVATVMVVRKFLSCVPEKYMQIAISIETLLDLKTLSLEELIGRLRATEDRYALGGSTSSA
AGGQLLLTEEEWETRRKQRQTGRGSGHGQSMGGMGHAQNASGNGRGKAPKQEHARDASGNIDMSKVKCYNCNKMGHFSKH
CKEPRKERKGQQQQVNLAKANGDEPTLMLARACTSDDEPTLLMARVDAPPQDTTGADEFVHLVEERVHLTREGHDNDWFL
DTGASNHMTGHKEVFAELNAGVGGTVKFGDGSLVQIEGRGTVIFACKNGEHRAMTYVYYIPRLKSNIVSLGQLDENGCST
LIEDGFLQLRDRKRRLLARVRRGRNRLYVVTLDIAQPVCLAARRGDDAWCWHARYGHLNFESLRKLASHGMVRGMPQIEH
VNQICDSCLAGKQRRTPFPQVAKYRAQKLLELVHGDICGAIKPATPAGNSYFLLLVDDYSRYMWLTLLKHKDEAAQAIQR
FKARTEIESGNKLGMLRTDRGGEFTAHTFAAYCADQGVARQLTAPYSPQQNGVVERRNQSVVSTARSLLKAKGMPGRFWG
EAVTTTVYLLNRSPTKSLDDKTPFEVWHGFTPNVQYLCTFGCVAHVKPTKPHQSKLEDRSKPMVFIGYEQGSAAYRCYDP
VRDRVHVTRDVVFDEGARWDWEHGKNDHTPGWFTVEFNSMLLPGSAVTASTAETAAATESPAPAMPTAAGFPANSAAATG
PAASPASTATKQADSTIATEVEHPMVTRARAGIFQPNRSLADYVVSHDDDDDDVLQLADVDEPRTYNEASDDVNWKKAME
DEIDSINDNHTWHLVDLPAGQRPIGLKWVFKLKRDASGNVFKHAKGSVQRHGVDFDEVFAPVARLESVRLLLALAAHEAW
SVHHMDVKSAFLNGELQEEVYVSQPLGFVARGEEHKALRLDKALYGLRQAPRAWYAKLDSSLLSLGFSRSTAEHAVYARG
NKKGRLLVGVYVDDLIITGSDEHEIELFKEQMKEKFCMSDLGLLSFYLGVEVKQSADGITLCQSAYAAKILDQAGMTGCN
PCTLPMEPRFKLSKTSTAPPTDATAYRSIVGSLRYLVHTRPDISYSVGYVSRFMEAPTTEHLAAVKHILRYIAGMLHYGC
MYKRRTNEAAVLNGFSDSDMAGDVDTRKSTTGVLFFFGESLISWQSQKQKVVALSSCEAEYIAATTAACQGIWLARLRSD
LTNEQPGSVLLKVDNKSAISLSKNPVFHDRSKHIDTRYHFIRECLEDGRVEVQFIGTDGQLADILTKALSRARFQELRVR
IGVKEIK
>Copia-46_PIT#LTR/Copia 6-4793 via tfasty with Copia-5_ADe, 57.1% SW:981, 2 stopcodons. [Phytophthora infestans]
MSPTMLNKGNGDSEAKKAEVEWNKDGRPVNWNGRNWPLYKRTMMRYLTCYNVEDNGWRLDDICDGSVEYRNTNGNEEEQR
LMRQDQLPAKLIASSLSCTLAQKVMRLDYGSDMWNYLATRFEGRENEMTTLYTQRAVRQKLESASCRPGADVENHLLYMM
GLREQLVVLDADVSDSWMVDFMARSVSQLPFYRVLRTLMLTGGLHTMKTPDQVKSMILVLDKKELVDKQSQVRINPDVRD
EAGGGRQGGRSNGGKPMPKYQNRNKDRSTINSDGSQKYSGYFKRRTDEQQRQYEEDRENKSCFGCHQPGHTRRNCPEEMK
PEPKSQNGSSVGNVRNHANFTHSSGVASREPQGPAQKQEGRAYSREASQSKKGTAKYQQKLEYHNGATQQLAGDKRYFVN
YRDLTLEEQDRATAHGYNGKSTPIGIGSIDLWVNVNDNPVVLRVENVYYSPQRTNLLSQSAATEQGFxTSYDDSTREYTL
NMNGEVALKVQVQPSKLWTFTADNSFLPGKKSEENQSAPKTMINYAISDGVADLQSWYERLGHICPRFVKQMADQNLVEG
MMLRKRDFDMCEACQLGKQRAKTPLKQLDRGVKRRNRLVFADLLFPPSHYNCTRFKAVLVIMDAHTRFKTIYPVQTKQKE
EINALMKRYVVWAERQSPEWKVNEIITDGGGEFENGQITTWYQEHGIIHTVIPPKTSRLNMVERTHQTISGMMKTMMKES
GFPTSFWIEALYYAVYLKNRSLSSSINCTPYEGMWGRRPDIHHIRKFGALVYAHTKVGPSRHKFADNCKIGFVLGYRDGV
LGCKVYFPAEGSVLIAGEITANERVLYKDRHHTDFDRRVRDWVLAERPDLTSAGRHDYDLPVVGGSDGDSSNDTVDTEQH
SSRSVGPSVREPPWLRKPLPSFGNTMAVHPEVGRRKRVSDSIKHIRFAVDDDSEPNTSTCQETVDSSLEEESEDLDQEAE
EQFEYAELIARSLLDDVDENTLSDGSKDGAEKEKKQRLKRGMKEFAEPEEEDLTADEMQVYAALTAIALITETPTQPQQR
TWHISELKVPRTVSQAMNAPQRAEWWKEMEKEVSAMVEKDVLELVPETDIPIGMKTLETMWRFQPKTDDFGNILRYRSRL
CAFGDKEVPGIDFSVLDTFSPVARMASFRLFVALCQIYRLVAHQGDINTAYLNAPKKQLAFIRRIIGFPLKPGWVYKVKN
AFYGLHESGREWYEELHSWLSEKGMERSTTEPCMYFRFEGQSIALLLIYVDHFIYATNNPSWKTTFFADIDAKYGIKDLG
RLGNYLGVQVEWQDDGVLLHQTKYAKDILKRFGFADAVGCRSPMDTTVKLEAAKEGDKEPGLPYREVIGALMYLATSTRP
DLAFPVGYLSRHVQHPNAAHAGALKRILRYLVATSDHGVLFKNQDNEAAEKLEIDGYVDADWGNCPDTKKSVTGYVMMMA
GGPVTxAARRQTIVALSTAEAEYAAACEACQEGAAIKNILSEIVGKSTLTFKLGIDNQAAISLATHPTYSRKTRHIELRL
HYVRDMVRQKGVILWNVKGDEHPANLLTKPMGLTRLDRTKTIIGMKPKISKTRRETEREKYREEVLCGSRVKRDED
>Copia-51_ZM#LTR/Copia 27-4291 via tfasty with Copia-17_SB, 1 frameshift. [Zea mays]
MSTISSTISSSSPATNSSVVPMAANSQSAMASLSHHQAVTIRLNKGNYLLWRAQLLPFLRSTKLLGHLDGTTPAPLMFVA
ASTATGAGQISNPEYERWYNTDQQLLSGLLSSMPEEVLRDVIDAASAKDAWDSVQKRFASSTRARTVQIRVELATCKKRD
MTAADFFHKVRGLATELAAANAALRDDEILAYLFAGLPAEYDPFVTTMTTLPAAPTLDDVFAHLVAFEARQLRHHADLQL
NLGASANYACRRGSHRDRGRSGRGCGAPPRGRGGPPRAGGRGSISRPTCQICEKEGHTALRCWYRMDDSYQEANPFAALA
STSSYKVDANWYTDTGATDHITSDLDRLTVREQYTGGEQVQVGNGAGLKILHIGHSSINTVDRPLVLRNILHVPEIAKHL
LSVHKFCLDNKVFFEFHPWHFSIKDPISRKMLLDGRCEGGLYSLKPSDVADLKQALLSRLSPSRAQWHARLGHPSPQVVQ
SILRLNNIACPPQSDVQVCNACQLAKSHQLPYVSSSHRVLSPLELIHSDVWGPAPQSVGGFKYYISFIDEFSKFTWVYLM
HDRSEASRLFRQFQTHIERLLGTKIKTVQFDWGGEYQKIHNTFFRSLGITHRVSCPHTHQQNGSAERKHRHIVETGLALL
AHASMPIKFWDEAFLTATYFINRMPTRVIDNKCPLERLFKTSPNYSLLKIFGCACWPHLRPYTKHKLSFRSKECVFLGYS
ALHKGYKCLDVDSGRVYISRDVIFDEGVFPFSRSPPHSPSSMPASTPVFHFSAPQLGTNSTNTNYDQIQISLPANPLIAE
VSAPTISTSGIATSTDHLELMPLGSPCPPDPSAPPAPDLLHPLAPDTFAHVCPGAAASADLLAPDDGVPPAASALQPHPY
GTRLQNNIRQPKRRTDGTVAYSVVRTSSSEPTSHTEAMHHPSWRQAMVDEFQALIRNKTWHLIPPREDLNVIDCKWVFKL
KRKADGTIDRHKARLVAKGFNQQYGIDYDETFSPVVKPTTIRLLLSLAVTRGWVIRQIDIQNAFLHGYLHEDVYMHQPPG
FVDSKYPNYLCKLDKSLYGLKQAPRAWFSRLSDKLINIGFSPSKADVSLFILKKQDIRIYMLIYVDDIIIISSSNAVVTR
LLHQLRDDFAVKDLGSLHYFLGIEVRHTLQGVFLIQRKYIQDLLTRTNMLNSKGVPTPMLPKDKLSLQGGTPLSSEDATR
YRSVVGSLQYLALTRPDISFCVNRVCQFLSAPTTEHWSAVKRILRYLHDTIDQGLYFTKSGSSLLSAFSDADWARDSDDR
RSTGGFAIFFGGNLISWSSRKQQTVSRSSTEAEYKAIADATAELIWLQVLLREIGITLSRPRTLWCDNIGATYLSANPNF
HRRSKHVEVDYHFVRERVSTRQLDVRVISMKDQIADIMTKPLPVTSFNSFRRNLNIVTLRPD
>Copia-51_Mad#LTR/Copia 393-5122 via tfasty with Copia-22_Mad, 1 frameshift and 3 stopcodons. [Malus x domestica]
DDSVKLENLLGMLTIKLNDDNFIKWNFQFCSVLRGYDLFDHFTGESVCPPKFLITLELGVTNEISTAYKAWVQTDMALLS
LLIATLSDDAMEYVVGCKTTHEAWTALQDRYMFVSSATVNHLKAELHTIKKGSDNVDKFLLRLKTIKDKLIAAGEKITDN
DLVIAALTGLPADFDTIRTVVLARDTPISLKEFRAQLLEAEKIIEARMQSLVHSMAVMYGNGSVPFSSGGNSAYQSVSHV
SSPSTGSDSTVPQSSNFGFGLVAPDSSNSGGSTSQTCQQFPPHNANVFSEPRNNFGKQGPRSFGHNNGHTSFGNTYSTQS
GHSGYNSSGHNYGNSSRGKGYKGKGNGGYRPKFNGNRSGNYxSGNTTTRPNIVPECQICSRKGHTAVTCLYRTETTPVVQ
ECQICGKRGHIAIDCRHRGNFAYQGAHPPPSLSANYAFQDYPSQFQYPGVPPPIQFPDLSGYQGVSFTTPQVPPDFQASV
NQGQSSLILSSSQDHDVSSDIPALNAQTSSGDGSWILDTGASHHMSPNVNLLDTVIPYTGDKRIVVGNGDGLTVNHIGTA
FLPTSSHTLCLRNVLHVPMLTVNLLSVQQLCKDNHSWFICDDTQFYVQDKATGLILYQGKSNNRELFRIPIHLFPKVLTL
DDSSCSAFVGKAVKSSLWHHRLGHPSNDVLTAMLRSSNISFSHDVPDQPCSHCFSGKMSSLPFVERLDRVEIPFHKIHSD
VWGPSPIASIEGLRYYVSFVDEATRFVWLFPLMNKSEVFGTFVKFFAYVENQFNTKIKVLQSDGGGEFLSTAFKDYPANH
GIVHFISCPYTPQQNGLVERKHRHIIETAITLLTAASLPHKFWYHVVAHAVFLINRMPSKTIGMVSPFQKLFHTLPEISS
LKVFCSAIYPYLRPYNDHKLQPRSTQCVFLGYFSDYKGAICFNRLTHKFFLSRHVLHDENCFPFATTLSDTRCSDTGVSS
TSNLSCPIVVHLDALNLSHSGIDSYVQPHNVSVSSSLSTHGLESTSSPYIVVGAQNHHISSSSVASQSFSMLHVPDSLQL
EADLSQSSSSIPQGIQTRLKTGAITRRDYSALSATFPEVHSLTLHEDTHFSGGFTFIADITDSAEPATFKLASQLPQWQS
AMQDEYDALQTQGTWLIVPSPSDKNIIGCKWVYKIKRNPDGTISRYKARLVAQGFSQEKGLDYTETFSPVVRHTTVRMIL
ALATTYKWSLxQLDVKNAFLHGELNEEVYMKQPPGFVNLQCPTHVCKLVKSLYGLKQAPRAWNAKFTGYLAAVGFHTSSS
DSSLFVKQVGTDVVILLFYVDDIILTGSNTTLIQSVIDDLAGVFSLTDIGQLTYFLGLQIQYKSNGAMFVHQEKYIKDLI
HKAGMDNCKSCATPCKPHSSVLVAEGELLTDPTLYRSLVGSLQYLTFTRPDIAFAVNTVCQFMHAPTDVHLGLVKRIIRF
LQGTMKCGLTFTSGSGIDIRGYSDSDxAADVNTRRSITGYVVYLGANPISWQSKKQSSVSRSSTEAEYKALAHAAADIAW
IRLILCDLCAIVSNPPLLLCDNQSAIALSLNPIHHSRIKHLETDFHFVQERVQKGDM
>Copia-52_VV#LTR/Copia 152-4271 via tfasty with Copia41-PTR, 85.5% SW:4762, 1 frameshift and 2 stopcodons. [Vitis vinifera]
MASENFVQPAIPRFDGHYDYWSMLMENFLRSKEYWQVVSGGIAEPATNSPMTDAQKTEIEGQRLKDLKAKNHLFQDIDRS
ILETILCKDTSQQIWDSMKKKYQGSTRTKRQxLQALRSEFETLRMKPGESVSDYFSRTMAIINKMRIHGEKMEDVTVIEK
ILLSMTPKFNYVVCSIEESKDLDELSIDELQGSLLVHEQKIIQEDKEEQALKALTNNNALTMNRSTDRGRGKGRGVRGVR
DGGRGRGGRGNFRVDEDQPDFQNRGRGQNQQFDKSKVECFRCHKFGHYRSECYTKLPNDKEKGEKSNYAEKKEVETLLMA
AQVNEQPQAKVWYVDTGCNNHMCGSKSSFCFLNESFRSTVSFGDCSTVNVMGKGDINIRTKNGFVETISNVFYVPDLKSN
LVSAGQLREKGYIITIQKGACEIYDPSRGAIAVVQMASNRLFPLKIDSVQSFLMAEVKDLSWLWHLRYGHLNFGGLKTLQ
QKHMVTGLPQISIPSQVCEECVVGKQHRSQFPQGKSRRAKNILELVHSDICGPINPTSNGGKKYLIIFIDDYSRKTWVSF
LQEKSEAFSAFKSFKARVEKETGRSIKILRTDRGGEYCSNEVEHFCDDQGIRRELTAAYTPQQNGVSERKNRTILNMVRS
LLARGKIPKSFWPEAVNWSIHVLNRSPTFSIQNMTPEEAWSGRKLAVDHFKIFGCIAYAHVPDEKRKKLDDKGEKCVFLG
VSEASKAYKLFNPLTKKIVTSRDVIFDEESTWNWNGQQPTQVIFDNDAEEERQQLLQQQIPTVSILESPPNDASTAAETS
STALESNVVAESRLRRVRKRPTWMQDFEVTGVQSDNYDTIAHYALLSDCDPITFQEAIKDLKWHKAMNEEIGSIEKNNSW
ELVELPKRQKSIGVKWVYKTKLNKDGGVDKYKARLVAKRYKQEFGVDYKEVFALVAKLDTIRLVLSMAAQNSxSIHQLDV
KSAFLHGELEEEVYIDQPPGYVKQGYENKVYKLKKALYGLKQAPRAWYSRIDAYFTEEGFIKCPYEHTLYTKYGVDKKIL
IVCLYVDDLIYTSNNKTMLADFKKSMMKEFDMTDMGLMHYFLGIEVVQSSAGVFISPKKYALEILDKFMLKDCNSVITPS
EVGLKLSKSGAGKRVDSTLYKQIVGSLMYLTSTRPDIMHAVNLISRYMENPTEVHLLAAKRIFRYLKGTVDFGILYKRGE
KSNLIGFSDSDYAGDLDDRKSTSGAVFMLNSRAITWSSKKQQIATLSTTEAEFVVAASSSCQAIWLRRLLEVLYNQQQGP
TVIYCDNLFAIKLSKNLVLHGRSKHIDVRYHFLRDLCKDGVIDLVFCKSEDQIADILTKPLKPAVFMKLRSMLGVCSSKE
VVAASGKALQIDS
>Copia-55_Mad#LTR/Copia 509-5007 via tfasty with Copia-88_Mad, 74.3% SW:4276, 1 frameshift and 2 stopcodons. [Malus x domestica]
MSTSVKIESLLGMLTIKLNDENFIKWSFQFCSVLRGYDLLDHFTGESVCPPKFVLIPDLGVTNEISITYKEWVKKDMALL
SLLIATLSDDAIEHVVGCKTSYEAWTALQDRYMSVSKASVNHLKAELHTMQKGGDSIDKYLLRLKGIKDQLQAAGEKVCD
NDLIIAALTGLPPDYDISRMVMVAIAGNGFSSNSNNGGNQGQRYFGTSSNSYRPKGNGGYKQRFNGSNRGNSWQSWSGNT
SNRFDAIPECQICSRKGHVAVTCLYINDNGQPIQECQICGKKGHIALNCRHRSNYAYQGTPPPASLSANYANQGFHPQNP
SYVSLFPTASQYISPSNFPQFTQYSTQNPAVPYSFQIMPKGNLPSPQPFFPAMTAQNSNESAGGDSWIVDTGASHHMSPD
VTVLTRAAPYEGTEKIVVGNGEGLDVKHIGHGTLQTQSHMLHLKNILHVPMLTVNLLSVKKLCANNHSWFICDESQFFVQ
DKATGVLLHHGKSSNNELFKIPVHVFPTVMTSGAISQASDFLGHAVKSSLWHQRLGHPSNDILATMLKHSNISCTTDDNS
SICSHCISGKMSRLPFLDKIDKVDIPFYKIHSDVWGPSPTISLEGYRYYVSFIDEATRFVWIFPLINKAAVFGSFLKFCA
YVDNQFHARIKILQTDGGGEFMSNVFKTYLDNNGILHHISCPSYTPQQNGLAERKHRHLIETAITLLSVAKLPQRFWFYA
VAHAVFLINRMPCKILKMDSPFSKLFGQQPELGSLRVFGSAIYPYLRPYNIHKLQPRSTQCVFLGYSSGYKGALCYNIVT
GKVIISRHVLYDENCFPYKDLEPIKSSIQSQSPDIQSSRPIIVTLPSPASIPHTESSHQFNSPGVHHSSTSTSATVSSHR
LSSSSQDSGSNATNSSNATLSNSTPTLPVLQSSQLQVVLPSLASPIAIPSQSDSLPQGIQTRLKTGTISRQDYSALTANF
PEVQSLTLSENSPFSGGFTFVADIVDASEPTTFKQASQIPQWQVAMQEEFDALQTQGTWVLVPSSSGKNVIGSKWVYKIK
RNSDGTISRYKARLVTQGFSQQKGLDYTETFSPVVRHTTVRLILALAATHKWDLRQLDVKNAFLHGDLQEEVYMKQPRGF
VHPDYPTHVCKLVKSLYGLKQAPRAWNNKFTSYLQAVGFQTSLSDSSLFVKKSGDDVVILLLYVDDIIITGSSSTLVQSV
IDTLGAIFDLKDMGKLAYFLGLQVEYKTNGDIFVNQAKYVKDLIHKAGMDDCKPCATPCKPHNQVLTTEGTLLSDPTHYR
SLVGTLQYLTFTRPDIAFAVNTVCQYMNSPTNVHFGMVKRILRFLQGTLRCGLKYTSGTSMALSAFSDSNWDADLNTRRS
ITGYVVYLGENPISWQSKKQASVSRSSTEAEYRALAHTTADIAWIRLILRDVHQFLSSPPLIHCDNQSAIALSLNPVQHS
RIKHLETDFHFVRERVxKGDLVIQYVSTKDQVADVLTKGLHGPDFLHHCFNLKLAYPSxD
>Copia-53_SB#LTR/Copia 52-3913 via tfasty with RIRE5_OS, 3 frameshifts. [Sorghum bicolor]
MRPPPLKDGGSNYKIWRSRCTLWLTAMRCEHAIRGRRTEPPLSPEEESKFCEADNLLKLSLISVIDEGMVPLYMDMPTGK
DMWDALQAKFGVRDAGSELYLMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNKCVLPHKFVADGIIAKLPPTWRDFATS
LKHRRQEFSVTDLVASLSVEENARAKDTRGKKVQTEGGTSANLVQRRDPQSFRNRKNKNKNPNVRPQPQAFKKKANKEKK
GGCCFVCGSTDHWAKECPDRKDKQQKKTANIVVSEAGGSGYGNYIPTTLSVCHSPDWWVDTGANIHVCADRSLFSLYQEG
RGASLLMGNGTHAVVHGVGTVNLKFTSGKTVQLKNVQHVPSIKKNLVSGSLMCRDGFKLSFESSKCVVSRYGTFVGKGYE
NGGLFRFSLMDSCNVVNHVRHDDDCNIWHSRLCHINVGCMTRLAKMSLIPKFDWVQGSKCHACVQAKQPRKPHKFVKEAR
NTAPLDLIHSDLCEMNGVLTKGGKKYFMTLIDDSTRFCYVYLLKTKDEALHYFKIYKAEVENQLEKKIKRLRSNRGGEYF
SKEFDSFCEKHGIIHERTPPFSPQSNGIAERKNRTLTDLVNAMLDIAGLSKEWWGEAILTASHVLNRVPTKNKEKTPFKE
WEKKRLTLSYLRTWGCLAKVNVLFNKKRKLGPKTVDCVFLGYAINSVGYRFLVVKSRVPDMRVGGIFESTDATFFENEFP
MRGNVPSTSSEGAPDAPDTFVPVEYTEQPTTESLEEENDGVARKSKRPRIAKSFGDDFAIYLVDDTPTTIKEAFSSPHAD
YWMEAIRSEMDSIMSNSTWEVVDRPYGCKPIGCKWVFKKKLRLDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI
RVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGFIVEGQRGKVCKLLKSLYGLKQAPKQWHAKFDKTMTSVGFV
VNEADKCVYYRFGGGEGVILCLYVDDILIFGTNLNVIEEVKNFLSKNFDMKDLGVADVILNIKLQKGENGGVTLVQSHYV
EKILSRFGYSDCKPVSTPYDPSLILRKNKRIMRDQLRYSQIIGSLMYLASATRPDISYAVSKLSRFVSNPGDDHWRALER
VMRYLKATASYGIHLEGFSDANWISDADELKATTGYVFTLAGGAISWKSCKQTIITRSIMEAELAALNTATVEAEWLREL
LMDLPVVGKPVPAISMNCDNQVNSSKDNLKTTRHVKRRLKSVRKLRNSRVIELDYVHTSKNLADQFTKGLSRNVIDSGSV
EMGLRPT
>Copia-49_GM#LTR/Copia 184-4293 via tfasty with Copia-93_GM, 82.9% SW:4252, 1 stopcodon. [Glycine max]
MNGNGGFNTHLPVFDGKNWSRWSIQMRVLFGAQDVLEFVNDGVPDLEENATEAQRNLHREKKKKDQKALFYIHQCVDAKI
FEKIGESTTAKAAWDTLVRCYGGDATVKKVKLQSLRKQYENLNMKHNEKVADYVSRIITVTNEMKTCGETISEQMIVEKV
LRSLTAQFDHIVVAIEQSKDTSTMKIDELQGSLEALELRVIERGNGKETDQALQAASKENWREIKKKQWLDKKAKQNPNS
SDKDKGKSLADKAESSNKGGYNSKFNKKKNFDKRKIQCYNCDRFGHFADECWSGAGKWKKPEKGTEQANLAQDSSDTEPV
MLMVTTNDEGVVVDWWYLDTGCSNHLTGNRQWLINYDSSKESRIRCADDEYLVAEGMGDVLVKLKDGGTVLIENVWYVPG
MKSNLMSVGQLLEKGYSVTMRDAVLQLFDNSDKLVLKSKLSRNRTFKCNVKDSGVKVLSTVTESQSWLWHRRFGHLNFKS
LTQLSEKELVTGMPKIGVCDKTCDVCLKGKQTRLPFADQSPMRASSPLHAVSSDICGPIEVPTLGGNKYFITFIDEFTRM
IWLYVIKQKSEALEVFKKFKAVAETQSGQKLKILRTDGGGEYTSKAFEEFCEAQGVVHEVTPPYTPQHNGLAERRNRTLL
DMAKSMLKQKNMPHEFWGEAVTTSAYILNRCPTKSLKLKVPMEVWSGKKPSVSHLRVFGSLCYNHIPDVKRTKLQDKSEV
MVLIGYHSTGGYKLYNPKLKKTCISRDLLIKEDESWDWEIGEVKFKAAPEIDICSDSESDDHSAAEVNNDGVNGVVAPND
DVPGDVVHDVPATPAVRPQRxKQLPRRLQDCEVLPDSAVTDEGDLIHFALLADAEPVNFTEALKISEWRAAMEDELRSIE
RNHTWDLVQLPKNKKPISVKWVFKLKLDPEGRIVKHKARLVARGFLQKQGVDYTEIFAPVARHETVRVIVSLASNKGWSL
THLDVKSAFLNGALEETVFVTQPPGFELEGKEEMVYKLNKALYGLKQAPRAWNRRIDAYLAQLGFKRCVVEHGVYVMLKE
DNKVLMVCLYVDDLLVTGNHTTEIDNFTSLMMSEFEMTNLGKLSYFLGLEFLWTEYGIVMHQRKYAGEILKRFGMEDCNV
AITPAETNQKLEDKPEEEGVDPTGYKQLVGSLRYLCNSRPDICYAVGVLSKFMNRPKKSYFLAAKRVLRYVKGTMQYGVM
FPSSVDGAEMKLIGYSDADWCGDRTDRRSTSGYLFKFGGAVVSWSSKKQPVTALSSCEAEYISGSFAACQAIWLKSLLDE
LKCEVQMPLSLLIDNKSAISLAKNPVSHGRSKHIETRFHFIREQVNNGVLKLIYCPTEDQLADLLTKAVKPDSFIKLREE
IGVICFEDLN
>Copia-46_VV#LTR/Copia 1372-5397 via tfasty with Copia-84_VV, 74.5% SW:3194, 3 stopcodons. [Vitis vinifera]
MTFMQLFIENISYFCSANMSNPIFSLLASQVLTGENFVKWKSNMNILLINENYHFVLKEVCPPVPPANASKAVSEEYNRW
IIANNKACCYLLAAMDEVLRTKHEGLETASEIMESLQQMFGRPSEQARHEAVKAVMNSKMKNGSSVCEHVLKMIHHFNEA
EINGAKIDENTQVGMILETFSPSFLQFRTNYIMNHKKCNLTEFLNELQSYETLIDDKEGKTNIAKANAVVGKASSSRNKK
KRNVRNQKDKKKIQKKKRKAVEPKPKGKCFHCNQDGHWKRNCKKYLDELKQKKKQGKLDLLVMETCLVENDFSSWIIDSG
ASNHVCISLKMLESSKDLEEGAFMMRVGSGARVSATAVGTVRLSFANNKYLLLHNVYFIPDFKRNLISVSKLHEQFISVS
FDVDSVSIYKNGMNICSGYVDNGIYFVKPIFNNLLQTEMFKVAEPTPKRRKISNDKNDTYLWHLRLGHINIDRIERVAKD
GPLRELKVGTLPVCESCLEGKMTKMPFSAKGERAKVPLEIIHTDVCGPLNVKARGDYEYFVTFIDDYSRYGYVYLIQRKS
EAFEKFKEFRAEVEKQLSKSIKTLRSDRGGEYLVYEFKDYLIENGILSQLTAPGTPQxNGVAERRNRTLLDMMRSMMSYS
SLPTSFWGYALQTVVYILNIVPSKSIPNTPLELWNGRKPSLRHIRIWGCPAHVLKGKIGKLEPRSEVCMFIGYPKGTRGG
LFYSAQDNKVFVSTNATFLEYNYMADFKPRSKVVLEELLVDEISPTPTTVVERQRKETTARDLTPPPPxRSGREIRLPIR
YRENREAQVAVTDGSDDDPLTFKMAMDDVDQEKWQEAMKLEIESMYSNSVxKLVDLPEGIKPIGCKWIYKRKRGPNGKVE
TFKARLVAKGFTQKEGVDYEDTFSPVAMLKSIRILLSIAAYYDYEIWQMDVKTAFLNGHLEETIYMVQPEGFVVKDQEQK
VCKLQRSIYGLKQASRSWNIRFNEAIKSYGFEQNLGEPCVYKQIGGDKVVFLVLYVDDILLIGNDVESLSKVKNWLASQF
QMKDLGEASYILGIQMTRDRKNRLLALSQATYIDKVLVKFAMENSKKGNLPSRHGVHLSKEQCPKTPQNEEKMRRVPYAS
AVGSLMYAMLCTRPDICFAVGVVSRYQSNSGLDHWVAVKHILKYLRRTRNYMLVYSGRELIPIEYTDFDFQLDRDSQKST
SRAVFTLGGGAIVWRSVKQTCVADSTMEAEYVAACEAAKEAVWLREFLKELEVVPNMHEPIRLYCDNSGAVANAKEPRNH
RKGKHIERKFHLVREIVSRGDVLVEKIASANNIADPFTKTLPARSFEQHLEGMGLRDMPHLL
>Copia-46_SB#LTR/Copia 51-4370  [Sorghum bicolor]
MSDRSGVAGGGDRGDRINYPALTATNYTSWSIRVKAIMEDQGVWEIVEPSGETSERDATAVAAAKAKDRRAKACLLQCLP
DDILMQVAAKKTGKEVWDSLKARFVGEERVKEARLQTLKSEFDALRMREEETIDVYAGKLTSMSVRYGNLGGSLDDAALV
KKMFDTVPDRYINVIAGIEQFFDLKKLAFDEAVGRLKAFEERTKKGSSSARTSDGQVLLTQAEWEARQKKMSGENSGGGR
GHGSSRGRGRGRGGGNSGRGTQADGAKDGSGKKDKSHVKCFKCHLYGHYANKCPGEKKKEEEAHHVKKVEHEPTVLLAES
VESGQSVQELAERLQGRVEVCLNEMHLNPELHFTGSEELCGDVWYLDNGASNHMTGDRQKFRDLDTTIGGKVRFGDGSSV
EIHGRGSILFQGPSGDQWILNHVYYIPKLKSNLVSLGQLTEIGYRIVLDDDLIEVVEKSSGRVIMRVHRSVNRLYKVDLE
SVEPVCFQASVGDQSWLWHGRLGHVNFKSIKMLAEKEMAGGVPLIKHPDQVCHSCLSAKQTRKSFPQCAMWRADEPLELV
HVDLCGPITPETAGGNKYFMLIVDDSTRWMSAFFLKTKDQAVSAFVRYKAVAENSSGSKIKVVRSDRGGEFLATAFREVC
EQAGIMRQFAAPYSPQQNGVVERRNRTVMEMARSLLKSMKVPGCFWAEAVKHSVYLLNRLPTKAMGLRTPFEGWTGRKPQ
LGHLRVFGCRANVRPAEPHLKKLDDRSVGMVYFGVEDGSKAHRLYNPQTNKIIVSRDVIFEEAVSWKWESEFGENSDFIV
EDNSELFSQPWTGGQDVENHHGVQNSGGVDNLGGVQNDDDTFDVAAVPVESGETSQTTTVHGQTTETDVSVDAGADHDYA
EMDVDGTIDIDDGPVRFRNLNDVYQDSVEVELTSDTEIDALLTVMEEPNCYKNAAGDRDWVAAMDSEIQSINKNKTWELV
ELPAGHKPIGLKWVYKLKKNAEGEVVKHKARLVAKGYVQKHGIDFEEVFAPVARLDTVRLILAIAANRNWEVHHLDVKTA
FLNGELAEDVYVSQPEGFVKKGKEQMVLKLNKALYGLKQAPRAWNIKLDSSLKKLGFKKCLTEPAVYIRGHGLSALMIGV
YVDDLIVTGGKLAEIVAFKQEMTSVFDMSDLGKLSFYLGIEVEQKEDYIAIKQTGYAKKVLSQFGMTDCNSTKCPMDPGV
KLDADKQGERVDATHFRRIIGCLRYLLHTRPDLAFSVGMTSRFMEKPTVKHLNAVKQILRYLKGTLNYGLVYTQEKKEEL
LVGYTDSDVGGDVVNRKSTGGMAFYVNESLVTWNSHKEKTVALSSCEAEFMAATAAAKQALWLRNLLSELTGTQPKVVTL
MVDNNSAIALMKNPVFHGRSKHIDIKYHFIRECVERGQIVVKKVGTLDQKADSLTKPLAAVKFAVMKHLLGVRELEDHQA
>Copia-48_BG#LTR/Copia 511-4656 55.7% sim to Copia-79_Mad_pol, SW:978, [Blumeria graminis]
MIANTHKPSSAIPYRTSFNKLMNTKLTSSATHYCNKFQQNLSNFRNAAANLETTVKNSTKYGITDGMASMMFFEGTSHID
WLETWRATGAVDRDNQTYASLDQMMATLRSVSGDRHAQPQHVKVAALSIGRRDDDLCYIHPKLNHTNKECRVQHPELRGV
LKNRYKEHSGHSNAVIAQDYENDDSSPLAMTVFPPSLIRAASASGISITRDSFIWDSGASNHFINKRSAFSSLNKLETPF
TFDQAIDKTSLNYAGTALIKIGKLDLLLGDALYSPKSSINLISAGRAFRLAKISEDRKAGLLIRSVNGRQTPVARLATIS
DISIIVPLSDTSPHSSNSIKLAAPLLAKPAISKLTKCSSADRWHQRLGHVGPLIMSKTKNFAQGLGALDTSDLSHCEACH
LSKAQRTVVREPRPIPFEPLDEVFVDMVGPIDPNIYNQAYAVIITDATTRMRWWFGAVKKDEIPDQLIEWVSAIKNQYGK
TIRICFSDGGTEIQKNTRWQTIAREKGIRQDISSPYTPEQNGVAEAANKVIITRARCLLIDAGMPVCFWFWAINHAIYLT
NHIYNLSTSDVPILHFNKGLNIAHHKLLDFRCLPRFGCKAYQTLNKPEKGGKFDPRAQIGWFVGFQANTTKNAIILSPHK
TPQHEWSWKVFNTPHASFYENCMYGPTMAKLNESTPLEYHSGGGLGFYYPGTTENDLIPPPTPSSNLTPSPSTPLPPSPL
PESSIDEQPLEGEPEIHESSSQGEPENTEKYEDHASQHDDPSDHEHSHNIYDTSMTPFEPPTYVGQKRRHSSSPEPLPTS
NLVPISSVENDHLQQEDEVNYDTLMTPFFPPSYSGKKRIHSPSPPSSPPSSTMITSRGRTVKRHDYKRLNSGRAVKIHSA
YTDPKSWTEAMTRSDADMWMEAAESEMQSLISTGTAIIVDRKEVPRDRNMLTGKWVFKRKTNADGSLDKYKARWTARGFT
QLKGLDYFDTFAPTPRAETTRLLLALGHHLGWHRIQGDIPAAFLNPNLDVVLFIHMPQGFEQKDKVIRLEKGLYGLKQAA
ALWHDNAKSELHNQGLEATESDVCLFSNKEKDLFVILHVDDFQILGPDKKKIVGLARALKEKFDFKIVTSDQFLGIFVSH
EGENLKLSQGSYARELLSRHGLADCKPATTPMERRMEPSSEPISAERVTIFNQIVGGLQYLSNQTRPDISFATNHLSRFL
TNPSEEHLTAARHVLRYISKDPDSGLIFTKDQSPVLEAFSDSDFAGDPSTARSTTGSLIRLGGPIYWRSHLQRDVVLSST
EAEYLALTETTRQVTWTRNILEEIGLSERIKGSNCTSIFVDNQAAISLTKNHDNHKRSRHVNVRNHYCRQQYHRGLIDIH
YIPTGKQQADSLTKPVSTVRIE
>Copia-49_BG#LTR/Copia 186-4967 59.4% sim to Gypsy-26_BG, SW:1984, [Blumeria graminis]
MASSSLVPGKSSDKDGRNQFIIEQIEDYKTGDYTDSDLSGYFGDSFKDWKITDFELCNYNKLIQLRKVLRDHGVYVDTGR
TKPEVIEALMAAVKEEIPWPSPFIKRGLQSFEKREDESSSTKPLRKASSFEPRRKVEEEALEADSKNPSFNFQYQRAPFN
PQPKRPTLFSSNEPQSRTRPMDFAPQFNNPIQNISYDRELGTFLKFYSSNDLKYSGQPNDSIRFKYNIFLDNCARASLPR
TAYRNAFPTMLTGGALKRYFSTCQNFQSHEEIFHSLQSYFENDEHRRSMFRQWQNCSLKGFSKKNPDKTLTETLRLMIAH
LEELQYCLSEEHQGERSMYNRLIDACRYEPACRLACFRPPASLQGLINDLLSSVATFEDIQDTSQDPNEVLLVDRRYHKT
GNTSQYEMPIKYRSQPFGDPKYKKSPFNKNQPSQAMASRSCYVCGAKGCWSSNHSEAERQRSRDNFKEKLNLRVEKYFMD
ADDDCDQETDELRREIDTLIIDATNEHVEDDKNEAEQFFTSFGPIDDVTAKHMIADLNNQSFHHAVSGSQQHGATKDPFT
YIAGSRYTSSSFFGVMIDTGASECSTAGYGQLMALKKLIKIDMDTVSAGRVNVQFGIGATSSVGSIDLSTQIGVIKFHVI
HADTPFILCLKDMDAMQVYFNNTNDTLVQGNREYPVLRKFGHPFMLLPFCATSSTFLNTNELRQLHRRFGHPSVNRLARV
LERSGHEDQSQSHRRLLQHITKLCHFCQKYGKSPGRFKFNIKGDIDFNHSITVDVMYINGDPVLHIVDEATRYQAARWLN
NLTTSATWNAIRQCWIDVYIGPPDIIVHDSGTNFNSEEFRQSSSSMGIVTKCVPVEAHHSVGSVERYHAPLRRAYFIISE
ELSNEGSSKAQKELMLQMAVKAVNDTAGPDGLVPTLLVFGAYPRMTPIDPPAPSIIQRRKAIQRAMIEVSKLKAKRQVTE
ALRQRNGPCINQIHEQHIGSDVLVWRVHDQKWQGPYQLVSINGESCTVNLPSGHTQFRSTAVKPYTGDNAPCELTEEAPM
QSEARRNPSRSRRIPSRYREAILTNTLVLNKEGLISTEKPTNFEDSRRKELNGLLENGVFEIIDEKNVPKGSRIFKTRFV
DEIKHEGTHEAYHKSRLVVQAYKDTGKREILTQAPTIQRASQRLLLCLAMTIPDMKIALRDISQAYTQSKTQLMRDIYVK
PVSELGMPSGTLLRVIRPLYGIPEAGTHWFNTYHKYHIKKLGMITSTFDTCLLTCLLHTKTEASDYNTFGIVGLQTDDTL
IVANEAFLEMEQKEIEKSRSLHKPLETLSEDRSINFNGGILTMFNGNIKISQERQAGRIKEISTDMPADYLKAHFVAQRA
RGAYVATMSQPEASFALSQAAQASQPTTDDVKSLNKCLAWQISNKKNGIKFVKLDIKSIKVVVFTDSAFANNTDYSSQIG
FVIVLADDKNRANLVHWTSIKCRRVTRSILAGELYGLGHGFDMGSVIKATTEKILKPWHPSPVPMIICTDSQSLFDCIVK
MGTTHEKRLMIDVMCLREAYERREITEIMWIPGDKNPADAMTKEMSKCCKALRNLTQNNLIELEPNGWVQRETL
>Copia-48_MLP#LTR/Copia 385-4668 via tfasty with Copia-2_PPa, 60.0% SW:1614, 2 stopcodons. [Melampsora larici-populina]
MSLDFNTGNTSSSSRMLLTTKNYLTWVTMIECKLDRLGLLEIALGTEPITRTPGVEPTDLMKESHRLKSKRAYNVIVDYL
NEDNLAIVSSNEEVGKARNAFMLWTLLREKYIGENMLNRTTLFTKFANIVFTDVETFVKEIRSCANELRRSGFKMGEEMK
VIMALSKLPSEYESFVRVMTHGFPDQNLDFMLHRLEQDQLQSATSGVEANCASANHTKANSSRSDITCTHCKKSGHEETG
CWKKHKHLAPNRNRFxSRKPADEQEVPTVASYAGVDDSIPGSVPLPRTSVFVCSTSPESNLLDSGASDPMFKSRDAFKTY
NSCNVDISIGEEGRIIKAVGKGTVTIKSKYGQYNINDAFHVPSLPHNLFSLTPFWRKGVQLVYCNSNMFVLKKNDTIILD
GNIINKLLILNIEIIKSNQFNNALHTSAIWHKRLGHPCEENLKRAAECTEGMNSKITPLPFCEPCALGKSTRNRFPGTIP
KPVSPLDVIHSDLSGKITPSSVGGANYYVKFIDGFSSYWWIYLLNNKNDFLHVFKQFKCLVENQFGRKIKILVSDGGGEY
INHEMDNLCKSSGIIHQVTAPHTPQQNPISERGNRTTVEKARTMIAQSSLPTSFWGEAVITATYLENRTPSSSANFRTPF
ELIYKKIPNVNHIKIFGCAAYKHIPPANRHGKFNNRVEKCILLGFTEGTKNYRLIRISDRKLISSHDVIFNEEEFPSLGN
RANQVNEIIMNEESEIIDDVPDEPVENHQDDPEPDQPNDDVHIQADEPAEENQINPQVKDEPVVEDENNPINRENPFRIG
IHNPAMADAIREEQNERENPQPNVCRSNRLRGIPAPNVSVMIAQASALIASIGNEIESSMPYTPLDNMVDPASYSKAKLA
SDWLKWQSAVHDEFNSLIQNKVFRPCKSVPINRKLIGTRLILNKKLDGRYKARCVAQGFxQKEGIDYNETFSPTGRIATL
RALGAITALDDLEFRRADFVTAFLNSSLEKGEEVYIKPPEGFIEYIMSLPHTSVVYKLFKILIDDPNACLEVIQSLYGLK
QSARNWYTMVSDWFVAHDFHISSADPCLFIHIDKGHRRSYVYVWVDDMAIAGKEVDWILDELKKDFKIKDLGNVDHLLGM
KVTRNRAERQIMFSQEHYVDALLQQHGMEDCKPIGTPMQSNEMPSTATDEDREAFITSGYDYRAAIRSLNYLSQCTRPDM
AHVVSLLSQFLEKPGMTHWQCFKRTLRYLRGSKHLSLVYGKLISHTDMSFLQDSSKAPSPSTPTGFSDSNWAGCPLTRRS
TSGYVFLLNGAALTWRSKKQPTVALSSTEAEYRGFLDAGQEGVWIRRLMSDLGFENLCSTTLYGDNQGSIALAKNPVFHA
RTKHVEIHFHWIREKVKDQTFNIVYCPTEHMIADIMTKSLDRSKFVQFRTSLGLLPPSKIPVMVARGG
>Copia2_VC_yr#LTR/DIRS 4207-5334 [Volvox carteri]
SDRAPRTDLDARAEALLVALGAEADAELSTLATQFAQVAGQTLAPRTSNDYARSWEPFREWWVARRLPGSIYDTPGEAVA
LYLLSLLNSSKEDKVGPGRVRTASAAISSYFRLASRAPPTEHPACSIVRDLAEKQLQGRKLERDALEPADVTALARLVGG
PEPPLDQLMTVTAVVVMFAGFFRFDDAAEISVHEDLLVITATGMDVFIPRSKTDQQRQGHWVPIARVGGAACPVGLTERL
LTLGGYKRRPDTPDEDVGPLLRPVQWNRAGGYLSGPLTGTVAQPIHSLSYPAFCHRLNKTLQAAGITRRITAHSMRIGGN
STAADRGVPADLRKAHGRWRSDAMVQHYTRRDGEAKLSVSRSLGLASEQMSLRSAV
>BLV_pol#LTR/Delta gi|279723|pir||GNLJGA pol polyprotein - [Bovine leukemia virus]
GTSIPFKLERLQALQDLVHRSLEAGYISPWDGPGNNPVFPVRKPNGAWRFVHDLRVTNALTKPIPALSPGPPDLTAIPTH
LPHIICLDLKDAFFQIPVEDRFRSYFAFTLPTPGGLQPHRRFAWRVLPQGFINSPALFERALQEPLRQVSAAFSQSLLVS
YMDDILYVSPTEEQRLQCYQTMAAHLRDLGFQVASEKTRQTPSPVPFLGQMVHERMVTYQSLPTLQISSPISLHQLQTVL
GDLQWVSRGTPTTRRPLQLLYSSLKGIDDPRAIIHLSPEQQQGIAELRQALSHNARSRYNEQEPLLAYVHLTRAGSTLVL
FQKGAQFPLAYFQTPLTDNQASPWGLLLLLGCQYLQAQALSSYAKTILKYYHNLPKTSLDNWIQSSEDPRVQELLQLWPQ
ISSQGIQPPGPWKTLVTRAEVFLTPQFSPEPIPAALCLFSDGAARRGAYCLWKDHLLDFQAVPAPESAQKGELAGLLAGL
AAAPPEPLNIWVDSKYLYSLLRTLVLGAWLQPDPVPSYALLYKSLLRHPAIFVGHVRSHSSASHPIASLNNYVDQLLPLE
TPEQWHKLTHCNSRALSRWPNPRISAWDPRSPATLCETCQRLNPTGGGKMRTIQRGWAPNHIWQADITHYKYKQFTYALH
VFVDTYSGATHASAKRGLTTQTTIEGLLEAIVHLGRPKKLNTDQGANYTSKTFVRFCQQFGISLSHHVPYNPTSSGLVER
TNGLLKLLLSKYHLDEPHLPMTQALSRALWTHNQINLLPILKTRWELHHSPPLAVISEGGETPKGSDKLFLYKLPGQNNR
RWLGPLPALVEASGGALLATNPPVWVPWRLLKAFKCLKNDGPEDAPNRSSDG
>DIRS1_DR_yr#LTR/DIRS 4112-5129 From Goodwin & Poulter. Corresponds closest to DIRS10_DR in RepBase, but both DIRS1_DR and DIRS10_DR consensi contain many stops and shifts. [Danio]
GNLPTAVVNTITQARAPSTRRAYALKWSLFTEWCVSRREDPRNCQISVVLSFLQEKLDSRLSPSTLKVYVAAISAYHSAV
AGGTVGKHNLVIQFLRGARRINPSRPPLMPSWDLALVLTSLRSDPFEPLESVSLRFLSLKTALLVALASIKRVGDLEAFS
VSDSCLEFGPDYSHVILRPRPGYVPKVPTTPFRDQVVNLQALPPEEADPALSLLCPVRALRIYVDRTQNFRSSEQLFVCY
GGRQQGSAVSKQRLSHWIVDAISLAYSSRGQPCPPGVRAHSTRSVASSWARARGASLTDICRAAGWATPNTFARFYNLRV
EPVSSRVLGNPLVIEETTR
>DIRS-1_ACal_gag#LTR/DIRS 489-1689 via tfasty with DIRS-1_NV_gag, 1 frameshift. [Aplysia californica]
MADTEDILSVHDPYLDEDEILAGSESVPEPSTSRGSEQKRITFPYSAQSDTDIIQDALQRNTEAVAALVRSMRAKKKRKR
KRSVSSSSCESPILKHKKKRYYKSSEKRTRRVSETTQASHSNLEETGNVLSDGELIDDLFCPPNNDYRGERDEGALGAAG
DWFAEANNEYEVDEEITDPLSENLAKFVEKRFCTTMKNDKMKEKVSKYKRPGNCEALLVRQTNPEIWKLLQTGGKKNDAK
YTSIQKTIAKATTAVAQCADLLVKDGESKRPIVQKLLDVISILGHSQQKITSRRKEAQRWALPMNMKGICDVPIDGTKFL
YGDDIKKTIHDANEQRKMVQFSSPRATHANAYTSAYGKPAQRDRKRHFLAYQAGRPSGQRGRGYAHRPSASHAAVANKRK
>DIRS1_FR_gag#LTR/DIRS 337-1861 via tfasty with TnDirs1_gag, 2 frameshifts. [Takifugu]
MSSEPNHARKKSSVRPCPQGCGFSLHEKDLHEACPVCLGIVHARRALTEPVSCAHCRLLCGPTLETSRRGKVLGKATVAQ
QDPLLSSSKGLASSMPDGEEPLXGDSVESWADHMXSADGXAEXEPGTXDCANQGXQGLDXCHDSDDPLDIGLDIHGLSED
EQEEXSSDQYTAAAAVAIQLDTSFLSLCRRAAEKLSXEWPSPPPAQKPSRFTGFFLPPEPTTVKNSLPMFPDFVAELTST
WHKPLSTRAXVHLDSSLELDGAEETGLVNIPPMEASLASYLAPSHNHGVGGSATLPSKHCRFSASQLEKIYRSQASTARA
LSSVTMLQTYQAMSLAELGENMPPDSPLVPLLNEVRIATDHILRVSRCAALSLGRGMASTVVAQRHLWLTLSDVPERDRA
IYLDEPVSAGGLFGQSLDAIQTKFELRKKHAEALSSIIPRRDTKPKQPANLRRSALPHPPKRSAPAAGLEPQPTKSLSGG
NPRHSAWNKGPPRSLHKGSAPGRKKPQSS
>Ty5#LTR/Copia 5-4843 [Saccharomyces paradoxus]
MSPESNASETIINLSNPNNYKQWLYGIETAAEYANEYMNEFVHTGDIQSMKRDYNLSANDESFVKTVFNSFLVKLYKKTI
VGEAACEMNWICDDSLGRVSAYDIFSHFEENYNEVTIGSRLTLIEDLPNISSKPVDEIASFLKTLFTMLEDNSEEQDKKK
RRDTNIALLLMTFLPELKESFHEKFGDSKALQLSQVIRFCKLKASSNSLSSVSDTLVAQDRRSYQKKGNKGCMICGADHR
LSNCSLLKRRIPEARIFKLYPNDKTNRSSSASVAIPDYETQGQTAGQITPKSWLCMLSSTVPATKSSDWICDTGCTSHMC
HDRSMFSSFTRSSKKDFVRGVGGSIPIMGSGTVNIGTVQLNDVSYVPDLPVNLISIWKLCAKSNSSVTFTKEGVTVKSPD
DVISTAGKLNNYLYIFDDLTPVTTFSSQNYFCSKTLDSSKMITSAAFHTVADKMLSQHISPTALPVKWHARMGHPGADIY
NSLARTLRFPKFKTAEYTICPTCSLAKGIIKKGKVSLKKYTQPLQMVQADLCGGFRYQEFQSNKYFLTIRDAYSRYYSVI
HLKSKADAPIKFMEWINETEQYFSSRGGFKVGSVRTDNGTEFVNKNLHAFFKSKGIEHQLTIPYHSYQNGAVERAHRTIE
ERTRCLLIGGRVPPSLWSEAVSCAVYLINRSPVVSKNNSIPYCRWFNIPAKDFGIAHLRIFGCTAYATLQPSLRDGKLAP
TVISGVMVGYDSNHRGYRIYHPETGRIFVSSQVRFDEHMFPLADTEAVHVSHDFATSAIGGVSKYPETGSTVSAPKNDGS
DLANLPITVPKNVNQPAHKPNTSNISSSDDDEDISMEIEMEKPIPECNQDNLPNSGCPPTRIQHSNFESLPTVSTEDETN
SSMEKTPERVPAALTYREIPKSSDSEYIPTCRNRTRRVKRTNKKPTRSREIEIYDISRPNVISSDNLPEVRSAKQRKTVS
NTNDTVARTNRLPTVLRTLDSNNIDTLHVASTGEEVSIERLSSMALQEAKNNSARTNQANSLTDWFPVGAMPIPDQRYLS
VHDGTYISDSQDVGDTDLTPAVTRLVTEENSIESPPSLDSSPPNTSFNAALTAIIHSTKKGNPKTYAQAMGRPDFQEWHN
ACLKELSAFKDHNTYKLVSLPKQRRALGSRWVFTIKDSGTYKARLVAQGHTQKAGIDYQETFAPVIRYDSVRLFLALASC
LKLIVYQMDVDTAFLNSKMNEPVYVKQPPGFINESNPDYVWELYGGMYGLKQAPLLWNEHINNTLQKIGFRRHEGEHGLY
FRSTSDGPIYIALYVDDLLVAAPSPKIYDRVKQKLTKLYSMKDLGKVDKFLGLNINQFSNGDITLSLQDYIAKAASESEI
NICKPTQTPLCDSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTT
RSMCLKYRSGSLLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVSSTEAEYITASETVMEIEWIQN
LFEHLGQPLISSTLYVDNEPAIKLSKHPVFHTRTKHIALRYHKLRSAVAAGIITIEHVITKRQVADIFTKILPAESFKAH
RAVMVREPETAK
>SHACOP19_MT#LTR/Copia 68-4183 via tfasty with ATCopia3_1-4386, 2 frameshifts and 1 stopcodon  [Medicago truncatula]
MAATTNPTKTSLLIHASITLKLSRASHRAWKRQATSLLSGIQVIGHIDGTTPSQSPTIVTAGVSTPNPQYTNWFTIDQLI
INLLISSMTEADSISFASYDTAKTLWDAIEAQYANTSRSHVMSIKNQIQHCTKGEKSITDYLFSVKSLADELTIIDRKIS
DDDLTLYVLNGLGSEYRDIAASIRTRERPFTFEELHSHLLAHDEYIRRESQVEIQVPTANFAQRNSKNDGILPSPAYGRG
NSSLHTRGSNHGRGYGQSRKSRGFNPRGNRPPPRCxYCSAIGHIARYCPEISKFSNPPTAQYASASSTTPNWVFDTGASH
HVANSLNNMHIHSEYDGPEEVQIGDGTGLKISHVGSTTLPTQNTIFNLKNILCVPHAKHNLISISKFCKSNNVYVEFHSS
FFLCVKDQVTGAVLMRGPSNGDLYIYNPNFSSPTALSTVTSTVSLWHARFGHPSPRVLTQMLSNCGLSRNFNKKSLHCNS
CSINKSHKLPFSISSIQTFSPFELIFSDVWGPSPITSINGYRYYLVFVDHFTRYTWIYPLKNKTDVAIIFPQFHSKIENF
FSHKVKSIYTDGGTEYFKLKPYFNTHGISHYISPPYTPEHIGIAERKHRHIVETALTLLSHSSVPQTFWCYAFQMAVHLI
NLPTPQCHNKCPHEILFGSKPNYLNLRVFGSLCYPWLRPYSKHKLSNRSMPCVFLGPSNQHHAYQCYHIPTKKLYLSRHV
VFHESISPFTSTVCDSTNPSPPLSTNNQNISMSRHPLIFSQLHPTIPPHNPPPTIPQNSTTSIITPPVTSNLPHTPTSST
SSTNQSSPRTSIDSPLQMDSPASVQPVPLRPVTRAMNNIHKPNPKYLLTTKHPLPITIEPTCLTQEIKTSEWRDAMSNEF
NALIQQQTWDLVPRPSNKNLIGCKWVYRVKRKANGDIERYKARLVAKGFHQRPGLDYTQTFSPVVKPITVRLVVSLALQH
NWPLRQLDVNNAFLHGSLTEEVYMQQPPGFIHPDKPHHVCCLRKSIYGLKEAPRAWYQTLSKFLCDYGFANSKSDSSLFV
FRKQGMVLYTLVYVDDIIITGNSTAKVNECISKLASSFSIKDLGSLHYFLGVEVIPTSTCLFLSQHKYIADLLERTKMTD
AKAVLTPLSTSIALTKDDSSPNTDATFYRSTIGSLQYLSMTRPDIAFPVNKLAQFMQKPTTTHLTTLKRILRYLKGTIFH
GLLLQKPATSSLIAYSDADWAGNKDDYTSTSAHLVYFGSNLISWKSSKQRAVARSSTEAEYRALANTAAEISWINSLLNE
LGVSSSSTPIILCDNLSATYLTQNPVYHTRMKHISIDIHFVRDLVQQGKLKIQHVSTTDQLADCLTKPLSKGRHHYLRNK
IGVSDGTPTLRG
>rn_179-105_IR#LTR/Copia via tfasty with Retrofit7, 5 frameshifts and 2 stopcodons. [Oryza sativa]
MASSSSSTLSSSAVLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKESVNNPAYS
QWIAHDQQVLGYLLSTLSREVLVQVAHLESARQVWTAIxQMFSSQSKARIIQIRAQLARELKGDSSAAAYFTKMKGLADE
MAAAGKKLDDDDIVSYILGGLDADYNPLVASVSSKDYISLSDLYAQLLSFEAHLNNQSEGGYHSSANSASRGGRGRGQGR
GRGRGGFGSNFGSGFGGRGRGGRGRGDGSRPSCQLCGKEGHTVHTCWKRFDRSFSGNDVIFQQHHQQAKSASAVSSYGVD
TNWYLDTAATDHITGELKKLTTKERYHGNEQVHAANSAGMSISHIGRTIFHTPNRNLALNNVLYIPKAKKNLVSAHRLAY
DNHAFVEIHPKFFCVKDQTTKSTLLQGRSRGGLYPIPLKSTTPQGRQALVSTSSAESRWHSRLGHPSFSVVSRVLRKHNI
PVSESREERVCDACQQAKSHQLPYSRSVSRSSAPLELVFSDVWGPAPQSVGRFKYYVSFIDDYSKFTWIYLLKNKSEVFQ
VFTNFQHLVERQLGRKILTMQTDWGGEYHRLNSFFQKIGIAHHISCPHTHQQNGSAERKHRHIVEVGLALLAHASMPLKF
WDEAFLTATYLINRIPSRVINFSTPLELLFHTKPDYSFLRVFGCACWPNLRPYNKRKLQFRSKKCAFLGYSFHHKGYKCL
DISTGRVYISRDVIFDETVFPFVDLHSNAGNQLRAEISLLPESLLSSRGMINSFSFETNAPNNASSAGLYVQDSGDDNLD
QNSGGLSGIGPASSAHMPEVSGIGLFRCLGVTASSRMFRYVHLHHQTVFSWGHTCVVRQVPVRESTPGLSVSGGEMSGST
EDFISxICLRILDLLWLQQGEQQNIQPVVVIPACILVLQSNIRKPLTRTDGTIRWGMYSGSDKEPTCFDDALADENWKKA
MDEEYNALIQNNTWHLVPAPIGKNIIDCKWVFKIKRKSDGTIDRYKARLVAKGFKQRYGIDYEDTFSPVVKISTIRLVLS
LAVSKGWSIRQLDVKNAFLHGILEEEVYMKQPPGYVDKSSSYYVCKLVRALFGLRQGPVRAWYYRLYDKLCQLGFSASKA
DTSLFFYRKGDVVIYFLVYVDDIIVVSSSDQAIPALLKDLNAEFALKDLGNLHYFLCIEVTPSSEGSLVLSQRKYATELI
SRAGLRNCKPVSTPLAVSEKFSSVGGVLLSEEDGTKYRSIVGGLQYLTLTRPDIAFAVNKACQYLHSPTTLHWTAVKRVL
RYVSGTLTFGLKIGRSDSTTISAFSDADWAGCSDDRRSTGGFAIFLGFNLISWSARKQATVSRSSTEAEYKALANATAEV
IWIQTLLKELGVSQPKAAVLWCDNIGATYLSANPVFHARTKHIEVDYHFVRERVVQRLLDIRFISSGDQLADGFTKAQSL
SKLRIFRNNLNLCEVMIEGG
>TDH2_pol#LTR/Copia 1046-5068 [Debaryomyces hansenii]
QIGSHNTDIKLSSFSINNIISSDQPINNQYIYDNNKIDDSKNYVFDSGASVTVVNDIKQLINIKEDLEDSERLFYTVSNV
PIYAKAKGDLVIKIKNCKFTINNAYYIPGIQLNLISFNDLLNKGFLILFDNDYLFLIKKSNGKCFNIAKRDTNSNLFNNI
RSRDFFSMKLSRKIIDELNNMNQKIINKKTLNYFNNKYIKISNMNHEIANPFKRKRDLMYYHLMGNHMSLESMKYLIKSG
HIKMSSEITASEEERVKSCNECLAINSKQSSHNHTHFTAPRRLFRLHSDTLGIFSHRGKKYYITTLIDEYSGYLNTIWSE
HKSIQDLLFEKIRIWNNKFVDANVAFFRTDNALEMPTKDQLAEIGIEKDEIASYSPELNGISERTNRSIIQFIRKALLPI
QDTRTLYLLPKIVDYVTYIRNMTPVRSKGGLCPYALFYDTNKFHYNPIQFGLDVIVKLSSTVEAKKYGVSNSKTSPCILF
GTFIGYGTDVHVYKVILSTKDFPIIVTPNITLMKSMDNLKVYLKSLDYLQDKDAQDIDISLGKLTDRTDEKLSIAIEHMN
QDTIYECNEYDTQESLVNSNSTIQDVAQHIFERTHESNSLGMSNPVHSNYTMVTDTSNDFDYTIEETMNEVNLNPSDTNE
TTTDSNITKTNFNDSLNSSDNSQQKSSTHQTLPHPLAPDKNDEINKINEDGNTHLSLESSTLSEKTPTTQNNVRVSTRSK
KAIVETVEPRGKITSSKDSRVKKDPHKTSLRNSSKSSKKINDLQSHAPKVNKSLETIPYTVITRSMSRKLNSQSSKSNSL
VTRKINTVYRKVDLTDNNWKQSIQRELDTFKKYEVYTVVKNPKNVKPIPTTWVHTHKINDLKEVQYKSRCVVQGFRQIAN
EHYDTSKVSSPVIELSIIRLLTAIAVEYEWPIHHLDISSAYLHADIDYEKSIFVKPPPGSNIDSGKCWQLNKSVYGMKQA
GYMWYQCITKVLMDLNFEPDTAISGMFCKYFGENKKLIVALYVDDMFLTSSNITILNDFKLELAKHFDLKYFADISEFLG
IEFIQIAGGYRLSQHNFLNSVIKKFNLTNNYGKYIPIIKEKNKISETQLKSEFTNDEVIKNESLLNEEDKRLYQSGVGSL
LWAANNTRPDISFAVNQLSSNNQNPTSVDLEKLIYCLRYVKQTISFSLEYKRNRFSHKKGSFIIQTFSDGSFAPTKDRRL
ITGYTVYLNGNLINWSTIRQKVITDSSAACEINALHSAVRSTLKSRQAILDLNLVIDEITLFEDNAAVIANCNNEGTSYS
RRMVDIKLKFIRQLVSEGILKLKYVNTSINIADMLTKALSRKLFENLRSLLFERNDLNKE
>TSK1#LTR/Copia 227-5225 via tfasty with Ty1, 1 frameshift. Perhaps gag and pol are in different frames and here artifically merged. 89% similar to Ty1 protein, which is in one frame. [Lachancea kluyveri]
MMTPNQANPSGWSVYGHPYMMPYTPYQMSPMYYPPGSQQQYPQYTSGVGTPLSTPSPESSNTPTGPPSAKSNMTPVNKSV
RPPPFLTSSSEFLIWVRNYIKFLQNSNLGDIIPKTNGKATRQMTYDEHTFLYNTFQTFAPSQFLPTWVKDILSVDYTDIM
KILTKSMEKMQSDNQEVNDYITLANLQYDGSIPADMFETQVINTIDRLRDSGLHINDKLACKLIRRGLSGEYRFLRYARH
RHLNMTVTELFMDIHAIYEEQQETRYNKPTYSKNPSDKRNTSRAFTNTNKAKTVTRNPQKTSNSKSRTVKTNNVSTSHNS
FDENNDSINESPDQTIYLNNQYDLHLGQKHTESKVNHTDHSNDELPGHLLIDSGASQTLIRSAHHIHSASPNIDISAIDA
QKKEIPINAIGNLQFQFDDNTKTSITVLHTPNIAHDLLSLSELAKQNITACFTKNTLERSDGTVLAHIVRHGDFYWLSKK
YLIPSNLSVPTVNNIGTDKGSHKYPYPLIHRMLGHANAQTIRNSLKNNSITYLKESDVDWSKATTYQCPDCLIGKSTKHR
HVKGSRVKYQNSYELFQYLHTDIFGPVHNLPKSAPSYFITFTDEKTRFQWVYPLHDRREQSILEVFTTILAFIERQFKAS
VLVIQMDRGSEYTNKTLHKFLLKKGITACYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAVEFSTIVRNS
LVSPKNEKSARQHAGLAGLDISTLLPFGQPVVVNNHNPDSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVIL
QDKQSRLDQFNYDALTFDEDISRLTASYKSFIDSNEIEQSCELHMDSDHNFQSEIDHGTEPRRDDSPTDLIATGSLSTST
QPTIMEPVPTTNVRAPKEVDPNISESNILPSKKRYNVPNIPDPDSTCSGGTNRPDVSIVIPAHDSVTQQSNKYNNYDKVS
DPGPYSNTDTGFTNVTTPCLGGTNNKNIPDLNDQTIEKRSISCPIPLDDSSQGSEIPNYNTPIDTPDTYSEHDVKEYITE
DLPLPELPPESPTCFPDAFKEIPPINSRQTNSSLGGMGKPNIYATIDSKKRSLEDNETEIKVSRDTWNTKSMRSLEPPRS
KKRIHLIAAVKAAKSIKPIRTTLRYDEAITYNKNIEEKEKYIQAYHKEVNQLLKMNTWDTDRYYDKNEIDTKKVINSMFI
FNKKRDGTHKARFVARGDIQHPDTYDSEMQSNTVHHYALMTSLSLALDNDHYVTQLDISSAYLYADIKEELYIRPPPHLG
MNNKLIRLRKSLYGLKQSGANWYETIKSYLVDKCGMEEVRGWSCVFKNSQVTICLFVDDMILFSKDLNSNKRIIEKLKRQ
YDTKIINLGDSDDEIQYDILGLEIKYQRGKYMKLGMENSLTEKLPNLNVPLNPKGRKLAAPGQPGLYIDQEELELEEDDY
KMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWDTRDRQLIWYKNRSSKPENKLVVIS
DASYGNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAVPLLNNLSYLVQELDKKPIIKCLLTDSRST
ISIVTSKNEEKFRNRFFGTKAMRLRDEVSDNNLYLCYIETKKNIADILTKPLPIKTFKLLTNKWIH
>TOPIE1_LE_gag#LTR/Copia 114-1669 via tfasty with Copia4_MT_70-4953, 4 frameshifts and 3 stopcodons. [Solanum lycopersicum]
MFNGSHFGxWKAHMEVFIQAEYYELWIVINIGPTIAMKIVEGLKLQKVKIDFTTEDLSALRKNAKNKNILVCGLGPDEYN
RISNYTTAKQIWDALVDAYEGTSQVWKFIVDMLFTEYETFKMSxGEPMSKMITRLTKLVNELSSLGKILTTEEHVDKVLR
ILPKNKxDVKVTAIREAKDISSMTFDQLVENLRTYEMNMDDLKKGEMLSEKALALKVSDGEDIEYDEDKMSLLAKGYKKY
LRKEKENEKKKTNQKKWINDKSQNGCYKCEKMGHHVKNCPQWEANWRKERMEKERNSKKKEEYAMVASWGSRDGESDDEI
DETTFLALGDSDAKDDENSEVSITDVKEKLHSFSKSRLIGLINRLIDDLEELTCERDKLFKAFADKKFEYMDLKDDKIVT
DKQNNCLKKHVEKLESSNLDLKSEILRMKITE
>DIRS-1_AMa_yr#LTR/DIRS 3203-4372 via tfasty with DIRS-5_NV_yr, 1 stopcodon. [Allomyces macrogynus]
ILEGLATSSGLTVDAALLVFFADRDSTTEARVSRFQHFVSWCRNLDTDPLEYAPDRLASCLSALSSRLAPSTLRMIAGSV
SVIWRLLHPSLPPAGEAVVITRLLKAVARSRAAPPPAPSRGxWDPQPLLDKIASRWADPLGELDLARYTLTLLALATAWR
PRSDLGRVLFAHLEFDMDSPAPPGAWHTWPPKSVPDSVTLSAWRTKTSDDLVSVRVRALSSDPNLCPVRWTWRYVQRTRH
KRSFDPVPADALLFLRSTDSGPASEDTLAKWVQCVLDSAGIHATAHSTRGVAATVAAEGGASLMSILRSAHWASASTFSR
HYWCGDGSLVRFFRKRDGAPDAVPEGLGRVTLKRARIVDEDLTIMDAEAGVTDTLRVSEPGRTAEQPGEA
>SpDirs1_pol#LTR/DIRS Now DIRS-4_SP in RepBase. gi|51371925|tpg|DAA05237.1| TPA: polyprotein [Strongylocentrotus purpuratus]
QARKWELQHAFFRPANPTRQTIQSSASHPDDEHGKTDPILPAATGSKEEIATPLPKEVSSTYEYCENVNAPSTSCTLQQE
CISNVPVGGRLIYFYRRWRELTSDLFLLSAVRGYEIEFDYSKGVPSRNKPLYGYKKSPLEINQITKEILALQAKNVIEPC
SFEEGEFLSNIFTRPKKDGGTRMILDLSELNQSLNVQHFKMDNIHTAKHLISPHCYLASIDLQDAYYSIPVDPNSRKYLR
FMWQGERWQFAALPNGLSTAPRLFTKLLKPVFAELRQAGHTVIGYLDDTIIIGETKEKLKESVSATTKILSELGFLIHTK
KSVLIPTRELAFLGFILNTESMIVKLPQTKAQEVKDLCRELMGTYLPSIRMVARVIGKVIATFPAVEYGPLYYRSMERDK
IAALRQNRGHFDRKMKLSLEAKEELKWWMNNVSMASSPIVRKKPDLELHTDASGLGWGATDLQKQTGGRWNEFEAERARN
NEINFLETLAAGLGIKSFCMNKRNVHVMVRIDNTTAVAYLNHMGGCKSAMCDKMTREIWQWCISRNIWVSAAHVPGRLNT
IADERSRKFNDRTEWKLNRQVFDRIVSHFGVPEIDLFASRLNAQVEKYVTWHPDPGAFAVDAFTLDWKPFAFYAFPPFCM
IPKCLQKIREDKARGLLLVPNWPTQAWFPQLVSMMEGEPLFIQRQEDLLLLPVLNTTHPLNANIDLLCCRLCGNILRIGD
>DIRS-13_DR_yr#LTR/DIRS 4204-5322 [Danio rerio]
ATGPAVTSGGTDISPSPRTNQPLGLAREGLNLNALGLPREVISTIQSARAPSTRSLYDLKWRVFEDWCTSEGLIPFQCSV
RDILCFLQSLLDNGRAFSTIKVYLAAISACHVGFEGVSVGRHPLICRFMKGVKRVRPAVKRLVPSWDLSLVLDALTRAPF
EPLEDIPIKLISLKTALLLALVSAKRVSELHALSVHQACMDFSRDDDRVTLLPNPAFVPKVSDSAYNCSAIELHAFHPPP
HLSAEERKLHTLCPVRALRLYVNRTRSFRRSDQLFVSWATRRKGEAVSSQRLSHWIVEAIELAYTSRGLRSPEGLRAHSS
RGIATSWALFRGISVRDICKAASWSSPHTFIRFYRLDVTAPSLAHAVLNVCPL
>ERV1-1_Crp-env#LTR/ERV1 5386..6963[Crocodylidae]
MDNMCLASTVISTFVLVVCLPTLIGCPCSLTRFAGVYPGTQLGYTNTKQVRDKVNQVPPEGASAVMYRSNASPGQCKLYG
YYTNSNEIWCADPTTEASQAYIQSKTTNPGEQSFYFKSGMGTSVWRVSSPKLLAINPHQNVEWPHNALVKMTNSYASNLN
FSNCWVCTRLPKHPSVGIPLIGLGLGSFNYSSISKSTHNDSKWYYEYWFLNEVILPEDSVCYYKPCLGSFAVFVGNATAG
ACNITITLDPSSLGWQGNGPVHVGHYWLCGKIAFKHLPPTWYGTCTLGVVIPDMTLHPNTSLQGWHRNRPHRFRRGAGLN
PLVERPTSFHSFARWFIPWLGVSELEKALVNLSASLEVLANNTADALTRLQTEVTQISHITLQNRLALDLLLANQGGVCT
LVNDTCCTYVDESGKVLEDIHKIQNMASQFHAITTDNTSWGIQDAWALLTSWFPGLRWAHKLIVIIVALGCFLILTCCCI
QCIGTLPSVLSTCCRCTMHNIEECVEMSKAKVLECQKRLDAKYSRK
>ERV1-2_AMi-I_3p#LTR/ERV1 5799..6911[Crocodylidae]
MESLLLTICIGLLNLAYGNVFLSLINQIRIDLNVSRCWICSHVPIHSTGGIPMIPVPLNATQMSAPYYSPFHGNETWQDI
NCNRADYVRLAYATPGKFCWTCNGSRVAVGVSKCEVEFKVNGAWLSNGSWIPGYSPISAGYLGYYSVWMLKPVCNFSVTA
LAGHYFVCGDKAYKNLPSGWGGTCYVSAAYPAFTIRSHLPKGRIRNVRKITENQRFWGIMFPNYGAGLAMSEIKKVAASL
EKIANATAIGFREISKEMKEMRQMTLQNRLALDYILASKGGVCALIKSECCVYIPDASSAIENQAEIIEKEAAKLHQTDQ
WSLWDWFGGLGAKLFYIAIMVLGFILFLQVLLLLLRNCNLSASRKRRNRYV
>ERV1-1_XT_env#LTR/ERV1  6562-8259  [Xenopus (silurana) tropicalis]
MCVITQCPRPGYWETMYTSESAGYICVTSDYWGNQCSSWGAVGWNTGAEWGYKPQEAVDKKDHNGKSLLTRMTLTKTGRP
CQPNAPTCPLQYALNIENPSKNDEGTYVIATYRPVYRQFYWGYLVLKDMYQNPEYDEEIQPRPPQPAFSMIKAIADPSYE
DTIAIETGFAETNLWLEWMKYTADQHNFTDCYVCAGARPHLGTVPLNLPPELELCVLSLFTNTSPPHDDTCSHWKKSYPL
SNEHPTSNTPITVYQGDYTCYNGSSTGLKLKSFPSGYCSTYSQAPSSFLQNQTVSIADVYWLCGDMKTRRILPPRWQGEC
ALAKLLMPLHILGTKHNTIANDTVSRPKRELRGSLDPHVYLDSIGVPRGVPDEFKARDQVLAGFESLLPQITINKNVDWI
NYIYYNQQRFVNYTRDAIAGLAAELGPNSKMTFQNRIALDMLLAEKGGVCKMLGSADTCCTFIPNNTGPSGKVTLALAKL
TELSGELKRNSGITGSLGSWFEGLFSSWQTALQSLAVIFACIFLVLSVVACCIIPIIRRLITTNMYSYAADYAVPDDLHD
FELSYA
>DIRS-7_NV_yr#LTR/DIRS 3070-4167 [Nematostella vectensis]
MDDTTMVSSIVTTLHSSANTASTDGPSADTSSQSGAASPERQAAPGRMDVIRRSLSAKGFSDEAIRIISASWSTGTDKQY
NTVWKKWCCWCDQRKVDLLQAPVSEVVNFLADCFAGGKSYSTINTYRSALSTTLYSVNNVAVGSHPLVTRLLKRVYRLKT
PSPRYSSTWDVSKVTSYLRTLFPLEQLSLKTLTFKTVMLCALSSAQREQTLCALDLRYMNLSNGCIVFDITECLKTSRPR
KPSLKVEFSCLNEDKSICPVVTLKEYINRTSSLRTSSGESVSKLFISFIKPHKAVSTGSAARWINTVMAAAGIDTDTYKA
HIVRGAAVSDKYLKGVPVDEILRMADWSNERTFRKYYLRENNVAK
>DIRS-1_NV_yr#LTR/DIRS 3671-4468 [Nematostella vectensis]
FLVELYNQGIGYSGMNTARSALSCILKPVNGISFGSHPTVSRFLKGVFQSRPTISRYTEXWDVGTVLAYLKTIPSTADAS
LKDLSLKTVMLMSLVSAQRGQTIHMLNLKDMINEETGITFVMSVPMKQTKPGSKSVTVQFKPYHVDPTLCVVTALREYVL
RTETLRGECKQLFISYLKPFKPVSRSTISRWVKVVMKTAGINTDKFKPHSTRAASTSNANISSVPVDQIMSVAGWSSAST
FAKFYNKPFDVNNGFADTILAAVKD
>DIRS-1_CB_gag#LTR/DIRS 296-943  [Caenorhabditis briggsae]
MADAINKAALKEFGEEILGKVAELINVGVDKKKKEKEVEEEKPPKVSSKGIQKNIDFNFKIKNVLSKAMAADDLENGVKE
VLELIKSRNGELLLLDSDPNLLQTKEKLDALKAISGGDSEGSSTQADMTSILLLSNLTGIAGNKSGGYHGDVKRRRQDPL
PSRQQWFRSEGVFRGQGNTRQNGGQGYGGRDGKRSIRCYKCQGYGHYANDCEQRR
>DIRS-2_ACal_gag#LTR/DIRS 249-1531 via tfasty with DIRS-1_ACal_gag, 1 frameshift. [Aplysia californica]
MSVIETDEFHLADFDFEDDDCTGPEENKKPAQNESPVSEQKGPDNDGNQMPGVQANLLSAIEMQTKLLTKILKSNKVSGK
IRGRKKSRYENSSSSSSSSASSSSSPPCSPIRKKQKRRVNSPSPKRCTPTLPRSPSSSFPSRVVREAGEGQRDRTDRSVS
PGEVETSADEMEKEIRGAANLNPADHNSNCRENLFEYAEAELLMEDEVAPPISDTLAKFVANRFQKKLSDNILKKKLGEY
KQPSNCPQLSAPQTNNFIWKALRAPYRRNDARLTNTQTNIAKVATTVATAIDNLQKRKERDLDFQSTMGHLLNALSNMGH
THQHLTAFRKDAQRYTLPHDYKGVCDVEAGSSKLLYGEDVKKTLREAKEEKRLASSLTEKSSYTAKPFNKGKSFLGRQKP
FGQEQQKGRQFQKRPFRQMGQQFRKKQK
>DIRS-2_NV_gag#LTR/DIRS 139-654 [Nematostella vectensis]
MAKDEEFNDEILQADPERDKNRLLRQLLTTMNANMCEMSESLKALKRGANGDHEADPAKKAAKTANTASNAKPEGISDTA
KDLLDFNNNESKAEEPKEQHSIHESLLDDLAKSLDTKERTAEAVNQKLADVANKSWLKKLSEEQLRDTADKYLRPNNCSH
VVVPKVNEEIW
>DIRS-2_ACal_yr#LTR/DIRS 3549-4478 [Aplysia californica]
MSSWRNETKKAYHRYIEDWKRYAVLQQVDSISPPLNVALNFLATLVTEGKSYSALCIARSALACYINVENCSESFGNLPQ
VRRFMKGAFESRPSLPLKSRVATWDVNTVLSFLETWYPHESLTLKELSLKLAMLLALLCGQRCQTLYKLDTNYMTLTSNK
CTFFISNLLKHSRKGCHQKPLEFLAFENCPQLCIVEILTVYLNMTGEHRKHNNTSRLLISFKRPHLPISKDTLCRWIKSV
LDLAGIDIAFSAHSTRSASTSAASEAGVPLTTILEAAGWTQESTFTQFYKKQVKHNFGQRLLDTYFSKST
>Copia-110_SB-I#LTR/Copia 133-4591 via tfasty with Copia-89_SB, 3 frameshifts and 2 stopcodons. [Sorghum bicolor]
MDNDDNPLFAFAYSNHGSPSSASSASSASFTAPAAPPHQPPSASALMMVNIKSHVPVVLDLVNPNYQEWRCFLDSVIGKF
GLLGHIQGAPTAAQRADPDWVMKDQCLVNWLFNTMSRDVMRIVRVPGATAFTIWSRVEQFRDHQLHRAVYLGAEYRSLHQ
GELSITDYTAKLKELTDALGDLGQPVSDASQVLNMLRGLNHKYRHCIATITSTQPPHTFLSARSFLLLEELYATQHDKLA
AQQAMVAQSSRVPSSTGGSSSHPAPPPAPTSAGPNHGGSNGSNRNRRCGRGHGNGTGAPAAPPGGSSTTPLPEHSVGCGV
HPWQGMVQAWPMPFRPPAAGVLGPRPGTPPQQAFYAGGAPPGMYAGYNPPPAYAPASAEPNALLAALANAGVPPAGTSTS
DWFMDTGASSHMASGTGNLNQLRPLYSSSSVTVGNGARMPITHLATSSIPTSSSPLSLNNVLITPSLVKNLISVRSLTRD
NNVSVEFDPDGFSIKDLHTRQEKLRCNSRGDLYPLRPPHHHALHASADLWHQRLGHPGRDQLAAALRIFDFACTKSTAHV
CTACQLGKHVRLPFSSSESISYFPFQLVHSDVWTSPVPSVSGYKFYLVIIDDYTHYVWSFPLLNKADVVPTFLNFCAYVQ
TQFRLPIVALQTDNGREFDNFTMRQFLQSHGIVFRLSCPYTSAQNGKAERILRTLNDSVRAMLLHASAPPQFxVEALNTA
THLINIRPCRATGTMTPHQLLFGTTPTYNHLRVFGSLCFPNQTATAANKLCPRSVPCVFLGYPADHKGYRCYDVATQRVI
TSRHVVFDELQFPFRQASQPREPSTVVIRDVDQIVAPQTTAGLGDARLPRRRIISDGTHSSDTTTAPPSSIQTAPRFDDT
PTSSSTSSSEERTSTAPSTATSPTPSAPRFDATPPPSSTSSSSGGTASSTPPPVAAVRRHPMVTRARDGIHKPNPRYAMT
AAAPTVSPIPTSARAALRDPNWKAAMQQEFDALQANHTWRLVPRPDRANIVTGKWVFKHKYNPDGSLDRYKARWVVRGFT
QRAGIDFGETFTPVVKPATIRTVLTLIAGRRWPVRQLDVSNAFLHGHLDERVLCQQPIGFVDPTQPDAVxLLSRSLYGLR
QAPRAWFTRIAGFLHTIGFVATRSDSSLFVLRRGSSTAYLLLYVDDMVLSASSDALLQDIIAKLQAEFAVKDMGPLHFFL
GVDVRRRGSDFFLSQTKYAEELLDRAGMMNCKPAATPIDTNAKLSSTAGAAVRDPSEYRSIAGALQYLTITRSDIAYVVQ
QACLHMHDPRDSHLAIVKRILRYVRGTTAYGLHLRGTTSTPTIIAYSDADWAGCPDTRRSTSGYCIYLGNALVSWSSKRQ
ATVSRSSAEAEYRAAANAVAECIWLRQLLGELHINVPSATIAYCDNISAIYMSKNRVHHGGTKHMEQDIHFVGERVAFGD
FRVVHVPTDQQFAEVMTKALPIRTFNTFRSSFTVGPPDAVIAGGGG
>Copia-107_SB#LTR/Copia 97-4319 via tfasty with Copia-29_SB, 2 frameshifts and 1 stopcodon. [Sorghum bicolor]
MAGGNGETSASSAGVKENSLMWPMLTSDNYTEWVMLMQCNFEAMEIWEVIDPGTDPKRAHDRQAMSVLLRSVPKEMWQTL
GRKSTVKEAWEAVKTMRVGADRVKEVNAQRLLKEFENIQFKEGESVDDFGMRITNLVGNLKTLGETIADSLLGESRxFVR
VVKKFLRVVPPRFSQIVVSIEMFCDLKTLTVEELIGRLRAAEDRLDDKVEQIVDKAGRLLLAEDEWLEKNKHRFHPGPKQ
AGGKGGPGFSKNKAPMRSDGGGSQEQVKLTSMGTPRRKGRCRNCGIYSHWAEDCKRPKKEKKEAAQPEVNMAAVNQDGGA
LLLAMCEVVHGSTDVVHLTEKVVPVDVPEGVWVLDTGASNHMTGTRSVLSQLDRSVRGTVRFGDGSRVEIEGIGSVVVQG
RHQEHKVLTDVYYIPKLRSNIVSLGQLEEKGFRGALGSGKLCVYDQEGTLLISAPRTANRLYTVKFNLSTPICLLAKSED
AAWRWHARFGHLNFRALRNLSSKGMVEGMPIVKQVEQVCDGCLLGKQHMKPFPQASKFRARKGLELVHTDLCGHITPKTP
GGCSYFLLVVDDYSRYMWVELLKTKDQALDHFKKVIRRAEVESELKLKALRTDRGGEFTSQLFTVFCNEQGIKHYTTTPY
TPQQNGVVERRNQTVVEMARCMLKTMSVPAKFWGEAVTTAVYVLNRCPTKALNDLTPFEAWHRRKPTVSHLRTFGCVTHV
KKIGPGVSKLTNRSSKMVFIGYDSGTKGYRLYDPSTGRLVMSRDVVFEEHLAWKWEGVSSNTAISTGIETETFTVHYQNT
VAEPTTDENAVFQPADNEEEIFVDQGNVVDPNEATPTPQNSPEVNQPAENIWATPPSNHSEETFGGPLRFRRLDDLYDST
EEVHDYEYSGVCMLAADEPSGAEQALEEQCWIDAMKSELLSIQENGTWCYSSLPKGHRAIGLKWVYKVKRDPEGNVVKHK
ARLVAKGYAQRQGIDYGEVFAPVARLETVRLILAMAAQGGWEVHHMDVKSAFLNGDLQEEVYVHQPPGFLNPKYPGKVLK
LNKALYGLKQAPRAWNAKLDQELQKLGFVRSKEEHAVYKMGNGDTLLLIGVYVDDLVICGPDKTKIAEFKRRMINTFSMS
DLGLLSYYLGMEVRQCPGQITICQRAYAKKIVEQCGMTGCNAVMEQNCKLLPGKPDLARDVTKFRSVVGSLRYLVNTRPD
LAFAVGMVSRFMESPTSEHWAAVKRIIRYIAGTADFGCEYVKKPTSDLCLKGFSDSDHAGDLEKRKSTSGVLFFLNENVI
SWTSQKQRVVSLSSCEAEYIAAASAACQGVWLSRLISDLTGEAVRKFKLMMDSRSAIELSKNPVYHERSKHIDTRYHYIR
ECVEDGIAEVDHIGTDNQLADILTKPLGRVKFVEMRQKLGMVRVCHD
>Copia-118_BRa#LTR/Copia 101-4294  [Brassica rapa]
MSLASPATSAETINVSDTPVLLNVNMTNVTKLTASNFIMWSRQVHALLDGYDLAGFLDGSVVVPPPTLTVDDVVSDNTAY
VLWKRQDKLLYSALLGAITPPIQPLLSKASTTAEIWELLTATYAKPSRGHIQQLRQQIKHWSKGTKTIDEYIQGLTTRFD
QLALLGKAMDQEDQLEAILEGLPEDYKTVADQLEGRDTSPSIPEVHEKLINFEAKLQSSLTAPATPTPVTANVAGFRGNN
KGNNYKNNQNRGAYRGNQQTQSQSHYAPRPNRYAPRPYQGRCQICSVHGHSARTCPQLQQPANNYYPQPRQYAPWQPRAN
MVASPYDPNGWLLDSGATHHITSDLNNLALHQPYTGGEDVTIADGTGLQIANTGSSFLSTPTRTLALKDVLYVPNIKKNL
ISVYRMCNANQVSVEFFPASFQVKDLRTGGRLLQGRTRNELYEWPVNPQNPTILFASPTPKTDINSWHSRLGHPSLPILK
SVVSQFSLPISNSLHQTLSCSDCLINKSHKQPFYTNTISSTYPLQIIYSDVWTSPVLSVDNFKYYLVLVDHYTRYTWIYP
LKQKSAVKDVFIKFKPLVENAFKQKITTLFSDNGGEFIALRSYLAEHGIAHLTSPPHTPEHNGISERKHRHVVETGLTLL
SQSSMPKSYWSYAFTTAVYLINRMPTAVIQNESPYRKLFGQDPNYLKLRLFGCASYPWLRPYTNHKLDARSAACVFVGYS
LSQSAYLCLEKSTGRVYVSRHVVFDESIFPFKTLTSQSPAQDDQPEPCPAYYPTTVVPTRTLVSAPTPGPPPAVLHLPTP
ASPLPQAEPRQQPPIASTSAPPRPPVATATPSPVNFPTQPTSNTSPAPSQPTINPPPNNHPMRTRGKNNITKPNQKFSYT
TSKTKPTIPKTVAEALRDPNWRNAMVEEINAQIRNGTHELVPPEAYQNVVGCKWIFTLKYNPDGSLARYKARLVARGFNQ
QQGRDFTDTFSPVIKSTTVRSVLQLAVNHDWNIRQIDVNNAFLQGRLTDEVYVKQPPGFVDRDRPTYVCRLKKALYGLRQ
APRAWYQELRTYLLTLGFVNSVADTSLFIKSTGNAILYVLVYVDDMLITGSNRNLIDGLISTLQTRFSIKDLGESKYFLG
VEFSRSSKGLHLRQEKYTKDLLQKTKMLSSKPVSTPMSPNPKLTLNSGTRLADAREYRTTIGSLQYLAFTRPDIAFAVNR
LSQFMHQPTDLHWSAAKRVLRYLVGTQAHGILLRRGTPLTLHGFSDADWAGDAEDFLSTNAYIIYLGGSPISWSSRKQKG
VARSSTEAEYRAVANAASEVRWVTSLLTELGVQLPSSPVIYCDNIGATHLSANPIFHSRMKHLALDFHFIRDNVQAGTLR
VAHVSTHDQLADPLTKALPTPKFQQLISKLGVTSVPPT
>Copia-127_SB#LTR/Copia 37-4507 via tfasty with Copia-79_SB, 83.0% SW:4737, 1 frameshift and 8 stopcodons. [Sorghum bicolor]
MAFTSSSSGAPAVPSFAGFIPVSEKLTRTNFASWKAQVVSALKGAQLFKYVNPAVKPPPEFVVKKEDDKEQSVTNPDHDQ
WVAKDQMVLNFILSNLSKEILAQVNDEVTAAGAxTAIQGLFAAQSRARIIATRMALATTSKGSSTVADYYVKMKGLTDDM
ASAGRRLEDDELISYILTGLDSNFNPVVTAVSNSIEPISVTELYTQLVSHEQRLEMQSGGGQQSSVNLAAKGNRGGNTNN
FNNFPRGKGGRGGFVRGGKSGRGGSRPPAAPFQPGVFCQLCKKEGHTMINCFKRYDATFVPPSQKSASSAMTSSYGVDTN
WYLDSGATDHITGELEKLSTRDRYHGGEQVHAANGSGMEIRHIGHSTLHSQTRDIHLNNILHVPSAHKNLLSVNRIAKDN
NAFLEFHPNHFSVKELEMRKTLLTGRCEGGLYPLKSSSNQIRNKQAYGVVKPSTSLWHSRLGHASTRVVQHVLSRNNLPF
VRDSENKTVCDACQCGKSHQLPYSLSSRVSSGPLDLIHSDVWGLAPTSVGRHCYYVSFIDDYSKFTWIYLLRFKSQVFQC
FTDFQKLIERQLNKKILTVQTDWGGEYQALQSFFKRIGIGHRVSCPHTHQQNGSAERMHHHIVEMGLSLLAHASAPLKFW
DEAFLTAVFIINRLPTPVLNNDSPFFRLFNTQPNYTFLCTFGCACWPNLRPCNTKKLQFRSKQCVFLGYSNLHKGYKCLD
PASGRVYISRDVLFDEKIFPFASLHPNAGAQLRSELALLPDVLQNPSSSFGDVLVHDRSDVFPSTTDASPSSSLACDPAG
KNADAGGGNASASIRDFMCCTHGDNTAVEIDPREQQSASGAGVSVSGSVADPILLSPSTAPAPAGQHPGSSVASSSASPS
PDSTHPPQLDPVGGEAVAAATGSGSASLEPTPVPSPMLTVPQGPVTRLQQGISKPKRFSDGTVRWCMSTDVSAEESPSIA
EAFGNKDWVGAMDAEFHALQRNNTWHLVPRPRGKNIIGCKWVYKIKRKADGSVDRYKARLVAKGFKQRYGIDYEDTFSPV
VKAATIRLILSLAISRGWSLRxLDVQNAFLHGILEEEIFMQQPPGYESKSHPDFVCKLDKALYGLKQAPRAWYARLCAKM
VALGFRPSKTDTSLFFYQKGQQCMYILVYVDDIIVASSSQQPVxWTVxPExWLNGRxPTVYRLAFRKTLAALLADLHSEF
ALKDLGDLHFFLGIEVQRTPGALVLSQGRYAMDVLARAGMKNCKPVDTPLSITTKLSLEEGEKLSSDDATKYRSLVGALQ
YLTLTRPDISFVVNKVCQFLHASSTAHFSAVKRILMFVHGTWNSGMKIVRSDSTLVSAFSDADWAGCVDDRRSTGGFAVF
LGPNLVSWSARKxSTVSRSSTEAEYKALANATAEVMWIxKLLTELGVRHPPAARLWCDNLGATYLSANPVFHARTKHIEI
DFHFIRERVAQKLLDIRFIHTGDQVADGFTKPLSVGKMKEFRANLNLVSG
>Copia-119_BRa#LTR/Copia 2-4199 via tfasty with Copia-16_BRa, 83.4% SW:4417, 1 frameshift. [Brassica rapa]
MAEEAPNGPYPFPTGLHVTSCVTLKLSESNYLLWKTQFEALLSSQKLLGFVTGQVEAPEATVTVVENEVQVVNPNPDFEA
WTCTDQLVKSWLFGTLTEEVLGYVHSLTTSQEVWLALADNFNKSSVAREFDLRRRLQLLSTRGKEFLVYCREFRVLCDQL
SSIGRPVDESMKVFTFLNGLSRDYDPISTVIQSSMSRYPPPTFSDMVSEVTGFHTRLQSYETPAEVTPFTAFQTQRTGYN
GNQRGRGYNGGRFGARGRGGGFSTRGRGFSQQVNSSGWNQAQGSDSNRPTCQICGRVGHSALKCWNRFDNAYQSTDIPKA
LAAIQVSDTAGGEWYPDSAATAHITAHASALQNVSPYHRPESVMVGNGHQLPITHVGSTVITTPQGSIPLLDVLVCPGIQ
KPLLSISKLCDDYPCGVFFDSNWVYVIDLNSQRVVTKGPRHEDLYKLKNAEFVAFYSNRQVTASELVWHHRLAHSNPQVL
QHLKSSKVISTNKSSTSSICEPCQMGKSARLPFFTSLSTAVAPLDRIHCDLWGPSPVVSNQGFKYYAILVDDFSRFSWLF
PLKTKSEFYQVFVAFQKLVENHYGRKIKQFQSDGGGEFTSNVFKHHLASCGIHHQLSCPSTPQQNGLAERKHRHLTELAL
AMMFQSKTPFKYWVEAYYTANYVSNLLPSAVVGFKSPYELINNSKPDYSFLRVFGSACYPCLRFYGQNKFDPRSLQCIFL
GYHSQYKGYRCLYPPTGRIYISRHVIFDEDVFPFENRYKDYVVPLSTPLLQAWQSAPASPTLLPTVQRTHTSQPSVSSPQ
VENPGVTSPSLSTEEEYDHSVHTPERNEPSGERSESSGDRSVPVAAAQPSRLHQMTTRLQHGICKPNPWYALLTRTDIPS
IPKTIAAALKDPGWTNSMQEEMDAQNQNETMSLVPRLPGMHVLGCRWIHTVKLKADGTPDKLKSRLVARGYEQEEGVDFV
DTYSPVVRTSTIRVVLNVAVSKNWKVRQFDVKNAFLHGELQEEVFIEQPPGFEDQSHPDYVCRLHKALYGLKQAPRAWFN
KFTNFLLEFGFKCSPADPSLFTYHCKGQSMVLLLYVDDVLLTGTSSELMTRLVDDLSNTFAMKDLGEIHYFLGIQAQYHD
QGLFLNQTTYAEEILFEAGMAAANPMPTPLPSRLDEVFKDTVVFPEPTYFRSLAGKLQYLTLTRPDIQFAVNFVCQRMHS
PTMSDFNLLKRILRYIRGTTQYGLHLFRHTSLSLSAFSDSDWAGCHDTRRSTTGFCALLGPNVVSWCAKRQPTVSRSSTE
AEYRALAQTACELTWLSYILRELHIYQPEPARLRCDNLSAVHLAANPGFHGRTKHMELDYHYIRERVALGLVEVYHIPAD
DQLADIFTKPLPRLAFTRLRNKLGVGTLQLPSLRGSVSN
>Copia-106_BRa#LTR/Copia 148-4515  [Brassica rapa]
MAMTTTDQKYKTITPYDLSANDNPGAIISQPLLNGSNYDEWAMNIRIALSSRKKFGFLDGSIPKPGTDSAYLEDWIANNH
LLVGWIKQTIEPKIRSSISTREVAKHLWDIIKKRFSQKSGARLQQLRNQLATCKQNGSSVDDYFGRLTKLWDGISECMNS
KRCSCNKCECDLNTAHDKEKETLQIHDFLSGLDDSAHGVIRSQLCAITPLPDLDSVYQTIVQNETMRQNAVKEVPVMSFA
SQANSNPFSKGGTVHTRDVSRQSENQTYRTGQGSRDSSRHCTVCGRTGHEAATCYKVVGYPEWWGDRSRNRGDNRSIASG
RGRGSHTRANSTQIGSANSAAVSANVSLTDSDRQGLSGLTDEQWTAVQHLLVAGKSTPQLSGKRNENVWILDTGATHHMT
GCLDLLDEIRDISPISVSLPAGSDVTTRKQGTIHLTSLLSLKNVYHVNGFHMNLISLGQLVTDNYLIGQVTDKLIILQDL
RTRMLIGAGEREREGLYRFHGIKTLTSLQTSVRDDLVLWHHRLGHPSPQVTGMVPAVRSTSSSRNVFLNQNCDVCLRAKQ
TRQTFPDSSNKAKEFFDLIHCDLWGPYRTTSFCGSRYFLTIVDDHSRAVWLYLLPDKTVVSKQIREFLAMIERQFSKKVR
RIRSDNGTEFLCLTRFFHENGIIHETSCVHTPQQNGRVERKHRHILNVARALRFQAHLPIEYWGECVLTAGYLINRTPSV
LLENKTPFDLLYGHAPGYKHMRVFGCLAYAHNLNRQGDKFAPRSNKCIFLGYPYGKKGWKLYDLEKQIVFVSRDVVFQED
CFPFATKGPPLSVDDGALTTPVLNPLVTDEEATENVHQETTLTEDIMTLNEEENVVTTTSDDMPQTETMGNPVESLGRGH
RSKQQSTRLRDYVIGTVSIKDPLSLDSDSPASQLPSGSPYPICNFVSCDRFSPNHRRFLMALTTNVEPRSYEEAMKHEHW
VKARNSEYGSLEISGTWRLEDLPPGKKALGCKWVFTIKYRADGTIERFKARLVVLGNHQKEGIDYGETFAPVAKMTTVRL
FLDFAAKNNHEVHQMDVHNAFLHGDLHEEVYMKLPQGFQPPGETRVCRLLKSLYGLKQAPRCWFAKLSESLRTYGFTQTR
SDYSLFVYNKQGVSLQVLVYVDDLIISGNSSEAIRTLKGYLSTCFHMKDLGAVKYFLGLEVARNSSGIYLCQRKYASDIV
EEVGLLGCKPAGSPIDQNHRLALAAGPLLADPERYRRLVGRLIYLSATRPDLTYAIHVMSQFMHAPRAEHWLAALKVIRY
LKGTLGQGILLRADPSFHLTGWCDSDWAACPLTRRSLTGWITQLGDSPISWRTRKQDTVSRSSAEAEYRAMAEITCELRW
LKGLLSEFGITHKEPMSVLCDSKPAIHISGNPVFHERTKHVEADCHFVRDDILRGLIKPFHVSTKEQLADILTKALGRKE
FDAFLLKLGIYNLYAP
>Copia-100_Mad#LTR/Copia 2231-6086 via tfasty with Angela6_TM, 1 frameshift. [Malus x domestica]
MPKIIPTIILDKRGLKGQRFLAWYRHIENVSKVKDILYVLKQSPPHVPPTKLASKEECQNYVRHYEDDLQAKCLILTSLS
EELMKLHKHMDTSCAMVESLHKMHDIETSNVRFSNVCSLMNAKMAKGTSVHKHGQKMEKIFKDLKSLGTSIDGKMAQDFF
LASLSDDFTKFIVNYKVNRFDHALNEMIDMCCKFEKGFKRDSGSENAITRKRLHKKKAKKSKGTCFHCGKDERWKKKYRV
RIASLMTRTFEETISVIESAFTVSSNSWIFDSGASQHICNTMQGLAGSRSLRNGEMVVRVGNGTKISAKAIGTYMLNLPS
GEVLELKNCLYFPSCIKNLISISKLLRDGHSVLFDKMSCTLYLNGRIISHGNMIEGLFHLETNSGMHCIESGNTSKPKRA
REEVNQEKMWHLKLGHVNLDKIRKMSKDGYIRPLGNDQMGTCECCLKGKMTKSPFTGKGERATEILGLIHTDVCGPMSTT
SRGGFSYYITFTDDHSRFGYVYLMKYKSESFERFKEFKNEVEKQTGKQIKTLRSDRGGEYLSNEFLDYLKECGIISQWTP
PGTPQLNGVSERRNRTLMNMVRSMMSSADLPVTFWGYALYTAAYLLNRVPSKSVPQTPYEIWHGRKPSLKHIKIWGCEAY
VKKLEAKLEARSVRCYFVGYPKETMGYEFYHPDDQKVFVARTAKFLEDEFVLKGTSKIESMEINEINDEPQTSTRQVDNP
VPEPLAPRRSERVSKPPKRYGLDNDFDELYLLGDNETKEDPRDYTEAMSDIDSKRWQEAMKSEMDSMYQNQVWTLVDPPE
GIVPVGNKWVFKRKIGVDGNVETYKARLVAKGYRQREGIDYEETFSPVAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNG
YLEEELYMTQPEGFVSKSEKTKVCKLQRSIYGLKQASRSWNIRFDTEIKTFGFTQNEDDNCVYQKVVGDAVVFLVLYVDD
ILLFGNDTAVLSSVKVWLSKTFHMKDLGDASYVLGIKLYRDRSRKLIGLSQSMYIDKVLSRFQMEQSKKGFLPVRHGIHL
SKSMEPKTPEEIRQMSGIPYASAIGSLMYAMICTRPDIAYAVSITSRYQSNPGSEHWAAVKTVLKYLRRTKDMFLVYGGA
TELRVEAYTDADFQSDVDDRSSNSGYVFTLNGGAVSWKSKKQSVIADSTTEAEYVAAAEAGKEAFWMKKFITELGVVPTI
TSPVTLYCDNSGAIAQAKEPRAHQKNKHFDRRFNIIRRYAAEGKVNILKVASADNVADPLTKPMSQIQLDRHMEKMGIRY
MGRWL
>Copia-97_BRa#LTR/Copia 17-4122  [Brassica rapa]
MGDIIAITEKPKGGGTIQCPMLTATNYTVWAMRMKIALKVHKVWESIEEGSIEGDKNNLAIALLFQSIPESLTLQVGELE
TAKKVWEAIKARYVGAERVREARLQTLMNEFERLKMKDKETIDEFGGKLSELASKSAALGVSIEEPKLVKKFLSSLPRKK
YIHIVASLEQVLDLNTTGFEDIIGRLKAYEERVAEEEEDPQEDSKQLMYTNAESQENQSNRGYNEYRNRGRGGRSSWYRG
RGRGRGGRDTSRIMCYRCDKLGHYASDCPDRLLKLQETEENKSETHDADELMIHEIVYLNEDGVVPSKYEANTSGDNVWY
LDNGASNHMTGDKRYFRILDDTITGKVKFGDDSRIDIKGKGSIEFVDRNGETRTMEEVYYIPDLKSNIISLGQATESGCD
VRLRGEYLTMVDREGKLLVKALRARNRLYKVRMGLKEDLCLYSTALKDSNKWHSRLGHVNQETIRYMIQKDLVTGISQVK
IEKEVCGSCMLGKQARQPFPKSTSYRATKILELIHGDWCGPITPKTAAGNRYIFVLVDDHSRYMWSILLKEKNDAFVKFK
NFKEIVERDSKAKIQTFRTDRGGEFVSHEFNKFCEETGIKRHLTAPYTPQQNGVVERRNRTLMEMTRSILKDMRIPNFLW
GEATRHSTYLLNRIGTRSLVNMTPYEAFKGRKPNVSHLRVFGCIGYAKVEKPHLKKLDDRSRVLVHLGTEPGSKAYRMLD
PKTHKVIVSRDVVFEETKGWNWSQNINEENRVGDFRITFGEFGNHGIQEEDRDGDKTPKREEDIETGDERNSRELITQGE
INENEEETEEEEPPLRRSQRQVFTPKYLDDYILLVEEEEGELLLNLINQEPRNFEEAQELEEWIKACEEEIQSIVKNGTW
ELVDLPRGAKAIGLKWVFKLKRNADGSINKYKARLVAKGYVQEYGVDFDEVFAPVARMETIRLLISLAATRGWEIHHLDV
KTAFLHGELKETVYVTQPEGFIVNGSEAKVYKLKKALYGLRQAPRAWNNKLNQILKELNFTKCSKEPSVYRREVDGGLLL
LAVYVDDLFVTGTSSDMIKIFKKEMSSKFEMSDLGKLSYYLGIEVHQHNGGITLNQKRYALRILEEARMKDCNPCQIPME
AGLKLSKALKEEAIDATNYRRNVGCLRYLLHTRPDLAYCVGVLSRYMQAPRVSHGAAMKQCLRYLQGTTMYGITFERTGS
KPLKIVGYSDSSHNVDEDDGRSTTGHIFYAGDSPITWCSQKQETVALSSCEAEFMAGTEAARQAIWLQDLISEIMGNESE
RVVIRIDNQSAIALTKNPVFHGRSKHIHTRYHFIRECVEKDQIKVEHIPGQEQKADILTKALGRIKFKEMRELIGVHDVL
TNDFKLKGE
>Copia-101_SB#LTR/Copia 41-4502 via tfasty with Copia-30_SB, 1 frameshift. [Sorghum bicolor]
MVSPKAKGSSPAPSDKKGKKHGGSSGSKPPKRGSRSPRRSPSPARSPSRRSRSRRGRRSPTRRPREVVVERVVRETSGSG
NWPQLTKTNYDSWSLLMKLNLQARHIWEAIEEDDVDFHDDRSALEAICSGVPQEMVPTLATKPSAKEAWEAIRSMRIGDK
RVRKSTAQNLRADYEQITFRDGESVEDFALRLSNIVQRLAILGDPEPERKVVAKYLRVARPRYRQLVVSIETLLDIDTLS
VEEVTGHLKAASDDEPSLAKDVSGKLLLTEEQWLERYKKDGESGRGSSSSGGRGKGRGRGRGGGGGNEQRAGANSAQGAG
DDACKACGKKGHWAKDCRNKKKQEQAHMAQDDEPTVMFAYADPSEQEDPFPVAPPPEFTIDDSGQLHFIERRVFAAFDDS
ANRDPKRWVLDTGASNHMTGARSAFSNLDIGTVGTVRFGDGSVANIEGIGTVLFACKNGEHRTIPNVYYLPRLTANIISV
GQLDETGFQVLVEGGVMRVRDEERRLLAKIHRSPGRLYVLDVDIAQPVCLAARGEEEAWVWHARFGHLHFAALRKMGREG
LVRGMPLLNQVEQVCSACLAGKHLRTPFPQCAAGRSSEVLQLLHGDICGPITPPTPSGNRYFLLLVDDYSRYMWICLLPS
KDVAPSAIKRVQAAAERKSGKALRTDRGGEFAATDFVNYCTELGVHRQLTAPYTPQQNGVVERRNQTVVGTARSMLKAKG
LPGEFWGEAVTTAVYLLNRSSSKSVGGKTPYELWTGSVPGVQHLRTFGSIAHMKVTTPSLKKLDDRSRRTIFVGYEPGSK
AYRVYDPVSRRVHISRDLVFEEKAQWRWDQEQRSGLDDFTIDHLPLPVPATTTTTSSSSGSSAGASSSNSPAQSTHGSPV
RSTRSATPAPAPGHGLPVPGSGGASPCTPPQQGADSVEFVSPPGAGASDALDADHDEDAPLRYRAVDNVLGSASPPGLAA
RELEEQLMLASEAEPATFEEAMRHENWRHAMLDEFTSIEVNDTWALVEPPPGVRPIGLKWVYKTKRDEAGLVTKFKARLV
AKGNVQRQGIDFDEVFAPVARLESVRLLLALAASEGWTVHHMDVKSAFLNDELLEDVYVEQPPGFVVKGQEKKVLHLIKA
LYGLCQAPRAWYSKLDESLIKLGFARSKSEHAVYLRGVGAHRLIVGVYVDDLVITGGNPHDISTFKEEMKATFKMSDLGL
LHYYLGLEVIQKEDGISVCQSAYAAKILQNAGLAGCNPSHTPMEERLKLSKSSSAPKVDATMYRSIVGPLRYLVNSRPDL
AYSVGYVSRFMENPTTEHMVAVKRVLRYIAGTLHFGCHYQRRKEAQLIGYSDSDLAGDIDTRKSTSGVIFFLGTSIITWQ
SQKQKVVALSSCEAEYIAATTAACQGVWLDRLLAEFRGEKVKAFTLKIDSESALQLSKNPVFHDRSKHIDVRYHYIRECV
EEDRVILESVGTVEELADILTKALGRARFCELRSKIGVINVQGMHKN
>Copia-103_SB#LTR/Copia 122-4405 via tfasty with Copia-28_SB, 2 frameshifts and 1 stopcodon. [Sorghum bicolor]
MGETSKEQDMMEWAFNQASGNLTWPMLTRTNYQGWASHIQCNLEGLYLWDAIVDDKAERRRDRLALGAMLRGVPQEMHSM
LLNKKTAKEAWAAIKTMRLGADRVKEVNAQKLLAEFEAITFKPGETIDDFAIRITKLVTDLRGLGEESVTDARVVKKFLR
VVPPRYSQVAVAIEMFKELKTLTMEELIGHLRAAEERFEPALEQVTEKTSKLLLTEEEWAERNKARMVSESSSSVTKGSG
GGGHYVKKDKHWKKKNNGGGDGRDPDTGAPRRKGKCRKCGVYGHWGKECKNKPQKDRHEVAHHANTDGDNGALLVAQVCN
VVRSTGVSTQQVFLNQERVYPSSYDVGAWVLDTGATNHMTGCREALASLDETVRGAVRFGDGSKVEICGIGAVAIAGKNQ
DHRVLTEVYYIPSLRCNIVSLGQLEEAGCRVEMDHGVMKVFERVNGNLNVLIRAERMRRLYIMQVNLTTPVCLTAKMDDQ
AWLWHARYGHLNFRSLRDLGRKEMVEGIPLIQHGEQVCDGCALGKHHRAPFPRASAYRASTGLELVHGDLCGPITPATPG
GKLYFLLIVDDYSRFMWIELLRTKDEAFAHFKKIKTAAESESGKRLKAFRTDRGGEFNSGVFTVYCNEQGVKRNTTAPWT
PQQNGVVERRNQSVVEMARCMMKSMQVPGRFWGEAMSVAVYLLNRAPTKSLEGKTPYEAWYGRKPGVRHLRTFGCLAYAK
KLGPGVSKLSDRSTPGVFLGYEVGSKAYRIFDPVKQKLIISRDVIFDERKGWNWGEKGTAETAGGPAEAETEPSFSVFYP
DEEQATVAHPTTGVDGDFSENPEAAVEPAEHSEPGSPVHSIPPHGGHGDASPHTPGxSISGSNQENIIQWATPPTGGEVD
SEGVPQRYRTIPDLLESTEPYQLEYSGVCLVAAEEPCTVDQALSELCWRNAMKAEMQAVEANKTWEVSDLPRNHKAIGLK
WVFKVKKDPEGNVVKHKARLVAKGYAQVQGVDFDEVFAPVARIETVRVLLALAAQGGWQVHHMDVKSAFLNGDLSETVFV
KQPPGFIVGNSDKVLRLKKALYGLRQAPRAWNAKLDKELLALGFVKSNMDHAVYKRNSKTSPLIVGVYVDDLIISGPNVQ
DIVQFKAEMKNKFSMSDLGLLSYYLGIEVKQGDAGIVISQGSYAVKILETAGMVTCNACDTPMEPRLKLYKTKEGEVVEP
TTYRSIIGSLRYIVNTRPDLAFSVGMVSRYMEAPGKAHWAAVKRILRYLKGTIGYGCKYGKGTALSPILLGYSDSDFAGG
VEDRKSTTGVVFFLGGSLVTWASQKQKIVALSSCEAEYVAAAAAACQGVWLSRLIADILGTKAASVKLLMDNMSAIALSK
NPVHHDRSKHIDTEYHFIRECIEEGKVEVEHVGTADQLADFTKSLGRVRFVELRSALGVVEVQQLRGR
>Copia-103_BRa#LTR/Copia 10-3845 via tfasty with Copia-5_EPa, 79.9% SW:3854, 1 frameshift due to 60 AA internal deletion [Brassica rapa]
MKINALPPSVKTPMLTATNYAVWSLRMKVLFRFHEVWETIDPGSKDQKKNDLATILLFQGIPENLILQVGEQDSPKGMWE
ALKAMNIGADRVIEARLHTLMIEFDHLRMKDTDSIDTFSGKLSEFAGTAASLGHTIEEAKLVKKFLSCLPSKFLQLSATL
EQVLDLNNTRYEDVVGRLKAFEERLRGEERMRGEKFEDNGKLLYSDHGTKGRGRGSNRGRGNRGRGRGSNNSGDKSKEKR
DYSQIECFNCHKKGHFASVCPEKKEDQELNNTETETSDKALYMHEVVFLNEGKVIPKKLEADNKEKGMWYLDNGASNHMT
GERSFFTELNENVKGKVKFGDGSYVDINGRGSILFEAKTGEQQLLKDIYYIPELKSNILSLGKATEQGCDVRMRDNYLTL
RDPSGRLLVKVLRSPNVGKQTRYPFPSSTTYRSSNALELLHADLCGPISPATLSQNRYIFVIIDDCTRYMWSILLKDKSE
AFERFKIFKALVEKEVNKKIVTLHTDRGGEFTSNEFRDFCNVNGIKRHLTAPYTPQQNGVVERRNRTLMEMTRSMLKAMK
VPNYMWGEAVRHATYLINRVPTRALKDQTPYESLRGRKPSIGHIRVFGCIAHTKVDSVHTKKLDDRSVTLVHLGIEPGSK
AYRLYNPSTRRAVVSRDVIFNEEACWNWKKEHEQEETESGNFSMTWGSSHDVGNGSYSVETQQDVTEDEAQHQDDNAETE
ETEPSIETGPRRSSRQVNTPKYLEDYVLIAEIEGAMLLLSIDDEPSTYQEAKRYARWIKACKEEIESINKNKTWTLVSKP
HGVKIIGLKWIFKVKKNADGTINKFKARLVAKGYVQELGIDYEEVFAPVARIETIRLLISLASAQGWEIHHLDVKTTFLH
CELNEEVYVSQPKGFEKKGEEHKVFKLSKALYGLRQAPRAWNTKLDQILKGLGLSRCSKECSVYRKQEGKLVLIVATYVD
DLFMTGSSTSAVKEFKEAMAKKFEMSDLGLLTYYLGIEVKQGSNGITISQEAYAKRVLEEAGMDSCNLTHIPMEFGLQMS
KSLEEAEIDSTQYRRRIGCLRYLMHTRPDMAFSVGILSRYMQSPRESHGNALKQVLRYLKGTLNYGLEYKRERNQKLSGY
SDSSHNTDPDDGKSTTGYIFCIGETPISWCSQKQEVVALSSCEAEYMAATEATKQAIWLQELMSEITGSEEKKTVIRVDN
KSAIALAKNPVFHRRSNHIHKRFHFIRECVERGLIDVEHVAGTKQKADILTKALAKIKFKEMRDLIQVQENGLKLRREN
>Copia-132_AA#LTR/Copia 61-3582 C. 180 AA internal deletion near C terminus [Aedes aegypti]
MEEEKAERVFLPLFDGTNFAAWKLRMLILLEEHELVECVETYAADVPELQEVDGDSEAVKKTKELARERRKKMDRKCKSL
LVSRIHDSQLEYIQDKPAPKDIWNALRRVFERRSIASRMHLKRQMLTMRFESGSLQQHFLRFDKLVREYRATDAVLEEID
VICHLLLTLGSAYATVVTAIETMPEENLSLEFVKCRLLDEETKRKGVEMCSPAASGEAAFSGSKKPPKTYRMKCFGCKQE
GHKLSECPMKKKNSNKSEKSKAHLAEQGGVCFVGCSRGSEIQCGSRKVNWFIDSGCSDHLVNDKSLFDDLKVLDSPIEIA
IAKNEQCIVAKHSGTVRVYSEVNGKQIECTVKDVLYVPELRCNLFSVMRVDDAGMKVIYEKGKVRIMRGSEIVATGARVG
RLYGLNFSTVRESVNESLLTCGRIPKSLELWHRRFGHLNARSLEKLIRDEMVTGLKVDGAVKTKDMVVCEPCVVGKQTRK
PFAVRDGKRSSRVLELVHSDVCGPVTPVGVLGVKYFVTFTDDWSHFAVVFLITSKDEVFECFQTYEALMSAKFERKIHRL
RCDNGGEYKSKQFERFCKSKGIQVEWTVPHTPEQNGVSERLNRTLVEKARSMLEDSGADKRFWGQAIQTAAYLLNRSPSS
AIAPNVTPYELWEGCKPDVSKLRTFGCGVYVHVPKEQRTKLDAKAWKGIFLGYANNGYRVWNPKAGKIVHARDVDFLEAS
EAKLQVDRVLPNDVFSVPKRKEQNDDSDDEEEASSVSDGESNEEFDSFRDDGSSDPGEGTVAVDGTGSSGEADRSSGETG
RPQRNRKVPPWHRDYEIDYAAYALNATSYVEDLPNSIADAKRRSDWNLWQAAIIEEMDSLKKNGTWKLTKLPENRTPITN
KWVFKVKRGVDGAPDRYKARLVARGLSQKYGIDYSETYSPVAKLDTLRTVLALANQEKLVVHQMDVKTAFLNGTLEEEIY
MVQPEGFEQGRELVCRLEKSIYGLKQASRAWNERFHNFVEERLKFKRSENDQCLYTRRIGSEKLIIVLYVDDILIAGSLK
AVKMVKDLLSREFEMTDMGNIRSFLGMKIDYDLEKGVMWLIRLLEDLWWKPKEATTFYEDNQSAMRIIENSKDFGRLKHV
DVKFHFLRDLVKQKRIRLRFLTSSDQPADMMTKGLPVAAFQRHRAAIGLSSCSG
>MTCopia1#LTR/Copia 72-4439 (2 stopcodons) [Medicago truncatula]
MVRGNTAANGGANGGTMIPPPLDPSQQPGNVYYVHSSDGPSSVTVTPVLNNSNYHYWARSMRRALGGKNKFDFVDGSIPV
LMEFDPSFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENAMDVWNELKERFSQGDYIRISELQCEIFGLKQDSRSVSEFF
TALKVLWEELEAYLPTPVCACPHRCTCNTGVLNAKHQHEITRSIRFLTGLNDQFDLVRSQILLMNPLPTLNKIFSMVLQH
ERQFRVSIPVDESKILINSVNKFQGRGRGNGSTSGGAKRSCSFCGRSNHTVDTCYKKHGFPPNYGKNFATANNSSLEMHE
EREDLDDSKSCKGSDSFSMTKEQYEHLVNLLQTQQSSSSKVNHVTNHVTSGISTLSYALNHCSFGSWIVDSGASDHICSS
IKAFDSYQSIKPVHIKLPNGNITIAKISGTVQFSSGLVAKNVLYVADFKLNLLSVPKLCVDDDCIVTFDNDKCLIQERRN
LKMTGLADLIEGLYFLTTQASPSTKPQSVIASINSQSSSFLPQEALWHFRLGHLSNHRMISLKQSFPCIKIDDNSVCDIC
HYSRHKKVPFHLSVNKANKCYEMFHFDIWGPVSIPSIHGHKYFITALDDHSRFTWIILCKSKSEVQKHVQNFIIMIENQF
GCHVKTIRTDNGPEFLMSEFYSSKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPKQFWSYSVLHAVYIINR
IPTPLLQNKSPYFLRFGNNCDFNDFKVFGCLCYASTLHNHRTKFDSRAKKSLFLGYKQGVKGAILFDLNTKIIFVSRHVT
YHEHILPYSNSNQPFQWQYHSNQPISSAIEPVTNLNTNxNESTVTKPINPEDSESEISSNIELDDHIQPHSQTLPEPDSL
SLRKSTRPIQKPTYLPDYVCNLSKESDNSSSSGILYPITHYHSLNSLSPSHQKFALAVTNAAEPTSYNEASKQECWVKAM
ESELDALKHNKTWIFVDSPPNIKPIGSKWVYKIKHKADGSIERYKARLVAKGYNQVEGIDFFDTFSPVAKITTVRTLLAL
ASINSxHLHQLDVNNAFLHGDLSEDVYMTIPQGVVNTKPNQVCKLLKSLYGLKQASRKWYEKLTSFLISQGYKQSASDHS
LFTLHSDSMFTALLVYVDDVILAGNSMDEINKIKVTLDAEFKIKDLGQLKYFLGIEVAHSKLGISICQRKYCLDLLHDTG
LLGSKPVSTPLDPSIKLHQDTSKAFDDIFSYRRLVGKLLYLTTTRPDIAFVTQQLSQFLSAPTITHYEAACRVVKYLKGT
PDQGLLFRRDSILQILGFTDADWAGCPDTRRSTSGYCFFLGSSLISWRAKKQHTVSRSSSEAEYRALSFASCELQWLLYL
LKDLGVSCIKSPVLYCDNQSAIHIAGNPVFHERTKHLEIDCHFVRERLQQGLFKLLPIKSQSQLADFFTKPLPLKNFHSF
ISKLNMLDLYHAKLEG
>MTANGA#LTR/Copia 46-4043 via tfasty with Copia-135_AA, 2 frameshifts and 1 stopcodon. [Anopheles gambiae]
MDGGKFCIEKLRSGGYETWRFKVEMLLVRENLWKFESTAAPESLTETWKEGDAKARATIALLVDDCQHPLIRDCKTAKGT
WDALQKHHQKTTMSTKVSLLKKLCKAEYDESGDMEAHLFRMDELFSSLMNAGQELDSSLKVAMVLKSMPESYDHLTTTLE
TRSDDDLTMELVKSKLLDEAQKRMEKSHQSESILRVGPEKKITCHRCRKPGHMKRDCPMESNNTPTSTTMRDYSRKNENC
SSSGGQRESLKPKPKGKVAKSSEFSFTVGVVSKKREQPKSWIIDSGATSHMCCDRAFFDELKQSTGVSITLADGNETVVK
GVGSGHLYYYEENGDRRKITLNDVYYVPELESNLISVGKLVNKGAKVTFDETRGCVVECEGILATVGQxSMKVVHHTKDC
IHSWHRKLQGHRDPNAIQRVAREGLAKGISIKKCDIFQTCECCVEGKIARKPFPPITERQTTRVLDLVHTDICGPMNTVT
SGGSRYFLTMIDDFSRYTTVYFLKRKSEAAEVIEEYVTMVHNRFGRNPIVIRSDQGGEYKSKRLGQFYRAKGIVPQFTAG
YSPQQNGVAERKNRTLVEMARCMLIDAKLGYRFWAEAINAAVYLQNISSSRSIEKTPFELWYGKQPDYSNLHIFGCSAIV
HVPAEKRSKLDPKGKKLIFVGYADNHKAFRFVDPTSNKITLSRDAKFIEMEDFEHAAINRSKKTNPQIVEYEFDDDFPFD
DDSDFDDDVGDRLESEEEDSTDETLIEEELTDTDSSMCDSTNEDDGDDGHTLERAAEELTVRRSSRSTKGVPPQRFRETT
GMVRIFLNERILITQEYCEPRTFEEAMSCPDRDLWKRAMEEEIKSLHENATWEIASLPKDRKAVGSKWVFKRKMDGDGKI
VQYKARLVAKGFSQVYGADYDEVFAPVAKQTTFRTLLSIAARRKLIVKHVDVKSAYLYGDLAETIYMKQPTGFEIGSKND
VCLLKKSLYGLKQAGRVWNQTITEVLRSLGFHSSEADPCLFVKNKRDRWSFILLYVDDMLVACSEDREYEDIENTLKRHF
KITTLGDVRNYLGIRIERGQNGEYLLDQASYIRRIAKRFGQEDARPSRIPMDPGYPKIQQKEEKPMPRNDDFQSLVGALL
YVAVNTRPDIAISASILGRKVSNPCQADWTEAKRTLRYLNSTADLKLKLGEDGQLEAYVDADWAGDHQDRKSNSGFIFHL
GGPISWSARKQQCVTLSSTEAEYVALAEACRELLWLQKLMKDVGEKTTGPIVIREDNQSCLAMLPAEGGCRRTKHIDTRY
NFIRDLVNNNVIQVQYCPSERMIADALTKPLSKVKLVTCRKKLGLQSLQLEE
>RLG_scAngela_2_1_pol#LTR/Copia 3193-6354  [Saccharum hybrid cultivar]
MFLTYSDVVSGGKCIVNIANIPTLNGTNYRVWREKYELELALGEVDYAIISPCPTEPEDPVREENESNADFTARKRDHTE
IRMKYDLEHRQWTLSNRKCLLVAKATIEEQIRGSIPECATATEYLDKIKSQFTGSTKATASSLIKKLVNEKYTGVSIREH
ILKMNTTASKLKEMNLKEDDFLIHLIFASLPKEYDTFIVNYNMQPERWGIERLISMCAQEEERIKSSQNESAHFVKDNKR
KNFNSKNSKPQGKPKWDKASSSNSQGKKPQKPENQQSNSYGGAEKDQCKHCFKKGHYKRDCPDFLKSLLKRGDEFITFVD
ESLYLCYAKSTWWVDSGATTHVANSLQGLSGTRTLQRRERTIKVANGVQADVEAIGDLSLELNNDFVLRLKEVLYVPSLR
RNLISVSKLDDDGIDCHFGDGKCKILVNNKCVGLAFRQDKLYLLSLDENANNVCDENMNDSPSANVTKKQKRIDDASSKL
WHCRLGHISRGRIERLIKESILPHLEFSDLEQCVDCIKGKYVKKIKKNAKRSTETLEIIHTDICGPFPVKSVDGYDSFIT
FTDDYSRYGYIYPIKERSEALDKFKIFKAEVENQHDKKIKIVRSDRGGEYYGRHTPYGQIPGPFAKFLQKNGIVAQYSTP
EEPQQNGVAERRNRTLMDMVRSMISYSTLPISLWMEALKTAIHILNRVLSKSVPKTPYELWTGREPSLNHLRVWGCPAEA
KVFNPNIGKLDSKTVSCHFIGYPERSKGYQFYCPDRHTKIVETRHAVFLEDNMIRRSIVAREISPQEKRVHVPTPMVEEP
FFTLPVAIEPTVQDTIEPTPVASSPVATINEHEEPVLEEAVLEEPIEPNVAHEEEQQQPNVEQVPEAPRRSQKTRMSAIS
NDYEVYETEEFQMGDDPTSFEEAMRSDHSSKWLKAMEDEMKSMSTNKVWDLEIIPKGAKTVGCKWIYKTKYDSQGNIERF
KARLVAKGFTQREGIDYNETFSPVSCKDSFRIIMALVAHYDLELHQMDVRTAFLNGDLEENVYMAQPKGFVVKGKENMGC
RLKKSIYGLKQASR
>RN107#LTR/Copia 982-4988 via tfasty with SC-1_pol, 1 frameshift and 3 stopcodons. [Oryza sativa]
MLTSANFKEWKENVLIVLGVMDLDLVLRKEQPILLDKSTKYENMEYERWDRSNHMSLMIMKRSIPEAFRDSASEEVTTAK
VFLETLQKRFARNEKAETSTLLAKLISMRYKGKGNMREYIMEMSHLASKLKALKLDLSEDLLVHLILISLPTQFNQFKVS
YNCQKDKWTLNELITHCVQEEERLKQNRTESAHLSLTSNNKKRKSKEAADVQPPLKKRENNRGEELCYFCKKEGHKKKKC
TKYHAWRAKKGTIFATLCSEVNLISVSKHTWWLDTGATVNVSVTMQGCLNCRKPSDVERFIFVGDGKPVEVEALGTFRLL
LKTGYYLDLEETYIVPSFRRNLVSICQLDKSGYHCTIGDGLFGLFQNSNKVGTGSLIWNDSLYLLDTVASFNEVLHTCSR
GVKRKLTNENSSSLWHKRLGHISKQRIQRLVSDGVLDQLDFTDFDVCVNCIKGKQTNTRKLSAQRATDVLELIHTDICGP
FPTASWNGQxYFITFIDDFSRYGYIYLIHEKSQALNVFKNFKAEVENQLGKRIKSVRSDRGGEYYGRYDGSGEQCPGPFA
KFLEECGVVPQYTMPGSPRMNGVAERRNRTLKDMVRSMISHSTLPKSLWGEALKTAAYLLNRVPTKATNKTPYEHWTNKK
PSLNHVRTWGCPAEARPYRPNEKKLDFRTISSYFVGYAERSMGYKFFDPTTKAIFETGNAKFFEDVEFARGDKVRDIIFE
EIHEEEFISFPLVINNNQDQVTLPDFVEANQENVLENSSQNQETTxEQTQQSQELVPLRRSTRERKSAIPDDYIIFLQEH
EGDVGIEEEDPINFQKAIQSPNAQKWINAMNDEFKSMKDNDVWDLVPLPEGFKPIGCKWIFKTKRDSKGNVERYKACLVA
KGYTQKEGIDYKETFSRVSLKDSFRIIMALVAHFDLELHQMDVKTVFLNGDIDETIYMVQPENFVSGEANKMFCKLKKSI
YGLKQASRQCYHKFHEIVISFGFEINAVEDCVxHKFSGSKVVFLVLYVDDILLASNDIGSLHETKRFLSKNFEMKDLGDA
SFVLGIRIYRDRGRGILGLSQKSYIDKVLERFGMQNCKPGDTPVAKGEIFNLSQCPKNEFETKQMQKVPYAALIGSLMYA
QVCTRPDIAYIVGILSRFLSNPGLDHWVAAKRVLRYLQRTKDYMLTYRKSDQLEIIGYSDSDFAGCQDSRKSTSGYIYLL
AEGAISWKSAKQSLVASSTMAAEFIACYEASNHGLWLRNFVTGLRIVDYVDRPLKLYCDNKSAVLYSNNNRSSTKSKFID
IKFLVVKERVQSGQLSIEHMCTNSMVADPFTKGLAPKVFYGHVARMGVGLIEEIQF
>RLG_scMaximus_1_5_pol#LTR/Copia 2458-5622  [Saccharum hybrid cultivar]
MTGDPRMFTSLEEDGVCQDKITFGDNSKSKVKGIGKVVISNDHSLSNVLYVVSLSFNLLSVGQLCDLGYQCLFGPNEVVV
TKIDDKQVIFKGFRYNNLYLVDFTSEDANLMTCLFTKTTLGWLWHRRLAHVGMNTLNKLLKKELVRGLKDVKFEKDKPCS
ACQAGKQVANTHPTKAYMSTSRVLELLHMDLFGPTTYKSLGGNLYYLVIVDDFSRYTWTFFLHDKSEVASCFKKFAKRAQ
NEFEVKIKKIRSDNGKEFDNTNIEAYCDEIGIKHEVSSTYTPQQNGVVERKNRTLITLARTMLDEYNTPEKLWAEAINTA
CYASNRLFLQKFLCKTPYELLNGKKPDVSFFRVFGCKCYIYKKRQHLGKFQRRCDIGFLVGYSSKSKAYRVFNHATSLVE
ETYDVEFDESNGSQGAIENCDDVGDEALREAMKNMPVGDIKPKDDEDDVQIVNPPSSSYVPQDDDKNERVENEDTHVSHH
QAKAQAQDVDAPHPTPQMVDRRNSPLLQAHPQDLIIESPTKGVMTRSQKFNSFVEHHSFVSCLEPKNVEEALQDPDWVNA
MHEELNNFARNQVWTLEEHPKGARVIGNKWVFRNKQDDQGVVVRNKARLVAKGFSQVEGLDFGETFAPVARLEAIRILLA
YASHHDMKLYQMDVKSAFLNGFINKLVFVEQPPGFEDPRYPNYVYRLSKALYGLKQAPRAWYERLRDFLIEKGFTIGKVD
TTLFTKKFKEEIFICQVYVDDIIFGSTNEDYCKEFGELMSKEFEMSMIGELTFFLGFQVKQMREGIFISQEKYTKDLLKR
FKMEECKPIKTPMPTNGHLDLDEGGKPIDQTLYRSMIGSLLYLTASRPDIMFSVCMCARFQACPKEPHLSAVKRILRYLK
YTPSIGLWYPKGARFQLVGYSDSNYAGCKIDRKSTSGGCHLLGRSLVSWSSKKQNSVALSTAEAEYIAAGACCAQILYMK
QTLLDYGVILKKVPLLCDNESAVKIANNLVQHSRTKHIDIRHHFLRDHIAKNDISLEGVRSENQLADIFTKPLDEATFCR
LRSELNVLDSSNFKR
>LCCopia1#LTR/Copia 163-4258 via tfasty with OSR3_409-4902, 1 frameshift.  [Lotus corniculatus]
MATEKFDVLFVRLNGKNYSTWAFQFEIFVTGKDLWGHVDRSNPAPDKDKHKTEHAKWEVKDAQVKTWIISSVDPSIVLNL
RPFKTAADMWDFLKKIYSQNNAARRFQLEHDIAISQQESLSISEFYSHFTNLWAEYTDIVHENLTADGLKSVQLVHETTK
RDQFLMKLRSDFEGIRSNLMNRNPVPSLDSCLNELLREEQRLLTQTSMEQQKSTSVPVAYAAQGKPRGRDMSAVQCFCCK
GFGHLAANCSKKYCNYCKKNGHIIKECPIRPPKRPVTAFTASVGSSFPSNSANSAFVQQNAPAPVQTLTPEIVQQMIISA
FSALGISGKSFSTSSPWYFDSGASHHMTNNAQFLTDVTKYSGNLMIHTADGNQLPITATGDISSTLTDVFVSPGLTSNLI
SVGQLVDNDCRVEFSKSGCLVQDQHTGKMIGRGLKLDVFFHSISLSQCLSLPSVSCNSANVDYQTWHKRLGHPNSVVLHD
LLKSGFLENKKIPSFSTIQFDCSSCKLGKSKILPFPTHHSNVEKPFDMIHSDLWGMAPVTSHANDKYFVTFIDDYSRFTW
IYFLRSKAEVFSTFKFFHAYVQTQFSSKIKILRSDNGGEYTSHLFQEFLQNNGILSQRSCPSTPQQNGVAERKNRHLLDV
VRTLLLESFVPTRFWCEALSTAVYLINRLPSPSLNNDTPFTRLFGHPPTYTNLRTFGCVCYLHLPPQERTKLTAQSIECA
FLGYSTHHKGFLCYDPSQCRIRVSRNVIFQENKYFFASHLDHSSPSISVLPLFSSSAIGPQSARPLLTYQRRGNVAPNLP
PEPPRPLQDPSLQADPVQAALPDLLRRSSRVRKPPEKYGFTSPLSLTATLSSVSIPSSYKQAMEHECWQNAVETELLALE
ENQTWDVVPCPPSVKPLGSKFVFSIKLRSDGSIDRYKARLVVLGNKQQYGLDYDETFAPVAKMTTVRTILAIAASQSWTL
HQMDVKNAFLHGDLKEEVYIKLPSGMPTLSPNEVCKLKRSLYGLKQAPRVWFEKFQSTLLGFSFTQSQYDPSLFLQRTSK
GIVVLLVYVDDIVVTGSDQEVISTIKQLLHSTFRMKDLGQLTYFLGLEVHYQPKGIFLNQHKYIQDLIQLASLTNVTSVD
TPMEVNVKYRRDEGDLLEDPTLYRKLVGSLIYLTTTRPDISFAVHTVSKFMQSPRHLHLSAVHRIIRYLIGTSKRGLFFP
TGSSLQLQAYSDADWAGCPDTRKSTTGWCMFLGDALISWKCKKQDSVSKSSTEAEYRAMSVACSEIIWLRGLLADLGFLQ
TQPIPLHADNTSAIQIAANPVYHERTKHIEVDCHSIREAYDRRVITLPHVSTAVQIADIFTKSLTRQRHNVLASKLMLVD
LPASI
>Copia-138_AA#LTR/Copia 139-4164  [Aedes aegypti]
MASSAKKAGIVQFAGDGFDTWKFRVETQLSAHGVRDVLDEDAPAETATEAVKKAFKEKDEKAKALLVAFIADSHLEYVRD
KATAKAMWKSLESTFAKKGFAAQTYIRRSLAMLRMEEGCALKDHFRDFDELVRQLKDAGANLTELDQVSQLFISLPASYD
VVTTAIENLEEKQLTLATVKSRLLAEEQKRNGRDTCSGLSNRSDGTVLAARTEKQKKGIREGKPKFAGKCYGCGAFGHKR
STCPKSRDQRVRAQAAEIPRDREVALIGSVPTVSSSAKSKIVWILDSGASRHMAKEPGVFYGMETLAEPVTIESAMDNGS
MKGAQQGTIKGIVSTRSGQVRLAISKVLFVPNLKFNLISLGALMNVGVDVEFMKDRAILTKDGEIIGEATKQGNLYYLTM
DVEIVGTALTTDDGVSKQDLWHKRYGHLSHRNLLKLQKAEMVTGMGKLKTEEAFCETCAEAKLVRLPFNGSRPPTSRPLE
RVHTDVCGKITPATFDGYQYFVTFLDDYTHFAVVYLMKRKDQVFEYFKIYQAMATAKFGVRIAALRCDLGREYFSSSQLA
YYEQHGIQVESTVGYTPQHNGVAERFNRTVSEKMRTLLLESGAPKYLWGEALYNAVYVANRSPTEALEVEKTPAEMWHGE
KPNVEKLRVFGSLAFSWIPKQKRSKLDPTGKRCVFLGYAPCGYRLWDPKARKQFVARDIRCNEVEFPFKITPAAQMSGCL
TEQSIPLVVPEFTESEGDGVEVPEIDPANEIEVAPDNITIADPQDDESEQEGEEAEDMVLEPSALPPQAVGKSSSQDGTT
PRTSGRECKRPGWFRDFMSSYSANTAVNISTQIPMCYDDIDGHPEATRWYQAVNDELRALNHNQTWTLVKRPATVVPVPC
KWVFAVKTDADGKPVRYKARLVAKGFMQRKHIDYEETFAPVAKLTTIRTILAVANTRDLEIHQMDVRTAFLNGKLTETVY
MEVPEGVKSKPDEICLLERSLYGLKQSPRCWNNRFNNFLQDQGFVRSNHDYCLYVRQQKEEIIYIIVYVDDLLIVAKTRA
TVEEIKRILKSEFEMADMGPLHHFLGIKVERDRARGVMKLSQTGLIDKMLQRFEMQDCKACKTPAEVRLQLTRANGDCQY
PYRELIGSLMYIMMGTRPDLCYIVGYLSRFQDXAGPDHWQQAKRVLRYLQGTKHHQLVYKRNPHKSPTEGFVDADYAGDE
SDRKCVSGYLLKVFGCTVAWSSKKQGTVAMSSTEAEYVAMSSCISEVIWMTGLMTDLSEAKNLRPVPVFEDNQGAIAMAK
KEETKRVKHIDVKFHFIRDAVADGRIQLVYIQSKHQEADILTKSLAAPLFQELRQKIGLYVI
>Copia-137_SB#LTR/Copia 55-4498 via tfasty with Copia-61_SB, 83.9% SW:4904, 1 frameshift and 1 stopcodon. [Sorghum bicolor]
MATSSDAATMLPLSLLPPVTEKLTRGNYSMWLAQVSANLQGAQLWDFTKPTSTPPPELLPATTTTDGKKSEPTANPEYTR
WLARDSQVRGYLFSSLSKDIFSQVATSTMAAEVWAAIQTLQASQSRAWIMATRMALATTTKGSSTTAEFFTKMKGLADDM
ASAGKKIEDDELISYILMGVGEEYEPVTTSVANRTDPISLAELQAQIVSFEQRRDIRGGSGGSHSSAMMSRRGGGQHNPN
NNRGRGNRGGYGRGHPRGGQGGGGRAGGGRGRFAGVQCQVCGLIGHAAARCYNRYDSNYDGTAPPKSASAATTTSYGIDT
NWYVDSGATDHITGDLEKLTVRDKYQGGDQVHAANGSGMAIDHVGHSVLHSQNRSIHLNNILHVPNAHKNLLSVNKLARD
NHVFLEFHPSHFSIKDQATAKTIFQGPCEKGLYPLKHYLHKEALGTFRPTKTIWHHRLGHASSKVVDQILHQHKLSFVKE
SNNNNNICDACQKGKSHQLPYPTSTSISSRPFELVFFDVWGPAPTSVGRHDYYVSFIDDYSKFSWIYLLRRKSEVFQCFH
DFLNMVERQFNHKILAVQSDWGGEYQTLNTFFKRLGISHHVSCPHSHQQNGSAERKYRHIVEVGLSLLAHASMPLKFWDE
AFLCAVFLINRILSKVLNNASPYERLYTTLPDYTYLRSFGCAVWPNLRPYNSRKLEFRSKRCVFLGYSNLHKGFKCLDPT
EGRIYISRDVVFDEHVFPFTFLHPNAGARLRAEIDLLPDILKNPSSTFGNALIHDHTMINTTYPNVVSSTMFSTDETGSD
SSKRRSTSPYIVCGRAPTTGATIEGDLPTDPDGGPSVAGESASGSQAPPIPEPLPSDLTLSGGSPGSSAAANRTTAPSSN
TAPAQTDPGAASDSHDQAAGGTTLSPPVGSPPVGSSAAQPGSSTSTEIVDTSTVELAPTQRVTRLQRGITKPKQYFDGTV
RWCMLGTIGAxEPSTVEDALGDNKWVQAMDHEHTALINNRTWHLVPPPKGKNIIGCKWVYKIKRKADGSIDRYKARLVAK
GYRQQYGIDYEDTFSPVVKAATIRLILSLAVGKGWTLRQLDVQNAFLHGLLEEEVYMDQPPGYRSEKYPNYVCKLDKAIY
GLKQAPRAWYARLCNKLIQLGFTPSKGDTSLFHFRKGTLIMFILVYVDDIIVASSSQQATDALLKSLEQEFALKDLGDLH
YFLGIEVKKMGDSLFLSQSRYATDIIKRAGMDKSKPVDTPLSITEKLSITEGEALGVEDSTRYRSLVGALQYLTLTRPDI
SFAVNKVCQFLHAPTSTHWSAVKRILRYVKGSLSMGLKIRKSNSMLISAFSDADWAGCVDDRRSTGGFAVFLGPNLISWS
ARKQPTVSRSSTEAEYKSLANATAELIWIQKLLDELKIDHPPAARLWCDNIGARYLSANPVFHARTKHIEIDFHFVRERV
AQKLLDIRYIHTRDQLADGFTKPLATSRMKEFRHNLNLVSG
>Copia-143_SB_env#LTR/Copia 3804-5741 [Sorghum bicolor]
MALNAYISPWCLWIQGEIMTRDGRIEPRAKHKNDPTAMRYYKRTREARRAAGSGSGSGSGGGRRKSGRLADRAPADYAEG
SDDDDSSSASESDQFRVEARGEIESGHESGNGQESEDSDEDHVQAQNVPPAQQPGQGGGRHLGHPRVYAPNVPDFVQRAN
YKGTGMTKRVKTLRSEDPRTQQQVMYDYRFRTLFQIDFYTTVILTRNPVVIKSQWAKWKELKAHKKPSLDRAVDICARIG
ASEIMSFKHDWNTEIVAQFYATLYVDSDRVMHWMTAGECFSVEYAAFAGYLGFDEEDLARDKIHDEIVTPPERMGQLYIP
GFRGAVVGKVKGLFPTYRYLDRMFRKTIACKVGDKGNVGDYSRNLLMRMLPDARPFSVFDFIWNEIKSVGERPVKGCGYA
PYITYMIRQVTGYSFEYDKQHKVMKIAADLAEIDLSPPGAAAGGGSAAHPTPPRGPSRSSSRGRAPPSPIRKFFSAIFGM
CKDMNAIKTRQHHEREARRKDTRTLKELAQKNELPTPRSPISDSAASEPETFEQQQARYEREFQQEFGGYSQSQPVPPQV
QQGQTDQGEQPEAPLQQQSQEHWWDSFLYFGESHDYDHGYGGAGTSSGFGGYGHLGDPGQSGSRPPGTSRSPDQRYDDDD
DDDDDE
>ENDOVIR1_env#LTR/Copia 6029-7459 [Arabidopsis]
RGNRKFSYPNPKTLAMVRTRGDSRRPTRAPANTRAVARTRSEARRAAPSAPATTPIVGRTRRDARRTAPTIISDDSDSSS
DDAVPDPKAARSPVAVPSKQAAEAPPPPSHAPDDSPAPVSDLPPKTSTAPPINDPAPDLLRNAFSSRGRLPYDPSDRCSI
HRHHQAERDAADPSIWTPPYEPLTIQFLTSQGVERYKDFKLRDPYEQRYVPRGPPEMRDMMKVIEDNHLLDTVAEIDPFV
KEVIWEFYANFHIFNEETKKSKVFVRGKMYEFSPQMINKTFRSPAIKWHAKAEFERVTMSKHALAKYLSDGKVVTWKDLR
TPVMPTHLAGLYLICCINWIPSKNNSNVTVDRAKMLYLLNERIPFNFGKLVYDQVEKAARSPGQIQNILPFPNLIYRVLM
FQRVITLENYEKPGPHPKLFNPDVRGGIEHPKRRGEYLFGTSLPGDLRHVSTLLTTIATRIEGMISSLLLSVCFPC
>COPIO_gag#LTR/Copia 52-2220 [Oryza sativa]
MSGQTGDGKDGDKGATFPYDYPPTSTSYVSTYSGKAPYFNGTDYAAWKHKMKMHLKSINPSIWRIVEKGYVLQNPEDPTK
EDDENEHKNAQAANAILSALSGSEFNRVDGIESAKVIWDTLRNLHEGTDSVRESKVEILKGQFERFVMLDGESPSDMYDR
LSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIRERPDYKTLTPHDLLGRILAHDMLVQESKDVIQYINQSST
TSIKKEDLALKAKEEEEENRKSKSKAEIDDEEMALFVKKFGKFMRRSGFFKGGSSKHYSNKSSGRHSARVCYVCKEPGHF
IADCPHLKDGSHIKEDKKKGEKKDEKKEKHKHSKREHYGQAHLGMIFGSDSESSSSDEEGVATFAVKPSSPPRLFDYSSD
EDAPICLMAKEPKVPSPLKSFNVDLVSDEEDEVEDEVMDDELFKSITKESLPHLSELLGRIENQYATLERQEALLIREKE
RSHELKSELAKEREKNEALVRLYKQTKESHANLEVANAQLQERVDGLDKAYLSLEEKFETLKNSVSLPSEPSCSKIVPSN
EPCVRCKDIDIEACATNSISLSALQKQNEKLMGLLHNGLLKCHMGSKALKEYLGYQRDNFNHEGLGYVPPPKGKVDKSVM
IKRPQGLSNFVKAKSILPNDYASHCSFDASYVLRKNASGRVVAKYVGPRGKNISIKRVLWVPKALVTNMRGPKQVWVPKT
RN
>Copia-36_BD#LTR/Copia 882-6745 via tfasty with Copia3_HV, 69.5% SW:3712, 3 frameshifts and 7 stopcodons. [Brachypodium distachyon]
MADDDGAPTVKPQETEVIDDNAPLTFKSTKLLLDSMQKVILDSVDKKISGHLPNKASSSTTEPSYVKPPSAVDLTKEDSD
AKARNKAKASEESASKSQGRGGYGLYSEVAPPPQYNHRHHNLPPMYNQGEPPMLTSTNYVDWFHSMRTHFKSTSTELWRI
VEEGYFVHDPKNWSPREYVDNQLNEHAIGILLKVLPLEYRTFVRGVDSARDAWKLISDHFDNNESVRKSKFEGVISECKN
FFMKDGEVPDELYRRVITLGNKIKDHGSRDINDEWLKRLFIEAISPHxEIHAAMIRQRTDYYSLTPSQVMGEFVVMDILK
KTSEDNLIRAKFLSQSSSFALKANVTPTSTPCEAPQQEEVEITKENCHYEFSDHMALAAQAFWKNKKFVKTNTFNPNNFY
NNKGASSSKPKGQRSHKCYNCGNNDHFVAECIYEKREENGGRLILKGKTKPFFQKKPTKKRQPRMLLVQEEYTSGEEDDD
DEKSTEMANIAIAPSLPSIFDSPNENKNRSPKCLMAKTSSVITPPTKHVIPKSLSLFDCLEESSVVKHSMNEFEIFMASL
EGETKKRFEDLLEKLGEAQAIIEEHDELMDEKVRLECIAPHEIAELNEALEEEQANREAIEELLSKELAKVKDSYDNAIS
LANEYLGKICEVENGHRNILDDFDKLGKDHKSLTSEYKSLKESCDHLLYSLVKELISNDKDASTNPYCKHTYMIEKNTRL
KTQLEKGLATCFQGEKNLHDLLNDHRKAFGLEGIGYNPNEKNNNKKKAKAHPRTNAYFVKEGDAAKEKPKNKKGGKATYD
NSAGDFNPSYVLCRINDGHVYAKFVGSPYGYAHWSIWVHKTLVANAKGPIEKWIPKTKTxTCRRYASDGSLWIMDSGCTN
HMTGSKELLVDAKMSTSRYKQVTFGDSSQSTVLGLDKVVISPDTSIENVILVESLSYNLLSVLQLAHMGFYSFFDTTSVT
LLWSKTLKVAFVRYVENGLYVVDFGKKPTREETCLMTKLDVGWLWHRRLAHVNMRSLQSLLKGENVLELTNVSFNKDRVC
SACIERKLHEKAHHHKTIITSTSPLELIHMDLFGPPTYDSICGKKYCLVIVDDYSRYTxIYFLKHKSETQQTVIDFANEA
xRQYNANIMTIRSDNGSEFKNYTLIEFLSDEGIKRQYSAAYTPQQNGVAERKNRTLMDAARTMLAEFKSPYNFWTEAINT
ACHATNRLYLRKILNKTPYEILMGRKPNLKYFRVFGCKCFVLKKGVCLSKFEPKTYEGIFFGYASNSHTYRVYNKSTGCV
EIFCNVEFDENNGSHVGQVDVVDIDDEISSQAIRRMGIGxIMPVEDPRMEEGEGQCSTQVGPHLHKIPHVDEQVDQGQDQ
ANVDVGDSSPNDVQDxDLQDVRASIEPQDQSQEAMERRAMKIASRLQRQKHTLDNVLGSVRKGVTTRRQLANFCEHHAFV
SCVESQKVHEALKDLNWLNAMHAELNNFEPNRVWSLVERPKDCKNVIGTKWIFKNKQDALGQVTRNKARLVAQGFSQVVG
IDYGETFAPVARLESTRILLAYALHHNITLQQMDVKSAFLNGPLNELVYVKQPPGFEDPQFPNHVYKLDNALYGLKQAPR
AWYEHLKELLVDRGFEIGVIDPTLFTKMVGGDLFICQLYVDDIIFGSNNGVSNDQFAKLMTEKLEMSMMGKLEFFLGFEI
KQLxGGIFINQAKYSQDMLKRFKMLDVKSAKTPMPTSSFLDLDPNDKDVDQKVYRSMIGSLLYLCASRPDIMLSVGICAR
YQSAPKEIHLVAVKRIFRYWVHTPNFGLWYPIGSSFKLMGYSDSDWAGDKVDRKLTSGTCQFLGRSLVSWSSKKQNCVSL
STMESEYVAAASCCAQLLWMRQTLLDYGITCESVPLLCDNESAIKIAHNPVQHSKTKHIEIRHHFIREHVARGDIDLSYV
ATGMQLADIFMKPLDEARFRELRHELNILDSSVVV
>Copia-5_Cfl#LTR/Copia 99-4021 via tfasty with Copia9-NVi, 67.0% SW:2810, 1 frameshift and 2 stopcodons. [Camponotus floridanus]
MAETPRVIVAKLNNDNYESWKYKVELLLIREGLWDVVHKEQPAQLDAAWLNRDAQARAMIGLLVEDNQLTHIRSKITAAE
TWKALRDYHQKASLSSKVILLKNLCGMKLAENGNIEEHIINMSVIKDKLEAIGENIKEELFIAMLLGSLPDSYNSLINAL
ESRPEKDLTISLVKGKLIDEYRRRSSNTAAMNEAQDKVLKVRDNRKYTRPEQDPMECFFCKKKGHMKRDCKKYKAWKEKT
EKVNKATTDKDNICFNIDNKDFSKESWYIDSGATSHMTNSKEFFNVSFTTIEDRVTVANGKEVKVMGIGSGRISCSNGNI
NKIITLKNVLYIPGLHSNLLSVKKITENGFTIEFKETTCNILKDQEIIVTAESAGNLYKLNVKHEALSSTKMHSSKCIHS
WHRKLGHRDPDAIRKLAREDMAYGITIQECGIKEVCEDCIQGKLSKKPFPKISNRQTKDILDIIHSDVCGPMQTTTPGGK
RYVLTMIDDHSSYTEVFLLAHKSEVFRYVKEYIGAVKNKFNRKPKVLRSDRGKEYVNKQLTDYLKEEGIKIELTAPYSPQ
QNGKAERKNRYLMEMARCMIIDSGLAKKYWGEAVHYSxLPKxGEAVTTANYLQNRLPTKCNNGTPYEKWFSQKPNLKNLH
VFGCEAYVKIPDELRRKLDSKARKLHFVGYSDQSKAFRLLDKKTDKITISREVIFLDEKQNQEEPRKEKKSEESEAEIEI
SEKKEDTSAEEKTQIEKDKKKTKQSTEELDITATPRRASEWTNKGVPPLRFNEFAGMTMHEDDEPKTIEEALTGKDRINW
RKALDEEYESLIANKTWKLMKPPENVKIIGCKWVFKLKKDEEGRTVRYKARLVALGYSQEYGIDHHEVFAPVVKQTTLRI
LLTIANRDKLQVLHYDIKNAFLNADLAETIYMQQPKGYTVKGKEQYALKLNKSLYGLKQSANLWNKCISDKLIKLGYTQG
KTDTCLYIKHDKDIKNYVTIYVDDIIISSNSTEEIIKLERILSNSYNLTKLGNIKEYSGIQIQTDKEVYYLHQRKHICNI
LKTFGLKDAKGSKIPLSVGYENLEDHKILQNNKNFQSLIGSLLYIATCTRPDIKAAVAILSRKLNNPTETDWIEAKRVAR
YLKYTIDYKLKLGNDRLKEEGLIGYADANWAGSREDRKSNSGYLFKYCGSTISWACRRQSCVALSSAEAEYIALSDGCQE
MLWLKKLLKDFQEDVKLPVKIYEDNQSCIKLARNQNFSKRLKHVDTKYHFVRDLNEGNIILLEYCASEEMLADMLTKAIQ
HIRLRELSKEAGLETFHGNKDDVIEEEC
>Copia-4_TC#LTR/Copia 17-4625 via tfasty with Copia-77_PT, 72.5% SW:3494, 2 frameshifts and 7 stopcodons. [Theobroma cacao]
MAENEANQVNVALVSSANASHNIAIDTKSPYFLHSSYHPGLTFVTHPLNENGENYFTxRRSFLNALxSKNKAGFVDGTII
KPDVNSQDYDLWVQCNAIVASNAMPLRFQCNAIALSWLTNALAKEIQSSTAHADTTHEVWANLxERFTQGIAPRIYELRR
AMALLQQEKSSISSYYGKLKTVWGELQASNPIPVCTCGCTCGAAQKMEDMREQEKVFDFLMGLDDTFSTVRSQILSVDPL
PSLGKAYSIAAQEEKQRQVVANRVPTIEGAAFLAGQVIGDQAMTSRHAVANNKRSQNRRLKEKTEPVRCTHCGKPKHTKE
QCFEIIGYPENWNRRPSDRSRSRGGRRVDQSSSSSALAATIGDSNSSIPTSGIKAQQQQILQVLAALGVGNTPNLQSASQ
AANITNQNVGKKERHNDPWVIDSGATDHITKDLGLLTNVKHKPNFPPIQIPNGEMVPVQALGHVNLNKQLVLDQVLGIPN
FNFNLLSVSKLTKDLNCVLTFWPTFCVIQDLPSRRPIGVGRVRDGLYYLEPIREGKALMASNMRHANMWHQRLGHLPMNR
LSFIGDLSINVKENKFCDACCRARQHRLPFFASTYESSRIFELIHCDIWGDYKTPSLSGAFYFLTIVDDYSRATWVYLMK
YKSETRDYLLHFYQWVRTQFNTQVKIVRSDNGMEFKHNDLLTYYNENGIERQTSCTNTPQQNGRVERKHRHLLEVARALR
FQAHLPIKFWGECVLTASYLINRMPLSVLKNKTPYEILLGISPTYQHLRTFGCLCYGLITNKSRDKFAPRSKPGIFLGYP
HGQKGYRIFDIEDKKIYTSRDVQFFENIFPSALTKGSNGIDGSPTTHIPASWTSTDPNIQVHTSDESFMCSYLNPSDKLV
QxSSHTETVGAMLKLSHASHMIWLDLANxMIxARWTRLGNVIHxAMKSVPLIPNGSLGQQIEQPSTTTGTTVIADTSVMT
GKRARQIPRKLANYDFVLPPSLTSSSSTHTPTPKANSTVYPLSQFISYSRFSRDHNAFLAAILSTDEPTNFHQAIKHAHW
RDAMAKEISALEENKTWVLSKLPPGKRAIDSKWVYKIKYNPDGSVERYKARLVAKGYTQIERVDFHETFASVAKLVTVRS
LLAVASVQNWELHQLDVNNAFLHGDLNEEVYMKIPQGFTRKGEQRVCKLQKSLYGLKQASRNWYKKFTTTLLAIGFYQSD
ADHLLFLFHRGPAFIAILIYVDDVIITGNDSDHIVKLKRYLDKKFCIKDLGKLKYFLGIEVARSPSGIVLSQHKYVLDIL
SECGLMGSKPSSFPIDQQHKLASDTGPFCSNPELYRRLVGRLFYLTITRPAISYVVHLLSQFMHNPRQPHLNAVFRVLRY
LKNAPGQGLLLPSNNSLSLRAYCDADWAGCPTTRRSTTGYIIFLGSSPISWRSKKQTVVSRSFAEAKYRAMATISSEIIW
LIRLLRDLQVPCSNPVPLFCDNQAAIHIAANPVFHERTKHIEIDCHFVRQHIQSQTLIPRPITSKFQLADIFTKALGRDR
FHELLSKLGVSTLHTPT
>Copia-5_CPu#LTR/Copia 429-6128 via tfasty with SHACOP15_MT, 52.5% SW:1090, 1 stopcodon. [Coniophora puteana]
MSTSGNNQLSATAQVIGVYNGVDYTGWAIRMKNNIKSSGNGRALRETRAHLHANTPMNTATDRAERGKWEDANDTAMGKI
LECVSNDQLRHLAGVDEASVALDTLETHAAARGISTAINELKSALNTQIPGDSDPNPAITKIVASLDRYIGLGGTVPASL
AGAILFSKIPPGYEAAKHAINAATTGLSTLTSATVITRLQSDWELRSASQKKKKAPQVKEEQANKASSGTKTYNGQTSSS
GDGKKARKGKKERKGQQGQQQQQGAANAASTTSTPAAASAPAVQQQAPAQSTPAANYTSTAAFQTPPQYHFAHVANGPST
GPAPALVSTEPAHDPRKRSHQPATTYQGRGTDPAPAWGPASALKRQRDEGLKPTYERTRADLPSMAGETPALISRISMGS
LPTPPLSARYEPIEEPSRKPQVFQPRAMTDPATWLGAPKRTKFSDWKKQKLGDRLAAGGSYVSDARTGHNGWLDADAYAQ
YQRDSEDIRQTMAATPVRIDEFGQEEEDNYEEFAGMSLHEPSEDGRYTEKAVSLDEGVWCATGFSTAPGYSLGDKPFTGE
PYVVGSYNSHELVNRQCVHSSNQMCEICSEVSLVVRSPEREKALHDKVHERYPIGWVLDSGASTHFTPHLSDFSEFEDLP
EPERFTVSTSSGSTQCTGKGTVILRHEDTRGKPSTTRIYPVFYLPGGTIRMLSTGQFCREGNLLRGDKDKLVVLTSKSAE
VVHATVCPGGNLYWVHSSLDLHQAHSAGVIGMTKPDFKIWHQRLGHCSDEVLRRGRKTVEGLPTNLNFPAPNLRQPCEGC
TLAKMTNRPFPRDESRVTDFLGLVHADLKEFSVKSLIGKKRYALIMVDDCTGYCWVSLLRQKSEARQAVATWLAFTLNQY
HRSLRMWKSDAGGEFKSQEFTEMLQSRGIKILTSTPYAHAQNGRAERMIRTITEKAEAMRHNAYLPPFVWNLAIEHAAHV
YNRTPMKRLKWKSPYEIVEGEKPRVDYLRVFGCLGYVYLNPEERANKLVPRSHACIHVGVSDSGNGYKFLTGDWKLKITT
NVVFDEMTFPKRHMFWHRNTQRFTRLPEVDALAPPRSPINNDFPPLSSEDARPAPPAAQSPLQWDDGELPADGPRNLSPP
RMPRSEGSDDWRKAHQPKVEDDDDEFEGLAKEFAELEDEWDDMYQGLPADDPPREEHQDLLPEPGEQPAPRAQRPQRQPT
VAPQAPIPETVRTSGRKRKPNMLPDNSIPGRNPLEQFRNLGRSLEGTVRKNLVGHPAGHEDDQPRDGCTWNPPSKWRRTD
QFLDSDRLTPVDPDRTMDEVEQEQERAKNLWQRYRTPAPADNNDGPTGLMTHVQGEQTLPPAFMQNAAAHIAHARETAAE
FVDKMILMAYSAATELGPDLASVREWKYEDIITLPTEESEAWMQACRDEIEALVQRGVFTEVELPSGRRAVKCRWVFDLK
TDGRRKARLVAKGFSQREGIDYSEVFSPVVRFETVRMTLALAALEGWYVSGLDVRNAYLYGDLDEEIYMEQPRGFRTSTN
LRMVWRLHKALYGLKQAGRQWWQALRQSLKELGFEQIQSDAGVYKFKQSKTGAVIAVIYVDDALFFGPDREVLTRVKAAF
MKRWECRDLGETKEFLRMRLSRVNMSVIRLDQTAYLQKVLARFKYLDAHPAPTPLPTGYTATKNLDPVDPSLRQEFQELI
GSLIYLMIGTRPDIAFAVSHLSxHAANPSKDHLNRAKYILRYLVGTQDYYIEYSGALRKGFVAFADADWAGDETAKSTTG
HVFMLANGPILWSAYLQKSVSLLTVEAEYMSISDCARQAKWFAQMMGELGVLQIGAMPIVGDNQGALHNIQNPVTEKRSK
HINIRYHFVRELHELGVITLYWIPGTENPADMMTKNLPLVKHKQYCLDISLFFGKPDQSV
>Copia-5_LBS#LTR/Copia 333-5585  [Laccaria bicolor]
MSTNKSTSLSVNDIPHFNGRNFQGWSDKMIGIFMIAKVYDVVKGDLVKPANSEKPPAIRPPAIITDDTDVITTTKLNALW
TQFQVQMNQSNYLLGIWERKNSAWTDANSQAMGIFNRALDIGIWDQVKAKNAKETWDWLKEKYAKSSHLEIMEHFRFMKN
QNIDLSDPNPQLAKFMHHYQALPLNMISSAMAAIILLSNLPLSNNPNVSNVYQNLLESSFKDDIATSLVLEDVMTQIRDV
WQARFLTLASHDQPRKGTTYDKGKAPANQPSQQKQQNQVQRNTAIKGKGPTPQYSQQQSAESGSSQQKKKRPFRRGGKGK
SANNHNHVAGASDTFNSDFILASSAIHIADTPALPAPTAHTVASFSAAGPSIRHERTTGPWKNPGRFTPPYPHVQRSRDL
MSRLGVKPTIQTSKEFEGIASLEEVTDGSFGAPTYQWGAYKLTDPIRAPTPEMAPLLERMQVDELSQEEGDTVSLGDEEE
PIPQGSDLFGDNEDVGASIPQGMKLDLGSGESDYGDDGPETLCGPIESAGAAGPSKHVWNMGIPQTKRWYDDDEAYDGPT
ENESVPFCSHKGDSLTDPSTASISVDIGRSLDKYLAYVNENHCKFVLDCSDCKGKNSRSKHIEWVVDSGASVHFSEDESD
FSELNLFSEKERPFAQTANGAAAIHGTGTVFVKTWIDNPKSPEKKSTTISRLHPVFYMPGIGIRLLSMGLLLKGNMHVKG
DERTLRFIDAQSGKVKIVAVTRIFTDTIYWINSEILTGSELIAHKSMHLDDFDLWHRRLGHPGQQVFEKFESSTRNFPKS
IEIPKNPPVCEGCAKGKMHSRSFPDNSARATRPFQRIHSDLKEFAVKSYHHHKYYISFLDDNSSHSWITLLKKKSDSKVA
TQQFIAMVKNQYKAIISEWMSDNGGEYVDQNYVKLLKDEGIMIQRSVPAQPQMNGRAERFNRTIDEKAESMRHQACLSDN
WWEFCVLHANYLYNRTPMRRLDWKTPKGYLEKEDPDISHLRILGCGAYVFIHKDLRANKLSPKSEMMTFLGYRDGRESNL
MFMRPPNNVIFTAATALFDERLFPRCAKKSKVPPVTQIQEPGEPEIVIETESVPDGNSGAPFAPPHDIFIPPRDNESTHD
DVEPHSPPGSPPPQPRNAPGGAQRGNEPPRRSERERKGTRKDGNVYPPGTSTDTDRRRKLPDANSATSVPNSGQSSKPAV
GDPGHAKLATEGGALWEYLLSKAIPHGELPDPMNVRAWTSKDIGKLPAEDQREWQNAQFEELEALKKRKVYELADLPPGR
KAIKNRWVFDLKSDGRKKARLVAKGCSQVEGLDFDEIFSPVVRFESVRTILALAALEKWKVEGLDVKSAFLYGELDEELY
MEQPQGFKIPGKEHKVLRLLKAIYGLKQAARAWWHELDKSLKELGFTRLYADAGIFVAKHADGTMVIILAYVDDIIVTGP
NTTLVASKKKLFMDKWECRDLGECKEFLRMRIDYRDGKTYLDQVPYLEKILKRFGMADAKAAQTPLPTGYKPEPFDGTAT
AALRSQYQSVIGSLLYLMLGTRPDLAFAVTQMAKFAQNPSEEHLNQTRHIMRYLVGTRKYALVYDGRSDGGLYAYCDSSY
GDDRSDADRRRRSTQGYHFTLANACVKWHSKTQTLISTSSTMAEYIALSDCARDCAWYKILFSELGKPMPYVPIYGDSHG
AIFNAQNPVTQKGIKHIEIRYHYIREQIEKGAVKVFAVPTSENVADMFTKNLGPTLFLKHRKELGIEFYSL
>Copia-5_DPu#LTR/Copia 442-4657 via tfasty with TTO1_NT, 1 frameshift. [Daphnia pulex]
MSNQASMYNHIHMLTKNQTYLLQIRDDPDNPQRITNVAAIDAWILRDVTSRNYIFATLTKPMKDSLYSCETAAIMWTRLD
TQYRLRAAENLHLLWQSFYDFTHHPGILNIITHCLNIPLIVTFIYTDDYMTTHIRKLSSIADKLRELGQPLDEMQLVTKA
LATLPEQFRIVRSVWANVPLNERTIDNLLQHLRSEENVLRSYERPDGSNQAFAAYGQTRGRGSRGNRRGGRSLHGVNRQP
PRPDVRCGYCFIPYHETKDCRKKKRAEREEQANKDQALLSSTSVNPKSVLAFFAADSGATQHMSDQKTLFEDFIPIQPGS
WSIAGIGDTHLQVLGKGHIRATINVNGETSTRLIEDVLYVPGLGTNLFSIGAATSSGLETRFSEDQVFFYRGNQLVLTGR
RTGNTLYHLDLQPQTTRNKTTCHIDLAQQAGLQASLIVWHQRLGHMSHQTILKMVSQDLISGLHLTNEKIPKTLCTACEL
GKFHRQPLKSGRTRATRVGELIHSDVEGPMPSPSVGNARYYVLFTDDFSGWRVIYFMKCKSEVPALFRLFFASLLNETGN
TVRTLRSDNGGEYTGTEFNKYLAEKGIRHETSAAYTPAQNGVAERGNRTLLDGARSMLLASNLPPTLWAEAVGYLVYIRN
RVLSSTIEVTPFETWSGRKPDISNIRIFGSRAFVRCPNVKKLDARCLEGAFVGVSNTQKASRIYVTSPSPRIIVSYDVKV
DETVMYSTTKKQNGPQWTEPTDRTEPIICDPTDNAVEADQKLTTTAQPSNSDPVNEAIQVDQVFPEEMIHLEAMPEEVPH
RDEPTHDIIQEEAVQNPIILENDNNVADIPNTDDRNETTSIRRSSRLPHYSERYLAYRKSLGRQAVCFAMPASTEDTNAV
PVEPSSYTEATTCPDADKWIPAIFDEYESLIQNNTWTLCPLPPDRSAIEGKWVFAFKPGYQQVAPRYKARFVAKGYSQVY
GLDYIDTFSPVVKHYSLRTVLAIAAAKDLEMIQLDIKTAFLNGDLQEEIYMKQPEGFVIPGKETQVCKLLKSLYGLKQAS
RAWNQKFHAFIVKFGLTQSKADPCVYFRHQREGEVEEFTVLIIYIDDGIIFSSRKQTLTDILKHLETAFEIRSLPAHRFV
GVDITRDRSKLMMYISQPDYITKIAGRFNMTTCTPLAVPADPCCRLSPDMSPQNEEEEAEMKTIPFREALRSLMHIMVMT
RPDIAYAVGQVAQYAQKPGKQHWRAVKRILAYLTKTKNFGLCFGRSSDQLIGFCDADYAGDLQTRRSTSGFLFLYLGGPV
SWASRRQPCVALSTTEAEFVAAAEATKEAVWFQQLLSELGIDGRSTTLYCDNQSAIALVNNPTFHQRTKHIDVRLFYIRE
LQEKKTINVVYINTEQQLADILTKPLAVPRFEKLRDALGVVPIKI
>Copia-4_ST#LTR/Copia 52-4575 via tfasty with Copia-57_ST, 86.2% SW:5365, 1 stopcodon. [Solanum tuberosum]
MAIVVDNELPEKLGHNHPLYLSSSDTSGVVLISIQLTGSENYFVWSRSMKIAILGRNKLGLIDEKCRKEGFGPNLVDLWE
QCNAIVLSWIMNCVSKELLSGIVYSSDACDVWRDLNERFDKADGSRIFQLHREIVTANQGTSTISEYFTRLLLLWAEFDC
LAPFPGCACEKSRDFMEFMPRQKLMQFLMGLNESYEQARGQILMLIPLPSVNQAYSMMIARESQRSMAHAIGPMTHMEVA
ALIAGRNASSHKFKKDWNVQCDYCKKMGHARGNCYKLIGYPPDFKFRKRVGNPNTPDPRGGDQRSQAHTGKTDDGAHSET
GQNRSACVHNSRNVTSQGKSMMLSDSRSEGENSGRYSDDWNKGTGSPSYSHNQYNQMMQHMDNQHHYNQFRRLVDKDTVG
ESSNMNCLSDSANMGGEFFTSHMTAVASGTPSAGNASVPSLNACRKEWIIDTGASNHMISHKEMLNTANKGIAIKDKKVY
LPNGDKVDVSHIGSCEIMDGKTLKNVLYIPDFRFNLLSVSRLTKELHCSVSFFPNFCIFQDLSSGKVLEIGEENDGLYLL
NHKGSTDNNEHPVRGLLATKNKADILLWHRRLGHASVGAMKRLFNFNHDECKQVINICDICPLAKQSRLPFPDSITRSVT
VFDLLHLDVWGPFHVPTFDGNKLFLTIVDDYSRMTWIFLLKLKNDVVVVLRDFIKLVSTQFGKTVKKMRSDNGTEFVNSE
CDNLFKSYGIIHQKSCVYTPQQNGVVERKHRYILELARAIRFQGSIPLKFWGHCVLGAVYMMNRLPSIALQGKTPFEMFH
GCKGTCDHFRTMGCLCYAKTLPTGDKFTARAMPAVHMGYSEVSKGYVLYNLETNCFFISRDVVFNEDSFPFKTQSLSHPM
FLDIFPGIDEDAALPAPVDQPIQEPQVPINHEIPVVVNTPPDPIPSSGDIRHSTRPKKHPSWMNDFVVNATASTLYPLSQ
HLSYAHLSKPYQSYIKAFSCITEPQSYHEACKDPNWIKAMQEEIQALEDNHTWKLVALPHGKVLIGCRWVYKVKFKANGD
IERYKARLVAKGYNQKAGLDYQDTFSPVVKIVTVRSVLSIAATSGWHIHQLDVYNAFLQGDLFDEVYMTLPEGFSSxGEK
PGLVCRLVKSLYGLKQASRQWNVKLTDALIHSGFIQSSLDHSLFTKRHNEHIVVVLVYVDDMLVAGNDLRLIEKTKEELH
AKYKIKDLGQLRFFLGIEFSRSSNGILMNQRKYALELIEELGLTGAKPSWTPLDPNMKLTTTEVDKAWGVTGDHTLTDIG
SYQRLIGRLLYLTMTRPDISFAVQTLSQFLQNPKKSHMEAAIKVVRYVKREPAVGILMSSKKENKLVAYCDADWAACPNT
RRSVTSFVIKHGDSLISWRSKKQATISRSSAESEYRSMASTVSELVWLAALFKELGEKLKMPIDLFCDSKAALQIAANPV
YHERTKYIEIDCHFIREKIQKGLIRPLYLTTQEQQADIMTKGLFRAQHEYLVSKLGILNVFVPASLRG
>Copia-4_AA#LTR/Copia 208-4137 via tfasty with Copia-29_CQ, 82.7% SW:4311, 2 frameshifts. [Aedes aegypti]
MEDDRAPRVYLFAGKNYSTWSFRMQAYLEELGLLHCIEKPLEEEDFYPENPADTAAVEQAKEEKRKKRKQEDAKCKSVLI
HKIADSQLEYVRGKTSPKAIWSVLQQTFEQKGVSGVFFLLKQLTGMKYCDSRSMEEHILSFEKIVRELESAGIKFDEPVV
VFFLLQSMPKSYEQLITVLETLPVQQCSMEFVKSRLLSEDVKRQFSGSAKSLDPGTAFVGKGRKFPFKCHACGKPGHRRV
DCPENKYSERASDDRKFDRKQMKKKNKSGAHSAETEHDDIAFIVSVGDALHSSGSEFRWVLDSGASEHMVNDRSCLVNVR
KLEVPTVINVAKSGVSLVSRVVGDVKMSATVNGKKLSCTVYDVLFVPGLYTNLFSVKRVAERGMEVIFGKDSARIVRNGK
VVCTANRNGRLYELNVNVVKESTAMIGETESQLSLWHRRFGHIGKSGLLKMVRNDMVEGIEGSVSAATNAKVCEPCMMGK
QAKLPFEECVKARSSRPLELVHTDVCGPFKPESWNGKKIFVTFIDDFTHFTAVYVLKAKSDVVDAFKKYAAMATSHFERK
IARLRSDNGSEYMNEELITYCNESGIIMEPSVPYTPQQNGVAERMNRTIIERARAMLDESGINRMMWSEAVQAAVHVINR
SPTNALTVTKTPYEMWYGRKPDVSRLRVFGSKVFCHAPKEKRSKLDVKSRVCYLIGYGCNGYRVWEPNQRKVIVCRDVVI
EELPVKRSKHPEVYTNDHLVSDRLQEPETSDLKSAEIVTGRKEVSVDEQDSSEEDGEDYEDAEDGNTPLRRSQRQRKLPE
RLADYEVCVAFALNAENYVEELPETVEELRKREDWPEWDAAIKDELKSLEKNRTWDLVDLPAGKRAISSKWVFKIKYTAN
GDVDRYKARLVAKGCSQRQGFDYQETYAPVVRISTVRTLLAVAVQKNLHVHQMDVRTAFLNGSLSETVYMRLPTGFERGK
KVCKLNKSLYGLKQAPRSWNERFNKFMVHLGFKRSEHDSCLYVRNKNGIVSYLILYVDDIILASSSLDELVKIKRSLTQE
FEMDDMKELNHFLGLKIERNMEEGTLIINQSQYIRALLKRFSMQDCKPVSTPLEVNLKLTTNESEPVTKHPYRELVGCLT
YLMLSSRPDISSAVNFLSRFQSGATDTHWTHLKRVLRYLQGTKDDSLVYRRNRNSEPLAGFADADWGSDVNDRKSTSGSL
FTEAEYVALSQAACDAVWLRNVLKDLGVDCCSPTTLFEDNQSCIHIASEPCDQKRLKHLDIRYHFIRECIQAGEIRVEYL
PTQKQVADMFTKSLPTRSFQIHRLTLGLRG
>Copia-3_PSH#LTR/Copia 503-4960 63.4% sim to Copia-1_CCi, SW:2513, [Punctularia strigosozonata]
MSSNTSTSTQKVTPLGENNYNTWMPEMRAYLAEQKVWFIVSGEDLRPSDDAGAVAWRDKAAAAAGAIYRALEPGQRVHVV
GIEMDPVKMWAKLAEVHLQKVSGARFNALDALLTVRKGADESLPSLIARVDSLHQELKALRPERYSIADLDDDLAAMSML
HSLGPEYAEFTSSLVRFNPSRSNVVQAFIREHNHRLPRAGAADNAAYRAQAAPSSSAAQDVLCDFCGYKGHSEATCHRRS
AARDAARKEIAERKSGRRTPRSQTAKAASKAQDAPGSPQTAGQAVHVELAGNASVSSSSEPLPAVLDVPSTDWTADTGAT
AHMTPHRHWFISYTPCNVPIRLADSKLIYVIGVGSVRFQPVVEGQESRLVEWTRVLHIPELRSNLLSVLYLTQHKSIRVV
ITRGLMAFVRGTTTLFTASVSDSNAAIVNGRTLPALEHAQPASTCALDLELWHRRFGHVNVDYVRRMLKEDSVSGLKLDS
DAAPDTICEPCISGKLHRPPVPLRASRRASEALGLVHMDVHGPIPVQTPEGYRYWVIFVDDAHRFWVVVLLRRKSDAFQA
FLRFKAFAERLTGCKISALRDDKGGEFISKEWDDLCTSEGIRREHSVRNEPHQNGVAERANRTLAEGATALLSESNLPPS
FWGLAVAAYVHVHNRTPSAALPKGATPYFGWNGIKPSVERLRVFGCVAYVNIQKDKRRGLSSHSEKCIFVGYAEDYKAWL
FYNPDTRKWIISNAAIFDERYFPGARSTASWDSAASDFLLRALPSLHGAPRSPPDAPAPVPGGDMAPPPLQDAQDIPEPG
GDLEPPHVPPVSPARVQTPPPSPRASSSPPTGSASPDASPSPVPRSAAPSPDPERSPTPPERPPTPPLALRRERRAPKPV
QPWWIVPSRSPAPQAYREPTPAIESSEDEDDTSSKDPLAAAEPEDAMLVLAGLDTVYAAPSSPDHLSFLQSLEAAFRTCA
LKAEARGNEPRSFCEAMKRPDSDLWYKAAMEEIEAHIANGTWELVQLPPGRKAIGSHWVFKVKRKADGSVERYKARLVAK
GFSQRPGVDFDETFAPTAKWAALRAILAICALEDWEADSVDISNAFLNGDPVEEVYMDQPDGFEQGKPGVVCRLRKSLYG
LKQAPRVWNQKLDTALQEMGFSRVRCDKSIYVWERDGVKVIVPVFVDDLTIVSKSKEAKDAVIEELSRRFKLRYLGPISL
LLGVHITRDRPNRTMTLDQHQYVLDILNTYGFSTCSPVKTPMDPNLRLSTSMAPSTPDDVAYMQDKPYVSAVGSLLYLAI
CTRPDISYAVGVLSRFTSNPGPAHWKAVKHLFRYLRGTLDLRIRYAPDDSGELFSSFCDADHGGNPDNGRSTSGYILKVG
TGAVSWSSKLQTVVALSTTEAEYVAACYAGREVIWLRNLLTELGFDVSSSSMLRIDNQSALSVAKHPEHHGRMKHLDLAF
YWLRDAVEAKKISVSYIPTAEMPADLLTKSLDRSKVEVCRGLMGLA
>Copia-4_BD#LTR/Copia 37-4348 via tfasty with CPSC4B, 3 frameshifts and 2 stopcodons. [Brachypodium distachyon]
MGKTPEEAMEEALAEAKAARAEADAAKTKLAVLKGEKAEGEKKTGELVPVAQALPTRSRGPIHYPQLTRTNYTLWVMQMR
VSMQSAGVWDAVHSDKVEFGQDCDALLAIYEGVPEDVMASLAGKDTAKAAWEAIKTVHVGHDRVRELNLQALRKAFEGLE
MGDDEQTDAFATRVNKMVSSIRALGDEVKELTVVQKVLQAAPAQLMHLVTVLEQCIVLKTLSVEDLIGRFKAYEERVKQR
FGDAIEGQHLMLTRKQWEKYAGKKTYGGESSGGGSKANTDRGQSHGKGEAQSSSKSESNPKKKFKCYNYGERGHFSKECK
EPKKKKKQEKAMVAEKVDDDEPALLLSETCIIACNSAEVKGRVYLNEEKIKPRLGTDARYDTDKWYLDTGASNHMTGCLE
MFTELDKSVAGMVKFGDGSLVEIMGRCIVLLQTCNAAHRGLTDVYYIPKLRSNIVSLGQLEEHGCEVVLEDGYLEIFDQQ
RRLLVSVPRGKNRSYLNLKLGQPVCLLTSVEERAWLWHARYGRLNFQALRSLSQKEMVNGLPLVKHLEKVCDGCLIGKQR
RTSFPRQAKFRAEKKLELVHADLCGPITPPTSAGNRYFLLMVDDSSRYMWIVLLKNKYQACVAFKKAVAELEKDLKLNAL
RTDRGGEFTSVEFTNYCEERGIKRYLTAPYSPQQNGVVERRNQTVVSMARSLLKSYEVPGVFWGEAVATAVYLLNRSPTK
SVSGRTPYEAWHDRKPDVHHLRTFGCVAHVKVIGPSGGKLIDRSEKMVFVDYERGSKAYRLxNPTKGKLVVSRDVIFNEG
EKWVWKEEAEQATINSEEFTVHFDPEDLVQNCDENQSKQSGFDGNLPQNFGPPNAAQASPVTHVAPVTPTTPMIAASAAG
ELSEPVHMRNLDELYDITTASWSPAYFDHMQDLELCMLGADEPINHIDALKHESWKHAMEEEMKSIHENETWKLDTLPAG
AKDIGFKWVFNLKKDAAGNVVKHKARLVAKGYVKRQEVDFDEVFAPVARMDTVRVLIAVAAHENWEVHHLDVKSAFLNGE
LEEVVFVAQPPGFEDRSSENKVLRLKKALYGLRQAPRAWNVKLDQTLISLGFERSPLEHALYKQNNGNARLLVGVYVDDL
IVTGSDGNEVQKFKLxMKKLFSMSDLGLLTYYLGIEVKQSKKGITLCQSSYAKKILEKTGMTTCNVSHIPMEPRMKLSKN
CEGSYVDPTTYRSLIGSLRYLVNTRSDLSYSVGMVGRFMEKPNSQHLAAVKQILRYISGTLNLGCMYARGERRKLSLVGF
SDSDHAGDTDDRKSTTGMVFLLGNSPIAWMPQKQKVVALSSCEAEYIAAATTACQAVWLERLLAEMVERKLEKVMLFVDN
ISAISLSKNPVHHDRSKHIDTRFHFIRECVEQGKVRVEHVATGNELADLLTKPLGREKLQELRLKMGVISVENTGQD
>Copia-4_SL#LTR/Copia 34-4052 via tfasty with Copia-16_Mad, 83.1% SW:4310, 1 frameshift and 1 stopcodon. [Solanum lycopersicum]
MKHGNNSMVKLTSTNYSIWRPMMEDLLYCKDLFDPIDVDKTKKDDQPTKPEKMTEKEWEKLKRKTLGTIRQWIDISIFNH
VSQETEPLELWRKLEGLYERKTAHNKASLIKRLVNLKLKPGKSVSEHLSDFQDIINKLTVMKIVLDDELQALFLLSSLPD
SWETLVVSISNSAPDGTLSLDVIKESMFNEELRRKEMGVDISQALVVENRGRSKSRGPKGRGKSKYRSKSKDGRKPTICH
YCSKPGHIQKFCYKLKRDQQNKKNDHHKEGDDKNTAATTSSSDDRVSLICATGxCCHVDSSDTEWLIDTGASYHCVPNKE
YFIDYRAGDFGSVKMGNQSSASIVGIGDIRVQTNVGCYLTLRDVRHIPDLRLNLLSANVLDEEGYKHTFGEGKWKLSKGS
LTVARGKLCCTLYKTHLKVCSGELNAIEEKTSPNLWHRRLGHVSEKGIKLLAGKSLIPADVTISLDPCDHCLAGKQHRVS
FLRTSTRKKVRLELVYSDVCGPIEVESLGGNKYFVTFIDDATRRTWVYMMKHKSEVFGIFKKFHAMVERETDCKLKRLRT
DNGGEYTSNEFKAYCSRYGIRHERTEPSTPQHNGVAERMNRTIIEKVRCMLRMSNLPKSFWGETAGTAVYLINRAPSVPL
EFDIPERVWFGKDPVSYSHLRVFGCKAFMHVPKEHRLKLDFKTSPCVFVGYGDEEFGYRLYDPAKQKVVRSRDVVFYEHE
MGFHLLGADKTYYSNFSHDVIDMPMPHVSTSDDQLTGDAPEDGHEIAHEHDHIEEVQPDVVVPQPDDEAVDVQHGESSNQ
GEKSSPQVEEPTLRKSTRVRQPSRLYPSSEYILITDEGEPESLQEVLSHSDKDHWLKAMQEEMDSLKKNETYDLVKPPKG
KKVLKNRWLFKNKKVDNKLVKWKARLVVKGCHQKKGIDFDEIFAPVVKMTSIRMILGLAACLNLELEQLDVKTAFLHGDL
HEEIYMEQPEGFEVKGKENFVCKLKKSLYGLKQAPRQWYHKFDSFMSSNEYKRTTADPCVYFRKFSEGNFIILCLYVDDM
LIVGQDVEKDLGPAKQILGMEIARDRKAGKLWLSQEKYIERVLERFNMKNAKQVNTPLAAHFKLSKRCCPTTEKEKESMS
HIPYFSAVGSLMYAMVCTRPDIAHAVGLVSRYLANPSKVHWEAVKWILRYLRGTSNLSLCFGGGEPILEGFTDADMAGDL
DNRKSTSGYLFKFAGGAISWQSKLQKCVALSTTEAEYIAAVEASKEMLWLKRFLQELGLKQSEYVVFCDSQSAMDLSKNS
MYHARTKHIDVRYHWLRVVIEEQLMKLKKIHTNKNGADMLTKVVPRSKLEFCSKLAGMSS
>Copia-4_CQ#LTR/Copia 108-3451 via tfasty with Copia3_XT, 1 frameshift. [Culex quinquefasciatus]
MGEKVETVRIRQFDGSNFSNWSYRVLRYLKTLGLRHCIEKAAEEEDFWNVPEGDAQAAAKEVLKARRMKEDDRCANALVE
LVADSHLEHVKGKESPKEIWDRLCAVFERKSTTNRYLLKKQLLTMKFDEKEPLQDHFLKFDKLVRELKGAGAKMDEEDTI
CHLMLTMPDSYDTVTTAMSVMSDQLTMDVVRRNYLDFEAKQKGKRAEQQTEDAAFAGHSKPKFKCFSCGGVGHKKNQCPK
RNDKKPEQRRKPEHKANLGSNPVSFVADVQEGRGDVCGPVTPVTWDGNAYFVSFTDDFTHLAVVYLLKTKDEVLEKFVEY
EAMATAYFGKRISRLRCDNGGEYTGHAMRRFCKSKGIQLETTVPYTPEQNGSSERLNRTVVEKVRAILAASRLPRNLWGE
AVYTAIYVLNRSPSVAVEGDVTPYEAWHGKKPDVSILRVFGSDCYAHVPKQRRKKLDSKTEKVKFMGYGPTGYRVWNGQK
IFTARDVVFNELVFTKEKEENSASEEWVVVEKSVVRQVEPVRQVEPARPVEPALPEDSEAESEYNTGEESAEEDEVVPVP
VLTPVGPSPQRDTEGREKRTIVPPAWHADFDMTVFALCAEEYVDEIPSSVGELRKRQDWPKWEQAIQEELTSLAKNDTWR
LVAPPDGARIVDNKWVFKVKKNGDGTVERYKARLVARGFTQRAGFDFSETYSPVAKMATLRILLALANHEGWHLHQMDVK
CAFLNGSLDEDIYMCQPLGFERRKDLVCKLNRSIYGLKQSSRNWNRRFDDYVTKLGFKRSQHDLCLYHWKADGVVTYMLI
YVDDILIAGNDLKAIRALKGKLSTEFEMKDMEEAKIFLGLRIDRERKAGSMTIDQKAYTLGILKRFGMENCKSSPVPMQP
RLKLERGDPKELTDKPYKELVGCLMYLTVTSRPDICPAVNYFASFQSSATEEHWVHLKRVLRNLQGTLDYKLVYQRTDSA
VGVEAFADADWGNDPTDRKSVSGFVLKLHGQTVNWSTRKQTSVALSSTEAELMSLCQASCEVMWMLNLLASIEYEVPHPV
TVYEDNQPCISVTADPRKLKRMKHIDVQYRFVKELIDNGKLRLEYLSTEEQVADLMTKGLAAPRFKKLREMLGIA
>Copia-5_PIT#LTR/Copia 57-4116 via tfasty with Copia-12_PR, 85.1% SW:4397, 1 frameshift and 6 stopcodons. [Phytophthora infestans]
MTSKRAKVLLGSGNYFHWEFNMRMTLARKGLLVHVQVVKKEAEVTEAWLINDAKTGIIAKSRAAHRRRYVCExLLMHADT
LREFYYRTLCTPRRMTRVSxVRxERRHVKHxRFDELVVGLQALGDPVDDSRQLVVLLSSLPTEYELIASIMENAKDITLI
EVKEKLLKEHERLQKKGTTEKAFPVSGSGGRFKGGRSNGRKGNNPRKSGGSFKGKCFKCNRVGHMKRDCPGGSNGAEDDA
VFAVGEERFAGWLIDSGATSHMTPYREDLFDYEGMVSDIEVAIADGKKLQVAGRGTVKLTGMDSKRIKMVEVLYIPGLDR
RLLSVGKLAERGLSVEFQRSSCVIWGKNSAVALGKKVGKAYVLDCEQEEARFVEYAGVDNQWELWHARMGHPSENGMAKT
QSATNGMPVVNRGIKTLCGGCMKGKHTVTPFPARSTSKTSRVLELVHTDVMGPTRTVSKGGARYVLTFVDDFSRFVVVYF
MKNKSEVTTKLAEFKAFYENQWGERIKCLRSDNGTEYGSKKVTQLCARNGIMHQRTVPYSSQQNGVAERMNRTIMEKARS
MLHYKGMSTTWWAEAVSTAAYLINRSVNTERSNMTPxEVGYKEKPRMEHLRVFGSHGYSHIDNAKRAKLDPKSFKCVFLG
YAENTKGYRVYDLEASKVTVARSVKLDEREVHGIYDTPCSGQGTVIHVTKDTDVAVTPNPVEGPVVDEPMEDVEEPVQDI
EMDNVEPDQNISVQQSLPLEGETSTGLELAEYHDPQPFHEDRLVFRPEVERSRRSREPVFLLEDGMELDEERKSEGSDGP
PAPKRPRIDEGGLLAEAVLAYAARINGVPDTPNSYAEAVASNEAAEWRKAMEAELLSHKKNGTWTLAPRKTVRPIGCRWV
FAKKRDENGRVIRYKARLVAKGFKQKYGVDFFETYSPLANMNSIRVVLAVCVADAYEMEQLDADTALLNSELKVRVYMEV
PFGIKNAQDHVCLLNKAIYGLKQAASAWNKTIHRVFMKNGFKSCGADQCVYVKHSKSGYIYICLYVDDMIIAAKTRDEIC
EVKEALKNAFKMKELGDAKFILGMEIDHDKSAGTLMIKQTRYIDDVTERFGQQNAKGTDNPCASNLKLSKEQSPGTKTEC
TEMQARPYRSLIGCLMFITTCTRPDIAYVVTQLSRFLENPGLPHWRAAIRVLRYLKTTRTLGIVYNRGSGEVTVEAFTDA
DGGSNIDDRRSVSGVMVMIGNGPVVFKSKFQRTVALSSAEAEYMALSLCTQEVLWTRAMLKDMGKDxEEATQIWEDNQGA
IALALNAGYHARTKHVDIKHHFTRESVANGTVKIDYVDTKHQLADMLTKGLGTKPLKYLRNASGIKEKVDTVQ
>Copia-8_CP#LTR/Copia 530-4711 via tfasty with Copia-74_GM, 75.3% SW:3625, 3 stopcodons. [Carica papaya]
MTEAKKVSVTSFDNPSLQISPVKLDGTNYLAWSRSYLLFIKSRGLQGYITGEVKKPDVGSLEYNRWDSESSLVMSxLINS
MQPHIVRTYLLLNTAEKIWNAASLTYSQMGNDAQIYELRNKVHGTKxGEMTISQYFSELNGLWQELDYYQDFQAECPADA
VKFQKLIEKERIYNFLAGLNAEYDQIRVQVLGKDPFPSLEQTYAYVQQEESRRNVMLHIAPVEKAGLVAQSDQSRDIWKC
DYCGKPRHTRETCWKLHGRPIRGRGGRRGGTTRAQANFVEARETPGSPSVGAFSTEEIQNLKRLLSQLNSPSTVGTSNMV
KSGIVHPISTPDNWIIDSGANRHMTGSSKEFLTYSSCTEGDNVRIADGSYTPVSGTGSINCTPTITLSSVLHVSSFSDNL
LSISVITRDLNCKIEFFPDHCIFQDLQTGKRIGTGRLQDGLYVLDRHLNLIGNQATIGNKEVNMEILQWHRRLGHPSFFV
LEKLYPKLFKRTSMESLFCDACELAKHKRSSYHLSNNRSTDPFMTIHSDVWGPTQNTSLSGHRWFVTFIDCCTRLTWIYL
LKAKSDVFSCFQSFHKMICTQFGAKVKILRTDNGTEYMDSGFRAYLESNGIIHQTSCAYTSEQNGVAERKNRHILEVARS
LMFTMNLPKSYWGDAVLSAVYLINRMPLRVLNFKSPMEVLxGKNSYIVPPKVFGCVCFVHARNVGKLEPRALKCVFVGYS
STQKGYKCYHPPSRKYFVTMDVTFRENESYFNSNPTPLQGESEKEEVIPNWVTIESHIQGENSIAESLNQEDNVGRLDKP
DLKRYSRREKSEKVIMQSVPGQESSSVPEDTGELSFSCDLSDKPIAIRKGTRTCTKHPISNFVSYDSLSPSYRAFVLSVS
SVSIPQDWREALGDPKWKEAMIEEMRALTKNETWELVSPPQGKKIVGCKWVFTVKHKADGSIERYKARLVAKGFTQTYGI
DYQETFAPVAKMNTIRILLSCAANLDWDLQQFDVKNAFLHGDLEEEVYMKIPPGFEDERTQGKVCQLKKALYGLKQSPRA
WFERFRRVMISFGYQQSNADHTLFIKHREGKVTLLIVYVDDIVVTGDDTKEMTRLKELLAQEFEIKDLEKLQYFLGIEVV
RSNKGIFISQRKYILNLLEETGMMGCKPAESPIESNHKLQAGSGTSVDLGRYQRLVGRLIYLSHTRPDIAYAVSLVSQYM
HDPRETHLHAVFRILRYLKSAPGKGLLFSKHGHLKIEAFTDADWAGSLDDRRSTTGYCTLVGGNLVTWKSKKQSVVARSS
AEAEYRAMAQGVCELLWLQKLMRELKLLKDEKLSLFCDNKAAINIAHNPVQHDRTKHIEIDRHFIKEKVVGGSLCLYHVS
SGDQVADIFTKGLCNKSLQNLICKLGMCDIFAPT
>Copia-7_PIT#LTR/Copia 25-4465 via tfasty with Copia-12_PR, 66.0% SW:2435, 2 frameshifts and 1 stopcodon. [Phytophthora infestans]
ILREDNYFLWEFNCRMTLASKDLLEHVQDLTGMKPADAAKRETAEWKAADFKALAVISKLLSPVYQTMIRECSSAKEAWK
TLRDFLSRTNLHNRVMLRKLLHEFQMAPGSDLLDHLLKFDDLCLRLSAVGDDLSDDEKLVILLGSLSSEYDAMVKIIEAH
SSVTLIDAKEMLRREFETLRKRDKQEEAFNAVSQDAHVGRQGNNGRSKWPQSGIPGRGRGYGGRGSGGRGSGGRGSGSGG
AGGRRAGGRGGDGSQRGRGGRGGSGFSGQCFECHQYGHRRSECPRPRQYDDRDEFVFAASTETSPAWILDSGARSHMTHD
RSDIDEFHALQEPTDIAVASGQRLRAVGTGVVRFTVGNGPVIKVTEVLYVPDLDRRLLSIPSLVAKGAAISFDGDGCSIR
FGDKVVAHVRKCRKLFVLSVTLIKPEDEAAEIAASALVPTEELWHDRLGHVSKKKLVLASRAASGIPSFTVSDVTSGEPC
VGCSCGKMTVNPFSRQSGSTVKTQGLLDIVHSDVMGPMKPLSKGGAQYVVTFVDDYSRFVHIYLMKAKSEVFSRFQEYKQ
LVETQTGCKIRCLRSDNGGEYVNKRFKELFVAYGIVHQTSTPHTPQQNGLAERMNRTLVEMARSMVHFRGLDRGWWGEAV
CTEAYIVNRVPNTARPQSTPLEVFTGVKPDLSHLRVFGAKGFVHVDRSRRSKWDAKAHRCIFLGYAPGSKAYRVWDCEDE
RLVTTRTVALDERPVDSYHTVIHTTQQAPMVIDDDANALQRQSSPPANTDGETDVDMEENNNATVDMEVDDAPDMSLQVQ
RGGHELSRRGGNERHAPMLPSHLSSSVVSTRQLAQPSSIESTAVVPTLSQAWRRPDTSLSDNLVFGPTRPRQARISNQFQ
PRLLEAGPPSASSRTPSRYPALPPSQARNSQDDAASLLLENGDNERGNGYSSDESTAEPDSKRPRIDDGYEIALSAVKSV
PNSFMQAMKSPDAAKWKEACRAEIRAHARNHTWDLVYRPPGARVIGHKWVFALKRDEHGNITRYKARLVALGCFQTFGVD
YTSTYSPVASLSTVRIFLAVCCQLGFVDKQYDVETAFLNGNLEEVVYMVPPEGIRVQDGMVCRLRRSLYGLKQAAAVWHK
TIRQVFLAMEFKxCRSEPCLFVRVGSHGPVFVVLFVDDLLIGCAKAEEASSIAANLITHFRLKSLGDAKYILGMELHYDL
KKGELFVGQSHYILRMLERFGQASAYPARNPSVVGQDLRASDEHPCLDSKTPYRELVGSLLYVANATRPDICIAVSILSQ
HLENPCEMHWRAAVQVLRYLKGTSYTGFKYMRAIEFKMVAFSDADWGSDFATRRSTSGVLVQICGGPVLFKAKKQATVAL
SSAGAEYMAVAVTVKEVLWARQLLTEMTVKIHSATTVLVDNKAAISMATNSGYTPRAKRIDLRVHFVRDHVQKQTIKFEH
VPSKLELADYMTKPLPTPQFIALVRSSGVVNNQVQEEQVEG
>Copia-8_ES#LTR/Copia 703-4754 via tfasty with Copia-14_AA, 62.2% SW:1120, 1 frameshift. [Ectocarpus siliculosus]
MVRLISKYSLALRATTFHAMRIRGKDSGRADGAGSHDRALNTVTHGGARAFRKQGGRGGRGGRGGRGRRRNGGQTTNGST
GGGSSNGNNGGATTHGDSAGNAQGGRGNGRGSQAFGGNGRGRGRDNGQNSKGLCRYCHNSKVHGWHNCPLRLSQEAEEAK
EQAAHVTQESTTQAWFTRIEGPSSELEDFAIVIGDDYMRVQEAPAAALPETRTADNPQVQKVPGAAQPEERAAGVVRVQD
VLAAVLCDECAAGDVPVQAALVAETHLQAEKASDGTEYVTYTNVFQVEPVNPSAVVDTTVYIDSAASSHMVCTESRLSKH
VRDPVDCAVRIIGSCGNSNATKKGTLKFGVRNDQNTVVPVAVEVLLVRNLGANILSVGALAEKGVMCDLLLTPPALRHGN
HVFPISTAVRRMYVVNVIIDDVNLDAAEVYRTKVDADMWHRRMGHCHPRALQQLADKATTGVKFNRNIEPGDCGVCAVGD
SKKSSHPPSNRTRATTRLEILSADVWGPHPVKSSGGCQSAVMFTDDFSRMRFGFLLKTKDGVAESLQELIQNEADPLGTC
IGKVHCDGGGEFKGRFQALCESMGIKLETSPPYVPQGNAIAERGFGTIIGTARKLLLGAPHLPGHLWGEAFQTAIYLKNR
TPTEVLGGKAPLEVWEGKPLGDMSHIHEWGSVAFKHEEARFRDTKLSARAKKMYHVGYNTKNRTYQLWEPAEPLMITNSA
EVSFREKETRDVVKPEYGYDPFSEMTPTTIYLPDTVDTNDEENKTAEEEEVSPTPSGPQMEDSNLRRSGRVSNAPDRMNL
HTTEEAYERIEHAMLTSDELGNIGTGRPGEVGYMPSDPANYNEAISGLDSKRWQASMSDEGQSLYEHDVFDWVDPPQGVQ
LIPSKFIYKWKYNQDGVPVRPKSRVMVQGFHEADTGKDKAAPVASMESVHLLIAVAAHHGLVLKQADIKTAFLHARIPED
AEPIYVIPPKGFECSSQQAKQVWKLKAWLYGLRLSPKGWNGTFHVYLLEIGVVQSTADPCLYILNAGEVILLVYVDDILF
TGTEKNQVSTIIEQLKGRFDTVDLGDARFILGMAVDRNVQAGTIRLTQEVYIKAVLAKFGMADSHPTKTPAEVGTINVVE
EEALSPEDTTMFRSATGLVLYLCRGSRPEIAHTVLVLTRSMAKPGAKAMAKLKRLLLFLKGTSSIGITYREDAEQGNLLT
AYVDSDFAGDGDDRRSTTSVVCFWHGGPVDWRSVKQTVVALSSVEAKYVAMSKACTMIIHYRHLQSTINQMQEEATRMFE
DSTGAISTSVNNKITPRTKHIDIKYHHVRSLIEDNVVAVEYLESDAQKADILTKSLGAVKFLRNRLLLLGV
>Copia-8_SI#LTR/Copia 58-4049 via tfasty with Copia2_Dmoj, 82.4% SW:3890, 1 frameshift. [Solenopsis invicta]
MEATHLKIEKLRDKDNWHQWRFVIRTLLEEDQDVLDVCEGRLVRPDANDQDSASKLKKFEKADKTARKLIVTTVERKPLD
LLLNCTTAKEMWTKLSSVYDLKSDENLSLVQKQFFELKWDCNESVAHNLSKLEQLATKMKSLGGEIPNSMILTRALSVLP
QKFNHFHSAWDSKSDTKKTFKNLTMRLMNEEVRLQKQENSEETTIALFSKSGSRNTSSKNNKSKQKEQSTKEKGVVCFSC
GQRGHVKKDCTGCYSCGLKGHIKKNCPKQSKKTGTREEANSAEQDGGTTRQAFLGSSDAAVNDFWVIDSGASDHMTRRRD
WFSFYEEYEEPLMVRVGNGDGIPAYGRGNIEIETLVNGQWISGVIQDVLYVPCLKRNLFSVKVAAKKGVNFSLTNHGSRF
ELTRDKKIIATGSDNGDLYKIDLRVLIPKECNIVSKFSKIDTVKSKVDTLQLWHERLCHQDKRHVKTLLKNMGINVLDVD
DFCDGCAYGKHHRLSFHNRVERATRVREIIHTDVCGPMQQESLGGKRYSLIFKDEFSGFRKIYFLREKSEVFEKLKMFCK
ELENQFGEIVREIHSDGGKEYINKNVNSFLSSKGIKHSVNVPYTPQQNGVAERDNRIIVEAARSMIYAKPDLPLSLWAEA
MNTAAYVINRTGPTKQSGRTPYELWFGKTANISNFKIFGTECFVHIPNAKRRKLDKKAEKGFVVGYIEDCKGYRVYIPSL
KDIVLSRDVLFKKEVVVPNQIEIKSGGEQNDTYDSGILYDKDLQKNEKEKETQCDCKTKPVQSSSNDNSNVRQLRDRNKI
KKPELYGSPVSFFTEMLPENYSEAINSNDKCNWEVAMHDEINSLLENETWMLVEKPETKKILKSRWVYTVKSNPDGSKRH
KARLVIKGCFQTEGIDYKETFSPVVRFDTVRTLLSVAAHDGLNLAQFDIKTAFLYGSLKEDIYMYQPEGFNNGTARVCKL
LKSLYGLKQAPRCWIEHFTGFLEFFGFSRSIADPCFYIYKSEIDKMLLAVYVDDGLLAATNKLLIERFFLELRKHFKITE
TNNVTSFLGVEIVKLPDGSIFINQGKFVRKMLEKFNMSNANIVSTPIETGWDLSSPCKLEKEIPYREAVGNLMYLQVISR
PDISFAVNIASRALENPSIAHWLLVKRIMRYLKGTADIGLLYCKTGGFEAYSDADFAGDKETRKSTSGILCKNANAAIVW
QSKRQQCISLSTTESEYVSAASAVKEIIWLKSLLTECGDCDNEGFCLFIDNMSAIRLIKNPEFHQRSKHIDVKFHFIRDM
YEKGVINVKHVSSDEQTADIFTKALAKPRFINLRCKLGLITKENINKSFFL
>Copia-8_Pru#LTR/Copia 85-4074  [Prunus persica]
MTSEVNFVQPAIPRFDGHYDHWSMLMENFLRSKEYWNLVETGYAETEAGAAVTEAQQKKLDELKLKDLKVKNYLFQAIDR
AILETILHKDTSKQIWDSMRKKYEGNARVKRSILQALRKEFETLEMKTGEKVCDYFSRVMSVANKMRVHGERMVDVTIVE
KILRSLTDKFNYIVCSIEESKDIDQLSIDELQSSLIVHEQKFHKHDGEEQALKVTHEDRSRERGRGRGSYRGRGRGRGQT
FDKSLVECYNCHKLGHFQYECPSWGKEANFAELDEKEEAVLLMSYVELHGAKREDIWFLDSGCSNHMSGDKAWFSDLNEN
FRHKVKLGDNSRISVMGKGSVRLQVNGLVHVVTEVFYVPELKNNLLSIGQLQERGLAILIQHGKCRIYHPERGLIIQSEM
SANRMFFLLAMSQPSKAACFHTTTQDMSQLWHRRYGHLSYKGLRTLQFKKMVHGLPQLAVPTTVCKDCMIGKQQRDPFPK
KSIWRASQKLQLIHADLCGPITPISNSNKRYTICFIDDFSRKTWAYYLCEKSEAFSMFKYFKSLVEKETGTYIKCLRTDR
GGEFTSQEFNQFCKENGIKRQLTAAYTPQQNGVAERKNRTIMNLVRCMLSEKKIPKSFWPEAVNWTVHVLNRSPTLIVKN
MTPEEAWSGIKPSVEHFRVFGCVSHVHIQDAKRTKLEDKSFSCVLLGVSEESKAYRLYDPVSKRIVVSRDVKFEEENSWD
WDKSYKELVAADLEWGDNEEDTVLNGVNEEDSEGESDTREVGPVSSNNVNEGSLSSSTEEGREERIRRRPVWMNDYESGE
GLSEEEDVTNLVFFASTDPVHFEDAIKHEKWREAMDSEMKSIEKNETWVLTDLPAGAKKIGVKWVYKTKLNENGELDKHK
ARLVAKGYAQQYGVDYTEVFAPVARMDTVRMIIALAAQRGWTVYQLDVKSAFLHGELNEDVFVEQPRGYEKKDNPNKVYK
LKKALYGLKQAPRAWFSRIEAYFVQEGFEKCHSEHTLFVKVSKEGKILIVSIYVDDLIFTGDDESMIEDFKNSMMNEFDM
SDLGRMRYFLGIEVLQRDDGIFICQKKYAMEVLRRFGMEESNSVLNPIVPGFKVYKDADGVKVDATFFKQVVGSLMYLTA
TRPDLMFVVSLISRYMGQPTELHLQAAKRALRYLRGTTDFGIFYRKGGSENLVAYADSDYAGDLEDRKSTSGYVFLMSSG
AVSWSSKKQPIVTLSTTEAEFVAAAYCASQVIWMRRILEKLGRSQHGSTIMFCDNSSTIKLSKNPVLHGRCKHIDVRFHF
LRDLTKEGVVELVYCGTQEQVADVMTKPLKLDAFQRFRCLLGVCQVPEVN
>Copia-7_DAn#LTR/Copia 121-4122  [Drosophila ananassae]
MSVSLQIEKLGDNNYDMWRMVMRSVLITSDLWDIVSGKLKRPTDSTDSAVWYNIDQKALASIILNIKPSQLMHIKSCRTS
SEAWLKLKEIYMPVGPVRKVQLYQKLLRLNMSQGGNVAEYVNSFVEITDKLAELDININDELKVIMMLTSLPNNFENFVV
AIETRDKLPSFENVKLKLLEEGARREERDERDRTNETVYSHVHAKNHEDQRKIDRRDKIQKNRKKNTDKGDDRDHARIPF
EGKCYNCKKYGHRASECRSKPKNERDKEQQSNNCLMHSQSGVVSQKFDTWCVDSGATSHMCCVKSMFKTLKSKKSIIMLA
DKKYIESPGIGTVTFKIKGIDIELRDVLYVPDLQMNFLSVCKAAEWENFITFGHNEAVVKNKHGKTMLTAVRDKNLYTFK
TKMQSNAVYMLNENAIKWHNRFGHLNFQSLQKLENDKQVTGMNIKNISVNINCDTCNKAKICAKPFPQKANRSTKELLEL
IHTDVCGPMNSKSLGGNRYFVTFIDDYSRKIHIYFMHTKNEVFNKFKSFKTYVECQTNKRIKCLQSDNGREYINRDFENY
LNECGIKRQLTIPYTPQQNGVAERANRTIIEMARSLITHAKIGEFLWAEAVQTAAYIRNRCPTRALDGCTPFEIWYKRKP
SVKHFRIFGSKVFALDKTVKNKLQARGKEYVFVGYSHTAKAYRLYDKDKRTIVERRDVQFVEGEFSNKQPENHNTNDFAT
NIIRFESKPAENEIAMTDEPDEPEDDVEEPDHYSISSSSSLDNTDDGERFVSASEPESDEEDVSEQGRRCPGRPKIVRNG
QPGRPRKEYQVLNNLNSFEDFETPKSVTQALDSEYKRDWQKSMQSEYDALIANKTWTLVDPPHGIKPIGSKWVFRIKRNR
EGEIERFKSRLVAKGCGQQFGVNYWETYSPVIRYETIRMLLAIAVEKQLFMHQIDVSNAYLNSKLDEDVYLTQPQNFVNK
NNPQKVLKLQKAIYGLKQSGRAWNDTLNEALKAIGFQRCKNEACLYTRKQQKEYSYIAVYVDDLIIICPSEDQIEEIKKL
ISLKFDMKDGGPLSYFLGMEIERDGKQGEIRLNQKKYILALLEKFGMENCRTASTPLDSGFQTQCPNESCKKVNIKTYQS
LIGSLMYLAVISRPDILHSISKLSQRNTDPHVEHESAAKHVLRYLSGTVDLSLHYCKSDGSVDGFTDADWANDKLDRKSY
SGYTFFMAGGVFSWASAKQSVVALSSTEAEYIAMATAAREAAYLQKLLTELEWPNIYPMTINCDNTSAQHIATNPVQHKR
TKHIDIKYHYIREKVKFNEISLKYVNTEMNVADLLTKNLCKQKHCEFVRQLGLY
>Copia-6_AG#LTR/Copia 79-4089 [Anopheles gambiae]
MNPNSTGSSSAAGSSISTSSLPGIERLIGRENWETWKFAVQTFLELEDLWCAVKPKKNDDGSYESVDTAKDRKARAKIIL
LLEPVNYVHVKEATTAKEVWSKLEKAFEDSGLTRRVGLLHKLIKTDLESCDSMSDYVNRIVSTAHQLNGIGFPISEEWVG
NLLLAGLTEQYRPMIMALENSGIVITGDIIKTKLLQEVPPTSVEPAFAARTKHVNAGKQTKKSNTAKGPKCRKCSKFGHI
AKDCYSTKGNDSFCVVLSTCGSKEYGKWYFDSGASVHMTNNSDFLMHAKTSSGTVVAANGENMQITAKGSCVLKPSCQKG
EIPVDDVQLIPNLSVNLLSVNQIVKKGYSVTFTNEGCEVVNRNGDIIATGSHDNDLFKLDERKEGEKTALTVSSTGSLEL
WHQRMGHLNINGVRSLANGIVTGVNIVGDTMADCKECPMGKHSRHPFSKIGSRAAEILELVHSDICGPMEVKSLGGSRYY
IVFVDDKSRRMWTYFLKSKSEAEVNKIFQDFHKMVERQSGRKLKVLRTDNGKEYVNTGFTNYLKKHGIVHQTSNAYTPEQ
NGMAERANRSIVERARCMLHMAKLSKSFWAEAVAAAVYLLNRSPTKGHNVTPQEAWSGKKPNLSHIRIFGTRAMKFIPKQ
YRKKWDAKSEECILTGFDEFTKGYRLYNIRSKKVTVSREVNFINEGVAVPIQEKSSRRHMILLEHEETVSLSPNATSQME
AVLSENEDEDSDSEYFTDANNETSEDTDGTTNEFDETVVDNDAAVNSEPLVIPTQSQILRRSSRTRKVPERYNDSIIPHG
SGLFSNVTSSKIMSSNSSEDPITHQDAMSRSDSERWKVAMQEEYQALIDNSTWRLTTLPEGRKAIKCKWVFKTKHDAAGK
VNRYKARLVIKGYSQRKGVDYNETYSPVVRHSSLRYLFALAARNNLLVDQMDAITAFLQGDLEEEIYMEQPPCFEQPGKQ
NMVCRLNKALYGLKQSSRVWNTKLDAALKQLGLEQSKYDPCLYFYNGNGNMLFVAIYVDDLMIFSNNEEMKNQLKTKLSS
MFRMKDLGPAKHCLGIRVNYLNDGIALDQEAYIETILSRFKMQDCKAVATPMNSSIKLTKEMSPQTEEEKEEMSAVPFQE
AVGCLMYLAQCTRPDILFAVNQLSRYNNNPGSRHWQAVKHLMRYLRGTASMKLKYYRKGNEQITGYSDADWAADTEDRKS
TSGYIFLMQGGAVSWCCKRQPTVALSTCEAEYMALSAAVQEASWWKGLLEQFGKKQSIQIFCDNQSTICIAKNGGYTPRT
KHIDIRHHYIRDALDRNVVNLHYINTEEQVADGLTKALQRIKQERNRRSMGITQQSA
>Copia-5_TMe#LTR/Copia 96-4236 via tfasty with Copia-12_TMe, 73.6% SW:3002, 1 frameshift and 4 stopcodons. [Tuber melanosporum]
MATTRAAAPTPSTAAPAYPNPYTSLSHSIEKLDGSMATGKSNYVAWKFRVLRILKEKGLARALEDNADDDDSMGEQTTRD
RINDQAFTIISLNIKNSQIPHIQAATSAKEAWESLAKVHQGIGSNGRMVLMQKLWSLHLKQGQDMSAHVNSFKELATQVA
NLSPDGVGIPDSDLVSMLSLSLLESYEPLIMAVQSRAENVTFDFLTGRLLQESTRRQAARSTTADHTSQPLSAFTAASGL
RPGGLRGRGNARWGGRGFGRGMRGGPSGIGRGRGSPGQGMVSGRCHYCNKEGHWKNECYKRKGDLQQGSGGGHLAFMGYS
KPVIGESDWIIDSGASRHLTARRELLEDYISMLPTSIMIGNGKDINAIGQRNITLQTTSGMISLSGVLYVPDIGSNLLSV
ASIVDQGFHVELTRAGFSVNKxNTERVIGRRQGNIYFVAGLQEIAFAGLSDQKDATTKEIWHIRIAHRSLNEQGGQWITK
SVIGFNLTDNEKQQARVSGICAEGKQARESLTGERVKSQELLHTIHSDVCGPMASTGFMGERYFATFIDEGSGRIAVSLL
TxKLEVFERFKxYKAKVERESGKRIKSIRCDGGGEYMGNNLRNYLAEQGITxCMTTPYTPEYNGIAERANRTIMDMVRCM
LFDSGMGKEFWEFAALTAVHIINRLPSTSHENKTPFEKWFGKPPSIAHLRVFGYVAYWHIPSQTRTKLEPKARRCRMIGY
KEESGSRVYRLYDTASKQVILSRDVLFDETTQGVTADSGPSTTTPTESEREDRNQKETPSEKEDEEAEGTLLPSIDPDEK
DAATPSYDKDTIIVRPLQPQEQTRQAEENTQRTTNESRRVLRKHPTREMFRPNGGQALIAWTEEPQSLEEAFGGEDRKEW
NAAWQSELESLRKNGTWVVEKAPPDRNIVGYRWLFRRKEDGRYKVRLVAKRYSQEPGIDFKETFAPVAKFTTLRVLLALV
AENDWELHSMNVKTAFLNGVLEEEIYMQCPEGISEATQNGMTCRLVKPIYGLWQSPRAWYQKIHSFFLSHDFIRSTQDYS
LYINYGRRVLVLVYVVDLVLAAAEVEDIGWIKGALTEAFEMTDLGELTNFLGLEIGRKRSQRLLTLHQRKYIDKILTSHR
FPSCLTPLDPHTRHLPHNKETEGTTVSLDLYQSAVGSLMYAILGTRPDLAYAVGLVSQFNHAPLVEHWVAVKRIFRYLVG
TRTLRLQYGSSNQSGGYSDADWASGHDRKSVGGFVFLLNGGAVSWASKKQSSIALSTTEAEYMAMTSASKEIIWLRVLLE
EVGALNHITQMATLYGDNQGALVLARNPEYHARTKHIDIQYRFVRELVQDEKVNLDYCPSPDMIADIMTKALPRPAHEKH
TTAMGIIDRTGKQYRTLREG
>Copia-6_Ano#LTR/Copia 119-4059 via tfasty with Copia-1_Ano, 68.3% SW:1981, 1 frameshift. [Anolis carolinensis]
MDPGVNLAAFPMARLNGNNYSIWKVRMESYLRREFLWECTENPVQQPATAEQQRAQERAKATLILGVDDDQLVHICSLPT
ANTIWVRLREVHASDSAATVAVLARRLYRKRLKRNESLKDHLQTLQSLFLQLEERDFKLTEANKCFIVLSSMDESFDGIL
NSLESLPQSQLNLQYICARLLADWERRRDRGLESANTAGRSQEKQPAGVTHEEETERVCVVKRCFNCGSPNHLKRSCPKQ
QGKQGKKVNQRRRGSSHVRIVKSQRSPANEDIFYVDSGCSQHIVNNKNLIQNPVDPECSNVTLADGKLYPVQGQGEVFVK
HLGRTLRNVFLVPEIDYNLLSVGKLDKEGYAVNFFGGKVRILKGNKLCGIGVLQGDLYVLTPRGNTNEVNVISKNAPLHQ
GCIHDLHRALGHPSFKVLYKMQDFSEGINLKDCKKFLDCNVCKKTKAQSAPISKKSLRNSEEAFQLVHADLIGPFQPSKG
GAIYVLCILDDYSNFAWSFLLKQKSGVFEIFKNWVAYVKRQFGAGVKAQQTDRRGEFTSHNLEHFLKQEGIKYRLTCAYQ
SAENGKIERFVRKIQTVKDSLLEDSGLPQNLWGEAMLTACYLINRLWCEPIQNTPYFMLYGKKPPLGHLRTFGTQAWVFV
PKAIRKKGQDKARRLTMVGYAQGAKAWRFLDKDGTIVISRSANFAHSQNWDKIHANHEVFLPISNEKTREQGKQSEQGSI
AKPTSASHQLSSKVTQPELVRTRHPKIEVSEPEEVDIRPEVNEQEDAMPSTSQDIGLRRSERTRKKPDRFKIQNVRVCLV
NHEPQTFEEIESLPQGEKEKWLEAINEELKSMERLNVYEPATLPEGSNPIDTRWVFKQKIDSDGKVRYKARLVARGFTQI
RDIDYTEVYSPTVSPSSVRLILSLAACLNLKTYHFDISTAYLNANLKENLYIIPPPGSKCRNTNTVFKLNRALYGLKQAG
LAWNDCLNDALTKMGFQRSRADPCVYIRNIQHDYQILFVYVDDLCFAAESQSEIDQFSEELGKHFKLRNLGPIQYFLGVQ
IMRTEQGFMLSQKGKILQILEKLNMKDCKGVQSPMILGFTNEVENSEPFEEKILYKSIIGQLLYISNYTRADIAFAVNFL
SRYASNPSISAWNGLKRVARYLKQTQDFCLVLSPDDSLSLEVYADSDFGNSADRKSTTGVLVKFSNTVIDWKSKKQGFVA
LISSEAEFGALSLAYTEICVIKQLLKDLQIPVEDPTKIYEDNQTCILMSNTSQSKTKKHVDIKYSCVRDAVKNGEIDLMY
CNTSLNLADILTKPLSVQKHEQVLNDLGIFECTM
>Copia-6_SMo#LTR/Copia 216-4264  [Selaginella moellendorffii]
MAATVPTNPPPNPPPISPPITNPTVPTADIVSVDANPPKFDGRNWRFWKTKFESYMDERGLWDITTGTETLPDTATVDET
AKYRKKDRRALGKFHAALEGREFHCIGRCKSAKEAWEAMKQTYQIPSTSHRIFLRKQLHALVMAEGDDLKDHLAGVRTIL
DDLKDVGANIEDEEEAELVLVTLPPSFDPLIRSLTTTGTPLTLNGVISSLQDDDLRRRATTGSEAVAFYSSLRKETVNKG
KQGASSSKKPKCSHCNKKGHDEAQCWVKNPSLKPVRNNAKKKVVHAFILSRAMAVAALSAECIYLDSAATDHMFNSDKYF
EAYVPTATEEYVIVGNAQQLAVKGIGTIKFTLPQGIVVKIHEVLYIPGLCANLFSVGQFAEDGYQFAITPRQFQLISTTG
AILTASRPGRRDLYRLTMLPDLAGRSLGLHAQKTTTSHSLELWHARLGHPSADRIKQLAREQMVEGLDLDPRAVLPFCQG
CQLGKSTRQPFPKTGASRATELMELVHTDVCGPMATTAVGGIQYFISFIDDYSRRTMIYPMARKSQSLHYFQTFKDMGET
QTGKMLKRLRSDGGGEFTSNAFNQLCEQGGIVRELTTRETPQQNGVAERKNRTLVESARAMLLSSGLPRSFWFHAVLTAN
YLQNRLPTSALADITPEEAWSGKKPTVTHLRIFGCEAWAHIPDGMRKKLDPKSQKAVFVGYSLDHKAYRLWNPITKQEIL
SRDVVFNENSFLPSSQGSTSRPTLTEENDVEAEQDQLTVGTITVPLQTVPTQQPMPASTPTPPTPPPPPDPLRRSIRTRR
PTERLIETMVSSRAAGTPTVPRTYGEAMASQEASYWRVAMEAEIASQQKNETHVLVPTVPSNRQIIKSMWVYALKLNPDG
SVRYKARLVAKGCSQVPGLDYNDTFAPVVKHSTLRSLINFAAVGDFDLEQMDVTTAFLYGALEEEIYMAQPEGFLAAGKE
DHLWLLKKAVYGLKQAPRSWYKRFDDFILSVGFSRSEADPNLYIRVEGESFVIIALYVDDTLVIHNHRLMFLQVKRDLCS
QFEMKTLGSASYFLGMELVRDRSQRTIYLHQAKYIEEMLARFSMTSSNPVATPMELGCQLSRAMSPETEDDKRAMDSIPY
RQAVGSLMYPAVCTRPDISFAVSKVSQFLANPGSQHWAAVKRIFRYLRGTTYLGLCYQGKALTLTGYCDADFGGDCDTRK
STSGYSFSLGSATVSWCSRKQSTVATSSTEAEYLAASQATKEGVWLRSLLSNLGVSVKTPTRLFCDNQSCIALAANPRFH
SRTKHFGIHHHFVREKVEDGTIELIYCDTTTQVADIFTKALPRDRFQVHREGLGLSPLMSITRDGHSASG
>Copia-6_BD#LTR/Copia 52-4533 via tfasty with OSCopia2, 2 frameshifts and 1 stopcodon. [Brachypodium distachyon]
MANPDTSLPLTSTAAGALTASTAALVSPTILPPGSTPQPVGIAAALGAGTGPGVSPLPVLSSMMMWPPASVVRDAGAIPV
TAASLQHIRIKEHVLTALDLKRNNYGRWSTLFMKVIGRNGLEDHLVAGADHKLEDAEWMKVGLTIVSWLYTTISEEILDI
ILAPHDPAFVVWTKLSSLFLDNMMTQAVYMEEEFCSLQQGHLSVTDYCSRLKVLADGLRDVGVQVSDQSMLFNMLRGLNP
SLGHAIPVLTMQQPLPSFMRARSYLLLKEHRQEQAARRRAAATFFVDRSGAPAPASLQGSPSSSNKKNKKRKTASTSPAG
GGSRFPNSPAAPSxPHGVNPWSGTFQAWQQTPRAPGAGVLGPRPPMAPTAPQAYNANTSMMAPSFSSATPVAPALDPNFM
AAMQQMSLQNNSGGGDDWFLDTGASSHMTSSTGNLSSFSPYSTSSQITVGNGAHLPITAIGTASISTYARPLYLRNVLVS
PNLVKNLLSVRTLSRDNNVFVEFDPAGFSVKDLHSRAAILRSNSPDDLYLVRSSPGARPCHAAFTATSVNLWHRRLGHLG
DASLAHIIRSFPFSCIKDSDASHHCTACRLGKHTRFPFQQSTTVTSFPFQLIHCDVWTSPVVSSSGFTYYLVILDDYSHF
VWTFPLRRKSDALPSLLSFHAYVATQFRLRILALQTDNSKEFDNAALRSFLSWHGIQLRLSCPYTSQQNGKAERIFRTLN
DGMRTLLFQASMPPKFWADALATSTLLLNLRPCKPRQMHTPYKLLFGIPPPYSHLRVFRCLCFPNTIATSRNKLMPRSVS
CVFLGYSADHRGYRCFDPVSRRVLTSRHVHFHEDVFPFAQVNAPPTPAPTPADDAPSFDPAILSLGPKRAAPPASPSRPA
AATVCPAGTSPTSDTPSMHSSGAHPSSGGFVPSADRPVPPTSSIDTAPTPSPSTPSPSTPTSSSILPVVPLAPVHRMVTR
AQNGIFLPKRLFDCTASTTPSPIPSSARAALRDVHCHAAMQEEYDALINNNTWTLVPRPHGANLVSGKWIFRHKTRPDGS
LERYKARWVVRGFSQRPGVDFGETFSPVVKSAMIRTVLHLAAARAWPVHQLDVKNAFLHGILSEYSQQPTGFVDPSKPDH
VCLLSKSLYGLKQAPRAWYTRIATFLRSTGFVATTSDPSLFVLRHGIDATYLLLYVDDIVLTASTERLLRHIITSLSSEF
SMKDLGPLQLFLGIQVTRTAAGFFLSQEHYAEELLDHASMCNCTPTGTPVDTKPKSSSTDGTPYADPSGYRSIVGALRYL
TMTRPDIAYVVHQVCLHMHSPTNAHWQLVKRVLRYIRGITSLGLQLRASSTVDITVYSDADWAGCPDTRRSTSGYCVFLG
GPLVSWLSKRQATVSRSSVEAEYRAVANAVAECTWLRQLLGELHCDIRTATAVFYDNVSAVYLAANPVHHKRTKHIELDV
HFVREKVAIGQVRVTHVPTTQQLANIMMKGLPTAVFDTLRSSLSILHPDAVTAG
>Copia-1_EPa#LTR/Copia 119-4461 via tfasty with ATCopia94, 76.4% SW:3752, 1 frameshift. [Eutrema parvulum]
MVDDGAVVSRTSTRRTISSYDLTSGDNPGAVISQPLLNGQNYDEWAQNLRLALSARKKFAFVDGSIPKPATDSPDFEDWM
TDNHLLVTWIRLTIEPKLRTNISHREVAKDLWDHIKRRFALKSGARFQQLRGALANCRQMGSSVDEYFGRLTKIWDAMSD
CMTTKTCGCNKCECDLTTAHEKEKDVIRVHDFLFGLDDGTHGAVRSQICAQIPLPDLDTVYQTIMQNETVQLNARKEVAP
VMGFAAQAPPNQRRIHGSENGTARSRTTPAGTGVVCTSCGRNGHQASVCFRVIGFPEWWGERPRHRINIQGGNGNVSNRN
QGTNARANSTQIVGAQAEIGANLALTDADRQGLSGLSDSQWQTLLHLLQPKSNSHETRLSGKQNDPVRILDTGATHHMTG
RFDLLTNIRNVSPVSVKLPAGANALSTQQGDIELIPQLHLRGVYYVEGFHTNLISFGQLVTYNYCVGQVTDRLVVLQDRT
LRTLIGVAERESERLYYFRGLETVRAYQTSVSDDRDLWHKRLGHPSSRVVELIPGVRFSSRTSDFSSSSCDVCLRSKQTK
VSFPDSINKAIQSFDLIHMDLWGPYRVSAFCGSKYFLTIVDDYSRAVWIFLLSHKVDVSARIREFVALVKRQFDRTIKVI
RSDNGTEFMCLGQFFREQGIVHETSCVGTPQQNGRVERKHRHILDVVRALQFQARLPIEFWAECALTACHLISRTPSKLL
NDKTPYEMLHGRPPILEHLRVFGCLCYAHNLDTKSDKFASRSRRCIFLGYPQGKKGWRLYDLDLETILVSRDVIFTETVF
PFLSPVHPTTDQLLTALDPPTVALDDFTEPPFESTSDQESPTDLPDPVISTPSSDTQTPAVPRPASIAPTPQLGRGHRPK
QASTRLKDYVVNTVSLSASPATSSASSRTAHPLSNYHNCDRFSSNHRRYLMALSVAIEPHSFVEAMKDDKWKGAVRVEVD
ALELNRTWDLVDLPPSKIALGCMWVFKIKHRDDGAIERYKARLVALGNRQVEGIDYDETFALVAKMTTVRVFLDIAAKQN
YEVHQMDVHNVFLHGDLEEEVYMKLPPGFRSASTSQVCRLRKSIYGLRQAPRCWFAKLASALRDFGFTQTHADHSLFVYS
KNQMVLRVLVYVDDLIISGNSPAFIATFKTFLSLRFKMKDLGFLKYFLGLEVARSSEGFYIFQRKYITDILIEVGLLGCK
PAGFPIDQKNQLAVAAGDFLTNPITYRRLVGRLVYLSATRPDLGYSIHLLSQFMHKPRVDHWEAALHVVRYLKGTLGQGI
LLHADSSFHLTGWCDSDWAGCLLTRRSVTGWFVQFGTSPISWKTQKQDTVSRSSAEAEYRAMTEVLKELKWLKGLLGELG
ISHDAPMTMRCDNQAAIHISANPVFHKYTKHVETDCHFIRDDIVRGIVATAHVSSKDQLADILTKALGRREFDAFLLKMG
IRDLHAPS
>Copia-1_DVir#LTR/Copia 134-4106 via tfasty with Copia1_DM, 1 frameshift and 5 stopcodons. [Drosophila virilis]
MNMSHQIEKLGEDNYDVWHMAMKSVLVVADLWNVVCGKYVKPEGNGEDIEKWVSVDQKAMAYIILNLKPTQLMHIKSCPT
SAAVWKKLKEIHVSVGPIRKVQLYQKLIRFNMQQGDDVVAYVNSFVETIEKLAELDIKLNDELQVIMFLSSLPDTWENFV
IAIETRDELPKFEVVKVKMLEEATRKQERASRDGIGTPEAVYTHKHNGPRDNNSVESKGRKNSSKQPFRGKCFNCEKEGH
RASDCRNKKKDDKKSQKDEKSLCLMHTCVKEKQKSFWCVDSGATSHMCCDRSMFLTYADKKTSIMLAANKFIDSPGSGSV
ELHCNRIKLKLQNVLYVPDLSMNFLSVSAAAKFENSTIFEGKIALIKDKEGNEIIRARHENGLYVYKHSLDQVHMLNSSD
SSSIKWHNRFGHLNFKDLKLLNDKQLVRGMKVENVQLEINCDTCNKAKICALPFPQKANRVSKQVLDLVHTDVCGPMNVK
SLAGNRYFVTFIDDYSRKIFVYLMHSKSQVFEKFKMFKTFVECQTGNKIKAVRSDNGTEYVNKQFTEFLIQCGINRQLTS
SLHSRNQMGVSxRANRTIVEMGQKPPISSKSxxFLGAEAVQTAVYLRNRCPTKAxMGSTPFEVxKDRKPSVQHLRVFGSR
AFALDKVRKSKFQAKGKEYIFVGYSFTAKAYRLYDREKRTVIERRDVKFIEGEFDIATTDACSISDRNTFTTYIIPFESN
HEVAKNHPEQPAEVQEYNSDSNEEEEEDFVSASDPGEDGNDDDNDQVALPQVEAVVKHGRGRPKIIRTGQPGRPRKQYQL
INSLNQIEDIETPQSVAEALHGQNAQDWEKSMQIEYDALQANETWSVCELPPGQKAIGSKWVYRIKRDKDGNIEKFKSRL
VAQGCGQKFGVNYWETFSPVIRYETIRMLFAIAAEKELYMHQVDISNAYLNSKLNETVYMKQPPNFIDKQHPNKVLKLEK
ALYGLKQSGRVWNNTLDEVLRGMDFKRCKNEACLYVKQKQQQFSYIAVYVDDLIIVCPSEEDIAVIKKKIASNFKMHDGG
PISYFLGMEIQRDGDRGSVSLCQKTHIQGLLDKYGMSNCRPVSTPLDPGFQVDCNDDTCVKVNITQYQSLIGSLIYLAVL
SRPDILHAVNKLSQRNANPHGEHQSAAKHILRYLAGTKNMKLVYRKNGKPLKGYADADWGNDRLDRRSYSGYAFFLAGSA
FSWTSSKQSVVALSSTEAEYISLSMAAKEAVYLRRLLSEMGWSKDTEPLTICGDNLSAQHIAQNPVHHKRTKHIDIRYHF
IREKVQCNDIALEYVPTNNNVADILTKCLSKQKHVGFVKTLGLN
>Copia-1_HMM#LTR/Copia 162-3682 via tfasty with Copia-1_BM, 70.4% SW:2849, 2 frameshifts. [Heliconius melpomene melpomene]
MVSQISMGTIEKLIGRENYQSWKFAVKNYLEHEELWQEIEPDAGYQSDSKKNTKARSKIILLIDPVNYVHVQEATTAKQV
WIKLEKVFDDSGLSRKVGLLRDLITTNLENCSSVEEYVNKVMSTAHKLRNINFVVGDEWLGTLLLAGLPDYYKPMIMALE
SSGVAITADYVKTKLLQEVKVSDSVAYYSKAKAYNKQNVSKFSQNNSHNQTQEKRQPKGPRCYVCNKYGHMSKDCYFKDK
KKGSSNTDNSKINGYYAAFPVSAKLDGNCWYVDSGASLHMCNNENWMYDVTPCTINNIKVADNKIVPVKGSGNVDFQIRD
SDGTLQTIQVRNVLFVPTLSVNLLSVSQMINNGCEVKFERDGCQIYKNNKLVLTALHRNNMYIVNNVSEAPALLSTVNEQ
DINLWHQRMGHLNFTDLQKITESAEGVELLKKGNQVCTTCLEGKMSRQPFKNTGTRASELLQLIHSDVCGPMETSSVGGA
RYYVTFIDDYSRKVFVYFMKNKSETLEKFKEFKNLVENEINKKIKTLRSDNGREYINNEFKLFLCKTGIQHQTTNPYTPE
QNGMAERMYRTLVERAKCLILNSRLQKYFWAEAVSTAAYIVNRSPTKALEYKTPYEMWTGKKPNLNNMKIFGCHAMVHVP
KEKRQKWDSKAVKMIFVGYCEHTKGYGLYDMSKKQIYKSRDVVFLEHTVKNNCVIMPLTTLQQQEATELESDTDTFVNES
SEEDKLFDATSELSNSESDNNDPDYTPESFEEEETMPFRNMTLRPRNKPTTFFCHDEKPTDSAILLKEPETVEEALSGSK
AKEWKDAMDSEYESLLQNNTWTLVTLPENKRIIPCKWVFKIKTDANGKVVRYKARLVIKGFIQKKGTEYRVFSPVVRHTS
IRYLFAMAVKENLYIDQMDAVTAFLQGDIDTEIYMNQPPSYEYGHEVCRLNKSIYGLKQASRQWNLKLTPYQEAIGSLLY
LSQGTRPDICFIVNKLRSFNNKPEMQHWLAVKRVLRYIKGTKDCKLIFSQNKEEERVFGYSDSDWASVTNSRRSCTGYTF
LFQGASVSWSSKRQNTVALSTMEAEYMALATATQEALWLRHLESELQYNISVAPTIIYCDNQSAIKFTGNDSYYARSKHI
DIRYHFLRERVANQEIDLKYIGTQEMVADILTKPISQKKTEVFSTAMGLQLRR
>Copia-1_TA#LTR/Copia 113-5020 via tfasty with Copia-39_BD, 79.3% SW:4848, 1 stopcodon. [Triticum aestivum]
MTSAAASGSTATGFLPASLAALLSRPLDAASLQAPIGTRSVGSLFALPPAATSPGQALVAHTAAAPSTAAVAPSATAPLV
AEDVALAGFTASTAAIAPSVTAPAAPLTVSTVVSPQPVSSMGSQPPPPFHFSHLITIKLSSDNYIFWRAQVLPLLGSHYL
LGYVDGSLPCPPALVDSVHGPVYNPAHRVWTGQDQVNLSSIQGSLSPAVAGLVVFAKTSHEAWTILERSFAAQSQAHVSG
LRRQLGECQKLDSTATEFYNNVKSLADTLAFIGQPLTDSEFNSFIVNGLDEEYDALVEIINERGNSTPMPAHEVFSRLLL
TEQRVETRRSRGNGALSANAATKGGRSSASSRAPSGQSPPPASAPPPTATLPGAGGPRVCQLCGRDGHWASKCHKRFQRG
FLGLGNDGKDTRNFAHQVAMADRPPPQKPQGHIQSYSIDPHWYMDSGATEHLTSEMGKLHTREPYHGSDKIHTANGAGMH
ISHIGQASLLTRHANRSLQLRNVLRVPSVTRNLLSVPKLTRDNNVLCEFHPFDLFIKDRGTRDILLSGRLCQGLYRLEHP
GVARVFSGVRVSPSQWHARLGHPATPIVRHVLRRHELPSVSSNKDVAVCDACQQGKSHQLPFxESSREVKHPLELVFSDV
WGPAQTSVSGHNYYISFVDAYSRFTWLYLIKRKSDVFDIFVQFQKHVERLLKHKIVHVQSDWGGEYRNLNSFFQSLGITH
HLACPHTHQQNGSVERKHRHIVEVGLTLLAHASVPFRFWSDAFTTACFLINRTPTRVLNMKTPIEVLLNEQPDYTFFKVF
GCACWPHLRPYNKRKLEFRSKKCVFLGYSSLHKGYKCLHVPTNRVYISRDVVFDEHVFPFAKLPVSTTEPPVMHSSSVAS
DQFDDVAYSPLLLPNHGAGTGRGARLEILEVPSSSSSPSPSSSAPSVVHEEHMAPLHGLGFRAHARPIDALARSPLASGL
PSPSSRPATPPTGPASSVPVSPRASGQSSPGLASPTPASPRVSGPFSPWPASPALASPRPSGPVSPELASPTLGSPMAFE
PLSSGQSLPCSPESSVPSSPEVIPASPATVTSPSPSPPPAPAAALRPHTRSRSGIFQPKQRHDGTVAWLAACMSAALADP
SSEPRTYQAAMRISHWREAMEQEYQALLRNQRWTLVPPQSRVNVIDSKWVFKVKRHSDGSIERYKARLVARGFRQRFGLD
YEDTFSPVVKPTTIRLLLSLAVTRGWFLRQLDVQNAFLHGVLAEEVYMRQPLGFSDPDRPDHLCRLSKAIYGLKQAPRAW
HAHLAMALRAHGFASSTADSSLFLLQRPEVTMYLLVYVDDIILVSSSQSAATALVRSLGADFAVKDLGKLHYFLGVEVTS
RDAGLVMTQKKYSLDLLQRAGMLKCKPTTTPMSTTDKLNVVDGVLLSSSDATEYRSIVGGLQYLTITRPDISYAVNRVCQ
YLQSPRDTHWSAVKRILRYIRFTVAHGLHIRPSDSGCLSAYSDADWAGNPDDRRSTGGYAVFFGSNLIAWSARKQATVSR
SSTEAEYKAVANATSEIIWVQSLLQELSIPQSQPPVLWCDNIGATYLSANPVFHARTKHIEVDYHFVRERVSQKQLQIKF
ISSKDQLADIFTKPLPLPQFETCRRNLTLLDSLESG
>Copia-1_PTri#LTR/Copia 134-4680 via tfasty with Copia34-PTR, 86.2% SW:5610, 1 frameshift. [Populus trichocarpa]
MNNQAAVPAASADPSKSNISNPFFTHHSDHPSLILVSKPLNGDNYSTWKRAMTLALNSKNKLGFVNNSIKIPSEETDPEG
YAAWSRCNDMVHSWLINALSPDISNSVIYYSTAHEVWEDLNERFSQSNAPRIFEIQREIAYFKQEQLSVSSYYTRLKGLW
DELASYDNTTHGAQQDQQKLMQFLMGLNDSYSAIRGQILLMNPLPSIRQAYSSISQEEKQRILTSSHTTIEPINSAAMAV
RGRPNPARHGRFNRSYGSHEPRSQERQPESFNQDRRRQGTFAGRGRPNCSHCGENGHWVQTCYELNGYPMGHSRGRFQPG
SRSFNNRARPAGNHMAESSWARPAVNHVAESSWARPPANSITETNPKVDGSQFMRISEDQLKQLLSLVSKNDDSISQANA
VTKPGLSKITSRDWIIDSGATDHISSSLKLFRKNKSCSLHSVILPSGEKVKIVAKGSLPLNSVYYLHNVLCVPTFKVDLI
SVSRLTLNCSITFFPYWCILQDLATRRMIGLGKQRDGLYYLTALVTNKTINTASPPTKLPTCNLTISSTDLWHHRLGHAS
SPCLSFIAKNFLKFSIRSNNACHICPLAKQSRLPFSPSTISSIKPFEIIHCDIWGRYRHPSLTGAHYFLTIVDDFSRFTW
IFLMRHKNEAQSLLKNFFSFVRTQFETQIKTFRSDNGGEFISLRSFFQNHGVVFQHSCVYTPQQNRVLERKHRHILQVAR
ALKFQAHLPTLFWGECALTAVHIINRLPSPVLSLKTPFELLFSKKPAFSHLRVFGCLTYATNVRISHKFDQRSIPSIFIG
YPVGQKAYKLFDLSNKKNFTSRDVRFHETIFPYASVQPINPPETGPQISETGPIPIMARDIPWPNSSPSTSDTYLPNHLT
SPLPNSPSSSPSPTPSHMSPSPRDPPSPSPLPQPPPSAPPFEHSSTTTPPNNPIPAPIPLRRSSRQTVPPIKLKDFVCNN
VYTDQSLSLSLGPTKGTRHPLFNHLSYHRYMPNYRSFVAQIGTISEPKSYSEAVVHPEWQKAMTSELKALQANGTWTLTK
LPTGKIPIGCRWVYKVKLRSDGSVERHKARLVAKGFTQLEGIDYQDTFSPTAKIISVRCLLALAAARGWSLHQMDVNNAF
LHGDLAEEIYMSPPPGLQRQGENNLVCRLHKSLYGLKQASRQWFAKFSEAMCSAGFIQSRADYSLFTKTRGKLFTALLIY
MDDILITGNDHASIVDTKKFLHSQFNLKDLGNLKYFLGIEVSASKKGIFICQRKYALEIIEDVGLLGAAPINTPMERGLK
LSDQGVLLKEPSKYRRLVGRLIYLTVSRPDITYAVHVLSRFMHEPRKLHMEAALRVVRYLKGAPGQGLFFSSNNDFRLRA
YCDSDWAGCPLTRRSTTGYCVFLGPSLISWRSKRQKTVSLSSAEAEYRAMTGACCELTWLRQLLKDLGLIHHEAALLFCD
NKAALHIAANPVFHERTRHIEMDCHFIRDKIQDGSVITRYVSSTHQLADILTKSLGKESFIPMIRKLGVQDIHSPT
>Copia-1_DTa#LTR/Copia 224-4139 via tfasty with Copia-6_DWil, 79.3% SW:3339, 3 frameshifts. [Drosophila takahashii]
MSFANIKIDPLGRDNYDTWKIQIQALLIKSDVWKYVSGQRSRPTNSQEKALEWDINDSKAKSDLILSISTSELRQVKNCE
TSKQLWEKLESVYQSKGPARKALLKSLILLKMQNGDDMHSHLQKFFDNLDKIREMDMQVMDDLVTILLLYSIPEEYEQFR
VAIETQDKLPEPEVLKTKMMEEYEARKRNNVEPVHDAMFTRKNYKFAPNTNTNFKFKCFNCGKVGHKAKDCKEGNQKEKE
YSGEPKSNSAVAMQVFADKGQWCLDSGATSHMCFQKDKFENIKSESLNLKLANNESAPVVGSGKVLLETSIVTASLEETL
YVPQLRSNLMSVSKITDHGFEVTFRREGAVISDPKTGNMIATAHRKSNLYFINQCREKCNAVSTVSKDSDLQKWHEVLGH
INEVDLKSMIRNEKVIGIKLNLNENMKNCEICIQGKQSKKPFTKSDSKSSDLLELVHSDVCGPMRVKSHGSSRYFVTFID
DKTRWCEIYFLKQKSEVIEKFKEYMHLVENQTGRKIKTLRTDNGKEYVNNEFSIFLKERGIKHELTNDYTPEQNGVAERK
NRTLIEMGRCMMLQSGLPPSFWAESILTANHVRNRVPSRSLNGEIPYNLWTGKKPILTYLKVFGTVAYMLDKQPGRGKFH
PKSKKCIFIGYEPQTKGYRLWCPAERKTYKSRDVRFLDQFEEESQYEDFVDQDHVEMQKIEINLLQVPSTAEPESSPKLE
NKLEVPEMAVPRPETPTARTQLPALATTPKRGRGRPRKRQITMEESAPDDVQGENSAFLSEQSDPKDAAEALSCPDSEEW
KAAMLQEYRALDKNETWTLVDRPTNAEIIKTKWVLRTKRHANGQIERRKARLVAKGFAQTPGVSYGETFAPVARMSSIRM
LMALSVELGMQIQQLDFISAYLNGEITEDVYIEIPNEFEAILSNDDLKKYASNKVCKIRKALYGLKQSGRQWYRKLDEKL
QSLGLQPLSSDPCVYVINKNDMLVIVLIYVDDLMVASNDERALTALKSELAGMFDMKDMGLLKYCLGIEFEQNLEKHEIK
MHQQCYANEVIKRFGMENSNTVSTPLAANEKLTSSDQEGSPETKDLPYQSLIGSLMYLAVCTRPDISHAVSLLSQFNSNF
TQQHWTAAKRVLRYLKASEKCGLTFKKTGKNIVGYADADWGSNIDDRRSYTGFAFIFANAAVSWESRKQRTVALSTTEAE
YMAISDAAKEAVNLKLYLKEILGTQDVVVIFNDNQGAGDLTRNPVFHNRTKHVDIRHHFIRELVENNEVIVKYIPTEKMR
ADVLTKGLSTSKHNECIIGLGMNTK
>Copia46-PTR#LTR/Copia 309-4153 via tfasty with TNT1, 2 frameshifts and 6 stopcodons. [Populus trichocarpa]
MAIKYEIERFNGSNFSLWKMRIKAILRKDNCLTAIGDRPAEITDNAKWNEMDGNAIAIIHLALADEVLSSVAENKTTQEI
WxTLTKLYESKSLHNKIFLKRRLYTLRMAETTAMTDHINTIRTLFSQLTTLGQQIEEDERAELLLQSLPDSYDQLIINLT
NNILSNYLVFDDVAVVILEEENRRKNKGDRNSSNQVEALLVSRGRSTERGSSGSQRxGRSKSRSKKTVKCYNCGRKWHFK
RDCWFKKGMENTAESLKPQGCVASTSEDGEVLYSEAATISTDREELTEVWLMDSGATxHMTPNRDGGTGTIKLKMYDGLI
RTITGVRHVKDLKKNLLSVGQFNSLGCKIRTDNGIMKIVKGALVVLKGRKIVANSLYxxETHHEAEASITSAIPAEEKTM
MWQQKLGHMSEKGLKILSNQKLLPRLTKVTLPFCEHCVTSKHHKLKFGTSTTKSKCILDLIHSDVWQAPVVSLGGARYFV
SFIDDFSRRCWVYPIRRKADVLTIFKTFKARVELEYEKKIKCLRTDNGGEYTSDEFDNFCQHEGIKRQFTTAYTPQQNGV
AERMNKTLLERTRAMLKAAGLGKPFWVEAVNTARYVINRSPSTAIELKTPMEMWIGKPADYSRLYIFGSLVYVMYNTQEV
SKLNSKSRKCVFLGYADGVKGYRLWDPTAHKVVINRDIIFAEDKMQMEENNSILKKTTEVQMENTQNHTSSEVAPEHEEQ
EQIESETPEVRWLTRERRPPAWHLKYVTESNIAYCLLIEDGEPSTFHETIKSTYVSIWMTAMQEEIEALHKNNTWDLVPL
PQGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVIRLTTIRVVLAMCAIFDLHLEQLDVKTAFF
HGELEEEIYMLQPEGFAETGKENLVCKLNKSLYGLKQASRCWYKRFDSFIISHGYNRLSSDHCTYYKRFEEDDVFIILLL
YVDDMLVIGPNKDRVQELKAQLAREFDMKDLGPANKILVMQIHRDRSKRKIWLSQKNCLKKILRRFNMQDCKSISTPLPI
NFKLSSSMSPNNEAERMEISRVPYALVVGSLMFAMICTRPDIAQVVGAASRYMANPGREHWNTIKRILRYIKGTSDAALC
YGGSELTVRGYVDSDFAGDLEKRKSTTGFVFIIAGGAVSWVSKLQTIVALSITEAEYMAATQACKEAIWMKKLMEELGHK
QEKILLYCDSQSALHIARNPAFHSRTKHIDVQYHFVHEVVEDGSVDFxKVQTKENPANALTKSVNTDKYIWCRSSYGLAE
T
>Copia39-PTR#LTR/Copia 100-3481 via tfasty with ATCopia22_49-4503, 1 frameshift. [Populus trichocarpa]
MAEGRNTEVQTVISDVVPMTTKITEHKLNNTNYLNWSKTVRVYLRSIDKDDHLVDDPPSDAAAKKAWLRDDARIFLQIRN
SIDTEVIGLVNHCEFVKDLLDYLAFLYSGKGNISRIYDVCKEFYRPQKQDRSLTEYFMDFKRVYEELNSLLHFNLLSVSQ
ITKALNCCVLFFSDLCLFQDLMTGKIIGRGRESGGLYVLETTIPKIPNPKVPKLVACSSTMTPLQLHYRLGHPSLPILKK
IISSFPKVIHLNCESCQFAKHHRSSYVPRVNKRAASPFELIHSDVWGPCPVLSKSRFRYFVTFIDDYSRVTWLYLMRNRL
ELFSIFSAFCAEIKTQFNVSVRILRSDNAKEYFSKPFNSYMSQNGILHQSSCVDTPPQNGVAECKNRHLLEVARALLFQM
NVPKQFWADAVSTACFLINRMPSSVLAGATPHSILFPSHSLFPVEPRIFGCTCFIRDVRPGMSKLDPKSLKCVFLGYSRL
QKGYRCYSPELGRYLVSSDISFFETTPFFPISKIYNCEGENDDILVYNITTTINHASSNDPVPIKPVITQVYSRRPPPDN
SRPPPAPTSTDPSLDLPIAVCKGKRQCTHPISSFASCIHLSPSLRCFIAYLDSVPVPKTLVEALSHPGWRVAMEEEMRAL
DDNGTWELVDLPARKQTIGCKWVYVVKVNPDGAVARLKSRLVAKGYAQTYGVDYSDTFSPVAKLASVRLFMSIAATNDWP
LHQLDIKNAFLHGDLKEEVYMEQPPGFVAQGECSKVCRLRKSLYGLKQSPRAWFGRFSEVIQEFGMKKSKCDHSVFYQQS
EVGLILLVVYADDIVITGSDSKGISTLKSFLQAKFQTKDLGMLRYFLGIEVTKCKKGIFLSQRKYILDLLTETGKLGAKP
CSAPMVTNTQLTTEDGEPFADPEMYRRLVGKLNYLTVTRPDIAYPVSIVSQFMASPRTTHWAALEQILCYLKGVPGRGIW
YRNHGHTHIECFSDADWAGSKIDRRSTTGYCVFVGGNLVSWKSKKQNVVSHSSAESEYRAMAQSTCELVWIQQLLNEIGL
GSSLSMKLWCDNQAALHIASNPVFHERTKHIEIDCHFIREKIQQNLISTSHVKTTEQLGDIFTKALSGPRIEYICNKLGM
INIYAPA
>Copia48-PTR#LTR/Copia 79-4462 via tfasty with ATCopia21_2-4495, 4 frameshifts and 2 stopcodons. [Populus trichocarpa]
MATISSALSQNIAQFTKLTETNYLTWLQQIKPYLHGAKLWGYVDGTIPEPSLTILTTDTQSTRSIPNPDHASWFIIDQQI
VSILTTTLTENIAQLTIGFDTSKAIWDCLERHFSQKSVASATNLKMQLLDLNKGTQSVDTYLRHAKSIADALISINKPVP
DEDLVIATLHGLGPDYLMLRTVLTQNPPLPDFTELRARILSFDAQQSRPADSPTAIALFNHHQTPSTRRDHRPNTSHQFP
TSGRPNNGRFRRGRYSQQRTTQQSQVGSSFPMQQQHVPPLGPFTSPAWAARPPPNGILGPAPQWCPNCHSSHHGLSQCPH
RFSGPNTATPFAGVHYAADPNWYPDTGATHHMTAMPINNSQPYGGPHNVYMGNGDSMSVSHTGNLPFSLGSSTFTLQNVF
RIPSIRKNLLSVARFTKDNHVFFLFAPDFYQIYCLRTGCLLFQGPCKDGLYPLNLSSVSTSPQALASVHSFIWHNRLGHP
SSNVFARLSPTINSKLSFPSFCRDCALSKSHQLPFNSNKETATTPFHIIHSDVWSSSTISISGFKYYVLFTDEFSRYTWI
YPMRRKNEVLTHFQTLVAKIQNIFHHTIQFLQSDNGTEYVNNAFSHYCKALGIQQRFSCPHTPQQNGLAERKHRHIATMT
RSLLLTSGTPHNLWVEVVLTSVYLINLLPTPTLLGSPHTRLYGSPPSYSSLRVFGCSCFPHLGSYVSDKLSSRSIECVFL
GYSSQHKGYRCLDPTTGRVYISRHVIFNETIFPYKQLQAHSVSDAGSLEFTLLSSSELPQLAPSDPNPLCxEQHSPYLVS
QPEQHEVGIEFPITASSAPSQSLAPAAAPILTYQRRRSLHPVTSQIESTSLQPSAPDATIPQLVSSDPSPVSNPPATSTS
SSPAPPSLPAPPSSPKRTRLQHGIVQPKIHTDGTIKYPIPRALLTAIETTEPTCYTQASKHAIWRAAMADEINALLKNET
WTLVPPSSSQNLVGCKWVFRVKHNPDGTIQRHKARLVAKGFHQQQGIDYTDTFSPVIKPATIRVVLSLAVSRGWSLRQLD
VKNAFLHGLLKEDVYMTQPPGFINQSRPSHVCKLNKAIYGLKQAPRAWFHRMTCFLLSIGFVQSLADSSLFVFQHECHTI
YFLLYVDDIVVTGSDDRLLQSFIDALSRGFDIKDLGNLHYFLSLQVISHNKGVHISQLKYAYDLLVKHDMLLSKPVSTPM
SAKDTLTSNDGALLPNPSVFQEIVRSLQYLTITRPDIAFAVNSIAQFMSQPHIPHLIAAKRILRYIKGSLDHGLFFGPQH
HPTYLAAYADANWAGCSESRHSTSGYLGTNLVSWCSKKQPTIARSKTESEYRSLSHASAETTWLAYLLYELGACIxFPIL
LHCDNLSATYMASNLVFHARTKHIELDYHFVREKVALGSHRVCFIPSIDQPVDLLTKPLHKNRHVLFTRKLVRAGPPSLR
EGVREISSADYVTEERFPLLNQ
>Copia-1_DPu#LTR/Copia 218-4085 via tfasty with SHACOP8_MT, 2 frameshifts and 2 stopcodons. [Daphnia pulex]
PEASQTQKRSRNGKKQDTGARVILMSIITPKEQQAFVNCKTAFAIWTKLAAQYLKNASANTHVLQARFFHYQYVKGNNMM
YHITAIEGIAQQLDDLGSSMSESxIMTKIVSTLPVAFRHFTTVWDNLPENEKNDTAARYLMNEEHKNSSATPTSNPVVQP
AEAFTARSGRPVYKPYRPSENADRKRKREECEYCGKFNHSESTCTRRINAEAGHPDIKCEYCRNYDHSAIDCNKRKRDER
NKSKISPRVKFAKSATWDKSNEDNKGQNGVAFGASSISMEKETWYADSGASHHMCDDHSCMTNYSTISSHRTVKGIGGVK
LTVRGKGDIRVVMEINGIKQNATIHDVFHVSGLGTNLLSIASTTDRGIDVNFTKQMVSFTKNGILVMTGNRSGKDLYRLN
MRTVPVIRNETIACTARVGKLPLSVWHQRLSHTNYKTIVKMVSGDMVHGIRLNDYSIPTEVCSGCALGKMHRLPFKKGRE
RAKQIGELVHTDVCGPMQQPSPNGSRYYVIFKDDFSGYRAIYFLKLKSDVFDHFKLFVCKMKSETDHNIRTLRSDGGGEF
LSTEFVNWLPKKCIRHETTVAHTPQQNGVIERDHRTIGEAERSAMLHMKNIPQELWAESYNCAVYTLNRTLSSSISATPY
ELWFGRKPKLGHLRIFGCEAYMHISDCNRSKLDPTEIKCTFVGYCETTKAYRLWNATSRRIKISRDVLFNETIQPTHPDS
FDSQELDKTSLVVPPIAIPPRHSSRKPQPKRLWAELATEESSVPNFSPEEIKEPTNFQSAISGPDSVKWKAAMDKEYQSL
MFNKTWSLVPLPTGRSVIGCRWTYTLKRGPDGLIKRYKARFVAKGxRQRPGVDYLETYSPVVKLDSLRCILSIASHRDLD
MMQLDVQTAFLHGEVTEDLYVNQPEGFIAGGNESLVCRLHKGLYGLKQSSRLWNITFDSFITKFGFISSSADPCVYYRET
DSEFTILAFWVDDGLMCSTKSSTNEEILSYLESHFSMTSGPADFFIGLQISRDRPKKKLLLSQPQYILRVLKRFHMEKCH
AITGPADPHARLDSSMSPSTSEDIQMMYSTSYDEAIGCLTYAAVCTRPDISFAVSQAARCCKNPGKAHWAAVKRILSYLA
GTTTHGIIFSGEGRTNLVGYTDSDYAGDMDDPSATSGYIFLHLGGAISWGSKRQSCTAISTTEAEYVAASNATQEAIWIQ
RLLSQIGQLPPGPIRILCDNQSAISLVHNPAHHQRTKHIDVKFHFIREKQASHFIEIMYIDTQHQLADIFGLPTPQFNFI
RARIGVVPFL
>Copia-1_DFi#LTR/Copia 72-3772 via tfasty with Copia-1_DY, 88.6% SW:5074, 6 frameshifts. [Drosophila ficusphila]
MSALYQIDKLEETNYVTWKIQMRSVLVHSGLWSVTSGELTESNVPEGQNWVALDNKALATITLSVKTSQLSHIKNCRTAL
EAWTKLRDVHQPSGPVRKVQLYKKLLNKRMEQGQSMVTYISEFVEILDGLAGIGIELNDELRTIVLLSNLPEQFENFVVA
IETRDQLPSFEVLTIKLKEESERKGVTDENGDSTKAFVAAQSTDMQTRKDLQTKRKSIVCFKCGKKGHIKSQCRSADSDG
NNSTLAKNTVNRQSSLLNACDVSNLKNSVWCLDSGATSHMCCEKEIFTKFEKHTEQIGLADAGFLQAEGKGDVKIQTDLC
ILTLKNVPKMNGNFMSVSSAVQNRCKVIFDMKNAQVVQDGECIVKANKIGNLYLFEGGRSKCFAMKAVDGVLLHKRYGHI
NFSSMKELVSKGMVLGVENISLPQNINCKTCMVSKIHVQRFPTSTSNRAKELLELIHADVCGPFPTQSLGGSKYFLTFID
DKSRRIFVYFLRGKNEVLSKFIEFKSLVERQTGKKLKCLRSDNGGEFVNKQFDQFIRHHGIARQLTIAYTPQQNGVAERA
NRTLVEMSRCLLVQAGLGDAFWAEAVNTSVYLRNRSPTSALESMTPMEAWTGKKPSVTHLKVFGSLAVALDKGPKKGSKF
QPKGKEYIMVGYSVAAKGYRLYDAAARQLVEKRDVLFDENHDVEPKGDSVSIELEELEEPCQQDEPDNAENDSDASMHNG
SSSESSDHYESAEDKDADVNVEERRGPGRPKIIRTGQPGRPKKQYNILSALVSENVSIPLTCEEALSCTYAPEWRAAMER
EYDSLVANQTWQIVDLPKNQRAIGCKWVFNVKHDKDGRIERFKARLVAKGCSQKFGVNYTETFSPVCRLESVRFMIALAT
ELKLYLHQMDLGFVACDNEPCLYKQSGEGNLSLILVYVDDLIIACQTQEDLVKIKAGISKSFECTDKGPLNHFLGMEIER
QGDLGEITLGHSQYIKDLLRTHGIENCRTAKTPLDAGFQVDCTSDHCKKVDPSLYQSIVGELMWLALTTRPDILHSVSKL
AQRNQNPHAEHMAGIKHVLRYLASTVEMKLHYRQCGQPFCGFVDADWAGDRHDRKSYTGYIYFLAGGPISWRSEKQRSVA
LSSTEAEYMALSSAFKEAIVMRRLILEIGCGDQSTPIIVYGDNLSAQELTKNPVHHFRTKHIDIHRYHFVREVVKDGQVL
LKYKCTNEMLADILTKNLPKKKHEGFTEMLNLY
>Copia-1_TCa#LTR/Copia 120-4040  [Tribolium castaneum]
MENTTIEKLGITQFNGKDYDHWKFRMEIILDHHDVKRCIEEENATPDDAFLKMDKKCKSLIIQCIANSHLQYVKDKTTAY
QMWISLEAGFQRKGITSQLFLRKKLLTMKLSSNDTMEKHFLKFEETIRELKSVGAKLEEMDVVCHLLLTLPKSFDPLVTA
LETMEPSKLTLDFVKGKLLDCELKRKNQCSEIEVPSSSAFNSRKFNKQQSVWNKKVFPFTCHNCGKKGHKRADCHLLKQA
NQTSSEHVAFVSYSGNAQDETVCKKMKWYVDSGATDHMVNSKEHLTNVRKLESPVKICVAKDNVKLLATEIGDVNAVLRV
NNTVTRATIKNVLYVKNLKHNLLSVQKIELASLNVSFEHGKVVIKRNSKVLAEGKRIDNLYEICFEVENKCKVVCSNVCE
VSASLKLWHRRLGHLSNKNLVTLSKNNMVSGLNIRNSNCNESQICEVCVKSKITKLPFGKRSDNKTTRVLELIHSDLCGP
ITPETHDGKRYFLTFLDDYTHFCVVYLLKSKSEVFEYFKCFESMVSAMFGTKIATLKCDNGREYLPNDLVSFCKGKGIII
KTTIPYTPEQNGKAERLNRTLLEKARAMILESELSKDLWGEAILCAAYVTNRCPTSCLENVTPSEMFYGRKPNLNNLRVF
GSVAYSHIPKQKMKGKFDRKCDVCIMIGYTHNGYRLWIPETRKVICARNVIFDENKTITSVNSKNERHVSETDKEIMTYT
ELQNESEGNVEENKAIAEDEEHKINEDEESDEDKEPDETQTEGLRKSNRKKKRPAHFSDYELEHFALSVESFIDEVPESY
EEARSRTDYHDWEKAIAEELNALNRNGTWTLVEKPKNAKLIGNKWVFRLKRNQNGDIVRHKARLVAKGFMQREGFDYEET
YAPVAKLTTVRTLISIINHKNLHAQQMDVKSAFLHGKVKEDIFMSVPEGLEAEDNVVCKLNKALYGLKQASFCWNNRFND
FAEENNLIRSKNDLCLYCKKTDETELYLLIYVDDIIIASNNLEEIRNLKEKLINVFEMQDLGSLHYFLGIKIRSEKEGMY
LSQKNYLQGLLKRFGMENCKGTGTPMKKGSLLTKDKIDEENLKNKPIRELVGCLMYVMLASRPDLSVSVNMCSRYQSTPT
EELWQALKRILRYIKGTIDYELFYPKQECEQLVGYADADWAGGIDDRKSTTGFLFKVCGATVSWCTRKQSVVAISSTEAE
YIALAEAAREGLWLLHLIKDFGFDDTAFKIFEDNQSCIRLADHSEHKRLKHIDVKYNFIRELVQNKTIKIEYVCTTEQIA
DILTKSLDKSQFNKLSLKLGLTNVNVN
>Copia-2_PGr#LTR/Copia 76-4107  [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MVNPAPSNTSSATSKKEEKEVIVIPTFTGTNFPNWQMTISAYLEFKKLWYVCETDVLGADAPSDLARTNALEVWLIFSSK
ITPEIFNSINSICGRNPFKIWQKLKEDYAAANIYGIYRVWVNYSRITYDDDLLKYIIKIEAALSEISSIGLDVMQEIVSV
SIMEKITDKRPALMESILTDMDTLSNPFSLLAKLRQLANHDQIRKVKEITSQCALNTTSNQKKRSYPTCSDGRHNPETKH
LESECFVLHPEKKNSSKRRATNYNTTTAVEPITKGYTYHTGDSSAGRNAFVLDSGASQHMFNSLSLFVTSEPTHIPIITG
SGEENVSMMATRKGTVHLKLNNNTTMTLKNALFVPSLSTNLISFAQLIKQKAEIVAQNGRLKIIINNQQTIMVNTSNNLF
EIEGIQTATALQTSTAEPSSEFTKWHQRLGHACVPRKTKDCNRQCAFPSLPREICSICVQGKMTSLAFKGHFSPTQQSLE
VVHGDLVGPIRPATNGGARYFLTLVDQHTGFINISLLKEKSDATKAIIEYKRFFEKQTGNQIKKLITDGGGEFVNKTLGD
ILEEEGIQHNVSPPYTPQHNGIAERANRTIIEVTRCCLIQSNLASEYWGEAVLSAAATTNCLPSISKSKASPHFLMFKYQ
PNISFLRPFGCQAWALKPKANRDNKFDAICWEGILLGYANDLSSYRILRHDDKKVIFSRQVRFNETVFPSQAATHPSLDG
VSEESLPVFQFEPILPFENSTIDNERELSPEEANDIPWDTAAAVDNHPISPETGKRWTYVKNFQPADPINSGINEDNILP
GKRTRNRAFFVAVATEPKTHNTAMRSPDHLQWKEAELKEINNMKKHGVWIERPRRPSDSPIASTWAYRRKLGPDNQIIEY
KARICAQGFRQTFGVNFDLKYAPTGKAASLRLLLSFAVNNNLSIHQLDVRSAFLTCPLEDTVTLFPPQGYPCADGTIFEL
KKAIYGLKQASLVWYKRLSNFLQKIGFSATVSDPCVFHRPGSGSKSSTWIYAHVDDLVIIGKDPLAFKEEIEREFEIKYL
GAAEFLLGMNIDRIPSGLHIHQTQYIERKMIEFGLEGSAPSSCPLNPKGHLKSASPAEIEELKNHGGNYRALVGSLNYLS
VLTRPDISYSVSVLSQHLEKPGILHFRAAEQVFRYLSGTKQVGLIFRKQDSLSLSAHVDSDWGNCPDTRRSATGYVVLTH
NQVLSWKATRQSTVSLSSTEAEYKALSDLGREISWLSHLISELDLGYEPTGIPVGVDNQGAIDLARSEISQNGFRTKHMD
IRLHFVRELITEKLIVLKYIRTNKNSADFLTKPTGRSTIRRSLAAIGVQAPPSPAYRQEAQSNP
>Copia-2_GA#LTR/Copia 176-4210  [Gasterosteus aculeatus]
MANRSKSQWPTFDGRAEEYELWEERMLCCMHGVGLKQTILTEPAEPLSEEDRAKDDKLNADAYCALAPLLDNTSLGLIFR
DTKDKGRESLRVLKEHYIGKGRPRIVSLYITMTALKKADNETVTKYIIRAEQIITALRSAGEAPSEGLMMAMIMRGLPEK
YKPFTLMVTHGSADMTLGEFKAKLRNFEASEDADPVLEEAGERVLRAQAAPRKKTGPVEMVCWRCGEKGHRRDDCTEKVW
CSFCRSRGHTDKACTKKERERGARCACVQDGGGGRRPGCEPDGDRGATGGEDRTFRAQTEDASLSRKMLQTQRRGMIVDT
GASSHIINDRSKFKSFDSTFRPERHSMELADGKRTVGVVKGRGDAQVCLISSGGHRCTVTLKNALYIPSYPQELFSVKSA
TAHGAKVFFDEGKDVLESTDGTRFEIYVCKRMYYLQTECDLDDVCHVSYDIQTWHEVMGHCNYDDILKLQDVTEGMHIKG
PKRRPDKECAVCIEGKFTQTRNRDPTNRAKTPLELVNTDLTGPINNESIDGFKYMQSFTDVCTGAVLVYFLKAKSDAVQA
TEKYLADVAPYGTVKCIRSDNGTEFTNREFQTLLRKNKIRHETSCPYSPHQNGTAEREGRTLFEMARCKLIDSGLPKSLW
HYAIQEAAYTRNRCFNKHTGTTPYTALTGKKCNLADMHKFGSECCAYQQDRGKLDSRCDRGFFVGHDKGSPAYLVYYPGK
GKVQKHRLVKFVTKTTCENETQTQELGLDPKGGCDKGVETSQPSVPNTDVLTDRPQSASEDDCEKHPRETPHDSGRYPTR
ERKAPGYLRDYSLEDADDDSTLTSVDYCYRAVCGVPLTFKEAMTSTESGKWKKAMDEEMGSLEDNQTFTLTKLPEGRKTV
GGKWVYSIKGDIDGNDQYKARFVAKGYSQRAGIDYGETFSPTANLTSIRVVMQKAAQDDLILHQMDVKTAYLHAPIDRDI
YMEQPEGYKKEGDELVCKLEKSIYGLKQSGRNWNEMLHTCLVDDNFIQNPTDHCVYTKESTETGKVIVVIWVDDLIIAAS
NTQSLERVKNMLSNRFKMKDLGRLKYFLGMDFSQSDGWVKVSQRRFVEKLLNRFDMQECRVRETPCEPKLEYSEGAPKIS
DVKKYREAVGSLIYLTTCTRPDICFVVNKLSQHFADPTDEHWVTVKHVLRYLRGTADKQLCFTKSQGSLGIRAYSDADWA
ADVSDRRSTTGYCVSMSKGSSLVSWKTKKQPTVALSTCEAEYMALALTIQECIHLEQLLGGMDSYVYEKTVVYEDNQGTI
ALVRNPVCRQRFKHVDIKYHFIRSTIREDKMSLVYCPTDNMVADVMTKPASKLKLKKFGEIMFGV
>Copia-2_TA_gagpol#LTR/Copia 67-6017 via tfasty with Copia-37_ZM_gagpol, 64.1% SW:3246, 4 frameshifts and 6 stopcodons. [Triticum aestivum]
MSTTGIIKVSAACPVFDGTEYPYWKNKMRMHLEAIDVDLWYVVMNDVPKAGEGVTAADVKKFVQLDSTAKNIIYGHLTKG
QYGRVSALETSKLVWDWLSKVNEGVSTQRDQRISVLRNLFNRFKQNDNENVQLTFDRLTDIINELQALGATEITKHEVVK
TLLRSLDSSFDTLALMIQERPDFKTLKPSDILERLNTHEFQLSEKIDIYGPNYGRTRALKAKAVSSSEEESDSSFDDPED
IGRELAMLVKMFQKFTKKKGFRKSSRSSSRNDEASAHDYKKKTCHKCKKPGHFISECPQWDNENKKKKKSKEYDSDDKKK
KKYSKSSSKSSSKSSSHKKSSSGKARAFVGKETDSDEESASEEAEVESEEESDSGVASVATAYVAKSIFNTEDNDFITNI
DANDKDYSASTYCFMARGAKVNTRTTHYQTSSDDDSECGSKPSYKTLAKIATEQQKAMEHIQKLLDRSDDLLGAEMTRSE
SLIEDIKNLHVKYVELESRHETLSTTHEKLSYDYLQRKQDLEKLRAAHEDLQKENESLRAKHISSAQEGFEPPCLKCIER
DNATSVAECSTATTVAISSTVDVVTNPSTEDTTAIADENARLKTLLETGMYKSLKGHQTLCDVLKKQILNRNPRKEGVGF
VRKMNADGSYWKPEQYPKTTWVAAKEPSADPSNLSGFTCANPIIIDESLDANYKLFKNQNGEVFARYIGTNCRNGPPMKI
WVPKRCLENLPVNVIVTPHVKKTNLRLKASYGPKASYKQRTHLSRTNANVLQGNHTQAYEYESGSSNRHVHKTKNYSTYS
YEYYCPPARLFARAPKPKFSDAALRLIASKPPLKMWVAKKAxLSFAGKWSPAENQNHLTLLLGTLNILxGTRSNARMVLL
CTSFLNRLLLSLLVLIWIxAFITHWFIKCFCFTMLLVKPIPLTALxGTTPASSEWIIDSGCTNHITGKRSLLMDSTLRPS
DKSHITFADTGKSKVLGLGRVAISRDQHMDKVMLVESLGFNLMSVSMLCDLNMIVIFGKYRCLVLMESDKSLVFEGYRKY
DLYVVDFSAGPQLVVCLLAKALDGWLWHQRLGHAGMRNLHTLAKKKHVIGIEGVKFKKDHLCGACEAGKMTRAKHPSKTI
MTTTRPFELLHMDLFGPTHYSTLTTTACLYGFVIVDDYSRYTWVHIILYKTEVQDVFRRFANxAMNNYGAKIKHIRSDNG
TEFKNTSLDTYLDTLGITHEFSAPYTPQQNGVVERKNRTLIEMARTMLDEYKTPRKFWPEAIDTACHTINHVYLHKLLNK
TSFELLTSKKPNVSYFRVFGAKCWIKDPHHTSKFAPKAHEGFMLGYGKDSHSYRVFNLFHYKVVEIVDVRFDETNGSQRE
QLPNVLDEVPSSESIKLMGTGEIIPSEAHPEEELIISAPNQHEDNAHPEDIPSNNDNDQQEQNLRPVHPRVANEVQIERI
IDSINASGPLTHSRATQLANFCGHFAFVSIIEPKKVEEAFMEPEWIQAMQDELQQFELNNVWELVKRPDPRKHNIIGTKW
IYCNKQDEHGQVIRNKARLVAQGYTQMEGIDFDETFAPVARLEAIRILLAYASHHNILLYQMDVKSAFLNGRIEEVVYVA
QPPGFEDPKHPDMVYKLNKALYGLKQAPRAWYDTLKYFLKSKGFIPGSLDPTLFTKTYDGELFVCQIYVDDIIFGCTNQK
YSEEFGYMMQEQYQMSMMGELKFFLGLQIRQQRNGIFISQEKYLKDFLKKFGMQGCKGFTTPMPTKHHLGPDDNGKEFDQ
KVYRSMIGSLLYLCASRPDIMLSVCTCAxFQAAPKESHHLAVKRILLRYLAHTPTLGLWYPKGSEFDLIGFSDADYAGDK
VDRKSTSGTCHFLGRSLVCWSSKKQNCVSLSTAESENIAAGSCCTQLLWMKQTLKDYGIHLKQVPLYCENESAIKIANNP
VQHSKTKHIEIRHHFLKDDVVKEDIDIIHVNTEEQLADIFTKPLDEKRFCKLRCELNILESSNVL
>Copia-3_Mad#LTR/Copia 257-4768 via tfasty with Copia33-PTR, 2 stopcodons. [Malus x domestica]
MVTAAQLQILQSPITSLISSVSSSVNVKLDQTNYLAWHFQMQLLLEGHSIIGFVDGSMPCPAQFSQDSSATSTVLSSDSS
TRIPSDDYTIWKMHDKALMQLITATLSPAAVSCVIGSTSSKELWTRLKDQFSTVTRTSIFQLKSELQTIKKGTDSVTLYL
QKIKEARDLLSAAGVFFDDDDIVILTLNGLPAEFNTIRSVIRGRESVISLKDLRSQLLAEETLLENCSHSPVLSALMAQS
NGLPSKNQSFSGNYGNNNHASPNSTAYKSFNNTKGRNRFTPNFNPKYGNYKNFHSSPAPGILGNSPPRSNNYGFLSQPCQ
ICGKHNHMASTYHFRNTNSVQGCQICGKNNHFADTCRFRNSGAPSGCTICGNQYHSADTCFQKNSKPQLNALHAATTSGP
YSPFTVTVPSAPSQQQVWLTDSGANNHMTSDLSNLSLATPYPSHETIQTANGEGLAISHIGSTLLRTSKQPIKLTSVLYV
PKLSQNLLSVHRICLDNNCWLIFDAFSFWIQDKATGRILYKGLCNNGLYPIISSTSPAASFTGHPAAFLGKQVPHSIWHK
RLGHPSNSIVSQVLTSSNVLCVTDTNPSLCQTCLEGKFSKLPFSSSLVKSVKPFDIVHSDVWGPAPCISFDGFKYYVTLI
DHCTKYSWIFPICNKSDVFGIFRAFYNFILNQFQVSIKTLQSDGSGEYVSKAFQTFLSDKGIHHQVSCPHTPEQNGIAER
KHRHIIETFITLLQTASLPSLFWSVACQTSVYLINRMPSPSLHNxSPFQLLYNSKPEIQHLKVFGCSCYPWLKPYTNTKL
DPRTTKCVFLGYASKYKGYICYDVTKNKIYISRHVIFDETEFPYRFLHTTHHSTSSTLPSVLQTPSPVPDHNNVLVFPHH
DYHMNSSSNNVMPNTVPIPISEGSTTHPGTVSISDTESPGCSQSIATSPTQPLSSILPVVPEFQPDQLQVVLSIPPVNLH
PMQTRSKSGIIKKIALLAAVHDNGGVDWTQVEPATYKSALKTPVWYEAMKEEIAALHSQGTWSLVPLPKHKNLVGSKWVF
KIKKNANGSIGRYKARLVAQGFNQExGIDYGETFSPVVKPTTVWLVLALSAHFGWSLRQLDVKNAFLHGILHEEVYLAQP
PGFVDIHHEDYVCRLHKSLYGLKQAPRAWNERFTSFLPSLGFTSTYTDPSLFVKLVDSSVVILLLYVDDIIITGSATTAI
TEVIQSLAKEIDIKDLGPLHYFLGIQILQKKDGLFLSQDKYVTDLLTKSEMLLSKPCATPCLPYNRLLKDDGKPFNNPAL
YRSLVGALHYLTFTRPDIAFAVHQVCQFMQHPMDSHFMAVKRILRYLRATQGCGIHYVKGSLDITAYSDADWAGDPNDRR
STTGMVVFLGSNPISWSSKKQNTVSRSSTEAEYRALSTTAAELDWINQLLAFLHIPVIEKPVLFCDNLSAIALTLNPVQH
QRTKHIEVDVHFVRERVATQQLQVHFVSSTEQFADILTKGLSAPLFQTHCANLRLKFSAPELEG
>Copia-2_TA_p3#LTR/Copia 7297-8202 53.0% sim to Maximus_p3, SW:211, [Triticum aestivum]
MSVGESLGSHSLHSFAEFLQHHINSPEASSCLSSKPKPLKPLNVLKPFSLKFMASEKSARKGGRKRHGETSRDLPDDLSE
LYKTDPEEDYNQRKTRIQWIRRYWAEQWFKYRFVTQEYAEKNAIKRPWGDILYKNLQPRSRDEAIEQGFYPCMVRGPQPV
DAHPSSLLWCRDDILFKRNFQFAQNSAKQNKKTLGLDFNPGPSAPRADGTRDAEPNVIGPFYNLEGLITHILVQGTVVNE
HAADAESDEAPAAPKPKKLKKPKASKPAPSPKISWAKPLATAPPEDSVQSEDLSRISKPEKV
>Copia-2_DPer#LTR/Copia 93-3965  [Drosophila persimilis]
MSGMYQIDKLEEGNYDSWCIQMRSVLVHAELWSVASGDLLPTNVPEGVNWQAKDEKALAMITLSVKTSQLGYIKNCSKSS
EAWNKLKSVHQPSGPVRKVQLYKKLLSKRMDQRQSISSYINEFVDILDGLGSVGIELNDELRSIVLLSSLPEQFENFVVA
IETRDSLPTFDVLCVKLKEEGERKGNTEDQKEYAKAYTAVHKPAAHRAQKKRNNTMICFKCGERGHMKAQCKKESANVER
AARVENKQCSLLNALDADNLKKSMWCLDSGATSHMCCEKQLFTKFEKHTEMIGLADSGFLKAEGKGEVELKTEICTLLLK
NVLYVPEMNGNYFSVSSAVQNKCFVTFGQEYARVIQNGECIVKANRVGNLYMFRGKQNNCFAAVKADGALWHKRYGHLNI
SSMKDLISKGMVRGIENMVFPANMNCKTCMVSKIHAQPFPVATTSRAQDILELVHADVCGPFGTQSLAGSKYFLTFIDDK
SRRIFVYFLRTKDEVFQKFVEFKTLVERQTGKSLKCIRSDNGGEFVNKSFDEFLKTNGIERQLTVAYTPQQNGVAERANR
TLVEMSRCMLVQSGLGESLWAEAVNAAVYVRNRSPTKALTSMTPMEAWTGKKPFVGHLKVFGSVAVALDKGPRKSKLQPK
GKEYRMIGYSVAAKGYRLYDPVSHQVIERRDVLFDEIQDDKDTVTFELPKAEVSMQSGGDTDDIDSSGGDSSHGASVDGE
NPSSSGTDGYESATEKVESDEPAPRVGPGRPRLIRTGKPGRPRKEYNILGALVASDVKIPVSYEEALISIHASHWSEAMQ
REYEALMANETWQLADLPAGQRAVGCKWVYSLKRDKDGQIERFKARLVAKGCSQQYGINYAETFSPVCRLESVRFILALA
AELKLYVNQMDVCTAYLNSDLSDTVYMKQPQGYIDRAYPAKAMLLKKAIYGLKQSGREWNSKLNGVLTNLGFVSCDNEPC
LYQQRGKGNLSLILVYVDDLLIACQSKEDMLGIKSAISNAFECIDKGVPELFLSMEVHREGELGPITIGHSQYIKELLQA
HDMDKCRPVATPLDAGFQVDCTNEQCQKVDPVMYQSMIGELMWLALTTRPDILHSVAKLAQRNKDPHAEHLAGVKHVLRY
LAATMNFKLHYKGCHQPLTGYVDADWGGDRTNRKSYTGYVYFLAGGPISWRSEKQRSVALSSTEAEYMALSAACKESIFL
RRLIIEIGCGDEATSTTLYGDNLSAQELARNPVHHSRTKHIDIRYHFVRQIVEEGQVKLKYASTTDMIADILTKNLPKRK
HVEFTKLLSLN
>Copia-2_BM#LTR/Copia 157-3974 via tfasty with Copia-1_BM, 1 frameshift and 1 stopcodon. [Bombyx mori]
MNNQMALIEKLSGRDNFATWRFAMQTYLQHEELWDCIEDEVKDTKRDIKAKTKIILSVDPINYVHIQEAKTAKEVWHKLT
SAFDDSGLTRRVGLLRDLCNTSLAGCQNVEEYVSKIINTAYKLRNIGFKVDDEWLGTLLLSGLPESYQPMIIAIESSGMK
ISSDSVKAKLLQDVRPPENDSKAFAVTKKFHKNSKKQSKGPRCYTCNKYGHKSPECKNKTKDTQKASNSYAAVFVASTTQ
DDAWYVDSGASSHMTKHRGLLSNENDTPSVKTIRTADNKILNVQCSGQVSLNVCNKKGQENKLLFRNVLCVPELATNLIS
VSQIVRSGGQVRFNQNGCAIINRGQIVATASIINNMYRLNMPGRGYACMSDVDAEDIYLWHQRMGHLNFNSLKKMSDNVD
HVIFSEKSENLSCITCKEGKQTRLPFKSECKRAQTPLQLVHSDICGPMETQTLGGSKYFITFLDDYSKKIYVYFLRNKSD
ALEKFKEFRNEVENQLEARIKVLRTDNGLEYVNNNFSDYLKSCGIIHQTTTPYTPEQNGTAERMNRSLIERAKCMLLNAN
LPKLYWADAVHTAAYIINRSPTKSLSFKTPEELWSGQKPYVKHMRIFGCEAMVHLPQEKRRKWDPKAQKMIFIGYCDHTK
GYRFIIPNSRKVIKSRDATFLESTVKRDYVPIELSQKKHQxILMSSKESETSEMTDDSTSTGSYDTVCDTKSSDSDYLPD
RSYDSLPISNITLRRKKKVQQSSDDPEENTYLCQDEVMLLDVPETYKEAVNSIHKEKWMRSIDEELHAHQKNNTWTLVQR
PANTKVINCKWVFRIKDEPTGPRYKSRLCAKGYAQTKGIDYNETFAPTVRYDSIRILLSVAAQNNLKVIQLDVKTAFLYG
ELEEVIFMSPPEGLPCEENMVCKLNKSLYGLKQAPRCWNSKFDTVLKKYGFVNTKADQCVYVGLVNNKKCYFCLYVDDGL
LFSTDESALLELTKELSIIFEIKVLNKPSNFVGMQIEQFSNCIFIHQTKYIKQMLLNSYMDNSNPNSIPVDPHVKLQKGN
EEPNKSIPYRQAVGSLMHVAIVSRPDVMFAVSLVSRYLNCYNQSHWNAVKRIFKYLKDTIDHGLCYVKTTEPSETTGYSD
ADYANDLDNRRSVTGYVFIKNGAAITWSSQRQQTVALSTTEAEFIAACAATKETMWIKQFLSDISEYKQNSMTLHLDNQS
AISVIKNINFHKRCKHIEVRYHFIKEKYHQKIIALEFVGTDNQYADIFTKALCRDKFAFLRSKLGMCSYNSLV
>Copia-2_BD#LTR/Copia 102-3658 via tfasty with Copia-1_BD, 5 frameshifts. [Brachypodium distachyon]
MTSASTTASTLPSTASTVATSLSSASQSVGSILSAGGTPVLFGHLITIKLAQENYLLWRAQVVPLLKSLGLYGFVDGTLI
CPAETISSTTATGAMTLPNPEHQAWVKQDQAILSALLSSMTEGVLGQFLFLNTSREIWSAIVASFSSQSLARTMQIRRQL
GQTKKRDASITAYFNKMKALSDKLTSIGQPLSVVDFTAYVLAGLDSDYDSVVSTISIGGHAAITERDLFAHLLNHEQRLE
DREGEVPVDHSANVAGRFNFKPYQQQPARPVYNNSGGGQMFTPGVGSSTGGPDQRERPCQLCGKIGHLASKCFKRFKREF
AGIGNDGRGNDGRVASVAQKGYQGNTPSYSIDTTWYADTGATDHLMGELDKLTTKERYNGKDQVNTANGLVMRIMHVGQS
SLASPSSSKLFRLKNVLHVPAVTRNLLSVSQFTTDNNVLMEFQPRHVFFKDLDTRNTLLSGRCHRGLYYFNTPSSKYKSV
FSGVRTSPDQWHCRLGHPASPVVQHVLSHKQLPVESVKNSSTVCDACQQGKSHQLPFSNSDHVIKAPLELIFSDVWGPAQ
TSVSGHRFYVSFIDAYSRFTWLYLLKYKSDVFSVFVQFQHVERLLGHKIKHVHTDWGGEYQKLHPFFNKLGVIHRVSCPH
THHQQNGAAERKHRHVVDTGLTLLAHAHVPLRFWSDAFTTACFLINRTPSRVINMQTPERLLGQSPDYSFLKVFGCACWP
NLRPYNTHKLAFRSHKCVFLGYSPLHKGYKCLHVPSNRVYISRDVIFDEKVFPFSNLPHNASPPHNTPYVASHDQLADVA
NSPLLLPNHGAGSVRGARLQDLTAEQPAADSATADTSAAADISAAAGDSTAADSAAADDAASSTASPPASPSPPPPPAPR
AHTRLQNNIRKPYVRTDGTITYLATVDPQQEPTSVDLALSIPHELLVRSKMDKSKPVATPMSSTDQLNAQDGMLLTVDEA
TQYRSIVGGLQYLTITRPDISFAVNKVCQFLHEPRSSHWAAVKRILRYIRETASLGLVLSRSSSTLVSAFSDADWAGDID
DRRSMGGYAIFYGSNLIAWSARKQATVSRSSTESEYKSLANATVVIVWVESLMAELGLTSERPPILWCDNLGANYLSANP
VFHALTKHIEVDFHFVRERVAQKLLQIRFISSKEQVADIFTKPLSTQLFLGCCRNLNLLPAVSIEG
>Copia-2_CQ#LTR/Copia 66-4097  [Culex quinquefasciatus]
MAESGQEERFFVPLLDGTNFNAWKYRMLVFLEEHELLECIEKEVEEMVELVVKDEDTAQEKAQKQVKIDRRRKMDRKCKS
KLVSRINDDQLEHIQDEKTPKLIWEKLHRVFLRESVARRMHLQRQLHSMKFDGGSLQSHFLRFDRLLRQLRATGAKVDEL
DAVCSLFLTFGTAFSMVITTLESMKPENLSLEYAKCRLLDEEVKQKEIGIESVPAGTSSNRDVAAFSGSAKTKKKLQCWA
CKQEGHKADACPSKKESDRKKKKKSDNKPKAHLAEESGGVCFVGVGSGDGLRRVDWFIDSGCSDHIVNDKSLFESLSPLK
CPIEIAIAKDGESIKAEFSGTVKLFADVGEKLIDCTVKNVLYVPDLRCNLFSVMRVDDVGMEVSYGNGKVVIQHGQRIVA
SGSRCGKVYRLNLFRATPGNSESLLTCGRIPKSLELWHRRFGHLNPKSLVKLIRDDMVVGLNQSVSDKDKDIVVCESCVI
GKQTRKPFVTRETRASRVLEVVHSDVCGPIAPVGVEGKKYFVSFTDDWSHFVVLFLMKSKDEVFESFQRYEAMVTAKFGR
KISRLRCDNGGEYRGKDFEKFCQERGIQIDWTVPYTPEQNGVSERLNRSLVEKARAMLDDSGADKRFWGQAVQTAAFLLN
RSPTRALKENVTPYELWEGSKPNVAKLRAFGCPVYAHVPKELRKKLDPKAWKGVFVGYHQNGYRVWNPELERIVHVRDVD
FAEEKESGSHKSKSLHKISQPIVGDESSDEDQSNDEQEAASVRSAETDGTSSEQPEDDFDSCEEEPLPQGGGVDQPQRPQ
REKTAPAWLKDYEVDYAAYALNAMNYVENLPNSLSEARKRSDWKLWEAAINEEMESLLKNRTWTLEKLPAKRTPITSKWV
FKIKRGTDDKPDRYKARLVARGFSQKYGLDYTETYSPVAKLDTLRTVLALANHEKMVIHQMDVRTAFLNGELTEEIFMAQ
PEGFEQGENLVCRLQKSIYGLKQASRAWNDRFHAFVEGRLKFVRSMNDQCLYTKQTKAGRLIVLLYVDDVLVIGPSQKAV
DAVKSCMSKEFEMTDTGEVDCFLGMKIERDVEERKLRISQRQYFQDMLLRFGMQDCKPASTPMECRLKLLKGAEKDRTDA
PYRELIGCLTYASITTRPDLAAAVNFLSQFQSCPTNTHWAHLKRILRYVKGTLDFGLVYRAKEGAPTVEVFTDADWANDP
TDRRSISGCVYQVLGCTTGWMTRKQNCVSLSSTEAELTALCSAACYEMWLVRLLQDLELKIPEPVTFYEDNQSSIRIAEE
SKDFGRLKHVDVKYHFLRDLVKEDKICLQFLKSEDQLADMMTKGLPPGAFRKHRASIGLADGSA
>Copia-2_DEl#LTR/Copia 89-4359 via tfasty with Copia-1_DPer, 84.9% SW:4589, 3 frameshifts and 2 stopcodons. [Drosophila elegans]
MYMMDKSKRNIKPFDGEKYSVWKFRIRALLAEQDILKVIDSETPDEIDESWVKAERSAKNILIEHLSDSFLNFATSDNTA
REILRSLDSVYERKSIASQLSVRKRLLALKLKSEMALVNHFIIFDELVGELLASGAKMDEMDRISHLLITAIETLSEENI
TLAFVKNRLLDHEVKIKNANNDTSRKVMQAEAKTKFNNNYKNNYKNNNSSKFKQKIIIQIIIHANRIIxNKKxSNIKCHH
CGKLGHMKKDCFGYNKQINTENNKENNKRAHTATTKPGFAFMLKSVNKNVNNSKVNVNFILDSGATDHLINDEALFMDHA
DLETPIKIAVAKHGEYIFATKRGVVRLKNEYQITLEDVLYCGEVAENLISVKRLQEAGVTVVFDENGVKLNKNGVTIAEN
TGAYNMPVIEFKAYKVNSKNTDLYKLWHERLGHISKGKMLEIKRKNLFNDNRLLDNVNPSEDICEACLNGKQARLRFSKY
KIKEHINRPLYVIHSDVCGPITPTTIDDKNYYVIFVDQFTHYCVTYLIKHKSDVYKDFVAKSETHFNLKVVNLYIDNGRE
YLSNDMREFCVQKGISYHLTVPYTPQLNGVSERMIRTITEKARAMVNGARLDKSFWGEAVLTATYLINRIPSRALGDRET
TPYEMWHNRKPILKYLKIFGSTVYVHNKIRKRKFDDKSFKTIFVGYEPNGLKVWDIENEKFMVARDVVVDETNMVNSRAT
KSEILNDSKDNNKKIKFLKESKESMPLNESKEGVECNFQNESMEYFEQGFLNESKDKVNENFQNESMEYFEQDFLNESKD
NVNENFQNESMEHFKLKILNESKDYVNKNVQNESFEQEILNESKDSDNNSVLNESKEGKQPRKISTNEIGNKANDITRRS
ERLKNRPHISYSEDDLSPNNFIMNAHTVFNEVPYSFDEVQSRKDKSLWVEAIKVELSAHELNKTWTIVKRPENKNIVDCK
WVFTLKHDETGNPIRYKARLVARGFTQKYQIDYDETFAPVARISSFRFILSIANQYNLKYHNVKTAFLNGTLKEEIYMKV
PQGIICNRENVCKLNKAIYGLKQAARCWFEVFEQALKECRFKNSPVDRCIYVQDRGDIKKNIYVLLYVDDLVIATSDIKV
LNNFKQYLMTKFRMTDLGEIRYFIGMKIEIGQDQISLSQSAYIKKVLNKFNMEDCKSVNTPLPSKLDYEMLNADDKYDAP
CRNLIGSLMYIMLCTRPDIATAVNILSRYTNKNNIELWQCLKRVLRYLKGNIDLKLIFKKNINYEHIFVGYVDSDWGGNE
NDRKSTSGYLFKMFNSNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKSLLESIYIKFDKPIKLFEDNQGCISIAS
NPSCHKRSKHIDIKYHFSREQIENNIISIEYIPTENQLADIFTKPLPPGRFSLLRRQLGLHQEE
>Copia-2_DBp#LTR/Copia 66-3674 via tfasty with Copia-1_DY, 88.5% SW:5179, 3 frameshifts. [Drosophila bipectinata]
MSALYQIDKLEETNYDTWKIQMRSVLVHSGLWSVTSGELTETNVPEGQQFAALDSKALATITLSVKTSQLAYIKNCLTAV
EAWTKLKEVHQPSGPVRKVQLYKKLLNKRMEQGQSMTTYISEFVEILDCLTGVGIEINDELRTIVLLSSLPEQFEHFVVA
METRDQLPSFEVLTIKLKEESERKGITEERVDTKAFAATHKHNSQTKTYGQKKRKNIVCFKCGEQGHIKSQCRSEGEGDH
RMASRSVVNRQSSLLHACDVNNIDNSTWCLDSGATSHMCCARELFTKFEKHTEQIGLADAGFLQAEGIGDVKIQTGQCML
TLKNVLYVPKMTGNFYSVSSAVQNRCKVTFDIENAKVMQDGECIVKAKKIGNLYLFEGGRSKCFAMSAVDGILLHKRYGH
INFSSLKEMVSKGIVRGIDNIRLPENINCKTCMVSKIHVQPFPSATSNRAKELLDLIHADVCGPFPTPSLGGSKYFLTFI
DDKSRRIFVYFPRGKNEVLSKFIEFKNLVERQTGRRLKCLRSDNGGEFVNKQFDECLRQHGIDRQLTIAYTPQQXRVAER
ANRTLVEMALDKGPRKGSKFQPKGKEYIMVGYSVAAKGYRLYDPSTGQLVEKRDVLYYEHHDVASKGDTVTXEPEELEEA
RQQQGPGDAEIVSDLSIDADSSDESTDQYESAEEKGEHVEEEARRGPGRPKIIRTGKPGRPKKQYNILGALVSENVPIPL
SCKEALESTNAKEWREAMEREYDSLVANQTWQVTDLPKNQRAIGCKWVFNVKRDKDGQIERFKARLVAKGCAQQFGCKLE
SVRFIIALAAELKLHLHQMDVCTAYLNSDLSETVYMKQPEGYSDESNPDKVLLLKRAIYGLKQSGRAWNEKLNGVLVNMG
FVACDNEPCLYKHCGEGNLVLILVYVDDIIIACQSHEDLLKIKSSISQSFECVDKGQLNHFLGMEIERDGDLGAITLGHT
QYIKDLLHTHGSDFCKSAKTPLDAGFQVDCTSPQCKKVDPTTYQSVVGELMWLALTTRPDILHSVSKLAQRNQNPHAEHM
AGIKHIFRYLSSTIDMKLHYRQCGQSFCGYVDADWAGDRLDRKSYTGYIYLLAGGPISWRSEKQRSVALSSTEAEYMALS
AAFKEAIVMRRLIMEIGCGDNDTPIVVYGDNLSAQALTKNPVHHSRTKHIDIRYHFVREVVKKGTEMIADILTKNLPKTK
REEF
>Copia-25_DPu#LTR/Copia 61-4383 via tfasty with Copia-13_DPu, 2 frameshifts and 1 stopcodon. [Daphnia pulex]
MACSNRSLSHVVKFDGSNLPLWKLGLDVALEEHDVQSVTDGTCLMPPEVYIQKPPFIVNHKFVWTRSTYFNSRCLTKTKS
FLSRxLMYKTLQMRAVHEPAEGQAVIDGAQVMLGPILNADAIKDWKTKDYTARRILLSTIEEKLQNTLVGCKTAFQIWTR
LSSQHNKCAANNRYVIQRKFLNYDYQQGNLLSLFIQQTIFFLYLCPSRCPGHDAMSHISAIENLVEQLKNMGEAPTLLQI
CTKIIYTLPPHLRGFIATWEALPEQEQTIALLTAKILNEESKNEMFQPQDLGYFAASKGYRGGSRGGYGGRGGHSGGVRF
QDGPPAKRARYTGPPCEFCTTMGTTAAHPTSECRKRTHAAKRDSANPAFINSPTVDFGFPATFSPLARLDLTDWFADSGA
TAHLTNQKNILQNIVTVPVGSWVIQGIHQATANVHAYGDVLFESTVNGKTRNGLLKRVLYVPDGGINLISIGAVTALSTQ
VTFFGEEVSFTKNDVLEVTGRRAGRTLYKLNLKAIIQSIQEEQACVARQSATSLINWHFRLGHVNCKTIQRMASTNAVDG
LVITNHDVPQVCEGCIYGKFSRCPFHSRSEKPIEVGQVIVADVGGPMQESSLGGANYYVAFKDKCSGHRQVYFLKNKSEV
AGKFKCFVSRFQNETGKLIKSLRTDNGTEFKGIAWTWAEEAGIIRQYTVAYSPQQNGTSERDNRTIVESSRSALYGKRHP
VSLQVLLRLWAEAIAYSVYTLNRTLSRTRMVTPYEKYHDKTRRKWDKKGEKGMFLGYDDTSTGFRVLILETFKIKVSVDV
TFYEGKVPSTKQQNHDTPPKFPFATKQQPDDANQPSDEKDTPSEDNEEASVVPSTQTKANDAQSERDGNADHPRDELVSD
KEVNDATSHEEIPVCANRRYPLRDRKSKVIKSMQSIDVHNSEPFEPRTYQEAMSCEEAHLWQPSVQDEYDSHIQNGTWIL
VPLPPGRKAIGCRWIYKVKPGHLSTPARYKSRLVAKGYAQIDYSSVIGYGPLRGILSMCAALNLDMAQLDIKTAFLYGLV
EEEIYIQQPEGFIVPGKEHLVGRLVKCIYGLKQSPRVWNCKFNDFLLKFGFTRSQHDPCVYHRRREEEILVIVIWVDDGL
VCSNSKTAIAEVLAFLGENFEMRTLPTDRFVGLEIERIREEKKLFVNQVGFIEKILSRFNMSDCNPKSMPANPHVRLSKE
MCPSTRTEKAAMETVPYQQAVGCLNYLTHATRPDIAFAVNQVSRYCHNPGSQHWEAVKHILAYLKGTTQYGICFNGSSGS
SDCALVGYTDSDYAGDLDHYRSTTGYILFFNNGPVSWCSRRQPSTASFNTQAEYQALSDGSREAAFFMWLLQELGVESKR
AVSLFCDNNAAIQLASNPVFRSRTKHINVAYHIVRDYVEAHQIKAERVDTKDNLADILTKPLPSTDFKRFRELIRVRPFP
E
>Copia-24_Mad#LTR/Copia 205-4853 via tfasty with Copia-75_Mad, 4 frameshifts and 12 stopcodons. [Malus x domestica]
MGTATQLQIVQSPITSLISTVSSSVTVKLDDSNYLVWSFHINLLLDSHGILDGSKxCPLRFLDEANLEGVETNAYQVWKM
HDLALMQLFIAILSSTAISCVFGSTNSHAMWTNLKERFSTVTKATIFQMKTELQTIQKGFDSISVYLQKIKYARDYLVAA
DVLFDDDDIIILALSADYNTFQCVIRGRETGISLKEFRSxLLTEEAIIGQSCESSVSFGTAMVACTQSKKGKILTLDHSS
SQSQGFDIGSSSQGYSLNRGSTFNGYNSGQGSSSQYDSGNFNGNYGNSFSSRGYKGTNYRRKGRGGFQYNNGLRFHSPSY
NSSPGILGAPKVFQHTCPDHPTKIPTCQIYNKKGHVAADCFQRHNIPIAGHEAAIQCQICWKFGHSATxCYDKNNFAYQG
RPPSVNLTVMQASHNPSTPLKHFxVANTGATSHMTSELANLDLATQYQGIYTITTASGAGLTISSIGTSTLQAPSHTFTL
KNVLHVPNLSQHLLSIYQLCKDNKCRFIYDDISFWVQNKITGKILFKGLCKAGYYPHSVxIPQNTLPASSILHACYLTKP
ITISLWHQRLGHPSNTVTSAMLQHTKASAFTDTCQTICTPCLKGKFIKLPFSFPANKSVTPLEMIHSDVWGPAHVLSFEG
YRYYASFIDECARYTWIFPLRNKAEVFQIFVKFHAFLSTQFSVHIKTFQSDGGGEYTSHQFQHFLASKGILYQKSCLYTP
EQNGLAERKHRHILETAITLLQRATLPSKFWFFACSTTIYLINRMPYISLKMQSPYKLLIGKPPTFTHLKVFGCACYPLL
KPYNSSKLQPKTTTCTFLGYVDNYKGFLYLDGITNKVYISRHVLFDETQFPYSTTPFAVPQLIQPTSESSLPLSVPSIPS
VSLHNQVTLPISHLHSSLSRVSESMCLISSSATDSLTTSTASEFLETQSSSVSESIQTPLLHHSTTRLLSSPTESSHHEF
TQFPIHDDPDFQQDQLIVDLPIHMNLHPMQTRSKSGIVKRKVYSASVAINSPQLEPKTLKVTAKIPxWQSAMQEEITALQ
SQQIWSLIPFPPHKNLVGCKWVYRIKWNANGSISRYKARLVAKGYSQEKGIDYGEMFSLVVKPTTIRLILTLAAQFKWTL
RQLDVKNAFLHGLLQEEVYMEHPxGFQSSSHHSNNVCKLQKSLYNLKQATQAWNxWFTSFLPGLGFQLSQADPSLFVKHT
SQGTVVILLYVDDVILTGSDPQLVYDVIADLTKEFYMKDLGVLNYFLGLQIQYTSNGLFVSQSKYTKELIEKVDLQDCKP
YATPCLPYHRLLKDDGRPYHNPDxYRSIVRALQYLTFTRPDIAFSVNQACQFMHNPMESHVIAVKRIIRYLKGTSEYGIR
FQSGPIYLQxYNDADWAGNPNDRRSTSGFIVFLGSNLISWALNKQHTISRSLTxAEYRALAITAAELALIGxLFYDLHIP
LQLPPMIHCDNVSAIALSTNPVFHAKSKHIEIDYHFVRERVTRGDLQIQHVSSSDQSANILTKWLSTPLFQLHCGNLMRS
SYKREIEGGCKSSEVKKTNIRVTDKSKEN
>Copia-26_BG#LTR/Copia 37-4165  [Blumeria graminis]
MSLSSTQANIGQAPISLKLDRLPILTGSENYRRWVGSWEITFDAMGLLDFLKKETPIKSEIQSDEFEKWQNANKQLRGLL
LNAVDESLQTVVIDCQTAKEAWDQFKSRFDRETASSTISLLKAVTDLTLRDGDDISEYLSTFNDAWNRLRNRSLHSTTSL
TKAFKDLTSSEDAKGAFLLSSLPKSMENVIDNLVTKEITNYDGVSSKLLDMSANRKAPISDEKAYQVAKQEIQECSYCKS
RKYNYEGHNFKECRKLKAHKQKKIDMKNAAQIAQSSVTAESEHQIYDTAFAAQSQTSSSHPEWIFDTGASAHMTGCKRDF
ETLIPLKNHSVKIADNSHVPVTGKGTVRLNLRNRQGEVYSTILTDVLLVPSFGKTRLFSWDAVSRKGYTLIGKEKDIILR
DKNGREVLWAKAGVKAHLIQLEEYNACFSSYIEFHQALGHPGVTTIKNPSKLYSQANLPLPPPNFHCPTCEKTKSKYVSP
KQTHENATEPFELIHSDLSGKFSVPSLGGKFYYITFIDEYTRHSWVKFLRTKDEAAQHMVDFVHFVQTQFSADVKRWRTD
NGGEFINQTVSTFFRKKGIVHEKTPPYEHERNGTAERFNQTLTTMARALIMNLGLSLWAEAIATACYLKNRLPHTRLPEN
ITPYEALHGNKPTIHHLQPFGRNCFVHIHEDSRPPGSKLLPRALDGKFVGYTSSTKIFRIWIPSKNKVMESTNVKFAPLD
SGEVTINLENRSNLPQAINDEAEQQPHQDNPSIAEQQLSTDDKLDDPSKQIQREIETMHQLKELSIPDSQPETSDMPGSF
LKSPKSRPKRTTRPIQRYGFPASYGSTFHTREEHDNQRGHLVIAEEIQDETGCIAMTLAAKTATETNEDPRNIDEALSGP
DGYYWRDAVNKELQSLRQNHTWDETARPLNRNIVGSKWVFKIKRKADGSIDRYKARLVAQGFSQLPGHDFDETFAPVARY
DSLRILLRIASQNQWIPQQMDVNSAYLYGNLEEEIYMELPPGFRTSGKCVKLRKCIYGLKQSGREWYACISNSLRQKGFE
ITNFDPCVFVHPTENACVAVYVDDILIFGPDNMFRQALKSSIGNDFDCKNLGNASYVLGLEIKLEKSGIRLSQQGYSLKI
LKRFGFENSHKVSTPLDPSVTLFKGCEEDRLENMKEYQAIVGSLMYLVIGSRPDLAYTVTLLSQFASCPNESHLRAAKRT
LRYLAGTTDWDLNYPFGSNELLEVYADASYADDPHSRKSTSGYVIRLGDAAIAWSSKQQRSVALSTTEAEYMAMSQAARQ
LTWTKFGLDQLRQKYDTMLYTDNNGAQELARNPRIHNRSKHIDVHYHYVRDKYNEGDFELLHIKSTNNLADLLTKALAKA
THHRLSNHIRCAKRGEV
>Copia-29_BRa#LTR/Copia 93-4376 via tfasty with ATCopia3, 84.9% SW:4902, 1 stopcodon. [Brassica rapa]
MSSSPAYHSETINVSDNQTILNVNMTNVTKLTSTNFVMWSRQVHALFDGYDLAGFIDGSVIIPPPTLTTEGTIATNPAYT
LWKRQDRLLYSALLGAISTSLQPILSTATTAAEIxTILSDTYAKPSRAHFKQLKNQLKYWKKENKTVDEYLQGLTTRFDQ
IALLGKPLDHEDQSEYVIDGLPDEYKSVIDQIESRDTPPSLTEVHERLLNHEVKLQTVAPPSLSTPVTANAATYNGNKPH
NNSRNQNQNRYGGSNRQGTRQTQTWQQQSFNNRQDTRTTRGYQGRCQICGVYGHSARTCSQLQNQSGSGTGYTAAPWPPR
ANLAAVPPYNASNWILDSGATHHLTSDLSNLSLHQPYNGGEEVTIADGSGLAISHTGSSILPTSSQSLALRDVLYVPNVH
KNLISVYRLCNTNQVSVEFFPAHFQVKDLSTGARLLQGKTKNELYEWPIPSTPIASYHASPSPKTSISSWHSRLGHPSTP
ILKSIVSQFSLPVVDSVQKQFACSDCLMNKTHKLPFHINTIHTKQPLECLYSDVWTSPLLSTDHFKYYLIFVDHFTRYTW
FYPLKNKSQVRETFIAFKALVENKFNTKTVTLYSDNGGEYLGLRPYLVANGISHLTSPPHTPEHNGIAERKHRHIVETGL
TLLSQAAVPKTYWPYAFATAVILINRLPSPVLNNTSPYAKLFHQPPNYNILRVFGCLCFPWLRPYAKTKLHDRSSPCVFI
GYSLTQSAYLCLEPTTGRIYTSRHVQFVEDSYPYRLPQPKPLSSPQPQPQETTVNTFPIALPIPTRPLVSTSSSAPPGSD
HHQTMAPSPSPVHSVPEQRSSIPSNACGEQMTSVMNSTGTSSSPPVPNSSNQLPNSNSNPPNSPVHSPNPSSSSSSQNTN
AQPPPKPPNQHQMRTRAKNNIVKPNSKYNLTVNTRPIIPTTVNQAMRDPRWRNACTDEFNAVTRNHTFDLVPPEPGQNVI
DTKWIFTLKYLPNGQIDRYKARLVARGFNQKYGLDYAETFSPVIKSTTVRIVLEQAVRRDWCIRQLDVNNAFLQGTLQDE
VYVSQPPGFVDQDRPHHVCRLRKALYGLKQAPRAWYEELKHTLLAAGFRNSVADTSLFIYTNGGHQVFILFYVDDIVVTG
SSNTLVDQIIQMLANRFSIKDLGNLSYFLGIEVTRTSSGLHLMQRKYIHDLLTKTKMLDAKHVSTPLAAHPKLTLNSGNS
LTNPTDYRMVVGSLQYLAFTRPDIAYAVNKLSQFMHKPNDDHWQAAKRLLRYLAGTISHGIFIRKNSPLSLHAYSDADWA
GDPDDYIPTNAYILYLGSTPISWSAKKQTGVARSSTEAEYRAVANTASELQWVCSLLSELGIVLPAAPVIYCDNVGATYL
CANPIFHSRMKHVALDYHFIRNNVQSGALRVAHVSTRDQLADALTKPLPRSRFQELFGKIGVTRVPPS
>Copia-27_ST#LTR/Copia 126-4749 via tfasty with Copia-74_ST, 81.0% SW:4929, 1 frameshift. [Solanum tuberosum]
MAIDESTSTAATNVTAGGSSLIDLNNPLYLHPSDNPGAALVPIPFDGGGYGSWRRSVLRALSAKNKLGFVNGECKKPEIN
SIQFRHWERCDDMVTSWILNSLSKEISDSMEYVNNSMELWKELEDRYDQTNGAKLYQIQKEINDLTQGTLDITAYYTKMK
KLWEELNNLCTKNHCTCVCSCGAKENVHKAEQDRRLIQFLMGLNEVYTAVRGSILMLNPLPSMAQAFSILIQEEKQREFK
PHNVMNMDSASLTVSSSRSRNFNHGSTSNTGRSSAGNYVDKSQLFCDYCKRTRHTVKNCYKLHGYPQNNQNSQTEHNKQI
PPAQHTKNPHFNKNTQAYNSNPNYNYKRVAGNVYGTPVDSLFNEGDNQMKKDTDDNVSLSREQYHNVMTMLHHFQVNNAG
AVADSPDMGNGSVNFAGNVVCTSSIDLGKFSCKHFESKSDLWILDSGASNHMTFHKSFLTNIRPLPYPILISLPNGYKVK
VTELGDVTLTPKITLYKVLYVPSFKFNLISIHSLTVPLTGTVTFTDTACLLQAPSMKRPQEIGKCRDGLYFLCSRCLMDS
STSCFSISNSVIENSTYSSHSCLLHSPVIDSNSVLFSRDNEDLLWHNRLGHVPFAKMKAIDSIPANFKTKQPFVCPICPM
SRQTRLPFPKSTTHSTKLFELLHVDLWGPYNTTTHDNHKYFITLVDDCSRSTWTHLLSCKSNALQVIKAFLSLVENQFNT
SLKSIWSDNGLEFINNEATLYFQSKGIIHQRSCPYTPQQNGVVERKHKYLLETARALMFQSHLPQKYWGECILTATHIIN
RLPSSSLHGKCPFEVLYQRKPQYSALRSFGCLCYPTIPKVHRDKFEPRTTPHIFVGYPFGTKGYKVLSLATRKIHVSRDV
VFHETVFPFASAPKGASFDSVSKSLHCIPSSSLIPLNPHLDCEDTYVPVPYSNDHESVSVMDTRSSLDTGLQPAVTTHIV
PTVEDPLFTRKSSRTHKAPAYLNDYHCLTNIHTQHTHSLSLHALFSNNHHITPDALSPDSQFLLQNVCHDCEPLTYEEAA
INPAWQAAMTQEFEALHANHTWDLLPLPVGKRAIGCKWVYKVKHKADGSIERFKARLVVKGYTQQAGIDYVETFSPVVKM
TTVRSLIATAVKRGWNISQLDVNNAFLHGDLHEEVYMEAPPGLMVDAPGLVCRLNKSLYGLKQASRQWYEKLTAALYSRG
YTHSVNDYSLFYKKSTNSTVFVAVYVDDVILTGTDSAEIDSLKRFLHDQFKIKDLGRLHYFLGLEVLYKKDGVLISQRKF
ALDLLKDFDCLHCPSSSSPLDPTVKLKAKEGTVLSDPTFYRKLVGKLNFLTNTRLDISYAVQHLSQFLQDPREPHLHAAF
HLLRYIKRDPTLGIFMSNSHDCTVRAYCDSDWAACPDSRRSVSGYIVLLGNTPISWKSKKQETVSLSSAEAEYRSLRKVV
GELVWLNRLFEELVVPTSTPYAVFCDSQSALHIARNPVFHERTKHIEVDCHFVRDKLHDGLMTLHHVTTSDQLADVLTKA
LTGIKHSAILNKLDVRSTLPT
>Copia-24_DPu#LTR/Copia 96-3464 Fragment (N term missing) [Daphnia pulex]
NGRWNFFCKRCFSHFKVQRRSVQLLQVSIKTGSNESWSTQRSRRSLSEANSSSPSFKSTGIQFDSDCWYADSGASEHMSD
IRDLFNNFQQIPPGKRLIKGVGKNNEALHATGVGDIAIRCKVDDVWHNGTLRKVLFVPNLGVNLFSIGAATERDIVASFD
NNGVTLSNNGKIVGTGSKIQKRLYKMHFLNYQPPTESAALAARAKPNSIQIWHERLGHVNFATLKKMNSANFVEGLFIDN
STDTPLFCEGCVFGKHHRLPFPTCGRTRATKRGGLIHSDLCGPMSVPSLNGSLYFLTFRDDFTGYGFIRFLKKKSEVSSN
IQQLIALFETETNERIVTLRSDNGGEYMSKELMQWIANKGIVHQTSTAKTPEQNGVAERYNRTILESAKSMLHSSTLGTQ
FWAEASAAAVYLHNRVSCKAMQTMTPYQGWHGRKPNVSHLHIFGCDAYYHIPKDERSKLEPKGQKCQFVGYSETQKAFRL
YDPSSGKVKISRDVIFNENLSEAPIMSPPCCDVADVDILTEHRVGGDASASNDRATVSNSIICSNDTQATIEVEDVIEPF
HGFDAPEAAMDPSLKTSRIRRKPDRLIEDPNFLCATTEDSSSIIEPQSYEEAITSPDAKKWISAMEEEMSSLEENQTWRL
EKLPSGRKTIKCKWVYKVKMDSFGHPVRYKARLVAKGFSQKEGVDYDETFSPVVRHESVRAILSTAAANDLEILQLDVRT
AFLHGELTEEIFMDQPTGFTSTAYPTNVCRLQKSLYGLKQASRLWNIKFDGLLVNLGFTRSPIDSCVYHHNGGDGIIILA
IWVDDGLLCGRDKKRLLEIIYQLSDHLEISTQEADLFIGIKIDRDRPNRTIYLSQEQYIIRILHRFKMAECNPKGLPADP
FSRLTLAGVDGGPCSPSCDQSIYREAVGSLMFLMVCTRPDISYAVGQVAQFCHDPKQVHWSAVTRILSYLKGTSQFGVVY
KVGEKPQVLTAYADSDYAGDTDSRKSTSGFLLIFNGGPIAWGSRRQSCVSLSTTEAEYVAMCEATKEIVWARQLLDSIGC
VQTQPTALFGDNQGAVKLTLNPEFHRRTKHIDIRYHYIREQQVSGNIAVVHIGTKDQLADLLTKALPGPAFPELRTRIGV
VPV
>Copia-22_PIT#LTR/Copia 5-5077 59.2% sim to Copia-49_ZM, SW:1305, [Phytophthora infestans]
MSPTTEASQDNKRTSGAEQRREGVNQTATGAVPSGSNSADSEEKGELTENFNPTIGDHHSRVPVTVKDSVFPLAESKDGQ
RSLAKPAEEKETANWQLTIRSLKDRSPSPPARREDTFGNSSTSRRKADTEPEDKMNRVAAVVTLQVDKKLSKPEDYPAWR
LRVLTGLNVSNMAQLVLGKEPFNDSWSSSVKDCWNSRYRKANGLLVSAISDETLIRYQDVVNQADPVELWRVLAEDFGQG
RGVNTVLIWERIYGRMLRPDEPVRDYIADLLKMQRELAENNDPISDSRLAKIMLTKAHAVYPTIADEVTEKLRRDPDYKY
TVRDARGRLENAEIQRNQRVRESSSSAANSRGLASKPQANAVQQHGNSEKGPRRQRGGKYGRNRGSSVASTNTGKSNAER
IAKKKKNSKCNACGEKGHWRGDAECSQGRRQTQTNQGDEQVRSLSGAILRQHEPPVSRDRVVECMTSRDEHAEHAVGGIR
NDDRLISLNDVRSVLGLQAVEQLEQQLHRRNTGAGGVTVRAASPQYSPTSPPSSPVVRSPTYSPTTPASPDYAVNAVIGD
DKHFPAMQADEIEWLLDSGSQVNLCGDLTCFSHVEHGTSSNVMMACGQSEVMQASGSVVFRVENGDTGKWEPRRLDNVHY
SPNAHVNLISLGYMRACGFKLVFNEDQSTAWLCKDGLKLRFDHHDLLYRLRAKRSVRLVGAIEERKDVMGLLHNRLGHVN
MKLIKELANDKADFGFNFNMQSLKDYECVPCLSAKFKRTTYKRGPRRRKNPLEKLSVDLCGINQDTATGEKMFMLVVDEA
TRYKWCYLLRRKDEAAKLIEELVLRLNTQFKRAGHSVTLVHSDQGGEFVNTYLERFCSSKGIEFKTTNAYSPEENGIVER
ANGIVLPRLRAVLHATNLPNLLWGEATLHIIDTLNLLPTAPLNGKSPHELLFGTAPVLRHLRTWGCLVHAYVPPETRPTR
AKLDPRSVLSIFLGYSTTTTGYKLMDLRTGAVTTRRSGNVYFHEKFTVANDYIRRLLLNMYFSGDYELVDVIPVVPITST
LEARLFPEAGSAPDVPATTKSTNLPPEKEIGENAEPVGVVAATPGTELQPAAVTNKKKKKRKRQVSSSSEQDASNEYQSR
CASSPSAEVRSSSPRRVRKVPARLNDYVVGSVMNTTTEIPIPNTYKQAKASKYWPEWKAAMEDELSSLRAHGTWKLVARV
KTKNQTVITNRWVFAVKRDAEGRIQRFKARLVIHGFKQKYGVDYVETFAPVIRFETIRAVILYAVKRGWLVLQYDVKTAF
LYGLLSELIYMEQPVGFEENGGQMVCQLIKSLYGLKQAPAVWNKTLHTLLEKLGLTRLDSDYGLYAIYNDDGDVTMILSV
YVDDLLLMGPTTLCTKIAEKLKNEFTLTSMGEVKFLLGIEITIDRTHNKIMYCQRAHIDKILKAYGMQDAYGCWTPQSTS
ESKANVKAVAPGMKLPYREIVGSLQYLVSGSRPDIAHAVRHLGKYLSCFEHKHYREAQRVLRYLKQTRDHALHLDVVSGK
DVEVTVYTDSDYANDPDDAKSISGYVTLLDGNVVSYGSRKQGINAQSSTEAEYIAMNEGVKDILWLDGLLEELRWSAATP
LLRGDNQAALYLTAKPGKHSATKHIKNKYHLIRHLVEDGQLRTLHVPTDDNTADTMTKPLANAKFTKFRKQLKVLPVSSL
ATATATAEHQH
>Copia-19_ST#LTR/Copia 65-4641 via tfasty with Copia-74_ST, 71.1% SW:3393, 3 frameshifts and 1 stopcodon. [Solanum tuberosum]
MSTDSQASSQSTPALPSSTAGLFPSTNPTGSTMTNVMDQTHPFYLHPSDYPGMTLVSSVFDGKAYGAWRRAIVIALSAKN
KLGFIDGSLLVSNTDPLLQKTWARCNDMVLSWLLNSLSKEIAESVLYSHTAKDLWKDLEDRFGVTNGAKLFQLQKELSAV
SQGNSSVSTYFTKMKSLWDELDALNTYSSCICECECGAKIKNTKAHQDERLLQFLMGLNDTFVGVRSNVLLSAPLPNIGQ
AYSLVIQDEKQREIHATPTYPGDSGSFIVANSGERKYPDLKAQKEGNSGYDGKKSNVICAYYKTPGHNVDKCYKIHGFPA
DFKFTKPRKFQSTSQGSTAFNSSVYNQSEGFTQRYTNAPEVQALSQENITQILQMLQQMKSNKNAGGFEGAANLSLSGMP
KLFNSYACFIEIDSNSWILDTGATEHMTYNREFLSNVKALPKPVMVNLPNSYRVKVTHAGTVTLMSNMILHNVLYIPSFR
FNLISVHKFCAQLRHSLLFTPYSCFLFQGPSLKSPLEIGKEQGGLYILNTRQSTTVPSSQFKPVQVFNSSKKSSSSLATN
SSLNSKKSVSNAIFNSCFSSSSSNVTEKLWHIRLGHMPLSNMRNISVISFPVSSKNLTPCVVCPMARQSKLPFPSSTISS
KSIFELIHVDTWGPYKHATNHGFKYFLTIVDDFSRGTWTYLLSSKSNAFTILKSFLTMVERQFDKKVKKIRSDNAFELGS
GKTHSEFFQSLGIIHQTTCVSTPQQNGIVERKHKHLLETSRALLYQSHLPIHYWGDCLLTATYLINRFPSKVINLKTPYE
ILFNTKPQYSHLRSFGCLCFVSTLSNKRSKFDPRAVPCVFLGYPDGKKGYKVLSLKSLQCFVSRDVVFHESVFPFSSIKS
YVPTDSLFPTANQHTLAYPFFDVFSLLVDDLVSSNDPIIQSTHSPTIAPDSSPQPKPTSPIPSISSSQPTMVDVIRQSNR
PRKTPSYLQDYICNALQLTDVHNSYFLPSVTPESFPFSGLSSTNQNMLNSLSNIQEPISFSxAVHHPGWQAAMESEIQAL
ELNKTWDVVELPHDRKALPCKWVYKVKQHSDGSIERLKARLVIRGDIQREGIDFNETFSPVVKMTTIRCIFATAVKKGWG
LYRLDVNNACLHGDLDEEVYMKFPAGITPPSPKHVCKSLNRSLYGLRQASRQWYAKLTSALNFKGFRHSLNDYSLFVKKS
DSSILIVAIYVDDIVLTGNDQAELHALKIFLDQEFKIKDLGNLHFFLGMEVLRESHGLMLCQRKFTLDLLKEFDILDLSP
VSSPLDPTVKLVAQEGDPIDDPTLYRHLLGKLNYLTHTRPDLSFTVQHLSQYMQDPRKPHLNAALRVLRYLLKDPGLGLF
LSPSSSFELRAFCDSDWGTCPDTRRSVSGFYISLGTSPISWKSKKQTSISLSSAEAEYRSMRRVVAELTWLVRLFDDISI
PISLPIPLHSDSQAAIHIAKNPVFHERTKHVEIDCHFARQQFLAGLISLSHIRSSSQPADLFTKSLSRPLHHTLLSKLGV
FSSPPT
>Copia-22_SB#LTR/Copia 407-4974 via tfasty with Copia-8_SB, 2 frameshifts and 1 stopcodon. [Sorghum bicolor]
MMGENQGIEQVLGKLVELLTAKKDEVSSSSREIVVHAEPVQKIELMPNDVKLEGIKNYLAWSRRALRLLKAKKLEGFVIG
ESSEPSDKSSPEWSTWDATNSLVAAWMLSSMTPVIANTVDTIVSAKEIWKALEKMYSGAGNVMLMVEIEDRLHDLKQGER
SVMEYVAELKSLWADADHYKPIELPHSECVTWVKKWIEEKRVIHFLRGLNPEFEARRSAIFHQPTLPSLDEAIAAISQEE
YRLKVMRETATSPSPASLPRPIFAATEMKENRKCFNCGDTGHLSRDCPKPLRPNNGRGRGTRGALRGGRGYGGRGGYRAN
VVGIEEELSRAAASSVKAEEPKQWKEKVPTSSMKDEEPRQWKDKVESSRDKDQVNYVGDFVNFAYIDEGNYAHVSMPTRI
SQLNWILDSGASKHVTGASCEFESYMQYPPTHKETIQTADGTSQFVKGVGTVQCTPSIKLSSVLHVPAFPVNLVSLSALV
DQLDCRVTLDRENCLGMIPxKLYQERRTGRNLGTATRHSGLWYMDREDTTEALCTVLAATIGEKEANVMLLHCRLGHLSF
NKISKAFPNVMCGVDKSKLFCDACEFAKHTRTSYLSKGIRSASPFMLVHSDVWTCPVVSISGMKYFITFIDCFFRMTWVY
LMKHKDEVLRSFQDFCALVKNQFNTHVQMIRTDNGTEYVNKEFSTFLSAHGIIHQTSCPDTPPQNGVAERKNRHILEVAR
SLMFTMNVPKFLWSEAVLTATYLINRTPSRILGMKTPCEMLLGENKFVVPPKVFGCTCFVRDHRPLVNKLDPRAVKCIFV
GYSSGQKGYKCWSPNERRLFISMDVTFRESIPYYGEKTELSFMFEPHLMGIEEVTREGENNVMENNLVEKVSSIEGVISG
SLSQSRRMGVANDESVPLQEENSQIDLFQNKDVSKVYTRRKFRSSIEATEVAPSAPVHESNQEIIDVSSSSEVEAEPSSD
DLPIALRKGTRTSAGMPPQRYGFEHDISNYVSYASLSPAYRAFVASLQSLKIPKDWREAKNDPKWHEAMREELSALEKNQ
TWDLVKLPAGKRVVTCKWVFTVKQTPEGKVERCKARLVARGYSQTYGIDYDETFAPVAKMSTVRILISCATNFGWPLHQL
DVKNAFLHGDLQEEVYMEVPPGWSKPEASGMVCKLKKSLYGLKQSPRAWFDRFRWALCDMGYKQCNGDHTLFYRHLGRKI
TMLAVYVDDIIITGDNEAEIECLKKNLSKQFEVKDLGQLRYFLGIEIARSPKGIFLSQRKYVLDLLSETGMLGCRPASTP
IDQNHKLCAESGDPVNKESYQKLVGKLIYLCHTRPDISYAVSVVSRYMHDPRSGHLDAVNWILKYLKGSPGKGLMFKSHG
HLNVEGYCDADWASSLDDRRSTSGYCVFVGGNLVSWRSKKQPVVSRSTAEAEYRAMSQGLCEILWVRNLLSELKVLRKGP
SMLHCDNKSAISIANNPVQHDRTKHIEIDRFFIKEKIDDGVIVLGHVTSNEQVADCLTKGLGLKQCELSCNKMGMIDIYL
PS
>Copia-23_DPu#LTR/Copia 95-4262 via tfasty with Copia15-NVi, 1 frameshift. [Daphnia pulex]
MATGTFSAKDVSHITKFKGDQFSFYKFQLKLVLKNHALLKIVEGDEQKPAAIVLLADNSNNAAVIARNTQIDEWDKKDTA
AQNYIVATLEEKVMRTIMNCKTSNSMWIRLLNQYELASVENKHLLMGKFMAYQYDPTHDIMSHVSAVESLASQLSDVNSP
ISNDQIIAKITSTLPLNGNRNYRSFMSAWNSTDDAVKTLSLLTSRLQVEENMLKLTEMSSTLQMEHSLQAKKKNKVVFSE
SKSRDFSSHGRPKPICGHCRNLNRRASHREEDCWIKEAYLKGRQDAGSEEAMLAQPRKEKTPAPVFDDDYAFKSADLQLN
NECWYADSGASEHMSDQKSIFQSITPINRGDRAIKGVGKNNEALYATGVGTVIIKTKVNGEWHDGLLRNVLFVPDLGANL
FSIGATTERGATATFDKNGMELWKNGKIVATGSRIQKKLYLMHFTNCSSPSVTAALVANRVPNSLQLWHERLGHANHSVV
HHMHSSNLVDGIKMEKSCSPPPFCEGCVFGKHHRLPFPTSGRTRATAIGGLIHSDLCGPMPTPSPNGSLYFLTFRDDYSG
YGFIRFLKRKSEANEHIQDLIARFETETGRSIVIFRSDNGGEFMSKDLIQWLAKRGIIHQTSTPKTPEQNGVAERYNRTI
LESMKSMLHSSTLPVKLWAEASATAVYLLNRVPCKAVPTMTPYQAWHGRKPNVSHLHVFGCDAYAHIPKDERTKLDPKGV
KCNFVGYSETQKAFRLWDSSSGKIKISRDVIFNESIQAPSLLPVAVPRTDLETVSVIGVGGDACEASNGRATVSNDQRGQ
PASDSDIIAEPFHGFEQPEKPILGDHHLEPSVDSPQRPSRIRKKPNRLIEDPNFLSHTDMNVAPDEIFEPQTYQEAISCP
ESAKWISAMEEEMESLRSNETWQLQPLPEGRRQIRNKWVYTVKYDSANRPTRFKARLVAKGFSQKEGIDFNETFAPVVRH
ESVRVILSTAAAHDLEIIQLDVKTAFLHGDLHEEIFMDQPSGFISSDSPNHACRLLKSLYGLKQAYRSWNIKFDGYLCAL
GFVRSLADPCVYRRSEEDGIVILAIWVDDGLLCGPDKTKLLELISQLSTHLDITARDADFFIGLKIDRDRTRRVIHLSQE
QYTNRILRRFEMLECNPKMQPADPYVRLTINGIEGGPNSPTMDDSIYREAVGSLMFLMVCTRPDIAFSVGQVAQFSHNPK
QAHWTAVQRVLAYLKGTSKCGITYGETSHPHVLTAFSDSDYAGDSDTRRSTTGYLLIYNGGPVAWGSRRQSCVSLSTTEA
EYIAMCEAAKDIVWTRRLLSGIGCDQKQPTELFCDNQGALKLVSNPEFHRRTKHIDVRYHYVREQQMDGSIVISHVGTKE
QLADLLTKALAGPAFQDLRRKISVHPILV
>Copia-22_ST#LTR/Copia 104-4488 via tfasty with Copia-57_ST, 75.9% SW:3884, 2 frameshifts and 4 stopcodons. [Solanum tuberosum]
MAATKIDHTHALFIHPSDTTGGPIVPIQLTGSENYSIWSRSMRIQLLGKNKLGIVDGTxKKEDFSSDLAHQWDRCDAVVI
GWILGSVTKELHAGIVYAENAKMIWEDLxEMFDKVNTSRVYQLHKDMVTLIQGTDNVSTYFSKLRHFWAEFDSMTPPPCD
CAKSKDFMLHIQRLKVMQFLMGLNENYEQARSQILMTSPTPNINKAYSMLIERESQRSIVNSGDRVELGAMMAGRGNSYH
RPPKNWNLQCDHCKLKGHTKDVCYRLVGYPPGYKGKKKEEFSNANNVRNEDTGAHRYQGEAIAYNAQTENIHPNVCAGYK
TECSTGKGDLQRAPYMTENQQDKIKMMLDNDKQPDYMAHMAGIDFKPLSTVKQIKWIIDTGATNHMTASLDTMTGIEHVR
THHKRKVHLPNGEVTMVSHTGKCSLGDIGVLENVLYIPDFKYNLLSVSKITKELNCFVSFYPGFCLFQDLTSGILKGIGK
ESAGLYIMFSPQHDTHFSADSNAEVHRAHVAKKKHEDILLWHRRLAHPSSVSMKHLLGYKLDECKSIVADCEVCPLAKHT
RLSFPHSFISSFYxYFCxVFELLHLDVWGTYHAETFDGNKHFLTIVDDFSHVTWIFLLKFKSDVILIFKLIHTQFQATVQ
MIRTDNGGEFVNSEMQQFLQELGIIHQTTCVYTPQQNGVGERKHRHLLEVARALRFQGHVPIRFWGHCILTAAYVINRLP
STVLGGKSPYELFFGKPPSGTHLRTFGCLCYASALPRKDKFASRAVPSVFMGYSTTTKGYILFDVAQKRFFVNKDVTFRE
HVFPFQSSPEPVPQVDQFLWSSESFPPSDISSIDDPLHTVTVNDPASPLPTQSSSSPHPSPSPVVSTASPDTTLPVSIPS
PPRRSQRVSKAPLWLVDYVTKKAAHVTYPLSAHLSYATLSPAYQVFLSSLSHIQEPRSYHEAIKDNRWVDAMNSELEALQ
LNHTWDLVPLPPGKMAIGCRWVYKVKLQASGEVERFKARLVAKGYNQQEGLDYHETFSPVVKIATVRIVLSLAAQHNWHI
HQLDVYNAFLQGDLDDEVYMQLPQGLPSQGESSGTVCRLVKSLYGLKQASRQWNLKLSDALVHSGFVQSCMDYSLFIRKK
GNDIVIVLVYVDDMLVTGSSSISAIEETKASLHEPFKIKDLGTLKFFLGMEFHRSSKGILINQRKYVQEIISELGIGSVK
PAWTPLEVNAKLTTPELDELTQKTDDDMLEDKTKYQRLIGKMLYLTLTRPDISYAVQTLSQFLQQPKQSHWDAAVRVMKY
IKREPALGILLSSKASNSLTVFCDSDWASCPNTRRSVSGFVIKHGSSLISWKSKKQSVVSRSSAEAEYRSMANAVSEVVW
LTALLKELDGEIITPVIVHSDSKAALQIAANPVFHERTKHIEIDCHFIRQKIQEGLIKTVHVGSKDQLADVLTKGLPRPQ
HEFLVGKLGMLNIFIPASLRG
>Copia-30_BG#LTR/Copia 5-4936 55.4% sim to Copia-9_SMo, SW:1171, [Blumeria graminis]
MXPVFNNSSASVSEQSSTMSSLTAELRGTRNQDGLPLYKSNWGNIVILGLGTYTEWRITCEIALINAGVLSIADGTWKRP
NANNYVHALRPXTRSVSSSAPHHDVDTNDNEFQVQEEKWLSKARDTQVIISNSIETQLMEQSLGFLRNIDPAGLWNFLLQ
MDPNKDPTTIAELRSKFASMKFDPRVDTIQSLVLRLNSLRVKLSMTSRSITEEDVKEQLIASLPKDNFIWSTARSHALNM
GRSLAETITYLQSCESNISHAQPPQPQAANLARSSNRKRGRGTYQRGRNLTHFDRRDQARGEPNRKGKYRGMATDEKECF
FCGRKGHVERDCRIKQSKSREAKNMNKARSDANAQYVQVRNINENDSPYLSYHLEHSHTACSEQNLDESLPLSKISSKSK
SPQNKRISENIQSLITSGIHKLLKFTRLLNPNATAFPTVTKHALLTKPREILTIIDSGASEHFSGMRDDFSTLKRWSSPK
SVQIADGKVIQCEGYGNISFRTSDKEIELREVWFIPEFGQMRLLSVWAFNKRGINVKFADGHCQITRNGSILFEAEGEDG
VFKVKTKSIPQATSATKVQQQMPHQTETEWDILHRRMGHINIKDIDKILKTGYTGLKVPSEKRSIPIGSNSCEACLAGKM
KENFNKKSDNRSNTILRRVHCDISGIQSISVRGYRFFFLMVDDATRMCWVRLLRTKEMNEVLVTFKQIKAEAELQSGNKI
VYMRADNGRSEFGTALQHYLKEVGVTFEPSPPYKHSMNGVAERWMGIIAVIARSMLYEAQLPHQLWDYAVEHAAWIKNRA
PTSALPFADNDAPERFTPYSAYYGKPADLANIRVFGCKADVLYPAELNPQKWQPHIREGKFIMIGMTSTKIWKLLDTLTL
RDTISADVEFNEYEFPKIDISLFTLPDRLDVLTPRQVPLERTKMYQSQLIEARQKGVKQARKKYAAIHPIGAMSSSENNS
ELQNPVTRLREARDASDQRYIQKAPIRMVEQETYIGSVELQTPAIRREGSCHENAWRKLSREPMVEASLPTAVVEEATMR
VVEQENLGERMNFDESAPQIIGEAIEQSIGQTPCSLPKSRFGRPLRRVAKAVFNHVVTANAISAQAVHINAGESSSIQVP
TPPFESITVEQAMHEDPKLWKEAIKSELRSLQATNTYTILTGSPPPGKKIISSKIVLRKKFRSDGSLDRRKARIVVRGFE
QQYGIDYFETFASVIRYNTLRILLSKAAVDDLEIEALDVDTAFLNPKLEEEIYMEIPDFFSLQHPGINRKENYLKLNKSL
YGLKQAPHIWFKEVKDHFNRISLRSGDSDPNLFIGRGVFVLLYVDDMLIIGKRGNLNPVKLDIMNKWSCKALGPVDTFVG
IQVERNRQERTIRIHQTAYTTKLIQRLGMDKSIPKDLPLPAGTVLKPTSEDDIQQTLKDDDVCLYRQIIGSVLYISNGSR
PDISYAVGQLARFMSDPDSNHLSMAKHLLRYLNGTRSLGIRYRPSDTTNIWAAWTDATWGTENDKKSFQGQTIIWNGGAV
TWSANRQKSTAQSSMEAEIMSASEGAKEIAWMEKIAQDINVKITKPPLLYLDNQAAIELAKTTKFHRRAKHIEIRHFYIR
DDMVMRNRLIVTFTPGTEQIADILTKQLPRDQFVKLSSELGLSN
>Copia-33_ST#LTR/Copia 81-4508 via tfasty with Copia-73_ST, 80.3% SW:4250, 5 frameshifts and 6 stopcodons. [Solanum tuberosum]
MVMDGVNINPAFSSVLGTNRTVIDHNHPLFLHPNNTPGSFLVSLQLTRSANYALWSRSMKLGLLGKSKLGFVDGRHTKDK
FDASLHDQWEKVNALVLSWIMNAVKSDLLSSIIYASNAHKVWLDLQERFDTINGSRIFYLHREIVTLTQGTQYVSDYFSK
MRTLWDEFDALMPCPGCNYPESRNYSQHCGYQRLQFLMGLNETYAQCRSQLLMMSPLPTLNKAYSLVISQESQRSIASLS
PVSQVVESIEGTGFFSHKGGTRVNNGRNNYSGGKMNSRRNFSGGGSSYGGNYSGRMPPASGVKPPKKSSIICEYCNYNGH
TKEQCYKLIGYPPEWPSSKKKGVFANQVGSYGKSESGVNCSSDSETATQCNLGTTQSSAGSHGSLPPYFTQKQYTQIIQM
LSKGNEWEPSNAGIQTASFPSNVDTSWIMDTGASNHMTSNYHMLSNYTEVSNPEKSKVILPTGGTVQVYHTGSSHVLNNM
ITNVLFLPDFQFNLLSVSKLTKELQCSVAFFPNFCLFQDLYTGIMKGIGRESQGLYVLKDKAITQSQQCFFYSCASSVNQ
RSHSSSLWHKRLGHAPLEVLKKHESLKHLVLADYVCIVCPLAKHTKLPFRLVGHSSKSSFDMLHCDIWGPYRVPSHNNKR
YFLTIVDDHTRYTWLFLMQFKSEAIVVLRDFLTRIKNLFSTTVKVLRTDNGCEFFSTEFxLLMSTLGILHxSSCVYTPQQ
NGVVEKKHRTILNVAMSLRFQVGVPLKFWRECVTTALYIINIVPSKLLHFKSSFELLYIHPPSLSHLRVFGCLSYASTIS
LSDKFAARATLGVFMGYSSTKKGYNIYDLHSQSFFVSRNIVFHKSIFPFLHTKSLGSPMFPVLQFSHLEVQSSSPSPSPP
PPQLIPQPPPPVPSPVEPRKSTRNRHPPRWMTDFVTLSSYTCSYPMSSYVSYSNLSQSYQYSLHAYSSISEPSSFQQASS
YPSWVQDMQLEIDALESNHNWSIVELPPGKVPIGCKWVYKVKYKSSSEVERYKARLVEKGYSxQAGIDYSETFSPVAKMV
TFRSLIALAASKQWCIFQMDVHNAFLNGELVEEVYMHIPERFSRxGESKMVCKLHKLLYGLKQAPRQWNKKLTDALIxMG
FTQSHYDYSLFTKKSGEELVISIVYVDDLLVTGNNLILINKAREDLKHKFKMKDLGERKFFLGIKVARSQEGIMICQRKY
ALELVSETSLSGSKPVNAPLEVNQKLTYVEYDKNISTKTGHNDETLRDPTAYQRLVGKLLYLTMTRLDIAFAVQVVSQYM
HCPKRSNMEDALRVVRYIKGSPGIGVLMPSxATSQLFAYCDSEWGAYLETRKPVTGYLVKFGGAVISCKSKKQETVSRSS
AEVEFRSMVACTAELAWLIGLFREFGVHIKQPIDLMCDSKVAIQIAANPILHERTKHIDIDCHFVRERITQGMIRTDHVS
TEEQLAYILTKGLGRSQHEYLVSKIGLKNLFQPSTRE
>Copia-33_SB#LTR/Copia 39-4721  [Sorghum bicolor]
MSTESARVRAAAAAAAAAAVASTVEQRGAGAFGAGGDDRRTRLAAAEAAAAAAAATAQQAAAAAQAAVDAAAALRRELEQ
EDAVSAGSRSRTPERRRQSPSPERRRGRRGRSPVPQMVYRDSGAGTPWPMLTKSNYHEWSLLMKVKLQARHLWDAVHVGG
VTYEEDRRALEALCAAVPLDIAASIANKRTAKLAWDAIALRRVGGDRVRRATLQRLRGEWEGLAFQPGEHVEDFAVRLSS
LMEQMKLNGDTDLTEERAVEKLLRCMPKRYRQIVNSIETLLDFDALTIEDVTGRLKSVQDRELADDLESANAGGKLLYTA
EQWRAFDKKKKAEAAGPSKDKRRRPRGGKKNKPRGDRDGCGAGGGGAQADKAGGADGEHKANRDDLCLNCHQAGHWARDC
PHPRRNRERGGAANVAQVDEDAAAFLAHGFLELDAQGSCSKAQASIFCAKNGCLELEEPRARAYLDTGNEEKMDGWYLDS
GATHHMTGRHELFTDLDTSARGSVRFGDESKVEIHGVGSIIFEAKNGEHRVLHGVYFIPALRNSIMSLGQLDEGGSKVEI
EHGVLRIWDRHRRLLVKVRRGANRLYVLHLNQAKPLCLAARKDDAAWRWHERYGHLHFDALRQLSKNDMVRGLPAITHVG
QFCDTCVLAKHRRAPFPAEAEYRAQEPLKLVHGDLCGPITPATPGGRRYFLLLVDDATRYMWVALLTTKDAAADAIKHLQ
AVAEKGSERKLQVLRTDNGREFTAMEFAAYCADEGIERHYTAPYSPQQNGVVERRNQTVVAMARALLKQRCLPARYWGEA
VVTAVHLLNRAPTGSLQGKTPYEAWHDKTPAVGHLRTFGCVAYTKDLTQLKKLDDRSRPGIFIGYADGAKAYRVLDPATQ
RVRVSRDVIFDESRGWDWVKAGEDAAPVNTEFVIEYAVFSGKEGARGESSTTSSASTTPTTAVAPAAPTPSPTTPTTSAS
PTTPSSSPAPGENGSSPGAAATPSPTTTPTTDQPQVELATPLEDDEDRLDAFYDDEPLRYRKMTNILGDVSLPDLAPRLF
AQLHLTHAGEPINHAEARGDPAWEAAMKQEIESVERNKTWELVELPAGHRPITLKWVFKLKKDEKGSVIKHKARLVARGF
VQQEGVDYDDAFAPVARMESVRVLLALAAEEGWSVHHMDVKSAFLNGDLKEEVYVRQPPGFAVAGEEGKVYRLRKALYGL
RQAPRAWNAKLDATLKAMGFTQSAHEAAVYRRGSGRSVLLVGVYVDDLIITGAEEEEVKSFKAQMKERFDMSDLGLLCFY
LGVEVRQDARGITLRQTHYAKRILELGEMIGCNPAHTPMEEKLRLSRESKAEEVDSTHYRRLVGSLRYLVHTRPDLAFAV
GYVSRFMERPTVEHLQAVKCILRYVAGTLEYGLHYKRAPGTARFIGYCDSDLAGDIDTSKSTSGTMFFLGDCLVSWQSIK
QRVVALSSCEAEYIATASAATQALWLSRLLGELLGKEVDVVELKVDSKSALALAKNPVFHDRSKHIRIKYHFIRDCLEDG
SIKASHIPTTDQLADILTKSLGKAKFQEMRRRIGLEQINQH
>Copia-34_PIT#LTR/Copia 15-4404 via tfasty with Copia3_XT, 64.0% SW:1380, 1 frameshift and 1 stopcodon. [Phytophthora infestans]
MSTDAKSGGGLEKFKGKSYTMWKDKLLTHVNQLDHQYQRKQLEKGQPEAKVLMADFLRGCPDKPPSPTNTMDEQEALSIK
WDMMHWMRGRGDLQNLINQVLPYFFLNTLPDVVSSMDPSEVIRLLEKDFGQGDAAGLIDLMRAWAKLTRGPWRDLRSLFA
QLKKAKSEINRKTKKLFDEEMVTESWVCVEVLSLLPSEFWASSISLKKGDFNIDQVESALRKIFGDKSKKEVGLMDKSHP
ITISNVRVNGGQKRKMGGNEGGKCFYCLQTGHFKANCPTMAADRDPNRSGGPLFRTDVNTAPGAKKAKKGRTTAINTITA
VVKDGKTHVNKDGKTLLEECMEDEAMDDIESLNPALHEDFEDMGNSTQTPNEALQDMDQLEDEVRKQNASYLKTLKRLTV
TDDMWVVDTGAGRAITSDRSWFTGKLRPGQNTVFTYGNGTVSHSSLKGSIKLSVLTPKGRLSDISLTDISFDRQCDSNLL
SSYYLARHGYRHLQSKSGDFLFFLEKNFKLLFAAVAIGEVYYLPSAKPARKSAFNAQLSKVGDILKEWHLRLGHVGKERL
IRSMSNQKLKGLPNLSYSELKKVSFFCSTCASMKDRRMSYRNLIGNKSKHTLHMDSTGRLRVNGLYGSFGYRYALAVVDD
ATAYKWYFAVKSLKEVRGKIRTLLKQLEVQFPLFKVRRIRTDGGTEFLNSEVSKLCSKLGLDFQSSNVESQEENGSAERA
HQTMMAGVRCTLRGANMPAKWWPEALLYIVDITNRLPMARLGMKTPYELLHRKQPSGLAFRIWGSKCFAHVPKSKRKDPK
LGDRAIECKLLGLSPKYKGYRLLDVKANKYLIARDVKFSLTGTEAMIRRSFPNEDSSIDHEEVHAIGQLGKQPRGTVAGE
VPADESSEPVTDPPTSRLVGDKRQATSDVRRSKRQRTRNVRLSDYVTQLNLVASDKPDRIPVPKSIKEARLSPCAKQWES
AIKAEYDALLSNNTWELVPLPNGRRALGCHWLFDVKYHADGSVDRFKARLVVQGNTQLYGIDYKKVFAPVARYESLRVLL
ALATILGLELHQMDVSTAFLNGILHESIYMRQPLGFRHGTGHLVCRLKKSLYGLKQAPRIWYAVLNEFLTSLGFFRCKKE
HCLYLRRWDIKGIEHILIICVYVDDLTIAGSHLSSISDLKAKLSAKFTMKDLGELHHLLKMEIKRDSQKKTLRISQQKYI
NDLLVKYQMRDCSTEPTPxAKSVILEKEKDMNPEQIAAQPFDYRGLVGSLMYLVRGTRPDIANAVRELSKYLSSYKRTNW
RSAQRVLKYLKGTSKYGIEYNGNSTTKLELYTDASFANASEGRKSITGYVSILAGACISWKSIKQDCISIHTAESEIEAA
SEGVREAMWLRLLLKELGYGQVLPTQCWCDNTAAISIIKDPCSHSSTKHIDISHLYARDKHEDKSIIVNYCSTNDMVADA
LTKPLSQTQFEKLRSMMGIKELG
>Copia-35_GM#LTR/Copia 77-4054  [Glycine max]
MSAMDMIKSLSSKPEKFTGENFFCWQQQMKFWLTELDLYSVISKREIKTSTSSTDIVQTDATIKHDVSDKDILCHGRILS
ALADNIYKIFCHTKTSVELWEALELKYGSAEKGLSRYSCEKMIEFQMIDGKSISDQIHEFENIVYDMKLKGIVLPDIMLV
AFMISKLPPSWTDFARSLKHKHESFTFDDLLVCLRIEDKHRSSQKHLQKSDSHSKAYLVESSSKPFSKSFKRHGFNKNKF
GRKPSFSKNKNNAFNNNNKPKDKNSGNEIFCFVCGRANHLAKNCFQRHRQPTSFPKPQANVVTTGAASDSPSDRYHVTSP
ELNCVFNSNDWFIDSGANVHVCADKKLFSLYQESSTRTVSMGNGSMAHVLGEGQVKLELSSGNFIVLDGVYHISDIRKNL
ISTSLLVQQGYKVVFESNRVVITRHGNFIGKGYICDGLFKLSLMSHSINKISNISSFVANVECSNMWHARLGHVNLNSIK
RMMSLNLIPKASIDLKQKCETCIQAKQPRKSFTTCIERETNLLELVHSDVCDSNDVLTRGGKRYFITFIDDFSKYCYVYL
VNHKSELFDKFKVYKTEVENQLERKIKILRSDRGGEYTSLDMSNFCEMHGIIHEVTPPYAPQSNGIAERKNRTLLDMVNA
MLVSSGLPSNMWGEALYSACHILNRVPYKNFEKTPYELWRKREPNLKYLKVWGCLAKVNIPINKKRKIGPKTVDCVFVGY
SMHSTTYRFLVVNSEVSEISNGTIMESRDATFFENIFPLKNKLSKSVCDTSCSNLSSCSNTNKDVVFEPRRSKRSKKVKD
FGSEFCSFLLEDDPKTYGEAMRSIDAPFWKEAINDEMSSLKNNKTWFLTDLPPGCKSIGCKWVFRKKLRTDGSIEKFKAR
LVVIGCKQIEGVDFFDTYSPVSKVTTIRVLIALACVFNLEIHQMDVKTAFLNGELEEEIYMSQPEGFVEXGKEKKVCKLV
KSLYGLKQAPKQWHEKFDQVVLSYGFQINNTDKCVYVKQFDDNGCVILCLYVDDILIFGSNMQFINDVKSFLSRNFDMKD
LGPVDVILGIKLIKKNDGMILTQSHYVEKLLKKFNYFDVKPVSTPYDSSIKLKKNLGKGISSHKYSQIIGSLLHLTNFSR
PDIAYAVGRLGRYTNNPDHSHWIALERVFRYLKGTINYGIHYTCFPAVIEGFSDANWISDSDETKSTSGYVFTLAGGAVS
WKSAKQTIISRSTMEAEIIALDTATSEAEFLKNLLCDLPLLNKPIPPIPMHCDSQVAISKVTSKNFNEKRRHLRVRHKSI
RNLISHGVISLDFVRSENNIADPLTKGLTRQQVLESSRGMGLKPII
>Copia-35_BD#LTR/Copia 73-4324 via tfasty with Copia-46_ZM, 1 frameshift and 6 stopcodons. [Brachypodium distachyon]
MSTSSSIPAPVASLGAPPSEKLTRDNFLLWKVQVMPALRGAQMTGLLDETEEAPPKKISVTKGDETVEEKNPAYASWLVR
DQQVLGYLLNSLSKEILTRMVGLEHSAEVWGTIEKMFSSQSRSRITNLRHALANTKKGNLTASQYIAKMKGFANELVSAG
RSIEDDELVEYIIAGLEQDYNPLVTSLNSIDKLSVSDLYAQLAAYDTRQETFSANGGGKGQFQSSANSASRGRGGHGRGR
GRGRGNDRGGRNSNQGRGRGGPPTAPRRDITCQICGKVGHPAKECWYRYEEDDYSNEREANIASYGVDTNWYVDTGATDH
ITGELDRLHVREKYKGNDQVHTASGAGMAIEHIGHSIVPTPGRNLYLRNILHVPEASKNLLSVNKLTADNNAFYEFHPTF
FSIKDQATRRTILRGPSRRGLYPLVPASFSSSSKQVHVASKVSEIKWHSRLGHPSFSVVQQVLQNNNISFVKDHNNDSVC
DACQKAKSHQLPYPVSTSVSVEPLQLIFSDVRGPATPSIGRHTYYVSFIDDFSKFTWIYLIKKKSDVYQVFHNFKNYVER
KFARKIVTMQTDWGGExKLNALFQTLGISHHVSCPHAHQQNGAAxRKHRHIGEVDYLFCHASMPLKFWDEAFLTATYLIN
ILPTKVINFETPAERLLSAKADYTALRVFGCACWPNLWPYNNRKLAFRSTRCVFLGYSPLHKSVKCLDVSTGRVYIFRDV
VFDESVFPFATLHPNAGALLRKEILLLPENLLLNLASSQGAQxVLIICQICLLLIVCRSIMKKVEKTRAKMMQIQVKTVK
PLRTRSTRMIWSNLPRIARHSQxKTRPLRPPYPHLPRLRAQVEADKSQEDLADILHRAARQQNSSDGSTGSSVPDSPTPS
PPVNRRTRLQHGKRFPKIWRDGMIPYGMLCSTGEPSNLEDALDDKKWKTAMDEEYTALIKNKTWHLVPANQGKNIIDCKW
VYMIKRKSDGTIDRYKARLVAKGFKQRYGLDTFSPVVKAATIRIVLAIAVSRGWNLRQLDVQNAFLHGILKEEVYMRQPP
GYENMHAPSHICKLDKALYGLKxAPRACYSKLSSKLQDLGFKSSKADTSLFIYNKSGITIYVLIYVDDIMVTSSSSKAIP
TLLQDLRSHFALKDLRDLHYFLGIEIKRVNDGLILCQEKYARELLKKVGTKDCKPASTPLSTTEKLSAHEGELLSIEDGT
KYRNMAGALQYLTLTRPDISFSVNKVCQFLHAPTNDHLTAVKRILRYVKGTSGVGITFSKSNSTLISAFSDADWAGCIDG
RRSAGGFAIFLGPNLISWSAKKQATVSKSSTEDEYKALANATTETIWVESLLDELGIKKSQTPCLWCDNLGATYLSANPV
FHARTKHIEIDYHFVRERVANKKLEIKFISSQDQVADGFTKSLLTxSLREFQRNLNL
>Copia-33_Pru#LTR/Copia 140-4480 via tfasty with Copia-69_Mad, 86.5% SW:5126, 2 stopcodons. [Prunus persica]
MAEDNPFGSEAKSFTVPPSSFPEAEVNPNQRLCSVLLNEFNYLPWSRAVTLALGGRSKLGFVNGTIEAPEDSSPEYEAWL
CKDQLVMSWPLNSMDPKLSEIFSFSESSLSLWKAVKDMYGNQNNAARVFQLKRNLASLQQGDKSFVHHLGCMKNMWNELN
MYRPHTIDAAILLKRSEEDKIFHLLASLGSEYEDLRSHILMNPELPSFASVCTTIQREEVRRKVMNVDIKSSVSEARAFV
TNHKSSGDRVYKGKRPDLKCLHCNNIGHLIDRCWILHPELKPKFENKPSRDYKGSQTRSHTNKNHATAAATSIDGLTNFT
ANPANLINEFSAYLQTKKGSTGEVLTAGNQTALLGQFAGFLAESNRVPQGDIPGIMCALSTALNVSHSHDFWIIDSGATD
HMTNQYSKLYNFESYTTPSLVSIANGRGVPVLGRGKVKLISDNVESTALYVPSFPFQLLSVGRITNSLNCRAIFSPHNVV
FQDLATKKLIGEGHYLNGLYYFSKNLNVPKGFQVSSNLEHxLWHQRLAHPSEFVLSTLFPRLCKSALVCEICHLSKFTRL
PFNSSISRASKLFEMVHSDVWGPAPLESFDGYRYYVTFVDDFSRVTWLYLIKFKSEVMDAFKNFHNLVMNHFSSQIHILR
SDNGTEYTSKNMTNYLSTHGIIHQTSCVGTPQQNGIAERKNRDLLEKTRALMLQMNVPKRFWSxGVLAATYLINRLPSRI
LDSKSPYEVMQNKKINLSHLRIFGCTCYAHIQSHHRDKLDPKAIKCVFMGYSSTQKGYKCYNPCSRKLFVSRDVRFDEIK
SYFNKPSDQNRQGEHLLDFFPLPNPAETSDCVHSVPHNSDSHATNIDNVFIGNETEASEAQGVPHDNDTSSIEESGAEPT
VIPSQPRRNPTRDRHPPSRLQDYVTFNVRYPIHKFVNYSKVSHSHAAFLSKLSNESEPRNFQEANLQDVWRLAMEEELKA
LDENKTWSVVQLPKGKKVVGSRWIYKTKFNSDGSIERHKARLVARGFTQTFGVNYKETFAPVAKMSTVRVLLSVAVNHEW
PLYQMDVKNAFLHGDLEEEVYMQLPPGHPQAQNSSMVCKLHKSIYGLKQSPRAWYAKLSSVLEKFGFKRSHADSSLFVRI
GSVGKLVVLIYVDDIIITGDNIDEINTLKHSLHQKFAIKDLGVLKYFLGIEMATSPKGLFLSQRKYVIDLLQEVKMIDCK
PARTPLDSKLKLDLEGEPLSDISYYQRLVGKLIYLTITRPDITYAVSLVSQFMHAPTEAHFNVVKRILRYLKGSIGRGII
MKNNGHTQIMAYTDVDWAGNAIDRKSTTGYCTFVGGNIVTWKSKKQNVIARSSAEAEYRAMASTACELIWLKSLISDLGF
LSNKPMSLFCDNQAAMHIASNPVFHERTKHIEVDCHYVREQVQSKVIQTTFTRSHDQLADVFTKSLASTQFQRLLSKLES
INPLDPA
>Copia-32_BD#LTR/Copia 53-4542 via tfasty with Copia1_ZM, 1 frameshift. [Brachypodium distachyon]
MTSPSTAAATAQSQLSGTLGAKTGGSVSIGSMATGPISVPSIAQLVTVKLSRDTHLLWKAQIVPILRGHQLLGYVDGEIE
TPPKHVPASTADDAPSVVNPAYTARYTQDQLILSAILSTLSPEVLSRVLGLTSSGTVWAALERMFASQSRTRVAQIRRQL
AKLQKKDLSMADYFARAKALGDQLAAAGRPQSDEEMIVFILTGLDSSYDAFVTSINLQVDDMTLDEFYSHLLDHESFREA
SDANYQITANMAGRGSSGGNRGQGRGADGRGNKGKQQQSSGNRGQNQGNAGGGPSGGGGNRKNNAPRVQCQLCGKYGHVA
FKCYQRFDHNFQPEDQRFINNVSSGHQQGFDGAWYTDSGATDHITGDLDKLHVQEQYGGRDQVHTASGAGMAITHVGQSY
IHTPHKPLLLQDVLHVPHTHKNLLSVHRLTRDNNVFIEFHPYYFLIKERGSKKVLARGPCERGLYPISTGHRSFSKFVFS
ANKPSLARWHSRLGHPSSVIVDRVINQFDLPCVREQNKASVCDACQQGKSHQLPFPRSHRVSSAPLALVFSDVWGPACPS
SGGFKFYVSFIDDFSKFTWLFCLRHKSKVEKVFLQFQAHVERLLNRKILKMQTDWGGEYQKIHPFFRNIGIEHHVSCPHT
HQQNGSAERKHRHLVETGITLLAQASMPLRFWDEAFHTACFLINRMPSRTIQMQSPLERLFGVKPDYSFLKTYGCACWPC
LRPYNDRKLQFRSKRCVFLEYSSLHKGYKCLHISSGRIYISRDVVFDEQVFPYSDISPPTTPDILHNQLLLSPTSFPSSS
FQPEAVEHGVDDHVGSGQTGFPNVVQFDPFFPSMQTTGTAAPLINDATPDESMRMGHAGVSSSDHMDDDTAPETGTPSPA
PAPDAPDSASATASPSHGAHADPAASDSAAAPVESSTPPAGSRSGPSADSLRSESPVFSPAATAAPDAPPPRCALAAGTI
PRRARIRTDGTIPYGLPRRRANIAISEPHDHIEAASDTNWRRAMDEEHQALLDNRTWHLVPRPAHCNLIDSKWVFKLKYR
SDGSIDRYKARLVAKGFKQRYGVDYEETFSPVIKHTTIRLILSIAVSQDWCLRQLDVKNAFLHGVLEEDVFMRQPPGYED
PTLPHFVCKLDKSLYGLKQSPRAWYSQLISKLQELGFRPSQADTSLFVYQQGGVTIFMLIYVDDIIIASLCSAAAQRLVH
DLSAAFALKDLGSLDYFLGIEVSRSKNAIMLRQTKYTTDLLARVGMKDCKPASTPMAVAEKLSRDEGVKLPPNDATRYRS
LVGALQYLTLTRPDISFAVNKVCQYLQAPTDLHLTAAKRILRYVKGTASTGLKLSKSPSSLLSGFSDADWAGSVDDRRST
RGFVVFFGSNPVSWGARKQATVSRSSTEAEYKALANATAELIWFQSLLGELGVRQERAPVLWCDNLGATYLSANPVFHAR
TKHIEVDYHFVRERVARKALEIRFVSTNDQVADGLTKPVGTQQLRQFCYHLNLVGSD
>Copia-31_GM#LTR/Copia 43-4444 via tfasty with Copia-106_BRa, 76.5% SW:3785, 1 frameshift. [Glycine max]
MTNMAEKKDDGNKINDESNKDESGSHLKKQISPYDLYSSDNPGNIITQVQLKGENYDEWARAIRGSLRARRKFRFVDGSI
KKPDDAAPEIDDWWTVNSMIVSWIFNTIEPKLRSTITYRENAQELWDDIKQRFSISNGPRIQQLKSELANCKQNGDSIVT
YFGRLKKLWDELNDFDQIPMCTCNGCKCGISAALNKKREEEKLHQFLMDLDDTQFRTVRSNVLSLDPLPNLNRAYQMVVQ
EERVGVMTRGKEERGDPIAFAVKSGRTSSWEKKPNTGSEKPCSHCKRDGHDIDSCFQLVGYPDWWGDRPRSVGRALGRGK
HVHRPMSGALKGRGNNAKVNMTQVVDDTEVMKYEDDQVLPGLSSKQWNALLNAINTQKGGTSTRLTGENSWIIDTGASHH
MTSTLACMNDVRDIEPCPVGMPNGTRTYATKEGMVTVGDKLMLKHVLFVPNLNCNLISISQLLHDADYIVHFTKTMCVIQ
DRTLRMMIGAGEQSEGLYVLSVVTPVRAYQANGIRFCELWHRRMGHPSSKITSMLPDVIGKNIDSRLKTCDVCFRAKQIK
ESFSLSENNAKNCFDLIHCDLWGPYRTHASCGAAYFLTIVDDCSRALWVYLLKTKDEVPHIIKQFFAMIHRQHNKQIKVL
RSDNGTEFRGLKSYFQEKGVLHQTSIRYTPQQNGRVERKHRHILNVARALRFQANLPLKFWGERILTAAYLINRTPSALL
DGKTPYEVLFDAKPAYTQIRTFGCLCYALNENRGRDKFDSRSRKCIFVGYPYGKKGWEMYDIETEEYFVSRNVNFVEDIF
PFSSNDKVSETHVDEWGWPLDPIDECEERNETRNVVTTNDLGAVVVGNDVQDIENHEEVHVMEQQTETIEDVDQGERLDS
QQSIRSDELLGRGHRIKNPSTRLKDHVTHTATVSLSTSSPLHSKSSGTRYPIAHFINCDKFSVQHRAFLAAITAGYEPNS
FAEAVKDEKWRNAMKEEIQALEDNGTWTTEDLPLGKKAIGCKWIYKIKYNSDGSIERHKARLVIHGNRQVEGVDYNETFA
PTAKMVTVRTFLAIAAAKNFQLHQMDVRNAFLHGDLEEEVYMKLPPGFEKKSPGKVCRLRKSLYGLKQAPRCWFAKLSDA
LKTYGFEQSYSDYSLFMLRRRNTELYVLVYVDDIVISGNQSDAIHKFRDYLGHCFHMKDLGKLKYFLGIEVARNATGIFL
SQRKYALDLISDCGLLGAKPATIPIEQNHQLALVEGEGIKDPTGYRSLIGRLIYLTITHPELSYCVHILAQFMQAPKIEH
WNAALRVVRYLKGNPGQGILLRTDCDLRLYGYCDADWAGCPLTRRSLTAYFVMLGSSPISWKTKKQTTVSRSSAEAEYRS
MAAATCELKWLKGLLSSLGVEHTDPMQLYCDSQSALHIANNPVLHEHTKHIEVDCHFVRDEIVKGSIQPLYVHTSKQLAD
ILTKALGKRQFDSLLSKLGVLHLHAPT
>Copia-32_MLP#LTR/Copia 102-5271 via tfasty with Copia-75_MLP, 60.3% SW:2190, 1 frameshift. [Melampsora larici-populina]
SLSLSMTKGDDTKPTEPPVTYNMSTSNSGTTNFSTSAISSIPKLTMGNLFAWKTELKIYLKMNGLYEFIEQEIKRPSDFQ
ERSKYDMRQAATLYAIRNTIDSANLASIESLEDPKLAFETLVSQHGSDNGIVTANTLTELFSLKYDHSIGITNYIAKIQD
LHSKIRDLTAGDKDLQLSDRLFAILLVNSLPRNEFGLIIQHFLSNIKTITTSDVCARLRLEASSTLGNEEKSKEVYHIKS
RKPARTDNRRVGKLPKDLCHIHPNSKHTNEQCHTQKKNNTKDSSSLSTEEMARRYQAMMANSNQTTPTNLNSVSAHVAIE
NPSSNDFITYAAYNASTKTTKNTEFLIDSGANTHITSQANLLSNIHTIPNVKISGIGGHDKQVSARLAGTAYIQGTTISG
EPRLIAIEDVLLIPNAGVNIISVSSMIKDGATLSSSKSALMLKNSTSDYIITGKEIDGLFITQARRSPVLFAASASIPAD
VWHRQYGHLNYRSLSKVSPSPPRKLDCESCILSKAHRLPFSSHFPKSDTPLFRIHSDVLGPMPTTSIGGGKYIVSFIDDA
TRYNCIKIMRTKSQVYTSFVQYVTESESTHNKRVAILKSDRGGEYTSNEFSKYLSQQGIAFERAPAKTPEQNSVSERFNR
SLLERTRSVMVDSNIPNFLWGEIIMSISFLLNVSPNAAIDMETPLNLWNADISGAHKANNDFLRVLGCAAYPLLKSTEYN
KLSAKSRACVLVGYEQGARAYRLWDISNKKIIVSRNVVFNERLFPFKNKIPIQTNEINTDVITFSPTPAQNQSTAPEIDV
NHLPTENLTSTSSNSAVNDTTVLPVIPNSTVQQQTLPPQSPPPNPPQNHNLPFHISGPRDNNTISINSSPFLSPQRLSPI
SPNFSEFSLSEYPTNLSQKPEEIIEFTPKQLIPLSKSIHAPKEYTPAPQEIKIISETDTISELEKQKQKENKIKTQKDHE
LEIEKQKQIRHQYELTLKLEKEKEKEKEKEREEQKQKETEKAKLLTYQKELNIRLEKRKQNQIKQQQELEEKLEKAKQKQ
IAHEKELQLTLEKEKEKEREKEKEREKEKEKEKENNKLIIRIKRPKNNNNNIALNKEEQSKLTKESDNCTNISNTTPEEQ
IEMNNNETNPVENPVLPVTNKQTPKIIPHPPSQRPARDRKPPLRYGNLTIYAAKRSADCPSYAEAMRGNERENWIKAMES
EFNSLTSHNVGELVDAPSEANIIGGMWRLKRKRDEHGNIIKYKARWVALGNHQIWGVDYDKTFASVVQSDTMNMLFSLCA
SEDWEMEQFDICTAFLNGKMKLPVYTRQVQGFYNPKSPTKVWLLKQSIYGTKQAHREFNSDLEEKLRSIGFTPYKDDNSL
FTFRRNEEIIHIPMFVDDGLVFSNSKSLIKETREKLEQLYKLVWTTNPTLHLGVKITRDRTNRTIHLSQEHYLKSVLDRF
DMTHCNTTSTPFPTSMELSPGTDEEIEDAAHLPYQQAIGCLNWAAVHTRPDIQYAVSTLARYSSKYTYRHWQVVKHLLRY
IQGTLDRGIVFKKHKTPSTELRAYADADYAACTTTRRSTTGYVFTLGGSLISWKSRRQPTVALSTTEAEYMALGDCAKHC
LWFRRMISHLTQTPIPTSPISLPPLSIFNDNNGAVFLSQESATNSRSKHIDIRHHFIRDLIFSHQISTHMIDTKLMPADF
LTKNAPKEMLNRCRFLIGNVNTKEIHLISTNTLPKPAKVSSKG
>Copia-33_PIT#LTR/Copia 36-4239 via tfasty with Copia-12_PR, 73.3% SW:3116, 3 frameshifts. [Phytophthora infestans]
MKKPDDLLRSDNYFHWEFNMRMTFARKGLGDHLTVVKQEHEMTEAWRLSDQNALALIAQRVSLKHQTRIRTAVTAKQAWD
TLKEYYSRSTLQNRVTMTRRLHEFAMEPGQTMATHLDRFNELETALEAVGDGIDDARQLVVLLGSLPTEYSTIVSNFENT
RSVTLIEVKEKLHKEHDKQATQESEEVAFKARPNSRTKSKVQPRAIKKFGGPSKNKFGGKCFACGKRGHKEADCRSSHQN
GGDETLFMVHQGGGEGWLIDSGASSHMSPKKEDFVTYRPLKKSIRVTVADGAVMEAVGIENIHIRGYQDQRIVVQNALHI
PKLDRRLLSVPRITSRSLVVKSGATFCRFMRGNKTILKVPKVGKAYDLDVEPERAAVVKHKPVSTQWELWHARMGHASKA
RILSTLKATAGLPSITARGGELCSGCMKGKHTVSSFPGSTGAVKTSRVLELVHSDLMGPMKTASSGGSKYILLFVDDYSR
YIVGFFLKKKSEVANCFRKYKALVENRFGHQIKAVRSDNGTEYVNKTFDGICRASDIVHQLTTPYTPQQNGLAERTNRAV
MEMARSMLHHKRVSYKWWAEAVNTAIYLINRFVDNVNPHVTPYEICHGKRPSLDHLRVFGFIGYAHVHKEKRTKLDAKSY
KCMLIGYAEQAKAYRVVDLETGKVKLSRSLALDEREVDGVYAEAPRDRPIEYIVWKDVDDELMQPELNAGSIDVDMDPAE
AEGVTDNVITMEDVQEAPAQVAALPVPDGIPALPSTSPAAPGNYQLQNLLNASCYAFHPTESRRVSNQYTTSIVSYSGSG
NRSDYRARDSVVANESDSGTMVVYDGSHDNELETGDRPSKRSRTETALIAGEVAFAADVPCTFDEAITGPDQKKWQEAIA
AELNPLERNNNRIVIPRTSTMKPVGWKWVFALKRDAAGKIIRYKARLVARGFTQRQGVDFHDTYSPVASMNGIRIFPSVC
CQKQLLIFQFDVDTAFLYGVLKEKVFMRAPPRVKVPSGSVLKLEKSIYGLKQASQVWHNTIHSALIEFGFATSCADPCIS
CTGTGDDDDDNAGSLVIVCLYVDDLLIASKKRQLVENVCNFLQERFRLKELEIAKFVLGIELNHNVEQRVLCLSQKRYIM
DVVSRFKQDGAKTVKVVLHFKTRLARTCEASLKLSRADSPSTDEELAKMRRVPYRALMGSLLYIAVCTRPDIAYATTHLS
RFLDNPGRKHWKAAIRILRYLKTTSDHGLRFDASISPGKRRAYTDADWVSNLDDRRSVSGVLLLLNGGPVVYKAKYQRSV
ALSSAEAEYMALSLCAQEVMWARTLLQELDCEQVGATIILEDNQGAIALSKNVGYQTRTKHIDLRHHYNRERVQEKRVTV
AYVETKLQLADILTKPVGTAQFQFLRSSTGIIPVVKRDVSG
>Copia-32_ST#LTR/Copia 87-4499 via tfasty with Copia-3_ST, 77.4% SW:3972, 3 frameshifts and 6 stopcodons. [Solanum tuberosum]
MATKIDHNHPLYLSTSDIPGVVQTGIQLTGMKNYSLWSRAMQLTLLTKNKMGFIDGSLRRDDFKEELEKKQWDxCNAMVL
SWLMNNVSIVSGILFRSNAALVWNDLKERFDKVNMSSIFHFHKAIVTHVQGVSPVSVYYSKLKDLWDEYDSILPPPSCDC
AKSVDYTDSMLRQKLLxFLMGLNDNYGQARSQILMINPSPSVNQCYAMIVQDESQRSLSGSGQTIDPTALFTHRPGGSGF
GSQGSGNGSGNGNSHRFHKGGNMYCDLCNMKGHIRANSNKLKHCTHCNMQGHTKDTCYQLIGYLADYKGKKKANIVTALS
LPQMQHNNFNNNLNYPMQYTGDGIGHFVSPMQFTGNTIGHSSGSIAGNFGLRSVPQFTTSxYYNIIHMMKKPMLSESSAN
VAGIFAGSSHCNSTTHSSAWIVDSGATDYMAYQFHHPGKVQLPTGDSAVVTHSGSSQLTxGDVVKNVLCVPNFQFNLLSV
SKLTKELNCYVIFFPDFFIIQDLFTGKVKEIGEEINGLYITRPHQHHDKSKKALAAVKGCEEIETWHKRLGHIPMSVLRK
IKMFDSPQKLVLPSCDVCPLARQVRLPFPISQSKSDNCFNLIHLDVWGPYKAATHNKMRYFLTVVDDHSRWTWIFLMHLK
SDVSTILQNFILMIDTQFGQKIKTFRSDNGTEFFNAQCDGLFKSHGIVHQSSCPHTPQQNDVVERRHIHILETPRAFRFQ
GHLPIQFWGECVLSDVHIINRIPSSVLHNKSPFELMYKRSPDLSYMRVIGCLCHATNLVNTDKFGPRAIxSVLMGNGSTQ
KGYKLYDLEHQIFFVSRDVVFNEAVLPFQSPTLADPHDTTIFLASPTCSSHTEDVDAVQPATITSEEIIQVASPPSAVFY
DHLLPSPERRRSHRPSKPPLWQKDFITTSTGRSNHCLYPISDNIDYNCLSSTYQCYIASSSVETEPQFYYQTANDCRWVH
AIKEEIQALEDNKTWEVVSLPKGKKAIGCKWVYKIKYKASGEIERFKARLVAKGYNKKEGLDYQETFSPVVKMVTLRTVL
TLAVSKGWDIQQMDVYNAFLQGDLIEEVYMQLPQGFQHDKKGVPKVCRLLKSLYGLKQASRQWNVKLTTALLVAGFQQSH
LDYLLMIKRTANGIVIVLIYVDDLLITGSNLQLIDDAKQVLKANFKIKDLGTLRYFLGIEFARNAGGMLMHQQKYALELF
SDLGLGGSKPSVIPIEMHLKLATHEFDLHVGSSGADSLLADPTEYQRVVGRLLYLTITRPDISFAVQHLSQFMHAPKASH
MEATVRVVKYVKQAPGLGLYMAVQTAATLQAYCDADWGSCINTRKSITSYMIQFGSALLSRKSKKxSTISRSSAEAEYRS
LASTVAELVWLTSLFKELDMLLSLPISLYCDSKAAIQIAANHVFHERTKHIDIDCHFFREKVQAGLVMIHYLPTQEQPAD
ILTKGLSSARHSYLVSKLGLKNIFIPPSLNGG
>Copia-9_TMe#LTR/Copia 90-4574 via tfasty with Copia-8_TMe, 61.1% SW:1717, 1 stopcodon. [Tuber melanosporum]
MSESSLESSGMNLKLNVELLNDTNYERWARNMMILIAGKGLTFIVDGTEKYPSGVGSLALDAGSGGTTGSTSLTKEQLKW
KSRDVMAKALLASHMEPHFRRKYWNIETSKKMWTSLRKDQKDSGAEHFHRINDDIQSLKVGNFPTVIAFNDKFKSLLCDL
ALCDSEGQGISDIEATYIILRALPMDDEAWRTFRHIHSNASRLHQLIDEMVKHNSRLKSERKNGVGLSGGEVMYSHAGNG
QKSRNENPRSSNTSRGNYSSERTGRDMSIICYNCGKKGHRKKECWSKGGAGNSYSNNGGQRGRYRNVGRRGTARNGTGNG
DQSASAIWSFDGNRKRDTVLSLGQPELDEEWWIDSGCSNYVSGVRSYFTEYRSYALGERTVNVADRRNLVCGGIGTVEVT
VILPQGKSRKVAIENVIHIPGCRNLLSLGQLMERGLEVKIDPGMGCCLYQNSVLMGTARMRNRLFLLATQSTKSHKKKxC
HSEHVFFEAETGYNQKIENEELWHRRLGHISYNSIRSMKEVVVGMEVPVESNMRTERKDRCEDCVRGSLAHKPFLHPQHT
ATKVLECIHSDVCGPVETLSLGKRRYFVHFTDEYTRYTCGYFMHQKSDTFNYFLEFKAEAEKATGEKIQSLRSDGGGEYQ
GKKFLDYLRMNGIRSECTTPYTPQENGLAERQNRTLMNKVLSMMSSVAAPKAFWVLACETAIYLRNRSPSSPLKGKTPYE
LWFGRIPDISHLRVWGCKVMYGIPKEHWKKLDYKARNGIFVGYCLTSKHYKIYDPESCRLITSRDVVFYEDLGHWKSAVE
ISAEKDKNGDMKHAEQYGLGELFGSGIESDDEDPAPVQADQEELGIIHVRPPAQDNEEPVRRYIGRTSKSNTDRARVRSS
RSQLTRELKALPSSLGRAWDLENEEPEEERNERITGKADFLGMVEAGPQSIEEALRLPEKDLWMKAVEEEIGNLERLKTW
LVVDKVPIGRKAITSRLVLQRKLGSDGGHERYKARLVAHGFKQKPGIDFLHTYAPLVSLSTVRLVLSFAAAHDYEIQQLD
VVAAFLESDIKEELYVQLPLGFEVVRDGERQVTGRVAYTGRQEPVCVRILKSLYGLRQSALNWYGKLDSELVRNGFRKSE
WEAGVYYQGEQVLLVWVDDILLIGGRDAIEATRKILQNTFTVRDMGPIGHFLGMQITRNTRTRVITLDQSGYILQLLRRF
QMDAAKGVSTPLDPGMSLLKRNGKMTTMGEEVWTAGKGESLLSDRDGENKADQKEYQEIVGSLNYAAIATRPDISFAVGV
LGRYASDPAQRHMMMARCVMRYLARTVGYRLQLGMRGGVDNPYGTIALYTDSDFASDPNSMKSTTGMVIRDRYGSIVAWQ
LKKQSITVKSTADAEYIATATSLDEGIWINKLDHELHQSLPVNHHETSWLPMKHEPLPVYSDNQANIKNANMSEYQTPSK
TVGVKFHWIKDQVRDSTISITYVPTTEMIADGFTKIYGKVKQAELVEKLGLTSED
>Copia-9_Mad#LTR/Copia 196-4750 via tfasty with Copia-2_Mad, 2 frameshifts and 2 stopcodons. [Malus x domestica]
MVTAAQLQIVQSPITGLLSTVSTSVTVKLDDSNYLTWSFQVRLLLESHGIMGFIDGSRKCPPRFNEDSNTEGIETDDYLV
WKMHDRALMQLLIATLSTTAISCIIGCQSSAEMWLNLTERFSAVTKATIFQMKTELQNIKKGSESVSVYLQKIKDARDHL
AAAGVLFDDEDIIILALKxLPSDFNTIVCVIRGRENGISLKDFRSQLLAEEAIINQSFDSSPGLSFGSAMAAGISSDKGK
ALALDQDQPNTSSDHSFKYNGGPSSASHSPGSAPSSGSYNNFTGGYHNYGKGSSFRGRGKGRFQYNSHPRFSNGNPGILG
TSKPYQSYCPDHPSEIPTCQICNKKGHVAADCFQRHNNTATGPTPIQCQIxWKYGHSALQCYHKSNFAYQGRPPTPNLTA
MHANHQPSAPTEHFWIADTGATSHMTFDLANLDLSTPYQVSDTITTASGAGLHISNIGTSKLVVPHHSLTLQNVLHVPKL
SQHLLSVYQLCKDNKCQFICDDVSFWVQDKSTGKILLQGLCKAGYYPIPFITSHKQSSSSSASHSCFLTKPVHSRIWHKR
LGHTSNAITSAILHQSQVLASLDPCSSPCTPCLEGKFTKLPFNVPVLKSVHPLEIIHSDVWGPAPLLSYEGFRYYVTFID
DCTRYTWIFPLRNKTEVFATFVQFHAYLSTQFSAVVKIFQSDGGGEYTSTKFQQFLAHHGILHHKSCPYTPEQNGLAERK
HKHIVETAITLLQTAHLPNQFWVRACVTASYLINRIPCALLHMQSPFQMLYHTVHDIKHLRVFVCACFPILKPYNTSKFQ
PKTATCVFLGYASQYKGYICLDVITGKIYVSRHVLFDETCFPYLNPICASDQMFPASSQSHSSHSQMHPSQLTPIITLSN
QVSSPSSHSSSSQTTEYLPVHSSSASESFSASRASDSLDTVASRASESISLPSHEYTAVHTPRDLSPSPMILSSAGTQPP
IPVDPDFHPESLSVVLPIPLNVHPMQTRSKNGVFKPKVFLATVTAEPKSFKHAAPIPEWQNAMKEEIAALHSQKTWTLVP
LPPDKNLVGCKMIYKIKKHADGSVARYKARLIAQGYSQEEGVDYLETFSPVVKPTTIRLIFALAAQFKWTFRQLDVKNAF
LHGILQEEVYMAQPPGFESPTQPSNYVCKLHKSLYGLKQAPRGWNERFTSFLPSLGFQVSPADPSLFVQQSTQGTVLLLL
YVDDVIVTGSSSHLINKVIIAFTAEFEMTDLGLLHYFLGLHISYTSEGLFVSQAKYIHELVDKVDLQDSKPCATPCLPYH
RLLKDDGQPYPRPEQYRSVVGALQYLTFTRPDIAFAVNQACQFMHNPMISHVIAVKRIIRYLKGTSTYGIHFKPGPIHLQ
SYSDADWAGDPNDRRSTSGFVVFLGSNPILWASKKQHTVSRSSTEAEYRALAITATELAWIRQLLCDMHVPVYSSPMIFC
DNVFAIALSTNPVFHAKSKHIEIDYHFVRERVTRGDLQVQHVSSSDQYADILTKGLSAPLFQHHCSNLMLSALEHQLEG
>Copia-10_CP#LTR/Copia 567-4580  [Carica papaya]
MTTFDGSNFAEWYERVQFSLGLLDLDLALIIEKPPEATDDSTLEQKEQFKAWTRSNKLSLMFMRMTIATNIKTSLPQTEI
ASEFLKSVEERFKCADKSLAGTLMAELTTMKYDGQKGIQQHILNMAEKAAKLKALGMNMDESFLVQFVLNSLPSQFAPFK
IHYNTNNEQWNMNELTSKCIQEEMRLKQDGHNFALAVTHGAMKNKGKSRKVKNIPPKKQSRPGENNQSHDGKFTLSCYFC
GKKGHVKKECNKRKAWFEKRGMNLSFVCYESNLAEVPSNTWWIDSGATTHVTNLMQGFLTTRKPKESEKFLYMGNRLKVE
VVAVGTYRLLLETGHQMDLLNTFYVPSISRNLISLSKLDVVGYSVYFGCGKVSLVFNSMTVGSGILYDGLYKICLNHEFA
QALVTLHSNIGSKRGLINENSSFLWHKRLGHISRERIERLVNDEILQNLDFTDFQVCIDCIKGKQTKHTKKGATRSNELL
EIIHTDICGPLSIPCFTGERYFITFIDDLSRYGYVYLMHDKSQAIDIFKVYITEVERQLDKKVKVVRSDRGGEFYGRYDE
SGQNPGPFAKFLEKHGIRAQYTMPGTPQQNGVAERRNRTLMEMVRSMMSYSSVPISLWGEALKTAMYILNRVPSKAISAT
PFELWTGRKPSLRHLHIWGCPAEARIFNPHEKKLDSRTISGYFIGYPDKSKGYRFYCPNHGTRIVETGNARFLENGEISG
SEEPRKVDLEEIRVDIPPPFLPQETTLAHPSQQVTENELHNGNGSLPQEDVVIENVIEQPQSIPLRRSQRERKSAISDDY
VVYLQESDFDIGIRTYPVTFSQAMESDDSNKWIEAMKEELKSMDHNDVWDLVELPDNCKSVGCKWVFKTKRDAKGSIERF
KARLVAKGFTQKEGIDYRDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMDQPEGFAKKGKEHLVC
KLKKSIYGLKQASRQWYIKFNDTITSFGFKKNAVDQCIYMKISGSKFIFLILYVDDILLASSDLGLLYETKKYLSKNFQM
VDMGEATYVIGIEIFRDRSRGLLGLSQKGYINRVLERFNMQLCSASVAPILKGDKLSKSQCPRNDLERERMKNIPYASAV
GSLMYAQTCTRPDISYVVGMLGRYQSDPGIEHWKAAKKVMRYLQGTKDYMLTYKRSEQLEVIGYSDSDYGGCRDSLKSTS
GFVFMLANGAISWKSVKQSITASSTMEAEFIACFEASSHALWLQNFISGLGVVDSIAKPLRIFCDNTAAIFFSKNDKYSS
GSKHMDLKYLVVRERVQKQQVSIENISTTLMIVDPLTKGLPPKTYAEHVVRLGLLSNP
>Copia-12_PR#LTR/Copia 45-4118  [Phytophthora ramorum]
MTTTSAKKAEVVLGSDNYFHWEFAMRMTLARKGLLAHVQLVKDPSEMTDAWLLNDMKALGLIAQGVAVEHHTKIRSATSA
IMAWNTLRDFYNRTTMHNRVTMTRRLHEFKMEGGVTMAKHLDDFDELIVGLQTLGEPLDEARQLVILLSSLPTEYELICS
IVENAKDFTLIEVKEKLLKEYERLDKKEGAERALKATANGSKFRCAKTFRGGKGSKAFGSRKNGGFKGKCFNCGQVGHMK
RDCPDPNAGNNDDDAVFAVGKSRSAAWLIDSGATAHMTPHRNDLFEYKDLDSDVEVTIADGKKIRVVGTGSVRLTGIDGT
RIKMIDVLFIPGLDRQLLSVSRLAERGMIVEFQKKSCTIWNKSKAIALGKKVGKAYMLDCEKDMAHYVEYAGVDSEWELW
HARMGHLNKDALAKTQRATTGMPTLDHKSMTICGGCMKGKQTVAHFPSRSLSKTTKVLQLVHTDVMGPMKTKSKGGARYV
LTFVDDYSKYIVAYFITKKSEVPVKFKTFMNLYENQWGERIKCLRSDNGTEFVNKEMDRLCALNGIVHQKTVPYSPQQNG
VAERMNRTIMEKARSMLYYKGITTMWWAEAVSTSVYLINRSTTSTHSSMTPHELAFRDKPRLDHLRVFGSVGYAHVDKAK
RTKLEPKSFKCMFLGYAENSKGYRVYDLESNKVKVTRSLKLDEREVDGIYESTPTESTTDIHSTEDVDEVVQLEQEQQSA
TQAPVGSVEDNHEEDAAMPEAESDDSMRHGLTTYRTTPGADFSDDLVFHPERERVRRPRDLILALEDEYKVNDEEDPNND
DHFWPPSPKRARVDEDGLLAEAVLAYAASVGDADDAPTTYQQAMKSNEASKWIKAMNSELKAHADNGSWTLVRRTSGARP
IGCRWVFAKKRNEHGRVVRYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKAYVTEQLDADTAFLNSDLKE
QVFMEVPYGILNAEHMMCKLDKAIYGLKQAASAWHQTIHAVFMKIGFHSCGADQCVYVKGTKDNYVYVCLYVDDMIIAAK
TNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMKLTKMQSP
TTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNGNNGKVAM
EAYTDADWGSNLDDRRSVSGIMIMVGGAPVIFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRTMLKDLGHEQVGATQVW
EDNQGAIALASNAGYNARTKHVDIRHHFIRENVARDIILVGYVGTEDQLADMLTKALGTKRLTFLVKASGICTKLAHH
>Copia-11_BG#LTR/Copia 283-4937 via tfasty with Copia-28_BG, 58.9% SW:1625, 1 frameshift and 2 stopcodons. [Blumeria graminis]
MAPSNLRANDMALPPALKLHGIANLKDWMLLIESTLRQNSLSDWIDPVKTEAIYNSEKEAGYKDWTTPNELVKMTLAIYV
DPEFIQIIMAENLACDSYKKLCRFLQGNSIAAVETSITDFLDLTENFEKYSSCQAYILAHKSMVSSLLSLGSPLPSLVYC
LVLIRAVSQKYPQWASTQRYHFSVATSVTPAPTLETLYTTLQDHVRLAESMAPIQVPVSQAHITGSKLKRNKKWDGPNCL
WCTGPHDDTKCFFKYPEQHAEYMKKFPRANYTENKKWRAEFQKRQSPSKISTHYSGFDARFENYSPFGKDTNERVQSTLF
SPPSSSSNFTAASSPYFMDFNPNPLQxGCAGVLTTSSTPTHHNFSRSQQWDNTMLPPEIERRQYNGAFRYVDHELHSINT
GINSVFTSTHPTTSSRDIWLHDDGASVHITNDINAFFRYRPVAGLPFFKTGGSPVQPVGLGYIKLRVLRQDDSVNEIVLE
NALYIPGFPLNIYSEWLHDLRDGWDKHRVLYEADGSEMCQLLRGQNCLHLRTASSPYVPNTNDPSMRPSTFLLSPVAENV
FPAAIHEAPVTLELLHRRLGHISFPNVQRTINTTVGLSYKPRNTDSNLDVTTLCDPCEFSKPKKVVRRHSRNRESNWGDR
FYADVFFCNPVGYNGHTAGMIFTDGKTGGRYGYTFTEKRNAFDALVTFTRFFRTQNGFLPKCFRLDGGNEFGGDKMVAxC
QQYGIAIELTTAYFHEQGGPQERSNRTVLDPMRCVMSDMRIPFFLWPEIFRALIYILNRITTSVYDKMTPYEAQSRATTS
DASEHKPDNSGIRVLGSRVLVYIPNERRIKSQKMDARAEEGILVGFEGNHIYRCWISSRPLGHQLVRSSHVCFFEGRFNE
FSAEDHPDEIPEPSSEFVDEVEIPFPNSPRIGGDSDNSKVNGSVGGAHLDDEIPPLLDARHDMPAEEDPLLVPLPQMLKR
GRGRPPGAKNKPKATSGPNSFDLCKPDSDIRVTRSKTKGSTSLHTPHIENPVLLLEYQAYLTALITDSDPKTFREALLGP
NAVLWEASMKEELTALDMNDTSQILPRSDLPPGRDIIPGRWVYRRKTGKDGQLTRYKSRYVAKGFHQREGLDYKDTFAST
ALSGVWKALLALAAFNDWQVDQMDVVTTFLNPDIDTDIYMACPDGLRTPDGSSLNRWMWKLKKSLYGLKQSPHLWQSKLR
SEVAKFGYKPLLLDSSVYHSISDETYLFTHVDDFLLIGPEAGVSKLRRHLHNAFKMVDMGAAEFYVGIRIVRDRVKRILY
LHQDAYLEKILEKYSLNKCIPTNTPMLPGQHLVPFQGTASSAEIELYASMVGSAMYAATQTRPDIAYTMTQLCRFLSNPS
PIHISAVRHLYRYLIKTTRLGLRFGVGSNTGLHGFTDSDYAQDPETRRSHGGWAFFLKGACFSWRSYQMKRVTCSSTMAE
VYAMAEAAKEAVFLRNLFRSINYNSDDAKIVRIYYDNQARLQPNKRTGRQKSKHYDVPVFLLREYISDKIVELEWKSGLE
NAADGFTKALSPVLFKGFVGQLNMTTLAADNK
>Copia-9_LBS#LTR/Copia 94-4722 via tfasty with Copia-2_PPa, 2 stopcodons. [Laccaria bicolor]
MRPTVFVLRLFLVMAPKESVAATSLSLNEALLKADALRPLISLTRPNNVFVGEKLDKLKSNYKKWSKDMTHYLAINGLLS
YVLGEKSKPSPTTEPHACENWVENDRFAYTAIAMNVSDDDEAELDMAKGAKAAWDTLRERHQNEGPVRQVDLLRTALNIK
CKKGTPLPQTCREICDAVDQAFAMGDFTADLFCCIAIINSLEDFPHIRSSILCDLRASTKDKEYTSKDIRHYLESEETLH
SATKSFSTSDVALAIHTKSYSTPICSNCKREGHTDLYCISTGGGMAGKTIQESKDARKRDREKARGNTNNAIKSNSNTGK
IAVNVKDSTGKAFIIHVDPSDISAPSSSKTEFAGLASDLPESILPDSLENIEWSGWLALEEEPTTSLDWRKHTKPVDIAA
ISEISPLQQNKRTPISLDDLPFYVDTGATVHISPEQGDFLTLRPIAARSVKGVGGSSVTAIGLGNIKLHIARGAHIILEN
VLFIPNAAVWLISVSTLARDSQAVAHFDEATCWITNKSSGATIAHGTLLPTKNLYSLNLLSPHAEHAFTISHAPDLETWH
RCLGHANYQAVREMAKNGLIPGMPASFPPTNPPKCEFCVLGKQTKTPVPKTRKEGPGHKATRVLEKVWVDLSGQHLRSRA
GNEYVMDIVDDYTSQLWSIPLKNKDDAFPELKAWELARESETSQKIGTYITDQGELKSDKMNEWLKSRGIEQRFTAPYTS
AHIGRVERMHQTLMAKARTMRIYADCPPYLWDEFYLTAVHLHSKTLTRSLPGGITPWEKYHRRKLDYSYMREIGCRVFVL
IQNKHNPKVFDRSIECTLIGYDPNAKTYRCYHRESKRVISSYHVRFLESHDGHMRSLPATEDIPLTLNEILQNATPTPIL
SDDEEEDVLPDDLSQINNTQDPQHVANPTDDAQIRHSSRIAEKTNKPKPTRTEIAIQQSIDTGIRLRETRAERKKTLQDI
QEEEMRNSPEIVENAAIAELREIFGTLNLSDVEGDRIDRALSAISELPEIDPSTLEFEDEPRTWNEAKTSADTKRWEEGY
CDELKSLKDMGVYKLIPRSDVPQGKKIRKGMPVFRIKRNEIGKAMRWKVRLVFKGCEQIYGKDYTKTTSPTMRMESWRIL
LHIAATLDxDAQQIDIKTAFLYGLLPEGEYQYMEQPQEFEEPGKEDWIWEIQRGLYGMKQSGRIWNITMNEKMISWGFTR
LSCESCIYYRKTDTGTTICAVHVDDFLSIASNKDENERFKNKMREAWTISDLGNVRFVVGIAVDWDRPNKTVMLSQTALI
NKIVAQFGQxNASPSTLPMDPGLKLRCANYKNMSKVELDDIKKLPYRSLVGCLLYLSIGTRPDITYSIQQLSQYLDCYSY
AHWNAAIRVVRYLSGTRNLKLRLGGTNQISLLGFTDSDWANCLDTRRSVGGHAYSLGSGVVSWQARKQKTIAASSCEAEY
TAAFEASKEGIWLRTLLNSINHTTTKPTTICCDNNAAINLSEDPALHDRIKHIDIKHHFLRERIQSNEISLSYINTNDNI
ADIFTKALDIKKFNRFRGFLGLS
>Copia-8_TC#LTR/Copia 205-4756 via tfasty with Copia-5_GM, 71.3% SW:2875, 2 frameshifts and 6 stopcodons. [Theobroma cacao]
MAESTHANTRNNSQTTQITQISPIVDPQSSFFLHHTDSPSSIVINPKLNSSNYLAWSRSFLLAMSIRNKVGFLNGTIPKP
QITDPLFLSWTRCNNLLVAxLLDSISxPIASTIFFMDIASEIWRTLKxNFAQSDDTRVCNLQYTLGNISQGSRTVDSYFI
ELKGIWEELRSYRPLPHCKCGNCNSGCFKAYSDQYQKDMVFRFLNGLNDSFSAIRSQIIMMDPIPTLDKVYSLVQREETQ
RSLLIQGQAVFESSAMMTVVETRKKGTRKDISCDHYGKKGHIKDKCYKLITFLGDFKFTKSKPNFRKAKTVANNATSIHE
GPESDGCKIEQLDEGIGTGSMSQLLTIKQQISKLMELLNENNISSNYGKTSTQITQQGSYSLVNSAFAGITSSHLCFHTS
NNLPPNLKNVNVQMIKQNHWIIYSGATDHICYSLDSFESAKTVNNCYVELPNDRKATVSHIRTVKLSPTLTLENVLHVPS
FKFNLLSVGKLTQNKKTYVLFTDMHCIVQDVISQTVIGVARAYTGLYLMQEKHVEKDTSMSGFDKLKFPFISSVNGCNSA
DRCFDLWHFRLGHVPLEKINVIQKQFPTIKCSNDLLCEICSLAKQKKLPFLIHIQSTKIPFELIHVDIWGPYETPTLSNQ
RYFLTVIDDYTCFTWIFLMRCKSDVLSVIPTFNNYVKKxFEHSIKCIKSDNGLEFRLKDFFDKTGIVHQLSCVETPQQNG
VVERKHQHILVVAKALLFQSSLPIHFWGDAVMTAVHIINRVPTRLLKNKSPFELLYKRQPSYEHWRVFGSLCFVSTLSQH
KKKLDQRATKCIFLGYPNNTKGYRVYDLNANRIIISRNIVFHEGTFPFQSKQHTTWPEPFCQTLGMHTKYSPQIDSDLPN
FHFQDYKPAETYSSEPNTSAQTPLTSQINDFEPNSLDTVNMLTATNNENVTSNNEHDPMINLPVRRSTRHKHAPKHMDAY
HLNMPSKSHNVTAHPITKFLSTKNLSPAYKTFTTSLSHTFEPSTYHQAASYSHxRDAMSAELKALQDSETWSIVPRPLNS
HVIGCKWVYKVKLNADGQIERYKARLVAKGYNQIAGFDYKETFSPVSKQTTVRVFFAITAAFNWHLTQLDVNNAFLNGDL
KEEVYMDIPPGYEIQGEYPENVKLVCKLHKSLYGLKQASREWNAKIKSFIIQYGFIQSNADHSLFTMKTNNGEFIALLLY
VDDIVVGSSSKQAADDVKLFLSSHFKLKDLGTVKYFLGLEIARSPEGISISQRKYTLDLLEEHGLLGAKPVSTPIDYNQK
LVKAQDEEKLINSTNYRQLVGKLLYLTFSRLDIAYAVQVLSQFMDKPSLEHMNVAHRVLKYLKGSLGQGILMKSESNLMI
VGYCDSDWAGCPNSRKSVTGYNMFIGNSLVTWKSKKQSVVSRSSAEAEYRAMASTSCEIIxLKHLLVDFGIEHKVAVVLY
SDSQSAIHISKNPVFHERTKHIEMDCHFIREKVIEGTIKPVYISIDLQLADLFTKALQPRQFHNLLNKMNVHNIHISS
>Copia-8_TA#LTR/Copia 95-4829 via tfasty with Copia-6_BD, 70.9% SW:3569, 1 frameshift and 1 stopcodon. [Triticum aestivum]
PPSHPSAAARASLPSLLPDQPLLPPRVASSPEPPHPPPSRAASIPSRATTPAPPPLPSVAAPPMASPHSAASLPSNPFEG
PAPPPVKVVRDLDIFARVPVVLDYATSTYYAWKTYFSLVFREYHLIDHVDGSVDSGLMYADDDWLTIDATITRxLYQTIS
KDIFHTIVCDTDDAQMVWAKLNGLFLDNALQRRIFLQQEFFGCHQLDWSIDDYCMRLKKLADELRDLGERVFDDLLLSTL
TAGLNEEFSNAASNLTFLPDPTFPRVVAYLRLEERRMKMVKSRATHTALAAGTSRAAPPTAPPPSPASYFQAPPAPVYQP
PPPALDRCRRRRHGKKQQQQHGAGGGGEGGHPPAAAAAATPGPMGRRDQPLDGGGPRVHDARAAGPRPGAHQALLTAPGG
YPAAAPPYTVPGGYAAPGGYAAPGGYTAPPVAAAALPAAPWDPALLAALHSAPTPNTYTGGGDWYMDSGATTHMNSNPGN
LNSAFPVSSACRITVGDGSSLPITHVGHASFPFNSTPIHMSNVLVSPELVTNLCSVRSLTRENPITVEFDEVGFSVKDAR
TRMVLHRCDSPDGLYQVTSTDTSTSTPVALSATVDLWHARLGHPNPATLRHILRTFSFTCNKTDDHTCHACRLGKHIRLP
FRTSSLVASYPFELIHSDLWTSPVASNTGFLYYLVILDDFSHYVWTFPLRRKSDALSVLTTFYSYVATQFGRPIHALQTD
NGKEFDNVGVRTLLATHGTILRLTCPYTSQQNGRAERILRTLNDCVRTLLFHANVPPRFWPDALSTASLLINVRPTRARG
NYAPHQLLFGSPPSYDDLRVFLCLCYPNRLTTPHKLAPRSMACIFLGYPPNTKGYRCYDPVSHRVFTSRHVYFDERSFPF
HQVPPPADSSSSPAPPGASRGGRSLALGPPPGFGPPAARRPPPGYGAPAAPGPHSRSTATDPDLSAPATAPPTPVESAAR
SASASPAPDPGSSTASTGPVASSLAATAPPTPVESVARAASDSPAPGPGSSTASSPASSPASSPPPPAAPETHMVTRARA
GIHRPSNRYPADEYLLAASTSAPSPLTLSARAALRDLHWLTVMQEEFDALVRNRTWQLVPRPPHANVISGKWVFRHKTRP
DGSLERYKARWVVRGFRQRAGVDFTDTFAPVVKPGTIRAVLQLAVSCAWPVHQMDVSNAFLHGHLSEQVFYQQPAGFVDA
AQPDHVCLLSCSLYGLKQAPRAWYQRIVGFLQQLGFQATRSDASLFVFHQAPATAYLLLYVDDIILMASSPELLRQHTAR
LSAEFAIKDLGPLHYFLDIEVVRRADGFFLHQQQYAQDLLERAGMLNCKPVPMPIDTKAKVSALDGSPAADAAFYRSIVG
ALQYLTLTRPDLQYAVQQVCLHMHAPRDTHWNLVKRILRYIRGTTALGLTLTASPSIDLVAYSDADWAGCPDTRRSTSGY
CVYLGPSLISWSSKRQPMVSRSSAEAEYRVVANAVAECSWLRQLLQELFLDVQKATIVYCDNVSAVYLSANPVHHHRMKH
IELDIHFVREQVALGRVRVLHVPTAQQFADVMTKGLPTPTFEEFRSSLCVTGDASTAG
>Copia-9_BG#LTR/Copia 157-5119 via tfasty with Copia-10_SMo, 54.7% SW:786, 1 frameshift and 3 stopcodons. [Blumeria graminis]
MSSSAFGLSKADREVIAQAGGAEQSGNVESLFGPTKENADLTKVRGRSESMRPPLKRNTLFREYENDSMLPPPKVEFKGK
GKMKSTERTDVENIESINMPPARGSSDWLGVGYGKSAASDSRGFGRKTTLDWKSLEWNPHHSMFLKGMSNWGSYKSAITL
QLESIGYEVGTELTTMDELKIAALIQRTSEADVSAIVDGMKVGTAILDLYDSIYRQSGEIQEDALYSDLSDLRYEGGCPI
LFVSKFKSLVRDYQSAGGQLGPRQLTSIFKNAVKTKARRWHELTSTVARFQPWTAEKLIQDFISHHHHLVGQIHDSTISN
SINRKIGTVNNAQDHRYKPRRQIAQKFKGIGPDGKFRCWNCNEEGHTSRECPEKDKESNSRKDFSKRTPKGLGPPPVLAA
EYCKVSDEEIDFNSHATQVNQYAFDNLVKFYDTEMARRRNQNVKDINDICAEEIVGEIHLSQQILSASSNNETKNRWLFD
TGADIDATNNRRNLKPGTIVELGATQFPIQTGNGVVYAECVGEAWLSLKGPRSTKTTMSLKYVVCIKVFPLNIISGERFY
RSGGQLQGNKMIDPNGNTLTYINPERRGFFLWLHDEHEPLKIMAPKKVVSQISEPPENSHSCSKTPDPAEICHLKTSLNS
CWSNGVFKMSDDVMRRLILWHRRLCHPSAERMRWTIKNTIGIELQISDVESLPCEACDMGKSLKYTTNARKSPMKNVGEG
WHCDVGTLNPLSMEGYGYFCLTTEDLSRYRIFRAMKxKSEAAVELKKILSEANHELSHHGLKVKxVTIDGGRDWGLTTFE
SFAADQGIEVIVSAPNNQHQNGVSERGIRFLQDAARCCAIQMKVPSVFWNRMLEMTCYTLNCTSQSSTKDHKTPWQLYxT
VMDPSKAWTDISHLWIPGSLCITHVESSHRVTSEKLDANGTKSVFLGYRGCTNKLVWLLDGGRFLVSPKVTTYERVGPNH
GWAPDPRQIVRSLPRAVQDRLKCRKMDYARNEDYNRLPESPIHPLLPRGCGRPKRVIQRPYEEQQLLVLNAPLEVDFDLS
MILSQQGESNNAGAPLHEDENSDLTTTKDHEMSIHLAIYRSIDKSLYSLQDGGDHLFRMAVNSANISRYFQAPSPDEPSL
KVAMKGPERNEWLNAMFKEIEECLNRGTFHFVPRLPAEHRGHLVTSKWVLKKKYKSSGELEKYKGRIVARGFTQTKGIDL
NETIATTARSASWRILMALAALNSWHILQADFISAYLAGELKESIFMEQFPYLNEFFIEKPELAKRHEYRLDSIIELKKP
LYGLKQSGACWQEKVRNIMSDKGFSSLISDNAIYRNKDSGIIVASYVDDFLLIGPKKVELESLSAALNKDVPLHDLGDAD
WFLGVKISRSSPTGSVLLDLSQYIERSLDDLGVKSERKVETPLSVGCKVDMKKYTGKATNSELFNFQRLVGKYNFASLML
RCDISQATSQMARYMCNPSPQHYQHMLRVPQYLSSRPNMGILYERKHRHLIEYGSYGLHCAVDASFADDHDSAKSTTGYV
IFMAGSPVIWRSKLQTTVSTLTCEAEYAAIFEAVKDCAWVRSFLTELDQMPPGPIPVLEDNTGAIKWVSNDGMTSGRRHV
RVEYHYASQEARDKHIEVRQIASKDNPADGFTKPLDAASFHSFVKHLGLYNKQN
>Copia-9_ES#LTR/Copia 224-5085 via tfasty with Copia-106_AA, 57.4% SW:1199, 1 frameshift and 1 stopcodon. [Ectocarpus siliculosus]
MAESTGKLTSIVRGIPKFDGNPNKYEDWKVDIKTVLELSRRDMFEILNGDSSRPNEIYARRARASGTMEAPVPSEEVADG
DSSKAVGTQEESSASSAATAVVIPGRTADRDSPGTGSPDLQARDLEQPGPPQNQREIDEWEQINALLYNVLFLTTSGDAK
CFMRTYESKKGRKADGQAAWLALENKHQNKSTHRRQQLMTRLANFRMEEGSDPDTFFRNIDQLAEQLELVGEHVSRHRKM
DTIMRGMPREYESIKFHVMSNPDFTLEQLKFTIQNMHMNGYATSGRRGRGSAMAAGPARRDTSKVRRYSCGELGHYQKDC
TKTGGSADNLGGDTSTPRQNGDTTGKKKWCSFHKTHTHDTSECKASAARKAAPKSSRKQHRQGKSNFANAAAEEDESSSD
SVSTKDIARVFKHISLSLQASEEKDSTTSDQDSDDIPKAMGFSFTVTEEEESLSTSDHNTTRLPMMVDSGASAHYIDDKL
VPGIKAMMTDYRRLVPSRVITTAGLHKLRGTATGYIRCGITDSHGKTHVACLPITIVPGIGRNLFSSGAAQTKGIETIIS
DVPRLKRKNVHFPLRRDGSIFKVDLKILPKISSAQAQSAFPATNEDTDNWHRRLGHLNENSMKTLRSKPDSGVLFQGDLS
PCKVCKLGKSAQLKHPKEPTVTTTSPFELVYTDLAGPFKPQAKDGSNYFSKFTDHHTRWKAVYPISSKDQAIDTLAYFIQ
DYVIPLGLRVQRLRCDKGGEYVAEYYRSYCRETGIKMEFASTNTPQQNGVSERDGRTIMNMTRCILIDTGLPKFLWGEIC
ETSVFLINRSPHRALGGSSPHSKLFGKEPNLSGLRGIGARAFVHNERHGNKLEQRAWEGIMLGYSKDSKSYRVYNPHNRR
ITESRNVTFIETPPTAIPEAGQDKLLSNQDEDEDADNNGADEAYRWDILAHLPLLGTTREEPNNEEDQELEKNNYLEGSP
RPLTTTGSGVTFDPPSTPDSVGTPSSRTSFDHGEDSTQGQDPSSSSLLPDTSPDRATSLRSQGPVTSLSRTLRSKGPAQD
PPSVDTAGLDGKTRLELKRLATSATFEKEDYAHEPERSSLVEYAYVTETITQSNPDPASITLPNTFKEAKASTHSAQWSK
AMDKEMASLHENNVYDLIPRSAVPVGNKVIGSRWVFKVxSDYTFKARIVCQGYAQRPGNRYAGQPLQPVCRIESQRILMA
IACHFDWDILMLDVKTAFLQSPIDSPTYVRQAPGYEKLDAQGKPFIMKLKQAVYGLRTASRVWHLTLDKALMAMGFRATK
TDPCMYITEIGGGYCLLTIYVDDILLTSPDKKLLVKKKKQLMDRFTMSDLGEVSLILGMKITRDRVKKTLRISQTDYTTS
LLERLGMQDCNPVSTPSVGGELLLDQPAETLLDEDGIKTYQSLVGSLLYLSRTSRWDISYAVLELTRATSKPSKAHMSRA
KHVLRYLKQRPELDIVFKSRDFKIQAWADASFAQDLEKRRSTSGYLFLLCGAPISWASSLQSLTALSTTEAEMVSISYAA
RECCHIQDMLSELGFLNQFSNIRIGNDSTGALSLVSNNSYSARTKHLQLRKWFTTELIESGRLSVYHVPSGDLPADLFTK
STTKAIHRKLVDQILAYSTKD
>Copia-9_EPa#LTR/Copia 16-4250 via tfasty with ATCopia8B, 81.5% SW:4413, 7 frameshifts and 2 stopcodons. [Eutrema parvulum]
MAEGSMDLYSPPSLNIVNSVTIKLTEKNYILWKRQFETFLNGQRLLGFVTGSIQQPDKVITVPAITGTVIQATNPDHQLW
FQTDQVIQSWLLCSFSEDTQTVVVHCTTSHNIWITLARHFNRPSQNRDKSMSDFLREIKNLSDQLSSKGSPLTEKMKIFA
AFNGLGRDYEPIKTSIESSIDSLPPLTFDDIIPRLTAFDDRLQSYDAGSDVTPHLAFTSVQTDQLEAHYTAHGRGNRGRL
GNNRGRGGFSTRGRGLHQQITNYQGSNASSDSDSRPVCQICRKVGHSALKCWHHFDNSYHLEDVRRALAAMRITEVPDSS
GSEWYPDSGATTHVTNTTRSLNQAQPYLRTxTVMVGDGNFLPITHVGSADLASSSGTLPLKDVLTCPNIAKFLLSVSKLT
SDYTCSFKFDCDGVRVKDKVTKQLLTTGVNSKGLYKLEDHRFQTFYSTRQVSASDEVWHKRLGHPNEKVLQLLEKNKAII
INKRLNKMCESCHLGKSCRLPFAACSFSASEPLERVHCDLWGPSPALSVQGFCYYVVFIDNYSRFSWMYPLKQKSDFYII
FTAFQSLVENTLHEKIITFQCDGGGEFITKLFLLHLEHCSIKQLISTHPHTPQQNGLAERKHRHLVELGLAMLFQSKLPH
KYWVEAFFTSNFLSNLLPSSVLSEHQSPHQLLYGKSPDYSALRTFGCACFPTLRDYATDKFDPRSLLCVFLGYNEKFKGY
HCLYPPTGRIYITRHVIFDESSFPFTTRYLSLQPVPETALQNAWFKGLDPTPDNNISPQPVSEQPQPVSAAVPCPLFTES
DFPPLLSQPQTSSSALPMSTTQERECSERTTGADPVSIGDSAPLSLNRSASVDTTTQPPASSQQNTHSMVTRSKAGIHKP
NPRYALLTHKISFPEPATVTEALKHPGWTAAMKDEISNFAETSTFSLVPYTPDMNVLGSRWVFRTKINADGTLDKLKERL
VAKGFHQEEGIDYLKTYSPVVRTAIVRLVLHLATIMQWEINQMDLKNAFLHGDLSETVYMTQPAGFVDPTKPDHVCLLHK
DLYGLKQSPRAWFDKFSSFLLEFGFLCSKKDPSLFVxQHKKYVILLLLYVDNMAITGNNSATLDRPIAQMHKLFRMKDLG
PLHYFLGIQAQFHPDGLFLSQQKYAEDLLAVASMSNCTPMPTLLPLQLKKLPDQDALFSHPTYFRSLVGKLQYLTLTRPD
IQYAVNYVCQKMHASTLSDFTLLKRILLYIKGTITMGVSFTKDSDCTLRAYSDSDWAGCKDTRRSPGGFCTFLGQNIISW
SSRKQPTVSKSSTEAEYRTLSETASEISWISQVLRDLGVPLPLTPELFYDNLSAVMLNANPAFHSKTKHFELDHHYVRER
VALGALTVKHILGGHQLADILTKSLPAPAFCSLRFKLGVDVPPIDQDVLNWR
>Copia-12_Pru#LTR/Copia 77-4467  [Prunus persica]
MVDSADMKSTSSGMTSRSRWESPNHPLYLHYSDQPGAVLVPQSLVEDNYSTWVQSMTMALTVKNKLGLVDGTVKKPNEDE
HEELQQWNRCNNLVKTWLLGSMSKEISGSVINCKDARQMWLDLQERFSHVNIVQLFHIENEIHDCVQGNMTVSSYFTKLK
GLWDERDVLCSIPACSCDTKKEITSYVETQKTMKFLMGLNDSYSTVRSNTLLLEPLPTVNKAYSLVLRHERQAEISSGKH
TPSSEAAAFAVKNSGRETAPEDGGLRCGKCNKTNHSTQNCRAHLKCTFCGWKGHSFEYCRKRKAAAEAEQSRSSTSKGNQ
VAVHEKKDGMPNFPMPNFPFSQEDCKQMLAMLSKNRSSFANQVGNSSNNEELSGKAFSFMYNGITNVWILDSGATDHIVC
SPHCLTSSRSVANHTVELPTGSLATVTHIGQVVFSPNLVLNNVLCVPFFKLNLISISKLAHDSLYITIFLKQVCVIQDLR
SGKMIGTGIEREGLYYLDPPKKGTCNAIQTSNHHLWHQRLGHPSQTVSKLFPCFQHKSCDSIKCVICPLAKQTRAPFSLS
SISTKSCFELIHVDIWGGYHVPSISGAKYFLTIVDDYSRSTWIYLMKHKSDTQQLLVQFIHLVETQFDTKVKMIRSDNGP
EFNLASFYATQGIIHQTSCVHTPQQNGVAERKHRHLLNVARALLFQANMPKCFWGDAILASAYLINRTPTPLLHGKTPYE
QLFHKAPNYSHLRVFGCLCFASTHAHKPSKFDPRARRCVFLGYPYGTKGYRLFDLQLHKVFVSRDVIFFEDQFPYHSDVS
AAHNQSPNPPASLSYFDLDSFPATSPMSHDPPAPSSPISPIASLPSPSPSSALTSIPVPPSSPDPTPLSLPPVSPTVLPT
PPRRGTRPTQPSSFLQDFHIEVSLPSRSAPTSSTNVVQSSSGTSHPLSTYLSYDRLSPHHKAYTANLTLLKEPTSFSQAV
RDPNWCAAMQHEIAALQANHTWTLVPLPLHKRPIGCKWVYKIKLKPDGTLERYKARLVAKGYSQIEGVDYRETFAPVAKL
TTVRVLLSVAAVQGWHLHQLDVNNAFLNGDLEEDVYMTLPPGFGRKGETRVCKLNKSLYGLKQASRQWFIKLSNALKAAG
FHQSWSDYSLFVRSRHGNFIALLVYVDDVILAGNNLHEIEETKQFLSHHFKLKDLGELKYFLGIEVARSKRGITLCQRKY
ALEILDDAGFLGVKPSRFPVDQNLSLTQMEGKVLNDPSSYRRLVGRLIYLTITRPDLAYAVHMLSQFMEKPRQPHLEAAH
KVLKYIKQAPGQGIFLPSTGSLQLQAFCDADWARCRDTRRSITGYCVLLGQAPISWKTKKQTTISRSSAEAEYRSMATTC
CEIIWLKNILKDLGVKHPQPANLFCDNQAALHIASNPVFHERTKHIEIDCHLVREKIQEGMIRTAYIRTSDQPADIFTKP
LSSTQFEVLLSKLGVINIHSNLRG
>Copia-18_CQ#LTR/Copia 178-3183 via tfasty with AACopia1, 3 stopcodons. 300 AA internal deletion. [Culex quinquefasciatus]
MADPKTGITRLNEANWSTWKLRMEALLDTEELWDVIEEEVPAAEQQDAVWTRKDRKARGHLIVALEDSQLRHIKGKVHAR
DIFGALKAHHEQATRSVRVSLLKKMCALILPDGGDLVAHLREFEVLFDRLEAAGTSLDTDTLICMLLRSLPSSYDGVVTA
LDCLADDDISLEIVKAKLEDEYSRQQERKGGSRQVEKAMRTAESKNRKKPPKCFNCGQLGHFKGNCPKLGGDQKKGGSSP
KPDGGGGAKAKAAQNDARGVAFTVGGKQTACWVIDSGASAHMTNDREFFESLREFAGGNITLADGKKTEIQGEGSGTVFG
IDGEGRKVKLDVQEVKYVPGLSTNLISVGKLANKDYSVVFDKVSCSVVSDSKVIATGGRHGGLYYLRQAEEESMVAAERR
HKVDCQHQWHRRLGHRDWAAAEKLVKDELATGMKVTDCGLRLECECCMEGKSARLPFPPVIDRKSSKVLDIVHTDLWGPI
KTVTPSGNRYVMTMIDDYSRFTVIYLLKQKSEAADRIKEYVRWVENLFGRKPRVVRSDGGGEYDNRELRTYYKAEGIKPQ
FTTAHSPQSNGVAERKNRSLTEMATCMLNDAVLDMRFWGEAMITAAYLQNRTPSRSIQGTPYELWWGRKPDLKHLRVFGS
EAYVHVPGVNRGKLDSKARKLVFVGYAFEQKAYRFVDVETDKITVSRDARFLELGNGTSTVEWSTDNPDEEIQLKPFVVK
KEELKEEDAIEEDTAGDDVAGGQISESDDEEFQEAESTPNASPRRSTRSNLGTRPRYLDDFELENAVGIAACAVEEPVDH
KEALKEPVWRTAMLDELESHQKNGTWKLVQLPEGRKAIGSKWIYKVKRDENNQIVKFKARLVAQGYAKHHVGEPSPTLRD
AFIDEExVRRPLRVVPRSGVAQTTSPxLRRATRQPDGHQRRQPRLLGVCAFRTNEPTIQAHRHEAEVHPRVVPEEGDQAG
VLPNRPDDCxRVDETVGANEAPGVLRTTRTRAASVRRFTLRG
>Copia-18_CP#LTR/Copia 142-4467 via tfasty with Copia-91_VV, 81.5% SW:4486, 1 stopcodon. [Carica papaya]
GSSFVTGHRLNGSNYLQWSSSVLMFIRGKGRDEYLTGELSPPPANDPNARTWKVENNLVMSWLVNSMTTEIGENFLLYET
AHDIWVAAREFYSTRDNTSAIFEVEASLHDLRQGEKTVTQYYNFLTRKWQQLDAFEEHAWSCPEDARRFRSIVEQKRIFK
FLFGLNKYLDEVRGRILGTKPLPNIREVFSEVRREESRKKVMMGDSQLSPNLAESISLSPETGAALTSRVTERKGRPWCE
YCKKPGHVRGRCWKLHGKPAEKESAEKKKTPKQEMEETHRGNFVSTEEESAAAVPTESPLFSPEQISLLQKMFSPNMVLG
NASTAHKGNFSGFSTYSTKRGMWIIDSGASDHMTGDISLFKEYSKCRGKFSVKIADGSSSQVEGTGIIALSPKLILYSVL
YVPNLDCNLLSVSKLSQDLNCVATFNSKLCEFQDLDSGKTIGNASMDSGLYLLQADNSSLSRQTHHAVCTNSESVNNLNR
ECPIMLWHYRLGHPNFLYLKKLFPTLFRNKNPTSFQCEVCQLSKHIRNSFPSSVYKPTKPFSLIHSDVWGPSRVTNITGT
KWFVSFVDDHTRITxIFLMKEKSEVGQIFQKFHTMIQNQFHTKIQVLRSDNGCEYFETTLSQYFSDHGIIHQSSCVNTPQ
QNGVAERKNRHILEVARSIMFTTHVPKFLWGEAVLTAAYLINRMPSRTLAFRTPYDTLLRAFPQSHILHTLPYKVFGCSA
YVHVHTHLRGKLDPRAIKCVFVGYSPSQKGYKCFCPKTRRFYNTMDVTFFENQSFYPTTDIQGESPNQEYQVWDISTPPL
TSLPLTIPESSSNFPETSIKESEPEPVPTTINKELRVYTRRNKTPVDKDSEPTTHCHESIPVPSSKNTSGNEFSGTISDT
VTITDHDTELPIALRKGTRSCTKHPIQDYVSFSNLSSKYHAYVSKLDGSPTEPKTIHEALALPEWRGAIQEEIRALEKNK
TWELTELPPGKHKVGCKWVFTTKHNPDGSVNRYKARLVAKGFTQSYGIDYQETFAPVAKHNTIRILLSLASNLDWPLCQL
DVKNAFLNGDLEEEVYMEVPPGLETTYESHKVCKLRKALYGLKQSPRAWFDRFTKAVKHMGYEQCQSDHTLFVKNSASGK
KAILIVYVDDIILTGDNIEEIQKLKTFLATEFEIKDLGALRYFLGMEFARSKKGISVSQRKYVLDLLKETGMLGCKPAET
PMETTTKVGFKNGKPVDKERYQRLVGKLIYLAHTRPDISFAVSTASQFMNQPTDDHMNIVYRILRYLKKTPGQGLFFQKT
MNRNIEIYTDADWAGSVTDRRSTSGYCTYVWGNLVTWRSKKQSVVSRSSAEAEFRSLAHGICEGVWLKRVLMEMKFSVTT
PMKVWCDNQSTISIAKNPVHHDRTKHVEIDRHFIREKIEDQTITILHVPTSQQTADILTKALPKGPFNELISNLGLLNIY
VT
>Copia-18_PIT#LTR/Copia 7-5969 via tfasty with Copia-8_BRa, 61.8% SW:1272, 1 frameshift and 3 stopcodons. [Phytophthora infestans]
MSPIRAQSATDVAAGVPDTSSGISTNQDQASTPLAGNSSLNNDATLSHSDAERLIRSLAGIPGGRPLFQMLLESMHKLSS
TNTEESVPVDNPPQSPLNEQNGDRDPDDPWRPLDNMNPTGRYNDGELAEYTKVLINSPPIKLPKLHLKGDYKAWKSEVPL
HFEPKMLGDITYGPERYDAVEGMRRDKYRVWYKSRKNKAFSALALSLSVDLRTTFKIDDIHDNMDAAAMLYDAITQHFEA
GDGINPDYLLQELVTRRLKPNESVSQYADDIAKKVTLLHQANGEFAEWQHASLLLSNSVEAFKDLAREHGDWLNNHDRKT
LTLAKALQRLRAAEHQRDQLRAQTRQPVAHSMQIAHVGTDQGQGQARGRKRNKQQRKRSKGVADKKQRTNCANCQGEGHW
YAECTALTGQQLKPELARKLQERQLRAPVSLVNSVRRVDAVASEEDGQGLFAGLSLCDANAIDLTDGAALSSTATQSPAW
SLKSPAESEEGGERRVVEGVRASTQRTQSSVAQATQRLQLQVGVPVQHIQVGGQGLQQRQSTSLPTLQAPAVAVQTAIQS
AIQPEVQPTGQPAVQQGVQATVLQNMQPTVSSTAQTQWEGNRSTAGLVPTWESVIYYLGQGLSSNSKGPTLEPWRNQAEP
QGGSTVPGDSCRGPDVGFNRRQESGMRNDCRPNLESAYERGLWSQDVGHFDPPIQGRGRSRSPPRFFNRERTPPRGRGRS
PSMRGCEPRGNPGRYRSPPRQQQWRNERPSRYEPPPQRDDRLSRYGPSSPQQQWRDNPSRGRGPSPRRDNFQGRNMSPRR
FEDRRENRPPNSRQVNAVNQNQGMQSAQSEFVEWILDSGSQANVCGDLSLFTTIREDQASRLDFANGTTEHTSVCGSVLL
RVVNQATGQLEDRLLDDVVYTPNAKVNIISLGYLQTKGIFKLTCSEDQQTAWISKPSTSLKFRMRDSIYRLRAERVTGVM
VMAALKEDMDSKKAMELLHQRFGHMSMETVKVLANKLDVGVKMNAKGLTSYECVACAASKEKRMSYKRIPSRKSEPLETL
MMDIFSVNEQSVDGATMFLFIIDESTRYKWPFLLKKKSEATFHIKVLLNRLRTRFPEKKVRRLHSDQGGEFASKELSDYC
VDQGIEQQFTNAYSPQENGIVERANGVVLPRIRAMLMATHMPNSLxGEAFLHVVTTLNWLPTKPLGLVSPHQKLYESEPM
LDDLRTWGCLAHVRIPSESRQAKEKLEARARLCLLLGYSEATLGYKFIDLVTAQVVTARSGNVKFHEEFTTDWHLHEASI
RERILxWxSYSTQTVPVARIKTNMETYLPGWSDGISSAEKPLEAVPLADEPAETELSSSGSLSIADAPVSKDSAETAGVA
APAVLQDPAEETEKGLEVRKRKRRRIKKKPVMVEKETSGFEIQPPSREPCLKRPRRKQKANVRLSDYVVGLVQAMTTDVQ
IPTTYKQARASKYWQQWRAAMLVELQSLKGHKTWKLVPRKDAKKVKVITCRWVFAVKRDERGRIKRFKARLVIHGFKQQL
GINYSETYAPVIRFETIRAAIYYAVQRGWEVLQFDVKTAFLYGDLDETIFMEQPPGFQVDGPGSICRLLKSLYGLKQAPN
VWIRTLHTKLVAMGFTRTDSDYGLYALRKDGEVKLLLTVYVDDLLLMGSRDLCATIAASLQETFELTTMGTVKYLLGVEI
LIDRPRRQIVYCQKQYVLEVLKRFHMENCNGCATPEATTPSKTDVPASKEYLPYRELVGALQYLVSASRPDIAHATRHLG
KYLASYDHMHFAQAKRVLRYLKATCDYGLVMNVKLQTDVQVSGYSDADYANDPVDRRSISGYITMLDDNVISYASRKQEI
NALSTCEAEYVAMAEATKDLLWLAGLCKELSWKHPVPQLLGDNQGAIALTAKPGKHSKSKHIDNKYHMIRRHVELKQLTT
QHIGTDDMVADIMTKALAVVKFTHFRKAMKVLPIVSSDDNVSEDMATTTTTATALTTAVDAEAVPERH
>Copia-19_DPu#LTR/Copia 40-4305 via tfasty with Copia-15_DPu, 69.3% SW:2792, 3 stopcodons. [Daphnia pulex]
MTTMRDVSNIAKFNGQNLPTWKLGCWILFQQHNLVKLVIGEETLPVEVHYIIIxYAIQQMIILFxFMxTKNADGIVTNAA
AIATWHEKDLLARSYFIATIEIPQQRTLVNCTTAHEMWLRISAQHLKNAADNQHALEQRFFEYRFQPEHDVMSHITEIET
IANQLRDINAPVTESQLMTKIICTLPPSYRGFMSAWDSVPVKDRTIDTLTSRLLKEESMTKQWSRGKPDSQDAAFFAHNF
PSFGDNSRQTPTPRGRGRGRFGRGSSRGDQANKRQHPYRFCTYHKCNIPGHTIEVCRKRLRDEKESRNNHSQAAPAVASD
ANKESTKEAVATDEDSAYMSATCFLSRRAEDWFADSGATGHMTDQRSFFTSFTPVTLGTWTVKGIGSSRLYVCGHGSINF
LTTVNGIKRTLTVDNVLYVPGLGTSLLSIAAVTDVGLSVHFIETQVSFSKDKTIVMMGERIGKSLYHLAIIPLLCDANQP
KFSACFAVPSASSMAIWHQRLAHTSYKTIIKMASNNVVDGLTIPADKVVPDHPCVGCVAGKMHRSPFPIGRTRANQVGQL
IHADMCGPMHVTTPSGARFFVIFTDDFSGWRQVYFMKQKAEVADFFKEYVSLLRSETNNLVHTLRADNGGEFISTSFKTW
LSEKGIRFESSAPYTPEQNGVAERANRTIFEAGRSLIHARHLPLELWGEAIACAVYVLNRVSNSISPVTPHQKWYGLKPN
VSHLRIFGSIAYIHVPKADRRKLDAKSQKCFFVGYSLTQKAYRFWDPIGRRIKISRDVIFDEQLNDISTLELTFPTPKDN
NLPQLFFRQPLPLTTPEPQSIPTTLQENFLVPQVDGEIETAATDTQPEPPHETIDQTNPSGVDPPANTQQTSPVPTRVSP
YPLRIRQPRRQWQSLKSVTFQDEIYEPDSYVEAMQTAEAESWKVATKDEYDSLISNKTWSISQLPPGRTAIMTRWVFTFK
PGVRGTAPRFKARLVAKGFSQRSGIDYGETFSPVVKYDTLRVILSFVAANNLEMSQLDIKTAFLYGELDEEIYLQQPEGF
VVAGKEKLVCRLHKCLYGLKQASRVWNATFDTFLQKFGLRPSDADPCLYLRHRQEEFVSVAIWVDDGLVCSNNESLVQEI
ISYLSQHFEMRHGPANHFVGLSISRNRSDHTLFVSQPDYIRKILRRFHMQDCLPKDLPANPGSRLQKKTGESPSNQFPYR
EAVGSLLYLGLASRPDISFAVGQVAQFCEDPGADHCSAVRRILAYLKGTMNHGIRYGSTKSGLVGYCDSDYAGDIDSRRS
TSGFLFLLNGGPVAWSSRRQSCVALSTTEAEFVAASEATREGIWLGRLMKDIKPGRKGPIDIMCDNKSAIDLIRNPVHHQ
RSKHIDVRFYFVRERQEAGEIDVQQISTIYQLADPLTKPLANPRFASLRESIGIVPVPTDLI
>Copia-19_BD#LTR/Copia 1610-6428 via tfasty with ATCopia27, 3 frameshifts and 6 stopcodons.  Copia2_HV is over 85% identical, and in even worse shape. [Brachypodium distachyon]
MQDMVDINKKDFHELQVDGSNYLSWAMDIRINLIGRKLGPTIVTTPTNAEPIPEINKYAALHYIKHHIQSLKAEYLMEED
PLALWNSLKERYDQQKAIMLPEAQREWSLIRFQDFKSVAAYNSAVHRINSKLRFCNQAVSEDELIEKTLCTFHPSMRILQ
QQYRQQKYKKYSELIYTLLQAEKHDELLMKNHQTRPTGAMPLPEAHASTHINNKFRGMKNFGKFKGKWKRNDKQKMNGHF
KGVGHIKKNDQNDNSQICQRCGCTNHRTNKCRTPKHLADLYLKSTGKRKYVHGNKAEAHFNAMQEDNLEVNPSQSDTQEN
QPEDTNLLAEDDMLVEFTQDAYGDLNxCSYKSLMFKLIIILLDVICIVxHxVExSPSDSIVLCNSDIILYCVIQTxYCNI
NTSYAISLSTMNKFYSKYSFTPIELYGKESEEEELCLVDSCTTNTILRETKYFQTLTKRNGNVMTITGHDKSIIGSGRAT
ILLPMGTTIIIEDALLYPESTRTLLSFKDIRSNNFHLETAKEDNTEYLYLTKNNGSEKQILEKFPSPSSGLYYTYIKPVQ
HVAYKIIFQNLNKYKTWHDRLGHPGIGMMRKIIDNSVGHNLPNKSFPKSSNFVCTACATGKLILKPSHLKIKNESLNFLE
RIQGDICGPIQPISGPFRYFMVLIDASTRWSHVCLLSTRNHAFAKLIAQIIKLRANHPEHRIKTIRMDNAAEFSSRAFND
YCMALGINLEHSVPYVHTQNGLAESLIKRVKLIARPLLQNCNLPTSCWGHAVLHAADLIQIRPSAYHSTSPLQLVRGNQP
SISHLRKFGCAVYVPISPPQRTSMGPHRKLGIYVGYNSPSIIKYLEPLTGDLFTARYADSIFNEDNFPALGGESDHKECQ
EIDWNVTGIQSLDPRTRESESEVQRIINLQHIANNLPDAFTDHKGVTKSHIPAVNAPERVEVPIKTTHLPNANKRGRNLE
TKDKTSLKPPRKQRKSTVNANQPEVDIHQPDVQHQNPNINVRTNLNVGTSKHPDSIVEGNHMEPEAIKEISTNYINSGES
YNRKTTLVDIYFSSKIAKTLQLDPEPKSMKECIKRSDWPKWKEAIEAELHSLNKRKVFSSVMPTPQKVFPVGAKWVFLRK
RNENNEVVRYKARLVAQGFTQRPGIDYDDTYSPVMSGIMFRYLILLAVQMNLSMQLMDVVTAYLYGSLDADIYMKVPDGL
KIPNPKKIATCCVKLQKSLYGLKQSGKMWYNRLSEFLIQKGYSNNDDCPCVFIKKSSKGFCIISVYVDDLNIIGNTLDKN
EARNHLMTEFEMKDLGRTKFCLGLQLEHLPSGILVYQPAYIQKVLEKFNMDKSYPSKTPMVVRSLDMNKDPFRPRDENEE
ILGPEFPYLSAVGALMYLANCTRPDIAFAVNLLARHSGAPTKRHWVGIKNVFRYLHGTKDLGLFYQKNQDMTMVGYTDAG
YLSDPHNARSQTGFVFLYGGTAFSWKSTKQTLVATSTNHSEIIALYEASRECVWLRRMINHIQTSCDIGSLESPTIIYED
NAACIAQMHMGYIKSNITKHIAPKLFFPHELxKSGEINILQTKSCDNLADLFTKSLPTSTFEKCIHEIGMRRLRNLQSSG
GENLLS
>Copia-17_Mad#LTR/Copia 227-4834 via tfasty with Copia23-PTR, 1 stopcodon. [Malus x domestica]
MAEERKTGELVTIQSLSIPNEPTNISGILFGYRLNDTNWKVWSKMMEVHASGLGKHGYLTGKIPAITEDSPGYTKWVTED
AIVRGWLLKTMEPHLLSLFIDLPTAKDIxESASQMFYDGSDESQYYELRCKATRTRQDDRPVNLYFTELKGVWQDLDRWR
PIKMVCTVDLRTRKEELSKDRVYDFLAGLDNGFDQVRSEILRMKPIPAIEECFSLVRREAQRQTTMLGTKAITTSSSMAM
ITKSPSPSLRPSATEAPRPNRTQEDIDKDKLHCNHCNGKRHTEETCFEIHGYPEWYWERKKELKAKGRRTSQAKLAESGA
GVTVVAAGRMGPKSNQEHNSDLGKAAVAAGQSGPKSNILAHNQEGKMEPAAVHEDTDQMLSLIRQISHNDPGKIGTVLIA
STKRDSGWIIDSGATDHMTYDASLFHHKTFPPKENVITANGEIASVTGAGSIALTPSLSLHNTLLVPSLSNHLLSVGQVT
EQLDCVVLMFPTFCLLQDIQTRAIIGRGTKRRGLYYVEDVVPGRVNQVRSSNNNKTKAVWLWHRRLGHASFGYLKKLLPS
LFSGVSDSDFHCNDCILAKSHRTSYRLSLNKRTMPFELVHSDVWGPSPIITQHGIRWFVIFVDDCTRMTWLYTMKQKSDV
GQIFQQFYRMIGNQFSLPIKVLRSDNGGEYLNFELSQFFREHGILHETTCPQTPQQNGVAERKNRHILETTRALLIGAHA
PNTYWADAVTYSVYLLNRMPSRVHNFRTPMEVLTDHVTLPSSLQLSPRIFGCVAYVHLQKNQRSKLDPCAVRCVFLGFNS
QQKGYKCYHPSSKHFYITMDVTFSETEMFFATDQTHPTRQGEIDCIVDDYRWLDLPFELGSSSGLSKGQPCERQLIKDAV
SLGDRSPSTEACDAGPCVMEHAAKSSGGYCTPRETPVQPIDGPEICELASGLTDSAEVAAPTHNNPHPPMLVHAHVPEDI
QEVRSYNSDIGENSYILPPRQNRGKPPDRFSPDGKVRYAIAQYMSTHRLSPKYQALVNQMAGIKIPTKVEEALQDPRWKE
AMEVEMEALQKNETWNVVPLPHGKRPVGCKWVFTIKHKADGSIDRYKARLVAKGYTQTFRVDYQETFAPVAKMNTIRVLL
SLAANFDWPLKQFDVKNAFLHGDLEEEVYMDFPPGYDVPNGAGKVCRLLKALYGLKQSPRAWFGRFTQAMKSYGYKQGNA
DHTLFMKRMGGKVTLLIIYVDDMVVTGDDTEEIKRLQNYLSAEFEMKDLGGLKYFLGIEVARSRDGIYLSQRKYVLDLLS
ETGMLACKPAETPIVQNHHLAIYQDQTPTNKERYQRLVGRLIYLSLTRPDIAYAVSVVSQFMHSPSEDHMAAVMRILSYL
KGAPGKGLIFKKHGHMEIKGYTDADWAGNISDRRSTSGYFTFVGGNLVTWRSKKQNVVARSTAEAEYRGMAHGICELLWI
RILLTEIGFKPRETMLLHCDNQAAREIANNPVQHDRTKHVEVDRHFIKEKLDVKLIDIPYVRSEEQLADVLTHAVTAKVF
KDSLDKLGLGDIYAPT
>Copia-13_MLP#LTR/Copia 77-4819 via tfasty with Copia3_XT, 61.7% SW:1386, 2 stopcodons. [Melampsora larici-populina]
MSSREDTSEDSLLPTPASTPAPENEFEETDAESDTEGNNKDTSSESFHSTHTLVPNNPSPALIMANNQATNYETPAQRQS
IRVNGILSKITINIKLDATNYAPWSDSIRFGLGAAASYDEYLDSESAHSDGVDPSVHLATKKSIFHWLLANMEQTQSTRF
ISMISTFENGVKKTPTSPMILWKSIRDYHISNSESVKLMLRSEITDLSQGSTKDLLEYIDMFRAKVDAYLGANGEMSEEE
QARQFVRSLNREWAEKGCDLLDAGHIKFRDLEIELKKTYQTRKMFNSGRQQSSRVVDTSEASHGRRTGRWQTCSKNRCIG
RDHPTKPHDPSECYHHPNNSSKMEAWKKSKRDAGEWVEYPRGSRGSSRGRGRGGAHFAGGFSRHIGGSDFPDSRELESAF
EGLKLEDREFSYHVDIDGHYSCSAKPQLACVGDQCSSVALIDTGASHHMFHDASLFEVGTMMANDDPKAKLNLAGGGATL
DIHSIGNVTLLNSRGEEIKLKECLYVPELSRNLIAGGRILRAGAVTTVLEDPNFRIDHGKKELFIGRFIGEGSMMYVTIR
SAVSRESHQSSKSSVNQLTILKLHYSLGHPSEKYLKRMWNLGYFHDVLPQNINPKDFEIISKCPVCPLAKNHRLPFSSTR
PRATTFLENVHVDLSGIIRTTAVNREEYYILFTDDFSSYRVSFGLPDKSAETVFDCFKRYIAYSERQTGEKLKMFSLDGG
GEFINGLLSPYLESLGIVVRVTSPYTPEENGVAERSNRTINTKARCMMIQSCLPIRYWYHAVSYSVLLQNRTITTSLNLK
ATPHSMWKGRQSNFKRFQPFGCLAYxHIRKEIQGGKFEAVSRPGVLLGATEDNHNFTILDLETNHIHTSHDVTFQPLVFP
FMKDANKNPDWVFIEDLPLLTRQEEEPTEDQIPGPTHHNHDSDDEDDPFDNTNNPEVVQEQTYESDDDNDIVEESLTPQI
VTKPVLTQEKPIQESNKTPTSPDADSPPSQPQQASRPEPRRSNRDRQQVNxYVPGDSNIIHTPAMRSIVPKMTQTPLRIF
ECREAMRARAEPKSYKMAMKSADAVKWREACDKEMKNIQDMGVWEIVDRPKDAPVVGGRWHFKYKLNPDGSISKHKARYV
AKGYTQTEGIDFNETFAPTGRLASFRVMVAVAAGKDWDIEQMDAIAAFLNSDLKEEIYLELPEGDDDERANGKVARLKKA
LYGLKQSARCWNDEVKDKFQQIGLVQNPHDACLWYGKDENGDETLIYLHVDDMAITGDKIQEIKRLLKLKWRMEDLGPAH
CIVGIEIHSHEDGGYSLSQPAFIQTVLERFNCEDCKPASTPFPGGTKISKASDSEVLDFKQSGLPYNSLVGSLMYIAQGT
RPDVAYAVGALSQHLSRPSMTAWKMGLHVLRYLKGTQSLGLVYSSQATSVEGIQSWNFPKCHTDSDWAGDPSTRRSTTGY
VFKLNGEAVSWKSRLQPTVALSSTEAEYKATTEAGQEVVWLRGLLSCISLGQENPTILCSDSTGAVSLTQKAIFHARTKH
IEVQYHWIRQQVEKNVIKMRHVSSKNMFADTLTKPLHPGPFRELRDQIGLEVIHGHLKQGV
>Copia-13_GM#LTR/Copia 46-4021 via tfasty with Copia-64_VV, 81.0% SW:3548, 4 frameshifts and 2 stopcodons. [Glycine max]
MGSAKYEVEKFTRQNDFGLWRMKMRALLVQQGLVEALDGEAKLESMMADGDKKALLYKAHSAIIPSLGDKVLRQVSKETT
AAGVWSKLEGLHMTKSLVNRLYLKQSLYSFKMHEDRSVGEQLDLFNKLILDLENIDVTIDDEDQALLLLCSLPKSYSHFK
ETLLFGRDSVSLDEVQAALNSKELNERKEKKSSASGEGLTARGKTFKKDSKFDKKKQKPENQKNGEGNIFKIRCYHCKKK
GYTRKVCLERQKNGGSNNRKKDSGNAAIVQDDGYESAEALMVSEKNPxTKWIMDSGCSWHMTPNRSWFEQFSDRADGLVL
LGDNKPCKIEGIGSIRFKFHDGAERILIEVRYVPELKRNLISLGEFDKRGYVFKGEKGILNVVKDSMVVMRGILENGLYS
VDGEVVIGSTATATGRVLSKTELWHMRLGHVSEKGLIELAKQELLYGDRMERLKFCEHCVYGKACRAKFNAGQQRTKGTL
DYDHADLWGPTKTPSHSGARYFLSIVDDYSRKLWIYIQKTKDEAFDNFKGWKTLVENQIGRKIKRFRTDNGLEFCSEPFN
DFYKENGIARHRTVAGTPQQNGLAERFNRTILERVRCMLLSAGLPKIFWTEAVITAVYLINKCPSTSLNFKTPEEIWSGH
PPSLKQLKVFGYVAYAHIKQDKLEPRVVKCIFLGYPEGVKGYKLWCLEAGFKRCLVSHDVVFNETEMAYKTKLGMVQSST
DQSKETDSEKLNFKVETEDKHVETQTVNWPLDEEKFEEEEQEEADYVLARDRIRREIKQPKRYEYADLIAFALVAASEVL
EEDPKTVKVVLASKEKEKWLSAMNEEIKSLHDNHTWELIKKPPGSRVVRCKWIFKRKEGIQGVEPDKFKARLLARGFTQN
EGIDFNEVFSPVVKHRSIRILMAMVAEFDLVLEQMDVKTTFLYGKLNEVILMKQPEGFEVKGKEDYVxKLNKSLYGLKQS
PRQWNRRFDEFMAHIQFHRSHYDNCVYFKFPSKAEFVILLLYVDDILIASNSKSEVEKLKSELSREFEMKDLGAAKRILG
IEIKRDRKRKLLYLSQELYLRKVLERFGMSNSKPVTTPMSQQFKLSTSQAPKTHDDIIYMEGIPYANAVRSLMYAMVCTR
PDIAHAVSLVSRFMANPGKAHWQALKWILIYIIGSLGRVLVYGGARNSRKTVVIEGFVDSDYAGYLDSRKSLTGFVFTAF
GTAISWKASLQKVVASTTEAEYIALTEAVKESMWLEGIAKELKIQNEVITVHCDSQSAIDLSRNSVHHERTKHIDIKLPF
VREVIGQGSVIVKKISTDHNPSDMITKALPSSKFVHCLDLIQLKDN
>Copia-15_BRa#LTR/Copia 293-4369 via tfasty with Copia-91_BRa, 83.8% SW:4237, 1 stopcodon. [Brassica rapa]
MDPTRGKFEIEKFDGKGDFGLWKFKMQAQLEIQGLLSVLEETDPSETDKGKQEEDTDVKKDPKKAEKDLRVRSLLSICLS
DVILRKIINETTALGMWKALERDYQTxSLPNRIYLKKKFSCFKMEEEKPMEESFDQFLKLVADLASIKIDITDEDQAIQL
LSGLPSAYEPLVHTLQYGTGKDTLTVNEVMTAAYSKELELKQKGVNTRGKQSEGLFTESRGRSSSRNDSGNNKQWNNRSK
GSFRSKSRGKNGGRSDKTCWVCGSDSHWKRDCPEKKNTSQSFKPNNSANVASNLPGPIALTASLIVSDEEWVLDSGCTFH
ITPRKDLLTELVEFEGNKVMMGNNTHCTIKGMGKVTIDNEDGTSVTLSNVRYMPEMGRNLISYGQLEQSGCNYTGKGYMV
HFYKEGRKVLTGKYNNGLYYLQGTIRRPEANSAKDCKDFTKRWHTRLAHMNIRSMRHLVSKGYLKKEEIGELGFCEGCVM
GKAHKQKFPKAKHTTEGVLDYFHSDLWGSPNTVSSLSGAKYFLTFTDDYSKKVWIYFLKAKTEVFDYFAEWKLLMENQTG
RKIKCIRTDNGLEFCNQKFDQLCKESGIKRHKTCPYTPQQNGISERMNRTIMDKVRSMLNETGLDESYWAEAASTAVYVI
NRSPSASIQFDIPEERWSGRSPDYSHLKSFGCVAYVHQVKEKTNSRAAKGIFIGYAQGTRGYRVWLIDEQKVVISKDVVF
NEDQLFKDLEAEKSNSKKEQNERVTKKKVTFKSVLEDICEGETSDSGGATEEEEIQGLKSVEEDGSETSSALGQTDDLRN
YVLARDRVRRTIKPPSKFEDGDFVAYALASSEDVEIEEPKSFHDAMKSKEWKLWNRAADEEMTSLDKNETWEYVERPKNH
KVIGNRWIFKLKPGVPGTDQPPRYKGRLVAKGYAQIEGIDYNEVFAPVVKHVSIRLLLSAVVHHDLELEQLDVKTAFLHG
VLKERVYMEQPEGYVKKGQEKMVCLLRKSLYGLKQSPREWNHRFHTFMVEQNYRRSEYDPCVYMKGTSIEDVVYLLLYVD
DMLIAAKEMRTVRRLKDQLSQEFEMKDLGAARRILGMDIYRDRSKGTLVLSQNDYLSKVLKTFGMMDCRAVSTPLGSQFK
LQSLSKADEEKQGRDMENVPYSSAVGSLMYAMVGSRPDLAYAVGLVCRFMSKPGTKHWLAVKWVMRYVKGALGVNLTFRK
GEDMRVRGYCDSGYASDLDKSRSFTGYVFTVVGNTVSWRSPLQKVVALSTTEAEYMALSDAVREGLWLKGICEEMKLSDD
VVDIHCDSQSAIYLASNFVYREKTKHIRTKYNFIREVIADGEVRVIKIHTSVNPADMLTKTLPGEKFDGCLAKLGVLEA
>Copia-16_Mad#LTR/Copia 36-4046 [Malus x domestica]
MEGSGTMIKLTNSNWVTWKPRMXDILYCKDLHEPIEGDAAKPESMSDAEWKKMNRKAIGTIRQWVDDSVFHHVSNETNAR
EFWTKLESLFEKKTPAKKAFLIKELINVKYKDGLSVAEHLNNFQNIINQLATMKMTIEDELQALLLLGSLPDSWETFVVS
ISNSASNGVLTLDNVKNSMLNEXTRRKTSGTDSSQVFVTENRGXSXSRGPRGHGRSPSRSKSRFRGACHHCGKEGHMKKN
CRVWKREQREGNNQKKDDTGNTTAVIXGDVPEILSVGECLHMGNSDRDIEWIFDNGASFHATSKREFFSTYKEGDFGIVK
MGNESYSKILGIGDICLRTNLGCQLMLKDVRHIPDIRLNLISIGTLDRQGYYHHIGEGKLKLTKGLMVVARARLCCTLYR
SNAKVLKGELNAVEDSSLDLWHKRLGHMSEKGLQVLAKKSHIPFAKGTSLNSCEHCLFGKQRRVSFSVXSTKKGNLLDLV
YSDVCGPMEVESLGRNKYFVTYIDDASRRVWVYLLKSKDQVFQTFQEFHAMVERETGKPLKCLRSDNGGEYTSHQFREYC
VKHGIRHEKTVPGTPQHNGVAERMNRTIMEKVRCMLRTAKLSKQFWGEAVRTACYLINRSPSVPLGLDVPERVWTGNDVS
YSHLKVFGCKAFVHVPKEQRSKLDYKATPCIFLGYGGEDFGYRLWDPYQKKFIRSRDVVFYEDQTIGDSDKEAQPDGAVR
GVDPLASDEESHDDIPEATANEVPAESDNADQEEPDQDVPDHEIADQGEPSQEEQIQGESNQGEPQAPQENEDQVRRSSK
SRRPSTKYSSSEYIMLTNYGEPETYEEARAHNDSDKWMKAMESEMDSLLKNNTYELVELPKGRKALKNKWVFKLKNDDNM
TRYKARLVVKGFGQKKGVDFDEIFSPVVKMTSIRVILGMAASMDLELEQLDVKTAFLHGNLEEEIYMEQPKGFEVKGKET
LVCKLKKSLYGLKQAPRQWNKKFNSFMVSNGYKRTHADSCVYIKQFSGGKFIILLLYVDDMLIVGQDAFMIKKLKEELSK
SFDMKDLGPAKQILGMEIIRDRKSKKLWLSQEKYVERVLERFNMKAAKSVSSPLANHIKLSKESCPKTYEEKEKMAVVPY
SSAVGSIMYAMVCTRPDIAHAVGVVSRFLSNPGKDHWEAVKWILRYLKGTSKMCLCFGGSKPILEGFTDADMGGDLDGRK
STSGYLFTFAGGAVSWQSKLQKCIALSTTEAEYIAATEACKELLWLKRFLQELGLKQSDYGVYCDSQSALDLSKNTTYHS
RTKHIDIRYHWIRDAIENKMLQLKKIHTDNNSSDMLTKVVTKSKLEFCIKAAGMDSR
>Copia-15_ST#LTR/Copia 71-4321 via tfasty with Copia-107_Mad, 63.0% SW:2550, 2 frameshifts and 1 stopcodon. [Solanum tuberosum]
MCPPATTGNNGTTGLPIPQLIQFNLTAQLPIKLQGNLNFATWKAQLVMLLNGHKLIRHLTGAKPAPPSTITHNDTTIENP
EFEMWFCQDQLIQQAMMTSVDPTIAPTVATASSAKLAxELLHMAYANRSHTRIFSLRDQLQNLKKANRSVANYLQEIRSI
ANALKVVGSPVADEELAVKILSGLGPEYREISAAIRARDTALSFEELFHKLTDQELFLKHQDLEKSSSTITAAVAQRTNF
QPQQYRNNRRFSNQSWKSSGQRQESIDNPQSGRQPRQAVKCQLCQKIGHTADVCRSKSHNHFEAKVNFVSNHRLNNHKNN
RRFSNQSWKSSGQRQESTDNPQSGRQLRQAVKCQLCQKIGHMDDVCRSKSHNHFEAKVNFVSNHHPDANPWILDSGATHH
VTTDSDNLDEYTGNEKVSMGDGKTILITHTGLTQIKASNANFMLSDTLCAPSIKKNLISVAKFCSDNLTSVEFFPYSFHV
KDLKTRRLLVRGRNKNGLYEWPHMRHNLPSINFTSIKVSRQLWHRRLGHPHLKILDFVLNKFSLPTSSKEKFEFCNSCSS
NKAHRLPFQQLTFNSNAPLQTLFSDLWGPSPVLSIDKKLYYCIFVDHYTKYIWLYTIKNKREVEASIFVDHYTKYIWLYT
IKNKSEVTTIFEKSHPLVEKIVKHKIASVYIDGGGEYMGLKHYLQQKGIEHLISPPYTPQRVAIAERRHRHIVETAKTLL
NEASLPPELWSFACHHAVYLINRLPAPGLNNESPYQKLFGKTPKYSSLKYFGCLCYPWLKPYTQNKFQPRSTPCVYLGVS
IVHHAHLCFDPVNSKVFVSRDVQFFETIFPFTTMFSQLKNKFSKINWEIIESHSEKTSKNQQTLDSNLVPTLLPPIPISL
SIPSSSSYPQDLNSSSNNQESMTEGQLPANLHQSGIFPISSSSSRLYNNLADATSTPALTHNHPSKISNQHPQNPPPTMN
TSSGVITRSKNNIFKPTQRFTFLAHLSPTPNTFKQAVKHNEWKKAMDLEYEALMRNQTWELVPREPTKNIVDCKWLFHIK
RKTDGSIDRYKVRLVAKGFTQCPGLDFHETFSPVVKPTTIRIVLSIAVQNNWQVHQLDVNNAFLQGNLQEEVFMAQPKGY
VNSDFPDHVCSLKKAIYGLKQAPRAWYEALTAYLNTIGFVKSESDASLFIFKSLAVTVYILVYVDDILITGNHPNLVAQV
INSLASRFSLKNLGELNYFLGIDMHSPSLEHWKAVKRVLRYLKSTTTSCLEIRHHADRNLYMYADADWAGDPSDRISTSG
HMLFLGPNPISWSSRKQQSVARSSTEAEYKSVANALAELTWVQNLLDELRYHISNTPSIFCDNIDVSYLSKNPVFHTKMK
HIAVDFHYLRNSVNSGKVTVKYLPSIDQVADTLTKPLPKPAFLRCLTKLGVVAPHLT
>ERV1-2_Crp-I_1p#LTR/ERV1 2002..5676[Crocodylidae]
MGAGSSRVENSSTPLGCVLRNFSKFTKQADYGVKMKKDDLIKFCQLEWPTFGVHWTPKGSFVVKEVTAVHGVVMQDGHWD
QFPYIDCWLGVVQDQPPWIKKCLVKSHVMVVKGKTRGGPPVLPESNEGGGILNGGGDPELAEYRARSPVTLTGSEDESDT
SSGPSPSAPPLPPSGKPPPAYQNIPNDSERVPQPSAPSESGNKGYNLRNTVESQPVLNCPMREVIGEGGDATFVYTPFST
SDLFNWKNQSPSFREDPEKMRDLFRSIGQTHRPTWADVQMMLQTLLTPEERRLVLGTAERIAAARVEAEGAAGRTLRDTC
PVEEPGWDNHTAAGRELSAQYLGIIVEAMGKAVPRVTNLSKLYEVRQGKEEDPSAFLGRLYEAFRRFSDLDPEAPDNQRM
VNLMFIGQSAADIRKKLQKTEGGAGKPISELVEIAYKVYGNREQVQERKEDKKAQRQMAALAAAITGGNPGKAGIQKGKG
GRVGADVCAYCREKGHWKRECPKLKEKREGEPRGHLMRAEEKGEDTE
>Gypsy3_TP_pol#LTR/Gypsy 1528-5247 [Thalassiosira]
DNGLSASVCLTDVERHTSSALLNESIGSKVSPKNNYYTTSSNSKSKSITNTNRPMKGTPTNLNVVDKATLIQMNPDDSES
TSMNTKATAVLAVPISAKNAAKYSDPRRMGGKVVKLWRVLLDSGSDGDIVFIQKGSNYVSTKRRISSQRWRTSSGTFHTD
KVGDVDILLPEYSNSKYISVKADVVEYDGTRGDQKPTYDLILGVNTMRELGIVLDFDTLKITIDKITLPMRDISSLQRTK
DCAKIYENSFFLNYFDTAYEPNSTKEMTNRAVEILDAKYEKADLQKIVDEYCSHLTKDQQIQLLRVLEEFEELFDGTLGD
WKTSPVQFELKQDAKPYHGKAFPVPFIHKETLMKEVQRLVDLGVLIPQNDSEWGAPTFIIPKKNGTVRFISDFRELNKRI
KRKPFPIPKISTVLQELQGFTYATALDLNMGYYTIRLDPDASKLCTIILPWGKYSYARLPMGVAGSPDLFQSKMSALMAN
LEYVRTYLDDLLILSKGTFDDHLEKMVEVFERLREAGLRVNAAKSTFATDEIEYLGYILSRAGIKPQPEKVQAILAINPP
KNVKELRKFLGIVQYYRDLWEKRSAMSAPLTDLVGECGVTKTTKQKGTVKAPWYWDEKHQQAFENVKAMIARDVVLAYPN
FKEEFVIYTDASKRQLGAVITQNNRPIAFFSRKLSEAQSKYSVTELELLAMVECLKEFKGMLWGQKITIHTDHVNLMRDA
LGLSSDRVYRWRLLLEEYAPKIVYIKGEVNTVADAISRLEYNPEINPDRKCFYSDKTKKYLFFGESAVSTDHRCMAITKL
LVDYTNVSNEKSNTSHINDVFANRSEEEEYYPLTVSEIAESQQNDTGLQEDLRKSKRHLALRVIEGTEVIVYKGNRLYIP
KDLRKRAVVWYHHALQHPGHTRQEETMSATMYWSGIRTDIRKHVKSCVNCQKNKNSSQQYGKLPEKEPATIPWEWLCCDL
IGPYTLKGLDGTVVDFMCLTMIDPATGWFEVVELPLTDVVSEKGDVSEKFDKTSARISRLINQCWLSRYPRPRYVIYDNG
SEFKLHFERLFDDFGVKRKPTTIRNPQANAILERIHGVLGNMMRTASLDMAETVTEDAVEYFLTDASWAIRSSHHTVLKA
SPGAAIFGRDMLFNIPFIADWEQIGLRRQARIIKDNKRHNKDRIDFDYTVGQKVLLRQDGINRKAAEKFTGPYEITQVHT
NGTVRIQRGTVSERLNIRRIKPFFEKDGEIMQTIKQRKR
>Gypsy3_MH#LTR/Gypsy 58-3468  [Meloidogyne hapla]
MALLSSVKKWWKSHECKEFSEQSSDILHMRISEKPKWLTKKVLVNGSEVEFILDSGAQITCVSENTWKCIGSPKLIGMPC
KGKSFTGNQFKMLGSFIASIEVDGVQEVLETHVTSENWNLFGLPWIIEFESKLNYPIVSSIKKSIEPFEVLKIEKDESEI
SEIVKRLSVKFKKVFEEGLGHCTKMKAHLHLKPGVKPVFVRPRPVPIGVKDAIEKELNRLSEMGAIKPIEFANWAAPILA
IKKANGKTRVCMDYSTGLNNAIELDRHPLPKPSEIWAEIHGSKVFSQLDLRDAYLQIELDESSKKLTCINTHKGLFEVQR
LPFGVKSAPGIFQRFMDKLISGIPGVFAYLDDVIIVSRNIEEHKVRLFEIFDRIEKWGLKIQLEKCNFFKEKLKFLGHIV
SKSGIEPDPEKKKKISDLARPKDVKELKSFMGTINYYGRFVSEMHKLRGPLDKLLKKEVKWEWSKEQEDAFQSVKKVLSS
NLLLTHFDPELEIIVTADASNYGVGAVISHRFPDGKEKVIEYASKSLNAAEKNYSQIEKEGIALVYAVQKFHKMLYGRKF
VLRTDHKPLLAIFCKNKGIKVFSASRLQRWALLLTNYDFKIEFVRTDHMGMADTLSRLISESNTSEDKVIALVTKEESSE
DEDSVEESAKYVLNIMLNEIPVNNEVIKSETEKDTELSVVKSYIKNGWPKLMSEPKLNPWSNRRLNLEVIEDCIIFNGKI
VIPKSLIKSVLKVLHETHPGVNKMKGVAREYMYWPSMAKDIEEYVGDCLKCQAAAKKPIKAELRPWPKTDRNWERVHIDF
AGPCKDGKLYLIVIDANSKWPEVFGNMTTSAKDTIKCLEWLGTHYGYPETIVSDNGSPFRSNEFKVYCENRGISQVFSAP
YHPQSNGQVERFVDYFKRMMIKNSGKKDWLQEVLLFYRASPHVALEGKSPAEVFLGRKLRLKLARLMPRKVNIRNSDRTL
QQLKMKKWFDSHHGVKNRKIEKEVHFLNYRNGRSNWLQGEVIKKTGVIYKIYSPVLNAIVTRHENQIRNKSVSSKSEELP
TWWRNSENNFSNNSNIVKKPEYRQNKYQLRTNIKPTQRLVVTRDSVKKYAEAPVYTVPRTFQGSISSGPDHNSSVAGTSK
RGHDENDKDDNKMMSC
>Gypsy4-SM_p1#LTR/Gypsy 643-1638  [Schmidtea mediterranea]
MMNKDNLQSEKAIMIMSRINKLIELRAAETSKIITSLLELSQVSLSVQRLKSVIELCTDYYEVNSKDRDEITNMMKVFGK
AFRENKWLDFIFIDVVDESRNSVICIRCEIGDYIKDLKDRLKENNGRQIIKVKFKNRYLEDDEILIDCGFIPGNKNKLQV
ACMIREEVAEKSDSQEITRDLRDTLSDWYGVKITEKLKLIDKIELEENAKLEIVNIIRPYLYDKSRYGEKLKCLMRRFGR
ELRETRMELKPFIIAIGYEDWGKTEYIEEHWCAKVQKLRKRAVNRIGNDGIIILMFKGEELDDDEYLYECGFKPQELDKN
GYIDSNERQFI
>Gypsy5-PTR#LTR/Gypsy 23-4421 via tfasty with Gypsy1GM, 2 frameshifts and 2 stopcodons. [Populus trichocarpa]
MATNKERIEMLEAGLGGVQEGVQRIEMSMTGKMHQLEETINKLSEALLSSKALLSNKGESSHSNTNREGNSRSIHEENEG
NRQVFSSKMAKLEFPRFSGQDPTEWIxCVDQFFEFQNTPANQKISLASFHLEGEANQWWQWARRTYREEGRMMTWEAFEE
ELWARFGPTDGEDFDEALSRIKQVGSLRDYQSEFEKLGNRVRGWTQKALVGTFMGGLKTEIAEGIRMFKPQLLKEAISLA
CMKDEQYERQRQFLRPTQVNRTPLSLPPATRATPNAPFRRLPWEEMQKRRAQGLCFNCNERFTAGHKCQGMQLLLLEGPT
GFNKITYEEVTEEADVEEATREIDEPEITLHALTGWSAPRTMRVDAKVGVFKAVVLIDSGSTHNFISTRMADRLRLPVVP
TETFTVRVANGARLQCQGKFEKVPVLLQEIPFSLTLYSLPLADLDIVLGVQWLEMLGSVICNWRTLTMKFYWENLDRQLx
GFTDQPIQAASLKEISKEFRQGHSVFAICPHSTMQDTKGVQSPSMSQVLAKYPEIFDEPTQLPPKREIDHTISLKEGIEP
VNVRPYRYAYFQKAEIEKQVQEMLNSGLIRPSTSPFSSPVLLVKKKDGSWRFCTDYRSLNAVTIKDRFPIPTVEDMLDEL
HGAAYFTKLDLRAGYHQVRVQPSDIHKTAFRTHNGHYEYLVMPFGLSNAPSTFQAIMNAIFRPHLRKFILVFFDDILIYS
PTWEMHLHHVTQTLDILKQQQFYLKASKCAFGKQELEYLGHIVSHQGVKVDSNKIEAMVAWPQPANISELRGFLGLTGYY
RKFVRNYGLIARALTNLLKKGQFSWNAEAEEAFQTLKKAMTTTPILAMPNFNDTFIVETDASGNGIGAVLQQQGKPIAFM
SRALGVSKCSWSTYAKEMLAVVEAIRVWRPYLLGQHFIIQTDQRSLKYLLEQRITTPEQQKWVAKLLGYDYEIQYRPGRE
NSAADALSRRPASPTLHNLFVPQLAIWEEIKHAATTDDYMAVVSNLVQTQPEGPFTARNGLFFFKGRIVVPSDVTLRNKL
IYEAHDTKIGGHSGVLRTFKKVATQFYWPSMHKSVQEYVKSCDTCQRTKSETLPPAGLLQPLSIPCQVWDDITIDFITGL
PLSQGKDTIFVVVDRLSKYAHFMSLSHPFTAKVVADKFVEGVVKLHGMPRSIISDRDPIFISKFLQEFFTMSGTKLKMSS
AYHPQTDGQSEVVNRCLEQYLRSFVHQWPRRWHSFLHWAELWYNTTFHASTGMTPYQALYGRPPPTLPEYFDGTTPVHEV
DQALLHRDELLLQLKQHLTTASNRMKQTADKNRRDVSFAEGDMVFLRLQPYRQSSAFKRAHQKLASRFFGPYPILQQVGR
VAYRLQLPEGVRIHPVFHVSLLKKYVGDATNTQTDLPPVSDDGGIILEPETILDHRWVKQGGKFITESLVQWKHLPPEDA
TWELTEFLCQQFPNLNLEDKVPLSGRG
>Gypsy4_gag#LTR/Gypsy 449-1705 [Drosophila fruit fly genus]
MQKRFSDSSLEDYIPSYREYKNRTMTQQESVQIDLHIRNCLAEQAQIFDQKIATLTEQLNALKATAPEVTAYKPIEIIPE
VRCEEPLDIVKSIPEFDGKQEHYISWRQAANAAYKVFEAYDGSSRHYQAVAIIRNKVRGSADAILASFNTVLNFHAIIAR
LDFTYSDKTPVHVIQQDLSTLRQGDQPLLKYYDEIERKLTLLTNKTLMTHDAASAAVLNDKYRNDALHTFISGLKKSLKW
AVFPAQLRDLQTALALAQEAESSNERSIFAANFARHIEEKAQKSGNQRSQGSRQNPQQESDAPTIFRKNPHYQKGNGQKP
NTSGSARQRYYQKPQESTSEPMEVDTSSRFRQPTQATNFKGGHSAKSRQSLNHMPQDQKTEYEEQAESEANAAEDDLSEV
ESCNFLGVTPCFRTSHVQ
>Gypsy3_gag#LTR/Gypsy 648-1993 via tfasty with Gypsy6_gag, 1 frameshift. [Drosophila fruit fly genus]
MSNSFRQYRNSKPFASDSESEGDDSTENSVHKNTAVNAFVAYKMSLETEQIKVLIRALQEQALEGQRREADLRNTVQELA
SQLAAMQVAPVRAETPQIKVYQPVDITGEVRCEETLDAVKRLPDFMGTQETYVSWRQAAKAAYHMFRNYENSSRHYQAVV
IIRSKVKGPADVVLSSFGTVLNFDAIINRLDFTYSDKRPIHVIEQELGTLRQGSMTLLQYYDEVEKKLTLLTNKATMSYE
ASAAKVLCEKFRDDALRVFVSGLRRNLTDVLFAAKPKDMPSALALAQEVEFNHERYTFATSFARSQEDRDRTQYPKVQER
QQAPPQANPQGSAGKNPRQHRAQVHSAPRSDRMARENTPEPMEVDPSLSRMQPSHAPAYPKSKPATSGRSIPPKRQRVNH
VAQASDYTAYATAASSAAVKVDDDAILEYDSDAINFLGVSPCYPSSDEE
>Gypsy3-SM_pol#LTR/Gypsy 977-4093  [Schmidtea mediterranea]
PKQQGSTSRGVGWSHILTENLMGYPQGAEKWENVGRVSEKVYRFLKREMFEEEVERIGTIETEQVVEILYNRMQGRPSIT
VRMNGENFDCLLDTGARINVMSVNCFNKLRGQQLTKSDDKLRCANESTIETIGKTKVQVTIGNVSKEVIFIVAEKVTPDV
IGGIELQETFGFRLLKIKDIEASEKDKNYICNIEAKFGRKIKDEERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDV
GRTHLVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVT
ERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGK
IKGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPN
CVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDAS
FDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPIT
SQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGIVEEVRK
KTMIPENELQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEI
IFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKM
LDIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKISREKWY
GSKEIPIKEELEEQTRRKFNVGEEVLVKVETRHKGQDRYEGPYKVIEKVHDRRYILRNEDGKRIERNVEKLKNFLRRG
>Gypsy3-NVi_gag#LTR/Gypsy 525-1112  [Nasonia vitripennis]
MWRNERRHFGSIVPMLGSCSSREFLRAIRFNLICTATTPSYPASTRRPSRKNVVKTLRILRNSPLDEFAEVADGIVETGP
ATFAVHPGNRKAFSPARAPAFVPEAAPPSSSADSRLLAEFAAIRISMAKIASATAKTLKAVQRMSSSSGHQGGQHQSNQH
GGRQSRSRSRAKSPTGNPSHCYYHQRFGHPNNQGN
>Gypsy3_CB_gag#LTR/Gypsy 716-2217 via tfasty with CER1_gagpol, 1 frameshift and 2 stopcodons.  [Caenorhabditis briggsae]
MDDLLESPTSSNGMEKSTLLQNPNESLVNELLNWEMPVPVQKETVSDDVEMKEVEDRKKAEKAEKAGGAERVEEGVATEA
EKSTKVRMVWEKQCCAEEDEEARKEALANLMKYAKGSLIHLEGILKPLDKRIEKKNGMIELKNSEIVEMKRINAILENEI
LDLQIDGNRLESPRRPDSTKVKKVTEExSRLLSWLKNMDIHALEDMKEIFRKTESIKKQKATLDELVNATETEKNWLQAQ
LTKQRQQWNEDKLKMRMLEERVRQYEEEDKWKVGNSQSNSYSRIGKNKESTDENSAKNGFQTQGDAFPSGPSTRRRMPME
DKCHMQGECGNSEELGERRERPRTMMEGVNLSYGAHGDESGREYEEEVKQGYYQSVWGQGRQTHHQVRTGGRLEDGAGAQ
TLPEPSVFSAEGKNPSLNAFEKAFTLKFGMCPEEHKVILLETKYLSGKAGKIFRGLxECEKTTVKKVFQALANRLRVSPA
DEAMRARNRWSRVLFHSVIWR
>Gypsy3_DR_gag#LTR/Gypsy 18-999 via tfasty with Gypsy-28_DR, 1 frameshift. [Danio]
MNPETPGSQQLLATVAQHESTIQRHENAFAQQQTLMVQHSQLLADLMASVRQLFDKVHVDSTPAPAAASIPLPESRVISP
MMEPRLPPPQRFSGDPSACDGFLKCSLTFELQPSSFPSDRARIAYVITLLSGKALSWATAVWKAKAPFCSNYKAFEQEFK
RVFDHPISGRQASKRLLMLRQDTGSVAEYAIKFRTMAAGSGWNNEALMVCFQNGLSETIQDELATREPSLDLENLMEQAI
RLDNRLRERYFNHPKPSFGVPTPAPTPTSQVSQFSAEPMQLGRTRLTPTERDRRMREQLCLYCGLSAHFRSTCPQLSGNA
QSRTGQE
>Gypsy3_CB_pol#LTR/Gypsy 3820-8387 wised with CER1  [Caenorhabditis briggsae]
NGQEWEKTVKIEPPRLTKVFAANNEPMTMTSLITVETSLQSRTREIAFHLTNVERDTIILGADQFEEMGIQMSIDSYPRN
IWLCRDVKIXADSQLIVPVQIEGVVKQEESYCLMSPRVQWLAPSVCQANSEGKALENLFNSSSTPLELKKGDVIAVGELE
GFDVVGDKAEHMEDEALDEYINSLGFHEQENAISINEISVTGNDRLKVICEQLKKGEVTPEEERVWKVVEEFQDTFAIDD
CELGKAEVVQCEIELKEGTEPIRQRPRPIPLAIRPEIKEMIRKMLKQGVIRESRSPWSCPVVLVKKKDGTVRMCIDYRRV
NKVVKNNAHPLPHIESTLQSLVGKKIYSTLDCLAGYWQIPLAEGSKQITAFAIGSELFEWNVLPFGLVTSRAVFQATMEM
VVEDLLGKCAYVYVDDLLVASETLEQHAEDLREILLRLRKSGMRLKAKKCHIARMEVEYLGHMTTPGGVKTEYLKVERML
NYERPTDKKGVHSFIGLFGHYRRFIWNFAAMACPLTPLTSSKREWVWGEEQETAFXDLKKALCSAPVLIQPDVEAAMTGE
NPFLIYTDASKKGVGAVLAQLGEDGEQHPILFMSKALTPAETRYHVTDLEALAILQALKRFKAIIYGAQIIVFTDHKPLM
YLLKGSPLSDRLLRWSLEFMEYNMKVVYVAGKANAVADALSRGGCLKLEIDDAETTDLIGSLEVEEGEESNELEVAKWFD
WLKEEEGWREVIQLLESGVSVGKVKVEGQKKKILVQNYMIIGGRLKNIEMEEKNRLVVPERERLKLVTQAHSGPLSGHFG
TDKVWKQLKKEFYWPTMRAFIEKFIKGCTKCLCVNDRPRLTAPLHPYETTSPLEIVACDLIDVGLSTLGNRYILTMIDLF
TKIATAVPIQDKCAETVMRAFIERWALGECRIPEMLLTDQGKEFANDHFKKFTQMMGIEHVMTKGYNSRANGAVDXNKTL
MHIIAKKAAVPMEWDAQVPFAVYAYNTTLHGTTRESPLFLMTGKDPKGPLQMAGVDADGISYVDIDEYKHLMTQELLKIH
KMARKNAEWERGRNKHLFDEKLKTEMRKYPQPGSRVLIEIPSEKLGARCPKLVNKWRGPYRVISCSENSATVTPILGKDK
EKKXVLVIPFDTMRVVPAEMETVPIVTVKERTNMRAVETYGNFVNELKQTENKVDCFFSELYSCRCPTICWFWPADAPNL
KTTSPTxLVRLVQLARQRKEVMKAKKDVAPEATSDVSGRPHQDRAEQLQWEQEAMLLSQGPHPDFNGLPDYEACMRLSRC
PSMMLVATTLPGWKDAFDFQRAQFLQKHFRSDLFKPKLFHCVRLPGVAEKEVPLSQKVFQINSKQEYVDAEGPKEIRKAK
SVLMVVPFTTEETEIESWNRYIQKVDSKVEIWLVPSPRMDLNAGRIVTFGNLLSQMQRGDGGPLHVFSPDDQNKEHPLWS
IAFNKNFRDYWRNVKAIADAKKLRWPGFHVDDKVDRKPEDAATASTSSSSRKIDRPTSSNCPRYQLYITTTMQKAGKGRY
QHQ
>Gypsy6_env#LTR/Gypsy 5561-7012 [Drosophila fruit fly genus]
FHRIGPTFCILLPLASAHVTDYSQARYIPVIDGEILVWEEFAYVTHTANLSEYGRVIEETTNMIDMFPLSHMKKLLSVDT
AHLQDLLESLGVHHRVARSLDFLGPMLKVVAGTPDSSDLEKIRFTEMRLVESSNRQIQINTKTQNQINQLTSTVNSILRS
AKTSQIDTGHLYETLLARNRMFMAELQNLMLAITLARINIVSPNILDHEDLETVWLEEPTDTPIGDLLSVSSVKVLQSRN
ILHFIIKFPKIKLACKKITIFPVAHGGTMLQIIDNVIAECSGEVYAIKNCSESPRATFCRLASESSCAKDLHAGGVAHCR
VQESDLHPITYVDEGIIIINDRSAKVRVDNGTEIWTHGTHLITFDKQATINDTLFINHNNTQKRAPGTASLPLLNITATQ
DVLSLPYLHRLSERNLEFIKEFREEIENQRTRLVAIIAGAICCALICIGLIFRRFTEARKSAGQVRQIIAELQTAEGGLN
SEG
>Gypsy21-PTR#LTR/Gypsy 6476-9838 via tfasty with OGRE_PS_pol, 2 frameshifts and 5 stopcodons. [Populus trichocarpa]
MDEEEWNKNDMKEFTRQIExSEHAWKPTKEELEVITVGTEQDKRELKIGTLITTEERCSLTTLLxEYMDVFAWSYADMPS
LDIDVVVHKVPLIEGCKPVKQKLRRTHPDMSIKVKVEIEKQWHAGFLEVIKYPQWVSNIVVVPKKDDKIRVCVDFRDLNK
ASPKDDFPLPHIDVLVDNAAKSSTYSFMDGFSGYNQIKMAEEEKEKTTFVTPWGTFCYKVMPFGLKNAGATYQRAMVTLF
HDMIHKEIEVYVDDMIAKSKNEEDHVQVLRKLFDRLRKYQLKLNPAKCSFGVKFGKLLGFVISNKGIEVDPDKVKAIQAM
TVPKTEKEVRGFLGRLNYIARFISQLITTCEPIFRLLRKKNPGTWDKDCQEAFDKIKQYLQNPPLLVPPVPGRPLILYLI
VTEAAMGCVLGQHDESGRKEQAIYYLSKKFTDCESRYTMTEKLCCALVWSTKRLRQYMLYYTTWLISKMDPLKYIFEKPY
LSSxIARxQVMLAEYDIVYKTRTSVKGSVIADHLADNAIKDYEPLKFDFPDEDVLIVEEDKEKNDWWIMYFDGAVNVSGN
GAGAVIISPNKKHYPISIKLxFECTNNTVEYEACILGLEAALEIKIKKLDIYGDSMLIICQVKGEWQTKKEKLIPYQQYL
SKLAEGFNEIDFTHMGRDKNQFADALATLASMAKTDYGIRVQPICIEIKNFPTHCCSIEGEVDENPWFYDIKRFIQYQEY
PLGASKADMKTLRRLAMEFYLDGEILYKRSSNGTLLRCLDEIEAKVALQEIHEGICATHASGHMMARQMQRSGYFWMTME
KDCIDYVRKCHKCQVYSDKINAPPAPLFNMTSPWPFAMWGIDVIGPINPKASNRHQFILVAIAYFTKWVEASSYAHVTQK
VVKCFIEKDLICWYGSPKKIVTDNAQNFNGKIIKELCVKWKIKHSNSSPYRPKMNGVVEATNKNIKKIIQKMVVTYKDWH
EMLPFALHAYRTAIRTSTGATPYSLVFGMEAVMPLEVEIPSLRVLIESEPEEAEWAKVRYEQLNMISEKRLAVICHHQLY
QRRMAKAYDRKVRPREFKEGDLVLRKILPLQSEDQSKWAPNYEGLYVVKKAFSRGALLLTRMDGDDLSRPVNSDSVKKYY
V
>Gypsy13_DR_pol#LTR/Gypsy 1897-6488 [Danio rerio]
MSIAEVTIANEKCSCLLDTGSQVTTVPKSFYEQHLSGYPIKSIDDILEVEGANGLSVPYEGYIEMGITFPEELLGVSVEI
PTVALVVPDVKAHNQSMVLIGTNTLDVLYKKYLSADPPKFQPCSYGYKVVLKTLEIRWRQNTSGVLGHVRLRSRAPKVLM
AGQTVVVGGSVSNPCRIDQTILVEHSPDSSLPGGVFVKRCLLNQPENQMNSIPVVLTNETNHNITIPPRCVIAELHAVDS
LQSLSKTSNSNGEGDFTLNFGDSPLPQVWKERISKKLREIPEVFSHHDLDFGHTQKVKHSIKLHDETPFKQRARPIHPQD
IEAVRRHLQDLLASGVIRESESPFSSPIVVVRKKNGDVRLCIDYRKLNIQTVRDAYALPNLEETFSALTGSKWFSVLDLK
SGYYQIEVDEADKPKTAFVCPLGFWEFNRMPQGVTNAPSTFQRLMEKCMGDINLKEVLVFLDDLIVFSDTLEEHETRLLN
VLFRLKEYGLKLSLEKCKFFQTSVRYLGHIVSEHGVETDPEKVQALKTWPVPKNLKELRSFLGFGGYYRRFIKDYSKIVK
PLNDLTSGYPPLRKGAKKCNKGSQYHNPKESFGDRWTPSCEEAFRTLIEKLTSAPILGFADPKLPYFLHTDASTKGLGAA
LYQEQDGQMRAIAFASRGLSHSESRYPAHKLEFLALKWAVTEKFNDYLYGNHFTVITDSNPLTYILTTAKLDATSYRWLS
ALSTFSFKLQYRAGKQNVDADSLSRRPQEPIPETAWSSKEQERIHQFVQHHHHDAADIVSAPNDVVHAICEKHLINQDAA
SGVALVGSLALRPDAIPDEYGEDCNLDGLPVMPYLPHEIGEKQRADSVLREVIFHLELGEKPSPTVRKEIPTFPLFLKEW
NRLELRDGILYRRRQENNLLTYQLVLPEELRPLVMSSLHDDMGHLGIERTVDLIRSRFYWPKMAADVERKVKECSRCVRR
KAQPQKAAPLVNFHATRPLQLVCMDFLSLEPDRSNTKDILVITDFFTKYAVAYPTPNQKAKTVAKCLWENFVTHYGFPER
LHSDQGPDFESHVIRELCEVSGIKKSRTTPYHPQGNPVERFNRTLLGMLGTLEEKDKAHWKDFVKPLVHAYNCTKHEVTG
FTPYELMFGRQPRLPVDLAFGLPHHGKSDVIPHSEYVKQLKSHLKESYLLASQGMLKTAEKNKTRFDKSVTHSSLEVGDR
VLVRNVRLRGKHKLADKWESEVYVVVKKAGDLPVYTVHPENSESPLRTLHRDLLLPCGYLPLSNSSNPSPPKMSRPRTRQ
NPGFQQPEEDCSFLSPEDEDYEWYGDNHQNVEPLQFSTVYDVPQPVKGKSVSLADESAGQNLGKDGTQCKEGTQNDNLPV
TPPVDNLPDDLPANDPPVYNAPVHSSVDNPSDDVLEVCETTETPGKDQPETDNSKDLPTQRESKVEEANDSENSVSCERE
EQQSEQEIPSLRRSARERDKPERLTYFQLGNPLSHVVQSLFQGLSTALVNSLNSVEDLGDSPITSDIPANIVTTQPLRAC
KGTCIVSRGE
>Gypsy23_AG#LTR/Gypsy 280-4356 [Anopheles genus]
MQPQTVASAGSSTPTASSSSGTNAKMANMCVFEPFNPVSSSFDRWMERLKIWFRINQIGDGDKKDYLLHYMGGPTYDVLC
NKLQNADPYTKSFDEIVALLRNHFNPAPLEILENFKFTSRKQLENESLSEYLMELEKLAKSCNFDSYLDKALRNQFVFGI
RNRGIQSRLLEVRDLTLSKAKDIAFGMEMSLRGTEEMHGTSPRCEVQQVTANTKKISSTNNGQQRKCYRCGDTNHMANRC
QHKQTVCSACGKRGHLQKVCLSRHNNRRQENTHYLEENDPKDVLHVSTVQNHAGKFLLNLRVNQGVLTFEVDTGSPVSLI
NIKDKQKHLKDIEILQTDLRLVSYSDNDIGVLGKLLVTVVVEGRKLVLPLYVTKSNKHPLLGRDWLRALNLDFNRIFKSG
THTVSYCDRDDECKYSALNALLQKYPSVFSKEIGKVKGIQASLTVREHTKPVYIKARQVPFALRDAVDKEINQFVNDGVW
ERVDHSEWATPVVVVKKAGGKVRLCGDYKITLNPNLMVDEHPLPTIEELFVTVAGGKTFSKIDLSQAYLQLEVRPEDRKF
LTLSTHRGLFQPSRLMYGVASAPAIFQRLMEEVLQGIEGVTVFIDDIRVTGPDSETHLQRLESVLQRLDKYNLRVNRDKC
DFFAKQIEYCGYMVDKDGIHKVRNKIDAIQNMPIPKNRDQVRSYVGLINYYGRFFPNLSTTLYPLNNLLKEDVPFQWTKE
CESSFKAVKKEMQSDRFLVHYDPSLPVTLATDASPYGVGAVLSHQYPDGTERPIQYASQTLNRTQQKYSQIDKEAYSIIF
GIRKFHQYLYGRRFILITDNKPISQIFSETKGLPTMSTIRMQHYAAFLQGYDYIVRHRRSSEHCNADAMSRLPTCTTDPM
NEIEEPDFIEVNAIETLPLTVDELSSATIADDTVRELLRALRMGKSIDAKFRFGIDQNEFSLQKDCLLRGTRVYVPPALR
KNVLKELHSTHFGICRIKSLARSYCWWEGIDKDIENVVKDCQSCQVSKANPPKTSFHCWNTPNEPFQRVHADYAGPFMGY
YYLILIDAYSKWPSVYVVNNTTTDTTIRVCREFFSTFGIPSVFVSDNGPQFTSADFTKFLKLNGIVHKLIAPYHPATNGQ
AERFVQTMKSKLKSLNCDRSQVHSEICNILLNYRKMIHPATGFSPSMMVFGRQIRSRLDLMIPSDDPERSEIQNKIRELT
VGSKVAAREYLHNNKWSFGTIKERLGKLHYLVQLGDGRIWKRHIDQLRSVGDNLPISTEDSILLRAEEPNSHTEDLTVTS
DLPSTQTPLTDTQSSTTNVSDSAHPTIQTVPVRSKVIQSSTSTECATFEGTSGSSGLTADSGLRRSTRTIKPPQRLDL
>Gypsy41_AG_env#LTR/Gypsy 5014-6573 [Anopheles genus]
NSYNGKKYQEEQKQVKENQVPVIRSFRFLYLSQAWRSKMQYFPITFMLILLTQLSQSKELEIIDLNRQPIFFLKTRTCRL
QTGSIKFIHPINMLTLENAINTITHFSYENINNELKEIVRLKVKLLYSNFQQLKPKHRTARSLEILGTAWKWIGGSPDAD
DLRIINTTMNELTENNNKQYRINKQFDHRLRTLTDTINQLTKEREQVMLNELETIKTIMNIDIINHVLEEIQEAISWTKV
SVVSNKILSSPEINSIKTILEDQGVKVELPDEALKLVQPIIAINSNSILYILKIPQLADEEATMLEVFPLSIDNRIIVET
PTHLIKTRNKVFKPAKPDEYIQNQYREYIDKCTSNLILGRKSDCSTARKNNTTIKLISDGLIIVDNAKGAALSSSCGPDD
KLVSGNLLIRFNDCEVTIMNQTFSSKTISSTVEPYWGAVSITEVRWQHHKPMIRQDAFENIGTMQHSYLQQFNSAWNWSL
LGGVLVSTIFTLSLAIFVFTFYKRSIRTIADVLPKIADA
>Gypsy28_AG#LTR/Gypsy 16-4179 [Anopheles genus]
MVDQASNAGNVPSTSSSIIPNAAAAAGTVPPPNFAMEPFDKRKSKWMRWVDRLETAFDIYRVTEERDKKNYLLHYMGTET
YDVICDKVAPAAPRDCTFQQIVDTLKDYFSPQPLEIAENYKFNSRRQGDKDAVTADESVDEYLVALRRLAASCNFGDYLE
KALRNQLVFGIKRGDIRDRLLEKRTLTLQEARDIAVSMELSRKGRTEIEGCSAKQEMHAVYQSKGKGWKPNKGVDKPSTS
TEKSNCYRCGDKSHLANACKYKNIICSFCKTKGHLAKVCFKKKKNEAHSTGSAAAQTNYVEQQGNDATIESTNIRDVCTV
GSSTHCKKLWLNMKVNKKTIKFEIDTGSPVTIISEEDQKRLFPDAQLRACTTNLVSYCNTPIDVCGILDVDVQLARHTLK
LPLYVAKTTKHPLVGREWLSEIPLDWNKVVADSKSVNKIESDSMCSVADCNALLERYPRVFEASIGRISNVQANLRLKEN
ARPVFIKARKLPFNMIKVVENELDKLVQEGVLVKVDSSDWATPIVPIKKSQNRVRICGDYKQTVNPNLVVDRHPLPSVDE
LFASLAGGKKFSKIDLVQAYLQLEVAPADREILTLSTHRGLYRPNRLMYGIASAPAIWQRQIESILQGIEGVSVFLDDIK
ITGETDEIHLFRLEEVLRRLNEREIRVNKEKCEFFVDQIEYCGYVIDAKGIHKIQKKVDAIQEMPKPRNKDEVRSFVGLV
NYYGRFLQNLSTILYPLNNLLKTDVPFQWNKQCEDSFKKVKEQMQSDNCLVHYSTELPLLLATDASPYGVGAVLSHIYPD
GSERPIQFASQTLNRVQQKYMQVDKEAYAIVFGVRKFFQYLYGRTFTLLTDNQAISKIFGEHKGLPVMSALRMQHYATYL
QSFDYKIRFRKSTDHANADAMSRIPLHITDPDNEIEESDSIELSQIETLPLTAVELEQAVAKDQQVQKLIQGIKHGRVVE
AKDRFGVDQQEFAIQKGCLLRGIRVYVPEILRRKVLDELHSAHFGITRTKSLARGYCWWPGMDQDIERMVANCTECQLIR
AEPAKMKLHCWETPSAPFQRVHVDFAGPYKDLYFFIFVDAYSKWPMVKVCKSITAEQTVNMCRELFSTFGIPSVLVSDHG
VQFTSTLFQQFLKMNGVVHKMGAPYHPATNGQAERYVQTIKNKLKALKCSTSKINLELCNILLTYRKTVHPATGKSPSML
VFGRQIRSRLDLLIPTQESSRKAEIPVRSFQIGARVRVRDFLSHDKWKFGKISARVGKLRYEVKLDDGRVWERHIDHIAE
VGADLRGTSAVNQESDLREQGDTTYFEEVLPSTSNANTAVTTSDSEITVENTPGSSDRDADRPVERNNDPGMERDLTPAP
VRPINLEEESVLRRSTRARKPPQRLNL
>Gypsy12_DR_pol#LTR/Gypsy 1475-6105 (1 stopcodon) [Danio rerio]
MQGTRGPQESKSKADQNASFAGKLGRSSVKERHGAPGTTRSNCDSFLLDASKPRLPEGLIGPVSEVPVQIEGVYAKALLD
SGSQVTLLYRSFYDTYLKHLELQPVENLEIWGLSSHKYPYDGYLPLRLEFTESVAGVHQIIDTLAIVCPDPVKREGIAIL
LGTNTSLVKKLLESCRKQAGEEFLNVLTIHPVIREAFETIQLTDFSQDDSDTHGTVWFIKHNPVVLKPNQVRQLPGLLKF
PGQSTESLVLVDRVADSDTSSEHLDVRPELHAASVVSSRQVTVTVRNMSNREIWVKRGTPLAHVLPVSLVPQLTAKQPPV
QNPLSPASFDFGDSPMPEEAKQSLREKMMQRKDVFSLHEWDVGCSKSTTHEIRLNDSRPFRERSRRLAPADLEDVRLHLQ
ELQSSGIISESRSPYASPIVVVRKKSGKVRMCVDYRTLNQRTTPDQYTVPRIEDALHSLSGSKWFSVLDLRSGYYQIPMS
DADKEKTAFICPLGFYQFERMPQGICGAPATFQRVMERTVGDMNFLEVLVYLDDLIVFGRTIDEHEERLLKVLDRLSDEG
LKISLDKCQFGRTSVNYVGHIVSQDGISTDPSKIEAVVSWPKPQTVTELRSFLGFCGYYRRFVKDFSKFCRPLNELLKGY
PSTRKNRDSLVCNTKPCYKSSEPFGSRWSAQCDTAFETLKKCLTQAPVLAFADVQKPYVLHVDASMDGLGGVLYQEHESG
LRPVAFISRSLSPSERNYPAHKLEFLALKWAVVDRLHDYLYGVPFEVRTDNNPLTYITKSAKLDAAGHRWLSALTTYNFS
LKYRPGRRNVDADALSRRPHTYRSEDDEWQEIPAVGVRTFCQAVSLEKRAENGFYTCVVKQAGAHMSAVPKAYSHVMEVA
ADHLPLFSSSDLQTAQRNDSLLGEVWKAVCDKKPASSIRSSHPSMKILKREWEKLVVNNGMLYRIVRQSNHKVKQQLVLP
KQFHSSVLKSLHDDIGHLGFEKSYGLVRDRFYWPHMKPDVESYCKTCERCIKRKTLPQRAAPLSHMQSSGPLDLVCIDFL
SIEADSRNVCNVLVVTDHYTRYAQAFPTRDQKASTVAKTLWEKYFIHYGLPTRIHSDQGRDFESQLVSEMLTMLGIKKSR
TSPYHPQGDPHLRDLTELCxMLGTLQPSQKSKWSQHIARLVHAYNCTVNEATGFSPYFLMFGREARLPVDVCFGVSADSS
SSGSYSKYVSKMKQELQAAYQLAQVSSEKMNQSNKARYDQKVRYHSLSVGDRVLIRNLGLKGKQKLADRWSENPYVVESQ
LSGIPVYRLKPVDGNGPIKVMHRNHLLPLGQEVRLKPKVDLGPTSLPKNLRHRSVKDKRKTAQSENPPIAVDVFSREHDS
SDSDSEYGCYVEDMAPISSESAQEIQGETPEQAVECLDYSNAHRVSEIPVIPCQSETSEFQLTDADRNTDVVDDVMTEVS
ESTSQTTVQTTDNETQPEIVPFEVRRSNRERKPSTRFTYDKLGVPYLHSVSSKCCGINALTTDVLNVYGSLNKSHAWWCN
PNALCKTCKNRPVLVPCKQMVAM
>Gypsy8-PTR#LTR/Gypsy 33-4505 [Populus trichocarpa]
METRNKSNTEFRNEVTEALAQHASQFDLLKTQHESRFDLLNTNMTQVTSSLQNLQNAISELQTLSLRHSSNQQTIIQDVN
SFTKGETSQKGRQPTSACSFTSTGFDRSHQQLKLSFSKFSGDDPTGWVYKAEQFFEFQNIANDQRVQLASFHLEGLALQW
HRWLTKYKGTLTWLEFTAALLQRFGPTEYEDPSEALTRCRQVTTVTAYQEAFEGLSHRVDGLPEPFLVGCFIAGLRDDIR
LDVKIKQPKTLGDTIGVARLVEERNLLQRKGNTFVRSPANSRPLPTTNSGVLGPPPASKPVSTAAPSSFRRITNQEARER
REKGLCFYCDEKFIPGHRCQRPQLFMIEDSTPEEIDTSDDCTVDVATVESFPEISFHAIAGTEHPQTIRVLGKLKNKDVT
VLIDGGSTHNFIDQSIVSQFRLQEIRDKTFQVMVANREKIVCGGRCLALSILIQGHVVIADFYVLPVAACHVVLGVQWLA
TLGPIETDYRNLTMTFTDGGTKRMFQGIGRAGLEALSNKDLFNLQQTGLFLQITMTEHVDSTTTYSSDLAAVLDNFAHVF
DTPTALPPNRSHDHRILLQPNSEPVSVRPYRYPYYQKTEIEKMVKELLESGLVRPSNSPFSSPVLLVKKADGTWRFCVDF
RALNHITVKDKYPIPIVDELLDELHGARFFTKLDLRSGYHQIRVQESDIQKTAFRTHEGHYEFVVMPFGLTNAPATFQSL
MNDLFRPYLRKYIIVFFDDILIYSKNWDEHISHIISVLTILSSNSLYVKKSKCQFGVSLVNYLGHVISEKGVEVDPYKIQ
AVVDWPEPTTVKGVRAFLGLAGYYRKFISGFSNIAAPLTHCLGKEGFRWGITESTAFNKLKQALTSPPVLRLPDFSQRFF
IECDACGTGIGAILIQQGQPIAFFSEALKGSSLALSTYEKEMLAIVKAIRKWRPYLLGRPFTVRTDHKSLKFLLEQRITT
PAQTRWLPKLLGYDYVVEYKKGPDNKGADALSRKVEFNFMAVSLPQPDWWIRLQQEVQQDSFYTDLFKLNSGQQRQLYTC
KDGVWFKGGKVYLNPSSPLIPSVLADHHSSPIGGHFGYHKTLAKIRGTFFWPKLRQHVKDFLRRCDTCQRFKADCLSPAG
LLQPLSIPTKIWTEVSMDFVEGLPPSLGNTVIMVVVDRLSKYAHFIALKHPFTAITVAKSFIANVVKLHGIPVSIVSDRD
KVFLSSFWKTLFQLQGTQLNMSSSYHPQSDGQTEVVNRTLEQYLRCFTGDQPHKWVDWLPWAEFSYNTAIHSSTKISPFE
AVYGIPPPNVLSYVPGTTRVQAVDEYLRDRDSVLQDLRHQLVLARDRMKTQADKHRREVHFTVGDFVYLKLKPYRQTSVA
FRRSIKLAPRYFGPYQVLAKVGEVAYKLALPAGSQIHDVFHVSRLRKCLGSVVPVSRELPPVSVTSIILPQPELVLDHRV
ICKGQYRPKKEVLIKWKGAAVEDATWENLWRFMKTYPDFILGDKDTLREGE
>Gypsy7-NVi_p3#LTR/Gypsy 12680-13387 Contains probable match to ERVK pro  [Nasonia vitripennis]
MQRYLLSFIPLCYRKMDHNKIDILDVTDMGNSKVLIKFKGQKEDAMNSFMTHGPCVIAFTPTATPNMYIANIEYAKEENK
IRVIKTYTKSKSQSIMEKMGYIEGKGLGKDLQGRTDPVKAVPNEYRQGLGATNLNYYSVHNDTNFVIEQEQGPPTIIEEP
GEVMRVSKISEKSISISIRGNPDDIKANLKQFGPCEIEKVYTDQQGHTKLVVRYQIPLHNKKAVEYATAIIKKKP
>Gypsy10_Dpse_pol#LTR/Gypsy 54-3140  [Drosophila pseudoobscura]
MKSDSVKVEGSLYSLGSKNPEHADEELSVNSLGFKYPEPAVVELSDIQSFNSLGLKYPEHAVVELSDIKSSNSLGLKNPE
HAVVELSDNEQFKSLGCKNPERAVVEISDIQNYANSELKKMKLYNTITYKEDNLENLREQMVSIIEEDHANINLQLPFRT
DIKGEINTEHDRPVYGKQYPYAYSVNDFVNNEISKMLDEGIIRPSKSPYNSPVIVVPKKGVNEDGTPKHRLVIDFKKLNE
NTIPDRYPMQDPSVILANLGKAKYFSAIDLESGFYQILMRESDIEKTSFSINNGKYEFLRMPMGLTNAPRIFQRAMDDIL
REQVGKTCHVYMDDIIIFSKTIEQHYKDLIHIIQILQNANMKISLEKSKFFQLETKFLGYIVSQNIIKTDPDKISTIQNY
PIPKSIRELRSFLGLTGYYRKFVRNYATIAKPLTKYLSGVNGKVSRRASKKTLIQLDEPAIGAFNNLKDSLIAHIELVQP
DYNKKFTLTTDASDIASGAVLSQDGNPITFISKTLSKTEQLYATNKKELLTIVWALKNLRNYLYGVSGIEIHTDHKPLSF
AMSQKNPNVEMKRWFYFIESFTPKIIYKPGSTNVVADALSRIKINHMTDSDVDQTESESDINTQHSAESSFENVIQETSK
PLNQFKQQLLLAQGRFTVHELVRVYENTRHIIEFDTVDNLLIILKEFIQPHLTTGIHCTLEDLYLIQNKLKENFINKFLF
TRKFLQDVVNSEDKAIIIEETHCRAHRGLDENYKQITKLYYWPNLHKKLKEYIKNCEICNKNKYQRHPVKIPIGEAPIPA
KEGDQLHLDIYYAQNLTFITCIDSYSKYLVVKEIQSKLNIENKVMEILQHFPLATSLMTDNEPSFTSAQFRSFIQRSNLT
IYYADPRHSTSNGQVERVHSTLTEIARCIKDELNLTDYSEIIIRAALKYNLTIHSTTNQMPYDILYNKIEHKHNPILLKE
AQTKMLKLHNKDRREKDYKIGEVVYEKKFGERNKLQSRYKKQVVKENRPNKIIINNRNRIIHKDNIKY
>Gypsy11_VC_pol#LTR/Gypsy 2054-6093 via tfasty with Gypsy4_VC_pol, 1 frameshift and 3 stopcodons. [Volvox carteri]
EIAHAVASGSSCGEPMDIEELTRNPPTVDCSNCVLHSVFLRLQKASGRVFMIDASCNVRSDNSLCPNFACPDSFTLHDLS
GQHIWCNAPADCAIPWLNNYSTLKQRAPDTTSAVMLVPKCAHLETEFQTRGWTLLKEFTSNSRIFSEPKPGGGRTRSQNC
SGEFQAWLDPCQEKSKCSALEPLTENTALLLPCNFTSTKAVALVDSGALHVFVSAALVQKLGLQPLTSHVATxVLGDGAN
SVCLQGQVHMSLRIQGFRCEIVAQVIPKLADGIDLILGSRWMREHSALLDCWTGHLYSDAPWPLISATEPQQGVAVMNYV
TAVLHAATSPSANLVSLKQIKKLQKQGASCYAAFITSDDIAQLNAMDATTATPSDPTLVSPDKLEELLEEYKEVFEPLTG
LGPDLGTGHTIELEPGKKPPYSxPYRLSQLEQTELKKQLADLLAKGFIEESKSPFGAPVLFAQKKDGSLRMCLDFRALNK
ITVKNRYPLPNITDLLNKLQGASIFSSLDLQSGYHQIRITEEDIPKTSFITPFGTFQYKVLCFGLTNAPATFQKVMNTVL
KKHIDAGYCVVYLDDILIFSKDPSSHLEHMRAVLESLKGARFRAKREKCELNKPEVNFLGHIVGREGLKVDPRKIEAVKN
YPVPKDMTALHGFLGLANYFRKFIQGYSSLANPLTALTGSKRLTEWTDTHQQAFDGIKNALANAPVLHLPDFTKQFEVVT
DASIYGTGGVLLQNGHPVAYTSKKFTPAEINYTTTEQELLGTINALQEWRLYLETAQDTFTLVTDHQPNIWFETKKDLSR
RQAWWQEFLCRFHYTWQYRPGRKNVADPLSRIHTPPTAVAALRYIGMPTDGSPTEPTLADRLKAVMPDKPDADWGTASFT
DGMWFKGNKIIVPNDPQLRKDILHAYHDASLAGHRGVAKTLHTVAERFWWPGMYSAVERYVHECPQCQRNKPDNQKPAGK
LQPLPTPMGPWQVVSCDFITSLPQTPSGNTAICVFVDKFSKMVSLVPTTDQLTTIGFAKMLVNHIICKHGRITALLTDHD
PRFTAQAMRNAAKQLGVKQLMSSSFHPQTDGQTERANRVLQEVLRNYVGPDLTDWEDWLPKAEFAINNSKNESTGQTPFY
TVYGRTMSLPHDHDLPLQQSKYPAADEIADSLTQWVTLATKCLDAAKQRQAKYANKARRDAQFEVGQHVLLSTKNFTFRA
PNTKGLGKFMPRYIGPFPITAKVGEAAVRLQLPAHLRMHDVFHVSKIKAYKAGSNAPPPPAIPAAEGEPLWYVDEIHAHR
QSRSRRRITTEYLVRWHKLGPEYDSWESAKDCNQGCPEAIRAYHGKLYAKGVPLPxTSTSPKAPRGR
>Gypsy11-NVi_pol#LTR/Gypsy 2178-5203 via tfasty with Gypsy70_AG_pol, 1 frameshift.  [Nasonia vitripennis]
MESKKPVRPADLEAVCQGHSSKRLHIQDLISGQFFLIDTGADISLLPAVNNISCKPDSLKLSAANGTKINTYGESYRTLD
LGLRRPFAWNFCIAEVPSAIIGADFLSHHSLTVDLASRRLVDTQTNISSAATLRAAPLVAISTISPNSEHAQLLAEFQRS
LVPLEPGLSGKADVYHHIYTSGPPVSQRPRRLHPDKLRAAKAEFRAWQEAGICRPGSGPWASPLHMAQKKDGSPRPCGDY
TGLNAITIPDKYPTSHLYDCNNNLHGKKIFSALDLHKAFNQIPIAPEDIEKTAIITPFGLFEFLFMPFGLRNASQTFQSY
INRALGDLDFVYIYIDDILIASDSREQHQKHLRTVFERLKKFHLRLNVDKSVFMVEELEFLGYLINSQGIRPTRAKIDAV
LNFPKPRTIVELRRFLRMVNFYHRNLPHAATSQAPLNAFFRDSRKNDKRLIQWTPEADEAFEKVRSEFAEAALLVHPRSS
PSQQRYSAYDRELTAVYEAIKYFAHIVEGCDFSVLTDHKPLIYAFLQKTDKAPPRRVRQLNYISQFTTRIEHVRGIDNTV
ADSLSRIESVRFPLEFDLEELAAAQEADKQLQEIRESPEHSLSLKRIQFGPNHTTICCDLTGETLRPFVPVSMRESVFAF
FHKPAHPGPKVTDRLIRQRYVWPAMHRDIANWCKLCLDCQQSKISRHVKLTPSQFVAPDGRFDHVHIDIVGPLPIKDGLQ
YVLTMIDRFSRWIEAVPLPETSAQTVARAFFDTWVARYGAPKVITSDQGSQFESQLFSALLSLIGCERIRTTAYHPAANG
MIERWHRCMKAAIMCHNDTDWPRTLSTVLLGLRCHLRADTNASPAEFMFGTTLRLPGEFFIPEDQTPDPNFFLEEYREYM
RQIRPIPVAHNYKKRAFYFKDLYKCTHVFMRNMAKKSLERPYSGPFKIVKRVSDRVFDIDVNGTTKSVTVELLKPAYYIP
DDLGELVPSDSTNGNQPLSNPSDKPSCNPSNTSRPALKTYARKKVSFAS
>DM412_gag#LTR/Gypsy 1301-2656 [Drosophila fruit fly genus]
MDWEKLVDQIKDQNENFRKSYKCLTQNRSTQAVTINRNAQVLVNSYNEIRELIQQNRKNLERKQCAKALNLLVTLREKLI
FIKNKFSLQIEIPTIVNTPLRINLNEDSTNSDEEDRTIVKEDIKEEDLHDLTIPAKLMLKNDDKTNNAADSENNLTMAEE
AAAIRSYIREVACTVPEFDGQKIHLQRFIKAIKLVDLAKGPFEDIAVEVIKSKIVGTILNSVDNETTIPAIINKLQKVVV
GETSSNVKAKLATVQQRGKTATQFTAEVDSLRKLLEASYIDEGIPLEHATGLSTKEAIETMIHRAEHESIKTVLEAGTCT
TMDAAISAYIRTSTRVTGDINKVMYFRGNRPNRGYGNANRGSNRRRGFNNNSIRGNYHNGYQNNGYQNNGYQNNGYQNRY
NGNNNRYNGYNRGRYNGNRGRNNSQNNYNRNNANVRVIQEQGNSQQPLGTQ
>Diaspora#LTR/Gypsy 874-6549 [Glycine max]
MTRGNPSDLQPFDPEIDRTFHRLVRHHFIPFDHSEHSITGESVHSVIGDFEHPDLEHYNFEHSDSEHSDFEHSENMAQPP
PRERTLREMAAPDFTYESLCIQYPDEDVPYVLKTGLIHLLPKFHGLAGEDPHKHLKEFHIVCSTMKPPDVQEDHIFLKAF
PHSLEGVAKDWLYYLAPRSITSWDDLKRVFLEKNFPASRTTAIKKDISGIRQLSGESLYEYWERFKKLCASCPHHQISEQ
LLLQYFYEGLSNMERSMIDAASGGALGDMTPAEARNLIEKMASNSQQFSARNDAIVIRGVHEVATNSSSSSETKKLEGKL
DALVNLVTQLALNQKSVPVARLCGLCSSADHHTDLCPSVQQPGAIEQPEAYAANIYNRPPQPQQQNQPQQNNYDLSSNRY
NPGWRNHPNLRWSSPQQQQQQPAPSFQNAAGPSRPYIPPPIQQQQQPQKQPTVEAPPQPSLEELVRQMTMQNMQFQQETR
ASIQSLTNQMGQLATQLNQQQSQNSDKLPSQAVQNPKNVSAISLRSGKQCQGPQPVAPSSSANEPAKLHSTPEKGDDKNL
PNNFCAGESSSTGNSDLQKQHIPPLPFPPRAVSNKKMEEAEKEILETFRKVEVNIPLLDAIKQIPRYAKFLKELCTNKRK
LKGSERISMGRNVSALIGKSVPQIPEKCKDPGTFSIPCIIGNSKFDNAMLDLGASVSVMPLSIFNSLSLGPLQSTDVVIH
LANRSVAYPVGFIEDVLVRVGELIFPVDFYILNMEDGFSQGSVPIILGRPFMKTARTKIDVYAGTLSMEFGDITVHFNIL
DAMKYPSEDLSVFRAEIIDHVVDEYMTDLYSNLHASHSSCIESEIVLDHMSEFDAESESEIDIDCMSGGGVLPLEIDFIE
SDRTNHVSGSTHTSDFLYEVKAEKPSPSTTIQPTTPELKPLPSNLKYAYLDDSKSFPVIISASLADEQEEKLLSVLKKHK
KAIGWTLADIPGISPSTCMHRINLEDGAKPVRQPQRRLNPVILDVVKKEITKLLQAGIIYPISDSQWVSPVQVVPKKTGL
TVIKNEKEELIPTRVQNSWRVCIDYRRLNQVTKKDHFPLPFIDQMLERLAGKSHYCFLDGFSGYMQITIAPEDQEKTTFT
CPFGTFAYRRMPFGLCNAPGTFQRCMISIFSDFLENCIEVFMDDFTVYGSSFDGCLDSLEKVLNRCIETNLVLNFEKCHF
MVEQGIVLGHIISNKGIEVDPAKISVISQLPYPSCVREVRSFLGHAGFYRRFIRDFSKVALPLSNLLQKEVEFDFNDRCK
EAFDCLKRALTTTPIIQAPDWTAPFELMCDASNYALGAVLAQKIDKLPRVIYYASRTLDAAQANYTTTEKELLAIVFALE
KFRSYLLGTRIIVYTDHAALKYLLKKADSKPRLIRWMLWLQEFDLEIRDRSGAQNLVADHLSRIERVSDADSPIRDDFPD
DHLYILYSISDSLSTPWFANIVNYLVASVFPPLASKAQKDKIKSDAKHFIWDDPYLWKLCSDQVIRRCIPDHETDSVLQF
CHSSAPGGHLGVQRTARKVLDCGFYWPTIFKDAWKICSTCEQCQRAGSSLTWRQQMPQQPMLFCEVFDVWGIDFMGPFPV
SFGFVYILLAVDYVSKWVEAKPTRTNDAKVVVDFVRSNLFCRFGVPRAIVSDQGTHFCNRSMHALLKKYGVVHRISTPYH
PQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHRTAYKAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNF
SMDQAGEERKLQLSELDEIRLEAYENAKFYKEKTKKFHDSMIVKKDFMVGQKVLLYNSRLGLMSGKLRSKWIGPFVVTNV
FPYGTVEIKSDSTNKSFKVNGHRLKPFLTNPSLVDVVVEETSLLHPTLPPP
>GmOgre_orf1#LTR/Gypsy 869-2734 [Glycine max]
MGTNQTGKRFYQVKVKSLDTTSIKELGRLMEPLQMQAFRKTYGKILELTIAEVSIEAIASLTQYYDQPLRCFTFGDFQLV
PTIEEFEEILGCPLGGRKPYLSSGCLPSLSRIATVVKDSARGLDRIKQTRNGIAGLPXKYLEDKARGMANQGDWVPFMDV
LALLIFGVVLFPNVDGLVDLAAIDAFLAYHHSKESPVVAVLADLFDTFDRRCEKSSARIICCLPALCVWLVSHLFQQDTR
HPCPLLSHRSCTEKRRIDWDQLLAGIGGRTIXWFPRWKEGKEGVLFSCGXYPNIPLXGTRGCINYNPALAIRQLGYPMRG
APTEESMSPFLVRDXGAQNSKTIQRIHKAWETPLRKDQELRGIRNGIIGGYHEWLKVHIRGLDWLAKLKVVSEEXFEAPE
EDEEVQALKSELGKAKLAKEKFKLAATHVRKECAGLREENAITARALEQETKRARKEEYGRNKFRGALWGSNSELKLRRE
ERDQSRAHSMVLKEELXACSRSKRSLSQRLCETETNMLAIIAKYQEELGLATAHEHRIADEYAQVYAEKEARGRVIDSLH
QEATMWMDRFALTLNGSQELPRLLAKAKAMADTYSAPEEIHGLLGYCQHMIDLMAHIIRNR
>Grande1_ZD_p2#LTR/Gypsy #ReverseORF 8838-10253 R) [Zea diploperennis]
MTGHFLKRYLAREYPLRAALLAAFAFRALVLAFPFPNPLPFASALLAGRIEMAPKRKTASSSAVVIPPIDPNSQLPFAGN
HMSIISETELLHLVSIGVLPPRELCSWRIFHGFTVPIEDTHESVVYAPFLLRGLGLPISPFFRGLLDFYHINLTHLNPNS
IMQISIFVHLCEAFLGVLPHFDLWKYLYHCRPGMVGGQHQLVGGASLEMRRERKIEYLEIPLKDSIKGWHLEWFIVENYG
NSLPSRSGRQPDVRTPSWTESPTDQEVAEASVLLTEVGLLKERGLTAEAVVTDFVFKNSQPLKDRAYPAYLYRGLADSTP
VTNRRIPSADLVSRLEMILRGKVSNVGAPVAYSAWNLPPPKAFTLFVSNPPITDGSLGLRVRPSAEEVSALVALLGEIPD
DERQVHFEVPLNPSDADINAMLDLLAEDSSDAAPAGALAVVPLPELIRLWMLRNVSVLSRPPWRTITGTFR
>GmOgre_pol#LTR/Gypsy 6813-10196 [Glycine max]
MNQTEDEGBEDVGLPXELERMVAHEDQEMGPHQEETELVDLGIGSGKREVKIGTGITAPIREELIILLKDYQDIFAWSYQ
DMPGLSSDIVQHRLPLNPXCSPVKQKLRRMKPETSLKIKEEVKKQFDAGFLAVARYPEWVANIVPVPKKXGKVRMCVDYR
DLNRASPKDNFPLPHIDILVDNTANFALFSFMDGFSGYNQIKMAPEDMEKTTFVTLWGTFCYKVMSFGLKNAGATYQRAM
VALFHDMMHQEIEVYVDDIIAKSKSEEEHLVNLRKLFERLKKYQLRLNPAKCTFGVKSGKLLGFXVSQKGIEVDPEKVKA
ILEMPEPRTERQVRGFLGRLNYIARFISQLTAICEPLFKLLRKNQTDRWNEDCQEAFGRIKKCLMNPPVLMPPVPGRPLI
LYMTILDESMGCMLGQHDESGKKERAVYYLSKKFTTCEMNYSLLERTCCALVWASHRLRQYMLSHTTWLISKMDPVKYIF
EKPALTGRIARWQVLLSEFDIVYVTQKAIKGSALADYLAQQPLNDYQPMHPEFPDEDIMALFEEKLDEDRDKWTVWFDGA
SNILGHGVGAVLVSPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSNVKLLKVYGDSALVIHQLRGEWETRDPKLI
PYKAYIKELAKTFDEISFHHVPREENQMADALATLASMFQLTPHGDLPYIEFWCRGKPAHCCQVEEERDGKPWYXDIKRY
VVSKEYPPEIADNDKRTLRRLAABFFMSGXXLYKRNHDMTLLRCVDAKEANHMIEEVHEGSFGTHANGHAMARKILRAGY
YWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSAPWPFSMWGIDVIGAIEPKASNGHRFILVAIDYFTKWVEAAXY
TNVTRXVVVRFIKXEXICRYGXPRKIITDNGTNLNNKMMXEMCEXFKIQHHNSTPYRPKMNGAVEAANKNIKKIIQKMTV
SYKDWHEMLPFALHGYRTSVRTSTGATPYSLVYGMEAVLPFEVEVPSQKILAESGLEESEWAQTRYDQLNLIEGKRLTAM
SHGRLYQQRIKNAFDKKVRPRKFNZGDLVLKKISHAVKDNRGKWAPNYEGPFXVKRAFSGGALVLTNMDGEELPSPVNSD
VVKRYYA
>Cigr-1#LTR/Gypsy 45-3674 [Ciona intestinalis]
MDQKILRPKELSVEPSSVDAAKVFKFWLRTVEDFISSLSESQSSSSAINKKRIVISCLSPDVYPYVEEAESYEEIIRTLR
SVYIKKKNNIYSRYLLLSRQQSPEESIPEYIQELKSLSRQCEFTAVEANQYREELTRDAFIDGLSSSVIRQRLLEVDSLD
LMKAFELADSLDRAQKYSTSMGRNAAPTPSYAASAPQHQHEPKRSAPQHQYEETVCRQQVRGKCIFCGGFAHSRTNCPAR
NEDCFKCGRRGHFSRACRSARYGNRVRMMAMDKQDEDQPYLAVMQTPSVVAGAPDCLGPAVVDAIVKGQSIKVLLDSGAS
DNFLNKKVAHRLNLRVEKSSAVIGMATNGLSATTQGRASASISLLGRDYTNVPFQVLDGLCADIILGHNFMCRHSEVIFK
MNGPRRPLTIPPLQKAVLGLLAAKVDPPDLFRHMRPNWKPLVTRSRRYSKEDLGFISHEVKRLLEEEIIEPSNSPWRAQV
LVAREGSKKPRMVIDYSQTVNVFTELDAYPLPSIESIVNKVTQDKVYSSLDLRSAYHQIPLKDSDRPFTAFEAEGQLYQY
KRLPFGVTNGVSAFQRIINRFIQDNHLNKVYAYLDDITVTGETLEEHDRNLKKLLVAAKRHNLTINEEKSKLRMTSIDFL
GYRISYGDARPDPERLRPLLNLPPPDTPRELKRIQGMFAYYAKWISRFSHKIQPLLCIKKFPLTKDALVCFETLKTELAA
ASLGAIRSEEPLQVETDASDYAIAAVLSQSGRPVAYMSRTLNTCERNYPAIEKEATAVVEAVRKWSHFLKGKSFTLVTDQ
RSVSFMFDQRNRGKIKNSKILMWRLELSQFTYDIVHRPGRDNFVPDALSRVNALNRDLKELQTLHNNLGHPGFSRLYHFI
KTRNLPFSSEEAKIICRQCKTCAEVKPRFYKPASRNLIKAMRPWERLSMDFKGPVKGRNSYLLIIVDEYSRFPFVFPCKR
MTSAVVIQCLTNLFCLFGFPAYVHSDRGLSFISHEVKVFLTERGIATSKSTPYHPQGNSQCERVNQTIWRTVKLLLHGKL
MAEEQWEEVLPQALHAIRSLVCLATNETPHERFFNFSRRSMTGTTLPTWLLTKGPVLLRRFVRTKGDPLCDQVELLDANP
TYANIRHPDGRETTVSTSDLAPYPSIEPTDPDRNEHVTSERFETQEGTANEQTGDSERSEIIEPSNETTYEVPLRRSTRQ
RKEPQRYGF
>ATHILA-6_SBi_gag#LTR/Gypsy 162-2630 [Sorghum bicolor]
MSGFNLPANFNSNPEALLRKKRTRAVSSSATPPTVEPITPAPSVSTTMARSLRDYSTPAVANVPVGPAVNTGNGNFELRT
GLLTMVQANQFCGLPSEDANAHLQNFLELCETIIIKDVAPESVKLRLFPFSLSGKAKQWFYQSKEAVNTWDKCSAAFLAK
FFPMSKTNALRGKISNFQQTSLESIPEAWERLQEYIRACPHHGMEDWLVLQNFYEGLTPMSKGHVDAAAGGAFLSLTIEN
ATTLIEKMVANQSWGEGRKTQKGMHTVKETDLLAAKIDLLMKRLDGQATDPTTGTVQAIDSRMTCEECGNVGHMGINCPG
TQEDASFINNGFRQQQQGNGWNNQNRPQGNYSSFNSSQPSLKDLVLGQAKINENLVKKLSENDQMFVNINTKLDGLTLSV
RDQLAFNKKIELKVAQLASAAKAVVSPDSVENVNAVTTRGGKTTRDPPYPNHKTGRAPRQQEETQAEGPAQPSEESMEDE
PTPNNYGDTTMLPFPTRERRKKKDGNEQFLRFVEMVEKTHVSVPLMDVLHIPSYSKFIKDIINKKRPLPSTEVVKLTEEC
SAAILNELPEKKQDPGCPTISCSIGAQQFDHALCDLGASVSVMPKSVFDRLNFTNLEPTTMTLQLADSSVRYPAGIAQDI
PVKIRGYYVPVDFVVLNMELTKETPLILGRPFLSTAGAQIDVGAGEIRFNINGQEEKFEFRPRRQQECNMIRILYGPNPQ
GIRQVEIQPQLIKNTKISKKKPEPKEKAAPKKNNKEQKKKIAPKKNEKRDEVPKPSQPKQVWKPKQKVEQTSTPPKVILL
KWRPKQVQPSTPPKTDVPSSSKK
>ATHILA-4_SBi_env#LTR/Gypsy 2310-3911 [Sorghum bicolor]
MNRIFGLRRSRRQRGEDPPTPARNEQPAHGGEEEEPHGHAIDEADAPFIDLESEREMQAYNLMKEREFLHSPAFDPAFLH
QIGMDVEFDTIFEHLGWSRVAPVHELGSRLLTIQILGTLQIVDYGITFRCFGRDFGIYWKDLANRLGFHERCSIDLGFSL
GGYQRHAFWHLISGQHVVGKFQGHSANIHHPTLRLLHKWIASSFFSRDDTHLTYDIELKLLYAALKKIKVAPVVELVNHW
LHSIKTSTAIMCTSLITRLAASVDPHAANTIIYITTPRIMINESHLSHAHMIKRDETGKKILYYFPGYTNEIQLPNPDLA
LYNSPSLTFTLIEREGGRRSSVSRRNSRRREQEEQAAQAARAAQPAPSAQPAQHTPPPAMPGMGWTPAIPAPGFTPGYGY
GMGYVPHPYEAGGSSWQAGGSSWQAHGGAGPSEPEAYGAGGSRHHEPGHSSDSEGMPPPVRPQVTLDVLNTRMGGLELQN
RQIQGTLNAHIQTATQWHQQTQQSFIDLEDASRRRHEAQMAYLRSMGHFPGPQQ
>Atlantys_LC_gag#LTR/Gypsy 117-3749  [Lotus corniculatus]
MHLRSGKTISMASNRGRTSPQGSNVGNQGSPGGSSGNNNEEVSTGMGHGTTMPTQNVAISAVAEMPVSTSVQAQIVPTXT
RENMPYGMPTSMMQGIQGTYSTFPENVPPFXIPPFGANGTMLNLGSRVSPXIPGSSSQIYLSTGMNTGSLQAIRQQVDDS
NHEMVNMLSRQIGELINPVLQNNNANNQHLARQMDRLATALGAPVEIQXAPGINQIPLPNHVPAPVRYQXPQHQEMRANP
LYEAVQPPLQNVYMVNREEHADGVLERIRHQNAGGQQNVAAVVEQLLNQHGFNVGFANRPHFVSAFTEEVLESELPRGWK
VPKFTKFSGDSGESTVEHIARYQIEAGDLAINENLKMKYFPSSLTKNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECK
VSLKDLASVKRKPAESIDDYLNRFRMLKSRCFTHVPEHELVVLAAGGLEYSIRKKIDTQYIRDMSLLADRVRHIELLKAE
KSEERAKTTKWPKKEKVAYIDADSVCQNPCVYREVPADVDLNDVNLAELQPGDPYVCKALKPRENKLGEENPKNTIPAVK
TYTFDVTKCDAIYDILVSDGLLVVPKDQKLPSPEQRKGKKYCKYHNFFGHWTSQCVRFRDLVQGALDSGRLKYDEKAKSQ
MKIDSDPLQVAEANYVEPFYIGMVDISEKLNLGLTLEEAKEENTAVEEPDVVKEVSLEEVYPKAGETLVEFXSRSKDXEK
EVMLCPRCSAVFDKSAAKAYQDSEMKRHYQXKMPVSRRLKYPHEEWVERDQELDGHKGQXSRIKDKTYVPDAGLPKNQWF
RPAPPRPKPYPKWQKIDLGQGSSYINNSRVSRXYSYGSGNYYAPEQMTRTQFRRFLRKRKAERERGGKFRSLWDIKPEDN
PRNEPSVASIINQLDHAIKQGTXVPPNPAKEKGKDVXEDEDEDMLDDFDDSDGEDLNIICIVSILPAEFDRISEVTEXEE
DYYDEEEPDDNPLCYYVMQKGSVEDERAIFQRPTEQMKSHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKT
EADLIPHDMVLSDYEGKTGSSLGAIMXNITVGTVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKADGV
VENVQADQSYYLAETGYVXKKNFEKSLATIAPLDTVAXQYFNPYSEYSVTLDPIRGLNLNEAYKPDAMSGWHSDEEKDAT
TEWQNXVKDD
>CER2_CE_pol#LTR/Gypsy 2932-6075 [Caenorhabditis elegans]
MFMLPSPIGFQLMVMFYIVFDSENTPCVQTVITDSDPAFNINLSKVKISDSERAKLKVLIEKYHDVFSKNAYDLGSSKTD
PVHIYTTTEVPVRGRAYRVPVKCQAELEKHINSLIQSERIVESNTPWTSPIVLVKKKNGSLRVCLDFRKLNEVTIPDNYP
LPRIDAIIEKVGGSRYFSVLDMANGYLQLRLDAESSYKCGFITENKVYAYTHLPFGLKSAASYFQRALRQVLDGLEDVMV
YIDDVLIYSKTFEDHIRTLEMVLERFRKFNLKASPNKCEFFKESIVFLGHEISRDNYSPNRVNVETIRSMPTPTNVNEVR
RFVGMSGFFRKFIPNFSERAEPLTRLTKKNQKFVWAEEQQNAVDELSEALTNKPILTFPDYDKPFHIFTDASAVAQGAAL
MQTVGEDEKDFAAIAFISRTLADTETRWPAVHTELGAIIFALRQFRPYVCMSKIILHSDHKPLRYILAKSKINDQIGRWL
VELQQYDISIVHIDGKKNMVAGCLSRAKDEIAPLSGIEMEDIIDFPVCMPIRKKKRASVVFVLQANKNLRLDLVEEQDKD
PILRAIKKFLVEPKASIDCVPKSWCDVLEHVEISEKGALSVAYHNSFPKTVIPEHLRRFMFEAFHSSKLQGGHHNWKKTF
RKASVRYFWPDMKSDILRWCMECIPCQQRSKPHPSTREPQQIVVTSKLFEKVGVDLCGPLRSTAGGHKYYMNLICWFSKF
VVSVPLTDASTDTVVRAILTEVVLKFGTPSELVSDRASTFTSEAFRQFCKLVSIQQHLAIPYHSKGNGATERTFRTFHNM
TSKYVNAAHSDWDILLPYLTFSYNTVVHSTTGETPFFLVFGRDPVFAVDRILDPSPPKEAGKSDVKIWKEHLVEILREAW
KNTAEIALKAQLAYQKQANQGAKGSEIRPGDRVMFKNFKSKINLSRKLVKPWIGDYRVLEVNHPKALILDLDHPGKEPRE
VHLDQIKKFYLSENDNDEEDAAVDEEQVPTDVISQPIAEVTQAVEESSKKAEKHEVEAEKKDKPVEVAKNRRNPPRAKKI
PVRFAEK
>BAGY2_HV_pol#LTR/Gypsy 1591-3810 [Hordeum vulgare]
MKEVVRKEILKLLEAGIIYPVAHSDWVSPVHCVPKKRGITVVPNDKNELIPQRIITGYRMVIDFRKLNKATRKDHYPLSF
IDQMLERLSKHTHFCFLDGYSGFSQIPVAQSDQEKTTFTCPFGTFAYRLMPFGLCNAPATFQRCMMAISSDFCEKIVEVF
MDDFSVYGSSFDDCLSNLDRFLQRCKDTNLVLNWEKCHFMVNEGIVLGHKISEKGIEVDKAKVDAIEKMPCPIDIRGIRS
FLGHAGFYRRFIKDFSKISRPLTNLLQKDVPFVFYEDCEEAFEILKKALITAPIVQPPDWNLPFEIMCDASDYVVGVVLG
QRVDKKLNVIHYASKTLDSAQRNYATTDKEFLAVVFACEKFRSYIVDSKVIIHSDHAAIKYLMEKKNAKPRLIRWVLLLH
EFDLHVVDRKGADNPVADNLSRLENILDDPRPIDDNFPDEQLNVIRTSHSAPWYADYANYIVAKYIPPSFTYQQKEEFFF
DLRHYFWDDPHLYKEGVDGVIRRCVPEHEHEQILQKYHSKAYGGHHAGDRIAHKVLQSGFYWPTLFKDARKFVLSCDECQ
RIGNISKRQEMPMNYSLVIEPFDVWGFDYMGPFPNSNGYTHILVAVDYVSKWVESIPTRNVDHHTSIKMLKEVIFPRFGV
PRYLMTDGGSHFIHGVFRNMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKTVNRSRKNWSSKLDDALWAYRTGIP
WACRRIKWFTVRPVIYLLS
>Grande1_ZM_gag#LTR/Gypsy  From gi|33113959|gb|AY325816.1| Zea mays BAC clone, via tfasty with RIRE2_gag, 1 stopcodon. [Zea mays]
MAVTFHSKIAVRPGSVFCFGTISSVADEEGILHHLADLPEQKSPPTNSENAGKTLLPALRKKIVSGEAGARSSLTRKSPL
STSPTREWTRVVRKKETRERQIVLPVPPTSKENGKKVAAAAIPFYPDVLFIGRAESLAVSDDEPTAPGEEPPQRESRRRR
NRRRNVRRHHAAGEWDPEQPVSRDEVSEVGETPEERVFRERRNSRRRDRRRTQEQAEQDARQRRENPLFGRNLNPDFARA
MNTPSEVGGVLAWIADGLPRTPDAEGYRRLFTQAANHLLPLAHPPNDLRHTINSRRDARSSINASRERRHENEIRRREEY
DRDHGFPTQSQATRTESATASTGGTTRGRSRNRHHHSPPRDRRHPRRQEDTCGVSALTPRLRAIQWPPNFKVSNFDKYEP
KQDPGGWLAVYTTAARAAGASEDVMTAYLPIVLGQDALQWLRHLPRHCIDDWGDFSRRFIANFQSLSDKPAQPWDLKSIK
RRGDETLRSYLKRFQTMRNRIPEVTEAAVIEDFYRGSNDSAFVRAILQKGPTTSEELFREADLYITADERAxDLIGGAKP
APTAPRRDANQPPDKRWEKRPREEVHAAGPPASRARGGPRGGERTLDDILDAQCPYHKDMRHTLRNCQDFKHSVGHGRPF
QPLPPPPPRGGPDEPRQPHRQEEGGGGAFPRVDREVNVIFGGHGSQENKRQQKLNDRQILVATTGPPAPYRWSEHPITFT
REDQWLNFDHPGKYPLLVDPVIRESRVKKVLVDGGSSINVTFPRTLQGLGVHLKELHESDTPFFGIVPTEGEYPLGHIYM
PVTFGTPENYRTEFLRFEVANFDCGYNAIIGRSGLAKFMAIPHYTYMILKMPGPRGIITVRADFQGAAECFRVAIQAALT
TKPSAVPATSANSKPEEDLTVPANETQAVTSMRPTEETKRINLGFADERKTAVISSSLNNK
>Gypsy1-SM_pol#LTR/Gypsy 4083-8226 via tfasty with GYPSM1_pol, 5 frameshifts and 5 stopcodons.  [Schmidtea mediterranea]
EPNERLLKLNEARPSIQVSIDNRIIKALVDTGAATSMIREDQLSENQRKSIKSTNDTMISMSSHTMQLRGDIKLTVHFSN
QTVNHVFKVMTECRSECILGIDILRKLDNCVIDLTDGTIKRKAKYQGHNCAEVIALEAFxLEYHCDHIIPVKVNVKSEDT
FIFxPDKSITKNYNIMLTDECVIPKNGIIPIRIANYKEKNVKILKGTRLGKLFKGELEQTLEMCETMIMRDDSEQMVEPS
KINNVKFYDKVKINNNYLNETQQFQLQTLLDEYIDIFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGVPYKLREEIKRQ
IKELKKVGVIKQSFSQWASPIVPVRKKDGEIRMCIDxRKLNDVTIKDSYPFPKAQELLDKLRDTKYFTVIDASKGYMQIQ
MEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAVYMNDILIASKTFEEHLKDIANVLQRLKQAR
IKIKPTKCKWAEQSALFLGHIVTIEGITPNPDKIEVVKNFPVPTTLQQIQGFLGLTGYYRKFVQDYAKIAAPMIELTKGV
KTKGESKGVLIVQTINDKISKPQKKWTSEHQRAFDQLKEKLITAPILRYPDFKKQFIVMTTPAGKPxQAGQEEEKGKDYV
IAYASKTLKGAQLRYSTIEKECYSIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMQIIYKPGRINKN
ADALSHIPExRALEVFALITEKPIDIYDEQERDPEISKIREEIRKGINEKYKIAKKLVVIEDFSGKQFIVVPQKLRQILL
LQYHDGALGGHLSSRKTTSRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHSIPATTSPMELCAMDFLCKLP
TTINGNKHILVFSDYFTKWAEGFPNKDETAETVAKLLVEKIIFKIGTPRKLLTDKGKNFMSETIKRVANMFNMHKINTTA
YHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNITPNETTGYSPYFLMFLREPATPIDTVFEPRVSQYLD
APDYVTLMQERMQEVYKVANLKVKFRQEQYKDDYDKTSKPHTFKVGDKVRLMSPQVGKGKTTKLARPFKGPYEVVKVINE
NLHIQKHKNEDPIVVHVNRCKLAESEIIEGPLHRYNLRSQKGLMMSAIFLTIIGIINTTNVKEKYKTEFMGDRDILINIS
PHEIKLFNLKKKPIGDLSLESTDIKPKLMEKRERKTTHEFKRGDNVRFINLEPNTKYVLCAQLDTDYDISQIQCKKVKTI
QTKKHKMTKKVIINTTPIIIQKINSSPNMNTTTTKVTTQTIVDEVTTKTYKIPIQLKEKLIKLPTEKPIVIKSWNELQAF
QKQTVKPLWPFYVISASILARAI
>GYPSIA_p1#LTR/Gypsy 498-2012  [Oryza sativa]
MEEAEKFSPTPCLLQFGTQPPLVVIEHGGKVYVHATQDSADSCAALSKKAKKRAGSKARKERLALVTEARELLKNSKTSS
TTAAAKELRSTPAVHQEETKIMEKLDKEAYRLSWSVRSARSQNNINAARNYRRKRSQVNKLHAQLKDQLNQNDEQNQVDD
IGSEHPDPINEPYTFFPGQCANQPHRLKQLIRQAIMNEFWTRLLKRVANFPGGMLNNGVNNFRPLTLVSACHITAGTSKD
ENKFAALANEVPAPHSDPLQQQLQQLQSQMMEIQQQLQRRNNGGSGRSSPRRYPQQPESYARSGGMLSRSSPRRHFEIPE
SSRLAGARHYVPSYRPQHERRTWAPRRRSPPPASFQPRQSHMPQLWNSWSRPQWRPVESQQQQRHDEPKRESTPPHPGVA
NMQQGQRSPPRQLDQRREAEHAKREPMMGPRVAPPLLPTPPSQSRAAYVPTVNQRKRDKRRQNRRAMYQELQELVLGNVH
VRVRPEGNIHPFYDKITLRLSPTLL
>Gypsy1_DM_env#LTR/Gypsy 5128-6738 Gypsy3_env (4853-6175) broken (bit missing) and 91% similar. [Drosophila melanogaster]
PLGISFFIVFIAAWHKFFIFSHLAYFLYIFAIIGGGQLHSEQVIIYHTRYRSLPTLLLCFLATTSAHITDYSRANYIPVI
DGKVLVWEEFAYVRHSANLSEYRRVIDETDSMLDMFPQSHMKKLLSVDIAHLRDMLDSLSIHHRVARSLDFLGTALKVVA
GTPDAEDFEKVKFTEARLVDAHNSQIEINTKTQIRINELTDTINKLLKISKSAQIDTGHLYETLSTRNRIIVMELQNLML
TITLAKINVVSPNFLDHADLESVWGEEPTNTPIREILSVASVKVLQSLTILHFIIKFPKIIMACNKVTILPVVHHDTVLR
LKDNVVAECNREIRTVKNCSITPGATFCQLSSVSSCAQELHAGVVAHCDAQQSDLHPITYVDEGIIVINDRPALVRVDNG
TAIHIRGTHLITFIESAMVNETVFFNHDMVQNRAPGVANSPVLNISMKHEVLSLPYLHRLSEKNLEQIRNFEKDVDGYRL
SQIALVAGAIFCALICIGLTWQRTTRAKKSTAQLKEVLAQIGSAEGGLNLEEGIVN
>Gypsy2_Dpse#LTR/Gypsy 1041-4674 via tfasty with Gypsy35_AG, 2 frameshifts and 4 stopcodons. [Drosophila pseudoobscura]
MLHNEITQLTVVELKEKLKELKLKTKGNKAELQDRLISYFKSEVNEESMYEDTTDFSLNIQSEQLEAPSKMAFTLKDIRD
SLVEFDGSQHKDINDWLTDFESTAETVQWNALQKFVYGRQLLKGAAKLFVNSQDGLTNWDTLKEALEEEFTEKLSAKQVH
KQLENRKKKPNESLVEYFYQMKSLAKKSNLDEDSVIEYIIEGIPARRKxKNxWESEEKELVPSDFSLLILSxMASRCEMC
FHVVKDRDTLYSAVIGSDVLEVVSVTLGKKGVVFHKVEEVRDNEKRSEIEDSAQTSIAHYSDIKSSIDVSPANRVAELKE
AFEQIMTIKEIEDFSSEVDLSHLSVMTKGIVKDMITQYNPVKSTNCPVEMKIILMDEVPVYQRPRRLPYDDQERVDQQIK
EWLEKGIIRHSVSEYSSPIVLVPKKDGKKRLCCDYRKLNQKIIRDNFPTAVIDDVLHKLQRGKIFTTLDLCDGxFHVPVE
ENSRKFTSFVTQNGQYEFNFVPFGINNSAAVFTRYIFAVLRPLISEGVLILYMDDIIIPAESELEGINKLKRVLSLAEAS
GLKMKWSKCQFLQRRVIFLGYIIEDGTIIPSREKTGAVENFPVPRDRKGVQRYLGLTSYFRRFVKDFATIAKPLTNLLKK
EVSFKMGMEELASFEQLKLRLTNPPVLLLFNPKRVTEIHCDASKFGYLAILLQRSSEDQQFHPVEYMSRKTTPTEEKYHS
YELEVLAIIQALKKWRVYVLGMKIKIVTDCNAFAMTMKKREVPLRVARWAIFLQDFEFDIEHRSGVRMKHVDALSRVHCL
LLEDTIRIKIQTAQKLDEWTSVIVKVLEQGTYDDFYVQHGILHKDPTKELIVIPSSMEREIILMAHRQGHFGVKKTTDLV
QRDYYIPSLPSKVEVIVRSCLECIVSESKHGRKEGFLNLIDKGDEPLNTFHVDHIGPMELTKKRYNHILVVVDAFSKYVW
LYPTKSTGAEEVVDKFQRQSELFGNPRRIVTDRGTAFTSNIFKEYCDSQNIQHLLIATGVPRGNGQVERLNRTIISLLTK
LCAEDPKAWYKNVGRVQQFINSSPPRSTKVSPFKILTGIDMRIGYDIELKDMLEEELLAELQSEKEEIRKTVKGNIAKMQ
EENSRTYNRNRREEREYEVDELVAIKRTQFGAGLKLRKKYLGPYKIVRILRHGRYLVEKVGEEEGPNRTNTVAEHMKKWY
PSFGTNEDVGWP
>Gypsy1_Dmoj_gag#LTR/Gypsy 2441-3760 [Drosophila mojavensis]
MEGGTPHTSGLSVGWVYQRCKEELIAVARDLGLEDEGRVEDLRKRLSSFIQGGNYSVEIKGRLAEWETRFSSGGAASSMG
GRAYQKSEPDLRKIQESGSISTAPLRLSVPTASSMAGSRRDEKSKGSGNGGEMRIERRAPALSPPPERHPPWNIAEQVRK
WGMKYDGRSDPLGFIEILEERAITYGIELDRMPRALSEVLVDKAAKWFLTSGLRDVPWLEFKKEFLDFFLPPQYLERLED
QIRARRQQEGEPFKDYLIELRLLMRQARYSPAQELNRAYENASPEYRLYVRRHDFSSLTQLTQMAAEFENVRSQQREQGR
KATVETIWPKPVEVRQSNPFRAKTSDPRSGGQAEGRTETPAATQSAEATSRMMAQDAGPRPSRVCYRCAQPGHFARECHN
AQVLFCRHCGQRGRTARECCERDSSGNGQGRPPRERSGAN
>GYPSIA_gag#LTR/Gypsy 3405-5773 via tfasty with GypsI_gag, 1 frameshift and 1 stopcodon.  [Oryza sativa]
MKQVIAEQAPMNSESELDKPYDSWHDLVPFPVGWHPPKFRQFDGTGDAREHLAYFEATCGDTARNPSLLLRQFSGSLTGA
AFHWYSRLPVGSISDWKSMKDLFKAHFVTMKKDFSVVELAQVQQKRDEKIDDYIIRFRNSYVRLAREMHPEDAIEMCVHG
MLHHWSIEVSRREPKCFSALSLAVAATKLEYEKSPQIMELYKNASGFDPSKRFNTNVKANNGGAKPKASNEANTTRMVNQ
NNVPMLGSRSEPTGGKSRPSIQELLKKLYVFRREMVKGFFNQVMAHNHLTLPEPRRPDQVGMTDNRLYCPYHRYVGHVIE
DCVAFKEWLQRAVDEKRLAIQPDAINPDYHAVNMVTVGPTSKMRNTNIEKGDWVPLAQVERQLVNLANTQKQIPRRAAQE
QYRRPFNNTYRHDGHATFTRRWHDPSKRRMPPRFVPRSEGDESFPRPRRIPPTLAQFMPRNWGQLPKEVNSSSEKESPST
PSHKAACNVILDYKDNTSTDSDEGVTPHEREAMRAEAELEKVLVKEVNMNLRGGKVLPERVYLQRPGKEQAQPVKDDGVP
DSTPKGGVHEKGRVTDIDYNVVAHLKRIPALLSVYDALMLVPELRESLVKALQTPELYEVSMAKHRLQCNYFNTNEITFS
EEDKVVADDNHNHPLYIEGNIGVAHLRRILIDPGSAVNILPVRSLTRAGYTLDDLEPTEVVICGFDNQGRPALGSITVKI
QMSSFSFKVRFFVIEANTSYSVLLGRPWIHKYQVVPSTLHQNTTPYAIQESHHSTQxGRVAPPADVIVLP
>GYMAG1_gag#LTR/Gypsy 133-1683  [Magnaporthe grisea]
MSPRKNYGPPIRQSQRVTNANSAKPDNLASGTATPNTEGSDQNGEITVAPVSPEPVEPAPTSANTEPEEPVEPQYDTEQD
QPVDSIEVDGSYEYESVSEHPGEARSPPHQPSAKTSDGRNEIPKFPSRAPSPAAQMRSEMANESENTTGQATITQSQLQD
LLATIAQLKDQLATQNNSTSNGARGVTPFNSAFGGTDFKPVGFAAHDAFRPYGNGQISVNPGYDRKARKTGVDPGSFEGK
DDTFDTWIIQVADMMEEDESTYKTERSRMAALFSLTKGPPNDLLRSRYASKENPFSGVAEMVATLAAVYHDDNQGTKARR
ELAEMMFDPADKTMDIPCFLLAKLTLLADRANILKSERKTLLYEHIPAKLNTQLFDDAKNPDISYESFVNKVANAALANQ
RAYEENLKRKQAKKGRQSPEPRRRRSRDYEHRREVKTATPTPVKEVVTLSDKERSALLDAGLCFLCKKAGHQSRQCPDRK
IIANMLQALDHVDSYSQPDNSTRNSSSTSSSDSENC
>GYCUME1_pol#LTR/Gypsy 1669-4800  [Cucumis melo]
CIPGYGLAAANHASIDCSRKEVTFNPPSLASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEP
VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKK
DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYQFIVMSFGL
TNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKA
GVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPV
LTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKS
LKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVLVGAVTMQLA
QLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTE
DVSGPEAGFIGGRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDR
LTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQ
VLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIR
SRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHD
VFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARGVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPE
LFGE
>GYMAG1_pol#LTR/Gypsy 1713-5630  [Magnaporthe grisea]
MPQIAKIDRSPKLNTFLAPIQLQDKGRGLNAQALCDTGADVYLSIRPSLARKVAQRLELPIKKLPKPLDFGDFNGKVTAR
ATEYLRLTLQIDGRQFPRQKFILLETAHDVFIGQEWWTKHRVGLFPATRSFVWPNDLPAMAQYSPAIVVQRSNPPLDLEA
QADAVRRDRKMEQEDRRIQVRKILRSPKRQHENQAQIAEINAFPTIPKTVSNKGLPASICALLNDPRQDRWKRSPLPTEP
IPLVPVNDTPTTSLNAVSALQWNKTHDGRPIPFPADEDPEHIAQVRAKLPKALAHLEGFFSKKASTILPPSRPGFDVVLE
LEKPLEGRPARYSTPFAMMELEKETIDELLRIDFIERTMEETAASTLFVPKPQSKEQRFCVDYRWVNKFIKGRQVLAPDV
AGTLSKCGKARRMTKIDIIRAFNRLLMDPKSRYLTAFKTRQGTFRWKVLPFGLKVGPAWFQAFINAQLNELLDAFASAYA
DDVLIYTEDKSEQVHFEQTEEVIYRLHKAGLQGDIKKSSFGVFEIEYLGLLLEIGKGIRIDPKKVEAITSWQWDDVTSVS
AVRSFLGLCNFVRTFCHHASEQAEPLTRLLKKGVPFERGPEQKSAFEALKQLVITAPVMSFFKPGMPVRMDTDASGRATA
GVVWQQQDDGSWKPIGYSSKTMSPAEQNYPIQDQELLAVINTLKDFEPALLGTKFCVFTDHQALIYWSTKKLLSARQIRW
ADYLANFDITFKYRPGKDNVAADALSRKTIDNPTVKARAVLDRTIALIPPEKIDSRPGEPLPTISNLEPSAPQGADLVAL
ILEENLKQNLGHHDNLLTVPETTQDGKIFLRTALIREAHEPKIFGHGGQNKTLSRLKKDYWWPDRNRDVKRYIKNCRECQ
RNKVRHDKTPGLLHPLEIPRRCWQHVMVDGKDMPKDKEGYNYVWVFICRLTKLLATLPGKKTDTAETLAMRYYQTVYRWK
GVPDLWLSDNAGPFISEFLNTLNELTGTKHKHGSARHPQSQGSVEITNAELDQKMRFYVDKYQTNWRRHIPAFDFGHNSS
VHASIGMAPTEAETGARPRDPLSLPLPEEDLETGQQQKALEMVRQARQAQELARNNGLGAQIEQQRQANKKRRPVDFTVG
DAVYVSKKGFSTEAPTTKLDSQNAGPWTILEEKGHSFILDTPAWYKGSKLFHASRLRKAATDPLPQQYQKPEPPVEINGE
PEWEVEQVLASRLFGRKKTLQYQVSWVGLDPDETWYEARDLKNSPVLLDTFHREYPDAAGPPVNLQQWIRSAAEDVFAED
GPEDNVAEHDAKKTRERRKAPRRHT
>GYPSHAN_MT_env#LTR/Gypsy  3032-4279  [Medicago truncatula]
MASRKGGASSSGGPQSKKKTQAKNHGIIFKDTKQRERYKILLSKPLHPCRYPDPYTLSVLGLRDNVFSLLGNLGWVDMLR
PMKGFENFTYEFLSSIEFTKDKVNFDNPDHRVSFRLLNMDYEMSLENFCLEMDFANAGFIHDSWNPNLKSENYDPALFWK
RITGLRQYNPRNNKASNIHNPVLRYLQRVMACTIWGRKEVGTTRTDELFMLWAMLSNNPVNTCFYLLDYLSSIGARPDNR
AEIVVGGIITFITRKFGVGEEDGINPIEGNNRLNIETLVAMNFIKIHPPMTYALQLRIPLLFLLPNPSRTNPEVEENLLY
VGDGLQVHEEHHQGDEEGAHMHHEEEPHDHNDNNERWAWMQTEVQRISTEQQRQGVELSGLRNDVLQGNRISKENNQMLR
NMMQHFNLQGPPYGPQ
>Gyps2_gag#LTR/Gypsy 162-1514  [Strongylocentrotus purpuratus]
MAGFEDLAADVLARLNAGTEDELLKVAEVLERPGGDVSKAKSKGRAGLLRMLMRYLGSEEVEELEDEGKAVWGKVTEVLV
GKVGNVQGKGVEQDSADVKETLQPTQSVTAAEPDDVAPSIPISNVAFRKEFRIVGQIGEPQQKDKLSFSSLARQIDSGIR
KKYAEEEVVEQVIRAISPGLRIRSYLEGRAGLDLPTLRKILRAHYREKDATALFHELSTAAQGPRESEHDFILRSMDLKQ
KVLFACQEAGSGVRYNEHQVQKMFLHAVSTGLQNDTIRHELKPYLTETGSDEEVLVALTIIVGHEIERQNKLKTKTRPIG
INEISASGEQPAPPLENPKKKAANNEVSKMPDWNEMQTAIRSIVINEMKNLASQHPPSSTQGRSSSTNQGRPRRGCEACT
KRGQEGSCRHCFRCGGSGHYARGCQPQGNGNGVPQWDQERPSQPRPENQQ
>Gypsy-9_HM#LTR/Gypsy 22-4035 (Gypsy-17_HM_pol (20-4068, 1 frameshift) 82% identical, 92% similar)  [Hydra magnipapillata]
MMHLSNISCLDLENDDFVEYIERFDNFLLANDIEDAEKQKAVFLSTIGGPAYKLIRSLCENDTKNKSFTQIVKLMKDHLK
PIPNSIAQRFQFYKRDRKDEESVSGYITELRRLSEHCEFGENLNDYLRDRFVCGLNNENVQQKLLTIKNLTLETTLDTAR
AYETAYKDTKAIRTKESFIEQDELHKVEIRTKSEESKECFRCGFRGHQANNCNYRYLKCHTCGKIGHIKRKCRSEKKELD
HRKEKKLGVKKIGIQDESEKGCTAETEGNKDDFLALYSISEESDKVTGPVMVNVKINGSEVSMEVDTGAAVSVMGISAYK
RIKKNEGKLQNSGVVLKTYTGELIRPEGIGLVEVVYNGQCCKLPITVVKGNVPTLMGRDWMQRLNLQWLELFKRMRGINF
CDKVDSRVKTLVEKYPEVFSDRLGCLKNFQCHIPLREGAEPKFYKARPVPYALRTRIEQELDRLEDQGVWRKVQYSKWAA
PIVPVLKNSKDPTGPLRICGDYKITVNQAAPVDSYPIPNITDQLATIAGGERYTKLDLSQAYQQLELDETSREFLTINTH
QGLYQPTRLQFGVHSATGIFQREMDRRLGRLSFVKVRVDDILISGKTDAEHLNNLESVLKILKESGLTLKVSKCSFMQPE
VEFCGFIISQKGCKPTARNVEAVMNAPRPTNIKELRGFLGMANYYNAYIPRMASITEPLHNLLRKNVSWEWNRNSEQAFE
SVKTILCNAPLLAHFDPSRKIVVHCDASPYGVGAVLSQQQYDGSEKPVSFASRTLNTAERNYAQIEKEGLALVFAVKKFH
QFLFGQKFTLYTDHKPLLGLFSESKELPTRAAARVLRWALLLSAYDYQLLYCPGEKNATADGLSRLPLDVSKEKSRLKTI
EVAMLELVKTPITEKQLRGATQNDPILGVVLNRVLEGGLTMEPSKVEMKPFALRFSELSTEGGCLLWGRRVIVPSVLRET
VLEELHEVHPGISRMKALARSYVWWPGIDTEIEDKVKNCETCQRSQKNPLTWSHPWEYPSRPWERLHIDHAGPMNGKIYL
VVVDSFSKWIEVEVVRSTEAKATIKVLRKLFSTHGIPRVIVSDNGSGFSSEEYKEFLYSNRIKPVYSAPYHPASNGQAER
MVQTFKNSIKNFQGNDIETQLCRFLFKYRVTPHSTTGVSPAELLLGRRLRNPLSMLHPEVSSRINEKKLSDSSVDKVRFF
QPEDTVYVKNYSRGEKWIAAIIISAVGNVSYKVLTLDGRIQMRHVDQIVNRYVGKVNSTKTPESINTPILSNADKPNEVI
ETPCSSEILSENRDEISMDVEPEKLCEQPGAFSEPTSSINRRSGRVRRKPSYLEQYE
>Gypsy-9_DWil#LTR/Gypsy 90-4226  [Drosophila willistoni]
MPIESAEFQELLSQQQQFTTNILEQQRQWMREILGNNSSSSASNSSHAGELAMCPPFHKFDKDNQNWESYLEQLSQHFNA
YSVSADEKQKAYFLSWCGVSLYELLKNLFGSSNLNTHTYKELTDKLTVHFTTKRHIVAARYEFFKKEMAHGQTHKEWVAD
LRGIARECQFVCSAQGCLSNYVDEMIRDQIIVHTPYDAVRTAALQKHQPTLEDVLMVAETYETTTKTVATLKDKRESQVP
LNAIHTFKKYQNKPNKEKQCKNSWKSCSGCGTSHTRERCKYRDAVCYKCGRKGHISVVCMSKQDKSNSQTQKREEANLME
EVNTITGQVKNENRKKLIDVKILNQVITFQMDSGSTASVINFETYLLLNKPKLQECSRQFFAYTHIPIPILGELHTVAKC
GEKVENIVIIVTSKRDEANLFGTDLFKKFGFDIVQICKIYEQENIRINELCCKYKSVFEPAMGTIKDFKASVFLKSTATP
KFCKSRQIPFAQLEHFKAEANRLTEANIWKPIKFSNWASPIVLAPKPGGAIRICGDFKQAVNAQIDIEQYPLPTKESLFH
IIRHGKQFSKIDLKDAYLQMELDEATKQFMVVNTPLGLFQYQRLPYGIASAPAIFQRYLEQLLKGIEGCGNYLDDIIISA
PTSEEHLERIEQVLNILQENGIKCKKEKCFFFKDEIEYLGRRISAAGILPDTSGLEAVRLLKPPSNLKQLEAFMGKVNYY
CNFIPNFSQLAAPLNQLRRKNVKFYFGPNQLQAFSALKSHIINATQLAHFDENLPIVLAADASSFGLGVALSHIQHDGQE
RPIVFASKTLDKHQEKYSQIEKEGLSIIFGVKRFHQYLYGRKFILLTDHKPLVSIFNPGKHLPLMTSNRLQRWGIILMAY
NFDIQYRATSAHGNADALSRLPIGTDIEFDKEEEACNVIREINPPVNAETILKHFNNDKILKQVLHYVSVGWPEKLESGN
EDLLPYFNRKFALTVNDHLLCLQSDANRMVIPTSLRPKVLKLLHEGHWGIVRMKQIARKHVWWPAIDEDIKKLAQSCNIC
KSNNPALPRQYQSWPTATTAWERIHIDFAGPIFDAMWLICVDAYSQFPFTVQMTSVTTANTISALSSIFAIEGYPKTMVS
DNGPQLTSEAFKEFCILHGIKHITTAPFHPASNGLAERFVQSFKISVKKNIQEGLPVRTAVTKYLASYRFTPNAQGKSPA
ELIHGRSVRTVLSQLFEKPVETKQELTKYSTNQKVFSRNFSRGEKWIEGTIDRPIGRMLYVVRTSNGFIKRHFNQIKPRM
SDNTSEHNPTKYWFVPEIPQPAPCSTPELQEDQPETHHDLPNTIQETVPDSGENAATSNETPNRIQSSRRRSGIPVRQST
RARQEVNRFKPHDFRKSKN
>Gypsy-10_DPer_pol#LTR/Gypsy 1336-4614  [Drosophila persimilis]
MQWPTYNILLEVRQGRGPDMAVLPESGKRPATQAAEGRARVARRSPPKLVGELTEEDVQLSAVVRIAGSNWKATVDTGAT
SSFISCEAASRLGEERRQKETRKLVRLADGRSREINSQIEVELAFGDKIVTIPLLVMPGVIDELVLGWDFLAAVGAEVTC
AGHRVVIPARGHRQGRLEEKLSVAVVANTEGSVGPASDGTRAEEGSVEDFLAKELEEFRELKGVSNIATHTITMSDAQPV
KQRYYPKNPKMQAEINQQVDELLARGCIEPSKSPYSSPIVMVKKKTGKWRLCVDFRQINAKSIKDAYPMPRIDYILDQLR
EARFISSLDLKDGYWQIPLEVGSRKFTAFTVPGKGLFQWKVMPFGLHSASATFQRALDQVIGPEMMPHAFAYQDDIIVIG
RTEEEHKRNLEEVFRRLKNANLRLNVDKCQFFRKELRYLGHLVTGDGICTDPEKVAAIKELQPPASVKELRQYLGVASWY
RRFVKGFATLVQPLSTLLKKKAKWEWSTEQQQAFEDVKSRLTADPVLACPDFSKKFVLQTDASDYGLGAILTQETEKGER
VISYASRTLNSAEKNYSATEKECLAIVWAIRKLKPYLEGYHFKVVTDHMALKWLNSIESPTGRIARWALELQQYDFEVAY
RKGQLNVVADALSRQPLAERCLRTTEEEAEKGHEPEAECGWIKKVKERMRTEPRKYPDYVEEAGRVYRHIPHRAGEEEIA
SWKLCVPKGLRERVIRENHDSPEAGHAGGRRTMARVAARYYWPGMHRDVRTYVRRCEICIRYKPSQLQAAGKMLTRVPEE
PWATVCADFVGPLPRSKHGNAMLLVMVDRFSKWTELVPMRKATAEALTKAFRERIVSRFGVPKVVITDNGVQFTSRAFKR
FLEQMGVRHQFTAPYTPQENPTERTNRTVKTMIAQFTEGNQRNWDEKWPEIMLAVNSGVSESTGYSPAFVVQGREPRLPK
ALYDDEALGTGQGTLNPDENAAKLREVFQLVRRNLERAAQDQARYYNLRRRAWKPTIGDKVWAKQHHLSNAAEGFAAKLA
PKYDGPYTIMDFVSPVICKLKKDSEKRTRTAHIGDLKPQPGEGTPETGPGTEA
>Gypsy-11_HM#LTR/Gypsy 29-3688   [Hydra magnipapillata]
MDAKIFKKVLCDEPNEEEYIYWKKMLSIYLDKANIDEDCKLQVLFVLSGVKAFTIIQDTTSFDDAIKILDNKYQKRSTPI
MMRHKLRSFKQQEGETVESFMSSLKQFARKCPTEPLTAEQHINLLICDAFVAGIYSPSIRQRLLEATEDNLEALYKTALT
MELATEDALNLTTTTTANTTLPTFAASRNLTKSHCYWCGNDPHPKIKCPARNSTCTHCQRRGHWATVCLSKKQNKTYTKA
AVVKEYQEENDNAIVSTVIAAINSPDRLINVTINKNITQALIDTGSDKTFITSELLQHWNLPYDTQSTSKVSLADNSTLK
VKGIFQGSLLLACEKLKVQFLVVDNLVAPVIIGMDVLTQHTSITINFKGNKEPLKFCLATKSMKCTTYALIPGVDIDKIK
PVATTSRRVPKNNSFITDEINRMLKQDIIQVSRSPWRAQCFVVSSGNKNRLVIDYSNTINLHTPLDSYPTPRIDDLILKI
AAHKVFSTIDLKSAYHQVKIRPEDYKLTAFEANGRLYEFKRLPFGCTNAVPIFQRVMDEFIQNNKLENTYAYLDDIIIGG
KDDQEHDKNLSRFLHAAQIANVEINKEKSKFKKTHIEFLGHIIENGTLKPDPKRYEALINMPEPKTLKELNRMIGLFAYY
AKWIHNCTEFTLPLTQARDNFPTKGLTPQAKEAIKKLKIKLAEACLASPNFKVPLTIETDASDTALGGTLLQLGRPVAFF
SRTLSNAERKHAIVEKEAAAIVECCRRWKHLINSVPYIIIITDQRSISLIFNKQISTKIKNEKLTRWRLELADINYTISY
RPGNQNIVADALSRCCSIQNTNKTFYNIHSQLCHPGIKKMIHYCKTRNLPYSTTEIKQLTSQCTTCNELKPRFYKPPAGR
LIQATRPWERLSMDFVGPLQSTSANKYILVIVDEYSRYPFAFPCKDITANTVIQHLLSLFSLFGAPSSMHTDRGTQFESI
SLKVFLERNGVIRTRTTPYHPQGNGQCERMNGTILKAVSLALKTLSLGKDRWEVALQMALSSIRGLLCTATNETPHQRMM
NFQRSSIIGTVLPNFLTEQDSTILYRRQIRLKGDPLVDRVQLLETISPHFARVKLQNGKIDTVSTKDLAPLQDRNPLIEP
VQQQSECSNNDEIVISNNNHNSGNRKQVELNDTNEVVSNLLHPFGNPIKDSFSYDQSTTTVPNQPSIQKVITPDTQPNII
SRTGRTIKRPKYLDDYFLS
>Gypsy-10_DVir_gag#LTR/Gypsy 581-2152  [Drosophila virilis]
MAVRRSTESIVAAINAQDPFCGICHEQLQAEQLSATTPCQHRFHDVCISNTLKTTPKCPVCEADCNPGQLIFMNNTLAAE
LHSAGNAETDETLSRNTLPCQDGSTTTGIRRGQRFGKGRGATPKRSMQTRSMNRNHREYLGSCMSLGSNGNKSVDNGPNV
ETITYINEALQSQQRTLIAELKNVIKASVEQSLQEKLATLNVRSEQAESTRSRLVQSPRGLGADTLPNSAQNSDIPLDCG
PYSPRGSNRSNSSLSSEKAASIMQTWRLKFDGSKDSMQIDEFLYRIRSLTAQNLNGDYRLLCDNLHLLFFGKANDWFWSF
HKKNPQYTWLAFCTDFRLRFEDVKDDFDLWELIRKRRQKDQETFDDFQSAIEGLVSQLSNEISEDKLVDLLKRNARTALR
YELLHLKIRTRAELREEVKKHESFCRETGSFPNRTKYGRGNVSELLENNDIEDNISEIQNKKIVCWNCDKVGHRFDDCMG
ERRIFCYGCGAKNTFKPNCSKCNLLGNRKRDAQTNTSLTHPTKE
>Gypsy-6_SMo#LTR/Gypsy 174-4904 [Selaginella moellendorffii]
MHAASGMVKRNRADDAETSRRANREEETPARDAAEEAEAESEEEEPNAAALQRTAQEVEIENLRKEIRKLKKENKKRKKE
AEAAKPAKPKQPDSSSSSEDDEVLQPPPVARVSKFKPPKPPNFRGMRDYQVLEDWVYDMENYFIAADVDDRTKVACAQSF
LTDHAKTWWRQVCAEKGQTRSWTKMRSRIRKEYLPDDLGLRLRAELRRLKQRGDLMHYVNAFAQKRIMIANMSDEDARSY
FLEGLSSLSRNEILKFKPKTYLECKEAAQQVAFSHSLMEQYQQPYAGNSDKNRNSGNKQGDRKQRVESRFRPGGSQATVN
KGGGGWRPPAASSGPRPSVPPPGGYKQQQPAKPAPSGTGSVGHCFHCGESGHRSSECPNKHKTRSRVNVMREDGGGEAEG
VDELVNADYEEEEVSNFRCFPQAFLAVNANTDPLMYLVGFVRGHRIRVMIDTGATHSVISEDLVKLLGLNAEQMSPMHFR
FAEGGQVARKFVSDVPIKISKWKERVDLVVLKIPDFQMVFGMDFFNKYIKGIYGAGQSRITLKSEGHPDVSFQLQKRSSK
DWDAKFLTARAAQKAAKRGCRTFWVQVMEAEGVGDSVRIGDGVDPVPKKILELLARNQDIFPKDLPPGLPPSREVDHRIE
VIPGSKPPTKAPYRLNIKEMAELKKQLTELLDKGHIRPSKSPYGAPVLFVMKKDGTMRMCIDYRALNKITVKNSYPLPRI
DDLFDQLLKAKYFTRLDLRSGYHQIRVADQDVEKTAFKTRYGSYEFLVMPFGLCNAPATFSTMMDRIFGDYLDAFVVLYI
DDVLVFSETLEDHLKHLELVFQKLREHKLYAKESKCAFGQLRVNFLGHIVGGGVIEVDPKKVEAVKSWEVPTTVSDVRSF
LGLAGYYRKFVRNFARIALPLTELTKSSIPFHWTPACQRAFVRLKEILTTVPVLRIPDLDKPFEVHCDASGYAIGAVLQQ
DCDKAVGVTLRRHGCPVAFYSKKLDETQRRWPTHEKEMFAIVSALEHWRHYLGGHTKVYTDSNTLSYFATQPKLTPKQAR
WQEKLARYDIEIIYKPGKDNIVPDALSRQAQFRAISAISSDWLEDVRASYGSDPLAKAILRRAGLLKQSPGSEAAKVASR
TNAKLHFSVRDGLIFYKQERLYLPSKDLQQLFLREHHDVPAAGHGGQRKTLASLKKGFFWSGMEGDVADYVRSCPICQQC
KRRTEKQAGKLQCIPAPAWPFQSVTLDFVTCLPKSKGYDTLMVVVDRLSKIAHFIPTVGTVNAKQAAKLFFHEVVRVRGL
PEEMISDRDSRFTGKFWGTLFQLFGTKLKFSTAYHPQTDGQTERVNAQVEDYLRYYVAADQRDWVEHLDTAEICYNNTFH
SAIGCSPWEMLQGNARGVPQQIVVPKPMTEVLVPAVETYAEQLRQGWSRATEAMGKAQDRYRRDKDQHRRDVSYQVGDQV
WLSSRNLNIKGSLSRKLLPRYVGPYRVLKRIGDVSYRLDLPAEMSNVHNVFHANLLAPYTMDVARQGEIRPPPDVVDGEP
EYEVEAILDSRCRRRARAKEYLVKWKGYPTCESTWEPLSNLTHARELVTEYENRNKD
>Gypsy-4_DWil#LTR/Gypsy 1206-5202 via tfasty with Gypsy72_AG, 1 frameshift and 1 stopcodon. [Drosophila willistoni]
MLYNEITELTVAGLKEKLKELNLSVKGNKPELRERLISYFDLDTNEESLYSEANTSIQGEVEEVEREVTMAFTLKDIRDS
LTEFDGSNKKDVLEWLSDFEGTAVTVQWNDLQKFIYGRQLLTGAAKLFVNSQEGLGRGRLKSALQDEFTVKLSAKEVHKQ
LESRKKKYNESLVEYFYLMKSIAKRGSLDEESIVEYIIEGIPDSKMNKSVYYQARDLKELREKLTMYEKYASNQESKTKP
RFEKLQSRNTLEDFKCFKCGGKNHVAKNCKDNFKCFKCNQMGHKANQCEARNTKETKKDNTNYQQMTLKFNRSFKNVPIG
NGVLSALFDSGSDLSTISESTYKEINPVNLNRECKEVIGVGGKKIRTLGFFNIKTELDGNAVEIDFHVVRDKDTLYKGVI
GNDVLENLNVTIGRKRIVFHKEDEIPKPISREVQTKTNISELQTTFERIMTMTLDEDAPLEIDLIHLDEGIKSDILEMLK
SYKPVKPTISPVEMKIVVTDDIPISQRPRRLPYQDQVIVNQQIKEWMEPGIVRQSFSEYSSPVVLVSKKDGKKRLCCDYR
KLNQKIIKDNFPTALIDDVLHKLQRGKVFTTLDLCNGFFHVPVDESSRKFTSFVPFEFNFVPFGITNSPAVFMRYIFAVL
RPLIDEGIVILYMDDIIIPSGDEEDGLNKLKxVLNLAETSGLKIKWEKCQFLQRRVNFLGYIIENSTIKPSREKTMAVES
YPIPTDKKGLQRFLGLTSYFRRFVKDFATIARPLTNMMKKDVPFMMNEEALASVRQLKVCLSNPPVLRLFDPMGITEVHC
DASMYGYGAMLLQFNSEDQNFYPVEYMSRKTTPAEEKYHSYELEVLAIIQALSKWRVYVLGKKIKIVTDCNAYAMTIKKK
KVPLRVARWAIFLQDFDFEIEHRPGTKMKHVDALSRIHCLLLENSLRHKIQQAQLLDEWINAVRKVLENGTYDDFYLQYD
ILHKDLIKELIVIPSAMEREIITMAHRQGHFGIKKTIDVLGKDYYISNVASKFEVVIKSCVECIVSEQKHGRKEGFLNVI
DKGDEPLTTFHLDHIGPMESTKKQYNHVLVIVDAFSKFVWLYLTKSTGSEEVVDRLQRQSEVFGNPKRFITDRGTAFTSN
MFKEYCTSQKIQHLLIATGVPRGNGQVERLNRTVSTLLTKLCAEEPKSWYKNVGRVQQFINSSPPRSTKISPFKILTGIE
MRTTYDQELKSQLEEELLIELQREKDEIRRLAKDNIAKIQEENRKSYNKFRKPETEYKVGDMVAIKRTQFGAGLKLKKNY
LGPYKIVRKLRHGRYSVEKIGDGEGPNRTNTVAEYLKMWNPSFGTNEAVEWP
>Gypsy-3_HM_gag#LTR/Gypsy 17-730  [Hydra magnipapillata]
MPPVFDGNHQRFVRQLRTYITAMDVPESKRKTIILTCLPPQIYSALEDLCLPAYPEDDSVTYEDIEENIMKLFKPKSSLI
LRFEFATIKKASNENVTEFSRRITRAAEGCKFTDRDDRMRDQFITGFNDGVTIKRLLLESEELTFEKAVEIAVTLERVTQ
EARQLDGSENVMIGATSLLSRTSGASDINKVKCFNCGKLGHFARDCEEKCKTCSHDHQAKNCFKRLQGLKGKGRIWK
>Gypsy-5_CR_pol#LTR/Gypsy 1335-3595 via tfasty with Gypsy16_CR_pol, 1 frameshift and 3 stopcodons. [Chlamydomonas reinhardtii]
MTHTRRRLKCWHLQTQDRYCRWGGSDDAEELARMLIQRQPGSDLLVFATMVAAQTDATEAALAAANRRQPDVWLDAEVMA
LIQGLAGQAAASRRAVRRASSYRWDGQQLLRCLPDGRARVCPPPAERLGIAERLHLSLGHLGVRRTRALLQLGYWWFDMG
ATAAHVVRNCRACDLSRVTGDARPAELQPLPVRGLFYRWGVDLAGELTPTEPDGYRYCVIAIEHFSKHIEVVPIVDKTAD
RVARVFADIMARFGAPAEVVTDNGSEFEGEFAALLERCYVDHRHASPGHPQADGAAERIVRVVKDALRKACYESADPARW
DRALPHLLLGYRCSPQAATQYSPFRLLHGGVEPQVPAAVREGFAEPLSFEDAAAATESLRARAAWVQRHYPEAAGNLLVA
QHRDTRRYAAARAARRLTNTPEFSAGDYVYIKKLKVDNTLQFQYYDTILRVKSVGPLGVAVLIGRDGTQQLRRRVEQLAP
CHLDVDPAIEPQLFRPGKDLACEACSSPGQPARMLLCDGCNQGWHTHCLRPPLREVPTGAWLCPRCLAHLSQQPPTEEAT
REWPEQLGQLLFPKASTRRLDDEARQMDGTVVTRRVRTGRGKGAGETEQKALLQFRGALYRPHYFAVKWPGEVEMEYWTR
GACAARAGARIRRVEGPAGGTRAxLALDSCAGIRDGGPSWGDEAVxRMVLWIRMTVGGAIIRYLAWVEMSKDDVCCVFVA
SLKRTERGLTIWTYxPCVLACPCVSQPRLPCLAS
>Gypsy-5_TMe_pol#LTR/Gypsy 3483-7171 via tfasty with Gypsy-34_BG, 1 frameshift and 2 stopcodons. [Tuber melanosporum]
MFTKENSKKKARLSGPPKHIKSIRVRVRLEWRCGAKDSTAEAVLLLDSGATGAVLSTQWAKETQVPCVRRKVVAPIKDAS
GNDIPNSGLHYTKTLKMRIGDHVNDMRFELADMSDKKIDGYLPMSWLHEHNPDIDWESRSFTWRSVLCKAKCLVGQRRLE
FITEEELLAEDQAQVYLLGYAQFTGEDGKDIALSLPSEYKDYGDIFSQQRIDALPEHSEYDHKIDLMPGTSPPFGPIYPL
SENELKVLREYLNEMLATGKIRRSNSPAAAPILFVPKPDGSLRLCIDYRGLNKITVKSKYPLPLMNELRDRLGKATVFTK
LDLKNGYYLLRMAEGEEWKTAFRCRYGLYEYTVMPFGLCNAPSTFQSMINNVFRDLLDEGVIAYMDDILIYSETIEEHVS
LVRRVMERLRKARLCVSIKKSTFHQREVEFLGYRISDRGIMMTTEKVKSIEVWTPPKTVVDVQSFLGFANFYRRFIEGFS
KITKPLTDLTKKDAKWEWGPRQDEAFSHLKAMFMASPILAHFDPERLTKLETDASDFALGAILSQLCEDNRWHPVAYHSR
KFSPAEINYDVHDKEMSAIVAAFKEWDHLLRSVSDQITIYTDHKNLEYFNSTKILNRRQHRWAEFLQPFNFKVVYREGRL
NGKADALSRRSEYRPEGGSDSAKLGQEQTFFRPGQYLDSQExDILRPQLLQLCQGFRLKSGMLDELKLATAKDNTYQSIY
KSVAQGDKKVDPNFSIEKDFLLYKKRWYIPEDQGLKERIMQAEHDSRLAGHFGTYKTIGKVKANFYWPKMEAYIEDYVRS
CDVCQRVKTVRHKRFGLLEPIDVPMRPWNAISMDFIVALPESEGFTKIWVIVDRFSKMAHFIPLATEVPIKELALIFLKE
IWRLHGLPESIISDRDSRFTSKFWVSLMGLLEVKLNVSTAFHPETDGQTERVNQTLEQYLRSYCTYQQDDWASLLPLAEY
AYNTSTSESTRVSPFEINYGFTPRTNWSGIVPDNKGIHLSTELLVKDWEGTWQDIRETLQRAQERQRKWHDKKRLPSPEY
ATLEDVEQGRAIKADRVMLNRKNIRTKRPMEKLDHRMFGPFVVKRRVGTRAYELQLPARWSIHPVFNVGLLEPYREDQTG
RRAKDVPIPDIVEDEPSYVISGVLDSRWYGGAKQRFPHRFVQYLISWEGYGPEENSWEPFEMLEGTGMQALSDFHKRYPS
KPRDHRVVDIPSSGNKRRRxTGSGRALWKR
>Gypsy-5_TMe_gag#LTR/Gypsy 132-2957 Big gag... [Tuber melanosporum]
MSNQAGHFDPAAAEAHQWRLRREAFADARGLGWEPIDLVLNATNIDLPDDCEAIVVQDPAVLFESFTQQKLEIPVAPERQ
GQGFSLADFTREVMEPYILLEVTKQMKEAQKQMQYWNEQAQARFRMEMATAAVEWMRIQQGMFIRQISNTRALAKRISAL
EEAARTGHQIDQDNDTIMTVAPPMEKNPQVNFVETLTAMLTNPQYQAYLTELGVQIAGQQPQVLVSPRRSPFHAQLEEAL
TPISQRRNRRTPSPATGSRLGDSGHRVDKSKVPPPPPQPAKDRVDLPDVTDTPTPSANVPVPDRPYQAAVNTPLPRPGHP
PVIVEPAPLPPMPTIPGAPRKHTDANTFFEELRRQGREGNPLGEERVRRPLSPGVTAFCYTGCTVVGGPHFPRATHALNC
PNSHSSQVYRKPEEEGSKMKKPKCSYCGSRLHVGPPALPESCLEFQQFVQGRYGVTPSSSAAAPLPDPPPMPLSRPGVVP
QGEGQQEREDSFDGYDRPFGGHSGNTGGGGDQLPPGRNVGAGGDPGDSSSSSSSDDGDADSIPDFSEFLGRRKPTWSEKK
KRSYDRRARRLLRALLSLSGAPGAVRSSGDTGSPKNKPKKPEKLGDVTPFKGDTTDTQRFISDVEIKFEYFRESVTEDMD
KISLVIPLLQGTAKTWYMGLHRYISEDGTRRVGMPFDPNHEFRTWEGFRKRLMASFGAHVDRDRALSEWTKLQMKAGQVD
QYLDSVMDLIVQLGYTDPTMIKDKIRMTMTSQLRNVWAQKTPHPTDVSEYMDLLRKTGHALQDNITFGETVTKSRSEXQG
KSEERLSTSRKQPKKKEKGSGKTNPKRSLSSAGTPQKQGNSEHANAHKNIPSTLIDKRKKESQCTRCGKPGHFWRKCFSA
DPVVSSAKGVKSITKKRKAEDAEVNEASNNKVRRIEAPPSKKLLEVRRSSPEIMEVDTDAEE
>Gypsy-11_NV#LTR/Gypsy 70-4126 via tfasty with SUTRVLEP_pol, 1 frameshift and 1 stopcodon. [Nematostella vectensis]
MAEVESHRTPGPLVLDAQASENWRKFIMQFEIYLVAKGKDEKPDKLKVNLLLNCAGADAIEEYSHFVFNEGESNESYEDV
CRKFKEHCQGARNVIYERLVFNQRNQKEGERMDNFVSELKRLSLTCEFGTLRDSLIRDRIVGGVLSNELRGELLKKPDLT
LQSAHDYCRTYEAAELQKFKFASPTGSQQPLSVHPVQGKERAPNPTCKFCGFQHRFTKPSICPALRKKCRNCQQEGHFAK
LCPLKGKKETPVSTVEQENQVESMGQGDRGGDPHLYFGSVELGTVSSPNSTKKSVITLRIAQKEVKVKADTGAEANVMPY
HVYKAITTQPLRKIHQPLKGWLADKAIHPVGCVRLPTQYKNRKIDLLYLVVHGEFTPLLSCEACLDLEVLKFMNLDLIDT
PERLAEETTQGNGNKPNAELLVEDPVLSQYQDCFSKKPGRLPNKVHLEIDPSVPAVVHPPRKIPISLLEPTREKLQEMEQ
DGIIVKEEEHTPWVSSMLVVDKRKEKDRANPPSKDSVRICIDPRDLNKALKRPHYPMVTVEQVANRLSGATMFTTLDACS
GYWQVEVDEESSKLLTFNTPWGRYRFTRLPFGISSAPEIYQREMDRLFAGVAVEIIVDDFLIHGKDISDVDRKVIAVLER
SREVGLKFNPKKIKLRVPEVSYVGHVFTSEGLKPDPEKVRAISEMPPPSDKDGVQRFLGTINYLDKFIEHKADLQGPISQ
LTQQVAVFTWEKPQQEAFEKLKAVITHAPVLAYFDNHKQTILNVDASSTGLGAVIIQEGKPIAFGSKTLSSCEQRYANIE
RELLAILWGADKFHTYVYGRRVIVETDHKPLEAIFxKPLNECPPRLQRMLLKLTKYDLDVRYVPGKKQIISDCLSRAPLT
DTTPVSEPEDVIGINLIENLGIENSTLKKFRDASSNDETSRVVMEYVLEGWPEDKDQVDELAREYWNYKEELSVEDGLLF
KSDRIVVPRSMRAEVLEDIHGAHMGESKSLSLARDYVFWPSMTAHIKDRVRSCQICNAFRNQQQRETLHPHDLPGLPWQV
VGTDLFEFAGHSYLIVVDFYSKYFEVELLRQSTAMCVVNTLKQIFARFGIPAKVISDNGPQYSNTRNIFSTTHEFKQFAE
AWGFQHVTSSPEYPQSNGAAERAVQTAKRIFKKAAAENKDPFEGLLKYRNTPFDDIGVSPAQLLMSRRTRSTLPTHRRLL
VPHPVDPHRVVKALAHRQASSRMSYDQHSRDLPPLEVGDKVRVRVNKDKEWCKAEVLPRSYVVEDEKGRVFRRNRRHIIS
VPKDTPMNPKMPVAPTYMSPQPQVVARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREVKKPQRLIEQC
>Gypsy-16_GM#LTR/Gypsy 24-4450  [Glycine max]
MPEHHTRQVTLDKLDDAVQRLSQGQISLTEGQASLSQNHHSLNIKIDNIHASLTTQIESLFDRLAAIAVPHSSPVSATQP
PPSPISRHHHLKLDVPRFDGHDPLGWIFKVSQFFDYQGIPEPERLTIASFYMDGPALSWYQWMHRNGYFPSWPAMLQALE
SRFAPSFYDDPQGSLFKLQQTGSVTDYLTAFERLANRTIGIAPSSLLSCFVSGLIPELRREVQALRPMSLPQAIELARLQ
EDKLIDRRRGSRPPFPAPPHPSPAPPQSFSPKPTTSPFPKSPTPLPSPRIPVKRLSAEELAIRRDQGLCYHCDDKWSHGH
RCRSRLHLLLADEDIENPDISPDPNPDPPLVSQISLNAMEGTVAPQTCRLLGMIGHHQLIVLVDGGSSHNFIQTRIARFL
ALPTAPTPPLRVMVGNGNTLDCDTLSPQTLLSLQGHEFTLDLFHLPLCGADIVLGVQWLKLLGPVTTDYSALTMTFPYLG
HTITLFADAPPTLTSASAHQLKRFAQTHSISALYHITPIPAQPVSPLPASPPTPPSITIVLNRYASIFNEPDHLPPSRNI
QHHIHLLPHSTPVNVKPYRYPHFQKTEIETQISSMLASGLIQPSHSPFSSPILLVKKKDGSWRCCVDYRALNSITVKDRF
PMPTIDELLDDLGKASCFSKLDLRQGFHQIRMAASDIPKTAFRTHQGHYEYCVMPFGLCNAPSTFQAAMHDALRPFLRKF
VAVFFDDILVYSPDISTHASHLDSVLSTLLDKQFFLKASKCLFAQSQLNYLGHIISAQGIAPDPDKVQAMIDWPIPTTTT
VLRGFLGLTGFYRKFIQGYASVAAPLTALLRKDQFLWSPTASTAFDTLKTLMTQAPILATPDFSLPFILETDASAVAIGA
VLLQRHHPIAYFSKVLCPRLQQASAYVRELHAITAAVRKWRHYLLGSSFTILTDHRSLKDLMSQVIQTPEQQTYLVKLLG
YDYDIKYKPGSSNIVADALSRLPQGECFSFSVPHYDFMDKLRHTLMQEPQYRDLVHQVRSTPAAHPSLTVHNDLLFRHHR
LWLPFPTHFTEVLMEEFHSTPLGGHTGATKTLHRLRQSFDWPNIRSDVRRFVAQCITCQQTKYEPQKPPGLLQPIPLPSA
VWEDLSIDFITGLPLSKGYTVILVVVDRFSKGAHFGPLPTSHTAHKVACLFFDMVCKHHGFPRSLISDRDALFLSSFWRE
LFKLSGTKLRMSTAYHPQSDGQTEVVNRVLEQYLRSFVHHKPHHWSRFLSLAEWSYNTTVHTSTGYTPFEVTYGKAPPSL
IDYVRGTSPIDAVDSMLTDRTELHNTLLRRLRKAQEFMTTSANKHRRDLQFSVGDWAYVKLRPYRQKSVAPAYSKLSKRY
YGPYQVIERIGSVAYRLQLPPSSRIHPVFHVSLLKRHQGPLPLTSAALPPSSVEHHPLVTPLAFLDWQWDTSVTPAARKV
FVQWAGLPPEDASWESWSDVKHTFNLEDEVPFEGEG
>Gypsy-15_NV_pol#LTR/Gypsy 1794-6209 more than just pol [Nematostella vectensis]
MDDLHFYTPTNEHFQLDESVFPNNDSPDTRDQTVESFEINNNDFSSQENAQSNPNLDNNDRFRPVRRTIFSDEVIQVEER
PPRKCFPPTEVMFNFEEGTTPQVLAEGHSICDETFNDNHQSILDMDFGMDNSILQQPMSPSPDETDDNLPEINTIINTSN
SHFGNQNNGTDVTVNVPFLTTDNLMLHGQISGHNVDLLVDTGAAISCISSSTWRRLNTTNNLQLRDPSSAALQTVGGHSL
TILGIFTADLSLGNRVFTLDLLVIKNLTYDAILGKDFLMQHNAQIDLASRSLNLRPPFQCPFNEFPSLDSRITEPQTVHA
RQTFTIPPLSESIMPVRIAHCEFTAGQPLLITPSHSLQTRYNIIGAHVLSTANTKGITHIKLLNPGSQPVTIREHTNLET
IEPVTDVVASLPTHSTSYTNPPTTTPDIPLEEARKLEELSNAADLTTSQKALLQDLLIQYHDAFAFTPEQLGYTDIVQHT
INTGNARPIRQPPYRTSPANRAEISRQTEQMLEQGIISPSVSPWAAPVVLALKKDNTMRFCVDYRKLNAVTVRDNYPLPL
ITDVLDSFSHAKHLTTLDLRNGYWQIAVAPESREKTAFITHEGTYEFNVLPFGLVGSPSCFSRLMSHVLRGLNWKSCLVY
LDDIIVFSTTFEEHLKDLEEVFQRLRNANIKLNPKKCTFAKSEVEYLGHIVSTAGIKPNPAKIKAVQEYPRPKNVRDVRS
FLGLANYYRRFVKDFAKIARPLTRLTRKDVRFKWSQDAQAAFDLLKRALVSAPILAYPDFNLTFQLYTDASAEGIGLTLG
QIQNGREVVISYAGRDLSPSERNFSASEREALALVTGIRYFSCYLHNKRFEVYTDHAALKYLMNIKHDPTGRLARWSLLV
QQYDFEIKYRPGKSNGNADALSRRPYGTCTLGAVDTPGLQTDDIRDKQRRDVQLFPMIDYLENEVLPEDDRQARRILLTA
HTFYLSEDGALYHIDQHNLKTQKGSYSQLVIPESLRYEVLVNIHDDVTGGHLGVHKTYDKLKARYFWRGMFQDTEHWIKS
CVDCNMRKTPRNRHKAPLIPIPVDGPFDRIAIDAMGPFPVSDDGNRYILVISDYLTKWPEAFAVPNITAPVVARILVDEI
IARHSCPNQLLSDRGKNFLSELVQEVCKIFSIRKVQTTAYHPQCDGLVERSNSSLIQSLSMYLDVKQKDWDIFIPSVLFA
HRTSISDSTGDSPFYLLYGRSPRLPIDVSLLPRKEVSTSIAEHRARIVQGVELSQRIAHSLIQKAQQKMKAQYDRTSKPA
TFTVGQRVWVYTPKTKKGLSRKLQNKWWGPYRITQRLSDVHFRLRTTTNRPVSVTVHANRMKPYYDPADRPTLPPPVIPE
DTLPLHPDDLPLEDEIPSEGSADEADPNPTNGPIASPSNTPDPPPIDNVEVFSAEKLLKKRAKNGRVEYLVLWADSQDKT
WEPQENIFDHRLIEEFDRTHSSSHRDTDQNS
>Gypsy-16_ST#LTR/Gypsy 30-4570 via tfasty with Gypsy-22_ST, 2 frameshifts and 1 stopcodon. [Solanum tuberosum]
MVSRMEGRVEQVETNLTGVREDVRKLEGWFQEMTETLARIEAQGRTMMAEASPSQTRSIGNQEEGSNVNWAGEKDGKKFR
KLQLPVFEGEDPLGWIFRVERYFAVNEISEAERLQAAGVCLEGKALNWYYWMESRQQMLTWEDFKRELLNRFHHSQKINQ
YAVLMGLKQVSTVTVFREEFEKVSASMKEASDGMLSGVFLNGLKEEIRAEVMLLQAQTLREIMEMAQKVEDRNSVLQQVQ
GFKFESGRGSASNTSWVxTHYHRVANILESRDSRAGVASRNTDSPVHTATKSTSFNGTAAAKSEGQFKRLSDSEFARKRE
LGLCFRCDEKFGPNHRCKNRQLNLLIISEAPNKDEDEIEEFFESTGEDVAEGEMKGTMMVLNMNSVVGLTGGRTMKLVGQ
IHGQDVIILVDSGATHNFISSTLAHHLQLPIKKTKGFEVTIGNGQQVSGSEVCKEVRIDVQGVQINQQYFLFELRGTDVV
LGMEWLATLGEMRVNWKLLTMKFKVQNWKLLTMRFKNAGRLVSLRGDPAMVRTVVSLKAMTNLLKKGNQGFLVELNQVTI
TEDEAAITSKEIEKLLYDYPEVSEQALGLPPRRSWDHAITLQSGAQPPNIRPYRYPHSQKAEIERLVKEMLAAGIIKTST
SPYSSPVLLVKKKDGSWRFCVDYRALNDITIPDKFPIPCIDELLDELGGATIFSKLDLKSGYHQIRIQAGDEAKTAFRTH
EGHYEFMVMPFGLTNAPSTFQSLMNDIFRDHLRKFILVFFDDILIYSKDYASHLGHLKAVLDILKQNQLVINKKKCTFGQ
LKLEYLGHIISSEGVQADPSKIDSMISWPSPRDIKSLRGFLGLTGYYRKFVKDYGKIAAPLTDLLKKDAFSWGEHAQQAF
EALKLAMTQVPVLAMPNFSQPFVIEADASGFGVGAVLMQNGKPISYFSRMLSSRARQCSVYERELMAIVLAVKRWNHYLL
GHHFIIKTDQKALKFLLGQRVMDENQQKWVSKLMGYKFEIKYKPGVENRVADALSRRGESSELYAFSIWQYKDKEEWDQE
VQRDTKMTSILQKSISGQQSDDNYSLKNGCLLYKGRLVLPKGSSRIPGLLKEFHSSPIGGHSGYLRTYKRLSENIYWEGM
KRDVQDFVARCEICQKNKSQTLSPAGLLQPLPIPHHVWEDVSMDFITGLPKSHRFDTILVVVDRLTKYAHFIPLSHPFNA
KDVAAVFIKEVVKLHGFPKSIVSDRDRVFISQFWKELFKLAGTTLRYSSSYHPETDGQTEVVNRSLETYLRCMAGENPKE
WSHWLSWAEYWFNTSFNRSAGMTPFKALYGRDPSSIFHMDDTTSAVEEVNEQVRTRNLILTELKEHLLQAQQRMKNQADR
HRRELTFEIGELVYLKLRPYKLRSLAKKINEKLSPRFYGPYKILEKIGPVAYRLELPVGARIHSVFHVSQLRKCLFPTTS
AQNLPPFLTQELELQVEPEAVRQTRKLINGKLEVLIKWKNLSEFENTWEEYAIIDQQFPDFHLEDKVILIGKG
>Gypsy-17_NVi_pol#LTR/Gypsy 2747-6358 [Nasonia vitripennis]
MYGKRRLKSQNKADAAWKTEKASLVELNKNLDIYPTKINAVCDEKSCTQKNDEADLKAISEKSGYLTNKDKIEPKAICDI
LNKAPDILNNQRENAEIRDNNFEYLKFTPSQWDILTIEEKEQLAFSDYLQDIETVVSEAPEFLIKNSSYKLIRDDLIHED
IYTTDKLYSLPLKSPNLLYSTVSIADNKFKALIDSGASKTFIGPKIHKIATKNALLVNKNVTGRVTTPLGYTEEIREIIH
TPIKFQDRIRVIETRVLDCLDQDCILGIDALHSFGVIADFTNFTYTFGSKPFDRYTFEKRFAETSETAEACYGLRELSPS
EEKILEEFLNNEIPKSSGKLGKTSLIEAVIDVNNHPAIKQRPYPISPTVETILFNEVDKMLDEDIIERSNSDWSSPVHMA
RKANGTRRFCLDLRKINAIIKKDAYPLPLMGSILDKLRVARYISTIDLSQAFLQIPLEKKSREITAFAVPGKGLFHFKRL
PYGLSNSPGIFQRLVDSLIGPELQPHVYSYLDDLIIVTETFDEHLKWLKVVFDKLKHANLTINKEKSKFCLSEVKYLGYL
VNKNGLQVDSEKVAPIREYPVPKTLKQIRRFIGMTSWYRRFIENFASLIQPISSLLKKDKKLEWGPEQQTAFETIKERLM
TAPILMRPDFSKPFTIQVDASTVGLGSVLTQIIDDKERVIAYASRTITDAEKNYTTTELECLGVIWAIEKFRGYIEGTHF
KVITDHSSLQWLKSLKKPVGRLARWSMYLTAYDVDIEHRKGAMHHVPDALSRMYENQLDEVNTLNDDNDDWYKGRIDEVR
KNPKKYHNWHIAGDILYHKTEDTFLDTIKRDQSIWKLVVKSKDRDRVLFEAHDDTQSGHLGIDKTHARIAKDYFWPSMYK
DIVNYVKRCDVCQKVKPEQFAPPGMLGQRIIEHPWSVVAADIVGPLPRSKKGKRYLLVIQDLFTRWIEIQPLREATGKSI
KDALHDLIITRWGTPRVLITDNGTEFINKTLIEYTKQLNIKHSTTPPYHPQANPVERVNRVLKTMITAFIEQDHREWDNH
ILDFRFAFNTSKHTSTQVTPAFLNFGREPLPIHSLRKEIENSDIIERGNVDQWAERLYRLRAIRDWVVENSENAHNRQAN
YYDKSHRNLTYKVGDSVLMRNRVLSDMSKNFAAKLAKPYKGPYTVTKVLSPLVYELVSADNQIVSKIHICDLKPYRQNTC
IPX
>Gypsy-17_DWil#LTR/Gypsy 115-4680  [Drosophila willistoni]
MDSINPDDFSKSQLQIWCKNLGLPDTGTKNVLAERLNQLSPVARGQHPKDGAAPNGGLSKRADPPEKDCLEHLKSILYSS
DDGAGQTQNFEADLFQGQQQQEVTANEQNKAENGQNEAENDQNDAESETQTENESITNEPQEISKATNEKSNEKSNNGER
NATNEKSNEKSNNGERNGTNEKSNEESQKEENIVKYTLEKKLELLCKEIELVRRENEFLRLAGNPESGHSSSWLATKTGD
QVLAKDVKDFVLDFDGNGNVYSWISSMLHLERSFNLNENNLRLLVFGKLKGKALDWIHSNPECLCQPVKTIFDAMGKVFG
SKKTNVIIRREFEARKWCVGEPFLNYFNDKVGLAGGLRLPEDEMVEYIVDGIPDRHLREMACMQRFGSKDDVLAAFVNIV
LQREKPVSLPNVSAKKKPTFRCFNCNCLGHLAADCNKPIRATGACFGCGEMGHRVADCSQNKKKPAAISVSLDNIRIVKV
HIGNDVFSLGCLIDSGSAVSLIKKEFVSDEIKLEPGPEHTYFGLNKSKLEVFGSILCYVEILNKNVYVRLLIVSNESMGS
PILLGRDFMKICKAKIVLQLDDDLCKESMAESIKLSHDLSKEDNFENQMLNIDCDVVNSKYSVGKSLSFNETTMFENIFS
KFYLERNRPNEPKVKCEMKLTINDISPFSCNPRRLSYSEKAELQKIIDEYLSKEYIRPSESEYVSPIVLVKKTTGELRMC
VDFRKLNKATSKDSYPIPLIDDLLDRLAGKTLFSKLDLKNGFFHVYMHEDSVKFTSFTTPLGQFEFLRMPFGLRNAPSTF
QRFINRIFADMIRDEKVIIYLDDIMVATKDFDTHLEILKEVFDRLVDNKLELRLDKCEFLQTSVKYLGYSITGKGIKADD
KGIQAVKDFPVPTKVSEVQSFLGLCSYFRRFIKDFATIAKPLYDLVRKDKKFMFGNIELSTFENLKSKLTEAPILALYSP
NDETELHCDASSIGFGSILLQRKSDGKWHPVFYFSKRTTDVESRYHSFELETLAIIYSLKRFRVYLQGKHFKIATDCNSL
TLTLSKREVNPRIARWALELENYDYVLEHRPATRMQHVDALSRNTNIMVVETNSFEDNLVICQNQDDEILRLKSMLERSE
HSSYEMRNGLIYKKLQNGCLAFYVPKNMESHVLFKYHNELGHTGIDKVVEVITKSYWFPKLRKKVEQHVNNCLKCIVFSS
KNGKQEGHIHNIPKPDVPFEVVHIDHFGPIDVKGSTKKHVLVVVDACTKFVRLYLAKTTKSKEAIEALKEYFRSYSRPKC
IVSDRGTCFTSNEFSSFLESCNIQHVKIATGSPQANGQVERINRSLGPMLAKLLASEENVSFGQAIEIVEYTMNNTIHRS
LGQHPSVVLFGVGQKGRQVDELKDYLLEDRSVERNLESVRAKAKEKEKKLQEYNECLANRKRRGPKVFKPGDYVVVKNFD
THKGVSKKLVPRFKGPFKIVKCLENDRYVISDVDGFQQSKIPYTGIWSITNMKPWFNWSVNVNENSIKEKVSMLSKGRHK
ED
>Gypsy-13_HM#LTR/Gypsy 166-4977   [Hydra magnipapillata]
MSTISLPCQAPGCNVVIEGPSEAIAIALFNSHQLHHPPNSIDIHSAFSKHKAPKMDRPHIGQDISEEEWANFISRWTLFK
RCTDIRQEEMTAQLFQCCEDDLGNQLLKENPMIINENDEAFLKAMKKLAVIPVATCVRRAELLQMRQGHNESIRSFYAKL
KGKAATCNYTVQCHCHPQTTVDFTDVIIRDIVVAGLSDTDIRKDVLGWVSLDTASVTDIIAFIEGKEMARNALGCSSTTA
SVSTFRKQNKSNTQSSKGTNITAKCPDCSESYSLFTETSRGWNKKPHKLCLDCWKKLRSRTSKINNRIIPNDKKSNATKD
AEAGGLVLKLSAIEHSNKKIRSQMKTNVKRPCTGINHHIFTHDGWATAQLLVHPTIQLRVTTNKSDYVAFGIPFPPIIPK
YIQVITDTGAQSCLWSRKGFDSAGFNANNLIPVKHSMSAANKTQFRIDGAILLRLEGRQSNGHKVECAVMVYISPDANGF
YLSKEAMTQLGIISKDFPEIGSALHGAINSGPQTIGTKTSSENNSSHVCNCPKRSLPAGAPTKLPFVCCPENNERMKAWL
LERYSASTFNTCPHQILPDMEGPPISILIQENAKPVAAFTPATIPIHWQDQVEKDLIRDETLGVIEKVPLGEPTTWCHRM
VITRKHDGGPRRTVDLSPLNKYCYRETHAMKSPFQLARSVPRNSWKTVTDAWNGYHSIPIRVEDRNLTTFITPFGRYRYI
RAPQGFVSSGDGYNRRFDEILADFIGKQRCVDDTIHYDDDLVKHWWRTIEFLELVGKAGIILNPQKFQFAKRIVDFAGFR
ISENGVEPLPKYIDAIRSFPTPSSITDIRSWFGLVTQVSHYAQLRETMAPFRVLLSPKSKFYWSDELNTLFNASKEKIIN
AIKDGVQIFDITKKTCLRCDWSKLGIGYYLSQKHCECKSDSPDCCIDGWKITLAGSRFLSSAEQRYAPVEGEMLGVAWSL
EQTKYFTQGCDNLMVVTDHKPLVKLLGDRTLDEIANTRLFRLKQRTLPWKFTIQHQPGKTNLAADATSRYPAENTKESVN
SATCNQNTDFDNTESLIIASIRNDIDKMIAVTWDSVKAETEKDTDFKALMLAIENGFPKNKNNFIPNLLPFWEYRNDLMV
SDGVIIYNDRIVIPPTLRKEILDVLHSAHQGVSGMTARAQATVFWPGITHSIQSKRDNCCSCNRNAPSNARLPPIRPHIP
VTPFECIFADYFEFRGWDYLVIGDRLSGWTEAYRIKSGTSEMSAKGLITCLRKLFTTFGVPEEISTDGGPQFTSGETKEF
LQQWGITHRISSAHHPQSNGRAELAVKSTKRLLENNVGPNGDLNNNAFVRAMLTIRNTPDPTCQLSPAQVLFGHPIRDAM
PRIKSRIPMFNNDQFLKTRRHAWSAKEEALRTRYAKTLESLQEHTRFLAPLHEGDSVFIQNQVGNHPKKWDRSGKVVECK
ENDQYIIKVEGTGRLTLRNRKYLRKFLNPLKSYETEVALTTPPKTSSSHYNSADLPTPFTEYVPESSNKVIPSQPELAPS
TVLLPPSTLAPAVPPLPLPTTPVPLPLMPASLSTSSPHLAMPPLLNTEVVGDQPLKRSSRLRIPKKFYQPETGKSLTLDD
FKK
>Gypsy-11_ST#LTR/Gypsy 166-4545 via tfasty with ATGP3B, 1 stopcodon. [Solanum tuberosum]
MDEFRRLLATSTNTHGSVRPLPKGIPRGENRPGNYQLPTRNYQMDFPKFDGQGLREWLYRCEQFFDVDETPEDSKVKLAS
CNFEGKALQWHQSYMKHMMSRDWPRWTEYVGSLYARFGAELFDDPMGDFKDLRxVNFVQDYVDLFDELLTRVELSEDQVV
SCFVQGLKPEIGLPVKMLAPRSLAKAVNLARIQEQTLVVQKQVFSGSSVLSNPRTNPTFSYRSTYQSGRSHPNPSKNSTT
FSNNPKPNLKNVKLLTPAEMDERRSKGLCFNCDEKYVYGHVCKKKRQLFSMEVEEDSEGVEELEQEVAVDPAEFLTTIGH
SLETDDQGAILPHVSVHAMNGLHDFRTMRVTVSIKGKVVQVLIDTGSTHNFLDLNTAKRLGCVLTAISPFPVSVADGKKM
HCQYICKKLVWKMQGVSFDSDMLVLPIGGCSMVLGVQWLITLGDIMWNFKQLKMEFSIMGHKVSLRGVKPPAAKLVQQSG
MDKLLAKPAELCLISVGMYLGEEYSGETGSFFSINTCDEVGKDKADIQEILRDFNDLFEVPTELPPSRDHDHIIVLKEST
SPINIRPYRYPAIQKDEIEKLVNEMMDSGVIRPSTSPYSSPIVMVKKKDGSWRMCVDYRELNTRTIKDKFPIPLIEELLD
ELHGAKYFSKLDLRSGYHQIMMFEPDIPKTTFRTHQGHYEFMVMPFGLTNAPSTFQSLMNQIFLPHLRKFILVFFDDILV
YNSKWTNHLSHLRENFKILRENVLYVKQSKCAFGVQQIDYLGHIISQDGVAMDGSKVDAVVNWPQPTTLKGLRGFLGLAG
YYRRFIQGFGIIARPLNDLLKKGNFKWTEAASQAFGKLKLVVTSAPVLALPNFSTEFIVETDASGGGIGAVLAQNHRPIA
FFSQGLSAKNQALSVYERELLALVSAVQKWRPYLLGRQFVIKTDHQPLKYLMEQRITTPSQQKWLVKLLGYDYLISYKKG
KDNVVADALSRKEEPIQLCSISGVQTQLLEDVKNSWLQDPVLQKLITSIQTAGVTKPYYSYHAGILSRKGKMMVGSVATV
RKDLIALYHDSASGGHSGITATLQRLKQDIYRKKMKQDVYAYVRCCDVCQRCKSENVAYPGLLQPLPIPDKVWQEISMDF
IEGLPKVTGHEVIFVVVDRLSKAAHFMALKHPYTAVEVAQAFMNGVFKLHGMPKTIVSDRDPVFTSRFWKELFKLQKVTL
LTSSAYHPQTDGQTEVVNRCQCYLRCMTFEKPREWPQWLALAEWWYNTSFHSAINMTPYAVVYGQTPPPLLPYMPFDSQL
DMVDRSLQAREATLRCLKSHLARAQSRMKSQADKGRTDRFYVVGDWVYIKLHPYRQTSLKSHTFQKLSAKFFGPFQIIAR
VGSVAYTLQLPPDSRIHPTFHISQLKKKLGSHIVLATLLEVHVDAGHILLTPEAVLDRRLIKKHGKPATQLLIKWFNVSE
DDSTWEDYQSFTQRFPHFNP
>Gypsy-11_SMo#LTR/Gypsy 114-7049 [Selaginella moellendorffii]
MSQRRQEYLARLVEAQEREERRTKQRREREARILARNLPLVHEPESPRARSANPRPSSPVSEQENNQEQEDEWQEFQSSP
PRQQPIEQRQQPPIQQVQQPRQQQAGNMATTKMKYTIFNGMGDPDAHVTAFENTSTANDEADAADRRKLFPATLQGVAAE
WMAQVPAATDWAALRASFLATFRPVGFSQRLMSDLSHFQLLPGESLQSYTLRFKGLILKKQPQPTEEEQAQYYTNGLPHA
VSFHVSCHNPQTLADAIRLAGTWEQAQLKMRHHFSNLGLGAFGDGMMNSMMGGLGSTPQQPIPTGQQPFGVFGTGLGMMD
YSRQQQQQWQASTSAVPNPAATTVDIQAEMKKIKEDMVEAMTKKMSDLQLNWVRGVQSRPQPVRQRENIWCVRCNNYGHY
PNECPQPVVNREKCQYCRRTNHRSEDCFYKPGNPAIPASYIQTAPSSPPSSARAPTFFQRPFSPPVQTMSYEPVIQGYTP
DMIPVYAAAPIPGGRGRGAPRRGPVQCWNCDEMGHISPNCPHPRKQIGYQPICGICQTQGLHEQDNCPHKLKPSKGKGVV
ESNAIFVQQAAPESGVMTRARRRQQMENSVIEDAEEKDDPEKIARKNRKEKRESKQPKSDPPATNDQDKPVPDSEITTPA
RALDKGQGVAKALRKKWKRVLNLETQPYNILQDLDSQRPNITFAQLLQLAPGMRKVLAVAMKGHREVLVNSAWPLITDLS
SPCIDVETQGEPIRRAVIDGGSGVNILPEETWRKFNLPEPVPVPFMVKMADQRRVQPRGIVTGVRTQIAGLVFHIDFVVL
RMKEGMLGYPLLLGRPWLLQAAAVHNWRTGILAIGDGNNRVKVQVHFRPRARRVLGAEQEDEDSSDTSNSSSQTSSEDDE
EDSSSTASCEELEMVDVAAIAKNSWGKPLSACNTEELESWLWGKDGELPFGSVQVVEEETGARQWRGRSPFPRYIATVLH
EKWMDGILNPDVRNNFLSEELVATCQLEAIPVEQPCWAMRAGELKRIVYRVPGLTIKIPEFPVDLDFLVAPWKMDNYILL
GRDFLKAARVSHQWNDPLHLWIPNPHGSDRVQIGMEEGDEPREQVFITVLESRAENQAVPMPVAFQTVDSSEAWMGGTKA
MHLTASLENVELTAMVDPGALGNFLTKDGAARASLAITALPEHYIAVCADGGVFPVLGLVSSNVVIGEGDFHEVPFYVIE
GTVTSVPVTLGAAWLFQVQASHDYVTGTLVVEDDNHRYRTIILSDISAFDYHFSYMLKVEKASRLKSKEVTACKDRSMLK
SSPTQLIQIGNGPQDLAGHQLSVDVVPTADLEAGNYPSYFFKEQVADLPLKETSARSQVDSDYFGRAPQTQAVFMEQVGD
ERRELLVGHQLTKEEVEAYRQLFLEFRDVFAWSYAELAGVDPELVQHKIPLLPDAVPQRQRAYKMNPSYAKAVREELQKL
LDAGFIEEVEATDWLSPIVVVRKKNGKLRVCVDYRRLNAATRRDGFPLPFTDVVLDGVAGKELYSFMDGYSGYNQIQVAP
EDRAKTAFVTEWGCYIFRVMPFGLTNAPATFQRVVTSAFRSLLHESVEVFLDDFSTFGSRGKHLEQLRAVFQQCRKFGIS
LNPGKCQFGVTHGVLLGRVVSARGLEVDPAKVNVVEELEAPQTVRELQAFLGHVGYHRRFIRHYADVAFPLTGLLKKNVP
FAWTPECQASFVQLKRALTTAPILKPPDWNLKFHVHVDTSAFAIGAVLCQPVNGWDHPIFYSSRQLSLAEKNYTATEREG
LGMVFAISKYRHYLLGKPFLFYLDHQALRYLINKPCRHGRITRWLLLLQEFEFEIVLKPGKSHVMPDHLSRLPGEPAREG
VYDELPDAPLFLLEGGQVSAEIPATFSTRAEAEELLLYQVVAVPEWYQGIAEFLAAGRFPDDMPKVAQKRLLYQSRAFTL
IAGQLYKEGRDGVLRRCILPHEVQQVIGSCHDSPYGGHYAAAATIRLVLQTGYWWPTLQQDVAKFVRSCDPCQRVGRPTR
RDAMPLHPIIPALPFEKWGIDFMGPFKPTRHRRNRYILVCTDYVTKWVEAEAFTEDTAEKVAGFLYKNIITRFGCPLELV
SDRGTHFINAVIAALTAKYGISHRRSTPYHPRANGQVERTNKTLCDTMTKLCNASASDWDTKLLDALWAYRVAYKVTTRF
SPFQLVYGQEAILPLELEVPSLRTAVAHNYDWDGAVQQRLEQLEKLDETRLLAFQAREVLQRQRKKWYDRHLRAKSFQEG
DLVLLYESKYWKRPGKLKIRWIGPYRVKAVNINGSVKLEDFAGNPLPTPVNGARLRRYQVPSGEECSGDGAQ
>Gypsy-12_BG_pol#LTR/Gypsy 1409-5267 via tfasty with Gypsy-32_BG_pol, 2 frameshifts. [Blumeria graminis]
GKRVNPGHSRAQGVTKSLVDDLSVIVKNLDSSPFLLEIMLNKCFYVDALMDTGCLCYAAFSHSFVKRHKLPQISIKTREL
RLAKKDSQQRVINKLTYVDTDIDGRRENNYGYVIEDLFYDMILGDPWMRANAVVYDARRRAIRFGSKGGLIVKAKGWEDR
MSQSSKAKINYLKVKLGSAHQVLGSQFAAIATRVRGKKDQETKLFAASMFDINKALETKRKQTPDEIKAGLPLEVRDNAQ
YFTEDENHELPPHRPGVDTKIELIKDEQGREKEIPFGPLYDMSRAELLVLRKTLTDHLDRNWIRASSSSGGAPVLFAKKS
GGGLRFCVDYRALNSITVKDRYPIPLIKETLRQLTKATWVSKVDVRAAFHKLRVREGDEKKSVFRTRFGSFEWLVTPFGL
TGAPSAFQRYINSVLGEFLGDFCSAYLDDVLIYTTGDVVDHWSKVNMIIQRLGLAGLKMDPQKSEFAVKQTKYLGFIVCL
GEGIKVDPEKVKAITSWQATVSTKGIRSFIGFANFYRDFIPNFGRIAAPLLSLTKKHAQFQWEAPQQKAFEELKQRFINS
PILAIWDDEKETVLEADSSGYVLGGCLSQKDEKGQLKPIAYLSKKLTSAEVNYDIHDKEMLSIIRCMEEWRGMLIGLSKP
FTVLSDHKNLRHFMTIRTLNERQMRWSQFLSNFNFIIKFRPGNQAARPDALSRREQDMPQGSDDYRIKNRDVQLIKDSWV
SGVATRNRLKQVEKNNTNIIPKGSSIFEEENFQTLWDKALREDKDISTLYKILEKGERSLPPTLKHLKISLAECGFDTRG
ALRFRDRVWIPNHEPLQTALIQKTHDSQVTGHPGRDSTLAILSRNFFWPGISKCVRRFCRNCDVCGRSHVWRESKKGLLR
PLPVPDRFNSELGIDFMTDLPAKTANEPRYLMVVVDRLKGGVALEDMTSMKAEHCASVFLRLHVRHHGFPNYITSDRGSN
WVGDFWTELCRLTGVKQRLSTAFHPQTDGATERMNQEVLGYLRAFITYAQFDWKELLPCAMLAINNRTVSSLGMSPFFAE
HGYNIEPIQLVNPKDKPSAPEKRAQNFVKRIHEAEELAQASMASSQQRMEEYANRKRSEAEIYKVGDRVWLNLKNIQTPQ
LSKKLSWINAKYQVTKIIDSHSVELNTPSGIWPRFHVDLLKRAATDPLPSQIIDDVQPPPIQHDMQNDVNDYAFENANIQ
VVEKILRSEKTKVGRGHWRLLLMKWRGFAEPTWEPRENLEETEALDIFEAKYGKGDNTGEDAGAIIGRRKLTKSSLLANS
KTINIRQ
>Gypsy-12_HM_gag#LTR/Gypsy 27-809    [Hydra magnipapillata]
MDRALRPSRLDTLPNSPSATKLFKHWLRTFEYYLDELPQELNKLKILTNFVVPDVYEIISECPNYEAAIQALQSVYIKPS
NEVYARHLLATRKQQPGESFDEYLHALKVLAKECNFKQVSAIEYRDEYIRDAFITGINSQVVRQRLLENSTISLDEIFSK
ARTLESAQKNAENYLQYNTSDTTVAAITKKPKQFNSNSVSNCWNCGNQRHAKAVCPARESICFKCEKVGHFAKLCKSSKL
TTAGMNLVDQPLNSYNPSLT
>Gypsy-12_DAn_gag#LTR/Gypsy 80-973  [Drosophila ananassae]
MAENEDFADAQDAAQFTSTAMIQSVFGKMPFPNLQSITNIEMFFTKLESWFALQGLGARKEQEKFAAVIAYADPKYLEQV
HDLVNNPPETAPYSTLKEAILSKFTDSEMVRLDRLATGIQLGDSRPSHLLCQLQQTKATCDESVVRRYWIKRLPPPVRAV
IVGMIGSSPQTKLSQLAKAADAVMDSLNDDAADHVYAFSKNKQQQSHQEERVITLTKRLDDNDKALQQINNKLGQLLNHN
QTRGRNNQRPQNYYRNNAPSNDRSSQQLCWYHNKYGRDAQRCSQPCSFTAFNEDDQKN
>Gypsy70_AG_pol#LTR/Gypsy 1642-4836 [Anopheles genus]
GYAGDIGSQVATISPVSSRLMVIDRRTNQRYLIDTGADVSVLPKPANYTPPTPSTMRLFAANGTPIMVFGESLRTLDFSL
RRPFVWNFIIADVSSAIIGADFLRHYHLLVDLRQRCLVDAQTNLRVPGLPDTTRQTAVKVCDANSPMADLLNEFPTLITN
SPGVRMQSEVVHRIETTGPPTFARSRRLPPDKYQAAKAEFDSLVQLGICRPSSSSWASPLHMVKKADGSWRPCGDYRSLN
ARTTPDRYPLPYLQDFTMQLGGKTVFSKVDLQKAYHQISIHPEDIPKTAIITPFGLFEYVTMPFGLRNAAQTFQRLIHDV
LRGLNFVFPYIDDIIVASKTPEEHREHLRLLFARLTQHGLTINLAKCEFAQPEISFLGHRVTSEGILPLEEKVDTIRQFP
KPNTVMELKRFLAMINFYRRFIPHALRAQGPLLEMIPGNKRRDKSSLTWTPATDTAFEDCKRQLAQATMLVHPVPSAELS
LWCDASDFAAGAALHQVIDGQMQPLGFFSRKFDNAQRRYSTYDRELAAVYLAVRYFRHQLEGRSFHIYTDHKPLVYAFRQ
SLDKASPRQARHLDFIGQFTTDIRHVEGQENVTADLLSRIEPIQSSTSIDYEKLAEDQTRDPELADILSGKTRTDLVLQR
VPIPGSSMALYCDCPAGIIRPYVTKPFRQQLLRAVHQMSHPGAKTTTKLMTERFVWLNIRRDTRDFVRHCLACQATKVQR
HTRSPLGRYPVPDARFAHINLDLVGPFPISNGHRYCLTIIDRFTRWPEAIPIPDITSTTVAAALLSGWIARFGVPSFITT
DQGRQFESTLFAELNQLLGIKHLRTTAYHPQANGLIERWHRTLKAAICTKNTAHWTDHLPIILLGLRTAYKDDIKASPAE
LVYGSTLKIPAEFFNSSPMTSLPDTTEFTKSLKYAMNTIRPTQTAWHDKATPFVHSDLRTCSHVFVRNDTVRPALTPPYQ
GPYKVLRRSDKSFEVLINERATNISIDRLKPCYSLQQPEPVTQLTPPSAAEYTPPPPALPPPASPPSAPPPPASPPPTEP
SPPNDFSTGVTRSQRRVIIPVRYR
>Gypsy67_AG#LTR/Gypsy 117-4706 [Anopheles genus]
MNSGDGAMEVPMDEDQRRSSLGRIDYRAMTAQQTGEVPSVYDPPGHVQPGSRGYVSQQGQLTPRPVQLGPSPSQPAPSQS
APLPSVQNGQMGQQPLDNAVLQQTLHLLQQQLKQQQQLISQMLQQQQSAPPAQLQPAQQYQPAGPSNPELILDALANSIA
EFRYEAESGVTFEAWFTRYEDLFAKDASRLGDEAKVRLLVRKLGTPEHARYISYILPRSPRDLSFEETVDKLTALFGCRE
SLLSKRYRCLQICKKRTEDLIAFSCRVNRACVEFQFASMNEETFKCLMLVCGLKDEADNDLRTRLLARIEERNDVTLEQL
SAECQRITSVKGDSAMIAGETSERVFAVHSGEKRSHEKAAQQTNYKRFTPYRTKRPFRAKYAVCSSTSKPAKPCWLCGDM
HWVRECTYRSHKCLDCARYGHREGHCNTASRKKRFNVRQRNINTRVVTVNVRSIRERRRFVSIALNGTAVRLQLDTASDI
SVIDRRTWRKIGSPPLTPSSVTAKTASGATLVLDGEFSCAVSVGSQTRQATLSVCGAANLLLLGADLIDVFSLWSVPMDA
FCNHVTVAGQQSFQQLFPKVFTGTGLCTKASIKFTLRDNVRPVFRPSRPVAYAMEETVSRELDRLEELNVITPVTTAEWA
APVVVVRKANGLVRICGDYSTGLNAALFPHDYPLPVPEDIFARLANCKVFSKIDLSDAFLQVEIDPEYRHFLTINTHRGL
YTYNRLPPGIKIAPTAFQQLMDIMLSGIQGVSVYLDDIIIGGPSEAEHDATVVEVLNRIQNYGFTLRAEKCHFRVNQIKY
LGHIIDSHGLRPDAQKVEAIRKLPEPTNLTEVRSFLGAINYYGRFVPNMRNLRYPLDDLLKAGVEFRWTSECRKAFESFK
TILASDLLLTHYDPKQAIIVSADASSVGLGATISHKYPDGSIRVVQHASRALTAAEKAYSQIDREGLAIIFAIKKFHKMI
FGRKFLLQTDHRPLLRIFGSKKGIPNFTANRLQRFALTLLAYDFEIEYVRTDQFGNADLLSRLIHTHAKPDEDSVIACVT
LEAEVKSLVTSAIQHVPVNFIDISRETIADRLLSKVLQYVQHGWPNNAAYEGELSRFHDRKDSLTAIDGCLLFRERVVIP
KVLQRTCLKQVHLGHPGINRMKAMARSYFYWPSMDHDIVDWVNSCHSCQIAAKSPTHIKSTSWPEAPGPWYRIHVDYAGP
LNGEWYLVIVDSFSKWPEVIPTSSTTTTATISILRNIFARFGNPVTLVSDNGPQFTSTDFESFCRQNGVEHIRTAPYHPQ
SNGLAERFVDTFKCALRKMSADGLTLREALDTFLQTYRATPNAQLNNSKTPAEIMLGRRPRTLLELLLPPRQASQPSAGL
RVRELNPGESIYAKEYRLNDWKWVTATVVDRQGRYMYLVRTAEGKTFRRHINQLRRRISDGSFKDTTRAHSPLPLDLLFD
AWHFNPSPVPASSGQLEADKPSSPPAPVSSCVVPSSNFNIESSRPTLIKCPRRRATSRRTDQTIDSVHEPRRSSRNRRPP
SRFDVYRTF
>Gypsy80_DR_pol#LTR/Gypsy 2207-6923 via tfasty with Gypsy8_DR_pol, 1 frameshift. [Danio rerio]
SAGKLGGPHTVGRDAGPDKIPQSIDNVDLESLYSAVREDTDQNVTVILQNTHKLSMHEDLFYTDVVLENTLTVRGMIDCG
SMACTLSPVALSKLQEAGIVLMMSGGVTKPSDVVLVGCGGLRTQPSSMVDIKMTVCGCTVLVPTLVVDGQIDDLIVGSNV
IKYLISELKQTGNMVEELSFDASNNSDHNKLIQLLSNVERWKGSSVPDKVGTVRLKRSVTLEPLREHLVWAKLTELKNLS
AGSAIIAEPCRARSRPRNVLIGRTVATLWADGWVPVKVINPSTVPITLRRNAKLADIYPCLALEDFEDDLTVDKEVSYSV
GQNVNYAKRHDNSSVNSLSDTNVTEEDCEFGEKLTALGLADIDLGSCQLSTDWKAKLVDLIARYECIFSKHRLDCGKAEG
YVHRIRLSDERPFRLPCRRLPPNQYDKLRQALNEMEDREIIRKSCSEYASPLVIVWKRNGDLRLCTDFRCLNARTIKDAH
PLPHQADALAALGGNVFFSTMDLTSGYYNVEVHEEDRKYTAFTSPFGFYEYNRLPQGLCNSPATFMRMMLRIFGDQNFLS
LLCYLDDVLVFAPNEELGLKRLELVFERLKTHNLKLAPKKCHFMRRSVKFLGHLVSEAGVASDPDKIKVITEMTESDLMD
DRTGAPSQQKIRSFLGMVVYYQQFIEQCSVIARPLFQLTAGPKGHKSKKSKGKIAWKRTLTADDWTDDCRRAFGQLKQAL
IDCVLLAHPDFNRPFLVSVDASSGGLGAVLSQVPENGGVTRPVCFASKSLSFAQSKYPAHRLEFFALKWAICDKFSHWLR
GRPFTVWTDNNPLTYILTKPKLDACEHRWVARLAPYQFSIRYIPGSRNVVADALSREPFVKQSALHRLTRVPYDSLLKEA
SAVQGERVQDVFRWSAHPFVPGTELGIGSTPGMLVVNSQSSVSRLAGECSALEVSAVMEAKRFDSVTPHCDLLLPQLIQQ
IMPTNQTGSMSLSHEELAEMQQTDSVLARVISFVEKGKKPSSRECKQEPIEVRRLLRSWKKFEMRAGVLYRVAREVVCKK
KSFQYVVPKSLVGTVLKGVHDDAGHQGQQRTLYLVRQRFFWHKLERDVRDYVKCCERCVYGKSPEPEARAPLENIVTSEP
LELVCVDFWSAEDSKNKSVDILVVTDHFTKMAHAFPCPNQSAKSVAKQLWNNFFCIYGFPKRIHSDQGANFESMLISELL
SVAGVEKSHTTPYHPMGNGVVERFNRTLGNMIRALPIAAKRRWPSLLKSLTFAYNCTIHETTGYAPFQLMFGRTPRLPVD
VVFGSVLRDSAVTDYDEYVKVLLSDLKHAVTIASETAGKQLKRHTDLYNRKLKGAPVDVGDRVLLANKGERGKRKLSDRW
ESSLYIVIGRNSETNTFKIENSSTGQVKTVHRNLIMPVKFLPLPNDLVEGPESVEECVGTVEARALELLPQPAVDQRTVV
WVSGLESSEGCDEVTNTMEDRMTCQNMTENYDSLSDSVRLVGLGEPVSEDTDRVIDTNSNLFEYVQPLTDSASLSDVVTV
ASVQSNDLYDPGLGLLTSVRSKAGRIIKPVVRLIETMQLQRVDNCVKLPVWV
>Gypsy94_DR_pol#LTR/Gypsy 2041-6572 via tfasty with Gypsy8_DR_pol, 1 frameshift. [Danio rerio]
MDLERQYENACNAVSDGTHVIYTQNIQKIRPFDDLFYTSVIVNDHFHLNGMLDTGSMSCTLSEAAEQKLLSENAVLDKRA
LPENTVLVGVGGRTAQPKCLYEVNMKVYGICCRVPILVVPGQHDDLILGTNLIKHIVSKMKNTDEYWDFISQSPTQLSQE
GEHFLDVMSNITRWRHDEIPHKIGTVKLQRAVTLAARQEHLVWGRLPSKTPLSLGSTILVEPTTSKTMPRNIMVARVITS
MWGDRWVPMKITNLSDLPVTLRKNRRLADVSPCLAVEDFPILQGTGKIQMVNSEIQANTSCTSNSKLNDVGLDEIDIDLC
KVTDASKEKLVQLLIKYNDVFSKHSLDCGEAKEFEHCIRLTDERPFRLPYRRIPPAHYQKLRQALTEMEEQGIIRKSVSE
YASPLVLVWKKDGSLRICTDFRWLNARTLKDAHQLPHQSDCLAALGGNNYFSTMDLTSGFYNLPMREQDKKYTAFVTPMG
LHEYNRMPQGLCNSPASFMRMMLSIFGDMNFSSLLCYLDDLLVFASTEEEALNRLEIVFHRLRMHRLKLSPKKCQFLRDS
VKFLGHIISGSGISVDSAKVDVISKMSKSQLMEEDGCTPSPKRIKSFLGMIFYYQHFIPNCSAIAKPLFALTAGQKRRGK
VRSGKHVGTFRKLNPSDWVDECDVAFSMLKEKLLKCAVLAHPDFSKPLILSIDASLDGLGAVLSQVPAGEEIARPIAFAS
KTLSVSQKKYSAHRLEFLALKWSVCEKFSHWLKGHTFTVWTDNNPLTYIMSKPKLDACEQRWVSKLAPYSFDIKHIAGTK
NVVADTLSRDPFARTVSHRLMNESYNHLLTEADAVKEDGIQDAFRLKVECHKCNDRVECLSRYEQPCDSVVIKLLCQVHD
EWETATFTRAVQLAQSVCQVAAANQISLLGFSHDELQRSQELDSTISKVLRFSNSEKTSRRERDQLDIRALTLIKQWDRL
KIQDGILYRVTKDPVSRQKRHQYVLPQCMKEKALSGLHDLAGHQGQARTIHLARQRFFWPKMDHEIKEYVKCCRRCILAK
TPEPAARAPLESIKTSAPMELVCLDFWSAEDNKQRSVDVLVLTDHFTKLAHAFPCINQTAKQVARKLWDHVFCVYGFPER
IHTDQGTNFESELIAELLALSGVSKSRTTAYHPMGNGITERFNRTLGTMIRSLPLRSKDKWPQQIQTLTFAYNSTVHETT
GYAPFQLMFGRIPRLPVDVMFKQVLNDPVTVDYSNYAAALMSHLSEAAEIAQKHATQEQNKQAEMYNRRIKGVHLHCGDR
VLIANKSERGKRKLADKWEPTVYTIVDSDPKTHIYKVEDDKGLTKVVHRNMLLDISFLPVTLPEETSDESATEECSDDSE
CESLLSNSTDCLEDETSRNKTYSGALNREHSPNSLSVDEPIQQDVDSSDTYHGDSNSGSQIQILSDEASSPCDSNSDSPS
ANSVMSNPDVGDSVIVDVLSSDHEQGKITTRAGRVVKRVNRLIETMAQKPFKMPNLSNSFLKKSQSVLSLF
>Gypsy94_DR_gag#LTR/Gypsy 611-1993 [Danio rerio]
MSQEGEKTDLSASNGFELGFARGRIFGELEHTPLRRAVNFGSPNFCSTRTSDRVHNTEQCVNAESHDNKCSNTDLSNLIT
QLAQQIGQSISDQLKKGSEKNETIDNQPQSIRTSQVLTESPSLNLTGMKLVMKPDVKAPPCFRGDGSDKLTVHEWEELMN
VYLRKKGIPLPEQADEIMSNLTGRAKDIIKITLRSNPLLQPQKDPRVVTDILKQHFSDLTYSSMPLADFYGTLPVPGETA
MEYWIRLNKAVDIADECLRRQGRSIEDPNREVTMMFVKYCPDHSLSAILKFKTADKWTAAEIQERLDEFQAEKRAQMKAQ
SNRSAFMKPVATYAQAPTLDVELSGNEPDVSAGQNVSPLPPSVQSSDSCTQSLINLLDRVLKQNAQTPSVPEDYRHANAR
RMFCKVCRATNHSTVAHCRREGLCLSCFEYGHRKRECPNWSSRHSPDVNYSSQGTGPLNH
>Gypsy66_DR_gag#LTR/Gypsy 122-1549 [Danio rerio]
MGTLRELRREIERQLHLLVGPSNCEALFKVAQCCAEEEGVMIPGMEATEEELYDFIVDFMRREQMHSLEDQGMARLLTLH
DLVRELTTTDQGSASNVNENEETVGLLTSASTSTAVRGQVAQTTGLTSHVTAEQTVPLSRVSEQMTGLIKFSDVASFLPR
REFKIYGGQISDTNSDLSFNSICKQIDEGIAENFTESEIIRTVLKVIRPGTFKEMLITKDSLTVTELKRFLRAHLRDKSS
TELFQELSNAKQQEKESPQQFVYRLMGLKQRVLFASEQTESEFQYDRKLVQGVFLHSLYQGLNEKCTFVRRDIKTVIATQ
TATDDQILELITQSVSEETERQKRIGHTYKSRVTAASVTQQDEVDGKLASLSHAEVKANREAIHELTAQVTALTKSLEKV
MSIRPAVQQQADLAAATAQPPSKSETKGKCKQCIAQNVDVCTHCFLCGQAGHRAVGCLMKSRSPKERRSLGGDHQ
>Gypsy45_AG_pol#LTR/Gypsy 1273-4437 [Anopheles genus]
SQFGRLFISEPFFRVGSQMVKPILPFVKLKTNIGEFPFLIDTGANVSLIDPKLANSCKIGKPYDLCDRNIASASGKFITS
SAIDINFFSPKIDQICTFLLHSFHSFFFGIIGTDILKCLHAVIDLETDNLILKKNSQVLHIPLFSYSSSKTTLNPIFRLE
HLNCNEQAKLKKILDANNSVFHEPKLQLTCSTRVECAINTNDDIPIHQKVYPYPAAYTQEVNNQIKTLLDNGIIRPSHSA
WTAPVWIVPKKIDASGEKKFRMVVDYRKLNQKTIADRYPMPEINYVIDQLKGHQYFTTLDLASGFYQIRMRPCDIEKTAF
SINNGKYEFLRMPFGLKNGPAIFQRVIDDVLRSEIGKTCYVYMDDVIVFGKSFEEHLNNLNNILQLLSNANLKVQIDKSE
FLHDKIEFLGYIITSEGIKPNYKKIEAISRYPEPSNIKELRGFLGMMGYYRRFIKDFARIAKPLTNLLRGDENKASKKKI
DLSIAEKACFQKLKSIISSEDILIYPDYSKPFLLTTDASDIAIGAVLSQGQIGKDRPIHFASRSLSKTEEKYSVPEKEML
AIFWALKIFRNYLYGTKFTVLTDHQPLTFALSAKNTNAKLKRWKSYLEEHDFEIAYKPGNTNVVADALSRNVCSLTGTQH
SAETSDDFFIISTETPLNAFKHQVIIKNGCDNVQRRQIFSSHNRITISLNDTNEISLLQVLKKYFDPSKINGLFTSEAIM
GKIQEVYRKYFGNTNLLKIRYTQKLVRDIEDEEEQWQIAKTEHVRAHRCAEENTQQILRNFYFPKIRAKSKQIAKECQTC
HENKYNRKPIDYPIQKTPIPSNPFEIAHIDILFLENNYFLTYIDKFSKFAQIKLIESRATIDILPAVKELTTKFFPPKTL
VMDGEKSFCSRELELFYKAYNIETYVTATGRSEMNGIIERFHSTLLEIYRITKKENPTFCTPDLVELSVQKYNSSIHSVT
KHTPIEVILPSVRSSEIINNVHKNLIQKQSQDLIFHNKNKKSVPIDINNDTYEKTRARLKHKPRYKKKNIMNINNSTVLL
EGNRKVHKNDLKIR
>Gypsy44_DR#LTR/Gypsy 198-4991 [Danio rerio]
MEFDLIEFSLAPTVEVFNRCRKKDLLLIAEFFKISVSRDVTKAVLKDELYTELVNSGILPVESKTDGLEEQELVEIAETN
VDAVPIGIEPIMDPLLEIKLKELELAIKQQEHETELVHLRVIEVQADRDIKLKTLSLEAEALRYKPVSAPSSRPSSPLTA
LPAQSSTVNLNKPVSAPSSRPSSPLTAVPAQSSTVNFGSPNDARVNFDVAKYIKLVPPFREAEVDAYFTAFERIAEKLGW
PKDMWGLLLQCNFVGKAQEVCAALPIDQSLDYDVVKAAVLRAYELVPEAYRQRFRGTTKTAKHTFVEFAREKRTLFEKWC
LASKVNSLDQLQELILLEEFKNCLPENIVIHLNEQKINSLSEAAVLADEFALTHRSVFSSTRQFRHRGFANEQVKAISPV
LSSEKSEKVKPMLDNSSRKRVCFYCLDSSHLISDCKAWKQKSASTKSKSVAFAQAGSVSDPSFQPLQDSGYKPFLITGSV
SLSADSPGQTVSILRDTGAAQSFILAGVLPFSDKTYTGTDVLVRGIELSCIKVPLHTVFLKSDLVTGQAQIAVRSELPVE
GVSIILGNDLAGGKVFPCPIVLDKPEVTVQPDVVAAHFPAVFPACAVTRAQSRKLDDVVNLSDSFMNPVSGMSECTLFIN
PEISSPCERSDSDSAATLLKVGKEDLAAAQKADPSLSLSLDASVSFEKAKNLSGPVTYYWEDGILMRRWKPQVNGDVLAV
HQVVLPSAYRPQVLKLAHEHPLAGHLGITKTYKRILKYFFWPGLKNSVVSYCRACHDCQLSGKPNQTVPTAPLQPIPVIN
EPFERLILDCVGPLPKSKSGHQYILTLMCAATRFPEAFPLRSLRASVIVKEIIKFCSTFGLPKVIQTDQGSNFTSKLFAQ
VLKELGVSHQMSSAYHPESQGALERFHQTLKTMLRTFCVSTGKDWVEGLPLLLFAVRETVQESLGFSPSELVFGHTVRGP
LKLLQEQLLSKETSAVNLLDYVSNFRERLHSACDIAKAHIVCVQSKMKSRFDKKSVKRSFQPGDQVLVLLPVPSSALHAR
FAGPYCIEKKLSETNYVISTPDRRRKSRVCHINMLKSYVSENKTQDSAANEVEAARPVEVKTVVLSSIVDGSDEDEVIPA
HFQNSTILSQLDNYLAYLPEDQKQSLAQLFNKYPMLFSDVPGRTSMITHDIDVGNSPPIKQHPYRVNPHKREIMKQEVEY
LLQHGLATPSQSPWSSPCLLVPKQDSTFRFCTDYRKVNSVTKPDSFPLPRMEDCVDRIGSAHFITKLDLLKGYYQVPLSH
RASEISAFVTPDNLLQYSVMAFGMRNAPATFQRLMQKVLSGIPNCEAYLDDVVVYTHSWEEHLSILDEVFKQLTRASLTL
NLKKCEFAKAVVTYLGKKVGQGQVKPVEAKVEAILKFPIPCNKRELRRFLGMVGYYRSFCQNFATIVTPLTDLLSTARKF
VWSPECDSAFKAAKDLLSSAPVLSAPCFDLPFLLQVDASSSGAGAVLLQDVNGVEHPVSFFSKKFTSAQQKYSTIEKEAL
ALVLALQHFEVYLGGSSCVTVYTDHNPLVFLHRMRNSNQRLMRWSLIIQEFNLTIQYRKGSENVVADALSRISHAVE
>Gypsy47_AG_gag#LTR/Gypsy 640-1929 [Anopheles genus]
MSQQEVVDRILSRLAALEAQQQSIPGVIDYSDPPLHFTKTDGTAVSPESFDKIPDLVKDLPVFSGEPSELNSWIDDVDGI
VKLYQTNSTNTVEQQNRFHMVCKFIRRKIRGEANDSLVASNVGINWNLIKKTLITYYGEKRDLETLDFQIMSVQQKGRSL
EVYYDEVNRLLSLIANQIHTDDRFSHPEASKALIETYNRKAIDSFIRGLDGDVYKFIRNYEPTSLAAAYSYCISFQNIEC
RKMLTTPKSYIPPSAPRNLIPIVPRIPTKPNMYRPPTTPNHPNSPIYYRPPTYLTPQNRPNQNFYNPHLRIRPPVIPQRN
PFKPPVAQNPPQPEPMEVDSSIRSKQVNYGNRPNFSGTYKPPLKRTRAFNIETNTGNEQVEYEEEMAKTLEECDDDVLSA
HDRYLACINRQDGSETSENGEEAELNFLE
>Gypsy55_DR#LTR/Gypsy 114-4172 [Danio rerio]
MADCFRRPDPLSFEGNVADNWRIFEQEYDIFIAAAHHDKPAKTRAYILLNLAGPEAIERERSFVYAAEVRAPGENGAVLT
PAESKEDPECLKRKFREICNPQQNKTLERHKFHSRNQKQGETIESFISDLRIKAKACQFGDLTDELICDRIVCGIKSEGL
RKALLRDSDLTLIKAISICRIYEMTEESNKTLAMPQTATNVDAVRPVSTRRRQYTGRKPQTEQNDSLIINNCKNCGNSHL
AKKEKCPAFGQLCHNCKKMNHFKKCCRQRCQYVQKKANYKKAVQELEIEKPPAFDDTFYVDGVEFDKCVDTVNSFMAEQE
EGFVTLHINKTPIEVKVDTGAKCNVMSQTTFKRIATNIQPVEQENTPNLVAYGGSKIETKGLVTLQCNLKGQRHSLPFFL
VDQDVQPLLGFRACLDLGIVTMSPHVHLVSMEKSTEQVLEEYKDLFTDELGELPITYSMTIDPSVQPVVRPAHRIPLAMQ
DRVKAELDRMETLGVITPVSEPTDWVSSMVVTHKKDKQEIRLCINPKDLNTALKRPHHPMRSVEEVASQMSGATVFSVLD
AKNSFWQIRLDRKSSMLTTFSTPFGRYRFLRMPFGINSASEVFQRSMEQLFSGYPCSIIVDDIIIGGRDAAEHDANLKRV
LNRARNVKLKLNPAKCKFRLDRVSYVGHVFTSEGLKADPSKTKAIFEMPAPKNVPALQRFLGMANYLGKFIPNLSDVAAP
LRKLTHKDTAWCWYHQHQEAFDTLKSCLTTPPVLSYYDVKKPVTLTCDASCFGLGAACMQDGRPVAYASRTLTDTETRYA
QIEKELLAVVFACTKFRDYVYGKSVVVETDHQPLVTILKKPIHTAPARLQRMMLRLQCFDITLVYKKGKHMYLADTLSRA
PNTKVPPDAESDTFEVMSVSYISTARLEELQKETAEDKVLQTLSTVIQQGWQNKKHTLSPDLHPYFPYRDELVVENGIVM
KGHKTVIPRSLQKEYIKIVHRGHPGLDATKRRARSIIFWPTMTADITAELITCSVCNSTKPHQQKEPLKPYPVPDLPWST
VATDMFEWRGQNYMVLVDSYSGWYEIDLLRDTTSSAVIRKLKRHFSVHGTPHTLISDNARQYTSQQFRDFAKQWDFVHVT
SSPEYPQSNGLAERAVRSAKQLMEKSHRDGTDVFLNLLNLRNTPRDETLGSSAQRLLSRQTRSAIPVNSKLLEPAPKQAE
QVAAQLFKKRMAQKRYYDISSSPLQPLAEGQVVRMQTPKGYDRLGTVKEVNKEPRSYTIQYNGKTYRRNRRHILPVAEPA
PSRFDPDDSDIHKTITHTQDSVPPEPQTHFPQTKSTGTDLPKHTVLSPTKVGSTPYRTRSGRISKPNPKYNQ
>Gypsy52_AG_gag#LTR/Gypsy 922-1905 [Anopheles genus]
MQRSPQQGAAPVASPAVAISPAVAASPAVVASPAAGLPTPSPYLIDITPLARDASTDLPEFQVETVNAMRLKPPELDTAD
IHTFFYALENWFDAWNISPHHHVRRFNILKTQIPTRIPPELRPILDSVPSTDRYESAKKAIIQHFEESQRSRLHRLLSEM
SLGDRKPSQLLAEMRRTANGAMTDSMLIDLWIGRLPPYVQSAVIASSQNADEKVKVADSVVDSFALYNRSGPYQTIAEVR
NEEVNRLSRQVAELSQRLETLMNQNQARERSRARSRSRNRNTNQATNPNTNGYCFYHDRYGQQARNCRAPCSFNSRPQNN
GTPTTSA
>Gypsy116_DR#LTR/Gypsy 2084-6746 via tfasty with Gypsy8_DR_pol, 1 frameshift. [Danio rerio]
VPYCWSFQTRLYKEIRYYTLFFRFTWRSGKLKHPHSERGSVGVAENSLEVDTDFEALFLSFKNLCPDSQKVVFQNTQRIA
CSDTLFYTPVLINDSLTVSAMLDTGSMACTLSDSVVTKLREHGVLDTVTEKETDVIIIGCGGKRVFPKSVVELKLDVYGC
DVIVPCLVVPGQDDELILGTNVIKYLVHRLKGSDRYWELISTPSGPSSEGDEFLSMLAGIRRWRGETVPDVVGTVKLHSA
VTLSPGQEHLVWGKLPAKSCGQVGSTVMVEPSRVHSASKKVLVGRVVSPLWGDGWIPLKLINPSDKPVTLRRNTKVADVY
PCIALEDVCEAASESTVRLCVQQSAVEPDRSDAPSSRLQKCGLESVDLDACEVSDFWKAKLCDLVLEYESIFSRHSLDCG
EVRDFVHRIRLVDERPFRLPFRRVPPSQYQKLRVALNEMEERGIIRKSVSEFASPLVLCWKKNGDLRICTDFRWLNARTV
KDAHPLPHQEDCLAALGGNSFFSTMDLTSGFYNVPLHEDDKKYTAFTTPVGLHEYNRLPQGLCNSPASFMRMMTKIFGDQ
NFLSLLCYLDDLMVFAPSEEVALQRLEMVFGMLKKHNLKLSPKKCNFLRRSVKFLGHLITEEGVSTDPSKVEAIANITSA
DLMCPDGATPSVKRIQSFLGLVMWYQRFIENCSSLARPLFALTSGVRKARGVGRRGVSITRKLTPDDWSPACEAALSALK
EALLSNVVLAHPDFSRPFILATDASTEGLGAVLSQLSPGENRARPIAFVSRSLSRAQARYPAHRLEFLALKWAVCDKFSH
WLKGHRFTAWTDNNPLTHILTKPRLDACEQRWVAKLAAFEFDIKYVPGSKNTIADTLSRQPFVDSRVSHRIVREPYEKLI
AESRNHTCATVQDLFRLSNACQRVVGSAEVSADACDRMGVAPDVDGPGSFSNAEVAAVFSNHLSWDNATRMRTIPLVGFV
QQITDVGFDALPSYSHQELRDSQLQDEHLQRVMFYVDQKRRPSRRVRMGEPSAVRKLLKQWDKLSLADGVLYRVSKDPLT
HHKRFQFVVPPSLKDEVLRGCHNEAGHQGQYRSLHLCRQRFYWTGIEQDVREYVKVCSRCVLAKTPEPEGRALLESVKTS
APLELVCIDFWTAEDSRNKSVDVLVVTDHFTKLAHAFCCSNQSARSVAKKLWDNYFCYYGFPERVHSDQGANFCSELIRH
LLEFSGVKKSQTTPYHPMGNGTPERFNRTLGNMIRTLEPRPKHDWPQMLHTLTFLYNCTSHETTGFPPFYLMFGRVPRLP
IDVIFKSVLRDDLNVALPKYVESLSRDLKDALAVAKTNASKEQSHQARVYNRRNKGVNIEVGDRVLLANKSERGKRKLSD
KWDSVVYTVVDCDPKTHIYKIKHPVSDQVKVVHRNLLLCVNFLPVCDAVGTNDDGSVISVDDGVSDGCSVSSDDSMDNGD
GLVVADNVSQMNELCDISNSAEIVDVPSHNAGSENTSMDSMILQDGPETSNACDPDFVPNGNVDSTELPGRRSRFGRLLK
PVNRLISSMSQQTLFSSRKQSLGKWSFSIVSLKH
>Gypsy-1_RO_pol#LTR/Gypsy 1637-6104 via tfasty with Gypsy12_AG_pol, 1 frameshift and 6 stopcodons. [Rhizopus oryzae]
MQATRTEAMDTDLPIQRKVTEKSNKPRTRRIEPDIKYDIISDVLKQKADIEIGDLITVAPSLRKKLVDECRPKRKSRQSQ
QVAQQTMALIEDEEINTTAAYSTVSIGDKNIKALVDSGASKTCMSKALADALELEIDSASENVFTLGNGTKQPALGLIYD
VPIEVKEDMVIPCTIEVLPSCPSHLILGSNWLNRAKAKIDFNSSSLKVKYKNQKAELPIHFIRKSTPLPKMKTFHQDYQH
PISLTNSNSEKHVHFEDRDSEGSYSSSEEEDESESESDDDIEMEVTALERNYEQESLQVLENDKYEEVVITNSQEMYSIK
STDTGFLMQAHSSKHISLDKPKEDTQNILYDFYITHPKLMQSSGYFDRSSSFIVNKKSLDICLYNRTEKDIYLKPGEEIG
ILEILDPNKDTIINAYEMDKHSTLCTLEHDNIKQNPNKQEQDTLKPQLLEKLEIGDINESMREELLKLLKRYQHIFDWDN
DTIGRTNLINHKIIIEENTLPISHRPYRISPLEAEHLQKELDKYCKLGVISPSNSPWAAPVILVKKKNGDYRMVIDYRKL
NAKTKKDAYPLPRIDDLLDTLGKAKVFSALDMRSGFHQVPLDENSKEFTAFTTKYGTYHYNTLPMGLVNSPATFQRLIDL
CFRPLINKCLVAYIDDLNVYSHNEQEHIIHLEQVFQCIENANLKLNPEKCFFFKDHLKFLGYIVTNQGIQTDPDKIKKIV
EYPIPTTITQVRSFLGIASYYRRFIKNFAAIARPLHDQTKTKKKIPWTQATTASFETLKKLLTTAPVLARPDFNRSFILV
TDASKLGLGCVLTQLDDDGKEHPIIYASRGLKPNESNYAPTKLECLAVIWAVKLFRPYLLGKKFMIITDHSALTGLLKTP
NPTGIIARWIVTLSEYDFDIKYRPGRVNESADFLSRLGHxITYNTTLEFTTLIYTSIxLSTTWRKGGxMIHKLKKNPKTT
QSTHKKESYYQLHGGWEGKLKQNVQNHQKQxKNTKIIREGRTAxKTNNREKKNLNNTIIGNNIHKIKTLKQxYIKNLILP
KMEQQQIDLVKQYLQELRLPEDITHKQKRYLQKQAHKFTIYKDKLYRYNTDNGIIRKVLNKQEAEEIMYSYHQHPLGGHL
AYNNTLHKIASRYYWENMTKDIMEYVKKCHRCQRHGKKSLKEELYPVPVSVKPFDRIALDVKHVQASRSGNRYIIAGIDY
LTKYVEARPIRFQTASEIALFLYEEIICRHGCPTIIVSDNGKPFVSKLIQQVCKNFSIIHKTTTPYNPQSNGLIERFNRT
LGQILQKRTKEEKDDWDSYLPAALFAYRTIKQGSTKNTPFFLLYGYEPKTPFDIDHHVYERNSPKFEAILRHRTIHQIYN
LNRIRDAGVQNIQRAQESQKKQIENKILDERKELKPPFKLGDIVLIYRDYLSTSWSAKLQDKWEGPYVIQHILGKGTYHI
KSMDPHDIKLRRIHGNRMKPYLLPKVQWCQENERSIMTNLDEQTNDLLH
>Gypsy-1_LG_env#LTR/Gypsy 5204-7342 Related to envs of Roo (Bel/Pao element), and the Gypsy element TV1. [Lottia gigantea]
MVHYFSERMRCIWLLLLPVYGITAATKVSQNVLFRPVHQVSTSRSKWRLTLVHDITPFMKFTSDLATDIGRTLLTVDEIM
TNYSAGNNSLEYENTFSKLKIEVITLRDEIEDLLDGVQDYRALSMKHARPRRALIPFVGKALSWLFGTVSTDDLNVIRSN
IDKLANNQQAIQHVVAESLSILNVSRLHISENRQQVNLLSDSLRNLDIKIKNVVRQFKKKLVSLEGFLHLYLRMKLVLDD
LKNMYLRAEMYASEIKLQLNMLSLGHLSPSVLTPGSLRRLLIEIQSHLPPSVRLPANPKKNLWHYYRILNCVTIIENNKI
IVVLNIPLLDSDRVFEIYKIHNLPLPMTNKLILSKSKATFKMVASYRLEAEVIAVNTDRTKYAILDSDEFTKCSDPLAGF
CQITSPIYPINLSQLCIVALFTENREKIRQLCKVFIKPNCILPVATYLANGMWMVVTHRPIRFSIVCHQTSFVHQSVVIR
PPIQSITLPQSCKAQNDFLELPAHFSNESSYMDSTSFPNVTAIFEKTIQDLWQPYITKFENYSLTKLPPKLEHITDIPMK
ELTYEIENLQKLEHEATEKWPLWKIAAISIAVITGILILFVFIKYCLVGRMGHRFLSVLRTRTAHGRGNKRSSDVELRTI
PSAPNDEPTSRPDPTVPLLPNNMYPPIPRPRDDTPPPSDESSLPVPKGRMTLDYLLKLAQARNAAKAQESTM
>Gypsy-2_DPer#LTR/Gypsy 68-4099  [Drosophila persimilis]
MNSNMTKNEAPTFYQMATIAEFSPHQETFCIWKEKFDIHLCELNVKEENTKKAVLLKSIGTAAYTVLHSLCDPVSPVSKA
YKELCEILKTHYTPPTLIFRERKQFHMSTKSEDETVAEWYARVKQLALECKFGSNLEAFVLNQFVMSLPNPIYERICEED
ENLTLADALKKAMIMETKISTRKTEHNVNYMHQKNGTSQWQRQRGENRDQAKSNGRSHFKGNRNVSYRGGRSDGDGDGET
DCDAGREKKQQPCTHCGWRNHNSNNCKYKACKCHSCGKIGHLASICKNKSKKSVNYVSQTKHSDNNFDNDNYNFSIYSVD
TTSTSGVYYLPVKIDGNITKIACDTGAPCTLVPKTFYESLNTSRPLRKCLVPYVDYNGDSIKVIGEYDATIEYRGLKKQI
VVVVTNAVSPPLLGRTFLRAFNFELMQVNNVYVNEPNSVITEQIKSEFAEVFEPRLGSYTTNTISLLLKEDAKPIFFKPR
SVPLAWKEKIEVQLRKFIDDGILEQVVSSEWATPLVPILKPNGDIRICGDYKVTLNRSLVDVKYPLPRIDDIFAALEGGT
LYSKLDLSNAYNQLNLDEQSQNLCTWSTHIGLLKVKRLPFGIKTAAAIFQKTMEGLFQGMRGVVVYQDDITVTGRDLQEH
ISNLKAVLRKLKSVGLKLNDKKCEFFKSKICYLGFSIDRIGLSKNNDRVASVLFAPAPENVSQLRAFIGMVNYYSKFINN
FAQIMSPLYALLKKNTKFNWTRECQSAYEEVKKEVTSEQVLVHYNPDQPLVLTTDASSHAVSGVLSHKCNEDIKPIAFVS
RALSKSEHNYSTIEKEALAIVFCVSKLRQYLLGNKFILRTDHKPLLSIFEDLKGLPLMASARMQRWALTLSGFQYTVEHI
KGTLNIADGLSRMPQWETAVPNEDYNYIHFIQSEKVFKISFKEIARETRRDPILSKVCEAINTGSKTRLNGSEFSAYISK
TNELSVEYDCILWGHRVVIPTKLRQAILAEFHASHLGIVKTKMLARSYVWWPCIDSEIEKLIRDCIPCQELQSSPEKSLL
IPWKSTGKAWSRVHIDFAGPIRGFHLLVIIDSYTKWAEVFKTKEITSLFTINKLREVFCRYGLPDVLVSDNGRQFTSDDF
KTFMKNNGVNHIFTAPGHPATNGQAENFVKTVKKSLYANIKANERQDFNTILNRFLIDYRNTIHCTTGESPAKLFFGRTL
RTRFSLLKPPTVESIINKKQTECVVNHKGRRSTEFFKGQKVMVRDYKNPNKASWTQATVKQQLGPRSYCCILANNNREIK
RHLDQIRNQSTNNHTSPNAKTPDVESNCSVDDNSKTNNEQIVSQPTPTRRELRPREAGKVVKRI
>Gypsy-3_DSim#LTR/Gypsy 957-4900 via tfasty with Gypsy3_Dmoj, 1 frameshift. [Drosophila ] [Drosophila simulans]
MAESVIRPFLCETIEKSLLRVEWEKWLRAFEIYVQAEEIISSPSRKRNKLLHLGGPQLQTVAFSLPGAVITETAAGDQTD
VFQTLVDKLNAFFSPKQNSSFERHLFRKPFSFLSPAEGETFAKFVLRLRYQIQKCDFGSTKAEIEEICLKDKIIDSCANI
SLKRKLLEKEYNLSEIINLCQMEEEINKESEIMRPQLNPEGINRIQTDTKSSNMQWECSRCGRKGHNHNSPNCPALKQQC
NKCTRFGHFANKCRTNLKRPGNQNNSNATKRQRSNVNLVNEGDDKKPANNCFKILSDDEDEAIKCQVGGQEMPFIIDSGS
RFNLISPEDWSVLQDKKATIFNVQWDCSNHFRAYASDELLQVICCFDAPVSVGSNPEVIAPFFVIKKGKQSLLGKETAIK
LQVLRLGLGVHSIESVSPFPKWKGLPVKLSIDPDIKPVQQPMRRIPIALEEKVIGKLEEALALDIIEPVMGHSQWISPMV
MTFKENGDLRICIDMRLANKAILRENYPLPIFETFMTKLRGAKYFSRLDLKYAYHQLELDEASRAITTFITPRGLFRYKR
LMFGVNSAPEIFQRRLEELLAPCRNVLNYIDDIIIFGTNENDHDNAVKEIKDILEKNNVLLNAEKCIWKTDKVKFLGHIL
SDRGIEVDPEKVSTILSFRSPKNKEEVRSFLGLVTYVGKFIPDLADRTEPLRRLLRKDCRFNWDKNEEKAYEDLKSHLAK
IPNLSYFDPDNTTQLIADASPVALGAVLLQFTRDKELKIISFASRSLSDVEKRYSQTEKESLALVWAVEKFYFYLAGLEF
ELVTDHKPLEAIFKPTSKPPARIERWLLRIQAFKFKVIYKAGKENISDALSRLCELAATNSSWRNDEYNVFRVIEYSVPA
ALHISEISQANSMDEEIIDAMSCLETDTWDPCTSNKFYPFRYELSTLGKILLRGTRLVIPATLRKRVLELAHEGHPGESA
MKRRLRSKVWWPRIDRDAENFVKACRDCLVVSQPLGPAPMQRTPFPTSAWMSIASDLLGPLPNGKYVLVFIDYFSRYMEL
KFMQSISSTAIIGAMKEIFCRLGFPKYLRTDNGRQYVSEMFENYCSLNGITLIRTPPYWPQANGEVENINKSLVKRLKIA
HLNKKNLEQEIQEFLLMHNVTPHGTTGTAPSELMFNRLIRDKIPNIQDVVGAFTDSAEKDNDQIQKHKGKVAGDKKRGAK
DVDIQVGDQVLMKNVIFPSKLTPNFDITEYQVLEREGNIVKVSGGGKTLLRDVSHLKKIPAASTTMTVPASTTNLEKHNQ
HSLAKSSEENDTSAGPGLKLKLKNIGGMWEPVREE
>Gypsy-2_LG_pol#LTR/Gypsy 918-4838 [Lottia gigantea]
CKQSTGKLGNSSCNSADKKSNKNGNHSESNNQSFQINLAGNPSSCVIKLEKQTFRSLVDTGAEVSLMHSRVYKNLKFKPK
LKKEKITLFSVNNKQIDMEGSAIFDFRLGGKKVSHKFYVVSSMNRNIILGRDFLVEKKIRLYFDLKSLRYEGTYIPLEED
IHISSLLRLSAELIVKPQTYNIGMARLKGDNQTTGTLLVKSYDKGFIGGQPGLMVVNSIVPVNNDNEVNARVPIAIVNES
NKTIRLKRECIVGIAQTIENGQICSIESTKTREHNPNNDDLFKDLDCDHRHKDRLSKFLTLHRDIFPSSDTELGQTDTVE
MTIDVGSNDPIKLRPYRTPLNKRDTVGKAIDDMLDAGIIRRSCSPYSFPVVIVDKKDGSKRFCVDYRALNKIIKVNSYPL
PLIDDVLALLNSAKMFSTLDLRAGFWQIKVNEADKEKTAFVCHKGLYEFNVMPFGISNSPGIFQQLMSIVLDGLDKFAVA
YLDDILIFSKSPEEHLKHLEIVFNRLREHNLRLKLKKCTFMKEETKYLGFKITTEGLMADPDKVLAIRGMSAPTSVKEVR
SFIGAMSYYRRIIPNMSKIAEPLIDLTKKYAKFNWTDKCQKAFDYLKDSLTTVPMLGYPNADLPYVLYTDASDTCIGACL
TQVVDGIVSHRLGKTQCKWAVCEKEAYAISYSLQKLDYYLHNAQFVIRTDHKPLKYLLESPMQNKKLQLWALNISGYNCK
IEYIPGETNTVADMLSRIPSDSTDIRQEDNSDDEPEISNNTFEINVINSNKFNPGDYDDCDDNVSTKPTNTVEINDGLTN
IDMVVEQTKDEDIELVKQRLTQNQNQSSTNNKYIIMEDLLYFISDPDGEPQTRLYIPKQLKKEVIKQYHDLNSHPGIDKT
YATIKVKNFWPKMYKELYEYVDTCVTCQTRSTMKNKPDTIETGIPPYPMAKLSLDLSGPYPTTLSGNKYIISFVCWYSGW
VESFPVKDKTAENVAHLIIEEIFPRFGCPLAIVTDNGTENENRIVKETLDKLNIKHILTSYYSPKSNARVERNHRTLHDM
LAKRVSSNHSTWDIFLNQCLGAIRFNVSKTTKQSPFSLLYSRDPVLPLDNILKPRTKYYGEDHHLLALENQHKSFIQVHR
YVKKIKSKQSEYLNKNTKNVKYKIGDPVFYKNNRRSNKLDNRWTPYYRIVEQKGPVSFIIRNQLTGQTTKTHADKLRLAN
IDQWDIPTNDSKVRKSKYVVPPSDTSDSDQSEHVDFSDSDSPDDDKPLARLVDKYRRERDNSSSEEDDIPLFELTQRLQQ
KARENEMNETDDEESSSCDMSDADIN
>Gypsy-1_FR_gag#LTR/Gypsy 23-775 [Takifugu rubripes]
MFEAADDGISSSAMSPRHAQPASVIASVKLPDFWQSDPAPWFQHVEALFHLRGVTEDDSKYYLVVAALDQQSTRRVMQLL
RDPPPRGKYAAIKELLLRRYSQSAAERADKLLSLPGLGDGSAVDLMDSMLSLLGSDEGGFLFPHIFLRQLPHPVRAALAN
SPSLAAGDFRGLAEEADRVLLTARRTSVQSVLADSRLLVPEDTDQAMVAGVSSRRRKSDLCFFHQRFGHKARRCVPPCAF
ETQGNARASAQ
>Gypsy121_DR#LTR/Gypsy 564-4836 via tfasty with Gypsy37_DR, 1 frameshift. [Danio rerio]
MASVVETFVQTPSEDLLDLMTKDQLLELATHYEIELSALQKRTKEGIKQILKASLFDLNVLVEAPAPIQPGFGALSFEQQ
KELLMLQRDTECEKRRLDCEKAKIEQRVEESQIYENVKSSVLKIYERVPESYRQQFRSLGRESNQTHVEFVRDLTLRFNR
WRMSAEVTTLDDLINLVLLEQFKNTLPDIVVTYIAERNVKTASQAAVLADEWELIHKTRADGFRSDRLSPCLSSPSVYLN
QARRPKSPSNRHDLTCNYCLEEGHWKSNCPVLKSKSAKAQLTKSAGFVKPAALVGPVPLSALSAETPANTSSVLDRQDIF
NPFISDGFVSLKSGNRIAVKILRDTGSSASFILESILPFSLESDTGKSLLIRGIGLNTLSVPLHKVTLNCDLVQGDVELG
VRPVLPVEGVSLILGNNLAGGRVWVGETPPLIVSNPPPYCDCLDESAPQNPDVFVACAVTRSASRAQSEVKPVSTEHFFP
LTDYPLAVSREELSKEQQSDVTLKAQYEQVYDDVDIRNRAQGYFIRDGVLLRKWSPHAGFCVGDPFVQVVVPVKWRPVVL
KTAHDGLAGHAGIKKTYDRILRYFYWPRIKKDVASYVKTCHTCQLTGKPNQSLKPAPLQPISAVCQPFEHLIIDCVGPLP
RSKAGSEYLLTVMCQVTRYPAAFPLRSINTKAIVKALTQFISIFGLPKVIQSDQGSNFTSNLFAEVLRHLGIKHNLSTAY
HAQSQGALERFHSTLKSLLRAYCVEMDRDWEEGLPWLMLSAREVTQQSLGYSPNELVFAHKVRGVLAVLHDQWTDLDPPE
KLSDYVLGFRRRLSLAWELAKKQLGSSQKKMKRLFDRRTERRQFSVGDQVVALLPVLGSPFQAKYTGPYKVTHIGSNDNY
TILTPDRKKKTQVCHVNILKPYFNRDCVTPMQVNPVALVDSFPEHYAHHVMDMQADELKTPDDCVLQGRLKNSETFKKLL
FDFKHLDATQQQELIQLLSEFPQLFSDVPTQTSVLTHDIDVGEATPIRQRFYRVPLNKRDVLRAEVQYLLDNKLAEPSSS
CWSSPCLLVRKSDDSFRFCTDYRKLNSVTKPDSFPLPRMEDCIDQVGAAKFVTKLDLLKGYWQVYLSERARELSSFITPD
GLFSYRVMSFGLRNAPATFQRLMNKIVAGLEGVTVYLDDTIVVSDSWPEHLCRLRRLLDRLSQANLTINLAKCEFAGATV
TYLGKVVGQGQVRPVRAKVQAIDEYPVPVTKKELMRFLGLVGFYRCFCRNFSTVIAPLTDLLKSKALFVWSESCQTAFDA
VKALLTSAPVLMAPRLGEPFKIMVDASKEGAGAVLVQEDDVGIERPVCFFSRKFNSYQRNYSTIEKEALALIWALQHFEV
YVGGDSSPLTIYSDHNPLTFLHSLKNPNQRLMRWCLFLQPFHLDIRHLKGSENIVADALSRAPL
>Gypsy120_DR#LTR/Gypsy 84-4522 [Danio rerio]
MSRQQKKGPMKPVSVEQEEEQGRPAEEEMEHKDKDEMASREPTLADLTSLFSAHMAKMDSREAVRKQEHIDQERRFKALQ
HQFSLLQMEVQARTSPTSDACHIDTHSLDVHGAQADTDNQQFTSPNVFHSNADLIDDRFPPPRFREPRLEKLADSDDIEH
FLITFERIATACRWPKADWAFHLIPLLTSRARAAYVQMDLDDSTEYDKVKAAILVKYDINAETYRLRFRSLTVLPSEAPK
ELYTRLKDLYGKWIKPKGKTTEEVGEIIILEQYLRMLSPELQVWIRERDPTTAAEAAALADVFVAARGKNQSWGRKTSSE
ARRPPFPQFQPKSMAGLGKTPKGGSPEMKPAMTLRRPVVCYLCGQEGHTKPVCPRNVVKPTNLCYVPRGWEDKAQKPNSL
LHAITVKVNGKEFPALIDTGSDQTLVSRKVVAPSSVNASNKLSICCVHGDERLVPTADLYLAVNNQPYLLEVGVVDNLPY
PVVLGRDLPVLLDLIQPMSQCNMVLTRAKAKQQDEPAQTLSMLPFYNADLETSPPKPKTTRRQRRHAKLQYNASRLPAGE
VDGLNPQMKLPTNISELQQNDTSLVAYFEQANQMEMGDKVIDDNCERFMISENILYRQIGSVKQLIVPKEARELVLHLSH
SIPWAGHLGVRKTIERIKKYFYWPGLKADVVQYCKSCPECQLVSLHHPPRVPLQPLPLISTPFERLGMDIVGPVEKSSLG
NRFLLVITDYATRYPEVFPLKSMKAKNVATCLIQFCSRVGLPREILTDQGTNFMSTLLKQVYQLLGIKSLRTTPYHPQTD
GLTERFNQTLKQMLRKFVDETGKNWDQWLPYILFAYREVPQASTGFSPFELLYGHEVRGPLTLLKEMWEGIKGDREPSNV
VAYVLQMRERLEKMRALARTHMAEAQKRQRTWYDQRAREREFVSGEKVLVMLPSKENKLLAKWQGPFNIKSRLGPTTYEV
ATPGQEHASRILHVNLLKKWVPRSEQVLLVCRVQGDEECEDQYLPQPTSADIRLDHLPEKQRRQVSPLCNPQIFSELPGH
TSLIQHDVILKPDVAVRRMSYRIPEKLQEALKEEVDFMLSLGIIEPSQSEWCHPVVLVPKKDGNIRFCIDFRYLNSVSQF
DCYPTPRIDSLIDRLGKAVYLTTLDLSKGYWQIPLTERARPLTAFRTPWGLFQFRFLPFGLHGAPATFQRLMDQVLQGLT
FAAAYLDDIIIYSTTWEEHMQHLHEVFQRLQRAGLTANPAKCAIARKEAEYLGFVIGNGVVRPQIKKIQALEECPLPQTR
KELRSFLGMAGFYNRFIPNFSSRAATLTDMVGVRCPNQCQWTEERMAAFKDIQTALTTNTVLYNPDFTKEFIVQTDASER
GLGAVLLQGSPGERRPVVFISRKLFPRETRYSTIEKECLAVKWALDSLRYYLLGREFILETDHKALQWLERMRDTNGRIT
RWYLAMQPFRFKVHHVPGKANVTADYLSRCASETPEGRG
>Gypsy-1_ACa_pol#LTR/Gypsy 1128-4925 [Ajellomyces capsulatus]
GEVPVRCLVDSEADANFISYSFSLMKGWKKIGPPGHAKFTDGTKCHRFGIIQTKCEATDSEGTSKGSSLLLHAVNIIDED
VILGLPWLRENNPLIDWVTQAWRYRLTDEEAAIEEPEEFHRKNLEDKIESIYCVAGDLDLEAGGEAATLTARLAVMSATE
GGRTQRLFTDYKDVFSEKEAAKFPDTKVRHKIHLEEGATAPYGPLYNLSVKELDVLRKYLEEAQSKNWIRPSKSPAGAPI
LFVPKKDGRLRLCVDYRGLNKVTVKDRYPLPLIDEMIDRLSGARVFSKIDIRDAYHRIRVNENDIWKTAFRTKYGNFEYL
VLPFGLCNAPATFQAYINEALRGLVDVSCIVYLDDILIFSKTEKEHDTHVREVLDRLKQHQLYANTEKCSFYTQEIDFLG
YIVGVDGISMDRSRVSAIEDWPAPRTYREVQVFLGFANFYRRFIYAYSRIAAPLTDLLKGSVKGRKTGPFILTQDAVRAF
EELKQAFADATMLNHFDPGLPSQCETDASGNGVCGIFSQLTPETFQRWKDRGLITSGDTGNGMPVGEGFFTEPTRRREWR
PVAFFSKKLSLTQRRYDTHDQEMLAIVESFKIWRHYLQGCKYPVQVLTDHANLRYFLTTKSLTGRQARWAELLSEYDFFI
RYRPGRLNPADAPSRRPDYDIVDGDEDPTKGPLPSLQKKLAAGGWGSLKLGNGAGKAAARPYTGGGELGSPQGTGTEGHE
LLVPRFAAIELAEDETVYNLPTQRLLEFIGELQQGDALTAARIQKLKEEGSGSNLEGASPERGGAAEEPSRWQLGECGLL
LLNGSVFVPRSRAVRQELLRIHHDDPHAGHFGLEKTEELLRRKYVWDKLRTDVKEYVETCDVCQRIKVPRHKQYGELAPL
PVPKGPWQDLSMDFIVDLPKSTRVKGYDSILVIVDRFTKMAKYIPTHKKVKAPELADLFLDAIIRDHGSPKSLVSDRGSL
FTSKYWSAFCYHLTIRRLLSTAFHPQTDGQTERQNQTLEHHLRAFCSYHQNDWPRHLPTAEFAYNNAKNATLKVSPFYAC
YGYNPSLPSDVADDVLKGGIDSRNVERDRGTEYPSVPEVKARLELLDRIHGEAAKSIRRAQERQAEYYNRKHLPMKFSIG
DQVLLSAKNIKTTRPCKKLSERWLGPFPIIRVVGKQAYELKLTSGFKSIHPVFHISYLEPYKQRPGAEPPRPDGVEIEGN
TEYLVEGILDKRMHYNKVQYLVKWEGYPSSENSWEPLEHLENAEEEIAKYEVASRDRPAARRRCG
>Gypsy-1_DSim_env#LTR/Gypsy 5208-6659  [Drosophila simulans]
MHFVLLLITFVMITTSEIIDYSNHEFFLFKDKKDVLTYESYADLYHVTNLSFYKEIINLESGYVRKDKNTRTQWEITYEI
QIIELILSQLIPTRSKRGINELGTVWKWLAGTPDHDDFIKIQNKINDLIENNNQQFIINSKLFKEIKSLSDHFKNIFIDQ
ELPLRKHRLRLLTFDLQNIIDTITLAKIDLFNTKILNNEDIKEILDHEQQPVLIADLMDIAIFKIVLHKELLIIYIKYPV
ITNRCEIYYARSISHNDGKLLISNQVAKCENTFYEISNFKNELLNNYCIISKDKTCFTRLLNGEKSICTKILEKNKNIDI
IQEGAILINGNNIVNDSHLNGSYLITFNSTTTINNISYTNSENKILEYITTNHFKNLEISEYIKSNNSELSLDNINILNP
FIEIYNWKISISFILLILIILYFITILIIKFRYYIFVTKQKRPEPEKPNNDVEFLTELNERLNEINNEAGRVILEGGELS
NPRT
>Gypsy-1_AN_gag#LTR/Gypsy 32-1165  [Emericella nidulans]
MRRPFTMTMEEESVTLLLQQLQELRTEMRTQKQQLQEENNSLRAELQAVRNSQLRNHPPVTTTVTSATPTPYERSYPRPR
HPDVEPFTGEDPKDYPPFQMNLRTKFAIDAACYPTEEEQVYYAYSRLRGKASQRVLPWLLARQKSETPVLWAEFSAVLDK
AFGDPDRQRKALVRVNTIKQGXRDFEEFLNEFDEELLNAGGINWDDNQKKALLDTAINVELLKAMVGIRQEDSYDNYCNQ
LREINHNLQRVARLTXKGSHAAVPMHVACTRPAGGSDRTGTPDQMDWEATHAQIAALQKEVAALRMKGTRTPRKASQAPA
EEKQKRLSEGKCLRCGDPDHFIQECPIKPTRRPRQVATVQEEQDQIDDYSKSESENE
>Athila6C_env#LTR/Gypsy 7236-9095  [Arabidopsis thaliana]
MSNYSGSSSVDPDYNMDETESSSSRPEREQREYESFRRKAEIARGKRAMTERYELIDEDLEDEYMPEQTRRATKLLHKPD
ILPTEEYVKLFKLNEFCSTRYPCSTSLAQLGLLEDVQHLYQSCHLDTLMAYPYVAYEDETIQFLSTLQVELYQGMTSDEL
DCEGLGFLRFSVYGHEYRLSIKRLEGLFDFPSGTGSKPKYEREELKDLWITIGSSVPLNASWSKSNQIRSPVIRYFQRSV
ANVLYSREITGTVTNSDMEMIAMALKGTLRQTKNGMSLQGEVNDTPLSILLLIHLCGYKNWAVSNNRKRARGALCIGGVV
TPILIACGVPLISAGLEPRAMDIEHLRHCEFLEFAMVDDFHRFRFEHSTDRRANILLPSPEVTRIIEGDNIDFRPEIGRL
YYENAPPLDEDDLLEEAASDGMDEDGAVKFDTSMYHFAEHVPPARQSKSLTEAHKNNSKLQKWCKKQDKLIAKCFKLLTD
KLSCSSSTTAIPQVQPPMEMPSRRINAPAHRPELSEQRVPHVQARHSSFESREHKRRRKATLTRSSSRSRLIHSRRSLDR
VAGRSRRREVEFPQSGAGRHRADEVEYPPAGADTEQGGSSMAWEQSQAAIDEQLRSFFD
>PyERV_env#LTR/ERV1 gi|26006407|gb|AAN77284.1| Env (envelope is ERV1, pol is ERVK) [Python molurus endogenous retrovirus]
MSHLPQLGRILWFPVALQLLSVALCAPNYAQHNPHQPQNLTWAVLDAHADILNSTSSMAVPGSWFPDLYFDFGVMMDTTT
SPNRPGMVSHRWIKRWPLYVCPGHVRATTYRKKCGGENDYFCADWSCVSTGEITWNPPFRGDLITLRRTGENVRCEQNQF
GTYVNCNPVKISFTTEGKRHTGWQSGVTWGGRVHDKTGEPGNIFTIRLTQTPIEPPVPVGPKTIPANRREPPPQPTPTPG
KSSPTSIGYSFSPSRSRPGNPLWDIVTATYHMVNDTNPNLTTACWFCYDVRPPYYEAVGLVSPYNTSSNDKACRWKHGSQ
TLQSISGKGTCLGQVPTQYKQYCNTTHSEVDTTLFYIPPTDGWWACSTGLTACAHGHVISTKGFCILVQVMPRIYYHTEE
EVYNTYSGSELIRHKREPISTLTVALLVGLGLTGAGTGIASFANQYVQYHHLRAAIDEDLERIETSISHLQKSLTSLSEV
VLQNRRGLDLLFLKEGGLCVALREECCFYADHSGIVQDSMTKLREGLDKRKKEREGQQGWSQSWFNFSPWLTTLIGTIAG
PLILLLLACTLGPCILSRLTKFVETKIGALENMVLERHHYQPIRSGENMEKASLRTLDSDEELESTSFTFKTKTEEMLE
>PTERV2a_env#LTR/ERV1 5767-7472 via tfasty with FMLV_env, 3 frameshifts. (other proteins > 90% similar to HERV-R) [Pan troglodytes]
METSSLQGPPQDKTLPCLTPHLLLALFLPWVIGSSNPHQPYRLTWQITNFETHEVLNETSHVAPLNTWFPDLYFNLDKIA
MIDEMEGGEWRKQARRVSLSRNGFYVCPGFRTGPMKKTCGEIMSLYCASWSCVXTNDGEWKWETQPWYLTMSYVQPCTRT
RYSATCNLIRVKFEEAAKTDPXWTTGLIWGLNLYQTPAXGLPIQIRLLVNPVSASVPVGPNPVLTGQSTFSVREPAESPD
HRFPVSSTKSXSPSALPRAPSTLPGXTRLPPDPETSNRLFSLIRGAYLALNQTXPESTTSCWLCLATGPPYYEGIASVGN
LTNSTSHSGCAWDQHKKLTLTEVSRSGTCIGRVPPSHQKKKKKKKKKNTSHRMKREPVSLTLAVMLSDGVAAEVRTGTAA
LVRGSYHLQQLRAAVDEDLRAIEHSITKLEESLTSLSEVVLQNRRGLDIIFLKEGGLCAALKEQCCFYADHSGVVKDSMA
KLRKRLDDRQKERESQQNWFETWYNQSPWFSTLISTILGPLILFMLILTFRPCIFNRLLALIKDRLNIVHAMVLTQRYQA
VKTNEETQD
>REV_env#LTR/ERV1 gi|74715|pir||VCVDAR env polyprotein - [Avian reticuloendotheliosis virus]
MDCLTDLRSTEGKVDQAGKTLILLVVWWGFGTTAEGHPLQQLWELPCDCSGGYVSPDLPITPTPSIAVASPLPDLRVWLQ
GSWGWGGGFRQQWECVFKPKIIPSVQEQPGPCECLTIATQMHSTCYEKAQECTLLGKTYFTAILQKTKLGSYEDGPNKLL
QASCTGIWETSMLGPRCPCVCLDGGGPTDRFGRICAEGLEEIIRHSYPSVQYHPLALPRPRGVDLDPQTSDILEATHQVL
NATNPQLAENCWLCMTLGTQSPQPSRRMAMSLSMEIAVLASLSGATHRVNRCQLLCREADNRTGIPVGYVHFTNCTSIQE
SLTRRVIYEILRDYVLHRVMYLCVEQHAYTALPNKWIGLCILASIVPDMSIIPGEEPIPLPSIEYTAGRHKRAVQFIPLL
VGLGITGATLAGGTGLGVSVHTYHKLSNQLIEDVQALSGTINDLQDQIDSLAEVVLQNRRGLDLLTAEQGGICLALQEKC
CFYANKSGIVRDKIRKLQEDLLARKRALYDNPLWNGLNGFLPYLLPSLGPLFGLILFLTLGPCIRKTLTRIIHDKIQGSK
NPRISPAVQATPNRDGYPRSMV
>WEHV2_env#LTR/ERV1 gi|4809001|gb|AAD30055.1| envelope polyprotein [Walleye epidermal hyperplasia virus type 2]
MDSSRLLQIAAIIICAAGRARGTLTPQLYGLGEEAPPTNSSPRLQDLCTLAWLFHAATEHPNLGENQEITLSEGQIYEAS
GEGYSALIMINNLQFQVKEKTGHCSMVSPETVGTYECNHLGCRKPLPEDKRCTAAHARFLLFNPEIPDNYVFTTSPPTTT
LSASPPRSEELVKCSISWVIQFILENPHLGKMRQGKLEKNLRITEPLHLFDGKVGRVRAKIDGVVFDISAKVGPCARSAL
FKGTYFCDGNNNCFMENDPDTKVKIHQARMNLKRPRKGRKRYRIRDKRMVQTTLPQALTLKQLDNVWNCVFTISEFQAVK
NLQAEIENETCFIYWTQTIQGKLVSYRTTEDPKCCIRHSRISGCCKSTPMEMPRVILENPCTKSLIAKGAKIPPYVPEEE
WTRNVCIFSWYPRAGFSQALAVPQKCCDKLRGVLPSPPPITVSTTGVKIMDGISSGDYEEYIPARTSLPVKTAPKQVTES
TLPLTSVTTLSTTTFPLPAPAPPTIEERTKRSETIVLTPGPTNTEETSYNETLEYNDFSDPHEVFDEDLWNRLTMGNIKT
QIKMTCVGQISEDLYLPTDVIQAEVKLTGRGDDKIECQVVYSPKNGLAYVNTSCQIEFQITTEKIKIKVPKIKEGQYDWH
HKTTSSAGVTGNKYTLIIENCTCPQLTQLPLGGIVVTSAPLTILYHPSSILVYTALHFDLKVFKDQSHCAFTDTDWNAYI
LKPLAQAIGALRPRNKRDLGIHSSLNSWWNLENSMGLGLESYQRQDYDERMLNLLADISKQQALDTRNQLSLGKALTTPA
YKISINLARAITKATLAHEKDQNLKGHCRHMAGQISTQIQMDLRDISHAHLPWWLLEGIQEKLKLPKGLKLVPSHYSPTL
LAPQIGWNSSTLVIGLTHQLQAAKQLPKMMKGRNMGRFQQWTPLPPTVFVNTTHVLPIDCPEQNGMFICDEIPLMVPLDT
WEKNTTVLYRHTPQVWLTPSGQACTNVKQISYQGLKCPLPMPGCFGPTHYWRAGDLNIVPVQQAQINVSYELPEHNQNQT
DELEQALDKAITMAEREFGDVLEIQMALVHDHETKAKLLEGKALKSIQDTEAVLFKLDTEKWLNSFYSWYDGGWLSRIQL
IVACLTLTVPILWLMNLVLCCYLKKKIRKPARQHTIVVQPDTNHLPMTTYKSIPALNRVLPFTDNVPYIAVNLSKHLMAE
RLVFTLPRFSPEMKEMFNKGTLTTRDPHVTLAYGKEECARWKEQNPFTIGHGIAVTISGIVTSPVGTMWVLNVQQPDLFD
IFEVPGSVPHISVSVSPDHEPKDLGIYLAQLQHHEMHPVSPGLFRWGKNAWFLTANFAAQGIITEN
>SRV-2_env#LTR/ERV1 gi|334388|gb|AAA47563.1| envelope protein [Simian retrovirus 2]
FSLLIEMTLKDIPFWRVLLIFQTARVYAGFGDPREAITMIHQQHGKPCDCAGGYVNAAPTVYLAAVSCSSHTAYQPSDSL
KWRCVSNPTLANGENIGNCPCKTFKESVHSSCYTAYQECFFGNKTYYTAILASNRAPTIGTSNVPTVLGNTHNLLSAGCT
GNVGQPICWNPKAPVHISDGGGPQDKAREIAVQKRLEEIHKSLFPELRYHPLALPKARGKEKIDAQTFNLLTATYSLLNK
SNPNLANECWLCLPSGNPIPLAIPSNDSFLGSNLSCPIIPPLLVQPLEFMNLINASCFYSPFQNNSFDVDVGLVEFANCS
TTLNISHSLCAPNSSVFVCGNNKAYTYLPSNWTGTCVLATLLPDIDIVPGDAPVPVPAIDHYLHRARRAVQFIPLLVGLG
ITTAVSTGTAGLGYSITQYTKLSRQLISDVQAISSTIQDLQDQVDSLAEVVLQNRRGLDLLTAEQGGICLALQEKCCFYA
NKSGIVRDKIKRLQEDLEKRRKEIIDNPFWTGLHGLLPYLLPLLGPLFCLLLLITFGPLIFNKIITFVKQQIDAIQAKPI
QVHYHRLEQEDNGGVYLRVS
>PRIMA4_gag#LTR/ERV1 1205-2542 [Primates]
MENAGTKTKQPEWESYFQWYLESSKRGEDRLISLQEANKQLRNANQELSNLLSLLKKSSESLTSPLAPPPPPPTPPLYPD
LSELPGPDLFPPSPACSNLPSSPPCLPLAQQKAVGSLTSKTPPPDDSLTAPMAASHLEDVEKGDPAGTSLMIAPFREQPV
TGRGTPAIVYQPWSKAELRGIVKEFPDPHKDPIGFAREFELIIRTYDPGHSDLYQLVHMLVSEAKAKEWLEKAQWSDPIA
DLTPEGPIEPQQPAPTNPEDRHKDARERATALLNIIPSVFQRVVDWNKIQQCRQNPNESVLDYFTRFDKTLRQYCGMSAD
CFENNKNDTLLNANFLNGLDDDLATLVKRHMTNWATARTNELVNLADQLSRTMIKKEKQKIARVMHLQLKQLTSQTSQPQ
KDFKLPRSENSSLPVCYYCKRPGHLKRDCLRLKQKKRQENATQED
>MacERV1a_pol#LTR/ERV1 1991-5614 [Cercopithecidae]
GGRGSDPLPEPRVTLQVEGSPVRFLVDTGAERSVLTKPIGKMSKKTSWVHGATGIKKYPWTTQRTVDLGTGKVSHSFLVI
PESPCPLLGRDLLTKMGAQIHFEPEGPKITDSQNRPISILTVTLEDEYRLHQEQKPPDQEIDSWLQRFPEAWAETGGLGL
AKHRPAIFVEVKPGTDPVRVRQYPMPLEAREGITPHIRRLLDQGVLRACHSSWNTPLLPVRKPNSTDYRPVQDLREVNKR
VMDIHPTVPNPYTLLSALHPEKQWYTVLDLKDAFFSLPLAPKSQELFAFQWTDPERGINGQLTWTRLPQGFKNSPTLFDE
ALHEDLGEYRRQHPEITLLQYVDDLLIAARSPETCVQGTEDLLKTLGELGYRASATKAQICKSEVTYLGYLLKGGQRWLT
KARKETVLRIPRPQSTRQVREFLGSAGFCRLWIPGFAELAKPLYQATKERQPFNWTEEAELAFQQIKTALLSAPALGLPD
VSKPFHLYVDESKGVAKAVLTQYLGPWQRPVAYLSKKLDSVAAGWPPCLRIIAATALMVRDADKLIMGQELRVITPHAIE
GVLRQPPDRWMSNARLTHYQGLLLNPLRITFLPPTSLNPASLLPNPDLDAPSHECTEILAQVHGVREDLQDRPLPDTELI
WFTDGSSYVHQGQRYAGAAVTSETEVIWAEPLPPGTSAQRAELIALTQALTLGAEKKLTVYTDSRYAFATAHIHGAIYRE
RGLLTAEGKEIKNKQEILALLTALWKPKKLAIVHCPGHQKPTTPIARGNFLADQTARSIAKAPSQLLALQLPDPGPRXLP
CFPDYTEQDREWMDTLPLKQVKNGWWTDINDQTILPEKLGRQVLEHIHRTTHLGARRMIDLIRHAKFRIRRIAELASDVT
TNCKACQLNNACPQTQTAAGIRCRGTRPGIYWEIDFTEIKPGKYGYQYLLVFVDTFSGWTEAFPTKRETAQVVAKKILEE
ILPRYGFPVQIGSDNGPAFVAKVSQDLASILGANWKLHCAYRPQSSGQVERMNRTLKETLTKLTMETGANWVVLLPYALF
RARNTPYRLGLTPYEIMYGRPPPLVPSLKDDLLKPETENVSELLFSLQALQKIHQEIWPRLRELYEAGPPPTPHPFQPGD
WVLVKRHRQETLQPRWKGPLQVLLTTPTALKVEGIASWIHYTHVKPVDPXSDLLEPSGAPVTWTVDKAKNNPLKLTLRRH
PHGRNHV
>MacERV1a_env#LTR/ERV1 5577-7229 [Cercopithecidae]
PCAVIPMAVTMSSSPMLLCLMHLTLLTAAPSNPYVWRFWLYENKTHPGETPQAGKLLASADCPPSGCNTIVYLNFTRFQI
AQPAIPMICFEYDQTEYNCKNYWWHQSAGCPYSYCKTHSVRYRREQQGWYFYQTESPVTYTWIIRDPWDSRWTTPQHGGV
YYSSTSTWPSSHLYLWRSLVQIQPLIHTQIHRQETKLSQDLQPFSWLTLLQEGLAFANLTGLGDLSSCFMCATLGRPPLT
AVPLSSPPTNYTGFNSSIVTIPDVALYRDPYQEKYPYCYSAFSNSLCNQSATYPNSPIYAPPGVFFWCNMTLLKTLSKSI
SDGQLCIPVTLVPRLTLLTPAEFIGWAGTAPTETARHRRAVFLPLIAGISLTTSVVAAGLAGGALQHSMIENDKLLQQFS
VAMEDSAYSLASLQRQLTSLAQVTLQNRRALDLLTAEKGGTCMFLKEECCFYINESGLVEERVQRLHKLSLEMKKQQFTT
AANNWWSSSMFSLLAPLLGPLMSLLLLFTIGPCVVNKILQFVRERFDTIQLMVLRSHHQPLLHPESEATL
>MdoERV1_gag#LTR/ERV1 277-1797  [Monodelphis]
MGNLAWIXYFXYMFYDLXFVTIPDXIYFLLSIYETLQWLNISMYRLISFIPTYAGALFVVTKLYYALKXGVHLIFGKKAK
DNEMAVTILAIKEEMMQLKEMXKQLSEEKQCGKGINTQQDIPKNNNVVQQENTDGAEGGIPILPLRDQTSLQPDSGIIHI
KTHKPFTTADLESLKRRMPSWFSEPMRCLKEFKRAIRLYDPDFQDTEILLSELFSKREKQQFLDETRXNPNLTSWPEEGT
DLELSNNENLRYLRKAREDLLEAMKSFSKRPDTWGKFERLRQESGEHPSKFLDRVIEVAEDVLGFENLTEQNLQHIRRQF
VKGSNTPIRSYFKLQCPDWETLSLEDLRKTATYIFSGHKEMLEEKDEIIKDLKAKLKEANSSSKYKEIEEIKNLATLQSY
KPTRNYTQSNQRRNLPRCFLCGKMGHMVRDCYLKAQLFQANNKQRSWKSNVKYSSNNTQTNAKCCDCNCKXSLQAPNLET
MERYIQQGAKPRYSQVVSGAAKQSQL
>PRIMA4_env#LTR/ERV1 6496-7911 [Primates]
RPLVAKMNFTTLLLLILYPYTFLPLPPTDAHETNLFLQWAQDYADRLQKDACWICGLMPLSSGSGLPWWVSPFQGQDWIE
YQKFITSQKWSGILSAGITKDNIYNWPIKNTLKNKGHGKRFSMERTSSLALTLASPQLKQKVVTTPQTTAHFQNGIMQIW
DGFIWLTPSFGQLSQNAPLCWEQRNHTKDLWPNSTRDMGWIPGERCDHIIILQDTDWHATDWVQRPGIYWLAPNGTYWLC
GTNLWPRLPPGWLGRCSLGYAWAQGRVIQTLPKPANLFHLQSRWTRSVFQWYDHLASIFVPQIGIEDVIWHIEALTNYTQ
KALNDSRMSISLLNNEVMLMRKAVLQNRMALDILMAAQGGTCAIIKTECCVYIPDESKNITRLMTDMKTQITNLSDPKPS
LIDWLSGWFGSWGTWWQKLLLIIGIIIIICVLSCFCLQCCYGMCLQISQRATERARVMIAQRIALIEEAVI
>MdoERV3_gag#LTR/ERV1 895-2898 [Monodelphis]
MWLQPMSALLRNWLISSMTKCIGFLVGVPLGWYFSETINLFVTLTFIFLGIVIVVLTMIYLTSKREHSLVPSITKQIKEL
HTFMENQITEQYNITDQRIRELHTFIGEQLREQNNIFTQKVREQNIITDQRIXELHTFIDQQHKEXNTVTDQXIXDQNAF
IEQIKKEXTFIYQQLVERDEVREKKWGEIKTSLDEVREEKWGEIKTSLDEIXEEKWGEIKTFLQNIERELKTSHNRSDLT
LHPPSLSDSLTHPAQNDLAQIAAPSHQPAPPHPDHPAPPPAILAPPTLAPPPIHASYPAPSAPAPPPALPPTHAHAPAPP
PVPVPALPPALPPTHALIPNPHAPTANNPNLSPSLTYPIENGASSLETVTPDNLDRSLFPLREVPTFNKEGNLVSVRHYT
PFKPDDLEKFKHNVPSFEAEPMLVIEKLENIFRNFDPSWLDVENLLDTFLTKREKNNVISLANKKSGRGAHHWPTVDPHW
NPNIAQDHTKLALAREALLKAMRDCSDSPDAWEKFEQSRQEIDETPSHFMDRLIDVGSTYMDLDLXREKDIKHIRRQFVR
NCCSAVKDYFETSCPNWESMDLEELRKVATYAYKNRTKKPETHNKSVXDLKKEIEILKEQLKSKGETMAPLQESTDRSLT
NPLICLFCGKRGHAMIVCRSWLRENKK
>SFV1-1_Crp_gag#LTR/ERV4 0-1964 (ORF starts on last base of LTR)[Crocodylidae]
MASRTGWSAADHDRDDQSRCQVCPWASGHRTTRSSDELWGHLQFHQAPSHADNDGTQPFCVWHQSDPRRPWEVRLTGRAL
GCVLRDSNVSFAVPSNQDVPDDCVAVAKELPSGDQQDTDPSQDWDAFTKKIVALTGEKRCTEGVNLSQFVIPGGASHRRL
RGVFTAVGAINDKKKGKKAECLRACLEGFAATLGRLNDYEMALITISRAAGRNDPSSGGSHEHNVFEPLPATSTAPPTTP
PPPPYPEGKAPPSVVTPLYPPLPDPGGRAQATPPTDTTPPTPGPLPIPPLQAQPVEIVKTRQDGDGNLITERTTRDRDRG
EMNELINRTARQENETPAQWLGRLVLECGHETLSQREAISLVTHGSFSLGLLPGSTVLETDNTPWPISLSALVAGAVHEK
PHQVHEGAQPIHAPHSQPFVNALAGAVYLSLPKRRITASRAPLTTPARSSGSTESSDELADSATTPTRGGGPSFPRRLLN
AFTGISDDGGPEITRPSQTPVVRHDPWPQRHCKDPLQLEIPPAILQATIDIYTDNPEMAELQTSSLHNQPLSSLYRFQHR
RRQQQRRGKPELVCAIEVTPVATAAHRKEQRQTLNSTQGIPRRYPERTPEERARFGFLLNQAGIKKEVLRNLDDDTQKQL
ATQLGFQFPRKPKNE
>SFV1-24_Gav_pol#LTR/ERV4 2041-5482 via tfasty with SFV1-14_Gav_pol, 2 frameshifts and 1 stopcodon. [Crocodylidae]
VTAIGTIRATGGMTSCTDGDLKRNNQIREKQIAYQKRRYEPITDAPRRYETKQIETKPNEPTRTKSNQNVQKQNETRKSD
LKRIELKRSETEPNDLKRTKFRPELKRSESVIKPQVTITTLPREIQEGVEIERLEKLNVRTTVNVASNNPKIFDNDQRPY
ATINVQSPDDPLDVTVAKFLLDTGAQVNVIKPSVPHQPTTKVMMVQGLNAVTATKRVKFLVEGHQKRLDAVLGSINLLGV
PGIRALDLKYKVLEALPITTMPETEWHQPSLRVSSMWRYTPIPTKPHLQESLDNLLDGLVKNQSITPIRASHRLSPGWGI
PKPGKLGEVRLVVDYREVNKRCAVLTQPAPCTLIQSLNEMAIYQAKEWVGTTLDLQNMFFSIPINDSEGILNMCVRGRMY
RWNVCPQGYCNAPALATSAINESLERFYQCNPDACHVKLWSYIDDIAIMGRTTEIVSNITTTLVQHLTQDGWVVNEKKSQ
IIPTNRISFLGTTFAGATRYGVAHDTVNLDLQDRTPIRKADFQSLLGKLNWYRHYITPQHLPILARIQRQIRQKTRQKTP
WSSKDTKALNELVTSVQATTLHAIDFGAPLTIIIGFTEEHLFVTVKNPDENLVFVAHRTLQAAQHRYGVIGKTLLAAQLA
EPLAVGRGKLKAIGATLLPRLFHDRPDPCFQGELSTWSALVLNHLYQWHAWKHEDIPLSPVITETCSIVLYGTTQPAWMA
SDGSTREGGKYGFYCRPCSEHRIHSGCDSAQKNELMGFKEVVQHCLQNHDGTLPIPVIAIDSHYIYKIVTGTASPKEHLT
LWEEIYILLSNFSVLPLIRHTNSHCSNTDPIHETIDKLLEQSTEVNVLATQAVDDTTCVDPYLGWLHEHWGHPGPKACYQ
RWHGASQEKSKFGSHEDWKRIAQACPACAKEKLHPTGNTKGALDKDTFLPGKAWQIDFLGPLPGAAVPNKGLIIIDLGTR
QLTVVPLRKTHAAAVITALTGIFAVWKIPHVIQSDGGPPFTSKAIEKFAASYNINWHHHLPYHPQSNGVVERAVGIYKEA
LxVNGNGTYKNWTRLNHEVLINLNSTKQLWMEKDTNPIKPWKQKFKAMELVWISLPDPKNRHPRVLKGIIRSPDKYPNTY
LAELEDSTRLLLVHHNWLARRAITDAPP
>SFV1-23_Gav_gag#LTR/ERV4 30-2045[Crocodylidae]
MESELIEGCPWRSGVCPNTNPEDLWNHVAFHQAANQASAAIHGYLSLDGMSGKERAVRLSPGALGCILRDSRAVYHPREE
NGAASRARTKSPAAASXSPAQELARCGKYVTEGGKEPLPDRFKYPSLTSGSRGHELITQLREALERDGKTTRWTGLKKWK
KGSIINVLFKEYISLLGEFMDLGKQLKAAVEATAKNVAERPLKDGADGDESAPTPEPTSPPAPPTKSRPPTETSPIAPPN
ESPPPATAPPAVRTSPPPYVDPRHQEDVQENCSQTSCRKCNTVTVSVGTDTIKEANVTDAIIRPQRTSETISINTDKETK
ETSTEEGLVTAYPIAVQKLVTDPQGGTRLTVTTRSRTRSEMSELKKDTSIRNDETPITWLGRLVAEAGSETINQEEALQL
VRSSAWSRAKVVDPVPVLANYYWPIPVPALAVEALQRKVHTWHEGAASRTSAASLVYAVIGASYAQWNPAQQALNLTPAQ
VQGAWPHRYATTPGDVPCLAEAIEAATEIYGGTQSITARLLLSASINGPVIHTLGQLDQLQGAMKQKAQKTAYPVIDGEH
GATSAYPIEDSSVHPQWADQKSRDQIHQRQPTRKPPTTTRYRPPRSSPPPARASTSKYSPPQRTPLERAVFSFLVAKSGL
SKEKIRRLGDDGQQDLARTLGFQEYHAKPKNK
>ENTV-2_env#LTR/ERVK gi|33354437|ref|NP_862834.2| envelope protein [Enzootic nasal tumour virus of goats]
MFVFFHRMPKHRVGYRKGWYARQRNSLTHQMRRMTLSEPTSELPTQRQIEALMRYAWNEAHVQPPVTPSNILIMLLLLLQ
RMQSGEAAAFWAYIPDPPTIQSLGWDKEVVPVYVNDTSLLGGKSDIHISPQQANISFYGLTTQYPMCFSYQSQHPHCIQV
SADISYPRVTISGIDEKTGKRSYRDGTGPLDIPFCDKHLSIGIGIDTPWTLCRARVASVYNINNANTTFLWDWAPGGTPD
FPEYRGQHPPIFSVNTAQVYQTELWKLLAAFGHGNSLYLQSNVSGSKYGDVGVTGFLYPRACVPYPFMLIQGHMEITLSL
NIYHLNCSNCILTNCIRGVAKGEQVIIVKQPAFVMLPVEITEGWYDETALELLQRINTALSRTERSVSLIVLGIVSLITL
IATAVTASVSLAQSIQAAHTVDSLSYNVTKVMGTQEDIDRKIEDRLSALYDVVRVLGEQVQSISFRMKIQCHANYKWICV
TKKAYNASDFPWDKVKKHLQGIWFNTNISLDLLQLHNEILDIENAPKATLNIADTVDNFLQNLFSNFPNLHSLWQSILAV
IIIVSVIIIVICLVPCLLRGLFRDFLHMRAELLHLKYRHMMQYRQLMELLGNKERGAAGDNP
>ERV4_MD_pro#LTR/ERVK 2341-3252 [Monodelphis]
WADISPGTGKRDAGLLREPLSSSLTRATAGSAGLDLCASTTRILTPEEGPIVLPTGKFGPPPPGMFFLVIGRALTTLQGV
VVHPTLVDNDYTGEIKIIIESPHGPVTIPAGKRLAQALPLPMIGNFPAVAHTRGPSSPGSSNIYWVQQLTESRPTLQLKI
EGKTFTGLLDTGADSTVISQAHWPRSWPLQPSSTHLSGIGQVQDTLQSSKILNWQDTEGNRGTTRPYVVAGLPVNLWGRD
ILAQMRLLMVSPSDPVTTMMLKSGYLPGKGLGKREQGLPHPISFRPHKDREGLGLQSFSQNFS
>ERV4_MD_env#LTR/ERVK 5913-7717  [Monodelphis]
MIPICLILFLSICLSSTSPESPHLLVHQTWELINPINQLTITSVSSSHWPRGRWFPDITVDLCTLGIPYKSSIHYCSPLV
PGPQIQDQWAQHTQFPLYGCPGFGQPDHCGGHSDGFCATWGCETIGTAHWIPNKDLITLARKASKPKNCSFNPPNCNPLI
IKFTNKGKTDPRWTEGLTWGLRLYKIGPDDVLLFTLRLRVTPITTPMGPNFVLTDQRRPSYQYPQPPRPLSPTRFPSSTL
SLTPTPKVPPGTADRLLNLIDSSYLALNATAPNLTISCWLCLHPQPPYYEGIAFTDHPHNTSAPSPRCALSPHRLTLAEV
SGKGLCLGHPPSSHSHLCNVTLPISHSPHYLEAPNNTFWACNTGLTPCISLQVFNTSSEFCVLIQLWPRITYHTDTALDK
ILSPFPRIVREPLSTIAIILGIGGLAAGIGTGTTALLQTQHLTALHSAMTSDLEALEKSVSALEKSLSSLSEVVLQNRRG
LDLLFLKEGGLCAALKEECCFYADHTGMVRESMAKLRERLALRKKEAEAQEGWYEQSFEKSPWLSTLISHIIVPFIIILL
ILTFGPWAFQRLTGFIKGFIKSNIDSALKVPYGPISSYRNSRY
>SFV1-17_AMi_gag#LTR/ERV4 33-1892[Crocodylidae]
MEVELIKNCPWRSGGRRADNADELWAHIAYHQAGGAETGCVGGYFSLKGEEGVTKEWATDLSPGAFGCVMGGDRVLYRPR
EETKTISLARVKPAGATNPTPAQEYARCIRHVREGGEPTPADKFNCPTLALGSRGHELLTQLRESLETEGRTATKWAGPK
WDKGKMINVLFRAFTGVLRENADLEAQLATAGKAAAEAAAKEGPEXPPENGAGGKGTYAAPPENGAAEKGKRAESPQGGS
RSVTPPAVXPPEVAPVMNPPPYGGGWPAASLPTAPPPEMTPPAIPPPEAAPVINPPPYGGGKLYPALPVNPDPTPVQAHP
IAIMKHNIDDQGAARTTITYRTRTRPEMQDLCKESKLRPGETLAVWXGRLLVEYGSETLDXEEASFLTRQATWSGGHATD
LNTVTGNTHWPIPFPALVAGQVCQKAYAWHNGRPLKPSAEQLLLAIIGVSYASWNPRAHQLGLTPQQRDGPWPHRHLTDS
GQVPTTMGSIEACVEXYGGKEAVTLRLLLGPLAGQPXGNLLSELPRLQALMDSTTTNPDGADPRSSACPVEHLEPDRRQP
GPRREFRVPPPRTPEERAMFGFLLNNTQLTKQQLRILGDEGQRLLASAMGFKYQDKPKNE
>SFV1-5_AMi_gag#LTR/ERV4 12-1808[Crocodylidae]
MGFKGTVMEMNLIGCCPWHTGIRRVENANDLWVHIAYHQAVEGDERNIDGYFSVKREEAVIKEWRTKLSLGEFGCIMGSD
RVYYRPLEETSTISLAGVKAQKAEKLTPAQEFAQCTRYLREGGEPTPTDWFNCPDLVPGSRGHELLVQLREDLETKGRHV
PKWGLTKWKKGKMMNVLFRTVAGLLREYANLEAQXHTAGKESLERTAKSSGATLINSAGRMMPLTENGAERNASHPGNPE
KRGGASEDPAGIHLATPPPEVTSFPMAPPPCHGEGAMGGGMYPALPXEEFNSLSAAAHPIAVMKRVADEEGTTRTTVTSR
TRTRPEIQELCRESKIKPEETLAMWLGRLIVEFGSDTLDREEASALTRQAAWSGGRATDLNVVTDSAHWPIPLPALVVGQ
VTHKFHTWHEGRPQKATAEQLLLAIIGVSYLSWSPRANPMGLTAAQRKERWAHRHLSDPGAIPTPLEAIDACVEVYGGAN
AVTLRLFLNPMAGQPVGNLLGHLPRLQALMKQGEETSDDIRDRSSAYPVETPRPRRQEFTPRREPWWSPPRTPKERNMFG
FLLARSGLTKPQLRILGERTQRRLAEALGFKFEDPPKNE
>SFV1-3_Crp_pol#LTR/ERV4 1952-4999 (SFV1-15_Crp_pol more than 90% identical)[Crocodylidae]
VVAVGRTGGVIHETVTNDDTRPYATLTLIDPANPLKQVRVSFLLDTGAQVSVITADVPHQVTKKVIMIQGLNAVKPTPVI
NFLVKGHRKMLTGVLGGISLLGVPAIRALKLKEQVLQALPLTVSPDNRHRPPLCNETAWRYRPIPTKASLQASLQTLLSR
LEQEGRIAPVSESIYLSAGWGIAKPGRPDEARLVVDYRMANKHCASLIQPNISDLPQQLCTIAEYQSQPWVGVTIDMKDM
FFSIPIDDHLGVLNMCIDGKMYKWNVCPQGYCNSPTLATEAMNKCLSEFKQNQQFPDDILLCSYVDDIAILGRDSSTVSS
LTQRLLEHLTAAGWTVNQRKSCLDPSDDITFLGTKFKGPWRQNHKPPSEIFSPFTNRSNNKPPSKKEFQQMLGRINWLRH
YVQPQGLAVLAKLQKHXRQAGYCFPSKPWTSKDDQAVQDLITQCKNTKLHAINLNNDLTVAVGYTDMHIWATVHDQHHLV
LAAHRTLQDAQHRYGTVGKVLLASQLAKSVSKGHGTILGPGMTLLTQIDSDRVNPEFGGEPKTWTALVLDHQYHWSASWE
HRDTPAPCEVRDRPILYGTTAPAWMASDGTTRHGGLCGFYCHACKEHEILKAFKSAQLNELVAFCRVVRHCLERHNGCQP
VPVIAVDSQFVYKIITGNGDPELCIRTWESIFDMITALDPPPLIKHTKSHRPDTDPVHAEIDRLLQEGKQPQVSVGQVAE
LSEKDPFLHWLHEHWGHPGVSASHSRWCKDTAQPRSEGTHKDWTRIVQACEQCAKEKKHPTAVERETFAKEHFEPGKVWQ
IDLLGPLPGARRHPKGLVAVDLGTRQVQVIPLQKSTGPSVVTALRLLIARWQAPEIIHSDGGPPFTSKLIGDFAAAFNIQ
WHHHIPYHPQSNSVVERTIGLVKEKIRLLNKGSYTGWDAVLPDVLISLNADKSLWEHRTPVPVKPWTPKFLPGELVWVTT
PNPEDKHPTPTKGQVVRPGQYPNTYWVIKDVDGPTGPPHLLAHHNWLSRRAEQKVT
>SFV1-12B_AMi_gag#LTR/ERV4 75-1712[Crocodylidae]
MEQELVRSCPWRSGRRHVASSEELGAHIAYHQAGGVGERFIDGYLSLKEKGEEVSEVWEARLHPEAFGCVMGSERVQFRP
RERGNTAPLARWESGDVNPALSQEFARCVQLAREGEEPTTADRFSPPLALGLRGHTSVAPRDKKERVLDVLLRAVTTLLR
KNADLEARLLAAVPAAREAAEERSPESTPLQDGAEEGASCLEPEEKGGASGESAGTRPATPPTDATSLPAAPPPFHGEGA
VSGGHPPLSTDAAAASTAATCSAAASSRVRETIHTTHHTRTWTELQELCKESRIKPDETLAVWLGRLVVEFGSDLLDLEE
ASFFTRQASWSGGHATDIDWLTYNTHWPVPLPALVAGQVDHKPHVWHEGRPARISAEQILLAVIGSSYGSWNPREHALGL
TPTQQRRPWPHRHLRNPGTVPVTFDSVEACVEVYGGRNDVCWSTVLRALLNPLAGQPACSLLRQLPRXQALMKSDTGTSN
DPERVWQPPQRTREERIMFGFLLHHSRLTKRQLRILGDEGQWQLAHELGFQCPKDPDGDSGASSSC
>SFV1-15_AMi_gag#LTR/ERV4 0-1778 (starting on last base of LTR)[Crocodylidae]
MASRTGSKGTAVEKILIECCPWRTGGRHVADSNELWAHIAYHQAGGSTERLISGYLSLKGEEGVSNEWEAHLHPGAFGCV
VSNERVRFRPRDEVGTVSLAGVKPTGVADPTLAQEYARCIRCVREGGEPTPVDRFNPPTLAPGSRGHELLSDLREKLESE
DCVVARWTGPKWDKGKMLNITFRTITTLLRENANLEVQLLTAAQTAKEAAVKKSSEPSENPEPPPFQDGAGEKEERAKSL
GEEGAVARSSAPPLGVAPKETPPPDVARAGEPPPYEGEKLYSALPPDEPTPLPTAVHPIALVKQVTDAQGATRITTTCRT
RTRGEVQELYKESKLKPEETLAMWLGRLVVEFGSDLLDLEEADFLTRQALWSGGHATDLEVVASNARWPIPLPALVAGQV
SYKSHAWHDGRPPKVSAEQLLLAIIGVSYASWNPSVHQLGLTRAQCRGGWPHRHLWNPETVPATLDSIEACIEVYGGDDA
TMLRLLLNPMNGQQAGNLLSHLPRLQALMKPSARVSSNAEHRPSAYPIEAQRPRRYEPDAPRESQPLPQRTPEERAMFGF
LLHRSGLTKRQLRILGDEGQRNLANELGFRFDV
>SFV1-14_Crp_gag#LTR/ERV4 153-2030[Crocodylidae]
MSGYLSLRGDGGEGRAVRLTPGALGCVLKDPRAVYRPKGDTGSLALXKKKAPAVAKSHPDREFAKCIQYMREGGEDTPPD
EFNCPSLTXGSRGHELLVQLRENLEKNGRKIKWTGAKWRKGCIINILFREYVALLRELTDTRAQLTSATKAASKIXAGGP
LQHGAGHAASAPRNMLTPQRPAPPMPSPLPXKAPPVTPPAWDPPPATAPPXVIXSPPPYVSQRPLEDARENCDHIHSQXR
NNVTQDSEQXATGEXSNRXSNDKGRSVATTSETTEXNVEPEITSAYPIAVQKXTMGPXGQQQTTTTTRSRTRSEMNELKR
ETSIRNEETPIAWLGRLVAEAGSELVDREEALQLVRNAAWSRAKVVDPIPVLANYYWPIPLPALAVEALQRKVHAWHEGI
VNKASATTLIHAVIGASYALWNPTFRALNLTPDQVQGAWPHRYATTPGDVPCLAEAIEAASEIYGGNLTITVRLLLSPSI
NGPVMHTLGLLDQLQGAMRPRPQKSAYPTQNEECEIQQVYPIGSPKSPYLRPVDKRTYHQAYQKKVTRSPPQMRMNHQPR
NSPPQNPRNSSSYPPFQRTPLERAIFAFLMEKSGLSKEQLRSLGGEGQRALARTLGFEEKGKPKNE
>ERV1-7_AMi-I_1p#LTR/ERV1 1777..4587[Crocodylidae]
ATEFPFLPHSPETVNAVGIGGQPIPHPVSEPVSVSIGPLSENHAFLLSPCAPVNLLGKDLLCKLGCVIYCSPEGVYLEVP
EHRETELVALLTQEYSDPDTSFLQEELLARVPPQLWSTHANEVGHMLSAEPVHITLNPAKPLPRVPQYSISKEAEEGIKP
VISSLLEQGIIVPIRSPCNTPILPVKKPGKDTYRFVQDLRAVNAAVLPAFPVVPNPATILSCIPSDAAYFTVVDLCSAFF
SIPVHEDSQYLFAFTYQGLQYTWTRLPQGYTESPTLFSQILKKDLDSITFKGGSTLVQYVDDLLLASPTLEACKQDTLIL
LTALAQKGHKASKSKLQLCKPKVHYLGHDISAGECHLSSGRIEAILGIPKPMTRKQMRGFLGATGYCRQWIPGYAALTKP
LQXFTRDTTPEPLPWTPEAEQAFAALKQALTIAPALGLPNYRKPFTLFCHEREGVALGVLTQLHGEKHRPIAYYSSALDP
VAAGFPPCLRSVAAAALLVEKADTLVLGHSLTVAVPHAVMALLLKGKTQHISNSRLTKYEKLLLSAANVTLNRCSILNPA
SLLPIASDGEPHDCLSVTTQLLTPRTDLKDIPIPNSDLVLFVDGSCLRNDAGKLVAGYAVCTQHAVLEAYSLPQARSAQV
AELIALTRACILAKKQITTIYTDSKYAFGVVHDFGQIWKQRGFLTSSGAQISHGCYVKELLEAVQLPSAIAIVKCKAHEK
PFDDVTRGNDLADRSARNAALSGPQAPNSVFVCFSANQSPLASLSNLAFLQDQATKKEKDDWLCAGCSLHPDSLWRSPDG
RLVAPRELLPYLARLTHSEAHTSKGGMIAAVQKDWFAPNFPSMAQQYCSSCPICLAHNIGQRVKTTPAAHPPPWGPFVNL
QIDFMQLPKCCSYEYILVIIDMFSGWVEAYPCVHADSITVAKNCSKNSSLGSDCPLQ
>ERV1-6_Crp-I_2p#LTR/ERV1 2037..5534[Crocodylidae]
MLSSGFVSKVPVSGKVITAVGIGDQPIDHPVTQPLSFTLGPLTEQHAFLLSPCASVNLLGRDLLCKLRATVHCSPDGVFL
TLPQTQIPALMMTLMEQEPEPNSSSLQQELLAHLPESFWSHSTTDVGLLKGAIPVSIKVKSGASPPSIPQYPLSVAASRG
IAPVIQGLLEQGVLVPTRSCCNTPILPVRKKEKCTPEGLPVYRFVQDLRAINNFVIPLTAVVPNPATVLSQIPASALYFS
VVDLCNAFFSIPVHPDSQYLFAFTYQGRQYTFTRLPQGFRDSPTIYSQLLKSDLDTVQLPHDSVLVQYVDDLLLCSDTLP
HCQADSVALLEQLAARGHKASRSKLQFCQTSVTYLGYTISHGTRHLSPDRLSAVLSLPRPQTKRQLRGFLGAANYCRQWI
PNYSGLSRPLTLLTCDSSPDPLPWEDVHESAFCQLKQALSSSPALGLPDYSKPFTLFCHEHQGTASGVLTQPFGPSPHRP
IAYYSASLDPVASGFPPCLRAVAAAALLVSKTDNLVLGHPLTVAVPHAVLALLQRGRTQHLSPGRLTRYEVVLLAADHVT
LVRCDPLNPASLLPSPSDGQPHDCTQLVDFVSLPRPDLSDTPLTNPDLIFYVDGSCFRDNHGILRAGYAVCSDHTVVESA
PLSVTSAQAAELIALTRACHLAAEQSANIYTDSRYAFGVCHSFGQIWKQRGFLTSAGTPISHHRLITALLDAILLPSTLA
VLWCKAHTATDDPVSLGNDRADAAAKTAALSELSAPVLQAALYLSSPVSPDLPFLQDAAPDAEKDAWISAGCSLHSDSLW
RHPSGRLVAPRALLSLLAQMAHSVAHSAKGGMVAEVDRHWYAPGFSAVAAHFCRQCPQCQRHNPGRPPRQPHAFHRPLGL
YPFSHLQMDFIELPRSGPWKYVLVIVCLFSGWPEAYPCRRADALTVAKKLLFDLLPRFGLPLSLDSDRGSHFVGQVVQHV
CKVLSIRYQLHTPNHPQSGGKVERKNFDIKLRLAKTCEQTGLKWPEALPLVLFQIRNSVQRSSGLTPFEIVMGRPMRGLA
APPPQHLTHLHDSLLTYCQGLTKALKVISLQVKATAQHQSLDGGSVVNPVQPGDWVLIKVHQRKDCLQPRWKGPFQVLLT
TPTAVKVAEVSAWVHTSHCKKVTAPTEWKASLTSDTSMKIQRVPCE
>ERV1-8_AMi-I_1p#LTR/ERV1 3188..3637[Crocodylidae]
MHGGQRTIVHVPWTASDITTFCNTFPKLRESPSDFREKLQQVFNIYNPTVSDVDWLLNSLLNPEQKRLLIAETRNIQDGT
PWPQNDYNYEDNQGLQDLQNARATLLNAVTRVAQTHVDWTKVENCKQNPDEHPADFQNRLCAAIQRHTGIDPGADNMRGL
IVTTYVKNLQPKLQXKLQQLVLGWKGKPMAEIVQACVDLWEQQQAEKEKRKELKTSLMALQIQDLEQKRRTGPRPYVQPR
KNFYPGAPASDQNPHSQVNSRPNVPPFQPRFQRGPRPDDVCNYCKQKGHWKTNCPNRPQRSGPPVSCPSSPTQRFSTASV
SPECAALHSLIKTSKDASVTVTVNDKSHSFLVDTGASMSTIKYEEAGRLIPTNETVNAIGVGGQIIPHKYASPATVKIGP
LSADHAFLLSPTAPVNLLGRDLLCKLGATIYCSPEGVYLDLPSDQTQNLMLLFSTDPENNQIDGDSSNSPSLSDVPESLW
ASHLNETGKLLNIEPVQLTYNTRKPFPAVDQYPLSREAEEGIAPVIDALLQQGVLIPIRSPCNTPILPVKKPGKLDEHGK
PVYRFVQDLRKINQFVIPSHPVVPNPSTILSMIPASAAFFSVVDLCSAFFSIPIHPNSQFLFAFTYKGRQYTWTRLPQGF
TESPSIFSQALKKDLDTITLPCNSVLIQYIDDLMIASETEIACVTDTIHLLKRLAQQGHKASKAKLQFCQPKVIYLGHEI
SKGHRHLTTDRISAVLSLPKPTTKKQLRGFLGSASYCRQWIPNFSLLAKPLNELTRDDSADNPLPWTEHHEQAFVDLKAA
LASAPALGRPDYDKPFTLYCHEREGVASGVLTQPFGSFHKPIAYFSSLLDPVAQGFPPCLRAVAAAALLLDKSAAIVLGS
PLTLAVPHAVSALLNRGKTQHLSSQRLSSYERAILAADNVTIVRCNVLNPASLLPLPHDGDTHLLDHDCITQTDQVFTPR
PDLTDTPLLNPDCIFFVDGSCKRDATGQLRAGFAVCSPHAVVEAHSLPGIRSAQPAELIALTRACILAKNKSANIYTDSH
YAFKVCHSAGQIWKHRGFLTSAGSSISHAPLINALLDAILLPKQISVIHCKAHTGGSDPISQGNACADQHAQRAALEGTP
LVISLCATLNLSLSNISLLQDAAPESEKRAWLAAGCTLHSDTLWKSPDGRIIAPKTLVPQLARASHEMGHACKRGVAENI
LRYWYAPTIHAEAKKVSETCAICLQHGISKPTHVQASATPWSYGPFQNLQIDFIDLPPSKGFKHVLVVICHFSGWIEAYP
TRRADAVSVAKKLMTELIPRFGVPLTVDSDQGPHFISQIQKALSKALGFTWKFHTPYHPASSGKVERLNRDIKTKLPKLC
KQTGLSWPDILPIALMHLRNMPNRKHGLTPYEILFGRPMNVGLRPINEQKAASLLEGHENVLNYCRGLMKTAKALFPQVS
AALPVPTDVPCHSLSPGDWVLVKEFHRKNCLQPRWNGPYQVLLTTNTAVKVDGKSAWIHASHCRRTLTPKEEEQIDPEPT
QLDLNPTPTGTGFDEEEGLPMMFLIVGSVDLPPSKGFKHVLVVICHFSGWIEAYPTGRADAVSVAKKLMTELIPRFGIPL
TVDSDQGPHFISQRVLSKALGFTWKFHTPYHPASSGEVERLNRDIKSKLPKLCKQTGLSWPDILPITLMHLRNMPNRKHG
LTPYEILFGRPMNVGLHPINEQKAASLLEGHENVLNYCRGLMKTAKALFPQVSAALPVPTDVPCHSLSPGDWILVKEFHR
KNCLQPRWNGPYQVLLTTNTAVKVDGKSAWIHASHCRRTLTPKEVEQIDPEPTQLDLNPTPTGTGFDEEEGLPDVSAEAA
HRVEPPHTYNLRPKKKTKYNDFSKRNLPYGEASDNVIQKNCLQRQAKQYLPTEFNIMKLLMLMLVVLAMANANVYLQFLK
RVTLALNVSDCWVCGLIPRTNDEGFLMIPRPLTLLNLTVRWADPNNATWNDAKYLKVTPQQGEMCWVRNYSQQRNYSVGH
SNCNHYDMGNGVWMNNHTKDRTWCKSFKSWYNPYDQSTTGLAEPARYPANQ
>ERV4_DR_pol#LTR/ERV1 1767-5357 [Danio rerio]
GSPQSPEPPNATMLSTSIISVKGQEPATLPVEVQGKMYTFLLDSGATRSSFGGQYEGPICASTVDSVGIDGVPFKTSLTP
PLLVKVGNTRTMVQFAFMPSCSYNLMGRDLMSALGVTMTFKHDQLVVHTTDSAEPCLGPLNGLPFFLHDNLTVTDQEALS
SLPPHLWATHKDDTGLVVCPPYEATLKHNVPVSIKQYPLGEEKASAIDSIIASFLKQGVLRPCQSPYNTPVNPVPKPNGS
WRFTQDLRKINEAVIPITPVVPDVPTIMSSINCIHDTFSVVDLCSAFFSIPVEEQTQPLFAFTHRGIQYTWTRLPQGYVD
SPAYFSAVVHDCLQSLNMPEGAAVHQYADDLLVTAQNYDTCKHATMLLLNHLAHCGFRVSKEKLQFCQDKVIYLGHHLSK
GQRSLTTDRITSIATHPIPKTRQQLLSFLGLVNYCRQWIPDCSHYDHILRSCVEHKEPLTSPVIWTDEARAAFHALKKAI
CSVPALGLPNYDLPFHLYVHNDDRTIAGVLAQQHGGGMRPVAYLSKTLDIVARGLPRCLQAIAACAVMVQDAEKIVLSHP
LILHSPHQVTHVLNNLNTQHLSAQRRAGYEHVLTSTANLTVKSLTGHSHIAAALHHMLSPFDDELLVEQHDCLEEINAVC
SIRSDLAERPLQHGEVIFVDGSCSKPQDGVYLCGYAVCALPDQVIEARPLPFKSAQAAELYALTRACILYADKPVTIYTD
SRYAFGVAHDFGAIWQSRGFIAADGRPVSHHTLITDLITACHLPSQLAIVKTQGHSKEHTDEAKGNALADRHAKLAAQQP
LPEDSMHVSLLSTTSASGMLPDIDLAMLQASATDEDKSFWDAFSSTFDEKMGLWHDNTGRLCLPHVALSFLVHEFHGVTH
RGRRGVHETMRSLFCVPKLETTINNILDKCLICAQYNVSKPVAQHQHLPRPITPFSEWQVDFTHMPKRGPFKYLLVCVDK
FSKWVEAFPCSRENAKVVTQKLISEIIPRYGIPQSIDSDKGTPFTSKVTQQLATELNINWRFHIPYHPQSSGFVERTNRT
LKGKIKKALRQHGHKDWVKILPIVLADLRMTPQANLDSLSPYEVVMGRPFPIPWQGGIMGVGIELSNHISEFSAALIQKL
NQYWERVTKKHPEIPLEAAHPFQIGDKVLIKDIKPQKDLTDPKYEGPAEVLAVTRTAVLTDLFPQWIHGTRVKPLK
>ERV3_DR_gag#LTR/ERV1 890-2661 (1 stopcodon) [Danio rerio]
MILTATTISIIPLLAFLGGFRLFSSNFFKLLTKRMADLFSLMTQSSKGIKMDESYLCKQICLEGLKSKKYSEIVKRMVSL
GYESKWKLTEQTEWLQNTKEADKYKFLAVCACSWISQQGGIFVDNDGDIPDMSSAWKNLMSNIDKVSEISGIDVGTDLSG
LGKALSAIAEQAxECGECTNNFNETKPSAPECFSSNRQVAVVSSPIQKQETQSDSPYAQVRELLNVLTSGAPAPPPYANS
GEFPSLQERVDRYGVVKTFLHPHSKRSITFSKKGASAAPIRIATDVHRNTEMGAGYEIGEWVRLTPGEKSHILAGMEPLK
LSYPNKTTWDKIEAAARQQNLGIADIQSIVESLVPVSKLPKIQTIQYDPRVPDEWVGYCHAYKEYKDQVQEVLGRGAFPW
TSVTQIKQRPGESPVEYLDRFRTAFETHCAVNNCEAEFDKPFVLESAANGLTKQYRDLALTGCAEFLTWDDLARWSTMCW
GRLQESEGHTGLTPPTVNVGAVAAADDTKRLSLAEIECYQCGNLGHLGRTCRNGTKSCNKCGKPGHASKFCKADLNPSQR
RKGKNEKPQNKPILSESAIAKLLKLVGED
>ERV1-5_XT_pol#LTR/ERV1 2131-5538  [Xenopus (silurana) tropicalis]
MVSDIPLIIPGFLKTKIDIWYCKGVDSILATDVMEKRGWIVDLGNRAIWKDAKGKNPVLIDPADFEHVKAICPVNVSADE
FMWPDTGSNLALKELVQRFPGLWAQGKNECGRLKDVLVDIKGPDPPPQRQYRLPPESLDSIAKVISDLEAAGVVRKTNSK
CNNPLWPVKKQDGSWRLTIDLRVLNKYTPPSAPIVADIPDIMSKLMANAKFYSKIDIANGYFSIGLTESCQYKFAFTFQN
QQYKFLVLPQGLHSSPTWFHRALADVLATFSRPECLLQYVDDILLQTVTEEEHLILLAELFELIYNSGFKMNTRKVVFLK
PEVEYLGVQIGPGYRKPLQERMKAISVLPVPATQKALRKFLGFVNFSRDFIESFAEKARPLYDLLKGSESEFGPWTQDHQ
LAFETLKKELQMAPSLATIDQSAPFALQVHTSEAAVSAVLLQLQGGVWRPVGYFSKVLSPVEKGFDVCTRHLLGVHFAVL
ASEHIVGFNEICLQTPHTPLKLLLEKGISGVSPQRFSHWLVTLSTKPIKIDQKAKYVLPQLMQYEGHSHECEVNVEDAYP
VLFRREANELDEPVFVDGSRFFSEGKYYTGYSIWYPNRNVSVKHKLPGHYSAQRAEIEAVKTVLTNEGNERKHPLVIYSD
SSYVVRSLTDYLVVWQRRGFVDASNKILTQKETLEAVFDLATQTPALHAVVKVPAHRKGEDPISAGNAMADALAKEAALT
GDMVIPSEAKIMLPVRKTDTQLPSFSEEQAKDQNLVDLRVNLTFPFVHENGVLCYDLDGKLRPVVPEHLQVPFTKYNHES
LGHIGQQRLYEVLQDKFYWKKMKDTVEQVVSSCLICAQVNPCPKGQKVPLQHLAPADGPWSALQIDYIGPLQSGRYGLKY
ALVVVDIFSKWVEVIPVKRDDALTTAKVLWEHIFSRWGFPQILESDRGTHFTGQVMQATCAILGIKQRFHFVYHPISAGI
VERMNRTLKSRISKMLLDKGNTWVEALPAVLMSIRGTTSSATQYTPFELMTGRKMCLTFPGEPKLSTPQKDAIAKSQWLQ
LLQSNLETILPHAASKMQKMTPPDFSKFKKGGMVMIKTFRKIGSWQSNWEGPFNILNTMGQVMVQVQRPPDSKHNKRRQQ
VFWVHADQFKLYVPTQ
>ERV1-3B_AMi-I_1p#LTR/ERV1 922..2112[Crocodylidae]
SHLNCSPPGRQGTREILERHHPDRLPGTPESRIWRWIKRSLSRPLPSTFTPIANRTQQRVPDPSLLAPLREYPVPGEGGE
VVSHWTHTPFTTTDLLNWQENTPRLRDDPEIVLRRFKTIFMTHXPSWSDVMQLLESLLTSDEKTQVLRHADQFLADQQHQ
NHPMPNGVPRQDPNWNYNXEGGQNAIRMLKESILEGLKKAGDKTTNWSKVTATVQGPEEHPSDYFERLCKAMRQYGNMDP
ESPATLPVLRLVFISQASEDIRKKLQHNTEGVEGKSMAEILAIATKTFNGREEKKKKEKQKEDQSNIRMLAAVIQPPNPY
RTSLPRGPRPFAPRPPGRTHQPYGPNVCHYCKQEGHWKRECKLRPKRSPSDNPENQKFKNPPFATVTPDFAQDQFDD
>ERV1-2_Gav_pol#LTR/ERV1 1821-5477 via tfasty with MdoERV3_pol, 2 stopcodons. [Crocodylidae]
DARFPTIPLKIGEETFELLVDTGATHSAIPEGAAPRGSIEKCVMGVTGKTEQCFMTSNCTATLGPLNIQHSFLLMNGPVN
LLGRDLLCKLHAQIFCNPDGILLRFPLEKAYLLAGLEVQKAGKNLPVRVQNEVNPIVWGRKHAVGLVKSASPLNPTVKSD
QPPPAQRQYPLKPEAIQGLEPLIQDLKEKGILVPCVSPCNTPILAIKKPQPGPDGKPVYRMVQDLRLINQYVIPEHPVVP
NPSTILAMVPPDAKWFTCLDLANAFFSVPVAPEKQYLFAFTWGIPGTAGQRGERQKIPPPGQLTWTRMPQGYVEAPGVFA
KILAKDLKDVQLPRGSTLVTYVDDILVASNTRENNETDSIYLLNQLAMKGHKVNPDKLQWARQEVKYLGCTLGPGTRRLD
PKRVKAILDIPFPITKRGMRGFIRMIGFCRSWIVAAGELLKPLHDLTKDEAEEPLHPNAEQLKVFKALKESLVQAPALGL
PNYNKPFDLYVHESKGVASGVLTQLFGNSPRPVAYLSGQLDPVARGHPGCLRNVAAAALIVEKAQEIVLGHPLTVHTPHA
VASLLNSQQHKHLTNQRLSKYKIALLMTHGVTLKRCATLNPASLMPQEKGSGYVHDCLQVLDLISTHPDLTDVPLQNPEI
ELFVDGSAFVREGIRHSGYAVTNSETVLIGEALSPGVSAQAAELKALTAACLYAKGKRVNIYTDSKYAFGVCHATGAIxK
ERGFITSSGAQIAHGKEIAELLQAIQAPKEIAVIHCKAHTKQTDPVAMGNSLADRAAKAAALQGAQLDLISPLAQWQLQA
SDTERATWEKWGAQPNPVGIWECDGRPILPRSNQHEVLQKVHNNTHLGANKIVQVILRQFVSPELSEMARRVVKSCILCQ
QCNPKGTCQQAPPGGRRWAHRPMQHIQIDFTELPPSEGKKHLLVIVDQLSGxVEAFPTTQATAKAVCKVLLNEIMPRFGP
PEKIDSDQGTHFTAKICKELTEAVGTKWVFHAPWHPQSSGQVERMNGTLKATLTKLCKELRMKWTQVLPLALYIVWTTPN
SKTRLAPFEILFGHVPPSFTSLISIPSDTDLTCETEAYVKALQQHLATLQQYSAQSQSLPLWEAVHSISPGDPVWIKTYQ
KTPLQPQWLGPFETILVSPTAIQVKELPTWVHHTRVKKSLAREPDLVKGSPEADGVRLRGSHACSPHREPGEPEADDLRI
QGKWTATPLGGLKLKLKKT
>ERV1-4_Crp-I_3p#LTR/ERV1 4087..6243[Crocodylidae]
MSPCCSCSAITVELSSTLVLGSPLTVAVPHAVAALLLKTKTQHLSNARLTKYEILLLSAGNVTLTRCPVLNPASLLPTPS
DGEPHDCISVTAHLTMPRTDLKDNPLQNPDLVFYVDGSCQRNSKGSLVAGYAVCSQYDVIESHHLPDVHSAQVAELVALT
RACTLASGASVNIYTDSRYAFGIVHDYGQLWKQRGFLTSGGAKISNGPYVNALLNALQLPSAVAIIKCQAHQKPYDDVTR
GNALADSAAKAAAISTPQATPVFLSIPTDQSPLASLHDVALLQDQAPEPEKRTWRLAGCLLHPDHLWRSPDGRLVAPMVL
LPHLARIHHGMAHVSKGGMIEAVKLDWFAPTFPSVAQQYCHACPICQAHNVGKPVKTKXAAHPPPWGPFVNLQLDFIQMQ
KCCSYEYVLVIVCMFSGWVEAYPCAKADTITVSKKLLRDFIPRFGIPLSLNSDRGTHFTGQIMKEVCKVLQIQQNFHCPY
HPQASGQVERQNGILKNKLAKICAETHLKWPDALPIALMSMRSTANRKTGLSPHEILMGRPMRLPASPPVASHFCDIHSL
DDTILDYCKALMKCVKAFHSQVQAALPKEPDEPCHSILPGDWVHIKVHQRKSSLEPRWKGPFQVLLTTNTAIKCQGLQTW
IHASHSKKTSAPLDPESPPYQFCNQPPQTGSEPSACQQESSRPVVSQAPTGEEDLPLQSEEDVPQRHHYALRDRKKAST
>ERV1-5_Crp-I_2p#LTR/ERV1 5985..6671[Crocodylidae]
MYFLCRGKAYLWLPRNWTGRCGLSFLVPGVRILSHLPARVQPRSIDXTSLPYINDVSGIFGSAFPWYGAAKALRAINSVT
LFLQAFVNESVGALKDISLELYSLRQVALQNRMALDYLLADRGGTCAVIGTECCTWIPDKSESLHAHIDSIQRAWTTFEQ
TKDSDSSSLWTWVTSWLPDFSLIAKRILCVFILVIVIFVVLFVSLQCVCMCCKTIINVVRGYSYSSVPV
>ERV1-4_XT_env#LTR/ERV1 5739-7292  [Xenopus (silurana) tropicalis]
MNIINMYDIFIKDKINSFWKRNTGQVNNKLNPLMNTHRRFSKRDIGGIIGTVSGLFGSGMSIWNRADISSLWDNEQKLKI
LMGNKITKPLASSQLGLENEELATVYDMHVIAKLFLQMQDKLNELISVNNEDATNNKLGREMACIAYGDFILSKISDMLR
DIELQRIFDFIPDTRIRGWYGKLETGVTMCTIRDLAKVTLHAIKCDDTLSTMIPLTISLPVIPTNGIYRDLAKIHSLGIL
EESVLKEFKRPPTLLVKHPSGDWQSPDTSCCLKEKDIYICRCNILDLAGDTCGLTLNQTFRTEEKMKVEETITTCAVKLT
RWHQDMIKTAYVGDGKYCIIAKGHNIFYGGNECTLSSPNFCLTVKEKMEINGHTIIPVPVYHDTSEVQVKLRYQEEIKNL
VPQLHVPIPTLSLDVHKLMERTPEHLLQMKQSTKNAMDSVLQLTTTKWWDSMDNVSEHPIFRLSFKMLICIQGILVICGL
LLFCKMTRTIKNLERFTYGQVQERGIISHKLHSPSRWG
>ERV5_DR_env#LTR/ERV1 7274-9217 [Danio rerio]
XQVSQKTTQKETMMYKMWQKEVNRSIKLITLIICLNMIKMQQIEGMENITTADPKTQAFNHTYQAVNNXMSSESNNSNNT
TIPPQDNITLGYMSQTFNDTPISTTIQSFLELNSNSSLIEGGGKQRRNVDSILEDNIKLDELWEMAQSNQWFEWATYTTA
EIKKKDCLFCTKTPMSQVVVVPNPFTYEHCAQFNRDFCHMENDWRLFCPAECLGYLSHSKHHLLFKHVARLRAKCRSFGI
SDKLKIQNGPVEIPLWYTIDYSKEYECFVKPIGTVNVGQFKGKCGITWNLDTKKVRNYDDSRDFPPFRGTGTHKGKIITP
AENCENQTIALPDIDRYKDQTLPLADFFWVCGNRKLLSSLPLGWRGKCTRVRLVQEVQIVEWDLETTFGNNNTVNYRIKR
SYSPDPQVYIDAIGQPRGIPNQFKARDEVKSGLESILLWISPNKNTEWINYIYYNQQRFINYTNEALISLGEQLDATSKM
TWQNRLALNWILADKSGVCVFFGSLCCTYIPNNTAPEGTFTKAMTKLKQLQEEMATNAGKDEKMWDWFDLKLGAWGARLA
KMGIFLGVAVGMGGLLLCCIFPILRSLVIKATAKQMSIMQYQESEKIMLEINQKGLPQKWAFQPNLDSKTVTSDEYSDSS
DEEEDDE
>HERV17_gag#LTR/ERV1 1914-3143 HERV30_gag really close [Primates]
MTRGAGIPMFFFQMGNVPPKAKTPLRCILENWDQFDPQTLRKKRLIFFCSTAWPRYPLQGGETWPPEGSINYNTILQLDL
FCRKEGKWSEVPYVQTFFSLRDNSQLCKKCDLCPTGSPQSLPPYPSVPPTPSPTNKDPPSTQTVQKEIDKGVNNEPKSAN
IPRLCPLQAVGGGEFGPARVHVPFSLSDLKQIKIDLGKFSDNPDGYIDVLQGLGQSFDLTWRDIMLLLNQTLTPNERSAA
ITAAREFGDLWYLSQVNDRMTTEERERFPTGQQAVPSVDPHWDTESEHGDWCRRHLLTCVLEGLRKTRKKPMNYSMMSTI
TQGKEENPTAFLERLREALRKHTSLSPDSIEGQLILKDKFITQSAADIRKKLQKSALGPEQNLETLLNLATSVFYNRDQE
EQAERDKRD
>HERV9_pol#LTR/ERV1 2748-6320 (1 stopcodon) (HERV30 close) [Hominoidea]
GCPGQAPAHVITLTEPRVRLTIEGQEIDFLLDTGAAFSVLISCPGRLSSRSVTIRGILGQPVTRYFSHLLSCNWETLLFS
HAFLVMPESPTPLLGRDILAKAGAIIYMNMGNKLPICCPLLEEGINPEVWALEGQFGRAKNAHPVQIRLKDPTTFPYQRQ
YPLRPEAHKGLQDIVKHLKAQGLVRKCSSPCNTPILGVQKPNGQWRLVQDLRLINEAVIPLYPVVPNPYTLLSQIPEEAE
WFTVLDLKDAFFCIPLHSDSQFLFAFEDPTDHTSQLTWTVLPQGFRDSPHLFGQALAQDLGHFSSPGTLVLQYVDDLLLA
TSSEASCQQATLDLLNFLANQGYKASRSKAQLCLQQVKYLGLILARGTRALSKExIQPILAYPRPKTLKQLRGFLGITGF
CRLWIPGYSEIARPLYTLIKETQRANTHLVEWEPGAETAFKTLKQALVQAPALSLPTGQNFSLYVTERAGIALGVLTQTR
GTTPQPVAYLSKEIDVVAKGWPHCLXVVAAVAILVSEAIKIIQGKDLTVWTTHDVNGILGAKGSLWLSDNRLLRYQALLL
EGPVLQIRTCVALNPATFLPEDGEPIEHDCQQIIVQTYATRDDLLEVPLANPDLNLYTDGSSFVENGIRRAGYAIVSDVT
VLESKPLPPGTSAQLAELVALTRALELGKGKRINVYTDSKYAYLILHAHAAIWKEREFLTSGGTPIKYHKEIMELLHAVQ
KPKEVAVLHCQSHQKGEGEKAEGNCRADAEAKIAARRNLPLEIPMEGPLVWNNPLQEIKPQYSPTETEWGLSRGHSFLPS
GWLMTEEGKVLIPEASQWKILKTLHQTFHMGIENTHQMAKSLFTGPNLLRTIRQVVKACEVCQRNNPLVHRKAPLGEQRI
GHYPGEDWQLDFTHMPKSKGFQYLLVCVDTFTNWIEAFPCKTEKAQEVIKVLIHEIIPRFGLPQSLQSDNGPAFKATITQ
GISRALGIQYHLHCAWRPQSSGKVEKANETLKRHLRKLTQETHLPWPTLLPMALLRIRNSPHKMGLSPYEMLYGRPFLTN
DLLLDQEMANLVKDITSLAKYQQNLKNLPEGCHREKGTELFQPGDLVLVKSLPSTSPSMDSLWEGPYSVILSTPTAVKVA
GVESWIHHTRVKFWTPPEEPAGPSAQESQDQPDQPRYTCEPLEDLHLLFRKETSQTKKAPTTDPEEKPLPP
>HERVH_env#LTR/ERV1 5969-7710 via tfasty with HERV9_env, 1 frameshift and 9 stopcodons.  [Primates]
IPPxxTTAGFAFPFLPVLYIAVPALQTDWATSPVSLHLxTSFNSPHLYPPKELIYFLDRSSKTFPDISHQQAAALLRTYL
KNLSPYINSTPPIFGPLTTQTIIPVAAPLCISWQRPTGIPLGNISPSxCSFTLYLQSPTTHITETIGAFQLHITDKPSVN
TDKLKNISSNCCLGRHLPCISLHPWLPSPCSSDSPPRPSSCLLIPSPQNNSERLLIDNQRFLVHHENxTSSSMQLPHQSP
LQPLTAAALAGSLGVWVQDTPFSTPFHFFTLHLQFCLTQGLFFLCGSSTYMCLPANWTGTCTLVFLTPKIQFASGTEELP
VPLMTLTxQKRVIPLITLMVGLGLSASTVALGTGIAVISTSVTTFRSLSNDFSASITDVPQTLSVLQAKVDSLAAVVLQN
RxGLDLLTAEKGGLCIFLNEDCCFYLKQPGLVYDNIKKLKERDQKLANQASNYAESPWALSNCMSWVLPILSPLIPIFLL
LLFGPCIFHLVSQFIQNCIQAITNHFIRQMFLLTTPQYHPLPQDLPSAxSLPLxVPMPPLIPLEAALRNITHSLSPYHPP
KIFTAPTLQHYFIFLINIRRQ
>HERVP71A_gag#LTR/ERV1 461-2017 [Primates]
MGNRNSRPRGQRKEGAKETPSDIPPDSPLGRMLQVWRDNPRTRDKEKQKMIKYCCFIWPKDPIRKPSVFWPKFGSDEDWV
CQALILYVNDKTPSSQEEIGYALCWIKELAPMFPLKEEEKEPSKKPSPSEKPWDPLSCLPPPYVSQNRGQEDQGAAGGLE
EERPGDHGGAEPTAPLNPYPNLRKELEQCKRDIENFPIPSTQQASSMFPLREVPMGQGEIGFVNAPLTSTEVRNFKKEMK
PLLEDPLGLADQLDQFLGPSFYTWAEMMSIMNILFTGEERGMIRRAAMTIWERQHPPGQGVLPAKQKFPNVDPEWDNNDP
RDRAQMQDLRELIIKGIKESTPRTQNVSKAFEIQQEKEETPSAFLQRLRDQMRKYSGLDPEDPVGQGLLKVNFVTKSWPD
ITKKLQKIDGWNEKPIEELLREAQKVFVRREEEKQKQKAKIMVSTVEEVVRKRLDQDPPRRRQGNDRFRHRERREMQGKA
PKTMSGCYKCGKPGHFKRECPEWKKEEKVIPLMTIDED
>HERVIP10F_pol#LTR/ERV1 2220-5723 [Primates]
GGQGLCLFYLESHQEPLINLEVGPKHELITFLVDSGAARSSVCFPPSNVVSSSEELLVSGVKGEGFRAKILESTEVRYQD
RSAHIQFLLIPEAGTNLLGRDLMLKLGIGLQVSPRGFLTSLNLLTTADEKYINPNVWSKEGNRGKLQVPPIHIKLKTPGE
VVRRKQYPIPLEGRIGLKPIIEGLIKDGLLEPCMSPYNTPILPVKKSDGSYRLVQDLRAINQIVQTTHPVVPNPYTILSK
IPYNHQWFTVIDLKDAFWACPLAEDSRDIFAFEWEDPHSGRKQQYRWTVLPQGFTDSPNLFGQILEQVLEKVVIPEQICL
LQYVDDILISGEDIEKVTDFSTHILNHLQFEGLRVSKRKLQYVEPEVKYLGHLISAGKRRIGPERIEGIVSLPLPQTKQE
LRKFLGLVGYCRLWIDSYALHSKLLYQKLAQEKPNRLLWTSEEVDQVEKLKERLITAPVLALPSLEKPFHLFVNVDSGVA
LGVLTQEHRGRRQPVAFLSKVLDPVTCGWPQCIQSIAATAILVEESRKLTFGGKLTVSTPHQVRTILNQRAGRWLTDSRI
LKYEAILLEKDDLTLTTDNSLNPAGFLTGNPNLRREHTCLDLIDYHTKVRPDLGETPFWTGRHLFIDGSSRVIEGKRHNG
YSVIDGETLVEIESGKLPNSWSAQTCELFALSQALKYLQNQEGTIYTDSRYAFGVAHTFGKIWTERGLINSKGQDLVHKE
LITQVLNNLQLPEEIAIVHVPGHQKSLSFESRGNNLADQVAKQAAVSSEMRIFHLTPYLPPPTIIPIFSSTEKEKLIKIG
AKENSEGKWILPDQREMLSKPLMREVLSQLHQGTHWGPQAMCDAVLRVYGCIGIYTLAKQVTDSCLVCKKTNRHTIKRLP
LGGRNPGLRPFQSIQVDYTEMPPIGRLKYLLVIVDHLTHWVEAIPFSNATANNVVKALIENIVPRFGLIENIDSDNGTHF
TTHIIKKLSQTLDIRWEHHTPWHPPSSGRVERMNQTLKNHLTKLVLETRLPWTKCLPIALLRIRTAPRKDIGLSPYEMLY
GLPYLHSTADIPTFETKDQFLKNYILGLSSTFSSLKTKGLLAQAPPLEFPVHQHQPGDHVLIKSWKEEKLEPAWEGPYLV
LLTTETTVRTAERGWTHHTRVKKAPPPPESWAIVPGENPTKLKLRRI
>HERV9_env#LTR/ERV1 6716-8380 [Hominoidea]
TSPILPWQMTVGFVSLYQPLLMLPLPFPQKNWVFTNLTYHPRYEGKDPFRLLNMQSLADFPISDRTKNTLTGRAIQLLRS
YISNLTYYTSNEKPIHGPVTMNTILTFQAPLCIQRNLLSGLPLGHLLPHQCNYTLQLQAPTDHSNFRVTQTAPFRWLVCF
SGPPKIITSSLLNKQSRFCNGKHTPCMTIHPWTPCSSAPTTSECLLIPSFNHSLEWFLVDTKWFFLQWENRTQGATQFAP
NTPFQPLTGATLASTLGVWENENNKLTHLFNIHNQFCLPSQGIFFLCGTSTYICLPTNWTGTCTLVFLSPNINIAPGNQT
LSVPLKAQVRQRRAIQLIPLLIGLGMATATGTGIASLSTSLSYYHTLSKDFSDSLQEITKSILTLQSQIDSLAAVTLQNR
RGLDLLTAEKGGLCTFLGEECCFYTNQSGIVRDAARRLQEKASEIRQCLSNSYTNLWSWATWLLPFLGPVAAILLLLAFG
PCIFNLLVKFVSSRIEAIKLQMVLQMEPQMSSTNNFYRGPLDRPAGPFTGLESSPLEDTTTAGPLLRPYPAGSS
>ERV-1_Crp-I_2p#LTR/ERV1 6111..7403[Crocodylidae]
MSRLYSANIEVLANKLSYATENMGKMGTPLTASLKMLSEEQQLISKVFPGWEGLIEGDEKLMMSGVQSLQNNVSLALACE
QAQALTQNVIMGMIRQAMMGQIPMEAINLIRPHATEEELALQPWWRLVNASYNHHQQSLQLFLITVAGKEIRTIHPVVPL
GLQIDDSSVMYSRDHNTWAWQKDNAWKTVNVKGCRRKEGLGYICEDQALEEHDECFFPQPGNKSHCSFDVIQERESAIVY
VGKACVCMRTRCDIVLINGYWIQPMVPYINRCFCNVTTIVTCDLKFTVPVWTIQHLNAYPELYKEVSPILLGMGLITIKN
LLTHPSLQAELQRLKTLGENGKLEIQHRNQEISKLAATVKNAGHHSWWEVLFGWSPNATGLLNVMLHPIVVIISFQIILV
IGLMLLVCWIQRLMRRLQWIEDQNQYHGAKM
>ERV6_MD_gag#LTR/ERV1 356-1948 [Didelphidae]
MSGDMVIDVLMVLWECILHIPYIVFVLFPNVCYVGLDYRWMKPFMDITMQTVLSHVPIVCICLCVLYKCRLAFFLIGKWF
KVIMIWLTKDSELKLMVIHMKKQLDQMELYIKDNKFINTEYGCGENVNTGAKENLNRLQQEEARGMVTLCPLRDLPVVSK
NEIFQVKTHKRFTPEDLESIKKRTPAFVDEPNCVIKEMKRAIDIFDPDYNDFALLMKELLTKRECNKFIEETRSDPLLVP
WPERYDMDMNDRAQYDVMKECRQAILEVMGRYTKRPNAWSKFEGIKQKPTETPTSFLDRITEAAETYLNMDVLEEGTISH
IKRVFVKNAIPKIKLFFKNNYPDWEEMELEDIRQKATYLTMDNDGKYEDRDTEMEDLKRKLREAELKAKESEIKEVKAVA
ALRSIKPNNNNYYKPRDRRSGPQCCFLCNRVGHFVKECRFRGQFARQMNRYGGYNRNNNWNNNNNNYNNNNNGWNNNYAR
RNNGNVCQNACCQGPQAPDLNTMQDWVKSGARPKYSQVVKGDQSKGACSL
>ERV-3_AMi-I_3p#LTR/ERV1 6550..8577[Crocodylidae]
MPGWMRDGLTGCTGHSRAFRLIHSPRPTPAPTVSTTIPSPPPPPPCSCIAWNLSSPLPAGEHTIQACWGSXSTSPDVPAR
MTISSPQGQLAVNFTHPKSEPIDFTLNATSCPEECPLSSCGTLVYDFSLSSSGLWEASTSKDSPTLATEIIIHDKAERHE
IGPFVVKQDISKPLLTNMTQSLWNVTINLQSHSITQLYPQCANYVIPLSAGWQAWTQQVTYEPSNSSGSSGPRRRRSLDT
VLGAIGTGTGVLNTMNTEVLQNRLATVGNLLHHLDGPTRDNFETSIQLSVSIASLMQWMTQVASQDSHTLTEAIIALGQN
TSLALMCTQAQVWYLDVIKGIILQGLKGHIPLELQNLLRKETRQSPQLTPYNRLIQFGFDPNLWSINLIIMGVVSGKINQ
VFPIITLGSQINDTFMIPQTGKHWALKQPNGQFKAIAVNNCEDAGSGFLCEELMLQSQTLCFDPDFSICPYVMFKDPSAQ
SLLVSIGFGCVCLRTLCQSITVNEFYNITGLQHNLCLCNVRSITGCDIQYRKRTMLHQSITPQYSLLKSKLTPVHLGISP
QALRHATTHPELQQALQALQSQANKTYTIIQTNNHQVTQVLTKIKEVTQYSPWETLLGWSPTATGILNLMMHPIVILFTL
MIILTFLTIFLYCKLIATLRTVHAKIDEAKALGRIL
>HERV3_pol#LTR/ERV1 2435-6053 via tfasty with CfERVF1_pol, 3 frameshifts and 2 stopcodons.  [Primates]
LGPQEPMVTVEVGGQLMDFMVDTGAEHSVVXRPIGPLSKNYTTIVGATGVPEKRPFCRPRRCVIGGQEVQHEFLYLPNCP
VPLLGRDLLQKLQAQIAFGPQGDMTLNLTHPKAMVLTLTVPQAEEWRLYAKESPEPGXNEXYGLLSKIPGVWAEDNPPGL
AVNQAPVVVELKPGATPVRVRQYPLLREAIRGIHKHLXWLFKHRILVRCQSPWNTPLLPVRKPGSGEYRPVQDLRAINQA
XVTIHPVVPNPYTLMGLIPASAAWFTXLDLKDXFFCLRLAPISQPIFAFQWDDxVTGTGEQLTWTRLPQGFKNSPTIFEE
ALASDLKAYTPPNDNCALXXYVDDLLLAAPTREDCYQGTQDLLHLLWKAGYKVFRKKAQICXEXVKYLGFIVSQGERRLG
SERKQAVCALPTPTTRCQIREFLGAAGFCRIWIPNFSLMAKPLYEATKRGERKPLLWEADQEKAFKQIKEALTQAPALGL
PDITKPFFLYVHERKGMAIGVLTQVIGSWHRPVAYLSKQLDSVXLGWPPCLRALAXTALLAQEANKLTLGQQLTIRSIPH
SVITLMDQRGHHWLSNPRMTRYQGLLCENPHITLETVNTLNPATLLPIEPGAPLHDCVETVDEVFSSRGDLTDRPLGDPD
VEYFTDGSSFILEGVRxAGYAVVTLDSVVEAQPLPTGTSAQKAELIALTRALLLAKDKKVNIYTDSKYAFATLHVHGAIY
KERGLLTAEGKKIKYKEEILQLLDAVWAPKKVAVMHCRGHQKAGTLEAKGNRKADREAKRAAMTTPHSKKEALAMPLLPX
PPLPEIPSYSPNEKAWFAQESGKYIEGGWWKFSDGRLAIPEMVAPKFVKQFHQGTHMGKTALETLLGRHFYVPRLTAITR
AVCKQCLTCAQNNPRQGPTWPPGNSGNGSQPCENLLMDFTEXPRAGGYQYMLVLVCTFSGWVEAFPTRTEKAREVTKVLL
RDVIPRFGLPLTLGSDNGLAFVAEIVQELTRLLKIKWKLHTAYRLQSSGKVERMNWTLKQLLKKXCQETHLRWDQVLPMV
LLRVRCTPTKQTGYSPYEILFGRPPPIIGQIKGDLRELGELTLRRQMQALGIAMQXVHGWVRERMPISLTDPAHPFKPGD
SVWVKKWNPTTLGPIWDGPHTVILSTPTAVKVAGIVPWIHHSRLKPAARDKWTSQQDPDHPSRLILRRDRVATERRRQPC
SGHSGS
>FERV-R1_gag#LTR/ERV1 2019-7658 (split gag and pol) [Takifugu]
MEKRETGGGMTLRQRMEKKDQSRGTASARCAQDVPLVAKGAQNDYRYVPWSFMDMITLAGKLTPLAEGADKWIEKLEEIT
GGINLAGGDIKALLIKTAGQTATAEIFRAAGYRGMTVTHQHDEVSFDQMRTGVWKALREKYPSRMDPTKLEKESLKEEDS
PSQFLHSYQKMWKTETGSEWDSTETTKALFMMYIKNAMPKEVQDKLNGVVGLMKMTWPVFSEHIIHYVNAYRAEKQALED
QNKILANKLTQLQIGELAKQKKDREKPRPQAAVRAADPEPEKGPTVERVTQAPIVTPVMSPPPASQATPAVPQAAPAVAP
AGQLQTQXMPPIHVHLNQGGGIQRPAAGGGRGGPPVRGRWRRPQGPRRYQQSQGPPPGQGRAPXQYRAELRCWGCGQVGH
XQRECPASPWTGPQNPGQGPPHPGTVPAVPANGLWMGPAAYWQWGCPEKPEGKGI
>XP_488159_gag#LTR/ERVK gi|51764711|ref|XP_488159.1| similar to protease [Mus musculus]
MVFVDNGMMGFSEMRASVFAAVLLGRKDRRTVVGRRARRTTGCGPGGRPGRRRSPPDPRITGPAGQVKWCQTWGTRYDHP
LDNGFERYRADSETVPRHFTRVSPTSRVSILEGLAGEGYLIPNEWNKVVQSVLPRGHYLTWKSEFVDRGENLAANNRKNP
ARKTASWTADKICSKGNFAADIKQLGLSPGVLTQMAQAALGAWCTVPAAGALTTPLTKIIQGPQESYVQFVARLQETAER
ILGPEESEGLLVGQLALENANSAYRAALRVQGNSQRAPLRGPSPLMTTADNLPCPHGRLCRATAGNAGLDLCFFTTRITT
PEEGTVVIETGEFGPPPQKTFFLVIGGVSRLLQGLTVTPTVVDTDYHGEIKILVTSMQGPLTLRAGERIVQALPLTLFGH
FPYMKEERGPSSPGSSEVYWAQKITDSQPMLTLFLEGKQFQGLLDTRADAKVISSTHWPAAWPLQPTATHLKGIGQTQDT
LQSSKLLTWSDKENNTGTVQPFVLKGLPVNLWGRT
>TvERVD_pol#LTR/ERVK gi|7107373|gb|AAF36395.1|AF224725_3 pol polyprotein [Trichosurus vulpecula]
PLRPWFPDTFFIRATGPLSLQADKITWRSETPVWIDQWPLPKEKLEAANMLVQQQLTAGHIEPSNSPWNTPIFVIKKKSG
AWRLLHDLRAVNKTMIPMGSLQPGLPAPVAIPAGFQKIVIDLKDCFFSIPLHPDDSKRFAFTVPVTNCVGPSPRFQWKVL
PQGMTNSPTLCQKYVAQTIDPFRLQFPQLYIIHYMDDILIAGPCEQELLRITTLLITALKDRGLYISPDKVQLASPFFFL
GFELHSSHIITQKAQIRTNHLHTLNDFQKLLGDINWLRPYLKITTGDLKPLFDILKGDSNPTSPRVLTKEGEAALQKINH
AISAQKIGYYNPQKKLWFLIFSTSFSPTGLLWQDLPLYWIHGPATPTKVLPTYPLLTASLLQEGRSLSVKFFGKDPDHIV
CPYTSSQLSWLQQNDDTWAISSVSYQGILDNHYPPDKLIQFLRDNPVAFPRITKRDPLENARLVFTDGSSSGTAAISIDS
NLTSFHTPYKSAQLVELAAILWVFEHVPDPMNIYTDSAYIAHSIPELETVPYIKPSTNAFSMFLQIQKLIRERAQPFFIC
HIRAHSDLPGPLAKGNDTVDAASKHLVFASVLQPSPIETAIKAHELHHLNAHSLSQIYKITREQARQIVKQCPGCLVLLP
EPHLGVNPRGLVPGELWQMDVTHFTPFGKLKYIHVSIDTFSGFLIATLQMGEATKHVINHIVASLAMGPKPKILKTDNGP
GYVSSSFKQFCAYMNIRNITGIPYNPQGQGIVERAHQTLKRMISKLQSGSEKLYIRANNHRTLLNHALFVLNFLTLDAHG
KSAADRLWHPSSAHDYAQVKWKDPLTHQWHGPDPVLIWGKGHACIYDSNAQNARWLPERLLKLVDHAIIKH
>CarERVR1_gag#LTR/ERVL 30-1541 [Carnivora]
MGLGKEASAGEIPGWPSTSXWGGVARMLDACGPPREYGDAPKMPAGLMRLFEELRIAHCGREGKRMAAAVGWPLLWAVRL
ATDAQLEAEARVRKLEEELRLEKDVWVSTTLLASGLADKVGEQDNKLETLACRFAKLGGRKLPRIKVRALVTKPDWDAKR
WNPWESXESEEEDVVVIDSEIDEMPHAVRPLIQRKAKAQQQQPQPAGQPPVQETFMMREYTPTELIDIAAKFQQKARESI
QAWLVWLWDTGGDGISLTRQEAEKMSNITTHPALRQRLHGAQGVQGTHSLIDWIILACREAWPNEGDLPGHVGPWKSIEE
VQQILRELGMRQAIYAPVFEGPDRATFTAGMKAKXLQSAPSTWYGTLISMLSPVVGQDIYDVGQSIADLGETDKSQEWVR
AVGKTRDREGARKAKRLSQLAIKGPVKVTRKQMWFDLIAAGTPPEQIDRQPNAVLVGLWKALKPEQQFRPVPSAPTIPDA
PPAPAEASGIQSYSGWVPPTPRV
>ERV1-5_AMi_pol#LTR/ERVL 3549-6532 via tfasty with GGERVL18_pol, 1 frameshift. [Crocodylidae]
GCPGPRDSGFGDQSESRFVSALGEPRSPLDNRPWGIVVTNKKDIPVLIDTGSQITILPIKIQPTGQTITCMGVTGSMKLP
QFQGNLLIAGEEKLCKYYYHPGKSGILGIDCMPANWLSSIECSILEDQGFTITLNKPGTVVYTKQFYLAPEKQNFIENWK
EDLLQNNVLEPCISKHNSPVFCVPKKDAKFRVVVDLRKVNMNTVFYSAAGQPDRGKMLTELRKELLNHSWIVVLDLADMF
YSIPLKDPKGITAITVGAQQYKFKVLPMGWHNSPAFAQQAIQNILRNYPGVFVYIDDIVILSPSKEQAEVRKLEIIQLLE
NKGFKVKPSKIQEPSQEGTILGTKLTPQSFSPNEQLVLKIQNFEVPQTLKQARGYLGLLNQLKTFVPGLASHLSPMRARV
RKNWKPTPEAQRKLEICVQNIKSLLEAPVRIHNPVPKEPIEIHLSHELENWAWMAKQRGQLVACNSGTYTSNELSIDLVT
LQFKTLLNALEAVELWNNPVVCYVSAGALTWLVDASIPIELIPVKQTVLLERCLTLLRNQISIRKEKGSLVEFQIKKAIK
PIMFYFEEKKQTDNPWLWSDGSKQGAQCKGAIYCEQCKASFETLPENGSAQKGELLGVKLALTHAEWKHPDDPVKLGIDS
MFVFTMATNLNDQNTQPLLEKGNRAHSEIWKDIMAIVAKLRSPIHIKHVSAHQKDTPEGHQRADQQASAWGAEIHPDDSK
EEIEIMQWHTALGHVSSKALYQIAVDNNILVTRQQIEKLVLKCEKCSKYKFIPSHKQQQLGVYDPQNFQANEVWQIDHIG
PLEGCKRYRYALTVVDLGTRKIAIVPQNKLTTAATKMAIQTVCGYWGNPKEIQSDNGSAFTSNKMQTWVTEQRPKVQWKF
HIPYHPQSAGVTERTNGIIKAQIKLLNQGKFTNWQIWVPQIMQSINNRGGTPKQNLRAIKWPEWKTGDPVLVKXPNNPEP
KPATVQVLLNPSMVKIKFHDGREYTVPISWCRSQK
>ERV1-5_AMi_gag#LTR/ERVL 2514-3545 [Crocodylidae]
MEDQQAIMRLEHKNQQLCSQLKSQEIKAEPPPPYNPDLDPVAASAPVRGIKTETPFVPDGVQAPEAPPPARYMVEERSFK
DSEIEERAKHCKRKTDEPPLTWVGRVAYSCSGDNFTKREFRTLLRKIRGGGSMLNLPDNPQWDRQALSPGIWLAICLSLE
GEPLSEGWRNTKENCCYSIIGLSAKAVRNEAQGRRDWAPDTGRVSQLPLACQLIKRHAPKQILLVHALSGLADDATLIEA
CRKIQDFFEEHPKRGQVNQVEVDQVTQSQQTNFCGRGGFRGISRGRGGGSGWTPRAINQLGSREGFRQSVWQWCQLNAPD
LIGPGKTTTQLVTEAYKRGWRPEN
>TguERVK5_pro#LTR/ERVK 2972-3838 [Estrildidae]
HRWQAFAVKLKKERGLPPRFDTSSGXSLQSITQSNGIGTSVIHTSVNHSSNGPSSIPSGTRFELASSKLIRLLNNFCYES
ISTGIINFFQQRQDFLILGKASNKILGLSVLPTVVSVNCNEELVILALALNVPMVIPPKTPIAIAFLLPMNTPKQNNFPE
NSIMSVPFSTSGPEVFWVQCVGRSQPKLTCSLTHRGKTIYITGMPDTGADVTVISHIFWPNDWDLVAPAGSLTGIGGATV
CLQSASMINITGPEGKTATVRPFVVQKPLTVWGRDVLSQWGAKLEVGL
>RNERVK22_pol#LTR/ERVK 3146-5956 RNERVK23 close [Rattus]
RTIGYDTEARSKRFGISAFTFSLAATVMPAPQAHTEIVSHAEKISWRDNVPVWVDQWPLTQEKLTAARQLVQEQLAAGHI
EPSSSPWNTPIFVIKKKSGKWRLLQDLRAVNKVMVPMGALQPGLPSPAAIPAELFKIIIDLKDCFFTIPLHPEDCHHFAF
SIPQVNFQGPMDRFHWRVLPQGMANSPTLAQKYVAQVIQPIRRAWPQIYLLHYMDDILLGGPDKQQAFSCFQQLQEALSS
RGLKIAPEKIQIRDPYFYLGYELEFEQIRTPKVELQLSSLKTLHDFQQLLGNLQFIRPYLKIPPEALVPLNELLSGDSHP
LSPRVLTPQATLALQQIGQAISSQVSFQIHYASPLYFIVCATTHTPVGVFWQQPRAPKEKGRPLFWVYLPSNPNKVLATY
YSLSAALIRKGRKMSRQYFGKDPDIIIVPYTSXQVDWLFQSNDDWAIACASFAGIIDNHYPNDPLIQFIKIHSLTFPKVT
SKTPLHEGALVFTDGSSTGKAAYVIQEQVTTIQSPYSSAQLVELFAVLQVFKKLATTPFNLYTDSAYVAHSIPVLETVPY
IKPASTASKLFVEIQSLIIKRTEPFFVGHLRAHSGLGGPLSKGNTLADEATRAIFPALIDPIDQARRAHALHHLNASTLR
QMFKISRDQAREIVKSCGGCATLLPVPHLGVNPRGLVPNERWQMDVTHLPSFGRLKYLHVTIDTYSGFIHASPLSGEASR
DVITHTLQCMATMGKPQIIKTDNGPGYTGAKFQQFCAQFGIKHITGIPYNPQGQGIVERAHQTLKNMLQRLTTVTDAYSP
LTPRNRLNHALFVLNFLSLDIEGRSAADRLWHPKSQDSHALVRWKDPLTGHWKGPDPILIWGRGSACIYDKENAGPRWLP
ERLIRTVNPPMSRMELSSPPETYPFSLPDAAPEKDPFDPATDRGDLHPSSPTAQVL
>RNERVK9_gag#LTR/ERVK 306-1976  [Rattus]
MGTSQSRPIFLALQELFERKKLKIKRSTIERFLSECDAIAPWFAVSGNLTVASWDKLGKDLDFAREQGTLRPGVRPVWRL
VRSCLEDQKCCQAAIEKGQAALEMLQEERSEKQGSAKETDSEKTDTEEETDETDSEEELQELIDQMRKQSLRNRQKKKRK
KPKMAEEPPGRFPSAPPPCNVVEGGSRVSGSTFCPEVWKAVRTELHLAYPVYVDANQQRYHEPLDFKVIKSLAESVRTYG
ITASFTIAQVEALHRFCMTPSDWTNLARACLSPGQYLDWRAFLIEFANEQAAANLAAGGGQAAWDRDMLLGQGRFANAQT
GYPGQVYQQINEVATKAWKSLPNKGEVSGNLTKILQGPMEPFSDFVARLVEAAGKVFGDPDTAMPLIKQLAYEQCTRECR
AAITPYKNKGLEAWMKVCREIGGPLTNAGLAAAVMQMTQRKGGSSGACFKCGKQGHLKGQCPERRSLVSTGSGQRPRQPG
LCPKCKKGNHWANECRSVKDINGQPLSSGFGGACPKNGQRGPRPQGPQIYGAVENQDVEQSHERWPSLRHPRGQGEP
>SRV1a_pol#LTR/ERVK gi|2290196|gb|AAC97567.1| polymerase [Simian type D virus 1]
KRVWKFLAQATDIPAPQKCADPITWKSDEPVWVDQWPLLNDKLSAAQQLVQEQLLAGHITESNSPWNTPIFVIKKKSGKW
RLLQYLRAVNITMVLMGALQPGLPSPVAIPQKYFKIIIDLKDCFFTIPLHPADQKRFAFSLPSTNFRQPMKRYQWRVLPQ
GMANSPTLCQKYVAAAIEPVRKIWTQMYIIHYMDDILIAGQIGDQVLQCFAQLKQELTTAGLQIAPEKIQLQNPYTYLGF
QINGPKIINQKAVIHRDQLKTLNDFQKLLGDINWLRPYLKLTTGELKPLFDILKGDSNPKSPRSISKEALTALQQVENPI
TTQFVTSIDYSQPLIFIIFNTAITPTGLFWQNNPIMWVHLPSSPKKVLFPYYDAIADLIILGRENSRKYFGIEPSTIIQP
YTQSHIHWLLQNTEAWPIACASYTGTIDNHYPPNKLIQFCKLHAFVFPHITSKEPLNDALLIFTDGSSTGLAAYTYNNTI
VKFQTTYTSAQLVELQAIIAALSAFPCQPLNIYTDSAYLAHSIPLLETVPQIKHISNTANLFLQCQQLIQKSTTPFFLGH
IRAHSGLPGPLAQGNSTADMATKTIATVTTDNLQQAQKAHALHHLNAQTLRLMFKITREQARQIVKQCANCITYLPVPHL
GVNPRGLIPNEIWQMDVTHHSEFGQLKYIHVCIDTYSGFIIATLQTGEATKHVITHLLHCFSILGIPKQIKTDNGPGYIA
KTFLQFCNTLQIKHITGIPYNPQGQGIVERAHLSLKTTIEKIKGGS
>TguERVK5_pol#LTR/ERVK 3838-6465 [Estrildidae]
METTSKPATLKLNWKTDHPIWIDQWPLTEKKLNILKRLVKEQLQQGHITPTNSPWNSPVFVIHKKTSDSWRLLHDLRRIN
EVIEDMGPLQPGLPSLSMIPKHWPLVVIDLKDCFFHIPLHPDDAPRFAFSVPVINRREPMQRYHWKSLPQGMKNSPIICQ
YFIAQVLSPVRQKYPRSVILHYVDDLLIAAPTLPEMEQTRASVVTEIQNAGLEISITKIQEVPPWKYLGWKMTEKTITPQ
RIQLRTSVNNLQDLQQLLGEINWVRPVLGITNDELGPLFDLLRGSCDINSPRTLTPEARAALDKVMEALQRRQAHRCVPE
KPFLFAILGEKMQLCGLIFQWDPSERDPLLIIEWVFLPYRSPKTIFTVLEMIAQIVIKARTRLLTLAGQEFAVIYLPLKK
DYLDWAMQNSDDLQYALLNFPGICSVHYPAHKLLQAKLSFREKPMLSEEPLDAITLFTDGSGKSHKSVITWLNQTTKAWE
SDVQIVEGSPQIVELAAVVRAFQLFPQPFNLITDSAYVANVVKRIEGSVLKDVSNDILYRWLSCLYTTLQYRTNPYFVSH
IRAHSSLPGFLVEGNARADKLTMVISNTLPNIFEQAKLSHAFYHQNAQALVRMFQISKSQAKAIISACPDCQLVQPPVST
GAVNPRGLQSLQLWQTDITKYPSFGKFKNIHVSVDTFSGAVFASLHTGETGNHACHHFLQAFASLGVPQEVKTDNGPAYI
SQKLATFLKDWGVRHIFGIPHSPTGQAIVERAHQTLKRXLDQQRGGMEATPQMRLNKALYVFNFLNSSVAEPDPPIFRHF
SNNTQAKLKENPLVLIRNPETGQIEGPFRLITWGKGYASVSTGAGIKWVPAKNVKPYHSQERVDESKTVEASTQT
>TguERVK2_env#LTR/ERVK 5930-7318 [Estrildidae]
NVCFSLLEKTYLPLNPVMNPXRVVILXMLXSQAAAWIVPQPRQNVWVTLAQTLQQENICLSTAAAKDPMSTCLVGIPWQA
GEFPAGLDKHRSNEIPESHTPRPHKDQKQVGXILKSLEEWLRGLPRMAQEPQELELLGSSPAAYCVHFAVLPKPSNTDEY
HVIKQHRGEFTARRWCQNTSHIGADNPSHSSPKGLPKGLFLICGDRAWAGIPSRLLGGPCTIGRLSVLTPNQTLIGEWTH
KNKSANKIQKRSADXLDPNCNSEIFHWAKSKRVAVSLFLPWVAAAKALGELGHLECWVVKQANLTSAAISSLLEDEEITR
QATLQNRAAIDFLLLLHGHECKEFEGLCCMDLTSKAPNVHAALRSMNSLIGQVKQESEDWFKELFKGWGFTGWWTSVVRS
ILLVLVILFLVTLAFGILRHLIFKAIKGLIPSTSEVNHIELANLRRPDYATNXGWWETHTRG
>ERV3-3_Crp-I_2p#LTR/ERVL 1559..4843[Crocodylidae]
GVRPAQPPKRGATMGAVASRGPVSKVNIGPLIRIPVQIQLGKSKKSIDMLLDTGAQICILDSADWKGEKGTPYQVIGVGG
TRRPGHLVRATFALPNGSKVTAAAVILKGGPSLLGLNVLRGQRFALEQENWQFGCAVPHQETEETAITAVTRCSMIPLTL
PPMKGVHRPQYRTPPEATQPIQCIISQQLEDGTIIRTHSPYNNPVWPVRKPNGGWRLTIDFRALNANTDPLTAAVPSLPA
LTESIRCYGPAWMGSIDIKDMFFAIPIQESHWPVFAFTWMGQQYTYTVLPQGWIHSPTLAHGVLATIVHEVQEKYPDVRM
WQYIDDVMVGSQDREAATKAFESLQEKVLTFGFTLSEQKIQKVGPQCEFLGIEWQNGGPTIPTEELRNIVETPTPTNVKE
LQAQLGALNFWRMHVPEFSVLARPLYNLCKKRTKWEWGPEHKYALQALKEAVTVHASLAARRPEGELWLHIGVSEGGPHW
SLWQKKSSEAEGKPLGFWSRGWRGAEARYTLLEQMLCAAAAALEATEALRGELPTVITTPIPILGMALSDRQLPPGGRAQ
DTTVQRWIYYILSQVQRVTPKGRPALVERVTESTINVYPDQTSCSEPSPIKEAPPFSPEMETSADVEVWFTDGSARGRAW
RAAALRIRDGKQVVSQGLGKSAQYAELQAVLSVAVWELTEGPRPKRPIYIYSDSWMVVEGCTKWLPLWHKENFKRRGQDI
WSHEEWKALWELAQDKLPLHIRHVSAAHGNKAGEGPEAKWNRRVDQLTREESAETLYVEEKNKAAGPSLPNSSSHCTPGE
RAAEWLHRQHGHPGRDGTARLAASWGIHVTKKEAQEIVGACITCREVKMRLKPCPTVPLSLREGKVAWQVWQCDFIGPLP
RTSRKRQYVFVAVEVVTGMTFARASARATAQDTCAALETLLAVYPPPIEIQSDNGPHFRNHLVYDWTAKHSMLWTYHIPY
HPQSNGLVERANGILKCNLRLAAGPALKDWDLHLDRAINWANNRPRPGGSPMQQAFGLGGPREPAVERPRGGDPGKLQAG
DRVVVKHPQGDKWEGTLLARGMHNTWWVFKSDSPNGSQAPCCLVPTDWICPQVQP
>ATGP8_gag#LTR/Gypsy 372-1595 via tfasty with ATGP2I, 1 frameshift and 5 stopcodons.  [Arabidopsis thaliana]
MPPRRARRPANARINRVAKAPVVGQDQPPVVAQPAQAAQADEAAQAANAAHAAEIAANRTEMQELxNMMREILDRPVYAP
PPPPAPGVAAPQYHQPPPPPPAPRVEVPxYHQPPAPLARTEYFGTMKLMSTMGTEYFSGGFGxVRADDWRQMLEKNFRTA
RCPEEFKKDLAVHYLRGEADHWWKNFKRGLPAGYVPTWEDFLREFNNKYFPREAMEQFDHEFMELRQGTRTVREYDEEFS
RLRRFTMKNFGEQDMIQRFMRGLRVDIRTRTSIRGCTSLVELVEEAARLEIGLVEEVMDLKKAQAKVTKGAESQKRTWDN
RGAVSVQNGRALRHMWxEAQRACxSKSGNCFSCGQAGHIWSNCPGKDNNCRRCWKPGHFARDCRVNLAGGQPGNQNRGIM
PPPPKRQAVGPRVYAIAGEEDVDEDGADPIVGKSS
>Afun1#LTR/Gypsy 78-1086 [Anopheles funestus]
MNVVDNKSVFVKTVRVEGETMMALVDSGARVSTIQQKWADKIGNLKPTHKILRGFGRKEIQVNSKVVTELLLDNVKLEIE
LQVVPNWVQDTAIIIGEEVLGKEGLVXTVRAGSVTFQMEPNCRSEEKEREDENDSAKSVMHMFTIKEGSRQVVDRKMVNS
DGSYEHTVRLIKVVNEYRDVFALNIKELGCAKSTAISLKLTQIEPVYVKPRKLEYAREIMLNEMVEELLEAEVIKETDSP
YNSPIVLVPKKNGRFRMAIDYRMLNAKTVKDKFPMPDLEQCLQRLSGAKMYITLDLFSGYYQIPVHQDSQDYTAFSTPSG
HFKFTRMPFASPTQPN
>ATGP9BI#LTR/Gypsy 34-2184 [Arabidopsis]
MAETRSQMFYREVSAIHETMYPSLKVVCGHKSDVRSGKAATTNQQFGVQSSPCIGESMLDTRAYNIGRSSQLISTAPIVT
PDTSKERVGMSNKYFPLEERSDFARLEHLRFNGDRITEWLFQIEQFFLIDRTPEELKVGFASLHFDDTAATLHQSIVQSM
WWKHVRHDWWSYKLLLQVRYDEHVNDSIAKLTQLQETEGIEEYHARFELISTRLNFAEDYLVSVYLAGLRTDTQLNVRMF
GPQTIQQCLMLGRLYEMAHPKSVLIRKKSDDYQKEAQHVSSNAAGTSMINDGNCMIGNDGDRFLSGSDLVENAVATVKKY
LVEIDDAMSSDDDQNSDAGDVFGFNIEECETDSWIEHKPLIQDQAAFHSIDIEGVSQLQKVRSNLKDFDKVDATMNQMLS
SIGFVVDELHSSCGSATVHVQKKPSKSLKSWKFKFKTSSQDQGDHESLPIGLHIRFKSWKFKFVNRNLQMMREHGYTTHF
QLMSDKREHQEMFIVARIVDVRCLLSMILGITESDAGHGEQFVYDRITMVKRLLLQTSLVIQEVMRNKKIKFTKRWWFKY
KFGEEGFTRLNSFNLRMTYHFAVWHCWKSKTMVHVEMSGDHWSWMVLVMKSTTSSFLSLLYDRRMGDPSRHETGREIVSL
QGQIHTGSPMIQCIKMSFSILLLQGLFQSLTMKMLTYMHLFGSKSCVSTLGVRKLGKDWWFKYKTDARATDLLTNP
>Athila6B_gagpol#LTR/Gypsy 163-5818 [Arabidopsis]
MQTRSRGNQNLLFNDNIDRIARQLRTQTETDTMAAVVDEQVQPNNIGAGDAPRNHNQRNGIVPPPVQNNNFEIKSGLIAM
VQSNKFHGLPMEDPLDHLDEFDRLCSLTKINGVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSN
SRTARLRNDISGFTQTNNETFCEAWERFKGYQTQCPHHGFSKASLLSTLYRGVLPKIRMLLDTASNGNFLNKDVEDGWEL
VENLAQSDGNYNEDYDRSVRTSSDSDEKHRREMKAMNDKLDKLLLVQQKHIHFLGDDETFQVQDGETMQSEEVSYVQNQG
GYNKGFNNFKQNHPNLSYRSTNVANPQDQVYPSQQQNQPKPFVPYNQGQGYVPKQQYQGNYQQQLPPPGFTQQQQQPAST
TPDSDLKNMLQQILQGQATGAMDLSKRMAEIHNKVDCSYNDINIKVEALTSKIRYIEGQTGSTAAPKFTGPSRKSMSNSE
EYAHAITLRSGKELPTKESPNQNTEDSVDQDGEDFCQNGNSAEKAIEEPILDQPTRLLAPAASPLVEKPAAAKTKDNVFV
PPPYKPPLPFPGRFKKVMIQKYKALLEKQLKNLEVTMPLVDCLALIPDSNKYVKDMITERIKEVQGMVVLSHECSAIIQQ
KIIPKKLGDPGSFTLPCALGPLAFNKCLCDLGASVSLMPLSVAKKLGFNKYKPCNISLILADRSVRIPHGLLEDLPVMIG
MVEVPTDFVVLEMDEEPKDPLILGRPFLATAGAIIDVKKGKIDLNLGRDLKMTFDITNTMKKPTIEGNVFWIEEMDMLAD
EMLEELGETDHLQSALTKDSKEGDLHLEILGYQKLLDEHKAVENPGEYEDLGERAREEYILDLITRPTAHSVYSTELLDH
NNPSEANLVSDDWSELKAPKVDLKPLPKGLRYVFLGLNSTYPVIVNDGLTADQVNLLITELKKYRKAIGYSLDDIKGISP
TLCTHRIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRT
ITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGL
CNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGHKISEE
GIEVDKAKVDVMMQLQPPKTVKDIRSFLGHAGFYRRFIKDFSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAPI
VQAPNWDFPFEIMCDASDYAVGAVLGQRIDKKLHVIYYASRTMDDAQVRYATTEKELLAVVFAFEKFRSYLVGSKVTVYT
DHAALRHIYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGVADHLSRMRIEDEVPIDDSMPEEQLMAIQQLNESAQIRK
SLDQVCTIEEKLPWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRRCVSEDEIEGILLHCHG
SAYGGHFATFKTVSKILQAGFWWPSMFKDAQEFISKCDSCQRRGNISRRNEMPQNPILEVEIFDVWGIDFMGPFPSSYGN
KYILVAVDYVSKWVEAIASPTNDARVVLKLFKTIIFPRFGVPRIVISDGGKHFINKVFENLLKKHGVKHKVATPYHPQTS
GQVEISNREIKAILEKIVGSTRKDWSAKLDDALWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAMWAVKLLNFDIKT
AEEKRLIQLNDLNEIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQVLLFNSRLRLFPGKLKSRWSGPFSVTAVRPYG
AITLAGKNGDFTVNGQRLKKYMIDQFIPEGTSVPLEEPLNA
>Athila4C_gagpol#LTR/Gypsy 155-5473 [Arabidopsis]
MADFHDCVDRHHQGVDRHPLQNQTATIGDFNRTDLFYTNRSAFKLPPFERDDFAIHPAYYDLVSRGKFRGAPDESPLDHL
EVFEDIVSSIKAEGVPADYLLCKLFPHSLASRGTSWLRQLEPGSLTNWTDTKNAFMNHFFDESVTEAIRLQISSFTQAPA
ESLRASWLRFRSYQRECPQHGFQESQLINLFYKGIDKPYQNQLDAASSCNFMTRTTSEALLLITNALTCLSTQEFDKERR
ISAEIATASKETPVSAISAPIQAPPPPSSETRMESMLAQLLAGLTKLDTKYESLSTKLDSKYDSLSTDLNSKIDNLRSQF
SNLSPTSASINAVTLRSGKQLNPILQRERSAQPSSFPIAENESVSIDTPGCRSTPITLDDSVFPLSSGIDNFAEEEETIP
DGVDRHPAPVDRHPARSDNVQIPAATKSANRRIPFPKSPKKSRQALDDVRCKAMIDKLIVEMPLVEAIHLSPTIRRYVKT
MVTKNLTKECSVMMISEQGSDIIQERIPRKLPDPGTFVLSVTINHDSFPRALCDLGSSVNLMPRSVAMRLGYSNLEPTFI
TLVLADRSTRIPDGILIDVPVMIGKSMIPTDFVVLPYEKEPKDPLILGRSFLHTAGAIIDVRQGRIGLNVGDLTMQFDMN
TLVKKPIIEGKTFLIDSFTSSASDSISEMELEDPLERVLVSSIEDSADLDSETSTYTKLLDETEHVMQLTVEEALPSVTS
TPTTTSDWDPAKAPKIELKPLPAGLRYAFLGENSTYPVIVNASLNPAELTLLLSKLRNHRKALGYSLDDIAGISPDVCMH
RIHLEDESKSSVEHQRRLNPNLKEVVKKEIMKLLEAGIIYPISDSSWVSPVHVVPKKGGVTVVKNEKDELIPTRTITGHR
MCIDYRKLNAATRKDHFPLPFIDQMLERLANHKYYCFLDGYSGFFQIPIHPDDQEKTTFTCPYGTFAYRRMPFGLCNAPA
TFQRGMMSIFTDMIEDIMEVFMDDFSVYGSSFEDCLENLYKVLARCEEKHLVLNWEKCHFMVQDGIVLGHRISEHGIEVD
RAKIEVMTSLQALDNVKAVRSFLGHAGFYRRFIKDFSRIARPLTALLCKEVKFEFTQECHDAFQQIKQALISAPIVQPPD
WDLPFEVMCDASDFAVGAVLGQRKDKKLHAIYYASRTLDDAQRNYATTEKELLAVVFAFEKFRSYLVGSKVIVHTDHAAL
KYLMQKKDAKPRLLRWILLLQEFDIEVRDKKGVENGVADHLSRIRIDDDVPINDFLPEENIYMIDTAEEDDYKRDRLQNR
ASVSIDTPIMSIDTHISEEVDIRSCAMVSIDTIAPVDRHPSESTRNWSPTENCAVTAVEKDYPWYADIVNYLAADVEPDN
FTDYNKKRFLREIRRYYWDEPYLYKHCSDGVYRRCIAATEVPDILSHCHSSSYGGHFATFKTVSKVLQAGFWWPTMFRDA
QKFISQCDPCQRRGKISKRNEMPQKFILEVEVFDCWGIDFMGPFPPSNKNLYILVAVDYVSKWVEAIASPKNDSAVVMKL
FKSIIFPRFGVPRIVISDGGKHFINKILAKLLLQYGVQHRVATPYHPQTSGQVEVSNRQIKEILEKTVGKAKKEWSYKLD
DALWAYRTAFKTPLGTTPFHLLYGKACHLPVELEHKAAWAVKMMNFDIKSAGERRLIQLNELDEIRIHAYDNSKLYKERT
KAYHDKKILTRTFEPNDQVLLYDSRLTIFPGKLSSRWTGPYTVHSVRPYGTVILKNNNGKPFAVNGQRVKHYWAEAEIPV
EKPLDLQDPPVD
>AFLAV_pol#LTR/Gypsy 1065-6245  [Aspergillus flavus]
MEKRDNEAWRKGSHRPKGQYKSNDQRERTGVKHNDPYGPKPMELDATEGQGQSKGISQKERERRRREKLCYNCGRAGHMS
KDCRQKRNSQPANRKPQQMNATEDEAEPPKKVRFAQLNATAGNSEPHNKARGASVPPGSIVRLWMRSAGNRSHTAQCQHD
LSAEEIERHRENEPNDDDWITLDWLTIHTNQTIWPRINQDWSNLQDATEQWYGQLNEHEIDELADNANNETNRLGRVNSE
SQYEAIMEPIRERVRYALTHRVDGPDNTDQYNEPVSSIDQSNRALVEIDPLNEEYGTQWIGHDPNMEGLLEVPETPENPQ
DEDENAHRRVMALIDTLQEVVSPRRRTPVSRPYQMQQVEVEPPRRQETLTNWTNNVIDEIVRNPRRFSRPLRMLLEQCPH
WNHECWDSNIENWDEHCQQCDKHPIVCEICGADRFEYYGELELINPDRAKRGHEGTHHWLRECECCHYATEPMHNRYPWV
VCFDDSCTHHRIWKQIARFWPQNDANRRTLAATRQGRHITTIIVVNGKPARAMIDSGATNNFMSPRYRENMKIEGRQKEN
AEPLLGLDGQKLGTGQVSVETVPVTMAVGQHVESIAFDITPLGNKYDVVLGISWLEDHNPTIDWKQRTLHLNNCHCPKGP
CMGYGTRTLTSKCTGSGRIERRDQDTAKGNSAKNMIMAATRYSEKEWLAELMGWAPANEQERLEVMTLGSESEEEWHSSP
ETNQTSPKSNSDSWTLLDSQELAANSAEQPSLPKEYQGFRELFEQPRTNKLPEHGPHDHTIPIQEGKEVTCKRIYPMSEK
ESQALKEYIKDRLERKQFDHRKSPAGHGVLFVPKKGGELRLCIDYRPLNDITVKDRHPLPLITEIQDKIRGAKWFTKLDI
TDAYHRRRIAEGEEWKTAFRTKYGHYEYLVMPFGLTNAPASFQRFINEALGEILDVFVIAYLDDILIFSHNLEEHVQHVQ
TVLEKLRKAEVRLKLKKCEFHVQETEFLGHWISTEGIQAEEGKVKAIREWPEPTNLKELQQFTGLLNYYRKFIDRYAHKL
APLFDLLKKSKQWEWTNEHQSAFDKAKEAITTAPILAQHDPAKQTIIETDASDYAIGARMVQAEPDGKPRPIAFESRKLV
QAELNYDIHDKELLAIVSAFKKWRVYLEGAQHQIIVKSDHKNLTYFTTTKELTRRQQDGLKRYHSMTLGSNTGKGSENGQ
ADALSRRPDHEIKGKTIETAILKQHEDGSIGYNKQTLAAVTVEIKDPTRHLIAKANKRDEALTQKLEASDDLFTKDEDGI
VYYRNLIWVPQKLRNMIIQEHHDNPTRGHFGVEKTSEQIARNYYFPKYGQAVRKYIDKCETCIRDKPARHKPYGLMQSPD
APSKPWEWITIDFVGPLPESEGWDMITVITDRLTKYIHLVPSKSTLDAVHLAHLLVNHVFVHHGMPEKITSDRDKLFTSK
FWQSLTDLMGIDQKLTTAYHPQGNGQTERTNQTIEQYLRHYVNYQQDDWANLLPTAQFAYNNAEHSTIGTTPFYANHGYH
AKVAGEPRNKQPVAEEAIETVEGLKSLHNQLSLDIKFFNHRAAMYYNRHHEKGPTFKKGEKVFLLRRNIKTKRPSSKLDH
QKIGPFKIEEKIGNVNYRLKLPDSMKRIHPVFHISLLEPAPENAKIAENIELDKEGTEYEVEKILKDKRVNGKPHYLVKW
KGYSTSENSWEPIENLRGCHQLVRQYHQQKGQNSPKRRGRSSSESD
>HERVL18_pol#LTR/ERVL 1528-4882 via tfasty with GGERVL18_pol, 2 frameshifts and 5 stopcodons.  [Primates]
DQRPHVELAIHWSPTNVQWVLALVDTGADCSLVYGNPDKFPGKAAYIDGYGGRSVKVKPVSLHLGIGRLAPRLYTAYVSP
IPEYILGVDILHGLDLQTMAGEFRLRXRVVKPVLRGHTHHRPQVLPQPxRVTSTHQHRLPGGHTEITETIKKLKEVQIVR
GTHSPYNSLVWPVRKPDGTWRMTVDYRELNKVTPPLHAAVXSIMDLMDRLTTELGQYHYVVDLANAFFXIDIAPESQEQF
AFTWEGxQWTFTVLPQGYVHSPTICHGLVAMDLAAWKCPKGVHLFHYIDDIMLTSDSLADLEAAAPLLRQHLAACGWAIN
ESKVQGPGLSAKFLGVIWSGKTKAIPEAVIDKIQAYPRPTTVRQLQTFVGLLGYWRAFLPHLAQMIKPLYQLTKKGATWD
WXDEAETXFLAAKWAIQQARALRVIDPGCPFELDVHVTTDGFGWGLWQRTEHFRMPVGFWSQLWKGAELWYSLIEKQLAA
AYAALQACESXTGWATVVVWMTYPIAGWVRSWVTTPQTGMAQTSTLAKWGAYLEQRSTLSTSPLAAELQEVLGPVVLMQD
KAMGPEAPLDPEPSPFKEGRPPIPDGAWYMDGSSRGATAAWTAVAVQPSTETIWFXTGCGQSSQWAELRAVWMVITKEET
PMVICTDSWAVYxGLTLWLTTWKLQNWLVGHQPIWGQTMWQDLWEMGHQKDVTIYHVSGHMPLAAPSNDEADALAKVQWL
ESASTxDVALWLHRKLGHAGGKLMQQVNKRWGLSLPTQDIWEACQKCPACAQAYPRRRQLPSXTQQVTVGRMPLTRWQID
YIGPLPKSQGYTHALTAVDMATGLLFAYPCRVADQQHTIQALQHLCALYGRPLAIESDRGTHFTGQQVQQWAQQMDIKWG
FHVXYNSQAAGMIExYNGLLKNGLHLHVTPPSLRGWSSRLDLVLQILNERPRKGGPAPVEALLHRAAAPIQLQIHTKDDL
LRPGMGTNGNLLLPAPTPLKAGEQKTWXWPWTLQAPXCRWLAIVAXCGEGLQYDLHVTPWVFNVWPPRLTVHRGTAREGT
LLRGTYVLSVWPIMSSPVTLARIQDPKEPRGAEKVWYHCPGQKPLVAALLSRDERLACILPEGRDLPLLVPVPALSFRP
>GGERVL-A_pol#LTR/ERVL 2237-5422 [Gallus]
RGPAPSQGGERDNRVYWTVWIRWPGTSEPQKYKALVDTGAQCTLMPSSHQGTESIYIHGVTGGSQELTMLEAEISLTGKD
WQKHPIVTGPGAPCILGIDYLRRGYFKDPKGYRWAFGIAAVDTEGVKQLSVLPGLSEDPSVVGLLRVKEQQVPIATKTVH
RRQYRTNRDSLLPIHKLIRQLESQGVISKTHSPFNSPIWPVRKASGEWRLTVDYRGLNEVTPPLSAAVPDMLELQYELES
KAAKWYATTDIANAFFSIPLATECRPQFAFTWRGVQYTWNRLPQGWKHSPTICHGLIQAALEQGGAPEHLQYIDDIIVWG
NTAREVFEKGEQIIQILLRAGFAIKRSKVKGPAQEIQFLGIKWQDGRRHIPTDVVDKITAMSPPTNKKETQSFLGVVGFW
RMHVPNYSLIVSPLYQVTRKKNDFAWGPEQQQAFEQIKQEIARAVALGPVRTGQDVKNILYTAAGEKGPTWSLWQRASGE
TRGRPLGFWSRAYRGSEERYTPTEKEILAAYEGVRAASEVVGTETQLLLAPRLPVLNWMFKGKVPSTHHATDATWSKWIA
LITQRARMGNLSRPGILEVIMDWPEGKKFGTSPGEEVSRAKEAPPYNELPENEKKYALFTDGSCRIVGKHRRWKAAVWSP
TRQVAEATEGKGESSQFAEVKAVQLALDVAERERWPVLYLYTDSWMVANALWGWLQQWEQNNWQRRGKPIWAAELWKDIA
ARIKNMVVKVRHVDAHVPKSRATEEQKNNHQVDRAAKIEVAQIDLDWQNKGELFLARWAHETSGHQGRDATYKWARDRGV
DLTMDAIAQVIHDCETCAIIKQAKRMKPLWEEGRWQKYKYGEAWQIDYITLPRSRNGKRYVLTMVEATTGWLETYAVPHA
TARNTILGLEKQVLWRHGTPERIESDNGTHFKNSLINTWAKEHGIEWIYHIPYHAPASGKIERYNGLLKTMLKAMGGGTF
KHWEKHLAEATWLVNTRGSINRDGPTQSSSLHTVEGDKVPVVHVKSMLGKAVWVLPASGKGKPLRGTVFAQGPGSTWWVM
QKDGDVQCVPQGNLMLGECSQ
>MER70_pol#LTR/ERVL 590-3520 via tfasty with MERVL_pol, 5 frameshifts and 4 stopcodons.  [Eutheria]
VPTGGQWPYTPVKIKGEKKGIQTFLGFLDTGAHMTIFPGPLRGKIKLMTSGGLGTNMVTHGAYLLMVLICLWVGPFGPFR
VPVTMVPTAECIIGIDILAACGTEHHRCLRGYAPSQLRIRAITVGHIHSCLPPKLPKSQWVIQQKQYCILSGEKDITLLI
QDLLQIKMLQTTLSQCNSPVWLVKKAFGAWRLTMDCRRLNAVVAPIDTRGPDITTVIEHIMEASNQWYDAVIDLANGFFS
IPLRDKGRDQFVFTWQSIQYTFTVLPQEYLNSPAICHQWVGWDFATVLLPKVVMCIHYIGDILIVALDDPITQEALDLMV
TGTxQADWEVNPKVLGSAKLVTFFKATWAGSQRSIPDTVKQKLLALAASTNKKEAQQLVGLFGYWRQHIPHLGVLLAPLV
KVTNKAANFEWGPLQQQALEAIQQVVAQALPLKPLQPASPMELQVSATSMHADWSLWQQKTATGVHQPLRFWTHKLPEAA
TRYTSFEWQLLACYWALVETEHLTAGAPRVTLQPELPILTWVLTNPTSKIGQAQQSSIIKWKWYIQDRAQPGPQGTSGLH
EQMASLPEGTKRPVGDALAPPVATWGPRFRDMPTDGMAWWFTDGSAKQQGQWVHWAVATIQPVDGHLLTETGHGRSAQWA
KLHAVVMAMQAAPTTISCYIFTDSWAIANSLAIWSGEWQLSDWTIKGSPVWGQGLWQQLAAWKGQIYVTHVDAGTTMATL
ERNLCHVFGYPMGLHSDQGTSFTAQATxQWAHSHGTRWTFHAPCHPQANGAIERWNSRLTQQLKKGHQDGLLVGWYPHLT
RAIWTLNTALQCKGNTALQRMLRNTELGGGGGGPGSRLIRLRLRNPNLSVPNHSFSFFPLQCTSWGWFAVQAAIVPQTGP
PDSNLEAMLPLGASLLWDPTGVGDGTKEYQGARVPLVAPGTSDPSSRVGDVIRHVKFVQDVTSLPGLDDxGxKVWVKQQG
QWCPAEVVASGQGQTDWV
>HFV_pol#LTR/Foamy gi|9629129|ref|NP_044280.1| pol polyprotein [Human foamy virus]
MNPLQLLQPLPAEIKGTKLLAHWDSGATITCIPESFLEDEQPIKKTLIKTIHGEKQQNVYYVTFKVKGRKVEAEVIASPY
EYILLSPTDVPWLTQQPLQLTILVPLQEYQEKILSKTALPEDQKQQLKTLFVKYDNLWQHWENQVGHRKIRPHNIATGDY
PPRPQKQYPINPKAKPSIQIVIDDLLKQGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILA
TIVRQKYKTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEIPNVQVYVDDIYLSH
DDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLLNITPPKDLKQLQSILGLLNFA
RNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMVIEALNTASNLEERLPEQRLVIKVNTSPSAGYVRYYNETGKK
PIMYLNYVFSKAELKFSMLEKLLTTMHKALIKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKALPIRWITWMTYLEDPR
IQFHYDKTLPELKHIPDVYTSSQSPVKHPSQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNH
TAQMAEIAAVEFACKKALKIPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQH
EKGISLQIPVFILKGNALADKLATQGSYVVNCNTKKPNLDAELDQLLQGHYIKGYPKQYTYFLEDGKVKVSRPEGVKIIP
PQSDRQKIVLQAHNLAHTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKASGPILRPDRPQKPFDKFFIDY
IGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFS
TPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTPFANQDTLDLTRE
EELSLLQEIRTSLYHPSTPPASSRSWSPVVGQLVQERVARPASLRPRWHKPSTVLKVLNPRTVVILDHLGNNRTVSIDNL
KPTSHQNGTTNDTATMDHLEKNE
>TguERVL-A_gag#LTR/ERVL 87-2132 [Taeniopygia guttata]
MEQLLVMLFELILSLGVKACMCLWSLGXFEILIPLWSLGLFFYPGIAPVLSLIRRFCSRRALTRISIXLCLGVIASRGFI
KVLRSVPGMYGSWLWLYSQFVRGEVGDEAFQPLLSFFSSEFVTSLLENVQFPLTVKETIFLVFNLVSFLYTVCSLSRMRA
EISRGADETSDPGVDPGVRNPEWCGKWEDMGQILKEFSDPIAWDFPSEQIQNPAEVAKYLKEKCHDNSKEKKIIAVSWAL
AYAYRTLLDTVGQQTEEGGQGDKSAAIPVTQAAANTPGSKPAAKPDSEPRLAAKPDSAAKPQPMAVATSTRSGKRTEKTN
RPVDDDDDDDNAGEGPSMPADIKSEVKATGTRSEANTESFSLKDLRGLRKDYTRRPDESVISWLVRLWDAAGEATILDGT
EARHLGSLSHDPVIDQGMMRGANPHSLWARVLESVAQRYLCADDLYMQQTQWKTIEQGIQRLREMAVAEIIFSDEITTRN
PDLVPCTSVMWRKLVRLGPHDYASALAIMKQDERDETVLEMARKLRAYADAVHGPTHARIAAVETRLQKLEDKIEENHKR
LREEIKEDLLQISAVQIRGSGIQRRRSSDGERRYTPRTELWFFLRDCGENMRKWDGKPTGALAQRVRELKEGKTQRGSAT
KRRAAPVARSQTARHDDDDDMSDPLEGTSKTYAQGKKDNQA
>GGERV28_env#LTR/ERVK 5364-6772 [Gallus gallus]
MKQPTNLWVTWANLTGQTDFCLSLQSAAEPFRTCLVGLPQYQLEDFHGYVTNVTTCEDKNDTAAESACLINSLNRTLPWD
PQELDISGSQAVRNGSGNGTRTCVCFGTVCYASEGRRTCVCFGKSLRTSGIGGITTQAILTQLATWGLSRDQYPYENKAW
TLVSPINDHSFSLTGSYCGYTANVTRKIRGQNVTGLWPFYAYGVTFQTNSRESLLNNSTAKALPPGIFLICGDRAWQGIP
ANALGGPCYLGRLTLFAPQQQQWLNISKSMMATTRRRRSTGNLQPDCNDGVELWSATARMFASXXTPGVAAAQALRQIEX
LACWTIKQSNETSLILDALLEDMNSTRHAILQNRAAIDFLLLAQGHGCRDFEGMCCFNLSDHSDSVHKQLQWLKGHTQKV
HTNKNPLDDWLGNLFGGLSPWLLGLVKEGLRWLLTIITLLIVLRIAYSCIMRGVERLTQGVVLVQKEKGG
>ETnERV_pol#LTR/ERVK gi|38093475|tpg|DAA01918.1| TPA_exp: pol protein [Mus musculus]
RERFTVFSVAATVLPASHAEKIQWRNDIPVWVDQWSLPKEKIEAASLLVQEQLEAGHLVESHSPWNTPIFIIRKKSGKWR
LLQDLRKVNETMVLMGTLQPGLPSPVAIPKGYYKIVIDLKDCFFTIPLHPKDCERFAFSVPSVNFKEPMKRYHWTVLPQG
MANSPTLCQRFVAKAIQPVRQQWPNIYIIHFTDDVLMAGKDPQDLLLCYGDLQKALADKGLQIASEKIQTQDPYNYLGFR
LTDQAVFPQKIVIRRDNLRTLNDFQKLLGDINWLRPYLKLTTGELKPLFDILKGSSDPTSPRSLTSEGLLALQLVEKAIE
EQFVTYIDYSLPLHLLIFNTTHVPTGLLWQKFPIMWIHSRISPKRNILPYHEAVAQMIITGRRQALTYFGKEPDIIVQPY
SVSQDTWLKQHSTDWLLAQLGFEGTLDSHYPQDRLIKFLNVHDMIFPKMTSLQPLNNALLIFTDGSSKGRAGYLISNQQV
IVETPGLSAQLAELTAVLKVFQSVHEAFNIFTDSLYVAQSVPLLETCGTFNFNTPSGSLFSELQNIILARKNPFYIGHIR
SHSGLPGPLAEGNDRIDRALIGEALVSDRVALAQRDHERFHLSSHTLRLRHKITKEQARMIVKQCPKCITLSPVPHLGVN
PRGLMPNHIWQMDITHYAEFGKLKYIHVCIDTCSGFLFASLHTGEASKNVIDHCLQAFNAMGLPKLIKTDNGPSYSSKNF
ISFCKEFGINHKTGIPYNPMGQGIVERAHRTLKNWLFKTKEGQLYPPRSPKAHLAFTLFVLNFLHTDIKGQSAADRHWHP
VTSNSYALVKWKDPLTNEWKGPDPVLIWGRGSVCVFSRDEDGARWLPERLIRQMNTDSDSSGKYHSKD
>HERVK3_pro#LTR/ERVK 1777-2647 via tfasty with HERVK22_pro, 1 frameshift and 1 stopcodon.  [Primates]
TSGVGPRRNIDSLTPGTPGSAGLDLPVRERITLIGGDKPIKVPIGIWGPLPAGYSRLILGKSCLNLQGITVVPGVADSDY
EGEIQVVLMSQDLWVFEPEEYIAQLLLIPCKLHPSPxKEKRGNKGFGSTTTxEIYDSQPIAYNRPTCVVQSKGKKLYGLM
DTGADVSVISSKDWPPAWPLRLTSTSLVGVGAAKSVQQSAEILPCLGPDGQSCTFQPYDANIAINLWGQELLTAWDMRLT
NENFHNPGFKMLKDMGYQSGKGLGKFLQGNPNPISITGETDRKGQGCQDF
>HERVK_pol#LTR/ERVK 2911-5778 [Primates]
NKSKKRRNRVSFLGAATVEPPKPIPLTWKTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKS
GKWRMLTDLRAVNAVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKV
LPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTPFHY
LGMQIENRKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRMLTPEATKEIKLVE
EKIQSAQINRIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSFLPHSTVKTFTLYLDQIATLIGQTRLRIIKLCGNDPDK
IVVPLTKEQVRQAFINSGAWXIGLANFVGIIDNHYPKTKIFQFLKLTTWILPKITRREPLENALTVFTDGSSNGKAAYTG
PKERVIKTPYQSAQRAELVAVITVLQDFDQPINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVRKRNFPFY
ITHIRAHTNLPGPLTKANEQADLLVSSALIKAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVN
PRGLCPNALWQMDVTHVPSFGRLSYVHVTVDTYSHFIWATCQTGESTSHVKKHLLSCFAVMGVPEKIKTDNGPGYCSKAF
QKFLSQWKISHTTGIPYNSQGQAIVERTNRTLKTQLVKQKEGGDSKECTTPQMQLNLALYTLNFLNIYRNQTTTSAEQHL
TGKKNSPHEGKLIWWKDNKNKTWEIGKVITWGRGFACVSPGENQLPVWIPTRHLKFYNEPIRDAKKSTSAETETPQSSTV
DSQDEQNGDVRRTDEVAIHQEGRAADLGTTKEADAVSYKISREHKGDTNPREYAACSLDDCINGGKSPYACRSSCS
>HERVK11D_pro#LTR/ERVK 2178-2962  [Primates]
LVPVQCPSTCTTGEDSIDLCSTLPLSLLPGEQPVLAPTGVKGPLPKNHIGLILGGASLASKGVIVHTGLIHANTSDEICL
VISTKSPIFIEPGECIALLLLLPALCPSTESATHTRGVENTFKQNKAAYWVNTISSHHPTCTIKISGKKFAGLVDTGADI
SIITANQWPSSWPKQPSSTNLVGVGKSSDVYQSSLIFPCTGPDDQMGTVQHYITPIPINLQGRDLLQQWGAEMSIPLSNY
SEANKNKMYKMNFFSWKMIRS
>ERVB5_4_RN_pro#LTR/ERVK 2111-3064 [Rattus]
KAGKLPEGPAPGPELETNPWGYRVCPPNTQPSDSDNPRVASLHRATTGSAGLDLCSTTSAILTPEMGIQILPTGVFGPLP
PDTFGLLLGRASLTLQXLNISPGIIDNDYTGEIKILASSTLGPLTVSSGQRIAQLLLIPLIHPDPNAQQKTRGTGNFGSS
DAYWVQQITQDRPLLKLKLDGRSFEGLIDTGADATVISEKSWPSSWPLTTSMTHLKGIGQTTNTQRSSKVLTWTDEEGNT
GTVQPYVVPGLPVNLWGRDVLAQLNLLMRSPNETVAHQMLKQGFCPRQGLGKHSQGIREPIQVNEKLDRLGLGAPNLP
>ERVB2_1A_MM_gag#LTR/ERVK 163-1737  [Mus musculus]
MGQSESKGKKLFLSVFKHMLSGRGLKISDKSLQEFYDFVQKISPWFPEEGSLTLEDWKRVGKDMRKFHEENLSRNVPDSA
FILWQQMRDLLTEKTDLEFLAEEAPSELSDDQKVKPDTGKKKSYCSRKKGIKLEKSESEITDSENDDEWERTKGMAKRVI
KGRKDRFSKHTDSSEEESLIITPAARRPVPKPRRLLPPVGFDAAVAEAKRQGDFTLTCPVICEEGSEPRWEPLSLKTLKE
LQSAVKTLGPTAPYTLQVLDAVASQWLTPYDWYQTAKATLAPGDFILWRTEYEERARKLAQERSSSRNGARPTVPMLLGQ
KDYARPAARLNIPKAVLERINQIAISSWRSLPVPGAKSTVLSGIRQKHDESYESFVARLEEAVSRMLPPSEGTDILMKQL
AWENASTLCRDLIRPIRKTGSLQDYIKACIDASPAVIQGIAYAAAMKGQKFGAYIKNTYGVSCFRCGKPGHLRKDCKNPS
GSKKNVPSGPCPRCGKGKHWKNECRSKFHKDGTPLTREAGQPKN
>ERV41_MD_pro#LTR/ERVK 1924-2745 [Didelphinae]
WPTYFGKLPTGPAPAPSTTRSFVAHFTVSQLQRATPGSAGLDLYCIETTHLPAGDPPQRIKTGVFGPLPDHHFGLLLGRS
SSSSKGLLIYPGVIDPDFSGEILIVVQSLVHDITIDPGIRCAQLILIPFLNIGNSKSNXPRGDNNFGSSDAYWISALRKE
RPMLTILLEGRAFDGLIDTGADVSVISSSRWPSDWPLGNSSGTIAGVGSVTTPKQSTRALSWTYDMYSGTIAPYVIPNLP
LNLWGRDLLTQISLHIGVPQQHELSQITHSAPS
>ERVB4_6_RN_env#LTR/ERVK 4874-6796 via tfasty with RNERVK3_env, 6 frameshifts and 4 stopcodons.  [Rattus norvegicus]
TSPHQIFNYTWVILIGTRDVVSANSSTIAQVPWPNLEVDLCKLALGAHLDWDTPDTYAPQEKAPELADPSTDPGCSNTLR
RVTLALQTGGIYLCPAGHRDRTKARGSGYETDFYCASWGCEPSSSWDYTKAKRKFPNAQVTSLGQxPLTSIYSTDSDLNG
WCNPIQISFTETGKKVNWEQRGFKWGLRYINNIDLGVTPKIKLLKTRPQTPPVAMGPNNNLHPAPRVGSHLRDSLQAIPQ
PNNSSFPSTLYQPTFPDGPSSTANMLIEMLNTFxPALANLNSIIALDDCWICYHSSPPFYKGLATFENITFTNTNETHSL
YCSANSEPTITLSQVSGIGLCLLGPHMGLPPxLLICNKTVVVTTQINDITAPKGTYFACSAGLIPFVVTSHFLTGKDYCV
LVLLFPRLTIHDSSKFLQFWEGGTATSTKREPITTVTLAVLLGLSAVEAGTGVASLITSQQSYHQLIATIDRDISELxDG
ITYLKDSVASLAEVVLQNRRGLDLLFLQQGGLCAALKEECCFYADKTGLVENSLQKVRESLQKRHREREKSEAWYKNWFS
ASPLLTTLLPSILGPFIGLLLPVSFVPWVVRKLTDFIKAQVDLATKQISVYYHRLRCEEAETTGECDTHGWPQLLHPKYS
L
>ERVB5_4_RN_gag#LTR/ERVK 196-2294 via tfasty with RNERVK22_gag, 1 frameshift and 1 stopcodon.  [Rattus]
MGQALSKHDLFLKGLKESLKARGTRVKKKDLAKFFIFLDDVCPWFPQEGTIDEKRWARVGDCLKDFYRTFGPERVPVQAF
SYWNLINEVLRVYKTWPDIQEVLNEGEKVLQRHSRAPSVCDSVSIAMPDPGHPPAPGPPAESEQASAKVPTPNIYPSLTE
LKAPVRSEPDEVLPPEDSSSLEEEAAKYHNPDWPPLHAAHSRPPPYAIAPPFCAPVFXFDSDIANATENAKTKLCREVAS
LKDLLLKKREHLTLLRELRALDLELTRSLPEPTPLKIETKKNPKTETKKKNPLKPFKRSQSHGSKxPRPPRPEGTAGEDN
ASDQGENPPPSADEASDNENEVSGDSDGEKEEVRHQQYRRLGFKHIKELKTAATLYGPAAPFTLSIIETLSDRWLTPNDW
YLVARAALSGGDYVLWKTEFVENCRETAIRNSESKTSKTWTKDKLLGHSPYDTNEKQAKFPPGLLAQIQNAGLKAWKQLP
PKGSATTSLAKIRQGPDEPYSSFISRLTDAAERLVGRDENESEFIKHLAFENANPACQAAIRPHRSGKDISGYIKLCAGI
GSAHTIGLAIGAALKDFTQDSRPKTCFNCKQPGHFSRECRAPRAERTPPSSLCPRCKRGRHWASECRSKTDAQGNNLPPR
QGNSQRGQPLAPNWRQTPGAIGFVPQTPNPQTQTTQELPPSIEQPQAAQDWTSVPPPAQY
>ERVB5_1_MM_env#LTR/ERVK 5797-7971  [Mus mouse genus]
KLLTRLCPEWSDRLLLRQISFLFQMLLQARILMILWLTRITTNLQLPPPKSPNNRHIPWNYTWVVLSERNDVVWATSKTS
TNIWWPASLTPDLCKLAQGAAAPWGLEYQLDLYKAPEDNVPNTQSYNPHNXLISVHRSVKPGCDNSIRRTLLQDTDFYVC
PGHHRGRSFHHKCGGKADLYCASWGCETSGAAYWNPTSSWDYITVSRNFSRPQNSLNVNPLCKNSDHVTLGWCLPLSITF
TDHAKSKDWARGFSWGLRLYQSGTDTGLTFTIKLLKEPVHAKLPVPIGPNPVLVPQPQPPKKPDPPSFTETAHTFTSETS
LAPIANPPPSIQTKNLILTLVNQTFLTLNATSPNLVDDCWLCYHSQPPFYEGIAVPGRFTPTNNSHHCRWQPGEWNGLSL
SQVSGLGLCVTRNTPPPQYAHLCNVTLAPXISSQYLVPPNDTWWVCLDGLTPCLSASAFSAENSDFCILVQLVPRLIYYH
SEEFFHLWDQSADSSPSLVHQRREPLTAITISVLLGLGAVGAGTGISSYVLSKSRDQELSVTIDRDVQRLQQGIDDLSDS
LSSLAEVVLQNRRGLDLLFLQQGGLCAALREECCFYVDKTGVVKESMRKVREGLEKRQRERERESWYKNWFSTSPWLSTL
LPSILGPLVGLFLLISFGPWALNRLTNFVKRQIDDLAAKPIQVHYHKLAMEDQETRDEVDIPSRVFPKPISTQPKKGDSR
PXTK
>IAPEz_gag#LTR/ERVK 254-1927 part of gi|1378143|gb|AAC52922.1| Gag [Mus mouse genus]
MFGLEFFLVLGALLFLFTCYQVVKAGRILDEIQDKLSEVKRRERVGTKRKYGTQNKYTGLSKGLEPEEKLRLGRNTWREI
RRKRGKREKKKDRLAEVSRKRSLCSSLDELGEPALSSSEADEEFSSEETDWEEEAAHYEKKGYQPAKVLANQLRKPKAAG
EGQFADWPQGSRLQGPPYAESPPCVVRQPCAERQCAKRQCADSFIPREEQRKIQQAFPVFEGAEGGRVHAPVEYLQIKEL
AESVRKYGTNANFTLVQLDRLAGMALTPADWQTVVKAALPSMGKYMEWRALWHETAQAQARANAAALTPEQRDWTFDLLT
GQGAYSADQTNYHWGAYAQISSTAIRRWKALSRAGETTGQLTKVVQGPQESFSDFVARMTEAAERIFGESEQAAPLIEQL
IYEQATKECRAAIAPRKNKGLQDWLRVCRELGGPLTNAGLAAAILQSQNRSMSRNDQRTCFNCGKPGHFKKDCRAPDKQG
GTLTLCSKCGKGYHRADQCRSVRDIKGRVLPPPDSQSAYVPKNGSSGPRSQG
>MMTV_pol#LTR/ERVK gi|9626967|ref|NP_056880.1| Pr160 gag&pro removed [Mouse mammary tumor virus]
MIGAIESNLFADQISWKSDQPVWLNQWPLKQEKLQALQQLVTEQLQLGHLEESNSPWNTPVFVIKKKSGKWRLLQDLRAV
NATMHDMGALQPGLPSPVAVPKGWEIIIIDLQDCFFNIKLHPEDCKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSPTLC
QKFVDKAILTVRDKYQDSYIVHYMDDILLAHPSRSIVDEILTSMIQALNKHGLVVSTEKIQKYDNLKYLGTHIQGDSVSY
QKLQIRTDKLRTLNDFQKLLGNINWIRPFLKLTTGELKPLFEILNGDSNPISTRKLTPEACKALQLMNERLSTARVKRLD
LSQPWSLCILKTEYTPTACLWQDGVVEWIHLPHISPKVITPYDIFCTQLIIKGRHRSKELFSKDPDYIVVPYTKVQFDLL
LQEKEDWPISLLGFLGEVHFHLPKDPLLTFTLQTAIIFPHMTSTTPLEKGIVIFTDGSANGRSVTYIQGREPIIKENTQN
TAQQAEIVAVITAFEEVSQPFNLYTDSKYVTGLFPEIETATLSPRTKIYTELKHLQRLIHKRQEKFYIGHIRGHTGLPGP
LAQGNAYADSLTRILTALESAQESHALHHQNAAALRFQFHITREQAREIVKLCPNCPDWGHAPQLGVNPRGLKPRVLWQM
DVTHVSEFGKLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYMGIPQKIKTDNAPAYVSRSIQEFLARWKISHV
TGIPYNPQGQAIVERTHQNIKAQLNKLQKAGKYYTPHHLLAHALFVLNHVNMDNQGHTAAERHWGPISADPKPMVMWKDL
LTGSWKGPDVLITAGRGYACVFPQDAETPIWVPDRFIRPFTERKEATPTPGTAEKTPPRDEKDQQESPKNESSPHQREDG
LATSAGVDLRSGGGP
>MMERVK10C_gag#LTR/ERVK 462-2132 [Mus mouse genus]
MGNGQSTPLVGPVQALLKERGLKISESTVSGFLREIDRLAPWFAPTGSLTLPSWEKLGKDIAREEVDGKVKAGTRPLWKL
IKACIQDKKCELAVKEGQRLLQEQQESMSETERNEKESARRKISKGREIKGEKEKKPKCKDTKDRIKXKEQKIKSIYPPL
EDFELLELSSSEDSELSEGEEKNLEEAAAKCKAERSGPIGRSISAPPPPPPYTDKKTIGYGHSFCTPKGLQKICQAFPVF
QDHAQQRYYEPISHKQVKELAESVRTYGVNASFTQSQIDRLAHNAMTPFDWMSVVKACLTMGQYLDWKSIWHDLCLSQAR
ANATAGQQAWSFEMLTGQGIWTNNQLGYPVQVYDQINQAAVKAWKALPNRGEVSGNLTKIIQGINEPFSEFVARMMEAAG
RIFGDSEAAMPLIEQLIYEQCTKECRNAITPWKGKGIQAWMKACREIGGPLSNAGLAAAVLMAQTKEITCYNCGQTGHLQ
KQCTKSRKSRFEKTVPGICPKCGKGRHWANECRSVRDIKGRPIPQFKGQQPKNGVRGPRPQGPQMYGAFQTTVSMRP
>PlatERVK2b_gag#LTR/ERVK 102-1829 [Ornithorhynchus]
MGAEKSLPVFKPDETELYVRYCYKILKERGVNVHLKEIREFIGKLTMICPWICHSGLTGDQWRIAGEQMTAYEDSSPGEL
TDHDFLIYGILGAALNGPERKPRHFNVASQTEDAGETVQPPPPATPTPSYHRLYPDLSSVGAPSGVVLETRGTAEQSGAA
KSXSMAQSEKEAEMTRLRRRLAELSMGSGLKRDSRERGVGAEARAGPPGTAMQMALEEGRRLGEDTGSWDAYPVIQDGDG
QRAFQPIAWIKLKELKSACSSYGPDSPYVQQLLENLTLESVLTPNDWKSLARGCLDPGQSIIWMSEYTAAAKDMVKRRGF
HNPAEDFSILAGTGPYETTEAQLLYDPPTYVLVGQLALTAWSKVPQKGDRRLPMTQIKQGPGEPIHDFVSRMQQAVLRSI
GDNAGAEIVLKQMVRDNANPACKKAMMGLPKDAPLEDILSRCEGMGGEEYKAQVLAGAIVKGLRGGMSEQRKCFRCGKQG
HLKAQCRVGGSPSVGAREGGAPTCFECGKPGHYAKQCRQKRHRQQSGNWRGGPARAPHAYPVTQSEPKDSLLQEYRELQT
QEPRGQLSGAWTMLK
>RNERVK3_pol#LTR/ERVK 3091-5712 (renamed to ERVB4_5_RN, but "new" consensus is poorer) [Rattus]
RRFRSRPFFIETAVPPALQADKISWKSNDPVWIDQWSMPQEKVQAALQLVQEQLLQGHLEQSTSPWNTPIFVIKKKNGSW
RLLQDLRAVNKTMVPMGALQPGLPSPIAIPRDFYKIVIDIKDCFFSIPLHPEDCARFAFSIPVINHVGPNPRFQWRVLPQ
GMANSPTLCQRYVAQTIDPIRLRFPSAYIIHYIDDILVSSACLQETQKLAQIIVLALQKRGFTIAPEKIQTQYPFLFLGF
QLEPTSIYSQKLTIRRSQLHTLNDFQKLLGDINWLRPYLKLTTGDLKPLFAILKGSPDPNSIRVLTPEAEKSLLKVEQAI
SQQFIGYFSPSKTLYLILFATRFTPTGLLWQDNHPLMWIHLPATPPKILPTYPSLICQTIFLGLKLATRHFGRDPDIIIS
PYSQEQLAWLQHRHDDWTVLLSIYQGTFDTHLPGDKLLQFLHVTPFVFPKVTQLKPIPNALTVFIDGSKNGKASFVVKDQ
VFFVHTPYASAQLVELYSALEIFKLINQSFNLFSDSHYVVRALRVLETVSTIQPSTPTFKLFSEIQKHIRARPNPFFVGH
IRAHSNLPGPLTKGNDLADRATRLTMIASLSDSLQEAQMAHSLHHLNAQTLRLKYKITREQARQIVKNCKNCLTLLPEPH
IGVNPRGLIPGEIWQMDVTHVPSFGKLKFVHVTIDTFSGFICASAHTGEATKDVIAHMLYTFSVMGQPKMLKTDNGPGYV
SHKFKQFCSQFQIKHITGIPYNPQGQGIVERAHQTLKNTLLKLTAQETLYSLKGSAKFLLSHALFVLNFLTLDNQGRSAA
DRLWHPSTKMDHAHVLWKDPLTGQWQGPDPVIVWGKGSACIYNSKEGGARWLPERLIKLYNKFQTNSKIDKAL
>RNERV14_gag#LTR/ERVK 154-1806 [Rattus]
MGTTSSSLLVVDQLVSLLKQQGTGIKVKTAQDFVKTIEQVSPWFIASGGLNIPDWKQVKRDLQKALQDGGSESIPIATFS
LWRLVKDALLSENARVEEQMMEIERTFGTAQDEHTKESICRDSSDSDSTSCESDADEEITLEREIEKLRGKLRKCRNQRK
KGREELFPPLEPSPPPAYDDYLFDEERRIVTSESPLRGVIFRPSRSKNIYPVMEVPNPGHPDQMXRQHIALSFKELKALK
EAVSSYGALAPFTMAMLESYTNSNLTPSDWQQLCRAXLSGGDYLLWRSEYQEQCLATARLNAQAGHGNRNLEMLTGTGQY
APLHIQINYDPAVYLQIATAAIRAWKSLPNKAAGDQLSRVIQGPSEPFQEFVDRLLQLAGKLFGDADTAMPVVKQLAFEN
ANKYCKEAIRPHRSKSLNDYIKVCKEIDGVYHMGQVMAAAIQKGDHRSKTCFSCGQVGHFRRECPKNKVINGPGXCPRCR
KGHHWRNECRSKMDVEGRPLPPSGNGRQGPLRGPQTRVYXAMNTAASHPIRFPPQNNPFMSKTLSEAPREV
>MacERVK2_pro#LTR/ERVK 1746-2660 [Cercopithecidae]
PSNLRIGKLAEGPFSLGPQQQYKPSSFAISNQLGGPASAGQSVNVNPQFSLTQLFSATSGSAAADVSILQAVELTPEMGV
VKLPTGVFGPLPPHTVGLLIGRSSSILKGLQVHLGVIDSDYKGEIQIMAQAHKPISLKEGQRIAQLLLLPYFQFPSRRQE
RTGGFGSTGKHIFWETLVTQQKPLFPLEVEGQIFQGLVDTGADVSIIASDQWPLQWPKQPVAVSLTGLGSASEVYQSSQS
LSCRGPDGQMAQVQFYIVPIALNLWGRDLLQQFGAFVSIPHVSNSAKNMMFRMGYNPLEKSLNT
>IAPLTR3_pro#LTR/ERVK 2254-3060 [Mus mouse genus]
PRRVTGVDLRATSSFLLMPQMNVQPILVKSPGPLPPRTMGLIVGRGSLTLQGLVVHPGVVDHQHLQDIQVLCSCPQGIFS
ISPGDRIAQLIFLPSPDKDEDNIKELRGMGSSGPDSAYLVMPLNARPTLHLFINDKDFEGIMDTGADKSIISSYWWPKSW
PVTKSSHSLQGLGYQSCPAISSSTLTWQTSEGQRGLFTPYVLPLPINLWGRDVLSEMGITLTNEYSVQTTNIMKKMGYTK
GKGLGSKEQGRLEPVSHNGNPGRRGLGFS
>IAPEz_pro#LTR/ERVK 1927-2807 part of gi|1378143|gb|AAC52922.1| Gag [Mus mouse genus]
LKDMGTGLSGPRKQSERRPRKTHKVDLRAASDFLLMPQMSIQPVPVEPIPSLPLGTMGLILGRGSASTLQGLVVHPELWI
VNIPQKYQVLCSSPKGVFSISKGDRIPQLLLLLPDNTREKSAGPEIKKMGSSGNDSAYLVVSLNDRPKLRLKINGKEFEG
ILDTGADKSIISTHWWPKAWPTTESSHSLQGLGYQSCPTISSVALTWESSEGQQGKFIPYVLPLPVNLWGRDIMQHLGLI
LSNENAPSGGYSAKAKNIMAKMGYKEGKGLGHQEQGRIEPISPNGNQDRQGLGFP
>LPDV_pol#LTR/ERVK  gi|607779|gb|AAA62195.1| Pol precursor [Lymphoproliferative disease virus]
FSLRATVLLMERSWAIPLEWHTDVPVWIEQWPLTAQKLDAVQNIIQDLLKDGRIIPSRSQWNSPIFVIQKKDKSKFRMLH
DLRAVNALIKDWGALQPGTPWPGAIPSEWPVIAMDISDCFFSIPLAERDSERFAFTIPSPNLREPAKRYQWTVLPQGMKN
SPYICQQVVAEVIRPIRERFRDAVIIHYMDDILIAAAEERQTEVIFEAVKTTCHEKGLKINEAKTQRAPEVSYLGWRVME
TGIAPLTVQLPETVTNLVQLQRLLGIIQWLKPILSLRPEQLQVFYDLLKGKTRPEEPCRLTEEAQQELRNIQQRLQASCV
GRWRSDLPITLFVCTTAAGGIGLIAQQQDQRIQPLYWLSSTRLTRAWTSASRVLVLLIRQGSQICAQYWGQLPDKVMIPM
TTEEWELFSSANDYAIASLVEIGPRICPAAADPIWPSLSYLRPVAPPITDTPLVGRTVFTDASSQTAMAVAVWQENGRWK
KVTECSPGSSVQQLEARAVQLASDAFPTEALNVVTDSLYVARLVSRMATPGWPDLASPWLYNSLSRRTAPLFICHVQAHQ
SLEGLHTGNDAADRAAKGLWPLQEAVQKHAFLHLGAKALAQECNIPLTEVERLVKSCSHCQKTPLWMAGVNPRGLEPNQI
WQTDFTMYPPFRPNHWLAVTVDTYSGVIVATAHRGTKSRHAIHHWTAAIAYLGRPSVIKTDNGSAFTSKAATAWAQRWHI
TLKHGIAYNSQGQAIVERANRTLKARLEALGEGEGWGARVPPEHQPELLYRALYSMNFFARSTEQTSVARHWSHQRLPIG
PAVLVRDHLGAWQGGWHLMTVGRGYAVGQDGTVKWVPARWVKPR
>MacERVK1_pro#LTR/ERVK 1707-2624 [Cercopithecidae]
KWECIVTPLGKREPGPAGLGPQQLQCRPTPVPSEQWLTTSRNDLESSLKTSYPTPVSQLYAATKQSAAADLAIVQPYTLS
PNGGIYKLATGVCGPLPKGHVGLLLGRSSSAMRGLMVVPGIIDPDFTDEILIMVQVSQFMRLEAGERIAQLLLLPFFPFL
SRDVSRQGGFGSTGKTVFWETLVSDQKPLCSLQINGILFEGLVDTGADVSIICLAQWPDHWKKKQVSVTLSGLGTASIVY
QSVEPLSCVGPEGQQGKVFFYIVPININLWGRDLLQQFGAFLSIPHISSAAKNMMFKMGYNPLNS
>MacERV3_env#LTR/ERVK 5476-7236 [Cercopithecidae]
ISLRSSFLLVFQKMKPNMRFLWRIIALYNIVTVYAGFGDPRKARELLRKQYGQPCDCRGGQVSEPPSDRITQVTCXGKTA
YLMPNQLWKCKSTPRDTSPSGPLLECPCSSFQSSVHSSCYTSYQQCKSGNRTYYTATLLKTQTGGTNDVQVLGSTNKLVQ
SPCNGQKGKPVCWSTTAPIHISDGGGPLDTARIKTVQKKLEEIHKALYPELQYHPLALPELRDNFRLDAQTFDILNATYN
LLQMSNTSLAHDCWLCLKMGPPIPLAIPNLSLPYVNYSNESLVNNSCPITPPLLVQPMTFSNSSCLFSPSYNNTKEIDLG
YVVFGNCTSIINATNPLCAVNGSVFVCGNNMAYTYLPTNWTGLCVLATLLPDIDIIPGDEPIPIPAIEHFIYRPKRAIQF
IPLLAGLGITTAFTTGATGLGVSLTQYTKLSNQLISDVQTLSSTIQDLQDQVDSLAEVVLQNRRGLDLLTAEQGGICLAL
QEKCCFYANKSGIVRDKIKTLQEELEKRRKGLAANPLWTGLDGLLPYLLPFLGPLLTLLLFLTLGPIILNKLMAFVRQQI
EAFQAKPIQVHYHRLEMTENGESYLP
>SHALINE8_MT_pol#LINE/L1 2478-5893 via tfasty with ATLINE1_12_pol, 1 frameshift. [Medicago truncatula]
MSIIVWNCRGLGNLRVIPKIKFLVRYYKPDILFLCETMVDNNKIEEFRYLLGFDFSIAPTRNNRGGGIALFWRNTVNCSI
INYSTNHISAKIEEVNQSKWVFTGFYGYPDIARRRDSWNFIRSLANQISLPWCIMGDFNDILHSDXXXGRATRPNWLIKG
FRQAIQEVELIDIHMEGYPFTWFKSLGTTRAVEEKLDRALATNPWMQLFPNARLENLVAPSSDHFPILLDRTPVIRSHRV
ERSFKFENAWRIEDGVNDVVQGSWLGSTGHNVMEKLASCAEDLTHWSKTHCHKIQTDIEHCRKQLHRCRTTHGIQDETYF
DNMRKKLDHLLVQEDMFWRQRAKKHWYRDGDLNTKFFHAAATSRKKVNKILSLENNEGVRTSDEGGMRVIAKEYFEELFE
SYESTCSPVTNMLNQVVDHEDNVQLTAPFCREEFRDAMFSMHPDKCPGPDGFNPGFYQHFWSICSDDIFNECCQWMNEGQ
FPSSLNSTNIALIPKGVEQKTMKDWRPIALCNVLYKLLSKVLANRLKKILHKCIADSQSAFVPDRSILDNALVAIELVHY
MKTKTKGKEKSVALKLDISKAYDRIDWAYLRDVMSKLGFSAKWIQWIMMCVETVDYSVILNKEKVGPIIPGRGLRQGDPL
SPYLFILCAEGLSALIRNAESKGDLQGVRICRTAPRVSHLLFADDCFLFFQANLNQANVMKQILLQYEEVSGQAISLPKS
EIFYSRNMDDQLKQSITNILGVRAVLGTGNYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKSVLQA
IPSYVMSIFRLPHTLLDEIEKMMNAFWWGHGGSRNRGMNWLTWEKLSVHKNDGGMGFKDLAAFNVAMLGKQGWKLQTNPD
SLVSKIFKARYYPNSSYLEAKLGHNPSFVWRSIHSAKVVVRQGARWKIGTGEHIPVWDHPWLSNVARILPSTHHQLEWPS
ITVSDLLIIHQKQWNMELINTFFDADTAKNIFNTPLLPQVTHDRLVWKFERNGNYSVKSAYKDILNHDMAIVQHRVPGNW
NGIWRLKVPPKVKNFIWRVCRDCLPTRIRLQSKGVQCTDRCAMCDDFGEDSNHLFFMCSKSMLCWQRTGLWSPLMAVFDI
NVSFPTNVFAILQHLDQQQ
>RILN3_OA_pol#LINE/L1 2-1167 via tfasty with 50901338_Osa, 5 frameshifts and 2 stopcodons.  [Oryza australiensis]
WNVRGLNNVTKRDQIRECVCSGGASLICLQESKLDAVTHSDVFQFSGPDFDEFVALLAQHTRGGIVLAWKGSLFKGSLIH
QGNWSITVKLECIQGQRSWCLTTIYGPQADSDKLVFLEELREVRNLCQAEWLVIGDFNLIAETADKNNSRVNRRMMNAFR
NTLNRLELRDLYLSGRRYTWSNDQRNPTLVKLDRALCRLSWEEMFPEARLAQGLSSSTSDHCPLLLTCGDSVQWRRRFxF
ETFWTKLEGFDDVVRExGQQGIQSQDPFILLHSKLARFSHALTIWGQKSISRYRLQIQIASEIILRFDLAQESRVLTDLE
RQLRALCRGRSLALASLERISVRQRAKVRNLKKGDAGLAYFYLKIRSRQRKLFILTLEHERRIETSHIP
>TREP52_pol#LINE/L1 2913-6198  Using ORFs and estwise with CINR4 ORF2 pep TREP53 close. [Hordeum vulgare]
MDHGLKIINWNVRGLNTRARRTAVRSLVVTSSASITCFQETKMEFVYSSAVLETLGSEFDEYVYLPANGTRGGILLAWKS
LDVMITDPMFITTNNISARVRTTGSTSLPWWLSIVYGPQDNNAKIAFLQEIRDVRDVRDACPGPWLIVGDFNMIYRDEDK
NNDNVNRSMMGRFRRILNDLALKEIYLSGRRFTWSNEQNPPTLVHLDWVICSTDWEERHDECHLRCLASVVSDHSLLLLD
FSPLPATRRRFHFEEYWTHLAGFSEIVPASWHSVDDADPFQWFMRRMQATARKLTSWSARSVGNVRDQLAISCELLLCFD
AAQEXRALSTHEDWLRRQLKLSYLGLASLERTIARKHARIASLRDGDANTAFYHRQCXYRKQKNRIHSISVDDAAITDPA
GMAVTTFEHFDNRIGTDXSVTELLTCCNSSSPXNLEDLDAPFSEDEIWRAINSMPSRKVPGRDGFTVEFLRSCWHIINHD
LRSVFDQIYALHGRGFSCLNQALITFLPKRAEATGLGDYRPISLIHIVAKVLAKLLSIRLAPRLNNLVSNVQNAFIPGRS
LHDNFILVRQSARVLHQLGAPRVLLKLDLARAFDSVSWPFLFEVLRCHGFGSRFLGWIALLLSSASTKVLLNGNPGPAIW
HRRGLHQGDPVSPQLLVLAVDTLGRLFHRAVELRVMQQLHPRRAIPAISLYADDVILLCHPSPDDIAAVKEILQLFGRAS
GLHVNFQKSAAALIRCDTEDAAHIVAHLGCPIVDFPLTYLGIPLKLRRPTAGQLQPVVDKVAGKLPSWKAWLMNKAVRLA
FAKAVLSAIPIHQLLVLALPKKTIKLLXKIERGFLWAGRAEAHGSNCHFNXRRVCRPIQFGGLGVHDLERTGLALRMRWQ
WLSRVDVSRAWSGLDLHFAPEERALFFASTTMAIGSGQRALFWEDRWINGLAIREIAPLLFDLIPKQRRKSRTVADGLHE
NQWAADIHGIIGIPEIGEYLRLWHAMAKTVLTDAPDNIRWKWTTNGEYSAKSTYLATFHGSARCQAWKLTWKCLVSVALL
IPWMISKHRNGCVFEGATPSATSLAATIKEEAGLWARAGALGLQAILPQTWDVH
>KibiDr1_gag#LINE/L1-Tx1 gi|34392559|dbj|BAC82608.1| gag-like protein [Danio rerio]
MAAPGSGSFNELTRRHGVKIDSTASIEECGLAVGEEVGHDNILSASRMNGAVVVFVKTVDLANLLVQNGIVINGIFTPVL
PLSTPSKKVTLSNVPPFIPNEVLTNLLKRYGKIVSPIKMIPIGTKSPLLKHVVSFRRYVYMVLQEHLDELDLSLNFRHED
FNYVIFATTNNVKCFNCGGYGHLIRGCPNKVDNKSNEATLPVATDESDARQENQTAAAQVVEEEAPGPSSGQTAAVLTEP
GNIEERESVDRAVDEEDMIVTGDEMNEVENVSTAAEAVVSELFDQREGAIAELDDNLFKTPQKRRREQCPLNERAKRGAG
DEPGQTDTESERDFSECSVSFSLPLSGYSSKNYTAHEIKTFLKDTKNARNIRIEQYFPDVRQFIDKVRIYRNEGCFNKQE
VFRLRKFIGKINEEMESSASNEN
>Ag-L1-5_pol#LINE/L1-Tx1 1159-4377 [Anopheles gambiae]
MANTTTHSNITEFKKSYRIGSINICNISNTTKTDALIATVKKLDLDIICMQEVNDSSLEIIQGYELITNIDERQRGTAIA
LKQDISFTHVEKSLDGRIISLCFGRTKLINIYAPSGSQNRIQRERFFQQSLAYHLRHPVENIIIVGDFNCIIDKKDALGT
SNYSPALRNAIDNLNLVDTWNLLKNDPEFTYITSNSASRIDRIYISRNLKENLRSVDIHSVSFSDHRAYVIRLALPNNNQ
QIITRQKLWSYRKYITTQEIQNEFKENWIRWTRQKKHYGNWLTWWIKYAKPKIKSFFLWKTKMHYKEYNQTHDRLQSRLN
ESYSKLVNNPDEKITINRLKAEMLTLQRKLTQNFIKENNNYIAGEPMSTFHLFKRRKNRNFIKKLRLNNRTLENEKEILD
AIQEQFKLLFSGNDNCLNSTPIIPRKIPEACVLNNDLTKEIETVEIFHTIRTATKNRSPGLDGLPYEFYETFFDIIHKEL
NLIINEALDNDIPPEFVEGIIVLIPKDNNTFEIENWRPITLLNADYKIFSRILKFRMKNILDTHNILTSSQKCGNGKNNI
FQALLSIKDRIMNLKEKKIAGKLISFDMEKAFDRVDHTYLYKTLTAIGFKENFITLIKKIYSVSTSRLYINGSLQEKLHI
KRSVRQGDPMAMHLFTLYIHPLLCKLENICNSQNDLVNCYADDISIITTDLNKIFNIKKAFEEYETESGAKLNTNKSLAM
DIGVVNNQNRINTEWIENREKIKILGILFTNSFRLTMKLNWEATTHKFAQLVRQHRMRELNIQQRVILANTFLTSKLWYI
GSVMTISKYHLGRLTFYLGIFIWSNGGPRVKMQQLALNKAKGGLNLLIPELKLKTLLINRHLIEKQHMPFTKSFLNQIEN
PPNIKDLPSFYPCLVPIRTELAYLNDRYKNNPSAKEIYKKVTDSLPLPHIQSKTPSLHWNKIWRNINNNKMNSKQRSYYY
LLVNEKIMTEEIKFKFGMKTNPNCEKCGNIEDLEHKFKDCKNIKNIWILFTQIVKDELHIKPNFHELIKPDMNNIKKEKR
AKIMSLFINYLIFIYKENFTNSIGKNQLKNIIC
>RILN1_OA_pol#LINE/L1 62-1712 via tfasty with CIN4E_ZM_pol, 2 frameshifts and 4 stopcodons.  [Oryza australiensis]
MCLRRMSIAVCMDSSSLSHMSRHLRQYSAGQCRRVSKLILRTYRFASECFIIAGSTHFYSKMNPSSILIWNARGLNRKDR
RNSVRDTDFILSSNADIVCLQKTKITSMDQCLFLSIIGSSYDKFVALSAIGTKGGILISRKSSTCQAIATRVDSFTVFVL
FSKQEGRNWxFTGVYSPQEDEENRLFLQELRNIQGMCNGPWLVAGDFNLIYxAADKSNANLDRAMMGRLQRFLDDTELKE
LTLFGHKYTWSNKRRSPTLVRLDRAFCSLDWEDIFTDLVLQSAASGVSDHCPFILGLKIKTSGKSRFHFESFWTKVSGFL
EAVQQNWEAPVHSNCAVGRLFIKLHRLSKGLQKWGQRKIGNIKLQLKMAKEIIHTLEIARDSHELSNSEVMLRKKHKHHC
LGLASLERTIAHLRSRILYLxEGDANTAFFHQQSCFKKKKNFIAKLQVGDRVVTSQEEKQEAVLDFLNxLIGTAEEQNFS
IDLEAIGKQPRDLSPLDNPFTEEEIWATIKNLPLDKAPGPDDFMGRVYKFCWHIIKEDVLAAFHDIHHRTC
>LINE1-39_ZM_pol#LINE/L1 2940-6542 [Zea mays]
SFCCSALVVLPVLMDPEKILIWNVRGLNSSARQNSVRELVSSSRADIVCVQETKLTEVPRRTLLSMLGSDFSNFLVLPSL
GASGGILVAWKHHLGSTGLNRIDDHSISVQFCTQEGQAWWLTCVYGPQSSEEKVQFLQELRNVRAACLGPWIIAGDFNLI
YKAEDKNNSNLNRAMMGRFRRTIDDLSLKEIPLHGRKYTWSNQQNIPTLVKLDRVMCSTDWEDLFPNVLLQSSASEVSDH
CPLLLGLRDNRSGKRRFHFESFWPKLDGFQEAVQEAWNSVPALECPFQALDRKLKATAKRLQSWSDSRVGHVNSQLALAR
EVLHRLEIAQDARSLSLSEIWLKNKLKKHSLGLASLKRTIARLRSRVSWLKEGDANTKLFHMHARHRKRKNFVARLVADN
QVFTGHNEKAILMDQFFSNLLGVSIDRDCSVNLEAVGVPTFDLAALDLPFLEKEVWETVKLLPSDKAPGPDGFTGGFYKA
CWSIIKGDIMAAVSAVWSRRFAQFNRLNTAYITLIPKKEGADQVKDFRPISLVHSFAKLITKLLANRLAGRLNEMISPIQ
SAFIKGRFIQDNYMLVQQTARLLHRRRQAHLLLKLDITKAFDSVSWPFLIEVLQRMGFGQIWRDILCGLLATSSTQVMVN
GFPGKHIVHRQGLRQGDPLSPMLFILVMDVLGRMVTAAEGAGLLQPLATRSVHHRVSMYADDVVLFLRPAAEDIATIVDI
LHLFGEASGLHNNAQKSNVYPIRCDESDIAVVQGLLPCGISSFPCKYLGLPLTLRKITKDQAQPIIDKFANQLPGWKADL
MTRAGRTVQVRFVLTGMLIYLAMAIDLPTYITKAIDKIRRGFLWRGRKEINGGHCLVSWSKVCRPLDLGGLGISSIMELS
WALRMRWLWLQKTEPNRPWSSLTIRVPDKVQAFFSMAMQTEVGNGANTLFWKDRWLQGQRVADIAPRLLQVVPKRKINTR
TVQEAITGRAWMSDIRGALSVGAIVDYLHLWNLLLTAELRPNVEDKHIFRLAANGKYSAKSAYEGLFIGSIPFEPYERIW
KTWAPPKCRFFMWLVAQKRCWTADRLAKRGLDHPDSCPLCEQESETIDHLLVSCVFSRECWFLLLRQFGLHNLSPQPEND
SFLDWWRTISEMAAGQMKMGINSLVLLGAWILWKHRNQCVFEGGSPSVAAVLEQVGEERRLWEMAGAKGLIFLAANLPHG
>LINE1-16_SBi_gag#LINE/L1 260-3196  [Sorghum bicolor]
MPSYLEAATKGAPRQAPSPADLPGGAPADSQGPGETVAEASHGALSKTQARRKRRARTIARLKGEAEGRTASQTAKLTGA
AAPGQRIPATQRVGSQAAQRATTHRRLGKQRRATTPDRDGWQLVLHRDEDRPPPRKRKERTPPPRGIPPEYDGRCLNCLS
FNHKIATCNRPRLCARCRSPRHLAKDCKRPPVLAAAGGAPDSRFVRARRGGSSTPQGSAAERAVTPPDRPRPRILDDSCE
DPCSEFADGVPPGHPAFRPREAECYIQRDDAVNSAEASMQLALVAQPSGDPGHHTTSEVLLALVAAAGVRAEDIRVKKFF
PQRFIVLCASEAIKDRVLATSPAPFGVSPLILLPWSRVANADLTTLYYKLTIELEGVPPHVWREETVAKILAPYCWIQEV
EAVTAVADDLSAYKLTAWTANPSNLPKIIWLSVAEPPADAIQGEGFRFRGTTPFLNKKDMLRYKVIVHLRSVRDFDPPTS
SDDSSSSDDPAEEGRNRKRHRDARGAGVRLHPFPCHRGTPDGTPPTSNAIGDHGRQHPAGLKPRRRVPATERVGPNAVPR
VAVHDRLGTRGPRQRVPATSRVGPNAQPRVPAKERICFGQQTQHGPKQRKQKWQEVKKQPLRPAWQPKTQTRPDAGRQSS
GTTTNSIAAASPAPDAAATYQKGESSTSIVATPMPEQDKQEQMTTVHLQMECKAHQHDDTSEVQPIASEPALQPAACTPE
HQPAARDVLREGTATREGAPGELVPRDTQAAALGAAPRCCTQAPSVACTGPPEKIGLSSTTHLPFLEAQDKQTEPAMGLP
ELEPTEAARSDGGRHEQAIGQLAEEDREHSLVPDSEQGADQNTPGRNALGAKPAATPKSTPSAQKRFKVFARRVKKAKTS
PLLSKPPPMESTTPRPQIKRSRRIAAQSLSRIPTAKRGEYLVLKRLGHASALNEESAPGKFEALFSGNPEDEEALRELFP
VGCLDGHSRRRRRAPRSRP
>LINE-6_OS_pol#LINE/L1 1217-4750 [Oryza sativa]
MSQDNVYLFNWNVRGLNSKAKQDAVKIILQQYGATIVCLQETKIASLNDRVVLNSLGQNFVRQYVALPADGTKGGLLLAC
NENFFSLSDVVLGQYSLSATVTMREEGLQWSITVVYGPQLEADKVVFLSEIESLQPSMKSEWLIIGDFNLIYKASDKNND
RLNRRMMQRFRGLLDKIQVKELQLPGRRFTWAGEGANPTQTKIDRAFVTTDWDLMFESSNLYLLSSACSDHAPLFLVGNE
KRSKFPSFRFESFWLKIPGFLEAVQDSWQRPILATNCLAIFRIKLRRLARDLKRWSRSQVGDIKLQLAVASEVVFQLDIA
QETRTLSDDERLLVSNLKNRILALSVLNKIQIRQRSRQTWLKEGDVNSKFFHIKANSRRRKNYIQSLHTPSGIAISAQDK
EEELLRFFKERIGTRFQRTSGINWNMMDLPSLDLGDLEEDITEEELKKTVFSMPPEKAPGPDGFIGAFFKSAWEIIKEDL
LSAVRSFFDLNTLQLKELNSAFICLLPKKEDALGAEHYRPISLIHSFSKIISKILANRLAPRLCELVSPNQSAFVRKRAI
HDNFVFVKNMVQYLHRTKKTSLFIKIDIAKAFDTVCWPYLLEVLRQFGFGNRWLNWISNLLATSSSQVLLNGSPGQSINH
VRGLRQGDPLSPMLFILAMEPFHRIIKAAENASLLSPMGGSFDRFRCSLYADDVAVFVKPQASDLSVLMRLLTFFAQTSG
LHTNISKTEIYPIRCENINLVSLLANFPGMVKQFPCRYLGLPLHIRKLRKIDFLPLIEKIGSRIPGWKGRFFTSAGRKTL
VQSVLSSMPIHHFTALQVPKWVIKRIDRFRRSFLWKGEDPDKTNPGSSLVNWQTVCKPKILGGLGILDLERFSRALRLRW
LWLGWKDENKPWAGMSVPCDDTDKRLFQAATTIELGNGTKTSFWHDNWLQNNCPKDIAPLCFKLAKRKQKSVQQELHNNN
WLISFRQITSVEEIHELVHLGSMLQGVLLTPRPDDISWNWNESKVYTSKSAYLFQYQGSFVSLDFSSLWKAPAEPKLKFF
GWLVLHQKTLTAQNLLRRHWPCNWICSLCTSAFEDTNHLFSECPFFKEVWSLVTSWQHLPTNNVGLSIGTSDWWAQIDCV
GSKEQKKAMRGALLTTWWNVWLERNRRIFNNISTSERAVAYIVKQDLDLRSSAFRPP
>OSLINE1_1_pol#LINE/L1 1-4123 gi|31433057|gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa]
MEPNKLVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAVSCEGLSGGLALFWTTA
YTVSLRGFNSHFIDVLVSTEELPPWRISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSE
PHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRN
HGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWSKASFGSVRRKILKMERKLKS
LRQSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEG
IKRMAEVFYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILE
EHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGR
LITDSALVAYECLHTIRKQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTK
PVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRS
YCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLS
RAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAM
LGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRP
QLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEA
FFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNRDDTVEHVFLFC
PFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYVD
MILKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEAL
AIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHSLARNAELS
TCTVYRSVIPDYIRDILCDDVA
>LINE-7_OS_gag#LINE/L1 40-3192 [Oryza sativa]
MRGRGERGDLAGDGPTTAAVTSGGRSSALTIDLPPLLPSPAGISKLRLPSPARALNLSQVRPGEAFQNLILHLFHCPVTP
IATTLGPSKIIPTPIWLCAAPSKPLNSLYVKNALNFWFSSSFSSFSVSSLGFGLFLSHVANKDVATSLFLAGSSVLKSAG
LSIHLTKDSAAKDIQENVTRFLVQFEGSSSVPSLVGEKVVPALQTVKPAFTATSRHIGCSQQSSKTSTPSVPTGPALKSV
YCPVTNSFRDALLSQPKPKPPARSATSRLPSRGRKNLTMLNRCFRCLGSDHQVKDCRDPLICASCRRAGHRQDSCRSSMA
SNISPRRSSSSFHPSTANSTSRFTTRWVRRALNTPAPPPPRLPTAPYPRSNHSSPPPDNLAIVPYVPPLTHVDAQLEDVI
AMLESSLCSSPVRSVTAGPLVPMEVSENAVTSSVASPLPDVRNALVCVQDSSISVAALVPVLACAVNDLETVSTEVVPAT
VSLVSVMPTRAAAVAEVAHATVESVVVPSSVSEDLSPAVNLSSMPPRLRCKNKGFLAWYGACPSSRQPSSVPPQEPRDIF
VCSEQLSANPILSPPQDPDSTRSPPPTLSGPSAAEQIRRALAGLSPEGSIHSASLSPGRVPVITSNDTTAAQDFAFGEPD
PVNISGDSDDDILDIFIPFVDMRVTAHYATAYVTPPCECPGRVIRKAMQDAHPRFQFTLISACRGAMTLRFIHSQDRDFA
VDHQENLTAEGHLVRLERPEDSAARFIQHNTMLSELDCIDFPPEMLFPNKIRNAFENYGELMEVDDQCLYGDEQSSLRLV
VLHYPGKRMSPRFRLRYNLGIVCTVYVRVLRTWELAMNVDEDGNYIKHYEQFLFPHQLDPPRSGPTVGPEAELDNLNQAP
SNQISNNQGLQNRGRLLAILPAASTVFIEEISDTPEIFVPPSIHSAPSSIHDCLQDLVPSDTENEHELSARKRRRQKKRT
IDSDVKRRYSERLAAKEGHLYISMESKAARAKKLKEQLAKCSSKLNDAVHKHNLLDLNFKTTPKALEDLAIACSLNDHDI
AQLRKVFSSVD
>KibiDr1_pol#LINE/L1-Tx1 gi|34392560|dbj|BAC82609.1| pol-like protein [Danio rerio]
MKRWSPVLVMRTSRHLYAVFCLWNLLCFWLFLAMGELNIASLNINGAREGKKRFYLFEMIKEKKIDVLFVQETHSDALNA
CDWAREYNGLPILSHLSSVSGGVAVLFSKNFIPCSYQVEEIINGRLLKIRAQFENSVFVFISVYVPTRAIERMCFLETLS
NVLANCNTEDVLILGGDFNCTESSLDRNHVEPHMPSQRRLIQLIHFNDITDIWRNFNSYQRQYTWLHTYDNLLSLARLDR
FYGYRHQLNLFKECVISPVGFSDHSLVKCSVTMGQFRPKSAYWHLNTNLLSDCTFQDIFKEFWSNFKSTKSTFCSIQQWW
DFAKTQVKQLCQQYTINVTKDRKSTIEVLENEIKAMQEKADASGDLGFIRNFKEKKNSLNNLLDLTAQGALVRSRFQNIE
SMDAPSKFFFNLERKNGQKRCIYNLLSETGILLSESSEIRKRAVNFYQDLYKSEIISDESDTSDFFNNLPQVPQDFNVEL
KKAVTLEELQKALQSMECNKVPGIDGLPAEFYKTFWKEVGLDLLQVINESLAYGQLPLSCRRAVLTLLPKKGDLNDIKNW
RPVSLLCTDYKLLSKVLANRLSDVLSHIIHPDQSYCVPGRRIFDNISFIRDILDIGKIFNLNFGLLSLDQEKAFDRVEHK
YLWNTLTAFGFNNEFVSMLKALYNDVESVLKFNGNLCAPFKVFRGIRQGCALSGMLYTLAIEPLLIKIRAKLSGLSLPSC
TNCFKVSAYADDIVVLINGQIDVTLLLELMNDFKKISATKINWSKSEALLVGNWHNAEPKLPEGLTWTKQGFKYLGVFLG
DELIMQKNFEDIIEKVRGRLERWKFLLSKISYKGRVLIINNLIASALWHRLICVDPPSDLLIKLQSLLIDFFWDKMHWVQ
KAILYLPKEEGGHHLMHIQSRVAAFRIQFIQRLLTGPVDSSWKIAACAILRGFRNLGLEKSLFWTDPQKMDWSKLPIFYR
NMFKVWSLFKVQRHGNASSLFWLLQEPLIFGSRMDLSNQGILPSVNEILLNAGVVTVGHLFKLAGPAFRNVEPVANRLGL
RSKRIVAKLLEKWKSFFTPEEANMLENYADGLIIPNCNDPFPDLYLSTDFKECEGVFLQNNVLFLMGTNSEFGKNVYNSC
VKLLNRKSLNDKVDTPWRSVLHLKENAKPEWRALYKPPLPKKVGDLQWRILHGAIAVNAFVSIINPGNSDECPFCSQRET
LYHAFMLCNRLSSFFQVLSNLFVCFGETFSMETFICGYKYTRKRRFFCQLLNFLLGQAKMAIYDTRKIQIEQNSSGCLKT
FFFNLVKSRILIDFQYYKTMGDLMCFEKIWCYKGVLCQICDENLEFMVH
>L1-55_XT_gag#LINE/L1-Tx1 574-2064  [Xenopus (silurana) tropicalis]
MAPTTAASRGKNSGKKTEKVSTGSRSAPPGTETPAQASALPPKATQSPNLEPWMRQTVVLKLREVEGKAPDMSTDVFGKK
MVMEQGFSKAETVSIQTFIGGLFYITFASMAICRRYWERVKAAGPESPFTRFVGNSPIQREERRVTVAMRNPHTPVKDII
TFLTRFCTVIRDPIQITDSNGFWTGKYSVLVKLQREESSADGLKHLPQSFSLGSSPGLIYYPDQPQTCRKCGQLGHQAKT
CTANACRICKVLGHEAKDCPRSKACNLCGLASHVYRDCPQRSRTYASVAQAKPTPSAPANNRATPAAPAKTHNKGKTPAP
AKVTPPAPAKTKNNEKKGKPPTAAPAPSPTPAPTFTPPSPLAAPLTSPPGAAGFSLEDFPPLTHPSHPLPSSPALCKKRT
REAEDSPTAEQQEKKMAVADPGDTSSSEEDEGKVVEQATEDMELLLEELGQIPVKPEDVNRVLQLEEALLLQLESPEESP
PPPDNAGGDPPDQSGNV
>L1-53_XT_pol#LINE/L1-Tx1 1276-4665  [Xenopus (silurana) tropicalis]
MVFSFKVGSLNVGSIKSPQRRAAFFDYVKLMDFHFICLQECNLNFMPNYDLLKTEWDLGPSVWSGGNDCKSSGIVVLFTS
HDFRILSVHEIVPGRAVLVKVIFKGICFKIFNVYAPPDKEQRVDLFTTLNLFLPGSEPTFLVGDFNCVLPGEKRLGGDVN
RNMDKSANVLSNMVLDQGFIDAWVKCNRGDPGFTWSNKTVNSRIDFIFVSCTLNPTKVNLVSNVFSDHKLLLFEVTYSGI
NNCQKSFWKLNASLLNDEQIVTRFKNKYAGWRKQKSPNETFVSWWEKTKPKIKEFFITCGKEKAKAKREVYANLNARLQV
LYKLREVGIEVSDELNVVKNDVTKFLEHRGKEIIFNSRVKLLEENEKCTSFFFKKLKSVKENISCLNGETSIDGILKVAT
NFYTELFCEKSVDPGFLNDSLSNIECVLDDSDHDILSKVFTEKEILEVIKNAARGKTPGLDGIASEFYVVFWDILKEDLL
SIYNECFYLDTLPMSWRQSVVVLIFKKGDRADIKNWRPISLLNTDYKIFAKLLTNRFKLVIDKLIHCNQVCGVPGRSAWD
NLSLVRDILWYTKDRKQNLAILSLDFEKAYDRVSHTYLLAVLKKMGLPEIMLKQIKALYSQATTTVQINGHRTSEIPLLS
GVKQGCPMSPILFICALEPLLCALRKDKVVKGVPVPGGGGAEIKTLSYMDDVTIFCKTPATIQRALLITRFFCQGSGFKL
NLEKCDCFGIGNWETVECEVQIQKQSIKILGIIFDVKNDGQQNWEILLQKIQKKLQYWTLRGLSMEGKILIIKAILLPMM
LYVAIVFPPSVLNMKRVVRLCFIFLWNSKMEKLSRTKVMKLKEKGGKNFPDIERFLYVKFFCFIYCSLKKCGFLSCFISY
CAGAFFRKHDLYYFPLTIPVLLNVSSQYLLLGKIFNMYLLKDAPMDFLTDHRKLSNWIQSKEELISVGNASEAQSKRIWK
NVSEVKMDNYQKDLAWSIVHNCVPTRSFQHSRGLVANKSCPRNNCISEETTLHVFWECFYAKCVWGKMSVFLSKAFNVNL
FNMHDVFYGSFVCTDKKGKLCCWLIINCVKEALWKVRNILLFKRDCIAPEQCIELSMAKMYLYFLRDAKYRGKDKAERMW
GFKLWNCIMS
>L1-N4_CQ_gag#LINE/L1-Tx1 161-1279  [Culex quinquefasciatus]
MSHVRTRENTFKVILSNFPKRPKFEEIHKFIHVNLALTPDQVKRLQFSHAENCAYVKCSELKIAQETVAKHNGQHVIESN
NAKVKVRLVMVDGGVEVKLHDLSENVTNEEIVAFLQHYGDVLSIKETSWGSNYTFHGVSSGIRVAKMILRRHIKSFVTIQ
NESTLISYKNQPETCRHCTLIQHIGMSCVDNKKLVGQKTALNQRMSNTQPTPSTSYASVVNSGSSTNTLQIKVVPDNPKI
ESLSNSESVAKAIVIGNSAQTTVVPSELGTSSSILNISPPAGTEGATVQALRKDADAAGSSALIGRTDDDEMPIAVFTAT
SSVDGTFKVPHPFLEPKPHQPMDASSGSDSDHSGSSESKKRKPGRSKKPKLDK
>Tx1-5_CQ_gag#LINE/L1-Tx1 130-1278  [Culex quinquefasciatus]
MEARVVRENTVKLKFGAQNRGPTNSEMFAFFRKQNWNEEMLSAMYKEDYSLLVKFRTKQLMLDVLAKFGNHVEFGYEDGS
NVQLAVSAACGVFKYVRVFGLPPEVDDKAIADVFGKFGNIHQMVRERFPAETGFPIWNGVRGIHMEVTAELPAQVYVQHI
RARVYYDGFQNKCFSCGSTEHLKAVCPKKQTVQSRLESYAHPPLDRGAKGSGQKAGLGAGQRAGQGAGQGAGQGSGSKNP
SWNDMIKNFPDLPTNVQTCLTPEQATLNKPGQEQRKEGEQGEGWVTIPIKEKLRGRGLRQRKATDADSDPEDLFKVPDAP
KLARLQGTRSRSLNSRKQKENSNAQVPVVLIEGSPSPSNQKTDTETSDGKASEEDAAMVDLK
>Tx1-5_AMi_gag#LINE/L1-Tx1 383-2017 via tfasty with Tx1-2_AMi_gag, 3 frameshifts and 2 stopcodons. [Crocodylidae]
MAEGSSQQFTAGASAPLDRSFGLRLHAPPSIGVEECAAAVGALIGCKHVLYAARVSSVPIIFLSSPALVNEVVVAGVSVR
GVFCLATPLDTPAVRVVASNVPPFLSDDDLTNRLRPYGMVTGPVRRLLLGSKVPELRHVLSFKRQLFMLLNREGQGLPQS
MSFMIDGQRYEVYLTTGDTSCFRCGSRSHLVTQCPKKKPAAAEPPVAVPDGGSSTSGAAAPSGGGEGPSSQSLPVSSESA
GSVSGGPGPPPFPPPSGEDLAPPAGKGKSQKQKGSSKKASLSPQDLPTTSRGGEVSEQGPPSLPASSASPPDPVVVGGDL
GVGEVVGESDGPPPTSQILEPDMEVGPSGSRKRLREQECPAQESAPPKRSGTDVTPQDPSGDAAPTGPDAEGPGEGQVLP
PGLGGSRCLTCTAPPPRSRTLILPLRTSRQKSSLRRxRPPIQLRCPPQxGASPPRRRNLFLLLRNPPCAGYSVEHLIEFL
DQTKHHRRVAQHIRKWFPDPETFVVSAKAAAAALHSNPGMQRYSFRLSKLAGDVGRLLREAPAGEL
>L1-5_HM_pol#LINE/L1-Tx1 1315-4698 via tfasty with L1-1_HM_pol, 2 frameshifts.   [Hydra magnipapillata]
MAIKMLTLNVNGLNDDIKRHNIMMYLKNTCCDIACIQETHCSNEKEAQWKEEWSKKTQGFSIWNNGNNKERGVAILTKDR
IQIDQITFNKSGRLLAANITIENCTLRIINVYGPNNPMEKEYFFEKLEKHIRPCDDLIILGDFNMVEDPILDREGGDQLN
KNNMLGKKQLKRLCDTLDITDIYRKLNPQKKSFTYEKPDGSYRSRIDRIYAPTSQANFSTCKIIDHKLSDHKALYCKYKT
KNLHSNKRGPGYWHLNVSLLSDETFEKNLIDRFEYSKHTKAQFENPNQWWDLTKLEIKNCAIERSTDIKHQRILYIKELE
KKISIEKQNILYNKETIKNLKKELKLQKNDFGIFIRTKQTLVETGENPSKFLFNLEKSRSKKKTIETIRDGNITHHETDN
IMRTIRKYYQKLYTKTDLNIVKQQDLLSNIKKKLNNEENQNLNKKLSSEELYEAAMSLQKGKTPGIDGIPVEFYQKYWHI
YGNELTNLANNNLFNENGQLSWSQRTALISLIPKDGDKTLLQNWRPISLLCSDLKIISKAMALRLAKVLDKILTPTQTCS
VPGRNIFSNIFLARDLIHYTNSKNLDAILISIDQEKAFDKIDRDYLLKVLQKYNLGKAFIQAIKTTMENTQSIILNNGFM
SAPFKVSRGVRQGDPFSLMLYCIAVETLALEINKNTGIDGVPIPGSMKPLKVMQYADDTTIFVRNPSSIDVLFEILTNFE
KATGSNINKEKTKALALGGFNYLAYEKYVQQGYYQNHKISWTNSTGLKILGVTFFTDLGYTASFNWQIALCKLENKLKTL
KYRNISLKCKATLINTLALAKVWYVANVFPINKIIxKKIKKRISAYLWQSDYAEPVKREILNLPTDKGGLGILEPTNQCI
SLRTKHLFNLKEVEKPHEATFLLQYLIAIHLTKIATEKYAPWKFLTKNRFPKTINNLPFYLNDIINVLKKNENLLLLKHK
TTKNIYLYLKNNNNNTWINRLQINWETKLQRTLPWNDIWKRSFNSYAQGPSQNTIWRLLQDSLPTTEKVKKWKKNRGRGQ
ISCKSCNKTEDTLHPFIHCRKARSVWLAYKKLYERLIPDQPFNIVHTVFSLNIENLNKNDETAKIITTITHIITSELWRA
RNKYVKEN
>L1-1_SMo_pol#LINE/L1-Tx1 3634-8141 via tfasty with Tx1-4_BF_pol, 1 frameshift. [Selaginella moellendorffii]
MTTLTVLTWNCRGLSSEDSRLNKRVQLKSHIREIGLEGRIDILCIQEHKMVKAPDFNLGMRGRIWWNPATQVRTRCGGGT
AIIVSTKWSAQVRDHRVLVPGKAQLLVIHLHFGRVGIVNVYAPTRRRERAQMWTDIQQSTQGVADEWLVVGDFNMVEGLS
DRRGSLETIQGRERKNWTALVEALGVLDLQHAEGFAAHSHPFTRRQSTGCQARLDRIYASTRLRQDGGGLKTWPAFATFS
DHDPLRGILKLQAVKGTAVQRKITKATMADPVAVKLVQETLDSSKGELVLALGTCSTKLRERQAALKGEVLKEVRLARQK
VAAAQRMVLHANDKARWTATLDEREAELRDKEYAAWSAGLRSMEDSWVMNERLLNKAFYKGIRPVTDSPPILGLRKDDGE
VVEDQQGMQGLAQEFYQKLYTAQPWSPDRRDAAGRVLSTLPRRVPGEYLEMLVADFSLEDLHRALEQLNDDKMPGMDGLL
PAFYEEYWDDVGLMLLETWRDAQKTGVLPGEILEGQIALIPKRGDLQELRNWRPITMLNTSYKIYAKAMALKLQPVMPLI
IREQQTGFVPGRQIAENIWTYLLAQRWANVSNQQIVAWLLDFEKAYDRVDWDFLEDCMRRIGIPARTVSRISLLYRESSS
RVTLNGEIGPTFHLGRSVRQGCPLAPYLFLIVAETLGSFLAHGEDVKGLVLPSERLQLPGTQVVTQELQDGAFADDTALF
LLATPRNLDAARSKLEIFNRAAGAAINWNKSVGVNWGEPGIETWGQEIGFQWLRPGEDTRYLGIQVGTRYNAATQDDTLL
RRIRTAVQKWTPRKLGLPARIVVVKSVILPSIWYHLSIWPVLETTLQKVRQMVRTYVWRGALATGRTMAKVAWQSTARPR
ILGGLGIIDPSDMAKAMRYKIFLMGLQQGRQPWRLMFRQSLLAIRPKHNAAKPWEEDPRWLFAEGPTQVVRGGNFVQSLH
RLWRAFPLEQTPPTRAEEWLNQPLFFNALFKEGGVTLGRETHHTIWRKMHANGFRTMKQLAGVIDRDWWRTARRTQVFGP
WKRRNILLDILRLLRVVNNTKAGTKWPRRCLQAGDFVAIQRQTEWEEHDAVRRPLGTWTRAFTAPTPAWEEGDVEVWFVA
APELNIGLPFRITRGDTLLPMGERQEMPDVTDDEVRGRIRVLRHSPKRLDVVDSEDLLEGDGSLIWWRQQLLEDLDWDPA
AWRRGTGSFFSYAVKEARNGLLTSREEAREEIPKLWQKWIAQGVGAEQVVDNTIHFWKLPVQEKVKVTSWLVANNGLPVG
QRFQDDASRRCRECDEIETVKHALWECDTAKEVWRQIIKAGKELGVTQDFEARSGDVLHWFEEARGPAQGPALRHIRCRG
RHGWGIQVRWDTTGAEVGVPVWEALGHARWAIWRATGVQALWEARNRAHFEGTQVRVSQVLAEWWRLTLAAIRLHHAILR
DRGKLERLEEWQKAWLPCFGRGDHKEVRWRWRPPESILRSARRGDVDLDAIRRRRPQPLLLQA
>L1-1_HM_pol#LINE/L1-Tx1 1509-5021   [Hydra magnipapillata]
MTVNVLTCNINGLNDQEKRENFFGFLKKSSFDLILLQETHSGPSTVQQWGDEWTGESIWNSGPSHNSCGVAVLSKSNISL
SELKRDTNGRILNVIIKFDEHEMQVMNIYAPNVPRERRHFFGDLVDFSQDTGLPVLLAGDFNMVESLPLDTEGTNNAKYH
TYGVDELGVFQGKYNLVDVFRLKFPNKREFTWRNQKAKCRLDRIYCPEKIAKKTTYTKILTNPFSDHEFVTTTVNFSKTR
RGPGYWKLNCSLLEIEVYRQKIELSIKDWQTKKRSYNSILKWWDDCKLFVRVELQHISIQESAKNKKQIKRIENEIQRER
QNANPNLDSIKEKRDALFLLHFPGAFIRTKQKLVEEGEKPSKFLYSLEKTQQRNKSITKVRKNDGTLTSEPGEILNSLVS
YYKNIYTKTNLCKDSQNYVLSHITKHLSDDENQLLNTRLTGAELKEALFKFENGKSPGYDGLPAEFYKTFWHILEKDFEE
LAYEILFVEKNTSHSMKRSIISLIPKQGDLTECKNWRPISLIGADYKIITKALALRLAKVMGKIIEPNQTCGIPGRTIFS
NLHLVRDLIDYAEIKNLPSFILSIDQEKAFDKVDRAFLLQILQKFNLGENFISFINTLYSEISASVLNCGFLSATFPTER
GVRQGDPLSLLLYVFVAEALALVVRADSRIEGFPLPGTSKPLKLQQYADDSNFFARDVKSVRFFFEAVKLFEKASGSVIN
ASKTKGLALGGFDPKMYPELDNIEWTNNTGFKILGVTFYTRLSNTTNFNWLVTLNKIEKKLKFLGLRTLSLRGKTMLINT
LALSKVWFLANVLPVPEWVIERLHSAIFENLWQKTNFNPVKRETLFLPVKSGGLGILSPKEQSLALRLKTLFQLKECGED
NTHDNYYFSKYWLASSLIKFTNQNPSWNFLKQNNFPKHWDNKMSQYYKTTIEVLGKNGSLFNIPLKSTKNFYLEVAKNKK
TVVPAELFWNGSTKTTMPWTQIWKKNFTSHACGPTQNILFRFLHNSLPSAALLAKSTRQQIVQNNKCKTCGKIEDNLHIF
AYCPPSVEIWEYFKHVYNSLTSQTVFSPINSIFSIGTANLSEKNPTSQLLLTLTQTIMSEIWNSRCHHMFSNMKTDPMAV
IRVIIRKIRIIINLKYNYHVRRNTTDIFCQLFCIKNIICQVENGRLKLNI
>L1-3_CQ_gag#LINE/L1-Tx1 156-1226  [Culex quinquefasciatus]
MSSTIRRVNTFKIDFASLPKKPRFEEIHHFVKTTLGIPKEKIERLQVNHYFWCVFVKCVDLATAQQTVLQHNNKHAFEID
GKKYTIKIQMEDGAVDVRLHDLPEEITNDQVKKFMSAYGEILSVRELVWEEKYELAGLKTGVREVKMILKHQIKSFISIE
GQHTYVTYIGQQTTCRHCGEYSHSGIPCTQNKKLLLQKVSVNERLKDAKKPTGKSSYADALMTKPSPRFVPAVLVEDNTG
MDCDGDNTHTDAENSEITTEGNGSSGGGSGFAAEPGIIIQDGGSSGGASGLADMLQKTTPILQETIIRDGDQLCVFKTPL
TLPQDGDGAEESDGSSTSSASGKRPRGRPPKKPKTST
>L1-4_DR_pol#LINE/L1-Tx1 named DewaDr1 by Kojima and Fujiwara gi|34392575|dbj|BAC82619.1| pol-like protein [Danio]
MNNLCLVSINVRGLSSKVKFENVIALTKKCDVICIQETGWNENIVNDLKKCWDGEILYNNDPNKKKGMAILIRRGIGYTF
DVLFKDNYGRILTIKIMNKDEEIRICNIHAPNEDLERVTFFKDLSVLMSGWNNVIVLGDFNTVLERIDVDDHMVFRADVG
RRELKHMIEKHKYVDVWRERNRAKREYSRRQWVNTVLKQSRLDYVLCTRNVESFISNIFYKIFSCSDHDFLYVMMDFSGV
ERGPGVWVFNTELLKNDFYKIEMENIIINSVNDELYDEEISVWWDNVKLEAKRFSIECSKKMQKAKRAKERQLNKEWENE
MEKITEGNMDIRRIVILEEKLKKLEEEKCMGARIRSKIKNTVEGERSTKFFYDLEKTRQKADLIKNVSTKEKTVKDKESI
LRTVKDFYETLFKAKGVHEEDKDFLLNQIKVKVSEEDKKLCDSDITEEEINEAITQLSNGKSPGLDGLSSEFYKTFKDVL
IPILKDLFIAIFKKGQLSESMKKGMIKIIYKNKGDKDYLQNYRPLSMLNTDYKILAKILANRLKKVVPTLITTNQAYGVI
GRDIADTVTSIRDLIWYIKEKKDEGFLFSIDLEKAFDRVEHSYLFDIIQKFGFGENFIKWIKCFYTDIFSCFKINGFLTD
YMEISRSIRQGCPLSALLYTLVAEPLGLAINGEKKIKGFKIEINRTEQKIYQYADDTTLFLKDFKSVGKAMEIFDKYCRG
SVAKVNKEKTEYMKMGKVDVQQGNWEYKEQKKYINILGITLGYDENKTREIIWDELINKMEKRLCFWKQRVLFLKGKVLV
LNSLFLSKMWYVLSVVSLPTWVYKKLKTMILNFLWDDKPSKIAYNTIIGKVDEGGLRLIDPWIRIKSMRIKTLKKFLNED
NILWKSIMSYFINKCGQIRDDFLWMAFKDRMIENIPEFYEELLRTWKCFYNNIQTEIEGRKLYLQQPLFLNQNNKSKKQM
FYENWYAVGFRQVKDILYEIKPGFLPTQAIIDTLEEIEDVDDKEKIEDQYKKLRLALPDHWIKTIEENEKETENRKIKVF
FKKWMKIRLVSMIVLSRCFIHVCVTLCLKKPKSREFWEKLFENFDTSNIWKNVRSILKSPALENLDFMLRHNCIMTEIIF
KKIGVSQDDLCKVCLEKKEGVLHLFLNCKKLSDFMKMLKTMVCNFLYDENIILEEWDTLFYLVLMGKQKISLLLIIC
>L1-3_SMo_pol#LINE/L1-Tx1 4156-8586  [Selaginella moellendorffii]
MVNVNVRTWNVGGLKKERSALNNKKTKFRQYLRQVEGVTQCFDFLCVQEHRLSSMDLVYKFTKGKYFWNPAVSCSGGTLI
VVKGPWESLVEDHAILVPGRAQCVQFKIGDMLVGLLNVYAPAGSSSERADFWNELVHRIPAQPSTWMVTGDFNFVEEELD
KDGGEMRDKRTSRERAMWAQLVLAMGLEDTYNIPGFVQHQPRFTWQEHQQRGIQRRLDRFYVSPELCRNSGKLDIATGYR
DFSDHNSVSLTLPILKRWGTKRPAPVSRKNFEDGKLNDYIKEKWNQQEGGDLHKFTIKIANEIRKKTQNKRRKVFKKVQA
IRRNIEAIKRLIRLDPLDASLRTQLARTKAQLFTLEAEKMEAFIRSGHLKWHXSENALNKEFYKSIKARVTSPPMFGLKD
DQGVMHTSLQEMHRMAETYYQGLFRAEPWTEERKTAMEEVLQSVPQKVDESLARALCRNFTLEELEDAVRDLNDDKMPGE
DGMPPAYYKANWEWLGPVVLDTWKEVMRTGQWPPGAIDGIIALIPKKGGDASLIKNWRPISMLNTLYKIVAKALAKRLRP
LLPETIHDTQNGFVEGRQLVDNILTVLLTQEQVKDQGLEMAIILLDYEKAYDRVDWEFLQTTMRKIGIPEEFIGWTATLY
QGASSKVTINGTVGNTIKLQRSVRQGCPLAPFLFLFVADALAHYLARVDGPEGLVLPGCRDSLQDLAGTAERQLKSSAFA
DDTGIITSGSPENMSKVKKDLDFFNLAAGSRINWGKSVGIWLPSSDPPNWGSEWDFKWLKQGETTRYLGFQIGRAYDPLP
QNQKAVEKLRDQLKFWASRKLSFSARCVVANNIVLGAIWFLAASWNLDKKTLKEMNKLIRTYVWKGQATVSRGGAKVGWS
SVTRAKQDGGINIIDIEEQCKALLFKIFHRMNMPGNQPWKLLLRHQLLKVIPDRLEHTRQNWEKDERWLFTEGALKMPKP
NTFSGKLFRLWKEFKSKMEKRKPTNTYELDRQPIFLNKLFQYKGKCLGETADRGIDKVCRDLHSAGMRTFAEADSMIKAG
ETEMNRDRLKAFYGLEISAHRLKKFETAFEEAQGXCKQSIREVRETTPAWWIAEEKVIYTATQDQAKCXVFEVGVAGRLL
PYKVPKESLRPDMSRAEPIRVIRIDKKTASMDPKITEGQVARMYWFRQQKLSELAWDPTEWNWRGRKKEEFFAYETRLGR
RLIRPRSDSLLVSRMKRANIQDKTQQEILKELWKGRWAAKTRYFMWLTMQDRLPSKRNIHLVDQACDKCGARETQRHILW
ECESAQDVWRSTCWLLQQHSQRQVCLTYEAAVWGEAAAGMRNGTDSWKWASREEGAPRFDQLNTTRTDIEGIPTEIVDLL
RGITMWEVWKARCNRIFNDREEGPRVVASRVWTRMITAAAARVLQLEKRGGRNGPEKAKKEAQIWHFLWKQGEAGTREWM
WTPPDEWFQVTHLGRPSGASSRATPLSVGTSIVGSSR
>L1_AC_9_gag#LINE/L1 1353-2375  [Anolis carolinensis]
MANLKMKGDKEERKLSFNTTRRPSLQEEFTLKDVMKELQRLSEKQDQLQEQMYDMRQKLTDDLSEVRNDMSKLKQDMGNL
QQEMRDMKIERQQMMDQQKKQAAKLDKITEIEEKNSKLENMQEKLEQQVMEFQLRYRNVEEDPKEDIKQIIIQITANLME
CTTKEMEEKVDRVYRISTSYTRRHKVVRDVIVHFTKKSIRDEILKASNKAPIVYQRRRVAILKEIPLTTLAKRKKYMFLT
EELKRLQIKFRWERTEGIMATYKGERFWLTTEEKARDFYKRLKKDSLDNKTPSKGIPSKRLRDESPEQLGIQYGAGVMDL
GTVEEEEEVDKDQKTEEEERS
>L1_AC_1_gag#LINE/L1 1340-2398  [Anolis carolinensis]
MTTPKWKMEKDKMDSRLNVRRSSLPEEGGLKEILREIKKISEKQDLMQNEVQMIARKQDLQYKTFQEEMADLKKEWREEI
GAMKQEIIKNSNDINDLKIVNRKNEKTQSKLQEKIESMEEKGKKLEKIQERLELQALEFQLRYRNVQEEEKENIGWVITR
LTAQLLQCTDQEACGQIDRVYRVQSNFTKKNKATKDVIVHFLKKTTRDEVLRRHARNPIWYKERKVIILKEYPKSILNRR
RKYYFLTDELKRRQIKYRWEKYEGLMATYKEDKIWITTEEEAKDFFRTLKKDVKSNRVSSSSDSGKNPKETKKRRFDSPK
DKDQTVTELDLNTDQDDSDEGDPTEEERTQRDE
>L1_AC_10_pol#LINE/L1 2643-6376 via tfasty with L1-25_ACar_pol, 3 frameshifts and 1 stopcodon. [Anolis carolinensis]
MRRHLKIYTCNVNGLNTPQKRNKIYNSLKKLDYDIISLQETHIRHGQEKFLTQLKLGQEFHSSYIQKKRGVVTYVNPKLQ
AQQTFKDMDGRILGITINIENLKILVINIYAPNETKSKFVKKLKELMYDKEFDKIILMGDFNGVMNCEKDRNPGRKSRDK
KYKGLLSKEFKDFKEEYDLDDVWRSHHENERDYTFFSAKYKSWSRIDMVWVSKSLSPLVQKIKILPRLDTDHNPIELILN
QKERHWRWKLDSNLLKRKEDIEKNRTLLEEFIKINDNHETPLHIVWEASKATMRGYFIQQGVWKKREKQKHIKSIIDxIS
KIERELKSNPNDLVLLQKLEMTQKRREFFELEERAKQMNYIKQTHFESANKPGRWLSRKLRGKKEATNINRIRIGEKYHC
LEEDILKQFSKYYKQLYGKDSIEREKITSYLGKLKLRITEKEREDLNKEISKKEIQMAIKKFDSSKSPGPDGLTAVYYKT
FEKELIPYLHKIMNNIRENGKMPDSWKEALITVIHKENSDPEEIKNYRPISLLNVDYKIFSNIIAERMKSFLKNWIKEEQ
SGFLPNRNIKDNIRLVVDLLEYYESHNQHEILFLAVDAEKAFDRVNWDFFKLLIQVLDMGYYLQNSIEAIYQNQKAKILV
NGKETEEFVIEKGTRQGCPLSPLIFIMTLETLLINIRSNTELQGANIQGVQYKVQAYADDIICFIEDPVNKGEKWISTIK
EYGDIAGLKINMSKTKALAKNINKKKQELISKTLGIEITSKIKYLGISISPKNSQLLKNNYEKNWKNIKKDLENWKNLEI
SLLGRISVVKMSILPKMLFLFQCLPILRNQKCFITWNKDLSRFIWQGKNPRIKRINLIDDKRRGGFAMPDLKTYYEASNL
IWIKDWIQLKNKKKLTLEGFKTGWHSYLWYDKIKIEKKFGNHFIRSALIKTWNKYKLRMYNKTPTWISPLEAVQRRLLGW
SQWPKYEDLIKLQGSEYVLKSQQELKTEYKNITWLQYGQLKNSYKKDEIKGFMGKNNLWDKILFSTGHLILRIYKILLEW
NTEIEQVKNNMVKWATDIGRPIQMEEWEACWGRKLKYTYSYQLKENWMKMFYRWYITPQKLGMISKTKNYKCWKCGEKER
TFHHIWWECKKAKEYWNKIHEIIQNMLNIKVKKTPELYLLGIFKESQDINEEKLMTYLTTSARMSYARYSRQKVIPKTEE
WLTKVAEIKNMDRLTYLIAKNQGRPRKETNWQAIEKYLGTNMATK
>L1_AC_16_gag#LINE/L1 586-1332  (fragment) [Anolis carolinensis]
NIWAGKSDKKFALNITEIGKKTQDLDLKITATEAQVAVNSIEIKQCQESLQRMDLRVINLMDRDRRMNIRIRNFPEINGE
NPGILKREMIKWIKEISQTDCEESWFERIHRVGYKKNTPFPRDILVRFGNFYYKDKIMKVLRGQVSPLKYQGTLIQIFPD
LCPETLAWRKSIKRVTTILQSQKIPYSWGYPVHLRFRWRSNNYKITSLDQGLALLQELNLTTEATEPVPMEKEKEEERGK
KDAATGGGD
>L1_AC_12_pol#LINE/L1 2445-6254  [Anolis carolinensis]
MSMSRKLKLYSNNVNGLNAPQKRNKIFSRLNKLDYDIISLQEVHIKQSHAKFLLQQKLGQEFHSLDAQKKRGVVTYIKSK
IPAELSFKDNEGRILGVAIKLENLKILVCNIYAPNESKTTFVKKLKELLTDKEFDGIILMGDFNGVLNNEIDKNPGTDKE
KRKNKGTLSKEFKKFKEEYNLVDIWRLQHEKERDYTFFSARHKSWSRIDMFWISRSLSPKVTKTKILPMIDTDHSPIELI
LNQKRGKWKWRLDGNLLKKKEDIEKNKKLIAEYFTINNNQETSPMIVWEASKATMRGYFIQQSAQKKRKKQEQLKQILEE
ITEIENKLKKNPKNNKLLQELIIRQKNREHLELEQRAKQLKYIKQDFFENANKPGRWLSRKLRKKRESTYINRIKIGEKY
YFTEKEIANQFFKFYSKLYEKDKIPEENITSYLGKLKLERITTEEREVLNKEISRKEIKDAIKKLDGSKAPGPDGLSAIY
YKTFENELIPHLQIIMNIIRNERKMPDSWKEASITVIHKENTDPEEIKNYRPISLLNIDYKIFSNILAERLKNFLVNWIK
EDQVGFLPNRHIKDNIRIVLDLIEYYEINSQREVLFLAIDAEKAFDRVNWNFFKFLAQELDMGYYFQNLLEAIYQNQTAK
IIVNGIETEPIKIQKGTRQGCPLSPLIFIMSLEILLNKIRENKELQGAEIQGVNYKIRAYADDLICFIEEPLKKGGKWIE
TIKEYGEVAGFKMNINKTKALAKNIQKKKQDSIIEQLGIQITSKIKYLGIDITPKNIQLLKNNYEKIWKGIKKELETWRN
LKISLLGRISTVKMNILPKMLFLFQCLPILRNQKNFINWNRDISKFIWNGKKPRIKIKNLTDEKSRGGLALPNLKLYYEA
TNLLWIRDWIQIKNRKILNLEGFDLRIGWHAYLWYDRTKLEKNFCNHIIRSALIKTWQKYKTRMYNKTPGWLSPLEASQR
RLLGWSSWPKYEELIKKQDSEHILKTQQEIKIKYPNISWLQYGQLKELFKKDKTMGFMENNNRWDRIFNTERKTISKIYK
ILLEWDTETEIIKDCMIKWARNIGRSIQLEEWEACWGRKLKLTYSYDLKENWTKMFYRWHITPKRLGLINKSMSSKCWKC
REEEGSYFHIWWTCKRAKEFWTKIHESTQIILDKKFNKTPEIYLLGISNFPPGSNEEKIITYLTTAARIIYGRFWRQKEI
PNKTDWLTKILEIKNMDRLTFLMSKQQGKPRKETNWQQVENYINKKEKGKTNKKEVIHLDIHTHKRKKIG
>L1-100_CSav_gag#LINE/L1 28-1410  [Ciona savignyi]
MSRSILIKLSGNVELISVSSFMEIFSESAPLYYLSPKIEGVITESFKDSEFLITLKMGTEGESPDLETTIKEINDSNLTF
TGPAGTIMNIGAKYPEPPLEIVTLYPVPCLVSEHRLRQLLTKYKWGRIHSFYFGTHRHFPEIKNGWLTIKLFDVNINNIP
KVMKVGGRWVTVTRPGESHLPLCRYCKERGHTQQKCPKKGYCANCKTYGHLTXRCRSNPNTQPSHHIGTHPDPTRTRYQT
PPSQLHQWXTPNLPKPQKKILVQNNPTPTSNMFNTLLQFNDTDDTNDEDETIVTAGPNLGLPKRGKKKNRKIATNSANST
PKSITDEPTNLTTLFSNEXILPNSDHNSNSEEQTTPSNTPXKPTQLSKSPNHDQYSDXKVPSIASSQTPSTEQSPIPTDP
STENSPESAMHIIKTAHRNLGLDDRDKQSTSQPPHIQRTVHRIKLFPPESPSKKRKLTTQQ
>L1-48_XT_pol#LINE/L1 1697-5490 via tfasty with L1-1_DR_pol, 1 frameshift. [Xenopus (silurana) tropicalis]
MVKILTLNVNGLNSIMKRYMLTRELNRQRPDITMIQESHLKSPDDLSLETKFYTKIYQATTNVKKAGLITLIHRDCPFEV
QNIQADPKGRFLILNGLLEGKPLKLANIYAPNKNQLRFLRSTLTKARGDSQIPIIIGGDDNLVPSETRDGSHPPQLQQYK
DQCQKFRQLLQKLDLRDLWRIHHPNERAYTFYSAPHQLYSRLDLFLGSRDLLMYPATSDLIPIPWTDDHAVTLDIHFSTS
IRKPTHWRLNEVLLNDPQISSSIAQTIKDYFIDNAHSVENVSVLWEAHKAVLRGKFMSIASARKKKKMSTKVTLEQKLSQ
LECKIHTDASVKLRKEILEVRRELKMLASGEIEKALKWTKQKFYERGDKPHSLLARKLREQTARSTIVSIDKANGDRTFS
PKEISKAFQDYYTKLYNLPTSVAQSQESQTAARQTFLKENLHTTLMQHDIDKLNKPILEEEVAGVIKSLPTSKAPGPDGY
TYAYYKKFSPLLSPYLTKLFNSFMSNNTIPHTMLQSYITLIPKEGKDPNLCGNYRPIALLNSDLKIFTKLLANRLGPLMP
QLINLDQVGFIYGRQAGDNTRRAIDLIDALNKTKTPALLLSLDAEKAFDRLNWDYMFELLKQIGIKGPFLRAIQHLYSKP
TATLKLPEASHGLIPISNGTRQGCPLSPLLYALSIEPLASAIRNHKDITGPKIQDQEFVISLFADDILLTLTNPTISLPN
LHVLLTQYSKHSGYKLNVDKTEALPLNLPSQTREALSTKFHYKWKTHSLKYLGIQLTKTYHQLYQSNFPPLIQEIKSLLH
KWNTLTISWLGRITVTKMAILPKLLYLFETLPVRVPKTTLKDLQAAIFKFIWGKRRHRIARTVMMASKTQGGLAVPHLQA
YYEASHLRQILGWTTFAPSTKWAHIESTLDLPTHPNSLLWDGKGKGISDILYPMHFTLTLWKVCKDKYRLANQASVVKPF
LANPSFTPGMSESFKNYWGPKGVFRIYDLLDPLTLKQRSFAEIQNKYHIPNSRFFEYLQIRHFIQANLPKDPSLLSLTTF
EKLCMTGLPRRALISTLYSLLTSLPEDPFPKHSYMLKWEEITSTTLPLDEWADIWDNVRRTATCVRQKESIYKTMLFWYD
TPVKLSHMFPGTSPLCWRNCGEQGTLQHIMWHCPIISPLWKEIEGILSRILFKETPLDIYTALVGRPILDNTAAEQKLTN
FVLTATRLAITKKWKDPVPPRLGDVLLKVRDMREMELMTANVYDRRKQWERVWSKWDYYIANIRR
>L1-37_XT_pol#LINE/L1 1356-4931  [Xenopus (silurana) tropicalis]
MTEIKLLSWNVRGLGDPIKRGLVFKTIRCSKPHLILLQETHIDKSKLRTLHKPWLGAHYQSTYSSYARGVAILVSRNCPF
TLIKIITDPEGRYIIIHCTLQGKQYIITNVYIPPPFSATLLSQIMDKILTLPLTPLLFMGDFNAVMSEPDDRLYPSNRPS
SALSKWATTFNLQDLWRIKHPGERKFTCFSHSHNTMSRIDLALGSQELVTQTIQAEILPGGISDHSPLMVTIEVDPRIPD
KLWRLNSFWLQQKKINETIDGELKIYTEINTNSSTPQTVWDTLKAYTRGLYIQQIKTFNRNTQQEITNLENAVTTAEEEF
SQFPSPQTKRDLLAAQNALQTIQTKQVKKSQLNLKANIFSTGDKNSKLLALLSREISPLTNIPAIKDENHQTISNPTEIN
KVFKSYYENLYTSRMTQTENEILAYLRTIPLPSLDIQDKLQLDRHITEIELTEAVSSLSKGKTPGPDGLPTDVYLKHVEI
LAPLLTSLFNNVLEGANLPASMSETLITLLLKPGKDPLNCASYRPISLINVDAKILAKILARRLNQIITKLISPDQTGFI
PGRTTDINIRRLYTNLTISHDNSGHRVLAALDNEKAFDSVEWTYLWATMETMGIGKNFQKWVSALYNNPHARIKTNQTIS
SPFSLSRGTRQGCPLSPLLFAIAMEPLAAILKNTPSVKGLQIGKITETIAMYADDTILFLENPYEALDSALRIINKHTIY
SGLKINWNKSIIFPIDTFPLDTLKYKAPLQWTTTFKYLGVYIHRDIEKYVELNLNPLLTLVENKSKAWRNLPLTLLGRIN
LFKMILLPKFTYLFRQAPVTIPHSFFHKLKTLLSTMYWASSPPRTALTTLQYPSDSGGLAAPNMFLYYIATKLVNAWWWG
SPSLDNAATILEAQLVNSLETLKNLLYRGISNNETLSPLMKATVKIWKTALVYFPRKENWRSKNTPLWHNPHLPHLLTIP
EPNIWAKYQIKYLGEIMEQGEIPTFDTLKGKFNLPNKMYFRFLQLRHALQAQFGKNKIDTTPRRIEEMVLEPNLLKPVSQ
FYSLLNKPEKPILPKLYEKWKRDIPHLTPEMWIETLETYNTTLISSKDKMIQFRFLHRTYLTPHRLHLINPEIPDICPKC
SQSPADYIHMMWACPTIKRFWTKITEETSRLLALINSSVPLYHLTYLSRGCPQKFHKVWTPWITEHLPALLP
>L1-57_XT_gag#LINE/L1 133-1122  [Xenopus (silurana) tropicalis]
MPVRGNKKPPQQDLTPFLAKAKQTPPKTQDGAESSEPTAQESNSESEDTETANLAPVTVSVMKKLLSDFKSSLNADINEA
IHLLRTDVQNIGQRVNSLEQAVDEVRGTQNQYSDCLNSFNKQLLAMKDKMADIEDRARRNNVRIRGIPEQITQEELPSYF
HTLLSTVLPNLVPTELMIDRIHRIPKPKNLSIDTPRDTIVRIHFYTIKDRLLNHFRSKAQLPPQYQNLHIYADLSAHTLL
RRKEFSMTTNILRSHGIVYKWGFPVKLIILRNGSQHLFSTPKEAIAALTDWGLTDLQMDISTPKIPKKRSLDWSTVSPRK
DKQQQRPAPT
>L1-97_Cis_gag#LINE/L1 130-1188  [Ciona savignyi]
MYMSDRTTVVIGWIPFPLKNEVLAETLCQYGKLYNIRNKVDKRGLSTGIRLALLEKSDLEKRPIPSYINVAGYELFVKYH
GQTETCKHCGEPGHKLATCPRRFPPDQYPALQRTQENDNPPQAKPAETIMTQETNEQENGDKCVDSLEEPSLQESVQITK
PQKTNNIKYNDSTGTKRPRTSPTTEQPRSKTVSLSKNQFQVTCPYCKTDGLILDDATSYYCIKCRKSSNVAKPCCSEIGD
WWLEPKAQTSTICLYCEENMVKLPCCGQFRPEIKLKGNIVECCHCLLRSVFCSCGHLNLAPPRNQRKPCKNKTCTKWIMN
CNCNLICAKTTEDGGQIVCSCGIELEEDIELAS
>L1-59_XT_gag#LINE/L1 75-782  [Xenopus (silurana) tropicalis]
MQADHETLETYKEKMYLMEEKLEDLENRSRRANLRLKGVPETETDLEKFALSLFSKILPNMPQEQLQMVRIHRVLAKPRN
KESPRDIVLKFQYEATRDAVLQAARLLTRKDASQLPADIFDDLAPTTLQKRRQMREATQILQKAKIKYRWGFPFALHCII
NNRYYTFKSADAALLVLGKEGLTAITPTMPTTNSPRPHNEWHTARSPRSSSTPDRQTPSPKPQRPKPDNPQEDNNR
>L1_AC_17_pol#LINE/L1 1547-5299  [Anolis carolinensis]
MGEVVIMSHNVNGLSTPQRRAKVMKMVKDYKVGILLLQECHKRKDHTPLFNDRIWGQVYESRGSNRARGVAILIKNTIDF
QVEMVKRDSDGRWVMIKGKIEKIRITLVCIYAPNKNQKKYLKKLFGEIDKFAQGEVYCAGDYNLELVTTRQNSNRKLNIR
EYNMNDLLEGEPENNRWTYYSGRHDTYSKIDYILGKNTNQSVILEAKTLPIHLSDHAPLRVKVKLEIERKERTWRYNTVL
NSREEEYETIRKEINKYFETNDNGQVTKDIIWDASKAVIRGHCISLEVNLRRRWRNEQDKRIKEIETLQDKHKRTKDRQI
WRELKEKKNQLEAFEERNIINKYLYVKSYSQSWNIKSMKRMAYYLKKKKEKTWIKRLKDENGKEQEEQSKIREIMAKYYK
NLYKEERVMQGNLNIREKIAEEDRELLNQPITQEETIRAIKGLKGGKSPGPDGFPAEYYKAFMEELAPHLTELFNEIYTK
QKVPLTWKVSEIITIPKKGRDLTQPGSYRPISLCNQDYKIFTKILAKRLETIMPKIIKEDQYGFVKGRKIGDPIKNVVIA
MNHANSNKKKMGILKLDVYKAFDKVNHNYLLRLCQQLNMGENFCKTLQQLYSNCKAKIRVNNGRTGEIPILNGTKQGCPL
SPTLFVIAIEMLAESIRNSTNWTGYKIEKGGGQKEEIRLNFFADDAMIITSQPLIMVKDIIKKLEEFKNISGLFVNIKKS
EILCLNTPPREQLEIRKISGLRLGLKKLKYLGVWIYKNPKSIVKGNYKQKWKVIEKQFKNWEGKTLTRVDRIRALKMFII
PKLTYLFQTLPNTVDRKTLKTWDRRIRKWAVGGKRPRIRDKWLNAKEEEGGWGIPSLEVYHDAFQIQRLLEIQYTKKKWA
NMEKIINNTKEKEIIFREWSRREEAEFKEPFKGTIKVWKKRKKKLSPGNENKMATIWQINYNNNEIIGRTLRSIESRGKR
LVEDLYTIDGDPVEQKEIQNWIGSGNWIQSWAIRQEIFRLREKIREQDSPFEKAIRKCLREEKKVAGDLYEQIITVKEEI
VEEIFQTWRMDMEIEREDIQREISNIAKEKYNVLREARRKMLQKWYRTPAQLSRFLPGMKDRCWHGCEQRGVFNHMIWEC
DRVQEYWRMIEGEINRMLNLQIVIVNRNVLHARITEVKNIQKEKMIDKLIACAQIVLVSGWKDKTKWTLTNWYKYIIDML
NVEITNCKWNNIDKIENIAIIKGMWEPVKNYLENVLRCGVEKLRLRLIFQM
>L1Opos_pol#LINE/L1 1-3837  [Monodelphis]
MEGNTQLVIITVNVNGMNSPIKWKRIAEWIKNQNPTICCLQETHLRQGDTHRVKVKGWSRIYYASAKVKKKAGVAIMISD
KAKAKXDLIKRDKEGNYILIKGTIDNEVISILNIYAPNGIASKFLKEKLNEFQEEIDSKTILVGDLNLPLSELDKSNQKI
NKKEVKEVNEILEKLDLIDLWRKLNGNRKEYTFFSAVHGTYTKIDHVXGHKNFTTKCRKAEIXNASFSDHNAIKIIXNKG
PWKDKLKINWKLNNLILKXGWVKEQIIETINNFIKENDNEETTYQNLWDTAKAVLRGKFISLNAYINKIEKKQINELGMQ
LKKLEKEQIXNPQLXTKLEILKIKGEINKIESKRTIELINKTRSWFYEKTNKIDKXLVNLIXKRKEENQITSIKNEKGEF
TTNEEEIKAIIRSYFAQLYANKSDNLSEMDEYLQKYKLPRLTKEEIEYLNNPISEKEIEQAINELPKKKSPGPDGFTSEF
YQTFKEQLIPILYKLFGKIGKEGILPNSFYDTNMVLIPKPGRAKTEKENYRPXSLMNIDAKILNKILARRLQQYITRIXH
YDQVGFIPGMQGWFNIRKTISIIDHINNXTNRNHMIISIDAEKAFDKIQHPFLLKTLENXGINGXFLKMINSIYLKPSAS
IICNGDKLEAFPIRSGVKQGCPLSPLLFNIVLEMLAXAIREEKEIEGIRIGNEETKLSLFADDMMVYLENPRESTKKLIE
IINNFSKVAGYKINPHKSSAFLYTTNKVQQQEIEREIPFKITXDNIKYLGVYLPRQTQELYEHNYKTLFTQIKSDLNNWK
NINCSWVGRANIIKMTILPKLIYLFSAIPIKLPKNYFIELEKIITKFIWKNKRPRISRELMKKNVKEGGLAVPDLKLYYK
AAIIKTIWYWLRNRVVDQWNRLGTQHTVVNDHSNLVFDKPKDPSFWKKNSLFDKNCWENWKTVWQKLGIDQHLTPYTKIK
SKWIHDLEIKGDTINKLGEHGIVYLSDLWIREEFMXKQDIENITRCKMDNFDYIKLKXFCTNKTNATKIRRETTNWGKIF
IASXSDKGLISQIYRELSQIYKNTKHSPIDKWSKDMNRQFSDEEIKTIXSHMKKCSKSLLIREMQIKTTLRYHLTPIRLA
NMTKKENDKCWRGCGKIGTLIHCWWSCELIQPFWRAIWNHAQRAIKLCIPFDPAIPLLGLYPKEIKDRGKGPTCTKIFIA
ALFVVAKNWKLKGCPSIGEWLNKLWYMIVMEYYCAIRNDEQDDXKKTWKDLYEVMQSEVSRTRRTLYTVTAIMYDDQL
>L1MC1_pol#LINE/L1 2285-6103  [Eutheria]
MVDINPTISIITLNVNGLNAPIKRQRLSEWIKKQDPTICCLQETHFKYKDTYRLKVNGWRKIYHANTNQKKAGVAILISD
RADFRARKVIRDKEGHYIMIKGSILQEDITILNVYAPNNRASKYVRQKLIELQGEIDESTIIVGDFNTPLSEMDRSSRQK
ISKDIVELNSTINQLDIIDIYRLLHPTTAEYTFFSSSHGTFTKIDHILGHKTHLNKFKRIEIIQCLLSDHNGIKLEINNR
KIAGKSQNTWRLNNTLLNNTWVKEEISREIQKYFELNENENTTYQNLWDAAKAVLRGKFIALNAYIRKEERSKINXLSFH
LRKLEKEEQIKSKVSRRKEIIKIRAEINEIENRKSIEKINKTKSWFFEKINKIDKPLARLTKKKRERTQITNIRNERGDI
TTDPMDIKRIIKEYYEQLYAHKFDNLDEMDQFLERHNLPKLTQEEIDNLNRPISIKEIESIINNLPKQKAPGPDGFTGEF
YQTFKEEIIPILYNLFQKIEAEGILPNSFYEASITLIPKPDKDITRKENYRPISLMNIDAKILNKILANRIQQCIKRIIH
HDQVGFIPGMQGWFNIRKSINVIHHINRLKKKNHMIISIDAEKAFDKIQHPFMIKTLSKLGIEGNFLNLIKNIYKKPTAN
IILNGEKLEAFPLRSGTRQGCPLSPLLFNIVLEVLANAIRQEKEIKGIQIGKEEIKLSLFADDMIVYVENPKESTKKLLE
LISDYSKVAGYKVNIQKSITFLYTSNEQVEFEIKNTXPFTLAPPKMKYLGINLTKYVQDLYEENYKTLMKEIKEELNKWR
DIPCSWIGRLNIVKMSVLPNLIYRFNAIPIKIPASYFVDIDKLILKFIWRGKRPRIANTILKEKNKVGGLTLPDFKTYYK
ATVIKTVWYWRKNRQIDQWNRIESPEIDPHKYSQLIFDKGAKAIQWSKDSLFNKWCWNNWTSTCKKMNLDTDLTPFTKIN
SKWITDLNVKCKTIKLLEDNIGENLDDLGXGDDFLDTTPKARSMKEXIDKLDFIKIKNFCSAKDXVKRMKRQATDWEKIF
AKDTSDKGLLSKIYKELLKLNNKKTNNPIXKWAKDLNRHLTKEDIQMANKHMKRCSTSYVIREMQIKTTMRYHYTPIRMA
KIQNTDNTKCWRGCGATGTLIHCWWECKMVQPLWKTVWQFLTKLNILLPYDPAIALLGIYPKELKTYVHTKTCTRMFIAA
LFIIAKTWKQPRCPSVGEWINKLWYIQTMEYYSALKRNELSSHEKTWRKLKCILLSERSQSEKATYCMIPTI
>L1PA2_pol#LINE/L1 2110-5937  [Primates]
MTGSNSHITILTLNVNGLNAPIKRHRLANWIKSQDPSVCRIQETHLTCRDTHRLEIKGWRKIYQANGKQKKAGVAILVSD
KTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLSDLQRDLDSHTIIMGDFNTPLSTLDRSTRQK
VNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHIVGSKALLSKCKRTEIITNCLSDHSAIKLELRIK
KLTQNRSTTWKLNNLLLNDYWVHNEMKAEIKMFFETNENKDTTYQNLWDTFKAVCRGKFIALNAHKRKQERSKIDTLTSQ
LKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFEKINKIDRPLARLIKKKREKNQIDAIKNDTGDI
TTDPTEIQTTVREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIEAIINSLPTKKSPGPDGFTAEF
YQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIH
HDQVGFIPGMQGWFNIRKSINVIQHINRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLKIIRAIYDKPTAN
IILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLK
LISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWK
NIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAHIAKSILSQKNKAGGITLPDFKLYYK
ATVTKTAWYWYQNRDIDQWNRTEPSEIMPHIYNYPIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTKIN
SRWIKDLNVRPKTIKTLEENLGNTIQDIGMGKDFMSKTPKAMATKAKIDKRDLIKLKSFCTAKETTIRVNRQPTKWEKIF
ATYSSDKGLISRIYNELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVRMA
IIKKSGNNRCWRGCGEIGTLLHCWWDCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPNDYKSCCYKDTCTRMFIAA
LFTIAKTWNQPKCPTMIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLEIIILSKLSQEQKTKHRIFSLIGGN
>LINE1-12_SBi_pol#LINE/L1 3382-7089  [Sorghum bicolor]
MSINGLIWNCRGLRKKGVSTFLKDLISQNRFHFVGLQETMIKDCEEKILRKFDPNKDYLWLYNPSKGKSGGILVGVRNDL
YDVGSFQQGDFMLQMNLWDKSNKIKWNLLIVYGAAHDDKKMDFLAELSSFCSRNSNPILIGGDFNIVRFASERNKPHGLT
RFTNLFNSLIGFYELKEIVMTGGLYTWSNNQGDPTLEKLDRILVSRDWEDIFPTAMVKRLPREISDHNPLILTSDCHKPL
KFLQFRFELNWLDNPEFLGAVEKIWSKHCNARTSLDRIQQKLKLVKQYFKGWGFNLQGELKKRRKLVSEELFELEGIEEE
KSLTQEQMARKVWLIKESLQLLDQEESYWVKRCHEQWLLKGDNNTKYFHSIANGRKRKNSVLFLESDGFVIEGDDNLLKH
ATDYYGDLFGPSEEHNIHIDNSIWDELEKVSDEENSNLTKPFSESEIKDALFQMEKNKAAGPDKIPIEFYQTCWNIVKED
IIQLFDDFYEGKIDISRINYGIITLLPKITDASKIQQFRPICLLNCLYKLITKTLTLRLEKVADKLIHTNQTAFMKGRNI
MSGVMVLHEILHETKRKNQVGIILKLDFEKAYDKVKWNFLFSCLAARGFNDKWCKWIEQVVSGGTVSVKLNNLTGPYIKS
YKGVRQGDPLSPILFNFVADGLSRMIHKAQSNNLFSGLIDHIVNKGVAVLQYADDTIICLEHNLEGARNMKLLLYMYELM
AGLKINFYKSEVLVINDKDNWANVYAEIFNCQIGIFPIKYLGVPVSPSRLHVLDWLPLVEKNNKKLDPWKGSMMSIAGRT
VLINSSLSNSPIYHMSIYLLPKTIITKMDKVRRKFFWQGGGTKKKYHLLKWAKICKHKKKGGLGIRDLRKMNISLLCKWW
WKLDTEKGLWQDIVQYKYLRKKNICTVKHRQNDSAIWADLLKIRHIYLQGRKVKIKNGDKALFWKDSWLFDKPLECLFPD
LFSICMQPDISVSQMKQRSVNFTRWLVDNMRLDWNNILRKVEKITLTDGEDMVNWKFDKKXCFSVKSVYKFLTTNDAGIY
YKNIWKGKIPAKIKIFLWLVANNALLTRDNMVKRKWTGDPSCLFCECNESVSHLLFQCSLAKAVWAVVAHCLGASNVPRN
LNQSWAWCEQWLPYGTKFHAIGIAAICWAIWKTRNSACFEDKVVTSPIHVICYACSLMEYWAGLFLEEDKEQLIAGANTM
LKIAMQLVSREVRDQKHLALEDNKSTDEEDAPDGQK
>L1PB1_gag#LINE/L1 L1PBa_5end_1660-2681 via tfasty with L1PA10_gag, 2 frameshifts and 3 stopcodons. [Primates]
MRRNQKNNSGNMTKQGSLTPPKDHTSSPAMDPNQEEISELPEKEFRRLIIKLLKEAPEKGENQLKEIKKNDTGYEWKNLQ
RNRXHKXKTNXSQLLEMKDTLREMQNALESLSNRIEQVEERTSELKDKAFKLTQSNKDKEKRIXKNEQSLQEVWDYVKXP
NLRIIGVPEEEEKSKSLENIFEGIIEENFPGLARDLDIQIQEAQRAQRTPGKFITKRSSPRHIVIRLSKVKIKTKERILR
AVRQKHQVTYKGKPIRLTADFSAETLQARRDWGPIFSLLKQNNYQPRILYPAKLSFINEGKIQSFSDKQMLREFTTTKPA
LQELLKGALNLETNPQNTPK
>L1MB8_gag#LINE/L1 L1M4c_5end_782-1765 [Eutheria]
MSSFQQQQKITRHTKKQESMAHSKEKNKPTETVPEKDLMADLLDKDFKTTVLKMLKELKEDVEKVKKTMYEQNGNINKET
ENLKRNQKEILELKSTITEMKNSLEGFKGRFEQAEERISKLEDRTTEIIESEEQKEKRLKKSEQSLRDLWDTIKRTNIRI
VGVPEGEEREKGAERIFEEIMAENFPNLMKDMNINIQEAQRTPSRMNSKRPTPRHIIIKLSKAKDKERILKAAREKRLIT
YKGSSIRLSADFSSETLEARRQWADIFKVLKEKNCQPRILYPAKLSFKSEGEIKTFPDKQKLREFVTTRPALQEMLKGVL
QGEMKGH
>L1_RN_pol#LINE/L1 Full L1_Rn 2441-6262 via tfasty with L1_MM_2003-5905, 7 frameshifts.  [Rattus]
MNITGSNNHYSLISLNINGLNSPIKSHRLTNWIHNEDPAFCCLQETHLRDKDRHYLRVKGWKTNFQANGQKKQAGVAILI
SNKINFQLKVIKKDKEGHFIFIKGKIHQDELSILNIYAPNTRAPTYVKETLLKLKAHIAPHTIIVGDFNTPLSSMDRSWK
QKLNSDVDSIREVMSQMDLTDIFRTFYPKAKGYTFFSAPHGTFSKIDHIIGQKTGLNRYRKIEIIPCVLSDHHGLKLVFN
NNKGRMPTYTWKLNNALLNDNLVKEEIKKEIKNFLEFNENEGTTYPNLWDTMKAVLRGKLIALSACKKKQERAYVSSLTA
HLKALEQKEANTLRRSRRQEIIKLRAEINQVETKRTIERINRTKSWFFEKINKIDKPLARLTRGHRECVQINKIRNEKGD
ITTDSEEIQKIIRSYYKNLYSIKLENLQEMDNFLDRYHVSKLNQEQINQLNNPITPKEIEAVIKGLPTKKSPGPDGFSAE
FYQTFIEDLIPILSKLFHKIETDGALPNSFYEATITLIPKPHKDTTKKENFRPISLMNIDAKILNKILANRIQEHIKTII
HHDQVGFIPGMQGWFNIRKTINVIHYINKLKEQNHMIISLDAEKAFDKIQHPFMIRVPERIGIQGPYLNIVKAIYSKPVA
NIKLNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARPIRQQKEIKGIQIGKEEVKISLFADDMIVYLSDPKSSTRERL
KLINNFSKVAGYKINSNKSVAFLYTKEKQAEKEIRETTPFIIDPNNIKYLGVTLTKQVKDLYNKNFKTLRKEIEEDLRRW
KDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPIQFFKELDRTICKFIWNNKKPRIAKAILNNKRTSGGITIPELKQYY
RAIVIKTAWYWYRDRQIDQWNRTEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFSKWCWFNWRATCRRMQIDPSLSPCTKL
KSKWIKDLHIKPDTLKLIEEKLGKHLEHMSTGKNFLNKTPMAYALRSRIDKWDLIKLQSFCKAKDTVVRTKRQPTDWEKI
FTNPTTDRGLISKIYKELKKLDRRKSNNPIKKWGSELNKEFTAEECRMAEKHLKKCSTSLVIREMQIKTTLRFHLTVVRM
AKIKNSGDSRCWRGCGERGTLLHCWWDCRLVKPFWKSVWRFLRKLDIELPEDPAIPLLGIYPKDASTYKRDTCSTMFIAA
LFIIARNWKEPRCPSTEEWIQKMWYIYTMEYYSAIKNNEFMKFVGKWLELENIILSELTQSQKDIHGMHSLISGY
>L1_Ele19_pol#LINE/L1 1298-4501  [Aedes aegypti]
MDFHSYNIGTININNITNENKLNALRHFVRQQDLDIIFLQEIENDSISIPGYNSVCNVDHTKRGTAILLKDYIKYSHVER
SLDSRLISVRINENITLCNIYALSGSQHRASREAFFNNTVAFYLRNQAEYTIMSGDFNAVTHPKDSTGVSNYSMALKNTT
QQLRLLDIWEILHGNRVEHTYICHNSASRIDRIYISSNLRPHVRTTTTHACSFTDHLALTARLCLPTMGREHGRGFWSLR
TNVLTDETLEEFERKWSYWTRQRRHYSSWMLWWTAFVKPRLQSFFRKQSKDMSREFYTQHQHLYTQLREAYNNYHGNPAA
LVEINKIKSKMLMLQRKNTQMFQKINETCLAGEPLSVFQLGERIRKRTVINEIEVSNGNIIEDPLAIQEHIVNYFKDLYS
ETTRLEARETFTCERQIPANSNKNNTSMDPITTNEIFAALKGSAARKSPGSDGIPREFYLWAFDIIHRELNLLLNEALGG
NILPEFVNGIIVLVRKKNTGNTIKSFRPISLLNYDYKLLARILKSRLDGIMTDHNIISNVQKCSNGKRTIFGATLALKDK
IAQLRKHRRSGKLLSFDLDHAFDRVDRRFLFGTMDSLGFNAGLIHLLSSIAELSSSRLLINGHLSAPFTIQRSVRQGDPL
SMHLFVIYLHPLLHRIQEVCNGQFDLVVAYADDVTMISTCVEKIERVKQLFLNFGRCSGSLLNLEKTSALDVGYITARNR
VDVQWTQTTDSVKILGVIFTNSIRRMIILNWNTLIAKMAQQIWLHKMRFLSLHQKVLLMNTFISSKMWYISSILPIYKLH
IAKITSLISSFLWQGQVVRVSMHQLALPKEKGGLNLHLPAFKCRSLLMNRHLCEMECMPFYRTFIESTQNPPNLAALPTD
CPCLKQICQEFAYISQDVLAISTSSTLHRRLLSQIETPKVMRESPNLNWKRIWLNVNSRQLNSLERSCYYLLVNKKILHA
KLLHRMNLLPSPVCEHCGVADEDLQHKYXTCTRTANAWTIXQQIINVFVPNRALSFEDMMKPTLLCLEQRTKIKIMKMFI
CYVNYINSEDNLIQLDSLKFHLEIICNE
>L1A_Oc_gag#LINE/L1 127-1183 via tfasty with L1M2_5end_1476-2645, 1 frameshift. [Oryctolagus]
MPSNKHRNRGSKINDDTMMPPNKQNTPSQEYEDDEIEEMQDTDFKKFMIRTFRSFQKQILELQKSLMDKIENLSRENEIL
RKSQNETQKLVEQESVIVKRNQNEMKSSIDQMANTLESLKNRMGEAEDRILDLEDRAQESIQSNQRKEEEIRNLKNIVGN
LQDTIKKTNIRVLGVPEGMEREKGLEGLFSEILAENFPGLEKDRDILVQEAHRTPNKHDQKRSSPRHVVIKLTTVKHKEK
ILKCAREKHQITLRGSPIRLTADFSSETLQARREWRDIAQVLREKNCQPRILYPAKLSFVNEGEIKTFHSKQKLKDFVAT
CPALQKILKDVLHSETQKHGHQYERRERKNTYQ
>L1MB1_pol#LINE/L1  [Eutheria]
MAIVSPSLSIITLNVNGLNSPIKRHRVAEWIKKXDPTICCLQXTHFRFKDTHRLKVKGWKKIFHANGNQKRAGVAILISX
KIDFKSKTVXRDKEGHYIMIKGSIXQENITIINIYAPNIRAPKYIKQTLTELKGEIDSNTIIVGDFNTPLSIMDRTSRQK
INKETEDLNNTIDQMDLTDIYRTFHPTAAEYTFFSXAHRTFSRIDHMLGHKTSLNKFKKIEIIPSIFSDHNGMKLEINSR
RKTGKFTNMWKLNNTLLNNQWVKEEIKREIRKYLETNENKNTTYQNLWDAAKAVLRGKFIVINAYIKKEERSQINNLTLH
LKELEKEEQTKPKVSRRKEIIKIRAEINKIEXRKTIEKINETKSWFFEKXNKIDKPLARLRKKEKTQINKIRNERGDITT
DATEIKRIIRDYYEQLYANKLDNLEEMDKFLETYNLPRLNHEEIENLNRPITSKEIESVIKNLPTKKSPGPDGFTGEFYQ
TFKEELMPILLKLFQKIEEEGTLPNSFYEASITLIPKPDKDTTRKENYRPISLMNIDAKILNKILANRIQQHIKRIIHHD
QVGFIPGMQGWFNIRKSINVIHHINRMKDKNHMIISIDAEKAFDKIQHPFMIKTLNKLGIEGXYLNIIKAIYEKPTANII
LNGEKLKAFPLRSGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQIGKEEVKLSLFADDMILYXENPKDSTKXLLELI
NKFSKVAGYKINIQKSVAFLYTNNKXSEKEIKKTIPFTIASKRIKYLGINLTKEVKDLYTENYKTLMKEIKEDTNKWKDI
PCSWIGRINIVKMSILPKAIYRFNAIPIKIPMAFFTEIEKTILKFIWNHKRPQIAKTILRKKNKAGGITLPDFKTYYKAI
VIKTVWYWHKDRHIDQWNRIESPEINPRIYGQLIFDKGAKNTQWGKDSLFNKWCWENWISTCRRMKLDPYLTPYTKINSK
WIKDLNVRPETVKLLEENIGEKLHDIGLGNDFLDMTPKAQATKAKIDKWDYIKLKSFCTAKETINRVKRQPTEWEKIFAN
HISDKGLISKIYKELLQLNNKKTNNLIKKWAKDLNRHFSKEDIQMANRYMKRCSTSLIIREMQIKTTMRYHLAPVRMAII
KKTKNNKCWRGCGEIGTLVHCWWECKMVQPLWKTVWRFLKKLKIELPYDPAIPLLGIYPKELKSGSRRDIXTPMFIAALF
TIAKMWKQPKCPSTDEWIKKMWYIHTMEYYSALKKKEILPYATTWMNLEDIMLSEISQSQKDKYCMIPLI
>L1Ci-A_gag#LINE/L1 gi|34392580|dbj|BAC82622.1| gag-like protein [Ciona intestinalis]
LRKDNKIKHTFLYESENIEVLIGWVPVPLQNKSIAEALQYYVAVQEVRSKKDKNGKLLGTRIAVIKKNDIDRSPLPSYIR
VEGEELYVTYSGQLRTCKLCEQTGHKQAECPNRKNEFPALPQARSVSNAPRAPDALTSPDKNMASEPAGKNEDKENAPKE
TEAKTTNIITTPKRKRRLVQSPSVDQPSPKSLSHGGENYGVKCGNCHREGFVHESNDRFYCFHCRTDFSVATPCCATNDR
FLVAKNAKYTNCLYCKQKLIRTPCCHEYTPERNCIDNKLECLYCKTWSVMCSCHDLNVIPPKTTSITCNNTNCQRTILHC
DCDKIVSSKLKDDKFLKCVCGKEFEIDTTNSGRET
>Crack-1_IS_gag#LINE/L2 388-1296  [Ixodes scapularis]
MSDEDDDVCPKCHEVLSDDKPNITCPECQFTYHFGTCCGIAESTFKARNAKSQKAWRCETCSVAKRSQTGKAKKDAEIDV
NSLLTSMNLKLNSLLSMKETVSAVETSVQNMSDQYDELLKSVGQHDKDIKSLTKRVEKIENAGTEGQLTELKRELNRLEW
HNRKQNLEIHGVPQTANENLLSLVNEVAAKLDVPTLVPCEIVSMHRLPSKPEKIPGIILHFTQQQTRDRWLDKRRNLKRP
NDNEYILENMTRQDKALLWSTKQWAREHNFQYVWHRNGNIFVRRKTGDPAKTVKSEHDLPNMS
>Crack-1_CS1_pol#LINE/L2 1336-4386  [Capitella sp. 1]
MVFNTFLIDEDSIMDELNDIDPDLCYYNQVIANMNCEYYSENNFNEKLNNRNNIQATTPFSLIHSNVRSFFANGNDLTHS
MDLCDHQFSIICLSETWLTPSTYLSAAIPQYNHECRYRSKKSGGGVSIFIHNSIQYSPRHDISIFNEDIESIFVDIDKSV
INTDRNVIAGCIYRPPKSSISEFNESLRSILGKLSKENKDAYLAGDFNIDLLSVDSHLQTSEFLEILFSFSFFPSINKPT
RITASSATIIDNIFINNLHSKSITAGILAIGISDHFPVFCSTPVNMSQSPPREHFSNVRILSERNKIKFESMLRQFDWTT
CIQQTCCQSAFSLFYFQYKKCFDECFPLIKTKSTYKNKKPWLTGALKTSIKAKNKLYRKYIKSKLEQDLNTYKEYKSKLK
SCLRRAERAHYDQLFTQYKSNLRKSWALIKDLINKKSTNKSQSFKINVNGVETSNMSTITNAFNDYFVNIGPSLAQSIPN
TSKNPIDYIRASASRSMYLTPVTELEITNIIREMRDCAPGPDAIPSAILKETATIFIPVLTQIINLSFSEGVFPNDMKCA
KITPLFKSGDKTSINNYRPISLLPSFSKIIEKCMSKRLLAFIDEHSILYKYQFGFRPKYSTNMAIHLLVDKIVSCLDKGE
NLVGVALDFRKAFDTVDHLILLKKLEAYGVRGNAYDWFASYLARRTQYVEINHTRSSSLEIKCGVPQGSILGPILFLIYI
NDLPFSSKLMPIIFADDTNVFLGGKSINQCIETINIEMNNLSKWIQCNRLSLNVTKTNYIIFSKSKVLSANLLPLTINNT
VIDRVYSLKFLGIVIDDKLSWSEHIKYIRGKISRSIGMLSCARKNLDRKTLIQLYYAFIYPYLSYCIDVWGHCSQQLFLS
VFKTQKRALRIISFSKRLAHTEPLFKSFEILPLQAIYILALSKFMYKFYFRLLPSVIDELFQSNNSVHSVPTRQQNLLHV
PHVISETSRKSIRVRGVSTWNRLAQNININSFSFNKFTRIMKDKLLNDNVFSISITQ
>Crack-1_SP_gag#LINE/L2 273-1043  [Strongylocentrotus purpuratus]
METVTMEAFQKALQSETYNSIIQGAIQTSVNREMCSILQRLEMNESKIMDLEVSLKIKKAEVVQLSKHVEEQANIIKALK
NVTNDQEQYSRRNCLRIFGVSEKKGENTDEIVCELATKKLGVSLKIGDIDRSHRVGPRKPEQPNEPEQLNGPVGPQREAT
TLSGKETKTRHRPIIVKFASYRARRAVISQRRKLKQSKMGIEEDLTRTNQEILLKTRNHNKVVAAWSSDGRIIALMKATG
GNTIKKLIKSLDDLKYL
>Crack-2_CP_pol#LINE/L2 1405-4311 [Culex pipiens]
MSVLNYNYECIEECITNKAELGFHASFRVFQWNIRGMGSLTKFDVIKEFLDRYNERIDVIVIGETWIKEGCQDMYVLDGY
KAVFSCRRSSHGGLAMFVREDLHLNLTEVRHTEGFHIIDADVQACGRDIHVIAVYRPPGYPFTSFLDIIDDKLSRTKKDQ
QFFIVGDVNVPTNLPADNVVREYSRMLSSHNLKVTNTTVTRPASGNILDHVVGSIGLGANLLNETIECEVSDHSMILSSV
NFKVPKVTQILEKRIINHTLLNQRFANVLANLRSDLDANEKIKEISARYNDVLNASSKVVTIEVKTKGYCPWMSYDLWYL
MRMKENLRRRSKTHPSDSHLKDLLKHVSKTLQDKKEKAKREYYHNLIHNSSEKNSWKLINEVMGRKTKTKQEISLKMNGE
TISDTSQVANALNEFFCSVGAELASEIDSDKNIWKFQSLPSCNLSLFLRPATLEEIILLIKDLNVNKAPGPDGVPATVIK
THHLAFANILLEVFNEIISTGQYPESLKLARVVPVFKSGEATNVNNYRPISTLSAMNKIVEKLIAKRISAFLSANGLISN
FQYGFRQGSSTLTATNELLEDIYGHLDNRRFSGALFLDLKKAFDTVNHELLLRKLERYCIRGIPNKLLRSYLSNRLQFVS
VNGFSSDHLHIATGVPQGSILGPLLFLIFINDLPRMTWRGQIRLFADDTVLLYGNADSTRIAEDIKADLQCLLEYFKSNL
LSLNLGKTNYMIFHSAWRNVPVLPAVLVEDVEIQRVSVYKYLGLILDSKLNWELHIDHLKQKIAPICGALWKMSSFVPRT
WLLKLYYTMVHSRLQYLTAVWGSARQVRIRELQSLQNRCLKVVFNLPRLYSTQMLYEDPRHSALPIRGLHAIQNITLTHN
MINDPETHHNLELPTLNSGRPTSSTGDLRLTRPNTELGKNRFTYIGYKLHNLLPVPLKLVTSKQSFKQRLRSLLKSTVSC
FLAANDVRL
>Crack-2_BF_gag#LINE/L2 392-1165  [Branchiostoma floridae]
MPNRRNQKESADDDYVTMKEMKEMLEQIKQHYEDKIDQNKQYYEDLLKRQESIFQNFTKMLMDSANSRVDSLVREVQDLK
TSLQFSQNEIDSLKVEIKDAKKSSNVDDESAVAKKVDYLENQSRRNNIVIDGIEGDNSKETWAETEGKVRDLLTKNLKLE
AKDIEIERAHRNGVMNKDNPRPRQVVVRLLRYKDKQLILNQARSHLKNTPIYINEDFSEAVRKRRAELLPELKAARSRGE
YAVLSYDKLVIRKKTKP
>CR1-86_HM_pol#LINE/L2 3-2749 Fragment, via tfasty with CR1-65_HM_pol, 1 frameshift and 2 stopcodons. [Hydra magnipapillata]
EINSNFFLPGYNSIHQPRKNGIGGGVCIFILNSFTFRKLLSLSVNDANCESLSIEILNRKTKNIFITSLYRPPNGNFEAF
EKHLKNILPKVIKKHIYITGDFNIDIQKINNDSYAKRFVNTLLQNSLIPVINKPTRVTRNTSSIIDNIFTNVAMTCQIKS
GILKTDISDHFPNFLINYSLISESKNSFVTYVRQINNQSIIKFRELLTEIDWNLLTECNDANDAYNLFLRLFSKQYERSF
PKIKKTTNSIKINNPWMTNGLRKSSRKKQRLYEKFxKNKTYNNEIKYKKYKNCFERIKKQIKKSYYSNLLEHSKGNSKKT
WEVIKEVTGKKQLHKSTIPNRIKLNSNREIFDKKEIAENFNKFFINIGKKLAADITPGNKTFQSYLKKTHYVMDESELSL
NELQASFNALKINKSAGFDDINVNVLKAVFDAIKLPLLFIFNLSITTGIFPCQLKIARVVPVYKNGDDSIPSNYRPISIL
SCFSKLLERIMYNRLYSYLEKHNILFSKQFGFRKGHSTHHAVTDLASQILDGFAKKSYTLGLFIDLSKAFDTVDHKILLY
KLETYGVTNNYLKWLQSYLKNRKQGVSYDSTCTKLETISCGVPQGSILGPLLFLIYVNDIYLSSNMLNFVLFADDTNLFY
THSNLKSIFFTVNRELENLNDWFKSNKLSLNISKTKYILFHNQSKSNDLPLQLPQLIINNNIVNRVSSLKILGIIFDEHL
NWKNHITLIENKISKTIGIMYKTKHLLSKKCLIDLYYCFIHSYISYCNIAWASTYPSALKNIYIKQKQASRVIFHVHKYA
HSKPLLREIKALNVYELNVFQNLLFMFKYQNDMLPKSFNNRFVKINHKYLTRCSTSFLLITxLLITSDYSISYRGPRLWN
IVLNENMKSITSINCFKNIVKQYLLELTDANIFLHF
>CR1-57_HM_gag#LINE/L2 45-797   [Hydra magnipapillata]
MEITMKNIEILISNKLDEHRKSILKETEKLLKEQEKTFTLIVSGNLKIISDKLNVMEKEILENKSKIKNIEKDLNDVKDS
LNFQEEKTLEKLKKIKKYFDNEINVLYTRTTDLENRSRRNNLRIDGLVEKPGESWSECEIAVKEIFNKNLKISSEVVIER
AHRIGPINNKKPRTIVLKLLNFQDKNKILNAVKNLKGTGVYINEDFSQETIEQRRKLWEEVKRLRSEGKYAILKYNKIFS
RDFKK
>CR1-48_HM_pol#LINE/L2 775-4176 via tfasty with CR1-42_HM_pol, 3 frameshifts and 1 stopcodon. No obvious gag upstream.  [Hydra magnipapillata]
MALNCHLCKKLISQSCRSSQCNICLFWSHTKCDRLNDTKYSLLQLSRSLRSCLNCIKSVFPFTDVQDNEFKLLFSSDIIL
KTDDLPLSTNLFPSFHLNKVSNQINNYVSSRVLDSEEEISSSLDIFCKYYDISELCTLNFNKISALSFFHLNISSLQKHF
EDLNIILSLINFDFSIIGITETRLKKGTSSIHPILIDNYNIEQTPTESSCGGTLLYLSKKLIYKRRDDLMIYTPNCLEST
FVEVIFSKKSNIIVGCIYRHPCMDINIFNNIMSVLLQKISAENKSVFLLGDYNIDLMQSNNDIATSDFLNLFSFYNIRPF
ITLPTRITDHSATIIDNIFSSLIANEIVSGNLTTSVSDHLPQFCICPNFNKLFIPRRHNLYSRSFKNFNKENFKSDLSKI
DWDDITKSNDTNTCFQTFITETTLILDRYAPLKKISIKNFKRRFKPWITKGIIKSIQVRNLFQKKMLRSKDLINKKKFES
IFKRYKYIIVTLIKLSKKNHFKNFFSENVKNLRELWKGINTLINVKNLNKSSPNCLQENDTYITDPTLISESFNTFFTNV
AHKLKSNIHSSYINYQKYLKHPNLHSLLLSPTNISEISSLISKLNPKTSLGPNSIPTNILIDFNYDFSNILSKLFNTSFI
NGKFPDILKLSCVIPIFKNGSKLSCTNYRPISLLSNISKLLEKTMYSRVYSFLNSFNCLNDFQFGFRSKHSTCHALISIT
EKIRKALDTGHFVCGVFIDLQKAFDTVDHSILISKLKHYGIRGIVNDWFRSYLSDRKQFVSINGFNSSYKSVLCGVPQGS
VLGPLLFLIYVNDLINSVHFSSVHLFADDTNLLHINKSYHSLCKNVNSDLKGIVHWLNANLICLNTEKTELIFFSSPRKN
NFFKNVEIKIKINNKRLYPSRVIKYLGVLIDCNLSWNFHIDDxARKSRANGMLSIIRHYVNKVTLRSIYYALFSSHLSYC
CQVWGQVGNYRINKLLSSQRQSIRLINFQPIKSDTSKSFKKLFIPTFPALVKYANLLFVFDSLNKNIPSPITNLFTESRL
LHSYSTRNIHNGKLNVPSFKTQKYGKRSIVYQCVCEWNRSLACILNESKKIYPKIPLLHLKQYQFKKILKNIFILTFWHY
YPYDLNIXLVFFS
>CR1-73_HM_gag#LINE/L2 59-826   [Hydra magnipapillata]
KKDKSKMSVTLVEVKKMLKEMFLEYRKEMETMLKQQQQIFIEILSANTKIINERLDKVEENSKESANKIKIIVKDIEDIK
LSLNFHDEVFDKKIATIHKQNNDRVEKENITTQNINEKLRKFEDRSRRNNLRIDGLPESVKETWNETEDKVKLFLVNKLG
LNGIEVERAHRTGARKEGSSRTVIMKLLRYNDKTKILKESYRLKGTNIYLNEDFSHETVNIRKRLLAEVKERRDNGENVG
LRYDKIIKLNNIKKK
>CR1-82_HM_gag#LINE/L2 62-802   [Hydra magnipapillata]
MDLTLKNIEKLITSKLEEQKAYILSETSKLLKEQEKNFTVIISGNLKILAERLDKLEXEVKRNKSNNTIIEKDIHEIKES
LNFQEANVTEKXEKVKANLGYDINYLVKKTVDLENRSRRNNLRIDGVKEIEGESWEDCRNSVKEIIKNKLKISEEIEIER
AHRIGSAREDKXPRTIIFKLLNFLDKTKVLNSAKKLRETGIYINEDYAKETIEHRKKLWEEVKRLRKAGKYAIIKFDKIY
CREFKK
>CR1-80_HM_gag#LINE/L2 14-730   [Hydra magnipapillata]
MAITLLEIQEMFILHKKEIQLLFKEQEKVFVGLLSDNLKILNARLDNFEKKLSDYDKKIHLLENDVKDLKESLNFHENLI
DQKIKAAKEIETPNIINILNEKCRISEDRSRRNNLRIVGIPENANESWDETEEKVQNLLCNKLGVKGVEIERAHRVGPKK
EAQSRTIVLKLLRFKDKSNILKETKKLKGLSIYVNEDFSQETASLRKKLFTEAKERKSKGENVIVRYDKLIILKKGLQ
>Crack-3_HM_pol#LINE/L2 1023-4544  [Hydra magnipapillata]
MAFMNDFESISFNFFEGNHFSSDKNIDPDNNFYYDTFTDCAYFYPKELEGFLFQNAIKKSSNQIRILHLNIRSLNRNFEK
LLNLLEETKNLFNIICLTETWVTLNDFDNNFNIPHFKIISQERKTSKRGGGLLIYVHESIFYNMRNDLSVSDGDKEVLTI
ELLLEKTKTFILSCCYRPPDGVSENLSMFLQHIVNTSDAEKKKSFVIGDFNMNCFLYNDEYKVKKFYDTIFETGSIPLIN
RPTRVTINSATLIDNIITTDIFNKDIQKGILKTDISDHFPIFLIINSNLEKNINTPTVVRKRVFKQKNFELFKDQLSLLH
WNHIDFNDNANNIYEAFYKTLFSVYDANFPIVEKIIKINKSSKSPWITKGLKKSSKIKQKLYIKYLKTKTSASEKIYKNY
KYLFEKIRKNLKRNYYSELINKFKNDLKRTWQIMKEITGKQKSCLGFLPQMIKVDNISLYDPRAISHEFNKFFIGIGPSL
SNRISNTTASFNDFLVPMDNCICSDELSSELSFEEFEVALNSVKRNKATGADEINGNVIIDCFDILKHILFKVFRASINQ
GIFPEQLKVAKVTPIFKEGDRSNISNYRPISVLSVFSKILERIMSNRIYKHLNKNNLLYNKQFGFKKDNSTEHAIIQFVH
EISKSFEKSQYLLGIFIDLSKAFDTVDHHILLQKLEYYGINGIALKWFRSYLTKRKQFVISNDGYQNNCLDIVCGVPQGS
ILGPLLFLIYINDLNKASNLISIMYADDTNLFLSNSNIYELFTTMNKELKHISNWFKCNKLTLNINKTKWTLFHSHAKKR
FLPINLPQLFIDEIEIKNDSVTKFLGVYLDENISWNQHINYISTKISKNIGILYKARNYLNKNCLKQLYYSFIHSYINYA
NTAWGSTVKSKLKLLYRRQKHAIRIINYADRFTHTKPLFTEMRLLNLFELNVFKVLCFVYLWRNNQSPTVFNNTFKLKPN
NKYDMRNINFLKEPFCHTKFNQFCIAYRGPHLWNNIVLLYKARNYLNKNCLKQLYYSFIHSYINYANTAWGSTVKSKLKL
LYRRQKHAIRIINYADRFTHTKPLFTEMRLLNLFELNVFKVLCFVYLWRNNQSPTVFNNTFKLKPNNKYDMRNINFLKEP
FCHTKFNQFCIAYRGPHLWNNIVLQNFDLPTSFYLFKLNLKKCIISLDNILRYF
>Kiri-2_AAe_gag#LINE/L2 267-1061 [Aedes aegypti]
MPDNDHTSRLRSNSLVKSSAKSTDADMTVAELANLMQSQLATYQRTVKEDFKKLGDSLSSISTEMTKLREDIASDIEKLR
EENNKTFNSLSTTIDEAKRDTSLALDRSARMNDLLVSGVPFVVGEDLSNYFRTWCNSFGYAERDHPLVDIRRLSKGTPTA
GTVYMILIQFAITVQRNEFYSRYLNSRSLSLSGIGFSVDKRIYINENLGPIVRNLRSKALQLKKAGKLRAVFTRSGVLFV
RRIGEDKEIAVSTENDLCLLAKTLS
>Crack-28_BF_pol#LINE/L2 14-3127  [Branchiostoma floridae]
MWEKATSNVHLQSGTWITQNAYSVKINPGLSGVRLIGRSTTCTERTERTLNLLVCATLLLAGDVSPNPGPDTGGLPVWRK
GIVYAFYNVVSLPRHLDEIQQLLLRNTRIHVLGLNETRLSDSIPDSSVDINGYTLYRTDRDRQGGGVGVYVKQTIASQRR
CELEQEDLEVCCVEIKPEKARKTLLTCVYRPPTSGPDWRNSAESLVHKLNQTAEKENADVAIMGDFNSDLLTSTQAMSSV
EFLMGLYQLVPVIREPTRITEKTESCIDNIFVSNPDRYKSSASVAWGPSDHNLILTCAKAGSEAGAAHRCEYRSYKLYTQ
QSFIDSLKSVRWDTVFDCTDVSEAWNAFKDIFLNVADEHAPLRTKTARENNRPAPWMTDTVKNMMGRRDAARRKAIRTKD
VQDWDTYRSLRNQTTSIIRKEKKSHFATAVSEAKGDQSLMWKIINSFTGKSKSTKRVQKLLRADNTSMSDPGEMAQEFND
YFTSCASRLTDGMPDSEEDPLRHIPDSTTKFSFDCVEETEVLNELQKLKTKKATGLDKIPAKLLKDSAPVVAKPLAHIFN
LSLASGEVPSDWKEAQITPVHKSGSCADVGNYRPVSVLSVTSKVMEKLVCNQVTRYLTRCKLLTTHQSGFRRHHSTATAV
QKVVEDITSGYNCSKVTVALFLDLRKAFDSVNHEIMLSKLKKFGFDSDAMKWFTSYLSERLQCTCLQGQYSSKTRVSCGV
PQGSVLGPLLFCLYVNDLPNVIQKCSIHMYADDTVLYYSAVSVKVCEETVSMDMKRVVKWLSENRLLLHPDKTKSMLFGL
PQKLKHAGTTVNITDGVNVYEQVDSFTYLGITLDPALRWAAHVQKITKKLLSGLGAMGRARAFVTNEVLKTMYQTLLLAH
LEYCATAWLPSLAQGNKTLMLQLDRLVNRAARLITGHKLRDHVTVDNLRAEAGIDSVRKRTEITTLVTVFKTIRGKAPAY
LASLFKWEAPPTMSVRPTRSEVKRLRDYDPHLLWCPPARVIAFRNSLQSYGPFLWNSLPLKQRQLLSLRTFKKFIEN
>Kiri-2_AAe_pol#LINE/L2 1311-4238 [Aedes aegypti]
MICMILFVSKNVIFNEVLFYHSPLLVKSFFYLMANNPNFYTSTNWCIPGTVIKSALIRNKLSVCCVNSQSICARKLCKIE
ELRAIVSVSKVDIVCVSETWLNENVNSSILSIDGYNIVRHDRVGRLGGGVLIYIKCDIPFNLVAKSDNQSGVAITEFLSI
EVILQNEKLLLTAFYNPPEIDCTEPLEHLLALYGNTYSYVYLLGDFNTNLSVSSPKSNRMRSILSTYSIQCLGSEPTFFH
KNGSSQLDLILTNDVSKVLRFSQIEAPVLSNHDLLFASLDFEREVHPIKVEYRDYNAIRIDSLVNAFYSADWRSFYRSND
SNQQLEFFNALLTDLHNLYVPIRTTNSNKKFSPWFNNEIGKAIVDRDLLYKKWKNTKNANDLQAFKRARNSVNSVIRLAK
QNYFSSRLDPNLPAKELWKNVKMIGINPPSMQTTNSFTANEINHMFCQNFTDNFSLDQSNVTNYVDREPFYFDRIDETDV
VYAMNSIKSNALGLDMLPMKFLKAICPILIKPITHLFNSIIITSAFPDAWKKSKIIPIKKKSNLNSMDNLRPISILCALS
KVFEKIIKSNISCYISRFNLLSQFQSGYRSKHSTKTAMLKIIDDIGVVVDKGRPVVLILLDFSKAFDTVSHAILCRKLKT
KFSFSDHAANLIESYLCSRSQAVFNNGVLSSFLPVTSGVPQGSILGPILFSLFINDLPCVVKNCQIHLFADDAQLYYKCF
ENTSTKISQDINDDLQRIDDWSRENKLTLNTRKTKALFISNCAFLNSLKPFLKLNNEVIEFVEHATSLGIRIESNLEWDS
YILSQCGKIYACLRTLSKCASFLPSRTKLKLFKSLIFPHFLACDFLLDSVSLLTFNKLKVALNTCIRYIFSLNRYSSVSH
LHHLLIGCRLENFSKLRCCLFLHKLCSTKQPDYLYSKLQLARSTRYKKYILPRYHTTKYGNSFFVRGVVHWNSLPINLSN
DKSYLAFKRGCEEHFK
>Kiri-11_CQ_gag#LINE/L2 346-1434 [Culex quinquefasciatus]
MEEIKCNQCNKVDPPGKRGRKSAKNKNVNKPKIDWIECDGCSAWYHSVCVRVNEALLGNMNEYYYFCEKCPLRGSLVSKP
AHPAPASPAAPAGPSIQEIEQLKQTISDLAAQLVKIQAEVDSVRTTSKKQHDRLQSKLNSADQRDGQCAAQSALINNIEQ
KLEIIEAGARLASTCSQSVNSCRLAINKIPAREGENLRGIVESVINFLGVPQEMSHITSCFRLEVKPSKWSDRSLTPTIV
AVFDNRESRERVLRRYFEKHKDAKLCHLKHAPDLEYRFTINEMLSVHAFRIRNLALRYKQRKAIRSVFVRNDSISVLLPG
KQRYTPVNSPEHLLELLGHDHQADESSVFFDARSLDVSSSSRC
>Kiri-3_CQ_gag#LINE/L2 104-883 [Culex quinquefasciatus]
MSNRSTRSNSVPSLASLFELENGNQNKRSRKELNKDSVPTMSLEDLWTKIESKMDSFKQDFDKRIDGLETQLSQLKTECT
ARIDDLSEAVVEVRADLNLASNWIGRVEKYQDLIITGVPYSPTENLKTVFRDIAAKLAYDPLDVPMVDLKRLAKPPIAAG
SAPPILCQFAIRNERNAFYSKYLSLRNLNLEHIGFNNKNRIFINENLTPQDREIRTAAIKLKKEGRIQQVFSRDGVVHVK
SRGGPAEACYTVEHLRSCSK
>Crack-19_BF_pol#LINE/L2 3-1976  [Branchiostoma floridae]
TDRVKNLMGQRDAARRKAIKTKDTKDWELYRSLRNQTTSMIKKAKKTHFESAITDAAEDSSLMWKIINTFTGKTKGKCQV
RKIRRSDESCISEPSEMAEEFNNYFSSCAADLARDIPVSEEDPLRHVPEATSTFRLRPVEETEVLNELLRLKPKKATGVD
KIPSRLLKDSAPIIVKPLAHIFNLSITSGEVPDDWKLAKLSPIYKSGNKDSVSNYRPVSVLNVASKVMEKMVHNQVSHFV
NSTGQLTAHQSGFRKHHSTGTAVQKVVEDIQSAQNNKKVTVALFLDLRKAFDTVNHQILLGKLQKMGFDNGAINWFRSYL
TDRFQHVDIQNQQSTQKRVTCGVPQGSVLGPLLFSLYVNDLPQVVRKCKIHMYADDTVLYCSASLSKECEETVSEDMKLV
ANWFIVNRLSLHPDKTKAMLFGSPQKLRHAGNTVTVTDGFNSFEQVKVYTYLGVTMDSSLNWSAHTERMVKKLLAGLSAL
SRAKPYVTKEILLVMCRTLLYTHLDYCDTAWLLSLFHCNKVRSQQLTKLLNRAARIITGRSLKDRVPTETLLTEAGMVPL
VERVKLNTLVTVHKAVRHKAPAYMTQMFKWLSPPVLRVRTRTATKQLYNFDPHMLDTPKAHVETFKGSLQYLGPVLWNSL
AADQRKHTSTSAFKNGL
>Crack-4_CP_pol#LINE/L2 979-3960 [Culex pipiens]
MEDIEQYLDFQHNNKYFDKIDDYDREFQNFNGISILQVNTRSINKIDRFDNLKTQISKLIFKPQIIVVSETWIPINLIQL
YNIDGYESFFSCRRDGRGGGLAVFVSKKLNFSVTVNQEVFSNSNSFHFLQLIVTGSSNKSLIISAYYRPPDDTILTDFLQ
HLDNTLDSGDSAHVVVGDINIDSNSSSRKLDKYLNIISSFGFAITNTNLTRPSSESIIDHVLFNYHDNFSIINDTIYNPD
SDHNFIISSIDFTLNNNPPDIRYKLHTNYTKLQQLLEMRFSPAYMGNYEDPNAFYDYFINTLTKSISESTTKYLIKNKTS
ACPWVNDNLQSLYNSSRNLKKKKNKLLSQGKNVDHIEIKIEALSDKIKNCSSILYQNYYTDKFSGSKSTKDIWNNINDVL
GRKHKDKIPKTMTKLTDSGVKVTIDSQQTIANEFNSFFTSIGKSLANNIPKTLNDDINKFRTLKNCQRSFNLEPTNEYEI
INLIDSLSNNTSCGHDKISAFILKKVKLIIAPILTNILNLSMVNGFYPDQLKIARVTPIFKSGSNSLFNNYRPISVLSSI
NKIFEKILFQRLNHFLISTKFFCTQQYGFRQKSSTTNAVIDLVNKIQRHLNDKEDVLGLFLDLSKAFDTVDHNILLAKLE
RAGVRGIPLDLFKSYLSNRSQFVSFDGIKSNIKFIDVGVPQGSVLGPLFFIIYLNDLAFLSLKGKLKLFADDSSFLYNNK
SASVNDKNLHDDLKTLVEYFRINKLTLNINKSNIINIKNSNRSIPNRLTLTKNSFPDVKVIDECKYLGIILDNRLNWSPY
INSLLLKLNKITGIIYKIKHKLPLSVLLLIYHSLFSSHLSYITAVWGNACNILINKVQIAQNKFLRIIFNLPIRSHSVDL
YTKFKNIYPVRGIYIIQSCCFIYSCLANQTHSNTKFEPSTHNHFTRNHDSLQRPNVSTLAGERSITFKGAQLYNFFSNKF
GDCLSLSIFKKQLTNFLSEPAILEKLLKTYDFHI
>Crack-4_BF_pol#LINE/L2 58-3195  [Branchiostoma floridae]
MTNNLLSKTIMTTTSDQPSDQPLHETSNCDLSSLLFNPFDLNENVSESPYSSYDPDVNFFSYYHSSFKNTTQYYNSDSLN
TCLSSKSTSTSLSMFHLNVRSLPRHFEELNEYLYTLKHRFSAIALTETWLTDINCQNYNIPGYKSIHHCRQNKLGGGVSL
YIRDDLSYTERKDLEFEIDESGTQCIFIELCSSRDEGKKVIIGCVYRPPNTEIQQFNDQLTECMSKINKEKSTCFILGDF
NIDLLKTSHSPTNDHINNLFSSSFFPLVYKPTRITTHSATLIDNIYTNTLNSNLRVGIMVTDISDHLPIFLISGIEEPLN
NDTWYSYRQINETNKEKFIESLTRTTWDPVLEETDTEMAYEKFLTTFTLLFDESFPMKTAKIGQHSRRKPWLTRGLLKSI
KKKNKLYVKYVKNPTPLSESTYKVYKNKLNHTLRTAKKNYYHRKFTEASKNVKQTWNVINDLLNRSDKSKAAPHKIQTGA
RSITDKNKMCEEFNDFFVNVGPTLESKIPIVAKDPLDYIKTHLNRQLTSFEPPSTAEILDIVRNLKDSAAGHDGISAKII
KISLPYIICPLIHILTLSIQSGVVPKSTKIAKVIPIFKSNDSTSVSNYRPISVLPCISKILEKLIYNRLLKHLDQNDILY
KHQYGFRRGFSTSMALIQLIDKITTAIDNNEFTIGIFLDLSKAFDTVNHSILLKKLNKYGINDTALKWFKSYLSDRKQYV
TLNGYTSSCKLINCGVPQGSILGPLLFLIYVNDLAEASKIFFFILFADDTNLFLSHADYDSLIRLTNQELEKVITWFETN
KLSVNIKKTYYLIFCSKNKTYNKKNTNIFLKNLPLSQECQAKFLGVLIDDRLTWKPHIAMILNKISKTIGIIGKIRHLLS
QRTFITIYNSLIYPYLIYCNIVWGNAYKTSLHPLLILQKKFLRIATCSSFYTHSSPLFEKLRILNIYDVNRFQLALFTAQ
HINHTLPDTFDSFLNFRSQFHNYQTRQSTNLHIPLFRTSLAQMSVKYKCVKIWNDLPPSLKNLTSSLLTFKRNLKIHLLI
HPSPL
>Crack-5_CQ_pol#LINE/L2 1488-4376  [Culex quinquefasciatus]
MYNEIKNFSHDNIEDFNASYSLNENKFLKILQWNVRAINDLNKFDDILQTLDSSKTSVDIVVLGETWLKNDFCALYEIPN
YNSFFSCRDQSNGGLAVFVHKNSTSKLLKNVCIDGFHHIQIELIIKGHFYHIHGVYRPPNFDYGRFADYLENILSCTPVN
YSCIIVGDVNIPINRALHNISDRYLRLLESYNYICSNTVPTRPLSGNILDHVLCKVDDSCCLRNDTISHYLSDHSPIISS
FKLPIDKEKIKLSKTIVNHRKLNNAFDNFINNFDHVTDVSNSLLLITSTYNSLLEKNTRTVEKSITVKGNCPWMTFDLWT
LCKIKNNYIKRVKRNPTNQHLKDMLNHISQKVDDTKTKCKKLYYEKLLNVTNHSKLWSNIKVVFGVGKKNNKICLVNNGT
RTNNDAEVCEVFNNFFSNIGSQLAANIPRNLNSNPINNLSRIDHTIVLWPSNENEVITLIKSLKNKKSCGPDNFPVNILK
RNCGIFAQILSQCFNLMLVTGEYPECLKIAKVIPVFKAGDPDDCNNYRPISTLSVFNKIFEKLLVNRLVKYLSKRKILYK
FQYGFRQGSSTQTAILELVDDIIKEVDSKKSVGALFLDLKKAFDTLDHSILLKKLEMYGIRGLANDLIKSYLSNRKQFVA
INDARSSNQTIGVGVPQGSNIGPLLFLLYINDLGKLQLCGTPRLFADDTALFYPNKNINTIIESIEADLGVLKNFFDANL
LSLNLSKTKYMIFHSIRKVITEHEHPRLGNQEIEKVNCFKYLGIHLDPTLSWAYQVNHVEKKLAPLCGMLWRVRNFVPRH
VLLKFYFAYFHSQLNHLVSTWGYASSTSLKKIRTLQNRCLKTIFYKPLLYPTLQLYSELSHTILPLNYLRDYQTLVFVHN
LLNNPVMHHNITLPSAPHFHSTRQNDHLRREQASTNLGQRRISFIGPTKYNTLPLDLKQTTSTSIFKIRLKQHLKHKLHE
LFQ
>Crack-10_CQ_pol#LINE/L2 2-1153 Fragment [Culex quinquefasciatus]
LDNRDDVLGLFLDLSKAFDTVDRKILIDKLRYAGVRGIALDLFTSYLSNRAQFVCIDGIHSLLTLVNVGVPQGSVLGPLF
FIIYLNDFSLLPLKGDLRLFADDSSLFYNNKSTNMNDLNLRDDLTIVIEYFRLNKLTLNINKTNIINIKNSSRSIPNSLS
LTTSKFPDLEVVSDTKYLGIILDNRLNWSAHINALILKLHKITGIIFKIKHKLPQKVLFLIYHSLFHSILSYVTAVWGNA
CGLLINKLQVAQNRILKIILNLPIRSHTVDLYVKNNILPVRGIYVFQVCCFIYLCLNNKTHSNTKFVRSNHQYGTRYHDL
LNRPNVTTVPGERSINFNGAQLYNYFNNRFGKSSSLNIFKNQLKQCLSRPDIIEKLLKSVNIFA
>Crack-6_BF_pol#LINE/L2 20-3016  [Branchiostoma floridae]
MDHQSYCNLANSHEYWYCNQCLLPCFSDSFFNSSHDSTMDSSGEDNVDVCPSSCHMVPPTKGLTMGHLNICSLYNKLDQL
RVFMTSNNIDVMTLSETHLDDTISDAELHIAGYYLYRLDRNRSGGGVAIYVSEAFTHSRRSDLQQPGLEALFCQINLPCT
KPIIAGSVYRPPSAPVEFYTLLDNSLETLSLTSPNSELYLLGDFNVDLTQPRKPPSKALTNLTEKYQLRQLINEPTRVHQ
YSSTLIDHIYCSDMHYVNTSGVVQCTISDHYAVFCTRKAARRHSGVKYVSSRKFTKFDEQNYLADLSEIDWSPLYHADSV
DDAWTFFKSSFTTVSDLHAPFITKRTRDKQPEWLSPNIRKQMLVRNDLKAKARKTGSDVDWECYRAKRNMVNKMVKQAKA
KYCQNKLEENISDSKKLWGTIGEILPRKSSVVTKTLTWGGQQLVGLTNIVKGFNEFFATAGCRLAQCFGAYTHTPSCPDL
YKDLESTFKFTPLNDQDVLCHLKALPISKAPGLDNIHPRLLKAAAPIITIPLTYVYNLSLSTGTIPTEWKTARVTPIHKG
GDQADPNNFRPISVLPILMKIFEREVHKQFLAYLHAHNILSPSQSGFRPGHSTATTLLDVSDYILHNIDNGNLVGTVFLD
LKKAFDTVDHNLLLTKLTWIGLRGIELAWFQSYLSNRHQRVSLSGHTSDSVPINIGVPQGSILGPLLFNIFINDLPESIT
NCKVSLYADDTAIFCASNNPNHIESMLNAELSQLSTWFHNNRLTLNISKTKWMLMGSSKRINNCHDLEIKIDDICLEKVT
SYKYLGVILDSCLTYSNHVDMMHSKASQRIGLLRRLRPYLGTNVANMLYKAIVLPIVEYCDVIWDNSSSTLKQRLQILQN
RAARIILRRDPRANIEELHHTLQWRYLQDRRTQHLCIMVYKCLHGLAPSYLINTFNYNNQIHSYNTRQAQQLHRPKYTSR
TGQRTFAFRAVSIYNSLKPTTTSQTTLNSFKRALQSDL
>TX1_FR1_pol#LINE/L1-Tx1 1723-5621 via tfasty with 34392553_Tni, 2 frameshifts.  [Takifugu]
MSSFKIGSLNINGGREEKKRVLVXETMILKKINVMFLQETHSDVXNEADWCRRWEGRVFLSHGTALSAGVGILFSKSFNP
TSFTVDHVVQGRCLLITAQFDQFSAAFINVYAPNSGAERKLFLETLGNKLQXCGSVDYLFLGGDFNCTEDEVLDRNHAEP
HPSSQQVLRQLVYSHGLVDVWRRTHTGCRQYTWSHIRXDRVSLARLDRFYCFKHNFNVFKSCNIVPVGFTDHALVLCAVF
ISNILPRSAYWHFNSVLASDVSFKDALSYFWAGFRQRKGEFSCLKQWWDYGKTQIRMLCQQHTLNVTRHVTGSIRDLETE
XVELERLNESTGNGGSVGILKTKKMALANLLGARAQGALVRSRIQDISEMDAPSSFFFGLERKSGQRKXIHSLLSDTGQE
LTDPGQIRRRAVEFYTSXYKTDFKDGEDCFSGFSVFSQGLPRVSKETNHRMERPLTAQELHAALQTMQGRKAPGIDGLSV
EFYKAFWDILAQDVLEVFNESLATGSLPLSCRRAVITLLPKKGNLQDIKNWRPVSXLCTDYKILSKALAIRLREAMEQVI
HQDQTYCVPGRSMVDNVCLIRDVLEVSSSSGVSVGLLSLDQEKAFDRVEHNFLWRTMERFGFSAGLIAKIQVLYSNIESV
LKVNGSLCAPFRVCRGVRQGCALSGMLYALSLEPLLHKLRXCVQGLFLPGFNSNVVLSAYADDVVVFIKDQADIDAVLNV
XNKFCDVSSARVNWGKSEALVVSEWRQGLPVLPXGLTWRRDGLRYLGVYLGNERMVRKNWENVVEKVEEKLKKWRWXHXE
MXFRGRVLVXNNXVASLLWHRLACLEPPPGLLSQIQAKLVNFFWGGYHWVPQSVLFLSRDQGGQGLIHLASRTATFRLRF
VQRYLTGPPDLVWRDVASCLLRRVSNLGLDAALFLTDFKSLNLRGLPXFYRSVFKSCALFKWKKIQESSSLHWLLKEPLV
HGGRLDVCSSAMPGLMGALCGSRTVXLKQLVEAAGPALADARTLSXVLGLRSLRLVERSLELWRRRLSVRERSLLLRYGG
GRAEXDPTDAFPDLQLSPGCEEFSGPLLNAXCKSKLGLHGTDKXTFYLNIVKTINGLGLLDRAASVWTDRLGGQSPQWRT
LYKPPIKKRTGDXQWRILHGAIATNAFISVLNPAVSXXCPFCGLSETVFHVFTECSRLAGVFSVLXEVFNRFNXXFSVRA
FICXXXYKKAAQQKWQLXNFIRGEAKMAIYISRKNKIXKNGDCEAASVWRXNVRCRLRLEFGFYKMMNDLSRFREIWCYN
DVLCTVKEDNLQFAQPLVG
>Tx1-14_CQ_gag#LINE/L1-Tx1 156-1316  [Culex quinquefasciatus]
MEKRVRVNTLKVTFKRGSKEPTDAEMFQFCREQHFKPEEIYSVHKDKELGAIMIKLKNENLMRAAIQALQPVLNFSYSDG
TTTEVTVSDADNSFKYVRVFNLPPEIDDKEIYQALSQYGTVRQQVRERYHQDTGFPVFSTVRGLYMEISKEIPPQIRIRH
FQARIYYDGLVNKCFICRSPDHVKQNCPRRAAPVTKTPAQGRLYSDVAAVKSLLPGFLNRPLSETDSCQMTPLGKPVGGK
QSPPDKPEVPVEPMEAAMEQSEGLTSPPSALQVQLVESPVFRPNLEPEGTPDQGKQPDQEGKWQLQGRKGXSKKRPESFS
PGADTSKKLLRSQSLRSRSRSQRRHPKGVPETSEPQGALSTSDGQSDDQIFKKPLPPPSPSPEQQK
>TX1_gag#LINE/L1-Tx1 758-3085  [Xenopus subgenus]
MGGNKKESYKKTSLGSKAKGPEKPSCSSARKHQSEPMSKSPIASTSAAAANVTPAKTFAHAVATGSNPGQVTAGVEKLTR
KHGVRCLMSSTHGIEAYIKAAAEVVGHSAVVAASKMYGKAIIFARTLTAVHTLVQRGITVGGSYVPVEPLEGLGTRVVLS
NVPPFLQDHLLYPHLQALGELKSNMSRIPLGCKESRLRHVLSFKRQVQLLLPRGQDTIEGSFGVPFEGVLYKIFYSTEEV
RCFLCKNLGHTRQSCPKGQIKTTAPVPAPSASNKTSYPAGTISAGSSKGISPSLKNLKVAVTQPTSTTSKPPPSSLKTSK
AAACLTIAAKEKGGKHVKASPRVTVVPITKKCTPVMGTPEGVGVPMIATSVGVGADSGLSSSDAKKKRKFKSNWLVPEEW
ASVVNDGAPPSKGKKGSKTSAPHVVTLSGPTVGHDQPVSDHALLPPDQVGNNEVNGLHGLEHGSVGFPTESGVQYLPQNH
LEDLPLECKETPNETPAEWAVSVPEVLRFGNCNQPQFLVPQGISLQEGENIGLTPIQDPADKTAGKDGEGGVVDTEEGSQ
TTSTVHAKISLPLSSTDPNVIAIQKAQEVVERAEANHRASKALPVAGELISSVAPVSNTSKCVSSEVEGTPEPLQGLQKS
DSDTFPATTCGEILKALVERGDYQSLSQEELMDEGNIEEEVDIGVANPSTPIIPAEELKKFLESTLGVKLEKKMHMALEK
WHDLPLVINSVRQYIKVIKEAKNYGTAEYLRIMKFHKKCLSHQTLMKVKALPKTQ
>CR1-2_NVi_pol#LINE/L2 2206-5092 via tfasty with CR1-65_HM_pol, 1 frameshift and 1 stopcodon. [Nasonia vitripennis]
MDTFDYLDKFQNKSMQKERTCSNIENFNKVINNKKDIILHVNIRSINANFDKLKILIESLAIKPAIVICSEVFEQVNYNL
YQLNGSDYDYIIYYNDSRINRNDGVIVFVNNNLVQHTEVVEAGRIKIINTRITLNDKSSLEISAMYRSHGIPKTEFILDL
NKYLTKKRNVKNHLVIGDFNIDLLDCDHYSQDFLCNFLDKGYIPGFVGITKPPIGRAKGSCIDNIFIKSHNINTATYKIR
HDITDHYPIIIAVNKLKEVTKKPYVFLNYKKLTNYAIARNWNEIMSMDDPNLAVEKLLNEIKLCVELAKTKKKAKKHTGR
KNWITDAIVRSCETKEFLYNLWQLDVQNDQLKTQYKTYAKILDKVITDAKIKYESNLIQNNSNNPKKLWEIINMKIGKVK
KCNDAINYIKINNQKITDKFQIAQNMNTFFCDIGRNLSANIVKPVNTELKLPAMNPISIFLKPTSTAEIISIINALKLKN
GGVDKINAKTLKLLCKHIAGPLTHIFNKCIEKSIWPDSLKRAEVVPVYKSGEKHKITNYRPISLISNVAKIFERIIYNRI
HDFVEQSNIISKQQFGFMRKIGTKDALKYITNALYNNVDKSKPTIITFLDLAKAFDTVDHSILLAKLYCIGIRGQALDLL
SSYLSDRYQVVKIDGIQSDSSVVNTGVPQGTILGPLLFILYINDVLREIPPPPPRGYNLYADDTAIIATGKNWIEAQDTM
NNFLSVISEWLALNKLSLNVGKTVCMTFGSSIGSVPAQVNIKILDKNITRVEHFKYLGIVFDSNLRWENHMKHIIGKTKY
LVYIFYKISKTMPTETLRMIYYAFFHSIISYGIIAWGGAYRNSRDQVQKLQNKILKIINKNKFPSHDNPLNIVQLFALES
LKLHYYDLKEKYLASDSITRNRSIIIPKTNKRISNKNSYMKAINIYNELPNQLKVLNIEKFSQKRKIIEWIKSNCxKNIF
IY
>CR1-1_FR_pol#LINE/L2 243-3047 via tfasty with CR1-35_DR_pol, 8 frameshifts. [Takifugu rubripes]
MAVLNVRSLLNKSFIINDLILDRNLDGILLTETWLGTDAPAVLTEACPPDFNFLFSTRGGRKGGGTASITRTEMSSSEVS
FNKFPSFEHHAFVFSSPPILSITVYRPPQYSTSFISQFSEFLSIIYAKYNRILITGDFNLHINNASDPVSREFLNLLHSL
DFKHVTQPTHNRGRTLDLVITYGLSVGGSSVVDLAVSDHFCVFFNITSFNQRRAPVRTVRRRYLTPEVAANFIQILQSTP
AEILPAPCDFIVDTFNNKLKSTLDSVAPLVTKTVRTKRAPPWRNEEIRKLKRTCRSAERRWRKSKLTIHKEIFYQHLKTY
NNTIKQARTSHFKKLISDNKNNPKFLFHTIELLTNGNFNRCPTTTTDTLCEAFADHFRSKIDDIRSSLLSQQILINNTPG
SLLSPEETLESFVLVDARTLGRVFSQVRPTTCLLDPIPTPFFKTFYGFFEEHLLYMVNCSLQTGCFPTSFKTAVVKPLLK
KSNLDPGVLNNYRPVSNLPFLSKILEKLVFNQVNDFFKSNDILERHQSGFRMNHSTETALLKILNDIRRNLDNEKLTVLV
PLDLTAAFDTVDHHILLNRLKNLVGLSGTVLNWFTSYLTDRYRFFVSMDTCSSRIHETKRGVPQGSILGPTLFNLYMLPL
GDVIRSHGISFHSYADDTQLYIAVAPDDTGPLMPLFNCILDIQSWMAENFLQLNQDKTEVLVVGPExSERETFTKITLEG
ILIPSSQSVRNLGVIFDSELSFIPHIKNITKVGFYHLKNIARVRPFLSQAGAEVLMHAFVSCSLDYCNALLSGLPKKSIT
NLQLLQNSAARVLTSITRGREHITPVLESLHWLPVRFRIDFKVLLLVFKCLNGLGPTYLSDLLLFYQPSRTLRSSGTGLL
TIPHVSSKTHGEAAFSYYGPRLWNSLPENLRAAETVEIFKKRLKTHLFNQAFN
>Tx1-12_Crp_pol#LINE/L1-Tx1 2-3283 via tfasty with Tx1-6_AMi_pol, 3 frameshifts. [Crocodylidae]
REIVAGRLLQATMEANGTEFEVLCVYAPAKAKARYDFLENMALTMPSGWPVIIAGDFNCVISEEDRVSRAQRAGMDRSSR
LLKQLIEDHSLVDAGKEAQGPGGNFTRVDPAGQTKTQIDFVLLPKGWKVKGAHSTPVCFSDHCLLTIQAEMGGQLERGRG
VWKLNTRLLEDEKTQHSYREHYAGWRTLKSLYPNQTEWWASVKDRTKVFFQKAGKRRAFSHRRQHERLTHKLQDLHRQAA
AGWDVREDMREVKAQIGAWYREEARKKIFQARAPWVAEGEEWSAYFSRLKKSKEKPMTCLRDGAGAEHRSKEGMLETVTA
FYRELYTARREDPGAMQQCLQGLTRALGEAEQQQLEEEWTLEEVEQTLRRFNNGKTPGSDGLPKEFYVTFWDLVGPDLLE
LFRERLQEGRLGAGMDRGLVTLLHKKGPREELKNWRPITLLNFDYKLLAKVLAERFKSVLGSIIHEDQSCAVPGRQIHGA
LLQLRDALQLERDRGQKVAVLNLDLEKAYDRVSHRFLFETLKRMGVPPTFTGWIRTLYTDVSSEVLVNGFLSARIAIESG
VRQGCPLSPILFICAIEPLAQRIRQDPGMHGVQIPGGSKEETKVLAYMDDLNILCRNKCAVERALWHTRVYEAAAGAKLN
VSKSTCLAVGELGDLESLGVSVPREGVKILGVEFDPELSGRRAWEKEAKVKQRLGLWHARHLSMGGRVALMKAVLLPVLL
YTALVFPPPKRITHRIQRAMCVFFWGSRMEKVARKTLYKKKRAGGRGMPDIHLFLRARYTSQICKLATGPETKTACLVKY
FAGHLLRRWGVYAPTNGRPWTMEHPWFYRVLNEFRSEYGLQKESPATMSNHRKIQKAVRDRLSTVELLPDDDCQAVWDRI
FHKDLRSDHRDLNWLIARLVLPVRAWRHREGRGTRPSCPRETCQGETETIDHLLWLCPYAKGVWKKVSRLLEEVTGVRLM
TREAALYGHLTKQQGSQTTRFDQFVSCVRSALWQCRNLLMYRHAELEETDCVKMFLSELQSYYRKSVGEDGEDAANSTWK
RDTWHRLFKDPPGGEVDRENEEDSDATGPGDSEKDYNRISSSGSDSDIDSNKDSE
>Tx1-7_CQ_gag#LINE/L1-Tx1 155-1504  [Culex quinquefasciatus]
MATFEEARANSLRIYFGPGKKEPLDHGIFNFMKQKMRLNPNSLLSMYKESKENCVYIKFKTEEMLTNTLLDLPESMDFEY
NKYESTKVTFSSASTVFKYVRIFNLPPEISDQEISTVMSKFGVIQRMVRERYAPETGFPIWSSVRGVHMEIKQDIPATIH
VRNFQARVYYDGLQNKCFICGSKDHVKVNCPKKSKVNXRMEQNGSLSYSAVTAQPPLWLGRGSTHKAGESGGEGQMVVLN
NFFGPAKPSLLVPXKLPEVPSAVKPIDQAGLGSSSVEQIVLPMSEPDAEMKETTTAEGVLTGGGVSSLAVPIVTDGAVKE
AQGEEEFQLVQGRKKKRKEEMRSLSADAPAKPGSGMIFIPPSNLSAAQSMETRGRSKKKEDNKERSRSRSLRDRDTEGKG
DTRGKGDVKGKGDVKGKGDTRGKGDVKGKNKLGGNGEGEGVDANLEENL
>Tx1-7_BF_gag#LINE/L1-Tx1 85-1389  [Branchiostoma floridae]
MRRDNSICVTYTAQKDKLSEQETWALLDSVGIPTSSLQTVQALNATSFDLTFRTLHDRKLYGGKLSALQYLDVRVYGSAE
TVVTATRIPDEFDDNHVRYWLSRYGQVLASRMTTYRDRPTVRNGNRQYKVILKPGANIPSSWRLADGRLAFFRYVGQQRT
CLKCYQEGHEAAQCTVIFCNKCQLIGHTSAECSNQVVCNQCGKEGHTARRCPTSYANKLLPDNKWTSGPAAEATVASAKT
PGQSEQSQVNETVSSGKSQSEQTNETDSSDSGSEESGEDDSAEEFASSDELTEKERELERELLLEATQPSPSSAERIEPN
GEQETTHPRNKKRKKRKGKAKNGRKQNNEVEEPQTPVKNVVAKKKAPHTGDPSSDAMEVDQQTSKRPAPSDEEVSPKRKS
EPSTVTKGPHSPGYDLPLSGELAIDEFTSSGESL
>Tx1-9_AMi_pol#LINE/L1-Tx1 3603-7526[Crocodylidae]
MRSFKIATLNVHGCRKGLRRCRVLSFLQEGGYPMVFLQETLTTPADEPNWRLEWGGRVFFSHLSATSSGVATLFSPGLQP
EVLQDVEVVPGRLLHLRVQVRGLVLNLLNVYAPAKDPELADFFRQAATYIGTLNPRECLVLGGDFNVTLDARDRSGKERN
QAAVGVLGEILMDYSLVDVWRACHPTEPPAFTYVRVGEEQACHSRLDRVYISLPHFARAHSSGIRPTPFSDHHLVWAQAT
LGPGRPGSAYWHFNASLLEDVGFREAFREFWLAWREQRAAFPSARRWWDVGKVRIRLFCRGYTRGHTRQREAVREQLERE
VLELERRLATDPTNPSLCGECRERREELRALDDHRARGAFVRSRVQLLREMDRGSRFFYALERRRGAKKYITCLLAGDGT
PLTDPGEMRQRARAFYEELFSLDPTDAEACQTLWEGLPQVSVGDRDRLEAPLTLAEFSAALRLMPGNKAPGIDGLTSEFY
RAFWDVLGPDLAAVWAESEGSGELPLSCRRAVLTLLPKKGDPRDLRNWRPVSLLCTDYKVVAKAISLRLRSVLTDVIHPD
QTYTVPGRSIFDNLYLVRDLLELARREGLSFALLSLDQEKAFDRVDHGYLTGTLRAFGFGPRFVRALQVLYASAECLVKL
NWTLTEPIPFRRGVRQGCPLSGQLYALALEPFLVLLRKRVAGLMLREPAVQLVLSAYADDVLLMVQDSGDLARVEACQAL
YSAASSARVNWVKSFGLAVGDGWQVGSLPPALRGIRWGAGSLLYLGVYLSPTDPSPPENWHQLEARVVERLRAWAGLLRC
LSLRGRVLVLNQLVLSMLWHRLHTLPVPPEVLAGLQRWALEFFWPGRHWVAAEVLSLPLREGGQGLVCLRSQVLAFRLQA
LQRLLYGVGSHAAWGHLGRAFLRHFRGLRYDWQLLSLRGFSLQDLRGLPDFYQDLLRAWRLVSASRSPATVAQGANLLVE
PLLWNPQLEVPTAEAPRLRQRLILAGVTRIGDLLDYDRREWVDPXALARRMGLPTTRATCRLVQEVKSALPPDALAFVDQ
VLRGGGPPPPPVSSSPPEFVVGPAPRPASRRSPLHHLSRLEDTRPVRFSTVHRRHLYTLVRRTVHHAALASRPDTKWRDL
LGEGVAGAPQWLSLYSTLIPRATGDLSWRLLHGAVATGVYVASFTDTPVSCPFCGQRETLAHMTLECARLQPLHLHLQSL
LLRFWLNFTPHLFVFGHPIRGPTKSRDLLVNLLLALAKWALYLTRKEALAGKVPGDCGAAFLSLVRARLRAEHQWAASTG
SLDAFEDRWVRPGGLCSVSPSGALIFTF
>Tx1-12_CQ_gag#LINE/L1-Tx1 13-1191  [Culex quinquefasciatus]
MEPKRESTIKLRFGAGSRGPNNAEVFKFFGKQEWTXEELSAMYRDDYSIFVKFKTEQQMREALSKLGPQTRFEYDDGTSM
MVPVTAAAGSFKYVRIFGLPPEVDDRFIATAMSKYGTVQQMIRERFPVETGFPIHNGVRGIHMELVSEIPAQLTIQHVKA
RIYYDGLQNKCFGCGALDHLKAACPNRKDVNKRLTPAQKPGTGSFASVVANGTSGKAEELPPXSGMVLLGKXGAAPPTAP
AESVQPSEPTPSGPPXSGPSDQPQLPADPVMPPVPIAPQEPTPPKPADIAEEKQDQPMEEDGEREQSESDGEPMEKDGEW
IEKXGKGGKGKGKRGRPKGRPGSDSSEVDTNGRKKFIVPGQXHDLLDAQGDRTRSRSRSAAKPAGGDLQXXK
>Tx1-9_CQ_pol#LINE/L1-Tx1 1480-4747 via tfasty with IseAg1_pol, 1 frameshift. [Culex quinquefasciatus]
MNYPYSIATINLNSTNTTVNKGLLKDFVYNHDIDIIFLQEVSYEDFSFIFTHNALVNISLDRKGTAILIRKTFDYSDCIY
DPSGRVISVIVNNVNFVNIYAHSGSNMKKERDNLFTEALTVHLNKPNSASTLIGGDFNCILDAADTKGPYKNFSCGLKSL
IDLFAYKDIAKLRKENQFTFYRGDSASRLDRFYAPSSLVENVVACSTLPLAFSDHHSVVIKIKYLNGNLLTKGRGYWKVN
PSLLSMNNITEKFKQEYENLKQRNVYNYNFNRWWNQHLKNKVKQFYKNESYNLNLTVRNSKSALLSSLNNLSKRLVEGED
VADEMSIVKSKLMNLEQNRLKNLGEKMPSSTIAEGEKMTVYQLSNSIHRGSSFGLRLKDISNGNIVTESTKIGPMVHSYF
SEQYNNVSDLVDQDEADVILQNVTKNLTIEEKQSLEEYISVEEIAATLKLCNRKKSPGPDGLTYEFYLTHFEILKFDICK
LFNAYLSGELIPPKEFSEGIITLIPKKGDTTLLQNQRPISLLNTDYKLFTKIIANRIQSKIGNLIDIGQSACIAGRSCTD
NLNDVRRILTKSIESKSFKGFLLSLDLEKAFDKVSHNFLWIVLKRFGFSDKLISCLKCLYGKASSKILFNGFLTEEIRIR
CSVRQGCPLSMILFVLYIEPLIRNIDQAILGVLTFNKFLRVIAFADDLNVFLRNNEEFDIVLNIIDSFSQCSKIKLNKDK
SCFWRINKCTGGPFMVKETENLNLLGVTFKSNWSNTIDYNYEKLINGIKYRINLNNFRTMDLIQKVWYLNTFILSKLWYL
SQVLPPKNKHIASIRKISGMFLWKGCIFRVDKRQLYLDMDRGGLGFIDPEAKCKALFIKNILKETDDNSQDEKYLLNFNH
LQRLTRNGREWVEESNRLINDNIQIKCTKQLYRTFIDQYKFTPRIETEFPLINWNILWNLMNKPYLLSHDKSKLYLLFND
LVPNKRKLLHYNIGRVENEICEVCGEIDTNLHRVRSCLAGKEIRDWVFGIFRKRFAVSAKQIDDLFFWRIDTESFPQRAA
MWLAVHFVAYCVDKFPRFNLFIFQRSIREFRWNSKGLVKKYFEDYLNIC
>CR1-2_TCa_pol#LINE/L2 183-2099 Fragment [Tribolium castaneum] [Tribolium castaneum]
CLSTTRKQYPTEQNKELYTEYKNKHLLLLNSTKKSFYENKISVSDNRIKTIWSIIKSETKSVTNQLKLPTNVSADNFNDF
FLHNPENIIKNLTNGHNDSHTYLNKKYIKTNASMFFQPVIEDDIRIIINKLKNKTAEDIYGISIHLLKVSATPILSIITN
IINCCLSEGVFPSKLKISRVLPIYKKGDENDLKNYRQISILPAFSKILESVMCQQLVNFLEKNKYLSQQQFGFRKGFTTT
DAILSLVKDIQKAFENKQTYVGVFTDLSSAFDCVDHEILLDKLRFYGVRGTCLKLFRSYLEDRQQYVKINASLSKAGHIK
YGVPQGSILGPVLFLVYINDLENSMDKNILTIMYADDTSLGIPINKKKNVVPIKERMIRDADEWFAANKLALNKTKTVTK
VFELQSQLKQTEHIKFLGLFLDNKLSWAPHVYEVCNRLSTAVFAIRKIRVSVNEYAALSTYYALFHSQINYSILLWGDAA
YVHLHKILVLQKAAVRAIAEICSDVSCRAYFKKYKIMTLFSLIIFHKVYDVRKNISSYPSLADVHSHDTRNKTNLVNPRF
RLAKSDNLSIRLYNSLSQNLKDQHLPLKTFKTKLINMLTECSLYSINEYLCVCVCVCYHYIFILLTSLILILLLLLLL
>CR1-19_SP_pol#LINE/L2 295-3291 [Strongylocentrotus purpuratus]
MPESTVNSIINVHSFVEFLSPRNGENDFYGPSHGSYTCNEFNDLVNDSNDGLFSILHINCRSLSKNYDNISTFLSSLTVQ
FTAIALTEIWIKEYNSYYDIHNYTLVLKGRQNKKGGGIGFYVRNDVKFNRRLDLDINTPYIESLFIEVVTANKSAILGVV
YRPPDQPIQSFLESVENVITTVNTENRIFYMIGDYNINLFKVNCQSHVKDFIEMFMAVGMYPLVHGPTRVVNNSISLIDN
IFTNNLENCSSGTILTDISDHFPIFCIYSQSTQTVTETCITMKRQFSAKNINTFITNIGNTHWILKENDANSSYDCFLKQ
FQHVYEICFPMKCQSKKKKRFDKPWFNDELRQLNKKKSLYYKKYLNNRTAYRLAAYKKCRNKLTNRIKYVKYKYFKQSFV
DAKGDTKQTWKIINGLLGTKSKKNEIPSTLQYNNETIDYDTDICESFNEYIINIGPKLTSTLDIPTGDFKQYLNKMNLLL
FFYFFFTPVTPREIINIVDKLKSNKCSGFDSVDVKMVKRVIHLICYPLCAIFNSSLETGIVPDQLKIAQIIPIFKSGTKT
EMSNYRPISLLPVFSKILERAVYNRLYSFLNLHNILNNSQFGFRTGHSTSSALADFTCQVSQVFDKSEVMMGLFLDLSKG
FDTLDHNIILAKLFNYGIRGVLLNWFKNYLSNRKQFVKIKVNTSSIQTVVCGVPQGSILGPLLFILSINDMCNISDKLKY
ILFADDTSVFMSHKNIQSLQQDFGNEINKLLHWLSLNKLILNVNKTNYMVFTKQQKIDFNEVDLQVNNHEFQRVSVNKFL
GIEIDSKLTWNEHTGAVCNKISKNTGILNKLRFLPKCVLRILYNTLILPHLYYCSEVWAMTSQTNLNRILKMQKKAIRVI
SNSHYRAHSKPIFYKLKLLNVFDICEYHIAVFMYLCRNESLPCALLKYFNLNSTFHDYETRNASNFHLPQIKTTLMKKSI
SFDGPKIWNSIPINIRNCKSLQTFKRKYKMYLIESYVL
>CR1-18_DR_pol#LINE/L2 337-3197 via tfasty with CR1-15_SP_pol, 3 frameshifts and 5 stopcodons [Danio rerio]
YRLLHFCSLLLTNVIIINNMYLTVCxCLFLKKYVIHSFVIESIALFVVVKKYMLLSNDALKxADRIYSVILIKxCILIYI
SENLKCLQIETHVNMECLALNVILSPNMKFYIIVLYNPPGHDASFFNRIEGLLSLVDDRCECMMFGDFNINWMDKNSKSQ
LKSNMEKLNFTQLIDRPTRITRKSETLIDLIFTNRPERVTKTDNLITGLSDHNLTLIVRKLTRKRLLHHNxMENQMLITG
FAKSKIAHFEYDLKEVNWGKVFKELDINQSVGHFATILSKLTSKYTKTWKSRYKKFSLPWFNSDIRSVNxKARSCSQKSL
LSKTNTDHLVYTGLRNKVVSELRKAKMKYFSKLIEEAHGSSSKLWQHINRLSNSNRQKHSKIKHLKVTNNMICSDEAMAN
AFNSFFIESVQELSSNFNFTKSYPEEPDYVYPDSFYIKEVSCEKVQKVIENMSNSTAKDIFNFHSELIKRYKHFLLEPIT
YLVNLSIQTKTFPDSWKTAIVIPIYKSGDKDVACNYRPIAILPVVSKVLEKIVAEQLMEHLHSKQLLYPQQYGFREKYST
ETANCYLLEKIKGSLDKGSVVGAVFLDLKKAFDTVNHSILLNKLREFKMSSEALQWFGSYLGGRQQCVRVNGVKSSVRST
TIGVPQGSVLGPLLFTMYINDLPECCPGVNCQLYADDTVIYVSAKTPCRAGEQLTQALQHISRWLELSHLTLNVKKTVSM
CFSIRNRPVQDTFEVLIKNKVIKEVNEFKYLGITLDINLKFDSHVKNLSKKVKPSLNCFRFIRRFLTYHTAKLYMHTMIF
SHLTYCITSWSQASLTTLKPIDSIYKQAVKIMDLKPMRWHHCDVLCKHNLFNFDSFIQFSYLKLVFKCLNNHVPILFSKL
INRHQTSHRVTRATANGDCLVPKCKTSFGQSVFSVKGAKLWNELPVSLKSESNLNIFSSALKKWLKTKQQCLHK
>CR1-23_SP_pol#LINE/L2 792-3686 No obvious gag yet. [Strongylocentrotus purpuratus]
MIPELCSTGLKICHININSLPHKMDELKILLGNDPFDIVAISETHCDSTITDLDISLDNFCVTRKDRSRHGGGIALYVKN
NISYEVISQLDNELEVIFVKVKQKQTHPLYLGVVYRPPNSPNEFFDKLSEIIHSISENAGEIIIIGDFNCDLLPEICTPF
SRALLSLMDTNLLHQLISVPTRVTPHTKSLIDHVFSSIPEEHQHTGVVKTHISDHYLIFTVFGYARAKQKNDDNIIEYRC
FRHFSNDNFVTMLQNLPFNEILNDKDPNHAWQCWVDLLISAVNKHAPVKSKRIRSKLCPWITGDLIEAMNRRDWLYTMAT
KPSNPDSSEFWSEYKSLRNEITCMIRNAKNDYINALLHENGGTPNAMWKTLKLISSSKKESNLKLEVDGEEVIDAEKIAN
HFNNYFVDAVDTMFNPLNFENDVNNSTIDRASEPSVHSDTVDTVPPVNSFDLPVITDEFVMKEIERIPIKKATGPDDVSI
KLLKFACNSQNVIQSLTYILNSSLDQGIFFDEWKIARVQPIYKAGSKLSVENYRPVSLLSIPSKILEKAVNTEFQEYLKV
NKILTERQFGFRPNHSCETALLCMVDLWAQNVDKGNLNGVAYIDMRKAFDAVNHSTLLMKLKNVGCTDRAIKWFRSYLGG
RSQFVSIKGKKSSTRTINYGVPQGSVLAPLLFSIFINDLPTSIHSADMFLFADDATMSVQGKTLSEIQTKLNLALDEVYS
WTQKNKLLLNTTKTKVMVIGSKQKLQTLNENNLNVRIKTTPIECVTQYKCLGVIVDSNLLFSKHVEKVALQMKQKLGILR
RLKGTFNKHYLSMIYWGYILPHAMYCCTVWTNRSLHNYETINKLHKRAAYIISGCSWSTPSHEVLLQLNWSTLEALYSRA
MGIMAFKCVHHLAPALLANKFILHDDVAQRMTRNSHQLKLESNRCNTEFFKRSFVNSAITLWNNLPIETRFSPNLNVFKS
NLSH
>CR1-36_DR_pol#LINE/L2 87-1628 Fragment via tfasty with CR1-1_DR_pol, 2 frameshifts [Danio rerio]
LQKLLSLNSPSCDLDPFPTSVLKNCLTVFGAHITTIVNASLSTGFIETALKTAAVTPILKKPGSDSSDLTNYQPIFNLPF
LAKVLERVVVGQLQEHLQANALFDAFQSGFRSGHSTETALVKVVNDLLLIADSGACGILVLLDLTAAFDTISHSILLDRL
HNWVGVDGIVLNWFKSYLSGRSQFIYVGGSQIAYCPLCHGVPQGSVLGPLLFSIYMLPLGQILQKFGIRYHCYADDTQIY
INTSPNSSASMSSLNACLTEIKAWMQHNYLKLNSSKTEILLVGTPSNIKRCSEFELTVDGSVLSPSPQVRNLGVLLDSQL
SLKPHFKHVTKTAFYHLRNIARLRPFLSRPDAERLVHAFITSRLDFCNSLFGGLPANSLCKILQYIQNSAARVLTHTSSR
SHITPVLQQLHWLPVKSRIDFKTLILTYKAVHGSAPGYICDLISISSASRCLRSASGPTLFQPRCKLSTMGGRAFSFRAP
KLWNALPTNIRNAGSLDGFKKLLKTHLFRTVFNL
>CR1-32_HM_pol#LINE/L2 859-3997 via tfasty with CR1-14_HM_pol, 3 frameshifts.  [Hydra magnipapillata]
MNYLYIHILYYLLIFNMDSNNSNDFEKIFNFFQTNVLNFNEKSDPDLNYFNEINTSEFECKYFYPNEVKYFLKIDNINSY
LNVVHINIRSLKKNFENFLNVICETDNSFNLICVTETWSSNEDFENNSNLQLPGFNAITLERNINKRGGGVLFYVRNSLL
YNVRRDMSVSDENKEILTIEIINKKSKNLLISCCYRPPTGRTEDLSNFLQKKILEKTNLENKKNYLIGDFNLDCFDYYEN
QNTRKFYNNLFETGTIPIINRPTRITNYSSTLIDNILTTDFFNISLKKGIIKTDVSDHFPIFFSVNLDFKKEMQKSVTIK
KRLFNNINLNSFKEHLLLINWEHLNFNNNINTIYNTFFKTFYKVYDTNFPMCETVVKTKDISCPWITKGLKKSSKIKQKL
YIKYLKSKSVKHKNNYITYKNLYEKLRKNAKKIKYYSYLINKHKNNSKQIWKIMKEITGKLKTNTNSLPHEIKIDNKLIN
DSNYIAAEFNKFFTTIGTKLANSIPYTDDKSAEFQTSTSSSFHFTELTYDEFEIAFSSLKRNKTTGYDDINVNIIIDFCD
VIKHIIFKIFRASISQGMFPDCLKIAKVFPVFKTGDHTNINNYRPISVLSVFSKILEKIMFNRIYDHLINNKILYENQFG
FKKNNSTEHAILQLTRDISESFKKSHFTLGVFIDLSKAFDTVNHQILIKKLLSYGIKDNTLNWLKSYLTNRKQYVYNKES
SSQVLMNVTCGVPQGSILGPLLFIIYLNDLHKTSSLTKIIFADDTNLFLSHENINILFNNMTNELKKVSDWFKINRLSLN
TAKTKWTLFYPLYKKHRIPHLLPELYIDNVMIKREKVTKFLGIYIDENLTWKHHINIISSRVSKCIGILYKARNILNKRQ
LTQLYYSFVHCHINYANIIWGSTQKTKLKTLFNHQKHAARAINFKNRLTHSAPLLKDMKALNVYQLNIFNILCFMFKCKE
NLSPQVFQYLYSLKPKNKYNLRIDNNLNAPFCKTKYDEFCMSYRGPLLWNKIVLPNFDFSIKLNYSSFKTKIKEIIFSIE
NIFIYF
>CR1-17_SP_pol#LINE/L2 110-3124 [Strongylocentrotus purpuratus]
MSCRARFVQCLNEKHVSVSTLREFLSPSDPQSTNNFTQSHYTPDEFNTFVSQKLLDKDVNNKLSFININCRSLQHNFDAL
SVLMMSLRMQVSIIGVSETWLRDENSQYSLCNFDHYEFVGNNKRLGRGGGVGIFIRKDINFKRRTDLDINESFLESIFIE
IEHFNSNILICVMYRPPSQPVDDFLMSLVNVFNVVNVEKKLFYLMGDFNIDLLNVGKVQSVNDFLNILMLHSMIPLINEP
TRVTDRSSSLLDNIFTNDSCHIYSGILLTDISDHFPVYCICDTDIPKSSCETDFYKRDLNENNIRMYFLQLRYSTEWYLS
SDVNSSYNTFVFKFTKLYNLCFPVKLVRIKYKRKNKPWITNEIIKLSKIKCRLYKLLIKNPNVYRKEVYRKIRIKLNNKI
KIEKKNYFKKSFKDSTGNMKKTWDIINKAMGKKCKMTNIKEINKNDTVITDKNDISNNFNEYFVDVGYNLNCKFDCFDDS
ECIKCIDMNDKSMFFKLVTSSEIEDIVKKLKNNTSAGYDDVDVKIVKRCIYLLSNHLCTIFNQCLEQGVFPDKMKIAKVI
PVFKNGVSETMSNYRPISVLTVFSKNLEKCMYNRLYAFLTKCNIINNNQYGFRAGHSTSCAIIDFIHKVASAIDNNEVML
GLFLDLSKAFDTLDHHILLVKLYQYGIRGIGLDLFKSYLLHRHQFVSIANVKSNYQEIKCGVPQGSILGPLLFILYINDL
PSVSRILKSILFADDTSIFLSHQNIQSLQDIFNREIKLINTWFSVNKLSINISKTHYMIFTNKKCDTDSIIIRLCNTEIK
QVSSLKFLGITIDNKLKWTDHVNAVCNVLSKNIGVMYKLKSFPKCILKMIYNSLILPFLYYGILAWGNAHETHIRKVILL
QKRAIRTICHTSYLAHSHPLFKEMKILNFTDMYNYQCAIFMFQCYLQILPKSLLKLFILNCNIHHYSTRNAENFHLPLVH
TTSYKRTVIFNGPCLWSTIPRKIRELKFVNTFKRKYKKYLMDVY
>CR1-5_HM_pol#LINE/L2 140-3205   [Hydra magnipapillata]
MENNLSYNINAKNIVFSDNNSDNHTETLLQSEYYSIPESTQYLCENKNKFSILHINIRSMNKNFENFKCLLGELNHDFKI
ICFTETWLKSNETNSNFELRNYTSVHQMRDICVGGGISIYVHNSIDFIQRKDLNVNNTDCEALCVEIINKLAKNFIINAI
YRTPAGSLKTFKTYLRTFLTTKNILQKHVYVVGDINIDLLNHALNSEAKTFIDILLEYNLIPTINKATRVTKKSSTLLDN
VITNNFHNSRFKTGIIKTDLTDHFPIFFITESVTLNNATHKSTVFMRQINESSICQFKNLLNNYVDWNLVLQSHDVNNAY
DLFLNQFSKMYDKAFPLKVKLINSKSVXSPWMTKGLLKSSRKKQKLYDKYLKNKTYKNETNYKNYKNLFEKTKKQSKVNY
YAKLLEKNKGNPQKTWSVIRDLIGKNKIEKNNLPQKLIIEGKMIYHKEVIIEKLNNFFLDVGPNLAAKIPIGQKKFDSYL
ATTDLIMEEPILTKSELHTAFNSLKKNKSAGIDQINVNVIKSVFDIIEPSLFHIFNLSLKSGHIPDKLKIAKITPIFKSG
DETNISNYRPISVLPCFSKLIERIMYNRLYKYLSENKILYNNQYGFKKNHSTDHAIXELVKHISNGFNSDCYTIGVFIDL
SKAFDTVNHEILLKKLENYGVKNQSLLWFKSYLTNRKQFILKESKDSKNNLITCGVPQGSILGPLLFLLYINDLYLSSKV
LNTILFADDTNLFYSHKDITVLFKIFNEELDKINEWFISNRLSLNVEKTKFILFHKPSKAENIPLKLPNLLINNKIIKRE
STTNFLGVLLDEKLSWKFHIKYIEGKISKNIAMLYRTKPFLNNESLKNLYFSFIHSYLSYCNISWGSTNHAKLKKIYSKQ
KHACRIVFGANRKTQCEPLLRQLGALNIYKLNIHQVMIFMFKAKLGFSPVTFQSYFNEISHKYPTKFSVNNFVVPINFLK
LSSYQIQYRGPLVWKEFLPIFSKKQNFVLNCTLQSFKDDSKRHLLNMEFDILDFKYLF
>CR1-3_IS#LINE/L2 1-2844 [Ixodes scapularis]
SIDCLVISETNIKDCDEALFQNKSFETITNNRKNKRGGGIMVMVNKKWNIKNSKKITFSRAEAVQIDIENEKEQIQILAV
YRAPQGNIAEFIDDIGNWIKVENSKNLIITGDINIDITKQNNLVDKYPNCLAEHGLQSMIKDITREEILGLQLARSCIDH
ICIRSKKYCKAHVIAEKLADHYFVGIAIPELGIPESERNQVTTYINNAKVDKYVREINWESIANEEDPEIIYNKIKNAFT
DIYKKSSEQVTVKKRKTGNQWVTKEIDQLIRKKNKAWRLLKSSPGSSQRKEEYRSIRNKVTSIIKKEKRNYFRKKFEDTK
DLSQCWSVINQVLGRNTRLSIDQTIKNNFGTYCNDEKIANDFNNEFIQSIELLCNHGYQNETETRARIGNSMYLPEMTEE
DLVEIVSNMKTNKAVGTDSIRPRDVKENVNIIKTVLLALYNKSLAIGKVPSGLKTAVVRPIYKKGDKKTLLNYRPVCILP
VLNYIMEKYVYEALNGFINKYNLLTKTQYGFKTNSSTITLLEDFSDFVNKKLDEGNYVLALFIDFSRAFETERHETLIDR
LFSLGVRGKLLDWFKDYLSGRTQVVKIASSFSEKRLVKQGVPQGTVLGPILFNIYINDIVNVHLNSVLFQFADDTVILYA
DNDYTTAENKIQEDVSKLVKWYKENQIIINTKKTELMCFRSPQRRTQMEGNIKIHSDSCKNCNCEPLKLTTSVKYLGLYI
DEHLKWNQHVEHICKRLRSVAAQLYHLRSCLPQPILKMIYHSLGKSVLVYGITIYGHCAKYLQYKINSILNRVVKNLYVD
EHRPLHYMYQHLDIQKLSDLLELNIIIQHQFSDKYKTKYIPIRNLRPKNLFQEPKVKTKYGKAVRASYVPRVFNKLPPRI
IEITKISELKRELKQWFINRKEQQLAEEKSTRGWNLNSVVLCVLFCRELWSKGVYMSCFHFFCLFARN
>CR1-6_DR_pol#LINE/L2 1-2161 via tfasty with CR1-1_DR_pol, 1 frameshift and 1 stopcodon. [Danio rerio]
LTQPVSFSRVFHENSALEFSNSYTNFLSNANASLPSCSDTEQLAETFNSACDFALNEVAPLKSKRSRVSSIPQPWLNSST
RTLRQECRRAERRWKKDGLQVSYQILKDCLNSYQDSVSEAKSKYFSNLIAKSASKPKVLFKTINSVLNPTMCSVPVVNLE
TCIKFSDFFAQKIQDIKSHLFPTDIDHSDSVPPSNSFTNFQPVSSSQLLNTISQMKLTFCPSDVLPCRLFKEVLDTICPS
LLALINSSLINGVFPDVFKHAVVQPLLKRPNLDPAVPDHYRPISKLSFISKVLEKIVLSQLTSYLDIFNILDPFQSGFRA
KHSTESALLKVTNDILLSMDSGSSAILILLDLSAAFDTVDHNILLRRLECVVGVQGLALQWFSSYLKGRSFSVNIGSFTS
PPKPIHCGVPQGSILGPLLFSLYMLPLSSILLKHNISYHCYADDLQLYFPIKLGKDLSLENLFLCLTDIKTWMTNNSLQL
NENKTEVLILGPAATNNSIKTQLGALNDNLHNHAKNLGVIFDPLLQFDKHVNAVVKSSFFQLRLVAKVKRFLSKKDLEIV
THALISSRLDYCNSLYIGLPQSTLSRLQLVQNAAARLITGTKKRDHISPVLASLHWLPIKYRVDFKILLFTYKALHNSAP
AYVSELIRPYTACRFLRSHDQFLLSVPRSRCKSKGDRAFSVAAPRLWNSLPLNIRISPSLDAFKSNLKTHFYSLAFDxCM
>CR1-16_DR_gag#LINE/L2 16-808 via tfasty with CR1-1_DR_gag, 1 frameshift. [Danio rerio]
MAAAAAWRNDRADFSSIDQKDFEVRSIEEELSVLEIQIKGLLEKHTELCERKTLLETSRAADIRPTQQQWTPFTSTPGIP
TQESTSAEDSQACFTPAPTYNGPWLYQRRKSRSKARTSAALSPLTQKFHLSAALTQKLDFPTSNRFEPLTSQTDMLLPPA
SSGKTLIIGDSIIRHLNIKSNSTEVQNKCFPGARVLDIAVQIPTILNHAKENDTVILHVGANNIRLRQSEILKKDFNELV
ETVRNTSPAIRILISGPLPTYRRG
>CR1-15_SP_pol#LINE/L2 286-3287 via tfasty with CR1-18_SP_pol, 4 frameshifts and 2 stopcodons. [Strongylocentrotus purpuratus]
MPDRINYQHFLNNIDINAIFEKxSPIINNQESYRYPQSFYTPTYFNQMLNVHNVDKYLENYSSCLHVNCRSIKKKFSCLE
SFLHVIDNPFCAIGITETWLRNSDPKYNLDGFKFMGNNRVERRGGGVGIYVRDDLVYKQRVDLETNVNCMESIFIEIQNS
NKYIIIGVVYRPPGESENDFFQSINSFLNIVNKENKYVYLIGDYNIYLLTVNSCSKTNEFLDVYMTKSMYPVIHYPTRIT
DHSISLIDNSFTNNIDDVLSGIILADISDHFPVFCISNSQITLKKSQTTMKRDINEISIRKCINLLNDVNWRVDNEDPNV
SYNNLLYQFMQLYNKCFPLRSIKFKKKRRDKSWFTNKLRKMCNKKYKLYKKSLQNPTDYRKSVYKMYRNKLNREIKHVKY
EYFKNKFQNVQCDMKETWKLINKAIGNSFKTRDTNIEHIQVNNERITDDLCIAQEFNNYFVNIGASLRNNVQNTLIGNNN
HMQYLESNNVTAFFKPITTKEIIDIVCDLKSKSSTGYDEIDIVIVKRVVHIICYPLCRIFNESMNQGIFPEKLKIAKVIP
VYKNGSFDTMSNYRPISVLPVFSKILEKCFYNRLIYLLNQCNLLSDSQYGFRAGHSTSSALIDFVFKVSNALDNKQIMLG
IFLDLSKAFDTLDHTIFLDKLFNYGIRGVLLKWFESYLTNRKQYVLFNNIESDFKTIGCGVPQGSILGPLLFLVYMNDIT
QASQILQCILYADDSSLFLSDNDLDRLVIRFNDELQNISQWLYINKLILNVKKTNYIIFTNKNIRTDDIEVKINGNVVQR
CNSLTFLGIQIDYKMSWHVHIEAICNKLSKVVGILHKLKHFPYKILLMIYNALFLSQLNYCNIVWANSNDYCMNRLYKLQ
KKAIRIISGSHYLAHTKPIFVRFKCFNVFELNDYNIVIFMFLCHKGIIPPSLSNKFILNSEIHSYITRQSSHFHIPLIKT
SVSKNSIFFKGPILWNELPPNVKASPTLNTFKKRYKQLRFCE
>L1-36_XT_gag#LINE/L1 422-1078  [Xenopus (silurana) tropicalis]
MDEFAEAHNSLADTQGKLEKEVERLANKVADLEDRSRCNNIKMRGIPESVHTQELETYLTELLTTIMPNMPPIEQTIDRI
HRVPKPRNAPEAAPRDVLTKLHFFRTKEKLLQAARLKENWPPKYVDLQIYPDLSQATLSKRRSFQEVTKVLRDNKIPYRW
GFPIKLIITKQGIPMAFTSPEEVKKALHRWNLPQAPGSPANPTPQKSPRKLTKDWATAK
>Jockey-3_DEu_gag#LINE/Jockey 510-2171  [Drosophila eugracilis]
MSRLSDSEDELNIRKTVARHQQTMKEALNNFSRIYASTSSAKPLPSFDEREPELSAINGDDEDWWTPRSTNNKRRLESRS
PNKVSKVQRNSNSPKTILPANRFSELSDIDTDIEVAGSHRPTRPIETPSTSAGLRQAANKTSSSSSTNNNNSKNPSGCQE
QPASHKPPPIVVNHCENLNGLIRSIDKIVDPCKYSLKCHPNNSVSILAVDSDAYRAITKSLTAKKVPFHSWQLKEERSYR
VVIRGIHHSVPDDNIKESLTSAGHTVRFVNRPRSRFDKTQFVNLVFVELEPAANNKEIHEVKTLCRQRVQVELPYKKDDV
VQCHRCQAFGHTKNHCQKLHNCVRCGLQHGLEACLKDVHPVKCVNCGGNHTASYKGCIVYQQIASRRKISTSRRTTTLQQ
QPTSIPRTNPVFPSSYANAVRGQTSYPTPTQSQQQFPPLGSNSRKQSPTLHHNAPPRQERPVPQLQQQQVHPQQSLPQQQ
RRTTQQSVNDIQWQRQEQMFLQSNERLSVLVAQFDKMFQMMVSMMGLVSKLLPQHPLGGAEAFAGSLPVHVTQP
>Jockey-3_DEl_pol#LINE/Jockey 1784-4495 via tfasty with Jockey-2_DT_pol, 2 frameshifts. [Drosophila elegans]
MTNYGLNIVIWNANGLVGKSLEVEHLLQERDIDILLISETHFTSRSFFRIYGYAVYSANHPDDRHRGGAAVIVKSSLDYH
LSATISEPHLQAVAINLVTGLAEFRSVLSTVLWSPSFWSAHEYLRLFGSVGNRFLIGGDWNAHHSFWGCRRSCTRGMSVV
SNSSMQILATGGPTHFPWINNHLPTAIDFAVYRGIPCSHLAISECPGLSSDHIPLLIYLCVAAYTVVTKTRLLPRGSDMR
SFGARLSALTQEHPSLTTVDEVDSFAEFLVDQIHQAAPPARSVPIPPPSWSASKPEIAALARKGHALRRVWMRTRHTIDM
ARWKAAVSELKKVLRLAKSEFFMDKLSAIDPNQNHGFALWKCTRNLKRQPLQRFSLKRNDGTWAHSDSEIAEVFADDLEN
RFTPFDFATSQEVQTTISRLGLSFGPPVDVRPVDEGEVRDHIRRLVSTKAPGMDAIDGKVAKALPSSVITQLCQLFNASL
DLGHFPAPWKRALVTMVPKKGKDPCSPDSYRPISLLSTFSKIFERIMLARLLAIAAFDEALPDHQFGFRSRHCAVEQVHR
VVNHVLGALEDRKYCSAVFLDVRQAFDRVWHEGLLYKLMPLLPEGLWKLIVSFLDKREFAVDIRGHRSGLRPIRAGVPQG
SVLGPVLYTVYTSDLPNPVARGTLLATYADDTAFLAVGSTRTSASRRVQTFLNEFECWASRWNIALNVDKTQHATFALRP
GRSRSLYLDGNRLKHEDKVTYLGVTLDRRLCWKGQIDRVCGSARSKLDRMDWLLRPGSGLTLQAKLRLFKAIVLPTLNWG
ITCWGTACDSSLKRVQTCISKALRRILGVKWHHYVENRVLFQDTGVPTVTETICSFSNRYRDRLLDHTNRLARRLATPLG
RRRLRRRHPADLWIIGRDRHGRLL
>Jockey-4_CQ_pol#LINE/Jockey 1199-3847  [Culex quinquefasciatus]
MDNYTPTRILIWNSCSIGRKTLELSDFLRSNNIEVAAISETHLKPGDKVWVPDYVPVTLERTRCKKGGVAVLVHHLVHFR
VLPSLQTKFIEAVGVEVDTSTGPVAVVAVYCPKQCRIVDGSLADYKNDLLKLTRRFPRFIIAGDLNARHSLWGNPSNNRN
GNVLAEDLQAGHYVVLHPESPTFFSHAGVGSTLDIALTNLSEFCTPLQALTELSSDHLPVIFNLEARVNERQRLRRHNYH
RANWIRFKQFVDDRVEENPVLDSKEAIDRALLVLEDSLNEAKDLFIPTAEVSSKFVNIDPETKRIMSLRNAVRRQYQRTG
NPGRKALFKKLNKIVSVRVEKFRNRQFSKHLKSIPPYSKPFWRLTKILKTKPKPIPPLKSDDLAVTPVEKANLIAGHFLT
SHNLGRDIVSPMEGPVLESIHQLAHTPWVLPDDQKITLEELSGWLKGLKNMKAPGFDGIFNIVLKHLGEKARTLLVAIFN
RCLELGYFPTAWKRAKVVPILKPGKDPSSPTSYRPISLLSSLSKLFEKLIYRRLLAHVEENNILLDEQFGFRRGHSTVHQ
LQRVTKMIHRAKSVSKTTVMALMDIEKAFDNVWHDGLVHKLMQFNVPTYLVQVISDYLDRRTAQVNIGSSVSDPYDCPAG
VPQGSILGPLLYNLDTSDIPPLPGGGTLSLFADDSAISYEGRNIRHLVTKLQNGLDVYTRYLSDWKICVNAAKTQAIVFP
HRNTDRLKPTTKLKVLGTEVDWSQVVRYLGLLIDSKLLFRYHLDDRIIKGIAMLKKLYPIINRRSKASLKNKLAVYKMVV
APMLLYGSPVWQGCAMTHRKKLQVIQNKFLRLILNQPWRTRSSDLHRLASIEPVDARLASLAEKHRNRALVSEHGSIRGL
YP
>Jockey-4_DPer_gag#LINE/Jockey 663-2000  [Drosophila persimilis]
MPMVSISKKQKRADKVSKTIQKTTHPAIPKNHPFKGRQNFTPVTTPSVALLNNRYAALSEEAESVMELDEEEQHGLVANE
ASNEQQPSIVPKPPAICVPQVNKMDKLEDALNSVIPADEYDIRTSRFGVSRIYAKNSQAFRTVIDMLTKQNCEFWHHQLR
EDTPYRLIIRDIHPNVPKHLIEHTFTDKGFTVMNIYCPRKPNWRNIEINEEDDHEINSLKTRQSMFYVSLKKTPNIAEAL
KITQIGRHRVTVIKAKHSKELVQCFRCQDFGHTRNYCLKKPVCGKCSGDHYTGSKSCELSLSNKSICANCGEDHLSSYKS
CSVRIELSKKLKPTARLPEDGMPASSKNKNXPARSQVISNANVRSGFSYADITRPRAEKNINVNTLHDSSRLFNGAEDQH
FSSKFKILEKAINDLNSRMDQMFKLIQDTMEANKAFRDLVQKLISK
>Jockey-4_DK_pol#LINE/Jockey 1191-3923  [Drosophila kikkawai]
MTSSSLKIGLWNARGLMRGSEELRIFLGIHDIDIMLVTETLMRXERRIFLPGYLTYFAIHPSGNSRGGSAIIIKSSLSHS
PLPPTXSNDRQIASVLLHTSDGTVTVAAIYLPPAESWTQSSFVSMFATLGNKFIAGGDFNAKHAWWGNSRACTRGKRLQE
VIANGHYQVLATGEPTFYSYNSLLIPSALDFFVTNGFASGRLHVRTLHELSSDHVPILAELYSTPLWKPHRPRLLAHNAN
INIFKSHLEQLSDVNLEILEEVDIDNAISLFMTKLSEAAQLAAPRNRHGVVGPRPPQLPPRILALLRLKRRVRSEYARTG
DPRIQQIHRRLANRLHKVLARRKQTQIDNFLEDLGPDMSANYSLWRVTKRFKTQSSPKSAIRNQAGGWCRTSLEKAEVFA
DNLEQRFKPFDYAPDSLCLQVEEYLESPFQMCLPASAVSLEEVKVLVAKLSPKKTPGEDLLDNRTIRLLPDEALQFLVSV
FNGVLEVGYFPKVWKSASIIMVLKPGKPPSEVDSYRPISLLPSLGKIMERLVLNRLLSCEEVSSAIPKFQFGFRLQHGTP
EQLHRVVNFALEALEKKEYAVAAFLDIQQAFDRVWHPGLLYKAKRLFPPQLYMVVKSFLHDRTFHVSADGYKSRVKTIEA
GVPQGSVLGPTLYSVFASDMPSHSPVTEVAEEDLLIATYADDTAVLAKSKSILAASFGLQEYLDAYQEWAMNWNVRINAD
KCANVTFTNRAASCPGVSLNGRVIGHHRAYKYLGVTLDRKLTFGRHVANIQHAFKAKVSRMAWLLAPRNKLSLYSKVMIY
KSILAPSLFYGLQVYGIAARCHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLHTISTKYMEKLNNHPNSL
ARRLATSEHRTRVRRRLKRHHPQDLPDRVLT
>Jockey-3_DBp_pol#LINE/Jockey 1374-4073  [Drosophila bipectinata]
MHTQLDITIWNANGLVKRRPEVELYCKTHQADVLLISETHFTNRSYLTIRGYDLIAANHPNGRGRGGAAILIRSCIKYEA
LPAMCEDWVQCAQIKISTTNGDITIAAAYCPPRHNIHEQEFGLLLDCLGPKFIIGGDFNAKHPWWGSRITNPKGSALYRQ
IQSRILSCHATGAPTYWPTDPHKIPDVLDFAISGGLDSAGIQAREVEDLFSDHSAFAVSLFTPALLRSARKKLIYKTTDV
DKYQSYLNNVTDPSPTLDSPVDIDTVVEELTAHIQAAASEAAPRPSNRPRATDRDIHFWSPEVEELKLEKRRLRRVWMLS
RNPLDKTAFNRATKCLTETLARLRKQAFDGFVEQLEPGDPQHNLWRVTKSIRQPLKRIPPVQRTDGSWCRSEMDRANAFA
EHLEGVFTPFDRCSPEDAAETARLLAEPSRDADPIPPVTEEETAELITIMSNNKAPGDDGINAIALKMLPPPSIQLITRI
YNRCLEIGYFPSTWKRAQVTMIPKPGKPEANLSSYRPISLLPMLSKILERVFLSRALPVFDEAGLIPDHQFGFRRRHGTP
EQCHRVVQCILDAFETKKYCMAVMLDVKQAFDRVWHPGLLYKLKTGLPRPYFQFLKSFLEDRKFAVRCGEAISGIREAHA
GVPQGSVLGPLMYNAYTADLPVLQRPDLLAATYADDTAFLTTADSALGAADTMQLQLDLLSDWQKRWNIAVNNEKSTAST
FSLCKGNCPPVNLNGSPIPQVDNPRYLGFTLDRRLTWKPHLIKKRKQANQRLRSFYWLMGRRSKLRTSTKLLIYKAIIRP
IWTYGIQLWGTASKTNVRTMQAFENRALRIATGAHVYHDNRTIHEVLNFPWVKDEIQRSSARYMQRLHNHPNRLASSLLD
NSEQPRRLKRTHPLDLPLLL
>Jockey-1_DVi_pol#LINE/Jockey 2210-4927  [Drosophila virilis]
MSSLRIALWNANGVFSKANEITAFIELHHIDVFLLTETHFCSRITLRVPGYTLHTANHPDNSQHGGAAILIRSSLSHHSL
ESSCHWHMQAAAIRLGSSRGDFNLASVYCPPALRVTEAHFRALFDQLGPKFLAGGDWNAKHRWWGNYRMCPRGRTLFSAI
ENEGIEVIATGEATCYPYRATATPSALDFGLYKGFRQEQLRIRSLLDLTSDHLPLLIELEETPKWEVGIRKMLPPRSNLG
VYRACLEDTLELNVTINTASELESYVDHLTAKITEAARRAAPQTLPHSRTFRRSLLSPEARSLLADKRRLRRLYIRNGDL
STKAEMVSASNRLRRLLARTRTENLDSFLETTGHDGNSTFSVWKLTRSIKRQPVFTSPITDHSGLWLRSDEEKANAFADY
LETTFKPFDFADVAQRRKVAESLDAPLQMALPIRSISPAEIGTQLKMLELKKTPGCDEIDNRAAKALPRKGVMALATIFN
SMLRLGHFPKQWKHAKIVMIAKPGKPLTQLESYRPISLLPTLSKVFERLLLSRLLELDEVTRLVPDHQFGFRKSHGCPEQ
VHRAVKHVLEAFEQKQYCVGVFLDVKQAFDKVWHDGLLFKIKLILPAPYFSILSSFLAGRTFNVAVKDQRSAIKGIRAGV
PQGSVLGPMLYTLYTADLPTQGQSNEDLSPARLLVATYADDTAFLASHKNLQAATSAVQDWLLQIETWTAMWNIAINCAK
SACVTFTLRPYSCQGLRFDGXTIEQTNSFCYLGVHLDRRLIWGPHIAATRAKCLRRLQKLDWLLKPQSKLHISTKTLLIK
TMVTPIWTYAIQVWGTASAHQLRRIRVVQAKAARKVAGLPWYVTTDAIERDLRLTKVGDQLNFFSSRYSDKLVQHPNAAA
RALAEPISERRLRRLHPDDLPTRHIT
>Jockey-1_DGri_gag#LINE/Jockey 607-2577  [Drosophila grimshawi]
MSNTPPTSTAGDAPDTAATVSWCSPSLARLTSEHRYNLRTRLISSNNNNATKLANANSANSHNNNINKNTVNNKSNAHKS
ILCNKNANNNNTGSNNNANTNVNNANSNNNNASTNNNLNYNNPNKKRKIATILEEIDLDAVPSTSAGVRAAPQALEDLLS
DSDADVDLVDMEEVPASPIYPPSASTRNEVASDEELHLSASAEIRDCSQFNAPISDTVEDRPTRHAKPPPLIAEGITNVA
GLLQALNDVTPPDSFMLKCNGGGTVRVMPNGIDAYRAIQRLFTDKRIPFHSYQLKEDRGFRVVIRGLHPSLQKMDLIRDE
LGRLGHAVRGVQTIFSRATKKELNLCYLELEPATNNKEIFNLRSISQVRISVECPDRHTDIPQCHRCQEFGHTMKYCQKQ
HRCVKCGSAHASRVCEKPLDADPKCANCGGNHPASWKGCLAYQRVAKERKLVAQSRRPAQDPQKSRPRSPAPIRRENFSY
ADAARLQMAPQTPQQQQQRHCQQQVHPEQQQPRQRPQQQQQQLSSVHQVTPQVPKQQHKKKAQRHKTRQMLRLRERIEKQ
NKHSQQHQQQLRQQQQRHQQQITQQERQQPRQHNQHQQPQRQHHQQPPQQQFQLVQQPYLYHEHSQLLFDSLMSKFDKLS
ETLTAMMSLLHDALANR
>Jockey-2_DT_pol#LINE/Jockey 1990-4734  [Drosophila takahashii]
MSSLGIRFSFWNANGVTGKSLELEHYLTANSIDVMLINETHFNSRSHFRIFGYDLLTANHPSDRLRGGAAILIRSHLQYS
PYSTNSTVKCQTAAITLSTDLGDIVIASIYCPPSFLWTAQDFGQLFSEFSNRFIIAGDWNAHNQFWGCIRSSPRGVQLLD
HITSSSLQVLATGGPTHFPSDARRNPTAIDFAIYKGISSNFLTVHESHELSSDHIPLEILLCASTSPRLTTPRLLSRRAN
IGRFKDYLTILIENDESADLNCPLDIDTAVSDLTLKIQSAAAASTAIGNRPAVPQPNNALSNTRVTALVRQKRSLRRRWM
QTRHPQDLAIFKRADTLLRKALYDAKSEFFVRKLSAIDPDADRGFELWKCTRGLKRQPLQKFPLLRSDGTWANKDDEIAK
EFADSLEERFKPFDLVTDEETAVTEAFDDVPSGPASQISPIDAEEVKDQIKRLKTNKAPGHDSIDGKVAKALPVAAISFL
TRIFNAMIVLSYYPEQWKHANVVMIPKKGVXPRCADSFRPISLLPTFSKIFERILLKRLFSVHMFQDAIPNHQFGFRSLH
NAAEQMHRVVNHILKAFEAKKYCCAVFLDVKQAFDRVWHCGLLYKLKPILPPTYFDLLRSFLIGRTFQVDVRGSKSASRP
ILAGVPQGSVLGPVLYTIFTSDLPSPRGRNVLTATYADDTAFLATSALRREATDMVQDMLNEFEAWASRWNIAVNPAKSQ
HATFSLNRLNTYRLTLDGTPIKHSDTVKYLGLTLDRRLTWKQHIVATCASVRQKAGKMRWLLRPGSGLSITAKTRLFKAT
LMPSLHWGIHFWGTACNTSIKRIESCQSKILRHMINAPYYTRNTTIFRDLKINPVCKSITNTAIRYRSRLVSHTNRLAFT
LSRPMNRRRLKRLHPSDNWILGRHACGKLIPDLDA
>Jockey-2_DYa_pol#LINE/Jockey 1257-3548  [Drosophila yakuba]
RTNRHSNTLTLDENTSRLLEEKRTLKRIFKATRTNEDKAKLKAAENRLKKAIKTLREKTINKQVEGIDTKNPDRMRQLWR
LLDEGKKKIQPNFPLKLETKEGYKWTKTTQETTEAFVSHLEGRFKPNMIIPDCHISKINTGLKTIKESNTAERENTNKNP
HNQPVTLKELREELKNLNNNKAPGKDLITNKLIKNLPTKATLYLILIYNSILRIGHYPDNWKHATVKMILKPGKSANDPK
SYRPISLLSGFSKIFERLLLKRLVRIDSFKKAIPLHQFGFRKDHGAEQQIARVTQFILEAYERKEYCSAVFLDITEAFDR
VWHEGLLLKLAKILPFNLYTILESYLTNRTFEVKDPTGEPSRTGQIGAGVPQGSNLGPILYSIFSSDMPIPRTHSVSPTG
EMLLSTYADDTVVLSTDQLPTAAIRNNQNYLETFSDWADKWGIKVNAAKTGHVIYTLKNDLPTNLKTIKIRGNKIKNQNK
QSYLGVILDNKLTLSSHVTKLVGKFTAAHKKLTWILSERSKLPDNTKMLIFKTILSPIWQYAIPAWGPLVTDAQIKRIQV
EENLKMRKVCRAGRFTRNQFIRDKYGVKTVEDYYKQATHRFYETIKTHPNKAVRRIVTRHYIPKRLERSRQRLLKLTKEH
IPQGPTGLTSPKLPKIPELYECKTLKTRKERDSIRTRHLEDLPTLLRLEEMEDIRIRNQEEMEKRERENEKWPPDRWCEL
EINMYNKRYRNGDLTRQEIIKKFRGQPIGIQRIILPDYEGDTT
>Jockey-2_DYa_gag#LINE/Jockey 323-1264  [Drosophila yakuba]
MTQTNNRETFKIVFWNACGANNKVDELSLLIQREKAHIVIVTETRLDRKSTKLDFPGYVTYLAQNPVSSKRGGVATIVST
RVRHSALEAIEKECIQSAPIVLLPENNRRNEMMVIASVYCPPQPKWSSSHFSDILNYAEKILGGRTKFVLCGDWNAKHRQ
WGCSRGCQRGAALYDAVKADTMTEIIATGCATHFPFDSRKNPSAIDFSISKGLGMYEKKISSSSDLSSDHLPILLEINLD
RNTFFLHKQNNSILKKNTNIVLFKNALDRKVLLNTEIRVAQDINDAINIFIKNIMEQLPPQTTRQPQKQARAN
>Jockey-5_DVi_pol#LINE/Jockey 2608-7410  [Drosophila virilis]
MKPMTRIIMNNLNSSPNNLNTTSTTNSNLDAYSGNQVGSPFRIAYWNAAGVGNKLLELELFIQRHKIDIMMIIETRINTS
ANTIISSNALKINGYLTYFATHPDNYKSGGVAILVKNDIKHIALQPISENFMQCAPIALMSSERNKNRIIIAAIYCPPQP
KWSSEQFSRLFKHIDDGCNGSSGFMLCGDWNAKHTWWGNIRGCKRGKALMDSVHKNRRYNILATGGATHYPYDRRKMPSA
IDFAVYGGLQNARLRTYTTTDLDSDHLPVHIEMGIEGLNVANMMKGNRKILLPVNANIKKFQEYLNRRILLNIEIRSGAD
IEDAVDILNKNIYEAAADSIREQRHGQDKLYRRTNSGQYRLNGHLRGLIKMKQVYKRQLMLLRCPNARKMYRQVQNRLKK
ELCLSKVNTMNELLKQIDVQDRYKMQKLWRLTNNLKRQPQPNWPLKLEIASGSSCRRNGNITWTRSNEEKAEAFACHLEK
RFTPNLTNTQVVRNLIADELLELKRKKLEQFEENTDSMSVLPFRPISVSETMLEIDMLELNKSPGMDNIDNRVIKSLPEK
AVIYLVLIFNCILRYGFFPRQWKCAEISMILKPGKSTGEISSYRPISLLAGFSKLFEKLLLNRLFECKEFANAIPSHQFG
FRKDHGTEQQLARVTQYILNAYEKRQYCSAVFIDISEAFDRVWHAGLLVKLIKLLPLALYNVLESYLAERIFIVKCNDGI
KSRPGKVCAGVPQGSVLGPILYTIFSSDMPLPRLVMKEYASFEPNKMQLSTYADDTIVMCASQNILEAVNLNEKYLIHLM
RWAEKWCIKINSSKTAHVMFSTRRLDATLVRLCPMINGQTIENNGRHRYLGLVLDRKLTLNIHITQLCIRLRGVHKKLDW
LLGKNSRLARNCKAVVYKQLIAPIWQYALPVWGALVSNSQIKRIETMQNKILRACMNASWYTRNQTLRDTYGIKSVDEVY
QLASDRFAKSLSCHPNIEARKLILEPFIPVRLLRPRYTEQLDRCMAPLRQQQLTQQREVAEERLPTLLQLEEDEQEAERR
AAMLAEWEQRRAMGPPKRFDECTINMLRRKLKAGTITRENLMLLIDNQPPQIQWLILPELQHEHLQRQHQELIRTAEPAP
GAIIQSAIDTDELQLERSLDMLEQALGQEMDEALIIAGNNIQIEMQQRLADNESVQLNTNELQMQHGQRLCGSSTNNTNA
TNTNNVNNDNDSDFDNDEFELFLSTYLQKKAELNPSLVHSVQPGPLSMRRQNNLYPSLVYIVQPGPLSLRRQNDLHPSLQ
PETEPGPLSPRWHNYVHPTMQQQLQPDSLPERRQNNTNSEQLPLDLPGLIVERLVDRCPTTQQLMEPGPPEKLEMQLVPV
RGQPGPSRPPSMTEHDLQQRQSTPVKRKVENLMLPAKRRCTYQMASIRRRLQGPLQDELLPDKRQWQQQRIGQEALAVAG
PYPMFFTAAIPEKRKRQFRRTPQCRKKARTCLPAHAELVRAPLQTELQWSMAMLRPRRSPNWPTERGPYGIQNAHHVHDT
FICSDSCLHSGVHKKRQHNPISQRRRRRMRSNAHARLIAHQQMNASAPVWRPVHGWRRLAHRKARPLSAIIKSDSNFDIN
L
>Jockey-N1_DVi_gag#LINE/Jockey 45-1853  [Drosophila virilis]
MMPAEIMQVSENELEASGQQSLPINEDMLGTRICGSPKANTVIKRPIKRKFSPTMPANKSDKRALLLAYAEYITNADSVR
DTPSYSDFFKSNTANKVSDNLSSDNNIPAAKARKSTQXNNGTNVGKTNNATFVANDNNNEDSDDIDIMEVEDEATDCNPN
VISGQTMQLNLAQRVKVPTIYLPNIDDIQRIIKDISNNVGANKFATKSTQTGGVRVQCADIEAYNATIALLDASNVHRHT
HQMRNERGFRIIIRHLHHTTPCDWVRMELRRLGHEVRYVGVIKQRFTAKPINTFEIELVKNENNTKILELKQLGSQEIKV
ERQRKRTDPVQCHRCQAYGHSKNYCRRPFVCLKCGQGHPTTTCSKTRGEPSKCANCQGQHVANYKGCKAFKDERARLSAN
RARVMPIQHEHKQPSVNKRQHGTQNVVSNQDREQHQQQKNQKMQSNIANSTMTYSQVTSGRVNTGRMHNPAMQHLLKFQK
KLQMEQEEERQKNQSGAANASNTTGASHHQQQQQQKQHKNKQRQQKESQEPVNNAAIDALNSNMAAIMQMTTKLDQVVAL
LLKIVAKNNINAYPATKLHGTATRTLASLTASSSSDANDTRNE
>Jockey-13_DBp_pol#LINE/Jockey 433-3088 via tfasty with DOC6_DM_pol, 1 frameshift. [Drosophila bipectinata]
MCIQTSNSPDTLNIMAWNARSIKHKRVEFIKFLQDNNIHVATISETWLTQTDRFNIPNYTVYRRDRKENRGGGVAIVVSN
KIEHEQITNLKTHLIENVGIKIKTAPNNNNLKLYAIYFPGYTAKCLTASCNVAGDRNRLKTQYRSDLLKISKLQGNFIAC
GDYNSCHRTWNCDRANCWGNILNEISDLGKFNVLFPFHPTYIPRCHKAKASTIDLCITKTPNQVSNPTVLQNLSSDHLPI
ILKYSINFLQNEKHQPIISKANWTKFKEFINDRLLDIGISKYKSCCSISDIDFLVNSFTNIVNDGFREAVPHKRQTFTNY
KIPHHIRELFKIRNTIQRQWIRSRQPILKARCDHLNYVIQQKLFAHNNTEWNSKLQQIGKCSKPFWKITKALKKRKQFIP
CLCLGDSSYETGTEKANVLADIFEQKHKLTTSFSNPETVNLVQYSIQSIANYDINTSQVLKTTNSEISSIIKALVTRKSP
GDDGISNICLKNLPVYAISFLVQIFNHCFSVGYFPNAWKTAKIIPIVKPGKLASRPDSYRPISLLCSISKIFEKITKARI
VSYLDTHEILPSIQYGFRTKLNCTVPSVKLTNYIKENMQNKKSVGLVTLDIEAAFDTVWHDGLVHKLKNMELPTYLIKIV
HSFITQRSFYISLNGEKSTQRSILAGVPQGSVLGPVLFIIYTHDIPQMTNCKLSLFADDAAIYTSGVLYNDIKYIIQNYL
YKLEEYYHKWKIKINPNKTQAIFFTKRRKSCYLPNDCLELCNTPIEWVNNIRYLGIHFDKKLTFSTHVGVTIDKINQTIR
ILYPIINRKSKLSIENKLIIFKVIFRPALMYGHSIWGKCAQTHIKKIQTCQNKLLKLLLNLPYYTSTKYVHEMSGVQTVQ
QYISQ
>Jockey_Ele2_gag#LINE/Jockey 178-1533  [Aedes aegypti]
MIRKNYDKSKVRITSTQTEISTMVDNDLLTANVQQRRRHNSTDENSMRPRNQSSDSGHQFSSQPIAGCSNANNVLIAVPN
VPTENPFDTLMDNEELQERVTPQQSASKIHCPPIFVQNGTVKDINKLMSSLEVGEKNYAQKIIKGGIRLHVKEKTKFTVV
VAALKSENVKFFTHGTSDEVPIRIVLAGLPVLDLEEVREELKQANVLPVEVKLLYSSKDEDSALYLLKFPKGAVKLKELQ
KIKMLFNVVVSWRFFSRRIGEVIQCYRCQKFGHGMRNCNMDAKCVKCGELHLTKDCTLPPRRATDDRSKIRCANCSQNHT
SSYKGCPARKNHIQENEEKKKMQSSRRRDAPASSHAPGGRSFRSTFVTPSKSFADAIKDGSSATVVAAAAVAVDGAAGGG
GYAGPDQSELFSLHEFMNLASDLFTRLSSCKTKAQQFLALSELMIKYVYNG
>Jockey_Ele7_gag#LINE/Jockey 529-1788  [Aedes aegypti]
MGRNRKQKADSASIPAPLADSGQTSAPKRARNEDANPAAYNSRLLASNQFASLPVDQVPQKAKVAPLFAATTDIAALRTE
LAALNIKPLFKLCHTGTKVMCDSRNDYEKAGKLLKAKGLEFYTHDAPGSKPLKVIIRGLPEYTPEAIIEEMVSAGLKPTS
VFPIRRAQGGRHRDQLYLAHLEKGSTTMAGLTRVRALFHIVVEWERYRPKKRDVTQCGNCLALGHGTRNCHMKPRCGKCA
GAHATTTCQPMEGTEPKCANCGANHEGSSRNCPKRAEFLAIRQQASAKKLGRQRQRQPPPPLTEEHFPTPRYQVPNLPPL
QPTHRQASRQSAPSVQQRLAAAAAAPSVRNAPPPGWGNPGPSASGTPPPSDDDGSLYTPEQMLEYTRNLFQRLRACRSKS
EQIDAANSVVFAFLSKYGP
>Jockey_Ele5_pol#LINE/Jockey 1333-3984  [Aedes aegypti]
MANGLKVLLWNAHSVKPKDVELLDLAEREEAQVITITETHLKPGVNFCLPGYNTVRLDRTATNGGGVAIAVKQPIKFVIQ
PDYRTSVIEAVGVEIATPDGPLLVIAAYCPQQCYEGSGKARQFKNDLVKLTRHRKKFIVACDLNAKHEAWGNHRRNRNGN
LLFDESQLGYFVVNAPKDPTFLSPAGIPACLDFFLTNMEVPLPTTINELSSDHLPVLLRVGGDAEREQRRTRKDYHRVNW
VVFQRKVDSRVDAEVQLDTVEDIDLAVENLQAAIVAAESECVPRVQIVSSQLQFDPELRSIMRARNVFRRQFQRTGDLSK
KSQANYLTKIIALRVQEMRNDRFERDVRRMDPFSRPFWKVAKILKSKPQQIPPLKCDENLLVSPLEKANAIASSFSKNHL
IGSHLVSPMEQAVSDTLLTLNNTPCYVPDNKKISVEEVSAAIKGAKNMKAPGFDTLFNLVLKNLSVSALSHIANIFNRCL
DLNYFPNCWKLAKVVPILKPGKDPTSPKSYRPISLLSALSKLFEKVILNRVLDHVNNNNILLQEQFGFRKGHSTSHQLYR
VTNIINKNKSVAKSTVMGLLDVEKAFDNVWHDGLVYKLYRYNFPNYLIKIIQHYLKDRQFRVALSGELSDSLQIPAGVPQ
GSLLGPILYSIYTSDVPQLPDGCYLSLFADDTAIMVKGRNTRTTVKKLQECLNSFQQYASLWKIKLNAAKTQVIVFPYNR
SPKLLPPDDCKIVMDGVSIDWSTDVLYLGLTIDQKLLFRSHVEKTKTKCNKIVKALYPLINRRSKLCLKNKIAIFKQIIS
PVIDYAMPVWQSTAMSHRKTLQIVQNKALKMILNVPYHTKNTEVHDIAGVQMLDQKIIANFDKFKAKCQQSEYAMINTLF
QQN
>Jockey-9_DY_pol#LINE/Jockey 2675-5389 via tfasty with Jockey-4_DPer_pol, 2 stopcodons. Consensus has large (in silico?) duplication [Drosophila yakuba]
MLERVILKRILNLDSVANDELKVFLGANSLDIMLVTETHCQSCHNLYFPGYDIYHANHPSGNCRGGAALLVKSGIKHSPK
APMVSWKMQIASVIVQTNSGNVVIASTYLPPNESWARADFDHLISSFGNRFILGGDFNAKHQWWGGIRSCSRGRQLQEAI
ANSSCQILATGEPTFYSYNSXLTPSALDFFIVNGIPDNKXSVDKCYDLSSDHLPLIAVLHHEPQLKTRRQQLLPPGSSVE
IFKAELESRISLDMYLNSAEEIEEAISSFMSKVQIAAAYASPNSPQHPGHHQRGQLPPNAAALLCLKRRVRREYARTGDA
RVNSIYKRLANRLQKVLKSSRQAEIDAHLENASPDASSNYSLWKLTRRFKRQVVPKAPLKNPLGGWCLSDTEKAETFAEN
LQQRFQTLDITDDSMHTKIQASLETPYQMSLPVSPVSFGEVSLLIKQLKLKKCPGEDQLDNRTIKNFPFRAILFIVLIFN
TILRVGYFPKLWKSALITMIPKPEKQPTEVNSFRPISxLPALGKMLERVILKRILNLDSVAMSIPKWQFGFRKSHGTPEQ
LHRVVNFALxAMEEKEYAVAVFMDIQQAFDRVWHKGLQCKLKSLLNPQLHQLVTSFLEDRTFCVTINGIKSSNRPICAGV
PQGSVLGPTLYSLYTADMPTPRSVRTVDTDDVLIATYADDTAVFVRNPSLVIAAEALQEYVCSFEKWAQDWNIGINSSKC
ANVTFATRPGSCGNITLLGSVLEHKPYYKYLGVILDRKLNFGRHATLVKHTMLSKAAKMSWLMSPRNKLSLKNKVAIYKT
ILSPIWRYGLQVYGIAAKTHINKIRTAQSKILRTMCNAPWYMRTSDIERDLEIEKVGDVIQTLAQKYEDRLNRHPNVLAR
RLLRQXVRRRLKRLHPQDLSFRTMS
>Jockey-6_DAn_gag#LINE/Jockey 424-2181  [Drosophila ananassae]
MSSLSDSDDEFDISKIVARQQQKIQALKPAKPSRPIASPVNISPSSHDPEPELAVINGDEEVWWSPRPANKRRLDSRSPN
SVTKILRNSNSPKTNVSANRFSDLSDMDTDTEPVEVPQTVGPNVSEEASTSSSLRQVSNNNKSTPNNASTINKDNTKAVN
NTAGSNKNVSRPSGSQEQLPSHKPPPIVVDHCENLNGLIRSTDKIVDPSKYSLKCHPNNSVSILATDSDTYRAITKSLTL
KKVPYHSWQLKEDRSYRVVIRGVHHSVPDVDIKESLTSAGHLVRFVNRPRSRFDKTKLVNLVFVELEPAANNKEIHGIKT
LCRQRVQVELPYKKNDVVQCHRCQAFGHTKNHCQKLSNCVRCGLQHGLEACLKDVNPVKCANCGGGHTASYKGCVIYQQV
AQRKSATSQRRTVPQQFTDPYVWSNSAVPNSYANAVRGIASHPQQQQVPVTFSQSZXFPPPGSDNRKQSQPRHQKVPHRQ
QQQPSQQQQRPQQHQQQQQQQPDLQRTLPQQQRRNSQQLINDQQWQRQEQMFLQSNESLSVLVAQIDKLFQMMVSMMGLV
SRLLPQNTPGTAQAFPGSFPVNATQP
>Jockey-6_CQ_gag#LINE/Jockey 158-1477  [Culex quinquefasciatus]
MKPNVRLKGGSAKNSNLTSQRVVNAAKNSRIQRQNMFESGRRTRSLDRITPGGSSSGSGGYQTRSKTNGSSPFLSQNCFD
ALGDDDAGDGVQGEPEKKQPRVRIPPIHIMGKSVGEVVKLLATNGVPQSDDYWLKYTKTSVQFQTKVKELFTKTTALLKS
SDVQFFTHDTSEDAPTKFVLSGLPAVSIPDLKEELEAMGILPLDIKVLSSKKSGADEHTLYLVYFKRGTVKIQDLRRTKA
IFNVVVSWRFFSKHPNDAAQCHRCQQFGHGSSNCNLRPKCVKCGGKHLTDVCMLPRRAELNNNNNSKSQLKCANCGGSHT
ANFRGCPARKAYLDELEKRKKKPSRPAPPPSGPAPGRNSGAQGGPTHRSSFAATGRPTYAQVSSMNTPPCANLSDGEGLF
TVTEFLSLARDMFSRLVGCRTKQQQFDALAELMAKYLYG
>Jockey-6_DEl_pol#LINE/Jockey 1932-4613  [Drosophila elegans]
MDPLRICFWNANGASQHRLELLQFLNTQDIDIMLLSETHLTNKNHFYLTGYIFYASNHPDGKAHGGTGILIKQRIRHHPL
EAFAYNHIQATSLRINITSGPVTLSAVYCPPRFNISENEFLGFYNSLGNCFIAAGDYNAKHHYWGSRLINPKGRQLYNAI
IKPGNKLDFVSPGTPTYWPADPNKKPDIIDFAVTRRVPSRLIHVETLAELSSDHSPVLLCLSEHPQFVERPQFLTSNTTN
WLKYKKYISSHFEIEPKISCEADIEDSLKHITDVMSSAAKHSTPELSATSPPKTTRTTTQIQSLLQEKRRLRRDWQAHRS
PATKQRFKEACRKLSKALLTEKNQTQRAYIAQLSPTSNKFPLWRAHPNIQPPIEPDFPIRSPTGGWARSDEEKANIFASY
LKNVFQPHPPTNQFTLPNISPAEPSSTIILETSTIIKAIAEQMNPKKAPGHDLISPKMIIELPLCAVKSITTIFNSILKW
GYFPTQWKKSVITMIPKPGKDKSQPSSYRPISLLPCLSKLFEKLLLCHLRTHLQNDRAIPLHQFGFREKHGTTEQVNRIT
AEIRTAFECREYCSALFLDVSQAFDRVWIDGLVHKIKTVLPQNTHKLLESYLKDRVFTVRCKXFFSANHKIEAGVPQGSV
LGPILYVLYTADIPTSSQTTLSTFADDTAITSRSKCPKTATAYLKNHLGAVEKWLADWRIQVNEQKCKHITFTLNRATCP
PLALNNKQIPQVDEVTYLGIHLDRRLTWRKHIEAKKISLKLKANSFHWLINSRSPLPLELKVVIYNSCLKPTWMYGSELW
GNASSSNIEIIQRIQSKILRTITGAPWYIRNANIHRDLDIKPVKEEIDSKVSKYEARLSIHPNQLARQLRRLSNHSRLQR
NDRPLLPNLGPLTN
>Jockey-8_DAn_gag#LINE/Jockey 138-1754  [Drosophila ananassae]
MSSLSNDQKNERRSSVNQRNGFYSYFSTRDIEMEKSAIKSKPALLTAESHRARSCSPALLTPTPASWSSQCKTPPPMAEP
NFAPTTSSAAISATTATSTATQNTATSTITASTKTTTSESAKTAPAIQTGLDRYIQFKRKLSPQSXPAGNKTKINRVQKI
DEEPGRSSSNRFALLAEVDENQPAPDTAKKPKPPPIYIREKNSSALVNRIAALIGNGDNFHVVPLIKGNIHETKVQTKTE
EHFRIVSKYLDNARKNYYTYQLKSSKGIQVVVKGIEPDVTAAEIKTALKEKGFAAKNVINILNKDKKPQPLFKVELEPES
RSLKKNEVHPIYKLQYLLHRRITVEEPHKRNGPVQCTNCQEYGHTRSYCTLRAVCVVCGDTHNSTYCTTNKGSTAKKCAN
CGGNHTANYRGCMVYKELKSRMRQATATRNQNPQNVYIASKTTPDVFFAKAARSSFGPLNTTNDFSYADALRSGMENPNQ
PNSHSAQQAPEQPHSKTETMMLTLQQSMMELMSFMKTTMQTLVQNQNMVIQLLVAQQSK
>Jockey-7_CQ_gag#LINE/Jockey 235-1380  [Culex quinquefasciatus]
MNTSNNRIPPFIPLRNDFDILDDDDNGDGQNGVEQAKKAPKVRLPPIHVMDLSVGDVFKLLNDNGLPRSEAFLLKHTRTS
VQFLTKSKEVFDKAVSVLKSKNVKFFTHDSSGKAPSKFVLSGLPLAEVEDVKEELARVNILPRDIKVLSSSKSAVDQHAL
YLLYFDRGSTKLQDLRKTKALFNVVVSWRYYSRRPNEVAQCHRCQRFGHGSTHCYLSPKCVKCGGQHLTDVCSLPRKMEL
NDQNNSKSKLKCANCGGSHTANFQGCPSRKKFLDELEKRKKKPVRQPAPNHTSREAFPSLGQQRSGPRTSNFPAGHRTYA
QVSATSLPPAPDVDAEGEGLFSISEFLALARDMFARLSGCRSKLQQFNALAELMVKYIYHG
>Nimb-1_CQ_gag#LINE/I-Nimb 350-1714  [Culex quinquefasciatus]
MASSGGGMYAFPPTLDPSWSLKGSSRYVTVQAPNKGSLATVNIFLVTKSIRACATVEDIRKNFKAGTYTVRVPNEAQAKQ
LKDKLTVLGDQITKVEVVDDEFRNTSRAVISCRDLIGVTEEQIVEELSEQGIKAARHLKKGVNKVETGSVVITFNKPHPP
ERVQVACHSVAVRPYYPPPALCYGCFEYGHISKNCRGAKACANCSGPFHGDNIDCPNPAKCKHCGEGHAATNRQCPKRKT
EEEIVRIKIDRNIPYHEARKLLESRTNAGNYAKVAAAGSMNTAEQVNIEEEKNKWLSEIKKKEESLKVLELKYEQKFEEM
LKKQSEVDQSYLKLQKCFEKSSMQIEYLTKELENKQHYITLLEQKVKTLTSNKMTPNEERRPMPTKRDRSSEAKKNDELD
SDDSNRSRSPAPKTLAIETTTTSKDDLISLSETIYVEVESSSSMEFDPNSISPNS
>Loner_gag#LINE/I 401-1777 [Anopheles gambiae]
MEAEPMDESDEGFITVKRKSSDPGQMAKKKVLHEPLASTSRDDSAKANLKSRAKTYHASFNGAHNVFFMPRTKPLDVRSI
TASIYKKYPGVLDVIRLHPKKLRVTAKDRVQANAIVADPDYTEDYRVYIPGGLVEVIGVVDDFEYPLEDILQYGQGAFLY
QSSPRVKVLEVKKLYASKMVDGKKVFRETSSLRITFEGTVLPNTLYFEGLRVPIRRPFVTKVATCSKCSQIGHSEPYCTN
SVRCGKCKGPHSTAECKADTQKCFHCKQQWHEVSTCSVYRKTQAEHKKAVLFNSKRSFADVLKKTSEVNPFDTLSLLEGN
EPLPNLAPLTGVKRSITPRVSIKGIRKNKTVPPKKAPRRHVDATQRQSQGPMPPRDVRTRPPSRNPPNPSNLAFPSEPRS
FSRQSLPSLTEILQSLLDSLSLPEPLSGLIPLAFPFLRGMVRQWLSKWPCLSMMVRLDD
>Nimb-2_AAe_gag#LINE/I-Nimb 630-2009  [Aedes aegypti]
MATAISSLDPPWGGHSKHGADRNDRTIPVWMDRHGMHGQRIILSLRAAEGENLPENPFILSKSINQVCGGNVEAANTEEK
DTKYVLTTRSVNQAQKLLKMKQLIDGTKVEVVLHPKLNVRNCVITCRAAIKMTEENLLEELAPQGISKVRRITRYENGQK
VNTATLVLTVNGTVVPEYINVGLLRVPTRLFYPAPMLCFNCYSYGHTKMRCQNTPVCKVCSGTHTLGKDVSCTQQPACKN
CKDSHSPASKKCPLYMKEEEIIKIKVESGVSFAEARKEYQRMHGDRSYSAVTGAQARIQDIRKENEKDVEIRKLKEELAN
LKEVMSQKSEKEKEDETVKLREEVIQLRKIIDDFKNGPAKQQMDTEERNEFSISEEEMSNAESQSVNNDNESEGYAPVAK
AVRRKSKRTLAKSVKTVREKEGDDTDRSRSSRSGHEPINKEKSNSSQKKRGRPPKHRDDQ
>55238095_Aga_pol#LINE/Jockey gi|55238095|gb|EAL39774.1|  ENSANGP00000025957 [Anopheles gambiae str. PEST]
KIPANYRPISILSCMGKIFEKIILKKLDSHTKSHNVIPSFQFGFQANFATAHQLNRLANTITSNRNSKKSTGLVTLDLEK
AFDTVWHDGLIFKLISNNFPPKLILLIKSFLSNRSGSVHLHSFCSIHSFTKPFKPLAGLPQGSVLSPILFNIFTSDISKM
KGVKKYAFADDFAISSSSSNPDSILCSLNKGIRKYVTLCEQWELKINDGKTEAIYLTRCRSARNLPNSSLMINNNEIPWN
NTVKYLGVVLDKKLTFQKHIEEKLVSGTNAIRILYPFINRNSKLNLRNKLLMYKSLVRPIITYASPRWRNSAKTHIKKMQ
IFQNKFLKRILNLPPWYSTSIIHRKAKIDRISEFIEKINIKY
>Nimb-2_CQ_gag#LINE/I-Nimb 771-2078  [Culex quinquefasciatus]
MAALNPLPPGDPPDGNAGPSGTNVNARTMPEWMDRQGMFGQRIVLLLQPTGTSMLPNNPFVIGKSIEKTCGKIESANTEE
NGTKYALKTRSVDQARKLLAMTKLIDGTKVEVVTHPRQNVCRCVVVCREAIELSEDELVTELSAQGVVNARRFTKREGNN
RVNTATVCLTLNGTVVPKHIWFGPLRITTRLFYPSPMLCFNCSDYGHTSKNCKKEAVCFNCSLQHTVEPSEGGRCILDPY
CKHCKGAHPATSKECPKYKKEVAIIKIQVETGVTFAEARREYEKRNQAHGLPTHAEVVGAQKRLEAIGKDNEKDNEIRLL
KEEIEKLKNTAMDKNKDEVITSLRYELEQTKRLSSALMKKLRENKFAKNDSEIESDKDSSEKEGSPKQAKFAKGQAGKLQ
DNTSSQPEKNPRRGRGRPRKTPTLEPGKFDAEMHST
>Loner_Ele4_pol#LINE/I 1833-5525 [Aedes aegypti]
MASSKNYNLNILQWNCRSIIPKIDRLKVLVVNCDVDIFCLNETWLEETKSFRIPSFNIVRKDRNTAYGGVLIGIRENIEF
KYLDFTIDSEIEYVAVSIKHNGLEFSIICIYIPPQTKFSLLELKTILNNIPSPFYILGDLNAHNLAWGSHKTDGRGSLIM
DVIDDLNLNILNDGSFTRIVVPPGRHSCIDLSICSNCLSMNSSWETVEDANGSDHLPILISIYNPNFNQNNLEHCVPDLT
KNVDWVKFSDLVSLALLSFDNSLSTIESYDNFSKLLVECLKKSQTKKIMQSTSKKKHSSFWWDEDCTIALKNKSNAFKLF
RRSGSREHYILYCKTEAQFTRVTKFKKRNYWRNFIENLDSDTSLSKLWTVARNMRNYNVSNIPVLEYSEDWIDQFASKIC
PDFTPLDIKYKNSSSYNYFPNLCTEFSIEEMDLALSITKNTAPGIDNIKFIVLKNLPIDGKLHLLSIYNNFLFQNIFPME
WRFVKVVSILKPGKNPSLVESRRPISLLSCLRKLMERMILNRLELWAEKNNIFSSSQFGFRKGRGTRDCVALLTSHIELS
FNKKQDVVSTFLDVSGAYDSVLIDLLYNKMIDCKLPLIIANFLCNLFSFKIMHFFHNGATKMIRYSYFGLPQGSCLSPFL
YNLFTRDIVSIIPNGCYFIQFADDKVISISGKNREVIRHFMQSCLDNIDTWAHNNGFTFSVQKTKFIIFSRKHSPIDIDL
YLNNHHIDQVFEYKYLGIWFDPKLTWNNHIQYIQTVCSKRINFLRTITGTWWGAHPSDLITLYKTTIRSVMEYGCFSFGS
AVQSHFSKLEKIQFRCLRICLKLMNSTHTKSVEVLAGITPLRIRFDELNCKFLFQCFSNNHPIINILKSLYEINPSSKIL
SSFIYCSAHNVMLDTSPGFHEYSMNVHSFRPHIDFTLHEELKNIHPNARASFANLLFQRKFIGVEPKQIYFTDGSLINNV
AGFGVFNFHIAHFFKLETPCSIYIAELTALHFACCLIKNCAPNIYMVCSDSFSSLHALNTINFNFKTSNIILSIKEILND
LFCRGFIIKFVWVPAHCNIYGNEQADSLAKLGVSRGIIYNRVIYPSEYFSKLKQHSMDNWQNTWNASDKGRYCYSICPKV
KCLPWFDQLSLGRNFICFYSRLMSNHYICNSHLYRINIKDSNLCECGESYEDIDHIVFNCTRFSLPRKAIFEKITKLGHN
IPNSIRDILACKNLNILKILYGYFNEISYFS
>I_Ele19_pol#LINE/I 1708-6666  [Aedes aegypti]
MDQGLHNKIRTVPYDYDSATIMDMKKEERNRPNTFDDSRNSMDSDKRPTTTTNTSSNTVVTKLKFQTITSEEYDRMHNLI
VVPSTSRTSSYITTIDSPSARLTTPTLTEEVPEYSEEPSAAVGVVCPHLRASIPIHPISVKQPNPTFIPINTGFDTTLNS
TTYSVWPTPLHAKSSESSAKVDSRKISYGTKRNSGIFRSSSNSNFHHGSIHQHKTDLPARCTRLTATIDSPSARPTTLTL
TGDVPEQSEEPPAAVSVVCPHPWASITSNFIFEEPNTASVPIIPGFDARSRSMESNSTSPTSVLQHSHGNVHQPAAIFDS
PSARPSTSTLTREVPDPSEEPLAAVDVACLQLSASIASFSPKDQSTATSLPTNTDLNIEVNSREVTTATTVPLQTSVEDS
PAELDYSSYWNPIGTEFNNHIADLQSPLQTSTDSDSCVTETNENSPTFAIQWNICGLRSHLSELQILLAKYQPVIVCLQE
TNGDYRKLSPSCLGKDYQLLLGQCSAHGRQGTGIAIKNGTPFQRIWFQTKIQAVAVQLGAPIAITAVSVYLPPKDKEAAK
HLGELLEELPKPIIVLGDLNAHHDAWGSRTVQSSSGAKQRGEAILELVVQNDMIVLNNGSHTRIDPATGTSQALDVTMCS
TSHAAKFSWKTLLDFSGSDHLPILVDTLCKQNQPTRRTRWIFENADWPLYEQLTNNSIKPGSQFTVDEFTNRIIAAAEAS
IPKTSGRVGPKSVVWWNQDVELAVKARRKRLRALRRLKEGDSRKVEALKLFQEARSHCRKTIADAKQKSWDTFVEGINPD
SPASQVWNNINRLQGKRQRNVITLNLPTGHTNNGEEVANALADEYQLKSSDANYPEKFRRKHKTEQRSIRKNQRPNLHKR
YNVDLTMSELMWALDRRTGSSTGADNVNYQLLQRLPFSGKVALLELFNQIWHSGTFPEEWKIGIVIPIPKPEADRSRPEG
YRPITLLSCLGKLFERIINRRLVTELESTRKLDPRQYAFRSGKGVDSHLAKLESLITLHEDEHAEIVSLDISRAYDTTYR
PGILRTLMNWRITGRMMNMLSSFLCDRFFQVAVNGALSTLRRADNGVPQGSILSVTLFLVAIQPMFDVIPSDAEILIYAD
DVILIVKGKNHVTIRRKLRRAVKAAVDWAASVGFTIAPTKSKLLHVCNLTHRKRGRAIKIDSIPIPQIRHLKVLGIIIDS
KLKLSKHLASVKQNCRKRMHILRILGYRLKRSSRTSLLRIGSALILSKVYFGIGLTSINFEALQQTLEPIYNDVVRQASG
AFKTSPTISIMAESGWLNFRLALIQRLCILVVGLIEKNEDAVAYPVVQRAKTLMLETTGWTLPNVCNVLRLSNREWYAPV
PIFENALRNNIKAGTNRAIVVPRFKELITSRYKIHDQIYTDGSKDRDQIGAGLTIGDRNYSFRLPGICSVFSAEAFALMN
AVSMSQGHTNVIILTDSASCLDALREGRSKHPWIQSIEKNIEGRNVTFCWIPGHSGIVGNEKADELAKQGCNQPSVDIPT
PAQDAVRAVKEKIWSYWEAEWNQSRCHLRAIKPTAGKYLDRKCPSEQRVLTRIRIGHTRLTHAHLMNNSNPPVCTYCGDR
VTVQHIITECRGLEGSRKKCGINGSMAEILAYNAENEKAVIQFLKDCELFDKI
>I_Ele16_gag#LINE/I 380-1708  [Aedes aegypti]
MSGGSSGPYGGAVGLQPRRNKPDWMLSPNDLGQVMVLVLRRKVNDTETSGQRTQDTPLPDTFIVGTSIELAVGTKEARAL
NATREGRGSRYLLRASSANVIEKLSKMTELTDGTKIEIVPHPTLNTVQGIVFDADSINRDEKSILEFLESQGVQAVRRIK
KRVNGALRNTPLLVLSFRGTILPDHVYFGLMRIKVRVYYPSPLLCFNCAAYGHSKKVCQQTTICLRCSTPHDVPEGEQCV
NPPNCLHCKTDHQVTSRDCPKFKEEEKIIRLKTDQGISFAEARRICAEETKKQTFAGIIQNQMHQELAAKDQVIAALQKQ
VAVLTKELANLKKLLKPSAQNHSPAPQEPRPSASSERSVSQTTQSVSNTDRLSRKDQSFISPPARRREIRKSNKLDYDVQ
TRSRSGKRPIETSPTEVINNRGKRISAQPETGNKPTNIETNYG
>I_Ele20_gag#LINE/I 407-1705  [Aedes aegypti]
MAASSSGDPGGTAARRLPTYMDPTNKFGELTFLQLTGKDGVQLPXNPYIVGKSVEMCAGGPIEDGKSEAQGTRYTLKVRD
PAQVAKLLKMTHLIDGTKVEVIAHPNLNVCRCVISCFELIHMDEAEILREMGGDGVIRVQRIMRLEGGKKVNTPALILTF
CKTTFPGHIKVGLLHVPTRPYFPNPMLCYNCFSYGHTRTRCPGPQRCFNCSGNSHGEEECGEAPHCRNCNDGHRPTNRQC
PVYKQEIEVIKIKVRDNLSFPEARKRAELQAQGSYAQVAAQQNEFDKKLKELEATMKQKDELIAKLLEDNRQKDEKMEQM
LAQIWQLKQQISSQEKPHSSREIKSAQPPSGVVTRSRNNSPALTRSRNNSPAIQETKRSRASKQHTDSLTKPASPDRQSP
PPKKTATTIPTQRSTYSDDDISISEIPPNHRLR
>I_Ele35_pol#LINE/I 2035-6339  [Aedes aegypti]
YALXTIFNPKKRISEKSSTRVTDHVQNEAVTNQDPTDDNNIHTAEALGSRGPVSADATPLPVLADNLRHPAASCFRGTHK
GSQTRSPPFPSTSGREKDKEVHTNSPMDSVGVMFGHSTSSSPSNSEQTQRRYPTRTRREPLRFQSETSVFQPLGPEATNA
DLYDRLHARRYGNSGTNQPGTSQHYPSLRTNQYSPAPVLSKSPIAVPPPNEVLSRSNAKKTPYASRCCKQNSCFALQWNM
NGFFNNLPDLQLLVRERKPAILALQEIHKASISWMETSLSGGYKWITMCCENFYHSVALGISAEIPFSQIDLDTELPIVA
ARISWPFPVSVVSFYLPNGTFSNLENQIRQILAQIPEPVILLGDCNGHHRAWGSKANNTRGIMMVEVANELNLTFLNDGS
TTFISGQRETTVDVTLTSASISHVLQWAADIDPLGSDHVPITLFLNDSPPETSRRPRWLYDQADWSSFQNLIEVSLDHTT
PDSIEEFVELIHDSARSTIPKTSPTPGRRALPWWSNETKKAVKLRRKALRAAKRLPAGHPNKDEATKKYREARNECRQTI
RKAKECSWISFLDSINDNQSTADLWKRLNAILGKRRAKGIALKIDSCTTRNPAIIADSLADYFADLCSLQRYTTVFLNRI
PTPAEAIKNFVVPPDRNQQFNEPFSINELALVLQQGKGKSSGPDDIGYPMLKRLPVRCKSILLGLINREWTNGTFPNIWK
HSLVVPIPKNSGIASETKHYRPIALTSCLCKIMERLVNRRLIQYLQENNRLDHRQHAFRPGFGTGTYFAALGQILDEAMA
RGDHIEIASLDLSKAYNRAWTPNVLQKLAQWGVTGNMLTFIKNFLSDRSFQVMIGNHRSKTVPEETGVPQGSVIAVTLFL
VAMNGVFQILPKGIYILVYADDIILISIGKTPKNTRRRLQTAVNAVTKWTDLSGFEISAEKSARLHICSSSHIPPRNPIT
IRGTPVPTKKTMKILGVLFDRSFSFRQHFTNLREDCKSRINFLKTISNKRTKSDRISRIRVADAVINSRIFYGIEITCRS
FELLVQNMSPTYNEAIRAISGLLPSTPAIAACIEIGTLPLVHRTVIAVGSRAISYLERTRGDGSVVFTVREANRILESVA
GVKIPPVAGVHWNGSSRWQSRLPKIDFKIKGNFRAGCNPTILRSAFQERISTKYTQHTIRYTDGSKALGRVGIGIYGDGI
SESHQLPDKCSVFSAEAAAILQAVSHPYDGSLLVVTDSASALLALASPVSRHPWIQATQIAVAESNNITFTWVPGHCNIT
GNESADHLANFGRTCRLRTRKTPGEDLKKWLKSTVKIAWASEWSQSRDLFIRKVKGVTTPWEDVPNRKDQVVLSRLRTGH
TRVSHSMGGEPEFRKKCLLCNIHNSVEHFICNCPAFDHLRQEYGIGSIRSALQNDRASETALICYLKEAGLYQDI
>I_Ele28_pol#LINE/I 2491-6957  [Aedes aegypti]
SHYPITFTSTFPPADVQNPELNERQQSSSNDSTNHTQTTSSTAEETSGSRGPPSADTTPQPELGDNPRHPNVLAAEDPED
GRERLGPAGADVTPQPEPADNPSLPLRSGRGTDKGGNAYPPEDVEGSKPAMNLRRNPPRRRNPPNRYGFSDINNPKPTAT
EYLSPKLKPLSVLESTNASAYDAMVAIRDEACAPPTAGPSGVFRRPSPLYPYQDLSGHLGGKTPSGKPHPLRRPHRKGTP
PTAGPSGLAHHFVIPDPSQDQLGHLGPQNPSATTVRKSTTLSIQWNMNGFLQNRNDLELLVQEYQPIILALQEIHRVSET
TMDSTIGRKYKWHKTAGTSLYHSVAIGVLADIPAVRLNITTDLPIVGVRLDLPIAVSALSVYLPNGKLPNLRERLQDALD
QIPGPIIMLGDINGHHQSWGDKKTDARGCCVMDLACGNDLVVLNDGSPTFFRGTTETAIDVTLASSEIGHKLLWHVKEDP
HSSDHSPIIVTLTNSTQPETTRRPRWLFEQADWAGFQELVEKELDQYASPSIEDITASIIKAASETIPRTSPNPGRRALH
WWNDTTKAAVKHRRKKLRTFKKIKNKLPPDHPNTVQAKEEYQEARNACRQTIREEKEKSWTKFLDSINDQQSSAELWRRV
NCLRGKRRVKGMCLTVDNVPTRDPQIIAEALGEYFQELSSMGKYPEAFRRKHHCSHSAISNFEIAPDCGQPFNTPFQMAE
LEFALRRAKGKSAGPDELAYPLLKNLPPSGKQGLLRAINSIWTSGTLPADWRHSLVVPIPKGSGPANSTSSYRPIALTSC
ASKVMERMANRRLVEYLESNGLLDDRQHAFRSGRGTGTFLAALGQILDDALSKGDHAELVSLDLAKAYNRAWTPGILEKL
ARWGITGNLLRYLKGFLTERTFQVTVGNSRSNIQSEETGVPQGSVIAVTLFLVAMSGVFEVLPGGVFLVVYADDITLVVT
GAHPKAIRRKAQAAATAVGKWASTTGFEISAAKSTRIHICGINHRPPRKPIKLNGETIPLKRSLRIMGITLDRHLTLKNH
LIGVKHSCKDRLNLLRSISAKRTCSDRATCVRVADAIIGSRLLYGIEMTCRNQDLLTETLAPIHNKAIRTVSGLLPSTPA
DAACAEIGVLPFRHKVALTIANRAIGYLEKTRGNGQACLLSEKANLALSTAANTTLPPVAGLHRLGPRSWSARAPEVDNS
VKNRFKRQSQPEKVRAYFCERLAKRYTNWEIRYTDGSRSAGRVGVGVHGNRHEEQHSLPTECSVFSAEAAAIFQALTAPS
DGSLLIVTDSHSSITAVENPRNKHPFIQGIQMLLDTAPYPRALMWVPGHCGIAGNERADVLAGIGRNSAPLTKKIPADDL
RNWVKDVFWRTWTDEWRSNRELFLRKSKPNTIPGEDLSSRREQIVLSRLRTGHTRVSHDMAARGAGFRRQCELCNTQNTV
EHFLCACPQYRDLRETHEITDIPRSLANDPVNERQVINFLKEAGLFGEI
>Ag-Jen-1_pol#LINE/Jockey 1303-3984 Previously represented by 55240203_Aga_pol, gi|55240203 [Anopheles gambiae]
MDCPDNFNISYWNANGIANKKMDLIYYLSRYDIDAVLIVETFLKPVHAFSIPNYIVYRVDRLSGPKGGVLIAIKCNFRHQ
LLKHNKLGIIETLSVKVLTRLGEFTLIAAYHPGKNTNLVTFQQDIKKLSARNDNYFICGDFNARHKSWNCVSTNAAGKLL
FAEAQKGKFSIHFPDKPTYIPIDPTRNTSTLDLMLTKNLYTISKLRTITALTSDHLPVTFSIKHSSANFVSNKGIYNYKK
ADWNIFKNIINNSIDLTTIHPNDIINATQIDDMLHNLTSLITTAKQSAIPKAIPGKYNIIIPDYIIALIKLRNKYRKKWQ
RHRRNITFRNYYHALKTEIEQQMSLARNRAWSDTLKSINTQQNNTNNLFKFVKIVKNKQHTIQTLKLGNNIFLTATEKCN
ALKTHFENSHYLTYNTNSPMERKVTKNNRIFFARNQNHSLDPGYLVKPKLLMNIIKNLKNKKSAGCDEINNTEIKMLPKK
AVLYLKIIFDSCLKLGYFPSQWKKAKIVAIPKPGKDHSNPGNYRPISLLSCIGKLFEKIIARNIRSHTDINNIIPQSQFG
FQPEKSTTHQIHRLKNYIIENRNRKRSTGLVLLDTEKAFDSIWHDGLLYKLIQYNFPTYIIKIIQSFLSNRKSSVHIGHT
KSNFFKPIAGVPQGSILSPILFNIFISDIPSTNNCTNYLYADDLAIAATARSPSSIIKALNGTLKAYAKFCNRWKLKTNA
NKSEAIFFTRNTSLRKLPSNEVSFMQGNITWKDQVKYLGVHLEKRMTFKTHIEKQLEKVDKLLKILYPFLNRKSKLNLQN
KKLVYTAYIRPILTYAAPAWISCAYSHRKKLQVRQNKILKMIMNLPPWHNTNDLHKRSNLVKMEEFIGNLNVNYANKCRQ
SSISIINQLVEQRI
>Helena_Ds_pol#LINE/Jockey 2030-4753 [Drosophila simulans]
MNPLKILIWNVNGISGKAREVELFAHNNGIDILLLNEIRLNRGNTVKIYGYSFYPAYKPSSHNHGMGGAAVLVRSSLRHF
PQRVIETRTIQMSSVKVSTGLGDMEFSAIYCPPRNRIEERHFSDILVSCGQRYFVGGDWNARHWLWGDTYNSPRGRELAE
AISARGAYILATGSPTRYPHVPSHRPTCIDFAVYHGINLDRTSISENWDLDSDHVALVATLQTEGAYVRPCSRLINSRTD
LLVFRQHLENSLQLNTVLSSKEDIENAVDSLTQNIHRAASASTPSEPEIRPRSYGIVLTREARELIRTKRRLRRRAIRTQ
DPWDRILWNRAAKQLKVVLRELRSDFFEQKLSSMDYTVDANYSLWKCTKALKRQPLRWVPVRCPGGEFAKTEVEQANAFG
FHLEDRFTPYDFATTEQIRETHQYLQMPLQMSWPIKPIRIEEILEIIKLLPKHKAPGIDRICHATLKVLPIKAIIYIALI
FNAILRIQVFPRQWKMAAILMIHKPGKPEDDPESYRPISLLPSLSKLWERLIANRINDIIRQGNILPDHQFGFRKGHGTI
EQVHRLVKHILQAFDDCEYSNAVFIDMQQAFDKVWHVGLLCKIKTLLPAPYFCILKSYLEERQFKITVRNSYSSIYPMRA
GVPQGSVLGPLLYSLYTADIPCPSFEHMAAPNRTLIATYADDIAVVYNSRDSREAANGLQEYINALAAWCKRWNLKINPL
KTTNPCFTLKTLIPNTPPIRLEGVTLNQPLQATYLGITLDKRLTFGPHLKNTVKKCGHRSQQLRWLMNRRSTLSMRCKRA
VYAHCIVPIWLYGIQIWGIAAKSNYNRIQVMQNRALRQITNCPWYVRNSTLHKDLNIHTVESQIGRHTSRYSDRLLSHSS
LLARRLIPARPLRRLKRQGFAKTIGQQ
>G5_DM_pol#LINE/Jockey 1921-4686 [Drosophila fruit fly genus]
CNCSCKLAPSLLLLKMGPLKVAAWNANGASSKTNEILAFIELHEIDILLLSETHFVSRSTFRVPGFTLHTANHPDDSKRG
GAAILIRSLISHLPFSTLSENHIQTAVIQLTASRGTFNIASVYCPPNLRWTEADVELIIAQFGTKFLAAGDWNAKHRWWG
NYRMCTRGRVLFSALAGEGIDIVATGEATCYPFRASATPSAIDFGISKGFRQQEINVQLLTELSSDHLPLLFELDEDAQL
FKGVTKMLSPTANTVAFKEHIEATVDLNIPIDTCNSLEAYVDYLAATIAEAARRATPPPHQARHTTARRAPILSLEAREL
LSHKRRLRRRYIATGDPSIKQLYSSTTNKLHRLLARTRRENLDTLLEGTGPDNNSHFSLWRLTRGIKRQPLFQSPVQSHS
GLWLKTDDEKARAFASHLTSTFMPFNLTDDSNRVAIINFLDTPTAPARPIRHTTPQEVIMQLKALQIKKTPGYDGIDNRA
AKSLPRKGVLALVKIFNAMLRLGHFPRQWKRARIIMIPKAGKPPTKIDAYRPISLLSTFFKIFERILLARLMELPQVVNH
IPRHQFGFRKSHGCPEQIHRLVNQVTHGFEHKLYTVGVFLDVKQAFDRVWHEGLLYKMKALLPAPYYAILRSFISHRTFD
VAVRDARSSLEEIHAGVPQGSVLGPFLYTLYTADLPSPANNTEVSPDQLLLATYADDTAMLASHPVLQTASNAVQEWLHA
VEKWTAKWNVAINSSKSACVTFTLRPGTCTDLTFDGNPINNVTSHCYLGVHLDRRLTWRAHITSVKFKSLAKLKKLDWLF
HSSKLQMSSKALLIKAILAPTWSYAIQVWGTAAKSQLNRLRVVQSRAARHASGLPWYVTNQVIERDLKVTPLGDQINFHS
SRYADRLMVHPNRLANILANPISLRRLKRVHPTDLPTRRIV
>Ingi-2_BF_pol#LINE/Jockey 1-2847 fragment [Branchiostoma floridae]
ADILCIQETHKEAVPYKIPGMDLAIYHPSPVHGSAVYVRDKSIIVKTKDLSAHGIEILMVETLDTKVFSVYKPPPTAFVW
PQECDLTGKACLVLGDFNSHSTRWGYQDTNPDGEAVEEWASNNDLSLLHKAKDKPSFISGRWRRGYNPDLVFVPSRLTQN
FEKTVENPIPRSQHRPITVNTKPVIRPVKPRNPIPRFNFRKANWESFTMELDDRIQTLEPHPNIYDQFQSLVWEISKRHI
PRGCRKSYIPCLSEDSKDLYEEYVKAYEVDPFAEETIAMGESVLASVSEERRERWKELITNVDMTQNSKKAWSTIKKLNS
DKNPQASLAAVTPNEVATQLLLNGKPLNKERGHRKKMKEEMENVMLESEDEFADFTISELEDAIKLLKPGKAAGLDGITT
EVIRNFGPKAKAWLLQMFNTCATTLSIPKVWRKAKVVALLKPNKDPSNAKSYRPVSLLCILFKLYERMILARIGPIIDEL
LSPDQAGFRPGRSCCGQVLNITQHIEDGFETGKVTGAVFVDLTAAYDTVNHRLLLLKLAKMVRNTSTVRIIQSLLENRRF
FVEMDGKRSRWRSQTNGLPQGSVLAPTLFNVYTNDLPQFNNIRRFIYADDLGLTTQHKSFEVIERRLTAALNSLSVYYKN
NFLNANPSKTQVCAFHLNNHQAKRQLNIVWNGKKLANEKFPVYLGVTMDRTLSYREHVRKLKEKVASRNNLLNNLTTLNW
GADANTLRSTALALCYSTAEYCSPAWERSCHASKVDAELNTSCRIITGALRPTPLPALYRLAGIAPPPIRREALSRTQKF
VQEQDSRHPLHYYHDVRRRLKSRKSFMTIQSLNPKEAAKYRVDRWKASDTLLPNEALQTPCESLPHGTHLPRREWVDLNR
ARSGVGRTRDNLLKWGRVNSAECRCGHPTQTMGHITKDCVLGPSISNQDLLEANEKAVAWLQYWHGTL
>Jockey-1_DEu_gag#LINE/Jockey 195-1928  [Drosophila eugracilis]
MPATKPITSAPGKQTTQSRERQQQQQDERRLSVARNNAYFSYVSPEPKSSAMSLTATEDVRSLSPRLLTPSSVAVTQSWS
SQCPSPLSPIDALPAVWAISSTVSSVTTVSANTTTTASTMSSALQPILSSQAEPTTTTATAFTSVTKATKTTTNQDQNKT
QQAGSAIQTGLDRYIHIKRKLSPQNNAVCNKSKINRVQTENKIPGNSNSNRFALLAVNEPERAQETQPKPKPPPIYIREK
ITNALVNKIVALTGDGNFHVVPVTKGDIHETKLQTKSEEQYRAVSKYLEEARKSYYTYQLKSSKGLQVVIKGIEPDVTAK
EVIDALKDKGFSAKNVSNIVNRKKEPQPLFRVELEPDSKVMKKNEVHPIYNLKYLLHRRITVEEPHKRNGPVQCTNCQEY
GHTRAYCSLRTVCVACGDFHNSANCPANKEDPKKKKCVNCQGNHTANYRGCPIYKEIKDRMRKVTATRHQNTLNVYNYPR
TTPEVFSDTAARSSLGQLNTQKGCSYADALRSGTENPLQPNLENAQQTQLQSQGTLESMMITMQQSMMEFMSFMKTTMQT
LVHNQNMVLQLLVAKQSK
>Ingi-4_SPur_pol#LINE/Jockey 175-3086 via tfasty with Ingi-1_SPur, 1 frameshift. [Strongylocentrotus purpuratus]
MKMPNRAASQSNSAEGPLSRPALTVLSWNAEGISDAKEEVLAHMCKQMNCDVLCLQETHRGSDNPRPKIKGMKLAIERPH
RQYGSAIFMNEKIRPDSTSYTHNNDIEVLNVTIKGLTISSIYKPPNISFSYPSTTTNRHIVIGDYNSHSTQWGYDTTGDD
GALVETWAQNNDLKLIHDPKLPKSFASARWKRRYNPDLVFCSRLLAPTSRKFVAEPIPRSQHRPIGIQLTAVITPNKTPF
KRRFNFAKADWPAFTEHLDHALTHLPADPKNYESFIDIVKKVSRTHIPRGCRTTYIPGIDEESSQLLANYTTAYDTDAFS
EDTINLGEELISRISQRHRQMWQHMIETTDLRHSSRKAWATIRKLGIDSTRAQQHYNVTADEVANQLLKNGKAPKTTNSH
RHKLPGVDQNMSLFTRPISEEELQKGISTLHVNKAAGIDDIRSEQIKHMGSVAQKWLLDMFNNCIENTCVPKQWLRTKVV
AILKPGKDSNEAKNFRPISLLCQTYKLLERLILNRIGPHVDSQLNCEQAGFRPGKSTTGQLLNLTQHIEDGFQNNLITGA
VFVDLSAAYDTVNHRRLQTKLHDITNDLKLTRFIQKMMQNRRFFVELDGQKSRWRKQKNGLPQGGVLAPTLYNIYTADIP
STENTRNFIYADDTCITAQHSTFEAVELHLNTALASLSEYYRANYLRANPSKTQVCVFHLKNREAKRELKLKWNNVQLNH
CEHPVYLGVKLDRTLSFKKHIEKTIGKVESRNAIIGKLASSHYGADPKTVQSAAVALCMSSAEYACPVWSRSAHVKKLDT
TLNNTYRKITGCLKPTKVEEIYHLAGIGSPNQRRTNTCLKERMKQATDDRHMLHGYLQPHKRLISRHSFLDSVPPPEQNP
PPSAKPVLIKGYNLKWPEWQCLNRMRTRMGRCKVNMARWGYAHEGDTLCDCGETQTMDHLLQCGGTGCTDEDLSLVNETA
IAAIERWKNLI
>G5_DM_gag#LINE/Jockey 393-1979 [Drosophila fruit fly genus]
AFFFLKMDNGPQQKSIDYESMMLIAGAGPKEIREQMKKSWKSETPASATTGISNTYCSSTFTLTSTSSTISSAYIFTSSL
SGNICSTAASTIHKSASVSSIAKPQLATGWHDVSFKSRNGGIKKRAGAVFSPKMAKKVATDMPAKISANCFQVLSDDEDM
VVGEASSSDDDEPCSSNTALKRAARKAGPKQQLKGAHQTVPAAPKSSRHSKVPRMMFPNVVNFTAFRSELDALVGDSYTI
KVLNSGDCAVQCNSPDSYRLVARHFLDKGSLFHHHQLPEDRPYKIVMRNIHHGVPSEDIIATLQNEGHNVVRIYTPRNKA
TSLPLNMRFIDLKKAENNNQIKGISVVCRHRVIWEKPRKQSEPIQCHRCQGYGHTKAYCSRHYICRECGENHPTAECKLE
QDEARFCFHCGGPHAANFKGCKKYLLEASNRKNQRKVNEPSGSGPARGPHQPCPPAHMSGKPSFANFVRGSQPVAKPAVI
VPHASANLESKLEQLFIRLDRMMSLVETLMQLLLQTRTFPSAAQNGSS
>BMC1_gag#LINE/Jockey 274-1959 [Bombyx mori]
SPGVAPPGHVIVTMDSTIDLFAEFLRLRYPTLSVEFLEFKANHVANSEAVSVAPAAPVSPILASKAPASIAAVSVPALHS
SAAHVASTRSSAASVAPAPSSAPERLSMASVATVNPAPSKTPACGSPAPSSSSDSESNMEVDPSPAPSTDGFTVVQKGKR
RAAEARAPAAAKVSRATNASRLRPPTPVAPPARATPSPRPVEQKKIQTPPPVILQEKAAWERVSLALKAKNINFTNARNL
ANGIQIKVQTPDDHRALSSYLERISFHTYTLQEERELRAVIRGIPKELDAELVKADLLEQGLPVNSVHRMHTGRGREPYN
MVLVALQPTPEGKQIFNIRTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQKTAT
EPPSCVLCQTQGHPANYRGCPRAPKINRRVARQNRLRASHPDTKASAPSVSQAKPAFVPAPVPSGSAWAKPLPYTNTATT
PSSAIRPAPAIRPSPANCPPTASDNLALAIDFFQSINFERVNALGDAIRAASTAQHFIAVVQEYADVYASLNTYVLPSLR
R
>Ag-Outcast-2_pol#LINE/Jockey 1570-4845 [Anopheles gambiae]
MNNLNILQANVQSFRKNKDEIEHIIKMEKINIACIQETWIKGKDNTKISGYNIITENREDGYGGSAIIIKKGMKFKQIKI
GNRIKNIQIVAIEVIESSINIISIYMSPKTTIQEITEITQQINSIFNRRTVIMGDFNCHHTFWGDKKIDNKGTKLIEEFD
YTNFLILKNEKNTCISEDPNKRDTSIDLTIITQDLFTRIEKNIIEQHIGSSKHRIIKACIKEKTKKQQRTQLNKGKVIKN
LQNLKIDKISTINQITKKIETIIKQNITKVNYEPKSWWNKDIKTALKNRNTARKIYNNTKNIKDAIEYKKNEAVLKRKIK
LSKKEFYKNSIEKINKNTTTKELWRLVKKLDGKEESIREENIIHNNEESARELLRKTYGKNEKIDIESINIPEFINENKL
IEEEEWEKILNKKKKSAPGVDKITYEMLKNIHPGTSKIIRDEINEMWEKGKIKKELKRIKTIAIQKPNRDKTKVENYRFI
SLINTIMKVGNSAALKKINKHCTINKILPDRSFGFRKNKSTQMCANYLLNWIQKKKKQKRKIGIIFADLENAYNNVKLKI
LIEELVKTNMNSQIITWISQFLKNRTIELECNKKIIKKLVSDGLPQGDVMSPTLFNIYTRKIHSRINKIPKIRLIQYADD
FAIVAADKNITLLNRTLQRGIIEFQRAISELKLEMNIKKTKMMIMGKTKQKVRLKINNIEIENVTAYKYLGITIDKQLNF
KKHIEDIKNKARDRLYVFKVLCGKNRGLGTDKARNIYRATIRSILENASSITKNAKINTRKKISTIANTALRKISGCTKT
TPINSLHAINAEIPLEIRCKYIANKEMTKAYTVSPIIREQLLNAVRNNTNKKTLTAQQQLFKENRSTIQNIAISKINDIE
HNVSINTSIKNKIEEKKNRNNQVTKQIVLENINEQMKKRNNIFTDGSKQQEKNGIGIYIQKGQENWYHSIKANNDACIAS
IELTAIEIAMKMAEELKMERPTIYTDSLTSCDILKKAKDEEEIEETIYNIIEIGNRLKAKIWWIPAHVGIHGNECADRLA
KEGTISNITTENKIRLVDAYERYKIEMIKKQKSGTRNNVKQRSKIPGISKKT
>BMC1_pol#LINE/Jockey 1960-4845 [Bombyx mori]
SMAYKSRLKPLSVTIGFFNAYGLANQRDQVCDFLRDHQIDIFLVQETLLKPARRDPKIANYNMVRNDRRTARGGGTVIYY
RRALHCIPLDPPALVNIEASVCRISLTGHAPIVIASVYLPPEKIVLSSDIEALLSMGSSVILAGDLNCKHIRWNSHTTTP
NGRRLDALVDDLAFDIIAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRSPDSVPVTRT
VVDWHTLGISLAESDPPSLPFSPDSTPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLPDDIGELLRAKNASI
RAYDRYPTVENRIRMRALQRGVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDE
KAELLADTLQTQCTPSIQSADPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPI
QLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNNPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQF
GFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRV
EGTRSSPRPLTAGVPQGSVLSPLLFSLFINDIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRID
INPAKSTAVLFQRGNSPLISSRIRRRNITPPITLFGLPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPMI
CKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKHMKSV
SERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITLALDTFSSNTRSRLRSPGNRTRRTRQRGRRA
A
>FW2_DM_pol#LINE/Jockey 1256-3835 [Drosophila fruit fly genus]
MAPLRITLWNANGVSRHKLEMAQFLQDKHIDVMLLSETHLTNKYKFQINGYIFYGTNHPDGKAHGGTGVLIRNRIKHTFR
NDFGTNYLQATSLNIQLGNGQITLAAVYWPPRFTISENQFLDFFNTLGDRFIAAGDYNAKHTHWGSRLVTAKGKLLYKTI
IKVSNKLSCASPGTPTYWPTDPRKIPDLIDFAVTRNISHNHINAESLPDLSSLAGLINYLQYADLKNSPCRVTSNRTNWL
KYKKFVSSHIQCLNPRKKQTVQYMQRKPNVQIEQLVLKKRRLRREWQSYRSPFAKQGLNNATHTIRKEVINEQECAQRPY
IAQLSPFSTKYPLWGLHPSVSPPVESVVPIRNSAGEWVRSDKHRASTFAEHLQNVFQPKPATNNFVLQEQTVVSQTTQNT
IEFRPTEIAKIIKELKPNKSPGSDLINPKMIIELPFCAVQTICQLFNAINRIGHFPSLWKKSIIIMIPKPGKDHTVPSSY
RPVSLLPCMSKLFEKCLLTFIIPYLRTFNKIPEHQFGFQEKHGTIEZVNRITTEIRTAFEKREYCTAIFLDVAQAFDRVW
LDGLMHKIMSTLPECTHKLLKSYLHNRVFSVRCGTVTSEDHIIEAGVPQGSVLGPTLYLLYTADIPTSRQLTISTFADDT
AILSRSKCPRQATAQLALYLAHIEKWLSDWRIKVNEQKCKHVTFTLNRQDCPSLILNNTVIPKSNEVTYLGIHLDRRLTW
RRHIEAKRTHLKLKANSLHWLLSIRSPLRLEYKVLLYNSVLKPTWTYGSQLWGNASNSSVEIIQRAQSKILRTITGAPWY
VRSDNLHRDLFILPVRDEIAKQMEKYRNKLRAHPNRLARDLTRLSSRTRLRRNDMPTQR
>DOC4_DM_gag#LINE/Jockey 193-1746 [Drosophila fruit fly genus]
MPQPTTNYTQTPLTIVAKPPLLSLAAVTTSTVASLTTAIASTTTLTATVSSTQTIQSTTSRAFALQAKQLTATITDLRES
KSNPSGRPNSVMQTGMDRYVFVKRKRSPQRTTGNRAKINCGSETKTTTTNNKNMFALLAENASEEANKTTDSVSQKPKPP
PIYIQEITTNALANKIVQLIANNNFHVIPLRRGKIQETKLQVKTEDQFHAVSKFLNENGKKYYTYQLKSSKGLQVVLKGI
EPDVTPNEVANALHEKGFNVKSVINILNKDKKPQPLFKVELDPTSQTLKRNEVHPIYNLQFLLHRKITVEEPHKRNGPVQ
CSNCQEYGHTKTYCTLPSVCVACGDLHESGTCPANKLDPNSKKCGNCGENHTANYRGCPVYKDLKSRMNKRIASARSTNN
TQKIWYPKNVWYPPNRFLTFSSPTPNCHPLPPVSTIPGVSFASALKSGTEGPASTTEFSKAPQPRAVPDDLQQPTSAIEK
IMLSFQATMTEFMSFMRTTMQDLTCALVQVLASQHSK
>L1-8_CR_pol#LINE/L1 1-1300 via tfasty with L1-7_CR, 1 frameshift. [Chlamydomonas reinhardtii]
TPPPAPGDWCWAAPLWGNPLLPEGDHTRRPGLEAHHTRLAACRHLRTVGDLVQALTAAAAWRATRPVGATGGVAWEEWVR
QHLDPETQLREQPALEGLNSLAADIPETWLAAARAVQERLQAGLGPAPPSESAVVRLIMPCLGWRIPGMQQPLALEKLSV
RVATVMQLGDVGVARSQLHTAYAAEARETPPAAPPHTTLDSPLRRLWRIRWENAHKETAWRVSIDGIGIAGNTHLTHAPG
PVPCGCGVTPTHSPRLHAFWQCAVAQAVVQQLAAQLAAPPTREQVWLFEAPTGVQQAVWDVVAMAALAAMERGRCALYAA
RRRGLANAATAPLPQQPLQQGQLPQQQPQQQPQQQQQQQQAQIQTDTQQAIDTAVIDLWGRLKAFTALGVPRKGWDQVGA
QHPFLRVVNGQLRCHTGMNAEQPAQAITDSDED
>L1-7_STu_pol#LINE/L1 1767-5399  [Solanum tuberosum]
MKVKILSWNVRGLNDINKRSTIKSLIRKWNPDVICLQETKLEEWSSLITGQLWGNRWASWAELKANGTRGGIIILWDKRN
WVNISTHQGIYTASCMLESVQENFRWCFTGVYGPHTNIEREDLWYELAAIRGLWDDSWVIGGDFNVCRFESERYNCIRRS
KAMXSFNDTISDLGLMDLPLQGALYTWTRGDDPIQASRIDRFLISPEWNDCFNSINQLALPSVVSDHRPILLKCGDWESN
PSYFKFENMWLEXEGFLEKVKIWWQSYSVNGTPDFILYQKLRYLKKDISNWNREVFGKIDTNRNRALEELAAIEHASENR
AQTPEEKSKVLCLKLGLQKLAKIEEVSWRQKSRCLWLKEGDRNTKYFQKVANGRRRNNTIDKLKIGEXIVDDKVVIKEEI
LSFYQQLYTENEPWRPTVSFENMASISVDERDWLERNFEEEEIHATIKACAPDKAPGPDRFTMAFFQKAWEVIKYEVIGA
LNHFHHNCHMVKSYNASFIXLIPKKKGSIELKDYRPISLIGSVYKLTAKILAERLKSVIGKLVSGYQNAFVKGRQISDAV
LIANEVLDWKQKSGDAGLLFKLDIEKAFDKLNWAYLFTILRRMGFGNRWIRWIKYSLTTVKYSVLINRGPVGFFSPQKGL
RQGDPLSPFLFILAMEGLSKMFQKACQLQWIEGFKVGSPTGNNVTVSHLLYADDTLLFCGADRSQVIKLNLILHIFEAVS
GLHTNMSKSTIYPVNSVQNLVELAGIMCCNIGSFPTTYLGLPLGANFKANEIWSGIIEKFEKRLATWQMQYLSFGGRVTL
INSVMDSIPTYHMSLFPIPAKVLEKLDRMRRNFLWEGNSKDHKFHLVKWAKVTQPKSQGGLGIKDLAAHNKSMMMKWLWR
YGTEDIGLWKEVIKAKHGELTHWSTNVSADAYGVGLWKSISKLWPDFAGNVTFRVGNGSHIKFWKDIWLGDTTLGEEFPS
LHLIAAEPNSTIASNRSDDIWDLRFRRNLNDWELNDIFALFAKLQPCSFSPQEPDRLKWGNSRKGHYTVKEGYHSLCSRN
SMIDKWPWKHIWKTKLPTKVICFSWTALHNSCLTQDNLSKRKFQLANRCYFCHKHTESVNHLLLHCPAASDLWNMFCCFF
GLSWVMPFSVRDALESWSSRDVDKAIKSMSMMIPGVIFWCLWTERNKRCFDGISTSRNLLRGRCLVSLFSWSKLTPVNNL
ELFLDFVSSIA
>L1-8_DR_pol#LINE/L1 1248-5063 [Danio]
MHGTAKYLKIISWNINGSHNPVKRRKWLGYLKSKDVDIALIQETHMMGTEAEKLKRDWVGQVFHNSYNSKRNGVAILVHK
RVNFVMIKQKKDEEGRFIWLEAMVDDQKVNICNIYAPNKEDSVFFHTVNKMIGGQAGNQLIIAGDFNQVQDAYLDRTTYH
KNMPRDRLAIQLMMEDLGLVDIWRLVNPREREYTFFSHNHKSYSRIDYFLVSGDLVESVVDCKIGVIALSDHAPVEMTLD
TNSRTIKQNRWRFNISLLQDLNFSTKLGADLKEFFEINVGTTERLGTVWEASKAYVRGNVIQYASLVKRLNKEKVKDIEA
RIKVLDRQLSLKFTDSILKQVCDLKYQLNDIYNRKAEYAMFRMRTAFYESGEKADKLLARQLKQKDASFLISAIKNEKDE
VVTANMDINKVFEKFYSKLYEAESSPDCTKYRDFFSKITLPTLSSDQLEMLDAPIEESEIGAAIMSMKAAKSPGLDGFPA
EYYKKYIDIVAPILEGVYKETLLLEQMPPTFNDALITLILKKDKDLYDPGSYRPVSLENVDCKILSKVLALRLEGILSNI
VHSDQVGFIKGRSSSDNLRSLLHLIWQSRNENVPVAAFSLDAMKAFDRVEWGYLTYTLQMFGFGPTFLKWVKVLYSAPRA
AVLTNGIISPFFKLKRGTRQGDPLSPLLFTLFLEPLAVAIRNDIRVNGVHLGEREYKCFLYADDILLLLSNPSTSIPAVM
DTIEHFSQISGYKVNWVKSEVMPVSVGCSLADVSAFSFKWIPTGMKYLGIRLSRDLYDVVQMNITRMLQNVSTNFDKWKV
LNLSLWGKVNAIKMMVSSRINYISIMIPLEFPLSIFKQYNQLVKDFLWEGKKPRISMKNMFTTRIKGGLALPNIELYNTA
FEMIKICKHWSGDNVEGISWIEIEKTLTFPFSVIDALSQKSLYSIMNGEVNPILEHSQQVWKKIHKIFNLSHYKQGYSSL
WNNPAIKIGKKTVYWKDWCKKKGLKTVDDLYGQGALYSFQELKDKFNLVDKGDFWKYIQLHSSIRTVGYKPGAEENVLLG
FLNMPKSMQTTSFVYKIAANNMYGKSDHLKIIWEKDLEVEFEEGEWEAVVSGRGGTVRDVRSKLIHYKIINRYYWTPVRL
HRIGLKENNHCWKCGQSVGTFLHLTWSCHLVAPFWTRVIQNLEKWLGQPLPYSPRVCLLGDTSTLQNGISKTQAGLVVAG
YIIAVRLVLRNWKNSDTPSFKDWIELMTSTASYMNVCWQDFRIPPIPLIRNGVAFCNIWRAHKKKIEKLSI
>L1-8_SBi_gag#LINE/L1 73-2241  [Sorghum bicolor]
MVNENQSIQEEGSKVSAGLNEQNDRPQFCPRCGRVGHIASVCPNPVICTRCHLEGHVARVCLTKMPWEFISPFCGFSAYG
QGFHVIESASTEEGIKDMSNVALVTVTSGQADARQIEREFKMKAGPNSTWRWYAKRISEGKYQMRFPNSQNIDDLAHFTE
MRMRSAPDVVIKVDKWNPSTGSKGPLDVAWFRITNIPVEKRSYANVCMVASKVGLPLEVDKDSLTKNDYVRVKIGCRDVT
KVPASVDGVLDFHFYDYFFQREVPQDGYTDVSGTKWIRNERDQAKDDFPSPKKQRMEQAKQAGQGSEAGPSKNYDAGKGK
QMTNVISENVQQQQHCSEGDSEEDSFFTGDLIAPGADHLRFGSFNTLKLGKVTVNEYGSNFMKYKQDSLVTIETKRALFE
NKKSDIFQLEDFGSEKKLSTILEDMGPVMVGRAISMSPVKGSQGGPEGDQSSQEEAQHKVQEGQEQLAVVTEAAGKEVGV
DDNTQDKEQGASGDQISIPKEAGQLMKVDSVDLTNVWEGYSNEGLAVQGKDQEISKDEWPKWQEVRQSKRIRANATFQRK
INDQVISDDHHEVEKEGIIATHSNSFAILSNQRISDLASKMGIHTHSISFEKINMLKDLENARIDMVNKSEGAVDQSKCL
EEENLPLEDQNILDWQSDSSDEEQLTVIDSIRKNKSGRKGKKKXSSNNKKHPLDVSGKLKGDKSKVSPRFNLRDRNTIKK
VVK
>L1-8_GM_gag#LINE/L1 370-2456 via tfasty with L1-3_GM_gag, 1 frameshift. [Glycine max]
YEKEGEWTEVISRRSAKERKKNAENKRTPDNHGTRSKPTEHHPNWRNKDDITSFYFTHFTDEANEVTLWENFKRWGDVRE
VYIAKRRNKDGRRYGFVRFKGVSDVKRLEVQLDNIFIKDQKLFVNIPRFARPIRPTRTQVVQSVITKGGEQNKDVNKGRQ
EGPTPRMRSYAEVTAKGGASGGKAADVASSFVISIPTNENGDYWCNGAWVGKLKTPMAMESMEDRISWDLGYNVRTKFLG
DDMVLLTGLSDDTAQQIISSEMDGGKSIFYSLEKWRPGLRPNNRVIWIQLWGFPIEVWDTDNMRKLVACIGDVIEPDDDT
EDRRRLDRARLLVRTPLPPTINKLVTVRLGNIDHNVWMVEEVGEDGDARYRRNDVNDDWTDEIPSDDGHDGADDDASDTT
FSFSPELSAKKTTHGTNHWSHDITSGLGQGTVTHFSPTGNNTSDDTRREKSEVRGDHNRSQPPLLANVDSAEYSAEKNTG
DEAPEKETSAKAKAGPWQEDGDHSGSILNGEGRPQKVLDLNGESLAAQVATGLHLDKLSTQLQKESGPSTKLGPIGKTEG
CNKNNYPTKAQLAKGSPDMFSKVYARQRNASARAVSLEPVAEEPNLIKEGTGQQHVSGLNDSGPKHDDSEEGQLSINAEE
SNSQAIEQAKQQWCLAKILGVQAADTEQEDGIHSFANMEYRDRKEAMELGNRKILR
>L1-7_Mad_gag#LINE/L1 40-897  [Malus x domestica]
MTAAPNLHSGPRLPIVPWSFLGSDPDVATEKPAPSKQSFAQLLKQPVVSLSQLPIPCEKGGYVSVKISEDAFSKGLDRCK
QSLIGRVLLPKGSTPIQMVDLRNKLETIWGFKAWRLIPLGKGFFSLRFDHVEDMRRVWAVGTLNLNPGLFRISQWSPNFS
PSKQKSTHAQVWIRLYDLGLEYWEPQTLMEIARGVGVPIQLDRVTAFMNFGLYARILVDIDLSKKPPTSLMVERDSGEVL
FVEIIYEKLPDFCSVCGNIGHLPATCRVAARDIKRGHVVEKEGARS
>L1-5_GM_gag#LINE/L1 3-1148  [Glycine max]
MAKRGRGRPPNTVPPPPVNHPQPATNLVVETENHELQKHEETIEEFEATTKXPETLIEEPKEVTDRKLWVDVLNNNRNPS
NGVTMEFVAPKLINGEVEVEIEAEDIASELXFWENAMILYVLGGXLSMXMLKNYMVKMWNFVTLPDMLYHDDGYFLLRFX
NREDRETVMMRGPYTIRNMPIILKEWTPDFNLSKDLEKTMPIWVKLPQLPLCLWGLKSLNKIGSAIGNPLMTDECTAQKL
RVSYARILVEVDITQKLVEEITISDRTGGKIKQIVEYEWKPEFCEKCQKAGHQCGKKKVVKKWIPRNKQADEVKADPLPK
TPVQNTETEGEDKPEGWITVGKAARHTGKAIEVIGTSNVNCSNGFKALEVLNDSLGGLGVVT
>L1-5_EPa_pol#LINE/L1 1272-5280 via tfasty with ATLINE1_10A_pol, 6 frameshifts and 7 stopcodons. [Eutrema parvulum]
IRVQIWNYRGLRQRLTVRRLKELHRLNLPDMMFLIETKQNDKYVMDIGVMLGYDGMQIVSPHGLSGGLVVYWKSYVSVxC
ISYIKFRSFLFYLSCVYGNPIPKLRHHLWEKLQRIAVSRFGSWMMCGDFNEIMNQTEKTRGRIRNAGCFRDFKTMLQVCG
MKDLQSKGNQYNWVGKRRKEVIECCLDxVFANSLWSSNYPLSETEFLDLAESDHRPLLVSIEYEARNKRGQFRNDKRLYD
KDDFIDTVRRSWDARYRSQNNLSNKLVACRREMARWKKNHRYNAERIDTKTTDRYSSKRSxYDNYEINELKKELNKAYSE
EEHCWKCKSRNEWLKAGDRNTRYFHGVTKARRSRNCIKxFQDDHNTFEGMEQLQNxQRNTLQKCSQLRIRAMSILYSPxY
IIKLHTMNTTLVQPVTDEEIERAVFMIGPDKAPGSDGYTATFYQQLWGVISKDVCDMVRRFFNHNELEPQVNHKHLCLLP
KTTDTATISEYRQISLCTVSYKIISKILVLRLKPCLGTIISESQPAFVPGRNIQDNILVAYELLHGLKKKRLRKNYVAIK
NDRSKAYDRVExDFLENVLRKLGFDLKWIRWVMLCVTSVTYFVLVNGSAYGMIQPSCGIRQDDPLSPYLFILCAEVLSQL
VTQAEQCKKFKGMTLARACPTVNHLLFADDSLFFCRAKRTDCEQMALILRNYEVLSGQQVNYNKSSMIYDMRIHDHKRQE
LQQILRIDTIGGGGKYLGLPKQFGRNKTRLFDSVVKRIRDKLGGWYNQFLPPAGKEILIKTVVQAKPIYAMSCFLIPKTI
CDEINSLICEFWWGKDNGKRKIPWVAWKRFSLPKKEGGFGFRDLHKFNIALLAKQAWRVYTQPTCLLARIYRGRYHNTSM
FLESTCKGNVSYGWRSIQAGKSLLLQSLRKQLGNGQETNVFGDNWLPTLPSRRVTSFNSDPNMKVCELWRQDRRKWDEEM
LLATLNMEDTIIAKQIPLSRFFISDIHIWPYTRNSMYSVKSGYWFATHHTKNEETKVPPGSPLLKMQIWKLKIAPKIQHF
LWRAISGALPTTERLRVRGINANSQCHRCCLFAETINHVLFKCQYAKAIWRCAHFHQFDNPSMELETNIGMMIYIYHTKT
FTVQMHLLPFWIIWLIWKSRNEYLFSKRNVHPNEDVDRGLQGVQEWIHVYKDTLSDDLLVTPLPKSSQWELLPMGWLKCN
FDSIHHTNGDSTTVNWIVRNQAGAYILSGCAKLKNVSTPLRAEAIGFLYVVQRVWIQGWRKLWFERDNRELVQVVNSSDA
NTELGNILQDIRYWIAKLPDCSLDFANRERNQAADILSKKTRVVNVLSTFLMYHQFG
>L1-6_Cis_pol#LINE/L1 2184-5717 [Ciona savignyi]
MDGHEIDNQIINSYPLNIATINVNGLKCKINNVNNYIEXNNIDILCXQETHRVDNTTISRLRSLSPYCIFFNTIISNSTQ
HRCNHGTAIYVRNHISNSFTINHTILVENMIHKITLTNRNLQLNIINTYLPCGNLNRNKRSELINLINENIITSQYTHSI
ILGDFNMLLNPLDIKGNFDHRSKPDRRAWRTLEKDKSINDAFRKLNKLEINYSRITNTTATRIDRIYISKNLNSFATRYI
HVRNFFSDHNHCPILSINIENSKKWGPSFYKLNNSLLTNNDLIDKMALFWKNWTYEKRKYSNILNWWDDGKQMLKHITID
YSYGKSKREKQNYXNAVSRLSXLQRQLETVSRNKXISILKHNINXYESSINTGAIIRSKVKFIXNEESPNKNFFDFEKSH
QKKDTIFRVKDNEGNLTSDPKTTLKAIVNFYTDLWGNSPSTINPDNYLRCIDPINFEDELSILTQPINILEIETAINDMR
DNSTPGSDGLTYLLYKKLFPIIKYDLEEVYNNIYLKQTLTNSMKTAIVKLXYKKGDKTDLKNWRPISLLNCDYKILSKII
SNRFDLIINKIISKNQKCGIKGRKINDAMYNIQAAINSAKHFNHPLTAIAIDFEKAFDRTDPEFIIQICLKLNLPRTLIN
WIRIIYNDVNSRIEINGAFTPKIHIKRGIRQGCPLSMVLFLISMEIITRKLHYNNKIIGYRLNNIELKCEQYADDLTILS
GHNSSIPEXFKELEEYAQVSDQKINLVKTKVISNDNLSIYTLRRSYPSIEIAETIKILGIFFAFSRECIDQNWDKYKNHI
INTLRINKRRHLTLNGKKTIINTLILPQXNMVGDILPMNKATLQRINSEIYQFVWHPYKMEMIQRIKLSSSYKHGGLQFP
DIKTKLDALKAARLYRLKHITKITELWHEWARFNLGSTMCSLNKLLYSNSLPNAAFPDPFYRDVRHAYYKLKRCDYNWEN
GKIKDFYNALIAQLTPIHNIELNNKIIPWKYINLQSKAIKPFFSNVDRDIAYKIARNLLPHGDWFRTRNIRPQHGDIIYI
HDCKFCRNKDDNYSHILTTCNVISTVIDAIHKYANKISFKTYNRNDSLILYNKTDLAQKDEILLIKLLTITKCEIYYAKR
KLDIQNKYMWNNDEFVRKILWIVKTKFKLYIRKMIVKYDFEYIYDKFKLLPDFNSYVL
>L1-7_Cis_pol#LINE/L1 1263-4796  [Ciona savignyi]
MEQKNIENEELIIGTININGIKNKAQIISNYMNQNRIDILCMQELHILDPNYTDKIEXLTNSKFYVNTVSKMNVEXKHFR
KGTGILIKKHILSKYTVCHKIIISNIVNKVTLYERNNTINIYNIYFKSGANWYDLVERKNQMEILNNYINNTINNQNIIM
GDFNLVLNATDKQGKFDSKKNLDRKKWLEIENEYGLTDIHYKFKRREIIFTRIVPKKSSRLDRIYANEYALKNISNIKYI
RNFISDHNNCPVINLKVISNKKWGPSFYKINNSVIGNNEVIDTINIRWNHWRQEKRNYNRIEDWWEMGKTMIKNEVQYHS
QIIRKGEKQRYINSVEKLEQLEKNKHILTQNINIIRIQRNVHAYEIKLNRGALIRSKIKEIEREVRPTGDFFQFENVRQK
RDTIYKVKLNNNNVTNNPSETLNEVYNFYNNLWGVIPNTNEQEEYLSDIKPLKINKDDVRILKKPIDIKEIKIAIEELNK
NSSPGIDGLTAKLYKQMDTIFLNDLCELYNNFYFTGKMPNSMRTAIVKLIFKKGDKLDLKNWRPISLLTTDYKIFSKIIN
NRLKIILDCIISQNQKCGIKNRYIDQSIYNIQSAIDSAKYTNKKLTLMTIDYEKAFDRIDHHFIIKILQKLQIPTELINL
IKILYNGIKSKIEINGAFTKPIIVKRGIRQGCPTSMSLFLIGVDILTKKINNNKLITGYRLGPIEYKLEQYADDVTFLIG
DYKSLPQIKNELKKYEMASGQIINNDKTQYMTNDPEVKEHIHKLNMGNNIVTIIKILGIFFSFEQNCENQNWEKSKNSIK
RAIGIHQQRNLTLSGKCTLINSLIVPQFLHPGKHIPINNKYIKEINNLIFKFLWFPSKLEKIKRLKLLNSIKDGGRAIPD
IETKIVAAKLIRLHELTQINKIENLWQEWARHQLGSTIKSVNSKLYSNSSPNATFPNKLYRIIRHNYYKLKQDDYVFDNA
KMKPIYNILIKPKLLNNVIKINDSIIPWDKINLNSGKMKFFFNNKERDNNYKIANKAFFYGDFFKKHNYNIMYKNKIIIR
RCKFCRGPNDNIIHLLTSCPTIRSIFNNLIYNYNNKISYHKTKLTNQLILYNCSDDEQKLQRGAIKLLTLAKIEVINYKK
YLDLKNAYIWNNSEFNRKILWIVKNKFNIYLRQLCIAENFEFVKZKFKLINEFNIVXN
>L1-6_STu_pol#LINE/L1 1926-5540  [Solanum tuberosum]
MMNVSIISWNVRGLNCRDKRRMINSVIQEWRADVICLQETKLEGNSGEEIKQVWGKRGVKYGELQASGTRGGILMMWDNN
VWEGEVVEIGSYTLTCSFKSRVNGFTWHMTGVYAPTCNLERQEVWWEIGAVRSLFTGPWVLGGDFNIVRYASEKRNCSRT
SVYMNDFSDVIEDMELIDPPLEGGNYTWARGSNLEAVSRIDRIMYSSEWGESFCNVKQELLPRVCSDHAPIALKSGRWSH
TKSYFKFEGWWLETEGFYERIKDWWTSFEFEGRPDFILASKLKAMKTKLKDWSVSTYGNLEKRKKEMLNRVHEFDNIQQS
RHLTEEETLQKASVVKEFEEYAKKEEIAWRQRSRTLWIKQGDKNTKFFQRMANAHKRFNHIDKLVDPIDIKTEIISFYRK
LYKENENWRPSFNMNQCPSISFEEQQELQKPFEEEEVLLGLKACAVDKAPGPDGYTMGFFVNCWEIVKGDLMSTMQNFHS
QEFFEKSFNATYIALIPKKSGAKELRDFRPISLIGSVYKLIAKILTERLKKVMHKLVDTQQMAFLRGRQITDAILIANEC
LDSRVKEKSPGVMCKLDIEKAYDHVSWSFLLEIMQRMGFGLKWIRWIKFCISTVKFSILINGSPEGFFSSDRGLRQGDPL
SPFLFIIVMEGLNNMLKTAHTKGWIRGFNVANEGNLRLEVTHLQYADDTLIFCDAEESQLKILRVILILFEATSGLHINW
RKSLIFPINEVNRMQHLTEILGGEIGKLPTVYLGMPLGAKSKSNEIWNGVLERCERRLSRWKAQYLSRGGRLTLINSVLD
ALPTYLMSVFPLPPKVEERIDALRRNFLWNGEKEYKGFHLVKWKTVILSKKQGGLGIRNLKKQNKSLMMKWLWRFPKEEQ
ALWVRVIQAKYEKIDHWKTKEVTSAYGISLWRSIRNLWHCFFQRTRFNINNGRKILFWDDNWLGNGSLKQRRFPDIYLLN
QQHEATVQEVWSIHGWNLTYRRMIQDWEVDRLAEFYGTLDHFGGLKEGEDTLTWIHHSKGIFTVSSAYKNLNQMGTQLRF
LPWKLIWKVKIPYKVAVFTWLVVKEAVLTQENLMKRGIHMCPRCFFCELQAETINHLFLHCKVVRQLWHLFTSFRGTNWT
MPQRASQAIESWNXEGSGSTDQSRWRIVPAVIWWTIWKERNMRCFESISSPLHRIKMNCIITFCYWCSSEYVDDPIAVXD
ILGPL
>L1-9_CPa_pol#LINE/L1 1-2125 via tfasty with L1-3_STu_pol, 1 frameshift. Fragment. [Carica papaya]
RGANEFRDFRPISLVGCMYKLIVKVLAKRLSRVLGEVIGECQHAFVEGRQILEAVMAANEVVDDLFANKRDGLVCKLDME
KAYDHVSWNFIDYMLGRMGFGSKWRGWMKTCISTTSFAVIVNGGPSEFFSASCGLRQGDPLSPLLFIIAMEALNGLLCRA
KGLDLLKGVKVGKRLNVLDVTHLFFADDTLIFCHPDIRNLLHLRCILHCFQAVSGLKINLLKSELARTGGEGDGSNYAKV
LGCKSVRFPLKYLGVPLGAKFKDKCTWEPVIELFENRLAGWKRNFLSKGGRLTLIKSTLANLPIYYLSTLTIPKEIAKKL
ETIQRNFLWGDDEGHRKYHLVSWEEIKKPVLRGGLGIRSLVYMNMALQGKWLWKFLTEEDKMWRKIVFVRWGGPDSAGAG
AGYRPHGRGLWKNIMKQWPRFLSCTKWQLGKGDKIRFWQDRWAGEDRLQNLFPRIFEIAYSKGLAVADAYRLCNGCVDWS
VRVNRHLNDWEIKEYEELLMTLEKQCIQEEPDKILWNLEKRGNFSVQSYYSFLVGGEEDGSLELPIKQIWKTKVPPRMAF
FAWEACREKILTFDNLRARGQVIVNRCSLCMCAEESCNHLLLWCPVAHSLWSIIYELLGISWVISGTVRGEIWAWDGLIN
KCNVANLIPLTVFWVIWKERNARVFDGKELGLYKLRDRWINYFGSSLLGHDIVRDEDFGDIIDILTTL
>L1-17_DR_pol#LINE/L1 1612-5397 [Danio rerio]
MDKYKIISLNVRGLNSPNKRAKLLIYLRRKRVDIALIQETHLKNSDVQRLQNKFYKLAAFSTDNTKTKGTIVLISRICNI
KIDRQSQDQSGRLAYVCTNIRGKKIAFVSIYAPTIFEATFFLKMANHLISLIDYSLIIGGDMNAVIDPVLDRSSSCNQVQ
LNSSAALKNFVKALNLVDIWRSWNPSSRDYTFFSTRHLTYSRIDYLLCSKDLLSYFDQIMILPAILADHNPLMVDFNCNS
FAERSLRWRFNTSLLLNSQFDVDFKAKLAEFLLFNIGSVEDPIFVWEATKGFIKDFSIAFATNLKKMQNQRIDYLEKECK
SLEYSLKSSFSKLTVNKLQSSKTELNDLLRRKAEFLLHRTRQNYYSNGARPSRLLALRLKQNQAKAYIDVINHPAKGPVR
NTKEINSAFSDYFSKLYISECTLPSHNCASFLHSLILPQLNNEEAEQLGQPITLEELKEALQGAKKGKAPGLDGIPAELF
LKYFDLLGPIFLAAIHEAVNTGAFHPQLNIALISLIPKKGKDHSNCANYRPISLLNTDIKMYARILALRLQRYINKLVHP
DQTGFMPGRLASDNIRRLLHVIHEARDCPTPAAVLSLDAEKAFDRLEWDYLWSVLEVFGLGTNFINMIKVLYRNPTASVI
TNGLHSSPFNLGRGTRQGCPLSPMLFALSLEPLAQLIRQEDICSFSVKSHKQCISLYADDILLFISDLQTSFPLILNVFG
KFSLFSGYKINWDKSSMLPLNSIAKHIKLPYNVPIRNSITYLGIAVQSSLQTIPDANYLQVLSRVEQDLRVWTSMPLSLH
ARIASVKMNILPRINFLSSMIPLPAPKKFWHKLNSMIRKFIWNGKQPRLKFETLQRTKENGGLALPNFELYHRAFQIKCI
HVWLNPLSRVPWRQIEMKLADKYRLQDILFSGLNNKQCIQAFGPIIGNTIVNFKLMEKYIHHSPKWHIHTPIWNNNDLRS
GGAPFLSRKWMQKGIYTLKDISGSNGILSFQELCERYETEPSSLFLYLRLRSAMKAYGVPWGDNLPTHPIITWFDLSFTN
HFTSWIYRKALEGTAKNLAIQRCWETDCQLEEGVTDWERVWQNIFTSSKNPNHQLIHYNFCHRTYWTPLKRHRINASFSP
FCDKCPNQELGSFFHMMWECEKVQRFWNEICVILSKIIEYPVPLNPSVLLLSDDSTLNLTKLQKAVWLAGLTSAKKLLAQ
HWLPPHNLDMYKWLVQLQDIIMLELSTARVNLVQMSTLQIWTLAADKISLFIAQRNDQDPE
>L1-14_CPa_pol#LINE/L1 1694-5326 via tfasty with L1-3_CPa_pol, 2 frameshifts and 1 stopcodon. [Carica papaya]
MMIDKILSWNVRGLNDSKKRTTVRGCLNKWKPSIICLQETKMSSVSDKFIRSIWSPNDIGWHFLPAKESAGGIIIMWRKD
RFQCQNVIPGEITLSCLFSNLSNSETWYFSGVYCRGNNTERTLLATELEMIKSSWGNKGIIGGDFNMVLKRSERSGRSYG
DSSIEDFHSLINNLDLTDLPLNGGKWTWSNMRDQPSFSRIDRFLITSDLMISLPNIYQKLMPRLTSDHFPIMLVSDGIQW
GPIPFRLDNKWITLDSFKALVNDTWKNTQVSGTTSYRIAQKLKKLKTEIKKWSKTTGRQEEEGISDIIDEIDSIDRLEEL
SNLTSDDIDRRNKLKVDLAHRLQMEATSWKQKSREKWLKDGDRNSKYFHMLANHRRRVNFVDELTIDGQLLQNNNDLRNG
ACKYFQKLYTETIGSRPKLDDLMFNRIDMDDCLSLEKGFSEAEIFDCLRDCDGDKAPGPDGFNLKFIxTFWKVVKSDIID
FFNDFHNHDSFVRALNSTFLVMIPKLPNPKNIKDFRPISLIGCIYKLLSKVLAKRLATVLHKVIGESQNAFVFGRQITDA
ILIANEVVDEAIRNNKKGALCKLDMEKAFDHVSWDFIDYMLERLGFGTKWRGWIRTCISTSSFAVMVNGGPSNFFTASRG
LRQGDPLSPLLFIIVMEGLNKLLDKAKELQLLKGITVGQQENQMEITHLFFADDTLIFCQPDIRSLIFLRCVLLCFQAVS
GLKVNLHKSELVVLGISSGDILARFLGCKLSHLPITYLGAPLGAKFKDKSCWDPIIDMFHNRLANWKRRFLSKGGRLTLI
KSTLSNLPIYLLSVLNIPSSVANKLEAIQCNFLWGDGDNNNKKIHLVNWKEIKKPFKEGGLGLRSIDKLNKALLGKWIWR
FWNDNNSLWKSIIMSKWFNGDCNDNSKIKNSSYGSSLWRGIWNLNNLVLHNSRWSIGNGTKIRFWKDIWHDREAFQSRFS
MIYAIARYKDILVKDAVELNQWQVIVSRNLQDWEIEEYEHLLQTLSHIHLTDSNDKLIWQHTKSGNFSVKSLYKTLVGNI
PQEQTKFSANIIWKSGATPRISFFAWEAAKGRILTLDNLMKRGFTIVNRCFLCKNSNETCNHLLLGCPVSHNLWSTILGL
MGLSWVKHKSILDELLAWEGLSCHKKTFRLVPLTIFWVIWKERNNRAFEGKEVDFRIITDNWFHYFGSTILEHNIECFDD
LGSIVDCLIDL
>L1-29_XT_gag#LINE/L1 148-1056  [Xenopus (silurana) tropicalis]
MGLNKAQRQAAEAAAKLERYAREERQDGAEAPLDYPTTSSGPAATPPAEPTMMDLLAEIKNTREACTGLITTKVDEIKTE
LSIFRHDVQKIRERAAAVEQRVSEMEDASRPLPNQIRELQTAVQSWQNKADDLENRLRRNNIRLLGFPERVEGESPENFV
QRWLLDMFGADKLTSTFSVERAHRIPMRPPVPGAPARALIARLLNARDRDKILSMARTKKQLPFENANIAIYPDYSLEIQ
KQCFKFSEIKKKLRSANIDYAMLYPAKLRISMEGKVNFFTNPQEANAWLETQNLPGAPRGDQA
>L1-32_XT_gag#LINE/L1 153-1106  [Xenopus (silurana) tropicalis]
MGRNGNKARGEPANRLEQYLRTPQHGADRAAGPPDLQADISAAAPERSDDEPEPTMSQVLAAINNNAAALNTSMATLSER
VDGIKVDISLMRQDLQNVRERVGEVETRVGTLEDMTRPMSNEVQNLLRELRQTQAHVEDLENRHRRNNIRIVGLPEKEEG
EHPETYVEQFLIKQFGANAFSPQLVVERAHRVPTRPLPPGAPPRPLLAKLLNFRDRDAALAASRRNGPVTVNNSTVSIYP
DFSPSVQKQRATYTAVKKRLRDEQLVYAMLYPARLRVQDGQRTLFFTTPAAADQWLDQRGRRRGPPNSPSHKDPGPSR
>L1-29_XT_pol#LINE/L1 1535-5275 via tfasty with L1-2_XT_pol, 1 stopcodon. [Xenopus (silurana) tropicalis]
MGLSLLSWNVRGLNDPIKRKLVVDYAxKQQADITFLQETHLTGTKQITINKPWWGWRYHAAYSTYSAGVSILIKKSLHFQ
PITVKTDPRGRYIFIHARINASNYVLANIYIPPPYSDDCIQQLLAFITSRPQAQVICAGDFNTVLNPNLDRLSKRSPQPP
HTTTNLLNITTTMGLTEGWRYTHPTALQYSCFSTSHMSLSRIDMVFLSQNLLVGIKECKYLPRGISDHAPLLITWETHGG
GQNKRWALNPVWLDIIDKDEAIATEILEFFQMNQDSASPTIVWDTFKAYIRGILHREITAVKRETTQIEKELAQKVETCE
IEAVSNPTPLNLQNLQTAQTNYATHLAQKAKRKLLFTKASYFEQGERAGKLLAYISKTNCSPPVITELIDQQGLRHTHPT
EIATLLSRYYASIYSSQTSTTPMEINSFLLALNLPRLTEEQKISLEADLTLTELCEAIDMFPTRKAAGPDGLPIEIYKRF
KEVIAPHLLQMFNYAITSGSLPQSLYEASIVLLSKPGKDPTQLDAYRPISLLTTDIKILAKILAQRIAKALPIIISEDQT
GFMANKATALNIRRLYLNLATKHDNCGQRAVAALDITKAFDTVEWEYLWHTLQRFNFGPSLSKWIKLLYHSPKAAIVVNG
SSTNYFPLQRGTRQGCPLSPLLFAIAMEPFAQAIRQATEFTGWKIGNREERIQLYADDTLIYLGDLGPSITTLTNITSRF
ARVSGLVTSLAKSVILPVDPQHLPGNQPNMPFPIVQQFTYLGVVIKLPLSDYYNLNVLPVKNYIQKKIKAWESLLIGPMG
RIHLIKMILLPKLTYALLQAPCVIKKGFFTALDTIFRQLIWAGTRHRLSLDTLIKGKSRGGAAFPNIFLYYIAAQLSHIA
SWVEDTNHQSLYHLHKTLLGAHYTPFQWLLTKGSQPIAYPNQVIMHARQIVQKTLHIMQFKNILPLTPLWNNSYFPNLAK
LGSNPVWERCGISTIGDVWQGGSMVSFDQLNKQLYHLPAHQWLKYMQVKRCLNAQNQGNAILLANHSLTDRIQQSSTKGL
ISNLYQELHAKLHNKPLETLRDKWEGDIGCCNDEEWDQMLESPLLISLNYRDRMIQLYFLHRAYYYPAKLHKLFPGSPSE
CPRCGTQQASFIHMVWECSVLSSYWNEVFDTIDTALGIQLPRSPRVSLFGIGIQEIFTRYQSTFINEALFIAKKLITRKW
KQATPPSPAQWVLEVKRLSNLENLIYCKRGSPKKYHKIWDKWLDWVT
>L1-13_DR_pol#LINE/L1 1617-5429 [Danio rerio]
MANTGDKENTKSSAVRFVSWNVRGLNGPVKRTRIFTHIKKLKTEIAFLQETHLRIEDHNRLRKNWVGQIYHSSFNHRTRG
AAIIIHKKIQFIASETISDPQGRYIIVSGHLFEVPVVLVSVYAPNWDDVNFVKKLFSLLPDLNSFHLILGGDLNCVMDTT
MDRSNPKIVPLLKMSQVFAGYMNQIGCIDPWRFLFPDKKVFSCFSHVHQTYSRIDYFFADKRLIPAIKNIEYSTIIESDH
APVIFDICFSYNYTTRPVWKLNTTLLSDSNFCKFISRAIDNFLINNKSDSISPSLLWETFKAVIRGEIISYSTSRNKERK
QTEEKLIESIQKIDRQYADTPTPELYREKLSLKTKYELLSTEKTERNLFFARARFYEHGDKAGRLLAQQLKSKSASRLIP
KIKNTKQDITVDPQEINNIFYKYYSDLYTSEFPQEDSPMSTFLSNINLPTVKMDQRKNMDEPLQLQEVENSIKAMQSSKT
PGPDGFPIEFYKKFSSQICPLLLNMFNHSFEQTKLPPTLTQAHITVLLKPDKDALYCSSYRPISLLNVDVKILSKLLASR
IENIIPEIISQNQTGFIKGRHSFINIRNLLNVVHSPASEDSPEVIISLDAEKAFDRVEWKYLFAVMHKFEFGSKFISWMR
LLYHQPKAAVLTNKIVSQYFSLSRGTRQGCPLSPLLFILAIEPLSTILKSSQSIRGIKRMGVEYKVSLYADDLLLYITDP
LSCISEIDKILKEFGNFSGYKLNFSKSICFPINNMAXXIADTDLPFCFSKSGFKYLGINITRSYTDLFKANYSPILKKLE
LDFQRWNVIYLSLAGKVNCVKMNVLPRLLYLFQSLPIFLPKSFFQSTNRLLSSFIWGGKKPRIRRDFLERPKGDGGLALP
NLLNYYWAANLQKIIYWLKFPHTEWCEAEAKSCKSTSLPALITMKTPFSPSQYSSSPVVISTLKIYNQFRQALQFQDFSL
ETPICNNHLFPAANLDATFKKWQDLGILTCRDFFIDNIFANFNDMSKKFNLQKSDFFRYLQVRHFVQTQCSVFPQMPAES
GLDLILKTPVHPKGLISKMYNLIMTFXNTTLEKIKMEWIEELGINISEETWDKAVKIINKTSSCARLNLIQMKILYRIHY
SKTKLAKIYPNIDETCDRCNSCKADLTHMFWSCDKLRRFWSSIFEILNSAFNLRIQPNPEMAIFGVTNEDIHLAKEIENA
FAFVTLIARRRILMEWKSPMPPKLSLWLSDVMLFLKTEKIKYFLRGSTKKFFKTWDPLIIHIETNVLLQP
>L1-11_DR_pol#LINE/L1 1362-5096 [Danio rerio]
MSXIXFLSWNVRGLGSQAKRIKVFNHLSKLQADICLLQETHLSEXDQNKIKSSQYHSYSAHYNTKQRGVCILINKKISFV
HNTTITDPEGRFVIINITINNXSLTIGNLYGPNTDDPSFFQXFFSXISNLSNCPXIIAGDFNTVLDPTTDRXNNIXXKXI
WKSTDXIKQFMSDMGLGDSWRLQHPDIKAFSFYSPVHHSYSRIDFFLTSNSILSNISESKIHPIIISDHAPVTLKLNITT
RHKPISRWRFNTSLLQDQDFXSYFKREWACFLEINDSPETSPSLLWETGKAVLRGKIISYSVYKKKKEKEHQAELEQKIK
DLEDININNPTEETQDLLRKYKSQLNKLINTHTQFLIHRLRQEHFHHSNKSGKYLANQIKHNKEKTTISVIKDSAGKPTN
SPEEINQIFQKFYSNLYSPEKNPSQDEIHSFLSNINLPQLNEQQINXLESPLSQQEISNALKLMPNNKSPGPDGFPAEFY
KHFWSILSPLFIRLINESKQNSKLPDTMNTATIALLLKPNKDPTLPSSYRPISLINVDTKIIAKALSHRIEKIMPSIIHP
DQTGFIKGRQSSNNTRRLINLIHHSSINKNKSIIVTLDAEKAFDKVNWKFLFSTLERFGFGESFINWIKILYTSPSATVI
TNGLTSRSFTLHRGTRQGCPLSPSLFTIFIEPLAAAIRQNXYIKGIQTLNIHHKISLYADDILLYLQNPQTSLQETIKLI
DTFSNISEYSINWNKSAILPLNSTSVDVTSQTSQIPLCTNYITYLGINVSARLSELFALNYTPLLKKIDDDLQRWMNLPL
SIMGRISVTKMSILPKINYLFSMIPTQPTHTWFKSLDSIITQFYWKNKTPRIKLTTLQKPKTQGGLEAPHFYNYFLANQL
QNIHKWIKPNSSEYTWQDIEQSICKDINISELPFHSQSIKRHHCFKMPTIEATLTAWWKFHQVTNSPLTPSKYTPIWNNL
DFLANKKPLNFRTWAAKGITQLQHIFINNNLAPFPHIAQTYSIGSNCFLEYLQIKSSIKSKLPNQSINLDLPPQISEFIN
ISPSKKLLSQIYKMISKSDNALVLPTTKWQTDLSINPNAAFWTQICKNTFSMTKNANLQLIQYKVLHRSHLTGQKLFKMG
FTSEICSHCTQNTPDTYLHALWHCTSIKSFWXKVTDSLSNLMGCHIPLCPSLCILGDISTININNTNGQFLLVALTIAKK
TILMNWKSRNTIHISYWKNLLTEYISIEDPLCLKPFPNNTFIST
>L1-10_XT_gag#LINE/L1 205-1110  [Xenopus (silurana) tropicalis]
MGGSKTQKTKSDTASKLEQFARHPPQNGADPKRAHAEPSTSPSPPPPQPEAATQLLLDAITDCRTSLSTKLEEVKTDLSL
LRADLQNMRERVKETENRISTLEETCNPLPSALTRMDTKLKSCMDKLDDYENRQRRNNVRLVGLPERTEGADPVAFAEGW
LKNSFPSAPLSQFYAVERAHRVPGRSPPPGGPPRPFLIRLLNFRDRDAILQAVRQSPDIMVDGKKVSVFPDFSAELQRQR
GTFTAVKRRLREANLKYGMLYPAKLRVQAGDRTLFFQTPQEASDWLDTRGPQSPRASPNRQN
>L1-11_GM_gag#LINE/L1 330-1656 via tfasty with L1-8_GM_gag, 1 frameshift. [Glycine max]
DNHGDWVEVTRKKKTKEVANRGRPEGSSHQRKEKKVTWRDKADVTTFYFSRFPEGMMEKDMWRIFQKWGKVWEVFIPRTK
NKLGHRFGFVRFKEVMDEQRLERQLDNNIFIGGVKVFVNRPKFDRGKVVGTVKKGPLLVVRGILNRCTKMVMWTKLTRWK
TSRDKPRSYAEVVKEPVHGQTNPMNPLVGMPGAEKANHSPVILHSNKANSEWLSKAWVARLKNRGMFERVEEELKWVVED
DVNPCYWVDDWVIFPDMDESKAARLIHQEKENGSTPISELQKWSPEIRPTHRLTWVLLWGLPLTVWEEESMAKVLAEVGE
VVEVDEYVEARRRLDVARILVRTQMEPPFQATIPATIDGAEYVLHVAEDATSLGGSKKLIATHLVPPFPILDPAKHPCNR
GCLHPGAFSGDDFSDGVSDDTLGGTPTTGTLSLRLTLAETTG
>L1-12_XT_gag#LINE/L1 149-1180  [Xenopus (silurana) tropicalis]
MVRKSRRGHATRQTPRRRDMQSQNGAESSAERADSPDPAVTRETAAKKLAQYVRDPLPQRSTRGMSPTPHMPTNKRQETA
SCSPSTSAQTSTAPPTEPTLTEVLSAITTNHTALVGKIDELKTDFAILKHDVQNLRERTGETERRVSDLEDFTAPLPGRL
TTTEKQIAILEAKADDLENRLRRNNIRILGLPERAEGNTAEKFIEQWLTTSFGQAAFSPAFTVERAHRVPGRPPPPGAPP
RPLIARLLNYRDRDTALAEARKAGELIYENQRISIYPDFSSEVRKQRAKYTEAKKQLKLKQIPYAMLFPARLRITDNGRA
HFFTSPEEVIRWLEERPLNSPRRE
>L1-11_Mad_gag#LINE/L1 2-1657  [Malus x domestica]
MAEQVEPGGQAKGKSSRMDGESVSSPIEFGANGVDSSRSGKRSRGIDGPNLDAERDMAALHLEPNVSFKDKLMKSSRRLV
SVAVSDFDFDPDLVDGDVSFSREVKGPIVTFSEKAVTKFGKDWHDALVIKLLGRSHTYNFLLNRLRQKWQLKGGMQLIDI
DHDFYIVKFDLEEDKEFVLTGGPWIIAGQYLTIQKWRPGFVPATEVXTRMAVWVRIXGVPIEYFNVWAMRKIGSVLGKLL
KIDVNTNSQYRGKFARICVEIDVTKPLEAFIQINDRWYNLEYEGMPEICFGCGRYGHKRESCXWSVDPMAEKVDGGENES
NXMNMDEPIVKXAQSSDDVSAIHGXWMQVKPRGRPRKINNGQRGVDXXFNGQGSRFSALNGEDKSLNEGNVGSGTDGEKG
EGSIERKIWGVRKKKEASDRDALADISNCGGKPSTHNLGQLRQPLVRRSSSSSISNVEDQPFKFNVNAFKTDMYYGSNMS
KGTYIFGHQPSNASGSDVELAACDLDPGEEMMNTDHAIPGSIIQRSRSTEDXCSAKSXEXCASHVEXTLMGC
>ATLINE1_2_pol#LINE/L1 1619-5752  [Arabidopsis]
MMDVLFWNCRGANKPLFRRTIRYMLKKNNIDILALFETHAAGDRASRICQKLGFEHTFRVDAVGHSGGVWLLWRASVGVV
TVVASSEQFIHAKIVSETETLHLIVVYAAPSVSRRSGLWGCLKTAIEGVDGPLVIRGDFNMIVRLDERTGGNGRLSLDSL
AFGEWINELMLIDMGFKGSQYTWRRGRLEENFIAKRLDRILCCPQARLRWQEATVTHLPVVASDHAPLYLQLSPAFRGDP
KRRPFRFEAAWLLHDGFKELLQLSWNNSLSTPEALNGLQIRLKKWNREVFGDINQRKDRLTTEIKSVQDLLDVVQTDALL
RKEEELIKELDVVMEQEEVIWFQKSREKWVLDGDRNTKYFHTSTIIRRRRNRVEMLKSDSGVWISDPQELEKLATAYYKR
LYSMEDVDQEVEMLPPGGFARLTEREVAELTKPFSAVEVEASVRSMGKLKAPGPDGYQPIFYQDCWEVVGQSIARFVLDF
FVTGILPEGTNDVLMVLIPKLAKPSKIMQFRPINLCNVLFKTITKTMMRRLQNVMSKLVGPAQSSFIPGRLSTDNILVVQ
EAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLHDTLVSVGLPDCWREWIMKCVAGPSMTLLWNGEKADPFKPARGLRQ
GDPLSPYLFVLCMERLCHQIEISVASKEWKPINLSQGGPKLSHICFADYLILFAEASVAQIRVIRQVLERFCVASGQKVS
LEKSKIFFSDNVSRDLATLISNESGIKATKDLGKYLGMPVLHKRINKDTFGDVVERVASRLAGWRCRFLSLAGRITLTKS
VLSSIPVHTMSTISLPQSILNKLDSISRSFLWGSTMEKRKQHLIAWDRVCLPKQDGGLGIRCSTQMNTALLSKIGWRLLH
DDVSLWSKILRSKYRVGDIHNRAWMVSKGTWSSTWRSVVVGLKEVVFSGLSWVLGDGVDILFWKDRWMSQTPLCEVVTCE
LPANWEAVKVVDVWRDGVGWDLQRLTPYFTEGMKLKLLSLVVDNVTGARDRLSWGGCSNGNSTVKSAYSFLSLDWSSKQQ
MARFFSRIWRVVAHERVRVFIWLAANQVLMTNVERYRRHLCDSSLCSVCKSGEETILHILRDCPAMAGIWTRLLPARRLS
SFFSKSLLEWIYANLGEEIEINGCPWAVTFSQAIWWGWKWRCGNIFGENRKCRDRVRFIKDRALDVWKAHVHKMGVTTRT
AREERLIAWSPPRVGWFKLNTDGASRGNPGLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQ
LEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAFLLPLGFHLFNSTPDNVMS
IVHDDVAGSAYPRNVQV
>6587849_Ath_pol#LINE/L1 gi|6587849|gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase  [Arabidopsis thaliana]
METMNSRDVLVDLHTFLGYDRVYSIEPVGRCGGLAIFWKESVKIDIKFADKNLIDLQVQFGAVNFFLSCVYGDPDFKKRK
IVWERLSIIGVGRRERWCMVGDFNEILHNEEKIGGPKRCESYFKPFKEMHEACGMVELASTGNRFTWAGRRYDLWIQSRL
DRAFGNKEWLKNFPASNQQFLEMRGSDHRPVLLKLMASQDSYKGQFRFDKRLLHKPRVEETILQSWDPLNVVNDLCVSDR
LKKCRGSQIIGGRIGLTNFWISMEVSISLMVLRGEVATAYFSNLFKSSNPSGFSHWFVGFEAKVIDQMNERLIRPVSSEE
IKDAVFSIDPSSAPGSDGMSGLFFQHYWAIVGDHVTREVKMVFQTGVMPTEWNYTHLCLIPKVTHPVLMSDLRPISLCSV
LYKIVSKVLVKRLKPLLSLIVSDTQTAFVAERLISDNILVAHEIVHSLHTMDKFAKEYMAVKTDMSKAYDRVEWCYLRAL
LLALGFHLTWVNWMMMCVSSVTYAVLINDTPFVFQVSNSQKPIIHHLLFADDSLFICKANKDEVVVLQSILGAYGAATGQ
IINLAKSSITFGSKVETVKKAEIQTCLGIFKEGDASTYLGLPECFSGSKIEMLDYIKVRLKSKLSSWFSKSLSQGGKEIM
LKAVAMAMPVFAMSCFKLPKTTCTNLASAMADFWWSANDHQRKIHWLSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWR
LLQFPDCLFARLIKSRYFPVGEFLDSDVGSRPSFGWRSILHGRDLLCRGLVKRVGNGKSIRVWIDYWLDDNGLRAPWIKN
PIINVDLLVSDLIDYEKRDWRLDKLEEQFFPDDVVKIRENRPVVSLDDFWIWKHNKSGDYSVKLGYWLASNQNLGQVAIE
AMMQPSLNDLKTQVWKLQTEPKIKVFLWKVLSGAIPVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPRQVWAMSN
IHVPLLGFECGSVYANLYHFLINRDNLKWPVELRRSFPWIIWRIWKNRNLFFFEGKRFTVLETILKVRKDVEDWFAAQVV
EKERRAEVGQSDQQVFSPRNVSPVVRWLPPPTDWVKCNVGLSWSRRNRLAGVAWVLRNDRGNVLMHSRRAFSNISSFLEA
QFLSIVWAVESMVSHHVNRVVFGVEAAVLVGVINRPQAWPSFRFQSSEILLALNGIAVWKVVLESVSSNRGANLIAQSVT
KECRLQSYVAVSFPAWLLGVFRDERVLTSVD
>ATLINE1_4_pol#LINE/L1 2551-6638  via tfasty with gi|6598399|gb|AAD03, 3 frameshifts.  [Arabidopsis]
MRLISWNCQGVGPKTTSRRLEEMCRMYSPGFLFLSETKNDLVYLQNVQVSLGFDCLKTVEPIGNSGGLALFYSRDYPVKF
IYVCDRLIDIETIIDGNRVFITFVYGDPVVQYRELVWKRLTRIGIVRSEPWFMIGDFNEIIGNHEKRGGKKRSESSFLPF
CCMIENCGMIDFPSTGSLFSWVGKRSCGVAGRKRRDLIKCRLDRAMGNEEWHSIYSHTNVEYLQHRGSDHKPLLASIQNK
PYRPYKHFIFDKRWINKPGFKESVQEGWAFPSRGEGVPFFQKIKNCRQTISIWKKSNKTNTEKLILELHSQLDLAYEDEN
FSTEDLLALKWKLCQAYRDEEIFWKLKSREIWLQLGDMNTKFFHASTSKERARNKILGLLNQDGLWVDNEVGVEHLAENY
FETLFTTSDPQVFDSALQEVPVLITEEMNKSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWDLTGPDLIKLVQ
NFHSTGFFDERLNETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQSAFVAERLITDNILI
AQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILLNGSPKGFIKPSRG
IRQGDPISPFLFILCTEALVAKLKDAEWHGRIQGLQISRASPSTSHLLFADDSLFFCKADPLQGKEIIDILRLYGEASGQ
QLNPDKSSVMFGHEVDNSIRNTIKVSLGIHKDGGMGSYLGLPKQIHGSKTQVFSFVRDRLQKRINGWTSKFLSKGGKEIL
IKSVAQALPTYVMSCFLLPKAIRSKLSSVVANFWWKTREESNGIHWIAWDKLCTPFSDGGLGFRTLEEFNLVLLAKQLWR
LIRFPNSLLSRVLRGRYFRYSDPIQIGKANRPSFGWRSIMAAKPLLLSGLRRTIGSGMLTRVWEDPWIPSFPPRPAKSIL
NIRDTHLYVNDLIDPVTKQWKLGRLQELVDPSDIPLILGIRPSRTYKSDDFSWSFTKSGNYTVKSGYWAARDLSRPTCDL
PFQGPSVSALQAQVWKIKTTRKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSP
IPSSEYIFPRNSLFYNFDFLLSRGKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQEANVWKQANSK
EVATEYPPPQVVPANLPPTRNVCQFDASWHLKDTLSGHGWVLVDQDIVLLLGLKSARKSLSPLHAEVDSLLWAMECMISL
GVSDCSFASDSADFISLLENPSEWPTFVAELATFSSLVCFFPSFSIKFFSRIYNVRADCLSKKARARNSLFSYVSKSVPD
WLS
>ATLINE1_11_gag#LINE/L1 579-1750 (1 frameshift) [Arabidopsis thaliana]
AGVISSKELLNGFKSKARLFTLPSGEACVKIPDSIIEKHKKSWESFILGQFYSDPPAQGTIHTIVNGIWSKQFRVSLXSR
MEGNAFLFCIPNVQTRTRVLSQRLWQIDGQTMFVAKWEPGLTPVKPELTTAPIWLELRHVPFQFFNDNGLEHIASLVGEP
KFLHPSTANKTNLEVARVFTIIDPRKPLPEAVNVHFASGDIRRIEVSSPWMPPVCAHCKEVGHSLRKCKVAPITCKACNS
TLHLADACPRDQPQGVKKRHRRRRSKTPKPVVEEGDWNTVAPRNRRSTRSSVVLTIGPPLSVPDANAAAMAGSSKEAQRP
NPITGKAASFKGKGKSIVVAKSTTVSEADYDSSDVPSDDVDSDLENEEQFTEVLSKRQQRSARGKGPKSH
>ATLINE1_10_gag#LINE/L1 30-1499 [Arabidopsis thaliana]
MSLSKGDSLGDFRRSSFLHRRSFPTRIDHGFDVKIFTGGFNLSKINDSYSLPSFSGSNHQLKPPWPLLYNHRVHPIMFSL
SLFYQFEFKLLSIMSDFLRKSVQDLDLGVDDVPIVLSPEFVSQAASVNRFSLIVTTVNPRKQNLRALIGQMPRVWGLVDS
CVGRIVGNGRVQFKFRNEESMNLVLQRGPWSFNDWMLSVHRWFPNITEGEMKIIPFWVQIQGIPILYLTNAMARVVGSRL
GYVTDVDFDENANQMGFVRVKLAWNFDDHLRFQRNFQFQENENTIIKFRFERLRNFCTKCGSLKHDVKECNLSFEEYVPV
NVNDDNDDDNHDQGHDEDDMAAEDSLPSIDPASLIPGLQGHNAGATSVKQEGSSSSVPSDLASAFEDTELTAERLRYLHA
KHVRETLMDHQREAGLLEEVSDNATIGFPFVKRKRVSFEMLYNQAEAEEESAVLGHIRKRDKKVSLGASVSSPLSMDGGA
GSPVPPQPP
>Vingi-3_Crp_pol#LINE/Jockey 2-1501 via tfasty with Vingi-1_PMa_pol, 2 stopcodons. [Crocodylidae]
TSALYLCFVRVxTSEKMLLAHMPSIFEKVIPVEQAGFHPGCSTCDQVLVLTMYTEARYQCKEITGAAFIDLSAAYDTVWQ
DGLLLKVSRVIRCQQTLHLLSVLLSNRxYRVHLGNTVSRTHLLNNGLPQGSVLAPALFNVYISDLPVTTSQKFGYADDLA
LATQRRTQAEVQTDLCKDLKLLEEYFVCWRLHPNPRKTVVTSFHLNNAHADQKLTITFCGEEVKHEKFPKYLGITLDQSL
TFHEHLRNVAKKMKARVNLVHKLAGTTWGANATMLRMATLALVFSAAEYCSPVWNKSMHTKIVDTQLNAAMWIISGMLKS
MPLPWLPVLVNIAPPQLRRDAACVREYHKAISNPNLPINKDITMPPLDRLKSRKPFWKYAKKLYDDNKSTEEQWREAWAN
TNLPQKYIVSNPTIPQPGFDLLRKIWSSLNRIWTLHGKCGHLLHKWRIKESPGCDCGAIFQMVQHIVNNCPIRSFNGDLK
SIHAATPEAVEWLSNLDINL
>Spock_DMi_pol#LINE/Jockey 1805-4781 via tfasty with I-1_DR_pol, 4 frameshifts and 5 stopcodons. Distant match (50% sim) [Drosophila miranda]
MKILQLNIQSLTHNNNKQLLSMFLDQNAIDIAILSEIWVLNNADCSILDYNFFCMPREDGYGGVGIYVRKNIQFSILKIE
NDLEILGIKTLNLKSNFNIFSIYAPPSTTVSQFKSGTKKFLEFAASLDIPSIVGGDFNARSSIWGSPICDRNGRSIENST
REAGFICLNDGSPTFSRSPSQFSVLDLSFSNYRNGTINWQVLKTKITNSNHFPIVLSVQGLNAPLQGKKILHNRIARILG
ASDFSNLEELNEKVKSLTLKNTVTFPRKNKYVAKKWWNEETEKLFRVRNACRQKFYLTKKLADARATLEADKNLQNHVKN
LRKRNFSKFIEEVSSSPSMWSRVKNIKKYGQIKNVGNKWTNEDDKNFLNMVKVTPSTSNSRPPKKIPAPLxGPDDPEPLE
LEEFLAFLKTRNPNSARGPDGISFRMLQKLPSGKNKTFLKLYNKVWLSGVIPEVWRRIKVVPIPKKNADPTSFQNHRPIC
LINTLFKSIEGLIKLKLDEHIANCDQLPVRSYALRRNRSTALCINDLINKVLALKARGCQVVAACWISSFLNRRILIKGK
SEVEVNRGVSQGSCLSPTLFNLYTAELHDINSHNCLLFQYADDFFIVCFHKDVSIAKGVLEDSIDKFEEKCNRLNLSFNP
VKSKSIYFNNRRAALNISHQGVEIRQVEQIKYLGRTISANNSASGHIDLAISESNRNCAFLSGCHYGISPKRGLIFYKAF
VRSRLEYACSSFCNLSKSALAKIKSHCNHHLRKSLGLIICTLVPIIYHMAGELPPDYRRDSWRRKSWLRCLHLISQQVKQ
CQQIGIxTRATLRHIGSLAAxxIELRFSRTPASFCTKISSDLEFFKGSAPNKHAIDQAGIMLLLGEKKDQLTKGGFEIYY
TDGSVADGHSSAAFLHDRTGFLDSYYTHKTLSSLSAELLAIEKAxDHAILYNFPRVALLTDSRNGALILAKNIQDNSIAY
KIREKIQQNPHLRTVEVHYIPGHATKQTLRTKH
>LDT1_gag#LINE/Jockey 778-2397 [Lymantria dispar]
PTMAEKTITIDALLAIPEIKAYIAQHFGAITILPPQPKPARSTAQPLEPELPAVGTAMETEPVLSSSNSSSSSSSESEDS
SNEGSFIEVRSRKRSKRTKNTKEAPSKTPKIKQTDSATTSAAAPLATTATAAPAPPVVSQAALTAAPPPTDSNTVAPPTV
KKSLAPPPLYIRDKDKWLAISAWLNTNRISYKSAKSTPQGIRVDLHSSADHRSVSKMLGNQQIPYHTYTLPEAKLLRAVI
RNVPREIETKEILESLKTQDLPVVEVHRMIRGRGRYPLNMILVCLTNNAEGKGIFKIKTICGLSGVSVEPPHKNGNLAQC
HKCQLYGQSSKNCFARPRCVKCLGDHHTSQCERPKDISLCKEPPACVLCGEYGHPANYRGCPRAPRRLVRQPNTNGKALY
YNKTFVPAPLPTHNAWARPLLNSKEAFPTLPNRQPAAPPATSQLKPPTTGPNQPTGGNPKPPQGAPIPIVVAKSAPPKAP
QGLDPDLALVANFAAQINFTEIREIAAELRRNEGNNLALLNTAIKFSPTLERLGSLKFK
>TART_DV_pol#LINE/Jockey Both at 144-3992 as well as 8012-12607 Virtual poly Q masked [Drosophila virilis]
MMADTPLTLLVTPQLLQQHICPTLTVHCLTGEGQTLFQMTNHSSDQYGNSFKIAYWNAAGVRNKLNELEVFMNRHKIDIM
MLVELRLGPSALNPGPPITINGYHTYAATRPPPHHRCGGVATLVKHGIKHIALEAIVFESMQSAPVAVTLAKNETIVLAP
IYCPPQYNWSADMFAKLFQHFEKLSGSGFILCGDWNAKHSWWGNQRACRRGVELLRSIHSNKKLNILATGGATHFPYTSR
NRPSAIDIAVYRALTMTGLQTHSTIDLESDHLPIHIGLRVGRFPYKQTTMRLLPINANVKKFQNHLDKNVRLNTEIISGP
DIEDAIDILNKNIYNASLAATHPPRRHQQQQRQGTNTNRMNHGRFKLTNETIRLLAIKRQRKREHMVMRTPLTRSRLSQA
QNKLKKALRMDKKKQTNKMFEQIDATDRYKIQKLWRITNNIKRQPEPNWPLKIQATDNNNSRSNRTQWTKTSKEKAEVFA
AYLEQRFSPIFSNTAEYRLQVNNEINTRQQTNDCDSGAGVAGVIPFRPITYTEVTKEIGCLTIKKAAGIDNIDNRVIKAL
PKKAILYLVMIYNCILRHGHFPRQWKCAAIKTILKPGKPTEDVASYRPISLLAGFSKIFERLLMYRLYECSEFAKAVPLH
QFGFRKDHGTEQQLARVTQFILSAFEKKQYCSAVYIDIREAFDRVWHEGLLLNLARYCLIGCIMVLKSYLLDRTFIVHGN
EGIKSRIGKVSAGVPQGSVLGPILYIIYTSDMPLPHIATPPNPTTTAATITNTETSITNPYNCSMLLSTFADDTVIMSSA
DILQTSYSANQTYLRQFTIWCNRWCIQINDSKSAHVVHTLRNLNSRMNYLTPRLNGQEIPSKPRQKYLGVHLDRKLHMQH
HVTQLRCRLKALYNKLEWLIGNKSVLSVECKITIYKQMIAPIWRYALPIWGAMISDTQLRRIESTQNWILRKIVKASWWT
RNKDIRDTYDIGTVDEIFHTTSKRFADSLAIHPNANARKLIASPYVPIRLDRQRYSLQLQQHVRPLQQLVQQSQEQQQLP
TLLRMELEEEEANSLRMQQQQQQQTPQQQPARFSEMRINSLRRHYREGRITLEELKLAIREQPLVIQQLVLPRELAIQIY
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEGLQHQPNQSPD
VEIVLDTPQQQQEQQLERPLPQPQQANLQQQRLTEDEQQLEHRLERLRQQLEREMDEAANNEPTQQQRTPEQQQSNQQQH
TIALTENKNTNINPSNSVCANITNFSISQSIIIAPYSLINIATDAPWQQNQPTTTQQLRQQHSNLHQQHLQQQREVVEAP
SSNNAQSTVRGAKRRRSSSTSCIEPKRRSPAAPDNQQQRQLHTLLGKRHSGGPAQHNCWPPKRQKLVQQQQQRQACLRRT
RLGTWQLQMPHRLGIWLLLSCFGMQTHHKVPQKLVWAPPADYGQSSTNGRHLQIARRRPWHSWQRLQRRWSNCGRQTHRK
ARPYNILIHET
>Vingi-2_Gav_pol#LINE/Jockey 1-3110 via tfasty with Ingi-1_BF_pol, 2 frameshifts and 2 stopcodons. Vingi-4_Crp_pol near-identical (probably is the same element)[Crocodylidae]
GGHSRSVHVATPVRxYQVIPANSANTPNHDFDPTNxPTITNHKPCDRSRHKPSLGPALTVLSTNLEGFSTVKKELIVNLC
KKVQCDVLCLQEMHRGPHNNHPSIPGMTMAIERPHKQFGSAIFVKTGTVIISTAKTEENNTEILTVELNGITITSVYKPP
HMSFAFTDTPGITQNKPRVITGDFNSHSTQWGYNETNKDGEAVEAWSDAYQLSLIHDPKLPKSFNSGRWKRGYNPDLIFT
SNTIAGLSNKMVLDPIPHSQHRPIGIQIKAAVTPITVPFRRRFNLKKANWKGFSEYLDATVKTVKALPENYDQFIKAVQK
SARKNIPRGCRMNYIPGLTPQTTGLYEDYRRQYELDPFSANTIATGEELMLAITEERRKSWQTLIESTDMTHNSKKAWAT
IRKLSDDPRKVDQHHNVTANQIAHQMLLNGKSPKTKTNKQKNPQTGKVQVPQSLGFTSPFSMTELNAGINALKTGKAAGL
DDILTEQIKQFGPQTREWLLCLYNSCTASQKIPKIWRHAQVVALLKPGKDPSDPKSFRPISLLCHTYKLYERLILNRLAP
YVDKHLIPEQGGFRPGKSTMSQLLNLTQHIEDGFERGQITGAVFVDLTAAYDTVNHRRLLHKTLEMTKDLHLTELIRTLL
ENRLFFVKLDGKRSRWRRQINGLPQGSVLAPLLYNIYTNDQPIDLETKRFIYADDLCITAQNTGFDHVEKSLSEALIGLT
SYYIENQLRANPAKTQVCAFHLKNHEANRQLNITWSGTPLSHCPNPVYLGVTLDRTLSYKEHIMKTKAKVSTRNNILYKL
TNSKWGASPSTIRTTALALSFSSAEYACPVWERSVHAKRLDPILNDSCRCITGCLKPTSLNSVYLLAGIAPPDIRRAVAS
RIERSRQTEDARHPLYDHPAAHKRLKSRRSFLTSTQPLDATPKETRLQMWNERLKKIPDSEKMDIPAAESLPPGADEPWQ
RWRCLNRLRTGVGRSKELMKKWGYTIGSTTCDCGTEPQTMQHLLQCPLLEGTRTMKDLAKYNKRAQACVTKWSNVV
>Vingi-1_Lme_pol#LINE/Jockey 1-2925 via tfasty with Vingi-1_EE_pol, 4 stopcodons. [Latimeria menadoensis]
ICQLNIEGISRSKCEYLERLLKKHSVDVLVLEETHIEHTHLFDTTGRITGFDLIACNNHLKYGLACYVKQGIKDCTELKH
TSIARVFTTAICVGELTITNVYKPLLVQWPDPSLPPSQHPSIHLGDFNSHHTIWGYDDDDYNGVAIVQWASLEDKFLLFD
AKDQGTFHSSRWQREYNPDLCFLSKDSKGNPIIASRTVLNDFPNSQPRPSIINVGIEIPVITSTPEPRWNFKKADWETFQ
KSVDTNIRWIPPTTDAVNRFIEIIKAAAKYCIPQGFRKTYIPCWMEESEALYQEYLLNKNPATVTAMLESLNLARHERWK
SLVEETNFTHSSSKAWALLRQLGGANPTCKHRTTIRVDAIASHLIQSKAPVDKKFxHQITQxLSTNLMAAPRSSTIPDPF
TLNELNAALSATKSGKAAGPDGVYPEFLKALGPKVKRWLTFFFSEILATSKIPSIWREAKIIALLKQGKNACEASSYCPI
SLLCTCYKVLERLLLHRLSPIIEPTIPKEQVGFRSGRNCCDQVVVLTMHIEAGFQCQLKTAVAFVDLSVVYDTVWKHGXL
SKLSTILPCRTMIHLFNSMLSNQCFHVYIGTQKSRYRTLNNGLPQGSVLAPMLFNVYTGDLPETQSHKFVYADDITLAME
NKNLSATEETLTSDLxRMEAYFHRWRLQPNPQKTITLTFHLNNHQANRALNVSFGGTEVNHVKKPSYLGVTLDCTLSYRQ
HLQNLGKKLKSRVNLIQKLTGTTWGADAQTFCTAALALVFSTAEYCSLAWLSSPHVKSIDVQLNSTMRIITGVLLSTPTP
WLPVLANITPSHLHREYAVSREYNCYTSKDMPIQADLNNLPPTHLKSRRPFxTIAETLHRSPLSLNDRWRNAWKNCNIPN
GFLVEDPTVQPEGSNLPRKQWTTINRFRTGHGRCCHLFQKWKIKASPSCDCGAPNQTLEHIIEHYSRRKFTGSLQHIHAV
TPEALAWISDLDIDI
>ATLINE1_12_pol#LINE/L1 388-4509 gi|2583130|gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVEPIGKSGGLALMWKDSVQIKV
LQSDKRLIDALLIWQDKEFYLTCIYGEPVQAERGELWERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEF
RQMLNSCGLWEVNHSGYQFSWYGNRNDELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKWAGF
KYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEKIASCRREISKWKRVSKPSSAVRIQELQFKLDAATKQIPFDRRELAR
LKKELSQEYNNEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASE
DVGYTVEELENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSI
EEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHAL
SSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLS
PYLFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSS
IYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMAL
PTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSL
MAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQY
AANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQ
EVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISP
LPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNNRKEP
QPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSL
SRFNYRRVIFESDSQYLVSLIQNEMDIPSLAPRIQDIRNLLRHFEEVKFQFTRREGNNVADRTARESLSLMNYDPKMYSI
TPDWIKNLVDLETV
>L1-3_GM_gag#LINE/L1 209-2266  [Glycine max]
EDEGEWSTVVRRKVAKENKKASVEERQTPIREARDNSTHHHFDWRNKGDITSYYFTHFPEEANEELLWKHFKRWGDVREV
FIAKRCNKEGRRYGFVRFKGVSDARELEVKLDNIFINDYKLFVNLPRFARTTRTQQLKQKGSLGGKSNEELYKPRVETIT
PPRRTYAEATAKGAAPGVNMRGEAATHTISITPIKDRGYWCKDAWVGRLKKVMAVESIEDRVAWDLGYNICTKFLGDDMI
LLMGLSEEKAHHIIQTEKNNGSSLFYSLERWRPGCRPHNRVVWLQVWGFPIEVWGADHFRKAASFIGDVIELDDDTEDRR
RLDRARLLVRTPLPPSILKEITVRAGELDYQVWFVEETWSGEVVNQKTNSLSDVWSDEVTSEDGGIAGEDDDDIDGASSY
SLELPPPNPESPRNHQVEGESNGHCDEHRLMGKTHSDEDHRDETVIRKEGTQGPFTANVDPGIREAETKAGIALPKESIE
HXSQADSRKKGNHSKGKNLNGGVKAFGDQPPYGVYVEDTLLMEPHTHLHPLQTQSGIGPSDSSGPLWKNEGSNKDGHTSV
AQTPNDKPEKYSKVYRRHRVSHPKAPQLEPVAEEPQXLEGVKDMPITTDIQNQSKTHEQLEAEGKLKSXIVCNNQVLEEA
QQLWXLGTHMGLEVDKCHSDFIQSFADMEARDRNEAMELGERKTHR
>L1-3_CPa_gag#LINE/L1 485-1606 via tfasty with L1-2_CPa_gag, 3 frameshifts and 1 stopcodon. [Carica papaya]
MFELAEVSLVNPYKKKTEKDNINSQPVPKPTEPSALSIGCPICKCSFQIPVAVTEKKSFATVILSSNSGPPLVTTVPPAP
KACSEKLQIQNGSHTRTASAVTESRNQRFLSRGSKKQKKKILNGPFSKTEKLMKPRLFWAEKEKWTEQAGPSKPTWTHPS
PKKKHEKVKWEWRVKKRRPHPPPPAVQTLTPETMSSSFSYCDRQRNGDMAATVITQMSGQQKLSPMTDCxSAWKMRNPPL
SGMELVPVHQESSLPPLQFFKVDNLAEVISSLDRILKGKQSYDIQILSNWILDNMHCISTSLGVSYLDSDNGIQPYFTDL
EEHVIDQCKGRLLTCGNKKKQKEGGSRELKRLQTTINYEGRNNKSKGSGGNSTLS
>L1-3_GM_pol#LINE/L1 2266-5937  [Glycine max]
MNILSYNIRGLGRGIKWASIRKLVGKHKVDVLCLQETKRDSLSKADCQVLWGHPDVAWEWQPAENTAGGLLCIWDNNNFQ
VDFRISEKGFIMLGGTWLAEMQRVVVVNIYAPCDSEGKRQLWQSLSRRKSQIQDECWCLVGDFNCVRNPSERLGSNRSNS
DNGLISEFNDWLAAMEVDDIPCVGKPFTWVRPNGSCKSKLDRVCVSDGWLSKWPDSSQFNLERNYSDHCPIIMHSKCIDW
GPKPFKVYDGWLMNKQFQKVVRECWLDYQPMGWGGYALKCKLQHLKQRLKIWSKDNIGDLCSKVKQLQQKLNXLENSMPA
QPSEQQVKELKKTQADLWEKATMXESIVRQKSRCRWIKEGDSNTSYFHRVINLRRRRNALRGMQIGDTWVENPNIIKAEI
LHHFQNRFNEPHLSRPNLDGVAFKSLTSTQRXIMIEPFKEEEIRCAVWACGNDKSPGPDGFNFRFIKHFWKELKPEFLRF
IAEFHVNASFPKGLNSSFIALIPKIKDPQSFNDFRPISLIGCVYKIIAKLLANRLSKVMNHLIDERQTAFVKGRQLLHGV
LIANEVVEEARRSKRPCMVFKVDFEKAYDSVSWQFLFYMMGRMGFHDRWIGWIKGCLTSASISILVNGSPTSEFKPQRGL
RQGDPLAPLLFVLVAEGLTGMMREASIKNCFQSFLVGKHKIPVNILQFADDTIFFGEASMDNVKAVKAILRSYEMVSGLR
INFAKSHFGAIGQSEEWCCSAADYLNCAMLQFPFCYLGLPIGINPRRKMVWEPIIRKFEARLNKWNQRSISMAGRITLIN
AVLTALPLFYLSFYRAPSAVINRLNAIQRHFLWGGNSEGKKIAWXAWSHVCSSRERGGLGIKDIKALNNALLIKWKWLMF
QQSDQLWSRILNSKYRGWRGLEGGPPKPNFSHWWSDLRSINQHGCMAEVSKQFIWRLGRGDQILFWEDYWMDGGIALKDK
YPELYRISLQKQHTVAEMGSSCESGWEWKFSWRRNLFDNEMGMASDFIDQTAXINLNVLXKDSWVWGAASNGIFSSKSAY
LCIKAEQSSEDHQLGFCQLWDTKIPPRALTFAWRLLWDRLPTKENLSRRXVDLANDLCPFCQSNSESASHLFFTCQKVLP
LWWEFNTWVKEXRALHCRPMDHFLQHSSIAGSKASNTRRRIWWIAATRSIWKLRNDVIFHNQPFHISKLVDNTNFLTWSW
LRGWEKDFNAPFHQWSSAMPMAFT
>L1-4_VC_pol#LINE/L1 1737-5999  [Volvox carteri]
MGRRTRCRRPNNRPLRIASHNVAGLFTHSAFTRIHAAARVWAQHRLDVICLQETHHMGDGDLTILTRELQFAAQKIGIPG
WDIIAQSPTTNARTAGVLVLVRKDLYRDFKIIQTPARLLPANIPQGRSASVSFTWCGHRIHLINLYLMTSSYSIDQRKAC
VHSLGDVVNRIGQDDHLLWAGDFNFVHNPMLDSTTGEGSRPADLSLAKAFSECCPDMVDTYRYLHPTRRDLSFFYKTSVS
GGSRLDRIYTSTNLTPFIASSTIPVCTSTDHRLAIIALLPRLVRKRGPGLPRLHTHFLDFPDLKGSFLQWIGDECAQRPA
ETDTVAMLQWWPLFKHRMFNEVNVLNRQARERCFPPGGQLRLAIEHATRALEDVQTEHMSAQRIQAAIDAQVAVVQAARA
EGAQEAERVRLQWIREGERPSRGLTALVHPSKTLQVIPALQDRTGRLITDTMKLPQMVADFWGEICSSPTHVTEEARMAV
IEALRNRHLVIPEEDAYHVGRSEVSDAEVEAVLKEATPGKAPGLDGIPIELYKVCRNEIAPVLAQLYTAMGQTQMHPDGF
LQGAITVIYKNRGSPTSPGSYRPITLLNTDYRIFTKILTRRLSPILGRIITLEQSAFLPERLIGANVLFLRHLPQLMSTT
GQSCLLAFLDIAKAYDSLDRNFLFEAMDAMGAGAGLISWTKILLSDTASKAVVNGFFSREVALTAGVRQGCPLAPLLYLF
VAQALLCWLQYNQVGIHLPQNNSEMVTGVQFADDTEVVLEGIQAIPAFLDCMRVYAQASGQQLNLDKVELLPLGTHPHHI
TINHDMKVVHMATALNLPFTDVGETTGRDWDVQLDKVWARFRRISVLNLSIFGRAHAAAAYGLHRFTWHMEHGGFPPEAQ
LMNIEAKAAKLIDRNLGPVAQERRLTGVPKYLLYGHPTLGGLGALAVRQHVQARWACWAVRFVRALLQPVLVRPPWVMVM
HSFLHSLYPKYNPMCIFTSQVGVPWFGLIVLPPDVQRIVTALAYLPPVEDVDDHPLVPNAWCWNLPLWGNPVLPEKKLNV
QLDNIRPGLEFRHQALLGCKALHTLGDVLCAREALDGVMNATDQAGLAIRKAWHQIVDKYLQPQTPLAKSLCTYRKWQEC
MDAIAALLDDIPANWRQAASLLLPLSVESREAMVPPIESVTQTLVSRLGWRWGVGPPIRFQQLSVKIATNMQLSPFSMAR
RVAHTLFIKEATGSSEILDEAILLLQRTFHRLWFHLRWENEQKEIWWRLAVDGVPMLGNSHLRMSRPTICGCGGYPIGSV
GGVSPRYHHFWACPVAQAIADQLTLSIGLPVSREQLWLIQAPQSVQQCVWDVVALAAVSAMEHGRRYMAANMKTNPALLP
GPSLTEEAICRVIVDFWGRIQGFAALGIPRKGWESVGAHHPFLRIISGKLICSRERLPMRG
>L1-4_PTr_pol#LINE/L1 895-4518  [Populus trichocarpa]
MNILSWNSCGLGMMRKRRRITKLITEYKIDICFLLETKLANCSIGFVSRIWNENHVSWFSNDAQGSKGGLLAMWKNTNFE
VSNIEYGHGWIGLYGKHVHSDFHCFVIGIYAPCNYQDRQXLWDDLILLKHAFEVPWIIAGDFNETLSQKDRNSGICHPAG
SNSFSRFLQSCELTEYPLAEGYFTWFRGGSKSKLDRMFANSSCHLHFPSLSLRRLPREFSDHCPLILSSFLQDHGWRPFR
FLDCWTQYPNFKHIIENFWNDACSLHPGRFKFLKKLNHIAVRLRQWNKLEFGNQEAALQRTLSAINILEEKCEEEGITDQ
EQEHLDFLLKDRWVRNNHIESIWRQKSRQMWCKLGDRNNRFFHLIANFRKAKSSILKIHHNGNTFDSQQGIKQAAVDYFS
ELYDSPSERKPQLNPLGFKCLSKESSEWLEQEITMEEVKRSVWGCDGSKCPGPDGFNFKFYRLAWDFIAQDILDIVLSFF
RTGRLPKGINTTYVTLLPKTVXPIEFKDFRPISMIHGIYKIIAKILASRLKTVMQDIISINQSAFIADRNIIDGFMIANE
LVSDLKKRKAAGLIFKIDFHKAFDSVSWDYLDDIMGYMGFGRKWRSMIYECLSSSKLSVLINGSPSKEFSVRRGLRQGDP
ISPFLFDIAAEGLSVLFQRASXGNILKGLQFASGIFLSHLQYADDTLIFIPADIDQLVQVKRILRWFALSSGLHINFHKS
SIIGINVDDHLCLRLATSIFCRSDSLPSKYLGMPLGANPSRISTWKPVIEKFRKRLHMWKGRLLSMAGRLCLIKSVLNSL
PIYFMSVFKMPKGVGRLLSSIQRRFLWCGCTKQRSFCKIQWRLVMRDKKQGGLGVGSLISKNRALLLKWIWRLSSPGTSL
WKMIISSMYNPAYENGIPIFYNQPSKIWKDIMSIVQTDVHHVFTNHCKFMVGNGSLTSFWLDNWIGDYPLKTAFPRLYLL
SSSKSALVADMGRWSNGIWLWSLQWRRPLFHFEQEQLSLLSSLLESKPMFCHKMDKKIWTLNSDGLFSVKSCSKMMDQLL
YGGAKPFQSSVWIKLTPPKVQLFLWLLVQDKVTTRDFLFQHDYLTLQESRCAFCNKSLESSSHLFIHCHFTWNIWMKLLS
NRGFCSVFPKSVDDMCYQWSSMVKGKQQNLSWQLLFSCVVWNLWLHRNDVIFNDAAPNLQICFSMVRQSIALWLRLDSNS
LELNIENV
>L1-2_XT_gag#LINE/L1 394-1347 via tfasty with L1-1_XT_gag, 2 frameshifts and 1 stopcodon. [Xenopus (silurana) tropicalis]
MLALRPITILSTLQEVHHCNNNTTTLKMGKNTHKLRTEAASRLEKYARSNSQEAVSPSPPTPSVSPPLSAAPEKPQTADP
PSAPTPQTEELKIDLSLIKQDIQNIRERTGALEERVGGLEDRTANLPHELNQVKLQLQTVMDRMDDLENRQRRSNIRVLG
LPERSEGTQPEPFAEKWLKELLGQDIFSSQFVVERAHxVPLRPLPPGAPPRAFLIKLLNYRDRDAALREARRKGDLQYAG
TRISLYPDYSSTVQKKRSSYMGVKRKLRDLGLEYAMLYPAKLKVMEGDRAHFFERPEQALEWLEQRPHNPRSPQREQR
>BvL1-2_pol#LINE/L1 2638-6809 via tfasty with ATLINE1_12_pol, 4 frameshifts and 2 stopcodons. [Beta vulgaris]
MSVSCWNIRGCARKNALVDTRDFCLHNNVKILMLCEVKSQSPPSQAMITQCGFLNFDVIPTIGYSGGLWIMWKQCFINPF
DLTIIFKAERFISCLVSLTALQKEYVIIFVYAPAKQEFKHEFWCDLFRYALSLSLPFVIMGDFNEIACLEDKSGGAPISS
SRFNIMNNIFSQLPCSEIPFSGQRFTWRKKRAGDNNIYERLDRGLASPLWISLFPSANILHAVFTSSDHCQIVLNYLPSS
SAKAPPFRFEKMWCARKDYDTLVKKTWCVQFDGSHMFRLVKKCKLLKEKSKEWNKFQFGNVFRQLRQVDSKLKTLQQEIL
ANPLNVDLLKKQDLFLKKRSSLLAFSSEYWKEKSKTMNLTLGDTNSSYYHTHATIRKNRNQIRRLVLLNGDQITNPNAIA
QKLTDAFVHRFKSDDKVSFDSNLDFALLDPIISLQDNNFLTSTVLGEEIKNAVFDLAPDKxPGPDGFPPFFFQKYWTLFG
NSVIRAVQAFFHSGNILKEINHTFLALIPKIDNPSTANHFRPISLCSIIYKIISKVITSRLKTVLGEIIHPLQGAFVPDR
LIQDNILIAHEVFQAFRSKTGPNGWIAIKLDMEKAYDRLEWSYIFMTLEKLGFSPIWIGWIKECISSSSFSVLVNGVPGE
KFFPSRGIRQGDPISPYLFILCAELLARLLSSAANSPTKSVGMPVGKTGIRVPFLTFADDTMIIAKANNYSCLVIRQILD
KYFSMSGxMVNYHKSAFQCTGNVSANEKQDFANILGMTESNSLGDYLGCPIITSKVTKETFTPVLNKTINQLPKWKANSL
SQAGRSVLIQSNLASKSNYYEMQSFRLPKYILENLDKTYRNFFWNKDHLNKAPNLIGWDRICKPKTAGGLGFRSAEVSNN
ALQMKLLWRIIKDDNNIWVRLVTKRFIKNSNPFILKFPSLPRWQWRNLLKLRDTFKKGLRWHLGDGKSIRFWSDNWVFQY
PLSAIIVPTPGTETYLVDHCILDSGRWNTQILLSLVPPHIVAQIISIYIPSESQPDSLVWGLTADGEYSVKTGALLAQGI
LPASAEKVEYGWIWGLHIPPKIKNFLWKACNDGLPMKSRLEKSHIFLPQQCVFCNYASESIGHLCFQCPFTSDVFHHLNA
SFHWPIPRVCLQSLNLSCFRSALEACHSVSSKGEIVKFSFVWWFVWYFRNKLIFNNEVVSSRRATFIISSYVLTWDKALA
GDHIGSFIPEGHSKVGGSQRSGPALDWSPPDPGHFKLNFDGSKLSNGSSALGFVIRNSDGEVLIAGGISLGCHTTILQEE
AWGMKEGIVAALSLNISNLTIEGDNLAVVNAVRKIWKVPWEIRNIVTDIHANIARFDSFQVQHCFREANRLADFMAHRGH
TFQNLHYCTPPYDFDFSLCIRKDVLAWPPH
>ATLINE2_gag#LINE/L1 94-1512  via tfasty with ATLINEIII_139-1623, 2 frameshifts and 2 stopcodons.  [Arabidopsis]
MSKEVGATPGLVPTHSPEVQGPKSYANVVSSRPSLTKFNVDVSVVDGKSMVVVPDVVLEDSVPLWDDFLVGRFPSSAPHI
AKIHVIVNKIWNLGDKSIRIDVFAVNDNTVKFRIRNASARLRALRRGMWNICDLPMIVSKWTPIVEDAQPEIKSMPMWVV
IKNVPYSMFTWPGLGFLASPVGEPQRLHQETKXVTSFEEAKIFVDVDLSKPLPKTYFFNIKGEEFCVEFEYPWLPPRCGV
CGKWGHPENGCLASLGTTKVFTGPPVLLRTGNCXINIGPSVSLPVAVAVGNDLVESVPLVDSQALEVVKGDIAEEVEEGE
IASNSNQKSVQGEKIQEEGDWLTVSIQGGKSTYQKSGRTLTYGQVCIASPSRYAILSNIEDDSVLEEVQNEDSVGKETED
SVKGVLEVVVVEGKEEMALNKTQQVKSCFDGASTRVSIPRSSKKAHKFVSVPNQKATDVLPRQVSKKNNKRFP
>Karin_TA_pol#LINE/L1 2-2899  [Triticum aestivum]
LVAREWAKDAGGRTSVERWQNKIRHLRSFLRWWAKHLSGIYKVEKERLLTLIQSLDLKVESTILHTSELTAKLEAEMRLK
ELLREEELKWALQAKVRKVVQGDVNTQFFHMIANGKHIKKRIFQLEQDEGTILGQENLKLYITEYYKQLFGPPEDNCVSL
DESRIEDVPQLAADENDILTAPFLEKEVFEAISQMKNNKAPGPDGFPAEFYKKCWHIIKGDLLLMFHDLFSGXLQLFHLD
FGTITLLPKKTEAVRIEQFRPICLLNVSFKIFTKVGTNMLTQIAHSVVQHSQTAFMPDRNILEGVVVLHETLHEIHMKKL
DGVVFKVDFEKAYDKVKWSFLQQALRMKGFDEAWRRQVESFTQKGSVGIKVNDDIGHYFQTHKGLRQGDPMSPILFNIVV
DMLAILIGRAKEAGQVDGLVPHLVDGGVSILQYANDTIIFMEHDLAKARNMKLVLCLFEQLTGLKINFHKSELFYFGRAN
EEQEAYRQLFGCELGTLPFTYLGIPIHHSKLTNRERKCIEDRFEKKLSCWKGKLMSYGGRLILINSVLTSMPMFLLSFFE
VPVGVRKRLDFYRSRFFWQSDELKRKYRLAKWDIICRPKDQGGLGIENLEVKNVCLLSKWLSKLSVKTEATWAQILHSKY
LHSKTLSQVIARPTDSPFWKGLMRVKSAFFNRTKFIIGNGTNTRFWEDTWLGETPLALQYPTLYSIVQRRDASVATVFQS
IPLNIQFRRTLAGNRWEAXIHLVHRLMEVQLSQQPDQLHWKLTRTGEFTVKSMYLNVIHSSPIPSSKHVWKVKVPLKIKV
FMWFVHKQVILTKDNLAKRNWTGPTRCSFCDRDETIKYLFLDCPLAKVLWQMVHIAFNITPPNSVSTLFGTWLNGIEAET
ARHIRVGVCALLWAVWNCRNDLVFNRTTNFHFLQVIFRATALIRMWLLLTPMEARERLVTGSIRWEMVTWNIFNRFGWRS
CNRIGN
>L1-2_CPa_pol#LINE/L1 1404-5038 via tfasty with VLINE9_VV_pol, 1 frameshift. [Carica papaya]
MTDKIISWNVRGLNDHKKRVIIRGCLNRWKPTIICLQETKMEVIFEKTIHSLWKMADIGWHFLPAKGSAGGILIMWENGQ
SSMSECLTGEVTLSCLFSNNNSNSWYFSGVYCRGNSSERLLLEEELFNVKNTWGVKGIVGGDFNMILRSSERSGSNYSNN
DIDDFRALLDKLDLNDLPLKGGRWTWSNQRSQPSFSRIDRFLISSELLLELSGVNQNVLSRPTSDHFPISLTMDGIKWGP
VPFRLDNKWLGLESFKDLVTNTWKNTHVQGSISYRIAVKLKSLKQEIKNWARDTGRKEEESITDLISEIDVLDRKEENGN
LNFLERERKCHLKADLAKKLQMEATSWKQKSREKWLKDGDKNSKYFHMLANHRRRVNYVEELNMDGKCIKGNEALREGAK
EHFQKLYKESTNYRPKLDNLFFNSLDEVQKNLLEEEFSEEEIWSCLKNCDGDKAPGPDGFNIKFLQTFWEVIKPDILDFF
KDFHAHGKFVRSLNSTFLVMIPKKAQPKNINDYRPISLIGCIYKLLSKVLANRLTSVLKYIISNSQHAFVNGRQITDAIL
IANELVDETIRHNKKGILCKLDMEKAFDHVNWNFLDYLLQRMGFGDKWRNWIKSCVTTTSLAVLVNGGPSSFFTATRGLR
QGDPLSPLLFIIVMEALHQLLERAKNIQLIKGVSVGNNTRHIEISHLFFADDTLIFCQPNTSHLIFLKCILICFQAVSGL
KINLHKSELVDLGCCNTGNTFCDILGCKKSTLPITYLGVPLGTKKNDKRCWEPVIETFNNRLATWKRKFLSKGGRLTLIK
STLSNLPIYYLSVINIPTNVAKKLEAIQCNFLWGDSENNKKYHLVKWSDVKKPLREGGLGLRSLTKLNKALLGKWIWRFW
NDNNSLWKLVINCKWFKGNPHDLSHIQNSNYGISMWKNIINLNDAVFLCSKWSIGNGQKIRFWDDIWCGTEKFKDRFPHT
YAIAKNKHASVWEAAGSACQVSWNVPVARNLNDWELEDYESMLLTLAGITLTNRDDRLTWNLKKNGLFSVNSLYCFLDGQ
KQNIQRTFPSKIIWKSGAPPRISFFAWEAAKEKILTLDNLMKRGHTIVNRCFLCKEDLETCNHILLNCLTTRNLWNMILG
LLGVSWVFSGNVNSELMAWEGLGSSNKFIRLIPLTIFWVIWKERNKRAFDGVEYDFNIIKDNWFNYFGSYILGHNLDCFD
DLGIIVNMLIEM
>L1-1_AFC_pol#LINE/L1 691-4427 via tfasty with L1-11_DR_pol, 3 frameshifts. [Cichlidae]
MGMLRFVTWNVNGAGTRGKRLKIFNQLKKLQADVVLLQETHRPVTGLNELKTPEFPNVFAACYNSRQRGVAILIHKNVNF
TVLDTVIDPEGRFLIIKLSILEQKTMYCKCIYGPNVDDPSFFHGFFSALSEHLDCTLILGGDLNLGLNEDMDRLNTTGTQ
RNWQSTNIIKQYMSDFGLCDAWRSLHPTSKEYTFFSHVHHSYSRLDYFLVSSSLLCDISDTEIHPIAVSDHGPVSLTLMH
KNNTTPRKNWRFNISLLKDEDFIKYFKKEWTSYLDFNDTPGISASVLWEAGKAVMRGKIISFSSHKKKEENKNIQELEKN
IKSLEEAYASHQDQETLNKIRKTKLELNEIIDKKTQFLIQRLRLQNFEHSNKSGRFLANQLKINKEKTTICAAKDLSGNT
IYDPGRINNIFRDFYETLYSPQINPSKNEIDLFLDNVTLPKLLDSQAMELDSPLTPGELQEALISMPXXXXXXPXXXXXX
XXXXXXQILAPVFHXMLXEIEEKGRLPSNMNSXNISLLXKPGKDPLFPSSYRPISLINVDLKIICKALSKRLEKITPLLI
HPDQTGFIKGRHSSTNXRRLLNLIDYSYSKNXETTILSLDAEKAFDRVNWKFLFATLHKFGFGNSFINWLKILYNSPTAC
VRTNDQTSSSFCLLRGTXXXXXXXPSXFAIFIEXLAAAXRQXTTIKGIKCKNVEHKISLYADDVLLFLQNSQTNISGVIE
LINSFSRVSDYSINWSKSTVLPINCSFHNSSSAPLQSGNIKYLGINVSPKLSDLTKLNHIPLLKKVEGDLARWKSLPISL
MGRVAAIKMMVLPKINYLFSMIPNKPSQDWFRSLDSYISKFLWKDKPPRISLKTLQRTKDRGGLDLPNFHQYFLANRLQF
ISGWLKHTFLDEPWLDVEQALCKDLEISDLPFISSNIKRHECFKSINISSSLTAWWEFLKLTESSLIPCKRTPIWNNPDI
LQNNNMINFPDWSGKGIKYLEHILEGTEFIPFDRLVAQYGINKKRFLEYQQIKSIVKKKFKPGQVELQTPPSAAQFLTLK
SPKLLSKIYRTLSKTDESISLPIAKWEADLSVNLDQNFWSQICLKTFHLIRNPSLQLIQYKILHRVHYTGHRMFKMGFTS
TNNCSHCQANSPDNYIHALWFCPPVQKFWREICEDLSKCLKCNIPTSPLVCLLGSLDNVTSEKNIAHMVFTALCIAKKTV
LMNWKNKNNLNSNQYRNYLLDYISLDTASATTSDQLLWAPLISSIT
>Kiri-11_CQ_pol#LINE/L2 1470-4310 [Culex quinquefasciatus]
MSRTNLPNLRIGHLNVRGLEHSIDGVKLLLDKTQYHFVGVTESKLKQSSPAGPIRVPAYNFIKHSLPTGRGRGARTCGGV
GLYVQKGIKATPILRSLHDPTIPISQRFEFLAVQAKINDLNICVVVLYNPVCTNPHFAQAYEKLLIDLLDFGFDRLFLVG
DFNINVAAPQQSVNLVALSRINAAFNLTVLPTGPTRITETTSTTIDLLITDSPGSVIKSKTCTGNAISDHEVVYLLSNVR
MPRSAPQTVRTRNLRAIDPMRLQMDFQARNLQPILEAEDTSAKAVLLNGVLTDLLQQHAPERTIVVRDKRTPWISETIKQ
AVALRDLAFALYSRNPNRVRGDNQWQDYIQKRDRANSLIFAAKKRYADQHFDANLPAKTLWCNLRREGIHNNAKKNQATE
GTDADELNKFFSDGHRQLLGARQENPAEPAHRTEIDHGADEFTFRATSGEEICRKIYEIQTNATGPDDIPISFIKLLCPF
VLPILTHLFNEIIMTKVFPECWKKAIITPIPKQSNPAQPKDFRPISVLPAVSKVLEKILLSQIAEHLDNPNAPLLAGQQS
GYRKGHSTTTALAKVTHDLYENLDNGRCTVMVLVDFSLAFNCVKHQKLRTKLQSEFRFSRAACDLISSFLARRKQSVRLA
DTLSGERDVPDGTPQGSCLSALLFSLYINSLPSTLKCSYHLYADDLQVYTSGPSADVDTLVRAINEDLEAIARWADANWL
APNPKKTQAIVFCKTGIVEPQTNITFCGQTVPLSETVVNLGLKLDRNLTWKPQVNDVVMKTYNVLRTFRRFGSVLSTQTR
LKLVQAVVMPIFSYGDIIYTPGLSAALKGQLHRCFKSTVRFVYGLRRRDTTAAVRDNILGVDLPSNQRLRICCFMRQAYH
GSLPEYIQQHVQRGQLERARCFIIPRHTTSSGKSVLVYGATCWNGLPIEAKTKTTLFSFKSCVKQLV
>Bhikhari-2_DR#LTR 2883-4664 [Danio rerio]
MARPKDPVGHWKDLEAWLSVATDSLLPKAAETLQHLTQDQLDENLNSLMKQDPSKSYNHKDLAKITGTLSHVLIATLKLS
DRHSAQLQHKLTHVQSRINQLELEAQERPEQPDETDQAAKEEIDKLQETLAATTQEMEQAKAXHADVANKLEYVEQLLEE
VNADSKDKDSRIKALETHLSEARHEVRRLTQQLDYIKEESNSIKDELKHAYELTHNEKAEGSLPKPSPSPSVPDNHVSPC
GLDLRDLDKLVKNLGKFTPNLPGSQDVHAYLQDIDFHLEMRPNVTDKDRLYLLRATSSPEVRSFLDRQPAHTKTDYLLLR
EALIREFDDIESEQGLVAALETKQGRHESSQAYYSRLRRAYFGTRNEPEMEEDLNFKILFLRNLHPGVSHHLGVLACPHT
MNTQQLRDLAHKAYVKQKTASEKSAKIPAVYDFNTQSQDLALEGAQGPDNARLPPSEWNVSSYNRQRDCHADTRPKQWNR
RWKGLSGRQHSPERHRERPWNRSTSFVNQRGTSSWESSGTSKVKQHHLDATSPRGQRKNSQRFHADQAPTESPQGTTSPC
FDPQELMKMILKEFFQRREADRKWERKGKPDSA
>Bhikhari#LTR 1-1851 [Danio]
MAHSKDPVGHWKDLETWLSVVTGSLFPKAAETLQPLTQNQLDENIDSIMKQDPSQSFNHKELAKITGTLSHTLIATLKLS
DRHASQLQHKLTRLQARIEQLELEAQERLEQPSEVNEGTTEEIDKLQEALTAITEEREQARADHADVANKLDYAEQLLKE
AKVDLRDKKARIKALETHLSEARHEIDRLMQEVDDIKEESASELRHAYALRYEPPKTRCAPASPLPSRTGSPVPELSPIE
RGEKPCQRSSPTPSEEPYLTPQRREPVIASHRSSYSLDLKDLDKLARNIGKFTPSVSGGLEVHAYLQDIDFHLEMRPNVS
DKERLYLLRATSSTEVRSFLDRQPARVKNDYRLLQEALIREFANPESDQGLLGALETKQARNESPHAYYNRLRQAFFGTR
NEPNMEEDLNFKILFLRNLHPAVSQHLGVLACPRTMSIQQLRDLTQKAHDKQKMVLEKNTKTATVFDFNTHPELALEGAQ
RSNSVRPPFPTWNASSSNRQRNSYDDTRPKQRNSHWHGPHGQQRSPEHHRERNQWGSNKSWSPSKGRHQNPGSSSPRSQR
RYSKNFHPDNAQTQSQQEENAPLGFNPQELVKLMMKEFLKCIEEDRKREKEKADSA
>ERV1-N4_DR_gag#LTR 301-1761 [Danio rerio]
MSSXMEWNTYNEYDLFTLWTENVEPVLYKLTRKGLDLDATSEDISIWWKTVGIKQKKCKHKEIIEALNYLNASSIRNNLK
KVFANLKEKTEQLVTADSEAQKSQEKIEHLQSQLDKLLEDQXALAKRCEKYMDIIEDLKNKLIVQKLMPVRNTKANKHMT
SESEXADDISLQKVPVSALKVMKHPNGTETNIQRALTVHECNSFKAEIGPFPLKGPFQPWWRRVVRHKYAFQLEPKDIWQ
IVXTSIPNVLIYKAPQVLIEGTIIQPIHPNESESEILNRLKLCLCDLRGKSPAEWELIYNRKQNNAESFETYAENLFELF
EEYSGIDDVTRNNPILLGLLVEHAGPHVQKALMAGASPPKNTFEDIVNWGTKVESRRQMHSELAASGCHEDVKAIRQSSK
IPCKKQDRFCCSCLKMGHTEQKCWSLNRGRPPPYFLRRRQSQSKDTEQHSRSSQNSTSSKTITELTNMAMQGLQLLASFA
SGLTAQ
>Gypsy-21_Crp#LTR 1046-2501 via tfasty with Gypsy-17_Gav, 2 frameshifts and 2 stopcodons. Contains RRM (RNA recognition motif) but otherwise far from other elements.[Crocodylidae]
QQAEELGEQVQGLRTERDHLKEQTTALETLLGEPGxGNDDRERAAAATSPGEELQRLDKAAGVVESRPRSREGPRDQGKP
RKLRRSRENTEGAGSNAGGPPRGESERETGLLAEQGQLLQELQTLREGLQGLQPSRVTNGSPLRxAAKLPGNLPQVQQVE
EVKGKDLMDRGVQTPRRSDSLEEELEAVERRPGQERGALIEALRQSRAQVEELQSALTQGSVKGKPPRTENQEYPGDDSE
PGQSGGPIQEGDPTERGLDASHKETQADLFECWEPRWAQWQELHPQGLARLEQQLGRLARGQGKLCARGDSPSQQGERKA
RVRAKGARPPQKEKGAPGQGGKSDRHPAGRRPGPEKRPCLYMAGIPQQVTWRTLRHXIERKVGKVAWVQIYKGPGGRHTG
RGRVEFWREEEAQKAQRCQWEIWGKLQDAQAQQESRAARRNIGPEGTRKGTREWRSRRASRRAADEVGDLPRAANVGGLP
VAGKPQ
>ERV3-1_CHo_env#LTR 5643-7337  [Choloepus hoffmanni]
MKLLVLIIMFHIQGVTGSAKLVISIVEGLESQTVQFDVCQVISCRNLKHQRRLREEYKHLCKQTVQIESKIVGGRTFESI
TYESPDPCYSWNAVWWTTQYKGWVSPRLEGKPLRETWLESNSPVQIDPKVIRILKARDLKQTIEIETGYGNTNAWVEWVK
YTVQSLNRSDCYACATSQPTAQIVPFPLGMKKHEKEFKCITLLFQNATPGESCSTLSSLFPPVQKGSVKAIPASRLGPGN
HSACLSRWEEGLQDLGTMALCTQVWNVSKDSTGNFSSLTIPRADLWWYCGKGVLRPTLPEKWGGTCALVQLAISFTLAFE
SKEKVPTQGKGEKRNVQNVPGSFNGRIYVDSIGVPREVPNEFKARNQVAAGFESFLFWWVTINKNVDHQLRFINYTRDVI
KGIAEQLDATSRMAWENRMALDMMLAEKGGVCAIVGGSCCTFIPNNTAPDGTITKALQGLTALFQELAKNSGINNPLTEW
LENWFGKWKGIATSILTFLIISAGMFAAAGCYIIPCAQRLVQRPIKTTLIKNISRTIYTSLKKKDPYDEECEKALSKFEK
LKCEN
>Zorro3_gag#LINE/Zorro L1-1_CA 2-1829 in RepBase. gi|14286190|gb|AAK58882.1| unknown [Candida albicans]
MTTNGTNGFDFADKGDHPPRQSQENPPGNFQELPLDGGQIRKSSSNDGVSNNVEFNTNTNAHESWADYPESDQMDTDSSE
YYTEDENEEGKIPKGPYHQFQNANKFTYFTPETATTLVAPNNNTQNTTTEQDNMSKTYASVAATFKTNLAKSQDKQEELR
MSNFKVPQKAFDDLKRHNDAVFPEEVMTSDLSTIINKYGHEKVFDTIENTLITTAQNLEGYLSEYPENVMRKAFKYFTLK
LSIEDKQTRDVCEEILGIREELMYIQRILDFNIMDKVMCFMPFTFEQMEGKLSSEKAKVRTIVENLELDFDGTVEHIKID
SAKRNRQLVAFKVPIHCRSLAERYFRQIFLHKEDVIVQQYAPIIEKVQLGRKGKTEENNHQLLTEYVCYFIVDLFSGQVP
KRRIKIDNTKNKPSSYEQCTSRVLSNCKYCEYCRSMTHTKYHCPLIKPCTNCGVKGHKTTSCKKASSTNTSVLKRPETKP
NFPILPPKVVNKTTSDDSQRKGSIAKTTSHTKGDNTEKMVTPSAQNENTTLQESIPVTITGHREAPTTPPVADTTAKKTM
TTGVSEMDTSKHTISSNDEASPRKKLNVKEKPSNPEKDPGLNSPPNLQ
>Tad1-12_BG_gag#LINE/Tad1 86-1816  [Blumeria graminis]
MPALRRRKKPNPSPVGAATPTRITKRNKQPAQTVIVEPRMPVELNQVPPVPLDMQIDSDDEFMDLEAEDDALQTLTQQPS
NSHIPSVPLQRTTPKVPKTLATQDQGLASSIFAVATLPPPSGQAARNTSQAPAPAAAVQRSVANPSSATTNELATTLLAW
QNAGAIHLRCLPPAIAADLKAIVTRSAARVIAGLSVFDQTTTGEDPQATNRSAGPAIRQPRPETSQKQTYATAATRNPIL
ATQTTPTKKTVIAPPPKQTKSLPKVPKVDSRVIIRLPADHPLRGQDTFLIRTRLRRLTDRPELIKDVRIVPSGIAIVAPT
AAQAPELLQVASAFQTITGDAPIERQENRNTFILGPVPKYGYNHLGEREALTMSEIRQELATTKIDPESIFSMSWTRRSE
LSPDYEGTIRLVIASESAKKYPTNLRLFARAVKLRQVDHQPPLQVCSRCHAFHNVNRCTRRPRCGTCAADSHVGPCTRPE
KCLNCDGPHPSSSLGCPARPIRANGSFARPDKTRLRAIRNEGQKAWTALHPPISVQATASSGNNQVPTQPTRIASPSPPQ
IGQESRYSALMTIEESL
>Tad1-8_BG_gag#LINE/Tad1 54-1511  [Blumeria graminis]
MNTLPPRPPSNHHPPLPTSTQPSGGESLTELLLSTTSAADTRNQEATLLFQNIACVLDDATSGECLPQHLLKPFREFIAD
LNSVARRHFECHVRGSPRPPAPYSASPTQPQTRQSIYNPDTQSTSAAPQATPAHHQPRSYAKAVTDAPKQQNQQQQQQTS
NKPAQPRQKPPREDNRLLVRVNPGHPALSMSPYAVMLHLNEFLKEKLIREVQTTKTGFAICPASIPAQEALINRMDALES
HLSTQGDCKVEKPTNHAAYLLTGIPRSYTGFNGISVENIPITASTVTEALMDLTNIQPINVFEPQGSNTAQFSHHKDWIA
LYPEGSVLSRKLPLFGVYVPAKKLTKKTKTPQCGRCFGWHNERACARASRCRLCGSTQHLENEHISCDPTRPHDCPPRCI
NCHGPHPADALECLFRPKKDNSVPSKSEAARIRQMASAARLRIKAAHCSIISTQAPTGTVQTEVAIPSTPTEVRRLFTEY
PSPCRQ
>Tad1-12_BG_pol#LINE/Tad1 1816-5526  [Blumeria graminis]
MMTRGRTHKSQSINGLCIFQVNVGKRSPAHDSALELASKSGADLVLIQEPWISTDLSRKLTKNHPEYNSFSPLPIWTSRP
RVMTYTRKGCGLSPFQPSIHSRDLLRICISRRGKRTIDCWNIYNAPVGAVGAGDGLQLLLNLSDIPDVLAGDFNIHHSAW
DPAAYNENSEGDSLLEWTTARGITLLNVYYAPTHDAGATIDLCFARHSLNASCAIRIDLEVGSDHRTLLTQLSDTGPETD
TSGKLRYSACNWVTFRKIISDRLVAAPSSDPEREASFLVDVLQGALNATCPRKRTQGPRNRWWTRDCTNAHNALCQAKRS
GSVATAERRAFGKAVKIAKREMWRNKVDQVSCLTEAYRVTSWHKKIPRFHTPPLNGPDGLVFTPMAKAQLLQGALLSRHM
EHEDIVMGIPTVARRSLPWPALTNQEIFRSCCVVSSSSPGLDEITAEALRQAWPVLGPRVTDLFRLCDLQGLHPKAFKKA
SIIILPKAGNRNKALPKSYRPIALLSCLGKGLERLMARRLSFLALSQNILAKNQCSAVPHRSATDLTTALASDIQSAWLE
KKVAGIVTVDVKGAFDGIQRGRLCHNLRTQGWPHNLIKWVASFMENREGVVALDGTTTPPFAIKCGLPQGSPVSPILFLL
AIEGMLRLSPGCFGYADDAAIFASAPSLPECAARLQEKLDNVLAWGSLNGIELEISKTELQYFHRKKGKPFEPSLRADSV
EIRPNEQTRWLGVHFDRCLKFRHHIKQACGRVTAVTAHIKSLCNTARGIQPALARQALQGAAFTTLFYGAETWFSANTCK
EDIARIQRRINDAARAALPVYKTTPVAALLRETGWSPAQGWLERIHNRLAVRVASADPQHPLRLRWKSPRMAWIRRRISP
ELSVNTTSPPWTPKRDEILAAIGAVGREAGLQVFTQWHSSAPPLDLFVFSDGALMEGSAGAGYCIYRGAKHVIDQGSVPL
GQSAEVYDAEVVGAMEGLAAAIRSPMAYYATNITVCLDNQEAASRLLLGPPTPTSSTRIAKFRDLARSWPSRNRARYTEP
GRVSVRWCPGHSGIPGNEKADALAKAACIITAPNLAPSIARARRIVNLRYEASASEYWSQNAPDRYRALRIGPSSRITPE
LASMDRRSLSLLLAARSGHGDFAAYHRRFAHSSAPLTCSCGQDKSPEHFMTCQHGLLQARLRGANGPRPLDARWILSSPK
GAILFRDWLMSTLFFRRVSNVPVMGESLSAPTFVGQP
>Tad1-23_BG_pol#LINE/Tad1 1445-4793 via tfasty with Tad1_NC_pol, 1 frameshift. [Blumeria graminis]
MKDKSILSIIQYNVNRSKNKVQHDFLQALNPLKHHIVALQEPWRHPTEQHDRPHPAYHLVFPSGHKGRTCIYISKSLAIS
KWRRERVPEESQGDITSVSLDTDLGKIWIHSVYNPPPLHHSSLEEGTLKWLPQILSQEGEHILVGDFNVHHPHWGGQSVL
RHHKIADSFIEMLGAHDLNLILPKGTITWKSRGSQSTLDLAFVSNALESTVMACKPAFDLEASSDHIPICTQLHIEPPNR
EEQQPRPQWKKADWEEVNRRLALKLSRLSTDHLELNSPESIDQRVSAITQAIKETIPTARPSTFAKPYWTKECSETVKEA
RKARRLWTKLGSEESWVEYQKATNRKKSQIKKAKMIGWRAIVSEATNDPAKLWKLAKWAKKSPEERSRLPQLPDIKDKDG
NMFTEDTEKADILAQHFFPQPVQANLEDIDGTRYPEELTTVSSIITASEIQDTMANLASEKAAGPDGISNWMLKNCRITL
GKVLEKLFNACISIGYHPKGFKESVTIVLRKPQKESYDNPKAYRPIALLNTLGKVLEKLVANRLSKAAEAHHLLPDEQMG
ARQLRSTISAVELITEQVHSIWGKNKRRVASLLSLDISGAFDNVSHKRLIHNMRAKGIPRWTTQYIESFLEHRTTSMNLG
SFKGEQFPTSTGIPQGSSLSPILFLFFVSTLLPELQSPSSTAVGFVDDTNILTWSNSTEDNCRNLERLHGICEKWADRHG
VKFAPEKYQLMHFSRARKRHNMQATVQIQGHLAKPQPSLRVLGIHLDPKLNWGAHVKSIQLKVEPQIQALGRLAQSTWGA
TFHKAKLVYNAVVRPAVTYGSPIWAEPGMAGKIPERVIKPLRSIQRRCLKIVTGAYNSTSSKVLEHETSTLPMEIYLKQR
RVQHAGLSKSLPVQDTISSACRKIKQPRAGRQDARAVTRIMDIADWGKIGANIETKERQKAAGKIAAFKEWERSWTRLAA
RQPTNHHATADPKIWNAANIFTDDKTGRTRMDQRGTPSSLHKHLSRAQSSIAMQIRSEHIGFNSYLHRRKVPGVDSPRCQ
CGYPSQNVKHMVMACTSWAKGRGEILRKAENRSFEAMMNNPKDLARITRWIQQEGRLEQFRLTLEVEATMRAREEG
>Tad1-13_BG_pol#LINE/Tad1 2233-6123  [Blumeria graminis]
MTGHQKVLQCNLNRNSQTTEAILQLALELKIGIIAVQEPWIANMRQRSTYEGARSISHPSFIQILPETLNFNLRPRVMFY
ISRLLDIQHQILHGYPSDPDILAVKFSSPKYNINLINIYNQKNQASEDNLTTMERHGQALKISLNSIIVGDFNEHHPNWD
PNYPKSPSADNLQDWMEDQGLSVLNNIGQGTFYRPHMVVPSVIDLTLATTWSERYVQDWQTIPIGSDHQGILFTVLNQEK
GHHQTIFKKERFIPQKADWEKFEATTCQMFKDSTILEQDNLKQLSGKDSHSLLMERDILKSKLDIIGQEITDIIIRAAEK
SIPRKKPGAKPKPWWNKELKCLRKIMMKAQRNHIKDPSSENRWSQYTAARNKYFQEIKTAKKNHWNLFLEKEDPGTIFKA
LTYTKDSQFSQLPMIQDQNGVLKSNFEDKCEAIRTKLFTPPPQAPEIEWSTHKELYWEWPCLTPLEVERACCDPSKGKSP
GPDQIDQNIISHAYQANKELFFKVYSVLFNIGYQPKCWRQAIGIVLKKPSKPDYSQPKAYRIISLLNCLGKTLERMLAKR
LSHLAETTSLLDPSQMGGRLKKSAVDACLMLVDKVQTEKEAGRKTSTLFIDIRGAFDHVAKNQLLAVMNRLGLPLNLLTW
VDSFLSDRQLKLAFDGKEEDFSSVETGIPQGSPISPILFLIYIRDMFSSRSGQFISYIDDIALTVSSNSFENNSKLLEKE
YKKLQEIGKENAVQFDIEKTELIHFAKTKEAKKCQMILPSGEKLSTGGMVKWLGVWFDQNLSFKYHISTKVAQAKAAFQR
MARLTNTERGLSHIAMRQLYMACVTSISDYASPVWWRGQQSFADKLQGLQNIALRKILGCFKTSPIRPMEVEACLCPPEI
RLNHSRRKYAMRTFSLTPNHPLSVMMKQNLEKYIYQERINAKENQVKRIRESLKYNPDLDDIEQVDPNLWSPWDIQIPYV
VHMGNGGKDDEKILHNKFLRNARGNSQIIYYTDASETSDSKGIGLSLIAYHQIRKIKRTEYYSLSKDTSTIYDGELEAIV
RAIEHAQRQDWDCKLVTIFSDSQAALKRLGNLSSKSGQTKVIRAIEAASQLQNHGIEVQLRWVPAHQGIKGNIEADKLAK
IAANSNPDESYPLSLVHMGNKLQEIRCLEWQKILERYDEKRQEDENPYSYSTIYPWRIRKKPWIPRGVRREVSSSFYQLK
IGHGYFKSYMKRIGQSSLGDCSCGEEQNPRHLLLDCRRYGQNRKRMKERLQGQELSLEILLHNKIGISATLEYLRETKIS
TRGWYLGGESRRVDMRS
>Caulimovirus-1_BD_gagpol#LTR/Caulimovirus 758-5962 [Brachypodium distachyon]
MDLSKSLIRRDRNLQLIRQESKPLTMMHRMSCSKADDIDSLEEVIDLERDLERYQKDTLRKIKPQQVYHMGLFEGRGGLY
RISREVELSVLTHPVELRIVSKNIENELKYCGYKYIHQGMYIIGVKGMTRKKLGAKVLITLLDKRWGSVDKASLGFMEGD
MNENRLITYIAPDLMMPVKEFIDKMSLGFQTKGYEEFKGTNLLVSIEFIGRLTNKSSSKYRVNVDDVIESMQSKGIKFMS
PLKIGSEERAGEEWKISELIEKKELKQPNNYISYQNCEGTSSIRFTNYKSATIDDTESFASESEFNENKNSGATEYMEKA
DLDDEIIHYEGKLKHIEWEYNNSMTKDWPKIREKELFFIREIARLKRLRNEKKPVIGSSIRLNKNITIKENKVGSSKANN
TDQSHKNKDVGEEEQWDINNKILTESYEEEEELIKDMLKEDEVFDGSEDNSDFINSLDDVGIHNLENAMEAMEVEMNNKR
RRTYGDTSVKREGERERPRRAAGTWPPEKDDFQPTYIPEQYRYMGTKRRDFEKPVQFQNYKNEGAILNLAAHDPIDWPNI
ISIWKGLIVQKYIQNQHSIGNKVEDMITYLETFLGESVKVLWEQWVETFPSQYEELKAAGSNPHNFANIISLIVIAEDPD
LGDTTLQNERLREIEKLTLTSWKGIKEFSQHYLYNATTAKQGFNKGVVERYFNKLPDPLGSIIFEEYKKQTEGSVSNISQ
AINFVFKQLRKVCMDIQAQRSMKKADYNFCNNIVQIPLTYGENRHKNKKYYKPQRRDNRNFRTKKRYFLRRSDNRAPYLH
KRNVRRYDPRKTYDKTCRCFICNSPDHLSKTCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDEEIKDDESIYSIIETD
EVENDTLEEESSEDEIDLIDDLAGLKIEMMNQVDCEHDWIRGKGDYNIKCAFCIYYPSQENRSTCSLCLRQACASCLKAR
NQAWRQEIVCEPEERILFSRVRNLENRINKLEADLEEVKYNLENNSSGNQYQEDNMVKNTELKDQMVTVKERKGDRLIQL
KDAITSFGNKYIVRLPFKEVLGIRIPVKIVLKPNISYKILALLDTGCTKNIIHDKYFARCPEIVKTIDNDKAEVSTDMSG
IQKIHNQLAYNIESYINGTKYIIDEITIRDLSVIKDDMILGLRFLQQSLQTTIIHEEGVTFIPYQDNVPYISEIIRQRKS
IQNAEISNIDEEYSADEDSLEICKEEELSNAIEEYHIENTCTECIGLQSFSPNWYRDIKTKKDIDKIVQKLEDIQIIGEI
PMKHWDKNSIVCKINIINPDYIIKSGPIEATPKDIEEFKMHIEELLKLKAIRESRSPHRSAAFIVRNHAEEVRGKSRMVI
NYKRLNDNTIDDAFNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIPWTAFTCPQGHYEWLVMPLGLKNAPALFQ
RKMQNIFNENQAFILVYVDDLLVFSKSYKEHIAHLEVFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIA
KKILQFPDSMNDKKVLQQFLGIVNYARNYIDNLAKLAGPLYAKLRKNGQRYFNSEDIKLVKAIKEKVKNLKPLELPLEDY
YFIIETDASKVGWGAILKQKPNKYSPKAEEKICRYASGSYKLKTVNNIDREILAVVHAINAFRLYLGFKEFTVRTDCEAI
CRYYNQINSKKSSTRRWVLFEDIITGNGYKVVFEHIKGKDNCLPDIFSRSSILQE
>ATCopia24#LTR/Copia 271-4671 Wised via estwise with ATCopia62 protein and ATCopia17. wised product [Arabidopsis thaliana]
RPPINNNGDQFRYPADQYENPYYLHSADHAGLILVSDRLTTASDFHXWHRSILMALNVRNKLGFINGTISKPPKDHRDFG
AWSRCNDIVSTWLMNLVDKKIGESLLFIKDERQNSVKPSTRIDNVSFQSVAPMMNDVENAYIATYNTVKASEKPICSHCG
KVGHTVQKCYKVHGYPPDMKIGNQGYTYKVNPQLQVQPRIQMMPSQPRMQFPNQMQMKPYANSMQKANDVAHVYTENCAY
LSEGYSFNLMMVPYGSYGSNIQQMPHVTQGGNNLSLQDFTPQQIEQMISQFQAQVQVQEPEASSGNPSPTSTVSEHGLMA
LTSTSGTIIPFPSTSLKYENNNLTFQNHILSTLETFLSHNSRIIDSGASSHVCSDLVMFRELKPVSGVTITXPNGTRVSI
THTSTVHITHKLILHNVLHVPDFKFNLIKTLACSAHFYVSCCLIQELSQGLMIGRGKLYHNLYILETGNKSLSTSIPEAC
SFTGSVLDDGNLWHQGLGHPSSPILQKLVSHIPSLKSFHCDVSSCKICHLAKQKRLAYVSHDNLAEKLFDLVYLDIWGPF
SIESIEGFRYFLTLVDDCTCLVDGXTWIYMLRNKSDVSSXFPAFLKLVSTQFNTKVKAILSENAPELAFTELIKEQGMIH
YFSCAYTPQQNSVVERKHQHLLNVARALLFQSKVPMQYWSDCVITATFLINRLSSPLLNNISPYELLLKRKPDYSLLKNF
GCLCYVSTNLHERNKFSSRPKPFIFLGYPSGYKGYKVLGLESHTISVSRNVIFKETDFPFKISELLSKVVDVFLNTILPL
PAPLDFVDSLPLIDEDTLIPTAPSSSSSSSSSSSSSSSSSSSSASSSSSSILVPSTVNHNKEALGTDLNTVPITRSKRTT
RAPGYLSEYHCSLVPFTSNLPPTNTIPSETLLSVTLREAPSPKKTTPYPISSVVSYDTYTPLFQSYIFASNAEIEPKTFS
PAMKSEKWTKAANEELHALEQNKNWMVESLPEGKNVVGYKWVFTIKYNPDGTIERYKARLVAQGFTQQESIDYLDTFSLV
AKLTSVKMILGLAAATGWTLTQMDVSNAFLHGELIEIFKSIPQGYTPPAGVSLPPNPVCRLLKSLYGLKQASRQWYKRLS
SVLLGANFIQIPADNTLFIKFTSASFVAALVYVDDIMIASNDDKAVEELKALLRSEFKIKDLGPARFFLGLEISRFSQGT
SVCQRKYAQNLLEDARLLGCKPSLIPMDPNLHLVKDMEXLLPNPTTYRELIGRLLYLTITRPDITFAVHQLSQFISAPTD
IHLQAAHKVLRYIKTNPGQGLMFSANVELCLNAFSDADWEACKDTRRSVSGFCVYLGTSLISWKSKKQAVASRSSAESEY
MAMAQATCEVIWLQXLLKDLYIQVTCPAKLFCDNKSALHISMNPVFHERTKHIEIDCHTVRDQIKAGNLKALHVPTENQH
ADILTKSLHPGPFHHLLKQMSLSNLYLP
>ATCopia12#LTR/Copia 103-4765 Wised via estwise with ATCopia13 protein [Arabidopsis thaliana]
MASIDDGSSTTRMTSSSSPVVTMGVSPXTLSSSENPGTTISSVVLNGDNYNEWSSEMINALQAKRKIGFINGSIPKPSAN
DPNFENWMAVNSMIVGWIRTSIEPKVKSTVSFISDSHQLWEDLKQRFSVGNKVRIHQIKAQIARCQQDGQSVLDYYGQLC
TLWEEYQTYKPVTVCKCGLCTCGATREPAKEREEEKIHQFVLGLDESRFGGLSTPLIAVDPLPTLGEIYSRVVREEQRLA
SVQVREQRQDAVGFVARNDQSSFPSSRPDMQNGGRLDSSIIKSRSVTCSHCGRVGHEKKDCWQIVGFPEWWTDRNGGGRG
SGSRGRGGRGSGRGRDQSVTAHATSSNPTSLPEFTPAQLQVXAQMIKGQPNNSSSDKLSGKTNLGNVIRDTGASHHMTGT
LSLLSNMVSIPPCAVGFADGSNTMAMSVGVLSLSNDVALVDVLYVPNLTCTLISVSKIVKQIKCIATFTDTYCVLQDRFT
RTLIGSGEERGGVYYLTDVATAKIHTAKISSDQTLWHQRLGHPSFSVLSSLPKFSSTSIPVGSRSCDVCFRAKQTREVFP
LSINKSSECFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRAVWTYLLLAKSEVRYVLMNFMAYTEKQFGKSVKTVQSDN
GTXFMCLAAYFREHGIIHQTSCVGTPQQNGRVERKHRHILNVARALLFQASMPVKFWGEAVLSAAYLINRTPSSLHKGIS
PYEILHGCKPNYDQLRVFGSACYVHRVTRDKDKFGKRSRLYVFVGYPFAQKGWKVFDIDKNEFIITRDVVFQEDVFPYDA
KDDHSSLVPPSPIVCDSDWMITLSLSNRGSSVIFDSNTEFDAGENVISISTPTLPSVFEPESESASVPVSEPDSESAFVP
VSEPESDSASVPVSKPDSDQIEKSVSKPIVPVHTSIPVVTEPSRVADSSAASPLSVTRTPAKTKLKFVPVSTPARATNLI
VQSETPSPPPRQGKRKLIQSVRLQDYVLYNTTCSPINPHALPDSTQQSSSTVLGNSLDSLTNFISDDQFSSGHRAYLTAI
TSTVEPKHFKEAVHIKVWNDAMVKEVDSLEINKTWDIVDLPAGKVAIGSQWVYKTKYNADGSIERYKACLVVLGNKQVAG
EDYNETFAPVVKMTTVRTLLCLVAANQWEVFQMDVNNAFLHGDLEEEVYMQLPPGFRHSHPNKVARLRKSLYGLKQAPRC
WFKKLSDSLLKFGFVQSYDDYSLFSYTKENIELRVLIYVDDLLICGNDGYMIQKFKDYLSRCFSMKDLGKLKYFLGIEVS
RGPDGIFLSQRKYASDIVSDNGLLGTKPAATPLEQNHRLASDDGPLLADPKPYRRLVGRLIYLTHTRPDLCYSVHVLSQF
MQTPREAHWDAALRVVRFLQGTSGQGILLSANSDLTLTVFCDSDWASCPLTRRSLSAFVVLLGGSPISWKTKKQDTVSHS
SAEAEYRAMAAALREIKWLRRLLKELGIEQHAPTRLFCDSKAAIHIAANPVFHERTKHIESDCHSVRDAVRDGIIETQHV
RTTEQLADVLTKALGRLHFLDLVSKLGVRSPPTPT
>ATCopia25#LTR/Copia 14-4226 Wised via estwise with ATCopia47 protein [Arabidopsis thaliana]
MEQSMELYSLPSLNISNCVTVKLTERNYILWKSQFESFLSGQGLLGFVNGAVSAPLSTVPGPQNNGVTEAVSNPEHQAWL
RLDQVVMAWLLGLLSEDILSVVVGSATSHAVWSNLAKHFNRISSSRIFELQRRLHGLXICDQLASVGSPVAEKIKVFAMV
HGLTREYEPLITSLESSLDAFPGPPYEDIVYSLKGFDDRLQRYAVTSDVSPHLAFNTFRSSNRGRGQSSGRGGRNRGRGS
GNFSTRGRGFHQQFSGSSSGDPNTEKPMCQICGKRGHPALQCWHRFDDSYQEESDVAAAAFNALHISEVTDDAGWFPDTG
ATAHITNNAQRLSQSQPYYGTDTVMASDGNFLPITHIGSAKLPSTSGMLPLKDVLVCPDIAKSLLSVSKLTKDYPCCFTF
DSDGVVVKDKATHKVLTLGKTSDGLYTLENPKFQMFYSTRQITTSDEVWHRRLGHPNDQVLQHLSSNKAIKIKKSTNKLC
EPCRLGKSTRXPFFPSAFTASRPLERLHCDLWGPAPVTSVQGFRFYVVFIDNFSRYCWFYLEXKSDFYDIFIKFQSLIEN
QLXTKIGTFQCDGGGEFTSQRFLSHLQESGIQQYILCPHTPQQNGLAERKHRQITEMGLTLLFQSKCPQRFWVEAYFTAN
FLSNLLPTTALDTKASPYEVLFNKAPDYLALRRFGCACFPTLRDYAINKFDPRSLRCIFLGYTEKYKGYRCYYPPTGLVY
ISRHVVFDEASFPFTDTYSNYTNSSNTPLLAAWLKSFPASAPETFTHTSTTAPSISPVESVTVITEPHPQIINAEGENIL
HITATASTDSSPMSDEECSECTASIDLDPIGNSTTSSSPRTEQSEASAAQPTHSPTVVQPIHPMATRSKSGITKPNQRYA
LLTHRVTYPMPKTVTAALKDPYWTEAMKEEIGNCSETNTWSLVPFTPEMHVLGSKWIFRVKLNADGSLDKFKARLVAQGF
NQEEGIDYLETYSPVVRTATVRAVLHLATIMNWELKQMDVKNAFLHGDLTETVYMKQPAGFVDTEKPDHVCLLHKSLYGL
KQSPRAWFDKFSTFLLAFGFIYNFSDPSLFICVRNKNVIMLLLYVDDMVITGNNSQLLTNLLSELNKKFRMKDMGQLHYF
LGIQAHFHEDGLFMSQQKYAEDLLTVAAMSDCSPVATPLPLQLNKVPHQKELFENPTYFRSLAGKLQYLTLTRPDLQFSV
NYVCQKMHEPTVSDFFLLKRILRYIKGTITMGISFNKRTDTKLRAYSDSDWGGCHRTRRSTGGYCTFLGNNLISWSSRKQ
PSVSKSSTEAEYRSMSNTASEITWLVNLLRSLSVPQLETPELFCDNLSAVYLTANPAYHARTKHFGIHYHYVREQVAFGE
LIVNHIPAHLQLADIFTKSLAAAPFESLRFKLGVCFPPTPRLRG
>ATCopia53#LTR/Copia 433-4844 Wised via estwise with ATCopia11 protein [Arabidopsis]
MVCTWITNFVSKDLGSGMVYFYDAHLLWLKLEGRSRQSNLSKIYSVQNQLDRLHQGSLDLSAYYTRLTVTFIRSQCLSWE
ELKNFEELPSCTCGKCTCGSNDRWIQLYEKHNIVRFLMRLNESFIQARRQILMMDPLPEFTNLYNFISQDDQQRSFNSMP
TTEKPVFQASITQQKPKFFNQQGKSRPLCTYCGLLGHTNARCYKLHGYPPGYKVPVGTCYNNDKSRGQPYPHNGIHMVYS
QPPEQMMYSLEKLXDSIYDSIESSYHLQWELIXPIVQANNNAPYALYNQAYNGNSYAPMAQNFAGNHIISDGSSMSAGNV
TSESPTVNHSVNMMNSGRGFLGSSSHGREQVNQMVTQLNTQLQGSPYQVIRPPTVSQNHGSISAQGMSPIPSHYISAFEP
CLIIPQNTWSLDTRASCHICCDLSLFCNVYHIDHTNITLPNNIKISINIAETVKLNDRLILHLVFYVPSFHFNLISVSSL
TKTNKKNSVHFYHKNCFIQDHTHAWTIGRXISPMIFISXIINLHLIHNIMLHHSFNXFATHVASFIVVSPKLWHQRLGHP
SMSRVQALSSNLHIPQKLSEFHCKICHLSKQKCLSFVSNNKIYEEPFPLIHIDVWGPFHITSVKGYRXFLTIVDDCTRMT
WIYFLRLKSDVTTIFPEFLKLVQTQFGCTVKSIRSDNAPELQFKDLLATFGIFHYHSCAYTPQQNYVVERNHQHLLNVAR
SLYFQSNIPLAYWPECVSTAAFLINRTPTPNLEHKSPYEVLYKKLPDYNSLRVFCCLCYASTHQHERHKFTERATSCVFI
GYESGFKGYKILDLESNTVSVTRNVVFHETIFPFIDKHSTQNVSFFDDSVLPISEKQKENRFQIYDYFNVLNLEVCPVIE
PTTVPAHTHTRSLAPLSTTVTNDQFGNDMDNTLMPRKETRAPSYLSQYHCSNVLKEPSSSLHGTAHSLSSHLSYDKLSNE
YRLFCFAIIAEKEPTTFKEAALLQKWLDAMNVELDALVSTSTREICSLHDGKRAIGCKWVFKIKYKSDGTIERYKARLVA
NGYTQQEGVDYIDTFSPIAKLTSVRLILALAAIHNWSISQMDVTNAFLHGDFEEEIYMQLPQGYTPRKGELLPKRPVCRL
VKSLYGLKQASRQWFHKFSGVLIQNGFMQSLFDPTLFVRVREDTFLALLVYVDDIMLVSNKDSAVIEVKQILAKEFKLKD
LGQKRYFLGLEIARSKEGISISQRKYALELLEEFGFLGCKPVPTPMELNLKLSQEDGALLLDASHYRKLIGRLVYLTVTR
PDICFAVNKLNQYMSAPREPHLMAARRILRYLKNDPGQGVFYPASSTLTFRAFADADWSNCPESSISISIVCVFLGDSLI
SWKSKKQDAVSRSLAEAEYRSMXVLSLPDTIFVYYDDESALHIAKNSVFHESTKNFLHDIHVVREKVAVGFIKTLHVDTE
HNIVDLLTKPLTALRFNYLLSKMGLHHLY
>ATCopia52#LTR/Copia 39-4231 [Arabidopsis]
MADPYPFPDNVHVSSSVTLKLNDSNYLLWKTQFESLLSCHKLIGFVNGGITPPPRTLNVVTGDTSVDVANPQYESWFCTD
QLIRSWLFGTLSEEVLGYVHNLQTSRDIWISLAENFNKSSVAREFTLRRTLQLLSKKDKTLSAYCREFIAVCDALSSIGK
PVDESMKIFGFLNGLGREYDPITTVIQSSLSKISPPTFRDVISEVKGFDVKLQSYEESVTANPHMAFNTQRSEYTDNYTS
GNRGKGRGGYGQNRGRSGYSTRGRGFSQHQTNSNNTGERPVCQICGRTGHTALKCYNRFDHNYQSVDTAQAFSSLRVSDS
SGKEWVPDSAATAHVTSSTNNLQAASPYNGSDTVLVGDGAYLPITHVGSTTISSDSGTLPLNEVLVCPDIQKSLLSVSKL
CDDYPCGVYFDANKVCIIDINTQKVVSKGPRSNGLYVLENQEFVAFYSNRQCAASEEIWHHRLGHSNSRILQQLKSSKEI
SFNKSRMSPVCEPCQMGKSSKLQFFSSNSRELDLLGRIHCDLWGPSPVVSKQGFKYYVVFVDDYSRYSWFYPLKAKSDFF
AVFVAFQNLVENQFNTKIKVFQSDGGGEFTSNLMKKHLTDCGIQHRISCPYTPQQNGIAERKHRHFVELGLSMMFHSHTP
LQFWVEAFFTASFLSNMLPSPSLGNVSPLEALLKQKPNYAMLRVFGTACYPCLRPLGEHKFEPRSLQCVFLGYNSQYKGY
RCLYPPTGRVYISRHVIFDEETFPFKQKYQFLVPQYESSLLSAWQSSIPQADQSLIPQAEEGKIESLAKPPSIQKNTIQD
TTTQPAILTEGVLNEEEEEDSFEETETESLNEETHTQNDEAEVTVEEEVQQEPENTHPMTTRSKAGIHKSNTRYALLTSK
FSVEEPKSIDEALNHPGWNNAVNDEMRTIHMLHTWSLVQPTEDMNILGCRWVFKTKLKPDGSVDKLKARLVAKGFHQEEG
LDYLETFSPVVRTATIRLVLDVATAKGWNIKQLDVSNAFLHGELKEPVYMLQPPGFVDQEKPSYVCRLTKALYGLKQAPR
AWFDTISNYLLDFGFSCSKSDPSLFTYHKNGKTLVLLLYVDDILLTGSDHNLLQELLMSLNKRFSMKDLGAPSYFLGVEI
ESSPEGLFLHQTAYAKDILHQAAMSNCNSMPTPLPQHIENLNSDLFPEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRM
HSPTTADFGLLKRILRYVKGTIHLGLHIKKNQNLSLVAYSDSDWAGCKETRRSTTGFCTLLGCNLISWSAKRQETVSKSS
TEAEYRALTAVAQELTWLSFLLRDIGVTQTHPTLVKCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLVETKHIS
ATLQLADIFTKPLPRRAFIDLRIKLGVAEPPTTSLRG
>ATCopia9#LTR/Copia 14-4297 Wised via estwise with ATCopia47 protein [Arabidopsis thaliana]
MDQSMDLYTLPSLNISNCVTVKLTDRNYILWKSQFESFLSGQGLLGFVNGAYAAPTGTVSGPQDAGVTEAIPNPDYQAWF
RSDQVVMSEDILSVVVGSKTSHEVWMNLAKHFNRISSSRIFELQRRLHSLSKEGKTMEEYLRYLKTICDQLASVGSPVAE
KMKIFAMVHGLTREYEPLITSLEGTLDAFPGPSYEDVVYRLKNFDDRLQGYTVTDVSPHLAFNTFRSSNRGRGGRNNRGK
GNFSTRGRGFQQQFSSSSSSVSASEKPMCQICGKRGHYALQCWHRFDDSYQHSEAAAAAFSALHITDVSDDSGWVPDSAA
TAHITNNSSRLQQMQPYLGNDTVMASDGNFLPITHIGSANLPSTSGNLPLKDVLVCPNIAKSLLSVSKLTKDYPCSFTFD
ADGVLVKDKATCKVLTKGSSTSEGLYKLENPKFQMFYSTRQVKATDEVWHMRLGHPNPQVLQLLANKKAIQINKSTSKMC
ESCRLGKSSRLPFIASDFIASRPLERVHCDLWGPAPVSSIQGFQYYVIFIDNRSRFCWFYPLKHKSDFCSLFMKFQSFVE
NLLQTKIGTFQSDGGGEFTSNRFLQHLQESGIQHYISCPHTPQQNGLAERKHRQLTERGLTLMFQSKAPQRFWVEAFFTA
NFLSNLLPTSALDSSTTPYQVLFGKAPDYSALRTFGCACFPTLRAYARNKFDPRSLKCIFLGYTEKYKGYRCFFPPTNRV
YLSRHVLFDESSFPFIDTYTSLQHPSPTPMFDAWLKSFPSSSSPLENDQTAGFNSGASVPVITAQQTQPILSLKDGPNIL
LPEGEITVSSNNQDIEDEPICVTPLQTLSSEDNAKSSETLSMGSEECSECTASFDLDPIGNNALSSSPRHDQLTSSIPRA
ATESTHPMTTRLKKGIIKLNQRYALLTHKVSYPMPKTVTAALKDPKWTAAMIEEMGNCSXTHTWTLVPLQPNMHVLGSKW
VFRVKLNVDGSLDKYKARLVAQGFKQEEGIDYLETYSPVVRSATVRAVLHLSTIMNWELKQMDVKNGFLHGDLTETVYMK
QPAGFIDKAHPDHVCLLHKALYGLKQAPRAWFDKFSKFLLSFGFVCSMSDPSLFVCVKNKDVIMLLLYVDDMVITGNSSK
LLSSLLSELNKQFKMKDLGRLSYFLGIQAQFHSQGLFLSQQKYAEDLLATAAMSNCSPVATPLPLQPERTPNQTELFDNP
SYFRSLAGKLXYLTLTRPDLQFSVNYVCQKMHAPTVSDFHHLKRILRYIRGTTTMGISFNKDTDCQLRAYSDSDHAGCHG
TRRSTGGFCTFLGNNLISWSSRKQDSVAKSSTEAEYRSMSVTASEITWLVNLLRDLGVPQLQLPELFYDNLSAVYLTANP
SFHARTKHFATHYHYVREQVAFGELIVHHIPGYLQLADIFTKSLAKAPFESLRFKLGVDFPPSPSLRG
>CAULIV-1A_SBi_pol#LTR/Caulimovirus 1817-4492 [Sorghum bicolor]
MRRIENNLIILRCKTTTNGYKDYLLSKLYTLPEPNQNFWKEKYISSWPSPSYEKEEAISYQKSDKKKIIRIEGAECCSVL
DAKDQPKNQKGSMNRNLRKFCHQISFRDPFEIKSLQKKCRHKVKIVENILVLSDLDQFLLDTFDIVQNPEEKGFILEKFL
SKVKNNKDESGKVFCSKDKDLKTKGKQQDLDNLSKEYKEIKEELRNLKRKAQILDYQNSDNDEKSNEAQNEDLVGSIERY
FKQKWYAEIQYKFHDGFNFKYKTLIDSGADVNCIREGIIPFKYFEKSSHRVHAANGNLLQASHKIPEVHVCISGVCLKTS
FLLIKNLNQGVILGTPFLSLIRPFFVTEKSIQFTIKGKKVELMFASQPKETLLNHLKEAIRHKEQFIHEIADEIKKVRID
KTLEDPKFKIKIKALEDKFIKDLCSDIPSAFWHRKKHVVTLPYISGFSEDKIPTKARPIQMNSRLLEICKSEINELLKKG
LIRKSSSPWSCAAFYVENAAEKERGVPRLVINYKPLNKVLQWIRYPIPYKHDLIRRIQGSQIYSKFDMKSGFWQIQIKEE
DRYKTAFTTPFGHYEWNVMPFGLKNAPSEFQKIMNEIFLPYTSFIIVYIDDVLIFSQNIDQHWKHLNIFHKIIIQNGLVV
SARKMKLFQTNIQFLGYKIQHDQVLPVTRVIEFADKFPDEIKEKKQLQRFLGCLNYVSDFYERLAKDRKILTERLKKNPP
AWTTRHTQAVKQIKDKVKRLPCLYILDHDALKIIETDASDFGYGGILKQRKDSKEQLVRFASGTWNDAQRNYSTIKKEIL
AIVKVVSKFQGELLNQKFLLRIDCKAAKDVLQKDVENLVSKQIFARWQAILSCFDFDIEHIKGEVNSLPDFLSREFLQGY
GTQKRIIIQREK
>CauliV1_env?#LTR/Caulimovirus 3931-5289 [Vitis vinifera]
MAPKKNTQASSSQKSQSSQANQSPSTHKMLWSQQVEEEEAQLLAKLHSSKPMHESSHMPNKMLTLYYDPSDHSKPIKATQ
YPATSGSQTFKQVTMANPSQKELATSSSFSSKQIVVAANPTPLSTKSRYWQNDLNQSLLVIEREFFSENPREIAAKAFQE
NFHYPSGDILKTREFYEAVLIETGSVKIKHNADKFSNMGLAFSTCHIYKILTVKQWGGNPNLSREFSEPSKPRFFNYWDY
QRAWFNAFLIQNRDFHHSWMFYFPSKNQLSSFPFWFYSWWTYYGPTIKILPKPILDGFELFRSSFNIPRELSAFPPLLFF
FSNFGLAWIVQWDYIIITDESAAFPSLGRTFKTKWWDALKNDASTDAVKQYFLKNPSQVSASDDMSQFLLKKQQLQAMLA
AAKTPQEFQKILDEGSSSFSQENSYAESDDSTSYLPDNGDDCEGILPPIRRSK
>CAULIV-1B_SBi_gagpol#LTR/Caulimovirus 427-5943 [Sorghum bicolor]
MSWLVRTLSASDRSEASCSSDRSVKTMSVKNASSICFEDIEKSIANWKIPKINIREIYHVGTFSLRSDYFIKTIEKTCRI
NTMHETLHLLSEREINDIRAKPQYHYLHFGLVQVAIRSLTRKGLNVSILACLRDCRNKRFQDSLLGMVEASLSNGPVFFN
TFPDFSVSLSDPNINKALTLNLQTSGFDLEPGSENISVTYRIYYKAMTSLAPCAKQYTPKGLSTLLQANPRNNIITPKAL
KWEEIRLPEKWTLTQAVEPQTLEQTEIQSISETPDGDVEVAFSSKRKAFVQSRPSVSIDNRPQMKPQNIVYATYEDNSYE
PSISDFEINVIETDDPELQTYCYIVREKEFQIDKELLRREIALPKNKAKKERYFKNVDQPFRLKIREVWHKEMIEQKKNI
FFFDWYENSQIRHFEEFFKPGSKQKDKIEPESDNEKITMIKKVSKDWKTTSGKQVEAVHPPFEPIQLEAKGESIKACPLK
NISRATYAEPIKVEHIGHLVEQQNYSNISLHALGQQTERIEAILTDGTKPNKSEVKVNLPSSSHSEVPQTQIVIPPFVPQ
MASSNFKLGKQKAMGSSVSEELINELSNKLGNLKVNKNINQITDGESKDVINKIKTFKTTTQTAMTRNYYPRPTYADLQF
EELPHIANMTCFNGKEIVEWNLDGFVEYQIFTMCHQMVMYANACIANGNKEKEAAHMIVIGFSGQLRGWWDHYLSETQRK
SIIEAVKIDENGRPIVLTNDQGQSLGSVSDAISTLLYNIVYHFAGNYQDIYEKNREQLISLRCKTMTDFRWYKDSFLSKL
YTLPDPNQDFWKEKYISGLPPLFAEKVRNSLRKEGEGSINYQNLDIGKITQKIQLVGAELCNDLKIKEQLKKQRAIGKKE
LGEFCYQFGFQDPFESQRRRSHRDHKRNYDDNKKAKHPMRRRHKKKYDTGNVFKNFKKEHKANDLVCFNCGQKGHKSSNC
FKSKVKQEIQALLESDSEDIKGRLGEILNHIQSDDSSEDNTEINCCENNECSCYEQGTSENESDENVLVLTDLEQFVLDT
FDTVQDPEEKEIILEKFLSRVKNNKDKLVNEIQKKKYCSADEVFQRVEDLKRKNKQLSLDDLSKEYNFIKEELIDLKRRI
QILELHKKNDHGEKLIEREPPDDELIGSIERYFKQKWYTELSYEFYDGHKFTYNTLLDSGADVNCIRQDIIPSRYFIKST
HKIHSAEGHLLKVNYKIPEVNICIENIRIKASFVLVENLKQDVILGTPFLSSIRPFMVTDEGIQFHLDGTKIEISFLSKP
EKIRLNQISEESINSISSDDSTGVRFQKGKILHDSSLTLTKRILLMQQKLEMAPLLKYKHLMRMSTWRLPILPDGDRDRF
NHNFEINDLQQGLLNLLWQVKTKKDKAHALNGLAYYFRSMGKIPCIQDNLSDHQKRSSKLSDDDHLEEGSSNLSDSLLMP
GERFPKLYDQNDPNSKLLNHKVCDSETKSSEIFRSPPDDTFPQKDKMSHAEVKNTKDASTQTESILDNPSHHQNYTTIDE
TNLAPLKRHKPGSLPISTPYELLVPKLSFKTEQALSILSQDCINLIWEKYQQRHMNVFHGLQDYFLDLYTGKDTHKGISI
KIHAFPFLHLDDKLIIQPRHKYIILRADINLKYFRSLQTYSAEDISLQTIIDQGLVHAVYGSMEEILHSDLGIAIKEACK
KLYHLKGRFKIMFYSSPPRFTPPLRPATHDVYINKGCYHFPSNTYYDLGQEYEELLSKDTNHDNWRIFNEAKELEENIRF
DPTYHMVFQNKIMRVFLPEPHGSFGPITRCVGRLIKPDYGKETQLRKEYREFMAWQDMWQPDEIDGTEAAPMIDYDEED
>ATCopia8A#LTR/Copia 15-4238 Copia-3_AT product very close. [Arabidopsis thaliana]
MEHRSMELYSVPSLNISNCVTVTLTAKNYILWKSQFESFLDGQGLLGFVTGSIPAPSQTSVVSDIDGSTSASPNPEYYTW
FKTDRVVKSWLLGSFLEDILSVVVNCNTSHEVWISVANHFNRVSSSRLFELQRRLQNVSKRDKSMDEYLKDLKTICDQLA
SVGSPVTEKMKIFAALNGLGREYEPIKTTIENSMDALPGPSLEDVIPKLTGYDDRLQGYLEETAVSPHVAFNITTSDDSN
ASGYFNAYNRGKGKSNRGRNSFSTRGRGFHQQISSTNSSSGSQSGGTSVVCQICGKMGHPALKCWHRFNNSYQYEELPRA
LAAMRITDITDQHGNEWLPDSAATAHVTNSPRSLQQSQPYHGSDAVMVADGNFLPITHTGSTNLASSSGNVPLTDVLVCP
SITKSLLSVSKLTQDYPCTVEFDSDGVRINDKATKKLLIMGSTCDGLYCLKDDSQFKAFFSTRQQSASDEVWHRRLGHPH
PQVLQQLVKTNSISINKTSKSLCEACQLGKSTRLPFVSSSFTSNRPLERVHCDLWGPSPITSVQGFRYYAVFIDHYSRFS
WIYPLKLKSDFYNIFVAFHKLVENQLNHKISVFQCDGGGEFVNHKFLQHLQNHGIQQHISYPHTPQQNGLAERKHRHLVE
LGLSMLFQSKVPLKFWVEAFFTANFLINLLPTSAVEDAISPYEKLHQTTPDYTALRSFGCACFPTMRDYAMNKFDPRSLK
CVFLGYNDKYKGYRCLYPPTGRVYISRHVIFDETAYPFSHHYKHLHSQPTTPLLAAWFKGFESSVSQAPPKVSPAQPPQR
KATLPTPPLFTAADFPPLPRRSPQLSQNSAAALVSQPSTTTINSTHPPAVVNESSERTINFDSASIGDSSHSSQLLVDDT
VEDLMAAPVPTQQAPPPTNTHPMITRAKVGITKPNPRYVFLSHKVTYPEPKTVTAALKHPGWTGAMTEEMGNCSETNTWS
LVPYTPNMHVLGSKWVFRTKLHADGTLNKLKARIVAKCFLQEEGIGYLETYSPVVRTPTVQLVLHLATALNWELKQMDVK
NAFLHGDLNETVYMTQPAGFVDKSKPTHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLILL
LLYVDDMVITGNSSQTLSSLLAALNKEFRMTDMGQLHYFLGIQVQRNQHGLFMSQQKYAEDLLVASAMENCTPLPTPLPV
QLDRVPHQEEPFTDPTYFRSIAGKLQYLTLTRPDIHFAVNFVCQKMHQPTMSDFHLLKRILRYIKGTITMGISYNQNSPT
LLQAYSDSDWGNCKLTRRSVGGLCTFMATNLVSWSSKKHPTVSRSSTEAEYRTLSDAASEILWLSTLLRELGIPLPDTPE
LFCDNLSAVYHTANPAFHAMIDKATKSTNFRVLYPNGDSILTWHENA
>Angela6_TM#LTR/Copia 1229-5197 via tfasty with RIRE1, 2 stopcodons. Angela1_TM and Copia-10_BD more than 80% identical. [Triticum monococcum]
MARAVVPLNFNAFLEKAKLKDDGSNYTDWVRNLRIILIAAQKNYVLEAPLSARPATRATPEVMNVWQSKADDYSIVQCAM
LYGLEPGLQRRFERHGAYEMFQELKLIFQANARIERYEVSNKFYSCKMEENSSVSEHILKMSGYNNHLIQLGVTLPDDCV
IDIILQLLPPSYKSFVMNYNMQAMNKTIPELFAMLKAAEVEIKKEHQVLMVNKTTSFKKKGKGKKKGNSKKNGKQVAAQE
KKPKPGPKPETECFYCKQTGHWKRNCPKYLADKKDGKVNKGICDIHVIDVYLTNARSSTWVFDTGSVANICNSKQGLQNK
RTLAKDEVTMRVGNGSKVDVIAVGTLPLHLPSGLILDLNNCYLVPALSMNIISGSCLMRDGYSFKSENNGCSIYMSNIFY
GHAPLESGLFLLNLDSSNTHIHNVEAKRCRVDNDSATYLWHCRLGHIGVKRMKKLHTDGLLEPLDYESLGVCEPCLIGKM
TKTPFSGTMERATNLLEIIHTDVCGPMNIEARGGYRYFLTFTDDLSRYGYIYLMKHKSETFEKFKEFQSEVENHRNKKIK
FLRSDRGGEYLSYEFGVHLKNCGIISHFTPAGTPQRNGVSERRNRTLLDMVRSMMSLTDLPLSFWGYALETAAFTLNRAP
SKSVETTPYEQWFGKKPKLSFLKVWGCDAYVKKLQPDKLEPKSEKCVFIGYPKETIGYTFYHRSEGKTFVAKFGNFLEKE
FLSKEVSGRKVELDEVTIPTPLLGNSTTQKTVSVRTTPIREEVNDDDHETLDQDTTVPRRSTRARSAPEWYGNPVLEVML
LDHDEPTNYEEAMVSPDSAKWLEAMKLXMGSMYENKVXTLVNLPDDRQAIENKWIFKKKTDADGNITVYKARLVAKGFRQ
VQGVDYDETFSPVAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLEEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQ
ASRSWNKRFDSMIKAFGFIQTFGEACIYKKVSGSSVAFLILYVDDILLIGNDIEFLDSIKGYLNKSFSMKDLGEAAYILG
IKIYRDRSKRLIGLSQSTYLDKILKKFKMDQAKKGFLPVLQGVKLSQTQCPTTAKDRENMKDVPYASAIGSIMYAMLCTR
PDVCLAISLAGRYQSNPGVDHWTAVKNILKYLKRTKDMFLVYGGDKELTVRGYVDASFDTDPDDSKSQTGYVFTLNGGAV
SWCSSKQSVVAGSTCEAEYIAASEAANEGVWMKEFISDLGVIPSASGPMKIFCDNTGAIALAKESRFHKRTKHIKRRFNS
IRDLVQAGDIEICKIHTDLNVADPLTKPLPRAKHDQHQGSMGS
>RTE_BOV_B_AC_1#LINE/RTE-BovB 100-3209 via tfasty with BovB_pol, 1 frameshift and 2 stopcodons, all in first 100 bp: perhaps not coding region, but highly conserved with BovB.  [Anolis carolinensis]
MAERSDxIRSTGEGNGKPPQYSCHENxVDQYNQRNVGIPLEDRTPRSEDGQNATGEEQRISPTSPRCDDAVSSKPEGRLT
ADGAGGEGRIRCSRDQHTIGTWNVRSMSQGKLDVVIGEMSRLKIDILGVSELKWTGMGHFTKDDHQIYYCGQEEQRRNGV
AFIVNNKVAKAVIGYNPKNDRMISIRVQGKPFNITVIQIYAPTTAAEEAELEQFYEDLQHLLDNTPKRDIILITGDWNAK
VGSQMITRITGKHGLGQPNEAGRRLIEFCQENSLCITNTLFQQPKRRLYTWTSPDGQHRNQIDYILCSQRWRTSIQSVKT
RPGADCSSDHELLIAKFRIRLKRMGKIHRPIRYDLTNIPNEYAVEVKNRFQGLDLINRVPEELWTEVHNIVQEAATKYIP
KKKKTKKAKWLSAETLEVAQERRKVKGNSDRGRYAQLNAQFQRLARRDKELFLNKQCMEVEEDNRIGRTRDLFQKIRNIG
GKFQAKMGMIKNKDGKDLTEAEEIKKRWREYTEDLYRRDKNIEDSFDGAVNELEPDILKSEVEWALRSIANNKAAGDDGI
PAELLKILKEDAIKVMHAICQQIWKTQEWPSDWKKSIYIPIPKKGNAKECSNFRTVALISHASKVMLKILQGRLQQYMER
ELPDVQAGFRKGRGTRDQIANIRWIMEEAREFQKNIYFCFIDYSKAFDCVDHNKLWHVLGGMGIPSHLVCLLRNLYKDQV
ATVRTDHGTTDWFKIGKGVRQGCILSPYLFNLYAEHIMRHAGLDESKAGVKISGRNINNLRYADDTTLMAESEEELRSLI
TKVKEESAKAGLQLNVKKTKIMATRPIGNWQIEGEKVEAVTDFIFLGAKITADADCSQEIRRRLLLGRRAMANLDKILKS
RDITLATKVRIVKAMVFPIVTYGCESWTIRKAERRKIDAFELWCWRKILRVPWTARRSNQSILQEIMPDCSLEGRILEAK
LKYFGHIMRRQESLEKSMMLGKMEGKRKRGRPRARWMDGILEVTGSTLKELGMVTADRELWRGLVHEVTKSRKRLND
>RTE-15_SP_pol#LINE/RTE-BovB  Not from imperfect consensus, but from fully intact  gi|72053019|ref|XP_799214.1| PREDICTED: similar to predicted CDS, reverse transcriptase family member (XS300) [Strongylocentrotus purpuratus]
MGCRPISSRLITIRLKASPFNITIIQAYAPTTDYDDDVIEDFYDQVQKVIDQTPKKDIIVVQGDWNAKIGEDASKNWKGT
CGQYCNRKTNERGLRLLEFAKYNLLKVVNTFGPHKPSRRWTWHSPGGQYHNQIDYIMVKGRFQSSANIAKTRSFLGADVG
SDHELVMMTFRLRLQRMKSQGNKRIRFSLEKLKDPNIAEIFQATIGGKFAPLLVLGNQDTEIDTLINKFNTAVTETANDI
LGKHRPTKKPWVTDDILKLCDKRRELKQKKNTDEGVKLYREVNQQLKKGMRKAKEKWIEEQCQDIEENLRKNNSKKAYQL
VKELTCSKQGKTTIIQDKGGKCLTEEQDIRKRWTEYCSELYTHTIIGDPKVLDVPPPTNNDSYPIMRVEVEAAVKSLKKG
KSAGVDNISSELVQAGGEAMIDMLLIICNKIWQTGEWPSPWTQSLIITLPKKGNLQLCQNYRTISPISHPSKFMLRILLN
RLKPQAEEIIKEEQAGFRAGRGTTEQILNLRILCEKYLQHQQNLYHVFVDFKKAFDRVWHAALWATMRLYNINANLIRTI
ECLYDKATSAVLLDNNIGEWFRTTIGVRQGCLLSPTLVNIFLERIIDDALKDHEGTVSIGGWLITNLRFADDIDGLAGQE
QELVNLVNHLEKTSTSYGMQISAEKTRLMTNNTNGINTDVTVKGKKLETVRSFKYLGAIVSDEGSKLEVLSRIAQTTAAV
TKLKTIWTDKNIAISSKIRPMRSLVMSIFVYACETWTITADIGRRIQALEMRCFRKLLGISYRDHITNEVVKNRIENAIG
PYEDLLISVKRRKLKWYGHVTRSSGLAKTILQGTVQGGRRRGRQKKRWDDNIKEWTGLDWNIIRRKAENREEWRKLVVKS
TVVPQRSARLRDR
>RTE_Ele2_pol#LINE/RTE-BovB 334-3354  [Aedes aegypti]
GSIPNFSPTTKNGERRNNERYFRQPTWQRNKDYEWKLGTWNVRTLNEPGRASLLARELQKVGVGVAAIQEVRWPRSGERE
FRAVDPIANTTFKYNIYHSGGDKAEHGVGFIVIGKQMKRVMKWKPISERICVLRIRGKFFNYSLINIYAPTNDKPDDVKD
AFYEGLDKAYGECPKHDVKIVIGDANAQVGREDFFRPIIGKESLHSVTNDNGLRLVTFAAARGMAICSTYFARKDIRKHT
WRHPNGDICNQIDHILVDGRHFSDVIDVRSFRGPNIDSDHYLVVSKIRARLSTVANSRPQRTMRFNIQRFSADGVTAEYH
QKLDERISEVNVSENLNNLWDAIHGVVSETAREVIGTARRRPRSGWFDEECQRVTDEKNVARRRMLVSGTRLNRERYREA
RSAEKRIHRRKKKEFDENVIAEAQNCMEQNDMRRFYETVNGVRRKSAPSPVMCNDREGNLLTDKTMVAARWKEHFETLLN
GGNDRASENRMNIDNDGQAVEPPSLDEVKKAIKELKNNKAAGKDELPAELLKHGSEQLHRIIHHILLRIWEEEELPASWM
DGLICPLFKKGHRLECANYRGITLLNSAYKIMSRILFNRLRPLEESFVGEYQAGFREGRSTSDQMFTLRQILDKFREYNL
QTHHLFIDFKAAYDSVKRNELWEIMMEHGFPTKLIRLIRATLEGSKSSIRVADEISTSFVTLDGLKQGDALSNLLFNIAL
EGAIRRACVHRNGTIITRSYMLLGFADDIDIIGIDRRAVEEAYVPFKRETTRIGLIINTTKTKYMVAGRHRGPIGDVGSE
VVIGGDIFEVVEEFVYLGTLVTCDNDVTREVKRRIAAASRAFYGLRNQLKSRSLQTKTKLALYKTLILPVALYGHESWTL
KEVDRRAFGVFERKVLRTILGGKLDNGIWRRRMNHELYQVYNEMDIVKRIKHGRLRWAGHVARMSEERQAKQIFSREPGR
GRRLRGRPRTRWLFAVEEDLRSLNVQGDWKRLAQDRVQWRRLLHSA
>SjR2_pol#LINE/RTE-BovB  430-3705 gi|19067879|gb|AAK14815.1| polyprotein [Schistosoma japonicum]
MTNTSPVSFSGISTSNILSWCGQPGSDNRPHTSNSIQIHLVRGQIPPSTLNNSLITMPNPSNIILSPCVSNAIGLSSRNV
IPGVLKLRTKLYIGAFNVRTLYQVGQQASLATTLESRSIDICCISETRIQDPSTVIRLTSPCENKEPAQFTLRVSGDPTA
TTRGLAGVGIALSLKAEQALLDWIPIDSRLCAVRLNGTVRTRKDRDTRRCLFVVSAYAPTDCSSDEMKDEFYRKLYDLLC
KAKRTDVVIVAGDFNAQVGRLEETERHLGGSYGVEAQRTDNGDRLLQLCSDKRLFLASTNFKHKERHRLTWRPPKSTQRW
TQIDHIAISHRWRGSIEDCRSFWSTCLDSDHALVRARISLRLTGRKRSTTRIPHRVQFNDEKVKNTFQEQLKNQLVNGVN
CSQPELAWNDIQKAVERAVISTNKLDLKVRKTQWISAASTELIDPRQHIPSGSEHDEQRRQLRHKLIKSLRNDREQWWVA
KAKEMEKAAAIGNSRQLFRLIKETGIRNPTVSETISEKDGSIIHCQSRRLDRWAEHFREQFNWPTASSLLPTIPKQSEWQ
INIGPPSLSEVVKAIGNLKRGRAAGPDGLTPEIFKEGGPVLAARLTEILARIWELDVIPSDWSRTLTIPVFKKGQKSSCD
NYRGISLTNIVSKILASIILRRLTKAHEEQTRENQGGFRPGRGCIDQIFTLRQVLEHRHTFRRPTIAVFLDLKAAFDSID
RKVMWQCLSLKGVPEKYINLIQALYSNTTCRVRAYGRLSSELTTSSGVRQACPLSPFLFNFIIDILLELTLSSSDFPGVD
LFPGDKLTDLEYADDIVLLSEDADKMQDFLTTLNMNVSMLGMRFSPSKCKMLLQDWLNSAPKLVIGRETIECVNRFTYLG
SLISPNGLVSDEISARIHKARSAFANLRHLWRRRDIRLMTKGRVYCAAVRSVLPYGCETWPLRVEDIRRILVFDHRCLRN
IARVCWDNRVSNAWVRNRVLGKYGKSIDEVVNLHRLRWLGHVLRMPDHRLPRRAMLSVVGVGWKKARGGQTKTWHQSMKS
LTIGLSHVNRCRLPGWGPHDDRNKWLETLGDMAQNRLQWRRCIHSLSSSEF
>RTEBovB.4562_Amis#LINE/RTE-BovB 1-2603 via tfasty with RTE-2_CQ_pol, 9 frameshifts and 4 stopcodons. [Crocodylidae]
ETEDTKKDAFYDLLKHMYENIPKNDIKIVLGDCNAKVGREQIYKQMAGTESLHKNSNGNGIRFISFASSKNMIIRRTTFP
HKNIHKSIWMSQDRKTANQIDHILIEKQHRNSIRNIRSFRGANLDTDHFLVGGRIVMRLKVGRNRVLQNMDKFDIEQLKQ
AKVSEQYQVEIKNRFQAFEELSEMNEKMSKNDNEVLSTNNQWNYIKNIIKESTEKTVGIQEKIRRNRxYDNECRQATNKM
KLARQKLLQxNSNQNMGTSLEEYKEIIQETKKVLRNKKYQHLVNQLQDIKEQYRANNVRNFYKGVRNYKQGYQAPTSVID
KNGNLLADKTAIIERWREYFAELLNCPTSTVPVEQETHSSAEPKIEEPSFDRMKTAIAKLKNNKAPGTDGISAEMIKYGG
EELYKQIHKLILLIWKSSVLPDDWREALICSIFKKGSKLECQNxRYSLLTTTYKVFSNILLQHLLPYTEKILREYQCGFC
KNRLTTDQIFSLRQIVEKKWEYNLSIHILFIDFQKAYDSIHRESLWAILAELGILNKLIELIKVCMHESRNRISTYGRKL
DPFPIRTGLRQGDGLSLILFNLALEKVIRSINNMRGGVQLNGEHKVLTYADDIALISENMNDIEALYTQLTNEAKKIGLQ
VNMDKTQYLLVNRTAVNQGPHITINNTNFKQVTHFKYLGSIIAQDGNIKEEIKGRIEAGNRAYFALHKLLSSKLIPRKTK
LQVYKTIIRPCITYGSQTWVLSQANEILLDHFERKILQKIFGAQYDPITQEWYIRTNNELYQLYRDPTLTQEIRAQQLQW
LGHVKRMEVIQTPKRSAPWGTRGEKAPGxPRQRWLDDVVSDLQKLNVDDWRMKAHNRQEWMKIVEAAKGL
>RTE-13_AMi_pol#LINE/RTE-BovB 691-3871 via tfasty with RTE-8_SP_pol, 3 frameshifts and 2 stopcodons. [Crocodylidae]
MISGISFLSGRNNHKNGQKLTIGCWNVRTLLDSKENRACRRTALVAKELHRYQIDIAALSETRLHDSVLREKEYTFYWSG
YKADQNASLRRVGLAIANSIANKLPQQPVSISERLMTLRIPLSHNNFLAIISAYAPTLLAPEEMKTQFYSQLSDTLRNIP
NNDKILLLGDFSARIGDDYTTWNRVMGKFGRGSLNTNGELLLTLCTEFDLAVTNTFFNMPEKWFYSWQHPRSKRWHLLDY
VITRRNDLRDVYITRAMRGAECSTDHQLIRTKLNIRIHTPRQKVAPKPNRCVDVSKLRTEEGRTQLATSTHAALSNCANA
RASGTVDERWGAFRTAVQSTAKEVLGVPTQRNVDWFDANDNIQALLVAHRDHAPSxTEQPLLSLVAAEAFKKSKSEVQKK
LREMEDTWWRNKATELQALADTNNTRGFFQELKSIYGPRRANTCPILSTDGTTLLTEHSMILERWKEHFATLLNRESSAN
DQIVDSIEQRPVRYELEDPPTLEETKNALMEMANGKAAGADEIPAEVLKYGGPTLHKALLDLFTFCWENEALPQDFKDAK
IVTIYKKCKGDRHDCGNYRGISLLSIAGKTLGKLLLKRLQVIADDVLPESQCGFRSSRSTADMIFTLRQLQEKAAEQQMP
LYIAFVDFSKAFDSVGCSALWCLLAKFGCPDKLINLIRCFHDNMQAHVSVGADSSDAFPVAHGVKQGCVLAPTLFTLFLA
GVLEVAARTTTTGVTLTTRFDGRLLNLRRFKAKSKSQQSEVKDLLYADDSAFVALSENDLQHLLNSFAHAASLFGLCINV
KKTKVLYQPPPGRNLSPPSPPEIKLNGSQLNNVKSFCYLGSTITDDTSIDKELSACLKSAASAFGRLQKRLWTNGGVKVS
TKCQVYRAVVLPCLLYSLETCPLYRRHIKKLNCLQQRHLCSIMGIKWSDKITNNEVLxLAAMPSVEAMLARRQMTWVSHV
IRMDNNRLPKRVLYSEFEKGSRKVGRPKLRYKDCIKRHIQSAGLDLMSWEDMAHDRRAWHSATKEAERATEHHRTTLADS
RRECRHQLALARLLNPTCGN
>RTE-5_SP_gag#LINE/RTE-BovB 329-1063  [Strongylocentrotus purpuratus]
MSIANAFDLLEVEGVRDGDVSFRLDDVVQGAMEHIPEGGINRQLVGDVVKAVVAALLPVMQSIAAQVSPKVSVQKVQASL
QKHDVRLDEMEQYSRRDNIVLRGVPEKGRTPMMSSTGIKVVGADISTSHRIGRPQPNRSRPIVARFVRRDLRTDILRNKR
KLRDSQHKDIMVSEHLAPGRAKLLHAVKQDDQVERVWTIDGKVHCILKGDPRKQIIHGPDDLFRRLGWSEDRLKQSGLFT
EVSS
>RTE-4_SP_pol#LINE/RTE-BovB 2-2613 Fragment, via tfasty with BovB_Plat_pol, 3 frameshifts. Replacing the smaller fragment gi|72030844|ref|XP_786555.1)  [Strongylocentrotus purpuratus]
KRRGVGFIIEKATAKCVLGYNPAHPMNISIIQVYAPTADAPEEEIADFYEMVQDVVDSIPRKDFLMILGDWNAKIGKTRE
NLKYIGNYGLGIRNERGDRLEEFCTANDLVIGNTLFQHHKRRLWTWTSPGDRARNQIDYIMVKKRWRTSLQNVKTRPGAD
CGSDHQLLVAKLRLRLKAKKCDSAPTRYDVENIPSQFSVEVKNKFELLLRNDEAEQTPNELWEDMKETVENAAKNHIPKK
RKRKQPWISNQTFDIADDRKRAKAKHNRGEWTRLNKAVTSSVKEDKRKYIEGKCEDLERHKNNSKAAFAIVKEITKKRIP
RLDVINDENGKTLTENEDIKERWVQYSTKLFAAQEQVDTQWEESDEMEPPPLRSEVELAMKQLKDGKSPGFDNLTSEMWK
ATGEEGTDLMWRLCCNIWNSREWPKDWCRAVFIPLPKKGDLKECANHRTISLICHASKILLKVISRRMKIKLQAEISDEQ
AGFREGRGTREQIVNIRNIIEKCREHRHPLYLCFIDYSKAFDCVSHSQLWNTMAKMGFPSHIIELIKNLYHDQEATVRTS
NGNTEWFGIGRGVRQGCILSPNLFNIYSEDIMRNALEGFNGGVKFGGKKITNLRYADDTTLVCSSREELIDLLNRIKQAS
EEKDLLLNTKKTKIMVVDRDNNNTDFTVAGNKIEVVNRFEYLGSIITNKGESTTEIRRRMAMARSTVQNMSHIWKSRGLS
LSLKVRLLQATSFSIATYGSESWAMTKNDRKRVDAFEMWCYRRLLQVSWKDKKTNVWVLEKIGTDLTIRRGIMERKLNYF
GHIVRRSEGVEKQILQGAVEGKRGRGRPPISWTDDIKKVSGQGMKGATQMAGERVAWRALVKTTAALYSAT
>RTE-6_AMi_pol#LINE/RTE-BovB 14-3073[Crocodylidae]
MSNSTHPMLVPSPDKGGGLASGRASSCKNLCQIIMMRIQGTNLARAYPVGNAQDQRPDSVGNGQGLPHQGRVRPKKLVQR
KDLRVVTLSVGSMTGRSGEDLLERRKVHIACVQETKWKGNKAREIGGGFKLFYSGGDRRRNGVGIILCKELKDKVLEVER
KNDRVMRLKLDNGGQLMSVMSMYAPQVGSPVEEKENFWEKVDEVMQRVPDSEVVIVGGDLNGHVGRSRDGYERIHGGHGF
GDLNPEGERIVDFAVSYDLAISNTFFRKREEHLIMYKSGGRETQVDYLLVRKWDWKEVKDCKVIPGEEVTMQHRMVVMDM
RVKGVRHTKYQGVQKIKWWRLRQDNETREAFRARVLEEIQVEEIEDPESWWQEAADKIRKAGKEICGVSSGKMPVGKETW
WWNEEVQEAVREKKEKCKKWKDTGDPLDFEAYKVERKRAKRTVAKAKNAAMDDLYQRLETKEGQKEVYRIAKRRERLTRD
VMHVRMIKDESGRLLTNEEEIKDRWKNYFEDLMNKENPRSLRASATENQGMVTDISRMEVKRALNKMKNGKATGPDDIPV
EVWKVLGEEGIDILWKLFKAIFATEKMPNEWRGSVLVPIFKQKGDVQDCGNYRGVKLMSHTLKAWERVVENRLRTEVVIG
EGQYGFMPGKSTMDPVFAIRQMMEKYREGCKDIHFVFIDLEKAYDHVPREEIWECLRVKEVPEKYVRTIKDMYWKCTTKV
RSSSGETKSFEVKVGVHQGSALSPFLFAVMMDVFTEQIRRRPPWNMMFADDVVICAESLEEVQAGLDQWREVLEGRGMKI
SRSKTEYMHCDFSEVPDVGNVIIDEKHVRKVDKFKYLGSTVQRNAELDEELNHRITAGWTNWKLATGILCDRRVSVKLKG
KVYKTCVHPALLYGAETWPLKKTQERRLNVTEMRMLRWMCGVTKMDKVRNTYIRGSVKVVEASKKVQERRLAWYGHVQRS
PEEYVGKEVTRMALPGRRGRGRPKMRWRDIVERDMREKELEEDTYDRSRWRARIRNSDPV
>RTE-7_PPac_pol#LINE/RTE-BovB 1-2313  [Pristionchus pacificus]
SILNTHFKKRKSQLLTYHSGKHHSQLDYLLVRSKDRRLVKDTKVFPSECVASQHKPVICDVWMMKDDMSGIKKKELMKVE
RRVKWWKLRDKEERDKFAVEVAIRGVLSADPLDASTNVDSLWNTMTGRMIECAREVLGETKGMKRKSDDRWFWSDEEVKK
AVKEKRNAYWQWHRRKSKESWEAYKEKRRDCRRVVAIAKMKTFDDLYEKLNGPDGEKIVYRITKARDKESKDIQEVKSVK
DEMGNILREEKEVKCRWEEYFRELLNVEKGQTRLNEGDKVQGVIPEWNELEVNLALSKCKWGKAMGPDGIPADCWKSIGD
FGVRWLTRLMNRILEDGKMPDAWRKSEIVLIYKGKGDVRECGNYRGIKLLSHSMKLYEKMLDRRLRECVTLNESQFGFIP
ACSTAEPIFALRMLLERHYEFGMPVVAAFLDMEKAYDRTPRRQIWRSLRDRAVPERYIDLIKDTYEGASAMVRTPCGKTN
EIPIQVGVHQGSALSPLLFITVLDSVLEGLICEAPQTMMYADDICIVGTDVKEVENGVRKYQTRLNEAGLTLNTGKTEFI
GFECGNGLMTDVNHTAIKRVEQFKYLGAMITVDGSAEKDIEHRIKCAWMKWRGCGGVMNDRRISLKLKGKVYKSVIRPTL
LYGSEMWPISERQMDKMMVVEMKMLRWACGLNVRDRVRNEAIRAMTKCAKLEGKIRERRLRWFGHVKRREKEHVCRRMMT
YTIRGKRPVGRPKLRWSEMIKQDITQLRLTERHALNRDLWKTKTSFPDPV
>RTE-6_BF_pol#LINE/RTE-BovB 436-3450  [Branchiostoma floridae]
MSSAKHSIGLAQEGNNRGTTAQPAIKLPTEGTVIGTWNVRTLHACGRLEELTHELDRYTWDILGLAEVRWTGFGETTTEE
GHKIWYSGEEKQHRHGVAFIVRNEISNCVISCTPVSSRVISIRISAKPHNITIIQVYAPTTDHEDEQVEQFYEELENTIE
KAPKKDLLVVQGDWNAKVGTDAYQHWAGTVGQYGVGETNDRGLRLLEFAQQQRLTLTNTLFPHKLSRRTTWHAPNGQVHN
QIDYILTPQRFKSSINRARTRTYPGADIGSDHDLVLTTLKLRLKCQRCPRNPRIRFNLEKLKDPEVVEMFQAQIGGKFAA
LNVLDTDVDELAGNIKEVLMSTAEETLGRHRKKNKPWVSDDILDLCDRRRELRQQKYTSQENAEQYRQAHKTVRRKMREA
KEKWIEDQCTEIQHGMASGNSQKAYETLKTLTRTQQPRATVIEDSSGNLLTESTAVLNRWTEYCDKLYNYELQPDTAKLN
NPPWAERVPEDLPILRDEVADAVRNMKPGKSPGIDNIPAELLKHGGEVVVDKYSELCQKIWQEKKWPKEWTQSLVIPLPK
KGNTRQCQNYRTISLISHPSKILLKVILKRLKSKAEELLAEEQAGFRPGRSTTEQIFNCRLIIEKHLQHQRDLFHNFIDF
RKAFDRVWHDGLWWVLRGFGVEEGLIQSIEALYQSASSAVFLNNKVGEFFRTTVGVRQGCLLSPVLFNLYLEKIMQDALY
DHHTSISIGGRRICNLRFADDIDLLAGSNTELQDLTDKLTESTGSFGMEVSTEKSKVMVNSRDETHAVILMNGELLEEVG
TFTYLGGTITKDGTSETDVRRRFAMATSAMARLSRIWKSNNISFSVKFKLYKTLVVSILLYGCETWTLLAATERKIRAFE
MRCLRKLLHISYYEHVTNEYVREQVRSLVGPQETLLATVKRRKLQWFGHVTRHNNLAKTILQGTVEGGRRRGRQRKAWQD
NIADWTGLSLQERITLARDRRTWRQLSIFMSTLSPQRPGGQGTR
>RTE1_Sar_pol#LINE/RTE-RTE 366-3334  [Sorex araneus]
MVTPLRAIGGRPKSLRPSRRARQATESIPPARQSLASYPSRIRYANNSNNNWPHSPVTERAPNTAALRKMSKERLKKSRG
RTRLPKRRKTKMIVCTFNARTLASEASIEDLMVQAQKIKYDIIGLTETRRHQSHHAIFDTGEELFLGTCDNRGVGGVGVL
VNTNLAMSIDSFECLTTRIGRLRLNRCGSLPAVSIFVVYAPTSNYDEEEIERFYMELEKFYKEDHTFYKIIVGDFNAKIG
PRRSPEELHIGTHGLEWNDQGERLSEFIMSTKTIHGNSQFQKAESKRWTWESPGGQFHNEIDHIIFNRRFCLTDVAVVPK
FQTGSDHRLLRAKFYFTERGEKSAKFKSKKATPRMTTNWELFGTIAATWEDAVLDNIDEEYDRLVQHLHVCAKNAESEKA
TNRRLSSETLELIRQRGLARASGNHKLTSELTKLCRDAIKEDLKERRAAVLASAAEAGKSIRNARLSFANYKTKMTALRR
PDGSITSSRKAMEKIIHDFYSDLFDSHVHLPTYQIPQDGYVVPNVLPSEIRHAISLVKTRTAPGPDKVRPEHLKNLPPVL
INTLARLFTRYLSECKVPSQWKTSRTVLLYKKGDIHDIGNYRPICLLSVVYKLFTRVILNRIGRTLDEGQPCEQAGFRRG
FSTIDHIHTVTKLIEVSREFKMPLCLTFIDLKKAFDSVETEAVIEALAKQGVQTQYIKILRELYCGFTTRISPFYKEVII
DVKRGVRQGDTISPKLFSAALENIMRRLEWEGMGVKIDGRQLHHLRFADDIVLITPNISQAAQMLADFDHECGKVGLQLN
LNKTMFMKNELVPEAPFALNGTNISECSSYVYLGREINMRNDLVPELRRRKRAAWNAFKSVEEVVKRTKNLRLRAHLFDS
TVLPALTYASETWALRKQDENAIRVSQRGIERAMLGISRLTQVREGIRSSDLRRRSKIRDAVSFAKASKIRWAGHVMRFR
DDRWTRAVTDWIPRDVRRPRGRPPTRWSD
>RTEX-5_Acar_pol#LINE/RTE-X 2299-5833 via tfasty with L4_pol, 1 frameshift. "possibleLINE1_1" in David Ray's library. [Anolis carolinensis]
MQTTIPSGNCGLKQTSITQFFPSIVSKKKEKVKALKEGNPTYLYKNRVTQSHLNSLGPNNYIKMKTAKELKILSWNIAGW
MGKLVDKEFTEYLQEFSIIMLQETWVEDTPNLTLQGFRSFAVAASRRHKWGRCCGGLAVFVSVEIEAECQIMINHTNNNV
LAVEIKFRDNQVLLCINVYVPPVNSTSSTKEVWRLLDAALGDITADLENTNIVLGGDFNARMGKSNEDLAQHFGLYLENQ
FSLGRNSRDVRINKNGLELFLLAYKHFLLIMNGSYLEESSGLYTYHSARRGSVLDYFIISTGLLPAVKTFKVDMRPESDH
HPIKLIIKTEVEQDSASNNYPLDLVSTGPRRLKWSGPMCEKMLDLLTGPTLETCRDKILKSTIDPIEGYQQIITSLKPHL
IHSDPAKDIKHSKGSWFDAECRSQKKTLVRAIRAANKNGTEQSYKSLSVIRSQYKSLLKKKKFEFNRQNWCKLDLAIRQK
DEGKFWNMVHSGLRSVQPHLDSQISAPTWEAYFGEVFDDPDAAGEVSEPFDAPAWPPVSSEEMEGLLQKLKAGKAPGEDM
LPPELFKCNISWWAPILAKLFTHINQTGIIPSGWKTSIIVPLYKKGNRTDPHNYRPISLLDVVSKIYGSFLLNKLQSWAE
ENNIIAEEQAGFRQGRSTIDQCFVLSHLIQNSLRKPKGCLYTAFVDFTSAFDLIDRQRLWAKLAKTNVDRRLLLLLHQLY
SGTDLRVRLGLSGKLSNNIETKRGVRQGCLLAPFLFIFYVNNLVAELSSPEHFPPAVGNRRIQILLYADDMVLLSSTQIG
LRRLLRSLSRICKQEKLTINHSKTKVMVFSKRKQSHTWKLDGHSIEQCDSFKYLGLHFAYNGKWKNHIEAAKLSAWRSAK
AILAFGKTKGGSLVCPTVKIFAAKILPQLLYGAEIWGQGNTEQVECIQNKFARALLALPSGTPAALLRLELDLPSLKARM
HKLNISYGKRLLGMEEESIAKQCLREQFKRGGWVQSWLALLHQYFDGSITTLMQLDKKAIRDNIFEKDAADNLEISKKQS
FSIWYPRLKSDQYCQQYLQDLTSAELRKAFTALRFQTMPSNWLEGRYRGIPHAQRLCICGAGEKEDLTHYLLHCPLYNDP
RKNLLGTLLEERAAWQEPAVIGALLADYDKNITLKVATFAIAAQKIRDRVAKTSPETR
>RTEX-5_Acar_gag#LINE/RTE-X 285-2222 "possibleLINE1_1" in David Ray's library. [Anolis carolinensis]
MVHTRKNYNEKALPLHSLTTEKKQRQAKLTQFFPKEKTHQGRQEVVDEEVPGNASVDLEVLPAEDMEVWPSNIKGLLLGG
CHAGESGSGRSLAEEMTEFVNPKVAVKQPISWNPASEKHPGPCLKKGHFEPFTPKNSPQQHPQPPQLVFQQGKEGTEGYL
HLESKFNAFSNDLLVIKKYLQESTGLLCTLARLLKAEELSGTCESNMVKPAAIRQDLASSSPKEIRTKQSKLNKTKQVPV
NCKRKKNPRNIKGKLKHKITCKQTGRTRFCKRGLKKLLALIPPSRTSATKKRANKKDPSKWSHSDSKVGKMDRARKIKQG
PQYINVATQTHWEPQDPNTSREKDDRNPKKTVRADGPKSPRTNQQNYRQKTSDREHFGDNWNLVLIPNKIVFIKVPKPGK
LSSPDDRKSHVISLVNTVLPGGLYKTDIDQIDLLYNDPLYADAIVSFTDLNIAKFIIRAKDLFAKKGITITRFFQKIFNQ
GSPEGIMDSEEQLSATTERSEQLQSPLEVQAASSTMEGKNTPGQENLFCPEEQLLVETYVNLPGKEQWAILDRLQALSGH
LREIISKRQYLNDDGQIRARVGQREVQDNIDWLGMRFLNTEERVDPPPNHFPLSPEVIVVKPRTINPCVAHDKDFTIGPW
DTQTGN
>HaTad1-1_BG_gag#LINE/Tad1 138-1790 [Blumeria graminis]
MPPVRKKLPNAMLDNARVRPRAPAKTPGLAQKLSSMFASEAFIEGKSPNLPDKEMTDSEPVRSAKIGPETHTPIELAPET
STSRKGKEVVREKTTEHAETSARKFAVPSSKGTASTSAPEYPPELQSVMEAEKRRTTQITARLAICSTAISSVEAALSPL
SIGDNKEFVDGIKVYLRAAIGQFVQSGPGSTPPVLPARPANPLSPRAPEIRVPNPTKIQAPAPKTTWATVARAGLVSSAG
PSTKKAVPPAQKAKGANTRTAADTRLFLRLARNHPHRLLAPAGVRSAVSEALGTAANDITLVQRVQTGFALTAKNELARK
ELLDSSTSRSVSGIKLEPASNLVAMQIATVPETIRTLDGPIAVTAKMVADEVTRVTKLVPFLVRPHGTCKPGAPYQNWQA
LFPRESTPRPGFRLFDDSGAAKLFQPRRKIVQCNRCLGFHASRGCSRAPACWNCGSKMHSEAECKAPTRCRNCGGPHRSD
SRSCKARPNKSGPVKKEQLAIIRKLEQKNHADYARIKAAAEKTIEEIYGAKNDVCMSDGSGFGILDSEEEV
>Tad1-2_TMe_pol#LINE/Tad1 2533-5607  [Tuber melanosporum]
MATTDIIYHNVGGSMNVVTELLKLSKKRKPKIIAIAECPLENQDWIHLEGFTCYASTKATKYGCAVYILDKYVHMFVVER
ITTQYITLWTGGTEITIGYQRPSAKDFDITNRWHTHGGNNILIGDMNAHHPAWSQGCQNTAGLKLARWMDDRDMAVRNPH
VITHPPNATNPNGTTLDLVATDKGQKIEVRTLDLATASHRALAIKTSFTWRDDGEKPLRHDKADWEAIRAEISLMDDHKD
HPAEVQKELTRIVRRHTPLKKPGCKAFWNKSLQQERKEVLKLAHKHPRHPELKEKKKNLRKAIMEAKLEANGKALQEETD
PECFRTVRPRTTKHPIPALSKENGEVVAEHGDIAQEIHTALYGGERRRAREQINDEPEPLQIETLDAAIKQSPNGAASGP
DNITTRLVKCLRKIREPLFLRMMNRAWKEGIPESWKVSTTILIPKLNKPSYTVAKSWRPIQLQSILAKTLERAAVIRIAR
LEILEDNMFGGRKRYGTTDAIQALNNVMDTTGKAGKCITTLDVQGGFDHLQMGKVCERLGKHSGHLAQWVRHWATDRTTS
YRFNGRTSRGYATDKGTPQGSPLSPILFLISMLETAKVQATPSQKAETKVLMYVDDILVATTYRDAKEGKRMHQETIRGL
ETTAAKDGYEFAPSKAETIFVHTPPQSKFEVRLRGQEIPAQSHLRWLGYFLTDKWKWDHHVRHWINKATSSGHRIRAVTS
RYSKGGLNAGTTLRLIKGLIIPQLTYGIETWGNKGLLREAQAALNKIVRTAFGLEKKTPVLAFLTELGIPPLDLMMQFRQ
NLLALRATTKDRHNTWTKRWMARHGAEDIITTTGNYQLGKDALKNRLQQDWAERVTNEGTRYQGRPGKSHKHLHSLTRQN
FKRLLGLRATAGWPYQEITGARRRCPCDRDIITFDHLANRCGVTTATAIGLYDNKRQGELLQWMDGWPHELKGKPEMTGN
GDGTQQPDAAQVIGANVNLPTSQPTQAPVKPRPRRPCKICGEMVLRDVQHESAHARIHDPARRGR
>I-6_AO_pol#LINE/Tad1 481-4356   gi|83774376|dbj|BAE64500.1 [Aspergillus oryzae]
MTTPNLRLVQLNIWKSRAGMEALINDSQTQNLDILLIQEPPLTAYSTHVNHSAWHLYQSTCQEDTPKKRSLLYVNRRIST
ASHRQIKCNHPDVTAVKMWTMERQMLIFSIYVPTTNHSQPMEEVSIQAMLEEIETCIQQAIETTDKPTTIIMAGDFNRHH
PMWSKNRIYHVAIEHAEELVTFFHKHGLQPCLPRGTPTYWSMSYPGSNSTIDLTVTDTPESLIKCHLYHDHYGSDHRAVY
SEWSLDPSRNAEREPRRAYDRADWKQIGESVQAQIAQTPPIHTEAELEGAVAKLITCTTFAVDQHTPMAKPSPYSKRWFS
PELKEQQREVNRARRKWQESCAEKGRQDPMSLILFGDMRTKRRAWTRAIEKAKATHWKDFLDSAGEGHLWKAASYMRPRE
SYGNIPPLKQDKGETADNTEKARLFMRTFFPRMAPPEDTMEMEQREEIPWTPITEQEVYRALRAAKPMKAPGEDGIPMLV
WRQLWQWLRTEILRIFTASVNLGYYPEKWKRARIVVLRKPGKPDYTLPGAYRPISLLNTLGKVLEAVMAKRLSYYAEEYG
LLPNTQFGGRPGRNPEQALLVLRNAIDRAWLASKVITLVAFDLKGAFNGVSSNILDRQLKAKGIPTKLRAWVASFMEGRS
ASISFDDFESARSLLENAGLAQGSPLSPILFIFFNSNLVNQRVDYHGGASAFIDDYFRWRAGKSAEENIRKLQEEDIPRI
EQWAKLTGSCFAAEKTELIHFTRKKREQTKGRLVIQGATIEPSATAKLLGVVCDQELRWKEHVQQAVNRATKVNIALAGL
RHLRPGQMRQVYQACVTPIMDYASTVWHNPLKDKRHLRVLDTVQRSALIRILSAFRTVATATVEVETYTLPTHLRLKQRA
QRVIVNLCTLPRDHPIQDVISRARRRRDNVGSQPRFPLAESMKTMRLEQLDGLETIDPKPMAPWKPPGFLEIDIEPDREK
AKDKATALQASSNMVVFSDASGQNNQLGAATVILDHNKDVVESRQLSIGSMANWSVYAAELIGIFYAISLVLKIVSSRPR
TPTTSQQEPATILCDSMSALQAIRNPGNKSGQRIIHANLQAAAELKARGIPLRLQWIPGHCDDPGNDAADKLARMAVGLD
KMHPFPRLVSQERASIRKQILKEWEHEWKTCKKGSHLRRIDPKLPAIRTRRLYDSLPRNQAYLLTQLRTGHCWLAPYGKL
HGHREDDKCECGAKETVTHVLLDCSKLRIPRQKLRRELGEAFGDIPAMLGGKGETSHVKAVLDFAEASQRFRSRGPRGPQ
RQNSRQTATTGP
>RTEX-4_VC_pol#LINE/RTE-X 1547-5431  [Volvox carteri]
GLASRGLRILLWNVHGLLEAGVFKLNQAGIRSFVTSHDIVVIAEAHLKDTIEEKDIALEGFRIFRVERSKEALRADYGGV
ALYVRESLTRGITVVRKDNQLPGCEVIWARVSLSTGSSLLMGACYLAPETSRVYPDGGGTVSQRTAAAEAVFTRIQQSLT
ELRLGDEDVLIAGDLNARLSGAQHERNRATPMDLPAYVNDIPDLEQSQAVCEVMGFEGLRDYQNYDGLGNRKCQDQVCNF
FGAQLGALCRSEGLLVMNGRMRGDPEGRLTFPKGEAGGSMIDLFIATPRVLQQYATFLRVGNLIELDGWEPTDHRPLTLV
LNVTVDDESRCRDGKGRKARVEFDIARYQDYAEYFEGGSPTMNALSQVAEDLQRGVCNTTQAVERIGGALYKVLVRAFDT
HRPTGMTAGGNTVWWNRECQQTRQRMLESRAHLGPGRVSNKSGPEWEAFRHARTDYNRAKRHAKAAYEEDRMRDFVAKCR
QDQRALWRALGGKLRERCAIDDIEVFREHFAGLLNAGVGETGPDGANRLLNFINFGQFLEGQEWRSSHSVLGRTAKAAEI
LDPPLTLEEVARAVDRLPNSKAPGLEVAPSECYRYARLPREEEGSASGNGGGRRRGEVNQLVPVLHVLLEHIRATGDFPR
QFTTTVLTPIYKKGDPSMPSNYRGIAVGGALAKCYALVLLDRLVRTGETLSLRHRGQAGFRRGFGTTHHLFAKQYLTTRH
SQPGQRPLIIVQIDFEKAFDKVPREIMWLRLQERGVEGSMLRSLMRAYDKVTMVIKTNGKAGGEFESKQGVKQGCPLSTE
LFGLYIETLADVIDMHDGINTGARPEDAPEVGNERVSILLYADDVSLLATTPGRMGELLNIVDMFCDDFGMRPNVSKCER
LVFASDSDTRSAVQASCDELRLAGEAIPAKDSARYLGLVYGPERQFWACRQQLYDTARAAMFALSAKLDKLKLFAPDVRM
RCFDTQVRAILLYGCQAWGPFMLAEVSDRLRKRSDANNLAEGPFEACLKDRAVQLQISFMRQIVGAARPTHRLLFAELSQ
LPLHYHVLKQVVRFWNHVRLQRGSVAYQVLRQEVAESLSNPEGAGWGTLLLRFLCFLGHDVWKEAPQGLHEVDERVEWLM
NKPMPEGVILEFKDRLMSGWKHTRLDVQPDVYPSDGKQPGIHMAKYKHWMGLAAEQAGRKEVLPHITMFIPRSANRKLMQ
FRLCCWALAANRARKGRRYIPREERVCPCCGTDSHIEDEKHILLDCPVYDEIRSDMGFPRFEHMKDAMKWEPERLARMLE
RIWSHRNSIVPFGR
>RTE-2_NVi_gag#LINE/RTE-X 1-687 via tfasty with CR1-21_HM_gag, 1 stopcodon. [Nasonia vitripennis]
NEKVEEVRRLIEEEKRERMELEERMKRDAEEERRKRKELERKMEERVKVLEDKAEGEKIEKAESGSKGKEEKEMEDKxLK
ELEWRIEEGERERKRNNVVLTGLKEERWDKVKIEGWFKEKLEITVKVKRTWLIRGKATNRIRVECVDREEKEKIMEAKNK
LKGTDLFIDHDTTWIERRNREKLNGLAKEWRSEGKPVKVGRNKLTVGDEEYIWNERKDQLFRKRGRRQE
>RTE-4_BM_pol#LINE/RTE-RTE 1-2712  [Bombyx mori]
VRRMGERIISQPDFLLYHIGTTPGHHGVGFIVKKYLEKSVEEFIGISERIAMMNLKLPGYKDSWSIVQIYSPTEQSDLET
IEEFYLDLNNTIQERGHXNXIVMGDFNGQIGAKRPGEETVLGPFTYSNKIRSRNGELENNLTILNSVYKKNTTKMWTWIS
PDGKTKNEIDFIMTNTKNCFTNFDVINKFNFNTNHKLIRAEIKSVQPKKPRPRQELTIGKLSKHQMAQLVANLRDKFTDF
KKNTNTMGTQEKYNWIENIINDQVQHIDKIRSEPRKWLTSNTMKLLEQRNQLISAKEGKDRRRHLAKISKDIKESIRTDR
KKSRMEIIEKHIAKTGGIKKAHRELTXSNDWIAKIKNNSGEWHHNRTNILGIATSYYKKIYEHNTAQDNIYLAETSSIPN
IIQTEVTKAIDSQHRDKAPGPDGISNEILKESNEIITPVLTDMFNEILKTEIIPRQWTESNILLLYKKGDKYDIGNYRPI
SLMSNIYKVFAKVILNRIEKILDEHQPIEQAGFRKGYSTIDHIHVVRQVMEKYKEHQCTYYIAFIDYSKAFDSLFHEKVW
ESLKEQGIEHKYIRLIKNVYSQNTARIQLEKKGEPFRVGKGVRQGDPLSPKIFSAVLESIFRALNWENLGINVDGVSLTH
LRFADDIVLFAKSSEDITRMINELSTESEKVGLKLNPEKTKIMTNGERIPINLGNNQIDYTDEYIYLGQLITDDNPVLKE
VERRITNGWRRYWGLKEIMKDKNLHMNIKSKLFNTCVLPVLMYGSQTWALSQNTISKLASCQRAMERSMMNVKKSDRLSN
RIIRSKTKVIDIGCKIRRLKWRWAGHMVRGKDKWSKIVTRWYPRESKRKKGRPQKRWDDDIRQVAGVTWNRVAQERHEWK
RLEEAFVDWQTDLQKIRKIQIIG
>RTEX-1_SK_pol#LINE/RTE-X 2620-6057  [Saccoglossus kowalevskii]
MCCQKTRKNINISQRRSLSLSYWNIQSLARKTQENDFIKDINCHDIVGLGETWLDKHSASSFNIPGYYNYSITRNNHTGG
GLTILIKQDIKQGVNIIENTSSEDKFWCKQKKNFFGQLKDTYLCFVYNPPLNSKHCNPDFFEHLEKDISKFSQFGNIVIL
GDFNSRTGMLKDYADFDDTFLPLPFSPDNNDTITVHNNRDTTVNAYGKALIDLCKNCDMRILNGRMPGDSSGNITCYHYN
GVSTVDYALSSCDIIDYFDYFKIHDFTYLSDHCQISCQLKLNKIIKLHKTNNNDLHNLPKSWVWDKLSVFNYQDNLASTH
SQHKINSFLTNKYTLDSKGINDAVNNFNSLITESADRTFNKKSNKSKKQKPKKKKWFDRDCMVLKKDLVKTAQLVNKFPF
DTRLRDLFYRRKKKFKKLIKLKKKQEENLIVNKLINLNNTNPNQFWKVINQLRESTHEQASHISPEEWNRYYSKLNACET
NNNYHNNIISEITSLQNREPLATKLNSTITDEEIKLAIKKLKSKKAAGYDGYCPELLKQSSDFLIKPLQKLYNLILDSGI
YPDIWNISIISHIFKKGDRAEPGNYRGISVSSCVGKTFCVIMNNRIQQFMDKNNILHSNQAGFRKGFRTTDHIFTLKTIV
HKYLKQNGRLYTCFIDFQKAFDTIWRNGLFYKLLNSGIDGKIYNIIKYMYLNTKACIRFGNKTSSVFETTKGVKQGCVIS
PMLFNIYINDLNDVLQDSSIDHVSLNDTKISSLFYADDLVLLSTTNYGLQKALDILSDYCSNWKLSVNLTKTKIVIFRKR
GLKTHDKFLYLGNHINCVNSYNYLGVTMQSNGKFTEARQNMADKANRALYAMLRHIPPECNCKTFIYLFRTCILPVLIYG
SEIWGIEVLDENKWDKTTSEKLHLKFCRNILGLNKFGANLACRAELGCFPLLIDTKKNLIKYWLRIQGLPDKCLTKQAYY
EQMKFNLPWCSSVQNLVIDSRIQTSKTDLNIKNIDKTLKENYITFWKQNVNQENTKLRTYAKFKNTYNFESYLNCLPKKH
QVCMSRFRTSNHCLAIEKGRHTQPKTPIEKRICNLCSQNKIEDEVHFLLECDRYKYIRHELLTEITLTNAGDKLSNFIFL
MSNKDSKAIKCMGTYLLKAMEYRKL
>RTEX-4_ACar_gag#LINE/RTE-X 192-1550  [Anolis carolinensis]
MRRKKRSREAENTAPPSAPTAKXKRIADFCSNRFSVLAXREIGENGGSESLKKHKRSAANNVALTNSNSNNHRSKEDKGI
QTSEQVVETSYSHMLQLVATTVERLHNKLRDINLKVDSIIATQKEIKQQRQTTCDLAPKKLNCKEPTLHLHEVTNSLELV
LSPKKVCLTVYYYRGRLPPWNSTYHSKRHLHHLLKREMNQIDLYSVEMLPSDAHHTRVILSFSSDQIPLLLLRQRSKLAA
KGLFPSRVFHNNRILPLVSRVKHTQQSSGSLKGYTSGMQDLHLGKNPKEHPMDTKSLHEPESADLITLDYETPGNCAALP
SSSVSSAPHSILTTALIEVPPKPYASSGKALCKTTAPPTEASLETGCDNNILMQNEEEDEASILTPIQCPAPWKDGDSTS
IREMPTPKQIKPITEEQYHQQQTCHQPEKIRDLYNNCVFTGEIGGIAQDADIN
>RTEX-2_BF_pol#LINE/RTE-X 3155-6685  [Branchiostoma floridae]
MKVFPGGNKSFCCWNVHGLGSKLDDLDFLSHVNNFDFISLIETWSSDKTKINIPNYSYFHLHREKNKRARRYSGGVIFFF
KDQYKHYVKQLPSKSTDVLWVRVDRKLLGLSKDLFICSVYISPSTSKTHKFAENHVIEILEEEISKYNTEGFILLGGDFN
SRLGNLNDFVEEDTFHENIPNNPSNHNQDRQHMDKAPPNKFGRFLTDLCIQANLRVLNGRVAGDLQGNFTCHQPNGSSTV
DYMIASQPLFEHISLFRVNPLTIFSDHNMLSVIIRTAPFIHNNKTKNNNPNTKPLPKRFRWNENSAQKFLESLSQPHIID
KLNAMSVKETKNAKADIENYVSDLNSVLRDVGHKSLFVRVNKKRSQKARIKKWYDKSCTEMKRELNNLASLLEKNPSNSY
IRGKFFRRKKEYRKLLRKKKRDFQQQIMDQLSSLREKDPNGFWKLINKLKPDKTQQNSQISNEMWLEHFSAVDKRSTDAI
NNSETELSTPVNTQIHPQSPLTPVENSTLDSPITAEELNTAISNLKNNKSSSSDMVTNEMLKCGKQILQNPLLHLFNSCL
QNGYFPDDWSLSHIVPIHKSGDTSLPDNYRGISIISCLGKLFTSILNNRLVNYAEQYSLFKPQQAGFRKNFRTSDNLFVL
TTLVSKYLSKNAKIYACFVDFSKAFDSVWRAGLFFKLNNLGIGGKFLKTLKNMYSKTTNCIKTNGGLTAPFLTNCGVRQG
CNLSPTLFNLFISDITSEFDDICCNSPSLHNRKVPCLLYADDLVLFSESQQGLQSCLVRLERYCKHWNLKVNLKKTKIIV
FTKGGRLPKNCFFLFNGNVIEIVMSYCYLGTVVSTAGTFKANNKHLRNKGLKALFSIRQSLDKADCPLAVKNKLFDSCIK
PILLYGSEIWGTLKSPKNCPIESVHLKHCKYSLNIPKTASNLAAQAELGRYPIHLEASLNTIKYFIRLSKNVPADSLQAD
ALLCQMDLEASGAKCWASDVRNTLEKCGYAFVWQNAQSTISITPQIISSIYQRLKDIYFQTFLYEIHNDKRVATAKNKLR
TYRLLKQYYKEEEYLKIANVRHRSTITKLRISCHKLRIELGRHNHTPLEQRICQFCSLGKVEDEVHFTMDCPLYNSDRNI
LFDYVLSKYPHFRHLNSKEKFTFLTAFDKPTLTNHTASYIYAITKKREEVECHRID
>Copia-2_PR#LTR/Copia 59-4143 via tfasty with Copia-12_PR, 86.4% SW:4742, 1 frameshift and 2 stopcodons. [Phytophthora ramorum]
MTTKRAEVLLGSGNYFHWEYNMRMTLARKGLLAHVQKVKAESEITEAWLVNDAKALGIIAQGVELQHQTKIRSATRAIQA
WGTLREFYNRTTLHNRVTMTRRLHDFKMDDGTSMAKHLDDFDELVVGLQTMGEPVDEARQLVVLLSSLPAEYEMITSIIE
NAKDITLIEVKEKLLKEHERLEKKDLATERAFKVNAGRFKGGKGDGRKWNVSKRNTGEFRGKCFKCNQPGHMKRDCPVRN
TGGDDDAVFAVGTERFNGWLIDSGATAHMTPHRSDLVEYEALDAGMEVTIADGKKLAVAGRGTVRLLGLDQKTIKMVDVL
HIPGLDRRLLSVGKLAERGLNVEFQRSSCVIWGNTSAIALGKKVGKTYVLDCNQEEARFVQYAGADSQWELWHARLGHPN
KDAMVKTQRATNGIPAVEQAFKTLCGGCMKGKQTVASFPKCSGTKTSRVLELVHTDVMGPMKTPSKGSAKYILTFVDDYS
RYVVAYFLKKKSEVAAKIKEFTRFYEKQWGERLMCLRSDNGTEFVNKDVTKFCTLNGIMHQRTVPYSPQQNGVAERMNRT
IMEKARSMLHYKNVPTEWWAEAVSTAVYLINRSTNTHHITVTPHELGFKAKPMLEHLRVFGSHGYAHIDKAKRTKLEPKS
FRCMFLGYAENVKGYRVFDLDASKVKMVRSVQLDEREVDGIYDTQPAQNGTVVHINEATHDVVVPTSLERQTVVEEPMEG
VENDAPDEPMESTELEQDQAPPLLLAEERFAPTGLELAPYRSPSTTFGEDRVVFHQPTSRSRRARDRVFLLEDGADAEEE
RKSEGSDGPSSPKRARIDEDGLIAEAVLAYAASLGDAMDIPTTYAQAMASQDAAQWREAVNVELLSHKRNGTWTLVPRGT
ANRTIGCRWVFAKKRDQYGRVVRYKTRLVAKGFKQKFGIDFFETYSPVANMNSIRVVLSVCAAYEYRMEQLDADTAFLNS
DLTDRVYMDAPFGITNATDYECKLNKAIYGLKQAANAWNKTIHxVFLKNGFKSCGADQCVYVKCSKNGFTYVCLYVDDMI
IAAKTSEEIREVKDALRNAFKMKELGPAKFILGMEIDHDTTAGTLMIKQTRYIDDVVERFGQKHAKPVDNPCAAGLKLSK
SQSPGTESERNAMRSKPYRSLIGCLLYIATCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSTRQHGIIYEGGTG
SVRLTAFSDADWGSNLDDRRSVSGVIVVIGNAPVVFKSKFQRTVALSSAEAExMALSLCVQEVLWTRAMLKDMGAFQRNA
TTIWEDNQGAIALAQNAGYHARTKHVDIRHHFIRENVERGTVTVEYVDTKNQLADILTKALGTKTLKYLRDGNGIKDKIT
VP
>Copia-2_PPa#LTR/Copia 578-4677 via tfasty with TNT1, 1 frameshift. [Physcomitrella patens]
MASSEGESLRVIEKFRGDNFYHWKKKMELLLASLDLWDIVDESEDPPSDNADIKVKKEYKRRERKAFGMIASNLDDANFS
HVIACNGPAEAWKTLCNIYESRNLANILWTRRKFLTVKMEEGDDLMAHVNKVKALANQLAVVDKPVDDKDIVLTLLMSLP
ESYNYLIVALESINMKELTMNYVTSRLAHEVTKRKEKELQSDDSALFSRQGKGSYSHQCDNSKSNMRNCYICGKPGHFAR
NCYKAKKGDRENANNASDSFGGDDYAFMANEGASMAAMSKWIIDSGATKHMTPYKCSFDTYEEIPATKVWLGDNGMVQAI
GIGSIVVEIVVKDQIKRIRLKEVLHVPKMKKNLLSVSKLVSHGCKVQFDQEWMFCKTLDGQHVAKGLRDGNLYFINCKKV
NGVEVAAFADFPQDQDKFGIWHQRLGHLNAKSMKELQSMVSGLDLGQFSHNAMTLACEGCIQGKQQRASFPRGVATRATK
LLEIVHSDVCGPMKTPSIGGARYFVTFIDDFSRKVWIYIIKAKSECFSRFKEFKALVEKQCECKIKVLCTDNGGEYMSKY
FDEFLKIQGIARQSSTPYTPQQNGVAERANRTIVEMARSMLHAQNLGHEYWAEAVVNAVYTRNRCPTSALTSMTPQEAWS
GKKPCVSHMRIFGCIAYAKVPDCMRSKLDAKGTKCVFVGYCEGTKAYRLMCLETKKIIKSRDVEFLEHKSAFEHLEVCPS
GSNGVFVDTSSSSAKKEEEEEDDDDIDDGGNSNQDEEPKKVDHSVPSIARTNNEDNEDVEGDDDDEEYQPLSVKRQALRK
KKDGMQEDESSSSERRYPLRERKQRGEWWKNHIFPQVSEEHANVALLADPLSLCDAMKSTDAMKWENAMEEEYKSLMDNG
TWELTQLPPNRSSIGCKWVFRTKRDAMGNIVRYKSRLVAKGYSQVAGVDFNETFAPVAKFTTIRTIVAIGAAMDLEMHQM
DVKTAFLNGSLKEDIYMDQPQGFVEEGKQHLVCKLKKSLYGLKQSPRAWYQRIDTFFVNEGFVRSEADHSLYVMQSNEFI
LIVILYVDDLIILTNTMKMMDWLKAKLEKEYEMSDLGELHYCLGVEFVRDRAKKTITMSQSKYIEEVLKRFNMEECKPIG
TPLEANLKLMKLTDEEFAEVEGQMQGVPYKAAVGSLMYAMVGTRVDLAYAVSVVSQHMSKAGPIHWTTIKRIMRYLKGTL
NFKLCLGGDNISLHGYCDADWAGDANDRRSTMGYVFFVGVGAISWNCKRQPTIARSTMEAEYMAASHGAMEAIWLRQLLE
DIGVVQMEATPMECDNQGCLAFAKNPKHHSRTKHIDIQHHFIREKIEMGVIDMKYCATEDMLADLLTKALVKDRHHMLTK
ALGLKGI
>Copia-2_RP#LTR/Copia 110-4022 via tfasty with Copia2_Dmoj, 73.1% SW:2505, 4 frameshifts. [Rhodnius prolixus]
MDSRGIIVIDKLLGQSNWKDWKFQVRIQLQCNDAMQAIDGTLLKPTQLPLKATSKDVEEYNKSLIAYNRIEYYAQGLIAS
SVTPEVRKLINMCTTSKHMWDKLRSIYEQRTEQRQDRLFNEFFGIREKDTSDNIAGHIARLEKLWEELKDETWKEDKVKL
PDSLFLNRVLNTLPGQYFEFINAWESVSKKDRTIDLLRERLCTVELRFNERSSVCSGDVQKDSVALVVSKEKNVSKDYRT
SRRGPRCYFCSEFGHVVKYCPNKHGKDAKSDQGARDSAFFGAFEANTSGSDEWFADSGATHHMTMNKNFLFSYQLFPALQ
PVLIGNGQHMMAIGKGNVKVEMQVNQGWKKGTLYDVWLVPDLSKNLFSISSVVSKGLKAVFDSRGCTIMRKNTVAATATR
SNGIFKVDMRVVLPETLLGTSPQANLANKLDSLQVWHERLSHQNKKYVGKFLNENGVNFVDDDFFCEACLYGKQSRMSYG
QRTVKPMKPGELVHADVCGPMPVASLGGSQYFLILKDDYSKYRSVYFLKRKSEVSDKLKIFLAEVRTRGHTLKEVLTDGG
TEFNNGDVKEIIEKAGLSHRVTMPYSPEQCGGAERENRTIVEAARSMIHAKGLPESLWAEAVNTATYVINRTGPTPVDNK
SPYELWFGRKAAISHLKVFGTECFVHVPKQQRKKWDKKSKKGYLVGYCHDKDGFRVWIPQRNDVITSRDVVFKNEETSLC
SAESKILEERLEEETGPDLVYIPVPTMGNVEQVSTVDDEMVEEMSSPKRLRDRTALRKPIHLEDYVSCVEEPLTLEEALE
SEEEPSWREAIKEELASLDENQTWTLVDLPEGRKAIDNRWVFKRKYNSDGTIRHKARLVARGFTQKPGVDYRETFSPVVR
WDTVRAFLSVVESRNFILGQFDIKTAFLNANIDEEIYMRQPKGFSDGSERVCLLEKSLYGLKQASRKWTKGFVDFLENCG
LVCSDEDTCLFISSDHSLILILYVDDGLVAVNKREVLDVFFLKLQKEFKATVSYSVNQFLGMEVSQIQDGSIFISQQTYV
KKVISKFGMVEANPVLTPVDPSHLAEVCTENLDKSYPYRELVGSLIYLSIVTRPDISYVVGVLSQVLDKPKLKHWNMVKR
LLRYIKGTQDFGIHYQQDSNRKLEVYTDADYAGDSGDRRSTTGLFFRYCGGAVSWRSSKQKCIALSTTEAEFIAASSRSK
EAIWLSRLYASLVGSADVPALMIDNQSAIRLIKNPEFHSRTKHIDVRYKFVREKYQEGGLQVQYVPSEYQIADIFTKGLS
RPRFESMRESLGLISKGALSSTF
>Copia-2_SMo#LTR/Copia 63-4229  [Selaginella moellendorffii]
MASSSSSRDMEQFDGTNFLAWKEHAQFWFMRWGLWPVVSGSRKCLSKDDDDTDPYNEWKDLDARANGALGGGLGPLYSVH
VNVEKSSAENWKSICEIMGVDLQEDVDVILHRSELYSLEQQPHERVQDYITRLQRKVVEIRLLDPEATVTDQEFNAVLFK
GLTTRAMKSYLRYIKKIPDITQRQIFAELVQHEKTVIGEGNAAEQDGIAMVTRGNQHGQAGRSSIFNRLGNKRSNSTEEK
PATKQEFNLKCGTCSKRGHLSRDCPVKKQRRETKLKAERGSSSSAAPRFKSRRRDEGDDEDSSAAANGLSWMTRGVEVDT
TSRVLWLDSAATNHSTFDRELFLEMRKCTGQVRLTDNSLLAVEGVGTIEVRLPTGLVVPVKHVWYIPKAQHSLVSLGQMM
EQGFNLEFCGDRVKITHPEVGHVASASKIGRLFRMDCEVCVPGKLLATMTVATASSSSGGAADIQTWHRRLGHVNHKTIQ
QLQRDHVVDGLAITSFSMPLCEPCIMGKQHRRAFNSGGSVRATSPLQLVHSDLCGPFQVMTQRKKRYFISFIDDATRYVA
VKFLATKDEALLAFKAYKHEVENQLDLRIKVLRSDGGGEYVSVNFSDYCEKAGIQRQFTVPYTPELNGVAERFNRTVVEL
ARTMIADAGLPPRFWDHAIATAVFVRNRVLTTAVKSKKCIFLGYSDEQRGYRLLHLDSGKEFVSRDVIFDESRVYFQRHK
DPGVPSTGFLSGDSRASSQPVFFHPWEDEEDNPLPRLGCAYAPAAGGASTSAVTRAPEPDHVPEVVPDPEPEHNIPEPED
MVPEPVRHRDPDVIQVLSRSGRPLTYTAKGEAYQREQAEKRARVAVRASYHQSRTAMFTAAEVKIPVTLAQAKKSPYAAA
WGEAIDAEMRAHAKNETWYLPDEVPHNANVVSTKLLFCVKAGPSGEVQRFKARLVARGFTQIEGIDFTETFSPVVKMASI
RLLLALAAQHDLYVEQVDVKTAFLHGEIPEEVYIQLPTGLDPSQRIYRLKKALYGLKQSPRIWYKKIDSFLISLGFQKNH
ADSNVYMKIEDGALVILALYVDDGIFVSNNRDLLAEIKRKLGAQFEMQDLGPVHTFLGIQVQRPRPGVVTLSQRAYVEDV
LRRFGLENLNPSVTPMQASTHLSAEMSPSEAEKQQMELVPYRQVVGCLIYLAVCTRPDIAYSVGEVAKYMANPGWQHWQA
VKRILRYLRGTANFGLSYQRQVSGHAFILRGYADANYAGDLDDRKSTSGYCFFLGDGVVTWSSKRQAVTALSTTEAEYLA
LTGAAQEASWLRELVASMQLRQQGPTVILSDNQLAIALSENPRYHARTKHIQIKYHYIREQVMGGELILKYVATEDQVAD
IFTKALPPIVFCKHREVLGVCDLSSQGSG
>Copia-2_SCH#LTR/Copia 122-11777 via genewise with Copia-22_DPu, 1 intron (2674:10042) More likely than an intron of course there is a foreign insertion in the element. They are less likely two separately translated proteins: the first 150 AA of the second ORF are not related to copia pols, and the splice continues the homology smoothly from the first ORF  after this point.  [Schizophyllum commune]
MAIENAPGDAKNAPPPDTKATVPTIPLNEVKSVSHFADFKPLDKEKANYKAWRVSIEDALTLVGLRPVALGLIPRPDSDA
AQAAIWDNNDCLARACIRQRLTEAERDHVEDCTTSKDMLETLRKRHRQEGAITQMALLQKTLTARFSKDENILTTARTII
DDVEHILEIGFPTKDSFKVIMLLNAMSGDLEDVRNSLDTLLSSDKLDLSTVMRRLEQMAARSTADKTSAETVLAATGGRS
KGRTRTGPTCGNCGGYHPTPECFSKGGAMEHKRDEKIAELKAKRTAQAGKKGGSSAVTSTPYKGGKRVFDAETGKAFIIV
EEETITAGAALSAGDVTSQEELRALAAADDHAPSDGDSDYSLAFAHSQPAASVDWNDACRISEQAFSAIRPQPTPYFYDS
GTTSHITYDADDFADLKPITPRDVQGVNGSKISAVAIGTAILTDDDGNLIRLTDALYVPEATIRLISVGKLCDRGYVMEF
HDSECSLIDRATGNLVATGTRKAHGLYAHNGGNLLQDERANIARATPTLETWHRRLGHTNVQTIINMAKGNLVEGMPIDL
SLLPPTCSPCIKAKQARTPVPKTRQGPRATRKLDVVAVDLIGEEAVRSIHGNYYSMHIVCEGTSMMWAIPLKTKDEALPR
LQEWEQARKTEAPEESLEVRVYRIDNGELDSKEMRAWLASKGTRLELTAPHTSAHNGIAERAHKTLRGRSRAMRIDAGLP
EFLWDEFFMTAAYLAPLTPCAAQRSKTPYEAYYNRKPDLSRLREIGCRAFVLIQNKHNPKVYERSVECVLIGYCQNSKAY
RLYHRKTRKIVISYHVVFIEAKDELPRPLHPIMKNPERWPRQANVDDVTEMAAQHAQREETHPQTPPVPEELNRALNAAM
AETSAFDAIEDNLEFPDDPKSVREALASDESDQWRQAIHDEISNIKNLGVFKLIPRSEVPRGRRVVKGKMTLRRKRDAEG
RVTRYKARYCYRGDQSIPGKDYGETTSPTARMESFRILAHVSAALDWTGDQHDVTGAYLYGELDGECYMEQPIGFEEEGH
ADWVWALQRPLYGMKQGGRMWYQTLNESMAEFGFTRLPVEYCMYYRTSASGTTLCAIHVDDIASTSSNDTEKALFTAQLR
SKWKITSGPLDFVVGIKVERDRSTRTVALSKTALIDRVLEQFGMKDCNPARTPLEPNTVLTKASSPQTEEERQVAATRPY
RQLTGSLMYISIGTRPDITYAVNQLSKFNNCWGEAHWQAAKHVLRYLKRTREYKLVLGGKHTARLVGYTDADWAKDPDDR
RSVGGYCFSLGQGVVSWKSKKQATVSDSSCVSEYIAAYESAKEAVWLRAILNAIGLPQKSATPIRIDNTAAEQLTGDDTT
FNHHKTRHLDIKYHYSREKVNDGTVVYEHVPGTENTADIFTKALPIPAFEKLRTQLGVVERTNLPEEES
>Copia-2_MLP#LTR/Copia 115-4513 via tfasty with Copia-75_MLP, 87.7% SW:5521, 1 frameshift. [Melampsora larici-populina]
MASSPIDSGSPAQLSPSSDLDQLSDSSDLESSSQSTTRPLSSIMATTNTQEDRINDRIKIPELRDGNFPHWNKRLHFALQ
TRGLSSFLTSDAPPTDPTALLLYRRQQGRVMEIMVESLDTANDSLVKITDTPKIAYETLCKAHGSSGGVLAAAAICEIAT
ARLKPGQSLSDFIIRIRNLHNQLAQYSAEDKEIALSSKLLAIFLLNGLGKEFEFITAPFFADLSNLTVQMVMDRLVIETA
KRSSSGVTSSTNAFTAKVVPPAQTTNRVVRRIGPGPNDVCNLENHRGLPHTNRNCHFQNSTGPKAKAKSSSPNPSSNKLS
ESEMAKRYLEIEAAHLAKKNPPPASAFNVTTSNQFSALELADDFPDKGFAAHAYSAQTDGSSYGSILADTAASRNIVSNK
HMFTTLKAIDSVKINGISNVPQYATHIGTIVIPGFSEVTHQPVDILIPEVLYVPTMTVNLLSLSQLCANGASFSGSDESI
TVVGLPGDAYFICRKTSDDCLWDCEVRIMSSINAYSASAECWHHRLGHLHYDAIKRLAAKGDIKISGSVSSNRSPCNTCQ
KAKISQLPFKSHFPSSSAVLNRIHSDVIGPFPPSLGGAKYLVTFIDDCTRYATIFPIKLKSEVFHCFVNFKTRVELIFES
KIKVFHSDRGGEYQSKEFLSYLTQHGISLEQGPAETPEQNSISERYNRSLIERVRCNLHHASLPTNMWAEIALATTFTLN
HSPHSFLNHETPLTKWNSFLPGKGYHGPDPSFLRTLGCSAVYLAPRITGKLGLKGRNGVLVGYELMAKAYHIWDLLDRKI
VVTRSVLFNEAEFPFVHLPNIVSSPSFIILQDPGSDIPSISTLSSTSTVSNLNHSKDSNSLLSTSDSSSTSTLNVENVSN
SPIHNPVLKTLLLPTLCSPSSSQSPREHSLSPTPIKTRPIGNASKPQRLGNFIAHAGSDMNDEPSYKQAMEASDADEWRK
AMQLEFDSLTQHSVGKLVARPEGARVIGGMWVLKKKRDEKGNVLKYKARWVCFGNRQVEGVDFHDTYSAVGKSDMFRLLV
AIASYLKCLVIQFDIMTAFLHGLMKECVYIQQVKGFVTPGTEGMVVQLGKSLYGTRQGARDFSDDLRRKLKAFGFITSKA
DNCLFIFRRASSFLYLHIHVDDGFLVSNSDNLVEEFRLHLLKSYEVKWKTKPLLHLGMRIQYHQDGAISIDQAHFLQDML
DRFGFNTLNPVKVPLPLGIKLRNGTPEDVAAASYLPYQSLIGSLNWAAISTRPDIAFAVSQLSRYNSCYTFEHWNAAKHL
VRYLKGSISRGIMFKGSMPADLKGYGDADYANDPTDRRSVTGYLFTYGGAILSWRSRCQKSTALSTTEAEYMSISDCARQ
AIWFKTLFHDLNLPVSAVSIASVGNAIQLFNDNRGTVFLCKEPVINNRSKHIDVRYHFIRDHVRLNNIKASHVPTTSMPA
DFLTKPLSVEAFERCCVQVSNVECSS
>Copia-1_Deu#LTR/Copia 79-3896 via tfasty with Copia-1_DYa, 86.0% SW:4375, 3 frameshifts and 2 stopcodons. [Drosophila eugracilis]
MNMSGHGLCSIEKLDEENYAVWSVQMKSILVQSDLWPIVCGRTVKNEGDSQEQNALFDTRDEKALASILLGVKSSQINFI
KNCTSSKEAWEKLMSVYQPRGPARKIALFKRLLRMSLLESTSVQSYISEFSDIVEKLNEIGMNISEDMLTILLLTGLGKS
FEISLVAIETREMLPSLSDLKIKIIEEGQRQQVKSEVADSSVQQAFMSRAKNVYQKGNTKKKKKCYRCGREGHFIAQCKE
ELKNDKDTSTEKKRALAILANVKKTDNLSKSMWCLDSGATVHMCCDKSWFVEMREHKEKIFLAGANFVLADGIGTVCVSV
KSFTIELKNVLYAKELQTNFISVAKAVENGYKVIFDNHKAVIRDKQNVDILKACRYGDLFMIDIKMKQCMYSNTNSSAMW
KWHYRFGHINLSSLTKMASGGMVNGLKTVNTKIDSNSNACETCAKSKISVKPFPKKSESRSEEVLNLIHSDICGPMNKPS
VGGARYFATFIDDHSRYTAVYFLKSRDEILSAFKDYVVFAEKQRGKKVKAIRSDNGREYVSHAFGQFLTENGIVRQLTVP
YTPQQNGVAERANRTLVEMARSMLIHSSADESLWAEAVQTAAYLRNRSETKALCNMTPYEAWVGKKPYVSHLKVFGSKAI
VLNKAHKKKFSQKGNEYVMIGYSATAKAYRLFCPKSRKVIESRDVIFMENNVGGSPSDKMEMALFDDFVADNQQAQDNND
EQPAVSETRGPGRPRLVKTGKPGRPRKQYNCLNMLKAEDIHIPANLGEVNQSGMKQEWSASIQKEMDALEANNTWDLVDL
PQDKRAIGCKWVFGVKVDKEGYVERFKSRLVAKGCAQRYGVDFWETFSPVVRYPSVRMIMALAVEKKLHLHQMDVSTAxL
NSELSEDVYMRQPDGFVSEEFPEKVLKLKKSLYGLKQSGREWNTKLDAVLKKLGFTPCVSEPCVYVRNGQGSINIIAVYV
DDLLLASSNKNELLGIKASIANKFDVVDGGQLNHFLGIEVERDGETGSIAIGHKQYVEQMLHAWGMSTCKPVATPLEAGH
QVKCDDAKCKAIDEKGYQSLIGTLMYLAITTRPDILHSVVKLAQRNANPHKEHEVSAKRVLRYLKGTANMKLHYQATGKE
IHGYVDADWANDTTDRKSYSGYVFIAAGGAISWESKKQSSVALSSTEAEYIALSTGSxRGDISEELLYEMGFLETKSVLL
YCDNQSAQCLAKNPILHKRSKHIDIKFHHVRELYTKNEIDVKYISTNDMVSDVLTKNLQKNKHVKCINEMNCY
>Copia-1_DBi#LTR/Copia 525-4553  [Drosophila biarmipes]
MDKGKRNIKPFDGDKYSIWKFRMRALLEEHDLLKVIDETHEEMTDEIKKAERNAKGLIIEYLSDAFLSFTNSGSTAKQIF
ANLDAIYERRSLASQLSLRKKLLAMKLKGDTSLLNHFNSFDDLITELIASGAKLDDMDKISHLLLTLPPSYDGVITAIET
LSEDNLTLAFVKTRLLDQEIKLKNISKDTSIKVLQAVGKKEFKDIKFKNNPMQKLKKKVFKPSFKTKPKCFHCGKLGHLK
KDCFFLKRQPNQNLNENKRKEGQAQMATAATTQPEHSFAFMLRSETSNSKTNEAEFILDSGASDHLINDTALFSEYDHLE
SNVPIEIAKRGEFIHATAKGVVNITSCGNQITLQNVLYCKDIPHNLLSVKKMQDAGMTIEFNPGGVKVTKDGKLAFNGIC
EYNVPIIKFQLNSKVFSTKISNSTEYRLWHERLGHISVGKFLEIKRNSLFEDTNILSNIDLNHELCEACINGKQSRLKFQ
KFKNKEYITRPLFVVHSDVCGPITPSTIDNKNYYVVFIDQYTHYCVTYLITYKSDVYFCFKDFVAKSEAHFNLKIVNLYI
DNGREYLSNEMRDFCIEKGISYHLTVPHTPELNGVSERMIRTITEKARSMINGAKLNKHFWGEAVLTATYLINRSPSRAL
QKINKTPFEMWHNKKPTLKYLKIFGSTVYALNKVQKRKFDEKSIKAILVGYEPNGYKLWNEESRKFMTARDVVVDEINML
KPRVLHGKDSDVRSNTVEQNNESLTKENEELDFPLVENNESVDSELNEQLNENSTYLENADPVVETGDKLKENEEEEEIR
RSERIKSKPKLSYRFLERCLMNTQICLNDIPNTFDEIKFREDRSFWENAIQDELKSHFQNNTWTLAHKPDNKNIVDCKWV
FSIKQDEFGNLVKYKARLVARGFTQEYMTDYDETFAPVARISSFRFLLALSNQHDLIVHHMDVKTAFLNGTLKDEIYMNV
PKGLNQSYENKVCKLNKAIYGLKQAARCWFEVFESVLKDVGFQNLGVDRCIYILDKGDISRNIYILLYVDDIVIATNKSD
TMSEFKSYLHDKFQMTDLREIRHFIGIKIDRTDGEICLSQSSYIQNVLRKFNMEDCNSVSTPLPNKLDYTALQSEELCDA
PCRNLIGCLMYIMLCTRPDLSTSISILSRYTNNNNKELWQNLKRVLRYLKGTVNLKLRFKKETNFNNILTGYVDSDWAGN
ETDRRSTTGYLFKMFESCLISWSTMKQKSVAASSTEAEYMALFEGVREALWLKSLINEINLKLNGPIEIFEDNQGCISIA
NNPTCHKRTKHIDIKYHFTREQIEKKLICVKYIPTDLQLADILTKPLPTARFISLRSQLGLSE
>Copia-1_DGri#LTR/Copia 107-4091 via tfasty with Copia-6_DWil, 72.1% SW:2702, 2 frameshifts. [Drosophila grimshawi]
AFIKIEPLCAENYDTWKLQMQAVLVKNDLWQYVDGTKTDGNDSAVWKTYDEKARADIVLAIRPSELAVRQLRNCWTKLRE
TFQSRGPVRKASLLKKIALSRLSEDGNARQHVYEFFEAVDQLREIGVTIGDDLLSILLLYSLPESYETFRCAMEARDDLP
RSDVLKVKILEVNARKTKCEREEQNVMFAHRQNGKRDKPTKVRENRKWFTCNKTGHIARNCRNKAKGKGEEPENQRDRAK
RAEEATLACQTNFCVNKVGMWCLDSGCTAHMTSNVDSFENIAMIEKTLHLANNETTQISGVGDVRIAVEKINTKENVTLS
EVLCVPDLRQSLLSIAKITDRGYEVHFRKNDALIMKNNNMVWLRAKRYGNLYYLDSERIQANSIEGRSQKNIDMWHYRMG
HLNEGDLKSMAKSGKVYGMNVKDNEKLSKCEVCISEKQTTKTYKTTTDKRTTDLLEIIHSDVCGPMRKESMSGYRYYVTF
IDDQSRYCEIYFLKQKSEVFKMFKQYKAEVENFTGRKIKALQSDNGTEYCNVEFDSYLKKHGIRRRLSAPYTPQQNGLAE
RQNRTLVEMARCMMRQAGAPPMFWAEAVNTACYIRNRCPTKGLSGGIPYTMWTNKIPTLAHMRTFGTKAFALEKGVKKGK
FDSRSEECILLGYATSSKAYRLYVPERHKVIISNDVKFLDIPGFKTKYEEFYGKEDIDVVITTNEPSEHCEDAMDESEEE
KQELHNPRRGRGRPKTIRTGQRGRPRKLYKEVRCSSSSNDEAGDAKAEDDIIEECEMAFTCVDGPSTLQEAKNSKEADAW
TKAIEDEFLAQVLNETWDLVERPADRKVIGNRMVFRTKDDGSAAGKKKVRLVAKGYAQRPGEDYHDTYSPVVRFTSVRLL
ISLAVEADMEIHQMDVVTAYLNGELEESVFMDIPEGFTDFMEKLESGSPIGTRDTPQGAAYLKAAAAWRKGISKSKNPVC
LIRKALYGLRQSGLRWYHKLTTKLLESGLEPTKQDPCLFVRRQGSKTLLITIYVDDLLLASNDPTWMENIKADLCNAFEM
KDIGKVRTCLGIQFKQSIDKHWIFISQEQYVGAILKKFGMIKCKPALTPIEAKCNLKRPEIIDEGEMRKYPYQSLIGALM
FLSVTTRPDIAFAVSFMSQFNSNYNVEHWKAAKRILRYLSGTKKLGLLYKQTGEDLFGVVDADWGANLSDRRSYSGQAFI
LSGAAVCWEARKQRTVALSSTESEYLAMSEAVKEALYLKALLNSVGKDCATVRLYNDNQSAQKLVTGFGFHPRTKHIDVR
HHFIKQKYLSGDIEVEYMQTEQMPADVLTKGLSGTKHRECISSLGVTYI
>Copia-2_CP#LTR/Copia 97-4103 via tfasty with Copia9-PTR, 1 frameshift. [Carica papaya]
MAEGSSSGFVQPAIPKFDGHYDHWAMMMENFLRSKEYWDLIENGISGESNQQTEKLKDLKAKNYLFQAIDRTILETILNK
DTSKSIWDSMKQKYKGSNKVKRAQLQALRKDFETLRMKEGETVDNLFARTLTIANKMKAHGETMSQTIIIEKILRSMTSK
FDYVVCSIEESNDLDTMTIDELQSSLLVHEQRMNGHREEEQALKVSHEYSYRGRGRDRGSFRGRCRGRGRGAQQFNKATV
ECFNCHNLGHFQYECPQRDIGANYAELNEEEELLLMSYVELNQAQREEIWFLDSGCSNHMSGNKEWFSDLDVHFRQTVKL
GDNSRMSVMGKGNIRMQVKGITQVISEVYYIPELKNNLLSMGQLQEKGVSILIQHGKCKVFHPSKGLIIESEMSANRMFV
LLANMKPEVTTCFQAVIRNENYLWHRRFGHLSFKGLKTLQNKRMVNGLPSLTEPQKLCITCLAGKQHKEAIPKRSLWRAT
QKLQLVHADICGPIKPTSNSNKRYFLSFIDDFSRKTWIYFLHEKSEALTVFKRFKAHVEKEADVFLKCLRTDKGGEFTSI
DFEAFCKENGISRQLTAAYTPQQNGVAERKNRTVMNMVRCILTEKQVPKIFWPEATKWCVHVLNRCPTLAVKDRTPEEAW
SGVKPTIQHFRVFGCLAHVHVPDQKRIKLDDKSFKCVLLGVSDELKAYRLYDPISKKIVVSKDVIFEENEKWNWNMSKEE
KALDLLDWGDIEEGDAVENGTPGVEENRITQADSSGTSLSSLNQATGSCSSTPSSNDTDDGNSQSQVQGRERRAPHWMQN
YESGEGLSEEEEDLSAMTVLIEGDPITFEEAVKSKKWRDAMNSKIAAIERNKTWNLTDLPEGVKPIGVKWVFKTKLNENG
AINKYKARLVAKGYAQQYGFDYTEVYAPVARLDTIRLIIAIAAREGWNIFQLDVKSAFLHGELNEEVYVLQPQGYEKKGE
EDKVYKLNKALYGLKQAPRAWYNKIEAHFVKEGFDKCHHEHTLFTKTTGGGKLLIVSLYVDDLIFTGNDSNLCEEFKKSM
MIEFDMTDLGKMRYFLGIEVLQHSDGIYICQRKYAHEVLERFGMDRSNFVKNPIVPGCKLSKDEKGTEVDSSLFKQVVGS
LMYLTATRPDLMYGVSLISRFMSCPTEQHWLAAKRMLRYLKGTTDLGILYKKGRNKQLTGYSDSDFAGDLNDRKSTTGYV
FMLSSGAVSWSSKKQPVVSLSSTEAEYIAAASCACQCIWLRRILAKLGFIQEQSTIILCDNSSTIKLSKNPVLHGRSKHI
DIRFHFLRELVRDGVVDLRHCNTQDQAADILTKPLKLEVFLKLRKLLGICEVPTLN
>Copia-1_HS#LTR/Copia 200-4585 [Hydractinia symbiolongicarpus]
MATTTLKAPPAFKEDDDYSSWKNDLEIWQMFTELPKKKQGPAVYLSLTGRAREAVRDLTPAEVGSDDGLDKIISKLDSIY
LKDESTRAFIAFKEFYDYKRNSGDKFPDFIVQFEKLYNKISKYDMALPEAVRAYFLLTAANMSEENEKLARTTCAELKYK
NMKDTIMKIFGELNTAEDAAHLGALPVKQECLYGNLHADTKDSLSRNTRSRMNPVDKDGKLMRCHECDSTRHFANKCPHR
NQEQRGFRSRNNRPTEKKQDLNEIHITLFAASPDQRQYCLVGESFGRGVLDSGCTKTVAGEKWMDEYLGTLSESDKNAVV
SNSTDSIYRFGDGKEVKATRNLIIPVILGGNKYKLSVDIVEIEIPLLISRSTMKSLSMKLDFTSDLALIGKERINLICTT
TGHYCLPLTHCDLDAQKGTKIILHGENLKNISKTEKMKKAMKLHRQFAHAGKDKLLKLVKDSNLYDKEFLSCIEECCNDC
EICHKYKRPYSRPVVGIPLANTFNQVICMDLKVYEHNKQHILHIIDAATRYSAGCLIKSKHKDVIVSRVFRFWIAYFGSP
STILTDNGGEFSNEVLQEMNEKLNIETKTTAGESPFSNGIVERHNKILAETMFKTIEDTKCEPDVALAWALSAKNSLQNH
GGYSPNQLVFGHNVNTPTILTDHLPALEPTTSSEIVRKNLSALHKARENFIKAESSERIKRALRHNIRTYSDETYLNGEK
VFYKRKNTKGWKGPGVVLGQDGQMVLVRHGGNFYRVHPCQLMKHSQNCKVSEFKSDHVKRKESHLNKLCDMNDSVNDCDN
DDDDDDDDGGDDYDNDDDDDDDTADKNVIDVYDDSEDVEQYHQEQARNVDENDQEDSGTSENEVEENRDTHKNNETEEDE
GSGCTSDIFRRPSTESKKVESKPKAKSYIKYNLNGRWYHARVLSAQPKRSGTYKNWVNVSNDGDRKPKSINWNDVSKWVE
LENPEFPVYMCDVDMFSQEVVDAKERELQNLKENDVFEEVPDTGQTTVSSKWVITEKFKGEKRVVKARLVARGFEENSQS
LRTDSPTCGKQSLRLAMAIIVSNDWQINSLDITAAFLQGDAIERELFLQPPKDTLSLGTVWKLKRCLYGLNDASRAWYKR
VRSEMLKLGGEMCTYDPAVFYWYRVKQITGILVCHVDDFVYGGSPAFHKEVIAKLLETFKISTQSSSTFKYLGLDVDQFK
SKIKINQVSYIESLITVNIENDVNNERKLTSKEKTMLRSLSGQIAWVAGQTRPDVAYDSCQMSNYGKEPTVQNLKDANKI
IRKIKSKHVAITIAKIANMKNCEIICYTDATHASLKCGSSQGAFIIFVKHLSEVIPICWQSKKLQRVTKSPIAMETLALS
EGADASFYLANVIQQICKLTKVPKITCIIDNKSLFETLKTTNVTKDLRLRVDIARLRQMVEQDEITVKWVEGKHQLADFL
TKHGASPNKLLEVLETSKISLQ
>Copia-3_GA#LTR/Copia 105-4121  [Gasterosteus aculeatus]
MSRRAYESSGRWSRLVFDGDERNYELWETKFLGHLRLQGLKDIIINEPDGGDDEEEDKNAEAYAELIQFLDDKSLSLVMR
DAADNGRGALKILRDYYAGKGKPRVISLYTELTSLQKLSTESVTEYVIRAETTITALRNAGETLSDGLLVAMILKGLPES
YGPFAVHVTQSDANTSFAEFKTKLRSYEATEKMRTTESGDNVMKAKMQPASTSRPTSDHGTESADIVCYRCGLKGHKARS
CQRKQWCSYCKSATHRDVTCRRRYQQDDAHKVSEEERDNEYAFRVSDTDEVKQGARSANKKGLMVDTGATSHIINDISKF
RNFDDTFQPLKHCVELANGEKTNGVAERRGDAEVCLIDSRGQHQNATLKRALYIPSYPQDIFSVKAATVSGATVVFKQGE
DALICRDGARFNVHEYNRLYYLHTVNGECEDQCKGVYDMQTWHEILGHCNYDDVQKLQHVVDGMTIKGKTDMSALHCEVC
TQGKFTQTRNREADVRAKAPLELVHTDVAGPIDPVSRDGYRYALSFTDDFSSAVFVYFLKNKNDTVQATENFLADTAPYG
KIKCIRSDNGTEFTGKHYQALLSRNGIRHETSAPYSPHQNGTAERNWRTLFDMARCLLLDSKLPKELWTYAVQTAAVLRN
RCFNNRTKQTPYSLIKGKQPNMSRMQKFGSECYAYKQDKRQLDARCEKGFFVGYDKNSPAYMVYFSDTGKVQKHRLVKFV
NKTNTEKQTQTDMTPVDDDFELQHRVTSKNTDVSPAHTQDQVPVPMLEVHNHTQTLEQKRYPSRERKKPEYLSEYVSGDE
ESDDQVLTNIDYCYRVASNVPLTLREAVTSPQSEEWVNAMDEELQSLKENDTFTLTNLPEDRKAVGGRWVYAIKNNADGS
EKYKARYVAKGYSQRKGVDYEETFSPTANLTSIRVLMQKAVQEDLILHQMDVKTAYLHAPIDVDIYMEQPEGYEVKSGTD
TKLVCKLKRSLYGLKQSGRNWNKLLHEYLSENNFVQNPSDHCVYAKETEKEKVIILIWVDDIIIGASDENALKVVKEMLS
ARFKMKDLGKLRHFLGIVFDQSDGCVKMSQKRCVENILERFNMQDCKPRTTPCERKLNYTNDAQVMSDVKKYREAVGSLI
YLATCTRPDLSFVVSKLSQYFTEPTEEQWTTVKHVMRYLKGTSEKEMCFTKTPNEKLQLHAYSDADWAADTTDRRSTTGY
CVSLNENGPLISWKTKKQPTVALSTCEAEYMALASTTQEVLYLVQLLDGIDRHQYPVPKVYEDNQGAIALAKNPVNRQRC
KHVDIKYHFVRSTVSDGKISLNFCPTEEMVADVMTKPVTQFKLTKFAKFMFGKLTTYVK
>Copia-6_MLP#LTR/Copia 279-4604 via tfasty with Copia-75_MLP, 62.8% SW:1893, 1 stopcodon. [Melampsora larici-populina]
PSDSTESSVSQPTSNPPSGTETKLTQSIMTTVASATHTSHSSHLLGCIPKLGDTNKVDWTIGIKTYLRSRKLWKYVERDI
KLSGSDLKDPDKVETLEAERAGVLEVIRATVLPTRLPLICGIEDPKRAYEVLLEQVSQDDGLEIATLIAKVANTRYTGNE
SVSSFLDGINDLHTRLAEATSSDNDLKISDKLLAVFLLLSFPGDQFGTIRDQLFGDMKNLSTSKVMSRLRTKSALSTVDE
VTIAMNAMAKPFHAPNKPNSAQPNPYRTNKSPNAPCILREHWQFNHTNGSCSKQIQRRMGNAGNQIIRPRNNAATNGNVS
DAEKIKRYNQLTAAGVFGYNTTVPDSAPNPPAVSTPTADDNGPTCQFATSYNVVAIDADPNEASVNLSQTYPQASEVHRP
TLADTACNRHMFGDAMLLDDLHEVAPVWINVANANQSSRIMANRMGIARLSAIDNKGLSVVVDIPNVLYSPDLPANLISI
TSLYEAGYKIVDPYYGTNVSDVNLYLSKDDHIIPAFKDDGPGGFWRFYHHSEPRAYSTVSSPSPDPNLWHLRFGHLNHRS
TRDIMEDVVRFNPNIPSNCEACTLGKQARSSHSGKLPRSQVPMYRIHCDLAGPFPAQSTGGYLYTMVLIDDATRKNWIML
LKCKSHALNVFKQFHKMILNQTPYPIAVFKSDRGGEFTSTEFSNYLAEHGIVREMGPPESPQQNSVVERFNRTASERLRT
QLLHGNLPVRLWGEVMLATSFILNLCPSKSIDFKCPEEAWQKLALQIKVPQLPFSRLRPVGCLAYTIPPGHRDKLAPRSI
KAIMIGYEKNSNAYxLWNPKEQRIMISNDVTFDEMKFPLSEKSNNDTEELAILNDESWDEIWDCNARTASETSPTTTFVQ
PTRPRRNVQPIDRLGDFIGYHTVADLNQPIYVSIDDGPENDEPNYSQAMKSPNREAWLDAMSREYTSLQAHNVGTLIEKP
EGANVLPGMWRLKRKRDEFQRITTYKARWVAGGNHQIKGVDFDSTWASVGMTDTLRTLYSMAATEDLEMEQFDIETAFLN
GSMKHKVYMRQVTGFRDLTKPGHIVLLNASLYGTCQAHREFNDDFNKKMKIMGFKVCPVDNSLYSLRSGKSFIHIPMHVD
DGMVFSNDKKMLASFRETLKTHYKFQWNENPTLHLGVHITRNRSKRTITIDQQHYCDNILERFGLSNCNGVKTPLPTNIH
LSTPIQDESEEIEDYRAAVGMLNFLSVQTRPDIGFAVGYLARFNSRHNKTHWSAVKHLTRYIKATSHYGIMFGNGETKKI
IEGFADADYAGDLDTRRSTTGFVFYVYGSVVSWKSRRQQSVTLSTTEAEYMAIGDCAKHGLWLCWLLEYLIEGANLSVPV
LLPLSNDNQGAVFLCNEASVNNRSKHIDIRHHFIRELIREGKITVSHVSTKEMPADILTKSVGSQILSSCNEKLGLNTKK
SS
>Copia-5_SL#LTR/Copia 135-4332 via tfasty with Copia-87_Mad, 66.7% SW:2408, 1 frameshift and 4 stopcodons. [Solanum lycopersicum]
SGVKLLLRHLHALIPEKLSDINYPTWKITVLTAIEANYLLKYIDGSTEPPPAVITATDKSEKTNPVHAAWKAVDGQIRSC
LIAVISPTVQKHVRSYTTASALWTALATRYASISHSHNFQLCDRLHTITKDTKIMEEYLDEVSTIITALDTVNEIIPEKD
LIMCVVRGLPSAYSSIKQAVRISPTPVDLATLSSWLKSEEINVDLESKLLLxETAVMEPATALTASKNYMGGRCGGRHGS
RGGYDRNSRSRGRGGRQGSPPPYDGPQHGSNNSLHSFGSGGQSSSSGGQGTNERDRLTCEIYQKIGHTAVHCWFRYEESR
NSYNRVNYASQAGPSSEWLLDTRVNIHVTSDLAKLNAPNPYYGSNGITVGNGKSLNISHTGTGTIKTPTAIFHLGNLTHV
PSIKTNLLSVHQFTKDNNCSLLFTSNDFQILDNTTKRVIFQGSCEHGLYVLPGTSSSAHPVSESVPVAPVALSAYGHSLL
WHSRLGHPFTQIINSLMSQLGFSSIHVNNCDSCSIAKSHKLSFSLFEKRTTAPFQLIHSNLWSPTAVPSFAGFRYYICFV
DDFTKYTWLYPLKHKSQAYTTFVTFEKMIKTQFNSHVKLFRSDNEKEYVNNIFGQFLQSLGIIHQTSCPYTPEQNGVAER
KHLHLIETVVTLLHQSLPISFWVEALATANYLINRIPSHTLSNKSPYQLLYLELPNYTILRVFGCLAYPWLRPHINHKLQ
PRSHPCNFLGYHPTSKGYRCLHPxTHKVYISRHVKFVENEFPYESISSSTNTSFIGVLPLFPTYSQGPSSPSPTPPPTTQ
SPLITPSTVTHNTPATTTHTHNQPKPPHTHNISSPIHFGSFPATPESPPPVPPPPNTHPMLTRGKVGIFKPKNIQATILP
NTPIPHSEPTTYSVASKNAYWRHAMDDEFKALTDQKTWVLVPKPHGRHPVGFKWVYKIKHNADGSISRYKARLVAKGYNQ
EYGLDYSDIFSPIIRQETIHLVLSLAVRNNWLINQLDVSNAFFHGMLYETIYMTxPAGYVDPRFPQHVCKLQKSLYGLKQ
APRAWYTHLKTFFQGLGFTCCVHDMSLFTRHSALGTVILLVYVDDIIITGSTAALIQDVTRAMHTTFKMKDLGQLHYFLG
MEVSRTGSGLFLHQSNYARDLLQKATLEKCTSQQTPMAVSSSTNGADTPFAHITHFRSLIGALQYLAITRPNIQCAVNRV
AQHMHQPSEHDYHCLKCILRYIFGTLGRGLLIRPGDLELRRFSDSDWVNNKNDRKSTSGFLLFLGPNLISWCTKKxPKVS
RSSTEAKYRVLAFPAAETMWVTYILRKLRVTHTLPALYCDKKSTICVAKNSVLLTRMKNVDTDCLFVRDEVQAGTMTVQY
VPTEQQPADILTKPLPSRQHDYLSSKLPFASVQLSLRGG
>Copia-6_Trm#LTR/Copia 634-5043 59.8% sim to Copia-16_Mad, SW:1232, [Tremella mesenterica]
MSDELSSLNKLVPTLTGTETFIRWRRALQAYLLSKNALNNLLGYELEPHRAFIDPAIPGHTDIIHPPGQYAGLVPPDATN
STNGTALTVAQKNTWDNWAKQERIARSFIILSISPGIASDVENLWSAHDIWLRISSTHQVQTTSRRNDLNQRIALLKLPE
NASHEQMVQHLETYTGLIAEAIGAGSTLSNEDRTERFLLTFGEDLQPFCMQWDLRAPEQRNWEHLLTAYRSIADSRRLRQ
QLQASVNAVRSVNSVVANKDAIKPPRGNGGKGKGKTSTGKEKPKGNGGKGKRNMNLKCGWCGYRGHEEKDCNGKERGDPS
KAQLLEAAKKLKEKGTINNIARSSSPEIFGSVSAISAEYLLSPLTAAKPLTFLLDTGATHHIVSNPRLLTDLITLSRPRI
FQLAKTGRTITANQVGKLRIPTLDGQKLFLNDVHLMPDTGLNILSEGQLTKQGWNVDLKNLKLSYSRYVLHIHRKGVLPW
VNITQGSTTSSTSTPLSINAVTRVQSPLFQEHCRLGHIHPDKILELAKDWPNYETLKSDEFKLSDCDTCQRQKATVLSKP
GHSERGTEEGEIVHVDLAGPVLPSQEGNSYFLGIVADWSKVKCAVPIRTKSAAFDQLKAFIIRLERQLGIKVKIVRSDRG
SEFDSNIAKAWYESTGIIHQQTPRYVHEHAGVIERFNRTIKEMISAMLDQTPLGHAYWDYAAIYACTILNKTTIGGNGKS
AWTTITGRQTNLESIREFGELCYAFLPYEIRDKSQLGTPKAQLARILGQVSDTSGYVVRFENTGTTQISRDIRTATGMDI
NTPLMVPIPSAPPREVARPKPTPPTAPNPTPTVTASVPTPAVPAEPKQPLTIRLTLPSPVQPVVPPTVEQRGSETGERLR
QGTPIPPQESAPQTSPAPSLHPSRPPPREGTRRSSRLLTAIDYEQDTDHLNNSEFLLFVSSNHNNPTSLGEAMTLPDNKE
WWTAVQKEIDNLQGKGTWSEVKLPAGRKTVGSKWVFNRKTNADGEIVKYKARLVAKGYSQQQGIDYLETFAPVSRHTSLR
ILLTLAAVHDLEVHQADVEGAYLNGKLDVELYLEIPDGVTTSKPKYNALRLHKTIYGLKQSGRAWWQALGDVLSEMGFKR
SNSDWGLYTLFNSNGSPAIMMLVYVDDLIIASQSTADINSVLDRLGEKWIISKLGPIQHILGMKVQRDRKNRKLWITQGG
YIDKLISRFPDFNPSSARRAPLPTESPKESTKPTSQRNYQELVGSILWLSSCTRPDISYAASFLGRYSSDPQDVHWQMGL
RLISYLSHSRDIGLTLGGAKSPRNLQCYVDSDWGGCKDTRKSTTGYVMYLHGSPISWSSRRQTTVSTSSMEAEYVAYAEA
TQEILWLRTLLREIGQGSLVSSPTVMHVDNQSAIKFSGNPITHARTKHIDIKHHLVRERVESKDIQLEYIHTSKQRADIF
TKPLSGTTHHIQTVFLRLEHTKGIQTVKKT
>Copia-7_LBS#LTR/Copia 171-4672 via tfasty with Copia-3_PSH, 66.6% SW:2664, 1 frameshift. [Laccaria bicolor]
MDTDTSRKSPLAKLGIISYNEWESAMYGRMMYLGVSRIINGKETVISDPGSSSDVTSASMAAYNAYATRCEKAAGEIYQW
LDEANKVHVLSIREDPKAMWDKLALIHNKSAPNSRFNSLSDLFSIRLKEDETLTQLTARVEGAMQTVVNLRPKEPPYTLS
LLDEELAIMAMIRALPREDYNPFISSVLLLSTLTKDAVLEAFRVEETQRRGTQAEIEAAAVIAAAAAARDIKCHWCGGPH
MQRECASYIEARSSAQKLPASGGKKKNRGGRGAGRGANRDSANASKVEEGCDGVSVKAESAVCISASTKASADTHWNADS
GATAHMTPHRNWISSDFKPWRVPVHIANGHIVYSTGKGSVHFRPSGRQSNGRALEDLIITDVLHVPDLANNLLSVLTLTT
KRAFTVVIRGSKLSFIRKHKTLFTATVDSSTTAYLDGTVVVPNISSNISAVRGAVIDRNLLHKRLCHLGHDRLERFIDED
LASDTVLTSDAPLDNICESCIAGKQHRHPFPHTADRATGALDRIFSDVHGPMSVRNRSGKRYWVTFIDDAFRWMEVYDIA
KKSDVFGAFKLFKALVEKQTGRKIKCFHVDQGGEFTLKEFVDFLMAEGIRIKFTTRATPQQNGVVERNNRTTAEALTSML
NEANLPMSFWGDALNVFRHVHNRSPTAALPKGSTPYSGFKGRKPRCGHLRVFGCRAYVLIGRDKRKSLQGHTIKGIFIGY
GDPQNHAGWRFYDPVSKKTYISRDVIFDESRFPGTSTKSSSLNSDFAPPLANFMDLPEHEDPFDEDDPVFPPALEAPSND
LPPLVGADLPPLVGADSPPPARRRREHALPPPPFELPTGPRTRKPVQKYDDYYSSIQRQADAKADAKRLRNLVPDIPAPA
LPIPVNDNTDKLLWDASLGPADEFGEQEVNFNLDLVSDEALMMAGRTFVENGTDSGGYSAFSATLQSSTCAMKVGAHDTN
PRNYREAMGSDHSEEWYTAMCLEMNAIERNGTWRVVYLPAGKKSIGSRWVFKVKHLPDGCLDKFKARVVAQGYSQRPGVD
FDETFAPTARWNAIRTILALAAVEDMHLESVDIRAAFLHGVMPEEMEIYMNLPDGFPAHPAPDIIKQPGDGRPVARLLKG
LYGLKQGAYLWHKRMNEVFIKIGFVRVVSDPCVYVYLRDKVRIIIPVHVDDMTIASASRPAILKVIDQLREYFDLNHLGP
AVGLLGVRLTRDRPNRKLWIDQRAYAVDLLSRFNMLDANPVTTPMDPNIKLRKSQSPQTSQEVEEMSRIPYIQATGGLLY
LALATRPDIVYSVGVLCRFNSNPGLDHWKAVKHLLRYIRGTLDYRIEYSAIASTPAPTFFKAFSDADHGGNLDNGRSTTG
MLLMVAGGAVSWSSKIQTIVANSTTEAEFIAASETGRELCWMRNFLDEIGTTQVGPSDLKMDNNSAISVSKQPEHMGRLK
HLDRHWFWLRQAVYDRKIIPSYIPTAEMAADILTKALTRDLVEKFRRMMGVVGEWSKEPLQ
>Copia-7_BRa#LTR/Copia 529-4987 via tfasty with ATCopia27, 74.5% SW:3933, 3 frameshifts and 5 stopcodons. [Brassica rapa]
MNTVIMSNLTKLEINALDITGNNYMTWAVGAKMHLRGNGLLETIDSSKTVSDEKKAKAMIFLRHHIHDGLKDEYITKEDP
CDLWKSLKERFDHQKYVILPKAKHEWIHLRFQDYKSVSEFNSAMFGITSRMMLCGEKISDYDMIEKTLSTFHPENVILQQ
QYRVSGYTRYSELMQVLLVAEQNNQLVTLNHQARPTGSAPFPEANVASSSYDNRRGRGRGRGGNRYHGRGRGRGRRFRPY
DERNNKDFHENERNEKRPGxxKANKERVCYRCGMEDHWVRTCRTPKHLADLYRESQKGKEKGRGETNFISDEPGPSFHGL
NDDTHLDVSDFLVEPESIDExYKFDMIxIDCIIVSISLVVRYMLCLLCLMFNNICFMNILNSERMPNFETMDGDLCLADS
ASTHTIIKDKKYFSSLKIRYCAGSVSTISGNAKIIMGSGRAKFSMPGGTIFEISYALYSPKSHRNLLSFKDIRRNGYHIE
TMSKDGIEFLCIKSERKHILEELRMLSSGLYCTKITMTESYAVVNMKFTDTFKIxHERLGHPGSVMMRKIVQNSNGHPLK
NGKILQTGEFTCNACSQGKLITRPSPAKVGNESPMFLERIHGDICGPIHPPCGPFKYFMVLIDASTRWSSVSLLTTRNTA
FAKFIAQIIKLRTQFSEYAIKKVRLDNAGEFTSQAFDDYCMSMGIDVEHPVPHVHTQNGMAESLIKRLQLIARPLVLRTK
LPISVWGHAILHAAALIRLRPIAYHKYSPLQLASGQEPDVSHLRIFGCAVYVPIAPPQRTKMGPQRRLRIYVGYTSPSII
RYLEPVTGDMFTARFADCHFNEDEFPALGGGIREIPKEITWCTPSLLHLDPPTNQRELEVQKIVHLHNLANQLPDAFTDT
KRVTKSCIPAENVPSRVDVPKEQADGNKMNEPRVQLKRGRPAGSKDKNPRKKKKLDEQSKVLEEPDTEKCLKEDIDKDGP
DDEKGTEKYEISINYARDEKIWIRNKIKDVDGMFSFSVSKEIDHENDDPNPRSIIECQKRHDWEEWKKAIQIELLSLNKR
NVFGPIVITPENINPVGYKWVFVRKVNEKNEVTRYKARLVAQGFSQRPGIDFEETYSPVMDAITFRFLMSLTASKNLEMH
LMDVVTAYLYGSLDNDIYMKLPEGLKMPGALKEESREICSVKLQRSLYGLKQSGRMWYNRLSEYLSNKGYVNNAICPCVF
IKKSSSGFVIIAVYVDDLNIIGNQKEVDDARTHMKEEFEMKDLGKTKFCLGLQIEHLREGIFVHQSNYTKRLLKRFRMDK
ATPLSTPMIGRTLNVESDPIRPCEDSEKILGPEVPYMSAIGGLLYLANCTRPDIAFATNLLARYSSDGGTAISWRSQKQT
LVATSSNHAETIALHEACRECVWLRSMSHHIQESSGMVNEKEPTKIFEDNSACVAQLKEGYIKSDRTKHIPPRFFSYIRE
LEKNKKVDIEYIRSFENPADLFTKALPTTTFRKHVYGIGMRHLRDL
>Copia-5_SI#LTR/Copia 137-4216 via tfasty with Copia-14_SI, 78.9% SW:3623, 2 frameshifts and 2 stopcodons. [Solenopsis invicta]
MASHHTVRIEPLNKDNFDTWKIQMEALLIKNDSWGYVSGHHVKPEVIATNAESVAAGAAWDAADRKARSDIILGICPSEL
KQIKGCETSNVMWRKLQTIYQSTxQARKATLLKQLTLHRMKDGNDVREHLRKFFDTVDKLSEMEIEVNPDLLTIMLLYSL
PPSFENFRCAIESRDELPTPEALRVKIVEEGDARKSDTRASVPNALIAKGPRGRRPKPKSKQSDARETKDAEPFKYKCHR
CRKVGHKAADCREALDSATAQNTDVSLYARSEKALIGNAFGNRRTDWCLDSGCSTHLCKDRRDFVEISDEGTGRLNLANS
ASTEIKARGKVSIATDVNGCPRNVDIHDVSLVPDLRTNLLLVGKIADRGYTITFNKYIGKVIDENKRTVLIADRIDELYY
LRNETPTCNIATKDGNERESFERWHRRMGHLNARDLAVSVRNRKIHGINLIAPAEKLDCEICILGKMTRAPFPKNTDRNS
KLLEIIHSDVCGPMxVESNGNARYFITFIDDYSKWCEIRLLKGKDEVFQAFKEYKASAEKRTGRCIKYLQSDNGKEFRNE
RFDAFLKEHGIGRRLTVTNTPEQNGVAERRNRTLVEMARCLLIQSGLPSSFWGEAVNTANYVRNRCPSSSLNGETAYQKW
TGNAPNVRHLREFGCNAYTLVRSPNKGKFADRSKKGILVGYSDESKAYRVWIPDEKRVDITRDVKFLEDDKISPTENFED
FTAHEEDHAESPDTSEILVPLNATEAEVGLENEPANARNEDEGDEHRDNADDADPPRRGPGRPRIIRTGLRGRPRQYHEA
ALVDANTEFAYSAEIPINEAMQGPDADEWLEAIVSEVKSLLKNDTWSVVKRPKDREVIGCRFVLRNKHNSDGTLERRKAR
LVAKGYAQRPGIDFCDTFAPVARMSSIRAVSALAAQFGLTLYHFDVTTAYLNGELEEDVFMKIPENIEDSLEEIVRSGRK
DCKIQKKAKKMLESLANEDNALLLRKSLYGLRQAGRRWHVKLCKILKEFGFSQSISDPCVFYLGKGEDILLAVVYVDDII
AVSKTEQAVANLFQHLSTQLDIKNLGPVKHCLGIEFSQTKEIITLNQRGYVNDILERFGMSGSNPVGTPVELGTKLRRNE
EIAPECKTLPYRELVGALMYLATCTRPDIAHVVSYLSKFNDCFSTDHWLAAKRVLRYLKGTCDVGLSFRRSTDPLIGFAD
ADWANCVDDRKSYTGYAFILGGCPISWESRKQKTTALSSMEAEYMALSEATKEAVHLQRFFGELGFPYPKIKLFSDNCGA
IKLAENPVFHNRSKHIDVRHHFIRGMLENGVIEVDYRSTEDMAADVLTKGLSGPKHRRCLELMGISPERSIRGITHVSRG
>Copia-3_TA#LTR/Copia 56-4001 via tfasty with COPIO_pol, 83.5% SW:3674, 1 frameshift and 2 stopcodons. [Triticum aestivum]
MDESTLGSLRHRVPILDREYFHEWKNEMLVIFNQYNLNKYIASPCAPYVDPMHPTLDESIDMIRNVRTVNLITRGVPRNL
IIKLPTLECAYTIWKFLEERFPDYSLKNLDEILHKSIALTKMNSNDPMFGVRLFELTNLMRAKGNVGIISDIISEATRIH
KQDYCQTHTNESPSLGIDPPHDDVEHGYYDEDDDDDFDLDDAMRHFGLMANLRGYMAGGKEWVLDSGCTDHMTGDKDMFR
ELAENDSPGKYVTFGDNSKGKVVGLGKVAISHDSSIQNVMLIESLGYNLLLVSRLADFGFNVLFTEVDCQVFRRDNHKMV
FTGIRRGDLYIVDFTKKAQPKTCFTAKSSKGWLWHRRLGHVGMRNLNKLIKGNHILGVNDVIFDKDRLCSACQAGKQVGG
RHPLKNIMTTRRPLELLHMDFFGPNSYKGLGGNSFGLVIVDDFSRFTWVFFLDDKSQVQKIFINFARKAQNQFEVKIKKV
RSDNGTxFKNANVDTFLDEERISHEFSATYTRQQNGVVERKNRTLIKMARTMLDEYKTPKHFWVEAVETACHATNRLYLH
KLLGKTTYELLTGNKPQVGYFRVFGSKCYILDKHRRSKFASKSHEGFLLGYGSNSHTYRVYNNFTRKVEEMVDVKFDESN
GSQVEQLPIDVGDKDPSEAIQDLSIGKVRPMEVKESTSSIQVEASSSRQGEPRVDTEASTSGTHQDEENEEVHQERQQPH
SPPRQENDNANNEDQEEEEEEEEEEEYEEDVQPRTKQKLSRIRARIAKDHPVEQIYNDIQTGRITRSKTHLANFCENYSF
ISSIEPMKVEEALEDPDWINAMHEELDNFERNQVWTLDEKPDNNHNIIGTKWVFRNKQDEDGQVVCNKACLVAQGYTQVK
GMDYGETYAPVARLESIRILLAHANHHDITLYQMDIKSAFLNGEIEEEVYVKQPPSFINPKKPNDVYKLHKALYGLKQAP
RAWYKCLTKFLLGKGFEIGKIDSSLFTKRVNGELFVCQIYVDDIIFGSTNPHFSEKFGKLMSEKFEMSMMSELKFFLGLQ
IKQTKEGTFVSQTKYTKDLCKKFNMQECKGMSTPMPTSGHLDLTKDGEPDDQKVYRSMIGSLLYLCASRPDIMLSVCMCA
RYQAAPKECHLKDVKRIVRYLIHTPNFGIWYPKRASFDLVGYSDSDYARDKVDRKSTSGTCQFLGRSLVSWSSKKQNSVS
LSTTEAEYIATGSCCAQLLWMTQTLKDYGIYVKHVPLLCDNESAIKIVHNHVQHSRTKHIEVRHHFIRDHVAKGDIDLKH
VRTEKQLADIFTIPLDEKVFCRLRGxLNIIDVSNL
>Copia-3_PR#LTR/Copia 465-4625 via tfasty with SHACOP15_MT, 65.1% SW:1674, 1 stopcodon. [Phytophthora ramorum]
MKTIDNTHVRLVKNITTSYAIFQAICKKYEGAAFHGDPYFIQHFLMKIKYEESSDLTEFFLQLENAMKAASEATESVMTD
GQKSLYLFHSMPKTWKDDLRVWKGQRKYIPYEELKLSIEAKVREIQAQERYTLAKGTPETCTTKSEQALVAVPDHTALSA
QTQTTDRICSYCDRPRHNIRQCRALQKDLRDGRVKAGTVLPENFGFKGGNPKRDHPYNNNSSGRGRGRNYQNRGRQDRSD
NQQDRNNRQVRNTRQDSDKSKNRNRSFHQERREVGLIAVAATVTPSISLTAQATVSPEPTWTIDSGCTRHVTHEAQWFTT
MNASSGAITVGGKHEIPIEGTGQVEMEIIDSKGLKKTLTLRDVLYAPRLQFSLLSVPAAVKHDFRFSFDRKHCAIQTDER
FKIKAMMANHADLYQFQAKPVVKNTALIAASGKQRSMLLLHKRLGHPNVRILHDLPRSQAISGLEDEAVDSRTQFFCTAC
TLAKSYRSPFYSNRTVERARSPLDKVHTYICGPLPVPSLTGCRYFLIFIDDFSRYMFTYAIKNRSEVYECYENFRKRALN
IFRSDVNVLEYPNPIEDCDIQVLQADNAKEYEKLGCTIFKKYGTHAPFTNAYTPQQNGVAERRMRTIMERVRALLLDGNL
PKPLWAECVRHVTTLINMTPSSKTNGKTPYELWYNRKPSMEFLKVFGCSAYVHITEQYRDKLDARARLCMYLGLPDHKKG
YRLMDVNTHAIVYSRDVVFKENEFPRLATLTDTPAKPSQTSTADMQTNHLAPRPAMPPTAVPPRLPPLREALKRTHYTFV
SETTSPPSTPTSKNTCIATDEPEITLGSEEGIQETEQRTTLLYTLLAIRYVSEPTTYRETMHSSHADQWHQTANSEYKSL
MDNNTWVLVPRPCGRKILSNRWVFVVKYSGTGHIDRFKARLVIIGFLQEYGIDYNEIFSPVIRMEVLRLLLTIAALLDFE
IHQMDVKTAFLNGTLEEEIYMAQPEGFKVPGKEHLVCKLLRSLYGLKQAPHVWYLTLSAFLESLGFHKLIKDRCVFMRTT
NGLTCYIAVYVDDLLIIAPTTALVRELKSALNQRFSMSDLGEVKYLLGWSIQRDRKNRTIFIHQHKYATKVLDRFSKYIS
YPIATPSDRNVKLSESSQPSSEVKKDAMKEMPYREAVGSVMYLMVGTRPDMAFFMREVSQFLANPGMEHWKAVVRGLKYL
AGTQDHGLILGGASNITPENLADSFTAYSDSDYANCPDTRRSVGGYVTMLATSPISWLSRKHHTVVLSTTEAEYIALCHC
MQEVIFLKLLLKELGFTTAQAMTIYEDNQSCIKICNNPELHGRSKHIDIRYHFVQEKVExHEFTVVYCNTKEMVADIFTK
ALDKHQFRELRTKLRMKPLQAHVNHSE
>Copia-4_CPu#LTR/Copia 250-6447 via tfasty with Copia-1_CCi, 58.6% SW:1234, 1 stopcodon. [Coniophora puteana]
MSSNTKANNTFSATNVFSGLHVEEWALSMLHYCRSEGCGIALDPRPVALATGTAEEMAERNKEIKEWDAKDMQARGKIGF
KVDPHVWSKVEEAATSTTVSVKTASEILAFLKSEYGVQKCGVTEAFVEMGKLLRTGIPSTGNPNHHLDVFYRTAQRLNTL
SGFTVNLPTNVHSYRSGVLCDQQLALLLMCALPESYRAVREHFNNEVTAVKNLSLVDLRDAILRHQAQLANQHKTPGHQS
KGKQRATGERPYEGPVASAQPAQGGKPKGKPQWSQQQQQAGPSGQQQQWQPKPKGQGSKQKKRGGRNYDRSGKRDAHAAN
GTVHFAQSADRYTPVDQREYFPAPRELPPLPPMQESVRDPRLLPNQSGQRFQGTGASNNFGIHQALDRARETASLHGSIR
PLVEDVRTEVQREMLEERLREVSPSTGYRLYRQSLIDDVTSILGTIDGDCRDAARQSNSNRADDSGANSSRSVSPGPSNK
VGRDAGTESQPPLTVSRLGPKPLSRRLGSQRRSATTANVDFVDTGSSAEPDVNDLELRSVADGLSYGTEFLTGPVSLESE
LPYSSSKPDVLRATTQRRVQRRGSSSAARSPGTSLAERLSGDTRGPTSASPTELPLQHMQGEVLPNARGPRPTQLRTSAL
ASRDSTSPQGRRDSNGTEAERTPSRSPAGCGGRTRGTKRDIRVAQEETGGMDEGAHRGAPTRRISGTHGGRSARSNSPQP
RRDTPSGSSAPRRDSPLAPSSPSRERSVSLGANSISPLIEGYGSRSATSEARERPSEAYLAGEPEDYDGWSDEGGVMDSL
ERAYEAGNPYLNKSYVPIPSSETNVHADGHSLKPYIERSVLVSSRVALDNGHVCVCASSTSACTKCKGKSQAGTAYWLLD
SGATDHYTFDRNDFVEIQKLTKRQQFPVKTATGTTHVTHKGTCMIKHTNSKGVQVVSRLYPVYLMPELNQRLLSLGSFLK
DGLSVSGSAETVLIISANGTEEFCCTRRNTSPEDTLFGLRVVVQNIADTQLHSVYYVDYNVAHLRFAHPSPEVLSKMRKH
VTGYPPDTEILSKPLSPLCKGCAEGKMPDRHYARNSDRAGAFLDLVHSDVKSYPTKSYHGQHYALILMDDHSSYAWVYLI
AEKSTVIKCVRDWLALLKTQYGTTPKTWMSDSGGEYTSKAFYDMLSENGITNMRSVPHVPKENGRAERLIRTLSDKALAM
SKQACLPESWWCYAVMHAVTVYNQTPMRRLEWQTPWQVARGEVPDVSKFRVFGCGAYVFLPEAYRKDKLDSHSKLMTYIG
NADGGHGWKFMRRDNSTFIAAHAVFNELMFPRCAEQPIPQATRIHIPAAEDLDHMDPHVTSSWDPIPTIPGTNIPKRKGS
SSNPKPSYQTPSYDDDGYQSEERPNSSRVPARRPAPQVQAAPIVPQAPVPAGPRRSTRVPVPTTRQENNSIVGDTASQRA
RAQDRQVTADRRTSALTRGGRRGGQPQPSRGQANTPSSQPPSASQPGATTEQSDPRNTRQNNGPVVPPRHEYEGELSPAH
EPLILPGMDEAELGxEGGELVSYASLMAMAVPSDSVRDWKYEDFKRLPAEQRAEWDAARADEMEALVKRHVFEITTLPKG
RKLVESRWVHDVKSDGRKKARIVAKGFSQIEGVDYELVFAPVVRFETVRIMLALAALENWHIAALDVRNAYLYGELEEEI
YMRPPPGYELPPGQVYRLYKALYGLKQAGRQWWKILQDSMIELGFVQLQSDAGVYVYRHSKTRCIVIVYVDDGLFCSKDR
ALVEQLKAKFMKKWECRDLGEVSEFLRMKIQRKGSKVILDQRDYLHKVLERCKMLDCHAVATPLPEGYNPTPNTGKPDPG
RTKRYRQIIGSLLYLTLGTRPDICFAVNQLAQFSQNPTADHLNHALYICRYLKGTSKYSLIYDGVTGEGLHAYADASHAD
NKVTRVSTSGHFYKLASGAVTWTSHKQKSAVGSTVEAEYIAMAGCTLQGKWIRNMFLEMGYNMTEPTLISNDNQGAVNNA
NNPITSQRTKHIDTAFHITRQYVEEGRFRVEWLKGEDNPADLLTKNLGRVKIEKFRPYYGLVFNNA
>Copia-5_DAn#LTR/Copia 192-4351 via tfasty with Copia-1_DPer, 85.9% SW:4838, 1 frameshift and 1 stopcodon. [Drosophila ananassae]
MEKSKRNIKPFNGEKYAVWKFRVRSLLAELDVLKVVDDENPDKQDANWIKANLCAKSTLIEHLSDSFLNVASSDVTAREI
FKNLDAVYERKSLASQLSVRKRLLTLKHSGEMPLLNFFNLFDELIGELLAAGAKIEEMDKVSHLLLTLPSSYNGVITAIE
TLSEENLTLGFVKNRLLDHEIKLRSDQKDTSKKVMKALVPNKYINNSNQNYSFKNKLAKHINQFKRKPIGNIKCHHCGRV
GHIKKDCFHLKKIMNLNKNNNKNKTNENENDNRQAQTTTSHGIAFMLTNCETDKCNFILDSGASDHLINNDSLYADYEEL
EPPLKIAVAKQGQFIYATKRGVVRLHNNCEVTLEDVLYCKEAAGNLISVKRLQEAGLTTQFDRDGVTISKNGLTIIKDxG
MLNNIPTIQFEAYIACKETNNYRLWHERFGHISNAKLLEIKRNNLFSDTSLINNLKLSDELCEPCLRGKQARLPFNHFKD
KSHITRPLFVVHSDVCGPITPVSLDEKNYFVIFVDEFTHYCVTYLIQHKSDVFNMFQDFVAKSEAHFNLKVVNIDNGREY
LSNEMRSFCVKKGITYHLTVPHTPQLNGVSERMIRTIIEKARAMVKGAQLDKSFWGEAVLTATYLINRIPSRALVGKEKT
PYEMWHSKKPILKYLRVFGSTVYVHNKNKNGKFDDKSKKSILVGYEPNGFKLWDSINGKFIVARDVVVDETNMVNSRVTK
YESFPNDSKENESFPNDIKESKSFPNDSKENESFPNDSKENKNFPNDSKENEHFPNDSKESKNILNESKENKKEKFPNES
RKRKQADPLNDSKGDLESNKNPVIYDGIDNNIDVEVTSRRSERLQKKPQISYNEDDNDLNKFILNAHAVFNDVPKNFDEI
KYRSDKSFWEEAIKTELSAHEINNTWTITKKPMDKNIVDSKWVFSVKHDEMGNPVRYKARLVARGFTQKYQIDYEETFAP
VARVSSFRFMLSLAVQYNLKVHQMDVKTAFLNGVLKEDIYMKLPQGVLGDSNTVCKLNKAIYGLKQAARCWFEVFEKALK
ECDFVNSPVDRCIYILDRGNIKENIYVLLYVDDVVIATREINRMNNFKKYLMEKFRMTDLKDIRHFIGIRIETYEDTIFL
SQAAYIKRFLDKFNMSDCNAVSTPLPSKLNYEALNSDESCNAPCRSVIGCLMYVMLCTRPDLTTAVNILSRYSSKNNSEL
WQCLKRVLRYLKGTIDLKLTFKKKDIFNNILVGYVDSDWGGNGIDRKSTTGYLFHMFESNLICWNTKRQNSVAASSTEAE
YMALYEAVREALWLKSLLNSVHIKIEMPIKIYEDNQGCISIANNPSCHKRTKHIDIKYHFVRERVENNEICLEYISTDNQ
IADMFTKPLPAATFMKLRSKLGLRNDV
>Copia-4_PTri#LTR/Copia 182-4303 via tfasty with Copia-8_Pru, 86.6% SW:4802, 1 stopcodon. [Populus trichocarpa]
MSEEKSFLQPAIPRFDGHYDHWSMLMENLLRSKGYWSLIETGYPEPVANVVLSEEQHKQLDDLMVKDLKVKNYLFQSIDR
TILEQILEKRTSKQIWDSMKKKFEGSARVKRSTLQALRRDFEVLEMKVSETITEYFARVLSIANKMRSNGEQMKDTIIVE
KILRTLIEKFNYVVVSIEESKDIDTLTIDELQSSLTVHEQKFSRSHGEEQAFKVTVGDRYGSRGRGRGDYRGKGRGRGRQ
ALNKATVECYKCHQLGHFQYECPAWEKEANYAQLNEHEEMLLMSFVEMSQATQGDLWFLDSGCSNHMSGNKAAFCEINES
FRETVKLGNNTKMSVLGKGRVRLLLNRNNFVITEVFYVPELKNSLLSIGQLQERGFEILFKTGKCHIYHPQKGLVIQSEM
TANRMFLLLANTQHTKEKITCFQTTSSDIAHLWHCRYGHLSHKGLKLLQAKNMIHGLPQLPASTVTCTACILGKQHRRPI
SRRSTWRATQQLQLIHADICGPISPISNSKKRYSLCFIDDFSRKAxIYFLSEKSAALNMFKCFKKHVENETGLSIKCLRI
DRGGEFNGQEFDDFCKQHGIKRQLTAAYTPQQNGVAERKNRTVMNLVRSMLSEKKIPKNFWPEAVTWAIYVLNRSPTLAV
KDITPQEAWYGVKPVVEHFRVFGCLSYAHIPDARRTKLTDKSLPCILLGVSDESKAYRLYDPISKRIVVSRDVIFEEEKQ
WEWDKNVEEQVLMNLEWGDDAVFEDDTGNTDSGDDANTGEDAENNGMGDNVDASDVANEADNTGNEGSTAGNEGSTAANE
ADSTGNERSTTETNGSEGRRPHQTPSYLNDYVTGEAFSDEDFEANLAQVVCADPTSFEEAQLSPKWRLAMDAEMESIERN
ETWKLTELPAGAKMIGVKWIYKTKFNEFGGVDKYKARLVAKGYSQQQGVDYTEVFAPVARMDTVRMIIALAAQRGWKIFQ
LDVKSAFLHGTLSEDVYVEQPKGYEQKGNEHKVYKLQKALYGLKQAPRAWFSRIEAHFVSEGFQRCHSEQTLFVKTSSKG
TILIVSIYVDDLIYTGDDDIMMSRFKESMLREFDMSDLGGMRFFLGIEVLQTVDGIYIYQKKYAMDVLKRFNMENSNVVG
SPIVPGSKLHSDEGGVRINETYFKQIVGSLMYLTTTRPDIMFSVSLISRYMSKPTELHLQAAKRTLRYLKGTVNYGIFYK
KGEAEELLAFTDSDYAGDIEDRKSTSGYRKSTSGYVFLMNSGAVAWSSRKQPLVTLSTTEAEFVAAANCACQTIWMRRIL
EKIGYQQEGSTVIMSDSSSAIKISKNPVMHGRSKHIDVMFHFLRDLVKDGVIKLEFCGTKEQVADVMTKPLKLDQFQKLR
QMLGVCEVLDKLNT
>Copia3_XT#LTR/Copia 4-4101 via tfasty with SHACOP15_MT, 1 stopcodon. [Xenopus (silurana) tropicalis]
MSPSPVFPDQDPDYAFAMDAAPTATARINKFDGTNFHTWKFKMQMVLEERELWEVTSGEVKLEQCTTAADQATFRKKSRK
ALAIVCLALEDSQLPLVRSAKDAHDAWSRLEGHFEKKSLANKLFLRRRFFTTTMDEGDDVLEHINKLKTLAEQLDAVGAP
VSEDDLVITLLASLSESYQFLITALESRSDTLTWELVTSRLLHEDMKRKEQGGGADGTAHAQGQAFMTSDNGKRKGRQAQ
AQRTSACHYCGEHGHWIAKCPVRIRENGERQRPQRANVAQVEDDSGDFLFSVGGDTGASKLSGMWLVDSGATQHMTYSKE
YMKNYKKISPVDVHLADDGVVQAVGSGDIVMSMQTPRGMKKGVLTGVWHIPKLSRNLFSVGRFTKDVGPVTFESDGCFAE
TKGLKWKLGAREGKGLFKLCMTPRTPADEANAASSKNRQGDTTSYLWHLRLGHIGHGGLDAIVKKGYGTGIPMTSVKQxE
VCDGCALGKQTRVSFMKSSPNRAKQVLEVVHSDVCGPMQTATFGGKRYFVTFIDDKSHFCVVYLLRNKSEVAAKFAAFVA
LAETQTGKRVKVLRSDNGGEYTSGAMAKLCADRGIEQKFTPPYTPQLNGVAERMNRTLVECARCMLEHAGLSKEYWGEAV
MTATFLRNRCPTRAISHDKSPHHVWTGKKPLLANLKVFGCHAYVHVPKEKRSKFDARSVRCRFLGYSEHEKAYRFEEIES
GRVLVSRDAQFMEDVFDGGRRDYASKEVLVGLPTDDDEDTTDEETQSGSDENREEAARNQDFEPGSKRHPRTQSLEEAVE
VPSAKRYAVPRRQQPLDEMSAAAQEKEDFEAAYVVDSVGEMPTTFKSAMESSDADKWKEACDSEVESLRKNETWTLVPLP
KGRKAIGCRWVFRVKENQSGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRVLLSLAAKYKLTVHQMDVKTAFLN
GLLDEDIYMAQPDGYVDGDRPDYVCRLKRSLYGLKQSPRMWNKTIDEFMLKLGFKKCESDHCIYLKRDNHDMMFVALYVD
DLVLASSSDGMLKDTKQALSDRFEMTDMGQLKYFLGMEIEQDVATGKVSVRQTKFAKDILEKFKMDESNPVKTPQDPGLK
LTKAMCEGGCKHDETMANVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIRGTKTHGLVFQA
SSEDGLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMAS
DEAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTLDMLAEIMTKPIAAPQFDALRTKLGIVV
ADESSG
>Copia3_TP_gag#LTR/Copia 140-1116 via tfasty with Copia4_TP, 1 frameshift and 2 stopcodons. [Thalassiosira]
MSNIKEAKIEIPKWDGTRETFDTYQFKLRAITAMNMYPEVLDQKAMKACPTLTEYQVLLNQLPGAQGTDVNRNSKVALYR
ANQQMSGYFCMGQENKLGVNAIRNTMSDDFPLGRVCDALASLQxVMKPLDVTAEIEMMGELFKVRFSMAEDYYNEVTSIM
NNYDCTMSDREILEIMATKTGNTSYVILIQAELAKAAPSFQDLCITISSTQRLAKTKFNDSGNDKKSEKEVSLPNQQDNG
PSRKPKCAHxQGQHKRKECNKYKAALKAQGKCKYCDKEGHLEDKCFVKFPEKKPKWMTEKSSNKSGGETANGNLEIQLTS
VEKDFS
>Copia5_DR#LTR/Copia 21-4250 via tfasty with ATCopia63_14-4060, 2 stopcodons. [Danio rerio]
MMAASYKVPPKFDETRPYECWKNEVNIWTRVTELDKKKQALAVALGLEGRARETAMEISAEDLDSDTGMTTLMAKLDDVF
LKEEKDRAYEAYSYFDGITKDSSVSMADYIIDFEQRYNRMKRYNMTLPDAVLAFKLLDTACLDDKNRQLALTACTELTFS
SMKSALKRIFGGKAAGSSNGIQVNQDVAFFTEQRPQRREKRNEMWQSGHSKQPLPGTNPLDKYGKRSRCAICQSTFHWAx
DCPHKKTKHVKITENANIEECNITLFTKASMSDAEIFMTESLGSAIIDTACTRTVCGEKWLENYIDDLTQDQVNQLMQTE
TRSCRPFRFGDGNLVYSTKNVKLPAKIGLTKCLIDTEVVKVDIPLLLSKTSLKTAGTILDMEKDSAVMFKQSIPLEFTSS
GHYCVDIRDKDNEKDQTEEKVLTVTESMSPEEKHKVLLKLHKQFGHASADRLQRLMHSSGNKDKECFAILQQIVDDCEIC
KKYKRTKPKPAVGLPMASEYNETVAVDLHELEPSIWYLHIIDHFTRFSAGSIVKTKKSSEIVNSFIHTWISVHGAPQKLY
SDNGGEFNNQEIRDMAENFNIEIRTTAGYSPWSNGLLERHNQTLTEIILKVKRENGCDWHTALDWALMAKNSMLNVHGYS
PYQLVFGQNPNLPSVLVDKLPALEGTTVSAKVGEHISALHASRKAFTEAESSERIRRALRKQLRPTDDMYVTGDKVFYKR
ADCPEWKGPGVVIGQDGAVVFIRHGGTLVRVHQSRLCKANTQNQESRDKQNEQANSQKVTKKGSLNSVADSSDSEVTDSD
QENISDRELCTGEVAYPRITQAETDHVVCGDPVSFADVKLKTGQTITFNKQNSDGLHRAKVLGRAGKASGKYKNWFNLQH
IKHDGSDGQKESVDMSGVDNLHIESTDREADVLITKDISFDAAKQAEIFNWYKNNVFEEVEDAGQKCVSTRWVCSLKETQ
NGIVPKARLVARGFEELNIHELQKDSPTCASDSLRLLLAVICQNKWQVHSMDIKSAFLQGMQLSREIYVRPPPEVGKENV
LWKLNKCVYGLADASLYWYNKVKEIMLSTGSKMSKVDPAVFYWLDEQCKVTGVLACHVDDFLWAGSQNFSTNVIPILKSA
LNVGREEHEHFCYVGMDFVTINGVVHVHQHRYIENLQPIHLQAARAVQRDTSLNETEREQLRSKIGQILWVAKQTRPDIM
FDVSSLASNIKHATVQSIHDTNKVIRKLKSEKVSLKFQHLGNSDALNFVVFSDASLGNLPDGGTQGGTLIGLMGEGGKFS
PLCWQSKKIRRVVRSTLAGETLALSDGIDNAIFLTTLFSELTTGNAELNTPPLICVTDNHSLFDALKSTKQVSEKRLRLE
ISSIKELMQSKKIKKVLWSDTKTQLADCLTKKGASALMLLKVLSEGLWCY
>Copia14-PTR#LTR/Copia 143-4056 via tfasty with ATCopia95_359-4498, 1 frameshift and 2 stopcodons [Populus trichocarpa]
MDSASFSPKTPLFTGQNFGVWAVKMETYLKALDLWEIVESDRQPTPLGNNPTIAQMKFFNEEKAKRFKALSCLHSAVSED
IFTRIMACKSAKETWDKLKAEFHGDEKSRRMQILNLRRQFEGLKMKENESIKDFSSQISKLVNQVRLLGEDFPDSRIVEK
VLVSLPENFEHKICSLEDSKDFSEMSLxELVNALQAVEQRQAYRQEGSSEGALVAVYKDKSRAKNIFRNNQEGKREKGRS
WKSANWQQNINNSFMRGKEKKEHFPACKYCQKTNHLEAWCWLKNAQCRNCKQFGHIQRFCKNKTEAEQQAQVADCSEVKE
DLLFMVTIQDMCNSAEPKDSSWLIDSGCTNHMTADLSLFKDLDKSYLSKVRIGNGDFMKVEGKGAIAVETLSGTKILKNV
LYVPKINQNLVSVGQLIESGYSIVFNDGVCDIKDKNGVLLLSAKMMNRSFNVNWKEVCLSANTYENNESVLWHKRLGHFN
YTTLKRMADQQMTHGLPDIQEQQIICEACQLGKQTRTVFPDNAYRAVSKLQLVHTDVCGPMHNESLNGSKYFLLFIDDFS
RYCWVYFLKSKADVFAEFVKFKAAVELETGNKLKILRSDNGGEYTSRQFEAYLAKEGIKHQLTIPYTPQQNGVSERRNRT
LMEMARCLLYEKKLPLNFWAEAVNTASYLINRMASRVLTDKTPYELWYGFKPSIDHLKVFGSICYVMKPEVGRRKLDQKA
DIGIFIGYSTTSKAYKIYDLNFNKVVVARNVKVVENATWDWKNSSGEGSKQIQQTEWDAAENIDDQPVKGTRSLSDIYSR
CNVAEAEPVDVEEAMNSQVWIAAMKEELAMIDKNQTWMLVDRPTHKKVIGVKWIFKTKLNADGKINKHKARLVVKGYSQE
AGIDFTETFAPVSRHETMKLLLALAAQNGWYIFQLDVKSAFLNGVLNEEIYVEQPAGFEKSNSTNKVYLLKKALYGLKQA
PRAWYSRLDNHLLSLGFNRSMNEVTLYVKHADGHKLIVSVYVDDLLITGDKEQLVEEFKTNMKDMFEMNELGLLTYFLGM
EVTKSDQGYFLCQKRFSLKILDNFAMSKCKPVSTPMIQGQKLMKEDGSPKADGKVYRSLIGSLLYLTATRPDIQFAVNYL
SRFMQEPSQNHFVAAKRVLRYLRGTAGFGIHFVKSSSINLVGFSDSDWGGSDEGMMSTSGYCFAVGKSVFCWNSKKQSVV
AHSTAEAEYIAAYVAAKQLIWLRKMLSDLDCNQQNPTTLFCDNTSAIAISKNSVFHDRTKHMKIKYHAIRQFQQEGELEL
CYCTSEDQLADFFTKPLAKDQVxRS
>Copia9_TP_p1#LTR/Copia 777-3044 [Thalassiosira]
MTTPSDSTPSRQSRRKAGLSPEHPTLSGEKATRLKASPNEGAILPPTSLGMAEEEVHPVDKLKEMEQSVDSKFKEMEQSV
DSKFKEMEQSVDSKFKEMEQSVDSKFKEMEHSVDVKFKSVDSKFKAMDKRFDDIENLLKKVLSRQRTGESNKSRSSVSID
PVDNMMGSFEASLLGTTDKDTVDEGGDEVVFNGSVSTKGMEPSGSVHSGSVVSVRHPLKSTGKISRHSSLVTPVKVKTTA
ENAREAWSKAPKKMNDWPTGNDRNGVEDISDAGGVKQIPTAQPPPMSPQEASTYYEPQLDHFLPPLYFAGGSGRNDNFNG
VDVLAYHHLKSLGILNNYVWSDIMNAHGTVMAKWNLYNGPRDKDIHDASKFPTLENCRVDTLVSWYQSLQPRLASYCIGL
TPFDGIELSFGYQGLCIPGLGIKRYRPMALALYEILITKLPREHQTLLGLFDVGTKDGYHLFWSFFCLTLPIFNTDMELK
YPKFADHSGDVEQFARATVIYHKFERMDGRNMNQRHKVMKYLTTLSKAVDWPIVHVKLDCVSRCPGDLSLPVDSQYGTLP
PSLSLAQVTADIMQYLRNRQHDPTLGNVDTYRRTNMLEAQLVNKGTVWKDAKPMDFHMQGYEDLYETDISVFDPVANAVQ
RRSFPRKSTAPERARVRSPPVACDACGGNHKAITCFWLARALRIQDFIKDPRNKRRIDEAIQYWKDKRAAQVEHKGPERD
PKRILAAYVDTFGLSPEQVAEEMDMEEVLESVKDE
>Copia3_HV_env#LTR/Copia 6887-8212 via tfasty with COPIO_env, 3 stopcodons. [Hordeum vulgare]
GTRRPSYMPPAPPExPEGDARRISLEPSPTLGREVKDFTKVPKSSYFIFCRDVNQFSVERDSMDSCFRTHVQADIFSTVI
VPKGLSVHHYIDLEHIPTHPTKYPGTIELIQSLGLAAPFAFRCNFNSAAIHQFYATCLFGSNNTVSWMTSDVEFTASYDE
FVAALGFPNSGFKIHKNDPNHAHKPIEACGLLLKPLCELDADEWMKDLNQVSIWRSPFFIIFQCLIRTIYPKMGDRGACN
DYCIDIMSHLHESPKCKINVPHFLWHEIRLASLQYKRAFPHAPFIxAFIYHVAEFIVAPTHTHHKWVIPNHMANDYAPKK
TPSTSTRRTATRSATPSSSSAPLGRFAKFIGKAHSAMMKAFSFxCGQTHDVVSRLVSSKNALKARLRDSGSLDVIDDEDL
PAAPPSDFGFPSSPEWADFLDEAGGSGSPDDEDDEDDAADDL
>ATCopia75#LTR/Copia 112-4602 [Arabidopsis]
MSSASALVTSTSSSNTSSTTAYLINASDNPGALISSVVLKENNYAEWSEELQNFLRAKQKLGFIDGSIPKPAADPELSLW
IAINSMIVGWIRTSIDPTIRSTVGFVSEASQLWENLRRRFSVGNGVRKTLLKDEIAACTQDGQPVLAYYGRLIKLWEELQ
NYKSGRECKCEAASDIEKEREDDRVHKFLLGLDSRFSSIRSSITDIEPLPDLYQVYSRVVREEQNLNASRTKDVVKTEAI
GFSVQSSTTPRFRDKSTLFCTHCNRKGHEVTQCFLVHGYPDWWLEQNPQENQPSTRGRGSNGRGSSSGRGGNRSSAPTTR
GRGRANNAQAAAPTVSGDGNDQIAQLISLLQAQRPSSSSERLSGNTCLTDGVIDTGASHHMTGDCSILVDVFDITPSPVT
KPDGKASQATKCGTLLLHDSYKLHDVLFVPDFDCTLISVSKLLKQTSSIAIFTDTFCFLQDRFLRTLIGAGEEREGVYYF
TGVLAPRVHKASSDFAISGDLWHRRLGHPSTSVLLSLPECNRSSQGFDKIDSCDTCFRSKQTREVFPISNNKTMECFSLI
HGDVWGPYRTPSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAMSERQFGKQVKAFRTDNGTEFMCLTPYFQT
HGILHQTSCVDTPQQNGRVERKHRHILNVARACLFQGNLPVKFWGESILTATHLINRTPSAVLKGKTPYELLFGERPSYD
MLRSFGCLCYAHIRPRNKDKFTSRSRKCVFIGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYATATQSNVPLPPPTP
PMVNDDWFLPISTQVDSTNVDSSSSSSPAQSGSIDQPPRSIDQSPSTSTNPVPEEIGSIVPSSSPSRSIDRSTSDLSASD
TTELLSTGESSTPSSPGLPELLGKGCREKKKSVLLKDFVTNTTSKKKTASHNIHSPSQVLPSGLPTSLSADSVSGKTLYP
LSDFLTNSGYSANHIAFMAAILDSNEPKHFKDAILIKEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLKYNS
DGTLERHKARLVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCS
DPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRFKSQL
HKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGR
FIYLTITRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNACPLTRRSLSAYV
VYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVHHSSPMKLHCDSEAAIHIAANPVFHERTKHI
ESDCHKVRDAVLDKLITTEHIYTEDQVADLLTKSLPRPTFERLLSTLGVTDYVPST
>ATCopia69#LTR/Copia 54-4080 Wised via estwise with ATCopia49 protein [Arabidopsis]
MSNTKLKISQFDGSGDFSLWKMGLKDALVEQTKSSSLTDEEEDDPAKKKKILEEEKARIDRDEKAMDMIFINVGDKVLRN
IEHSKTAAEAWATLDKLYLVKTLPNRVYLQLKVYNYRMQDSKTLEENIDEFLKMISDLSNLXIQVPEEVQAILILSALPE
GYDMLKETLKYGREGIKLDDVVSAAKSKELELRDGLGGSRPVGEGLYVKGKFQAKGSDNNKGNNSTEGKKVCWICEKEGH
FKRQCYKWLEKNKGNGAGETTLVKDDAQDLVGLVASEANLSEDKRDQEEWIMDTGCSFHMTPRRDYLVDFVEGKAGKVRM
ANNSFSEVKGIGKVKFTNEDGRQIILHGVRYIPEISRNLISMGTLESEGYEFRGGNGVLKVIQGSXVFMKGVRRASLYIL
QAEARKSDADSLTTVSGESDQTQLWHSRMGHIGQQAMEVLSKKGCFGNDKISEIKFCEDXIIGKTHRASFGSAQHVTNEK
LDYVHSDLWGSPNVPHSLGKYQYFISFTDDWSRKVWVYFLKSKDEAFASFTEWKKMVETQSDRKLKKLRTDNGLEFCNQK
FDCFCKKEGRVRHRTCTYTPQQNGVAERLNRTIMNKVRSMLSESGLDKKFWAEAVSTSVYLINKSPSSTMENKIPEELWT
SVISNLSRLRRFGCIVYVHSQEGKLDPRAKKGVFVGYPSGVKGFRVWMIEEEKCTISRNVVFREDVMYKDIMNATTSCIS
LELPLTTNKVPIFECAGASKTRDSSDHGGATESISDETTEIIDIDQVDTTPEGNQRTRQIARDRPKRQVIIPSRLKDYEM
DEEVLDEIAGYAYLITEDGGNSEPECYQEAVQDPDSEKWLEAADEEIESLIKNKTWVLVERNSLQKPIGCKWIFKRKAGI
AGVEKPRFKARLVAKGYSQKEGIDFQEIFSPVVKHVSIRLLLSIVAHLDMELQQMDVKTAFLHGYLDETIYMEQPEXYTH
ERYPDKVCLLKKSLYGLKQSPRQWNNRFNEFMQKIGYERNKYDSCVYFKMLQSGEYIYLLLYVDDILIASKDKKEVCELK
VLLNSEFEMKDLGDAKKILGMEIVRDRQAGTLSISQEGYLLKVLGDFGMDRAKTVNTPXGIHFKLKPATDEEIQKQSEVM
RTIPYQSAVGSLMYSMIGTRPDLAHSVGVVCRFMSKPLKEHWQAVKWILRYIGGTLDRKLCYKNEGELVLEGYCDSDYAA
DKETRRSTSGVVFTFGGNTISWKSSLQKVVALSSTEAEYMALTDAANEAVWLKGLVSELGFAQGSVNIHCDSQSAIALTK
NAVYHERTKHIDVKYHFIRELVNDGVVQILKIDTEDNPADIFTKVLPVSKFQDALDLLRVSQS
>ATCopia93#LTR/Copia 147-4398 via tfasty with ATCopia20_134-4411, 4 frameshifts and 6 stopcodons.  [Arabidopsis]
METPKPAILKGENYLLWKRTTKTVLCCRGIWSHVETKHVQFKLPNDGSEGFNREEEEAEIEKxAKWFQEDHNVLTILQHS
LESSILEAYSYCETARELWETLENVYGNVSNLTRVFEVKKTINNLTQEDLEFTKHFGKFRSLWAELEMLRPITVDSAILN
ERKEQDKVFGLLLSLNHAFNDLIKHLLxVDKLPSLENVCSQVQKEQGSLRLFRGKGELLTAHEGIYKSEERKAWVCDHCK
KKGHMKDKCWILHPHLKPAKLKANISQEVASDQGEVVRKSNLEALIRSIASLKESGTSFFTYEPSKTLKESDTSFFTSEP
SKMLVIDSGASHHMINNPSLIDSIKLALGNVVIANADKVPVKGIGDLNLFDKKSKALFMPSFTLTLLSVKRATNDLNCYT
IFGPSSVHFQDIKTRRVLGKGDAKGDLYVFEKTPLSDCTSVSLNSCLASNLNVAWHARLGHPHARAFILMLRNVSFDNST
CESCILGKHYKSIFPKSLTIYENCFDLVHSDVWTFPCISMDNKKxFVTFIDEKSKYTWITLLQSKNLVIDEFINFxNYVT
NYFNAKIKVLRSGNGGEYTSHKFKEYLAKHGIIHQTSCPYIPQQNGVAERKNRHLMEVARSMMFHTNVTKKFxGDAVMTA
CYLINRTPTKVLQDVSPFEVLNKTKLSLDHLRVFGCVCFVLVSGDQRNKLDAKSTRCMFIGYSTTQKRYKCYDPINQRLY
VSRDVKFFEERGYYEKKDWNSLADLSTPSTDRATSLQFLLDHLGVTPSSEREIKTRDLVEEPVVLDQDHEQEETPNLQQD
GDVSGIPTYDDVDILTQHEDVSAQELTDQHTTTIQSELPRQATSTLRRSTRIKRKSSRLYYNNKAVAHPIQAVCSLALLP
QDHQAFLGKIEENFVPQTYEEAKESEEWMIAVADETGAMIRNHTWDEEELPQRKSAVSSKWVFRIKYLSNCEIERHKARL
VARGFTQTYGRDYTETFDPVAKLHTVRVVLSFATNLSWDLWQVNVKNAFLQGELEEEVYMTPPPGLEDSIALGKVLRLRK
AIYGLKQSPRVWYHKLSTTLKEKGFKKSEADHTLFALQSDQGIIVVLIYVDDIIISGDNKEGIHDTKLxLKSTLDIKYLG
ELKYFLGIEVCRSLEGLFLSQRKYTLDLLNETGKLGSKPAKTPLVDGYTVKRTGEKKKNNATIDPLNEPYEDFSQYRRLV
GKLIYLTITRPDLCFAVHQVSQHMHAPTKYHWNMLERILRYIKGSPGQGIWMGKSDSTEIVGYCDADYGRDTTDRKSTTG
YCTFIGGNLVTWKTKKQKIVSCSSAESEYRAMRKLTNELTWLTTLLKDFGIESSSPITMHCDNQAAIHIATNSVFHERTK
HIEVDCHKVHEKIDEGMILSCYTDTKDNLTDIFTKGASRKVCEHIYNKLGRVDLTRP
>Copia2_Dmoj#LTR/Copia 184-4004 via tfasty with Copia11-NVi, 1 frameshift and 1 stopcodon. [Drosophila mojavensis]
MEEDDDVLAVCEGSLTCPTQESATYERDSKRFLKADKTARKIIIHSIERRPMELIVSCKTAREMWIKLNSVYDMKSEENL
SAIQKQFFDFKWIESESVDYNISKLEVLWSKMKNLGSAVPETMLMSRILSSLPQKFNYFHSAWDSVEDSKRTLNNLTTRL
MTEEMRSKEQEVVPEESTALVAGNGKNKREHENKKKIMKCYNCGVMGHLKKDCYRCYICKKKGHKSNTCHQRRNAGSQAE
NNQGELGESSRKGLIASRDGREDDVWVIDSGASDHMSRRRDWYSTYEEFLEPQRIGVGNGKYITAHGKGNIDIETYVNNN
KRATTMFNVLYVPEIVYNLFSIMSAAKRGVDCLIKNKGTQCLLRRDNKIIATGSRFGNLLKLDANVLMPKLCNLTRKIES
KESDSLQVWHERFCHQNVRHVRDYLKNKNIVFLENDFFCEGCAYGKQHRLTFHKNIDRATKTREIIHTDVCGPIEVESIG
KKLYFVSFKDDYSSYREVYFIRHKSEVFEKLQIFIQAIQNQFHENIKEIHSDGGREYINKEVKLFFNKKGIKHIVNAPYT
PEQNGVAERENRTIIEAARSMLHSNSELPLFLWAEAVNTAVYVINRTGPTKHGNKTPYELWFKKEPDIGNLKIFGTECFV
HVPKEKRRKLDKKSIKGFIVGYVENCKGYRVYVPNMRDVIISRDVCFKPENFTAQFKKPEILVDNSESETNESEYENNKI
EDESTEHNNSEMGRRLRDRSQIRMPDFYGCPVTFITQSLPLNYNEALKSDDKEYWQTAMQEEVNSLHENGTWVLVPKPEN
QKVINSRWVYTKKLNPDGSERYKARLVIKGYSQKEGIDYKETFRPVVRFDTVRFLLSVAAQENLFLGQFDVKTSFLYGTL
KENIYMHQPEGFEDGTSSVCKLLKSLYGLKQAPRCWTEHFANVIKNLGFTQSIADPCFYIYSKNNDRILLTMYVDDGLIA
ASNEFLIDNLFENLSKEFKITNTKNVTCFLGIEILKQPNGSIFIYxGNYIRKILEKFNIINANIVSTPVECYYDENVSEQ
NNCNAPYREAVGNLMFLQVVSRPDIMFSVNVVSRELENPKQHHWTLVKRIFRYLKGTMDLGILYSKNNNIFETYSDADYA
GDKKTRKSTSGILCKYANAAITWQSKKQQCVALSTTEAEYVSAALASKEMIWLKKLFFDCNINLSNYILFIDNISAIKLI
KNPEFHQRSKHIDVKYHFVRDLFEKDEIDVRYVKSEEQIADIFTKALPKPRFLYLREKLGMKNKGQICYRDVEF
>COP12_MT#LTR/Copia 76-4044  [Medicago truncatula]
MASGSNAVITVPQFSGESYHIWVVKMKSCLKSFGLWDYVDEDKQVPPLQANPTVAQMKHHEEEKLKKEKAVSVLHSALAD
DVFTGIMHLETAKQIWDELDERYAGDERVRSIKLLTLKREFEMLKMKEHESVKEYTSKLSHLVNQMRLHGEVVDDSKVVE
KMLISLPDKFEAKVAAIEESCDLKKLTVSEMVSKLTAHEQRFSMRMDDVSDGAFQAKHKQFGVGQKKKNYKHGGDQKGKN
KDDGSSSESAAKDKFPPCLTCKRTNHLTKDCFYKGKPQIKCNHCNRWGHREKFCRLKQNQSQPQHAHQVNFTDEQAHEDH
LFMATHTSSSSSKDVWYVDSGCTIHMANEPSLFTSLDKAVQTKVKIGNGKYVQAKGKGIVSVHTSKGPKYIHDVLLIPDL
SQNLLSVAQLLKKGYSISFKNNVCVIMDSTDSEVVKVEMCGNSFPLSLNQVNQTALVSKHDDSALWHKRYGHFNFNALKY
LQSHDMVRDMPEINCINDLCDACQLGKMHRKSFQSTNVTRAKEKLELVHTDLCGPMSVPSLSHNKYFLLFIDDLTRMTWV
YFLTSKAQTFNVFKKFRAMVESQSGCKIKALRSDNGKEYTSNEFNLFCEDMGIVHQLTVSYTPQQNGVSERKNRTVMEMA
RCLIAEKQLPKSFWAEAVYTAVYLLNRLPTRAVQGKTPIEAWIGVKPSAKHLKVFGSICYVHVVAAKRSKLDDKAEMGIF
LGYAASSKGYRVYNLKTKQIVISRDIDVDENAYWDWENDEVQRSTKSAESAHDKQEHTTNEDENQIAESDSLILKSKSLS
EVYENCNFVENEPSSFEEASLITEWKDAMKEELLAINKNGTWELTQRPKDKNVIGVKWVYRTKLNPDGSIHKHKARLVVK
GYSQMAGIDYGDTFAPVARHETIRLIVALSAQCGWKIFHLDVKSAFLNGILEEEIYVEQPAGFIVAGYEDSVYRLHKALY
GLKQAPRAWYSRIDSHFLQNDFRRSQNEPTLYVKKCGNGKRIIVSLYVDDLLITGNDIDEINKFKKSMLEVFEMTDLGLM
KYFLGMELHQLDDGIFLSQKKYANDVLKKFKLESCKSVSTPLAVNEKLSKSDGDAKADVTQYRSLIGCLLYLTATRPDLM
FSASLLSRFMHSPSVTHLGVGKRVLRYIRGTTDFGIWYNKGDSKIEGFVDSDWAGSIDDSKSTSGYVFSLGSGVFSWNSK
KQDVVAQSSAEAEYIAAAAASNQAIWIKKVLSDLNHVQEEPIVLWCDNKSAIAIAKNPIQHGRTKHINVKFHAIREAEQN
GDVKLQHCSSEEQLADILTKALPSAKFMELRSKLGVFQKSFKE
>Copia15-NVi#LTR/Copia 93-4148  [Nasonia vitripennis]
MSQEHSNYHFTKFDGTNYQVWKFQMRAVLTANSVYDIVLGTKKRVRSGETGYDQEKEEKWLKDNAKAMCILSSAMEINQL
ESCITCETANEMWMKMTLIHEHKSATNRSTLLQKFHTCKMETSEPAIAFVTKIQNMARTLEDLGEKISEAGVIAKILGSL
PSKYSSLITAWDSVDSDKQNIDNLQERLIKEERRLSETEENETGAFTVSNVRHVNKASRETGNNQNTRREGYRNLSQVIC
HNCKKPGHIMRFCRRRRNTKGKQADTPKDKSDHVSAFVTTIDDNFSREKAATHQEIERLMKSDSSEIWIGDSGASRHMTY
RRDWFSSFTSEHGATIVLGNNKVCDVRGSGTIIIEKFLNGKWHRGRIENVLYIPELKKNLFSIGVCTALGYEVSFYDNVV
KICLDGSVVAQGEKQNNEIYRMFFRSVAQCEAHLSASSLQQWHERAGHVNRRTLQEMIKNGVIEGVKISDVEDFVCEACQ
MGKAHILPFKKEVEHRQWKMGECIYSDVCGPMLTNSIKGARYFVLFKDDASSYRLVYFIKHKSDVFDKFKEVERLIYNKF
NCRIKVLHTDNGREYCNGQMKKFLAQKGIRLETTAPYTPQQNGKVERENRTVVESARTMMLHRQVPKYLWAEAVNTAVYV
LNMTATSKRPETTPYECWIGRKPDYSHLKVFGVPAYAHVPKMLRDKLDAKAKKSIFVGYQDESRNYRLYDYKTRKVFVSR
NVTFVENENCCANEYQQVQATLPLPSCDGEEMVENPVDNAYQRISSDSTEGADESTADVTQEGPTTMKKTVNKQTTRKKN
DAVDPSIFSSCRQLRVRENIKKPERYEGNVTEYEPATYQEAIESPDATKWTQAIQEELLAHERNGTWTIVPRPQGRKVID
SRWIFKVQDPKAGKENRYKARLCARGFRQEYGIDFNETFSPVIRYDALRVMLAIATHRDLEIVQFDVTTAFLHGKLEEEV
YMKIPEGLQINSGKEEYVCRLNKSLYGLKQASRCWNETFKNFLFSLDFKCSDIDSSIFIAVKRNVKVFLLLFVDDGLVLT
EDKDVLSEILDSLRNKFQITVSDVDNFVGLKIVRDRVNKTMFLHQAEYASKVLEKFNMTDANSVSTPMEKNAISSEVQQH
SQQIEKLPYRELIGSLMFLTVVSRPDIAYAVNVLSRFLNNFNRTHWELAKRVLKYLKGSLHMGILYTSNESEPLLVGYCD
SDFAGDQLTRKSTSGFVFKMCGGPMTWNVGRQKDVALSTTEAEYVAASLASREAIWLRRLLSGVGCPCASATVLNVDNQS
AIKLVKNPVMHKRTKHIDIRCHFIREKYERGEIDVKYVSTECQLADVFTKALTRNCHERMCKGIGLVHLSA
>Copia-1_Adi#LTR/Copia 103-3989 via tfasty with Copia-1_NV, 87.8% SW:4629, 2 frameshifts and 3 stopcodons. [Acropora digitifera]
MLKLKTTILPSEDPPEEVKNEECYVKLIQFLDKSLSLVMRDAADDGRKALRILxEHYASQSKPRIIMLYTELTLLERGTN
ETVREYLIRAEKAITALRNAKETLSDGLIIAMILKGLPESYIPLAIHITQSTSEITFTEFKVQLGSFEETEKFNTKAKAD
QVMKTVSPTSSVCYGCRQSGHFVKDCPGKSEATKWCSYHKSIIHTDGECRRHNRRDRTKQAIFSEQTKTIEGEHSFAFHV
EDHTNRHHSNPTGVLLDTGATSHIVTTNAFTRVNGTFKPQEHCMELADGTKTMNVAVKRGDAEVTLKDVNGRYVKIVLKD
ALLIPSYPQDIFSVKAATSNAAELKFQQGHNELVHKDGTTFAIEEHGQLYYLNTVEPYDNTSDKVSVSHDIHTWHEILGH
CNFEDVIKSQGVVDGMKISGSSDKSKFNCDTCIQGKFVNNRNRGPDARATKPLEMVHTDLAGPIDPVSKEGFKYSIAFTD
DFSGTVFVYFLKSKSDTVxATETFMADCSRYGQVKCMRSDNGTEFTSDAFQMLLRERGIKHETSSPYSPHQNGTAERHWR
TLFKTGRCLLIEKQLPKSMWPYAIQIAAHIRNRCYNTRIKNTPYFMLTERKPDLPRMRVFGSECYAYNHNHKKLDSRCTK
GVFVGYDKSSPAYLVYHPDNGKVMKHRLIRFISKDSVEQQIQTDWLYEDSDLCKSPVSEAETANPDCNVDTNTPTGKDQN
KRNVVTHENDEQVASNPVQARRYPLRERNPPKYLAEFYTDQNDGNDLTNNSTDYCYKVYGVPQTYAEAMNSPRATEWRKA
MEEEMESLKENDTFELTTLPVGKSPVGGGEWVYTIKENAEGSETLKARYVAKGYSQVEGIDYQETFAPTANIASVRALTQ
LAAQYNLTVHQMDVKTAYLHAPIDQEIFMDQPEGFATMSGNEERMVYKLRKSLYGLKQSGRNWNKVLHKHLVGAGFDRNP
VDHCIYSKQVNNNLIIVLIRVDDLIVASDDMDLMNQFKEGMKCQFKMKDLGRISLFLGIDFDQSCGMIKMNQKRYILKML
NRFGMKDCKPRATPCEQKLGCDNDLMADPKKYREIIGSLIYAMICTRPDISWTVSKLSQKLSCPREEDMVAARHVLRYLR
GTIDYELCFKKCDGNLNLVAYSDADxASSLEDRRSTTGYCFSLSNHGPLISWTSRRQPTVALSTCEAEYIGMAATAQESL
HLTQLLNNIGRGSYKATKIYGDNRGAIDLSKNPVRKQRSKHIHIRHHFLREILLNGKIEIVYCPTEEMVADIFTKPATKV
KLNTFKKFLFGKAIK
>Copia-1_AC#LTR/Copia 31-4062  [Aplysia californica]
IVFCGDERRYELWETKFLGYMRIRGLNAVFKNLHEEIVDVDSDQNEEAYAELVQILDDRSLSLIIRYAKDDGRQALKILR
NHYLPKGKSRIISLYNELTSLINHSGESMTDYIIRAETAANSLKQAGETVSDSLLIAMVLKGLPARYQPFITVTTQREKA
QTFAEFKESLRNQEDTVTNSSDCSVMNIRSRTQAQRRHQQSPIAAARDQETRPAQSRWCNECKSKTHDTQFCRNRKRWCD
HCKVRNHDTKYCRKFKSSSAKYVNSSASESNDFTFFVGSNAKFNEIHVADTLLVDSGASSHIINDKNKFVTFNDPFMPAN
HVIELADGRKLTDMAQGQGDAVISLRDTQGIVHKVTLKNALYIPTFSQDIFSVPSAVGKSSDTKIEFSKDSGILSSGNSN
FEIKKKGSLYYLNSLHHHNAVRSLDEWHNILGHCNKQDIISLEKCVNGMTIRDPVVTDENDNCDVCLLGKMTQTKNRQPD
TRARAILEKVHVDLAGPIGPTAKDNFKYALCCVDDFSGLCNVYFLQKKSDTCHAFQKFLAEMSPFGDVKCVRSDGGGEFT
SNEFESLLVRNKIKHERSSPHSPHQNGTAERSWRTLFEMARCLLISAKLPKELWTFSVMYAAYIRNRCFNHRLKCTPFEV
FTGKKPDLSKLQEFGRECFAFVQNPRKLDDRSERGIFLGFDKGSPAYLVYFHETQKIKKVRIVKFRRSLKVDVKNENDSV
PFHVTYEEEFIPIPLTKQTLSDVSPAVDNVESTNHEIENSRDESVARSSNSQSDIVSDTGDSQDGKNRPKRSITKPKHLN
DYYVDDEIDHYLNVTTTHYCYAIHDVPKSYKEAISCVSADKWQNAMQEEMRTLEENDTFQLTPLPPGREAVGGRWVFAIK
EGQSDEAQYKARFVAKGYSQIPDIDYTETFSPTARMTSIRTLLQLSVCNDMNIHQMDVKAAFLNAPIDTETYVEQPEGFQ
AKGHNGEQLVWKLKKSLYGLKQSGRNWNQTLYVHLVEQGFSQSLSDPCVYVKKYSDKKSQEEVRIILIVWVDDLLIASQN
KIALETVKTNLKTNFQMKDMGEIHNFLGIEFDRQKDTMTMSQSHYIEKLLRRFGMEDCKPRLTPSEVNTSKLNNENCSDK
EARRYREIVGGLIYIMTATRPDLSFIVTKLSQFMAKPDTYHMIMAKHVLRYLKGTVDQKLIFRKTDKSLDLVGFCDADWG
SSDDRKSITGYGFELSQGGPLISWKSKKQPTVALSTCEAEYMALAAATQEGRFLKAVLNDMVDLNVTRFTLHCDNQGAIA
LAKNPVHHKRSKHIDIRFHFIRNEINNDKLQLIYVQSEENIADVFTKPANRFRNDKFIALLMGK
>Copia-1_AL#LTR/Copia 5-4097 via tfasty with Copia-12_PR, 69.5% SW:2514, 3 frameshifts and 3 stopcodons. [Albugo laibachii]
MNPSSNSMADEMLKQNNYFTWEFNTRMKLMKKGLLDHIDGVKTPDDESVESVENVELWKVNDLRAFAIVASSISPNLQSM
VRGASTAAQVWEILRKKILRNSVHNRVEKRRKLHEFKMKKDTDLMEHFFEFDEMCMKMQASRESMNLDDQFIILLGSLSD
DYDIIVKIIVNTQGMDLFTAKEMLLREYEGIFRKERSECALKATNEIKLWCVKSESDEIFRCGKINSNRKFxSRRSHQRY
CAFQGKCFNCNKFGHRKVDCRKNRTTTKEESAFSCYTGSYGRWILDSRASSDMCPFHDDFTEICALGKLLLISVANGLQV
EAQRIGTIRVMLHNLxPIRIEDVLYVPQLDRRLLSITALAGKGLDVTFSGSVCRIEDNEAVIVEVSKTGKLFILQCKRVE
DANVAGHVERTRPVSFDIWHARLGHLQLRKLKNMEDCVDGLTLKQVEKNNDEDDICEGCAYEKSSIKAFPRSHYGTLKTQ
SLLEMIHSDVMGPMHTSSQGGARYMVTFIDDYSRYVMVYFIKQKSQIIDYFVEYKSLVENQFNKKIKCIRTDNGGEYSNH
LFAKICQQAGIRHLMTVPHSPQQNGLAERMNRTITERVRSMLHHMHVDQKWWAEAMNTAAYITNRLPCAAHPDKTPFQIC
FGHRPNVNGMRVFGAIGYAHIAKARRKKLEKKSFPCMFLGYSDDIKGYRVWNMDSKRVELTRSAQFQESPQPKYIDVNFN
HGNDVPPRHLDSDDDHDIPDTRIMMPPVEQSVEPMDIDEEVAATELSRRPTTDDTDAIMVPHNPQQAIVPRGRYYVSSGY
TPFRPFEHDTLRHGDNSHTMVPYETSESIVPHTTEEIRPPKRHRIEYDQANVVLEALTTYYDAVKSPEAEFWKKAIAEEL
KAFKEKKTWAMQKKEYNQKVIGTKWVFTIKRNEHGEIQRYKARLVALGYRQTYSFDYRETYSPVANMNSIKVFLSICCQE
GFLVHQYDVDTAFLNGYPEEEVFIYPPRGVEGKQNQICKLNRNLYGLKQSAATWFKTIAEVFTTMGFLQCxSDSCIFVRQ
QGNSIIHIKLYVDGMLVGAKTTEEIEDIHTKLSNRFKMKDLGNARFVLGIEVNYEREARKLKINQESSIRRMVERFNQEK
AKSVTNPCLQGQFLPKMEQEDPRMKNRPYRSLVGSLLYISTGTRPDIAFSVCQLSRHLEKPSEEHWNAAIRVLRYLKTTA
SNGIIYQGRKNWMQTSAYSDADWASNKDSRKSMSGTMAMINESPVIFKSKYQQSVALSTAEAEYMALSLCVQEVLWLNNL
LTEMKLQVRYPVKIYEDNQSAIALANNDRYQSRAKHIDSRHHYVRQHVKLNNITLEYIESRKQLADFLTKALSTGQFQGS
PSLI
>Copia-1_BD#LTR/Copia 29-4374 via tfasty with ATCOPI1, 3 frameshifts and 3 stopcodons. [Brachypodium distachyon]
MTSPSTAASSVGALISGTSGVLSSSGALSSSSVFPLFNTAMATSSAPFNFANLITIKLTTENYLLCHAQMLPILRSYLLM
GFIDGTFPCPAQTIPNPQAADAGASPTLPNPAFQAWHQQDQEFLSAILSSLTEGVVGMVLLASTSYEAWTTLSSSFASQS
TARSMQIHHQLSAIKKQNLSAAVFFNKVKVLSDTLTTIGQPLRPEEFIFLSLAGLDSDYDALVEVVSSQTTPMSVRDLYA
QLMNTEQRIESRKAELAADFHSANAAGRGNTSGGKFSYQQGKGKPIYSNKSVHAPLFPVQGGGNRGGNERDRNNNRGNDN
GDRPQLRCQLCDRDGHIASRCFKRFQRDFLGVGNDGRYTDRQVAYANQGGQTSSYSVDASWYADTGTTDHLTNELEKLTT
KENYHGKDQVHTANGSGMHISHIGHSILPTSTSQPLHLNNVLHVLVVTRNLLSVRKLTLDNPVFVEFHPNDIIVKDRDTR
ETLLRGRCRGSLYPLHPPPVKQIFSGVRVSSSQWHSRLGHPAIPIVKHVLLRHSLPSVSVKDSPIVCDACQQGKSHQLPF
SLSSHVTSSPLELIFSDVxGPAQTSVSGHQYYVSFIDSYSRFTWVYLLKHKSDVFHVFLQFQKHVERLLDKKIISVQSDW
GSEYHHLNKFFQDLGITHRVSCPHTHQQNGTAERKHHHIVETGLTLLAHASVPFRFWSDAFTTACFLINHTPSRVISMQT
PLERLLGEVPDYTFLKIFGCACWPHLRPYNNCKLEFRSKKCVFLGYSSLHKGYKCLHVPSNRVYISRDVIFDETVFPFSH
LPATSSSPPTSATTPRSDQFDDVAYMPLLLPNHGAGTGRGACLELLDDADDVSPNISTPESPTADSATAPAVDSAALSAT
ADVAAAASPSPSPPPSPPSPPLARRTRLQHGITKPHVHTDGTVAWHTTVLADLRHTEPCDFREALDQPHWRAAMHDEFSA
LLRNKTWHLVPSAAPGTNIIDSRWVFKIKRHADGSIERYKACLVPKGFKQRYGLDYEDTFSPVVKPTTIRLLLSIAVNRG
WHLRQLDIQNAFLYGILEEEVYMHQPPGFVDPDHPGHLCRLDKALYGMKQAPRAWHARLSSALHRLDFSASSTDTSLFIL
HRPDVVIYLLVYVDDMIVISSSSVASDQLVSQLRSDFAVKDLGPLHYFLGLEVLRSSGRGLLLSQRKYALELLRRAGMLK
CQPANTPMVATEKLSAEDGILLTSNEATRYCSIVGGLQYLTMTRPDLSFSVNKVCRFLHAPRSTHWNWVKRILRYVQxSL
SHNLRIQPSASSLLSAFSDADWAGNIDDRRSTGGYAFFFGNNLIAWSARKQPTVSRSSTESEYKALANATAELIWVQSLL
QELNVQQTKSPVLWxDNIGATYLFSNLVFHARTKHIEVDFHFVRERVAQKLLQIRFISSKDQLADVFTKPLPLPAFQTCK
HNLNLIDSG
>Copia-1_Ano#LTR/Copia 440-4492  [Anolis carolinensis]
MALPPVQVSSLPFERLNDKNWLSWSVRFKAYLVSQNLWKIIENLPAQLTPAEQHQDERALALLQLSVMDSLLVHLHNIPH
AQTAWNLFKDMFQRQSSGSKIILMRQLFNLKHEEGTPVQSHITKVVALFSELRARDIIFPPEQQALILMGSLSRSYYAFI
DSLHGIPDTDLTIPFISGKIMEFEAQRKLRSVDSIQKNLGTVSKDTACKDTACVAKPKSQVVCYKCKKKGHYAKNCWQNP
GQWKNKQVERPSSSKDFQHAFLVTSKMDTMNSFIIDSGCSQHLVKCKELLSNVRDSDINFISLADDRKVQVISCGDLYVD
RLKCTFENVYYVKEIVYNILSANILLDEGFEVSLKKEKSMLVDPQGNEVKLIQENGFFILKSSDNANMSACINQIPDNPR
PLHSKCIHEFHRKMGHLSWQYLRQTAELCEIPIQGCKNFLDCEICASENLKKAPIAKYSTRVSKRILELVHMDISGPHPT
SVGGSKYFLILVDDFSRLKFTFFLKTKGEVFQKLSVWLKLMQTQFPKYPVKAFQSDRGAEFMSKQMQNLFKKFGIVHRLT
NPYSPSENGVAERWIGVVKVVARKMLRDASLSDGLWAEAVANATYVLNRSFCRSVNSIPYVLFFGKIPDLSSIRVFGSDS
FVLIPSQQRHKKDAIWKKLKYLGPASESKGWRFWCGDNRVIVSRNVKFQQYSGWERIHSNKEVFVPFETAQIHTPQVTQP
TTQQVSQQTATQTNTQVQSVSQQTAQQNIQPSTSQDTQLGTQVRVEQESTTSQLQVSSPVIKQSESQKRKAEVYSSESTS
SSSSESDETNGGDSTRTIPRRSSRKNKGIPPKRYHCEAVKIQEHDWSEPHSYKEMLKRDETERNFWLKAMQSEFDSLKDL
QVMVKSETPDNVKVLSCRWVYRRKQTNDGGFLYKARLVARGFEQIYGENFNEIFSPTVSGEALRISLAIASNRNLKVKHF
DVNPAYLHANLEEKVYISAIPGFETDLPEGSYLLQKSLYGLKQSARNWNLHLDKVLTKLDFVANKFDPCLYSKGSGNTQM
FVVIYVDDVLCIGSEEQIQEVFQSLNKELKIKNLGDVNKYLGINIVRNEGGFELNQTDKIYDLLRRTRMENANTVNTPMA
LQFLQHVDGEVFDNNFIYRSVIGSLLYIANNTRPDISFAVGILSQRIQNPSHTDWEGVKRILRYLKQTAGKVFRICPDDK
ESLTIHCDSSFANLKENKSITGFVIKYANTPVCWKSRRQKIVALSTGEAEFSALSDALTSAEWLESLIKSLNIDLELPMQ
VFVDSQTCIALSNCQNMKTRSRYINVRYSNVQQFVKDKRIVLNYIPSVENVADIFTKPLSFEKHIMSFVRN
>Copia53-PTR#LTR/Copia 654-4569 via tfasty with TTO1_NT_716-4732, 1 frameshift and 4 stopcodons. [Populus trichocarpa]
MEDEIKAARIEKFDGTNFGYWKMQIEDYLYGKKLYLLLLGSKPKNMQEEDxLLLDRQVLGIIRLSLSRRVAHNVTKERST
TRLMEALSGMYEKPSANNKIHLMKKLFNLKMTEGISVTQHLNNFNTITNQLSSVEIEFDDEIRALILLASLPSSWEGMRT
AVSNSAGKSKLKYDDIRDLILAEEVRRKDSGENSSSGSALNINTQGRRQDRGLSRGRSKSRCRSKSKFGPRKxVECWNCG
KPGHFMRSCTKLKKPEADSANATTDEVQDALILAVQSPIDDWILDSGASFHCTPHHEMMQNYVAGDHGVVYLADGQPMDI
VGIGDVQIKTMNGSTWNLQNVRHVPGLKKKLISVGQLDDSGHSILFSGGIWKVSKGAMVLARGKKTGTLYMTTRFADIIA
STEAENQAQLWHCRLGHMSQKGMKILQSKGKLPELKNIDLDICESCVLGKQKKLSFLKVGRTLRPRKLELVHTDLWGPSL
VASLGGSRYYVTFIDDFSRKVLVYFLKNKSNVFETFKKWKTMVETESGLKLKCLRSDNGGEYIDGGFKEYCAVNGIRMEK
TVPGTPQQNGIAERMNRTINERARSMRLHSGLPQTFWADAVHTAVYLINHGPSVPLEFRLPEEVWRGKEVQLSHLKVFRC
VSYVHIDSDARNKLDAKSKKCFFIGYGDEEFGFRFWDDQNRKIIRSRNVISNEKVLYKDRSSVETDMADSDTSPQKSEFI
RLEGLPDVTEQNRNQESLQEDSNTSVPTTTQEDAEPSEPTVYVRRSSRTVKPPQWFTLLLNYILLTDGGELLSYEESLQD
GNSSEWELAMKDEMSSLLKNKTWELTTLPEGKKALQNKWVYRVKTEHDGSKRFKARLVVKGFxQKKGIDYSEVFSPIVKL
TTIRVVLGIVAAxNLHLEQLDVKTAFLHGELEEDIYMQQPEGFATQGKENQVCKLKKSLYGLKQAPRQWYKKFDNFMCSL
GYTRCQADHCCYVKYFDNSYIILLLYVDDMLIAGSSIEEIDKLKQQLSKQFEMKDLGAAKQILGMIIIRDKDKGILKLSQ
IEYVKKVLNRFSMDNAKPVSTPLGNHFKLSKDQSPKTELECGYMDMIPYASAIDSLMYAMVCTRPDIAHAVGVVSRYMSN
PGKQHWEAVKWIMRYLKGFLETCLSFHSGGLKLEGFVDADLAGDVDSRKSTTGYVYTLGGTAVSWSSTLQKIVTLSTTEA
EYVAVSESAKEIVWLQSFLKELGKMDGKGTLYSDSQSAIFLAKNPAFHSKTKHIQIKYHFIRQLLDDEQLTLEKICGSKN
PADMLTKGVTLDKLKLCKTSVGLQG
>Copia17-PTR#LTR/Copia 46-4525 via tfasty with ATCopia23_39-4058, 1 frameshift and 2 stopcodons. [Populus trichocarpa]
MAAAGQSSLSEVTSQPGTASHGSLSGGTEGTSHQITRHKLNGYNYLQWSSSIMMFICGKGRDDYLTGDIIIPEKNDPMFR
TWKTENHMVISWLINSMTNEIGENFLLYGTAKEIWEATIETYSSSENTSELFEIEAVLHDLHQGELSITQYFNILCRHWQ
HLDMFEIHSWNCPEDTVLYRRIVEQKRTFKFLLGLNKNLDEVRGRIMGTKPLPNLREAFSEVRREESRKKVMMGPHNSAH
IMEGSALTARGYSNSNYYNRQRKGRPWCDHCNKPGHVKENCWKIHGKPADWKPSKSINDKDRRANNVISDNNRDKNTILP
TETSPFSKEQLEILQKLFNQNSLSQPSMSTSGSGSGLSAQKGKFSAALTVSKKHSSPWIIDSGASDHMTRDATLLNEYNQ
CTNNSTVRIADGSSSQVKGIGLSRLSRDMILNSILHVPNLDCNLLSISKLTRDLNCVAKFFPHLCIFQDLDTGKKIGSAK
MCSGLYLLKSEIPLKQTQNRSYVSSKGQLALNFHVNKDSEVLLWHYRLGHPNSMYLEKLFPSFFSNKSSQSFKCEICQLS
KNVRSSYPTISYKPSHPFAMIHSDIWGPSQVHNITGTQWFVSFVDDHTRLTWLFLMKEKSEVSQIFQNFHAMIQTQFQTK
IQILKTDNAKEYFNSSLNTYCLNQGIIHISSCYTPQQNGVAERKNRHLLEVARSLMLSTHVPKQFxGEAILTATYLINRM
PSRVLNFRTPSQVLLQAFPHTKLLSSLDPKVFGCSVFVHIHHREKLDPTSLKCIFIGYSPHQKGYKYYSPVLKKDYTSMD
VTFFEHQVYYPKSDLHGATMREYQNWDIQSNHVINSGDNQxSLVQSHLSPYTTPPASIQSVPAPPASVQSPDQIHPTPKQ
ITNHELLTYSRRKKLGKEIEHTIPLAHDQDSEPSPDSAPIYSSMETSDCENTAFVIDDSNIPIALRKGVRSCTSHPISKF
VSYEGLSPTYHAFVSAIDSVQIPKSIEEALKDSGWRKAVSDEISALNKNRTWEISELPPGKKPVGCKWLFTIKHKVDGSI
ERLKARLVAKGFTQSYGIDYQETFAPVAKLNTIRVLLSLAANQDWPLHQLDIKNAFLNGDLEEVYMEIPPGLETSSNVNR
VCRLKKSLYGLKQSPRAWFNRFTKTVAQYGYSQCQADHTLFVKTSPEKEIAILIVYVDDIILTGNYEEELVRLKKLLAKE
FEIKDLGYLKYFLGMEVARSRKDIYVSQRKYVLDLLKETGMLGCKPADTPMDSTKKIGAENDSIPVDRGRYQRLVGRLIY
LSHTRPDIGFAVSFVSQFMNNPTEDHMAAVNRILRYLKMTSGRGLLYKKCDNRIIEIYTDADWAGNIIDRRSTSGYCSYV
WGNLVTWRSKKQHVVSRSSAESELRALALGICEGMWIQRLLKELGMESLTPIQMHCDNQAAISIAKNPVHHDRTKHIEID
RHFITEKIEKNIVHLTYTPTRSQIADILTKALPRTNFEELSHKLGMYNIYNPA
>Copia17-NVi#LTR/Copia 1914-7455 via tfasty with Copia8-NVi (plus improvement), 4 frameshifts and 1 stopcodon. [Nasonia vitripennis]
MLICAILGQFLSEDDCQFLRKIWPPGEKVMLVSEPRISERMVTEERLKAAMQEIEKTVETKVKTTLEWITEQQKEFFDMQ
AKLNKELIESTLSKMTEGIQKQKEIEAPKQDKVENDTKVRSWLRWATTKTTPGTKAAPKIKNIEDVDIELKIRQGVKEYE
ERNRLGADLRLKPTIDESLLEEENFVVPIRRPGPRKRELGESISALRHLHCLGRQRNQDEELEEGEVNEAQDWEGKQIIP
GKIVMTTGKSPKTQMDLIDRHEAVTRRANKTTSKYDMNHIGISDGVNGVSNNNLNIVKIIEDKIKESLAKDNKGGNGGIN
PTNDSNKNKIIIEVSSKESNVMRSYKLTTGMKFEIFEDYLMSEVKTKRLDYVFDKKKCEDVNEPKLIENKHRVRDIIINH
IDIEYYTKMIDIKETIEMVEKLKELKRFETRIMRLTARNDLNNLRYDVNKHKASEFWDLFEEKVKVYENTPNADKLPEKR
xKDLFIQAIKDAVPNVTVTDCLLEESTGREMTYSQLKKFILQEEALRPQRQPPKSAFNAGFRGGKRGEQIQRRGKDDVRY
YSCGKNGHISRDCPTPGEVVCYNCNKVGNHISSQLCKRAKLEPAHNQGRGRPDWTGQGGHNQGSTRGGGAGSINRGRGGN
RGRGGRSARGRGTSAHFGYMENPEQDQYYQGKLNCNLIDRNLKYNKITKFIADSGATEHLSKSKLIFERLSENEVNEINC
ANKNNYLSTQGKGYVRIRTENGKELIMSDVLYSNELSENLLSLKKFVDQGLEVYLNNKVINIFDPEIPREFMTGKYENPF
WLIKLKIAPKGKNEIEVSKAFALISSLEQNHPYNTRSKGNELSQVEERVESKNEENMEKLETYENTENSSLGDRISDLLH
TATDRKVHVMEDCNGSNDNLEIDYKSRSCESINKIDKAMIWHLRLGHVSAMYIRKLAEQFPEILDIKGVNVEESVIKCEV
CLITKSCKLPFNKIRTRASKPLQIVHADTMGPISPVSFPKGYKFVVVFIDDYSRxGLTYPIRQKTEVSKCLVEFIRSVRN
VLGSDEKFCYLRCDRGTEFTGNAMIDVLDKFGAELQLACPDTPEDNGVAERFNRTIQSKIRAWMFDSGLPSTMWDLAVKA
SVYVYNRTPHKSYEMKIPINLLNSKIDSNLRQIKRFGCVAYVRATRNEGTTFSVKGIRSFIVGYIPTGYILYTPEEKRLY
ESRHVKCIEEVVYKDYFDKRESDEELFKIDIEDEVDCQQVEQERKSQENMSQVDVIDVNKLVSSEEVESNDKVKETKRKR
GRPKKLTKQSVMFCSEANENTEQTETRDFALHALLAKIQGDPQTYREAVSSKDSEHWFKSIQVELDLIKDKEVYEIIERP
KGRIRMGKPNVIDSRWVFKRKIDKQEKTKFKSRLVIRGFKDKNAYELSETYAPVSRMSLIRSFLVIANKYDLKLKQLDVE
TAFLYGDLSEEILMEIPEGIMVSKEYRKKFVWKLKKALYGLKISPKKWNNKFTAVMNELRFISSDMDPCLFFRQSNYGVM
IVVLYVDDILLAGNNMTELTEFSSKLSRKFKIKDLGKPKEFLGIKIERCEEKKIIKLNQTKFIDNMLKRFGFDKIRSVNT
PIASTQITNKDRKTRETEYIVSEAVNNRLYREAVGSLLYLAGVTRPDISFAVNVLSRHQVAPTKYEWKMVQRVFQYLIGT
RHYSLIYSGKENYMKAYSDASLSDCGGSLTTCGYAIQLYGDTVDWKTHKQQSLALSTCQAEYVAMSEACQAILALHNSVC
FILRNDMYPIDLFCDNMAAQACANTDGGNRLRHMVERKEHYIKECVKRGYVKITWVKSADQLADIFTKALSFPVHEKLSL
LLLNMIYN
>Copia22-PTR#LTR/Copia 21-4025 via tfasty with TONT1_LE, 3 stopcodons. [Populus trichocarpa]
METNMNSSVKVAKDVKIQLDRFDGTNYTRWMDKMIFLLSSLKIYYILDLNLSALPEPQEDESATIKTTRVKREEDEVLCR
GHILNTLTSRLYDIFSKLKSPKEIRAALETHYKQEKSGSDRFLALKFFEYEITDNKPIMDQVHEIQMLISKLSDLDIKVP
DSLQVGAVLSKLPPSWNEYRKKMLHSTDNYTFEQFQTHLQIEVQSRMRELQATNSKVNLVTETGLTMTQNNLKVQKKGNK
FKKKQYANKKHRVCFHCGNKGHYIKECRFKNFNKKGGSFKVNMVEKDEVRELVAMVSNIQIRMITELNMATNVVKTxDWW
LDSGATVHVCNNKAWFKTYEELKKPEEVLMGNHNSAKVLGKGTIELYFTSGQKLSLLNVFHVLEIRKNLVSASLLSKKGF
KIVLESDKVIVTKSGMFVGKGYSCDGMFKFSINEINVISAYMVESTSLLWHARLGHLNYRYLKYMCKHGYISYQHNNKEK
CEVCIxAKMTKKPFPKVERNSQLLELVHSDICEINGMLTRGGKRYFITFIDDYSRFTYVYLLRTKDEAFGKFKEFNKMVE
NQKERQIKVLRSDRGGEYFSKEFSTFYEENGIIHQMTAPYTPQHNGLAERKNRTLVDMVNAMLLNAKLPNHLWGEALLTA
CHIHNRVLSKKSIISPYEAWNGRKPNLNYFKVWGCVAFYKSSDPQRTKLGPRGLKSVFVGYAQNSKAYRLLDLETNVIVE
SIHVEFIEYKFISDSNVQEPNLKVMTPSSTLSEKRKNLEVIGSSEPRRSQRVRKEKHIDTDFISTDSIVFLVEGDINTIL
KKTPMILNIEDEPKIFGQAMSSRDVAFLKEAVNDEMDSILSNNTWILVDLPPGSKPIGCKWVFKRKYNTDGSIQTFKARL
VAKGFTQKEGVDYFDTYSPVARITSIRVLFALASIYKLYVHQMDVKTAFLNGDLKEEVYMEQPEGFILPGNEEKVCKLVK
SLYGLKQAPKQWHEKFDKSILLNGFHHNGADKCMYSKFTKDSGVIICLYVDDMLIFSTNIIGIVETKRYLTIIFKMKDLG
EVDTILGIKVKKHSNGYALNQSHYIEKMLDKFKHLNIKEANNPFDFSMKLNDYCDKAIAQLEYACAIGSLMYVMHCTRPD
IAFAIYKLSRYTSKLNTDHWKAIARVFGYLKRTIDLGLFYSDFPAMMEGYSDASWMTSSSDNKSTSxWIFSLEGGAISWA
SKKQTCISHSTMESEFIAIAAAGKEAEWLRNMLFDIKLWPQPMSAISLYCDSAATMSRAYSNIYNGKSRHISIRHGYIRE
LITNGVITIVYVKSVNNLADPLTKGLSRDMVRKTTNGMGLKLVIKDTSNRNPTSD
>Copia41-PTR#LTR/Copia 459-4595 [Populus trichocarpa]
MAESTFVQAAIPRFDGHYDHWSMLMENFLRSKEYWPIVEAGIEEPAVTVVLTETQKTELEGRRLKDLKAKNYLFQAIDRP
ILETILSKETSKDIWDSMKLKYQGSTRVKRAQLQALRRDFETLQMQIGEPVTNYCARTMEICNKMRFHGEKMDDNVIVEK
ILRSLSPKFDYVACSIEESRDVEKLSIDEMQSSLLVHEQKMIRGSHTNEQALKATNYSHSSNFRGRGRGRGRDGNRDRGD
GYRNQFRAVDNFGRGRGNFRGVEGNKGNYRGVEGQNRGKGDKSKVECFRCHKFGHYRSECYARIHNDKAEMSHFAERREE
ETLLMAVETTQKLKQGSREQQQGSEIWFVDTGCSNHMCGCKSSFIYLNEDFNSTISFGDNSTVNALGKGDIEIRTKNGFV
ETISDVLYVPDLKSNLLSAGQLQEKGYEINIKNGICEIYDPLRGSIAVVKMSSNRLFPLEIVISQPCFIAEIENPTWLWH
FRYGHLNFSGLKTLQQKNMVKGLPEIDIPSQICEDCVVSKQHRSPFPQGKSWRAKHALELVHSDICGPISPSSNGGKKYL
ITFIDDFTRKTWVYFLQHKAEAFYVFQSFKAKAENEAGKLIKTLRTDRGGEFCSTEFDVFCGEHGIRKELTASYTPQQNG
VSERKNRTILNMVRSLLARGKIPKEFWPEAVNWSIHVLNRSPTFSVQNMTPEEAWSGRKPNVEYFRIFGCIAYAHVSDEK
RKKLDDKGEKCVFLGMSECSKAYKLYNPLTKRIVTSRDVVFDEVQTWDWDRQQPMHADFEIDADLGPAAAAILQQPCSET
AAEIHSTTGAAAGNFPPTAVAPVAAAPPCPRIRKRPTWMEDYEVNGIEDPITYFALFADCDPMTFESAVKEEKWRQAMDD
EIDAIERNDTWELIDLPPGQKSIGVKWVFKTKLKANGEVDKYKARLVVKGYKQEYGIDYTEVFAPVARHDTIRLIIALAA
QNSWPIFQLDVKSAFLHGNLEEQVFVDQPLGHIKIGYEHKVYRLKKALYGLKQAPRAWYSRIESYFLREGFHKCPYEHSL
FVKIGDGGTLLIVCLYVDDLLFTGNDTDMFKDFKSSMMVEFEMSDLGLMHYFLGIEVMQTVNGIFIGQKKYVHDILERFQ
MKDCNPVSTPTEFGLKLNKDHGGKKVDSTLYKQIVGSLMYLTATRPDIMYSVSLISRYMENPTEMHLLTAKRILRYLQGT
KDFGLFYKKGEKMELVGFTDSDYAGDQDDRRSTSGFIFMFGTGAVSWSSKKQQIVTLSTTEAEFIAATACACQAIWIRRI
LEELQVQQIGATTVFCDNNSAIKLSKNPVLHGRSKHIDVRYYFLRDLSNDGMINLVYCRSEDQVADIQTKPLKLAAFMKL
RGLLGMCSRSAVIKNTEEG
>Copia40-PTR#LTR/Copia 87-4236 via tfasty with ATCopia21_2-4495, 1 frameshift and 2 stopcodons. [Populus trichocarpa]
MSDSSNTTLVTINVTAQAPVKLNITNYLSxRLQFHTLFIGYDLQGYIDGTKPCPxQYLTTNTDNPTTQTLNPEYHTWIRQ
NQLILNAIIGSITPTIIPFIARATTARATWNILAATYATPSRGRIKQVKANLKSLTKGNLSITDFLQSVKARADELAVLG
APVDNEDLTDKIVEKLGDDYKELVRAVQARDHSISFDELHEKLLMFEASLQAASKGVNFSPTTHLSSRNQSRYPFNNVGR
YTSNNSGGNWRPSTSQHHRYTGQVLTTHGTSNSSRSQPRPYLGYCQICGIQGHTAKKYPSFRLVPLHSNQNSSPTPWQPQ
ANLADTSSQTQSPWLLDSGASHHITADLQNLAHQLPYTGTDDVMIGDGKSLRITHLGSSTLHSSAHSFKLNNILCVPDIK
RNLLSIYQFCVDNNVSVEFLPWCFLVKDLLTGEIRVKGKTKESVYKWSCVVTPHAFSSLKTAPINWYLRLGHPAVSVLKT
ILSKHNLNSSSVSKDFVCNACHCNKSHKLPFSVSTLTSHKPLEIIFSDVWTSPILSVDGFKYYVFFVDHFTKYVWFYPLQ
KKSDVKTTFIRFKAVVENYFKTKIMTLYSDNGGGYIALKEFLVMHGISHLTSPPHTPEHNGFAERRHRHIVETGLSLLTH
ASLPRIFWSYAFATAVYLINRMSTTKLQNLSPYAVIFQHSPNYEKLHSFGCLCYPWLRPYTAHKLDPRSKPCIFLGYSLS
QSAYLCFEPESSKIIVSRHVSFIEHIFPYHDLHKQEPPCISTSVDMWIPPVITIPSSTSTHSSAAAPEARTPPLVILHPS
SGLANPSETPSLPSSTISISAPVILNPIATTPTPTAPLPCHPMTTQSKNNIHKPIQKLTYTTTLTTQPQEPTTLAQATED
PHWQSAMNEEYSALLRNGTWTLVPPVCASNLVGCRWIFRIKRNADGTVARYKARLVAKGFHQRPGLDYHDTFSPVMKPTT
VPLVLSIAVSNGWTLRQLDINNAFLQGTLVEDVYMAQPPGFHDLDKPEFVCKLRKAIYGLKQAPRAWYHELRNFLHASGF
SNSLADTSLFVFHQQSHLIYLLVYVDDIIVTGDNQHAVNQFIQRLAARFSLKDLGSLQYFLGVEIQSHPTGGKLLSQHRY
IMDLLHRTNMAHVKPTSTPLPPGCKLSLDMGAHLADPTHYRATIGSLQYLSLTRPDVCFAVNKLSQFMHKPTDVHWKLVK
RLLRYLLGTVNHCLLLHRHSPCSVYAFSNADWGGNMEDLSSTSAYVIYLGRNPISWSSKKQHTTTRSSTEAEYRAVADTA
AEISWVCSLLSELHFPVSHTLVIYCDNIGATQLSSNLVFHSRMKHVAIDFHFIRQRVQPGALRVSHVSSNDQLADALTKS
LPRLQFWLLKDKIGLIDPVHLEG
>RTE-4_DF_pol#LINE/RTE-BovB 228-3212  [Drosophila ficusphila]
KRRASDKIPPYVDDHRKTKKDYDLRICTWNVRTLNWEGASIQLADALEKLKADITAIQEMRWTGQGCSKRANCEIYYSCH
AERREFGCGFVVSRRLRHHVSNFTPVSERLATIRVKARFFNLSIICAHAPTEEKDDAVKDAFYARLEDTYDRCPDHDVKI
ILGDFNAKVGRERIFDPTVGQFSLHETTSNNGLRLIDFAAARNMVVSSTRFRHLDIHKATWLSPDQKTRNQIDHVVIDGR
HASSVMDVRTFRGVNIDSDHYLVAAKIRMRLCRAKNIRPITQRKLDVTRLRSQRTAMAYSTHLSELLHQPIPLPVDAGGL
WAHISHSMRAAAETTIGFKRPPTRNQWYDEECRVAAAAKNAAHRKTLQSGATRATCERYREKRKEERRLFRRKKREQEKR
ECEELEVLRDRNDVRKFYQQVNRLTQGFKTGASNCRDENGNLVTDTQCTLRLWREHFSKLLAGDDGTNPAIGGSSPIPPI
DDNVDIPLPSHDEVRVAITRLKNNKAAGADGLPAELFKAGGEELIRCMHQLLCKIWLEESMPNDWNLSVLCPVLKKGDPT
ICANYRGISLITISYKVLSSVICERLKPYTSTLIGPYQCGFRPGKSTIDQIFTLRQILEKTHENNIDTHHLFVDYKAAFD
SPTRERLYATMSEFGIPAKLIRLCRMTLSSTISSVKVGTNLSEPFNTVRGFRQGDPLSCDLFNFVMEGVLRKAGVHRSGT
IFYKSVQLLAYADDIDIIGRSKRDVTAAFSAIEKESAKVGLAVNEGKTKYMLSTSREARRLDSHVVADSYTFEVVKEFTY
LGTAINTENDVSLEIKRRITLANRCYFGLSKQMCNRDLSRRTKLTLYKTLILPVLLYGAEAWVISLTDAAALGVFERKIL
RKIFGPVRIGDDFRIRMNHELYELYDDVDVVRRITIQRLRWLGHVVRMDKESPAQKVFEARVDYGRRRRGRPKLRWKDQV
EENLTALGISDWRRRARSRGAWRETLRSAKTRIGL
>Penelope-6_XT_pol#LINE/Penelope 2-2311 [Xenopus (Silurana) tropicalis]
KGHRASNILQKAQKHLLNERVRQINFTIEALKQKIEQLKQSLTKQLPDVTLERVVQFIEHAQMAQHIKSKERQISKFTSL
LSRSSGLKRTEELTWRQKDETSKNTKDTWVKNLSDRVLTQPEKDVLAKGLNYAVTPQHIPVVELITATESAINNNHIKVE
EAEQLRLKVSAALSSARAPPSNLTTQERRALTSLSKDPNITILPADKGRCTVVLNTTDYHCKMTSLLSDSNTYEPLRRDP
SSSYKKKVIDCLQQLEKEEAIDRALYHRLYPREATPCLYGLPKIHKDGAPLRPIVSSINSVTYSIAKYLANILAPLVGKT
VHHIQNAKEFVTKIQGVKLEAEETMVSYDVTSLFTCIPTTEATETVRNRLQKDNTLSSRTKLSPNQVCLLLDLCLNTTYF
KYKDQFYRQKHGCAMGSPVSPIVANLYMEEVERKALLTFNGTTPSHWFRYVDDTWVKIRSNEVAAFSEHINSVDNNIKFT
REDVHENKLAFLDCLISIQEGGILKTEVYRKPTHTDQYLLFDSHHPLEHKLGVIRTLHHRAESVTTDTESKDKECKHLRG
ALKACGYPDWAFVKTRATKPNRNTKRNNRPEAERRRNIVIPYVAGVSEKLRRIFNKHHIPVFFKPSNTLRQKLVHPKDPT
PKEKQSNVVYAVQCSEECTDLYIGETKQLLSKRMAQHRRANTTGQDSAVFLHLKDKGHSFENSNVQILDKEDRWFERGVK
EAIHVKVEKPSLNRGGGLRHHLSATYNAVLTSVPRQFQNSSHIHSCNSNK
>Penelope-6_HM_pol#LINE/Penelope 203-2035  [Hydra magnipapillata]
KDIINNXKSHKTLTHADKTSNMYKLSKEDYNNLLTNAITTTYKKANPKLKDHINKEGKQILTNHEVYKKIEINGSSNCFF
TLKDHKENFANNPSVRLLNPSKNEVGRISKVILTKINCELKNKLFLNQWQSTQNVLDWFKKITNKHLYKFLVFDVNDFYP
SIKESTLNNAMNFADHHIVIKSEDKALIKHARKSLIFNNDEAWIKKRGGLFDVTMGAFDGAEVCELIGIFILYQISQHYN
KEDFGLYRDDGLAVFKNKNGQQMEKIKKHITLIFKKNDLQITIQSNLKIVNYLDVTLNLSNDTFQPYFKPDNQIRYIHSN
SNHPPSIIKAIPRNIEQRLSSMSINEKFFKKAIPPYEEALKKSGYKSNLTYQPQIISSQNQQKKQRKRNIIWYNPPFSLN
VKTKIGNRFLALIDLHFPAGHKLHKIFNRNSVKISYSCMPNLKSIINSHNFKILHNKNQLKTNQCNCVDKAFCPLNNQCL
SNNIVYQATVSSSHHDRNKKVYFGISNTPFKLRYANHLKSFASIKYRNDTELSKEIWSLKDQNIKPIIEWKIVKRCKPYN
LATKICHLCLYEKYVILSHNGKNLLNKKNEIVSQCRHSKKFLLSLFDTGD
>Penelope-8_NV_pol#LINE/Penelope 3-947 [Nematostella vectensis]
SHLYLPPTSCHPEHCKRAIPYSVALRLKRNCSDENFLCRRNNEYKNYLIEQGYKPELVSSKFNEVASLSRSELLKPKSNR
AKRKVTPLVMDFNPNLPDIGQIVRKNLSFLHSSTFMKEVFPEGSIISAFRRPKNLKDILAPSKFKQRVATEISNQENNSG
CFKCGKKCDLCSSYFVQSRHFISAATGKKYFIRQRVSCNSKNAIYLATCRKCNLQYVGSCTTEFKVRFRNHKSSMRTNKK
TCEVAKHFNRSEHNLSDFDFIVIETIARQDLIGLDSVLLNREAYWMMQLFTLAPHGLNKRREYKSKNRIHFNNT
>Penelope-13_XT_pol#LINE/Penelope 3-1694 [Xenopus (Silurana) tropicalis]
PKSAIFHHLPKIHKKERPPVGRPIIAGIGSLGENLCEFIDHFLQPLVLRLPSYLRDSGHLLYTLNNYQWNSTNLKWASID
VTSLYSCIPHDLGLQAIEYHLNQYSTYDSNFITFLLRSIHFLLTHNFFYFDKKYYLQCRGTAMGAKFAPSYANLFLGWWE
DLHIYNDNNQFSDHIQYYGRYIDDIIIIWSGTDEQFSDFIKHINTNDYNLQFTSEIHHASINFLDITLSTFNQSVTSTIF
RKDCSANTLLDATSCHPRHSILNIPYSQFLRIRRVCSEESEFMSKSTDLYYRLLDRGYPRKNIIKAFERAASVDRSSLFD
RYKTRDSKVSKHKKNVHKKDNESLTCILTYSPQQKMIEKIINNNLTILKTDPILRQILNNGHRFVTRKTETLSNLLSPSL
IHTNETTNTWLSTKGCFKCGTRQCITCNYIQKTNSFTSSITSKKYQIKHFINCNTRNVIYLLTCTKCMKQYVGQTGRKLK
DRIREHVLNITNANSHTTVAKHFHECSNRSPSFLQVIGIDRVIPNPRGGNISSILIRKETKWIFFLKTRQPYGLNFDYDV
TCYV
>Penelope-11_HM_pol#LINE/Penelope 598-2505  [Hydra magnipapillata]
MPQWAGKLNANYNKQLKEKINITRTNMQNKTITNISGTQLTKNELTILNKGLKFIYSPQEPDFDLYTKQIKKFKRHIYCK
MFFNKQHPTSQNPTKKDRTLKRPNPNWNPLADKNMKLKRYMTIIDRETERIMKDPTYTNANNTTINERKALYKLRRNKSI
TIKKTDKGGGICILDKKTYEEKILQLLEDKNTYDELPNDTTEMVTDKIINEIIMMRNARAIPEKVANFILPNTPSRTPLF
YGLPKIHKQGTPLRPIVSGCDGPTDNLSEYVVKYLQPMAETLPAYFRDTTHLLRLLSDINSPESPITLITADVTSLYTNI
PHNDGIQTIKNFITEHLHTIKFPPELPPIIPTRHFCHLIELILKNSSFMFGDRAFRQKFGTSMGTRMAPPYANIFMSTFD
KTIHNKFKNSILLYKRFIDDILIIFTGTTQQTEELTTYANTLHNDIKFTFNTSNDKINFMDITLQINKNNNTLTSKLYRK
PTDTLSLLNFHSNHPRHQKIGIIYSQALRLNRLISDEDELNKELKNLTITLVTKNYPLNVINHHISRALLKTQTELITQS
KPLKLQDNDDTTSNQIPIILPNDNIGRELAQMITKHWAIIKNDPDLNTILKPALLKVLSNHKSLNDLLISTRHKA
>Penelope-2_HM_pol#LINE/Penelope 3-1943  [Hydra magnipapillata]
TPQCPQQINDMRAFECDLFKLIKNIQFRIVPCSFQNKLKKDISTIRKSTYIYTRADKTSNLYKLSKDEYNKLLMNATTSN
YKKTNPIIKDRINKEGKTILKNHEVFNKININSSSNCFITLKDHKPNFLNNPTVRLINPAKNEVGRISKHILSDINTNLR
NILQLNQWNSTQNVINWFKNINDKHFYKFLIFDIVDFYPSINEKLLIDSIKFAEQYVSIDADHKSLILHARKSLLFTNDQ
VWIKKSSGLFDVTMGAFDGAEVCELVGIFLLFQISQFYNKTDFGLYRDDGLAVFKNASGPKMEKIKKHFTQIFKQNNLSI
SIQSNMKIVNYLDVTFNLNNNTFQPYHKPDSTLNYIHANSNHPPSILKQLPISIEHRLSSNSSSEKIFQKTAPIYNDALE
KSGFHTILQYHSNLNSSITNKRKRNIIWFNPPYSKNVITKIGHLFLNLIDLHFPLHHKLHKIFNRNTIKISYSCMPNIRS
IINSHNQQILRNKLTDNDINCNCINKTTCPLNNQCLSKNVVYKATLESPNTSLTEKSYIGISENTFKLRFANHLKSFNAT
RYRNDTELSKEIWKLKDAGNMPIIKWNIIKRCQSXNPSTKKCNLCINEKYFIMTFDSRLLLNKKSELVSACRHRKKFLLS
NFDSGD
>Penelope4_XT_gag#LINE/Penelope 1-500 Matches Neptune1_Ac_gag [Xenopus (silurana) tropicalis]
NVDFCKRWCQILNKCSMDLILLVIEEVSKNLKIVHTEISAFETAYLQTLSNDTEHKWLDKLQNQLSQYTSDLHKFKKQKV
TTVTADYQNRRVYRWLTGGETQTWGRRAHFTHNPQFDRIDSSPYTTTSSDSDTPDRARSHRRRRQPRSSAQAPPRVPAVS
SQSHFL
>PENELA_Smed_pol#LINE/Penelope 2-1806 via tfasty with Perere_Smed_pol, 1 frameshift and 1 stopcodon. (5' truncated consensus)  [Schmidtea mediterranea]
YFGYLTNSSYSKFINIDKVKYGLQSSAVEYLKKNKLQNISDFAVLKNLSKKAVKVCNFDHEVDYFDKLYKVLEGPQFVKM
DNLRKNFKYPPQKDEEILNKLVFRLMKDKHLDCDLGKQLYAVGSQPAKLYGLPKTHKKDVPMRPVLSMIGSAQYKVAKVL
DSLLKPLISKEYECRDSFEFVDFITNQAVDSSDYMVSFDVTSLFTNVPLNETIDLCCDLWREKMLDYQTLDEVAFRELLR
FATSNVAFLFNDKWYQQVDGVAMGSPLAPTLASIFLSKLEKQISEFPFVKPKIYKRYVDDIFLVFSSSDDVVPFFKIIxM
GFILNIKFTVEEEVNSFLPFLDLLVEKTAKGFETEIYRKPTDTGLYNTLNSFCDFKYNRNMIKGLIFRSWSLSSTFEKSN
KSIQKLVSLLNKNGYSKAFVERLTKETIDRLMIAPDENNGNHSPPNDGEPIKSHVFVIPYSEGFRNFKLSVTKSLDNSNL
FKIVSKSLKSINMFSNKSQTPIGLVSDLVYKFSCNGCNATYIGETSRHLRTRVQEHSRLRGVSNIIEHRKMCKGTTDLKD
FKILYKNFNNKWERILCEALVIKSQSPKINVQSATNLLRLFN
>Penelope-1_AFC_pol#LINE/Penelope 1-743 via tfasty with Bridge1_TN_pol, 1 frameshift. Fragment. [Cichlidae]
HTHVKEALKTCGYPEWAFIKSAKRHRKEDQTPAREDKKDRRNNIVIPYVAGVSEKLRRVFSKHDIPVYFRPSNTLRQKLV
HPKDKTPKHKLNNVVYAVQCSEECPDLYIGETKQPLHKRMAQHRRATSTGQDSAVHLHLKDKGHSFEDANVHILDREDRW
FERGVKEAIYVHCERPSLNRGGGLRHQLSAIYNPVLRSLPRRLNAHSHPGPSDLRKSHDRVGPGFTMSSPETLADWDPHP
VSHLGSCD
>Penelope-2_Crp_pol#LINE/Penelope 3-1820 via tfasty with Penelope_Pci, 6 frameshifts. [Crocodylidae]
RAMLSLKNNPDIIIQQADEGGVPLLSWTKQHAYRKLRDNFPTQFYKLLTEDPMAQYQKELDKLLQELPLETQERITASTS
WEPRPGNFYLLPKIHKPGNPGRPIVSGTGTITEGVSGYVDSILFPYATGAASYLKDTTDFLKKLGSIDKLPANTILATMD
VTSLYTNIPHEDGLQAIKNIIPGEKTAFVSITLSHFVLTHNYFRFGDSLYLQTNGTAMGTCIAPQYANIFMTDLEVHFLR
SCPLIPLVYLRYINDIFIIWTHGKESLEKFHQDFNNFHPSIKLTLEYSTQQIHFLGTTVKVCSGHIATTLYRKPTDRHSY
LHATSFHPKHTTRSIVYSQALHYNQICSDPTDWDEHLKDLEQGFLQLQYNPKTVATQINKARLRPYLHLLQYQPWDKDNR
IPLVVTYSPQLEHLRHIINDLQPLLEKDDHLKIVLGDKPVLAYRQPPNLKWHLSSNRLPNSHPHQGTRPCNGPKCLLCPH
INTDHIITGPNNKDYNIQGSFTCNSTNVIYVITCLQCPSAVYIGQRGSLCVRMNEHQSDISCRKTQKPVAEHFNLPGHSI
ADLRIAVLRQKIFKTSLNREIAARIIHKLDCVKYGLNRDYRFFSHYLD
>Penelope-1_HM_pol#LINE/Penelope 7-1217 via tfasty with Penelope-1_NV_pol, 2 frameshifts and 2 stopcodons  [Hydra magnipapillata]
KNSGLFDVTMGAFDGAEVCELVGIFLLFQLSQHLxQDNFGLYRDDGLAVFKNASGHLMDTIKKHIIQIFKNNNLSISIQC
NMKVVNFLDVTLNLNDQSFRPFCKPNNELNYIHVDSNHPPSIIKQLPRSIELRLSANSSNETSFRNSAHLYQDALKKSGY
KFKLNYIPKLIQPLPKNRKRNIIWFNPPYSKNVSTKIGKIFLDLIDKHFPVGHKYHKIFNRNTLKVSYSCMPNVESIVNS
HNRHIMKSIPPESDKSCNCINKSKCPLNQQCLVNNIVYQATLYPGTPDGIEKVYFGVSETAFKLRYANHTKSFNIEKYKN
DTELSKEVWKLKENGVLNPTIKWKILKRCRSYNPTIKRCNLCLYEKYFIISYTYDNLLNKRNELVSKCRHKSKFLLSNFD
TGD
>Poseidon-2_HM_pol#LINE/Penelope 12-1792 via tfasty with Poseidon_Hyd, 1 frameshift and 1 stopcodon.  [Hydra magnipapillata]
KLKKNIDIYPFDKGTGFVRIEHDKAIEKIREQIGPTKISEDPTLVMQLKLRYLSKLNKKHRFSKDEYESIYPSDPIPPRM
YGLIKAHKPEKSYPMRVVVSTIGTPSYGISNYLVKIIQPVLNENPTRLKNSKEFINKTKSWxIDKDEIQVSFDIVNLYPS
IPLKEATLILLDQLNKSVSYKNSTKLTLTETKQLIELCLFRCYFLWNDEIHELENSGPIGLSFMVVLAESFLQYHEEKAI
KMAMTIIPLIDIKSFHRYVDDSHARFSNLNQAEQFQTILNKQHPSIKYTIEVENENKILNFLDITVINNTKGKYEFKVYR
KDAITNIQIKPHSNHDPKILKAIFKGYIHRAYSICSENHLKDEINFLIQVFTENGYNEKINCSFINIYTHIYIYKKDISD
QVRKKRFANKNEIPSNSNNLPTISLPWIPIISPKLRKIFRKAGYRTVFKSNANLKTLLTSKNKSKLPSNSHPGTYLIKCK
CSKVYVGETKLQIRTRIQQHQKFLTEGKLNQSALALHKINCNEDIKWDKVKTLKVEDKKFERKVREALEIQKHQCSPTYG
GMNLDNGQYVKTNFWTSFFSYLGKRSHYKGDVKI
>MinoAg1_gag#LINE/R1 590-1957 gi|28569866|dbj|BAC57907.1| gag-like protein [Anopheles gambiae]
MPSALRSGGLPAHRLSSSLELKQKKSATGTNLPSSPEMLILRQNLEETRKKNESLQEQLTQLRWLMEEKLREQREDAQRR
EEEARRREEAAKADNEKLRVEQQETHTTLIAISAQLRDLQQKNQMKRQQQHQPPQQPGPSTSAVSLRNVEVQAQPEEDID
HSSFVEVVRRKPRGINSGKSSSQQREQQQRSLQQQQQQQQQQQQQQQEQQQQQQQQRKIRRPKADLIEVVPQEGLTWDSV
YRKVRDTVRDDPAHKNLEEHIGMGKRTRADLLRIELSRSADSTLVLQEVQEIIGGSGVARVVTEMTELLVTHIDPLAEEQ
ELKAALKEELQVNAGVTAVSMWQLFDGMKRARLCLPTKAAKQLAGRKLRLCGCISSIMEAMPVSVDRQRCYRCLERGHLA
RDCQSPVDRQQACIRCGADGHYAKSCTSEIKCAACNGPHRIGHISCARPAARCLH
>LINER1_pol#LINE/R1 1593-4612 via tfasty with DMRT1B_1859-4843, 1 frameshift.  [Nasonia vitripennis]
MKIVQLNINHCATAQDLLSQYVRETGIDIAIVCEQYRDLDKPSWDMDSTGKAAIWACGDAAFQEKMTRRNEGFVRAKVAG
VHIYSCYASPNTSIEQFRQLLDQIVQDAVGRKPVLIAGDFNAWAVEWGSQRTNERGRALLEAFALLDLVLVNQGCSYTFQ
RGDAGSIIDLTFVSSCLIGSVRSWMVSDHYTNSDHQAIIIEIRISKQRSNGRATTKRVGWKTKDYDKETFLLALEEIQLS
GSANDKVEQVMGNITRACDATMPRRAPNNRRPPVYWWDKEIDAARKECHRTRRREQRARKKYYKTGRGKEIVDALNKEMK
DAKRILKKKIRENKRRCLKELQDEVELDPWGRPYQVVMKKIKGGYIPPPKSPELLDRIVTTLFPLQLEVTAIPEAEANDE
TIPTITTEELLAACKRIGNNKAPGLDGIPNIALKQAIQARPDVFVDLYNSCLEEGTFPKNWKKQRLVLLPKGDKPPGEAA
SYRPLCMLDTPGKILERIIGVRMDQVIEKPGGLAEYQYGFRKKRSTLDAVSLVVDTARTAIEGKRWKGGSKKYCAIITLD
VKNAFNSASWGKIHEALRKKEVPDIYIRRIMSDYLKDRTLLYDTESGTKTYQVTGGVPQGSVLGPLLWNIMYDGVLRLEL
PEGATVVGFADDIAVVVVAKQKEEVTEIANEAVSIIHDWLKQTGLELASHKTEAILISSRKKIETITLSVDGHEIDSQPT
IKYLGITMDARLTFKQHLERVSNKAAKVGAALSRLMPNVGGPTQGRRLLLASVTTSIMLYGAPIWADAMLVKSYARKLST
VYRRSALRVASAYRTVSEDAVCVISSMPPIDLLATERKNIYEENRRVDNTQKEVWKSAKEQTLAEWQRRWDSSGKGRWTH
RLIPRIVGWTNRRHGEVNYYLTQFLSGHGCFRAYLHRFKIEDNPNCPVCLEANEDAEHVFCNCSRYEMEREELERYLQTR
VTPESMMTAMLASKDGWCAVNNYVRTIIKKVRNDEENRREGQGETAE
>R1-1_DEr_pol#LINE/R1 814-2541  [Drosophila erecta]
MRTRVKNVGRYKTTPGGNQLVGNPPVENSTAGARILEAPNPILNQPGEVVASLAASTAKATSQQEKGMDNAGAFLGGGKI
LRSPTSTAKATSQQEKGMDNAGAFLSSRKILRSPILPRAPAPLQAGGSNLAEGVDVQDTPKRARTPNSPSGSSRKTPPKR
TKADRQLLCAGKLTEIGLVLDQLMILTNVKQVRHINVQMKAMFAKMKALQEDASRELETEYEPGNAPTNALPGCPKCGGR
KAKAVDKLQQTNPSPKRDSFAQTDAPYPSKIPKQHSRSPGAAQVPQRVKPREKRASPPKRQAKTAEKATAQQAETQSRGK
PDAWXKVEARKKARLTRRPDAVIVEAKGKTYSEVLALVTRRSDGQLQELEKSVHKVRCTASGSLLLELSRDGDRKATLMK
SGLEAVLDGVATVRALSKDSRMQFLSVSDLDPLVAAEDLSKALADQFNIDPSSIKLRSLRPSFRDTQTATIGLPCREAQA
VLAKGKLKVGWTVCRVKESEARPRCFKCLEFGHIAVRCKSPANRSDCCLKCGQTGHKIASCTQEAKCFLCTSARKADAKH
IAGSRRCPMSTKPLRK
>R1-3_DYa_pol#LINE/R1 2402-5383  [Drosophila yakuba]
MKIVQINLNHCEAAHHLLSQTMREVQADVALISEPYRKTPGSDYILDGTGSAAILINGTSRPRNLRIGSFFVRGLVGDLC
LYSCYLPPRLSLPEFSAVIDELANDARGERNVVIAGDFNAWAEEWGSVHTNARGRTLQEAFASMDVALLNTGTEHTFSRA
GAGSVVDLTYCSGSLFQRAQWSISDAYTASDHKAIICDITSRGSFTAPSAKRHFNPKTLQRDAFLREFGSPDIGENAAAS
AISLTRAVERACIASMRVSRSHHRHREPVYWWTDEIAEARRTCLRARRRQQREHGHPNNETLRQEYADNRRALKRLIKQS
KRRCFLELCDSAEQDPWGSAYKIVVKKLSQAKPLKTGDAATMTAIVEHLFPIVPSDPQPPHAAPGDLSQIALRPXEIREV
AKDMPSGKAPGPDGIPDIAVKLGMXEHPEAFAAVFNQCLTEGFFPERWKRQKLVLLPKPNKPPEDPSSYRPICLIDHMGK
AFERCISLRLHEAISAAGDLSEMQFGFRKARSTVDAIATVKEIASKAIEGTRWHGGSKEYCLVVTLDIRNAFNTARWGVT
IRALQHLGVPDALVGIVKAYFSDRVLLYDTDGGTLEHRVTCGVPQGSVLGPLLWNAMYDGVLRLSLPGRTKVIGFADDIA
VVIVAKTVKEAESLANAAIGIIVEWLLAVGLDIAHHKTEAVLISSRKQVETATIRVGDTTVTSARAIRYLGVLLDTRLTF
KEHLAEANRKASSVARALARIMLNCRGPRQGRRLLLQSVCRATALYAAPIWAEASEKRSYIRGLESTHRLCALRVCSGFR
TISDDAAQVIAGTLPIDLLALEAKEIHHEVKKIVGQCSSAQKRAIKANARTNSLERWQRRWQQSTKGRWTFRIIPDVVAW
TRRRHGEVNFWLTQMLSGHGCFRSYLARFGHDDDSHCPECGVDETAEHIIFNCQRFDRDREGFMEDVTDPSTLGERMISD
QTFWGQISNFAAVAMKRLRVAERERAARRQQDPS
>R1-2_DYa_pol#LINE/R1 396-3356  [Drosophila yakuba]
MKILQANMHRSRTANDLLHQIVIENQIDVVIISEQYKRREEGVWLEDNTKTAAIWIPDPTTVPHRNDKRGRCHVLTQIRN
WTIASCYLTPSDDIQTFQTKLEGIEDNARQIRGDLIIAGDFNSRAIEWGMPSTDSRGRRVLNMAARIGILTANVGATATF
NRLGNEGTIPDITLVSENGAHKITDWKVLDTYNGSDHNYITFNIAENAVTTVAPKRKGWNVKRLDKARLILEIDARQNRQ
SGGDIVNQNMATIKQACNAAMPKMGNPRRQGQEVYWWTDEIKTLRETCIKNRRRLTRARRRGQFTEQESQFKKSKKDLTT
AIRKSKTEKWKSLCNDVNTDPWGMGYKIVMKKLRARRTTPDLEEGQMDHIVKALFPDHTYSFSRSTTPIADEQVELFTVD
ELQRAAKTLKRRKAPGPDNIPAEVLTVIAENRPQILLDMYNECITSGKFPDTWKLQRLVLISKGKGDPLTPSAYRPLCML
NTTGKLLEKMIKPRLSAAIERGGGLSPRQHGFRPGRSTIGAIQEVVSQALSSQQGNHFSRPVVLLATLDVKNAFNSVQWG
NIIDALKRRFQISGYLMRIIQNYLDNRRLLYQTIAGEKCIDITSGAAQGSILGPELWNISYDEIFHLEMPDDTFLVGYAD
DIVAVITARNTEYAQRKLTQVMTRVKRWLNSHDLKLADEKTELLLVTRKRIPLEIDMRVGENVIRTRKDIKYLGVRLDSK
LTFSSHIQETRKRATVTTKSLSRLMANVGGPLQSRRKLLMEVSNAIMLYGCEVWAGTLETACRSKPLLEVQRTMALRIAS
AYRTVSGPAASVIGGAIPIDLIAKERKRIYEIRQAGETTRALIARSRDETLQQWQEIWAAEEKGRWTARLIPNLVAWTAR
AHGEVNYYITQMLTGHGYFGAFLHSIGKRNDARCVYGDAEMDNVEHTIFQCGKFGSARRCLEELVGAITPENIVTKMIDS
ESAWXHIAGFVETILRAKKPDLNETTG
>LINER1-3_NVi_gag#LINE/R1 485-1870 [Nasonia vitripennis]
MCWGHVSCPHRRGDPGGRTHAGMKKNAYNMGTTNELGENSQENLEVETLRVPTTQDGGYPIHKSSSSTSIGSAMSAAGYR
YESGTVGEESQTTREWLQAHASLRDKIREVRDMTREMTKTLDKQKGVNSKIKDGLPLIGSMLIEAVTLLDKMEDVVKRQP
LQQPRADNAKSQKTAKSKKRVRASSDGGGGTPAKKDKKDVSAPSTSRDSEGNGQTSHGQTQWEVAAGRKAKKKQKDKPEQ
TQPKKREEKVPRQRTDAILIKPESGKTYADILGQMKAHVKPEELNTEVKFVRKTRQGGVLVGVGKSNDKMKSLQKAIQDA
IGQVGTIENKISKITLEIRDIDGLTTKEEVNSAIAAVTDCGEEDVKIHLFEPNTREQRMAVELDQTKAAALLKKGKIRIG
WVNCRVRVRASVTRCYRCLGCGLXMHRXXXXBVFFAKTPRRLRTGRCTLQAPERAQSSGRX
>Poseidon_Ap_pol#LINE/Penelope 1-1767 [Acropora palmata]
TRQRELPESNKVDIRSRIASTIQSASLTDCNLTKDELHALRRLRNDKDIVILPSYKGCATVGMNKKDYSHKMDSLVNDKQ
TYEPVKRNPTPALQRRVSGKLLDFKKKETMDIQLYYRLRCRVPQSTKLYRLPKLHKPNIPMRPIVSFCGSPTYQLSKHLI
FLKPLTDKSRHKLQSTDNFIDAIKTVQIPDDHKLVSFDVKSLFTSIPLQLALDRTKTAIKKSHYQPPLPTDDLMDLLHLC
LTSTYFQYNGKHYKQLHGTAMGSPVAVVVAEIVMQNIEEQALATYSETLPLWLRYVDDTITAVHESKIDEFHEHLNEQNT
SIQFTKEIEENGKIPFLDCLVTRENNTLRTTVYRKPTHTDRLLDQTSYNPTSHKATTVRTLTRRAQIVCDSDDSLTDEIK
HLNTVFIKNNYNTDFIERNTYIRPNDSSNNSYTTTATIPYVRGTSETIARILRPYNIRVAHKPIFTLRRLLTHVKGKDKP
EDRPGAVYKIHCSDCQATYIGETGRNLTTRLTEHKRATKKGDLNNNIAEHHLKTNHAIDWDSATCLT
>Poseidon-4_HM_pol#LINE/Penelope 3-1817  [Hydra magnipapillata]
ILTSSLKRKLPDNLTRQQRFALNNLKKNKDALRFYPFDKGSGFVVINESDAFKKLDDEIKKSVIINYDPTQTITTKFQKF
LRKLRKENKFDKKTYFQLYPSDCIPPRLYGVIKAHKSDKNYPMRPVVSTIGTPPYGSSEYLVKIIQPTLNKNKTRLXNSS
SFVNEAKSWVIYPNEIQVSFDVIALYPSIPIDKAIPVIIDILNNDKDDLENRTKLTLTDVHQLIELCLSQCYFLYKNEIR
TIPNSGPIGLSLMVVVAEAFLQHLETKTLRVAEINLFSPKSFKRYVDDGHARFDSLEKHDKFLELLNQQDPAIQYTSEIE
NERKELNFLDITIINTNNFHYDFKIHRKPAITNIQIKPNSNINPAITSGVFKGFISRASKICSPKYLQDEIQFIINMFVE
NGHKKSELELITKNYLKIKNNPVGVVADQTKNGNITIKLPWIPRIGSKLRKELKRYGAKVIFTTPPTLKRILCNNKSKLL
PNSKPGVYKLTCSCGGVYIGETKKKIIQRSIEHQINSMKGNWHASGATEHCKNCHGIFNWMHPKTIAFKSNYHERKIRES
LEINYAQTNYEIRHFPPLLNKDNGVKIASNSWRPLFKKIIEISK
>Sm1_orf1#LINE/Penelope 373-3192 [Selaginella moellendorffii]
MPATPPPPLPSAALVPIPDSHDVMDPSPLMPPGPAAPGSSNHAMATAETGYAPVPPAPVLQFELGTTSRATSSREHSQLL
AEAIYDERASHRPLSPYLKRVLDTRRALRLRTTHVITAHIETRLENLEQDDTLSSVANFFCNEALRSALQRPPTSSDTAT
PQNSSDSVARSPDMSRLQQSMRHGPHSAAQERCMANTAASPAVNCDSPTSEQEVSQAEGTEHVVHVEHATEHVAHVEHAA
VQPMRRFPMPDLPRALRAPRHQRDLRSFYVENFPHRYVRSQFQDAFESLLRDRGAYPHGVLPANPGPLTAEPSATAMRRI
FPPPVVPNPVSSPPRPAPAMAAEQRPPSERGLPGPGPLRQPLRQPPSPATHGSVSRPVQPRPTTSHRQEQPVSTPPRPTP
SPRTRRTPPHTSMPERPSTPRSPEAGPPPLTPRASPAQRAPSTRTTRTQASPRAASQELRRPPPAPVDPPVAPPPRDHPA
AQGTRTDAEAIPPQPERCSGQPAPGRTPEPPAAPPPPLATGAEDGYTLGGFKNIDGAFNSILASSLREFLQEYNTLVSSR
SALQGLKDLKEQKKRPQSLRTRPPKLKVSRHAQDGLTSRIAEAHERYLTELHDILIKAREDEIETLQRLVSSGLRDLFRS
RLEDLVTSTLSYCSATEHDAVYHHLLALKQRCTLKFHTETSFFMAGKGIEHRAQTTATRRLEEAIDAANASADALPKEQT
MAELVNAAVTKALQSQRHATPSNAGKKKRKREKKNKAREQRDGTPGKHAQESSKRHRVSFAANADEAGSRSATPARNDQG
NGQRRNGATGTPPTRSAASASSSRGTPRRTSPARPGSREKNAGRDGPHRSGRSSSPQGRPRSTTPAPVTSGPQRPRGRSP
TRGSKGARTRSPRPRPGRSQTPAS
>DMRT1B_gag#LINE/R1 385-1896 [Drosophila fruit fly genus]
AILQLMDSAVGGSPPDRNDPFRRSPRLSRSPTRGVGNPTHGDGISVPSVARGEHAGPQPPLTSDCSDAVEVENLAPTAST
TATSQKTMDHIAVPSQKTGGKSPAGSPHRSSDLTAALQNEDLRGILTRMNGKISTLLSAFETQRHVTRETKGIASELSAL
NNRALELYKGTTSEHRLKSSATQTEVQKPTKKAPQNAQVPKVQVPKVQAPKPSNPTLGGNGEEKATSIPNESKPGSYASV
AKNASTGAEWTKVKPTRLRKKPEALIVKKTGEASYAEMLRKLRSDPSLSELGSHVRKIRRTQKGELLLEVEGKASESVPK
FKSDLEAALNDLASVRTGAQRIALSCSGLDEATTAEELHSCLVAQFQGLQINPEDIRGLRRMRDGTQIASVLLNANVAIP
VLKQGTITVGWSRCRITQDVRPTRCYRCLGYGHRSATCKNTDRADCCLRCGERGHKAKGCAAAPKCLICSSEVDRNHSTG
SFACPTYRATLKEAKSHLNAHSY
>Proto2-7_CS1_pol#LINE/Proto2 1382-4144 [Capitella sp. 1]
MPIEKMLAEECDVLCLQETWLTKQDLGGLSDLHPGYVGVGEATTDLNSGLLRGRVGGCVAIMWRSCHGHLISEVRLGVDW
AIGIEYRSADHHFYIINIYAPYECRDNEPLYLERMAYLSAFIDNLDSTCIYLIGDFNANVLNANSSFAKHLNDFCSDNGY
IFSSKMLLPRDTYTYISEAWHTESWLDHVLSTADAHNSIENMSIVYTLSSCDHIPLCLTLKVAALPVLTSLPNSLVNSRI
DWTSMSDDAIRQYCRDTGMGLTQVYIPHDALLCNNAMCNEESHQKDLQDLYAAIVSCIKSASSSLLTRGTRSCRPGWNMH
VNELHGLARDAYVEWKQSGSSRQGHLFELMKATRARFKYALRFIKRNESAMRADSLAMKLTCNNDREFWKEVKMMNNSRT
PLPNNIDGYTGSTEVCELWRQHYSSLFNCIHDNGVYLSPDVMFDNDMIIRPNEVQRAVAKLVDNKSCGLDGITAEHLKYA
DVSIVPLLAMCFTGFFVHGFLPEDMLSVVIVPVIKDKAGKINSRDNYRPIALASIMSKLIERILLERAEDTFMTVDNQFG
FKPKHGTDMCIYALKEVLHTYNALNSTVFLSFLDASKAFDRVSHGKLFRKLEQRGVSSYIIRLLVFWYSQQTMVIRWGDT
MSTSFHVSNGVRQGGILSPFLFNVYIDGLSINLNECPTGCYAGSLKINHLMYADDLVVLSPYSAGLQQLLNICTEYGAEF
DIKYNAVKSNVMIVQCKGNTQTVFPDFYLCNEIMNVCHDTKYLGHIICDDLSDDADINRQRRKLYVQGNTLARKFFMCTP
DVKVQLFRTYCSSMYTSYLWCHYKVASIRKLYIAYNDALRILLRVPRYLSATQMFVEVNVPGPLPALRNIMYRFICRLNK
SSNSIISALVNTTLSAVSLNSKIWRFWNKCLSFSSNMILY
>Rex2_Xm_pol#LINE/L2 Translation of AAY298859 28499-29795 via tfasty with CR1-3_DR_pol, 3 frameshifts and 1 stopcodon. [Xiphophorus maculatus]
SGKKKSPWRNAQTVRSARQLCRRAERKWRKTQLHVHCDIYKERLRNYHLTLKHAREPFFADVINKNINNAPALFATVDRI
TNPPVTLPPEFLMYCNQFSSFFSEKIQKIRGLICTSTIKSVPMLSPNKTNTGKMTQFQLLNYKTLQGIISQLSSSSCCLD
VLSSHFFKKVLPVIAADLIQIVNSSLSSGVFPQALKTAVIKPLIKKNNLDKSLLQNYRPPFISKLIEKAVCFLTINNLFD
SFQSGFHGYHSTETALVKVFNDIHKNTECGRTTVLVLLDLSAAFDTVDDILLNRLESWVGLSGPLLNWFESYIKNRDFFV
SIENFxSKRSKVTCGVPQGSILGPLLFNIYMLPLAQVITGNNISYHNYADDTQLYITMSPGDFDPIQSLNRCLEQINVWM
SQNFLQLNRNKTEFIIFGPKEERSRSVVLNLL
>LINE2_WA1_pol#LINE/L2 3-663 [Walterinnesia aegyptia]
DLSAAFXTIDHGILLRRLEGLGVGGTVLQWFSSYLSGRSQSVLTGGQRSSPRLLPCGVPQGSVLSPLLFNIYMKPLGEII
RGFGVRYHQYADDTQLYISTPGHISDALSVMSRCLNAVQIWMEGNMLRLNPAKTEWLCIPASXSDAEVPSLVMGEEVLPP
VDRARNLGVLLDSRLKLEEQVGAVARGAFAQIRLVRQLRPYLDRDALRTITQALVISRLD
>UnaL2_pol#LINE/L2 Previously 55771211_Aja_pol and corresponding to gi|55771211|dbj|BAD72127.1| reverse transcriptase [Anguilla japonica]
MFINPIPLCALPRPKWSIHRRRNLSNMIYPPLSTPQEFTVTGGLWNCQSAVKKADFITAFAKTKSLDFLALTETWITPDN
TATPAALSAGYSFSHTPRASGRGGGTGLLISLAWKFCVLPSPNPTSSSFESHAITVTHPSKFHIIVLYRPPGPLGSFLDE
LDTLLSSLPEDGTPAILLGDFNLSPETSQLSRVASLLQSFGLSLSSSPPTHKAGNQLDLVFTRSCSIPQLTVTPLHVSDH
FFLSFPLSYLHPLNSSNSSPTVTFRRNLSTLSQSSLISTALSTLPPPASFSNLPVDLATSTFNSCLSQSLDSLCPLVSKP
ARSSPPCPWLTESLRSSRTSLRAAERKWRKSRSSDDLTAYHTLLAAFTSALTSAKASFFQSKISACVSNPRKLFSTFSSL
LTPPPPPPPSSLSADDFLAAFEGKVATIRNSFAHPVSPPPPRDRPTATLTSFEMLEDSDVLQLITSHRATTCPLDPIPSK
VLQSISSEFLPYLSSIVNSSLSSGHVPSDFKMARVTPLLKKPTSDPSDVTNYRPVSLLPFLSKTLERAVLKQLTSFLHQN
NLLDPHQSGFRSGHSTETALLGVTEALATARASRLSSVLILLDLSAAFDTVNHKILLSTLAGMGIAGTALSWFASYLADR
TYQVTWKGSASASHPLVTGVPQGSVLGPLLFSLYTRSLGSVINSHGFSYHCYADDTQLFFSFPPSVTQVNDKISSCLADI
STWMASHHLKLNLNKTELLFFPCKTSLLRELSITVDGTTVTASHSAKSLGVVLDDQLDLKEHIKATSRSCRFLLYNIRRI
RPYLTTHSTQLLVQATVTSRLDYCNSLLASLPACAIQPLQMIQNAAARLIYNLPKFSHVTPLLRSLHWLPVAARIRFKTL
TLAYTAANRTAPIYLQDMIRFYVPARPLRSAEAGRLVTPPTRPKGSQSFSTLAPQWWNELPVPLRTSPSLPIFRRGLKTH
LFRLYLD
>CR1-43_HM_gag#LINE/L2-Hydra 121-1391 Distant similarity to WORF_DMi_gag and CR1-1_DWil_gag at C-term  [Hydra magnipapillata]
MAPREIGELFLTIQSSNNILENYIINVEEICSHPRDVIIYGFSQFKEAEVFKLRVELFQEILERFDIEQFSLLNIILDAE
DPVKKNLRKRYKILTCLDDIYLMSISLAENQLHKDFIKLISNSKQASQQMYQPPDINMALILKEVIDRLKALQLENKKIM
ADLHLLQVKYDELQKTNNEIVKNQCASQFNNTSNCEPHKSQENIKSIVSNSIKYHSPNQRNTLEEVTAHSSTEISSLYTD
RKNKIRDSYATVVKMQNPEQNNRKPEKEKDCVTDYQEFKVVGKNNKVNKSHMDKQKKEPVFGNKVASNRSSIAGKRIIRE
SYIFVGGVCNSISEEDLSNYMNKEIGITPLDIKLNRENMYNRSFKVKINSTEKGMVLKPDVWDNNIIVKPFRMRREALTI
EKPHQNTENHLPQFLHHSSAFMQQ
>CR1-12_HM_gag#LINE/L2-Hydra Fragment.  [Hydra magnipapillata]
RSIMKPIFGKKVAFNRNSIAGERTVRESYIFVGGVCNSMSEEDLSNHIKNEIGIEPIKVELNRENKYNRSFKVIIKSTEK
DIILNPDIWDTNIIVKPFRLHRVTSRNETPQQSAVNTLHSVQPTQQIFSTSKEQPSFAQQHSYSTRILNSNSKWKET
>L2B-4B_AAe_pol#LINE/L2 1724-4534  [Aedes aegypti]
QPSSSSNVNQFDILYLNIAGLSTNYVELRQIVEEKRPYLVFLSETHIVDIDAFDQYSIPGYNVAACLSHSRHTGGVAIYV
KESVQYRLQLNEVCEGNWFLGIAVDRGMKMGNYGVLYHSPSSSDQRFIEILENWLEMFVDCSKLNVLAGDFNINWCDNSN
SNHLKRLADFFNLKQKVNVYTRISRHSQTLIDHVYTNLDSVSVIKNSDLKVTDHETLVINIDDNSRNKSDFVKLKCWKKY
SKHAVSSLVERNVDFHTNDGSLDQKSAVLTDVLKTCTNKLVEHKFVSLKNSNSWYNLDLLRCKRNRDKLYKKWRRNNNNT
NWNRYKVARNKYSQMVKQTRCEYIQRKIDQHQNNSKELWKILKSLLKPSNCKPRSITFNGTLEESEQVIACKFNEYFVDS
VSSINQSIELVDEPDEIKQPINNNCTFECFHPITLEDLRNICFSMGKTAGVDNVNARVIQDCFDVIGHNLLDLINESLQT
GHVPQVWKESLVIPIQKVAGTIKAEEFRPINMLHTLEKILELVVKGQLLAYLNSNNLLIPEQSGYREGHSCETALNLVLA
KWKENVERKDTIVAVFLDLKRAFETISRPLLLRTIKRFGFSGSAYRWFESYLTDRTQRTAFNDSVSSPVVNSLGVPQGSV
LGPVLFIMYINDMRRVLRFCDINLFADDTVIFIAAKNLDDAVAHMNADLRSLSRWLKYKQLKLNISKTKFMLISRNRTNI
DVSIQIDDETIDRVREIKYLGVIIDDRLKFDAHIDNVIKKIAKKYGILCRLKNDLTIASKIHLYKSIISPHLEFCASILF
LANETQISRMQRLQNKIMRLILRCNRFTSSSFLLDALQWLSVKQRIVFLTMVFIFKVINGLLPRYLCDRIERGSDVHRYN
TRNATELRTPQFLYGASQNSLFFKGINVFNSMPIHIKRAATLSQFKRLCISHVKAAF
>L2-3b_Cis_gag#LINE/L2 57-905 [Ciona savignyi]
IDLNKKMHKNTGAKLGKEKTGKPNELSFFAELXEKLDNLTADLKLGQQSSEAKFLTVINELQEIKAGQNFLTARLEEIKI
EISEHDKHLKKLKNENGILKERIKELENKSVENSNTIDALEQYGRRECLEFHGISSHADESTDDLVVATVRKLGLPINKN
DISVSHRLAKPSHDRPRPPIIAKFLSRKIRDNIYGSRSKLRQVNENLPTGQARIYINESLTKSNKDRFIKCRTYCKANKI
RYIWTRNGTTFIKENDGSSTFSIKNDXDLQHLLKQLPLLKTT
>L2-1b_Cis_pol#LINE/L2 855-4205 [Ciona savignyi]
LLIMQTISIRKNACLNCSKTIRVNQNFIYCDNCNANFHCKCLPTPPKQQLNIKKNVTTLHHKWFCDNCQDPPCLPFSNIP
DLELSSLLSISSSQTNPDQVTRLTLDPEKLNNFFDNLNENMLDEEDELTSIRCPESYVNTNQCKSFLFEKHQGLTILSLN
IRSLANPNNFTKLEALVASLQFKPEVIAITETWIVDNRSGHYSNLPGYVFVGNSRSKSRGGGVGMYIRSHLEFQIKDCIS
IMEEKVFESLFVVFPTLTPHXKPNPKSSLICGVIYRSPKLDKQSNSVFMHKLSESLEKIDNRNCNCIIVGDFNYDLLNIN
NNTVTDFTNTMQDFCYESIINKPTRFTDSGATAIDHIWTTIKPPLVKACILTDTLSDHLPVILALRPNSENNSKSNGSQS
SSRSFSDANIVSFNNNLQHLNTDNIFCESDPNLAYSNLIEQYNTEFENSFPLVSNKAPKYHLKWFNEEVKELNKTKQKLY
KKYILKRTVSSKLEYNKARNLYHHKIQAAKKCQYRKIFKTNRNNIKATWRTINELLGKSKPQISKSFEIDGLSTSNPIHI
ANHFNDHFSNVATELVNRIPPSTSHHTDYLKSQSSSTMYIFPTSPHEIKTIILDLKSKSSSGLDHIPSKVVKSTPVNILQ
VLSYIFNLSLQSGKFINDFKIAKVIPVFKKGKHSLINNYRPISLLPSFSKIIEKLMYNRTHSFLSHNNVLHNNQFGFRKA
HSTSHASNLLVNIISDHLENKKSVIGVFLDLSKAFDTIDHDILLNKMSHYGIRGVALDWFTSYLSNRQQIVDFNGTLSSN
LNPVKLGVPQGSILGPLLFLIYINDLPNCLTHSKAIMFADDTTIFTPGRNQSITCDNANADLDRLYTWLSSNKLVLNTDK
TKYMYFSNSTKSTSLPPPLISINNYKIEQVNSFKFLGLTLNDNLSWKPHMQILHKKLNTNLLMVRKIKPLVDQPSLLTLY
HSLILSHIHYCISTWCYGNNQMLTKLQRVCNKFIRLIFNLGKRENTVSIMRQHGLLTIHDMHKLEILSIMHKCHNNTLPP
ALHNCIPNKPKTTMKTRSNSQFLIPFCNKSLSQQSLKYIGPKFWQQLPNNIREIKSLKKFTKVVKQHLLEDPHPLP
>L2-6_NVi_gag#LINE/L2 884-1966 [Nasonia vitripennis]
MPVCRKCGRNIVTRAVSCYQCGLDFHAGCLARFVKSKSCSGCCLKTHKALSTPPDITSLPSRCERDSIFDAGRDLGSTSL
LDISDLSIASLSSEFTRSADPASLTENRLDDSSSHSLPCSSTMSTPSNWNAMSVDDKLGELFNVITSGNTALSSKIDALA
AKVDNQESRVTLLENENAKLTKEVASLKERFDKSCKYAEIKVSGIPPTCQASLHDITRAIFTKLNVANYITDVHSVRAIV
SRPQSNAAEASQLSSQRAPRPLVFCIRFKSFCVRDDVLRAKRLFGPIKFSDIYPGGSDTSIDMHDMLSPFLHNLRLAVKT
RANALGYKYVWVRDDKILVRKADGSEIIPIITANDLERMV
>L2B-4B_AAe_gag#LINE/L2 305-1720  [Aedes aegypti]
MTECKQCGAPVLISEIPTTCTGCLSVYHYKCTPLTKAVAKLVSENENLLFKCSDCLSSQCCGEQNLTLPTVRMFEEEMKK
ISSISDSFGGVREQIAAQINDALKTGMEELVRSLNSTMDKAIFEMSKSVSKELESMKCSFFEFNSNNNLVAMNDKHGTSS
TASEPSLLPRGKKRKVQEDVCAMSDDVFVESISFADVVKSNAGIKIRNKSTKKKSTANDVMQVTRKARPVIVIKPKESNQ
SSEDTRKILINKLDPKKHKISNLRHGKDGSIIAECATGYNVNVVKDGIQSDLGENYNAVVPSSVPRLLVKGMSDQFSSDE
FIRILKDQNEDIAINEVKVIRMYENPHFKYKKYNVVIEVDKETHSCLLTAQQVYVKFDRCRVVPEISVLRCFKCGEFGHM
STNCKNCDACCRCSGSHKTSECTSTVLKCINCIKMNKERKMNLDVNHGAFSYECEVFKNLYQRKKSSLHFNE
>L2_AC_10_pol#LINE/L2 2351-5350  [Anolis carolinensis]
LATDPNHVGGEGGPEEGGTIQVVWGRRLAGHQHPREKRNRVLATLEKVGSGRPHGSPLSLKVLLINARSVNGKTAAIQDL
ILDGGADLACITETWLDELGGVNLTQLCPPGFGVHQQARLGGRGGGVAVVYRQSIAVVRCSVPQASGFECVHLRVGNRDS
VGFLLVYRPPRDPVVSLTELAEVVSNSALVSQRLVVLGDFNIHAETPLTGAAQDFMAAMTTMGLSQIIAGPTHQAGHTLD
LVFVADSGMIRVEEQNTLPVSWSDHYLVSFRLSATLNLRRGEGQIKIVRPRRLMDPEGFLRNLGVLPAMEPGDPVDVLVD
LYNREVTRAIDTIAPERPITLRHDKPSPWFTGELAVMKHTRRGLERTWRSSRDVSDRARATAFLRAYTVAIRAAKESYMT
TRIASAANRSSELFRVVGELLQPPVVEETFDDPATRCRDFAHHFADKVAQIRLELDSNFTTVPGEVIEASACPILWDSFR
LVLPETVVEVLGAVRATTSVLDPCPSWLIKSAREGLVDWFVLIINASLEQGXFPSYLKQAVVRPLLKKVSLDSTVLNNFR
PISNLPFLGKVLERVVASQLQGFLDDINYLDQSQSGFRPGHGTETALVALVDDLRRELDRGSVTLLVLLDISAAFDTIDH
GILLGRLSGMGLGGTVLSWLRSFLEGRSQMVKLGDACSDPWPLSCGVPQGSILSPMLFNIYMKPLGEVIRSFGVGCHLYA
DDAQLYYSFPPNSKEASRVLDECLAAVSIWMRRNKLKINPDKTEVLLVDRNPDRGIGWQPVLDGVTLPLKPQVRSLGVLL
DSSLTLEAQASAVSGRAFAQLRLVRQLRPYLAKADLAGVVHALVTSRLDYCNALYVGLPLKTARKFQLVQRAAARMLTGA
PYRERSTLLFKELHWLPFTFRAQFKVQVLTYKALNGLGPSYLRDRISVYEPTRSLRSSGEALLVIPPASQARLVGTRDRA
FSVVAPRLWNTLPKDLRQAPTLAVFRKNLKTWLFQCAFPD
>CR1-43_HM_pol#LINE/L2-Hydra 1406-4453   [Hydra magnipapillata]
MGEKELNVTNTNITLCAYNCQSFKSNSYYISKLLKSFDIIFISEHWLLNIESFLLNNIALLTHKVFFHAAEKNTHGRPYG
GNAFMVRKKLSSFYIIHEDENILAIKGTLNNRNLIFIGVYLSSCRNNNESYAKYSSQLQTITSIMNNYEDEGECIISGDF
QSFPYKIYDSELRKNKTRNNFSKHLTNFIESNQLAFVDIINGAGPTYTYQHKTLSNSSYIDHIASYKQTELCFTNCQVMQ
SSPLNLSDHLPVSTNINFEGTGLSHEINNIMQKYNSIPKHAWNNERFIDFYNLNLSKAFTSYAFKEDKIEEEIQKTCLYI
KNAALLAVKQCFGQKEFYKYSKPWWTPELKKIKDNLSFHFRQWQKSGYNKSTECISYKRFIYSRKNFRKAVKAAHNKKIH
EKTKNIEHLRNTNPQRFWGNIRKIKKNTNNRLFTINKLQNKNEIVEEFSHHFQKLLNTPQYTNNEFNPLQIPHLSKEPNS
KVISTADIEKCILKLKNNKSYDCYEISAEHLKNSHNKNLLILLSSFYNNMLTNGKVPHGLSTAKIIPLVKSYKTSLENPN
NYRGISIIPIFTKLLEYLIIHICPDITESHSHQFGFKENSSTLHAEFLLSETIKHYNHNNSPLYICSLDANKAFDSCNWE
LLFEKLYYQKKIPLSIVHTILSLYQTGTSNISYLGCTSNKFRLSQGVRQGSILSPHLYNIYTENLLEKIVSESKVGTSIN
GVYTGIIAYADDIVLQSSTISGLQSLINIVQKYGLSNFIKLNTEKTEFLISGISSILINVIYINGDPIKPQNNLKHLGFL
WDNKNKKMTATLQKQNITERVTQFLSVAKGLIRNGLRFCQPATIVHLFNSLAVPTLLYGLELCGSSNKFLNSIDIAGRSV
LKSFFNISKQSRNYLHSYFKVDAVSDILFRNKLNLFIRLLNNPICYSIIRTQMPLMNQRSFVGEVMIMCKKADINMLQFM
IEGKKIIIARPQEALEANVAAILKQSFQHWNLKEQREVFRTLMEENIPRTMQENT
>Nematis_C4_pol#LINE/Penelope 118-1908 [Caenorhabditis brenneri]
CQKIKKAPRGSGILEEQRRTALSISDKGGEFVVSTRDLYRETVEKHLQDRSVYREIRQLEYENAVTLLKHAQEEVYRSWN
RWTVDRLMDPHPSINTFYGLYKTHKFVERGDKANSKNIKIRPIISGSGGPTDRPSWVVCTIITQLLQFVPCHLKSTSEFL
EELGRINSPNELHYESFDVESLYTNIDNRMAMEAVVRKLRKHSTEIEWFGMSVREVTHLLNACLNFNMFQFNNKLYAQKR
GLAMGSRLAPVLAVLYMDIIECPSKIHPTRLFKRYIDDFIIITESQETLDQVFKSLNAQAETIKLTREKPSEGWLPFLNC
QIRQRGNGFETKWYKKPSNKNILIRIESCHPIRQKRNIVKVTRKTAERTTSEGNRDEAEKLAAKILLKNGYGTEWEKFRN
TKGHRWKQPSRKTDPGKPVTTILPIPFISDQLSDLVRKTLNDVGIDATLVELKGKSLKDQLVHNRLFDIRCDKTKCRVCP
TLGVGACGKKGGIYQLTCECGEAYIGETGRPLVMRIDEHVRAANNPQRPSYATNAFSKHAKAKHGGL
>LOA_gag1#LINE/LOA 288-1813 via tfasty with Gypsy7_Dpse_gag, 1 frameshift and 1 stopcodon. [Drosophila silvestris]
MAVQRSNEDIAASINADMVLCNICRAPVLINTEIAETPCKHKFHRSTxLRTNETCPSCRTPCTLSQLIDVKSQSSKGPFQ
VPRTVRGGHRVGATHRNIPNIKSNNSGAQAYRPNTNFNVGNRRDSFNASLDPSIPSEQRIQQLISNSLDTFRASMVVAVS
DEIILAIRNLNISNNQQEARIESGVEQNIRTAVDNRSTDSIERPDKVSSIISSWHVQFCGSFNEISVEDFIYRINRLTDE
CLNGNWNLLYQFAIILFCGPALQFYWRFQRTNSRSNWFQLSDALRERYREQRPDEKIKDSLRSRKQRSGERFVQFLDAIQ
CIADTLREPMTDRELVANIKRNVKVEMRLELLHVASPNIATLRTECHKHEQFCLSMSSKPVPRPTNTSHFLNEVIHEEES
IDTSHIYSTESTEINAIRSVDRIKCWNCNEVGHRYQDCIKTRRRPGVFCYGCGRFDTTHRKTCNRMSTEHNQLISTYSLG
STICTPPIPNNNTSLSKNLRCKQLHGNLN
>Neptune1_Ac_pol#LINE/Penelope 693-2936 [Anolis carolinensis]
TQSFFSRGSKCQTEDLVVNLSRRVLTPQEREVVNKGLSFVPKPKYNPFRMRIELARLFRTIRLRHHFGTKINPITSTFKP
RSNFFPTTDHIGLRVFEKTVSEELCCTIIKQKRSYSTNFSSKEWHILHNLANDKDLVWKPADKGGAIVLMNRTDYMDEIH
RQLSVREHYLNIERDPTHHIQSIIRTVTLEGLALGYISEDVYKFLHTPWPRIPVLYTLPKIHKNIRPVPGRPIVSGSGSV
LEPLAKFVDHYLQPFVKQTSSYVRDTKHFINIIESLVIPTDAVLMSVDVISLYTNIPLEEARYICESTLNRRPNHHPPTF
FLLDLLDIILEKNYFKFDEKYYFQIQGVAMGSPVAPAIANLFMDNLENETILNHTKNPVADGIIKYCRFIDDIFIIVNSH
QEAVTLLSWINTIHLKIKFTGNISSTSLIFLDVVVTKENDRLKVSNHRKTTDRNSLLHYNSYHHWALKNNLPFTQMLRIK
RNSSTLQDFNQEMEETKSRFRNRGYPESIIQSAYSKVASIPRSKLLEDKIRPGVDRLIWPLTLTSLSNLAIKTVKKYWNL
IRDIPGCDRPPLVAYKRTRNIGDILVHSNITNRPRTVKSNLVGNYRCHHCSVCSQLIETKILTHQHLSFEFKFPHFATCT
TKGVIYMIICDCNLSYVGQTRREVKSRIIEHRSKIRNHVRESILYKHFCDLQHSPESFKY
>Neptune_Hyd_pol#LINE/Penelope 1491-3356 [Hydra magnipapillata]
MRTLFPPGENFRHDRDFKRWVDSEKVRMLTALTDKMITNISDHVLTNEEKEALGKGLKFIPNSQKVGREVYEASVEKFKR
KLRLKMFFKDRKEQKRSVFYKKSSWVPPETENENILEYFGKIDRDLEEMWNREIPRKRNNLKPEVWRALKNLQNNRDIII
KKTDKGGGLCIMNKTTYEEKVNELLMDRTVYRELQTDQTNNIVRGITDMSNYMLKLHKINEQTAEFLLPHKPCRPPLFYG
LPKIHKPNIPLRPIVSACSGPTDNLSEYLTRFIQPLVESLPAYIKDSIHFLNMLQNIRLQSSEFIFVTADVTSLYTNIPH
RDGIDAVVHYLRLIPLQDRPPDCPSPGIIGNLIEEILSNSTFSFGDKHYHQLTGTSMGTRVAPCYANLFMGRLDEQITNQ
FPNHITFYRRFIDDIFFIFQGPIEVLDQICNFMNTIHPTIKFTFNHSATSINFLDILLYKNEQGNIHTTIYRKPTDTMGL
LHYDSHHPTHTIPGTIYSQALRYCTIITELNNLQKELKYLTMTLVLRDYPLHIINNNIKKALHKTQHELINNRRAQENTE
RLTIVTPYTPIGQQINSIILSNWNMIDPNLQLQDIFPH
>Neptune3_Ren_pol#LINE/Penelope 879-3410 [Reniera]
SKYISLGSNKTKAKVTRDNQGTSKKATLKLKSTSIKKTENNQRFFSDRPKETTGQYIDSNTIMHAQHSSIHNFSNFHLTT
NHINILNRGLSFSPTQSFNPQDHVSFLTQYDLLSISLRNNALTSNSNNTVTISDVETEEEFLYRPMKFINKEKETVKIRE
NRFITDIPDLESFIEGTKILIDKLLKREYRTRKKSNLSNNERKALKNLKTTEITIKPADKSLGVVILNSSDYVHQCLEHL
ATDTYARVNSFPSEDIKRKVKNIIISFKKDLEPHKRLYNYLFPNSSHRTPRFYGLPKVHKSLNERGIPPVRPIVSHTNSI
LSKTAGFIDHILQPVAQFFPDYIKNSTELITELENLTLKQDVILVTMDVINLYPSIPQKECIEIVHNEMVTHSELVTSNP
NLITQLLQLNMTNNFFEFADITFLQRKGTAMGAAFSPTVANIFMSTLLRKFLSSTSDRPLFMRRYIDDIFMVWPRNKDLD
KFLSELNNFHPQIKFTTTQSDTAVNFLDITIYKNSNFTATGKLSTSTYEKENNLFQYLHFESNHSISIYKGIIIGEAMRY
VRTNSTEEKYKEQLSKFIQRLKERKYPESFIYKTLRNVSYKRRTLYLRKVTKAKPQIMNRPKMKCIPPPRYLQLKKIIIN
EFHRYNLSRYCNQPLFITLKNTTLKDLLVNSKHKPTEEDGRTIVAKTKEIKNHQSHNLNVIRKAEVKQPSKCNHNRCATC
QHFNPNINFNSTSTRQTYRIRHSFTCSSSNIIYLITCEKCRKQYVGQTTKTLRERIYHHRSSIKTGQRRYISKHFNLEGH
KI
>LOA_Ele3_gag#LINE/LOA 344-1921 [Aedes aegypti]
MSANNQTKIKGVDCLPQFEKGDDCLSQSDETETENAFGKLGLTEDELLSSSHENMETDLPLTLPNDPGLHPSVEPMDDEE
DGITVTINLSGSQPSITGSNVTSGPIDGKTDQHPTDDANKQKPTGTKKITRSQRKQLKALRQSGLSRPEALSRITGGEAM
VSTPSKRTRQDLDKSTNAEEEHKQKRMKQHLNPRKRVGQQETNSSTASTINKPPPEDKKQTSLSYGEITSRRRVGIIPKD
FPTTQLSTTQLDVLQEALLLRVEQQRNATMKPKFSNLIYKSGHMVLICKDQETAEWVKEITPALNPLEGVELVAMDEDKI
QRPELIRAFFPQSAQYTDDRIKALIESQNDLITNNWRVMQRLTPNNKHVVWVFNVDGPSMEKLIQSKFILNFRFGEIQLR
KVKSTTPNSNDNPTGQPTQEKSEEASSSIPQPTPTIQASLSSSDGKDAYLTSLPGPSGVTSMAPNKGSGNVKSVKLTTGD
KPAGLGKGKDKNQNLRHPPKSKVDDPQHPKKDGKRPENAERLSND
>LOA-2_DPer_pol#LINE/LOA 1241-4822  [Drosophila persimilis]
MLSVLQLNLHKSKVASAELLIAMEQGLADIALVQEPWIATGNSVAGLKSSNHNLFYSTSVSRSRTVVLVRKGIHAYLMSH
YSTDDLTVVMLESEEKRLLVASCYMAHDRPAPPDELRSLVTEAGTKNYQLVIGTDANAHHNVWGSTDINDRGESLLDFIL
ATNLYIANVGEEHTFVGPTSSNVLDLTLATGNSTTVSSWRVLDRPSFSDHKYIQFKCEFKHPSKTTVYRNPRNTNWAKFK
KTVTSKLANPGSVKSAEDIEKSLKTLSNELLNAYHASCKPSRTKRRSKPLWWNRDLSLQRNNLKEFFKIAKQANEEIVNE
EYKILLRSYKKEIRKAQRNSWRNFCSNIEKVPETARLRKLLSKQPTVQSQLKLDNGQWTEGSKEALTALMEAHFPGCTEV
TDAKEHQDLATEEQHPPIGLLTTKRIHWAIDSFAGIKAPGLDGIFPAMMQLTKEVITPWLLAIYSACLSTGYIPIQWRTS
RVVFLPKAGKCSHVSPKDYRPISLTSFILKTLEKLLDLHIRNEVEGLMSTNQHAYTKGKSVETALHSLVATIESALHNKK
YALGAFVDISGAFNNVATTAITSRLEANNIHPAINVWIKNLLSCRRVQSEWGTASMVKGAHRGTPQGGVLSPLLWNLVVD
DLIKRFERKAPKITAYADDISILITGVCPSTLSSLMERTLREIREWAEEVGLSINADKTDLILFTKRYKVPIWTPPKIDQ
TRLTPKSQVKYLGTVLDSKLAWRPNVVERVKKATIALYASKKMLSSTWGLSPALMHWIYISVVRPTLLYGALVWWQATEK
KTYHKLMEKTQRQALLCITGALRSTPTKALETILGIDPLDIHARLIAGKAAQRLIASGNLSPQGYGHSSIGREMTRSTDY
MTPQTCLDVKTTTSLGPEDWKIGRDQTEHLNIYTDGSKMDGGVGAGLYCTDPEIRLSYKLPDPCSIFQAEVFAIGKAAEV
ALLTERAHDAVNLFVDSQAAIRSMQSSVVSSRSVLASREALDILSTTKTVRIYWVPSHQGIEGNEAADVLAKEGVGLENR
RTENVPVSLRTLQGDLEKQARAQTDSRWRSTTTCRTSKIMCKERNEKLSHYLLHLPRKDCRLMVGILTGHCLAAAHAAKL
GITNRDSCRKCEEPGAIETLEHLICNCPALSRARRRYLGAPVLASLEDASKRTPQELLAYAKNTSILGDFLKPH
>Loa-2_DF_pol#LINE/LOA 1876-5520  [Drosophila ficusphila]
MAAHSSTRLAQVNLHRAKAASAVLARLFTNQHLGLALXQEPWCNQGIKGLYTKESKVICDQRGAHPRACILIRKDINYNI
FSEFLSSDCVAVTVSGAGRLPAIAIASAYFAGDAACPPPEIIGLVECCRRKKMPLIIGCDANAHHVIWGSTDVNNRGEQL
IEFIVNSNLEIGNVGSTPTFITRVREEVLDITLMSRSLGPLIKNWHVSPEESMSDHRIIRFELDFNTARDAPKRNPKKTN
WDRFKSSLELDLSNEPSGIPRHSLELDQAVDNLCKKITNAFEDSCPLGRRKADRDAPWWNDNLERLXISTRRLFNRAKTS
EDNWGQYKQSLTLYNKEIRKAKRKNYRDFCEAISTAHEGARLHKAMAKVAPESNLALRKCDNSYTSDDRDKLALLFKTHF
PGSSPLAEDTSNPMEASSTPRHLRPSAEDWAIAKSLVSPERLKWAIGTFQPFKSPGLDGISPSFLQQGLDLLLTRLRRLM
LSSLAIGHIPNAWRRARVVFIPKAGKKDITNPKSFRPISLTSFCLKTLEKLVDYHIRSTVLKDCPLQPTQHAYRAGRSTD
TALYQLCHTLEGAVDNKEVAICAFLDIEGAFDNASHDAVLAALARRNIDATTRRWIGALLSSRQAMATIGNSTMTVATSR
GCPQGGVLSPLLWSLLVDELLKKLADRGIQCQGYADDIVIVAKGKFEETLCDIVQLGLKITLDWCREVGLNLNPAKTVIV
PFTKKYKLKKMRQIMLLGTPVAISREVKYLGVTFDRRLTFATHMQKTVDKCLRALFTCRKIAGKSWGTSPQIIRWLYLII
VRPILTYGSVAWGKRARLVTAQKQLQRLQRLACICMTGAMRTCPTAALEVLMELTPLHCVVELQRKATLLRITSCGNGSD
RILSSRDAAKLLVELPLSSHPRDEMTVEFIFEKNFSAHLSNKKEWTTMKEVHSMASHTIAWYTDGSLTHQGTGLGVVGPR
IKYHESLGQYTSIFQAEVCAIGRCAELNMKRGYTNKDIAILSDSRAAITALCSNRITSKLVREVRTKLNLLGSNNRLSLR
WIPGHKDISGNELADRLAKLGAERPLIGPEPYCGIGRHTVKDYLRTEEVHMRQACWVDTTGQRQAKTLIVNYDMKRFKKL
ILLGKRSLRIVTGLLTGHCKLRRHLFNIGITNRKTCRFCDSEDETSLHIISDCPALSSLRSRTLGSRFLTLGTSGSIDPI
KLLNLIEGAGLMGEL
>LOA-3_CQ_pol#LINE/LOA 960-4634 [Culex quinquefasciatus]
MSKSIKFIQINLHHARGASGALSQKCLKENVSVALIQEPWAHKGKVLGLDTQNSTIIYNPLNDKPRTAILIKRDLNYVPI
TEFILKDIVAIKLEIPTAQGKTEAYIASAYFPGDENEVPPPGVAAFIQFCKQNNKQFIIGCDANSHHTVWGSTDINNRGE
YLYEYISANNIDLCNKGNQPTFITKTRREVLDLTLCSPFISPRVRKWQVSDEESLSDHRQIEFEYDAGEIITVSYRNPRK
TNWELYKNKVKSIQIDKIEDKNHLEKAAKNITDVIISAFNESCPVRKQKSNRDVPWWNDALGKLRKKARRLFKQSKKTKQ
WEQYRKALTAYNKELRKSQRKSWRNNCEKIEKTPDVAKLQKALSKEHSNGLGSLKKPDGKFTENSAEVLEMMMETHFPGS
MIVSSDSGEMEEDTNSGLEWTIGRNTNLPSTIFTRSKVAWAMNSFQPFKSPGLDGIFPALLQYGGNKLLESLTEIFKASF
KLGYIPKIWSKTRIVFIPKVGKKDKTAPKSFRPISLTSTMLKIMEKIIDEYIKSNILKTFPLSKAQFAYQQNKSTITALD
TLVTKLEKNLEAKEIALTAFLDIEGAFDNASYSSIKKCMEKRGFDPCIIQWIMTMLNNREVFAELGMSTITVKTTRGCPQ
GGVLSPLLWSLVVDDLLNKLTTEGFEVIGFADDVVILTRGKFAHVLSERMQYALNLTSQWCANQGLSINPAKTILVPFTR
KRKFTLKTLSLNGSNLKYSTTAKYLGVILDEKLNWNSHLEQVINKATAALWVSRNTFGKQWGLKPRMIHWIYTAIIRPRI
TYAALIWWPKTKQLTAQNKLQKLQHLISTSITGASRNTPTKALNAALHILPLHQFVQMEAAKSVLRLRRTNNISEYNSVE
HLQILAELEINQGVFEITDWMESKLDLDVPFKVVETNRLEWESGGPTIPPGSIIFYTDGSKMGNKTGAGITGPGLNISIP
MGQWTTVFLAEIYAIVECTAICLKRNYRFAKICIFSDSQAALNALKSPTCQSRLVWECRTLLKQLASRNRVHLYWVPGHR
GIDGNEIADLLARRGSDGHFIGPEPFCGVSKSTLNMEFTQLEKKLIQLNWVKAHDMRQSKMFIVPSKQKFAQLMNMNKKY
LRIYIGLITGHCPSRYHLKKIGLSPIDICRICNCETETSKHLICECSAVSAKRRRIFNKGIISPNDVWLENPGTVVDFIL
EILPNWGTSQCQPMTVTLNGNVSS
>LOA-6_CQ_pol#LINE/LOA 1-2361 Fragment [Culex quinquefasciatus]
KVAWAVHSFEPFKSPGLDGIFPALIQHGGKKLIEHLSNIFKASLTLGHIPQIWSKTRVVFIPKAGKKDKTIPKSFRPISL
TSTMLKIMEKIVDEYIKSKFLKKRPLSRFQFAYQSNKSTITALHELVTRIGKSLEIKEIALAAFLDIEGAFDNTSFNSIK
NCMIKRGFDSCIVQWIMTMLDNRIVSAELGISTLTVKTTRGCPQGGVLSPLLWSLVVDDLLNKLTDDGFEVIGFADDLVI
LVRGKFDLTISERMQHALNLTSQWCRNEKLNVNAAKTVLVPFTRRRKLTLKTLKINGLDLQYSKHVKFLGVLLDXKLNWN
IHLEQVVNKATNALWISRKTFGKHWGLKPKMIQWIYTAIIKPRITYAALVWWPKTKQTTTQKKLEKLQRLVCLSITGAMR
STPTKALNASLHIPPLYQFVQMEAAKSALRLKKIQSKVESIEHLKIISFIKINQNVFMTSDWMESTLNLDEPFKVIETNR
NEWESGGPRVLPGSVIFYTDGSKMGNKTGAGITGPGVSVSIPMGQWTTVFLAEIYAILECASICLRRNYRLAKICIFSDS
QAALNALKSPTCQSKLVWECRKLLKQLASKNQVHLYWVPGHRGIDGNEKADFLARNGSEGHFIGPEPFCGVSKSVLKMEF
VKHEEKTIQSNWTKTQLLRQSREFITPSTQKSKKILNLNKKYLNIYIGLITGHCPSRYHLKKLGLSQIDICRFCDCETET
SKHLICDCSALSARRRQILNRPILSPKEIWQENPSKVVDFILEIIPEWGIPQRQPMTATLNGNVSS
>LOA-4_CQ_pol#LINE/LOA 149-3775 [Culex quinquefasciatus]
MKRFIQVNLHHAKGASAVLCRRFMKNNIDVGLIQEPWINNGKIKGISAQMGKLLYDDSSPNPRAAMLVKNNTKFIPITEF
ISRDIVAIQMEVPTVRGSTWVCIASAYFPGDTDEAPPADVTMFISYCKKMNKQFIVGCDANAHHTVWGSTDINSRGENLL
NYITTNNIDICNNGDCPTFVTATRQEVLDLTFCSEVISERVINWKVSDEISLSDHKQIEFEYNAGEMIVGKYRNPKKTNW
DAYKIQLNDYDFNSEDEIRTVEQLEKASSELIIAITDSYTASCPVQQRSSSREVSWWNEKLAVLRKGSRRLFNRAKKTGD
WDSYKRALTKYNKEIKRSKRSDWRRSCEKIEETPIVARLQKALSKDHSNGLGNLKKADGSFTKNASETLDLMMKSHFPGS
TEVTSGIDQAEGERLAKDWSVLAHNQACEIFTRSKVDWAVSSFKPFKSAGTDGIFPALLQQGKDIINAKLTDIFRASIAL
GYIPKAWREVRVIFIPKAGKRDKTSPKSFRPISLSSILLKTMEKILDDFVKRTFLTKFPLSNGQFAYQSGKSTITALNCL
VSKIEKSLKAKEVALAAFLDIEGAFDNASHSSMRSAMEARGFGSCIIKWIEAMLIEREISADLGGERLVIRPRRGCPQGG
VLSPLLWSLVVDDLLKKLASLGFELIGYADDICIIVRGKIGSEICNRMQSALNFISKWCKNEGLGINPSKTVIIPFTRRR
SLVLPDLAIRGITIEFSNEVKYLGITLDRKLNWNAHLNNVLNKGINALWVCKKTFGKKWGLRPKMIYWIYTCIVRPRITY
ASLVWWPKVKEKTAQNKLAKLQRLATISITGAMHSTSSAALNSLLNLLPLHKFVELEAFKSALLMNRSTRIQDKDLTGHL
EVLKNFTLNPALNSIVDWMPTKANYDIPFTVDAKSRYEWDNGGPNLRPGSIVFYTDGSRMNNKTGAGVFGPGIKTSVPMG
QYPTVFQAEVYAIIECLRICLKRNYRFANICIFSDSLAALNALKGYTCQSRLVWEGINLLKQLSQNNAVNLYWVPGHCGI
LGNEIADSLARKGSETDFIGPEPFFGVPDCSLKMELKRWELSTINSIWNSTDTSRQAKRFIFPGGKLSRELLKLDKKNLR
VITGLLTGHCPCKYHLFNMRKIPNAICRFCNIENETSEHLLCNCGALIQSRISFFGKGVLQPSNINRFRPSRVIDFIKQV
DPNWDNTQ
>CR1-21_DR_pol#LINE/Rex-Babar 2-2530 [Danio rerio]
GTFGSRLYVFWPLLRVNRMPGFCLSTMACFASQTEEHGNLRAVYVNKRYCTAVTVRERICTPDVELLSVSLRPFYLPREF
PQLFVTIVYIHPKANAMSACGTIFNVVQRLQMISPDAPNFVLGDFNHVSLNKTLTTFYQYVSCPTRRDRCLDLCYGSVKD
AYKSLPLPPLGSADHNCVHLIPTYKTVLKRQKTQTMDVMDWSDESALCLQECYDCTDWEMFKQSCGDNFDMFVDTVCSYV
AFCRDMIIPCRRVKIYSNNKPWVTKSVKSCIQKKKLFFKQGSNSDLYLANKELKREILLAKQNxKTELENKMATNKLGSA
WDSLKTITGLHNLKSSNQINLVGYSTDFELANALNHFYNRFNHLDFTSEIEELNSKLTGGQHFIIQQTAVHKAFLSVRVN
KSCGPDNICGRTLKICARELSPIFEYIFNRSLLEQQVPKVWKDAVVVPVPKSKSPQTFNEFRPIALTSIVMKIFEKFVRS
EMLRRTEYALDPMQFAYRPHRGVEDATVTLFNLLFKHLEKNGSHARLLFVDFSSAFNTIQPHILIKRLLEQFDLSNNLVG
WILNFLTNRTQSVRVNGCLSDKVCSSTGSPQGCVLSPLLYILYTNMCQSRWENRTIIKYADDTVIVSQLHDDETGHGPVL
TDFVRWCEESYLQLNVLKTKDMIVDFRKAAHSQVSTSIKNQTVESVQSYKYLGTIIDSKLSFDENCAAVCKKGHQRLFCL
RKLNYFHIDKQMMNLFYHAFLESVLSFALVSWFGNLSVKNKNSLNQIVKWSSKLTGVSLANLEAVYTRQLKRITNSILND
TAHPLHSEFQLLPSGRRFLVLSCKTKRYKNSFIPAAIRHLNKT
>CR1-13_NV_pol#LINE/Rex-Babar 1-3096 [Nematostella vectensis]
RSAASARVATRFCALCRFVYLLLIFPAFHVQYTYSVLPGLAMASINIYTEFLAFFRPKSVASPQHQMASSCTTRISYSAS
SLKTMRKCSPKLRLPDDLWAKLKTVGIRKPPRSKRKPKKKETANHTSVVDSPPSDRPRNTRMIPVTLIANFRSLLPKMDE
LFSITEVIRPGIICLTETWLNNSIPDSAIALHNYVCLRKDRAVGQCGGVCVYIDSHIPCKRLLDFERPDVESLWISLRPF
RLPRHVTEILIGVIYHPPHLGSEENRILVDHFQENTDAFLRRHPEGLISICGDFNPSSTGISPQVVKRCTGLSQIVEVLT
RDSGTLDWTLTNKPALFLPPSQPPKIGQSDHYAVLVKPNNPLMAQKTEKKYTTRRDLRESSLCSLGRWLTTFNWDCVLNL
SSVNEKVHSFYEIFCKAIETFLPARRVRVCSSDKPWVSSRMKSLVSRRQSAFKALGKDSAIFKMFRNKVQKEARNCKRSY
FNSKVSSLKDTNVSKWWAEVKALSGLTDRSEWWHQLIDSTTPTTDALCEKFNTFLENVTSHFAPLDLDSCATTLPVPPDF
LVSDHQAYKALCSMKAKKSSGPDPIPSRLWKEFAYELAPVVANIYNSSLKEGHVPKRLKSSYITPTPKVSPPKVIEEDLR
PITLTSPLAKILEGFTLDLLTSQVIKKLDIKQFSVSGKSTTHALVYMLHVILEALDRGNNYVRIFFADFSKGFDLVDHHS
LLNEMRSLDVHPVITRWVFSFLTDRSQRVRIGSSLSLPVSPNGGIPQGTKLAPLLFAILVNKLVAQWPARIKYVDDTTVF
EVIPRCSPSYLQVVVNDISNFASSRGMRLNPKKCRELSVSFLQYQPSLPGELYISGLPIKRVDSYKILGVHLSSDLTWNV
HVEYVIKKASKRLYALRSLKKSGVQSNDLVRIYCALIRSVLEYAAPVWAGLPVFLSDLLEAVQRRAMRIIFTHTDYCTAL
TNAGLMSLSARRDSLCESFVTKAKISPPLNYIIPKATEVNHSYSLRSGYMRTDRFQGNTDRFNNFVSVRFQ
>CR1-30_DR_pol#LINE/Rex-Babar 51-1743 Fragment. Via tfasty/estwise with CR1-21_DR_pol, 2 frameshifts and 2 stopcodons [Danio rerio]
LKREILLSVIDxKKKLSGKLKAKAVYKGKLKMGNVGSAWDGMHLITGQDSKKTNKICLNEFTSDxSFSQNFNxFFSRFDS
HDFKQEIERMKNECRIDREYDCIFFDVKDVIMSFKQSKIGKAPGPDKIGGRLLKECAEQLGPIFYEIFVLSFQQQKVPAL
WKQSTVIPVPKKQKPQKIEDFRPVALTSLVMKSFEKIVKREITQKTQSVLDPFQFAYRPKRGVEDAVGTLLHLVLKHLDK
PKTLAKLLFIDFSSAFNTIQPHILVEKLINEFELDRMLVGWILDFLVQRTQRVKVNNCFSEWLVSSTGSPQGCVLSPVLF
ILYTNSCRSIFSNRYILKFADDSVIVSLLSEEDSTHGPVIDYFSSWCQEAFLQVNVLKTKEMTIDFNRKRRLIKGKQTSI
NGVDVESVDQYRYLGTVLDNKLSFSANTNMLCKKGQQRLYCLQKLRSFNIDKSLMCMFYSSYIQSLLSFSLLCWFNSLSV
KNKSCLEKIVNLGGKITGRKQMTMAQLYHRQVLSKAQSILSDDSHPMHHEFYLLPSGIRYRTPISKTNRFKLSFIPSAVK
FLNLG
>CR1-40_DR_pol#LINE/Rex-Babar 3-2952 Nearly complete, via tfasty with CR1-31_DR_pol, 1 frameshift. [Danio rerio]
SRWRRAWPPCCELPANFVVFCVFYLYFCRFSVLDVHTLITYDRHTLREIGSLVAHRRPDFEFFNDALFTNTATEPFVWVT
QPKRRRKRSRKRGKRAGVLVRLRRRGFRPPLPTILLANVQSLDNKLCELRARISFQRETRNCCIICLTETWLSAEVPDTA
VELSGFSVHRADRTKELTGKSKGGGVCFFINNSWCDERNIHPVRSFCSPDLEYLMLRCRPYWLPREFTAVIITAVYIHPQ
ANTEQALRELYGSISEQETAHPEAAFIVTGDFNNANLRKIAPKYYQHITTNTRGDRILDHCYSPFRDAYKSLPRPPFGKS
DHSSVLLLPAYRQKLKREPPTLRTFQSWTDQSDSILQDCFDHVDWDMFRAACDDDIEVYSDTVTCFIRKCIEDMVPTKTV
RIYPNQKPWINGEVRTALSVRASAYKSRNAEEQKQANYNLRKTIKAAKRQYRDKVEGQFNTNNARSMWQGLNYITDFKSN
KPATVNIAASLPDELNSFYARFEAQDSARTLRAPAAETETASTLSVSVADVTRSFRRVNIRKATGPDGIPGRVLKACAHQ
LAGVFTDIFNLSLSQSVVPTCFKTATIVPIPKSAKTTCLNDWRPIALTPIFSKCFEKLIKKHICSVLPAHTDPLQFAYRN
NRSTDDAIAFTLHTALSHLENKNTYVRMLFVDYSSAFNTIVPAKLVVKLQALGLHSSLCNWILDFLSSRRQVVRMNNITS
STLILNTGAPQGCVLSPLLYSLYTHDCTAKHSSNVIVKFADDTTVVGLITDNDETAYREEVHTLTQWCEENHLSLNISKT
KELVVDFRREKREHTPITINGTPVERVSTFKFLGVHIAEDLTWTAHTDAVLRKAQQRLFFLRRLRRFGMSPHILRSFYTC
TVESILSGCITTWYGNSTSSNRKGLHRIVRTAGRVVGGELPSLQDIYTRRCMRKAKRIISDSSHPSHRLFSLLPSGRRFR
SIRSRTSRLKESFFPQTIRLMNT
>CR1-31_DR_pol#LINE/Rex-Babar 4-3063 [Danio rerio]
MTKMAARAHAAASLSPDKTVFLCSSSCTSQCFCASTSRLSVRNRAYSRTFLLDIGRNKLYKLNSADTEELQDLGLLRMPT
HPPTPTSPPRPQWRRFKRRERKQKRGKRGGIRTRLAANPHKPAIPSIILANVRSLDNKLDYIRLLRSSQRTVKDCCVFVF
TETWLNDNVPDSAIQLDQLTCYRADRAIVAGGKTRGGGLCVYINESWCRDAVVVRKHCSPLVEFMIIKCRPFYLPREYTA
ILLFAVYIPPSSNANNRSEALNDLYLHISEQQTGHPDAFLILAGDFNHADLKSVFPKIQQHIDFPTRGNNTLDFVYTTQR
GAYKAFPLPHLGASDHLTVMLMPAYRPIVKVTKPVCKEIQVWPEGSSEALQDCFNTTDWDMFKQAATYNNTTDLQEYAET
VTAYINKCTEDVTVTKTITVRPNQKPWLTGEVFNLLKARNTAFRAGDEASLKSARANLSRGIREAKRQYSRGIAHRFNDS
RDTRSLWRGIQSITDYKPQPQTCDSTIPLLNELNKFFARFEVQNSTIAQKMPPPPGDQVMTLSPDSVRRSLSRINARKAP
GPDNIPGRVLRDCASELTNVFTDIFNISLTQAVVPTCFKATTIIPVPKNSSPSCFNDYRPIALTPIIMKCFERLVMQHIK
SVLPPSLDPFQFAYRPNRSADDAISTALHTALTHLDKKDSCVRMLFIDFSSAFNTIIPQQLSQKLLQLGLNTSLCNWLLD
FLTGRPQAVRAGSNTSSTITLNTGAPQGCVLSPILFTLLTHDCAPSHNSNLFIKFADDTTVVGLINKNDEENYRSEVSRL
AEWCRDNNLFLNVEKTKEIVVDFRKEHTLHAPLTINGATVERVSSTKFLGVHITEDLSWTKNSTALAKKSQQRLYFLRKL
KRARAPAPIMYTFYRGTIESILTSCITVWFGTCNASCRKTLQRIVRTAEKIIGVSLPSLQDIYSTRLTRKALCITADATH
PMHSFFSLLPSGRRLRSLQARTNRLKDSFIHQAVRKLNSLPALLPAPSPRTSSPRTSGL
>CR1-5_SP_pol#LINE/Rex-Babar 1-3144 [Strongylocentrotus purpuratus]
PSQRVNIELCCEITVSADKLAPNMLDNFGIIVVLSVIASLPHFIAESRPALLAGVTMEFQLVQNSIDTERYSDQYRYTKD
ELLSLRNTSHSRLPDNVFARIKELGIDKRRGCRAGSHKWRKIAVVEGRRRRTPKPPGVRAPQLIPIKTITTVSTDRQSQG
NLPTIYMCNPRSLNNKLDEFSVVVHELCCDVCVVTETWFRADQPESDFAVDDYLVFAKSRDSRRGGGVAIYAKPESMPKT
VNFLPPHPHHEVIWLQLRPKRLPRDISCLYVAAVYSPPDNDCVNDLIQYLVNAIDDIKTRHGDAGVVILGDFNRADTSEL
TSTCNLRQVVRKATRGTAILDLILTDIHQWYSEPEILSPLGLGGDHNAVLWKPKLNKTNSKNKAVRKFVRPMKDSAIREF
GQWISQHTWDDVMASSSAQEKCDKLYASLQNAMDEYLPMKSVKMHPRDKPWVTPYLKSLIGQRQKAFSNDRTEEWKRLRN
KVQNKKTELKKNFYKDRVLKLKRENPSSWYKHLKIMTSSKTASNIIIPESPELDDLAIADCVNDHFANVSQDIPELDLQS
LPAYLPTPKPQLTVQPHEVYKELNRIKPGKSSGPDGIPARIVKEFAVELASPLCEVLNSSYHSGSVPSQWKGAIIAPIPK
EKAASSIDKQRPISLTDHFAKIAEVFIYRKLLADVRHQLDPKQFGARAGRSTTHCLVEIYNFLCKRAELPSNVTSIVSTD
FSRAFDRVDHTILIRKLITLEVHPWVIVWICSFLTDRQNQVRYHGELSSTRSMTAGVPQGTRLGPLLFLVLIDDALRESE
VERWKYVDDMSLASAEPSNQHGQFMQNVLVNLEEWCNQNNVRLNPKKCNIMRVTFSKTPLPDRDFSLCNDVLQEVSAVKL
LGVILQRDLKWNDHVSVTISRASSRLYMLRRWKEFHLPAADLVTVYVGFVRPLLEYACPVWHSSLTCAQSAALERIQKRA
LRLIFPGTSYNTSLDLARIVDLETRRKTLCINFATKASRSEVGSDWFTENNPTRNLRKNKRYREPRCRTNRYQNSPIPFM
TKLLNFN
>R2Ci-C_pol#LINE/R2 gi|34392527|dbj|BAC82591.1| reverse transcriptase [Ciona intestinalis]
KFKQSKVKHNQKENKSKRQIRRAQYARTQINYKRNRQQAINSILSKQWRELDDRGPPLEHVLPFWQKLLEKSSEHDTRQP
EPVSGPIWELVEPIVAEEVRLVRKSMPTSAPGPDGIRHKDFMAVQPQILADNFNLWLLTGYQPKSCRLGRTILIPKEPGT
RDPAKHRPITINSLLIRCFHKILSNRIMKLIPLSPQQKAFRPGDGIAEHIWNLRHILNQHKLEKKELNLAFLDVRKAFDS
VNHSTLLLAAGRLGVPPPLLKYIENLYEGSSTTIIANGERSPRIRVRRGIKQGDPLSIPLFLGVMDWAMSNLNPNVGSSI
GGKSINCMAFADDLVLISRTQIGLQTNLDTISYNLNQSGMTLNSEKCATLRLAVDGKSKKWWIDHRPFLRVEGAKCGAMD
IEGTYKYLGVRVGAGDTRAECKEKLMSDLKETTEAPLKPQQRIFILRNYILPRSLHILTFTNTTARLLKQLDSAIRIHVR
RWLKLPKDTPLGYLYSDYKDGGLGVPRLLSRVPLLRIRRMAKYNTSEDPTTVALRSCHTFTSAAVKWAMPPKISNVVISD
KRKERDFHRSELATSIDGSGLSCANTTPRAHQWVVNGTGLLSGKNYIGAINARGNLLHTASRAARGRPQRTTDCDSCHRV
ETLSHILQSCPRTHGPRIRRHDKVTKVIAEAAGKKGWKTIAEPRIPTPEGIRKPDLILYQHGRAIVMDTTIVSDSADLSM
SHQHKVIYYQNECIRSWVQEATGATEVTWSSFSANWRGCIADESRDLLLHDSTSQKTAA
>R2A_NVi_gag#LINE/R2 812-2164 Resembling L2 gags. [Nasonia vitripennis]
MTEGLFSPPVDIGKAKDVEDEIRGHLYFLETVDLSRLSKESQAGIAKAVTGLTKGMDLVMYHVRTMTKEAGLAGAFSKVL
QETMRKVILKEREQHLQRVQNAVKSVGEKVQKAIAEISEIGTGMSSNVDINALAESTANKIARGWKESEKQQMSKLEELK
QSIDEAKTTGNNITYAQAAGNQWTTVGQKRKRILSSAGLEVTVTETEDVLIKPEQERGEEYPNAAVIIKKLKATIDPDEQ
NITVERMIPRTNMVVAVVKKGDGPKLIEGITRKGIGLLAETRKKLQPRILVQDIPEEMEEEELMARLKKNVSLEAQRDEV
RLIRMIKTRRGNKLAVIELPARAHEDLTHLQKVKIGWSICRIATDIRPNQCYKCQAFGHHAARCASDAVCAKCAQNHETK
TCRNKGARKCANCSKACRADCNHPAFDATKCPIFRAELEKSARNIDYSYSE
>R2I-4_PI#LINE/R2 379-5526  [Phytophthora infestans]
MLADPAALAAGLARAPPPPSAPQDPSPAFPAGPAGQNPRAAAPARVEVHTVVAPPGRAGGMLPDPGLVEEPIQATYAHDA
AQFECALCPYVAESMAVLVQHRRSAHRGTRFKDIFTSGCQCSLVFYARIVAASHAVACARRNQRAVPPAPTPVAPTRPEA
TPQPTGYLAAAMTAAAAAASSDTVVAAATNMQSAVPAAAKTTGLQLVPPELEPALPQRASCHAGKRRRLNADEAVTPCTP
TARVSPQTEVAMAPHDAPQDDTVLQREAAEPQPDPAATQGAQVQRVEDTTAAQDDTVQQDHDADTAQVSPPRRTPTRWGP
RPSSTQEPSPMTGEPAATLAARRPLTPAATGTRATRWGPCHRAIGAAAIARLVTGLPTEPAQPQRRQPPPPQEPPLQPEP
QAAAATVAADIAATVAADIAAAAANAAMDVDGGPAADETWLLRFDGACRRNPGPGGAGAALFAPSGAVVWTCSHFMPSRS
ETNNTAEYTALLLGAQSAVHHGAKRLNIEGDSHLILSQVRGAFACNNKRLRSLRNRVQASLRQLDWYRLQHIDRKANQHA
DRLANRALDLRRTVTECGPHAETRNRCFQTPQPLVEPGETHCVPGSDEVLAANTAMEDATAVPTEDDEAEVAARDGGEVF
PTIAIGPDSAPAKQPRLRLKKLDEDDFDAAAAAVTRVSEELASKIVDAGDWTSGEGYISAIPERLRAALRPFALPTQPAR
PQPREPRMQQPPRRPPRVTRDHLEHRLDEALDTMENVQRSTPQNQKAVRRARRRVGRLRSAMDRTRLRKKFATHERECVA
EILRRASTEEAANPSQEKCPIDRATLHEYFTATSTQRTPFDYDSAKGTEFRTFLEVMSTPSHETSALTAEPTLDEIEDQL
AHVKAGSSPGHDGVGYDVYRRFQVQLLPLLHAAFRFCWRHRRVPALWKVGFVRLLHKKGDPQQPNNWRPICLQTAIYKLY
SGLLARRLSKFLEANELLPMAQKGFRAFNGCHEHNFVATTLLDQTRRMHRRLYQVWYDLRNAFGSLPQQLMWGVLRQLGV
TEEFVARCSGIYEDSYFVVGNASDGATEPVRQEVGVYQGCPLSPLLFITALVPLLRALENQDGVGVPLADGVRPCATAYA
DDIKVFCDSATGIQRCHALVTRFLEWTGLQANPAKCAFLPVTRSQHSNPTRDRDIELRIHGEAIATLGLQESYRYLGVGD
GFDHVRHRLQLEPKLKQIKREAVALLHSELVPWQILKALKVYIYPKVEYALRHLRPLKSQLQGFDSAIVRGLRHLLRLPE
NSHDGLFFSPTSAGGLGLLSLVELHEALQVAHAWQMLHSKDPAIRAIARTQVGQVARKRFKLVEEHWRGREDDLAQRFLN
TELAASPHATETRRNGDIGSLWNDVRDTLQTLGLKFAAGDEEEAPGLLQLRVPHHTKWLSHSTVLRHVKLHMKLRRMDTW
KSKVSQGTTVREHGGVGSRFITAGAGLSDAEYRFAIAPRAHLIDTNSTLKRRRLRANDTCRAPGCSYTEPPAHILNKCSP
NMDAIRKRHDDALERIADALRRKVEKSGGRLEVAINKTVPEYDGAALRPDIVLRNTETKRAIIADLAITHENQPTDATTS
SALQQSRDNKITKYQTVAAAMMRAGWRVRVTGIVYGSLGSVLPSNFKVYTELLALLKRDARRLNRQLSSHCIRASARIWS
AHCRRHRERQRSGNASRASRGSGGAPRRTSQASARR
>HEROFr_pol#LINE/R2-Hero Previously represented by HERO_Fr_pol,  gi|34392541|dbj|BAC82598.1 [Takifugu rubripes]
VTTKNSXVDYWKDSWQLGKTAPGTVWVSTPACIFREKEPKQATESPTEKHPQEIPRGGEDEISNRTDLTLMTPAMEMTTT
VTCICSKLCKNQRGLKIHQARMKCLEREVEVQRTGPGPGETQEEPGQEATHRSQSLHVPEPPNPNRVVQQQRIKWPPANR
RSEWLQFDEDVSNIIQATAKGDVDSRLQAISTIIVSYGSERFGRIEKGNTETTSYTMNRRSFKIHQLRKELRTLKKQFKR
AXDGDKQALKELYNILRKKLKTLRRAEWHRRRGRERARKRAAFIANPFRFSKQLLGDKRSGRLECSREEVNRFLQNTMSD
PLRGQDLGPNRALISPAPPSAEFKLAEPSLKEVEEVIKAARSASSPGPSGVPYLVYKRCPEILRHLWKALKVIWRRGRVA
DQWRCAEGLWIPKEEDSKNINQFRTISLLSVEGKVFFSIVSRRLTEFLLKNNYIDTSVQKGGIPGVPGCLEHNGVVTQLI
REAHESKGELAVLWLDLTNAYGSIPHKLVELALHLHHVPSKIKDLILDYYNNFRLRVTSGSVTSDWHRLEKGIITGCTIS
VVLFVLAMNMVVKAAEVECRGPLSRSGVRQPPIRAYMDDLTVTTTSVPGCRWILQGLERLILWARMSFKPTKSRSMVLKK
GKVVDKFRFSISGTVIPSITEQPVKSLGKLFDSSLKDTAAIQKSTEELGGWLTKVDKSGLPGRFKAWIYQYSILPRVLWP
LLVYAVPVTTVESFERKISSFLRRWLGLPRSLNSAALYGTSNTLQLPFSGLTEEFKVARTREALQYRDSRDCKVSSAGIE
VKTGRKWKAEKAVXVAESRLRQKALVGAVATGRTGLGYFPKTQVSHARGKERNHLLQEEVRAGVEEERVGRAVGLRQQGA
WTRWESALQRKVTWSNIMQADFHRVRFLVAAVYDALPSPANLHAWGKSETPTCSLCSGRGSLEHLLSSCPKSLADGRYRW
RHDQVLKAVAESIALAISTXKHHHAPKKAISFIKAGERPRAGPQITTGLLHTAXDWQLHVDLGKQLIFPQHIATTSLRPD
MIIISEASKHLIMLELTVPWEERIEEANERKRAKYQELVEECRGRGWRTFYEPIEVGCRGFAGRSLCKAFGRLGVTGTAK
KRAIKXASEAAERATRWXWLKRADPWVATGTQAGS
>RandI-1_VC#LINE/R2-Dualen 87-11396 [Volvox carteri]
MQSFVLLVLTVFLLGADGRSMTEEGAMDELKGSVRTGLLYAPLLDPRPKSMGNIAQPRSVSLVKTTAPQELRDRSTRTNM
LGEQDTGILICQNNQARRICSNMNPLKQWQWLGSSSSHISGIFLSKMVGNPRAGSYTTTGKHYLPPGDSGILTARGPEPS
PTPRAPHSDLCKANRPWNAPPAHYNTRIKDAWVLKYFIEKTAVPLDCHTGDPPWQPLNAADRKRNQFPAPYQHYHIDPIH
SREIGPQDLRPLTAKNTKSPPPSCRLITKHGTKFCSISNAQIITHQNETHRKNHTNRTRTDKARATQRRCHPKCKASQYT
CTNQHQYTAYKNMAVVPGHFQGRPILGSHQGVTISTTRQLSDQHITLLHRNCHVRPNLHAGPRRTDALVKEMHCSIAWQS
DVCDSIKGWIGGEHKPVSCEGPLQPAETQYGCNSEPVVTHNQTLAHHSTRETDGRRTLRDNWKAGCTDNAYPSTGSEKEV
WGNRAGETSYQQGHSRIISRSTQKLLATSIGDDISTHSPGGIAASTARVIYGRLYRSACTAWTGTRYVLAVIALIVCMAV
ASMGVLCTVRKIYRTTTRRGMNTWKIIPQTSNAVLLMIILWGPLALVIAIWPLDTAISLVVQTTGLIWVIRHFTKRITTC
AVPAAIDLALACVVHTADTSYWAYQHPGVIRQMIVSVAALVMLCLHLATAAPMAPILAISIPTIDKGLNLIPELRGHARW
LINICLIVGLAIPQNMLVGAAMTLVVTPITITRWNGDSAPEIMRRSEQADSTHCAGPPEETTQTELPCPHASTPTWLLTG
PGTPPKQVTWPITTNPHNSDGSLYHEQQQKELCMIHAINNLLGGPYINPQHVLQYCRAMLQHMADRGLHNAAATWRLTHN
QNTGNFSTLAINPYLRYNVPVRTAQQRNDPAHPHVASIGSGQEIKPNATLSSVLHQLPEHARNWGFIVHLTGHAIAVRKH
KDRWYIHDSLQPKPVELGDENATWPRETGAIYTLNLRHHTEPTATHVDLRDITPPDTWMCTAHTENTEIQTTPNGTTRTT
TRVPQGQKRRKIKHLRAVQLTHQTMRTLTEPPGTWIPPQPTAHDNDHRPATNPIVAPLPPPLEEDSRERPHQKRHTGHTG
ITLPRPRDTTTGAPRTTGTRIRAKPPRTLPTDAQCNRPKPPTIMDHLRRWANKRTNPAEADHPGKTIHTTRENGNASEPN
VKRPRLSTTPVNNNTSPHPENANPSEHCNKTDPRYLHIVTHNVRGLATNFLSTLCNMQTWAADIIVLTETKTGNRTRWMK
DAVRKEPQGYRLYCSSKPRSSGKDRYSAGVAIAIGARYTRAGQVTHISPPPLLQGYLCHCKISTSASTPLHVLGIYCPEN
TLVRTTIYAHCRTVLRQAKSNGEHVALAGDFNAVLNPDDRSTGLLDTADRLHLKFVTDNTLTPVPENCSPRHPSFKQWIQ
ECCTHQSRIDDILMCPTLHASVKAETPANGNTPQAYCNVSVAGGNFDHNPVHARLPADAIRLWDAKKPAAPNNPDGDGAR
TKWKNVILPVPNSTIRAAQSKMDASLTSDILSLQEYLRPAVQEIEAGLAKHIEDPTDMTATRLMTLLRGHDSITAVNVEI
AAAMLQTTLDKGLDILLDLCPQKPPCTGKIHTKRTVSRGLKKLHREHTRLKHDYEMELRMQAAPGCQQPVCADSSTSPNG
LASNGNHAPPEGAGGLLEQLRDTIRRVGSQIRQALTTERRKSITAARRRTQHLIATRPRRAHQGIFSKDELERGLPAVKH
PVSGKICTEPESILEAVHQYFQTQAAPIGPPKTGRYRPEETPRAYPFLQSAAPDTFSLTSPKQAADHVLLSSVADPFNFN
KCVQHLARNKTPGPDGIPNELLRALPTALQSTIHDLLKVMWAQARTPKQWTESVTVLLPKAGDALLLNNKRPIALANTLY
KLWTSLVTVSIGDVAPELALFSEAQEGFLRYRNTERQIQNLLHVIEDAGLTRKDLYLLYVDFSSAFNTINHDLLLQIMYD
LGLPEDLIYVVRDLYSQARTTIRTEHGLTAPIMIERGTVQGDTLSPVLFIIFLEPLLRWLHAGGRGYKYGCLPDSLNARY
HGSSAAYADDLAVMTNSAQDLQIQCDKISLYSKWAGLHVNHKKCAVTGILHHRAWADRGLNGPTCARTLKAALDEKIKIS
DQSVPYLPPTEPYKYLGVHVTLTLNWSAQMSHVCKAVRDKGDLLQGSLASPDQCIRIIQTCIQAVVSYSFSTMAYTPNDI
RLLDAMIARAARRCYRLPTSFPTRAVLLPVEQYGLGVGSLLPIYVRMAARALVLSLNDEGRLGVVTRAMLELQCRLAADT
RMHTLKRESSFYTTLKQLTLARDHGIAVTDKGMPYNTSLNTLMTAASAVNARQDTKSETLPYRCLLPLTELGLDMHALID
KNTTQHLITTTDLQKLFPRGKVQHRHKIALNRLSLAISAQCPQAPHTKAHDPRRWSSALPLEDRRLREIPSDPPYTGLRH
KSSLPNPILAPSLDPHVRRDTPVVWSTTTEKPHHPRAEPDDMESDPPAPPSHPAEPACTGRKRTRSVHQRQQDFINNNTR
CDNSNVGTDSAAIHGVQLRDPAPQCTSYMETRRVMAALRKDTRRSVPNLGNPPGPIVQGPRPRPSRQTRRTLSIGMTPVT
GEIGTPNPVLVYLAEKGLDCTPVAPRNPRAGAGAGAARAGPNTADRDHAGDPPAPEPAGALPGTPKPPEHLTPQWWRPRW
KVARDQILEDRIPWKPGKGQAKDTTGQQQIVYDLYNDVEDIVEVLAGPITKRIVPSNVKPPKKQKIGADTTATHEQYYTV
RWKDTITPISIVGAYASMGYVPRQLLPVTGLYGTRIDRHFRRAVWEPSDIPAAQLGRLPNGPAAMARYEQTRSQSVNPLS
RYPKPKDSNLTNPQRQGRWNPPPSEQTQRARLIRANTTFETAPCNPYMDTRPTGNYRIQLGLLTREGGSTEGNTAFVYDP
RGKCVGTLTLQRLETLRMRYQHTIDTYPEVHRSLSSQGGFAEDVARLLLRYGKDPDGRETKGPPRSQATMSRKLRCTLID
ALHALDAGPVVERFSSPLNCGEEVQYYFSVHAEDQLFGANIDAFSQPFTGLSIAHPNPDPTSVKKAVMWAVAGASHTMTS
ALPTATLLIVPHSRTGPHTQLHNTPYVFQLARLSRGEACKLTSGTGTDGPTPDYKGGLDLVVVANDTAIRGLNARSMKAL
LSELEAMDATGLPRKHLRLRDMSAGTHCVGTQRPYPNKVAQVMRKMNASKPPRPRPTATVPHSDGQMLQQRLTAAFPGQV
PLRMDPHTIIWTDGSCIKSAENDGQNKLGAAAYCGPTGKTLHIDPAGEGCTNTIQRAELAAIRVALSTQRAVNITLTIAT
DSQASLDLIKRAVNDPSKLHISKHKALLMDIADLLYECAQQNITVHFLKVKSHTGLDGNDKADKGATSVARGENPATFTE
KADNAPFDKVFWLKQRDTGLYVSDLNKGLYKRLQQGTFAGYTNDTILTEKWRNTASKLDPKSSNSFLSNAKMXHWLKLQV
LKARYGLLFNAKLKKLYGRGGDGNCPICRSCGPTGPTPDSGAHILGGCPHPTMKGMYINRHNQATRTIADCVNGGHHGGG
FMIMDAGKEEDLPPYCSGTRVPKWMLPHLADEEIRRLRPDIMFIPDLPAHRTKRKRYQGPECKSKHDVYIVEVGYTSDLQ
HSDKLEQKTAQHARLTEELTKAGWTVHYTEAQIVTLGSTGTLTNTLKPLLCRLGSSAEQAQKTCLHLHRQTIEAAGTIIR
ARRVLEGTVK
>REX1-1_GA_pol#LINE/Rex-Babar 3-2828  [Gasterosteus aculeatus]
SVELLDILVKGALTFRHAVRRRRRGKRAGSLVRLRRRGSRTPLPGIFLSNVRSLCNKLDEIQLLMRRDRDFSTSSVLCFT
ETWLCGSIPDSALQLAGFQLLRADRDTELSGKTKGGGICFYFNNSWCNDVTVILQHCSPDLETFFINCKPFYSPREFASF
ILVGVYMPPAGNVHEAQRTLADQIRRVERTNPDSLVIVLGDFNKGNLTHELPKYRQFIKCPTREENTLDHCYTTVSRAYH
AVPRAALGHSDHVMVHLIPAYRQKLKLCKPAVREFKKWTSEALEDLRACFDCTDWDVFRTATDSLDEFTEAVTSYIGFCE
DSCVPSCTRVSYNNDKPWFTAELRTLRLQKDQAFRSGDKDLYTEAKYKFSKAVRDAKRLYSEKLQQQFSASDSASVWRGL
KHLTNYKPKTPHSMNDLRLADELNEFYCRFERQCPDPIPHSSTNLLQSPSPPSPSPSGAHASSSISPSPPPPATTLSILE
RDVNRLFRRLNPRKAAGPDSVSPHSLKHCADQLSPVFTDIFNTSLETCHVPACFKASTIIPVPKKPRITGLNDYRPVALT
SVVMKSFERLVLTHLKSLTDPLLDPLQFAYRANRSVDDAVNMALHYILQHLDSPGTYARILFVDFSSAFNTIIPSLLQDK
LSQLHVPDSTCKWITDFLSDRKQHVKLGKHVSASRTISTGSPQGCVLSPLLFSLYTNSCTSSHQSVKLLKFADDTTLIGL
ISGGDESAYRWESDHLVSWCSQNNLELNALKTVEMVVDFRRNRAPPSPITLCDSPVTIVDSFRFLGSIITQDLKWELNIS
SITKKAQQRLFFLRQLKKFNLPKTMMVHFYTAIIESILCSSITVWYAAATAKDKGRLQRVIRSAERVIGCNLPSLQDLFA
SRSLKRAKKIAADPSHPGQKLFVPLPSGRRLRSIRTKTSRHTNSFFPSAVGLINRARSPTA
>RTE-1_Mad_pol#LINE/RTE-BovB 407-3262  [Malus x domestica]
MRLGTWNIGTLTGKSMEVVEVMVRRRINIMCLQETKWVGSKAKDLENSGFKLWYSGTNRTRNGVGIIVDKTLVQDVVDVK
RVGDRIMAIKIVIGQELINVISAYAPQVGLDTSSKEKFWEDLGDLVQGIAQTEKLFIGGDLNGHVGRETGNYGGFHGGHG
FGERNEDGEAILDFAMAYDLFLANTFFKKREEHVITYKSGSSKTQIDFLLMRKGDRITCKDCKVIPGESVANQHRLLVMD
VHIKRVRQKNKTWKCPRTRWWNLKEEKQAIFKEKVITQCVWDREGEASQMWDSMASCIRKVAKEVLGESKGFAPHQKESW
WWNEEVQTKVKAKKECCKALYKERTDENGERYRKAKQEAKKAVREAKLAAYDDMYKRLDTKEGELDIYKLARAREKKTRD
LNQVRCIKDEDGKVLATENAVKDRWRGYFHNLFNEGHEMSASLGELSNSEECRNYSFYRRIRKEEVVVALKKMKHRKAIG
PDDIPIEVWKLLGETGITWLTDLFNRILKTKKMPNEWRTSTLVPIYKNKGDVQNCMNYRGIKLMSHTMKLWERVIEHRLR
QETRVSDNQFGFMPGRSTMEAIYLLRRLMERYRDGKKDLHMVFIDLEKAYDRVPRDILWRILEKKGVRVAYIQAIKDMYE
GAKTAVRTHEGQTESFPITVGLHQGSSLSPYLFALVMDELTGHIQDDIPWCMLFADDIVLIDETQEGVNAKLNLWREVLE
SKGLRLSRSKTEYMECKFSANGGQNELGVRIGDQEIPKSDRFRYLGSILQKNGELDGDLNHRIQAGWMKWKSASGVLCDR
RMPLKLKGKFYRTAIRPAMLYGTECWAVKHQHVHKMGVAEMRMLRWMCGHTRKDKIRNEDIRGKVGVAEIEGKMRENRLR
WFGHVQRRPTDAPIRRCDYGTEVQGRRGRGRPRKTLEETLRKDLEYLDLTKDMTQDRAQWRSKIHIADPTQ
>RTE-1_DYa_pol#LINE/RTE-BovB 8-2342 via tfasty with RTE-1_CQ_pol, 2 frameshifts and 2 stopcodons. [Drosophila yakuba]
SARRGKVTLTSYCXYSHTSTTWTSPSFDHICISRKWRHSLLDVRNKRGASIDSDHELVIGELEIKLNRILLKEHxxQPTP
TSAPLNLHLLSDSTLRTRMTSTLREQLIPLEDHPWEHTCRQLRTAAEQIIGLQQRGRADWISEGTWDLIRRRNNLKPLAD
QLTQNRDEYRELCRAVKRAARKDKRALLDRLATDAERAAGENNMRSLYQQIARIAGTHHRRNQPVRDLEGNLLSNDDAQI
RRWRQHFMGISHTTSPNVATDYRSIAPPSGNTRIPSTPPHVREIVNAIKKLKRNRAAGEDNIPAELLQVDTQLMADTLHP
HFARIWEGETVPDSWKSGIIVKLPKKGDLSDCNNWRGITLLNTSYKILATLLNERLQEKIEPTIRDEQAGFRPHRSCVDQ
ANTLRIITEQAVEWRAPLYLLFIDFKKAFDSVERAAIWRSLARKGVPANLIAIIKSMYDDANLAVLHNGITSEPFQTNTG
IRQGCPLSPLLFNIVVDELMSEVCSSKRGITWSLTRHLEDLDYADDICLISHRLGDIQRKSDNLVRIASSVGLEINVAKT
KAMRFNHSNQGNIIIHGNPIEFVNSFPYLGTIISNNGGVDDDVSSRLGKARSAFGRLYRIWRNREISRRTKLRIYNACVK
SILLYGSETWLATKKVTQKLQVFSNKCLRIICGIFWPNRIANTELWRVTSEPPIHTQIRKKKWMWIGHALRRNPSSIVRM
ALDWNPQGSRRVGRPRATWRRTAQQELAQINITWENAKQTAQNRVRWKALVEALSSREE
>RTE-1_STu_pol#LINE/RTE-BovB 887-3736  [Solanum tuberosum]
VRVGSWNIGSLTGKSIELVKILKKRKINIACVQETRWVGSKARDVDGFKLWYSGGSRDRNGVGILVDGDLREQVVEVRRI
NDRLMTIKLVIGGCTLSVISAYAPQVGLDEEAKKXFYEDLDEVVRGIPNTEKIVIGGDFNGHIGATSSGFDDVHGGFGFG
ERNGGGTSLLDFAKAFELVIANSCFPKKENHLVTFRSPVAKTQIDYLLLRKGDRGLFKDCKVIPSENLTTQHKLLVMDLE
IKRDRRKKMVPDRPRIKWGGLTPALSREMGEELMGMGAWSGSGDADNMWNKAASCIREVASKVLGVSRGKFGGHKGDWWW
NGEVQGKVEAKKAAYTKLAECVDEEEKRTLKKVYKTTKTEAKLAVSKAKTAAFERLYVELGDKGGDKKLYRLAKARERKA
RDLDQVKCIKDEEGKVLVEETSIKQRWRRYFHKLLNEEGEGDIVLGDLAHSERLRDFGYCRCFRTEEVIRAISRMSRGRA
TGPDEIPVEFWKSTDKAGIEWLTGLFNVIFKTAKMPDEWRWSTMVPLYKNKGDIQNCNNYRGIKLLSHTMKIWERVVEMR
VRRGVSISENQFGFMPGRSTTEAIHLMRRLVEKYRERKRDLHMVFIDLEKAYDKVPRNVLWRCLEAKGVPMIYIRAIKDM
YGGAKTRVRTVGGDSEHFPVEMGLHQGSVLSPFLFALVMDELTRSIQEKVPWCMLFADDIVLIDETRDRVNARLEVWRQT
LESKGFRLSRTKTEYLGCKFSDALDEADVEVRLATQIIPKKESFKYLGSVIQGSGDIDDDVTHRIGAAWMKWRLASGVLC
DKKIPPKLKGKFYRVVVRPALLYGAECWPVKNSHVQKMHVAEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREAR
LRWFGHVKRRGADAPVRRCEGLVVEGTRRGRGRPKKYWGEVIRQDLAQLHITEDMTLDRKEWRSRIKVEG
>RTE-4_AMi_pol#LINE/RTE-BovB 644-3850[Crocodylidae]
MKTPTPTSKGGEKRKPLHLACWNIRTMLDSEDSSHPQRRSALVAHELARLDIDIAALSEVRLPEQGSLIEHSAGYTLYWS
GKLQVERRLSGVGFMIKNSIASRLQSLPIGLSDCIMSLCLPLRDQQHATIISVYAPTLQADTVDKLKFYTDLRDLIQKIP
SKDRIVIMGDFNARVGGDYLAWKGVLGRHGLGNCNDNGRLLLELCAETQMAITNTQFQQKNRYKTTWMHPRSRHWHLIDY
ILVRQRDLGDVLHTRVMPSADCHTDHRLVRSKLSFHFKPQPKHRGNPPKKFDVSKLQNQSCQQKFQKTLQSKLESQAHTA
DTSPDGLWEHIKSVVLETTKETVGLSTKRNRDWFDENDKDIQALLTKKRTTHQALLAQPTSRERKAAYRQACNTLQRKLR
DIQNEWWTNLAERTQLYADNGDTRSFYEALKSAYGPTFLIQSPLRSSDGRTLHIDKDSVMDRWSEHFQTLFSAECTVHES
AINRIKQLPVKEELDERPTLEETFTAIDQIKSNKAPGIDGIPPEALKYGGPALHSKLHELFIACWEQGKIPQDLRDAVII
TLYKNKGDKSDCSNYRGITLLSIAGKILARILLNRLVPAIAEEVLPESQCGFRANRGTIDMVFVLRQIQEKCREQNKGLY
ITFIDLTKAFDTVSRNGLWKILEKLGCPPKFLTMVRQLHDSQRGQVKYNSSLSGPFLISSGVKQGCVLAPTLFTIFFAMM
LQQASDNLGEGEEGVYIRFRADGNLFNLRRLQAYTKTSQQLIRELLFADDCALVAHTQHDLQHMTTCFATAAQLFGLTIS
LRKTEVLHQPAPRQAYVPPKMTIEGTELNAVKQFTYLGSVISYDATIDKEVDNRLSKASSAFGRLYKRVWNSHSLRAQTK
VKVYRAVVISTLLYGAESWVLYRRHVHLLERFHQRCLRTILKIRWQDYVTNVEVLQRANTTSIEAILLQTQLRWAGHVAR
MDDNRLPKAVLYGELTTGKRDRGAPRKRFKDTLKRSFSACGIDHKLWETQAADRDAWRLQIKKATAFFECQRRASIEEKR
RGGKIHPHLAAISHTRVTVAAGFASLQLD
>RTE-3B_SP_pol#LINE/RTE-BovB 2-3072 Nearly complete, via tfasty with BovB_pol, 4 frameshifts and 1 stopcodon.  [Strongylocentrotus purpuratus]
GQRRLSELVFTWIYSWSPHCGEEGNGKPLHYSSQDIPWKVTIQSQRETAxREPLEIEVPRSVGLPMCDRWDPIVIQHLSA
TVTSCCIGTWNVRTLYQKGKLDNVVQEMNRMRINILGISETRWTGSGEFTVEKHRMIYSGGIRHERGVGVLLDPFTANCV
LGFWAVSDRVLLVKLQGKPFNMAIIVVYAPTAESTDEDIDxFYEQXKSQCKSNEIVIAMGDMNAKVGRGRYGGTVGPYGI
GDRNERGNRWVEWCEAKGMVIVNTWFKEHPRRIYTWKSPGDRARNQIDYITINERFKRGVKQAKTYPGADCRSDHIPVVA
TLQCKLKKMTKAKSIQKVDFEQLQNRDVRLRYTVKVQNRFDSLTDQGEEVTWESMRDILVETAEETLPKKEKKSKQRWMT
EEILSKMSKRQKIKDRDGIEYRELDREIHDHCTKAKEEWLNKQCAEIERSFNANDPRVFKKVNDLSGKKLRSSKLGCIKA
KDGSVLVEKEEILNRWTEYIGELFDDVRKEPPHCAGSIEGPRILLSEVRSAISMMKRNKAAGPDGVVMEMVEALENYGVM
KLTEVINKIYDDGKFPDDLCKSIFITLPKKPGAVECGQHRIISLMSHITKIILRVLLQRARNHLTPEISNVQFGFVKDAG
TRNAVFVLRSIAERAVEMQKDVFLCFIDYTKAFDKVRHDQLFEDLTKIGLDTKDVKLLQNLYWEQTACVRVETELSDYIN
IKRGVRQGCVMSPDLFNYYSELILRNLEQERGLKVGGHNITNIRYADDTILIAESEKDLQRLLDVVVRESDKRGLSLNYK
KTECMVISKKGGIPCSLKINNNQIKQATSVNYLGTTITDDARGEQEIKRRIALAKSTFSKLENILKNKKLKMKTRLRVLN
CYVYPVLMYGCEAWTLTSDLRKRLESCEVWFLRRMLRISWTERVSNDEVFAMAGTRRKLLNNIRGRQLSFLGHVIRKNGL
ENLALTGRIEGRRSRGRRRILWMSSLRSGISECGIDLGENELLHRIWDRELWHSMVANVSGYGT
>RTE-1_DAn_pol#LINE/RTE-BovB 363-3326  [Drosophila ananassae]
MITRTNTSTIEPNDTPKPMTTLRISKRTRIGQWNVRTLMEPSRLAQLENEMDRLQIAIAGISEMRWSGKGATTTSQSNLV
LHSGSSDGGRNGVGIYVSRKFKQTLISWNPVSDRIITARFRCNARHITIVQCYAPTEDASDDIKDDFYNALISSLNKVIR
GDIKILMGDFNAKVGPNNTGLESTMGRHGIGTRSDNGDRLIDLCQTFQLVIGGTVFPHREVHKYTWTSPDGNTRNQIDHL
CISKRWRRSLRDVRNRRGASIDSDHELVVGEISIKLQRKHTATRATRRPTPLNIHRLRDTTLSSRMATALREQLTPQRNC
PWEQTCRLLRSTAEEMLGTRQRSCSEWISADTWERELISRRNRLKSIADHDGRAREEHRNLCKLVKKSARRDKRAVLDSI
AENAERAANTNNMRSLYQLIGKLSGSYQRQTQPIRDSDGRLLVDDDAQLERWRQHFMEISCTEQPGNTQPDFRSIVPNSS
VRIPPTPPSIREIRDAIRKLKSNKAAGEDGISAELLQIDPQLMAETLHPHFKDIWESERVPDAWKRGVIVKLPKKGDLSD
CNNWRGITLLNTSYKILATLLNERLMEKLEPTIRDEQGGFRPLRSCVDQANTLRTITEQAVEWRSPLYLLFIDFQKAFDS
IDRAAIWRALARKGVPINIVNIVRAMYDDADLAVLHNGKISAPFQTNTGVKQGCPLSPLLFNLVIDEIMREVSMHRRGIT
WSFTQHLEDLDYADDICLLSHRLIDIQAKASDLEKRANAVGLSINASKTKAMRFNNSNQGSITISGKTVDFVDHFTYLGT
IISSSGGVEKDVESRLCKARSAFGRLHRIWRNQQISRRTKLRIFNACVKSILLYGAETWLTSQRMMTKLQSFINKCLRII
CGIFWPNRISNSDLWRNTGEAPIHHQIKKKKWKWIGHALRKKTDSIVRKALDWNPQGSRRVGRPKLTWRRTIIQELSRSN
ITWDYAKQTAPNRVRFKVLVNALSSQAE
>REX1-3_XT_pol#LINE/Rex-Babar 9-2972  [Xenopus (silurana) tropicalis]
MAARTHREAQCLSSFCSFAVFYLLFSGLFVKNSSAFTSYTRQELLDIGLHIPDSLINNLRLVPEIVRTSEAAHSNWPGGS
ARRRRRDRKQRRGKRGGLRAKLRLTPHRLSLPSIFLANVRSLMNKMDEIRLRIIHSKRLWNCNVIIFTETWLNSDISDNA
IALAEHHTFRADRTVNDSGKTRGGGLCIYVNNAWCTNSVIIGRHCSVNLEFLMVKCRPFYLPREFTSTIITATYIPPDAD
AKLAMNELHAAISKQQTSHPEAAFIVAGDFNHSNLKTVLPKFHQNIFCHTRGNKTLDHVYTNMAEAYNVDTLPHLGQSDH
LSLFLTPKYLPLINRVQPSVKTIKVWPAGVDFTLQDRFLHTDWSVFATQATCGSHTNLDSYTSSVLDYINTTIDSVTTQK
QITTYPNQKPWMNKEVRLLLKARNTAFRSGDAQAYSTSRANLKRGIKKAKHCYKLKLEEHFLHSDPRRMWQGIQAISNYK
SSHFTPTATNVSFLNELNDFYACFEKDNKENVTKITASPNHSVITLTSSDVYNVLSRINVHKAAGPDGIPGRILRACAEQ
LAGVFTDIFNMSLAQAIVPACFKSTSIVPVPKHSSPTCLNDYRPVALTPIIMKCFERLVLTHLKDSFQSSLDPHQFAYRA
NRSTDDAISIALHSVLTHLDKTNTYARLLFVDFSSAFNTVLPSKLITKLRDLDINSSLCNWIMDFLTNRPQHVRSGHICS
TTSTLNTGVPQGCVLSPFLYSLFTHDCRPVYGSNNIIKFADDTTVIGLISNNDESAYREEIKHLATWCTDNNLLLNTNKT
KELIVDFRKGRRGSHEPIHINGMVVEPVSSFKFLGTHISENLSWATNISSLVKKAHQRLFFLRTLKKNQLSSTILVNFYR
CTIESILTNCVTVWYGSCSVAERKALQRVVKTAQRIIGTPLPAIEDIQKKHCVRRARSILKDYSHPAHKLFSLLPSGRRF
RCLRSRTNRLRNSFFHRAVSLLNSAPH
>Rex1-2_PM_pol#LINE/Rex-Babar 61-2820  [Petromyzon marinus]
EDGADDGSLSRSARPVLSCFVCQFSVLPIFSEFPNRDELLXIRETTPVDLFXTFLLPAAELVGISSQXRARLCSSSERRP
RGKRSGALVRLRRRGIRTVLPSFFLSNVRSLCNKMDELQLLMVKNRDFLSSSVLCFTETWLCDLIPDTALQLAGFHLVRS
DRDIALSGKTKGGGICFYINSGWCVDVTVILQHCSPLLESFFINCKPFYSPREFASLILVGVYLPPXPQVKEAQRMLADQ
ILSVERANPDSLVIVLGDFNKGNLSHELPKYIQFIKCPTREGNTLDHCYTTVSRAYHAVPRAALGHSDHAMVHLIPAYRQ
KLKLCKPAVRTSKQWTSEAVEDLRACLDCTDWDMFTTATNSLDELTEAVTSYISFCEDCCIPTRTRVNFNNNKPWFSAKL
RRLRLEKEEAFRSGDRDRFKESKNRFSKAVREAKRLYSERLKHQFSALSVWRGLRQITNYKPRAPHTTNDSRLANDLNEF
SPATLRHCADQLSPVFTNIFNTSLETCHVPACLKSSTIIPVPKKLRPTGLNDYRPVALTSVVMKSFERLVLAHLKAITDP
LLDPLQFAYRANRSVDDAVNMALHFTLQHLDSPASYARILFVDFSSAFNTIIPALLQDKLFQLNVPDSTCRWITDFLSDR
KQCVKLGTQVSDSRSISTGTPQGCVLSPLLFSLYTNSCTSNHLSVKLLKFADDTTLIGLISGGDESDYRWEADNLVTWCS
QNNLELNALKTVEMVVDFRKNTAPLTPITLCDSPVKTVESFRFLGTILSRDLKWELNISSLTKRAQQRMYFLRQLKKFNL
PKTMMVXFYTAIIESILTSSITVWYAAATAKDKSRLQRIIHTAEKVIACNLPTLEDLHTXRTMRRARKIVADSSHPGHSL
FQLLPSGRRLRSIRTKTSRHKNSFFPSAAGLLNKAKGLH
>REX1-9_XT_pol#LINE/Rex-Babar 1-2703  [Xenopus (silurana) tropicalis]
EVPLSWIPGTRKRRRRGRRSGILARLRRRCNRPPLPSLLLANVQSLENKLCELRARISFQREMRDCCLTETWLSDKIPDS
AIQLTGFSVHRADRSRELTGKSKGGGVCFMINNSWCDHANVHPIKSFCSQDLEFLMLMCRPFWLPREFSAVIITAVYIPP
LADIDRAHGELYSAISSQETSHPEAMFITTGDFNKANLRKVLPKLHQHIQFNTRGERLLDHCYTSFRNAYKALPRAPFGQ
SDHRSILLLPAYRQKLKQVAPTLREVHCWSDQSDSMLQDCFDHVDWEMFRTAAVSIDEYADSVCGFIRKCVDDVVPSKIV
KIYPNQKPWINSDVRMALAARNSAFASANTSEYKHATYQLRKIIKSVKCEYRDKVEQQFDDPRRMWQGLNTIADFRGKTS
TPQTTASLCEDLNVFYARFDTTNTTRLVSDRSMNDVSAHTVSEEEVRKCFRQVNARKAAGPDGIPGRVLKTCAAQLAGVF
MNIFNLSLSLSVVPACFKTATIIPVPKYSTIKSLNDWRPVALTPIVSKCFERLVRNFICSALPDSLDPLQFAYRHNRSTD
DAIALTLHTALTHLEKKDTYVRMLLVDYSSAFNTIVPSKLDRKLQDLGLSNSLCSWILNFLSDRRQMVRLGNITSSSVIM
NTGAPQGCVLSPLLYSLYTYDCTATSSSNIVVKFADDTTVVGLITNGDETAYREEVNALTHWCQENHLSLNVGKTKELIV
DFRRCRGAHSPIIINGAAVERVNSFRFLGVHIADDLTWSVHIDKTVKKAQQRLFFLRRLKRFGMSPRILRSFYRCAIESI
LTGSITTWYGNSTVYNRKALQRVVRCAERIIGGELPSLHDIYRKRCLRKARRIIKDSSHPSNKLFKLLPSGRRYGSIQSR
TSRLRDSFYHQAIRLLNTDQ
>Plat_RTE1_pol#LINE/RTE-BovB 860-3769 [Ornithorhynchus]
MTLRLPLKQKRFATIISAYAPTMTNCDEEKERFYKDLDKLIAGVPTSDKLIVMGDFNARVGSDAHTWKKVIGPHGIGKLN
SNGLLLLSECAKHHLAITNTIFRLPNKRKTSWMHPRSKQWHLIDYIIARQRDLKDVRITAAVRGAECWTDHRLIRSKLTL
XXEPLRRKVASKPPRQLNVKLLENEDIRKELRSNITAALLKQEXQTTIPNVXSEWAFLRDAVFQAAVETLGTAKRSHQDW
FDANDSEIKGLLAAKHLLHQQHLAAPENSDKSEAFRNLRRDMQIKLRNMRDRWWDAKAEEIQGYADRHETKNFYTSLKTL
YGPVRAITVPLKSEDGSSLITDKEGILKRRQXHFNVLLNTPSTIEDEALQNIENLPTCEDMALVPTIGEVTAAVRAMKNG
KAPGPDGIPAEIYKHGGDTLLKHLHKLFLNIWTTEEMPQDLKDATIITIFKKKGERSDCGNYRGISLLSIAGKILARVLL
DRLLKNIVDRTLPESQCGFRPQRGTADVIFAARQIQEKCREQHQDLYTVFIDLTKAFDTISRSGLWKLLSKFGCPEKFIK
ILRLLHDGVAGRVRAEGALSDPFPVANGVKQGCVVGPVLFNLFYAAMLEDATRDLDAGVRIRFRTSGKLFQLNRLRASSK
VLETVIQELLYADDCALEAHTQEDTQMIVNRFAESARRYGLTISLKKTEVMYQPAPGKPYTQPKIYIGNTELNAVTEFCY
LGSTLTNDATIDKEVENRIKKASTSFGRLSNRVWRQRGIRLQTKLKVYRAVVLSNLLYGCETWTPHRRHIRLLEQFHQRH
LRAILNIKWQDKITNNEVLERSQSPSIEAMLTSTQLRWVGHVRRMSDSRIPKQLLYGELKLGNRKQGGQRKRFKDTVKQS
LRQCCIPAENWESIAEDRPAWRTAIKKGAALFEQKLRKERETRRQKRKQRQALQTSNTTTQQGTAFLCAQCGRDCGSRIG
LFSHTRTHR
>BovB_pol#LINE/RTE-BovB 691-3834 RTE-9_SP in sea urchin is 95% identical [Ruminantia]
MKLSHARGATQDGRVMVERSDRMWSTGEGNGKPLQYSCLENPMNSMKRQNDRILKEELPRSVGAQYATGDQWRNNSRKNE
GMEPKQKQYPAVDVTGDRSKVRCCKEQYCIGTWNVRSMNQGKLEVVKQEMARVNVDILGISELKWTGMGEFNSDDHYIYY
CGQESLRRNGVAIMVNKRVRNAVLGCNLKNDRMISVRFQGKPFNITVIQVYAPTSNAEEAEVERFYEDLQDLLELTPKKD
VLFIIGDWNAKVGSQETPGVTGKFGLGIRNEAGQRLIEFCQENALVIANTLFQQHKRRLYTWTSPDGQHRNQIDYILCSQ
RWRSSIQSAKTRPGADCGSDHELLIAKFRLKLKKVGKTTRPFRYDLNQIPYDYTVEVRNRFKGLDLIDRVPDELWNEVRD
IVQETGIKTIPMEKKCKKAKWLSGEALQIAVKRREAKSKGEKERYKHLNAEFQRIARRDKKAFFSDQCKEIEENNRMGKT
RDLFKKIRDTKGTFHAKMGSIKDRNGMDLTEAEDIKKRWQEYTEELYKKDLHDPDNHDGVITDLEPDILECEVKWALESI
TTNKASGGDGIPVELFQILKDDAVKVLRSICQQIWKTQQWPQDWKRSVFIPIPKKGNAKECSNYRTIALISHASKVMLKI
LQARLQQYVNRELPDVQAGFRKGRGTRDQIANIRWIMEKAREFQKNIYFCFIDYAKAFDCVDHNKLWKILKEMGIPDHLT
CLLRNLYAGQEATVRTGHGTTDWFQIGKGVRQGCILSPCLFNLYAEYIMRNAGLEETQAGIKIAGRNINNLRYADDTTLM
AESEEELKSLLMKVKVESEKVGLKLNIQKTKIMASGPITSWEIDGETVETVSDFIFLGSKITADGDCSHEIKRRLLLGRK
VMTNLDSIFKSRDITLPTKVRLVKAMVFPVVMYGCESWTVKKAERRRIDAFELWCWRRLLRVPWTARRSNQSILKEISPG
ISLEGMMLKLKLQYFGHLMRRVDSLEKTLMLGGIGGRRRRGRQRMRWLDGITDSMDVSLSELRELVMDREAWRAAIHGVA
KSRTRLSD
>R1_DWi_pol#LINE/R1 1902-5024 [Drosophila willistoni]
MFSFIQANCGRGRVACIDIGVRMRGFGHSFALLQEPHTDLDGRIIGFPAGMKIFGSRIFEGHRRNSAVIIDDPDAICLPV
ESLITEAGVCVRVTGKFGSIYLTSLYCHAHAELMGAFQYMDAILLLASSTPVILCLDANAVSPMWFCKRYDSYRGQPNYR
RGEQLEDWILASRAGVVNRFSEVYTFDNRRGQSDIDVTIVSEAASAWAAYDWSVDEWEMSDHNIITVVVTPSPDTVESTY
APVPSWKLRNANWRLFDSELVEEIREHLPLEHIRMSPLDSSVSALRLAVQSTCDRVLGRRTSRAAGKVKWWSTELSTKRH
EVRRLRRRLQDARRRGNESAQFLATHLRTAVREFKKLILKTKEDHWRNFVGDHRDDPWGHAYKICRGRKRSTELGCLRED
GRPVVTWHDCASLLLRNFFPVAAASDDIVIPSGATPVLEAFEIGVCVARLKSRRSPGLDGITGGICKAVWRAIPEHITAL
LSRCVAEGYFPLEWKCPRVVALLKGPDKERSDPASYRGICLLPVFGKVLEGIMVNRMKEVLPEGNRWQFGFRPGRCVEDA
WHHVKASVAASQAVYVLGLFVDFKGAFDNVEWSAVMRRLIDAGCQEASLWRSFFSGRKARMTSRFGEVDVEVTRGCPQGS
ISGPFIWNTMMDVLLQRLEPLCVFSAYADDLLVLVEGRSRAELERRGKELMSVVGAWGAEVGVSISTSKTAMMLLKGRLA
ASRSPFVEFAGAGLRYVTQYRYLGITVGERLSFQPHIAGLRGKLAGVSGALSRVLRVDWGLSPRSRRTVYAGLMVPCALF
GASVWYSAVKSTMVARRHLCSCQRVMLLGCLPVCRTVSTVALQVLAGAPPLDLVARQLAIRYKVKHSHPLEEGDWLFGLD
VANLDRKQMKAMLDERMCCEWQRRWDDDEHGRPTHEFIPDACFVFSRKDFGFGLHAGFLLTGHGSLNAFLYERSLSRTPT
CQCGALCEDWQHVLVACPLYTDLRDLDGLGVRREDTRWDFSRVLDTPEQLQMLELFARAAFKRRRRMTQDQPVPGRTGQN
W
>R1_DVi_gag#LINE/R1 269-1648 [Drosophila virilis]
MPPRKKKPAEKGAFENCRMTSEDEVTLSESSSNSEVRRRSKQRLRKATSESAVSSVGAREGSAVPAGAADGSPGAAGASV
EERVFAVPHAVSVLDVSEPAVEGPSTSAAALRKRKGTAVEQMKGITGALLQLALKERATGSLICKLVDYTGQYEQLLFAL
VAQNERLQGRLEAVCGGAGVSHELHVPAGQARAPSVNAARGGPRSAVPSTPEMPRPVETWSLVVRSKAAGKTAKDVVEQV
VKEVGPSLGVRIHEVKPLRDGGALIRTPSVAEREKIVENTKFNEVGLEVCVNDKLGPKVVVQGVHSQITPDEFMGDLYEM
NLKDKMSLEAFKKGVRMTSKPWAAGGNVAVNIVLEGAVVAMQSLLEIGRCYIKWFSFRVRSFDLVPGCYRCLGFDHKVAE
CRAKEDVCRRCGQMGHRVAQCSNALNCRNCSFKGKPSGHLMMSLACPIYGAIVARANARH
>R1_Ele8_gag#LINE/R1 16-1428  [Aedes aegypti]
MENISDNTVMEVEAAEGENANAFARSGKLQRSPVAQQETPASSSRALQGENSRLQAGLGFQSPSFTPKSSNSICQEGLTG
NSKLMEAKKKVNELYEYMKDRTNVHHKIRNLVTSIKSAINAAENEQKALKMRAEAAEKALQNAKEQTVADTPKTPKAHAN
KPSKKRDRDSPGEEAGSKKQKNEQGNYLLNGAENDEEWQTVRSQKNRGKKHGEGREKKKEGTKKXTSRPRREWSKGDAIL
VKANDQTTYAAILRKVREDPKLKDLGENVVRTRRTQRGEMLFELKNDPVIKSSAYQELIAESLANEASVKALTQEAVVEC
RYLDEITSNDDLQQELRSQCDIGDVAMTIRLSKSYDGTQLATIRLPVAAANKLVEKEKVKIGWSVCPLRLVSRAERPPMR
CFKCMDFGHQAAICNGPDRSELCRKCGEKGHFGKDCTKRPKCLLCKPEEGNAHVTGGFKCPAYKKAIASRQ
>R6Ag1_pol#LINE/R1 gi|28569870|dbj|BAC57910.1| reverse transcriptase [Anopheles genus]
MVRLLQHNQNHSYAAFQLMWQTIREESADIVLIADPYLATTNVKVLRNDDNTAAVVVNADLPVKVVSKALKGLMVVDIGD
MRVVSVYAPPRFSMEEFQIMLDNTVMAVTGIHKFVIGGDFNAWSASWNNQLGERGETQKRRGELVLSTFAQIDAILLNDG
STPTYVGPGRTSVVDLTFASRTVARSFKWEVLSSYMNSDHRAIRIDLETQSVRNLSRPITGWSIKYFSKDIFEVMMQAAV
DTEVTTSEDLMRILVTACNATMTKRKRYTPNKSAFWWTLEIEALRKECKHRDRLAQRAFHTDLYSTFRDEFKVARNALKR
LIKHTRQRKWKEFLGTANNASFGIVYHTFKKVAEGSIGPRTMTLDEFREVVSELFPTHPNTVWPDYRIDQPREFERITND
EILAVARRLPNKKAPGPDGIPNEALKVGMLTATDAFCRVYQGCLENAKFPDEWKRQRLVLIPKPNKPPGEPGSVRPICLL
DGAGKGLERIIVQRLNAHIEEVNGLSDDQFGFRSRRSTVDAIQRVVDIVSVARSRNRYSGRYCAVVTLDVTNAFNSASWL
AIANALQRINTPKYLYDIIGDYFRNRVLMYDTTDGPAEIAVTSGVPQGSVLGPTLWNLMYDGVLRVAMVEGARIIGYADD
IVLLVEGNCVDDIEILVSSQIRIIDRWMTDNGLKIAPTKTEFIMVSSHQRIQHGAIRVGDHVVHSSRTLKYLGMVLDDRL
EYTSHIRYAVERATKLWTTLVRMMPNKAGPSSNVRRVIALTVVAKVRYASPIWCHTLRFANRRQWLRRFYRPVVQRVISS
FRTTSHDAVCVLAGMIPLHLLLDEDSRTFHRRRAENIAGSVARNMERVTTMERWQREWDESVHGRWTYRLIPDVNRWISR
RFGGVDFFLSQFLSSHGFYAYQLHRMQLTGSPLCDACEEPEDAEHTIFHCVRHRELIIRLQHQVDEELTPENIIEVMSAN
RYNWSMVHQAVRTIMIRQQHRRHVIERGERRALLANIQLALQSSDSDDE
>R1_Ele9_pol#LINE/R1 2052-5054 via tfasty with R1_Ele4_pol, 1 stopcodon. [Aedes aegypti]
MSGLxTSVCKHVTVEIAQINLNHCEVAQHLLGQSVAEMKCDVAIISEPYRIPPTDGNWVADTSKTAAIWTVGRYPFQEVV
ECAEEGFVIAKVDGVYICSCYAPPRWPLEEFNRMLDRLTEELTDRRPFVIAGDFNAWAIEWGSRLTNARGCSLLEALAKL
DVHLANEGTISTFRREGRESIIDLTFCSPGLARHMNWRVCEEYTGSDHQIIRYRIGGRFQPVYCESQTDVRRWKMADFKK
DVFVEALRLEHITLNLSADELTAALTRACDVTMPRVGKPANGRRPAYWWNSTIADLRGSCLRARRRMQRACNNAEREERR
LIYRAARSALKSEIRLSKKACLQELCDKANANPWGDAYRVAMARLKGPTMPPEKCPERMKVIIDGLFPQHDATTWPPTPY
GVQDGDYEESRVTNEELIGVAKALDTKKAPGPDGIPNLALKTAILENPDMFRTTLQNCIDDGSFPDSWKRQKLVLLPKPG
KPLGESSAYRPICLLDTSSKLLERIILNRLTKHAENENGLSNMQFGFRKGRSTVDAIQTVVETMEAAQKQKRRGNRYCAV
ITLDVKNAFNCASWKAIADSLHSMRIPEYICRILKSYFQNRLLIYETDQGVKSIQITAGVPQGSILGPTLWNIMYDGVLK
LNLPRGVKIVGFADDVVLLVVGESREEVEVLATETIETVEDWMRDKKLAIAHHKTEVVMISNRKVVQQAKITVGDCIIDS
KREVKHLGVMIDDRLNFNKHIDYVCEKAAKAIGALSRIMANDSAIKSSKKRLLASVTTSIIRYAGPAWVTALKTERNRSR
LSSTYRLMAMRVSSSYRTISSEAVCVIAGMIPISLLLEEDRECYTDRHTRGVRERERADTIRKWQHQWDQATTGRWTHRL
IPSLSMWIRRPYGEVNFHLTQFLSGHGCFRQYLHRFGHTSSASCPECSNTEETAEHIFFACPRFGLEREEMKAILGEDVN
VDNVIQRMCNDADKWNAVNRIVTQIMSALQRKWRVEQRHEA
>R1_DSe_gag#LINE/R1 408-1790 R1_DEr_gag, R1_DSi_gag and R1_DYa_gag near-identical. [Drosophila sechellia]
MPMESDSSASALSGSSASMKSRRGRRRSHLASKSSAPTQAKLVALASNGVPEPVGVLEEPFSSLEDARAATENAAIDAAP
PHAAATAADPTAAPAADHTAASAVFTAAKIVATTATAATAAARAGQAAMMAELSATQRMVRSSFRRLGEVDTEELSYAIS
RYDELVLALMLRCGELETRLAMPPPPPPSLNLLKNTAANAPQMQQVAPIAAPRTTKVRETWSAVVKCDDPALSGKDIAEK
VRTMVAPSLGVRVHEVRELRRGGGAIIRTPSVGELQKVVASKRFAEVGLNVARNAAEKPKVVVYDVDTAIGPEEFMKELH
ENNFDSEMNLAQFKKSVHLVTKAWSVADGATVNVTLEVDDRAMAKLDVGRVYIKWFSFRCRSQVRTYACHRCVGFDHKVS
ECRQKDSVCRQCGQQGHTAAKCQNPVDCRNCRHRGQPSGHYMLSSVCPIYGALLARVQARH
>R1-6_DWi_gag#LINE/R1 225-1826  [Drosophila willistoni]
MQKIHGKMVGKTSTTPGGSHSCGNPPMVQAMAGARILEAPTTVITTTTAPVANLADAADIATSSSSSSSKKHGLCTNGGN
PFAKGSKIARTPPQALHSAPPAIRGLLVSAGCEEETPKRAREASPCNTESGTTPKKLKGPPQAPNILMAELGKILDEIID
GSVNKKAPPTRNTTQWMKEAHLKMKSIHLQVMEQMQEYPVKAGPCLACATRNSAAKTNKEVTKRKDTRTEDPPTANKNDR
RRKKKSPIQERTPRTRSPAATAVSPGPVVAETTHATNIAGGKWHKVKSKPRPIKKKRPDVIMVKCKDPANYAMVLKSVHT
DAGIQQFKENVCAVRRTAAGELLLQLTKPADEATVKLQQAVKQALGDTADVKAISDKAMVEIKDLAEFHTADDLLLAVLE
LIDEDLPAECHPKMRKAYSGTQTATMMVNPNLANKLLQAGKIRVGMCICRVRLKTEPRRCYKCLDFGHTAARCRSKHDAS
KLCFNCGSKDHASKQCDQKAACILCTRHKRSNTAHNTLSRACPLFVEAGSNRKD
>R1-6_DPer_pol#LINE/R1 1883-4849  [Drosophila persimilis]
MRCTQLNLNHCEAAQSLLRQAVRERKTEVVLICEPFRAIPGSGWTSSSCGKAAIWAVQIPPQEICATNEGFVRARLREVT
FYTRCYAPPSWDLARFQSMLAHIAEDARGRAPVIIAGDFNAWSVEWGSKETNARGTCLLEEFASLDVILANDGRKLTYFK
AGRGSIIDLTFMSVSLHRGSTWRVSEEFTFSDHQAIHFECGAATKRQLAKITGPKWKGDHLDVETFTEYLRNASWSPARE
TAEGLAQKLAKLMEEVCDAAMPRRKPCKRGAPCYWWNAEVNQLRKACLRARRCYQRARGRPEFETRGEELRSAKRALKRA
IKESKSACFRQICEEADVNPWGTAYKVVTKRIRSQSTPEVTCPILLRSIVEALFPQHPYREESVSSQDSELWQQISVEEV
IAATRRIGDKKAPGPDGIPNKALKLGATTRPDVFVDTFNKCLREGVFPEQWKVQRLILLPKGNKSPEEPSGYRPICLLDT
VGKTLERIVYNRLQVVIQEKEALSESQYGFRKAKSTVDAIKAVTDIASRAIEGIRWRFGTKEYCAVVTLDIRNAFNSANW
SRINEALGRIGVPTYLLRIIASYLSGRVLRYETEEGPKLYRVTAGVPQGSVLGPLLWNIMYDDVLRLQLPQGCTLVGFAD
DLALVVVAKELRDVEATANEAIRIVSNWMENAGLDLAGHKTEAVLITSRKKVEYATFRVGNATIKSQESIRYLGVMLDNR
LNYRAHIEYVSQKASRMQAALARMLPNIGGPKAGRRLLLARVVASILLYAAPVWSSTLSGNMSLRRKMSVPYRLCALRVV
SGYRTVSDNAALVLAAMIPVDILALEMTHVYEARAGMRTNASLETIRASERRASIEKWQARWDTATNGRWTHRXIPDIES
WIGRRSGEMNYHLTQFLTGHGGYRKYLHRFKHEDTPECPECSNESEDPEHVIYHCTRYRSSAEYFPRPEELMAFMTESDE
NWQRVSNTLIAIQSDLRRCERERRVEESA
>R1-10_DWi_pol#LINE/R1 1574-4564  [Drosophila willistoni]
MMRLNFIQVNLNHCAVAQDLLHQTVREGGYDLALVSEPYRSERNADWVSDINGKAAIWSCGTSNLPIEEVAQMEGFVRAK
IGGYWVYSCYLPPSYTLERFGCIIDAISVDARGRQGVIIGGDFNAWAIEWGSTRSDARGRLLLECFCNLSVSLLNSGTRN
TFSRAGAGSIVDLTFASDSLAPQSNWEVGRHYTGSDHEAIVFTVGTTRQRAERTCPIGKSYKLESLNLHTFSSVLENLRD
VRLGDADAAANSIMSTLESACDASMSQRKAYRRHHKPVCWWNDSIADVRRRCFXARRMYQRARGTLAFSDLHLDYKRCCK
ALKKAIKDSKRECFLALCDSAEQDPWGKAYQTVVKRLHIDKTPAPKDAQTVRGIVDTLFPQIVDELPVLHPPLHPHIEEC
TVDEVLDIVRKLKPAKAPGPDGIPNHILKIAVSLQAESFVDLYNSCLREGAFPSRWKKQNLVLLTKPGKTSLEASSFRPI
CLLDTAGKVLESLICARLSSAIQANGGLSEQQFGFRKAKSTTDAIARVVNIAADAIAGVRWKGGSKEYCLVTTLDIRNAF
NSARWSRILVALADFGVPRYLLSCVRQYFQGRTICYTTNDGPVVRTVSGGVPQGSVLGPLLWNTMYDGVLRLKFPPGTHI
TGFADDIVLAVVAKTVKEVEERSNAAIKSVEQWLQAAGLQLAAHKTESVLISSRKAVETAKVQVGSAVIESKRAIKYLGV
LLDTRLSFREHLQHAGEKAAKSAHALSRILLNTRGPRQGRRLLLSTVTTSTALYAAPAWIDGMKVKSYRRGLEATHRLSA
IRVCSAFRTVSDEAALVIAGMMPIDEQAAIIEAVAKARRGGSSDGPGATRSLARQQSMRRWQERWDTSTKGRWTHKLIPD
ISAWVLRKHGEVNHYLTQLLSGHGCFRTYLRRFGHETSDECTWCGSGIPEDAEHILLHCPRFEAARFSLECAMGHRATLE
NLTRLMVADPRAWDAVSTFASVVMKELRRLERQRHEE
>R1-17_DWi_pol#LINE/R1 3-2877 via tfasty with R1-13_DWi_pol, 2 frameshifts. [Drosophila willistoni]
LLAQTVRELDVDVAILSEPYRVGASSLWAADITGKAAIWTCGKNPLLIQSVQRNNCFVRAKIDEVWLYSCYLAPSLNIRE
FEAVLDQLSADVRGKTKVVVAGDFNAWSEEWASSSTNAKGRTVLEAFATSDLVVLNTGSEFTFNRAGYGSVIDVTFTSRQ
IFNTAKWELCSHYTASDHTAIMCTIGDSPAAAAVTPDKPLCFPTMVGDANDLSRKLMAAITAACDSSVPLRRSIAGTEGL
LTAGIAEARNRCLRARRCYQRARGKDFTSLQQEYADRRRLLNRLIKDSKRKCFLDLCNEAETDIWGMAYKLAMKKLKAIK
PAAPLEQHMEHIVKTLFPSTSTVLPRNDSPTLSEYSPVTTEEVLLAAGHLQDNKAPGPDAIPNKAIKLAARLQPEKFADV
FSKCLKECTFPEIWKKQNLVLIPKPNKPLEDPSGYRPLCMLDAAAKMLEKIISTRLEAAISQAGDLSPMQFGFRKAKSTL
DALSTVVDIAEKAIEGQRWKGGGKKYCLITTLDVKNAFNTANWTKIIDALGRFQVPENLIFTIEDYFRNRVLNYDTRNGV
RSYEIRGGVPQGSVLGPLLWNAMYDGILRINLPPECHIVGFADDVALVVVAKHLREAEEKTVVSMGAAKQWLSDAGLTLA
DHKTEAVLVSSRKTVEVAKIELETCTIQSSRSIRYLGVLLDTRLSFKEHLQHVNTKAAETCRALSRIMMNARGPRQAQRM
LLMNVVKSTILYGAPVWAEAMQRKTYRRGLDSTYRLGALRVCRGFRTISDDAALVIAGMTPLDILAKEAQMIFQQRQGQV
WTPTTRRTIIKMAKEASVAEWQHRWAGSTKGRWTHKLIPDINAWINRRHGEVTYELTQFLSGHGCYRTYLHRFGHETSNE
CTWCQEDVAESPEHIIFECPRFQEERWNLAVEMGETPTVANLTKNMMRTKRSWSAVCNYAFVTMSKLRLLERERHAGGA
>R1-16_DWi_pol#LINE/R1 408-3367 via tfasty with DMRT1C_pol, 1 frameshift. [Drosophila willistoni]
MSRFLQLNLNHCEAAHDLLAQNIREVKAEHAIIGEPFRKKSTGIWVASTSGKAALWSCGASPIQLRHHMAGVARAADGKW
VYSCYLPPSVSHDNFCRALDEIVNDARSRSPVNAWDLDWGSAVTNARGRSLLEAFASLDLVLLNRGSSFTFSRASGGSVI
DLTFVSGGLFRSSSWSVGEIYTASDHEAILFTLGVTKPRQAALPQSRVYKSDTLDVRAFAEAWATHEWTQSTAQRMADQL
SSLLAASCNASMAVRRPFKGRQQPVFWWKSSIGDTRRTCLASRRRYQRARKRGLETWPQLWAAYSACRKELKKAIYEAKR
EVYLSLCDTADQDPWGRAYKIVVKRVYANRFSSPTEASELERIVCDLFPQRADSLNCRRVEHVASRYHVPVTTEEVLAAA
RSLKQNKAPGPDSIPNRALRLAMATRPEIFAATFDQCLKEGVFPSQWKLQKLVLLPKPGKPAEEASSYRPICLVDSVGKV
LESLISARLSEAINEGGGLSANQYGFRKARSTIDAVSRVVCTAADAIKGSRWKGGAKEYCLVITLDVKNAFNTADWGCIL
DAARSFGIPSYLYEVIWSFFSGRRLVYAASTGSVQRQVSAGVPQGSVLGPLLWNIMYDGILRLDMPSRCQLVGYADDVAV
VVVGKELKDVESTANTAIASIMTWLRSVGLVLAAHKTEAVLISSRKLVETATVTIDGIEVKSARAIRYLGVWLDTRLCFR
EHLAEVQRKAAESSRALARIMLNTRGPKQERRMLLMSVVKSQILYAAQIWAPAMEVDSYRRLISPTYRLCALRVCSAFRT
VSEDAALVIAGMVPIDILAAEVRVTAEATSRGIPKSVAKADARRLSLRKWQDRWDAAPNGRWTHRLIPNIEAWVGRKHGQ
VNFYLTQVLSGHGCFRQYLNRFGHDHFPTCPACPEGAIEDAHHVAFSCGRFSAERQRAERAIGQTLSVASLVPSMLESKD
NWAAVSTYFGAIMRELRRLERERVGST
>R7Ag1_gag#LINE/R1  gi|28569878|dbj|BAC57915.1| gag-like protein [Anopheles genus]
MDKQLRGRTISVDERPAVVIRKLGSEKKLGTIVEEPSSAGVPARTMATGGVKSAGTATKLATSTPVSTGEVRRMLADAKA
DNETTVGIVKRLEEQIQLLRLQMEASNEQLKEAQREAREAREDARVREAEHREELRKEKELFNALLAQTLGGTSGARLES
QQELQREQELLRRMESQQRQEQRQQLEDQQRQRWRQQQQKQQRQQRLPAQQWPTVQQSVRAQRQGVTESASSAVPDEAGT
WVEVVRGNQRGNKQNGVNLPQQSAQRQPAHRQHQQWPHQQNGQQQQQRMGIHQQEKRRPRRKRPDEIVVVPAPGVSFKEM
YVKIRTNPRIADFQRQIGVGRRTPRDHLLLPLSRDVDSAALKDIIQEVIGERGSVTVRTEMAEVVLTGIDNMIDEEAIKK
ALMTTLGKQSLVATVNLWERRDMTKRARVRLPRAEAELVKDRRLELGYTYCSVHEAPKVSGQLTRCFRCLERGHIAATCT
GEDRSKRCLRCGDQTHKASGCTNEVKCMLCGGAHRIGAAACGGQPSN
>R2_DAn_pol#LINE/R2 125-3292  [Drosophila ananassae]
FERRKDPWGYRPPGTLKQIGATENNEPRNLNRFVRGESTASSLESTQFGTSAEVNLAGRVPCTICEMTFSSKRGLGVHMS
HRHKDDLDAQRLRVDKKARWSEEETLMMARKEVELAASGVRFLNKKLAEIFTHRSADAISSYRKRSEYKAKLEQIRGQSV
PTPEAEEINTTQRRPSNSEQNRRVPRSEGGPIAPTEQTNNEILRVLQGLAPVVCLPRWRAEVLQNIVDNAQVSGQETTLQ
SLSSYLMEIFPPRNEPHILTRPRTEPRNMRQRRRQQYARVQRNWDKHPGRCIKSLLEEDDESVMPNQEVMEPYWRRVMTQ
PSSSSIKRDMFNMEHSLERVWSAVNQRDLRATKVKLSSSPGPDGITPKTARSVPEGIMLRIMNLILWCGNLPYSIRLART
IFIPKKATANQPQDYRPISVPSVIVRQLNAILASRLSAAINWDTRQRGFLPTDGCADNTTIVDLVLREHHKRFKSCYIGT
LDVSKAFDAVAHEAVYNTLASYGAPKGFINYLRKAYEGGGTMLAGNGWVSEAFIPARGVKQGDPLSPILFNLVIDRLLRS
LPSEIGAKVGNAMTNAAAFADDIVLFAETPMGLQKLLDTTVCFLSSVGLTLNTDKCFTVSIKGQAKQKCTVVERRSFLIG
GRECPSLKRTDEWKYLGIKFTAEGRARYDPAEDLGPKLLRLTRAPLKPQQKLFALRTVLIPQLYHKLTLGSVTIGVLKKF
DKLVRYTARKWLGLPVDVPVSFFHAPHKSGGLGLPSLRWTAPMLRLKRLSNIKWPHLERSEVASSFVEEEMRRARDRLQA
GSEELLTRSQVDSYLANRLHMSVDGCGLREAERFAPQHGWVSQPTRLLTGKEYTDGIKLRINALPSRSRTTRGRHELERR
CRAGCDAPETTNHILQQCYRTHGRRIARHNGVVNFLKRGLERRGCVVHVEPSLQGETGLNKPDLVAIRQNRIYVIDTQIV
TDGHSLDQAHQRKVGKYDTPDIRTNLRRSFGAFDIEFHSATVNWRGIWSGQSVKRLIASDLLSSGDSNIISVRVISGGLW
SWRQFMYLSGYTRDWT
>R2-1_PM_pol#LINE/R2 1631-4885  [Petromyzon marinus]
MNERLTDELTTEFILSDMFLWDYPCTDQNKCYPCNLVFLDHRTWSSHMARVHPHANKTYKCRICNRTADSIHKIASHYGR
TCKSLIGKTNAITTTIDETLFSCLHCSRGFTTKTGLGVHTRRTHPTEHEAILQQNTPGRKVRWGEEEVEIMAHKEAQQKD
EDINMNQLIQNSVMPHRTLEAIKGKRRNIKYKELVRTLKETTYKVENQCLVNLVLPTTSEITTTPSEGDQPAIRAEKEQS
PTAAEDLQVIINDLKSQNFSHNQALLLLNSHVEKFLNRSKPIKRKDHVNQQEIDENRHRRQSKQTKYRRYQYLYHTNKKA
LLDEITSDRSGPSIYPTEESIRGTFVTLFESNSPPDNIPSKLKNDQSCIDIVKAITLDELIKTLAIMKDKSPGQDNITLS
DLRTLPIKYLLDILNIILYIQDIPQIWKQHRTRLIPKTKEELEKPSNWRPITISSIVIRLLHKILSYRLGQQLKLNYRQK
AFLPVDGCFENSALLHFIIHNARQKHENTQIVSIDLSKAFDSVSHESIIRALNRFNLSKESITYLTNIYKCNLTDIVFGS
TIMRNINLKRGVKQGDPLSPLLFNMIMDELLDNLPTYIGVNVGNQKVNSMMFADDLILFAETECGMNKLLDITTKFLDDR
HLKININKCNSLRFIKYGKQKTFSVATTSSYFINNEPINPVSYVKGFKYLGIEFDPRGKRSISCNLLAAMLNKLTRAPLK
PEKKVYLINNNLIPRIIHQLVLGKVTKGLLMSLDSEIRKTVKLLLRLPHDTPDSFFYTSVSNGGMGIRNLCDSVALSIIN
RHNKLITSDDLVIRALSQQSYTIATLKQAHIIAGSKFPSKSLNQNKWSNKLYQTTDGRGLVYCQSQTENNSWITGNHRTI
KSYNYIDMVKLRINALPTKSRCNRGTLETKQCRFKCRSINNQISEETLAHILQKCDRSHYSRIARHDSLVQFLATAAQKL
NWEVIKEPTLPSDTNKAKPDLILVRDSHVLIVDVAVPWESRSLAHAYDFKVKKYATDKKMQAYLKTIYPEKEIRTEALII
SARGGWCALNNMVTKKVGLSSAWVKLALIKVMEGSVKIWRSWSKG
>R2_FA_pol#LINE/R2 304-3324 [Forficula auricularia]
MQRCTTSDLTFSQCRFPHCKFRRPSLTGVRVHEQRSHKAFFDRLQAEVIRNQTSKKKPRWTEEEKNLLALAQANLIIEEE
TNIIDDLVSKFTYRTKDALKSQIRKPEHKTRVSEFTLAIQAHIDNIMLPAPVPIATDPLQVSCNFKDRAKDYIDTLEPIT
STKFYLDELEALCDNICIWPTRLLITTVESYIRKLFKTTSTLKPAQKLHNPSNRNLPKRQLRRMEYGKTQKLWKKNPCRA
IKTIIDDKDCKSPPEREAMTQYWKTTFSSKKRTCPQYEPRESTKTQLWEPVTIEELHCCHLEMTTSPGPDGITVRQLYLV
PEQLLVRILNLLMACGKMPDSFLESKTTLIPKKPNSTEPGDFRPITVQSVLVRQLNKILAARVAQHIPLDERQRGFRPVD
GVAHNIFELDMILRCHRSEFRDLRLASLDIAKAFDSITHNTIEDTMEVRGFPKPMINYIMACYRRSKTRFTFNGWISDTV
KPTCGVKQGDPLSPILFNLVMDRMIRKLPKEVGVNVGSKHYNGLTFADDLLLFATTPEGLQSSIDIVHLFLLECGLLINK
QKSFVLTVKAYPKLKKTAVIVTEKYMLDRHILPAIDREKLFHYLGVPFTAEGRCRDDTIAHLKRKIDVLTKAPLKPQQRL
FALRVVILPSCYHILTLGGSNLSLLKKIDLMVRAAGRKWCCLPKDTPNAYFHASSRDGGLGLPSMRWLIPLHRYLRLLRY
EGRNPEDTNVYLTTEINRAKIRLSDNGSNIDCQAKLWQFWADRLYKSVDGSALIESSKVPQQHRWATGGSRFLTGRDFIN
SIKLRINTLPTLSRTLRGREGNRMCRGGCYNVETLHHVLQVCHRTNGTRVKRHNAIRQYIARGAAVKFDTVEREPRIKSA
SGAVNIPDLVACNSDEVVVIDTQIVWDQANLDEAHQAKAEKYAHLSDILKHKYSRDRVKFTSVTLSFRGLWSKQSLKELT
DLGIVNSKDIQIISTRAIIGGIASFRMFNSTTSVNSVNSFLEIALG
>R2_RL_pol#LINE/R2 1139-4732 [Reticulitermes lucifugus]
MMADYNNSVDHALEDNTRLIFARDAVLARVCGPFDNLECGLCGVLLTSLQGVREHCHRAHHNLDLTFQCTKCDKGFSSYR
GICCHFSKCIGARISVSEGPLSCSECEREFDSKRALSTHERHMHPGIRNAKRLKDFNPRGGGGKTIHGNTKWTEEEVQLL
VSLSKRFEGYKSINKEISLILTSKTCKQISDKRRYLNLHNGNGGLAAAEAVLEFCEDSHPEVTESDGAVLSEIMDEECHQ
SSVTMRSSIVHGDIGREVQGKELVRIPPDNSVMGNCVVLLRKLATDKRSDLDLSKDKELRIDIEKATKANRESADGRVIQ
SVAGNEIDPDTFQWKELLLGQVRGFPRVDENSELFDLDDKLTKELSSDSPVWNDNCELIVSDLCQVLCKKKYELGRQHHV
RKGKRHRGIHHKREKFRECQKIFRKSPRKLAEYLYRDKDLSHISKDASTPQGIEQYYSQLWGEPELLESNTIEEKLPSSS
LFDCLPPITPEEVEGRIHKIRPSSAPGLDGVRKIHLVGKGITLVLVKLYNLLFLTGGYPECWKRNRTVFIPKIGKDLSEV
GGWRPLTIGSLLARMYSAFLERRIRRVTSLSLSQRGFTNIQGCHVNLTILKEGIRQAKVKNGGVIVSVDIEKAFDTIPHS
VIFSRLASQGVPPLLRKIISNMYKDVYTVIEGQCIPIKRGVKQGDPLSPLLFNIAIDPVLRSLEEFQGGLPLGNSAIKIL
AFADDIILGASSAGQAQQMVDMLGIGLTSCGLGVSHRKCFGFQIVNKNKTWTIVDPMITLNGSSLPFSGPEDRLPYLGVD
INPWDRKSRYDAGQRLISAAKRGSQLSLKPQQKINLITAFLLPKFLYILIEDPPSPAYLKSIDHDLRQIYKNILHLPNCV
STAFMYSPKRDGGLGLPRLSCLVPLAHLKAGIKLGSLQDSLVREITTSDRFVRTMGSVAHSLWASWSLTLQDIYKLKSAL
KRREAKAWESCVSQGQGAAQFRGDSIGNNWLHNPGTYRPGQYIEALKLRANLTGVRVNLKRSGYNVPITCRFCKDIPETQ
AHVLGLCPKTKGMRIQRHDSIVNRVRDKLKTKSPVALMHEQNFTVEEGQVFKPDIVTILGEVGYVIDVTVRYDDRDYIKD
ASVEKIRKYEALKGYLKDLYPQLNKVEVLPLVFGSRGAVPGSTVHNMGLLGFTKREMVHISRKVIADSLIISNFLEVY
>R2_KF_pol#LINE/R2 335-4261 [Kalotermes flavicollis]
MEVPLTSSLGSGATQAPGTPELLGEHTVERPGLDQGHSYGLLMDDVELPVRLPFFGPLICPGCRTLLTSEETISSHHRRV
HPDARTRWVCYGCDSPFMTYRAIKCHLPKCSGRKVVTGDHICNGCTKRFESQRGLSLHKRRAHPGLRNEEMLEPPVRAER
RPNAHKSSIWSIDEIRILEQYEAAYVGDLHINMKIAAHLPFKTNKQVSNYRNDRRKKSRTATDASQQGLGPNDGNRGIVP
SGQSSPLFLEGSDAEGDEDVFNVLVPPTLGGLEPAGQVHSLSEGETSPLVGEADPCFMGGTPSAGEASGSTLLGPDPTPA
DGYSLVRKDLQLSVQTSPLLAVGSVGTESVQFERGVLSCGTPPEFLHPEQFAHCANNDPVLNASEEQVHAPLGEEANDLP
DNNHPSELGVDPEDPTCSPATEQVQPSSEEEADDPFAQFKAWRRRVASYALKIETGVLPAQVDDLLRRLRDGDTQSKVTC
EEVEEVVLSLTRTILGGTAPKKRVEGRTKWTYKSRTNHEARKRIMYARCQDLYRRRPQRPVERAVGYQAEESLLDNQDER
PSHGAFETFYTGLWGKSGQCNITMPPGVPRHTGHVLREVTPKDIYSRLRKLKKDYAPGPDGVTKLKVQSMGAYPSLLAKV
YNLVMLTGYFSSCWKEHKTSLIPKDRGSPMDVSNWRPITIGSLLSRIYTGLIERRLRTVSDIHQRQVGFMPVNGCAANLF
IFDECIRQAKKEGTIVGSLIDVAKAFDTVPHEAILRALSSQGVDEHTMAHIRDMYSGIRTRINGKGSDIPLVRGVKQGDP
LSPMLFNMVMDPLIRDLQRKGFRIGGHEIGALAFADDIVLLADSIDGAQDHVDQVGRYMNKLGMTLNPRKSSSFLITAMR
KTWICRDPGLSIGETKVPGARPSSALKYLGVNYTLSEGLESGALIDKLMQAVNRARGLALKPLQKVNLILERIIPKFLYG
IILGGPSLTRLHAADKCVRMAVKEILHLHPSTTDHVLYARKKDGGMGIPRLAHLVRLASLRSGLALLASGDVAVQAAGMA
GDLEGRCKKVANDLRLNWPVTLRDVVRASNKFKSQESKDWERLASQGHGVKDFRNDRLGNCWLYDPTVLSSSRYTDALRL
RTNTFGVNVALRRADKDLEVNCRRCHGKPETLGHVLGECVAGKGMRIQRHDKMAAFVATKCEEKGYQTTREQLFSIEQGK
LKPDLVVIDGERALIVDVTVRFESGNALSRGASEKIEKYQPLADYFVSQGAVREANVLPIVVGSRGAITQATLKSLATLG
LDVERVGKYLAICAVASSVEIACMHLDYT
>LIN6_SM_gag#LINE/R2 2555-4320 via tfasty with LIN5_SM_gag, 1 frameshift. (C term fragment; remainder has 31 stopcodons in it) [Schmidtea mediterranea]
IGYLDRRDPHGGWIDDTRLTLQVPAHSAAKYRQALWDHGYSLATYGETSWPRRPDDRGDEVELPSVAIKREPGRNPAREA
RQRAEFNLLQLENLDDIILSESSDTSQPPSQLLYQPSSCPKTATIQQVDLDQSSFTDDTSLTAILSKPQSQSTSYPINNS
PLTIQQHNVTISSSPEPTCCSTPHNHLNLNTFNTPSTFFASLKKQPFEQPITPITKNCKTDLYEPCSLNLTQLDESLPIN
PPRIKPSPLISDDEEPSSTKTPSQKPAKNLTYAQNSQISDLFRTQEPLSDNSSPESLITLNTSIISNLATPNEPHNFIIP
APVLNITSKITTKNIPISTPLPSCLKQQNQSISIQLHDINETLYDMNRRGKLICRPKHRNKTLCNSISIYNRHFIFEHAQ
KVHNITITDNTIIDCYQCKPKKGPNKHAMVKIKFIDLYKHIELNDHPIEIDNCSKNNQIIKINSSNKIICHNNNKGKNIR
LCYHKFTYNTAINDIILHMTKKHKKKHFDKEAEIYCYCGAWISIHNIALHINDKHPSTPNINSTDYIDKKDNNKNLFAGI
INTDETIQVPIELPKTLLFTKNIDSESQ
>TRAS3_BM_gag#LINE/R1 2207-3673 [Bombyx mori]
LTGLNHYRTRQSFARNTSTPLTTCSEYDPPSRKAMTSDKSPRNPKSPEGGERRSIGLRIDEWETSKGKTIPSSTKLAAQT
VVAAKPTTSQAGKTTSPGQCQDRSAEAKACLLKAKLHLSNSGNIKREIKIEVTAALDKLYQLVKDAEMDRKKGKSKEEKT
GDVGQRATDRTFTVSPMDANIYVAKMEEHAKLLQESKKMMGDLKEAMEKATVTAATYASVAAIQPAATNEKPEVMRQTLH
SVVITSKDECETGEKVLDRVRKAVDAKEGWIEVKNVRKAKDRKVIIGLGTKAERDKLKNRLEKAETQLHVEEVENRDPLM
MLRSVLTIHSDEDILKALRNQNRDIFRDLCEGEDRVVIRYRRRARNPHTNHVVVSVSPTVWQRATGKGSVHIDLRRIKVE
DQSPLVQCTRCLGYGHSKRFCVESVDLCSHCGGPHLKTECSDWLAKVPPKCRNCTKADIDNAEHNAFDSNCQVRKRWDDL
ARSTVAYC
>RTAg3_gag#LINE/R1 1206-2741 gi|28569854|dbj|BAC57899.1| gag-like protein [Anopheles gambiae]
MMASSGMSTRASARSASVDCRSSLASGSKLFAPEPRVALPRVSVTGINKPTVATKAASTTPELELLKATIQQLEEQNLEM
KEQNFRLAEQITRMCQLLQEEKEEAKRREEKLKAQMEKLAAAHQRDRNLLNSLLAAKVAGGQPSASSRQPPTPLPRRSSA
QPQQQQQQQQRNQQEQEQPRASTSHAVMLPRSEASTAVRGDVVPELTFSEVVRRRYRGKATGKPRSQQQPQQQQQPQQKQ
QQLQRRQQQQQQHQGQRYVPPQLRQQAHQQQQRQQQKVRPRPDKIEVVPSAGHSWYTLYKTVRDAVKQDPHKGLADHLKM
GKRSHAANFRMELSNSANASLVRAEGQEIVGDAGLARVITDMADVLITNIDPLATEEDIKKAIEREHQEPIEIVRVSVWE
LQDGTQRARVHLPAKAAAAFEGSKLRLCGCISKIRGVEKAAPERQRCYRCLERGHLAHACRSSTDRQQLCIRCGSEGHKA
RDCSSYVKCAACGGPHRIGHMSCEHPASRST
>Waldo-1_CQ_pol#LINE/R1 1929-4895 [Culex quinquefasciatus]
MEVSQVNLNHCDTAQQLLWQSTAETGCDVAIIAEPYRVPHDNGNWAADTARMAAIHVMGRYPIQEVVSRAFEGFVIAKVN
GTFFCSCYAPPRWTLEQFQQMLDSLTDELIGRSPIVIGGDFNAWAVEWGSRCTNARGHSLMEALAKLDVRLANRGTSSTF
RKDGRESIIDVTFCSPRLAADMNWRVSEDYTHSDHQAIRYSIGRRAPVPDRSSRSYGRKWKLQYFDEGLFVEALHWCDGP
QDLSADVLTAQLVTACDTTMPRRLEPRNCRRPAYWWNEELGTLRASCLSARRRVQRARSEATREECREEYRSAKAALKKA
IKCSKTNCFKELCQDADANPWGSAYRVAMAKIRGPSMVAETCPDKLKVIVEGLFPRHDPTTWPPTPYNDEGGSNAEGHLI
TNEELVAVAKRLKVKKAPGPDGIPNFALKSAVLAFPDRFRTVLQECLDEGHFPDPWKVQKLVLLPKPGKPPGDPSSYRPI
CLLDTLGKLLERIILNRLTKYTESEHGLAARQFGFRKGRSTVDAIRKVVEKADEARRKKRRGNRCCAIVTIDVKNAFNSA
SWAAIAAALHKMKVPDYLCRILKSYFENRVLVYDTADGQKTVVVTAGVPQGSILGSALWNGMYDGVLTLGLPNGVEIVGF
ADDIVLTVTGENVEEVEVLAMEAIAMIENWMLEVKLRIAHHKTEMVLVSNHKKVQQAQIHVGEHVVHSKRALKYLGVMVD
DRLNFNSHVDYACEKAAKAIMALSRMMPNNAGPRSSRRRLLASVATSILRYGGPVWWTALGTKRNRALLDRTQRLMAMRV
ASAYRTISSEAVGVIAGMIPIGITLEEDTVRYTRRGTRGIREAARAESLARWQREWDTTEKGRWTHRLIPSVSTWVSRRH
GEVTFHLTQFLSGHGCFRKYLHRFGHAESPLCPDCVDCEETPEHVVFACPRFEAARSEMLAIIGADTSPDNVVRRMCSDI
AKWNAVVGAVTQITSALQRKWRDDQRRND
>LIN1_SM_pep#LINE/R2 2360-3049 [Schmidtea mediterranea]
RYVPASVLESATISEETDAECTKLKNTKLRDPKVWFTDDDIDQYLERHISNPTFAHLPCFIISILSSDIKENIISIPDAV
FKAEVILCPLNINNAHWILFVYSKSLLESYFIDPIFANRNLFKNKQATLKINIALNKIFKLQVASSCHPFQNLIYQENSF
DCGPFICAYAILISQGLDTFPNNFIDGIRREVHDFQIFGSNKVSQVIGGGLPKNNLMGINFKKSNCAYS
>Waldo-2_AAe_pol#LINE/R1 2326-5343 [Aedes aegypti]
TAVEVTQLNLNHCDTAQQLLWKSVSESKCDVAILAEPYRVPAGNGNWIADKAKTAAIWTMGRYPIQEIVFQADEGFVIAK
LNDVYVCSCYAPPRWTLDQFNEMLDELTDKLADRRPVVIAGDFNAWAVEWGSRLTNPRGRSLLEALARLDVDLGNEGTTS
TYRRDGRESIIDITFCSPVLTGGLNWRVCDGYTHSDHQEVRYRIGGRTQCSQRASTPHEQMWKTKRFNEELFVEALRREE
QVLNLRSEELTAAMVRACDIAMPRKVEPKYRRRPVYWWNETLGNLRKRCLQARRRMQRAKTDGEREERRVTLRAAKADLK
REISLSKRTCFKELCRDANANPWGDAYRVAMAKISGPAVPAETCPEKLQIIVDGLFPQHAPTVWPPTPYGQEGEERAIIT
NEELIEAAKKMKPKKAPGPDGIPNVALKAAITANPDMFRTSLQICLDEGHFPAQWKRQKLVLLPKPGKPPGEPGSFRPIC
LLDTLGKLLERIILNRLMAFTEGERGLSEWQYGFRKGKSTVDAIKTVIDTADKARTKKRRGNRYCAVVTIDVRNAFNSAS
WEAIAVALHKMKVPDYLCKILGSYFENRVLSYSTSEGQKTRSVNAGVPQGSILGPTLWNAMYDGVLTLRLPTGVKIVGFA
DDITLVVIGDSLERVEVLATEAVDAVENWMYEKKLVIAHQKTELLLISNRKVVQKAEITVGEHTIASKRELKHLGVMIDD
RLNFNCHVDYACEKAARAVTALSRIMPNNSAICSSKRRLLSSVATSILRYASPAWGTAMKTKRNRVKLSSTYRLMAMRVA
SAYRTISSEAVCVIAGMVPIGYVLEEDKECYEASSTRGARKIARADTMVKWQREWDTAEKGRWTYRLIPNLAKWVSRSHG
EVNFHLTQFLSGHGCFKKYLHRFGHAESPLCAECPVVEESPEHVIFECPRFAAERSEMTAVCGADVTVDNVVDRMCSDEV
MWNAVNMAVTKIMSLLQRKWREEQAGEPEVSLQPESPNRPRHPTGR
>Polinton-3_TC_int#DNA/Maverick 10386-11330 [Tribolium castaneum]
MVRLKQVSDVKQKLVNEIFKPARRNFKRRRTIIKGLDDLWQVDLAEMQNLSYHNNGFKYILVVIDCFSKFLWTRPLKSKS
ANEVSRAMESILKNEKERIPKNLQSDQGKEFYNTTFQDLMRRYNINHYSTYSVKKAAIAERVIRTLKSKIYRYFTLFATH
KWINKLQEITKNYNTTIHRTTGRKPTEINASNQGDITAYDHLKIVDKNRKKFKVGDFVRISKEKMLFEKGYTPNWSTEIF
KISKINLTNPVTFLLEDKEGQPIKGAFYIWELSKTQYPDVYLVEKVIRRKGTKLFVKWLGLPDNQNSWIEMKDIT
>Polinton-3_TC_atp#DNA/Maverick 7541-8233 [Tribolium castaneum]
MKVLKQKLQLPIINHDYNNVDNKHKMSHRHGTLLPESIRCIICGPSGGGKTNILLSLLFDPNGLKFENIYIYCKSLYQPK
YKLLSDVLQKIKGMEYNQYEHNEDVLDPKDAKNNSIFIFDDVIMCNQAKIRDYFCMGRHKNIDSFYLCQTYTKIPKHLIR
DNANLLVILKQDLLNLKHVYEDHVGADMKFEQFCEICQECWKNQYGFLVICKDNELNKGRYRKGFDHFIQV
>Polinton-4_NV_px2#DNA/Maverick 5103-6035 [Nematostella vectensis]
MSFLKITDPSKRDFLVDEFLKSKRNIQQNSMSEKLGDISQQYDLAKLYKPITESQAGLAAQLSSIKEATKDTSTALKALP
ASITSSLKAITFPQYPSIEVFEDPVESKQTLELGDLATKYLQQYASNKKAVDTTFGIYSKDGQFYIGNSPITIRGDDVTV
GDKTYKGTPGLWELLTMAKPNNSIYNDTDIESYARILDETNAIRSTTNPNKPKSSRSDKYKYIIKPIWDNLAYVDATARL
SPVKGEGVSSVILPSNPNVLVEMLSLRLAGYKAGNTGAANEAVAICDELLRQGALNKDSYKAIMLQLARE
>Polinton-5_NV_polb#DNA/Maverick 2233-6402 [Nematostella vectensis]
MAYDGDDGNDEWLTQLLEVLPDPEEEEEESERLPPDFFHDDLAESDLPQFSSFDELFDYYCTPEGEGEEISFEDPFLNEP
GPSGLQQQQQEGRGKKRSHDSDDEEEEEEEEDVTYDLRQVTTRHSTKMRTDCTDYELSVDLPTRGTIKEALEDVERVLDR
VLDDTLRGVQKHDYARLTLDAPALKNPIALPFMRRHQLTPQRIMGVVETVVQSNEQFVLQGNFHLHVVRTHMPFGAGKRP
KSKKNSSTLDTGDLETWLKGKRSITRVRNHDELCAARALVIGMAHLTEDPDYVKLYNPKDGGARLPLQTERARALHRDAG
VPEGPCGLPEIQQFQRYLGERGFELNVVSREHANTVIYSGNLPAPEYRLYLYYAKGHFDYINSMPGMLGRCYYCTSCQKG
YDRXNHKCNNLCYGCGEQECSPLVPPAEQDHRWEWQYCDECHRYFRTQTCFENHRRVKPRGVKKRGGGGEPQDSWSYCQR
YHKCETCGKRVDMMDRKEGEEHVCGEYKCSVCKEVVPPDHLCYVTVGDDALPKKKNSTDDDDDSMRLIIFDFEAMPLEAK
HTVNFVGVQKLCETCKGWSMDRLECETCGLRKRSFTTVQAFCDWLFDGSNAGYTCLAHNFKGYDSYFILEYLFTNGFKPE
VIFTGGKVMYLNIKSLRIDMKCTLNFLQMPLSKLPKAFGFDHVTQKGTFPHFFNTPEHQDYVGPMPDLSYYDLQGMKEED
ARALRAWHQAEVARGAVFNLQEDLASYCHQDVEVLKRAVLAFDELIMAAAGLHPFQVAITIASLSSRILRTKFLEEKTIG
LIPTRGYRGHDVQSLKALQWLKYIEHREGEGVFIQHAGNRGEVRLAGRIKVDGYAESTNTVYQYHGCFYHGCTTCFQPHT
VNPLTNTTMQELREHTRAVELRLKAQGYNYEEVWECQFDAQLNTHPELRALVGDVEHGKPLEARDAFFGGRTNAIRLHCE
ADVEQGEEIHYYDFTSLYPWVNAMCEYPVGHPDAILTENFEEDLHAYKGLMKLRVLPPRDLFFPVLPVRVNDKLMFPLCH
RCAQEEEQGSCTHSDEERAFTGTWAHPEIYKALEKGYRVIRVYEVWHWERWARLFEEYIKTFLKYKQEASGWPGWCTTDA
DKMQYVDDYERHQGVRMDPSKIEKNPGLRSVAKMGLNCMWGKFGEQPNPQRTEYVDDPKAYFALLNNDSIEVNDVLIVND
DLIQVHYRLGEKFQELKPHTNVVIAAFTTAYARLKLYDVLDGLGERCLYHDTDSVIFLHRPGEWKPPLGDYLGDLTSELE
PGDFIDRYSSTGPKSYGYTTQQGHSTCKVKGLHINLRTADIVNLTSMLELLRVEGAVAEERHVTLPYTIQRNVHDRTLHT
VPAHKTFRVVYNKRVRRGMRTYPYGYFKL
>Polinton-4_NVi_int#DNA/Maverick 3323-2370 R [Nasonia vitripennis]
MRFCLKILRIIMTHQKARLVEELHKPARRNYQRRRFIMRGLDDTWQADLVEMQPYAQENKGYKYLLTVIDVFSKYAWAVP
LKQKTGNEVAAAMKSILQQGRVPKNLHTDRGKEFYNSSFESLMKQYGINLYSTYSNLKASICERFNRTLKNKMWMQFSLR
GNYKWLDILPDLLTEYNNSKHRTIGMKPKDVSRENEAKVLKRFSHQESRKKAKFKVGDKVRVSKMKQVFEKGYTPNWSTE
IFTISQVVPTYPVPTYKLKDYRDQPIAGGFYEQELLKAKYPDVYLVEKVLKKRGNKLYVKWLGFDNTHNSWINKSDL
>Polinton-3_SP_int#DNA/Maverick 1963-3048 [Strongylocentrotus purpuratus]
MKGLERVLRDIYSSPEHRASFGSVQKLWQAAKQNGFPNVRLHRVKSWLEKQDAYTLHAPVRKKFKTNRVRVRGMDEIWES
DLIDVQNLGKFNRGYRYILTCIDVLSKFAWAIPLKTKTSNDVIGAFKQILDEGRRPIMLHTDKGSEFMNRKFQTFLKDRD
IQFFNTENTVKCAVAERFNRTVMSKVWRYFTFNNTYKYIDVLTRIMQGYNGTVHSSIRMKPQEVTIENQKRAMEALYGER
KKGKSKKTTRFKFVTGDRVRISKSKMRFEKGYETNWSEEVFTVSARVKRKLPVYKIKDYNGEQLRGTFYEKELQRVVKTV
DTSYTVEKILRNRIYKGKKQYLVRWKGYGKEFDSWVDRVENR
>Polinton-3_HM_pro#DNA/Maverick 27186-28298 [Hydra magnipapillata]
MTTDLSLEKYCKKNFKNFKGVFPFDQVNNVFKQNFQVGDFFIYNSDSSKKNGTHWRMMLKLNNNSLFCFDSLGKESFFQQ
IPIAVQNNPDLLEYAETNSLSTALSQMTLNFNDHLYTRRKKHFPLRDTQDEWFTKFCFYYSQKHDIQNVNIVFNDLAYQL
GDSSLCGPWILYFLHLLRQQWFNSSDIEIDTIDSILNQYFTFAGDNRTKNECVSNLSDFFYFVKTSFWLYADKTAQKLYE
KDFQIFDRLNVKERTAGALYRRRPTPYSGINKDVYKNDIKKNNTLTAFLSQNNLLLVKDPATPFLTNDDLKNLPAILKSN
LMQTYLDDDQQRHTYNNYQKLKNIAQFYSIPVEQRNELSELKKMLQKYEL
>Polinton-2_HM_p4#DNA/Maverick 36002-38006 via tfasty with Polinton-3_HM_p4, whatever that may be, 1 frameshift. [Hydra magnipapillata]
MIYVKHPQVAPGDIANLTPERXVILNNTEETFVRPFIHIMVTPKYGGALVQNSQSAPLVPDTRDANILSVDLDVYVNNLL
PSSESVKTSKMKHIVPWQIAFFLLKIMTNTNTIKSEGNIYNIETDLNEIPIQINALWKIWNDQVNVKDANNNYTEEKMSL
TSFIDILKNAFGTISTKLLYISPSAIGIEPTELFACFYQIFFPKTSQRKYYRFTLQNIPLASLPIPFFNVDQIIWPEREL
KMMDIFTESINYNLSNNLLNLKLNNLTFNEFIYEGTNIYSYQKFLNQYNFSSIPNDYYKNYYTFWCLPSFEQNTYEINLK
SPLQISKAIIASTNTYNNYFEMKGNQISPYHAQFGSLNTFTTSPSNLPEDIYKIITADWSLIAKYNSETFIEVLMYCEQT
KSIFSPTLKVPLVTTAAFERATTPSYKTWLNGSKSILQGNNINELVFYCTSLNGQLIYQKKSDGTIINSWSNSLPLKNII
LKMYQPIGNNPVPYTLLLQRDQYSLTNEINPFNIEIDQNMVYTMAQDFKIQKRKLAFLRCTLMQISNFNNSVSNFPTTTD
NLIFIKCDQATNCGMYMNRRYETGIVSYFNLSDYNNATQVTVNIDFTKNRKTEIQGQLTTFDIVDVEDWKKTKMTFLNTN
KEPLKFNNLSTTVFFNPTFKIQMVPFYN
>Polinton-3_NV_atp#DNA/Maverick 6739-7365 [Nematostella vectensis]
MEELREKVPFHCIITGPTNCGKTKYLTEQLRGPFRHVFEYIVLICPTYAKNKSYRRFAHGDKRFLVLSPDASNTDEINEL
LTDCAVLFSGTNTLLVLDDCAVSKDLKQRSNKFIDLAFSGRHDGLSVWVLTQQLTSIAKPFRDNVACVVTFHNPSQIGTK
TLFEDYGGDLDVETRKKFVELLKTEKYSRLCFCLRHPFQNYLEIPATR
>Polinton-3_NVi_py#DNA/Maverick 10156-11553 via tfasty with Polinton-1_NVi_py, 4 frameshifts. [Nasonia vitripennis]
MSSESQSTTNRQTVNTSEHSVSTESRSQGKKRKRFQKSKKEQKINCVFVCCCIPEKNGREGGLDIQSPIIFYESVAHYEI
HAHQPYTSASFNNSDEIRISIQHQDCLLPSKSLLHICGKLTKPDGTALQHTKFVNNAICHLFEEMRYEMNAIEIDRCKNV
GLTSTMKGYVSFAPSQNKYNENSGWTNVSEEEVITDNNGNFDITIPLSMIFGFAEDYRKIIVNAKHELILTRSRSDMNAE
AIMVENRATYDDFKLTISRIEWLMPYVVLSDKRKIQLYNYIQKDIPIAMSFRSWELYEYPVLPRTTQHVWTVKTSNQLEK
PRFIILAFQTARKGHNSKNCSHFDHCKISNVKLFLNSQNYPYNNLNLDIDNNQFAMLYDMYAQFQSAYYHENMNPLLSKE
EFITYAPLIVIDCSKQNESLKQAAVDVRLEFETKENIPADTTAYCLIIHDRIVKYNPISGDVKKII
>Polinton-3_NVi_atp#DNA/Maverick 8050-7352 R [Nasonia vitripennis]
MDLQEQSLKLPVINFDTLTESNPKRYKRHGNLLPDSIRAVFCGPSNCGKTNALLSLIIHPNGLKFENIYVYSKSLNQSKY
KFLEKLIEPLEGIQYLPFGEHDLVVSPDEARANSIFVFDDIACEKQDNVKAFYCMGRHKNVDCFYLCQSYAQVPKHLVRD
NVNLIILFRQDDMNLKHVYNDHVNTDMSYQRFKDLCSSCWNSNHGFLVIDKDSKINDGRYRKGFDKFIINME
>Polinton-5_NV_pro#DNA/Maverick 12086-12652 [Nematostella vectensis]
MRTEELEAMARSDPYIESVFEGVFPSDRLPTFIPEDGNGCAAYIVNVDPSNKPGSHWLAVYFTPHRCEWWDSFGFPPHAY
GQNMXDFCALRPPPVVTNPQRLQALNSAVCGQYCLFFLWHRTRNKPLEDITSMFSTHXDWNDQVVCTFVHDTFHVRALSQ
QRRRRVPYCPWRQCAVPQHHLVHALNDS
>54028461_Polaromonas#DNA/Merlin gi|54028461|ref|ZP_00360611.1| COG3676: Transposase and inactivated derivatives [Polaromonas sp. JS666]
MCQDCGRQTTVTSGTIFDKTRTPLKVWLAAAWYLTSQKQGVSALGLQRVLGLGSYQTAWTMLHRFRCAMVRPDRERLKGL
VEVDETYLAISDRQQPISAVGRKSRTSKVLVVMAVEILQPKGFGRIRLHRIANDSDECVVPFVQQSVEPGAQIRTDGSAA
YRSLSELGYDHERTVMLGSDVPAHVSMAGVHRVASLVKRWILGTHHGSVQPEHLDAYLDEFVFRFNRRTSGSRGMLFYRL
LQQAVVTKPVTYQDITRTTQDMVESV
>48764084_Rru#DNA/Merlin gi|48764084|ref|ZP_00268637.1| hypothetical protein Rrub02002944 [Rhodospirillum rubrum]
MHGSKLPLTVWFWAAYLMATHSNGISARQMGRHLGLGSYKSAWLLCAKLRGAMVNLARALLSGLVEIDETQISYRTKDNP
VAGGGGRSPEGKMQVVVAVEVIDNAPGRLRLGVIDDASSASLHPFIKASVASGATLKTDGWSAYPGAPGYKHEPHVVGKM
AAHIVLPWVHRVISNLKTWALGVYHGLRRQHLQSYLNEFVFRFNCRRTPHAAFRTLLGIGLAIQPVTYNMLIAPEAQG
>58583728_Xor#DNA/Merlin gi|58583728|ref|YP_202744.1| putative transposase [Xanthomonas oryzae pv. oryzae KACC10331]
MGVDRAEQPQCTSGNADLISPIPQPLVAGSATLRLDNDLSSRQRRWEMGINLVQFQPGLSLSEFMDRYGTEAKCYRALYR
WRWPKGFRCPQCDGRARSRFRRADQVYYQCRACRHQTTLRAGTLLQSSKLSLRLWMQAMYLLTSSKTNLAALELKRHLGV
TYKAAWRMKHKIMQAMTEREEPRKLKGFVQIDDAYLGGERSGGKRGRGSENKQPFVIAVQVDHSHEHPVFAVIEPVKAFD
NASLEDWIARRLEPECEVYSDGLACFRRLEEAGHAHTTLDTGGGRAATDVQGARWLNVVLGNVKRAISGTYHAVGQAKYA
RRYLAEAAYRFNRRFDLKQMLPRLATALLRCTPCPERVLRMASNFHG
>CA939780_Hgl#DNA/Merlin gi|27428260|gb|CA939780.1|CA939780 ru08c04.y1 J4 Heterodera glycines cDNA 5', mRNA sequence (nematode) [Heterodera glycines]
ESRKRGICSRWLLDNPIRLGGVGHVVQIDEALIARRKYHRGHRVREIWLFGMYDVHTNIGVVRIVPDRSRATLLPIIEEF
VVPGSIFYSDQWAAYMGGAIPAIPVIPPYVHHSVNHTIHFVDPLTGAHTNHVECFWKNLKMKFKAM
>AF293351_Aal#DNA/Merlin gi|11321086|gb|AF293351.1|AF293351  insertion sequence IS1016-like [Anopheles albimanus]
MKLKKVAVTKKSDCYKWTCLKTNSCPGSEISVRNGSIFEGSKLLLKDALVLIFLWAQRTPCTGIANVLGLSKPTIYAWAE
TLRGVALETVSSRSAMIGGVGQTVEIDESCVTKRKYNRGRVSDNNQVWIVGGISRETKEFFIEIVEKRDKATLQPIIIRN
VRPDTHIITDCWRAYNGLSRNGFAHDTINHSLYFVDPTNATVHTQSIENFWRWTKHFLATKGTHRGALIGYLAEYELIGK
SANPFLDVLNAIKMNLNAE
>33148937_Hdu#DNA/Merlin gi|33148937|gb|AAP96455.1| possible transposase [Haemophilus ducreyi 35000HP]
MRGFLFSMAQHFSLSAEARHLSIQVDELSDVEILSLLKTARWGNADNINDIECPHCHVRHEAYFIKTRQQWQCKHCCYRF
SITAGTIFHLAKLSLRKILKALRYFALKSKGLSAIELSHEINVQYKTAWGLRHKFREALDKTKDLTPLKDEVHIDGAYTN
YYIRPKNFRHKRIDRRKKRYQREDKSCVLVFRQRAANQAQMKGADRSIVALIKEENTQDVLDLTQRLVKQGSTIHTDENP
AYDSLQFLYDLWRVNHSQEYCSIEGITNNLAESFFARFRRMIIGVHHKMANRYMLYYANEIAWREDNRLKTDREKLNDVL
QRCIKTKPSRHFTGYWQGSKKSPETFGLESINASNDSHYLIAA
>Polinton-N1_NV_int#DNA/Maverick 8081-9490 [Nematostella vectensis]
MDATNSGDKKSSIGKLKVAREGPSQSRTSPTPTTRSNSTTRPGQNNPWSRCGPXSCPTTTSPAKRRKTPSWRTLAPALSP
SATQLAACCDAAAVPALRLGGLFPCCAYTYTYKMIADRVRAAVRMHTRADGKRLLETDTPVAMHRDTHVMARRNGKRMSD
EELDAFLRPIYYARGGFQGVTALHAKLPKGSASIDRVRKWVSSQPVGGYTQTPPPPTTYAHFSEQIPNRIHQSDLLFLPT
DRGYKYALTVVDVASRYKAARPLRTKSAAVVSRELADIYAEGPLTWPKVLMVDDGTEFKGATTKLLTDHGVEVRRAEPGH
HRSQAFAESFHRWLAQRLFLTQYSKELASGETNREWVTALPIVISDMNATKTRMTGFAPKDAIKLRRVPLKAEKPPLEVP
LEVGTEVYIAVNEEDLQDKGRRRATDPWWTSKAYPILKRVMEPGQPVLYYTAYSKHGFTRSQLRSVTLA
>Polinton-6_NVi_pro#DNA/Maverick 6583-7687 via genewise with Polinton-3_NVi_pro, 1 intron (6953:7349) [Nasonia vitripennis]
LRLPGRPLTDSDLVKYAKILKIPHFRGVFMRNDLPxNGPRYNESAVVNLDDASGPGTHWVAYRKRGKSVVYFDSFGNLQP
PTDLMxYLNVNGVKYNPDRYQDYNSFNCGHLCLKFLSNKLNTPHSIGALLGFTQRVLQENxKHSSDLPVAILKVNALRIE
CNITSGAYIxGQLAHTIHEFFPAVPPGYKIIEVPSQVIYLPITVKSIDHLQIRIVDQDGHLVNFRNETITIRLHLK
>21703214_Bvi#DNA/Merlin gi|21703214|gb|AAM76104.1|AF483024_1 transposase  (tunicate) [Boltenia villosa]
ESGRTASVMEELITRHIANGTTIWSDTFASFNGIETLERGYVHKTVNRSQGIHINRIESLWADIKRKFKRMNGVTRHLIP
SYLDEYLWRKQYSTEKHFPEILRAISENPNYRVT
>32029019_Hso#DNA/Merlin gi|32029019|ref|ZP_00132108.1| COG3676: Transposase and inactivated derivatives [Haemophilus somnus 2336]
MLEVTARSAANILGINPNSSALFYRKIREVISYHLALEADDVFDGQIELDESYFGGHRKGKRGRGATGKVAVFGLLKRQG
KVFTVVVENTKTETIMPVITRKIKPDSWVYTDTYRSYDALDVSQFHHERINHSELFAVKENHINGIENFWSQAKRILRKY
NGIDRKNFPLFLKECEFRFNFGTPKEQLKTLRKWCGI
>28262953_Rsi#DNA/Merlin gi|28262953|gb|EAA26457.1| putative transposable insertion element [Rickettsia sibirica 246]
MVYSSFASYYAKKSLSSLQLSRDINVTQTTAWFMLHSIREVTKLESFSISLKSTVEIDETYIGGKEKNKHQNKKTKSTQG
CSTKTKTVVIGMIERNGNAKAQVITKVNSKTIEKIAINNILIGSTILSDEWGACKVLEKLYNHEYINHDLGKYIRESVST
NTIESFWALFKRGIIGLSYSIRKKHIERYLNEFVFRCNHKNYNVSNMFNAILLNTGNYLFYKALVGRYETQSS
>Polinton-1_DR_py#DNA/Maverick 5307-6611 [Danio rerio]
MALLHRMSGECIKSELDLFTVPLTQTAIEKNTYVEVPPLSAISDSSPLEFFIAGSGEEYIDLNNTLLHLRLKITKPNGGE
IADPAKVALINYPAATIFSQVDVSLGDRLISQSSSTHPYRCIIESLINYDKDTLESTFSAGLFFKDTAGHMDVKDPLGNN
QGLLKRSTYTSRSKIVDLMGPIHSDIFFQEKLMLNGVDIKIRMIRGKDEFCLMRSDDVAYKLKIVSASLFVKKVSVAPNV
RLAHAQALLSTNAKYPIDRVCLKNFSIPEGARVSNQENLFLGTLPKSIVLGMTDNDAFTGSYDKNPFAFKHYDLEFLAIY
VDGQQIPAKPLQPNFTDGSVVREFYQLVTATGRHLKNHALSISRSEFARGYSLYAFNLTPDEDCGQHVSLIKSGNIRLEA
RFRQPLPNTINLIIYSVFDSIIEVSNRRQILVDYY
>Polinton-1_DR_px#DNA/Maverick 4005-4844 [Danio rerio]
MDNNGFYVTLPCNASLTVYPENRISSYKTNLSKTIHLKGDWEVALAEIEYPRSWYNITDDDGIFNLNMYPDHDNEEKKKK
LEANVLSDLHGFYVSRRYQIPGGYYKDIPAVIKMINDAIKPSGILFYDELKNKINLIAKPNIFIGFYEKLGAILGVRPEE
GLGQTAYHEKADFTRTVSTYAPHQADIKGGFYTLYVYTDIIDYQSVGDSYVPLLRCVHITGENNDIVSVRYDKPHYASVN
KSIITDINIEIKDDQNREVRFAYGKVIVKLHFRPVKQTSL
>Polinton-1_EI_polb#DNA/Maverick 1601-6271 [Entamoeba invadens]
MPRVTKQDFKNLLNIYYFIHPERDIDMESINTTQDVIKAMFYTEDKLNIAKRVLDTYERKGKTYFKTNQYNLNKLEKAMA
RIYNENNVQRQNVENRYSELTKQQVNIKSKINDVKEQLNKVFNKHIRTSKIRLFRNNEYECIVFREPSDIESFTECLINN
REESHFDERYVHFEEPEVDTSNFKHVKSDIPVVEREIYKVNNLDQLKNIIQQSLQNANKPCKINIGFNYITEEMKLINDE
ETYEYEIKKIENNKLSITKDNIIKNNEDIVNLTTNIEQSIISKADKAKNNLVSSKQVYIGITDIVIIKYNFGKTGLANKE
LEIYTKYRYNIMIANTKSDNLCMFKALCYYYAQTDDKIKNMTYNYKQLLALAKTYYNKMYGFTDLKNTVFNMFQYETEIE
SFCKFFNISVYKYSFDVKTSQLTLLHKYKLEKVKSRMNIISHTFKDGNEHVMFVKDIDKLTGYLFCKVCGIKSFINTKEG
QYKLHIHESRCNGAYDSKMKSDKAAPYCPRIFKDKLYTYCRAHGLTYSPIKYYITYDFETTETTIDNKIDNKTDNETEII
DAILSEFSLAVSNNLYDTINSRYFCKFVLDDKVGTKFQNDVLIENDHFVEDAIQYICDLGKDIQEANIQHFLANLNKPEY
SENEDLLKLLKSRSSNIPVLGWNSEKFDTRFIINHLDHIDANNINILGSTNSCKMLTIKYKSEGSDEEPDTCINIQFKDA
MNYVSPISLDEASKSYGKNEIKVKGVFPYQQLKTENIKEQLLRTEPFKREDFFNSLKQTELSESDYNKYLEDYAKYDNFY
QYTKYYNIQDTAIMFPIIDNLIDLYHQDDQDMLHSISLASLAASTKYLKCYDDFDVDTEYKIYPETEKESNNVYKLSEYD
YKNMVYRYQLQDKLAGRDITNNITNDDFKHFEXIINVGMCKYCNCKFTRTNKPTLDRIDNKLGHSINNVELACNYCNKYV
SNRDQVVAKFMIQIRNYAQFYNLTYNIEDTKVIDLVRKGITGGLSTVHHRRNIKGENTITKLNYDMLNNKINIYDTKNII
THFVCVDFNSLYPSCFSSIENENNPYTDNKMYMPGSVKMSMFDLTEKQQKFARYIINKKEELFIAEVKGRIPNEKMNKCI
NFLPIIRNIDVSLDETVIGTLMYDYMMNNFYKTTNHQDKPIIERKLTQTYNTTYNSSKDKYMIFSSYYLWFLIDEFGFEI
EDIKSFVTFTKHDSFSKFVNEKMNTRQEAILNHDKVRDLFNKIQLNSSYGQDGMRTDNFNKTKIVDKKNAFKSNKSVYHI
DTLKISESRYLTTENNSSYKIITPVQCALFTLDNAKYWYLNFIYNFMNKCLDQTRFHYVEGDTDSMYFAISGADEEHLEY
MDEKCNEQAFKYIIINQEFYNKHVYSWLPYNFYCSDETCKPKLETDQERIKHEKKLLGASIEKQGDNIIALGSKCYTTYN
NEHIDKPISLKIKGVNKNSNKHICSQSYLEVLEKESTIDGTNYLLQYKKITNIDECISKQTELEHNIDRYTKLVLETDKN
TESDIKQTYINILGDLKDQLESKSYLKNIKSSVYKYV
>Polinton-1_NV_py#DNA/Maverick 7320-8567 [Nematostella vectensis]
MYRNPKYVQRYEDVSFDLETPLVSNVANNAHQTLTGYRIVADNSGEIAPLDWYNARFEVNFKVQLLADGGNIAVDDHNGI
VNGSHSLIKEISVKVNGIPVYDNTQADHTVNIKNLLEYDTSYAQTTGTNEFYFLDTSRSAEERAGQAGYNKGFAARKALL
GTSTTVNTEIPLNRYSFFEAFEDKLMPNTKVEIQITRNSDATLIWQAGADCRVVITKFKLWVPRIIFNSGGESMYMSKYL
APHKWTYLREMVERSNSGRAQTGSFKITSGINRPRHVFVWISNDANEDSQTVNPFLYNTFSVANNRTLTSCHLEVGTGNQ
YPESEYQVSSEMSRVFRDVLGYVNSINDYKGGTLLTRXNFGSIFPFIYFDLRNQKADIKDGTTKLTFKYRLSAGTNADYS
VYALVLYEQDKTVFV
>Polinton-1_NV_px2#DNA/Maverick 6124-6903 [Nematostella vectensis]
MENIVERAVYISSRDREARGVSRPDDFTIKMNPSLRLSNDARHEIAVDKISMTYSWHNINPEYGNDSVKYSPDGGATWTT
VTFPSGMYSYHDLNDFLHQDMKSNGHVGVADGKDKFYIDIVFVLTTYKVVVIVGDKYELDIRGTKFGELIGFDPKVISKT
EYGSKLPNITNSIDTLHINTDLITDSIVGGRASNTLFVIPTDNLSRSYPFSVQPTRALFNNVAANLISSMRFYVVDSIGR
PINLNGIEWHMTLILRSIY
>Polinton-1_DGr_atp#DNA/Maverick 9310-9993  [Drosophila grimshawi]
MRLIKQKTNIEVRNIXFKNGEDKQIRHSRLLPNSIRALIVGPSNCGKTNVMISLIESPNGVKFENIYLYSKSLHQPKYEY
LKTLVNPIKGMGYFTFSENESVLAPSKAKKNSIMIFDDVACEKQNNIRAYFCMGRHNNIDAFYLCQTYTRIPKHLIRDNA
NLIIMFKQDELNMKHVYQDHVGVDMKFDEFKNICQFCWKEKYGFVLISKDDPLENGRYRRGFADFIRI
>Polinton-1_CB_polb#DNA/Maverick 10152-13745  [Caenorhabditis briggsae]
MEVEDYSKLTRDQLRAVLGSKKTMNKANIRAMKKEDILKELERLSDQQNQENQDAINRESNYQLRKLFPFDKTVFSEYKE
VGDVLRDTIHTGNSNNIQSFLNKKESDVFKDIYKDSSVKIYFSLSCEMKKEGTEEARLDHLTTTSKALHKGENRKSFYET
VKLDLINRLQQHQGRGSGFRLNRIIGLRMYQTRIRSLSGSKYIELPDWIKNKKAVINIQNKDDKCFMWCILAHLFPVEQN
PDRVSKYKDHVSKVNFDGFDFPFQVKDVDKFEKRNNLAINILVHNVEDDEKINSYKVSKKVNVDVDRVVNLLLVTDNSGE
GHYCLIKNIDRLMNTQNGRRNKFCIRCHNNFYSEEKYENHLSDCMNNSPLQMIKPSKDYIEFDGIQKTQKQRYVCYADFE
SVIYKIDNVSRSPSESWNENFGKHVASAFCVVVVDSFTNTIYDMKSYIGYDTILKFNEYILEVCEKLLSIADMRMQKLTF
EEVESFHSCESCPACGNKFCGDKVRDHDHWTGLYRGPLCNACNLLKRRNNFIPVFFHNLKGYDSHLIISDDKSSELLKER
GVEIKSISANIEKFISFSYHFHDKDRKKYEIRFLDSLGFMPSSLDYLSGNLEDDECIITKKYYNNEHLFHLMRRKGVYPY
DFMDSFKKYSNTELPPIEDFYNSLSGETISNESYEYAQQVWKDMSCQTLEDYTRTYMINDVLLLADVFETFRNVSLKEYK
LDPCWYYTSPGLAWDAMLYKTGVKLQTIKDVEMYNLIEKGIRGGMCNAMLRYSKANNKYMPNYNPEEESKYLLYLDANNL
YGWAMSQKLPYDEFEFINAADFSMEMIENLNSQGKGCILEVDLDYPDSLHDKHNDLPFCSENKRVGTTNKLINDFSPKRN
YVIHYKNLLQAIQQGLVLKKIHRVVTFKESNWLASYIELNTNLRKKAKNEFEKDFFKLMNNSVFGKTMENVRHRVDVKVV
TDMDKVMKLAGSNNFKQRHIVNNNLILVEMTQKSIKLDKPIYVGMSILDLSKYLMYEFHYDVMLPKYSSNLRLCYQDTDS
YIYEIKTDDVYEDMQSMKEHFDFSDYPTDNKLYSIENKKVIGKFKDELNGKIMTEIVAFRPKQYAFKIDDGSEQKKNKGI
KKSVVKKEMTFNDYKNCLENRTIERKQQTLISSSKHEISSVRQNKVVLNNIIGKDKETKRYFVDNINSLAFGHYRIKN
>Polinton-1_AMi_5p#DNA/Maverick 7788..8456[Crocodylidae]
MDMRWKHPFSVILAGPSNCGKSYFIKNLLDHADRMLSVMPENIVWCYSCWQPLYKELLCKYPFIKFVEGLPDSLNDDCLF
PPNKINMVVVDDLMDSACDSGEIEKAFTKYVHHRNLSIMYIVQNVFCQGKRSRTIALNTKYMVLFKNPRDKLQIVSLARQ
MYPGKAQFFLEAFEDATKTPYGYLVVDLNASTPDAFRLRTGLFPPDQPAAYTLKKTAGGNKKR
>Polinton-1_CI_pz#DNA/Maverick 9209-9877 [Ciona intestinalis]
MSEYKKMVLVEPRMLKRGADPPPESETPPVKITPATNSSLPTPPLVKVLSSLDRELSDILGTTLPDDTKVVLYNQVLSRY
IGHNNSRRLNVFTKPTNEKTLRKDFMLELPKNAQTRGSLLIEWLNEHHDVQWNARNEIIIKGQTLPGTNIFDLVGDAVHP
KNEGSRPTGWRAFQQLLKEINIPRMLLNEPTVKSTRRREPTGSNGDAKTTKRAQPTIDRWEKY
>Polinton-1_DAn_p3#DNA/Maverick 7245-7928 (reverse) [Drosophila ananassae]
MDTLQAKRDKATRKKQDHEVIFGFEYFVAQNLKLKCGFSTSRKFTPMIWMQQHKNNYIGIDKEEWMQLLTYKEFIQLKLD
QYDFLMSDTILDHPTLSSIKCSFRFRKSDKQYVLVLNQFGNKIEIDSESWRSLIRLAIFFTTFLCWNTVLKQQITYLYYN
HIIPKCVSLQKFDIQLSDLEGNYDKNVQIDLTRLCFEISKKMTKEIKEDVLHYKKSLISKNSNVNNKK
>Polinton-1_DAn_int#DNA/Maverick 6302-7222 (reverse) [Drosophila ananassae]
MSKHQVVDEIHKPCRKNFLRRRFVQKGIHDTWQIDLVEMIPYSNQNGGYKYLLTAIDTFSKYAFGKPVKSKSAIDVATVM
KSILKNFKYKPKNIQSDQGKEFFNHLFKELMKKNNINHYHTFTHLKASICERFNRTLKNKMWKMFSFNGNYRWITHIDTL
VEDYNNSYHRTIKMRPVDVCKQNEEFILKTCYNIVKVFPKHKYLVGDHVRISKYKGVFLKGYEPNWTTEIFKISKIKSTF
PATYELVDYKGEPIKGTFYEAEIQKVKDKNAFLVEKIIRRKKNQVFVKWLGFDNSHNSWINKTDLLK
>Polinton-1_NVi_polb#DNA/Maverick 3026-6530 via genewise with Polinton-3_TC_polb, 2 introns (4318:4380, 5233:5293) [Nasonia vitripennis]
MEDACVLFMLKIEEALLVHKSIKVDTILAAEYMIVEENKEIVEVKYFNTKSASIYATSDLKEWFAVNVKQPIERDMEEFQ
ERDSGWTLRSILNLTVNMKKFSPMKAASYIELPMAIQKKRACVNVQNQDNECFKWAILSALHPVDINAQRVSKYQAYANE
LNFKDIEFPVSVKQIPKFEKQNDVSVNLFILKKKGSVFNVSCHLTASKKDKHVNLLLVQDTYIDEKEEEQQGNLRVPRFH
YVWIKDLSRLVNLQLSKNSHKKHLCDRCLHYFHDKPKLKAHVVDCLQANMCKVSLPQEKDSVLEFKNVNNKERVPIVVYA
DFECILKPVDDNRAYQEHEPFSIGCYVQYTYDEFKYISYRRKTEQDEDPAKWFVSQLYMLAEELTNMHKNPLPMKDMDQR
SFDCATTCHICGGPFNVTDIKIQDHCHLTGQYRGAAHNSCNLNYKDSRSIPVVFHNLSGYDSHLFIKELANNFKGRVSII
PQNKEKYISFTKHIDGSDINFKFIDSFRFMPSSLDKLASYLDKLEIVDKEFKKEFSDVQIELLRRKGVFPYDHIKSFDYL
NETSLPDKESFYSSLYDSGISDEDYKHAQTVWNAFNIKTLGQYSDLYLKTDVLLLANVFEDFRSKCLHTYELDPAHYYTT
PGFTWDAMLKYTGIKLQLLTDIDMLLFVERGIRGGISQCCNRYAKANNRYMESGYDEDEESKYLMYYDVNNLYGWAMTQS
LPCDGFKWVEDLNCDFFNVPDDAPVGYILEVDLEYPESLHDTHKDLPLCPEHAAPPGSNQEKLLTTLNNKERYVLHYVAL
KQALKYGLRLKHIHRALQFNQKPWLKPYIDLNSEMRKNAKNEFEKMLFKLFNNAVYGKTMENERKRVDVKLVNKWEGRYG
CEAYIAQPNFHSCAIFNENLVAVQLARTEISVRKPIYIGLTVLDLSKSLVYRFHYEYMQERVGDKAKLLYTDTDSLIYEV
SDVDMYAVMKTDLHEFDTSDYPADNQFNIPLVNKKKVGLMKDECNGNIMTEFVGLRSKMYSVKVQGQQPIKKAKGVKSSV
VKSTIEFDDYIHCLRDKATITRQQKNIRSRLHVIRTEKEQKIALSPHDDKRYLIPGQTDTLPWGHYMIDGYQLIEEDEPS
AKRVRLH
>Polinton-1_XT_px#DNA/Maverick 1514-2257 [Xenopus (silurana) tropicalis]
MDEGSFYMTLPSNASSKIYPDTTKLAKSVDLRGPWEVALTEIQYPHTWNTFDPHEGNFVVGKQDDLLKEYHIKSGYYNTI
NEVVKAINARLDSLKIPHEHIKLRYDDLERSVSVSESPIYTFAPGEKLAHILGMDGYIAPYGTSLPKVKKIYADIKAGFY
TMFVYSDIIQHQLVGDSYVQLLRTVEISGKNNEIITQRYTRPDYIPVCKQHFDSVAISIYSDQCKPVKFKYGKCLVRLHF
RPRKELSY
>Polinton-1_XT_polb#DNA/Maverick 7218-11216 [Xenopus (silurana) tropicalis]
MVGGGRLEKFPKLSVNRTKTINRAVKMLISARASLKARAHRRLCCNNANLHATTSTSLPIQSGVLKTHDTPHKSDRLQIQ
ATQQNSGRSNVQDSDQRLCLEAVNADHDQNTGVYLDAIYHQQRDLANFNGVMYIDHFRFINLDRIHSFVDAVNAVHSSIQ
NLLNRTLPDIAPGDFVQLRLEGGNTFDPVYSTKQSSEAFNADTFLNCIANALQSNAECLAGNSLKLVVVVIRNRRGGVKK
RLRAIPYSKIIRGKKQWLYDFNNYTTNLCLAASLYALMDNDDVGDAVLLERAKQLHRVLDIPEDQLVSFNDIAEFENYLN
VNIKILYFSQGRWQFYHTGAASREKILFVLHHENHYYGIKNVKSFIGESYFCERCNSVYHHKNNHGCQQFCKACHRMDCR
DEIGIQPRCFNCRVFCRSKDCLELHRQLALDDESICRLKTFCDSCYRYVCNGDEHKCGGLRCSVCGVRVGKFDTHICYMQ
KCKAQKRCEKYIIYDFECMQETGTHIPNYIYAANLHGSPTWEFEGNDCVQKFVQFFTSGVFEHYTFIAHNAGRYDSYFIV
QELIREKLQIQIINQGGKLLCVTLPDLKMRFIDSLNFLPMKLSKLPEAMGFSGSKGYFPHFFNTEQNQNYIGPMPSIKFY
GTDYMMPGEKNEFMTWYTEHKDDTFNFQKELKAYCKQNVEVLRKACECYRDRIMAMTKKKCTYYCKRKKRRVVVRRYIDP
FQLVTLASVCMAMYRFKFIPLNTIAIVPGDNYHKTQKRFSTPAIQWLLYVAHTENIPIQHALRGGERRVGRYFLDGYAFV
DGKHVAFEFQGCFYHGCPVCYNEADSNDVTNSTYGQLYYTFLVKKRYLQECGFIIRLMWEHEWHEMLEKDEQLKEFIHKM
QFPIPLDPRDALYGGRTNAIKLYHKVEDGENINYYDFTSLYPFVNKTKTYPVGHPKIIYENFGYIKKYFGLAKVKVYPPR
DLFFPVLPMKLNKKLMFPLCYTCALNCQAELCTHSDEQRSLTGTWTTMELEVAIEKGYRIAQIYEIWHFDNSSNDLFTQY
INLHLRDKQEASGYPNWCTDAAKKKQYIDAFYEKEGIQLRADKIAVNPTKRQISKLFLNSLWGKFGQRSNLPHTSIVTDP
DELFKLAFLPYYELSEVNFINDETAAVNWKYSKERYTINKNTNIFIACFTTAYARLELYKLLDRLQERCLYHDTDSVIFV
SKEGDWNPPLGDYLGELTSEVPNNTHITEFVSAGPKTYGYRLNTGKTTLKVKGITLNVANTQVINFDSLKDLVLDYPHNT
DVKTQKTIGTEQSGIVRNKKRWQIETRTLRKTQKCVYTKRQLSNDFTTLPFGY
>Polinton-1_XT_py#DNA/Maverick 2713-4020 [Xenopus (silurana) tropicalis]
MAFVHDSSDECAKSELDIFQIPPTQTSIEKSLYVESQPIAALADNAPLEFFISGSGEYYYDLNNTLLYILCKIVKQDNTV
IGDGARVGFINYPIASLFNQVDITLGDRLISQSDNLYTYRAYIETLLNYSPQTLSSQFTAGLFYKDTAGHHHDRTPNGEN
TGFNKRARFTAGSKTVEIIGPIYGDIFNSPRLILNGLDLKIKLSRNKDAFCLMTADAEHYKVQILQAALYVKRVQVSPAV
RIGHSQALLTTNAKYAIDRVSLKVYSIPAGTRITNHENLFLGQIPKTVILGFVDNDAFSGSYQRNPLCFHHYNISHAALY
VDGQQVPGGRGFQPTFQNDAAIREYMALVHLSGKQKSDNGISVDREEFMNGFTLFGFDLSPDQEPGAHFSLVKTGNLRAE
IRFAEPTPNTINMIVYSVNANIIEINNRREILYDYN
>Polinton-2_CI_pz#DNA/Maverick 7948-8555 [Ciona intestinalis]
MSAYKKMMLVEPRVLENNTTYSLPAIQPQMTSNTPKPSALPTPPIVKVMSTLDSELKDILNKQLPDDEKVGLYNQVLSRY
INHNRRRAAQVNKPSFEKPPLQRDFMLELPKNIQLKGTLLADCIDGHTLPGSNIYDLISDTINPKKGKRALGWEEFQQGL
KDINIPRILTKEPIVTTPKRKKPVVRR
>Polinton-2_AMi_4p#DNA/Maverick 5335..7161[Crocodylidae]
MPRITKPEIGEGYIFYDFECMQETGMHVPNYIFAMELALETPWEGKTQETEQTWEFKGEECLSDFIKVFIDKKYQGYTFI
AHNAKGYDGYFIVSQLLKEKMAVNLITQGGKLMCIEVTSLDIRFIDSLNFLPMKLSKLPQAMGFEECKGHFPHFFNTREN
QNYVGPLPEAEYYGVESMMPSKREQFLDWYRDNRDKTFDIQKELAYYCQGDVKILKEACRLYRNEIMKMTWRVEMVKKEG
KLKHVNLCIDPFQYITLASVCMAMYRFMFLKDQTIALLPPDNYHRQTKRFSTPAIQWLMYLSEKENIQIQHALQGGEFQV
GGYFLDGYAIIDGKPTAFEFNGCFFHGCVTCYNENEWNPLTGTTYGFLNYQTQHKADYLKRVGFTVRTIWEHERRILLQS
DGELSDFLSRAQLPSPLTPRDALFXGRTNAVWLYYKANPGEQIHYYDFTSLYPFINKTKEYPIGHPEIIHDNFGPLSSYF
GLAKVKLYPPRGLFFPVLPVRVNGKLLFPLCRTCAETNQPKCTHTDEERALLGTWCTPELNKGITKGYKVAKIYEVWHFL
EMSNTLFEKYIALHLRQKQEASGYPTWCTDKEKQEQYVANFLQKEGVSL
>Polinton-1_XT_atp#DNA/Maverick 11229-11888 [Xenopus (silurana) tropicalis]
MDTRLQHPFSCILAGPSNSGKSYFVKQLLVNADTLLSHKPDNIVWFYACWQKLYDELSSSFPHIRFIEGLPQTFMDDDLF
PPGKVNLTIVDDLMESASENVEIEKAFTKYVHHRNLSIMYLVQNVFCQGKKSRTINLNTKYMVLFKNPRDKLQIITLSRQ
MYPGKTRFFLEAFEDATSQPYGYLLVDLRSNTPEELRLRTGLFPPSLPAVYVVKKNCSKK
>Polinton-1_TC_atp#DNA/Maverick 248-904 [Tribolium castaneum]
MDLRFKSPFTAIVAGPTACGKTHFIIRFIKHLSLICDTEFERVLWFYDEWQPLYQNNDINNNLQRIEFRQGVPDINEFDG
VKATLIILDDLMREANGSVVDIFTKGSHHRNLSVFNITQNLFYQGKGQRDISLNANYIVYFKNPRDKAQINFLARQIFPE
NIKFVQESYKDATMRPHGYLLIDLKQNTPDDFRIRTNILPDEEPCYVYIPKKNYKYKSK
>Polinton-1_SP_polb#DNA/Maverick 13815-9541 [Strongylocentrotus purpuratus]
MEMDINTNKPCDATSVPGPSNRQPAATAVAGPSRHPASAVAGPSRQPPAVAGPSRQPRAVAGPSRQPPSVAGPSHSQPRA
AAVAGPSSFHVGGSKKRVVDAPPAREPNLPTHHVTKVSQKHVRKYNANVTDYTVSFQPIENNGPMIEMMPRVNEMFENII
EEMVEGVNDRDFVRIVFNSPQLDRPVSMPFVRRDQMNHEAFATKLENTIQSNDKVSLDETVSFNILHMAMPNGGGSNVKC
LTIEETLSRKRCIIRMKNKDNMCCPRAIVTGIARIEKHPNFESIKRGYKQQREYAIELYKQAKLPENTKCGIEEIKLFEK
TEFMAGFRVVVVSKEHLNFITYAGPEDRQHTIYLYVHDNHFDLITSMAAFYNKSYFCHECLVGYDKKLRHDCIFRCKLCK
GDDCPASNDPDSYKLCKKCNRNFKNAHCLSNHKQHGVCDLYFKCPECQILCNRETLRKHKAKHICGQTFCRLCKKYVNPG
HKCYIQKEPQREEKDDSSDEEEDEVRRTLTNEEMEELGLNNATERVMVDDDDDDVTDPGRKPAGLRNLNKYVFFDFECTQ
ETGLHVPNYCVAHRACKHCAEKPFEEECKRCGKLEDKQKVFKGPNTGDEFCEWVFGSKENSRSVFIAHNFKGYDGVFIQD
YLYRNCIIPNLILAGGKIMSMDVSFNQIKFIDSLNFFAMPLSALPATFGVEELKKGFFPHLFNTTANTHYQGPVPDAKYY
HPSGMSPKKREEFLEWYEKEVASGKDFVMEDEIHAYCVSDVDILRQCCLKFRSMFREITKLNPEDTGVDPFSKCITIASA
CHLVYRRNFLNENSIGVIPPLGYAPKDMQSNKALRWLAHVAEQENIYIQHARNEGEVKVGRYYMDGYCLENKTVYEFNGC
FWHGCQKCYSFNTDSGRPGVKKTMGELYLDTLEKERCVQNILKDWKYVTMWECDWKKEENSIPQHIKQSLPNPIPLNPRE
AFYGGRTNASCLLYECKAGEKIKYVDFTSLYPSINKYGSYPVGHPQIITQNFKDLSDYYGLVRCKVLPPQDLLHPVLPCK
VNGKLLFPLCYTCAKNVQQTPCTHSENERIIHSTWVTLEVEKAVEKGYKVIEIESVWHFGKLAQNLRNKRIPIDMIDVGN
LYRANGLFTAYINQFLKIKQEASGWPDWCRTEEDREKYIQNYFEKEGITLDRENIKKNKGLRSLSKLMLNSFWGRFGMRS
NLPNVNVISDPAQLYALLTSDEYRVLDLNFINDEMVEVRYVKNDEFEEQSPRSNVVIAAFTTAQARLKLYDVIDRVGERV
LYYDTDSVIYLERSNRPDEWCPPLGDYLGDLTDELDGRYITSFISGGPKNYAYTTNTGESTCKVKGITLNYSNSQVINYE
TMKQMVKNVGSGPSEKITVTNPHQITRVNKRQRIETRMGRKDYRVVYDKRVIKPDFFTIPYGYVE
>Polinton-1_TC_polb#DNA/Maverick 8242-11856 [Tribolium castaneum]
MNNESFPQKPLGISFRKFSEISSDVILNVIGAVLQSNSTFFSNDQLEIRVDRVRLPTGRGFSALDGKCVSFSEFAVAKNS
IYVIENINNRCLAYALVVGKEYCDNNFNKNSLKKFSGLKGKIILDKIALKLCQDANVDLDSNSGNYTHIQNFQNFLYDYV
IVVYNSRDGRSVYFEGAKSHEKKKINLILENNHYNVILSLTGAFSTSYYCDLCHIRYSRPDRHKNCPYICPCCHSQPPCK
TDSALIKCNDCQRNFRGDICFSNHIRSNVCKKIMKCSKCDKHIWKNKIGKKDEHICGVSYCNVCQQNKPIGHLCYMQSNK
INKNKFDADNKLALFIFYDFETTQDKKFDDKNSTVHEVNLCVMQQACSNCSKFEQLDENETCDNCGLRQNIFFDKPVASL
LEYIAEKSKIFNVYAIAHNMKGFDGCFILQYVFQNVSRWKPEVIRTGTKLITIRCGKSITFLDSLNFIQLPLSKFPEAFK
FEESKGFFPHFFNTNDNFNYIGPIPDKHYYGCDTMKTKERADFLTWHREQLANNYVFNLKDEILKYCILDVNILRKGCLK
FRECFLKINNNVDPFLESLTIASACNLVFRRNFLKSETIGIIPKNGYRCSDNQSKIAITWLSWLMQTENINISHAGNGRE
VRLNGSLLVDGFCQETNTVFEFYGCWWHGCEKCFFNQTSNLNNKHDALFLRRENTFAIEEKIRKLGCNIRTIWECTFRND
IKDNPDLNRFVNEHNLESFTPLNPRDCFFGGRTNVCKLYYKCKDNEKIKYYDVCSLYPFINKYGKYPIGHPKKIYVGNDC
LNIDITTFEGVIKCIVMPPQHLYHPVLPYRYKGKLTFPLCKTCVEISNQYDCGHKPEERQFTGTYVADELRKAVELGYVI
TLLLEAWEYNVVQYNKETNTKGLFTDYVNRFLKMKQEYSGWLSWCDSEDKKQLYLTQYFEKEGIVLDAENISENSGMRFI
SKIMLNSFWGKFGQRENPQKTEIIDDARTLFDLLTNHSRITHNLTIVNNDVLLANWDSVCEDIIPLKTVNVIIAAYTTAG
ARLELYKYLEKLDRRVLYFDTDSVIFTQKEDEWQPEIGNFLGDLTDNYAYRYWVTKERLFKTVCKVKGITLHYKNEKLLN
ILYDRVIARTQRYEVISKEAKKTYRVNISKRRRLNDELYDTLPFGY
>Polinton-1_TV_ptv1#DNA/Maverick 765-1712 [Trichomonas vaginalis]
MNKDDVINFLYPTSKKEKPKEPDVFPEYYEERIKDDEYDEIERLEKIRDEIDEKIKELREVEKYNENEVEGLMNIPASES
EVQKSHEERYKNYVLESTQNLLDGDIDETLSEEGTKFIHKHKLQFIDDGDYPCILLSPPLDSEKFKKALKNVTYATNTIK
KEDHDIYTNYYLNKCTGVDKVFDLLDKISKETIGTYKILCDCGFIIEDTNNVSYERTAPKEDEVERSIPFVIKNIKDMKT
YKHYIYSFISEKMEATHKTSSHHFIAIHTFLFKVVKLNKTGIRFNVSGYAFLSKLKCIRHVADDKNLCVLNSFYGL
>Polinton-1_TC_px#DNA/Maverick 2928-3800 [Tribolium castaneum]
MNYFPENTTTRFCTQLPKTVQLDGEWCVGLSEIQYPCSFLTINNGENIIYCSFQFNVSAIIQKGEKAIDIMFKDPRCFTW
IDEQIRSRKYKSSKEFMYDFKMRKIKFESDVIITKYKTRIEAGNYETIEAVLDALNSLRPLVQDNVEFRLNDGSKKITVT
SSSKYLTSISFSPMLSLQLGFEPDTNVLNKTSTHPANIILGLPSQLFVYSDIIEPQLLGEIMAKVIRIVVIDSKYYIYGT
HHTQLFSHPHYVPVLKREFENIEIDIRSSTGEKVPFQFETLCVKLHFKKIA
>MuDR-21_VV#DNA/MuLE-MuDR 1778-4084 [Vitis vinifera]
MDKGKGKEFIIDLNDEDFDYQYDSNXKTESDEEAILVSEKIFNDLTVEDVWKMEFSSIEEAEEFYNLFAKVTGFSVRKDD
VKRDKNQNIVSRKWVCSKEGYRHRVCLENENRKREPKAVTRVGCEATFRIGFNKQMNKWIVKEFMADHNHPLVEQKNTQF
LRSHRVIKNADKAQLNAMRGVGMGTSQIMDYMVQQSGGYNNVGFTKKDLYNHVDADRRVHLRDGDAEGALAYLCGKSEMD
PSFYYKYNVDEDNRLANLFWADSTSKLDYTCFGDVLAFDTTYRTNAYKKPLVILVGINHHHQTIVFGCALLVDESVSTYT
WVLETFLDAMNNKKPLSVITDGDKAMRKAIKRIFPDSCHRLCAWHIQRNAFTNVHVKDFTNHFSKCMFMEGTVEEFECAW
NDMLEMFNLHGHKWVTDIYAKRSRWAEAYLRGHFFAGMKSTQRCESMNAYLNRFLKTRLKLFEFVKHFDRALSRIRHNEA
KAEFETHHSSAVLTTKLYALEKYAGTVFTRQSFLKFRDEMKNAELFFPVSTENHGGYRVHTLTKFRSPDKIWKVCYGNSD
RSMKCTCMMFESVGFPCPHMIVVMKIEHLEEIPESCIMKRWSKLAKETVQVHHDNESQGDATNIIRYGALSSMCSRMSYF
ASQSEKAFKEARCEIQRLTCQMEELCKNSAEESEREDLKATKHHVRDPIIVKTKGNPGNLKDKFKKPRHCGKCKKVGHTV
RKCPEFVNTHNAFINIEDSIEDMVCSNTHSLNSLIIHFIVIFIWLNWLK
>MuDR-19_SBi#DNA/MuLE-MuDR 641-3431 via genewise with OSMU5#DNA/MuLE-MuDR, 1 introns (1562:1631) [Sorghum bicolor]
MDPGSACRLAIRVNAYVEQRPDGLGDYHVTENWIRVVDKDEFNWMGFHQLLAEDIAHGQDQELQVTYLDKEKNETVRIDS
DSSLLHALDQYWDSRKVPLTVDVVDTYPWDKSAQQSLSVITNPDVCVPLDTISPDIDDDDDEHNDPEPDANDRDEADVEV
DDSDASTDPEPEVQDADWGENDEVEYVGVDDEGEKYNDVLNDDKEDDNPVCYPDTDDEEDDPLKVDDQKDCAGLVHVTDI
DNPIIAVGVTFEDGFCFKRCIRQYAVLNEYELAVPYSESKRYRAYCKAKRCRWRIHASXCQDGKTWQIKKMPHKHKCAGT
GQQQSNCMATNHWVKDRVINWLREDPTIQATDLRKKLQDRYCIKLSYFKVWDGRQMALDEILGGWDDSFVQVFSWKREIE
KRCPGSVVDIEWDIVNMERRFSRMFVALKPCIDGFLQGCRPYLGIDSTVLTAKWKGQLATAVGVDGHNWMFPVAYGVFGS
ETKDNWEWFMKMLHKAIGSPKGLVISTDAGKGIDEAVTKVFNNGVEHRECMRHLVKNFQKRFKGEVFERNLWPASRCYRM
TTHERHWNEMHKACPKATQWLLENHKQKWARAKFSTESKIDYVTNNIAETFNSWIREYKSLPVLDLMDKIRQLIMERFCT
RMQLADKLSGFMILPQVMKELHNKSRNLNYSIHRSGPMVGEVGGVSKDLVPWRFIVDLEKRECTCRGWQLTGLPCVHAIS
FIGTRRIPLEDYVHPYYSVQMFKKAYASAVPPMPGKEEWEKVDLGFKLLPPICKRAAGRPRKRRFIGVEEGGSSTKGKRR
CKRCGGFGHLQKTCNETVHDPDAPPPAPPKKRRTYKPKVIEIIEETVSDPSKKKKKRANKPRVVEVVETTQDAPKSQKRK
APSKGNQANNKKKGTTAAQNDASTTAQ
>MuDROS1#DNA/MuLE-MuDR 853-2331 [Oryza sativa]
MNNYLYTIYVDSEDEEFSIEMHHGGFFMGNGVNRAYVDGRVSWFDHCESDSWSLLWVDDFIEELGYEKSDNTKIYWLLPG
KQLNDGLRRVKCDADTNSMVALVPRVRSFVLYADHQDIVDAIDLEDVAIIGSDPLRTAVKPSKIIRAKSDGGELTVDKRA
TDAKIDDKEESRTEDPDFVDSDYEIDHGDDDLFDNCVEGQIELAHNKVEGSDYGSFEDERLMMPDISEEEEEEIKFSFKS
FRADVDMETPEFKVSMMFVDAVELRKAIDQYTIKNRVAIKKTRNTKTTIEAKYAEGCPWMLSASMDNRVKCLVVREYIEK
HTCTKQWEIKAVTAKYLAKRYIEEFRDNDKMTLMSFAKKIQKELHLTPSRHKLGRARRMAMRAIYGDEISQYNQLCDYGQ
ELRTSNPGSSFYLNLHFGCFHTLYMSFDACKRGFMSGCRPIICLDGCHIKTKFGGHILTAVGMDPNDCIFPIAIAVVEVE
SLKSWSWFLDTL
>OSMUD1#DNA/MuLE-MuDR 546-3271 via genewise with ATMU11#DNA/MuLE-MuDR (1 intron) [Oryza sativa]
MSKFEVLEVQFHFNGEFVLDESKMSYCNGDCGVSHIEKDKISIPELEGHLLDHTTFPQSVRMYWLPFGAELNSGMRLLVD
DKSCLDMIHELGTATTVDIYTESVDMGGNEESGTQYADEDVFALFQDDNIMDLDHAEPIVKEQTIQNRDKFVQGDNMLCL
EGPTHGQDSPNEEAAEDLEAESDGCDATGFTSDEDDEVREIRTKYKEFMSEVKKRGDIPIDNPIEVDGIQGGDIPLGNNQ
VLEGGDGAEYFDSDGDASYDEDSDGVFTRRKCRFPIFDSFADTPQFAVDMCFRGKDQLKDAIERYALKKKINIRYVKNEQ
KRIRAVCRWKGCPWLLYASHNSRSDWFQIVTYNPNHACCPELKNKRLSTRRICDRYESTIKANPSWKAREMKETVQEDMG
VDVSITMIKRAKTHVMKKIMDTQTGEYSKLFDYALKLQRSNPGNSVHIALDPEEEDHVFQRFYVCFDACRRGFLEGCRRI
IGLDGCFLKGPLKGELLSAIGRDANNQLYPIAWAVVEYENKDSWNWFLGHLQKDINIPVGAAGWVFITDQQKGLLSIVST
LFPFAEHRMCARHIYANWRKKHRLQEYQKRFWKIAKAPNEQLFNHYKRKLAAKTPRGWQDLEKTNPIHWSRAWFRLGSNC
ESVDNNMSESFNSWIIESRFKPIITMLEDIRIQVTRRIQENRSNSERWTMTVCPNIIRKFNKIRHRTQFCHVLWNGDAGF
EVRDKKWRFTVDLTSKTCSCRYWQVSGIPCQHACAALFKMAQEPNNCIHECFSLERYKKTYQHVLQPVEHESAWPVSPNP
KPLPPRVKKMPGRPKKNRRKDPSKPVKSGTKSSKVGTKIRCRRCGNYGHNSRTCCVKMVFTEFNFSPCCTIFIPYSFY
>MUTRIM1#DNA/MuLE-MuDR gi|45357060|gb|AAS58488.1| putative transposase [Triticum monococcum]
MEFRNSDEAWAFWLTYSGQKGFEVRKRYTNRRPTDGKVTSCRFVCANEGHRWQDKRDHLTKCPRAETRTECQVFMNLKTD
RKKGNLKVSELSLEHNHTLHLPETLHLMVSQRKISEVQSFEIDTADAAGIGPKAAQELASRQVGGPLNLSYTLRDRKNYL
RTKRQREMAYGEAGSMLKYFQDKVAENPSFQYALQMDCEEQIANIFWADAKMIMDYAHFGDVVSFDTTFGTNKESRPFGV
FVGFNHFRETVVFGAALMYDETFDSFEWLFKTFLKAHNGQHPKTFYTDQDTAMGNAAGEVFPETWHGLCTFHIMQNAIKH
LHEEKNEENNEEKTAGKNGEQNEGKNEDKNEGKKQKKHEGKKKKKNEGKKIEKNEEPSILSDFSACMFEYEDMIEFEQKF
DLMREKVSKQTWLDSIYKVKEKWAECYMKDVFTLGMRSTQLSESLNNDLKIHFKSDFDIIRFFKHFERVVQGKRNNELDS
EFDSRKKLPKLCMRRPPPMLVQASKLYTHVIFEAFQGEFERSLAACTKALDGNNEYLVGDFTYEEEYKVTGDPLKETAVC
SCRQFDRIGILCAHALKVLDLMNIKSLPPQYVLKRWTREARSGTIKDNMGRNVMENPNMAAMLSYRFVSHKFHNLAHRAT
NFPEAITLVDNTLDILGKQVEEIINGCTSTSGDAGIVSADASAPNPNDLLSTARLKKKEVQTKTSRRKRNWLDKKHKAMK
KRQSKATSQVGEEACNDGAHVQSAHISMVCC
>MuDR-12_VV#DNA/MuLE-MuDR 2498-4411 [Vitis vinifera]
MINFFPCVFCSAPTPIVASNSAHVSSIGEPPLHMSNESPTIESFGFSQRCAETNIVQLQPSRFEHSIVGSGHTFPNASEF
RDAIYLMSLAGKFRYSYKRNSPKHMTVVCTIEDCPWKITARAIGDSNIVQVHTFRNVHNHCLEDVALSQPLVRSTRXSLV
IDDVIRSTPEYQPRQICKDFVRQHGIQLTYLQAWQMKEKAKERIYGQPKNYYKLLPWMCERMLATNPGSSVELSYSDDDH
FEQLFVAHSISIEGFVRGCRPIIAIDSAHMSGPYGGALFSATAYDANDSMFPLAFGVMSSENYEDWLWFLEKLKIVVGNK
EVIIISDRHPALLRSVPEVFGLENHAYCYRHLKENFSSFLSKHNTRGNKGKENALQFLDSIAYGRLEHDYNVSMFELKKY
NEALATWVEENAPHHWAMSKFPKQRWDKMTTNLAESFNAWLRIERHHSICNFLLEHMSKLASMLVKHKEESKNWKGCIGP
KIEDKVLQNIAKGEVYPVTPFMNGVFGVCIGRALLNVDIMNRTCTCRGWQMLGIPCEHAAAVIISIGQNVTDFVDDCYKY
PMQELIYGGSFSGIETHDMPSVDDDGLVRSITGEVFFSLKPPHTKRPPGRPRKKRIESQFQDKRTVYCSRCHMSGHNR
>MuDR-3_MLP#DNA/MuLE-MuDR 2374-5451 [Melampsora larici-populina]
IVNDLSLDLKDPRWGKLFRSDKVAKQYLYSVSLNGGYGISVTSSKNNRGCHKTIYFHCHRGNPRKSKATQRITSTKKTGC
QWKAVIKQNKKTGDWVLDQVRNSSTGQFLNHLSHNHEPFQSPNEFSIYRRLDLIQIMLAQKLSRSSIKPRHIMTSLDKNP
GFNPIMKDIYNARQKFRAQELNGRDPITALLDFFIKNKWNYHVHNDDNGKLLSLFCAHPNSIKLALRFPHVYGVDATYKT
NDCELPCLHFVGTTSINKPFSAAFCFMMDETQPTYEWALYRFKLLFEGCDPELSPRLFATDSERALINSIQIIFPDADHI
LCLWHINKNIQSHIKSKSSKINENHFLKLWNSFCSSQTNLDYHNSKDLIKNYLIENHAQDLLNYIEKKWYSQERKFVSLF
TSKLKHFGTGTTSKTEGTHSTIKKDLESTKHDLYSTVKHFQNALDIQYNEIIGSIRHQKSKKLNKFHSIFDDLHGKISQF
AIKKANDQLKLILNSDSLSLPPCNSNFTPTWGIPCAHQISTYLGLVEQPIPIEEFDQQWHLFTEYAPRDLQEIRAKIESH
LEKIKLQDESYLAKFESDLKKLISGRYVLVPVQPPSKSEKPKNKGRPKGAKNKKLKRDPSRFEHVEKEERKRKMKCGNCG
ELGHDKSKCAVKYSTDEDDGYSEEEEDGDDVSNDSDDVKKSIILINSEDLTDIDQTNLNDVSDEDSDDVDDSKSSASSKF
SNDLRVFKSNDLKSEQEEAEMMKALTYNEEIIKADYDNDQEFYHLNHYQDPHKIEEYHNQLLELVRPYVTSIYDPPGDGH
CGFHAIAHALGQHEKGAQKSIRQKMVEDLDIHHKEYLKFYWQKSGSTKAKKSLTKAQIQEKQELATERYIQDISEKIETY
TDEPVSKYNWFESTTMGPIAANAFSRPVVIMSTTHHHCMTFFPFSSKKNSTNKPIALGFVANGHWVSISFSSDSPSPFPN
PSLWKDQHKIWLSMAGRNAAGWTNDGFLKQCFALWERKMEEIEKLKELKEGVTTRSSKRRKVVVID
>MuDR-2_FO#DNA/MuLE-MuDR 128-2829 via genewise with Hop, 1 intron (1408:1460) [Fusarium oxysporum]
MIATQPTKMDQSHRLAFPDDALPPEGIYKSRESLLAAINSWAKPRGYAFTTGKSLKTSSGRIKVIFACDRNKLPPSTSIT
RQRRTCSRRTGCKFSVLAKQSLDGNTWVLSHRPDKEYAHHNHPPSPDASAHPAHRQLNERDAAIISSLTTAGAAPRDIRT
YLHNSSDTLATQQDIYNRIAAMRRDLREGQSSIQALVDQLQGEGFWCRVRLDSDNRLTAIFFAHPDSVAYLQSNPDVLLL
DCTYKTNKHAMPLLDMVGVDSCQRSFCIAFAFLSGESEEDYSWALHHLKSLYHHELPSVVLTDRCLAAINATATWFPSSK
ALLCLWHVNKAILQYCQPDFVLKSADTSGRVEDEKWDEFYGFWHTIVDSPTEEIFRERLAKFELKYAKRYPRAVGYIKLY
WLEPHKERIIKAWVDKYLHFGNVATSRAEGIHSLIKSYIKTSTFDLFDSWQAMRHAVTNQLKELNHIRASQQIRTPLDIS
GGMFEAVQGWVSHQALRKVQEQRKLALASPQAPCSQSFTSSHGLPCSHTLKRLEEEQRSLLLDHFHPHWNLKRGADRPRP
ILEPRRAPQQGIIRVRGQPATSTKREPSGFEISQPGKKAPSTCSRCHAVGHARSSRACPLRFQDLLIQEAPASKSIPQPD
VTPVAVPSPADPIEAISVSQGPSLVEGMPVLECIAEATARSPATAHTPLAQSSHTVQVSLTAPQHSxVPDCPVGTVPGPS
GEECLNHEPSDSRNLPSQPLLRHDSPEAIYGRYVAARSAWYAAQPAGSIKTNQQYRRAMGLPLRYDKQSYEWCLDYKQMS
KRCITSTGSREWTKEEMMAYLDWSKAEDERIEAQVVKEMGKNPLANKRRGMTEIWRKAEMDNIEQETLYAAEDKAELCIV
VKR
>MuDR-4_Mad#DNA/MuLE-MuDR 802-3491 via genewise with MuSHAN_MT_tp#DNA/MuLE-MuDR, 2 introns (1994:2070, 3248:3374) and 1 frameshift [Malus x domestica]
LFKSREELIQWAREVGKVNGFVIVTLRSDQGGKDNRSPRLTLGCERNGQYVSRIHKKRHKXRIEGILERKKCGCPFQLKG
KKLATDDDWILTVVIGVHNHTAAGHLEGHSFAGRLSSEETSLLTDLSKSLVQPKEILTTLKRRDKRNVSTLRTIYNARQR
LRLLEKGGRSQMQQLMSKLSEHRYTEWHRSCPKTNTILDLFWTHPTCLELLHAFPHILIMDCTYKTNRYRMPLLEIVGVT
STDMTFSVGFVYLSAEXEDNYVWALSILRGLMDGIVMPDVIVTDREMALMRAIELIFGTSKHLLCRWHINKNVLAKFKKL
YKSKEDCDRFLEKWNTMVASSTEADFIRQTRQLCNEFSMYQEMLQYVIDTWLNPYKERFVAAWIDKFMHFGNTTSNRAES
SHAKLKRHLGSSQGTFETSWESIHALLGLQHTEIKASFEKSLIVVHHDFRHSDFMELRGFVSISALYMVLKEYELSKMNS
IDSEACGCVLRDTHGLPCAHEIVRYMRDGRPxPLESIDPHWRKLDMKCTPIRNAAEYDYDAEMELFHRRWIESDATARMV
LKxKLMELVLPQTTSLVEPSVTTKTRGRPSKKTDKSTRRDPSLFEIVESEQGSYSLGDLYPEMSSKQKRRPKEKVHRARS
VKPIELTNAFPVALRPYIILVKDVAADGHCGFRAIASLLGYNEDGWVQVRKDLLQELETYSSCYSKLYGSENRVHELKHA
LRYFETHANIDRWMTMPDMGHIIASCYGVVLIHLSDVQCLTFLPLRTEPIPLAARKEIAIGFTNHHFVQVFLKSGHPIPP
IATNWERYCEPWCLEWATPYIARIQQFK
>MuDR-8_ZM#DNA/MuLE-MuDR 896-2962 Via genewise with MuDR-5_OS, 4 introns [Zea mays]
IPKVGMTFSNVDEAYNFYSQYAYEVGFPLKKYRERKNCKWLNCSMEGKNAERVAGNPRIRNTCSKRTQCKAGMKLKKIYD
DAKENVISVRIDLVNYEHNHEFLKKDTEKGQLQCNKTHDREYMEFLSAMQESRIPQHCIMDFVTEMHGGPENVPITVQDM
SNLKKAWQRERNANDVSKLLSFFSLCKKDNPQFFSDFQLDKEGKILSIFWSHASQQAEYIDFGDAVTFDTTHKTNMYDKP
LGMFVGSNHHLQCTIFGFALLGDETVDTFEWVFNTFKTCMGCDGPRVMLTDQDPAMPIALGRVFPNTIHRLCLWHVQNRY
MPHLNELYARFEDMDFKTRFQSIIHHPLNEMEFEAAWQMMLDDFQLHENNTLARLYEIRKDWVPAFFKGDYCGLMVSTQR
SESMNKLVKSAHVDANTPLHQFAKQMMKLLHSRKMKEAKEALGCMGQKDTTTLYMFEIRVARAYTRAVMTRFQETVKYAT
AYRIDRDTEGEEHDWVVKHTTRSNKIVWGQHQFKIRADVDAGKYSCECKHWEHTGLFCVHLVRAFMHLQIERIPSEYILQ
RY
>MuDR-5_EPa#DNA/MuLE-MuDR 986-3542 via genewise with MuDR-7_VV_tp, 2 introns (1743:1883, 2296:2444), 1 frameshift and 1 stopcodon. [Eutrema parvulum]
MAASVVDLYGQRIWYKLPFEELKELKILCDGSPNFHNMCKAAAWTWAIEIYMEHEDAHNEEEGENTDSGNRPANDANNPE
ENGDVCFNQASRVEAIVAEFVDEEEENDLHRDTSPTSDAEDEHNSIPVERWRRESGELKIMQVFESVVEFKEAVLEYALK
GGWNIRYTRWGSEKSEARCAVKGQVPCNWRIYSSFEESLGMWMVKTYQEEHSCSPDGYCKLLTENVIADLVINDIRNDSG
LRPRAIQALIQELCFHLARCSHYANRTNLGSTVDLITATTDDGIEVFDSIYVCFNALRTTWLQHCRPIFGIDGCFLKSTT
KGQLVAAVGRDANNKIYPIAWAVVKVENTDSWRWFILRLKSDLDLKDGDGFTLISDKQKVSNLGRFMKFRTWLLIXQGLL
KAVELELPSVEHRTCARYVYNNLNKVHPNKLQMKKLFRAVSDSFNKADYIAALKKLEANDGQIHEDLLLRNPSTCSRAFF
NTTSTCEDALNNFSEAYNSGLEKARSLLLVEMLETMRRQTMVRIEMRKNRSSKHKSKYSPKVSKTLALEKAQVKWCKRIP
GPNGTSEVSEKGTAYTVNILEKTCSCRKWDLTGIPCRHACRHALCAEDYVADCYLTSTWREQYSDSITLVEGLKFWGSSS
ASRLQAPPRDVNKGRRKKPEKRKKSISESPTKGKKLSRHLKIIHCSRCGFNGHNSAACSNVGVPKKPRNVYKRKRSNDVA
DSISLDFGEGPSQSQPTQTSLDTExGIQVFNCSFFYFFSY
>SHAMUDRAV_MT_p2#DNA/MuLE-MuDR 2543-1824 Reverse Matches MDR1_p2, MuDR4_OS_p2, MuDR1_ZM_p2, MDR2_p2. May exend into SHAMUDRAV_MT_p3 [Medicago truncatula]
DAEGAPLVTRTRQHIIPSPHIEEYLRQTGFFEVSQIGRYKIDRHIVTALVERWRSETHTFHFRTGECTITLEDVYMLLGL
PFCGPFVTAPPNLAWNICAQLLGITPPANKTDGFTLSLSWLKDNLVDNNFSEQSPPEVKIQHTRRYLLYLFGGFLFPNTT
GLFVHNSWLYLLMDFNLTRNYSWGSAVLTYLYRGLCEASHPNIKALTGCHFLLQVWGYCRLSYIAPKNDNPLQWPLGLK
>Rehavkus-2_CS#DNA/MuLE-NOF 2930-6142 [Ciona savignyi]
MFLIGVGDALITLSNLIIESCIYSVVFMTLFDSESVLQAIHSMEHFDSSSFHSWELLSDKLCKRNLSKIERKNDIKSLKY
LYQKYKDENNLHSSTVSAYPMDFSNDRDKNKTTNTSNSSNLISSSNSSASQSPEHVSSSEVSDIDDEMEECELWRPSPPL
VRSSVFTLDENDWNEVRASVSGGRVKTKNWGDIFRRSLKSSNPFCVFSFMSHHWNEKRTSSRVFNCKGVCKFKTCDIKIE
INLYSEMKKEFHVTYTGLLQHGKLEVRSSHLKGQRRQEMRKELANVNTRAVYLNNLRQLPADVFESGNRDCAPSKSVLKK
VRFQARKIEVASENDTIALETLKNAQSIDKDHSQTLQVISSTPPAIMLWSDETMRIFHDRSQTDIVYIDATGSIITSEKG
KRPYYAYEIVVRHPIKGKCPLAVATYVAEQHNIASICNFMSMFRSAENRVVGKTLAKLFICDGSMALIRSILRCFMDDSL
EAYLTRCFSLVTGKATDGTFSKPFLHLCGSHTMKNMKKLSGLVRFRRQETMYILGLIMCADTMSDITDMLRHIVILFSTK
NESLSNFSWNFLSQKIKRETKMDESFFSVDDDEPDDDLTPEFTNCNQFTKYFSSVISQARNEAEFSEVSGTNPFYCPELI
TKFIENWLPKLPLWTALTIGNLGRHGSSDVYKANCKQFIKLSKLNEQNLTRDNRTQGIMEKSQQELKRTRCHGRRFKGLG
EFAKIYHDEHNGLIREFQDGLKSLRKRKQTNSQPEQEDQERWGKRSKRGDNNVGKYLQPPTKSLRGPSNSNKKGPSLVLD
HLSKEECAPTGLPQRRSASKIEPIFAVDEAALKMLTKRRKWLDDRHIDATMFLLRQHFPNIDGLQSCLAYPNSFKSLTYT
PRNKFVQIMNIHGDHWVTVSNKFSTDNSTINIYDSLPSELSKTDKYNISTLLNVDSTKLTLRFPKVPKQVIGSGNCGVYA
ISFAVALCMGLNPENLVYPINRLREDIKGMLEKRQITRLFSETSCKTKQLKAQNSSLKVDLFCHCRLAGDDNGYIQCSRC
DGWYHFSCTRTSIPENVIGSNVKWYCDNCVL
>Rehavkus-1_DA#DNA/MuLE-NOF 1424-4531 [Drosophila ananassae]
MPSKTHIDVSEIVDTLCLFNIFENETGALKSRNDSVWKEASDRLKTKISAPTLNVYVRINRNNMLTLIKRRCGITENSIN
ETVNSTLPEDDPEFQISEVHGNGPLPNLFLTLELDEEVWGSIAPIKGKNEEVKDLRPKNYLQPGWTDIIAKALQEKVPLP
CAFNFKKAKISGKEENIWLKIEGYCSECSSLFKGHCLVEPDPNLGISISVTVPDTRGIPHNQKRRCTGLKRLAIGHELLH
KKASLWRKEATKEMKDGDPEPSYIPKLPTLRKLREEAINRSLGINKGHDPISALYLKKYEGELAGCILDIGLDEFYCIYC
TPAQIKTYNAQIKRVRKISVDATGSVVLPIVKPHGDTSYVFLYQVVMEGEDGICPVFQMLSAKHDTASIQFWLSRFMSKS
GIYPPEVVCDFSLALLNAVSLSFNDCRLHTYMSSCFEALSCESSRIPRSYIRLDIAHLIKMMCRKNVFKGKLPNVKDFYI
RCIGVTTTCETKKSFKKILKSILIVATSESSGLNKEGENYASQNNENFLLQKIATFTAPEYDEDYENSITNTPEELEPEG
ENEGINEFIKNILRSAEKKASKCKSSRSRPNPYFLPELVKPLIKLSQYFILWTNVMKNKFTSNYNVGSSALVEAYFKDLK
KSDMSIFSRPVRADKFVTQHIRCIEAACKLERAATKRKTMKTPAFIEDKKLKLDDKIDAGHLLEEENWKIKNKAKNTQQL
EIEDEEKPRGKYLKKCPNLEMIYNRPYRRKKDAILQNGGALGPIWIEEKSINLKNTCPFDSLVEILATAYMDNIYYKRAI
DEEKDNSIILFSKKYAIDGISGELYCDRGRILTKIFSEYNSVVYCEANIGTFIKKVMEGIPSLQKKNVHENGNQSCNNMI
NCLECLELVDAEKISSLGVHDGLIATILDYFAPKNGRCKDCGVSTISHAQPGPHVIIDMEFAFDSFQRELYANAPGSATL
QQLPEKIKLQQKTYILSGAVEYVPVSGSGIGHYIAYCRRITGLWEAHNDFTKQAKHFTATNTSMKIHIVFYTEADV
>MuDR-1_HM#DNA/MuLE-NOF? 1666-4119  [Hydra magnipapillata]
MQQVFDMFPEVLMIDCTYCTNKLRMPLFTLLVEDGNGTGQAVGYAFIAQETENTLQDVFSEIELILNLNQVKVVILDKDL
KEIGAVSKVMPTAEIQLCKFHVLQAFYRFLNKQGLASIEKDNLKKIFKSLVYAKSKKLFDINLGHLATVAPEVVMAYYNK
NWGLPHQVKYWAYYETIKYVNLGNTTNNRSESHNQKIKNILSRKMSLAEAVKGILLLHTCKFEQMAHIEFNQSFKEPYRL
GTDEDVVTDDIVKVLTPYAAGIVIAELKKSRTDLLVLNKVCSCPLQVTMKLPCRHTMAVKIVNGDAIFKAEDAGERWHLS
YQKKSWLSRKTRSLHNQANNVFHFSTNKTEKKALKVPFSKDQKFKTVMNLCKPISDYLSTLGMNEFEEKIDSLNLIYKLW
LAGKKVIISDMEAQALPEISNLPKVSALPEISDLPEMSDFLETSELPEMSDLPEMSSSPNFSESLFSALPSSLNLNEQLQ
NQGSVLSPNQSSLNDSVNFKDLPTTKSECCTGQAINIFNNLANVCLPKVPPVVGNVKIKKARLKRKRDLYNDPYHQSCQR
ILGKTAHKEQLLKKQLSVIDLQLFSIKDSFEMLSDLHINKAQKLLSMQFPDVKGLQDPILGSKLHFRVQSGKFVQILHNG
AMHWLTISNFLSTHLNSVDVFDSLYYDLSVSGKMQVGSIMMVKEPFLKLQFKDFQKQSGGLDCGLFAIAAATDLCYNYDP
SIKCYKQELMRDHLLKCFSDNYLTPFPIETNERKKKKQPKPINLPLYCICRLPDNKEEKMVKCDNCKEWFHVSCLSIPKN
IFDNSDNSLHWHCNSCS
>KBOC_DB_tp#DNA/P gi|28630150|gb|AAM94946.1| putative transposase [Drosophila bocqueti]
MSFCEFCCAVVKTEGVKFIRVPKEDRKRKLWEESLGCSLAHNARICDTHFKGSDFYGETKTKEERKRRRLMPNALPRQPT
PEPESIPTVKPGYSNAYTQTDIDLENFKLKQKISELEKEIHHLRQQLSESDALRQGLTKIFTQNQIKMLPNCGKRIRYNS
SDMSEAICLHAAGPRAYNHLYRKGYPLPSRATLYRWLSEVEIKTGTLDIVMDLMKNEDMDEADKVCVLAFDEMKVSAAYE
YDSAADAVYKPASYVQLAMVRGLKKSWKQPVFFNYNTAMDACTLKAITTKLYKSGYIVVAIVCDLGPGNQKLWREFGISE
ENTWFSHPVDPALKIFAFSDVPHLIKLVRNHYVGSGLLISGTKLTKNTVQQAMNCCSSSDLSVLFKLTENHINVRSLQKQ
KVKMATQLFSNTTASAIRRCYELGYEIENACETADFFKMINDWFDTFNSKLSTANSLKYSQPYGLQHDLQKDILDKTSLT
MSGKIIEKSQRRLPFQHGIIVSNKSLDGLYIYLKEKYNMEYILTSRLNQDILEQFFGAMRSKGGLYDHPTPLQLKYRLRK
YITAKNTELLTGKGNVEDGEEEEWLNLGDIDEMTEDAIEYVAGYMIKKLKLRDMSNKDATYTYVDEVSHGGLKKPSSQFV
EQLKKLEAIFQLYAKEEFDLQINVKRTLLNAAEKLNVPLDIKQLFFKCRIYFRIKHLNKKLAIKNQKQRIVANSKLLKIK
L
>161158_Spa#DNA/P gi|161158|gb|AAA29957.1| ORF 3; 5' end undetermined; putative [Scaptomyza pallida]
VVMWCLMCFFQFYYLIIIFILYPAKNTELLRNTGNVEEDNGDSWLNLDFSSKSLKKKKNKPEDVEPEDVETEDVEPEDVE
PEDEEQCIANNIPADIEMDELTEDAIEYVAGYVIKRLRLSDCSKQSSTFSYVDEVSHGGLIKPSDEFKNKLKELEIIFSH
FSKDNFQVTNNNFKVTNNLKEKLIIAAQNVELDKLVISFYFKIRIYFRVKHLNKKICIKNQKQRLIGNSKLLKIKL
>Rehavkus1_AP#DNA/MuLE-NOF 483-3092 via tfasty with NOF_FB, 3 stopcodons. [Acyrthosiphon pisum]
PSNIIKHYTFKKRKSPANNLQNNILLSHHYSCGLHNIMYYxFFNENEYKDILHDLSWEPFYIHYHSGEQMHVYRSYCQST
SYPKIIIDATGSLIKNFKKFGMNKTKTIYLYEALVYDESKLHSFTVSNMISERHTTLAIYNWLANWLNFNVPSPRETVCD
QSMALLSACVKCFTQYSSLKQYIRVCAKLALGKLSPDPIWLLNCFIRTDVAHFIKLVSKWVPLKNTQGRVKEVILRSIGV
IIKNQSISEIYSIVLSLFVVLTNESDGINAETGRDTPCEYHKKKIIxITSTGFVNYEEWYNEVFSTVDSEEEIRDFIEED
ETKNIDLDNDKNSFQSWAEEIFEKSKEYIEEGNGINVMYLPKLVPLIIKCMHFLPLWSGFMIPIFKYGKLTASSAGVESS
FKKLKIVTFKDMDLPTNIDLFLERHIISLRGNSLLRSSNYTHTSDNFQEVIPINQTNELHEDDFIRIDENNINDIIMDIE
NEIPIKKSITVNSNNCEENTAKEGWDRKSKRQRITNSYLNSNSHLRHIDLNNSRSMTSLPNLKNGSKVTDLKTRNLKDYG
KVAISNTCAFDTLASIFMVAYCTSKRYTEEINCLDNTNEFLSFVSSIVKKGINPTTYKERAQIMLSYLEPEKTKIDYDIT
LVSCHATTEFVIKKLFLDIPTAFDYTLCxNPKCDYSTENQKPVTYVTFHTENSLDGLQNFLLERLSIDYLTCGHINQYQT
HPCSGDKTIRTEASTKHLFIEILKWEGTYSKYINKNITYNHYIQLFMLSYFLITGDITFYQDQSSEAAPQLKIPLKDIPQ
VLTHNNTTYELRGVCDYRKGLSRLRTSVGHYVAYCKRGPNNWELFDDTNKKSKAVSQNTEVLCELLIYTV
>Vandal8_tp#DNA/MuLE-MuDR 697-3174 [Arabidopsis]
LQETMKNKHTFIQFDNGYYSEEHEWISNNSLSGVLLRTSKVTYSMLVEKICKKIGIDETSRKVKLSYILCTSQRETSIVD
DDDFLGYLTVVNAKGIRPALNVEVVNKESERVEQISRVERRSSVGVNYEELNAFDVENGGVVTIFRGETAGGNCVNDEPI
IEEANSVEEAIENADSRVFEEAMENVVIEDREHVDSRMDVAEDNGVDGRIEYYELPCVGEGSQSSEKSQSVTEWEDGTGI
ELHQEFVSKEAVQDLVNRAANKYCFATATIASDPQRLMLRCRQSKTTGCRWYLRCAKVKSSDCFSVRVHRKMHTCKRSNK
NSGNCKHTGTPRLIASILHEDYPGEFQTPPPKSIMSIVRGRMGLHCSYATAWRGKRQHVSDVRGSPEKSYTDLYSYLHVL
KEVNPGTISYVEVDAQQKFKYLFVALGACIEGFKVMRKVVIVDATFLKTVYGGMLVFATAQDPNHHNYIIASAVIDREND
ASWSWFFNKLKTVIPDEPGLVFVSDRHQSIIKSIMQVFPNARHGHCVWHLSQNVKVRVKTEKEEAAANFIACAHVYTQFE
FTREYARFRRRFPNVGTYLDRWAPVENWARCYFEGDRYNIDTSNACESLNSTFERARKYFLLPLLDAIIEKISEWFNKHR
KESVKYSETRGLVPVVENEIHSLCPIAKTMPVTELNSFERQYSVIGEGGMSYSVDLLRKTCSCRRFDVDKYPCVHAIAAA
RNFVGTEWILDGLEMEDLTSHYYHMNTWILAYHRTIYPVPHSSVWIIPDEIRQLIVLPPDTTTKPGRNQETRFPSTGERR
RKRTNNKFQPGININAWLQPEESDS
>Vandal1_p3#DNA/MuLE-MuDR 8611-9306 reverseORF [Arabidopsis]
MVNPTISDDLLAMIAKKVADKSWLDLKPLIRSGTRGRDIVYRPDVLKDANIYSLCRVPDDFQVGGGHNPTGPQGEGRNRP
FFKRCLLANNPTAVYNEAIRVLIHETDINGALKLMQRHAPVRADATIACAIIFICAGYDYMGGLFLDLYTRNHHPLESDF
XRDLCEEFLEEINKFNPPYNNTYARSFCYXXSHGIXMPQCAYHCFMVSSAYQNVCNKCYLWSCARRISRML
>Vandal16_tp#DNA/MuLE-MuDR 744-3976 4 introns (genscan + genewise with Vandal14) (Vandal15 very close) [Arabidopsis]
TAGQDEVLLVIGEWVRVDNLAWQFEPKTVEGSSFIRLRTNMTYEELSQKVKDKLGLRGRGITVKMAYQFPEWMAIDEGNG
SPPQYISEDSDVTMFIQMRRHIEEVNLCVTVVQHTIPSSPVAVTDKNFNSEDSDDSDYDSEEELHQFALDSAVLGPTLEP
TAATTETEQHRRTRRELFPTGGISIREPEECIRLKSPDCLPTDKGKGIMDPIGKKGKAGPSRATVTDTSTDSDDDLLIVP
FTLPPNPPAITIPENADIEGADSSRAAVGTPHGNHVSPIGNAVAETDLQRQNILFWGRAQEALNTILSDFSDDPILFGRD
APPVFNDGKGEGVDSAFFDVKYEGDKLFVGRVFKSKSDCKIKIAIHAINRKFHFRTARSTPKFMVLKCISKTCPWRVYAS
KVDTSDSFQVRQANQRHTCTIDQRRRYHRLATTQVIGELMQSRFLGIKRGPNAAVIRKFLLDDYHVSISYWKAWRAREVA
MEKSLGSMAGSYALIPAYAGLLQQANPGSLCFTEYDDDPTGPRRFKYQFIAFAASIKGYAFMRKVIVVDGTSMKGRYGGC
LISACCQDGNFQIFPLAFGIVNSENDSAYEWFFQRLSIIAPDNPDLMFISDRHESIYTGLSKVYTQANHAACTVHLWRNI
RHLYKPKSLCRLMSEAAQAFHVTDFNRIFLKIQKLNPGCAAYLVDLGFSEWTRVHSKGRRFNIMDSNICESWNNVIREAR
EYPLICMLEYIRTTLMDWFATRRAQAEDCPTTLAPRVQERVEENYQSAMSMSVKPICNFEFQVQERTGECFIVKLDESTC
SCLEFQGLGIPCAHAIAAAARIGVPTDSLAANGYFNELVKLSYEEKIYPIHSVGGEVAPEIAAGTTGELQPPFVRRPPGR
PRKIRILSRGEFKASTYXTRSQRRCSRCCGVGHNKASCRNAI
>MuDR-4_HM_p2#DNA/MuLE-NOF 6829-8592 Via genewise with MuDR-1_HM#DNA/MuLE-NOF, 1 intron (8403:8472) MuDR-4_HM does contain matches to MuDR transposases at 5567-6148 [Hydra magnipapillata]
MNIISFSYTDSNFKMDARYRRYARWVPSYLYNRPHSFVKHCLIKKSNVENLDLSGVIMIKHGVFAVLSSTKPATKYFVSF
GDEITMPKCTCLNWISTAYPCKHFFLVFRKYPAWSWSALSSLYLSSPFLNLDADDYEASHEKPPFSRPESSILPKKELDV
INDWNEKSKKITSVCSGVNVREMLTTIQNLTYEFEENSEEIVLVYSTLASLIKKLEKNRTKESGIPLSPLDIKLPCHLKR
NIPIPVRKPMKLPTDRVGNHKDMVIASSKIFLEEKKHKTEPIEVDIIEHIDGNSIIIDDESVTINENDGFEIKRLNHLSP
NCNLSSNDLNDILTNQMLSDIVIHTMQKMITGVGGLQDPVLGQNLSFRVQKASFVQVLHDGDAHWLAISNFGCSVGEVFL
LDSFFRGKVKNHVVRQICAIMHCNEDKLTVRVVPVQQQTNYVDCGLYALAFIKHITDTRSNPSYVAFDAFQMRNHLLKCV
KGNQFTEFPKSETAMRFCKEKEFNFSLYCICRQVWLASDSCIKDRSML
>Vandal21_p3#DNA/MuLE-MuDR 7869-5120 (reverse) 4 introns [Arabidopsis]
YFRSISDSKSVMPPKTRGGGQGKRKEIEASAPAKTEKVKAPAEKVKEKVPAKKAKVQAPAKKAKVQAPAKKAKVQAPAKK
DKEKVPAEEQSPAQTTATAMATNAAPTTAAPTTTAPTTAPTTESPMLDDSTFYDALKHIPAEEIQENMQTDEVEDENEKE
EASEEEESGSSSRTLGSDSDSEETETNKELACANPVEEAERQDDGLAVIEEEEERSSASDEDVNVEKSVEDEGDEDERDE
DVIVEKPVEERTIDEDIANVDMEEAMAMQPLGMYFPASEYTKKMKLATRCYISEVLKTFADLEHPLTDVEKNYFMEHPSF
KHIYHLPSGYTHKLMGMWMLFLRTASIEKKKEVWFVVNGVPIRYGIREHALISGFNCKAYPANYQSAGNMNFANRYFKTG
VIRREDVKTKLMEMEPARSKDRLRMAVLYFLTSIIAVPTKTGERASPIDDFCVRAASDLTFCKTFPWGRYSFEYMLKSIS
HTLDHFNGVVPNTQSPWPVPGFCVPLEFLAFEAIPSLRERFIEEKEGAHAGCPRMCKVNFKRTEMKGFTLEQINHVLGTT
EVIESIIREKAEEVPLLAEITGVEDDVDKHDVVVDSWMKRLGQGREIRFEEVYNEDVQARMEAPNEEEVPTAVGPGDPTL
VDVMEKLHSINDKLNEALLALMEMEEKQATFEAFMDEMKAKMSQNPPDEEESTIKENAAA
>27377274_Bja#DNA/MuLE-MuDR gi|27377274|ref|NP_768803.1| bll2163 [Bradyrhizobium japonicum USDA 110]
MNDGNAMGQVIQIDEARIRDHLGEMVRGTVEETLNAMLEAEADQLCGAGRYERSPARQDTRAGSYERTLQTKAGDVNLKV
PKLRRQTFETAIIERYRRRESSVEEALIEMYLAGISVRRVEDITEALWGTRVSPSTVSNLNKKIYAKIEAWRNRRIEGEH
PYLYLDGIVMKRSWAGEVRNVSLLVASAVNAEGFREILGICEGAKEDKSGWSSFLRHLVDRGLKGVQLVVSDACRGLVES
VADYLPEARYQRCMVHFYRNVFSHVPSTRVHEVSHMLKAIHAQESRAAADEKARTVIADLRASRMAKAADLVEQAVHETL
AYYAFPDIHWRKIRTNNPLERIMKEIRRRTRVVGAFPDGQSCLNLAAARLRHIAGTAWSTKCYMNMRPLYQPQLSETGAV
A
>27228664_Pre#DNA/MuLE-MuDR gi|27228664|ref|NP_758714.1| transposase [Pseudomonas resinovorans]
MTVVKRTKRAKPDPELVKLADSLLVNYKKPEDLIGENGLLKPAHQDAGRACAGSRDDRAPGHGKSGSIFNAGGNARNGHS
DKTLKGDFGELPLAIPRDRQALFEPQLVAKQQTRWTGFDDKIISLYARGLSVREIQGHLEEMYGTEVSPTLISTVTDAVS
DEVKLWQGRPLDPLYPILYLDCIHVKVRDAGAVRTKAVYLAIGVNMDGHKEVLGLWIAQTEGAKFWLQVVTELKNRGVQD
IFIACVDGLKGFPEAIETVYPKACVQLCIVHMVRNSLNFVSWKARKEVAADLKLVYTSATVELAEQRLTEFEEKWGGQYQ
SIGLSWRRNWARVIPFFDHPAEIRKVIYTTNAIESINMSLRKVIKTRASFPTDEAVSKLFYLALNNISKKWTMPIRDWKA
ALNRFSIQFEDRLMQD
>27802457_Ppa#DNA/MuLE-MuDR gi|27802457|gb|AAO21373.1| putative transposase [Paracoccus pantotrophus]
MSGSTITHLPDPSGFSSDPLTDLVRDGARQLIRQAVEAELAVLLERHAADRLDDGRARLVRHGHLPEREVLTGIGPVPVK
VPRVRDRGAGEDRISFTPSILPRYLRKTKSVAELLPWLYLKGVSTGDFSEALAALLGPQAQGLSAATISRLKADWWNDYE
AWQRRDLGMRRFLYIWADGVYFKPRMAEEKQCVLVIVGADEYGRKELLAMTDGFRESTQSWRELLLDLKRRGLKQDPKLA
IGDGALGFWAALREVFATTREQRCWVHKTMNVLNALPKSLQVKAKGHLHDIWQAETKVQANAAFDYFIETYGVKYEKALA
KLVKDRDALLTFYDFPAEHWKHIRTSNPIESTFATVRHRTRRTKGCLSRKTGLAMAFRLMMSAQKKWRKLDGQNRLPEII
QGIEFRDGLRHLQAAA
>28848570_Bme#DNA/MuLE-MuDR gi|28848570|gb|AAO52770.1| putative transposase [Bacillus megaterium]
MNQFTTDLVQALVQKENVTEIFRSHLENAVNTLLASELTAFLDYEKYDRIGFNTGNSRNGSYERTLHTEFGELHLVIPRD
RNGDFKQQTVAPYKRSNDTLEAFVIHMFQKGVTTAEIAHLMERMYGHHYTPQTISNMTKVMSEQVEAFRDRTLCARYACV
YLDATYIALKRDTVSKEAVYIAVGIREDGSKEVLGYTIAPNESAFVWKELLEDIKSRGVEEILLFISDGLKGISDSVFSI
YPASSYQTCCVHLSRTIAHKVRVSDRAEICEDFKSVYRAESLEMGQQALHSFIEKWKSKYPKVTKPLLNNSYLFTFYSFP
KSIWRSIYSTNLIESFNKQIKKYSKRKEQFPNEESLERFLVSQFDQYNQRFATRCHIGFDQARAELQMMFKTN
>27881402_Cce#DNA/MuLE-MuDR gi|27881402|gb|AAN06002.1| transposase TpnA2 [Clostridium cellulolyticum]
MSEKIIQLNEGIIKEELKNLVRSSVEETLNHLLDKEAEDLTNAAKYERTQERQGYRSGHYTRSLQTTSGEVTLRVPKLKG
VPFETAIIERYRRRESSVEEALIEMYLAGVSVRRVEDITEALWGTKVSPGTISELNKKAYVHIENWRNRPLQDGKYPYVY
VDGIYLKRNWGGEYENVSILVAIAVNQEGYREVIGAREGMKEDKASWKEFLQWLKGRGLDGVKLIVGDKCLGMLESVNEV
FPEAKYQRCTVHFYRNIFSVTPRSKMKLVAKMLKAIHAQESKASAREKAKLVAEELKSMKLREAAKKLEDGIEETLTYME
FPYEHWTRIRTNNTIERLNREIRRRTRVVGTFPDGNSALMLVCARLRHVAGTQWGSKKYLNMKHLENMDSDESDFIAG
>23577976_Cef#DNA/MuLE-MuDR gi|23577976|ref|NP_702924.1| putative transposase [Corynebacterium efficiens]
MAAGPYSIDPTTYLDELLAQASPDLMREMLQGFINQILSTQADQVCGADYATVSESRTNVRNGYRHRDFDTRVGTVDVAV
PKLRTGSFFPDWLLERRTRAERALTTVIATCYLKGVSTRRMNDLVATLGINSLSKSQVSDMAKDLDVMVEEFRTRPLDTG
PYLYVSCDALTMKVREGGRVVKTSVLLATGVNSEGYRELLGMQVATSESVASWTGFFRDLKARGLNEVYLVTSDAHLGIQ
HAIGEVLPNASWQRCRTHFSKNLYGMVSKTQWPTLSAMFHTIFQQPDAQSVWGQAREVVAFCEQKFPDVADYLEEALDEL
LAFTNAPKSVWTKVWSNNPTERLNREIRRRTDVVGIFPNRDAVVRLVGAVLAEQHDDWIQQKRYMSLTSLEQTRAMMTAN
IIDADDAAASEVMRREVA
>Merlin-1_DT#DNA/Merlin 299-1305 via tfasty with Merlin2_SM, 1 frameshift and 1 stopcodon. [Drosophila takahashii]
MDSCNGCTISYKDFLAMDEEEVFAFLQRHGVVLKSKDCPNCSKPATLSFNAKRPISTPFWRCRRMISNHQQKRKLRKVQC
SFKCNNCLIxKNIALNYICKESAIKRTFFSKSHVGIEQACNFVAWEMKGSTISFLREELGWSQQTVVDWSNFLREIYLSW
TKKNAKQIIGGDGLTVEIDETKIGRRKYNCGRVVDGQWVFGGICRETGDFFLVPVEDRSQETLLPIIEANIANGTRIISD
CWKSYNGLKDANYSHMTVNHSVNFVDPETGANTQRIERLWRDLKENIPHYGRKTEHYQGYLARFTFLKRHPNHTSRFHAI
FSAMGELFNPERDVSI
>IS1016_Nme#DNA/Merlin gi|15677996|ref|NP_273660.1| IS1016 family transposase, degenerate [Neisseria meningitidis MC58]
MRKIRLSRYKQNKLIELFVAGVTARTAAELVGVNKSTSAYYFHRLRLLIYQNSPHLEMFDGEVEADESYFAERQNHINGI
GNFWNRAKRHLRKFDGIPKAHFELYLKGYERRFNNSEIKVQISILKQLVKSSLS
>MuDRF-2_PGr#DNA/MuLE-F 267-4737 via genscan, 6 introns (884:984, 1220:1291, 1477:1530, 2042:2109, 2370:2434, 4273:4393) [Puccinia graminis]
MSDSTSFHEELSQQSNSPEDPALEPPIKGQKIFFAPSGNEKTFIDHDCKLDGDGYPLYPNRKTIFVKTPDMIVHNWGFVG
FPKTSNVEWRADRTWKMIRMFCLGAFICNQPGCQWVGSPPTAKDAIAEYLQTDPKCPGAAGKCPGKVGHLACKNTITRID
ENTITKWGILRHHGTHNHPWPAPKKPDPLAKLKLKKEIMKNPTAGAFKLKLGKPTAPLNPFESVTQIHEAFVNMDRLRYH
RRLVLTELGVNPEKGGAGLGDKFLHDMFQWNHMGLLIISSSFKPGIEHFTFQTKWMGERLVTRDHNNEVYSGGLLSDVTY
RLFETGYLLSTSMFCEETARWIPVQLSWIRGLSAEYYQAHFATLFEQFDRPSFTTADRETLVRQVVDFSLAQREGFIAAY
MKVFGVTDRQQALSKLKGCHEHFRAQVTRVKRNRAVVPPEQEAQFQKLCLDLLQLPEPGKHTHEQKIDELRRLFPKTKRW
LDWWTMVDVEAMLFPSKRAMITNSENSTDNLPDTTNAQESMHRLYYMISDGKKCLMIGMAELFAFVKALEDDWHAVMRGV
SIEYGSKNKTQHDLAISIGWQKPPKRNPANRKKADQNDGRAPDTTATLLPKNVGGRPRNSPNLNKDPFSTYISYSASQDS
AKKNRCWMAAALESLYALFNPLWLRGTNGLKADIFTTLIKHFNSRTTWELTQSGHIRTFLSIGQNSLQTAANKLSPGSFN
PGVFCSCDLFIDLLIDPTFRKQSKSMYPPRELFTVTEVRTATCQDRPSFDQPHPRGIRDITLLRIQKETFNAANIEPSSI
QAIISRWTTDGIVTVSGLCCQACPSTQKTDKRHHLIEKSVLTIENEPPQHLYLLVQVSTIIDQMAQQTFMAGLDFPFKLD
FHGVSYTLFSRGFWNGVHYWAKMLKNVGGISGVWMHDDRENGGIARLISSDHSTIAGQARHTSWVFYSRAWIPSEEAFVV
ESIARISRDNDGAQGLMPFVHLGMLLNISPIKLGPSDENLHTLASVDTQVPQLKRMDSDVAELASAPMIFDSSAAQTQTL
ASTTTQTQPLASTTSGGDQLGDRKKKASGEFKIRLKFMKTTDPQLMSGNAPKIEEQDKATKVEDQASQIGRKTNEKNVGP
AKKLNGPKTKTIKPKRAGTRAIQSLVKFSYTTCFCEFYIAHPCEIGTLVMEALENSTFKVLDALLRRFAFARHMIVKSSF
VKLRFLSLX
>17976675_Cin#DNA/MuLE-MuDR gi|17976675|emb|CAA91234.2| hypothetical protein [Chelonus inanitus bracovirus]
MVTVIADKPRSANIGNAFVCSYRYRQWHCPVTAQKNYNEDITVKGEHSHSPTSFQEYQRFEEFKEKLKKQARESIDLPRT
IVNKLEIYSDVAHLILQSSARMHVIRERNKFRPRVPERLNELGSLLVGYEPAQGIYQGQVIGPDSSSAIIFASNTMLERL
NNCSELYVDGTFKCVPKMIGAKQLLILHMRKMDVGIASVFVLCSNQTAELYTGIWNFLLERAPGLKDNLKVVMMDFERAL
IKSVKESMPNVTIRGCWFHFTRAISCHWQNLGLKNVSSPLVQDILSLAWVLPLLPKEDFPVAIEFYREKANQVKAKYKGS
VNKFIDYLENQWLRIAEVVSLWRSPKRTNNICESFHRWLIHDLGIHPNLYSFIKLTTIITKIEGKWEGLERDGNSFGNKR
HKEALIDSYINCQQIALFNRINVGEFLMKMKTQSMKNFMQFKLYSPHIKNLNPEDICGPEELVNLLDYSKAIECMDSTPA
KSPEVIQEREPIVMQEQEITPEPEATKESGSMQDTMVVPKEEKFVAVQEVWIVMEEENELETNI
>77706_Pce#DNA/MuLE-MuDR gi|77706|pir||JS0237 hypothetical 48K protein - [Pseudomonas cepacia]
MKPGKKKAPKASAPLNIVAKQNEDRLRACFAENSQLLLPILDLIQNTRASIDELMYDAGRGLVEQLLVISATEVAGEKHP
GRKGGEVRWHGSQRGQIVMDERKLNVERPRLRRRGGGEVPIPAYEQLNQNPRLAERVHDIMVTGVSTRKYAKVLPEMAGT
VGISKSSVSREFIQASQRALTELMGRRFDDHDFLAIYLDGIIVGTRHVIAAIGVDSAGKKHLMGLVSGSSENAQVVKDLL
RGLIDRGLSTELEYLFVIDGSKALRSAIDELFGERAHVQRCRTHKLRNVLDRLPKECISQTAAIMKAAYKLPAKDGMAKL
ETHAAWLKAEHPDASAALLEGLEETFTVNELGLTPALMRGLSTTNLIENPNGAVRRVAGRVKRYRDADMAVRWAAAGFLE
AEKHFRKILGVSELWVLAAALKRSPSKSNIDHDRKVA
>32455929_Msp#DNA/MuLE-MuDR gi|32455929|ref|NP_862387.1| putative transposase [Micrococcus sp. 28]
MTAPHIVDPERLLREALGEASPDLLRHLLQTVINALLSADADAVCGAEYGKPSEHRTAQRNGYRHRPLDTRAGTIDVAIP
KLRAGTYFPEWLLERRKRAESALITVVADCYLAGVSTRRMDKLVRQLGIDSLSKSQVSRMAQELDEHIEAFRHRPLGEAG
PFVFLAADALTMKVREGGRVINAVAMVATGVNADGRREVLGLRVATTETGAAWNEFFADLVARGLAGVALVTSDSHRGLV
EAVAANLPGAVWQRCRTHYAANLMAVTPKSMWPAVKAMLHSVYDQPDGPAVQAQFERLLDYVQDRLPAVAGHLDAAREDI
LAFTSFPRDVWSQIWSNNPAERLNREIRRRTDSVGIFPNRDAVVRLVGAVLAEQTDEWAEGRRYLGLELLARCREPLTTE
QETVMSTEVMPTLQT
>MuDR1_TD#DNA/MuLE-MuDR 1036-3952 Via genwise with MuDR-7_VV_tp 1 frameshift, 3 stopcodons, and 1 intron (3097:3204) [Triticum turgidum subsp. durum]
LSEYYCTAYIAGDFDGLFTVEIHHKGFFCGTGSNSTYMDYAVDWFDNCDSDTWSILWIEDFLKQLGYDKASGHQHDVLWC
QPGRTLSEGMKEMKCDADSLAMVAAMTQHKNLLLIIDHGETLNSLLRDDVLGEGVPELPKIVTPRKENKGKENVSSPTVV
TEPSMGRKTRARRLFSKGSSSGCADEEFEEEDAAAGSDSETDEEFFDSDFDVEDGDDDLFEDHVDKEVDDHREKVTTCDY
ETELAEDALDDPHIMLSKEEREKLKYHFKGFNPETDLNAPVFRLGMVFGSVQELRHAITSYSIRKRVSIKKTRNTSKTVE
VICTDGCPWYLKAVKDSRKDSFIVKKYCDEHTCPKTWKLKCLTAPFLTKKFRDEFRDNEKMPLKKFEEKVQQEYNLIPSR
TKLGRARRESVKQIRGDDDDQYNHLWDYGEELRNTNPGSKFYLCTKEIFDEKLKQTKEHFSTLYWSLDACKRAWLLGGRP
IIFIDGCHIKTRYKGNLLTAVGIDPNDCIYPIAFGVVXVESTSSWEXFMASLKDDLNIFNTSPYTIMSDKQKVCDILLIH
LIHIVIPTLKCXTIYLCEGHYLCDLQGHIAAVSKVWPDAEHRFCVRHMYQNFHKLHKGEQLKNNLWAISRATNNPTYVKA
MDKMLADSVGAYKWVEKWPPRSWIKAFFNPFPKCDILLNNMSEVFNSWILPERELPILSMVENINNKITTRIYNKQKEVA
VDRKWSGRLCPKIKKKLDKFTDWAAHCMVFGAGQKVFKVVSMNHSYIVDLNMETCDCGRWDLSGIPRHHAIACAREERLI
LQVXRLDPASLVHECYSVQTYKKAYGYNIKPVRDREHWRKMNGVDVYPPMYTKVMGRPRRNRKKDPEEKIMKDGGKKLTK
HGVSMHCSVCGRANHNKKGHNMWEENNRDAPQPVRTNADDDGEEEYDDPSVISVR
>MDR2_tp#DNA/MuLE-MuDR 928-4090 via tfasty with MDR1_tp, 2 frameshifts [Oryza sativa]
MDRLVRLHYGGCVVDESTHGSQFEGMTVRQLVFFAKPTFEELMSRIKHELDCNDESVGMQGRYDVGGGVMSHKFMLDLNG
EIEWQTYIDIVLGSHFKSLEVFAWKKDGRIGKKELIDLNESQLIESPISCHELSERCSRKEELIEEDVEGARExDMADVE
VREENDPVREEVHAEENVPLREEVHAEDNVPLREEANVEENVPVREEGDVEDGREVGDDVELPEEEANAKNVSMGLRELA
RLKFYTREECEEAMIRSGLNPAWLEYDTEDELDESASDSDDDRPVRKMSEHERTVFAKLVGRNPEITQFEDLTRSGLAIA
DGDTQYDGAFEPMCDEPRKGLEFRSMDDLKIWLQSYSIRVHRPYHVKESNASVKYTVACLDRHCKWQINARKSGGDRWRV
TRVGEDHTCCSAEVTGKHLQLTSRFIGNRLQAFVRAEPTLSPAAIVEAVEQIWHYRPTYGKAWRAKQVAMKVIWGDWDEA
YVRLPTLMRAIKAKNPTMHFRIEAHPEKSRMVDGVQRRVFGRAYWIFGQSIEAFKHLRPVLAIDGTFLTGKYQGTLLTAI
GVDAGLHLVPLAFALVEKENTSNWEWFINMLRNKLIGPNREVCIISDRHPGILNSIIHIMPHHLTIHHRWCMRHFCANFY
TAGATTDQMKDLERICQINEKALFLDEIKRLMGVVGERPKKWLEDHMPLKVKWARAFDTNGRRHSIMTSNMAESFNNVLR
GIRKLPVTAIVAYTFSKCNSWFVDRHKEATVDILCGKKWPTKVKDILEEQQRRTLGQRAACFDFPSMKYEVSEQGGVTAA
GVQWGGRHYVVVARDNTCSCQFPQLHHLPCSHMITVCKLRGLDVEVAPRMCYEASNKAVQDSYSPRFEPYLDPSQWPSYD
GEFFVPDLSLKNNTRGRRRTRRFKNDMDKAYKGSANRRSQKPNNTNSEPVMQNRCSLCHELGHKKTRCPKRDKSKDRPKK
RRTTGGGGEGSTQVGLDDIHLLSSYCCFNVYFLLSYLSVLIVIFPFNIFSITNDSIFICRMEHFPGLEDFYEEKHRAPQI
ASGEV
>MuDR1x_MH#DNA/MuLE-MuDR 227-1625 via genewise with MuDR1x_SM#DNA/MuLE-MuDR, 4 introns (518:561, 856-8981134:1170, 1289:1329) and 1 frameshift. [Meloidogyne hapla]
NNKLVYEGYIYVKCKNGKDGKLYWRCENWRSGKCGGTSMTDKNEVVTVGNQHNHGPSPTRIELARIKDRINQAAISSALT
PRAIVNSQLAGISDQAKTALPKLRNLEKTVGRKRYADGQQVPVPHLLSEINIPEQLRRTKTDLNEDFIMADTGPEDPNRI
IVLASRTDVARLASCDVWLCDGTFKSCPQLYYQLWVIHGRFRQAAVLPFIYALLPSKTRECYRRALDLVLXIDEVNLGAR
PNVVVIDFEKAEELALRTALPEATIHGCFFHFKQALWRKIQELGWAAKYQDEVEDGFRLHLKMFAALTFVNTVDTRNWFR
QLAQIFLDVYGDGDEDGPYVAFVDYMEKTWVGREFVTPRFSLEMWNNRGITLDQMPRTTNSAESWHNSFSSIFHRHSPNP
YKLVRALLDEQ
>MuDR-1_PSt#DNA/MuLE-MuDR 75-2173 via tfasty with MuDR-1_PGr, 1 frameshift and 3 stopcodons. [Puccinia striiformis]
EFPAPPPGNYREIEDCEEAIKQFAVANCFAIVRKRAKAGKCDRHLFLFYSLSFLFLCSSSLVIxLMLTVLHLYFGTAKSN
KREGDPQEPRVTRLCNCPFYASLYYQSQEKHWKFTVKEPRHNHAPSGSPAAHTANRKLSARLFKEMNQLSDAGLKPARIL
DALKKLHPDKMILATITTIYSARKKAFADSLxGLNPIIKLHKALPQSDYTTRTKVDESGKIKGLFFCHNLSIQLLTHYHH
VLLLDCTYMTNKHKMPLLHIAGVTGANTSFSAAFCFLAEETQDFYDWALKTFLTIFTAHNIPLPHIFLTDREQALINSIE
TTFPESNNMLCTWHIMKNLGAKANDLIKDKKKELAMIRHWGNVIKISTTGNFCASFERFVAQYGEPFQKYMTSTWLPVAE
KYSNAWTKNLPHFDHRVTSRIESSHAYIKSHLRGPNYCFPAVIKSITTAVVAQAHKISVYHHQQRINALRSLGAIFSNCH
GRITHFALRKAQNNLVSSADLDKSSRCNGNHQLRTGIPCKHRIAELAKRGEKVEPDEFHAQWHIKVRGCFLILSLFSFLP
VSSIHQYxLTLLFFCQQDFRPLDQPKSADDVQKVEQIKEKLPEMNPTQRAPQIDTINRIIEGSSAIVDVKLHKGPKKKNG
RGRTKGSRNKPKNKKNNADETTDEEEEAEEDTPKRHKPTKKPTQTRTKREPSRFEHVETK
>MuDR4_OS_tp#DNA/MuLE-MuDR 852-3598 via tfasty with MuDR2_OS, 1 frameshift. [Oryza sativa]
MSGDMPIRLYYGDAPIQICDSGVDLTVYAFHDTSLNAPEHMGLNDVLGWLYNMFGVDPVHDKFIINAVWLVRGQHGWQWR
VVEVASTGSWRKFVSKVREKGYSLAIVVQKTKCVDRSGESSHAVVEETPLEGGQAENVWRTEQGRGEEVVEGNTQGEVIV
RGTNREANDSDDEEPDSPMRVDAAEENEAVVDQMEVENEEYIALVVEGEDTTLWDNETYIPDNWTTISMSRMKVNDGLDA
HWCYDSKQVKVGQMFHDKGHLQDAVKRWAFVQKREFRVKVSNRTTYDVKCIQGGCPWRVHGYKPQHDTLWVASRVEQHTC
LLENTRLVHRNLTAAFVAQMVYSKVVRKTSLSPFTIMHDVEKEYGYEISYDKAWRAKQKALEMRFGTYEDSYHNLPPLLE
VMQARNPGTHMAILDEVNEYGENVLRRAFWSFGCMIEAFKNCIPLLCVDGTFMTGKYRGTILTAIGVDADSHVVPVAFAF
VESENTSSWLWFLRHIKMCVVENRPNVCVLHDRHAGLLSAIQKLQEDVTQSVPWPDLHSRWCMRHFGANFYRQFRSKRLM
DLFKKLCKQNQQRKFDAIWEQLDRLTTTHMEEVRKKPIVARQEEPEGLEPIPNEAPSITRRRKRGRATKCFTEWVEFEPR
EKWSLLYDTDGSRYGVMTTNLAEVYNWVMKNTRPLPLVAILEGITRGTQKYLCKRYSMASLNLSKPSVKYSPAITQYMDE
KSKKGGIHRVWPAGNRELLFEIRLRDKSGVGIGTTDITLECTLWPEYHACKCNCNKPYLLHRPCSHVLAASAKGGVDGNI
FVSPYFRKESWEATWRGELRGWRAVCDFTRPPPGQANWVPDSNLLVDTKGRRQSRRIKNLMDEAEVKDRSRRKKACILCG
ENHSRKDCSMYNVGQDATGADVRRVPKGKSKKKNNP
>ISSod5_Son#DNA/MuLE-MuDR ISSod5 gi|24375766|ref|NP_719809.1| ISSod5, transposase [Shewanella oneidensis MR-1]
MTTPTFDINAAIQALREGKDLTGKDGILTPLIKQLTEAALAAELDGHLASTEGANRKNGKTTKTVKSPLGNFELNTPRDR
AGTFEPQLVKKHQTQLTDEMERKIIGLFSLGSSYQDIRAHIEDMYGMSVSNGTVNAITDKLLPELQAWRERELEPLYPVI
WLDAIHYKIKENGRFISKAVYTILALNVEGKKELLGLYLSDNEGAHHWLSVLTDLYNRGVKDILIACVDGLKGFPEAIAT
IYPQTEVQLCVIHQIRNSMKYVASKHQKAFMADLKCVYKAATLNAAEMALDELETKWGDKYPVVIKSWRNKWALLSVYFK
YPDYVRTAIYTTNAVEAVHRQFRKLTKTKGGFANENSLLKLLYAGILKASERWTHPIQNWNLTLSQLSIHFEGRLENHID
L
>50553866_Yli#DNA/MuLE-MuDR gi|50553866|ref|XP_504344.1| Mutyl [Yarrowia lipolytica]
MYSDSDMPSRILIFHARPCTWTPMRCTSTVPYPTPYSIIVVDLEANSEQYTKTPSTIPMINANMPGQLGPPVTHQPFQHT
GNPPVGLVNRPPIPDNPMQRDVLIRPPTEHQFMYQPTAVPQHFYHFRLDYKVFVYLRTADGKYEKLNTPDELKHVQIGID
NIDDRNPYLNFSVENPFMFPPVPEPSACSAHFPEHAPSMPQQHPQQHPQQHPQQQSAPETSLSEPIDVDSMDVEDPVEST
VKFTPYTPPGSVIETPPQLAPPPVVKSQPRKFDDSNAEQKRMDIMKKLAEYGREFDYYFEKVQAEFDYKMLHTDLTVPRF
KEKAEAIAYAQTTARLHGFVLHIGGGKARNILQCHKSKYDDESGEIGKPTNASRRVACYCPFQIRVNKLGPNDFGLVYCH
EQKKDENGDALCAKHNHKPSASVSTNGAYRQLDLANIRKGCRDIDLFDILVKTQTFPRKILDALRLISPAASRLTRLDIT
NSMQKFDKEVCGDMDPVEALLIMLELSPQIHVEHRIVGCPAEITEELLEEDRRQERWEPDMYDASDAEELEPGVDHFETA
DEDGGLLVEAELMSETEESDYVDGGIENEATDESEDESEDEEIVEPLLRKRPRQSSRRVPPEPMPSTPPPEANLPEQPDV
IKDIFFVVLKSVKMLRAFSGVIAIDVTHNTNKFNYKLFNVIGIASCGRSFNIAHALISREDADTFKWCLDRLKVFLQKYL
IPDPGVILSDCAPAIKKGHKYSELNGSNLKLCLWHAAKAVERKGSALFGSKSLETAQLVSKFKKMCHAHTADEFERLYTD
FKLTYKKEGMDRADKHDRSIDGRRNSAYYYIRRYWFGNDQHPKHRHNIVAAYSRESNFFETTTSRIESIHALQKSNMRTR
IISLFQCATVVLRTSVNVLCDLEHAHAREMERYRKDIDKKFCKSIRTFISTKALLKCMEQISVASHDDYVPTECTGQYSL
DTGLPCYHMIGHLILSDDGRERMRPRAELGDKNLGPAVIHQRRARLMLGDFDPRWRYLHTTAQMNESDWDDACNYGKFRE
RWEALRKSEKEWKKRDEELAKEVHAYVPRNGDCVAHMVEDEVVGPRRRRVGRVKASNEKKAGPKCQICVNQRHATSAHCF
RDKGGDKAYREWKNGLIPRRQFTGHVVGGPKRIRLCRHSRTMMTATTADNQDREYAAG
>48859304_Cth#DNA/MuLE-MuDR gi|48859304|ref|ZP_00313240.1| COG3328: Transposase and inactivated derivatives [Clostridium thermocellum ATCC 27405]
MALLEQLSKYVVEKDKDFLKEALTLLINALMDAEVTSIIGAEKYERNNNRNNYRNGYRLREWDTRVGTLQLSIPKLRHGS
YFPSLLEPRKMSEKALLNVVQEAYVHGVSTRKVDELVEALGMKGIDKSEVSRISKQLDEFVEEFKNRRLEGEYPYLWLDA
TFPKVREGGRVCSMALVIAVGVNQQGEREILGFDVGMSEDGAFWEEFLRRLVARGLKGVRLVISDAHEGLKAAIKKILTG
SAWQRCRVHFMRNVLSQVPKHYQGMVSSIIRTIFAQNDQESAREQLRHVVDELKNRFPKAMKILEEAEEEILAYMAFPRE
HWAQIHSTNPLERLNREIRRRTDVVCIFPNREAVIRLVGAMLMEQNDEWKVGRRYFSLESMSKITSINEFTLTPVALLHK
>53731543_Mbu#DNA/MuLE-MuDR gi|53731543|ref|ZP_00148732.2| COG3328: Transposase and inactivated derivatives [Methanococcoides burtonii DSM 6242]
MEQEAIEQSGAGKHERSITRTAHRNGYRDRSLTTRHGELTLKKPQLRDFPFTTQVFERYSRTEKAIENAIVESYVQGVST
RKVEKIISQLGVESISRSRVSRIAQDLDKTVHGFMNKPIEHEIKYLYVDATYLKVRDRVRYVNKAVFIVAGVKNDGYREI
LGVKIADSEEAMFWEEMFTDLKERGLRGVELVISDGHKGIQRAVERQFLGASWQMCIVHLERLILKKLPRKHHKEAMESF
KEVQDDQTKLLGLMVEWDRPGFEKAAETIERFQHGLTNYQAFPKEHWKRIKTTNMIERLNKEVKRRSKVVGAFPNDESLM
RLVIAVLIDQNENWITGNRYLTMED
>ISRm5_Sme#DNA/MuLE-MuDR ISRm5 gi|15966519|ref|NP_386872.1| TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT ISRM5 [Sinorhizobium meliloti 1021]
MTKTEGKTASAAVKDILLSNPDGLREVIRTVMQEVLEAEMDEALGAAKGERTPERLGYRSGHYGRTLITRVGKLELRVPQ
DRSGHFSTELFERYQRSERALVATLAEMYVQGVSTRKVKAITEELCGHAFSASSISAINKRLDESLKAFAERSLEEPFAY
LILDARYEKVREAGVVMSQAVLIAVGIDWDGRRQILSVEMAGRESRSAWKDFLVRLKGRGLKGVELVVSDDHAGLVAAIG
EVIPEAAWQRCYVHFLRNALDHLPRKHGDDCLQELRWLYDRRDLDEAKADLAAWLGKWSVRYPRLTSWVEETIEQTLTFF
RLPRQHHKHLKSTNMLERLNEEIRRRTYVVRIFPNTESCLRLVRALAVETHENWMEANRYINMDDLREHKKLALRQAA
>ATMU3_p2#DNA/MuLE-MuDR 4530-4330, 4279-4061 [Arabidopsis]
MSCNSRNSSGESGGCNSGMISNAEAGGFKSRGFPVKCKCGLEVVMFTSSTAKNPGRPFFRCKSCEDLEMELQDHLFKWVE
ECMYEEVVDALPKISSIDNEIINAKAEVAVEIANLKELMIELKEDGMWSKREIQRWKKM
>Polinton-1_AMi_2p#DNA/Maverick 5401..7782[Crocodylidae]
MDKKFKDYTFIAHNAKGYDGYFIVSQLLKEKMGVKLITQGGKLMCIEVTRLGIRFIDSLNFLPMKLSRLPQAMGFEGCKG
YFPHFFNTAENQNYVGPLPKVEYYGVENMMSGEKGQFLEWYQNNRDKTFDMQKELAYYCQQDVKILKEACCLYRDEIMKM
TRRVDRVKVDGELQNVERCIDPFQYITLASVCMAMYRFMFLEPQTIALLPPDNYHRQKKRFSTPSIQWLMYISEKENIQI
RHALQGGEFQVGPYFLDGYANIDGEPTAFEFNGCFFHGCVTCYNEKDQNPLTGTTFGFLNYQALHKTDYLKREGFTVRTI
WEHEWRALLETDGELADFLSRTPLPSPLVPRDALFGGRTNAICLYYQTKPGEQIHYYDFTSLYPFINKTKEYPTGHPEII
HDNFQPLSSYFGIARVKLYPPRNLFFPVLPARVNGKLMFTLCRLCAETRQQKCDHTDEERALLGTWCTPELNKAIAKGYR
VAQIYEVWHFAERSSTLFSRYIKMHLRQKQEASGYPAWCTDQEKQERYVANFLQKEGVTLRPEHIKPNPAKRQIAKLFLN
SLWGKFGQRTNLPNTSIVRDPEELFGYLFSPAYEISSCDFIDDEAACVSWKHAKERYTLSGNTNIFIACFTTAYARLELY
ELLDSLQDRCLYHDTDSVIFVSREGDWNPPLGDYLGELTSEIPPDEHITEFVSAGPKTYGYKLSGGKVCLKVKGITLNVA
NSEKVNFETLRDLVLDYGANPAGDTPKTIVIQQRSIVRNKSKWTIETKTLRKTQKVVYDKRVLTENFNSLPYGF
>Hopper_Bd_tp#DNA/hAT-Ac  859-2814 Same as gi|19698551|gb|AAL93203.1|AF486809_1 transposase [Bactrocera dorsalis]
MRPGLKRSAVWEFFTKNGNNVNCNICKKNLKFAGNTSNMNDHLRRRHPSSHSVGETSSAIVERAPAVSDLDMPSCSSTQR
DVNLTVETIESEISSASLVPPVNVETTSSSTIPSRNISGGGPLKRRAMQTKLFVTSTRSELSETEKRSIDESLIKMVTRD
MQPLSIVENEGFREYTKKLQPLYSIPNRKLLSNTMLPSKYNETRKKLHAILQNISHLSITTDMWTTDSQKSFLTVTSHFI
WESKMNSAVLATKVVFGSHTAQNIATELKSIFDEWSIFNKIVTIVSDNGANIKKAIRDILQKHHHPCVAHTLNLCVVDAI
KTVPQILELITKCRAIVTYFHHSSQAAEKLKNMQKQMGVAELKMKQDVATRWNSGLIMMERICLIKEPLSAVLTSLPSAP
NFLNASEWERLRDSITVLKPIEHMTIELSAQNYPTMSLVVPIVRGLQYAIRSQQMKTTEGECLKSSLLEVISRRLGQPES
DKMCAKSTFLDPRFKKIAFGNESNSSNAQKWLGEEVSAFIERNQRTATAPVIELPADKSKLSLWTLLDQKVAEAKTICHN
APSVNAHISLEQYLRQDFVERHQNPLNYWDSKKATFPELYELSNKYLCIPATSVPSERVFSKAGQIINDRRNRLKGEKLD
QIMFLNSNFNI
>Hatory_tp#DNA/hAT-Ac 769-3004 Is: gi|37530608|ref|NP_919606.1| putative Tam3-like transposon protein [Oryza sativa]
MGDTDETVACEINHTQSQDTKTGVSTTGVVDASKDKEEQQQSKDEEKADEESRKRKPMALRSDVWESFSKVKLANGDERA
KCKWCTKLFHCGSRTNGTSSLKAHLKICKKNPNKPVVDNQGTLQLTPCDGNSTLGTVTTWKFDPDKLRRCFAEMIIEDEQ
PFVLSERSGLRKFMTLACPRFVLPSRRTITRACVKVYEDEKEKLKKFFKDNCVRVCLTTDTWTAKNSQNFMCVTAHFIDN
EWNLQKKIIGFFLVKGHRGEDIGKSLENCLAEWGIDKVFTITVDNASANNNAIKYMRRVLNESKGCVAEGEYIHMRCAAH
IINLIVGDGLKEIGTSIQRVRAAVKFIRCGTSRLVKFKKCAELAKVQSKAFLNLDICTRWNSTYLMLNAAEKYQKAFERY
SDEDPYYKLELEGENGPGVPTRADWEKARKMADFLEHFYDLTLRVSVQSRTTSHTYFHEIADVLLLLREWSHSEDKLSKE
MGTRMLMKYYKYWGEKYGERQGDREKRGEKDKGDQLLNFTVFFCVAIDPRYKLSNCIRMGIKVMFGDTVGEKVWETVNTY
FRALFEEYKEMYTPKDKAPQPTESESTAETSKRVSCRWMSVITQQLNSEGGSGTIKSEVDKYLSEDNEPDTPKFDILKWW
KANSTRFPILSHLACDLLAIPITSVASESAFSAGGRTLDDFRTSLTPRMVERLVCANDWLRGGNYVSVEEDSEQMALLEE
ELGDLSISKEDTPAATQ
>TWIFBIG_tp#DNA/hAT-Ac 668-2846 One frameshift in RepBase entry Estwised with several hAT transposases [Oryza sativa]
MDPNFPYQSPSFTLGDFDPNYMSGFDGTSGSAPTPPSVEEVPVHTAVVEEVPVQAETASEGFSGTASGSVSTHTGSKRSR
TSGVWQSFDEIKETCPDGREVSKARCRICRQILSARSSGGTGHLKRHAESCAKKQGIQLRQQQLMVNPDGTVRSWEYDPM
VARESLVRLIARQDLPLNFGESPAFEHYIQQSHNPRFKAVSRQTSTRDLENVYHKEATALKELFSTCTFSVSVTSDIWSS
RAREDYLSVVVHFVDDDWQLQKRVLGLRLIDVSHTGENIAERIREVINEFNLADKIFAVTLDNASANSRAIEILQPLFCV
YAQSFLLHQRCACHIINLIVKTGMKRVGDHIDAVRQAIAWLTASNPRIAAWKXFCNAAGVKARKFATDAEHRWNATYLML
KVVLPYSSLLSDFVQSRGGPRNSDGSSVLNEHVWAIVQKFYQFLETFYDCTLTLSQVYYPTANIILHNLLEIATLFKEYE
NDDVLTEPVFHMKQKYLKYWKNIPMLYALAFVLDPRCKLRGLSAILSLVGDTIGVDYSSFYTEVRRKLYEVFGRYEVKFQ
EVRQQRPPPIPTIGKKKIQWGRIWGGSSSSSIQGGGSSSATSGDASSHVVAEELSGYLDSDAIHHEAQDFNVLGWWNDHK
ITYPVLSKLARDVSTVPVSTVSSESAFSLCGRIIEDRRTTLRSDHVEMLLSVKDWELARQHAQYTADNQELAAQFEQLYL
DPDQPQ
>hAT-13_Crp_tp#DNA/hAT-Blackjack 967-2907 80% similar to Blackjack_tp itself. [Crocodilidae]
MSSNKKEGTSVRKRKCTFNDALSSEFPLLKRVDTERVTCVHCSSTFXVAHGGRSDITDHLQTKKHKSAIEAASASAKLTS
FFKQSTAGDTELKCAAAEGTFAYHYVQHDLSFRSSDCSSKLISKIFDPKFSCARTKSEAIALNVLAPLAKDELSTELAGT
SFITVSADASNRKAVKLIPILIRFFNPLSGVKVKLLDVHSVKGETSEIIANVIESSIQKHGIVHKVIGFCGDNTNTNFGG
VQHRGKTNVITKLKERWNRDLLGIGCGAHIVHNCLQTSCDTLPLELEALAVKVYKYFHIYTVRVTELQDFCDQADVDYKI
LLQHGNTRFLSLLPVIQRLLEMYEPLKAYFINQPKCPTLILNFFQNECGKFWLLFVHSQLENFTQAIQRMERQSTSAFEA
SRELQSLKTKLVNRKTLKFVPVNAREEMSHLGETTKDYLLRCILQFYDCAIDYLTLWEGSFDGTSAFDWMNLHLCPEWSN
VETSYDFVRKRFDAESLSRLINADGLFDEFCAVKIYVEGKLKEWREKDIPCENRWVEIFNHFSRSLIPTDNIRRLVEYAL
CLPGTSAPVERVFSQTKKLWSPEKSRLSVSTIAALLSIKVNFDENCLEFYKKLKNDNSLLKKMHSSEKYQWFGSRDEEGQ
EMEENSD
>ZhAT10_ZM#DNA/hAT-Ac 825-3068 [Zea mays]
MDLDPAAEEEEAERQLEDHNEAMDARQALLGVGVTHLDPIDLEDFVASRTGTATDSTSPPASTTASAGGGSRKRSKVWND
FDELTNLVNGKXVRYAARCKHCKQTLSARSTSGTGHLLRHNCNAKKAHERSGQVQSVLKYNPDGSLQRWEYSPSVARTEL
CRLIARDDLPLWHGSTDAFQXYITRAHNPRFVHVSRQTTARDMIKFYNERMVNLIGTFKTDVSSVCLTSDIWSGKAKEDY
LSVVAHFVNSKWELEKRLLGLRLIDGKHSGVNIANLVATVIDEYGLTDKVFAITLDNASSNNTAMKFLRPFLSGYLGVPA
PVVTDDDDDSFTPTDDELSTMFLHQRCSCHVINLIVKAGLEPMKTYLDDFRTAITFLNASNQRIAAYKSYCMSMAIRPRK
FGVDMDVRWNSTYLMLKHLVPHKSTFSVFIKTQYPLNSDGTPLLTDNHWAIAEKVLSFLELFYESTVALSGVYYPTATLM
LHHILRIARHLNAFENDRLLRGAVVPMKDKFLKYWRDIPILYAVAFILDPRAKMRGFNKLLVRLSSLTGTDYSSLPIDVS
TKLTKIFQLYETKFGDTRLRANQHPSSLGSGKKKMAWDDIYGDDDYDGEFSAPLGRRPGSTSISTAASTSELASYLDSDT
ITEFDEDFNVLSWWHQHKLTYPILSLLAKDVLTVPASTISSESTFSLAGRVIEERRRRLAPDMVEVLSCIKDWELADAHL
QHTVEEDTQELEAEHENLYLDDPEEHNQ
>HAT-15_Mad_tp#DNA/hAT-Ac 1773-4310 [Malus x domestica]
MQASDRVDDAIDLEYESGGSKCETESEGDQEEVSVSQLLQGKRSKVWEHFRPYQVKTLVSLKDREGNVVKDENDELVMVP
HVRLRAKCVYCPEHTNDGDYAADSSTNGTSGMRKHLNRQCKYYQANLRKNQKLLYEEKKWGKTLVNREFNQSDCLEACVE
MIVLDEVPFSTVEKIGFNRFCSVACPLFRVPSRRTLVRTFLRMYAQSKDSLKKELHAHRISLTTDTWTSTQNINYMVLTA
HFIDDEWNMHKRIINFCLIANHSGATIAKLIETCLLEWGIDKVLTITVDNASANKVALDQLRSTMNRWENSQAVLHGEYL
HVRCIAHITNLIVGQGMKRLTKCLLAIRNCVRFVRSSPQRLEYFKQAVFMEKLTCKASVCLDCPTRWNSTFHMLEVAIKF
KKAFARMGEESDTPFSVYFKEFEEEKDEDGIVAIKGQRRVGPPTGEDWEKAEVFVRFLRVFYEVTLRVSHSLIPTAHTAL
HDVIKIETAIKNLVPPPNVQTGSPMEVLLKQMATDMRAKYDKYFGSYLQLNNLLVVALILDPRFKLRHVTHLLKKQLLEV
DVHLKTKEIRDVLDALYKEYAPRVDGGKHMKVPTPPRESSSTSHVESFEDDCVDDWIDFVEESEEQVVGDEVDSYLLDPL
EKVDKETKGAFKILSWWKTNGCKYPILAAIAKDIFAIQASTVASESAFSTGGRVISDFRSSLTPKSVEALICMHNWMRGD
GIITLEDDAPSLEHLEFYESIEAGNFLFLFLVLVCYNFLDFILCVYKLCIFLYYVELLTSSISSLSINNPEQQASSSQPL
TRPSQASASQASNRPPRASKGAQSKVPSNPHKPLTTKGVKRKAPKG
>HAT-9_Mad#DNA/hAT-Ac 2039-4161 via genewise with ATHAT1_tp#DNA/hAT-Ac, 1 intron (3653:3747) [Malus x domestica]
MDIDEENTEAMEMSTFNLSDTQGTTSAPSPSKRKAKGMRVGKIRQKRSRVWTLFEELPVGPDNKQHAKCKNCGIVYVCDS
NCGTKNLLNHMDTCSKKHHIDMKKSQVGLRSPQFNHISFCELLIEAIVKHDLPFRFVEYEGIRTLFKYISPDIKLPCRNT
VKKHVLRMFEDEKIRLRDWLNTVEGRICLTSDLWSSATTDGYLTLTAHFVDKEWKMHKRILNFCRMPPPHTGVALSEKIN
ALLVEWGIEKKLFSITLDNASANDCSVELLKKQLNFRGLLLMDGKFFHVRCCAHILNLIVQDGLKEIDGSVTKVRECIKY
IKCSEGRKNKFFACVAQVGLAGSKRGLRQDVPTRWNSTYTMLDSAIFYRRAFLNLALVDSNFSSCPSLEEWDKIEKISNF
LGYFYEVTCLFSGTNYPTSNLFFPKVFKVHYCIQDAMEDCDDFMRRMGSYMNLKFEKYWSEYSLILAIAVILDPRYKLQF
VEWGYDKLYGKESRELKDVSGTLFALFGRYMDKFSHLLVSNPVNQTPTQIKVGDKLFEEFDNIYQDGSTSVEKTELHLYL
EGKRLDRKQELDILSWWKLEQFRYPVLSRMASDVLTIPISTVASESAFSISGRVLDQYRSSLLPETVQALLCTRDWLFGK
EGKFHISLYFFFFAYIIGYNCFSFFLFMFSFRERGC
>hAT-2_DK#DNA/hAT-Ac 20-2206 via tfasty with Hoyak2_tp, SW:1341, 3 frameshifts and 1 stopcodon. [Drosophila kikkawai]
MALSRYRLFTFSEPPSIVVCHYRWCWAFLTSLILRTRGLVDENFGKKLQFIKYYIISNQNGFLDKLKLNGGGGLSMDKYL
RNLKRKGNYNIFINNGKHVSNGYLYMYVYLDDNTTDKNSSDEENGGIKKARVGKSKVWNFFVRSNDGKTAKCISCEKVYR
TSGNTSNLFDHLKRVHPALKVGDLEVSSSSKIDSFVTTCYDTHSRRKAELDRVVMRYITTDMRPYSVVEDTGFREMLKAF
DPRYKLPSRKTLKNVIMEEQYAEKESKLMDILKKIDFCGITTDIWTSVANEAFITITCSFVTEDFDLKTAVLSTNKLRCE
TNHTAENIKETLQAVFDKWDISAKIVAIVTDNASSMIKACELLQKRNIPCFAHTVNLVVQDCLKLDCLVPLLAKCKSTVT
YFKSSTIAYKKLRDYQDGQTKYSLKQEVPTRWNSAYYMIDRILKTHEAIGKVFLNTSKAPQPFTVDELDILLDLTKLLAP
FDTATKQVSSNTVVTISICIPIACGLMHTLDSVKSELKSSEGLAACKFLMDNIITRLSKYEERSITRIATLIDPRFKKQG
FRSPFNSGQAEKLLENEMTHLKNLSHDSVLHAVEPPPPLQNNQSQSLFKFVKQNIEELPKTKRVDAIVELRQYFNLNHLD
ENVDPLQYWKVTIPICTNHKKTxLIKFPLFQHNDSNMKQLVVKFLCVPATSTESERMFSKAGLIMSKRRASLEAKNLDAL
LFLQRNAWVN
>HAT-9_XT_tp#DNA/hAT-Ac 1053-4274  [Xenopus (silurana) tropicalis]
MPGKGRPPRRGTRGRAAMISCGPRKLPSFPKALTLNSQNAEEVVDWLTQHTPSSTVSNFATTSSSSSAMGTPRTTSSTTA
APSSLESEELFTHEFVELSDAQPLLPEEDEGDEDVTPDIIIQAGNTTEMDIRCDEVPAAAVFCELSEEIDASEENDDEEI
DILWVPTRREQEEDSSDGETESQRGRRRIRLRRSRDSSQGTVGQQHESAPVVSQPTHPPTSTVTARKPTSKGSAVWHFFN
VCASDKSAVICNECSQKLSLGKPNTHLGTTAMRRHMNAKHKALWEQHLKGSSQTLSHPPSAPASYCSTSAVLDPSQPPST
PPSTLTTSSCSSAPSQVSVRAMFERKKPMPPSHPLARRLTAGLSALLARQLLPYQLVDSEAFHQFVAIGTPQWKVPSRNF
FSQKGIPHLYQHVQSQVTASLSFSVGAKVHMTTDTWSSKHGQGRYVTYTAHWVNLVMAGKQGMRGSTTVELVSPPRVACG
SATTSTPPLLSNSSSKSSSNSSSNLASSSASSSSAAVSSSTPVHPQLHIGYSTCQVRRCHAVLGMTCLESRNHTGSALLS
SLHSQADRWLTPHQLKIGKVVCDNGSNLLAALRLGNLTHVPCMAHVLNLIVQRFVSKYPGLQDILRQSRKVSGHFRRSYT
AMARLADIQRRHNLPVRRLICDSQTRWNSTLMMFERLLQQQRAVNEYLFELGGRTGSAELGIFFPRYWVLMRDACRLMRP
FDEVTNMVSRTEGTISDLIPFAFFLERAVRRVTDDAVDQRDQEHDFWAESPERSQAPAATQGEVSEVESEEEGGFVEAED
QQEQASRGACGHLLWSPGLVRGWGEETVVDEDVVLDNEEGEMDTSASNLVRMGSFMLSCLLKDPRIKRLKEKDLYWVATL
LDPRYKHKVAEMLPTYHKSERMLHFQTSLQNMLYNAFKGDVTPHSRGRGAGNPPTSTPARTMHFGHSVTSDMQSFFSPRQ
RQDPSGSTLRERLDRQVADYLALTADIDTLRSDEPLDYWVRRLDLWPELSQFAINLLSCPASSVLSERTFSAAGGIVTEK
RTRLGHKSVDYLTFIKMNEAWISEGYCTPEDLF
>hAT-14_Crp_tp#DNA/hAT-Ac 11-1789 via tfasty with HAT-1_SP, 2 frameshifts. [Crocodylidae]
MERSKRSHVWNHFTKIKEDAVRCKMCNTELRYRNSTGAMLNHLKLKHPSVSSERQDRETNNMSAFVSGSSRKCDTQRAEK
LTELLCTMITEDMLPVSVVEGAGFRALMSFVEPEYHVPGRQTVTSQLERWYENCVNSLRERLGKADKVAFTTDCWTALNA
ESYMTVTCHYIENWELRSAVLQTESMPERHTAENIAEKLNAAVERWGLEGRVLACVHDNASNVVLANMPRYVAWESVNCF
AHTLQLAINDGFSGSVDHVIAAASRLVAHFHHSTVAAKALERKQTQLQAKQHHLIQSCKTHWNSAYEMFERLSEQRWPIT
AVLSDRSVTKVSDAQTLELQDEQWQLIEDILPVLSTLKCATTAMSAEHSASISNIYPICNSLLNTHLKSETAGKSGKIAD
FKSAVRRSLEHRMKPNDPAIINRPALIASMLDPRHKHLQFLLPAIQIAAKSKLMQLASFLESEAAPSAVAEPAEPTEPAA
KKPGETEKKSAIAMLLGEDYAKKTDGNAVENELENYFREPCPSLECNPLEWWKVNAQRFPRLAKLAKSYLCIPGSSVPAE
RVFSTAGLIVNQLCSRLTPEHVNMLIFLNKNHQ
>hAT-13_SBi#DNA/hAT-Ac 814-2811  [Sorghum bicolor]
MSSHTSESSGTQGLSLASHSKVNRRSKVWQYFEPNLVAVDDNLKVVCKYCGLHLSTKSGTSSLRTHISEYCPAIDDASRK
EFISTMKKQPSENFVFDPQLSRERMIEYVVHAEIPFNKFEDPYFERWMKTVNPNYCCVKRQTIRNDSFKKYEKMKMDLLI
ELGSLNSRVCLTSDLWTSVQNLGYMVVTAHYINADFKLKKKIISFKEVKYPHTGIAIEEALVSCLTEWGIREKVFTLTVD
NASNNNRACEVFVEYQKRELMLEGAHFHVRCCAHILNILVQDGMNIIHGGIRKIRELLKHIVSSPSRIQAFNQIAIGVGL
PTKHGIALDIPNRWNSTYKMVREAIKYKVVLNSYAHQYAESSPNEQEWSQADAICEFLKAFEEATNLVSADRTPTAQMFL
PLVLSIRHCLNDPAWQTSVVLNDVAAAMKIKFEKYWGADVDESNPFSLRKKDYDFNLAIVIATLLDPRRKGEYVEFFYRK
VCRNVDQANTCLTTALEWMRKYFSVYERRVMQDCSYYMTHSPVASSSLVGSPVLGKRQIEEEFENFRSSRRRASAPKSEI
DTYFEEEYVADSNSFDILVWWKTHAEKYPVLSTMARDFLAIPLSTVSSESAFSLGGRILGETRSSLTPEMLEALVCGKDW
LFLEKDVGMDNQVQYWSFFVFICSI
>47221740_Tni#DNA/hAT-Charlie gi|47221740|emb|CAG08794.1| unnamed protein product [Tetraodon nigroviridis]
LAIFARSVSNDYVIKEELLDIVPLKDRTCGIDVKETMMAAFLKANLPIPKLTAIATDGAPAMIGSVNKLVGLCKPDQTFS
EYWNFHCIIMYREQLISKSLNLDNVMKPVMEIVHTHALNHRQFRNLITELDQGLPGDLPLHCTMRWLSKSKVLSLL
>hAT-18_Crp_tp#DNA/hAT-Charlie 360-2296 via tfasty with Charlie3_tp, 1 frameshift. [Crocodylidae]
MDHFLVKRKTSDLEEGSSQTNVQQVLEPEEHVLKETSLSSESTKSSQVHKARSYDPSYLAFGFTTNRGIPSLPLCVICSE
TLSNHCMKPSLLKRHLHTKHPDLKDKSIDFFSRRKCESLKKSSAAMKSYSALPKQALQASFEIAHMVAKTKKPHTIAENL
VIPAAIRIAEIMFGKTEVDKIKTIPHSNDTMTRRIDDMAEDIIKQISEKIIQKKQFALQIDESTDVSNYAQLMMFVRYID
DEDEQGIQEQIYGCKELDTKTTGEDIFKILNEHIVKNGLSWEWCVSVCTDRAAAMVGRRSGLVARLKAINPSIKWNHCII
HRQALAAKQLNEDLNSVLGTAVKTVNFLKVQALNSRLFQSLCRDMGSEHTTVLLHTEVRWLSHGRLLNRLFELRYEVTVS
LREMKSEFLQHFEDEVWICKLAYLCDIFDKINDLNLQLQGYNTNIFTLHDKVRAFRKKLRFWKNRALCGNFGSFPQLSEF
CEENEIPLNESVKENIKEHLVNLESNFEHYFPNVEEHEDPQKLWILNPFNDSAIEQAGIPESMKEKLFELSTDSTLQRMQ
SMGLGDIPAFWQKMKWEYPQLRNMAVTELLPFASTYLCETSFSHLTGLKSKIRNRLCPENDLIVAISSLKPRFGMLMSSK
QAQVSH
>HAT-12_SM#DNA/hAT-Charlie 597-2396 [Schmidtea mediterranea]
MSSRKRKIADEGRVFNEEWNSKYFFTENGGKPFCLICHKSVAVMKEYNVKRHYEKEHERQYKDLTGEIRKNKFRTLKASL
TAQQSIFRKQSIHNELVVHSSYIVAELVAKERRPFTDSEFVKRCLVAVAEKLCPETKTLFQDISLSARTCARRVEEIGTN
LFEQLKCKAKSFDCYSLAMDESIDITDTAQLIIFIRGIDGDFNVHEELASLCSLKGATTGNDLFIKVKETLNSLELGWEK
LKCVTTDGGRNMCGSKTGVVGRICAELQNIACDNPMVFHCIIHQESLCCTILSSMKDIMNTVISTVNYIRRHGLKHRQFK
EFLKEIDSEFNDVIYYSAVRWLSRGAVLRRFFNLREEIDIFMTEQENTILQLSDQKWIMSLAFMVDITAYLNELNLNLQG
KGKLLADLFCDINAFEAKLCLLKKHMIEENLTHFICCKSVPADGWQTQKGTFVSVIEDLQTQFSTRFMDFHNKSSEIRLF
LNPFNVDINDVPNELQMEILQLQHNEILKNAFLLENIQHFYRCLPKQYEGLISFAKKMIVAFGSTYICEQAFSAMSFRKN
KFSSQLTDEHLHASIRICTSGLKADIDNLAKDKQPQKSH
>HAT-19_SM#DNA/hAT-Charlie 304-1486 via tfasty with 47212124_Tni, 1 frameshift and 1 stopcodon. (fragment) [Schmidtea mediterranea]
SSNRTIDLYYLLIQFLHQSRRSFSFKSTTEISSVVSPCKTEYQFQTYKEDHSPYDFADLALAQIFTSFGNVISAKVIxIV
PLIRAKILSFRIYVFSLYAIVHSQLEDNDSEYEDLLLFCHVRWLSRGSFLERFLNLLPEIITFLDTMGEKHEQLEDPVWV
KKLAFLTDFMGHYNSLNLQLQGKGKNIIELVSSVNAFKAKLKLFASQLKRQNFKHFPYLEKHIKLAGECNIEIFCFELEN
FNQEFEKRFANLNNLQPIFEFISFPFGEIDNENISSNIAHTFQLNSSNLELEILTLQSDIILKSHANENNFWNLLPEEKY
PLLRSVAMRIFAFFGSTYLCEAAFSQMKNIKSQFRSSLTDDHLMASIRLCISDYKPNFTRLVDEMECHTSTSKN
>hAT-39_SM_tp#DNA/hAT-Charlie 934-2868 via tfasty with Charlie1_tp, 1 stopcodon. [Schmidtea mediterranea]
MDLWLKTGNSTKERPNTSTDTSIIEEENNPKTVISSKSNIKEQMSSTNVIxNRPKRKYDESYLNXGFTSTGNSDAPDAMC
VLCXKILANSSLAPXKLRRHLETTHTDYKGKDMQFFKRQRDSLEKSKLQMITMAKTENENATEASYRVSYRIALNGEAHT
IGETLIKPCAKEMVSCVLNEQATKKIDAIQLSNNTVSRRIKDLRTSIEKELIRXLGLCSEYALQMDESTDVAGLAVLLVF
VRYTYDKSIEEDLLTCAYLHGKTTGEDIFNCIDDYITKQEIGWEKCXDXCTDGAXAMVGKMKGVVSRIXKVATRATSSHC
ILHRXALLTKKIPTNLKNVMDEAVKMINYVKXRPLQSRLFKILCDEMXSGHKALLLHTEVRWLSRGXALLRLYELRNELL
VFLKEQNDSRHNFVEFLXNPSWLIXLAYLANIFSKCNDVSLSLQGKSITIFNTRDKIESFDRKIQFWISSVESNNFDCFP
VLDECLNALNFQXDKEISKVFLEHLYNLKTAISEYFPKTSKDDSWVRNPFSVTVKPVGLSARDYEHLIDLINDSDLKEKF
KDQPLNDFWASLTEEFPNVSKQAVVCLLPFSTTYFCEVGFSKYFATKTKYRNRLDATADMRIQLTNIVPDIKKICNLRTQ
NHQSH
>hAT-34_SM#DNA/hAT-Charlie 465-2267  [Schmidtea mediterranea]
MSKKRKYDESYVKYGFCCMKESDDVEKPQCFLCGKILANASMKPAKLIEHLKSLHPENASKDLEFFTKKKAQFSKSGTLT
KLGFGIPQKPLVEASFRVAYRIAKSKKPHTIGETLIKPCALEMVELVCGLEQRKKLEAIPLSNDVIQSRIVEISCNILKQ
IINELKASPFPFSMQLDETTDISNCSQLLVFVRYVSADTIKEEFLFCEPLLQTTKAVDVLAILNVFFSKHDFDWKQKLHS
LCTDGAPAMLGNKSGFAHLVKKEAPNVIVTHCFLHRHALATKTLPTSLKDVLSIVIKTVNFIRSRALNHRLFKTLCQEMN
AEHEVLLYHTEVRWLSRGQVLKRIFKLKTEVSLFLEEKDNSLFEYFNNKDFICKLAYLADIFNHMNDINISIQGPDTTIM
DATEKLQAFLSKMSVWKIRIQNGIYANFQMLDEFIFENGSRQDSLLLNNLKDAICEHLEVLQVSFEKYFNLDEITKKDEL
WIRNPFLCDIDCIDDMDLAKDELIDLKTKSLLKMDFDSKTLGEFWSSLREAYPLLVKRAMAAIIPFATVYLCESGFSTLV
TIKTKHRNRLNVEHDMRVALSKTIPQFNLLIKEKQQQHSH
>HAT-4_XT_tp#DNA/hAT-Charlie 1466-3260 via tfasty with OposCharlie1_tp, 1 frameshift. to replace 47185375_Tni [Xenopus (silurana) tropicalis]
MSCPKQRKVDGECRVFNKEWTAKYFFTEVRSKAVCLICQETVAVLKEYNISRHFSTKHANYAKNQSTQERTATSQKLTAS
LQAQQNTFIRQTTIQESSMKASYLLAFKIAKTSKPFSEGEFLKECMVETAGLLCPESKNKFEKIGLSRRTVTRRVELIDE
DLASKLNKKAESFTLYSLALDESNDIKDTAQLLIFIRGINDNFEITEEFLAMESLKGKTRGEDLYDSVSEVIKRHKLPWS
TLTNVTTDGSPNLTGKKVGLLKRIQDRVKEDNPAQEVIFLHCIIHQEALCKSVLQLDHVVKPVVKCINFIRARGLLHRQF
ITFLEEIDNDHQDLLYHSNVRWLSLGKACQRVWELKQEIVSFLEQLEKDNDFPELSDRAWLCDLAFAVDILTHMNELNVK
LQGKDQFVHEMYANFRAFKTKVALFSKQISNKSFAHFPTLATMKEAPQHVKRYRKSLDNLHGEFCRRFSDFGKIDKSLQL
VSLPFTQDPETAPHELQLELIDLQSDTILKEKFSSLKLNEFYASLKAAKFSNIQKMAQRMLVLFGSTYVCEQTFSVMNNN
KAPHRSQLSDEHLRIATTKLIPDFDALAKKGDQQHCSH
>Charlie3_tp#DNA/hAT-Charlie 625-2520 [Primates]
AHKLTLAKMSKKQTSLESFFEKGERPNDETAEDSKTANKKKAAFKRKYQESYLNYGFIATGDSHSPSPLCIICGDRLSNE
AMKPSKLLRHMETKHPALKDKPLEFFKRKKREHEEQKQLLKATTSSNVSALRASFLVANRIAKAKKPFTIGEELILPAAK
DICRELLGEAAVQKVARVPLSASTITRRIDEIAEDIEAQLLERINESPWYAIQVDESTDVDNKATMLVFVRYIFQEDVHE
DMLCALLLPTNTTAAELFKSLNDYISGKLNWSFCVGICTDGAAAMTGRLSGFTTRVKEVASECESTHCVIHREMLASRKM
SPELNNVLQDVIKIINHIKVHALNSRLFAQLCEEMDAEHTRLLLYTEVRWLSKGRSLARVFELREPLQRFLLEKQSPLAA
HFSDTEWVAKLAYLCDIFNLLNELNLSLQGRTTTVFKSADKVAAFKAKLELWGRRVNIGISDMFQTLAEILKETEPGPSF
SQLVHDHLSQLSKEFEHYFPTTKDPRTGKEWIRDPFVNKPGESTLSVLEEDQLLEIANDGGLKSMFETTSNLHTFWIKVK
AEYPEIATKALKSLLPFPTSYLCEAGFSAVTATKTRLRSRLDISNTLRVSLSPITPRWDRLVAGKQAQGSH
>AeBuster1_tp#DNA/hAT-Charlie 493-2409 [Aedes aegypti]
MDKWLLKKPKSEDLEAEKKNNADIVAGPSGGGTRRKLEEELPSTSAKKKTRQYDSDYLQYGFMEDLKDKFPRPQCVICLE
VLANESMRPNKLIRHLETKHPEFKDKTLDFFTAKVKALNCSRDTIQAYTKVSDKAMVASYHLSLKIAKSGKAHTIGENLI
LPALKETVSIMFGPKFAQEIESIPLSNNTVARRIEDLSGWVENELVERIKASTHFSLQLDESTDVEGLSQLIVFVRYFWK
EDVHEEMLFCEPIMRGTSDEIFDKLNSYIKANGLYWENCIGVCTDGARAMCGKNSGVVTRILKLSPNASWTHCSLHREAL
VAKTLCDDFKNVLTTTVKIVNFVKTKPLQSRLFEKLCEDMGSNFTSLLLHTEVRWLSRGKVLTRVVELREELATFLEGKE
NFSTLLRDKDFSLKIAYLSDIFQKLNHLNTYLQGSTSMDIFDVHDKIRGFMRKLDLWSRNLKNGNYDCFDSLQTLIVEKQ
FKPSSTIINGILGHLKSLKEKFGEYFDGEMKKTEKNLWIVDPFNQNEASTNISTKADEELIDLSENSTLKINYDRKNILR
FWISVRHMYPCLYEEAVKFLLPFTTSYLCEAGFSEMVAIKTKYRNKLRLSPSLRLKLTGIEIDVSQVIDNNRKQSHPSH
>Charlie9#DNA/hAT-Charlie 534-2510 [Eutheria]
MDRFIIRRKKNDEVKNTEACSSSTAGSGSVNSDNIEKNVDSNQQTSTSFEPHSKKKKVSARLYNEDYLKYGFIKCAKPNE
NDRPQCIICNDILANESLKPSKLKRHLETQHAELVDKPLEYFQRKKKDVKLSAQFLSRSTTVNEKALLSSYLVAYRVAKE
KMAHTAAEKIILPACMDMVRTIFDDKSADKLKTIPLSDNTVSRRICTTAEHLEAMLITRLQSGIDFAIQLDESTDIASCA
TLLVYVRYAWQDDFMEDLLCCLNLTSHTTGLDIFTELEKCIVGQYKLNWKNCKGITSDGAANMTGKHSGVIKKLLEATNN
GAVWNHCFIHREALASKEIPPNLMDVLKNAVKVVNFIKGSSLNSRLFEIFCSEIGANHTHLLYHTEVRWLSRGKVLSRVY
ELRNEIHIFLVEKQSHLANIFEDDIWVTKLAYLTDIFGILNELNLKLQGKNNDIFQHVEHIQGFQKTLLLWQARLKSNRP
SYYMFPTSLRHIEENIINEDSLXEIKLEILLHLTSLSQTFNHYFPEEKFETLKKNIWIKDPFAFQNPESIIELNLVPEEE
NELLQLSSSFTLKNDYKTLSLSSFWIKIKEEFPLLSRKSVLLLLPFTTTYLCELGFSTLTRLKTKERNRLNSAPDMRVAL
SSCVPDWNELMNRQAHPSH
>HAT-4_SM#DNA/hAT-Charlie 505-2286 [Schmidtea mediterranea]
MSKKRCWNDDYVRYGFTFTTEKDGTQRPQCILCCNKFSNANLKPSKLNEHFTKQHGGVDAGYDFESLKSKRVRFDKSGTI
TTFGFISHEKPLLQASYQVAYICAKKKKPHTIAEELVKPCALEMAKIVLGTEAQQKLQQIPLSNDVIRTRISDISKDILQ
QVIEDIKASNVPVGIQLDESTDVENCSQLMVFVRYVKEKEIVEEFLFCEPLELTTKGIDIFNKVKDFLLQYEIPMNKIGS
ICTDGAPSMLGKNSGFVAYVKKEVPHVTITHCILHRHALATKTLPEKLKKTLITSVKVVNFIRGRALNHRLFRALCEELG
AEHTVLLFHTEVRWLSRGRMLNRVYELRSEIMQFLNNQGSSLADEFSNRDAIIQLAYLADIFTHLNELNISIQGFGVNTI
TAKEKLTAFSRKLSIWINRVDKINYANFPLLEEVLVSDDERNNITTEIKDHLQKLSESFEGYFATGDIDISEKWILDPFI
YNLDSMDDSNLLKDDLVELRTNGHNQMEFEAENLESFWCAQVMSYPRLAKIALQHLVPFATTYLCEMGFSSLVHIKTKAR
NRLNASNDMRVAISKKIPRFSKIIEEKQQQKSH
>HAT3_CI_tp#DNA/hAT-Charlie 427-2238 wised with Charlie5 and Chaplin8 [Ciona intestinalis]
FNAEREVDYFFVYSYSKPVCLICNATGGGVGKKXNLVRHFRTVHRCYERDFPAKSQLRAPKVRDLKAQLVARQSIFTNLK
TQGKAATVASYRISHVLAEHKKXWQKVVKEAFLEAADSLFNNFNNKTKIVKSIEEVQLSRSTITRRCEVMAVDVEEQLGK
DVDLCQFFFLQFDESTDMVDVAELRVFLRMVFEDMSAKEELLTILPLKRHTRGEDIFNTFKEFVNEKKLPLCKLISITTD
GAPAVIGRTNGFIALCKQSESFPDFLNYHCLIHQQALCCNILNMKEVMDVAVKIVCSIRARSLQRRLFRAHLEENDFQHT
DLLLQTNVRWLSRAKYLARFIELLLEIKTFLRLSNRVEYHTKLDDHQWLLDLSFLTDLTGELNVLNIELQGKDKDVANMM
SSVNTFKSKLQLISSRLQRDDLRNFPYMQAELLRQGKRVTQLKTACYKEQVQRILLEFERRFADFSSXRACSFMCYSFTA
SIDVGCIAAKIESLFGLEISALEEEVLKLQNDIEIKARSDSAXLDSTWCSXRFLGEGKYPNLRICALNLTALFGSTYLHE
SAFPHMNIIKSKYRSTMTDAHLATSFYTPDYEKLASTAQCQISH
>CryptonF-5_PI_pt#DNA/Crypton 2687-4716 R, 1 frameshift & 1 stopcodon Has Peptidase_C48 / ULP1 domain. [Phytophthora infestans]
MRCHRAFWVYASDNGESISKKAATFAQQQAAQEQPGANKTAENWLRSRAGRSLKYAWLNEPPITRQKYYLENPDDGFPLE
DSPTGFRDGRTDRSRYPRMICADVERPQVLQNSVSGAQVRAHMPIDPSVSEQLRGFERRRRKLLQAAIDAETTALAFATK
QKDIRQVISRSAALVECLGGQIAVMVPAQVRASVLSVIAEAVMHVKGAATQMVMYSENEANDALLQMQTCVINANTSLEK
YVRDAAETSRIFASIYDGRENYATTTTKHLKNLYWMGEEKPEEILQGIGGLPANITLVNSAAQHQSAMAATVSDASVALE
TPARASSPDEVAPVHRRKRLRTPPVTPQSSPPSVSNSLGEVARDVSADVSAAALGGDTSSGDNDCGNEPGSDEDLNVSEA
IAVESNSDAEFLSGGDMESDESSNSDVSVFEDANVGKADTIVSHRFFRKRFPKNDAILVWTDLEDSENSRTVHVFPSDLN
SLEADSSLTQTALDFFIYRDVPRVNGVVCPCGSGLYVLMEKARRTHKAVTQQRLFDDLVALFNWSYQYLLLPVSGRNHWS
FLIIENFMHAGPTKVYHVNSMRKAHSSAYAFDILNCFLSKVHRAKSDTATTFEWSTFVXATKPQQSNSADCGLYALHYMN
AFQADSSxEAKSMEDLIAGWTTGRFNATKASVYLYRAL
>CryptonF-3_PS_yr#DNA/Crypton 167-3180 via genewise with CryptonF-1_PS_yr, 1 intron (1849:2819) [Phytophthora sojae]
ESLMRVAxDESVRRTYEKASNIRPQNTSRAYTSKQDEFKRWCDDKGAAFSDLTRYTVTGPKLHLFLVECVIGREKRRKGH
GGRSEKVGKSTVNSYVAAMVDLWRQQKRLNINSNPSPRDGAVTALLKITTYEEDQLRRKNFADRGADTLLDGYTTTDQLQ
QIARYFWTSSHDPGTSMRNLLAFLLSHYALMRGESARLMELADLHSIVLENEGYSVCRALVMVMTQGKTNQVGRIEVGAC
MRSKKVEICGHGLLGFYLFWRWHVDKESFPDFTKSEQWYPIKLLKTGKDPTKPMSYKVHRAAIVDALDHIGLRSRAKTHL
GRGSGSRMADLGGASEAQIRRLGRWNTQAMEKCYLTSLPREAMRTLAGFEPGRGSYFLARTCVDPPQALQKRIFPLVEEW
QSKMTSGECEQSIAAGGFLELLQYLRTVILQDAAIWSEQMPGHPIWNNEIFKSDDFKQFQLEMKNAMNHVSDPTERQLEK
AMPALKSTLDGVRQEMRASLSGIRNSLDAVGESVADVMEVLAPLRNGSAFVEVKIVNGLQSTTPSATQAASGASTGSSTV
VTPSDPSAITSYRLSRGIQSVRELWTEWTCGLPGGCALPGGYAVETLEQQLGTKWCDHHERRFFNRRRKIIDLVKTIASW
VCNHEAFDKYQAVEEAIKRVDSIRCIRKKSLNWVSQNVAAI
>CryptonF-5_PI_yr#DNA/Crypton 125-2312 via tfasty with CryptonF-1_PS_yr, 2 frameshifts. [Phytophthora infestans]
MIGQQADQRPSTISRRKKKSDSAGIQVQIMAAEARMSVEMQESIQRTYAKAKELRPKNTTRSYDKRQQEFLEWCTNKGNS
FNDLSRFTVTGEKLHLFLEECVIGRRKRQKSATKQADRVETIGRASVNLYVAAMVDMWKQQVQAGINSYPSPRNAAVTSL
LKLTQFEEDERKRKNFEDRGADTLLDGYTTTEQIQQIARYFWAMSREAGASLRNLLAFLVSHYALMRGESARMLELADLH
SIMLENEGYSPCRAIVMVMRQGKTNQVGRIEVGACMRNKNVEICPHGLLGLYLFWRWHVDGEAFPDFTSSDRWYPLKLLK
TGEDPKKMMSYKVHREAITAALKHVGIRSKAKTHVGRGSGSRMADLGGASESQIRRLGRWNTQAMEKCYLTSLPREAMRT
LAGFEPSRGNFFVARASVEPPRVLQSKIFPQVEKWQHAISDGKAEQSIAAGGFLELLQYLRKVVLQDAVFLQDLTPHHPV
WQHDIFSSDEFLKFKGEARKTISTMENPADQRLQKAMPILKAKLDGAHSIDRVGSTVDVIEENIADILRTLQPLRGGTAI
LQVKLVSNPENSVAAFPSCSSAVTSRLIDDQPSTSHYKMRRGLESVKELWEEWDVGVDGGTPVRELEERYGTKWCDADER
RFFNRRRSVLNFIQQLSCEAQRYTGAGAEVATQLAVQYLDDSRKMRRKTLNWLSKNIALIHDEVKSRLIARISLDQAATQ
PCINQRGQPL
>CryptonS-2_PR_yr#DNA/Crypton 300-2327  [Phytophthora ramorum]
MSLNDLKPANTKRARATAIKAFNRFLSAESTSMEHVKALIVADPSRAGGILVTLMDKFGVYLAFHAGARGLHLSRHSVAQ
YFRQAKCWLLDEYPVQGGAVARQLLSLGRTLEQHCIKRESGGFVKKAVACTKDDLKKMTSYLYSTACCASDYQDAALLCL
LWYLFGRASDLTFVRKQQLTIGAGGVFFIRFIRVKTSDEQTLSLFPDEDFMTCPLLALALALITQESPCAALLNXLPVQS
KDVPVELTDSIPLLDLLEDSGALDSSQTSKRSTAVHTTPTVGVHALVNRLLDRVVGPAGVEEPLTSHSFRRGGAQHANAS
SELTAQWIFDRGAWNLTTTNKAFAYVFNTPKEDHQVAKVLSGMAPKQASVLPSLDVFDSATQEDIREVSRKLFNASHALG
NKAFNVCAAVRDVLTATIFLHYPSLMKTNAQAPAMKTIQRCAVASGVTTTSLLAWSQQLTRSKXQANTTAEDLMEGNVKA
KVAFDHQTALIERLIEVNRSLEARVNSLEAASTNTEAKTSAHDGQTKRPRDEDESVPVKRRRRSKTIPLIDTWFAWYTAV
PRGWLSTNKHKKSDAKQLVAFMKLFIEDGYTLDESSPSYKDNVRHLGELASSKVTAYLGARGVLSKGSNAVLKALRQLHR
EGSLNDLINAYHQRLASDRIVDPAPIHQQGTLKLLP
>CryptonI-1_RPro_yr#DNA/Crypton 361-1434  [Rhodnius prolixus]
MDSGDSCLENTPPSIKEKAENVISNLLPKKSKDRYTSCYNNFKKWCADKKVKNTSENILIAYFDEISSTLNSSTLWSVYS
MLKTTLNINDNLDISQYKKLKTYIKRKSEYYIPKKSEIFTREEINKFLHDAPNDMFLMMKVVFVIGISGACRSCELVQLE
LSQIKFLEDFITINIPNTKNNVQRTFFISNEVGLYNFKQIFQQYINLRPKHTKHPRLLVGYNHGKCNIQPVGINTISKIP
SRIAKYLKKDNFQRYTGHAFRRTSASLLANEGGDLIQVKKHGGWKSSTVAEGYIERSMAAKQNTAQLILQGQPHFSTNQS
LPSTSTSSNSNLTLNKSSNQPFITNANNCNITINIYNK
>Transib-19_HM#DNA/CMC-Transib 811-2978 via genewise with Transib-3_HM#DNA/CMC-Transib, 2 introns (1112:1305, 1395:1532) [Hydra magnipapillata]
MKNKEITQKLFHALENNLIKSVTDPDAYKVTGISDIDFKLFSKQFNKKWNKVNRHKDRFELHYKIWLEKELQTSDACFET
DKLDKGQNSGLAFPTSSHNLEKTNIAVEREELFYSLILKLKEEKRFSDAKVVKQILKSEKDGAVNSTTMYTGEEALALIL
DCRLSKADYQTISTIRIGAVSKGNKLYPTYNEVREEKDLCIPRCGIQTTDYSASVDLQSLIDHTTYRLLKILNESVKAPE
KSILVFIHKVGFDGSTGQSLYKQSTEDKISISYVEEQSLFLSCIVPIKLYIEESGESLWTNEKPSSTLYCRPVRFQYVKE
SAEVITQEYISFKNSNLKPTIFNSFVIKHKLECTMVDGKVATIVSPLSNSFQVCSICGXSPSNMNNLNVAFSKIYNTVST
ELGLSTLHAWIRCFECCLHISYRIELGKWQIRGEDDKEIVIKKKIIVQQKMKDYLGLIVDVPKSSGSGTTNDGNTARKVF
RNYKLSAEILGLDKNLMKRFYVILCVLSCKHQINADELEKYTKETAELYVSLYPWFPMPQIVHKILIHSSQVVRDKPVPV
GLLSEEAQECQNKDVKNYREHFTRKYSRKITNEDVMRRLLCSSDPIISSLRR
>Transib4_DP#DNA/CMC-Transib (fragment) 1-1305 [Drosophila pseudoobscura]
VKFLTADLTLSYGFDGSSGQSNYNQGYSGDEAFDMDSSILATTVTPLRLVDSSGNILWNNRTPQSIRFCRPLRLAFMKET
KECILKENSDLKEEIKHLRPCKMIMEDGKFVYISFNLQLTAIDGKVLNALTGTKSTHACPICGALPSDFINNKNFQCEKF
LPILSNLKYGLSPLHCWIRMFEFILHAGYKCNIKKWKICNQSDKMEVYERKRHIQELFWEQLSLKVDRPKTGGFGSTNDG
NTARRAFSDPNIFSKITGIDEQLISNLRIVLICLSCQLPINVSKFKQFCYKTAEIIIDKYPWLPMTATVHKILVHSSDIM
ESTVLPVGYFGEEGAESRNKLYKSDRLHHARKCSRMHNFTDVFHRAMDTSDPIISSVNLDRRIQRQNRINLPTEVLEMLS
SEGSPLEDHGRNETDYDDNFGLQWSMEVENEEHEA
>Transib3#DNA/CMC-Transib 543-2610 via tfasty with Transib2, 3 frameshifts. [Drosophila fruit fly genus]
DKFEISRSVLLDEWIKGDRNDKALVDWVVGEFKLNDITIDEKAKIAKQIRSFHLYIMKNLAKCNRTIEALKKKHSSWLSS
TMMVVVDQNNNQVASDCLMGRPRLSYSDAGSRLKRKIATDLANIEENNTSLLVHAASISAKKEKMGDTAFVLKQTISTST
ASTEIRKKLIFSEPVPLTPIQALAFLIDSSLSKAKYNDMRALNKTQFSNIYPSYNKVREAKLACRPAGVHVTETFAQVSF
QNLLNHTASRIILMQEEVFRWHENITGVKLMASYGFDGTTRQIMYKQRFLEDESHFKDSIFVNSHIPIKLTDDFETPLWI
NRSTQSVRFCRPLKIEFAKETKELILEEKSNLESQIKNNVTDFTYNFSIDRKIVTFSLHLTLIDGRGLNIIAGKKSCQVC
PICGDSPMDFIKTTEISNIKAKIENRNYFISPLHAWIRFFEFVLKISYKLNLEKGQKRDKEERDMITSRKQELQQLFFTQ
MGLHVDEPKRNRSGNTNDGNTAKRAFKRTRQLSSIQGLKYDILHRFYIILVAMSCEFRIYISKFKTMYMDHYKWYPMSAT
FRKVLIHGPQIIASSLLSIGCGENASEARNKFYKRDRRSYSRQISRVNNLTDVFHRSMDSSDPLLSSLNINKRSSQNKKI
ALPKEVINLLDAPNVEHINNEHFLGSDDSDSDSDHDDPFSMHLDVENFD
>Transib-1_DAn#DNA/CMC-Transib 456-2666  [Drosophila ananassae]
MLNNSRHFILNFNNSFVCGFLRLFRCYNYLDVLEFCHATLLDVWMDSGRHSSALTEFVFGQIDQCTLSDDKRSEINKKIR
SFEIFVTSNLQKCSRNMRTFREKHSQWLLKSLKIHLENHSEMENLKKGRPKLTYDEGGSRLKRKLAGEVALKNENDTQLL
IHAASISARKSSEHSVAFLLANCNRSEAQATEAKRKLHTAEPIPLTINEALEFFIDNSLSKQLYKEIRQISKLHNCDIYP
NYKKVLEAKLQLRPVGITATETFAKVALQDLLNHTASRIVLMQEELFANLETVSSLKLIVSYGFDGSSGQSMYKQRFECN
EKDTSDQSLFVTTIIPLKLIDDAGSIFWNNRTPQSVRFCRPLKMEFAKETKDHILAEKNDLDRQIEHLIPFVLTILEERK
ITIAFDMHMTLIDGKVLNVLTGTNSCQLCSICGAGPKQFMDTIDQNSFKPKPGHLQYGISPLHAWIRVFELLLKISYRLK
FKKWQARLESDKRDMISKKEHIQKRMRQEMGLHVDKPKQNGSGNTNDGNTARKAFSNTKLFASILELDLELINSLHTILV
AINCEFAIDPQKFQKFSDKTIRLYTLHYPWYPMSPTLHKILIHGSQIIAASVVPVGCLGENASEARNKLYKRDRQMHARR
NSRINNLMDVFHRSMDSSDPLISSMGIKKRTARHKKQPLPQDVIELLEAPHHIVQSNTKSFVNNESFNDLLDDSDDSDDS
ESNEINPFSFELAVENY
>Transib-18_HM#DNA/CMC-Transib 861-2731 via genewise with Transib-7_HM#DNA/CMC-Transib, 1 intron (2170:2238) [Hydra magnipapillata]
QKKWKDANRGNIKFESKNKNWLTQDFKSTYSNNISKPDNSSQLHKIGGRPSCSFKDASDKTKRRRLNDIINNFSSDELLH
SARLKLRNEYNYEAAKQVAEISEPSSQFKKYTPDEGLALIIDGGMSKSTYQLMRNGAEERDCHIYPSYNDVRLSKAKCYP
ENIFVDDYSAHVPLQELLKHTVKRLCEVQAPVISTMLDGLTRLTLRCKAGFDGATGQSMYKQISSEEAGDRNLKKEESLF
ITCLAPLELSGFCNNKKVLLWRNEKPSSTAYCRPIRFSFQNESKAVVIEEAKYLESEIKKCGVFNFTFNGKELVVKSIIE
LTMIDGKIQTILSHATNSTQCCSVCGVSPKNMNNLEMVLKLDNSNNLELKYGLSSLHAWIRFFEMVLHIGYKLETQKWQS
RAIEDKENVMQVKKRIQTEFMNQMGLVVDFPKSGGSGTSNDGNTARRAFANYQSTAKILKVDETLLFYFYIILVTLSSGF
EIDTVKFKEFCITALKLYVSKYSWYYMAQSVHKILVHGHAIIARQYLPIGLMSEEAQEACNKDFKKFREDFSRKTSRIDT
NRDLVNRLLVSSDPVITSLRKCHKKNGKSLKKYPSEVLALL
>Transib-3_DAn#DNA/CMC-Transib 539-2620  [Drosophila ananassae]
VYPGTYVFGHGALLAIWESNKRSREALETYIFDKLNDDHQIETINQKISNKITNFINYINKHLPRCCRNIKRFRQKHAMW
LAGNMTIRLFDINESPQKKGGRPKLTYEAAGKRLKIKLASELAIENQNSTPLLLHAANISARKSTENEVIKKSDRTGLLA
PSPITPEKAFAFFMENGFTKQQYINVKQLSKQHGCDIYPSYSKIAEEKLKCRPAGIECTENEAKVSMQNLLNHTASRILL
MQKEVCEILSDVTQCTLIFSYGFDGSTGHSLYKQKLSIAESQSLDDSLFVTSIIPIKMIDQKQRVIWLNKSPQSIRFCRP
LKIAYLKETTSLILEEKENLDNQIKNLDLYVHAFQSNAIFVKFDGHLTLIDGKVLNILTGTNSCQSCPMCGAKPTQLLTT
SDFYSKIFVMKPHTDQYGLSSLHAWIRFFEFLLKISYRIELRKWHVKGNDKIELEARKYKVQAAFWKDMGLHVDKPRQNG
SGNTNDGNTARRAFSNPKLLSSILGIDHNLIQRLHIILIAINCHYPINSEKFKLFCFETFTIYRSNYFWYPMSPTVHKIL
VHGYIIIEKSIVPVGSLAESASEARHKLFKADRQNHARKCSRIDNMSDVFHRAMDSSDPLLSSSWFTKTNRMPLPAEVVD
LLDSPIISPGVGHKNGSTSQNSCAEDTDEENGNDDVSDTFEIELEEEVPDDIEN
>CryptonS-4_PR_p2#DNA/Crypton 2447-2957 Contains CHROMO domain also present at the C-terminus of retrotransposon pols. [Phytophthora ramorum]
MPSTKPKKNDISSAKEFKTLCIAARKAYKIRVSDEAIRHLRLTMNTTVASASLLPEAIDVIFACVAERKKRCVGIDDVRE
WLAAPGPGGDDGSSDEEERSAEEDLTAEKLHYVCKLLNWKREKRQTYYLVEWEATWEPREHLSQTVVAAFEKERRLLVRK
KFIEEEAVEDN
>50901992_Osa#DNA/hAT-Ac gi|50901992|ref|XP_463429.1| Ac transposase-like protein [Oryza sativa]
MLEPTAMEVPITSSVNTAVVPVPVVHNPRARKLRSAVWQDFTKERRADGSCVAVCNHCKKQLTATSRSGTTHLRNHLAIC
TTTSTRRAGKRRKLIVRRILHNKTSTDGQSGDGHASGEDHDNDGTHFDQELSRRDLAHMIVQHGYRFSIVDDVGFQKFVK
NLQPRFRMVSYETVRADSMTIYESEKLKLQDALLKIPCRLSISVDMWRSNTQMDFLCLTCHYIDHANDEWKVRKKILNFV
HVEAPFTDDQIASLILEKLREWGIDRKLAAIVLDNCASGEIVARELLVVLQPRRLLLLNGNLFQVRSCAHILNLTVQESL
EQTSDIITRVREMIQNVKFSQERFEKFQDTAKLLQMDQKLLVLDSPNNWPSTYLMFDSACYYHDVLMRLAEQEAHYGAFL
TAKEWADVKALTEILDALYHKMEKFPVENPTANLYFNDMCEVHVLLNTWRNSPSPVVAQVADRMLTKFEGYWDLTRPVMA
FASILDPRYKMKSVEYFCRLIYAADQFRAKTTIDDIRQSFTNLCSEYEQSGNSFKNPSALFYSATSNSCMSSVYSNGDDF
KTFSRITLSDARRGLDQYIQETSSGQSFKSDLDMYLEEPVYRQKEGHLDNFDILGWWKSFAAKYPVLSQMARDILAVPVS
IIPLDSDARTLNEYLSTMDPSTVQGLVCAQDWLREDTEVASSDGHADDKAARGDELIVLPK
>40788364_Hsa#DNA/hAT-Ac gi|40788364|dbj|BAA34505.2| KIAA0785 protein (exapted gene) [Homo sapiens]
AAVQQAGSGGEAMENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNTSNLSYHLE
KNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDSKKQQELTAAVLGLICEGLYPASIVDEPT
FKVLLKTADPRYELPSRKYISTKAIPEKYGAVREVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSM
GSRCLKTFEVPEENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQQAFQLPKL
GALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEA
SEWATIEGLVELLQPFKQVAEMLSASRYPTISMVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMF
LNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNML
AEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCVTATRVAPERLFGSAANV
VSAKRNRLAPAHVDEQVFLYENARSGAEAEPEDQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
>50916102_Osa#DNA/hAT-Ac gi|50916102|ref|XP_468515.1| hypothetical protein  Probably skrewed up [Oryza sativa]
MGNITKLERARSHVTPRRTSRKVESASMSDKCEIQFQGASGGPEQQYDAYIHWFYYFHRGPAPLASLADAASTCLEKENS
MTLLWRTVKAFSYIQGSIVGECIVEWMRTVIKEKGEIEHPFGIDAAKEAELISEWLRHGRRMLTDDEYTLCHEIRAVACK
LFVIRGEWTVDIASALLGIRKEAEWLIENLKRFPVESISTSMKIRQFALDFVWEKIGEYASYKNKESSESEMASESDADV
TESNDNDYMVCYDEDYLKLGTRSRPLHPHTRQYLHDQSKSKVKTELTRYLEDIPQENDFPDDDFDILQWWRVNSCKYPIL
SRMALDLLAVPASSVASESAFSTGSRIISDYRSRLASGTVEALVCLQDWMRADGFGDPYSILTDTAEGDDDIKSFDISGK
LPCEFYAIWVLRNFASSGAVQYNAYLHWFYYFHTSLAPLASLVDAASMEAELISEWLRHGRCILNDEEYAFWYGIRKEAE
WLIENLKRNNVESISTSMKIRQFALDFLCEKYVEYGSFKKQESSESEMASESDEDVVEEHTYYVGDLHDEDYLKLRKKKT
T
>hAT-1_DRh#DNA/hAT-Ac 62-1345 Fragment [Drosophila rhopaloa]
HRCSVPNIDVFHLLSTQHLLTPTNHTAANIAETIKSVLDDWAIAQKVVCLVSDDDASMKKACVSLKYKHLPCVAHTINLL
VQDILKQPILEEILSKCKTVVSFFKRSSTAYAKFKAAQKTETPYGLVQEMPTRWNSAYEMIKRVILTNEYISVVLAVSHN
APSPLSAEEIDVLKEISILLAPCADATLSVSTNTNVSISLIIPVICELFHKVNGFDFKTIEGIAAADYMKIRLRERLFAY
ETRTIPRIATILDPRFKKQGFLAQSNSEEAAKALQEELNSVMTTTPRPQPAPPTEEPTRFSFLKTKMETTVQSLRADSII
LLRQHLEKGNQPEKCDPLAYWEVKLYMLSLLFFKYSIKQNILFQMSTDEPFKKISKKFLCIPASSCESERLFSKAGQMIS
DRRTRLSPSVVDKLLFLNKNKNINKIKI
>HAT4_CI_tp#DNA/hAT-Ac 1087-2896 wised with AF486809_1_Bactrocera and HAT2_CI. N terminus missing with a short match to these proteins. [Ciona intestinalis]
GETSSSSAGSPAVRQRRLDTYVHRPLTPQQAEXITNCIFTVIVGDLRPINLVEGENFQALIKHLAPGYNIPSRMTFMRKL
KQSLEICKAKIRDELSNANSIALTTDLWSSIRMQSFIGVTAHVISKDSAELRNFVLATKEVLEESHTGENIVEWIESILV
DYHVSPAKIVGIVTDNGSNMVNACEKLNDKHXCMAHTLQRCVKEAVAIGPIKSAIGAARHLVVYFCQSAKASAALRSQQT
RSGDNCDLILDVPTRWNSTYAMVKRLCRLQWMVRQVLCDTSITPRTKAMHLELKDANWVILQQLIDVLAPIKTASDYIEG
DQYVTLGSALPLIKSLAEKYNSNQGLETLQTPSHTSIMQAKSTMELSIKRRFPLFFANTGSXGPPSIFHKATWLNPMYQS
NVFYKTFGVSSERRXETEITTEGLDANETTQLRNTAKTRSQTSNDNPELCLQSILQCGVENAASSDDSIEEDCVAAEVSK
YLKDKTACTDPLVWWKNKKSEYPQLYLLILKYLCIPATSASSERCFSSAGLTATALWSRLTGEHLEALNILHCNRTLL
>38345535_Osa#DNA/hAT-Ac gi|38345535|emb|CAD41305.2| OSJNBa0020J04.10 [Oryza sativa]
MDDDPTSVNYELRTMGMRGDDDDDVEEDRVEVFGNTSDIPIHVNVDDDDPPVDDKGNGTPTGSSATCTNKKTKTSKVWDD
FEELYETTNGNRVRVFAKCNYCHKTLSARSSAGTGHLLRHIKSCKPRKLGSNALPQSMLRFSADGSVIPWEYSPEVARFE
LCRLIAREDLPISFGQSPAFVNYIKAAHNPRFVPVSRQTTTRDFYKLFKDRRSVIIDRLNSASSIALTSDIWSGHAKEDY
LSVVAHFVNSDWQLEKRVLGLRLIDESHTGANIAERVIAVAEEYGITDKVFSITLDNAYANSKAMDTLTPALSGYIGDLF
LHQRCACHIINLIVKAGLDKFKPMLNDIRAAISFLNASNQLIATYKNVCIAAGYRPRMFGLDMDVRWNSTYLMLKHLIPH
REPFTVFISTQHPFVNDHPLLTDLHWACAESVLCFLEQFYDSTVVLSGVYYPTSPLIMHHILEIARHLNTYGNVQNIANV
VGPMKTKFMNYWSKIPILYSFAFILDPRAKIRGFSKVLQIMAQLIGDDYSAYLTTVRASLSDTFAKYERKFGSVRLHSST
IPGPSTGKKRTAWGKIFGSVVAAGLGAGNAGASPGAGNAGASPGAGLGAAKDVMTVPVSTISSESTFSLTGRIIEDRRRR
LNPRLVEILAVIKDWELADAKSQHTTENVELQNAYENMYLDDEIDVNP
>Ginger1-1_AC#DNA/Ginger 190-3384 via genewise with Ginger1-2_AP, 3 introns (350:1147, 2042:2434, 2737:2792) [Aplysia californica]
MDELGEIFDYIVSKRYPNSVKTKGQKVNFRRRAGKFTVEEGVLKRAVKDDVKNAKYLRVITDRTEQIRIIRATHGGLGET
VESRSLGGHLGWDKTEGRLSKSVWWPGVRKDVRNYIQHCDRCQRRGPSLDKGQQLHPVKIPPKPWSQIGVDTCSLPKSKD
GFTCMVVAVDYFTKWMEAEPLVAKTAEGVANFLYQCMCRHGCAGIQINDRGREFVNSVSRALHKLSGVEQRVTSAYHPQA
NDLVERENRTIQGMMVKMLTEVSCVEDWPRALPGTLFALRTSKHATTKYSPFFLLYGREPKLPIDVESDSKKKNETESSE
NLETNTDVSSTLSRTIEAEGELNQNNGNESSENVMKNIRKAQERQSKQYNKRRAGQTFEVGDSVLLYNLRRADRKGGGGA
NCWTGPYEINRQLSNGTYEIKQNGLVLKNKANAQNLKXIKKRSRMKMNQKMKRESNSITSEDDVIIDSVEDGEAPKFNPT
DHVWRLQKTAELGLPSPKPMPDREPSNHLGSPNNTNSVRGDGNCFFRAMIVELTGLEDYHQDLRSFTVSFMRANAHSFAG
YLGQNVNAYLNDSNMEVVSTWSTDAEIYAMATLLDTVIYIYTLFGPTRRWIPFKPGFSSGNLSQSKSENPALYLTNLCAH
YERVVGVEH
>CryptonS-7_PI_yr#DNA/Crypton 206-2263  [Phytophthora infestans]
MGLAELECGNTKRAKATAVATFKKFLKTENVSDEYVRTCIERDETGKCFVSVMDKFGMYLAFNEGKKGKPLARNTSMQYY
RQAKLWLLEQFPRHRPALEARLLKMGKTLDNFCMKRDGGGFITKAPPCSKGDLKRMLMYLYVNASCPSDYQDAALLCLLW
YLFGRASDLAHLRKQNLSIDAGKVLFVRFIRMKTSEEQGLSIFPDADFATCPLLAVALALLTQVAPSANVIDNLPEQPSQ
SAIELAPDVPLLEMLDHPTTTQGLTAPTSGLHTTPTIFAHVNRVLDRIAKPAGVEVALTSHSFRRGGAQHANACGQLTAR
WIFDRGAWNMTTTNKGFNYIFNTSAEDHKISKILSGHDAEAPVFLQKLKSFDAQARTKVEAAQRILFATCQDLGTTSHNV
NQSVLDVLTACVLRHYPLLKELSPEAPAVKRIEACVLHSGCSIAELLGWSSHLVSVASPCNKSSSDTKAQPTSQDGKQTE
DTSDQKTIRHQAAVINHLIEHTQRQDQRMDALEAKLNNDPMKPTHKRHHIHTAEEAVSEPKKKQRRSSVTHLHATWFAWY
AQEPRMWQAPISKQQKSDAKLLVAFMKLFLDDGFELDTAAHGYRDQVLDLXKRAEEAVLAFLAERKITSRGSAAVLKHLR
TLHRAGVLNSKIERHQRLLQTAAIRDPAPGYTQDVLEVVNNPGKQQ
>Ginger1-2_HM#DNA/Ginger 161-2186 via genewise with Ginger1-1_HM#DNA/Ginger, 1 introns (317:482) [Hydra magnipapillata]
MHSRFADIFSYLKYQIYPKEVLNKGDKANFRRQTKPFIVDNNELYHLNKAAKRKVIWSRDEQQNIIKFVHEGNDVSVESK
ALSGHTGINNTTYHIQSRFFWYGMIKDITTYVSKCDQCQKSKNRKLQSKPLLQNISIPKGNMKQVGIDLTQLPEVNGCKY
LVVLIDYFSKWVEAEALTDKTAKAVAFFLYKQICRHGCFEIQINDQGREFVNEISKELYSKTGTIQRITSAYHPQANGLV
ERQNQTIKRILVKVLDEAALEWPYIIDSVLFSLRVRKHKSTGFSPFALLYQREAVLPIDIDCNLIDFNDSNALSNDDFSN
KKIVSDTFHAMNKMKNKIFDDAYKNIEKSQKRQKHDYDKRIAPNNEISINKKVLLRNSRRDDRKGGKLVKPWTGPYIVTS
ISSTNNCTLKNLKGQILKTKYNLTKLCLYNEKITNDEQEITFDEINMQISNDKIGKYATIEMRTSISEKFGIGITKNIFI
ADINLLSRPKQIHKTIGDGNCFFRAISYIITGSECSYEIIREKVVKHMCTHINNEMTLYMNQSIITYLNESGMSDNTTWA
TDAEIIGCASFMGIDIKVYSKYGEKLKWLTYPCSLTLTQLSEHAIFLDNSTASHFNVVLL
>hAT-19_Crp_tp#DNA/hAT 353-2098 to be renamed hAT-19A_Croc[Crocodylidae]
MNAKKSSKTAKYVSALDRARQYPAGTLHADGGRLFCTACNVTLDVSRKTSIDRHLESEAHMKRKAAAEAEGQSKKQATVS
SLFKRTTESSLARREAAFSLVEAFAAANIPLEKLDHPKLRDYLNQNVPNAGSFPRANKLRQDYLPAVIASHVQSTKAALA
EYHSFSIVADEATDPQDNYVLHILFVPGSWTDRDLPVFQTEPVHLTSVNFSTVSQAIVKVIVSYGVDFNKISAFLSDNAM
YMCKAFSDVLQGMLPNAVHVTCNAHILSLVSDIWRTQFPEVDSLVSSFKKAFKHCPGRKVRYRESVASQSGDSHGTVPLP
PEPVLTRWNSWFNAVRYHAKHMQHYQQFVSEELEITPSTQCMLKLRDLLGRGDIQDQVTFVADNATRFMELLTWFEGRQA
VIHHAHNKLMDLISWVEDRASQELSSCPRENQRRRDLFQAIAVKLNQYYRYDPSLPPRFRQPAAPFLSAVRILDPNQVPL
LSCDPQLLKAIPGWGKEHDNERAAYVNFVKECQMPVPVPVFWDSVCDRFPHLYALARRCLTIPTNSVDAERAISVYGQVF
TPQRQRMSPATAAGCSMLAFNT
>Ginger1-11_HM#DNA/Ginger 1031-3161 via genewise with Ginger1-1_AP, 1 intron (2085:2157) [Hydra magnipapillata]
MADKNSSEIDDSRSSKKIIKEPNFYDIENYLLSGIFPEHLQGRENIGIKTNFKKQSDRFVIVNGMLHYKYRKIMKVTSGP
ETLCVVKDQMSRNQYKKAAHDGLGTSTESKAIGGHVGRDKTIWKLIDSGYWWPNMNKDVRNYVATCESCQKSNSKMKKVS
PELHPIPVPTKIWHQVGVDLCSLPKNPEGYVGICVVVDYFSKWIEAKPIYNKSAEEVSRFLYELICRHGCASIQINDQGR
EFCNKVSENLLNLTGTCQRITSAYHPQANGLVERANRTIQGSMLKVLNGEQEKWPHSLDGILFAFRTTRHKSTGVTPFQV
MYAREPVLPLHCINNDQSLIHDVPVDLDIEEGILEQADLLENLKGIKNIQSIIHDEVEKNIKKSQLRQKKDYEKRHKNQI
QFNIGDEVFVYNLRRADRKGDKGKSVWDGPYEVIETFIDKGLYQLKQKNGETLHTKHHGSNMKLSKKRSEVEILQKSCDE
VSDIKSESLEIVEVVISKTNSFIPTNSKWRTKKCSLLKISLTNKTPFKKGFAVRKKKLQLGKPISVDKIEGDGNCLFRAL
SQEVCLSQEFYKILRQLAIDTLLKAEYRNAFDAYISKPVLKYISDSKMETDQIWGTDVEIYALATALDTPIAVYYKPPEA
SVFSWFFYKPLLQNTNGFKLMEIKENDQIVYLQNTGVHYDRVLAVS
>HAT-4_NV#DNA/hAT-Tip100 1677-3578 [Nematostella vectensis]
MFRLHQNSKCHKQAVECVREIPAKCRDVSELLVEQTVKERENNRRYLSKIIQNLQFLARQGIAIQGAKETDSNFHQCLLL
RAKDDPSILQWMSKKTDKYTSHDVQNELLDIMSQQVIRDVANRIKTECYSLLADECTDVANKEQLTVCLRWIDENLNPNE
DFIGFYHIPDISSDTIVSALKDALTRSDIPLKSCRGQCYDGAGNMSGVKNGAATKIQAEVPQAHLTHCHGHALSLAVHDM
CKRSASKLLSETLDTTREICKLIKFSPKRQGALEKIKGELDLDAPGIKVLCPTRWTVRGDSFLRIIQNYVALANLWTDCL
SARLDSETRARIIGVQCQMKEFDYFFGLNLGNMLFSITDNLSKTLQKTKMSAVQGQRLAELTITTLSNMRSEQNFSDFYA
LVLQRRNSLECEISEPKLPRKRAPPKKLDDGSEPYHPPAAEDRYRTMYFSALDDIVMAITERFDQKGFKVYRIVEEFLLK
AVRGVDFTSEMATIESEYGTTDVNVRNLTSQIPIFRQLMEHKDVTHFDDIYKEVQSLDKPTRSLIGEIVKLCVLLLVNPA
TDAIGERSFSTMRRLKTWLRSTMGQKRFNSLAVLSVHRERTDKINLAAVANEFVRLNDNRRRLFGEFSVADFC
>hAT-4_Crp_tp#DNA/hAT-Tip100 603-3236[Crocodylidae]
MSGYKYKSGSQKHKEVKQRELKEAKGHQSILQFFKTDKAFLQSGSGNTLTREVDEQKQDGNDFNIETVSVATDDEEKLPD
ASCDSNLMLSKDSQVISPLAPLRSEEGLQKTGESSTTLSDSCFFKDPGLWPKLITDSVRQKIVLSGVLTFEEMWKLAKSI
PKDVGGHKFPEFLLKCKTSNGEQLPRDWLVWSPTNQALYCFPCWLLSEGRQKQCSMLAKSEGYSPNVKKWQKLYNELPEH
EKSIEHKTCYCQWKELQQSLSGGHGVDSEVQKQILTEATRWKEILERLLDVTLYLASRGLAFQGDNNLIGDPHNGNFLGT
LELIAHYDSITRDHLAKVKQKQTEGKTMQGQAHYLSWESQNEFTELCGKSVQKAILAEREKAIYYSIICDATPDVSHQEQ
HVLIFQFVVHNKDTGTFNIKERFFEFINFDLKNGEQIAEMLIASLKRHNIPLDDCRGQGFDNGSNMSGKIKGVQACIMSK
NELAVYSPCASHSLNLVGVNAAAACTETLTFFGCVQQLFVFFSASPVRWKIITDKIHCSLHSLSDTCWSARADAIRPLTK
HLPGILEALECALELNLTHKAQSQLEALKRYFSSFSCLLLASFWYKVLSSIDDRNKILQARGISLESEAALIADIIEEVK
QLRDQWPKILQEACLVAEGMGILPQLPKKRGKKQKRFHDDTAEESCSTISENDPESLFRRNVFDATLDNVIYGLERRFKA
TNNICFTFRSVLKYVTLEPEELDKASKCLLHRYPTDLSENFPCEMLHLKKNFKSTFGKEYELPPLILLNEIYKKQLQLIF
SEVCIAIRIFCTLPVTVAEAERSFSKLALIKNCRRSTMGQERLSHLAILSIECELAREIDFGEIIHDFAMKKARKIKL
>HAT-5_Mad_tp#DNA/hAT-Tip100 835-3393  [Malus x domestica]
MSFRKQLSGNMKRKKKAKDNEIAESLRGSLNKFFSTKNESVENLRENNVGEEPQNVVGESHDHENGSDLEENVGDESQDH
ENGGDVDLNVDDDHIGVEENIESPEPIFHLNIYDPRVWDGLNAEMRDLLVENGPIRETNLTYPKDKLSRKFSSHYYDRKL
PTGEIYDRKWLVYSKELDKVFCFCCKLFKTIASKSELAKDGISDWRHLGVKLDQHEKSKEHLTNSRTWVELKSRLTTNQT
IDKEFQMRIKKETNHWKQVMLRIIAVVKCLAIRNLAFRGTNERPYEDSNGNFLGLLEMIAEFDPIMQKHFRLIENKEIHH
HYLSHKIQNELIATLASKVKTAIIKKVKEAKFFSVILDCTPDASHVEQMTLILRCVDLSSRSINIREYFMEFLSVEDTSG
QGLFNELQDVLKSLDLDIDNVRGQGYDNGSNMRGKHQGVQKRLLDINPRAFYMPCGSHCLNLIVCDMASSCLKAKSFFGA
CQCIYTVFSNSTKRWNILLEHIDGLTLKSLSTTRWESHIESVKAIKSQVAQVRNALFTLVEITENPQLSRDAECLASGEL
SSFDFVLSLVIWYDILLKINMVSKKLQSEDMRLDVAVKALEALVTFFENYRETGFASAMRDAKEIALESEIDPVFQTKRH
RPRKRHHDEVDGNEREQQSAEESFRTDYFLVIVDIALSQLKHRFEQLKAFEYIFGFLFDAPKLISLDDQQLKENCMNLEA
HLKHGNTMDVDGADLCSELQVLQMMLPEEAFLSNNPWTSMEIANFVKETDMCPNVLIAYRVLLTVPVTVASAERSFSKLK
LLKSYLRTTMTQDRLNGLAILCIEKDEIEDLEYDDIIDDFASKNARRQFLKG
>HAT-21_SM#DNA/hAT-Tip100 762-3290 [Schmidtea mediterranea]
MSQRYKSGCEKRKERQKKLEENARGRRTLENLGFITLSKSQQDEKQNPSESINAKESDGIPTLSLSTYVADPSSSRTEET
TFPLSEESANCEMEEASTSESMDVNLLNIDIGLLKLNLMRKDVEEAIQRGPESHPATFPVDKQGNQFPVNLLKLRLKNNE
IVARDWLAWSKSKNALFCFPCRLFYNFREDQRSVLATELGWQPDRGYKKLYDRIPEHEKSTHHKSCYIQWRTVESNISKN
RTIDCLLVQQIRNEIQKWTDLLKRFLDVTLFLAERGLAFRGSSHLIGDANNGNFLGILELVSRYDPLLEAHLKMVKQSQI
EKQRLQVHYLSADIQNEFISCCADYLRTCILRERETVKYYSVIVDATPDSAHIEQTTFILRYVSVNNHSDEYEIKERFLA
FVNCNKKTGEDIANLILETLEKYNIPISECRAQGYDNGSNMSGSYKGAEARILQINPLAIFSPCACHSLNLCGVHAAESC
PEVVTFFGTVQKLYNIFSSSPQRWEILKNNTGRSLHSMSNTRWSARIECIKPIAENIPAIKSAIDSVLELNLTWEIRSDL
NGIKKYMESFEFLVMAKIWYKVLQAINYRNIVLQARDATIDVEVANLSSLLDELQTIRDSWETLFNECKLFGSSLEINTD
FETKRSKRKKWGNELEMTPSDKFRTNVFNVFLDCIIGNITRRFNAAKEIDSLFNVLWLFHNLNDEEIHTKSEKLQKVYEN
DIDDNLGEEILHLKSIYDANIQNKSLSPIELLNIIKKMKLDVLFPNIIIAIRLFCTIPVTVAEAERSFSVLKRIKDVLRS
TMSQHRLNDLGMLSIESEMAKKIDFQDVINLFARRKVRKATF
>HAT-6_Mad_tp#DNA/hAT-Tip100 764-3217  [Malus x domestica]
MKRLRTIDSFFKKRDDGDKLESDIPSASNDNAPISTEQPHDSHQTSNIIEPQEKVFDDASLELERDPGKRIQIHEHPINQ
QDEVRRAYIKAGPYRPKLLEYPRSRFGSQYRRFQYSWFSQFPWLEYSPTTDRVYCFPCFLFGTGPASRPTLTVDGFNNWK
RVNDGKNCIFLSHIGGPSSLHNTCVSRVEELMNPSQHVDKVINRQSKEEILKNRLRLKATIECVRWLTFQACPFRGHDES
VGSKNRGNFIELVKHTAKFNDKVAAVVLENAPKNAKYSSPMIQKEVLNILANIVRRKIREEVGDGVFCILVDEAHDIAHR
EQMAIILRFVDNDGFLRERFLDIVWVEDTTAPTLHREIKKVLAFHELPINKLRGQGYDGASNMRGQWNGLQSLFIKECSS
AYYVHCFAHQLQLALVAASKEVVVIWLFFSALGSIVNVITTSPKRHTQLQVAHTVNIEELVGAGELETGRGANQIGTIHR
PGATRWGSHYDSVCDLIHMYDASCTVLENIKNDRSATNSLRGEATGAYNAIRSFEFTFILHLLQEIMGITDILCRELQNK
SQDILNAMNLVTTTKDVLQKLRLDGWATFIDKVSLFCKKHDVDMPDMNAQYKVGTGRSCQQTDHITFEHHYHIDIFNNAI
DFQLAELNSRFSEEAMELLILSSALEPREAFKAFNIDHICKLAEKFYPMDFTEKELHTLRCELKIYESDVPHHPVFQKMS
TTSELCRGLVETKRSERYYLIDRLIRLVLTLPVSTATTERAFSAMNLIKTRRRNKMESEFLADSMVVYIEKELAEKIDSE
EITKDFNSIKDRRAQLE
>HAT-1_Mad_tp#DNA/hAT-Tip100 1120-3498  [Malus x domestica]
MERFFKRKSSSGSGSSNNVDSSNTVGSSRTPSSRQSQLDDVLGNLQADPGLRTRIIDYDANMRDEVRRLYLQKGPCQPRG
HNFPITNMSGINRRFIPQWFDEFDWLEYSVSKDAAFCLYCYLFKTNFEQVGSEAFTGDGFKNWKKGRERFKMHVGPVGSV
HNKAREAATNLMNQATHIETAVSKHSDQTRKAYRTCLIASIKCTKFLLRQGLPFRGHDESATSSNRGNYLELLQFLADNN
DKVREVVMENAPGNLKLLAPSIQKEIVNSCALETLDAIMDGLKDRFFSILVDEARDVSVKEQMAMVLRYVDDNGHVIERF
VGIQHVTDTTSSSLKDAIDTLFSRYGLSISKLRGQGYDGASNMRGELNGLKTKILREQPCAYYVHCFAHQLQLALVAVAK
NNIDIASFFATANNVVNHVGASCKRRDSLRGQLQEELVIAFENDCLITGRGLNQETSLKRAGDTRWNSHYGTLISIISMF
SSVVHVLQMVIDDNPNESAGEANTLMRVILTFEFVFHLFLMKVILGLTNDLSQALQRKDQEIVNAMALVKSCKEKLYWMR
NNGFDALVDEVSSFCEKHHIDVPNMEEAFILPGRSRRYAPIKTNRHHYRVELFIYVIDEQITELEDRFNEVNTELLICMA
CLSPKDSFVAFDKPKLLRLAQFYPQDFSDEDRLALEDQLEIYIHYVCSSSDFSQLEGIGDLAKKMVETRMHQVFNYVYLL
ITLSLVLPVATASVERAFSVMNIVKGPLRNKMGDQWLSDSLLVYIERDIFACIENEAIMLRFQNMKPRRGQL
>221106434_Hma_tp#DNA/hAT-Tip100 gi|221106434|ref|XP_002169806.1| PREDICTED: similar to 52 kDa repressor of the inhibitor of the protein kinase [Hydra magnipapillata]
MNGNIQSIDILINKEYEKEIALNREKLRPIVDSIIFLGRLNIAFRGHCDDSQYHPTIGKYSLVGGVGNFIELLNYRIRGG
DKVLEHHLNSCAKNASYISNLSHNELINCCGQYIQNILVSEIKENQFFSIIADEASDCSNQEQLSLVIRFIDKSYDVREE
FMGFLHCELGSTGEALCKTILSSLKDFSLDISNCRGQGYDGTSSATGHVKGIAKRIKDLNHKAVYTHCFSHRLNLSVINS
CKIQEVRNMMEHVKQLSYFFNFSESRQNLLEVAITEHFPFATKKKLIDVCRTRWVERITGLDDFENLFVPIVFCLEGMSL
NLESKCTKDTSSQASCFLKLVTSFDFIASLVITRTVLDYTIPVTQMLQGKTFDICDGLGSISALKSYISTLRSLIDDYHI
KWYASILCLASKVDVAEAKPRLSSRQINRNNVASSSTSDYFKKSLSIPLIDHLLSEVNYRFSDDALEAYDGLVIIPDKMI
SFVSKKIDWKIRFQSFVNFYATDLPCAISLSAELDLWERYWLLENICLPDNISSTLKSLPNNVFENIRVCLRILGTLPVT
SSSCERSFSAMKRLKNYTRSTMSSERLNNLAHMHIHKEIVPDVEKVIDLFALKSRRLNFTDKMC
>189528805_Dre#DNA/hAT-Tip100 gi|189528805|ref|XP_001923192.1| PREDICTED: similar to protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) isoform 1 [Danio rerio]
MPNFCAAPNCTRKSTQSDLAFFRFPRDPERCRLWVENCRRADLEEKTPDQLNKHYRLCAKHFEPAMICKTSPYRTVLRDT
AIPTIFDLTSHLGNPHSRHRKRIKVLTDEEVQKIKERRLESSIEQLSKKDSDAQDDSETTDDVPRLTPEQKDLREFLKSS
FEVMILIGRQSFPFSSNAREDEMRSREEWLFNPGNFQALLENRINAGDEFLRRRFESAAVNEEYCPAVQQRQLLDVCEKC
VREEILQQVRECRFFSIVTGELVDFPEGEHLPIFLRFVDQDNTLREEFIEFLSFEGEEVTVAERLESRLMKGWGLSMEHC
RGQAYAGSGILGTKMKVITAQLKEKYPMAVITPTSTCALNVHLANGMSLTGVQVVMSVLKKSNAFFRASPLLQTELDNAI
SILCQGNLEKESILKEGSRSTWTDLHNLFEMAVDLLEPLLLCMDSIHDNEDLKWSDQVTSDAYAISEALADFEFIVTLVI
LKNALSFTRAFGKNLQGETIDVFFAANSLTAVLHSLHEVSDNLEVYHEFWFEEAVNMATAMEVPVRVPRLFLRKQQTPDT
IEIQAESFFKEYLTQPVMEYITQEVKDIFSENHLKALKCLSLVPAVMGQMRFNTSEESHADIYRTDLPHPDTLPAELHCW
RIKWKHRGKEVSLPSTIYETLQHSDVKFFPNVNAFLKILATLPVLKLDGSHGETAQRRLQAYLTDTAVSQRCKNLAVLNI
NYHIKTDLEEMVQCYLKRYPEESKTD
>221125698_Hma_tp#DNA/hAT-Tip100 gi|221125698|ref|XP_002167555.1| PREDICTED: similar to zinc finger, MYM-type 1 [Hydra magnipapillata]
MYCHACWLFADFKAENYSKEWSDTSAGVYKWKKGMEKIVKHETSHQHQNAIRQYLLTKYRISNDKTVISGLISQECRQVE
KNREVLKRMIDVTLFLAKQGLSFRGHREHQHFKIGNKGTANNAGNFLELLTLLSKYDLTLENHLRYEKRNQLYLSHDVQN
DLIQSLASEISSTINNEVKLAQFFSLIIDSTIDISKIDQMSVSLRMVLKSGNVVERFIGFYTLENSNAEAFAELILSELE
KRNIDIKLCRGQAYDGASVMSGIKSGLQTRIKALSPNAIYVHCCAHVLNLVTIEAMSVNSEVQLFFGTTEKLYTYLTSSL
PRLHILQEHQKRLYESTVDTLKRLSDTRWASRKHAVDAIVESFSAILATLEDINLGESKQHIGNVRAEAIGLSSFISGKC
AELDLETEFKEKRVAKKKSMIGELWRDERIDDPTTRFKCETYFNVLDTIITQINERFYDFSNTVTNFDCLDPSKLSEENI
NSFKNLCQVYCNDVNTEEAIVEYETFKDVYASISPSLTTDLQIKDVLQFLIEKQMAPGLPNLSILYKIYLTLPVSSANAE
RSFSKLKIIKNYLRSTMTNDHLSGLALISIERELAETIDFNFLINRFALMKSRKKEFV
>Arthur3_Api_tp#DNA/hAT-Tip100 ref|XP_001945763.1| PREDICTED: similar to zinc finger, MYM domain containing 1 [Acyrthosiphon pisum]
MFLKCILDENDHVEHGVESDILDTESSAINDENDHVEHGVESDILDTESSAINDENDHVEHGVESDILDTESSAINDEND
HVEHGVESDILDTESSAINDENDHVGHGVESNTLDNETSANNVVNTTLDLNSEYPTDRGRFPDNLTDSNLKKQIIAYGPC
KPINKYLLKNVSLKNCGRYFSIDYYHLTTKTGMKIPRQWLCFSVIMSKVYCETCWLFANRLNANFKYNWIQGICDWQNLS
TKIMKHEKFHQHLEAVQIRLLWVKNETIEKNVEKQISIEAQFWKDVLTRLIKIILSLTAGNCALRGNEGKKNTDSEGNFL
RTVKLIAEYDPVLNKLLYNEEMKIKYLSWKIQNELIELLALNVKQLICDEIRNAQCFTIIMDSTQDITKVDQVSLIIRYV
IVDYEEKSFKIMESFLGFYPLIKHGAEDHVNLIYEILNNCKLDIKRCRGQGYDGASVMSGAYTGVQKRISDVVPSASYIH
CTAHSLNLVISDIAKSSQKVALFFDLVQDIFLFFSKSAPRWASLAFGEKTADQIRNKVLKKVCATRWEARHNAVYSLKCN
FINVLQSPQTNLHKACDLLQGTILSIEKMRDGYDDVVGSASELCHKWGISTTKPTTRKIYSKQYCGEIQGDRRLDVPEEK
FCIAIFYPLIDTALFQLRDRFKGLHSVSRNFEFLLPQNIVTMKESDIVKSCYDFISFYNNDVTSDLIRQLISLKEFIKNT
KIQTIQELSSFIIEYDLSSLYNQILTACIIYLSLPVTVATAERSFSKLKLLKNYLRNSISQDRLTGISILNIEKSRTKEL
DIEKLIHDFSNMKARKKNFLK
>221130118_Hma_tp#DNA/hAT-Tip100 gi|221130118|ref|XP_002160580.1| PREDICTED: similar to Protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) [Hydra magnipapillata]
SIISTQPEFRNILVRTQTSLNSSKNIVVTGEKRPLNNSLLQIPCSAVQKINLTKPSLSIKNFFSVNNKPLPVSSSSSVLS
NKFEKPISGVVIPKLNVNCENATTEDDCNEFDIGLFVDKVGKLSNQEKRNILLNVWILPSDYVFPKTNGHKCNPAWFKKF
SWLCYSKYYDGLFCISCVLFGKASSTSQLFHEYLFRFWSVENVRIISHNNTSPMHKTSIQIMLDFQAVISKKTVPINLQL
NKFLSDNISRNRQILFSISRAILFCCRQNISLRGHRDDAKHLALQCNNAGNFQCLLDLMALCGDKILSDHFKNGPKNATY
RSKTVQNELIDICADVVRSLLTNRIKKAKFFSILADEASDVSQTEQMAVVVRYVDECCKVKEDFLKFVSCNSGLTGVLLS
TKIKKSIHKLGLEMSYCRGQGYDGAGNMAGRLCGVAALILKDFPKAPYIHCYSHQLNLCVAKACAIPSIRDMMDHVRIVS
DFFNNSPKRLEDLSTKIVELCPKSSFHKTINVCRTRWIERIDGLEAFIELYPAIIASLTCIKEDETWNYKSRGDASAYVT
ICCSFKFIITLIIVRKLLGYTRPLTKTLQKVDQDFSKARDDVEILKNTLLSIRSSIEISHSEWYKEAVTIAATNYTLPSK
PRTCGQQTQRNNHQVDDISEYYRVNCLIPFLDHILTQLDSLFSLENLTLLDSFVIIPSSLISDKKWRKKVKEFAHTCNNN
LPEPSYLYAELDMWEVYWKNHSETAPKTISDSLQKCDGNTFPNISTILRILCTVPVTTCTCERSLSALKRIKTSLRNSMT
DDRLNGISMLHIHRNVEIDLNIVVDEFATAFPRRMEFKNILNSDE
>XP_215777.3_tp#DNA/hAT-Tip100 303-end Transposases-derived region of EXAPTED GENE gi|109468448|ref|XP_215777.3| PREDICTED: similar to PR-domain protein 11 [Rattus norvegicus]
VDSADESVSNDVMTATDEPSKLSSATGRRIRRFKQEWLKKFWFLRYSPTLNEMWCHVCRQYTVQSSRTSAFIIGSKQFKI
HTIKLHSQSNLHKKCLQLYKLRMHPEKTEEMCRNMTLLFNTAYHLALEGRPYLDFRPLAELLRKCELKVVDQYMNEGDCQ
ILIHHIARALREDLVERIRQSPCLSIILDGQSDDLLADTVAVYVQYTSSDGPPATEFLSLQELGFSSTESYLQALDRAFA
ALGIRLQDEKPTVGLGVDGANITASLRASMFMTIRKTLPWLLCLPFMVHRPHLEILDAISGKELPCLEELENNLKQLLSF
YRYSPRLMCELRSTASTLCEETEFLGDIRAVRWIIGEQNVLNALIKDYLEVVAHLKDVSSQTQRADASAIALALLQFLMD
YQSIKLIYFLLDVIAVLSRLAYIFQGEYLLVSQVDDKIEEAIQEISRLADSPGEYLQEFEENFRESFNGIAVKNLRVAEA
KFQSIREKICQKTQVILAQRFDSRSRVFVKACQVFDLAAWPRNNEELLSFGKEDMVQIFDHLEAIPAFSRDVCREGMDPR
GSLLMEWRDLKADYYTKNGFKDLISHICKYKQRFPLLNKIIQVLKVLPTSTACCEKGRSALQRVRKNHRSRLTLEQLSDL
LTIAVNGPPIASFDAKRALDSWFEEKSGNSYTLSAEVLSRMSALEQKPMLQAVDHGSEFYPDM
>Kolobok-15_HM_tp#DNA/Kolobok-Hydra 417-2233 via tfasty with Kolobok-4_HM, 3 frameshifts.  [Hydra magnipapillata]
KNRYAKSRAKKRKFHKLEKDSLNNSNALQQTVLSPHSPNNVSGSASGKKINLSLLDVENFDYIEKECNIIINSNLFSSLL
KTIGRCPKCYSSINIIHDINKKEGLSHTFLISCQDCTWTINFLTSKSIENKNEVIKGKKMKEINLRTVLAFRDMGQGYIA
INTFCRLMNMPPGMTKRGYHNINNKLHLAYIETSRQSTKKASEDIRREKLxEGENYDESSIVNVAVSLDGSSWFHxMVQR
RGYSSMNGIVTAISHGKCIDAAVQTKSCYPCKIWSRRKGTPAYENWKITHNCKINHKGSSGSMEFVGAVQIFKRSVKELK
LKYLTYIGDGDTKSYMQVCDANPYPGEIIEKAECIGHVQKRVGARLRMLRDRYKGNTLSDGKYISGKGRLTDKWINTLQN
YYGIAIRQNIDSLYGMKKAVAAVLFHCAQSDNLEQQHQFCPKGSSSWCKYHSDQKNYNSKCIPKAIIELIKPIFSYKDLG
SDELLKKCLHGQTQNVNELLNGMVWTRAPKRVHVEKTVVEIALASAIISFNNGVQGLLPVFEKCNVVPGYFTTKSSLNVD
YVRIKQNEIKSTGATKNRRKKLRAIKKGFIDQHNEAEDVTYNSGGF
>Kolobok-4_HM_tp#DNA/Kolobok-Hydra 418-2247 (Kolobok-6_HM_tp close and broken)  [Hydra magnipapillata]
MGGSKRKQLSSRIYNNKKAKFRGNRYTKIPSSETKTLSFVESATHSASSKKLNIADRDFQDFQSTDFNFVMNFSLLENVI
SLLKCPNLCEDNVFLMFDSSKKYGLSIGLKICCNSCNWKTEFFSSATFCKKNFLEQQEPSKSKCSGQKPFDINTRVIVAF
REMGKGLSSLEKFCGIMNMKPPMNKKSYNKTLHNLLDVYQNLVDQNMKNAADELIPAGETSRDIMCSFDGSWQKRGFTSN
NGVVSAISVESGKCIDFQIETKTCKLCSIWKLKKYTHPVEYEKFQSSHFQKCKISHTGSSSAMESSGVLKLFHRSEKKNN
LRYTTYLGDGDSSSYTSVVAAKPYGHNVEIKKAECIGHIQKRVGTRLRNLKKSSKEILSDGKKLGGAGRLTENVINTLQN
YYGKAIRQNIGSLYAMKKSVAAVLFHCSESYDNETRHQFCLRTKDSWCKFQADKITGKKTYKENICIPAAVRDFIKPIFI
DLGSDVLLEKCLHGKTQNPNEALNQLIWKRCPKDIFVERTALCVGVASAVLYFNNGLQFLETLFDKLEITVGCNLHNFCL
INDSKRISKAEKQCTSIVKLRRKKLRAIQKGFCDQNETLEGAVYGSGEF
>Kolobok-1_BF_p2#DNA/Kolobok-T2 6025-5372 [Branchiostoma floridae]
MERLYREEFDPANIIAYNFQPRRQAPAPALGGSGEGDVGPLPVDPVAPPSEPECLGAHSTAYWDGEDVETEEWRLDDFLW
CRCTNCRPMTTVRECVCCHDLTEAETKGVGQWDGIHCLRDHPDFSAVVLNKAVLDAALNFRVDIKLEPLRDEYPPRTYRL
QAYRQCTAWLHQRLGRKIRRVLPSCAVWAIREAYPEPAGGNYRGFLDADDEIYDYIYE
>Kolobok-1_XT_tp#DNA/Kolobok-T2 1188-3629 [Xenopus (silurana) tropicalis]
MHKQSLDKSFMXAMSYNICVTYFCFSRLIFLKMPNCIVRGCPHKTAQKDKYPNVSLHYFPNDLNAITNWLRQTAQYGDNL
ESVANEIHQSAKTGRHRICSVHFTEDSFVAKGPKRMLKPNAVPTIFDIQPTPVLVTAMESTSFQSHKRRRVEDDIPSTSH
TIVRIVKHFITVATQTEEKIYVDASTTSMDMQLGIHKASGSDNPHSQLDIGVQTGDDSVAAEPWRIQKDHGYPVAFSTPI
KCMLDIDKPNPNLPGKDMQTVQESNLEGEEELFELTDSQLSSIQAMEPSIEEEKDTSIYEPEESVTFTEDDSTFTEKKEE
ILQRSFIVFEELLDQLFYLIKCQHSANSPCHAPIVEIEKKLNGTMVEVKLTCLSGHCSLIWNSQPIAGQISIGNVSVACA
ILLSGSSFTKVKEMFQLMSIPFFSHTTYYTYQKRYIFPAIDLAWIKEQELLKQDIADKAVVLAGDGQFDSPGHSAKYCTY
TMMDIMTKKIVDFTIEQVCPGKTSGQMETIAFEKCLSSLEKKGIDIRVMATDRHSSIRKFMKTKSETINHQFDVWHICKS
LVKKLTAASKQRKCKDIAHWIGPITNHLWWCSQTCDQNVENLLDKWRSLLYHIANKHTFRNLKTYKKCQHKKITAEEMKD
KKWITPSHPAYSTLVAILTNKLLIKDISQIEKFCHTGDLENFHSKVLKYRPKRIAFKLDSMYARTMLAALSHNKNVNRPQ
ATVHCSKKSEFPVGEKRFKIVFPKHKKEWVAKPIFEEISDLHLFDIISDAGKILKGEIVHRWESHTKGLPKNIASKKRPE
KSVVVAQHFSRFGR
>Kolobok-1_CS_p2#DNA/Kolobok-T2 4216-3551 (reverse) via tfasty with Kolobok-1_BF_p2, 1 intron. [Ciona savignyi]
MDDSFQHSGMDERSFIVHNKTTQIQPYAFEPMRTSGSISEDASPIEENVYLETLPIDMTWCRCKNCILMDTPQECLCCMN
VHAFLHKITPDWTCITKNPHFLIICLDKEVLEVALLTMCLARANSLTQPIENRTYRLASYRQFTLWARGKLGRNMRFVIP
ACVIQKIREAFPETSGVYTGFAHSDLQVSAICRFTLMY
>Kolobok-2_Aplcal#DNA/Kolobok-Hydra 1426-3141 [Aplysia californica]
MSNFIFCNSEPAPVEDDEETETQTNSSRCEQKMSAFVDHSSSPDPEAERYYLVHSSFFLAMLDIIVCPFCFGSDLSLDAS
SDIGMACRFTVECNTCQKPVWSKCTSPKSTRRHDINVRAVVASKECGVPLSTMKTMFSIMNMPNVMHHKTFHEIGLEVRE
AAIGAAEEVMSASARVIKERHQSNVYATERSSPSGVQVVNVSYDGTWHKRGHSSHYGVGVAIDVDSGYVLDTYTVSNFCT
GCTRAPDPDSPQYLSWFERHKPLCNKNFDGSSNAMETRAAEVIFSRSIECRGLIYGTMLCDGDSKALTRVNDLGVYDIPV
QKEDCVNHIAKRIYNQLEQVKKDNKQKLNRKLTAAKIKKITNTYATNLRQNAPDIQKMKLGVMGGLFHMMSTDSAPNHRL
CPEGETSWCKHNRALAKGEQPPPHNPTLSPDIGTYVFPIFKRLTDPELLSRCVRMSTQNPNECFNSTIWRRCPKVLFAHL
PTIETAVALSVISFNMGPTGLYKVFERLGLTWGAVTNSHAIGVAETRIRHSKRKGKNISKWKRKHLQQNHLNEKDKREER
EGVTYSSGAFNC
>Zaphod4_Hma#DNA/hAT-Tip100 ref|XP_002156024.1| [Hydra magnipapillata]
MAERKKPSGAQYRKRKVEQQREQEKQKGSLLKFICRQDSTKEDSNGGQIPTDMEAEEISNVVDNDNVMMSETLSYSTVPV
SHADNGQLNNSLEEHVQQASEEKTDNIIPQDPALWPLLINHNTRAIIVERGPQQIKDISFPNDKNNRKFSVFHYLRKLPN
GEELCRSWLLYSVLKDSVFCFCCKLFSMKAIGISSLTHTGSSDWKNMAAILSSHEKSPEHLQNYQKWKELHQRLQRDSTI
DAEILRKMKNEEKYWQQILKRLIALVRVLGEQNLAFRGTNETLYSANNGNFLKFVQYLAIFDPLMNEHLRKISNKELHTH
YLGKDIQNELIQLLGNAIKKKIIQTANAMKYFSIVLDGTPDCSHVEQMTIIIRFVKVDSLKKEFSIKEHFLGFVPLKKTT
GAYMAETIIQQLEEMELPIDNLRGQGYDNGANMIGKNNGVQKKILNINPRALFVPCSAHTLNFVVNDAANCCLMATSFFD
IVQRVYVYFSSSTHQWVVFTSHQPTLTVKPLSETRWESKIDAIKPLRYELGKIYDALLEIADDTSLTGSSGSTAGSDAKA
LANSVAKFKFVVSIVVWYNILFEINITSKQLQAKDLDIHAAVQQLQHTQAYLVDCRSDIGFARMLVDAAEIAKDLEIPPT
FEAEPRLRRRKKQFAYEAEDEPVQDPKQNFKVNFFFAILDTAIRSVEERFEQMRTIESVFGFLYHIHGLQSKTLQEILEC
CMKLESVLQHGDNRDLVASDLCGELQSIARRLSEKTKSPQDVFRFILCQNLEDSLPNLCIALRILLTLPVSVASGERSFS
KLKLIKTYIRSSMCQDRLVGLATLSIEHELADKLDLKDLVIDFAQKKARKVQF
>Zaphod1_Ola_tp#DNA/hAT-Tip100 157278581 ref|NP_001098391.1| transposase [Oryzias latipes]
MEKKRSKPSGAQFRKKRKEEEEKRDKEKGALLRYFGSSTTAQDETSTSLPAISSATVTVSPPQDELPSTSSATHVVPQLL
PEQSFDSEAEDVVPSTSTQLETSEMPGDETPLTPTAEDQPLPTDPAKWPSPLTDRIRMELVRRGPSSIPPDFVFPRNDSD
GRSCHHHYFRKTLVSGEKIARTWLMYSKVKNSLFCFCCKLFSNKNINLTTSGTANWKHASTYLTAHEKSPEHLNCMKAWK
ELSGRIRSGKTIDKQEMALLEEERVRWRAVLTRLIAIVQSLAVRNLALRGHTETLFTSSNGNFLKEVELMARFDPIMKDH
LNRVLRGTASHNSYIGHHVQNELIDLLSSKILSAIVDDIKKAKYFSIILDCTLDISHTEQLSVIIRVVSLMEKPQIREHF
MGFLEAEESTGQHLASMILNRLEELGISFEDCRGQSYDNGANMKGKNKGVQARLLEKNPRALFLPCGAHTLNLVVCDAAK
RSVDAMSYFGVLQKLYTLFSASAQRWAILKSQVSITLKSWTETRWESKIKSIEPMRYQGAAVREALIEVRDKTKDPVIKA
EAQSLSEEVGSYRFNICTVVWHDILSTIKHVSKLMQSPNMHVDLAVSLLKKTEQSLQSYRANGFVNAQMAAKEMCKEMNV
EAILKQKRIRSTKCQFSYESHDEPFSDALKKLEVEFFNVVVDEALSAIAERFSTLEVVQNRFGVLTNFPSLGDEELTEQC
EALGNILHFEKNWDLDSRELVQEIKNLPNLPSTTPSLLELISFMSDKDLSEIYPNFWTALRIALTLPVTVAQAERSFSKL
KLIKSYLRSTMSQERLTNLAVVSINHSVGEQISYDDVIDEFASRKARKVRF
>Zaphod_tp#DNA/hAT-Tip100 1010-3742 [Eutheria]
MSTSRDRDRNRKYESGAQKRKKAEKKKEIENLQRGGLLKFLKTGNNESEQTSVEHDPHKIREQDITNSLFNEDLITDQNN
ENEQENYSHQIHNLNRSDEIPATSYSLLNEDLITDQNNENEKENYSYQIHNSEATNATLACPLEDEENYIHEIGKLDEKD
ETSGALLCLLDDDPGKWPSHPSDSVRMFLAKHNLIQINDYDFPLDEHGRKFSISFYTKILSNGERNCRNWLLYSKFKDKV
FCYYCYMFHNQSSRSALANEGICDWKHLGSRLKEHETSLAHKKAHMQLLELKKRLNKQQTIDSIQQRQVNADIEHWRDVL
KRIILCVQYLAKHNDAFRGTNSTIFTENNGKFLGLVEMISKFDARMAEHVRRIKNNETNDHYLGWRIQNEIINLMGNKVR
EEIIHNNLKSKYYSVQLDCTRDKSHVEQLTFIIRIVELPEEENKEVEINEYFIGFTPVVKSTGFDLSEELKKQLSILGID
LKDCRGQAYDNGANMVGKEKGVQARILAENPEAFFVPCTAHSLNLLLGDVASTVPIAMTFFGTIQRLYTIFSGSAQRWNI
LMKHISNLTLQPLSDTRWECRLNAVKAIRFNLDKIRDALEELSETTEDPQIKSESWSLAENEINFEFALSTVIWYELLLA
INNVSKSLQKXNRSKFGYFTFKRIKNIFXNFRENGFSKSKETACEICNKSDIPIKYKEIRTRKRKRLHDYEGEDSRTNNP
ETNFYRDYFLAIIDQGIVSIEERFEQIEQHTAIFGFLYNIPALKNLKEEELKKYCMDLDIALRDGENRDISDSDLYDEIK
IFCNIFCDNDNLSYATPLQCLNMICKIHGSFPNLSIALRILLTIPVATASAERSFSKLKLIKNYLRTTMTQERLSNLALL
SIEHKLCENLDYNNIISDFAEMKARKINFME
>Kolobok-1_MicRcc299#DNA/Kolobok-Hydra 732-3272 [Micromonas sp. RCC299]
MLPASGHGHGDHSAHPEQSIAQALNFEALDLTGTNPWVDDVDMETSQGDEGPFTLQEAVSKRRRGRPKGSSTKKRRRSQS
EPRMVGVRERTQTQLFSPSKNMKVSDEPHGKMVEKSPTELLPLDAPWVDIRGERVIIELHQLDQSLQQVPCGSCPLDGHL
RLARDITTGKLTDTQTGLAHEFFMECDKCMLGHPLATSSKIETSEGVAGRKPFVVNRAAVTAGELCGVRRERQTKMLMMM
GIKGIMKDKTWMVHADEVYLEVEYVHYNQIKENRRKVRAYMEKKGFTPDEHGRIAIVVSADGSWAIKGYTSNCGQASLIF
SCEDFDRLVVAQDFRQKTCSTCDWYGKNKPSWVVPPHVCRKNYTDTSKSMEQDILISLVDDVAIYEHKTVDGTMEEKPME
ERLVIEAVCADEDSSFWNRITQDGALKNQFAPRKLSDVNHLSNCLMRRLAGQKAKKMKNTSLLSNAVCQKFCTSFRWIVK
QNTGDHQRAKAQLENMICHYFDDHTNCGDFPKLNEDGTPKEQWCRAQVAAENEAEEGDDHAGPTNFPRNKYLDKIVTVKR
GKYEETIVDGATKKTLVGAEDYEINYFDDVKEVFKVFLTDQVIKAATSGYSSNVNESLHSVQVSMMNGKHTFKGQRGNYV
MCMQAATLKHSLGMDYVLNLLPRCGVPVTLEMTRHFNRATKKAEAKKLYYKKIETKLIRKKRRMLKRKQSFEDRRNKPED
YRKGMALDALQEKDDDSADDEADSETEEPDGTGDLVQCLRCHKREATEENPMLFCCNQMTCGQAIHEECAGGWSYVVPPP
KGDPNREESLKSWPCPECQYKSQMSEDPESELIAEPEELHAPPERHL
>IS5_tp#DNA/IS 24-1049 [Root]
YEIMFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHC
MQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDAT
IIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQG
APQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAM
LFTLANLFRADQMIRQWERSH
>HATm-9_HM#DNA/hAT-hATm 575-3041 via tfasty with hATx-9_SM, 1 frameshift and 3 stopcodons  [Hydra magnipapillata]
MAKRTRKNSQSCKLSVMIGFASEFLDSELPTLRDVIKYGLLLRRDENCKANAKLKDTCKKVFSKVKTQWLKANPEIPIVT
DKVGVNKIIKVWKKATDIINYRCKPEIISKFNSTLDKLFDIAKCKCDIVSCEEASCNSCNFKAHISCQCNRENKIPTIEL
QFMKFQREKFGTKSSMQMGASDFKETNRQEKNNKRKATGKKKPQINTYLFHSQENEIKETIDNIANTDDEDVVSDNSFEY
ISRQVSKKTLNMEEVALASIRYGVSNRATAAISTLALKAAKEAGFLKKKVFDSEIVTDHKKIERSKLKVMKQLKSENDNV
VKDGVQCILFDGRKDETKCSLMGEDGKFHHRLVQEDHYSVCAEPGGLYLYHFTNDKENRSECNTPAEHIAEHIYKWIIEH
GVESTLVAVGCDSTNLNTGKxLIINTGKYLIINVIHIFKHNYFLGWKGGIIHFLEKKLQTKLIWIVCALHTNELPLRHLM
SIIDGKTTSNNKFSGNIGKLVPIANDLIISTVIQDIDTEINLLDIDEDILKTLSSDQKYLYRITKAIENKIMPKNLKEIQ
VGPHNNARWLNLASRLCRIWCSEHGLNKNDVENLKQLVQFCVGVYSVLWFEIKVRNVYMxFDNRLFIFEKCIINVxVKHK
WTNGPYHIIKQLELVRKMNLNIQQAVLPYVCSSAWNAHSESILQALLCSKDKEERKFAVNKILSIRSSSSLGITAVRPRN
IPNINTNAETIIELIDWSNDIYEPLLTCKIGKEELIKFLEVPMEVPEFPVHGQSIERIVKEVTRASSIVYGQERRDGFIK
ATIAHRELLPVLESKQNLLKLF
>HATm-3_HM#DNA/hAT-hATm 817-3263 via tfasty with hATm-1_SM, 1 frameshift and 1 stopcodon  [Hydra magnipapillata]
MDVLQHIVYRRSLLPHNVKKSAILSCPPYKIQGYKRCEVDDCECILGLIKRPWLKAGFQVMSDKSIIKNLMKMDKKYSDL
SRNKCRGTARDKVNQGEFISFLKKLFWIGSTDLKNQIRKDKKRSDKDKHDDLTFLEDQEGPRYFSLGSEDRKFSKKVLCC
FYWVNLTFFIQICxFNIHYLLIHIHYVKTNFRFLKRVRKRTRLEDESPKIDATSELDLSFTDTSADSDSEFEPEVWHHRR
ADDCNITAKVPKNIFDGNVSIIATANDISPNVLQKVTGAILQDCGVDIAKCKASASTALRKMKKTAKDTAEIAKLDIKKA
VEKSRYPCIIHFDGKTLFEINQGKRLKNERLAVLVNIEGVSHLLGVPALPSSSGENMYIGIMKILEEYDLISKVCGVCFD
TTSSNTGSKKGSLTRIAREVDKYLLLLACRHHIIELRMVHFCEAVIKENSVGPENPLFVKFKHMFENPNFKYDENNLTSL
DWKTVEGTVLKEAARKTLDYCETYITKKCNMRNDRRELAELTMQYLSPSAHFKLKKTGAVHHARFLGKSLYYLKLQLLCK
QLTFVQENDNLREDLKLICEFIVCFYTRWYLQAHKAIQSPASDLDAIFQMKEYKKVCSNPEAVDAVLASLYKHTWYLDST
IIPLALLDKNISMDKKTAIADALLSFQMPDPDFFKHRSKDRIDEINIINNMKVPTLSLLVNEFSYLIFSMIGLDNQRVRD
WLSLPPQYWHTQSSFKNFENFAKMLIVVNDHSERAIGMMQQFVQRFENEDDKQNRLLTVDKVRSTFKVFGVGKSNNTKKK
LSESLMSLSKLKKRKL
>HATx-9_SM#DNA/hAT-hATm 423-2651 [Schmidtea mediterranea]
MMNTSNVATRSDTRNSVFGQPNKLPDAQLPTKEEVFKCFLWHRQAKTTTTREIVKVVVSDVLSIWEKASIPTIAYENVLQ
SAERLIEKGKELQKYSLARRKTKAFCEKENRFKELFDICSCKCVDKGFVDRAKCQCSVKISILEWNFWIDQKTQRKMIIG
SVDAEVSSQLQRRMERKEKVEKRRQEHTKKGYVNDVADSSETALDYAVPHKEPASSSSSNNDSDSLSEETIIQNRLKYPQ
LSEMMERTGISNRDACKIINACLKDMKLDTPDNLIEPSKLRRQRIYWRKKAIESRALVLSNLLCIGFDGRIDETRLVEDG
SRKRKKEDHYVIVSYPGEHYVDHVSPQSGKANDITTELLSVIHETNSTKTLCAILCDGTNVNTGEHKGVIRHIETVLQHP
VQWLICMLHLNELPFREVFKRIDGETCGPHSFQGNVGSKLNYDPRTLPLVDFEPIHGYVQDIDDDIKNDLSDDQQFLLRA
CLAIQQGKNETNQNDLKFLATASPGPLNHARWLTCANRVLRLYMSTQEPSTQLQKLTTFIVQVYASSWFQIKSHPLCFDG
SRNFFYIIQKSRYLTDSLMRDAVEKTLSRNSYFAHPENILLAALTDNNLCIRKDAANKIMLARQIMQGEAQIRKFSKTQI
FINFDATTYYDMIDWEKSAVTPPPILESLPSEELLQQVELGPISFPSIPCHTQAVERAVKEVTRASSKLYGHEARHGMIV
AAEESRRRLKNWKRKNILINNK
>HATx-1_SM#DNA/hAT-hATx 417-2507 [Schmidtea mediterranea]
MERVARGTYTKWQNHCKILKNDKFTVECNLCSDDAKDKLIKRTDYNTKQIHSHLWKFHQYRYVQPEKSKDSAATQSQRKT
IDTYFKEKLTLTDEIVAKLAADVGLSFNQIANPLMQKLIESYTKVEAPKNDEKVRQTVYRAAAFVKNNIKNDIQLMKSQG
AKFSYVSDEATFKQIKVMNVHLFGPNGYNQNLGMIEMGKECDAKTLLRLQNQQLVIFKVDPDKDCIGQTMDGAPVCIKCG
RLSNRLHHICYDHGIHNCVKRVTTRKKPKKISADLNCDDNSSSSMSDETSDGDCDDNEVSDVEIVGSSKGSGSVASSNGM
IRTVDGSHSSDESDSESDDGCDVAISDEEIVAEEYEYDPALSITKTLKDVREAIRKFKYNLNLVKVLKENATFLGIDFKL
LAVDVKTRWNSSLKMLTVFNDMMPAVKKTLKDYGHNWHEYLESSVPELISTLQPCKLAMDAISGDESDLNMAEGALEFLL
KEMRLQQKCFLRDRLVEELETEIEKRRPKLTVSLLKFLNNPGVLNEDQEYPFTLSKKEEIFKEGIRLWRKHYFINDSDGG
DDDDVEVEKVSIVSTETQQQKNDDVDDPKSRLLASLKRRTTSNFVPKLPKRKKPSPKAIDPNDLTVEDFNKYISTGIKSE
KLSKLEEALKLIRGTSIRSEQNFSIAGNHRSKRRERMTSVTMSDLSVLKSYFQKKR
>HAT-23_SM#DNA/hAT-hATx 945-3121 via tfasty with hATx-10_SM, 2 frameshifts. [Schmidtea mediterranea]
MNHNKIITLKIKPNLLLFLVLNLIIKILNSNYIFIVNYYSLSMSAARKKDLWNNFTRMKDGNSAVCKRCNTTIKCAGGST
SGLHNHLIRKHSINLLKRETLNIEAVESCNSKISSNISVSDDTNSRTKISNYFIQIKTIDNSFPAVLARLTARDCLSFKK
ICTSYDLQELFKSKGCDIPKSPMTIKRIVMDYGDKIRQQTVIELSERISRGELFSLTLDEWTSLKNRRFMNVNVHSYDDI
YWNLGLVRIEGAMAADKCITYLQNKLQEFNIPTENVISITTDGAAIMKKVGRLIDVSHHQLCFAHGIQLAVIKVLYQKSF
SDNISDENMADAATEYEHETVTISKEEKGDEEEIEHFEVHTDTLPTDMPISIKHECIGPIISKIRKVVGIFRRSTVKNDA
LQKHVMVEFDKELSLILDTKIRWSSLLDMLERFYQIKNCVRKTLIDIKSDLELSEKELNLVSNIISALQPIKVAVETLCS
RDTNLYIADLTLKFMLDELGNQNTFISNELKEALILRISERRTMYSDIFYYLHEPRSCGENSYGMFNTINKIVISKKIVE
IIQTFSNKRFRNYDTESEIVCEEPELTIGSAIPSTSAGTSSGLSMKEKLNLVIQNRININADEEISDPKTPSGLLNIIRK
EMLYFKEQNIKGKYLQKALKYISTVRPTSVESERALSAAGLICTRSRSSMNDETLSTMCFLRAFFERAIYAKLAVKIAIE
TKLSK
>HATm-2_AA#DNA/hAT-hATm 500-5020 GENSCAN_predicted_peptide_1|687_aa (3 introns) [Aedes aegypti]
MASSAVKQCLRSKVQVPLIGPVLINFSKNRIPTKREALQVLFFYNYVKHLNVSMSISEAADQIMKLEIEGLAIKRKDIIQ
ACLQRLYNDWRDTQRSKSKMSLNAEEKRQLFVNKLSDKLPCTVPCSESPLKVNETLESDKENTEKKAERNFTDRGKEKRP
VAYKINLTTPKVAAAFERTGISNRNASMILEALIEDNHTKSSSSTEYSINYQTIRRSRMQHRQELAEKLKQSFDPSVPLV
LHWDGKMLPDQNGKRVDRLPIVVTGSGVSKLLSVPTVSSGTASAETAAIMEVISEWGLQERLVGMSFDTTSVNTGVNNGI
ISRLPALLNKNMLALACRHHVAEIVLKHVFEIFGDKSKSSNLDCFNEFKKEFNENRGDQKLKTVLDDIRLKTLTEPWRDS
VVEFCKDQLANQQQRGDYEELLELVIMFLGEVPPKGIRLRKAGCLSRARWMGRSIYLLKLWIWTDNREDQKLWDHYTTVA
LFIAQCFVRYWFRVNCSISAPRVDLEFSNEIHRFHDEKYRSAALKAFKNHLWYLSEWNAAMAFFDPAIDSLEKQKMVVAL
NSSATPLGSHAKRRKTDKVQNKIPMRATQIDENMTVSSYITEASKTFFDIMRIKTSFLHIDPAEWEKDEAFLLGRDRVMA
LEVVNDVAERAVKLATDYNNKITKDPKQHNDLLQVVEYHRKLKPLKY
>hAT-4B_AP_tp#DNA/hAT-hATm 624-2953 via genewise with HAT-7_SM, 1 intron (2569:2642) [Acyrthosiphon pisum]
MSRKLRADEQIFLIGSPSTQILGSKLPSIGQVLSVFFYNVRTVKLNTRESASLAVRECNIFWEKARIPVRAVQHCIDKLL
NVYEEWRALQKNSQKVGDSFKLKETEFINKLNNLFDIAHANALNIMKIENDKQFLINQRLPGRIGCLGGIDKKLLESENK
AKKRKCIEIEKLTNRQLQLSNYNATEIQNQLSDMSISSPSSSSDSEYTNCTRIPMTLSEKKRGRTNFITPKLVAALDRCK
LSVRDSVYVIQATAEALGNNVDSLVINKSSIHRCRDAVRVERANKIKTNFQMSVPSYITVHWDGKILPTLNVRESGIDRL
PIVLTSNNLDLLIGIPKLEKSTGKEQANAIYYALENWGVTDVVQALCCDTTASNTGRLNGACVLLEQKLERDLLYLPCRH
HIYEIILRGVFESVLPHTTTSPDIPLFKKFRNNWNKIDITNITSGIDDLECCTALEDVRNDILHFCRAMLQNKCYRDDYK
ELLELSITFLNGDLDNKFKIRPPGAMHQARWMSRAIYCLKIYIFRNQYSLSSSEKNSIRDICVFIVRFYLKAWFSCTTAA
RAPANDLNFIKCLKQYENEHSKISKAAITKISNHLWYLTEETAALAFFDDTLSNEIKRLMVQSLNNDGLIHPTKRLIVSF
QDLGETFSEKTLASFISKNSMQFFSRFNINTDFLNDDPSTWDTQISYLHGKEIACSLNVVNDTAERAVKLMEDFHGNLTK
DDKKSELLLQCIQEHRRLYPDCKKETLKKNFN
>Myotis_hAT1#DNA/hAT-Charlie 700-2631  [Myotis lucifugus]
MENQKNKKARLNDKGSGSSSSRPFQDIWTEMYGIVDRNNRSLCILCNETVVSRTWNVKRHFETNHCQLLKKSIDERKEYI
SRQLHLYKSQSNSIIKFVRCSTNLTSASYCIAHSIAQHGKALSDGEFIKETFLRCAPALFHDMKNKDDIIKRISELPLSR
NTIKDRIIDLNKNVQHQLKKDLNSCKYFSISLDETTDVTSNARLAIIARYSDGLTMREELIKLESVPISTSGNEICKVVI
KTFSDLNIDISKIVSVTTDGAPNMVGKNVGFLKLFMEAIRHPLVPFHCIIHQEVLCAKSGFSELNDLMSVVTKIVNFIAS
RPLHKREFSALLQEVDSTYSGLLMFNNVRWLSRGKVLERFVECFEEITVFIENKDLANFPQINDHKWVSNLMFFTDLSVH
MNELNLKLQGFGKSIDVMFGYIKSFESKLKIFKRDIETKTYKYFPRIKKYFEKATTTSVMESILMYQNIVNSLFEQFSER
FDQFRSLEQTIKIIKYPDVVVYSTLELKDFQWMQIDDLEMQLADFQGSIWTHVFVDLRSKLENLERNRLNNEEECNYEQE
ILSAWNRVPDTFSDIKNLAMALLTIFSSTYFCETLFSALNNIKTNKRNRLTDEVSGACLALKCTKYEPAIEELADKLQHQ
KSH
>hAT-5_AP_tp#DNA/hAT-hATm 492-2599 via tfasty with HATm-1_CS, 1 frameshift and 1 stopcodon. [Acyrthosiphon pisum]
MSRQYIFLLGNISNQITGNKLPSNGDCLWVLFYNMRVVNLNLNDSSGLVADECLLFWKKARIPTQYHCDIVRKIKNLYES
WRSLDKNKTRKSATQQCKENNFKNSLNNLFDIAHKDAFNIIKIDEDRQFLTLQRQEGRVGYMAGVDKKLCAVEERKCERE
QEERIVQANIHDATWxINFYIKKINNLSDYNNINLHNIQYKIDYIYYFICNIIFFLGPSHTVDFEESISSDDERDVLKSK
DSEMCESIIMPIKNKRGRKEIMTSRLASALDKCKVSDRDAVHLLIACAEVFNVNVNDYAINRSSVKRSRESFRYQISSEI
KTEFHQLNLNFAVVHWDSKILPNLIGTENVDRLPVIITAPNVEQLLGVPHLSSGTGKEISSAVYDTLKDWSMLEKVQAFV
FDTTASNSGRLNGSCVLLEQMLNRPILFLACRHHIFEIILQSVFSYSKLTTMSGPEIPIFKRFKNNWNQIDQTKYNTWVS
DNEVKKILHKVADDVIIFCKDTLNQNLPRDDYKEFLELVIIFLGGVPPKSIHFKRPGAYHLARWMCKGIYCLKIYIFQEQ
FKLTKAEITSLKTICCFIVKCYIEFWFRSPNAIEAPYNDVLFLRKLEDYKSDDKKVAELAIKKFINHLWYLGEETACFSL
FDDRIENHVKKQMAQQLLENDDLQEDELTTEIQKKYVLKNGDVSQFLKQDLPLELIHNNTIHK
>HATm-1_CS#DNA/hAT-hATm 439-2698 via tfasty with hATm-3_HR, 1 frameshift. [Ciona savignyi]
MATSVQTRSKTFIWLIGSPSSEVLEKRLPTKLEVFKTFFYHHIEEHKTVHQSAIETVNKVFHVWSNARIPTTQKHNAVKR
LENLIQKYQKLKKNRNRVSDTQQDKEVEFLTNLEELWDIAHQNAMDKIKIEEDRQFLLCQRQGTGYMMGIDKKLKKKEER
ILKRKKEERDRYERHCKETFLDKPSTSTEIDSSTSSLNETSSSASSNDYSYSTSPIKVHSTTHTNKKQKIITPNLSSALD
RVKMSDRNAMYTVVAAASSMGHDIGKLALSRSTIRRTRISQRETIANEIKTSFDPQTKLVVHWDGKLLCDITGNKERVER
LPIIVSGQGIEKILSVPKLSQGSGRAMANATINTLQQWDVVSLVRGMCFDTTASNTGAYSGACSLIEKKLERKLLHLPCR
HHIHELILANVFKGLFGCSSGPEVLLFKRFQAYWKYIDQAKFEPYTEDSDSGEDIVQWKTEAIVNAFKIVKETQPRDDYR
EVLELSLIFLGETPPRGTRFQAPGAFHHARWMAKMIYCIKMYLFRNQFKLTKNEVKAITEFAKFSVLVYVKAWFSSPLPI
LAPINDLNLLKTLNRYEAINTSVSALSLKVLKRHLWYLSEEIVLLSLFSDENIIPQAEKLKMVDSLKKKAKVRKKRYRPT
NIKDIASACLSDFVTEDSLSLFEILDLDQTFLEHHPSTWNEQQHSYKTAKDCVMSLRVVNDCAERGVALIWEYNSFLTKD
EEQKQYLLQVVEQHRKNYPTPNKSNYINNELG
>HAT-78_HM#DNA/hAT-hATm 680-3192 via tfasty with hAT-9_SM, 1 frameshift. [Hydra magnipapillata]
MKQLKLKLSQQHLSSPNLTIIRHHLVVPSRRNTTPVSDSKKKPQTRRATELFGIGAAICADDALITGIRLPTCLQVLRCM
MYHSKEATHGKRPGSLGATSRFTSAKIVLKQVKALYEKANIPMVTERRACEKIVKLLDDNNKLRSIDKSRRETPATQHKL
LEMQSMLATTFQLWPANVDSLMNNDEDLAFLQSMKTDRAASFGVFDKALAQKINRRHCRDVAALGRLKRARGEIEASTKT
VSPEVVTDSECSDESSESASEDDMESEFRSPSKEMELQKPNRIKPKGTLSFIPPDLLSRPNLVSLATRLKMTPTQQSAFT
QGVIAESGGDVSMVASSYATADRARRKVVREISIEIHNSWEPPKLCTLHWDGKLTPTLTNNRVTEERMTVVVGDASQLKL
LGVPSYFKGTDQSVGEIIAKLTMNLMIEWHCNDRIVNMTFDTTSSNTGHLTAACIAIQDKLERAVLWSGCRHHVGEVLLS
HVFTDLKIEASKSPEVTVFTRLRSNWNLVPHDSSQILPFCPTDHDAEAQQLLSKMKDEVIARAIEDVDCLRDDYREFTEL
TLVYLSSSKVEVKFRRPGALHKARWMAKLINGLKIALLENTNIAELPAGTITTRHQVPKIRAFATFITHVYGVWWLTCRN
TVDSPYNDLQLYKRLLEYETVDKVISQSAIRALNRHLWYLTEEMVPLALFSKLVPSTERRALADALLKLKPSSDLQAPMN
RFGNGWGKPHFPLSIDRRTQLSDLVGVDSWFTVYRLQLDTSFLELSVDEWEKTPAYIASVENCAAVNVVNDCAERGVKLA
SDFVETARSDEHYQNVLQVVEKDRKETPNLRRKRCKKE
>hATx-24_SM_tp#DNA/hAT-hATx 240-2258  [Schmidtea mediterranea]
MYSSNVQSTDKSKTSSELHNIWHFFQHDKLNQSAKCNKCMKVLKCYGKSTSSLHSHLKTAHNTNALKRTTSDTKCMEVES
SVCSSLRETVQITNFFRSQTDDSLAAIVSRMTAKDGIPLSMFCTSSDLRKLLIAKGFQKIPKSPNSIRQMIFGYSKKIRD
EVVNEISCYKQKGGRLSLSFDEWTSTRNRRYLNINAHSNSGGRFWNLGLARVVGSLPAGRCVDLLLQKLSIFNISMEKDV
VCITTDGAAVMKKVGKLVNASQQLCFAHGIQLAVLSVLYRNDTSTEVELLADLPENEEHSSDEDSADADLADAGLGAGNQ
NYNFDVGIENDHNIVSILHHRLMPLIAKVRKVIRLFRLSPTKNDDILQKYVKTEFGKELMLILDSKTRWNSLLTMLERFL
KLKSAIQKALIDIKSSYQFSADEFNLLSETVATLTPIKYALEAICRQDANLLTADATLKFLICTLGKINCVLANDMKNAL
EFRIKERRTDLSGLLQYLHSGYANSSSSSTDLFPALKKITIKRLLLNMVQRLFISESDNENDELRQQHSDENVSMEVSIV
EETENDADTIKQQMQRAIDQHLAVPDKRNTFSSTSSIIEKTLKRELAQFEDDGNRSKWLDLCYNTLKSIPPTSVESERAF
SVSGNFCTKLRSRLSDETIDNLCFLRAHFNKI
>hAT-10_SBi_tp#DNA/hAT-Tag1 808-3265 via genewise with 34914880_Osa, 2 introns (2579:2674, 2794:2875) [Sorghum bicolor]
STASTGIESNEPTDPAWKYCTMPDVNKKGSLQCTFCSGIYHGGITRIKYHLGKVPKSNVAKCKKVPSDVQQEILEVLAIK
SDNKQKKAEEKEEDRAVVDLSHSEGEEHSDAEGNSVIVVKKMSSKGHSGPIDKFCRLTTEEIVAARKGKGVLSEKVQSKI
STEKREEKRDRACEYICNFFYDASIPHNVTTLPSFELMLEAIGDFGRGLRGPTPYEMSGKFLQKRKRKVQELVKAHKESW
ELHGCSVMTDAWTDKRGRGVMNLVVHSAYGVYFLDSVDCSAVKKDGRYIFELVDKCIEEIGVQNVVQVVTDNARPNEAAA
SLLRAKHPSIFWNGCAAHTIDLMLEDIGKMPRVAATISKAKCLTVFLYAHTRVLDLMRKYLSRDLVRCGVTRFATAYLNL
KSMLENKKQLQRLFREDELHELGYLKSAKGKKAEKVAKSETFWRDVETAVIYFEPLAHVLRRMDSDVPAMGFLYGYLQEA
KNEISKRFNNDRRKFEEVFQFIDKRWDSKLKTPLHRAGYYLNPFYYYQNKVAIEDNETFRDGVITCITKLVPDIETQDKI
IEELQKFQDAEGSFGKEIAKRQCKNIHFNPAKWWLNHGSSAPTLRKLAARILSLTCSSSACERCWSSFEQVHTKRRNRLL
HDRMRDLVFVKFNSKLRQKKDNKDRDPLEKPVSDVLEDEDNEWITGVEQTEMEEDEEGGIGGTSQEVVAAPPPRKRGNQS
RKRKRLIPTGDDELSASSSDGENDTMMHSDSISVSDEEMQ
>hAT-3_STu_tp#DNA/hAT-Tag1 2153-4454 via genewise with hAT-9_SBi_tp, 1 introns (4185:4293) [Solanum tuberosum]
MASSSQKGKHFMRPTKSVGVDFDDKPLWNHVKVISIAPNGGGNRTWSCNYCNKIVTGSYNRVKAHLLRLSGHGVQICKES
SGDIYATLKMEHEQAERKRTVVQVDARNKADYISLPEGTDLIQQKKRKSSSSGAIGKSFGIYERNTADKLAARMFYASGL
SFNFANSPYFKKYSKFLAENSIPGYIPPSYNRLRTTLLAQEKTHIDRKLQPIKGTWKKKGLSICSDGWSDTKRRPLINIM
ASSSGGPMFLNSINSSGIVKDGEYIANLFIEAIENVGSNNVVQVITDNASNMKLAGTIVEQKYPHIFWTPCVVHCLNLAL
KSMCQPSEKSPHFTNCKWILELLSEVSNLKNFVVNHDLAHALFQKYSDLCLLKVGETRFASHIIMTTRIRKVKSSLEKMV
MDDEWKNYKGDKGIEAKTREIKSLIMNDEKWDSIDYFLKFTEPIVDMLRSADIDGPKLHLIYDMWDSMIEKVKKVIFEHE
GKDLISGQSNFFDTIHDILVARWNKSNTPLHCMAHSLVPKYYHESWLQGENGIRKLAPNEDSEISLNRVKCFQRYFKDSN
EMKQVSLEYGSFCSGSGYFSEPHVIEAMMYEDSLSWWANHGVSAPLLQQLAYKLLTQPASSSCCERNWSTYSLIHNIKRN
KLATSRAEDLVFVHYNLRLLSRKKEKYINGPSKYWDVGGDRFDIDETTNDLTELSIDEPQIEGVIFEEEFEDLEEVEEDV
EDVEEIANLIK
>11994527_Ath#DNA/hAT-Tip100 gi|11994527|dbj|BAB02591.1| unnamed protein product  (partially identical to 15228706, which is a badly constructed gene) Removed Copia fragment from C terminus. [Arabidopsis thaliana]
MSNGTIHRFFKRKHESTSQDIPENIPEAIPEDLPSDPGDRKHILDYHPNERDEVRRKYLIKGPYQSRGHDFPKTLSEKKM
RRFNPEWFDLYSDYTENKGGSDTFVTKGFDTWKNPQSLREHVGLVNSFHNNALKRADCLMRQGLPFRGHDESVDSANREN
FLELVKYTAGQNEAVSKIVLENAPKNNQMACPKIQKDIVHCFAEEIFLIKNKWQWFFCFVDKHGTVKERFIGLIHVKKTF
FASLKCAIDSLFAKLGLSIKQLRGQGYDGASNMKGEFNGLRSLILRENSSAYYIHCFAHQLQLVVVAVAKKHFEIGDFFD
MISVLINVVGASCKRKDRVRDEFRKKLEERINQGEIKTGKGLNQKLSLQRPGNTRWGTHYTTLLRLVDLFSVIIKVLEWI
EDDGTDSTKRRQANGLLKYFNTFDFVFYLQLMLLILGLTNSLSVALQRKDQDILNAMSLVKSTKQQLFKLRDDGWDSFLN
EVFSFCKDHDIEFVIMDGEFVDPRKPRKKSNMTNLHHYQVECFNTVLDMQIQEFN
>116308850_Osa_tp#DNA/hAT-Tip100 gi|116308850|emb|CAH65987.1| H1005F08.16 [Oryza sativa (indica cultivar-group)]
MKKKKTIDLKSLWERSAKSQKIASTTVPIPLTIESEVQISQNVPSNPIQLLLEAPSAHDSDTSPSVQVEKEETNPSTQPD
RAASPATGPRTESSPLSPISDDGDDDDDGIYDVDLLPRDPAHRTPISSYDVNKQDAVRRGFVALGPFQPDHEFPQRDIGG
KRRFNARWFNEYKWLEYSVELDAAFCFVCYLFKDQTSLSSHGGDAFVNEGFRNWNMKWRFDRHVGSINSGHNQAQEKYEL
FISGKQSIRESCASNTEIYKEQYKSRLTYSLKCLRFLLRQGLACRGHDESDDSHNRGNFLELLNWLAQNFEEVNKVVLIN
APKNCKMTCPTIQKEIINCCAKATTSLIMQELGDGCFAILADESSDVYQQEQLALCLRYVDKKGRVVERFLGIVQVENTS
SLTLKTPIESLLASQSLSFSRVRGQGYDGASNMKGHVNGLKKLIMDECPSAYYVHCFAHQLQLTLVAVAKENSDCVWFFE
QLRYLLTVIGNSCKKTHMLRVAQARRIVEALDVGDIETGTGLNQEMGLSRPGDTRWGSHYKTVMHVISLYPSIRQVLFKV
GKDKSQNAEAIQAQTMLESFESFEFIFMAHLLLTIFGYSDDLSNALQKRDQDIVNAIELIYDTKMQLQLLREDDGWESFL
KDVTSFCAKHSIKVVDMDGFYKPVGRSKRFFKKVKNFSRFHVDMFISIIDRQLQELNDRFDEVNTELLLCMASFNPIDSF
SAYDKENLVKLAQFYPKDFTETELLHLPFQLTLFINFVRRDERFKNVKNLVELSTMLVATKKHTAYELVYKLLKLVLILP
VATASVERVFSSMNYVKNKLRNRMGEQYLNDCLVTFLERDLFVQVTNDDIISRFQAMATRKVKL
>47210177_Tni_eg#DNA/hAT-Tip100 EXAPTED GENE; first 100 AA (containing a THAP DNA-binding domain) may be a from a fused protein. gi|47210177|emb|CAF90593.1| unnamed protein product [Tetraodon nigroviridis]
MPNFCAAPNCTRKSTQSDLAFFRFPRDPERCRIWVENCRRADLEGKTSDQLNKHYRLCAKHFDPAMVCKTSPYRTVLKDT
AIPTIFDLTSHLKNPHARHRKRIKELTEEDIRKIKERRLASSIEQLNSKKDPAAAEDAGTNEEEPQWSSEEKAFREYLKS
LFEILVMFVNQGIPLVANTLSDPQIASSNFQALINHRMNAGDEALRKRFDTVAVNREYVSATQLSQLLDIFENTVREEML
MEVRESRFFSVLTGDLVEFAREKYLPLFLRFVNQHNVLREEFLDFLSFDGDEFALVDRLEALLTERWGLSMEDCRGQAHK
ATGTSTTKMKAVAVLLMEKYPLALHMPCSHIALNIHLANNLPLPNVQVVMATLRRIGAFFSAPLTQDELENAVSTHYHKN
EEKAAALRLACRPGWVEQHNVFDLLLDLLPPLVLCMDIIRDNEGGNFTDAVTAEAYSIAEILVDFEVLVTVVILKNVLTF
TRAFGRNLQGETLDVFLAANSITAVLHSLTEVNDNIDVYHEFWYEEAVGIANVMEIPVRVPRLFVRKQRAMEEGEVQAEL
YFKEYVTVPVIHGVIQEVEDMFSENNLKALKCLSLVPAIMGQMKFNTSEENYADVYCSDLPNADTLPAELHCWRIKWKHR
SKDVRLPTTIHETLQLPDVKFFPNVNAFLKVLSTLPVLKLESSRSHSASGRLLAYLDGMPGAQRNKSLVMLNINTHIKHD
LDVMVDKYCRLY
>hAT-1_AMi_tp#DNA/hAT-Tag1 1016-2940 via tfasty with hAT-11_SBi_tp, 1 frameshift. [Crocodylidae]
MVRPTSSIWKHFHTASYSEKNNVICKYCQMKYAFPNATRMTKHILVCKKCPADIKKSFMGVSEEEVDHDDESASSSFQRS
RSRSPPTAAAAASITSASQRVAQSTSSSNQILQPTVYKRLSIASFVDKMTPEDQEKIDQALARAIYSSGTPLSITENAYW
QEAFKLLRPSYRLPSRHSLSKPLLESEYERVMQSVQGKINEALCLAVLTDGWTNVRGEGIINFVITTPQPVFYRSIETGE
NRHTAEYISSKICEVLQKIGSGKVFALLTDNASNMKAAWEIIMDKYPHITAIGCASHGLNLLLNDIMKLDTLQKIYRRAK
EVIKHVKATHIVAAVFKKKQEEKNAKNKIVTLKLCSKTRWGGVVISFESLLKNKEALQETVIIEDLKVPRSVRNTVLDED
VFWVQLQNSLKILKPISSAITASESDSALLSDIPYQMAQIKSTVFENLSVSPLTSTEERKVKDFINRREEFCCQSIHAAA
NLLDPRFKGRNVSDDSTATAFDWITKQATHLGLDVGKVLSNVAEYRTSSGIWSRNAVWDSAKHIPPATWWQGLCTTQPLT
PLASRLLQIPPSSAACERNWSMFGNTRTKSRNKLTCERVEKLVSIRANLQFSEVHEDDKNEGSEESEEAETADSDSSENE
TD
>hAT-2_DT#DNA/hAT-hobo 421-2224 via tfasty with Hermes_tp, SW:760, 1 frameshift. [Drosophila takahashii]
MKVLSGTFTISQKRGRSEVWEIFGNVLNEKGEEITNVVACKKCSHAVKYSNSTSNLARHKCFKALEPKCEDEPEVKIDNE
TKSKIVKLAAEWTVENCRPFELLADSGLLKMADALIRLGSKLGQNLKATSVLPHPTTVSRQISKLYAVHQNRVKTEICEN
RKQGIGYSVTTDGWTDNIYKSAYVSVTIHYVIKGSIMSRLLSVEATKGEPSTGINLYFTSAIFSVFNLPTYLAGVNLKKT
VARCLLEFECHLDQDNVIVVTDRGANMISAYKNNKHIYCINHMLNNVVEKSFDDPDMNKMLGQASKLVKYFKKSGENSNL
KSSLKSLCPTRWNTAFYMLRSIQDEWAAISGILIRKKEESRLGDLNLKNLKEVTEILEHFEKTSKFLESENYPTLHMVIP
EIHSLKKKCKIDSNDSDLACSLKILLFNYIDSIVIPNITEYHKIALFLFPPGNELLQFTDTEKFKTIEDCKQLMKNFLDA
HDENGNQQTVSKTNDRFADFVRNFANDTADDKVDREMTAYLTTITLYTEDFDPLKWWETNKNQFPLLFKASCQVLGTPAS
SASSERSFSLAGNLISEKRNAIATNPEMIKEIMFLNCNTNK
>hAT1_DYa_tp#DNA/hAT-hobo 447-2123 via tfasty with Hermit_tp, 1 intron (1099:1163), 1 frameshift and 4 stopcodons. [Drosophila yakuba]
IEESATVIKQKLENGVYSLKGKRGRSKVWDYFLQVNDEDGKQIKDFVACKICKSVYKFSGNTSNLVKHKCYIISCRNNHV
LTNVNSETKKEATAIATKWIVRNCRPFKMIGDTGLKEFATFLIGVGATYGANVDVDNLLPHSTTISRNVASLYEERFGPV
KAEIGKFKRFGYAVTSDVWTDNHLRLSYLSCTIHYIKEGILVNRLLAVKCMKGESCTGNLNLTINxMTKxLMLVIxLFLG
VNIRTKLMDILQNFGCNLDEDQPVIVTDRGSNMIAAFQKYDHIHCVNHLLHNIVEATVKQITEFSKLQxIVKFFKKSGSN
FFLNETLKSLCPTRWNTVFFLLKSIEGNWIEISNTLKEKNQTARIESIHINELTGITRVLETFTDLSKKFESSQFLLFIS
QSHILTNxKKPVNHNCPNKxHKQFFPISLFLFPPTNKLLQFAEEEKNVIQNCKALLARNVPIDSKYVVTTVHIDQEINMY
INTNTTYFDGFNCLAERAxKMFPNLYKASCKIFCIPATSAASERAFSDARNLITDKRSAISLNSENINKIMFLHNNIEN
>hAT-7_DBp#DNA/hAT-hobo 409-2223 via tfasty with Hermes_tp, 2 frameshifts. [Drosophila bipectinata]
MEGIIEKIRANEYQLAARHKGRSNIWNILTEIVKEDGVVLDGFLYCRSCHDLVKYSPKQTSNLSRHKCCKLLKESKLLTT
AKPEDKKDAIDACVEWVTQDCRPFSSINGNGFRNMAKFLVNIGGRYKEGVDLDDLLPDATTVSRATQKLADEKKNMIKDE
IRSEVANSGGATATVDLWTDSYVHRNFLGVTLHYQKDLKLVDLILGVKSMDFERSTSTNVLNKLNTLFAEFGIYNLDQMK
FVTDRGTNIVKALQNNIRLNCSSHLLANVLENSFKESKEVAELVEMCKKIVKYFKKANLQHHLQTSVKNQCPTRWNSNFT
MFKSIVDNWFNINEILIEKQESQRLLLINISTLKQLVDLCSDFEIIFKKLQFCSSPSLCFVIPSIEKMRHICAPQEEDVP
ALVTLKEKICNNVNEIWIPNICVWHKAACFLFPPALQMQPNDQDAIQKFCISQIKNLDVPSTSSAQISPSTPNGDFSEFS
FESSTFSTSTQADKDQNVFFFPNLIKKSTLNSLKTPEDELESYCKEMVDIGDDFDVLKWWKDKDQTYHRLSKFALKVHSM
PASSAAAERGFSLAGNVITEKRNRLCPKSVDSIIFLNSYYKAFDH
>Hopers2_tp#DNA/hAT-hobo 842-2381 via genewise with Hoyak1_tp#DNA/hAT-hobo, 1 intron (1467:1563) [Drosophila persimilis]
MAGQYKISQKRGKSKVWEVFGPVVGEDSNVIPNIVACRNCFTIFKFTGATSNLVRHKCYKVTKSEENGNVYEPVVDAETK
LSVTKVVTKWVVQNCRPFNIISDSGLKDVITVALDIGSRFGPNINVSNLLPHPTTVSRNVTDLYNKELRAVTEEIALMKG
NGYTITSDAWTDTFSQKSYLCVTLHYIFKGSMKNRLLEMICINGESATGTLIRTKVEQCLNSFGLDLNDAIIVTDRGSNM
ISAFKESAHIHCINHLLNNVVEKAFKAVPELLQIEKKCAKLAKYFKRSGQNLKLELSLKGVCQTRWNTIFYTMKSIEHNW
HDVVQILNEQNEMNRLDGLNYSDITAITNVLSKIEEISKFLEADEYPTMHWVIPRIHALQKFIKDANSDKDIEQKFSWSL
SMHIDSVLLKYITKYHRIALFLFPPTNQLRQVDRTLTIEECKEMMRSFLTDDKENLDLSATCSNKFEEFLADFIEPLSGV
K
>Hector_tp#DNA/hAT-hobo 1-638 [Musca vetustissima]
QWVVEDCRPFSAVNGSGFEKLVQHFINLGAKYGENIDIKDLLPSQRTISRNIQKTAEETKNGIKNEIAEVVRGGGASATI
DMWTDNYVKRNFLGVTLHYQSKSKFVDMVLGMKSMDFQRLKSLFNEFGVQDLGPIKFVTDRGSNILKALEQNTRLNCSSH
LFSNVLEKSFEDTAELKELLKACAKLVKYFKKANLQHKLPTSLKSPCPTRWN
>P-4_AP_tp#DNA/P 577-3462 via genewise with P-13_HM, 2 introns (648:713, 1449:1517) and 2 frameshifts [Acyrthosiphon pisum]
MVYYCCAWGCSNKRVPNSGIHFFAFPLKNKERTENWLKNINRKGFIPSEYSRLCSKHFLPSDFKPYNKENGRLRLNDNAI
PSVFNSTTEEVHCQSIIENYEVEVEVPLDLSMSKLDEELPVALQRSVLVSDIITTPRKKTTVLFPELQITPKRPSCRTPK
RGRPQNSIVTPKTKKNKTKLKTLQKKVLRLKKRINNLKELLQDIKEKGLIEKNGFNVILEDFDGMSREIFNNQLKNKNKN
AKGRRYSDELKKFALTLNYYSPKAYKYCRTIFKLPHPTAIRSWTSSVNGEPGFFSEVFLFLKTLEIENKECNLVFDAMCI
KKQVIWDKQAHKFTGYCDYGDNLTVESSETAATEALVFMLVSLNGKWKLPIGYFLQNKTNAVRQAELIKTALTLSHQSGL
NVRGITCDGAFTNFSTLKILGCEFGEGFDNIKSWFSHPIDGSQIFFIPDACHMIKLARNTLGNCLVIESNTGHIKWCYFE
YLHEIQSNLSLKFANKITGVHLNWKSNKMKVKLAVQLLSSSTAKAIQYLKDNNYKQFKDSDETIVFCQRLDQLFDFLNSR
NPFSKGYKSPIFKSNLKFLKSKIIPFINYLYSLKYKNKLLXYKQKTFILGFAIGVKSMFEIAAKLFTENLNFKYILTYYF
SQDHIELLFGRIRQRYGANNNPNVIQFKTAIKQILLKNAITCSTNNNCNTFDEDIISTIFPFKWNKNKNNVLPLAVAGDD
NEDDKMEILNTCDLLNNTNSSYEDCKKNIIYYITGYAIKKNIFILDCNSCKQSLIKPTSDHNYNHSADYSKFIDFKNNGG
LISPSESSFKVVYQTEIFLLSLTNNLQTLNIPNLDLKITSLVNKKFALDKNIFKYLECNNVFTLDRPHKLVLIALLIQKY
LSIRLLHSFGKMYSTDILNPISNRHKLTKQILFMNQ
>CR1-4_DAn_pol#LINE/CR1 1341-4184  [Drosophila ananassae]
LSNNVFSCCYQNVRSILGKLSQFFTKSASFEFDAIALTETWLNSSVSDYEIFVPNYTVFRLDRPSFGGGVLIAVSIKYSA
ELITFPNXFGIEFIAVKITVGPSHIFMTCSYIPPSVDDTVYFHHLNAIKYVLSLVNDSDFVLIMGDFNLPQISWIPCEDD
NSLHSSCHNDFIDELIEIALSQINPILNTLSRSLDLIFCNRISSVTVNRSSPLSLPEDVHHPTLLVSVLIDVPNMHNYEA
QYRSKCFRKTDYNALRNHLAGIDWEYLSSFNCIDAATDSFYEVIHNALDKFVPVLSSSSSTKPPWFNKHLSRLKNRKSRA
YKMFLKSGSLFHQTNFLYIRNQFILLNNQLYKRYILNCKANFRNDPSSFYSFVNMKRKSSLFPPSLSYKNISDSSDHGIA
NLFASFFQSTYSSDSYNLNSTYPYNIPYINNIYLSKFNHLDVSNALSTLDISFSAGPDNVPSCILRYCSDILCYPLTTLF
NLSLDLSCLPKRWNESFIIPLHKKGSKILIDNYRGIAKLSAIPKLLEKMVTLQLQHHCKSIISSTQHGFVKNRSTTTNLL
EFTSIVHKGFLKRMQTDVIYTDFSKAFDSVNHRLLLQKLYLMGFPSNIIKWMTSYLSNRTQRVLFKNITSHVIKVTSGVP
QGSHLGPLLFILFVNDLPSVVSYATTLMYADDVKLCFSYSDHFLHRHLQFDLDEVFLWCSNNLLSLNCSKCKVMTFNRST
PHVISYSLGNHFLDRVSLMNDLGVLFDHKLSFNEHISLTVNKARGVLAFIKRWSKEFDDPFTTKTLYISLVRPILEYCSC
VWSPQYMVHQRSIESVQKQFLLFALKYLNWDSDGLLPPYSCRLKLLDLPPLQVRRTCAGAMLLHKLILGQVDSHLLLEKI
KFSVPNRSTRSFRPLWLPICRSNFADHDPFRVICKNYNLLSHLFSPELSLDVIKSKLFVFLLNNFPNS
>CR1-4_AG_gag#LINE/CR1 363-1412 [Anopheles genus]
MDCAICSTTINKDPVVCIGNLPFSECNSAFHPECIKLAATCVKEVARNRGLCWMCEKCRDSRSDLFSSISCLMNTLKDEL
KNAIRSELDQRISQLDPNRVMPQEREKIAPTVSTISLTDKTFHTSTDTPMSPTPTPVKQNSLPHSQSRMLSDNEHINPTQ
AILHTGTANDHINTDTIQFIPAPEPKVWMFVTRIAPTVTEENMKMFILGRLKCTDCSVKCVIPRGRVTSSLKYVSFKIGI
PSEFGELAFSPSTWPCGFVYRQFEFHQRTQKQFTPTLPVSCFPASNNSTARSFSTTNFMHNDVNCINVIPPTHTTQHSPS
PSHHLKNANSPETHLTQNNSSGSTFLSQH
>CR1-5_CQ_gag#LINE/CR1 307-1245 [Culex quinquefasciatus] 
MASACDYCAKQVKDEEPFVKCMGFCEGVVHMRCTKTGSLKMNTSFLKIINECFNMFWMCDECSKLMKVARFRTVMESVGD
AVDHMQDEQDRKNSELRDLITENGKQLLLLSKRVSSLTPTANKLGTPRNKPTPKRTRDSNPVPPKPLVFGTNEVASASVT
CIPPEESLFRLYVTRFANHTTATQVEGLVKNAIGQNELVQVTALVKKGVDPLTLPFISFKVAVNLGHKAAILNPAIWPGN
CGFREFEDLQRKSSSPSNGDGQRAKKPMLSLATIPITLTPSGSASPNPDNRDVEPFLTPRSGNSDGAPAPMDH
>CR1-5_DT_pol#LINE/CR1 1572-4402 via tfasty with DMCR1A_pol, 1 frameshift. [Drosophila takahashii]
LDNLSILYQNVRSLLGKLSRVYVNSLSTDADVIALTETWLNSSVSDQEIFADNFVVYRVDRPTLGGGVLIAVHNSLSSEL
FAFQNDHSIEFIAVKISLNSTNIYITCSYIPPKSDESLYLMHLSAIDLVSSATGDEDHFIVMGDFNLPNLLWVTSPDSNL
LFTESQHEFIDGLSDLSLGQINFVENNKDRLLDLIFVNNETLTILLRCSPFSTPEDPYHPTLLLKVEINAETRSTSATRV
KCFRRANFNSLSQHLGAIDWSSLKSCYDLETAVSTFYEFLHSSINIFVPDVSVIDSSKPPWFNKHLSYLKNKKSRLYKKY
LKTNLSVDLAKYVSIRSEFTIAANQSYARYIAQCRENIRSDPKHFYSFVNSKRKCNCYPSSLHYKSSSESSSLNISNLFA
KFFQSTYSPQSYSSSTPYPYPLPHINNIYVPYFEVKDVLKALLSLEISFSPGPDKIPSCVLRNCAETLSWPITFLFNQSL
LLSEFPRIWSESFIIPLHKKGSRSDVENYRGIAKLSAIPKLFEQLVTCQLQHMCTSIISPAQHGFVKHRSTTTNLLEFSC
LIHRSFLKNVQTDVIFTDFSKAFDSVNHSLLLHKLSLLGFPPILLNWILAYLSNRTQRVLFNNQLSSVVNVFSGVPQGSH
LGPLLFVLFINDLPNVISFATTLMYADDVKICLSYSDQISHHRLQSDLNELQSWCSINLLHLNHAKCKSMSFYRTSAHIQ
PYYLGNCILERISKVNDLGVLFDSKLCFKSHISVTIGKARGVLAFIKRWAKEFDDPYTTKTLYVSMVRPILEYCSSVWSP
QYNEQQKLIESVQKQFLLFALRQLNWDPNRHLPPYESRLKLIDLQSLKHRRMCGGVIFFHKLLLGEVNSPRLLSYIDIAV
PSRFTRTFRPIHLPICRSNFAVHEPFRVLCSNYNLLYTEISLENSIECLSAKIYSFLESSNNLY
>CR1-5_CQ_pol#LINE/CR1 1188-4682 CR1-5B_CQ_pol 92% identical [Culex quinquefasciatus]
TVFDTPLGELRRGAGPNGSLAPVFGCRLTSGCTTQSTEEAPTLSGTVAQSAASVHLSHPDPAAGSRVGVFQSSQSGKYAH
RLSPSPPDAYPVSSATPSSCLSRHNPDGDLRAAAPPQPTACWTSGCTTQSTEEAPTLSGTVAQSAASVHLSHPDPAAGSR
VGVFQSSQSGKYAHRLSPSPPDAYPVSSATPLRRPGRGQKSRLPCNESLNIYYQNVGGMNTRALEYCLACSAVSYDVIAV
TETWLKASTLSTQVFGNGYEVFRGDREQFVNSQKRDGGGVAIAVRHGLRARIVVSDEWKCAEQVWVAIDLDDHTVFICAA
YIPPDQTSSANVFEINAASVLAVSAMARPYDELIVLGDFNLPGLIWRPSGDGFLYADSALSTQAAHVTEFLDSYSSSLLQ
QINSFPNENNVVLDLCFVSCPDTAPPLVIAPAPLVKDVRHHPPLLLSLPVRLATEHTPVVCEVRYDYRNLDVPSMLELLQ
SIDWENTLDKDNLDEAVQTFTNILSYAIDRHVPKKPVTNARVPWQTSELRRVKAAKRSALKKFSKHRTLPLHNYYVRLNS
CYKRMSRQCHADHEVRTQKKLKSNPKGFWKYINEQRKEIGLPSSMFLGDETASNTEEICQLFAEKFSSVFTLEDLQPEQV
TAAASNVPTNGLGLNSIRIDRSKILEAVAKLKISNTTGPDGVPSIVLKKCIDGLLEPLYLLFNLSLSIGSFPKLWKHAFM
FPVHKKGDKRNVDNYRGISALCAVSKLFELAVMAPVFFFCKNLISEDQHGFMPSRSTTTNLLTFTTFVTDSFTARSQTDA
VYTDLSAAFDKLNHAIAIAKLERMGIGGTLLSWFQSYLADRKINVKIGDCLSAALMAFSGIAQGSHLGPLVFLLYYNDCN
HSLSGPRLSYADDMKIYCQVNNAADAQALQQDLNIFADWCETNRMVVNPTKCSVITFSKKRNPIKFDYQICGTLIPRENC
VKDLGVLLDTELTYKQHISYMISKASRQLGFIFRAAKGFTDVYCLKALYCALVRSTLEYCSAVWSPYYENSAVRIESVQR
RFIRFALRRLPWRDPFHLPSYESRCKLINLDTLAVRRNVSRALVISDALTSRLQCPAILRGLDIMAPLRTLRNTPFLRVP
VRRTNYAMHSALTGLHRAFNFVASLFDFNLSRDVIKNKFLLFFRR
>CR1-3_DK_gag#LINE/CR1 411-1412  [Drosophila kikkawai]
MSXNMVCFAKNCKKSITYGELTITCWLCDNIVHAKCIGVVARTVDDVAKNIGVRYCCEACREVEREMMSFMRQTRGGFKE
LLXXFRKTQDMLLALDTQFNXLKLLNESPRRKKTATGGQHIGGSQPPVIGTAQQPPSTLPPTPGQIPRVLRSSAKKDSVP
ECVAGATVPPVLPSSVLSTGGSQLLSQPSQSPNPSPCQGIRPGLPAESGMVAQSAVPKPLTAIPPTKQLFVSRLSPDQTS
EDVIAFIQGKVKVDREKIKVEKFKFSYPRNISSFKINVPDEVFGTLCSAETWPQYVVVKEFEGTKKKKRPVGITLPRPDL
PNAPSTSSNSVPKN
>CR1-2_DT_gag#LINE/CR1 421-1469 via tfasty with CR1-1_DK_gag, 1 frameshift. [Drosophila takahashii]
MSACCMKPCLLNGKITSRQPTIGCWLCNNIAHPKCADLGHSAGLVADRTKSNSGLDWTCPSCHHIKVNIMAFIRQTDLEY
QSLLAGFKDLFNRFEKAESNFKGRILAAASHNAVATSDHVPVAADSGPDTGASSCLQSTAHSSTASTAVSSGYVPTLESY
RLATSNASTVVTDGCAADASPGLTPAAASFGPPDPIAPADLHPVNFDQASTSHAAAVGSGIILTPANTNTSPSQSTLCGV
AQRVPMPLSGVAPKKLIFVSRLNPGASEDDVKNYLSSKLNVSRSVLTVLKFKFKQRREISSFKIGLPEEHLDKVLDVSIW
PEHVIVHEYVHKHNPRVHGPQIPSTNASKN
>CR1-1_DRh_pol#LINE/CR1 1484-4315  [Drosophila rhopaloa]
LASSFLLCYQNTRGLLSKLTKLYSDSFSFPYNIMVCTETWLRPDILSSEILPGKYTIYRLDRQSRRGGGVLIAVDSTFSS
ELLTFEEFYDIEFLGIKLSFPGSFVYITCSYIPPSSEFPIYANHLSVIQSISKKLSDRDQLIVLGDFNIPSATWSPDENS
NILLPLAQHDFIDGLLDIALSQVNHVKNSLGRLLDLCFVSNSEGVCLSRTSPLTQPEDPYHPTLELTVDARTELNKKSEK
SVKRIRCFRKANFHLLNTFISGYDWSEFYSCTNVAKAVNIFYNALNSFFYLCVPLYYPSISNKPPWFNKELSHLKNIKSR
LFNKFKMCGSQSAFSRYLRARSNFIVLNARCYKSYLTRCRVQFSQDPKQFYNFVNTKRKSACYPASLSFENSTANSDQAI
ADLFAQFFQTTYSVSSRPNPSYSNAIPKSNLIFCPRLSESSLLLDLHKVKPVYSPGPDGVPGCVLRYCAETLCRPLYKLF
TLSLKTSHFPLIWKESFVIPLHKKGNKCNTSNYRGISKLSAIPKLFENTITPHLQHLCRSIISPCQHGFIRRRSTTTNLL
ELTSFVINGFRKNMQTDVVYTDFSKAFDSVNHSLLVLKLDLLGFPCDLLTWISSYLSGRTQRVLFKNSISDLIRVTSGVP
QGSHLGPLLFTLFINDLPLVLTKSRVLMYADDVKLCLQYNEISSSSDLQSDLNAFQTWCCENLLDLNSAKCKVMTFFRVN
PQYATYTLGGCALSRITHVDDLGVLLDPKLKFCDHITSMVNKARGVLGFIKRWSKEFDDPYVTKTLFISLVRPILEYCSA
VWSPQYGVHIDRIESVQKNFLLFALRGLNWNASLILPSYSSRLLLINLPSLVNRRTMLGTTFIYKLIHGDVESPELLGRI
SFSVPNRITRNYVPLTLNICRSNFDMHEPFRVLCNDYNRLYHIISTTDSLPSLKXLILSYLAQN
>CR1-2_DT_pol#LINE/CR1 1469-4318  [Drosophila takahashii]
LNNSFSLHYQNVRSLLGKLSKLHVNSVSFNANVIAFTETWLNSSVSDCEIFAGNYVIYRCDRSVRLGGGVLIAVKSNLVS
QRIPIIGTDSTLEFVAVRIKLHDYFVFVSCSYIPPRSDISLYLRHLDQIQSIHTTLGDNDHLIVMGDFNLPALSWMPSTD
SSALVPTTAHEFVHGLIDLSLGQLNSVINCSSKVLDLIFASEFANAYVTRISPLSNPEDAYHPTLEVTLEASAPLLSCPE
IEPATFRCFRRAKFAEMNRHLSQLDWSFMDSNDNPSHIVEQFYSLLYLAFDKFVPSFPTGNASHKPPWFSRRLSFLKNTM
SRLFKKYKRTGLQVDHSRYLIARSNFLVHNSDCYNSYLNRCRIEFQDNPKQFFAFVNSKRKSQLFPSCLHLDTISASSDS
DIANLFAQFFQSTYSSFSYDNTSSYPYPLPHSNCFFTPLISEDDVLQNLHTIKTSFSSGPDLVPSCILKKCADALCKPLS
KLFQISLLHSFFPEVWKESFIIPLHKKGSKSDIKNYRGIAKLSAIPKFFEQLITAQLQHQCSSVMSPTQHGFMKRRSTTT
NLLEFTSVIRSAFKNDNQTDVIFTDFSKAFDSVNHQLLLKKLTLLGFPITLTKWISAYLTNRTQRIAFKSTVSNLVHVTS
GVPQGSHLGPLLFGIFINDLPQVVLSAHVMMYADDVKLCLPLSNPDSQALLQADLNNLNSWCIQNLLFLNNSKCNFMSFY
RKKLLLTTYSIGSNELERINSVTDLGVLFNHNLNFSNHIGIIVSKAKGVFAFVKRWSKEFEDPYTTKHLYISLVRPILEY
CSCVWSPQYTIYQDLIESVQKQFLLFALRGLNWETHRHLPSYVDRLRLLNLPSLKDRRTCHGVMFLHKLITGLVNSSYLL
GQIRFSIPVRSTRHFRPIALDICKTNFELHDPFRVLCSQYNELYFLIFSECSVNLIVTNILTYLSLPPST
>CR1-3_BF_pol#LINE/CR1 56-3559  [Branchiostoma floridae]
MSLAVCRSVVLLFILTNAAKATVVGLSPGKVSRAKSLCLLSPGNTGPPSWYPVLSLNPSEATPLSGFYFGTTGLAMKQAR
CLKTTDKLCLMYLCSILMAQAADLETNPGPRPPKYPCGCCGKAVTFKHKGVCCDSCDNWFHHDCQGLSSFMYPYLGNSNV
SWICLNCGLXNLSTSFFDSHTSVESPNPFSPLSDSSPGLPQASSSPKSPHVRRRTGGRPLRLVNANFQSIKNKKVELETL
VEETKPDILVITETWLDDTCNISEFFPNHLNMSVFFKNRADDSHGGVLIAISNDFICTQEPQLETECEMVWVKIQLVGAK
SLYICAYYRPHVGDATSLEQLGQSMDKICNQRNNHVWIVGDFNLPGWDWTDPQQPVLKPSCAYPGLHRQFVDLLCDYNMS
QIVDKPTRNENTLDLVLMSNENCVNCVRTLPPIGDHDLVFVEADLHPCKHKAKSRKVYLYKRSNWEKFRDEMTDFKSQFL
ELANTDTNVDELYNKFTSKLSSCVEKYVPSKTTNDRKHLPYITPDLKRLMRKRDRYYRKTIGQNTPERKDRLNQFKKEIN
KKMKDCYWNYIEAVVLDIDVSDHDQGKSSAKLGTKKFWGFLKSMKSERSGVDHIKSNGILVSESKEKANLLNQQFQSVFT
REPTDDPLPDMGPSPHPSMPDITIEESGVHKLLKNLNPHKASGPDQVHAYVLKELSDIISPILQVIFQKSLDTGTMPESW
KEANISPIYKKGDRYKVENYRPISLTSICCKLMEHVIASAMMNHLDTNDILYDMQHGFRQGKSCETQLLSLMDDLAANRN
NGIQTDIVLMDFAKAFDKVPHRRLLHKLEHYGVRGKALNWIETFLTGRTQRVLLEGECSDSVPVTSGVPQGTVLGPILFL
AYINDLPNHAAYAKVRLFADDCILQMAVQEPEDCDKLQHDIDSICDWERTWLMQFNPSKCEVMSIPSSRKPLNHPYTLHG
SIMTKVSKAKYLGLTISANLSWNCHVDNITAKANRTLGLLRRNLRIASVAAKERAYMALVRPSVEYGASVWDPHTAEQVS
RVEAVQRRAARYVCNNYQRTASVTSMLKDLGWQPLSERRKMARLTTMHKILHNTISVPHTSSLVPAARCSRRTNHAFKLQ
TIASKNNYYRLSYFPRTIKKWNELEPSVAEAESLSQFKTELGRASLH
>CR1-3_AG_pol#LINE/CR1 2314-5046 [Anopheles genus]
QSCTASGDAPRSAHPSLSIYYQNVRGLRTKTTNLRLALSESEYDFIILTETWLTQSIPSSLLTDDHYHIYRCDRNLSNSA
LSRGGGVLIACSSSIPTCEIASPNTILEQLWIKTLLPGVSVYIGVVYIPPSHANDPAVMNALHDSVREISSRIKESDLLY
VFGDFNKPDIRWELTNTSEATDCSPCYSVMHYAPLCNSVANTDFVDGLHSTGLFQLSGIANQSGRQLDLVFANLAATNIL
CDSITPLHSVNGTSALENSLPYVTHCSIPLLSEDFHHPSLDMMIYYPVQLSHTTNSHTRSTVNRNFFKTNVERMNSLIVS
FDRNFDCSNFATIDEATDFFSVFMRSAINSCVPVAQRKSGPDWSNASLRRLKKIKSKAYADYSRTRSSLHRRIFFDALNN
YRRXNRVLYRSFIRRTERQLFSKPTRFWSFWNKRRNIRSIPPSMSYNGZTSIDTSDICNTFANRFADAFTLPVHNPNTLA
EATRNTPSDAIDFIIPTIDEALIARTLNDIKPSTSSGPDNIPAYILKHCRQSLAPILAKIFNDSLMRGTYPASWKHARMV
PIHKKGSRLHASNYRGIVSLCACAKVFELILYNPLLTAVQNYMSPSQHGFLPRRSSTTNLAEFVGYCFDNMDRGTQVDAV
YIDFRAAFDSISHDILLSKLKKLGFLDWHITWLRSYLTGRSYYISIGSHRSHSFTSSSGVPQGSNLGPLLFLIYINDLSF
VLPPGQHLMYADDVKIFAPVRNDSDCVRLQTILENLDSWCSRNALQVCADKCQCISFSRARHPITFTYTMLNTALARTTC
IRDLGVLLDQKMSFRPHIDSVVAKGNQLLGLITRTCSEFTDPMCVKSIFCAIVRSCLEYCCPIWCPLGVGDINRLEAIQR
RLTRYAVRLLPWQSHHARPTYHQRCLLLGH
>CR1-6_CQ_pol#LINE/CR1 198-3644 [Culex quinquefasciatus]
MEDPDSPVTVAPPLCCDVSSSGHQSRPGPVYGSRERVFQTPNAGKYNPAFHERDVFDPDARLHSSDDRTTPVHRDLPSCS
YRNPSPSRWPSDTADPGRTNPRIMEDPDSPVTVAPPLCCDVSSSGHQSRPGPVYGFRERVFQNALPGMYSRFSVQSTLPD
ASQPSSSQQSSDAPLTHPRSLARVSSRIQQCHLYYQNAGGMNGNLDDYLHASSGECFDFIALTETWLKENTLSSQVFGPA
YEVFRCNRGPNNSRKVEGGGVLVAARRCFKPRRIDQDAWKAVEQVWVSLKLSDRVLFLCVVYFPPDRIYDKDLYKIHLDS
IASIAERTRPIDDIVVVGDFNLPKLTWTPSRNGFLYPDPDRSQFHPCARDLLAGYNLATLQQINHIENEDGRRLDLCFVS
AQDFAPTLIVAPAPLAKIVHRHPALVVTIDGCHSSAVRDRPDTVCYNFRGADYDEMSLALRNIDWDSVLDSVDVDAAVDT
FSSILRDHIDHFVPKVRKRNSTHLPWQTPELCNLKTQKRAAFKIFSRCGTLSLREYYLRMNSKYQRLSRSCMASYQRKKQ
RELKANPKKFWKFVDENRKESGLPSSMRLANEEAESTAEICRLFAKKFSSVFTNEHITDDEIQIAANSVPRCDRSLPMID
IDDDAVSAAITKLKHSSSPGPDGIPSTLLKRCSSALVSPLLHLFRLSLASGKFPCAWKQAFMFPVHKKGDRRNIENYRGI
SALCAASKLFELVVIGPIFAHCRQELSSDQHGFFPKRSTATNLLCFIEFVIDSFDNRSQTDAVYTDLSAAFDKINHSIAI
AKLEKLGFCGSLLTWFRSYLSGRSLRVKIEDTLSESFDATSGIGQGSHLGPLVFLFYFNDANFTLRGPHLSYADDLKLFA
KIDCLEDAEALQRELDKFADWCEANHMVLNPGKCQVITFSRKHSPILFNYHLGDTLVERVDHVKDLGVILDVKLTFKQHV
SFITAKASRQLGLVIRMTRHFTDIHCLKTLFCSLVRSSLEYCSSVWTPHYNNAVYQLERIQRRFVRYALRLLPWRNPQQL
PPYEDRCQLMHLDTLQLRRDLARALTVSDVLTDRIDCPSLREKITLTAPARQLRHTPIMQIPFRRTNYSANGAIVGLKRA
FNKVSSVFDVSLSRDVLKSKFLSVLRRMF
>CR1-16B_CQ_pol#LINE/CR1 58-3837 [Culex quinquefasciatus]
MGRFTKSRLEVPRAPXTVEPNHSPSSNYFSGSAARPGPVFGHGNGAFQAATSGKYTHPLRTSPRPDALSLSSKLRXVDEE
MLAVAERCVADGPGRMYRGIEVEPRFPVTAVPFTTNTLSCLSSSQHSRPGPVNGTRSGVSRALLSGKYMWFPRTILPPDV
PEVFSQRYVPTTEPQPRLADNSAFSVPEQDCTFQCARAEIADLPDHVDFPCFPVTITPFITANHRSDESDTSGRSHQGSE
ECPRPPYTVESSQRSSPGVSTSHQSRPDPVYGHGSGGFRPPPTGEYNQINDSXPALNHQSLQQSKGTLSFITVYYQNAGG
MRTKTKQFFLALASXDYDVIALSETWLQDDIVDAELSSNYNLFRQDRNGLTSDRSRGGGVLIAVKKAHDFTCTRVLSAGY
EHLEQVAVRIKARNHTVYVCCIYIRPNSPPDVYTSHGTAVQELVDLSSNDDSIIVTGDYNLPHLAWTFDVDVNGFIPLNA
STEQELALTENVVATGLLQICSLANVNGRILDLAFVNDTLSVELIEPPKPILRTDRHHKPFILRVDYPDIPGVATRIEDA
EPDFSRCDFDRVTESLSSIDWDDILQDQDANTSTTIFYDVLYEIVRQFVPSKRVSRNRTEKLPWWNADLRNRRNILRKAR
KRLFKAGTPENQTAVDRLEIEYELLQDSLFRDYLNRVQVDLKDNPSSFWKYVRSRKRTSVLPTRISLNGSTAENPEDAAN
VFADFFSSVYEADAPSASNDYLNDLPTYDVDFPQPEFSQAEVKSALDAVDPSKGAGPDRLPPSFIKRLSEHLAKPVSVIF
NRSLSEGTFPDEWKLAAITPIHKTGSTTAAENYRPISILSCLPKVFEVLIHEGMYSSAQVVISEFQHGFVKKRSTVSNLM
AYVSALNENLEKFKQTDAIYFDFAKAFDKVPHTLIIAKLDRLGFPRWLTAWIRSYLSGRFGYVRLGGVQSRNFPIPSGVP
QGSHLGPLIFILFINDICQRLQSQKLLYADDLKIFRTVASTIDCVALQQDIDAIQEWCNLNGMKVNPSKCKSISFTRSPA
PIRYDYTFDRHEMDRVCSIRDLGLLIDRKLSFSEHVSSTTAKAFALLGFLRRNTAEFENINALKTLYITMIRSILEYAVQ
VWAPHHANQRDRLEKVQRRFTLYALRRLPWRNGVWRSSYSDRCTLLEMVSLEKRRTFLQRMFVFDVLTGRIDCPQLREEI
TVHRPTRTLRNQPLLRIPFHRTLYGYNRPIDRCCRIFNSVSDEYEPSMTRERFKRKILAL
>CR1-16_CQ_pol#LINE/CR1 1485-5537 [Culex quinquefasciatus]
MMSSFSPGRAVESLVRVPRLPDATTSSPRYHLRTPASRSHQSRPGAGVGVGGGVSQPAPFGKYPSRLQHFLPDVRPTSSP
CTITTAAQTAIVLQLSARAIQSLPGRTVESLVRAPRLPDATTSTLRHHMRTPASRSHQSRPGAGVGVGGGVSQPAPFGKY
PSRLQHFLPDVRPTSSPCTITTAAQTAIVSQLSARAIQSLPGRTVESLVRAPRLPDATTSTLRHHMRTPASRSHQSRPGA
GVGAGGGVSQPAPFGKYQLSSFHTRPDARSAFSATVPSALQTSPAAPGHRNATSVAVRSVRLVSPCPASSITANHHTDEP
RTSGRTHLGSEECPRPPYTVESLPTSSPGVSSSQQRRPDPVYGQGSGGFRLQPSGEYNEANDSGPALNRRHFQQPNGPLS
FITVYYQNAGGIRTKTKQFYLALASSDYDVIALSETWLQDDIVDAELSSNYHIFRQDRSALTSDRRRGGGVLVAVKKSHG
VTSTRVLSRGYEHLEQVAVRVKVRNHIVYVCCIYIRPNGPPEVYASHGTAVQELLDLSSHDDSIIVTGDYNLPHLSWTFD
DDVNGFIPLNASSEQELALTENVVATGLLQICSLMNANGRILDLAFVNDAHSVELIEPPSSILRTDRHHKPFVLRVDLLD
VPDEATGNYEMEPDFRRCDFDLAAEALSIIDWDAILLGRDTNATTTILYDVLYEIVRQFVPVRRIPCNRTEKLPWWNADL
RNRRNILRKARKKLFRASTPENRATVEHLEAEYESLQDSSFREYLNRVQVDLKENPSSFWRYVRSRKRSSVLPARISFNN
TTAENPADAANIFADFFSNVYETTAPAASADYLNTLPTHDLQYSQPEFSQVDVQTALDVVDPSKGAGPDRLPPAFIKRLS
AQLAKPVSIIFNRSLSEGVFPDEWKLAAITPIHKSGSTMAADNYRPISILSCLPKVFEVLIHEGMYSAAQVVISEFQHGF
VKKRSTVSNLMAYVSALNENLEKFKQTDAIYFDFAKAFDKVPHTLIIAKLDRLGFPRWLTAWIRSYLSGRFGYVRLGGAQ
SRKFPIPSGVPQGSHLGPLIFILFVNDICQQLQSQKLLYADDLKIFRTVTSAIDCVALQQDIDKILEWCSLNGMKVNPSK
CKCISFTRSSAPIRYNYSFDRHELDRVSSIRDLGLLIDRKLNFSEHVSATAAKAFAMLGFLRRNTAEFENINALKTLYIT
MVRSILEYAVQVWAPHHANQRDRLEKVQRRFTLFALRRLPWRNGVWWSSYSDRCALLRMQSLEQRRVLLQRMFVFDVLSD
RIDSQQIRDEINVYRPVRQLRNLPMLRIPVHRTLYGHNRPIDRCCRFFNEVSNEFSPGLPRKNFKLKIINL
>CR1-25_BF_pol#LINE/CR1 1-2973, fragment  [Branchiostoma floridae]
LSTRGREVKEENGKSKCKIGERKGKMKARNTNEMKLDVMYTNIDCITNKKAEFLAIIDETHPDIIVTTETKPKNPRFHMT
KTDLHVDGYNLFTNVEEEGVRGIAVHTKNDLNVMEPNTALLQDSASEVQPIEIKLRNNDKLLLIAVYRSPNSTPENNEKI
NTLIRNINTLGYSHILIVGDFNHPEIQWSEGAGNTQSNKNEAFKFLEATNDAYLYQHICEATRHQLRQESNVLDLLLTNE
GDMISDLIMRPPIGKSDHVVLNFKINCYANRTQYKNETCQYNKGDYDKMREELSLDWQEILGKLNVEDCWEVFSGKVAES
ANRNVPKVSSRKKKRKLSWRDREVNKKMNKKQKLWKKYCESRTKDDYIKYTRARNQVRWATRKAVKTYEKEKARNIKGNA
KIFWKYVNSKSKVRQGIPDLEDGSSVAQSDTEKAELLNKFFVSTFTKEDLQHIPIPTERHYNEEITDIDICFEEVQQRLK
NLNPNKAMGPDNVHPRVLKELADTLAVPLQILYVKTVQEGKLPDAWKTANVTPIYKKGCKKSPGNYRPVSLTSVVGKILE
GLIRDAIVKHMKVNNLFTPHQHGFLPGRSTTTQMLECLDEWTEWLDRGTPVDAVYLDFRKAFDSVPIKRLLAKIQSYGIT
GNLLNWIESFLSGRRQRVCVNGEKSEWAEVTSGVPQGSVLGPVLFTIFVNDMPEIVQSKLKLFADDTKLYRSVVQREECN
KLQRDLQVLQDWAIKWQLSFHPMKCTVIRLGKGHPDYTYSMLDNETRTLLEFTQQEKDLGITVDKELSFSKHISNICNKA
NQIAGLIWRTFAYVDKEVFLLLYKSLIRPQLEYGAPAWSPYTWKLALDLERVQKRATKRVPGLRSLPYEERLKALNLPTL
VYRRLRGDLINTYKFLHGIYDTSCPFELNTSTRTRGHCLRIKRQASKSNRRSHFFCIRVVSWWNNLPEPVVTSPSVNCFK
ERLDNHMKKHSVYYNFRALDDPQLPGMSVT
>CR1-30_HM_pol#LINE/CR1 899-3897 via tfasty with CR1-28_HM_pol, 1 frameshift.  [Hydra magnipapillata]
MAVLSTHNPVSNYVKSEVLLCKSIPKYHLCCRYTNATSLNNKFDLFLLEIAVYNPDIFIVTETWFNSSSAINVSGYNVFY
NNRSKSNSTKSHGGGVAIYVKNKYIAYTPYDLASEEMTVEQVWCVIKTENENILIGSIYRPPDATELTNQKINKIINIAK
KSVDCNKYSGLLLAGDLNYPNIKWNENDENIQTVLKNDRQAQIFLDNLNDNFLTQNVTKPTFNSGTLSEGNTLDLILTDA
PERISIIGYNPPLSNLNNAHQILYWNYILKKPTTSKSSYGKSKFNYKAGNYQEMNNSFHSIRWSHIFSNKNVDECYKIFV
NKYQELSDCYIPKKVHKHIALKPYIDKQIKTEIRHKTTLWNKLISNKSKSPILVQQYKIQSKLVKNMVRLKRIEYEKKIS
ETSKRNPKLFYSYVNSNKKVKGGIASMSNEYNNIVTNRESIANILNNSFNSVCVNEDKHNIPNIPQKTEIILEVDINNKI
TCHTIEKKLKKLDVYKAIGVDGISPYVLNKCHSTLCEPLHLIYIKSLTEKKLPELWKLANITPIFKKGNTNIASNYRPIS
LTSIPCKVLESLIRDEIMDYLINNSLLNENQHGFRKNKSCTTNLLETLDIITDALENGHSVDMLYLDFEKAFDKVPHSRL
ITKLQSYGIVRNYLGWIENFLTNRKQRVVLGDTVSDWLPVISGVPQGSVLGPLLFLIFINDLPDQVKNPIKLYADDSKII
NIIKNPNDSISLQNDINNIMAWSSIWLTKFNYEKCKVMHIGKKNPNATFIMTDIDCNYNYTLCNTKAERDLGIMVQSDLK
WHSQVDSATSKANRMLGTIKRSFKYLDVNMVKMLYTTFIRPHLEFAVQAWSPFLKQDIDMTEIEKIQKRATKLAPTIRKL
SYEARLNIMQLTSLEERRLRGDLIQQYKIQHGHDKINWVANDCGNALEEGPCLRQHKFKMRKPFSRNTFRYHFFQNRVVN
AWNSLPSEIIEATSINNFKNKLDRAGFCRNYLLKHKQKTK
>CR1-26_CQ_gag#LINE/CR1 12-404 via tfasty with CR1-3_CQ_gag, 1 stopcodon. [Culex quinquefasciatus]
TVEPRPQRFWLYLTGLNPKINTNDVKLIVERCLGTSLDLDPKLLVPKDTDCSRYRFVSYRIGLDPKLRDKALDGNNWPRN
LGVREFEFFDTDSKNRSTPRVSPAExWWIETSATHHLYKVPATSSSRPWGA
>CR1-16_CQ_gag#LINE/CR1 376-1413 [Culex quinquefasciatus]
MSATSTSNISKNTILCHACAEDVLDEYIPCQGFCNAVFHPNCSGVKPALLKEIASHRQIFWVCKSCTNLMVDLRHRRSIQ
CAYEAGQELSLSHHNRIVEQLKLELLTVLKAELSANFAKLVASNSLTPRSSSLNKGGFRGSGSRRLFDNNPAPPLGPNPI
PPKPVTGKPGGPADVPERIVAKGFGAPAGDDSPRFWLYLSRVSRNVTEEQITKLAIDRLGVSEIKAKRLVAKGKDVSRMR
FISFKVGMNFDLKDKALESSTWPDGLLVREFEERSGEIFWEPTNAVNFQQNPTPPVPPQDPRNTPTPKSTPVSMPLESKE
MMTNPKDTEPTSPGSQGCSPMDLWTK
>CR1-9B_AMi_gag#LINE/CR1 1-1044[Crocodylidae]
RARGAAARDPAPAAPPTXGSSEVSTQAEPCPPVCXXGLAGTLPSGERGXPLTCPSCVHLWALEEQVRELQEAVSRLRGIR
EDEAVIDGYFHSLQLQMPTGETPREESAAEEWKTVTSGPRQQEPVSASPLHLGNRYGALAALVEEAVEEHSPAEEDTEEV
VPAXPAGQAGGPLPRQKKKXRVIVVGDSILRGTEGPICRPDPMVREVSCMPGAKISDITEKIPDLIKPSDYYPMVLVHVG
TNDVAGSSPDCIMKDFHELGVGLRKSGAQVVFSSILPVGSSRRRQDACIRVVNRRLQRWCLQEGFGFYNHDQHFQGGGFL
GWDDLHLSPRGKHLFSRRLADLLQRALN
>CR1-8_AG_pol#LINE/CR1 1-1736 via tfasty with Q_pol, 2 frameshifts.  [Anopheles gambiae]
YISSIERHPRKFWRFMDSRRRSKHNHGHVTxDICNIFAERFSDAFSxVDQTVISRATSYTPLNMIDYTIPTFDIRTVEKC
LKSLKPSTAPGPDGIPSYIISKCYQSLAPVLTNIYNTSLSSGIFPRLWKTSWMVPIFKKGDRSCASNYRGITSLCAVSKA
FELLLYGPMLSATSNYIMDNQHGFVPKRSTLTNLTEFVSFCKRNLDSGGQVDAIYTDLKAAFDLISHDILIAKLQKLGFS
EQIVKWLHSYLTERSYKIKVNDHTSREVLGTSGVPQGSNLGPLLFILYINDVGQLLAEHRFLLFADDVKLFAPINDTNDC
INLQHAINLFSIWCRDNAMVLCIEKCRVLSFYRSRSCTRFNYQIDNISVERTDTFRDLGIILDTRLTFNDHLENIVSRGN
QLLGWIIRSTQGFRNPMTIKTIYCAYVRSVLEYGSIVSDPCTEQWSNRIEAIQRKATRYAVRLLPWRQGDVLPSYHSRCL
LLGIQSLKKRREIAKCLFISGLLNHHIDAPTLLATIEFNAPSRNLRTRQFISVPRYRTRFGQSDPMSAMCRTFINNFDLF
DFNIPQNVFRDRLRTQLT
>CR1-10_Crp_pol#LINE/CR1 1461-4211[Crocodylidae]
TKFVGGWGSTGARENSTRCRTCPGKSSGIYQGTSCLSGRGVPRAPTGGLRCLFTNARSMGNKQEELALLLASSKIDLVGL
VETWWDETFDWALDIEGYRLFRRDRKGKKGVGGVALYVREQYTSSTFQMGPEEGLTETLWVKLQGGRGERDLVVGVYYRP
PHQEEELDLEFSRQLGEAVRAKDVVVMGDMNYPDINWEEQSARSSHSRRFLMCVQDLHLVQEVLVPTRENAILDLVLASG
DDLVGXVLVQGRLGDSDHEMIQFAIQRKVGRVTSTAQMLDFRKANFNVLRAVVREALGAQGVASMGVQERWSFLKEAILG
AQQDAIPLHRKVGKGSKKPSWLSADIQAGLRAKKKAYWRWKQGAGTKEEYTSLTRACRDLVREAKAALELRLASGIKDNK
KSFFKYIGSKKKSRGNIGPLQGRAGQLVTDAREKAELFNKFFASVFLSADNGVLSGDSVERPRKDASPPTVSSDLVKDYL
EGLDVSKSAGPDDLHPRVLRELAGVIVEPLARLFEDSWCSGQVPEDWKRANVVPIFKKGRKEEPGNYRPVSLTSILGKVF
EKIIKGHICESPAGEVMLRGNQHGFVPGRSCLTNLVSFYDQVTKSLDGKEEVDVIFLDFQKAFDTVSHPILVGKLRDCGI
DECTVTWVANWLQGRTQRVVVDGSMSTWEGVGSRVPQGSVLGPVLFNIFISDLDEGVESTLFKFADDTKLWGKVNTPAGR
DRIQADLDRLEKWADLNRMRFNKDKCRVLHLGRGNQRYGYRLDHLSSTEAERDLGVMIDSMMNISCQCGEEIGRANHTLS
YIHRCISSRSKEVILPLYAALVRPQLEYCVQFWALHFKRDAENLEKVQRRAMHMVGGLCGQPCEKRLRDLNLFSICKRRL
RGDLVAAHSLIRGHQQGLRESLFTRAPLESPGTMATS
>CR1-15_BF_pol#LINE/CR1 145-3358 via tfasty with CR1-8_NV_pol, 1 frameshift.  [Branchiostoma floridae]
ILLILLSGDVQPNPGPRAPKYPCGMYNPTLAHVPRSTPVACRKAVRWEKVDGRRAVCCDTCDTWYHTDCMGMTTPVYDAI
NHPSVSWICCSCGLPNFSSSLFSSIVFETPNCFSFPTPNSSSCTSPGSSVGSPVATSTPTTQVPNPPPRDRTQSKPLRAA
VINFQSIRNKTSEFHVFCDTVQPDIIIGTESWLDPSVGNSEIFPPSYTAFRKDREGRGGGVFIATRSDIIATHHPELDST
NELIWIQINMSHCKTMYVGAYYRPPDAGLDDYLALEQSLTNIRQKPGNPQIWLAGDFNLPAATWGLDSTSNSTSAASSLT
GKYINLANDCGLEQVVSEPTRRIGQAANVLDLFFTSNPTLVEKCKIVPGLGDHDIPLIDVHAKPQKTKKKDRLVYLWRKG
NMDELQKDMEEYSNNFLRQAPKRTTTENWEDFKTTLLSAANKHIPQKRARNQHSQPWITPQIRRAMRKRDKLYTKARKTN
TEEAWSKFKACRKGVKQRVRKAHSVYKADFLEENIQENPKAFWNYIKSLKQDSTNITSIRHQGILTSDPKEKAEALGDQF
SSVFTKEDLDTRPTLGNPVTPPISQLHISVEGVAKQLSDLNPNKATGPDGLHPRLLKSVSTQIAPVLQSIFTQSLATGDV
PEDWRSANISPIFKKGDKSLPSNYRPVSLTSVCSKVLEHIIHSHMMKHLDKYNILSPAQHGFRKGLSCESQLLVTTHDLT
SALDQGKQVDAIVLDFSKAFDMVPHNRLLSKLQHYGISGNLLSWLQAFLTQRTQAVVLDGESSKPTKVLSGVPQGTVLGP
LLFLLYINDLPDIVGSNVRLFADDCLLYRIIEHPSDVQGLQADLDALTHWQNQWQMSFNPSKCHTLHITHKRKPIISQYV
LCSENLTSVKTHPYLGVQLSHDMKWDTHIKYATGKANRILAVIRRNLQHCPPRVKSTCYKALVRPHLEYSAAVWDPYTIS
GAQALERVQRRAARVTVNDYRRTSSVSDMLTSLQWPLLADRRRDARLITFYKIVNGIINISPTQYLKPAQRRTRGSHMFK
YQLTTAKRDCFKFSFFPRTVVEWNRLPGHTAQAPSVEAFKAGLAALP
>CR1-10_DTa_pol#LINE/CR1 1640-4486  [Drosophila takahashii]
LXFLIHYQNVRGLLSKLSKLFLDSTTFYANVIAFSETWLNSTVNDSEILSKNYXIYRNDRPCRRGGGVLIAVKSNLTSEL
INCPNSSSIEFISVKLSLPKSNMLITCSYIPPGSEIDMYLLHLSAIRYVSSLADDNDHLIVLGDFNLPNVSWFQSNDSIL
MTPRTQNDFIEGLIELSLLQINWISNHNERILDLTFVSDNCDAAVSRVPPLSLPEDNHHPTLQLSLNGVFHSARASARPQ
LRFCFRKTNYSQLLHSLSITDWSCLTDVPVADGVAYFYGVLYSLFDKYVPLFSGKTPYSSPWFTRQLSYLKNKKSRLFKR
FKQTGLQTDFAKYSVVKSDYLKHNSECYNNYLARCKNDFKSNPKLFYSFVNAKRKSQSFPPSLFFNSAVASDENGISNLF
ADFFQSTYTNADSSKDFNYPHSLPHLDSIFNPVILEADVLQGLIALKLSFSAGPDMVPSCILKNCANFLSSPLTILFNMS
INQCNFPSAWKESFIVPLFKKGNRSDIANYRGIAKLSAIPKLFEKLITSQLQHQCRSLISPCQHGFTRCRSTTTNLLEFT
SLVNRGFLHKQQTDVIYTDFSKAFDTVNHCVLIKKLNLMGFPPKLLAWLLSYLTDRCQRVKYNDITSKTINVTSGVPQGS
HLGPLLFGLLINDLPQVIKSATVLMFADDVKLCLSMSLPDSCSRLQLDLDYLQTWCKLNNLYLNYSKCNVMTFYRRNPSL
YSYSIDSNVLHRISTIQDLGVLFEHKLCFNDHISLICNKARSLLAFTKRWSKEFDDPYTTKLLYVSLVRPSLEYCSCIWS
PQTLTCQNMLESVQKQFLLFALRGFNWDAGRRLPSYNARLRLLDMPTLINRRICHGVMFIHKLINGDVDSSFLLSSLNWN
VPCRTIRRYRPLSLPFCRTNFALNDPFRVLCEKYNDLSHVLLYGVSSVSNYNKLLLLLSSNM
>Tc1_TF_tp#DNA/TcMar-Tc1 389-1411 very similar (>90% identical) TC1L_SS excluded from protein db [Salmo salar]
MGKSKEISQDLRKKIVDLHKSGSSLGAISKRLKVPRSSVQTIVRKYKHHGTTQPSYRSGRRRVLSPRDERTLVRKVQINP
RTTAKDLVKMLEETGTKVSISTVKRVLYRHNLKGRSARKKPLLQNRHKKARLRFATAHGDKDRTFWRNVLWSDETKIELF
GHNDHRYVWRKKGEACKPKNTIPTVKHGGGSIMLWGCFAAGGTGALHKIDGIMRKENYVDILKQHLKTSVRKLKLGRKWV
FQMDNDPKHTSKVVAKWLKDNKVKVLEWPSQSPDLNPIENLWAELKKRVRARRPTNLTQLHQLCQEEWAKIHPTYCGKLV
EGYPKRLTQVKQFKGNATKY
>Tc1-15_Xt_tp#DNA/TcMar-Tc1 298-1323 [Xenopus (silurana) tropicalis]
MRRSLQPTQMAQVVQLIQDGTSMRAVARRFAVSVSVVSRAWRRYQETGQYIRRRGGGRRRATTQQQDRYLRLCARRNRRS
TARALQNDLQRATNVHVSAQTVRNRLHEGGMRARRPQVGVVLTAQHRAGRLAFAREHQDWQIRHWRPVLFTDESRFTLST
CDRRDRVWRRRGERSAACNILQHDRFGSGSVMVWGGISLGGRTALHVLARGSLTAIRYRDEILRPLVRPYAGAVGPGFLL
MQDNARPHVAGVCQQFLQDEGIDAMDWPARSPDLNPIEHIWDIMSRSIHQRHVAPQTVQELVDALVQVWEEIPQETIRHL
IRSMPRRCREVIQARGGHTHY
>Mariner-3_ACar#DNA/TcMar-Tc2 944-2212  [Anolis carolinensis]
MSVQKRLSYRIPFKLEVIKYAKEHGNRAAERHFGPPPTEKMIREWRKQEDQLQKADKSKHTFRGRTAKWPQIDVEMKEWI
TRHRNNGFSVSTKMIIYEAKRLAAEKGIEEFTGSPSWCYRFMRRCGLAMRTKTRIAQKMPKEYESKIVSFHKYVLDARKR
NGYEIGQIGNMDEVPLTFDVPSNRTVDVRGAKTITVKTSGHEKTHYTVVLSCCADGTKLPPMLIFKRKNMPKEAIPKGVI
VHVHDKGWMDENGMKVWVDKVWSKRPGGLLKKPALLVLDQFRAHISEPIKNKFKDVKTHLAVIPGGLTSQLQPLDVSINK
PFKVFMREEWNKWMAAGNHDLTPSGRMKRPTIAQVCEWVKSSWQSVKDETVIKSFKKCGISNALDGSEDNVLYEDSSDSD
STVSEPQSLSSDSSGDFLGFLDD
>Tc2_FR1_tp#DNA/TcMar-Tc2 249-1378 wised with Tc2_FR5 [Takifugu]
SKRKSYSADYKLQVVKYAAENGNRAAERxFGVSEKLVRDWRKAEVTLAAMKKTKKANRRLKAxWPQREEGVRIRVLEQRS
AGRGWTTAQLRLHATIIYKXRLIXDXVGGPSWCYLSSRARTAMCQKLPADFQAKADSFHEFLGTXTDPIINMDTVPLTSD
VPMGRSVAEKGQKSVNIVTTGHEESHFTVVLACCGDGXKTMENHGKPWKHPVRKCSTKRPDGLFGTPKALQLMTACQRTI
LQPLDVSVNRSFPAALRELWEQWMMDGASRQPGGMHHATFLEVIGRIDKAWASVTTETILSGFRKAGIIGTATDDRSDES
DAEEEAVLRLPPELAELLRSDTEDEEFNGFTDVGMRLDCLGNLLGCSLCYSYLNNC
>SMAR14#DNA/TcMar-Tc2 204-1541  [Schmidtea mediterranea]
MSSKRCSYTTGFKLKVIEAAERIGNRGASREYGLSEANVRRWRKNKNTLKECRSSTKASGRGRKLFFPDVEKKLVEYVHE
RRFSGSSISTVEVRLKALELVKEMYPGSIFKASARWCQLFMKRNDISIRRRTSIAQRLPDDVENKLLDYQKYIINLRKRH
EYPISCIGNGDQTPLSFDIPSFQTLDFKGVKSVPIKTTGNEKNRFTVMLGAYGDGKKMPPYVIFKRKSLPKNIHWPAGMI
VKAQENGWMNEELTKDWIKTIWCNDRKDEFRNSRRLLVLDAFRCHRMPCVKEILAKNKTDLVIIPGGMTGQLQVMDVVCN
RPFKQEMRKRWNEWFFSGAPSFTASGNRRKVGLETICKWIQLSWDAVSEAIIIKGFKKCCLSNAMDGSEDDIIWQDDISD
VGNEEDDIDDMENELMFGEVDESIEIENLMESEDENNGLCNEKNIL
>Tc1-13_Xt_tp#DNA/TcMar-Tc1 381-1403 [Xenopus (silurana) tropicalis]
MVRSKELSEAFRKKIVAAYKSGKGFKKISKEFEISHSTVRKIVYKWRTFKTTANMPRSGRPSKFTPRADRKMLKEVSKNP
KMSSRDLQQALATVDVKVHASTIRKRLHNFNLHGRCARRKPLLSKRNIKARLKFARENVDKHQDFWNNVLWTDESKIELF
GHQNRGHVWRKPNTAFQEKNLIPTVKHGGGSVMVWGCFAAAGPGQLTIIESTMNSTVYQRVLEEHVRPSVRKLKLKRNWT
LQHDNDPKHTSKSTKDWLKTKKWRVLEWPSQSPDLNPIEMLWGDLKRAVHARNPSNISQLKEFCIEEWGKLSSDRCQRLV
DGYKKRLTAVISAKGGNTSY
>PrD37D_tp#DNA/TcMar-Tc1 (ITM family) 411-1049 (1 stopcodon) [Philodina roseola]
MKSQDMRNVVMRLFDDGLSSVQIARQLRNVVSERTVRRWENSYKATGGIDLKSPPGRPRIVRTKGLIQKVKQRLSSKSRQ
SARRLAKSLGVSRETMLRLLQDDLNLRAYRITTQPKLTEDHKKRRVSFAYWVRKELRKRDHGQILFTDEKYFSLEGVFNR
QNERVYAVSRDDADQQGGINQTSKYPKRIMIWLGASENGLTSPIIFQPGETLxHENYINVVLPHARAEGERLLGTDFIYQ
QDNATPHVHRKSLTWCAENFSNFIDNERWPPNSPDLNVLDYYVWDAVTTNMQWDKVNDYHSLTEEIKRGIRRVPLEDVCR
SVQSWSKRILTILKTKGEYIK
>PARISa_DRh_tp#DNA/TcMar-Tc1 3-1028  [Drosophila rhopaloa]
MPGKRTDANLIQLVYYNLSKGKTVKELANMYNIKLRTVYNIKNRAEKECRLELHSSNGRPKKLSRRDCAKLLKTIKNKPQ
RSLRRIASDNKTVSHETVRKVKNRHMYLPHVARTKPFLTAVDTENRLRFGLLNSNKSPEYWKDVIFCDETKIMMYYHDGA
AKNWKPNTAHQANNIVPKVKIGKLSVMVWGCISSKGVGELRIFNDIMTKEFYLDILQIELTRSAQKFGFVDPENRSKLKY
KLYQSDNPEHKSHDSRSWTLYNCRKVIDTPAQSPDLNPIENLWALLKKKVAKRRPTSKPALIKCINEEWQKIPDYYDVNK
LISSMPRRLRAVVEANGGHGKY
>Tc1-1_TCa#DNA/TcMar-Tc1 304-1317  [Tribolium castaneum]
MPTGTPIGKELKERVIDAFLNNEKQADIARRFQLPRYSVSKIIIRYNERGHLNNNPKSGRPRKTTINMDRRIKRISENDP
WKSASKIIAEIPEVGVSTRTIQRRLVAAKLFSRRPAKKPLISERNRRARLQFAREHLNWTVQDWRKVLFSDETRYKLFNS
DGMKRVRRPINTRFNPKYVTPTVKHGHGSVFLWGCFSWNGVGPLSFIEGNMDRFIYRDILQDVMLPYAEWEMPLRFIFQQ
DNDPKHTSALVSEWFQNNNIHVLQWPAQSPDLNPIENLWEEVERRIRIQRFPNKQSLIDKIKEVWSNLDENVIQKLISSM
PRRCQKIILNNGYAINY
>Tc1-11_Xt_tp#DNA/TcMar-Tc1 395-1414 [Xenopus (silurana) tropicalis]
MVHRELPKHQRDLIVKRYQSGEGYKRISKALDIPWNTVKTVIIKWRKYGTTVTLPRTGRPSKIDEKTRRKLVREATKRPT
ATLKELQEYLASTGCVVHVTTISRILHMSGLWGRVARRKPFLTKKNIQARLHFAKTHLKSPKSMWEKVLWSDETKVELFG
HNSKKYVWRKNNTAHHQKNTIPTVKHGGGSIMLWGCFSSAGTGALVKIEGIMNSSKYQSILAQNLQASARKLNMRRNFIF
QHDNDPKHTSKSTKEWLHRKKIKVLEWPSQSPDLNPIENLWGDLKRAVHRRCPRNLTDLECFCKEEWANLAKSKCAMLID
SYPKRLSAVIKSKGASTKY
>Tc1-3_Xt_tp#DNA/TcMar-Tc1 366-1388 Tc1-3_FR in Fugu 82% identical. [Xenopus (silurana) tropicalis]
MGKTKELSKDVRDKIVDLHKAGMGYKTISKKLGEKVTTVGAIVRKWKEHKMTINRPRSGAPRKISPRGVSMILRKVKKHP
RTTREELVNDLKLAGTTVTKKTIGNTLHRNGLKSCRARKVPLLKKAHVQARLKFANEHLNDSVSDWEKVLWSDETKIELF
GINSTRCVWRKKNAAYDPQNTVPTVKHGGGNILLWGCFSAKGTGQLIRINGKMDGAMYREILNDNLLPSARKLKMGRGWV
FQHDNDPKHTAKATKEWLKKKHIKVMEWPSQSPDLNPIENLWRELKLRVAQRQPRNLRDLEMICKEEWTNIPPKMCANLV
INYKKRLTSVLANKGFSTKY
>MarsTigger6_tp#DNA/TcMar-Tigger 254-1936 [Metatheria]
MDKRKNTSDGNTASAKKKRLVITLEQKFDVIERHERGHSNSKIGRDVGMPESTVRNIIKHAGEIKEKGKVASAFCGLQTT
TRNRSVTMIEMERLLAVWIEDCNXKRIPLSRAAIQTKASSLFKAVKENGNEVDSEETFTASVGWFDRFKNRVQLHNVKIT
GEAASADEDAAAKYPDVLKKIIEEGGYTDQQIFNVDETGLFWKRMPSRTYISKKEKTQPGFKVSKDRLTLLLGGNAEGDF
KLKPMLVYRSQNPRALRGYNHRSLPVLWRSNKKAWVTKAVFEDWFSSYFSPAVEKYCKDNNIAFKALLILDNAPGHPTTL
GSLCENVKVIFLPPNTTSLLQPTDQGTITTFKAYYLRKIFEQAIAKTTGDNAISLTDFWKIFNVKDAVENIHHAWQQITA
SNMREVWKRILPHCANSNFEGFPSIKQTVIEEITNIGRKLGFDELENDDVRELLDSHSEELTNDDPLHLDQRRAFEETDN
DAGEADNVQMKEFTLKEFEDIFQAVEVMKQKIMDADPNVNRSMQIRRDVDKALCTYQRMYEDLKKEKTVQSTLLKYFKRQ
>Zator-1_HM#DNA/Zator 791-3163 [Hydra magnipapillata]
MSSEKEQLYKSIYEGCLKAFTNKPKQKSQEETNKIWSEIKAKSKTLLDINVEVEKKLKELKQIELRNKVGILSYWTKLQN
YTPKKLVIESKITFDDLTDATPSITNSEDSEKGLQENSNSLKVLKRPAPKQDQLKNEIFILQKDIAYFTEKRNCNLLSQE
DHHILRQKQKLLIEKNRDLVLRQKATERQTATRLKRKKAIEALDPDIRKKLCGIKNAVSKGRPLACDQDSLIKTIVDIAL
KGSASDDRRRTEIVRTVKTLDDLVEELKNHGYNLSRSGVYLRLLPSRSLSTEGKRHVKTAPVRLIRAQNSEHKYHADTKF
AKSSISALEELAAVLGPKEVTFLSQDDKARVPIGLTAANKQAPIMMHMEYKVTLADHDFVIAPQHKLIPSVIAAIEIKKD
CMEKQAVTYSGPTYIAIRSAKHDSSTALSHLEDINRINHLPAFKSSLFTEDEVSKPVMIKTVDGGPDENPRYEKTIHCAK
TYFKEHDLDGMFVATNAPGRSAFNRVERRMAPLSHDLAGIILPFNHFGSHLNSRGETTDKLMEKANFAKAGEVLAQIWSS
TVIDGFETIAEYREPNSENRVQLKQFGAEWDAKHVKESQYLLQIVKCNDQNCCGHRRSSLFHLIPTGFLPPPISLFQGEN
GLECNNTKNNFASLFLNLSLSKTIFPKTITKKFPKGLPYDYSCPSIQSSLPKRICTNCSLYFATIKSMKQHKTVCSSIGL
SNEIQKVKPHRLVAQRLSELMCVFLNSDKETIEWHDQDDVDTSDLNWPSIIIEEHGTPILEGQSPIWEQI
>Zator-1_CP#DNA/Zator 442-4330 via genewise with Zator-2_HM, 3 introns (1069:1126, 1673:3054, 3719:3783) [Culex pipiens]
MDHNEMFGDLFKAFVKAYPEKKKSACQAEAILFWNQLKTSEPKDKLPELVRSKIQQLEALALGRQGALMKFWGKAASAAS
PTPAVSQSRASPSEHGASGSGQSSRKGEAKIAQPSSASCLKRPAPVQQKISEELNEVTAQVLRMKERESAGLMTEXPEGE
FKQLKLLTGQRNKLEKIVESKISQQERQKKRRVVEKSAKERLLEEIPEAAKFLSVRSNIGRPRLEEQQTDLLKAICDIAI
YGSAAQDKRQLEAIRSIHTLDELKDALFHQGFKLSRSATYLRLLPRRSNTVEGERHVNPVPVKLQKATNTKHHDHSDGRF
CTSTIWSLEELSSLLGPEEVAFLSQDDKARVVIGLTAANKQSPFLMHIEYRVKLPDHNWVVAQRHKLIPSVITAGIIIKK
NGLGKPEAVGYSGPTYVGIRSGKHSSSTAYSHALDFKRLTELEEFAPILRHDGIIKPVVVIVVDGGPDENPRYRKVIQVA
IHHFLEHNLDAIFIATNAPGRSAFNRVERRMSPLNRELAGLILPHDNYGSHLDSQMRTTDEHLERQNFKFAGKTLAEVWG
GLIIDGYPTVAEFIEPEASEVDPESLECRDQCWFSNHVRTSQYMLQIVKCDNRSCCSPLRSSLSTVLPGRFLPPPIPFIH
SSDVLKAAGKDDHQHFPSLFVAISLDVSKILPKSYLGFKKIPYDLFCPSQTNLVNDRICTTCGLYHASLVMLKEHKKEHK
VTAATKKIRSKHVVTRRRNELLVTTADGGDLDWLDSDTVDLTGIPMDWAEGVENLNDSHPIIDIEKHLLNPWGED
>7505077_Cel_pol#LINE/CR1 gi|7505077|pir||T23191  hypothetical protein K01G12.1 - [Caenorhabditis elegans]
MIANNIDILLLCETFLNDAFTENICSNSNISCFRADRPKSHPKKGGGGTAVFFKKELNLTPVSLQNIVYENHYCDLLVVE
HNPSKVRFVLVYRPPSTTIQQTSELFKYISLMIENPLLHHVILGDFNLPSIRWVPDTIPFQSKIIADWMTSHNLKQLVYS
PTRTSYMGTQNFLDLIFTDAPEYVHNVSASSPFMSSDHLSVEFEMPLNQKRAKPTPLTEKKLHFRKCDLMKLNAHFFSFN
WPKQLSFFSTPDSKLAHFLRIFNELIADYTPLMSHPPRVRNVPVTGKKLYRTLRKRHPKSLSTNLKKRVKLRLLSIRKNI
KKHESKIIESKNTRSLFALVRSRISQSSSLTHLSVNNSIMRDNTDMANEFAKIFSKSFEKSPPDFPALPALEPVITPIDT
HPLTLSNLIKKLKPKLGYSRDNINFFILKKCADSISLPLSLIFSEFLSTKTFPVCWKESTVVPIFKKGNASDPENYRPIS
LTHPLSRLFEKLVLQSIKKTCANKLSKIQFGFLNNRSCTLAHLNSSTFCHSILSHPRKFLDIVLFDFRKAFDTVPHNLLI
LKLKNFGIDDNLCDWFQSFISNRTSTVKVSNSMSTCKYSISSGVLQGTVTGPFLFLIYINDLLEQFPADVHVTAFADDVK
ISSENIESIKKSISIIEQWCDIWKLKLAENKTQVLHIGKLNPKTDYLVNGHKISVCSKARDLGIWVDDKLAFDKHIHLIV
NSAIFKSRQILKTFRSTNALFYFKLFNIYVRPILEFGCEVFNPKLKSLSEKLEKPQRYFSRLVFKRCKISYESYADRLIQ
VNQTTLKHHRLLLIAKTYHDIVTGTRHFPEFTKYLKKSKTPRFPYQLSPNGPFINNIFLHKYLSFWNKLAKLFNKPVSGE
TFTKRVSALPLDTMI
>CR1-1_CM_pol#LINE/CR1 1295-4004 via tfasty with PlatCR1_pol, 2 frameshifts. [Callorhinchus milii]
DLVAITETWLQGDQGWELNILGFSTYRKDRQCGKRGGGGGVALLIKDEIKTVERKDLNQKISDVESVWVEVRNNKGQKTL
VGVVYRPPNSSYSIGQGINQEIRGACSKGNTLIVGDFNLHIDWENQIGKSKLEDEFIECIRDSFLEQYAEEPTREQAILD
LVLCNETGLISNLEIKAPLGQSDHNMMEFNIKLESDIVKSEARVLNLNRANFAGMREDLAKINWETKLKDLTVDQQWQTF
KEIVQNSQRAHIPLRNKNAMGKVVQPWLTRAVRESIKSKEKAYKTAKMSSKPEDWENFREQQRRTKKLIKREKIDYESKL
AKNIKTDSKSFYKYIKRKRLARVNVGPLQAETGEIIIGDKDMAESLNKYFATVFTLEDTENIPKIEDQEDNVSEQLREIN
ISKEMVLGKLSGLKTDKSPGPDGLHPRVLKEVATEIVDGLSLIFQNSLDSGTVPIDWKIANVTPLFKKGGREKMGNYRPV
SLTSVGGKILESLIKDVVMGFLEDHNKIRQSQHGFTKGKSCLTNLLEFFEDVSSRLDRGEPVDVVYLDFKKAFDKVPHKR
LLHKVKAHGINGNILAWIEEWLTGRKQRVGINGSFSNWQDVTSGVPQGSVLGPQLFTIYINDLDEDIECNVSKFADDTKL
GGRVSSEDDAKRLQRDIDRPGEWASRWQMEFNVGKCEVIHLGRKNRKTDYFLEGERLDSVSVQRDLGVLVHQSQKVSLQV
QQATKKANGMLAFIAKGLEYKSREVLLQLYRALVRPHLEYCVQFWSPYLKKDILALEGVQRRFTRLVPGMRGLTYEDRLN
KLGLYSLEYRRIRGDLIETYKILKGLDKVDTEGLFPLVGESITRGHSLKIKGQPFRTELRKHFFTQRVVNLWNSLPQKAV
DAQSLNIFKAETDRFLKNRGIRGY
>17506149_Cel_pol#LINE/CR1 gi|17506149|ref|NP_493488.1|  predicted CDS, reverse transcriptase family member (1O840) [Caenorhabditis elegans]
MRSYRYFLKPNETKTTTSKNLSSIRKLIRKRMKCLKGIPPLIHNNSTILDDSEKCSIFSQTFMDNFSSPQVSTSPQQSVV
SPSSANNPNACKYLFEPYIVKQILRKLTPKIGFSLNYVNFYILKHCATPLALPLSLIFTQSFEEAILPDAWKHATVLPIP
KKGNPAIPSNYRPISLTDHIARVMEKVICSRIRIDYRHLISPHQHGFLDYRSCTTSLTRSTSLYHEILKQHNSLDVLFFD
FSKAFDQVSHIKLIEKLEHIGIHSNYTRWFESFLTNRSFSLKVNSITSTQKYSVPSGVPQGTVSGPLLFILFINDLLHSI
PPTVHFSCFADDIKLFGHSPSELQAAIDLIANWSKDNQLPLAPAKTALLQLGKKNSKNVYTVDNITVSPTNSVRDLGLYT
DSKLTFKPHINRATSLALLRAKQILKCFSSSSPKFYINMYKTYVSPILEYGSVIYSPPPTSNLSSTLESLLKYFSKRVLQ
RCNFKYKIKNAPQTHNAFSKSYENRLKILGISSARSLRLRAQLLLLYKILTGAAHFPKSSDFVTLANSSRRPMLIKIKNP
KCRSFFSQVVPIWNSIVRNSSFFLSPSQFLLLLDCQISKF
>Zator-1_AA#DNA/Zator 1238-3641 via genewise with Zator-2_HM#DNA/Zator, 1 intron (2639:2696) [Aedes aegypti]
MDRAALYKKLYSSYEKANHLKPKRQIQQEVNEIWCKAKSDADTFERNINEAIDAAALKLSRNKAGLAKFWTLTQKAAPQE
LSQCSSQSLSKPEVCIENVKPTLPSPEPSTSSGLAPKRPAPAQERMRTQLADINQELLLLVGRKERDLLTEDDRQRMHRL
RENKKVLETDLKKKIGDQIRSQKRRDDLKQSFKELSEKIPEAKSILNLQATAGRPRVEDKQPEVLKAIVEIALYGSAAHD
RRQDESYRSVRTLSDLTEAVNRHGFEISRSAMYLRLIPKRANSSEGLRHVKTVPVKLIKAQNDKHTQHQDGRFCTAAIHM
LEKLAAMLGPREVFFVSQDDKARVPLGLTAATKQSPMVMHVDYKVSLPDHDFVVAKEHKLIPSVYAAVKIQPDAMGKAEA
VGYSGPTYIAIRSAKHCSSTANSHGSDYTRLLDLHEFEDFAKNDGEVKPVHVIVSDGGPDENPRYQKVIKVAIHHFIQHN
LDAIFLATNAPGRSAYNRVERRMAPLSKQLAGLILEHEFYGSHLDSQMRTVDLELEKRNFSHAGQTLASLWSELQLDDYP
VYAEYVESERSELSDLIDKDAGWFANHVRSSQYFLQVVKCHDKNCCKPFRSSLLTVLQNRFIPPPIPLYQTDLGLKAPNP
ANIGSKNFASLFVINSLDLSKILPNAIQNENIAFDTYCPSVFKRIKERTCKTCKLYFASNVIQKAHCQTHKGTSVSKKIR
PKRVVCRRAEEVLVVTVDDEKEWIEIDDVEDSPIPNEDLSEEACPILALDTRMEIIWTTETD
>SMAR16#DNA/TcMar-Tigger 413-2257 via tfasty with Tigger5_tp, 1 stopcodon.  [Schmidtea mediterranea]
FIICALIFLFYNLNRFFFNLPxYGEKKYQRKAISLERKIEILDSLQKGERICEISKHFNLGESTVRAIKKNEIAIRKSII
DGTKLSSKLSSYTRDNILEKTEQALRIFIEDLTKKRIPISGYILQEKARKFYEEIEKSESSTFSSSKENRKFIASNGWLS
GFLKRNAFHNLKIRGDVASANQEEAKKFPEKLIKIIEDGGYCPHQVFNADETGLFWKRMPARTYIAKSEKKASGFKASKD
RISLLLCSNASGDRILKPLVINKFNRPRALKSKDLKQLPVNWMANSKAWVTTALFTEWFKNCFLPEVEIYLRQKGLDFKV
LLILDNAPGHVNIEHNNVQILFIPPNTTSLIQPLDQGIIATFKKYYIKSTYESILNKIENETLPLSEIWKKFTILDCINH
VANAINQIRPMTLNLCWKAIWPECVTGNGTIAEISDEIIALAHSFGGEGFDTFNQNDIEELLTDNALNDDEVIALTMDAD
DELENNDNVEEENPVPFTEKIIREGLQLCNNLENFFILHDTNYERALKFQRDLNNCISGYKELHKQLVTESRKSKQTLIT
DFAVHKSVSKQKRGEIDADFNETESLGSSSENESDFEPRFRKLARRLSFSDDSCN
>SMAR15#DNA/TcMar-Tigger 318-2070 via tfasty with Tigger10_tp, 2 frameshifts and 2 stopcodons.  [Schmidtea mediterranea]
MEKERLTKKRKKIVLTIKQKLTLIERFEKGESTSKLSEEYGIGIQTVRDIVKQKNKLEAFARDCDSSAGPSKRKSMKTST
FEDLDAAMLIWFNQKRAEGIPISGQMCIEAAKTFHENLGIKESFNASSGWMTRFKQRHGIRQLTIQGERLSSNAEAADEF
CVEFQEYLQRENLQPDQIYNADETGLYWKCLPTKTLASMKEKSAPGHKSSKERITVMCCGNASGTHKMKLLVIGKAKKPR
SFKGTEIKNLPVDYYSQKEAWMDREIFEDWFKKKWVPEVQSFLKNKGLPQKAVLLLDNAPSHPHESILKTNDGLMISNFF
HPNVTSLIQPMDQGVISSMKRLYRQKLLKTLVEEDGxSDQFLEKMTVLDAIHGIAQSWSKVKPVTLLRSWRKILPDIETD
LMDSEENEENFVSEMCGLLENLNFFEDVDKENIEEWLNHDLNDPGFERMDDPDIVSLVTQKEENDSNTTSEEDTSGYVSH
ETAxIVFETLLDYAEQRGTEYNNVIALRIFRSEIRNSLKKSQKQMKITDFFNLCTYKSIIFYIYFYVRIYDKILYFYLFV
CVFLINNEYKNSVLKICVVYMILYI
>Tigger5_tp#DNA/TcMar-Tigger 125-2068 [Primates]
RYAVRYSLAMLGSGSEPQLPVSHAITRVNNRYSTVYCVASVFWILCFVFSHPIMSTKCPSVSPASGEKKRKAITLEMKLK
IIAQHEGGKPVMAIARELGLSQSTISTILKDKKRISDAVKSSASVKSTVITKKRAGPIDDMEKLLVTWMEDQIQKXIPLS
LLTIQAKARSLFDTLKERADDPTYTQMFIASHGWFQRFKRRHNFHNVKVSGEAASADTEGAKAFKEELHRIIVDEKYLPE
QIFNVNETSLFWKRMPEHTYIHQESKTMPGFKAFKDRVMLLLGGNVAGFKLKPFLIYHSENPRAFKNVSKHTLPIYYHHN
KKAWMTSALFEDWFLNCFIPQAREYCRQNNIPFKILLILDNAPGHPQHIGDMHPDVKVVYLPPNTTALIQPMDQGAIAAF
KAYYLRQTFAQAVEATESGRTLREFWKGFNILNAIRNIAAAWEEVTQQCMNGIWKKVLKTYVNTFKGFNKDSAVDEIVSN
KILVLGKQLELDIDEEDIHELVGIEAEELSNEELIELEEERSKEVEAEEEEVIPEAPRKFTAKKLAEAFATISSGVRXLE
EMDVNYERFARADRQIQDALACYREIYNEKKKQTVQSKLDIFLKNTMPAKPSTSVDAPVPSTSYSQASSEEREIDDPVAV
ASPSSSN
>CASBIG#DNA/Tourist 200-700 [Oryza sativa]
NTIFYLVTILEYSLDRKALSSSPHHPFPQSSRGMGSSKQTKSTGMAGLMVCGASSRAQPSYVPGRASETELARPRGRSEL
PPWPSQARAAGNLELLFPLIFFSSNWIASYSYPSEFLLSCFVCIRKSSCLLLDYLGLTRRKRKMRSEWMLFFLCFSFVIS
SKGIFP
>Tigger10_tp#DNA/TcMar-Tigger 97-1841 [Mammalia]
MDSKLPLVKGKGQKHKKVVLTLKEKMDICTRLEKGEHRKMLMDQYNIGSSTLYDIKAQKGQLFKFFADSESSKAVEQXHI
THMPKLEHLDRVLYEWFSVKRSEGAPISGPVLIEKAKDFYEQMQLTEPCVFSEGWLWRFKVRHGIRRLDIAGEKQSANHE
AAEXFCGFFRELISEHSLSPEQFYNADETGLFWRCLPXSTLAGASESSAPGFKQNKDRLTVLACANAAGSHKIKPLVTGK
FHHPRAFKGVTHLPVAYRAQANAWMDKEIFSDWFYHLFVPSVKDHFRTIGLPEDSKAILLLDNCRAHPEEAGLVSGNIFT
IFLPXSVTSLIQPMDQGVIQNMKCYYRRDFMRKLIHHAGTIQDFQSHYNIKDAIFNVACAWNSVXSQTLRRAWRKLWPGV
MSAEVSSSDDEEFVGFGIXPLQNTLAQILEMVRDTPPSHPXNKLSASEIEEWVXADKEVPVVHCVSDAEXTDNVLNXADK
SKDTDSNSEEDDFLEGEKTTWEKAASAFDSXINFAERQPCYTAQEVMQLHXLHSTFMRKRQMTKKQADIRDFFKKASSRA
TPGVSTHSALCPTPSTSAXTXT
>R4-1_BM_pol#LINE/Dong-R4 1-2541 [Bombyx mori]
AQQLADRIDLLKQKVAAWSKRVRRYSGRVQRYRQNRLFVSDQKFYRSLEHPSVSAATERPAGQEMVTFWRNLWSRPVEHV
EGSWMQVIEESCAGKPPMSPVTISKGDIKAAVCSSSHWKSPGCDGLQLYWLKSFRACHETLARQFQEALDTKVLPDFLTT
GITHLIPKSESTADPAQYRPITCLPTTYKTLTSVLETKISHHIDSCRVLSGAQNGCRRGSRGTKELLLIDAVAGQQVKRN
RRNFSAAWIDYKKAFDSVPHTWLKRVLELYKIDDTVRDFLGACMGQWSTMLSLSGVRLSAVEDRIKVNRGIFQGDCLSPL
WFCLALNPLSSLLEASRTGFQFRRGGLKVSHLFYMDDLKLYAPHAAGLRRLLDITCDFSSRIRMRLGVDKCAVLHVERGS
IVSSDRLPVSDGINLRALSEGETYRYLGMSQNLGIDVAVVKQAACDVFYERLTKVCKSLLSGVNKTRAFNGWAMPVLLYT
FGVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLLSAKVMHNSGVCSLREYFLSRADSVMHREVME
CDKGLTPLALARDGWQSPAVLSTSDREAIWKGKELHGRFFQALHEPHVDKEASVHWLRFGDLFGETEGFVCAIQDQVIRT
NNYRKHILRDGTADICRLCRRPGESLRHVTSGCSMLANTEYLHRHNQAARILHQELALKYGLIEQRLPYYKYQPDAVLEN
DRAKLYWDRPIITDRTILANKPDIVLMDQTESRVFLVDITIPYDENLVRAEADKKTKYLDLAHEVTDMWRVVSTEIIPVV
VSVNGLVPKSLSKHLERLGLNKKSVVAQMQKAVLLDNARIVRRFLSQ
>Cre-1_BM_pol#LINE/CRE-II 894-3770 [Bombyx mori]
MSHSQPLPPNPNTFPAGLTQCDECLRYFKGNRGLKIHTGRIHKAESVPNTLCPGSSRDNRVSVVPLWKKLSLYKNNSPVV
KRVPRGARVMVAEELKKNIDQVLHDNNVTSWEDLLSFAYRILHVDKQSNNSHSLTKKIKDNCKNNSNKTLLDDGVNYDKQ
QRPFNKVAKIEGKVSDGDLKGASQLLFSSDSLAPNNADTLLALKSKHPAPLTPVSVPPPQSSTTLPRVSLDDVLTTITSF
KNGSAGGLDGLSPQHFKDLINVSAGDVGRSLLKSIVSLVNLMLAGSVPDSIADILYGANLCALMKRDGGIRPIAVGGTLR
RIVSKLCCKEVLPILSGMFRPIQLGVGTKGGCEAAVHAARTFLKGGGAEVLVKVDLKNAFNCIDRNAFLKEVKEHIPSIY
PYLYQCYGNPSKLVYKENLVESATGCQQGDPLGPAIFSLGIHPVLRELKSSLNLWYLDDGTLGGDISTVLKDLEYLKSAL
ASLGLELNFAKCELFINASCCSVPVSDVFAKFNTAAPNIKVVDENSLMLLGAPILDGSIDAYIDEQIDKFSQCSNNLFEI
NSHMALFIIRHCLFVPKFTYVLRCSFLWKHNNKLNSLDEMIKGVLCKIINCNLGDLSWEQCVLPVRFGGIGVRKASAVAL
PAFLASAHASCLIVGNVLNPCMGSVEIVGVSEAGSAWQSLCQADFPTLPHLQRLWDTPLCQRIQQRLLQSYDNSVDIARF
RAVTEKESSYWLQAYPSSNTGTLLDNNALSLAIGLRLGAHINVPHFCVCGEYVNELGHHGLSCQKSAGRIPRHASLNDMI
RRALTTVNVPAVLEPIGILRSDGKRPDGVTLIPWSVGRCLVWDATCVDTVAPCHLDGTSSRPGSAAASAEITKKRKYSGL
GSSYSFLPFAVETMGPWGPEAKXFLTEISKRLKEVTHDAKAGWYFAQRVSLAVQRGNVASILGTVPPSSALEDLFYCVG
>R4_AL_pol#LINE/Dong-R4 gi|903661|gb|AAA97394.1| reverse transcriptase coding region; start site of translation has not been determined [Ascaris lumbricoides]
EDHNPKGWTQSPRHVWCWLSWSVVGRIAMPCSTNSFFERGTPEPHREPISGTDSSESLGMGTHRSPRLNDDEVINGPKGH
ESDPVHVVRAPRTLHPRRLELPIGVNNLGEASQLRQDSAIAEEAQLESTENHDGRRPPLRGGRKLWSEKEIATLRRLCEA
YGNRQVCWKEVQRKFADFHEERTVAALATKWGALKRPRAPMVGAPPTPDHDPERGPAGEGDGGTTSQENVPTDDPIPANG
PTEGKESDVRPAVACRCTEPEEQLMESDVRPPAVVRLADPEQHTMKSGVKPVALDGSADLEERPKEKDIEQMGVDFEGEP
RFRAFRKAFYGYFRWAVNSFDREPVKRVRRDCPKVFYAYADYLIATGSSKALGPNQSRIGRLNGLVYAAARTIHQFWREE
VGHRQQGEKGWYTKTKATREDLQMLISMMESELARRKEKRKPGAKELENIHKLVARLGTRSTSGIVRRLEMTRQRLKLLE
DRISLHEQEKRRKRLRKQFAETPSLKLLTKGAKDRGDTMVTMKSVMDFWRPIIGRRVTSNPDQLQVLRDWRDEQKKAYPA
DLDLEKADLEEKYEGAIRRIQPWKAPGPDGLHAHWWKALPSAKRLLGELVVDWLTTGKVTTGWMCRGRTILIPKKGDRGD
PSNYRPITCLNTCYKVLTSVMNSVILSHLSRGEALPMNQRAMRKREWGCTHAMVLDRAMVMDAMAQKKHSLSVAWLDYRK
AYDSVSHEYIRWAINSVNIPRSVQLTLKRLMSDWETRFESTQCRPKLRSDKMKVLNGIFQGDSLSPTLFVLCIAPISYAL
NKGVGQCQSSSGWSAGYGFEIGHQFYMDDLKLYARTPAMLDSQIQVVSEVSEAMGLHLNLSKCAKAHYAPHGAGGAQEAV
EGAEGSRKGEIPILGLRSTYKYLGVEQRLLPMEVALKEFEDKFMDRAETIFASELTWGQMATAYNTIAIAGLRYVYSNTN
GASPKLLEALKRAATLDTRIRDLLRRHKCRFRNSFVERLYIPRECGGYGLKSVEDTLRESILATWSYIATNPHLAGQQYF
FERLAARGKRTPMADGVKILLDLGVEPQVDLKRRTVTVDGIVFEDPTKLHRYLVGKLLKARTEARIRRWKEASLAGRLVN
DTSIDMRLSCLWMKKGFVSARNLRDALAVQEGSLLTRACPALKGKGGQEVCRCCHAAPETAEHITSACRYWLPSLYVERH
DSVARNLYYVICCRYGITPVHYSNRVSPLSENSQCRVLWNMDMQTRTPMKHRKPDIVVFDLKREKILMFEVSIAHASGLL
KQREIKINRYTVNSEELPDETITPYPPGPNLAADLAATYGWQVEFAPVVV
>TRE3A_pol#LINE/DRE 1423-5127  (TDD3 similar, but with frame-shifts) [Dictyostelium discoideum]
MVVIKINQWNVRGWGTDTSFKNKTDFIKSQSPPNSLALTIVNELNADATQAHQLFPGSIISATNRGNGIGILNHNNQNIK
LSPIFIIEGRLIISDILIKDTTTRILAIYAPAQPDKRKTLASTLNKHFNNQYHNLTSNPKKNIDIIAGDFNCLDFNDNHT
SNDDQGNLTTQSPDEMATVIEAIRISNNLMDMDQLNKRPTFSRTIHNTNNNLTRILERRLDRIYLNNSIINYSQLYLRNL
IPPKINDIPLSDHNFLSTTFTLPNIQMNKRRWRLKKSSILSSIMLKKIDFLLNDYSRELSSNHNSISFSQLNSLLNKIKQ
LYTEFQKQNDYNNKANIKNLISLLETEFKDQAFATLSAINESKKREEQLKQELNNYCEETSLKYISARIKKRHNDFTINA
VKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDPPSHYEMLENWTVTRDSTWDNLENEFTSQEILEVIKQLNPHKSPGPD
GIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPI
LTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLT
KSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSNHREKFQSFADDSASMVPDSQQ
LELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKMPEILNTIRSSLVLWKTTD
STIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNNKNASGFQVINLMRTKRARYPLKVGGWNIWNIE
LRQLAQKLWIINQFILALETKQTNSSHHKSWEYQIQKNKFTSRYLKENLDEWNKIRIKKAIFNNNLTSIKNENGQPLSLA
EWYTTIQDQNPTIPKTEFQSSLNLRGYSYNQLFNNILKIKDPKTRDTMFRFHARCLPINYLHNKQCPLCKEDMSKDPYGH
LFFSCKKTKQFIKINKLKNFIYITTGKGKNWHHTRIRQNNNFINRITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKA
IDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPK
ILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI
>Rex6_OL_pol#LINE/Dong-R4 Genomic sequence AB021490 43684-46911 via tfasty with Dong_FR_pol, 2 frameshifts.  Rex6 is probably identical to Dong2_FR in RepBase [Oryzias latipes]
MRDNEPHVMPAQTSPGQTRSASGAEGPEHPDGKWATGTRRKWTRCENKVLLECYYSSNPTQRGYMQRMWNEWMLRNPQSR
LTAKQLVAQRTNNHKRQLLSQLEIEAIQYNATGEPEQVREEVIPHSHPEIGYTAPTTTIPLSEAATDLKDKIMSTMKTRQ
PYLGSDVPPESLLETVNEALRAIPTTTITETNELVYTSAAVILEMLGYKSNHGRKQYPPWKQRLEAKIKATRKDVSRLTE
AQRGTMRKQVPKRYSQMPIPEALETAKQKLLALSSRLKRYTRDNEARRINRLFATQPAKVYAQWQGQNSRADPPRLETEQ
YWKSIWEKETAHNSNAQWLVSLKKEHSNLPEQNPVTITVADIQERVSGMKNWTAPGPDMIHAYWLKKLTALHERLAAQIN
QLLRDGTHPEWLTEGRTILIQKDPLKGAVPSNYQPITCLSTTWKLMSGIIATKINRYMDQFMSNTQKGIGRDSRGAKHQL
LVDRTVAQDCKSRHTNLCTAWIDYKKAYDSMPHTWITECLELYNINRTLRAFIGNSMKLWKTTLEANGKPLAQVSIKFGI
YQGDALSPLLFCIGLNPLSQIINKTGYGYRLRNGANISHLLYMDDIKLYAKSERDIDSLIHTTRIYSTDIGMSFGLEKCS
RMVTKRGKVVHTGGVSLPEGTIADIEDSYKYLGIPQANGNLEQATRKAATAKYLQRVRQVLRSQLNGKNKARAINSYALP
VIRYPAGIIRWPKEEIQTTDVKTRKLLTMHGGFHPKSSTLRLYASRKEGGRGLVSVEATIQDETSKMHEYIKLKAPTDSV
LSECLRQWRAEDTVLEDRSSWEDKPLHGMYHRTITEVADIKKSYQWLERAGLQDSTEALILAAQEQALSTRAIEAQIYHT
RQDPRCRLCKEAPETIQNITAGCKMLAGKAYMERHNQVAGIIYRNMCAEYGLETPRSKWETPPKVVENERAKILWDFQIQ
TDRMVMANQPDIVVVDKEQRKAVVVDVAVPSDGNIRKKEHEKLEKYQGLREELEKAWKVKVTVVLVVIGALGAVTPKLEE
WLQQIPGKTSDLSVQKSAVLGTAKILRRTLKLPGLW
>CR1-51_BF_pol#LINE/CR1-Zenon 2-1240 fragment [Branchiostoma floridae]
YINDIVNDLVSQPYLFADDSSLLEIVKNPFDSAAILNSDLSKIHSWACQWLMELNPQKTEEMCISVKRHPIVHPPLYLDN
CVIQSVITHKHIGVILSSNMSWDAHVNHIVSKVSKSVDLFSGLKFRLPRNVLETLYKSYIRPCLEYADVIWHGTTSEQSN
LIERIQYHCSIVVTGAIRGSSYLSCRQELGWETLSDRRHVHRLCLFFKIVNGLTRDYLVEFVPPAISSECTYDLRNKLNL
RSTNLSTNRSLKSFYPYCISHWNNLDPSTRSLNFCQFKTFIFKQFRPAKCKYLSHGPRYPCLLLTRLRIGTCSLNSSLLS
RGLRNSPACSCGCRSETVAHYLLHCPNYNNQRLLLLGKLSRLLGQSFNLFTHSENMHISLLLNGSPSFSYSLNSKILILT
QNFITISKRFIS
>SjR1_pol#LINE/CR1 gi|3702848|gb|AAC62955.1| reverse transcriptase SjR1 [Schistosoma japonicum]
LDFSKAFDKVPHKRLLIKLKSYGVKDPLHSWFASFLEGRQQTVKYNNSLSLPKPITSGVIQGSVLGPLLFIIYINDIINV
IKHGRPYLYADDLKIVYSYTPDVLEDMTLIQKDLDRLTAWSQKWQLPLNHSKCGILHIGNHNPQFTFYLNGSKVQILQST
SDLGIKYSGNLKFTEHASSVVSKTRKLTGFLLKNFFTREAKLTLFKICVRPTLEYCSFIFSSMNNIDRTRIESVQRSFTR
RILGTNSNMNYTARCKTLSLEPLSHRRLRHNLIFFYKIITGISSSAFSPQWNQTPRYDLRNCEATLLINKYQAQQRCKFF
IVLYSKLWNKLPQNIRTLS
>Plat_L3_pol#LINE/CR1 598-3504 [Mammalia]
MDXLSPKVSEIXIDLGGGLNSRIDLGNSSVGDKVTRRKTEGTTHGYLKCLYANARSMGNKQEELEVLAQDRSYDVTGITE
TWWDSTHDWSAGLEGYRLFRKDRQGKKGGGVALYIKDXYTCSEAQETEGGQRVESVWVKAKGEKNKGDVMVGVYYRPPNQ
EEKVDEAFFGQLTKAASGQDLVVMGDFNYPDICWKSNSAGHRSSNRFLDCIGDNFLVQKVEESTRADALLDLILTNGEEL
VEDLKVDGNLGGSDHKMIVFKILREGRREVSKIKKMNFRKANFNRLRALVGRTRWKESLRGKGVQESWLFFKKTVLQAQE
QTIPVXRKDKKGNKMPSWLNPELXRDLKGKWESYKKWKLGQITKEEYKEIARLCRDKIRKAKAGKEMQLARDIKGNKKTF
FNYIRQKRRTRENVAPPVDRKGKLITDDCEKAEAFXFFFTSVFTKKIKCEQLTRASPTWDGRLESQTRIGKETVKEYLKK
PDVFKSAGPDDMHPRVLKELADVIAEPLAIIFENSRRTGEVPEDWKRANVVPIFKKGKKDDPGNYRPVSLTSIPGKILEQ
IIKQSICNHLEEHKILGSNQRGFVKSKSCQTNLISFYDRVTGHVDKGEAIDVIYLDFSKAFDSVPHDILIDKLGKYGLDH
TTVRWVHSWLEGRTQRAVINGSVSTWREISSGVPQGSVLGPVLFNIFIDDLDEGIESMLIKFADDTKLGGVANTLEDRNK
IQSDLDKLEKWSXKNRMKFNRDKCKVVHLGTKNKPHKYRMGKDWLGTSTAEKDLGVIVDXKLNMSQQCSAVIKKANAVLG
CINRSMTCKSREVILPLYSALVRPLLEYRVQFWSPHFKKDVEKLERVQRRATKMIKGMENRSYEERLKELGLFSLEKRRL
RGDLITVFKYMKGFYGEDADQLFSVSTEDRTRGNGLKLKQERFRLDIRKNFLTVGVIKHWNGLPREVVESPSLEIFKKRI
DXHLSWMV
>CR1-6_BF_pol#LINE/CR1-Zenon 1288-4518  [Branchiostoma floridae]
MPVNNQKHFSLCHANVRSLPAHDFTKLHELETIALEEGYDIIALSETWCDSTIPDVDMYLPSYQVPMRRDRNRHGGGVAL
YISNSVPCKRRSDLESDTSEAIWCEVDIGMKLFVCCCYRPPGQSAEERSTFFEHLQQSIDVIIDSGPSDKTTIVLLGDLN
ANSDNAASTIEMFTSENNFDQLISEPTRITDTSSSLLDVLITDSPSLFTECGTNPPLSNCDHSLVYGKMHLKIPRVKTYK
RTVYEFHKADYEGLNSELLLIDWGSIVSENIPDINALTETFMTTLSTTIARFVPSKQVTIRPRDQPWMTCEIRQMLRKKK
RMYRKYKKTNRPEIYNTFKHIRNSCTKLIRKAKHNHRLGLCLDLANPSSNPKKWWSVSKEIFMGKIDRTLPPLVEDEFTI
TDDKTKANVFNCYFASQSNLDTTGASLPLFTTRTDTVIDCIICSPSEVYEILCNLDVNKATGPDGLGNRLLKNVAPSLAN
PLSKLFNISIQHGCFPDIWKCSNVVPVHKKGDKQSKENYRPISLLCCVSKVLERVVHSSLSSYFHQNKLLTDRNAGFALG
DSTVNSLTYLVHKIHQALDQGLETRAVFLDISKAFDKVWHTGLLFKLRQLGVTGSLLAWIESYLNNRRQRVVINGVCSEW
LPINAGVPQGSLLGPLLFLVFINDIVDDLLTDSRLFADDTALLEIITDPVASADRLNRDLTSVSEWAAQWLVTFNPQKTV
LMTFSLKKNKVRHPPLYFKGVQLTEVESHKHLGLHLTRDLSWSLHVSILVTKAMKRINLLKRISCFVPRKTLETLYKAMI
RPLIEYANVAWCGILKKDSDSLESVQVSAAKVCTGALRGTNHSRILTEVGWDTLATRREKHVLIHFYKMASGSAPNYLHE
LVPPLIRDSTPYGLRDDQNYLPIALRTEKYKRSFLPAAVFSWSQLPLSAKTSPSISIFKRELESFFDSPPRHTHYSHGHG
RPAVHLTRLRLDFSQLNSHLFKHHCITSPTCECGNSNETTEHYLLHCELYNSERIHMLHSISRLNLEELLSPDPLNSSDN
TLCTLLTMGSPFLPHSINCNIFDYVFNFIKMTGRFT
>CR1-28_BF_pol#LINE/CR1-Zenon 1-3095 via tfasty with CR1-2_HM_pol, 1 frameshift and 1 stopcodon. [Branchiostoma floridae]
ITETWLGSTVDSEAISLEGFQSPVRRDRNRHGGGVLIFVSDQIAFRRRCDLESLTDESIWLELFPGTFRILFSVYYRPPG
QDSVTVDSFIDSLQTSVFTAAASNADSIIITGDFNAKHSAWWHLDSNSSLGSKLLQASQMLNLSQMITEPTCDLSRSPSL
LDLLFTDTPNLVKSTSVLSPLSGCHHCLCHCELxLLYQTRPYVRTLWDFSKIDYATLVESSTDSKWLDIFYCNSVDAACN
MLIDLISETKTKSVPKRNITIRPRDRPWMTARIRELMRKRDKSHKKAKLCNSPSLWASYRKIRNKLVNEIASAKLNHNTR
VTNSLLNSPTGSKTWWHLVKTIYRCSATTTIPPLKCNDHYICDSSEKASEFNRYFSLQSTIDDTNARLPTFDYLTNARLF
ICETTATEVELYVSELDVSKAYGWDNIDNRFLKIICPYISDKIAYVFNLSICHGIFPEVWKRANVVPIFKKGDPCLVSNY
RPVSLLPTLSKILEKIVYKHLYNHLMSQNLLYSYQSGFIRGDSTVNQLVYISNKILHAFDENKEVRAVYLDFSKAFDKVW
HKGLLFKLQRNGVEGPLLNWIQSYLFGRKQRVTIEGQNSDWSEISAGVPQGSVLGPLLFLIYINDMIEGLDTHSFLFADD
SSLLDVVESPLLSANRLNSDLSKISSWTTMWLMELNPSKTIEMCYSTKAKPPTHPPLFLGSVQIKSVNCHKHIGVHLSST
MTWNTHISKMLANASKKVSVFSKLKFKLPRKVLEIIYKSFIRPLLEYGGVVWHGCTTSDSDLIERMQYECSLTVAGAIRG
SSYSSLLTELGWEKLSDRRHIQTLILFYKIVHGHTRQYLNDLIPPLVSDSSSYDLRNKNDLLSLKCTTTRYKKSFIPYAT
YHWNNLTLADRSLSLPQFKKKMVKSVRPVSVPYFSIGPRFTCAILTRFRLGTHSLNSNLYSRNLVTSSACACGHHCESIY
HYFLYCPNYTQYRISLLSNLHKLVGFAINMDDLSDHDLVHLMTRGSAFLSNSINTKLLQHVQSFIKETKRFE
>CR1-10_BF_pol#LINE/CR1-Zenon 1-3132  [Branchiostoma floridae]
MGIDLFLYRLTIGLFLSRYKQCSKMAGKSNPSSCKLSVVLLCITMMAALTVFTCLCSIGTDNVSAEFTQWKPAIDLTQHY
DVHPNPGPDLSELLLSTDFRSKGLLTIAHLNARGLVPKIDELRCLASTMYISIICVTETWLSSDISDSDMELEGYNLYRR
DRNRHGGGVLIYVNDQLYARRRSDLENDGTESIWCEVTKSNVTILINCTYRPPSSDDTFFDIYESQVQKATSNPQTVNLV
LGDFNSKNRDWLHSNATDNTGRLLDNIFLNHGLEQMLHEPTRGSNLLDLIAMSHPSMCYQSGTLAPLGDSDHLTTITTLN
LQTTRLSGKKLVWLYKKANLDALCNDLSQAPWDTNFIFDTMDDIWNSWYIMFMDICRQHIPHKLISVNRTAKPWIHQNKE
IKAAIRRKHRLHSRAKSKNTPEAWSAYRKQRNLVTTLTRNAEAAYIQEVTEDVEAGNTRRFFSFAKSALGKASTGIPALK
DGTDIIERPEDKANALNNFFIQQTDLNDRNDSPPTFQPTTIPETTLSNLQLTVDEVRQQLKTLKVGKSCGPDNITPNLLR
QVADTICAPLTRLFNTSLSLGQVPSGWKEANVTPIHKSGSRHLTNNYRPISLLNIVPKVLESLVNKHLIKQINPVLSHHQ
SGFRAHDNTTLQLARLVEEWTRAMDRGEVVGCVFLDLRKAFDKVWHQGLLTKIRAHGIRGSMLNWFHSYLSNRRQRVVIQ
GGTSEWKSPLAGVPQGSVLGPTLFILYINDLPTCCTQSDANLFADDTSLSTSNRSVQHVVNSLNTDLRSVSNWLTNWKLE
ANEDKCKVMFITTRTLPRPPAPVILGGCTLQVVTSYKHLGVTLTNTLSWSKHIETTSTKSRRSAGLLCALRKKVPKDILL
RLYKTITRPGLEYADVVWAGLTKRDETKLESIQYQTARLISGQHGLPYPSYQSLYTQLSLPSLQFRRQFHTAVTLYKLLN
GHCPPHLQTLIPRTRASATESRYSLRNSDHLTSELTKSTRGQKTFIYRATALWNTLPTATRTATSTASFKRKLWECLGNP
YAW
>TRE3C_gag#LINE/DRE 175-1131 [Dictyostelium discoideum]
KSKIFLYKHIIKKKNNKNNIKKKKKKKKMNFFDKLKGELNLGEEELNKKTIQIRLFYPHTLELNSNSTKLIDNFIVNGTL
NIVRRQKGITVFGRILKEKFTLLHECYSTFKYEDFPLQKFILYTPGYHYVHFYTFTKNIIKKINNQMVKENWGLEPLLID
ECNIVMLPDVIRYSCILLFNKEDDISIIKTNIDAIKGSKHPIRAFISEYNNKEIRDVRKKKNTSNKNQQPTTTNTTKSIP
STPPTTNASTTTPITTTPITTTQTTTTPTTTTHQLPTSNTTINNLNKTTTTTTTTTKPINKITTSNGTKFPIASSIRK
>I-3_DF_gag#LINE/I 208-1446  [Drosophila ficusphila]
MNRPPDLDYPALGNKTTTLDPKFLIISRTDNETFEKVSIFIIKRVIEFTCGGEIETCTKTRNGTLLVKTKSSAQAVKLLK
LSNFHNFTVKVTIHEILNSSKGVIYSNELRHVDEADILNELKLQRVNNVEKIFIKKNNILQESGLVIVTFSSTFLPDTIM
IGWERIRVRPHIPRPLKCRNCLRFGHPTKACRTPTKACSNCSGEVHTPDDTECDKPKFCINCKNDINNEYNHSPLDKTCP
AFIKQKEIITIKTLQKVDYKTATKIYHTRHTHQSTPYSKIASSEKPTITENQAPKTASTEGTNTNTNREIRNYNDIINPL
PSTSSKLIKQTTNPGIEHMDTETSAEVTATRSKNTTLESDRKLRSQTKDKSNVISKPSLKAKDKSDKSKPINTSKLANEL
SKLANRNSSEEEL
>I-3_DEu_pol#LINE/I 1517-5176  [Drosophila eugracilis]
MALTIIQWNIHGYRNNYTELQMLIKSQNPHILALQETHISNLSSLPSPINYTLHTSANNHNGFGGAALLIHNSISQNPMS
LNSDFDAVGVNIHSKYKFNIISAYISPSKSFNTNNLENTFASHNLHTLVLGDFNSWHPYWGSPKHNARGKIIADYLDKSD
FMLLNDKSPTHFSTHNTFTHIDLSFASSPLAPEIHWEVLDDLYGSDHFPILLSLFNNPSSPAFLSKPSFKLRSADWXLFK
EKSLLLNTSTHPSRNVNREAALIKKIIIQSAHFSIPQNTTFPLHRTVPWWNKELTLLKRDKSIKWRILKREVSXFNTIEY
KKANAKLKRAVRIAKRASIRSFTTDINQFSDPTKTWANIKRLCGMHPQKHIHCICNPMEITDQTEIANTFGXTWSEQADD
NNFSPQFRLNKQLLNTVPTYQPSNPALEIETNISYIEFSSALNSLRGNTPGLDRISYSMIKNLPIPVKLRIVNHFNNILS
SHIPQSLKLSLVLPIVKPNKPKTELSSYRPISLNPCLSKVLDKIVAKRLWWFVLNNDLIHNSQFGFKRGKSVLDSLLYVD
HLASRSIALKKHLSILSLDFTKAFDRIGVHTILHQLHDWHLGPKITNFVKNFMTNRKIIVKSGKCLSSIFPLDNGIPQGS
PISVILFLIAYNSLSNILSIPKQIKFCAYADDFHLLIQHNKRKNPTSNLSSLFNRIDEWCLQSGSILSVEKCQLIHICRK
HNCKAKIISGGTIIPSTNTLKILGLTINHRYNWTSHINKLKSDLTKPLGIVKHLSSLKYNTNTATLVQIVKSLIVTKIDF
CLPIYGRAPKSQLNRLKSSLNSAIRSALGAFRSTPTNNLLAESGINTIEHKRDFLTGKLSKTLSLSKDTPLKTFTKPQKR
NYRYPSTIDLILKICNSHSIPTLPIKKLPSKKFNMLNIIKATDTSLSKYNKNTTPPIVFQQLFHSLKSSYPNHNFIYTDG
SKANGITTYSITTERETIKTGLLPIFSSVLSSEIIAIQEAIVICAKLPGKHAICTDSLSSVTAILNHDNHSHYPTLARNM
ITQHFPKIKLIWIPSHMGIAGNEKADFAAKHAAKFPLTYTPNLSPSDASHFLKSLLHAKQTQLRTSVWYQEILKLSTCTQ
PLKNSLLNRREQIIITRLRLGHSFLTNAHYLDRTRNNVCPLCNISQIDIHHIICSCPSLSTQRSLFLNNPDPISTIANPT
DTNSLNILKFLNNSHITSQI
>I-4_AC_pol#LINE/I 2218-5889 [Aplysia californica]
MAVLQWNIRGLRANQAELSYLLTSHTPNVICLQETKLPTPTFTLKNYQTYNQIYTDNQIASGGNSILINNQTLHRQIQLN
TTLQAVAVRVTLHRPITICSIYIPPNYPLSLRELINLRDQLPQPFIMLGDFNAHSPLWGNEPTDTKGKIIEDFLIKTSTS
IFNDNSPTFQNSNNLNVSSIDLTLCDPDLIPDFQWSVLDDPHGSDHFPITLIPDIPHRTPIPDRFNLKRADWDGFHVECL
EKLNPSQTQTQTFERFHETLLEIVQKHIPKLSTKPRRNKCWFTEDCQKAVAAKKSALRKFVNSKTNEDLINFKIARAQAR
RKIRTAKKTSFRNYVSKINNNTPMHKVWKMIKKLKGTKKDTIKHILKPNNSFVETEKTVADCIASTLSGNSSTHNYNPEF
KKVKMSSEKTTVDFTSSNEEHYNCSFSLNELKCNIAELSNTAPGPDQIHNEIIKRLPDETLLLLLDIYNELWHSQQFPNS
WRLATVIPIPKPGKDHSNPSNYRPIALTNCFCKLMEKLINKRLMWFLETSNSLSNFQCGFRKNRSTIDHLVRLETFIREA
FIRKEHLVAIFFDLEKAFDTTWKHGILKDLHDLGLRGNLPEFIRNFLKDRSFQVKVGSTLSNLHTQEEGVPQGSILSPIL
FEIKINSITKTLQNNIDCSLYVDDFLICYKSKSKMDHIERQLQLQLHKLETWANGHGFKFSTVKTNCVHFCLSHKCVRQP
DLYLFGEKIPVKKQARFLGVIFDNKLSFLPHLKDLKTRCQSALNALKVLSNPEWGGDTEILLQLYRSLVRSRLDYASPVY
GSARKSYLKILDPVQNQGLRLALGAFRTSPVESLQAEAHEPSLELRRKKLSLQYALKLSSVPQNPAHKCVFGLPEDLKTL
SSLGNKVSPFGIRIQNDLKDIDFSEDIIEPFAMSSIPPWHLTKPNIDTSLEKHNKKSTDKTTYLNSYKQLINRYPEAEKL
FTDGSKNDSSVGAAALASPHSLSLRKLHPEASVYTAEATALEMALNIIDQSTKSTFLILSDSLSCLKSLERSDTSDNRIL
KLIIKLHFLHQSGKTITIAWLPSHVGIDGNEAVDQFAKESLKLPENKNSKIPFSDMKPKVKEHITSSWSQSWNQQIHNKL
HYIQPKLTPRKPFSLPRREKVIFTRLKIGHTHVTHKHLLEGEEAPFCVACNTNFTVRHILMECVDFNYVRDKYFKCKDIK
TLFNIIEPRRILSFIKEIGLFNKM
>I_Ele14_pol#LINE/I 3200-7057  [Aedes aegypti]
MPGPALGGAPLESATRTLCPPNGFSQTYFSTAAPSPLPVVGSTPGPTLGGALSGSVSSTFLGSTNSKETSLSSFPVPALP
TSHNFILQWNLNGYRSRLCDLELIIQNNQPWILALQETNNISADEMGRTLGGQYAWTVKRLANQRHSAAIGILKGIPHKI
LDLPSDLPIVGIQLLGSPSVSVACAYLPGGNIPNLHGQIQNCLQALPEPRIFLGDLNSHHPVWGSPKADKRGSTLINAFE
EEDMLILNDGSPTFFNGHFSSEIDVTAVSLSFARNIQWSVSSDLHGSDHFPIRIALTTGASIPKNTRRPRWKYDKADWAE
YDLLIRSALRNSPPDNMADFISTIVESAKATIPRTSSTPGRKALRWWSDETKTAVKARRKALRQLRRLPLDHPDRQSTLE
NYRKLHLECRNIIGDAKKATWESFLESMNASQTTSELWNRVNALNGKRKTTPLTLQVQGNAISDPEAVASELGKYFASLS
AIESYETHFXNSVKPSTSAINNFIIPPNTADPEMEQPFSARELSFALSRSNGRSAGPDEVGYPLLKNLPSVGKLALLDLY
NKIWANNDFPPAWKESLVVPIPKANIPTRDPTKFRPISLTCCAGKVMERMVNRRLRYHLEANGLLDFRQHAFRQGYGTST
YFAGLSDVLKEAYDKGNHAEVISLDISKAFNRTWTPLVLEQLAAWGIGGRTLHFVRNFLADRTFQVVIGNTKSSTFPEET
GVPQGSVLAVTLFLIAMNGVFSRLPKNIYVFVYADDIVIVVCGSTPTMTRIRAQTAVKSVAKWASDNGFQLSASKSIRCH
ICPSGHRITGPDITIDGQPIPLRKTVRILGVIVDRALSFRQHFDTVKSACRSRLNLIKSISRPHRSNNREIRFRVARAIV
DSRLVYGLELTSIAMDRLVEVLSPIYNSYIRIISGLLPSTPSDSACVEAGLLPFRIFIRSSICCKTAAFLSKTAGEDRVF
LLDEGNRALSTAANLSLPPVTRVHWLGDRSWRSVPPKIDNKIKNSFSAGSNSAALRRSVAELLQTSYSDFALRYSDGSLT
SAGVGIGVAGDIPDVSMSLPSQCSVFSAEAAAAFIAATTPSDRSILVLTDSASVISALQSDSPTHPWIQAILKYALPDTV
FTWIPGHCGVPGNEMADHLARSGLSGQRYTSEVPFMDLKRWIKSTFRQHWEDSWYRTRTLFLRKIKNSTTTWSDLPILKD
QRILSRLRTGHTLISHNMGGGPFHKECESCHIPASVDHVLCACPMYEHLRQIHGLSDNIGEVLRDDATTIAALLSFLRDA
NLYSSI
>I-5_CQ_pol#LINE/I 1276-4938  [Culex quinquefasciatus]
TTKGTPAQAFPLQFLQWNCRGALSKKASIINLINSTHSSILCICESHLDSAANFDIPGFHLFRKDHQSNSRGVLVAARTD
LNPTSLDIPTPQEIDAVACQVRCRLGKLTIVSVYIHPNTVVSQNTFEDFFNSIPQPCILAGDWNAKNPAWGGDIQNQRGT
NLLAALDVSRFVVLNDGSYTRFDANRLPSAIDLTIASADISLLFEWAPLDFPYGSDHLPITFGTTTEVVEEQQPGINYKR
LDWEKFSTLLDERVKLLSPTASYEVFFETVWRSLTDATPTKSSTQVRKLPQPYWDTELQTALEDRRDKFRAWRRKLDYES
YCIYTDAEQHFKVLVNRKQRESWRSLCDSFDSQTSVQKLWRLGRRYKNRVTGANHRLRDEVQLNKLLDKLAPPSTSREPL
EFNQCNCSCTTAGAYFTTNDLDSAIKPGQDTAPGVDGICYSVMRNLPFTAKMKLLRIYNDIFDTGRIPEAWKVFKVIPIL
KPGKPPSDASSFRPIALASCFRKCYENMIKEKIEWYIESNKLFPHEICGFRKGKGTLDALHILVDQVQLALNNNQHVIAC
SVDVEGAYDNVQIEVLVAQMRRLGISECLVKAVYSLFKERLLHAVLDGNPIQRVTWVGLPQGSPLSPLCFNIVIFSLFGF
RIAGVFYLDFADDITVACRGANLDESIRNIQTAIDEVVGRINALALRVAPSKCSSIIFSRRAVDDDRTPVLTVDGSPVPY
LRSIKLLGLHLTPTLSWRKHFLYVKHRAATYTNFMRSVAGQSWGADPAALLTIFKSCIRPILEYASIFFTGAPQADTIIL
DRIQWSCIRIALGSTKTTHTGSLEVLSGLMPLKHRREMATMKFVERRFSLLPWHERFVNTTLEGQSSTWIRRNILQYRAF
SGWLSTRDTLPCFQFDLDTRRVAVKVDLSVHRAMQEGLHQPASDRVEAEIQRNYSNATLLATDGSKDGNGVGYAVVDSRM
RTVHSTKTHKLLSIFHAELLALRQAVEIIAGSGAGEYVVLTDSLSSLMSLSNSRVSSHQPSVWFEIKRFISQISERGANV
TFMWVPAHRGVPLNEAADRAANQARITGGSENYNLTSLDISFPARKRAMEHWQLDWDNGTKGRFCNKIVPTVDTSPWFAD
RDXNRREIVVLSKLISNHSRLPAHLWRNNIVEDATCQCGESSATPDHLLFTCDLYDDDRRALWRAIVSQKEIPDLELVLK
SQNDVVLRAIVKFFDDAAIDL
>I-2_DVi_gag#LINE/I 182-1594  [Drosophila virilis]
MHEPPDIRTHGLKSNNTNLGEPKYITIKRNDDNTFENVSPFVIKKTIDFACDGEVETCKKTKDGSLLIKTKNKLQAIKLL
RLKLMTNIEITATEHKTLNSTKGVIYCNELRGIAENEILMELKTQHVTEVRKILKKPPTNTNSDENNTMLIETGLIIITF
GTLNLPEKIRIGYETVRVRPYIPLPLRCRKCLRFGHPTPVCKGIETCINCSNAKHTNENELCKNEKNCLNCSNNPDIDHQ
HSPLDRKCPAFLKQQELTAIKITEKTDHKTALNIYNNRHGQHVRTSYAKTLTNTTQHSTITQAPNKPNTHTPTNTSPITQ
LTPLTKTTHQTISAALHAHSRLNAASYTTSSTKTPPAPSPTSAQQPNSIEPEPEDMDTDITHHTKATNKPYTSHLTEDLK
IKLYAKDKSNNLSTTLKTTKPNTKTKSKTQTKTNTQTTGSDYIKKKKKTXFNLTLHLNLNLNQTKPITLIT
>I-1_DAn_gag#LINE/I 182-1321  [Drosophila ananassae]
MRDPPDIWKEKPSPTSKFLIISRTDDSTFKGVSPFNIKKVIDITCGGVVVSCRKLRDGNLLLQTKDNRQAEKLLKLTTIL
DIPVAVSEHRTLNYSKGIIYSNDLRGIDEEEILENLKSQKVSAVRKIMKTFTVEPTETGLITLTFDKLDLPDHIYIGYER
VQVRPYIPSPIRCNNCLRLGHLQKFCKNTETCFMCSQPSHIDMTIGEKCERGPCCINCTEKKMPDNKHHPRDRNCPVFLS
HKEVQAIKTLQKVDNRTAWSIYRKRHHHDGSLYASVASSMQHNTSQQQRLTQNTPPTTASTSHHPPSSEDTGRPIIGYDD
KEDESMLTDSSIENNRKDSTNSKVNILPKNISNRTKRNLINKEKTNSTIITRSKLKILQN
>GilD_pol#LINE/Genie (a.k.a GENIE2) gi|20148855|gb|AAM12686.1|AF433877_1 putative reverse transcriptase/endonuclease (member with ORF; Burke & Eickbush consensus BK000098 does not have ORF). [Giardia intestinalis]
MNARWYLWVPREQAVSLYLGDHSEDACPLAGHTRWLCGLPCESAKQPTEHLREANDDRHRVLGDDKLILPAHIPNQTEPA
MLIHQGARMIASIEQAGTGVALPAIRGLDALVGSCQRAPLPDNTTEQSQSKADPDPEKARRRIANRVNNALSFGAVAKAL
RALDETPTIDKPEKAKAALSALHPCVLPEGYVGLDYPPSMSSTGLEPATEEEMRKALFGTLNKKASGVSGLGPVQLKAMK
QNDSFVKYLTQAYNELTTHPEAMSDVMAMFEFRAILIPKESDGYRPIAIGKTVTNIFHRVLLKRLIRHANYLSCEQIAFK
QNAYAVGVRRAHELISRPGMHAVSLDTKNAFNSLPRAEVVRALNEAGVPKVLVDYIRNFLDLRHSRDVKCEVCGVPQGDP
LSTFLFCMAIERLLRRLKERGITFLAYADDIVAFHDEGYPAGVITQQATAEAAAMGLTIRSDKCKSTMAGEEVTFLNHPV
SPTPASLAPKAIAGAETALRKIENAPITIHQKLILLSLCVVPMVNYAPLVEITSDKADYEELDRRRTRLQQTNQQKLRSP
GRLPGVPEEKGGLGLLMPGLYHDELRRAWASLDVNKGTRDPVELSVGGQALQGKGTYFNRLLTRTHQLPDRAAAYCLQMC
GVLTEEERALKEKGGSIMAQTRGTCPGCHTARTLDHDMNCPKAAWTRTTRHDMIVACLYLRVSGKFNAELEVKTHSHLSD
QNQKPDIWLVDKCKAIDVGVIQPRQMDAYYNEKVKKYRDGTLPIIYGTDGSLHPKSKRHLEELHVDVEKLSVRAAFAIAH
MAAEANEHLTKLIRRAGPKAWSPRATVSCHPTSDNRMNPSLGPDDNDREGAQDWTHNRVESQPGEKAPLAAADLYGQY
>I-1_DT_pol#LINE/I 1430-5077  [Drosophila takahashii]
MTIKILQWNINGYLNNYNQLQLLIKKYTSQIICLQETHLIPYRNFPTPINYNIYTHNSAGNASGGVAILVHNSIQHSEID
LPHDFESLCLRIHSKYTFNIICSYIPPRLHFTYNNLDNVYCNLSTPTLITGDFNGWHTLWGSPSNNSKGITLAQFIHQSP
LAILNDGSPTHFSTHNTLTHVDLTLASAALALESNWSIETNTFGSDHFPIITTLFDTTSTPTIVPKFKLDRANWPKYKEA
SNYFSLQRPISQNLNKEAANLTKIVHQSANCSIPQTSPNRFSKRTVPWWNPHLQTLKKSKNFHFNILRRNISNANIINYR
KANALLKREIKIAKRNSLEIFTSEINPNSSTSQIWSNLRRFCGLRPRVGIHCIAKPNSPTKITDSLAIANELCSFWSTES
NDENFSTTFTHHKNNLLPIAHNYQPSTSALKIESEITTFELNIALSKQKGKSPGLDRVSYQMLQNLHPTVKIRLRDHFNN
ILNNYIPQHYKLSKIIPINKPNTDKTSLNSYRPISLNSCFAKTLDKIIANRLWWFVSYNNSIDSRQTGFRKGKSISDNLL
VLDHLISSSLSTKNHLSVISLDFTKAFDKIGIHTIVDELRSWKIGPVIVNYCINFMTNRKIKVYANNHSSFTRPQHNGIP
QGSPLSVILFLIAFNKLNSVILNHKQFNFCAYADDYHIFKKINKNSRIDIDPLITDILTWCEYSGAVLSLNKCKHLHFCK
KHSCQLRITTTLTPIDNTDTLKILGMTFNKKYNWKDHIATLVSSLSNRLNIIKCLSSNKYNCNVLTVINTIKTLIMSKID
FGLPFYGNSPESIIKPIKTIYHSAIRSALGAFRTTPIHNLLYESNMMPIDIRTNYSISKIIKPILLSNNSPLKSIVTSIL
KSKKRNPKIPSVLNRSLKSAIELGLPTKPLIFKKQTNPPWWDISDSIDTTLHNLSKSTTPQLVYQQKFLELKNKYPYSTF
IYTDGSKTHDATSFSVVTNNTSQQHLLPYYSSIFSAEIIAIYNAILIVKHSPNPSVICSDSLSALNAIANPSNNSFYPTT
IRQILLKTNKITIAWIPGHCGIQGNEVADKAAKTAFSLPHQFYNNNNISDIQQHIKKHFKTQLTELFNKTNNYYKTNNFN
KNNIYDYGRLQTEIPIPRYTFTKIIRLRLGHTNLTHSYIFTRPPTIPSCPLCSSQITSPLHILIECSFLYTLRSSLFSSS
NPIQTIFDLKATNIKK
>I-2_DAn_pol#LINE/I 1459-5115  [Drosophila ananassae]
MLKIIQWNMNGYINNYNQLQIIIKNHSPKIISIQETHLHGNQNIPIPINYTLYQVNSATNRFGGVALLIHNSLQHHNEPI
NAFDFDTIAVTIYSKIKFTITSSYIPPNKNFTIQNLRNIYDNLQPPLLITGDFNSWHRSWGSINNNKRGNTLFKFINQSS
LITMNNGSATHFTTHHTFTHIDLAFASPPLNLNSKWHTDSSLACSDHYPIHIDLFEEHNMNNPTERPRFNLXKANWPLFK
DIADKLSTDKPPSSNINKEAANITRIIILAANEAIPQSRHSKRKRNVPWWDKTLQQLKNEKRIAWNILKRNINTTNILTY
KKANAKLKREIKIRKKMSMENFTAEINPNSPIGEIWTKINRFCGLKARHNIHCLTNPNDPTQSILDRNEIANTLCTHWSN
TSRDSHFHAIFLERKSNPILNTHIPSPAALKIEKDITFIELLAALNQLKGKTPGRDRISYPMLKNLSKTLQYRLLNLFNN
ILKSHIPQQYKASSIIPIPKANLNKTDVNSYRPISLNPCISKVLDKIIAKRLWWLATNGKLLDNRQMGFRKGKSVSDSLA
MLDYQITTSLSRKNHTSIISLDFAKAFDRIGIHSIIDELNAWKIGPKILRYTKNFLTNRKITVLVNKSYSNPQPLYNGIP
QGSPLSVILFAIAFNQLNKILATHKNTEFTAYADDFTIMYKLGKIQNSLNIDPLLNDINQWCNYSGASLSTSKCKHLHIC
RKKNCNFTLQSNNSPLQNVTSLKILGITITKNYKWNKHIDNLALELSRRLDVIKCLSSKKFCSNTNTIIYVVNSILMSKI
DFGIHLYGNAPKSTLSKLKTIYHSAIRIALNAFRTTPINNLLYEANILPIEHRTTYATQKNIKIIINSKNSPIEKIYNKI
INSKKTPKFPSSLHNTIEHLKNLNIHISPLTCKREKTPHWLHHITNINTSLHTLPKEDTPPLTYQLRFNELKNTLPNRHF
LYTDGSKSADGVSFSVTTENEIIEHHILPQYSSIYTAEISAILKACNYASKXGGKFVICTDSLSALQEIDNIKNHNFYTS
SIRNILNKDNKNKILLLWVPGHCGIIGNEFADETAKKAHNFPLIIQNNFNQIDILKHIKRNTQSLKYEILNHSSSHYKNI
NHDSEPSKNISRADSIKFLRIRLGHTNLTHSHLLTKTPPPICPNCNTILTLQHLLIDCPALEQERSKLKLKQTLTEITSF
DNIQQTVQFLKNIKMYHTI
>I-2_DAn_gag#LINE/I 204-1388  [Drosophila ananassae]
MPPDINRLFKTSNTESKFMTINRTDNNTFKGLNPFLIKKVIDYTCNGEVETVKVTKVGSLLVKTKNNLQALKLKKMTTFH
DFPVIVSEHKTLNFSKGVIYSNDLRNIDDETILQELKPQNVSEIRKIKKIENNEPKETGLIIVTFASLTLPETMMIGYER
VNIRPYIPLPMRCRNCLRLGHPTIACTSNKTCNNCSAEQHTAIDEICSNDKFCINCKYSLTDNKHSPLDKSCPEFVKQKE
LTSIKTIEKVEHKTALNIYHSRHIHQPTLYSTVSTEKSNIQASTTTKPQSISSKHLKNYKNTAITPAVTKPQQRNATTYD
DLDSHMDTTPPTASTSTLAPISSLNSSISEELKLRIYTNKHNTLAKSLKSKEKNEQKQKKNNKNKNQLNSDSDGF
>CR1-G_pol#LINE/CR1 1176-4151 [Gallus]
SWGSLLGPWPVVRAWNPPISKGETNPSAGASRAYRKSFKLATTGEGDKTGLTRDEPRGTMLELGVRQMTRLKCIYTNARS
MGNKQEELEAIVRQANYDLVAITETWWDHSHDWSAVMDGYKLFRRDRRGRKGGGVALYIKXCFDVEELGVGNDKVECLWV
RIRGKACRGDILVGVCYRPPNQDEEXDEAFYEQLAEVARSPALVLMGDFNFPDICWKYNTAQRKQSKRFLECVEDSFLTQ
LVREPTRGGALLDLLFTNSEGLVGDVKAGDCLGQSDHEIVEFSILGDVRRVTSKTAILNFQRADFDLFRTLVAXVPWESL
LKGKGVQEAWTLLKMEILKAQEQAVPECRKASRRGRRPVWMNRELLLRLRKKKRVYVLWKKGQATWGDYKEVAKVCREEV
RKAKAQLELRLATAVKENKKSFYKYISGKRRTKENFHPLLDAAGNVTTEDKEKAEVLNAFFTSAFNRQISYPQGTLRPDL
EVWDATQNTPPVIQVETVRELLLHLDCHKSMGPDGLHPRVLRELAGVIAEPLSAIYQRSWLSGEVPEDWRLADVTPIYKK
GRKEDPGNYRPVSLTSVPGKVMEQIILGEITRHVRGVQGIRPSQHGFMKGRSCLTNLISFYDWVTRLVDEGKAVDVVYLD
FSKAFDTVSHSILLGKLAARGLDRYTLLWVRNWLEGRAQRVVVNGVKSSWRPVTSGVPQGSVLGPILFNIFIDDLDEGIE
CTLSKFADDTKLGGGVDLPEGREALQRDLDKLDRWAEVNGMRFNKAKCRVLHFGHNNPMQRYRLGAEWLDDCEEERDLGV
LVDARLNMSRQCAQVAKRANAILACIRNSVASRSREVIIPLYSALVRPHLEYCVQFWAPHYKKDIEALERVQRRATKLVR
GLEHKSYEERLRELGLFSLEKRRLRGDLIALYNFLKGGCDEEGFGLFSQATNRTRGNGHKLYQRRFRLDIRKNFFSQRVV
RHWNGLPREVVESPSLAVFKRRLDEELRDMV
>CR1-E_pol#LINE/CR1 1395-4430 [Gallus]
EIWSSGGGWGSSLREGEDHLWQQAFQFNQEGFKLELPGEGILKPSHFEADDGNGCPGPGVGSQASKTAPKVQDKGTPIGK
SASMGAQLKCLYTNARSMGNKQEELQACACLQGYDVIGITETWWDGSHDWNVGIDGYKLFRKDRQGRRGGGVALYINDQL
ESMELHLGIDEELTESLWVRVKGKAGEGDIVVGVCYRPPDQEDRVDEALYKQIGAASRSQNMVLMGDFNHPDICWRDNTA
GHQKSKRFLECVDDNFLFQVVQEPMRKGAMLDLVLTNEEGLVSNVKLKGSLGCSDHEMVEFKILRASKRVRSKLATLDFR
RADFELFRELLGRVTWXKALEGRGAQESWSVFKDHLLQAQKQCIPRKRKAGKNARRPPWINKELLDLLKRKKKVYREWKQ
ERVTWEDYKEVVRAARDQVRKAKTQTELNLARDIKGNKKKFYRYISDKRKAREDVGPLRKETGDLVTRDTEKAEVLNDFF
ASVFTGKGSSHTAQAAESKGKNLEKEDLPAVSEDQVRDHLKNLKVHKSMGPDEIHPRVLRELADEVAKPLSIIFERSWQS
GEVPTDWKRGNITPIFKKGKKEDPGNYRPVSLTSVPGKIMEQILLKALLRHMENKDEVIGGNQHGFTKGKSCLTNLVAFY
DGVTASVDKGRATDVIYLDLCKAFDTVPHDILVAKLEKNGFDGWTTRWIRNWLDGRTQRVAVNGSMSKWRPVTSGVPQGS
VLGPVLFNIFVGDMDSGIECTLSKFADDTKLSGAVDTLEGRDAIQRDLDRLERWAHANLMKFNKAKCKVLHLGRGNPKHR
YRLGGEWLESSPEEKDLGVSVDERLNMSRQCALAAQKANRILGCIKRSVTSRSREVILPLYSALVRPHLEYCVQFWGPQH
KKDMELLERVQRRATKMIRGLEHLPYEDRLRELGLFSLEKRRLRGDLIAAFQYLKGAYRKAGEGLFIRACSDRTRGNGFK
LEEGRFRLDIRKKFFTVRVVRHWNRLPXEVVDAPSLEAFKARLDGALSNLV
>CR1-X3_Pass_pol#LINE/CR1 1361-4333 via tfasty with CR1-X_Tgu_pol, 1 stopcodon [Passeriformes]
DAPXSEGKKSSSTGASGARxQSFKLAWKGERDKTRLASDERWDGVPKLEETSTNGIPQSASRGVGYNAPHLKCFYTNARS
MRNKQEELEALVXSQSCDVIGVSETWWNESRDWSAGMEGYRLFRRDRQGRRGGGXALYVRERFDCTALTVSDXVVESLWV
RIRGMENKGDVVVGVYYRXPSQDXSTDELFYRQLGEISGSVALALMGDFXFPDINREYRTAVTSKSGKFLKFXGDNFLSQ
VLSEPTRKDALLDLLFVNREGLVGDVTVGGCLGHSDHEMVEFKIFGVMRKKDSRVAXLDFKRANFKLFRELLSRVPWESA
FEGLGVHECWSVFKNRLLEAQEQAIPPCRKSSKRGRRPAWLNRELLVELERKKKLYDLWKRGQASQEDYRAVVRICREKT
RKAKAQLELKLASVVSDNKKGFLKYVNSKRRSKENIGPILVEDGHLXNRDEEKAEAFNAFFASVFNNTDRPWAARSPESE
DHECGNSDFPFVDTEIVRDQLYQLNVHKSMGPDGIHPRVLKELADVTAGPLSIIYQRSWESGEVPADWKLASVIPIYKKG
VREDPGNYRPVSLTSVPGKIMEKIILGTTERHLKNNAIIRHSQHGFTKGKSCLTNLISFYDKVTRLVDEGKAVDVVFLDF
SKAFDTVPHSILLDKLSSCGMSGFTVRWVKNWLKGRAQRVVVNGATSGWRPVTSGVPQGSVLGPVLFNIFINDLDAGVEC
TISKFADDTKLGGAVDSLEGQEALQRDLDRLEHWAMINGMKFNKSKCRILHLGRSNAGHKYKLGEEWLESSPAERDLGVL
VGSRLSVSQQCALAAKRANPILGCIKHSITSRSKEVIIPLYSALVRPHLERCVQFWAPQFKKDVKVLECVQRRATKLVKG
LEGMSCEERLRTLGLSSLEKRRLRGDLIALYSFLRRGSGEGGAXLFSLVSSDRTRGNGSKLRQGRFRLDIRKHFFTERVV
KHWNRLPREVVDAPSLSVFKRHLDNALNNML
>CR1_Ele1_gag#LINE/CR1 1-726  [Aedes aegypti]
MRNNQLFWFCPSCATLMKDMRLRNTARAAYEVGQGHALNSHSDIMTNLKTEIMDELKAEIRNNFAKLINSSSCTPKSSKR
VGIDPRFTRSRRLFSTAANPVSKNQPPLLLGTGSTPSPSIEIGTVPPNQPKFWLYLSRIAKDVSADQVCALAKKRLGTDD
VQVVRLVAKGRDINTLSFVSFKIGMSLELKFKALSTSTWPKGVVYREFTNNNNREENFWRPGHVAASDDPLSLPTEEVVL
ME
>CR1-X_gag#LINE/CR1 42-1159 via tfasty with CR1-C3_gag, 1 frameshift and 1 stopcodon.  [Gallus]
MASTRQKAMSSVSPVASPATGTDAATQTELPREHAAIQVSGCRVCPSFXSVSDGSSEXTCGRCAQXEELLSLVTELREEV
GRLRSIRESEKEIDWWNRTLPSLRQTRQPATAQETRDPLPSRHQAEGGDLRGQGEWKQVSARGGRxIPSLPTSPSQVPLY
NRYEALELDGQANDDVDEGPSRLEGSPRASQPIPRITTTSVKKKRRVVVIGDSLLRGTEGPICRPDPTHREVCCLPGARV
RDVTRKLTSLVRPSDYYPLLVFHVGSDEVAKRSPRAIKRDFRALGRLVKGSGAQVVFSSVLPVAGNNIERNRQTQLINTW
LQGWCHRQNFGFLDHGMVYTTPGLLAPDGMHLSQRGKRIFVQELAGLIDRALN
>CR1-85_HM_pol#LINE/CR1 3-2876 Nearly complete, via tfasty with CR1-69_HM_pol, 4 frameshifts.   [Hydra magnipapillata]
FTNHLTxQPFKTIKCAYFNARSINNKLHHLHNLLENNNFDIILITETWLNKKTPDSLLLNGKNFKVFRHDRxVKAVGGSL
ILVNNNIHSVQYNLEIPEELQNTEITCVDIFVSSIDQKIRLSCVYHPPCAATSILRTKALCKLIYKITSKCNSTCIIAGD
FNLPLINWSIPISFGDSSHDLFVETCSANALDQLVSDNTRHNNLLDLILTNNSKNVFNVEAIAPFTSTCDHCMIVFDCNL
EKSKSIKKSIKYNFYKGDYNAIQSDLQNINWYMLAKQNQDVEVFWQIICKYLNSSISAHVPVHCNRKNNFQPLAIWKLAS
KKRILYREYKRTGNTSIHIKYKICSRLYDAEINKYCIFREKDLVDKANIAQFYSFVKAKTKCCSSVAPLLQPDGSLSTDD
CEKSNLLNNFFSSVFVTDNGIAPVLDLPTHSNSLNNVMFPYSSVVSSLQNLPPKSSKSPDGYPAILLRSIANAIAIPFSI
LFELSMSKKSIPLIWKTAIVCPIYKKGNPSLTTNYRPISMTCIVCKVMESIIAECITNYLLINNLITAHQFGFLKRRSTC
TQMLTTLNEWTTAANNKKIVDIVYIDFEKAFDSVTHSKLLFKLHCYGIQYELLNWITNFLTNRSQCVCVGNSYSKKILVK
SGIPQGTVLGPILFLVFINDVTSCIDGDCSIKLFADDSKLYQASNDGNNINQYLQLINTLKNFSEWSKVWQLNIATKKCF
HLRYGNSSLPLNSYSMNIGTPIESINSIQDIGIVVSSDMKFSNHCSFIASKAHSRSYLLLKSFISNDFKLLIKAYKVYVQ
PIIESCTSVWNPHLLKDIRRLEKVQKSFTRSVCKRCHIPYKDYSSRLNIFNLESLECRRIKFDLVMTYKIIHNLVDLPFS
EFFTFITFAPSYYPTRCHAQKLYSRIKCKNDTRRFFYCERIIKIWNSLPDYIVYSSTLSLFKSNLKKYNVHHHCTLF
>CR1-41_BF_pol#LINE/CR1 3-2435 fragment [Branchiostoma floridae]
LRESLNKIKPKGGQIWLGGDFNLPDIDWDNLTVKPNAQYGILSRGFIELVNDFGLTQVVKQPTRINNILDIFLTNSPSLI
DNCSMLPGIGDHDGIPLVTANVNPTRSKQKPRITNLWNKADETAIKAELKDYSNSITNRNNSKFTVDELYDEFIDKIKSV
MDKYVPTKTTKNKHTSPWINNKVRRLQKKKQRAYNSYRNNPNETTRNKYHSVRKLTKKTTRQTYRKYVNSICTDSPKKFW
SHIKHLKNEETGIPSLKCNGKLESDNKTKADILNSQFSSVFTKEKDQLPNLPPSNTPAMPHLNITTNGITKLLKDLNPHK
ASGPDGIPARILKLAAEEIAPALTIICQKSLESGQIPYPWLQANITPIFKKGDKSDPSNYRPVSLTCVCSKIMEHIIHSQ
IMNHFDKHSILINNQHGFRKKRSCETQLILTTNDLATTLDTRSQTDMIITDFAKAFDKVPHNRLLMKLKNYGISDQLLKW
ITNFLTNRKQRVVVGGEHSEWSNVDSGVPQGTVLGPLLFLIYINDLADDLNSNIRLFADDCVIYREIKNDQDHSLLQEDI
NKLDKWQEDWQMKLHPDKCHVMRFTHKRKPKLYDYRLGNHILTETRNHKYLGVTLNNQLSWSNHINNITCKANKTLGFVK
RNLYDCPKKIKQKAYSSLVRPHLEYACAAWDPYHKDHIAKLEAVQNRAARFVSNVPNCPNSQTSVSKLVSDLGWDTLKNR
RTANRLTILQKSRYDLLALPVDHYLQLNPRQSRHNHPNSYKPIKTNKDCLKYSFFPRTATDWNTLPYSTTLQANPTKFKE
EALQHLRNSQ
>CR1-37_HM_gag#LINE/CR1 353-1099   [Hydra magnipapillata]
IFLNKTIGRKLGAGSHSQSTKDIHNWCSQLSHAFLELFERLQKLETTKIENDSNIQNLKTEIIKAANSSKSICDWSLIVK
QGKQKKKPTEQLVATNVAINELEERKRRAKNVIIYGVAESANENIEMKSKDNDESKVKEIFKIIDQENVIPKFIRRLRSK
TDKPGPILVELTEDFLRNKILGSAKKLRSNELHKNCYLSPDLTEAQRLQDFNLRTERNKMNQARTDNDPFWYGIRGNQIV
KFKKKSNQ
>CR1-43_BF_pol#LINE/CR1 3-1778 fragment [Branchiostoma floridae]
LFWKYVNSKSKTKESIPDLKDGSGVATTDKEKAETLNRFFISVFTKERTDTMPNAQEQEYLAELVDIEIQPADICKRLKA
LNQNKSMGPDAIHPRVLKELAEVLATPLSVIYTKSLKEGKLPRDWKLGHITPIFKKGSKKEPNNYRPVCLTSVAGKVLEG
IVRDGIVKHMLSNQLFTKHQHGFLPGRSTTTQLLACLENWTCSLDNDLPIDAIYLDFQKAFDTVPIERLLVKVESYGIRG
FLLQWIRSFLTDRKQRVHVNQACSEWAIVTSGVPQGSVLGPVLFLLFVNDMPHSVKSDLKLFADDTKVFRTVREAIDCEA
LQDDLDKLQSWAKTWQMKFHPNKCTVLRLGAGHPPFNYHMTDHHGGTVNLENTTEEKDLGIKVDRNLSFEAHILSIASKG
NQMTGLLWRTFRYIDREVFITLFKSLVRPLVEYGAPIWSPGSWKLVDNIENIQRRATKRVPGLRDLTYEQRLRTLKLPTL
LYRRLRGDLINTYKYIHGLYDTEPCIPEIKKDGRTRGHSLRLSRPLSNTNKRHDFFSNRVVPWWNALPEEVVTAPTVNSF
KSRLDRAMENHPIMFNYRALDKPHKPTMTVC
>CR1-60_HM_pol#LINE/CR1 798-3947 via estwise with CR1-64_HM_pol, 2 frameshifts.  [Hydra magnipapillata]
MKSKKSEQISQKINQKDKNNLNQHMNSNDNISVCQPYDSLNIKTMLADSNINSKEVHLSRNFLPNNDLTQVNSVFNINSK
KMLNINPKKPRNSIKCWYTNATSLNNKYNELIAEVEINNPDVMFICETWWNDCSPKSIQGYSLFERERTYGKGGGVCIYV
KDSIKSFEVSNSVLQSQQIEQIWCNIEVGNESILCGCIYRPGISDIQNCIKITASIKVAYEMISNKTYSGILLNGDFNLA
KIDWSEEFFAHLQEPNEIASMFIDCLDDCYLFQNINKPTFQVDDITETNVLDLVITENNLRIYKLEHHPPLGSIKHGHHV
LTYNYNYSSSEEILxSLTKKNNIYNKGNYDEINKYFDSTDWSRIFENLNANECYEKWLEHYKIICNVNIPLTKSNKKKRA
PWFNKSLSEMIKAMIKAKKVLWIKCRNAKFRDQELEAKYKSIKNTTKKAIKNEIVKYEHTIAKNAKKNPKIVYQYMNNKT
QTKDYIRAIENNNGIVTTNLSEIANELNNFFSSVFTIEDKNLPEFPKQCDVLCPNPTFDIETVSKKLATLNVYKSTGVDT
IHPRVLKECCKSISKPLSIIFDRSFSSGIVPCLWLCANITPLFKKGDKLKVKNYRPVSLTSIVCKVYEESIIRDTLMNHL
TKNSILSDSQHGFVSSKSCCTNLLETFDIITQALEENLSVDIAFLDFAKAFDSVAHKRLLLKLQSYGIQEQLLCWFKSFL
SRRTQRVVLGEITSEWKKVISGVPQGSVIGPLLFVIYINxNDLTSEITNHCKLYADDTKIISVINTVEDSRTLQQDLCKL
VEWSEKWQINFNKEKCKIMHIGKRNLKYNYLMCSTFDIIQQNALVMEETTLESDLGVIISNDVKWEKHINTIAARANRKL
GQIKKSFCRLDEISMKHLYTSLVRPHLEFAVPVWNPYYQKDIDKIEKIQRRATRINSLRSFCYEDRLKKFNLTTLKTRRE
RGDLIQFYKISKNMDKVKWNHPPKIIKYAITRGHTQKIQKQFTHSTTRFNFLTNRIVNNWNNLTEEIINSKNVNIFKNKF
DRFEKNKIKK
>CR1-48_BF_pol#LINE/CR1 1-1827 fragment [Branchiostoma floridae]
IVLTNPKRFWSFFHSKTKSKSLPDKMKLQDEYAETAQEKAELFNSFFYSVFNCTDGETPLPDLIDTSSVPKISSVTFSVS
TIEAILKNLEVTKATGPDDLPAMVLNKCAAQLAPSLEKLFQLCVSNAKIPSMWKKANITPVFKKGDKSAVSNYRPVSLLC
ITSKVFERCIFNSLYPLLSNTLYPLQHGFVKGKSTTTQLLEVYDEIGEVLDKSGQVDVIFLDFCKAFDSVSHKLLVHKLK
SFGFSGQLLALFNDYLSERFQRTVIEGEMSDYLPVLSGVPQGSILGPFLFLLFVNDLPDCVEFGKMAMFADDAKCFRRIT
SIFDCFKFQSDLDRLVAWGKTWEMAFHPSKCSVVSMTRKTSPVEYPYSMSDSVLSRQDSYNDLGVHVQHNLSWNSHVLKK
ISTCNSRLAMIKRSVGFNAPFTVKLNLYRSLVIPHLDYCSQVWAPHTRLYLRKVEGVQRRATKYICNDYELNYNDRLTHT
NLLPLCYRRELFDILFLFKCFRNVYCTNISHVLNVSRPTRSLRSTDQFQLVPRPCKTESFSFSYCSRIAVIWNNLPLDIR
QHMYSNLTLQSVKKLLISYYRSRFSDTFTVDNLCTWTTTCRCSSCIVT
>CR1_Ele5_gag#LINE/CR1 182-931  [Aedes aegypti]
MEQTVVIKPKVSQDVNTTKSEIRHKLDPVAHSVKDVFYSNNGNVAIRCDSHSAAMKLLDSAKSTMSANYEIDIQKALRPR
LKIVGFSTDFDADSFLTKFRKQNDLPDCSFIQIVRFTKSKRDKENPMSVILEVDALSFKQLIKAKIAYVGWERCPVSESI
DVLRCYRCSEFGHIASICTKPLCCPKCTECHEVSECTSEYEKCINCTIVNKDRKLPADQQLEVNHCSWSTECPMYLKRLN
KSRQRIDYSS
>CR1_Ele36_pol#LINE/CR1 335-3769  [Aedes aegypti]
MEAPNPSNSVEPRRQHQXSRPGPVVETEERGXHRAPFGKYRSVSFTSQTETTSALSNDPSHSNNIETQSHPGPVFGDMEG
VYQSITSGYSSDENYARNSTSQPWRIVESILEAPGSSASVVPTPALAHHSRLXPGGNCSPGVFQPALAGKYIHDLAHTSP
DSASNFSSMAGSTNTSPLTSRVSSQQDIIVYYQNAGGINSDVDEFCVAVSDNVYAIIVITETWLDSRTLSRQVFGNDYEV
FRCDRNTNNSRKAKGGGVLVAVRSTFQARELENEAWRSLEQVWTSIKLGDRTLFLCALYIPPDRVRDRALVETHCQSVLS
VIEMANATDELIVIGDFNLPGISWKTSHSGFLFPDVDHSVIHANASFLLDNYSSATLSQINHVTNQNQRSLDLCFVSAQD
TAPFLCEAPSPLVKTALHHPPLQLSIKTTLLHDFNISPAAVSYDFRKADHRNIANLLSSFNWDDILGNSDIDTAAQTFSN
VLNYVIDRHVPKKSHHPPSRSPWQTNELRRLKSRKRAALRKYTKHRTTSLRRSYVQINHEYKRVAKRCFLQYQQGIQRKL
KACPKQFWKFVNEQRREAGLPSSMMLNGNVASTPNDICQHFARKFASVFTEDRLTEDDIQLAANSVPLLSENMDAIDIDR
NVIARACSKLKKSFNPGPDGIPSAFLKEHLDSLLTPLLLVFQLSVTVGVFPSCWKLAYMFPVHKKGNKRDCNNYRGITSL
SAIAKLFELIIMEPLFSHCKPYISTDQHGFLAGRSTATNLLCLTSYITNSMSERAQTDVIYTDLTAAFDKLNHRIAIAKL
DRLGINGSLLQWLQSYLTGRHLFVDLGDCQSPTFAVSSGIPQGSHLGPLLFLIYFNDVNLVIKGPRLSYADDLKLFLRIR
STDDCRFLQLQLNAFADWCHLNQMDVNPLKCSVISFSRKKETIVHKYALFGQDIERVNQIKDLGVILDIQLSFKQHISFV
VDKASKILGLIFRISKHFSDIYCLKSLYCSLSRSVLEYCSVVWTPHYNNGVERVESVQRRFLRFALRRLPWSDPYRLPSY
ESRCQLIRLEPLSVRRDTARALFIADILQGHIDCPALLEQVNINVQPRALRNNVTLRLPLQRTNYSMFGAIYGLQRLFNR
VAALFDFNLSRQLLRRRFSSFFDRS
>CR1_Ele35_pol#LINE/CR1 1263-5066  [Aedes aegypti]
MEEVNSYSSPGRKLATSIKEASVPLTAVEPLPPATSSRPGPACEKEDEVFQNFSTGKYVILPRTSSAVPFVDFSISPSIQ
ILPTSSSWTPGRIFAACIKETPTLLTAVEPFPPTTSSRPGPACEHEDGVFRTPTTGKYADLSSISSAVSFVVSSITSSIH
SRSTSLKSTPGRTFSASLKEAPIPFTAVEPFQPATSSRPGPACDLEDGVFRAPMKGKYTDLPSISSAVSFVDSRNLVPKD
ALTDSRLYDLWTTALGDPQLAIAGPSRNSACFSAIPKLQLTAKPSIPFNVSGGSTQHKRPERCPENPSDMPFDLRIYYQN
VRGLRTKIDDVFLSTAELDYDVYVFTETWLDECIESRQLFSPDYSVFRVDRCATNSSRRRGGGVLIAVKEKFGTTVVSTR
ANIEQLWVKMSTQVTDIFIGALYIPPDKSQDGTFMQLHLDVISEVCSSRSDASPLVVFGDFNQPRLAWLLSNGYAIVDAL
NSHISSASQILLDNMAFQGLRQRNSIRNSSGRVLDLVFSDDSSKKSVLATPATEHVVPLDRYHPALDFSVQIPSSMTFYE
DIDLSERDFRRCNFDALNSLLSQVDWSEVHQCSDVDSAVTCFNAIIHNYIAETVPLNRPPRKPAWSNRHLGVLRRRRDKL
LQQYNRQKCAHFKRQLDEASRIYRGYNRFLYKNYVSRKQNDLRRNPKSFWNFVNSKRKEHGLPTTMHRGDVFTSSQDEKC
ALFAQQFSSVFVGRIPTVQDTEAATCIVPRDVVDLDIFHVNESMVYAALQKLKLSNCPGPDGIPSCIFRKCGASLVAPLV
SIFNKSLQSQLFPTAWKTSYMRPVFKKGDKTDFANYRGITSLSAGAKCLETIVNKVMFSSFCCYISEAQHGFFPRRSVES
NLVDFTSTCIRSMDNGAQIDAVYTDIKAAFDTVNHEILLAKLLRLGVSTRMCNWLQSYLRNRSLCVKVGSTVSHPFHPAS
GVPQGSNLGPLLFSLFFNDVTIVLANGGLLIYADDLKIFLVVRTEADCRDLQELLNQFARWCTMNFLAVSVSKCCVISYR
RCKSPILYDYNINGQELERVDKVKDLGVLLDYRLTFKLHYATIIDKANRQLGFILKITKEFNDPMCLRSLYCSLVRSILE
FASIVWSPYEAVWITRIEAVQRKFVRHALRDLPWRDPLNLPPYDHRCRLLGLEPLHVRRKNSRAVYGSKIVRTEVDCPAL
LQHVQFYAPERVLRTRQLIQIASRNTGYGANDPLNSICNEFRQAYGVFDFNLTTNTFRQRLSRTRFIN
>CR1_Ja_Tgu_pol#LINE/CR1 1030-3903  [Taeniopygia guttata]
EGFKLGLKGEGDKTRLARDEPGGGMPVLGVKSAAQLKCIYTNARSMGNKQEELEAIVQQESYDVVAVTETWWDDSRDWSA
AMDGYKLFRRDRRGRRGGGVALYVRECFDCTELEDSDDKVECLWVRIRGKANKADILVGVCYRPPNQDEEADEXFYERLA
DVSRSPALVLVGDFNLPDVCWKLNTAERRQSRRFLECVEDNFLTQLVSEPTRGGALLDLLFTNREGLVGDVVVGGRLGHS
DHEXIEFSXLGEVRRGINKTSALDFRRADFGLFRTLIRRVPWEAALKNKGVQEGWTYFKKEILKAQEQAVPMCRKMSRRG
RRPAWLSRELSQELREKKRVYXLWKKGQATQEXXKDVVRSCREKIRKAKAQLELNLATXVKDNKKCFYKYINNKRRAKEN
LHPLLDAGGNXVTKDEEKAEVLNAFFASVFNXKTGYPQDNRPPELVDRDGEQNRPPVIQEEAVSDLLSHLDAHKSMGPDG
IHPRVXRELAEELAKPLSIIYHQSWLTGEVPDDWRLASVTPIHKKGRKEDPGNYRPVSLTSVPGKVMEQIILSAITRHVQ
DNQGIRPSQHGFRKGRSCLTNLISFYDQVTRLVDEGKAVDVVYLDFSKAFDTVSHSILLEKLAAHGLDRCTLRWVKNWLD
GRAQRVVVNGAASSWRPVTSGVPQGSVLGPVLFNIFIDDLDEGIECTLSKFADDTKLGGSVDLLEGRKALQRDLDRLDRW
AEANGMRFNKAKCRVLHXGHNNPMQRYRLGAEWLESGPAEKDLGVLVDSRLNMSQQCAQVAKKANGILACISNSVASRTR
AVIVPLYSALVRPHLECCVQFWAPXFRKDIEVLERVQRRATELVKGLEHKSCEERLRELGXFSLEKRRLRGDLIALYNCL
KGGCSQVGVGLFSQATSDRTRGHGLKLRQGRFRLDIRKNFFTERVVRHWNGLPREVVESPSLEVFKKXLDVALSAMV
>LINE2E_CE_gag#LINE/CR1 53-877 [Caenorhabditis elegans]
MPPPDDNSANITDDSPANRTSIKCDPPKKVHGLPSTPTSSQPSIKDILERLTYLENLVAEQAKTIEELKAAQNSPLPAIS
QSNKNICPLYSDIVKSDPQFGQVTALTHLSSDLRKLNSKSEYTIIENVTDDKAKGKSPNDMEFMKKLSSIEDLPKPTEFY
RLKCKNPDITSRPLKLKFSSEAQRDSFIRGFSTALHSMPDRPITPRPIRCRRDMTPEELLMLKKMRSTAYNENLKAGEIR
YYVQDLKVAQLSKPRPLPTQKETPVPTPVLMDSA
>CR1X_SP_pol#LINE/CR1 432-3634 via tfasty with BfCR1_pol, 2 frameshifts. [Strongylocentrotus purpuratus]
MCFMWEKCGLEVKGIQCEGECEQWFHAECINFNSTDYSALGTSSIVWICNICGVHNISRSDLLLPSAFSSNLSSQNLSFD
HTDIETCTTNPDSKDEGESDDSLCLGSPKFSSSPRTSKKKPNNPTKPKAKVLTILNVNCQSIRAKKQSFAILIHQHNPDV
VIGTESWLTEDIRSSEVFPTDHYNIERRDRPNDPHGGVFLAIRKDLLASREIELETDCELIWCKISMPGAKTLHVAAFYR
PHEGDEMSLTELERSLSRLSPTHSVVIGGDFNLPGWDWRNQQVGNCRYPNLHRRLGSLLDDHGLTQVVTEPTRYQNTLDL
LLVSNPTVVNEVTVVPGVSDHDCPLVKLDVSQPYQMRRKVLLYSKAQWEKFGESMEAVRDEIEAKVTYASVNELWLIFKT
GIEKGINDFIPQKLTPHKANLPWVTNGIRRLIKKRDRLSNECKHLRKREGLIPYALEEQLRDLKRTLQFALRKAYWNYVE
SIFTVEDDDEGPGKYNCMKRFWQFIKNNRTDSAGIAELKSDGVLFSEPAEKADALNRQFKKVFTQEIPIPPHLLPDTSEH
ESMPDIVITVKGIEMMLKKLKPHKAPGPDGITPRILKQLSRVIAPILRIIYRLSYDTGEIPDDWHKANVVPVYKKGDRTD
PSNYRPISLTCICCKMMEHILASSIMRHGDEKDILHPLQHGFRPKRSCEQQLLGFVSDLHKNMELGLQTDVLVMDFSKAF
DKVGHQRLMHKLDHYGVRGKSNRWITNFLHHRTQQVVLEGHASPEVDVDSGVPQGSVLGPSLFLYYINDLPDKLTSPVRL
FADDAIIYLAIKGRQDPLELQEDLNRLAEWSSEWMMELNTDKCKTITVSRKKSQIRHQYILNNTPLEAVSSTKYLGITST
SDLKWDKHMTSICQKANNTLAFLRRNLRINSPKLKSTAYKALVRPLIEYSSTVWDPSSANHIHQIEMVQRRAARFTLNRY
NTSSVTSMLQQLDWTTLKQRRENYRLVMMYKLHNNLVALDKASYINPVTRPSRTAHAHSYQVPRSRTEQHKQSFFPRTVR
SWNNLPSETVCASSVNAFRQCLTGDSN
>CR1_Ele29_gag#LINE/CR1 591-1469  [Aedes aegypti]
MEICNSCAVNMTAPEVVCGGFCKATFHFKCAKISDTLYSQIVTNSATFWMCQGCREIMGNARFKNTLNSMNAATKEVNDM
YQKLVDDLKTEIKDSLIAELKQEIQGGFNKLSPAILSPAPXRFQFNNRSASKRLRDRDEVTFQLPDQPSKVFRGTNQAIN
ASEDSADRSXNRFWIYLTKISPEVTEDDVVNLAKNCLQTENVVAKVLVPKGRPLSSFSFISFKVGVSNDLKSRALDPSNW
PREIQFREFVETSSSVRHFWKPGQAADPGVSNNPELRPAPASTSYQPHQQLTE
>CR1_Ele18_gag#LINE/CR1 763-1620  [Aedes aegypti]
MAQICEKCANEISGETVTCGGFCSSIVCLKCSAISDAMYASIKANMHLVWMCTCCRNLLSKARFSNSLVSVNKASESVIE
SMKAEIRDSILADIKHEIRSNFKTLINSVPRTPASHYRTPLVASSKSKRPRENDDDXDNPASRPAKSMCCIGTNAADTNL
VVPEAPTEDSNMFWLYLSGILPEVPDSKVTELAESKLKSTNLRVVKLVAPGRDIKSLTFVSYKIGMPADLKPTALSTETW
PRGIRFREFENKGSKKQFFWRPTEPTPNQSDLTETPRASGQSHFQR
>CR1_Ele8_gag#LINE/CR1 2-856  [Aedes aegypti]
MSVVCAACIGDATESHVRCRGFCTETFHPRCTGISADTFEEVMKNQQLFWLCPSCTSLMKDIRFRNTARAAHDFGHDQAI
HSQSDTLQHLKSEILMELKNEIRTNFATLINSNSFTPKTTQRVKMDALPTTRGRRLFSTANLSAPKSKPVLLQGTGSTLS
PSTEIQTVPAPQPKFWLYLSRVARDVSVEQITALACQRLNTADIQVIRLVAKGKDISTLSFVSFKIGMNAELKPKALSTS
TWPKGLVFREFSNDNATGNFWRPRPPFAHNDPLSIPMEADNMRME
>CR1_Ele20_pol#LINE/CR1 1583-5752  [Aedes aegypti]
MSLHEDFENGERSCVGNIEVVDTPASSGNLIQSIWSAEARHDTAPCLNLNALQMAGRLHDHDDPLPASEDPFDEACCPAG
CSTVVDIRTSLESNGRPKLMGSTSTLSINTSSCSTQTERTSRSMMDAPKPPDTVEIHRSSASSDCSGHPSRSVPVFGVGE
GAVHLACLGKYYDVCDLSYPESHSTRSKTTTKRHHSASSSLPDIQFASSSRSSSSCSTATERTSRSMMDAPKPPDTVEIH
RSSFSSDCSGHPSRSVPVFGTGEGAVHLACPGKYYDACDPSCPESHSIRSKTTTKRHHSASSSTPDIQLSSQYASSIRGS
SSCSTVTERTSRSMMDAPEPPDTVEIRRSSFPSDCSGHPSRSVPVFGTGEGAVHLACLGKYNDVGSSSYSESHPACSDIA
SNVDQPSLTCHRGRSDSTAASDAIANKLMVYYQNVRGLRTKIDDFFVTVVDCDYDVIVLTETWLDDRIYSAQLFGNRFMV
FRNDRNPFNSTKARGGGVLIAVSNRLNCLLDSAHINPSVEQLWVKVTTPNRAISIGAVYVPPDRKTDMLYIENHINSIGA
VLSRLDTNDFALVFGDYNQSGLAWNVQSNNIPSIDVNRSVISASCSSLLDGFSLHGLVQLNTIFNRNSRLLDFLLVNEVA
LPDCTICEAPEPLIGLDADHPALETQINMSLPIQYDNFDDPLAFDFNRADFVSMSQALALIDWQYLETCLCVNEAVDYFT
SNLNHIISANVPLRRPSAKPIWGNARLRYLKRLRSKALRKYLENKNPLTKQSFVLASNEYRSYNRFLYNGYTNRMQDKLR
RNPKSFWSFVKTKKKEDGLPSEIYFGDKFAASVVDKSNLLAERFKNVFNDSTAAESQIDTALSDTPRDAFNLSMFSVTPD
MVESAIRKLKHSNESGPDGIPPSILKKCSTELILPLTKLFNASLLQRLFPERWKYSYMFPVFKKGDKKNAENYRGITSLC
ACSKVFEIIVNDVLLSCCKNYILPDQHGFYPRRSISTNLAPFVSLCLQNMEAGVQVDVIYTDLKAAFDRVDHSILLAKLG
KLGVSSDLVHWFQSYLTHRKLCVKLGSANSGYFTNTSGVPQGSNLGPLLFSIFLNDIGFALPTGCRILFADDIKIVVVVR
CENDCLVLQHLINVFCEWCDRNFVTISVQKCNVISFHRKQKPIIFNYTIDDLPLHRVDTIRDLGITLDSALTFKPHYLDT
IAKANRQLGFIFKIADEFRDPTCLKALYCSLVRSIIEFGSVIWCPYQRVWIMRLETVQRKFVRYALRHLPWRDPTSLPPY
EHRCQLLGIDTLESRRSTAQSVFVAKVLVGEIDSPEILANLLVYAPERPLRTRSFLHLPARTVNYGLHDPIRYMAARFNE
HYHLFDFGLATSTFRQRIERVLREEEREDI
>CR1_Ele22_gag#LINE/CR1 487-877 (internal deletion)  [Aedes aegypti]
MADHCLTCARASSSEELTYTCDGFCKRWAHRSCLxRDGLSCESAKAIPLIKQGTDVNSLNFISFKVGVDPKYRSAALDPS
SWPKGILFREFEDNKAKSFWMPKPSTPSINTTTNFDETPQITAASMETTEC
>CR1_Ele21_gag#LINE/CR1 362-1219  [Aedes aegypti]
MEICNSCAVIMNTSEVACGGFCKATFHYKCAKISESFYKEICGNSAVFWMCKGCCDMMKNSRFKNAMISTNAATLELKDA
YQKVVEDLKTEIKDSLIAELKQEIQGGFNKLSPAVLSPVPRHFQFRGRNTPKRIRDEDASEPTEQPTKIFCGTSQSASNA
LEARSDENFWVYLTKISPEVSENDVLNLAKERLQTEDVVVRSLVPRGKPLSMLSFVSFKVGVHNDYKSKAMDPATWPKGI
QFREFVDNDSNSRHFWKPPQRIDPGATSSIQSQQLSSHPVQEPLPT
>PARISa_DEl_tp#DNA/TcMar-Tc1 392-1435  [Drosophila elegans]
MPGKRVDENLIQLVYFNYYKGKPAKELAKMFNIKLRTIYNIINRAEKENRLHLNNSGGRPKKLTRRDQSKILKKIGENPQ
TTLRQLALELKNDCNVTVSHETVRKVLNTHKYSSHVARKKPMLSPLNIERRLNFSIANANQPAEYWNDVIFCDETKIMLY
YHDGPSKVWRKPKTAFKQKNIIPTVKFGKLSVMVWGCISSKGVGELRIFNDIMTKEFYLDILKNELTNSVKAFGFMNPQN
RNKLQYKLYQDNDPKHKSFLCKSWLLYNCSKVIDTPAQSSDLNPIENLWALLKKKVAKRGPTNKKALIQAIQEEWKKIPE
YYDLNVLIQSMSRRLNAVLDAKGHHTKY
>Sola2-1_DPu#DNA/Sola 844-3050 via tfasty with Sola2-4_HM, 1 frameshift and 1 stopcodon. [Daphnia pulex]
MTTIPSKCGHHLVAFSSHFSKFKQSTKCSNPLSIHCVDGVKSRNIPKAGKKSISLESCEAIKCHRPDLHVYPGQKLCTTC
IKELVKLKTKEIMKKSNTSESELEDMEEAFANEFSDNNDVFSPMRPISRSLKITSTLEVTPVNLDPKRSKKRQSDVFIRE
GRKVKNAFLQLHEPLIGEELLLSSKSNIGNCDFTSAGYEQLMDGIKQKCQDLKMKPESSIEIISLLTLAPVSWSRQQKST
FFGVSDHLVRRSAILKRGKGLLAKPDKKQGRPITEDEKEIVRDFYLCDENSRQLPGMKDYISVRTRKGEKNQxVQKRLLL
MNINELYVKYKEYCEHTLYLKSCGRSTFFMLRPCNVIEVDSSGSHNVCVCEKHQNVHLMVDTICGSNKEKLLLMDKVVCD
ILNQECMLKRCPRCPGTEPLKTFLTIIVANIPVIKFNQWETTDRSMLVQKELRNNDFVEELAKKIDTLTSHHIISKEQGK
YCKELKARLLENECILQGDFSQNYSMIAQDSTQSSYFNPASQATIHTYLAILNVAGKISNHSICVILDYMWHNTVAVFSF
LKIVINYIKEINPHVNKIIHFTDGAASQYKNYKNFLNLAYHKNDFGISAKWHFFATSHCKGPCDGIGGTLKRLARRASLQ
NRIGGVVIQTPESLYDWCSRNVHNIKSFFVSQIDVQRNEDMLDERFKFGKRIPGTQSFHSFIPIDGNRVEARFLSISNES
KIFTVNSQLAQTANYV
>Sola1-5_AA#DNA/Sola 364-2346 via genewise with Sola1-3_AA, 2 introns (894:949, 1452:1509). [Aedes aegypti]
MALQLLKDYGSGSSSEEEFEGFPAEAQVVSTFPLSSSATSTDCNDSDGSFTNEPVLKKRKLTKKERMKRSVAKGRRNTHR
AKLTMCRCHRNCNDHVSHDEIKAVNHAFWILDLEGQKNWIRQQVTRREISRRSTNWFENDLRKNTSFLFHLPTSNGTQVE
VCRKKFLNAIGYGEDCGNMVYRCFTEGEDGLPVPSRRGKHKRTTPKRDAVRAHILSYNPTISHYRRKHAPKRLYLPSDLT
ERAMYNDFVASSDAVSYALYCSVFKDLNISLVKLGHEQCEACVGFEQHDRQTGHGNPPVDQPNCSICQVQLEHLKQSRTS
RDEYRKDGEMLKKGVVVYSVDLQKVIQLPRLEGLKTVVFSQRLVAYNETFAPVGSYAETQPVLPCLWTEATAGRASENIL
STFIKFLKHHKTVREITLWMDNCSAQNKNWNLFGFLILFLNSAETDTKTLNIKYFESGHTFMAADSFHAAVEKQMKSSPP
LTYPDFEEVVHRSKRNVEVLSMGVEDFIELDFNISQYTLNQLKPRPYIDNIRLVQLTKGSLSFRYSDHVDACAEDLISCE
LFSKKQRKTITAPAYTLEKAFRRQQNPVGISSERKDTLINTISPLIEESKLIYWTSLATKQT
>Sola2-4_HM#DNA/Sola 1587-3503 [Hydra magnipapillata]
MHTVLEAETIGLNLIPGKKLCPTCRSKVMTCLSKSISENKNDEDFDIVNERSIQNKKESVDTHFASAGVSPIKVKGLHKS
GKIREGKRKLTALTTSIKKKVAISLNISEESFEEQSSFNNEYMEKANLFDNMMVLLTNKIAESTSTSKKVQLATLAPTDW
SIKKVSETLHVTNYVARTARKLTLEKGILTMPNPKLGKALPDVTVQLVKTFYEDDEHSRIMPGKKDYVSIKKNVHMQKRL
LLCNLKELFVAFKTKNPEIKIGFSRFCTLRPKWCITVGASGTHSVCVCAIHQNLKLLLHPLGVTYKELLPYIVCDITNKD
CMMRKCEKCPATMNALVEKLYDILGEFEDDDEIEFDQWTTTDRSNLTHNKEPVFEYIELVCRKLEKLAPHSYLAKSQALY
LRSRKEDMNEVTALFLGDFSENYKFVVQDEVQSFHWTNLQCTLHPVIIYFKKEGILKHKSYCIISDDMIHDVNMVYKIIE
VVCNDIKTNLPQIKNIEYFSDGCAGQYKNCKNMLNLCFHCEDFGFTAKWNFFATSHGKQPCDGIGGTVKRLATLASLQRD
MGNHILSPQTMYKYCNENIEGINFIYISSEDLTLVRTALKERLDTANTIPGTRSYHQFVPLGHQKVNYYFLIIPFTIF
>Sola2-5_HM#DNA/Sola 1553-3866 via tfasty with Sola2-6_HM, 1 frameshift. [Hydra magnipapillata]
LFLGSLREINLDSAKVLSSKGKFVVPGEKLCPQCRHKLASSEESEENELEIKLTEDNMEKEIILESTRSLLNSTLCELEV
SPLKVHLPKTSNKPSLGKRKIKQVEEAVIKKLATALDVTESDLVAPNNYEVLKEIETKAGDLDFLVECMKEKLKVSNRRQ
QLQILTLTPKSWSIRKAAKEFSVSKHKIQNAKLLRDQKGIIAYPNVVERHRISKDVIELVKLFYCDDEYSRQMPGKKDCV
SVGKKKYMSKKLIMCNLKELYVAYKIKYPDHKIGFSKFCSLRPKWCILAGPKGTHSVCVCTIHQNVKLMLSAVGLETSYH
EIIEKIVCSRKSKVCMIHRCNSCPGIQAAQIYFQQYLTQNDDPKEQYDSDENEQSVDFKQWTTTDRTELLTIQLPLNEFI
ELLCEKLDKITSHSFIAKSQSSYLKHLKETISIDEAIILADFAENYTFVVQDEIQSYHWSKSQCSLHPVVIYYKKVKLEI
SSFCVISDDLSHDVGFINEVMHKTINHIKTHLCPAITKIHYFSDGCAGQYKNCKHFYNLCHHAQDFSVQCIWNFFATSHG
KSPCDGIGGTVKRLVSTASLQSPTTGQILSSQAMFEYCQKSISGITFVYVTAEEMELVRIKLADRLLIATTIPGTRSFHQ
FIPSSHSIIKMKRVSDDDDFALTFDFLNKQKYEINKIENVMMSQYLFCKYDDFYWLGMVSEVDKENDDFMVKFMHPNYPS
RSYYWPKRDDNCWVPRMNVISLVKTPSTSSGRQYHITKEDETLFEHLLSCQ
>Sola2-4_HM#DNA/Sola 1587-4011 Via genewise with Sola2-6_HM, 1 intron (3462:3676) [Hydra magnipapillata]
MHTVLEAETIGLNLIPGKKLCPTCRSKVMTCLSKSISENKNDEDFDIVNERSIQNKKESVDTHFASAGVSPIKVKGLHKS
GKIREGKRKLTALTTSIKKKVAISLNISEESFEEQSSFNNEYMEKANLFDNMMVLLTNKIAESTSTSKKVQLATLAPTDW
SIKKVSETLHVTNYVARTARKLTLEKGILTMPNPKLGKALPDVTVQLVKTFYEDDEHSRIMPGKKDYVSIKKNVHMQKRL
LLCNLKELFVAFKTKNPEIKIGFSRFCTLRPKWCITVGASGTHSVCVCAIHQNLKLLLHPLGVTYKELLPYIVCDITNKD
CMMRKCEKCPATMNALVEKLYDILGEFEDDDEIEFDQWTTTDRSNLTHNKEPVFEYIELVCRKLEKLAPHSYLAKSQALY
LRSRKEDMNEVTALFLGDFSENYKFVVQDEVQSFHWTNLQCTLHPVIIYFKKEGILKHKSYCIISDDMIHDVNMVYKIIE
VVCNDIKTNLPQIKNIEYFSDGCAGQYKNCKNMLNLCFHCEDFGFTAKWNFFATSHGKQPCDGIGGTVKRLATLASLQRD
MGNHILSPQTMYKYCNENIEGINFIYISSEDLTLVRTALKERLDTANTIPGTRSYHQFVPLGHQKVGTKLCSVDEEFALI
HDFGNIQITTVNLVPGDYACVSYEQKWWIGVIEDINLEEKDVLVKFMCPNGPARSFKWPPKESQCWIPDVHIICKVEVPI
TKTGLCYYLAKEDLKKI
>Sola1-4_AP#DNA/Sola 855-2417 (Fragment) via tfasty with Sola1-1_BM, 1 stopcodon. [Acyrthosiphon pisum]
IDKATRENIFKKFWSLGDLQQQRNFIHSCMENINPLYRYPKSTGSNKRKLNQAFYFSVNNINIRVCKIFFKNTLFINDRM
IRTVLSKLKDGFVEKDKRGKHLNHKKLDSDIKDGVRAHINSIPRIESHYLRSQTTREFIDGGKSLADIHRDYVNLCKENN
LCFAKIDIYSRIFNREFNISFFIPKKDQYSHCEAYKNADEVQKVMLDENYQLHLHEKELSRTEKEKDKIFASNTSNKTTV
LCYDLQAVLPTPRGEVSVFYYKSKLSIFNFTISNIVKSSTYCYVWHEGEAHRGVNVIGSCVLRYLSTECDDQNVIFYSDN
CAGQNKNKFMISLYLYAIAKLNIISITHKFLVVGHTxNEGDSAHSVIEKQIKKSLKSGPIYIASQYVTLIQIAKKTDTPF
TVEQLSSDDIYDIKDISKNIGDNYTLNTNGEKVYWNNIRIVKVEKCHPGIIFYKNTYENDEFMKINVNMKKKGRRSSGIP
YNIKLAYAEKPKITENKKRDLLSLCDSNHIPKVYHSFYKNL
>PiggyBac-1_SM#DNA/PiggyBac 476-2245 [Schmidtea]
MTSKKFLNIEDIETELENFDDNNSFDGFEDDEILEATVSVPDQSNLSCPQSTAIDNLMEVCDLSDNESLSSSLPEENMEV
DSDSEESVWNKGELQHERDLPIDFDTVNVTPTYNFSVTDGPVVYFQRFFDAQVITDLVNQTDLYAQQVKIKNWVPVTLEE
LNAFIGILIGMALHDLPSIDSFWSSDPLFLVKPIADCMPIKRFKKILEALHCNDNSQAPAVSCANRDKLYKVRPLIDILN
TKFEIECHSSSSQSIDEAMIKFKGRSGIKQYMPMKPVKRGYKVWARADSNTGYLYQFDVYTGKLEDGVEEGLGSKVIKKL
STSLKNKNCHIVFDNFFTSYTLMEELYEHKIYATGTVRSSRKELPALAKKTQKMNKHESKYRIRNHTGYVKWKDTKIVSV
LSTAFRPNIIGEAKRTQKDGSTKIVPCPQSIIEYTKRMGGVDRFDQKRTYYGIGRRSKRWWLRIFYFMIDAAIANANILY
NVNHHNATLSGLDFRIRLHRSLISNYTSRKRPSLSNTPFIKKQKHNSTHKDLGVPDEIRLSKVGVHMPEKLTTFRRCRFC
SSKTNNKRSNIGCTTCNVALCINCFKKFHK
>piggyBac2_Mm#DNA/PiggyBac 277-2025 [Microcebus murinus]
MPSLRKRKETNETDTLPEVFNDNLSDIPSEIEDADDCFDDSGDDSTDSTESEIIRPVRKRKVAVLSSDSNTDEATDNCWS
EIDTPPRLQMFEGHAGVTTFPSQCDSVPSVTNLFFGDELFEMLCKELSNYHDQTAMKRKTPSRTLKWSPVTQKDIKKFLG
LIILMGQTRKDSWKDYWSTDPLICTPIFPQTMSRHRFEQIWTFWHFNDNAKMDSCSGRLFKIQPVLDYFLHKFRTIYKPK
QQLSLDEGMIPWRGRLKFHTYNPAKITKYGLLVRMVCESDTGYICNMEIYTAERKKLQETVLSVLGPYLGIWHHIYQDNY
YNATSTAELLLQNKTRVCGTIRESRGLPPNLKMKTSRMKKGDIIFSRKGDILLLAWKDKRVVRMISTIHDTSVSTTGKKN
RKTGENIVKPTCIKEYNAHMKGVDRADQFLSCCSILRKTTKWTKKVVLYLINCGLFNSFRVYNILNPQAKMKYKQFLLSV
ARDWITDDNNEGSPEPETNLSSPSSGGARRAPRKDQPKRLSGDMKQHEPTCIPASGKKKFPTTACRVCAAHGKRSESRYL
RKFCFVPLHRGKCFMQYHTLKKY
>piggyBac-2_DEu_tp#DNA/PiggyBac 888-2582 Fragment via tfasty with PiggyBac-5_SM, 1 stopcodon. [Drosophila eugracilis]
ESITKEPTKILWREQSMQLHVNCIAFRGDSSLTxEIKGLETPFEIFCYFFDGEIMKMIVEDTMRAALTDNISNNFKITID
DIHHYIGILIYMSIYRYPNLRSYWGQNAFGPIQNCMTRHRFETIKKYFSLCDESQRIKNGQPGYDPLFRTRKLVDYLNQR
FDSVPKQARLCVDEQMCSTKMKHHLRQYMPNKPHKWGIKLFVLCDSFGYAYRFEVYSGAGDNVILPGHPDLGASANIVVR
LTQSVQSFKNHIIYFDNFYTSLPLMVYLRAKGIYSLGTIRANRIPNCKLPNEGTINKLPRGSMIEYVGCSYGIELTNVLW
KDSKAVRFLSSYVGVKPFARKDPRQGTSKIPRFDRKSKKYVEIDCPQIVKEYNAHMGGVDLMDGLMGRYHIRAKTRDAAT
RIFYHLIDMAVTNSYILYRRIQMANEANKEKMLELPDFREAVAAGMVTYKCKNLPGRPSTYRSPCSQLVRAINSPSSRIE
QTAQSPLSHRPPQLGLKQGKKSKHPISSLRFDQVNHFPHWLERESGKRRCKLCKTSQTQCICPKCNLHLCCTSNKNCFLE
YHTKK
>Sola1-4_AA#DNA/Sola 355-2598 Via genewise with Sola1-2_AA, 1 frameshift and 2 introns (1146:1206, 1717:1769) [Aedes aegypti]
SQSEKTDESSSSSEDEGFQGFCDHEQRVDESGFEAFKAAVNGEIVPNVTPPGSWRSFSRAVLNETTGEALNSHTNHKASS
NAKLPECGGAKITRKEPSNVAERLCEYGVGSFENISTLKEPTEDIWNDPIDSDGSFFDAEETSATMKRTKKAIQKEDSAK
KRRMSHGIKLVDCKCKKRCPDKVGKDARTQNHTRFWSLDSLGQDSFFRETVQSVPLKRRVKDRFVLDGPKKRRSYVFNLM
SENELIEVCRKFYLNTIGYNENCGNMVXRCVDGDDNYNRKVSQRGKHTRDMTKRDAVKAHINSFNPTISHYRREHAPNRL
YLPSDLTEKAMYEHYLNKKNVHVSYQFYGRVLNQMNISIVKLGHEECKLCTTSTEHQKQSGHSTVQSSEGDDLCTICDKF
SVRLNFAAMSREAFRKDGDNVKPGCVVLAVDLQKVIQLPRLDGYKSIVFSQRLLAYNETFAPVGSYMKNLPVITCLWDES
IAGRHASNIASCFHRVSHRFKDSEEIIFWLDNCSAQNKNWNLFQHIILLLNSNDIKIKKISFKFFETGHTFMAADSVHAA
IEKKMRRSKAAETFPDFAGIVKNAKNHMEVMDMKFNDFFNTTMNTTQNMINQCTPRPYIEXIKHIVFKKGSHELSYSNAF
DGSELMNKCVLFSKKQLKQISSENFNLENTLKRQAVPKGITKDRKEALLKVILPLVSNTSKSYWNDLPLQ
>Sola1-1_AP#DNA/Sola 1537-3282 [Acyrthosiphon pisum]
MTPKEKVQRKRQRKVSDWKDVRAKAELNKGIEHINRSGKKKNAVEMGPPCKCKLRCFDKVSEDLRKKIFIEYWSLGDHSR
QWDFIARYVTTVEKKVTTLSTESRRSYSRKYSLPINNDKIKVCKVMFLKTLSISERVVSTVSQKLMISPVIPLDQRGTHH
TRPNRIQREVLDTIREHISMFPSVDSHYRRADSQKQYLESDLSISKMHRLYLEWVKDKTVCVKAKSATLRQYTDVFNTFN
LSFYKPKKDLCDKCEQFKLANEEEKLILQSEHENHLKNKDIARDKKNYDKLRAMNNHELCVAVFDLEKVLTTPQGEAGSF
YYKRKFAVYNFTVYDIGNKQGYCYMWDESEGKRGSNEIGTCLLKFIESMKEKGYKEFSFYSDNCGGQNRNRFIYSMWEYA
SFTFKVKITHTFLERGHTQSEGDSMHSCVEHAKKGKSIYVPAQWVTLVRCSKVKGNPFRVIEVSYDEFLDFKPLVEDKQF
NFKTSTNGDIIKWNSVKEVFVSFESPFDLCLKYDLNSTDFIHVNILKSKQRGRYQPHTKPSKAYKDKLPIEKSKHNDLLS
LCSMGLIPSTYHSFYKDLLSK
>Sola3-1_DPu#DNA/Sola 1131-4474 Fragment (first exon(s) missing) via genewise with Sola3-3_PS#DNA/Sola, 2 introns (3080:3137, 3423:3527), 1 frameshift [Daphnia pulex]
MVIKTKSKVSCQKFLSKWSREMAGLLCKCKSAVCDSCNNCRRCNCECQDAVQNDVPSSSKRRRNEVPLGQRRQVCENVNT
GTDFSKNPRGMYTALGMDPNSPIIRHLPAKAKRSCVTTWMDNxPQAKSMKTRVFQVYKEMFTFISNILCGEAAEISLAAT
VKEFREKGVTKKSSKSVSHVMIKTMSSSVKKKTVELRTTRALLCSSLTRAEVKKMCDKNGNVTISKDGFRKGKCDMQELL
SGKTLTPALRSVRRFRSVAVDSAITFILSSENVSFFSWGTKRWKVDGVEKFFPAVSRKTTRANMYCKYIATQEIPEVNKV
KRSSFFXIADTLTHSDAILRRAVDYVTGFLVNDSFAIIEKLITHFSGSATERQRLLVEMEVCKRYLTYGFNNGVVEKIPC
TAHDIRYGLGEDRTAPENFCDSCRNLFCCFHYLKKKIDGSGFDAAQSAMKALIGCEEKAVLYMGHRMRVTNQQMSIQKIF
DQMKDECVNNGKKLCVITLDYKMKLDPLYFREKTVDHYGKRGMSWHGSMVQYYTMENFEETSAPFLNKLYLDHIVDNENK
QDKLAVISILEAVILAIRKHLPNIDQIILQSDNAGCYQNTMLMLLIPYLSYAHGIEISRIIHTETQDGKSVLDAHFARSM
QRIISWCKEGHNCVTPAQVVVALKANGGLHNCTSELVTLNRERLQKIEVEFAALDGQLKKYVGRANDVLFCFQDNVTGRH
ISTQTMPENFSSLPDFSLRVFQHSDKGQGKFVCVLPSERRCTTVQQTAFDDDSEEDITLEEEESLPITQLDDAESINDTD
QSTSDVSDVEAEGTELNPPVEPEKVEGKVTGITVLTDNALTKRSAKWKKKTISSAVTTVNFLNRHKDMKTYAMKRALQLQ
DAGDIVFRSISDNADVSTDSYLTTQEDYLDPIFRCGWAKRPKVGQMYGTKYLEDYRSDIKSLYNSGEADKKNKKSPAQML
EIFESRYPNEFCLPSENDIRTEINKLQTQKKSATRDNRPRGSKDDDEQTNFIKDLALSNPSLKPTAAVTAMKARFAVVTL
TDAQIKSKFSYYKAKANKNT
>Mariner-3_HM#DNA/TcMar-Fot1 671-2554 via tfasty with POT_Cis_tp, 1 stopcodon  [Hydra magnipapillata]
MDNFKQKEERESRIQLAIQAITEKKMSYVQAAKCYNVAKSTLFDRTKGSSNNRGAPRKMSNITEAIIVDLLKFMSDIGFG
LNRKDVFIVVENYLKESNQRSLFKDGKPTRKWYSGFMNKYRKEICPRKVSGMQTIRAVATQPAIIDNWFEQLAVAYNEHN
LGDKPFQIFNCDESGLQFDQGKVKIICRKGTKNPKKLAPSNEKQMTTILTCCDAFGNYLPHQIIYKGKHVMKDWCKGGAQ
NVYYNSSSSGWMESEHFLSWFETVFLPHANKLSGFKVLILDGHASHMSLELKKKALENYILLWRLPAHTSHFLQPLDVGV
FKTVKGAWKRIVESYLTKNHFQSLTNxHFPAMFKDLIQNGGFKPENARSGFKNTGIFPLDRSQISSKKTSIGAVFQAVEN
NNIENLFDSSTVSSPLVMGNATNTPNTPSRMSNREFLLKSFATLNNAVQQVGKDINKSVLNMLRDQLTPTLNKRVQKSER
IKRPANYNMTSADAIAYDEAEQASKKQKLDEQAAKKFTREQKKISTATQKAKNAQKREEKKKLRQSQSSKIPGKKGIKTK
NQLEDPHFPQASNNILVSDDLLCYSCEINWTNNLDNQWLACEQCSNWSCIECVFDYRPTMEFICNECV
>Mariner-1_NGr#DNA/TcMar-Fot1 205-2964 [Naegleria gruberi]
MSNKQSSSYDTSPQSFSSYSNLIDLLPSVSQVPSWTCTQDQPDNTPIEKKDEKTPGKKKEEKPKELKKGTKRKFENVEEA
IHDXLTMKNVKFLKEFLKSEFGETGGNLRKDALVAKLVTRICSSVEEETDERDESFEDNIKKKALLIVERNQETYNESQA
KKAKLVNLEETEKKENPDDKIVLIGFKNKRKVGYVQKTREEQIKLVEKYKEQYSTPDRGSQQEFAKQNNISPSQFSRYLS
ACKRNELTLKVERGHPPPLLLKDQILQVIDITRKERSEKKQVSNIRLGEIMKEVAGLKKTPSVDYISKFSKKFLYKRKIK
TTITKRERIETAYEQLYRTYYYYCFYAAIMFRNLKSIDRSKIVVFDETGTNTKATERTNTPIKDDDAVVLQLADDIKDTF
LVAVTAEGGVLPVSIVESVPGKKSTINGNKVTVEEKIAGVHIEHIEQWVEKVYIPNSKEGDILLWDNLSHHKCKSVQKIL
KQHNRINILLPVGGHHQSPLDNMCFRYAKRELADWKKNNSNSDRKSRNAAFEQIISNMNPDVIVNSFRKCLMDIWNYDSE
EEYLKYVRASLKMNNDLYDLYIREFNPMCIGQFYVELPTPSVKVETDEKLDQDPILDDVNNPWIDSDSMKENFDQKQVEQ
ISKIILHIQNKTEFNHNIQQNAANLQLYVLSTETIACSITLSTEALETIKDDTVFLPGNTFDIFGICFSKISSQYLQYIP
SDFSQRVTNQSKKFIETNLPKSMKFTSKGFIIFPVARSLHWYLLIYDCQSTDWFLFDSFAKDFSVIESETSELFEMLPSF
IVKPKTVRKTLQKKIQVDGNHCGDYCVLLMDFLSAGFSLSDAVDIMTKPFSISNYRAILVARLKHLHVVEFEPQSPLSES
EGFQSEPKKSSKIELGDYDEELDELFNESWEDSIFGKKIQ
>Mariner-6_AN_tp#DNA/TcMar-Fot1 14-1759 gi|49098738|ref|XP_410696.1| hypothetical protein AN6559.2  (aka Aspergillus n.) [Emericella nidulans]
MPRVRVSSSQNCHEKEGRLLLAVQAIKKKEITSIREAARRFNVPESTLRTRLRGTTNRAESRANGHKLTEIEEEVLKQWI
LSLDLRGAAPTKAHVREMANILLAKRGSTPIQTVGQKWVYNYTQRHPELESRLSRQYDCQRAKQENPKVIQAWFNTVRAT
IEQYGILPDDIYNFDETGFAMGLCAHQKVITKSESCGRRPVLQPGNREWVTAIESISASGWALPPTLIFKGKQYNQAWFT
GLPPDWRFEISTNGWTTNEISLRWLQKQFIPSTEHRTRGRYQLLVLDGHGSHLTPEFDQICTDHNIIPLCMPAHSSHLLQ
PLDIGCFAVLKRSYASLVDQKMRLGISHIDKLDFLAAYPQARISTFKLDTIRNSFRAAGLVPLNPEPVLSKLSIQARTPT
PPGSRGSQASTFCPHTPANVDELLKQASLLRDFLKQRSKSPPSPSHNALNQLIKGCQIAMQKGILLEQENRALRAENAIQ
RRKRARTHRWIAHDNGLSVQEATELEEAHNASFQAIPGPCGPPAEGAQTPKARALPTCSTCHRIGHRRNACPNK
>Mariner-10_HM#DNA/TcMar-Fot1 1458-2954  [Hydra magnipapillata]
SRSFWTRFHAKHSSLTIKRQGQVSINRALNCTREMACNHLNDLAIELQAAGIMKNAEKVDEGVWKGDIDTTRIFNDDETP
QFVNYGVDGTSTGLVYAGKGEQCLKMHKENRECVSIHPFVSFSGDVCICQVIFSSVGITSQMTPQVAVEKISHLLVTTSE
NGISDNDTFKAACQEFDDYLTEKAIERPVVLLSDGHSSRFSYDGLIYLLSKQIWLFISPPDTTGVTQLLDQVNKNLHHEY
RIAKNYLFNPMQSINREGFMTILGNIWEKWTSKSVLVSSAKRVGITPFELNVNFMQQDKFERAAACIHKEEPASTSFKKP
ESTISSPVGIRKGSASYWKDKFDQSQILIREMAEQSLQLENIPDLLTIKKIKPNLEKISTRVTQVYGSMRAKDVAAKVKD
IKEEKRQKITAKEEAKKKKEEAKEKFIKCKVECFCKQRKCQAFGLKQCPNCLDVLRSICSKVSCRVDGVKPVMLLPANQH
FSTSKRLIYDHYNECNDNQ
>Mariner-9_AN_tp#DNA/TcMar-Fot1 100-1965   [Aspergillus nidulans fgsc a4]
MTPMDAAIEAIESLKPGDSINYTKIAKEFGVNRITLSRPHKGIQRSRRDQYEEQRILNDQQAKDLIKYIDKLSGKGLYIS
HEMLRNFAKELTGKKPGNHWPGRFLKRHQIELSSAYTTAMDSNRKRADSAYKYSRYFDLLAQKLDKYKVEPGNIYNMDKK
GFLIGMLSKGLRIFSKRKYKQGNFKQRLQDGNREWITAIACICADGTLLSPVLIYQAASSDIQDTWLQDFDPQHHKTFFA
SSPSGWTNDKLGYAWLTGVFDRETKDKARRQWRLLFLDGHGSHLTMKFFDYCDDNKILLATYPPHSTHSLQPLDVGIFSP
LSHAYSSELEAYLHISMGLSHITKRDFFRLFFPAWVKALSSKNIISSWRTVGIHPFNPEIVLARFSREPQSRPSTSESSR
SILGAEDWRKIKKLLHDVVEDVYSENTRKLSLAMHNLSTENILLKLQCEGLQIALQNEKKKRQRGKPLQFQLKASDDGGA
VFYSPQKIQQARDLQLGKERAAEQLKASKEEQKVRRQQEKEAKQRLIEDRRKIRASQREIHRLEAEQKRQEKEDARISKE
AAKQLQIDFQQAKKTPRKSSKASNHTDTQDTGPPSHVVVEEVPPTVNRRGREIRLPQHFRTN
>Mariner-1_HM#DNA/TcMar-Fot1 1089-2749 via tfasty with Mariner-5_AF_tp, 1 frameshift and 1 stopcodon  [Hydra magnipapillata]
MLNVLGVRKQACRNLRGRQITKLSPNAQRALQTKKLSKSFWKRWDAKYQKYITKKRQGTVSINCALNCTKEMACNHLNEL
AEELIKCNIFIDANQLETGVWQGDIDTTRIYNHDETPQFINYGVDGTPNGLVYAGRGESCQKMIRENRECVTIHPFVSFG
GDIAMCHIIFKGKGISAHMAPKEAVKRIPNLLISTNDSGSQDHSTLLSAYQMFDHYLEKNNIKRPVVVLSDGHSSRFDSD
VLTFLRSKNIRLFITPPDTTGVTQLLDQINQKLHSEYRSAKSVLYSLFMTIRQRRFHExILAELWPEWASKQTIINAGKK
VGISSGGLSVKWMQEDKFLRAELCINENTENNQLSTALTISSPKNVRYGSARYWKHKYESAMEAYQTISDKSISLEEIPN
LLPVTKVTPKINKENVRVTQVHGSMEGKKILETVSSIKEDKAKKEKANKERKSKQQQQIEAFYKCKEECTCGKNVCAATK
LRECSCCHNVLKSTCSKASCRGETGLKPNMIKPFCEIGPKKCLQFESDEDNVEDFIPDFIQNTTYHSLFADFGL
>Sola3-3_NV#DNA/Sola 1748-2914 Fragment via tfasty with Sola3-3_BF, 4 frameshifts and 3 stopcodons. [Nematostella vectensis]
YIRAFEECTQNxFAVASRIKHTLETLEAAKPHLTKAFLGCYHSAYLVLSLPSIGERAGINVARYDFSDPQAGKDVCDKRT
ATVKSHIRRFINEGNDIKCAEGMKVAMESYGGIKGCLAAVAKVNEDSQTMKAHENIQALNNFCFESRDLRAWKAYNVGPG
KRFTPEQLRRFGPTQGATRLIVCLPFGRLQQTGILRSTSTGNLVKTNHCLLSCPEDGCIKTYPSFESLQNHLDTGKHLIR
QERESTYDTLxRRSGHKTTREMTGSYLHRVVPSGNVAKIAPSTSSSPVRQAGWALKTTHKATRFYSDCYRCLCKDAISSx
CKQQETVQKGRELSADQIARYFSRLSVLYRSGRLAIDQANLSPDQDKEDFVQDAEQMQTRLEIQRELEL
>Sola3-2_NV#DNA/Sola 1474-6443 Via genewise with Sola3-2_BF, 6 introns (1658:1899, 2119:2478, 2684:2994, 3923:4122, 4795:4964, 5299:5608) [Nematostella vectensis]
MTTCDYAVCVGGPCGPSVDCSSNSKCVLLKDCNKDIHGHKKLLNISDKSLQTEFELLLARAGLFENGVLYDSLTICPRHR
DLHGIRFRLNKTYCVVPATWADHRSANPLGDKGITFLQSKALQAKVHQLIPVGSPICRRCRDRLKQDAPPSRSFSTTTAV
PIRSSEQGSELLEEVTCNQSSANISEDEEVQHLQIIIISYPYSTASSDEVKLSTLTVRRGKLNDFLHACGKEENIGPVKK
SWESMAIKAHRRHASRASNAIVSVLEVMVPDDPAGLWQEVQTSKKVEKALGLSSSFADALYLRALAETYENATTWATKWQ
ALAVMVDLVSLKELRHYLPNLSEYRYKAAKIHLLRFGRGAPVPVDRRPRMRIDEERLDFLLSFITSPHIIQDLPFGQKYI
RLSNGDLLETPNVIRSMIPARIHMQYTQYCKENAQRSLSETTVRRILKVCSATVRKSLQGLDYISAEDGKSFDDLIEVVR
KLEGVGGCDHSWVSTCEGGLKQGKQYLKSDYKVHVADACNVADHCTAYALSDPKEPMYATPPCEHQHDVFCSSCSELDVT
LTAIEAALKASSGKVPAEQHDELLFTYRTCIAAIHAWKSHQLRSIQQDKPRLSIMSGITESEVLIFQDWAMKYLPQKYRE
TQADWFGKRGISWHISVVIRRSSTGIAEHQIFVHIVENCSQDAMTVISIMEHTLREIKASTPGVSTAFYRQDNAGCYHNA
AMITACRFMESRTGIKVERVDFSDPQGGKGPCDRKAATIKAHVRRYIAEGHDVTTAADLRHAILSHNGVPGVRVALVDAS
SLRPLSSEAKIDGITKLNNFSLSDKGLTMWRAYDIGIGRTVPWQRLQDCQSDEADDDDESEEEIEEESPKLFCCPVEGCI
KAYHRHSSLEDHIQFGKCRIVEERYTLFDRAAIAYREKLLQGDELQPTLEPVLQEKASNDLCLGWALKTARKATRFSEKQ
KAFLDEVFQKGIDTGHKLDPATAALEMRYAKDLTGKRRFQVDEFLSDSQVQSYFSRMASKRRKALDSTQSEGDSRDEDAK
AADEQASYASARALILEECQLQHPIEYESINLCQLYEKGKLSTLNLVLLRQVSDFLDLDIDPKLRRKAPIIDKISAVIKQ
CSCAHN
>Sola3-3_PS#DNA/Sola 1364-4991 via genewise with Sola3-1_PS and  Sola3-2_PS, 3 frameshifts, 1 stopcodon, and 1 intron (4108:4178) [Phytophthora sojae]
MHARFDNGCANISTQARLPKITCGCDAARCRREDCLKCSKCDCEHDGRSISTKMSGRVGRPVRKKLNFRHLSDSSEVVPA
YGCSDDVETHAGGSYGDCGGNAHLNDGYPESPPLVASISGRSNSSGLYSVSVCGSSDDENGERILPLSVPIHVRRSVGTR
KTTAPSYFASLLSPPPLTPTPTKRSLPSWQAAMKFFGESEDDVVYIAKKLPGLSVRTTMPLWSSEVRLTSDQLKRRKVIM
KLYLRLLTYIAATLCGSEAAGASIHTFAKWLAPTEAKVADSDEMILISSARAILSTKKNSIERRTLRAVMCASVPYHRLT
LLSRTMPRFSISRPAYSRAIDEYEHLVIKGNLRKEPWSRARVKNECADAAIKFILAADNVAFLSWGSKRIQRDGVTYEVP
SIARKKSISLMFSQYKSSQQGLTTLERTTFYKLCSVLTHGTVQSRRAVDYVTGELLNDTMEIMNRVITTFLPDQVDILAR
HLQLVKTWLKYGSFSDVDKSFRDKSYVPTKTCSRHQIHFGLLAPAPEDIPTQNACCSACTGLKKVTDAILEHLKCGNASE
EALAVVADCYHKFDLFMGHRLRVVNQQRALHDILQNMRQRSIDGLGSDEILLVIDFKMKVEPMYFREKTTDHYGKRGMTW
HGAMARFWTLESNGEDDARVPVENKVYFDHISAGDNKQDREAVVEFLEAVILSIKRDLPKVTRITVQSDNAPSYQNTMVA
LMLPVLARAHRINICRFIHTETQDGKSMLDAHFAQGMIKIXSWVQQGNDCYTPRQLVDALSADQGLFNAIAELVEYQRTL
QQXLREELAPLEKSFGKLTGRVNDLFYEYPAPSDTDDTSRTAGSFCLEDSLNFSVRAFAYSGAGEGTHIAVDSKTMRCYR
QDASGQSDDWTNAEIVNQRSDEADGNDDNELRGLDVEVGFYITPITVTGFVTGVELITSSKMRRRTPPSVSHGHSNISPT
WNGEKLEFSEKDILVYAKXSLLVMKHAGDLTVIESSELASKMIQLVREYTGSEDVLVILEQGWARRPAKGCMYGANYVAF
YKADIARLFQQGVANKSDKLGPRRMLESIQEKYPWRFDFPSSSQIRAEISKLMKAQKETVHQEDSQNPVRNASGSSAEGN
PPGKRSSKRKIMDSTYVTFINRLMDSYPDLLAAQAIQHFRTAFPQAQSVEDATIRNRVNRIKRQKTG
>Cirt1_tp#DNA/TcMar-Fot1 (FOT1_CA in RepBase) from_retrobase [Cryptococcus]
MPKTKEVKQEVDETAIQNAIQDFKSGKFKTIAETARFHGLVPNTLRFRYNGGLPRKLAHTKEQLLSPEQEDEIVNWIVDS
DADADGHGRSRSDIIAFAELMLGTSESSPKIHESWYDRFKSRHDEIHTVEGRSISSLRAKAVTYEEILKYYRDYDSIVRQ
HKIPHENIFNYDESGFIMGKGKSSRVAVPSYKNRTYVQSTEGRDSCTVIEAISMSGEALVPAVIFKGGSLRTGWFKDDAP
DWYYTASKRGFTTNWLSLCWLKDIFVPQVKEKTSQGKVMLIMDGHGSHKTDEFRGPCEKNNIIPMYLPPHSTHLLQPSDL
GIFGPVKSRYKTKLSKLAGILEDTPVRQRLFIMRYHEARQEKLTKERIIKSWETAGLNPFDPDKVLKSSQLIVKRINDEI
DQAEKDRERCAKERLRESEPSLEKLTKSQMIEKYTKDVKMLKSRICFLEAMNARLQFDLNIATAAAQNKKPEGVSSAIPM
DENKGFKQVMGYIKEIRKDPKKKRRRKALGDITNTSKGSNSYTNFSGS
>46130700_GZ#DNA/TcMar-Ant1 gi|46130700|ref|XP_389130.1| hypothetical protein FG08954.1 [Gibberella zeae PH-1]
MAPRLSDADHEMMKAMIQNGEPTKQIAQSIPCDPRTVRKAKARYRLFESTKAPPNRVGRYKKVTPYKQDVLLENLAQYLT
TDRTQMVTFLHDEFEDDVSLSTISRSLKDARWTRKNCHPVAQQRNPELRDLYLYKLSKYKLYQMIFIDESGADRRVGYRK
KGWAPSGVTPIQVGRFNREQRYQILAAYTQDGDFIEQLLHGCGRWPQPKSVLIMDNASFHHNDELEPMCAGAGVELLYLP
PYSPDFNPIEEYFAELKNFIKKPGPELSELFKKDFQAFLQACVDAVGKRKASAKGHFRHAGLAIDEYMEQVP
>Harbinger-1_AMi_p2#DNA/PIF-Harbinger 2647-3408 R [Crocodylidae]
MSQKAKASSMEPTAQEADTSNARGPNWTREELEDLIDIWSEQRIIDRLESRRNKPVYVEIAKGMQARGHNRDWTQVRCKI
KSLRSAFYRAKDANSRSGAGRTIAPFYDKLSIILSKDAGDNPGMETFSTGVGQEEEEEEAAAAPPEGETMSMSQLYGDRS
LLPDDHEWQEEPSVTIHLVPLSPSVPRTSTDNEAEEVEGQEETHAADTSSTVTETQEHAGPGKSLVMCLLPLPGNARVRA
GWVWGGGGEIHVLL
>Harbinger2-1_TSt_p2#DNA/PIF-Harbinger 1332-2282_R [Talaromyces stipitatus]
MDSQISTSNESQLAANIAAAALQATEYIIITSSPPPPVRSQPTTDTQGTTDSQATSYNSTDDSDSNEASISQNTASQVKN
NKRGRSLKDEELSLLFKCALDLKLDYKPKRKYWEAVEDRFVRLIGHSYSWKSCKSQIERLSKKRRLYLAQYVTGREAEAT
SELDELIDQWNDFIDGYEKDEAEKLAEKNKYKENSQLVLAYRDQLVSTGLQKSKKQAPEELKPSEDDTGSDNRKVPEYRK
TATASRPSKKRSIQEAIFALVDVLEEDRQASKKPESVAKKSELERLSGDVKELQNQYKNLDEKLDKLISMIGEKRTG
>Harbinger-1_Gav_tp#DNA/PIF-Harbinger 187..2832 Seems a bit overextended.[Crocodylidae]
MTRATFRDLLHQLRPHLERQDTGMRLALPATPAWPSPCSSWPHPHACQPPVCGTPVRRGQGHRRGGRPGGVRRPPGRAGG
HRPPRPRPPGGGGGVPCTGVPPVYRGPGRDPHPRHLPTPRRPPLLQPQGIPLRGPAGVVDHRGTFTHVSAGWAGSAHDAR
VFRNSGLAGLVESGRFAPGVPDLQLGTIVVPPLLIGDPAYPLLPWLMRPYTGHLDPRQAHFNRCLGRTRALVECAFGRLK
GRWHSLTARLEVAEDNLPRVIVAACVLHNICEARGELFREAWAEEARWAEDTWQRQQHLPPAEAPGEPRTRQRGPGHRVR
EALATTSSSTPRSSPPAAAHGPPPTPPAHPQHHAHCRHVRRTSLYSPHITQTPLPPPSPTNRAPPPPTPPTNNKKPSSLC
KLFTKCFLWCPGVGGHGVGRLGGRARGQAASTPASGRSPAGPDAAASAAGGGLAQGRRRPVLPWAGGSPSGWRSPGPAGP
ACSPGAAPGSSGSAPAWSRGERRGWAQGGAGWRRTRGGGRARGSWRLEAAQDLLPGPGGGLLEVAARGHAGLGRGPGRGH
ERDRQAQDGVQHPAVIVRGLHCPAQDGVLLPQHLEPLTLQGQELPDAWSHALGQSRTSSWATSSPARPVRPPPLLRHRHQ
PLEEEGPVLVRLWRSRRIRRAPAWVAVTLSRIPTANCGLSPASRCRTCRAMRQKLFVRVCNISEIRCSVPGAVRCPASDR
GSGMHGCPGTMVSWAGRPGPRQPLAEPPIPARSPGAGGPLGAGRRQPASPAPFPGRDRPGSWQHLLPWLQTPLPLLLQAN
RSAALPPSPRRPGSGGAGLPDDWDEELPAPPPSPLGASPGRRPGASPPPRRCCSPCCVCPGRCAMSCLRGPRGARPTTPC
CC
>Harbinger-2_XT_tp#DNA/PIF-Harbinger 79-2465 (1 intron ) [Xenopus (silurana) tropicalis]
MEHDVIVPALLAALEVLEGAEAPDQQEPPVHLPLARIRQPRRFWRGVPSLNELSDDEVVRMYRLSRAAILQVFDLVRQEL
DPVTARSQALPGISKLLAVLHFLGSGSFQQVSARLVGMSQPTFSRILRQVLRALLPHSQRLISFPSTEAEWTRVKQDFYL
IGHFPNCLGAIDCTHVPLTPPRAHQERYLNRKRSHSINVQVVCDSHLRIMSVRSGFPGSVHDAHILRQSALYERFTQGEM
PQGWLVGDAGYGVLPWLMTPVRFPRTPAQRRYNCAHRKTRNVIERLFGVLMSRFRCLSVTGGALLYSPIKVSGIIVVCAM
LHNVAMDHGLRAHINYALEPEIEGYVGRRMDNQPQGRRVRDQLIASHFSCKLSISFT
>Harbinger-1_NV_tp#DNA/PIF-Harbinger 203-1563, Via genewise with Harbinger2_DR_tp, 1 intron (753:1081) [Nematostella vectensis]
MADMLLFGNLAGRPAQPRRFRHFRTELDDYYNDKNVKSRFRFNSDSIRYIADLLSPQLARSTKRNHALSPTLQVLVALRY
FASGNFLEVIGDTFGLPKSTVSRCITDVSKALVANKEEFIAWPSDEEKRQIKEAFFAKKGFPGVIGCIDGTHVRIQGPPR
NENDFVNRKGFHSINVQAICDNKGLFTNVVAKWPGNAHDSFIFQDSGIHDKLQLEHKSVEDGVLIGDSGYGCKPFLMTPF
PHPETPKQEAYNEALGKTRVKIEQTFGIFKRRFHLMHTEIRVDPSKATLLIGACAVLHNIAIIRNDVYNPPRGVVFEDDQ
PEVPPYEGPEDGLRIREYICQNYF
>HARB-14_SBi_p2#DNA/PIF-Harbinger 811-1146 [Sorghum bicolor]
MPEIDWNVENTRILCGLMAEQVEKGNRPNTFLNSVGYAAVEKGFKDRTGIELNKGQIKNKWDKLKEDFKAWKKLTMRQTG
IGWNNGTIDMDDEWWKKARAVSVCYIXXITXX
>P-27_HM#DNA/P 179-2884  [Hydra magnipapillata]
MPGENCAIFGCSTSRRHKGISIFKVPTPTNDANKKWSNDLINVVTRDRLIDDSLKKRIDSFNLYICELHFTEDQFWVYSS
RKILKDGALPTLNLPKKSNPSQRSSLSITKREEFLETQELISQTTPLCYKSFDDFTKRILKLSLGEXWKISFDERFAIIT
CXSPEHILPKFEIYVDELLDYCIRIFGWMLPIDHLLYLQYKGSFFNVSLSKFISHIETLILCPGVEVKNLDLINQNFKFE
KHVITKKFNYLLFKLLPNKPRLNQDEFYRSPYCNVLIKSQSCCSSCHSLQLKSNYEVNNKTKTLKQPAKLNAPLKFTSTE
RIKLSLQQQRLKCKQLESQIEQMKTVLNMESEKVNLELDQDLKTLYSGFNQKNIPDFXKLFWNEQQKYIQASSPCSVKYH
PMIIKFCLNLAAKSSSAYSDLRFDSKTGSGFLVLPSLRTLRDYKNYIHPSRGFNPQVISDLAYKTASFSSAERFVTILFD
EMKVQEDLVWDKYSGELIGFVDLGDXQTNYATLKNVRELASYVLVFHVKSVVNPLSYSLATFATTGVTSTQLMPIFWKAV
RYLESINLKVIAATADGASPNRKFFKMHKKLDGGSGKNIIYRTKNLFSNDNRFIFFFADVPHLIKTSRNCLSNSGSGCKS
RYMWNSGFFLLWNHISTFYNSDLERGLKLVPKLTSDHINLTPYSVMRVRLASQVLSETVGNVLKQFGPPEAAGTAEFCLM
MDMFFDCLNVKNSAEYITKRKPFLKPYETVDDSRFTWLDNFLLYFKLWKESIDQREGSFDESSKSKMFISTQTYEGLQIT
VHSFKEVVKFLLENGVQFVFSERFCQDDLENYFGRQRAIGRRKDNPSIRDFGYNDNTIKSQFSVRPINGNVQSNSNNIID
IENNPLPKRKRKSLIQIKSQH
>P-19_HM#DNA/P 1026-2894  [Hydra magnipapillata]
IHFLNVMETDHKKNIIQQQISVMSAKLIGKKIYESDIIIRSFEYFSTSRVLYNKLRNDFQLPSVSTLTRITSKVSKIDDA
SFLNSVFNSIEEKKKICIIIHDEVYVKKMLLYHGGTLFGKSLDDPSLLAKTVLGIMVVCLKGGPKFLYKMIPISKLNSNF
LFEQINSTIKLIKASSGDVKVVICDGNRVNQAFFKLYRTIPEKPWKTEDGMYLLFDFVHLLKNIRNLWLTEKTGELLYND
NGVQRTAKWEHLKCLYKLESEKLVKLSDLNEVAIAPKPIERQNVSTCLKVFSDKTYHALLTHSQINSNSKDTAIFIKKVI
TWWKILNVKGHGADVRHNDPLEAPICSPDDYRLNTLLQFGDMALEMCCKKGKRVKQLSNDTAKSIHHTCYGIVELCKHLL
ETSHDYVLLGMFTSDHLEKDFGKLRQGSGGTYFINVQQIIEKLHINHTSLLLSLNIDIDYFDLSSGHNCPSCTYVLCEAG
SEIFDNLEKLESSISDSTKMSLIYIAGYVCRNEYNESNLFEQTMLYYEKFGDYLNSIDRGGLKIPLDNVCQWVFFCFILF
HSIKDKVCRQSLSDIFLLVSEFYYFEIKQNHCNTLANIFLNNYCAQITPRSNKEPALKVLKLS
>AutoChomp1_tp#DNA/PIF-Harbinger 417-1859  [Crocodylidae]
MASHRPRPSTETQELRRVLLVALRDSRRRLRDITRAHLDMMRQLVAMXRGFVPPSQQPXVPRGATHRTLRPPSVLDWATD
FHVADEDEATQDAMDAGVLWHHLQTVERRFWARATSXDWWERIVLGTWDDEQWVQTFRMRRATFMDIVAQLAPHIARQDV
SMRPPLTPEKRVAIAVMKLATPSSXRYVANQFGVGKSTAGEAVREVCLVIQDVLANRFIRLVNPQEVVAGFRRMGFPNCV
GAVDGTHIPILCPPQGARAFINRKGYFSVVLQGVVDHQGRFTHIFAGWAGSAHDARVFRNSPLPEXMESGRYAPGVPDFV
IGXVVIPPLIIGDPAYPLLPWLMKPYGGQLDRRKEHFNYCLSRCRMTVECAFGRLKARWRALSARLEVDEENLPRLIVAA
CVLHNICETRGEVFREAWAEEARRADRAWQAEHTRRRDGGEGEPPADVGGAGPAQRQAVRIREALADYLLALGDREPSPD
E
>HARB-1_OS_p2#DNA/PIF-Harbinger 1630-2649 [Oryza sativa]
MFDFLMLPSVSIGFASYVFRLYPTEGFVNFLQQNCLPQPQEGENFHLVGQTTNTMSTPPPTPQAAANNTVQIDIHEDAIN
DASAKKRSLRYWTHDEEERLASAWLNASKDPIHGNEKKGDTFWKEVTDEFNRKGNGKRTREINQLKVHWSRLKSSIGEFN
DYWTKVTQMNTSGYDDDMLEKEAQQMYANTFGKPFALVHWWKILRKEPKWCAMIEKDKNKAEVVDIPDEQKRPIGREAAQ
AERNGKRKKDSMSEGIVILGDNIEKIIKVTQDRKLEREKVTEAQIHISNVNLKAAEQQKEAKMFEVYNSLLTQDTSNMSE
EQKARRDKALQKLEEKLFAD
>HARB7_ZM_p2#DNA/PIF-Harbinger 2405-3787_R via genewise with HARB-1_OS_p2, 1 intron. [Zea mays]
MCATSSCFSSCXVYVCRYLSGRDVDDMFLVMLNVMNFAIYVVFATSDFVVPDPVYSVMVCIHFIWLPEMYYTYLVKYVVF
FVRVPSLYSMGTDWNQVMAQYGSYLSEDDATQFQNTAFAPPPEIPAQGSPAPPPVKKAPQRTKLANFTSEEDMRVCQAWL
AVSCDPIVNTGQKRQGFWNRITEAYNSRRGSMPERSTKSLMSRWDSIKTQCSTFAGYMMAVLRQNPSGMTDADKTSLAAT
RFAAVEKKPFHFLHCWSILKDQPKWMDQHMGNQNPPPNPIGTQSNTIDLDAGEDSAPSSFTSKRPLGRDSAKEKAKKQRS
ENTSSTDSEYLTRMGELSLERLSVYKSVASTEEKKLEFMKKQERQKLILERKKLNLEKMKMERQKVKEETEQEVLILSMD
LTKCNPLLRQYYEAKQQEILARVTGSSSSSK
>MtPH-A6-3-Ia_p2#DNA/PIF-Harbinger 3189-3560 [Medicago truncatula]
MTSKKQLSTNNGNSGSLTWNKAMDDALVDALMQEFENGNKVNGTFTSIAYKNVTDELVRLFGDQIDKVKIQNRWKTLKRN
YSEYHENFKGGMSGFSWNSTTQLWDAEEPVWAALIEVNFVNLVF
>25777750_MMgene#DNA/PiggyBac gi|25777750|ref|NP_741958.1| PiggyBac transposable element derived 5 [Mus musculus]
MPPSASAVDFFQLFVPDNVLKNMVVQTNMYARKFQERFGSDGAWVEVTLAEMKAFLGYVISTSVSHCESVLSIWSGGFYS
NRSLALVMSQARFEKILKYFHVVAFRSSQTTHGLYKVQPFLDSLQSGFDAAFRPSQTQVLHEPLIDEDPVFIATCTEREL
RKRKKRKFSLWVRQCSSTGFIIQIYVHLKEGGGPDGLDALKNKPQLHSMVARSLCRNAAGKNYIIFTGPSITSLNLFEEF
EKQGIYCCGLLSSRKSDCTGLPPSMLTNPATPLARGQHQIRTKGNMSLICWYNKGHFRFLTNAYSPVQKGVIIKRRSGEI
PCPLAVEAFAAHLSYICRYDDKYSKYFISHKPNKTWQQVFWFAISIAVNNAYILYKMSDAYHVKKYSRAQFGERLVRELL
GLEDSSPAH
>21355395_DM#DNA/PiggyBac gi|21355395|ref|NP_649836.1| CG9839-PA [Drosophila melanogaster]
MSSSGRKRKQQLKPRQDDHRSPVKRRSVDIKSEPLDGYPALADYDLSTADIKPDLTELQLQLVAEQQAASNTIRLELEQQ
ESDSDEDGYSELDYQAEDVFCQDDMDDYDPDWSSQQTGSRLLFKFPIQQSGLKFGQRFQGPQHYFNQVLGNRSKFFSSLA
QSCNLKGGELKSNPTTAEEMEIFMALSLLMCDLKLEHLSDYWSTNMFYGLVGFSGKIPLERYQQLLHCLNFDAPQLQAGR
AKVKNSLLLDFINERMEEIYICGQQLVLNEPITLWKGALRYQDELPNKFRTNALLLHMLTEQSGLVVKILPEIVRKEDAP
AWVRNSRQLVEHRNKIVLKLMEGYHGGRTVYTSKFYGSYGLAQELAKKSTYCTGLLDRNRYGNSKALVHQRLDSNSISTS
YATSLMMAKWRRRAKSLYCFSSDCLAIYSKEMAMQKTNAKPKLIQELEFQLRPGNDGRHHLIHYQAACKELKANIKLTIF
LLNILVYNAYLLYFANGQNARVGHLKSYSEFRVIIIKSLLREEVTNEPVTSIQKPETYERSKNKPVPEPRLKTILHEPML
IQQNGKPAKKNCRYCHKGGMLQFSRYMCNTCPDKPGLCQEPCFLLWHEQLKKVIRQTIGRSE
>39645706_HSgene#DNA/PiggyBac gi|39645706|gb|AAH63785.1| PiggyBac transposable element derived 2 [Homo sapiens]
MASTSRDVIAGRGIHSKVKSAKLLEVLNAMEEEESNNNREEIFIAPPDNAAGEFTDEDSGDEDSQRGAHLPGSVLHASVL
CEDSGTGEDNDDLELQPAKKRQKAVVKPQRIWTKRDIRPDFGSWTASDPHIEDLKSQELSPVGLFELFFDEGTINFIVNE
TNRYAWQKNVNLSLTAQELKCVLGILILSGYISYPRRRMFWETSPDSHHHLVADAIRRDRFELIFSYLHFADNNELDASD
RFAKVRPLIIRMNCNFQKHAPLEEFYSFGESMCEYFGHRGSKQLHRGKPVRLGYKIWCGTTSRGYLVWFEPSQGTLFTKP
DRSLDLGGSMVIKFVDALQERGFLPYHIFFDKVFTSVKLMSILRKKGVKATGTVREYRTERCPLKDPKELKKMKRGSFDY
KVDESEEIIVCRWHDSSVVNICSNAVGIEPVRLTSRHSGAAKTRTQVHQPSLVKLYQEKVGGVGRMDQNIAKYKVKIRGM
KWYSSFIGYVIDAALNNAWQLHRICCQDAQVDLLAFRRYIACVYLESNADTTSQGRRSRRLETESRFDMIGHWIIHQDKR
TRCALCHSQTNTRCEKCQKGVHAKCFREYHIR
>PiggyB_SM_tp#DNA/PiggyBac 537-1369, 4598-5628  (Splice acceptor forced; based on homology to other PiggyBac transposases like Pokey_DP_tp and 47209776_TN) [Schmidtea mediterranea]
MRPEEMKRILKRLENGEISEDDSTDNEDDIDYYSSQRDRLMELEDEEDVGNFPTDPNLDADPPAANVDTDMQHNLETVER
SPTPTTSSQNNLQTAPFNSRNLVWRVKNMDIVQNAFQFAGNTEYSQEIMNLDTPFQFFSYFFGEEILRFLVDESNKYAFQ
KNPNFTEPVTVLELRKFIGILIFTSVYHYPSVRSYWSNITKFEPIAQTMNRNRFDKIRQIFHMNDDSKHLPIDHPQHDRL
HKVRPVIDYLNKKFITVPFEHRLSLDEQMCSTKIKHFMKQYLYKPHKWGFKLYVLCSLSGYAYSFEIYSGAKDIDRLPGE
PDLGAVSNTVIRLLRPVPRHVNHITYFDNFYTNIPLLHYLTNEGIYCLGTVQRNRLGKSCKLPEKREIMKSNVPRGTYHE
NVASHEGQEFSATSWKDNKQVLLLSTYVGAEPADTITRYEKKLKANVQVSCPRVIKEYNAHMGGVDLMDSFIGRYRIRIK
SRKWTMRLFYHLFDMTVINAWVLYKKVNTVKGKLQKNIMKFADFRTELADTLCRYQSHSKNKRGRPSSNSRQDTTVPSKR
PRTGVQVLPSTDVRCDCIGHEKSFMDSRNKCKFNNCRKLTSWFCKKCKVSLCDNKNNQCFALFHA
>AVPB1_tp#DNA/PiggyBac 170-1672 (1 frameshift) [Adineta vaga]
MTWFSIPSHASKTTFSNTATENSGLTEFSENITSVEDAFLCFISEEKLNKIMVYSNIEGNHNTASNGERKPITLIELKAF
IGLLLLGGLMRKSKKNIKSLWNRSPLESPIFRATMSRNRFETIISSIQFDNKTAREERKRTDKFAVSREIWTDFSRKFKE
MLQPWIAWYNRTAFGISREVSISSIYPSKPDKYAIKFWFCVDVNSYYIFDAFPYIERQPNEHRQRFVGPNVVLELMKPMY
GSNRNVTIDNFFTSIHLAKELHSGKLTLVGTLRKNKPEIPIEFQSNKNRDVGSSIFGFSDNLTLVSYVPKKNKAVILLSS
MHHDSKVDIGTGKPNIVLDYNKSKGAVDTIDEMCHKYSVKRGTRRWPLCVFYGMIDAAAINAMSLWKKKNPNWNANKKYK
RRLFLEELGTLLTSYLLDFRIKNSSTLHKDIQNALVRFGYPRIETELETFVTDSARSKRKRCSLCDYSSDRKVSNTCYKC
SEPICKQHSMKRVFRINCSK
>14210514_HSgene#DNA/PiggyBac gi|14210514|ref|NP_115896.1| PiggyBac transposable element derived 1 [Homo sapiens]
MYEALPGPAPENEDGLVKVKEEDPTWEQVCNSQEGSSHTQEICRLRFRHFCYQEAHGPQEALAQLRELCHQWLRPEMHTK
EQIMELLVLEQFLTILPKELQPCVKTYPLESGEEAVTVLENLETGSGDTGQQASVYIQGQDMHPMVAEYQGVSLECQSLQ
LLPGITTLKCEPPQRPQGNPQEVSGPVPHGSAHLQEKNPRDKAVVPVFNPVRSQTLVKTEEETAQAVAAEKWSHLSLTRR
NLCGNSAQETVMSLSPMTEEIVTKDRLFKAKQETSEEMEQSGEASGKPNRECAPQIPCSTPIATERTVAHLNTLKDRHPG
DLWARMHISSLEYAAGDITRKGRKKDKARVSELLQGLSFSGDSDVEKDNEPEIQPAQKKLKVSCFPEKSWTKRDIKPNFP
SWSALDSGLLNLKSEKLNPVELFELFFDDETFNLIVNETNNYASQKNVSLEVTVQEMRCVFGVLLLSGFMRHPRREMYWE
VSDTDQNLVRDAIRRDRFELIFSNLHFADNGHLDQKDKFTKLRPLIKQMNKNFLLYAPLEEYYCFDKSMCECFDSDQFLN
GKPIRIGYKIWCGTTTQGYLVWFEPYQEESTMKVDEDPDLGLGGNLVMNFADVLLERGQYPYHLCFDSFFTSVKLLSALK
KKGVRATGTIRENRTEKCPLMNVEHMKKMKRGYFDFRIEENNEIILCRWYGDGIISLCSNAVGIEPVNEVSCCDADNEEI
PQISQPSIVKVYDECKEGVAKMDQIISKYRVRIRSKKWYSILVSYMIDVAMNNAWQLHRACNPGASLDPLDFRRFVAHFY
LEHNAHLSD
>ISL2EU-1_ADi_tp#DNA/PIF-ISL2EU 147-1954 via genewise with IS4EU-2_DR_tp, 1 intron (445:716) [Acropora digitifera]
MTDTFSTQDTPPSSSKRRRRHCAAFSCANSYYDAKGNATGLHFFSSPKDVxRRNRWCNLIKRQHGKDxFFVTKSTFLCSE
HFRKEDIRKTLAGRWELVKGAELSQFNWSVAKKQRKLPAERVPVATVTTQEESLEVEQELFDQEVEATVSTVNASSPSPA
QEESDVLKLQWEMELLQVQLADLKEKLREVEKERDILLERQFSMDKIKDDDSAVLFYTGFPNYGALISFYNFIEPKLTKM
QYWKGEKLLKEQQSYQMDDNRNEPGPPRKLSYLDEFLLVLMRLKAGLFVQDLADRFGISTSLVSRICITWINLLYVELRD
LFPFPTQELVRKNMPQEFAQYATTRIILDCTELFIQRPSAMLAQSETWSDYKHHNTWKLLVGVTPNGQVTFLSDLWGGRV
SDKQITRESGILDLLEPGDNVMVDRGFDISNIVPDGVSVNMPPFLAGREQMTAAETEETMSIASVRIHVERAIGRIKTYH
ILDGTLPNTLSPYATQIATVCGLLTNFLPPLL
>MtPH-M-3-Ia_tp#DNA/PIF-Harbinger 2391-3677 via genewise with Harbinger_tp, 1 intron (3142:3216) MtPH-M-2-Ia_tp very similar. [Medicago truncatula]
MNDWNEQSDHIRDQDEEDDDIFQQAILVSALVGEYAINHLCKEPCRTSELTGHSWVQEILQGNPTRCYEMFRMEKHVFNL
LCTKLVKLGLKSSNRTTVEEMVAMFLVVVGHGVGNRMIQERFQHSGETVSRYFHRVLHVVLKLSIKYIKPEDPTFHDCHS
KIKNDQRYWPFFKNAIGAIDGTHVSCVVSGSEQTRFIGRKGYPTQNVMAVCDWNMCFTFVFAGWEGTAHDARVFDQALTN
ANLNFPHPPPGKYYLVDSGYPTPIGYIGPYRHERYHLPEFRRSNGFANHNEVFNYYHSSLRCTIERTFGVWKNRFAILRR
MPNFKFETQVQIVVATMAIHNFIRRKPEIDIDFNVYEDESTIIHHDDSSSNLDQSHVLNVVSSSEMDRVRNIIRNEIIEH
RQNN
>ISL2EU-2_HM_ex#DNA/PIF-ISL2EU 2461-4191 R  [Hydra magnipapillata]
MDYDTVCSMKVEELKSYLRLRGLKISGKKEILAARVYCAMENNVTPIKTAEEVEHDILTEYKKKLFINGVELPDPFKLSN
GWLSEDEGLTCWPTLLYPDIYNYLLFNPAEIASKDLSDYKTCKAYSYFKCGWLEPLFYHQIGIESEYCYLKGNCRKSEKI
NDPFHKLWIIINKKTAKIISAHCTCLAGLSQTCNHVAASLFRIEAAVRNGLTNVACTSSKSEWLPNRSIVAPTKICDLKF
DRDEFGQRGRKKRSLVSNEKRNYSPLVNCDIKLLNLTDIAKAIETVAPHSIITSAVPKPEIYYMEELIVFENVTKPTILT
MDDIIVMSDNKFSFCENIKTNMTQKIITDIERLTMGQNTNKLWFNFRKRVITASKAHDVLKKIKKINMGIKVDMWSLHQS
ISGLTFVNPDIPALKYGRAMEVEAANQFFEVMKSFHQNLTVNECGLFLDVEMPYIGGSPDRIVRCSCCPPACLEIKCPFS
INHTSPQDPNISLPYITKKLNEKFVINKKHRYYTQCQVQMGTAKMINCYFMVWTAHGYIIDKIAFDEAGWLSMKVDFFKY
YNDHYLNTVFVDFTIN
>ISL2EU-5_HM_tp#DNA/PIF-ISL2EU 172-1743 [Hydra magnipapillata]
MGGGDHCVVQNCNNDRRYPNKYVIKDHINSFNGSLQLKFWRCKDAKMLPKWNSKIGLFRSHFRVSLNSPVCSNHFKMGRP
TNIYPYPTEYLNGYDNELKNRKSPLKRSSELNKKKFVAKLSDNHYQNEYNHDQNIINHDKNNDYHHQNENTQPMDIHYDH
DYALPVVPVSVSLEKDLKILQNTPKRILKKPLLLKHRKRLLSKFSLIPQAEFTWNRLSHSDRLIKFYTGCTKKVFMFLVS
KGKKKYENVCYYKGKPSQSFKFRSENKKKPGNKRTLTIEDEILLMCMKLRLDLAIQDLAFRFSISNSQCSSILTTWITYF
GNELKPLLLWPTKEANLLYKARHFSGKLHNVEGIIDCTEQKIQKPSNAKAQYQTFSTYKSCNTLKKLVVTTKTGSFSFIS
KAYGGQASDRHITEDCNVINMFSEGSVCLADKGFNIQDLLLKKKVVLVCPPFKKKGLHFTRTKVLSAKEIARSRVHVERS
IRRLKEFKICKNELSLTMLDLIDYIYIICGALSNLQPSIVKEFI
>ISL2EU-2_HM_tp#DNA/PIF-ISL2EU 124-1710  [Hydra magnipapillata]
MKVNCAVIGCTNSSYKLEKLKNKTCFQHEGKILSECGCELPFRMFCFPSLKRNSEKRKHWISQLRREGKKKGSAWEPGTA
DRVCSDHFVDKIPTVMNPNPTINMGFDQPVQKKARRTLLKHPITSLHCSNKMQPVEPLLTEKSIVTKFPSVSFNADVSSP
ILSDHTYSMSLPLPNKCTSCEYKSSLITSYVSKVNSLTNQLKKLKIKQTVKSKQKFSWRLVNNDKKMNFYTGISSIAIFN
VIFGLLKPFLPSIRYWRGPKHSRSKVKQLKSVSKCKLLSHREELLMTLMRLRLGLLNEDMADRFGISKSLCSNTFTTFIR
IIANILGQAIIVWLPSEVIKKNLPQSFVKAKHHKCRVILDCFEIFIERPKSLYNQAVTWSDYKHHNTVKVLIGIAPNGYI
TFLSKCYGGRASDKFITSDSGFYDLLERDDEVMADRGFQIREELLFRYCSLSVPPGARVKSQMTASECKKTTDVANLRIH
IERAINRIKTFRILKNVLPISMLHHMDDIILSCAALCNLKPALIKKIV
>ITmD37D_Ele6_tp#DNA/TcMar-Tc1 160-1173  [Aedes aegypti]
MTKWQRIRDLSHAQMSQKDISIAVGVSRWTVKRVLDREKKGQLSAKVATGRPRSARVPRIVAAIKRKIRANPVRSMRKMA
KEHGISDFSVRKIVKDDCGAKSRARKKTHMITNRIRELRVERCKKIMNYLKRKKTVILFTDESMFTVDPVSNSRTDRYIS
SLPVKDVPDEHKNVFLTKHPASVMVFGLVASDGKKMDPVFIPEGDKVNTEVYIGILSKHVLPWIKEQYGPNPNVVFQQDG
APCHTSNRTQKWLQEHLPFWAKDMWPPSSPDLNPLDYSIWRVMKAKACSKRHPSTASLRQTLTRTWREMDPRYIIRTCRA
FRKRVEAVIAANGNSIDD
>ITmD37D_Ele1_tp#DNA/TcMar-Tc1 55-1221  [Aedes aegypti]
MYIFCIGIGVSFSFIHTLPNVRGVDILLVVVRLLRAMKEYRDFVIKRFLNGERPGDIFRLLKSHGVKRNFVYTTIRRYRE
TSSTNDRARSGRPRSARTPRVIKIVRERIRRKKNRSIRKTAADLNVSIGTAHTILIKDLGFRPYKKRKVHGVSEATSKKR
LDRAKRILSRHAGQEFVFSDEKLFVLQQPHNVQNDRVWAPSRDSIPESNINIPRFQSAASVMVWGAVCKRGKLPLVFIEK
NVKINAAYYKTEVLEKVVAPSLRSLYGDEHYVFQQDGAPAHTANVVQAWCRDNLTDFLDKTLWPPSSPDLNPLDFFVWSY
MMAKLNEYKVSTLDHFKTVILKIWDEMPMQSVRAACDAFEKRLKLVKEYKGGGHSKRNVVNVPCKHSFQ
>Mariner2_AG_tp#DNA/TcMar-Tc1 624-1625  [Anopheles gambiae]
MGRSAHSTQQQRLDIKRLSAAGYSQRKIAEILGRSKTFVYNALHSTGTKIPTGRPRKTSARDDARMTRLCKADPFKSARA
IRDELQLSVSDRTVQRRLFENNLVGRNPRKVPLLRRCHVQARLQFAREHYDWAGENLNKWRNVLWSDESKVNLVGSDGKR
FVRRPKNTAYRPQYTLKTVKHGGGNIMVWACFSWYGVGPIFWIKDIMDQHRYLNIIQTVMLPHAEWEMPLKWQFMHDNDP
KHTAKAVKKWFVDQKIDVMNWPAQSPDLNPIENLWKIVKAKLPPAGSRTKEKLWKHIENAWYSIPPSTCKSLVESMPKRM
RAVIRNNGHATKY
>Mariner16_CB_tp#DNA/TcMar-Tc1 163-1200 wised is gi|39592626|emb|CAE62240.1| xtended with estwise to Mariner13_CB  [Caenorhabditis briggsae]
MALGTVPSRIFEKFRIISKIGSVYKPTLEPFPITLSLHEVMRASPHRQTIAKLFNDGISTGDIARRLLLPRATVYRVVXQ
LKDRGHVLELKKSGRPRTVNTRRTRGIIKKRITRNDAVSMNQMASSLGISRQSVQSIVKKDLGLNSYRLLRGQYLTEQSK
KNRLEKAKKLLDALKVRRLSEVIWTDEKIFTVEPLPNRQNARQLLSKDEAKSPKRRLAYKRLFPKSVMVWAGLTSEGKVP
LVFIDRNVKINSDVYQKLVLMDVLRPWVTSHFGQQPFILQQDWAPSHGSKSTKAVLDAHFPGYWGKDMWPASSPDLNPLD
FSVWGIFGGKGDGSIAPKVFATVDSLKAALLKVAWDSILTXDYLRRTVASVPARLKACIKAEGSNFE
>Mariner8_CB_tp#DNA/TcMar-Tc1 339-812 wised with Mariner14_CB  [Caenorhabditis briggsae]
MSWDLLPTDAGKASIGAVGAAGWTKKLSESNXIIHTVISTVFSSENXRKKTGSAQILPSRSQPSTSTVVLNSLKSCNGIN
QELKLEVIKWTGXRCLKDDPGIKRAIMVPAPTPTDDHKVRCLNFFQKCIGSNWGKVLKFNMIYQNNLSMNVFHILKKY
>BARI1_tp#DNA/TcMar-Tc1 341-1339 wised with BARI_DM and Tc1_FR4 [Drosophila fruit fly genus]
LVDLICKMAKTKELSVEHRAEIVTKFKAGTSASKLAKLYKISAKTVYNLVKKXDTLANLENKKSTGRKLALNPRDCRHIR
GVVLINPTISTVKIAAASKNLIGKHIISDSTRCRMKEVDINTYVVRAVVDITPRNKEKRLAFALEYKEKPLEFWFDVLWT
DEVAFQFQGSFSKQFMHLPKQLKGNAVQPINRFGGGTVMFRGCLSYYGFGDMVPIEGTLNQTGYLHILNEHALTSGNRLF
STNDWILQQDNVPCHKGRVPTKFLKDINQAAQSPDLNIIENVWAYVKSQKTFERDAQRDETIAXITEIWSKLXRSIPAKL
QAVIDAKGGVTRY
>SMAR21#DNA/TcMar-Pogo 377-1969  [Schmidtea mediterranea]
MSRNPKSKERNELSLDKKIAVLNHLKEKCSSERKTAELFKISKTAVNRIKKQEFEIRKRFEHENSNLCRKRKKNCFDEIN
NAVLIWFQKMRSINARISGPMIQEVALAFAERFGITTFQASNGWLARFKNREGISQKILDGESNEVSTETVTSFIERFHL
LTEGFEEKNIFNADECGMMYRALPNKSLVQKGDQCKNGKQSKERITVLLAASNTGEKLKPLVIGKYENPRCFKNIKKGNL
PITWRSSKKAWMNSSIYLQWLNDLNNEMKKANRKILLFVDNCPAHPPIDELSNLTVKFLPPNTTSKLQPLDQGIIKAFKG
YYRKNLMKSIIIDNIEKDIKEFTLSINILSAIKWIDLAWKNVSTKTICNCFKKAGFTKFNNGFLAVNENVINDLIDDDFD
NINFNNVISSDHEKWNEYLSFDDDLATCEEICEENLIDDVMEELNEKNGVSDEPILDANCETFIQEQEINFNEAKVYSRK
LANFFLREIPDSVSKLYEIEEHLNNYGLTSMIKKNNQTKIEMYFKTSEVI
>SMAR20#DNA/TcMar-Pogo 269-1755 via tfasty with ATHPogo_tp, 1 frameshift.  [Schmidtea mediterranea]
MSEKQKKRKDLTLKEKVQIIENYDKLPKMGQRNASVQLKISQPLLCKILKNRDEILRGAKLNENLSCMRKRVGKDAQVES
ALKLWFTHVRENDARVDGPLMRQKAEELATRMGKDDFVATDGWFNRWKIRENIVYKRAHGEQKDSDFSAAEAWLIEEWPK
IIAEYSPENVYNADETGLYYRALPEHTFMLKNESSKGCKTSKERLTVLCCASMSGSKEKLLVIGKSANPRCFKGVKQLPV
DYYANKNAWMTTLIFNEWLLKWDNKLNHKIVLLVDNCTAHIVKVNLKQIKVIFLPANTTALIQPCDQGIIRTLKAYYRRE
MRSRVLENMEDSQKLTANELAKKTNILDALHLLAMSWKSVSEKAIKNCFSHGGFTTEDLESEEIVENPTDLTDEAFEEWM
LIDQNIPIAEKLTDSEICDTVTQTSPASIEDEEEDEDESQTNNKPPTACEIRNALQILRLGVQHRSSEFHKQYEYESFIN
SLLRKNTRQSSLHDFF
>Sagan-9_TMe#DNA/TcMar-Sagan 400-2739 via genewise with Sagan-10_TMe, 1 intron (1337:1402) [Tuber melanosporum]
MNTEISEKNMQIEKRHVATRExxRKHREKKFAKVVGPKNPxMSGKERMKKYRLRKQEVRSLEIIANNQKSQGLAEKKQYP
SYERTKRYRQRxRxDNGYEKxVPLTARECSRRWYAKKQQVRIQNLVSSSITRHITSSPPQSISxVDSEWQAHGLASRRQA
YQDWPRLAGPGHEFRQEILQSALQKLKREIKVNGRNPAAGGMGLQLNWNVQLYTFxKLQLRAEKDWKSAELKRHSSDPIT
RRKTRKELALQVANGGGWSIAVMKHILQQEVEYVRYGKLPIPKQGXHVKVASWLTDEGTVLAMREYMSVAGEGMDSAGLA
KAVTNYWTITYGNEVSQPGTQLPMITTAGIHKRIKRSLSSWSARAWLSKLGWNWKEVRKGVYKDGHERADVKKYRNEIFL
PFMQDLKPRICEWDENLTIIPKTYVPGIKPVVLITHDETTFNSNDGRKRIWVHDDHAPLRKKGRGQGLHVSDFLTPIGRL
GRGDVCEIMKCGGDIWWMGELLLKQLTEKAIPIFEQSFPDCQALFAFDNAKSHQKYAADALWTGNLNLIPGGLNSVPMRD
GWYKKEGDPTTIYQQKMVLPDGRLKGLKIILQERGLWPANQKLLTQCTIQGEKPRSRKPNPACRYASNSNCCARALLASQ
PDFQAQKGELQEVIEAAGHLVIFYPSFHCELNFIEYFWGNAKVYARANCEYTFPALVRIVPEALAQVSDKLIWKYYQRVL
RMMEAYRQGIVYDSDDFKRHVFTRYSSHRRIAESELYM
>27901556_AO#DNA/TcMar-Tc1 gi|27901556|dbj|BAC55905.1| transposase  [Aspergillus oryzae]
MRSFGTEISGNRRLNQELSTETRAAIISGLENNISPTQLAKQFNVCRSTIYSTKKRFQHHHTLKSKPRKGRPQKLTFAEK
RYIYLLARRRPKIGYKALIASSGFSISHSTIKRVLRTFQLKKWKAKKRIPLRPDVAKKRLQFARTWANSTYLSEMMFSDE
CSVQRKSNNSTQYVFRFSNEAYRKDLVNLTNHGKDISQMVWGAIWIGGRSELVVLERDELSPRGGYSTKSYLACLEKGLL
PIYKPGSIFQQDNAKIHVSYEAQDWLERHGIWVPDWPAHSPDLNPIEHLWNLLKKKLLELYPELFLGGRSQIDWTQFRES
IQAAWWAIPQERIDRLIRSMPRRLQAVRLARGWYTKY
>Sagan-11_TMe#DNA/TcMar-Sagan 370-3386 via genewise with Sagan-10_TMe, 4 introns (611:1094, 1261:1301, 1517:1781, 2745:3015) [Tuber melanosporum]
MPRLSKARLAQLQAARNKRASIHSGNLLVNSESRILIDIVKGRDAGWVGQDDGLSEESDNEEYSVSDSESDSEYDINSDE
VFKMSREHARLHMRYRSGFAMNPYVNCIFYCSIKPRKESTLESKDRIGQPLNAMKWVRRELATEVAKSYFRGAYTGRQIV
KWENAWMASRKIPESRQGVHRHYGLCTLLYDEDILLVAREYIQKAGINISDEFETMIHKTGIRDAGHGSDIDGNEIRERK
GFRVRTARNWLHRLGLNWRQIRKGVYFDGHERPDVLAERERFLDMLDKLDSFLVQFDIEGNIIPKEYPPNCFPGSPISQP
IILITHDESTFNTHDGRRYAWHAKDMPILQPKGRGKGIMVSDFLLPSARLSASKLSASARLELGIPEFATKLFEFGTGSE
GYWGGDEIVQQVTDIIIPIFKAVYPGYQALFLFDNATSHSAFAEDALRVQHMNLDPGGKQSKMRAGYINGDVTNIQLMVN
ENQEPKGIRQVLQERNLWHKDLRLECSKPLCGPCGRRKKCKICIAGKVYCCARRILSLQADFLNQRGKLQEDLEAQGYLV
AFYPKFHCELNWIEYYWGHAKRYARSNCDYNIESLRRVIWEALADVKNSTIAGFYSRCQRRITAYRAGIPYASTEFQVFT
SHRRVVYNEEE
>Mariner-1_DR#DNA/TcMar-Tc1 285-1272 via tfasty with Tc1-2_Xt_tp, 3 frameshifts. [Danio rerio]
MGKTADLTVVQKTTIGTLHKEGKTQKVIAKEAGCSQSAVSKHINREVKGRKRCGXKKCTSNRDNRTLERIVKQNPFKNVG
EIHKERTAAGVSASRTTTHRRXQDMGFSCRIPCVKPLLNNRQRQKRLAWAKDWTAAECSKVMFSDESKFCISFGNQGPRV
WRKSGEAHNPRCCLRSSVKFPQSVMVWGAMSXAGVAPLCFXRSKVNAALYQDVLEHFMLPAADQLYGDADFIFQQDLAPA
HSAKATSTWFKDHGIPVLNWPANSPDLNPIENLWAIVKRKMRYARPNNAEELKAAIEATRALITPEQCHRLIDSVPRAVI
XAKGAPTKY
>Mariner-16_DAn_tp#DNA/TcMar-Tc1 128-820 Fragment [Drosophila ananassae]
AEITREKKLLRFTRAKELLRLAESGQFPNIVFSDEKIFTIEQFVNSQNDRVYLTDRSYENLSHRLATRRQHPPQIMVWAA
VTADGRSPIVFIEPGVKVNAQYYRESILEVALKPWADKHFGGRPWTFQQDSAPSHKARVNQEWLKNNVPNFITSTQWLSN
SPDANPMDYSLWAILESKVRTKRYTSLDALKKAVVREWAKIPASHIRAACDSFLDRLKAIVKAKGGHIEQK
>Mariner-14_DRh_tp#DNA/TcMar-Tc1 382-1405 via tfasty with Mariner-1_DK, 1 frameshift.  [Drosophila rhopaloa]
MENKRKESNEAQRKIVLHLYNEGKSYGEIANIMEMSRFSIRSIVQRFKGASSLANAPRSGRPRILTDRERSQLIRKVKVD
PKITSSQIAAEVKNEFGKEVHPMTVRRALHEANYHSRTARRKPLISDVNKKRLAYAKDFLGKPIEYWDQVLFSDESKFNI
FRSDGRQQVWRKTNTALDKKNLAPTVKHGGGGVMVWGCMSSAGVGELVFIEGIMDKAYYLNILKDNLKKSASNLSMPNSF
TFMHDNDPKHTATDVRMWLTYNTAHVLPHPPQSPDLNPIEHLWEELDRNIRKHDISSKNYLKKALMEEWVKISQEVTKKL
VHSMPRRLEDVIKQKGLPTKY
>Mariner-16_DK_tp#DNA/TcMar-Tc1 329-1318 via tfasty with Mariner-4_DBp_tp, 3 frameshifts and 1 stopcodon. [Drosophila kikkawai]
MDLGTSLSHKEQIxIQSYIDCDLSVANIAKKIGRSRKVVYNFIKNKQNYGKNMKGRKSCVLSDTDKRAILREASNSHDSV
SKIRENAGVDASKTTVWRVISKAKHLKRLKLKKKPPLNPKRKEARLTFCRVNMSWCNERERVVFSDEKKFNLEGPDGCNY
YFHDLRKETHQLERLHSRVGGVMVWGAISYHGTCELQFLSSNMNAKAYLNVLEKAFPPLENFFNNLPWTFQHENAPIHTA
GIVKPFLKDKNVETLNWPPYSPDLNIIENVWGWLARKVYESGKQFSTKEELIDAIQRAWATISLDYIKSLYDSMPNRIYE
VILNKGGSTHY
>MdmaTa_tp#DNA/TcMar-Tc1  Wised translation of gi|13649770|gb|AF315724.1| transposon MdmaT1a nonfunctional transposase gene [Musca domestica]
GSLARRQGSGRKKTVTSANMVRKVKKQLDRNPRRSGRKMARELNXSQYPIRQLLKHELGVKPLKFEKVQELTPQQKENKL
KRAKKLPRLAESGELPYLVFSDEKTFVVQLFVNKQNDGVYXPKRSAENVHLRLNPRTQVSAMMMVWAAITADGRSPLVLI
DRGIRLNAEYYRXNILEGVLKLWARKHFGRRHXTFQQDSAXPHNKIVTKLCSLPHFXAQWPPKSQDTNPLDCCVWSILEN
KIGTKKYQSVDHLKQALRREWAKIPQSNIRAAFD
>Mariner-22_DF_tp#DNA/TcMar-Tc1 359-1376 via tfasty with Mariner-10_DBp_tp, 1 frameshift. [Drosophila ficusphila]
MGKRTTIEQRELVLRHHKNGVSRREIAKIVNIPDGTVKAIIHRFVFENRVEDKGRKAPNKIFTETDERQIIRKIKKDPRI
SAPKLAHEMQDITGKKFSPETVRRVLREHDFNGRVARKKPFINKKNRDSRFKFAKEHIKKDIGFWNDVIFADESKFNIFG
SDGQTYVWRKPNTELEDKHLKATVKHGGGHVMVWACMSAAGVGRLQFIESTMDKMVYLNILKDNLIQSAEDLGIKESFRF
YQDNDPKHTSGIVQTWLIYNCPHVMKPPAQSPDLNVIENLWSILDTNIRKRQISNKNDLKVALMEEWAKIPPETTKKLVE
SMQKRLKMVLDQKGGHTKY
>Mariner-12_BM_tp#DNA/TcMar-Tc1 334-1371  [Bombyx mori]
MDTTPEKAAQVVALIEAGQNQSAVARQLNISRYSVRRVYQRYRETGGFERRRGSGRARATTQRDNRFLVTTALRNRRLTA
VELAQQLQQVREVVVSRWTVRRRLAEGGLTAHRPANGPKLTPAHRRARFRFAQEHVNWTADQWKAVLFSDESRMCLHDND
GRGRVYRRRSERFSQCCITERVAYGGGSCMFWGGISLERKTELVFIVGANIRRQTRGLTSQRYIEEVLQEHVVPFGRLIG
SNFLFMHDNARPHTAAIVRQYLQEVNVPVMEWPARSPDLNPIEHLWDELKRKIRGRNSAPANLQELQNALKEEWDAMPQD
FIRNLIESMGNRCEAVIRARGGNTCY
>Mariner-6_DBi_tp#DNA/TcMar-Tc1 346-1364 via tfasty with Tc1-2_DM_tp, 1 frameshift. [Drosophila biarmipes]
MGKTAELSLVTRSLMVAKFNAGIAVKDIADEFKVSRQTVHYQIKKFKKHNDLRNLRRSGPKRKTDLSEDRVLVREFKKNI
FLKPQSAADQFNLTAKTPISERTVRRRLKESDFKTYKVKEVPYITNANKLKRLAFAKEYVQKPKEFWRSVLWTDESSFEY
NSSKNKFVVRLPMEQRQKRRPVCQKVSHGGGCVMFWGCVAYNGLGDFVPVTGSMNQGQYLRILNDNAFTSGDRLIGQSFI
LQQDNAPCHKAKMITSFLKDVGVTTLDWPPQSPDLNIIENVWSLIKRKRTVSLNKTREETISEVSSLWEQISPEIIQNLI
DSVPGRLEKVIKTEGNYIFY
>Mariner-5_BM#DNA/TcMar-Tc1 154-1194  [Bombyx mori]
MEWGVKENRIAVIALHKVGMEPSVIFQTLQKLGISRMFVYRTINRYNNTSSVEDQKRSGRPRAVRTTKAVNAVKARIRRN
PIRKQKILSREMKIPARTLSRIIKQDLKLGAYRRYTGHALNQSLQLKRVDRSKRLLSRYAGERHRNILFTDEKIFTIEEH
YNKQNDKVYAHSSKEAAQVVGKVQRGHHPASVMVWWGVSYQGVTKLHFCEKGVKTSAKVYQDTVLDHVVKPLSNTLFKNI
PWTFQQDSAPGHKARTTQAWLETNVPDFIRAEDWPSSSPDLNPLDFKLWSVLEDMACSKRHGDIESLKKSLEQAVAKFPL
ETVRKSIDSWPNRLKACIKAKGGHFE
>Mariner-6_DRh_tp#DNA/TcMar-Tc1 391-1425  [Drosophila rhopaloa]
MPGARLTFEVTQLIYYNHQLGKSVAELVEMFRVSRKTIYNVLNRAEKEDRLEAKCGSGRKKKIDERADRLIMRKVRQNPQ
ISTRTLAKELEEECGTVVSHETVRQLILRNKYSSRVARKKPLLSKINVEKRLTFAVNMSIQPDNYWDDVIFCDETKIMLY
YNDGPTRVWRKPLTALDQRNIIPTVKFGKLSVMVWGCISSKGVGELAFIENTMNAEQYLSILKTNLRQSADKLGLIVDNK
PKFKFYQDNDPKHKELTVRTWLLYNCQKVIDTPPQSPDMNPIENLWVYLKKKVAKRQPKNRAALKAAVLEEWHKIPLEYD
LQKLVSSMKNRTRLVVKAKGGHTKY
>Mariner-10_BM#DNA/TcMar-Tc1 420-1484 [Bombyx mori]
MEEYSSQHIADIHFVYGLCNGNANRAVTEYARRFPTRRTPNAARTFIRIHLRLAENGIRRRANERTRVLSPQDEQEILRL
ITQDPSLSIRLVACRLNLTKWTVWRVLKREGLHPYHFRRVQEILEPDYTRREVFCSWILRKTRSNPNFLKRIMWTDEAXF
TRSGYTNHRNEHLWLQENPHAIRPSSFQHQFSVNVWAGLINDVLVGPIILPETMNGPRFLNFLEXDFFDALLELPLAYRN
RMILQLDGAPAHFALLVRNHLNAQYSPWVGRGGTIAWPPRSPYLTPLDFXLWGTMKQKVYVNVPNTREELIANIIRTGNE
LKEDRAMIQRSTQHVAIRATACLQRRGGHFEQFL
>Mariner-8_NV#DNA/TcMar-Tc1 134-1237  [Nematostella vectensis]
MSWTNQQKIFSLETYFATKSYQSAQIQFRKRFHCRNFPSKSTIVSWIKKFREHGTVVDLCSKATGGTYSGRKKSARTEEN
IAAVRDSVGRSPRKSVRRRSQELGMTRESLRRVLTSDLHLYPYKIQIKHKLTDADKEKRVTMCEWFCNVLENDENFLENV
WFSDEAHFLLSGHVNTKNNIFWGSKVPEEVLQRPLHSVKCTAWVAMSKHGIIGPFWFEDDDGRSQTVNKERYIAVLNKYW
ASLGRRRGVVRASQWFQQDGATPHTANETIAWLRQRFEGRLISRRCDVEWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTI
EELKTAITAKIRAIPKEECIKVIQNFARRVQVCLQRNGGHLEHILGKP
>Mariner-3_NV#DNA/TcMar-ISRm11 626-1687 [Nematostella vectensis]
MPPRNRIPFEHRERIIRSFEDEEEDYLLVADTLGVNPSTARGIVARYIREGRIEERPRGGRNNVRVDDEMRDCLNDIIND
NCLLTLSRINQELRRRLPLKPRIHDRTVARTLDGMLFRVKLARPLPAERNRPDVLQKRVDYGNWFMNRGVVHHSVFVDEC
GYNIWTARSHGRARQGERAYRQVCGQRGRNITVTMAISPINGLVFHSAIIGGMNAQRFSDFLTQARLNLDPDEMVIFIYD
GAPPHRNPAIPGPNTELKMLPPYSPFLNIVEQAISSLKAAIKADISRPEVQAQMGDRGAARDQGLALGVFRTRLLLQALQ
RNIGTITPAKCAQWYRFMQTYLPRCLNGEVIEG
>23102001_AV#DNA/TcMar-ISRm11  gi|23102001|ref|ZP_00088534.1| COG3335: Transposase and inactivated derivatives [Azotobacter vinelandii]
MDVSRPARHDVQKKTAQAAEQQRPDVQAARQGWIEEQSGFDWRKLIFVDETAAATNLARLRGWAPRGERCRAAIPHGHWK
TTTFTAGLRLDGLSAPLVLDGAMNGPVFLAYVGQVLVPELTPGDIVVMDNLPAHKVAGVRQAIEGAGATLRYRPPYSPDL
NPIEMAFSKLKALLRKAAARTVPQLWQSIGEAIAQFVNAD
>Mariner-2_AP#DNA/TcMar-m44 433-1747 via tfasty with 52548731_arch, 2 frameshifts.   [Acyrthosiphon pisum]
KRQIIINAYKSEMNSDPTKSLRIIRQELSKELGIGATTISTTITEYNNTKKVISPCKKRVKTSLLETFEEFERNVVRRHV
HSFWFKREIPTVDKIFQVVSDDDSLPIISRTNLFRLLKEMDFKYSKRGRNSALTEKPKFCVARRRFLEQLREYRNEGRHL
YYLDETWVNAGECTSKTWIDTTIKSPRDAFLQGLSTGAVNPSGKGKRLIVLNIGSEDGYVPDALLCFESKKNTRDYHDEM
NGETFYEWMEGVLPRLKENCVIIMDNASYHSVKLDKAPTSQTRKGDIIKWLEDKGEVIDRPMCIPQLLQIVKRIKPQHQK
YVIDELAKKHNRNILRLPPYHCELNPIELAWSSVKNYVRMNNKTYKLHDVKNVLIEGVKRVDADMWKNFISHTKKEEDKF
WEIDFVVDEVLSAELESVTLTIGDTSSDDSLGTESDYFF
>HSMAR2_tp#DNA/TcMar-Mariner 126-1238 [Primates]
FEALRRIRHQFEKSPYQSNMNSAKIEARTNIKFMVKLGWKNGEIIDALRKVYGDNAPKKSAVYKWITRFKKGRDDVEDEA
RSGRPSTSICEEKIXLVRALIEEDRRLTAETIANTIDISIGSAYTILTEKLKLSKLSTRWVPKPLRPDQLQTRAELSMEI
LNKWDQDPEAFLRRIVTGDETWLYQYDPEDKAQSKQWLPRGGSGPVKAKADRSRAKVMATVFWDAQGILLVDFLEGQRTI
TSAYYESVLRKLAKALAEKRPGKLHQRVLLHHDNAPAHSSHQTRAILREFRWEIIRHPPYSPDLAPSDFFLFPNLKKSLK
GTHFSSVNNVKKTALTWLNSQDPQFFRDGLNGWYHRLQKCLELDGAYVEK
>AVMAR1A_tp#DNA/TcMar-Mariner 110-1147 [Adineta vaga]
MDADHELNMNLSRREILVLLLHEFRLGHKATEAANNICSTMGEDVLSTRTAQHWFNRFKNGNLELNDLLRSGRPLEVDVD
LLQQLIEQDPRLTLRCLAEHLGCSYVAVEKHLKELGKTWKYGVWIPHELSSHQLQHRVDACMDLMTSHRNYEWLRNLITG
DEKWVLYVNYTHRRQWLSPGQTGVATPKPDLHPKKVMLSVWWGVNGIIHWEFLPNGCTITADLYCQQLDRVAQKLNGKQD
RVYYLHDNARPRVAKLTCEKLLKLGWINVPHPPYSPDLAPTDYHLFRSLSHHLREKKFDDDNDMKMDISNFFGRKSKDFH
ERGILSLPERWRQVIDSGGAYITES
>ISC1078_SS_tp#DNA/TcMar-IS885 gi|15898916|ref|NP_343521.1| Transposase ISC1078 [Sulfolobus solfataricus P2]
MPKSRMHGIRLNKKQEEERRINAVKDVRNGMSIKDVAKKYDVSIFTVYKWLRKGDLSAKPRKGPTKLKDEEKLVRILEKS
PRDFGLNYDFWTLKLIAYILDKEFGIKYNPRSLSPVLKKLGFKYKKGKRTYVRDDNAVERWVKEQGEKLFKKIREGYKVH
IFDESYVSYINKGKGWMKVGGGIKVNPKRKRFAVVGGITISKEGITFSYSTYKKPSLNSKDIILYLRKVIKDEKTVIVMD
NARIHGNEVREFLEENGVEFVYLPPYSPDKSPAEGPWAVLKKRLYSKIYTDFETLMWDATRFLRSISKRVNDLTYSVKRC
GEPWTSILSEVFLPFKV
>37524477_PL#DNA/TcMar-IS630 gi|37524477|ref|NP_927821.1| Transposase, IS630 family [Photorhabdus luminescens subsp. laumondii TTO1]
MPIIAPIPRNERRQMKKIIQNTRDKDYARRLMAILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRP
AVWNLIPLYPLLSFLLQYSPQQLGCLRSRWSLEFFIIKINELLNIKLSISTFYRYLHKMGIVWRRAAPTLKLPDPEYHEK
MAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQQKRIVTPGKNQKHYFAGCLNVQTGKVTYADGLNKNSQLFI
NVLEELERQYCHAETLTLILDNYSIHKSRRVRDWLACHPKFNLLFLPVYSPWLNKIERLWQSLHETVTRNHGCQYMWQLL
EKVKTFLNSCPYRNSRE
>Mariner-34_HM_tp#DNA/TcMar-Fot1 82-1602   [Hydra magnipapillata]
MARNYKRKLNLKVLYGTSSKEDIKKAIEDHGKGMSIRKAADKHKVKKSTLHDHIRKPTLKKVGGQTIISKADEVLIAQML
EAVADWGFPIGRLEVRMMAFDFLKNRNGSNSFNLQIPGNDWLNSFMKRNNISGRNASNIKRSRSKLGVEMINNFFDEFER
TYESLGGIQPSNIFNFDETNLSDDPGKKFVLVRRGRRRVENVQEHSKTSISLMWCGSASGVLQPPMVVYRASNVYKGWVT
GGPQGTIYSCTKSGWFDMETFAKWFEKCFLPNVQNLNGPKLLLGDNLASHFNPDVIKLAKEHNVYFAMLPPNATHLMQPL
DVSVFGPMKRCWKHVLYEWRKQSRKTGCFPKEHFPALLKSLSLKLQDTVCQNLVSGFITCGLYPINRIKVLKRIPEYKEP
GTSTASLLNDSVTTLLMYHRGACETKKPRGNKLNIASGAVLNVVEDIETDLCFICGKDDNDENDEISEEEEEILIDWTGC
ERCGRWYHSKCLENAMSTDCIVCPKL
>51492546_AE#DNA/TcMar-IS630 gi|51492546|ref|YP_067843.1| IS630-family transposase [Aeromonas punctata]
MPILPPLPRPQRRRIHKIIHATRDKGHARRLMAILLLHEGRTITDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRA
PVLPIAKIVTLLVLLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIKDPAYQEK
MANIDAALARCDADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKHYLAGVLHAGNGRVLYVSGIKKNSSLFI
AMLEKLRHHYRRAKTITLILDNYIIHKSKQTERWLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLL
ARVKHFMDTVSPFPGNGYGTAKV
>IS885_RE_tp#DNA/TcMar-IS885 gi|32527414|gb|AAP86164.1| putative transposase of IS885 [Ralstonia eutropha]
MKCKRNSDGRAIDHHALQVMRQQAIKAVREGQTAQSVAAALGVNVRSVFRWLADYASGGQRALLAKPIPGRPSKVSGDEM
RWLAQAVRDNTPQQYKFEFGLWTLSLIRALIHRQFGKELSLSAVSRVMKLLGFSAQKPLYQAWQQDAMLVRRWEAEIYPA
IRAEAREVGARIYFADESGIRSDYHTGTTWAPRGQTPVVEATGRRFSLNMISAVSPQGEFRFMLHDGAVTGTVFCEFLQR
LMVGADKPVFVVVDGHPIHKAKLVKAYIASLKGQLKLFYLPPYSPHLNPDEQVWAHVKRQVSKRLVQDKNDMKKLALGAL
RRIQKLPSLVKSFFCQPECKYAAM
>15795189_DR#DNA/TcMar-IS885 gi|15795189|ref|NP_284940.1| putative transposase [Deinococcus radiodurans R1]
MPGWQPTQYSRAQLEERRLAALEWIERGTHRNREIAQHFGVSVHTVYTWKARLKRNGGLQATVARGASARLSATQHEQLR
TFLREGALHHGFPDDTWTTLRVTNLIGRHFDVWYHHDHVRKILRRLGFTPQMPDGRAAERNELRIASWKEQVAPELEKKG
RXEGAILVYLDEVGFSLKGVRRRTWGTRGVTPLVKLPANWEKLSTIGAITSDGRFFQNTRSGAIRSTDVTQFFRHLLRHI
QGELVVVLDNAGIHRSKATQAFVETHERLSLVFLPPYAPELNPIELVWAYVKRNALGNFCARSIVELKGRLVSAWQRLRY
IELPQRLIDSNLRRDQ
>Mariner26_CB_tp#DNA/TcMar-Mariner 188-1173 wised with Mariner3_CE  [Caenorhabditis briggsae]
GCLLFEFLKGESAAAAHRSICSVIGDKSLEYLVVRPWFNRFWNGEYSLKDKPQFDNLFSSIDADIXKALEAEPRLTVREV
SSTLGQPTTIAFHHLXSSGHREKYGQLVPHHFSDSQIKTSCDLSWSLLTRKRTFDGIHYLVSGNDKGCLXVKENRKRQWV
KVCQTPEINHKGEIREKREMLSIWWNFXRVIFREISPNCAIVTTDMYCLQLQKVFNAYRALRPEADTFVLLHDNAHLHTT
LATRQKMQGLGIKILGYPSYSPDLALTEFYLLSSLXEWLXGKRFDRRSDLKSYMDAFFVQQPPEFYARGIKHLPKRWQDV
MDHNKQYIT
>SMAR32#DNA/TcMar-Mariner 183-1203 via tfasty with HSMAR1_tp, 2 frameshifts and 1 stopcodon. [Schmidtea mediterranea]
MYKLENHDLRLLYLYEWKSKNNSVEAERNINNAFGSDTVNERTIRRWFKKFDDGEIDLENMPRGRPNIKLSEEDLREAVA
QNSTKSVRELAVDLSVSKTTVHDNLKTIGMVKKLQKWVPHELTELQKLNRLQICISLQARHRKSSFLNNIITCDEKWIQY
DNRKRSGEWLDKHQCPNQFPKPELHQKKVMLSVWWSKYGVIHYCFLKMGTTINSERYCVELEKMHEKLTISHPAIVNRKG
PIILHDNARPHVSKVTIQKLHDLGFEVLPHPPYSPDLSPTDFHLFRHLSLYIKGRKFKDLEEIKSTVITFLDFRSxDFFK
GIEKLPQRWQECINVDGSYFD
>SMAR31#DNA/TcMar-Mariner 137-1198 [Schmidtea mediterranea]
MNNFVEQRVCLKFCVSNEISCVESLKMLQKAFGESALSKTRAYKWYKEFKSGHEVVEDLPRSGRPSTSNTDENVXIIKKT
VLENRHVSLREMASDLNISYGTVQHIVVDILGMQRVAARLVPKELNFVQKDHRKKVAEDMISEAQKDPTFMKRIITGDET
WVYEYDVETSQQSSKWRLKGEPKPKKPRQSRSKIKVMLTVFFDYRGVVHSEYLPPGQTVNKDYYLAVMKRLRDAVRRKRP
ELWAENNWILHHDNAPSHKAKIVVDYLTKHSVNLLEQAPYSPDMAPCDFFLFSKLKMPLRGKRFESIEAIKENATKELKA
IPPVAYEKCMDDWVKRWHMCVASNGCYFEGGTK
>Mogwai2_EI_tp#DNA/TcMar-Mogwai 221-2534 via tfasty with Mogwai1_Ei_p1, 3 frameshifts and 4 stopcodons. [Entamoeba invadens]
MYGMTASPFNIGHVKKEEIIEELKEQEFEYFPIFKIPSEDIEFEYCGKYLISKLLDDHFNTYNDTIKKMSKTNTLTIEPL
ENLFPTQLVSSTSIKLNKNENEKRKLLYVKILIHYLGCRNAHNTANVFNVCPQTVINIYRRAMNNEDLLGQQRGPKVGQN
NKVDYHTLTLIIDELRKNNQITLKNLTKYVNEHRLEWMKEVAKIEMELGADENVINKMFKQSKLSKSTISILVQKLGWSL
KKVKRNIFDKNSEIRIQQRIVYAEHIDFIEVFKYRVAYIDEVGFNLNQRRSNGYSLIGKCCSVTLNHIRKPNITVFCMMV
PEKKLVFRITKKSSNKNFIDTVEHVFIPQFQKWCGDCFLHLILDNASIHKKQxLNLCRKYGIYVTFLVPYSPQLNAIEKC
FSIAKSYLNQVLMDDSVFNEAIKTSRNYQHFxLIAIYQDQLIMIFFSCLITASLLKITEEHTSKLHLKRAEWISRAREGV
YFDNDDTCNKKVIEVEVPVFEDQSAMHIESGTYYLATVTYLNRVNAVHVLSDYIIQVDDTNCTPSAQISIxxSVFCENTL
YQIEISPVLEDTNNIHELMTENNECSKNLVLTCSDKQDFHFHFEIDENTYSQNKIIDCDYEANKTVDTLELSDIHIINEQ
STTYISQMEIDDPGNKINWKNVRQQHYSLNSMFEYLVFFNSRSDIKELIEIIKTQRLNTLILNAFCFWTKLRNLYEWGNP
VFLFDWDNFWDGVINEERIRGQMDEIIDEDVILIPVYYAEHFMLIGVFLKH
>Mariner-1_NV#DNA/TcMar-Pogo 992-2609 via tfasty with Mariner2_MT_tp, 1 frameshift. [Nematostella vectensis]
MAFHVRFNLLFLAMAKRNRTCIDLNRKIELLNYAKDNHMHGVRVIAAKYGIGKTQVSKILQNKETILASYENNNGHIKIK
RIRTGKYANVNDAVWDWYQMCRNFNIPISGTMIQEEVMIIAERLGLNEFTGSNGWLEKFKRQHNIGQMAVSGEEAGVNPE
TVESWKERAREITRGWDAKNVWNMDETGCLWRGLPEKSLNERGMRCSGGKKSKQRNTWAFFVNAAGEKEPPIVIGRSENP
RCFKNLPNKQYFDNDKAWMRTEIMQEVLAKLNRRLKRENRNIMLFMDNGPCHPPSLKNTYSNIKIIFLPKNTASKTQPLD
SGIIANWKIHYKKRMLRFICSKVSATITASDIVKSIDVLMSIEWGKQAWDEVQESTIIKCFKSTGLYPDTEPVDDAPFEG
EDLVQHEQIDTMLAKLGAPCTAQEFLDIDANEPTCQLTLDPTRADWRDQAREILFDQDDMTQEEDETNSDDNEPDVQIVG
TKETTLTLAEATLHGERLRQFAQDKGHEELSLLFTRANDILYSLQLAGQKKQTTVDSFL
>Mariner2_MT_tp#DNA/TcMar-Pogo 321-1925  [Medicago truncatula]
MNVLKVFKPYLTHEMASHLKGVAKSTMSDQIRKELCEYKRDNPASTQKDLQRWLEGKFQLKVSQGTISNTLKRSNDYLSA
EIEKGRAEIKRHKPAKYPDMEKVVYEWFLQHQERVNITGELILQKARDTMKLLYPHDDSDFNFSTGWLGKFKHRHGIKSF
RRFGESGSVDVQDMEQKLVSIREKIDQFPMKDVFNMDETGLFYRLQADHSLATKQLEGRKQDKERLTVVICCNEDGSEKI
PLWIIGKYAKPRCFKNVNMNSLDCQYRANKKAWMTSVLFDEYVRSFDQMMHGRRVLLVVDNCPAHPRNIEGLRNVELFFL
PPNMTSKIQPCDAGIIRAFKMHYRRRFYRKILEGYEVGQSDPGKINVLDAINLAIPAWTIDVRKETIANCFRHCKIRSAS
DVVGNLDESTFDEETQDLQTMINQCGYRNKMDIDNLMNYPGENEACSEVQSLEDIVRTIIENNAEDDDEDDTVSLEPVTR
KEALMASNTLHNFMIQYKNTTPQLLDAIRKVRDELQTDLNFKGKQTTIESYFNKV
>SMAR27#DNA/TcMar-Mariner 203-1213 [Schmidtea mediterranea]
MNPTTENVNFFVATMKRNNCKATEIHNLLANAWGPENICSVRQVQSIAKKFSSGEREDFRRKDGSGRPREARTEDNINAI
ANLVANDSSVSITVLADATELSWSSVRRILIEDLKKQSVCARWVPHTLNDNQLQQRVDGASLLLQDLHGAVVVIDEKWLY
AKPMPPKEMNRCWVDAGGERPQQPRRIIADKKFHIIVAMNFRGEHYFEIMPPGTTVNAHRYTEFLQRMMAIRRQGTLTIM
HDNARPHTAQMTEAFLQQKGIRRIPQPPYSPDMNLMDRFIFRNMEFARRLQTFQNDDDVKLFLTTFLAAQKRSSLNHELL
NLRQDLQLIIDAGGMYL
>Mariner-5_Crp_tp#DNA/TcMar-Mariner 148-1218[Crocodylidae]
MAAQLSVCTKEEQRSVIRFLWAEGVPPSEIHRRIVAQYGENCMAQRKVYEWVEKXKNGRTSVVDEPRAGRPNTATTEDNV
AKVDAAVRANRRVSIPELVAEVGVSAGSIHAILHDHLNYRKVCARWVPKQLTDVHKRQRVEVCTQLLQRVRDEGEGFLSR
IVTGDETWVHHYDPESKRQSMQWKRTSSPPPKKFRTQPSSGKVLLILFWDCMGPLLVRFTEHGVTINSNTYCHVLQNHLK
PAIRTKRRGKLKQGVLLQHDNARPHSARATVETLHGLGFEILPHPPYSPDLAPSDYHLFGPLKEALRGRRFASDAEVQLA
VQEWLSQQPKSFFEDGIKKLVTRWNTCVAKQGDYVEK
>Mariner-3_BM#DNA/TcMar-Mariner 189-1204 via tfasty with Kusmar1_tp, 1 frameshift. [Bombyx mori]
MDTSKIRVIFEYEFRRGTNAAETARNINVAFGEGTANERTVRFWFKRFRDGNFDLKNEPRGRPPTHVNNNELKEMVEADP
SQTTQELAAWFNVTLPTILTHLRQINKIKKYEKWVPHDLTDLQKETRVETCVALLNRYRNEGILDRIVTCDEKWILYDNR
KRKMQWLTPGQTPQQCPKAKLTNKKVMVTVWWSQHGVIHYSFLRSGQAITADVYCAELRTMIAKLAVKQPRLMNRSSPLL
LHDNARPHTARETVLTLQELQLETIRHPPYSPDLAPTDYHFFRDLDNFLRDKKFSSQEAVQNAFTQFVESRSPEFYRKGI
NDLPIRWQQCIDNNGRYFD
>Mariner-6_BM#DNA/TcMar-Mariner 162-1195 via tfasty with Desmar1_tp, 1 frameshift. [Bombyx mori]
MLKFEPNKRHLRELLIYFFNLKKSAAEAHRLLVKAYNEAALSERTCREWFKKFKNGDFDVEDKDRSGRPKIYEDAELTEL
LEEDSSQTQKELALTLEVTQQAVSHRLKSLGMIHKQGNWVPYELKPRDVERRLCMSEMLLARHRKKSFLHRIVTGDEKWI
HYDNPKRRKSWGLPGHASTSTAKPNIHGKKLMLCIWWDQLGVVYYELLNPGETITGALYRTQLMRLSRALKEKRPQYYSR
HDKIILXHDNARPHVAVPVKXYLKTLNWEVLPHPPYSPDIAPSDYHLFRSMAHALSEQRFTSYEDTKNWVDSWIASKDEE
FFRRGIRTLPERWEKVAASDGQYFD
>Mariner-14_DBp_tp#DNA/TcMar-Mariner 140-1207 Mariner-2_DEr_tp near-identical with errors. [Drosophila bipectinata]
MISLDIAFTSYRRVNMEFTNAEIRAILKFSFVKGKSARETFREINGVLGDGTLSLRTAEEWFRRFRAGENDTMDKPAGGR
PVTTNTDQIMEYIELDRHVASRDIAQEMGVSHQTILNHLQKAGYKKKLDVWVPHDLTQKNLVDRINACDMLRKRNELDPF
LKRMVTGDEKWITYDNIKRKRSWSKAGESSQTVAKPGLTARKVLLCVWWDWKGIIHYELLPYGQTLNSTIYCEQLDRLKQ
AIDQKRPELANRKGVVFHQDNARPHTSLMTRQKLRELGWEVLSHPPYSPDIAPSDYHLFLSMTNALGGVKLNSKEACEKW
LSEFFANKEGGFYEGGIMKLPSRWKRIIEQNGAYFN
>Mariner-8_DEl_tp#DNA/TcMar-Mariner 200-850 Internal deletion? [Drosophila elegans]
MEQRAVIKFCFKLGKTFTETHKLMKQVYGDDCLSRTSTYEWFNRFKNGRESLEDDERSGRPKSAVIDENIQIVRDFVKKE
PKSSLRYMEMELEISYKSIHRILIEHLGMRKVCARFVPHTLKEHAHRATLVTDFLTKNHILTVNHSPYSPDLAPCDFFLF
GKLKLAMKGRYFDDIKSIEKATTDILKAIPVDELKHSFESLLNRANRCIESEGDYFE
>BEL-6_NV#LTR/Pao 26-5436 via tfasty with BEL8_AG_147-5375, 1 frameshift. [Nematostella vectensis]
MSGQLVLKKKVRGAHRGAATKLIRKVNEILDLEEHSEDEKLAIRQHRDSAKEKAETLRALDDEVIELSAEKEDSEELEAI
ITEGDEMRARLHEVIHRMEGLMALWDQPASPAISPASLPSSPARSSTSTEARVRARLPKLEVPKFGGKIQEWPEFWDSFE
SAIDSNEALADVDKFAYLKGLLVDEAKQTIAGFAMTAANYGAAIEILRKRYGKTEAIQRSHINDLLNLSPVFNDGDLTRL
RRFYDVAETHFRGLEALNVNETSYSGIVVPALLQKLPNSFRLTITRGYQNFMSWSMERLLAEIRAEVELREEHKPISSEA
SNKKPQDGMQRQTSGSALFVEANGQGTCVYCLGKHKSENCERFKSPGERKKILVKYARCFRCLRKNHRSYECRSKDSNCK
GCAGAHHLSICENQASGQTETPQQERGESEQAGEATSNHVTSGFAESFHVGSGTRIALQTAQGIVSWEGGVSARTRFLFD
AGSHRSFITASAARKAKLPVVRREWLCINAFGQRDQKGTLREVVEFNVSPVNGGASINVQAFVVPEISSIPNGHVELARD
QFPHLKGLWFSDVNRNEERLEIEILVGADYLWHFQKGRVIRGKVEEPVAIETELGWVLSGPMTVDSECVENVQIVQANLL
VQDRSAEQSESLESEIARLWDLETLGIRETQGVQEEFLDNICFNGERYSVKLPWKVNHRSLPTNYENSLGRLHGTMRKLR
QEPEVLDQYEAVIKGQLESGVIEPVHALEDGNKIHYLPHRAVVRRNVATSTPVRVIYDASAKTGKKGVSLNDCLHVGPSL
NPLLFNVLLRFRLHRVALIADIEKAFLNIEVDPGDRDCLRFLFPEDPRREDSVIKVYRFCRVVFGLNASPFLLNGTLRHH
LVKFKEIDPEFVEMLVNSFYVDDLVTGSNTPEEAYELYVKSKSRLAEGGFNLRKWQTNDSELRGRVDVSEGRCMPGSQEG
VARGKTSQGVASDCDIQKVLGLPWNSSSDTIGLTFGHLYEKAQQSPATKRNVLSVLAGMFDPLGIVSPVTVAARILFQTL
CRMTELTWDEELTGEVRKEWEAWVKDLGNLMSVEVPRCVLDTSNRKVQIHGFADASRKAYCAVVYLVYDVGGERQVRLLC
SKTRVAPLKEMTIPRLELMAALILARLVSHVKEALGTLIEVEREVYWSDSKTVLYWLANKGEWKQFVKHRVDEILQLTRN
GEWRHCSGEQNPADIGSRGALASKLKSSALWWNGPHWLTGPEQGWPALQIERTPAGAEEEKGTVSMVVNTRVPKSDISSV
INPNNFSNCSKLFKVTAYVRRFMHNVRAEKVEDRMTGRLSREEMTNAELEWIKSAQVDLTQQATFNQVTKQLDLVEEAGI
LRCRGRLGNSELATDARMPIILPRDHRLTELVILDCHSKLHHSGVSGTLAQLRTRFWVPKGRQVVKKIVHRCVTCKKLEG
RAYAPPPVADLPGFRVTQAEPFSKVGVDFAGPLYYKSSTGMMQKAYVALFSCCVTRALYLDLVVDLEACTFRRCLRRFAA
RKGAPTLIVSDNAKTFKAAAKALRELYDHPEVQAYLEVNRVSWQFNLEKAPWWGGFYERMVGSVKRCLRKTLGEARLTYD
GVLVEVESTLNDRPLTYVYDEVGEVELTPAHLMYGRRLNSFPDEVVEPDDVANPDHNSRFRYVSAKLSHFWKRWSKEYLA
SLREFHRSSRVTGHHRETVQVGDVVTVHEDGSKRSQWKMAVVEKLIKGRDDVVRGAQVRLVKKGKPSRLDRPVQRLYPIE
VRCADSTVNRSACADRSVHTRARSTRAAALHAQNRIAIGALLDS
>BEL-6_DPe#LTR/Pao 625-5678 via tfasty with BEL-5_DYa, 5 frameshifts and 2 stopcodons. [Drosophila persimilis]
MTTLEDLKRQRSNIKRDITRIKSVVDAKSKTPICNDDLRYRLNILETYFKNVLNVQANIEDLSPNDEGRADLEDTYIAIK
LAIKEKMGRDLNASIVAPDYHPPPVKSSLPRLSLPTFDGTYANYKNFIHSFEQIVVRESGLSNIEKFNYLLTCLTGLALD
TIQAFQVTSENYPKALEKLKSRFDNPTLIFLEGIEALFALQPVERSNSQQLHSLVDKASALLSSLESIGKPENIVHAMVI
YIIMEKCDQQTRNKWKESQDYKTLPTWLACTQLLERHCQFLHSSGNSAATSSQRKAESNKSNRHSNHQINSSFVITNPSC
TLCSSSGHKISNCAQFKAMNSNQRYDNAKRLGLCINCLGNGHRVAQCSSTHRCRSCNRNHHSSLHHSQPQQPPQSSAGQS
STTEPVLQPAQPSWQTAANQSHQAASHSHMEITADDQILLSTAMVLVKDATGEYKLGRALLDSCSQVNFVTETFAQKLRL
RRVKHHIGIRSIGDSLTSLKARTTTSIKSRTSGYQLTLQFGITSHIAYQPDSEIDISNWNLPANTPLADESFYRTKRIDL
LLGTEAFYGALAVGQIRIGPNLPTLQKTLFGWVVAGRYQRQYNRQPPLCLATVEQSIDKNLQQLWKVDSFVDPSARILPN
HRRCEDHFRDTTHQDASGRIGVRLPFQEDLTCLGSSFDTARARFFAIERRLARLPEIRSQYISFMQEYASLGHMSLVLNP
NLEEPHYYIPHHFVLKPSSTSTKLRVVFDASCRTTSQRSLNDLLLVGPTIQDELYLQLLRFRRHKMYRQVLVSEKDRKFQ
YILWRASPNTDLQTYQLNTVTYGTASAPFLATRSLHYLAEDCKDAWPLGNAAVKTAFYVDDLWLGHSNHPGVMEDESTKE
LNISENSVSSTLGVTWHQRSDAFSFTFNPKEVYPTTTKRTILSTASSLFDPIGLLSPLVIVSKIILQELWLLKLDWDESV
PQNLSHAWSKCLESLNxLSSLAVTRFCSLPDTRSIQIHGFCDASIRAYGCCVYVRTENSLGQVTVKLFTSKSRVAPVKKQ
SLPKLELCSAHLLSQLYNKVKAIFSKHTITSYFCSDSQLVLHWLQQHSVTLSTFVGNRVSDIQDLTSDGKWRYVPTHQNP
ADILSRGCNVSELIKYPWFSGPTFLVDDSLNWPATGGKLDIDMDVVNSENRKSLFAAVHETNNILNIIDNISSYTHSLRL
IAWMIRFIRRCRKQSTFTTTSPTPDELRFASHCLIWNIQQTHFVKDIRLLQKKKPLKSSLKFLTPFLEVVNGFELIKVGG
RLEYSDLQDGQKHPLLLPSQSKFVWNYIRHLHLRNYHAGPKALVTLIRLEYWIVNARDLARRIIRSCVHCVRYRPKLLQQ
LMGSLPPTRLAPARPFERCGVDFCGPINTYLRIRGKGPTKAYIAVFVCLLTKAVHIEVVSDLSTKAFLNALKRMIGGRRK
LPTDIFCDNATNFVGASNQLQELKKGLCFxSRTQDEIYKFCASDFINFHFVPPRAPHFGGLWEAGSPRVQGGRLKSYAGQ
HKGSTFERVEHCRRRDRIGSSTRAPLSPLSSDPNDYSTLTAGHLLVGESLRSLPERSLENIKLSSMDRYDAITALKQRFW
WQWSADYVNELRSRTKWTAPSTNLTEGTLVIIHEDNLPPLRWKLGRVQSTVLGKDGLVRVVHLRTANGTCCRPIHKLAIL
PVV
>BEL-7_AA#LTR/Pao 76-5975 via tfasty with BEL-629_AA, 3 frameshifts and 1 stopcodon (deleted an apparent 368 bp insertion after pos 2255 in the consensus). [Aedes aegypti]
RRAYVLEDSIEQNCPLCSLPDSSQMVSCDECSRWFHLACAGVTETIADYDWSCQGCVNARISAPVPQLSSSHIQCDAITT
GLPTGLQPTSNLPPIYGQEALGVPVSLVSGPSVQDTISTSVFPVRQNNTAHVVSAPENTTVSGPDMDTRHQFSALPLVPD
AAPIMTTAPLNNRRVLILLHNCRSSxGKHLMQKYQMLMEDTRIPSRSANVPQFNASSTSLIQQPFMSAHQSHIPTVGFAS
TSAIPNPQHHSSPMQNLHEINRPMRTSLPYQSLPVQQPNPQYHPSIDPLSTIGLGNDQTVLNRSQIAARQAVVATIQNFN
LEEHLYNISLLQNLVDRLPPMIRLNWATYRQGLYRVTLTQFSDWLYNLAEAASAVTIPPTLGSIEKQRYTRKDDGFLNAH
TETFEEQGLSSKAFRRCLVCQDDCKTVEDCSKFAAMDLPSRWNTLRELKLCRCCLGKHFGSCKSTKVCSINGCAFKHHQL
LHNVSKDRRTETATGHHEPANNLPIQNSVEHNCNTHRGNGQSVYFQYVPVVLHNQGRKIRTYAFLDCGSSLTLIEEGLAS
ELRLKGEKHPLCLRWTADTCRYEDSARIVTLDISDSNEISPKHRLDEVYSVKELKLPVQSLSFEELSAKFAYLQGVPVDS
YVDIQPRILIGMNNVRLTHPPLECREGDANEPVAARTRLGWMVFGTWPVQSTTVHTAVPHSFHICHHSAPNDFELNVAVK
QYFALESIGIMSPQKLMLSTEDERAIKLMQTSTKFDDGRYQTSLLWKYDDVRLPNSKPMALRRHNCLMKRMKRDPILAAA
IKSKMEDYLEKGYIRRLSPDEIQQPRNKVWYLPIFPVFNPNKPNKIRIVWDAAASVGDVSLNSVLMKGPDLLNDLTSVLY
RFRERPIAVSGDIAEMFLRVKMNETDQHCQRILWCQDDGTTAEYAVTVMTFGVKCSPSCAQYIINLNASKFESQFPEAVE
VIYKGHYVDDMLASVDSEDDAIKLAKDICFIHEQGGFTMRNWISNSSTVVQALGESGSAEKNLYADKEAVLEKVLGIWWD
TQTDTFRFKLSLERHQELLSGAKHPTKRDILRVMMSVYDPLGLLSHYMIYLKLLFQEIWREGTLWDDEIAETQLQKWKCW
LHLLPEAESARIPRCYDLSPSLGTNRLVELHTFVDASELGYAAVCYFRFIEENRITCSLVASKIKVAPLKFVSIPRLELQ
AAVIGTRLAKSVELGHSISIARRFFWTDARDVICWLKSDHRKYSQFVAFRVGEILETTDVNEWNWIQGKDNVADEGTKWN
GLPSFDGKCRWFAGPSFLSKPTVEWRTDMVNGYTVEELRPSLLYNSADVVDKILDPEKYSNWMRLLRHTTWVLRFPANIL
RKGENRLRGPLTCEELRVAENFLYKRAQMDGYMQEMETLAANKRLTKTSSLYKTNPYIDDCGVMRIRSRIDVCDFADNDT
QFPIVLPRGHPLTKLVLQHIHEKYHHTGNETFINESRRKFYIPRVRSECEKVRRTCQHCKIRRAKPEPPMMASLPKQRLA
AYVRPFSYVGIDYFGPYQVIVGRHPEKRWGVLITCLTTRAIHIEIAHSLSTSSCIMALQNCFARRGTPLQIISDRGTNLV
GASKELKEALRNLDTSKIAAEFTTASTAWSFNPPSSPHMGGAWERLIQTVKRILIQIKPSTRLPTDECLRNCLIEIENIV
NSRPLTHIPLDDESSSALTPNHFLVGSSNGLKPLVSFDDNVISLRQSWKTSQILANYFWKRWVVEYMPMITRRSKWFYPV
KPVAVGDIVIIVDPSFPRNCWPKGRVIAVKQSKDGQVRSATVQTASGIYDKPVVKLAVLDVGTNRSRPDEHPVTAGDCHE
RPSS
>BEL-8_DWil#LTR/Pao 71-5571 via tfasty with BEL-598_AA, 3 frameshifts and 2 stopcodons. [Drosophila willistoni]
MSNKMKTRGRKKRINMDAMETPKSAVNESTAGVSEIERDASNKSKAPKDREDNTNILESVQRMMTQLQEQIASQSSKIEA
IHNGQEQQIQEIHLVQSEIVNLKIANESITDCISELEKTHALGGTQGAAILDGAQRHGAIMGAPHALGGTQGAANIDGAQ
RHGAIMGAPHALGGTQGAANLDGAQRHGAIMGAPHALGGTQGAANKDGAQRHGAIMGAPHASSGTQGATDDGATQNKMPF
KTTTGISGVYEPFPINVGTGESGNVTGCVRVGQASQGQYPHNYMSGHRIMDLPEFSGRAEDWPVFITMFIESSAAYGYTQ
LENVIRLQKSLKGAAKREVKGVLVNPANVPHIIEHLQFMYGRPELLIKSQPEMVNDIPQIPENNLERMIPFAIKVNNLVI
FLQSSNAVLQLQNPSLLDQLVSKMPMSKRMQWQEFSSQIYPYANLMDFSNWLNSIARTIAKVTLMTTLNRPTSKGDCRHN
PKLVMQTNTGEYQKKDKKYTKVCTECNGDHSLSECDVYVKADVNEKWNMVKKLGVCFSCLKRNHNMISCKFKRRCNISGC
KSSHHKSLHNSNRQTVEEDKAEAATHTVKSSMKRLLVKVLPVEIMGPQNTLVKTFAFLDEGSNVTLINENLAKKLGVKKN
MDWLTLNWIKNHTINLNTTVCHLKIRGINGNKNWLQLKGTTIPDLELPLQSMDHQTLAEEYIRVANLPIASYTDAKPTIL
IGIDNTHLVRTIRSVDIGPRLVASKTPLGWVIFGSRADHSNTSPLVTSVFHANSLEDQMNREMHDLMADYFTTRAKEILQ
NTTVKLEGEYETGLLWSKETLNLPDSYSMALKRLQLIEHKIIRSNSVKTYDEAIMDFVKKGYAVKMTKLQTCVISSKTWY
LPHFAVYNVNKPGKLRLVFDAAASIEEVSLNSRLLKGPDENPPLTQILFQFRQGAVAVCADIKEMFLQVRVRQEDQDCLR
FLWRHGDTTREVDTYKMTVMIFGATCSQCCAQCVKNINAQNSTSSKEVIDAIQNNHYVDDFVASFVSEQKAYDISSEVKR
VHELAHFELRGFVSNSKWVQNKLNKEEKNKTDKLPVSMDKKAVDKVLGMYWYNDIDQFTFDLKMNRVEQSILKAENCPTK
RQLLSLVMSIYDPLGMLADLTIHGKILIQEICMSSQANIELHIFVDASEQAFAAVGYWRIILDGLIETIFVAGKTRCAPI
KTLSVPRLELQAAVLGTRLKTLILESHSVNVQKYTLWSDSKTVIAWIQSDHRKYKQFVAHRINEILETTNENDxRWVPTH
LNAADKATRTKVKIKYEPGNIWTRGPEFLLKDESSWPVQEKIYVENDSSEVKRVYLTTSVENIIDLNRFSKYLKLKRTMG
WILRFKQRILKRQCDNDVTTLSSRELQDAENTLVKIMQKEIYHKELADLQANSCVSNESSIFSLTPTTNADGILVVNGRL
DYATSLSQSARQPIILPKKHKLTDLIVTSYHDRFHHQNDELIITEIRQKFWIICLRAAVKRAKTVCQFCKNRKIQPQATL
MGQLPTDRVTPYQRPFSYVGVDYFGPVTVTIGRRHEKRWVALFTCFTIRAIHLELAADLSTDACILCIRNFINRRGIPIR
IRSDMGTNFVGADRLIREVKDLFDWNYIAEEMANKGIEWKFNCPANPSSGGCWERLVQSVKKVLVITLQEKAPQVETLRS
LLIEAENIINSRPLTHIPVDKDDPGPLTPNHFLLGTTNSTQTPGEEDNFCHRKQYRICQQLKNTFWKRWIREYLPTLTKR
TKxFAPIRPIKMGDLVIICDENQPRASWKRGIIVKVIPARDGLIRVAEVQTNAGILKRPVSKLAVLDVLGKTPE
>BEL-8_AA#LTR/Pao 28-6927  [Aedes aegypti]
MSSQPNVRQTRSQTRAQQANANPNVGGDDRVSSHSSRNSFIPSMMDNDGGELRDCGGCNRPNNSEQYMVQCQKCSIWFHF
SCANVSTTTVRTISFVCGKCMPGGDSVPQPTPSVISGISSSSSIRRARLERELQLMADEKKLMEDLSRERIDMERELRER
ELQEKLEREKQFIARRHALLSRQDHDEERSVRSMRSSQNSIQRTEDWVRQTGSGVVGCGDTVQQIQASTSANSGHPDEAS
LVNAQGVHPSSTPLRTANESPPLGDAPMANTGSEVRSIPQTVESITIEDSEDFAEGAVGLNLNKCDPSQNPSNLPLVDLQ
PYEDILKLEEVPPTGAIPKINRFGGHCYKRWSAETGELRKQNALLHHQQSEAELRVVHELMVKHRTDMDTRRKREMELVH
QIGSLDKQHADELRRVRESEKDLRTQIEHRDLEKATLKAKIETLETQLVEEKERTRNSEADMRVQLIRSERECEALRLQL
AEMENELQCLREMEHQLHDQIEAARRSEQEAVRRWREAEKEYWDLHDQVEQVISRNVDRSTDSGSSPPLPPPPASWLEPN
TLGTELSSASELNPSFPPPPPWVSVNNVLSGDGREFAPLSGQTVGGMINMNPPIHCDSNMISSGSNIPPQMSSQFLVPPY
ASGLGPSPQQLAARQVVTKELPIFSGDPIDWPLFISSYQHSTETCGYSNSENLLRLQRSLRGSAKDSVSSFLLHPSTVPQ
VLSTLQQLYGRPEQIVNNMIAKVRATPAPKPDRLETLVSFGLVIQNLCGHLKAVGLERHLANPILLQELVDKLPATVKFS
WALYQEQVPVVDLNVFSDYMAKVSSAASGVTQLVNVTQKPAKEERNRQKERSFVNTHVSTDQPKATLRENAEKVGTNGGK
QKEKDVSKNNSRFCAVCNVDNHQIESCTSFKGLDLDGRWKAVKSHRLCARCLTSHARWPCKGEVCGINDCPKRHHRLLHF
DPPAETKTTNAVVTVHRQLSSSTLFRILPVTLYGTKGQLDTYAFLDDGSSVTLVERSIADALGARGETETLRIEWTGGIN
KTIAGTEVVMMEISEAGGSKRHRLSEVYTVENLGLPQQTTNYAELSTRFAHLSKLPVKSFRSAVPGILIGQSNSHLLATL
KLREGKLTDPIATKTRIGWTISGSLQKPTMHRQLHIHAESTDADLHEYVRHFFDVESLGVAVVPAVKGVEEQRSYRILEA
TTRRLSDNKYETGLLWKHDYVEFPDSRPMAEKRFKCLEKRLQQDPVLYDSFRRQIADFKVKGYIHQATTDELEEYDLRRT
WYLPIGIVINEKKPGKVRVIWDAAAKVDGTSLNSMLLKGPDLLTPLLSVMFPYRERQVAVSADIREMFLQISIRKEDRSA
LLFPYRDSPDLPMSTMVSDVAIFGAACSPAHAQYIKNMNADEQEAVFPRGAAAVKKRHYVDDYVDSFDTAEEAVQVAMEV
IEVHKRAGFHIRNWMSSDSTVLEKLSEANRKPXKNMLSEQNTAFERVLGMAWMQEDDVFTFSIQSWEKVRNLLEDTAIPT
KREMLRLVMSIYDPLGLIASFVIQGKVIIQDVWRTKTXWDNQIPPEIAERWMEWIAVLKQMDGLRIPRCYFPGYDPESYK
NVELHVFVDASAQAYAAVAYFRIIDHGQIRIALVSSKTKVAPLREISIPRLELMAALLGARLRKTVEENHSLTIQRTHFW
SDSSTVCSWIKSDTRRYRQFVAFRVDEILSLSKVDEWRWISTKLNVADEATKWGKGPSCNTDSRWFQGPEFLYSNQTNWS
TVPEDNSDESNSELRETYMCNHQVRLPIVDVERFSRYDRMLRAVAYVHHFVDNLRAVKSARSADTVGVTSEDLRKAERTL
WLIAQNEAFPNETAVLKRNLELSTACQKKIEASSSIWKQSPFADEFGVLRVGSRAANAHALVYDTKFPIILPRNHRITDL
LLDFYHRKYGHANDETVVNEVRQRFHVPRLRVEVRLARKRCMWCRVYKSTPIAPKMGPLPAVRLQPYVRPFTYVGVDLFG
PYLVKIGRSVAKRWVCLFTCLTIRAIHLEVVTNMSTDACKKAFRRFIARRGAPQEVYSDNGTNFVGANRDLQTEISKIYT
ELGSTFTNVQTQWRFNPPAAPHMGGCWERMVRAVKSALECVPVERKLDDESFATVLAEAESMINSRPLTFIPLETADCES
LTPNHFLLLSSSGVREPEKFPTDIGMALKNSWNLVKHTLDNFWRRWVVEYLPIIIRRTKWFQDVKPIEIGDLVYIADENV
RNRWIRGRVVHTIPGKDGVTRRAEVQTSSGVLKRPATKLAVLDVASSGDDRPDVGATRRG
>BEL-5_DVir#LTR/Pao 534-5777 via tfasty with BEL-4_DEl, 3 frameshifts. [Drosophila virilis]
MENSTSEKDFCKAKCASVQRQLLAMNEFFSAGEMISFDEADLMVRIESAESMKAEFDISQSRLEKLDFARSDFEKVYWKI
KSNLARQMDVVTKGRMTDANSTTIPRFAESTHTFAHLFNRKSRLPELQLPRFSGSYEDWPDFYAMYKTVIGSNEDLSKIE
KLQHLRACSDGAALNTIKSLEPVDVNYDKALELLIKRFDNKLLHFQGHVRAIVGLPGVEKGSAEALRELSDKINSHLRAL
STMSTTEELADGLLIHTISHKLDQHTQEKWQEALATDKLPRWTDMSAFLEKRCRMMENLKGATAPTPSHQVTRNVQKLNR
NTFIASSSNNYQQNCNFCDSKEHFLVKCPLFLNLSPSLRHKEAKRLHLCLNCLRKGHGLQQCRSGHCRHCQQKHHSLLHM
SPITTQSSALCTPSLQAATTIQPHASSLSNPPSSTLVSTALEFAPEATNAQPVDYVVLPTAILYAKSHSGVFIPCRALLD
SGSQLNFITARLVKQLQLKTHHAAVSISGIGESTLSSNMSADVSAQSRDRSFSTSFSAVVTRSITDYQPHFGLDISGWNI
PKNISLADPTFFKSQRIDLLLGAGLFFDLICVGQIRMADNLPTRLQKTKLGWIASGGLSRVHNKHTSLSALYKEPNPWED
PLSDIVKRFWEVDNCCGTTPALSDEDALCEQLFLQGYTRLKSGQYSVRLPAKLSFDTLGDSYQRALRRFKSLENKLDKNH
QLKESYSAFMREYIDLGHMSLASKQQLVPQFYLPHHCVEKPDSSTTKLRVVFDGSAKSTSGASLNDLLHTGPAIQPKLFN
ILIHFRFLKVAMCGDICKMYRCVRITHPDQFLQCILWRDHQNESIRTYTLDTVTYGTKPAAFLAIRAMQQLAHDEEPTFP
LAAKIVCRDFYVDDLISGGDSIEEAIQIRQQVKLLLAKGHFPIRKWCSNEPDALKGESESDCEKLMEFKDGTNIAKALGL
AWSPSSDSLLFNFAEIVPEGSVTKRSILSTIARFYDPLGLIAPIVTRLKVFLQALWKERVNWDECLSQSLHFEWIKLISQ
LSFVSSLKFSRFVLTPLATYELHGFCDASTAAYGACVFVRSEMQGVFSSHLLCSKSRVAPLKTLTIPKLELAAALLLSEL
IGNIAKCIQFECRYHCWTDSTVALAWIRDSPSKFNVFVSNRVSQIQERTKGMTWHHVPSQLNPADILSRGCTPLELLDSQ
LWHNGPPFIQAASSTWPQNVAYPFELPERRQKALVLSTKTDLSASCKFNNTFAKLQRTFAYVYRFIALKRSDSTRSKGPL
STPDDIKRGTHLLIKNIQLTHFAEEYKALSLKRPLPTRSKLRSLRPLLDAEGLLRIGGRLQNSNLEYEAKHPLLLPKRHP
VTAAMITYYHLEFLHAGPQFLLATLRQRYWPIGGLKAVSNIINRCVRCFRMRPKLLEQVMAPLPAERVQPSPTFHVTGID
FCGPFYVKSEVRNRSPTKCYISIFICFATKATHLELVEDLSTSSFIAALKRFISLRGKPHTIWTDNATNFVGARNELKEL
RDLFISDPQRNEIVRNCLALGINWKFIPPRSPHFGGLWEAAVKSAKYHFYRVVGNSLLSFHEFRTLICQISAMLNSRPLC
YITENPNDLEILTPGHSIWGKANATIDEPDITHLSIGRLSRWQRICHMQQSFWKKWSTSYLSLLQERGKWRPSKQNLQAG
SIVLLKEDNAPPLRWPLGRVDSVITGDDGIVRVAVIRTQNGLVKRAIAKIAVLPIETTSVESLYLPTGG
>BEL-3_DWil#LTR/Pao 287-5572 via tfasty with BEL-599_AA, 4 frameshifts and 5 stopcodons. [Drosophila willistoni]
MEEMKIFIKARGRLKTTITRIYGYAENPAQDADVFAIDTKLETLSNAWNEFVKSGDELAKYDKLEGYVDPTEDFGIYEKK
YEIANARLKALRAALAPSGKLEEIGAAGNDGSLFQGILQQMQNQQQQLQLQMQGQMEHQQRQMELQMQSQMEHQQRQMEQ
QQLLVERLLSPQQSSSSSGSQSVATPATRDCELSKINIKLFGGDYKEWHAFKDLFESTIHGKATLTNIQKFYHLKxCVIG
EAAILIQHLPVVDANYDTAxKSLSDRYEKPRYLVNLLIDTFTDLPKAVGQNSSSLRALTCGASDVIRALDASGQTGRDCW
LIYLIINKVDEATRREWIDKSQDIENPTIEELLKFLDSRCDRLELSQVIDHVASKPRDEKGKRQALTMLAITGNCMKCHS
TEHILSACPQFQSLNVKQRYTFAKEKHMCFNCLRTGHGVSACGSKSSCKYGKRRHHSMLHSEGHSSESEESPAASAIAMM
NVTRPSTPNGQRRSTLPTALVHVRNSQGALLTCRILLDSASDLSFISERCVQTLGLARSPFRVATSGISDVKAGITRGFC
SLQMMSRVSSHCIDIKAHILGKSPLARENIDASSLSVFNGYxMADPDFRTNASIDILLGNDCIWLVLTGEKLCDGQGHPI
AVNTIFGWVITSVYTSRLQTSSTSLLTTVNIDGLLQRFWELEEVPSHTTVNEEDEKVETHFRRTHNRNSNGRYIVDLPFK
EQNPQFADTFQGARSRFLAVERLLMKDSSLKLKYTQFMREYIQLGHMKEVAADEDTNVCKKSFYLPHHPVMGAKLRVVFD
GSFQDRDGRSLNDALHIGPCIQRNLFNVCLRFRMHRFVFSADIVKMFRQILVAPEHQNFQRILWRDDPEEPLKHYKLTTV
TYGTACAPFLAVRVLEQLTTDHEYEFPRAGRILLDDFYVDDVLTGAMNEQELLDIKEKLILLMSRAQLELSKWVSNSKRI
ASNEGNKIDFSKMAAKVLGLHWRPGEDVLTYKVSLSEHMTCTKRQVLSDTARIFDPLGILAPVVIKFKILLQELWLLNLD
WDSELPTKQAHLWQTFRTDIFTLRNLKIPRFVDNQPDDIELHGFSDASLKAYSAVIYNRVAHLDGSIGVALIAAKTRVLP
LKQKSLPRLELCGALLLARLFQAVRSGLRQKDVKIHAWTDSTIVVSWLSHQPCKLKTFVANRTAEILETIPRSAWRHVST
KENPADCASRGMLASDLINFDLWWKGPSWLHDCTLYSETMNRPPTCCSILKPAAELEFKTNILTTISKDIEDSPFEVLLG
RTSSWIRLVRVVAYVFRFVHQSSKSKYSGPLKFDEVTRARKFCVRQAQNQFNDDRQLLLRKQSLERRSILNKLSPFVDED
GIIRVGGRLERSQLPADAKHPVVLPKQHRLVELLLKHEHKVNLHPGVSAMFVIIRQKYWIIGARNLIRRITHECLNCFRQ
RHHTANQFMANLPAVRVRQAFPFEHTGCDYAGPILLKVHKGRNPRKEKGYICLFVCMVTSALHLELATDLSTDTFLAALK
RFMARRGKCSQMYSDNGRNFVGAKRALEMVQLLASREHNDVVSKALADQGINWNFIPPYSPHWGGKWESAVRSVKLHLRR
VIGTNVLTFEQMHTLLSQIESVVNSRPLCTGSDTEIAYLSPAQFLIGRTYTAVPEDSYxQIPTNRLSYWQHVQAMLQGFW
KRWHQEYLTSLQQRPKWTTKLPNIAIGNLVLIKDSNAPPSAWLLGRVTQLFTGADGLVxAVQVLTKSGQVTRPITKIAAL
PG
>BEL-3_DMoj#LTR/Pao 570-7672 via tfasty with BEL-2_DGri, 1 frameshift and 1 stopcodon. [Drosophila mojavensis]
MEGLINNQTTLGEEIQALIRNYKKDPQERKSNATYFHNKAAHLNQLWTAFDQGNEKIRNLMAENPVENSYVREGYFSKIK
DIVIKYQEEFSKKLNELSPPDTARSDLIPLQRHQTALLAALQRMIGQITQESQARFRPLVKEYWEKINHIHFEIFRLFED
PIALGYNMENYLNAEAAIFQIQSTPIDVKPSINAAAAQTQVQLPKVSIPQFDGCYLKWQQFHDLFTKMIHESTLPTVQKM
WYLKSNLSGDAERLVRHLDLTESNYETAWTMLKERFDNKRVLTTTTLHKLLDQPPVTNDASSIKSFHDIIQETLATLRNG
GIEVNNWDPLLLVLLARKLDRTTHVLYEQSIKDTRKLQPIKEFLAFLEQRFLALEAIGGKQYVPKEKQRICASASTEKSK
GCQFCDSAEHRIYRCDKFASKSGDARLKWALNQKLCLNCLRPNHMAKSCFLRNCMKCNKKHNTLLHLENKDDVKITAAAH
STINNYVLLATARVEVHGNNGQYGSFRALLDSGSQINMISERAVKTLSLAVKNSTMRIEGIGGNPSSMKSRVNVLIKSQN
GSYTTRVEAFVLPHIVADQPNHKIDNISWVPSNIPLADPTFAKPGKIDLLLGAEHYFELILPEQIKRSPKLPMMQNSKLG
WIIAGRVNRSTSTVATCSxQLQLMTNYLLERFWKLDNLETTQPYRTPAESHCETHFKENIQRAVDGKLIVKLPYSEDVSE
LGESRELAIRRFLALEKRLCRDPDLQGNYVEFMKDYEKLGHMKEVTPQMVPKSHYFIPHHCVLKPDSSTTKLRVVFDASA
KSSSGKALNDILYAGPTVQSELFSILLRFRTHKYVFTADIEKMYRQIWMNPADQFHQMIVWRNSPQEQLKYYRLKTVTYG
TTSAPFLATKCLQHLANSSKDQYPVGAKAVEYDFYVDDCLTGADSITEAIRLRDEVNKILLPAGLRLRKWCANHDQILAG
ISKEDTTQMVKLDNTEDNSIKTLGLTWSPKSDSLHGRAEAAKATKITKRVVCSELAKIFDPLGIFAPVVVRAKIFMQQLW
ESKIGWDEELSPSLQQDWKIYRDDLQSLNKLKIPRHMFDGKIPVAREIHTFVDASEKAYGAATYIRATYKDNGITVRLLC
AKSKVAPLSRQSLPRLELCAALLGAELTARVRKDLNMKSSCNPAYLWTDSRIVLSWINSQSSSLETFVANRVAKIQELTI
ATQWRHVSSQNNAADILSRGTLAKNLDSTTLWLHGPLFLHGSPSKWPEPFVKMPSANDTLGRKGNPRAVAAPVAKTCDVI
YSINHNNSFRRLQRIIAYIMRLRHPNKNGNTLTHEELERARIVILRKIQQVDFPQELTNLTKHGVVDSKSNLKSMTPFLD
KDNIIRVGGRIEKSALSFDEKHPILLPHNDPIVKSLLRELHIDNMHCGPQALLAKSRQNYWILKGKTLARNITQNCVRCT
RAKPKMFQQLMGNLPELRVSPARPFKNAGVDYCGPFWIHHKVRGRRPDKAYIAIFCCFATKAIHMETVSDLTTDKFIAAL
KRFMGRRGNCQTLHCDNATNFVGANNKLKELEDAIYSDKAKDSILAECHKTNVKFHFIPPRAPHFGGLWEAAVKSAKHLL
LKNVSTASLTYDELETVVIEIEAILNSRPITPMSTDPNDLAALTPGHFLIGEPLTAQAHDAEREDGRSLGQRLELIQHLK
HTFWTRWSQEYLHELQQRTKWTRSTANVSEGMLVLIKEDNVPCRQWPMGRIQRVYTGPDNHIRVVDVKTAHGTFKRPIHK
LAPLLAIDEPQHKHPLEDISQNDPSANQKAKRLRTPWTPSLTTMLLTIILFLPLILTQSINITYFESKPGIYYERIGSAR
LAVADWTIIAYYDLEPYWNEMKTFSKGTNSIKKLCADLSITVPCQSVYQHFKHVENELLAENELLQQARPKRAPLDIIGN
IASSLFGVLDSTYAKEMSETILKVKQNEDYLVSVLKNQTSFVDSTFNVLKRDEATIERRLNNMEDQLNAMITEKAQHNLF
HWYISLTTQLTLTAANLQRMQTEIIKVLTDVRHNTISPLLLSPSQLRDQLEQMKDHLKIGQQVPSTNGNVLQLYKMMQAE
GAIVNRHAVFKITLPLISTQILELYNLIPIPVVSSRGITKISISVPLIAVNDHRDEFLSLTHEEFRHCHPLQASEHICYH
KQSLFRMEHCCEFLMFNNKTSDNCKTSTTNHSLSWANMFFKNQWIFATRTPMDLSAVCPDGTSSIGLRDAGLLIMKSGCN
IRNADMIITGHSTSTSTMYSSYMRFGNLTTQPPHQNPSLNKSRELLEANNLKNMHLIPAPEIQLPQWISPINHSVIMSYV
ALAASLILLALYFSRRINQAGPTTPRTQDGISAPAIGQDAFRIDISDS
>BEL-4_AA#LTR/Pao 3-4993 via tfasty with BEL-17_CQ, 1 frameshift and 1 stopcodon. [Aedes aegypti]
SVIHSNLQLSAVQKLHYLRSSLKGDASRLISSIAITADNYAIAWKTICDRYENTNYLVKQHMSALFRVPCVRKASSSALS
ELADEFNRHVGILDKLENVDAHWNSFLVERLSSLLDEKSLIEWETQCKDEETPQYERLLEFIRKRSRTLQKCTSSCNASS
AIQVKSVKPKPTSSHVVSDNVMKCQSCKQAHPLVQCDAFIKLSPSQRLDFAKKHRLCINCLRGGHMARDCRSSLCRMCGK
KHHSMLHLPTPASNSAVIATPSEEQSTNTSQACTAICTTATTTSQSESSYSVANAQPVVLTRTLPQAIVPISQNAWSPLV
AIGQPPSPSPVVSNGQTESVHLPCPPQPQQQATSLTEANNTFDSIVFLSTAVVRVRDVNNVYHFARALLNSGSQSNFVSE
SLCQKLDLKRTRINLPVSGIGQATVNVHYKVNIVLSSRFGSFEQQIDCLVLPKLTVSLPSRSIDISRWTIPRNLPLADPR
FNISLGVDLIIGAELFFTLLEAQKLTLNGFPTLQKTVLGYVVSGNAPSKSPETKVCHVATDQDLNAQLERMWEVDDFDVG
RALTQEExHVEDHFIRTVFRDDTGRYMVRLPFRESQVPFLGDSYKSAVNRFSMMERRFSKDDELRTEYTQFMEEYLRLGH
MEECPSVDGPQFFLPHHAVRRPESTTTKTRVVFDASSKSHGQLSLNDVLFTGPTVQPALLIMVVNFRLPRYVFSADAEKM
FRQVWVHPDDRKFLSIVWRSDPSLPLNHYHLKTVTYGLACSPYQAARVLNKLAEDEGESYPLAAPVITKRFYVDDTLAGG
DDLEEVVETCRQLQELLARGGFTLRKWCANDPTVLRHIPRELLGSTGPTEIGRSVITKALGLLWNPSTDRLSFQVPELGD
LQIVTKRAVVSEMSRLFDPLGLLGPVVINARIFVQGLWAKRLTWDEQLSDEESQWWQAFREDLANLKEITVPRHVVANCG
HNYQLHCFCDASLKGYGSCVYVVGPNAAGEIESKLLIAKSRVAPLRGLSIPRLELCAALLGSQLIHNLRTTTDFIGTAVF
WSDSTVVLHWILSPPNDWKVFVSNRIAEVQRLTRGLPWNYVPSELNPADRISRGINPSQIIDDSLWWHGPPFLTDTTATW
LKCPSIWVINQETEQEKRAIVVLASVQDDNSIFDRYSELGKLLKVVAMCIRFGRNCRRLKAERVYGNITPQEVDTALKSM
VRLAQVNCFTKEIKILKRHNVGPSGPADFESKSPLKNLNVCLDQSDMLRLDGRLKNEAGPHDSKFPLILPANHQISLLIA
RSLHIRTAHAGPSLLLATMRQRFWPIRGRELVRKVVRKCITCFRCRPTDYHQQMAPLPAVRVVPSRVFSKAGLDYCGPFN
IRPLYGRGANVKMYVAIFVCLVVKAVHFEIVPSLTSAACINAIKRFVARRGRLIELHCDNATAFVGADRELKSLRRQYIE
QFKADEWKDYCLDSGITFHFIPARSPHFGGLWEAGVKSFKYHFRRIFATNSYTLDEFTTAATHIESILNSRPLTPLTDHP
DDLAVLTPGHFLVGEPMFSIPEPDMMNDQVPRLSRFQELRRSVQNFWKRWSRDYITQLHQRSKWRTSSPNIKKGALVLLK
QEDLPPFLWNLGRVDETYTGPDGLVRVVLVRTNRGVYKRAVTEVRVLPIDTTEGDQNPINQDAA
>BEL-5_DPu#LTR/Pao 2456-8133 Tandem 24 bp repeats from ca 1751-3090 in consensus. [Daphnia pulex]
MFPVSHAATLSASHPTMVTASHSATLPASFQPTLPASFQPTLPASHPATFSASHPAMFPVSHPATLSASHPTMVTASHSA
TFPASFQPTLPASFQPTLPASHPATFSASHPAAVSSSHPATLPASFQPTLPASHPATVSSSHPAMFPANIPPTVTASHHV
TFQPSFPPTVTASHHAAVPASIPPILSTDHPAMVPSSYPAMLPASYPGTYSHQTYPPPPLPQQQPAGPSRTTDSWITDPN
WNVTQSHPSSWLASKLPRINLAPYDGDPRNWSYFIQNFKCLVHDVVPDDAQRIIFLKDYLSEKVRNSIANSLRDPAQYRS
ALAKLQRRYGNPQLVVRAHVQSLIQLVGPKEGDFDALCVFSGAIQAAVADLSNGGHLHDLLAPGLLYQVTSKLPPALMQK
WGEEMCSLQPRAATLIDFDQWLESRVMAGTWAAPALQPTSNAGRTRERAPKGKEETKMPAVRHPRILHTSHRTSCVACTG
PHPLEKCNKFSKLSPKARAELLLEKGGCFRCLNPGHNSKACEKKVACGQDNCKSYHHPMVHGAPRMFAPPKSPQSDTPKT
EPATPAAPSILKKGKNFCITSKKTSPDQVLLAVVHLKIEANGYSFETYGLLDPGAEMTLVTKDVLRMLKLNPPREKMQMG
TLHGDGPLLSVQRADLQISSLDDSFSFSAYEVPALTTFNLHPGYVDWPKEKKKYPHLADLDLPPVDFSKITILLGSDYQE
ALEPLQIRKSTSESPGPWAIKTVFGWCARGPLYKADGQHSPPSINLIQNRKRPNLNEMVHQLWSIESFGTHPDVKAPISG
DDARALKLLEENVRFLGDRYEAPLLWKLDQPNLPNNYSVALSRFHTNDRSLKKCPVKAKSYEATINDYIMQGHARKLQED
ELEGPIGLTWYVPHHAVFHPDKPGKCRVVFDGASTFRGISLNSCLLTGPDLLTSLIGVLLRLRERPIAISGDIKGMFHQV
RVRSVDKHVLRFLWRPPHTAGPPDVYEMQVQIFGAASSPTVCSYVLRRAAADNEEEFPGLVEKVATNCYMDNYMDSFGTE
EEAIEFRNKFQDGLKKGGFHWTQWMSTSRKVLQSVPEDLRSDPKLNLNLDALPAEKTLGVTLNWQEDVFVFKVKIQTGSD
TYRTILSDVCGLYDPLGFWTPVTLTARILLQDICRIKPEWDEILPEPLLERWRIWVSNLHHLESVAVPRCLQPFPPTSVQ
LHIFVDASELGFGAVAYLLLQNKKTSTTVFVMSKSRVAPIHHLTIPRLELSAALLGARLARTIKNELRLKIDGEVFWSDS
STVLRWINSTHCRYHTWVANRVGEILTLTTPEQWRHVPGILNPADDCSRGVEASALTENYRWWTGPDFLLQPRTNWPAMP
EHFAQPVDDPEINLSKWAGNVSVPTPHPLLPILQKSSSMCRLKRIIAWVLRFIHNKLKPAAERRSKPYPIIPELREAETI
LVRLAQREGYGAEYKRLSEGKELDPGSKIATLTPFFDEEAKLIRVGGRLGYSNFPLAIKHPILLPADHHVTKLIVNREHL
LLRHATVERTVAGLHKKYWIPRSRVSVNRIIKNCFDCKRHRAKPDIPLMSALPIHRLQDDRPAFSNTGIDYFGPILTTVG
RRREKRWGIIFTCLVSRAVHFEMAYFLDTSSFLLAFWRFARRRIRPDVIYSDNGTNLTSGEKELKAGLDRLNQTAIANEL
GAQNIEWIFSPPSAPHFGGVWESLIKSAKDSLSFILQDHTFPDEVLLSALIEVESIMNDRPIGRCSTDPNDFSVLTPNHL
LLARANPSLPADVVYESSPNSRQRWRNAQIIADHFWRRWTAEVLPSLLKRKKWYVDRRHIQVGDLVLIVDENVTRGRWPV
SYVDEVYPGKDGIPRSALVRNKDGVYHRPVSKLCVVEESNLLISDASGNDAG
>BEL-5_DEu#LTR/Pao 377-4998 via tfasty with NINJA, 5 frameshifts and 31 stopcodons. [Drosophila eugracilis]
MQHSPRRSSRLNGGEATPTTTQQPASSAAENRPGVNITTAAAISRPATTATTVASQPRSTVTAAASSEPEVGQPPTAYLL
DRITALENELKQVRAMNTTSTANCAPIAVGPSANGANSGASERPPSWSGPPLAATLTATSNGEAQTNGVGPVPNSGFGAT
SGTYTLPPSWSGPPLLTTSNPLCATSAAQTAHGFVLPGGSTPIGTQGANGPRRLPDLPIFGGQPEDWPIFNCAFVETTQA
YNCTDLENNQRLLKALKDEARETVKSLLIHPANVRAVMEQLRFRFGRPEQLIRSQLNSVREVPPITEQNLARIVPFATRV
SNLTAFLQSAKAEQHLGNPTLMEELVAKLPTSKRVDWARHAASIEPFPTVAHFSVWLQEYANIVCTILDVEGKEPRRRVL
HASVDQDGYEQRDDRHGGCPICGGQHATTSCREFIGASPPGRWSMVKRHRLCFTCLRSGHTTRSCDVHGECQINGCRRLH
HRLLHGEDEGRRRPEQRGGFRRHNGGNQMSAVSRRSPARRSSPRGGCRDHERSQQPAVLRDNLERRAPKPAEAPGQGAAA
LQALASCALPLQRRSSRSLRGHQGDVPPSADPTRGSMFPTVPLERWQRRSRAGYIRNERNDVWSSLLAEHCALRQDGECP
EVSGFRSEGSQGHHRPPLRRxLRGxFRYGERSYxGIYPSEGDTRGGWIRAMPVLIQLTHRGSGVGTTWTSQERRMGxVxA
ENPWNALAGSNGxLQIQRGVSSSAKKRPKWRASPNKEGVFEPADVNVRPIGVPVLPDDYSEAVAAGDLEAEDPVGRTAAG
GDRQSLCCLAQRDGRRGTVPMSSPLFWAWSSLDHRATRFRGRKSICIRGGGLLEGHVQEWQRAGxLRVRKDEVCADENDV
HPTAGAAGSGPWNQSDEHCQGRTQCGHQRDGFMDGFKNGAEMDRQHPPPVxAVCWQPSGGDFGVVEGFPVEMGTYSxQRS
GxCDAVAEQGGPxPGIPVAKRSRIFEAASKRLANAxGGNRACSRCTxxRGDARxVRIGSIKxICHPVPEILELQSPGEDH
RLGPEVCATVPQTEKRARGIWTHCNGVxGRGEPVNQAGPIGVVSRRDEVGGTRKGRRQLERDSKSGALRGQIWSSASLWQ
SRCRAVHAVQCEEACDTVTQAQSYGDGSKTLPRPDEASKRGCDDCPDPDEILGHEDKTSAEGGNSRRATNASYNGRGRCR
RxWDPFQRIAWKLEDGHSSTQDxTTLGHCWxLLLVTERSVGSPCSHAxRQGRFIWTGAxPVNGFLYNSDQELRLPxRTST
xTAExQRQELRGSxQGGQAIWRRVRDGKDTExVIQQEHxMGLxLPIQPVxGRSMGADGAVRQASAAPYPEGSRAEGPCFG
ESPNRGGKHSQFASAHPLATGCGPRGAVDAKRPAQGSSxPAGYARMGCGAAKEGSTRKQWRIARMLRDRFWRRWVMEYLP
TLVRREKWCRRTEPIRQGDMVFVCDPALPRREWRKGIVEEVYSGADGVVRRATVRVNDNGLSWTMFATVRVNDNGLSWTM
SRPVSKLAVLDLSEAGLHGVG
>BEL-9_CQ#LTR/Pao 429-5927  [Culex quinquefasciatus]
MQLRSGAKKCLFFTPCGKSPGSPVLRVTTPVLSVREQLEARRAEKTRIAMAETVAALASCCEKTKAKVTRIKRAVLTAEQ
DHKKFSVHALKLYLKTTDAAYEEFNSFQNKIYLADPTKKDEFEPKFIDFEELYEFTRIALCEMLQAYEDDEKAALAAAAQ
VAAERAIKPVVKCQHGDSSSSVPVSFPPTLVLQQSALPTFDGRYENWFRFKQMFCDIAEKCTADSAATKLHYLDKALIGK
AQGAIDQQIIRDNDYAQAWVSLQEQFENLPALVNDTVSRLLGVKAMMSDSYVQLKNLLDDVEKSVNSLEYHNLKMDRLSE
AIITNLTASKLDMATRKIWESSVARGALPEYKKMMKVLRNQQAVLERCERAKPTQKTKVTNSNPRTSTPPTKAHTATVGK
HESCAMCNAEHLLEKCEAFLKLNVNARYGKAKQFGLCFRCLKRGHRTADCKQKDKCSECSRAHHTLMHPDSKKEPEKQPP
ETSAAGTNASSATVSKDGSTSTNCPLYCNTNETPKQVLLATAVVNVVDACGVQHKCRALLDSGAMANFMSQSFADLLNLK
KMPANVPVVGVNGMETVVKFKVEAKVESRTTAYNFCLNYLVMPKVTGPLPVDKVEVERWPIPKDLALADERFYEPGRIDL
LIGAEVFFELLQSGKMMMSAELPILQESVLGWLVSGRVAETGTTGTVRVCHALAKQTPEAQLAGLLRQFWSVDEQEFPAT
TSETSSDCEKHFLETHSRNESGRYVVRLPFRSNVGELGLSREQAEKRFYALERRLDKNANLKQQYKMFIDEYISLGHARV
IDDAKADANYLPHHCVLKPDSATTKLRVVFDASAKSSTGLSLNDVMMTGPTVQRTLFDIVLRFRCHKYVFTADVPKMYRQ
VEVHEKDRKYQQILWRDDHQQPLRTIELSTVTYGTAAAPFLATRALNQLALDERHDFPEASTSVLNNFYVDDVLAGADDL
CQAKQLQQDMIEMLARGGFQLHKWCANHAALLEEIPVENRAKTLNFEKNDEGEVVKTLGLLWDPVSDVFKFSVKPFKKST
ERPTKRQIMSDIARLFDPLGYLGPAVMIAKLVMQQLWKEKFHWDDPVPEDVAKMWERFRSELCEISELKIPRAVAAAVDV
TSYELHGFADASMKGYGCSVYLRSLKRDGTAEMMLLCAKSRVAPLKELNRQPKDDAELEDLTIPRLELCASKLMVEQVVK
VLDAVELDISRVVLWTDSQIVLDWLKRLKPDTSVFVRNRVAAILKLSKKFEWRHIPTALNPADLISRGVYPLKLIVCDLW
WHGPEFLRTTVATVQPPNLVADEANPDGDQPGDPDPEIHVLAASTDTNENPPLAVINDCSDYRKLQRIFGYVTRFLYNCR
HKPAERRGSYLKIGELRNAQLLMVMVVQHAVYGEEISCIRKNQPVKGKLRNLNPMYDETERVLRVGGRIRHSDLPRDQKH
PMILPERQHLTELLINTLHRENLHVGRNGLLAVIRRAFWPVNAKRTIYRVLKMCVQCFRVKPSDVPQFMGDLPSSRVTEA
LPFSRTGVDYAGPLLLKQGRMRSPVKAYIALFVCMTTKALHLELVTSLSAEAFLGALHRFVGRRGNVSVMRSDRGTNFVG
GDRQLKELHELLKTQLLERKIADFCQVRGIDWKFNPAKAPHQGGLWEAGVKSVKHHLNRTLKEAYLTYEELNTLLVQIEA
ILNSRPLCQQSDDPCDYQALSPAHFLIGRELTAVAEPLYGGVRENTLTRYQIVQKRKQDFWRRWSRDYVTELQKRGKWDK
APAMIRIGMLVMLKEDNTPPQTWRLGRIVDTHPGGDGVVRVVTVRTSNGATFSRPTTQIAILPIQDNEEEKD
>BEL-31_CQ#LTR/Pao 41-5772  [Culex quinquefasciatus]
MADENPDFTETPCSTCKEVSTEDELMVGCDSCKLWFHARCVNLNPADKKSGKKWYCPDKDCQKKKKTKKSVEVPLPLPPE
LQEKLKALEETRKRMEAEQEMERILKEKELEMAVYLQERQMKIDEELREREFKQREANLEAEMQKKEEHLKRIQKLETTF
RDKSASIDKLLQNSSTPLRNPEVKPLTTENLGKHDNGENSGGTPSKPASKKTSSRSSSGSSTTSSGSGKGEADTKGDGND
EKSVKPGKAEDSGEKPDGLGQHGSGPTKAQRAARQGLTRKLPDFHGKPEEWPLFFAAYQASNEACGYTDVENLVRLQDCL
KGRALEEVRGQLILPKSVPRVIAKLRQIYGRPEVLLQSHLQRVRKLEPPRADKLGSFIPFGNAVEQLCEHIEAAELTAHL
VNPILIQELVDKLPDGEKRSWVHYKRKKREVNLRTLTNFLSKIVEDACEATVNLDYKPDVRAASGPSGRSRNKEKAALFN
HSVAEECTERREQKPQKLCRVCQRMDHRLWTCEDFKKLPYEDRAKMATKWKLCQRCLNEHGGQCKLKLRCNVGECREPHN
PLLHPETRAVGMNAHITSTSPVLFRMLPVKVYCGERSMTVLAFLDEGSSLTLIESGLADRLGLLGTKEKLTIKWTANITR
VEQHSRRTNIWASAINGTNGEKLLLQSVRTVDKLMLPRQTLNAAEVSSHYDHLRGLPMDSYDGRPGMLIGLNNIHSFAPL
ETKVGTIVDPVAVRCKLGWTVYGPRDAESAGASCFLGCHQEVTNEELHDLLKSHYSLEEAVVTVQRESVEDQRARKIMEE
TTRRVGDRFETGLLWKTDDVKFPNSYPMAVKRMKQLEKKLERSPELYDNVKKQIEDYQAKGYAHEATAEELNGTNNNKAF
YLPLNVVVNPKKPGKVRLVWDAAATVDGVSLNSMLMKGPDLLVPLVSVICGFRERRVAFGGDIREMYHQLKIISGDKQAQ
RFLFRDNIKEKPKVYVMDVATFGSKSSPASAQYVKNRNAEEHAGQYPDAVAAIINRHYVDDYFDSVDTVEEAVKRAKQVS
HVHKKGGFEIRNWVSNSPEVLTALGEEKPMSPVLLNQDKQTPSERVLGVRWDPELDEFAFAVMHREELMKYLKEGKRPTK
RIVLSCVMGFFDPLGLLSPFTIHGKIIIQHLWRTGCRWDQDIDDEAWILWKRWTALLPEVEALRFPRSYFGDAMSTSVES
LELHIFSDASELAYGCAAYLRAVIDGQVHCSLVMARSKVAPLKRQSIPRLELMAACMGARMSQQILGTHTLQIDRTVFWT
DSRTVLAWLHADPYKYKQFVAFRVGEILELTRLDDWRWVPSKKNIADVLTKWGPGPPLQNDSEWRNGPAILFEQDDDSPP
EQIEETNEDARGLVLFHGTVNVEAVSTWTKLVRVTATAVRFIENCRRRKDGRPVLTAKATSRLAKLVKAQHETEVQPLQQ
DELQKAERILWKQAQFESFPDEMSVLTKNLQLKQGELPEKIERSSPLYKLLPVLDEDGVLRVRGRLEKNESIPFDKRFPI
ILGRKHAVTKKIIQHYHEKYGHANRETVFNELRQKFWIPNARAAILEVVKECVWCKVNRCVPFVPTMAPLPVERTAATMR
PFSAVGVDYLGPVEVTVGRRREKRWIAVFTCLAVRAVHLEVVHSLTTQSCLMALRRFACKRGVSEKVFSDNATCFRGADA
AITKEINKECAEQMTSPTTSWSFIPPGTPHMGGAWERMVRSVKEALRALDDGRKLTDEILSTSLAEAEDMINTRPLTYVP
QDSAEEEAITPNHFLRGTVTSADLKVDETVDTAAALRDVYKRSQQLAGKMWERWSKEYLPSLNRRPKWFEDRKPLEAGDL
VFVVDGKNRKSWVRGRVEEVFKGSDGRVRQADVRSADGKVNRRAVANLAVLEIMDCKSDVLECPTDVTGW
>BEL-21_AG#LTR/Pao 131-2878 Fragment (N-terminal half) [Anopheles gambiae]
MRRTLRVEQNLPASPETPQESGNVSGGPRYDPSSPGTSSTVTTEGSTPRSDATTTNVAVLCKEGQSKGISSPFHALNHGA
NQGRDDIRESRRRRLQEIEHEMQMLRDAEDENGSAAIAEHPNHGGTGGTHYPEFAGWVKSFEESLRRIYPAGKALTQGQI
PGGNDLGQRAAAEQAQLPQPSPAIASTYATLPSQRMHPHATQTLPHATHSHSAHTIQTHPTYTSHTHSAHTILPQHEYVQ
PHFNTSTLSQSQIAARQPVPRDLPIFSGEPEAWSFFIATYNRTNTACGYTDDENIGRLQYALRGAAFEAVGHLLSFPDGL
NEVMATLKARFGRPDLIVESMTEKIRKMAPPKIERLSTVVEFGYAVKRLVGTMTASGLRGYMYDVALLKELVRKLPPVLC
IDWARTRSKLSEVTLLEFGKWVGDLAEDLCGVVDVMSIMDNSDSTHQQPEPPTHHSRTQPQRFQPHRAPPAQLDRRPPIR
TGRVHLAYCNATVLQDENLGDPSSSQNTPELLTVCPLCGRDCPTLVQCEQFQRTTVAARRSFVGERRICRKCLGYHRGGC
SVRAPCAVNGCNRQHHELLHVNDQTPASPHQRDHLNGSGKVVYTGVANVLTHSGPKDSSLLKYVPVTLHGPRGRIDTFAF
LDDGSTSTFMEHGLAQELGVTGTPYPLCLQWTGDVTREEQDSVRLSVRISGRNMSHAIYKLSEVHTVKELALPEQSVNVA
QLTARYTHLRDLQFESYASAVPRILIGIDNCNITRTLKTVDASCNEPVASKTRLGWVVYGPCSVASAKPSPSNRSFSGRP
FHDLSCNSASDKAVRPLRPRDDERALAILERETNGQRYEMGPLWRYDSVNLPYNKKAFKRDGFLKQKMAKYSKLANDVNR
TNVAEFLPTLHHRTERSEPVRPTEIGDIVVVACNNS
>BEL-42_CQ#LTR/Pao 346-5696  [Culex quinquefasciatus]
MPKSSAKAPATSPGSAEFGNSATSSTPVVKKEKKKRKLQDKIKMEIETLVHRRGLAKGKVTKILKAIRPTETAEVRQLSE
PQVHVYMKKLETAQKEYMSNHESILAMVDMEGRKQADKHYEEFDDLHDKVALMLEEQLLGFNATRANGTLNATAPPQAPQ
PPVIVHQPLRMPIPSFDGRYESWPKFKVLFKEVVDKAPDPPAVKLYHLEHALVGGAVGSIDAKTISEGNYAHAWEILEEK
YGNKRHAIDRHINGLLNLTKMNKENHVELRGLVDECTRHVESLKFLEQEFTGISELIVVHLLGAALDKDTRRRWESEVKK
GELPQYDQMLEFLKAQCFVMERCEDLKPKQPTVQPKPAVKSSQKSYAVSTSESETRSEDRCDICGKGHKNHACPDFKALP
LQQRMVKVREHNLCFNCLKKGHSSKKCTSPGTCSKCKRRHHSLLHSEERPKSEQKVTQAPPEQAPEVKQQEAAQLTTASC
HNETPTQEVLLLTAVVDIMDRNNKAHPCRVLLDSASQANLISRAMVEALGLKQFPSNVTVAGIDGTKTHASSGSVVQLRS
RYSSFSANIKCLVTERVTADLPTSAVNVRSWELPPGIQLADPSFHQPGKVDLLLGNQLFLKLLMPGEVHLAEHLPMLRET
QFGWVVGGVCDEEDEAAAVVHSHSATLEDLNRTVQRFWELEEYESDVKVSSEESECELHFTETHRRDATGRYVVELPLKE
SVAELGDSRTMALRRFYALERKLAQQPELKKQYVEFMEEYEKLGHCKEIQEGEDPVGLKKWYLPHHAVLRPSNTTTKCRV
VFDASAKVNGLSLNDVMKVGDLNQSSLVSIVLRFRFPRYVLTTDVAKMYRQVLVDERHTPLQRVFWRTDPTKPLRVLELT
TVTYGTASAPFLATRALQQLARDEKHRFPLAAKIIEEDFYVDNALFGFDDVSQASEAQSQLIQLCKAGGFELHKWSSNCP
ELLEAIPEADREELVSVGGTGTKEVIKALGLLWNPAADELQFAPLPSERDGRPTKSQVLSCVASIFDPAGIAAPVVLVGK
LLMKGIWEKEIGWNQQIPEELVKEWEHFLDAVRDLDKIRVPRRVVATNAAANELHGYADASKHAYGACVYVKSIIPGSPA
ELNLLCAKSKLVPKTLKTIPRSELLAARLLHRLVKNVLEAVDFVFRKIGLWSDSQVVLAWLKKKPDQLEVFVKNRVAEIV
ATGGIFEWKYVRTADNPADIVSRGMSATKLATNEKWKKCAEYQRSEICEMEEPEPLPDDAVPELRRAVVVSAAIQYETFQ
STFERIESFRELQRIFAYVVRFCRNCKEKVKERRIVSRYPTIPEMRESQKAILRAVQHLEFAAEIASLEKGESFKKLNCL
NPFLDDGLVRVGGRLRHSRLPYATKHQWILPQHNKVVQNLIRCIHKENLHAGPLALLAAVRRQFWIPNARSVVRKITRSC
VQCFKVSPTTAKQFMGDLPTSRCDRALAFQKVGLDFAGPFLIKQAGRKAAPVKGYVCVFVCMVTKGIHLEAVESLSTEAF
IAALLRFVSRRGLPEELFSDNGTNFVGAKHELHDLYKLLQDQLTERKIFEFCQPREIQWSMIPPGAPHMGGIWEAGVKST
KTILKKVCNTALLTMTEFATLLCQIEAQLNSRPLYAQSEDPSDPEPLTPGHFLIDRPLTAIPEPTYEEIPTNRLSRWQYV
QVLRDNFWKRWSREYLVELQARGKWTRKMVNVRKGMVVMIKEDNLPPQSWRLGVVTDTYPGPDKMVRVVDLRTRSGILKR
PIHKLAPLPILDNAETTAASGGE
>BEL-48_CQ#LTR/Pao 1249-2811 [Culex quinquefasciatus]
MELKSARSLTIKRNFVKGKISRVVDRLKAFEENHQLPSFAQIQVFVWNVEKYYGEFNKVCDEFKVSDADAGERFNHDIEW
ARVVSLIQEANMRIVALNNALLSQPVHAAEKQPVLKEEANRTPLPTTEARGEVDSSGAGDLPDAANAERCHADDREPGAP
DTKVGAHFELYSSPPIADSERNEPMCTLCNGCRSDIDCFPVRGDPVEQCQPLEESNPNLSSQKRLPGESHEPETQPAVHA
ILPPEEPEVVPHESSSDDRGSAETKPGLCSPQRLPGDSREPENRQEESSKEPAVVPHESSAAERGSAVSDDPEAVPMPEQ
AQHVDVVPDVDTCQAVEGVSLLPAVPDDENNEEGAQCGCTEPARSSVQVVWTTNQNARKANKNIEIDQRTCTSHESVTYL
YSQRTELYERCCGDSIARSGADGADEPGRAVEKLHDPAIFSSTTKRPRFVWDPGVELNAAFAPYNRGRPPTDANRCKELL
ARLVAMNLEPSAINGISQYERLRPAQRVGEAEAVTPQPGGR
>BEL-45_CQ#LTR/Pao 341-5822 BEL-35_CQ and BEL-46_CQ encode closely similar N-terminal fragments of this protein. [Culex quinquefasciatus]
MWRSLLKLYPEPGSENEKEEEKLAVIVPVPSPVKPLTPKKLWEKKKAKMADGEVKALSKKRSQVKGKLTRILHAVQPSTQ
PGALPGAQAREADVLPPQLRVHQRSVEKYYGEFCELHNKIMDLVEDDEGTKQQEAKWVEFEELYNRTLVVLETLLTAHDR
PTQAVLPAGQAAQQVIIHQQALRAPLPTFDGRYENWAKFKAMFQDLMRSSPDSDAVKLYHLDKALVGDAEGKIDLRTIQD
NNYQEAWNQLEEQYENTRLIIDLHIQGILQLKKMDKRSSKELRDVVERCSRHVEGLRFHKQELLGVSELIVVNILAAALD
RETRELWEATIEKGELPTYQATVDFLKKRCHILERCEQSDPVASAVEPTISKKLPSKPSAKMSAAAMTTSEVKCELCGGN
HPNYKCSTFCSMSVPQRLAKLREVRACFNCLRTGHHIKTCPSEKTCKCGEKHHNLLHMDKPKEQASSKSEASPIPQPTTE
QAAGGSGSVTAAVADANPKQTTSCCSSGVLQTSRPVLLQTAIIDVMDKHGRLHPCRTLLDSGSQAHILSAAMARTLDLPL
MKCNVTVIGANAVKTPARRGVNLNFSSRYSDFQDTISCLISEKPTGIIPSGRIDASGWGFPSGLQLADPHFCEPNDIDLV
MASNYVWDLLRTEKVKLHNGTVTLRETDLGWIVTGTYDPFDQVSQSFVHSNVVRLDALKEAVEKFWTVEELAETAPPSAE
NNDVEKHFVETHHRDESGRYVVQLPFRDTVSELDDNRTLALRRFSQLERRLSRNPDLKLQYSAFIDEYEALGHCKEVFEE
QDPPDTKKFYLPHHAVLKPSSSSTKLRVVFDASAKSSRYSLNDVLKVGPTVQSDLFSILLHFRRYLIAFSADAVKMYRQV
KIVPEHRPFQRIFWRKEPSDRLRVLELNTVTYGTASAPFLATRCLTQLAESAKDRFPKTAKKIKEDVYVDDMLSGADTAE
EAQTCVKEVKELLAEGGFQIKKWCSNSEAVLEGVPEEDREILVKIDECSVSEGIKALGILWDPKQDEFRFQNVLSESDIL
PITKAKVLSDIAKLFDPLGLISPVIVCAKVIMQKLWADKLGWTDPLQGELLKEWLDFRSSLDGLKDIRIPRCAVVPGAVR
YEVHGYSDASTVAYGACVYLKCFMPDSKTVVSRLLCSKSRVAPLKQLTIPKLELEAALLLSLLVVKVLATLDLEIAEVVL
KSDSQIVLAWLRRPLDTLEVFQRNRVAKINALTKGFTWAYVRTNENPADFVSRGQLPAPLSRNNLWWEDTPSTTTTAVDP
APILEQELPGLVASLSNTVESELLPVFTRFSDFRHLQRVVAYVCRFIQNLKSKRAGQPTCRTNYLTIPETRKALKCIVRC
LQVHALLEDYNSVKQSGAAHRLARLAPILDSDGCLRVGGRIQKSSLPEEAKHQLILPRHPVTESLIRAMHIENLHIGPSG
LLAATRQKFWLLAGRSITRKITTKCMCCFRAKPRGIEQFMGQLPDERVNVAAPFEFTGVDYAGPMLVKQGKYRPKVVKAY
IAVFVCMATKNVHLELVSELTAEAFIAALERFINRRGMVRKLFSDNGTNFVGASGMLRDFYRLLSSDLLLRELHELLLPK
EIEWSFIPPRAPNFGGLWEAGVKSVKTHLKRTLVNATLTFEEMATMLTHIEAILNSRPLYSASDCPGDALPITPAHLQIG
RPLQSVPKPSCSSVPDNRLPRWRYLDKLREHFWDRWSREYLTSLQVRGKWHKKTANVRPGMVVLLIEDNLPPQSWKLAIV
IKTYPGPDQLVRVVDVKVGNKILQRSISKLAPLPTEDNDQLRQVPEPSGLDEIPSLEEASASQSGRR
>BEL-20_DAn#LTR/Pao 171-5763 via tfasty with BEL1_Dpse_frag1, 2 frameshifts and 1 stopcodon. [Drosophila ananassae]
MDDEIRNESGDLNIGVEDGSWRSSGCSLTGPFAGFDNGTLSGQTVTNLGQFVSLEGTSTPISTDPTNHVVSQPHGEIATQ
IFEHHTNTGISRNVHWVTAPNMQERTARSPIPTTVIGQSIDAVQAAPTMSAAGFIPSNATQTVPMWNTAGYLENDVAHTA
PPKGAAVCISYSAAQTAPPQENDVAHTAPPKGAAVCISYSAAQTAPPQNAAIWMENNAAKFGFQGNSAGFVPSAARIGLT
PNVNPNTAGSNPYSAAFNTGGIGGHMPPFSNTQFVHAGSCTTMLTPAQVAARQVISRELPAFTGKPEEWPAFISNYEQST
ERCGFSNEENLIRLQKCLKGAALEAVRGKLMVPAMVPYAIGTLRMLYGRSEIVHASLQRKLKDEPAIKPNNLESVIRLAL
AVQNYCATMLSVGLQEYLNDSTLLSELVAKLSSWGRHRLAAGGGNLVTFDNWLFGVAMCATMVTPYDYQTTEKDKGSRHI
KERLLVHNIAEGSSKDKQKIEDPTKSLCPVCDGEHDLSECEGFLSMTIRTRLEVIKAKRLCFGCFGNHTARNCRVKKPCN
FDGCKLLHNELLHFCPTIKFDVDSEELKKEETKESALFFHGRQNEVLLRYIPITLYSKTKRVNIFALVDEGSSCTLMERQ
LADELGLDGPEEQLCLKWTGDLTQTETKSKVVCTSVSSGDHPHLRYVLKGVRTVSNLDLPVQSIDDQMLNNHQHLKSVPV
STYIGVKAQMIIGLDHIKICVPLEVREAENYELVAVRCKLGWSVYGRYGLDEIIPPRVLHICQCSGGTRTLDEAVKAYFS
LDSIGVSVPLKPLRSKEDERSLKIMNDTTKYIANERRWETGLLWRYENVNLPDSYPMALKRLKCLESKMIKDPDLSNFLI
ETMQKYAEKGYIRKLQRGELATSRCSWYIPVFVVTNPNKKKKRLVWDAAAQVNGLSLNDTLMKGPDLLVSLPxVLLRFRE
RPVAVTGDIREMFHQIKVRASDQSVQKFLWRNGENDRPPDTFVMQVMTFGASCSPSLANFILKKNAEQFGDNCPDAIRTI
CQNTFVDDWLESVDTDDEMIQLANNVKMIHAKGGFEMKNWLSNSKSVLQSLNSSPAASPKYLGSEQELQEKVLGMWWLPE
SDMLTFVIRPELLQKSVTSTHTKRRVLSIVMSIFDPLGLLGFFNIRAKIILQNIWRSGVSWDDTIKDSDENDWRAWQSSL
SKLSNLRIPRYMYGSKAAENVQLHIFVDASLDAYAAVAYLRVVRGGEIRCSLVASKNRVAPLKPISVPRMELMAAILGLR
LSKFLEAELSIRIERRIFWTDARDVLFWIKSDVRKFPQFVAVRVGEILEGSEVIDWRWIPSELNVADEGTKWTKNCEMTS
SIRWFTGPEFLSQNESRWPSQIGTPVSSDDTLLYHADMVRTDPSPITSIMPNPLCFSRLERLRGAQRRVLDFIRYIQVRQ
PGPELKRILELKRNVEMDTVFIRACQEETFIDEIRCLKKDGRVSNRKSSIFKCSPYLDESGVIRMQGRIEAIDNVEVDVK
RPILLPRHHQVTYLIVEYYHRKFHHLHGEIVVNEVRQRFWIPGLRALVKETVKKCVSCSIRRAQPLPPEMGYLPKERISP
YTLPFTYTGVDYFGPIEVAVGRRREKRWRVLFTCMTVRAVHLELVPSLSTDSFLLALKLFTARRGVPIKMLSDNGTNFRG
ASRVLAKEIERISTLDVESKYPQMTFAFIPPGSPHMGGAWERMVRSTKSILLEILSNVVLREEVLRGAFADVENTLNSRP
LTYIPLESENSEALTPNHFLVGNSSGLRERGMMEVTGHALAKQLRIAGQLADRFWKRWIREYLPTLTRRKKWFHPNPTPL
AEDDLVLVVDETSTEHLAKRNHYGC
>BEL-12_DWil#LTR/Pao 537-5794 via tfasty with NINJA, 4 frameshifts and 6 stopcodons (after deletion of an in silico duplication). [Drosophila willistoni]
MGDTRVRKGTTMTTRHSPIRRSPRLNALEALQEPDAAIDLPVDTGENATDEAPTANMNIESSIVAGIPEAVGADEHQETV
CSAQPSGFQEARLRARIAELERQLQMVTRPATRAEGPPSLITDTMPATHRLESDRPINGLQPPLINTRPELPSTIGTMPL
ISPNTVGGWMTRKITELPEFSGLPEDWTIFYCAFTETNSVYGCTDLENNQRLVKALKGDARETVKSLLIHPRNVNAVINQ
LRFCYGRPEQLVRSQLQSVRDVQPIQEHNLAKIIPFATRVSNLAAFLQSINESRHLANPTLLDELTSKLPLDKRVDWARR
AASIKPYPTVIDFSVWLEELASVICTIVDSDPREGKRRILYTKFEEETRVEQHGQPCPNCYGSHDITECAEFRLASPTAR
WRLVKKYRLCFLCLSPGHVVRKCTTKSRCHIGECGRAHHNLLHDFESNYRQASMSKAGHGSPTRPQPVPNNGKQPSPEPR
SQQPTQQMNLSCVDTKTTQLLFRILPVTLYGSNRRVETYALLDEASSVTMIDEVLLKDLGLNGERSQLAVKWFKNMTTQE
PTKRINLHISGHDKNTRLEYELKNVHAVDGLDLPMQTLNQDYLQVINPQSRFPVEAYTNAVPRILIGLDHKYLVVPSSTW
ETSNKGPYVAVTRLGWDVSGTFHKHQHTSAPKPCLFAATDTDEVHKMVSEYFELENLGVKPTPPAPSDDDIRAQSILNET
TVELLGRYQTGLIWKRDNVNLPSSYKMALNRLETVERKMERDKQFAQEYKGMINDYISKGYARRVEREEDTAVGSGKIWY
LPHFAVTNPNKPGKIRLVFDAAAKVGNVSLNSELLKGPQHYRPLLSVLFHFREGAVAVIGDIKEMFHQIYVQPQDRRSQR
FLWRDGDRQREADVYEMQVMTFGAACSPSAAHHVMTLNAMRHQQVDPRAVKAITDYHYVDDYVDSFATEDEAISVSARVR
DIHKTGGFELRRFQSNSPKVVESLGQEGTTNPVGWAEAEEKILGLYWQPATDEFRFNVKYQRIKDDVPTERQFLSLIMST
FDPMGFLSCFTITGKLLLREIWRRNVLWDEPLPKELNSAFQKWRHQLEGVGLFRCPRYYFGSEIVKSIQLHVFTDASESA
YAAVAYWRATYQNGDVQVSFVCGKTKCAPMRTMSVPRLELQAAVLGTRLMNAVKSGHCMETEDAILWTDAKMVLRWICST
HRRYKQFVGNRVTEILESTDASQWRWVPTADNVADEATRPQGQVDFSQKSRWMCGPKFLQQPxDLWPQSTTDLTDIEVAA
DVEESPCEFALVVANDEFIQFQRFSEYSRLLRTMTWVLRFVCRCRRQQHEHGKYGLTAAECAEAELVLVRVAQREAFPDE
LHRLYANRPVQPTSELKGLLPYLDDLAILRASGRIDAALCLPYGARRPIILTHRHPLTDLIVRHYHVRMKHQNVNATITE
IRMKFWITKVRRVLQRSYPELWCVQTPACNPNPTFNGSVAxRSPKTGLMAIxVHWFRLFRTTTCDSGSTPREEVGGSIHL
FKNxSNSPGVAHDLSTDSCILAMSRRGPVTKLRSDNGKNFIGADREAKRFTDVFEADKIQDELATHCVEWIFNCPLNPAE
GGVWERMVRCVKRVLAHTVKDVAPKEHVLQSLLIEAENIVNSRPLTHMPISVDQEAPLTPNDLLKGTSNIPDTPGIVKSC
LNRVKPGSNGAWHDYxGTGSGSGGFMNTYRPLCVARNGARAPSQSERMMSSTSVTLQQGARVxSRRYTPEQM
>BEL-12_CQ#LTR/Pao 798-8087 via genewise with BEL-592_AA#LTR/Pao, 2 "introns" (1901:2104, 3068:4786) [Culex quinquefasciatus]
MDATLKATLQARRVSLLAALGRAESFQAEYDHERDQMEVQLRLAHVEEASAKLEDIQQQLEDDETDEAGKAVHEGIRANF
ETRLFKIKGFLLSKQRLIPQPRNPSPPQASSTLSGIKLPTITLPEFDGDYQKWLAFHDLFVALIHNNPDLPDVQKFHYLR
GVVVGKAAGYIDTYDINAANYQIAWDTLVERYNNEYLLKKRHLQALFELPPMEHETASSLHSLVDEFQRHIKILDQLKEP
TASWSTVLEHLLCTRLHVDTINLWEDHASTLSNPDFQSLIEFLQRRMRVLESISVNNNHSSSNAATSSHQSPRTKKRSSQ
RLSSYASTASSGSTADCAACGLAHPLYKCHKFGQLSVSERQRIVSSKHNCYNCLGAHQVRNCSSKRSCRHCQQRHHSLLH
AGHADNSPRTNSGAAAPTQASGHLEVSASVVSAKQEVVTPTEVVPQVEVSVPLQQPKENVFLLTVLVKIVDSLGMEHVAR
ALLDSASQPNLITDRMAKILRLKRAPASVVIQGAGQMSTPVRHSVSTEVRSRKNDFSCGINFLVMDKLTAELPSQNISTS
GWNIPVELFLADPTFNERQPIDMVLGAKHFYSFFPGAARIHLDGSLPILVDSVFGWIVTGSASQAPSTPTETAHSYSVLA
MMSLEESMERFWKTEELTINDKLSVEERDCESLFQSTTTRTPEGRYVVLIRNAHVTVRYPRKPGFENLLGDSKTAARRPR
FRLLERRLERDAQLKEDYHKFMREYVELGHMQLAEPDEKDKTPSCYLPHHPVFKDSSTTTKVRVVFDGSAATSTGLSLNQ
ALCVGPVVQEDLLSLLLRFRNYPVALVADAAKMYRQVLVHPEDRRLQRIFXRFSPDSPIQTYELQTVTYGLAPSAYLATR
SLQQLAQDEGHEYPLGGPALESNFYVDDFIGGADTVEDAIRLRKELTELLAKGGFEMRKWTSNRLEVLRGLTQDQIGTQS
SLQFGPNEMVKALGIGWEPEADVLRFDSQINQSKGPPTKQFILSTIARLYDPLGHIAPVVVTAKIIMQECWQLKCDWNDP
VPDNIRIKWEKFFKELPEIRSYRIDRYALQPDSTYQLHTFCDASKDAYGACCYIRCEDRHGNVRVTFLASKSRVAPLRGL
NVPRLEANAAVLGVHLHFRVKQALKIKISDSYFWTDSAVVLQWIQANPNTWKTYVANRVAEIQFYTRGCHWNHVPTKDNP
ADLVSRGMTVPNFLNCETWKNATSWICSNPRDWPRTNPPSVPADIMEARVVAAVTEKPPQVHPWFLRWHSYRRLVHSIGF
VLRFIDNTRQKARTTRTSDTPVPRALTVEQFAKAKTVLTRLAQQDSFSAELKELENGKPVSKQSNIYKMSPFIDAERVLR
VGGRLKLSQLPFQAKHPALLPGSHPFARILAEFYHQKLFHGGGRLLLTAMREEFWPIGGRILARSVVRNCFRCVRLNPEL
VQQQIGQLPAQRIIPSRPFSVVGVDYAGPLYLKPIHKRAAPAKAYICLFVCFATKAVHIELVGDLSTPAFLAALRRFIGR
RGVPSHIHSDNGKNFEGAKNELARLYTMLTHDAEQEKIHEFCTAEGITWHLTPPKAPHFGGLWESAVKVAKKHLFRQLGP
SRLSFEDMCTVLTQIESHMNSRPLLPLSEDPNDLAALTPAHFLIGTSMHALPDPDLRHIPVNRLDHYQHLQLHAQQFWAH
WRREYLQELLRDTKGYQRNDEIQPGRLVIVVDELQGPLRWPLARIEAVHPGPDGIVRVVSLRTASGGIITRPAVKICLLP
VPQSPEAPHTTPQPGQLPTDAVFPEEEKH
>BEL-13_DEl#LTR/Pao 1304-6656 via tfasty with BEL1_Dya, 4 frameshifts. [Drosophila elegans]
MPIGEGEESKVQLIVPTAGTSHRVRAHKAESSKTLSPSIKISRPSRTTSEKSVSSLKSVTLPKTRSTAKMAQADADIALA
KFVTLTDRVSQFEARVNTPADQLPSVHTNKVRLEQIRALWDKVEREFETCSAVLSVLKCKDTITVMQSKYDYCYSVFERC
AATLSETIESASVQQLSQPSTPAPRPSGCRVPPIDCEIFSGDCVHWPTFRDLFFAIYVQNPGLSGVEKLFHLNSKTSGEA
KSIVALSPLTNEGFESAWRNLQNRFENKRLLVNSQLKILFNLPSVSQECGKSLKHLESTVQGCLTALEIAEVDTTKWDRL
LVFLCSSRLPKLTLSLWEQSLLQPSEIPGWNDFKVFLQGRHRTLEAIEEFKPTVAAQSRGPRAESGPRIIHNFENRVTVN
PQSCRLCSRENHPIRMCPQFQNMPVADREQYIKQQKLCLNCFARTHMLRDCTSTHNCYTCKGRHNTLLHRGGPQQLQSAP
VPDLQPPLQSASIPDHQQSIQSTQSNVQTYLAVNTQGVLLSTALIEICHSGIRYSARALVDSGSEATFISERLFNLIKLP
YESIQAQVAGVNQTVAAQPRKRCQFNIGSQHRPHIQLEASAYVLPHLAGNLPSYTIPEGSLRDLPNLQLADPNFYQSSQI
DVLIGADLLPSIILGGFQSNVCGTLLGQETIFGWILCGPIAKNPTNRIASFSTRLSVTEAKLDSILTKFCEVEDVPVKLV
EESSSVCENNFQQTTKRDEKGRYVVSLPFKEPSNINLGHSRPIALAQFLRNEARLNKNATLKEQYDSVIQEYLDLGHMHL
VSPNDGSNNFYLPHHAVFKPDSTTTKVRVVFNASNPSSNGYSLNDILHTGPVLQSDLTTQILKWRFFKYVFNADITKMYR
QILVHSDHTRFQRILFRDKEGKLSDYELNTVTFGVNCAPFLAIRVLQQLAQDVLDQYPLASDIISRFMYVDDVLAGNHTQ
QSAVLAIKELRLALESAGFPLRKWTSNEKGLLQGIPKDHLISSDFLELEEASMAKTLGIRWQATSDSFFFLPREISLQTD
YTKREVLSQIAKLFDPAGWLSPFIIRAKIFMQEIWLRELSWDQPLPTDLVTRWHDFLKGYPALKEIRIPRWVRFHPAAKL
QYHGFCDASQSAYGAAIFVRVETTDGCFITLLSSKTRVAPVKSISIPRLELCGAVLLSELAAAVLSEMPPTHYDTFYWTD
STIVLAWLSKPACTWTTFVANRVARVDQLTNREQWFHVKSEDNPADLASRGVSAQELKDSDLWWRGPEWLVHNQEQRPLK
CNIAIAPPATDILERFSAFERALRVLAYVFRFARRCRKQHVDVKAELSATELSDVQERLIVLTQQSEFATESKALSNKLR
FPVSSSISNLNPFLDSHGVLRASGRLRASEMLSYDEKHPIIIPARCIFAKLLVLFTHRISLHGGNQLVIRLIRSKYWIPK
LRNLVKETIHSCRVCTIHKRKLQTQLMGDLPSARSTFSRPFTHTGIDFAGPFDIKSYVGRGCKVTKGYVCVFVCFSTRAI
HLEATSDLTTEKFLAAFSRFSARRGCPHHIHSDNGKTFVGASTSLSKDFIEATRALILSKYSLQNVTWHFNPPGAPHMGG
LWEAGVKSFKTHFYKQTAVGKYTFEELTTLLAKIEACLNSRPISPMSEDPTDLVALSPGHFLVGGPLLSVTEPEIKETPI
SIINRWQRLKALHQQFCFRWKEEYLKELHKRTKWQSPMRDVQTGDMVVIKEENLPPNEWRLGRIQRVHPGADGLTRVADV
NTTRGVIRRPIAKMIRLPMEATDSK
>BEL-17_Adi#LTR/Pao 46-5689 via tfasty with BEL-1_HM, 1 frameshift. [Acropora digitifera]
MFEDQVEEPAEDSEDRLDTFKEEKCKAKTNFTRARRKLLSLIDDDHPPRRNEVRNGCENLDLVLEAALRIMENLSEEYSR
RGDRYNRKKVGREMEQLESEFTEAQNRAQEYLDKTKSESSTSESVLSEAESARSKEIEFQPRPVSRDVQDPREGKRDLHK
PHPDSRELRDYYKWLHSDLLQEDLSPRQFTPVPTDFPGKASAETPAVTIGRDMWTQLKRVAIPVFSGNKKTYESWKAAFI
ACIDKAPATPEYKLLQLRQYLSGEALKTIENLGHSGYAYEAAKERLERKFGGQRRQNAIRLEELENFKPLRPDNSKDLED
FADLLDIAVINLKEAGRSAELGDGSLYLKLQKKMTESMLTRYHRWVYENFKIESVETLREWVMQESQFYTIAHETVRGLI
KGDWRPAGQRKINTFFAEPSIADRKQRQCPVCSKQHGVWNCDVYRKMTVPSRWETAKQLKLCYRCLNPGHQGSLCRRSRV
CAVNGCRENHHRLLHRVQSVNIRNPEQPSAVVLDTSGRRVETLSNPSVVPANNSAELPGAETSQLTTEGEQRNITERSMT
TVDHNKSEAPAFVALRTVPVILKNGNRRIEVNALLDDASTRTYLNSDVAAQLGLQGEYQRVSVNVLNGRVEAFETMPVEL
EVESVDGHFTRKISALTTDRVTGNLRIIDWRKESNKWKHLQGIAFPKQSTARPIVDILIGIDCLDLHYSYEDVQGFPGDP
IARRTPLGWTCIGNPDGEIGNCLQTNFIHAYFVHGEAKSEEIDLTLRRFWEIEAVHKDEPVLGVEDRTVLNNTQKSLKFV
EGRYQVAIPWKKNTTLPQDNYEMALRRLEGTEHRLLKSPEIARAYTDCIEQYTLKGYIRKVPREDRPAARWFLPHFPIVR
PDRTTTKTRIVFDASARYQGVSLNDVICQGPKLQRDLFHVLLRFRKHPVALVCDIAEMYLRIEIAPEDRPFHRFLWRDLD
QQKAPEEYEFSRVVFGVNSSPFLAQFVTQHHAETHRTEYPLAAETALKSTYMDDSMDSVADDQQGIELHKQLSQLWKRAG
MQARKWLSNSPVVLSEIPPEDRASEIDLKEGSLPSIKTLGILWQAAEDAFTFKVQPPDDYFSFTKRNFLSKVATLFDPLG
FLAPFIIRAKVLLQDLWAAGLDWDDPFGEALVRRSRNWFEELPELAQISVPRCLQPMKDEIAISSSLQTFVDASEDAYGS
VVYYRNVYPSGLISSVIVAAKTSVAPLRAISVPRLELMGAVLGLRLTKEISKALNVSDAVFWSDSVDVLWWLRNASRRFK
PFVANRVAEIQSLTSSNQWRYVSTEDNPADLATRGVTASGLACSEIWWQGPKFLKKAESEWPENLIQASSSSQKEFRSRG
RFSKAETNKGQESTLTAATINESRDWRLNPQRFSSWTRLARVHAWVSRFLDNCCLSKDQRITGELTIDEIRNAENQIIAQ
AQQQAFPDEYRMLAQGKNLPHSSKLLQLRPVLDEDELVRCDGRLRYAECLPYDTRFPIILPRGHWVTTLIVKHYHEKGYH
ASGTNQTLADLSSRFWIIAAREEIRAWEKNCTECRRRKAKPASQVMAPLPRIRVKEPLRAFSKIAVDFAGPFFTVQGRGK
ARQKRYLCLFTCLLSRAVHLELAFGLDTDAFLNAFYRMVNRRGLPQEVVSDNGGNFVGAEKELRELAKNLDEDKIQRSVA
NKGIRWHFNPPLAPHFGGVHEIMIKAAKRAIFAILGSADVNDEELMTAFTGAEALINSRPLTYQSADPSDDVPLTPNHFL
HGQIGGQFAPESVDDNKNLNIKKRWRRIQELVKHFWRRWMREWLPDLNSRKKWLKTQRNLQVGDIVLLISPDAPRGQWPL
ARVIEVYPGEDGRVRVAKVQVGRNTLTRSISKLCPLEICKQ
>BEL-15_DWil#LTR/Pao 528-5048 via tfasty with BEL-612_AA, 5 frameshifts. [Drosophila willistoni]
MRYSRRKFGRTFVCRSTAASNDSELMARAEPPRKLYDLPSFDGTPESWPMFKEAFDMTTVEYGYNNRQNLLRLQKAIVGR
AREVVECLLIHSQNVPDVMETLKDRFGRPEQLVKSQINNVRSFPNISEDELENLVEFATKVRNLSAFLDAANARHHMSNP
TLMDILIGKLPVQQRLSWSNYVMSLNREVTIKDLNEWLQTMAKVVYGACLSTSESTSKIKKERTRMFHADQRHQTSDYME
ARCIMCNGSHWLRKCNGFANLNHDEKWQFVRKKGLCFNCLREGHRSDKCKVQVKCEVPNCNRRHNTLLHMEKEPIVVVKP
SSSKEFSGTATESKGSTLLFKILPVRLHAKGHTVQCFAFLDEGSAVSLMNESLAAALHLKGPKEDLTLQWFGNKQVTEST
SRFDVGISGTNGYTIYDLKGVRTVKNLKLPKQTINRKDLYFKNRHLENIPLQSYSNVEPELLIGLDNVHLGIPRKVKSSV
GRGPAVVKTKLGWVVYGKIDDHPNAILCYNGYNIRLTQESEQNKSLDKAWYLPHFGVVNPHKPGKIRFVFDAAAEVDGVS
LNALLMRGPDQCQPLSYVLMKFRQRSVGICADIEEMFIRKDDRWAQRILWRKDETNEFKAYEMMVMTFGAKCSPASGQFV
KNKNASEYKDLFPQAADAIVRNHYVDDFVHSYGNETEAIRVTEQVIQIHRKGGFELKKFVSNSKVCNDNFGEGSMDDVLS
LDKDGALYSQKVLGMHWYTAEDKFGFILSFNKIDKSLFSDERIPTKREVLRIVMSIFDPFGILIEYLLMAKLLLQSIWRK
KIEWDQSINQEEYIEWKRWLRFVNEIALIRVPRWYGTTFSNECVELHIFGDASEMAYAAVGYWRVEDAEGWKVSFIMGKT
KCAPMKLSTVPRLELQAAVMATRLRNSILEGHDIQPKRVCMWSDSSTVLAWIRSDQRKYKPYVAHRVNEILESSGVEEWN
WVAGKDNPADFGTKIKRDSRQSLWVTGPDFYWMSLEESPQQSKGNFSTDMELRPKFCMVTTKQTDDLFGRFSSYTRLVRS
LAWVLRFRRKEVRENYLICSEIDYAEVVLFRSVQKSSYPDEYSELARGKLIDKGSSLLKLTPEINNDGLLRVGGRIDKAC
AVDMDTRRPIILPQGSHVSKLLITHYHNKWKHQNENSIIAEIRRKFWIPHLRQEVRRTSRTCFICRMERARPAPPLMGQL
PSDRVTPFVRPFSYTGIDYMGPFAVVRGRGTEKRWICIFTCLTVRAIHLELARDLTADTCLKVIHNFMRRRGVPIRIRSD
NGTNLVGAERILRQELYKKVAAGLAIEKIEWLFNCPLNPHAGGCWQRLVRSVRRAMGHVLLQGNLKEDTLYSLMCEAENI
VNSRPLTHIAIDSPTGDPITPNHFLLGTANSTQTPHPQEEDYHPTMKNLRIKQQMTHSFWRKWVNEYLPDLCRRTKWYHS
VHPLALGDIVLICDSAQHRVNWQKGRIIEVTTGRDGQVRSAKVKTSTGEFRRPACMLAKLDFGESKMD
>BEL3_DR#LTR/Pao 39-5980 via tfasty with CATCH1_DR, 1 frameshift. [Danio rerio]
MDSATVVVSDPAARPKRKGKLPSHLGDYEVGYTLPEGPPSITASRCHSQHKSQSRKTSHSKASLHSKSSSFSTTSRAQAT
LALTSSQAAIVEEKIKQRQYDNLLEQMEEDKLAEMEYHRLRTQAKEAQRVQEEALEAKEALANQLERQRKLKKAEADLEV
AKLVNSLLSQDLSVIDAEPQASPDTTAPPPKSLCASPAPSSVLQQSSCSAPPRMQIIQTVPEAQSTLKDPYMAHSTPYFP
PGALQATKLTQAPAHTAQMANQHPPNPISVPRPTFNPMHTTVTHNAMPHTDSDIIPPTAPHQRVTVASNMPICPQPYANS
PVSQTGYLPQPGTELLMAAAYGIPRPTLPVFESGTESDFALLKLALDSLLSPHTHISEQYKYQVLMSHLKFASAQQLAKA
YMHHPQPYTAALQALQAKYGQPRQLVQSELGAIMSTPPLKIGDANSFDSFALSVQSLVGMLRTLEGQNGFELMCGSHVDR
LLGKMPPAYRDSFVEYCFSHGILQSGTDRTYTLPDLAAWLQTKSQAKRISSRAVAMFQSDITKTSGRSKSSSYHWERPTT
SFLTSENAVKPPAATPAKVSPKPKPYCPYCDNPDHYLNSCDKFKKLTTDQIVSWITRDKRCWKCGRNHSVNTCNLKRPCK
ICKEIHLTILHDSIKDTSRAVLMVSLPSTQIYLDRPNRSQKVMLKVARVLLHSQTQTIEAYAVLDDGSERTIVLPQVVRQ
LGLSGVPEVLSLQTIQRNHTDLNGSKVTFEVSPFAKPSERYVIRNAFSAPGLCLAEHNYPVAALQKSYHHLKGLPLQPVD
RVKPLLLIGSDLPHLLTPTQPVRRGPDGGPVAIHTKLGWVLQGPMSPIQPPKGLQQCLHIMTAPSREELSQHVERLWQID
TLPYNEKLITRSQQDNQCHNLLQTTTVRVDVNGIQRYATPLLRRTPITLLHTGIEAVLPSLRNLERKLAKNPEQAQVYCS
EIQKLESAGYIAKITPQEANHSTESWFIPHHLVHHNGKDRIVFNCSFQYNGQSLNEQLLPGPTLGPSLLGVILRFRQHAV
AVSGDIKGMFHQVRLLPGDRPVLRFIWRNMNREAVPDIYEWQVLPFGTTCSPCCAIYALQCHSQENRESRPDLADIVETS
FYVDNCLHSTPNQDEAKAIIDGLRESLLKGGFEIRQWACNVPSVLKHLPSEAISASSECWLSQSSSYLQELTLGLQWNCI
DDTLGYKTRIAEPIQPTMRNLYKTLASQFDPLGFIIPFTTRAKTLIQDLWKQNLSWDDPIEPLYLRDKWSTWVAELSHIT
TVQFARPYAPAMSDTPSTIRELHVFCDASERAYGSVAYLQIRNEEKVHVSFVLARSRVAPRKCLSMPRLELCAAHSGAQM
SKVIQAELTIPIHQVTHWTDSTTVLHWLKSESCRYKVFVGSRVAEIQTLTDVSKWRYVDSNRNPADHITRGLTLEEIAGP
HQWRYGPSFLTQPQEVWPVTPSTKSEPDMNEVKRASFIAAIRVTPSPVPADLSQFRTWKELLQATVTSCDGAADAETTND
ASKYIQAEKLLLAHAQLDSFPEEFRALKAGQPIPTDSRLSSLAPEFDKDAELIRVGGRLRRAETLSFDTIHPIVLDSHHQ
VTKLLIQDIDQQLHHPGAERVLAELRRRYWVLRGREAVRKHQHFCQNCQFWRAKPQNPQMADLPPCRLRLFKPPFYSTGI
DCFGPFHIKIGRRREKRWGILFKCLTTRCLHLDLLEHLDTDAFLLSLRRFISRRGKPAEILCDNGTNFVGGDHELRDSFK
QMAPKLQTQLAQQQIQFRFNPPNAPHFGGTWEREVKSVKAALQVILREQCVPESVLQTLLVEVEGILNSKPLGYVSSDIA
DPDPVTPNMLLMGRHDASLPQVLYDSNEMLGKRRWRHSQVLADQFWAAFVHRYLPELQGRQKWRTDGKGLVVGQVVLLID
NQLPRALWPVGTVTETYAGADGRIRTAKVQVKDKSYLRPVVKLIQIPEMKDKDTETKGGLS
>BEL1_DV#LTR/Pao 290-5575 [Drosophila virilis]
MFDEGASANGNDEATSASQVAVGTQAAVFKIKIKNLTDRLNRLSSELDPARLRDVDDYELQDYISMASDLQAKFEIVCDG
LLEVDHASVDEDLQTSFESTIRQLRLSLQRERGNRSKVQQIPHCSTFNSAAADDSRSTFVVPNHSRLPQLKLPEFSGGYT
EWADFSNLFTTVIDKDPYLTNIEKLQHLRSCLKGTALDTIRSLEISNANYAAALELLDKRFNNKRLIFQAHISEILGLRK
VDKGATAQLREFSDKLNSHLRALKSMGSVEQIAGCVIVHTLLQKLDSVTQASWEDDAPLDVIPSCERFTTFIERRCQRLE
NADHATAMYTPSSQVGQNNSSRRTFVVTRNGTSACVFCEVAGHSIYKCLQFANLSPLLRLHEAKRLALCLNCLQRGHQLR
VCGSSACRVCGSKHHSLLHLGNTSSHIAASSPNNAQDTETYSSSQNTLAALLSSPLTTAQHLKHDVVLLATAVINVKNRA
GSLVPCRALLDSGSQLHIITSRLAHQLQLRKFKSTAIVSGIGDAAFASDGFSVNINVKSRVSEYSTCIPALIAPSITDNQ
PGFTLDPASWNIPSNIQLADPEFFKSQQIDMLIGASLFFDLLCVGQIKLAAGLPILQKTRLGWVATGGASHAGKSSFMAM
RSMENPDLLVDSHLQPNTQIDELIRRFWELECCTDPESLPNKEERDCEAHFQANFKRLSTGDYSVRLPLRLGMYPLGDSY
QQAVRRFLNLERKLDRNPLLKPQYAAFIKEYLDLGHMSLVTSAALGQCKYYLPHHCVLKEDSTTTKLRVVFDGSAVTTSG
HSLNDALMAGPTIQPKLFSILMRFRTFAVALTGDICKMYRCVRVEPADSYFQCILWRESQHQKIQIYKLDTVTYGTKPAS
FLSVRAMHQLAMDEQKTFPIGSDIVKRDFYVDDLISGGSCVQEAIEILKQTSGLLAKGNFRLRKWCSSDTSVLQNIPEED
RETLLKFDDGSDITKTLGLVWDPASDCFLFSFSPLRLPSRLTKRSILSAIARFYDPLGLVGPVITKSKIFMQDLWREKLD
WDESLPVHLSTAWVNFCADFEYTQQFQYPRRALSSDSTVEIHGFCDASLSAYGACVYTVSKCNGNTSVRLLCSKSRVAPV
KTITVPKLELCGAALLAQLLSEICQMKVFDCRYYCWSDSAVTLAWIRNDASKFNVFVANRVAAIQELTTGMEWHHIPTEL
NPADIISRGALPSELFRSPLWAHGPSFLSKGKEEWPASCVPVESLPELRHKVLLGTAAQPDLSIGCKFINSFSKLQRVFA
YVYKFVNRIRGAELTVDHLHHGTHWLLRSVQMATLSDDYKALKEGRHVKPSSSMASLAPFLDDFGLLRIGGRLKNSSLDF
SARHPIILPRQHPVTRAIIVYFHKRNLHAGPRALLSSIRLQYWPIGGRKTVSSIVAKCIICFRAKPRLAEHIMADLPADR
LNTSYPFMVTGVDYCGPFYYKNEVRNRPPVKCYISLFICFATKAVHLELVKDLSTTSFLNALKRFILTRSRPSRIWSDNA
TNFVGAKNELADLNRLFLRDEHVKAVNEFCLTESIEWLFIPPRSPHFGGLWEAAVKTAKHHFYRSVCSSILDFDSLRTLV
CHITAIINSRPLLPLSEHPGDLDVLTPAHFLGTAPSSSYIEPDLRQLNFNRLNYFQRVTYLQQVFWARWREEYLTLLQQR
SKWRTPQPGLSINDVVLVKDENLPPLKWPLARVQELISGSDGVSRVAVLQTATGVIRRAVRKLCLLPKQDDVESPCLPTG
G
>BEL4_AG#LTR/Pao 95-5380 [Anopheles genus]
MPVDHSPVKEVVPAANNMEESQSSTVREFGSVPDVTKLDRQRTHLEWQLDRLEQMFVKHSTDVHSLKTIADRVKVLALDY
KQWYDSILDVVSDDQAQEAIERYGVFDDKVFELSKNIEYQLASQIPLPTTPNPFFGSEQKPTTVPVRARLPEIVLPHFDG
NIRDWPAFRDAFQSLIHSSEQLTECDKLHYLAASLTKDARAVIDALEITSKNYDVAWKLLSERYENKYLIVKTTVEALFN
ISPLKRECADSLSRLVDDFERNLRMLEKEGEKPDAWSTLLVFRLSSLLDPTTLRHWELHRKSTTIPTYKDLVQFVRNHCH
VLKSFSKPASGARTGDTMRSNPRVQTIHAATSAVHSVAYNEKCKLCGVSKHSVFRCELMNNMSVADRKQLVQSKGLCFNC
LSPAHRLRQCTSSGCKICQQRHHTLLHEAAPATEASDAPSTSSTCPPQSLTHCSIQIENSVVLLQTVLVQVEDNHGRCHL
ARALLDSGAQLNIVTERLTQRLGVAKRRENHRIGGIGEVSVTSQHSAVLKIHSLDSEYTASGKFHVLSKLTRELPSSRIN
TSSWQIPRQVQLADPSFHSPGPIDLIIGAELYYDVVKEGLIKLSHERVTLQNTAFGWVIAGRVNVHAPPPPSSIVGHVCS
TSIEEQLSKFWELESCRATSTLSVEESNCEKQFATTTTRDTDGRFIVQLPKREEKLALLGDSKGIATRRFLALERRLSSN
ASLKTAYTQFIEEYAELQHMTEVAESDATTSSPSYYLPHHCIVRPDSTTTKLRVVFDASCASDTGTSLNDALMIGPTIQD
DLMSILLRFRMSKFALVADIEKMYRQINIAAIDRPLQRILWRNSPTEPIRTFQLNTVTYGTSCAPYLATKTLQVLSQVGA
STHPEAATILGRDFYMDDMLTGVNSIPEGQRVCQQLIDLLASGGFCLRKWATNNRQIFEHLPQHLQDERTILNLDAKSPI
IKTLGLKWNVSTDAFVFNIPRWNADNIITKRNALSDVAKLFDPIGLVGPVIIQAKLFLQELWRCQIAWDEPLTPALQNRW
LLFREKLAMLQTIHIPRWLLTDQRATNLQMHCFCDASEKAYGAAIYLRSTNTDGRVTTNLITAKSKVAPLADSRKQKRVC
LPRLELSAALLLAHSYEKVSDALKLQVETIFWSDSTIVLHWLSATPSRWKTFIANRVSEIQHITHGKEWRHVPGTDNPAD
IISRGMDADQLETSTLWWHGPDWLAQPSEEWPNTHQPRQEEFTTDELEERPICMAVQSVAPNELFSLRSTFTGLQRLVAW
LRRFRHNTNPANHQQRRLDHHLSLEELAESTLCLVRLAQAESFPEDIKHLSKGDSVGNNSPLKLLAPFLQDGLLRVGGRL
RHAPIPFDRKHPYILPANHPLTNQIATLYHRTYQHANPQLLIASMRERFWPLRAKNLARRIVHSCYKCYRCRPTPAQQLM
GDLPAERVTPTSTFLHTGVDLCGPIHYRHTSRKAQLIKGYVAIFVCMAVKAVHIELVADLSTNAFLAALRRFIGRRGKPA
IIECDNARNFLGASREIASLSKQFNHQWQTSVIKSCIDDGIQFKFIPPRSPNFGGLWEAAVKSFKTHFKPTVGNAILTSD
ELNTLLIQIEGCLNSRPLTPLSNDPSDLEVLTPGHFLIHRPIVSLAEPSLEKLPFNRLDRWQKVQEFVRRLWKRWSTDYL
SGLQQRTKWTKQKDNVKLDTMVLLKEDGLPPSKWCLGRVTQIIKGADDNIRVVIVKTKDGDFKRSISKICVLPTDEPSSS
S
>BEL5_DR#LTR/Pao 421-6519 [Danio rerio]
MSQTGGTPCSVEEMGKKRESKLTQKALLNKIERLQCERKRAVDKIKGLIPKMKEYMKQKGNILQIKQCLMTLNTMCESAV
NAHDELMPLLPEDEFLKQKEWFLSIMNYSSVFQNQTEQWISETEQTQGVSQNATEMNENVISAKSNEVENEDEINPRDSV
SNISCNKSSLSKHSSTSSARLKAQAELAALAMKKKLLEERHALEEEEEKLRKRKERLQLDAEIAGEQAKLEVLKTHSTTT
SVILTSNVSDGMNSYVAKQSKQPFNVDAGEFIPSDSNKERYLGAKPKVKLTPVLDNITPSNIIDPPFSQNHLNSFDMQDS
QGPHDFNTDIFMDSETKNCVLGLMKKQNEVTTLLMQQQGLSALPKREIPIFDGDPLKYHSFIRAFENGIEKNINDNCDRL
YFLEQYTRGHAKALVGSCHYMNPDRGYLKAKTLLKEQFGDEQKVASAYMDKALLWSPIKTEDVKALQDFSFFLRGCCNAM
EDVQYLHDLDMPSNMLCIIKKLPYKLRDRWRSQVCELQESNNQRVKFKDIADFIEKQVKILTDPVFGNIQDTTSVSGNKG
MNKLKSQYRSGNKGISFATSVGAVESKCQSEKKRKEIITTDKKVCMCCGGGHTLDMCVQLGKMVHEKKIGFLRENGICFG
CLCTGGHISKNCRKRISCSKCNLKHPTVLHREPAHVIEQTERNTVVPVDNMLVSSGLTGAGDEDCKLPIVPVQVKSNKGS
KIINTYAFLDQGSTAVFCTENLMHKLHLTGRKGRILLRTMGQEKVVSSNIISGLEVAALEGDSFLELPKVYTQESMPVHR
GNIPTNRDIKRWSYLKHIHLPQIDSEIELLIGTNVPKALEPLQVVCSVNDGPYAIRTMLGWTVNGPLMGDSGERVNWKQP
LVMVNRVSAVNLDEIWHQQFKTDFPENRLDDYAGMSREDQKFLELVSNSVKHVNGHYQIALPLRSIDVSMPKNKNIVEQR
LHHLKRRFQKDSLFHAEYNNFMNDLLLKDYAEKVPVEELDRSDGKVWYIPHHGVFHPTKGKMRVVFDCAASYQGTSLNAQ
LLQGPDLTSSLIGVMTRFRKEPVVIMADVESMFYQVRVSSDYSDLLRFLWWPNGDVEQQPVEYRMKVHLFGAASSPSCAN
YALRRCAEDYGCHYSENAVDKLLNSFYVDDCLVSVVTEKEAVSLYQELVSLCARGGFSLTKWITNRPGVLEAIPESHRAR
GMEGLNMELDSLPVERVLGLEWCIKSDCFKFKIVLKDRPLTRRGILSTISSIYDPLGMLSPVILTAKKVLRDLCRREIGW
DDTVPESVSKDWMKWLQQLHLLDVFKVDRCVKPSCFGDVVTAQLHHFSDASQDGYGTVSYLLLKNQHSVMHSAFIMGKAR
VAPLKSVTIPRMELIAATMASRMDILWRKEMHMDLLDSVFWTDSTSVLKYIRNETSRFKVFVSNRVSQILKVSSPEQWRY
VDTASNPADMASRGVKVDVFIQNTTWVSGPHFLLHPESEWPINKEDFNYLSPEDPEVKNVAATNVTQLKEDPVTYLIKYF
SSWTRLKKSVAWFLRIKDWLMSCLKETRHFHQTVVQSDNNAQQSSSVAEEIDYFKRTSSKLTVEDLDRAELAIIKFCQGQ
RFPEELASLEKGQHIKISSHLHKLCPQLQDGILRVGGRLCRLAMPVEVKHPIILTKDLHISELLLRHIHQEVGHGGRNHM
LSKLREKYWITGVSVAIRKVLSKCIVCRRLNALPVYQQMADLPHERIVPDEPPFTRVGVDYFGPFEVKSRRSMVKRYGVI
FTCLAIRAVHLEVAPSLDTDSFINALRRFISRRGQVREIRSDNGTNFVGAERELKAAIKQWNQGQINDLLLQKGIRWSFN
PPAGSHHGGSWERLIRSVRKVLNSMFKVQNLDEEGLHTVLCEIEAIINSRPITKASMDPNDLEALTPNHLLQLKTSPSLP
SGLFQPTDMYALRRWKQVQYMSDLFWKRWVKEYLPQLQERQRWIGVKRNLVVGDLVIIMDSTAPRNSWPTGRVIQTFPDR
KGFVRQVRIKTKTSCLERPITKVCLLQEAEFD
>BEL4_DR#LTR/Pao 104-6280 [Danio rerio]
MAEEALGKSVKQLKKERTTAKSSFTKQANFLCREAHRLIESELKEEFKKLSSGARKVFETNDDYKAGLIAEIEATEDGAE
VQLSAQQEADFKKAVEECNAKFDEVTEIVQDNLWQRYGQSDVLTTISAAEKACDRTAAMPVDGTGYESYEVQLELSMRLV
KEATVTLLKWERWIPAPERKDLESHVRKLKECSNELESRKAEFAWARRAAEDTQALDTSMTNNPNIMVPAGQIIPVVKIK
PTSLPKFTGNKRDYYRWKRDWENLQKQGEPTGSVEVKKIQLVDSVDDRIAKELRLSSYNTADDIFRVLDNRYGNKITIAM
EIVEELEKMPALRGNQPRRVIELIQMVEKALADLTDLGNVGAMKNPLVIKSIESKLPELLKREWLVYMTDPANNITPDKH
FDELLQFLQKQEEVLERLEQLRISERVEKPERKFEKNYAFTRTTKKDSTEAGCIVCGAEKHRDRIFFCRKFKDLKLTEKK
SIIRKLGACKKCLGVHEDDSRCSDNYLCRNKDCKKGDFSDHHYFLCPKWDLKNLNEGKTISKDSRKGSGLTAEQEHFLAE
LSPELAEKCKKAFTNKVKMINCLGNDQQGLVSKSGLKELPVIMMLMEVTTNAGQKIGALIDLASDTNYITHEAAERLKLR
GEKITLVVHGVGKMAIRVSTNRYLLRIRVKTPEGTVKAHQLICYGLEEIAKVHRIVSQEKLREFFPEVELEELKRPGKID
LLISHREGRLAPQRVKIVGDLVLWDSPLGKTVAGAHPDLFEVVDMAAYETKTHFARSMRTAAARYEEIIEKAERPAITDI
VKEGKSPRSSLASNREFIDWWKWDSIGTACEPKCGGCRCGNCQPGGKEMTLAEERELEIIREGLTYVEMDTHSTAPHWDT
KYPWIQDPATLPYNRSGVEAAFLRTEKQLKKVPEWQDIYAAQVHDMVKRGAATKLTKQVIEEWKGPVWYVSHLVAPNPHS
TTTPVRLVWNSSQKFKGLSMNDLLLKGPDVLNPIRAVLLRFRKGVFAALGDIKKMYNSVWLEEREVHLHRFLWRDTQDEE
ISEYAITRVNIGDRPAGCIAQLAMRETARLAKFAHLKEECRVLEEDSYVDDILTSHNSQERLKEITNGLEEILAAGGFAL
KPWVRSEQSGRNEVVDPSQVPKESISQSKTIILPNQLRDEDNKALGTGYLVEEDKLYIMASINFSVRKKKMRTGQNLLKS
EVRLRTPNPLTRRHLLSQVAGLYDPVGLVTPAKQKGAILVRKAFQETGKGSLTRETWDMPLSENLREEAIRLFEEYVQLN
QVKFHRSLTPPGWKGKPWGITFSDGSDKTYGAVLYLRWNTDQGIDVRLVESKAKLTPLDQKGDAVKAEICGAVFAARLRK
YFEKHGRMEVERWFHLVDSQTVLGAIQRDSYGYQTFFANRVGEIQKSGSVSDWWWIPGDINIADIITRGGTPEDLAEESE
WQEGPQFLRYSVEEWPKKSAAEVAADAKENVNKLQRKTFSAVLTRSQTKRDLAEAGKGIPEVSILGDSINVVSDSGENGK
RPNLPKGTPRDLIIKKLVDEEKYSNLTKLVRVIGWVWRAVKKWLGFRDQDSNERKRKEVLQNKIKQTMLTVKEEEYVLKE
LFLAAQQGVTFPDTTLSRLAVYRENSGLLVCGGRIQIFNEEKIAVPILPFSAWVSMLLAREAHSANHEEVAGTLLRMRKK
AWVIKGRRLAKKVVDSCVICRKARAKRCEQIMADLPPERTEPAAPFEYTTLDLFGPYIVKDEVRKRVHLKVWGIVYCCMA
SRAIHTDIVSDQSAEGFMLAYQRFTALRGHPRKLWSDPGSNFIGVKPALTELYKFLDKLETSELEEKAAKHGTEWVWKIH
PASSPHRNGAAEAAVRIVKRALHNLGGDGVFTWSEFQTFLYMAANLANERPIDARTQSREDCVEYVTPNSLLLGRSGPKG
DPGDFDFVGYPYKRLKVIQGEVNKFWRKWSQLAGPNLFVRNKWHTKERNVAVGDVVWLADQNALRSQYKLARVIQVNADD
KGIVRDVNVKVFTSYPVSNVKPAKAKVTTKKLTDRIPATILHRDVRRLVVLIPIEEQH
>BEL1_Cis#LTR/Pao 55-5871 [Ciona savignyi]
MDNQPEHRVEQWLDNIEEAKQPGIEEAKQIPAPPNSTTPLDEKHESVSVVSTTSSMRSFKLKDSKVKLELARLARQQDLE
RKEESKLLAETEEHKRKLLAEAAERERKLQEELADRESRRKLELAEAEARAWEEASXPEARHNEVQTRQYAGSTTPLLEQ
TTSTEQSRNEITPTAAQPPQRSTLYAPPVVRPKDSALSHLPLTERHLPPFPSDIRVNDEREHVTTQHQNRPSRYADRSPM
RNQQRRTQLSPTRIRRDSPLRHVNHQEVGERFLPKPIVQKFNGDPMDYWSFVNRYQLHIADKVDSYDLKLVYLLQHCTEP
VCEKIKHNSVDNYENDGYETAMQELFERYGQPHIIARRCESLLQEFPRVPADDPEALEKLAVLLRNCCASLEKTRVKSTV
DSVGFISTLVNKLPLELRKKWISKSLSIQDKTGAVAVFKDFANFVREQSREANSVYGKCLLLKSTNPVVTTARKPKVSAY
NVNVTAEFPTAAAPTPKPSGLQCPVCKKPHLIGACRDFKDKSYEQRKRVTRECGLCFKCLKAGHSVRECPHKIKCSVEGC
TGNFHHTLLHDPRWIIRPADRIESNTTVKACMHSLSAKKNTVVPTSAYLDIVPVRVRSGGKETRVYALLDSGANRTFCDR
RLADQLQATPTGRAANFDLCTMTTSEPINVKTTSVSLTVLPLAGGEELNLPDVALIKEIPATPSKIPERNKLNRYKYLRG
VDLPQIPDGEVMLLIGNDNAMAHRCLESRFAPNPRETPDAIRTPLGWLLKGPSLDSLPNEEGAAGFLLQATAGSGSDEAI
KDLLINDVGDVFPSSDTAATDDVETLMCWLRSHKEASEFGMKYSKEDVMAYDIMTRRIERVEGHYQLPLPWKDDSTVLPD
SLPMARSRLSSLKKRLARDVDFSVKYTKYMTMMLDNGYAEVVPEDEVNTTNKLWYLPHHPVINPKKPSKVRIVYDCAAKC
EGQSINDKLMKGPDLVNPLVGVLMRFRRERVAIVSDIEAMFHQVLVAQKDRDALRFLWWPGGDLTKSPVPHRMKVHLFGA
RSSPCCATFCLRETAREFGKFFHPRVAEVVKNNFYVDDCLVTAVDDQAGIQLVKDLRNLLSMGGFKLTKWLSTSVAVMES
VPADDRAKVIQDIPLGGEVHERVLGINWCVQDDEFRFDITIPTKPLTRRGMLSVTNSLFDPLGFVAPVVLEARLIYRDLC
LMKTDWDEEVTGTELERWKAWCNSLNELTRIRIPRCFKPQVRHPTPGVQLHVFADASTAARGCVCYLRTTFEDDNTTCSF
VMGKSLLCDSGKHTIPRLELEAALDAVKLSRTVKRELGLDDCPCIYWTDSTIVLQSLFSDCKNFPVFSRNRLSQIEAYTS
VHDWRHVPTKLNPADQASRGTTAGTMMKTGTWHSGPKFLHRPAKDWPTTFLRPQPTEQIYRSFDLPKPESVFLTATSCSP
TDKFIRYFSSLHRLKISTSWILRFCAYLKNKVKKDTAKIPTSPIDAEELRSAESALVRYVQRREFPDWMRMQSTRRPPST
SPIYKLNPILNDGILRVGGRLDNARLDYKARHPAIIPDNCHLTDLLIDHCHSVDAAHSGMNHTLNILFQRYWVQNARVAT
RRILSRCLLCQRRAARPERQIMADLPPSRLQIDEPPFTHTGVDFFGPLLTKLRRSEVKRYGCLFTCMTTRAIHLEVATDL
STDAFINALRRFTARRGPVTHLYSDNGTNFVGCERILRECIEEWNRNQVGDYLRQKNIIWKFNPPAASHFGGAWERLIRS
VKFILQALLQGKPLDDDLLHTLLVEVEDIVNSRPLTQVPLEIGEDLPLTPNHLLKINPTITPPPTVTRSTDCYARRRYRV
VQYLADEFWKRWIQEYPRSIISRQKWHEQKDNVAEGDVVLLVDNSAPRGQWPLGRVNSLFHDKHGIVRSVEVKTAAGLMK
RPIAKLCVIVSERERSAP
>DIRS-25_NV_gag#LTR/Ngaro 564-1241 (probably fragment) [Nematostella vectensis]
CILRRSASHLLYPGFSPVPAKLLSSIVGGRFVELSELLTSNLREANLEPQLFMNGNLVLTTANKRPRRVIEDIGAWCEAF
SIYALILCSQFPQRNRDLLLYKLGILRTYRQFAGRVWLNYDRAFREHAAAAKLTDWSQLHPQIFNVCAAGALARPEAGRG
RPTSSEACRSWNFARCYFPGCRYTHQCAYCDGNHPARECPSSAGRKRKASSPEPLPGKESRTRWA
>DIRS-24_NV_pol#LTR/Ngaro 686-2287 [Nematostella vectensis]
LFVAALLASVPSVTPLKPDRFAAQLIKHPDQHLVAYVLDGIRHGFRVGFDGSSALQSSKKNKQSAQEHPSVVDDYLANEV
SLGRVAGPFAYPPFPNLHISKFGVIPKSGQPGKWRLIVDLSSPEGASVNDGIDPEQFTLNYIRVDKFGPGALIAKFDVMS
AYRNVPVHPSDRYLLGMRWRAHYYVDLALPFGLRSAPYIFNTVASMVEWILVNNHQVSDIMHYLDDFILAGPPDSPRCAR
DLSVALQVCTNLGLPLHPGKCDGPSSTLTVLGIELDSVNRVARLPADKLANLRALINKWSRLDWCTRHDLESLIGHLHHA
AKVVWPGRAFIRRLIDQLRCFRHDRHPIRINNETRRDLAWWQQFLESWNGVSFWLYPGLEATPTVIVTSDAAGAFGYGAY
CGSEWFNGLWFASQTSQSIAYKELFPIIIAAHVWGHGWGRGHVLFRSDNEAVVHIVNSRTSKVPCIMKLLRRLLMWAARC
GFSFAAAHVPGIENSLADALSRFNWQEFLRLAPWARPSPTPIPAWLLADISHP
>DIRS-28_NV_pol#LTR/Ngaro 9-1828 via tfasty with LvNgaro1_pol, 1 frameshift and 1 stopcodon. [Nematostella vectensis]
APKTALPVNTASPHTAHREFIVTTCASTSTESPAVPVKPASTPTFAKNAPTPIPLTSVAPESPHPQASAKATEAKLRVAQ
LHSKRKATISTPIKIDLLEQELSSHPDREFVTSLLNSLRFGARIGFDGTQKSRVSPNLISAREHPEIISKNIEKEVNLGR
MAGSYCHPVGVVPKKHSADxSTIYHSSFAKGDSINDGIPKDSYSLQYVRVDDAISILTSLGKGAFMAKTDLKSAFRLIPI
HPNDCNLLGGAVESRYYVDLYLPFGLRSTPFLSNQLSEALVWVLKHNYNVRNVIHILDDFFVAESSKLGCLESFTRLLKF
FISVGAPVVASKTIGPSTTLEFMGIELDTLRMEARLPSDKLERLKASLRDFKRKRSARLIELQSLIGTLQFACRVVVPGR
TFLQRIIDLTRRVNHRFHHVKLSHGFFQDLAIWQQFTENWNGKAFFLEEAIRTSPDMELYSDASGSIGFGGYFSGRWFQG
RWPPHLAISKKTGISIEWQELFPIVVACSLWRSEFSGKRIQFWCDNQSVVHIVNTGHSKAPRIMSLMRHLVGISMAHNFV
VRCRFVPGHFNGISDALSRFQMARFRELAPAADQTPCVIPPSLMTL
>DrNGARO1_pol#LTR/Ngaro [Danio rerio]
SVLFPPPHSALFASALSVLPPENFLTKKRLIIDLSSPHNSTFSSINSLIESDQFLLNYHDIDQAICLIKSVGRNAWLAKV
DISSAFKIMPLHPDFWHLFGINWRSKFYFAVRLTFRCKSSPKIFDMLSEAICWILTNNYGVSHLIHLLDDFLIISLPSEP
PARQLAITQKVFANLGIPLAEEKTAGPSTSLEFLGIKLDSKNFQASLPKEKIDRIIFLSSIFLEKQICTKRELLSILGHL
NFAMRIIPQGRPFVSHLLQTAASINGLEETIPLSEACRRELSLWISFLKCWNGCSFFYSDLVLAPIDIHLFTDAAPSVGF
GGYYQGRWFASPWPSQMLEIPLPSQSSALFELYPLVAATIIWGDEWSASSILIHSDNEAAVQCVNKGRSHFPILMPFIHR
LVWTSAKKQFIITAKHVPGFKNQIADSLSRFSFQRFRQLAPEADPHPTPIPPYSEMILP
>DIRS-42_NV_yr#LTR/Ngaro 1395-2033 [Nematostella vectensis]
ETGLSLLAGKHTRLPITLPILNRLVGSASLICSDDYQAAMFQAMCLLAFYAFLVGEFTLSSKYNRENVLQLSQLTKLVNK
GEVVALKVTFVHFNHVALNRQYSIEVGKQSDGLFPVKVLLAYLDRRGRTPGPLFIDKHGSPVPRSNFSQLLEAALKVNRL
DPKRFKGHSFRIGAASFAADKGMSDAQIRLLGRWKSDAFKKYIRVPCLSQTM
>BEL13_AG#LTR/Pao 429-5717 [Anopheles genus]
MSVRRSDVHKTPAESEEWKIAPIDMEEAGPSSEIPAGLDEAKEVHRPIDKNQCIRKHFLNKLQRIEEALSGTSLGDTTFL
KGCANRLTSLASEYEKWHQTVLETADMENFEDGEEEYARFEKRHFNLLLRIERGMSITTNVSQSRVKLPELRLPTFDGSL
EAWLPFRDSFSSLIDANASLSDVDKLRYLKGALTKEANKLIADIEITSANYIVAWELLKARYENKKLAVKRHIDALFLIP
VMKKDSYESLIHILDSFERSVNITKQLGVATEGWSVLLAHMLHSRLDSATQMHWEAHHRSTDVPEYYELLTFLKSHALVL
QAMLSPGQKKEQYTSSWKQRSKSEVHVVNSSMEICSFCKKGSHSPFKCDMFSGWTVQERYDKVKEKKLCINCLLPGHIMK
NCTSSVCRVCNKKHHTMLHKPVQTSNSAEASPNDREIVTQPDPPADQNVVTYCGNALLTNSIETPSTILLPTALVKIELP
DGSLHWARALLDGGSQINLVTERLCQRLQVIKKRENHPIGGVGQSKHVSSHSTQLTIKSHCTSFKANWKFHVMRYITWNL
PAEKVNKTRYCIPNTCTLADPKFYEPSSIDLLIGRESYDELMLEGILKLVPEKVMLQNTELGWIVSGRVELERRPTSSIV
NLVCTNQDLENQLTKFWEIESCNTNSTMSIEETSCEKVFSETTTRDDQGRFIVTLPTKKDIVPQLGNSFEIAKRRLNSLN
RRLASNKDLKAAYIAFLEEYVQLGHMEEITEQHTNIDTPIYYLPHHCILRPDSLTTKLRVVFDASCATDSGLSLNDALMV
GPVVQDDLVAIMIRFRLPKFAIVADIEKMYRQVWIKKEDRSLQRILWQNCPENKLRIYELKTITYGTASAPYLATKCLQM
LSVHGTSTHPEASRVLANEFYMDDLLTGVETQTEGEELCHQLTDLLSSAGFTLRKWASNSSQILQSIPVDQRDTSGLCSL
DINSSIKTLGLKWIPATDELGFCVPIWTEDEQITKRIALSDASRLYDPLGLIGPTIMIAKCFMQNLWALQKAWDEPLEKE
LHKQWNQFRQQLSIVKDMRIPRRVVGSTHRIEIHGFSDASMKAYGACLYMKSVSEDGKVSVNLLCSKSRVAPLANSKRQK
NVTLPRLELSAALLLCHLWQKVKDSLKHEYSCFYWVDSTIVLHWINSSPSRWKPFVANRVSEIQHLTEPRHWNHVPGDQN
PADIISRGMMPSQLQESCLWWHGPEWLSQPSNTWKLHHPILDCPPSEFEERKTVLIINKQSNIHHPIFSLKSTFSGLVRL
MAYMQRFSYNCKPVNRNNRRQGYLQTFELHAARENLVRIAQNESFADDIRSLETAGEVKTSSSLRSLTPMLVNGVLRIGG
RLRNAPVAYDRKHPMILPYKHPLTRLVMDFYHLKTLHAGQQLLIASVREKYWPLRVRNLARQVVHECIQCFRCKPSTMEQ
IMGDLPAERVTPTFPFLNTGVDFCGPLFYRSASRKSAPVKCYVAVFVCLATKAIHLELVADLSSDAFISTLKRFVARRGK
PSLLQCDNAKNFRGAERKLKVFHQQLQQQQFQQSISSYCGPEGIEFRFIPPRSPHFGGIWEAAVKSFKHHFRATIGTSIL
RRDDLETIIAQVESCLNSRPLTPISTEPEDLEVLTPGHFLIHRPLVAVPEPSYEEVPSNRLDRYQQNQEFVRRIWNRWST
DYLSGLQPRTKWTKQRDNIHIGTLVLMKEDNLPPLKWSYGRVTQIYRGDDGNIRVVTVKTKDGEYKRAITKICVLPIHSN
TE
>BEL-1_XT#LTR/Pao 331-6905 via tfasty with BEL-5_XT, 1 frameshift. [Xenopus (silurana) tropicalis]
MSQQGSVHSFAGESEQVPHEPELTDIQGENPIHTAEQSVRSKRIIKPSQKSRENYEATRDELSSSLSDLWNRTVRCMSVL
SYSNNDAADLRDCINRLSSTYERYQRLSAKYTSFLKDTNIVESLAELSKTEALDQERDLLVLSAKEKAELRIAHLQETRS
HRSTSSKLTSRSSKTSHSRKSALSDKLIEARANAEAAKVQVSFAEKRGKSEMQAEAARQQSEAAAEAARKQAEAARQQSE
AAAEAAHKQAEAARQQSEAAAEAARKEAEAARKQAEAATEAARQQAEAARKKAEMEAELEILQMEKEKASAIARLKVLEQ
ALGGVHDQDCLIPAESEDPVERTSKYVLNQDASNAKEPSLQRPGTTPATHSTGQSLIPVTSNTAVPYSAQPAELQMPAQQ
RVSHTDIVAQHKILPSTITQVDCSSKLQPAKALETKPLLNAHATSFYPGSSHLYTPESLYNPRVPQVTQAPKSERSDLSD
FARYMIRRELINISLSRFDDCPESYRAWRSTFKAAIADLNLTAKEELDLLIKWLGPESADRVKRLRAVHVDYPDAGLAAA
WGRLEQTYGSSEAIENALFKRLQNFPKITNKDNRKLQELSDLLMELELAKADPRLSGLSYLDTAHGVNPVVLKLPYGLQE
KWATTGSRYKKQYNVSFPPFSYFCKFISDYAWTRNDPSFSFSEPNPPASSFSKHDNAAAKHKELRRTVSVRKTEVPPTTD
KSSSFGKTEDPNRQCPIHKKPHPLKKCRGFRAKSLQERKEILQKCGVCYKCCASSDHFAKDCKTVIKCAECNSDKHVAAM
HPTPPPDNLQPPTPASTHGGEEQGHVPASPKISTSCTEVCGEGCSAKCCAKVCLVQVYPEGQPEKAIRIYAILDDQSNRS
LARPQFFEIFNIKGDASPYTLNTCAGRIETLGRRANGYVVSSIKGNIHLPLPTLIECDEIPNNREEIPTPEAAYYQPHLR
HLANQIPAMDKDAEILLLLGRDILRVHKVRQQCNGPHDAPYAQRLDLGWVIVGDVCLDKMHRPSEVDSYKTHVLRSGRTT
HFRPCPHHFEVKENTKDMIPATSVTPTSCDDSFGITVFHTTNDDNKIAPSIEDKEFIRIMDNEFFKDNSNSWVAPLPFRT
TRTKLPNNREQAISRFASLQRTLKSKPEMKDHFVAFMKKIFENDHAEPAPPLQEHDECWYLPSFGVYHPRKPKQIRVVFD
SSAKYQGMSLNDVLLTGPNLTNNLVGVLMRFRREPVAITADIQQMFHCFIVREDHRNFLRFLWHHDNDINSEVIEYRMKV
HVFGNSPSPAVATYGLRRTAREGENEYGADAQHFVERDFYVDDGLKSLPTDEEAIDLLKRTQSMLSEANLRLHKIASNST
AVMKAFQTDDHATEFKDLNLGVDNPPIQRSLGLRWDLLNDTFGFQVTTTDKPFTRRGVLSVVNSLYDPLGFVAPITIQGK
SLLRQLSETVKDWDTPLPTDKQSKWESWKQSLKDLEELHIPRCYTSTSLAESQRREIHIFSDASTEAIAVVAYLKVRDTC
GQPHIGFLFGKAKLAPKPEHTIPRLELCGAVLAVEIADFILCELDIHIDAVKFYTDSKVVLGYIYNQTRRFYVYVSNRVE
RIRKSTKPEQWHYVPSEINPADHATRPVSTAIFAGTSWLMGPEFLLDHSEAATTADVFSLLDPDRDPEIRPEVSTLATRA
EQRFNLGCQRFERFSKWTRLVRTIARLVHIAHCYHTQSKDAKACCGWHLCHKSPTAADIAQGERIIIRCVQQHVFSAETR
YILNKENISKNSPIANLNPVIDSDGMLRVGGRLNKATIQGNEQNPLIIPGHHHIATLLIRHHHEQVKHQGRHFTEGAIRA
AGLWIIGAKRQISNVILKCIQCRKLRGKIQQQQMSDLPADRLSTDPPFTHVGLDVFGPWTVMARRTRGGEACNKRWAVLF
TCMSVRAVHIEVIESMDTSSFINALRRFLAIRGPVRLLRSDCGTNFTGACRELQFDTQPVKDYLASNGCTWIFNPPHSSH
MGGSWERMIGITRRILDSMLMDLNSTRLTHEILTTFLAEVSAIINSRPLVPVSTDPEFPVILTPATLLTQKMGNAPVPPG
DFAAGNLYQSQWKRVQHLANYFWNRWKKEYLTLLQGRRKWQRLTPNLQVGDLILLKDQQAQRIDWPLGLITKIIPSDDGK
VRKVEVRVAKDGTTKTFSRPITELILLLPFEH
>BEL-1_NVi#LTR/Pao 389-5537 via tfasty with DIVER, 2 frameshifts. [Nasonia vitripennis]
MAPPLRKLVASQARRLTEIRGLRSRLLAKPPASLNKNILQARVDALKEVWDEARRTHSEIVARDDAEADAYVTEDNFGDL
QGAYEEALDEFLTLLSQFEVADQSTLPGGLLNSTASDAGFTKLPKINLPSFSGNYEDWASFRDNFRNMVHDLPRISDATR
LQYLKMCLTGSAADLVKEIPTTNANYASTWKALELRYHNPRLIITRYLTAFMALPHLKKESGDELRFFIDEATRIVRALE
NLKMPIDQWDVWFVFLLSERLDPESRSRWESLLSEKERKKIESGAGVGQEVTESSYTPATFHEFIEFLETRAQTLGVLAP
DRRGEKRSAAPLKSIHPRKVFHANSSQCPLCAGPHALMRCSQYKEKKPQDRQKEVKRLRLCFNCLGHHRANSCSSSGRCS
ECKQKHHSSLHDPSRSSQGSSSTAPKKDQGNSGSGSAVVLHAANSLVSSRKILLATARVLVVGPKNKGTYVRALLDQGSE
ASFVSEAIVQLLELPKRRTHVPLSGLGASAAGTARSIVPLTLRSAVDPGFQVETEMLVLPKLTSLLPSYEVSEKLAREQF
SGVTLADPEFAISKKIDMILGADLYGQLLRSGVKKSSTSQLVAQNTVLGWIVSGPMDSGMTRRAAGAATQAPVQAFHCAP
QDDLENLLQRFWTLEEFLSPSFKMKPEDERCERIFQDTHRRDAQGRYVVKLPLKPDLPSVGAETRRMALGSLSNLHRRFS
RDSRIANSYREFMEMYEKLGHMTRVPPSEVHKADAWYLPHHPVVQMLLLIWKLRVVFDASRRTKDGHSLNAFLLTGPPLQ
SDLSLILLNWRRYRFVFTADIIKMFRQIQVEPEHQDYQRIVWSPDAASEPVDFRLTTVTYGTACAPYLAIRTLSQLVKDE
GHRFPLGARCLGIELDKWAANHQELLPDSAQQVSEKQIGEDESVKALGVHWVPSQDNFKFNAVNLENVAAAYTKRSVLSN
IARLFDPLGWLAPVTVMAKILMQDMWILKCDWDSPLPAEIRERWYDYCKGLSALPSLSIERWLGGTANCSYQIHGFSDAS
SRAYAAVVYLRIDEGNGRFRVSLLAAKSKVAPVKTVSIPNLELCGAALLVKLILHVTKLEFLRGLPIFAWSDSQIVLTWL
RKHPCHWKTFVANRVSLIQTELPSATWAHVPTKENPADLATRGVQPGELANCALWWQGPAWLSLSPTEWPRPADPVRVNH
ARPRSEESEILTRFSSLTRLVRVVAFCRRALDRIRIRGTPAESASSPFLTTAELSAARVAVIRLAQAGAFAEEIKLLRSG
KRLPKGNRLSNLNPFLGEEDGLLRVGGRLAHSGLSFDRKHPPILPQNSALSLLFVRHAHHQCLHGGPTLTSSILMPQVWI
LGRNRIVKSTIRACVPCQRVKPHSAQQLMGELPADRVTSSRAFSHSGLDYAGPFQIRMSKGRGNRSFKGYIALFVCFATR
AIHLELVGDLTSASFICAYRRFVGRRGICQNLYSDNGTNFQGADKELRSMFQRASDFYKKVGAVLANDGTSWTFIPPSAP
HYGGLWEAGVKSVKHHLKRVVGEHTLTFEEFSTVLVEIEACLNSRPLGALSADVNDLRALTPSHFLNEGVSVLLPEADCP
KLPENRLSRFQLLQRIRNNFWKRWSTEYLLHLQEREKWRDPSENFAVGQLVVVKDDRYPPSKWPLGRVLEVHPGPDGLVR
VVTIKTATSSLRRHVARLCPLALDEKVKKGSVNAXRV
>BEL-2_DBi#LTR/Pao 95-5413 via tfasty with BEL-3_DWil, 3 frameshifts. [Drosophila biarmipes]
MEQLKSLVKSRARLKANITRVLAWAEQTESATHTEIVTRMELLNEVWKEFNQFSDCISLHEGVEGYVDPEIDNAVYETKY
LRANAILKERSNDLQPGTSQGSGNGSNGLHSNNDAILNLLQQNQQLFERLAVSQTTPNTPDHVGGDVTSPNSNSVLTANS
TLSELPKIQIKRFSGNYTEWPSFQDIYESTIHNKQHLSNTQKFHHLKTLLVDEAANLVRHLAITDTAYNTAWERLKERYN
RPRHIVNSFLEQFMSLPTTTKIDATVLRKVSDGANEIVRGLDAVNQTGRDCWIIYLALEKLDADTRRRWIERSMESDSPT
LEEFFKFLDSRCEELELSKRELATGSKTTTHPEKQKGSRQSMVAVESSGCTKCSSTEHTLYGCQLFLDMSGVQRRSFVKE
KSLCYNCLRPGHGVNRCKSTFKCRQCKGNHHTLLHLQPNPQAIGNLAQIAEQDEQNISASNSNTATLSHLAQGEDTQKVV
CAQGTAKSTHLTELKRSILPTAMVYVKNAKGDLVTCRLLLDTGSELSYVSERCIQALGLTRSASRILVTGISSVKADTTR
GCTTLHIKSCISDDRLVVYAHVLGRITSSLERQNIDASTLEVFKDLQLADTQFNTNTPVDILLGSEHVWSVFTGRKMYDN
KGNLIAISSVFGWVITSLITSNASNAVALTTTMEIDRTLQKFWELENVPNSTKAEPEDEKVEKHFLATHSRDENGKYVVE
LPFNAENPEFGDTLHGALKRFKSVERRLQQNEQLRTQYVYFMREYINLGHMREVPPEDIAAGNQFFLPHHPVLGRKLRVV
FDGSFRDANGKALNDTLFTGPSIQRDLFAVCLRFRMYKYAFSADIVKMFRQIWVNERHRNYQKIVWREDPSDPIKHFQLC
TVTYGTSCAPFLAVRVLEQLAVDHRDEYPIASKILLEDFYVDDVLTGSNSEDELLRNRNELIQLMSCANLELGKWVSNSP
FIHTDDTDAQLSPVKVLGLYWHPGKDILTYNVGLAANPDCTKRQVLSDVSRIFDPLGLLAPVVIQFKIIFQKLWLLNLDW
DDPLPTKLADIWLKWRKDLHTLQKFELQRFVANDADNIELHGFSDASTKAYAAVVYSRVTNDDGSISVSLVAAKTRVAPL
KQQSLPRLELCAALLLSQLIRSISSGLRHKNITVFAWSDSSIVLSWLSYAPAQLKTFVGNRTSEILDTIPRKSWRHVDSK
TNPADCASRGLMAADLIDFQLWWNGPLWLRDKEQYMVKLNDSRFGLSLLRQRIQGEVKTNCLATMADATQAHPLDELIAR
VSSWLKLVHIVAYVKRFIQRTRNPSCNKASTALTFDEVKAARIICIKHAQRCFQQDYQLLLAKKPLKNRSQLVKLAPMID
ENDLLRVGGRLQQSQLTREAKHPVLLPKTHRISKLILEHEHRVNLHPGVSSLFVIVRQKFWIIGARNLIRKITHDCLSCF
RQRYHTSQQQMADLPSIRVTQALPFVNTGCDYAGPILLKDAKVRKPRISKGYICVFVCMVTSAVHLELATDLTTETFLAA
LRRFISLRGKCSKIYSDNGTNFIGAKRSLDEMQELLSSQEHQDIVTSTLADDGIQWVLIPPRAPHWGGKWESAVRCVKLH
LRRITGNSTLTFEQMRTLLAQISAVINSRPLCYAPDTETNYLSPAHFLIGRPFTTVPDPDLSHIPVGRLGYWQSIQAMLQ
GFWKKWHQEYLTTLQQRPKWTASTPNLSIDDVVLVKESNTPPASWHIARVMETYPGKDNLVRAVKLKTPTGEMTRPITKV
AVLPNSETVFQGGP
>BEL-2_HMM#LTR/Pao 231-5441  [Heliconius melpomene melpomene]
MSQERIQTTAEQDKYLTTLQEVYNIIQKTQINLKKCPKQRLTKGYIQARLKILEDYWNTFKQAHSNLTICTPREQKGILP
YFLNEDYYQVEDLYLLLHADLSDHLIKMEAPEIANVSTVSQDAQLFSSPFVSSLPRIQLPTFSGRYEDWPTYHDLFTALV
HNTNLSNVQKLHYLKTSVSGEAELLLRQIQTLETNYVQAWDLLKGRFGNKKMILNSLLKRLFGQKKVSSQSSSQIKNILD
TTTECINSLNNLQINTSSWDPVIIFLVSQRLDPETLKDWEEFTYNNNTDQLPTWDMLKGFLEAKFRTLELIMPMSIHSKE
KSQTHKLFHVSTETTESKNIFQSAHAGVSTHPTCTYCKNCHYLFQCKDFAKLSVEQRQDVVKKNRLCFNCLIPNHNVFKC
KQTTSCRVCHRKHHSLLHQSRDTNEKKDFDKAVQLEQRITTAHFSQHQPDHEVLLATAQVEVKSCCGHKHLLRALIDQGS
EASFVSARVVDLLGLSKTKIDGVVSGVGEGNQTPIKHLVDLTITSRFNANDDIQVKAYVLKTISTRLPSKHIAINCSQLQ
TLPLADPTYNTPGRIDILLGSDIFCKIIEEGLLKMNEGVVAQKTCLGWILSGQRENKVTMNNKEHNITTLHITRIVKEDN
DILRKFWEIETEPYTKKKIFTKEEEMCEKIYKNTTKRDTEGKYIVHLPLKCSTGEAVNLCGDTKEQAIRRFQCLERKFVK
SEVLKAEYSKVINEYMDMGHMKKVETTDDNNSIYLPHHAVIREDKETSKVRVVYDASAKGSNGYSLNDCMMVGPVLQPDL
RSLITSWRTHKICVVGDIVKMYRMINMTQEHTNLQRIIWRDNPDKEVEAYNLTTVTFGTASAPYLAVRTLQQLADDEAHE
YPDIAPVIKKCFYMDDLMIGNENVEETKKMCNEIKTVLKRGGFEMQKWSSNSEEIMEYLQEEETKNTVEIKLNKIIKILG
LTWDRKDDTFKITVNLPEMRYPITKRSILSDVARLFDPFGWLSPVVISAKILIQKLWLCSLGWDDELPSNLNEEWIIYRE
RLIYLQNIKVPRWFKTTSENYNHVTMHGFADASTQAYAAVVYLRIEEGDKVHVVMIASRTKVAPLKQLSVPKLELCGSVL
LANLIIDLMEILKIPKERVFAWTDSTVVLSWLQSHPGRWHTFVANRIAEITRVIDNDRWRHVQSADNPADIATRGIAACD
LASHENWWSGPKWLKKDMSTFIINREDIPETQLELKIKCNFIVDEKPIWERFSTISRMKRVLAYCKRIFKKEKIEHKEKY
LHAVEMQNILEECIRYYQNLVYEKEIQEIKKDGKVKVRSSLISLSPFLDEKGILRVGGRLKNASIPELTKHPIIIPANQH
ITKMLVNEAHTRTLHGGIQLMMSYLRSAYWIVGLKSFVKKCIRSCKTCIVDKAKTKYQLMGNLPAVRVNQHRAFLNSGVD
FAGPIMIRTSKGRGHHTSKGYICLFVCMATRAIHLEAVTDLTSQAFIAAFRRFVARRGYCRHLWSDNGTNFVGAAKDLKD
LFQTSKNSMVKEVSEILANDGTTWHFIPPRMPTCGGLWEAGVQSAKKHLVRINKNTKLTYEEMATLLAQIEACLNSRPLC
QIDNTTEEVLTPGHFLVGEPLVSVPDICYENKNINLLTRWQFIQKLTQHFWHKWKTEYLNTLQQRHKWQKIHSSPTVGDI
VVVKDEIVPPTKWLLGRIKQLHPGTDDIVRVVTVQCKGDHEIKRPLYKLIPLPKDLE
>BEL-2_DPu#LTR/Pao 35-5471 via tfasty with BEL-6_NV, 2 frameshifts. [Daphnia pulex]
MALQTLTARRGGNRGAVTKLLTKLQGIVDDTTLDRDLKIYELDKKLQDLHSKIKLIQTLDDEIQNVTDAADVAAEIGSAD
VFNSNAFDGRDRAEFELLKLRQQVIDANAAVAAAAAATVAAAAAAANLNRPPTVPTLPVQTSSSNLPKFDLPEFDGSVLH
WRAFWDVFEFEVHNKATYTGATKLNFLNSRLNGSAKAALSGLTPNNANYPKAIDILKDRFGQDKKIVAAHMRALYNMAKP
GTDRVSLRIFSDQLESHIRGLDALGKKADSFGDLLVCILLDKFSPDLRRNLTRQHGTTEWTLEELQASIRELEILDDSPA
EQHSSKIPPAGVKKTNVFFAGASQPIKKKQRCAYCTGDHYASQCTSVGKAAERLKVAKVKKLCLNCLDASHTSLKDCPSK
YRCKYCSKAHHSSLHPENSEEVSETPSVASMSVSISPSSTLAAAIHHSESSGKFTQPYVFLKTAIVETRFKGFKERANIL
IDEGSQRTFITSRLAKLLHLKPMWRESLLLSGFSMNPTGIEYYDVTQFFIVDLSGSLIKIKAIIIDHLVSPLDDPHRNLA
ASLPHLNGLQLAHPPSEATSFDVDILIGANFYWSLVRDKVIRGAGPTATESKIGYLLSGPLSTSSVENESSDSVLTLHVS
TMENFDLSKFWTVEGLGIQPELESDTTTNIYQSQCIEFRDNQYAAKLPWKSEHPELAPNFQVCHRRTIGTIKRVSKSPSQ
LAIYQKIISDQLDRGFIEKVPPGEIYKRDCHYIPHFAIEKESATTPLRIVYDCSCKTSAGVSLNDCLETGPPLQNDMLEI
LLRFRVHRVGISADIEKAFHKVILHESDRDFFRFLWTSNISNPDADLEVYRFKVIPFGASCSPFILLSVIKHHLHSLPSL
TAVDMDLNIYVDNLISGCDSTKEAVDYYAVSNSILNKAGLNLQSWSSNDQAINVRAVEDGVADPSTSSKILGLNWDRSTD
SLSLPAFRLSTFSHATTTKRDILRGISTVFDPMGFFAPLTIAAKILNQELWKEKFDWDDPLPQKFRERFSKIAADIDNYH
PVVPRCYLECHNDLQNLHLFVDASPHAFGAVAYFCNLDRVAFVLSKSRVAPLSIGKKPPTLPQLELMAALIGSTLANTIV
KALKPLGISLTVTMWSDSQIVLYWLAQTARNKCQYVANRVDTIQKLSKDLHASWHYCPTKSNPADLLTRGISLRQFQQSS
SLWIYGPTWLSSPEDWPSWETNKLNAVVLHLAESQRGSTHQSSNYPPDSIDLFEVMDVSRYNWIPLLRVTSRILRYKSYF
LPNRHPAQAFEFLTTAELRNAELIWIRAFQQRFLQDEYRYLRSRSGARPALVSQHDLFINDDDIICCKGRLQHARIKSSA
KHPFLLPKSCDLTTLIILYHHKRMFHCGVDATCSSLRQRYWIPSIKQRVRSILRSCVTCRRVSGKPYRAPDHAPLPAFRV
SDAPPFTVVGVDYTGAYTIRGVSPKNDQKAYICLFTCASTRAIHLELVEDLSAQSFLLAFRRFVSHHSLPSMVISDNATN
FECGADFITKIFRSPEVANYLTSQQVDWQFIPKRAPWYGGFWERLIGVTKIALSKMLGRTKPTFDELRTLVAEAEFVLND
RPIEKMSADSQTEEALTPSHLMYGRRFTSLPFDHTAAEEILNDPTFGEKPSILTKSAARLEKSLCAFRKHFTTNYLTALR
EYHKATRGHHEEIVKIGDVVLVHDESPRHHWKLAVIESLIKSNDGHVRAAEIRTASGKTNRPISKLYPLEVSESTETIDI
QQSIDSSPEQIQQPIDSSPEQIQPIITSRPVRRAAAKANQLIKQMTMDEPEED
>BEL-1_DPu#LTR/Pao 556-7168 via tfasty with BEL-5_NV, 2 frameshifts. Large internal deletion. [Daphnia pulex]
SRFTFKHRLTLQQLLNMENARNFNDLTGGQLFQLRTNSKRAHTRLVTRINELIVRRASKLMLEREATALSDALAAIRNIN
DHYVIAARLDAQEQHDAEEYVLQIANLNAATHAAIQAYLETIPTPRRASWNISDNVINQPLRPIGWSITQSRNEQQINPP
VDQNASVHNGLENVGDNLQPRGGTPDQQNSRGLVQQPDPGIEPIDAKRRKMMLEYQLTQKDIQMARQLEDFQRQGQRERE
DLLSKIEHERKLIDSENLTSTQGPLLLSTPVIRTSPSAFPPAEPDASHIPIQQKTTTGSKIRWPKITVERFGGDPRKWRK
FDHGVNATIRDTSMPDSLKLLSLQDVLVDEIRKKMAHVFNNGFTFEAAWAELSSRXXXXXXXXXXGTPGLIMQAHNAHLL
QIQPFRAGDFNSLFALAADVRDAVSSVSEDHLAVFTFSTVVSSLSTKLPTQLQIDWGQHAYKLRPNLPSLKDFDNWIDIA
VGAEEYRGNRFSTAQKIVMTPALRQQSSYGADKSSAYRSPTILSNTIKEDTNRVPIPQCAACNENPGHRLENCSTFKKML
INTRAAFVADNNHCFKCLSKGHYGRNCQKTTIKCSLCGEAHHTLLHGADRQFPKKIGNLKILLVRAPSKSLRPVLLAIVP
VMAQEGAISVKSFALLDPGSEATIMSRALANKLMLSGPKLKIRFGNFNSSVVLDSEVVKFTIKSSSNVIIQASNVFIVPN
INLSPRKINCPLSKPQRTHLSDLELEKTDSSLVEILIGMDQLSAHSIKNIREPIDGEIGPTAIQTIFGWTIVGKIPSFLT
NGPSTKKNVNTHSIAEEVSLTSLADSFHSTESFGIDVVAPNVMSFDDSQCLKVLQTSIKFIRCGWQVDLPLRYSNLNLPD
NRTQAVSRYYGMERKMKKPEFQNVAIQYNAIIKKLIDSGTAVKVDKSELNGPMGMVWYLPTHYVTYPNKNKIRVVMDWAV
KFKDRCLNEELFRGPKLIPSLIGVLLRTRQFRVAISADIESFYHRIGVPQHHQTLQRFVFRPFGSQDPLSTFQMTTLVFG
AVHASTAAIWVLRHAIRQDQQCSTISATIHEDYYSDNLSKSFETEEEAIKFSHDSKTFLGNHGFNLTGFASSSSSLLATF
PPDDRAAPLRDLNFDALPTEYVFGLGWDCKNDCYRLRIKTMPSVTTKRTLLSALARSFDPLGICLPIITFAKLLFQSSCS
LRTAVPPYKKPTGWDEPLPCNIVAKWNNWAVQLQLLSEISIERCFRPSDFPLDKCVFDLIVFSDSSSAAFCAVAYLKVTC
CERIHWSFVMAKGRIAPVGIHSLSIPRLELQAAVAAVRLARTIKDELRITISSTEFRTDSQIVLHQIQSECRDYPTFVRS
RVNEILQHSTPESWAFISGEANPADDGTRGQTPSEFKKSCRWLNGPQGVQEYTPSIAFLQLQDPENLPSCVIGQLNVSPL
QCSYPAIAKAINDCHTNLADLKREVAFQLIDVPASKTELTNSNLEDALRVCLITAAEESFQREMKALRQGAPIPRDSDLR
KVNPYIDPADGILKVNGRLEHAPLAESARHPVIISPDHRLAGLIINQAHVDAHHAGVEHTLATIRTKYYLLRGRRAVRKI
IARCASCRFNNSMPSQPMMANLPKERLQPYVTPFSSCGLDLFGPLYTVIGRRTEKRWVMLANCFSTRAVHLELLYSLSRD
SCLMGVRRLIADRGRPVNIYSDNGTNFLAADKELQEGVKNLNSRLVADEVINQGINWSTSPPTGAHFNGVTERLVASAKT
SLCAVLTDGRAINDEVLLTVLKEVASLLNTRPITHVSTDPFEPEPLTPNHFILGCHHPHLPPNVEDAFHGASRKHWEQAQ
FIVNQFWRMRSREYVPELIERKKWNKKTREMRLGDRVLVLDDNTRRGLWVVATVTKLFPGDGGVVRKVLVKTSKSEFVRP
IVKLCLISDA
>BEL17_DR#LTR/Pao 44-5694 via tfasty with CATCH2_DR, 1 frameshift and 1 stopcodon. [Danio rerio]
MSQHSGDEPAVRVRRKSVLPARYDEYDLTGFTLPKPVPPPPSPLTHSPRLAECDDTQDGAFGFTPVLPGHEADSPSQWSD
DEGASDIVARENAKLHNSLWTIQQERDIFQRANEQYAKELISSSTKxDSYSSHMGQQRHESQPPAPVAPPRQYTSTHAVP
APRVWPQGGTNDMSFTPTPAPRLKYQSEYKARDQIRSLPHSSALRGNLSYHYVPQGDQSLNAHYSNPPYWHLQDPVRHPQ
IPFRTQTPSPPPEQGPYRGPTPMIPDFSHPSPREFSRLKIALENILPANATESFKFQILTDHLKLEEALLIADSYCHSQH
PYTRTMAALDQQYGQPHQLALQRIAELMDGPNIASGDQKAFRLFALKVRSLVGMLEQLGRNGSFELQCGSHVSRLLGKLP
HDLRSGFRRYAHPHQVPIPTLLDFAEWLDFEIQVQEDTTRFASSQRRMPQTRTRENLRDYKPAIKPTTIYLGTEKATVEP
IPPIPLSRSSLKPYCPYCDNSKHSLNNCSNFKQLTKDQKQSWIKENNRCWRCGRTHKSADCNLKMRCRQCSSRHLMALHE
ISVGRPENPKLTQDESADPKTCLLNTMQEILLVHKPPTSRKVLLKICRVILSNGSKRMNAYAIQDDGSERTIILHSAAQQ
LGLTGQPEELPLRTIRQELQVLKGAAVSFTVSPIAQPTKRFHITSAFTAQQLSLAEHSHPVKSLKERYRHLKGLPLQEFK
AVCPVLLIGSDYPHLITPVEPVRLGPHGGPAAIKTRLGWTLQGPVQHMPKDVTEQHCLFTSVTSSESDLYKQVEKLWQMD
VLPWRSDKACIRSRQDQEAVELLEKRTIRVEMDGVKRYATPLLRVKNMPELKAPKEAVLSQLRSTERRLAKNPQQAAAYI
TEIAKLEKSGYVKRVPPNAVTNTPCSWYIPHHMVEHNGKNRIVFNCSFQYHGQNLNELLLPGPVLGPSLLAVLLRFREHS
VAVSSDIKGMFHQVRLLPEDKPLLRFLWRELNVQEQPTVYEWQVLPFGTTCSPCCAIFALQKHILDHSHPGDDVQNSVLK
SFYVDNCLQSFTSAEAAKEFVDSIKNQLADGGFELRQWSSNIPSTINHLPPESISSSAELWISQGKSDIQESTLGLLWNH
QSDTLSYKYRAKDSRETTMRNIYRILASQYDPLGYLIPYTTRAKILVQQLWDKKRDWDDPHLPTDLLQTWTEWEAELPAL
QNIVLPRCYCSANKDTETSLRDMHVFCDASERAYGSVAYLRTEDQYGQVEVAFLTARSRVAPKKQQSIPRLELCAALTGA
QLSKVLLTELNLPIRHTILWTDSTTVLAWLQSESCRFKVFVGTRVAEIQELTEQHSWRYVPSTSNPADDITRGKSLCELN
LESCWYQGPHFLKDPANQWPECPSPKEIDRDELRKTGTHVQVCFASSDYSQFKTLEELIDFTALQGAANGNPTASDYRRA
EIDVLQKSQQESFPSDLTQLKAGKSLSSNSKLRALTPELDIETNLIRVGGRLRHSPYLGPDNMHPIILDPRHPTTKLIIQ
SYDSKLRHPGPERLFAEIRRKYWILRGREAIKHLQRECLHCQKWRKKPEVPRMADLPPARLRLFKPAFHSTGMDCFGPYT
VKTGRRNEKKWGIIFKCLTTRAVYIDILHSLETDSFLMALRRFTARRGKPQELLSDQGTNFRGGERELKEAFTALAPDLQ
SQLAKQQIEFHFNPPNSPHFGGCWEREIRSLKNALMVTLGNQSVTFEVLQTVLAEIEGILNSKPLGYTSSDASDSNPITP
NCLLMGRLDASLPLTVYPQSELVSRRRWRHSQILADQFWRHYIKFYLPGLQSRQKWQNDTPDTQVGSTVLIVDPQLPRSL
WPVGKVVDVHPGADTRVRTAKVQVGKKTYTRPVARLIQLPAIPD
>BEL14_AG#LTR/Pao 57-5753 [Anopheles genus]
MGPKKARGCKACGNQVDDTLYVQCDECDAWWHFSCAGITASVEAVEKCAWLCEECARKTLREQSSPREGNKEPKEGTSKH
VDGDLVRNLSLEAATDGGARPVTNPQRRPLLSLDEANDEIAPGTSTHVAGGPVHNLNQDAATEGGVRPVMTPKRRPLSSL
DEADRGKTSVSSNIVHRGSCPNLNLDAASDDVARQLAVLKRRQEVEKRRMELELQLKFVQEEEALLGFGENKSFSISPQL
NSFQTEKRTVKRSEEEKEEPDLTPRQEAARHMVSKELPVFSGDPAEWPIFISHYEYTTRRCGYSNWENMLRLQKCLKGPA
LEAVRSRLVLPDVVPQVIEKLRSKYGRPVHLIKTFIEKVRKIPAPQTDKLDSLVEYGEAVQCMVDHMVAAGERAHITNPL
LLQEVVGKLPTDQQLRWSHHIRGMTSVDLSTFSDYMEDLAEDAARLTTIDSPSVRGTSKGRPTKGYVHAHVDPDGATTSS
AAERQCVSCNVAGHVLSTCTNFRGLPVKDRWRRARELSVCFSCLEKHNWRSCKNRSRCGINDCAFRHHALLHDPDAIESP
STADRERRHFPRTSGSQTHQVINNYHQSNPMSALFRIVPVTAYGPGVMIKTFAFLDEGSSMTLMDEDLAKQLGVKGDRRP
LCIKWTGDTTRVEPASMMIDLQIGPVTSTKRFTLKAVRTVTSLSLPQQTFTMDDKRWDHLKQLPLPEYRDARPQLLIGLD
NLRLAVPLKTREGLAGEPVAVKTRLGWCVYGKTAGSQIGRVLHMCECGASDENSTIQGALRKFYELEQLGTVSSDVPDPD
ERRALTILETTTVRIGNRFESGLLWKTDNVELPSSLGMARRRLECLERRMERDPKLKTVVHHHIADMMEKGYIHKATSAE
LAECNSKRIWYLPLGVVTNPKKPGKVRIIWDAAAKVQGTSLNDMLLKGPDELISLPGVLFRFRMYGIAVCADVKEMFLQI
RMRDEDKHAQRFLWREDPADDIATYFVDVVTFGSACSPATAQYVKNRNAKEHAEKYPRAVRGILTSTYVDDYLDSFGTFE
EASRVSREVRGIFSNGGFVLRNWVSNNPVVLERLGGESSSPGMKSLTSTADDGERVLGLRWNPSSDQLSFYTQACVGMAE
IFETECTPTKREVLKCVMSLFDPLGLLANFTIHGRILIQDLWRAGTGWDEAISPSQMRDWRRWVDVFPLIAQLRIPRCYF
PEAREKVYENAELHLFVDASQLAYACVLYLRVVDSEGEPHCTMLCGKAKVAPLKPLTIPKMELQACLLGARLLKSTEQHH
PISVKKRVLWTDSTVALSWIHADPRNYRPFVANRVAEIQENTNVNEWRWVPTQDNPADEATKWKGRANFNWDGIWFQGPS
FLLQDEESWPTRRLVSTTPEEEIRRVNLHREKLNPGLLPLKAERFSRLERMIRTLAWIVRYVDNLMRKVGGAPLHLGILS
QDELERAETIAWKQAQGEYFQDEVRVLSVGEGTGRSTVPKESPIYGLLPYADERGVLRMRGRIGAAPELPYAARYPIVLP
RDAWITHLLVDKFHRRFRHANNETVVNELRQYFQIPKMRRLVSKVVRQCVFCHIRRTLPQIPPMAPLPKQRLTAFVRPFT
FVGLDYFGPLLVRRGRAQEKRWVALFTCLTIRAIHLEVVSSLSTDSCILAVRRFVARRGAPVEVFSDNGTNFVGASQQLR
KEIDERNDALAATFTNANTRWTFNPPGAPHMGGVWERMVRSVKAAMSTMTELQRTPDDETLLTVIVEAEGMINTRPLTYI
PLESADQESLTPNHFLLGSSSGVKQRPVAPTSLQTGLRSNWKMVQHILDGFWRRWIKEYLPVLARQSKWFETVREIEVGD
IVLIVDGGARNQWKRGIVERVVSGADGRIRQAWVRTNTGTLRRPAAKLALLEIRKGDK
>BEL35_DR#LTR/Pao 815-6577 [Danio rerio]
MESHSNEEGKTQVFEIRSEASMSKSSRRSSRSSASVAATRARAKAEAARAKASYAEKEAAMMKKKAEVEADLFVLQSQKD
ATAAAAEAAIYEAAADIEEGNIDELLSDTRSIQSQRTREYVQKHATEQHEQQLIDTLIQQPSSRSAETLHQEAMVTSRSE
NPSYRVKELEIKQEKINNRKDKVHEYRSTFQTSPTPSVKAPMFSLPYTSDLANYMVRKEMGSSGLTKFDDCPENYWAWKS
SFQDVTKDLDLTAREELDLLAKWLGPESSIQAKRIRSVHAHYPIAGVRMLWQRLEECYGSPEVIENALLSKLERFPRIAN
RDSHRLRELGDILLELESAKSSGHLQGLAILDTARGVNPILGKLPFNLQERWITYGAKVKQHLQVSFPPFGFFVQFVCEQ
AKIRNDPSFALPMHVHPMQEKCPQFNKIPVSVRKTEVLATVSNSKNKLCSEQKMLEPSVQCPIHNKPHPLSKCCGFRAKS
LDERKTYLKGLSICFRCCGSTKHIANTCGLAVKCRECNSDRHLSAMHPGPAPWIEQTLVTEQEQGEELATDMLSDVTSEC
TEICSGAPRPKSCSKICLVDVYPFDCPDKAERMYVVLDDQSNRSLAKSAFFKLFGINTNPYPYTLRTCGGTAKTMGRRAD
NFIVRSLDGNTEVSLPTLLECNMLPEDRDEIPTPEVARYFSHLKTVADKLPPFDENAPILLLLGRDILSVHKVREQYNGP
GDMPYAQRLDLGWVIVGEMCLGGVHKSNSANVYKTNILQNGRASFFPSCSKRIQVKEQFGTPVHQYQSCLPCHPVISSCT
DHLGIGVFQRTPSDNKLSLSVEDEIFLDVMNKEMHLDESNHWVAPLPFRLPHKPLPNNRDQALKRLNILQRTLQKKPEMG
EHFVEFMQNMFINKHAELAPPLLPDEEYWYLPIFGVYHPLKPGKIRVVFDSSAQCKGISLNDTLLRGPDLNNKLLGVLMR
FRKEQVAVTADVEQMFYCFKVRKDHQNFLRFLWFKDNDLSKEITEYRMSVHVFGNSPSPAVAIYGLRRAADWGEEEYGEE
AKQFIHRNFYVDDGLISVSSAAEAISLLKNTKNMLSESNIRLHKISSNSHQVMEAFPASDRANDLKDLDLTIDPLPLQRS
LGVSWSLETDCLTFQVSPVNRPFTRRGILSTVNSLYDPLGFVASVTIQGKALVRELSSDQVDWDTPLPTDKETQWKVWTN
SLADLRKVQIPRPYIPISMSQTSEREVIIFSDASTLAIAAVAYLRVASIEGQCHVGFIMAKSKLAQYPAQTVPRLELCAA
VLAVELAELITEELDMELTTVKFYTDSKIVLGYIYNTSRRFYVYVANRVARIRSSTKPEQWHHISSELNPADLGTRFVPA
DILPHTNWFCGPEFLCKPDLGAKEDSFDLVEPGKDQEIRPQVTTLVTNVTDQSLGSHRFKRFSEWTSLVRSIANLIHIVQ
SFSDMKCTLDCKGWHLCQKSHQVDWTQAKTFIIQCVQQEHYSEELKKLRKREEISQQSSLKKLAPFVDGDGLIRVGGRLQ
LAELSEQEKHPLVIPACQHVSTLLVRHYHERVAHQGRHLTAGAIRSAGLWIVKGTRLINSVIHQCVTCRKLRGRIEEQRM
SDLPMDRVTVDPPSTYVGLDVFGPWSIMSRRTRGGSAESKRWAVIFSCLSTRAVHLEVIESMSTSSFINALRRFLAVRGP
VKHLRSDRGTNFIGACRELNIKTDDPELKGYLQEQGCTWSFNVPHSSHMGGAWERMINTARCILDGLLLKSSCTRLTHEV
LTTLMSEVMAIMNARPLIPISSDPDTFEVLSPSMLLTQKASTVPASLGDFDIKDLYKKEWRKVQCLADAFWTSWKRDYLA
TLQVRRKWTEEKQNLREGDVVLLKDSNVKRNDWPIGLIVKTMASSDDRVRKVEVKIVKEGVAKVYLRPISEVVLLLPKKP
>BEL-1_CQ#LTR/Pao 1403-6783 via tfasty with BEL5_AG, 1 frameshift. [Culex quinquefasciatus]
MAPRKSLLGPTLKALTVKYQELQAALNDIFIFADKFKAETTASQVSVRLESLNKLWDVLCTTLVEIKSHKDYSPEDDPTY
KKDRETLTEGYYRVKSLLLDKLKERQEVPCEPTHNDTIVGGTDHARLPQIKLPMFKGNIDEWLSFRDLFLSLIHWKSDLP
DVEKFHYLKNCLDDKPKRIISGLSTTSVNYKLAWDRLQRYYNNHKVLKQRLVQSLFTLPTLAEESATDLHSLVDEFERVL
NTLDQVVSPVDYKDLLLVNLLVTRLDPVTRRAWEEVSTAKDLVRDSLGDFADDSREESANDTTKDTLKDLCDFLNRRIRV
LESLPPKTVNSRAVQHQQQQYVPKSKAKKVSYSTVQHAGYSCVACKDNHLLYQCSAFQRLAVSERDALLKTHSLCRNCFR
TGHQAKNCTSKYSCRNCKGRHHTLVCFQQQPERDNAVTALAVAGSNNPSNSKETQGPTTSHVANMAATNPSVSGAATQAA
SQVLLATAVVIVEDDDGNRYPARALLDSGSESNFISERLAQLMKVTREKVDISVLGIGQSGTRVKHKIHATVRSRLSNFE
RDMNFLVLSKVTVNLPTTTIATNGWSIPDGIELADPAFFQSKKVDIVLGIECFFEFFETGRRIPLGDNLPALNESVFGWV
VSGGLSVPCNSTQVKCNVSTSEKMETLMARFWSAEDVGLDDAFSPAERRCEENFQHTVQRLSDGRYSVSMPKVEGGISRL
GESKEIALRRLHATERRLARDANLRKQYTDFMDEYLELGHMSKVEATTPTQVNRCFLPHHPVVKEASITTKCRVVFDASC
KTSSGVALNDVLLAGPVIQEDLRSIILRSRIKPVMLVSDVEKMFRQIMVHPEERPLQSILWRFSPDEEVGIYELKTVTYG
TKPAPFLATRTLKQLATDDGPRFPLAARAVNQDTYMDDVITGAEDVQSAIELRKQLDEMMLRGGFKLRKWASNRQEVLAG
IAEENLAISMEEINLDTDPGVKTLGLTWMPKTDTLKFQFNIPDLGKVPELTKRFILSTIAILFDPLGLLGPVIVTAKIFM
QSLWTLLNPNGERLDWDEAVPEMVGEVWRRFHSQLALLNELRITRCVICPEVFKMELHFFSDASEKAFGSGAYLKSEDPK
GRIFVNLLTSKTKVAPLKSQAMPRLELRGGVLSAELYVQILQSLKIKIPTFFWVDAMCVLYWLQSPPSTWVTFVANRVAK
IQALTEGCVWGHVPGVENPADFLSRGVMPADLIDLVPFWKPGWVKKTNEQRQPQPKIVTTEEAEEERRNTAASVAAATTA
EFNVWFISHFSSYPDLVRRTAYWLRLKDLLRMPKEKRFKSDLLTVAELKEAEFALIRLVQKQAFADEWNKLTKGKPVANS
SPLRWFNPYISDEQLIRVGGRLRHSLESEDTKHPIVLPARHQLARLLFRHFHEKLLHAGPQLVLGVVRLRFWPLGGRSVI
REVIHHCKECFRSKPVAVQQFMGELPSARVTTSRPFARTGVDYFGPLYVRPAPRRPAVKVYVALFVCLCTKAVHLELVTD
LSTERFIQALRRFVARRGICDDIYSDNGTNFVGARNKMAELLLLLKDRKHRDIVSKDCSNQGIKWHFNPPSAPHFGGLWE
AAVRSTKKLLLKTIGETPVTPEDLNTLLVQVEGCLNSRPLTPMSDDPNDLEPLTPAHFLVQSSLQTVPDADLSAIPMNRL
DKFQTVQRMLQDFWTRWRREYLCQLQGRVKRWKPPIQIEAGKLVVIKDENSPPMRWKMGRIFEVHPGEDGVVRVVTLKTA
DGYLKRPVEKLCILPLPEYSDAMESTDADLQTQS
>BEL36_DR#LTR/Pao 35-5773 [Danio rerio]
MSASSKSSVRSARSGKSSASSESVTRARARAEAAKVRASYASQEAKLKIEKATREAQNQLETVKLDTELEVLTLQREADV
AAVEAQVLEDAEIEMHAAAEKGESEEKVKIERTSEYVNSQLNLSRHSPSARFSALPNAPASHADSHNSFITWSPPLKDPS
HTQSINDKPKYQDADFVHLPAANLSSPSTGIIKSEVDRTNPFMNIHAKPYIPQCIPSTSTSPQAEPLAQYLARRDLVCSG
LYQFDDKPENYRSWCSSFTSAAREVNLTATQELDLMTKWLGRESGEMVRRIRSVHVSNPNLALYKAWERLRECYAAPEII
ERSLFQRLDSFPRITAKDHIKLRELGDLLMEIQGAKEDGYLTSLLYLDTSRGIAPIVDKLPYGLQDKWVTSGSWYKESHG
RFPPFDYFCSFVCHEAKKRNDPSFMYQSSAMTTVKSDKFTGKSFHTNKPISVHKTDVCAVKEDPNKICPLHNKPHPLKKC
RTFRNKLLDDRKAFLKEKGICFKCCSSISHHAKECKSFVKCFECNSTNHDTAMHPGPSPQVVKSLPPSQEDGGEGEDNSD
MTSVNTSCTEVCGPGQWGRSCSKICLVKLYPKGNKDMAIKAYVILDDQSNRSLARPEFFELFNLESEQFTYNLRTCSGTV
ETSGRKAEGFQIESLDGRVLISLPPLIECHEIMNNRFEIPTPNAVLHQPHLRHIAKYIPDLEPEAEILLLLGRDVIRAHK
VRQQVNGPNNAPFAQRLDLGWVVIGEVCLGNVHKPTVNTFKTSVLETGRHSIFQPCTSFMQVKEKQQSSVFKKATEMTLG
QTVFCKTEHDNKPAPSVEDTTFLKIMDTNVFRNESNSWVAPLPFKEPRQRLPNNKEQAINRFSSLQRTLKRKPEMQQQYV
EFMEKIFTNGHAEVAPPLKEGDECWYLPTFGVYHPQKPNQIRVVFDSSACYSGVSLNDVLLTGPDLNNSLVGVLLRFRKE
RVAILADIQQMFHCFLVRDDHRNFLRFLWYKDNDVNKEIIEYRMNVHVFGNRPSPAVAIYGLRRAIREGAKDHGEDTIKF
VERHFYVDDGVVSVPSEAEAIDLLQRTQASLAESNLRLHKFASNSQIVMKAFPPEDCAPVIKDLDLSGETSPTQRSLGLL
WEISTDTFTYSTSTTTKPFTRRGVLSTVNSVFDPLGLLAPVTIQGRALLRELTSESADWDTSLPEVKLNKWVAWRSSLQE
LEKLHVSRTYTKTSLTEAVHTELCVFSDASTKAIGAVAYLKVLQKDGQVEVGFVMGKAKLAPLSEPTIPRLELCAAVLAV
EMADLIKDELDLELNDIRFFTDSKVVLGYIYNESKRFYVYVHNRVQRIRQSSRPEQWHYVRTEENPADHASRSLPASCLA
QTSWFTGPSFLRQPPAEKTKSSKMFELIEPENDAEIRPQIQTCATYLEEAGLISTRFQRFSTFTSLVRGVALLVHVAKSF
KHSNQNSNCKGWHRCDLPRTPDELDQARNVVLKATQKAAFAKELSALLADQPVSKNSRLRKLSPIMEGNFICVGGRLKHS
EISTAEKNPIILPKESHTSLLLIRHHHEQVKHQGRHLTEGAIRAAGLWILGAKSLINSVLHKCITCRKLRGKFEEQHMAD
LPSERLKICPPFTYVGLDVFGPWSVTTRRTRGGQAESKRWAIMFGCMSSRAVHIEVIESMDASSCINALRRFFALRGPAK
QLRSDCGTNFVGACKELGMDKMVQRYLSEQGCSWEFNPPHSSHMGGSWERLIGIARRILDSMFLQLKARLTHEVLCTLLA
EVTAIINARPLLPVSADPQQPFILSPSVLLTQKTGVPPPPGDFSDKDLYTKQWRQVQALANQFWTRWSREYLPCLQHRPK
WTVPRRNLQVGDLVLLRDKQIARNCWPMARVSAVFPGKDGYVRKVEVSTTDQGNIKTFLRPISEVVLLLPKD
>GB:CAA32198 polyprotein (gypsy_Ty3-element) [Drosophila melanogaster]GB:CAA32198 polyprotein (Gypsy_Ty3-element) [Drosophila melanogaster]
MQNRNLAELVKIMQKTPAREQQPSYDVKLPKFNPDAACVEAAKWCSTTDIILTEHPLKGSKLITALSNCMEGTASQWLTQ
ISYQGMTWQEFQELFLQRFETEETPAATFLNLLNSRPTAAECYAVYASRLVTQLTTKWRNMEIEEIAVTTVLAHMANIDS
RLQRVLFTSNVRTRSKLQAELKAFTFDKKRHARDDNLGPDQKNRKASPVVCHFCSKPGRRIAECRSKMRQDRRAKPQREK
SNVTCYRCGQPGHFSNQCPKNGTAAKQDVTQQKTVNQCCVTEPKGSLHQRGEIYPICFDSGAECSLIKDDISSKLSGKRI
NNTVMIKGIGGGSVCSTLQILSEVTINENIMEILFHVVPNEEMRNDILIGREILKQGFYVILTSDNFKVVKSKTVNNCSV
TERSFTLSDIDTELVDNEKAQLIELLEKHSTSFTNGIPHTRVNTGEMKIRLIDPTKTVQRRPYRLSPEEREVVRMQVSEL
IRCNIVRPSCSPFASPMLLVKKKNGTDRLCVDFRELNSNTISDKYPLPLISDQIARLRGANYFTCLDMASGFHQIPIHPE
SVEYTAFVPDGLKNAPSVFQRTVINALGDLANSFVIVYMDDIMVVSPTKELALERLKTVLNVLTKAGFTFNLAKCSFLKT
TVQYLGYEVRAGEIRPNVRKIASLSSLPPPQTVSGVRQFIGLASYFRKFVSGFSQLMKPLYSLSSGSGKITWSAELEEIR
LKVVTILTNEPALVIFDPQYPIELHTDASACGYGAILLHRIESKPHVIEYFSKTTTSVESRYHSYELETLAVVKAVKHFR
HYLIGREFVVYTDCNSLKASRTKIDLTPRVHRWWAYLQSFNFEIQYREGKRMAHVDFLSRNPLSPEHILSINKIPEKRVN
LSEISSTWLLAEQRLDLEIIEIVNKLESDELAENLAKTYDLRKGVLYRKVQRRGRTSYLPVVPRAFKWSVINQVHESIMH
LGWQKTLDKVYQYYWFAKMNKYVRKFVSNCITCRSVKSSSGKVQAELHSIPKTSIPWHTIHIDITGKLSGKSDLKEYVIV
QIDAYTKFVYLLP
>Urukhai_Cis_hel#RC/Helitron 495-7520 Via genewise with Helitron-1_DR_hel (5 introns) N terminus incomplete.  [Ciona savignyi]
MNKXRHNFNRRKKYKKDEQFKIAAKQRVLKNYHQVEDVKKRVKKRVLDSYHGDDKIKEKMKRRVLDSYHEDDKIKEKVKR
RVLDSYHGDDKIKEKMKRRVLDxYHGDDKIKEKMKRRVLDxYHGDDKIKEKMKRRVLDSYHGDDKIKEKVKRRSSSHMKR
KYESDPKFKTALKETSKRTSKIRYEDAGLREIKKAAMGRIIKKKYYQDAEFRKNVSAQSAKRIxKLYHTDEEFKSTFVKK
VRTRQSIKTKEKKDISKCIEVFRAHCKLLPKYACCVCYREFFSKQVKQFCKSDYPPNVExYVLDFNIDGHQWICFTCMKY
MKQGKMPPQAWKNGLDLEEIAPSLKELNTLERHLISPTLPFMKIVSLPRGAQKGIHGSVVCVNADVGKTTSILPRSAASH
TLMRVKLKRKLEYKGHHLYQVITPNKVNSALEFLKENNPLFKDFDQELLDEIFKDDEDNSGAKDKQKDENAQTTPGKPDI
EVSQTTTPLVSCLQPADPAQHLLDTEDKILCLAPGEGNKPTKAMESEASCFPSLFPNAENTFVxKRPQKVSFNRYLNSRL
LSYDNRFAACPEYVFWGQFINEVTTVASSxTIAMRKNTSSTSDGTKITKRMLVSDESVEKLLRKDEAYKSLHSIRGSPPY
WEKTLRDLFAMLRQLGKPTWFCSFSAADRRWPEIVEAICAQQGVPVPELNWDTYCKLIASNPVTAARMFDQRVHHFLNDI
LRSESKPIGHIVDFFFRTEFQMRGWPHIHALFWVKDAPLYKISPDAEVFDFIDRYISCKVPDKNVDPELHEKVSKLQTHS
QKHSSSCRKGGKICRFNFPRPISSETFISEPLDKEKKTKEKRDTAMAVLQAVMDIINDKDxDVDKAVDILQKANISFKDY
VEAHDMLSTRRSVILSRDRSECWVNAYNPDLLRSWDANMDIQYILDAYSCIMYIVSYITKGEREFxNLIKQALKEAHEGN
VDALTELRLLGNKYLTHREVSIMEAVYRSIGLKMKESSRSVVFVPTDPDCVRMSLPLSRLANHAEDDTQIWMTNIVDRYC
NRPFSCHFRFMSLASFASWYKYVPKSQRSKTEVDDEAEEDRTNNSRHIxLHNNMGAIQRRLNQAIIRFPKFRQDKYPEKY
YFNLLQLYLPHQGLSLPSGYTTYEEYFDTGVVIINGEESPINKVVAIEMAKFNRLANAEDIWDELPHDAEQLQDAWSQIA
PSTEQTRQEEEDEGLEEGGIEPLEPVEPIFETGWVDGKLRDKTQHGMEYQLEPSKSRLSSDDAYKMKQNLNTQQQVVFNY
IRKWCFNVKQGNSTAPFHLFVTGGAGTGKSLLIKCIKHEASHIFSDLTNSPDDITILLTAFTGTAAFNIGGSTIHSALGI
INPKKFYVPLSEEKLTTLRCTLSSLKVMVIDEVSMVDTTLMLYISQRLNQILRPSNPNAIFGNISILAVGDFHQIPPVCG
TSLLKPTETSILDIWSQFEIYELNQIMRQKEDQSFAQLLNxARVATKTKPLSFSDKGELQKRLVDFHPNYPKDCLHIFGT
NSKVDKHNKKMLIGLKKKIVTLTAVDIIKTNKGQHFRSKTPVTYSKKDNPNLPSIVELSVGARVMVISNIDVADGLANGV
VGTVCNIIDGINQYDLPDHIAIIFDNSLIGANRKRSQPKGNYPPEAVLIQPQSSHKIKRGTRTYVRHQYPLRLSWACTVH
KIQGGTVQNIIVNMDNFFTRGMGYVALSRVTSINGLYLHSFKPENIYTADETSTALEGMRRANIFNLLDNLPEDHLHIVH
HNTQSLQKHHLSLKKLAWVKQAQVVCLSETWITDPKIYEMPGFNIHCSPRLQSRGGGLIIYINSHFRSELLFTDQTDVEL
LCVRLVSPNIVICLVYCPPSIKQPTKNILELPGRLTFLSQKFETNKIIITGDFNENLFEEKKQPIYMVLKNAGFDQHVKT
PTTDGGTLLDHMYSININNLHCATLTTFYSYHNPVCLSICLSDKCSTSFADKKENPISHNLANNQASLIGGEYILFLHDL
A
>GB:AAC33320 epigene product (gypsy_Ty3-element) [Drosophila virilis]
MLTKPLLLRLAIFKPFISLFNFSTRYSICIRLLNSLLCSIKLLKVSSVFVILTVKQWEFVICRNVYGSCFKYEISVMGFD
RINFNTLCIYIVYSY
>GB:AAC28744 env-element protein (Gypsy_ty3-like) [Ceratitis capitata]
MSYADIQIHDYSSSHLITIDNGYSKIKDGTLNFIHIIDIQAYRNVLENITDMIEKSYPPENPIYPTLQHEAQQALEMLEI
VEPIQNPRIRRSFDILGTAWKYLAGSPDHDDLNMINNNLDKLITNNNNQIFINNAVKNQINKLTEITNNILQSIKNDNMI
ANEIALNLQNRLRLIKEEIINIKYAIQWARLGIVNTIILNKKEIETFVKEFNKENMPFNTVEEALELADINVLSNSTTIL
YILKIPLTTREVYNNYIIKSVIRNDVMINLKFNNVLKNKNTIYGIKNQCKKYNKVSICKQEELLDLSNDFCISKLIKSQN
SSCHMVNSHHIPRHELITPGIIFLNDYHGNIVMNDNIRIMNGTYIINFRNASITINERTYKNFESPVMKVMPAIAQPTPI
EESITKLLSLEALSELNVNYPVEIHSLQIERTVNRISSGITLLMVIILMASAINYFHKKTKSTKPTESSSEDNQLQEIIT
EAPIPETRTFQIFQTLEDKRF
>GB:AAA28600 reverse transcriptase endonuclease (Gypsy_Ty3-element) [Drosophila virilis]
MLIDTGAAKNYVKPLTELKTITPVAKSFSVNSIHGSTEIKRKCLMNIFQHTSPFFLLDTLSSFDAIIGFDLLTQAGVKLN
LAKNTLEYQSTSEKLQYYQCADVNFTDVNDIVVPPSVKKEFRDMILRNKRAFSNRDEALPFNTAVIATIRTVDNEPVYSR
YPSLMGDSDFINKDVKQLLDDGIIRPSRSPYNSPTWVVDKKGTDSYGNPKKRLVIDFRKLNEKTIPDRYPMPRIPMILAN
LGKAKYFTTLDLKSGYHQIYLAEHDREKTSFSVSSGKYEFCRLPFGLRNASSIFQRAIDDILREHIGKICFVYVDDVIIF
SKNETEHLQHINIVLKCLIDANMRVGPEKTRFFKESIEFLGFIVTKDGATSDPKKVKAIQEFPEPKNVYSVRSFLGLANY
YRVFIKDFAAIARPISDILKGENGSVSRHVSKKIPVEFNEVQRDAFHRLRSILASEDVMLMYPNFQKPFDLTTDASASGI
GAVLSQGNRPITMISRALKQAEQNYATNERELLAIVWALGRLQNFLYGSREINIFTDHQPLTFAVSDKNTNSKIKRWKSY
IDQHNAKMFYKPGKENLVADALSRQNINALEDGPRSDAATVHSELSLTYTVETTDKPLNCFRNQIVLEESRFPLKRNLLL
FRSKTRHLISYTDKSSILKTLKEVVNSGVVNAIHCDLPTLASFQHDLILYFPATQFWHCKNLVQDITDKNEQLEIITAEH
NRAHRAAQENIKQVLRDYYFPNMASLAKEVVANSRVCTKAKYDRHPKKQELGETPIPSYTGEMLHIDIFSTDKKQFLTSI
DKFSKFAVVQPILSRTIIDVTSPLLQIVNLFPATKTIYCDNEAAFNSETITSMLRNVYGICIVNAAPLHSTSNGQVERFH
STLTEIARCLKLDKKISDTTELILKATIEYNKVLHSVTLEKPIEVVHAAASDRRGNVKNRLIKAQQDNIKRCNASRQNRV
FEVGEKVFQKNNKRLGNKLTPLCSEQKVEADLGTSVLIKGRVVHKDNLK
>Helmet_hel#RC/Helitron 3777-6747 (fragment; 3 introns with genscan, one forced) [Medicago truncatula]
MFTVIYTIEFQKCGLPHAHILVFLKPTYRCKKPKDLDKIISAEIPNKDTDGELFNIVTTLMIHGPCGDQNTRSPSMLNNK
CSKHFPMKFVDQTVIDKDGYPVYKRRDNGVYVKKGECFADNRFVVPYNKTLLLKYKAHINVEWCNQIRSIKYLFKYVNKG
HDRVTANFYGNGCENSLDEIKMYYDCRYLSACEAAWRIFSFDINYREPSVERLNYHLENEHSVLYEENDDIEQVIERSHR
KTTKFLAWMKANEKYPEARNLTYNQFPTQFVWKEKDHEWTPRRCGFSIGRVHFAPPGSGERFYLRTLLNYIKGPTSFNDM
KTVDDVKYNTFKEACFAMGLLDDDKEFIDAIIEASLWGTGIYLRRLFVALMVTDQFARPEVVWNSTNENLIDDILHKQRR
LLGAPxPNLRLTHEQLKAYAMLQSFGKSLSDFPPMPKADASLVPDVESRLIHDEMSYNRPVLAAQHDRMMSTMTLEQRNV
YDKIMTRVKEDKSGLFFLYGYGGTGKTFIWRALCAALRSDGGIVLACASSGIAALLIPDGRTAHSRFGIPFTIDECSMCG
VTPNTPLASLLIKAKLIIWDEAPMMHKHCFEALTQLGKSMMSTYLLLSRPTCLFQVQVNDYVFNLIPGEEKIYLSYDTPY
HKNIDGDAVDDIHTPEFLNTIVASGFPNHRLRLKVGAPVMLLRNMDQSLGLCNGTRLIITKMGKFVLEERLYVAISRVTS
RGGLKILIADDDGDDIDVASNVVYREVFRNV
>Helitron-1_Crp_1p#RC/Helitron 271..2061[Crocodylidae]
MAAARNWPWREKENSAFFYNPALDYGSDPLVAIGSMATSCSHCLAMRWKGEAPGICCNSGKVQLPQMNDPPEPLHTLLTG
NTPDAHHFQSNIRRYNSCFQMTSFGTTKDIRESGYMPTFKVQGQVYHRIGSLMPLPNEEPKFLQIYFMGDNTKQAEQHCN
NVIQTNLQVVLQLQDMLHKENNYVHSFKCAMEKMTPEYNVVIHADKTPAGEHERRFNAPTTSEVAVILAGEQHGNRDIVL
QLRNNSLQRIAETHRSYDALQYPLIFWQGDDGYHFELRQTNPATGLPTQKKISAMDFYAYRMMLRARSFNHILRCKDLFH
QFAVDMYAKIEAERLRFIRMNQKKLRVENYVHLRDAMNNDGDAANVGQLVILPSSFTGGPHYMHECTQDAMTYVRNYGRP
DLFITFTCNPAWAEVANELMPGQKPQDRHDLLARVFRQKVKALMNLINKGKIFGAIQCYMYTIEWQKRGLPHAHILLWLQ
DELHVHRVDDIISAELPDPEIDPLLFSIVKTQMVHGPCGSINPNSPCMKDNKCTKRFPRDLLKETQTGQDGYPLYHRRKP
EDGGFTTTIKVHSSEVQVDNRWIVPYCPLLSRLFNAHINAEYCHSVKSIKYVCKYVNKGSDMAVFGLTRDGTVHDEVRQY
ELGRCISTNEAIWRILNFPIHERHPTVLHLSVHLENGQRVYFTEENAHECTQVPQDTTLTAFFNLCRDDEFAQTLLYHQV
PRYYTWNVGTKKWARRKAGQNMPDQPDIKASDALGHVYTVHPNNFECFYLRLLLHEVTGPTSFEDLDCFCMRSQVQHHLR
TCEQWMLQSVKLTNRLASSEDSWRMIHTGTAHWKRQLQLSHQGCCKTCLPSCCRHVPCQILNNYGTTTRRIWHRIFCIRH
ECKIQTLNWTTVMPSSIKLSLSLRTRSRLWVALTSKLVAFLTHNETMIMSDNDNELINEILRETNYNIDQLTKYIQDNEP
SLVPDQREAFNKITQAVFNGSGGIFFLDAPGGTGKTFLLNLLLAKIRQTNRIALAVASSGIAATLLTGGRTAHSAFKLPL
NLASAEAPTCNIARGTGKAKVLQECQLIVWDECTMSHKAALEALDHTLQDLQHNDKTMGGVTLVLAGDFRQTLPVIPHGT
KADELQACLKASYIWKNIQRLSLMTNMRVHLTGDASAGEFAASLLKLGNGAMVSENQDGTISMNNIGKTVATLQELKEAV
FPNVAHHFHDHKWLCQRAILAPKNDAVNTINKDLLSQLPGTVQKYKSVDTVPDTNEAVNYPTEFLNSLKPPGVPSHNLEL
KIGAPIILLRNLDPPALCNGTRLAVKKLMPHVTEATIMTGHAVQDRMSSFHAFQSFPLTCHFNLNGSSSRSASVLP
>Helitron-1_BM_hel#RC/Helitron 3-5071 Fragment viae genewise with Helitron-2_AC_hel, 2 introns (321:461, 998:2236), 1 frameshift [Bombyx mori]
RLAFQYDPTANYSDDENLDIGPMTTICRYCNALKFKRETAGLCCASGKVKLDPLLTPPQPLKPLFDGTDPDSSHFLQHIL
EYDNCFRMTSFGANIIREGGFMPTCKxQGQIYxxHGSMVPTRNEPHQFLQIYFISSMVDQLNVRCNIQGxQQLKRRIIEQ
LQAFFHANNAxVNMFKTALERMPSDTHKFVIRADCTPTGEHVRRFNAPTVNDVAAIIVGDPTKSRDIVVQRRSNIMHRVN
ETHRLYDALQYPIIYWQQCSWYKEYNSFTSDTKNKLNFMDCLKVLENARLRQRVSTRRSLASYNRLAFQYDPTANYSDDE
NLDIGPMTTICRYCNALKFKRETAGLCCASGKVKLDPLLTPPQPLKXHCSMELIPNYGTPDLFITFTCNPKWTEIERELE
PGQKPQDRHDIIARVFQQKLKVMMDVLTKYRVFGDTRCYMYSVEWQKRGLPHAHILIWLLNKLHSNEVDDIVSAEIPDPV
TDPHLHDIVTTQMVHGPCGALNPLSPCMADGKCTKRYPRPLVAETVTGNDGYPVYRRRSKEDNGRTIKVKVQNQEIEIGN
EFIVPYCPLLSxIFETHANVESCHSAKSIKYLCKYVTKGSDMAVFGIASENANDEISNFQMGRYVTTNEALWRLLSFQIH
ERYPTVVHLAVHLENGQRVYFTEANAAQRAERPPSTTLTSFFAMCEADPFAATLMYVEMPKYYTWNQSTKKFQRRKQGTP
VPDWPQVFSTDALGRMYTVHPRNDECFYLRLLLVNVRGPKSFAHLKTVNGHQCQTYREACQLLGLLENDSHWDLTLADSV
VSSNAYQIRTLFAIIITTCFPSQPIQLWNKFKDDICEDILHRLRIQTNNPDIQITDEIYNEGLILIEDQCLTIANKLLIE
VGMIAPNRSMHDAFDQELNRELQYNVDTLQEFVRNNVPLLNQQQKQVYETLMQAVDNNTGGLFFLDAPGGTGKTFVVSLI
LATIRSRCDIALALASSGIAATLLDGGRTAHSALKLPLNLNTIDTPTCNISRSSAMGKLLMQCKLIVWDECTMAHKKSLE
ALNFTLKDFRRNNNIFGGSMILLAGDFRQTLPVIPRGTPADELNACLKASPLWNNVKTLSLTTNMRVQLQNDQSAARFSK
QLLAVGNGKVPVDATSGLITXPTTFCRRFVDSQLALIENVFPNISENYENYAWLSQRAILAAKNNDVHALNFTIQSKIAG
DLVTYKSVDSITNPDDVVNYPTEFLNSLEL
>Helitron-1_DYak#RC/Helitron 2551-9111 [Drosophila yakuba]
MPRLNRPTASQRARTQMLRNRINRENEGYAEVERVANTVSQRRRREDSLVRNAEQGVNTVSRRSRRLNRPVRAIEQESNS
QFRSQRRLDPAIRAVEQAADTRRRSARRQNSENRAVEQVQNTAGHRERRLDPALRAVEQAADTRRRSERRQNSENRAVEQ
VQNTAGHRERRLDPALRAIEQAADTRRRSARRQNSENRAVEQVQNTADHRERRLDPALRAVEQAADTRRRSIRRQNSENR
AVEQVQNTAGHRERRLDPALRAVEQAADTRRRSVRRQNSENRAVEQVQNTAGHRERRLDPALRAIEQAADTRRRSERRQN
SEIRAMEQEQNTANHRRRRLDTVYRAGEQEANTLRRALARDTQERLLERERDRANRARARAGRDRRAVEQARNTLARRSA
RLAARQATIDAIRNISQRVSQYRSLSANREAENLRNALRSQEIRLDIAQENRTIRIRPIEIEAHIATFNRNVKLGPDQIC
FCCKGLWFPKQISKLSRSYLEEHCEFREEIYQNARHLAFTGNLFKFCKTCHSNIKAGRKPKGAISNGLDFPEIHNSLRGL
TPLEERLISPRLPFMIIKSIGHERQSAIKGAVVNVPIPVSNIVTSLPRAFNEAEVIQLHLKRRMEYGHDFMAETIRPAKI
ADAIRYLVNTELYRKHNVSVNEQWISDFTSETVPFIASQADVAFVEGQLAIQQEDENSEARNSDQNTEAEELNPGGQETL
LENNQTHTVGMTRITIAPGEGQKPLDVILDADSEELAFPSIYAGIKRPSSESYTTIVRSELRNVDRRGCRTDKLFFNYKK
LELIKIRNNISTCLRKRSASSAITAANVLNEDFMGNLICHDEGYRILRDIRTSPAHWEDEKKKVMAMIRQFGLPTFFITL
SAAETRWPELLVLLKRNVDRVNINEEEASNLQFREKARLIRTDPVTCARYFDYRYREVLKLMKKPGGVFGSNFVTTYYWR
VEFQQRGSPHIHGMFWLKDAPKVDLNNEESIRTVIAFIDQFVTVDVTNPDLAPYIEYQKHKHGHSCLKKVRGQSICRFGI
PYPPMPQTEILNPLPEATQNSLHHENFKKIRDFLLRNHADDMISHLSIFENFLSHNHVSLSYEDYIYAIRSSLKKPQIFL
KRTFAEIQVNAYNKHILSMQRANMDIQLILDPFACCSYIINYINKSQRGISKLMREAANDIRRGNSSIRQKLQYLGHKFI
SGTEISAQEAVYCCLGMALSEASNKCVHINTFPPEQRVRMLRPTRDLQNMPQNSTDIFLKGLLDRYEQRPDFHEGLCLAD
FSANFEFSKSRRSTRQRANSDDETEEGNDVLGDVYFPLRDGSGFIRERNRASIIRYRPFNINTDRINYFRSLVMLFSPWR
NEQVDLIQRNCEEFYKENEEAIKANFEKYNAIDSLEDALRRAMEADSIEENEEEEVEHNEEFRALAIPEISSQINVLNLN
NNLLDVDPDSNIRVIKLPPLISPLNLANLVRSLNLEQKTFLTHVLHNARTNRTFYEFVGGGAGVGKSRLISTLFQSLSKE
YNGRVGCDPTSVKILLCAPTGKAAFGIGGSTLHSMFSLPVNQAGSAFRSLSPDLLNTLRSRFIDLKILIIDEISMVGATM
FSHLDSRLKQIFSNVETPFGGISVIVFGDLRQLRPVCDRWIFQAPSHDPYSAIFGSYLWSPFRFFELTEIMRQRDDQPFA
IALNNMASGQMTSDDISLLRSRISDESQIPNDSIHLFTSNQDTDRYNREKLNSIPTAQFLSEALDSVKSAQISLEQRNRC
LEQARSLKTSETQGLCTSLTLKTTAKYMMTVNVDTSDGLVNGATGVLREIGFSTSNTPDLLWIQFLDESIGVNARSKRRH
CEEASWTPISKIIKSFQINSNQATTIDRKQFPVVPAEAITIHKSQGATYSKVVVHTNSSMQRAALYVACSRATTAAGLFI
IGPFVPPRSAQDSASEAELRELRSTKLLNTHFDCLINSPNLHIFFHNTESLHCHISDVCSDRLMLRSSLLCFVEASTYSN
EVYEIPGFTTAVRLDCQSVASGARPKRGILVFIRNELFENVSLCSSGRFFSNISNLASPVFEFAIFKYRSLGILVLYKSP
TYPLKKFETEFKELFQQHTFLNSNCLVLGDFNLCLHSISGCCKQIFDFLVDVKGFSSLLDLDSSTTNSNTHIDWAFSNIF
DNRATARTFETTYSYHSGILVSVREAE
>Helitron-4_ZM_hel#RC/Helitron 4869-9140 via tfasty with Helitron4_OS_hel, 1 stopcodon [Zea mays]
MLKTVPNCGYCTAKKFEYETPGFCCRGGKVELAPLETPPQLKRLWDSADSDARHFRDNIRFFNGHFSFTSLYCCLDSMTT
NVRDSGIYTFRAQGMMYHNIKSFGREGGAEHKHLELYFYDDDPTLEHRYRKCREEHQQKDKEVIRQIVDILRGNPYSEHL
RTMGHVENLDDYRIALNLDQTLNQKTYNTPLTSEVAAVWIEGSEGRGQFSKSVMLHGKDSSSHCIRSYHGCYDALSYPLF
FPRGELGWHANIPKVGVSMDEVDAYRATHRASNANDEDAGxLFVYILKYLRIINYLFIITHFIILAYAESPSHLCVSVRD
YYCYKFQIRPGVFNPILHGKRLFQQFAVDTYIKIENSRLDYIRKNQDRLRADLYQGLVDSMLDGDIRGEKVGKRTVLSTS
FIGGPRDMRRRYMDAMALVRKFGKPDIFLTMTCNPNWDEIRRELLPGQTPQDRPDLVVRVFHAKLQELKHRLTKQDILGK
VRAYVYVVEFQKRGLPHAHFLLIMQRKYKLTCPEQYDLLISAEIPSNKYPELRKMVIKHMMHGPCGSLNPNCPCTKGRKS
CKNHYPRPFSDTTLQGKDSYPIYRRRDDDRKEKVRGCELDNRWVVPYNPYLLRLFNCHINVEACGSIKAVKYLFKYIYKG
HDRASVVMRDASKADDDVDEIKQYRDARWVTPPEALWRIYGFELSQISPPVMQLQLHLPNMHMVAFHERQMVERVVNRPG
VDRSMLTSYFEANRLHEEARGILYRDFPEWYTWQSGKGKVWQRRKRDTGGQVGRIVSAHPAEGERYYLRVLLNHVTGAAS
YVDLRTVDGVTLPTFREAAERRGLLESDNTLDECLTERALFQMPSSLRRLFATILVYCEPSDVAVLWQKHKDSMSEDYQH
KSQNKTHVEQMVLIDIRNMLQSMGKDIKTFPLPPMIDAYDDAIGTAREVYEEESIQPTVEDVALKDSLNEEQRAAYDKIM
SAVDTDQGGLFFVDGPGGTGKTYLYRVLLATLRNQGKIAVATATSGVAASIMPGGRTAHSRFKIPLTIDDGAVCSFTKQS
GTAELLRKASLIIWDEASMTKRQAVEALDNSMRDIMGRPALPFGGKTIVFGGDFRQVLPVVRKGSRAQVVASSLRMSYLW
ESMSHLKLVSNMRAKNDPWFAEFLLRVGGGTEETNSDGDIRLPDDVCVPYSGSDNDLDNLIDFAFPNLNENMSDSTYITS
RAILSTRNDWVDMINVKMIDRFQGEHMVYHSFDSAMDDPHNYYPPEFLNTLTPNGLPPHVLKLKIGCPVILLRNIDPANG
LCNGTRLVVRGFQRNSIDAEIVLGQHVGKRIFLPRIPLCPSDEEMFPFQFKRKQFPVRLSFAMTVNKAQGQTIPNVGVYL
PEPVFSHGQLYVALSRATARSNIKILVIPAVDGRKKSRKGVKKTPTVDCGTYTKNIVYKEVLTN
>Helitron-1_HM#RC/Helitron 1786-6279  [Hydra magnipapillata]
MIFLVIKFFYFIVNFRLVKKKEIISVALINMFNENDDIEMDDRLDVVLYLQDDVSAIRRVENNRRRNERNRLRRDEINCL
QNERNRLDRDNVNRRQNERNRLDRDNVNRRQNERRAVGQGRMYSIARSNAIPDYNYLGEMNQICQHCGAKKFPDETHFLC
CHNGKVALPPLSPITQALQDLFTGSYVDCNANANFLKHIRNYNACLSFASFTANVVQPMNHGLPCFKICGQIFHRVGNLR
PDQDIPPIYSQLYIYDPLAALNFRMQHYANDLCLRDLMFQLQTIIMEQSPFALAFKNMAEVEDEEIRKAAIEGRSASVVK
MSLLEGGDRRRYNLPSHDEVAVVFVGEDGAPPTSREVVIYPRGHPLKIVSSMSANLDPMVYPLFFPRGDAGWHNQLVHNP
ERATLVRNHVTLSQFYNYRLSVRQFFCSLFYGKKLFQQYAVDAYVKIEGQRLAFIRNNQNKLRSEQYDALHEHINNIAND
RNIRPGRVVVLPSSYVGSPRALKENFEDAMAIIKKYGKPDLFITFTCNPKWREITENLYPGQNANDRPDLVTRVFKLKLN
NLLNDIFKHGVLGKVVTHVQVIEFQKRGLPHAHILLHLANDDKLETSQDIDNLICAEIPDPIVNCELYDIIKTCMIHGPC
GILNPNSPCMKDGVCSKKYPKDFNANTVAVHNGYPRYRRRDNGLVINIKGNNVDNRWVVPYNPWLSKKYQAHINVEACMS
VKAVKYLYKYIYKGHDCANVLINEQVNHDEINTFLDCRYVSAPEALWRIFEYPISHMSHSIIRLKVHLPENQIVYFREGE
EQVALDRAAQRDTHLTAWFKLNSENEGANRYSYVDIPYHFVFDDKHCKWKVRQRGGNKVIVRMYKVSPTGELFFLRLLLL
QAKGAKSWEDLRTVNGIVLETFREACVFNGLLQDDTEWQNTLSEAVLTRMPKQIRQLFSIILTFCEPDDPLHLWNSYKAF
MMEDFIHRQVPFILAEQATLLQIEKIINQSGKTLSDYNLPVVDEFIDFNLENLNDNVQQSIDEANRMRPLLNVNQLNVSN
AVLAALNEQPCVENQHSRLFFMDGPAGSGKTFTYNYLIAEMSSRGVKSATAAWTGIAATLLTNGSTLHGLFKLPVPILDN
STCNVTPNSIQGQFLRQVSLFMLDETSMIPKHALNAIDRLLKDVCNNNFPFGGKVILFGGDFRQILPVVKRGRPAEVVES
CIKCSLQWQWVQKFTLTENMRVRDGEGDFSEWLLKLGSGTIPGKEEDPFKGCIEIPQQCIIRENESIVEKIFGDAQQDDY
AKRVILTPTNVDSLSINEEVLERLHGEVKTYLSADQIDTDDLNEINNFPVEFLNSLTPSGMPTHCLKLKIGCVIMLLRNL
DLKAGLCNGTRMKVCALQNNYIDAEVLTGVSEGKRVFVPRIQLAPSDSNLPFVLKRRQFPVRLAYSMTINKSQGQTFDRV
GVYLKKPCFSHGQLYVACSRTRAFNSLFFKIDKHPIQGMVGEKYYTNNVIFSNVLNL
>GB:AAA70220 unknown protein ORF3 (Gypsy_Ty3-element) [Drosophila melanogaster]
MMFIPLVVANARITDFSHANYIPVLDGDVLVFEQRDLLKHSSNLSEYASMIDETQKLSESFPHSHMRKLLEVDTDHLRTL
LSVLKVHHRIARSLDFLGTALKVVAGTPDATDLFKIKITEAQLVESNSRQIAINSETQKQINKLTDTINKVINARKGDLV
DTPHLYEALLARNRMLSTEIQNLILTITLVKSNIINPTILDHADLKPLVEQDTPIVSLIEASKIRVLQSENSIHILIAYP
RVKFSCKKVAVYPVSHQHTILRLDEDTLAECEHDTFAVTGCTDTTHFTFCERSRRETCVRSLHAGNAAQCHTQPSHLREI
NPVDDGVVIINEAAAHVSTDGSPETLIEGTYLVTFERTATINGSEFVNLRKTLSKQPGIVRSPLLNIVGHDPVLSIPLLH
RMSNENLHSIQNLMDDVESEGSPRLWFVAGVVLNFGLIGSLALYLALRRRRASREIQRTIDTFNMTEDGHKLEGGVVNN
>GB:AAC64917 gag-pol polyprotein (Ty1_Copia-element) [Glycine max]
MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKD
AWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHEFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKV
TAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDR
RQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGIQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVN
ALTGRFESAEDSSDTDSEITFDELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEDEISELKGEIGFLNSKLENM
TKSIKMLNKGSDLLDEVLQLGKNVGNQRGLGFNHKSAGRTTMTEFVPAKNSTGATMSQHRSRHHGTQQKKSKRKKWRCHY
CGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMMWVPKHKTVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCS
TSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDN
CYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSNQKLQHQ
TTSRVLELLHMDLMGPMQVESLGRKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREF
ENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLY
EIWKGRKPTVKHFHICGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKKDV
EEDVRTSGDNVADTAKSAENAENSDSATDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIISNSCFVSKI
EPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFD
ETFAPGARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYE
RLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQME
DSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGGCARYQAN
PKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSVDDRKSTFGGCFYLGTNFISWFSKKQNCVSLSTAE
AEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNLSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEE
QIADIFTKALDANQFEKLRGKLGICLLEDL
>GB:CAA37923 orf1 (Ty1_Copia-element) [Arabidopsis thaliana]
MANDPNQNTFLKASFQIFNENSDFSLWKTRMKAHLGLAGLKGIIDDFDLTVTVLIPKSEGKKIEDGDEQGDSSQTKIVPD
QVKIEKSENAMNIIIAHVGDAVLRKIDTARVQLRCGKL
>GB:AAD20307 copia-element pol polyprotein (Ty1_Copia-like) [Zea mays]
MTGEKRMFSSYEKNQDPQRAITFGDGNQGLVKGLGKIAISPDHSISNVFLVDSLDYNLLSVSQLCQMGYNCLFTDIGVTV
FRRSDDSIAFKGVLEGQLYLVDFDRAELDTCLIAKTNMGWLWHRRLAHVGMKNLHKLLKGEHILGLTNVHFEKDRICSAC
QAGKQVGTHHPHKNIMTTDRPLELLHMDLFGPIAYISIGGSKYCLVIVDDYSRFTWVFFLQEKSQTQETLKGFLRRAQNE
FGLRIKKIRSDNGTEFKNSQIESFLEEEGIKHEFSSPYTPQQNGVVERKNRTLLDMARTMLDEYKTPDRFWAEAVNTACY
AINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFILIKRGRKSKFAPKTVEGFLLGYDSNTRAYRVFNKSTGLVEVS
CDVVFDETNGSQVEQVDLDEIGEEQAPCIALRNMSIGDVCPKESEEPPSTQDQPSSSMQASPPTQNEDEAQNDEEQNQED
EPPQDDSNDQGGDTNDQEKEDEEEPRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEA
LQDSDWVVAMQEELNNFTRNEVWHLVPRPNQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARL
ESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIAN
GFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNKSTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFICQTK
YTQDILTKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAV
KRILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHC
CAQLLWMRQTLLDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKP
LDEQSFTRLRHELNILDSRNFFC
>GB:AAB04626 ORF1 of non-LTR retrotransposon (LINE-element) [Chironomus tentans]
IRHEGKSNALVPTTSGRAIHSQQNRATVNQKPQNTNPPPNNKPSNQGNENNQQNNRGKGRGKGKRRRQNKSKPRNKNNKN
QNKNSSQPIEAMAQEDTTSPMQIEVIPEPSTSGNTEKHTSSTDVQAQDTSISELKFKSLLSELLEFIAKIQNSSQRFYKQ
SAQSP
>GB:CAA36613 ORF1 (Ty1_Copia-element) [Solanum tuberosum]
MVSERTISPNIIWIKQPFTETIFLKHQQERPAKNLMTQGGNASHMPFQLTSHRLNGKNYLEWAQSVKLAIDGRGKLGHLT
GETKKPGVGEIREFTRDCLVNKFYGTSHR
>GB:AAC39021 Pol (Gypsy_Ty3-element) [Dictyostelium discoideum]
KLQENMLPYPNDNQSQSHNLLDDDEDIKEQVTKFVESIPSQLCDILVKTNPEEEEIQAVRDFINDSFEDVIVDKLPDIPD
QINNSRRGNIIHNIILKKDQDVEPTKKQIYYSTDDHKRHVEEMVLKFIDLGIIKRSESNYSSPIMLLKKRDSWRVVHDYR
QLNKVTVRDDHPFTPVDSLLNQCKDSKLFSKFDMIMGYFQVLINPEHAKYTAFITHIGKFEYTRMPQGLVNSPSTFARLM
VEIFGKIKSLLQYFDDLLVHSKLDYMVHFIEIIRMLLYCRKYLLFISREKSEMLKTEVDFLGFHIHKDGISPRAAKVRAI
SELPEPRNAKEAEAALGLFGFFRRHIENYAEKTYHLSKESKGKNKKTLSDESLKEFNNLKKEFEGENIVAIPIEQDNSIP
IDIEKVKASTDMPIHSDNNNLNNGSFHLYCDVSDKALSGVLYQIQGNKFKVIWFHCRKLTDTQKRYSIGDREFLSIIDSL
KKFQHLLIGKKVSIYTDHQNLTYIINKSNDKPFTKRQDNYMKYIKEFDYELRHISGKKNGIADFLSRKYDNFQWDESFLN
KIKEEQINSQWLLEMKKNPNLCIEEINDICYLSEDGFKKLIIIDKETIHTVIREYHDTKYSGHHALDITYNNIRQDYYFK
EMFSIIKRYIKSCATCQLNINRKDNGILQSLEIPFEVWRDISIDFLSLPKTMYAINGFTVEVDQVCVIVCRLSKMVHIVP
CHKTIDAQHTAQLLLNHVFRLHGYPRTIVSDRDPRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTERMNREIIRILTKA
STEYGENWSDIIPLIEFAMNSSMSKSTKMSPFQIVYGFNPPTPVNHFNSLTKTRIPMSNIKKIVRDNILDAQINAPKYYN
RGRGDVIFVVGEKVMVKRKFFQTNLSKDLISHKLESKNCGPFIITAVHGNNVTLDLVGYPKKHNVFNKDQIVKLYEDSEW
LREEISMPEPEEMDEASYEVESILNHDKVKKMYLVKFKGYPEPEWIREVDTDCEELVREYWNNVQKKQLNSRRERENVTT
EAVEPIVSPPLSTEVQSSQTLQPITPRQQNSISNQRNQSKKRKSRNQNTSSDDDEHDLSLQIKTTRSGRKVTPKSL
>GB:CAA25702 ORF 2, pot. reverse transcriptase (Gypsy_Ty3-element) [Drosophila melanogaster]
TGRKFSATSLGKPQYITIKYKENNLKCLIDTGSTVNMTSKNIFDLPIQNTSTFIHTSNGPLIVNKSIIIPSKILFPTTNE
FLLHPFSENYDLLLGRKLLAEAKATISYRDQEVTLYNNKYKLIEGIATHEQSHFQNVNMIPDTMLRQPNKISPILESDLY
RLEHLNNEEKQRLCALLQKYHDIQYHEGDKLTFTNQTKHTINTKHNLPLYSKYSYPQAYEQEVESQIQDMLNQGIIRTSN
SPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKT
AFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK
CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTN
PEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATK
TFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAE
EDNSDLIFITERPLNTFNRQVIFSKGPPDIKVTKYFKKHITQIFYDIMTREKAEQYLIDHFCGKKSALYIESDADFEVIQ
AAHKLAINTKYTKILRSTILLKNITTYAEFKELILTAHEKLLHPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAK
TEHRNTDMPTKTTPKPEHCREKFMIDIYSSEGKHYVSCIDIYSKFATLEEIKTKDWIECKNALMRIFNQLGKPKLLKADR
DGAFSSLALKRWLESEEVELQLNTTKTGVADIERLHKTINEKIRIIKTSDDEETKLSKMETVLNIYNHKTKHDTTGQTPA
HIFLYAGQPILDTQQNKENKINKINNDRVEYEVDTRYRKGPLQKGKLENPFKPTKNVEQTDSDHYKITNRNRITHYYKTQ
FKKRKKNNQLSISQAPGT
>GB:CAA08806 Gag protein (Gypsy_Ty3-element) [Drosophila melanogaster]
ARKLKDIMAVPQLSETHLNQLLNQIKELNYYDGAPGKLSGFVNQVEQLLSLYPTQEARQAHVIYGAVKRLLVDSALEVVT
QERANTWLDMKKALAMAFKDHRPYVTLIRQLEDISYPGSICKFIEKLETQYWIMFDKLELESDHVDKSNYTEMLNKTVKS
VIDRKLPDRIYMSLARKDIDTIYKLKQASMELGLYDAIPENHRSNRTEMNKRRNRGNYNQNNNQKYYNNRNHNYSNYYPS
MNQNHNTQPPQNPTQPMTNQNQYSPRFIPNNQRGNYYAFRRDLTQAQQNNPLNNTLNFQPSTSNNINRQGPVKRQRESQS
DQSRMDVNFHQAASDTQMIEKDIQVPM
>GB:CAA25703 ORF 3 (Gypsy_Ty3-element) [Drosophila melanogaster]
SALNFTGTWHLITLLLMLITTVHGQQIEINNIDTNHGYLLFSDKPVQIPSSFEHHCLRINLTEIDTIADYFEQRLRTDYH
APQVKFLYNKMRRELAGIALRHRNKRGLINIVGSVFKYLFGTLDENDRVDIQRKLETNAHNSVNLHELNDAIQLINDGMQ
KIQNYENNSNIINSLLYELMQFTEYIEDVEMGMQLSRLGLFNPKLLNYDKLENVNSQNILNIKTSTWINYNDNQLLIISH
IPINFSLINTVKIIPYPDSNGYQLEYTDTQSYFERENKVYNNENKEINNECVTNIIKHLKPICNFESIHTDEIIKYIEPN
TIVTWNLTQTSLKQNCQNSFNNIKIKGNKMIKVTQCKIEINSIILSENLFKPEIDLTPLYTPLNITKIKTVKHNDINEMI
SQNNITLYIFMTTVIIILILLYLYLRYVSFNPFMMLYAKLKLRKNQNQNTAQQIEMEDVPLPLLYPSIPAQV
>GB:BAA78624 Gag (Gypsy_Ty3-element) [Tricholoma nauseosum]
MDASECFDALESDVSGMRVQIDSLKSTIENFVRTLQANPTTNSSPFTTPSAPNNDVLPNASTKERAQIKPSPPAEFNGAR
AQGRAFLNSCELYISLQSHQFVDEAAKIYWAFTYMKSEHAYLYVDRILRQTKELGSLPFSTWGDFRAEFVRHFCPLNERH
RAVTRLESSTYHQGRRSVDDYIDEFKDLVDMAGYGSGLPVVVKFRRGLNREIQDQIAQMLEGRPADDDILAWYEAASLCD
ENRLTNAAFNAAFHAPTTTHTPYTFNRSLPRPNPIPTRQTPTPAVNVPVPMDVDAARSRARKLDLCYRCGEPGHRAGACP
HRQDIRMLTPEGRDKLLQDLLALVDVEEAKDQVAEEVKLEVVEEQDFPIRSE
>GB:CAA27747 ORF 1 (Gypsy_Ty3-element) [Drosophila melanogaster]
VSRVLLSMGKHRGGLKTKLNKRIAHVRWLIYGQQTPPVWSKALKLHAELDHLLQYQQELKTHKLEKTHSDNIKNIPTINE
VPKYQACPAPAPALTKPKKSCPPGCEGIWSPHCLGTCERPSTSSAAKK
>BEL-595_AA#LTR/Pao 592-5843 via tfasty with BEL-618_AA, 1 frameshift. [Aedes aegypti]
MADERTRQQLINRRTTLIAALGRAEQFVEKYVAERDRGQVKLRLENLDTVWMGLEDVQTQLEDTELTNQGMAQNLAFRSH
NETRYFQIKAALQSYLPIVPPSTNAIPQPSPSGLSAIKLPTISLPEFDGDYNNWLAFHDTFVALIHSNPEVHDIQKFHYL
RAALKGEAAQLVESIGISSANYPIAWQTLVSRYANEYLLKKRHLQALLDCPRMKKESAAALHSVVDEYERHTKTLRQLGE
PVDSWSTMLEHLLCLRLDDSTLKAWEDFATTTTNPDYACLIDFLQRRIRVLESMSVNHQAQPTPNQQSSMFRRPPFHKTV
SHAVTEATPRKCHSCDQHHPLFQCPRFEKMTVADRLKVVNDQHLCHNCFRQDHLARNCQSKFSCRHCKRRHHSLLHPGYH
PLDNDQSSTTSRTPTYTPKPIAKQDAAANHNTRPPTSTNNAVSAPTTNSSQTSNANVLLSTVVLMVLDCNGQAHPARALL
DSGSQSNIISERLCQLLRLKRNKINIPVFGVGESSSSVNHSVSATIKSRNSDFEIGLDFLVMPRITIDLPVVSSLANDWR
APKNLPLADPTFNKTGAIDMLLGAEHFFTYVNPGTRIEDGESPALIKTVFGWIVTGRNPAPLRSPPVACHVSLSDPLHEA
MERFWLLEEVENRPNYSVEEQQCESHYASNVSRTPEGRYIVRLPRRPNFDHLLGESKSAALRRFHCLERRLGREPHLMEE
YHNFLSEYLSLGHMRLVPPSEKEPLQVHYLPHHAVVKEASTTTKVRVVFDGSAKTSTGYSLNDALQVGPIVQDELLTLVL
RFRKYPIALVADIAKMYRQVILHPDDAPLQRILWRFHPNDPIATYELRTVTYGLAPSSFLATRTLQQLAADEGHAYPRGG
PALKKGFYVDDYIGGAETEEEAIETRRELDELLAKGGFQLRKWASNNAKVLEGLDPSQIGTQPTLKLDNAEPTKALGVCW
EPGTDQLRFDSAPVVGNGPPTKRSILSAVSKHFDPLGLTAPIVIRAKMLLQELWLQPCGWDDEVSDSIRTKWDSYRTDLP
KICSYRADRYAFLPNSTVQLHTFADASQQAYGACIYARSTDEKGSTNVQLIASKSKVAPLKRISIPRLELSAAVLAARLH
QRVSQALDMTFAASHFWSDSTVTLEWLRSPPYTWTTFVANRVSEIQTTTQGSYWHHIAGKQNPADLITRGMSVEEFLSSG
LWHHGPAWLTAPETEWPISTQQQKTPEEILERRRMVAAIQNKPEVNEIFDTSSCYNRLIRVTAYCLRFIHACRRQTTPSP
YPESDVITNAITVEEMSAARMKLIKLAQADVFAEDMRYLGKGKVLPKHSSMRLLSPFVDELGILRVGGRLRLSDQPYITK
HPILLPSSHPLTRLVAMHYHMRLLHGGGRVTLAAMRHEFWPIQGRRLVNSVVRNCFRCSRASPVPAKQQTGQLPLQRITP
SRPFSVTGIDYAGPVYIRAIHKRASPTKAYISVFVCFVTKAVHLELVSDLSTPAFLNALRRFIARRGCPAHIHSDNGKNF
EGARNELRELYRMLQQEESTNSVATHCANQGIQWHMTPPKAPHFGGLWEAAVKIAKKHLYRQLGNANLSFEDMSTVLTQI
EGAMNSRPLTPLTEDPNDLAVLTPAHFLIGTTLDALPDTEVSEVPINRLDHYRALQHRVQQFWHQWQAEYLQEMQKESKS
IAPNTEIKPGRMVVVVDEFLAPVKWPLARIVNAIQGPDGLIRVVDLRTSRGIIRRPITKICLLPFEDTKNA
>BEL-591_AA#LTR/Pao 43-6492 via tfasty with BEL-612_AA, 6 frameshifts and 1 stopcodon. [Aedes aegypti]
MESIPHKSLPDMHGDLTRHPAHTLDENRTDCVQCDRRNGEDAMVQCDACQMWWHFSCAGVTDSIKDRSWSCPKCHANDLC
SSVSVSRHSRTSNSSAKSERVNLQLEKLAELHAMKEKFIEEKYKLLESQLESERDHESVRSKRSRLSKQTSLAKVAMWVN
ECAEQKDDINVPVITDAGCLLPPAPSNQTKQNAATGSCIPTQVELPDKENQQSPLKHPSMPNHRSTSAVNPTMDDSKTDP
NPDEDATRHAVFSKITGNVPLAQSTPAKDPSFEQQAVVTASSVYPRAEEVANLAIAPSGMPVHTYNSVQSAPEPATYSFS
SSVPAARLMPPAIAIPQLAPIPEYSSELQSSVAQTVPRIPGPSVQQHQHGSLASSHFSTSVLPPMLHATAMPPPVSAPYR
PPSYPVFPPGYQAEPASVLAPAHGPVLAAPPVSSFSSTSAMSLLPPSAPVVPNAVPLREVSLPQPPGKPDNCPLPVNMSS
ASNDDNLQHLIRQFGSIALSPSQSPLLNANLATFAPSPSQLAARQVMPRDLPPFSGNPADWPVFISSFMNTTLACGYSSA
ENLCRLQRSLKGAAYEAVQSRLLLPESVPHIMETLHLLYGRPELLIAALLDKVRSAPPPKVDKFQSIIDFGMSIQSLCDH
LEVAGQTAHLSNPSLLAELVTKLPPHLQMEWGSYLQGFSEVNLKTFGLFMSSVVKAVSKVTVYASSSGRNSVHPKSRGSV
NSHLSDTNDSAEAKPSTVREEVKECPACKNVGHRIQDCRNFQSLSVDGRWKCVQLNKLCRNCLSSHGRRSCRKTSNCGTN
GCEYRHHPMLHSTRSTTDSQAQPSANNAENLTHRQPKQSLLFRIVPVTLHGPRGTVDTFAFLDDGSSLTLIEDSLVKELG
AEGVTMPLCLLWTANVTRTEKVEANVAGRLMTEGRQYKLDEVQTVKELSLPIQSLSYEHLSAQFAHLKGLPVKSYTKAIP
KLLIGINNLDLMVPLRVREGLRREPIAAKTRLGWCIYGGAQTMVKAISNYHACGCSLIKSPQSGQGLLRDEDAGVQPQCS
LVGVDKRALRILADTTVRIGDRFETGLLWKFDHVELPDSYGMALRRLQCLKNExVAILNSNTLQQQLEDYQIKGYAHRAT
EDELANADSRRVWYLPLGAITNPRKPGKVRMIWDARAAVNGISLNLLLKGPDQLTSLPGVLVRFRQFKVGVSSDIKEMFH
QILIRKEDRHSQRFLWRNDPSKTPDVYLMDVATFGSTCSPASAQYIKNRNAKEFQGLYPRAVEGIVDNHYVDDSLESYES
AEEAIKVSQEMRFIHKEGGFELRNWLSNSRDVLDALGEGKPGEDKRFAADKQNDYERVLGLLWLTQEDAFSFSTAMKQEI
SDLIRADEHPTKRQMLKCLMSLFDPLGLLSLFVVHGKILLQEVWREGIQWDEKVNEELHQRWKNWIRLFEEVRSLKIPRC
YFSCATKQRYQDLQLHIFVDASESAYCAIGYFRTSNADGITECALVAAKTKVAPLKTQSIPRLELLAAVLGARLSQFIEE
NHTVRITRKVFWSDSATVLCWLRADHRRYKQFVACRVGELLTITDVENWRWVPTKHNPADIATKWGHGPDLTANSIWFKG
PAFLGSSEPAWPEQKVNKPSTEEELRPCYTHKAARIPERLVELERFSRLTKAIRATAYVYRFVENLKRKIARCERFVGPL
SSEELQSAKNLLIRETQWQCFPDEMTVLKHNQSKSITEQIPLDKSSALHQLCPMLDEQAIIRVDGRIGAAPNVDKETKFP
VILPRKHKFTMLLLDNYHRRFLHGNTETVVNEVRQSYYIPRLRMAVNSAAKACQWCRIYKSLPKIPRMAPLGPLARMASF
VRPFTYTGLDFFGPLMVKIGRSSAKRWIAVFTCLTIRAVHVEVAHSLTTDSCVKCIRRFICRRGAPAEIYSDNGTNFVGA
ARLLKEQEEQLAVTFTGTATKWVFNPPGTPHMGGAWERMVRSIKTAVETAYNNNRKLDDEALETFMVEAEAIVNCRPLTY
LPLTSEESEALTPNHFLLGNSSGVRQPAVEATSSSDALRSSWHQVQQQLDVFWRRWIREYLPTLTKRPKWCGEARAIADG
QLVLVIGEGNRNEWTRGRVVQVIQGADGRIRQAIVQTARGLVRRPVARLAVLEVDEDSKTGPGGQCYGGE
>BEL-603_AA#LTR/Pao 43-6977 via tfasty with BEL-596_AA, 1 frameshift and 9 stopcodons. One poor regions between bp 667 to 895. [Aedes aegypti]
MSKAGSHGKANPRSNAGADTTLHQCMICSLPNEADRKMVQCDVCDHWFHFMCAGVNDSIEDENRSYVCVACALPAPSISS
TTSSVREARMRLEMQRLEEEKRLQERLREEREKTLQEIVGIGYPILQEMTIRLERERGEKAIAAMLTLEKEHIQQKYSLL
HTQLNDDGDVGSVRSRANRGTTSKVQDWMNQNTAVTLSTRRRVHKFDVxAVSNSLVSMVTxITRHRxNVKxxTRAKVHTG
SNPTGLTLNARxxTRASVHKSMHVFTNLTFERCRIHWLPLSHKxHGTAKMSNSEPVQRSILGATPLGLRYNQLFQLIRPx
MAINSSVAMASGNTATPSHNQQVFQSIQPVESQQVTVISQSDCVSSLAPTREYDLLFSVIAEFFLSSPLSVPPQIKQPVS
SLSMLWCYRNPIPTPSASVQEASTIPSTTCDDNNVFVISPPTCTSASYGQLPPVPCSSSSQQQSVPQTTSVSQHYPQPST
ARHGSAYPAVMSSRSVQHVQHGSLPWNASLPPPVHQSTPTSMQSGRHPLIGTVGNQSNPYTSQHQAAYGCHRQPLGANDA
AYPVVSQYIPTATAVSSQPWFNDMRNMYQNQWVSAPNQNLLTAGSQMFPNIMGNISSQGLQGHFPNQINQFTNAMPSNIM
PASSVGLNISNFPTQSGSAPCLSTGAELGPNAQQLAARHVVPKDLPPFGGNPAEWPLFWSSYENSTQMCGYSSSENLLRL
QRCLKGDARKAVNSFLLHPSNVGEIMSTLRMLYGRPDAIIGSLLNDVRNTPAPKPEKLETLVNFGLVVRNLCAHLVSAGQ
QMHLTNPILLQELVDKLPANIKLGWALHKQTVVEADLRSFSDYMSLMINAASSVTSGIGECSKSERQKGKAFVNSVRAEA
NAESSRENNNKKSSGGRNTNNSQALTSPRIRPCAVCQTDGHKPKDCPSFKAKNLADRWKTVQEAHLCKRCLYPHGKWPCK
APPCGAEGCQDNHHKFLHPGNPQNSSGFGNVASSPSNTGVVTVHQHSHQNILFRIIPVSLHANGKTAKTFAFLDGGSDST
LLENSIAKQLGLSGPTVPLCMQWTNGVQRTEEESERVELEISGNSSKRYKLSGVHTVSSLDLPRQTVDGNMLQAKFPHLK
GLPITSYDAAVPGILIGLDNTKLKTTLVIREGNGDEPVAAKTRLGWTVFGKAGTSNVATSNRVLHVCHQSKDTDLHELVK
SFFTIEGAGTDSNTLVESKLEKRAREIMEATTVRLDSGKFQTGLLWRYDKIEFPDSRPMAERRLQCLETRLSKNPTLYEK
VRQQMVEYVTKGYAHKATKQELEQASPGQTWYLPLGVVSNPKKPEKVRIVWDAAASVRGVSLNSVLLKGPDLLQSLPTVL
CRFRQREVAINADIREMFHQVYIQPEDRQAQRFLWRNNPTERMEVFVMDVAIFGATCSPCSAQFAKNLNAKEHAAEYPSA
ATAIVENHYVDDYLDSVDTIEQAIQLATEVKLVHQRGGFDLRHWLSNRKEVLEKLGEGYSDESKNFVMGKGCSSERILGM
IWLPQEDVFSFAIEYRKDLGRLLNGDVYPTKRELLSLVMSIFDPLGLVANYVIHGKVLIQDVWRTNTGWDEKIPDEIFPS
WQRWVVSLRELAQLRIDRCYFPGYTPAALETLELHVFVDASLAAYAAVAYFRIDDRGTIRCSLVSSKTKVAPLKQLSVPR
LELQAAVLGTRLMKSIIGGHTLPIRRKVFWSDSNTVLAWLRADQRRFHQFVAFRIGEIQEQTDISEWKKVPSRWNVADDA
TKWGFDSKALNSSRWVQGPEFLHKDESEWPEQSNDLITEEELRATVATHRRAEYDEIIRVRTFLKRRLGKHQMPRTGILN
SEELLEAERTIICLIQRAEFPEEHAVLNYNRQLKNGDLKAIKKISKIYKLCPFIGADGVIRKDGRIGAAPWLTLETKFPA
ILPKNHYVTALIIDEIHRKFGHSNNETVVNEVRQRYHVSELRVVVRRVAQGCQRCKVRKTVPRPPRMSPLPEVRLTPYIK
PFTYTGLDYFGPLTVRIGRSQTKRWVALFTCLTTRAVHLELAFTLSTESCKLAIRRFVARRGPPAEIFSDQGTNFQGARK
ELKEQIQRMNSELSTTFTNTTTKWKLNPPYAPHMGGIWERLVRSVKSGLAAMEISRSADEETLLTALAEVESMVNTRPLT
YLPLDAAEDHALTPNHFLLLSSNGVCQPAVIPQDEKSALRSNWNHVRVMLDRFWKRWIKEYLPAITRQSKWFGEQKPLKV
GDLVISVNENVRNSWDRGVVVNVYPGKDGRIRRADVKTTAGIFLRPVTQLAVLDVQDEGGIAEGTTSNTGRS
>BEL-610_AA#LTR/Pao 61-6778 via tfasty with BEL-644_AA, 3 frameshifts and 2 stopcodons. Tough one; some doubt in the N terminal region.  [Aedes aegypti]
MDPSESHCMLCNRPNNVDNLVQCDRCDGYVHYSCAEVGDSIADPDRSFTCKRCVENDDIVTVSSHRTSHVSSLRTSRSSN
SARIALRLQQLEKEKENRLRELEDAEKFQRLRRQVEVEFEQQQFAILDAQLQEEDEHRSFRSRVSSKQIRDSTREWVGAS
KPTDVVNAQIATTSTHLCSSQLGGTQQNADVASIDQIASTATNTEQAKEVIRTPPTGAQQGRAPITSTSAIGAFSEQQTT
QIIEHQGEASPAIIGPRADMPVETVPSSHRHTGVPKTNAFVQQKTAESLMRANMETPSLADGARIENPITAGLSTESQVR
TSVSTLHVRLQPIAEVTSTPLIPSIKRSVDSQSGYKAHHKIIAQPSNQLGVVQGQLTRNPNTVPGAESGEPPPGLNVTGQ
IPLSKFAQLGKSKKAVLQPPLERKRLNDPNPSAIIPGQCNESTLLSLPPTGYQHFSASNRQELPPTSGREQYTVTSAKHQ
SVIQPPPGYENFGEETDCSIWDSAVVISPQPGTSNLQPSLPHQPGYGYPGYKLNSTEYMPSKISTIPKSSQAGESTxTTD
VLGTTVAVxSSVRPPDQPNQSRRAGPTAEQMAARQVIPKELPVFSGDPADWPLFLSSFNNSTEACGYNDAENLARLQRCL
RGHALESVRSRLLIPESVPYVLATLERLYGRPEVIINALLKRMREIPSPRGDDLKTPIKFGMGVENLVEHMILAQQFQHI
SNPMLLQEMVDRLPPNLKLQWASYKRNYNPVNMATFNGFMKDLVTMASDVTLLTSVGQLPAEKHDRGRREKSSKEKLFVH
QQSPASTDMSGAESSGSIPKPCVNCSKTDHRIAECPVFKRLTVDERWKVLRQKGLCRICLVPHRSWPCRSKQECGVGDCR
MRHHALLHLRKAASGVPSSTTAAERNVVHQNHHSVTSCALLRYLPVTLHYNGKSVEIFAFLDDGSSSTMMDAEVAEQLGA
VGLAEPLYLGWTGDISRTEKDSQHIRVAISGFNMAKEFPLKARTVGQLKLPSQTVNYEELCLDHPYLRKLPLSSYTNAAP
RLIIGVDNAKLISALKSRESRTGQLVAVRTRLGWCLYGRHATTDSSLVDYVNTHMELHEADTDLHNLFRQFMAVDEATVK
RSPLSNEDKRASDILQKTTRRVDGRLETGLLWRSDEPSLPDSYDMAVRRMEALERKLSKDDQLREKVRGLIEEYLASGYA
HRITTAELDTTEPGRVWYLPLGVVRNPRKPEKVRLIWDAAARAKGISFNDMVLKGPDLLTALPVVLLRFRQKSVAFSGDI
KEMFHQFRIRKEDRQAQRFLYRENPGKPPQIFVMDVATFGAACSPCIAQYLKNKNAEDYKEQYPEAARAIIENHYVDDFL
DSVDTVDEAVELIEDVKHVHAQAGMEIRNFASNSSEVLERIGEASRTQQKSINLEANVERVLGMVWNPSEDTFTFELDLK
EEVQNIVANKIAPTKRQVLRTVMSLFDPLGLVAHFVVHGKLIMQRIWREGLDWDEQISGEILEDWCKWSRLLTKLNEVTV
PRCFFSGNGRAHNDAQIHMFVDASENAYACVAYLRSYGNGAPQCTLIAAKTKVAPLKPLSIPRLELQAALIGSRLLETIC
KALTIPITTRYLWTDSTTVLAWLRSETRRYHQFVGFRVGEILTTTTIDEWRKVQTKLNVADQATKWKDGPSFDPEDWWYS
GPRFLSDPAERWITDLTLHSSEELATTVDLRSSFMHHRSLHQQPFIAVDRFSSWQRLLRATAYVIRAAKLFLGLRATGPL
IQEELANAEILLWRQVQMQVYPDEYVTLVYNKEHPKEEPRRLEKTSPLYKMSPILDDNGVLRMNSRITRAPIVSRDLKYP
VFLPKEHRVTALLVESYHKRFLHRNNETVLNEMRQRFFIPQLRSVVSKIAKQCQHCRVWKATPQVPMMAPLPTIRLTPFI
RPFTHTGVDYFGPIFVKQGRSMVKRWIALFTCLSIRAVHLEVVHSLSTQSCVLAIRRFVARRGSPATFCSDNGTNFVGAS
NILKEQIRTIGKSCAATFTNTDTKWLFNPPLAPHMGGPWERMVRSVKVAMSAIADHPRHPSDEVLETIVLEAEAIVNSRP
LTYVPLEHENQEALSPNHFLLYGTQGINQPCQELTEEHVLLRDSWKLAKYLVDTFWTRWVREYLPTLTRRTKWFQPVRPL
KPGDLVVVVEEGKRNGWIRGRIIEVLPGKDGQVRRAVVQTGHGSITRPATKLALLEVQGPPTEDSGTPRYGVPELHGPG
>BEL-607_AA#LTR/Pao 737-6049  [Aedes aegypti]
MTGKKDKKLAEDKLILKRVLATRDVVERFISEYDHERDSGEVVVRLETLNRTNKEFLHIQSEIEKLDDEENFEHHMAMRN
EFENRFCKMKGFLLAKRPTERNHPLLNSTMTSSTLAPLHNVTGFHHRLPKIDLPKFSGDESRWISFRDNFLSMIHGNDDI
PMVNKLQYLLQSLEGDARKPFESVDIQADNYAPTWDALMKRYDNKRFLRKELFRRLFELPSMKRESAQELNTLVDDFQRH
VKALAKLGEPIQHWDTPLTFILCNKLDSYTLRAWEQETRQKDEVKYDELIEFLTQQVRMLKSVSSDLQYRSQGPSIKVAG
PAPKKSSTVKSIVNSATNEPKSNVPQCHACPQKHQLFQCPTFANMPVLQRRELVSQRSLCWNCFRPNHQAKACKSKFSCR
TCHAKHHTLLHDQVAPARSTPNPAGSSNTSMQQPIPSTSANVGTAGSSNPPEVNLSVQSSRSTVLLETVVLSIVDKHGKE
ITARALLDSAAMSNFITKKLANALATRQAVVDIAVAGIGESMKQIKRQISATIKSQSKPFSTTLEFLIMKKPTANLPTIA
INTASWNIPKLPLADPNFNVPGMIDIIIGGECYHEIHTGNRLSLGDGLPFLVDTLFGWTVSGKTAINSSIAPPVCYLSTV
DRSLETALQRFWELEAVDHGPTYSTEEKRCEEIYANTTTRTHSGRYVVRLPRSEDPQVTLGDSRTIATRRFYSLERRLEK
DSALKQTYHEFIDEYLHLGHMRKLDVVDDDVPHCYLPHHPVFKESSTTTKVRVVFDASCKTSSAVSLNDTLLVGPVVQQP
LVNIIIRFRFHVVAFVADVEKMYRQVLHHSVDQHFLRILFRRNPSEPLATYELLTVTYGTAAAPYLATRTLLQLAQDEGD
KYPDAVQAVVEDFYVDDLLSGADNVEAAIKKRCQITNMLASAGFPLRKWASNEPDALAEVPPEDLAIEPLHDLQDDQSVS
TLGLVWDTRTDTLRFNVEMPLPAPILTKRKIISYIARIFDPLGLVGPVIATAKMFMQRLWKLKTEDNHPYEWDRPLPPKL
QEEWKKYHATLDILSELRIPRFVSFAGAPSIQLHFFSDASELAYGACCYVRSEGDDRITVRLLTSKSKVAPLATKHSIAR
LELSAAVLSTRLFQKVEQSLRTTADVFFWTDSTTVLQWLNSAPNRWKTFVANRVSTIQSNTEGHSWKHVPGIDNPADELS
RGLMPTELPNQSRWWNGPAWLSQSPSHWPDASIPQEESSLVAEEARKVTLVSLESEGVQFADHLFSRFSTYTKLRRVVAY
CIKYIRSLRAVVQQSTEDRSLILTTVDLMKSDQALARLAQQQTFSEELSELHATGVVKGAPLKWLKPRLSDDGILRVGGR
LENANASEASKHPIILSAKHPFSRLLADHYHKTLLHAGPQLMLSTLRQRYWILGGRDLTRSTYHRCVKCFRIKPNLIQQS
TADLPISRVTPARPFSISGVDYCGPVYLKSPVRNRPPTKAYIAIFVCFSTRAVHIEPVSDLSTPAFLSALRRFIARRGRI
QELHSDNGTAFKGAANSLRRLYEMLKINNSDREAIIRWCADQEIQWKFIPPRAPHFGGLWEAAVKSRKHHLLREVGQTSL
SWEDMTTLLAQIEMCLNSRPLTPIPTESTDLEALTPGHFLVGSNLQAVPEADVANIPDNRLDHWQRTTKQLQRIWTRWYP
EYLAQLQARANKGCKSPVNLQLGRIVVIKEENLSPAQWPLGRITKLHPGKDGIVRVVSLKTATAENVVRPVAKVALLPIQ
TEEDHQSTEP
>BEL-239_AA#LTR/Pao 23-5341  [Aedes aegypti]
MKKMLMEEETKLREAELSKQKALQEKIMXXRRESMEKKKEPMRQQAELSESASASHISKSERVRNWITSQQIDKEDKGKI
QLGMSNSRIARPASPQRLNAPLLATAYPTPQFSNLSLRDDDRCIGNPELPTTYMQIAARQVTGKDLPVFSGSPENWPMFI
RIYEETTAACGFSDVENLVRLQKCLRGNALETVRSRLMMPAGVPHVIKTLQMRFGRPELIIRSLLDRVRHVPAPKPERLD
TLIDFGLAVENLVVHLQAAKQENHLTNPVLLQELVMKLPAQLRLDWARYELIHQDPTLAAFGTFMNELIQAASEVSFELP
ISLSARSEKPKDREKVFVHAHDSPDMETKPTGVVKKFPKPCIVCSVVGHRIVECEEFKAKSIDDRLKIVRQNNLCRTCLN
FHQKWPCRTWNGCNIEGCREKHHSLLHSPISSNCVHLSTNHNYILDDDCVRYPYFRILPVVVSMDNKRQLIFAFIDEGSS
STLLDRSVAEQLGLEGPTEPVTLQWTANVARQESKSKRVNLQIXAAGNTSTFQINGAHTVEQLLLPKQSVPYSALVKQYP
HLGGLPIADYEQAEPKMLIGLDNLSLCVPLKIREGRYNEPIAAKCRLGWAIYGFRTGAPMPTVSINFHVPAAQDADHELN
EQLNDFFSLDKLGSTSTFEIPESEAVKRARKLLQETTRRVSTRFETGLLWKSDTIEFPDSFPMASKRLELLERKLSRNSS
LQGQVHQKIAEYVAKGYCHRASLEELNSSDSKRVWYLPLCVVVNPKKPNKVRVVWDAAAKVNGVSFNSALLKGPDLLTSL
TSILYHFREYRIAVTGDIEEMFLRILIRPEDSSSQRFLWRENPGDNPSVYIIDVATFGSTCSPSSAQFVKNANAKDYREK
FPRASSAIIKYHYVDDYLDSFDTVEEAIEVVKQVKSIHSEGGFNLRHFLSNSNDVVLAVSEAIGNDSDEDTKQFNIVRDE
KIESVLGMKWNPSRDVFVYTLSLRDDLIVIINPSHTPSKREMLKLVMSLFDPLGFLAFYLIHGRILIQDVWATGVDWDTP
VNSELAQRWWQRISFLPSLNKVQIPRCYFHGYMDNSKQLHVFVDASDAAYACVAYLRAVGTAGVELAIVGAKSKVAPLKV
LSVPRLELMAAVIGARMVESVVTSHSYTITDVFLWSDSSTVLAWINSDHRKYHKFVGVRIGEILALTKINQWRWLPTKQN
PADEATKWGDGPEFSSNSRWFRGPPFLYQTESEWPESRISSSTEEESINGRHTVHQNSHQAIPTSIIDFSRFHKWERLLR
TQAYVIRFVNNVGSRRNGKHVEKGTLTQNELKHAERQLWKQAQAEFYYQERGVLLETQGSPAARHNVVHKASPIYKLWPY
IDEDGVMRMRGRIGAAWYATPDAKYPVILPKTHPISSLLVDWYHRRYNHANHETVVNEMRQRYEIPTLRVLVKQTSKSCF
KCRIANATPCPPPMAPLPEQRLTPFVRPFTFVGLDYFGPLIVKVGRSEVKRWVALFTCLTVRAVHLEVVHSLSSESCVMA
VRRFIARRGTPAEFFSDNGTSFVGANKQLQREIASRNEVLSSTFTNTNTRWHFNPPGAPHMGGAWERLVRSVKSAIGMII
DTPRRPTDEVLETILLDAEAMINSRPLTYIPLDTADEESLTPNHFLLGNSSGVKQPMMEMKEYRTNLRSCWALAQHITDT
IWKRWIKEYLPVITRRCKWFEEVRDIQEGDLVLMIGTAMRNQYIRGRVEKVFIGRDGRVRQALVRTATGVYRRPVAKLAL
LDVEVSGKRGPDT
>BEL-56_CQ#LTR/Pao 40-2553 Fragment (N-terminal half) [Culex quinquefasciatus]
MSDSTIVCGACGRILTDAEERTTCGNCNETYHSCCVYSTAADTKWYCPEGCLQRNLENAQAKDRSDPASSASGQEASGQP
AVVAESNMSEVAEAALEQHAEEFDADRWFREKQIEIEMELAARQAQIDRELRKREERMAEAFQKAMRRQEVALEVGLKKK
ANHERRMAELERSFQRRSSLIDKQLEQIKFNCEKPLPSSHIIDSAMEETAKTGKKNEREDDLPETESGGSLERRTKDADE
NGAKLKTQEFVSQGPNGLGQQCSGLEKAQLAAGGRLTRQSPCYPNDPEQWPESLGTREGSSKAHGVTDARNLVGLRHGIE
GAAQDTGHCPNHWSEPVFEKLQPTLECPELLPVSHPERAHELQHPKADGLAKLTSLENAGNILCEHMEAKDLTLVNPLAN
EDPASVLPDGEERHWAKKKTEATNLPSRINPNTKAGTRRRRRQLEEATLYCRKKGSSSSSRANTQQQKCYDHQLRFCGEI
GKLFDDKLFKIVTRWEIGDGVKDQLKDRCQSNARGKLYILEDLPVVNSVSISAPEGYVNAIIFGTGPGQRYGGISANAND
AATVPLVVGVTAFRPRLGDAEGKNGLQQKAEVRRAWPRFTRMQGWISTVSSTGGNNWFLSTEHLELWMSHHKLQAEELSA
LYSSRAAAKDSRLEDMIGRRNRPAGTYAELVSGGTSEPWISEKMAGGLEHGSEPDAVLQEVDRDYTKAEMARDLMDEAKD
HVLMNGGRYSGSKGNKLPQSNSTPLWIPRILAKKMGHRPTSVDAGDVDAHMDATHGRANQVCAISEENLQVLNGAQKTTA
GNVGKATNLDERGAVDLAVWKFLVNPTHRMARRMLRAG
>BEL-52_CQ#LTR/Pao 657-6009  [Culex quinquefasciatus]
MPPKAKTSLKVLQTRMKGHQTTFDNIYQFMKDWTEAVNLTEVKVRLERLDRLWDRINECREEVESHEEYTPEALAGVQDR
VTFENKYFELKSFLMDTIRENTEDSVLNTTSLSHQNTLPGSTPHVKLPQIALPKFTGNIDEWHTFRDLYTSLIHFQPDLP
DIEKFHYLRSQLLGRPLTIVESVRFTKANYSLAWELLCKEYSNTKSLHRQQVQALFDLPVLRKESASELTDLLDAFERIV
KSLDQVTQPSQYKDLLLVHLLSSRLDSSTRRSWEEHSAPKDTDSAKDLTDFLHRRVCVLKSLPTRPAEQRNETVAAKPVK
KVSTVRSCNTTTQFGPKCVACSDNHLLYTCPRFLKMSVQERDGLLRTNSLCRNCFRSDHLARDCRSRFTCRNCRGKHHTL
VCFKGKSSDPRPMTNTTTTEPTHTPMETAVDDTNTKVVNSATTSTVTCNTATGSTAGVLLLTAMVVLEDDQGHRVQARAL
LDSAAECNLMSRHMRKQLMLREARSTIQVVGIQGIASKVQAKVNVTVRSRNSQFSQPMEVYVMPKLSSQSTTAAVNTSAW
NLPAGIELADPRFLESHPIDLVLGAEHFFDYFVTGRRMQLGDNLPLLVDSVFGWVVAGRYPVDGPITSVLCDAVVSSRLD
ELIEKFWEYEEVGLENNYSPDEARCEDHFVKTTQRQPSGRYQVSLPRNEELIRSLGDSKVTAERRFFQIERRLNRDSSLR
DQYVAFMEEYEALGHMRRVSPEEEGADRFYLPHHPVVREASTTTRVRVVFDASAKTSTNLSVNDCLLSGPIIQRSLRSII
LRSRFRPIMVVADIEKMFRQVDVCPEDRRFQSILWRPTPDQPLATYEMSTVTYGTKPAPFLATRTLVQLAADEAERYPLA
SAAVKEDFYMDDAITGADDPITAKQLRVELQEMLNSGGFKLRKFASNCPEVLEGLPNEDLSIQSADGIYLDPDPMVKTLG
LIWMPHTDVFRFQFKAPPLPDTPLTKQKLFSIVASLFDPLGFIGPVITRAKIMMQLSWSLLDENGHKLTWTSPLPPRIEA
EFRKFYEQIPRLNELRIKRVVVMPGAVLIQLHFFSDASEKALGAVAYVRSEDSIGHILVAPLMSKSRVAPLKTQSIPKLE
LRGTTLAAEMYVEVMESLELCHLSPEIFFWTDSEIVLRWLAGIPATWTTFVANRVAKIQRLTENCHWNHISGKKNPADLI
SRGVAPEDLLDEPLWWEGEWLLLSMDHWPRRTVFTADGLEEERRKVVAATTADEPSFIDKYIAHYSTYTQMVRHTAWWQR
CTRNLRTPKDDRYIGPLTSAELLQAETHILQLVQGECFARELMAIGKRECVSRSSPLRWYNPFLSRDGLLRVGGRLGNSG
ECESVKHPIVLPARHTLTKLLMRHYHLNLLHAGPQLMLSTIRLRFWPLGGRNLAREVCHQCIVCYRTKPANIHQFMAELP
TPRVVPSKPFSTTGVDYFGPIYVRPGYRRTAVKAYVAVFVCFSTKAVHLELVTDLSTACFIQALRRFISRRGKCAKLFSD
NGTNFVGARNQLEDLFKLLRSKEHREAVSRWCADDGMQWSFIPPGAPHFGGLWESAVRAAKVHLLKVLGDTAVSYEDMAT
LLCQVECCLNSRPLTQLSDDPNDLEPLTPGHFLVTTSLQALPEEDLTNIATGRLDHRQQIQQCVQLYWKRWRSEYLTQLQ
GRTKWWKPPKEIKPGSLVIIRDDNQPPTRWRMARILEVFPGDDGVVRVVSLKTADGVIKRPVTKICILPVESTVADPVEN
PAENPAEAETGENAGTPAVPEGGR
>BEL-60_CQ#LTR/Pao 30-5968 via tfasty with BEL-68_CQ, 1 frameshift. [Culex quinquefasciatus]
MSDKGGPEKPGAICGKCDKMGWKRMVKCAKCRLWYHYECVRVTSGVLDAPWVCNDCLRRSIEESNEVLELHLREERRKVY
RSLQQKLEKQWREQNPGTDHTQSENVEYVKFGNTVIQIERRGGIPLATSSPSAGAEPAMKPGQSGTLQRLRELEEANRKL
RRQIELAQQSETSRGFTSHTEPAESLYEYPLPSSRLERILDPTKINPTGFLSPVVERTESSPPRDLKLKALAERQALEKK
QLEERQALEQELLDQQDLDEDLRSVRTRSSDHHSSGSNFLNVSKWLDELQISLNPVPAASETPSGSMPTPRGNRSLPALS
SISDRRGSPTPPPKPQDLSSGSRLTSSQIAARHIVKDLPRFGGNPEDWPRFIAAYERTKKMCGFENDELLDRLERCLYDK
AQLAVQNLLLHPNKVPLIIERLRTLYGNPEIIVETMVQRVRMMPRPKADRMDTIIDFGIAVQNLCATMEACQMDECLYNV
ALLQELVEYLPPSIKVNWALHRQGKLKVSLGDFGDWLGNLVEALSKVTRPQPAVKGHGVHRDRNNEHVHVHSNTLDDQTV
HETCLACGSDCQSLDKCAKFLKMSPKHRWEQIREKSICRKCLKRHFKPCDTKVPCGKNSCKFLHHELLHDNSKHKLPEEL
KATNVQSQEECNAHHCCLGSVLFKYAKVTIHGKGKSITTYAFLDSGSTCSLMEHSLWKELGLEGEQYPLCIGWTAGQGRY
EAGSVKCAVDISSIHSGHRNRLKKLHTVESLQLPAQTMNIDDLSQHYRHLSNLPIDSYENVRPRILLGMDNAFLDHPIEA
REGGENQPVAALTRLGWVVYGPCSVEENSKKNHHQEFNYHICQCDTMFAEMKQYFMLDSLGIQTPSKPLMSKDDERAMEL
LRSQTVREGNRYRTGLLWKFDEVKLPDSRAMALNRLRCLEKRMIREPELATALQAKIEDYEQKGYIRKLTDEEERAHRDR
VWYLPIFVVTNPNKPGKLRIVWDAAATVRGASLNSFLLKGPDQLAPMVNVLYRFREYRTAVTGDIREMFHQVGVHPEDQH
CQRFLWNNGRPGSTPSIYVMQVMTFGATCSPSCAQFVKNTNAERFNEDHPAAVNAIINDHYVDDMLSSVETEQEAIELAT
SVRDIHAQGGFEIRGWRSNSSSVLEALSAEQLNEKNLNVIAQFSTEKVLGMWWDSCTDTFTFKLPTKPDKELLNGSRVPT
KKEVVSVLMSIFDPLGLLANVLMFLKVLIQEIWRSKVGWEDPITATQFEKWLTWLKVIEQVENVTVPRCYRQITSSSSKT
NVQLHMFVDAGVQGCATVGYLRFEEADRIECAFVAGKTKVAPNKLTSIPRLEIDAGTMGVRLAQKIMEALRIVIHQRFFW
TDARDVLCWLHSDHRQYTQFVGFRVAEILEKSDLSEWNYCPSKLNPADDGTKWTKTPDLSKKSRWMHALCFIQEKTSNWP
EKLTHIGTTQLELKHSVGLHCATAQVIRWENFSTWKRLLRHTALCKRFVRNSKASTDKQLRTTGEITQEELQAAEAYLHR
QAQEAEYLEEIAILTKAANCDEPDRYHIPKSSSLFKLSPHLDERGVLRMSGRAGACEFIEPEVSCPVILPRNHHITVLTV
RSMHFRYHHTSNETVVNELRQRYRIPHLRRVCSQVRWSCQDCKNRSARPAAPLMADLPQARLAGFSRPFSYTGVDYFGPM
CVAVGRRVEKRWGVLLTCLVTRAVHIEIAHSLNTDSCIMAIRNFAALRGTPLELFSDQGTNFIGSDRELREALQKIDNDK
LFKEFTTPNTKWTFNPPSSPHMGGSWERMVQSVKKILTQLKLPRNPTDEVLRNTLLEIANVINSRPLTYIPIDDENSPAL
TPNHFLLGSSSGSKPLVPFSDDIATLRNNWKASQLYANIFWKRWVKEYLPTICRRTKWHQPVRPIQVGDVVVVVDPDLPR
NCWPIGRVVSTNTNNKDGQVRSAVVRSNGRYYERPVVKLAVLDVGINTSKLDNDSSVLGG
>BEL-238_AA#LTR/Pao 555-6853 via tfasty with BEL-67_CQ, 1 frameshift. [Aedes aegypti]
MPTRGYLKSGAKGDKGAKKVQPVTGDQCASGGDGGNPEVVIIEETVEGHTCKTCEGADTEEMVQCDKCDGWFHFSCVGVS
EEVADKSWSCTNCVTAKWIQRTKTALEDSTIQRNQNLDRRSTRSQPVGDQPVGNIATSTRINPVIAPSCPQKPASVVHAE
GRPADLTKMDQEKQQSVFPADDCLGVGSVNREAAKALSDISVSSSQRSAVQRAKLQLMRLEEERQFQKQQEERRRAAEER
AAQEYREFLDKKYRLLEEVVSDRSSRSHSSTSSRVNDWVQKASQVQQTEPEANGLRIENLQVPTTSLVPAQSSGQFGQHR
IRFESTAQTNSVNNVPTVQQFNQQQSRSAEQPKQQSRSAEQLFHSRFTSNQGFLATQVSQFAPPTRDPAQMNSAPAPASQ
PFNSTSFEGPNLAPPACSTGVNHQNYRGSICASQGTYREEYQDEFQLSRSQVAARQAVPRDLPTFTGNPEEWPIFLSMFN
RTTMMCGFTEEENLVRLQKSLKGKAYEAVKSRLMFPGNVAGILGTLKMLFGQPEVIIQSLIGKISSLPSIREEKLESLVE
FAVHVQNFCATVDACGMQEYMYNVSLLHQLVSKLPPSLKLSWAQHRLTVPTVTLATFSTWIYSLAEAASVVTFASSAQPE
KSSRTDARGPKKGNAYLNTHSDSSLSEENEKVSPKEYSAGKPAQMKQVCPICKGTCRSADKCKRFLELCRDSRWAAIREF
GFCRTCLRMHKGSCNAKPCGKNGCTFRHHELLHNDLKEKSQNPTASTSYESSPPDSPLPSSSGCNSHQTATCSVLFRYLP
VILYGQTDVVETYAFLDEGSELTLLDQDLADKLELDGAERPLCLRWTGGTERCEPNSRAYNLQISGIREGSQRFDLNDVR
TVKDLMLPQQSLDMAQLSEKYPHLRGLPIDSYRDVRPRILIGTKHAHLGLVMKNREGEFGQPIAVKSRLGWTICGGGSGR
GASLNYYSFHVCQCNTSSDDDLHQAMKNYFSLDSLGVTKTDKLLLPVEDQRALSMLQSLTNRKDDRYESGLLWRYDDTRL
PDSRSMALRRFQCLKKRMERDTQLQEVLKSKIVEYLAKGYIRKLSEEEIIQQVPRRWYLPVFPVTNPNKPGKVRLVWDAA
ASAYGTSLNSALLKGPDLLCSLFTILLRFRERRIGLTGDIREMFHQVLIRAEDQLSQCFYWMNDRGEAEVYAMQVMTFGA
CCSPSTAQFVKNTNAERFANEYPSAHHAITKCHYVDDMLVSVDTEEQAIELAKNVKYVHEQGGFEIRNWISNSRKVKTAL
QGEDTNEKSLDLFSELATEKVLGMWWNTREDIFTYKVGWNRYDPALLGGQRRPTKREVLRVLMTIFDPLGLISNFLSYLK
ILLQQIWRSGVQWDEEIDSEAYDKWLVWLKVLPRVEQVRIPRCYNSQDLMNETDEVQLHTMVDASENGIAAVCYLRFVKH
ESIRCSIVSAKTRVAPLKFISIPRLELEAAVIGARLARSVEASLTIEIHRKLFWSDSRDVLCWINSDHRRYSQYVGHRIS
EVLEISEAHEWRWVPGKLNSADDATKWNTLPELSSEDRWFKGSEFLWCTEDKWPKSPDRKSTTENELRPSLLLHHVLPEP
VICVTNFSTWERLCKVIAYVHRFASNCRKKGMESLITTGPLTANELFMSERTLIRLAQSESYPDEVMLLRKPSDLSSEVI
PKTSTLYQLTPWLDSNGILRMRTRIAACDYATDDAKNPIILARKHPTTSLIIDHYHRKYHHLNHETVINEIRQKFRIPHL
RTCYKQVRSNCQMCKNQHAVPQAPYMADLPPSRLAAFTRPFTHVGIDCFGPIEVVVGRRVEKRWGMLVTCLTVRAIHVEV
LHSLSSSSCIMALRNFMARRGTPQTVHSDRGTNFVGANRELLQTSEAINEDEFMKEFANRGIEWVFNPPLSPHMGGSWER
LIRTIKNNLKVVCSSRRLSDEVLRNLLAEVENIINSRPLSHVPIDEDSAPALTPNHFLLGSSNGTKPLSNLDDSGEALRQ
NWTTSQILANQFWRRWISDYLPEITRRTKWFKRSKPISVGDVVIIVDPKMPRNCWPMGKIIATKISMDGQVRSATVRTAN
GVYDRPATKLAVLDVRCAEK
>BEL-214_AA#LTR/Pao 36-6106 via tfasty with BEL-637_AA, 6 frameshifts. [Aedes aegypti]
MEGHRKPAGYSCQSCTRPDTDDEKWVACDGCSLWEHFYCAGVDESVKNQPYICRKCKAKSAVSGTSSSRINKPPPSEGRS
LRSSTAKSGLKPVNKVTQLASKFSRSVNSTTSSVRAARLQAQMKLVEEEQLLKEQELEAQEAMRKKEMEEEERQLEEKKA
LLQAETKLRQRKLQEEKEYQKKQQMIRKESLEKKNTIARQLSECSSRGGSIPDSEQQVARWLQQCSPEQLENEDYISRTG
AGEASPLIRPNPPFTNKAEHQDSDRQSHVEQQFSRILIDASDNDPPAAIHACVNHDPPQERTATKEPTKIQLATDSTEIF
VQTSPITSMLPRPYADRRIPGTQMEQPQKAYKPSQQVPHSSRQPYMDPETMTFSAVLSANQLAARQVMGKELPNFSGNPE
EWPIFICSFEQSTAACGYTDTENLIRLQRCLKGHALESVRSRLLLPSSVPQVINTLRTLYGRPELLIRTLIEKVRRTPAP
RHDRLETVVEFGLVVQNLVDHLKAAKQYTHLANPILMQELVEKLPGAVKMDWAVYKSRQPYATLPTFGDFMTGLLDAASQ
VTFELPNHIGSSKFGEQRARERGLLPHIRRSRFCTEGINAKSTTEKAGKPCAACERREVIELADCHQFKSLDVGERWEVV
HQKGLCCTCLNGHGKWPCKSWQGCGIEGCLQKHHTLLHSSSASPPRNVSVNHPMENNGMHPMFRVLPVVLYGASQKEVVF
AFVDEGSSTTFLEETIADRLGVSGHVEPLTLQWTGNIKREERNSQRIQLDVTGEDGEHRHKLCEVRTVSCLVLPSQTMNY
NDLCNRYPHLRGLPLRGYELIQPKLLIGLDNLRLAVPLKVREGGPRDPIAAKCRLGWSVYGSLAGTSPPRAVVHFHVAGP
ANSDCQLNDQLRDYFALEDAGIRGLSETLESDEERRAIEILQRTTRRTGRGFEAGLLWREDDPNFPDSYPMAVRRLKSLE
RKLEKNPLLKNRVLEQIAEYLRKGYARHCTDSELERADRKRTWFLPLGVVVHSKKPSKIRLIWDAAAMVDGVSFNSKLLK
GPDLLTPLPAVLSGFRQFPIAVCGDIKEMFHQLSIREEDRLAQCFLWRNNSTEPIQLYIMDVATFGATCSPAAAQYVKNL
NAQEFSEVYPRAATAIVEKHYVDDYLDSFATLEDAAEVVKEVTQVHSLGGFEIRGFRSNSTELLREIGQPTDDEPKNLML
ERNSATESVLGMTWNPVDDCFSYSFNLRNDLHSILDETHVPTKREVLKVVMSLFDPLGLVSHFLVHGKVIIQGTWAAGTG
WDEPLNEELLKKWRQWVSLFPKLNDLKISRCYFSPYPSNIGDIQMHTFVDASDIAYSCVIYFRLVHLGHVQVVLVGAKSK
VAPLKTLSTPRLELKAAVLGVRYAAAISEYHSIPLTRRFFWSDSTTALAWIRSDHRKFHKFVSVRVGEILTLSEPQEWRW
VQSKSNVSDEATKWNDGPNLDSHGPWFNGPKFLLLEEASWPEQRVMSTTLEEIRRVQIHREHEPAIEYFRFNKWTKLQRT
TAYVVRFIDSLRRRNVGQNLQREILTQEELARAEVLLWKMAQMEAFPEEQIVLKKTMGPPNVKHANVSKSSSIYKTWPYM
DAQGILRMRGRIGAAYYLPFQARYPVILPRQHWITTLIVDWFHHRYRHANRETVINELRQRFEVAKLRSLVQRVSKNCVW
CRINKAFPKPPVMAPLPEERLEPFVRPFTYVGVDYFGPLYVKVGRSQAKRWVALFTCLSIRAVHMEIVYSLSTESCVMAI
RRFVSRRGSPAVFFSDNGTCFQGASKQLKEEVNTRIEAIADTFTDAETKWKFIPPAAPHMGGVWERLVRSVKTALGTALE
HPRKPNDETLGTIIQEAEALVNSRPLTYIPLESADQESLTPNHFLLGSSSGNKIEPAVVTEHATLRSSWKMSQYIVGEFW
KRWVKEYLPVITRRCKWFKEAKDLAEGDLVLVVNGTERAKWVRGRIEKTFAGCDGRVRQALVRTANGVLRRPAVRLAVLD
VEERREPKELQEDPGNHLGSRAG
>BEL-612_AA#LTR/Pao 22-6176  [Aedes aegypti]
MSNPDPSATNTSDPKTPENKDLTTHCVCCDRPETVDDCVQCDQCNGWWHMMCAEVSASVADRSWTCGHCLPLSVSSRTTT
SSVRVARLALKKKQLEEQHAMEQRHLAEKYKLMEEELNEMDETSSNRSRMSRRTSLEKVKLWQRKYAEQSGDLHDIPADG
RQAAGDALCNQGTNDRGDLAHPSNVKEPTPPPPAIKSPHERAEVDVNRLDSVQRGRLNAVVIEARQESTLYKPPLNSTVK
SLSIPELNNAKWQHNTGTIPKQQKVINNPGKTDPQMPPVAPQGKPLFDHTTSTSLPPKSENSLQQIIKQFGSLAPSTMLA
FNRTNMNALGTNTLPPSGTSTGFVPQANLELSSGSVPPPAEQPNVGDLPQANSISHSVSVPPLVGLQTVGSSPQVNPGFS
IGTVPPPPGLPIVENFTPSPSQLAARQVMSRELPTFSGDPADWPIFISSFMNSTLACGYNSAENLARLQRCLKGHAYESV
KSRLLLPESVPSVIETLRLLYGRPELLISALLQNVRSVPAPKPEKLESIIDFGLAVRSLCDHLEAAGQQEHLSNPTLLME
MVEKLPAHTKLQWADYMQQHPLVNLKTFGDFMLRVVTSVSRVTMYVGGSSSDQHKTKQKGVVYAHTSEAELMHEPVFEQN
RVCFCCKKPGHRVAECSIFKAYSVDDRWKFVQSKGLCRSCLNSHGRRSCKNATQCVFEGCQYRHHPLLHSNRSDNVSERS
TQGLSTVQNHIHRQFKQALLFRIIPVVVSGPRATIETFAFLDDGSDLSLIESSLVDQLGIDGWKKPLCLKWTGNVTRIES
ESKHVRVMIRGMNSQQQFSLNDIRTVXELTLPEQSLNYDELSQRYRYLQGLPVDSYDKAVPRLLIGVNNANLTVPLQVRE
GRKDEPIAVRTRLGWCIFGGRGNVAAHSLNYHACECSNDQDLHNTVKEYFAMDDAGVKSPVVLESVDDNRARKIMEQTTV
RRGDRFETGLIWKYDVIEFPDSFNMAVKRLECLERRMMRDPTLATNLKNQIMEYQLKGYAHRATEEELSQADPKRVWYLP
LGAVTNPRKPGKVRLIWDAAAKVDGISLNSMLLKGPDQLTSLPAVLSRFRQYPVGVSADIKEMFHQLLIRPADRHSQRFV
FRNNPADPVDIYLMDVATFGSTCSPASAQFVKNQNAEAFVNIFPRAVEGIVDNHYVDDYLDSFENEDEAERVSREVRSIH
QKGGFLLRNWLSNSTIVLRGLNEEEQKDTKCLYLSGLENSDRVLGMLWKTTEDELWFPMIMKEEVQKVIESGERPTKRQM
LKCLMGIFDPLGLLSVFLVHGKILLQDVWRTGLQWDEKVPERIFERWIRWISLFPEIGNLRIPRCYFKGASAQMYGRLQL
HIFVDASEAAFSAVAYFRVVNAEGNPECSIVAAKTKVAPLKPLSIPRLELQAAVLGSRLMSFVQKSHRIEVKQRFMWSDS
ATVLAWLRSDHRRYKQYVACRVGELLSTTDVEEWRWVPTKLNPADAATKWGKNACPKDNDEWFKGPKFLRLSEEEWPKQT
SFPIQSEEELRPCFMVQEVIIPESVVDFSRFSKWRKLLGAIAYMHRFVDNCRRKHRGEAQNSIYLSPEELRRAKNTVMRA
VQWQEFPDEMITLSRGLTGLPKTSSLYQLTPTIDECGVLRVDGRIGAAPNTAFDSMFPVILPRKHLVTNLVTEDFHRAFH
HGNSETVVNEIRQFYHISRLRTVVKQIAKACQWCKVNKATPKIPRMAPLPVARLSSYSRPFTYTGIDFFGPLLVKVGRSA
AKRWICIFTCLTIRAVHVEVAHSLSTSSCMSCIRRFVCRRGAPAEIYTDNGTNFQGAERLLKEQLLKMHDELAATYTNTD
TKWIFIPPGAPHMGGAWERMVRSIKSAMETAYNSDRKLDDEGLATLVVEAEGIVNSRPLTYLPLDAAEGEALTPNHFLLG
SSRGVRQPAIPFNDPAVAVKNSWNLIQHQLDVFWKRWIREYLPMLTKRMKWFGEVTPIAEGDLVLIVDDGRRNGWIRGRV
KDVLVAADGRIRQATVQTARGILRRPVSKLAVLEVELGGKTGTDGQCYGGE
>Helitron3_rpa3#RC/Helitron ATRPA3H3p multiple exons [Arabidopsis]
MSFLKTFSDVHPRKTRWFVFVKLLRLWNWPPNYDGEEPTMILADEKGNKIDANSPLHVKKEVLISTLKEGQCCVSNRQNS
VVKREFEGDYESSYPTFTIKDTTSQLMKCVAIGRSCDEFEKKWYKKISEINFKMEPVMIILRFWKMSEFQGNPCLISVGG
CSKVYIDPNFRGLDKNTYLRNFAGSDDEDDDIFMETVESNF
>CER8_CE#LTR/Pao 9762-16924 via tfasty with CER9_CE, 3 frameshifts and 2 stopcodons. [Caenorhabditis elegans]
MASLNNGPIYPDRSDHPSPGQDARIPTSTATERVTAGRTKKRTTSLAIRLVGPLKRRINQKIEIAKRVLAESEAKMKIFP
TMPPHHLISDEDATYLDALLIRLQTVLGALEGMRDFIDDKFGDPEMAENPNQQAYYQEVIELLEKSKASSFANQLRREIE
VLRMEMRVRNIPISSFDVSTLEATDAEAGAVTDEDEADAEMEMVESTVEDQAHRSSGLHRTVTNLRTLHGASNSPAGTPL
SNRSGLSWDDGAMTLHDELRYSYMMGRVESQVDQSTPASNRGNGTRASTEQQQLHGTSSTLQGVVQGKREQIEQGPRDTP
ILRNDVPTTKGPGTLTTTEYAGPVLPTRRDRDLTMIHASAGTHTESIFHPTPGEAPLQAQVGDPLSRQMVSALEKIIQGQ
NHLQSEVHSCRDLMNGLTERVGELEAPKIVSKIKNNQKIVDDSQSDQSSDEDEGLPPKTRRNIRYVEVKKSSSLETEGIL
KYLDKFDGSTNLKTYLTDFNESVMKNRNLKPTNKFMILKTHLLGKARDCISNSSVPAEAIEKTIGSLNSIYGKDENKTSL
LAKIHVVGFSQSDVKEMRRAVVRHSNLADQLTLTGIAENDERTFTPLTSRLPQAIRTRVTQYWGQKGENATFHEIFDFVN
KCIDDIARESVLALKHLPYTGQNETSGHGIELPYEVTLNVAEAYQDLGNLKKSKYLADSPVYKPADHPDKYYDTSSGELL
EGWYAPGKGPIMNLLPKTFPIQGEIPKNPCRACGERHSSIRCTLSSKAFRQALRDAKLCPICTGTHGIVKCKCKLVCVLC
QGMHHTGGCTKREYYRDMNNYPDDAPPVQQFFRASREGRQSGTNQQxAGLGRHGDNTIVPRSPGRIATALSNIMSDFSSN
TTRAFTRQxHFSHFPSNNRSATSPNKTRCRTIRSRHFPSKTSIPAGGDRRKVGTCHGLSFLCLRTKENDCIPTLVDSGAS
ISLLAHDCAEKLKMKILATTKVYLSGFNGATTQMSHVFKLQLRKRASQSKLTLMLAGIEHMPKSPYKAPVFSEEDRTYME
NNNINHSEITSTAKLDGRRIDMVLGNDLLAWLNANQDTKKHILPSGRLVEITDLGYIVHPVPNYTVYQNQLTYMDIRNDG
TLMHVTTLLDHQAPEDWNSALTLQVEQQWRLENIGIEEPSSPDSSKKSSAKDLQASFENTLRYNSDGILEVAFPLNGNEV
RLKDNYGVALRRLHATLNALNSSKDPTLLAQYHQIFKTQEETGIIEPVTQTMKDMSKYSFMLPHRPVIKESSNTTKVRVV
YDASSHAAGQLSLNDVVHAGANMVTPLFGILLRSRFIRFMIVGDLEKAFHQIHVQPEFRNLTQFLWLKDIDKPVTMDNIC
VKRFVRLPFGMSCSPNLLGSAIVHFLAQNPDELNADILDNLYVDNILIGVDDPALIMNRITRLKEIFNKMKMNIRELEAI
DPKDRAPDTKIKFLGYKWDSCPTTDTYIIKIADVDLFHPTKRDVASKMAETFDPLGQVSPIQVPMKRLIKKLWSNDVNWK
DLIPEHLIGDWRAIQAAFNSPTVTVPRRLTTDFNYKEIQLLVFSDASQDIYAAAVYAHFSYEGLPPVTTLLTSKNKIKPS
KDDKWTIPKLELLGIEIGSNLASTIMSELRCKVSKIRLFTDSSCALYWILSKKNTRVWVANRIDQIHLNETRMRECGIDT
TIHHCPTSDNPADLATRGMSTSDLQASKLWFNGPEFLQKDPEDWPCKIEDTVTCPVEFADLVYSEMIDPSTKKLKKPLME
KAKKPSATATVLHILKLPSSFESIVPFKYTNSLRKLMLIVYRILTFISKTIPVRASDTGVLRRFNAAPNLLEKRRVARHF
IIREHYQECEELGLIFPPSLKYYVASDGLYRVVKQARSPALPAEANEPILIHPKHPLAELIMRETHEINEHEQYARAALR
TKYWIPNYYSVAKTVISKCVPCKKVHGLPYPYPHSKTLPKSRTEPSSPFQRVGLDYLGPLEYLKDDGVSLGKAYVLVYSC
FVTRAVVLRVVPDGSTEKFIMALKTIFHQVGVPQMVYSDNAPTFILGGTVLNTDISSWEDRNESLTSFMVARSIHFFRIT
TLSPWQGGMYERIVGLVKHQMHKVCEANKFDYYTLSYVVSGAQAMVNNRPLTQHARSPDDMIAIRPCDFLNPGVMIETPP
TEFTPSAQNGGPEQRVRAHLARLEESLEILWKYWSLGYLINLRASYHKNVKCSTLTPRVGQVVLVNTNLVRRHKWPLGVI
VQVHESKREDEIRTAVVRCKGKLYKRSVCQLIPLEVASSDDDSFPENTNQGDDKERVTDARKIVQHPSTTSLPKPAAALF
DPRNAHYSPELFPRSTLPNLAETSENTDDLNTQNLNIPTIPNPNSIPKKRLEGLETIGEETIFSKTST
>Helitron4_OS_p2#RC/Helitron 7512-8120 (matching RETROSAT5_p1, a gypsy element) [Oryza sativa]
MENPNGYAQQLKYLLQQVGYFQEPVYCFERITQGSLEIWKVKIFLRYQGDGEEVLTFQIRHPRITLAAAIRDVFREALLR
LCGISIPLDVANSFGMHPYHEEDDSRCRLRLTGEPEGSRCTLLSELAHTTENAYEQALEELDELRDRYANLESRYRRLAQ
EHTTLLLCQVFTIARYIESGRMGRIRRKRPLEVDPLSPPPSP
>Helitron-1_AN_hel#RC/Helitron 780-5306  [Emericella nidulans]
GDDYQQSASILANTPPPADLTDIHNAGYDEDFQAGVSDDEDEPPAAAPPLPISVGNTSVYRGYRSQLHRMRPLNIGRMDL
ECPDCHGLHWKAERDKGTSIAAPKFGKCCGGGNNFIPPVEVPTFLQRLFNGSDHDNGRHFRQNARLYNCAFSMTSFNAGE
DPRLKGQHGPFQIQGQLVHFLGPLLPDADRPPAFAQLWIYDRLTDAARDRNRALATAVRCTRFSDLRPGIVGELTEWFEL
HNRFSQQFMSATEQLFANEARGTPAELLLGPGINLVAVEGTDKRRYNLPREGEQVAALLIDPTVNDLDHGTFREVILQLR
HPVNGSGLKRIDPSHAGYLPMQYPLFFPYGDDGWHWGCRRLDGLRLSARMYHAYRVHIRRREFSPWHYGGRLWQQYLVDA
WGTIEQAKLEWIRHNQTTIRAELYSGLTDALAAADGDVLVANNTGQRVILPSNVVGTPRYMQQLFQDAMAICQFYGPPSL
FITFTANPAWDEVTRELRPGETWEDRPDIVSRVFNILRAEMVDELCKKKLFGVAPGRFFTIEYQKRGLPHMHLVLFLEER
ERFLDAAHIDEMVSAELPDPREDLELYKLVKKHMIHAPCGPVYNSRAPCCDKHSDSNMIYCTKRFPKAEQYETQPIEEGY
PLYRRRADPRGAYRIKAKNNDMVRIDNTWVVPYNPYLLKRFRSHINVEVCRGVDVIKYITKYIYKGPDRASMRSKVADEV
DLYLDARYVGASEAVWRLLRFPLHQEWPPVTALHVHEPARHLVYYNSNAGMRELEDCIDGGKSMLMGFFEYNAHAANPAN
AALALNRYLYAKMPQFFTWDKADRIWRPRTRNRFAIGRMYHCSPNAGERFYIRLLLTVCVGPVSFEDLRTHDGILYPTFK
AACNARGLLKDDREWHHAFEESVGSAIGAQLRTLFVVALTSGTLNDPPCLWEEFKCRICSDLEHYEIRRMDNPPDIEDRH
IDYGLFIIARMLAEHGERETLDRYGLPLWTAAWGRLEPQTDVLVPFIPPVDLARRVDALIPSLNIDQRRHFDTVSAAMAD
RSGECFYLQGAGGTGKTYLYTALYYHLRAQGKTVLCIASSGIASLLLPYGRTSHSTFGIPLALHEESTCAVTLRSTRARV
LAGVDLIIWDEAPMQHRHAFEAVDRLLQDILKVKQLFGGISVLTGGDWQQCLPVVPKAPRAGIISATLRRSYIWPRLRAI
LRLTQNMRLPSVGINRLFSQLLARMSVDNTMHGTLELPDYVMDSASMSVEELCERVFPAADMTHCHTADFQASDPDFFAG
RAILSMRNSALVEFNDRITDSMRSQESMRYSADEALTDNVAEGVEEITHEFLQSVDLPGLPPARLRLKVGMPIMLLRNLR
ATEGLCNGTRMQIVELCRYTIRARILTGDFRGSVHLIPRITLYSKPGDLHYVLSRTQFPVRPCFAITTNKSQGQSLQQVG
VDLRVPAFSHGQLYVAMSRVTDVRRLSVLLPPGVRTTNNVVYPEVLQDIASLDDVPDWDDGMVTDEAA
>Helitron7_OS_hel#RC/Helitron genewise with Helitron2_OS 2523-7860 (2 intron) [Oryza sativa]
MVHNNNKKCKKDEEETSKNSNIRDIIYTEKQKNIKNKRKIQYNLDYLEKIAKKKCLEIDHISSYLSTLHGMVSFTPEYIK
YLKESYENKSFIGMPEYKCKHCNAIFWFEERNKRETKKRKGEIIYSNCCKNNKIKIPPFQNPPETLARLLNNKEDNLSKH
FMQKIRQYNSLFSFTSMGGTIDKNINNGDGPYVFRVNGQIHHRIGCLLPKPNEIPKFAELYIFDTKNEIENRIHALNKEE
MGSTDINPYIVEQLKKMFDEYNPLVKTFRYARDLFEEHKGVDFSIRIIGADKGDPIQYEMPHTEDLAILIVGELNLENYK
RDIIVQNKNNGLQRISIFHPAYMALQYPLLFPYGERGFQLGIPYYNKDEDRLMFIAKNQNKLRAECLQGIFDAVQKGLTE
GNQIGKKIILPSSHVGSKRYKMQNYYDGIAICRVYGPPHLFITFTCNPRWPEITMTILENEQPNDRPDIIVRVFHIKLEQ
LIEDIQSGTIFGPTTAILYSVEFQKRGLPHVHILVWLDKKPSEITIEMIDKWISTEIPDPREDPLGYILIAEHMMHGPCG
AKNENCPCMKKGKCSKFYPKEFNDQTNFTENGFAQYKRRNTNIYIRKDNHNLDNRWVVPHNLFLLKRYQAHLNVEFVNQS
RMLKYLCKYVNKGGDKAKIIFQRIKQGIDHSENEQTEKIDEIEEYLECRYICDQDGMWRLLGYEIHYHWPPVERMPVHLP
LMNMVKLTKDTKLKNIIENPDNQRTMLTEWFMANQLHEEARNLTYCEFPQKWKWDKKERKWVKRQHGFKIARLYYVKPTE
GERFYLRMLLMIVKGAKNYEDIRTYNGITYKTFKETCAARGLLMDDNEWYKTFDEAASWATSPQLRSLFIILLLYCNLED
ERKFFETNWAKMVDDIKFQLISKYHPIKYNPTDIELKDILIEQIEYLLSKSGISIDKFNLPQMTVRYKLDSTNTLIQDEL
NYNANDLEEQANKLYLQLNDDQKKAFHLIVNSVINKESNFFFVSGHGGTGKTFLWNTIVSFLRAKKEIVLTVASSGVASL
LLPNGRTAHSRFRIPVDIDELSLCDIKHGTKLAELLIETSLIIWDEALMTNRQCFEALDRTLRDILSEKYINAIDKPFGG
KVVVLGGDPKQILPVIENASKLEIINASIVKSYLWGYVKKIFLFENMRLQKTKSNTLEYKEINDFNNWILDIGNGKINTK
QSTAQNEDTDTTIIQVPENLLINTGENKLEELVKFTYPDFKNSFFNPNYLKNRAILATTNEIVDEVNNYILSLVPNQEKE
YYSADTLSQCMDTTNDADILYPVEYLNSLNANNFPTHVLKLKVGVPIILLRNLNQNLGLCNGTRLIITNLGDNIIEGIII
TGTHIGEKAYIPRINLTTRGNQWPFTLCRRQFPIKVCYSMTINKXQGQTLSNVGLYLKKPVFTHGQLYVAISRVSNSKGL
KILIENEDGTCATQTKNIVYREILDXLDLNMNIIPIAELRPGRYDYMICVRISRIWEFRGTNEDDNIKHLDLVLLDQKGD
AIYAEIPPDAIPLLNQYLQEGNIVYISKITVNNAKPSYRAVGNPYMIKLNKRTCIIEAKDQPMDFPKYTFDLVSFDKLHD
FTSKTDRFLGTKLTFISLHVTIIFYMQCYNQILYSIFADVIGKIIAVSNAAMISTSSSDYRMRRIVKLQDLR
>BEL-643_AA#LTR/Pao 14-5946  [Aedes aegypti]
MSQSDLTSNLSDPEDLDLTTTPCAACHQLSTTNEPMVGCDACSRWFHYRCVGVTEAVKKEKRWFCSESACQDAAKKSKRS
TGKRNTGRSSTKSDQAQGITPEQKLKSMEEEFAKKMEELEYERVFREKEMEFQRALKEKKMQMENELREKELAQEKVLLD
RALEDKTEHFEKMKTMRMSYQKCMDGLDEEMLHMRKPKPELFGNEARKTIQPGTSNEKQHPVRKLNMQGGGQNADSKGIQ
PSKMQNQANPSNGGEECYDEDDEDEEIEEEAADGEAVERADEEDYQGEEVADVIGAVGGHNVDPYGLGQQRIGPTKSQLA
ARSAVSKRLPVFTGKSEEWPLFYGTYVASSQACGFSDVENLVRLQDSLKGPALESVRGQLILPKSVPKIIEKLRQLYGRP
ELILQSHLERIRKLEPPKPEKLASFVPFGNAIEQLCEHLEAAGLRQHMINPILIQDLVDKLPATDKREWVRFKRTKRQVT
LRTFTDFVSRIVEEACEANVCMDQKQEPKIMRGNRLGSGTTKGRNMEKGMLLNHDASNSTTGAPAERTTLKACKACQRND
HRLRFCEDFRRMTYADRMKIVTRWKLCNVCLNDHGNATCKFKIRCDVSGCQQRHNSLLHPVGGVIGTSAHIRTTSSILFR
ILPVRLFCGEKTITVLAFLDEGASVTLIERQFVDQLGIVGVPERLTITWTADISREEKGAKRVCVWTSGIGNNEQLLLNN
VYTVENLRLPMQSLDAAVLSEQYKHLKNLPITSYSDARPGMMIGLNNLHSFAPIEVKHGAPGEPIAVRCKLGWTVYGPRK
EGASSQNAVLGFHVGVSNEDLHDLIKTHYALEESVMGVKMESPEDERALDILRRTTKRSGNRFETGLLWKSDQVSFPNSY
PMAVKRLIQLERKLGQKPLLYENVRKQILEYQQKGYAHLASEEELNATDPNKVWYLPLNVVLNPRKPDKIRLVWDAAATV
NGVSLNSQLLTGPDLLTPLISVVTRFREHRIAFGADIREMYHQLRIIEADKQAQRFVFRMSKEGPINIYVMDVATFGSTC
SPCSAQYVKNQNALEYAEEYPAAAAAIIDGHYVDDYFDSVDTIDEAIERAKEVSFVHAQGGFELRNWVSNSPDVLRSLGE
VTETKPIHLGRVKETGSERVLGIIWNPDHDTFSFSSEHREHLQVYLSGIKMPTKRIVLSCVMGFFDPLGLLAVFTVHGKI
LVQDLWRTGCAWDDTVNEDCWKKWKRWIGLLPEVEAIRIQRCYFGEVPWSSVESVELHIFTDASELAYGCVGYLRTVVEG
FVRCCLIMSRSKVAPLKRQSIPRLELMGAVMGARMLHSIISTHSIKFQRYVLWSDSQTVLSWISSDQHKFKQFVAFRIGE
VLELTRTTDWRWIPSKLNAADALTKWGSGPPLESDGSWFTGPRFLLDPEEKWPSQAEPAEKTEEETKEETRAFILYHRAS
LVEEVIDSERFSQWTRLLRSTATVLRFIDNCKRKKTGQPLLTSKATVNQLSMIRAKRLTICQPLKQEELVQAENVLWRLV
QSQSFADEVAILLKNNARSANQPPISLEKSSMLYKLTPVLDANGVIRMGGRMEASRVLPFDMKYPIILSRTHDVTRKLIL
HYHERFGHAYQETVVNELRQRFHIPNLRATIGHVVRGCIKCKVMRSRPRVPMMGPLPVQRISPQLRPFCAVGVDYLGPIE
VTVGRRSEKRWIALFTCLTVRAVHLEIAYSLSSQSCLMAIRRFICRRGRPEEFFSDNGTNFTGASKELLKQIDGDCAEAV
TSSATKWNFNPPGAPHMGGIWERMVKSVKEAMTVLNDGRKLTDEILTTTMSEAEDMINTRPLTYRSLEPAETEAITPNHF
LRGAVRGVDVNQDGPTELAEALRNMYKRSQYLADQMWERWYKEYLPTINQRTKWFDDPKALQIGDLVFVMDGKHRKNWTR
GVVEEVFAGKDGRIRQANVRTSKGVYRRATANLAVLEIQDGKFGSSVMPEPMFTGWG
>BEL-614_AA#LTR/Pao 1570-6882  [Aedes aegypti]
MAPTKKSPAKKTPNLKQLMTKLKQIEAAFHDIRRFSERIQECTSTTQILLRLEKIDELWEKYGATLVDIESHEDFDDIEE
DGDPLDKQRQEFSDSYYEVKSVLTDQVRERQEPASLNQSIRGDPQTSATFDHVRLPQIKLQTFNGEIDEWLSFRDLFSSL
IHWKADLPDVEKLHYLKGCLQGEPKTLIDSLQITAANYQVAWGMLTKRYNNSKLLKKRQIQSLLTLPVIAKESASELHSL
VENFERIVQTLDQIIQPGDYKDLLLVNLLTTRLDPSTRRSWEEFSSTKEQDTLKELTEFLQRRVRILESLPNKTSEVNKP
SNQPPSRQRNSAVKNSFNTVQASGGRCFACTGNHLLFQCGTFQRMSVTDRDSLLRSNSLCRNCFRPGHQAKDCQSKYSCR
NCKGRHHTLVCFKPERDSGARAATKNSNVAKEAQQSTSTSTQSNSNPPQVANMATTDSLVAGSVHQCSSKVLLATAVIVV
EDNDGNRIPARALLDSGSESNFITERLSQRLKVSRSKVDISVLGIGQAVTKVKQRIVVTIRSRLSEFSRQMGFLVLPKVT
ANLPTANINIAGWTIPKGVKLADPSFCVSSDVDLVLGIEAFFDFFESSRKISLGERLPSLHDSVFGWIISGGFNEEHQGL
HINCNISTTDRLEDLLARFWSMEEVDSTNNYSPEETRCETIFSSTVQRTADGRYSVALPKDENVISRLGESKEIAFRRFL
GTERRLTRDANLREQYVAFMDEYLTLGHMRKIEYDPEPTKRCFLPHHPVVKEASTTTKVRVVFDASCKTAAGLSLNDALL
VGPVIQQDLRSIILRCCTKQILLVADVEKMFRQILVHHEDRPYQSILWRPSPLEEVGVYELNTVTYGTKPAPFLATRTLN
QLALDEGDRYPLAVKAITEDTYMDDVITGCDNLEEAKNLQNQLDGMTKGGGFRLRKWASNCAEVLQGISEDNLAIRPVDG
INLDPDSAVKALGLTWLPGSDTFRFQFDVPPVDSDEVLTKRKVLSIIATLFDPLGFIGATTTAAKVFMQLLWTLEGENGK
KLDWDQALPLTVGESWRKLYIQLPILNEIRIDRCVIVPNAVSIEIHCFSDASKKAYGACLYIRSQGQAGNVKVQLLSSKS
KVAPIKSQSIPRLELCGALLAAQLFDKVRQATHLQVRTTFWVDSTCALRWIEATPSTWSIFVANRVAKIQAITEGCEWRH
VAGSENPADLISRGVGPKEIVNNSFWWHGPSWLTADRSNWPTSDLNTIMEGEEERRRTAVVGTASAVADFIDSFISTTNS
YTTLVRRAAIWQRLIRLLRIPEEPITGFLRAEELQIAEFTLIRKVQEEVFSEELRALRKKESVSSKSPLRWYSPYICENG
VLRVGGRLEHSLETYETKHPMILPARHRLTKMIFEYYHLKLLHAGPQLLLATVRQRYWPLGGRNVARQVVQQCVMCFRSK
PRQVRQFMGELPSSRVTVSRPFSKTGVDYFGPVYIRPAPRKTAVKAYGAIFVCMCTKAVHLELVSDLSTERFLQALRRFI
ARRGRCTDLYSDNGTNFVGARNQLQELFRRWKDADHQQDLARFCTNEGINWHFNPPGSPHFGGLWEAAVRSAKHHILRVI
GTNSVSHEDMFTLFAQVEGCLNSRPLTPMSEDPDDLEPLTPAHFLVGSSLQSVPEPDWRLVPTNRLKQYQVVQQRLQHFW
DRWKREYICQLQGRSKRWSPPVKFEIGKLVVIQDKNQPPMRWRMGRIIDVHPGTDGIIRVVTLKTTSGELKRAVENVCVL
PVPANENLVE
>BEL-613_AA#LTR/Pao 38-5635 via tfasty with BEL-635_AA, 2 frameshifts and 1 stopcodon. [Aedes aegypti]
MAEGGNDSQAYRSCAACDRPDSFDDMVACDSCQIWCHYSCAKVGADVKNREWYCSTCEPLMRAKTVQIPKQSKEMWITQS
KTGDRASNENLKLTVPEKDAKKSGKSVREARRQRKRKRRLVIKAVVPDVNVPHSRRNDELPLDNTSKPRVKNAPTESGIV
PDLRHQLASMDFNRAAENAVPNEEPSSHASNFRTHHESRSQDPPRNRPVENLLETELNDSHLHTRGGRQYVEEYDGPTNR
QLAARQVMGKDLPPFSGRPEEWPLWFSNFQRSTTTCGFSDDENLIRLQRCLKGEALETVRGKLLCPSSVPHVIRTLEMRY
GRPSTLIRVMTERIRQLPSPRMNDLNSIIEFGLAVNSLVEHLQNSAQVSHLNNPSLLHDLVTKLPVDYRLKWAAYKSSLR
EPNLTAFGNFMSTMVELAYEVADDVPSEKSKPKERAFLHAHSESPSSKxFSPNEHVSKKCCVVCHEEGHKVGGCPTFKRM
DMDERYKVVQQNGLCRTCLNQHGRWPCKTWNGCEFGDCRLRHHTLLHSISGSSNVAILNNHMGALQSINGPLFRIMPVTL
YGNGCQINVFAFIDEGSQLTLLEDVVAKQLGIDGPTEPLGLQWTGNIKRNEAKSQRISMEVSGTGSTKRFELSDARTVGG
LLLPSQSMRYEELAKRYPHLRGLPLQDYANVSPKILIGLDNLKLTVPLKVREGGWKDPIAARSRLGWSIYGCSQAPASSV
ICGFHFGGWTDPDRELNDLVRNFFSIEDAGVTSPQKILESEEDKRARMLLETTTRRVATGFETGLLWKTDDVHFPESFGM
AARRLRALESKLSKDPAMYENVRLQIHQYLEKGYAHIASEQELAQVPPDQTWYLPLGVHRNPKKPEKIRLTWDGRASVQG
VSFNSALLKGPDMLSSLPSVLCHFRQYRYALTGDIKEMFHRIRIREEDRQFQRFLWRNAPHDPPKIYVMDVATFGSTSSP
CSAQYVKNLNASEFTEKCPRAVYAIHHYHYVDDYLDSFSSRDEAITVGRQVKMIHSEGGFELRNFLSNDAQISARVGEES
TENDKSLSLDGAESVLGMRWVPICDCFTYDLTMRSDLADIMKDGRIPTKREVLRVVMSLFDPLGLIAFYVVHGKILMQEI
WVSGVHWDDPISQQLYDRWIQWCRLLPQLSSIRIPRYYFPKAESEVYRSLQVHVFVDASESAYSSVAYFRVESQHGPLVA
LVGAKTKVAPLKMLTIPRLELQAAVLGTRLLNNVISMHGLPVVQRFLWTDSATVLAWLHSEQRRYHQYVGFRIGEILSTT
EVGEWRWIPSKLNVADVATKWGSGPQIDSTNRWFTGPEFLQLPETHWPQKIKLQLSTDEELRSCNVHLPAMIQFVDVARF
SKWERLLRSVAYVHRFVNNIRRSQRGELLEVGALIHDELKSAEESLWRQAQREFYGAEIELLQRTRGRLDACHVGVPKSS
NIYKLSPFIDADGILRKRSRLGAAFWLPYDAKNPIILPREHRISLLLTDFFHRRFRHANRETIVNEMRQRYEISKLRSLI
ARVSRDCMECRVHHTVPRSPPMAPLPKVRLTPYVRPFTFVGIDYFGPVLVKVGRSNSKRWIALFTCLTIRAVHLEVVHNL
TTESCVMAVRRFVSRRGSPAEIYSDNGTNFHGADNQLKREIEERNYRMATVFTNSTTRWRFNPPGAPHMGGVWERMVRSV
KAAIGTILETQRRPDDEVLETVMIDAEAMINCRPLTYIPLEYAEQEALTPNHFLLGSSSGIKQLPVEPVDFRSTLRSGWK
LAQHLTDGFWRRWLKEYLPVISRRSKWFDEVRDLEVGDLVLVVEEAVRNQWLRGKVERVVCGRDGRTRQAWVRTKNGVLR
RPVVKLALLDVMDERKPVQGNALRAG
>BEL-627_AA#LTR/Pao 1312-6654  [Aedes aegypti]
MIAMKPDVKKSPSMRALTARLKEIQLSFGDIDRFAQLFKETTTSTEIEIRLSKLDEFWESFSEALVDIFSHDDYNPDSTS
LERERIEFSDRYYQLKSFLSDKLKDRQRPQELENSIRGGDASAHGNMDHVRLPQITLQPFNGNIDEWLSFRDLFTSLIHW
KAELPEVEKFHYLKGCLQGEPRALIDPLPITKANYQVAWDMLLKRYNNSKQLKKRQVQALFKLPTLAKESGSELHILLES
FERIVQTLDQVIQPVDYKDLLLVNILTTRLDPVTRRGWEEVSATKEQDTLEDLREFLQRRIQVLDCLPAKSTDTRGVTSI
PQQSKSKSQPMKTSYSSTQAPRTRCVVCSSDHFLFHCKEFQRLAVTDRDALLKSNGLCRNCFRPGHLARDCPSKYSCKNC
RGRHHTLVCFKSEREKDALVAAVAGSTKPSTSQNHQESSSSSSVQVSNIASTEPVVSATSHQQSGQVLLATAVVLIEDDS
GNRLPARALLDSGSESNFITERLSQQMKVCRDRVDISVLGIGQTGTKVKHRIHAVIRSRLSTFAREMDFLVLPKVTVNLP
TTTTNTDNWAFPSGIQLADPAFFERNGVDLVLGIEHFFDFFQTGRRISLGVGNPTLNESVFGWIVSGGISAPNRSLQISC
NVSTMDDLDALISRFWSCEEVETGKALSLEEKRCEDNFSRTVRRGSDGRYTVSLPKQDDGISRLGDSRDIAYRRLQGTER
RLARDPLLRQQYHDFMEEYAKLGHMRLVKGSELETIKRCYLPHHPVIKEASTTTKVRVVFDASCKTATGASLNDILLTGP
IVQEDLRSIILRSRTKQIMLVSDVEKMFRQIYVDTKDRPLQSILWRNSPSDIALTYELNTVTYGTKPAPFLATRTLQQLA
FDEEKNFPLAASAATDDTYMDDVITGADNAEMAIEMRKQLDEMSSSGGFRLRKWASNCPAVLEGVAEEDRAIRTSEGIVL
DPDPSIRTLGLTWMPGTDTLRFQFAIPSLIPDKPLTKRYVLSVIASLFDPLGLLGAAITSAKIFMQLLWTLHDDHNQRLG
WDQPLPSTVGESWRRLHVQLPLFNEIRINRCVIIPDAALIELHCFSDASEKAYGACLYVRSENLAGEVLVRLLTSKSKVA
PLKCQTIPRLELCGALLAAQLFEKAAQSIRFTGNSYFWTDSTCVLRWIVATPTTWTTFVANRVAKIQSATQNSRWSHVPG
VQNPADLISRGISPENIVKNTLWWQGPSWLQEKEENWPLLPEGLSAGAEDEERRRTVVVTASSTVSEFYQAYFEKISSYN
DLVRRLAYWLRFMRILQTPKEERRNYSFLSTMELKQAENTLVRLVQREFFVTEWKALSSKTDVPRGSPLRWFNPFIDEDN
LIRLGGRLKHCMESEEAKHPVVLPARHHFTRLLLRHYHERLIHAGPQLMLSVVRLRFWPLGGRSVVKQIVHQCLKCFRTK
PKTVQQLMGDLPTSRVTVSRPFLRTGVDYFGPLYVRPAPRRPAVKAYVAIFICMSTKAVHMELVSDLSTDRFLQALRRFI
SRRGRCTDMFSDNGTNFVGARNKMQEVLKMLQDCNYHESITRELAKEGIQWHFNPPSAPHFGGLWESAVRSAKHHLVKVI
GDTPVTPEDMCTLLAQVEACLNSRPLTPLSDDPNDLQPLTPAHFLIGESLHALPEPDFTSILPNRLNLLQLTQRRLQDFW
KRWKREYLCQLQGRAKRWKSAIPIDVGTLVVIHDDNLPPLRWKMGRITQVHPGDDGTVRVVTLKTATGLLTRPVEKICIL
PLPIDDENNELEPVTITKSK
>BEL-640_AA#LTR/Pao 20-5933 via tfasty with BEL-612_AA, 3 frameshifts and 2 stopcodons. [Aedes aegypti]
MPKSLDLQPPQVDEVSCITCNRLDVTGNFVQCDACDAWCHFSCAGVDASVSERVWVCAKCRAAPSISGKSGHSSKTGSSL
ARELERLKQQQEIELKRANLLLQMKFLDQQQELLNKAATTDETKDRSSNIDQEANTQRMKDWVNHTIGDEEEGAVGGLSQ
QAASPTDQGNQQLHPERPDATKQVPAASLAIATSTDRMPTHTDVAELRAQLETCIRRMEEGFHVNQQTKPQPPPLTLPST
MQPGPSTGALPKTYPHQMDQAGKRPAISYAQNKNSTSFFDISPPANNTRNPPSHFESLPVGTYSNPYDRVPNMNRSHSTR
QELPPVIPPRVTHAEPQLGPNAQQLVARQSLARDLPVFSGDPAEWPIFISSYNYTTAACGYTDGENMIRLQRRLRGSALE
SVRSRLVIPSTVPQVINALQMRYGRPELLINALLQKVRSIPAPRADRLEGLVEYGTAIQALCDHIEAANELSHLANPTLL
QELVAKLPSDQKMMWAGFRRGVNNVDLRTFCNYMQQVVEDATSVLSFESEERRHIGKEHGRERMKQKRFLNSHTSGREGT
FEVPAPKPTDKIECVSCGKLGHRIRECLEFKSLSVDNRWRKIRSLGVCQNCLFRHGRRSCRMNTRCGTDGCQHKHHPLLH
SVQRPSNAISTQLAENHTHRRMTSSILFRIIPVTLYGDTGRVNTFAFFDEGSSVTMVEQDLMTKLGVTGSPAPLCLRWTA
NTCRTEKNSQIVSISISGVDKQQKYKLVGAQTVESLNLPKQSFHYDEAVKRFDYLKNLPLRSYQNATPGILIGVDNLHLA
VPLKIQEGDVRGPVAAKTRLGWCVYGQQREGDREAYSFHVCECTPNETLHDTVKTFFAVEEVGSSKPILSIEDQRALQLL
QNTTRRVGERYETGLLWRTDYVELPDSYPMAVSRLKCLEHRMEKDSSLKLKIHQKVQEYVDKGYAHVATEDEIANADPRR
VWFLPLGAVTNPKKPNKVRIIWDAAAKVDGSSLNSHLIKGPDQLTALPSVLSRFRQFGIAVSADIQEMFHQILIKPEDKH
SQRFLFRFDTEQPPSQYVMDVATFGATCSPASAQFVKNLNAQEHSYQYPQAAQRIVDNHYVDDYLDSFEDEDEAKQITEQ
VRLVHRNGGFNLRNWNANSDAVLQYLDEPAVNGDKNINLINKEHTERVLGMLWVTKTDELRFATQMSQEVCALIETSTRP
TKRQVLRCVMTLFDPLGLLATFLIHGKVLIQELWKTGIDWDEKVTDDQFIRWRDWVQMIQFIDMIRIPRCYFSSATQQTY
ENAQLHVFVDASPVAYCCVVYIRVTDQEGYGRCSLAAAKAKVAPLKPMSVPRLELQGCVLGVRMLKFVEENHSISFSKRF
LWTDSTTALSWIKSDPSNFRPFVAHRIVEIQDSTSVDEWNYVPSLYNPADEGTKWGEGPYFSHESKWFIGPRFLTYSEEY
WPSMPTVSIEDKEERRISVMNHFSVEPLIHFERFSKWEKLQRTVAYVLRFVSNIKPKxDGWWLQQQELQASEAFIFRQVQ
WTFFPEEMAMLTQKTAMKDNLQTIPRTSKLYQLVPTLDERGFMRQNGRIGAANNASYNMRYPVILPKDGIVTMLIVDKYH
GTxKHANPETVEKEIRQNSKSRLRSIVRRYGRQCQYCKLREAQPVIPPMAPLPPARLAAYSRPFSYVGLDCFGPLLVKQG
RTKVKRWIALFTCLTVRAVHLEVVNSLTTSSCVSAVRRFIGRRGAPIEFYSDNGTNFQGAERLLREQIEQELSSTFTSAR
TKWFFIPPGATHMGGAWERMVQSVNAAMGEAYGDGKLDEEGLWTLVLQAESVENSRPLTYLPLDSEESEASTPNQFLLGS
SSGVKEPGRDIHDQPRALQNTFVDIQGQLNSFRARWLREYLPVIRRQPKWFGEAAREIKEGDLVLIAEDGKRCQWPRGRV
QNVIRGPDGKIRQAILRTANAVLRRPVTKIALLDVGDSSAVSTDVKMHPAE
>BEL-629_AA#LTR/Pao 34-6080 via tfasty with BEL-67_CQ, 2 frameshifts and 1 stopcodon. [Aedes aegypti]
MPRRSRRRNXVPEESIQQTCLLCNLPDSSDMVSCDNCAQWFHFECVGVNADVANRSWSCPECSPATDPAPQLPQSSTPSA
SNSGEPHIQSSSPPPPAMPTAVPPIPTLRMPTPRPRSSQIQNPPPPTPLPRTPLPRTASVPIVETEEVQIVDQEVPDEVN
LVERLPADLRLQFLEQQEAIEQRYLRRRFQLLLGIPTNVNNENSQGVSRNVPANRVVDLPPVXHSSPVCVNRLPPPPMPS
NXNVSPFVPISXXAKGRMIHRSFRXCLMFGRMFRHSLCGRPISNQIFPLLIYLPPFSAPLLRRSHHLRLVCAITCLSSLI
QWPSTQSSFCLRPFAGDSHPAAAEYYPSVLQDDPTTVGGTALLNRSQIAARHAVPKDLPTFSGEPEEWPLFFESFENTTH
LCGFTAEENMVRLRKCLQGKALEAVKCQLLHPSNLDQVIATLKMLFGRPEIIVHSLLQKINSLPAPKADRLGTLVDFALA
VRNMVATVKACELEEHLCNLTLLHSLSERLPPMIRLNWATHRQSLRSATLSEFSDWLYKLAEAASTVTMPQFPGVVDNKP
RRGRKEDGFLNAHTETVPKPKQFDASAGCLVCQGSCAAIEKCKRFLSFSLSARWDALREHKLCRSCLTIHRGPCKSAKIC
GKSGCQYKHHRLLHNDTKGKPETSSSGSQSQAKGHQQASVPVLQDVESCNTHRGGNKSVLFQYIPIVLYNNGIELHTHAF
LDSGSSLTLMEESLAKQLNLKGEKSPLCLRWTADTCRYEKDAIIVSLNVSGTHPGSGQHTLREVYTVKELKLPSQSLPAD
NLADRYSHLRGLPIEPYSNVQPKILIGVSNARVMHVLDDREGKLDEPVAVKTRLGWTVYGTYTSANNSVQPVLPHSFHIC
SHFHGTDESLHEAVKNYFALDSLGISAPKNQLLSKEDERALAMLRKVTTFQDGRYQAGLLWKYDDVRLPNNRSMAMRRHR
CLTKRMEREPRLAETLRAKMEDYERKGYIRKLTQEESRMTGDRTWYLPIFPVFNHNKPGKIRIVFDAAASLGGVSLNSVL
MKGPDQLNALPPVLYKFRERLIGIGGDVAEMFHQIRMRPEDEHSQRILWCASEDTTEPCDYVMQVVTFGATCSPSTALYV
LNENASRFENQYPVAVDAICRRHYVDDMLTSVDTEEEAIQLANDVRYIHLQGGFHMRNWVSNSSAVLEALGENPKPEKSM
EMNAELAMEKVLGMWWNTTSDVFSYKLCTDRNRELLSGAKHPTKRDVLRTLMAIYDPLGLIAHYLMYLKVLLQEIWRAKT
VWDDPIEEKHLEKWLTWLRILPDLESVKIPRCYFRHEARIDQATIELHTFVDSSESGFAAVSYFRFEVYDYVECALIGSK
TRVAPLKFVSIPRLELQAAVVGTRLARSIAEGHSIKIDRRYFWTDARDVMCWLQSDHRRYSQFVAFRVGEILEATDITEW
RWLGTKHNVADDGTKWKFRPDLKPTSRWFTGPPFLWKPKSEWPSSSLNGEETIIELRANFLGHIERTVRTILQAENFSSW
QRMLRVTALVHRFIGNVRHKQKRKPMILGPLTQEELSTAESFLFRQAQADVYGEELAVVAAGNRLKKKSSLFKLNPFIDD
HGVMRISSRLGECDFVDESERHPIVLPRDHPTTRLVVASVHQRYRHQCHETCVNEVRQKFYIPRVRRVCDQVRRSCQQCK
VNNAKPEPPAMGSLPKARVAAFMRPFSYVGVDFFGPFLVLIGRRHEKRWGVIVTCLSTRAIHLELAASLNTSSCILALRN
CFARRGTPIEIRSDRGTKFVGADKELKAAVAGLDQDKLMTEFTTPATSWRFNPPASPHMGGCWERLIQSVKKVLAIIKPQ
RIPTEEVLRSYLIQVENIVNSRPLTHVPVDNCSSPALTPNHFLVGSSSGSKPLVPYTDCPSAVKQSWKGSEALANRFWQR
WVTEYLPTITRRTKWFYPVKPIVVGDVVVVADPELARNCWPKGRVVSVKTSSDGQVRSAVVQTASGFYDRPATKLAVLDI
GANDSKPDQGPTTGG
>DIRS-23_NV_pol#LTR/Ngaro 1172-3127 [Nematostella vectensis]
LSAFRGIKKLINFALGQDIGGVPSVTVASFPDMSFCALNADACSQPLKAAVPDCRGFSTGADYIHDVCFPQPVEAGVLDC
RGFSTAFPRDSQQANDFYLYAHELVFRSGRPNFVVSRLPVPSSLKINTWRTLLYDYDDQMICDFLEFGWPVGFTGDTVPI
FDARTHRGALNFATQVSEHLQREVSLGRVAGPFTDPPFGGGFVTSPLNTVPKRDSEERRVIVDLSWPKGGSVNDGIPCDS
FLGDPFVTCYPTIDDIVEAIVQFGPGCFLYKRDLRQAYRQFPVDPGDYRLLGYIWNGHYYFDTVLTMGLRSAAQACQRAT
SAVAWIHRQQGKVLFNYLDDFIGVSEASSATSDFEQLGTLLSSLGLIESVSKACPPSSLMLCLGVMVDTNSFTLSVSPER
LAELELLLHDWRNRKTARKRELQSLVGKLVFVSKCVRQSRVFISRLLSLLRTVQYNHLHVNLTAEFRKDIIWWCHFLREY
NGVSMIKTTSWSSPGEVFSTDACLVGCGGVCDNEYFHASFPDVVVAQSLDINCLELLTIVVALKLWGQRWTGLRLTVRCD
NQVAVTVLNSGRTRHPFLNSCLREICYLSASYDFEIRAVHLPSVLNCDSDLLSRWGSVASTVKERFLESARCANRRGVTI
SSDHFTFTTPW
>Gypsy-45_NV#LTR/Gypsy 36-3897 via tfasty with Gyps1, 5 frameshifts and 1 stopcodon. [Nematostella vectensis]
MEKIKPPSELDIDSRNLAETWREWQESWELYEISSGLTAKEEKVQVATLYSVLGLKARRVLKTLPNVPESLADRKVKDTL
KVLKEYCMPRTNVTYERYIFRTTTQDDRPFDVFLTELRHKATLCEFGEIKDSLIRDQIVIGTNSPVLRERLLREPELTLT
KTINLCRASEQAIEQSRLITKPEDHQETSNVDSVQARARPSRFDRNQNFCRFCGLQHDRGNCPAYNAICRRCKAKHHYAR
CCSKQISTPAKQVREVELxQDDDYQETYKEIESLYIEEITSPRKKYLEQRLIVGSQPMFFKLDTGAECNVLPKTAVKELP
NCKIEPTNTNLRSFGGNPLKTVGKCYVNTYVQDRGNPVLTEYYIVDHDVKPILGLESCLKLGLIAVSGSATPKGLSINTV
EQPHNLLDQFEDVFTGLGCVDGEYDINLKEGARPTIQPQRNVPLRLVDQLKSTIHDLEKMGVIAKVNEPVDWVSNLVIVE
KKTNHLRLCLDPPDLNEAIVREDYKPPTIEKISSTLNGCKDFTVVDMSSCYRHKKLTDAASLLCTFNTPFGRYRFRRMPF
GIRSASEVAQKMVEEHFGDIEGVLPVYDDIIVSGKTEAEHDKALRKVLERARDRNIRFNKEKIQYRLDKVSYMGEVVSEK
GFTPDPSKVSAIFNMPTPKCKKDLQRLLGMINYLSKYVANMAELTAPLRTLLKKEVAWVWYPEHDAALTKFKSVLTSKPV
LRFYDINLPTTLQVDASKSGLGACLLQNGQPVAYASRAMTSAEQNYAQIEKEMLAIVFGCERFNMYTYGADIEVMSDHKP
LESILRKPLHKVPPRLQRMRLRLQKYHVRVRYVPGKYLYIADTLSRAYDEEAPTQYNDTCMHDEMEHMVHCIIKDLPITD
VKLLQLREITKEDQDMQLLSKYIREGWPQNRQNVPTQVRPFWNVRHDLHLLDGLVMKGHRLVIPVSWRSNILEQVHNGHF
GIEKSKARARAVVYWPGLSADISNLISKCDKCLSLQKKQQKEPMQPREIPLLPWQHIAADIAEYEGKPYLVVIDYYSKYI
EALNGGVTKALMEIFSRHGYPETITADNNPVNSVEMNEYANQCGFKTIYTSPLYSQSNGLAEKAVGIVKSILGKGSNLNE
GLMVYRNTPVSNFPSPNQMIMGRQVRTKLPGHPNALVPRVYNDIRSQLLDRQLKTKEYYDKGSKALPPLKKGDTVRFQKP
GQKTYTPARITRTHDTPRSYVITDQAGREYRRNRRALSKSNEPPLYVQDNVLEDIIDLENETTEVNPAPRRSTRIRSAPP
WHNDYVMGT
>Gypsy-43_GM#LTR/Gypsy 23-4380  [Glycine max]
MAEHGTRRTTTDRLEEAIATLTEKHSDLANKFEAICERLSHMSSSAPTPPSMPRPPVKLDVPRFDGHDPLGWIFKISQFF
DYQGTPEEDRIMVASFYLDGAALSWFQWMFRNGFITSWTALLQAIESRFAPSVYDDPRGALFKLTQRSTVTEYLTEFEKL
ANRITGLSPSVLLSCFISGLSPEIRREVQAFQPSSLPKATALARLQEDKINDRRKHTRIPFNHSPTNTTPSNPQSSQQPR
PKAPFVQRTQEDMAYRREKGLCYNCDEKWNSSHRCKGRVLFFIANSDETSSPESSPSDPSSPLKSEHDHTLLEATQAFDL
TPLQPHISLHAMAGVPATDTFRLYGLINKTRVTILVDSGSTHNFVQPRVAKFLNLPLHDTQPLRVMVGNGSVLDCQQMIP
DTTILIQEHRFVVTLRLLPLSGADVVLGVEWLRTLGPVITDYTDFTMKFTLFGRPIHLRADVQVNTSPVSAHQVRRLIST
KSTSGLFHLSLQPIPSSEMLNTTPHPVPAIDKLLNKYQSLFEAPTGLPPPRQHDHQINLLPSAHPINVRPYRYPYSQKTE
IEKQVSALLDSGLIQPSRSPFSSPVLLVKKKDGTWRMCVDYRALNSITVRDRFPLPTIDELLDELGQASWFSKLDLRQGF
HQILMAEADVPKTAFRTHEGHYEYRVMPFGLCNAPSTFQAAMNTLLRPFLRKFTAVFFDDILIYSASLQDHLQHLECVFR
SLSQAKYFLKRSKCLFGQRQLDYLGHVISGTGVQPDPSKVQVILDWPRPSSPRDLRAFLGLTGFYRKFVRGYASIAAPLT
QLLCKDAFYWNEESQKAFHDLKLALTAAPVLALPDFSLPFSLETDASSYAMGAVLHQRGHPIAFFSKPLGPRLQHASAYV
RELHAIVAAVRKWRQYLLGHRFIIYTDHRSIRELISQTIQTPEQQFYLTKLLGFDYDIQYKAGNSNVVADSLSRISNSAQ
GQCLILSVPHPEFLQQLKQSLLANPDFRRHREAIQATPTDHPDFSISGDFVLFKGAIWINEQNPFIPALLHEYHASPLAG
HFGVKKTLHRLRPNFQWTNMLRDIKTFVRNCHTCQQVKPVTRKSAGLLHPIPIPSTIWEDLSMDFVTHLPSSNGFTTILV
VVDRFSKGVHLGALPAHYTAFKVANLFLNIVCKLHGFPRSIISDRDPIFISSFWRELFRLSGTTLRMSTAYHPQSDGQTE
VMNRTIEQYLRSFVHHNPANWFKFLALAEWSYNTSQHSGTDFTPYEVTYGKPPPAISNYIKGSSRNDAVDTMLATRDAIH
ATLRRKLLKAQENMKLFADKSRRDVQYEVGQLVYVRLRPHRQHSLRDQTSSKLTKRYFGPFPILERIGTVAYRLQLPEAS
KIHPVFHCSMLRPHHGPLDLPVSTLPPDAVQNQPIMKPLTILDSRMDSSTQPPTRLVLVQWEGLTPEDSSWEVWDDIRRS
HHLEDKVIFAGRG
>Gypsy-47_GM#LTR/Gypsy 23-4348  [Glycine max]
MAEATRSRVSADRLEDAIAKLLASQLAMNAKIDDLLQRITHIETTHQQPQASPSSSAGQTPIATGSTHRLKLDVPRFDGS
DPTGWTFKITQFFEYHNTSDHERMTIASFYMEGAALAWFQWMHRNAQLSSWSAFLHALHTRFASSTYEDPMGLLCKLQQR
SSVNSYLTEFESLANQIVGIPAQFVLSCFVSGLSPAIRREVQVSQPISLVQAVAYARLHEEKLLDARISSSQRFPTSTIP
SRSTSTNSTAPLLPTPQKTLNPAIPFKRLSPEELARRREKGLCFHCDEKFSRGHKCSSSLFLLIADDDDMIPDAGSNLEV
PPEPPELVLESTPAQLSLHALSGHSAPETLRMKGIIKDFHVNILIDGGSTHNFLHHQVVTALKLSTQDIVPLRVTVGNGD
EIRCQQRCEGVTVQIQRHSFTIDFHILPLGGADVVLGVQWLKTLGPILTDYTSLNMKFIMEGKLVELKGDREKDIEQVTP
SQLRRLLHMNPASSLFHIRLENQTPTQATTHIIPEIAALITKYSSLFQPPTTLPPSRTTDHTITLLPNTTPVNVKPYRYP
YFQKQEIEEQVNAMLEKGFIRPSSSPFSSPVLLVKKKDGGWRFCVDYRALNAVTVRDRFPIPTVDELLDELGGARWFSKL
DLMHGYHQILMRETDISKTAFRTHQGHYEFRVMPFGLCNAPSSFQSTMNELFRPHLRKYIIVFFDDILIYSRTISDHLLH
LESAFRILVAGQFSLKFSKCMFAQEKLEYLGHIVAGEGVRPVPEKLQTIQEWPVPRTPKALRGFLGLAGFYRRFIKGYST
LAAPLTKLLCHTQFQWTTAAANAFQKLKEALMAALVLALPNFQIPFIVETDASGSGMGVVLVQEGHPISFFSKQFCSKLM
NASTYVRELAAITAAVKKWRQYLLGHKFIIVTNHRSLRELMNQTVQTPEQHRYLARLLGYDFTIQYRSGRTNIVADALSR
IHEESPSSASLSLISMPQFDFLEDLRQDIATNPAFMELFRKIRNNPEAHPDYTITNGLILHKGRIWIPSDSSFTKLLLEE
FHKTPTGGHMGVQKTLHRLHENFTWDSMRTDTRAFIAGCLTCQYTKYDNKKSAGLLNPLPIPVQPWDDLSMDFIVGLPTY
KGHTCIFVVVDRFSKGLRLGMLPTQHNARTVANLFMDIVGRLHGMPRSIVSDRDPLFISRFWKELFSLSGTKLRLSSAYH
PQSDGQTEVANRIIEQYLRAFVHQNPSRWGHYLLWAEWSYNTSCHSATGVTPFEVTFGKKPPNFPHYITGTAKVDAVDDM
LSQREKVFALLRRKLTKAQARMKEVADKRRRELEFAVGDWVLVKLRPRRQISVTETTYSKLTKMYYGPFQITARMGKVAY
QLQLPPHSRIHNVFHVSLLKPYVPGESSHVSTELPPAAVDNDPVVAPLAIIASKLIPAESGPTRMVLVQWKDLPLEEASW
EE
>Gypsy-51_BG_pol#LTR/Gypsy 1468-5403 Gypsy-7_BG_pol very similar. [Blumeria graminis]
GKRLSLGEVAFLENNTYRVNGIDLENLFGGRPLVIDCSLETKNNSQFPISALIDTGANGYAFADRKQLRDWYRNSKIKMT
RYNLRHPLPIRGFDGGSSRPLRHAYVMTLTIDSHRVNMPFFATTLGNKNNVILGRQWLAYHDVLPDCVRHRLWWPEDRND
HQWDANRRDRLIELPPLEINKPPAKKSPRFIPKQILKRPEMVAEAPATPSIILTPRPTLQERQEVYDKKKEDLGLDEMDT
PTLSAVEVGTIEGEDQCWFVEMETACDGTDIAHIAELTEEEERTQLLAQLPPEYHDLAHVFSKRRANELPPHREFDHKIN
LDSEPELKQAPLYKMNQKELDTVHAYIEENLANGFIEPSDSPFNSPVLFVKKKNGDLRFCVDYRKLNAHTRKDRYPLPLI
GETLAKMAGSKKFTILDVIHAFNRIRMHPDSVGWTTFRTRFGQYRYRVLPFGLSGGPATFQRYINSVLGNLLARYVSAYM
DDVCVHSKDKSKHVAEVREVLQRLDRAGLQVDIKKCRFNQKSVNFLGFIVNTSGLLPDPKKLESIRAWERPTSKTAIQSF
LGFCNYYRNFIENFSRIAKPLYNLTAIPKGQLFQWTEQAEEAFLALKEKLVSPPILLYFDQKKPSRVETDCSDLATGGVL
SQLQEDGVWHPVAFHSRTLTGPEANYEIHDKELLAIIQCLKEWRAELTSAWEPFVILTDHRVLEYFGQKQLLNDRQIRWA
EVLSQFSFDLQYRPGKENILADALSRKKELTPTQKAAKELERTKILLPQKKVMLPHDSKVLAPIDEDLDTIDRTFMANRA
DPDLEDLRRQARQREEPYSLEPTGLVLHKGRVVVSAKDNLRTQVLKMIHESTSTAHPGRNKMRKLIGDRYWWPRYAADIE
RYVKNCHVCRRSHKPRDKTPGLLQPLAIPERTWDDISMDFHDVGVPDKRGFNNIWVVVDRLSKRQISIPTTKSATAKTAA
DLFYRYVWRFRGAPKTITSDRGPQFISDFMDELSRLARVKLKLSTAEHPQTDGQTEIINQIIDQRLRPFVNFHQDDWAEL
LPALDAAAAAIPNESTGLSPSMIDYGYEMRLEFDWNQRLEPRTPREKLNRDEAAEWLKRISSALDYAKESIKRSQEQQRV
QANKHRREVDFDVGDKVYIRRGAWRTTRPSDKLENPMVGPYRIIAKEGHSFRVQLPASWKIHPVFSPDRLRKDPDNPLPG
QANPEPPAEEVNGELEWEIEKVLDARLYRNRLQYKVQWEGWDADEEWYPAANFRNAPLILERFHNEHPELPGPPRRLATW
LDDAAHDRFSEEHPEDNMVTNQGRDNRRRRRN
>Gypsy-49_BG_pol#LTR/Gypsy 1216-4803 [Blumeria graminis]
NKKLGHLEDKRQSFSKIWAAIHSINFNLGNKPPLVLNTIINKNISSSSMVDSGATSLFVDSYFLEKNNLIPKKKKYPETL
KVVDGRESVSGAITHEIELSLQLGDHSECALFQVTKLSDYPIILGKAWLNRHDPTIHWSSNSILFTSEFCQSHCLHNRDS
DVSICSVTLPVLNKLAKRENLEVFAVSVREIEEHLEKSEKSESEECKELLQKIPPEFHDLLPLFTRKEADKLPPHRYVDH
SIELEEGKKPPFGPLYNMSNLELRALWNYLEENLKKKFIRPSSSSSASPVLFVRKPGGGLRFCVDYRGLNSLTKKNRYPL
PLIDETLRQLQAAKIFTRLDLRGAYNLIRIREGDEHLTAFRTRYGLYEYLVMPFGLTNAPATCQQYVNDTLRQYLDRFCV
VYLDDILIYSQNLEEHRHHVRQILESLLQAGLYVKGEKCEFFTTSTKFLGFVISTSGISMDLAKVSTILEWNPPTCVKEL
QSFLGFANFYRRFIEGYSQKVKPLTKLLCKNSTFEWCNEQQETFEALKQKFCSAPILRHFEPNLETILETDASDFAISGI
LSQYFQHSGKKMLHPIAYFSRNLTPAERNYGIGDKELLAIVASLVQFRPYVVNLSQPLLILTDHSNLTTFASKQILNRRQ
ARWANELSELNFKIVYRPGSKNQRADVLTRRSGDLPVENEELQPATILGPEKFEISALEAHFEAEIKENLKLDSFGQSIF
KALDQGLTRHLGVDLATCRKNDDGLLEVNGLIYIPQNLEFQQRIISSRHSHPAAGHPGQAATFELISRDFWWPGIRKTIA
RYIRNCDTCQRIKPVRHAPYGYIKPLEIPQRRWESVSLDLITGLPFSNSFDSVLVVVDRLTKMAHFVPCNTDLDSTNFAR
LYRDSIFRLHGLPSSVISDRGSIFTSGYTKELSKILSIESRLSTAFHPQTDGQTERVNAILEQYLRGYISYQQDNWVEYL
SLAEFAYNNSISATTKVTPFFANYGFNPRFEILRKDSNNLSPLLPELQQFRVKLEKLEQHLRQEIRLAQETYVEHANKHR
ISPPVFEIGSSVWLLRKNIRTTRPSAKLDYKRLGPFKIIAKISTHAYKLDLPSTMRIHPVFHVSLLEPVAIDPLPAQKKI
PPPPVEVDGELEFYVEEILDARKTGKSGQLQYLVKWAGDLQPTWEPFEHVRDLEALDKFFARFPKKPRPAARRNSH
>Gypsy-43_BG_pol#LTR/Gypsy 3533-7417 [Blumeria graminis]
FGKLKRRRHDVKVPNSAAYRRISTLKVAKIGIGMSEENRMNSKGDIGRVSPRGDDENMGGGEMADTNVGFRKLVDEGDQK
GIDTIPNGVKEDNGKQLTEKKIGRTWRKILDKKATCTQSEDFNRVPKKHPIDCLATSHQHLPDDGTPNTPRGPDGYPLRR
PVRRTLSTAPDIVIEQWFSESGIHVGPLLTPDLRPRLTRLMYTYRDLNAIELKEMPATDLYVHRCRLQPNCPPWKDFSKR
RQTPQQEYWLVKTIQEGMSCGMYERPVLANHVFSDWNAVAVIVPKEKDPEKRNDPMAEMRITFDYSHVKENMPGSFMELM
TEIHDYLAFPGHECFLQFDIKNAYWSIVLHPQDRFIYAFYVSTLGQVQPTRMPQGTKSAGYTMNEFMLIFLGYIPPLPRE
HQSSGFTGEFPSLLHPFHEGDTASCRNYMDDIFSGFRSPVEALDWMEEHFLPRVEWARIRLSFKKLRLFMTEILALGVTF
KTNGIMETTKTRADRIRKFPPPISGKSDVRKFLGIIQMTRRWVKDFAAISRPLTRLTGNVDFKWESTEQLSFELLRKTCS
DVVETHGLDPYSPIHLYTDVSAFAAGCHITQMQLKKGEHSGRKVEYPLLYDSFLLNKAERNYGTYKRELFGMVSFARKYY
YMLMTDSPSIIWTDHKPLTFFLETPLVYGIYSRWALELGALNVEIRYIEGSKNKVADALSRTIFPDPECEKDHLLDSLGD
IIEDQDGKPKWIWKDGKGGYXELLRLRKIQEDDATNLDSKSVEYSAIRPHKDSFEEQLDALATQMEEKETYSKYQDSEWY
RDVWIALTRASYPSNFDRVQVTRLKRRCNNFEVIGDDLFFRIRGVRKKCVTLQEVSEVIRHAHDKEGHWKHAITMKKLRK
YYWPNMANDVRNYILGCMKCAQHGNAQRTQTQSPTVIDEPNVLWGMDYIGPFPKTAVTMDEALKCMWPQLHKSKFQVTIQ
DPNPLVTQSTNDYGFVNFTHILLVIDYFDRFVWAFPTITDSQDETIRCLAWLISQEGAPVATYQDTGGHFGKRTANFLKA
HSTESISSPVASKKATGMVEKANDILQITMKLITRDPHCWPWRIQQAVFEGNRRQISYLGYSPFEIRRGYQPPSALEQKY
HLPERNVTLDTLKNEIDSFMEISEDNHASAVDLFVQNREIVRDSIIDKTNWRKQVQKERHDRGVRVQTFRPGDYVMLYDG
KSAKKKLHPAYRGPFVVAGHGGSHGKSYLLRQVNGKAIPRTYYGDHLKLFKLRESHLITGREEKVPFYQNLRAGTASHKL
PAAVGNGDSEWSADN
>Gypsy-40_BG_gag#LTR/Gypsy 160-1302 [Blumeria graminis]
MSTQFESALAENNSLKEENLNLRRQLGISAMPSKTPDQTSEVEIIKDPARKNGKLKPNQLPNYDGNRKKYPAWRKAVLSA
LRLDWNTFGYTDQQAFLMIYNCLEGEAQEQAGAYFETGGKNGVESPEDFIEFLDRGNWDLTRITRARTELGKLKMGDNQQ
WNSFFPTWSNKLTEGRGDMWPDETKITMLRGALNKTLLKALASNHLLPQNDFFAWTKIVGQISHQHEELEVQPNWRGSWV
ASESLDQSIINRSHNSPDGRPIGGGWKPPNRHRGIVGEIDAAGDTFMGGINSANVARGANGKPLRAKWKSPEQIQRLQRE
GRCYRCERQGCNTRICRVLPARKPGAVGISASSASLPEIDLRLLMEDEDEYLEMGQYFSEN
>Gypsy-38_BG_pol#LTR/Gypsy 1269-5377 via tfasty with Gypsy-50_BG_pol, 1 frameshift. [Blumeria graminis]
GKRVVSDHSRDQRLESRDNFLFISSIKAEIEGSQRQLLPCTLVQHSNDNSNSVKTDLLPDTGATGKAFIDAVFARNSNFK
IHKLPSSKQLNLVDGTPSSAGNITHSCTFELKMGLHKEKITAFVTSLGDLNLILGKPWLNLHNPYINFSTDILHFNKPFC
SNNCLPPDNPTETVEPAPKPWVAPSSREPQQYFKAVATTEVVEAEIANTRDNPTSVNRDQHEQKVKNRSPSTTSLPKPRR
LGARSFYALASDESVQIFAASLREIDKLTGKSSFTPCSTESLRQEHPSIPTDLHLRGASLDDIRIALQPKVFIDPSSKLP
SQYHDFLPVFDQKEADKLPPHRNCDHRINLLPEKTPPAGPLYSMSIDELKVLRKFLRENLDKGFIRASISPAASPVLFAK
KPGGGLRFCVDYRGLNAITIKNRYPIPLIQETLARLSKAMYYTKLDVIGAFNRIRIAEGDEWMTAFNTRYGLFESLVMPF
GLTNAPATFQARINEVLHPYLDVFCTAYIDDVLVYSESLEDHREHVKTVLKALQEAGLQLDIKKCEFEVTEVAYLGMIIS
TTGVKMDPVKIQSIRDWKPPSTVKDVQAFLGFSNFYRRFIKGFSRIVRPILTLTQKNTTFVWSSLCDSAFEALKKAFTSA
PVLRHFDSSRPTFIETDASDWVSSAILSQKDDNGELHPVAFMSKKFETSECNYEIYDKELLSIVRCFESWRPELQGSEHP
ITVLCDHRNLEYFMSTKQLSRRQVCWSEFLSQFDFIIRYRPGTLSGKPDLLTRRSQDPPQDISDERLQENQVSLLKPHQV
DPIISQIIQKPVEETINSTSSVELTKIEAHTTEISKGLYLALTSVDQSLEEPADVLRSRLIEEAYVQDEWFKRIQKEMTK
IDGIPRSREVELSQCRIESNQLYYKDRLYIPNGKENLRTKLLQEAHDSVETGHPGKNALYEIISRNYWWPRISYDTKQFT
RNCHNCIRNKTSRLRYQGTLKPLPIPIQRWKDISVDFIGELPKSSGFNQIMVVVDRLSKQVHYSACTTRMTAKDLAFLFV
RDVWRLHGLPSTIVSDRGSLFVSEFWRNVCKRLKVSLHLSTAYHPESDGQTEIMNAHLEQFLRLFCDFTQADWADWLPLA
EFSANNTVSTTTGMSPFFANSGQHPRLSFNPPRKIQVGAPASKRKINQAGKLFVTKMEEITNLLRTNMLNAQASQEHQAN
ANRSPAPAYRVGDLVFLDSRNINSARPMKKLDNKFLGPFPVSKVVNSHAYQLNLPVELEKLHRTFHTSLLRPSPTDPLPG
QTQLPPPPITIDENGQKLWAISNILDSRKKNKKFEYLIEWRGTEGETSWEPLKNVVNAKLSILEFHQRFPSKKKPTQKET
LEARKEALSK
>Gypsy-41_DAn_gag#LTR/Gypsy 951-2489  [Drosophila ananassae]
MVLSHSTENLSQTSDTGEHCFICSEIIVYQAQLLSTSCGHIFHRACYNSKVGKSKKCPVCKQELTQSNSASVENLSSDRL
STTSSIMASTSQSLQTRLQTKRMAAVQQSEVPNSDSNNMVQTITNQPQEPTNTAETVPSTLAEAIKAAMIEQTQMIASSL
TDQTNKIIQALSGCLRDSSLAGSANESPSSRQTRAQSGLPXQNPPETRSEPSMGLPTQLPHPNHYEVRPDRISQIMANWK
LRFTGRSSMSAEDFIYRVEALTIQTLEGDFNLTAKYASNLFEGSASEWFWRYHKSVTVLTWPGLCQALRGQFSDDRTDRS
IRSEIEHRKQRHNELFDDFYGVIAALADKLSNPLSEASLVETLRYNLLPEIQHEILYVPTTTLKELRTVVRTREMFLRTV
SKPNPLSTSRPTPRRQVNSLQNPEVAPSSDEDSGQDEYELSVLEVSCWNCSAKGHRYQECLADRKIFCYGCGKADTYKPT
CRTCNPNAQKNYQGRAPQKSARKQLISRATNTE
>Gypsy-43_BG_gag?#LTR/Gypsy 684-3542 [Blumeria graminis]
MNTKMATVNIDFVEAFDGTRTERFFRLLHDAFDESGVEWTPAQFVKAIDRKSRGAALDTLERDARCCQLMKDARDPLKAI
SIEDIRYIELHLLKHFPASEVKKVVPDELLEDLAQYQDEKLEAYSLRAFDILLAFDVTDGTKKSQAENYILKKIINTFGK
GLYNSILRDEVRSSRDWFMCDTLSAATQVVQATSKFLEARAEAEKETTRFRKLDILERLEQGILPQPEYDAYRVSLGKPK
QQIPSPYNSAISRAVRLTPPPQQALLEHKVPAQYNIAQAPLRNQDTIPELFPKDQQLPDPSTSRHPLINGQRVYNGETCC
YKCGQFEGVGVHLGKQCRNQPMSHWEQACIRKLRDPRNSRTIGSFMVEIAQNEKLRKQAISGMQEVNKSSLGYEDRQSQQ
SQPQASSGTGTNEVPIVPRQMTWEDLRRVRGDQIDVNAVQTKKKSKPRKFDAKSTVFTSELPMNYDSSFSDIESDIESEA
NLEAFPVRAKAVVPKGDQDTGRVTRYGGRKRVAVTHSIGSSEDQHANATPESDGRRRKTPAKVRDIAAPKSHRRRKEEPP
VVPPIIEVDQDKKTPDTLSKPDVPRLQKDSQFPGKKVTNGRVLKVVKKNLNALKEIAGRKGCGPLDYTQWARLFRMEISL
LDLLQCSPNFAKHVKKMSTRVNTKREPVKRQKRYQATVETEDELDVLIETALVDFHCMLNRVASAMEYPMLNSISSSNKP
FRVPGVIYINVKGQLVALELPKHICQADQGSDINLISPYLVDYLQLEKLPLAPPGSKPGLQMNTADGNSTSMKSYVKAKI
TVMGITRLVELFVRPDRNIKSKDKNILLGLPWLWSVDAFFGIRESFMLIGDQKFGEVQVFIQGPKLNQDVDQKLLLVPQK
KTSSSHRIENSLEDLTLKKDKISSPSSSKESHLSEEDYDSISSESTDEAETDTTEEITNQYDTEYDSETSSGN
>Gypsy-42_DEl_gag#LTR/Gypsy 641-1948  [Drosophila elegans]
MSVREIEELLDRFQKLNTAESSQQNSSSMALTSEQLKSIIEGAVASALAAQEKSFEKKLQDVQKRLGGVNIGTPEVETYK
DAEIIIGIACCETLDIMKSLPDFEGKNETYVSWRKAAHTAYKVFEKYDGSSKHYQALGILRNKIKGSADMVLSSFDTPLN
FKAIINRLDFTYADKRPIYLIEQEMSTLRQGNMTLLQYYDEVEKKLTLLINKTIMTYDNTVAASLNEKYRADALRVFISG
TRKSLSDVLFSARPTDLPSALALAQEVDANHERYMFASSFARSTEEKHQRAEQRSATTDAKFNPNGKNPHFNRIPPRQPP
RQDPTQPMEVDPSLSRFRQPTQNQQSGPFSRQIQNTYQNIQPNGNNNQGQTIKRPNSSSARYTGPKHQRINHLAVENDPP
NDEYPAVAEEECENIDDDLVEYDEINFLGITPCSHS
>Gypsy-57_DWil_gag#LTR/Gypsy 3594-4802 Following the partial pol CDS [Drosophila willistoni]
MEWNNLVKNLNNSRDKFNRSYNCINKDTVIRIETLKLHINNLIQQYNNIVLKIQLVDDQLTPAHKTQCYNLIQSLNERLT
KISARRSLEIQIPEEPLALAEFDANQLSELNESKPTVDIEQDSDIESLFEEIIPTKMALTVVDFLKLASSLISDYDGKPE
NLQSFLDSLNLVNTLKGDHEQTAISLIKTKLKGHARNLITTEQTIGEIITHLSTTVKGESVEVVSAKLLNLQQRNKTATQ
YTQEVEKLAKDLEGAYISDGVTPTLATKYSTVTAVKAMTKNCTIERVKNIMMGGIFTNMDDAVSKFVNTCTEITGQSNSV
LYYRRGTSYNNRGGRGYNRGRNYNYNNNSNNNNNFHNNNNRGGRRGQNRGRGRGNFNRGYNTGNVRLLQNTSENQQNPLG
NTQ
>Gypsy-170_ZM#LTR/Gypsy 792-5530 [Zea mays]
MAEDANARPPHSPRTVGIIQHFERQVRLHTDALNEDVQVTNERIGQLETAQIVTNNTLTTLERTVAATNTSLAAIIERLD
RMDQVGREGRQQGDDDGHGSIAGTARDDATEYSADTERDDRSIRHRRHQRRDRHGLGGRPPRREVRENDDSLGRIKFSIP
PFDGKYDPDAYLTWELSVDQKFACYDFSDDKKVRAATSEFTDFASIWWHEYQTTHPATIPQTWNALKRIMRSRFVPSYHA
RDLLHKLQQLRQGNKSVEEYYQQLQIGMLRCGLVENEEAAMARFMGGLTREIQDILAYKEYTNVTRLFHLACKAEREVQG
RCLRTNTYAGRNTSWQPRTSAASSNHVFQGDASNRSSTTPSKSAPSRAIETGKGSSQAVAKSSSIASTGRTKDIQCLQCK
GFGHIRRDCPSKRVLIIRENGEYSSASDLDNDTYAMLAAQDAEKENDDEEHIGAEHAEHYESLVVRRVLSAQIIKAEQNQ
RHNLFQTKCVVLERSCRIIIDGGSCNNLASTTMVEKLGLKTLPHPHPYYIQWFNDSGKLKVTRMVRVEFTIGSYHDYIDC
DVVPMQACSMLFGRPWQFDKDTVHHGKTNHYSFMHNEKKLVLHPMSPDAILKDEVARACKEKNKSVHNKNLGAAKELVQH
KSDNSKSAQVRKTEIQLKSACFLASKSDLLELNDVASICYVFICKDALFSLHNIPSTLPSTVTNLLQEYADVFPNXVPPG
LPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINN
ITIRYRHPIPRLDDMLDELSGSMIFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVL
RAFIGRFVVVYFDDILIYSKCLVDHLDHLRAVFNALREARLFGNLDKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSW
PVPTTVTQVRSFLGLAGFYRRFVKDFSTIAGPLHELTKKGAPFSWGKAQEVAFETLKDRLTHTPLLQLPDFSKTFELECD
ASGIGLGGVLLQEGKPVAYFSEKLNGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHLRSQTNLNRRHA
KWVEFIESFPYVIKHKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKQQYVFDADFKDVLLHCKEGRTWNKFVLTDGFV
FRANKLCIPAGSVRILLLQEAHGGGLMGHFGVKKTEDILASHFFWPKMRRDVERFVARCTTCQKAKSRLNSHGLYMPLPV
PSAPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKTDDATHVADLFFREVVRLHGVPNTIVSDRDTKFLSH
FWKTLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKHNIKLWEECLPHIEFAYNRSQHSTTKLCPFKIVYGFV
PRAPIDLIAIPHSEIMNFDASRRAELIIKLHEQTKANIKAMNAKYEEAGSKGRKHITFEPGDLVWVHLRKDRFPDMRKSK
LQPRAAGPFKVLHKINDNAYKVQLPADFGVSSSFNIADLTPYLGENDTFESRTTLLQEGE
>Gypsy-166_DR_pol#LTR/Gypsy 878-4276  [Danio rerio]
GLVPVLWETGSSGCPVSVKSPRSPVVRGILVGTIPCSDTPTYRTSLPASLQFGDVVHSCSALIDSGAEGNFLDSTTAESW
GIPAIPLSSPITVRSLNGLTITSITHSTPSVSLIISGNHREDISLYLFDSPSAPVVLGHPWLTKHNPHVDWSTSSVLSWS
PSCLALCLGPAPCSGSVSHVLQVEAVDLSGVPSEYHDLRQVFSKSRATSLPPHRPYDCAIELLPGSSPPRGRLYSLSRPE
REAMDRYIQESLKADLIRPSSSPAGAGFFFVKKKDGSLRPCIDYRGLNDITVKNRYPLPLMSSAFELLQGAKVFTKLDLR
NAYHLVRIREGDEWKTAFNTPTGHFEYRVLPFGLTNAPAVFQALVNDVLRDMVNRFVFVYLDDILIFSPSKQVHTQHVRQ
VLQRLLENQLYVKAEKCVFHTKSVSFLGHIVSTEGIKADPAKVRAVAEWPIPNSRKALQRFLGFANFYRRFIRNFSSVAA
PLTALTSPKVPFIWNSRAQEAFDVIKSRFITAPVLSLPDPERQFIVEVDASEVGVGAVLSQRSLRDGKVHPCAFFSHRLS
PAERNYDIGNRELLAVRLALGEWRHWLEGAAHPFLVWTDHKNLEYIRSAKRLNSRQARWALFFGRFTFSLSYRPGSKNIK
PDALSRLFDVPGENATPVAILPRGVVVGSLSWDVERRVREAGQGGETPEGCPGGRLFVPIRLRPEVLQWGHESRVACHPG
IRRSLATIQQRFWWPSMAQDTKQFVLACAVCAQNKTSNQPPIGLLQPLPIPSRPWSHIALDFVSGLPPSRGNTVVLTVVD
RFSKAAHFIPLPKLPSAKETAQVVIDQVFRIHGLPMDVVSDRGPQFVSRFWKEFCRQIGASTSLSSGFHPQTNGQTERAN
QDLERTLRCLVSQNPGTWSQQLSWVEYAHNSLPVASTGMSPFHCSVGYQPPLFPAQEPDAAVPSAFAFVRRCRRTWKRAK
EALAQASRRTKAAADRHRTPAPPFVCGQKVWLSTKDLPLRVPSRKLAPRFIGPYQITKVLSPVTVQLKLPCTLGRVHPVF
HVSRVKPVFRSQLNPIGHSPAPPPPRLVDGVPVYTVRRLLDVRRRGRGFQYLVDWEGYGAEERSWIPARDILDQSLIGEF
RRRRGEPPLEAP
>GypsyPi-1c_gag#LTR/Gypsy 73-1059  [Phytophthora infestans]
MDRNDFSHMNDSQFESVRKMAGIFGMEAMQSLVVSTPAEQLERVNAFDAYEQGLIAHVRENLQAPAAGANPPHPKPIRLK
VKPYEGKEGESLHFWVREVELAMDAALISTEQLRVAFALSNLSGRAKRWVYTREATSPGCFTSWAQLCEQLRAAFLPANY
EYRQRSRFLACKQGRRELHEYVQEIRELTASLVGNPLNEHIKMTVFMDGLRVGPARNQLFRVQSSTLEEAIKVALQEEYS
HRQARTPASAWPGSSLSAPGRTSPNGPVPMELGSAEQRDIRCFGCGKMGHFKRDCPAERLRRRSFPKPVLKGRWQKPGSR
GQGNAENQ
>GYVIT1_gagpol#LTR/Gypsy 262-2987 via tfasty with Athila6C_gagpol, 2 frameshifts. [Vitis vinifera]
MPKWIRDSGGRLVKCDTPQKGEFEVILNIMEAAPEDQHSHQGRQDNLNEFRSMRDRMHPPRMSAPSCIVPPTEQLVIRPY
LVPLLPTFHGMESENPYAHIKEFEDVCNTFQEGGASIDLMRLKLFPFTLKDKAKIWLNSLRPRSIRSWTDLQAEFLKKFF
PTHRTNGLKRQISNFSAKENEKFYECWERYMEAINACPHHGFDTWLLVSYFYDGMSSSMKQLLETMCGGDFMSKNPEEAM
DFLSYVADVSRGWDEPTKGEVGKMKSQLNAYNAKAGMYNLKEDDDMKAKLAAMTRRLEELELKRMHEVQAVAEAPVQVKL
CPNCQSFEHLVEECPAISAEREMYRDQANVVGQFRPNNNALYGNTYNSSWRNHPNFSWKARATQYQQPDPPSQQSSSIEQ
IIANLSKVVGDFVGKQEATNARVDQRMDRVDQRMDRMESMLNKRMDGMQNDMNQKFDNIQYSISRLTNLNTLQEKGRFPS
QPNQNPKGVHEVESLEGESSQVKDVKALITLRSGKKIEQPTPKPHVEKEEEIKKGKEMEDKDSEISEEKKESDSTIKAIP
EKELLKEEMLKKSTSPPFPQALQGKRGVRNAAEILEVLRQVKVNIPLLDMIKQVPTYAKFLKDLCTIKRGLTVNKKAFLT
EQVSAILQCKSPLKYKDPGSPTISVMIGGKVVEKALLDLGASVNLLPYSVYKQLGLGELKPTAITLSLADRSVKIPRGVI
EDVLVQVDNFYYPVDFVVLDTNPTVKEANLVPIILGRPFLATSNAIINCRNGLMQLTFGNMTLDLNIFYMSKKQITPEEE
EGPEELCIIDTLVEEHCNQHMQDKLNESLVDIEEGFSESPIGLATLQSWKKIEGILPLFNEEEEAAVEKEIPKLNLNSPL
PVELKYTYLEENNQCPVVISSSQTQSLK
>GypsyPi-1c_p3#LTR/Gypsy 7342-5201 Revers strand ORF [Phytophthora infestans]
MPRGTAKSGAKTRSKAAAGKAQAKSTKPHGKGSALKEAAQVASEAIGSSGDAAVDKRASKRRSPSPSSSDNRPNPRFVER
EFNSDSEDDAESGSTHDAPAGSVGGHNPVPSEHKDDSVQSPASDQGDHSPRTSVRSESPAAKAKDAPKAGGDEEGNPRKR
LSLAEGLARAKAFKAEGAKPSKKRTASKSPLREEKEARRFYRSIFDSSDEEEEKEEEEEEEGAIVEPQEVSNDLDQQQED
CQAAQRVRGGSVAAPVSQGAAINSRGYWPPEESSGADLFLELLVAPRGLGGGHTSRGIYERALVQKEQLFVDNLEAARCV
LLAQHRIPLKDFTTCRKKPETRGGLYPVWGYPWVMPENCLTWSSCEDMFWAWVETLKYSPTELRELHEDQQLSHILDQRD
LRVRFAHLISKRMLPRDILKRAASSAHDERGYGMYSSTVPRSGKKPRTTYEAAAASVPRLRQPSGSKSGAVQSAPTSSRS
GHNLSTSRGAVACRDTVAPGGSAPRGSGLLHSGQAGAEVPSYEYEYSAPPESHSRPSAPTAGPTRDSEVDRLRQRVLVLA
IALGLGTGGNAAAQARSQSELARLAGRLDLVEREVASLHLRVDRRASSSDLNEAFRMIRRIEALLPRPEPPAAHSQTYAY
GAYPAYSAYSAYGAGVRSYGAPPAYGLDRSLAVPTEAWVPAPTTSSTTVTGPRFEELGQGGSVSQQPPAGQSTA
>Gypsy-148_AA#LTR/Gypsy 2395-4467  [Aedes aegypti]
MALLDSGAEISVMNSLDIVNKYNFKLHKSKLKVDTAGDSSYECVGFVNLPITYNNITKVIRIYVVSEFSKKLILGINFWK
AFDIVPAIKGESNQIRTTHLSEIQSNDSLEFSENHFSSENQCIALKFNTFVGALEETMDNEEDLTLDIPTLDFESVPIDT
IETEHSLTEQDRAKLLDAIGQFEVSEENRIGKTALLEHEIKLIPGVELKASPMYRCSPYVQKFVDEEIERMKLMDVIEPC
ESEYASPLLPVKKPNGKFRVCLDSRRVNSATRNDAYPMPHLHEILHRIEHAKYFSVIDLKEAYWQIPLTENSRGLTAFRT
KMGLFRFKVMPFGLKGAPFTMAKLMDLALGCDLQPYVWVYLDDIIIATKTLSHHIQLIKEVAKRLKQANLTISLAKSKFC
RKSVRYLGYIVSEQGISIDMEKVRPILDYQPPKTVKDIRRLLGLANFYQKFIKNYSAITAPITELLKKENKKFLWTAEAE
KALENLKEALISPPILANPDFNELFTIESDASDLAVGAVLTQIQNGEKRVIAYFSKKLNSTRRKYAAVEKECLAVLWAIE
AFRNYVEGTHFKVITDARSLVWLSKVSAEKGSAKLCRWALKLQQFDFSIEYRKGRDNITADCLSRSLNTISTKWEDLEHD
SLKKKISEYPNEFKDFKVIDNNIYKYVKDDSKITDNRFNWKIVPKKIRDFN
>Gypsy-75_NV#LTR/Gypsy 10-2858 via tfasty with Tngr1_pol, 1 frameshift and 1 stopcodon. (fragment) [Nematostella vectensis]
LVGGRPAIKVKLAGEEVECLIDTGSMVSLVTENFYKTKLKNVSGRVQGGGKMLSLRGANGLEIPYLGYLELDITVGEVTI
PKCGVLVLKDTAAIVRQRRKQPGVLGMNVLTKIPKWAEELGGSMSSKEEQKQKKRKLVKVARSKAVWVPPHSVMDIAVTG
TPCGANALVEPLGTTLPGRLRVAATLVDASRPNFTIQVSNPTGRVVRLKKRTCLGSIMPAEATTREQLTFAVGVSEVVVS
CSAATDCLGVSSQTPAGAATTLDERRSPEQSLLDGFPGTEEDRREAQRIFKEYADVFSREGEELGCTSTIQHRIHTEDDI
TVNQRHRRIPPNQFEEVKEHLQVLLDRGVIQPSQIDYASPIVLVRKKSGTLRLCVDYRRLNAKSRREAYPLPRIDESLDA
LGGARYFSTIDLASAYNQVEVHPADRHKTAFTSPMGLFEYNRMPFCLCNAPATFQRLMTNIFRSDILKTLLVSLDDIIVx
SGNVADHLQRLRLVFQKLREHGLKIEPEKCHFFQERVNYLGHVVSAEGVSTDPAKTEAVSQWPTLITLRELRSFLGFASY
YRRFVPSFASKAAPLHKLVAEMSAETRGKRSAIKSDRWSGQCEEAFYDLKRALTSAPVLAYPDYTRPFVVETDASDKGLG
AVLSQMQEDGKLRVIAYASRSLRGPETNMENYSSMKLELLALKWAVCEKFREHLLGSEFIVFTDNNPPTYLQSKSKLKAV
EQRWAAELASFNFKIKYRAGKHNTNADALSRRRHAEGPAQNDEDEGGSDRTTSTPVAEDLATIAEMTVIPGEVRLGMLDD
AIRVAELGVLPSADQESGMATCPPALDKEQIKQLQERDTTLTRLRHYLKLRRKASQAERKRESRETVQMLNYPSSIEEKD
GILFRKVKSDDGIETRLLVVPTALRPEVMKAAHCDLGHQGLERTERIIRVQSPKIWKHEQVRKVEIPTQS
>Gypsy-58_DWil#LTR/Gypsy 1224-5284  [Drosophila willistoni]
MNRDEVLSLNVNELKAKLASLNLAITGRKQSLQDRLLEHFGLVADEVEVESESDDAGSFQSTAPTVVRNNFTLRDIEDSL
SSFSGSGQPSIENWLRDFEDNAEAVQWNSLQKFIYAKQLLKGAAKVFVRSERGVTDWISLKRILLSEFGSEVSAIEVHKL
LRNRRKRPNEDFREYLYSLREIGSSINLDEASLIEYFIEGIPDSKANKSNLYQAKTVIQLKEQITIYEKVYFGRPQVVNR
NRNHNEKDDRKAEISKQPRKCFKCGEVSHLMSECPKIKCFKCDQIGHKASVCPTRKLDTKKEYSRASTMSKEINVKGKAI
FKTISCGNVELSALIDTGCDLCLIRDDIIRKLHGVELSDERNRLLGVCKSELNTIGSFKAQVTIDGLQWPLTFHVYRKED
IDYEVVIGNNILELADLVITKGNATFKPREEEVMPNTEAKETVHNEEVKTPKGMLQEFESLCLLAEEEKSEIDLCHXTKS
DVKEVKQLIHSYVPQSSKKSPVEMKILLSDECPVYERPRRLSFVDKGIVDSTVEKWLAEGIIQPSTSEYASAIVLVPKKD
GGKRLCCDYRRLNAKIVREHFPMPLIDDVIERLQGNTVFTTLDLENGYFHVPVEPNSRKYTAFVTHSGQFEFLYVPFGIS
NSPHVFSRYIFATFIDLIRDGTVVTYMDDLIIPSKDIKEGIYKLKCVLNRASEFGLRIKWQKCQFLKESIEFLGYIVEKG
SIRPSKAKTQAVKNYPKPQNYKSVQRFLGLTSYFRRFIESYALIAKPLSDLLRKDATFVFGDDHQIAFEQLKAALISAPV
LRLYNPKAVTEVHTDASMFGYGGVLLQKDSDDQLFHPVQYLSRKTKPAEEKYHSYELEVLAIVEALKKWRVYLLGIEFKI
ITDCNAFAMTMKKRDIPVRVSRWALFLQEFKYEIEHRSGSKMKHVDALSRMSCLMLEDSMHHRLKIAQASDDWIRAVTAV
LEHQTYEDFFIKNGVLYKDPIKDLIVVPSLMEEELIKIARRKGHFSAKRTQEEVERKFYIPKLFQKASEIVKNCIECIVS
EGKAGKKEGFLAPINKEDKPLGTYHVDHVGPMDPTAKSYNYLFVVVDAFSKFVWLYPTKNTASEAVVDRLGRQASVFGNP
GRIISDRGAAFVSHQFGDYCKEQNIQHLMIATGVPRGNGQVERIHKIIIPMLTKLCYEKPTMWYRYVERVQQAINSTPPR
STKVSPFKLLTGVEMRTNSFPELQELLEEEAIEELEIERTNVRQEAQHNIERIQEENRKSYNKKRKKVVEYKIDDLIAIK
RTQYGSGLKLKAKYFGPYRVVKVKSHGRYDVEKVGDHEGPGKTSTVAEYMKSWNGQVNSSDDSTFEANDKSVRP
>Gypsy-82_GM#LTR/Gypsy 42-4193  [Glycine max]
MPPKKVTLPVFKQMEAKVTTLESEVSEVRTTLMEVQNNVKENHATLIALLEKCFGKSVQQDEGASGVKQKTPEGKGYPEK
EGSSGNSSGESGGAVLSEFRHAVKKVELPMFNGEDPAGWISRAEIYFRVQETTPEVKIRLAQLCMEGSTIHFFNSLWSEN
EGLTWEGLKEALLGRYGGYGEGDVYEQLTELRQGGTVDEYITEFEYLIAQIPKLLDKQFLGYFLHGLKPEICGKVRSLAT
MGEMNRSKLLQVTRAVEREVKGGGSNFYRGPKSGNGSHRPNSYGSSKSGSDWVMVKGREVEATGGARSNANGPNADKPAH
SDRRRTGPRDRGFTHLSYQELMDRKQKGLCFKCKGPYHPNHQCPDKQLRILVVDDDAEAEQEANVLAVEVDESEEEEGGE
MCILNLNHIAFENHQTVKFQGQVQGVPVLVMVDSGATHNFISQKLVHKMEWPIEETPVMNIKLGDGCYRSSRGVCCGMEL
GIGSFTISPKLHLFELGGIDVVLGMEWLKTLGDMIVNWRQQTMSFWSDKRWVTLQGIDGHEKKLVALQSILSKPKLSDQE
VLWGLETQERSEVQCLTKHQQVELDHLLVQFEDIFREPSGLPPRRNKEHAINLVEGHGAVNVRPYRYPHHHKNEIERQVQ
EMLTAGIIRHNTSSFSSPVILVKKKDSTWRMCVDYRALNKVTIPDKFPIPVIEELLDELHGANFFSKLDLKSGYHQVRVK
DSDVCKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNEVFRSLLRKCVLVFFDDILIYSRGWEDHMKHLETVLKMLAQHS
LVVNKKKCQFVQKSVEYLGHVISEAGVAVDPNKVKSVIQWPVPKNVKGVRGFLGLTGYYRKFIRDYGKVARPLTELTKKD
NFKWGVESQQAFEELKRRLTTAPVLALPDFTKQFVIESDASGGGIGAILMQDKRPIAYFSKALGRRNLTKSAYEKEMMAV
VLAIQHWRPYLLGRKFTVYTDQKSLRQLMQQRIVTAEQQNWAAKLLGYDFEIVYKQGRLNKGADALSRMYERTELNTITS
YAQWDQKQQVTMEIQKDEKLQSIIKALQQDPKAKPGYVYKQGVLMYNGRLVLSSQSQLIPVLLQEFHATPQGGHSGFYKT
YRRIAANVYWMGMKGTVQEYVRSCDICQRQKYMATAPGGLLQPLPIPEQIWDDISMDFITGLPKSRGYEAILVVVDRLSK
YSHFIPLKHPYTARSIADVFCKEIVKLHGIPVSIVSDRDPVFVSGFWKELFRMQGTQLKMSSAYHPESDGQTEVVNRCLE
TYLRCFVADQPKTWVLWVHWAEYWFNTNFHASTDKTPFEIVYGRPPPKLIRWLQGEVRIEAVQRDLIDRDEALRQLRSQL
LRAQERMKRQADKKRIDRSFVVGE
>Gypsy-142_AA#LTR/Gypsy 401-2638  [Aedes aegypti]
MEWYKINACYLDESELNYELLLRDYSTRGSLEERRRDLRALLRDPQSERLVRVTEHMMVDDLCTVPRKLKEIADILFRGS
DPSCLSRLVHYHQRIRRYQPRTRRQQEDVQYLLDLIARITMHYYGLNFDDTVRSVPIAESTVRVPRSDGNTAGAPFSVII
GPQSISENTAVEHEITQRNRESPWLMTWNEAEEAVGGNMERSDDTTGVIPALVENLLNFRNQDRTQTTGAVPRQANPPDA
SPEQCGNPSSIAHGDGPTFDHAPNVHGVQTGAVTEPNVFRPTIPLRGMSATIDRSRSGCSTPVPNPIRSSPVSNAVPENI
NLQNNEYVHVSEISTYVQRCFDQLVRQRFSTVRLDPAVDALSNNLAEMNFHPRTQALRDNRNTSVNQTFRFPDPSPPLQL
SGPTLEQRSTPVPNPSGWNTMNSTSRPRNDFRSAANSGVGNVTFAPMNQMNSGRSSASGYPRRLPHQQCSIIEKWPKFTG
DTNSVPVTDFLRQIDILCRSYDITKPELRMHAHLLFKDGAYVWYTTYEEKFTSWEMLESYLKMRYDNPNRDRIIREEMRA
RKQRPTELFSAYLTEMEMLAQRMMKKMTEAEKFEVIVENMKQSYKRRLALEPIHSIEHLAQLCFKFDALESNLYSTAAHS
RPAINQLDCDENYEDEQRELEETEELNALKARFNKRFPVTKPTPGDSKDKTKQTMCWNCQGVGHMWRECDKRKTIFCHVC
GLADTTAYRCPNKHELGQKEELPKNE
>Gypsy-103_GM#LTR/Gypsy 46-4685  [Glycine max]
MPARKITIAAFTRMEARVNALEGEISVVRSSLVSFQEEVKENHANLIAMLEKHFGKSLDDEGTGSAVSKNKETPEKKTET
PKGSHADKMNEFHQSAKKVELPSFEGEDPAGWISRAEVYFRVQNTTPEVKVSLAQLCMDGPTIHFFNSLIGEDEDLTWES
LKIALLERYGGHGDGDVYEQLTELKQEGSVEDYITEFEYLIAQIPRLPEKQFQGYFLHGLQSEIRGRVRTLATMGEMSRT
KLLQVTRAVEKEVKGGNGSGFGRGPKNGPYRSNSHGGNKGVSDWVMVKNKEGGVSSSMRSGLRGDKQAQGDNRHIGPRDR
GFTHLSYNELMERKRKGLCFKCKKPFNPGHQCSEKHLRVLIVDDECEEDGEAKVLAVEVEGGEEDEQGEMSMLDLHHIAH
ENHQTMKFQGIIKGVEVLILVDSGASHNFISQKLVHHMDWPIEQTQQMKVKLGNGVQIEAQGRCKELEMYIGSHKLRPNL
QLFELGGIDVVLGMEWLKTLGDTIINWKQHTLSFWEEGRWVTLGNKEGCKNPMIALQSIVGKPRPKKEGEVWRIEGVEPK
VVCESIRTESPHRVLEVVLGEYANVFQTTCESVLSENQHRELEEVLGEYAHVFQTPSSLPPRRKKEHAINLIDGHGAVNV
RPYRYPHHHKNEIERQVQEMLAAGIIRHSTSSFSSPVILVKKKDNTWRMCIDYRALNKVTIPDKFPILVIEELLDELHGA
KFFTKLDLKSGYHQVRVKDSDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQNLMNDVFRPLLRKSVLVFFDDILIYSQDW
DSHLRHVREVLGLLSTHSLVVNKKKCSFAQQTVEYLGHVISENGVAVDPSKVISVLQWPQPRNVKEGVRGFLGLTGYYRK
FIKDYGKVAKPLTELTKKDGFKWDEKTQAAFDTLKQKLTTAPVLALPDFSTNFVIECDASGTGLGAILMQQKRPVAYFSK
ALGVRNLAKSAYEKELMAVVLAIQHWRPYLLGRKFVVSTDQRSLKQLMQQKIMTAEQQNWAAKLMGYDFDIVYKQGKLNK
GADALSRVYEDSELSAMSSIATWIQGEQIKAEVQRDGKLQKIIAEIQLDPLSWPGYSYRQGTLLYEGRLVISNKSLLIPT
LLQEFHSTPQGGHSGFYKTYRRMAANLYWIGMKGMIQEFVLQCDTCQRQKYMASSPGGLLHPLPIPEQIWEDISLDFITG
LPKSKQFEAILVVVDRLSKYAHFIPLKHPYTARSIAEIFCKEIVRLHGIPLSIVSDRDPIFVSNFWREMFKLQGTKLKMS
TSYHPETDGQTEVVNRCLETYLRCFISDQPRTWVTWIHWAEYWYNTTYHSSTDKTPFEVVYGRPPPLLTSWTQGETRVAS
VQKDLMDRDEALRQLKTQLLKAQERMKSQADKKRVDRSFMCGEWVFVKLRAHRQQSVVTRINAKLAAKYYGPYPIVERVG
GVAYKLKLPEGSRVHPVFHVSLLKKAVGNYQEDKELPDLLEDPVEACEPEAVLASRKIKQQGEEVRQFLIHWKGKTMEEA
TWEEELMMRSQFPNFDLEDKVNSEEGS
>Gypsy-24_NVi_gag#LTR/Gypsy 763-3095 via tfasty with Gypsy5-NVi_gag, 2 frameshifts. [Nasonia vitripennis]
MSDNKKEVNKNDTQRPRLTRNAVRENPALTKDIVIPNIQNPFTKSKKIIRSPPTNSGWIKDSQQVLLSDINNKKLEDSQQ
IVTPDTDQQSKQNLEIQEILKENKDLKQEDTTPGRTTGAIKKQIKQLNKNHLSLSIPLTPAKQKEFETVEKPNHSTFSPI
TPATAIPIGLDRTVNNTKFLQGVEETSLIDIEGISDQPSLIGNPSNSKFNFTFDFDNLLDGNRANDINMAENPLRLSLKY
VANLVPEFDGKNISVNEYIEKLKHAKNMLSAADQANLIPILKIKLKGETYKAMLNATINTIEDFIKAIRQIYPSTENMHS
LYGQIEEILQKPDESVLSFANRLQELVLKIKDSKEVQGLTATEKAAFETKINNDAFQGFKEGLKQEIRIELGAVTNLTEA
ITKAIEIESKFNKRGILCHKINNNIYSDSHNHNTSNATIYACQICDSYGHEALFCHNSGCVYCKKKEHLSNNCRKVKDKI
ELICTFCNNQGHSIDACKLNKIKGNHCQYCQVMGHTVTQCPFIIEYELCWKCKESGHDPTACTKKADVSNSCEFCNSAGH
TIKACPEVICKRCNQLGHPVKYCPLVRSPIANNRFIMCSICNAEDHEAIECEQVKILVAQHKTKSFQTNIQCQVCDEKGH
SAKNCPQIGNKQQSFNNSNSKYQNFSNSNNFRKYSNYNNQNTNFQNTNNSQIKCDYCEMRGHPVYKCRKLKNLENIARRE
ENCTYCNKSGHNIKNCTEVKSLEMRASKFCSLCKNTNHMTEECFRLQNQQSVESGNE
>Gypsy-24_NV#LTR/Gypsy 63-4202 [Nematostella vectensis]
MPDESGESTSVPGFVQTNLQLPQKLETRGNLANNWKTFKRLWINYEIASQLDKQRMELRTATLISCIGPEALEIYDGLPF
ANEEDKTNINRIMELMEAHCVGETNEIYERYLFNRRNQENGESVESFIAALRSLAKTCNYGELQDGMIRDRIVVGIADNS
IRKKLLTEAKLTLAKCVDICRANEATAKRLKEMSQQSGEISAITTGPPRRKTGSKGGRRQEPRKPPHTDSSKSNPHPKCK
FCHRLHPRAKEKCPAWQKTCDTCGELNHFSVACKALKASKKGKKPIHNLDYESDSDYGALFTVESVDTLNTNPLSPKKIY
AHMRLRDELIKFQLDCGATVNILPEDLYKKVFNDPKLKRLQKSSATLVMFNKSELKPLGVVNIETLNPRNNDLLLTKFAI
VPRGYTPLLGAQSVQNFKLMTVNSENIMSLSDSSPTSDPVSEFPDVFKGEGKLDQKLHLELDATVPPVILPVRKVPLAVR
EPLKNEIDRLVGLGVLQSVDVPTEWVSSMVVVKKPNGKIRLCIDPKPLNKALKRNRYPLPVIDDLLPQLTNAKVFSVVDA
KNGFWHIQLDDESSFLTTFGTPWGRYRWTRMPFGIAPAPEEFQRRLEQALEGLEGVKPIFDDILIFGKGDSKEEAIRDHD
AKLRSLLERCRQKGIKLNKEKLKLRCAEVKFMGHVVSTDGLKPDPDKLQGIEEMPTPTNKQDIKRLLGMANYLQKFAPNL
SEAAAPMREVLREENQFHWDEQVQGQSFKNVKKIVSQAPVLKFFDPHEEVELQCDASEKGMGACLMQKGQPIAYASRSLT
ETEKNYAQIEKEMLSIVFGVERFEHYLYGRPIKVETDHKPLESIFKKSLISAPKRLQRMMLRLQKFDLQVNYKRGAEMYL
ADTLSRAFRGQKRSASRDDVGDVMLLGEMRGTTEREVESIDMIQFLPVSEATQASLRQATEQDTAMRELKSIIRQGWPEV
KDDVPVSIRDYYSFRDELSLQNGLVFKGERLVIPNSSRVEMLAKIHASHIGIQGCLRRAREVLYWPGMNKEVEEYVAKCE
ICNSHLSEQGKEPIICHEIPNRPWEKVGIDLFELNGKDFVLTVDYYSGFFEVDRLEGKTAKEVMRKIKPHVARHGIPDQI
MSDNGPPFDSHEFRQFTNSYGIEHVTSSPGYAQSNGKVENAIKTAKNLMKKATESNKDPYLALLDWRNTPSETVGYSPVQ
RLFNRRTKTLLPTSSRLLKPSVPRDVRQKLTLQKARQSLNYNRGAKELEELKQGDVVRLQPTKTVGRAKQWKQARVEGKV
DIRSYQVRTEDGRVYRRNRRHLRKTREQMQPPQQEEIEMHCPSPSRPAKPAMPTTHKQQQQEKQPSEKAPENTAQDVPDV
PAEQRTRSGRVVKPPVRFQ
>Gypsy-25_NV#LTR/Gypsy 774-4805 [Nematostella vectensis]
MATYQIPAPPPMSLQGDVVENWRDFESSWDYYTIATDLRSKLTSPPGKEIVAATLCTVMGPESKKIMNSLPTLTNADRKD
PKRIIEELRKYFVPQRNVLYERFVFNSATQKPSESVDEYVVRLRHLANSCEFGDLKDSLIRDRIVIGTTDESGRERLLRE
RPVPSLDKVVESLRAAEISRTHRQVISGKPYSSQAETIHHTDKRQPNRRNNQRKGRGNNGNNGGQQKTNGNKRRQTQDRR
PPTPGSHNSSTSCHWCGKKADHVKKDCPAKDAKCRNCGKTGHYAVVCRSNKQVHEVNREEEGSYQEDYYLDDCYFMGEVS
TTNDEFWSAEVLINHNPCTLKLDSGSKVTVVGDKAPWLENRRLDKATSMFRGPGGVNLSHLIKGQITDALFAVGGRTHRE
NVYVMKNQSKNLLSKSAIQALQLLIPSAAVHNVETAPNFKAEFPELFKGLGLMKDKYKIPLKPDAVSVCLYTPRRVPHPL
LPKVKEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVDLTPLNKAVKREIHPMASVDENLAKLKDSKVFTKLD
ANSGFWQIPLDEESRLLTTFVTPFGRYCFNRLPFGISSAPEIFQRTMSRILEGLDGTVCHMDDILIHGPTQELHDSRVRK
VLQRLKDAGVTLNEKCEFSKQRMKFLGHVISEDGVEADPEKTKAIQDFPRPTTVTELQRFNGMVNQLAKFIPDLATINEP
LRQLLKKEQQWLWDQPQERAFQAIKTKLTSTDVLAHYDPNKRSIVAADACQDGLGAVLLQSDSSGNRRPIAFASRSLNDT
EKRYAVIEKEALAATWACEKFSDYILGTPFTLETDHRPLVPLLSSTDLSKLPPRVLRFRLRMARYSPEVTYVQGVHQNTA
DALSRAPTSSPTPQDLKQIEELEEHSESVLESLPATERRLKDIQEAQDCDAICKQVKTYCLEGWPPIMPSLPLLKPYWEK
KQHLTVNRGILMYDHRLVIPSSMQLEMLETIHEGHLGITKCQGRASSSVWWPLITKQIEAMVNRCQTCAKLRPERREPLM
ALSFPNLPWSRVGTDLFELEQTDYLIVVDYASRWFEIRKLGSTTSAAVTRHMCEIFALHGIPDTVVSDNGPQYVSQEFTN
FAKDMGFTHITSSPHYPQANGEVERAVQTAKNILRKNTNPHLGLLAYRSAPLANGLTPSEILMGRKLRNKLPSVPENLKP
RKIDQEQLLKREQEYRERYSSNYNSRHRAVELPTLHQGDKVFIRDQQRYGEIEKKLASPRSYQLVTENGSEIRRNRRALV
HEPVATSGESSSLPSPSNRPPVREGGEGSPGPAASPSPSPSKAVVRRSGRLLKPTNNPDMIYY
>Gypsy-29_DWil_pol#LTR/Gypsy 1213-4413 via tfasty with QUASIMODO_pol, 2 frameshifts and 1 stopcodon. [Drosophila willistoni]
RASLPIIVWTIGKEKIKCLVDTGATTSTxNQKFSNFNTPKQNSRKPCSYKTLNGINVVKYTVTTPLPKEIPYSGTLQWNL
IDFSNKNFSAIIGQNFLKAFNAQINNTERYVQLLDRKFYFLDYEYPEAMHNACALQPVNKEEIRDRFNLAHLNDEERRAV
ETLLAESDDLFFQEGDVLSATNQIFHEIITTVDRPLYSKIYRYPQIHEKEINRQIKEMLEQNIIKKSNSPYNSPLWIVEK
KLDNSGSKKFRIVIDYRKLNEFTVDDRFPIPNLNSLLDKLGRSQYFTTLDLAKGFHQILVREEDRPKTAFSTPSGHYEFV
RMPFGLKNAPSTFQRLMNEVLKDHINDNCVVYMDDILIFSTSLQEHMTTLRKIFRTLKEANLKIQVDKCDFLKKETQFLG
HILTTHGIKPNPDKVHIIQNLKLPKTAKQIKSFLGMTGFYRKFVKDYAKIAFPMSRYLKKNETINTNDPSYIAAFEKLKT
LVTNSPVLRYPNFSKKFTVTTDASNFAVGAVLSQESHPIAYASRTLNQHECNYSTIEKELLAIVWAVKYFRPYVYGREFD
LESDHQPLKWLMAKYTGKDISPRLQRWLINLGEYNFHIEYIKGKNNNIADFLSRIKEDEINLMEVEPTDEEDNKSLTETV
HSKEEDQGFNMSILETAVNRFKTQIIFTEKKPNTIVQVFGRKRVYISKEDLENNQAVNILRREITAGKIGVFSHLSDHEF
YQFQKILTKEYTSNPKVRFVKCTRFATDIESEDELHTQIALFHKNESGHCGIVATYQKLKLKIYHPNLKTHIHRIINNCE
VCSGGKYDRKPIKNNFHLTETPKTCNEIIHVDTYVNSKQSFIIFIDKFSKHATCLPLTDRNSITIVEHIQQFLSIKGKVQ
KFVFDNEFNSLNVREFLEKEGIEYHVTKPNSHTGNSDVERLNNTLTEKIRTLNIEEKRPITEQMARAVYFYNNTHHTTTK
STPFEVQNHKVDHKELYDRMSAQKAEKISKLNKNRETYIETRTEGFIKNYKNLRHKEEPKFRKTKLQNIHTTNIKRPTKF
SDNVDTPHHVPVANTVDGNDQHNPDPG
>Gypsy-29_BG_gag#LTR/Gypsy 363-1607 [Blumeria graminis]
MQPRRSNRELSTPARFGYPAEEKKKKGDTAPVEENILRTIESDTIKEEDEHTMVDQAFSTSQLAAINEMLKTAVASALAV
EATEDAARKSRALTADLQPAVDHYLPKIDNSVKPVDSHKIRYPRLLFTDHNGEIEYDAWKMDMKLFIEEFSGNFCAGDSQ
VKAYFKCTGGEAKTIILQHMDTDVTTEFKGAADVLAALDQRFFDHNRVQRAKAAYSILKMTSNMTYNQFRIKFTNLAITG
KIARARWFDDVCEKISPALKLQIMTEKYKMSNNYTTLDEFLAVTDRESRNILAEDALHKKVVAVAVGNNASRNPGILKKS
GWTAERLTAEAARNTPAVRFPTTPETLPQVIRRTLSATNTCRLCRKEGHWARDCPNAVKIAELTGRSVEELMLEHDDGDE
DGLQPVEVDELSGNS
>Gypsy-23_NVi_env#LTR/Gypsy 6449-8188 [Nasonia vitripennis]
MPWKMPRLCGHSSPDEEEERVLLEEPRESEPQQLGQAGAETSVIPQRSAEESVIMMQPGAALPAPDTRETGQEASVSELE
PPTAVTVLAALNQESELEYEECGEGEASVSADTVAGAFEPAAAEVVASVAAVTAEETAKGNPSWADEVEGQPSQEEPQAI
QEVTECASQAEQAQHGEMRPPIKIPPLPPIVSAVTFNPNFMLPDEPERYAWLQPSDASVLFQRSLAERHGAIPKSWGTLR
RPRTILPLQKPTGRAAEKETTPERMETEEEPEDRSXVEXESEKAKKELEYLQAGTGSSTSNGSTPGLRSPVKPMQVVTPT
AQRSGAPIPRMIPIDAGQAALVSWDEDWDNEGQQPPARIAAQVPARVEEEEPEPPRRKSRKRKKAYNPRRQLTGDDYFPL
HLESREASPEPGAPVRPGQSREEGAFAGAPLRVVKKTSRPSSPSVGKFRCPGEAAWRRYNFPLSRLPPRRGGVLFRDGQP
VPVVPAIDPPPYCCFNCWDRNHAVRSCPEPERRDYCANCGRHGVRIEECPRCAEEFKRRERQRQPEDRSGSPPRKLTSRS
RRDELERERKSVRDVSEKS
>Gypsy-22_DYa#LTR/Gypsy 101-4053 via tfasty with Gypsy5_Dmoj, 1 frameshift and 1 stopcodon. [Drosophila yakuba]
MHATRAPASDEKALHVTLPKFCADSAGADPSAWCTTVDLIFADNALVGSALVLALSKALEGSASQWLSQICFAGITWSQF
KELRFVGIETTAAILMNVLNGRPKPGESFAQYGSRIVTLLLSKWKAKDLEEIAVSVAVAHMAQIDNNLLRWVFTTNVFTR
NELQQQLQAYAFKKRNNEDDFAPEKKKSRMQSQTKCHFCAKVGHKFAECRARMEGTSNTKGRSHSGSNTSGSRDRSNIRC
FKCDEMGHVASVCPKGNNKYIEKRVDLCKLSEPSGLFFQSGEPFPFFFDSGAECSLVKEKLSNKLAGKRSNNLVILRGIG
DNIVKSHLQILSTVQMSKFNLEILFHVVMDNYLKHDIMIGQDILKLGFGVMIESDKFSIYKSKIINAVQNDAPENTLEML
FDTNTDLSDNDKSKLRNILEKYADSFVIGIPNKRVTTGALEIQRRPYRLSADEKLLVREKIEQMLESNVIRPSSSPFASP
MLLVKKKDGSDRLCIDFRELNLNTISDKFPLPLISDQIDRLRGGKYFSILDMASGFYQIPIHPDSIEKTAFVTTEGQYEF
LAMPFGLKNASSIFQRAIVQALGDLAYSYAVVYIDDVLVVANTKEEAYERLNTVLKALSEAGFSFNIKKCNFLCTGIEYL
GFHIKDGEIKPNPRKIEALSVLSQPTSTTQLRQFIGLASYFRQFVPRFSEKMKPLYQLTSKLNAFVWKEEHEKIRQDNIK
VLTCDPVIFDPELPIELHTDASADGYGAMLMHKIEGKHRVVEYYSKCTSISEAKYHSYELETLAVYNAVRHFRHYLHGRK
FVVYTDCNSLKASRTKAELTPRVHRWWAYLQAFDFIVEYRKGSQMAHVDFLSRNPIPTVSNAISKVDEVRVDLATITDNW
LLAEQQRDEGINKILAQLNNEDMAANIDNTYEVRTGLLYRKIQRNGKTRCLPVIPKAFRWSVINHVHEAVMHLGWQKTLD
KVYEKYxFEHMTKYVRKVVENCMTCKLSKPSSGKMQIEMHPIPKIDIPWHTVHVDISGKLSGKNDLKEYIIVQIDAFTKF
VHLYHTLNLDSENCIKAIKSSMSFFGVPSRIIADQGRSFASNKFREFCSTNRIKLHLIATGASRANGQVERVMSTLKTML
TAVETSQRSWQDALAEIQLAMNCTTNRVTKASALELLIGREARPFGLLPVDVEESVVDREQMRAQAKENMQKNAQYDKQR
FDKNKAKIVPYKEGDHVLLKSEERHQTKLDPKFKGPFQVINVLDGDRYELKSLVNKRTYKYSHEWLRALPDRRLTTECNG
DTQEGEKLKDVTSERASVSQEGKDLINGTNEMACVQKE
>Gypsy-22_AMi#LTR/Gypsy 44-4183 via tfasty with GypsyDR1, 5 frameshifts and 4 stopcodons. [Crocodylidae]
MDTQEPTDWQQAHSLTLHLLQGQQAQLEEMVRIRTQEAEARIQLWARQQDLCEKIVAQQTSRGREGGGTGLPRMTGEDDV
EAYLEAFERVATAAKWDPGSWAARLGPLLIGPAQAAYRALSRAEARDYKKVKAAILYRLEISPETYRHKFRAKKGPKYGR
PRLLVQTLRDLAERWLRPEEHTTQEVIDMIVLEQFLTDLTGSAQRWVQCHQPKTVEEALHLAEDYTAAEGEGEAPKRERG
GGPTSTHRPNTSAPLDGQRPPERRDVQGVTRRWSVTDAGKRAIYPGSALGRPGTPPPWQKDTMKKWTAACGRHQGPGQKN
KPIVEVRIGNTIIPAIIDTGCSQSMVRSDLVPPHLGSLGTPVSMVCMHGAVYTYPRRKLELSVLGRTEEILVGLTKTLPC
PMLLGLDWPHLGEVVHQRMTDGPGAKEMRPRALCFGDEEEDLDIDQMIEGGNFHQEQxQEPLFQNLWKTQMEEPREQRVP
TPKPPRNPWYEVRRGLLYRVEDLEEGGERAQILVPRRYWEGLLRVAHTLPMGGHLGRDKTEARLKHRVFWPGIYKMTEKF
CAECPECQKMGGVKPARVPLIPMPLIDPSLITRPFDRIALDIAGPFPRSKAGYQFILVIIDYATRFPEVVPLRSVTAPAI
VTALLRWIAWVGIPREILTDQGKNFMSKILKGVCQVLKIEQLRTSVYHPQTDRLVERFNRTLKGMLRACIQGDPREWDTL
LPPLLFAIREAPQASMGFAPFELVYGHSPRGLLDLICEEWTQTQTDASQPRVVGEFRERLQRAQEIAQRHLSQSQERQRQ
QYDSRAVKRELQVGDWVVVLLPDSTHKLTAQWQGPFRVTRWTGPVNYEVLRTAPTRRRQVYHINLLRKWRQGEGWLVKPE
EEVEEGDATAVQDLTGAQEAPRVDDQLDLSRQAKVKALIAEFQDVFKEMPGEAKGVYHHIVTPPGRIIRDHWRRLPRHLW
PVVRQEIDQMKERGITEESQSPWRSPIVVVPKQDGSIRLCVDYRKLNEIARFDAFPMPQIDDVLEKIGQARFISTLDLTK
GYWQIPMAEEDKEKTAFGTPWGLFQFKRMPFGLHGAAASFQRLMEHLLAPHQEYAAAYIDDIIIFSPSWETHCEHLRQVL
GSLRRAGLTANPRKCALGKRETQYLGFVVGQGTIKPIRNKVVAIKQQPLPQTLKQLRSFLGFANYYRRFIPNFSERAAPL
TELTKGRRSPIAWNPEALKAFDQLKEALGQHPVLYTPDFRKTFFLQTDASGSAGAILFQKEGSERPVAFASRSSNPETRI
LPxKGNAxQLGRRTTPIYLLGRRFVLITDHAPCGGxGQQIEQRRLMRWSLALQPFFFQWSTERTGKQKCRFPIRPGDGPE
ARHPPSRPQKVSTKLDLRARH
>Gypsy-22_NVi_env#LTR/Gypsy 5806-6588 No matches, may just be an ORF [Nasonia vitripennis]
MEATPTTSEPQVPKPRKRESSSQTEPMAICDQLTQVNEAMLAEGYAECWTXKYKISCLXTLMARGSNFMPGNKRFAKGWF
YQTPPGWGKRDQKTGTEATPPDPATATKVLIPRRYIPARPRPTKPSAAPRIVTVVHLPPLDDAGRANLMLPALAPPQQQQ
QLPPTATPAPASPQQPPKKEEKKAPCPPPRQQTRPVALKRHLVNHHERYEPQARNEGWREEGRRLLEEKRAPRAAPSTSA
ATSAPSTSTATSRRHSTEPP
>Gypsy-23_NV#LTR/Gypsy 101-4138 [Nematostella vectensis]
MAELAGLPSPRMDWSSTDLPQAFKKFRATCELYFSGPLKEKSEPEKVSYLLIWTGDEGIELSSTWALSADDSKKLDTYWR
KFEEYVSPKSNFRLARYKLRTLKQQKEESVDSFLRKVRILVKECKYTNTDEQIIDALIFGSANPKVQSKLLEHDNSLTLD
KAIDIARTAEATQAQLADIRAEHPVTAVNAMKQSSTHKKTQTQSHSAACGNCGTKHDMSARSLCPAYNCECNSCHKLHHW
ERVCKSKSKPQPSKVQHKGKPNKGKFSKKIHTIDESDSQEPPASQLYYNSIAIDSIVKGETQAIVNLQIDSGQVTQQLPC
KIDTGAEGNILPIGSYTQLHPDTPRDQDGRPQGLKPSNTKITAFGGHIIEQYGTCLLSLSHGDITNKCAFHVVDTEGPII
LGLPTCSDMKLVTLNHGITAKPASAATAPASMDHPTDKSSLLSEHAECFKGIGCFEGEFHITLDPAVPPVVHPPRRVPEA
LQQPLKKELDSLEAQGIIAKVTEPTEWVNSLVCVTKPNGTLRLCLDPKDLNKAIKRPHHHTPTIDEVLSKLNGAQYFSIV
DVRSGYWNIKLDLESSLCTTFNSPHGRYRFCRLPFGLICAQDVFQRKVDETFGDLPGVTGIADDIIIYGKTRAEHDSNLK
AVMQRAHETGIRFNPDKCKIACTELSFFGHVISSSGLKVDPKKIEAIINMDPSTSLTDLQTFLGMVQFLSRFIPNLSSVS
AVLWDLTKSSSDFQWHTEHQAAVVQIKQLITSPGSLQYFDGRKPVTIQVDASSRGLGATLLQEKGPVEYRSKLLTETEQR
YSNIEREMLAVVHGLEKFHYYVYGRHVTVQSDHKPLEAIFKKHISSAPPRIARMMLRIQKYDVNIKYVPGKEIPLADALS
RLNPCPADTIPDLDVSVHELHLHLNASPTRVRQIQAETAKDPALTSLRSIVSNGWPEKRSECPPHLHGYWNYRDEITVSD
GLILKGTRIIIPKTLQADVLKQLHYAHQGSEKCKLRAKGSVFWTNINTDIEDMVKSCAPCQRNARMNTKEPLTPHDVPSK
PWHTLGSDLFFWNNAWYLLVADYYSKFPLVRKLNDVRSETVIKHMKSIFEENGIPEKLITGHDTQYTSSIFGDFSKTYGF
EHTSTSPYHSQANGFIERNVQTVKNVLQKCKESNSDPHLAMLCLRTTPIDHNLPSPAELLNGRVYQSNLPGVSRTARLDS
KVDHDANSKLQARQDLQKLYYDRSSKELPPLPPGSNVSVFNPHNKKWEPGTVRSQRSAPKSYTVELSTGSRFTRNRKHLR
PSAVPAEKPTDHPDIPVDGDTAQSTSSDGPSLAAGKATVEPPIIASPQPLRRSARNIKPPDRLSL
>Gypsy-22_ST#LTR/Gypsy 21-4591 [Solanum tuberosum]
MVSTRMEGRIEGLEKTMDEVQHEIGSVRDYIGQLRDWMQKKDERDAEILQHMKGKSVVQEDPIKDTDVMAENSHNRRGDR
FREVQPQFRDETRPRRLELPLFSGDNPYGWLNRAERYFHFNGIDDTDKLEAAAVCLEGRALNWFQWWETRTPVVTWDVFR
VAILQRFTPSQLGNLYEVLIGLQQTGSVAQYREDFELLSAPLKDVDDEVLVGIFINGLRGEIKAELRLSKLGTLTQIMDQ
SQRIEEKNWALSQVHLQRSMPITLPKVSTHFPGTDNSRTGSATSSHVRVATTPYHSARTTVSAVPRHFQEQKRGEIMQPG
LETSARRGGAYKRLSDAEYQDKLRRGLCFRCDEKYGPNHRCNSRQLNLLIVASEDSEDGDIEEHSNEIIDAGVNQLNVQE
QPESQKLMELSLYSIAGFTTKKSLKVGGTILGKKVIVLIDSGASTNFISRNVAEELGLKQTETKSIVVEVGNGQQVKSRG
SCKAVELWIDKLCITQDYFLFNLGSADVVLGLEWLETLGDIQANFKTLTLKFEIRGQTQVVRGDPSLSKSVVSLKTLFKA
LQTDGEGYYLDLNELTAREEQENMNLQQLLEEFGTLFEDLQGLPPNRSHDHAIQLKEGSNPPNIRPYRYPHYQKNEIERI
VQEMLVAGIIQPSTSPFSSPVLLVRKKDGSWRFCVDYRALNKITVPDKFPIPAIDELLDELGGATVFSKLDLRSGYHQIR
VCKEDVAKTAFRTHEGHYEFLVMPFGLSNAPSTFQALMNEIFRLHLRKFVLVFFDDILVYSADFSTHLGHLREVLQILKH
HNLVVNRKKCHFGQPQLEYLGHIISASGVSADPAKITSMINWPNPKDVKGLRGFLGLTGYYRKFVRDYGKIARPLTQLLK
KDAFHWNKEAQLAFESLKEAMVTLPVLALPNFKKVFVVETDASGLGIGAVLMQEGHPIAFLSQGFSIRAQSKSVYERELM
AIVFAVQKWRHYLMGKHIIIRTDQRSLQFLMGQHVMAEEQQKWVTKLMGFDFEIQYRPGCENKAADALSRQFHFMAFSVL
RSSTLDDLSTEIQQDDQLRKLTQELLQNPASRPNYVLKNGCLFFKSRLVIPRSSLHIPTLLREFHSSPTGGHSGFFRTYK
RISQVLYWNGIKRDVQNYVASCEVCKQNKYEALSLAGLLQPLPIPTQVWNDIAMDFISGLPKAMGHDTILVVVDHFTKYC
HFLLLCHPYTAKSVAELFVREIVRLHGFPKTIVSDRDRIFVSQFWQELFKLSGTSLKLSSGYHPQTDGQTEVVNRSLETY
LRCFSGAHPKQWPRWIPWAEFWFNTTYHGSAKMTPFRALYGRDPPSLLRFTDEISAVEEVNQQLMARNNILDELKDNLIH
AQAQMKVYADAKRREVVFQPGDLVYLRVQPFKLRSLAKKVNQKLSPRYYGPYTILNKIGEVAYRLDLPPHSRVHPVFHVS
WLKRAVKDSTPVQQLPPFLSDELELQVQPEGVVDCHTLLNGSKEVLIKWEGLPDFENTWESYEIIDAQFPHFHLEDKVKL
VGAG
>Gypsy-31_DR#LTR/Gypsy 673-3894 ORF. [Danio rerio]
MDVDESLNYDELKSAVLRKYDISRETYRQRFRSLEVEHLESPKELYVRLKELYGKWMQPKSKSIEEVGEVIILEQYLRML
SPELQVWVREHDPQSASQAATLADVFVAARQRNQSWWWKSSRDDRRANPPQQSMRNFPGAGKPPGGGPAFVNAPKNYRKM
PICYLCNQEGHTKPMCPRNVIKNTHLCYVPRHLAKPAPKAERSPASTTVEINGKEMIALVDTGSDQTLVHMKCISPALLR
YTNLKAVRCVHGDEKLLPTAEVYLKVRGQTYFLEVGVADNLPFPVVLGHDLPVLWDLLQPPSTCNMVVTRAQSHKRDESK
ELLATLPFFDAEIDGSTKPRKSRRQKRFEKIQYNASVMPVDKFAEFSPKFKLPVNIVQMQQEDASLVPYLERAKQEDGKT
VDGETKERFCMYQGLLYRQMGQVTQLVVPQCVREVILTLGHSIPWAGHLGKRKTIARIRKHFYWPGLNSEVAQYCKTCPE
CQKVSSDCPRRVPLQPLPLIGTPFERLGMDIVGPVEKSRSGNRFMLVVTDYATRYPEVFPLRSVKAKYVATCLVQLFSRV
GFPSEILTDQGTNFMSNLLKQVYRLLGIKSLRTTPYHPQTDGLTERFNQTLKQMLRKFVGESGTDWDQWLPYLLFAYREV
PQASTGFSPFELLYGHEVKGPLALLREVWEGNPQRNDETNVASYVIQMRERLQKMSALAQSHLAEAQTRQKTWYDQSARE
RQFKPGQKVLVMLPSHESKLLAKWQGPYEIKRKLGPTTYEVALSDHAHSTRTLHINLLKEWFPRPPESSHSLMIRQVKEE
DDSEVFLPQSALGDVDLSHLSPQQQHEVREICLPEVFSEYPGFTTLIEHNIELKPDAVVRRMSYRVPERLQEALKEEVDL
MLRLGIIEPSKSEWCHPVVLVPKKDGSIRFCIDFRYLNSVTKFDAYPTPRISDLTDRLGTSKFLTTIDLSKGYWQIPLTP
QSRELTAFKTPWGLFHFKVLAFGLHGAPASFQRLMDQVLRGLPFTAAYLDDIVVYSDTWQQHLQHLQEVLQRLQAAGLTV
NPQKCTIAKAETEYLGFVIGKGVLRPQVEKVRAI
>Gypsy-36_DWil_gag#LTR/Gypsy 28-1629 [Drosophila willistoni]
MDINIEAHNLPTLKKWLELLDLPTTGSKAELVARLNDVPVDRRGACSISIGTETVEESTEDESNRQLSETTNEKEGDNNT
DVLLKKLCDLLRPQLFDIVAPQRQTENETHDSVPTSNDSGSENEMAAELIGAQNQRHEPVLVNQRSEEVLESGFSSAAKF
QLAKEALLEFNGNSCGKKWVTQLTNISGVYGIKGVQMHMLLVSKLKGRAHEWLHANSTRILEPVGNICEQLVESFGKTVS
QADARRLFESRIWSANESFVSYIDEKARLSDAICISEEERVDKAIEGIPVEGLRIQAQIQGFKCIAELRRAFSGIQLPVQ
RAARETTKVAATGRRSKEGFRCYNCNSKGHMSKDCKKPDRVPGSCFGCGALDHWVAKCPLNKEKLAKGCDDVRFVKIYFK
TPTNPYLITACFIDSGSDVSLIKISCLPEKIHLISLNHKYYGLNKSPLLSYGKVKCFVFKNSIKVFFHLIVVDNESMSHE
VILGRDFMKACNIKLDLNALKMVTIERKEGENELGERSEFESXXXXXXPHEQGL
>Gypsy-35_ST#LTR/Gypsy 1489-6318 [Solanum tuberosum]
MPVTRRSKSTGKRVDVAAQEGTSQPPPSQAVQGEAQDESLSQTSPTPPSPEDLRREAAPQEPPINATEQDLRNAVQLLTR
IVAGHGQRQEGPVAGTSGVDRAAGTRIRDFLNLDPPSFTGSDPNEDPQDFIDQIQRTFDVMHVSGKEALELAAYRLKGVA
ILWYEAWKQSRGTDAPSATWKEFKKAFLDHYLPLEIREARADQFLNLHQGSMSVREYSLKFNSLARYAPNVVATMEDRVH
RYVDRLDSYLVRDCTIASLNKDMDIARMQAFAQKLEDQRQRRRTQESETGHSKRARSMGQFTPSQGEFRPRFFNRPPRPS
SSYSTASAPPQFQESRGNQFGQRGESQGSRTAGYQEQGSMSQSRPPRQSCKQCGRNHLGACRFGTNVCFWCGTPGHMMRN
CPHRGVGGVAQPTRSVVASSSSAPSLGRGQMPTGRGRGARGAASSSGVQNRTYALGDRQNLEASPDVVTGTLSIFSHIVY
ALIDPGSTLSYVTPLIAEKFKRTPELLVKPFEVSTPIGESIIARRVYRNCIVTVCDRDTLADLVELEMVDFDVIMGMDWL
ASCYATVDCRTKMVHFHFPKEAVLEWKGNIGAPRGKFISYLKAKKMMSKGYICHLVRVKNIDAEPPTLQSIPVVNEFPDV
FPEDLPGLPPEREVEFGIDVIPDTQPISIPPYRMAPAELRELKEQLKDLLEKGFIRPSMSPWGAPVLFVRKKDGSLRMCI
DYRQLNKVTIKNKYPLPRIDDLFDQLQGARCFSKIDLRSGYHQVRVKDKDIPKTAFRTRYGHFEFLVMSFGLTNAPAAFM
DLMNRVFKPFLDVFVIVFIDDILVYSRSEEDHANHLRQVLQILRDRKLYAKFSKCEFWLKSVAFLGHIVSDEGIRVDNQK
IEAVKNWPRPTTPTEIRSFLGLAGYYRRFVEGFSSIAAPLTKLTHKETKFQWSDECERSFQELRNKLTSTPVLVLPEGTE
GYAVYCDASGVGLGCVLMQHGKVIAYGSRQLRPHEKNYPTHDLELAAVVFALKIWRHYLYGVHVDIYTDHKSLQYIFKQK
DLNLRQRRWLELLKDYDIDILYHPGKANVVADALSRKIMASTYGQSVERQGITKDLCQLASLGVRLLESPDEGVIVQNAA
ESSLVVEVKEKQYTDPILLKLKENVQQGMTKAFELTQEGVLRCQNRLCVPNVDELRKRIMMEAHHSRYSVHPGSTKMYHD
LKEMYWWGDMKKNIAEFVAQCPNCQQVKVEHQKPGGYMQCIELPIWKWDMINMDFVTGLPRSFRKFDSIWVIVDRLTKSA
HFLPVKTTYTAEEYARLYIKEIVRLHGVPISIISDRGAQFTANFWKSFQKSLGTQVNLSTAFHPQTDGQAERTIQTLEDM
LRACVLDFKGSWDDHLPLIEFAYNNSYHSSIKMAPYEALYGRKCRSPIGWFETGETALFGPDLVHQAMEKVKVIQQRLET
AQSRHKSYADVRRRGLEFSIGDWVFLKVSPMKGVMRFGKKGKLSPRYIGPYKIIRRIGQVAYELELPQELSTVHPVFHVS
MLRKCVGDPSRITPTEDVQVTRDLTYEEVPIAILDRQVRKLRNKEVASVKVLWRNQQVEEVTWEAEEAMKLKYPHLFQTD
EKDENVELRR
>Gypsy-36_ST#LTR/Gypsy 203-5017 [Solanum tuberosum]
MQIEMADTRQTTTSQGLDTAAGEGTGKVPQVEVAHCETQGETSSQPPIASPPLQEPPRATGLPAPPAVPPLVPPIPSDQD
FKSAVCMLAQLVAAQRQPVAPDVAGPSEGPESSRVREFLALNPPQFTGTDRREDPQHFVDQLHRIFRVMHASATESVELA
AFRLRDVAVLWYESWERSRGKDASLPTWDSFTEAFIDHYLPREIRDGRVDQFLNLRQGGMSVREYGLRFDSLARYAPAFV
DTMHDRVRRFVGGLDSDYIDACSTAALNDNMDISRIQAFAQGIEDRRHLQYMSERVERERQKRARPAGSQGDFQGGPRPR
YSIRPPRPPPQQFQGSRFDRQGQSGPGEGSRASGSQQQRGSGQARTAPPRCATCGRMHFGRCRQGSTGCYSCGQEGHGWR
NCPTIGQGGIGQSTRSAVGSSSSAQSTGRGPQTSARRGRGGGREGASSSGSGQNRTYSLAGRQDSESSPDVVTGTLIVCS
HCVYALIDPGSTLSYVTPFIAGKLCIVAESLDRPFIVSTPVGESIIARRVYRGCTVEIIDRQTSVDLVELEMVDFDVIMG
MDWLASCYANVECRTKIVRFHFPGEAVREWKGDTATPKGRFISYLKARRMITKGCIYHLVHVHDIDAEPPTLQSIPVVNE
FLDVFPDELPGIPPEREIDFAIDMLPGTQPISIPPYRMAPAELKELKDQLKDLLDKGFIRPSASPWGAPVLFVRKKDGSL
RMCIDYRQLNKATIKNKYPLPRIDDLFDQLQGAKCFSKIDLRSGYHQIRVREKDVPKTAFRTRYGHFEFLVMSFGLTNAP
AVFMDLMNSIFRPYLDLFVIVFIDDILVYSRSKAEHANHLRAVLQVLRDRELYAKFSKCEFWLDSVAFLGHIVSDAGIAV
DTQKIEAVKTWPRPMTPTEVRSFLGLAGYYRRFVEGFSSLSAPLTKLTQKAAKFQWTEACEHSFQELKDRLTSAPVLALP
EGSEGYAVYCDASGVGLGCVLMQHGKVIAYASRQLRKHEKNYPTHDLELAAVVHALKIWRHYLYGVHVDIFTDHKSLQYI
FRQKELNLRQRRWLELLKDYDVDILYHPGKANVVADALSRRSMGSLSYLGVEKRELARELHQLASLGVRLLEAEDSGVTI
QDTAVSSLVVEVKSRQQEDPSLEQLRAKAQDQQXLAFDIAGDGVLRYSGRLCVPNVAGLRHRIMEEAHHSRYSIHPGSTK
MYHDIKEIYWWHGMKKDVAEFVAQCPNCQQVKVEHQKPAGLVQEIAIPLWKWEAINMDFITGLPRSRRKFDSIWVIVDRL
TKSAHFLPVRATFTAEDYAGLYIREIVRLHGVPVSIISDRGAQFTANFWKSFQKGLGTQVNLSTTFHPQTDGQAERTILT
LEDMLRACALDFKGSWDDHLPLIEFAYNNSYHSSIGMAPYEALYGRKCRSPIGWFEVGESGLIGPDLVQQTVEQVKLIRE
RLLTAQSRQKSYSDVRRRDLEFCVDDWVFLKVSPMKGVMRFGKKGKLSPRFIGPYRILRRVGRVAYELELPSGLESVHPV
FHVSMLRKCVGDPSRVVPVEDVQITEELSYEETPVAILDRQVRKLRTKEVASVKVLWRNKNREEVTWEAEDGMRSKYPHL
FHTPG
>Gypsy-37_PT#LTR/Gypsy 37-4589 via tfasty with Gypsy24-PTR, 1 frameshift and 2 stopcodons. [Populus trichocarpa]
MPPDTRTQDLRRLEETLESANKEHAAKYEQVTKLLEVYGQKMESHEVKFGEIKDLISGLTFQQSSFLQKLSLGRGEPFAN
REQPGCSNGATRNNWTREADQHPQQVYKPRHDFPSFNGDNVYQWLFRCNQYFEITKMNDFEKLKQTSYYMDDRALYWHQN
FVRHHPEVLWSEYIEALCYRFGGQKDPLEELKDLKQKADLETYIQEFDILWNRAEMIERQALVFFLGGLEVEIKNMVKMF
EPKTLYQAYNLARLQENTISHRQPHPSYSKNTYHTTGVNPSKPFTAQNNTKTTLYHTNNTEKSIPYHHKSPNTPYRPTKT
LRNKELDERRAKGLCFWCDEKFIPGHRCRNKKVYSLCILDDEDVAEEEVQEGSEIDPNTFTPQISINALEGTSGFQTLRV
TGKVGKSPLFIMIDSRSTHNFINTQVAKRLSCTLTSIRPLAVEAANGGQMTCTHVCKNFLWKMQGVQFSTDVFVVELNNC
DMVLGVQWLATLGNILSNYNELWMSFVWQGHEILLRGDIPVKLQTIGFEQFNSLINNPNQLVEVNLCSLRVVGDSDHFIS
SMTATLQPSLGSDSTIDELLHSYQDIFKEPTGLPPLRTHDHVIPLKEGSQPVNLRPYRHAGLQKDTVEKIVTEMLDSGII
QQSTSPFAPPVVLVKKKDDTWRLCVDYRALNKMTIKDKFPIPIVEELLEELGRATVFSKVDLPAGYHQIRMRAGDIHKTA
FRTYNGHYEFLVMPFGLTNAPATFQSLMNDIFRRHLRKFILVFFDDILVYNPTLEKHVEQLQIVFEILRSQSLLAKRSKC
VFGSSQVEYLGHVITKSGVATDPLKIQAIVNWPFPRNIKQLRGFLGLTGYYKRFFKGYGAICKPLTQLLKKDSYKWNEEA
TIAFEHLKQAMTNLPVLALPDMTKLFVIETDASGTGVGAVLMQEGHPIAFLSKALGPRQQALSAYEREMFAILQAVAKWK
HYLWGRHFRIRTDHVSLKHLLDQKVTYPSQHLWLTKLLGFDYEIEYHKGKDNVAIDALSRIPSGQLSTMIMTSISTPIMD
EIKMTWASDVSLKHIIRDLLHDPSSHPHYTWVNNHLNRKGKIVVGHNPALHNKLIALYHDTASGGHSGVVVTAQKVGSLF
YWKKQQKHIRQFVRECSICQQNKHENVLTPGLLQPLPIPLALFTDISMDFIGGLPKSEGKEVIFVVVDRFSKYAHFMALI
HPYSASSVARVFMDNVYKLHGLPATIVSDRDPVFLSHFWQQLFQHQGVNLHHSTAYHPQSDGQTEVVNRCLEHYLRCMSG
GSPHQWSKWVPLAEWWYNTNYHTATKSTPYEILYGFPPPLHIPYFPKDSTVEAVDQLLTQREEMLAQIKDNLLKAQHxMV
QLANRKRSDRxFIPGDLVYLKLQPYRQKSIARRSSQKLASKFYRPYSVLKKIGTVAYKLPLPPTASIHPVFHVSQLKKHI
GNKIVQSTLPITPSSPTIIPQAVLDRRMVKRGNQATTQVLLNWKGLAPSDATWEFADDIRCRFPEFSLEDKVVFEEGI
>Gypsy-37_NV_pol#LTR/Gypsy 1605-6230 via tfasty with Gyps2_pol, 3 frameshifts and 1 stopcodon. [Nematostella vectensis]
MSHLTPKQHAVICKLVGPKCKVSCMLNDISTEALWDTGAQISVLSKSWVNENGLNTDLQDIETLLGRDRNLNVSAANGSE
IPYEGWIPITLKLESHGYTGPDVEVPFLVTPGELECPIIGYNVIETVIKDFPGDNSNTTGSPLQDIMKGAFPEVRGEAVG
ALINFIQTCDNSEPLCILKSPKKSVSIPGGQTLRINCRANTGPVEEKCPVIFEPDEDQTLPTGLELSQSLLSIPKGSYRV
DIYVSNATKHDITLRGGTILGSLNLIRSVTPAEVKLSEMNLSDSRGVHPGETQESRGATIDSSQRVPGVVIGDLNEEQKK
EVTRLLQEEEETFARDSQDVGCIEDLELNLTLMDKTPVQKTYVSISRPLYAEVKGYIEDLINKGWIVKSKSSYSSPAVCV
RKRDGSLRLCIDYRELNRKSVPDRFPIPRIQDALDTLGGNSWFSVLDQGRAYHQGFMGKDSRPLTAFVTPWGLYEWVRIP
MGLSQAPAAFQRYMQDCLEDLRDTTCIPYLDDIIVFSQSFEEHVSDLRKVLQRLREHGIKLKPSKCKIFQREVTFLGHVV
SEEGYRMDQESIKAVTDLKDTPPKTVGEVRRLMGLLSYFRRYVHNFATLAAPIYDLLTEPKGGTSTKSKSRSSKSLSRQP
VSWSEEHQRILETLIDTITSPPVMAYPDYQQPFILHTDASERGLGAVLYQRQKGTLRVIGYGSRSLTQAERNYHLHSGKL
EFLALKWAITEKFRDYLYYAPKFTVYTDNNPLTYILTTAKLNATGQRWVSELADYNFVIKYRPGKANGDADGLSRISQGM
EKYMEECQKTICQEDIGATVNSVKFQAGEDGIPTISLSACLEDSPDDNVTLGTQAWSTEDIVRLQREDTTIGKVIGFILN
ESLPSLKERKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAERVLQLARDRFFW
PRMQQDIEHYVTSVCRCIKQKRPKHAQRAPMQSIQTTAPFELISLDFLHLEKSSGGYEYILVRKxLIIGYWSRFAQAYAT
FGKIGFLALQWAITEKLYNDYIMRFGFPLRIHHDQGKEFENDLHKHLEKHSGVALSRTPYHPHAMTLSDFAMLRTLPENQ
KSKWKDSLNKVVHAYNCTRNDSTGFSPFYLLYGRSPRLPIDLMLGTSLQGTPQQYPKYVTKWRETMEEAYRIARSKSTAQ
AARGKRYYEKKVRCSSLKPGDRVLVRNLSERGGPGKLRSYFEDQVFVVVNQKGESSPVYEVRPENGKGRNRTLHYNLLLP
CDYLMSDVITQPKRKTKTRKPATRNAAELKEESSSEEEPDFVYGRQVGYAPDEKEEASSESDVVLGQQEEVSGESDVAPD
RQEEIASGESDVSLDQQEEASDELDGAPDQQEGTAGELDEAIEEQAERASQQQQGEQGDRDSQENYANGSIIGRPERNRH
PPLRVTYDVIGQPSYYRGPVANHGITINESAWSAYGAPPTQELPCATCGFKAPFGLQVPYGYSVPCSLQTPYGYPVPYGL
QVPYRCPSFSPWTPAMQLQVH
>Gypsy-34_ST#LTR/Gypsy 138-5431 via tfasty with Gypsy-8_ST, 2 frameshifts. [Solanum tuberosum]
MSEEEMNDSQAGHRDGIDDINSVYNPAQSGGMGAICIPQADGNAMFEVTSTTLHLLQMRGLYGGLDHEDPHEHVRNFTEV
CSPFSFKNVSQESIRLRLFPLSLTGEASKWLAELPNNSITSWEELIIAFNARFFPPSRMMKLRDEIQGFKRREGEPIHET
WVRFKKLLLKCPTHGLPNDLLLQYFYRSLDSVNKGVADQLVRGGIMLQSFEVASFLLDDMTRINQAWYTQEDQVSPFRFR
LTQEQLDKERERDENIKKMLTQMEFLQEHMKGTCGVFRVEEGSSSGYSRPGENQGWNSKRYEEGFHPRYLQRGGNQGWNY
HKGEEQRRYYQDWAEQSDYWRREDDHEENHTHSSESPKSKGSASSPRVNDLLSRILDKVEGSDDLLKGMKDDFSSLNSKV
NSHADAIKILEGQLSLLSAQLKPKMTMEDDDRGLAVVTRSGKVAIGNVMGNEEAQKHEEDKGMEEQELLIHQSIAKEPQK
EVEQHVQIPKVMQPLPKIPPPFPQRLKKKNEDEKFKKFLSVFKTLSINLPLVEALLEMPGYAKFMKELVTKKRSLDFETI
EVSHSCSAIMTKELIKKREDPGAFTIPCTIGMLQFAKALCDLGASINLMPYAIYKQLGLGEPKATTMRLLMADRSIKHPV
GILYDILVKVDRFIFPADFVILDCEIDAEIPIILGRPFLATGRALVDVESGELKFRVNEDEVTFNVCKSMKHPSDIHVVS
TVDVIDEAVASVSHLMCMSEPLEVVLANYDEFEIQGYEEVVAALSGLGGYSKTPLKLDIDLKNRESPPAKPSTEEPPNLE
LKALPSHLRYAFLGANNTLPVIIAADLAEWQVKLLLEVLRRHIKAIGWTIADIVGIPPGICTHKIQLDSECKPSVEHQRR
LNPPMQEVVKKEIIKWLDAGVIYPIADSKWVSPVQCVPKKGGITVVPNEKGELVSMRPVTGWRVCMDYRKLNSWTEKDHF
PMPFMDQMLDRLSERGWYCFLDGYSGYNQISIAPEDQEKTTFTCPYGTFAFKRMPFGLCNAPATFQRCMLSIFADMVEDS
MEVFMDDFSVVGDTFEACLEHLGQVLQRCVETNLVLNWEKCHFMVKEGIVLGHKVSQKGLEVDKAKIEVIEKLPPPISVK
GVRSFLGHAGFYRRFIKDFSKIAHPLCKLLEKEVKFHFDDACMVAFRCLKEKLVSTPVIISPDWSESFEVMCDASGTALG
VVLGQKRNKLFHPIYYASKTLNSAQRNYTVTEQELLAVVYAFEKFRAYLLGTKVIVHTDHAALRYLMAKKDAKPRLIRWV
LLLQEFDFEVKDRRGCENQVADHLSRLEGKENDEPEVDINDSFPDEQVFAVTLKQTPWYADFANYVVCGLMPDELNFYQQ
KRFMFDVKKYFWDEPYLFRECADHIIRRCVPEEEAVEILHACHASPVGGHHSGVRTTAKVLQSGYYWPSLYKDAHEFVKK
CAQCQKQGGVSKRHELPLTPILEVELFDVWGIDFMGPFVSSFGNKYILVAVDYVSKWVEAVALPNNEGKSVVQFLKRYIF
ARFGTPRAIISDGGSHFCNKWFSAALSKYGVKHKVATPYHPQTSGQVEVSNREIKSILAKTVNANRTDWSRKLDDALWAY
RTAYKTPIGMSPYQLVFGKSCHLPVELEHKALWALKALNLDWTKTSKERVEQLNELDEFRFKAYESSALYKEKMKKWHDA
KILKREFRVGDWVLLYNSRLRLFPGKLKSKWSGPFRVTRVFTNGAIEVEGQEGPAFKVNGQRLKLYFGECQEISLIEVVY
LEDA
>Gypsy-32_BG_pol#LTR/Gypsy 1493-5353 [Blumeria graminis]
GKRVNPEQSRAQGSRKPLANEISKVVNKMDGSPFLLDVVLNKSFYIDALMDSGCLCYSAFNLSFVKRHKLPRIPIKPREL
KLAKKDSQQQSIKELTFVDVDIDGRHEKIWGYVIDKLAYNMILGNPWMRANAVVYDARRRSIRFGPPGGLRVKGKGWENN
LSPNDMAKVNCLKVNSGSARQLLGSHFMSIVTRARNTKDTATMIFAASIADINKALEVKKKQTPQEIQDSLPSEIRNNAK
YFTEDENDELPPHRHGVDTKIELLKDENGREKEVPFGPLYDMSRAELLVLRKTLTDHLDKNWIRASSSPGGAPVLFAKKP
GGGLRFCVDYRALNAITVKDRYPLPLIKETLRQVTKATWISKVDVRAAFHKLRVREGDEYKTVFRTRYGSFEWLVTPFGL
TGAPSAFQRYINSVLSEFLGEFCSAYLDDVLIYSFGDISDHWIKVNTVLDRLGLAGLKMDPRKSEFAVKQTKYLGFVICL
GNGIKVDPEKVKAIKSWQAPTNVKGVRSFIGFANFYRDFIPNFGGIAAPLLALMKKQSIFKWETQQQDAFEKLKNLFITA
PILALWDDEKDTILEADSSGYVLGGCLSQKDNHGVLRPVAYLSKKLTPAEVNYDIHDKEMLSIIRCMEEWRGMLIGLNKP
FVVLSDHQNLKHFMKRRRLNERQIRWSQFLSQFNFKLQFRPGKQAARPDALSRREQDMPQGFEDNRLQSREVQLVKDAWI
CPMITRKPDPPNFLNMSQNIPSGENMFSDENFQILWDRALQEDKSVHKLYDCLAKGERSLPTELSNLKISLAECSFDTRG
ALKFRDRVWIPDYEPLQTALIQQTHDSYVTGHPGRDSTLAILGRNFFWPGISKSVRRFCRNCDVCGRSHVWRERKKGLLR
PLPVPSRFNSELAIDFMTDLPAKSKTEARYMMVVVDRLKGGVAIEEMTSMKAEDCAKVFLKLHVRYHGFPNYITSDRGSN
WVGDFWTELCRLTGMKQRLSTAFHPQTDGATERMNQEILAYLRAFITYSQFDWKDLLPCAMLALNNRTSAALGMSPFFAE
HGYHVEPIQQIEYSSTPSRPEKNAQQFVERLREAEELAQASMASSQHRMEEYANRSRKEAEIFKKGDLVWLNLKNIETPQ
LSKKLSWINAKYEVVKVLDSHCVELNTPSGIWPRFHVDLLKRAATDPLPSQVIDDSQPPPVVPKSPEGGQQNKDDNCEPE
QFVDRILRAEKKRIGRGHQRLVLVKWKGFAEPTWETRDNLDDTKALDVFEKKYGKKDGVGEVTGSIIGRRKVTKRALLAR
ATNNQTK
>Gypsy-31_PT#LTR/Gypsy 29-4538 via tfasty with Gypsy20-PTR, 1 frameshift and 2 stopcodons. [Populus trichocarpa]
MDTRSKSNAEFRTEVTDILTRHESSFDETKQDVNAMKHDLNEIKQNFSQVTSTLQGVMAELQAFRLSRQDTSKDREGNFF
ERGETSSSSPTTITRPGFERYPNACDRIQNQAPDRIHHQTQLKLNFPIYRGDEDPTGWIFKAEQYFEFKGIELTQQVQLA
SFHLEKLALQWYRWFTRDRGPINWAEFTKVIIKRFGPTDYDDPSEALSRLKQTTSVIAYQEVFERLSHKVDGLPENFLIG
SFIAGLKDDIRIDVRVKQPKTLSETISVAHLIEERNLLQRKPSSNFRSAMPNYNHRAQPTTTVGLLGPPPMQPATQPTGN
KFPGPIRRITSQEAKERREKGLCFYCDDKFAHGHRCIRPQLFMMEDILFEDCPADVDMDIENNGEEAIPEISFHALAGTN
HPQTFRVIGKVGNKEVTVLIDGGSTHNFIDQAVVTKLALLVIRDKVFRVTVGNKEIIECIGRCMGLLLTIQGLPIRADFY
VLLVAACQAVLGVQWLETLGPIETDYKQLSMSFCHAGKSHTILGLHRSELAPMIEKELLYHSGPRFFLHMMSTTAPLEPP
THIPADLQLLLIEFDHLFKEPSGLPPVRSHDHHISLLPNQPPVSTRPYRYPHYQKNEIEKLVSEFLESDIIRPSRSPFSS
PVLLIKKFDGSWRFCVDYRALNDITIKDKFPIPVIDELLDELQGAKYFSKLDLRSGYHQIRVCDDDISKTAFHTHDGHYE
FLVMPFGLTNAPATFQNLMNDIFRPHLRRFVLVFFDDILVYSKSWDEHLQHLKVVLQLLTTHxLFVKASKCQFGVLMVDY
LGHRISWEGVAVDPNKINSVQQWPVPTSAKGVRGFLGLAGYYRKFVRDFGSIAAPLTQLLTKDGFRWTTESQEAFLKLKT
TLITPPVLRLPDFEQPFVVECDASGTGLGAILSQNDQPIAFFSEALKGSAKALSTYDKEMLAVVKAVRKWRPYLLGKPFV
IKTDHQSLKYLLEQRISTPSQARWLPKLMGYDYTILYKRGRDNQGPDALSRVTLLQFQALTLSSADWWSSLQQEVIVNPY
YATLSTKGSSNCFLRDGVWMENGKVHLSPNSSLLPAVLADAHSSSVGGHFGYLKTINRVSSSFIWPGLRIAVKAFIRNCM
VCQRCKYDTLKPAGLLxPLAIPDRIWSDISMDFIDGLPSSQGHDTIMVVVDRLSKYAHFVPLKHPYTALSVAKAFVANIV
RLHGMPLSIVSDRDRVFLSNFWRSLFQLHSTALCYSSSYHPQSDGQTEVKNRILEQYLRCYTDNPKKWLEWLPWAEYSYN
TSVHSSTKMSPFEAVYGVSPPSMISYIPGTARVQDVDDMLRSRDDILRDLRKNLVAAQVRMKCQADRHRREVSFEVGDYV
YLRLQPYRQTSVAFRSSLKLSPRFFGPFKIMAKVGTVAYRLDLPAGTQIHNVFHVSLLRKHFGPLELPIVSLPPVSADVQ
ILPKPEVILDRRVVQKGKYRPKTEVLVQWKGAGRDDATWENLWRLSKSYPDFDLEDKVAPREG
>Gypsy-32_DR#LTR/Gypsy 19-4398 [Danio rerio]
MATRKRTTRGRKAGLRSAVKDAAWRRLSSEDDEEATEPYSSLDPSTESSGGMESLMRDFLKAQKTREEMFLRELQGLRVT
VQQAVQAAPERPTGNPSPEPERENTGESSLPPPTPPPPALPSHHRAQFAHRPETPLPPFQMGDDMENYLRRFERLAQTWQ
WPKEQWSCRLVPLLTGRALEAYLAMDEVSADNYLQLKDSLLQKFNVSAESYRQRFRAASTPEGESPTETYYRLKHLYQRW
IRPDIHSVEEIGEQIILEQLLRVMKPEARIWVKQHEPSTGLAAAQLAQQYANAHRSGLRTQPERGSTRHIRHNTDNRHTQ
ELETELTPKLICYACRQYGHKASVCPARKPKLTGMCYVPREGDANSDYLMSQSVDMVNVVVNGRELKALLDTGSSISLIK
SCQVNNIDYANTTDVCCIHGDVKSYPKAEVLVHIQDEMYLLNVAVVTNLSVDMILGRDLPILNELCSKTIKMNCAGLNET
ENVLTVVTRAQAKTGLLPLPDLDDSLLQGATKGERKTRKQKRLLKKLGAPVKKAQLDGLEAKNWQIPENISELQKNDESL
KKLFKRAENPNNATMNDEHFVIIDDVLYVQVKEVKRLVVPMSVRSIVLHLAHTLPWAGHLAFQKTYARISTRFFWPTMYT
DVQTYCNTCSTCQTTSAVRHRDKAPLQPLPIVSTPFRRIAMDIVGPLERSSAGHRYILVVCDYATRYPEAFPLRTVTTSK
VVQALTELFSRVGIPDEIITDQGTNFMSRVMTQFHQQLGIKALKTTPYHPQTDGLVERFNGTLKSMLRKFVSDTGKDWNK
WLPFLLFAYREVPQASTGFAPFELLYGWPVQGPLDILKKAWTKSPTVAEDSSIVKFILEMRDKLDTYREQAMENLKEAQT
KQKRWYDMKSRLRQFQPGQKVLLLLPTSTNKLLAKWQGPYEITRKMGPVTYEILQPERKKTRQIYHVNLLKEWKERKEPE
KTLMVREVKEEDEEPAEEMVTPREAAELKLNHLEENKKKELQELLSKYPLLFQERPGRTEVTQHTIHLTDPTPSRQRPYR
IPEKLLKPLKEEIETMKQLGVIEPSSSEWSSPIVIVPKKDGSLRICVDFRKLNSQSKFDAYPMPRIDDLLERIGQARFIT
TLDLCKGYWQVPLHHSSKALTAFRTPVGLYQFTVLPFGLHGAPATFQRLMDQVLQGCEEYAAAYLDDVVIYSHTWEDHLK
HLRQTLEKIQAAGLSLNVVKCEWGRGETNYLGYILGNGGLRPQVDKVEAIKKSQRPRTKKEVRSFLGLLGWYRRFIPDFA
AIAAPLTDLLQKGTKNPVIWTEACEQAWTVLRERLCAQPVLKSPDFSQRFLVQVDASERGIGAVLAQGPAGRERPVVFLS
RKLLPRETRYSTVEKECLAIKWSLESLKYYLLGREFDLQTDHRALTWINSMKDHNARVTRWYLSLQPFQFKISHCPGRSN
LVADYLSRFPDSARHGEGED
>Gypsy-34_BG_pol#LTR/Gypsy 1185-4910 [Blumeria graminis]
MIPDLKNGPCPGSQHVPSMFAFSISESSVSPLENNLDGDHLVADCKIKNKCSHISTYALIDTGCSGFAFIDEIFARHNNL
TLSPLQFPRTLHVIDGRPISSGDVTHICHLPLAIGSHHEIVPFFVTKLGSYPLVMGIPWLQKHDPTLRFKENTILFDSEF
CKRECNHSPELIPTQGKKHKISFHMSSSDALHRLAQKENLQIFLMSTQEIKDKPMTSSENSKCLEDQIPSQYRKYYCMMD
KKLANNLPKRRQYDHKIPLMKHKNPPFGPLYGMSREELAELNRYIKENLEKGFIRASSSPAGAPVLFVKKSDGSLRLCVD
YRGLNEITVKNRYPLPLIRETLDRLAKAKWYTKLDLRQGYNQIRMAEGEEWKTAFRTRYGHFEYNVMPFGLTNAPATFQH
FINDCLREYLDVFCTAYLDDILIYSDSMEQHQIHVEKILQALYRNNVFLNPEKCEFHTQSTKYLGLIIEPNGISMDEKKL
ETVKNWTTPKNIKDVQAFLGFSNFYRRFIHGFSKIAFPLTKLTRKDIKFVWGSEQQTAFQVLKNAFTTSPILAHFDPDKP
IIVETDASDYVSAGILSQYDSSKKLRPVAYFSKKHTPAECNYEIYDKELLAIIRAFEEWRPELEGAAHPVEVISDHKNLE
YFMSTKQLNRRQARWAEYLSRFNFVIKYRPGKQGGKPDALTRRSGDLPEEGDDRLLHQSQVVLKRKNLDIDQCLELFAGS
ISHKIPDQALIKRLLDEGYKTDGFPNQIINMIQQNKRHCKEISLAECSIMEGRLLYRECIFVPNHDPLKLQLLRLYHDAT
PAGHPGREKTFELISRDYYWPSMRNYVARYVRNCHVCQRSKPSNHSKFGVLRPLPIAQQPWQEVSMDFVTGIPSSQGFDA
IMVVVDRLTKLRHLIPCNTTVTSQDVAELYLQHVWKHHGLPTHITSDRGTQFTAHFWKSLCRNLGIQSRMSTAFHPETDG
QTERFNAVMEQYLRSYVSYQQDDWVKWLPMAEFAANNQISTSTKVSPFFGNYGFHPRFTISIKPYAKSSASLDAKDFAIK
MRELHDFLRSNIRSAQDQQEQAINTKRIPAPRYQLGDWVFLSAKNIRTTRNSQKLDWRKLGPFRIKEIISAYAYKLDLPR
SMKIHPVFHVSLLHPTAEDPVPGQIQEPPPPVIVDQNKEFNVEEIYDSRETKRNGIQYFVKWTGENDATWEPAANLDDTE
AVKIFHQQYPHKPKPIEPNIASKPRRSSRLNRGLLSRNNNRG
>Gypsy-33_DR#LTR/Gypsy 19-4488 [Danio rerio]
MATRKTAPKGRKPKTGLRSQVKAASEEGADWNSVVTTEDEEGATSRPRVSSKSSSTPSKPVTSDATAGEGMYSLMRRFLD
SQEEREDRYMQELRGLRDSILQSIRPAETSIDAESARMELPTPATKVSTKHRTAYIHDSPNVTEPRVPMQWTEPKMPSFQ
QGEDIENYLQRFERLARTWRWPKEEWSYRLVPLLTGQALEAYLAMDEEEAEVYADLKEALLEKFNISPETYRQRFRSSTV
PVGESPTETYHRLKNLYKRWVQPEEHSKEEIGEVIILEQLLRVLPYDARTWVKEHEPKSGQAAARLAQQYLNAHRGGLRT
QPHKGTVRHTLHNTGSERGRTELSDNAQTQKPATKDLICFYCQQLGHKASVCPARKAKLTGFCYVPREGDCDFDSVGEGH
NVYNVTVNGHELKALLDTGSSLSMMKSRFVHNVSYENTTSVQCVHGDIKQYPRAEVMVEVQEQMYLLNVAVVDNLPADMI
LGRDFPVLYELLQPTIKDSERSIATVNVSCPALTRAQARAGLQPLPDLDSSLLQGGTKGPRKSRRQRRLEKYLGTPASES
SGEGLKVDGWKVPGNITQLQREDKTLKPLFVKAESEQTSILCNEVYVVENGVLYVRTNDVLRLVVPSCCRPLVLHLAHTV
PWAGHLGQQKTYARISSRFYWPTLYTDVQTHCKTCAVCQKTSAVSQRGRAPLQPLPVISAPFRRIAMDIVGPLEKSSAGH
RYILVVSDYATRYPEAYPLRSITTPKIIHALIQLFSRVGIPEEILTDQGTNFTSRLMGQLHKQMGITAIRTTPYHPQTDG
LVERFNQTLKNMLRKFVADTGRDWDKWLPFVLFAYREVPQASTGFSPFELLYGWQVQGPLDLLKKDWEGEPASKKEESGI
VHYVLEMRDRLEKYREQAKENLLEKQQAQKRWYDQHARLRQFQEGQKVLLLLPTSTNKLLAKWQGPYTVIRKMGPVTYEI
HHPDKGKTRQTYHVNLLKEWKEPPGKGPETALLVRKVEVEEDVEEEDMEDVKRQPSVVNLTHLEDSKREELQNLLNLFPA
LFCQRPGRTELTQHTIHLSDPTPTRQRPYRVPERLVEPLKEEIKLMKELGVIEPSTSEWSSPMVIVPKKDGSLRVCIDFR
KLNAQSKFDAYPMPRIDDLLEKIGQAKYITTLDLCKGYWQVALNPESRPYTAFRTPFGLFHFTALPFGLHGAPATFQRLM
DRVLQGCEDWAAAYLDDVVIHSNSWTEHLQHLQQTLKKIAEAGLTLNVSKCEWAKQEANYLGYHLGNGQLKPQIDKVEAI
CRSPQPKTKKEVRSFLGLVGWYRRFVPNFASIAAPLTNLLSKSVTNPVPWTNDCEKAFKTLKEKMCSSPVLQSPDFSKRF
LVQVDASATGIGAVLAQGNAEEQKPVVFLSRKLLPRETRYSAIEKEGLAIKWSLDSLRYYLLGREFDLETDHRALTWIQS
MKDHNARVTRWYLALQPYHFKIRHRPGRLNVVADYLSRFPASTRLGEGEG
>Tor3-3_env#LTR/Gypsy gi|49035828|gb|AAT48686.1| envelope protein [Oikopleura dioica]
MTGSKKLTPACPMQTACASIKRDTFAPDTETIKHSITNRSDELMTAEFAALYDISGRRDRRSVSTTVIRRQQARNDFDRR
QQRRNDCDSCISRSKRSVSDVLNFFSPIVSSFIPYVSLFTSVMQTRHSENVLIKEINNFNMAAQAIAQRQSILESFVQNQ
LCQQAFQNSVSQQHIIAASEIRNFVQVLENEVISLRLGDIPKTSEFISVLEKLCKHISTNSERFCEEAIFSKKFEIEFIG
LSAVNNTIVQSVNVKFPLQSEINLALMSYKISNVGHFQNQTAFRTKLGTRYLLRSDHQVAYNVDVSLCSKAICQISALTH
DVTSACFSSLIRNSTEHCESEQNEKSPCTFTRLNSGGFLISAXKAEFFPLKSMELVTDIKNEAIITRVTGRLRCFDNVRL
THSTHFLRGVENVDSESQFFDLYTFYHKLNSTQLEPYFKPSALAQDINKLKKISHHIEIGSSSFSFISVICINNLFMLLF
ITMVLFASGNASVITRISPALQKLWKSCFRRPVPKYTASKANGDFELKSLPQFNSKPTYYFNSFTFPRRVNTQN
>TOM_pol#LTR/Gypsy 1539-4763 [Drosophila fruit fly genus]
RKFSVTSPGRYQYLIITHKGYAHKCLIDTGSTISMMRKNFFSLPIHNTECEVFTSNGPMTLKDSITLPSNNIFRTPEQFY
LHDFSDDYDVLIGRKLLNKAQGIINYKTHTITLFDKTYPLIDTDSNKGQFFYTQDSYEKPIPKSDKKIDFSPFRLDHLNP
EETYKLKHLLNKFKDLQYFEGERLTFTNTIKHVLNTTHNSPIYSKQYPLAQTHENEVENQVQEMLEQGLIRESNSPYNSP
TWVVPKKPDASGKAKYRVVIDYRKLNEITIPDRFPIPNMDEILGKLGKCQYFTTIDLARGFHQIEMDSESIQKTAFSTKR
GHYEYVRMPFGLRNAPATFQRCMNNILRPLINKHCLVYLDDMIIFSTSLDEHLNSLQLVFEKLSESNLKLQLDKCEFLKK
EATFLGHIVTPDGIKPNPLKVEAIASYPIPTKVKEIRAFLGMTGYYRKFIPSYADIAKPMTRYLKKGAKIDINNHEYVEA
FEKLKTLITSEPILQLPNFEKKFVLTTDASNLALGAVLSQDNHPISFISRTLNDHELNYSTIEKELLAIVWATKTFRHYL
LGRHFQIASDHQPLRWLHNLKEPNAKLQRWRIRLAEFDFHIEYIKGKQNSIADALSRIKVEENHFSEATQHSAVEDNNDL
IQLTEKPINVFKKQIIFIKSDQNSVRQTTVFGNSITTIHYNNMTVENAKQFLLDHFISKSIAMYIVSDADFEIILTAYRE
IINPSYTKVTRSLILLNNVSSYAEFKEIILQAHEKLLHPGIQKMTKLFKENHYFPNSQLLIQNIINECRVCNLAKTEHRN
TKMPFKVTPSPGHCRDKFVIDIYSSEGKHYLSCIDIYSKFATLEQIKTKDWIECKNALMRIFNQLGKPTLLKADRDGAFS
SLALKQWLESEGVELQLNTAKTGVADVERLHKTINEKIRIINSSKNDEIKLGKMENILYIYNHKTRHDTTGQTPAHIFLY
AGQPTLDAQKIKEQKINKLNDDRQEYDIDTKFRKGPLQKGKLENPFKENKNVEQTDPDHYKITNRNRTTNYYKTQFKKRK
KLMRSPFHRYLAHSDDTVPVAYHELCPTNSDRRH
>Tor3_env#LTR/Gypsy gi|49035833|gb|AAT48689.1| envelope protein [Oikopleura dioica]
MHFALLLLSRCLLATTNNASIPLENGVLMYRNGENAFFTENESRQNLTFSFPAPNIENKLVTTCSRSNTNITEMTREYAN
LLIEDWLDIRIDHPFYERNYTVHGDKIILHQNAKIARILLIRIQQPNYKNLEWSGAAQSTFHFTRCERNRNKHVILVQAE
TNFNKILFRVPSSSQLLGIIWKLKSHSYTPEVTTSEKSKIIQFETDLGRVSKIEIYFTGETQEIEHGVYASISCLSLEIE
EILVVKEEKPSEFAKFVQQDENLYSKDEETNVANPSIMGSFSSYGTTLFLEETQEKALMAANTIWKEVYGNREFKMKSSN
STVHDYIQTVLQHKNTRHKIEMPNDFCDNDNGLQLQILIETSLPIIDVGIRIDNSEPLEENKDLAIKQLIDIYDIIPYVI
GLRATDIQSLLRGEIPSDTYRVKCQNSLSDYIEFFCDVKNEIFSNGAERFFFMVDIDLSEWRCNKLKRFLSQKGTTTFDV
KYIKRPLGRKRRQVAIPLVISGITSYVTHVIDKHELNEQKEQLEKQIQFSNVETAKLADLTNKDLSNLEINFDNLKRESE
KQVNKICQEVGQVTDRVFVNQIKTEIESYKSTILKFLVETNSRARHSSFMTSAIHICRSINRNLDEAACYSYMNLQRMEV
TGLTPSIDTYGRTTIKVKVTYSIANLRSIGPITRTLAIGVPIGRKGKTYFYEFTKIPRKITAISNEPIVV
>TreLTRRT2_pol#LTR/Gypsy 3619-6090 [Trifolium repens]
MVTMQSNWIPHMVSCGRERMETARMASMKATNAQLVGMSKKTTMSESQTWARITAYMAENRIKMALEANSFSENMADIAN
GEKIGKQEPELQKLDCIYDDEPLGFEKDPISQSHKMQAQDPLQEIDLGDGLMKRPTYISANIPPDLKAKVVQLLVEYKDC
FAWDYNEMPGLSRKLVEHELPVRPDKKPVKQLPRRFAPEIMSKIKEEIERLLRSKFIRTARYVEWLANIVPVIKKNGSLR
VCIDFRDLNNATPKDEYPMPVAEMLIDSAAGFEYLSMLDGYSGYNQIFIAENDVPKTAFRCPGALGTYEWVVMPFGLKNA
GATYQRAMNLIFHEYIDTFMQVYIDDIVVKSSSKVDHLDHLKKSFEKMRKYGLKMNPLKCAFCVNAGDFLGFVVHKKGIE
INQNKTKAIMETKSPTTKKQLQSLLGKINFLRRFISNLSGKAQPFSPLLRLKKEDIFTWGQDQQRAFDEIKSYLSKPPML
MPPIRNKFMKLYISASDSTLGSMLAQEDENGEEKAIYYLSRVLNDAETRYSSIEKLCLCLYFSCIKLKHYIKPVDVFVYS
HCDIIKHMLSKPILHSRIGKWALALTEYSLTYKPLKAVKGQIVADFIADHSVIETPQNYVESRPWKLYXDGSKHKHGVGI
GILIISPSKIPTKFKYKINGFCSNNEAEYEALIXGLEILLDLGAKNILIRGDSELVLKQLTKEYKCIKEHLMKYFVIAIS
LLKRFDQVXIEHVPRXENQEANDLAQIASGYKISXEKLEELIEIKDKLIXDQPXXXELSMPKLVGADVPQDNGQDTTCRI
GKGXXLQNCHFSLXYXTXSRNWHF
>Tor4b_env#LTR/Gypsy gi|49035821|gb|AAT48682.1| envelope protein [Oikopleura dioica]
MVWVHDGSVPADISILLDAPREKFRQAMKADCGEDYLVEKMPTNLFGRNDTNFNETTSDCLTAFRTFDNIIMSFLGEDLV
TSQKYRMDNIKKRIKLIDEKGENEGKRLKEQYDERMRKIENGERIRTRRNAAVAGGLTVAGTLGYTIAIDAKSRARDGLL
AEEIDVERRRITMLEEVVETIDGKLDAAIKRIRKSKTPIVAYGGLQIPNDAKAIKEIMKGADQEINRYFAETSASLGKEI
TESILTLKNHRLPLNPTFLSAIKAHCIAYQKVEEDQAKEFCNNFAFHSTRWDTKLRFLGMGITTWDRKDAKTLTKDDMEI
KQVIISMRVYIPRMKLKAKKYTTINLGYFKQDNSRWKVDVPQHLVVMPSKEVLELRPSDCLIFTPTFACDAVSLAPNQCG
ESILLSNSTKYCQTREVDNRKCGYFEDNQRSFVSMRDPGIAQFFHHAPSENVNRIDSLQKTAFPGVLDCGPAILRISTRI
TEDRKQTMIHYIQPQQIKMRTVQDEEMDAMNSKIRNNLDTVKSMGNIILEMNSTTLELMKKTAITESRNAADAAQHYIYT
KFITPLMGLIGSVLGVILLYILVKIAIKIRKRQKPTKNGKMEFSTFCPPPVSNRGDETFCEINSFNGNSRV
>TOM_gag#LTR/Gypsy 385-1581 [Drosophila fruit fly genus]
MAQPAQPENTLNESNLAEARGQLKDVPPFRGEPETLFTFISRVDYILSLYHTNDVRQQRILLGAIERNIEGHVTRTLGLP
TIEDWPTLRSRMINEYKPQAPNYKLLENFRETPYKGNLRAFCEEAERRRQILISKLHLEGNQSNLIIYLQAVRDSMKTLV
RKLPIQLFTILAHHDIPDLRSLINIAQNEGIYEEHINFETNKNIEIKNKTPNFYQNPKAFKNYPINQSQYQPRYPQYPHP
LQPNFNPYMHAPRPIYTQQLSNNQPMGPGQTYPGPNRYMNPQPIFNRIPFPKSNFNLTPQTQQPRMPSNPNFPLQQTTKR
PRPSDSEQTKMSIDELRLQEAQEYEQNYQQPYEQEYYDYTQYQDQTYEEQCQAPINQDQAEINFDENFQSPAPEDTNT
>SZ-64_gag#LTR/Gypsy 200-1270 [Oryza sativa]
MEGKLLEKLELLTQKMEAMDDKMTKHGGRLDHAVVKVDLALEAVGKLQQDQLQAAQLQKSLASSNQVSILGSPSAVSLGS
AGVSPPPPPPPPPPPPPRFHTHPVFTRNEAESSQGFDxGVRAKSCLPKMDFPRFDGSDVCIWLDMCETYFDMYQIPAMFK
VSAAVLHMSGNAAxWYQSFKLVEEICDWSQFCYAVALEFESTAQCEKVQALQTLRQTGSVADYKSQFDSLVYQVRVFDPS
VGGMMLLYRFILGLKEEIRSVLLVQLPDTVQQAAAIALVQESVLLDSGQKPLKKLTYKGVGTKVDTSVPISEPSAIKPER
AELWKAKQLKEYRRANGICFKCGDKYSPDHQCVITG
>SZ-52_p2#LTR/Gypsy #ReverseORF 7631-8395 R) [Oryza sativa]
MADEKKITTDLVRKLSGEKKELSEEKKLLTEEKKKLLAREKAFERKIIEYQDVARQRAESEDKMKEQVEVLEKKNKELEL
ACKNQSEKISALELENESCRQLLLKSCETVRIALRSLGADISLLSEENTLAAVGKWFEEFSIGLKDSVTPFASRCSKTAV
ESLSACLRSNGCEHFTTLKADIQGMLNDEAKFAQLRDAAQPIVKAFQVLYWKKKGYEDTLRSLRASLASRLKSQPASSSQ
QDKDSSTPSSSAQV
>TABOR_gag#LTR/Gypsy 1025-2344 [Drosophila fruit fly genus]
MEWNELCKNITRIRNEFEKSHKCLSQNRPILGPTTKKHANILVNSFNEARILVYDNKERLNPDHWSQVSKVLIKLRSNLL
SVKLKLGLDISIPTILNSPIKIESDEQTETEIEDEDLNNLTIPAILTLAELTEEELAESDIEETETKSVIMVDEAAAQRA
YIKDISTAIPEFDGKKINLRRFITAIKLVNLTKGPHEAIAIEVIKSKIIGTTLYRVQNEVTIDAIIRKLEEVVVGETTDV
VRAKMANVYQKGKTATQFTNEIENLRKSLESSYIDEGLQPEHAIKFSTKEAINTMTKNCDHGKLKAILEAGTFKTMDEAI
SKYIHCSTEMTGSASSVLFYKRGQGSYTRGNYRGRGNGRGGNNRNNYNQNTGQYNNFNNYNNSNGRGRGGYREYNYQNRG
GGNYNNQNRNFSSYSQNGNVRHAQGTSENQQAPLGHQEQ
>TED_env#LTR/Gypsy 4647-6395 [Autographa californica nucleopolyhedrovirus]
NVFLKVTHCYRTLLLLTIHATHPQEIRLETLADGPGLLPYKLGPTRLTIHYHSFIQPIDLNDIENKIDSVQTQLNTFRTK
LDNETYLLYEYQIDYLTNKVGKLLHQIKSLEPVRVKRGLIDGLGSIVKSVTGNLDYQDALKYDEALKTLQTNEGKLTSEF
NSHLSLCKEWMSQHNKVLEQLTLNQIRVNATLELLLQKEAYRDYSLIKFAKFAQILGIITNNVEDLMLEIIRLENMMAFI
RASSTHHSMIDIEALQSMIDRLKSLYTPNQILNLELREYYSLIKPGSYFIDKRIVIVYNFPIVSQDTYDLYKLSIVPNKR
QLALIPSSPYIATDEKSFVYIEAECPKYSSTYLCEKKTGQQIQSKPDCIQKLIVHQSLENTCQFTKISLIKEAVEKLDDQ
HYVLSLPEPTKVQLACGRKDFNTLQGSYLVTIPMGCYLQTPELTIINDDNAIKGQPLKLAKIPYDEMNLTAVSTHINFSS
IDLEDLHSIQTKFMLGKPIDIEEIQPTALYHTTIPLYVILLGAILFFTLRLIRKYKCWRLKSEDKEKQSSLEIHTYEDVK
KNTRKRDDFPATFSLNMVKNSC
>TCG3_pol#LTR/Gypsy 806-4510  [Candida glabrata]
QKYKKLTNPSQQRYTNFYINSLSVVEDGPHISPSQQIAILKHQLLQYDYENKQPINRFEIPIKFCLNKQKTHTCLLDTGA
STNLIRSDILAGFSNIKYETITPIKLTVATGEHRYLKHKVQLSFTLSGQQHQQHFYVVPTKLKPSIILGAPFINNNPQLF
IKILQQGNDSRSTTKATIAETTRGLDHDLRNPINEKYLLWVTTSDVSTTELPKELQDRYADLIVDDLPPTSTTTTVKHEI
ELVPGTAPIAKRAYRLSPVKRAELEQQIKELISSGRISPSDSPFAAPVLFVKKKDGSSRLCVDYRGLNNATVKSKFPLPL
IEDVLDSLHGAKIFSKLDLISGYHQVSVNEPDRYKTSFITHEGQYQWNVMPFGLTNAPATFQRLMNAVLRPYISKFCVVY
LDDILIYSKTREEHLHHISQVLDKLRKHSLYPKKSKCHFMLTQVQFLGHVINANGISTDPEKINAIKQWPILRNYKDAQR
FLGLANYYRRFIKNFSKMASPLYEFAAKKNTKWTTECHNAFISLKDALISAPILIAFDPKSPYQLTMTVDASDNCIGATL
EYKDGRKPKGVIAYLSHKLHSYETRWHIRDKELYAIVFALKKWTHYVQGSHVIIYTDHKTNVNLNRLALLSPRLARWAEV
LANYDFEIKYIPGPRNHADILSRPPGEPEITDSTDNDLIEIDSDHTDVNNKQGNSPETQHLAKVFFDPRPIKDLKNVTIE
TINAEVLKDPYYENIAQYIRDPNRPIPSKYFELVRRFRYFGDILVYQDKQDYVVYRVCIPKTLVHEIIREHHDTPLFGHR
GADTTYKHLLKGFYWPNMLDSIKQYIKRCPECRKGKHPTTHPYGPLHSHPIPNQRWSEISIDFIDAFKTSGDNKYDRILT
IVDNFTKMAHFIPCRKKDFTAEMLTDIFIQNIIKLHGRPLRILSDNDVLYTATAWTAVMNRLQIHRDYTTVASSSSNSFA
ERTNRTIEEILNTLVAHSPTKWSTYLPLAEFAYNNSYQATIDTTPFFANQGYHPLAINYYMPMQGDNAPYKLTDHPTIDE
HQEAQEALYLKIKQKIADQNAAKALKNNVNYQTHAYQPGDQVVVHQSVYKPPKRDEYNQLKQISKKPHYVWYGPFTIKAK
KTDQTYLVRTHNRLDGNLKEFHIRHMRPYYKKLLPKRNVPPIDTAKADSVAHESTNVINVDWKHNDWRMAAQWAHCEPWD
YSIYDQKDKPLLSHLEQRMDMFDTTISLKQALARL
>VITISV_001999_pol#LTR/Gypsy (fragment) gi|147845162|emb|CAN81618.1| hypothetical protein VITISV_001999 [Vitis vinifera]
MAFDESISEYLSLDCTLGVFDGFGCTHTITVHASRLLSVESLRGFTIGNPLECEKSIRGSIVADHLASLPVSDARAIDDD
FPDEDVAAVTSLSGWRMYFDGAANHSGYGIGVLLISPHGDHIPRSVRLAFSNQHLATNNIVEYEACILGLETALELGIRQ
MEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDMRYTHLPRAQNQFADALATLASMIDIPADATVRPLLIES
RSAPAYCCLIDDVEPNDGLPWYHDIYHFLRLGVYPEVATAKDKRALRQLAARFVICGETLYRRSADGMLLLCLDRASADR
VMREVHAGVCGPHMGGHMLARKIMRTGYFWLTMETDCCQFVQRCPECQIHGDLIHVPPSELHALTSPWLFSVWGIDIIGK
ISPKSSSGHEFILVAIDYFTKWVEAASYARLTSSGVASFIRSHIICRYGVPHELISDRGVHFRAEVDTLVQRYSIRHHRS
SAYRPQTNGAVEAANKNIKRILRKMVETSRDWSEKLPFALWAYRTSFRTSTGATPYSLVYGMEAVLPVEIEMGSLRVALE
QQIPETDWAQARFDQLNLLDERRLRAADHVRAYQRKMARAFKKRVKPRPLHVGDLVLRVIRGLIRDPRGKFRPSWSGPYF
IRELSPEGAAWLMDLDGNQFSEPTNVDQLKRYYV
>SHIV_pol#LTR/Lenti gi|9629916|ref|NP_046123.1| pol [Simian-Human immunodeficiency virus]
LELWERGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKEL
HAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGG
FINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNFPIAKVEPVKVALKPGKDGPKLKQWPLSKEKIVA
LREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGD
AYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDR
TDLEHDRVVLQSKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPG
IKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKF
AKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPI
EGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESE
SRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVAR
QIVDTCDKCHQKGEAIHGQANSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLH
TDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDM
TPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGG
KEVDSSSHMEDTGEAREVA
>HIV1_env#LTR/Lenti gi|51950727|gb|AAU14919.1| envelope glycoprotein (Picked two of the many env seqs in genbank) [Human immunodeficiency virus 1]
MRVVGTQRNYPHLWKWGTIILGLLLICSATDNLWVTVYYGVPVWRDANTTLFCASDAKSYSTERHNVWATHACVPTDPNP
QEIALENVTENFNMWKNDMVEQMHEDIISLWDESLKPCVQLTPLCVTLNCTNVNCTCNNTTCDSNSTKWANEAMKNCSFN
VTTELRDKKKQEYALFYKLDIVQMSRSDNSSDNGDYRLINCNVSTIKQACPKVTFDPIPIHYCAPAGFAILKCNTQTFNG
TGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAAEKVMIRSENITDNTKNIIVQLPRSVKINCTRPNNNTRKSIHIGPGQAF
YATGEIIGDIRQAHCNISGTEWNDTLHKVVTQLGEHLNKSTIVFYPSSGGDIEITTPTFNCAGEFFYCYTTNLFNSTWXK
NNEQXILLHSHAENTNYNNVAADRTSNVCPSQQQKYYMLIKYYRTDIDKWSWGSFADNVTFRPGGGDMRDNWGNELYKYK
VVKIEPLGVAPTKAKRRVVGREKRAVGREAVFPGCLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLK
LTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICPTAVPWNSSWSNKSYSDIWDNMTWLQWDKEINNYTSIIYNLIE
ESQNPQEKNEQDLLALDKWASLWNWFDISNWLWYIRIFIMIVGGLIGLKIVFAVLSIVKRVRQGYTPFSFQTLIPNQRGA
DRPEGTEEEGGEQGRGRSVRLVNGFLALAWDDLRSLCLFSYHRLRDLLLIVARTVELLGHSSLKGLRLGWEALKYLGNLL
LYWGQELKSSAINLLDTVAIAVANWTDRVIEVLQRAGRAILNIPRRIRQGTERALL
>SIV2_vif#LTR/Lenti gi|27311170|ref|NP_758888.1| vif protein [Simian immunodeficiency virus 2]
MEKQWIVIPTWKLDRHAVERWNSLVKYHKYKGEKHLDKWDLKAHFQCSGWWTHSQKYIPLEEDEQIIITILWNLTPEKGW
LSTYAMTIEYKFTNYYTHIDPQTADRMIHWKYLPCFTEQAIRQALLGKRLTVCYFHWGHKGKVGSLQYLALLSYTAYCNN
GRRGPRDPRRSRRGGSKYLVGKISGENQSGGKITLPPRVPFPSLERMHRTLA
>DIRS-22_NV_pol#LTR/Ngaro 501-2108 via tfasty with LvNgaro1_pol, 3 stopcodons. [Nematostella vectensis]
VSSVTPLNPNRFAWELRDHPDKKITFFVIDGIRQGFRIGFDGGLSLRSATKNNKSASEFPGVIDEYLANEVHLGRVAGPS
YxQFGVIPKRGQPDKWRLIVDLSYPEGASVNDGIDGDLFALHYIGVDDVLQLADGLGNGALLAxFDVLAAYRNIPVHPSD
RYLLGMKxRNYFYVDLALPFSLRSAPFIFNSVASAVEWILVINYQVTHLVHYLDDFIMAGPPNSSVCSLNLATALRVCSE
LCLPLHPGKCEGPSTILTVLGIQIDTVNRIAKLPEEKLADIRGLLEQWSSLKWCTRHELESLIGHLHHAAKVVWPGRTFI
RRMIDQLRCFRHRQHPIRIGSELRLDLQWWRDFIASWNGVSFWLYPGMAATPTTVVTSDAAGAMGYGAFHRSRWFNGVWT
EPQKLESIAYKELFPIVVAAHVWGHSWRKQHVLFRTDNEAVVCILTSRTSRIPSIMHLLRSLLLVAARQGFSFSAAHVPG
VENSVADALSRFNWQAFLTLAPWAAPSPTSIPQAVLVELTQPTSKPDAGSCYYKA
>CcNgaro1_yr#LTR/Ngaro gi|46194165|tpg|DAA01992.1| TPA: putative tyrosine recombinase [Coprinopsis cinerea]
LHHDCIATGPGTTARCPVFILPHASLLQLSTTAAVHRSFRKSYAVLHRTPPDPTQPIPKQPRASDESTLCERREREIFPS
EEGKISKPLSRREPAQERAFKVTSQGHKPSLEPSPRAQQAFSATCIGESAPVRVHNLPGAPPTQHLRVSIQDVAQWNAGT
LSKRRKWARHHHRRGDHIMFRLAIQSRLSEHGSRFETPVFRMRRRVSRRSKLSSGPNSMTQDPLTEPTDGNNDFEKQDFS
RNLRTFPKAFVRASTPAYPTSRSLSPHRINPQSRNLLSIFEEYYKLNTTLDVTSDHSPREKSRRCSAPSKLHHLASSQRQ
ENPGNSGSYKIYPTRTQHSQAQSRLSTATSTPITTPAPGEPSTRSTSSLPDSHPAHKQPYVTSRKHTAPFPSTPLNGLEL
SYGLTITVSQLTCATASASRLEEGSTGEWEMQARSSPGRMASVHYPNGSMTLCSSDFSHQRWKGTTRRGRNGRRKSETMV
ARGRTAAEFGSQGPSDQTATPKSSTKTRPNPSEFCRHPANSARTRNTHTICLTSTACSTIWESQSQKKKISLSVSLLPTS
ASSGMSRTSGSRSRLPSVRSICQLSQSGRARQPTTCSMPNNSMASSFIRAISSQRGEPTSQTSKPSWLSSETSHTASSPL
LAILPRIYAGGKTNFSTQSDEEKSKNTHPSSTSMVSRMLAQKSASALSLAPSGEPGSSSPDGKQKGETSDGQKQSASCSL
PLLQQVLERKRARTSNCMETTGGSLKAGGKEEAEIGRRTSSFVKYTLSARAPASPFTPITSRAPPILQTSHREASTAAPR
TSSLTYLSPTTSGNSSPTSIPNSHPIHHPSKRVQKRKQNSQEDLSNPPKRRRPAPSQSSGNTSSAMPNGIPPNTSASHLR
PINVPGKDRLRTWKPAIARNTLDHQGKPTNLAPEDLEDITTAIQGAWAPSTQETYATGLLVYHAFCDKRGIDEHQRAPAS
PVLLAAFVTSLVGLYSGKTIRNYVFGVRAWHIMHGVRWVPNDTELEALLRAGERNAPPTSKKAKRTPVTEDHIRRIHAQL
DPNNPLHAATFACLTTTFYAAARLGEFTLPNLNAFDKTHVKPSDIRVEVDRRGQEVTVFHLPRTKSSMSGEDVSWAQQNG
TVDPKSALENHLQVNQPPPDGPLFAYRTKNGKKETHKALTMKKFLEVVNQAGARANIVKISGHCIRIGATLEYLLRGVSF
EAMKAKGRWASDAFLDYLREHAQILAPYIQANPVVHKDFLDVVIPPVRR
>CAEV_gag#LTR/Lenti gi|62363229|gb|AAX81905.1| gag protein [Caprine arthritis-encephalitis virus]
MVSLDRDMARQVSGGKRDYPELEKCIKQACKIKVRLRGEHLTEGNCLWCLKTLDYMFEDHKKEPWTKGKFRNIWQKVKNL
TPEESNKKDFMSLQATLAGLMCCQMGMKPETLQDAMATVTMKDGVLEQEEKKGEEKEKEESVFPIVVQAAGGRNWKAVDS
VMFQQLQTVAMQHGLVSEDFERQLAYYATTWTSKDILEVLAMMPGNRAQKELIQGKLNEEAERWRRNNPPPPVGGGLTVD
QIMGAGQTNQAAAQANMDQARQICLQWVIIALRAVRHMAHRPGNPMLVRQKANESYEEFAAKLLEAIDAEPVTQPIKDYL
KLTLSYTNASSDCQKQMDRVLGQRVQQASVEEKMQACRDVGSDGFKMQLLAQALRPGKGKRPGQSQRCYNCGKPGHQARQ
CRQGIICHNCGKRGHMQKDCRGKKEMGRQQGNGRRGIRVVPSAPPME
>XP_001200753_pol#LTR/Gypsy gi|115617864|ref|XP_001200753.1| PREDICTED: similar to zinc finger protein [Strongylocentrotus purpuratus]
MCRVCHQMGVDFSGLIETFRSDNENPNGQSKSLGHVENYAGCALVGVLLIESENDLNVVTLGMAYGEVGAMLNDMPVVSG
RLPLNTPVSVLRDSGSSTSVVRTSLMMDDQFTGVVQLVDSPSLEEAMAVETRAQKKLKAKPNQALKVRDSGVIVQSGEFL
REQKDDLSLQPLWKKVNDTESKSRFLFVVEKNCLYRQDRDKKDSRIGVGPKLVAVPKAHRSEVMRIAHDSLFGGHLGINN
TLSKVKAQFFWPGMSEDVANFCRSCDVCQKTVNKGRVPKTTLGRLPLVGVPFQRIAIDLMGPLLPSARGHTHILTIVDYA
TRYVEAIPLKSISTIDVAEALVTVYSRVGVPCEVMSDLGTQFVSDLMRKVSQLLSVKQITSSRYHPICNGLVERYNAVVK
TALKRLCSEEPRQWDRYLPALLFALREAPSSSLGFSPFELLYGRHVRGPMDILRELWTNENIEAELKSEYEYVIDLRKRL
VESWQLAKETLKSSAKRYKGYYDRKAKKRKLNVGDEVLILLPTIQNKLLVKWQGPFKVVGTKFDYDYVVDVNGVEKTCHI
NLLTRYVRRDEEIASSCFEVGACEGEVGEGEVEIEKVDECLRGLPDMPCSVQKEFVSHVQVDEKLSKESQAKVRKLLCEY
QDVFTDVPKKTSVAECKIHLTSDEPVRSPPYRVPQAVESEIGKEVESMLKLGVIEQSDSPYAHPIVMVRKPDGTNRFCID
FRRLNKITVFDPEPMPNQQDLFASLAKSKYFSKIDLTKGYWQIPMRESDKAKTAFLTPVGQYQFRYMPFGLMTAGAQFTR
MMRRVLKSIPNVVNYIDDILVHTETWEEHVKTVEIVLCRLREANLAARPSKCFIGFSSIDFLGHELGNGTILTSSRLTQK
AVEAPRPETKKQVRSFLGLTGYYRDYIPEYADVALPLTNLTRKGSPGKVEWGPKEEEAFIKLKESLAKPPVLRLPDFDKL
FMLKVDASDTGLGAVLMQESDDEDFPIAYASKKLLPRETRYSTVEKECLAIVWAVRKFEYFLYGREFEIHTDHKPLLYIQ
TNKMTNKRIMRWSLSLQEHRFRLVSVKGSENKAADLMSRLL
>XILON1_ZM_gagpol#LTR/Gypsy 1436-6253 via tfasty with TEKAY_ZM_gagpol, 4 frameshifts and 2 stopcodons. [Zea mays]
MIVTRVWVSPAFWFTYYVNKVSYIVGKPIILLSSLSEKLCGLCWRSVKMLICSVLLENSILFSYAASFARSVLMCGCVLQ
MSENRRRGGRRAQQERAAPQDEVPQQQHLPPPPPMSIEQMFLMQTQAVQAIGQTLAAIQQQQQQQQQAPPQPQMPQMPRD
KRAEFMRGHPPTFAHSSDPMDAEDWLRTVERELHTAQCDDREKVLYGPRLLRGAAQSWWESYLATHAHPDAITWEEFRGS
FRQYHVPAGLMTVKKEEFLALKQGSSSVSEYRDRFLQLSRYAPEDVNTDAKRQYRFLRGLVDPLQYQLMNHTFPTLQHLI
DRAIMTERKRKEMEDRKRKISGPQPGSSSRPRFSGNQPQQFRQNQRPPQQHQQRQQHQQFQRQYPQHQYQNRQSNQSGGQ
FQKQNQQAPRLPAPANQQNSQAAPAQVGNRACFHCGEQGHWVMQCPKKAAQQQSGPNAPAKQNVPQPGAGNRSQQRYNHG
RLNHLEAEAVQETPGMTVGMFPVDSHIAEVLFDTGATHSFITASWVEAHNLPTTTMLTPIQIDSAGGRIRADSICLNVSV
EIRGIAFPANLIVMGTQGIDVILGMNWLDKYQAVISCDKRTIKLVSPLGEEVVTELVPPEPKKGSCYQMAVDSSEADPIE
SIKVVSEFPDVFPKDLPGMPPERKVEFAIELLPGTAPISKRAYRISGPELDELKKQIDELSEKGYIRPSTSPWAAPVLFV
EKKDGTKRMCIDYRALNEVTIKNKYPLPRIEDLFDQLRGASVFSKIDLRSGYHQLRIRPSDIPKTAFITKYGLYEFTVMS
FGLTNAPAFFMNLMNSVFMDYLDKFVVVFIDDILVYSQSEEEHADHLRMVLQRLREHQLYAKLSKCEFWISEVLFLGHII
NKEVLAVDPKKVADILNWKAPTDARGIKSFIGMAGYYRRFIEGFSKIAKPMTALLGNKVEFKWTQKCQEAFEALKEKLTT
APVLVLPDVHKPFSVYCDACYTGLGCVLMQEGRVVAYSSRQLKVHEKNYPIHDLELAAVVHALKTWRHYLYGQKCDVYTD
HKSLKYIFTQSELNMRQRRWLELIKDYELEIHYHPGKANVVADALSRKSQVNLMVARPMPYELAKEFDRLSLGFLNNSRG
VTVELEPTLEREIKEAQKNDEKISEIRRLILDGKGKDFREDAEGVIWFKDRLCVPNVQSIRELILKEAHETAYSIHPGSE
KMYQDLKKKFWWYGMKREIAEHVAMCDSCRRIKAEHQRPAGLLQPLQIPQWKWDEIGMDFIVGLPRTRAGYDSIWVVVDR
LTKSAHFIPVKTNYNSAVLTELYMSRIVCLHGVPKKIVSDRRTQFTSHFWQQLHEALGTHLNFSSAYHPQTDGQTERTNQ
ILENMLRACALQDQSGWDKRLLYEEFSYTTVIKASLRLSPFQPLYERSCRLPCKWDQLEKSKVFGPNILLEAGENIKMVR
ENLKIAHQRQxSYADTRRRELSFEVGDFVYLKVSPIRGVRRFGVKGKLAPRYIGPYQILARRGEVAYQLSLPENLSAVHD
VFHVSQLKKCLRMPEEQLPVxGLEVQEDLTYVEKPAQILEVADRVTRRKTVRMCKVRWSHHSEEEATWEREDDLMAKYPE
LFASQP
>XP_002130167_pol#LTR/Gypsy (fragment) gi|198415860|ref|XP_002130167.1| PREDICTED: similar to zinc finger, H2C2 domain containing [Ciona intestinalis]
MDRNDYDKIVKFFQTGEIPAEFETSHTRFGFKRKCRTYSLDAETLDLYYIQKNKDGSIKRRAKVVVGTSEDAKLAFYEVH
DPKMHSHMGLNRSLQAISKNYFWPRMTYDITEWIHTCPVCQNAKEADKTKLCQIKVSEPWEILSMEIIGPVNETTEGYKF
IFTATDYYSKWVEAFPICNKYPAEVAACLKLIFYRHGACKSVLSDEPSEFINQVNNELCKQLGIQHNVKAVYHPHMKSFD
DKSAQDRQAAFLSLVMEHAYDWPHYIDGMLFTMRTKKHPSTRYTPFFLLHKREARMPPVPKTDPIASIDGDFDLNQILQP
NYDSVANKSRLPEARVHQKVVENVKQSQSQQILDNARKGTDSETQKTFAVGEKVLLANNRKRPFDELNVDASYSGPFVIA
DIKTNKVRLMSLKDYSQVKIMPNIDRIIPYRESFNLSMFE
>BIV_gag#LTR/Lenti gi|9626220|ref|NP_040562.1| gag polyprotein [Bovine immunodeficiency virus]
MKRRELEKKLRKVRVTPQQDKYYTIGNLQWAIRMINLMGIKCVCDEECSAAEVALIITQFSALDLENSPIRGKEEVAIKN
TLKVFWSLLAGYKPESTETALGYWEAFTYREREARADKEGEIKSIYPSLTQNTQNKKQTSNQTNTQSLPAITTQDGTPRF
DPDLMKQLKIWSDATERNGVDLHAVNILGVITANLVQEEIKLLLNSTPKWRLDVQLIESKVREKENAHRTWKQHHPEAPK
TDEIIGKGLSSAEQATLISVECRETFRQWVLQAAMEVAQAKHATPGPINIHQGPKEPYTDFINRLVAALEGMAAPETTKE
YLLQHLSIDHANEDCQSILRPLGPNTPMEKKLEACRVVGSQKSKMQFLVAAMKEMGIQSPIPAVLPHTPEAYASQTSGPE
DGRRCYGCGKTGHLKRNCKQQKCYHCGKPGHQARNCRSKNGKCSSAPYGQRSQPQNNFHQSNMSSVTPSAPPLILD
>YLT1_pol#LTR/Gypsy 4242-7973 [Yarrowia lipolytica]
MTTLQTMLFMPDPPDAHALSGFISSADLDSVFQYPPPASPCSCCQQPVRECRVLGNTVFIMADIGDSATIVQVQPDTDLS
MRQQLYLAEVLSDAQEITPEDSLHSLSVSVNAMYKPLHKRSLPLNKLRPDGSFPVGDGSKPSPRHRNFSGDESCQFDAKL
APVLFPAELALCRHRMSDTEGVWAFNEDQEGVLSHHIEEPTKIYVEEGGVINSKHFPLRGAMVGAAKDIIMKGLANGQME
PSSSPHRNAWFLVSKKSSGYRFILDCQGLNKITLRDAFHPPNADLLAESFCGRAVTSLLDIKNGYGQKEIAPESRDLTAF
NTDFGSYRLTRLPQGWCNSPAVFHRAMLRVLGPLFPDQAVVFLDDIGVLGPKTDYGGAMHDDFPGCRRYIVEHMDNLMAV
LQNLYEAGLTVSFDKAELFVSEAEFLGFLTTSEGRFPSPGSSEKIESFEFPTTVRGVRSFLGAVVYFRMWIPHFSSIAAP
LYDCISAAQKAGKLKITKTEATESAFMALKKAMVSPAVLHRYDPTLPIVITTDASSLGWGAVMSHIVSVGPPAARRPVRF
ESGLWNPTERTYASTKTECLAVKRALEKCRHYVTGVHFVIETDNQALVFLLQQSRVELPNAMFTRWFGYIKQFDYEVRFV
KGRDNPVADWLSREKFSDFRPVDFRPPVADTARQADELAPLVPPTWSPVASITVLSIGPEPVFIHKGISLDLIFTTIASG
DLDRDGVDIPPRLRQICSEFFIFDDILLLISSPGLHRRVLFTEKEVSEVLRATHEQYGHRGAAAILHALRRLYYWPGMAD
HVKSHRASCGTCAKATNHGLLKASLHFVVPRLIWETVQLDILYLPAVHGPTKEYPDLADPAKALAAQTTLTDFLPTAPQF
TDVSSAPRGRLNVTIAPYQYVLVARDEFSGWPEAVPLRSINSLSTAAFFYDFIIARFGVPRRVYTDGGSEFKGDFKHLCE
DFHIKQVFTTPAHGQSTGIVERGHQNLLHCLRKYGRQWILYLHTALWADRCTRRSSTGKSPFELMYGVSGVLPVESRFLT
WNYLSGKTDLAHNDPAHAAFLRTLQLAASTFEVGSARDHLTLQRQRQKAFYDKHHNTADTDPLGVNDFVFVHDLRPHNKL
TPRWTGPSIVTACHPETSTYTVNDVDGENPRRIHRNRLKVFHPASIVEFQDRMKEHQSRESALPAIPGRFSACSPHVLPP
ASVATRSVRSAATTASTRVTSRSKLARVDSGLAQGSFLAQGLYS
>Ogre-MT3_orf1#LTR/Gypsy 733-2157  [Medicago truncatula]
MDSKTRSIKKYTFKKPDLTRLRELASHVTNPRDFRERHGRLLDLLKVKVEDGILETLVQFYDPICHCFTFPDYQLVPTLE
EYSFWVGLPVSEGEPFNGLEPSPKNATIAEALHLKPSDLVHPHFTIKNNLQGLTAKFLYQKASDFVKAKKTNAFESIFTL
LIYGLFLFPNMDNFVDLNAIKIFLAKNPVPTLLANTYHSIHHRNIREGGLIVCCAPLLYRWYASHLTKSVFSKENSGKAS
WSERIMPLTPADIVWVHAGTNTAGIIGSCGEFENVPLIGTCGGITYNPTLAMRQYGYPMKGRPDSLSLSNEFYLNKNDHT
NLRMRFVQAWHSIRKFDGIQLGRKQSFAHESYTQWVIDRATAFGMPYTLPRFLSSTVPEIPLPLLPQTKEEYQERLAEAE
REIHMWKRECQKKDKDYETVMGLLEQEAYDSRQKDVIIAKLNERIKEKDAALDRIPGRKKKRMDLFDGPHSDFED
>Ogre-LE1_pol#LTR/Gypsy 5816-9366 via tfasty with Gypsy3_MT_pol, 1 frameshift and 2 stopcodons. [Solanum lycopersicum]
MYCFQMRTYEIFKSLSIKFFSPFFCLVFNFYYFFFLTSKIHYKNVESEIVAYNETAQLNLNDLEEVEDNEVPEELIKRVE
EFEEKPNPNLVETEVVNLGNAEVIQETRVSIHMTKEDKKEYTEFLIENKDIFAWSYADMTGLSTAIVAHRLPTDPACPPV
KQKLRKYKPEMSLKIKEEVSKQLDVGILQVTEYPTWLANVVPVPKKDGKVRVCVDYRDLNKASPKDNFPLPNIHILIDNC
AKHETQSFVDCFAGYHQIEMHKDDAEKTAFITPWGVYNYKVMPFGLKNAGATYMRAMTTLFHDMIHKEIEVYVDDVIIKS
KESLNHLEDLRKFFARLRKYNLKLNPAKCVFGVPAGKLLGFIVSRRGIELDPSKIKAIRDLPPPKSKKEVMSFLGRLNYI
SRFIAQSTVICEPIFKLLKKDAAVKWTSECQQAFDKIKDYLSNPPVLVPPESGRPLLLYILVLDNAFSCILGQHDETGRK
EQAIYYMSKKFTSCEARYSLLERTCCALTWVAxKLRHYLSSHTTYLISRMDPLKYIFQKPMPTGKLAKWQILLSEFDIVY
VTQKAVKTQALADHMAENPVDDDYRPLKTYFPDEEVAFVGEDISEEYDGWRMFFDGAKNLNGCGIGAVLISPTGQHYPVS
AKLRFLCSNNMAEYEACILGLRRAIDLDVxEMIIIGDSDLLIHQVRGDWATKNRKLLPYLECVRRLCKRFVKTEFRHVPR
VQNEFADALATLSSMIRHPDHNYIDPIHIHIHEQPAYCFHVEEEPDGKPWYDDIRRYLKSGEYTEDATSVQKRTIRRLAT
QFFLSGEILYRRTPDLGLLKCVEAREARRLVEEIHAGTCGPHMNGFTLAKKILRSGYYWLTMETDCIRYAQKCHQCQTHA
DMIRVPPNELHVTSSPWPFAAWGMDVIGPIEPTASNGHRFILVAIDYFTKWVEATSHKSVTKKVVDDFVKNNIICRFGIP
ESIITDNGTNLNSDLMRSMCEKFKISHRNSTAYRPQMNGAVEAANKNIKRILRKMIDNHKHWQEKLPFALLGYRTTIRTS
TGATPYFLVYGTEAVIPAEVEIPSLRIIQEAKLSDADWIRGRAENLALIDGRRINAICHGQLYQNRMARAFNKKVKPRHF
SPGQLVLKRIFPNQDEAKGKFSPNWQGPYIVSRVLTGGALILAEMDGEVWPKPINSDSVKKYYV
>Ogre-VP1_gag#LTR/Gypsy 2741-7057 [Vicia pannonica]
MEDFEQENNELRGTITTLQGEVERLASLVDALMVEQTRSSAPQNQPTVIAEVTPDPDNAAAASKPLFTMPEGYPWGMPFH
FGASSQPNLPKVQTTRIEVPASQNPVFTPRRRGTSVPTSQPIMTFSNPVVHTTSDQVYHDSGDDAIPFGCMEELKEQFKE
MQREIKVLRGEDIYGKNAYDLCLVPNVKVPVKFKVPDFEKYKGNSCPQSHLVMYARKMSTYNDNHQLLIHCFQDSLTGAA
LRWYMGLDSTSIRTFDDLSKAFLRQYKYNISMAPDRDQLRAMAQKEKETFKEYAQRWREIAAQINQPMEDKEMTKIFLNT
LSSFYYERMVASAPNDFTEMVNMGMRLEDGVRMGRLTKESGSSSGTKKYGTAFPKKKEQDVGMISQGNPRGNQRQHVAAI
APASNPAPNVRITPQIQQNQQPQQQAQPFNNNQNRAPRILQFDPIPISYTELYPALIRENAIQTKAPPPVPAKLPWWYKA
DVSCPFHQGAPGHDLEHCIALKSEVQKLVRANILSFKDSAPNVQANPLPNHGGNTVNMVYGCPGEFRIFDINWSKANLVE
FHITCCRGNSNFRPHLYQRCPNGCRNSIRGCAIIRRDLQRLLDEDVIRIYRPRNQGHIDLGNVNSICECTDLYQIFDINL
SNENLVQIHTAFCAMIGVTQHDYVSCEICHNNPRGCSNVRKDLQSLLDDDVIQVYKNRNEHNVNMLGSHPHELVSDINSV
TPEVNVITPCFNMPKRIDMTYKPRKAVAPLVICLPGPIPYKSDKAVPYKYSATMMKDGQEIPLPTLPSTVNIAEISRVTR
SGRVYTPLPPKVPVVRQNPLATPASNPAVIPIGNPNPNCDVGQSSGTNVNPDFEEILKLIKKSEYKIVDQLMQTPSKISI
LSLLLNSEAHREALMKVLDQAFVDHDVTVNQFDGIVSNITACNSLCFYDEELPKEGKDHNFALHISMNCQSDSLSNVLVD
TGSSLNVMPKTTLDRLSYKGAPLKFSGVVVKAFDGSRKSVIGEVDLPMTIGPHTFLITFQVMDIQAAYSCLLGRPWIHEA
RAVTSTLHQKLKFIIEGKLITISGEQALLVNHLSTFSFIDADDMEGTQFQGLTLEDESTKKDRASISSYQDAVRVVNTGT
TAGWGQVINPVNNGTKTGLGFSSIPPKSSKKDETLRPIQETFCSGGFLDQVPQEVNLLSKEISSEKEHSDSEEEWKTYLD
DSGYISQEELFTPFGTLSEKFADMFQIRDKEVPPIPDEIWDTLGQPSGKFDYKVKYTAPESSKIAIEDIQPTGWGYPYET
SEQLEVYTDSQLPHPFEITNGDLRFNAITQIEEPEFIYPQINAIFGDNWESNLEEDLESVSDNDFLSLDDLETPLENPKS
VSKHASRSTSRPVEKAEEDRHSSTKGKTSKSSSSKSAQSSVNVITKDDSKQVMPEFIIHNGVRHYWTAVEVKNVVHRSK
>OSVALDO_pol#LTR/Gypsy 1182-4442 [Drosophila fruit fly genus]
MWTHRRAHRGLLPIGKRPAVPAVQGGAGAMPNSPKTLIGSLHDEGHQLTAIVAIGAEQQKATIDTGASSSFISERLAKRL
HGGGVVRATRRRIRLANGSCSEVNSQLDLKIRLGSRQMEVPLLVLPGVIDDLVLGCDFLAGMGTPWNVAAWRSTIEPRNP
QRSGRREAKLSVAIASGEIGHETPLDATQVDQKLIHADPEVDAFLRHELEKFQHVKGTTKITEHRITMQDTRPIKQRYFP
KNPKMQAEINKQVDELLVKGCIEPSKSPHTRTYSNGQGRKNGKWRLCVDFRQLNSRSIKDAYPLPRVHHILDQLREARYI
TSLDLKDGYWQIPMEKSSRPLTAFTVPGKGLFQWKVMPFGLHSAPATFQRALDQVIGPDMMPHAFAYLDDIIVIGRTRQE
HMDNLREVFRRLRAANLRINIDKCDFFKKELKYLGHKVTENGIRTDPEKVAAIAQLKPPTNVKELRQYVGVASWYRRYVP
DFASTVHPLNALLKKGVKWEWTEEHQRAFETVKAKLTESPVLACPDFSKPFCLQTDASNYGLGAILTQTSEEGERVISYA
SRTLNSAERNYSATEKECLAIIWGIRKLRPYLEGYHFIVITDHMALKWLNSIESPSGRIARWALELQQYDFEVRYRKGKQ
NVVADALSRQPLEEDACCLAKSRETPDGTACRWLQRLRQDMRKAPQKFADYREEAGNIYRHIPHQAGHEDVAAWKLCVST
DRRKQVLKENHDAVTAGHLGSRKTIARVAARYYWPGMYRDVRNYVQRCEVCQRYKPSQLQAAGQMLTQVPEEPWATVCAD
FVGPLPRSKHGNTMLLVFIDRFSKWTEMVPLRSANTAALQKAFRERILARFGAPKVLITDNGTQFTSRAFKNFLDELGVR
HQLTAPYTPQENPTERANRTVKTMIAQFAGSDQRCWDEALPELTLAVNSSVSASTGYTAAFITQGREPRLPKTMFDAQTL
GTGQEAQSPIERAAKMREVLEIVRRNLERAAQDQARITICGGGSGSRLLGTKCGRRNATCPMPRTDLQRSWHRDTEGHIR
WSSLYRRSSAGISSDAEKRTRTAHVADLKPWRGETGESQSGAEQAA
>OSVALDO_gag#LTR/Gypsy 55-1293 [Drosophila fruit fly genus]
MVRAWVYNLKKDDVLRYGDEFGVTLSGTLDVMRRQFGEWVETNEGRIPYSLTVAELARLHGRRPSNSEDVPTVIVGNDQY
EEDPNAARQSLPSTSAAARLQQTEQGAWRATSTPQPEIRTRGPSSSEQEYPKVAKHVREWNFRFDGTSKPLEFLEQVEWS
ADTYGLDLDLIPRAMPELLKGMALKWYVANNRHWRTWGTFVRSFQEFFFAEDYLEDLKDEVKRRKQMVDEPFKIYMVEMQ
TLMRPLRYGPDHEMKLIYNNSIPDLRAYARPYQFQSLMELMKLADEFEELERDRERLRRLQRPARTRLMAMEEDDGHEEE
MLRRGALEESPRPAPRTGATGQRTHIPNPSRACRVCGQEGHRAVRCRNRALDFCWQCGRIGVRTVACCQSGNDQRYPQSR
GEREQCQTAPRH
>MAGGY_gag#LTR/Gypsy 30-1394 [Magnaporthe grisea]
MPASLQPPILTDSTEELIEHLQRHPEQWVSYISDSYQKLQLLHDSNVRLNSCLEMQEAETQRARAETDRVRDKAQADILA
MAMEKASAITSRDAAFAELEKTRSELKEVRTVTLPTVHITTPAPTTNTPVEPLMVTPMGTTPPPASEHPASARLSERLPD
PDKFTGARSDLRRFATQIRGKMTSNKDRFPNPESRLIYIAGRLSGKAYNLILPKMVGGTPQFGDYTDLLQYLEEAFGDPD
HVQNAQNKLYALKQRNVDFAEYLSEFQRLSLEGEMPEDALPPLLFQGISEELQDMLLHNPAPSRQYHEFTRHLQSLDNRY
RQHQQYKNRQTRTPRAAAPPARAAPRTQPDIPRAAPKPNAELPLNDPMDLSSQRRHNRKENMLCYRCGSQEHFVAKCPEP
DTRRTRLHQAGIERSRSRSRSPRQIQTKLPKNPRRGSDASRSSSRSSKNGARLG
>Huck1_ZM_gag#LTR/Gypsy 535-3276 Huck apparently has a second gag gene with many frameshifts and stopcodons) downstream [Zea mays]
MSLLVDQKVPTDSHPTSFRLSLNPPSDLALAGALVEASSNPLGFRMRSPWDRLTDVSTYGPSGSEEDDDPSICWDFSGFG
NPSAMRDFMTACDYCLSDCSDGSRSLDDEDCGPSRECFHVELGDPSEGNHLGMPEDGDLPRPVPRADIPRELAVVPVPAG
GHDPQLEQVRGAQARLDEGAGALEPIRRDVGQVWAGQPPAREIRHLPQGFQHRVANDVRVRPPPASSGVGQNLAAAAMLL
RAMPEPSTTEGRRIQGELKNLLEGAAVRRAESSASRRQGYPSEPHVATSRFMREASVYTGRTRNTAPAAPGHLGNEHHHR
DRRAHLRRGGRYDSGEDRSPSPEPPGPQAFSRAIRRAPFPTRFRPPTTITKYSGETXPELWLADYRLACQLGGTDDDNLI
IRNLPLFLSDTARAWLEHLPPGQISNWDDLVQAFAGNFQGTYVRPGNSWDLRSCRQQPGESLRDYIRRFSKQRTELPNIT
DSDVIGAFLAGTTCRDLVSKLGRKTPTRASELMDIATKFASGQEAVEAIFRKDKQPQGRPSEDAPEASTPRGAKKKGKKK
SQAKRDAADADLVAAAEYKNPRKPPGGANLFDKMLKEPCPYHQGPVKHTLEECVMLRRHFHRAGPPAEGGRARDDDKKED
HQAGEFPEVRDCFMIYGGHAANASARHRKQERREVCSVKVAAPVYLDWSDKPITFDQADHPDHVPSPGKYPLVVDPIVGD
VRLTKVLMDGGSCLNIIYAETLRLLRVDLSSVRAGAAPFHGIIPGKRVQPLGRLDLPVCFGTPSNFRRETLTFEVVGFRG
TYHAVLGRPCYAKFMAVPNYTYLKLKMPGPNGVITVGPTYKHAFECDVECVEYAEALAESEALIADLESLSKEVPDVKXH
AGNFEPVETVKAVPLDPSGDTSKQIRIGSGLDPK
>HMSBeagle_pol#LTR/Gypsy 2603-5782 (Gypsy2_DM_pol (2035-5169) 96% similar) [Drosophila fruit fly genus]
WTNRQFGQRTTRPRVAFFRVEDSSLPYFECRVGSGKVLRVLIDTGSNKNYIQPNLVTNAIPNNKPYIADTPGGDVKISHY
KRASLFDFEIKFFLLPTLKTFDAILGKDTMKGMGAQIDLKNLTMTLENGKRVVLKEKQFEAVSTISPRIKHLEVEQRMIL
NKIIDSYPGLFADPNQKLTYTTSVRAAIRTISDTPIYSKFYQYPMSLKDEVHKQISELLHDGIIRPSRSPYNSPVWIVPK
KLDSSGKKKYRVVIDYRKLNMVTVADRYPIPDINEVLAQLGDNKIFSVLDLKSGFHQILLKESDIEKTAFSINNGKYEFT
RLPFGLKNAPSIFQRALDDILHEHIGKICFIYIDDIIIFSKDDETHYQNLDTIFRTLQQANMKCQLDKCEFMKRKVEFLG
FVVSDKGIETSPTKVQAISDFPIPRTLKELRSFLGLSGYYRRFIPNYAKLAKPLSSLLRGEDGRISRTLSSKKSVSLNRE
AIEAFKKLKSSLVSPDVILHYPDFKKEFHLTTDASNFAVGAVLSQENRPISFLSRTLSKAEENYATNEKEMLAIIWALKK
LKIYLYGKAKVKIFTDHQPLTHSLSSWNGNARIKRWKAYLEEYDYEIFYKPGRENTVADALSRGPTVEQINTVASTMHSS
DSSSHGLIPSVEAPINAFKNQIFFRESESENYSFSIPFPTFQRHLVDRNLFTPDSLLSDLKEYLNPSVINGIFTSEDVMG
KIQILYPIHFQGFKIRFCQSKVKDLVNEAEQEEEILRTHNRAHRNAVENKAQLSERVYFPKMRKKVSAIVNQCLVCKTAK
YDRHPTHPEIRQTPLPEYPGQIIHIDIYSTERHLVLTAIDKFSKLAMGRVIKSKAVEDIRKALRDIVFYYGVPKLIVMDN
EKSLNSASIKFMLTDQLGIELYKAPPYKSTVNGQIERFHSTLSEIMRCLKGDGTHRGFEELLDRAIYEYNYTVHSVTKKR
PLEVFFGRIATVAPEKYEQARLDNIDRLRQKQETDIEYHNRTRKPIKTYIKGQEIFVRVNTRLGSKLSSRFRKELVKEDR
STTILTESGKLVHKSNIRS
>IBGypsy1_pol#LTR/Gypsy 906-6813 (deleted pos. 4437-5842 that may be an LTR insertion to create a complete ORF with continuous homology to other gypsy pol genes; any predicted introns skip a region of homology to other pol genes) [Ipomoea batatas]
MSSMASTSEQGSIIAQMEKMMTMMKDLSDRLQNIENQRVRVENEGVQNHEGGNQEERRGREITRYNSLPRMLPRRFVEER
VDNNLSSLRMEMPTFNGDDEPEVFLNWVDEVEDIFGLHNFGEEKKFKTAIASLKDFAKLWWKQLSRRRLEDQDEPIETWG
ELKREMRRKFVPSNFYRDMRRKLQELKQGSKSVREFYKEMERLKARANIQEDDETTIARILEGFNRDIRRELRNQEFDDV
DKLVRVASKVEDELRSERGSKPSLSSQWDQPRRATNNSYQSRTQKEYSRPSHTQEEKKNNQREKEKFQEGSKQKVSTVTC
YRCQGRGHYARECPNTKKILTTGKDEREYMSANESDDEELEPIGERQKDDHSEEEVQEDDALHFNCVVHKALSTLVVLDQ
EEQRENIFYGKCKIPGATCSFIIDGGSCTNVISEDVVNAMKIPTIQHPQPYKLQWLNDDGELKVHKQALISISIGKYQDD
VLCDVIPMHACHILLGRPWQYDRDTLHHGKTNKYTIHKGGKKYTLTPLAPKEVYNLQVQSKKLREELAQKAKEAMKETTS
GKQNTIAHEKKQRKEGMKKDTTQSSHNLLMTKREVEQALRRGEGVFLLYPIDFCLNVIKSEIIPSDVSALLSEFADVFPE
ELPKGLPPIRGIEHQIDLIPGASLPNRPAYRTNPDEAKEIQRQVDELLQAGFIQESLSPCAVPVLLVPKKDGTWRMCVDC
RAINNITVKYRYPIPRLDDMLDELHGAKIFSKIDLRRGYHQIRMQKGDEWKTAFKTKNGLYEWLVMPFGLTNAPSTFMRL
MNHVLRNFIGKFVVVYFDDILIYSKDPQKHIIHLKEVFLVLRREQLYANLEKCYFGVESVVFLGFIVSSKGIEVDETKIQ
AIRDWPTPKTATKVRSFHGLASFYRRFVKDFSTIAAPLNELVKKDVKFEWGPKQEQAFQTLKEKLCSAQVLSLPNFDKTF
EIECDASGIGIGAVLMQEGHPIAYFSEKLSGPALNYSTYDKELYALVRTLETWEHYLWFKEFVIHSDHEALKHLRGQGKL
SKRHAKWLEFIEAFPYVIKYKQGKENRVADALSRRYALLSSLQAKLLGFEFLKELYSNDVDFAEKYKACSTTPIGKYYLL
DGYLFKENRLCVPNCSLREMFIKEAHSGGLMGHFGVTKTYEVLHGHFFWPKLRRDVEQFVSKCVTCKQAKSRSLPQGLYT
PLIVPKEPWTDLSMDFIVGLPRSRRGHDSIYVVVDRFSKMAHFIGCHKTNDASHIADLFFKEVVRLHGIPRTIVSDRDAK
FLSHFWRILWGKLGTKLLYSTACHPQTDGQTEVVNRTLTQLLRVVIRKNLKSWEESLPYVEFAYNRAIHSTTNMSPFEVA
YGFNPLTPLDLIPLHVNDKECVDAAKKAQGIREFHSKVRAQIEKKNEQYAQKANKGRKAIIFKPGDWVWIHYSKNRFPNQ
RKSKLMPRGDGPFQVLERINDNAYKLDLRGEHSVSSTFNVADLAPFDFSDSGTNLFQEGE
>LYDIA_pol#LTR/Gypsy 2027-5279 via tfasty with TED_pol, 3 frameshifts.  [Lymantria dispar]
MYNSCNVNLCEDIIPPKSPKLIKIPINTPDGAALVSEQTICNCIIHECLTNVKNNRGYIEIENSTPNDIILSLDRPAHAE
LFNTEYTRTEXPHSRVSEVISRLRTEQLGPEEKANLTTLCSSYADVFYIEGETLTFTNKIKHRIRTTDEVPVYTKSYRYP
FIHRQEVSDQISKMLNQGIIRPSDSAWSSPIWVVPKKMDASGKQKWRLVVDFRKLNDKTIDDKYPIHNISDQLDKLGRCQ
YFTTLYLASGFYQVEIDPLDISKTAFNVEHGHFEFLRMPMGLKNSPSTFQRVMDNVLGDLQNNICLIYLDGIVVFSTSLQ
EHMVNLEKVFQRLRESNFKIQMDKSAFLKLETAYLGHIISGDGVKPNPDKISAIENYPIPKTPKEIKQFLGLIGYYRKFI
PDFGNLTKPLTQCLKKGKTITLDPQYISCFEKCKTLLSNDPILQYPDIEKDFSLTTDASNVAIGAVLSQGPIGSDKPVCY
ASRTLNDSELNYSTIEKELLAIVWATKYFRPYLFGRKFKIITDHKPLQWMVNLKEPNSRLTRWRLKLSEYDFTVVYKKGR
HNTNADALSRIEIHNEDLNSIVDELCSLIPNPTDEPPTIVNSSTETAHTSLEHPILEIPITDEPLNKYYRQIHFTIVNDV
KRKPHVTKPFETHTRIAIQLSKSNLENDIINAIKEYVSPKVKTALLITPPLAMYSIIPVIQKTFRSSSLNLVLTKLEIEN
IKDYLRQQEIIRNYHDGKTNHRGITECYLSLSRKYYWPKMKDQITKYINECIICGQAKYDRNPIKPQFNIVPPATKPLEV
VHMDLFTVHNEKYITFVDVFTKYGQAYHLNDGTAVSILQALLKFCTHHGVPLTLITDNGTEFTNQLFSEFTRLHKINHHR
ILPHPNDNGNIERFHSTILEHLRILKLQNKDEPIVYLIPYAIIAYNSSIHSFTKCRPFDLLNGHFDPRDILDIDFTHHLL
QQYSQNHKAQMNEVYKIINDSSLTNRTALIEQRNINREPEIEYTPQQQVFIKNPFANSQKVAPRFTQDTVLADLPIHIYT
SKKRGPVAKSRLKRGHKVPQSLNDSTVTDPSRDNASRDKSFSYT
>Invader4#LTR/Gypsy 49-921 [Drosophila fruit fly genus]
MAALEAQNRNLMEIIRTMHAPRASASNEKSLHVTLPKFCADSAGADPSAWCTTVDLIFADNALVGSALVIALSKALEGSA
SQWLSQICFAGITWPQFKELFIQRFVGMETSAAILMNVLNGRPTPGESFAQYGSRIVTLLLSKWKAKDLEEIAVSVALAH
MAQIDNNLLRWVFTTNVATRNELQQQLQAYAFKKRNNEDDSGPEKKLRMQLQTMCHFCGKAGHKFAECRARKEGTSNTKG
RNYSESNTPGLKDRSNIKCFKCDEMGHVASVCPKGHNKYIEKRVDVCETK
>PIGY_PS_env1#LTR/Gypsy 5202-6107 (env gene appears interrupted; perhaps an intron) [Pisum sativum]
MSQEDLFEYRELKHFWGSLTGNDDPEEHEFLSGNIHIPAFRYFHKILAHTLFGKRSNITTISCDELFIIFCASQNRPVNG
ATYMLASFDLLIQDDRAPIQIGGLITMIANAIGLRQPMLDLNPFCGIEPMNILFLFNTMFIGNLGPEEFELLINNQAFYL
FTMPSPMTSVHNRNNWLYNLDGIPSPVRSVETIQDYEILDNQIPYAESDPQTPTGYHDAASPHHPIPSAESAIPDLRHHM
PGTDYNTAIQALMSEQDAIREELTKMGHEFLEYMSGMTNQFHELLHRVNSFAPPTRDSTSG
>Rover_DM_pol#LTR/Gypsy 2102-5292 via tfasty with DM176_pol, 3 frameshifts.  [Drosophila melanogaster]
RIRQYQRSRKFSASCPGSNQYIIIKHNDIDLKCLIDTGSTINMLTWNIFETPIQQTNHLIHTSNGSVTINETTTIPPNNY
FPIAQEFLIHKFSDHYDMLIGRKLLSKAKAIIDYQKKTATLFNKVYKIKDTEKLTDQNHAQVDSSFPQDPTFLETSTLQE
NLFRLNHLNAEEKYKLTNLLTRFKDIQFHEGDKLSFTNQEKHTINTTHNIPVYSKMYSFQQSYEQEVERQIQEMLEQGII
RESSSPYCSPIWVVPKKLDASGQQKLRIVIDYRKLNEITINDRYPMPNIDEILGKLGRSNYFTTIDLAKGFHQIEMDSES
IAKTAFSTKYGHYEYTRMPFGLKNAPATFQRCMNNLLRPLLNKNCLVYLDDIIVFSTSLEEHLQSLEAVFEKLSQANLKL
QLDKCEFLRQETTFLGHVITKDGIKPNPEKIKAIQDYPLPSKPKEIKAFLGITGYYRKFIPNFSDIAKPLTKCLKKGVKI
DTKHKEYIEAFQKLKLLISEDPILKIPNFERKFVLTTDASNVALGAVLSQDGHPISYISRTLNEHEVNYSAIEKELLAIV
WATKTFRHYLLGRHCEIASDHQPLCWLHKLKEPNSKLTRWKIRLSEYDFDIKYIKGKENHVADALSRIKIEQAFFGESTQ
HSAEEDNSDLIGLSEKAINYHKRQIIFSKGPNSSIEHETYFKKQIIHISYKEMTLEAAKQYLLNHFCSKNSALYIESDAD
FEMIQNAYTTTMNPKCTKIFRSLVLLKNIPTYASFKELILNTHEKLLHPGIQKTVKLFSENYYFPNSQLLIQNIINECQV
CNLAKTEHRNTEMPMKITPKPEHCRDKFVIDIYSSEGNHYLSCIDIYSKFATLEQIKTKDWVECKNALMRIFNQLGKPKL
LKADRDGAFSSLALKRWLETEEVELQLNTTKTGVADIERLHKTINEKIRIIKNSDDNETKLSKIETILYIYNHKTKHDTT
GQTPAHIFIYAGQPNLDTQNNKEKKINEINKNRTEYNVDTRYRKGPLQKGKLEAPFKLTKNVEQTDEDHYKITNRNRETH
YYKTQFKKQKKTNQLPILQAPCSP
>RLG_scTat_3_1_gag#LTR/Gypsy 49-4253 via tfasty with Gypsy1_OS_gag, 1 frameshift and 1 stopcodon. [Saccharum hybrid cultivar]
MENSPKDGSQIDTDNVIAVTLDDLSEEGRREIERELEEERLASLHRKLADFQKTRNGVVNKVAAPVSSASPSTDVSKAPS
AEEISHLIDVSVASKYGTQMENLTRTMNDSLFGKFDEFKLQFNQDIANSLPRQVRSAVLQARDEHLEKQPVLFENTNSAE
LPNATFTVNASASTVQQPNATLGDNQSGRNYVSNSANNFAPNFAPSASNSAVITSVPQSSTAGNRVVNFNLQQPYYQTAS
YTAPSLPSMGTGVPYGPVSNVYTNVSPQHVPHAQPVLPELQSHNHVVFMPQASSSDPSQNFRDQIANVLRELGLEPKGRA
RAYQKPYLEYVDWTPYPRGFKIPDLVKFTGEDGRSTFEHIGQFLAQISEVGTQDVYKLKLFPLSLSGTAFTWFSSLAPKS
IVTWAQLEQKFHEYFYSGETELRLTDLILVKQKYNESVSEYIRRFRDVKNRCFSLIIAEKDLADIAFSSLLAHIKDRLEG
QEFSDINQVLQKALAQENRAKDVKQYGRFRDNKSKDKEKPTVNVVGCDSDSASDDDVDVCIAEWVQAPKxKPFVCAALKP
TPARREEIKYTFDVSRCDKIFDILLQANLIRLKGGHVIPSLEELAKRAYCKWHNSFSHATNDCNVFRRQVQPAINDVRLT
FTEGTKMKLDSDPFPINMIDFENKKVLIRSDQAESLKGKNVIVDDRAAPRMIKPKNPEGVWKVNEGKKHVPKSRPTVKHL
LDKYASQKGSSVFNRLGGSKRPRSPSGHGFGGQFYRQGNSYAHQPQFPMGSAFWGCAPPMYPQIPPYGFNPWVPHPTGPE
CFYQPGWAAPGSVFGQHVYGKRPRFNQEVRANDAIMVHRGRKNLAFGIVNLHREAEAGSSKGRGSAQSSSPRYNAGNKNF
VGGRKSMWVPAKPGGRTNNSDLRDIAGTRHQTTGPNGSNAVHGLQIGTMVIDKSEVDACAHQGKLVIGLCSCSDQKEVSG
SGDSEARRQQRGGFLQKDVSVELGQQSHSEKAVVPTSIGLHVDSAKASIKPGISPSSTGISKGVAQHCSLANSSNGVARG
MPQANGRLNTQMSVQQNNFYSRSPVFRPRVVALQHKARSSGGTKIRSVEPGTKPKPQWCPEDLTHTQKRRVQRLRALEIR
EEQAEKQRDEWFNKARPMAPVKMTWKEKRITMEEEKSEDDNVFIDENSEIEHDTPAAMDVNMVFALPAEFRAPEVEIAEL
VLGPKSAIFEKPEKPEKHLKPLYIKGHIAGKPIGGMLIDGGAGVNVMPFSVFTKLGRKESELMKTNMRLSGFSGELSEAK
GVIVMELTVGSKTVPTAFFVVDIKGRYNILLGRDWIHANCCIPSTLHQCVIQWVGDDVEVIEADNSACIALTDAPIDWQH
GEMQCLTGRDLSDYDYVAIGRDGFVPIKVQSACVARLNNLSL
>SHAGY_MT#LTR/Gypsy 576-5246 via tfasty with Gypsy1GM, 2 frameshifts and 4 stopcodons  [Medicago truncatula]
TNHTLHHKYLLSITTFPLEPSITNNPLTQLYNRISIxPLSPHNQFQPSFPTPKIQLKPFDGTEPLEWLFQAEQFFSFYNI
TNENRLSLASFYMKGDALSWYKWMYQNHQLFDWPTFSKAVELRFGPSTYENHQAQLFKLRQYSTVADYQTQFEKLGNRVF
GLPPKALLNCFISGLIPEIRHELAVQKPYTISQAIGLAKLIEAKLKDSKTRPNKPYTNQPTQNTTLPPHLPSPKPITTTG
PITSTPPSTQPTQSSKLPIRRISSAQMQERRAxGLCYNCDEKYVMGHRCATGRYLLLILDPTMDDKADETIPDTAILTEP
VDSYFHLSPQALTGQPSPKSLKALKFKGSIHGLSVSVLIDTGSTHNILQPRTATHLHIPHSPTQPLSVMVGNGSYIDCAG
FCSSVPISLQNTLFHIPFHLFPIEGADVVLGLDWLTTLDPFIPSISFIHNNxPITLQGDASNQPTQATFHHICQLLHKDS
IASIHVLSCSPTTNHEHTHAKLAVVPSTTPLEIQNLIHTYESMFQTPHGLPPTRPHDHRIPLQPNTSPINVKPYRYPHSQ
KEAMSTIIREMQDEGIITPSNSPYSSPVLLVRKKYGTWRFCVDYRALNVVTIRDRFPIPTIDELLDELGSANVLTKLDLR
SGYHQIRVMPNDVHKTAFRTFDGHYEFLVMPFGLSNAPSTFQSAMNDLFRPFLRKFVLVFFDDILIFGNSLVEHFSHLKL
VLDLLSQNQFFAKLSKCVFAVPQVDYLGHVISASGVGHDPEKINSILDWLIPHSLTALREFLGLTGFYRIFVRNYATIAA
PLTDLLKGSKFTWNTLAETAFTEFKIAMTTTPVLSLPDFSKPFTLETDASAVAIGAVLSQDGHLLAFFSRKMCPRMQQAS
VYVRELFAITEAVKKWRQYLVGRHFNIYADQKSLKELLVQTIQTPEQQKWAAKLQGFSFSIHYKPGKTNLVADALSRKHA
DTTPLLLLTISSAIPDLLQNLRKFYNQTEGKQLVYDLFQPEDPAAQYAFREGLLFFKDRIYIPDLPDWRAAIISEFHNAP
SAGHSGSKPTPSRLATTFLWPGAHTNVKEWVKKCSVCQQNKYLPSKKQGLLQPLETPNQVWEDLSIDFITHLPNSHGHTT
VWVICDRLSKFVHFIALPTRFGAKDLALRFSIDICKLHGIPKSIVSDRAPIFLSTFxKELFRVQGTTLKFSLAYHPETDG
QTEVVNRSLETYLRCFASDHPRQWFKFLHLAEYWFNTSFHSAIRMTPFEALYGRPPPSIRNYVRGHTTVLKLDTTLAHIE
HILHTIKENLERSKQRMGTLANQKRKDCTFVVGQLVWLRLQLYRQHTVHRRTSPKLAKRYYGPFLILRRIGPVAYELDLP
PSSRIHPVIHVSQLREYHGQDPDGHFRPIPPEVANNLFNESPENNHQDTAEGRQEPETGKEGQEKEKVISQMREKEPGIE
KVNYSSTNVSSAVFKQGQMTLVPLDASQPQDACSTTQDKYPPLNPITTVGNQTLTDAPASPKITPSFIQSPPSDPTTNHI
NGQHTTPCQLTESHRAPSHTEEHKPNLEVKVSSGPDS
>SZ-50_p2#LTR/Gypsy #ReverseORF 8150-9229 R) [Oryza sativa]
MIGDVSVVEYSQMLTRQATGRANRVFNGELPPRANPHKAGDEAGPSRKRPRGQVKLAPRKRRAPVSSDSDADDKDGEELD
GEEGEGEEEETETAVENAAVEVTEGRAETPGYTPTPSPGHNETGVESNSSPLRQKDLDVAKALVAFSSGKAAKGGPVKKA
AKKKGLVDIARVFSDDESSDGTLTSPAGRSLDLSAAPAPPLGGTGAGGSTAAGASASAERIVTAAAKVFGSPPRQPIASP
LTEAKGKRAAGETSASEYSLAVPRFAPGDFETRADLLPFVEGVSNLIMPAGTPSLFTELNEFNEGCSAIKSLVVRVRLSP
PFSLFLSLLLLTLALFAALVLRPDPCGSLFNRANRASPP
>Skipper_gag#LTR/Gypsy 742-2859 (1 stopcodon) [Dictyostelium discoideum]
MSSTTTPSKKAIRKAKVSSTAKRATEVTTASDDAITVQVKSKKTLRPTEVDDEIYSTESTDVSDVEVREKVPKKSKTNSI
EAKTIDALKNAATAVIFMNLFTIHCSQNGVEPTLKTIMDNGAASNELFQLLQPTHNESVKNNDKIEGETLKKLIHRNFRS
KTLVPFKTDYEAANTKVVEAINHRNCYSAQDVIKNIEAIMSYHNVINPVYLIHGTAEVQLEYLRSILDNNILALLKMVVP
DWLQTDVAIKLNTQTDITECREAITELVLNNADKFSRRRPSDSASNNDEKFPLKKNHATPNHNSHNRNSFDAQADKIRAA
ILPEIRKDSKVDLKKIRSSFIVYRQSKGYCLNCGKSNHSTSTCRIDPVDAKANPGPSAKKQQxLDEGDESKSKILNKNYK
ISQYHHLEDNDYPVNKDSLYTLNSFYNQNIVKQLHQQSQQHDVHKNINKLKEYVKDSYGIKLVPDTTVPIPKAVESEMKY
KPQKIEFNTPTELTNVQDKNYTVNIFNRPKILNSSKELINDEEDELLYTIKFDKETNKPIISLLHSTGTSDTALIPTLKC
LIVPNRENMDKPKIIINSHSKGKQFKLILDTGSNVSLINKRLISKDMKNHVHKTKAKINFPLLDVKEEFVEQINIQVNNE
IHNFFIIELDIIDVLFGNDILKDSIINQKDKIIKLNNSTYKINYQQSNQLHCNVKAPRKHVTVSQ
>RIRE3_gagpol#LTR/Gypsy 1241-5760 via tfasty with RETROSAT2_gagpol, 1 frameshift and 1 stopcodon.  [Oryza sativa]
MVTTRRTANTGDGNQPEGSNINNHGSPPPPPPPPPPPDTNAILTQILAQQANMMAAFLHHIQNPPRHNAPPPPPPPQHSE
LAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCNDKEKVIFATHQLQGPASLWWDYFQATQPEGQPITWARFTAAF
RRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVGLVSGDYPDFQRLVD
KSIRLEAKHKELESHKRRLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQQSRPAPRPQFVVRVPQPQQQQNQQGTRA
PRPPTPAVQPVQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNNGGKDVIRGRVNHVTAEDVLTTPDFIVG
TFLVHSIPATILFDSGASHSFISMPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNL
DVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFAPPTSVRSSELHxIGLSEIPIVREFGDVFPEELPGMPPQREIEF
RIDLAPGTTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPL
PRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVV
VFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQV
RSFLGLAGYYRSCIENFSKIARPMTQLLKKEEKFVWSPQCEKAFKTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCV
LMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIKRHYLIGNRCEIYINHKFLKYIFTQSDLNLRQRRWLELIKDY
NVGIHYHPGKANVVADALSRKSHCNTLNVRGIPPELNQQMEALNLSIVGHGFLAALEAKPTLLDQIREAQKNDPDMHGLI
KNMKQGKAAGFTEDEHGTLWNGKRVCVPDNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCD
VCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARI
VSLHGVPKKIVSDKGSQFTSHFWKKLQEELGTRLNFSTGYHPQTDGQTERLNQILEDIVRACVLDFGKTWDKSLPYAEFS
YNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREAEAKVRIIRDNLKVAQSRQKGYADNRRRDLEFAVDD
FVYLRVTPLRGVHRFQTKGKLAPRYVGPFRIVARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVRE
DLTYVERPVKILDTMERRTRNRIIRFCKVQWSNHAEEEATWEREDELKTAHPDLFASSSESRGRDSV
>RAM4_p4#LTR/Gypsy 10420-12441 R [Medicago truncatula]
MVRIEGSSSQSMKQQETNANLSINTQFMEEPDVKEAKDRIWKSQVIIPCSNSSHAYLGPLPDDSDDQKKLAPVFPCNETH
SPLIFSKGPYDLSFLKSKFRTEPKIENNEKYLEWLEKLEKIKGPFWKEMGIFDLIQLSRQGPKYHNEMIIAALHFWNPST
NSLHLKCGMLTPTLLDVAGLVGLKPIGQIFDPDTHSSETSFDFSRPAYGNFIIDHYDTSSTTVSDQEHIAFLTYWLSMYI
FCSRSIQIPKKFTTLAIQLHEGRDICLSKLILGSLYESLNHAVSSIKNFRAGSSLIIPGPVWLFQLWLLATFRTKLAVHL
PPALSKAYDNRSIEGLGLAMLQYGNRSSPDLFAVAFNAFLSCISFTPSMAPFTTRSRGPSWFTSKFPSDSTEEEVDINVI
WEAYLTPTFLSSRVTAGSPYGVYSYQPNHVARQFGLVQIKPNSLHKCLDDLRQPLIEHAWRSILRQAQRQKLIFEPKLFT
SSYACTEVFYRWWQCYFKHQSDRVDPDSLLPELILAFHTVQKKSKKNKGTHIREIQAFQNFFQTVYDPLHLKRTVHYAAK
TLNDKIHDRIPSMSFPPFTPSKYLFALHFRIKFPVLPTSPLALAFRPPYPKWLFCDSLMGMKQRFVKREKDRVTATKHNL
YTYRWHLHLNDPYIRILSEMGLGNEPFRFFLFS
>QUASIMODO_env#LTR/Gypsy 4477-6033 [Drosophila fruit fly genus]
MRNITKKQIEEEKLNIINLNLKNKRELIKVNTIPAQLPKIKWGPIKQLFIITLIICFIRAVRGQSLEVNPIQAKNGYLIF
KTGSINIPINYEYHYLSVNLTKTEQTFANLIKQAEEYGTIAQIQYLTEKLDREMNGIRIIKRNKRGLINIIGTAYKYLFG
TLDQNDKEELEQKIYDLSQHSIQINELNEVIEVVNRGIEVINHLSAISEGDRRLELLVFNLQQFTEYIEDIELGMQLTRL
GIFNPKLLRHDPLSHVNSEKLLNIKTSTWLKSDANEILIISHIPRDIIKTALFNIVPYPDKDNNILIENVNDKYYIQDNQ
VYKQNSGKPIINKCITGILNQIPTECRYSKTHNNIGITYVEPNIILTWKLSKIVLNQNCIINREIIIEGDNIIKAFNCSV
QIENILITSTTLDYTQTVYINNNVTKLEPLSYLNAKEIIKEHTNTYNTLQIITLTILAIIILTLILYFIYKYKGIPKKLI
VKYKKENPKQIEQQNNTTTENINTVLDTNPVLYPRISA
>RETROSAT3_gagpol#LTR/Gypsy 802-5379  [Oryza sativa]
METRNGSRDSNNASGSEEPINGARANGASDNSPSPPPENPTIAQVLDNQTQMMTMMMQQMQQQYHQVLQQVQQQAQLQQQ
NLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASIWWDNYMVTRPAG
AEVTWTEFRHSFNKAQVPEGIVGQKKREFRSLQQGTRTVIEYLHEFNRLARYAPEDVRTDAEKQEKFMSGLDDELTNQLI
SRDYEDFEKLVDKAIRQEEQCNKMNRKRKAAQFRTPQGKCQKPRYTMGRHGGPSTMIIRQHRPYHPGSFNKTHHSDSHNN
SGSHSSLNPTPSPLMIPAQSDQPALPEQPKRLVEKPELCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPE
VILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGSIFPANLILLE
SKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGEVVIFQSPVPQKPGISLNQAAGEEQEVAVEKTTKKLEDIPIVREYL
EVFPDDLTTMPPKRDIEFRIDLVPGTAPIHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRM
CVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAF
FMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQFLGHIVNAQGVAVDP
ANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQ
TKDFQVYCDASRQGLGCVLMQDGKVVSYASRQMRPHEGNYPTHDLELAAVVHALKIWRHYLISNRCEVYTDHKSLKYIFT
QADLNLRQRRWLELIKDYDMGIHYHPGKANVVADALSRKSYCNVAWVEQLCCEVQRDLEHLNLGIVEHGFVAALEAQPTL
VEQVRIAQASDPEIAELKKNMRVGKARGFVEDEQGTIWMGERLCVPENKELKDLILTEAHQTQYSIHPGSTKMYQDLKEN
FWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFVTGLPRTSSGHDSIWVVVDRLTKVAHFIP
VHTTYSGKKLAELYLARIMCLHGVPKKIVSDRGSQFTSKFWQKLQEELGTRLNFSTAYHPQTDGQTERVNQILEDMLRAC
ALDFGGAWDKSLPYAEFSYNNSYQASLQMAPFEALYGRRCRTPLFWDQTGERQLFGTEVLNEAEEKVRAVRERLRIAQSR
QKSYADNRRRELVFQVGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPYRILERRGEVAYQLELPSNMLGIHNVFHVSQLKK
CLRVPEEQASPDQIEIQEDLTYVEKPTRILETSERKTRNKVIRFCKVQWSHHSEEEATWEREDELKATHPHLFASSSESR
GRDSV
>RETROSAT5_p1#LTR/Gypsy 135-1127 (similar to Helitron4_OS_p2) [Oryza sativa]
MQDAAREAFLRLSSIHRAELVSTEFAHHPFREEGNSVCTVQDTPCCYNPMVTRLSRWAEAVDDYYEEALLEIDDHQRRVG
ELETEVTDLTAQQLQLEEEHQAWGSEIDSLKAQLQVHGDQFQQLSDQYNDRRGMMDTLEEQLRESQEHVCQLEEQLRAAK
ISTSGASTSTAVGRDRYFFLTPPYPPAFHALLGEASMLATESAPYLVDPTATQPPVPELVHTPLIPTPSPQLGSSLETPI
QVDSETEGTDTEPEIEPDITDPSEDEAPVPRITFLGGPRTLSTARKSTRPPGKRPKPDPEATTSEPWGLRFARASDHPLP
APGSCGWLED
>RETROSAT4_gagpol#LTR/Gypsy 852-5128 via tfasty with RIRE8A_gagpol, 1 frameshift [Oryza sativa]
MASRPRRTARAPARFGFEDGRVELEANHESSNEQSHRSNRSHRTVSRNAEVEQPHRSSRSHRTVSRDAEMEQSHRSHHTA
SHNSGEERLPSPPHVENNMQHLMAVQTQILQGLTTAIASFQHNAHGNGHPHMGNNRSKLTDFLRSRPPEFSQTVEPVEAD
DWLKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWLENYCNAHPEPTNISWDEFATAFRAAHVPESTIDMKKEEFNRLKQ
GNSSVNEYLSQFNKLARYAPEEVDTDKKKIRKFLKGIAVGMRLQLLAHDFPTFQHMINKALLLEDARKEATEEYKKRKSN
HQGNSSRGALRPRYGQPMQYHQSVTQANRQPGYAPRPQMNRPAPQPQQRAPSGNTAPNSVTSFKSPQGPSAVQCFRCNQM
GHYARQCPQNPTNTNSGHANGSTARTPTPAAAQFRPSSQASGQGSRASNHFGRGRVNHIQAETAQDAPDVVMGMFSVNSV
PAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMD
WLAKHKGQIDCAEKSITLQGPGGKQVRFTPNTPTVSRSILTCLQVTSLESVPIVCEYPDVFPEELTSMPPDREIEFAIEL
APGTAPIAKRPYRMAANELAEVKRQIEELESKGYVRPISSPWGAPVLLVKKNDGSERMVIDYRALNEVTIKNKYPLPRID
DLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFID
DILIYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKCEFWLDRVAFLGHVISSNGVEVDPSKVEAVLAWNPPKIVSEIRSFL
GLAGYYRRFIEGFSKLARPMTELLKKEKKFQWSVACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGIGCVLMQE
RKVVAYASRQLRPHEANYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGI
HYHPGKANVVADALSRKAYCNVAQIRPDQDHLCRELEKLRLTVVQSGVPASLTVQPTLESQIREAQKDDEGIKELIKRIQ
EKKDTNFSIDDQGTVWCGQRICVPTKKELRDLILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQR
VKAEHQRPAGLLQPLPIPEWKWEEIGMDFITGLARTPSGYDSIWVIVDRLTKSAHFVPVKTTYDGKKLAELYMTHVVCRF
GCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMVRACALDFKGTWDRCLPYAEFSYNNS
YQASIQMSPNEAMFRRKCRTPLCWNEVGEALVFGPDILKSAEEQVKLI
>GB:AAA17752 reverse transcriptase (LINE-element)  [Bombyx mori]
MAYISRIKPLSVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIANYNMVRNDRLSARGGGTVIYYR
RALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILGGDLNCKHIRWNSHTTTPN
GRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTV
VDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIR
AYDRYPTTENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEK
AELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGVSYRVIKLLPVQ
LIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNDPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFG
FRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVE
GTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDI
NPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMIC
KRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSAS
ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNTRGRLRDPGNRTRRTRQRGRRAT
>TRA1_COXBU/213-300 transposon family T20 Pfam:PF02371
QRVQSIPGVGYLTALSVYASVGDIHQFHRSRQLSAFIGLVPRQHSSGNKEVLLGISKRGNVMLRTLLIHGARALLRHVKN
KTDKKSLW
>O68780_YERPE/226-313 transposon family T20 Pfam:PF02371
QRLMELKGVGPTTACALVASIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGADK
RTDSFSRW
>P77472_ENTAE/210-297 transposon family T20 Pfam:PF02371
QRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVPRQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQKLEH
QSGKLADW
>O68059_RHOCA/293-378 transposon family T20 Pfam:PF02371
QLLRTIPGIGPVNALAVLAEAGDLRRFRHHRQFLKFCGMDLATVQSGVFRGRSKISKYGNARLRRTLWLASQAAVLKPAN
SFRDKF
>Y4QE_RHISN/244-329 transposon family T20 Pfam:PF02371
CALRALRGVDLIAAVTFATEVGDAGRFESPRQLMGYLGLVPGERSTGETTKRIGITKAGNSRVRTLLVECAWTYRYPPRI
GKRKLY
>Q13539_HUMAN/166-248 transposon family T1 Pfam:PF01359
QYDPEDKAQSKQWLPRGGSGPVKAKADWSRAKVMATVFWDAQGILLVDFLEGQRTITSAYYESVLRKLAKALAEKRPGKL
HQR
>Q23704_CTELI/37-117 transposon family T1 Pfam:PF01359
HYENPKRKKAWVKPGEPGPSQPKRDIHCAKVMLCIWWDMKGVVYYELLQPGETMNGELYRRQLMRLKQALARTRPEWENR
H
>Q17312_CERCA/154-234 transposon family T1 Pfam:PF01359
LYNNVQRKRTWKQAHEGAEPMSKGGLHPMMVLLCIWWDIRGVIYFELLPAGETITANKYCQQLVELKKAIDEKRPIFANR
K
>Q24691_DUGTI/156-236 transposon family T1 Pfam:PF01359
MYDNRKRSSQWLDPDEPPKHCPKRKVHQKKLMVTVWWSSYGVIHYDFMVPGTSITSDVYCSQLDDMMEKLAIKQPKMFNR
L
>O18595_9DIPT/37-117 transposon family T1 Pfam:PF01359
LYDNRRRSAQWLDADEAPQHFPKPKLHQKKIMVTVWWSAVGLIHHSFLNPGETITAEKYCQQIDEMHQRLQQKQPALVNR
K
>O15977_ATTAT/156-236 transposon family T1 Pfam:PF01359
LYDNRKRSSQWLNPGEPAKSCPKRKLTQKKLLVSVWWTSAGVVHYSFLKSGLTITADVYCQQLQVMMEKLAAKQPRLINR
S
>P72078_NEIGO/194-277 transposon family T20 Pfam:PF02371
KRLETIPAIGRMTAAVLFHHLTSSKFETSNKFAAFAGLSPQQKESGTSVRGKGKLTKFGNRKLRAVLFMPAMVAYRIRAF
PDFI
>Q9SI94_ARATH/268-340 transposon family T23 Pfam:PF03017
SNDQRKRLLLDCNGSGEIVAEGRICSTNPEDKVHFVPLGPDASKVWVQVLKIGSAKVWRPNSEVHFVGDALGT
>O82334_ARATH/463-535 transposon family T23 Pfam:PF03017
QGSQPKCILMDWAGTDATVVEGCIISSDPDEIVNGSRLGPTDVKVLIDTAIVPEAYLWRPAINMEIMEKAVGQ
>Q9ZQJ1_ARATH/198-347 transposon family T24 Pfam:PF03004
DPDVWAGLVKFWKDPKSELKSINSRNARYHEPDGLGIHKHRSGHTSYKARARKRCEMTGETCPDFLVLLDETHRKSDGTF
IDRKSEEVYKEVSSRIREEESQLCSGDTTESTASGGYLLRLRTRFMLSLLQVAPKKKGRVYGAGSLQIEA
>Q9LG68_ORYSA/1-181 transposon family T28 Pfam:PF04195
MARGSAPLDGSVLPPSRIVSERQAGLPRRFMPESATGREVVALGEGRPTPHYPGRSVFFLSFAMAGLVPPFSSFFMDILE
FYDLQMAHLTPNAVMMLAIFAHLCEMFIGVRPSLWLFQWFFTVQLVSPPLVVGGCYFQPRGQVLNRYIPCVLHKKWDDWK
SDWFYTPLADEARLRLPSQPP
>O68644_PSEPU/129-326 transposon family T25 Pfam:PF03050
YDILGTKTTYRLAQRTSSYVVLQVERPVFRRKGSDKPVTTPAPSNVLDNSLADVSLLAGLMVDKFQFHLPLYRQHQRIQQ
AGITLSRSTLTNLIKRSIDLLRPIVDAQTDNVLRSRVLAMDETPIKAGHQGRAGPQKGKMKSGWFWPLYGDADEVVFTYS
NSRGRAHIEQVLNEQFSGTLISDGYAAYARYAAAQQNI
>O00369_HUMAN/1-337 transposon family T22 Pfam:PF02994
MGKKQNRKTGNSKTQSASPPPKERSSSPATEQSWMENDFDELREEGFRRSNYSELREDIQTKGKEVENFEKNLEECITRI
SNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSAMEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRL
IGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRV
TLKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTDRQMLRDFVTTRPALKELLKEA
LNMERNNRYQPLQNHAK
>Q9S9R8_ARATH/273-500 transposon family T21 Pfam:PF02992
AAMRWHAEHQSKEGEMNHLSDAAEWRYFQGLHPEFAEEPRNVYLGLCTDGFNPFGMSRNHSLWPVILTPYNLPPGMCMNT
EYLFLTILNSGPNHPRASLDVFLQPLIEELKEFWSTGVDAYDVSLSQNFNLKAVLLWTISDFPAYNMLLGWTTHGKLSCP
VCMESTKSFYLPNGRKTCWFDCHRRFLPHGHPSRRNRKDFLKGRDASSEYPPESLTGEQVYYERLASV
>TRA3_LEPBO/224-309 transposon family T20 Pfam:PF02371
GILRCFRGVDYLTAMFLLCEVNDFKPIQNGRFVHEFSWTCSWRIFQRFQKKTNRDYVKLEVPRLRRILTEAAWQHRFPGT
GSKIIT
>Q9ST08_BRACM/299-526 transposon family T21 Pfam:PF02992
ANMRWHAEHTQTDGEMTHPSDARAWKHFNKVHPDFASNSRNVYLGLCTDGFNPFGMSGRQYSLWPVFLTPYNLPPEMCMQ
RELLFLTILIPGPNHPKRSLDVFLQPLIKELKDLWSTGVRTYDCSTKTNFTMRAMLLWTISDFPAYGMLSGWTTHGRLAC
PYCNGTTDAFQLKNGRKTSWFDCHRRFLPIGHPYRRNKNLFRHKRVVRDTSPPYLTGEQIEAQIDYYG
>Q9ZUL2_ARATH/163-388 transposon family T21 Pfam:PF02992
RDLRWHFHNKSTDGKLCHPVDSVTWDQMNAKYPLFASEERNLRLGLSTNGFNPFNMKNTRYSCWPVLLVNYNLPPDLCMK
KENIMLTLLIPGSQQPGNSIDVYLEPLIDDLCHLWDNGEWTYDAFSKSSFTLKAMLLWTISDFPAYGNLAGCKVKGKMAC
LLCGKHTESMWLKFSRKHVYMGHRMGLPPSHRFRNKKSWFDGKAEHRRKSRILSGLEISHNLKNFQ
>Q41865_MAIZE/271-500 transposon family T21 Pfam:PF02992
KQMRWHKEGDRQGQDPDVMVHPSDGEAWQALDRFDPEFARDPRSVRLGLSTDGFTPYSNNSTSYSCWPVFMMPYNLPPNK
CMKEEVMFLALIVPGPKDPVTKINVFMEPLIEELKMLWQGVEAYDSHLKCCFTLRAAYLWSIHDLLAYGIFSGWCVHGIL
RCPICMGDSQAYRLEHGKKETFFDVHRRLLPYNHPFRKDTKSFRKGKRVRDGPPKRQTGENIMRQHRDLK
>PITG_04322 (gypsy) polyprotein [Phytophthora infestans]
MVKMSSCLVAMQLELLVWSDGSDDDDIDDDPAVSRKDDDEIKEAVEAMIARASDEGFPSERVDRLRTVIYMYDIWRVNLG
DDPPAKVPPLKIRLKSGAKPYKTKARKYPPELQRFLEDFNNTLESLGWVYENPDARWACPALPVKKAGGANEFRQTTDYK
PTNAQVEPLVGTMPNLDVDLERVAGSLFFGLFDFIKGYWQLPLDESSQEILSYMTHRKIYTPRRVPQGCSDAALYFQATM
ERCFTSLLYYHLLVWIDDLLLYAKTLDEYLDKLAELFSLVNELGFKLSATKSSVFKKQVKWCGKLIDGSGVRHDPERIGA
LRALPYPSTAGELQQFICSTNWMRTSIIDYGRLVRPLQEKFDSVMAHTSKRTKRVASGIPIMLSAAELEAFDKLKDALAG
SAMLASPKMEAETILVTDASDVGWSVIVTQVIDWKAQIPIHEQEHELLVCMGGTFTVAQRNWSVIEKEAYPIITACDKLS
YLLMRPKGFRMYCDHRNLIHVFAPAQEIKKHVRGKLLRCSMKLMEYRFSIEHIEGVKNVWADMISRWAGCLHPNDVAMKR
IRQKRARPDNKETKDADRGEDRGGECQPKPPPIRPFSDDSFEWPDVAAILASQKQHEAARPRGISQRNDGLWAKDECIWI
PSEDRSIVQRLLVVDHCGSQGHRGRDSLMEIMQRRFSIAKLRERVDNFLRGCLMCHHVKGGRIVHRPWAETFRSNERNEA
LHWDYLHLGKSFGNYAYLLVMKDDATHYCELVPCIVPTSVVAAQAIMDWHSRFGAPGLWISDNGSHFKNEVVSEVSKRLN
SNQKFSLAYSPWINGSVERLNKDIIQVLRAMCLEYQVDIKDWTYFVAALQANLNHTPVPSLGNHAPVELFCVLPAVSPLI
FYLNEDQKRLVDLGELPDHIETKLEALRESAQLMHKKVIDARSKQTKRNQRKPKHTLKPNFDEGDFVLRSRVDQKHSDKL
LVTWIGPYQVVKAEENSFRVRHLVTGAEQDVHSSRLEFHADKSFEVTEEIREHVASQGIILTVASLLEHRWNTSKHEFEI
LVSWKGLEPIDDSWESMTSLYKDIPVMVKNYSASRGNRAFQDAVAAMT
>PITG_11412 DDE transposase [Phytophthora infestans]
MTPAPIVQMTRRPKNKNKAKLRGLLRLGEASSVVALAAELGVHRTTMYRWMWQKNVLASAAPNKYYASVPSRQNLYVKHP
NLEQRRITHKGRKIRSDMELVASKFSHSIQYAIEECGALSYATGPSEYVSVFNMDQTAIYIDMNGKTTIDFVGTPTVDVR
QGSEVNGFRCSVFLAASATGVKLPPLVVFAGIPGGPISQDVWNPSFGHSSCEYTVQKKAFCNEAVMQEWIQRIWKPSVDG
CRLLLLDSLKVHNMNSVRTVLEEDYCTQVEFVPPGITGLAQPMDVAVMKPFKNYVRNSYLAYHIDHEFPKTPQEKRQLIS
RFVAEGWVSISPATIRKGFAKSGILPTGPRYIEDRFRVPTYAEEEAPIIEVDQEE
>Q9S4I4_RHILE/98-268 transposon family T11 Pfam:PF01609
LVMEARDLEGREASPSAGVIDSQSVKTTESGGISGYDAGKKIKGRKRHIVVDTLGLMVGLMVHSADIQDRDGAPAVLKTI
LKRWPWLRHIFADGGYAGPKLRGALQKIAAFTLQIVKRTDKAKGFEVLPRRWVVERTFAWLGRCRRLAKDWEKSVASAEA
WVTIAHIRVLT
>Q9RI92_STRCO/102-272 transposon family T11 Pfam:PF01609
LLAELNAAARLDRSRCVVDSPRQGAKGGQHTGPSPVDRGRAGSKHHLITDGHGTPLAVLLTGGNRNDVTQLLPLLDAIPP
VRGPVGRPRRKPDSLFADRGYDHDIYRDQARTRGIVPAIARRGTLHGAALGTYRWVVERSLAWLHGFRRLRIRWERRADI
HEALLRLACCL
>Q48339_ACEXY/99-269 transposon family T11 Pfam:PF01609
LVMSLREIEGREASPSAGVIDSQSVKTTESGGLSGYDAGKKVKGRKRHIVTDTCGFLIFLLVHAADIQDRDGAVDVLAAI
RRRFPWLRHIFADGGYAGEKLRSALASMGKWTVEIIRRSDTVKGFQILPRRWVVERTFAWLGRCRRLAKDWEQSIASSTA
WTLIASIRMLT
>Q8W5L1_ORYSA/618-700 (hAT) hAT dimerisation domain, hATC (PF05699)
EVDKYLSEDNEPDTPKFDILKWWKANSTRFPILSHLACDLLAIPITSVASESAFSAGGRTLDDFRTSLTPRMVERLVCAN
DWL
>Pi_piggy2 (piggyBac) consensus core protein of piggyBac transposase [Phytophthora infestans] 
GGVDVHDQLRLQSYSLQMSTRFTKYYKSLFLGFLDLALVNAYLTHKEAAKIKGMVAMKRSEWFAVLQNQLLQLKAEDFAG
VQATPPPASQKRRRTPVRLTHALQQSEDWVTVSGVQKRRQRSCKVCALLRTEKKKSFATTFFCERCSVDNAKCWLCNRIR
REYKGVAKTCFEIWHDDFDAGQAIPPNLGKRVVLRRPGQKAGQRKKTRRELRLGHDAGSDDGNGGDNENGSD
>Pi_model.supercont1.13.4.1 1432 novel transposase Pi-A IRs plus 9 bp TSD
MRRWFKAFPEVLLIDATHSTNDSRYKLFSFMIHDVYGHGQYVQHSLMENESAECLTDAIESFKFSNPSWEEIRVIVIDKD
MGELSLLEAHFPNVKVILCHFHLKKYIRSEMSKRKYGGPSSFDMDQVEDAVEMMRTATTSEDYTRYLKYLYFLLDNVQLR
STDAIPDLKHPFLRYFMRNWDQQKERWALYARSDVPHLRNHTNIRLEASWGHLKGILKPEMPLDECVDTLIFLQAVAEMI
YSKNMTAVGYMRYQGADKELERLSQEVSPHAYRQIEQQYWIAKDRATHYEVTEVTPNMFTVSCGSDNNAYHVDTSVYRCS
CVFMRTTLLSCRHVMYWRLSNGKNVIPIRHIAQRWRLSCKLNQPAEEEDAPQDQIARKSFQIRESMMVSSKHKVLNGTTK
FSTACRRGTQIADIMSRNGTAVFNEMLAALDK
>PITT_10494.1 (gypsy-like) polyprotein [Phytophthora infestans] 
KKDGEVRFCIDYRALNKVTKKDVYPLPRIDETLEVLGGAVLFTTLDLKTSYWQIRVAEADRPKTAFTTKQGLYQFVRMPF
GLANAPSTFQRMMNSVLRGLTWLTCLVYLDDIVAFTRGGIERHVVEVACVLERLAAAGLTLKLKKCVFATRKMEYLGHEL
SSDGVRPLERLVTAVRDFPRPVDAVEVKRFVYLAGYYRRFIEGFGSLMAPMTKLLRKDAEWEWTPAQESAFEYVKMIQTT
KSLLIYPNVELPFRVVTDASKVGLGACLMQDHGNGWQPVAYASKVNSPTEANYGITELECLAVVWSVKLFRSYLDGRTFT
IVTDHAALKWLMTSPSLTGKLHRWALPLQELEFTVEYRPGSTNVVADALSRALAVVAAAVGRRRRSRQGAASVVVVGTRN
AAAGVVADAVSDARTEMDAVEVRHNLVSIKTPRGRRVVLPPELWPVAFKLHHDSVWAGHLRAPHTYERIAAHYWWPDLHS
EVKLWVRGCQECGSRKAKPREVIPPLRSIRGGDVGDRCALDVAGPLPVAGGGQRYVIAAVEYVTRYAVAKSVKRHTAENV
ARFLMEEVVLKFGVFRELLTDAG
>O01794_CAEEL/7-88 (hAT) hAT dimerisation domain, hATC (PF05699)
EVEVFYDTDNNRKSDPAVFWQNPLNRSKFPLLSQIANRYLTTPASSAESERVFSGAGRVSTKLRRKMSTKSLSKSVFLQQ
NQ
>PI_12590_copiapoly (Copia) polyprotein [Phytophthora infestans]
MSRNLFSVGRFTKDVGPVTFETDGCFAEAKGLNWKLGAREGKGLFKLCMTPVVPDEANAASSKDRKGDTTSYLWHLRLGH
IGHGGLDAIVKKDYGAGINMTSVEQWELCDGCALGKQTRVSYMSKSPNHAKRLLEIVHSDVCGPMQTSTFSGKRYFVTFI
DEYSHFCVVYLLRNKSEVADKFAEFVAFAETQTGKVVKTLRSDNGGEYTSGEMAKFCKRRGIVQKFTPPYTPQLNGVAEQ
MNRTLVECARCMLEHAGLAKSYWGEAVMTAAFLRNRCPTRAISHDKSPHQVWTGKKPLLANLKVFGCHAYVTVQKQKRTK
LDARAVKCRFLGYSDHEKAYRFEEIKSGRVLVSRDAQFMEDVFDGGRRSHDEDDIVELQEEEVTDQEASSEDETMGDTAP
RQEFEPGSKRHQRTQSLEEAVEIPRSKRQSRPQTLEEMSAVASGREEDFEAAYVVDSVGEMPTTFKSAMESSNAAKWKEA
CNSEVDSLRKNKTWSLVPLPQGRKAIGCRWVFRIKENQAGEIERFKARLVAKGFSQKYGIDYEETFAPVAKLTSIRILLS
LAAKYNLTVHQMDVKTAFLNGLLDEDIYMVQPDGYTDEEHPDHVCHLKRSLYGLKQSPQLWNQTIDKFMLELGFKKCEAD
HCIYVKWDAQDMIFVALYVDDLVLASNNDELLKSMKKALSERFDMTDLGRLKYFLGMEIDQDAVAGKVSVRQTKFAKDIL
EKFGMENSNPVKTPQDPGLKLTKAMCEGECNYKETMAKVPYRNAVGCLMYLMVGTRPDLAAAVGVLS
>Q9X6G5_ENTFC/104-283 transposon family T11 Pfam:PF01609
IRYFFIKKLTKGELVGIIDSFPSPLCKPVRNRQAKLLNQIAKVGYNSTKRSYFYGLKIHMIVTKTGFPITYSITNPGVHD
VKVLETLSEEANLPNILGDKGYISHKIHEKLALKGITISVPPRKNMDKSEKLDHSLLGKQRKTVETVFSSLEKLGCQNFN
SRSVKGLESRFESILLAYSV
>Q8YKA0_ANASP/157-251 transposon family T12 Pfam:PF01610
TLGVDDFCFRKCKTYGTALIDLERSRPIALLKDAKAETLTEWLKSHPGVQVVSRDRSKTYESGIRQGAPEAIQVADRFHL
LQNLSQTLHQVFGTH
>Q982K3_RHILO/155-249 transposon family T12 Pfam:PF01610
IIGLDDWSWRKTWRYGTIVVDLERRSVVDILEDRSVESAAHWLRRNPSVEVVSRDRCGLYAQAVREGAPQAIQIADRFHL
VQNLRLAVEEQMSLS
>Q8RFT8_FUSNN/165-266 transposon family T12 Pfam:PF01610
AICIDEFKSVKNIDGAMSFVFADYKSKNIIDIVEDRRLHSLTEYFSRFSLEARNNVKYICMDMYTPYISLVNSIFPNAKI
VLDKFHIVNLVNRAFNQTRISI
>O83028_DEIRA/25-129 transposon family T17 Pfam:PF01797
IWCVKYRHQVLVGEVADGLKDILRDIAAQNGLEVITMEVMPDHVHLLLSATPQQAIPDFVKALKGASARRMFVAYPQLKE
KLWGGNLWNPSYCILTVSENTRAQI
>Q8KSD8_ENTFC/166-265 transposon family T12 Pfam:PF01610
VLMVDEFRSHASIEDKMSFICADGETGKLIDVLPTRKLPRLTSYFLGCTNPEEVEFLVTDMNAAYFQLTKRVLPNAKVVI
DRFHIVKHMNQAFNELRIRE
>TS57_MYCTU/162-261 transposon family T12 Pfam:PF01610
RIGIDEISYKRHHRYLTVVVDHDSGRLVWAAPGHDKATLGLFFDALGAERAAQITHVSADAADWIADVVTERCPDAIQCA
DPFHVVAWATEALDVERRRA
>Q9S1C5_PORGI/103-335 transposon family T11 Pfam:PF01609
LLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALNDWAKYTHTKGAVKLHTLLDFETLLPEYVHISDGKGHDGKMANS
IPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQILVDQRVRLTGVQKQGKYTKPLRH
IALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRNAVEVQIWTALITMLL
>T112_STRAL/87-254 transposon family T11 Pfam:PF01609
LGPMLALQPRKRFAKDTVLIVDGTLVPTRDHTIAERSKNYRYSTNHQVVIDADTRLVVVVGRPLAGNRNDCKAWEESGAK
AAVGKTLTIADGGYPGTGLVIPHRRERGQAGLPDWKEEHNKSHKQVRARVEHVFARMKTWKILRDCRLKGDGVHHAMLGI
ARMHNLAL
>O50197_LACRH/101-364 transposon family T11 Pfam:PF01609
QAQQAIYDQRNSYSKTDHDATFMRVKEDPMQNGQLKPAYNVQIATSNQFITGYRLFQNPTDTRTLQPFIEHLKANNVLGH
TIVADAGYGSESNYRYLEDEFGQHTVLIPYGTMLKENSRKWQSDDRKVMNWDYHEKDDYFINPQNVRFNFNAYRQRTDKY
GFTRDFKEYIAEKYDENHQLISAALTPKGYLKRISVNENWEYFKSKQRELLSAPETGQIYAQRKIDVEPVFGKMKASLHF
NRFSVRGFDKVTKEAGIVILALNI
>Q44224_9NOST/151-252 transposon family T12 Pfam:PF01610
KLGIDEIALVKGKGNYLAILVDLDSHKPIEIVQSRRIEDIREVLVRRGVEILKVKIEEVSIDLWLPYKNLVEELMPNANI
TADRFHVMKQVNDELDTMRKAE
>O69804_STRAG/94-341 transposon family T11 Pfam:PF01609
FEQSLTSLDAVHQLISVDGKTIRGNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDA
MGTQTAIVDTIIKGKADYCLAVKGNQETLYDDIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWLCQN
HPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRGHWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNL
IRKMCLYF
>Pi_helentron_1orf  helentron ORF [Phytophthora infestans] derived from element consensus sequence
MVRATKKTRAMKAAKQAKAALRVIRRIATRIGTTQQHTPNQHAERLNEVETEQMNARLTRHEETKRRNLDSQSLPQSKRR
KRKDRLLDANEAANHVNDNKGMQQDWYKLLRTVTNSCHFTIADFFDAIDAPLTRVCGSCGEVANAYNSKLKLFDPKSIFF
SPLCNAEGECEIVPEGLVGDASNECVRDRLLAGGCSNNKTMIWLCDRCNRSLTTRKTPKFCRSSGFRIGTVPTELAELNR
IESRLVGLGISFTTCVNQYRDGQEFTRGNAVNYWNEPAKMVKELPRPLKECGVVLLKSQSDNTTNYFRVRPDLVRRALCW
LIANNPLYEHIQISEDNLRELDQNINQEIPSIPITDDDVSELRGSVSQLNREKQNCGPSSNGVEGPSEDDVCQKLNPDTH
CMTGQTCSGVRNESESEGKQSHLATTTTSSNGSENETDILENVTESFELEVNQDDQTEMDHILNSIGADSLETKIPIGNM
HRRTHTIDEYKTKQLMQCCFPTLFPDGLGGYHPLEFETRHHEYNLAEYCAHLMKWHDRRYVIHGNFKFFCMNLIQRRQID
GLVRRIRYSETRAEAMELAGCGRTQGESRSSNEKEELSAAMNVLKSLKPYFKVVRGSGLYWSNVREDLMSMIGNRVLPTK
WPTFFLTLSAADTIWPDFARACNPALTLEECRQLSFNERRRYLNENPDISARHFNRRFQAFFDNILCGRSKPLGEIVDHF
WRVEFQQRGSPHIHCLLWVKDAPDVLKLSETDDGRAELADFVDKHISVLTKTLSELSSCPCSACTASESDILALRPPHYG
NKEWNCDLARLVQRVQQHECHAGSTCRKKGNECRFGFPKSLQPRTVIESKTSSDGTPSLKIHLQREVSTINNYSPHLLSC
WRANMDLQLIGNSYGAAEYAGAYVSKAEPDTLRFRRVIAKAIQRSDSNLPYHSILKRVANATLAVREVGAPEAIYILLRN
LPMHSKSRSITKVKVMRHSTRYYRVEPQNLDDLVALASTPEIETIRIEPIEKAYMNRPDNDHFNAMTLATFVETFETIES
IRKVASSDDLYECMNGEGWIKKRKKATVVQKTPWIRPDSSNPTFCFSEVFLYVPWRTLEELPTTDDEAIARFFQAQNSLL
DAELKHESNAKLARQYQLDLIKSARSESSITALPPSEYVFVSNTDGEMLEPEPMGAVETSVNQNKPMEWKAKHTYTSAII
DKARDFLNGSLKPWVKEKKESRSLGTSFCQTGNLKSHYQYPTSDNKNLVNTEKMAESQWIPFAIAMEQSRRRFTCMLDKS
KCKPLQMIINGEGGSGKSWLIRHIVKDMHNVFGEHKATRRKSKRVLLLAHQGTAAFNIKGMTLCSAFSFSSFSKSSFSIP
YKSLTDSKTGPTKLKRLQEEYKDVHLVIIDEFSMISCGMLYWIDKRMREIWPSNSNELFGGRDVYFTGDSAQLDPVVPTS
LSTPLQKISNQVQRRGKEIWDSIETVCMLTSQNRGALDPDWFSALRRLRKKSPTQDDIDLFNSRSVQFVGKPKWMANAKH
IAYKNIDVNDANDHSIVSAHVPIVHLTSQHFVQQKRLTTKRDIPAGTVRALLTDAQTANADHDRVVPNRLKLCVGAPITL
TYNIAQAAGLCNGTNAIVYDFIFVSGSDLPIVLVQVTDPYIGPSLLDEVPNIVPIPPKDVSWGKASSDLRVVRRGIPLRL
AYAMTVHKVQGLTCSCVVFHSNAIPNISFAYVALSRITHRNLIVITQPLTLERLTATPEQLAIFRSEEQRVLKAVAQTTL
AASSVVDRMKAVAQAHNSTITPR
>PITG_19276 IS4-like transposase [Phytophthora infestans] 3bp TSD + IRs
MRPASLPYRERILVPEFRLNILAMSDKEAKDQFRFTVGELHLLARHLKLPNIIRTREGVRTNSLEALTVCLRRLAYPQRW
LDMAGMFGRAPSTLCHIFYFVVEFIDKNLGDMIYWDEERIISNLDRYCAAISAKEPLGIEGVWGFIDGTIRPICRPSKGQ
QAMYNGHKRVHALKFQTVVTPDGLISHLFGPVDGRRHDLFMLNESGFKDVLEKNSNFHNKLIYGDPAYGCTNVFCCPFKG
CRVDVPQHELNKAMSAIRVSVEWSYGEVTKYFSFLDFKRHQQIATTPTATLYKLGVLFTNCITIARGGNNNSKYFSCKPP
TFDEYFCSYQNADQ
>Chapaev-4_HM#DNA/CMC-Chapaev 462-4669 (8 introns predicted by genewise using Chapaev-3B_HM)  [Hydra magnipapillata]
MTEKHQQKLLRVCRICGNLTGKDSLTTASRTERIFNVFKINTKEDCVEVHPPQMCLKCYSTMKNIETRGNKLSKIKPKIW
LKCPTKECMCIYGKVGRKPSPNVGRPGVFKRWTQLNINLFLESLPLPLNKKEISEFNIQLNPHITLCICKVCGRIMHQPV
MIKDCQHSFCSQCIISIIKGKLENEARCPVCLTCIMINSLCSSVHVLEMIEHLYIACKICEKNFIKDKYENHECKKDHLL
NNSSTIVDDLFKVDKSSHIPRNIEDAVLHVIKQKMENSKTTTIEFLSGGPRVRVIIFVKWLNSRNIKTASNFKQRVVANT
WAGNDLVVLNGDFTFQNENNKSVFEIKHAPWAYIDNLPTNIKNLLDILESFKLIKHDGIKNDEIHIKIGGDHGGGSFKMS
YQIVNQDQPNSKSNSIVFSTFEARDYRTNLKVGLSRYTLQVDEIQKMIWQNHNVRVFIFGDYDFLCSVYGITGASGRHCC
LFCDITKESIQLAPISRENGVSQRSLKSLNIDFNRFQSSGGNLKKAKFFNNVINETLFHIPLDQVAVPALHISLGTYLKF
FNMFEDECHLLDIKLAGELALKNNTIGKDDFDKYINMHIQSNLIKSVIEDCDNKITLLQDTISLKVLCEPDRTEEIRKVY
APRILYYDLKKTDKMKELNSLNEANILDKISGPCIQQLDEILKANQVQRQAYHGKCFVGNHVHTMLKVFLQMFYIKYPNL
VDLCNSIPKLISNLGFIDTDVHLLSVNVSQKFKQLFQYYSKCHNLMNSSQSFQENDVQELGRSTWPNASVTPKMHLLETH
VLQFIQKWGLGIGVYGEQGGESLHAEFNNLNRLFCHMKGCSRLKSMVKEHYVRNHPKAKAMKPEIKKKNFF
>Chapaev3-1_ET#DNA/CMC-Chapaev-3 219-1580 [Echinops telfairi]
MYTFLMTFVSQLSTSFPIMHTVLHSDLVPLPPFHELPQLSEDESCMSDIAQGKESGGSDSDFQTTSHSEHFDQNELSDLI
RDLNLSKESSELLASRLKEKNVLQPGTKITFYQRREKDLLPFFTKDNNLVFCNDMGLSEYNPSEWHLFIDSSKRSLKCVL
LNNGNKYGSIPISHSTRMKEEYKAISLVLEKINYQEHQWVVCVDLKMVNFLLGQQSGYTKYPCFLCLWDSRAKHEHWARK
DWPPREYMVVGGQNVINEPLVARDRIILPPLHIKLGLMKQFVKALNKDGSCIEYIAHKLPGLTMEKLKAGIFNGPQIRQL
INDPHFIASMNEIESCAWSSFVLVVKNFLGNKKADNYTQLVEDMLFHFNRLGCNMSVKVHYLHSHLDRFPENLGDLSEEQ
GERFHQDIKTMEARYQGRWDAHMMADYCWNLMRDCPGRSHSRKSYKRSFLCVK
>Chapaev3-1_DA#DNA/CMC-Chapaev-3 910-2640 (One Genscan-predicted intron)  [Drosophila ananassae]
MCKHSLYKFCFVCGSFILKKTSMKKLTKNIILAYKHYFGFDAKFIDKPWTPKSVCAACFCKLIQFGNGKKVYLPFGKPVE
WRNPIDHVTDCYFCLTKVQGGKHFKVIYPDVQSVTKAAPHSSLYPKREPPAPKTTASDPLEELCSDRSSESDLENKDYEP
KLMNQSELNDLCRDLNLSKNKSELLASRLQEKKYLHPKTGVTYYRNRGKPFEQFFSKTEEFCFCNNVNALFSAFGEKHNA
NEWRLFIDGSKYSVKAVLLHQGNKKPSIPVGHSTIAKETYGTMKQLLELIDYNSYKWKICCDLKVVAILTGLQGGYTKYC
CFLCLWDSRANTKHYSSHDWPRREQFVVGNNNVVAKPLVDIKNVIIPPLHVKLGLMKNFVRALAKDPESKGLKYLRTKFP
KLSSEKIKAGIFVGPQIRTLFKDENFMQSLNHIEAGAWAAFRDVVEGFLGNKKSHNARELIHKMMEKFQEIGARMSLKMH
FLHNHFDAFPENLGAESDEQGERFHQDLSAIEKRYEGFWDKGMMGDYCWMQVREEKIDNKRKNLSDKCFFRPNL
>gi|113460470|ref|YP_718532.1| IS1016C2 transposase [Haemophilus somnus 129PT]
MKITHCKLKKSIQKKLLEFFVLEVTARSAANILGINPNSSALFYRKIREVISYHLALEADDVFDGQIELDESYFGGHRKG
KRGRGATGKVAVFGLLKRQGKVFTVVVENTKTETIMPVITRKIKPDSWVYTDTYRSYDALDVSQFHHERINHSELFAVKE
NHINGIENFWSQAKRILRKYNGIDRKNFPLFLKECEFRFNFGTPKEQLKTLRKWCGI
>LCRS_YERPS/1-80 transposon family T8 Pfam:PF01527
MKKARFTETQILRVLKEVEGGRHVKDVCRENGGSEASYYNWKSKYGGMESSDIKRMKEREEENRRLKQMYASLSLDHEIL
>Q51572_PSEAE/2-86 transposon family T8 Pfam:PF01527
SKQRRTFSAEFKREAAALVLDQGYSHIDACRSLGVVDSALRRWVKQLQAERQGVTPKSKALTPEQQKIQELEARINRLER
EKAIL
>O50654_BURGL/7-97 transposon family T8 Pfam:PF01527
PERRRRWTAEQKLAMVRESFEPGKSVSMVARQHGVNPNQLFHWRKLYQDGSLSAVKAGEEVVPASELADALKQIRELQRM
LGKKTMENEIL
>O68995_MYCAV/69-168 transposon family T9 Pfam:PF01548
LTGAGYQVYAVNPLAVARYRDRHAVSGAKSDAADAKLLADLVRTDRHNHRLIAGDTPDAEAVKVLARAHQNLIWTRNRHT
NALRSALREYYPAALEAFDD
>P72078_NEIGO/68-167 transposon family T9 Pfam:PF01548
YFAQYYSVYVVNPLKISKYAESRFKRTKTDKQDAKLIAQYCRLAKESELVKRQKPTDEQYRLLRMTAAYAQIKSECAAMK
NRHHAAKDEEAAKAYAQIIK
>Chapaev3-2_HR#DNA/CMC-Chapaev-3 399-2075 [Helobdella robusta]
MKKSNRSCLNEPDNFCYICGQFTPRDQRKNLSNRIKIAYYHYFGVKVADQERTWAPHICCSVCYVGLTQWLNGKRKQIPF
AIPMIWREPRDHHSDCYFCMTNIQGHSKKTKASIVYPNCSSAIKPVPHSVEYPVPTPPTDTVLYSEEEQSGDEKVDVEYK
PDYDKDKPHMITQGELSDLVRDLGLTKNKAELLGSRLQQWNLLDRGTKISHFRDRHTEFAKFYNKEDNICYCVDIAGLMT
KLDDEYDPVDWRLFIDSSKVSLKAVLLHNGNVKPSIPVAHAVGMKETYESMKTLLKVIKYTDHNWNISGDLKVVALLLGM
QLGYTKHMCFLCLWNSRDDANHYLVKDWPARIDPVPGQFNILHESLVNPDKIFLPPLHIKLGIFKNFVKALPTDSKGFIY
LKDKFKTTLTNAKIAAGVFTGPQIREVIRDPNFKLQLEPVELLAWEAFVALVQNFLGNHRSEDYVNLVENFIMAYQNMGC
RMSLKIHFLHSHLSFFPANLGAVSDEQGERFHQEISVMEHRYQGRFDSNMMGDFCWFLQRESESQYKRKRSLSTNYFY
>EnSpm2_OS_p1#DNA/CMC-EnSpm 613-3858 [Oryza sativa]
MDRSWMYTTGLRRQYKEYRDGVLSFMKAAEEDRIRRNDKYMCCPCSDCRNEILWEDEKEVHAHLIRRGFMERYTCWVMHG
EQDLGTDGAAADGSGADNHEEGDEEEHDMFVPSPLGGEMVDVDPDMLQDMLRDVDDPAMNERDSMKFSRLVSDSETPLYA
GCKPKHTKLSATLDLMKLKASSGWSDKSFTELLGILKDMLPQENTLPETTYEAKQVLCPLGLEVRRIHACPNDCILYHKQ
YADLDACPVCKASRYKRKKSAGEGKKSKRGGPAKVVWYLPIIDRFKRIFANPNEAKLVRWHATERRNDGLLRHPADSIQW
RNIDRKHKDFAADPRNMRICLCTDGMNPFGDMSSSHSTWPVLIANFNLPPWLCFKRKYIMLCLLIQGPRQPGNDIDVFLE
PVIDDLEILWKEGVETWDAYGQENFTLRVLLFCTINDYPALGNLSGQTVKGKKACSDCMEHTRSRWLKKSRKMVYMGHRR
WLPLRHAFRRKKKIFNGKKELGSAPADLSGDQVHNMVKDITNEFGKKRKRSKEDKKRMWKKKSIFWRLPYWEDLEVRHCI
DLMHVEKNVCDSLLGLLLNMPGKTKDGLNARLDLQEMNIRSELQPVTDEKTGRVYLPPACHTLSKDEKIAMLSCLADIKV
PSGYCARISKYVKLEDLKLVGMKSHDCHVLITQILPVAIRGILPPQVRHTIQRLCAFFNAIGQKIIDPEDLDGLQADIVS
TLCHLEMYFPLAFFDIMVHLTVHLVKQTKICGPAFMREMWPFERYMGILKSYVRNRAKPEGSIIEGYTTEEAIEFCIDYM
AETDPIGVPTSRHEGRLAGVGTTGRKRIVPDQASYAQAHFAVLQHMAEVTPYFEEHLAKVRQDNIGRSDIWINREHGARF
NEWFKDRVARSTDGPSEILQRLARGPSWDVDTWQGYDINGYTFYTVTQDEKSTVQNSGVRIDAYQDQAGSSTYYGRIEQI
WELNYLNFKVPLFRCSWVNIRTGVKVDKEGFTLVDLAKVGYADEPFVLAKQVEQIFYIKDPANKKMHVVRDGKRXIVGVD
NVVDEEEYNKNLHVRPQIDLDDDPEDEVAYVRSDHSEGISL
>EnSpm1B_PT#DNA/CMC-EnSpm 1966-3106 Fragment, via genewise with EnSpm2_PTr, 3 introns (2043:2132, 2407:2485, 2606:2680) [Populus trichocarpa]
FKGKFEWERADNNVARRVWENHAAIRLRDFWYEAQKKAKKYAKERELPGWNDVAVWKDFRPPYVSEAVWAEYIQHVMSAR
FTRRSQSGVENQNRRVHGSVTTHTGDSVPFVSHAKRMATVLGREPSPMELFVETHVRSDDRQKGVQQFVDSRAQHFVDTY
NSRLKERYEDDPLTHPDLDPDLWLEAGSSGGPDRNWVYGLSNTTAENLRTTRSVSTVGCSQSIPSTQTPEFAAMLDQRVQ
ARTTHLNEKYERLTADYEELRRLVMEMRSQMGGTCAPPNWPHGPGDDQPPPPPPAPPLF
>EnSpm3_OS_p2#DNA/CMC-EnSpm gi|50901130|ref|XP_462998.1| putative transposon protein  (perhaps spliced to p1) [Oryza sativa]
MSQQGEPISTTTSGSSRARTPRTGNKIPKERFRITAVDAVGLPTSPRKILSRFRSICGVIGRQKFSILQDDIKLVPAAEK
DIAWLTFKESFDYPAEHEDHLRRAAFKVIGNAWKNFKTKLVGEFVYNPANPDPGEKFPWITEQVWEEFHAKKSPPQSRAR
SEAYRLLQTRNQHPHQLGTAGYAGKEEEWQRDDEEAEESCTPLVFGDIPHPRVRNWARARYQKNDDGTIFMPNAEDQRVY
KAIKELVAEQQASHEACSQRREDDLLTNALGNKEHRGRTRGVGSSVPCKYGFPDYAWQYKKRTSNKAEKDARLEAKIRAS
IRAELTSEFDEKLESMRAKIRQEIREEQQNPQAAAAAAHEELEKPTSYTLTVRVMPTFTVPAAEGLAYKPTPETRVHGAQ
LRADCVKVQVDSVKPEYELFPLKYPPNDEVLSLGNARGTFIQWPKDLIEIRVTTRPTTAPGGRPPKRPASAPSAPPAQDR
HAQSYDVQLQKLDLGKGQEETKDKEVKKKNVAPQEFQLGMPLVGDDVLAAMGTACKDLHLYYMEKSNARKPNKATDILGK
HDRKPFLGPTNYIVVDFKDLFDLYMLRAVDTSLLKCYSL
>EnSpm-1_AA#DNA/CMC-EnSpm 8146-10146 [Aedes aegypti]
MFILMSIFIRHNLSNVALCDILELINLIVGFKSLPVTYTEFSHFFTKNSYSRHYVCKKCELYIGETMGTCPNCESSSNFF
FVTFDFVSNLRDILTRNWDAIVEHQVKSKLSQHVTDVLNAGVATAKDIKNAITLTLNTDGVKIFNSNVKRSLWPLIVCIN
DLPANIRFQRKNILIAGLWLHDGEPNLDVFLKPFSEMIQQLYYHGLNLXSVLLERVYVIACCVDTKARCKIQNFKQFNGY
EACSFCHHPGDIAKKQIRYSYKSHIPKRNLVDTLRAMAVSNSRGVAVNGVKGISPLIRIPEFDVVRNCPVDYMHGILLGV
CRQLCRTWFECPTSPCYIKDKICSIDDMLTTIAPFVESSRNARKISDRHSWKANEWLQWLLHYSPVCLKLYLPKEYYDHY
YLLVSSITLLLGDEISTDDFKMSETMLQQFVQQFEQLYGLDEMTYNVHLVSHLVDCSRDYGPLWAFSLFVFEDINGVLKK
FVKGPREPIVQITNRCIMSHTKNNADINFMSPSVKAFWNKLGRMPQNRKEKKVVNFHLHKSFANKYSENRIFEKQNSYTH
NNYIFKPKSKNEYPHEKKEHNNCYFSILEGSELLYGEIHCILNDTLGTYFFYKAIQPEEITKHYCKAQILEEFYLVRLNA
SLTKQIKMRVDGNDYLSKVQYKLHID
>EnSpm3_ZM#DNA/CMC-EnSpm 1163-4333 via tfasty with EnSpm3_OS_p1, 3 frameshifts. [Zea mays]
MDREQWMYGIDRSDINYFRHVQGFLKVAENDRLDNKATAILCPCVDCRNFDPISSSRVILGHLIMRGFTSGYTCWTNHGE
CSIGDNNGNTEGPLDTNGGPMDTNEANDHYVHIQDTKSHFADATIVDVPIDHLEYMIHDVTVTRNLSEAQASQVREILVR
ERETPLYPGSSDNRLSFTTELLRFKVASGWSDKSFTDLLNFLADKLPKGNMVPRSTTKAKKILCPIELKYEKIHVCPNDC
IIYWGKHKNNISCPTCDTSRYKKIDNLEELGSNEKKKIPAKVFWYFPVIPRLERLFANPASAKLLRWHADERKKDGKLRH
PADASQWREIDSKYEIFAKESRNIRFCSQMKFGNMTTTHSTWPVLLSIYNLPPWLCIKRKYIMLSVLIPGPKQPGNDIDV
YLEPLVQDLLKLWETGVEVWDACKKEYFNLRALLFCTIHDYKGLGNIAGLSTQGYKACYICQENTKSRYLKNSRKIVYLG
HRRWTRRNHPYRKNVDAFDGSIENEKAPSRRSGHVVYESVKDIENKFGKHNLALSGIWKKKSIFWRLPYWRDLSVCHCLD
LMHIEKNVCEALIGTIFNIKGKTKDNTNGQCDLDELNIEKPQEWYTLTKEEKIKVFNLLHDVKVPSAYSANIRRLVSKKD
LKLSGMKTHDCHVLMTQILPVVLRGSFKNIKIRDTVIRLCYFFNEINSKVLDIEALDNLQRELVQTLCQLEMYFPPSFFD
IMVHLTVHLVEEAKICGPHFLHYMYPIERFMGILKRFVRNKARPEGSIAESYVIESVIDFCVDYMDEVAPIGLPLSRHEG
RLKGQGGLGLSTEIPDQELLHKAHFLILQSAEDVSKYIDKHKKRLRKKNPEMVDEDIVRLHNKEFCDWFQKRCENKVPKN
DTVRRLAQGPSSSVATWQSYDINGYTFYTVQQDGKSTRQNSGVCNDAITEVFDRNKKSSYLRKDTYYGQLEHIWELNYTL
FKQVVFLCKWFNPKGVVVDPKYGVTTIDFRREAYKDDPFILAKHANQVFYIDDLANRHHRVVLRGKRRIVGVENVNDEED
YDLFSNMSSLDNMVIDME
>EnSpm1_SB_p1#DNA/CMC-EnSpm 1156-4779 [Sorghum bicolor]
MVDNNCYLLIVANNYSQLINFFIYVKMENRATWMYGLPRYSQAYADEVDKFITIAVNHAKTLSAGNNCSVICPCKDCKNH
LATYDVEIIRSHLIRRGFVPNYTVWLHHGEVMFLDGNDDDQEDDAEEGQLLSQYADMFEAQMQHDSANEQARGDDAGGVD
NNDGDVGGVDNNDVGACEGDAENFDNLEEMLRAIGPEILQQKKGLENLERVKTASKETVYGVEKGCPTHWTLLRFVLELL
ILKAKYGWSDCSFDDLLHLLSSVLPLPNLVPSNTYHAKKVISPLTMGVEKIHACPNHCILFRGETFEGLDKCPRCGASRY
KDNDLYSGGEASTGNKRSKKGSKKVVQESRPPEDTPLGNDAKKRKIPALVMWYLPVTDRLRRIFLNPKEAALMTWWDDER
KVDDDVIAHPADGSQWQDFDNNNPLFSSDPRNVRFALSTDGMNPFNERTSNHSTWPVILTMYNIPTWLCQKRKYLFLTVL
VSGPQQPGFDMDVFLEPVMEEFEKLWRTGELMYDAFQKETFTLRAIIFVTINDHPALFALSGQIKGKTGCLVCLDDTKWV
YLDGSKKIVYIRNRRFLKQGHKYRSKVYLKYFGNIPEDEDRPPERRHDGQYVFQMVKNISVIYGKKKMDGTPRDRSTPPI
EGVPFKKKSIFFQYLEYWQQLEVPHAIDAMHVQKNVFESLIATLMDTPKSKDSLKARRDMEQLHVMPELHPVLETKTGKY
TLPAASYNLDLEERRGLCTSVKGIKVPTGFSANPKKLVSMKDLSFPHCKAHDCHMMLTVFLPIAIRAIKPEFLKMAITRM
CYFWSKISQKKISKTELSDLHDFVVETQNQLEMCLPPAFFDPMVHLMIHMVHQIQALGPCYLHEMWSYERFMSVLSRYVH
NRAYPEGSMIEGYSSEEVIECCQEYLKVQRGIGIPDSHYKGRLAGKGTNGRKIFIDNEYAEVSRAHYAVLASTKLMEPYI
DEHMEIIQSERNGRTGDWVMKQHKQRLTSWLKDQNIQPGETIDSITISKLAAGPSRQVTSWSSYEINGYTYYTHAKDSKC
VNQNSGVRAVAIGAGGQKIDYFGIIEDIWELDYGTEALNVALFRCRWIKQHEFNEIGLRVVDLHSIGYQDDPWVLASHVT
QVFYMTDPLSIVPPKKKPKHVVIPGKQHIIGVDGVDDVEAYNKCDQMPLFTDFINKIGVVEKSLPKDVLPWERKGVKWKT
VTAADTNK
>ATEnSpm3#DNA/CMC-EnSpm  Genewise with atenspm7 protein [Arabidopsis]
RADPGYEKGAQKFVTDVAAALGDIDMIVCPCKDCRNVERQSGSDVVDHLVRWGMDEAYKLRVDWYHHGDVDSVADCESNF
SRWNAEILELYQAAQDFDADLGEIAEGEDIREDEFLAKWADAETPLYPSCLNHSKLSAIVTLFRIKTKNGWSHKSFNELL
GTLPEMLPADNVLHTSLYEVKXFLKSFDMGYEKIHAFVNDCCLFRKRYKNLENCPKCNASRWKSNMQTGEAKKGVPQKVL
RYFPIIPRFKRMFRSEKMAKDLRWHYSNKSTDGKLRHPIDSVTWDKMNDNCWHVLLVNYNLPPDLCMKKENIMLSLLIPG
PQQPGNSIDVYLEPLIEDLNHLWKKGELTYDAFSKTTFTLKAMLLWTISDFPAYGNLAGCKVKGKMGCPLCGKGTNSMWL
KYSRKHVFMCHRKGLAPTHSYRNKKAWFDGKIEHGRKARILTGREVSQTLKNFKNDFENAKESGRKRKRNDCIESVTDSD
DESSESEEDEELEVDEDELSRWKKRSIFFKLSYWEDLPVRHNLDVIHVERNVGASIVSTLLHCGKSKDGLNARKDLQDLG
VRKDLHPNAQGKRTYLPAAPWSLSKSKKKTFCKRLLEFQGPDGYCSNISRGVSVEDCKIMGLKSHDYHVLMQQLLPVALM
GLLPKGPRTAIIRXCSFFNHLCXRVIDIEVISVIEAEIVETVCMFERFFPPTFFNIMVHLTLHLGREARLGGPVHFRWMY
PFERYMKVLKDFFCSDFLKKTTSVEEKPERNTEYENNSILEGRPISAGTSFMLTEVDKNIAHLAVIQNMAAFDPYVDMHL
QYLQDTNPRCKRDASFLWNMHAKNFASWIKEQAMNGQRFHTRSLERQIQNSGVYYEATAMCRSSAKDTTQVVDLVSYYGT
VTDIILLDYNVFYVPIFRCQWAVRGNGVKVEDGFTLVNLNQSQVSFLKDPFILASQAKQVFYSRVDDSSSWYVAMKGSSR
RYSKEDAQEGNAEIGPLPTDIDMDAEMDEAEYARSDCEGIYVPNSQIEPVIDQQAEENPLVTDKDGLNEEEAIGEIELSE
GTEPPAKHKRQXGPTKMKNIAKDPTVRERVEYTIMGDPVGPGSVKLASYVGTLVREHVPITIETWKDVSQDMKTVLWKSV
QVNSSFQFELDEEFQRVAVLKQMGSLWRSYKSRTVKDINLAPNNQQRMNMRPMNISPTKWRKFVKVKTSAAFKKLESGDP
SKVTRLKVWVKSRTKKDGTLVNTNATEKIRKAAELVGNDGPPTSANPEEDHLSQLLGPDNPGRLRAMGRGMSKTELACLQ
VKSKCMTDMEEKQVLLMKKVNELQDELTRMKQRHELEVGENSAAASVNRRTHPKCLLVNWSGPEDIIGEGRILSSDPDDM
VNDCRLGPVDLKVLVEVANTPDAFLWRPAPNMYTITEAVGQMIAWPASKCVLVEKDLEIEDIAPLGLRGNSQNKCKLLDL
STDEVIVAEGRWXTQEQNALVNGLLLGPSAVKVFVDKVLMPETFVWRPTMEMTYLEDCLMTFISWPVHKVVFENLPSASG
NQKSSLQPSGSASKSSAGAKSAASKSTSSKSSASGSETPLENANAPSSPSVSKENMKCKLMDITGKKRVVAEGRWATNDP
KQKVHFVPLGDNAVXVWVDIVKVSDVKVWRPSDEVEIMEDALGTAIA
>Chapaev3-3_HR#DNA/CMC-Chapaev-3 214-1914 [Helobdella robusta]
MATRKCLNSPNLFCYVCGYFTDVDHRKTMTQLLKKAYELYFDSKVDDAEKQWKPNNICSICANTLAGWLRKSPKHKSMPF
GVPVIWREPTNHATDCYFCMTVIKGFSFKTRKSISYPDIESVSKPIPHNPVNCPVPISPDSYSFHSDDSSESDKQANPES
TNDSDDNYIPESDEIHLVNNANLSDLIRDLALTKGQAELLGSRLKQWNLLAPDAKICNFRFRHKELMLYFTSDDSMCYCN
DVKNLMAHLGHEHEVKNWRLFIDASKTSLKFVLLHNGNLLPSIPIAYSTQLKETYGNISNVLIKIKYNDYKWRVCGDLKV
IAILMGLQLGYTKFCCFLCEWNSRDKVAHYTKKIWPIRDRMEPGHKNVLHEPLVLKKDIILPPLHIKLGLMKNFVKALDK
TSDAFTYLRSMFPRISDAKIKERIFVGPQIRKVIGDKHFQDMLNGKDLEAWVAFKSLVVNFLGNNKSNNYKEIVEQCINA
FQKMGCNMSLKIHLLDSHIDFFPECLGEVSDEHGERFHQEIAVMESRYQGRWSSAMLADYCWFLQRDAPEAKHRRKSTCK
KFKPLS
>ATEnSpm6#DNA/CMC-EnSpm almost identical to ATEnSpm5, 90% identical to ATEnSpm9 genewise with the latter [Arabidopsis]
MAGNYNYGGTGGFYRDWMYKRFDEVTGNLSAEYVAGVEQFMTFANSQPIVQSSRVSSHLFSHGFMPDYYVWYKHGEEMNM
DIGTSYTNRTYFSENHEEVGNIVEDPYVDMVNDAFNFNVGYDDNYRHDDSYQNVEEPVRNHSNKFYDLLEGANNPLYDGC
REGQSQLSLASRLMHNKAEYNMSEKLVDSVCEMFTDFLPEGNQATTSHYQTEKLMRNLGLPYHTIDVCQNNCMLFWKEDE
KEDQCRFCGAKRWKPKDDRRRTKVPYSRMWYLPIGDRLKRMYQSHKTAAAMRWHAEHQSKEGEMNHPSDAAEWRYFQGLH
PQFAEEPRNVYLGLCTDGFNPFGMSRNHSLWPVILTPYNLPPGMCMNTEYLFLTILNSGPNHPRASLDVFLQPLIEELKE
LWSTGVDAYDVSLSQNFNLKAVLLWTISDFPAYSMLSGWTTHGKLSCPVCMESTKSFYLPNGRKTCWFDCHRRFLPHGHP
SRRNRKDFLKGRDASSEYPPESLTGEQVYYERLASVNPPKTKDVGGNGHEKKMRGYGKEHNWHKESILWELSYWKDLNLR
HNIDVMHTEKNFLDNIMNTLMRVKGKSKDNIMSRLDIEKFCSRPGLHIDSSGKAPFPAYTLTEEAKQSLLQCVKYDIRFP
DGYSSDLASCVDLDNGKFSGMKSHDCHVFMERLLPFIFAELLDRNVHLALSGIGAFFRDLCSRTLQTSRVQILKQNIVLI
ICNLEKIFPPSFFDVMEHLPIHLPYEAELGGPVQYRWMYPFERFFKKLKGKAKNKRYAAGSIVESYINDEIAYFSEHYFA
DHIQTKSRLTRFNEGEVPVYHVPGVPNIFMHVGRPSGEMHVDWLSEKDYQSAHAYVLRNCDYFKPFESMFEDYLSAKYPC
LPEKELYARRAEEYHLWVKEYVTYWNTTSPFPTWVQEIVQGPLNKVKTWPMYFTRGYLFHTQNHGAGRKTCNYGVCVKGE
NYADSSDEADFYGTLTDIIELEYEGIVNLRITLFKCKWYDPKIGRGTRRSHSGVVDILSTRKYNKYEPFILENDDDVLLT
TIEDLVLETPVANLNPIILDYDVGDAEPEDEFRCNLSPANLPPQYNFTPAPAVQVPATEPAQQHGPSTSAPHVRNYPPPL
QLFQNSTTQPQHQAPPPLSEEVHYTPPPTAPPQQTPPQSRDSDAPANSHPSSQGNNFQEEVPGTLPELQEDSALALQSTL
SVPNREQCVLDFKXLLSVCVACVWRFTRDRGSKLVRKITRIFTQKFNAPYYNWSCVPLDKRERLFLEFAKTHHWDPLITG
TVQYYFNEIVKRRLKDMVSTARRTREQPPWIGETLWGTMCDYWDTEEAQKRSKTYSKARLSDRNGLGPHVHYSGPKSFQE
IQDELEEKMGRPVPLGEVFIQTHTKSDGTYVDQKAEKIALAYEQNVREKLSELEAAASAVSDGSSRPRDLTLDEYAAIFL
ESTEKDARGNPYGLGCLKETLGSANRQLPGDSTFKALEERLQEAQRQIEEQAAYNEKRDAEIAAREAETARVTAEQKDKL
EHLSLVEKYLRQTDPQFLDFIATHSSTSTERIPITP
>EN1_ZM#DNA/CMC-EnSpm 1418-4908 Via genewise with PSL, 1 intron (4045:4163). [Zea mays]
MSDDRRRAMYDGFDSVTHGHSDAWLRVADEFVALAFVGDARLARCPCIKCRNLVRLKKVELSYHIFKHGFMPNYLVWHEH
GEVDHTIESDGDQDIDRMEEMLDDIRNEYPDLQNNQAFPEDVREFYKLLEASEAKVHEGTNVSVLQVVTRLMAMKSKYTF
SNKCYNDIVKLIIDISPPNHNMPKDLYHCKKLVAGLGMNYQKIDACEDNCMLFWKEHENTTHCIHCSKSRYAVVLDEDGN
EVTTKVPIKQLRYMPITPRLKRLFLNQETAKQMRWHKEGDRQGQDPDVMVHPSDGEAWQALDRFDPEFARDPRSVRLGLS
TDGFTPYSNNSTSYSCWPVFMMPYNLPPNKCMKEEVMFLALIVPGPKDPVTKINVFMEPLIEELKMLWQGVEAYDSHLKC
CFTLRAAYLWSIHDLLAYGIFSGWCVHGILRCPICMGDSQAYRLEHGKKETFFDVHRRLLPYNHPFRKDTKSFRKGKRVR
DGPPKRQTGENIMRQHRDLKPGVGGRFQGYGKEHNWTHISFIWELPYTKALLLPHNIDLMHQERNVAESIISMCFDFTGQ
TKDNMNARRDLAELCDRPHLELRKNPSGSESRPQAPYCLKRQEREEIFQWLKKLRFPDRYAANIKRAVNLDTGKLVGLKS
HDYHILIERLVPVMFRGYFSPDVWKIFAELSYFYKQICAKEISKKLMLRFEKEIVVLVCKMEKVFPPGFFNCMQHLLVHL
PWEALVGGPAQFRWMYSQERELKKLRGMVRNKARVEGCIAEAFAAREITLFSSKYFSDTNNVNAQTTRYHVAEQAPITDL
SAFKWDGKGVGAYTSHLVGTIERNKTLLFLYVNMPELHPYFQIFDSIYKPNKQLTQKQLDDLRLKGLHGGPSFVQCVSKD
LLQISHGQLTARKFDRYDINGYRFRTAKLEASRPLAATTNSGVVASSYSDDGQLEDYYGIVQDITEYTFGGHKPLRLVTF
DCIWFDPQVGTRVDEFGMVEVKHASRYKGNEYNNIILAHQAHQVYYLSYPHKSFKTWWVAYKVNP
>ATENSPM10#DNA/CMC-EnSpm 1228-7742 via genewise with ATEnSpm11#DNA/CMC-EnSpm, 11 introns (2104:2193, 2838:2913, 3545:3691, 3906:3963, 4108:4223, 4760:5203, 5569:5638, 5887:6091, 6189:6258, 6514:7023, 7302:7486) [Arabidopsis]
RNSIEYEKGATTFVYASSRRLGDPSEMFCPCMDCRNLCHQPIDTVLEHLVIKGMDHKYKRNGCWSKHGEIRADKLEAEPS
SEFGAYELIRTAYFDGEDHSDSQNQNEDDSKEPATKEESDFREKLKDAETPLYYGCPKYTKVSAIMGLYRIKVKSGMSEN
YFDQLLSLVHDILPGENVLPTSTNEIKKFLKMFGFGYDIIHACPNDCILYRKEYELRDTCPRCSASRWERDKHTGEEKKG
IPAKVLRYFPIKDRFKRMFRSKKMAEDLRWHFSNASDDGTMRHPVDSLAWAQNTKYSTWPVLLVNYNMAPTMCMKAENIM
LTLLIPGPTAPSNNIDVYLAPLIDDLKDLWSDGIQVYDSFLKESFTLRAMLLWSISDYPALGTLAGCKVKGKQACNVCGK
DTPFRWLKFSRKHVYLSNRKRLRPGHPYRRRRGWFDNTVEEGTTSRIQTGEEIFETLKDFKNDFGRPLERNSKRKRSDLC
EDDEYGEDTHQWRWKKRSILFELPYWKXLPVRHNIDVMHVEKNVSDAIVSTLMQSAKSKDGLNARKDLEDMGIRSNLHTQ
LRGKRTYLPPAAFWLSKDEKKRFCKRLARFRGPDGYCANISNCVSVDPPVIGGLKSHDHHVLLQNLLPVALRGLLPKGPR
VAISRLCHYFNRLCQRVIDPEKLISLESELVETMCQLERYFPPSLFDIMFHLPIHLAREARLGGPVHFRWMYPFERYSGE
CMAFCLKFLQNSLSVPEVVNRNEDVDSNSLVLEGRPLQKATQVTLTSKERDIAHRYVLMNMAVMDPYVNKLFCKTGHNLH
LEELQATDARCMKNETFLWKTHAEKFSQWVKEKVNIXHIAQSYKGFVINGHRFHTDDMKRKTQNSGVTYEAFSMCRSSAK
DTRQQADIVSYFGVIKEIIMLDYHMFQVPIFKCHLANKGNGVKEEDGFTLVNLHLNQTAFLQDPYILAAQAKHVFYSRED
DSSPWYVVMKAPPRGYHELETEEEFVAASVSIQENDDLGNESSDDESFCVRNDCEAEPAEEDHQPPEEEGIEEEMAAEEA
GTEEEGTEILSTESTQSHQSATKKRKTRGPTRMRKIAKQPDEKLEVEFTSLGEHVGSGSVTLSSFLGPLVREHVPVLLHD
WRHLPDETRDTLWEEIQGRFNLKEDWQKDAVFKQMGCVWRSSKSKLTTKVRAVKSKTDLLSLKPSNIQSVTAWNAWVKNR
KTTAFKVVYFCKLKFLEDDFSNPKLVTRSKVWIAGHTHSDGRPVNPEFAETIEKIKSIDSEMDSSSFTDLKEDAVSQVLG
KDKPGRLRGMGRGVTATKLAFMLARDSHVEKLEATQADLLTKLEDLQNVVSGLAAKKAKDSSAVKIIIIDWNMADSVVGE
GRLCSTDRQELVNNMPLGPSAAIVKVEKVFNKAAYLWRPSPGKFVMGDVLNENIAWPLHSIQYVNSSPPLHSTASTSKSA
KKKCIMLDYKNGRERVAEGRVCTSNPSDTVHHMPLGPNASKVCVEVSKIGDAAVWRPNSEIQTIADAVGSIVAWP
>Q8KL40_RHIEC/6-116 transposon family T34 Pfam:PF05717
NRVRIMVATKPVDFRKGHDGLAALVKNELHKDPFTGTVFVFRSRKADRLKLIYWDGSGLVMAYKRLEEHTFTWPGIKDGL
MTLGHAQFEALFAGLDWRRVRAVEARAPDAI
>Q8VLF0_SHIFL/6-110 transposon family T34 Pfam:PF05717
TGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLAGDPGRESAPDASS
VIHATGGDRVATSQTDRTAWHPDIT
>Y012_METJA/58-119 transposon family T35 Pfam:PF07282
WRKIAKKLEYKSVVLYVNPHYTSKTCPVCGSKMKSQEGQVVKCDKCGIFDRQFVRCYNIFKR
>Q9WXY8_THEMA/312-383 transposon family T35 Pfam:PF07282
FASLQQKIEYKAKLYYGVQSEKVDPSYTSQTCPRCGHVSKENRPDHGERFVCQSCGYEEHADIVGAINIALR
>Q979E8_THEVO/288-358 transposon family T35 Pfam:PF07282
YGMLASQVMYKASWEGLPVIELTRKETRNTSRMCSVCGSLTRIEHGRILKCDSCGLEIDRDVNACINIAFR
>Q9F8W1_ECOLI/171-395 transposon family T32 Pfam:PF04986
GAVTLIQRFGSALNLNVHFHMLFLDGVYVEQSHGSARFRWVKAPTTPELTQLTHTIAHRVGRYLERQGLLERDVENSYLA
SDAVDDDPMTPLLGHSITYRIAVGSQAGRKVFTLQTLPTSGDPFGDGIGKVAGSSLHAGVAARADERKKLERLCRYISRP
AVSEKRLSLTRGGNVRYQLKTPYRDGTTHVIFEPLDFIARLAALVPKPRVNLTRFHGVFAPNSRH
>Q56249_BACP3/7-280 transposon family T2 Pfam:PF01385
QFRLYPTKEQEQLLAKTFGCVRFVYNKMLEERIQMFEKFKDDQESLKQQTCPTPAKYKKEFPWLKEVDSLALANAQLNLQ
KAFQHFFSGRAGFPKFKNRKAKQSYTTNMVNGNIKLSDGYIKLPKLKWIKLKQHREIPAHHIIKSCTITKTKTGKYYISI
LTEYEHQPAPKEVQTVVGLDFSMSTLYVDSEGKRANYPRFYRKALETLAKEQRKWSRKKKGSNRWHKQRLKVAKLHEKIA
NQRKDFLHKESHKLAKRYDCVVIEDLNMKGMSQA
>O31330_BORBU/1-276 transposon family T2 Pfam:PF01385
KYRIYFNTNQKKYFSKVFGCVRFLYNKMLSDKKDYYKNNGQNLITYPSKYKEEFPFLKEVDSLALCSAWIDLNFAYSNFF
REIKKGNKMQGFPKYKSKKNRQTYRTNNQKNSIRIENGYKNYLIGFIKLCLHRCIKDNELVKNVVVEKDTDDKYHISITV
ECLDTKNNNETKGDKEEIVGIDMSMKHFLVSSGGEKINHPKYLLKNENKLKKYQRKLSKKQKGSINRAKSRLRVAKLHKK
ISNQRKDFLHKLSYYFVSNYKNIVIENLSIKGMQKG
>Q9K5S1_BACHD/2-253 transposon family T30 Pfam:PF04740
TKHLDVAQCLQIIDGTNTALKSYMDHFDLMEAAISRVLELEGSLKGKGGEALLRNYQELQLPAIRAGRALISSMMDKGEK
LQSLILAFEPSENGMVSEDYYDRLVPRGYDRFENFMEQNKSEIDSIAASVSHIIDLGKLDISHVQDRVDDARKHAKDTVE
GLYELDHEGMTLMRELQREMNELKAILKQVIEWTTNGGPLLNGVNIQDVRSYFQDMTLHTKASEIDLETLDAHALRDILQ
DGALIKPIVQKF
>Q9AFR5_SHIFL/144-328 transposon family T32 Pfam:PF04986
GIFCAIHTYGRRLNWHPHVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQRLLKAWSEGLAMPESLSHITTESQRR
SLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGASLSFRYLDHKTGETATETLTQRELVARLKQ
HIPEKFFKMVRYFGFLANRVCGEKL
>YXID_BACSU/1-244 transposon family T30 Pfam:PF04740
MKTLDVHALHEGIQHTIEKLDKQKQQLEKLEKSVEHLAGMKDALKGKGGDAIRTFYEECHKPFLLFFGIFIDEYKKVLKQ
TQHAISSVESNSHGMIAEAFLSHDARHGVKHAREVTEQLTDAVNRQTSAIDHIVSLPTVNDSFFRMETEQAERLISDTLN
KLFQFDGQQTQALEAGKSDFQTMKKYIDQLETMYTGPKIEITGYKSGSILKSQEEENINQIFGAINPQMKQADDSPMEMM
LKKL
>Q8CME0_SYNEL/290-360 transposon family T35 Pfam:PF07282
WGELVRQLEYKAQWYGRTLVKIDRWFPSSKRCGQCGHIVERLPLSVREWDCPKCGAHHDRDINAAGNILAV
>Q02881_DROHE/67-139 transposon family T5 Pfam:PF01498
KRRIIRKIRENPKLSAPKLTQQVQDEMGKKCSVQTVRRVLHNHDFNAQVPRKKPFISTKNKGTRMTFAKTHLD
>Q9UXI7_SULSO/359-425 transposon family T35 Pfam:PF07282
YRKLMESIELKAQEYGMKVFEVVEYNTSKYCAYHDVEVKRNPRGVVNRPLGHKLHSDLNGALNILKK
>Q48348_ENTFA/1-953 transposon family T7 Pfam:PF01526
MAMKRILTTSQREQLLSVDHLSEEDFKAYFSFSDYDLEVINQHRGKVNKLGFAIQLCLARYPGCSLSNWPIKSTRLTSYV
SRQLHLDAIDLNSYDHRNTRANHFNEILEVFNYHRFGSANTQKQLIEYLIELALENDDSIYLMKKTIDFLTRKRIIFPSI
ATLEDIISRCRDKAENNLFSILLCSLTDIQIEKLESLFQIYEETKITKLAWLKDIPGKANPESFMSICKKVEVIASMGLG
TINVSHINRNRFLQLARLGENYDAYDFSRFELEKRYSLLIAFLVNHHQYLIDQLIEINDRILASIKRKGTRDSQEQLKEK
GKLATKKLEHYASLIDALHFAKDNDSNPFDEIERIMPWEDLVQDGEEAKKITGNKNHGYLEMVRNKANYLRRYTPMLLRT
LSFKATPAANPVLMALTQLTDLHNSGKRKIPADTSTDFVSKKWKSLVRPEEGKIDRSYYELVAFTELKNNIRSGDISVEG
SMIHRNIDDYLVDLSACIDSETIPDTFEDYLKDREIILDLQLQFYSTVDKRISRANLKKLEKVTPSEAEIYRKKLYSIIP
KIRLSDLLIEVDSWTNFSQEFSHDSTGKPPSEQERKIIFAALLGLGMNIGLEKMAQSTPGISYSQLANAKQWRFYKEALT
RAQSVLVNYQLKLPVADFWGEGKTTASDGMRVPVGVSALKSDVNPHYKSMEKGATMIRSINDRHTTHHIEVASTNTREAT
HTLDGLLYHETDLDIEEHFTDTNGYSDQVFGMTALLGFDFEPRIRNIKKSQLFSIKSPSYYPNLSEDISGKINVKIIEEN
YDEIKRIAYSIQTGKVSSSLLLGKLGSYARKNRVALALRELGRIEKSIFMIDYITDSELRRRITHGLNKTEAINALAREL
FFGRRGKFMERDIRRQLQSASALNVLINAISIWNAVYLQAAYNYLVKIDPEVTKYMKHVSPINWEHITFLGEY
>TRA1_COMTE/1-945 transposon family T7 Pfam:PF01526
MQGWHTTFLGMRGLPRDISDFEMKAFFTFDGAERDAINARRGDSHKLGLALHIGFLRMSGRLLGAFRVIPVALWRHLGNE
LGIAAPEVASLRAMYERGRTLFDHQQVACTVLGFQWMSEHQRRSLVRELRDEVAGCDRDQLLVRARQWLYKNKLVIVHER
AIRTLIAAALAQLEVETGTAIAASVDPATLDRWRASVSELRPDGQTQQSWLWAAPAKHSTRQISEVLERIDLLYTLDVHK
HLADIPDLILRRYARRLVSRPPSAGAKIKEPARTVEVACFLRYCLFTTTDQLILMVQRRIADLWRQAAADVPATVNWAAM
YKTLLGELVALSAQGAVPDAELRARLEALITETQKRKPPSRASLVREGLIDGIRPVRSLLVAIAKLPWQATGEHPAIEYL
AKLQALYLKGSRKLPVEVVAPSLGMIWQVSISSPDRERAFQALEVATLFALRRAVRNGSVWIEHSLSFRGRARLFFTDER
WQAESKKHYARLSLPSKAATFLKPLLARVTAGVDAVAAAARSGVLRVDDELHLSPLPAEDEDPEVTKLRAALDHRIGEVQ
LPEVILAVDAQVRFSWIMLGREPRSTDELLMVYAGIMAHGTSLTAVECARMIPQLSATSIRQAMRWARDERRLSQACQAV
LEFMQRHPIAATWGRSDLASSDMMSMETTKRVWQARLDPRRNTPSIGIYSHVKDRWGIFHAQPFVLNERQAGVAIEGVIR
QEKLETSQLAVDTHGYTDFAMSHARLLGFDLCPRLKELKQRHLFVPRGTKVPAEIAAVCEANVDVALIEKHWDSLVHLAA
SVMSGHASAVAALARFGSAAQGDPIYEAGVQLGRLLRTAFLADYFVKDAFRNELRRVLNRGEAVNALKRAIYTGRISPAQ
AKRVDEMQAVADALSLMANIVMAWNTSQMQAVLDRWSNRRQVIPPELIGKIAPTRLESINLRGVF
>TNP6_ENTFC/4-969 transposon family T7 Pfam:PF01526
ARGRELLTPEQRQAFMQIPEDEWILGTYFTFSKRDLEIVNKRRREENRLGFAVQLAVLRYPGWPYTHIKSIPDSVIQYIS
KQIGVSPSSLDHYPQRENTLWDHLKEIRSEYDFVTFTLSEYRMTFKYLHQLALENGDAIHLLHECIDFLRKNKIILPAIT
TLERMVWEARAMAEKKLFNTVSKSLTNEQKEKLEGIITSQHPSESNKTILGWLKEPPGHPSPETFLKIIERLEYIRGMDL
ETVQISHLHRNRLLQLSRLGSRYEPYAFRDFQENKRYSILTIYLLQLTQELTDKAFEIHDRQILSLLSKGRKAQEEIQKQ
NGKKLNEKVIHFTNIGQALIKAREEKLDVFKVLESVIEWNTFVSSVEEAQELARPADYDYLDLLQKRFYSLRKYTPTLLR
VLEFHSTKANEPLLQAVEIIRGMNESGKRKVPDDSPVDFISKRWKRHLYEDDGTTINRHYYEMAVLTELREHVRAGDVSI
VGSRQYRDFEEYLFSEDTWNQSKGNTRLSVSLSFEDYITERTSSFNERLKWLAANSNKLDGVSLEKGKLSLARLEKDVPE
EAKKFSASLYQMLPRIKLTDLLMDVAHITGFHEQFTHASNNRKPDKEETIIIMAALLGMGMNIGLSKMAEATPGLTYKQL
ANVSQWRMYEDAMNKAQAILVNFHHKLQLPFYWGDGTTSSSDGMRMQLGVSSLHADANPHYGTGKGATIYRFTSDQFSSY
YTKIIHTNSRDAIHVLDGLLHHETDLNIEEHYTDTAGYTDQIFGLTHLLGFKFAPRIRDLSDSKLFTIDKASEYPKLEAI
LRGQINTKVIKENYEDVLRLAHSIREGTVSASLIMGKLGSYSRQNSLATALREMGRIEKTIFILNYISDESLRRKIQRGL
NKGEAMNGLARAIFFGKQGELRERTIQHQLQRASALNIIINAISIWNTLHLTTAVEYKKRTGSFNEDLLHHMSPLGWEHI
NLLGEY
>O06526_HELPY/352-421 transposon family T35 Pfam:PF07282
FYQIISFLDYKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNIISK
>Q93EQ5_PHOLU/291-361 transposon family T35 Pfam:PF07282
WHGFIKKLEYKAAAAGVHLVKLDQWFASSKTCHCCGHKMPEMPLRKRIWPCPCCRVEHDRDINAAINIRRK
>Q9X8Z6_STRCO/301-371 transposon family T35 Pfam:PF07282
WSSFVGMLKYKAERYGRTLVVIGRFEPTSQTCSTCGVKDGPKPLQVREWTCTACGTVHDRDHNAAINVKQA
>Q9X0D4_THEMA/301-372 transposon family T35 Pfam:PF07282
WRRFLELLEYKAKRCGIEVIKANRYYPSSQMCSECGYINKEVKDLSVREWTCPVCGAHHDRDVNAAKNLVRY
>Q972S9_SULTO/312-378 transposon family T35 Pfam:PF07282
WRTIHHVLRYKAPLYGSFVKEANPYLTSKSCPRCGWVSRKVGGTFRCERCGFTLDRQLNASLNIYLK
>O83029_DEIRA/300-371 transposon family T35 Pfam:PF07282
WGEFIRQLEYKAAWYGRLVSKVSPYFPSSQLCHDCGFKNPEVKNLAVRTWTCPNCGETHDRDENAALNIRRE
>Pi_model.supercont1.16.13.1 1440 novel transposase Pi-A IRs plus 9 bp TSD
MGRFFEAFPEVVLLDSTHGTNAAKYKLFSFMIEDTFGHGQYVQHALVENESHACMKDAINAFKENNTSWDQIRAFMVDKD
FGEITRLQKEFPLARVLICHFHLKKYLRAEMSNAIYGGRHGVDVDRVEDSLDMMVKARTKEEYDRGFRYMYYILDGFDEV
GELPELPEPKHPLLQYFVLNWHSCKEMWSIYERGDVAHLGNHTNNRLESAWGVLKEILRPEMELDECVETLFFLQSTAEL
EYASRFNVIGSRHYHGADEMLLRLSALMSPHAFELVRKEYELFKSGSVLYEGKWLKHSIARLKSLTTDCEYTVDVSTYTC
SCFFMRTMLLPCHHTMFVRSSMDKKKVIPVNYIHTRWLLQSEANRPEEDESGDDISCAALRLQTSHMRSVEHAVLNGSTK
WKTGMDIAGSVVEAMCSQGTPTYLEMAEALREFGEYIKQG
>GB:CAA39915 putative coding sequence (ISa-element) [Sinorhizobium meliloti]
MKTVCETLGVARSNIAARAAGSPSRARGRPPLPDRELVEDIKAVIADMPTYGYRRVHAILRRNARKLGRSWPNAKRVYRV
MKLHNLLLVRHTGAVDDRLHEGQVAVERSNIRWCSDGFEIGCDNKEKVRVAFALDCCDREAIAHVATTEGIKSQDVQDLV
ITAVENRFGRINMLSEPIEWLTDNGSCFIAKDTASLLRDIGMEPCTTPVRSPQSNGMAEAFVKTFKRDYVSVNPTPDAET
VMAQLPFWFEHYNNLHPHSALGYQSPREFISSQSQT
>GB:AAC44031 ORF1 (ISa-element) [Agrobacterium tumefaciens]
MTSHSPKIEVLSGPERRRRWSTAEKLAIIQETYEPDATVSIVARRYGIQPNQLFTWRKLATQGALTATAAEEDVVPASEY
RALQNQVKELQRLLGKKTMEGEILKEALDIATGPKKHLLRSLSLPKGSSR
>GB:CAA27829 unidentified reading frame 1 (ISa-element) [Agrobacterium tumefaciens]
MKAVADTLGVSRSNLIERLKGRSKPRGPYNKAEDAELLPAIRRLVDQRPTYGYRRIAASSIAKGEPPISLSSTPNGSIAS
WVTTPCYWRSTQPFARAASTMARSWSCAPTCAGARTAWSSPAGMARSFVSPSSSTPSTARSSPGRPLPMQAFPAQTCAT
>GB:CAA40541 orf2 (ISb-element) [Pseudomonas syringae]
MLFRDVLHHPEKHVGLAQRFLLIGLCAVIQVGEPQRGPVGVMRQTTARDGRFFQVAAQVIDGLSAVFRLLRQVDVPVLAT
SGQYQTAPVAFTEDVGQRRRHRQLRKRLSQQVIAHQPHPAPPQGLFVERQIFPDALLIQAARGHRQVDVGMPVEPPAIGV
QRPENPDAQTAPLGGVDQVIGRQPKQRIEQPAVVEEQGP
>GB:CAA40540 orf1 (ISb-element) [Pseudomonas syringae]
MKPAYPPLLLQMSPAYTPRPLKNLFTANQCWAHLLEEGGLRDIEVETVTKMLACGTSILGVKHYTCGNHSCPHVKYLCNT
CHCRACPSCGKKATDQWITVQNNRLPDCPWQHLVFTLPDTLWPLFFYNRWLLDALFRLAADNLIYAAKRRGLRVGIFGAL
HTYGRRLNWHPHVHLSVTAGGLDEQGVWKNLSFHKEALRRRWMWLVRDYLLGQPLSQLTMPPPLAHILCESDWRRLILAA
GGQHWHIHLSKKTKNGRKTVNYLGRYLKKPPISGSRLAHYTNGATLRFTYLDHRTQAYQQETLSQADMLFRVVQHIPEKH
FRMIRYFGFLANRVCGQYLPKVYEALKMATPGPTPKLYFAPMAKAFLNVDPFRCVLCGARMVYTAAISGLTVQGLNLNAQ
AIAQMRYVKP
>GB:AAC61485 transposase (ISa-element) [Streptococcus pyogenes]
MQDYYTPKGKQLTIHERRQIQRWKLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQVRKGKFEAAYSAQHAQLVYQENRK
RSVRPIRQRKQDREAIEHYMRQNYSPEMIVKAKGVQVPVSTIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGK
SIEQRPDSINQRLEAGHYEIDTVILTRAKNQCLLTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITADNGTE
FSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHWINHYPKRLFNYKSLVEMLKLANFN
LKFGFPLKNFPQKKEKSG
>GB:AAC63089 transposase 1513 (ISa-element) [Corynebacterium striatum]
MRSYAGSDIVERLMRRWCLCQIQARSWGKDSVMPAPMKTQAVDGFPSGVFDKHALVGRGRRLTVEDRVAIEAGCRVGDSA
RAIAQKINRHHSVVAREITRNGWKIVDEDGTEQLRYNAHNAAVSTAGRMVRPKLRKLDESPTLRGVVVDCLARRWSPGRI
SAWLEHAFSDDESMRISHEAIYSALYIQGKGSLRAELEEVMKTKDVLIRGGSTRKRRARNAGVLTGRPWIKGAEITHRSP
EADDRAIPGHWEGDLVIGKGGKSALITLVERTSRYTLLGHLPDEHSSHTVVATLQDMVKDLNTEQLKTITWDQGAEMAVT
AQVQIKDGCQVFFCEPHSPWQRPTNENTNGEIRRRFYKKGTDFATVTPEHVAWVQNELNETPRQILGGATPREILNELFK
RGASTA
>GB:AAB01723 putative transposase (ISa-element) [Pseudomonas alcaligenes]
MSYHELSATERVTIQIGLCNGFSQRRLARLMNRSPSTVSREIRRNRNAQGEYVADDAQRLMHTRRVVCRPAKRLVPGNEL
FELVAHLLRQRFSPEQIAGKLRTMKSPSFEDAYVCRETIYNAIYALPVGELRKELIICLRQGKTTRRPRSGGVDRRGQIP
DMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASAVATLVERTSGYLILAKMNDATATSAVEGFSAALNRMPLAVRKSMTY
DQGREMARHAEITQKTGVAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVYSQEQLDAIAYELNIRPRKRFNWKCPI
EVMTEVVALQHDAPASIQ
>GB:AAA27430 ORF-1 (ISa-element) [Transposon Tn4551]
MSKHITEEQRYAISMMLQIPMSKKAIAEAIGVDKSTVYREIKRNCDARSGSYSMELAQRKADRRKQQKHRKEVLTPAMRK
RIIKLLKKGFSPEQIVGRSRLEGIAMVSHETIYRWIWEDKRRGGKLHKYLRRQGRRYAKRGSKNAGRGFIPGRVDIDERP
EIVELKERFGDLEIDTIIGKNHKGAILTINDRATSRVWIRKLSGKEAIPVAKIAVWALRKVKNLIHTITADNGKEFAKHE
EIAQKLEIKFYFCKPYHSWERGANENTNGLIRQYIPKGKDFSEVTNKQIKWIENKLNNRPRKRLGYLTPNEKFKQIINQN
SVAFAS
>GB:AAA59388 transposase (ISa-element) [Streptococcus pyogenes]
MQDYYTPKGKQLTIHERRQIQRWKLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQVRKGKFEAVYSAQHAQLVYQENRK
RSVRPIRQRKQDREAIEHYMRQNYSPEMMVKAKGVQVPVSTIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGK
SIEQRPDSINQRLEAGHYEIDTVILTRAKNQCLLTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITADNGTE
FSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHWINHYPKRLFNYKSPVEMLKLANFN
LKFAKR
>GB:AAA26892 transposase (ISa-element) [Streptococcus salivarius]
MNMSTNYSTTNQSYKHLSEAERGEIEAYLSVGLKPAEIARRLGRNRSTITREINRGSITQVKKVNGAKGLLPTLLCRCCS
ITVIRHAREASYYLKLDSVSDDFMRAFTDAMREKPRVHSVDTFVHTYRLQHVDAVVPSTKTLYNYIHQGLLEIKVIDLPR
RVRIRKKFTKRPSTKKHLGKSIEERPEEINNRSRFGDWEIDSVLGGKTIGEPSILTLVERQTRYAVTKKLVEKKAEYVNQ
AVLECMKLYPIKSITADNGNEFSSLSKIEGLDVYFAHAYSSYERGTNENFNGLLREFIPKGCSLKELNQNLLEDYTKAIN
ERPRRIHGYQSAKKLFELTQTA
>Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)
SETSSILDQQYSSYAFSTGLSDADSLFIGKNFKDKDEMVFTLRMFAVKHNFEFHTVKSDLTRYVLHCIDENCSWRLRATR
AGGSESYVIRKYVSHHSCDSSLRNVSHRQASARTLGRLISNHFEGGKLPLRPKQLIEIFRKDHGVGINYSKAWRVQEHAA
>aF15K19/T13H18 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVPYPDWVANSIVVKKKNGKDRVCIDFTDLNKACPKDSFPLLHIESCGIYRWERVTNFZDAFSGYNQIMMNPE
DQEZTSFITDRGIZCYKVMLFGLKNAGATYQRLVNKMFHEHLGKTMEVYKDDMLVKLLKKKDHIKHLEECFEILNQYQMK
LNPTKCTFGVPSWEFLGYIV
>aT15D5 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGLIREVKYPDWLANPIVVKKKNGKWRVCTDFTDLNKAYPKDSFPLPHIDRLVEATIGHELLSFMDAYSGZNQILMRP
NEQEKTALITDRGTYCYKVMPFCLKNAGATYQRLVNRMFADQLGKMMEVYIDMLVKTAHEKDHVPQLRECFKILNKFKMK
LNPEKCSFEVPSGEFLGYIV
>F13E17 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGASVLFVKKKDGSFRLCIDYRGLNHVTVKNKYPLPRIDELLDQLRGATCFSKIDLMFGYHQPVAEAD
AZKTAFRTRYGHFEFVVMSFGLTNAPAAFMRLMNSVSQZFLDEFVIIFVDDILVYSKSPEEHEVHLRRVLEKLREQKLFA
KMSKCSFWQREMSFLSHIV
>F8N14-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
WLANLVLVKKKNGKWRVCVDFTDLNKACSKDSFPLPHIDRIVESTSGNKLLSFMDAFAGYNQIMMNPEDQEKMAVYTKQG
LFCYQVMPFRLKNVGVTYQRFVNNIFALQIGKTMEVYIDDMLVKSMKEDEHTAHLHECFQQLNLYNVKLNPAKCRFKVRS
GEFLGYLV
>F3D18 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGCIRPSTSPWGGSVLFVKKKDRSFRLCIDYWGLNMVTVKNKYPLPRIDELLDQLRGATCYSKIDLTZGYHZIPIAEA
DIRKTAFRTRYEHFEFVVMPFGLTNGPSSFMRLMNSLFKEFLDEFMIIFIDDILVYSKSPEEHEVHLKRVMEKLQEHKLF
TKLSKGSFWQREMGLLGHIV
>aF12P23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKAGLIKEVQYPEWLANPVEVKKKNGKWRVCVDYTDLNRACPKDSYPLPHIDRLVKATVDNELLSFMDAFSGYNQIVMHK
DDCEKMTFIKDRKIYCYIVMPFALKNAGATYDRLVNEMFAELLGVTMEVYIDDMLVKSLLAEDHIKHLTACFDIFDKYQM
KQNPTKZTFGATFGKFLGYIV
>gi|15723977|gb|AAL06405.1|AF378025_1 reverse transcriptase [Avena sativa] (Gypsy_Ty3-family)
VRKEVFKFLDAGIIYPIADSQWVSLVHCVPKKGGITVVPNEDNELIPQRVVVVYRMCIDFRRINKVTRKDHYPLPFIDQM
LERLSKKTHFCFLDGHSGFSQIVVKAQDQEKTTFTCPYGTYDYRRMPFGLCNAPATFQRCMSAIFHGFCEEIVEVFMDDF
SVYGTSFDNCLHNLDKFLQRFEETNLVLNWEKCHFMVNEGIVLGHKISERGIEVDRAKIEAIENMPCPRDIKGIRSILGH
AGFYSRFIKDFTKV
>gi|15723972|gb|AAL06403.1|AF378022_1 reverse transcriptase [Hordeum vulgare] (Gypsy_Ty3-family)
KEVVKLLDEGIIYHVAHSDWVSPVHSVPKKGGITVVPNDKDELIPQRIITGYRMVIDFRKLNKATRKDHYPLPFIDHMLE
RLSKLTHFCFLDGYSSFSQIPVAQSDQEKTTFTCPFGTFAYRRMPFGLCNAPATFQRCMMAIFSNFCENIVEVFMDDFSV
YGSSFDDCLSNLDRVLQRCKDTNLVLNGEKCHFMVNEGIVLGHKISERGIEVDKAKVDAIDKMPYPTDIKGIRSFLGHGG
FYRRFIKDFTKV
>gi|15724013|gb|AAL06415.1|AF378051_1 reverse transcriptase (Cyclops) [Pisum sativum] (Gypsy_Ty3-family)
VRKEVFKLLDAGMIYPISDSPWVSPVHVVPKKGGITVIRNDKDELIPTKVETGWRMCIDYRRLNTATRKDHFPLPFMDQM
LERLSGQQYYCFLDGYSGYNQIAVDPADHEKTAFTCPFGVFAYRKMPFGLCNAPATFQRCVQAIFVDLIEKTMEVFMDDF
SVFGGSFSLCLANLKTVLERCVKTNLVLNWEKCHFMVTEGIVLGHKVSRRGLEVDRAKVEVIEKLPPPVNVKGIRSFLGH
AGFYRRFIKDFTKV
>gi|33113970|gb|AAP94592.1| retrotransposon Opie-2 [Zea mays] (Ty1_Copia-element)
MDPKGKGMVINDKEKESFVNEPNDDKPTDSGSGHKRKDGRKKKTRRIKEIVYYDSDESSSSQKDNDDYDRRKTVNSNFSF
DYSRIPHSSNAQLLPIPLGKPPHFDGEDYGFWSHKMRTHLFSLHPSIWEIVESGMKFDSSDSPVFINEQIHKNAQATTVL
LASLCRDEYHKVSGLDNAKQIWDTLKISHEGNDVTLLTKMELVEGELGRFAMIRGEEPTQTYNRLKTLINKIRSYGSTRW
TDHDVVRLMLRSFTVLDPHLVNNIRENPRYTKMSPEEVLGKFVSGRMMIKEARYVDDALNGPINEPQPLALKATRSKEAL
PSKVAQFEAAGLNDEEMALIIKRFKTVLKGRKGQPSKTKAKGKRSCFKCGKLGHFIANCPDNDSDQDQGNKREKKKNYKK
AKGEAHLGKEWDSDCSSSDSDNEGLAATAFNKSSLFPNERHTCLMAREKKVSTHNTSTYASSSEDESSDDDEIDYSCLFK
GLDRTKVDKINELIDALNDRNILLEKQEDLLYEEHDKFVEAQKSLALEIKRNEMLSSELSSCHETIAKLKGFNDDLNAKL
EVACKSNSCVEIVETCNRCKDFDIDACSKHLVSISKLNDELASLNAQLKTSKSEFDKLKFARDAYTIGRHPSIKDGLGYK
REAKNLTSHKAPISAKEKGKAPMVYASGGSSWIIDSGCTNHMTGEKKMFTSYVKNKDSQDSIIFGDGNQGKLSLLATICY
LLANYAIWDIIVFLQIPLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQDKSETQGTLKRFLRRAQNEFELK
VKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTMLGEFKTPECFWSEAVNTACHAINR
VYLHRLLKKTSYELLTGNKPNVSYFRVFGSKCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVV
FDETNGSPREQVVDCDDVDEEDVPTAAIRTMAIGEVRPQEQDERDQPSSSTTVHPPTQDDEQPFRVEEALLDLDWVLAMQ
EELNNFKRNEVWSLDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGP
IKEEVYVEQPPGFEDERYPDHVCKLAKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCNGDLFVCQIFVDDI
IFGSTNQKSCEEFSRVMTQKFEMSMMGKLNYFLGFQVKQLKDGTFISQMKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLN
KGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSEPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSD
SDNAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESA
IRMAENPVEHNRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNVLDSRNLD
>gi|15724009|gb|AAL06413.1|AF378049_1 reverse transcriptase (Cyclops) [Pisum sativum] (Gypsy_Ty3-family)
VRKEVLKLLDSGMIYPISDSSWVSPVHVVPKKGGTSVILNEKNELIPTRTVTGWRVCIDHRRLNTATRKDHFPLPFIDQM
LERLAGHEYYCFLDGYSGYNQIVVAPEDQEKTAFTCPYGIFAYRRMPFGLCNAPATFQRCMTSIFSDMLEKYMKVFMDDF
SVFGSSFDNCLANLSLVLQRCQETNLVLNWEKCHFMVQEGIVLGHKISHKGIEVDKAKVEVIANLPPPVNEKGIRSFLGH
AGFYRRFIKDFTKV
>GB:AAA28265 mariner transposase (Mariner_Tc1-element) [Chrysoperla plorabunda]
MEKKEFRVLIKYCFLKGKNTVEAKTWLDNEFPDSAPGKSTIIDWYAKFKRGEMSTEDGERSGRPKEVVTDENIKKIHKMI
LNDRKMKLIEIAEALKISKERVGHIIHQYLDMRKLCAKWVPRELTFDQKQQRVDDSERCLQLLTRNTPEFLRRYVTMDET
WLHHYTPESKRQSAEWTATGEPSPKRGKTQKSAGKVMASVFFDAHGIIFIDYLEKGKTINSDYYMALLERLKVEIAAKRP
HMKKKKVLFHQDNAPCHKSLRTMAKIHELGFELLPHPPYSPDLAPSDFFLFSDLKRMLAGKKFGCNEEVIAETEAYFEAK
PKEYYQNGIKKLEGRYNRCIALEGNYVE
>GB:CAA56856 planarian mariner-9 gene (Mariner_Tc1-element) [Girardia tigrina]
MEISEIRILMKYEFHRGATTRQAVGNINSVYPTQAVTQTTVAHWFKRYRSGDFDLSNQPRGRPEIKVDNDALKADVEADS
SQSALELASKFGVAKSTILIHLKQINKVKKLDKWVPHELKDEHKQQRLDACLSLLSRNKADPFLHRIVTCDEKWIMYDNR
KRSSQWLDPDEPPKHCPKRKVHQKKLMVTVWWSSYGVIHYDFMVPGTSITSDVYCSQLDDMMEKLAIKQPKMFNRLTPIL
LHDNARPHSAKNTVAKLQQLGLETLRHPPYSPDLAPTDYHFFQSLDNFLSGKNFTSSGAVKTAFQEFIDSRESVFYTKGL
NVLPLKWQQCVDNMGGYFD
>GB:AAC16610 transposase (Mariner_Tc1-element) [Drosophila simulans]
MSSFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL
LDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWI
FFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNTARYQQQLINLNRALQRKRPEYQKR
QHKVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDE
FYWRGIHKLPERWEKCVASDGKYFE
>GB:CAA38131 TCB1 transposase (Mariner_Tc1-element) [Caenorhabditis briggsae]
MDRNILRACREDPRRTSTDIQLSVTSPNEPVPSRRTIRRRLQVAGLHGRRPVKKPLVSLKNRKARVEWAKQHLSWGPREW
ANHIWSDESKFNMFGTDGIQWIRRPIGSRYAPQYQCPTVKHGGGSVMVWGCFSDTSMGPLKRIVGTMDRYVYEDILENTM
RPWARANLGRSWVFQQDNDPKHTSGHVANWFRRRRVNLLEWPSQSPDLNPIEHMWEELERRLKGVRASNANQKFAQLEAA
WKSIPMTVVQTLLESMPRRCKAVIDAKGYPTKY
>GB:AAC28261 transposase (Mariner_Tc1-element) [Drosophila teissieri]
MSSFVPNKEQTPTVLMFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL
LDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWI
FFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGATVNTARYHQQLINLNRALQRKRPEYQKR
QHKVIFLHDKAPSHTARAVRDTLETLNWKVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDGWFAAKDDE
FYWRGIHKLPERWEKCVASDGKYFE
>GB:AAA39398 ORF2 [Mus musculus]
NNQESNHSTNQKEDSHKNRMPTLTTKIKGSNNYFSLISLNINGLNSPIKRHRLTDWLHKQDPTFCCLQETHLREKDRHYL
RVKGWKTTFQANGLKKQAGVAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYAPNARAATFIRDTLVKLKA
YIAPHTIIVGDFNTPLSSKDRSWKQKLNRDTVKLTEVMKQMDLTDIYRAFYPKTKGYTFFSAPHGTFSKIDHIIGHKTGL
NRYKNIEIVPCILSDHHGLRLIFNDNINNGKPTFTWKLNNTLFNDTLVKEGIKKEIKDFLEFNENEATTYPNLWDTMKAF
LRGKLIALSASKKKRETAHTSSLTTHLKALEKKEAHSPKRSRRQEIIKLRGEINQVETRRTIQRINQTRSWFFEKINKID
KPLARLTKGHRDKILINKIRNEKGDITTDPEEIQNTIRSFYTRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPIS
PKEIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPIS
LMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMI
KVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEE
VKISLFADDMIVYISDPKNSTRELINLINSFGEVAGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIVTNNIKYLGVTLT
KEVKDLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVWNNKKP
RIAKSLLKDKRTSGGITMPDLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFNN
WCWHNWLLSCRRMRIDPYLSPCTKVKSKWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLM
KLQSFCKAKDTVNKTKRPPTDWERIFTYPKSDRGLISNIYKELKKVDFRKSNNPIKKWGSELNKEFSPEEYRMAEKHLKK
CSTSLIIREMQIKTTLRFHLTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWECRLVQPLWKSVWRFLRKLDIVLPEDPAI
PLLGIYPEDAPTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFLAKWMDLEGIIL
SEVTHSQRNSHNMYSLISGY
>GB:AAC72921 putative endonuclease/reverse transcriptase (LINE-element) [Lymantria dispar]
MDRYTPGRVKPRHLKIGTFNANSLTQQKDEVGTFLREHQLDILLVQETFLKPFNKDPRVANYNIVRNDRTTSPMGGTLIY
YKRSLHCTPVDPPPLMYIEASICRLALSGHQPITLVSAYLSPNREHSKQLVEKDLKALLELGGAVIIGGDLNAKNTSWSC
QSSNKRGKTLELFADRLGFDVIAPIEPTHFPFNVSHRPDILDIFLLKNINLRLCSIEVQHELDSDHRPVTLELASRTPGP
SGHNNERTKIATDWARLEKNLKSTSSVHLDQIPKDITSKEETSQAIDSLTSHVQSIMDDCSRPVPDTSDRKWRLPDDVRD
LLRRKNAATRAYDRYPTEDNRTRLRSLQREVKQAIKKLRQSKWDAMIEELEPSHTAFWQLSRSLKKDIVSTLPPLTRPNQ
PPAFMDDEKSECLADCLELQCTPSTLHPDAANHRFIADEVERRNTLSRSLGNDSPDQPIPAVTTDEVESLVRGLKTRKAP
GSDGISNKVIKLFPAHLIILLCCIFNAALNNNIFPAQWKEAVVIGIHKPGKRRTEPSSYRPISLLRGLGKIYERIVLSRL
RTFAEANNLVPDAQFGFRAKHSCVQQVHRLVEYTSSQFIMNRYTGVLFLDVAKAFDKVWHEGLIYKLYLLKIPHYLIHII
HDYLSHRSFRYRVEGTLSTSHPIKAGVPQGSVLSPFLFTLYTSDMPKFNRVHKALYADDTALFCAGRSPTTVARTLQTAV
TALANWFRNWRLEINPEKSQAVMFTRRTARSYSIDSIPPLKIFNKPVTWTRQAKYLGVTLDDRLSFAPHIKKVRARAAFV
MGRLHCLLNSRSRMPLSSKVRLYTTCIRPIMTYASVVFAHVKPHRIHRLQTLQNRFMRRATGAPWFIRNVDLHIDLELPT
IKQFMKRCSQSYFDSAMTHPNQLVVGAASYRPSKISSIRRPRHVLDEEDDIITLAQQRAYTAREALTNKYPRFRPRRRGA
KPRRAKVTTKNVGTSTLPPATPQAEVRSPQGEPLGDVA
>GB:AAC46493 nucleic acid binding protein ORF1 (LINE-element) [Drosophila melanogaster]
MDGHNGDQSEGWATVLSISSDDSNSLSSPPSIIVSSLDTTPTSHETTIVRRSLYQTNADMKSYDFENIVLNENKNTILPD
PLFVDKCGSTANTTEANEKKPANSPFPISISKNFSTSSPLTHVDTPTQEDDASAFNTLKAAKTARIIFPTHTHIKPTKPS
PPSKELSTNSALKTLSYTDKITGTQKNLPDKTHVDTPTQDDDINATKASKTAKIISTQTHLGETKPIQPAKDPSPRTQKP
IAHKADETLTHTDKLTASQNLVPAKTHINTPTQYNDTNATNALKTAKINFSSHSHQSEIKPTQSAKNISPLTQKQFTSES
AGTHTHTDKHKNTASQNLFSAKTHINSPTQHNYTSAATASKTAKLILSPHSHLSETKPTQPALSPSPLSQKQITSIAAKT
LTHTNKHTASQNFIPAKTHINIPTQYNDTNATKALKTAKAASPSHTYSRQTKPIKSAINALHPAQDTNPSPAISAVTYTD
KPTATQNIFPVKTFAELVRENAKRLPTPMQNSHQAKNDSAALGRPPTAARKNLNKTLISPKTPGKRRGDCLDEGLLQTSN
KKVRIRDDFSDDDLGVTNLLSETPLFKSKAAIKIRQDSRRDSLQKSAEMDTAPAISPSNTAADSDLPPWKTVPASRKPPS
IFLSNIQQIIPLIEKLNYKAGVNSFTTKSELGNNIRIQAKTMDAHNAIQNVLLEANIPLHSHQPKSAKGFQIVIRHLHQS
TPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHLKVLLLKSLGGQTVKVERKRVSKDPTQCHRCQC
FGHTKNYCRNPFKCMKCGQLHATVSCTKPKNLPATCANCNGSHVSSYKGCPAFQEAKQRLSINKIQSLHSQPTHLQTPRN
KHPYPKPTHLQTPRNKQPYTHPLPRTSVNNTKLPAKRIQGKKISQRNLSINKRLHRMKKPRKETSPPTTSKKVLASLEES
RKNPNSVLNPANTHLTHFRPPPLAQNIPNDEPKELSGEQYLLNRIEGMEKKINNLLEIVTRLLRQGKDCPKSPKNPFRDP
IFV
>GB:AAA53488 putative nucleic acid binding protein (LINE-element) [Anopheles gambiae]
QCCAVITRDFAMAAICFSCAEPLEATGCIISCAYCDATFHRGCCKLPPELIDAVLSNVDLHWSCIGCTNMLKNPRCRSVK
EIGAQVGFQAALNSAVAAIGKLVEPIVAEVRSGFTLLQTASTPHNRNSDPRPATGRKRRRIIEDSASPGVNKIVNSRGNT
LCAASSPNAYTNTTIAVQPAPTQPHELVGTDPLSSPLQAAPREPFTDRIWIRLSAYQRPSLWNKWSLSVKRRLATDDVIA
YCLLRRGVSVDSMNWLSFKVRVPAILRDAALTPSTWPVGIGVREFFQSRQHDHQTSSPIATRNRFTTRTPATSTEHRYTT
RTPTTTHRLAARTSTPPDPETTSSQQCHPPVNDTLEAPNSTLVSGPPQNHRASSPHLHQSTIDRFFLN
>GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) [Mus musculus]
MPPLTTKITGSNNYFSLISLNINGLNSPIKRHRLTNWLHKQDPTFCCLQETHLREKDRHYLRMKGWKTIFQANGMKKQAG
VAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYAPNTRAATFTKETLVKLKAQIAPHTIIVGDFNTPLSPM
DRSWKQKLNRDTLKLIEVMKQMDLTDIYRTFYPKTKGYTFFSAPHGTFSKIDHIIGHKSGLNRFKNIEIVPCILSDHHAL
RLIFNNKINNRKPTFTWKLNNTLLNDTLVKEGIKKEIKDFLEFNENEATTYPNLWDTMKAFLRGKLIAMSAFKKKRERAH
TSSLTTHLKALEKKEANSPKRSRRQEIIKLRGEINQVETRRTIQRINQTRSWFFEKINKIDKPLARLTKGHRDKILINKI
RNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINSLPAKKSPGP
DGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQE
HIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGQYLNMIKAI
YSKPVANIKVNGEKLETIPLKSGTRQGCPLSPYLFNIVLEVLARAIQQQKEIKGIQIGKEEVKISLFADDMIVYISDPKN
SNRELLNLINSFGEVAGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIATNNIKYLGVTLTKEVKDLYDKNFKSLKKEIK
EDLRRWKDLPCSWIGRTNIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFIWNNKKPRIAKTLLKDKRTSGGITMP
DLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFNNWCWHNWLLSCRRMRIDPYL
SPCTKVKSKWIKDLHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVYKTKRPP
TDWERIFTYPKSDRGLISNIYKELKKVDLRKSNNPLKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFH
LTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWDCRLVQPLWKSVWRFLRKLDIVLPEDPAIPLLGIYPEEAPTGKKDTCS
TMFIAALFIIARNWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFLAKWMDLEGIILSEVTQSQRNSHNMYSLISG
Y
>GB:AAC34903 reverse transcriptase (LINE-element) [Anurida maritima]
VGVQGEVTSLRLLCQQDSEVYATTMNRKNNYTRGNRFSSGSPGNFVVVRDPAQDLPFKCAFCERTFTTSNGKGLHELRSH
PKEYNMRVPVAKKRARWSEEELSQLAEAEHDLKSKKQYASELDLSRDLEGCMVGRSLESIRGQRKLPRYVEIFNRLSNSR
ASIPEIGEGDEEANSVGSDEVFHASGHGTGITEALEVLVSKRPGEAFREEVLNGIVRAKLEGSEVFVRLEQYLSRMFVGQ
SSLASTPCSSGEGKLPLTCSGSNKKEQRSDLFSRFPEKGPSVSVSAPSVSDMGRKRRKALSRNEATQVREEFVEFARNVD
PIPRRKCARVNEGLQGNQRLPKEKPMTARAKMRHLRLLRYRRLQELYKKDRSLAAKQVLQDMLDSKPGRNPEAVKYWAET
MGKESTGIDVSVMTGRPRYRDNVWSPIYPGEVSAAVKLMDSSGATGPDGFSVRSLKCTPSRVLAKVFNLFLLEEKLPAFL
MTSRTVLVPKVKEPKAPTDYRPISVSSTLVRLFHKILARRLTLASGLDSRQRGFVPVDGCAENLVVLESAIRSAKNYKRS
LFVASMDIKNAFGSVAHEAIFEALSKSGAPDSFVTYVRNCYDGFASVVKLGRDTAQTTVRQGVLQGDPLSPILFNLVIDQ
IIRSLPETVGVQLDANTKLNSMAFADDLILLSSSEAGMRRMLGVLAGVSSKFGLIFHPGKCKYLAMIWAGKQKKMKIATD
LSFEIGGGFMTPVGVTETWKYLGAYLGQIGIQPARLSLQTFLERIAKSPLKPQQKLYLIRVHLLPKLIYPLVMAPIRASM
LNKLDRMVRVALTGKDGILHLPQSVPSAFFYAPIGEGGLGLMELRTSIPAMVKARFERMMNSTCHHVRAAAKGAANSNRI
ALANRFLRKTADGIPVTSAKLVKEYQAAKLHGSFDGKPLSEAGRVKGIHSWTCDGRMVMTGQAFCEALKIRINALPCLSR
YNRGTEKPRECRAGCKTTESLNHVLQVCPRTHDMRVARHDKLVNRLGGYLSQKGFEIHTEPRIITSLGLRKPDIIAIKGE
KGVVLDAQIGGAANLNAAHDAKMCYYSSSPEIKEWVTGKGAPDVSYGACIVSPQGIMSEESWKTLRGLGFSKGMLNSLVV
TVMEQSTYVWHVFNRSTASYGWKRRRKRKWD
>GB:BAA89703 transposase (ISa-element) [Synechocystis PCC6803]
MISNFGHIVKTYLSNFPKDDYPVLDTFKFVSIWLGLVLDQSQTSMRSMFKRLNLRGETVDISTFSKASKKRDVGVFREII
FSLKKELSKRKEIKQGELEIFPLDSTIVSITSKLMWNLGFHQVKVFSGINLSTGIPGGIVIHFGQGHDNKYGNETIEETP
ENGVAVMDRGFCDLQRIKRLQKENNKYHVLRIKNNIKLEKLANDNYMVGTGKNKIESRVVIFTHDNSEFRLVTNLPIESK
EIEGVSDEKIAEIYKKRWQIELLWKFLKMHLKLNRLIAKNENAIGIQIYTCIIAYLILKLLVIPKEAGTTMLDKLRYLQA
FMCEKISYVHWLRELALR
>GB:AAA25194 transposase (ISa-element) [Lactococcus lactis]
MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGIMTNTKRVGKLMHLMGLYAKGSRYKYKHYNRKGASLS
RPNLINQIFKATAPNKVWLGDMTYIPTKEGTLYLAVNIDVFSRKIVGWSMSSRMQDKLVRDCFLQACGKEHPQPGLIVHT
DQGSQYTSSRYQSTLRQVGAQSSMSRKGNPYDNAMMESFYKTLKRELINDAHFETRAEATQEIFKYIETYYNTKRMHSGL
DYKSPKDFEKYNS
>GB:CAA35244 ORF1 (ISa-element) [Mycoplasma hyopneumoniae]
MKSKISNNKSTKVSKNFDSKDQLNSSISVLEKLKLLEEKNNHFKKREKNLEKEIKLLKKEIEALKKWKALVEIFDSNQPR
QEKIKKIYNKVKADKNLRLTQVLKEFSPISTFYYELKKEDFDKKNEEIISQVKLIFEENKARYGKRRIKAEFNNRGYKIG
LKKVRRLMEKFNLKAICPRRKYKSYKGTVGKIADNILNRNFVANKPNQKWTTNVTEFSGPFGKAYLSPILDMFNGEVIAW
DLSISANNQQIRKMLQRAFSKHKNLEGLIFHSDQG
>GB:BAA01402 ORF1 (ISa-element) [Bacillus stearothermophilus]
MTTFIEKHSDQYPTKTLCDVLGMPRSTYYKSLQHVESNRNRENKELTKKIIEIHTESKQRYGAPKIHFSLQKEGYSVSLK
RVQRLMKEAGIKSIVLKKYHPYSSKQQVVERENLLEQNFSTKSINEKWMADITYIHTLRDGWCYLASVLDLHSKKVVGYS
FSRTMTTDLVMKALENAYETQAPEEGLILHTDLGSQYTSEEFAKFVQSKGMKQSFSRKGCPYDNACIESFHAILKKEEIH
HVKYLDFQEAKWALFQYIEGWYNRKRIHGSIGYKTPQEMEDNIHRTA
>GB:AAA25195 ORF1 (ISa-element) [Lactococcus lactis]
MQKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLELKRQLAKVKEERDILKKVLTI
FAEKKK
>GB:CAA35936 unknown peptide (AA 1-296) (ISa-element) [Shigella sonnei]
MMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGI
RVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYI
VGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAK
VIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
>GB:AAB00676 transposase (ISa-element) [Enterococcus faecium]
MTMNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRDINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDET
YIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRT
IKYLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKVLLGIPA
>GB:AAD16446 transposase (ISa-element) [Mycoplasma mycoides mycoides SC]
MSIGVPRPDNKGFVYRLGYGYLHELKQYHDDPLAIIKAIIANFPLSWTKEQARTKLDEIFKEKKETKKEVLERFKGYEVV
EKLFDYFNIFNDCSPTKSTTLKDVVLQLIYQRIKNPISVFNTYKTAKKEKIDTHSKNSFYRSLDYIAKNKDEILRNLNAK
ICANTNRKIDVLWFDATTTYFETFSREGYKKPGYSKDGKFKEDQIVIGMATDENGIPLHYKIFPGNVADPNTLIPFMLEI
ADIYEVNSVTIIADKGMSVNRNIRFLESKNWKYIISYRMKAGSKQFKEYILDEKDYINDGGLIYKTRDIASSYNKKRING
HFRRQIISFSQKRATKDKNDRDILIQNFTKKMNKDNLVSCDDLAGSKKYRFFKPINKGAFYELDIEKIQEDQKYDGYYVY
ETNRTDLSVKEVINLYSKQWQIESNFKTLKGKLSLRPMYLSTWNHIVGYICLCFISLVFLNYIIYILNSKLGLTGKSKIT
EHKVINVIKEVKEIEVFVNKQKIETIQVYNDELQESWQTYQILLELLTKEKVT
>GB:BAA83477 transposase (ISa-element) [Porphyromonas gingivalis]
MSTNISLFAQVIRLLPRPLIKKLSTEFQVDKHSKHFTSWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPS
KSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALNDWAKYTHTKGAVKLHTLLDFE
TLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQIL
VDQRVRLTGVQKQGKYTKPLRHIALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRN
AVEVQIWTALITMLLMVYLKSIAKYRWCLSNLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF
>GB:CAA30087 ORF C (ISa-element) [Escherichia coli]
MFFKDILISSHTILPSLVRVQNRMLVRIKLFECLIEHILNHVHHWSFRKAVRNNFVVEEIYYWRQIQLAPIDCKFSNIGN
PLLVWPRSLEISLENIRGGLPYLSSVRAVSLDLNRCFK
>GB:BAA78795 transposase of IS1353 [Plasmid R100] (ISa-element)
MYSYEDRLRAVRLYLKLGRRMSATLRQLGYPTKNSLKAWLAEFERNQDLRRGYQRIKRQYTDEQKQRAVDHYIEQGYCLS
HTIRSLGYPSREALRAWIRDLRPEFARTVVGSSAPTVARSRLEKQQAVIALNLRVGSAKDVADTVGVSRPTLYNWQHRLL
GKVPLKPMTKKKGDTSLEQRHEALLRELAELESQNQRLRMENAILEKASELIKKDMGINPLELTSREKTKVVDALRVTFP
LANLLCGLKLARSTYFYQRLRQTRPDKYTQVREVIRTIFEDNYRCYGYRRIDSALRLGGMRVSEKVVRRLMAQERLVVRT
PRRRRFSAYAGDPTPAVPNLLNRDFHASAPNTKWLTDLTEIHIPAGKVYVSPIVDCFDGLVVAWNIGTSPDANLVNTMLD
HAVRTLRPGEHPVIHSDRGSHYRWPAWIRRTENAQLTRSMSKKGCSPDNAACEGFFGRLKTELIYPRNWQHVTLKDLMTR
IDAYIHWYNERRIKVSLGGRSPIEYRHAVGLMSV
>GB:CAA63546 orfA (ISa-element) [Escherichia coli]
MKHSFEVKLAAVNHYLAGHAGIISTAKLFQLSHTSLSHWINLFLLHGPRALDCRHKRSYSPEDKLCVVLYALGHSESLPR
VAARFNIPSHNTVKNWIKGYRKSGNEAFIRCRKEKSMTRSDDTHENEANMTPEEMKNELRYLRAENAYLKAMQEHLLEKK
RQELEKKRKSSRA
>Pi_model.supercont1.96.1.1 1393 (hAT) hAT family transposase [Phytophthora infestans]
IGKVVAAVETKISAELDGPFGIMFDGWTCLLEHYVALFAVFWHDRQLKQALLAIAPMEEGDLTAQSHCAFMRNIMAIFHQ
SESSLAFLIGDNCTSNQVAATNLSVPLIGCASHRFNLAVNSYLEKHKTTVEAVSTLMAALRTVNNRAALREHTPLAPLRP
NATRRSSTFDMVARYVRIRDDIKQVDAVFDLIPKAAMHRKIEALLGDLQVFHSVTIKLQSEDLSLADVRKLFDSVVHCFP
SLKPKLGATASIVHYPVFEAATVKVINGETGSLTTKERKAIKRFEVTAVPSLTGRKRKNDDDNGEEKTEEEEDFATAVLR
AKHASAVAQRPSKYCQLLENLPPTSNRCERLFSQAKLVLSPQRASLLPVNSEMLMFLRANRSYWDVTTVQEMF
>gi|78187731|ref|YP_375774.1| (TyrRecombinase_Crypton) Site-specific recombinase XerD-like [Pelodictyon luteolum DSM 273]
MQKSDETRQRFLELIERLDGAYAPNTIRAYRADMEEFIGYCDLHGLPALPAEPSTIARFLESVTDIGIKSSSIRRKSCSI
SIIHQLSDLEDPTKSEAVKIALRKVYRKLGRRFTEARPITRPMLEAMLPEPEGDLRSKRDRALLLIAYDSLRRRQELTSL
RTEDIAYHEDFAIVQLRKNKDDRLSTGHWIRLGNEATLALKAWLDAAGIEEGYIIRGVTNKGEISAELGARQIGRIVNRL
ARAAGFDAEMVQSISSNSLRIGGAQDLLRSGATFAQIMQKGGWDKTDTLLRYLERTRQPGMICEEGSPYRTAAGGEEDIG
DEADNGEKCSCPGYRDTLARRRFQSTLEQMEGAYAPGTLVGYHSGMESFIRYCEEHRLAALPASPMTVADFIGSLSESGM
KSRTIQKKVEAISVFHRLGDHDDPTRASYTRIAMRKVYRKLGRQARQAYGITRPMLEGMMQAAGDRGIHTLCDRALLLLA
YDSLRRRQELVGLRIEDLEYTEDGAVLLLRKSKTDQYGVGHWIHLNPETACTLKAWIEAAGLTEGFILRTIDRKGEIKTP
LRTEEISAIYKRLAEAAGLDAAIVGRISSHSMRVGAAQDMLNSGATLTEIMQKGGWMKSDTVMRYIDRTRPPGLVCEDEE
TKPRCGEDD
>Pi_model.supercont1.27.1.1 1375 (hAT) hAT family transposase [Phytophthora infestans]
MQRVAERVGNTIAEEMGECFGVMFDGWSSGTRHFVAVFVVYHGSDGLCERLVGLAPMKDGQSADAHIEFIDAILDVYGKT
LAMVKSVVADNCATNKSVATKLDVPLIGCASHRFNLAMVRFLSNHEHLISMIQRLMTSLRQPNNAAQLALHTALLPEKAN
ATRWSSVWKMVHKYVCIRDAAKHVAEVEELLPRLCEHRRIRVLHDKLKELQSVSEKLQHHSRTLGEVRALFDACMAMYPV
MEEYLKPTAEIVHSPVFEAAVIKVTSALPVSSAEAKAIEAFRRPESPGQSEDEPAADFASEILRRAKKPRYFQRRAVDYI
SLLSVFPPTRNRCERLFSECKYVLEPRRASMRSANFERLMFLKANRDLWNASTLV
>Pi_model.supercont1.7.19.1 1321 (hAT) hAT family transposase [Phytophthora infestans]
IVLLFEVVEGRVASELPESFGLVLDGWTSSNRHYVAIFAVFDSATGNTGKTGSCAASEYYEDLECLSRRFVLLAFSAVET
DEDLSAQSQYDLIADTLSRYNKPWSAVKFMVGDNCSVNQYIGRKEGGIPLIGCASHRFNKAVKNFLNNEDELITKVYTLM
SKLRTIKGRAILRRVSHLSPLLRNDTRWSSTYEMVERYAKLQPAMVQLGLNVEETLILLPRLRLWRPQGLSAGRRHLHGR
RRGRGLPGRFGHRGRNPGRHDDEASHCCVWKAARSQCLALEEATDVQARRRDVCSSIEGQRTQSALAGAINAAVESVREA
L
>Pi_model.supercont1.1.24.1 1404 (hAT) hAT family transposase [Phytophthora infestans]
IVLLFEVVEGRVASELPESFGLVLDGWTSSNRHYVAIFAVFDSATGNTGKTGSSAASDYYEDLECLSRRFVLLAFSPVET
EENLSAQSQYDLIADTLSRYNKPWSAVKFMVGDNCSVNQYIGRKEGAIPLIGCASHRFNLAVKDFLKNEDELITKVHTLM
SKLRTIKGRAILRRVSHLSPLLRNDTRWSSTYEMVERYAKLQPAIVQLGLNVLVEHDVQPLLLRRAEHERVKALLKDLAA
FEAVTKELQKSTLTLSASRRLFDQVVKEYPALQPRLSTAASIVNNPNLEQGLVKLQRGEALNVAEKLACAEYRSPDLERS
SSRVAEECSIVRAAFKKRKVVKRSHYVDVAYIPPTSNECERFFSLAKLVLSDLRKRMSPARLEMIMFLNYNRDLWDLSAV
DKVR
>gi|161789179|ref|YP_001595719.1| (TyrRecombinase_Crypton) phage integrase family protein [Vibrio sp. 0908]
MIENQLSLLGDFSGVRPDDVKTAIQAAQKKGINVAENEQFKAAFEHLLNEFKKREERYSPNTLRRLESAWTCFVDWCLAN
HRHSLPATPDTVEAFFIERAEELHRNTLSVYRWAISRVHRVAGCPDPCLDIYVEDRLKAIARKKVREGEAVKQASPFNEQ
HLLKLTSLWYRSDKLLLRRNLALLAVAYESMLRASELANIRVSDMELAGDGTAILTIPITKTNHSGEPDTCILSQDVVSL
LMDYTEAGKLDMSSDGFLFVGVSKHNTCIKPKKDKQTGEVLHKPITTKTVEGVFYSAWETLDLGRQGVKPFTAHSARVGA
AQDLLKKGYNTLQIQQSGRWSSGAMVARYGRAILARDGAMAHSRVKTRSAPMQWGKDEKD
>PITG_02404 (TyrRecombinase_Crypton) /1587
MGLEELQPGNTLRAKATAVAAFFKFLKGEDVEEEYVKKCIEEDESGKSFVCVMDKFGIHLAFSEGKKAKIWLLEQFPQHR
ASLESRLLKIGKTLDNFRLKRDGGGFVAKAPPCTKADLKKMGVYLYVNACSESDYQDAALLCLLWYLFGRASDLSMIKKR
NISIDAASVFFLRLVRVKTSEEQDLSLFPDADFATCPLLAVALALSVQAAPCLALIGNLPDQVQQTPTTLSPDVPLVELL
SAPPATFGLATPAPPPPRTAAAPTIYAHVNRVLDRVAPAAGVSAALTSHSFRRGGAQPANGCEKMTARWIFDRGSWNLST
TNKGFNYIFNTNLSSFDADTLDAIAEFHRVLFAACYQLETESFNINRKVLDVLTACVVRHYPVVKGLNPDSPAVQRLETC
VTQAGRTLPDLLAWSTHLAG
>gi|125849365|ref|XP_691930.2| (piggyBac) piggyBac transposase [Danio rerio]
TPLDYFEQYMDRDLMMTIAECSNAMSLSKSGEPLNVTTDEIYHFFGACILMSCIRYPTIRMYWSKALKITAITDKFTRAR
FFKLRGAIKVVIDHDVPEDLRMSDKFWKVRPFLDRILQGCLSLNRPDCACIGEQMIPFTGACPYRQYLPMKPNPIGVKNF
VCATADGIVLDFELYQGTGSLIGKVEEPEGLGLGCLVIERLCQTLHRGTKVYCDRFFTTIKGAQRMMEKELYMTGTIMNN
RLAGAKHKLPSDKAMISMGRGTSSEVSTEDGKLCVVKWYDNKPVLLMSVIHGTQPEDTCQRWDKNLKQYVTVSRPSIVRE
YNNNMAGVDLMDRMIGYYRMSTRTKKWTMRMVMHFTDLALANSWLLYQKDHAIRKTRPIQFLQFRMEVATILLA
>gi|37927778|pdb|1Q3U|A (TyrRecombinase_Crypton) Chain A, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp Synapse: Pre-Cleavage Complex
FQVPMSNLLTVHQNLPALPVDATSDEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLL
YLQARGLAVKTIQQHLGQLNMLHRRSGLPRPSDSNAVSLVMRRIRKENVDAGERAKQALAFERTDFDQVRSLMENSDRCQ
DIRNLAFLGIAYNTLLRIAEIARIRVKDISRTDGGRMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNN
YLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWT
NVNIVMNYIRNLDSETGAMVRLLEDGD
>gi|163704950|ref|ZP_02122961.1| (TyrRecombinase_Crypton) integrase-like protein [Methylobacterium nodulans ORS 2060]
MEFDPADPAPAPPHGSSFALSVPLAAALPPGPALLERLEAYARAAQGAFAPNTLRALAADSRIFAAWCRAHGRSVLPAAP
QTVADFIDAQAARKSRATVERYRSSIAMLHRAAGLPNPCTDERVRLAVKRMSRAKGRRQKQAEPLNRPSIDRMLAVKTPE
RLHRRVAEGDREVPLIALRNAALMAVAYDTLLRRSELVSLLIEDLERVEDGSGTILVRRTKTDQEGEGAVKYLAPDTVGH
VSAWLEAAGLTSGPLFRPVTKGGRVGAAALGRRGGARLYREIALAAGVKLARPPSGHSTRVGATQDMFAAGFELLEVMQA
GSWKTPAMPARYGERLRAQRGAARKLATLQNRA
>gi|117676314|ref|YP_863890.1| (TyrRecombinase_Crypton) phage integrase family protein [Shewanella sp. ANA-3]
MSLLTTNNHSVALSYGEPPSTLNDSLKDSYQRSTDELQALLSKPLAQLTDADKLRIREITQAKLKHFLDNGHRTRRANTW
RALMSRWAKFESWCLTNNLTPLPATPEVVATFIEYYQASSYTTLSQYAWAINSFHVECGLLSPVSSKTVQDKQNEIRIVK
LESGGLAQEQATPFRLHHLQMLIESYGESERLLDKRNLALLNIAYESLLRESELLRIKVGHLKSTFEGDYVLSVPYTKTN
DSGEEEVVNITPLGFKLIQRYIQGAGLTKEDYLFQPIGRSNKVSVQAKPMSTRTVDRVFLWAFESLGIDRHSAWSGHSAR
IGAAQDLLAAGYSIAQIQENGRWKSPMMVLRYGKDIKAKESAMAKMLAERR
>Pi_model.supercont1.9.9.1 1402 (hAT) hAT family transposase [Phytophthora infestans]
LDGMVLAVVPSIVKILPTRFGIVLDGWTSGGRHFIAIYAVFDDKDSIEVPRKSDYQDDLECHSRRFILLAFSPMEDEGAL
SAQSLFDLIADTLSRYKQPWESVAFMVGDNCSVNQCIGRRVEAIPLIGCASHRFALAVKDFMKQDEGLIDKVHNLMKKLS
TIKGRALLRSHTSLSPVTRNDTRWSSTYEMLRRYTKLEPVLRSLDDETVAASELEPLLLKRSENIRVTSLLADLTNFESV
TKTLQGTSLTLSAARRLFDHAISKYPELKPRLSPTAAIVNYPALESGLVKIQRGQSLTPPERAACAAFRVTSSPDEDQAE
ESPQGPSFAAQALKRLKTTKRGAYVDVGYVPPTSNECERPFSRAKLIFSDVRKSMDRVTLETLVFLHCNRSLWSVYTVEE
VR
>Pi_model.supercont1.3.11.1 1602 (mutator-like) mutator-like transposase [Phytophthora infestans]
ILERLKAFDICKSNTLVCTVCTLAVDPHKMRYRLLKCKSETCSEASEVACSWRGKLLTCLSTSRMSIYESGVHTTLLASP
QRKKKLTTAQKTFCRKMAAHHLRPQRIRHALARKFDTSLENLPGLQVVQNFMNHYSRSSLQNHDRVDEMRDWVHARVFTG
AEALDQPFTFAWRLDCDGRPVVGNGSNESPFVLGISTKTIIMRLHLPEDSFILHIDATYKMNHRGYPVVVVGVSDRSRGF
HLVALYIVSQETHCIFEEVLLSLRRQYYYLSGRELSVRNVMADADRAQYNASCTVFSDCAGFQFLMCFFHVIKNIQKAIK
GFPSVVSASLMRDVYNLHFARSEMEFNGLRGRFLLLWMQNPFLVGFAYYMRDQWLYGPFSKWQRYLTPSGFAATNNPSET
FNALLKRDYTLRRRLKMGTLVQELAACTHDLSSATRKFSFAIAVPATLTRRVSELMKERLIGVWNGVEPQPAYAGGHTLV
YVASQLAKRVQVAPHKRSEEGVAVSAQMGANYARMERMEVEGQPWGGWPVDITSRWCPCSYCYAFGVCVHVLYALKATQH
VDSSGRNVFVSRNK
>Pi_model.supercont1.46.8.1 1600 (mutator-like) mutator-like transposase [Phytophthora infestans]
VLSTLKTYEVTKCNQLACVVCPEDATHKMRYRLLKCASESCATSISSHGQACPWRGKTLSCMPNNAVSIFQVGEHVTAAR
SPRKKRLTPSQKTYVRELTLHHLRPMRIRHSMTRKFDMVLQDLPSLSTVQNFVQHYSRTHLMRNDRVDDLRKWIHERAFT
GDEALDQPFTYAWDLDVDGKPVVGNGSEERPFVVGLTTKTLIMRLMRPPESFILHVDATYKLNYRGYPVLVIGISDTSRV
FHLVSLFIVSGENQAIIQSTLMALRRLYGVLTGYKLVVQYVMGDADQAQYNAANAVFGNNPRFTSLMCFFHVMEKVYTAI
KAFPSDTKATIVRDLYDMHFARSHNEFVRMREDFLNRLMDGRGLTTFAQYINCQWLKGRFSTWQLYWTPSGFASTNNPVE
TFNAVLKRDYTLRRRLKMGALLQELSNCCQDKSASERAFSLDVVPSPTLVRRVSEMIREELLYEGWRDPGDIPSAGLVRV
ISCPAKRIQVSPNTRSEEGIAVSAQMGVNYARMEFEGQPYGGWMVDTTRMWCQCSYWFGFGVCVHVLFAQRTLEYLDCRG
QEILVTRGK
>Pi_model.supercont1.124.1.1 1473 (mutator-like) mutator-like transposase [Phytophthora infestans]
LLGSFKSCKIVKGDHVPCTVCTNAAPHNMRKRLLRCTCNECKATMPYAGCEWRGKLLKCEQEDLLDLFKVDSHVSTRRSP
RPPRITRAMQSFAHEMADQGLKPARIRTGLMRKFKLGPDTLPPLKVVQRFVYNYLAKTVGANDYLDDVRRMVRETAFTGQ
EQDFDAFSFVWRTKEKGRPHVGSGADANPFLLGVSSKKLLRQADRDPATFVLHMDATLKLNHVDYPVFGVGITDCWRKFH
LTAIFVSSQRKEIHLSEALMSLRKVYSQVTGKQLAVRFAMGDADDAQYNAVARVLGAGSEVKVLMCFYHVAAKVHEKTRR
LHYSLYPVVARGVHDLHFAASELEYEEVKTRMLNDWALIPGLESFTEYFKRQWLTGRFWRWQVFHTPPAFAVTNNPVETF
NASLKRDYTLRVRMKMGFLLRQLMACCTHESTTSRSFGVDPAPSVTLVGRASAMTRDFRRTAQQERVPAVL
>Pi_model.supercont1.20.3.1 1507 novel transposase Pi-A IRs plus 9 bp TSD
MRELFDRFPEVLMIDATHGTNVSKYKVFSIMAHDVFGKGQFVQHAVVQNERRPTLLTALDEFKKNNPAWSRTKCILIDKD
FTEISVLNVAFPDVVVLLCQFHVLKYLREEISSSEYGFTSWQKQQLLGIMNLLVYARTEHEFTKYRNYMRHVMSIERGGV
SRSSGAGPNWGHLVTESSELVTESSELVTESSELGTEISELGTVGNSLGVRTGLGMDSELRGAECGDRDDDLSKHPFEIY
FTKNWDTCRSMWCSFERQNAVTMGNNTNNRLEASWKQLKGLVDSFMGVDECIASIMCYQSQQEKKFVDDVYKLSLVHNIK
YDAEMQFVSNLVSEHACELIYEQYIYATRKGKYKYYEPAPDVYLLQHDCDDEDALDEPNSEYSITKRDWSCSCLFMCSRL
LPCRHIFFLRKVPGCENIIPTQLLNPRWLLASLRMTTDFPEFCGASFAVSRVMQEPNTVWDSNRKFREANSVASTFTEHL
SGLGMREYQTAMKVLREIATLFKHGEY
>Pi_model.supercont1.18.5.1 1572 (mutator-like) mutator-like transposase [Phytophthora infestans]
LLDTFKATAVMKSDVDPCTLCAVPEPHNMRVRLLRCSCEACANDVPYTQCTWRGKTQQCCVLDIVTVWEAGTHASRRQPE
RRIRLTEPMKVVAREMAAHHHRPIRIRNALLRRFNLSQNSLPSLAVVQRFVHHYRAAHLGGSDFWDDVSSFVRERGFTGQ
EELNEGFTFTWKTDGDGRPVVGTGTDMDSFVVGLSSKKLLQRCDQDPAAYVLHVDATFKLNQVNYPVIVVGISDCMRTFH
LLAVFISSQRTKVQYVEALSALKRVFRSVTGHDLAPRFVMVDADEAQLNGIDEVLASSIDGAKPVGLMCYFHVLAKVHEK
TRALEPLLAARVMRDIADLHFTATAGAYTEKKTKLLSDWEGDTRLTTFTAYFKKQWLDSRFHRWQVFHTQPGFATTNNPV
EQYNRALKRDYTLHSRLKMGALIEQLLQCCRTESLKEKAFALEVTPSPVLVRRARDLERAHKIRELVSGRSRVSFLLNNA
PCEEDHVYVASELCDRVYDPQARRTSESLPVTSRLSVQAARAEVRGMPGEGWRVNVLCRHCPCDYYLKFGVCTHLVFAMH
VRGLLDLSKRKK
>Pi_model.supercont1.6.2.1 1381 (hAT) hAT family transposase [Phytophthora infestans]
MKKCSESVGVLIESELGKLFGVMWDGWSHGITHYVGIYGVCYADGKRRERLLSLSPLEDGSQDAEVHIEMFKRVLALYNR
DISMVAFLVADNCATNQRIATLLELPLVGCASHRYNLAVYCYLAAYKPELAAVNSLMVQLRHVNNAAELSKFTDLKPVKR
NVTRWSSTFAMVDRYKKIRDSIRQVDAVDECIPKGAAHKKLLGLLEHLKKLDSVCKTLQREDTSMADVRVLFDLVVDDYP
VMASHLRPAAKIVHAPAFEAALVKICNNAKLTASESRAVQRLVVEPDAATGKRKERSTSDYASAILRGGKQMRAAGAAGV
SFHELAKVVPPTSNTVERLFSQCKLILTPQRSCMLSANFEMLAFLRVNRDMWNATSLVANE
>Pi_model.supercont1.5.26.1 1383 (hAT) hAT family transposase [Phytophthora infestans]
LEGVTRSVEAAIAAELPDAFGIMFDGWTHSSEHYVAVFAFYELDGVAKTALLSMAPVINEPDEDLSARTHREFLVGMFER
DYGKDVKCCKYLVGDNCSVNRRLATIMQVPLVGCSSHRLNRAVRQHMAQHDDDLAAVQAQLTKLRTIKQSAKLRFKTPLR
PVIRQDTRWGSTFAMVHRYFALLEFLDQDDEELQDLLPSAACNRRIKTLYADLKDFESVSKALQAESVSLLDVRVWFDGL
IEAHPAFAAFIGPRANIVHSPDFESGCVRVPKGNGARLTASEKRALRPFLEVATDPTNHSEEAEPESLVQRLEKRRRLEA
REARYCLVGSIPATSNKVERFFSIARTTLGHERNGLQPITLEMILFLRENSRFWDVSTVDQLL
>Pi_model.supercont1.19.1.1 1381 (hAT) hAT family transposase [Phytophthora infestans]
IALLYGYVRDVIAAKLPEKFGLVLDGWSSGGRHFIAIMAVIPCVSRRFVLLAFCPLGDEEDLGAQSLFDLIVDTLSTFKK
PWEFVLFMIGDNCSVSQAIGRTVGALPFIGCARHRFQLAVNAYLADHKPMLARIHALMKHLSTIKCRAAIRKVTSLALVM
RNATRWLSTFSMVQQYDKICSALLALDHATVAKHDIARFLLTPEETEAARSLLKSLHELYEVSKAVQDSTLTLVGARRAS
DAVLRNNPSMKTRLASDASVVNNPALESGIVKIIGGGRLKAREQAACIHLKRSSDDTVVNPAVSKSFLVSAFKKALVTRS
TPQYFPLEWVPPTSNECERFFSQAKLVLTDLRKAMDPNTFEVLMFLSYNKDWDAFSVKAIR
>Pi_model.supercont1.74.1.1 1384 (hAT) hAT family transposase [Phytophthora infestans]
MEAVTRAVERSIAVELPERFKLVFDGWSHEHFIAVFAWYEVDGALHCPLLCMAPLVNDETDDLSAATHRAFLETMLARDY
GKSLEQCIFLVGDNCSVNRRLADLVGVPLVGCASHRLNRAVSQRLGECAEDLDSVQAVMIKLRTLHHSAKLRFSTDLRPI
IRQHTRWGSSFAMVNRYFELLPFIDSEDDELAELLPHAASRRRLRDLLGELKDVESVAKALQGSNVDLLDVRVWFDSLIA
EMPSFARYLAPRADIVHSPDFESECVRVLKGQAKRLTRAEKAALERFTVVARAQDGAAGEVEADTNASFVERVQKRRRLE
ERQPSYDLVASIPPTSNIVERFFSISRATYGQQRHRLQPYTLEMLLFLRQNASYWDARTVEGAE
>Pi_model.supercont1.33.2.1 1382 (hAT) hAT family transposase [Phytophthora infestans]
MHLAAAKVGLILEEEMGDAFGIIFDGWTHGSTHFVALFCVYMHGGTFRRRLLSISPVVEGSQTADVHIDHFQRVLDLYNK
TLAMVLLVVGDNCSKNRSIATKLEVPLVGCASHRLNLAVQLFLSRYEVELDQVSTLMVQLRHPNNSAELAKFIELRPVKR
NATRWSSTREMVSRYIKIRGYIRKIEAVEEFLPSASAHRKIVALNEDLRVFDSVCKKLQDDETTMADTRLLFNSLLDRYP
DLGSHLDPSSKIVHSPTFENAVIRVANGSLLAAAEAKSVSKFASDRPTGVGDKRKRDCTPDFATTVLLEGSAARRTGRSS
VVYNALLTKIPPTSNACERLFSQTKLILTPQRGRLADANFEVLTFLRANLDMWNASTLVDTT
>Pi_model.supercont1.5.20.1 1388 (hAT) hAT family transposase [Phytophthora infestans]
MESLTRIVERQIASEMPQRFGLILDGWSHASEHFVAVFACYEVDGVVKTPLLCMAPLLSEPDEDISARGHYEFLAGMLPR
DFGKQLDACLFLVGDNCAVNRLLATLIGVPLVGCASHRLNRAVQVDMEQYEDDLSGVQALMMRLRTLKQSAKLRSKTSLR
PVIRQDTRWSSTFSMVHRYFKLLEHLDPTDDDIVDVLPAPSCNKRLLLLLKDLKKVVSVSKALQATSVTLLDVRVWFDGL
IALKPHYARFLGPRADIVHSPDFESACVRVLGGSQRLTRVEKAVLQPFRCLEEEEEHARTAAEAGDSGDEGSFVASLQKR
RRLAAVQPRYDLLSCIPPTSNLVERFFSVARTTYGQERHSLQPITLEMLLFLRQNGEYWSAQTVDEAT
>T19K21/T17A11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEAGIIYPILDSSZVSPVHVVPKKGGVTVVKNEKDELIPTRTIIGHRMCIDYRKLNAATKKDHFALPFIDQMLERLENHK
YYCFLDGYSGFFQIPIHPDDQEKTTYQRMPFSLCNAPATFQRGMMSIFTDMIEDIMEVFVDDFSVYGSSFEDCLENLYKV
LARCEEKHLVLNWEKCHFMVQNGIVLGHRI
>F17L24/F9B22 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSATRKDNFPLSFIDQMLERLSNQP
YYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQHCMKYIFSDMIEDFMEVFIDDFFVHGSSFA
TCLSNLCRVLQRCEDKHLVLNWEKSHFMVRDGIVLGHKI
>Athila6-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHYVPKKGGMTVVKNSKDELIPTRTTTGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFS
SCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGHKI
>F1D9 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LSSGTVQNSSSPYASPVVLVKKKDGTWRLCVHYRELNGMTVKDRFHIPLIEDLMDELGGAEVFSKIDLRAGYHQVRMSPE
DIHKTAFKTHSGHYEYLVMPFGLTNAPATFQGLMNAIFKPFLRTFVLVFLDDILIYSSSMEEHVQHLQQVFELIRSHKLS
AKLSKCAFAVSKVEYLGHFI
>MKD10 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKRFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNQVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSDYHQIPIAEA
DVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQKFLDEFVIIFIDDVLVYSKSHEEHEVHLRRVMEKLREQKLF
AKLSKCSFZQREMGFLGHIV
>F7P3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDTGVIYSISDSTWVSPVHSVPKKGGMTVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKNTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKI
>T26P13-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEKGFIRPNZSPWGAPVFFVKKKDGNMRLCIDYRDLNNMTIKDKYPLPRVDELLDQLRGASWFSKIDLASGYHQISISEP
DVMKTAFQTRYGQYEFVVIPFGLTNAPAAFMRLMNEVFHDYLDSFVIIFIDDILVYSWSAEEHREHLWKVMDRLREQQLF
AKFSKCKFWQREIGFLGH
>T12K4 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEKGFIRPSSSPWGAPVLFVKKKDGSMKLCIDYRQLNQVTIKNKYPLPRIDDLLDQLQGANWFSKIDLRSGYHQVRIRDG
DISKTAFRTRYGHFEFVVMPFGLTNAPAIFMDLMNRVFRPHLDEFVIVFIDDILVYSKSREEHAEHLRLILRRLKEEQLY
AKLSKCEFWLQEVGFLRHLV
>T26P13-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGFIYPISDSTWVSPVHCIPKKRRMTVVKNEKDELIPTRTITGHRMCIDYRKLNDASRKDHFPLPFINQMLERLANHP
YYCFLDGYSGFFQISIHPNDQEKTTFTCPYGTFAYKRMSFGLCNAPAIFQRCITSIFFYLIEEMVEVFMDDFSVYGPSFS
SCLLNLGKVLTRCEKTNLVLNWEKCHFMVKEGIVLGHKI
>F10A2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVFPVHCVPKKGGMTVVKNEKDELIPTRTITGHRVCIDYRKLNAASRKDHFPLPFTNQMLEGLANHL
YNCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPTTFQRCMTSIFSDLIEKMVEVFMDDFSVYGPSFS
SCLLNLGRVLTKWEETNLVLNWEKCYFMVKEGIVLGHKI
>F21I2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDVGVIYPISDSTWVSPVHCVPKKGGMTVVKNEKDELIPTRTVTGHRMCIDYRKLNVASRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMSFGLCNAPATFQRCMTSIFSNZLEEMVEVFKDDFLVYGPSFS
SCLLSLGRLLSRCEETNLVLNWEKCHFMVKEGIVLGHKI
>F12P23/T4D8 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LQCGIIRPSKSPFSSLVLLVKKKDGSWRFCVDYRALNRVTVLDKFPIPMIDELLDELHGTTIFSKLDLCLGYHQIRMRED
DIEKTAFRTHDGHFEFLVMPFGLTNAPASFQSLMNELFGPFLGKFVLVFFDDILIYSNNLTNHVKHLTLVMEVLAKHQLF
ANRKKCLLRQSQIDYLGHVI
>model.supercont1.6.33.1 (piggyBac) piggyBac transposase [P. infestans]
TPSGAFFYFMQPDLWEPIAEETNTYFREHIEERVDGLHAKQVVRERKNTGYKSKSKEKLRNELESSADITPRELCVFLGL
LIARSIVPNKAKLAHHWRTTDEGAIPRGCFGFFMARNRFMHLSRNLHFSRNGDERAATDRAWKLRPVIDALQNRFAAGYT
PPSIMAFDEAMLPLRSTFNRMRVYMKDKPHKWGTKLIMLCCSATAYCIRFEVYCGKKERAGGTSSTDYKSCPAAVVRNLR
AVFGPTAPADGSMRLVVTDRFYTAVPLSVQLLTMGFYSIGTVRTDRWGLSTKLIPKKQKGDKKKPPQIPKNRPSNIERGT
YSVAKALQVPDMKVVRWWDTRSVHMLSTGGSVAIDRIIRREKLTGEQQEVACPRIVKDYQTYMGGVDVHDQLRLQRYSLQ
LCIKYKKYYKSLFLGLVDLTIINVFIVYNARQTKANNPKLIHVKFLKQLHLELCQ
>model.supercont1.61.3.1 (piggyBac)  piggyBac transposase [P. infestans]
TPSGAFFYFMQPDLWESIAEETNTYFREHIDERVDGLHAKQVVRERKNTGYKSKSKEKLRNELENSADITPRELCVFLGL
LIARSIAPNKEKLTHHWRTTDEGAIPRGCFGFFMARNRFMHLSRNLHFSRNGGERAATDRAWKLRPVIDALQNRFAAGYT
PPSIMAFDEAMLPSRSTFNRMRVYMKDKPHKWGTKLFMLCCSTTAYCIRFEVYCGKKERAGGTSSTDYKSGPAAVVRNLR
AVFGPTAPADGSMRLVVTDRFYTAVPLSVQLLTMGFYSIGTVRTDRLGLSTKLIPKKQKGDKKKPPQIPKNRPSNIERGT
YSVAKALQVPDMKVVRWWDTRSVHMLSTGGSVAIDRIVRREKLTGGQQEVACPRIVKDYQTYMGGVDVHDQLRLQRYSLQ
LCIKYKKYYKSLFLGLVDLAIINAFIVYNARQTKANNPQLTHVKVLKQLHLELCQ
>model.supercont1.29.3.1 (piggyBac) piggyBac transposase [P. infestans]
TALGSFFLFAPPHLWEDIAGASDDYFLHNLDKRVGAQRAKQQARHRKDSNFEVKSQEQIKEYLLATPDISGREFCIFIGL
LIARTIAPNKERFDHHWKTTDEGAIPRGCFGHYMKRDRFAHLSRNMQYSRNDAPEAATDRAWKLRPVIIVLQHTFQRSFV
PPPVMAFDEAMLPSRSAFNRMRVYMKDKPHKWGTKLFMLCCSETAYCVRFEVYCGKRQMQDDSTPPDEKSGPAAVVRNLQ
HVFGPTGPSDFRLVVTDRLYTSVVLAMQLLTMSFYIAGTIMMNKQGLCEAILPAKQKNGRRASNKRLAHIERGTYEVATS
VHVPAMKAIRWYDKQGVHVLATGGSAQQDRIVRRDPITASEAEVLAPRVVKDYQTFMGGVDVHDQLRLQRYSLQLARRYR
KYYKSLFLGLIDLAIINAFIVFNCRRVRDGERKLSHVQYLKQLHLELCQ
>gi|56547708|gb|AAV92925.1| (piggyBac) piggyBac transposase [Phytophthora infestans]
KSASSSFFAFIPISFWKQVVTFSNGRAAETSGQLGAPIELEELMIFLGIQWYMTLVDKGEMRNYWFDNEDSNIFPGQSST
SLATVMSWKRYLYIRKILSFRPRTSAEELSSDPAASIRPLITILKIRCCRHVIPGRDVAVDEASIASKSKYARHIIVYNP
RKPTGKYHFKLYVCCCSTTWIVLDFKLHCSSDLKNRLANVISPAEIDRLAALTEKHVIEVTNSLRGSRRVVNTDNFYTSC
LLLESLRTVGLYGRGTVRSSSKHFPRYTMVGSTDTKRGTMKQGVCVEKHIVAASWVDGSVVNVISNADDSGTTTVYRRIR
QQREPFKAPKCVSEYNTAMQGVDRHDQLRGRFSVANGHTFKKWYKKLAMAMIDIARCNAYICHQMARRSNHGEDSPEHRA
FVASLVREMFD
>model.supercont1.79.1.1 (piggyBac) piggyBac transposase [P. infestans]
TALGSFFLFAPPHLWEDIAGASDDYFLHNLDKRVGAQRAKQQARHRKDNNFEVKSQEQIKEYLLATPDISGREFCIFIGL
LIARTIAPNKEKFDHHWKTTDEGAIPRGCFGHYMKQDRFAHLSRNMHFSRNDAPEAATDRAWKLRPVIIVLQHTFQRSFV
PPPVMAFDEAMLPSRSAFNRMRVYMKDMPHKWGTKLFMLCCSETAYCIRFEVYCGKRQMQDDSTPPDEKSGPAAVVRNLQ
HVFGPTGPSDFRLVVTDRLYTSVVLAMQLLTMSFYIAGTIMMNKQGLCEAILPAKQKNGRRASNKRLAHIERGTYEVATS
VHVPAMKAIRWYDKQGVHVLATGGSAQQDRIVRRDPITASEAEVMAPRVVKDYQTFMGGVDVHDQLRLQRYSLQLARRYR
KYYKSLFLGLIDLAIINVCIVFNCRRVKNGERKLSHVQYLKQLHLELCQ
>model.supercont1.61.2.1 (piggyBac)  piggyBac transposase [P. infestans]
TPSGAFFYFMQPDLWESIAEETNTYFREHIDERVDGLHAKQVVRERKNTGYKSKSKEKLRNELENSADITPRELCVFLGL
LIARSIAPNKEKLTHHWRTTDEGAIPRGCFGFFMARNRFMHLSRNLHFSRNGGERAATDRAWKLRPVIDALQNRFAAGYT
PPSIMAFDEAMLPSRSTFNRMRVYMKDKPHKWGTKLFMLCCSTTAYCIRFEVYCGKKERAGGTSSTDYKSGPAAVVRNLR
AVFGPTAPADGSMRLVVTDRFYTAVPLSVQLLTMGFYSIGTVRTDRLGLSTKLIPKKQKGDKKKPPQIPKNRPSNIERGT
YSVAKALQVPDMKVVRWWDTRSVHMLSTGGSVAIDRIVRREKLTGGQQEVACPRIVKDYQTYMGGVDVHDQLRLQRYSLQ
LCIKYKKYYKSLFLGLVDLAIINAFIVYNARQTKANNPQLTHVKFLKQLHLELCQ
>gi|110289187|gb|ABB47755.2| (helitron ORF)  [Oryza sativa (japonica cultivar-group)]
MSECATTARMKRKEYMQLKRGMKRARTDGNEEKGRADPTYISNMELKNTLSWNMTWPKCMCRLCQGPNGIYKNIKNVVEP
KYCNIQLMQLKEPSVINSAIIYSQLKKARRAKELAKIARMKRKEQNTLKRSRKGTRTNKNVITKEIISSDSKIWNFGGPT
CMCQHCHALMWHAERSLHSTVKQPSFGLCCKQGKVALPPLKEQPPYLTSLLTRDGGRSTNYQQNIRSYNSMFAFTSMGGT
VDRKINNGHGPYIFRLNGQNHHHIGTLLPEGSNKPRFQQLYVYDTENEIENRIEASKSGASNAPLDQKTIASLLKMLDEN
NTLAQTFRMARDRFKEDDYHNYTLRLLDNRDQDGRQDNMPSASEVALLIVKDPTKKSYGRDIVLEYKDMRPKRISETHPK
LMAMQYPLLFPYGEDGYRPGIKYSGKEGVRNDKKCVTMLEYYAYRLQQRQDQSMLPLMCGNLSMQYMVDAHACIEQIRLN
WIRQNQGVLRTELYGGLQDALRRGDTRTEQVGRRIVLPASFTGGPRNKEQNYQDAMAICRWAGHPDLFVTFTCNPKWPEI
QCMLDKVGYQKPSERPDILVRVFMIKLKELMSDIKRNQHFGKTKAIVFTIEFQKRGLPHAHILIFLDKRGKSLEPSQIDE
LICAEIPDRDKDPETFEAVKNFMMHGPCGEANPKSPCMVDHKCNRFFPRGFSDETIIDEVNFPIYRRRDDGRQIKKGRVN
LNNGFVVPDNKDLLAKFQVHMNVEWYNRSRSIKYLSTSICNEHDQAPAVVEETDEKNNDEIKKLSFHEENEQHVIFPDST
DLQEIVRRPRSGVTMFTEWMETNKRHEDARELTYSEFPTKWTWDKNVKKWVRRKGGMKIGRIYNAHPASGERYYLRVILN
TAKGCTTFEDIRTVNGTVHSSYKSACHALGFLNDDSEWIECIKEASCWASGMKLRQLFATVLCHCEVTDPKRLWESSWEK
LSKDIQHTQSWALNFPTSCLTPSHRRKCALIEIEKNMRQAGKSLKEYAGIEPPNMAKLKMNYDKEKLKHEHLQILNTLNI
EQKKAFDAIIESAHQSLGKLIFVDGYGGTGKTYLWKAITTRLRSEGKIVLAVASSGVAALLLQGGRTAHSAFNIPINLTD
EYTCFIKQGSHIADLLMKTSLILWDEAPMANRNCFEALDKSLRDVQRCRNENSCQKPFGGMTVVLGGDFRQILPIVPKGR
REHTVNATIKCSYLWQHFEVFNLTKNMRLNYVSKDQTEHQKSAEFAEWILQIGNGDTISLDEKGWVRMPSDLLLQKGDDP
KAQIIESTYPDLQDNCCKQNYLEERAILCPVNENVNELNEYIMDQIQGDKVTYLSRDSVSKSVSYSHEMEMLYPTEFLNS
LNHSGIPNHQLKLKVGLPVMLLRNINQSAGLCNGTRMTITRLGNKVIEAQIITGTHSGDMVCIPQIIMSPTEPKWPFMLN
RKQFPLSVCFAMTINKSQGQTLNKVGLYLPRQVFTHGQLYVAVSRVTSRDGLKILIADEECPGEGMVKNIVYKEILQ
>F23H6 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LNAQIIRPSVSPYSSPVLLVKKKDGGWRFCVDYRALNEATIPDKYPIPVIEELLDELKGATVFSKLDLKSGYFQIRMKLS
DVEKTAFKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFRPYLRKFVLVFFDDILVYSPDMKTHLKHLETVLQLLHLHQFY
ANFKKCTFGSTRISYLGHII
>gi|102139878|gb|ABF70031.1| (helitron ORF) [Musa acuminata]
MENPLFSPTVEWPNTNSSMSAHGPTVSPSDWAIPESTATPICFPQAPEETNEDDDGCSDISPGHMTHRQNIPSGQRHALL
TRRNNVFERLIGRNTGKSNKGEDHAEDNTPLPEATKTLDYTIKMCQLHLNNHFLMIQTMMRVIYLKTMRKRMRDTCLLVK
VFVPNTNYLPKHPLFLSDFHFYVQIISPEESDDDVQSDTTVEDMTSNLEGPDPYEVVYSNMPTETHKLKSVPNCHHCGAK
RFPKEPPGFCCRSGKVELNAPVIPSQLMRLWSSSDTDARHFRNNIRFFNGHFSFTSLYCRLDSATANIRNSGIYTFRAHG
MIYHNIRSFGREDGKEPRHLELYFYDDDPSLEYWYRRCREEQYQKDKEVIDRLVAILHDNPYSQHLRSLGHAEHLEDYRI
TLNLDQRLDQRTYNVPMASEVAAVWIEGSELLGQFQNSVVLHGKDRSRHGIRSYHGCYDALSYPLFFPRGELGWHMDIPK
KGVTMEDVNTALLTDSPGNLCVSVRDYYCYKFQIRPGIFNPILYGKRLFQQFAVDTYIKIESSRLDYIRNHQTEIRADLY
QGLVDSLHAGEGRSEAVGKRTVMPSSFIGGPRDMRRRYMDAMALVRRFGKPDIFLTMTCNPKWDEITRELYLGQTPQDRP
DLIDRVFRAKLEELKHRLLKKDILGKVRAHVYVVEFQKRGLPHAHFLLIMDRRYKITCPEQYDLLISAELPNKKKYPDLY
KMVTKHMMHGPCGVLNRNCPCTKGRESCKNRYPRPFCDATLQGKDSYPVYRHRDNGRKEKVRGHELDNRWVVPYNPYLLR
LFNCHINVEACGSIKAVKYLFKYIYKGHDRASVAVREADKEDNEGNIDEIKQYRDARWVTPPEALWRIYGFDISDRSPSV
LSLQLHLPNMHMVSFHQREGVRRVLNRPGVERSMLTTCFEKNITSEHARGILYRDFPEYYKWDSQGKQWIRRAQKNHLRQ
IGRVVCANPAEGERYYLRVLLNHVVGATSFIDLRTVSGELLPTFREAAERRGLIEADNTLHEGLAEATLWMMPYALRRLF
ATILVFCEPSDVLELWEKHKEAMSEDYRRNNQSNFAVEQMVLIDIRKLLESMQKDIKMYPLPDIDDTYDPSGNIPREIFE
EASIEASIDDMALSKTLNEEQQAAYNEIMSAIDSNHGGLFFVDGPGGTGKTYLYSALLATIRSQNKIAVATATSGVAASI
MPGGRTAHSRFKIPLTLDDGAFCTFTKQSGTAKLLQNASLIIWDEVTMMKRQGIEALDNSLRDVMECPNLPFGGKTVVFG
GDFRQVLPVVRRGSRAQIVGASLRMSYIWNSMRHLKLVRNMRAKSDPWFAEYLLRIGGGSEETNCNGEVHLPDDICIPQT
EKDSDLDTLIDCIFPALNADMSNKSYITSRAILSSRNDWVDMINMKMISRFQGNEMVYHSFDSAVDDPHNYYPSEFLNTL
TPNGLPPHVLKLKIGCPVILLRNIDPAGGLCNGTRLVVRGFQRNIVDAEIMVGDHAGKRIFLPRIPLCPSDDEMFPFQFK
RKQFPIRLSFAMTINKAQGQTLPNVGVYLPEPVFSHGQLYVAISRATARSNIRILAVPPSDKNDKKQKNNGTFTKNIVYK
EVLTP
>7000001773487431 (helitron ORF) [Phytophthora infestans]
MIRITREELDDRVQRARRENASQSHEESRKERHLRKQRLRSAEARYRKAIQELEQLELVETPAPTESGQMRASGPAVERE
EKTEEDDPAEHQRRFEEETRRDRQHDTHDFQIGMSGPTVDDSAAATRARDAERARVRRAAMTSSQKQRAREKDAERKRIR
RANRSESQAIRDRGRNAEQARVRRGRLEPEDLSVHRAYSRDAQANHRATRPEEASQNARIRDAVEHEARREGMSDEQRQS
ERDQNTASRRDHRGGMAYEQRQSERDQNTASRRDHRGDMTYEQRQAERDRDAAAHRARREAMTEEQRDQRKEHERFRRRS
RQYKKGLAHHESFDPSSVSGGRHYFTRYTDDNGENERVCHYCNAWKFPQETDGCCCRNGLVFVPTSRTAPDALLTLFENP
TFMRSIRAYNNVFAFTSMGASRSRPLSVDESVTRNGVYNFRVQGSVCHRMGSLLPPAFGRSMYAQVYFNDPDMDARVRSR
MNMTQGLDRAVMETIDQMMVAHNPYTQEFINARRFLIDRGWDAYAAAIREHERRREAGEDVDDHDPSLALSNFLPEGDHL
KLRLHVTRNANPGTHNTPTASEVAAVVIDTNAAEHRDIILHTTGGGFKRIFETSVTYDPLQYPLLFPYGDNGWTYDIPYV
GNPVDRHGDPLTMSVREYEAYLLYDRTVSNSLILRGGRLTQQYCVDQWAKCEQERLRFIKKNQLQYRLETLQGLTDALRG
ESVEIHRMAADDEAAIRRTRRGNYTEQESAEPDAGEVGRKIIIPPKFTGGPRYMYQRFLDAMAIVRETGAPNLFITMTCN
PNWPEIKENLRPGEKASDRPDIVARVFMEKLKALNKDLDEGVLGIQAARVHVVEYQKRGLPHAHILLILRPEDKPTTKED
VDKLVSSELPDKEKYPELYDTVISNMLHGPCGQQNPSCPCIKNGRCSKKFPKALADETVMTPDKYPRYKRGRRPDGILCH
KGKVWDNATINQWVVPYNPFLSQKYNCHINVEVCATNKAIKYIYKYVYKGSDMTTITIEGEEIRANEILQYLLGRYIFPV
EACMRLFMHPTQGSTHSVVTLPIHLERMSMVAYRDQATTPQLHNLINRGDRSMLTEFFELCARNPEATVNLLYKDVPRKY
RWTEHKTWEPYKKYVASLGRLVHVSPQDPERFYLRLLLCNRRSPKSFADLRTVDGTEHPTYQQAALALGYLENDDEWIHC
LREAAEVKMPYQLRQLFGIILVYSMPGNAKDLWDRFKKDMSEDHARSIEKRDADRLNVREEEVRLRMAEYKALKNLADYL
VSNQKSLDMYGLPLLADYDDVSAQVDDPDSASVDVVQQEIDAYPQNELEHVAEQADHLNSNQRDIFDQVIAAVSRPVGGE
KLFFLDGPGGTGKSFLLEQILAHVRMQRKVAIAVASSGIAATLLTGGHTAHSTFRIPLKLTETSTCSLSWQSQKAELIRS
ASLIIWDEAPMMNRACFEAVDRSLRDIMKNELEPFGGKVMVFSGDHRQILPVLKDATRAETIQACFKSSPLWEHLRQVRL
TENMRVRTAPDAASAAELAEFSEFLLQIGEGRYPVNHEIGDGDICLPRDMCIIPERRVQQITSDEEDADMEPPPSFRLLP
PADEEHERDLDEVEEDRRVRNVNALIDAVYPGVDTENLPDEYFVERAILAPTNASVRRINDMVAERLSGETKEYLSVDSL
EGVADANMFEQEFLNSLNFSGIPPHRIVLKVGTPIIMIRNLNGDAGLCNGTRLRVVSLRERSIEASIMSGPFKGKKVFIP
RIVFYSEDDDKEFPFKLKRKQFPVVPAFAMTINKAQGQSIHHVGIYLESPVFAHGQLYVALSRVTSRKAIKIAVDPEAIG
EDGNVHTNNIVYREIFGTRTW
>gi|17536913|ref|NP_494143.1| (helitron ORF) Y16E11A.2 [Caenorhabditis elegans]
MDNELTSRPDSIMDTEPTTLPDSAMDTKPTNLPDFPSTSQEPVSRRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMD
WERKKEKRASMSEEEKAEMKYKKRVWMKKKRNEVAKTHDTSSVANPNYLGSMRCVCKNCNARFFQGEVSSSNDHINMCCY
FGLTTTLQDRFSNYPDELRHLLLDDSSHARNFQKNIRQFNSSFAMASMGAQLDVPRGRGPYCFKIHGQVYHFAGPLHPDP
GQRPAFGQIYILDTDQATDERLGNPANADCDPAVMAELSSLLLRTNPYAQAYKMMAEVEEKENSEAAKEGRHPGCVRLIF
DISTTKDPRRYNLPQANEVAVVFVGEDDDVPTTRSLAVHPRGGGLKTIRDIDRICDPLTYPVLFPNGTDGWHPDLEKRPS
EKKQGRITQKMYYSYLLMERSGVFNPLHHGRALFQQFAVDSWVKIEQNRLNYHRTHQVDLKAANYNAVQDYIAGDTDVPG
RRIVLPSSFPGSPRAMVQNFQDAMAIVSKFGKPDIFLTFTCNPAWTEISENLGPRQSASDRPDLIARVFKLKVDALFDDL
LNRDILGHVAAYISVFERQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPCGAQNPH
SPCMVDGHCSKRYPKDFHPSTTLNVDGYPGYRRRDDGRYVEYGTQHLDNRRVVPYNKWLLLRYNAHMNVEICGFIEAVKY
LFKYVYKGHDRAALNIIQNVRGDGNVVDEIREHLDARYVCAPEAIHHILGFKLEKKASVTTQQLESSSQTDTTLTAWFKI
NQKSKDIAESGNIPSTFVDSRQFFYMDMPTHFTFVKKDGWKVRGRGTRQIGRMYTVPPYETERYALRILLLNIKGAMSFE
DLRTVLDENNVPVVYATYVEAAKAQGLLNDDSEYLKSLKEWAGCSVPAALRSMFVAIILFNEVHDLNALWDAVKWDLSED
FRHAGAGKEEAEALAYFDIESRLQRVGKRFDVTKPSINPPPIDLDTVNPAQCASEGNRLLATLNDQQKRAADQILAALDD
ASLPRLFYLDGPGRSGKTYLYITLYNICVGRGLKVACTAWTGIAANLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQE
LAENDVFIWDEASMVPKTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLWTEFQIL
HLISNMRVTSGDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVIDPTTSDPCDNVILTPKNVDVAQLND
DVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLA
SHSLGCRFATGERKGHFTIIPRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALS
RVRTKEGLIVKSSSNIVTNIVFNEVL
>ZMCopia2#LTR/Copia 23-3901 [Zea mays]
MASSSDVIKPEAFDGASFKRWQIKTRMWLTDLKLFWVVTSAVPQAASDDSDDAAKAAALAEKAKWDEANEACLSRLLNVL
SNRLFDVYSGFTSAKGLWTELENEFSEVDNGNESFTTENYLNYKMVEGRSVMEQLQEIQLLVRDLIQYGCVVPDSFQVNA
ILAKLPPSWRDFVTSRRHMKKQMTLTELSAAINVEERARSSNKPSQQLQAHVVEKGGDRKFQKKKKNSPQKNLNQPKSKK
MKKKKEDFICYVCGVSGHTARRCKLRKGKGPPPQRKEGNVVVNSTPGYALQAFMASPSDDWWMDSGATVHICADRSMFSS
FQGYNSAPVLMGNGVPAAVRGTGQVYLKLTSGKTLVLKDVLYVPSMSRNLISVSLLCRQGLKLVFESNKVVLSKFGTFVG
KSYESGGLFRLSVLNNHSSYHVNVVCNNDSINNIWHSRLCHVNFESIKRLSDMSLIPEYKHVKGVKCGICVQAKQPRKPF
HTVEGRSTTPLELIHSDICEMNGIITKGGKRYFLTLIDDATRFCYIYLLRTKDEALEHFKIYKTEVENQLDKKIKRLRSD
RGGEYLSNLFDEYCKECGIIHETTAPYSPQSNGVAERKNRTVCDLANALLQSSGMPDIWWGEAVLTVCYVLNRVPPRNRE
ATPYEGFKGRKPDLSHLRTWGCLAKVNVPLPKKRKLGPKTVDCVFLGYAHNSAAYRFLVVHSETSEIAVNVIMESRDVTF
FESIFPMRDKEVVAPDGPSRTYSLPSSVHDQTPDLELRRSKRQRTEKSLGDDYIIYLVDEEPCSLTEAYTSPDAEYWREA
VRSEMDSIISNGTWEITDLPAGCKPVGCKWIFRRKRRPDGTIEKYKARLVAKGFTQKKEEDYFDTYSPVARLPTICVLLA
LAAAYKLLVHQMDVKTAFLNGELEEEIYMQQPEGFVVKGQESKVCRLIKSLYGLKQAPRQWHEKFNNTLTTAGFCVNEAD
KCVYYRFSGGKGVIMCLYVDDILIFGTDLEAIMETKIFLSKNFDMKDLGEADVILNIKLIKGEDGITLSQSHYVEKVLTR
FGHMDCKPVTTPYDPSYTLSKYEGEPVNQLLYSQIIGSLMYLSSATRPDISYAVCRLARYSASPGDRHWVALYRVLRYLK
GAMNLGIKYTGFPSVLEGFSDANWISDSDQMKSTSGYVFTLAGGAVSWRSSKQSVSTRSTKEAELVALDSASLEAEWLRD
LLSDLPMLAKPIPAVLVYCDNTSVLLKVNSRKDNKKSSRHIRRRLDSCRHARETGVITVDYIKSERNLADPFTKGLAQKP
IQAACMGMELVPC
>TOPSCOTCH_LP#LTR/Copia 101-4614 via tfasty with ATCopia22, 3 frameshifts and 10 stopcodons. [Solanum pimpinellifolium]
MVSEVIASSSSSVSANTLEGIEKNRNHPLYLHPSDTPGSVLTSIQLTGTENYLLxSRSLMINLRAKSKLGFVLGSCRKSD
YKPELGEQWEKCNAFVLAWIMNTVSKELLSGIVYALDTAVVWEDLNERFNKVDGSRSYQLHREICTLHQGNLTVSAYFTK
LRLLCDEFDALVPPPTCDCDKxKMYIDHLQFLRLFAFLMGLNESYSHARSQILMMNPLPNVNKAYAMITSDESQRMTAVN
RVSGDIHESMALYSKRLMILxCNTIKERMLVVVMILWQCMLDEVAMENTGNSSNFKQKKNWHLVCDYCKLHGHTKDICFR
LIGYPPDWKFKKKFGPGQDVQNAGKANHAYVDSQVRDEFESVKGLNNNSGSLEQATKVGKKGHESQLTTQPTFTPNQYNK
ILQMISKEDSQEYMANTAGTYKPLSVSNTNVERKDNADWIIDSGATRHMTSKETKLDYSVSVKDLDKQVHLPNGQATSVI
QIGSCKVSSGDTLTNVLVVPGFKYDLLSVSQLTRQLNCSVNFFPEFCVFQDLSNGKVKGIGKERNVLYYLPSQIPKRDAH
DEQNTLISSMVFNSEGLKWHNRLGHPSMKVLKSLSLIKRGEDINECNNCPVCPLAKQTRHPFPLSISKTFVIFDLLHLDV
WGPYKSPTHVGYRYFLTIVDDYSRMTWLILMKFKSDVFQILQCFFVMVQTQFNKTVKKIRSNNGLNFQxxMxSIVxKIGV
NHESICPHTPQQNGVVERKHRHILEVARALRFQGSLPIRFWGECVLAAIYLINRMPTSVLNGQSPFEMFHGMQPDLSHLR
TIGCLCYATKLVKDDKFSTRADACVFMGYSSTKKGYVVYSLNHQKMLVSRDVVFKEDVFPFATKKMDKDVPLFNHQHITT
YSQSVEDVITVQEPAVNNDTLEFTETNNPNNSEDVELEDNMVPKIPVVAPISTRHSERSSNPPVWLKDYVTNVSDHPYSI
SKYVIYDHLSTGYQSFLGQFSEEVEPRTYEEAVKNPRWVEAMEQEIKALEDNGTWQIMKLPDRQSVIGCKWVFKIKYKAD
GMVDRYKARLVAKGYNxIEGIDYQETFAPVVKMVTVRAIIALASIEVWPIFQMDVFNAFLQGDLYEEVYMELPKGFKGAE
QNCVCKLVKSLYGLKQASRQWNAKLTKALCKSxYTQSFLDYSLFTKRSDTGMVIVLVYVDDLLITGSDPVLVKATKQVLH
NHFKMKDLGELKYFLGIKFCRSESGIVMNQRKYALELISEAGLAGAQPVFTPLECNIKLTSVAYNTSSDDPIFLDISRYQ
RMIGKLLYLSNTRPDIAFAVQNLSQFMQQPKHSHWNAALRVIKxIKGSPGLGLLMSSHKDTKLTGFCDADWAACLNTRRS
VTGYLLKFGDSLISWKSKKQNTVSRSSAEAEYRSLATLTAEVVWVTSLFKELCVKLESSTIIHCDSKAALQIAANPVFHE
RTKHIEIDCHFIREKILQGLIRTNYIISKKQQADVLTKALGRTQHDFLLSKLGLLNIFNTSSLRG
>STLV-2_pol#LTR/Delta gi|9629499|ref|NP_056907.1| gag-pro-pol polyprotein (gag clipped) [Simian T-lymphotropic virus 2]
MLPVIPLEQQHQPLLDVQVSIAGAPPRPTQALLDTGADLTVLPQALAPESVSVSDTTVLGAGGQTSSQFKLLQSPLCVYL
PFRRAPVTLPSCLVDTNSKWAIIGRDILQKCQSVLYLPEDNLCKGTPRLPDGITPPRLLPVTTPNVIGLEHFPPPPQIDQ
FPFKPERLQALTDLVSKALEASYIEPYSGPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLASPSPGPPDLTSLSTALPY
LQTIDLTDAFFQIPLPKQFQPYFAFTIPQPCNYGPGARYAWTVLPQGFKNSPTLFEQQLAAVLSPIRKTFPMSTIIQYMD
DILLASPTQEELQQLSKMTLQALVTHGLPVSQEKTQQTPGQIRFLGQVISPNHITYETTPTIPIKSQWTLTELQTVLGEI
QWVSKGTPILRKHLQCLYSALRGYQDPRAHLLLQKQQLHALHAIQQALQHNCRSRLNPALPILGLISLSSSGTTSVLFQA
RQRWPLVWLHTPHPPTSLCPWGHLLACTILTLDKYSLQHYGQLCQSFHHNMSNTALHDFVKNSPHPSVGILIHHMGRFHN
LGSQPSGPWRTLLHLPALLQEPRLLRPLFTLSPVVLTTAPCLFSDGSSQKAAYVLWDQTILHHDSVTLPPHGSNSAQKGE
LLALLSGIRAAKSWPSLNIFLDSKYLIKYLHSLAIGAFLGTSTHQSLYAHLPTLLHNKVIYLHHIRSHTNLPDPISTLNE
YTDSLIIAPLIPLTPQDLHKLTHCNSRALVSSGATPQQAKSLLQTCYTCNIINSQHHMPQGHIRRGLMPNHIWQGDVTHY
KYKRNRYCLHVWVDTFSNAVSITCKTKETSSETVSALLHAITILGKPLSINTDNGSAFLSQEFQAFCASWHIKHSTHVPY
NSTSSGLVERTNGIVKALLNKYLLDSPNLPLDNAISKALWTLNQLNVMSSQWKTRWQLHHGPRLRPIPETPRPSRAPTNW
YYYKLPGLTNQRWKGPLQSLQEAAGAALLSIDGSPQWIPWRLLKKTVCPRPDGSELVAHAATDHQHHG
>DIRS1_DR_gag#LTR/DIRS 414-1853 From Goodwin & Poulter. Corresponds closest to DIRS10_DR in RepBase, but both DIRS1_DR and DIRS10_DR consensi contain many stops and shifts. [Danio]
MALRLCVSGCGGFLSPDDGHDHCIACLGVQHVNAVLAGGSCRHCDAMTVAQLRSRLTFARERATPVASCSKKAAGARADL
RVSAGANPPPTGSRTSRSSRRSIQASGGESDPSNQMVALTLADTGDQMSSAASEGGLSLSDEDPDPLAPSGQVSAVKSDP
EADMLAVLSRAASAVGLEMVYPPAPRPDRLDGCYVEDQKAKPSKPLVPFFPEVHSRLTQSWRAPFSARAASASALTALDG
GAARGYEAIPSVERAIAVNLCPRGASTWRGLPRLPSKACRLSASLGARAYKAAGQAASALHAMATYQRYQAQALAELHEG
GSNPSLLHELRTATDYALRTTKSAACALGRTMSTLVVQERHLWLNLADMRDVDKVRFLDSPISQAGLFGDTVGEFTQEFK
AVKEQSDAMGNVIYRRGRKPAPPAEPSTSAVPRRGRPPTSAAPPPPAPPAKRARRSPRKQAAPPAQGAVKSGKRTAKRP
>ApDirs1_pol#LTR/DIRS urchin gi|51371921|tpg|DAA05243.1| TPA: Pol [Arbacia punctulata]
RKKLRVSQYPTHAGRLKFFVDKWSLITTDAWILNAISGYKIDFANTPCQYFLPPNLPLCAEEKKAITIEIQTLLEKKAIV
ECRRDNCKFISTIFPIRKKTGDLRPVINLKNLNVFVKYDHFKMENVSFVKDLVQRNDFLTSLDLKDAYFSVPIHPDHWGY
LSFFWEGKFYSFQCLPFGLSSAPRVFTKIMKPVIAAIRSRGIRIIIYLDDILILSHSRQESIEHTNYVFHLLSDLGFVIN
REKSFMTPTNSALFLGFQIDTQQMSFRLPTEKVRKIHSKGDKLLTAHLVTIRDFASFIGSIVSSFLAFPFGKMHFRPLEW
AKTKALNESNSNYNSSISLDASIRAEIEWWLRHQPENFTTPIHEPPVSITLSTDASSTGWGAVCHNDNSFSQGVWRPELK
SMHINALELLAIEQALFTLCSEIFGKHIHIQTDNSTSVAYINKMGGNMQKLNEIAFRIWFWCIEKRIWISASHVAGVANK
EADVLSRRDMNKELSLFPSVFSRVVASTFDPDIDLFASCNNKQLASYASWKHDPHAKVIDAFSVSWKCLTPYIFPPFCLI
CRILNKLLTDNTRTALLIAPIWQTQPWFPTLLQMTIAPPLLLPVDCLRPIVHPIPKMKLAAWTISADAGMQQVFREKLPV
SSPCPGAVELPNNTIQHGNSGLIGVVNKRLIHFRLL
>TKL1_pol#LTR/Copia 535-4614 (1 frameshift) [Kluyveromyces lactis]
MLQITKIAKKRYNTFHQSKLLRTLGLTPRTQNTKITRNPARDLMIDSGATISVVHDKSLLHNFNPSTDQQLFDTQENQIR
VEGEGNLILKFKKDKVKVRAIYTTDMSMNVISDAHLKNAGIFRDNRQPFLISRTGKRIAKLYELGSLCWIPYCHISKPHE
QTISAISIRDAPNRFSLANVHRWFGHINVKYIRESIRKGHIQGLKEDDVDWTGYSSFQCQQCLESKAKRNNHYVNSRMDY
TKEYYPFEYLHTDLFGPIRCRSSYPPQYFIAFTDEITRFRWTYPLYSKTAEEVVDKFKEIVMQLKSQFGTRVRTIQMDRG
SEFTNNMTRAYXKERGILIRYTTTADSKAHGLAERQHYTMLNDCRTHLQHANLPPKLWYHAIVFSNTVRNTFVNRHTGTS
PRNKASMAGLSFKDVLPFGQPVIAHIHDPQSKLDSRGILGYALHPSTESYGYIIYVPEENKIIDTRNYVILKHPPGEIVS
QDEIEQMIERIENEDAANMENVEFNEEPNYAGSAQPMPYNTDYIADNINENFETITQEMADFGLEYGGDTLSPVTPSDAG
DPFTPSDAGDSFTPSDAGDQFTPAPTDNNRRETTSSPEPIGENRDPISPPDSNQDGMNDNINESPEPYRANSTASSAQPE
EEHHASPTNLDFSPIIDGLDTNTNLQEEPQLPPQQPSTEQEQLPTAADSVPDTTNPNPSEDDDTINDKLKSIPIFNGNKY
KGPRTTTNSFEPSYGGGTYTENYNHPTLEEVFESIERDPFNLTSQKRPRSSNTYRESDQDSYDSGGDFDEEQEQECSSDN
SPARPPNKRIRRVNYVHAIEHTKGIMQMNTSINYSEAISRNRNENEKLAFQNAYKKEIAQLTKMHTWSEELIDATLIPKQ
RIINSMFIFTTKRDNSKKCRLVARGDQQSLETYDPDQKATTVHHLALMTVLAMALDHNLTAFQLDISSAYLYADLKEELY
IRAPPHMNARNKVLKLNKSLYGLKQSGANWCALIKQFLVEECGLIEDRFWKCVFTAKEPLKLVVCLFVDDMLVVGRNDEH
IIEFISKLSKRFDTKVVNDGNHREEDGVNEYDILGVELEYKKGEYMKFGMQKSLEDKLPHLGVPLYSHPRQRKVPGCPGD
YISSGEDLTLDDQDYKDKVKHLQRLVGLASYVGHKFRFEILYYVNILAQHQLYPSAKVLDRAAQLCQYLWDTRDKKLIWK
YSGPKNNEITAISDAAFAGNNDFKSQSGALYLWNGKTIAAKSSKIKLTCVSSTEAEIYSISNCVTYLRGIEILVDKLLNT
KSIIKLKTDSQPAMAIIKRKEDAEFLKKHTGSRAMRIRDECNELGLVLEYIPTKENTADILTKPLSMKLFKLLTEDWIQ
>RLG_scAle_5_1#LTR/Copia 93-4904 [Saccharum hybrid cultivar]
MATSSSSAMATAAKLRDEALSAAKRLEDEASSLRSTNTERSQQLEEEAALLKSAAAAQERVRVAAAALDKERAHADTLEQ
QAAALRDRLRTEHPDDDADPEDDDVHSASSEAAAIAHLHTQAAAVQNIKNLIPIVLDLQSSNYSKWRGYVLLILGRFALK
DHVLSDDSRPYDPVWSRMDCVVLSWLFNIISADLLDVIHEHDGLTARAAWLGIEQQFLNNRESRAMLLDAEFRTLCQGAL
SIDDYCRKMKGMADALADLGEPIQDRTLVLNVLRGLNERFQFMSQLVTRQRPFPSFADVRADLRLAELNMGTPSASPSAL
VAAPSIRPPTSSSPVPVPPRHHQATAGHQTAAGHHAAAGQQSSGNRGRRRRGGRGSGGSHSSTQGGTAPATPQWPSLLNP
WTGSIHMWPGSIAGSARGPPPRAVQPAPLQQALVAGVPPAYFAPPPASGSHYPQSPQAPLAWAPWTPEGLASAFSTVSLT
PPPNSSDWVIDSGASSHITANPGMVTATPFSSFPSSIVVGNGATLPVIGTGYSVLPGPFRLDNVLVAPDIIRNLLSVRKF
TTDNCVSVEFDPLGVSVKDLRTRNTLLRCNSAGPLYTLQLPSSSTGSCALVATPSPTTWHRRLGHPGKATLQSLAQSSSI
VCSKPEDDSLCHACQLGRHIRLPFSISLSRAAKNFDLIHCDLWTSPVVSVSGFKYYLVILDDCSHFLWTFPLRAKSDTFP
TISNFFAHVSTQFGCTIKSVQCDNGREFDNSASRAFFLAHGTTLRMSCPYTSQQNGKAERMIRTVNNVTRTLLFQASMPP
SYWVDALATATYLINRLPTKTLNMSTPFFALHGTLPSYHDLRAFGCTCYPNLSATTPHKLAPRSTLCAFLGYSPDHKGYR
CLDLNTNRVIISRHVVFDETTFPFSLSRPSPPQQELDFLTDDDTILVSPLPAGTPGAAAPSQSVPLAPSLARTGTPASRA
PVLPAPSTPAPSAVSRGSLASSVQAPAPPVVHIYSRRALPPVIAPQKPPIIHVYSRRAPAPAPPPERPAGAPPRRSSMVP
SPPRYVKSDPPVPAGAVSIPPVANSHGMATRGKIGYRQPRLALHTEALSPLPRSCRDALADPHWRQAMEDEYAALQDNHT
WDLVPRPAKANVVTGKWIFKHKFHADGSLERYKARWVLRGFTQRPGVDYDETFSPVVKPATVRTVITVAHSRDWPIHQLD
VKNAFLHGTLSETVYCSQPTGFADPALPDHVCRLNKSLYGLKQAPRAWYSRFASFLISLGFIEAKSDTSLFIFSRGTETV
YLLLYVDDIVLTASSQQLLHRVIAALKKEFAMKDLGPLHHFLGVAVQRHRDSILLSQRQYILDILARHGMSDCKPCSTPV
DTCAKVPADAGPSVADPTAYRSLVGALQYLTFTRPDIAYAVQQVCLHMHDPRETHLVAAKRILRYLQGTLSHGLIIPRTA
PTQLRVYTDADWAGCPDTRRSTSGYAVFLGGSLVSWSSKRQPTVSRSSAEAEYRAVANGVAEATWLRQLLQELHHPLDSA
CLIYCDNVSACYLSTNPVQHQRTKHVEIDLHFVRERVAMGAVRVLHVPTTSQFADVFTKGLPSSVFMDFRSSLNVRSTDD
LTAG
>PREM2_ZM_gag#LTR/Copia 49-2742 [Zea mays]
MSGDHAKKEMETGEKPTTSHGSTSSEESRTKRREKKKSSSNKGKEKKSSSHHKEKKEKSSSHKPHRSGDKQKRMRKVVYY
ETDTSSTSTSDSDAPSVTSKRQERKKFSKIPLHYPRISKHTPLLSVPLGKPPTFDGEDYARWSDLMRFHLTSLHKSIWDV
VEFGAQVPSVGDEDYDEDEVAQIEHFNSQATTILLASLSREEYNKVQGLKSAKEIWDVLKTAHEGDELTKITKRETIEGE
LGRFRLRKGEEPQHMYNRLKTLVNQVRNLGSVKWDDHEVVKVILRSLIFLNPTQVQLIRGNPRYTKMTPEEVIGNFVSFE
CMIEGSRKINELDDPSTSEAQPVAFKATEEKKEESTPSRQPIDASKLDNEEMALVIKSFRQILKQRRGKDYKSRSKKVCY
KCGKPGHFIAKCPISSDSDRGDDKKGKRREKKRYYKKKGGDAHVCREWDSDESSSDSSDDEDAANIAVTKGLLFPNVGHK
CLMAKDGKRKKVKSNSSTKYESSSDDNASDEEDNLRTLFANLNMEQKEKLNELISAIHEKDDLLDSQEDFLIKENKKHVK
VKNAYALEIEKCQKLSSELSTCHEMIDNLRNENASLNAKVDSHVCNVSIPNPRDNNDDLLARIEELNISLASLRLENENL
IAKAKDFDVCKITISDLRDKNDILHAKIVELNSCKPSTSTIEHVTICTRCRDVDINAIHDHMALIKQQNDHIAKLDAKIA
EHNLENEKFKFARSMLYNGRRPGIKDGIGFQRGDNVKLNAPPKKLSNFVKGKAPMPQDNEGYILYPAGYPESKIRKIHSR
KSHSGPNHAFMYKGETSSSRQPTRAKLPRKKTPNASNDHNISFKTFDASYVLTNKSGKVVAKYVGGKHKGSKTCVWVPKV
LVSNAKGPKTIWVPKVKN
>RLG_scMaximus_1_7_gag#LTR/Copia 796-2376  [Saccharum hybrid cultivar]
MVRKTTKMLKKLNKSGIKFDGKKKKFFTSSKRKPISKMDCFNCGELGHLAHQCVKPPKDKYKNKYKGKKDDSSDEEDDKR
KNKPYKKKDGKKREFYKKKKGGKAYIVGDWLTDIESSCESFGDESDNEKDKIAAFVIGPSSSSPTSSSPPSPSPSATHLC
LMAKGDRKVQNSDSDDDDSDSDDEYDAPSYDELVKLLNKYSKIIRRTRNENDELQHENESLSSKLESAHETRDELIDQNE
TISSSLKELKTSNKELRDKHDKIEKKHGELITRLNLLKDEYTALKINYDTLIVANELALETHDATNQIVKIDIATSCDDL
IVENFEQGSSGKGKSVVEANDYDEYVKLKSENEMLKVENKKLLALEKQASNESLIEENKKLKQEKEHLKTGLSKFTRGQH
LQSELLMNTVMKLDRSGIGYLANQEKKVKAKQQQSKTKPKLKRCVECGQEGHFAHECKTPPPQPLPKHARLFAFNAHYML
RKDSSGKMKVMFLGPPNKNRPKKIWVSKSLVEKVKGPSQVWVPKQKA
>SZ-57#LTR/Copia 72-3346 via tfasty with OSCopia2, 2 frameshifts and a ca 600 AA deletion around pos 575. [Oryza sativa]
MXTTSSSAHDDLINTIVNAVADAVRANYQAPPGLQIDPTTVQTVAESAATKASSAVRDALVKHLPPPAEEAQSPTSMPPA
IPPISTTPSGPLPPELMALFARLAILASSATGASIAPSSSGAAPPPPLDAETRTTLHAQAVAVLNVKALVPVTLDLVAGN
YARCHSRxxDDFSHYVWTFPLRFKSDTFATLSRFFAFVKTQFAASIRNIQCENGREFDNSTARTFFLTNGVSLRMSCPHT
SPQNGKAERMLRSLNNIVRSLLFQASLPPSFWVEALHTATHLINRHPTKTLHHHTPFFALYGAHPSYTHLRVFGCKCYPN
LSATTPHKLAPRSIMCVFLGYPENHKGYRCFDPVSNRVYISHHVVFDEHSFPFAEMTNSADAPNLDFLEDFSSPLPAPIG
RRIGSSSSRPAGTPPGPRASVGTPSGSARQASPASSPARPTEAGPSSAGPGAWDPMLSPRSTHSAAPSNTGSSNEPPLST
GLAPTTGASSLRPPPTGAPTRPRSARVPGGRAPPPILDASPADNEHAMVTRGKSGIRRPIDRLNLHAAPLSPVPRTYRAA
LADPHWCTAMEEEYNALLANRMWDLVPRPPGVNVVTGKWIFRHKFQADGSLDRYKARWVLCGFTQRPGIDFDETFSPVVK
PAXXXXXXXXXXXXXXXXXPVVKPATVRIVLSLAVSKDWPIHQLDVKNAFLHGTLQETVYCSQPAGFIDPTKPDMICRLN
KSLYGLKQAPRAWYSRFASFLLTLGFSEARSDTSLFIYHRGSDVVYLLLYVDDIVLTASSDSLLRWTISALQAEFSMKDL
RPLHHFLGISVTRTSTGLFLSQQQYILDVLARAGMSECKPCSTPVDTNAKLSAVDGAPVADLTDYRSLAGALQYLTFTRP
DISYAVQQICLHMHDPREPHLAALKRILRYTQGTIDHGLHFQRSRTVDLVAYSDADWAGCPDTRKSTSGYAVFLGANLIS
WSSKRQATNTVSRSSAEAEYRAVANAVAETCWLRQLLHELHTPPSKAMVVYCDNVSAVYLSTNPVQHQRTKHIEIDLHFV
RDRVAAGVVRVLHVPTTSQYADIFTKGLPTSVFTEFRSSLNVRSSAVATAGGGG
>SZ-30_gag#LTR/Copia 58-2515 via tfasty with Copia1_OS, 1 frameshift and 1 stopcodon. [Oryza sativa]
MAAPVRFSTKPHVFDGTDFSHWCSRMQSYIMAEDYDIxRKVSHAYVIPEAINTAAEKTAFEQNCKARNILLSGISRSDYD
RVAHLQTAHEIWIFLSNFHQGTNNIKELRRDLFKTEYIKFEMKPGEALDDYISRFNKILSDLRSVDSSYDANYPQSKIFR
HFLNGLDMSIWEMKVTSIQESVNMSTLTLDSLYTKLKTHEMNIRSRKGDSKSSVLVSSSTFLDVGASSSKSSVLALFNAI
SDDQLEQFEDDLVLLSNRFSRAMKNVRNRKRGEPNRCFECGALNHLRSHCPKLGRGKNEDDGRVKEDDVNKKKNMKEKEK
KKHCMQWLVQELIKVLDGSEDEDEGKGKQVVDLDFIARNASSAVDESDDDNEEKLSYDQLELAAYKFAKKLQTCSIVLDE
KDHTIEILNAEIDRLKSSIPDDDNCQSCEVLFSEINALRDVNSVNCKKLEFEIEKSKKLESSFALGFALHARVVDELILT
KNVLKKYKVVFYASSLVNASCANKAKQNNGVLISQDCSKCVLNEMKLKDAIGRVKHMEEVVKQDEVFSCSTCRKQKGFLD
ACKNCAILTQEVSYLKSSLQRFSDGKKNLNMILDQSKVSTHNRGLGFDSYAYHARHPPTVLGAARRGEILIETEPKNTVF
KSAGIMSSLNASSSKSNVVNAKSSVVAKPSISKPSTYQTCREKYTCSFCGKDGYLVGFCFRLAHKQKKEREIAFAKRRWQ
KSGFSSRSTVRPQLNRRSDRQLGPVRPQGQRRSDRPRGDFVRNSNQSFVKRKGKFSGMSGSDFVSAYVPTGSTGRVTQCW
IPKFLISNPNTEALTSSHL
>DIRS1_pol#LTR/DIRS 1622-3445 Dyctiostelium gi|903714|gb|AAA70202.1| [Dictyostelium discoideum]
MLNPIPISIPEGPKSDCITKEVQDLLLDDAIEQVLPNRYSKRVFYSNVFTVPKPGTNLHRPVLDLKRLNTYINNQSFKME
GIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIFTMLLRPVLRMLRDINVSV
IAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKSVLEPTQSITFLGLQIDSVSMKLLVPKEKKKSVIKEIRNFL
KLDCCSPRKLAGLKGKLIALKDAVIPFRLYTRRTNKFHSQCLTIAKGDWDQSFPIPQEVKSEISHWLTVLNQWNGKEISL
FPSYDYVLTTDASESGAGATLKKGNKVIKTWSFQWSTTQSNMSSNRREMLALLMAYQALCRKLNNCKLKIQTDNTTTLSY
INRQGGQIQDLSVLFEQLWKQCLKKKVNLIGEHIPGFFNVKADHLSRLSEMNHKSSTRVIKSYNWQLKKEVFNRIQLQFG
QIQMDLFASHLNHQTNNYSTIRMNALHLDWSQWKQCLAFPPPILLPSILEKMNSSSSKKVSIILIFPIWRSATWYPMIQA
QVPRHHRHMFPQVLGTFQEVLTKQSVESIPIQIQQRWKLGIIQLSNLM
>DIRS-11_ACar#LTR/DIRS 4305-5306 [Anolis carolinensis]
AVLDILAAAHRPSTQRSYAYKWGKFAEFVKQRGADPLAAPIPLLLDFLASLAQRGMALSSVKCYLAAISAYRKRRGLTSC
FQDPMVQIFLQGYKNTYPPSALPPPAWQLRLVLSALTKPPFEPLATVDLAHLSWKTAFLVAITTARRASELCALRVDDPY
MRFHKDKVVMRTDIAFLPKVVTLFHSAQDIVLPAFFQEPATPLEQALHLLDVRRALAFYVERTKEFRKSPCLFLKYRADA
RGTPVSPQRLSAWVIATIKLAYQLAGQEPPSGLRGHSTRAVAASTAFGRGVPLEEICRAATWSTPLTFVSHYKVDLLSKR
QASFGRAVLFSAVA
>DIRS-6_NV#LTR/DIRS 1341-3473 [Nematostella vectensis]
GKPEPRLVETIQQEIPSVKSGNQPRQQVNNVSSTSHSISPVGNVANRVDQWSKITSDKWVLETIQGYHLEFERTPWQKFI
PGRFNLSESEILLINAEVVKLLEKRAVVQVNHREDEFLSSIFLVPKKTGDLRPVINLKPLNEFVQNIHFKMENIDLLEHL
LLPGEFMASIDLKDAYFSIPICVQDRKYLRFCWHDKVYEFTCLPFGYKLAPRVFTKVLKPVYASLRFRHIRVIYYIDDTL
VIGKSSEECAQHARDVCQTLSNLGFTVNEAKSQLVPMQQINFLGFAVDSVSMTLSLPTQKIDTIINACRGLLENPSPSIR
DVAHVTGLIVSAFRAVKYLRLFYRSVELCKSHLISNGCNYDDKTILSETARSDLLWIIHNIQRYNGLSIVTSNVDFTTES
DASMLGWGACCNGQSTGGLWSEVESGNHINYLETLGAFFALKCFARDVTCKHIQLKLDNTTAVSYVNKMGGIRSCNLDNL
AREIWLWCIDRHIWISAVHLPGQSNTIADYKSRNFNINLEWSLHPTVFDWLSQTTFMPDIDLFASRLNTKVPRFISWLPD
PCAFACDAFSLDWSNFKPYAFPPFSLIPRVLTHLRAHLVQTLLLVTPVWPSQAWYPVVLRMSTERPILIPKWPNLLKLPH
TDQLHPLRDQLQLAAWTLSGHVSLAEDFLLAQPRLSASHGQRGQANNTMVPGLNGRAGVVNGHMILFRHL
>DIRS-11_ACar_gag#LTR/DIRS 246-2297 (Probably meant to be named DIRS-1_ACar) [Anolis carolinensis]
MALRFKKCSGCGGNLPDSDGHEKCLLCLGETHSTKTCGVCRAFTPQARKNREARLKALLYERALFPAQPEKRLLPSASQP
ASQPCQPLTSPTASSSKRPRSPSPQRPRSPQASGEERGRKKKKRRRDAESSASATMRPAPEGGTSGSSQAPPTAAQRPRE
AGWATPGTSGLQAGAAPLPEAEAGPRDGTQAAEPGXRIQRHSAAAAGPEAWGEQQLSPFRKGPGAAHVACRPSPPPSLFH
SRSPSQAGLPRSVSSPGRRAGSGSLVTWHGDSLYRGYSGREDFVHRSPGGRAYVFGPVLVPEDHTAQPPVPSLQGDSTPR
QAPRAEASMDAQALDYVSASGSHTSYSLREQDEGAQVETPVTADAASLAALLSRLTKALKVPVAPPQKPVEDFLFPSEQQ
QQAPLPATVLPAIPYILQLTKTPEVAPPSVAPVSRRNELLYKVDLTSAPWIAKPPQPNTIVADMTRGRGSRSQTSPADKE
GKKLEGLGRKVHAGAAFVTRLAHYGAYMSAYQEYLWKRMGTYVASLPQEHQAYASAIHQEALLLSRAQKDMAKHTADTAG
RMFATSTSIRRHAWLRASTLSEEGRALAENLPAHDTGLFNPETDEKLKHKQEVRQAANRYGYTTQRYQGRGRWPPSSTYT
RRPYNVGARPFPQAPSPQTARQPPQSRLRQQGRGRFQSQSRRRV
>Kangaroo-1_VC_pol#LTR/DIRS i|22415757|gb|AAM94957.1| reverse transcriptase [Volvox carteri]
MLTRSTESTQGTSRDDDRTPDVGYPADTQDGDGRDPTELVSLEDDPCEDDQWVSDQPTGRKPRGGGLAPAREGSAHNAAG
REALQLLQEAWQRLQRLGQQDAVDPRDEQEFLEEVVRLLPDPEDFQPGRIRLHVAVWRAFFQAANEGRPLTDKQKQWLEY
LRGGIQLEWVACDYPGQELAPERGRKLAIVREMLRVAAPDCDLDFMMAGDRPRAVQFPNHRSATQHHEFVTAELRKALDR
GVIREWPADAPSPTVVNGLRVVEKDGKLRLCINPMYINCFLRYRPVKYERLAEVPSYLLPEDWLYTTDDKSGYWQLSLHE
REHTYLAMRWRGQTLFWPHLPFGLAPACHLYTSMKLEVFRPLRQLGVRMSFLIDDQMGAAGSKAAAQFQCGAVVRLLAAL
GFTLSLSKCQLIPRRRVRFLGMEVDAEAQAFRVPDDKLARFRALLTQLEGERLTARQVAQVAGKIIAMTPAVTTAPLYAR
MVWRVARDVAWDEEVWDSAEVLRQAGLFMELLGRRNGTATWRKGPALRLTTELVGDASDRAFAAFLPGEELGANSRMLVP
FKAQETQRLQRNDFSSTERELRALLYSLHWLREQAPNLLYGRTVQYQTDSQPAEFCMVGMKGNAACLPIVAEIHRLCADT
DTDISVVWYPRSREQQQQADALSKYEDGSQWMLNPTVYAKLWEHPCVHGRSPSLDVFADAHTTKVPGSFFAANWCPGVKG
VDAFAQDWGSPGWGRRDGGETVRPLLYINPPFSAVARVLRKVAEERPDCVLILPVWPRAWVAILRTLPIRAQMTLAHREL
FIPGPQVPNAAKRGPMTPRYRVQAVYVLW
>Kangaroo-1_VC_gag#LTR/DIRS gi|22415758|gb|AAM94958.1| gag protein [Volvox carteri]
MEGWMQLLREELQEEGEGEQQQQLGEGPNVGPRGKQPNNAGAATMHQVAAAGPVGQPAFYSVVTEKDVQEAHSRRKEALR
AARKALNLEEADRVPNAQLWATVMAQAGAMTEGPCGLRVVKSAVSAMLEQAEEAVVDALANVGPGLVTELRACFSNAIEP
HRRGVLKFIGQQAKQASKERFVGQVTGHLVQWGWVETSLATLKMRARDARLHWLEAALQAVNVSTPTFLEMKQRAWPAVI
LLMRAAQRIHDGHDRMAENILKHGGGDGGDRKLLWGPGAAGEGRPPGAPGRPEQRTAGWGQVGGGFQAPPRDAGLGAPHA
GGRGVQRLGPPASVVAAVNQELDRRGFQGVGSGSISEIAYRGNVDGSKLCITHAWNGRCARAQTGQPCRFKHPATEAEQV
TQLVDALVSRNEAMRKV
>DIRS-2_SP_yr#LTR/DIRS 3458-3995 [Strongylocentrotus purpuratus]
SSLLQAWSCCYRQQGLSAKTVDIISASWKDSTKRQYKVYIKKWESFCKQRNLNKLKTKAENVLEFLSDLFYNGNAGYSVI
NTARSALASFLTLENDSHTVGSHTTISRFMRGVFHLRPPVSRYTKTWDVGIVLNYLRELYPATKLPLKDLTHKLVMLLAL
TSAQRVQTLYHMNLDKMNL
>DIRS-1_NV_gag#LTR/DIRS 971-1615 [Nematostella vectensis]
MPEETLQRKMNKYHRPGNCEKLTKVKVNQAVWDNLSTGVRSQDVKLQKVQTSLVKGMCALSRALSKVLDKLSLIPSGNDI
FREASDAFALIANANMELNQRRKELIKPDLNNEYRHLCSSSSNVTITDQLFGDDLAKEVKELTEVNRVGKRVTTTNPTAY
PRSRDNRNLGAGSYGSRGRMFRTRKSFLDSRNYGNQQPYNTNQTRKFNKQKRGK
>DIRS-1_CTe_yr#LTR/DIRS 3402-4361 [Capitella teleta]
IQSAGLTPELAAFITDSIRSSSRQTYESAWRSWTQWSETSGMDRSDLSEISLVRYLWYLFQNRDLAASTLGVHRAAISSL
SNPLDNSLSNSFLLQRFMRAVFLTRPPARRRPREAWDVATLLDFLRTWGPLESLSFRQLSHRTFALVLVFSCRRISDLCL
LDSEEPWCVVTDRSVVFQPRFGLKQDRPGHRSPPIRFSLSPHAELCPVRHLAAYLEATASRRSSSVLFVTTTPPHGTAAR
ATLRQWFAQTLMGAGITASPGSVRSTVASTALARGLSDNVIMQSADWSSSQTLYSNYVRVLPAEALRRDTVQSTIDLLPD
>DIRS-1_NVi_yr#LTR/DIRS 3465-4463 [Nasonia vitripennis]
IADTSSSRSPAFNCVQSIRQLFAKRDIPIDALDIVMSSLSESTIKQYGSALKLWHKFCHKKNIEFYNTEPKFVLSFLTDR
FNAGASYGTLNSCRSAISLIAKDKVGEHTSITRFMKGVFKLRPSKPKYDTTWDISIVLDYLENLDVSNLENLTYKTIVLL
ALSTAQRAQTLCKIKISNIKIFENKLEIIIPEILKTSGPGRYQPCLKLPIFSNKPKLCVASTIKLYIEKTASLRRNHNQL
FIAIKKPHNEITTQTISRWIKKCLKNSGIDTSVFTAHSTRHASTSAALLKGIDLDTIRRTAGWSNQSKVFANFYNRPIVT
NTCEFARSVLQEQ
>DIRS-2_BF_yr#LTR/DIRS 3754-4719 [Branchiostoma floridae]
RLASVRQALISAGLSHDAAAISCAAQRKSTQKQYQAVWKRFSNWCKAKALDPFKATVPEVVEYLKCLYQEGLSYKTLNVH
RSAISSTRLISDGCQIGQHWMVNMFMRGVFNMRPPRPRYLVTWDVGTVLKFLQTWEPLHSLSLKQLTQKTLSLMALASAD
RCGTLASLSPDLMSISNAKVVFVPMELTKSDRPARPYREITFQSYPGHSEICVVRHIREYLRRTQSPDRPNKFFLSYKTQ
KPVVSATLARWLKDVMHLSGIDTSVFKAHSHRSAAASAAVRRGLSLKDLLKLADWASARTFQTFYFRPEVESDLGRALLS
QL
>DIRS-2_AMa_gag#LTR/DIRS 319-1797 No matches yet. [Allomyces macrogynus]
MPCRRTNLTAPANAGGNGHGDPSIDPPTPTATVGPVMAPGDAGDAGSPAVNADAQRAPVADAQLGPLEITALAHWVQELD
CKVCYLGNACHRDKYLLKEQGAIINGQSARIAAYEADKHDQHDWGHSLPHHGDCCGRSPELCSPTRCCSCYGFLPVLCLC
SHLHCSLCDHNSSHSGCDSSPGRGSGCLHNVFDDNEGECTNGYDPRTDPELSTFQPDVLDVLPTGPLELPSLLDHFFHIS
GKWSWMQKDSLGAQLKPFDEVPPIEGFPMHACYVLWQTISEKLKSCLVDMAANPLGALSTQTLGALMSNVTAFAVLDKAY
DAVVASKADKALEFIAQARRAMLTGALMNQRAAHQATIERQRQAVVDSKTVTVPAKEFDELLHSGAVVPHVVEDDDGASS
WALVDEDRLRSRLADIGRQVYPTSSSGLQSASKPRSDHGRGLGGWSTATCGSSSMHGATGRKGGWSGARKRKHRNRDASA
SPEPKGKGKKPRA
>Copia-95_SB#LTR/Copia 74-3953 via tfasty with Copia-50_ZM, 2 frameshifts. [Sorghum bicolor]
MDVNPLFEFGQFSHGGSPSSSSSSAASFTAPVNPNGPSASVPPPPPPQHAPTSLQTVNIKSHVPTILDMVNPNYPEWRCF
FDSVVGKFGLHSHLAAAPTAADRADPDWVMIDQCLVNWMYNTISRDVLRIVRVPGATAFTIWAAIVDLFRDHQMHRAVYL
EAEYRSLYQGDLNITDYTAKLKELSDALRDLGHTVSEPLASAGVPPAGNGTSDWFLDTGASSHMASAPGNFPTVQPLNSS
PSVTVGNGASMPVTHLAGSSIPTSTSPLALHNILVTPSLIKNLISVRALTRDNDVSVEFDPYGFSIKDLHTRQVKLRCDS
QGDLYPLQPPAPQAFHATAISVDLWHQRLGHPGRDQLTAALRSFPFNCTKSAAHTCPACQLGKHVRLPFSSSSSVSYFPF
QLLHSDVWTSPVPSISGNKFYLVIIDDYSHYVWTFPLMNKSDVVPTFLSFCSYVSRQFRLPILSFQTDNGREFDNFTLRK
YFQDNGIAFRLSCPYTSAQNGKAERTLRTLNDSVRTMLLHAHAPPSFWAEALATATYLLNRRPCRATGTATPHEFLFGTP
PTYAHLRVFGSLCYPNQSATAANKLCARSVPCVFLGYPSDHKGYRCYDPQTRRVITSRHVVFDELQFPFQQQSHRPVCSA
PTASDGLPEDDPVITPGYQAVQRRARPPSSPARSAPSSTLSSAATPTAPEPPASPSATTPTEPAAASSVSGASPGHYDAT
PSTSSPPGASTSSSPAAASSTPPRTPVVLERHHMVTRARDGIFKPNPRYAMATTAGDTVNISPIPSSARAALRDPNWREA
MQREFDALQSNHTWRLVPRPPRANVVTGKWVFKHKLHPLERYKARWVVRGFTQRPGIDFGETFTPVVKPATIRTVLTLVA
GRRWPTRQLDVSNAFLHGHLDERVLCQQPIGFVDATQPDAVCLLSKSLYGLRQAPRAWFTRIAGFLGSIGFVATRSDSSL
FVLRRGSDTAYLLLYVDDMVLTASSEALLQDIIARLQSEFAVKDMGPLHYFLGVDVQHRDRGFFLSQAKYAEELLDRAGM
SNCKPALTPIDTKAKLPSTTGAAVRDPGEYRSIAGALQYLTITRPDIAYAVQQACLHMHDPRECHLAVVKRILRYVRGTM
SFGLHLHGTGVPKIIAYSDADWAGCPDTRRSTSGYCIFLGDALVSWSSKRQATVSRSSAEAEYRAVANAVAECIWLRQLL
HELHYDVPSATVAYCDNVSAVYMSKNPVHHRRTKHIELDIHFVRERVALGELRVVHVPTDQQFADVMTKGLPTFTFTSFR
SSLTVGAPDAVTAG
>Copia-94_VV#LTR/Copia 673-4767  [Vitis vinifera]
MATKNPIFTSVISGSPTITSEKLIGSENYLSWSASVELWFMGQGYEDHLVTPEDAIPDVDKVQWKKIDAQLCSVLWQSVD
PKILHHLRAYKTCFKFWTQAKGLYTNDIQRFYKVVSDIVHVRQQDMDLSTYIGRIASLKEEFLTLMPFTNGAEAQQIQTD
KFFMVLTLIGLRPDLESVRDQILASPSVPSLDDVFARLLRLSSTQTLSTDGPSDSSVLASQTNSRGGRSGNRGRGQRPQC
TYCNKLGHTRDRCYQLHGRPPRTAHIAQSSDPLLSRPDSAASSTSQSITLTGSDYDAYLRYQAATSASVASVAQTGNVSV
CFTQSPSLGPWILDSGASDHISGNKHLFSSITTTSALPTVTLANGSQTMAKGIGLAHPLPSLPLHSVLYAPECPFNLISI
SKITRTLNCSITFSDKSVILQDRSTGKTIGIGRESQGLYHLTSPSSPAACISTDAPLLIHSRLGHPSLSKFQKMVPRFST
LSSLACESCQLGKHTRVSFPKRLNNRAKSPFELVHTDVWGPCRTASTLGFQYFVTFIDDYSRCTWLFLMKNRAELFSIFQ
KFYAEIQTQFNVSIRVLRSDNAREYFSTPFTSFMSQHGILHQSSCAHTPQQNGVAERKNRHLVETARTLLLHSHVPFRFW
GDAVLTACYLINRMPSSILHDQIPHSLLFPTQPLYFLPPRVFGCTCFVHTLTPGQDKLSAKATKCIFLGYSRLQKGYRCY
SPDTHRYFLSADVTFFEDSPFFSSSESLPISEVLPLPYISPPSDALSRPLQVYHRRHRAVAPPLSSAEVPDDSPPVPPIS
PTPTLSSTDHLPIALRKGNRSTRNPHPIYNFLSYHRLSSSYSAFVSTLSSVSLPKSTSEALSHPGWRQAMVDEMAALHSN
GTWDLVSLPPGKSTVGCRWVYTVKVGPDGQVDRLKARLVAKGYTQIYGCDYGDTFSPVAKIASVRLFLSMAAMCHWPLYQ
LDIKNAFLHGELLEEVYMEQPPGFVAQGESGLVCKLRRSLYGLKQSPRAWFGRFSSVVQEFGMLRSEADHSVFYHHNSSS
QCIYLVVYVDDIVITGSDQEGIQRLKQHLFNHFQTKDLGKLKYFLGLEIAQSSSGVVMSQRKYALDILEETGMLECKPVD
TPMDPNVKLVPGQGEPLRDPGRYRRLVGKLNYLTITRPDISFPVSVVSQFLQSPCDNHWDVVIRILRYIKGTPGQGMLYE
DRGHTQIVGYTDADWAGSPSDRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRQLLQELRFGK
DEQIKLVCDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADIFTKSLRGPRIKYICNKLGAYD
IYAPA
>Copia-96_GM#LTR/Copia 128-4495  [Glycine max]
MAVNNQHSTSDHLVNPANPYFLHPGENPVVVLVSPPLTESNFHQWERDMVVALESKNKEHFLFGTLPCPPPTDPMHEAWR
RCNRMVMSWLTRSMSPAIKQSVMWMDSAFEIWKDLKDRFSHSDKFRIADLQDQIQNCKQGNSSISEYYTRLKILWKELEL
YRCFLLCTCSSPCSCGLISKLKKEREDDCVIRFLRGLNDVYAPVRSQVMLMEPMPSLVKTFSLVLQHEREFVGDFTSQSP
TDTVAFSSVNDNTNVTSSNKSFSNNHKVPSNSGKGPKGNKLCTHCGKTNHTVETCFFKHGFPAGYRNRGKGGSSNFKSSA
SLAEVDSDITSQTAALEDSSTRDQFRLSKDQYNAIIALLQQTKDSSTSVNHIQHFVVNQSGIDPSLWILDSGATDHICPN
KSSFSFLKKIKPIHVRLPNNSSVTAFFAGDIHLGDLLLKNVLYIPNFSVHLVSISKLLHTIDCLVLFCKSFCLIVQTSNF
KMIGVAKQHHGLFHLQDSSDLKSFSFFRDSCIVLDKNSTTDSIVNATDSSMLWHSRLGHTSNKVLQQLCSQYNEISFDSI
KPCDTCHYAKQKKLPFSLSTTVSSKFFDLIHVDIWGPYSVPSFEGHRYFLTVVDDFSRFTWIYLLKTKAEVKTVLPNFIL
LIQNQFSVKLKKLRSDNGREFFLTDFLDSHGIFHETSCPETPQQNGIAERKHQHLLNVGRALLFQSKLPIHFWSYAIRHV
VYIINRLPSSFLLHNKTPFELVFGSKPDFSNLRTFGCLAFAHTLDSGRTKFDKRASKCIFIGYKAGTKGYLLFNLHSHSF
LVSRNVIFYEKVFPFAVDNTDHGTFNGVSTDLSNFDSLVDVDISTQTQDFHQHLSDQNHVIDPLSISSTESVSHNDTLPI
TVGPVRFSTRLKKPPSYLSDYHCGNISSHSTSTHSTTPYPLQSVLSYSKCSANHTSFCMSISAHPEPHSFKEANKLDCWK
EAMMAELQALQANNTWSLVQLPSGKPIVGCRWVYKVKYKADGTLERYKARLVAQGFTQTEGVDFFETFSPVAKLTTVRFL
LSVVVANNWFLQQLDVDNAFLHGDLHEEVYMKPPPGMPISDPSLVCKLQKSLYGLKQASRQWNQKLTSALLQLGYVQSTS
DYSLFVKQTPSSFTTLLVYVDDVVLTGNSLVEINAVKQQLHDQFHIKDLGDLKFFLGFEVARSKTGLILNQRKYCLEILS
EFGLTGCKPANSPANASIRLNSDEGDLLEDVTSFRRLIGRLLYLTNTRPDIAFVVQQVSQFVSKPRTPHLQAALRILRYL
KGAPGLGLFYPVDNDLKIQAFSDSDWATCPVSRKSVTGYCVFLGNSLISWKAKKQSTVSRSSTEAEYRALASLACELQWI
KYLCDDLHLSILVPFCTFSDNESAIQLAKNPSFHERTKHIEVDCHLIRIKIHEGLILLSHVPSGCQLADMFTKALYPTPF
KQNVCKLGLVDIHCPP
>Copia-104_AA#LTR/Copia 87-4139 via tfasty with Copia-137_AA, 5 frameshifts and 1 stopcodon. [Aedes aegypti]
MIPRDVDQQQNSSSRTNTTRGGVAAGSGDGVRAGGVVRAYGNPVNLPAIEKLQGRQNYASWAFAMKMTLIREGSWRAVKP
AEGEAVDPEASERALATICLRLEKNNYSLVQNANSAKDAWEKLRKAFQDDGLIRRFGLLDRLTSVKLENYGTVEDYVDDL
VSTAHDLSEIGFEVNDQWLVSLLLKGLPEYYHPMVMGLQASGLALTADMVKAKILQDVKWPITSSGREGALYTKHNPHKS
RRPKGAVERKDKTCFNCNKLGHFAAECPQRQKQGQNSKPKGKALCAMMAVGKGSAEEWYFDSAASSHMTRSEENFTKQEV
FAHPIETANNQCMMSSAKGVVNLDLQEGPIEVQDVLHVPDLATNLLSVSKICKKGLTVTFNFRSCKVCDEDGDVIASGTE
KNGLYRLNCKKPETSLLTTETKIWHRRLGHLNQQSMKKLETMADGIELRTEKTFDCVACATGKQARDPFHSSTTRAEGLL
DLVHTDLCGPIEEPSLGGSRYFLTFVDDATRKVFVYFLMSKSSVKDVFMNFKSMAERQTGRNLKVLRSDNGSEYVNRRWK
RAWERDGIIHQTTCSYTPQQNGVAERMNRTLVEKARCMLNDSKLSKKFWAEAVSTAAYLVNRSPSRSLESITPEEAWSGR
KPVLKHLKIFGSKAMIHVPKQKRQKFDPKAVEGIFVGYAEKSKGYRIFMPNDSSIVTSRDVKIINEGESSAIDEEYIGEV
EFMELHSWIETDxTNRSGSHVQHDAVSVVVPEVVPHDDDEMCPLLSDADSSEDEFADAEPHVALPPQSTRLADEQQLSRH
SGRERRLPGKYNDYICYSSFAGPDEFPQNESSDVTSDPLSYNEAINRPDRERWIAAMDNELKALDSNNTWELTDLPEGRK
AIRNKWIFKTKRNADGEISRYKARLVVKGCSQRPGIDYEEVYSPVVRYSTIRYMMALAVQYDLDVEQMDAITAFLQSDLK
EETIFMEQPEGYEKDPTKVCKLKKALYGLKQSSRVWNRQLDEAMRQFGLTRSRMDPCLYFKVHKNEMIFVTIYVDDLLII
TNNAYLKKRLKEFLNNRFQMKDLGTAQLCLGLRINRDRKGGTLRLDQQHYIEEVLKRFNLNNCRPVATPADPGNKLEAST
SEETAEEIQEMQNVPYKEAVGCLTYLAQGTRPDILLAVNKVSQFSSNPTRRHWEAVKRIMRYLKGTIDYCLEYSREGDPQ
FTGYTDADWGGDPASRKSTTGYIFKMMGGAVSWNVKRQASVALSSCEAEFVALSHTTQEALWWKQLLQEIGSQRSISIFC
DNQSAICIAQNEGFNPKTKHISIRFHFVKDTLERGDIKLYYIPTQQQPADGFTKVLPKQKHEVFRSYLGIVN
>Copia-100_BRa#LTR/Copia 25-4087 via tfasty with ATCopia10, 86.7% SW:4690, 1 frameshift. [Brassica rapa]
MINSMKNPIIGIFDETGDFSLWKIRMMAHLGYLGLKEVLTDSKLEMQVPLSKSEEKQAQTDGDEKPSSEPLVKNVPDPSK
IEKSEKAKNLIVMNLGDKVLRKINADASTAEIWALLNHLYTESSLPNRIHLQLKFYTFKMAESKSIDQNVDDFLKIVTEL
GSLQVEVSDEVQAILLLTSLPTNFDQLKHTLKYGRESLSLEEVISAARSREREVTESKSERDSGSALFTNERGRSNSRGY
KDSKNGKGRGRSNSKSRVTCWFCKKEGHIKKDCYARKRSENDGQGEAGVITEKLVFTEALNMDHQDAKSQWVIDSGCTFH
MTSHKEWLFDFCEKDPLMILLGDDHTVESKGYGTVRVNTNGGTIKVLKNVRYVPNLRRNLISTGTLDKLGYSHQGGDGTL
SFFKNEKLALRGILKNGLYLLDGETEMSESYNAETQLSKTALWHSRLGHMNLNSLKTLVGKGLIEKKEITDLSFCEHCVL
GKSKKLSFNVGKHNTEDVLGYVHADLWGSPNVTSSLSGKQYFLSIIDDKSRKVWLMFLNSKDETFDMFCEWKALVEKQVN
KKVKVLRTDNGLEFCNRKFDEYCRKQGIERHRTCTYTPQQNGVAERMNRTVMEKVRCMLSESGLGEEFWAEAAATAAYIV
NRSPCTAIDHNVPEEIWLGRRPGYQHMKRFGSLAFVYQDQGKLKPRALKGVFLGYPQGTKGYKIWLLDTEKCVISRNVVF
QEQKMFKDVNGQVQEFQGADLDEQDVIQHSLPEIVQNKPEKEDNTEKGGATTSGTPHEEDDSVSEVEGTAIEDVVELANY
QLAKDRKRREPVPPVWLADYSNIACALIAAEEIEEEEPGCYHDALKDKDWVLWNGSMADEYESLKKNNTWDIVDRPKDKT
VISCRWLYKKKPGIPGVEDPRHKSRLVARGFTQREGIDYEEVFAPVVKHISIRVLMSVVVNHDLELEQMDVKTAFLHGNL
EQELYMEQPEGFEVNPGKDQVCLLKKSLYGLKQAPRQWNKRFNSFLVSQGFTRSDSDMCVYIKEVGPEDYVYLLLYVDDM
LLAAKRKSEIQKLKDVLSSEFEMKDMGPSSRILGIDIKRDREQGILKLCQSGYIQKVLKRFRMTESKAVATPMGSHFKLA
SVKYADERIDTEKIPYSSVVGSVMYAMVGTRPDVAYALGLVSRFMSKPGSVHWEALKWLLRYLRGSADLNLIYSKSDANL
RVQGYTDSDFAGDLDRQRSTSGYVFTVGGNTVSWRSSIQPVVALSTTEAEYIALSEAIKEAIWIKGLLYEMGFEQQKVSV
WCDSQSAVSLSKNKVFHERTKHMAVKYSFVKDIVEEGEIEVLKIHTSRNPADMLTKCIPVQKFEAALELLKLTC
>Copia-94_SB#LTR/Copia 128-4437 via tfasty with Copia-121_SB, 88.0% SW:5245, 2 frameshifts and 2 stopcodons. [Sorghum bicolor]
MSTDTRVYGEKESLDRVFGQAATNLVWPMLTKTNYQEWSSHVRCNLEGMLLWDAIEAEDAAKVERHRDRLALGAMLRGVP
QEMHSLLLNKKTVKEAWEAIKTMRLGADRVKEVNAQKPLAEFEHIAFKSGETIDDFAIRITKLVTKLWGLGEESVTDTRM
VKKFLRVVPPRYGQVAVAIEMFKDLKTLTIEELVAHLRAAEERFEPSVDQLTDKVPKLLLTEEEWASKQKNRADAESSSV
SGSKGQGRSVKKERSGGRGGGDSRDSGGRNLTSMGTPRRKGRCRKCGIYGHYGKECKTKPKEEREEIAHHANADVDPSLM
VAQVCNVVRTSEAGMQGVFLKQDRVFPGSYDDGAWVLDTGATNHMTGSREALATLDGTVRGAVRFGDGSTVQIQGIGAVT
IAGNAGEHRVLTEVYFIPSLKCNIISLGQLEEGGCRVEIDKGILKVFEREQGKKEERRVLIHAERRNRLYVMKVDLTSPV
CLLTKLDDVAWLWHARYGHLNFRSLSDVGSKGMVEGLPAIRRLDQVCDGCALGKLHRTPFPQASTYRAQSKLELTHGDLC
GPITPSTPGGKSYFLLIVDDYSRYMWLELLATKDEALVYFKKIKTAAEVESGRRLKVFRTDRGGEFLSNAFSEFCKEHGI
KRNTTTPYTPQQNRVVERRNQTVVEMARCLLKSIGVPGKFWGEAVRTAVYLLNRSPTKSLHGKTPFEVWFGRKPNVRHLR
TFGCTAFAKTTGPGVNKLADRSLPGVFLGYEPGMKGYRVFNPVNKKLVLSRDVIFDEKRRWNWEEKAAAEHNAQLDPQFT
VVYSDDFQRALYTIRQxTLTLKMFSLIRGGGGAMxTDGEQEQAQSSLAAAIPSEGGASSTPPHTPLSSVVSSTMPHIQWA
TPPTGEGFDSEGVPLRFRTIPDLLDATDEVQHFEYSGVCLSAADEPVSLEEAMTQDCWRQAMKSELQAIEDNKTWVVSDL
PKNHKAIGLKWVFKIKKDSQGKIVKHKACLVAKGYAQRHGVDYDEVFAPVARIETVRLLLALAGHSGWEVHHMDVKSAFL
NGDLTETVFVQQPPGFSMGSRGSVLKLKKALYGLKKAPRAWNVKLDRELVALGFQKSKLEHAVYRRSNRKSFLLVGVYVD
NLVISGPSVDEIKHFKQEMQKKFSMSDLGLLSYYLGIEVQQTSKGITLCQSGYTAKILESMGMSSCNSCATPMEVRLKLS
KTKEGEEVVEATAYRSVIGSLRYLVNTRPDIAFSVGVVSRYMEAPGKEHWAAIKHILRYLKGTVGLGCNYERGADLKPFL
MGYSDSDFAGDVEDRKSTTGTAYFLRKSLVTWASQKQKIVTLSSCEAEYVAGAAAACQGIWFSRLVGDLMGTKEAPVKLL
MDMSAIALSKNPVHHDRSKHIDTIFHFLRECIEDGRVEIDHIGTGDQLADMFTKVLGRARFLELRKRLGVVEVKQV
>Copia-87_VV#LTR/Copia 89-4437 via tfasty with Copia-62_Mad, 73.6% SW:3621, 1 frameshift and 2 stopcodons. [Vitis vinifera]
MSAKTDMSISNSKKSSMVTIHETASPTISIKLDGANYRVWSQILEMHIAGRKKKGYITGRKVAPAEDDPNYDEWEAEDAL
VKSWLINSMTDRLMSHFVQCGTTKEVWDAVKRSYLDVSDSSQVYELMKKSFQSRQGGRPLAEYYNELNSIFMELDYRRPN
DMTCVADIEKQRKRTAEDRVYIFLAGLDHSLDQVSGRVLATSPLPSLEEAYSLVRREAxRQVTMGTEDHSEASAMAVHKN
NTRPTPFTPSTDSSSRFCTHCNSTKHTVDVCWKKHGYPEWYKLKQAERKNKKSAQVALTDATPPASASQVSRLSSQEGNS
GLAFISTASNTWVIDSGATDHMTSHSSLLDSLMPSPVKSVQVANGTPMPISGAGNVSLSPTLSMSSVLLAPSLSNSLLSI
SKITKHLNCSVTFHSTHCVFQDNLTKMTIGIGKERGGLYYLEGARELQFESDRVFQVARETSDREKILLWHCRLGHPSFS
YLERLFPQLFRNISVSSLRCEQCIYAKNHRVPFKISLNKSPIPFTRVFTNVWGPFSTPSASGHKYFVSFIDDCTRVSWVY
LLKSKNDVLHVIPQFSKMIATQFNTQVKVFHSDNGREFVNQSLADLFKENGILHQTMCTYTPQQNDIAERKNRHILEVAR
ALCFTMHVPKRFxAEAVMTVVFLINRMPARAIDYQTPLRMLSQFHPIPSALNLCPKVFGCVCYAHIHSHQRDKLDPRALK
CVFLGYSNSQKGYKCFHPPTGKYYVSMDVQFCESESYFSGNVSLVPLQGEISSKEEERLWLEEKRLWISGQGEDSTDLGK
GESLDAPNPMATEFESEERRDERPARLFQQGYTRKNKDATVIPPLGSNTPLDDTTMPLDDSSETNPKVHVPSPLTSETAT
LNPQVGEQGRRYPLRDRKEPDRLGFSKSSSNVVYPISDFVSYHRLSKTHLAFALQLSSMSIPSHFQEALEDPKWKSAMVE
EMKALQKNSTWEMVELPQEKKTVGCKWVFSVKYKSDGTIDRYKARLVAKGYTQTYGIDYQETFAPVAKMNTIRVILSLAV
NLDWPLRQFDVKNAFLHGDLLEEVYMDPPPGFTPKGGKVCKLKKALYGLKQSPRAWFGRLSYSMKEYGFKQAMADHTLFY
KRDGDDITLLIVYVDDMIVTGSNSTKIEKLRSYLAKEFEMKDLGALKYFLGIEVSRSKQGLFLSQRKYTLDLLVETGNSA
CEPVDTPIEINHGLSIYPDQIPTNKERYQRLVGKLIYLTHTRPDLSYAVSVVSQFMHNPSDRHMNAVNRILAYLKSSPGK
GIMFSRHGHLDIEGYTDSDFAGSRLDRKSTSRYVSFVGGNLVTWRSKKQNVVSLSSAEAEYRALHHATTELTWLRILLSE
LGFGPKKPMVLFCDNTTAIEIANNPVQHDRTKHIELDRNYIKDNLDSGMIKVPYIKSADQLADMMTHVVTSGPFYASLSK
LGMCDIYAPT
>Copia-86_ST#LTR/Copia 1122-5000 via tfasty with Copia-67_GM, 86.0% SW:4777, 2 frameshifts. [Solanum tuberosum]
MYIYFAVIPLHSHASSVTVFNGLNFSEWHEQVQFHLGVMDLDLALLNDKPTAITDKSSEDEKSFHKSWERSNRLSLMFMR
MTVANNIKSTIPQTESAREYLKFVEERFRSADKSLAGTLMAELTTMKFDGSRSMQNHIIEMTNIAARLRTLGMKVDDTFL
VQFILNSLPLEYGPFQINYNTIKDKWDVSELSSMLTQEESRLKKQGGHSINLMGQGAGKGLKVKANKFKKKKAPAKVPQD
AHKELKADVCRFCKKEGHYQKDCLKRKAWFEKKGTFSAFVCFESNLVEVPNNTWWLDSGATTHVSTMLQGFTTIQTTNPN
KDFLFMGNRMKAQIEGIGTYRLILETGHHLDLLQTLYVPSVSRNLISLSRLDVSGFDFKFGHGCFNLYKNNCFYGSGVLI
DGLYRLKLDNNFSESLLTIHQNVGIKRSSLNESSAYLWHKRLGHVSKERLKRLVKNEILPNLNFVDLDICLDCIKGKQTK
HTKKGATRSTQLLEIIHTDICGPFDVPSFGGEKYFITFIDDFSRYGFIYLLKEKSQAADALKVYVNEVERQLDRKVKIIR
SDRGGEYYGKYNESGQCPGPFAKFLEEHGICAQYTMPGTPQQNGVAERRNRTLMDMVRSMMSNSSLPKSLWMYALKTVVY
LLNRIPSKAVPKTPFELWTGRKPSLRHLHVWGCQAEARVYNPHEKKLDSRTVSGYFIGYPEKSKGYRFYCPNHSSRIVET
GNAKFIENGEVSGSVERQSVEINEVRVNIPLPMNVPTSTPITNVVPLVEEHFNNVEQHLGETLQEGTNSQVSDANEPQTV
PLRKSQRERKSAISDDYVIYLQESDFDIGINKDPVSFSQAIESTESDKWIDAMNEELKSMEYNKVWDLVQLPESSKRIGC
RWVFKTKRDSNGNIERYKARLVAKGYTQKGGIDYKETFSPVSKKDSLRIVLALVAHYDLELHQMDVKTAFLNGDLEEDVY
MDQPEGFEIKGKDQMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFKEITVDRCIYQKISGSKFIFLVLYVDDILLAAND
LGILRETKDFLSMNFEMKDMGEASYVIGIEIFRDRSQGLLGLSQKGYIERVLERFNMNNCSAGIVPIQKGDKFNLMQCPK
NDVERKEMETIPYSSIVGSLMYVQTCTRPDISFAVGMLGRYQSNPLDMTRMIDTGKFWKMQRKFVACYEATIHALWLRNF
ISGLGVVDTITKPLKIYCDNTATVFFSKNDKYSKCAKHMELKYFTVKEEVQKQRVLLENIRTDLMIADPLTKGLQPKTFK
EHVQRMGLGCTYD
>Copia-88_SB#LTR/Copia 162-4475 via tfasty with Copia1_ZM, 2 frameshifts. [Sorghum bicolor]
MASSSSHHDARSAFRHPVSDKLTRNNFVLWKTQFLPAVRGAKALGILEGTTPEPPQELEADVDGKKKKIPNPEHDSWVEK
DQQLLGYLVNSVSKEVLAGITTATTSAQAWKALGVMFAAQSRARVTNLRMQLATVKKGDLTTVEYFNKIQNIKDELASAG
VTINDDEVVAHMLNGLDFDYHPFVSSMMGRSGDLSLSELYSLLMEYDLRLEMYQGAEQHQSSANVASRGRGNRGRSGGRR
GGGRSNLGRPGQSNQNFSKQGKNQQSNQKQPCQICRKDNHEAKQCYFRYEEDDQYRGRPSAAYGIDTNWYADSGATNHVT
GELEKLSVRDRYNGSDQVHTANGTGMQISNVGHTIVHTPTSNLFLNNILHVPNATKSLASVHKLAKDNNAYLKFHPDFFV
IKDKDTKKILYRGRCQGGLYPLSSGTSSQGQRPNPEALAAHMPSTSLWHSRLGHPAIPIVQKIISSNSLPCASDKSVESV
CDSCQRAKSRQLPYPVSNKISSSPLELIYSDVWGPAPTSVGRHNYYVSFIDDYSKFTWIYLLRHKYEVFKVFQDFQQLVE
RKFSRKILCIQSDWGGEYEKLNSFKKIGISHRVSCPHAHQQNGAAERKHRHIVEVGLALLANASMPLKFWDQAFLTATYL
INLLPSKVVNFEVPIIRLLGETPDYSNLRVFGCACWPNLRPYNSRKLSFRSTQCAFLGYSSMHKGFKCLDISTGRIYISR
DVVFDEAVFPFAALHSNAGALLQKEIILLPPSLRNPGDDNCYDFNSTNATNVPDASTVPQENSSASSSECLPQFCFPAPS
GLPGTAHQIHADPGMVSMSGSPARGGGSGSPAIEATEESVPGTHENSRSMTLPTDDQAVVPVPEDQPRSSMSLGFSQSMP
VSDETEPSGAPSALPSAPEPQRPKTRLQSGIVKPKRMYDGMIRYSFFSTTGEPNSVQEALANSKWKQAMEAEFDALKKNK
TWRLVPSKSGQNIIDCKWVYKIKRKADGSIDRYKARLVAKGFKQRYGIDYEDTFSPVVKIATVRLVLSIAVSRGWCLKQL
DVQNAFLHGVLEEEVYMKQPPGFESDETPHYVCKLDKAIYGLKQAPRAWYSRLSNKLISLGFVASKSDTSLFIYNRGGIM
IYILIYVDDIIVTSNDPKAVTALLADLREDFALKDLGMLHYFLGIEVKEEQGGITLSQGKYAQDLLKRVGMADCKPCTTP
LSASEKLSSYEGTPLSSEDGTRYRSVVGALQYLTITRPDLSYAVNRVCQFLHAPTTIHWTAVKRILRYIRYTIKMGLHIH
KAAVPSLSAFSDADWAGDVDDRRSTGGFAVSNLISWSARKQPTVSRSSTEAEYKAMANATAELIWLEQLLTELGIKLRRP
AILWCDNLGATYLSANPVFHARAKHIEIDFHFVRERVLRKQLQVRFISTRDQLADGFTKALPVAKLRDFVHNLNLTSG
>Copia-94_Mad#LTR/Copia 263-4802 via tfasty with Copia-13_Mad, 2 frameshifts. [Malus x domestica]
MVTASQLQLLQSPITALISTISTSVNVKLDDSNYLNWHFQMQLLLESNGIMGFVDGSTPCPARFALILVNLELDSANSSS
GIETDEYTVWKLHDRALMQLVTATLSPVAMSCAIGSASSRELWTRLKEQFSTVSKTSIFQMKSNLQTIKKGSDSVTRYLQ
KIKEARDYLSAAGVFLDDEDIIILALNGLPPEYNTFRTVVRGRESVMTMKEFRTQLLAEEEIVDSHSHVPFLSAMVANNN
SSTVHKGSNQAFNSGGGHSFHHTGGQSYGVSGGFKPYVHKNKGKGKFNGGQRYYTPRPMYHTQTHVFPTPTPGVLGSSPS
APLLQTCQLCNAEGHTAPYCYNKSSDRQQCQICGKFNHTTWYCFYNEKGPSYMGPQYSQRAGTPMQGYSYNVPHVLHGSH
PSSLQAMNTVFSPTSPSSHMGSVASTSQSPQVWLTDSGATTHMTADLNNLSLASPYPSNEVVQTANGEGLRVSHIGSSIL
NTSKNPIKLNSILYVPKLTQNLLSVHKLCLDNNCWLIFDAFYFWIQDKVTGRIMYKGPCSNGLYPIHSLSTSFLPSQSSH
VAFLGHLVGSSLWHTRFGHPSNNVVSLLLKQANIPCNKDVVSHMCQSCLKGKFTKLPFPSTHVKSVIPFQIVHSDLWGPA
PCTSIDGYKYYVTLIDECTRFCWLFPLSNKSDFTDVFVTFCAFVSTQFSTSVKILQTDGGGEYISNKLHTFLKSKGIVHH
KSCPYTPEQNGLAERKHRHIIETTVTLLQHATLPSQFWTFACQTAIYLINRMPTPVLQNQSPFQVLYGQNPVITHLRVFG
CSCYPLLRPYNTSKLQAKTTKCVFLGYASQYKGYICYEVSKAKFFISRHVVFNETEFPYLSLLQLSKQNSVSHVPCSPSS
FTPVPNHQNVLVVPLPPVSSSTSPPVPPSPDSSVAVHSPHMVASPPFSSLPSSSSITATSSTTPSLPVDHEFSPDRLQVV
LPIAPLNMHPMQTRSKNGIVKPKVFFSSLAPSGDVDMSLIEPVSYKTAMKSSVWLAAMKEEIAALHSQGTWSLVSLPSQK
NLVGCKWIFKIKKNSDGSIARHKARLVAKGFSQEEGLDYGETFSPVVKPTTVRLVLALAAQFHWSLRQLDVKNAFLHGIL
QEEVYMAQPPGFADPVHPHFVCKLHKSLYGLKQAPRAWNERFTAFLPSLGFISTYSDSSLFVKHVGSEIVILLLYVDDII
LTGNATAAIQQVIQSLTTEFDIKDLGTLHYFLGIQISCTATGMFLSQTKYVQDLLHKTEMSDCKPCDTPCLPYNRLLKDD
GVPFSEPGTYRSIVGALQYLTFTRPDIAFSVHQVSQFMQNPMVSHFTAVKRILRYLKGTLSSGITYAAGEVGLKAFSDAD
WAGDPNDRRSTTGFVVFLGSNPISWSSKKQQTVSRSSTEAEYRAMSSTAAELDWIQQLLTFLHIPLSCAPVLFCDNLSAI
ALSFNPVQHQRTKHIEIDVHFVRERIAQKKLLVQFVSSGEQFADILTKGLSAPLFRTHCTNLMLGSSPMHEFEG
>Copia-91_VV#LTR/Copia 162-4610  [Vitis vinifera]
MASETSSSVTGTMFGQELVSNGGAEGSSFLITRHKLTGHNYHQWAKAVLMFITGRGKDEYLFSTTEPPKKDDKRFKVWNT
ENNLVMSWLINAMDTEIGQNFLFYDTAHEIWMAAKETYSDSDNTADLFDIKGALHDLRQGEMTVTHYYNTLSRFWQQLDV
FETMDWECPGDASRYKRIIEKERVFKFLLGLDKSLDEVRGRILGTKPLPTIREAFSEVRREESRKKLMMGTRPFSNVQEG
SALISQGSTNIQEGTALVSRGSTYDARQKKGRPWCDHCRRPGHTKETCWKIHGKPTDWKSNKEKEARAFVADPEGKERST
NDSALFSKEQVEWLQKMFSQGSSTNPVISTGSAAQRGNFLTALHTKTEDSSGWIIDSGASDHMTGDISVLHDCSPCHENY
KVRIADGSLSTVTGIGRVIISETLTLNQVLLVPKLSCNLLSISKLTRDLNCVAKFSSSHCLFQDLASGMMIGNAKESKGL
YWFRAAGKQDSQAHHVSFSTPDPRLNLSLDSNKESTIMLLHYRLGHPNFMYLSKMFPALFKNKNPKLFQCEICQFSKHCR
NSYPSQNYKPSKPFSIIHSDIWGPSRVHNISGARWFVSFVDDHTRVTWVFLMKEKSEAGSIFKFFHSMIQTQFQAKIQVF
RTDNAREYFNVILGNYLLENGIIHQSSCIDTPQQNGIAERKNRHLLEVARSIRFTTHVPKQFWGEAVLNATYLINRMPSR
VLKFDTPCQTLSKNFPLNRIITDIPLKVFGCSAYVHLPPHQRSKHDPKSVKCIFIGYSSYQKGYKCYCPSTRKTYNTMDV
TFLENVPFYTKTHIQGENPVNQQAEYQFWDVPVPDFGVPEPNFSSEPSMAPDGPPSESRQIQGDKESIGKELQVYSRRQK
NPKPVDLHPELPPVPCQTDDPKSNPTGVIQGNIDSPVITDDIDSMDDLNRPVAHRKGVRSCTQHPISKFVSYEKLSPNLR
ALITNLESIALPNCIQEALQHPEWRKAVNEEIQALQKNDTWKITKLPQGKRPVGCKWVFNVKYRADGRIDRYKARLVAKG
FTQTYGIDFQETFAPVAKLNTIRVLLSLAANLDWNLHQLDVKNAFLNGDLEEEVYMEIPPGLKLSSSNDLVCKLQKSLYG
LKQSPRAWFERFTKVIKGEEFSQGQSDHTLFIKRSPGGKITVLIVYVDDIIVTGNDEEEISRLKTVLSKEFEIKDLGTLR
YFLGMEVARSSKGIFVSQRKYTLDLLKETGMLGCKPSNTPMDPFNKIGSKEDMVAVDKGRYQRLVGRLIYLSHTRPDISF
AVSMVSQFMNNPTEEHQEAVYRILRYLKMTPGKGLFFKRVASRDVEIFSDADWAGSLTDRRSTSGYCTYVWGNLVTWRSK
KQSVVARSSAEAEVRAMAHGICEGIWLKRLLEELQLAPHGPMKLMCDNQAAISIAKNPVHHDRTKHVEIDRHFIKEKIEQ
KIIEVDYIPTRQQIADIMTKAVPRTQFDILLSKLGMINIHCPA
>Copia-106_SB#LTR/Copia 57-5384 via tfasty with Copia-22_BD, 82.0% SW:5879, 4 stopcodons. [Sorghum bicolor]
MATDRYSAKPCVFDGVDFQFWKAKMESYIQAQGFTIWEKVYKPYEVPEIDGVTTANMAQVEANSKARNYIIQGLGKSDFD
RVVHLKSAYQVWKALCDYHEGSSTIKEVRQDMYKKDYMRFEMKPGEALDDFFARFNKILSNLRAVNVTYTDAENARQLLG
ALDMSIWEMKGTSIRESTVMSTLTLDVLYSKLKTHELDVFARKNIANKSIALASQSSHFNGDNTSTSYALSSLSSLTDEQ
LEQLPEQDLALISTRFTRALQNVRSRKRGYSGPQKFFECGDPNHIRPKCPKFWARVAKDKDDEEDEIERTKKHTIRSNKK
KGYLNHKVVHRVLSALEQVNMSDVDTDSEDDTSNGKKNLIGLCLMASSKSSNDNDASDDSYNEVEPSYDELAKAVEKLGT
LLEKRNKKIKKHDVLIESLYAENDRLKTLIPDDDSCKSCDIVYTELTSLRDMHALTLEKLKVEKDKNEKHVCATVEPTSC
HKCELLKLKLKDANVKITQLKENFDILEVLSCSNCGKNDKTKKDACENCATLLKRIDYLQGQMGTKMLNQILEQKTSTHK
TGLGFDPYAHSKSHAPIISKSLGNGKFEIANETKKTVFKSAGTMSSSNQENVNVASTNYKKYKVKYTCSHCGRDGHIVQF
CFRLAKQQKKEKAKARSYLRKTYSFVTRNMGGTQSKILCKNTRSVPTFASGRVSQYxIPKCLISNPSTEASTSCVSVxAS
RARKENIWLVDSGCSRHMTGDKGWFSSLSHASQAESVTFGDATSTPVMAKGIVKVNDKFMFKDVALVENLKFNLLSVSQM
IDEDLEVCFKKGECKVLDSSGDIVFKISRFGRVFKADFDVVHGAKFRCLVANVSKGLFFWHRRLGHVGFDHLTRVSGMDL
IRGLPKLKNESDVVCSSCRHGKMCAGSHPPLTMVMTNEPGQLLHLDTVGPSRVQSFGGKWYVLVIVDDFSRYSxVYFMAS
KDEAFGHFRSLVLRLSIDHPGSLRAIRTDNGTKFKNSSFDHFCTEKCIDHQFSSPYVPQQNGVVERKNKTSVEMARTMLD
EYETPRKFWAKALSTACYISNRVFLISKLGKTAYELRFGHRPSVSHLRVFGCKCFVLKSGNLDKFEARSTDGIFLGYPTH
SRGYRVLVLATNKVIETCEVTFDETSPGTSLSDAGTSAYVQGESIFIDEEEDEDDEDEVTIHTISPPHVPTTPSSTTATI
GHPQATASSTHVENEQEDAPEISAPRHIQRRHPPEQMIGDLNERVTRSRFVDTESYAHSAFVASFEPKDVSHALTDESWI
NAMHEELENFERNKVWKLVPPPPDHTIIGTKWVFKNKQSEDGVVVRNKARLVAQGFKQIEGLDFDETFAPVARLEAIRIL
LAFAASKGFKLYQMDVKSAFLNGYIDEEVYVKQPPGFENSKFPNHVSKLSKALYGLKQAPRAWYDRLKKFLIEKGFSMGK
IDKTLFVLKQGNDQLFVQIYVDDIIFGCASHALVTKFSEMMSKQFEMSMMGELTYFLGLQVKQTNEGIFVHQSKYTRDLL
HRFGMENCKPIMTPMGAATSLDLDEDGEPVDQKEYRSMIGSLLYLTASRPDIQFSVCLCARFQASPRASHLQAVKRILRY
LRGTLNFGIWLSASSYISLRCFSDADFGGCRINRKSTSGSCHFLGNSLITWSSRKQSSVAQSTAESEYVAAACCCSQILW
IVATLKDYGINLNKVPLFCDNTSAICIAKNPVQHSxTKHIDIRFHFLRDHVEKGTVELHRIDTEHQLADIFTKPLDSSRF
AFLRGELGVLHPSGLF
>Maximus_p3#LTR/Copia 6647-7333  [Hordeum vulgare]
MSADESLGSHQINSFAAFLEENLQVSSESSRVQSHQQNPQLKKMEDDRKQKGGKKLEQNTALDIPEDIYLDYCTPDEHET
MTKRKIRLQKIERRWAKEWKEYRFVTPKYAKKFALKPPGKRAPLEDYQEAHPSSLKTLDDYPDEKEKHLAKVKKRAEAAV
RKFNESSAAASTVATSSAAETSGSAIPQQKSVPSKAKASKPQEKPAPASAPKPSAPKPSAPKSSAPPQA
>Hopscotch_ZM#LTR/Copia 53-4366 [Zea mays]
MAMQSSLSTSAIPTSFAIPVSEKLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTISDASDRTVTVANPAYGRWIA
RDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASSVAEYFAKMRGFADELGAA
GKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYTQLLSYENRMHLQTGSSSLMQSSANARSPGRGMSWGRSG
GRGFSRGRGRGRGPSRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRSANSAAHQNGSN
VPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSVLHVPSTHKNLISVHRLTN
DNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLYPLPPHPDLRLKHNFSSTRVPLEHWHKRLGHPSRDIVHRVISNNNLP
CLSNNSTTSVCDACLQAKAHQLPYTISMSQSSAPLMLIFSDVFGPAIDSFGRYKYYVSFIDDYSKFTWIYLLRHKSDVYK
SFCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKY
WDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCL
DISTGRIYISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLPHDSCGNNMLTDHANNLPGSSSPLPFLAQHFLQGNSEVPT
SNNTAMALPASGPNEVSVPPALVPSSLVPAASPAPTGVSANAEPAPEADSLSSGPPVATESVTGVPDADPLLQAPGSSVA
HQTPDSAPLSAAAPRTRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSEALADPQWRAAMEAEFQALQKNNTWTLVPPD
RTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLH
GILEETVYMKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVD
DIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLLKRVGMECCKPVHTPVATSEKLS
ASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLS
AFSDADWAGCPDDRKSTGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWC
DNLGATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTKALTIGRLNEFRRQSQPRSVVIEG
>OPIE2_ZM#LTR/Copia 49-5626 Wised via estwise with ZRSiTERT0010007 protein + both termini extended with ORFs [Zea mays]
MDPKGKGIVINDKEKESFVNEPRDDKSNNSGSGHKRKDGKKKKTRRIKEIVYYDSDESSSSQKDDDNDYRKTVNSNFSFD
YSRIPHSSNSHLLSIPLGKPPHFDGEDYGFWSHKMRSHLFSLHPSIWEIVENGMKFDSSDSPMLINEQIHRNAQATTVLL
ASLCREEYNKVSGLDNAKQIWDTLRISHEGNDITMLTKMELVEGELGRFAMIRGEEPTQTYNRLKTLINKIRSYGSTRWT
DHDVVRLMLRSFTVLDPHLVNNIRENPRYTMMTPEEVLGKFVSGRMMIKEARYVDDALNGPLHEPQPIALKATRNKESLP
SKVAQVEAAGLNDEEMALIIKRFKTVLKGHKGQPSKNKTKGKRSCFKCGKIGHFIANCPDNDSDQEQGNKREKKKNYKKA
XGEAHSXKEWDSDCSSSDSDNEGLAATAFNKSALFPNEHHTCLMAREKKVVITRNTNTYDSSSDDESSEDEIDYSSLFKG
LDRTKIAKINELIDALNEKDRILEKQEDLLYEEHDKFVSTQNSLALEVKEWILSCELSTCNETISYLKGEINVLTAKLEV
ASNSCVENITICTRCKDFDVNACSEHLVSISKLNDEVASLNAXLKTSKSDFEKLKFARDAYTVGRHPSIKDGLGFKREAK
NLTSHKAPIPAKEKGKAPMASSAKRNHAFMYHDRRHARNACNDFDSYVYDSHAMFAPSSSYVYDRNVTRRNVVPKKNVIH
APRKVANEPSTIYYTCNAPFAICRKDKKVIARKLGARCKGDKTCIWVPKNICANLVGPNMXGYLRPKPKFALQVYASGGS
SWIIDSGCTNHMTGEKKMFTSYVKNKDSQDSIIFGDGNQGKVKGLGKIAISNEHSISNVFLVESLGYNLLSVSQLCNMGY
NCLFTNIDVSVFRRCDGSLAFKGVLDGKLYLVDFAKEEAGLDACLIAKTSMGWLWHRRLAHVGMKNLHKLLKGEHVIGLT
NVQFEKDRPCAACQAGKQVGGSHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQEKSETQ
GTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTMLGEFKTP
ECFWTEAVNTACHAINRVYLHRILKNTSYELLTGNKPNVSYFRVFGSKCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAY
RVFNKSSGLVEVSGDVVFDETNGSPREQVVDCDDVDEEDIPTAAIRTMAIGEVRPQEQDEREQPSPSTMVHPPTQDDEQV
HQQEVCDQGGAQDDHVLEEEAQPAPPTQVRAMIQRDHPVDQILGDISKGVTTRSRLVNFCEHNSFVSSIEPFRVEEALLD
PDWVLAMQEELNNFKRNEVWTLVPRPKQNVVGTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESI
RILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFK
VGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQ
DLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRI
LRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQ
LLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDE
KTFCRLRSELNVLDSRNLD
>POPCOP2#LTR/Copia 570-5601 via tfasty with RIRE1_1303-5256, 2 frameshifts and 1 stopcodon. [Populus trichocarpa]
MAASKSIIADLNHGDKLSEKNYDVWHRKIEYLLEEQEMLETITQPMAEPEQGNTAQHRLDMEAYQTYKRKDRVARILMLS
SMRNDIMLRFERHRSAQSVWDAVKIQYGGTSTTRLRQLTLKFDGYKKRQNQTMRQHLTVMSNMISELRGVGHEMTDEQQV
QAVIRSLPSNWEHMRVNLTHNDNIKTFDDVARHVELEEDRLHAEKPINEAFISETKMRGAYGSKYKKGKAKGPKYGKRGI
EASSSGHKRKRGKRGGKKDKNMNCFNCGKPGHFARNCTEPKECLTTIIPLTYTLAVVxCLLNLFPFWTIDSGATDHIARD
RTTFVEFRRIPKGSRYIYMGNNASAAVLGIGTCKLDLRGGRTLYLHDVLYAPEVRRNLVSVLALLQLGFNIAFVGCCVKI
HLDNIFYGSGFVLNGFMVLDTVNVSINYDASIYVVQNSSTINDSNIITWHARLGHIGQDRLHRLARAGLLGSLTKEELPV
CEHCLAGKATRLPFGKAKRASSPLQLIHSDICGPMNVRARHGGNYFITFIDDFTRFGHVYLISHKSEALDCFIRYTNLVE
NKLSTKIKALRTDRGREYLSEQFKNFCDEKGIARQLTIPYTPQQNGVAERRNRTLFDMVRSMMAQANLPISFWGDALLTA
AYILNRVPSKSVSSTPYELWNGVKPNLGYFHPWGCATYIHNTSHEYGKLGPRGKKCIFIRYSEHSKGFVFIGEKANGRVT
EIESRDVVFLEKVFPKTGEVEKDFQLYEMENLDYGATSHSVEDLDETFNPPRNSGSDILSIPTLMEQDHEQSQPRRSIRE
PIPRRRFEIEGEAFMIAPQDDEEPKTFSHALSGPKAREWIKAMEEEMESMKINQVWDLVDLPSGRRSIGNKWVLKIKRKA
DGSIERYKARLVAKGYTQEEGIDYEDTFSPVVRITSVRLILAIVAHMDLELYQMDVRTAFLNGELNEEIYMDQPLGFETK
GQERKVCKLKRSIYGLKQASRQWNVKFHQAILKDGFTMMEEDHCVYLKCSNNSFIILSLYVDDILIAGNNKEMIDTTKKW
LSSNFEMKDMGEASYVLGVKIIRDRAKRLLGLTQETYIKKMLERYHMQDCKPMDTFVDKSLSLSCDMCPKTLEEKEKMSR
VPYASAVGSLMYAMMCTRPDICYAVGLVSRYQSNPGQKHWMTVKSILRYLKGTSNYMLCYQGKKDLRLIGFSDADWGGDV
DQSKSTSGCAFLLNDSAILWRSKKQSCIALSTMEAEYVACSAATQDAVWLKNFLYHLKIVKSASDPVTIYCDNTAAIAVA
KDPKYHGKTKHIKMRYHYIREAITEQDVILKHISTNSMVADPLTKPIARDAFVRHVRSLGLCRM
>PCretro3#LTR/Copia 178-4194 [Phanerochaete chrysosporium]
MSDAPHTVRIEPLKGSENYFSWSIQEKDILTELDLLEYATGETTCPEGTAATAWKRKDRKAISAIRLRCSPAVAIHITSC
ETAKSAWDTLKNMYATQGTMAKVTLVRRLQKYEMSEGADMEDELRKLTEMRAEAAEAGGKITDEDFAFNILSALPPSWES
FVAAQNNVEKSSDVIGRVLSENLRRQSKGDTTTALVARNGKPGKKPKKSKFLKGVFCHGCGKEGHLKNVCRSSNQGSGAG
GNTSRAHLAESREASNDSYSFVATTLAYASTPGTECWLGDSASERHIVRDRAAFKNLTPTPGHTIVGVGSTAALGQGDVD
VVFTTPKGKITATLRNCLWSPNLPHNLLALGRLTSAGMSFHGTGNLLHIKDRDRVIAVGHKMGQLYRMDMTSRSSSGHTP
APSTLAFAARNSARTWYEWHCALGHINATQLQEMYRKGLVEGMDVDTSSDPGFVCDACIQAKHSRAPFPEIASGTVDQVA
DLIYSDIWGPARVASLQGNVYAITFTDAKSRFVAVDFMKTRDAALDRFQKVEQLIERQLGRRVKVLHVDNAKEYTEGKFR
AYAESRGIIIRTTAPYSPAQNGVAERLNRTLMERARAMLIARSLPKFLWQEAWAYACYLRNRTPTRALSGKTPYEALWGQ
KPDVRAARDFGTPCWVLVPENRRDKLAAKSERYIFTGISASSAGWRYYVPGLRQVLVSRDVIFERERESPSVPFTLEGES
ETAPEPSPAAGATPPPPTSQAPETSTSESVKASPSTPNKPEDAAWAHFKSQLRNVTIRPTRQKTRIDYRALHETGTRIPK
PPSEDDDSDPSPDQYHSAQAYFCYAAMDSDHPRSVDECKTRDDWPQWKAAMDAEMAQLEANGTWKKGELPPGRKAIGSKW
VFAIKRHQDGSIDKYKARLVAQGFSQIAGQDYFDTFSPVVRQETFRVATALAATENLDSDALDIVGAYLHGPLEEEIYMR
QAPGYDDGSGQVYVLIKALYGLKQAGRVWNHLLNHVLTSLMGWTRSEADPCLYFKHEGKLNMALVHVDDTALYGERSILD
RFKADVAKHFAITTNGTLSSFVGLQVTRKNGAISILQTRYLETILERFGMQDCKPVSTPLDPGVKLEPTPEDQTPADVPY
AAAIGSLMYAATGTRPDIAFAVQTLSQFTSRPSATHWTAVKHVFRYLKGTTDVGLTFARRADDDITGYSDADWAQAHDRR
SVSGYAYLLAGGIVSWNSKKQPTVALSTMEAEYIALSHAAKEAVWLRRLLTELGFPPGAPTVLHTDNQAAISFAHDTQFH
ARSKHIDIRHHFIRERITDGDIKVIHCASADNIADMFTKALPRPKHRAALALANMATR
>GmCopia11#LTR/Copia 33-4079  [Glycine max]
MANGGFPFQMPMLTKNNYDNWSIKMKALLGAQDVWDIVENGFEEQDEASLSQGVKETLKESRKRDKKALFLIYQSVDEDT
FEKISNATTAKEAWDKLQTCNKGVEQVKKIRLQTLRGDFERLFMEESESISDYFSRVLAVVNQLKRNGEDVDEVKVMEKI
LRTLNPSFDFIVTNIEENKDLKTMTIEQLMGSLQAYEEKQKRKIKQKEATEQLLQLNVKEANYANYKSQRGRGRGQDRGR
GRGHGGEGRGGYNNHSNKFNNGERSWNPQVTRGRGRGNSWSRYDKSQIKCFNCNKIGHYASECRFSKKVEEKANFVEEKG
GEEETLLLACQNKFEEKRNKWYLDTGASNHMCGDKSMFVEINEAATGDVSFGDDSKIPVKGKGKILIRLKNGSHQFISNV
YYVPNMKNNILSLGQLLEKGYDIHLKEHSLFLRDCRHNLIAKVPMSKNRMFLLNIQNDVAKCLKACYTDSSWLWHLRFGH
LNFDGLERLAKKEMVRGLPSINHPDQLCEGCLIGKQFRKSFPKESTTRATKPLELIHTDVCGPIKPNSFGKNKYFLLFID
DYSRKTWVYFLKEKSEVFENFKKFKALVEKESGLSIKAMRSDRGGEFTSNKFNKYCEDHGIRRPLTVPRSPQQNGVAERK
NXTILNMVRSMLKSKKMPKEFWAEAVACAVYLTNRSPTRSVHEKTPQEAWSGRKPGISHLKVFGSIAYTHVPDEKRTKLD
DKSEKYVFVGYDSRSKGYKLYNPNSRKIVISRDVEFDEEDCWDWSVQEDKYDFLPYFEEDDEIEQPIIEEHITPPASPTP
RLDETSSSERTPRLRSIEEIYEVTKNLNDINLFCLFGDCEPLSYQEAAENIKWKDAMDEEIKSITKNDTWELTTLPRGHK
AIGVRWVYKAKKNAKGXVERYKARLVAKGYSQRQGIDYDEVFAPVARLETIRLIISLAAQNKWKIYQMDVKSAFLNGFLE
EEVYIEQPLGYEVKGQEEKVLKLKKALYGLKQAPRAWNVRIDKYFQDKNFIKCPYEHALYIKAQSGDILIVCLYVDDLIF
TGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKEVLKKFKMDDANPVGTPMECGSKLSKHEK
GENVDPTLYKSLVGSLRYLTCTRPDILYAVGVVSRYMEAPTTTHFKAAKRILRYIKGTTNFGLHYYSSDNYNIVGYSDSD
WSGDLDDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMPQEEPMEICVDNKSAL
ALAKNPVFHERSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADIFTKPLKLETFVKLRSMLGVTNQV
>Copia-117_SB#LTR/Copia 37-4455 via tfasty with Copia-26_SB, 3 stopcodons. [Sorghum bicolor]
MAFPHLASSSNAHVAPSFGFSVTEKLARNNYPLWKLQVSSALKGAQVASFIQPDAEPPTPFLKTEEGVDKKEVDKTNPEY
ETWVAKDQSVLCFVLGSLSKEISAQIPTTLATAKEAWAAIESMFASQSRARVISTRMALATATKGTSSIVEYYQKIKTLA
DQMASAGKKLEDEELISNILTGLGEEYDSVVSAVASRVEPISLGELYTQLTSFESRMEMRNGGGQQSAANMVAKGGRNSH
PRGGGRGGDSGRGGFGRGFKSGRGGGRPQGSTFLTGVFCQLCQKEGHTVVKCFKRFNVNFNGPPPKSASTATTNSYGVDS
NWYMDTGATDHITSDLERLTVRDKYHGGDQVHAANGSGMKITYIGDSILHSPSTDIHLKNILHVPKANKNLASVHRLTRD
NGVFLEFHPNYFDIKEEETRRILLRGKCEGGLYPLRSSASNKSSPNKRALSAARPSVSLWHNRLGHASTPVVRHILSRHK
LSFVKSQNKDHVCNACQQGKAHQLPYARSSSVSSRPLDLIFSDVWGPAPASVGRHKFYVSFIDDHSKFVWIYMLRHKSEV
FQCFHDFxSLVERQFERKILAVQTDWGGEYQALNSFFKRIGISHHVSCPHAHQQNGSAERKHRHIVEIGLTLLSHSSMPL
KFWDEAFSTAVYLINRLPSKVINNDTPFLRLFGKHPDYSSLRTFGCACWPNLRPYNTRKLEFRSKPCVFLGYSTLHKGFK
CLDPAEGRVYVSRDVVFDEQVFPFASMHPNAGAQLRAELQLLPDILLNPTYGSGNLLDPNVRSSVPTNASQGLSGDVLNA
GENLEGNNAGTGAPDGDQGEIGTSYHMCSPVGGTTTGGRSQVDLPGxETAAVSGSTSTAGAQSTATGSSAPISPAATQAH
ESAGPHSDPRMGDVSSVGDQAGSAVTAQSSGVSVTAQSSGESLDSEVPAVSRPVTRLQHGISKPKIYTDGTVRWCNQVVI
NPEEPVSIVEAMNDPKWAAAMDSEHQALLRNKTWRLVPRPxGKNVIGCKWVYKVKRKSDGTVERYKARLVAKGFKQRYGI
DYEDTFSPVVKAATIRLILSIAATHGWTLRQLDVQNAFLHGLLDEEVYMDQPPGYADNSHPTYVCKLDKAIYGLKQAPRA
WYARLCGKLVSLGFVPSKADTSLFYLNKGGYTVFVLVYVDDIIVASSSDEVAKTLLSDLQKDFALKDLGDLHYFLGMEVK
RDKDGLTLSQTRYAKDILARSGMSKCKPVDTPLPSTQKLNIEDGTKLGAEDSTRYRSVVGALQYLTLTRPDISFSVNKAC
QFLHEPTTVHFSMVKRILRYISGTIHLGLRIRKSRTMIVSAFSDADWAGCVDDRRSTGGFAVFLGDNLVSWTARKQATVS
RSSTEAEYKALANATSEMMWIQKLLTELQVPHPKAARLWCDNLGAKYLSANPIFHARTKHIEIDFHFVRERVAQKLLDIR
FISTNDQVADGFTKALPVQKLVMFRSNLNLVGG
>Copia-114_AA#LTR/Copia 8-3979  [Aedes aegypti]
MGTTQKELAHGIPQFRGNGSEFQNWSYRVKLFIEAAGVSVVLTGEAPEVEADRAKFVEMDRKAKSLLVSFISDECLEVVR
EKATAKEMWESLEATYAKKSVASQTLIRKQLARLRMKEGNGMRSHLVEFDGLVRKLKTAGATLAEGDLVSQLFLTLPDSY
DPLVTALENVSEEDLTLDLVKQRLLAEESKRSDRQEDASEDKPAAFSGSSQRKFDGKCHKCGMRGHMKKDCKQRGQDDGH
SNGARGNAHSNGRGKREANCVKRSAVSFMADASLSKRDRTNTVAFKLDSGCSDHLVSQKSFFSSFETLVRPIEIKVAKEG
QEMVARTIGKIDATSNKGVLFNMKDVLFVPDLRENLMSVKKLARAGIDVVFSDNKALLKKRGEILATGKLVGSLYEIVLT
LENVCANVCETDPGTLWHRRLGHISQHGMDTMLREGMLQGIKKLPTVGFCEACVQGKQCREPFNGTRSHASRPLERIHSD
VCGPIDPTAWDGSKYIVSFIDDYTHFAMIYLLKKKSDVFEKFREYEATVSAAFGLQISKITVDQGREYCSNAQKQYYKRK
GIQIESTVAYTPQQNGVAERFNRTLVERIRAVLIDSGVPKYLWSEAALACVYLLNRSPTVALPVGVSPAERWFGSKPSLD
KLRVFGCRCFAWIPNQQRKKLDPKSREMIMIGYAPNGYRLWDMQARKVRIARDVKFDEDTFPYAQLKPVDDVPLVVNFPF
EQEGEXSADEDLGIVPNEAESDSGGDEAAGGTIEDGDISTDYEDSADALPSQIERHETPSEPVSRRSERERRLPGKLFDY
FVNYRATSGESISTDVPMRYDDIMQRDDRQQWLGAVKDELHSMAANNVWRFVKCPDGVKPLKAKWVFRVKDDVNGNPVRY
KARLVAKGFLQKAGLDYEETFAPVAKLATIRTILAAGVHQGFSFHHMDVKTAFLYGELKENIYMAVPDGVKAPSNTVCQL
LKSLYGLKQSPRCWNEKFNEQLLKLGFTRSRHDYCLYTRIQDGDEIYIVLYVDDLLICGRNPMTILKLKRQLTTMFAMTD
CGEVSHFLGMRLDYDVRRGSLRLTQEANVDKLLARFDMVDCNPVKTPMEKGIQLTRTGEPTDRPYRELLGSLMYVMLCTR
PDICYSVGFLGRFQQKPTTQHWQSLKRVVRFIKGTKTKCLEYKRTESAEPLVGYVDADWASDVEDRKSVSGFIFLVFGNL
VSWSSKKQTTVATSSSEAEYIALSSAVSEAVWLSGILDDLKLKSSNIPVTIYEDNQGCIGMAKNCESKRSKHIDVRHHFV
RDHISNGSVKIEYVRTEDQLADLFTKPMDASRLGQLGRRLGIAD
>Copia-118_SB#LTR/Copia 50-4388 via tfasty with Copia-20_SB, 2 frameshifts. [Sorghum bicolor]
MSLTGSGDGGRGGGDGSQHQLFPTLTATNYTSWSIRVEAIMEEQGWWEIVEPLEGSSTALTAAETSKDKKVRTHLFQCLS
DDLLMQVAKKKTGREVWQSLKARFVGAERVRDARLQNLKTKFNAMTMKEEETVDEFASRLTTMSVRYSNLGGSLEDSVMV
KKILDTVPERFLQVVAGIEQFCDLKTIPFDEAVGRLKTFEERIKWGARGMRSGEGEVLLTQAEWEARQKKAGGESSGGGR
TQSSGGRGRGRGRGGGRGGHAGRGEAGKENTERRDKSHIKCFKCHGYGHYANRGPGEKKKEEEAHHVQKVGVEPSVLFAE
TVELGLQETTPLTTQSGVTLNLNMVQQELLQIAGDGEPTGEVWYLDNGASNHMSGDRQKFRDIDSSVTGMVRFGDGSGID
IQGIGSIVFQGSSGDQWVLDGVYFIPKLRTNLICLGQLTEIGYRVVLDDDYLTVSEKNPHRLIMCVPRTANRMYKVELRN
VEPNCLLASLENSAWLWHGRLGHVNFQSMKKLVEKEMAGGVPLIQHPDQVCQSCLAAKQTRQPFPQSAKWRADDALELVH
VDLCGPITPVTTGGNKYFMLLVDDCTRWCAVYMLKSKDQAVGAFVEYKAQVENSTGNKIKVVMSDRGGEFLANVFQNVCK
EAGIRQHFTAPYTPQQNGVVERKNRSVMEMARALMKSMSIPGRFWAEAVRLAVYLLNRLPTKPMGDRTPYEAWNGRKPHL
GHLRVFGCTGHVRPGVSHLKKLDDRSLPMVYFGIAEGSKAHRMYNPHTNKIVVSRDVVFEEGVKWSWDAAETEIFSVECD
DEVGHYIPHPNPSEVHVDVAHNDQEVNDSGGAGDAGYQSPAGPQSVSAGVGSNANSDRNPTTGLQTEQTPRSSQQSAWNG
NTMDTDENVDSGDELHRYRSINDVYQRSQVVVLEFDEEEEGAVEVAALLAVMEEPTCFRDAADHPEWVQAMENGMQSICK
NGTWELANLPPGQKPIGLKWVYKLKKNAEGEVVKYKARLVAKGYVQRQGVDFEEVFAPVARLDTIRVILALAANRGWEVH
HLDVKTAFLNDDLEEEVYVAQPEGYVEKGKEKMVLKLSKALYGLRQAPRAWNIKLDKCLKQLGFKKCASEPAVYKRGVGK
TAVILGVYVDDLIVTGEDISEIANFKKQMTTQFEMSDLGKLSYYLGIKVEQGEDCITIRQTSYAKKILEKFGMSDCNSTK
VPMDPGIQMDADKEGVRVDATEYRRVVGCLRYLLHTRPDLSFSVGIASRFMEKPTVKHMRAVKQILRYLSGTLNYGLVYT
QEKKEEVLVGYTDSDVGGDTVGRRSTGGMSFYLNGGLITWCSHKEKRVAISSCEAEFMAATEAAKQAIWLRTLLSELVSQ
KPQRVVLFVDNNSAIALMKNLVFHGRSKHIDIKYHFIRECIEFGEILVKKVGTNEQKADALTKPMPAVKLAVMIHLLGVR
ELSEHQA
>Copia_MT_gagpol#LTR/Copia 100-5335 via tfasty with Copia2_LC_gagpol, 1 frameshift (maybe truly separating gag and pol) [Medicago truncatula]
MSGDEESVTTKYTSVKHDYDTADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAID
RRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKDDESI
EEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSK
SIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKP
GHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAVGLVATVSSEAVSEAESD
SEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKSTLLELKASEEELKGFNLISTTYEDRLKSLC
QKLQEKCDKGSGNKHEIALDDFIMAGIDRSKVASMIYSTYKNKGKGIGYSEEKSKEYSLKSYCDCIKDGLKSTFVPEGTN
AVTAVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQNLIKPESKIPKQKDQKNKAATASEKTIPK
GVKPKVLNDQKPLSIHPKVQGRKSKTSKTNPKGPMKIWVPKSELAKNAGVLKGKRETKSWYLDSGCSRHMTGEKALFLTL
TMKDGGEVKFGGNQTGKIIGTGTIGNSSISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKR
VENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKS
KDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDH
GGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLE
KTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGS
KTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEITPEAESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKH
KSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIG
TKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEV
YVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGST
NASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTV
VDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAG
DRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSK
NPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNMHFVSD
>Copia-142_SB#LTR/Copia 46-3924  [Sorghum bicolor]
MLKPNIFEGTHYKRWRAKCILWLTAMHCYFVAEPRSTGPHTQEEERAWEHADTMFKAAILSVLGDSIVDVYVPLQTGKAM
WEALEAKYGVSDAGTELYIMEQFHDYRMVDDRPVVEQAHEIQALAKELEIFGCVLPDKFVAGCIIAKLPPTWTNFATSLK
HKRQEFGIAELIGSLDVEEKARAKDVRGKKVGDGSSSAHLVQKNHPKPQKKKFQQELKQKPTTAFKKNKKNKEKGNCFTC
GKTGHYARECPEAKWKPPAKKSANTVETDAGTSGYGNLLPTVLSVCHSPDWWIDTGANIHVCADVSLFSTYQAGRASSLL
MGNGARAAVRGVGTVDLKLTSGKTVQLKNVHHVPSIKKNLISGSLLCRDGYKLVFESNKFVLSKYGTFVGKGYESGGLFR
LSLTDTCFNSVNHVSHDVDINIWHSRLCHINFGSMTRLAGLNLIPKFDVIKSSKCHACVEAKQPRKPHKAAAARELAPLN
LIHSDVCEMNGELTKGGKRYFLTFIDDCTRFCYVYLLKTKDEVLHYFKIYKAEVENQLERKIKHLRSDRGGEYFSNEFSE
FCAVHGIIHERTPPYSPQSNGIAERKNRTLTDLVNAMLETAGLSKEWWGEAILTACHVLNRVPTKNKESTPFEEWEKKRL
NLSYLRTWGCLAKVNVPINKKRKLGPKTVDCVFLGYAIHSVGYRFLIINSGVPDVIVGTIMESRDATFFENEFPMKNTPS
TSSHDSIFLPETLEPVIHADEETHDENPEKDNNIVTRKSKRQRVAKSFGEDYIIYLVDDTPTTIAEAYSSLDADLWKEAI
QSEMDSIMSNGTWEVVNRPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDYFDTYSPVARLTTIRVLLSL
AASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGFIAKGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFIVNEADK
CVYYRYGGGDTVILCLYVDDILIFGNNFNVIKEVKDFLSNNFEMKDLGEADVILNIKLLREGNGGVTLVQSHYVEKVLNR
FGYSECTPSPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDTHWHALERVLRYLK
GTISYGIHFTGYPRVLEGYSDANWISDADELYATSGYAFLLGGGAVSWKSCKQTILTKSTMEAELTALDTAGAEAEWLRE
LLMDLPVVEKPIPAISMNCDNQTVIIKVNSSKDNMKSTRHVKRRIKSVRKLRNSGVISLDYVHTSKNLADQFTKGLSRNV
IEGASRELGLRPT
>HERV9_gag#LTR/ERV1 1287-2747 (HERV30 close) [Hominoidea]
MGNTQASTGSPLKCILSHWDQFDPQTLKKRRLIFFCTMAWPQYSLSDGEKWPPEGSINYNTILQLDLFCKREGKWSEIPY
VQAFFSLKENTQLCKACNLHPTGGPLSLPPYPSLPTAPLPINDKPPLISPAQKEISKEISKGPQKPPGYRLCPLQAVGGG
EFGPTRVHVPFSLSDLKQIKADLGKFSDDPDRYIDVLQGLGQTFDLTWRDVMLLLDQTLAFNEKNVALAAAREFGDTWYL
SQVNDRMTAEERDKFPTGQQAIPSMDPHWDLDSDHGDWSRKHLLTCVLEGLRRIRKKPMNYSMMSTITQGKEENPSAFLE
RLREALRKYTPLSPDSLEGQLILKDKFITQSAADIRRKLQKRALGPEQNLEALLNLATSVFYNRDQEEQAQKEKRDQRKA
AALVMALRQTNLGGSERTENGAGQSPGRACYQCGLQGHFKKDCPMRNKLPPRPCPLCRGNHWKAHCPRGQRFSGPEAPNQ
MIQQQD
>HERV1_pol#LTR/ERV1 2658-6308  [Simiiformes]
MVSMVVGGRKTDFMVDTGAEHSVVTQTIGPLSKDYANIIGATGITEKTPFFKSKRCMIGDQEVQHKFLYLPNCPVPLLGR
DLLQKLQAQISFTPSGDMTLSLGQKKAMVLTLTVPKAEEWRLYESSCQECGKGYSVAEREKLFTDLLLKLPGVWAEDNPP
GLAVNQAPVIVELLRGTYPVRIRQYPIPIEAXQGIAKHLKWLLEFGIIERCVSSWNTPLLPVLKPSGDYQPVQDLRAVNE
VAATLHAIVPNPYTMLGQIPASAAWFTCLDIKDAFFCIRLAPISRDIFAFEWGPSQYTWTRLPQGFKNSPTIFEEALASD
LKAFTPPSDRCVLLQYIDDLLLAAPTRKECIQGTESLLRVLWEAGYKVSKEKAQICGQGVQYLGFYVSQGRRELGRERKE
TVCSIPQPDTRRQVREFLGAAGFCRIWIPNYSLLAKPLYEATKXGEKEPLLWGKEQDMAFKEIKKALIQAPALGLPDMTK
PFYLYVHERKEMATGVLVQMLGSWYRPVAYLSKQLDLVATGWPPCFKALAATALLAEDANKLTFGQKLIIQVPHTVVTLM
EQRGHRWLSNPRMLRYQGLLCENPYITLETVNTLNPATLLPIECAEHGKPPLCAPGYHCCVETVDEVFSSREDLKDQPLK
DPDVEYFTDGSSFISEGIRKARYAVVTLSSVAEARPLPVGTSAQKAELIALTRALLLAKGKSVNIYTDSRYAFATLHAHG
AIYKERGLLTTEGKEIKNKKEIEQLLEAVWAPKEVAVIHCKGHQTGGSDEATGNRKADKEAKRAAMTEXTKKEETYAMPL
LEPPLAXTPNYSSSEKAWFAQENGSYQKGGWWKFSDGRLAIPEAIAPRFIKQFHQGTHMGKTALEILVGRYFXVPRLTAI
TRAICEQCVTCAQNNPRQGPTRPPGIQETGAVPCENLLVDFTELPQAGGYRYMLVFVCTFSGWVEAFPTRTEKAREVTRI
LLKDIIPRFGLPLTLGSDNGPAFVAEVVQQLTQMLKIKWKLHTAYHPQSSGKVERMNRTLKQLLKKFCQETHLRWDQVLP
MVLLRVRCTPTKLTGYSPYEIVYGRPPPLISQVKGDLKEIGELTLRRQMQALGEVMQEVQGWVRERIPVSLTDAIHPFQP
GDSVWVKRWNPTTLGPLWDGPHIVIMSTPTAVKVAGITPWIHHSRLKPAASVQDRWTSQQDPDHPTRLILQRNQGAAEKD
DCPAPTTPEAGRSTHG
>HERV-Fc2_pol#LTR/ERV1 1830-5523 via tfasty with HERVFH21_pol, 1 frameshift and 1 stopcodon. [Hominidae]
MGHWKSECPSVGASTVPLRCENSETTGGAFQLLSVDDDRRGPDSGTPLTLAEPRVTLQVAGKSISFLVHMGATYSVLPSF
GGPSFPSPVTVVGIDGTPSTHRQTPPLSCRLDDTLISHSFLIIPSCPVPLFGRDLLSKLGASIRLRPSLPSSAISLLPLL
ALSDDTPSPIPSLPVPVDPIVWDISTPSIARHHAPIMIKLKDPTKFPSRPQFPISVEHRQGLKPIITRLLQQHILIPVNS
RCNTPILPIRKASGAYRLVQDLRIINEAVVPIFPVVPNPYTLLSRIPPTTTHFTVLDLKDDFFTIPLHPDCYFLFAFTWE
DPDTHVSSQLAWTVLPQGFRDSPHLFGQALAKDLSTCTLADSTLLLYVDDLLLCSPSLSVSQQDTATILNFLGKQGYRVT
PHKVQLCTPTVTYLGISLTATTKSLTTDRVSLIKDLQLPQDADKILSFVGLVGFFRHWIPNFGVLAKPLYQAAKETPTGP
LSDPALVARHFRRLQQCLLTAPVLSLPNPLRPFHLYTDELQGVATGLLGQPVGPTYQVVAYLSRQLDPSTRGWQPCLRAL
AAAAELTKEALKLTLNHPLTVYSPHRLTDVLSHKCLAHLAPSRIQLFHVLFVENPDITLTASPPLNPATLLPIEASEPSP
VLSHSCPELLTSIPNSRLGLFDRPLSNPDSTLFVDGSSVLTPCGRRQAAYAVVTHDKTVEAAALPLGTTSQKAELLALTR
ALLLSQGQRVNIYTDSKYAYSIARTHSVLWQERGFLTMKGTSIVNGPLIHKPLNALQAPREVAIIHCKSHQHSKDPVAQG
NNLADSTAKSLALTSAPAPAPAMFPSGSRTPAYSPQETFHLISNLKGMTDQDGxIWVDNRIALPESQAQAIITDVHKTLL
IGPKLLYQFLEPIFLCPALQSLIHQVHQACAVCSTVNTQGGLRRPGPHHQLRGHQPGEDWQLDFTHMPRHKHYRYLLTLV
DTFTGWIEAFPTARETGEVAVSVLLEHIIPRFGLPRSLQSDNGPAFVSKITQQVSESLRVTWKLHIPYRPQSSGKVERAN
SLLKEHLTKLTLETKLSWVTLLPSALTRLRAAPRGPTGLSPFELLYGRPFLLPGLPPTVSPPPLASYLPYLTLLRDLLRK
HADACLPEPTPSSPDAPVVLSPGDSVLLKELQPKTLTPRWSGPYTVILTTPTAAKLLGLPSWYHLSQLKKAPTQHDWSSK
LTPTRLRITHGQTFPTMPPTPPDPPTPHSAQ
>HERVFH19_env#LTR/ERV1 5983-7668 [Primates]
SAPYCSMGPMASRNFPGLYSYPNNLFLFLLVSFNINSLITSTSPIQPLLTALKLERSINLTQSLLLQANSSFAPECWMCL
SLSSSAYTALPTPLHDLLTGNITLIYKLQKGASFFERADTLVGDYPTSRANQANKLFQTYYNSLQRLKPQGPPIEGPITK
HTPLLQQASLCFSASEGNFPVGSLTPNQCNRTIIIKHPSDHQTNQVDYQVSPEANGAFLQLARFTASPSTNASGLTCAVP
GAHLFPWLNINGATSDRIKCVKNNSSYISTIVGVSLASSLSIWSNEPQERKNTPSLIHLFSFHISACIYDKGLFFLCGTN
TYLCLPTNRTGTCTLVYLSPSIGLVPPNQPLPVPSVQYVRKRRAIHVIPLMAALGITSGLGLGAGRLATSLTYFKALSTE
LQGSLEDIARSLIRVQDQLDSLAGAVLQNRRGLDLITAEKGGLCLSLGEECCFYLNQSGLVRDAAEKLKERAKKLREYQN
NQIDSWFGNKIIAWVIPFLGPLLIICLGLMFLPCLINLFQRFLTDRIMAISQTTTQKHLQTALLLQSIRDQRTLRPPLSR
K
>HERVE_env#LTR/ERV1 5738-7750 via tfasty with HERV3_env, 1 stopcodon.  [Primates]
MQKLIMGFIFLKFWTYTVRASTDLTQTGDCSQCIHQVTEVGQQIKTMFLFYSYYKCIGTLKETCLYNATQYNVCSPGNDR
PDVCYNPSEPPATTIFEIRIRTGLFLGDTSKIITRTEEKEIPKQITLRFDACAAINSKKLGIGCDSLNWERSYRIKNKYV
CHESGVCENCAYWPCVIWATWKKNKKDPVYLQKGEANPSCAAGHCNPLELIITNPLDPHWKKGERVTLGIDGTGLNPQVA
ILIRGEVHKCSPKPVFQTFYKELNLPAPEFPKKTKNLFLQLAENVAHSLNVTSCYVCGGTTIGDRWPWEARELVPTDPAP
DIIPVQKTQASNFWVLKTSIIGQYCIAREGKDFIIPVGKLNCIGQKLYNSTTKTITWWGINHTEKNPFSKFSKLKTAWAH
PESHQDWMAPAGLYWICGHRAYIRLPNKxAGSCVIGTIKSSFFLLPIKTGETLGFPVYASREKRGIVIGNWKDNEWRPER
IIQYYGPATWAQDGSWGYRTPIYMLNRIIRLQAILEIITNETGRALTVLARQETQTRNAIYQNRLALDYLLAAEGGVCGK
FNLTNYCLQIDDQGQVVENIVRDMAKVAHVPVQVWHKFNPESLFGKWFPAIGGFKTLIVGVLLVIGTCLLLPCVLPLLFQ
MIKYFVVTLVHQKTSAHVYYTNHYRSISQRD
>GALV_gag#LTR/ERV1 gi|74543|pir||FOLJGL gag polyprotein - [Gibbon ape leukemia virus]
MGQDNSTPISLTLNHWRDVRTRAHNLSVEIKKGKWQTFCSSEWPTFGVGWPPEGTFNLSVIFAVKKIVFQENGGHPDQVP
YIVVWQDLAQNPPPWVPASAKVAVVSDTRRPVAGRPSAPPRPPIYPATDDLLLLSEPTPPPYPAALPPPLAPQAIGPPSG
QMPDSSDPEGPAAGTRSRRARSPADNSGPDSTVILPLRAIGPPAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPAGLT
GLLESLMFSHQPTWDDCQQLLQILFTTEERERILLEARKNVLGDNGAPTQLENLINEAFPLNRPHWDYNTAAGRERLLVY
RRTLVAGLKGAARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEGQQAAVAMAFIGQSAPDIKKKLQRLE
GLQDYSLQDLVKEAEKVYHKRETEEERQEREKKEAEEKERRRDRPKKKNLTKILAAVVSREGSTGRQTGNLSNQAKKTPR
DGRPPLDKDQCAYCKEKGHWARECPRKKHVREAKVLALDN
>ERV27_MD_env#LTR/ERV1 5739-7569 via tfasty with MDEV_env, 2 frameshifts and 1 stopcodon.  [Didelphidae]
MLWVILLPLVTAYQPHQASFNXHQPWKWTIHNWAWPTPLATNTTTGWVELAATPCDLVWGPQGLRNPSTPCRNEGIFYLC
PAANPGKSYCNAPNQYYCQYWGCETIVTGGSQIEGCGWWTVTPDPWLSITWGPPGCKHLCYVADTGTPCDQLIFSPIQPD
HDSWLQGRTWGIRLYREGTDPGGLFVIKKEPVPSLPTAVIGPNSALLPLPPAKLPSPTPTPGNQTTPTTTPAPSVAVTNA
TTPAPRPSASLWPLIEASYEALNRTSPNLTASCWLCLDSRPPYYEAIALNTSFNSSQEDSPQGCNWSDRKVGLTMPISGQ
GICVGNFSHGSHWCLNNSPPPSSKWYIPPSGAYWACTSSGLTPCVSSATLSQDPELCILVTILPRVLYHPGTELLDYWEH
LRISCQKWERCPCLTLATLLSLAGIGTGTASLFQTADLRHLHTAIDADLRDIEKSLDALEKSLSSLSEVVLQNRRGLDLL
FLKEGGLCVTLKEECCIYTDHTGVVRESLAELKRSLDAxERECTHAQPWYQQAFANSPWLTTLISTIAGPMLILFFLITF
GPCIVHRLVHFVKDQVHTVQLMVLRQQYQALTAPPMATLMPCPWRXRLAPE
>ERV25_MD_pol#LTR/ERV1 2687-6550 [Didelphinae]
MQGDCLTQHSEAVTLXPDADSQAENXRGDNQTIKISQKGVENXXLIEGEPDLSTEYTELQHINGQELVQDLGKIEQLNAM
VPVLQEHHTQEPYVWIKVGEQDYKALIDTGATRSVLKSFPGDSTIXGSVTVAGATGEIQRVPKLEPKMVKLGPLSIDHTF
LLIPGCPDNLLGRDFLCKIGATIHCERSGKIYLHLPKQSLKHYPLLFLGQLDETPDQLHTETPMFDIPKDIPQGIWATHP
NDVGRIKSATPVKIEVKEGTPPKIPQYKLSKEAIEGITPIINSLLEQGILRPTISEFNSPILAIKKNKKNPDGXISWRFV
QDLRVINDFIKKTYTITPSPSAIISEIPSTANWYTVVDLANAYFTVPLHPXSQNIFAFRWGDHKLCWTRLVQGCCESASI
FCQLLKRDLESIKFKHSKIVHYVDDLLLASPNAKTCLQDSKTLLIELYKRGHKVSKKKLQWVSPRVEYLGFILEKGTRKI
SNKRIADIQKLGIPRTKRQLRAFLGICGFSRQWVIGYSNISKCLTDLTKNEVEEPLQLTKEHLHALSQPKQAILSAPALG
IPDYSKDFHLFVHEAKGIASGVLAQNFGLQMRPMAYYSTILDPVAQGMVHCLRSIAAAAXMVKKANDLVLGCRLHVHSAH
QIEKLLKMSDMQAFTPARLSQYEVILLGNENLSLHRCAPLNPATLIPDLPLGEEPLHDCTQIIDIVQKSRHDLKDTPLIN
PDLELFSDGSSYIHGGKRVTGASVVTQDETLWHASLPSHVSAQGAELKALTMALILGKDKRINIFCDSQYAFSILNGIGD
IWKNRGFITTAGKKIAYGRLISQLLEAVLLPREVAVMHCRAHSFGKDKISQGNNRADITAKYAARFGPMHVLNFSLVEKH
DITQAYNEGEVQSWKQQLGAKLVNGIWIAEGGKPILPKILYQHLCNVIHSRGHYGVMALLDEINRFWVAPGISTHAIRVR
QACDLCRRYNQGHFKSKALGGRPLAFTPFECLQIDYINTPSDRGYKYALVIVDRLTQWTEAYPAKKNNTAFVVKTLLKEI
IPRYGIPNSIDSDRGTHFTXKILQEIHQNLGIKGNLHAIYHPESSGQVERMNRELKTAVGKLCAQTHLKWTEVLPLALFH
LRTKPRGDLHISPYEILFGQPLWHGRTAKPSYISMLGGECQLHTYLTEIQDRLKELRSLGLLAQRVPLDFSLHNISPGDM
VYVKNFTRSTPTEPKWNGPFQVAITTPTSIKIIGKEPWXHASRVKHHFASTSPEEIEPEIAPDHTQDAQTQRESDQDEDT
QNKPHRK
>ERV42_MD_gag#LTR/ERV1 178-1791 via tfasty with MdoLTR3_gag, 4 frameshifts and 2 stopcodons.  [Didelphinae]
MYQKVIWTTLVLVMLAHWYYSIFGTITTMFNDFIGAAMNITKYWDQIKLDINLWPTFPAVYGSVMMVWQFYTTIRKGLKI
ILGKGDINNLDNRLDKVFSQMAAITDMYQDFMAKMEKLGMGKDPMTETNSNNDKDKNKDTETVTTTALTVGICTEKIMVD
KQTNTEAMQTEGAAEAQKIMPLRDFAKFTQDSVLHMKVHKSFTAQDLETLKKRMPRFCTEPYKCLHELKxAFKLFEPSFE
DVEILLSELFSPQEQAQFLKKRxEKTSLTSWPEFHVDMEFSWPQNLTYLRKVIKSFCICPNAWGKFERIRQEQKEHPSVY
LNRLMENAEAILGFPQESEEVIPHVKRQFLKGCIATLRNFYKHFCPQFESLSLQELRDSATYLHDNTHTEQQKEKEDLKQ
KLEETKETLRQKEIEEVKNLATIRTFPQQRPQYQQRGQGDTRKCFLCHRIGHIVKFCPMKSQYEQNNKRPQYNNCYNQNR
NNNREQAYYNPGKPKCCDHCELKNQNVPDLKTMQRLISEGTKPKYLAVLSKGNSQYTA
>ERV-1_Crp-I_1p#LTR/ERV1 359..5773[Crocodylidae]
MEMSGKTPLAACLRQEKPCRLERWVMKKGKCPWEKGCFKGENPLTEAGLSFEQYCTTLKPHSSAKDAAAAWALFYACLEM
IEMLKGKQELELEKEQLQQRLKDCEISGCDFVAEKLKLVTLLRDIQEDRDKASKTLELYKKELTHTKVLLEEARAATRFL
AEENKAAKTAASHQKCEAEISKLHAQLSAHKGVVAAVRLREDCDFESPGKVEILPDAVPKSPFNPDWPHVHNVAPVTTKE
VKRLVAGDDLPTTEIVTDIVRWSPSQAKAIAERLGPLNRDTAIAWLARVWQMYPSADGIDLTQLAQLCASPCDADALDMG
IGSWERTAPGPREWMISALKILLPASSLKKLYVMEEQKPGEAPESYLIRKKMLAALSDSLPQTEENGVITLQYQGPELIQ
STYAGLNSQTKMTIGVVDLEHITWNELVAKIKQAGDLLRETGVLKRQAGKKITSEPVQAITFANNGPHSASHPPNSNPPL
PHNPGQRQPKETLRRMIWKELVNLGEDMGKYDRQPISVLINALSQAIRRAELMQGAPPQPTAPVQSASHAPAPCQRQTPA
SSPEWRLQRESADQQGCPVLLGPPQLVARLQCDVWGRPTVRATVGNPGMLAQLLVDTGSSVNILSPRWISGGRPTTKHVQ
LSGYGGEIQEAPVWQDVPLQIDRLQGKVECCAHEGNEKGILGVPFLQAFQLTVDLANGVLWKLKGGPAEVSAVHRCAAIK
APTATLTSVSDPWVQEFPSLWTKHKAECGKINAEVLIEGKDPPPQRQYKYPAAAEEGIKDTIDCLLEQGVLVPMQSICNS
PVWPVLKADGVTYRMTIDFRALNAATPAAAPVVAKYNEILAAVAAGSKWFSVIDLANAFMAIPLHPSCWYKFAFTYRGQQ
YAFSRTPQGFHSSPSICHAHVTKMWNRLSPKHHSHVISYVDDILIHTPTSEMNREITKEVLTIVQETGFKVNREKAQLVQ
QQVKYLGVCLGEDGRTPDQQRVETVGKLPAPTDAHSLRALLGTFNFSREFIEMFSDKAKPLYKLLKKNRIWEWGADQQTA
LATLKQDLACAPALVXPDPVLPFVIQLASSETSIGATLSQKQCDKLRVIAYASRLLNQTEQGFTPCEKECLALVWSLAHW
EFIIGGSKVIVQTVHSPLKYIISGKIQDGQVSNPRIAQWTLTLVNRGVEFKKEQAVSPAPYGLIIEGEEHTCPLPLLKHL
EWPVKGGKRLADAQQKGFVIWFTDGSSFYHKGHPQTGYGAIRINDGEVLQGPARPHSAQAAEVEAVKAILAYESRDTSVA
IYTDSDWTARAITVWLPLWLDREMVAADGRPISHSDKWRQIADLIRERTGDTWVTHTKGHQKNHSEEAHWNNKADTLAKA
AATSNHTEDTDQVKKIXAVTTRRQTLGKGIDTLDLSTLQDGDTEIQSLAKAGKDLTGKYKIEQFDNVWWAVNTDGQRHWV
IPSQVRGDLIQFVHEQGHKGKQXTLNRIKDTGWWPGMKADVDQWCDNCLQCAMVNADRQVQKNALGHQRIEGPWSWIQID
YIGPLPTTSRGNKYCLVIVDPFSKWVEAIPTKTNTASVTAKQLFNIVFSRMGIPRVIDSDLGSHFVGDVMQELRKALGIK
QRFHIAGHPESSGQVERTNRTLKEALRKQVKSSGKDWDEKLPIILMALRGSKAIHGYAPFEVMTGRHXRMPESWWLGVEL
PSAWEGKVVADEWVQTLVETIAALHKQVATQLGIVQQNTDKKLGWGKPPLIWEIGQPVMYRKFSAKEHSLTHTWDGPCFI
VNRASPNVYQVEILNGKGRKPWRKWFHSSQLKEWKGKPPDRQGIG
>ERV-1_AMi_gag#LTR/ERV1 6162..7904[Crocodylidae]
MAAGSEAFPLCVWGQGDLRDFIESWVKWNGGPLQGPQESPSSPAWSTARDWAEGILSEKAWKQTFWKAAALQALSWGVQA
LWLECQEQERLCQEKDALICQLKEVVAQQQLFNRASVLAVEIKERDSEDLRSAKREIESLKSLIDKMQVEREALGNAADS
RSVAVPSGKMPPAVTPSAPPFYPSSASPPIPPDPPDYSAEVHAVERVVHLNPPAGGAPXPADQRLMRRSGVALPEGTTQT
QRVRITSPSPMEQEALRAQLGPMPLEWNAWTQWLVKAEKSLALLSSTDLAEILPGLAKGVSPAILGTGEWQARMTDIARK
LFGIYTVDQGASQMRPLPKEHPRDIIERVQAWARVWEDPLAAQWALPPGGEPATGPAVYLTHGYSWPPQNNFTWASKRSQ
SRHSRNWRVAGPNDRYCPKALWNLYRGPGRKSNASASKRTPPGYNRTSAGLGPSMGRSPSCTMGIAPGGGAGNRARRLFD
AWIQLAPPELITMLEMQEGTLQADQLHHYLKRAEAWWRLQQTAQAQQNQGAAESKSQLRRLERMVEDLSAKLVGSPTKPH
AENPSRGEGDRRGNNSKGPRLCRPGDWECPQGVCPAINFPNRVTCFKCGTPRPAPQVLTLTSEPENPPVPLQD
>HERVS71_env#LTR/ERV1 6990-8858 via tfasty with GALV_env, 1 stopcodon.  [Primates]
MGPQAWVRXLKTAPKSGETVRLILFIYFFCLSLPVMSSVPSYSFLLTSFTTGRVFANTTWKAGTSKEVTFAVDLCILFPX
PAHTHEXHHNLPVTGAGSVDLAAGFXHSGSQARCGSSKGAEKGLQNVDFYLCPXNHPDASCRDTXQFFCPDWTCVTLATY
SXGSTRSPTLSISRASHPKSCSKNNCNPLNIIVHEPNSAQWYYGMSWGLRLYIPGFDVGTMFTIQKKILVSxSPPKPIGP
LTDLGDPMFQKRPDKVDLTVPPPFSVPKTQLQRXQLQPSXMSILGGVHXFLNLSQXXLAQDCWLCLKAKPXYXVGLGVEV
ALKGGPLSCHARPRAFTLGDVSGSASCLISTGHDLSISPFQXVCNQSLLTPMRISVSYQAPNXTWLACTSGLTRRXNGTE
PGPLLCVLVHVLPQVYXYSGSEGQLLIAPPELHPRLRRAAPLLXPXLAXLSIAGSAXIGTAALVRGETGLMSLSQQVDAD
LNNLQSAIDILHSQVESLAEVVLQNRRGLDLLFLSQGGLCAALGESCCFYANESGVIKDTLQKVQENLDRRQQERENNXP
WYQSMFNWNXWLTTLITGLAGPXXIXLLSLIFGPCILNWFLNFVKQRIASVKLMYXRTQYNPL
>PABL_B_pol#LTR/ERV1 1992-5570 via tfasty with CarERV2_pol, 2 frameshifts and 8 stopcodons.  [Primates]
ISPQEPRXKLTVGKQKLDFLVDTGASYSVVNTPXTELSDXSVNIVXVSRKLRSEQFLCPLSCKVGNDLITHQFLYVPDCP
IPLLGRDLLCKLxAQIVFNPEKRQMCLQVPPEHGLQLQALLASAEAPRPKVEAVPQEVFDKVKPEVWAxDRPGRAINVSP
VKIKLKEGAQPIRKKKYPLKREALEXIQPVLVQFLQYGLIRPCQSSYNTPILPVVKKPHSHEYRFVQDLRAINDIVEDIH
PTVANPYTMFTSLPGDHEWFTVLDLKDAFFCIPVDVESQLLFAFEWTDPETAXQFQYCWTVLPQGFKNSPXIFGEALAQD
LRSLQLENGVLLQYVDDLLISSPSEQECQDNTIKTLNHLAACGYKVSSKKAQVCKQTVEYLGFLLQKGTRALTVERRNAI
ASIATPTTRKQLRGFLGMXGFCxIWIPNYGLIVKXLYXLLKGADHDPFDWEARHQHSFEQLKCKLSVSPALGLPNPHKPF
QLYVHERLGLALGVLTQRLXEVLQPVXYFSKQLXTVAKGWPPCLRAVAATCLLLKEAEKLTLGQPVTXYVPYQVLVLLEQ
KRGYWLTAGXLGRYQAXXLDDPTVKLQTTGTLNPAXLLPPTGEPEEPMHNCLEVXDQVFSSHLDLKDAALPCADWXLFVD
GSSLVTDRKRNAXYAVVTSSEVTEARTLPAGTXAQKAELIALMRALQLSQGKSANXHTDSKYAFMIVHAHGAIWRERGLL
KADNTEVKYAKQVLELLEAIKAPREIAVMHCPGHQRSNSEVARGNAFADRTARHLASASIESGRPxFPKxIxRPSTPVQS
SEDEKAAEDKGFKLNKEGWRVNSXGLVWVPVHLVYPXLKYIHDSTXFGRDASLAFVQXYSKGKGLKAHLEDIIQRCHLCA
RNEPNNHSRGQPGQQGRGRHPLENWQIDFXQMPXAPGGYKYLLVLVDTFSGWVEAYPCHTExATEVVKVLLKEIIXQYGL
PDVIQSDNGPSFXSEITQQVNKALGIKWKLHSAWRPQSSGQTERMNHTLKTIIAKLCQETQLKRIQVLGIALLRVRIAPR
SGIKXSPYEIVFGRPFXANPSRXTEVPLDRELAIKNYVAHLGQTLNXLHKFASNRSAVNSVEARHPFQPGDQVLLKEWKE
AGPAQQLQEKWKGPYDVLLTTGXALKLADIKPWVHHMxVKRFLPAKNPAAEESPAXRWEAEPLEDLKFLFRKR
>PABL_B_gag#LTR/ERV1 382-1877 via tfasty with CfERV1_gag, 1 frameshift and 5 stopcodons.  [Primates]
VLVFVRNLSPLVCVSVLAFLIHISSKMGSAESVPAGSPLGRILSDWKQXGYPPMTKRKLVYYCNXVWPMYVLESEGRWPI
XGTLSYXTIYXLEPFCXCSGRWEEMPYVXAFMLLHNXDVKEKGDKLMVQHSVKVCPDSQGEKIRTQKANNxxMXLTPxEV
SHLASGSxCPTTELQERGESPPPEYKEXAKLVSPSRTRQGTSXGXGTTEPGAGPISTLTIPCRGxSAGGSGXILLGLQPF
STSDLLNWKNSNXSYREDPQKMTELFTTXFATHRPTWADVQALLNIMLTADERXLVLDKAKEEAXHLHDENPDDTPDPDG
AXPYTDXNWDXNEANXGGMAHLEHYRRCILKGIKSGVPKPKSLNKVQELQQRPNEDXSEFMEHICQXXRKYTDXDPQDPE
NVRMVNXTFIGQSAPDIRKKLQKVEGAVGMNASQLIDIAFKVYXSREXKETKALWQAAILXXTAGGNPRGKGPXKRKGKI
EKDQCXYCWETGHWKKDCP
>PRIMA41_gag#LTR/ERV1 1013-2606 via tfasty with MER66_gag, 3 frameshifts and 5 stopcodons.  [Primates]
MAIQSHGFGSFLSTSSASFMGNTAWIPEDSPLGCILEHWDKFKPNGLKKRKLVVSYNTVWPQITNLEKxEKWSTTRTMAF
NTILPLDLFCKCEGKWDKIQYVQAFLLPSQNKTLQxVCACLMRGKEGKxEKEQTYxMILxCKPPSPPPPTLVQQAVLGGA
EPPSVSSDGSDVLASSSSPSESSVENPLSPPPYPSSPTLYPPLPEELSPVSTTRSGASYQLPKGNLCPLREVANGEEGTV
RVHVPFSMSDLTLCKEKFGHFSEDPGKFIDEFEKLTLTYNLTWQDLHVLLSLCCTVEEKQYILGTARTHADEVLARNPNH
NIYQAGGIAVPDQDPEWNYQRGSEDLGRRDHMVTCLLEGMKKCMKKPVNYEKVKEVSQGKDENPALFQGHLVEAIRKYTN
TDPASREGQTLLGVHFITQSAPDIHRKLQKAAMGPQTPMEQLLDMAFLVFNNKDKAEEAERARRTSHKVQLLAAALSSPP
TWGCPPGSWPEQGKLKGGKPKAGRPSHRALGTNQCAHCKKTGHWKRDFPVF
>RNNICER3_gag#LTR/ERV1 504-2069 RNNICER2 very close [Rattus]
MGQSLTTPLSLTLDHWKDVRDRARDQSVEIKKGKWQTLCTSEWPTYDVGWPVNGTFNKTTILQVKDLIFRQKPYGHPDQV
AYIVTWESLAFSPPPWAEPFVDPNWLPVSPKPVSPSPPDPLVASSSLYPALTKEESPKVPPPKPVLPEDPNSPLIDLLLE
EPPPYPVPTAPPREEEVEPPARPRXEAAPSPVAGRLRGRREVAPDSTSQAFPLRQGAGGQTQYWPFSAADIYNWKQHNPP
FSKDPVALTDLIESVLLTHQPTWDDIQQLLQALLTSEEKQRVLLEARKHVLGDNGRPTLLPEEIDDAFPLTRPDWDFTTA
EGRRHLRLYRQLLLAGLRGAARRPTNLAQVKQVVQEAAETPSAFLERLKEAYRMYTPYDPDDPGQMTNVSMSFIWQAAPD
IRAKLQRLENLQGYTLQDLLKEAERIYNKRETQEEKEDRVRREKDERDRKRSRELSRILAAVVQGQEKRGERVGVRKGPK
LDKDQCAYCKERGHWARDCPKKPSGLRRPRPQTSLLALDED
>RNLTR10_gag#LTR/ERV1 529-2135 via tfasty with PERV-C_gag, 1 frameshift and 1 stopcodon.  [Rattus]
MGQTESTPLNILVNHWREVGERGENLSVVVKKGRLVTLCSSEWPTFRVGWPPVGTFDLQVIKAVKERVFRPGSLGHPDQV
PYIVTWKDLVEDPSPWIKAFLSPRLSQVLAMKEKNPVETNESVKNILQDPSTADLXLMDPPPPYPPTMAPVPMAPPQGSP
LSPHPASLYPPLPPAPARGEGGEGPSEPGPAMGTRSKRATSPDTTVALPLRAYGPIDEDGNQAMQYWPFSSADLYNWKAQ
HPPFSDNPKGLINLFETVLFTHQPTWDDIQQLMRVLFTTEERERIMQEARKNVPSDTGAPSIDQAVIDSGFPLTRPDWDF
NTAGGKEHLKVYHQALLAGLKGAARxPTNLTKVREVKQGPDESPSAFLERLMEAFRQYTPYDPSSEEHKATVTMAFIDQA
SRDIRKKLQRLEGLQDKSLRDLVQVAEKVYHNRETEEEKEQRKRKEEDEREMKKEKRQERNLQRILATVVRESREERLQP
KRDRKPLEKDQCAYCKERGHWARECPNKRKLGAGNPRPWEKRPQTAKVLALGEDSD
>MER84_env#LTR/ERV1 3916-4818 fragment [Primates]
PQTILPAPPGLLRLCGTANNYLNPFQALALSHLDNSLHYGDCTLGTVAPTQITVLNITSDSEFHSRRKRALGLIVARVVG
TIATLAPWGGFTYHEITLRELTASLEIALAKTGASXSALEKSLDSLAGMVFDNRRALDYLLAEQGGVCAVINKTCCTYIN
VSGEVETNVQEIFKQAKWLHTLSQSNQDWAKTFTDWFPKITWLLPFLGPLFLVILLLIFGPCLFNALIKFISSRLQXFHL
QMAMQSQYQPATATSIYMGPLDGIRSSPMNKFFMTLHSLHDREQEREKCNLSLSMPPFSRK
>MacERV2_env#LTR/ERV1 5554-7437 [Cercopithecidae]
DMETPTLRGPAQDKTLSYLAPCLLLALLPCVAGSNNPHRPYNLTWQVTDFSTHEVLDKTSKIAPMGTWFPDLYFNLDKIA
KIDDMEGGEWRKQARRVSVSRNGFYACPGFRTGEMRKTCGEIDALFCASWSCITTNDGEWKWATKPWYITMSFVQRCTRT
RYSKTCNLVRIKFEDAAKSDNRWISGLIWGLYLYQKPLYGIPIQIKLIVNPITAPVAVGPNQVLSETRKPPVPAPREPQP
RAPKSTSPPLISTSSKYTPSAQNVTRGPLDLGIGDRLLNLIKGSYFALNQTKPEFTSSCWLCLATGPPYYEGIASTNNFT
NSANPTGCAWEQQRKLTLAEVSGSGTCIGQVPPSHQHLCNVTLTVPSSNHYLVPSETDWWACNTGLTPCVSTAVFSSGTH
YCVLVQVVPRVYYHSGDSFDLRYEQKTHTRPKREPISLTLAVMLGIGVAAGVGTGTAALVHGNHHLQQLRVAIDEDLRAI
EQSITKLEESLTSLSEVVLQNRRGLEIVFLKEGGLCAALKEQCCFYADHSGVVKDSMAKLRERLDKRKKERESQQSWFEN
WYNQSPWLSTLISTILGPLILLTLILTFGPCILNRLLTLIKNRLNIVHAMVLTQQYQTLRTEEEAQD
>LTR46_pol#LTR/ERV1 1968-5519 via tfasty with CfERVF1_pol, 5 frameshifts and 7 stopcodons.  [Primates]
RGLESTAPTAITTSEPRVILSVSSKPMSFLLDTQxGTSYSVLPEYSGPLLSSXISIVRVNGIPSRHKQTGPLLCNLSTAP
FTHSFLVIPQCPTPILGWDILSKFQASMQCGSYNSTPFILLXHPNASLSPHSSSLSTLLPSVNSKVWNVSKPTIATHHIP
VKITLQNPSIFLHQSQYPLNPAGLRGLKPIICKLLQAXILKPVNSPHNTPILAXQKTDGXYPLVQDLRVVNQAVVPIHPV
VPNPYTLLSHIPPSTTHSSVLXLKDAXFTIPLNPASQSLFAFTWSNPNTHMSTQLTWTVLPQGFQDSPHLFRQALTKDLA
ELPLAPSTLLQYVNDLLLCSPSLNLSIQHTTQVLNFLHSRGYRASPTKSQVAQTQVTYLGFVLTPNSRAIPTQRKELIRD
MPLPHTKKDLLSFLGLVGYFRLxIPNFDLLAKPLYTASHGPILKPLNPASPSTPTxKLKNALLMAPALGLPNPTKPFTLY
VHSDQGLALGLLCQTYGDAPEAIAHLSKQLDSVIQGWPLxLKILGVATLLASEAQKLPLYQHITIASSHXLQDLISHQSL
LSLPPSCLQQVHALFIGNPLITFQRYKALNPATLLPVNTSDSELSHSCLDLLDSLSSPFQHISXAPLQGTXTRFVNGSSF
REPCPAAGYXIIAENKLLESNALPPHATSQQAELVALTRALTLAKGKRVNIYTXSKYAYHVLXSHALIWQERGFLTTKGT
PIGNGKLIHKLLGVAKLPPKATIIHCKGHRKATDAXTEGNLSTNSAAWQAALKTPSLLPIFPSIHPVYTQEEQTPLARAG
AIQKKWFYLSDKSVLPKFXKPSVLSYVHNHFHAGYCALLQLLKTYIHSPAMAANLKDITKACSLCTQTSPQEAIKPPPFP
THQAxGHLPGQDWQINFTHMPPRKxFLYLLTIVDTFSGWIEAFPTTTKKAHTVASILFTHIIHRFKLPSCIQSDNGPTFV
SQXNQQLAKALNIKWXFHIPYRPXSSXKIKRXNALLKQQLTKLSLEVKMAWTSLLPLALMRLxAIPQKPLSLSPFKLMYK
CPFILQNLPVSSPPSIWDTWPALHLTQHLIRQYANAYLXQPKSPSSKHSSLSLQPGDWVWITDSSSSPLQPKWTGPHQVI
LTTPTAAKLTSFPHWIHHSKLKRAPDPHPEISSPPNYSPSLTGPTSLHLTRIPEVANPERPGP
>MacERV6_gag#LTR/ERV1 141-1886  [Cercopithecidae]
MGTSQSKIPRNTPLGCLLQNLEALHLAQDLKRKRLIFLSTVAWPQYKLDNQSQWPPDGTLDYNILLDLSNFCQRLGKWSE
IIYVQGFWDLRSRPDLCAQCSMAQVLLVKTQPSAPTPQAEEDSTSISDEADGGAPPSRPTNPPPYAPPTAPPSATPLTSP
ISAHTRSKTAVAAPTSQPSTSQPAPTPSTGQPASTPSTGQPVSTYPTGQSVSTSPVSLLAPLREVAGAEGLVRVHVPFSL
ADLSKIEKRLGDFSANPTLYSKEFRYLCQAYDLTWHDLQVILSSSLNPEERERILAAARQHADQWHLTDATVPLGEMAVP
SIEPDWDYQPQQPGRRRRDIMVQCLLAGMQAASNKVVNFDKLKEIIQHPDENPASFLNRLTEALAQFTRLDPTSPAGAAV
LASYFISQSASDIRKKLKKVEDGPQTPIQDLVKLAFKVFNSREEAAEAAELDKEKRRAVLQAQALVAALQPALPTLPAGK
TQGKSPKGACFRCGDPKHWADKCPQAKGSLPSDPCFKCGTTGHWASKCPNPRSPTAPCPVCHQEGHWKSDCPAVRTGPAP
QRGASPQRSEGSFQLLHLDDD
>MER34_pol#LTR/ERV1 2779-6344 via tfasty with PRIMA4_pol, 6 frameshifts and 4 stopcodons.  [Eutheria]
IDTGATFSTICSEELSLPVTSDSIQAVGVSGQPISSPISQATPISLGPLNTHHAFLVSDSSPANLLGRDLLCKFNATIQC
NEKGVFISLPSDQTSNFLLSLMETHLDLXSSEEDAILKDVPASLWASHANEIGLLLSAEPVHIAWKRNKPFPSVAQYPLS
RDAERGIEPIIDSLLQQGXLIFTXSPCNTPILPVKKEGKFDSDGNQIYRFVQDLRAISPIVIPRHPIVPNPAAILTSIPA
DAAWFTVIDLCSAFFSIPLHPDSKFLFAFTFRGRQLTWTRIPQGYCESPSIFSQVLKAXLDSVAFTQGSTLVQYADDLLL
CNQTKQGALIDSLILLKALAERXHKASRSKLQWVQTTVTYLGHEISQGTQKLTPKCLESVLSIPLPIXKKQLCKFLGAAG
YCHQWIPNFAALAKXLYALLPDATPEXILWPSEXLTSSEALKLALPYAPALGLPNFDKPFHLYCHENNGIAAGILGQPFA
SQIXPVAYFSCQLDPVAAGMPPCLRAVAAAAALIDKVSTLTLGSPIHLXVPHAVSALLQVHKTQHLSTRxQTTYEQALLT
NPSIILHXCDTLNPAXLLPLPDDGEPHSIPHDCLAAIEMVSKPREDLSDTPLDNPDLLLFCDGSCKxNFKGNIITGYAIV
SPHETLEAYSLPTIKSAQAAELIALTRACTLAKGKTATIYADSRYAFGVCHAVGTIWKSRGFLTSAGTPIANGHIIAALL
QAVHLPTKIAIVHCPAHTKETDTVSLGNDRADKAAKYAAKERPPXPFSTQFXNLPLSLXDIIDYQXNAPQXEKDKWIQKG
AKQLSDGLYIGPNGLPVAPFLLTFWLALISHQMGHMCRWGIVKELKDNWFCPGIYKISXRIISQCTTCKSHQISGGNQHS
SGSPPRPTLPLAALQIDFIDLPPALGFSHCLVIVCMFSGWTERYPTRRADATTVVKKXVTEIIPHFGIPLWIESDQGTHF
TAEINHLLAKXLGYSLKFHTPYHPQSSGQVERKNLDIKRTLGKVCQXTGLKWPEALPLALIKIXNTPNRRHGLTPFEIVF
GRSMPTGTSKPSIPGLNEHYGDLSEQFDAMTSYVQELLVYLEHIITGKKGMALPTDKPCHPFRPGDRVYIKVFRKKHALS
PSxEXPYEVLLTTYAAIKxKKISSWIHASHAKLDPDQHSQDNWKTIPTGDLKVRISRANPQAPEADGIMK
>MdoERV2_gag#LTR/ERV1 517-2592 [Monodelphis]
MSTTFFDNYMAAEEVGALRNEGYLQIFILIGTVIFVLLNTIFRDEKIKNIEDKIKQNEDKIKQNEDKIKQNEDKIKQNED
KIENIEDKIENVEDKIEKNEDKIENIEDKIENIEDKIEKIEDTIEKIEDTIEKIEDKIGNIENKIEKLEDKIGNIENKIG
NIEDKMGDMEDKIGKIEDKMQAQLEDLKCFLQDQWANTHSTRNRPVSEPLNEEISFPEIEMENTFPIAQLTDCFSRAVQI
LSEFNPQNPSPAIPASHVPSPTENQIPMQGRSCPPRETCPCQTDPQVQNSTRGLFPLREVPEIGRNGDVVTLRHRIPFTP
QEINEFTRNIPTYEQDPFLVTKKMGDIFFQYNPSYKDVESLLQAFLSEREKNKIIAHVNKTRGRNAAHWPSQDPEWDYNN
PEDYLQLYRCREAILTAMKECADSTDKWMELEKIKQKENETPSRFMDRIIEFGDRYLDWDLNKENSLRQVRRIFVNNSCK
VIKNYFKTQCPRWSDMDLEELRKTAIYVXKGNEEKEKENNDDMEEMKKKMRCVIDRITKLESGHDNEPTTIAPLQKSNYQ
SITCHFCEKKGHKMMECRTFLKMFGRNTQFNNGFRNNNYRNYDNGYRNQNSRNYNNDYGNNYNEYRNKNFRNQNYRNRNW
EFNDNAQIEENFNDNTQQYMRNGARPKITRGTNDPQRGALQGGAQGISQTQ
>ECE1_pol#LTR/ERV1 gi|400821|sp|P31792|POL_FENV1 Pol polyprotein Contains: Reverse transcriptase/ribonuclease H (RT); Integrase (IN). [Felis]
LQDFPQAWAETGGLGRAKCQVPIIIDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLELGVLRPCRSPWNTPLLPVKKPG
TRDYRPVQDLREVNKRTMDIHPTVPNPYNLLSTLSPDRTWYTVLDLKDAFFCLPLAPQSQELFAFEWRDPERGISGQLTW
TRLPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYVDDLLLAAPTKEACIRGTKHLLRELGDKGYRASAKKAQICQTK
VTYLGYILSEGKRWLTPGRIETVAHIPPPQNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESAPFTWQEKHQSAFE
ALKEALLSAPALGLPDTSKPFTLFIDEKQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAK
LTLGQPLTVITPHALEAIVRQTPDRWITNARLTHYQALLLDTDRIQFGPPVTLNPATLLPAPEDQQSAHDCRQVLAETHG
TREDLKDQELPDADHSWYTDGSSYIDSGTRRAGAAVVDGHHIIWAQSLPPGTSAQKAELIALTKALELSEGKKANIYTDS
RYAFATAHTHGSIYERRGLLTSEGKEIKNKAEIIALLKALFLPRKVAIIHCPGHQKGQDPIATGNRQADQVARQVAVAET
LTLTTKLEETNLTTNKYAYTPEDQEEAKAIGAILNQDTKDWEKEGKIVLPRKEALAMIQQMHAWTHLSNQKLKLLIEKTD
FLIPKAGTLIEQVTSACKVCQQVNAGATRVPEGKRTRGNRPGVYWEIDFTEVKPHYAGYKYLLVFVDTFSGWVEAYPTRQ
ETAHMVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLET
GLKDWRRLLSLALLRARNTPNRFGLTPYEILYGGPPPLSTLLNSFSPSDPKTDLQARLKGLQAVQAQIWTPLAELYRPGH
PQTSYPFQVGDSVYVRWHRSQGLEPRWKGPYIVLLTTPTAIKVDGIAAWIHASHAKAAPKTPGPETPKTWKLHRSENPLK
IRLSRV
>CfERVF1_pol#LTR/ERV1 2004-5552 [Canis]
RSPASAAPLTQAEPRVMLQVAGKSISFLLDTGATYSVLPSYAGPTXPSPVAVMGIDGNSSTPRATPPLTCSLDGFPFSHS
FLVIPSCPVPLLGRDILQKLGATIHLSPSPPSSPSARLILYLSTPSXPTPDQLPFVNPQVWDTSEPVVASHHPPVKIKLK
DGSKFPSRPQFPISLLHRLGLKPIIERLKRQGLLIPISSPCNSPILPVRKPSGAYRLVQDLRLINEAIVPLHPVVPNPYT
LLSHIPPSTTHFTVLDLKDAFFTIPLHPDSYFLFAFTWEDPDTHTSGQLTWTVLPQGFRDSPHIFGQALAADLQQCLLKA
STLLQYVDDLLLCSPALTISQDDTTSLLNFLGSKGYRVTPSKAQLCTPSVTYLGIHLTPTSKSLTGDRIRLLRELQPPQT
ADEILSFLGLAGFFRHWIPNFSILARPLYQAAKDTPQGPLTDPSSVRRLFSKLRDCLTAGPILTLPDPSKPFHLYTDERS
GSATGLLAQPVGPTYRIIAYLSKQLDSTARGWQPCLRALAAAASLTKEALKLTLGQPLVVYSPHRLGDLLSHRSLAHLTP
SRLQLFHLLFIENPQISLSTSPRLNPATLLPTPSPTSEPTHSCPQLIEDLTPPHPGLSDQPLSNPDRILFVDGSSFLAAD
GRRHAAYAVVTPETVVETVPLPIGTTSQKAELIALTRALHLSKGQRVTIYTDSKYAYLIAHTHSVLWQERGFLTTKGTPI
VNGPLIAKLLEALSLPTEVAIVHCRGHQTSKDMVSIGNNKADSVARETALSNPISPILFLNTPHRPSYSIKETQALQALG
GKAESKGWIYIRGKIALPENLAHTLITDIHQSLHIGPRALNQFLQPLFYYPSLPKVIEAVHRACKTCSAVNAQGGIRRPG
PNHQLRGHQPGEDWQLDFTHMPRHKAFRYLLTLVDTFTGWIEAYPTARETADVVATILIEHIIPRFGLPRTLQSDNGPAF
ISSVTQQVAESLNITWKLHIPYHPQSSGKVERANGLLKAQLTKLTLETRLSWPTLLPIALTRLRASPRGPSGLSPFELLY
GRPFLINHNLPAIPPPLLSYLPYLTLLRALLRAHADAVIPAPTDNASEEASPRDLSPGDQVLLRNLQPGSLQTRWTGPHT
VILTTPTAAKLLGHTAWVHINNLKRAPTGIEWTSQMVGPTKLRLARAPSHTSPEPPDPSGRM
>ERV1-1_AMi-I_2p#LTR/ERV1 1453..2385[Crocodylidae]
MRQVAVQGEEPTFVYVPFHTSDLFNWKNQNPSFREDPEKMQSLFRSVGQTHRPTWADVQMMLHTLLTSEERRLVQGAADR
IAEERVGQGGDIRDICPIESPDWDNNSPEGRERNSRYLGIIVEALGKAVPRVTNLSKLYEVRQGKDESPSGFLERLYDAF
KKFSNLDPEAPENQRMVNMLFIGQAAPDIRKKLQKAEGGPGKPLSELVEIAYKVYGNRDQVAERKEEKRGQKQMAMLAAA
LSKNTNTGGGRKEKPEGGQKRGKGRLKPDECAYCREKGHWKRDCPKLKDKKKETQSGXRQMRAESSGEDSS
>ERV1-1_Crp-I_2p#LTR/ERV1 5386..6963[Crocodylidae]
MGQSASNVPPGSPLGRLLQVWGEGNLPVQSGMGRKRACILCTQEWPVLTQQGAPDKRWPKFGSFDRSRLAFLRMELVALK
PQQMDYWYLWAELAEKAPKPVLYSTTPPPYDPPISVSVESEDGPEPLYPALPVPGQPLPPDESAAAPVASAPAPSSGPPA
SRGFSSVWTRSRGPVGEAFPPSQGKEHPNAVVQAPLRTYPVPFVDGGGSFQVRPTLIHVPFTRGDLLILQQQQTPSFREK
PDEVGRTIRRIVHTYDPSWSDMQELMDTLLTPDERAKVLDCARAVASAANRDPWPSNEPNWDYNTPGGRASLREARNDLL
AGFDEASKKPVNWGKFHACKQGPEEHPDAFFTRLCEAAKTYVRLDVDKPEHVPSLVSAFVNQSAPDIKEHFCRYTPGWEG
KSMLEIRNIASYVFDGRKERERKKERKEDFKLVAAMVEGTMHSMSGRGRNRGRGQGGFQRRGLGQRNQGEGWSTVQRASE
VCYYCKQPGHFKRECPQRKGMNIGAISERGPPPDQREEPVSKTTHRKEGLNDPTDHPHPVCPAVTINCNKSDPVASIQVG
EQRYDCLIDTGATMSMLSTTPERAGLIEEGTENVMGVGGELFKTSRSAPTRVQVGPLSCEHSFLLSARAPMNLLGRDLLC
KLRATLRCSPEGITLELPIDKLPYFAGHWPRGGEKRNLPVELQRLPATLWGWESTDVGLLKSATPVVIQTKGGVPPCVPQ
YPLNKEAEEGLQPLIDEYIRKGILVECQSPCNTPVLPVRKPKLGKDGKPVYRFVQDLRAINDYVIPRAAVVPNPATIVTS
IPWWATRFTVIDLCAAFFSIPVAAQSQYLFAFTWKRKQHLTWTRLPQGYTESPTIFSQILTRDLQGIILTSDTVLVQYVD
DLLLASRTQVSCRTDTLRLLEGLAERGHKVSPGKLQYCQKKVTYLGHVISEGLRELSDERVKAIKDLPKPTTKRHMRAFL
GAAGFCRPWIPAYGEMVKPLVETTRKGEPEVVQWTPELDHAFHQVKHQLSQAPALGLPNYEKPFVLFVHERRGVASGVLT
QKLGPQLRPIAYYSATLDPVAKGVVSCLRAVAAAALLVERSKELVMGYPLEVRVPHEVEALMTKEKTQAFSHQRLARYEV
TLLAAENVRISRCTSLNPASLLPHPEDGEPHHDCCTVVRMMEKPRDDLTDVPLNNPDLVFYVDGSSYIEAGVRRTGYAVV
TDFNIVEAKPLSPRLSAQAAELIALTRACELATGMTLNVYTDSRYAFGICHSTGQLWKQRGFITSSGAKIANSTQVSELL
EAIQKPRQIAVIHVAAHTGGSTPEAKGNERADAAAKAAAQQPLSLNALAPVWETPRALEGYEQACKGEEEDWKRLYGAYS
KDGLWYTSDNRPILPKTLQRPLCQIVHGQGHYGATAIAETILRVWFAPGIHAVAKQVTSVCPTCPAFNSGPERKAPPGGR
PWAYQPFERLQIDFIELPRCRGYRYALVVRDQLTHWVEAFPATHASHQQVAHALLKDIIPRFGIPQVIDSDQGGHFTSQV
LQTIYTRLGITRQLHTPYHPQSSGGVERANRTLKTLLGKVCSETQLKWPEALPLALFAMRNAPRADVKISPYELLFGHPP
PITRGFLPPATGLLAGDENLTHYVISLQKQLTSLQRRAAVQQPVPFDCEIHPFSPGDYVWVRVPRRKSCLEPTWEGPYQV
LLTTHSAIKIAERNSWIHHTHVKPAVFTPTEPHRVPPLRLRRSNSQWTICALQVLS
>ERV1-1_AMi-I_4p#LTR/ERV1 6089..6889[Crocodylidae]
MSXCCKCKESGXVPFSKTAYEQAKSSISKAYLFPISHCCPRQEIMLEFVVSIGHMVRCVKTEQELWEAILKYRPSSLQPV
ETVPTTVSGPSXTAISKPGGPPINPWAGNSWVTLLRDSARALTNHSCILCALTPASSEEGVPFVPIPLNKTGILSDWGFN
RHFNFSFRYNGSGRLRVVKIRGSICISQRGGGFEVGXSRCQETWISKEAAPREGAWTCSSASYDTXEHCGCLLGTLQLQF
PSSVRGKNAFVWRNCTVPYERIPKEAH
>CfERV1_gag#LTR/ERV1 393-2063 [Canis]
MSLLTVCAFVCVVGSLLIVFTVCVLVWIGDIMGETETTPLSLMLSHFSDVRERARILSIDIRRERFQIYCISEWPTFDVG
WPREGTFHLPIILQVKAVIFRDKPDGHSDQVPYILIWQDMIENPPPWLKPFLPPKAGPTEILALRKAEKETDSTPEAPLR
PVFQDSSPEDLILPPPYRAPPPPSAPPLEASGAAEGAPPLPDEGVPVRGPAAGTRGRTHRTAPPPNAGPADSTALPLRAM
GPPDETGEQLMLYWPFSTSDLYNWKTQNAKFSDNPRDLIGLLDTVLFTHQPTWDDCQQLLQVLFTTEERERIQVEARKSV
LGEDRQPTQNPDLINAAFPLSRPTWDYNSAEGKERPRVHRQTLMAGLKAAARKPTNLAKVYDVRQGKDESPAAFLERVIE
AFRQYTPMNPEAPETKAAIIMAFVNQAAPDIKKKLQRVERLGEKSLQDLVIVAERVYNNRESPEEQQTKLSDRQTRNLAK
ILLATTMDDPQERRRHLKKLASGTGKEDGPGPPRERPKLNKNQCAYCKEEGHWVKSCPNKRSKAPAKILEMEDLDD
>ERV1-2_DR_gag#LTR/ERV-Foamy 157-2184 [Danio rerio]
MTDASGIQIHLISNEELKTRKKENPLHVSPQSCTIGNCVYIGVNDQENNWLELFDAIDKATGTGEQVELILHNHKGPVQF
PERFRGRIKVLKNNTTVSPEFYAESEDERAGSILGEQAHAAAPYRSEVTFLPXQRDKEPETDRQIQWGPSTSTPYDETLM
RKAKAKTKHSPLNPLKAATXRIHKMSPLRKDSSSDSSSEEDRXLQTRGRIRQKNARPSSKDRKTSAHVDGRFIKAGNRRV
TIPEGFKIQLKKVEGTTRSEQKXNADMIYLATAXTADEILERTDINQKAKLDMVCELADALQALISGIIWSGMTEDENAS
SKYNPKLGTVHKIRKHFAKSXSQESRGRQXXAESRKRQDTPLPSDSSETESSEATXSSDEEFSVRKSIMLAGKENKKTKN
SQAVSELKERALYPLSQLSFPAEATIMDKAQEIVRMGELYKADDDLIEAMIVHHTRKRIAPATVRLQLGTILGKSPEDER
NDRAEMIRAIGVYPYCLDRQGKVESVYALIRELQEVTDLVPGLAEAKLLGPETTWVELSNFAIRWERKRKLISEKQRVQP
PRAAAQRAQRAPPARKGRQQRQRAEAPVTERHQKSMQEKPKSRNKFQKSDFKQKPAESDYVSKENWERMTPEQRQDLIDK
RNKKKQSKSKNKTREVKRNERVVNSNRKESRNREE
>SpPat1_yr#LTR/DIRS Strongylocentrotus from_retrobase [Strongylocentrotus purpuratus]
FLHTALGVRTAVKEEMKRAQVTSSKFIQLAEQMSSHIIKSRSENTNKKYFAAFNRWDLFISAEGGNSLPAESIHVALYVT
HLIDKGHSSSVIEGAVYAIKWAHSLRGFRDPTDNCFVKNLLESAKRQCKKKVNKKDPVTSDQVKELCKKHVHTEDAILLR
DLTLLILCFTGFLRYDEARSLKCNDVSIYDDYISLNIAKSKTDQYRQGNSVVISAGVTEACPVKMVKKYINVARISLDSN
HFFFKPAYRSKGVSALIRKDKPLSYTTARERVISLLKEVCGDANLGLHSLRAGGATMVANTSTKDRLWKIHGRWKTDKAK
DGYVVDTLDNKLEVTKSLML
>ERV1-2_DR_p4#LTR/ERV-Foamy 6550-8885 (1 frameshift, based on REFSEQ protein XP_001919031 which is a fragment of this peptide)) [Danio rerio]
MKRVCLCSLLQESMQKDGPVRGVRESRKCTESRVQETVMSLMITSSLLLIIIGTIFSGLEIKTQSTEETRHVCKHVEITE
DWVCPNQEITVKNKTYNSSDFETMMKSYIRNIDDRFWVCNHSNPIALFIPSKYNGLMNNKVKFKWDSLIVINESHVRLIG
LEILNKNQTVWTNESSLSVWNLELGVELSKSVGHCWQNLTNAKQWIMTDSISAPRNDKILRGLHGGRISKVGLLSETGNE
TSRNRRLTNWLMAGAKGHVTYWPDGLNSTHLILGVYKEKPVIPYEEIDWVTCKQHQTQGKYCDSEKACIHKLGMRPFSSN
GAKFLIRKYGGLKPDSWASLFQHNMVKYCTDLTKAEYWYCYITGQSLYDQNLMDQYESEIFDKWKAYVRYMGIREERVLN
ETCETIKCFIDSHWIDNRGIHPLMLDSSHGVPESVANKSGLTDFIKSIPDQQYRMALALYVYKWDMLTRAEYKTRPSPVH
MGLVDSVHGLWHNKFYIKFDFSHKLMGAYRHQFNKLRFFHPNFRKTIYTRNLVDVSYENRTHDYWKGGATLNMGFSGFKW
NLYENSGLNNSASLIGAELQECDPDIFNNWTYKYIPPYARGDEIRLFKGENSFCSWENYSIITEKIRDRCDKINCSIPWH
AIFVSALPIVAKYENQVKKHCAIIGLENFHVKRKLTELVDDYIEGTSLGPNWHFMHNWISALDIVIDDVPIIVKIRKTLL
NAGVIISLGAGTAVEIIKRTVIGXWKWIKLILIIMGCIVXIVLLISXSLKTAQLCGF
>ASSBSV_gag#LTR/ERV1  gi|83722645|ref|YP_443922.1| polyprotein 1-758 [Atlantic salmon swim bladder sarcoma virus]
MASSQPLKMKFSEYLDQRMQDRAGGKVQWKDHKKVWERLKLRWTQEGYLAGGAPTRVQLSTMEGELREGKQRAKDSEVDL
NRQHVFRKEGTKQREKAEEELRIGTWAIEETRRFIMLRTPAVMGIATDMKEGGVPTISPATPAENQTPTQRLYPDLPEDS
RPPPYSPSASPSPTVQAPVLTVRGGVIKGEVHLVEGTIDVENSEPPQRSMDTDDLGPAGGRSTRGPDSLEEGSMRTQSSK
RTRNPFLDQPFSSPPPSGSLSYRPLPQSLPSPLSRAVTTPHSYTGEHQQLRQNDIDREYLTSYNMPQEEDENDPAPTQEQ
IWTAAEQLNREQFPSGGGGPYQLRGTFLGEVQDLQTELSQPGPRRSQRLIEQRNRTHLQAPLRLCATGRGEQYSPWKLTD
LTSMMEQLPSLHGGASAWLLQLQTLTSGFRLGLGDMRALLARATDHVTMNVIMKTAGLDHLPGPTPPEVYTGPLWAELRR
NYPTERDYAALSSFLMNPGEGPAEYLDRAKTTWRTVHGEPHDASETSLNMWKEVVINGTPAPVKAKLRQTVGLCSKSKAE
FCSHVHHHISQHHKDAGGAESEIKALQVQLLKLQLKDAQKTAQPKKQMVEGAVPLPQLVHETVKQMLATPSPNPAPYPQP
PYQPPPPPLSPQYPQAYPGYGYPPRGPPQAGGHWGSRYMNNGACYNCGQPGHQARNCPLPQTDSQRRFLLNRSQGQAGRG
RGQPRGPLRAPQPIPAPYSPAGPSLPFQGMYDDNTPWE
>ERV1-2_DR_pol#LTR/ERV-Foamy 2185-5214 [Danio rerio]
GCLTPGKKAIMSEQXXETADMNLNINXEGILFDLDTGADVTVVSQLPKEAKETETAFNVKDFRGNXETHKVYDWKNLQII
KGVNNLMTLKDASTILQSKQIGWLKQINLEQEIKRMAETSKADRTKVTEILRKYQTHAARSKNDCGKLSDKWQYEIKGGI
PPPQRQYPINRXALPEIKITIEELKRKGIIKEVDNAPTNSPIQAVAKPDGGWRLVTNYKALNKQTVPDTRYLINARDATG
AAPEGRLLSKIDLANGFWSVPLKPESRARTAFTFENKQYVYNVLPQGFKNSPNAFQAIMMEILKGLPVVVYIDDILIVTN
DEEEHLKILDETLSRLTKEGFRLNYKKMEIAKDDVEFLGFQITGNERFLSQTTENKLKELRGKEITSLKQLQSMLGTLNF
VRDLIPGYAKHAKPLYNATRGGVLTWNEKLSEIKAKLIDEALNSGRLVRRDETTPLVVKIANTEDEIEIIIYNEXNEKHP
VSFISSTKPANQRKLENMTGGDIXATLAKSLITLKCLALDQPIXVKAKGEGINQIVREXKNLISENKRVHCHTWAKWSVI
LNDTQFQFKSDKIPKAEKTTKVPIDKVCYYTDGTTEQGITRWGWIRKKGRKVTESDKGSLQAGLSAQAAEVKAFRKALEK
AKQLNDLKCFXVTDSDYIYQAVEEHLGTWKNNDFNTSKGKPLKQADDWRVIDELITEITPTVLHQTSHTSQNTTAAIGNK
EVDSYVRRVRAVTKESQKDLLEKLHIELKHPTTKYLALYCHALGLNIQNLKSEYYKIKVNCPNCRKAIDSRYNDYGSIKT
DHENDEISMDFAGPIRPQTKKKNCYFLLITDNASEYTQIFPCKRATEEVVIESLQQWFKFRGIPNRVRADGAXNXSGRKV
EQFIKDSGAKLIKSVKYQPXSNGIAERRIKEIKNWXCKNNXLPWDEQXIDCLKFVNYRVPIPEKEENPPRNRAKIKVGDI
VYIQKRVRGHRFKENLGTEDKVKSIPSNTTVELEANGIWSLRDIIKKPE
>ERV1-2_Crp-I_2p#LTR/ERV1 2002..5676[Crocodylidae]
RGRGSKTTTLRVGAREDPMVTIRVGGKNFEALVDTGATFSMIPEKPPCAGTSEQHVLVEGIEGTQSRLPVCKPLLTKVGD
HLLEHSFVYSPSCPVALLGRDLLTKLQAEIFFRDDQMVVQLPVKQSSNYQMALLEDRRPVVSSEDHMTGVDPSVWADGTP
ARAKSVSPVRIILKDGEGPVRVKQYPLSRAARVGLKPLIEKYKKYGWLVEGSSPYNTPILGVPKADGVSYRLVQDLRAVN
KKVLSDHPVVPNPHTILTQVPGEAEIFSVLDLKDAFFSIPLHRESQKLFAFEWEDPDTFHKAQLMWTVLPQGFIAAPHIF
GLALQKDLEEWKGSHPAVTLLQYVDDLLVASPNLQLCEEATRSLLNTLGEKGYKVSREKAQICQPQVTFLGYKLSKGVRA
LSADRIQAIQGLASPKSPKELRAFLGLTGFCRLWIPDYGGKARPLYDSLTKESLTEWKWTKEMQHAFDLLKAALTQPPAL
AIPNSKKPYRLYVHENRGVASGVLTQPSGPTWRPVGYYSKVLDPVALGWPACLRAVAATAVVVEEAQKIVMGADMEIHTP
HGVPQILGTEGGKFLNPSRQSRYEIFLLSNPGLTFKHTTALNPATLLPEPGRPTHDCLEVLNQTTQVRPDLAEDPIENPD
AEYFVDGSSSVIDGKRRTGCAVVTLDKVVWRESLPSSWSAQAAELTALTRALQLGTGRRVNVYTDSRYAFSTVHAHGLLW
KERGFITASGNKIANGPQIIKLLDALHQPKEVAVIHVRAHGKAAEEKHKLGNARADAAAKEAAFIGGEAEEVSRQALSHA
IWPYVRDLVPQYSPEEDKFAQEACAEKNSHGWWIVPGGKVMIPRPLLREVLHQLHASTHMGGLAMGDLVIRQAVAPGLYV
EAQRIATRCITCQKVNPRTKPPVPMGGRPWAAYPGQAWQIDFAELPRSGHHRFLLVMVDQLSGWVEAWPTRTATAATVVK
YLLQEIIPRYSLPESIESDQGQHFVGKVVQEVAQALKITWKLHTPWRPQSSGQVERMNRTLKTLLTKICIEAHLKWPQAL
PLALTCIRNTPRRGIKLTPYEIMFGMPPRVLPPGMRENVTFELGNSELHMYVIALQSVLSSLHRYAASFQRLPLDVPVHE
FRPGDWVLVQRWKKEPLTERWSGPFQVLLTTHTAVKIAGHDRWIHHTRVKRHPRASEDTSSQDELTPEAEPSSEQEASRW
SCEPTGDLQVRLRRLNQSPENQIRK
>ERV1X2_ML_pol#LTR/ERV1 2053-5640 via tfasty with ERV24_MD_pol, 1 stopcodon. [Myotis lucifugus]
QGSAGPQEPRITLTVGGQKVDFLVDTGATFSVLQQPVGPVSKTKIPIKGATGKVKSYPWTKGRISDLGNGSVTHSFLVMP
ECPCPLLGRDLLSKLRATISFEGPGPEIKLQDPGTAGLYLLTLPLQEEYLLHEEEPGEVSADAYLQQLRQAIPGVWAEDN
PPGLAKHRPPIVVQLTSSATPVRVRQYPMSQKARAGIAKHIKRLREAGILIPCQSAWNTPLLPVQKPGTEDFRPVQDLRE
VNKRVETIHPTVPNPYTLLSLLKPEHRFYTVLDLKDAFFSLPLAKQSQPIFAFEWVDPTEGESGQLTWTRLPQGFKNSPT
LFDEALNQDLREFRQDHPRVTLLQYVDDLLLATQEEQDCKQATRELLTALDCLGYRVSAKKAQLCTTRVTYLGYNIEEGR
RTLSSSRIKAILSIPRPTTKRQVREFLGAVGYCRLWILGFAEIARPLYSATGGKEAALVWTEKEEEAYRKLKEALVSAPA
LALPDLTKPFQLYVAENKGVAKGVLTQPLGPWKRPVAYLSKRLDPVASGWPNCLRAIAATALLVKEASKLTFGQNLQVVA
PHAVETLLRSPPERWMSNARITQYQVLLLDPPRVSFLKTAALNPATLLPDEEAEAPLHDCEETLTALTSLxEDLVDQPLQ
NPDETLYTDGSSFVEGGIQYAGAAVVTQKEILWAQALERGTSAQKAELIALTQALRWGKGKRVNIFTDSRYAFATVHVHG
ALYQERGLLTSGGKDIKNASEILNLLAAIWGPKEVAVIHCRGHQKGNSPEAQGNRFADQTAKEVAKRPVGPLEVLVALPA
RRLPEKPTYLPKEQELAERLRAREGEAGWLILPDGRPIVPEALGRTIASQTHQSTHLGGTKLSELLGREFYIPGLQKISQ
DLARRCQVCAQVNQGPPLVAVPGQRFRGQNPGEHWEVDFTEIPGGRGGYKYLLVFVDTFSGWPEAYPTKAETAQVVVRKL
LSEIVPRFGLPLYMGSDNGPAFIAKVTQSIVKALRVTWKLHCVYRPQSSGQVERMNRTLKETLTKLKLETGENWVSLLPF
ALLRARCTPYIKGLTPFEIMFGRPPPLLPRLREEEIARLSTRNLLKSLQALQSSATSAQRAVRAVREEDVLRSSPTQPAF
SPGDLVWVKRHDPGSLEPRWDGPYQVVLSTPTAIKVAGKRHWIHRTQVKKANDSIERWQVQKTGDPLKVRLTRCSS
>ERV1-6_Crp-I_3p#LTR/ERV1 5883..7025[Crocodylidae]
MLPFLLLCFMPGVLVGAWEENSIMFLGQSIASAGNLTNCWVCIHGPTHPARGIPMLGVPIPLEDWGNSTNTSFVRFSSHS
NRTQQSIPEWWKKTRDSWRPSSRLEAALCYRSNGSGRTGEAGYSVGHYPKCRVTFDYHSHNTSGILLGNTSFQCTNGSLT
IHRTLEDTHSLVMNGSEFYVLLGSTSCNQSISRCRLVGSQRAPSYTLQVNRKCRIGSTTCRDLSTIAAPGLFWLCGNDAR
KILPWHWVGTCTLGRIVPEFDLHPSLSRHEVSNLPPGLPRHRRAVENPLVRRPTGFHQFTRAFLPWLGVAELERTIVNIS
GVMEEFFNASADALGALNDEITQIGQVATENRMALDYLLAAQGGVCAVVNHTCCAWIDQHQ
>ERV4_DR_env#LTR/ERV1 5382-6854 [Danio rerio]
FLFCRLLLLITLLGLTQAHTEVHNLFWQYANWTARQTTNESCVVCQEVFSSAVTISLKPLPFTCIKLAFCTNALGDIYEW
RPTCVSNKKTWELLCKSTSRKNHSVVIPTPRTMGLNILLTKPQGFTFSFCFNGTNGGNVSTLRAKDCNIVIGERDRFSGV
YLPWRKNKKYSSLLSVCPRYIPGTCELNKLKCANITNETAVTACYNLNNTYCQRSNVTCVPTWPRQDAVLADDWYWYCGG
ETIFNTYPTNWTGLCTVIQLQHMVTVMHLARQFGRERRSVPQDDVPDEHRMRSHWTRFWEAMIPSFGVADALKQQEIMHY
RLASFINSTTDAISGLREEMRALRLMTMQNRLALDMLLAERGGVCSLVGESQCCTYVPADDEDLGRVGQAVKAMKRISSQ
VYEDEMKERNFNWGWGFLESLFGSLAPYVSMVVPVLIIFLCVCIFGPCLLRCFMERMYRMVNALGKGYEHLAMNGNEGNH
LTNRVYENMV
>ERV15_MD_env#LTR/ERV1 6293-8156 via tfasty with ERV27_MD_env, 4 frameshifts and 1 stopcodon. [Didelphidae]
QAGFSHQPWKWSLISFEHPTTLATVITSGTPSLQTKTCDLIWGPKDIRAPSPPVKPLNPVCRNTGVFYLCPASNPGKSYC
NQPNQYYCANWGCETIVTGGNTRHGCNPWTPSNPDSWLTVKWGPHDCGHHCSRRDPYPKIECNQLILEPLQATDQSWVLG
RTWGIxWYRSHNGGQQLGGLFMLRKEPILPPPTYPVGPNLVLNPSQVRPGPPSPLPLPSPPSLRETTNSPSPQETTISWP
LYSTPTAQVPPYHHPVRDNPLFPLLQASFSALNHSSPNLTEHCWLCLVASPPYYEAFGLNASYTTSQEESPSQCQWGDSA
PGNPVPGLTFSSVIGNGTCVAGNSSRPDPRLCSATVHLSGGKYLIPPEGARWLCSRSGLQPCVSPTSLNDHLEFCILVTI
VPRVTYYTEQDLLQTWDHISSRRWRREPVTITIAITVATLLAATGAGVGIAALTTQAQGYHHLRKAVDEDIARLESSINF
LEKSHASLAEVALQNRRGLDLLFLKEGGLCAALGEECCFYVNHSGIIRDSLSKLREGLEARWKERETASPWYAHLFNSSP
WLTTLVTSLIGPLIILILLLTFGPCIFNRLVRFMKDRLDAIQVLALRQQYQPLATIEPRAEG
>ERV6_MD_pol#LTR/ERV1 2219-6114 via tfasty with ERV13_MD_pol, 1 frameshift and 2 stopcodons.  [Didelphidae]
MENIRTKGSNEKADDGVKDAKSWEYHVVQADVNLDGQEMTELCTDVTVLAPVLETFQPPNSTEPYVSVTIGDQIYDLLVD
TGASKSVLQSLPKNCRAVGTMEVIGATGKPERVAKLQPKMITLGPLSVEHAFLCMPDCPMNLLGRDLLCKLxATIQCTDT
GDISLHLPEESLKAFPLLFLDSVSTEDDLDSIYPIPEDIPEDLWSKSSTDVGLLKSATPVRVRTKEGPVPCVPQYPLSKE
AIEGIRPIIESLIQQGIIIPCFSEYNTPILPIKKPKLDQNGKVVYRFIQDLRAVNDHVIKTHPIVPSPAAIISSIPSQAR
YFTVVDLCSAFFSIPIHEDSQKIFAFTWEKNQWTWTHLPQGYTNSLSQFSQILNRDLKTITFKESKIVHFVDDILLASPS
AKVCLRDSKILLIELYKHGHKISKAKLQWVLPRVQYLGFVLSEGSRSITQKRIADIQKLSAPKTKKQLRAVLGTTGFCRQ
WIPGYSELTKCLTDLTRNTEPEPLKLKPEHLQALSKLKEAILSAPALGIPDYTKPFQLFVNETKGIASGVLTQTLGQSYH
PIGYYSCQLDPIAAGTVPCLRGIAAAAVLVQKSADLVLGCPLTVYCSHQIEALMRKFCTQAYSDQRISKYEIILLGSENI
QLRRYSVLNPATLLPDLPKNECVEVVDLVDMPRMDLKDTPIENPDLVLFTDGSSYLCNGIRCTGAAVVTEFETLWYESLP
SNLSAQGAELVALKQACLLADGKSANIYTDSRYAFSVCHATGQIWKQRGFITALGKPIAHAEIITELLDAIQKPKQLAVI
HCRSHTYGRDSVSKGNHRADITAKFAASNAPVYVMNLSTIESDDLEKAYVDSEIQKWKEKFGARKEHGIWVADTGKPLLP
KDLYTYLCQAIHTKGHFGTQAVIDSVKRQWVAPGISTVANKICTSCSVCQKFNQGAFRQKGLGGRPLAYCPFESLQIDYI
SMPKAGRYKFCLVIVDRLTKWPEAFPSNTNTASFVVKVLIKEIIPRFGVPLTIDSDKGSHFTQDILKRVYENLGITPKYH
VPYHPQSSGQVECVNRELKTMVGKICAETHLKWPDILPIALFYLRTRPRADLHVSSYEMLFGHAPLQAKTYKTVYTSLLG
GDCQLASYLSALQQQLKELHDMGVLIQAGPLDYSLHNFKPGDMVYVKNFAKTSAMQESWLGPYTIVLVSLSSVKVLDRDS
WYHCSHIKLAHGINNENVQIIEQEEIEEExIVESENHQIESAVRKISKERTIPVEEDGRGQCRSRGEYRKLMDIVKRLKL
YKFKDFEKLAMKRIIGLMD
>ERV1-6_AMi-I_1p#LTR/ERV1 395..1774[Crocodylidae]
MDAWYLWDDEAEKRKLRSQVASHKANTEKLTEQLSQMKASVPTPSASAPPSFSPLYPQIPRRPEPPSDLLDSWVPPLSPP
PPPPGPNQGAAAATPETPLAFPPPVTPEIPVILPDPTDPNGEVVIHLTPEQNDTYHIDRVEPGDTGDDLVMVYSPRANPE
AVRTVGLSPAHITRRRRQGPVPFRQLPRNPVRQLPLREYPNPTGGQPLRVHVPWTPGDLLNWQDTFPKMREDPLGFKRKL
QTVCSIYKPTWGDINQLLDTILNPDQRQQLTSAATWPRQEPPDDATLQAAITNLLGAINTICPFKPDWGKVTSCTQKPEE
HPADYQARLLGAYRKHAGCDNPEENYKVSLIQSFVLGLQPSISNLVQNMVGWQEKPLPELLQAAIHYHDKERSEKAAKKS
KLMALQTKQLEPRPKTTSGAPTSSRRPRDKSKDECRYCKQLGHWKNECPKRPQRAAPNSQ
>ERV1-2_XT_gag#LTR/ERV1 974-2566  [Xenopus (silurana) tropicalis]
MGNTLPKPRGGQTPTGNFSVPGTETIGAPESSLSPVAVMKEKYGKWVCRWLNKWFKLTKQTDLAIPLKGTFDTLKWVNLY
KNFKSKLSDPKELKAWGRWMLESRQKCKRSIEVHVTKVGQSQEEEEIEGEDLMREIEGVALSVIGDWLPRNTLTGKIRPT
STLTPTPLTHDTETTHRSHSTPKLAPTWTHTPPPYNPLTPSSPDMPSLSFEGGFDQVSPVTFPQVQPPHGTGSNIQWIEG
SLDAQIKGKINVQPINTPPISHAGGQLIPTFPVREQRIMGAQGPTGIHTHVPWTPGEMKGFLATIPKPRHNPHAFAQEIL
NIALCYSPTWRDLLQIIKGVAGVLDMKEICTKLDLPENPTAPFDTPDKAKEYAQKLSTNISTVFPPQSWSRVTNIVQKPK
ELVEDYFERFRQAVEAAGGELEDKGLGKVLTASLVSGLNKNLHDKLISAHADWRDKSVPALMSIASSIQRNIEELEEKKQ
KVMVIYTETGGAVKRFPDLSKVRCYNCKNLGHYARTCKAPKREESRNKKQD
>ERV1-2_Gav_gag#LTR/ERV1 234-1754 [Crocodylidae]
MGQGGSKCPGDAPLSLILRDWKDISGTAGLSKAKMRNLCWIQWPSFTSHLSPTRDWPECGTFSTERMNFLRDILVDLRPG
QMNYLYVWYNYKPMEGRVAFEAVCMDDSCKNPPPYALEPHREEDEFVPVLPPVRRSERVQEKQDRERVGKEEEGGAAGES
VPSPLRTPASPLETWLGGAPKTHPVIQAPLRTYPVPTVAGGHQMVFTHTPFATSDLLNWQRTMPRLRDNPEAVERMFRTI
FSTHVPTWADVNQLLNTLMTEDERQKVKEKATAYLRARNWSLNDWPTADPNWDPNVRAQKLDLDRFLEAVLNGIKEAGEA
TPNWSKVTACVQRSDEHPSDFCTRLTCEIRKHGCLDPDSDHGKAMIKMVFMSQCAEDIAKRFREHPDGMQGKS
>ERV1-3B_AMi-I_3p#LTR/ERV1 6081..7862[Crocodylidae]
MAFITMLFLIFLFAGGMGPLPGSAMAASCCRCATPGIRSFPVWIRNSIEPSEIDGKVNVARWYPPSHCCGSAEVRVFSSG
VEYCVKPSHPIYKQFAESAQPLRLRLLLNMLLPLPLITTCTSNTYERAAKAENQSNCWACSHLPLHAQGGIPMTPVPLGP
IESFLNPPSQTWNQNQQEYLLVRPVVGDWCFYINCSVPNCINLGTSTCYHYFTSLTGGDWRNNNTTTPTFCSSYNNFYSA
TNLTNGKNPICNPTPSTPQLWYCAYSDSTLGQCFVNGTVNPSYAKKGARGVLSLGTGNLPFPESFSNRAAFMGQYWICGS
RAYHIIPANGKGICYPAMLKPSTSFLAHLPQGRWQNKRDLQESRDMLESYQKNPLTKGKLIGCSLAGILPGVGTACLGRY
TLRLQAVIEIMAHELSEGHQQLSNAVAALAATQEELRQMVIQNRIALDFLLAAQGGTCAVIGQECCVWVNSSFTIVQTHL
NDAAVHIQKAKDIAKIPKDTSLSWLNSWFPSLTGWLRTFVLSIIGVIIVIVCLLCCFQCLCSLGQQLMQKQVKMYGQFVQ
ISSNNNHGDLTPLELNYLKECSKTSSGSLEQRGE
>ERV1-4_XT_gag#LTR/ERV1 173-1306  [Xenopus (silurana) tropicalis]
MLKITASNASTMSMGHYKTTQENEMLQKENGELLSRLKDAEGAIRYLSVSRNHGSSDHSKCQAQILELKEQLGQRGAIVA
AFNTPGTDQSLIDINWDLLEPSQQNTSLNNCASAPMAPVTVHIKTGTDGEEVGRTRVETPLSNSDIGTLSKELGLIRISD
DPVETMLRIQTFQKSHVDCEDGDVFDVVVSSLDQGIKASIPGSVYKTHLLDVLVNAVLEVLGWDESYAHNAFVNCLQKKG
EPIQAFSDRLYAMYSFTVQRPGRADLEDRVFKNALIKQSLPEICRLVGLTVSLSNTYGEIINCLKRAELMVREQQRSSRG
KVAAVEGPLTKPYNSARPPNYKSGEPKCHSCGHLGHIIKXXXXXXXXXXXXXXXXXVT
>ERV1-4_AMi-I_2p#LTR/ERV1 2103..5741[Crocodylidae]
NKGGLFHMMYLGESSSFEYTCAPSSPYVPLQIAGKIYKCLIDTGADLSSLGESPKRAGIAVSGTEKIMGVTGKSMRVPRG
TETQVQIGPLTTNHAFLLAEGTPVHLLGRDLLCKLQATIKCSPSGITLALPAHRMEHLQMALLPSPENSPLPSDLDGLPR
SLWGWEVTEVGLLRSAESIRIKVKPGPPPSVPQYPIPQEAVKGLQPLIDSYLQQGILRECASPCNTPVLPVKKPKLDAEG
KPVYRFVQDLRAINNYVVPRHPVVPNPATIITSIPVTATYFTVVDLCAAFFSIPVHKDSQYLFAFTWENRQLCWTRLPQG
YVESPTLFSQILHKDLSTIALGPNSALVQYVDDLLLACPSEQQCKRDTLTLLQGLAARGHKVSPTKLQYCLSEVEYLGYI
IGPGVRKLSPKRIKAIQDLPIPKNKRQVRALLGMAGFCRQWIPAYGEMVRPLVEATIKEAPEVIVWTPTLNKAFHELKHS
LMVTPALGLPDYQKPFTLFTHENRGIASGVLTQPWGVSNRPIAYYSAQLDPVARAAVPCLRAVAAAAVLVQKAQDLVLGH
SLVVQVPHAVEALLLQHNTQHFSNQRLNRYEVLLLAAENVQLQRCTVLNPATLLPNPEDGDPHHDCCQLVEAQEKPRSDL
LDIPLSNPDYVLFTDGSSFVREGIRHAGYAVVTHHWVWEAQPLPAGTSAQAAELVALRRACELATASRVTIYTDSKYAFG
ICHAIGQLWRQRGFITSSGHAISNATEVQELLKAIMLPAEIAVIHCPGHSREDTEIAKGNHLADAAARAAALQTKESLLA
SQVVLPPLSVIYDKVPADEISIWVQKWEAVQGKDGVWRVPDGRPIAPRTLLRTLAQDAHRCSHSGKGEIAEQVLSTWFAP
GIHLEAARITLQCSECRAFNKYRGHKKLQGARPWAYLPFEKLQIDYMDLPKAGNFKHCLVVVDQLTGWPEAFPTRKADSV
AVVKHLLKEIIPRFGIPGEINSDRGTHFTETVLKEVYRVLGITAHFHTPYHPQSSGQVERMNQSIKSLLGKICSQTKLKW
PDALPIVLFAIRTKPKRPLNLSPYELLFGHAPIIYKRWENPHVSLLGGDEALTSYVLSLQESLQCLHRSAALVQPVPLDC
NLHPYQPGSWVWVKQHRRKNALAPVWAGPYQVLLTTHTAVKIAEKEGWIHHSHLKPGTEPSSESKTSASNDQSTAVPPLW
LKRIGESWTVQTP
>Copia-85_BRa#LTR/Copia 41-4169 via tfasty with Copia-41_BRa, 83.9% SW:4558, 1 frameshift. [Brassica rapa]
MSSESSAATAERTAVYNSSDPNNSLLSVNMGNITKLTNTNYLMWSKKIHALLEGHELHTFLVAHDSIPTPTIETDGATEP
NPAYITWRRQDRLLYSAVLGALSLPIQPLVASATTTHEVWSTLASAFGTPTRGYIRQLKFQIKSCTKGSTTISEYLRTMK
TKADELALLGKPMDPEDLIEQVLAGLPEEYKPEIDATNGRDNLISFTELHEKLVNREAMILCAQPSSPAFPITANQASRS
KSNNNNWRNQTPQHHQQQQQSQGQQQQQNRNYTRQSRPYLGKCQACGVQGHSAQRCPMFRVIPTQNAPSSGQQWRPSAHQ
AGLNTMNPEGWLMDSGATNHVTSDFHNLSLHNPYTGSDSIVIGNGSALPITHTGSFRSHTPTRDYTFNNVLCVPSIHKNL
ISVHQFCNDNQTSVEFFPSMFQVKALDTGATLLKGLAKDGSYEWPYSTLGAFSVSKSSLSHWHHRLGHPAFPILKTITSS
FLPLVLCNALESTPCNSCLLNKSHKLPFSTTTISSTHPLHVLFSDVWTSPVLSVDGYKYYLLIVDHFTRYMWFFPLKLKS
QVAATFTRFKTLVENQFTQVRTLYTDNGGEYIALASFLSTHGISHLTTPPHTPEHNGMSERRHRHIVETGLALLTHAKMP
PTYWTYAFATATYLINRMPTKTLAMKSPYSQLFSEEPHYAKLRVFGCLCYPWLRPYTSHKLDPRSLPCVFLGYSLTQSAY
LCLHLPTSRLYVSRHFEFCENNFPFPSSTSSSAHQDESEPSWVPTVTPLVNDFRSLTAPPAPAMLTCADPLPMNTTSAAP
AHGVATTSTTPPDQITTKTTQPEPPTSSLEQVPTNNHQMVTRAKNKIVKQNPKYSYSAHLVLASLDPHTVTQALKDPLWR
DSVSAEFNNFIRTDTFELVPPSSEQNVVGCRWLFRTKFLPDGTIDKRKSRLVAKGYTQRPGIDFHETFSPVVKAPTIRII
ISVATTGDWPLRQLDINNAFLQGTLDEDVYMQQPPGFVDKDRPEYVCKLKKPIYGLKQAPRSWYNELKRFLLQAGFRNSL
ADASLFFFKDKSVTMYLLVYVDDIIITGSSPTAVRSFIDLLSNRFALKDLGDLSYFLGIEVTRSSSGVVLSQRKYISDLL
HRTLMTSAKPTATPMCSSSSLTLTDGTQLSDGTEYRTVVGGLQYLSLTRPDISFAVSKLSQFMHKPTTTHWEAAKRVLRY
LAGTITTGLVFKRPNSLSLHAFSDADWAGNRDDYTSTGAYIVFLGQHPISWSAKKQTSVSRSSTEAEYRSVANTSAEVCW
VTSLLNEIGVPIPATPTVYCDNIGATYLAANPVFHTRMKHLALDYHFVRNQVQAKTLHVTHVCSADQLADALTKPLPRRR
FESLFIKIGLVNRRPS
>Copia-25_Pru#LTR/Copia 102-4430  [Prunus persica]
MTKDQESAASGSKNDASDPFFIHHSDHPGMVLVSKILNGNNYATWCRSMRISLSAKNKLGFVNGTIKVPSEKTNPETFEV
WQRCNDMVLSWLLNSIEPDIAESVLYSSTAQEIWEDLKERFSQLNAPRIFEIQRTIASLSQEQMSVAVYYTKMKSLWDEL
SSYSDVPACSCGAMKKHVEQEERNSLMQFLMGLNESYSAIRGQILLMQPLPKVRKAYSLITQEEKQRDLGSSQAITEPAA
MAVRNNQRSNSSGRKPLHCSHCDQDHHTVDKCYKLHGYPPGHRLHKSGKGKGKGSSSSANNVASNGPSLQEIHTAMPSLS
EDQCKKIHAMMSDNTNPSHIAPQANTASASSGISELLPNLHWIIDSGATHHITSDSKFLTKRMNTSSMLPVTMPSGETAP
IASTGTLPLNSYFYLRDVLCVPTFKVNLMSVSRLTKGLQCSVIFFPTWCILQDLKTRTMIGLGKERDGLYYLVALASDRT
PSTIQPSCHLVTTPGDLWHRRLGHISSSRLQFLAKHLNCSFSFHNVCDACHFSKQTRLPFGISSISTSKPFSLIHCDIWG
PHKVPSLSGGRYFLTIVDDYSRFTWVFLMHHKHETQGILKSFFSMVQTQFTATIQAIRVDNGGEFSSLRDFFKEQGIIYQ
HSCIYTPQQNGVVERKHRHILETARALRFQAHLPLRFWGDCILTAVHLINRFPTLVLSKQTPFERLYHKTPSYSHLRVFG
CLAYATIVHPTKKFDSRAIKSIFIGYPLGQKAYKLYDLSTQKIFTSRDVLFKEDVFPFSTPTAGPTTIPNTSLPLPISAH
DSSPPQNSNLAPEPTEHTLPISPMSSTPFAPPSADLPLPAPDPLAIPSSLPPTAPPSPAPPVQPTRQSERHKVTNVRLQD
YVCSQVTLPNDVQSESSSSHRTSGTRYPLSNFISYHRYTPAHLAFITHISHSVEPRSFSEANSDPNWQQAMRSELQALET
NHTWTLTPLPPGKHPIGCRWVYKIKHHSDGSIERYKARLVAKGYTQTEGVDFHDTFSPTAKMVTVRSLLALAAASSWPLH
QLDVHNAFLHGDLHEEIYMTPPPGLQRQGENLVCRLHKSLYGLKQASRQWFAKFSEAIQAAGFTQSKADYSLFTCNRGKS
FIALLIYVDDILITGNNLGAINSLKRFLHTRFRIKDLGDLKFFLGIEVSRSKKGISISQRKYTIDILKDSGFLGVRPVLF
PMEQNLKLSDTGELLKDPAKYRRLVGRLIYLTITRPDITYAVHVLSRFMHEPRKPHMEVALRILKYLKNTPGQGLFFPAQ
NDLKLRAYCDSDWGGCPTTRRSTTGYCVFLGNSLISWRSKRQKTVSLSSAEAEYRAMTGACCELTWLRSLLRDLQLPHRK
AAILHCDNQAALHIAANPVFHERTRHIEMDCHFIRDKIQDGSVTTKHVASSQQIADIFTKALGKDDFARMSRKLGVLDIH
SPT
>Copia-25_BRa#LTR/Copia 81-4250  [Brassica rapa]
MSNSGNASAEMALVFNPSDMKSSIISLNMNGITKLTSANFITWRLQVQALLEAHELHVFISDTDQTPEETVTDADGAVTP
NPTVAVWKRQDRLLYSSILGTLSLNVQPVVARATTTREIWTLLHNTYGKPSRAHVKQIKQSLKKSSKGTQSITEYMRGVM
AKADQLALLGAALDHEDLLDYIIEGLSEDYKAIVEMVNGRDVPITLEELHEKLLIRENSLTTTEEINGSSVPVTANAAQT
RQFQQPQQTQRPQYRGQSSTRGGYQGRGRGYLGKCQICGTQGHSARRCPHYSSASPQHQIQYRPGAPLLQTPQWHASPQM
THPQWNPQAHYTTASTSDMSVSPWLLDSGASHHIASDLHNMSLHAPYQGGDDVMIGNGTGLPITHTGSTKLPLSSRPLTL
NNILCVPSMKRNLISVNKLCKTNNVMVQMCPYEFQVKDLRTGETLVNGKASKGVYEWPTESSSVLNNVLVFSSFKTSRSG
WHSRLGHPNSQTLGHMISSFHLPVSSLSSLPCNSCHSNKTHKLPFSNTTLSSSRPLDIIFSDVWTSPIHSIDGYKYFVLF
VDHFTRYTWMYPMKTKSQVSQIFPAFKMLVENRFKSKITTLYSDNGGEYVGLRSYLAQHGIAHHTSPPHTPEHNGVSERK
HRHIVETGLTLLQHAGIPNTYWSYSFAAAVYLINRMTTPVLANSSPFQALFQTPPNYSKLRTFGCLCYPWIRPYGTNKFT
PRSTPCVFMGYSLTQSAFLCLDVSNSRVFVSRHVIFHESIFPFASLLKASTASDTLNISNSSNSASFVPIFSQSSVVPLA
PTATVSTPVSGTSPTTTPASSSPPETTSTTATVTTSTSLPQPSATTTETTNTHSMTTRSKNNITKPNQKYGLAAILAELE
PANLAQALKDKRWRMSMSDEYNAIVRNRTFDLVPRSMATNIVGCRWLHRIKYNPDGTVKGNKSRLVAKGFHQRPGIDFHE
TFSPVIKHASIRLVIGLAVAQNWALKQLDVNNAFLQGDLDEEVYMTQPPGFIDKDKPDHVCRLRKAIYGLKQAPRAWYNA
LRDALISVGFVNSMADASLFVFSSGSLLMYILIYVDDIIVTGNSLLEITKFIKYLSSRFSLKDLGDLSYFLGMEAHRTTS
GLHLTQTKYITDLLAKTKMTEAKAVTTPMCSTQVLTQKGGVSLSDPLSFRAIVGSLQYLCLTRPDIAFAVNRLSQFMHHP
TTLHLEAAKRVLRYLAGTATKGLFFSRNTPLTLHAYSDADWAGDHDDYTSTGAYIVYLGKQPISWSSRKMKGVARSSTEA
EYRSLTGAAAEVLWITHLLQELRVPLKTTPTLFCDNIGATYLAANPVFHSRMKHLALDYHFVRELVQRKFLRVSHISTTD
QLADALTKPLPRARFHDLFVKIGLSTTRPS
>Copia-25_SB#LTR/Copia 53-4363  [Sorghum bicolor]
MSETSQSGGGGTGGAGEGGRVVYPQLTATNYVSWSIRVQAIMEDQGVWEVVEPMEEAPGVMTAAKTAKDKKARMHLLQCL
SDDLLMLVAKKKTGKEIWDCLKARFVGADRVRDARLQTLKAEFDALRMKEDEPIEEYAGKLTAMSVKYSNLGGTLDDAAM
VKKLFDTVPERFLSVVAGIEQFYDLKTLLFEDAIGRLKAFEERVQRGAGRSGARTDSSGQLLLTQAEWEARQKKGGGEAS
SGRGRSPDGSGGRGRGWGRGRGRGRGGGRGEASGRDGAVKKGKEHIQCFNCKDYGHYANRCLKEKKEKGEEAHHARVEDV
EPALMLSVVEEPKVFEEMQSPVQASGRQYAVFLNESKVYPELHLIGGGVSTGNFWYLDNGASNHMTGDPAKVKELNRNVT
GKVRFGDGSAVEIVGKGSVLFKCKDGSQWLLHEVYYIPKLKSNLVSLGQLTEVGHRILLDDDFLEVVDKVSGKLVMKIVR
SVNRLYKVELELADPMCLMGSLEEPAWLWHARLGHVNFKALKLLGEKSMAAGVPIVDHPEQLCHGCLAGKQVRVSFPKAT
SFRAEKPLQLVYVDLCGPITPCTPAGNKYFMLLVDDFSRWMHVSVIRSKDQAVDVFVKYIAEMQNQTGSKVKMLRSDRGG
EFLSNLFEGVCEERGIKRQLTAPYSPQQNGVVERRNRSIMEMARSMLKSMKVPGRFWGEAVRHAVYLLNRLPTKPMGEQT
PFEAIFGRKPHLGHLKVFGCLSHVKNTTPHPKKLADRSHKMMYFGVAEGSKAHRLYDPENKKIMVSRDVIFEEAVSWNWS
EDSTDERVEFQVENEMFDNSNWETVNVDDNAEQPIPVNDDVQSANDSGSVPDELQSPGTQSSVGANADHSLQNEGEQSNP
ELIMDDLSDEEPQHFRSLNEIYENTEVELADSDETEALLAESDEPANFSEAAGDPEWVEAMNSEIRSIEKNKTWTLTKLP
AGHKAIGLKWVFKLKRNAEGEVVKHKARLVAKGYVQKYGVDYEEVFAPVARIDTVKLILALAANRGWKVHHLDVKTAFLN
GELEEEVYVAQPEGFAVKGKEQDVLKLSKSLYGLKQAPRAWNIKLDKSLRKLGFVKCPSESTVYKREAGQATIILGVYVD
DLLITGDEPRGIEKFKQQMAGEFEMSDLGLLSYYLGIEVEQHEDFITLKQAGYAKKVLAKFGMEECNATKVPMNPGVKLD
EDKKGKRIDATGYRSVIGCLRYLLHTRPDLAYSVGIASRHMEKPTVMHQNAVKQILRYVQGSIDHGLVYTKGGNPEVLVA
YSDSDHAADTVGRRSTAGMAFYLNGCLITWGSQKQKTVALSSCEAEFMAATMAAMQALWLRSLLSELTSTPCKAVTMFVD
NNSAIALMKNPVFHGRSKHIDTKYHFIRECIERGQIVVKRVTTDEQKADLLTKPLAAGKLDVMKHLIGVRDLSAQQA
>Copia-29_BD#LTR/Copia 71-4358 via tfasty with Copia-42_BD, 3 frameshifts and 4 stopcodons. [Brachypodium distachyon]
MSTSPTRRVGDLTTPGKASTCCRGRGDGNGGGSSGRRGSNVPVQYLxLTEMNYQLWAGKMKILLRNLGVWDAIDATGPVD
ExQDHGAMTTLSQSVPDDVMMSIMACETAREAWIMIRTARIGEDRVVAARIQSLMRKFDRLVAKEMETVTAFSRRLNALV
GEIRALGEKLPESRVVQCLFAAMPRRFLSIINTIQQWGDVKNMTTAEAVGRLRAYEEGEEVFQEGHGGTSGTSNNDQLML
VTRTLEQLLKGKNGGASSSSGGMKKGANRAQMGRGDRGDRGDRGDRGEGNGKKKKHCKFDKSKIKCFNCDDMGHFASECR
EPKREKANLAERDDDDDELALLVAEIYELANTAVAVTERVFLNEKKVTPKLTGSQSSTWYLDTGASNRMTGCLAKFSQLD
RAVGGTVRFGDGSTVQIQGKGTMLIVCQNGEHRLLTDVYFIPRLKSNITSIGQLDEIDCMTDPAGKVLARVTRSKNRLYI
LPVKQEDPVCLSAVHEEEAWKWHARYGHVNFQALKKLVREGMVRGMPLLDSVEKICDGCMLGKQRRLSFPAQASYRATQP
LQLVHGDLCGPITLATNGGKKYFLLLVDDMSRYMWVILLKSKDEASAAIKKFSAAAELESGHKLKVLRTDRRGEFASTEF
VHWCEELGKKRHLKAPYSPQQNGGVERRNQTVVGTARSLLKSMSVPARLWGEAVCTAVYLLNRAPTKSLVGKTPYEAWYN
RKPSVSHLRTFGCVSPVKKVGPHQAKLDDRSAPMVFIGYEEQSKAYRMFDPVSKKLIVTRDAVFDEGRQWQWRRDTVESE
AVPCPTFVIEYPALSEEEAAQVSVNEPAAENEExQTKTVAPAAPEKQIDAATRARFATVAASPVPLFTETEPSVASPETA
APGFDVTPDAVTPESGPVGPQGKRLIHxIYEETGDCMLGMEEPSSFSEAEKEASWQRAMQEEIKSIQSNGTWSLVDAPKG
KTIGLKWVYKLKDSKGCIVKHKARLVAKGYVQRQGIDFDEVFAPVARIETVRLIIALAAQEGRDVHHMDVKPAFLNGDLQ
EEVYVSQLALSQKVMKLHKALCGSRQAPQAWNAKLDKTLVALGFEKCPNEHAVYKRRKNDSNLLVGVYVDDLLIIGQKST
EVEAFKAQMKDMFSMSDLGLLSYYLGIEVSQSSEGISLCQSAYAQRIIQKAGMENCNACSTPMEPKLKLSKVRTTVPVDS
TEFRSIVGSLRYLVHTRPDICHAVGIVSCYMENPTTEHMAAVKHILRYVLGSLNLGCYYKRKKSTKPQLIGYCDSDMGGD
VDDRKSTSGVIFYLGENPISWVSQKQKVVALSTCEAEYFAATSAACQGVWLSRLLGDLLDEEPKTAILKVDNQFAISLSK
NPVFHDRSKHIHVRYHFARECVETEKISVEYVRTELQLADILTKALGRVRFLEIREKIGMENAGKMQQA
>Copia-26_BD#LTR/Copia 73-4174 via tfasty with CPSC5, 1 frameshift and 3 stopcodons. [Brachypodium distachyon]
MSTSPKRGGDLTTPVAGKYTPPGKRPGDSDGSTSSGRRGSNVPVQYPQLMESNYQLWAGKMKILLRHLGVWPAIDGTGPV
DEEMDHGAMTAISQSIPDDVMMSIMAFETAREAWESIRTAWIGEDRVEEARIQSLMRRFDRIEMQDGENITAFSRRLNAL
VGEIRALGEKLPELRVVQRLFAAVPRRFSTIIRTIRQWGDVKNMSAAEAIGRLRAFEESEEDFEEARAGGGGGGNDDQLL
IVTRVFEQLMQKGKGVSSSGGTKKNNHAQSNRGGRGDNGGSSSDNSGGKKKKHRKFDKSKIKCFNCDDMGHFASECREPK
RERANLAARSDDDDDGPALLVAKICEMVQPVEESEQKVFLNEEKVLPKLRGTQNQNWYLDTGASNHMTGCVDKFSELDKK
VKGTVRFGDGSVVEIHGRGTVLMVCQNGEHRLLTEVYFIPKLRSNIISLGQLDETDCMTVIHRGVMTVTDPVGKVLARVQ
RAKNWLYILPIQMEQPVCLQAVHGEEAWKWHARLGHVNFHSLKKMAQENPVRDMPLLDKPEQICDGCMLGKQRxITFPAQ
EKYRAEYPLQLVHRDLCGPISPATPGGKKYFLLLVDDVSRYMWVRLLKSKDEALSEVKKFQLAAEAEFRHKLKLLRTDRG
GEFTSRDFASYCEQLGVRRHLTAPYSPQQNGVVERQNQTVVGTARSMLKSMSIPGRFWGEAVTTVVYLLNRIPTKSVVGQ
TPYEAWHQRKPTVSHLRTFGCVAHVRKVGTHQTKLEDRSAPMVFIGYEMxSKAYRLYDPATKKLVVSRDAVFDEGRKWCW
NSVEKEVDAVLTPNFIIEDYADEYIEGVAPQIVQSSPENIAATGKLRTPAALEKQEGADVVKEKYKVVAEAMEEEINLIK
GNKTWTLADLPRGQKAIGLQIYLKDSQVAVVKDKARLVAKGYIQRQGIDFEEVFAPVARMESVRLLLALAAQEGWQIHHM
DVKSAFLNGELEEEVFVEQPPGFAVKGKEQKVLRLHKALYGLRQAPRAWNAKLDKTLIELGFQKCPVEHALYKRKKGKSS
LLVGVYVDDLVITGGDTSEIELFKQQMRSMFSMSDLGLLSYYLGIEVKQSAQGISLCQSLYAANILKKCGMMNCNPAQAP
MKPRLKLSKVSNNPLVSSTDYRSVAGSLRYLVNTRPDICFSVGLVSRYMEAPTEEHLGAVKHILRYLQGTLQYGCLYKRG
ESAQLKLAGYSESDMAGDxDDRKSTTGIIFYLGENPISWVSQKQRVVALSSCEAEYIAAAGAACQGIWLSRLLKDLLGEV
SVQVKLKVDNLSAILLSKNPVHHKRSKHIDTRYHFIRECVEAGTVEIEHVRTEDQKADILTKALGRVKFLEMREQIGMTS
VGKAQQD
>Copia-24_GM#LTR/Copia 93-4345 via tfasty with Copia-56_BRa, 69.8% SW:2780, 3 frameshifts and 4 stopcodons. [Glycine max]
MILTPSFFILHSSYHPGIALVSHPLIGDNYNSWKKAMCMALHGKNKYGFVDGSIPEPNLGHSTHALWHRNDSIVSSWLLN
SLSKEMQVSILHCSSAKAIWDDLQERFEQxNDPLIFQLKHELITLQQGSMFVFSFYSKLRSLWESLSELKPSHSCTCGGI
KPWCDFEQMEYAMQFLMGLNESFSTIRGQILSMDPFPSVTKVFSLVVQEEKQKEVGASTSASEVSHAFALKPSSVAHNHP
TNRFKGSSKNSPLCAHCGMLGHTQDRCFKLHGYPPNYKRTSFSLEVKKHSSSSEPPHKVAQQVSVDMSHSPSSSGDSGSQ
FQLTAQQYIQLMNLLESHATNVVIPQGVSSASGMILSTSTSNFLHDCWLLDSGANIHIFCSLHHFRSYQLVSNKTVTLPN
NDVIPIIAIGSVCLTNTLLLHNVSYIPKFKFNLISVSALLTNPNLSISFSQNAFDIxEKQACKRIGKGALIQGLYFLDLK
DTLDCKFTFPVINSHTNSIPCKNAHIWHSRFGHISDKVFKHLNNKVGLHLSPNFSSSNCSVCPLAKFRRLSFPNSNHLSK
LPFDLIHCDIWGPYAHPTYEGRRIFLTLVDDCSRFIWLFVLKNKFEASIYLQQFFTMVQTQFGVSIKCLRSDNAKELALT
QFLASMGTLHQFSCVERPEQNSVVERKHQHLLNVARALFFQSKVPISFWGDCVTTARFLINRTPSPLLQHCSPYNILFKK
EPDYHALRSFGCLAFASTLPSSRNKFSPRVVPVIFVGYPQGYKGYKLYSLDTKNFVSRDVVFHESIFPFQTISQSQVILD
PLLDLVIPIPITNTLPNPDQTSSQSPQPNNHFNHEPTDSFSIPGSDHPHTFPSVILRRSTRHSKHPLYLSDYVISQSQAA
YPIQHHCSLLPLSPPYRTFINHISSVYEPYFYHQLVPYPEWRRAMHEEIQALEANSTWTLVPLPPGKHCIGCRWVYKVKY
KMDGSVDRYKARLVAKGYTQQVGIDFSDTFSSVAKLTTVRVLLCVVAIRNWCLLQLDVNNAFLNGDLFKEVYMELPKGYK
SSNPSLVCKLNKSLYGLKQASRQxFCKFSTTLLSHGFHQSKHDYSLFTIGSSNSLVILLIYVDDIILSGPNIATVQAVQT
KLQSLFQLKILGPLKYFLGLEIAKSNRGISLSQRKYALSLLEDTCFLAYKPSNLPMDPNLKLNLHDGDLLPDPSMYKRLI
GRLLYLTISQPDIIFAVNRLSQFMKAPRVPHLHVVHHLLQYIKSAPGQCLFFPAQNSLNLTAFADTDWAAASCVDTRRST
SGFCVFLGNNLFSWHSKKQPTVSKSSTEAEYRVLSSVTSEIVWLSKLLLHFEVDVPSMMLFCDNKSAISLASNPAHRERS
KHIDIDHLIKEYVxSKVVKLVHVKSQHQVADVFTKALPSPIFGKFIAKLGMINIYSPT
>Copia-22_NVi#LTR/Copia 341-4149 via tfasty with Copia-105_AA, 1 frameshift and 1 stopcodon. [Nasonia vitripennis]
MNYIYCSITNEQLEFVGEEDTALKIMNQFDKMYLKESTALQICIRNKIDRMKLKDYEESSTFFIEFEKIINELKSAGAKV
NEREKLDYMLKTLPESLSYVGDLIDSMQESTCEFLKNKIKMWETRSPNDSGNKKPNVFKAERKDLKCFGCGKKGHLRRAC
TNPxKEANGGMQWTGGAQQQRGRGYGNTDEVMVNADEVMVNADEAEAGNHVQTERVNTMRGTRITKCYQEDGTGTFLTQV
EKKNDRESETVVYNCDRGKIEWILDSGCSDHIINNDLYFSESIILKKPINVKVGDGRILKGTKVGKIITYFMINNKRIKI
TINNVFYVKEMDKNLISYAKVTDKNKIISIGNVSKIYNKNNNLIGIAYKENGLYKINSYVEKLETYANNVEKITQKEKFH
RILGHVNFNYLNTMCKEKLVEGMPKSFENVMLKCGTCIQNKMHNLPFQNNRSGANGILELVHTDLNGPHKNEGFDGSKYF
LTFIDDFSKCALVYTLKSKDEVYNYFLDYINKVENLTGKKIKRLRCDNGREYMNKNMFNLCSEKGIIVEPCPPYVHELNG
TAERYNRTIMNSARCLLYDSKLNIKYWPEIIKAAAYLKNRTITNTSQNKTPFEIFFGKKPNISNLKLYGSKVFVRVPEIK
RQSKWDRKADIGILVGYESVGYRVLVNGKIIVTRHVDFIENENLIGFKGDDESDDESDISINENSESNEIEENVVNENKK
ERKPSNKSDEKIDDQEIELRRSEREKKKPDRYGQSDSYYIYVNIVSADSPKTYEEALQGNDCDLWKEAMNREINCLNKNK
TWQLVEKPKDKKILDLKWVFTNKSDNHKKARLVVRGFQQREVLEDLYSPVAKIQTLKLLLSYCCENGLMIIQMDVETAFL
NGKIKSEVFVKQPLGYSDKTEKVYKLEKALYGLRESPRAWYECFDKYMQKLEFKRSVSDYCLYTKCENSETIYLILHVDD
LLICGKTMRKINEIKTKLSQKFSMKDLGEVKTYLGININYDYKNCKMTMDQSNYIESLARQYNIENSKLFKTPMEQNLSL
ESAQTASSDIKYRNLIGALLYISSGTRLDVSYSVNYLSRFQNSYNETHYKYALRVLKYLYLTKDLKLTYKKNENAEVMDS
FVDADWAGDKSDRKSTTGFIIRLYGNVIYWKVRKQGSVTKSSTAAEYVALSEAVSEIKVVKNLLKDFSINLEKPIKIYED
NSGAIAIAKFGNMTKNSKYIEVHYHFVNECYEKKEIEIVKVDSENNIADILTKALGRNKFENFRMNLKIV
>Copia-20_ST#LTR/Copia 80-4498 via tfasty with Copia-3_ST, 77.5% SW:3965, 2 frameshifts and 3 stopcodons. [Solanum tuberosum]
MVKKIEHDHHLYLTFSDVPGAVQIGIQLIGMENYTLWSRAMQLNLLTKNKLGFIDGSIKRDDFIDDVEKKQWDRCNVMVI
SWIMTNVSKELVSGILFRSNAALVWSDLQERFDKVNMSRIFHLHKAIVFHAQGISPVFVYYSRLKDLWDEFDSIVPPLSC
ECVKSKDYTDSMIRQKLLQFLMGLNDSYSQARSQILMMNPTPSVNQCYAMIVQDESQKALGGEIHGGSDDNDHTALLINR
HGGSGFGGSGSRGRGGRGYGNSQKQQRRGGSYCDYCDMKGHTREDCNKLKHYTYCNMQGHTKDIRFQLIGYPPDWKGKKR
VNMVQTSNGLRGSQRSGDEQYNQHSQFGTSIGNECVPHFTPNQYTQILQLLNKSQITESSAHMAGMFTGTSLCNVVDSNC
LDWIVDSGASDHMVGTTSLLNHGLTVSNPEKVQLATGDSATITQSGNSKLTGGDVIQDVLCVPTFKFNLLSVSKLTKELN
CCALFFPEFFILQDLFTRRVKEIGKEKDGLYLLKAQKQQQIARRKSLIAAKGCENGGVWHKRLGHVPMNVIRKIGMLKNS
IANLILDNCDVCPLARQIRCPFTASNNRSVRCFDLIHPDVWGPYKVCTHNNMKFFLTLVDDHSRCIWVFLLHLKSDVSTI
LKQFLVMVRTQFGVQVKCFRSDNGGEFFNSQCNELFKNHGIVHQSSCPHTPQQNGVVERKHRHILETARAIRFQGHLPIR
FWGECILAAVHIINRVPLSILHNVSAFEIMFEKPPDISYMRVIGCLCHATITHKTDKFGPRATKSVLVGYGDTxKGYKLY
DLEHHIFFISRDVIFAENIFPFIFTSVLKITENKKMIVDPIVPHTEADTWSTEDVQTPQPAVVEDGAAIVPDIAIEHTIP
AAEENVMNQSTRRSTRSSKAPLWQKDFVISGRTKQTSCLYSISDSVNYGHLSRPYQCCIARSSVEVEPSTYQQAMLDDRW
VQAMKDEIKALEDNKTWELVPLPYGKKAIRCKWVYKIKYKADGQVERFKARLVAKGYNQKKGLDYQETCSPVVKMVTVRT
VLSIAAVKSWDIQQMDVYNALLQGDLAEEVYMQLPQGFHQDNGEGIQVCKLIKSLYGLKQASRQWNVKLTNALLAVGFQQ
SHLDYSLMTKKTHAGIVMTLIYVDDLLVTGSSPQLIEEAKQVLKDNFKIKDLGSLRFFLGIEFARNSEGILMHQRKYALE
LISDLGLGGSRPVDTPVEQNLKLITIEFDDLVGSDSDPLLLDVSEYQRLIGRLLYLTLTRPDISYVVQNLSxFMQAPKTS
HMNAAIRIVKYVKKSPGNGVLLSSTSTxSLQAYCDADWGSCVNTRKSITGYLVQYGNSPISWKSKKQSTISRSSAEAEYR
SLASTVAEITWLIGLFETLDMPLSLPVPIHCDSKAAIQIAVNPVFHERTKHIDIDCHFIREKAMKGFVIIHYVCSSEQPA
DIFTKGLGKYQHSHLMSKLGMKNIFISLSLKGA
>Copia-23_BRa#LTR/Copia 74-4474  [Brassica rapa]
MAEKDDSKQIVAKQGETVVLSPYTLFSSDNPGALITSVQLKGDNYNEWAMEMMNALRAKKKNGFVDGTLPKPAEDSSDLE
SWLSVNSMIVGWIRSSIEPKVRSTVTFITEAHKLWENLKKRFEVGNKVRIHQLMEQLTSCRQQGQAVIDYYGRLAVMWEE
LQTYRPPPACSCSAAATYEKEREDERVHQFIMGLDESRFGNVVTAIIEADELPDIGKVYAKVIREEARLNSSKSREVASQ
EAVGFVARREGTMEDLATNRDTRDANGYAARADNNGAGFGNRARDRICSHCGKTGHEKNNCWQLIGYPEWMNERRGRGSG
RGGRGGSNGRGGGRGSAHAAHATSSYSSGASDLTPDQWKAITVIINDGRSSGQSEKLSGKILGDVILDSGASHHMTGDLS
QLVNVKTTLPCVVGFADGGTSTSCQMGDMILTDKISLRDVLFVPKLDCTLISVSKLLKFSNCFALFTDTICVLQDRSSKT
LIRAGEERDGVYYFKDVRVARANRADGGGDRLLWHRRLGHPAFGVFNSLSELSGVGNKACSSPCDVCFRAKQTRDVFHDS
INKTNKCFELIHVDLWGPYRVSASTGANYFLTIVDDFSRAVWTYLLLAKSEVQKVLQRFCAYAEKQFDQSVRTVRSDNGT
EFMCLGEYFQDKGIIHQTSCVDTPQQNGRVERKHRHILNVARTLLFQSNMPVKFWGEAISTATHVINLTPTKLLKGRSPY
EILFGAKPVYESLRVFGSLCYVHRRDRDKNKLGERSRRCVFVGYPFGKKAWRVYDLETKEFFVSRDISFFENEFPFKETS
EKEEEQRNDVMISDEDWVLNVADTNMGSVSINEETSDNEVTGVAPESSEVVSSEKDKQSETEEHVPEAEASREMGRGCRD
KIPSVKLRDYVSYNAQYLKTPHHDLTAPPPKSESSTNVQGNTPYPIKNYISDEKFSPDHKAFLAAITSEREPRNFKEAMQ
QEIWRNSMKKEMGAFEENKTFSVVDLPPGKKAIGNMWIYKYKYNADGTMERPKSRLVALGNRQIKGRDFKETFAPVAKMT
TVRSLLRVVAAKGWIVHQMDVHNAFLHGDLKEEVYMKLPQGFQHSDPNKVCRLHKAVYGLRQAPRCWFSKLTDALKKYGF
KHSYADYSLFVYSRRGVELRVLIYVDDLLVCGNNVDVVNKFKEYLSKCFHMKDLGKLKYFLGIEVGRGEEGFMLTQRKYA
LDLISDVGLLGAKPVATPMEQHHKLSLDKSPFLRDAEKYRRLVGRLIYLSITRPDISYPVHILSQFMRTPREVQWEAAMR
VVRYLKGTAGQGILLSSQGDLSLSVYCDADWSACPVTRRSLSAYVALVGDSPVSWKTKKQKVVSHSSAEAEYRSMAQATR
EIKWLRRLLCDLGAKQVKSSELFCDSKSAIYIAANPVFHERTKHIESDCHQVRDAIQDGVLKTVHVRTTEQVADVLTKAL
GRAQFENLLFKLGVRNFHTPNLRGSIG
>Copia-23_SI#LTR/Copia 186-4112  [Solenopsis invicta]
MEFFHGVEKLTGKDNWTTWKFSSRNLLRGVEGAYEVCIGELVKPAVLAAGANPAEQQAYSAVLQKWDKADRAAAQILVKT
LDPKVLALLVACESAREMWIKLHAIFEQQTKLAAHAVQSEFFGFSMAPGDDLVSHIAKFEALVLRLQQLNKKPDDSSLMV
RLLDTLPESYESFRQSWWARPEDKQTLEELIAVLTADDTRRNVYKVKQEKTEALFAAANLKNKNGATSTRVLERKPADTK
KKKVPKCFGCGEKGHVRKDCKKDKGKKTSSNSNSSSTSGGDFAFVMEVENAECEQDVWLMDSGATNHYCLHREWFVTYEV
FAKPLTVLVGNNSTMLAVGKGRINTEALVNGEWLTCHIDNVLHVPDGRRNLMSLSLILDKGLNMRVNRKRCEFVKDGVVR
LCGERYGMLYKLHIRATSNTPCEVNLASAESLQVWHERLGHQDKRHVTKFLRDRGVTVITDDSFCAACVEGKQQRTTFKS
RTQRSTRAGEIMHADVCGPMEEQSLGGAKYFVCFTCDYSKFRIVQFLKEKSEVVATVEELLKFVENQCGRPLRVFQSDGG
LEFNNEKMKKLMKANGVQFVITNPYSPEQNGCAERTNRTIVESARTMLLAKKLPKILWAEAVNTAVHLLNRSGPTGESGK
APYEIFTGKSVNLHQLHVFGTSCFVQIPKERRHKWDAKGKPGVLVGYSQDIDGYRVWIQGEKTVVRSKNVTFEPEVGGKT
VTVVSDDCEPKTKAVEPVESHPGRVRADEMPDESEIDAERETQFAGGKQTSNNVPVVEYQGRLRDRSTLCPPERYVEMCV
VELEPRSYKEAMESVERESWKEAMREELQSLAENSTWELTELPSNRRAITNRWVFKVKRNPNGSINRHKARLVVRGFNQR
PGVDFLETFSPVVRFDTLRSVLSVAATEHLKLAQFDVKTAFLNGNLSEDIYMTQPEGFADGSNRVCKLKRSLYGLKQSPR
CWNYKFKEVVMGLGMTESSADPCLFVRSVNGNKLLVVLYVDDGLVAATRQSDIDKFLRELRSRFKITIESFGCFLNLQIA
QDADGSITIHQQGYAETVLRRFKMDGANPVSTPIDQYIHQNTADVVLSSAPYREAVGCLMYLAVATRPDIVFAVNYASQF
LEKPEMKHWELVKRILRYVRGSSSTGIRYSTSLASGELHVYSDADYASDPKTRKSVSGMISMYCGGAITWASNRQKCVSL
STTEAEYVAACEAAKEAVWLKYLFEDISPLKSVPTLIVDSTSAMKLSKNPEFHKKSKHIDVRYHYLRDQVVNDRLCMTYV
CSKQQVADICTKPIPRVQFCYLRSLIGMY
>Copia-23_CQ#LTR/Copia 143-3478 via tfasty with Copia2_AG, 2 frameshifts and a 160 AA deletion.  [Culex quinquefasciatus]
MDLARVTKLGDTNYETWAFSVKALLRRLKLWKYVEPGTPPAAPSAEWSTGDEDALTTIQLVVEESQQSVIRDKVTAKATW
EALKERHSKLRLGQMIIIQIATQNYQDGDSIETYLSSIEKLYARLDNAGVRMQECIKVGLILRGLPPSYRPLIMVLEARD
EEDLTLAMVKAKLLDEANNFQHQQARGQAEQALKVKTRPKVLVRYRCGKAGHRKADCDESDDEGSKKFSKKKPKEKAKQx
KCCIEGNMARPPFPAAAVKRSKEILDIVHSDVCGPMTPTPGGCKYYMTMIDDHSRYTVVYFLKAKSEVEERIRQYVRFVQ
TQFGRKPKVVRSDRGGEYTGNSLRKFYEDEGIKAEFTAGYTPQQNGSAERKNRTLNEMGLCMLLDAGLDRQFWAEAVNTA
AYIQNRLPTKAIETTPFEMWFGEKPDLQHMKIFGCHAYVWTPSQKRKKLDAKSEKMVFVGYSSEHKAYRLLNPKSGKIVV
SRDVKFLELTPPSKKSEAEEIDQPEEVPVHLNAANDESESDDEFFGFDETTDESXRRVWRSTTERSCTRSGWXNEDVAAQ
EEEPALLQEEQLDQNNSPVAQPVPLGPRRSTREGRGVPAARYEGSIGIAAGSTAEPRTYDEAVNSVESVQWKTAMEEEMA
AHRENGTWKLTQLPTNRRDIGCKWVFKRKEDETGEVARFKARLVAQGFSQQYGSDYDQVFAPVVKQVTLRAVLTLASKRQ
MIVRHIDIRTAYLYGELQEELYMRQPPGYSNGDPSVVCRLXWNNRIDTALKSIEFTRSSADQCLYTRGTICVLIYVDDIV
VACHTSEEYESIVKLLRQSFKVVELGDIKFFLGIHVRKGDGHYVLSQKSYISKTLARFGMDQCKTSKIPMASGFLQQREE
DGEALLNPGQFQSLIGVLLYIAVNTRPDISIATSILGRRVTTATTADWTEGKKVLRYLKGTLDYELHLGGKQNLQFECFV
DADWAGEASDHKSNTGFIFKLGGGLLSWGCRKQTAVALSSTEAEYVALAECLQELMWLRKLMVDLSEPLPEPMVVYEDNQ
SCIALTAADRTSRRSKHIDTKYCFVKDLVNEGVVAVKYCSTDLMDADLLTKPLGAVKLQHFRSAIGVKCVDVEE
>Copia-29_ST#LTR/Copia 127-4701 via tfasty with Copia-73_ST, 76.7% SW:3889, 4 stopcodons. [Solanum tuberosum]
MVDAAAINSVIGPFSGTAGAHTRVYAHHPLHLQACDTPSSSLVSIQLTESENYSLWSRSMKIELLGKGKLGFITGQYSKD
KFAVLLHDLWEKCNAIVLSWIVISVSRELLSGIVYASSAQQVGTDLKERFDKVDGSRIFYLHKKIATLSQGMLSVSSYFS
KLKELWMEFDSLMPCPGCACEVSKTYAAHFEYQRLMQFLLGLNESYNQCRSQIMMQDLAPCVNKAYSLVMAEESQRILGK
SNVVNADNHDLVNDAMAFFSNNKSHVPRSGSSSYSGPNPSSGSGSRSYQRSTKDLYCDYRNWKGHIRATCYKLHGYPPVW
KGKKRTPPGSIPAANLVGANAGTIxLRQYSANTGQxSTSSALGMSHSGSFSPTTSFALMSNRQSPLAHFDPQVQQHPHFS
PQQYQQLLHMLDQENEKAKANTNCDNLMASGRMHSVNNNKWIIDSRASQHMVHNENLITPQVSLQNNSCNKVHLPTGALA
RVTHIGSSQVLGGTEISNVLHIPAFHYNLLSVSKLTKELNCCVLIYPNFCVFQDLSNGTVRGTGRLENDLYVVHADSQLI
SxDSLKSTQDSVHVANAVSSSQSCSLDMSLWHQRLGHVPVSTIRKLSCFKPFSSSSSTICTVCPLAKQARLSFPLSNTTT
TACFHLLHVDVWGPYRVPTHDNKRYFLTLVDDFSRYTWLFLLNFKAEVIVALTQFFAMVKNVFSTQIKVLRSDNGYEFFN
SQVTTLLHTLGIIHQRSCTYTPQQNDVVERKHRHILDMAQSLRFQAGLPLRFWGECVNTGVYLINRLPSPVLQGQTPHDL
LYKGPLVLDHLRVFKCRVFATEVRKVDRFSPRSVPAVFVGYSTLQKGYKRYDLATKDFFISRDVVFKEAVFPFKHMSSAC
PPLFPVLQFLEETPLLVSDPSPVENTAASSSSVSGFDFPADSSLDAGNVLGDPCSASLTPCETVPLRRSARSTKPHIWMQ
DFLTAQPKASCKYPVSNHISYAHLTASYGAALTAYSSISEPTSFEEAVVQPKWVEAMQAEISALEDNHTWSITELPPGKQ
PIGCKWVFKVKHLASGAVERYKARLVAKGFNQKEGLDYTETFSPVAKMVTVRSVLVVAATKHxLVFQMDVHNAFLQGDLP
EDVYMVVPPGFCRQEGSNKICKLHKSLYWLKQAPRQWNLKLTEALVQLGFVQSHYDYSLFTRTMGKELVVVLVYVDDLLV
TGSCNSLIEQTRNDLKLKFKMKDLGELKFFLGIEFARTKERYVMNQLKYALELISEMGLSGAKPVHAPMDPNVRLTSIEY
DKHVHRSEVTPIDKPLKDIGRYQRLVRRLLYLTTTRIDISFAVQVLSQYMHAPKESHMEVTLRVVKYIKTSPGLGLFMPA
QSSELLTAYCDSDWGTCLQTRRSVTGYLVKFGDALISWKSKKQETVARSSAEAEFRSMTSTVAEITWLIGLYKELGVNIK
QPVQLYCDSKAVIQIASNPIFHERTKHFDIDCHFVREKLQQKMIKTNHVSTRYQLADLLTKGLWKATHLHLMSKLGVKDL
FQPPA
>Copia-36_Mad#LTR/Copia 5637-9726 via tfasty with Copia-64_Mad, 3 frameshifts and 5 stopcodons. Pos 4400-600 contains an inverse, more damaged copy of another copia polyprotein. [Malus x domestica]
MAGSTSFELRTPIFNGENYEFWNIKMHTILKSHGLWELVEIGFTIPETSTVVVVADEKKENDAATETPTNVAKIIMKDAK
ALGLIQGAVTDQIFPRISNEETSKGAWDILxQEFRGDKQVRNVKLQGLSREFEYTRMRDDESLSTYLTKLFDLMNQMRGY
GEELSRERVVQLLISLPRSYDSICAVIEHSKDIETLEIQEVVASMKGYEQRLDMHVENSTKKAFASLNVGSKFQKPSGFS
GTQKSRKDWKNKGKKWDNKPNLVSKHNNSHDSNKTACKHCDKLHYGKCWFEGKPKCTNCNKFGHETRNCNGNKMVQKANY
ANQVDDMGTLFFACNSVTQVKVNNTWYIDSGCSNHMTGNENLLMNVSRNLNARVKMGTGEVVSVAGIGTLVIKTKMGKKT
HTRSDSGAGLEENLLNVGQMLEHGYYLLFGGNAVCIYDSWNLNGLFAKVQMTGNRCFPLTMMPATLLVLKASVSHCTQTW
HKRLGHLNTRSLLQLREQEMVHGLPHLEDSKNVCEGCMLGKQHRDEFPRESVWRAKFPLELVYTDVCGPMQIASNAGNKY
FILFIDDCTRMTWVYFLRCKSEAFEYFKRFKTMTELQCGHKIKYLRSDRGGEFMSSEFSNYCNVSGIQRQLTMSYTPQQN
GVSERKNRTMVEMAKTMLHEKGMPYxFWAEVVHIVVYLLNRCPTRSLDKMTHFEAYSGRKPGIAYLKIFGLVCYVPSNLR
HKLECNSHKCVFVGYGTSEKGYKVFDPITNKIILSREVVFDESDRWDWNVSSEKYFDTSITTDIAEYEPTQGLEVQDDII
LPEITSDISQESLSSNVDGSNSQIDLSQSYDFTPKKWRSLYEVFAQCNVCIMEPQSYEEAALDLSWMKAMQVELDMIEKN
NTWMLVDRPSSKPVIGVKWVYKTKLNLDGSIQKNKARLVAKGYSQKPGIDFNETFAPIARLDTIRTLIALAAYKEWQLFQ
LDVNSAFLNGVLKEEVYVDQPQGFTIEGKEDKVYKLNKALYGLKxAPRAWYDEIDSYFTNPSEAILDTKVENSGILIVSV
YVDDIMYTGSSDTLLENFKNDTMQHYEMTDLGLLHHFLGMGVVQTKKSIFIHQKKYAMKLLEKFGLKSCKSVGTPLVANE
RLCKNEGSEVADESEYRKLVGSLLYFTATRQDIMFGASLLARFMHGPTKKHMGTAKRVLRYIQGTMDFGIEYVKGKSALL
IGYCDSDWSGSVDDMRSTLGYAFNLGSGVFSxASIKQNTVALSTAEAEYISVAEATSHTKWLRFVLEDFGEEQVEPTMLI
CDNTSAIAIAKNLVFHxKTRHISRKFHFIRDVIQEMEIELVYCKFEEQMADILTKALPKEKFNYFREMLGVKSAASLEES
VDV
>Copia-36_CQ#LTR/Copia 100-4170  [Culex quinquefasciatus]
MSQAGSFPALERLAGRENWADWKFAMQTYLEVEEFWTAVKPAKKADGTYEAVDAVKDRKARGKIILHLERHNFCHVKDTK
TAKEAWEALEAAFEDAGLTRRTGLIRKFGSTHLEDCSSMEEFVNTVMSTAHQLRGIGMVIPEELVGGLLLAGLPESYRPI
IMALENSGTVISGDSIKTKLLQELPVTSAGAAYSSRKQERRPEQKRPPRPTGDSKGPKCRRCQKFGHIAKDCRSKDSNRR
DGDAWCTVLSTVNEDDHWYFDSGASNHFAKSKETLDNLENYSGTVVAANRGAMKVVAKGSMKLWTTVSPDEKPIEVNDVQ
VIPDLSTNLLSVSQIVKRGNTVTFDKGGVKVINAAGAIVATGSMVKDIFRLNQAVPKPQALAVTAAESLELWHKRMGHLN
FDGVRRLKNGLVSGVHYNESAVEKCKVCAMGKQTRLPFSKAGSRASDLLELVHSDICGPMEVQSLGGRRYYLSFIDDKSR
RIAVYFLKQKSADEVYDAFEDFRCKAERQTGRKMKILRTDNGKEFTNKKLQVLLSRLGIRHQTTVDYTPEQNGLAERGNR
TIVERARCMLFDANLPKTFWAEATGTAVYLANRSPTKGHDKTPEEVWTGRKQNLAHIRVFGTPVMVHIPKQKRKKWDAKA
HECILTGFEEDIKAYRLWDPIAKKLIKRRDVTFLREGGVPASTPVSAKQPMVIRLDFEEPIPCVQEEDEPPVQLEEAEPV
VDDVPQDPEVIAELENDNAEVEVEVEDAEPLAGPSCDVTPIALPSRPLHPPGSPALLRSGRERSLPGKFKDFILSSKGLS
LPSFTANSGYDEIVSDSETSGDENSDDTLVGLAARRQPPKGRDPVTPAEAMKRGDAKLWKDAMDDEYRSLMENGTWELVQ
LPPDRKAIGCKWLFKTKEDEKGNIVRHKARLVAQGFTQKFGVDFDEVFAPVARQETFRILLTIASRRKMVAKHVDVKTAY
LHGKLEETIYMKQPAGYTTGDVNTVCRLKKSLYGLKQSARVWNHKIDAVFKQLGFSQAKADPCLYVRKTGRSTAYIIIYV
DDMVIAAETEEEFEAIFNGLQQHFTVTNLGDLKHFLGMEVERAADGFKLNQQKYIDKMASRFGLEDAKKSKIPLDPAYLQ
QKEENDQLPNNTDYLSLIGGLLYVAVHTRPDIAVSTSILAQKSSRPTQLDWQEAKRVLRYLKGTSDHKLHLGSTGAGLEM
YVDADWAGDHRDRKSNSGYLVRFGGGLVSWGSRKQSCVALSSTEAELVALTEGCKELIWIQMLLGEFGIKINRAVPVYED
NQSCIKLVDGNKIEKRTKHIETRYFYVRDLKEKKMIDLQYCPTEKMLADILTKPLQNLRIKMLREEIGLLPDHVEEE
>Copia-36_MLP#LTR/Copia 46-4589 via tfasty with Copia3_XT, 64.7% SW:1423, 3 frameshifts. [Melampsora larici-populina]
MSTNPFDPPSPADSTNTYNESEASSSDRTVNQEFFDSSTLPDSVNPLERVPSEVIMSTPDEGVVSLFGNAIQKYGQQLTT
ALFKFKITDNLEDGNYASWSRVVFGNLDNLELHHYILTKDYKDPDLSAAQILKTKKILVNYILNHLDKSNNTQAVNHLTD
PEDSLSLVYDPFSLWSFLKERHFLINSQRLASISKTLSTVSIHRSDTISTFLDKFESLFIEFTRYGGKMDDTQSAIRLID
AITTLPPSIVEFIHATVSPLTRKDVIKYLRDYDTRQNSFTTEATREVNHIESTPFISANSAVRSTRVMCTETVCHGPHPP
DKCWSKPQNFRERDDFLARRRARGSWNHRGRQFSTRPSNSNSSQVRGMQRVDTPSANSVADSIQMLSLNAEFDSITSSPE
ETNHTSFELITSEPEANSLESINSDIIWALHDTGATHHMFNDKSLFVKDSLKPVEDKNRRLKLAGGDVSLAVDSIGKIQL
KAGDNSVFELTECLYVPELRKNLISGGTLKRKGVREVYNDSEPTCFALVKDGLALFNGVILQNGLMNVKITPVSSSVHRD
QSSSSINSSIVHRRLGHLSDQYLRTMKNHESVDGIDVLEDNFESCEICSLSKNTKLPFNHTRPRAIKFLENVHVDLSGIY
RVNGFNNENYFILFCDNYSCYRHIYGLTSKTKEEVFETFKSYIAVSERQTGCKLKQFTLDRGSEFVNNLLGPYLIELGIE
LHLTSGYAPEENGVSERGMRIVNTKARCLMLQSGLPQKFWFLSCRAAVFLTNRTVTKALNDFRTPFEVWHFRKPTISHIR
TLGCQAFRLIRKELRESKYSPVSSEGVLIGFEQDNFNYLIYDLEDNKIHTSHHVTFNEDVFPFLKLKSHQATSQSLVKML
YSDDEDEMIEVCELADKAKDSDDYRNPDADRLNTGPSSSELEDKIPEHEPIPKVASKNKFENLTMRKSTRNQTQVNYKGM
CNYSEFEDEDFCTQVLFDGLPQCFNAVLVSQPDPKSFKKPMLAGDSPSWKAACDKDMSSLLKKEVWTLVKVPTHKPAIPG
MWIFRIEDNPDGSIKYKARFVALGNTQVEGEDYGETFAPTGKPTSLRLLLAMAAIHGWEVHQMDAVTAFLNGILEEEIYM
EQPEGYVVVGQEDKVLKLNRSLYGLKQSPKIWQDDVTQSLIALCFEQCTIDPCIYIRSNEEEQLFTAVYVHVDDMAITGN
DSITFKAEISSIWEMEDLGLAQTIVGIEINRRSPNIYTLTQTKFAITVLKRFDMLESKSASTPLTPNLKLYRATDEECKD
FSLLGHNYRSAVGSLMYLSQCTRPDLAHSVGVLSQHLDRPGLQHWNAALQVFRYLKGTMHLGIVYSGEDNLTVSGQRSFS
YPNSYCDADWAGDQNTRRSTTGYIFILAGGALSWKSRLQPTVALSSTEAEYRAITEAGQELLWLRRMMELFGCKDLNPTV
LQSDNQGAIHLTNKSIFHGRTKHIEIQYHWIREIVKNGDLILEHCPTSEMVADLLTKALGKQQFIRLRSKLGIKM
>Copia-37_CQ#LTR/Copia 42-5382 via tfasty with Copia-36_CQ, 1 frameshift and 1 stopcodon, after deletion of the apparent insertion 751-1892. [Culex quinquefasciatus]
MNPQVNGQVPDNPQAPQQVPHHSNMLSLPSIEHLTGRDNWSTWKFAVETFLELEELWEVVKPTLNADGTLPPIDERKCRK
ARGKIILLLDPTVYVHVKGVKTAREAWSKLEAAFEDAGLMRRVGLLRKLITTTLTACGSMEIYVNEIVSTAHQIRGVGFD
VSEEWIGTFLLAGLPEEYKPMLMALENSGLAITGDSIKTKLLQEMHSVPEKTAFVGRKRIRRSRSPAQPKDGQLSNRPKC
KRCHRHGHVARDCQSRTGSAFATVLATNEGFEDDSWIFDSGASEHFTKNRSLLTGERAASGIVMAADKQPMNIVATGTVL
LKPKCNSESLPIEINHVKFIPSMSNNLLSVSQIVRRGFEVRFTNRGVRIEDADGDLIATGRHDVKNGLFQFEEKERDVAL
TLAASPPSMDVWHxRMGHLGNSSLKMLRNGLVSGVQFKDAVADNCVVCAKGKQTRLPFPKKGHRANDILELVHTDICGPM
EETSVGGSRYYVSFVDDKTRRIAVYFLETKSESEVLHAFDEFRTLAERQTGRKLKVLRSDNGKEFVNRSFQKRLRELGIK
HETTVEYTPEQNGMAERVNRTCVERARCMLFEAKLPKSFWAEAVSAAIYLINRSPTKGHNLTPEEAWSGRKPDLSHVRVF
GIKAMAHIPKQKRKKWDEKSKETILVGFDEQTKGYRLYDPVKKSIFKSRDVIFIGEAGRPETAKPAESSNPKRVRTFVSL
EFDNISEPVAEPIVQEMPLAANPEVPDAERDDVPEQPAALAHSGPEVVPPATEPETSEDEESESEAEFFSQVESSVGESS
DDSDVTILALPPRKTLYPPESQVLRRSGRERAVPGKYKNYVLPSKGLPSHHSTDNPSSDDFAEAGPSSVKHGLKASKGAT
KKSTDPRTVAEALRSDEADLWRTAMGEELQALMDNNTWELVQLPADKKAIGCKWLFKTKRDEHGRVVRHKARIVAQGFKQ
KYGTDYDEVFAPVAKQVTFRVLLTIASRRNSVVKHVDVKTAYLNGELEETIFMRQPEGYTTGDERTVCRLRRSLYGLKQS
ARVWNRKVDSTFKSIGFQQSKSDPCLYMRRQNDTFAYILIYVDDMVIVTQTEEEFNAIFESLHRNFTVTNLGDIRHFLGM
EVERSDAGYKLNQATYIRKLVQRFNLEQAKPSKVPLDPGYLQQKEEECKPLPNNQDYLSLIGGLLYVAVHTRPDIAVSTS
ILAQKSSKPNQQDWNEAKRVLRYLDSTINHKLQLGATNEELQMFVDADWAGNSRDRKSNSGVLLQFGGGLVAWCTRKQTC
VALSSTEAEFVALAEGCQELIWTRRLLEEVGEAALGPTRVNEDNQSCIKLVESDKIERRSKHIETRYFFVRDLQEKGTIR
LQYCPTENMLADVMTKPLARIKLEKLRSAIGIRPDQFEEE
>Copia-36_PIT#LTR/Copia 1236-6296 via tfasty with Copia-106_AA, 60.9% SW:1221, 4 stopcodons. [Phytophthora infestans]
MELKPELVERLKKKKAKKQAVSLINSVRRVHTMPTTSETRRLFENLALRSPHTSEGATGASREKRSVSPIYSPPSCASDD
DKTEERKAEPADDVSVPMTPQQLQLQSSQSTQLTQVEQPSQAVQGVQPIQGMQLTQVEQTTQAVQGNQPSQSIQSAQAMQ
TVQSTQPSLSMQPVQTMQAMQPMQLLQPMASTQHEVGSSYGWQIPTIDAAQHQWGGGHFLRPLPTWDALFYSLGQGFSSG
LQRPTLEPGHRGGPQVISSVPGDNYEGRYAEPQGYQGLEGRLYDGGSYGGLRGSHGPSFGGLFEGEWPGLREARTNQPVD
YGRGYTSLFGGGDWRLPPRENVGPPRSSLPCYSPMRGPPGPRYQGRSPDRGRSPYRGRSPDRRYSPIRGRSPPRGNLRPS
GSPPRWRSPPRRRAGQRYSLPRGRSPLRGPQSRGMSSPRGQPRRDGPVQRRRGERSRSPRRNQMSHYGPQSEEGRQGSNS
TQGNETGPRSGPTQGTETSQGQGTASQGQTFSVNAVGRDENMQSVERNFPEWILDSGSQANICGDLSLFTTLREDKTSRL
DFANGTTEHTTVSGSVLLRVINQATGELEDRLLDDVVYTPNAKVNLISMGYLQTTGNYKLMCSMDQKTAWMSKPGTILKF
EMRDNLYRLRSEKATGVMVMTMAKQAVEDKKTMELLHQRFGHLHMALLQVMADKMDLGVKLNTKDLNTYECIACVVSKTK
SMSHKRLPARSTKPLETLAMDICTMNVETASKATMFMFIVDVATRYKWAYLLEKKSQATWFILKLLKKLRTHHKDYRVLH
LRSDQGGEFAGAELHEYCVEHGTVQQFTNAYSHQENGIAERANGIVLPRVRAMLTATHLPNMLWGEALLHMVTTLNMLPT
KMLGMTSSHEKLYGRKPPLSMLRTWGCIAHVRVPPESRQRKEKLEPRAQMCLLLGYSDSTKGYKFLDLLTCQVKTAQREN
CRFHEEFTVDGAYVKQLLENAYLDTLHVLPEKLPVVRIKTSIETYTTESSGTVPMSKAGELLEVExAVDGEQTSSGSAEH
DDSSSVEQQEVEKSADSQVAPEKGPEPVKVTKRRKRKTRKKPVKDDTGFAIQKPPVEPCLKRPRRTQKANVRLSDYVVGQ
VIAHGMDVDIPTTYKQARKSKFWTQWRAAMLAELASLKKHKTWRLVAKGVKVITCRWVFAVKRDERGRVKRFKARLVIHG
FxQQFGIIYSETYAPVIRFETIRAAIYFAVQRGWEILQYDVKTAFLYGDLDEMIYMEQPPGFQIDGPSAVCELLKSLYGL
KQAPNVWNRTLHAKLVTLGFERTDSDxGLYALKEEGEVKLLLTVYVDDLLLMGPRDLCIKIAAALQETFELTTLGTVKYL
LGVEILLDRPSRQIIYCQKQYVLEVLKRFHMSDCNGCTTPEATTLSKATVPATTDYLPYRELVGALQYLVNSSRPDIAHA
TRHLGKFLASYDHTHYAQAKRVLRYLKATCDYGLVMDVPEGTTANVRCYSDADYANDPVDRRSISGYVNTLDGNVISYAP
RKQEINSLSTCEAEYVAMAEATKDVLWLAGLCDELAWKTAHNHCCWGGLKREEPFSCGTPKTWGRHSQILKTTxANKYHM
LRRNVELKLLTTQHIGTEQMIADIMTKPLAVVKFSRFRQAMKVLPVVSSDDTTTSTKPAASTTAAIAAATAETASPAPTA
IAAIRKE
>Copia-35_MLP#LTR/Copia 82-4230 62.7% sim to Copia-113_AA, SW:1455, [Melampsora larici-populina]
MNHDQPTPSSPTSTSISTSISPYISPEMSNHNSATKAKDISPLKHDWRRWSPLMLAHFMEWDLDAIVDGTEEEPAETASE
AIKINYIKRRKKAAGFISRKLSPENRALVINAANIKDPKAIWDALVKLYASTKARNRARILRKFLNLKCTDNSLESFLTE
YRRITHEMTEVSFKIDDDILAHMLLFKLSPRYHSTRDLLAHTAETADSLLTLDQVFEHLQQLVLDYQPGSAPPPAALIAE
QRAVSYERCLNGTHNPLTSHTEAKCFQLHPELKPNRNNQSSNRGAATATISGTVLTTYVFNATLTGKPVLDSGASQSMFS
LRSSFASYRPFHATINVANGQQINAVGIGTVTGSHCGKPVSISDCLHVPELQTNLVSMVALVRKGCTFNFSQDSSFNVLV
DSNVVLTGDTKTGVMEINLDLGKSHQLSLTASTKVNPAILHRRLGHPGRIPFEKAFPGIHYPDSCEPCILSKMHRLPFQS
HLPNACDRLSVIHSDLSGLISPTSLGGGKYYFKITDQKSNFKFVYILQSKCQTFSQFVQFKSLVENQTNLKIKTMVNDNG
GKYTSKQFSEFLKHEGIQMNFTAPFTPQQNPIAESGNRTTTERARALLKQSNLPLVFWAEAVSTTVYLENLTPIVRDNYV
TPYENWFGKKPTYSHLRVFGCLCYVHIGKERRSSKFSDVAKRGVFLGYQGTMHNYRIYLLDDHRVIYSHDVIFNKEVFPF
SDPTVLASFSDKFGSHDNVVLEELNSEDNFEIPLAQSPIHPLASDEDLSVSTSIPISSSSPQRDSPDPPTPTPTPPPTPT
RESSEPILPDELPNTRQDTQPSRQEESSTNRPSYSMVPATVPAPKAITSSIDPANILTSRRRANLANHLTSEPHSYRDAM
KRPDSAEWKQAIEKELNALTEMGVFTEVELPAGAHALGTTWAFRKKTDQNNVIIKHKARLCAQGFSQIPGLDYNETYAPT
GRAASMRLALSICGIDDLEVRLMDAVGAFLNGIPEEVLYIKIPQGYTPKLTGKNIVLLLNRSLYGLKQSPRCWYNMVKSF
FLSIKFSPSKSDPCLFISDDPDWRCFVHIHVDDMLVMGKNTERFSQLIQTRFKMEDLGECSFYLGMRLERNCEARTITLT
QDKYILGMLEEYGMNDCHSVTTPMIPGTYLLPASDEEHSAFLATGLNYNRAVGLLNYLVLCTCPDLAFTAGQLAQHLKKP
GQEHWNAFKRVLRYLQGTYQDGLVLGGGSVELKVYADSDYAGCPATRRSTSGYISKLGNGCVSWRSRKQPSVSTSSTQAE
YRAAYEAAQETVFLRRILGDLGYLQTGGTTFLCDNQSSLALQKNPLFKDRSKHFAVHLHWIRKQVEAGIITPTYIPTKEM
LADICTKSLPRPQHEYLKNLIKA
>Copia-32_GM#LTR/Copia 45-4694 via tfasty with SHACOP3_MT, 79.1% SW:4579, 1 stopcodon. [Glycine max]
MASPFRNDGAFPSSHLSHLISVKLDDKNFKQWKQQIDGVVRGHKLQRFVTVSVIPHRSPSTSDLNLSEVNDAYLDWEQQD
ALICTWLLSTISDSLLPKLVDCTHAWQVWTEVHRYFATLLTTKARQLRSELRRLSKGPLTIESFMERVREINESLISIGD
PVPLRNLIEIVLDALPEEYDPIVATVNSKEDLSSLDELESYLLAHESRLEKHRKMILTEPVSVNLTQAQPSDSSSPMEPS
SPATESFPTGTSHVTAHAENNNYNFRGGRSGRGGGRFGRGGGRFGKSQCQICHKSGHDASICYYRYSQSASMPFSPQRAP
FNPFLMNARPVYAPSFGYASPRPAAPRPSPPQAFMASSDPTFSNQWWYPDSGASHHVTPDSSNVSDAHSVTGSEQVFMGN
GQGLSINSIGSMNFTSPNFPHKPLTLHSLLLVPHITKNLISVSKFAQDNQVFFEFHPSFCLVKSQDSSEVLLRGVVGADG
LYKFQSPSSQVSKFKSLSSLNSSVALGSNNCNPSTSCNTLLHSNAQSDCITDCTPSVSMNTSNVSCVNSPLVHATTFTNS
QSPQHSIVPNIIPTSKYALWHTRLGHPHYQALAEVLKTCNIPIPPKSLAEFCTACCLGKSHRLPTSLSTTVYAQPFELVV
CDLWGPAPIQSLGGYTYFLTCIDAYSRFVWVFPLRLKSDTLTQFVQFKTMVELQFNCKIKVVQSDGGGEFRPFTKYLNNL
GITHRFTCPHTHHQNGIVERKHRHIVETGLALLAHSNLPLKMWDHAFVTAAYLINRMPSMSLANQSPYFKLLHKVPDYSH
LRVFGCACFPFLRPYNAHKLDFRSQECIFLGYSTIHKGYKCLAATGRIYISRDVLFNETRFPYSILFPSSSSATSTSSPH
TSSAWSISAVPVSAIPLTQVSSVPTTPTTSVSLSSPMSAPINTNEVPTTPTANSPIITPSNDASPASENSSLHSPITPSS
PTPITSDIAEANTISPSSIPATSSPLSPVPTPQQPSIHPHNTHSMQTRAKSGITKPKIHPTLLLTHMEPTSVGQALSSPH
WFQAMKDEYHALLKNQTWTLVSPSVSRKPIGCKWVFRVKENPDGSINKYKAKLVAKGFHQQAGTDFIETFSPVVKPVTVR
IVLTLAVTHKWPIQQIDVNNAFLNGTLEEEVFMLQPPGFEAADKTLVCKLNKAIYGLKQAPRAWFDKLKGSLLHHGFLAS
KCDPSLFLLHTASLTIMVLVYVDDIIITGNSASFITALIKNLNTDFSLKQLGKLDYFLGIEVTHLPNGSLLLSQTKYLTD
LLAKINMLNANGMPTPMVSTSKLSKIGSPVVSDPTQFRSVVGALQYATLTRPEISFSVNKVCQFLSNPLEEHWKAVKRIL
RYLSGTLHHGLLIQPASPHQPLSLLGFCDADWASDPDDRRSTSGACVFLGPNLISWWSKKQxLVARSSAEAEYRSMAQLA
AEILWVQSLLQELKCRLLTPTILCDNLSTVTLAHNPVLHNRTKHMELDIFFVRDKVLSKNLIVKHVPAQDQWADLLTKPL
SAVKFLPLRDKLRVINKLSLLDASSVSKGE
>Copia-32_DPu#LTR/Copia 42-4274 via tfasty with Copia-30_DPu, 70.2% SW:2775, 2 stopcodons. [Daphnia pulex]
MTSPTLKDVGHIAKFDGKNFPLWKFGCWVILEHHNLVPIVDGTEKKPVEVxxSLFLSYNFSDRCKTKSLFAVPSQVKNAE
RVVTNQAQIDAWVKQDILARYYLTATIETQQQRSLINCRTAHEMWTRLSVQYLQNAAEDQHALRQRFYDYKFQPEHDVMA
HITAIETMATHLNDAGATVDPIQVMTKIVCTLPRSFENFLSAWDNVPANEKTMQLLTSRLLREESVKKRWSSEDNVVTEN
AFAARNPPTSSRTPNPTGRNASRRGRGRRGGYNKLADRECTYCTGPSRFSHTYEVCRVRMRDERRKRDEAETSKGESSFT
SIFQQDDCYLSSPRTMALMWSHWIADSGATAHMTDQRQAFSKFEPFLSFSSYPVKGIGGTKLFAHGQGSIDIFTIVSGVQ
KKVTIKNVLFVPNLGASLISITAATSNGMTVIFSGEKVIFSRLNKIEMTGSRVDKLYLMDIEVHTEHQNNQEETAYVADP
KKSTIEIWHQRLAHLNYKTILEMSSLDLADGLSLPRECSIPEDICHGCAYEKMQRKSFTTGRSRATYIGQLIHSDLCGPM
QTPSLTGARYFLLFTDDYSGWRQVYFLRQKSETPDKFKEYVTLLRSETSNFVHALRTDNGGEYCSINFRGWLSKKGIRHE
SSAPHCPEQNGVAERANRTVVEAARSLIHAKGLPIKFWAEAVACSVYTLNRVPSKASKSTPHQIWHKAKPDLTNLRVFGS
TAFVHIPAAERRKIDPKSVKCIFIGYCSTQKAHRFWDPVACKVKVSRDAIFDENRQFDFFHPVANPIEGEPNLDNPPICN
EMETASSIPPIHNEKESTQSNQSGMYMAPPETNHPSEDLLQPPEPAPLATQKRVHFHPSANPMSDDTMSIPATPPEEPNV
RRSRRLQGHKALHSQMASHDSPYEPSSYADAISSPDAPLWKAAMLEEYQSLIKNDTWTLSKLPQDRNTIKTRWVFTVKPS
SFGNPPRYKARMVAKGFTQRPGIDYSETFSPVVKMDSLRTILSLSAARNLDMTQLDVKTAFLYGEISEEIYLNQPEGFVT
PGKEREVCKLNKCIYGLKQASRVWNQHFNKFLQDFGLNPSASDPCVYSYQKGEEFTIVAIWVDDGLVCSNNKESTTRILH
YLSTHFEMRFGVVDYFVGLKITRDWNKMSVYLSQPEYINKVIHRFNMEECQPKSLPADPNSRLMSKNKSSPEENTDGENF
PYREAVGSLIYLAVTSRPDISYAVNQVAQHSENPNRSHWAAVKRIISYLKGTSKLGIKFDGRCSKTITGFTDADYAGDLD
TRRSTTGFVFLLNSGPVSWSSRRQPCVSLSTTEAEFIAASETVKEAIWLKRLLTEIGNNGDKPIPILCDNDSTIKLVKNN
QFHQRTKHIEVRHYFVREKQEAGEIEVSYVPTQDNLADIFTNPFPIHGSVI
>Copia-33_BD_env#LTR/Copia 11663-13033 via tfasty with SZ-37_env, 2 stopcodons. [Brachypodium distachyon]
MEIDRLPEDLLKPAPKKRRSGLAKDREDRRLSQMLVRSQTMSEDNRELLSPKPKMPISSDREKVYFKALKNAELRLVRLE
NGLKYKEERSAEDWRFWSFEQQDYYVQILLPRIHFAKMKYINDEWFAINRQSGVMTAANALNNMHLLKFVQTxQNSNDEL
ILQFYATFGRKVCRFEDNSKGYNIYWMIDGDRHSCTSRHVKDFLGLAEFDGQPKIHEExAASDENIAILYEEGFSGAYGG
LAGLKPEVKVLNDILRFTLSPKQGSSSEIAGLHLNLLLAIFKGEKKDFGDYILQTITHASVDRVRALPYAPHIMKIILQL
SEKRFELEHQHKYFSLKPQDPEPSVLPPTSVSDHPESSQPIPSQPQLVQALHPSDSQYETSSGTDGSLKNLIVKLSRKIE
DQQDLLEKKAALLKNQQVLLKKLVSREEKTSGLLQDFLTKHYPDVLKPEDSNATSSQ
>Copia-34_SB#LTR/Copia 53-5714 via tfasty with Copia-37_ZM, 2 frameshifts and 1 stopcodon. [Sorghum bicolor]
MSNGDGPPPMFDGNDFPYWKTRMESYLEACDVKCLKAATKGFTLRKEPPPLTPQEQENEKWNAKAKNHIFRGLCKEVFNR
VRSHKTANELWKELCALHEGTKSECEERYHLVMNKLNTFEMLPKENANEMYSRLNVIVEELNGLGLTQMSTADVARKILC
VLPIEKYGHIVTVLHQGDLSTATPTTILGKINAHEMYMHMNPQDGSSSAKKEKKDLALKASHKGKAKKIEVESSTSSDDD
ASIALLVRRTTKMLKKLNKNGVNFDSKKKKFFTSSKRKPISEMDCYNCGELSHLAHQCPKPKKDKYKKKNKEQDDSSDDE
KNDKKQYKKKGGKKKEHYKKKNGKAYIVGDWLTDIESSSGDSSENESDDEKVAAIAIDAPSPSSSPPSTSSTHLCLMAKG
DRKVQSEDESSESDSEYESPSYDELVKLLNKYTKVIRKSRCENEKLELENETLLAKLKSSDELRDQNEIMTTKLKELKLS
LKELKEKHDKLESVHDELITRYRAMKEELTTLKANYDNLEIAYELANDEKHVATNNVAKLDVATSCDDLLVESTSKCVDC
KGKKVVVAESYEDTIKLKDEIVMLKKELQEQAKHKAIVIESLDQDKKLAYENKLLKEENQYLKLGLMYDKQEEDETFILD
ELASNNDPIIKKLTQENNKLKKEKEHLTMGLAKFTRGKDLQSELFMNTVMKMDKSGIGYKAHQTKLIKSLATHDQASKPK
PKRCFECGQEGHFAHECKAPLPPPLPKHARPFAFNAHYIVRKDKCGKVKVSFMGPPNKQRPKKIWVPKQLVEKVKGPKQM
WVPKSQAxSLVCKVNYKTGGSHWVIDSGCTQHMTGDPRMFTSLDEDVNNQEKITFGDNSKGKVKGLGKVAISNDNSITNV
LYVQSLSYNLLSVGQLCDLGFECLFKKKEVIVTKEDDNEVIFKGFRHNNLYVVDFSSNEVDVKTCLFTKTSLGWLWHRRL
AHVGMGTLKKLMKKELIRGLKDVTFEKDKLCSACQAGKQVANTHPTKAYLSTSRVLELLHMDLFGPTTYASLGGNKYCLV
IVDDFSRYTWTFFLQDKAEVASIFKKFAKNAQNQFDVKIKKIRSDNGKEFDNTNIEEYCDEVGIKHEFSSTYTPQQNGVV
ERKNRTLITLARTMLDEYNTSEKMWAEAINTACYVSNRLFPHKFLEKTPYELLNGKKPDVSFFRVFGCKCYIYKKRQHLG
KFQRRCDIGYLVGYSSKSKAYRVFNHATKMVEETFDVEFDETNGSQGASDNLDDVGGEPLRDAMKNMPVGDIKPKEDDDD
VQVIEPPSTSQGPQDEDKDVRDAHEDTQVTHEQAMAQAQDVDAPQPTPQVAPRRTSHLLQYHSQDLIIGSPSRGVTTRSR
HALFIEHHAFVSLEDEPKTIEEALRDADWIIAMQVELNNFSRNQVWTLEERPNDARVIGTKWVFRNKKDDQGKVVRNKAR
LVAKGFSQVEGLDFGETFAPVARLEAIRILLAYASSHDIKLFQMDVKSAFLNGYINELVYVEQPPGFEDPRYPKHVYRLS
KALYGLKQAPRAWYERLRDFLIEKGFKIGKVDTTLFTKKMNGEIFICQVYVDDIIFGSTNEDFCKEFGDLMSKEFEMSMI
GELSFFLGFQVKQMKEGVFISQEKYTQDLLKRFKMMDCKPIKTPMASNGHLDLDEGGNPIDKTLYRSMIGSLLYLTASRP
DIMFSVCMCARYQAMPMESHLIAVKRILRYLKYTPCLGLWYPKGARFQLVGYSDSDYARCRIDRKSTSGGCHFLGRSLVS
WMSKKQNSVALSTAEAEYIAAGACCAQILYMKQTLLDYEVVLDKVPLLCDNESVVKLANNPVQHTRTKHIDIRHHFLRDH
VAKGDISLENVGTENQLADIFTKPLDEARFCLLRNELNVLDLSNFTKR
>Copia-34_BD#LTR/Copia 54-4421 via tfasty with CPSC4A, 2 frameshifts and 1 stopcodon. [Brachypodium distachyon]
MTKYGDKQDGGSPATPSGQTSPQDGGAMVVHRSGCDAGFQSTTFPVLIRSNYGEWSILMKVILQARFLWDAIETGTEIIG
DERSAMEAILRGVPKELVPALGAKKTAKEAWDALKSMRMGSDAVREAKAQGLAKEFEAFKFWDGECIDECAVRLATLVTW
LAEHGETLSEGKVVRKFLRAVPRKFSLVAYTIESTVNLDTTSLEEISGRLKAAEERLEQDGEGDAGGKLLLTEEEWRARS
KRREGDGSGSSNSGGNKTRGGKNRGKGKAAAKPAAAGNSHAAADEPAKDQCRYCGKLRHWARDCRKKNKGEAHLVQPVAG
NRDQDEPTLLMASATLCIQGPMHEEGHVFLNKKRAEAHLRRGDEGCDGRWYLDSGASNHMSGDRAAFADLDQSVTGKVKF
GAGSLVDICGRGTVVFAIHSGDHRALTGVYYIPRLRTSIVSLGQLDESDCDTRIHRGMMTLFDRRSNVLAQVPRSKNRLY
VVRLEIARPICLAALPNDDAWRWHARLGHQHFQALQRMHSGGSGGMVRGLPHVDHVEQLCDACHAGKERWAPFPQQAKFR
AAEPLELVHADLCGPITPATLQGNCYFMLLVDDASRYMWITLMPTKDGAAQAIKHFKAGAEVQADRKLRTFRTDRGGEFN
SNKLAHYFADHGVERHLTAPYSAQQNGVVERRNQTVVGTARSMMKAKGMPSFFRGEAVATAVYILNRSFTRAVDGKTPYE
AWHGDKPSVEHLRVFGCVAHAKVTKPGLKKLDDRSVAMVFIGYEQGSKARLYDPNTKRVHVSRDVVFNGGASWDWGELSD
ASTGMSFTVPVMVNGAAATSSRAEDGGSTPTSQAPSPAAVSAANSAAAGTSTPAARSAVPGTPTFAAKSAAAGTPTPPGT
SPPLSPAPATPDNEFVTPPPVDHDHLDADDDGEAVHRYRRITDLFGASATVPEKAERLLLSAEEEPVTFEEAEPHDAWRK
AMLDEMHSIDENNTWSLVDLPPGQRPIGLKWVYKLKKDAAGNVVKHKACLVAKGYVQRAGVDFDEVFAPVARLDSVRLLM
AIAAQQSWEVHHLDVKSAFLNGELAEEVYVVQPPGFIKEGEDSKVLRLHKALYGLRQAPRAWNIKLDDTLLQLGFQRSPS
EYAVYVRGEGVRRLLLGVYVDDLIITGASMAEINSFKQQMKESFSMSDLGRLTYYLGMEVKQDASGITLSQTAYAGKLLE
KAGMADCNPVQVPMEPRLKLSKKSSNPPVDASMYRSIVGSLRYLVHSRPDISFAVGYVSRFMEAPTTEHYAAVRHLLRYV
AGTKNFGCRFAKDGEPxLVGFIDSDMAGDVDDRKSTSGVLFLSGGGGGGGITWQSTKQKVVALSSCEAEYIAAATAACQG
VWIGRMLGDLLSKEAETATINIDNKSALQLCKNPVFHDRSKHIETRYHYIRQCVEDGKIAVDYINTTDQLADMLTKPLAR
PKFEELRGRIGMIKVN
>Copia-9_ST#LTR/Copia 148-4673 via tfasty with Copia-6_ST, 84.0% SW:4690, 1 frameshift and 1 stopcodon. [Solanum tuberosum]
MANNGGQDTEIGNGRVPGHGNTTPMMPANQVVDYNHPLFLSPADVSGINLISFQLLGIENYAVWSRSVRLALLRRNKIGL
VDGTCRKNDVSEELGGQWERVNAIVLSWLLNSVSKSLLAGVAFATSAQGVWSDLKERFDRLDGSRTFSLHKEIATLQQGT
DSVSVYFTKLKGLWDEYETLMPSPGCDCERSRGFIEHLNRQKLYQFLMGLNESFGQARSQILLVNPVPGVNQAYAMVVND
ECQKLTSSDVNIGLNSICSTGVDPLAMYSRIGGQSNSQGYNRFKKNLGLICEFCRCKGHSKEQCYKLIGYPPDFKSKRKM
NNGAGHNAYMTGSEVNTTRKDAYDGMSNDPLFNCGSTHDKGQRSQVGESENHLQGCTFTKDQYSQILKMLNQNQDCGNLS
GSAAHGVQANSAGKALLVSEHSEIWIIDTGATNHMSSNIGMLTKESLVNVKDPKPVSLPNGEVAYVTHTGSCSISPRSVI
TNVFHVPEFKYNLLSVSQMTKELGCSVTFFPHFCVFQELYTGKVREIGKEEAGLYLLLKNLTQGQVQFQSCLAEGKRKEA
KQLSEEEVNVWHKRLGHMSSHALSRLFSVSPEVVNKALNKCSVCPCAKQTRAVFPNSSIKSTDCFDLVHLDVWGPYKQST
FDGNRFFLTVVDDYSRMTWLFLLKNKSDVCVILxKILQFVRTQFGKVVKKVRTDNGSEFVNFVCTKMFEDRGIIHQRSCP
YTPQQNGVAERKHRHVLEVTRAVRFQGNIPLIYWGQCVLAPTYLINRMPSKVLGRQSPYEKLYGNKPMLTHLRVLGCLCY
AKVLSESDKLASRSKASVLMGYSETQKGYILLDLASQRFFVSRDVRFQESVFPFISRLSTDVAGPFVNDMSLEMLNFDWS
DSVPKDVNIRSECEEERDMPEEPEHDLVLDQMIEGPDPKVHESQENVEPVVTRRSTRGVHPPIWMKDFVSLNINKDIQFP
ISDCVAYNHLSKPYQTFVASTSMMHEPATFAEASKDPKWIEAMKAEIHALQSNNTWELSELPAGKTAIGCRWIYKIKYKS
IGEVERYKARLVAKGYSQKEGIDYKETFSPVVKMVTVRTILALAVARKWHIHQMDVYNAFLNGDLQDEIYMTLPQGFTSQ
GEKKVCRLVKSLYGLKQAPRQWNQKLKEALQKLSFSQSQHDHSLFTRKTSKGTTIILVYVDDILVTGSSLELIKETKEAL
QQVFKMKDLGELRFFLRIEFARCEAGMVMHQRKYALQLIAEVGVSGAKPSGTPMDVNVKLTSKQYDDHNKENQGDKLVDP
SVYQKLIGKLLYLNMTRPDISFSVQTLSQFLQQPKKSHMDAALRVVKYIKKQPGQGVLLSSSSGTEITAYCDADWAACPT
TRRSVTGFVIKLGESMVSWKAKKQTTISRSSAEAEYRSLASIVAELVWLVGLLRSLDAEITLPVNIYSDSKSAIQLAANP
VYHERTKHIEIDCHFIREKLQQGLINISYIPTQSQPADVLTKGLNRVQHELLLSKLGVLNIFAPPSLRG
>Copia-9_Pru#LTR/Copia 79-4254 via tfasty with Copia41-PTR, 83.9% SW:4501, 1 stopcodon. [Prunus persica]
MATEKATESFIQPAIPRFDGHYDHWSMLMENFLRSKEYWNLVESGIDAPAEGVVLTEQQQKRVAEQKLKDLRVKNYLFQA
LDRSILETILEKETSKQIWDSLKKKYAGSERVKRAVLQTLTRDFETLQMKSGESITDFFARTLGIASKMRSNGGTMEEVK
VVEKIMRSLTPKFDYIVCSIEEAKNVAELRVDELQSSLLVHEQRLNRTTASEEQTALKASIVSESSSSRGGRGRGRGGRD
RGRGGRGHRGGGRSGHRDDSKSSHVFKRDDDFEEKGTYHFDKSKVECYRCGNFGHYKNECYTKLPKEKGEKSNFVEKKKE
EETLLMAFHALTKTDQETWYVDTGCSNHMSGCKSSFINLDESFHTVVSFGDKSTVKVMGKGDIQIKTKNDFIETISNVFY
IPDLKTNLLSAGQLQDKGYRITIYKGEWEVYDPKRGSIAVVKMSSNRLFPLKIKTLQACLFAKEDDPWRWHYRYGHLNFN
GLRTLHQKGMVTGLPDITPPSKMCEECITGKHKRDSFPSGKAARAQxILEMVHSDLCGPINPISNGNKKYFISFTDDFSR
KTWVYFLQEKSEAFEAFKSFKALVENESEKKIKTLRTDRGGEYCSKEFDAFCKEKGIKRQLTTAYTPQQNGVSERKNRTI
LNMVRSLLVKGRIPKKFWPEAVLWSVHILNRSPTFSVKNMTPQEAWSGLKPAVDHFRVFGCIAYAHIPDEKRKKLDDKSE
KCVFLGVSEVSKAYKLYNPVTKKIVVSRDVIFDEDTMWNWSENRSVQQQIPVYDDLDNEEVAAPETQAQQPPQLEVQSSQ
QFEEERYNLRDENSRKRPAWMMDYDVSYSSSDDENAHFALLVDSDPITYTEAVKEEKWREAMDNEIKSIEKNQTWELTDL
PKGKQTIGVKWVFRTKLNEKGEVDKHKARLVAKGYKQKHGIDYKEVFAPVARHDTIRLVISLAAQNSWQIFQLDVKSAFL
HGNLQEEVYIDQPPGYERKGEEEKVFKLKKTLYGLKQAPRAWYSRIDAHFAKLGFHKCPFEHTLYVKTEEEGKILMVCLY
VDDLIFTGSDAKMFDEFKKSMMMEFEMTDLGLMHYFLGLEVIQTTAGNFIYQKKYAQDILNRFQMDDCKPFGTPAEHGLK
LCKDKGGKEVDSTFYKQIIGSLMYLTYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGVFYKREDGSGFV
GYTDSDYAGDIDDRKSTSGHTFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMSLRKIFEVLGDVQKGPTTIYC
DNMSTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDGKIVLEYCKSGEQVADILTKPLKQPAFEKLRSMLGVCSFQSIEQED
DYVMVPALEKLRSMLGVCSFQSIEQEDDYVMV
>Copia-10_ADe#LTR/Copia 84-4673 61.8% sim to Copia-1_AB, SW:2166, [Auricularia delicata]
MSFTREEQYKIPVLEAKGGNWFAWKTRMKLQIKTKGWSTYLDATLPPPTHPAKVAGYNKAATEADSSKLALFESELRGWT
SWMEKDGKVQLHLTQGLPDSLMHEVSKHETAQSLWAWLVREFETKSISFAVTLRKQLNTTICAEKGNVRDHLDKMDKLKE
KVDAAAAVPISNDDYEAMVLASLPEKYASFAATIKASAARAKQPLDVSEIISAVRDEYDRCTMDRESRTIAEKPKDDVAL
SAKHKDKKPKAKGKSKKDLSSVQCFRCDKFGHYARDCPDRDNGGDDDEEASSSKKPKSKGKGKDTAKVASTKEDKVFAWL
ACPSAESWGDLDAEPDAWFDGFASDAESEGTDAPRDPSTWLDDVPDNLEHDEHHLDDETVEIGAAALVVAQRQFVSHDAE
ILDTGASRHVSALRQRFVTFKAIEPYPITAADGKDFFATGIGEYRILLLKPDGSKSKILLKDVLYAQAVQCTLISVGRID
EAGMFVMFGGGVCKIYDDGQQLIGVVPKVDGLYQMVHSVAERSLYAVAGKEPLTWMELHRILGHVAPQAAKTQYQRGGLL
GVKINPKSKLYDCESCTLGKITAARIPKQREGPISKTFGEKWYSDIWGPAPVATLGGRRYAEIYVEDSARWHEPFLYRLK
KEAEQNVLDFAALKDRELGKVWKTWITDQAGEYKDEKTNKKLREMGIKHVYTTHDTHQQVGVVERFNRTAMERVRACLHA
AGLPKFLWGECLKHVCYVVNSLGTATLGGLSPHEKRYGIPRDISGMPEWGAPCYVFDPASKLATRGERVYWVGYDDETKG
HRIYWKKQRKVTSEPAVRFLKKEIPEGTEPTDVTDFFWPEEGSGDEGSSEDSEESGEGEKGDSDSESDPARQSAVQEPPI
TERPKQETPETPKQIPRTSEPPMAPKKQQPAKPHAARPVKQPMLDKVDEVNILEGERERKPSRYVRSIESGTGTATGLGR
DPALPVGIQVPPKVKLAVASAQDIFGSESFATALVATTANQEGLEPSTILEAQKRPDWPKWQEACLAELDAMKERQVYEF
VKRPKDRRVVGSKWVFRVKRDAQGKIDRYKSRLVAQGFTQEPGVDYVKTTSPAACQESIRLILAAAAHFDMELHQIDFDT
AYLNGILDEEIYMEQAPGFEDPDHPMKDWVCKLLRALYGLKQAGEVWYQTLCQAMRDLGFKRCESDLSCFVRHLKTTMLI
TAVSTDDCILAVPRGHTKTLEAFKSDIGSKYKIKDLGEAHWLLGIEITRDRDARILRLSQGSYIDTILRRYGFEDVRPLS
TPLDHQVQLSNEHCPKTAEEFAQMKNVPYREMVGAANYLVRGTRPDLAIALSVLSQFLENPGPAHWKALRRLYAYIKGTR
DLKLTYGESEHGLVGFSDADGMSQWHRHAVSGYVFLWNGGAISWSSKKQDIIALSTTEAEYVAQVHASKEALWLRSLVSE
LFGPLTEPTIVYADNQGAIKLGNEYQYHPRTKHIDIRYHFVRWVIAEKKVQLVYCPTEDMIADALTKALPSLKVKHFAHQ
LGLRSSDAQA
>Copia-10_Mad#LTR/Copia 88-4461 [Malus x domestica]
MGDEKPTDVMPNASDPLTLHHSDSPGLVLVSKPLDGHNYGQWSRSMRIALSAKNKLGFIDGSIKAPAPSDAKFSIWQRCN
DMVLSWIWQSVNAAISSSILYCKTASAAWKDLEDRFSQGNDSRIYQIRQEIAEYRQRQSSVSDYYTKLKALWDELGSYHE
PIACDCEGSKTLAEREEKERVMQLLMGLNDSYSTVRGSILMMSPLPDTRRVHGLVLQHERQLDVANSREPQSGVHAMQAS
RSTMAKGSSSTGGSTSRKLLKCSYCDGDGHLVDRCFYLIGFPVGHKWHGKNVTPKNKRTSHVXHNVEAPQPTNTVTDTTR
ATTTNGPMFTTEEYNQIIAMLRNGNGNGQQLANATGIYTSICNIAQHDPHSTLYWIVDSGATDHISRSPPTHNKTDTCHD
FVGLPNGGQAEIKGIGSVKLSHDLTLDGVLHVPKFQVNLLSVSKMTRALRCFVIFFPDFCVVQDVDTKRTIGLGKHFDGL
YYLTPSQNPHLANHVRHTTDLWHQRLGHPSSAPLHSLSTSVPEIMFESKHMCEICHLAKQTRLSFPSSSIKSIAPFDLIH
CDIWGPHKIHTHSGARYFLTIVDDFTRFTWVHLMRFKSDTQSLIKSFFSWVKTQFHYDIKILRAXNGGEFLSMHNFLETN
GTIFQHSCTHTPQQNGVVERKHRHLLNIGRALRFQANLPLKFWGESIQTACYLINRLPTPLLCHQSPYERLHGQXPNYSH
LRVFGCLCYATNLLPTHKFDARARRCIFLGYPLGQKGYRVYDLATKQFFTSRDVXFHEHIFPFAHSPPEHQNDLPVLPIL
PDAQFSNLPIFPPSAPPTDPPTLHPATYXDHNPINHLPHAPDSPIPDASPSSPNLTPPLQSSPTDHFNPSPPSSSPPPPP
PPLRQSTRPKHPPAYFKDYTAYHAALLTPTTASSSTSGTRYPLQRYVSYAHLSPAYRTFVSNVSQLVEPSTYEQACHNPH
WVVAMATELQALEANQTWSMVSLPPGQRPISCKWVFKIKYKSDGTIDRYKARLVAKGFTQREGIDYKETFAPVAKLTTVR
CLLTVAAVRNWPLHQMDVQNAFLHGDLHEEVYMLPPPGSRRQGEXLVCRLHKSLYGLKQASRSWFQKFHSAICXIGFTQS
RADYSLFTQVTGGSLTIILLYVDDLVITGNDDAAINNLKQFLNSRFRIKDLGPLKYFLGXEVARSKAGITICQRKYTLDI
LEEAGLLGVKPAKVPMEPDLVLLPTGSDPLKDPTRFRRLIGKLIYLTITRPEIIYAVNTLSQFMQEPKRHHLDAAHRLLQ
YLKEAPGQGLFLSAQSKLNLIGYCDADWARCPITRRSVTGYCIFLGNSLVSWKSKXQVTVARSSAEAEYRSMAAITCELT
WLRYLLRDLHVTHPNPARLFCDNQAALYIAANPVFHERTKHIELDCHTVREKIQRGEVRTAYVQTGEQIADMFTKPLRAP
VFRSHLGKLGVXDIHTPT
>Copia-10_ES#LTR/Copia 44-4846 via tfasty with GmCopia11, 62.1% SW:1179, 2 stopcodons. [Ectocarpus siliculosus]
MSTSSANIFKQGYVPFNGNPNEYHRWSSLFRSIMYETGLGEVMSGTEKAPEAPVDGTADAVAAYETKKRDFKQKNGRLFT
RLDLATSECAEGFQSAASLVVGSFNAVYPEEWGDGRAAFLALEAKYRKTGAFRMQELQQQLGALSVTAADKYDPARAIQE
LRRISAELEALGDKVVSTRKTHTFLNALPDQQYGQFKAALVCEQSRDDNSDLNLDFERVAHRATAFHSLQIRGKDTTNDD
GSGSHGRALNTTVHGGAREFRKHGGRGRNRRGNGGRNADGNNSSNGNSSSGGTNSNGNPSGGRGARSAQGARGKDRGNQN
SGGGRGRGQQNGQDRKRRCRYCHNSTEHQWQNCPLRLSNEAEDAKEQANVSQESTTTQAWFTQVRGGSKGLEDFSIIIDD
CPRVQEVPAATQAEKRVAEYPQVPEVPAAAKPEERAAGYTQVLEAPAAAKPEERAAGYPQVLEAPAVAQPKACAAGDTQV
LEALAVAPPEERADAVGDVQALKTPGVVTDDEPAAVHVQVEEAPGATETVAFTSVFQVKEQVKSLESTTVFIDTAASSHM
VWAESPVATHVGERYACNVQVEGSCGQSNATQKGKLKFGLRNDKNETIPVSLEVLLVPDLGANIFSVGALEEKGVLCDLM
STPPALRGGQHAFPISKEIPRMYVVNIIVDDVSLDGSAKLFRTKVDAHLWHRRMGHCNPRALQLLADKEHSGVKFNRNIE
SGDCEVCSAGNSKKSSHPPSDRPRADARLELVHVDTWGPHSEESYGGSRRAVMFTDDNSRMRWGIPIKTKGEAAEGLETV
VKEVADPLGICLDTVNCDGGAEFKGRFDALAQSLGIKITTNAPYVPEGNAIAERGFGIVIATTRRLLLGAPHLPGRLWAE
AFKTAIYILNRTPTEALDGKAPLEVWEGKPLGSLKHMHEFGSVCFKHEEARFRPNKLAARAKKMYLVGYNSKSRSYRLWD
PTEPSKITNSGEVSFCEKDPRDVVPPKVGADPLPEPGRIIYQPGWEETIDEEENQEEQKDDGGMEPTPQQQEPGLRRSGR
NPVPRTVMDLHTAEKAYERMEYSLLTGSVLGATGTGSPGEAGYMPPDPANYSQAVSGPDADAWKESMRDEGRSLVEHDVF
DWVDLPEGAQALPAKYLFKVKYNQDREPVRLKSRIVVQGFHQADTGEDKAAPVASMETVHLFVASAAQNGFVLKQADIKT
AFLHARVPKNAKPIFVIPPKGFECSPEQARQVWLLKAxLYGLRLSPKGWNGTFHEYLMEIGFVRSPADPCLYSLNAGEVL
LLVYVDDILFSGSDEDLVMTVIEQLKERFDTVYLGDAKFLLGMAIERNIDAGVILFSQNTYANAVLDKFGMADASSAKTP
AEPGPISIVEEAVLSPEDTTYFRSAVGSLLYLSRGSRPDITHSVMVLAKSMAKPGPRAMVKLKRVLRYLKGTTSIGITYR
EDADDGDNLTAYVDSDHAGDLDNGYSTTGVVLYFAGGPVEWTAKKQTVVAISTVEAEYVALxKGCVMVIQFRNLLESMNQ
KQEQATVVFEDNSGAVSLSRSAKITPRTKHIDVKFHHVRSLVEKEVVDVEYIETNLQRADILTKSSGAVKFLQNRLLLLG
V
>Copia-9_CPu#LTR/Copia 158-5545  [Coniophora puteana]
MSNLQRAYTREDTEPEETIPVESTTVDMATLLGDLPQYAPESSGSQPRVLFAPLPAEEIFHESFHDDDHSDSLFSRNRNH
RNRSPFSSITLRRGQTSASSPSREHGSDSELSLTNTHTSNTQSSQPRRRRNRNSRSQHNDRQHTASNNPSHERNEQQQNA
PSPHVFPLTTHPLDRHGYPANTHSPRDQPPHQQPQEPAPYSRQTQVPAYPEQQQQVTAPTYQAAPTYHVAPSYQPAPVYP
SAPPYQPAPTYPSAPVYQPPAPQQPYQAPAPYHAPAYGQQTYAAASHAPQYPGGPQLPYQQQFAAPYAGQHGYVPQQRFA
TFASAASLISGGKLELHHASHIDELDRSKGNWMPWDTDIRQHLGTNEYDERWLDGHYPRPDPSTDPAYVARWNRANNTIL
NFVRGKVSPEEKHYIATCRTIYEAYLILKDRHERLGPIAQVLQIRKLFTTFFSKDVRLGTTARNLRDLSHSIMAMGPMTE
GRLFAMGLMNALSREFPIISNELAHQLSTVQPNADFDPSYIMNRLDIEQSAMDAHKFSPDDSALAAASKPASTTHARSPC
ENCGGFHPTRYCRAPGGAMEGQRRDFSTNPDARRRPPQRDHAPSRDQPRHSSTSTSSGGRPQAPGSFRRITIKSTGRIML
LDDSTGEAFHLDDAGPSSSTPTLPSSGGEFAGLTSDHLDDGDAVELDGPDLAEYESYFLRVHGSDLHAGIDWQSHAQSPH
SVFWTTSAPNQNVPTVIDPNATPFILDSGATTHITCDAGDFYSMSVIKPRPITGVGGVKVHARGIGTVRLSFGKGLHLDL
DNVLYVPDASVRLISISTLAKAAHYRVTFDDDGCSIRNRSGALVLSGTMTASGLYRLRGSSPVANHAYVASRVPSLAVWH
RRLGHANYQSVLDLARQRNATGMSIDLSSSPPKCEHCILGKQTRSHVPKVREGDRAQRRMGRVHVDLMEHPGAPSASGHL
YIMDIIDDFTRYSWSIPLKSKDAAFPALQAWEQARELETGLKTGEFVSDNGELKSADLRAWLESRGTQHKFTAPHTSAQN
GLVERLHLSLMNKARAMRLACDVPVSRWDEFVLTANYLHVRTPAKALEGKTPYEAWFGRKPDLSHLREIGARAFVLVQNQ
HNPKVLARSVECVLVGYSLDSKAYRCYNRASRKVVTSFHVRFIESHEEGMGAFRPGVTVGDPTPPDASQQTGENTSTPTT
DDENPADPPPDEARKSQFRRSSRTTKPTEKRAIAEGLRYVSRLDEVKEAISAFMVDWDLPVEDDDADETYYVDPTTIAEA
LASEHREEWLAALREEFDSLKERGVYVLIPRSDVPAGRKIMRGRAVFKLKHDEHGNPFRHKVRYVCRGFEAVFGQDYLKT
TSPTARLESFRIVLHLAAALGLECEQVDVKTAYLYGELAEDEACYMEQPKGFEEPGTEGMVWKLLKGLYGMKQGGRVWNK
TMHDAMVSWGYTRLSCEHCVYFREVDGDITICAVHVDDFCIAGSTQSTIDRLKTSMKTLWQISELGASKFCVGIAIERDR
KARTVSLSQTALIDKVLAHFRMTNANPVSTPMETNLQLRRMPHSELDASTRAELAKLPYRSLVGSLNYLAVGTRPDISFA
CQFLSQFLDAYGHEHYAAAKRVLRYLKGTRELKLVLGGPHGSSLVGFTDSNYAACLDTRCSVTGYCTSLGTGVVTWSSRK
QPIVTSSTCEAEYVAANAATKEIIWVRNILAGLGRTQTHPTPLFCDNQATIKISEDPANFPQTKHIDVRYHFIRERVEDG
TIQLRYVPTSDNIADIFTKALARPSFVALRYLLGLC
>Copia-7_Trm#LTR/Copia 36-4211  [Tremella mesenterica]
MSPSDSEDDRPTTRRRVTLTSSDNYKEWERSILSCLIQKDLDEVVEVDAVVPSGPATDQKAWMRKDRKAWAAIDESLGSA
VHNVLPPHLLDIHTTSPTGLLAKSLLDYLRATYSAARATRKAELYRIIWRTDINETGPMTSISLMQRAFNDLTASLVVMG
DSQLSYAILIALPASYATLASTFYMLGDPSSADVISAVNDESRRRQTQESGILALQTKVSRMKNGENLWEKDGRSHKGKV
KTSTIKDGSKPYCEFHHSNLHSTVDCRAAQRVTAAHMATTDQATTSTPSSLNFIATVSPSALVASGQLSSIIVDSGASHS
MVFDPQLLSNLQTLPSPVPVVIGNGTTIQAIKTGTLTLDNGFEVQNTLLVPNLGRHLLSVRSTTSSTTSWIFNSTSPILQ
DGERTILTAKLHDNLYTLSCTSSTIQAHTTSPDMSENLLQTWHRRLGHLHIGAVVKLGQEGRLGDTARWAKVNGDGFICP
ACIQGKGKRLPSPPSSQRASTLLGALHLDLFGPTRTTSHDGYQTFLTIYDDYSQHLQILFLKSKADTLITVQQYITLVEN
QLGTKVKIIRSDRGGEFVSSSFKQYTSSRGIEHHLVPPASHAQNGRVERAHLSILDLVRSLLIDSGLPDTFWSEAARYAV
YIRNQAPRANGTIPEDIWQGTQVPYTHMQPFGCNLFYRAHTETNKLKPRYLPGRLLGYEPNSTNYRIWDTTKKSLIISRD
VTFTGSLDTLIPTSKTDCSKYYLPSEVTSDDNTTPVDNSSLPTEDTGNSNSGIPPQDRGSPSPQLPQWRGWTLEEDPRFH
RSRAPTPDQLPEGLELTVNTQLRRSRCQAGQATEHVSRSLEDNLALSATTDLSSLTYSAYSAILAPQSFLEACRSPQWDS
WKQAIQDELKKMEKYKVWTVVDRKEGGSRILRARWVFTRKIDGATGQPAGFKARWVAKGYSQQSGVDYHELYAGVAHKDS
IRLFFAIVNYHGLLCDAVDIVAAFLNGDLEETIYLEPPEGSDIPTGKVILLLKSLYGLKQSPRCFNKKLDHWLRQQGFIP
ATANNCIYTCTTGSNTLLIALHVDDQLIASNSQLHLNDFKSQLHAAFEIKDNGPVSYSLGVNVYRDKSKKKLFLSQEHYL
KAVLERFGMDDCKPAQTPPPSGYRATLATDTEYDFVRNESYPAMVGSLLYAATITRPDIAFATSVLSRTTSKWSAQHISA
ARHLMRYLRGTVKLCLSYDASLPQAKPLIHGYSDSDWGGCLNTRQSTTGFLFYAFGGPIAWRSRRQSTTALSTAEAEYMA
TSDAARQALWLKEIARNFGYYHTKGISILSDNQAAILLSRNPVQHDRSKHIDIRYHFIRDKVENGDIVLSYVSTEENLSD
ILTKSLPSERHHYLSQGLGLQNPKIQEIRDEG
>Copia-7_TA_pol#LTR/Copia 1988-5146 via tfasty with COPIO_pol, 81.8% SW:3195, 2 frameshifts. [Triticum aestivum]
MTPRAYEWIMDSGCTNHMTGDRSLLMDSTLRPSDKSHITFADTGKSKVLGLGRAAISKDQHMDKVMLVESLGFNLMSVSM
LCDLNMIVLFGKYRCLVLMESDKSLVFEGYRKDDLYMVDFSAGPQLVVCLLAKASECWLWHQRLGHAGMRNLHTLVKKKH
VIGIEGVKFKKDHLCGACEAGKMTRAKHPSKTIMTTSQPFELLHMDLFGPTHYSTLTTTACLYGFVIVDDYSRYTWVHII
LYKTEVQDVFRRFANRAMNNYGVNIKHIRSDNGTEFKNTGLDLYLDTMGITHEFSTPYTPQQNGIVERKNRTLIEMARTM
LDEYKTPRKFWPEAIDIACHIINRVYIHKLLSKTSYELLTGKKPNVSYFRVFGARCWIKDPHHKSKFAPKAHEGFMLGYG
KDSHSYRVFNLYHYKIVETVDVRFDETNGSQRELLPSTLDEAPSSESIKLMGTGEIMPSEAQPEEELIISAPNQPEDNAQ
TEDNRPNDDNDQQEQGLHPVHPRVANEVQIEKIIDSINAPGPLTRSRATQLANFCGHFSFVSISEPKKVAEAFTEPEWIQ
AMQEELQQFKLNNVWELVKRPDPHKHNIIGTKWIYRNKQDEHGQVVRNKARLVAQGYTQVEGIDFDETFAPVARLEAIHI
LLAYANHHNILLYQMDVKSAFLNGKIEEEVYVAQPLGFEDPKHPGMVYKLNKALYGLKQAPRAWYDTIKDFLKSKGFKPG
SLDPTLFTKTYDGELFVCQIYVNDIIFGFTNQKYSDEFGYMMQEQSSMGELKFFLGLQIRQQRNGIFISQEKYLKDCLNK
FGMQDCKGYTTPMPAKHHLGPDDNGKEFDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQAAPKESHHLALKRILRYLA
YTPTLGLWYPKGSRFDLVGFSDADYAGDKVDRKSTSGTCHFLGRSLVCWSSKKQNCVSLSIVESEYIAAGSCCAQLLWMK
QTLKNYGINLKQVPLCDNESAIKIANNPVQHSKTKHIEIRHHFLRDHVMRKDIDIIHVNTEEQLADIFTKPLDEKRFCKL
RCELNILESLNVL
>Copia-8_BG#LTR/Copia 379-5394 via tfasty with Gypsy-26_BG, 59.6% SW:2480, 2 stopcodons. [Blumeria graminis]
MRHVTEELYDTPINENSDTAHTSTLIAKAIASYTNNEEIDEDLLATYQEEFEGWTLNHFSIAESEARKCLKQALRNHGIY
LGPTAGHINKQLFALLTAKTLPEWDDNELIKQVNLDPRSRFLEYRKKLILNREISPQQEVEVKVFAQKNICQSDQKDGKP
QSKSQRQPSFEQQSNIRQSSSLWHPSTSAPQCLPPTAEPVSRDSMIPQELFDFYRSLPTQGKYYExEPLDLQTKAAFTKI
YSSEDKYTGNLYDLLDDKVMLFLDICLAAGIRPNQFHAVFPRILTGKARDFQLHYIPRTDDFGQQYLKIKLHFEHEVHRG
KYFTDWTTATFEKLRSYNRDKSLHGILEMLLDKLQLCQRALGPRYSGDEQLHTAVINACRGVPELEYALMSPSKNCEQLS
DQLRSSVEVNVSRSINTLVMDSNEPDEAYYIDRCFNGNGKGRGESRGIHPSRGNLRGQNGVKGSFRGGGYFRDGFRGRGL
TRGLSRGLYQGHDNGRSNLKRCFVCNKEGCWSSNHSIDERKRAKQQYISDTGTEDDSQYAQYLADYEGNELDGFFGENDD
DEAHGPQDVMQNVSTYLTNAAFIHRLTGEDIYKEREDAVPVHLFTIDERYTTQVWQGIMPDSGASTMSTGGKAQYYALQR
EDPSVQLNLANAGKANIQFGPGKAVSSIGTVQVSTAIGSIRFHILDTPTPFLLCLKDMDKLDVSFNNVTNQLVQGEKTIP
VVRKWGHAWFHLRRTENASLFLTEVELRRLHRRFGHPATDRLYKLLTKAGHSDVDPSMLQYIEDFCHHCQTHGSAPRRFK
FSLKDDHEFNYEVLVDVLYLNGKPVLHVIDSATSFHGAKFLPSLSAHDTFEAFRMLWADTYLGPPDTLTHDAGTNFSSTE
WRNDSKAMGITCKQIPTEAHxSIGKIERGHAPLRKAWEILFTELGSFTREEAILQMAVKAVNDTTGPDGLVPTLLVFGAY
PRVTVDSPPSQTTQKRGAAVHKAMTTLRKLAATRQVNEALNARNGPDDGTVLALPLQSEVIVWRENKGWKGPYKIAAMEG
HNVTVEMINGPVTFRSTHVRPYQCQERLVTPEPSTITTAITPNQHDPLQPIIPSEQPRRRGRPQGSRNKPKATPPSIPCQ
AYLSKKEESDRILSLKLRAEGIITTPGSPFEASDKKEIDQLSERGVFEFVQHDPDGVHKNIRLFKSRIVREVKGKTDNPY
EKSRLVIAGHSDVDKTYILTQSPTIQRVSQRLLIAIAACLHSSTALELRDITQAYPQSQTVLQRYILAQLPSELQNKYPQ
GTVLHVIKPLYGVAESGVHWFTTYQKHHIENLQMVSSTYDPCLMVVNKNATNHGFGMVGMQTDDTLIVASPDFSIKEQKE
IEKARFDTKDKQVLSSKSSLNFNGCIVTMKDDKAGYIGMHQKGQGAKLKAVNSKAHDSAQQFLEQRARGAYIASICQPEA
TYDLSVTAQAQLPTVDDIAKLNIRLQWQIDNTQRGLNFVPIDLSRAKLMVFTDGSFANNRDLSSQIGYVIMLVNENVHRD
SFDIRGNLLHYSSTKCKRVTRSVLASEIYGMVSGFDLGLALVTTLKLVTRELQLKPVPLVICTDSFSLYECLTKLGTTNE
KRLMIDVMALRQSYERREIEEIRWINGLDNPADAMTKSSPNQALTRFIDNKTLSISMDGSVERPSYTDELMS
>Copia-9_CP#LTR/Copia 83-4108 via tfasty with SC-10, 88.6% SW:4991, 2 frameshifts. [Carica papaya]
MASGVGASMAQTMVPIFFGENYDVWKIKMRTLLRSQGLWDIVENGYSQFVAGHQLTPAETKKLEEDQMKDVRALFLIQQG
VAESLFSRIIGATRSKEAWDILQEEFQGSAKVIAVKLQTLRRQFQNLQMKESEKIKEYFSKVIEIVNQMRNFGEEIADQK
VVEKILISLPEKYEYIVAAIEESKDLSTLTIQQLMSSLESHEARKLQSGSNSVESAFSTSFRTQTSLTNQRNYQKKSGQN
MQKQQNQTEREAGSSSNMWCDICKKSNHSTSRCWKKKRCNKCKQHGHIAKYCRSRSQVHDRANFIEENENSENIFFTCHA
AIEEKDDIWYLDSGCTNHMTGNQKLFKDIDASYETKVHMGNGHLVQAKGKGSIAVQTKMGPKFLRDVLLVPDLKQNLLSI
GQLLQNGYAVHFEDGGCKIFDRRNNNYLLAKVDMERSRNFSLQIKYASEVALRTEVADCSDLWHKRYDHLNYNALKLLRV
KNMVQGLPFINTNSSTCEGCIFGKQHRASFPSGGSWRARAPLELVHTDICGKMQTPSQGQNWYFLIFVDDYSRMTWIYFL
KEKSEAFEVFRKFKAMVENQSDRKIKVLRSDRGGEFTSKNFDSFCEEHGIRRQLTATYTPQQNGVAERRNHTIVEMARSM
LKEKNMPNTFWAEAVNTTVYILNRSPTKSVPNRTPIEAWSGVKPVISHMKIFGCVCYAHVPTENRSKFDNKSERCIFAGY
ADGTKGYRVYNLEKKKLMISRDVVFDENASWNWEDEKVQEKAVIPTIISLGGQTTQDSTPRQNESSSSSTSSPSSSPSSS
RNAREESTTPESAPRRVRSLAEIYESCNFSLVEPQSFEEAEKQQNWVKAMEDEIHMIEKNNTWELVDRPEDREVIGVKWI
YKTKLNPNGSVQKYKARLVAKGFKQKYGIDYYETYAPTARLETIRTIIALTAQKGWRLYQLDVKSAFLNGYLDEEIYVEQ
PEGFLVEGGENKVYKLKKALYGLKQAPRAWYSEINKYFTQKEFQKSKSEPTLYVKKRGTDILIVSLYVDDLIYTGNNETM
LREFKKDMMETYEMSDLGLLHYFLGIEVCQGDTDVFISQKKYAENILKKFNMQDCKSVTTPLMANEKLKKDDGAKRADET
TYRSLVGSLLYLTATRPDIMFAASLLSRFMNSPSQLNFTAAKRVLRYIKGTTNYGIWYKPVENSKLIGYTDSDWAGCVDD
MKSTSGYAFSLGSGLCSWSSKKQSVVALSSAEAEYIAAARAVTQAVWLKRILEDISEKQEEPTTIFCDSKSTIAISENPV
SHDRTKHIAIKYHYIREAVEHQEVQLKFCRTDLQLADIFTKALTKEKFIHNRNLIGVSKKIN
>Copia-8_SMo#LTR/Copia 36-4388 68.3% sim to Copia-7_SMo, SW:2640, [Selaginella moellendorffii]
MGSVRDAIEIFDGKDFSGWQEQLEYYFMQKELWPVVDGSWTRPPTTDKADRKEWDGKNIKALGILGRGLGKVFSCHLDIT
KTAHENWENLKATLGKENETTLLDLETELGSVRQHEGESIQAFVGRLRKVASQIARITKTPVSEPKLKSVVIKGVAKYLL
TTATTHSSKKFDEMVLQLKSAENLMETNEGVGSQDQALFAGQSSKGKRSATVWDRLGPVNSPGTDGTSGSKSKKKKKKND
GLCNICKKPGHWARDCTNEEAKKAKEARKRDKGKQVANFAAADSDDEHGSLFMASLEDQQVTKHGLLKAEVIWVDSGANR
HMTYIRELFGKLRPVPDDKRIYLGDDYSHSVQGVGTIKVKLANGQKVDVSNVYYVPGVKKTLFSVGKIADAGCKIDFNEK
RCTISREGYELASGRRHAGLYCLNAEVVYPERLMLSSSVEDKPATLDTWHRRLGHSSIKRVQQLARGQLVRGLNIAPSSA
GFCEPCVLSKQHRLPFRSGVSERGKDVLELVHSDLCGPMQTMSRTKKKYFVTFIDDFSRMVAVKFLLHKSEAFEAFKVYK
LQAELETSRKIKMLRSDGGGEFTSNAFKEFCEQAGIKRQLSVPSTPEQNGVAERMNRTLVEMARAILQDAGMPNFFWCDA
VKTAAYLRNRLITSAVKGRTPYEVWYGKAPDVSHLRIFGCVAYALKDEPKKLDSRSEKCILLGYASKMKGYKLFNLNTRK
VITSRNVIFDESKMYNTKNQLATTSQQMPLLISGKQTLIEDSDSEEEDASRRQRAHSGGAATGGGGVVAQVPPRAGRTLP
RSVSDLSPSLNFEEGSSSESSQQQESSQQQEAAAPRRSSRVRVLTEQGQQYREDVALKQALEASRVEARAARDRSASEPP
PVTSAAFYYAASSPSQQQEEVPSEDMELDFLALFHQAEATVPKTLQEALAGPNAAEWQHAIFLEYQSLMENETWDLVELP
TGRRIVSTKWLFRIKYKPDGSIDRYKARFVARGFSQVEGVDFAETFSPVVKHASIRMLLNIAAQENLEVEQMDVTTAFLN
GDLHEEVFISQPEGFVVPGKEHLVCRLKKALYGLKQAPRAWYEKMDAYLLGLGFSKTSADSNVYLKRVGEFRAMIALYVD
DCILFSSEGATMKQLKLDLGCRFKMVDMGPLHYCLGIQIFRDRRKGVIQMSQKKYILDVLQRFQLGELNPATTPMEVGLK
LSQDMSPTTPAEQERMKRIPYRQMVGSLVYLMVCTRPDIAYAVGAVSQHLENPGYQHWLAVKRIFRYLKGTANYGLVYKQ
QPRGIQLVGYSDADWAGEVDKRKSTSGYMFSLGSGAVTWCSKRQPTIALSSTEAEYVATTLAAKECVWLRQLLSGVYYPQ
KTPTIIFCDNQGAIALTKNPKYHGRTKHIQVQFHFIREQVAMETMELVYCATGDQVADVFTKALPLAAFSKHVQALGVQL
LEADPSLARVG
>Copia-12_GM#LTR/Copia 54-4014 via tfasty with Copia-93_GM, 81.7% SW:3718, 2 frameshifts and 2 stopcodons. [Glycine max]
MASNGNFPASMPVLKGKNYDDWCAQMKVIFRFQDVTEVVQEGVQEPDSNPTDAQKVAHHDLMKRDANALFIIHQCVDADN
FQKIRSADTAKKAWDTLEKSYGRGxQTQESIGEFFSRILAITNQMNAYGDKQLDLGIIDKVLRTLTPRFVVAIEQGQNLE
EMKIEELQGILEAQEMRLNERNSQISTEQAMQAQTTKWNNYDGGKNKKGKGKGKGKNNKWKGSSEGSSSFGNHNQNEETD
KKGGGNYKVGKKKFNKKGIQCYNCQKWGHFADECRNKRVPRNADEAQLAQDEDSDSDKVLLMATTNSEEDNVNLWYLDTG
CSNHMTGHREWFVNIDDKVKSNIKFADNSSVTAEGIGKVMILRKDGQHSFINDVLYVPNMKNNLLSLGQLLEKGHSMQME
DSQMKIFDSKRRLILKASLSRNRTFKIGIHIAEFQCLAASISDESWMWHHMFGHLNFRSLSELKSKKMVHGLPQIEIPKQ
LCVECCVSKQPRNSFKSEIPIRSNQKFQSDVCGPFEVKSLGGNNYFVSFIDEFTRKMWIYFIKQKSEVFNSFKKFKLLSE
KQSDKVIKVFRTDGGGEYNSHEFQVFCDEEGIIHEVTSPYTPQHNGVAERRNRTILNMARSMMKGKGMPHYFWGEATSTA
VYILNRCHTKRLQGYTPEEAWSEKKPSVSHFRIFGSLCFKHVLEQNRKKLDDKVEPMILIGYHPTGAYKLYDPRMRKVVI
SRDVLIDETKGWNWEINVVDNGEGKVIVNLEDKQSEEDVPSCGEQLRRSQRERQVPQTLRxYELYPDTAITAEGDFVHFA
LLAESEPMSHDEASQSSHWRAVMEDELRSIEKNQTWELVHLPQGKRPIDVKWVYKTKVKPNGDVSKYKARLVARGFLQKH
GLDYNEVFAPVVRLETVRLIVAAACNRNWSLYQLDVKSAFLNGPLEEEVYITQPPGYVVAGQEDKVYKLNKALYGLKQAP
RAWNMKIDSFLVQQNFTKCTTEHGVYVRNTDSGEFLIICLYVDDLLVTDSSKEDIKVFKGRIIDEFEMSDLGELSYFLGI
EFVSTSKGIFMHKKKYAKDILKRFNMMDCNSVITPTETGIKLQIDGDKKEVDPTLYKQIVGSLRYLCNTRPDIAYCVGLI
SRFMEKSKTPHFLAAKRILRYVKGTLDLGILYPYSQKNIEGELFGYSDSDWCGDKDDRKSITGYVFKFGTSPIFWCSKKQ
SVVALSTCEAEYIAAAMAACQALWLEALMEELNLRNCNPMRLLMDNKSTIDLAKHHVAHGRSKHIETKFHFLCDQVSKEK
LELEFCRSEDQVADILTKPLKSIKFKELRDKLGVTSLTNLN
>Copia-18_BRa#LTR/Copia 111-4379  [Brassica rapa]
MSSPAHYETVTVDNVKLLNVNMTNVTKLTASNFLMWSRQVHALLNGYGLASYIDGTIEVPPPTTDNDGVVTPNPAYAANQ
RQDQLIYSALLGAISVSVQPILATTSTSAQIWEKLSSTYAKPTRGHIQQLRQQIKQWKKGTKSIDEYLQGFTTRFDQLAL
LGKAMDVEDQIEYIVEGLSDDYKQVADQIQSREVPPSLTEIHEKLLNHEVKLQSVTVESSPLPVSANVASYRQSGNNNSR
NNNGNRGQNRYNNRTPQTWQQQHFQPRQDQGSRGYQGKCQICGVFGHSARRCPQLQGSGSSSSIAPTSYSSPQVPWQPRA
NMAAMPYNSNNWILDSGATHHLTTDLNNLALHQPYNGGEEVIIADGSGLPISHTGSSTLSTSSRSLALNNILFVPNLHKN
LISVYRLCNTNKVSVEFFPAHFQVKDLSTGARLLQGRTKDELYEWPVLSNQTVSLFASPSPKTTLPLWHSRLGHPSQPVL
QTLVSQFSLPLSTSSQKQLPCSHCLINKTHKLPFYSNTIKSQTPLEYVYSDVWTSPIVSVDNFKYYLVFVDHFTRYTWLY
PLKQKSQVRETFIAFKAIVENRFQTKIRTLYSDNGGEFIALRQFLSTHGISHLTSPPHTPEHNGIAERKHRHVVETGLTL
LHQASLPATYWTYAFATATYLINRQPSSVLGNVSPYKKLFQQTPNYEKLRVFGCCCYPWLRPYATHKLDKRSAACVFLGY
SLTQSAYLCLDKSTGRIYTSRHVQFDEETFPFSQETKSPKPAEEPPAPSYPSQTQATSVPFSLPPSPLVSARSMPPLSSD
SHQSSSSSSMNNGDNDVLPSGNISNELETNSAGISGVAQDQPIPTSPSNTSSQTQPETIIPPSSSTNVPIQPPSTVLPVP
ENTHPMKTRAKNNIAKPKQKLTLLAAVPQTPQIPTTLNQALRDEKWRDSMSAEINAQIRNRTYDLVPPHPSQHVIPTKWI
HTVKYFPNGKIERHKSRWVARGFNQQYGVDYSETFSPVVKSITIRLVLQLAVSRSWTVKQLDVNNAFLQGTLTDEVYVSQ
PPGFLDKDRPHHVCRLNKALYGLKQAPRAWYQELKNFLCSVGFKNSVADTSVFTYIRPGCVLYCLVYVDDIIVTGSSNTL
VMEFITTLSRRFSLKEPTDITYFLGIEATSTAQGLHLMQRKYILDLLGRTNMLEAKTVSTPMATTPKLSLQSGTCLADPG
EYRTVIGSLQYLAFTRPDIAYAVNRLSQFMHRPTDLHWQAAKRVLRYLAGTSSHGILLRKDSPLTLHAFSDADWAGDTDD
FVSTNAYILYLGMSPIAWSSKKQQGVARSSTEAEYRSVANTAAEIRWVCSLLTELGITLLRTPVVYCDNMGATYLSANPI
FHSRMKHLALDFHFVRDNVNSGALRVVHVSTHDQLADALTKPLSRPRFQELMSKIGVKPLPPS
>Copia-17_BG#LTR/Copia 121-4733 via tfasty with Copia-3_DWil, 54.7% SW:815, 1 frameshift and 2 stopcodons. [Blumeria graminis]
MSSTKEDKRAIILKSGVPFTTWSSDLRSALAQDGLVGYVFHNVPEIRPRTAPVAPITLGDEKDTEKYDRYLDELEAWKMK
DLHAYGIVLRRLDHSLRPDSVNNLTALQLYTMVANTHKPSAAIPYRTCYRKLIDTKFTTNATNYCNEFQKNLTNFRNAAV
NLESTVDKSVYTVSLMDLLQxCSLKEHLTFSGLKLGEQQGQLIETTDSYASLEQMMATLRSTAGDRTTEYDNSIVVAAAR
NKGLNEFCQIHPKSKHTNRNCRVQHPELRDSKARSTKDINCKGRANTATLDENSDSDEPSIAMTAISENLALIASSSGHT
ITKDTLIWDSGASNHFINNRSAFISLAKLSKPFRFDQAVSKSTLSHGGTARVKVGSLNLKLADALYSPQSSINLISAGRA
YRLANILEDRKASLLVQLVNGHRVPVAQLVSINNVSIIVALDKTKHSEKPHLSPSGLIKPAVAKLQKCTTADRWHQRLGH
VGPLILSKTKTFAQGLGGLETSELSLCEACHLSKAQRTIMRTPRPIPFAPLDEVFVDMVGPVEPNIFGQRFLVIITDATT
RMRWWFGAVKKDEIPTKLIDWVNTMSNQFGEALRVCFSDGGTEIQRNSQWQEMARLKGIRQDITAPYTPEQNGPAEAANK
VIITRARCLLIDAGMPVIFWYWAVSHAVFLTNHLYNLTTRKVPTLQFHQELRVAHRKYLDFTCLPRFGCKAYRTLNKQEK
GGKFDPRAEVGWFVGFQANTTKNFLIVAPHKTPQKKWTHKVFTTPHASFCEDSMYGPTMARLQCLTPQQYRSGGGLGLNF
PPTTSVDFVPPVSFQNLHPQTVPDDSTSVNRKSSCVSNVERITLQNQSINGEMFDNLEDSQLFQPQCEDNLRNQEKLSQS
VSHTTDDDHENEGSNCSESEDQVIQSEEEIIQYDTPMQPFQPPILAGQKRAHSPAPQPSSTPKEVIHPGYSSLIDPLTTS
RGENLTEQDGDETQIEYNTLMTPFNPPPLAGQKRDYSPTPPSPPLPPTFITRRGRTTQRHDYKRLNTGKAVAPISTETDP
KSWIEAMTGSEARNWKQAAEAEFQSLISTGTAVIVDRKLVPKNRTILTGKWVFKRKTHADGSLDKYKARWTARGFAQQKG
RDYFDTFAPTPRADTIRLLLVLGHCLGWHRLQGDVPTAFLNPTLDVVLYIQMPQGFERKGKVVKLEKGLYGLKQAAALWH
ESVKVELDKLGLRPTESDVCLFTNSKRDVFVLLHVDDFQILGPNIHQIRKLAKALRSKFKFKAVSRDQFLGINVSHEGEI
LKLSQGRYARELLSRHGLADCKPVSKPIERRMEISSQPVCAERIAKFNQIVGGLxYLANQTRPDIAFATNHLARFLQNPS
DEHLLAAKHVLKYISKDPDAGLTYSKDKILMLEAYSDSDFAGDPSTSRSTSGSLILLGGPIAWRSHLQRDVVLSSTEAEY
LALTETCRQVTWFSEILDEIGLRDQIKGSNCTTIFVDNQSTIALVRNHDNHKRSRHVKLRNHYCRQQFRRGLIDIQYIPT
NRQRADALTKPLSNVEML
>Copia-18_Mad#LTR/Copia 118-4301 Copia-76_Mad 99% similar with 5 frameshifts. [Malus x domestica]
MVGSSSSGGDLRTPQFNGSNYDFWAIKMETILIAYDLWDVVEAGLVEQQAPAEDVSEEDEESESEHLPVEGPVVSKEVKI
KNAKALSLIQGAITDELFPRIRNEKTAKGAWEILRREFRGDKKVRAVKLQAIRADFEYLRMNDVESLDDYLARFFEIVNN
LKSLGEDVTEKRIVQKLLMSLSRRYKSIVSIIEETRDLDTIRIEEVLASVKVYDKREDLHDERDKYTGTERAFNNLKVGG
NGNGTGNFKGSQYKSNPKFGQYKKGKNWGQNSSWNNGSGGGWNNKFAAHNKQTSGSQGNVKPLCQVCDKYHFGICRYKGK
PKCGRCSRFGHLTKDCDNGKQVANCAKEEDLVTGTMFYACHASSIASSKSMWFVDSACSNHMTSQESLLINLDKSVTCKV
KMGTGDLVQATGKGTLVVETRRGKRYINEVLLVPGLDENLLSVGQMMEHGYYVLFGGNMAVIFDDSNLENVVAKVVMTGN
RCFPLSFESVNAVARKASIEEESRIWHKRLGHLNFNSLKRMQREGLVLGLPALSEMKEVCESCVSGKMHIEPFDKEKVWR
ASQPLELVYTDVCGPMQNESVGGNKYFIAFIDDFSRMCWVYFLRNKSDVFNVFKKFKAFVELQSGFKLKKLRSDRGGEYT
SHEFLNFCSNIGMERQLTVAYSPQQNGVAERRNRTICEMARSMMAEKNIPVVFWAEAVGTAVYLQNRCPTISVKSKTPFE
AFTGRKPGVKHLRVFGSICYSHIPSNLRQKLDDKASKGIFMGYGSCEKGYRIYNLQTKKIILSRSVIFDESKSWNWESKQ
EETVFMPLSFENENPEITETERFIHETQSCDSPNLTQLVSCDEHVTGSNSGSTSQGSTPSNTPVKLRSLEDIYARCHMTI
IEPETYHEAIEDNAWKEAMNAEIETIEKNGTWELVERPADKPVIGVKWVFKTKLNLDGSVQKHKARLVAKGYAQKPGIDY
NETFAPVARLDTIRTLIALAAQKGWKLFQLDVKSAFLNGVLEEEVYTEQPEGFEVRNASHKVYKLKKALYGLKQAPRAWY
SEIDTYLTSCNFKRSISEATLYTRTDDEGNMIIVSIYVDDIVYTGGSNTLLSEFKRDMMQKYEMTDLGLLHHFLGMGVLQ
TERGVFIHQSKYAKSLLAKFGMEDCKSVTIPLPTGEKLKKIDGSELTDEGLFRQIVGSLLYLTATRPDIMYAASLLSRFM
HGPTKKHMGIAKRVLRYIQGTLSYGIEFTRDKEVVLIGFCDSDWAGSEDDSRSTSGYAFSFGSGVFSWASVKQNTVALST
AEAEYVSAAGATAQAIWLRFVLDDFGELQADATPLFCDNMSAISMVKNPVFHQRTRHINRKYHFIREALQQGSIDVKYCR
SEEQLADIFTKALPKDRFNYLRMKLGVKPVSSLGE
>Copia-19_Mad#LTR/Copia 47-4216 via tfasty with Copia-18_Mad, 2 stopcodons. Over 85%identical to Copia-89_Mad, hich has frameshifts. [Malus x domestica]
MRSPSSIEAHERFAKMSGSGGSEVRTPIFSGENYEFWRIKMVTIFKSLGLWNLVEKGLPTPDLKKKKKEAEESSEDDSDE
EMIDVLVRDAKALGIIQNAVSDQIFPRIANADSAKMAWDLLYGEYHGGDQVRSVKLQNLRREFEYARMRDDECLSNYLTR
LNDLINQMRTFGESLSNERLVQKVLISLSKPYDSIYLIIENTKCLETVELQEVVAILKSQEQRFDLHTVDTTGKAFSSLT
ISPKGQNNGGSQFGPSQLQKNWNSKGRKWDSRPKFQQKFSTNSAHNAYSSQSVNQSSTKPQCKVCSKFHFGECRFKGKPK
CYNCERFGHWARECPVSKPVQKANSANQVEVTGNLLFANSTISESTVNGEWYIDSGCSNHTTVSEKLLVDIRRNVVGKVQ
MPTGELMNVAGMGTLVIDTSKGRKYIKEVMYLPELQENLLSVGQMDEHGYYLLFGGKMCSIFDGPSLDCLVIKVEMKRNI
CYPLTLLSNDQVALKTSLSRSTWIWHKRLGHLHQRGLKQLKEKEMVHGLPKLEEVDEICEGCQLGTQHREWFPKNQAWRA
SNPLELVHVDLCGPMQTESIAGNKYFMLLVYDCTRMMWVYFLRYKSDALNCFRKFKSMVELQSGFKVKCLTSDRGGEFTS
GEFNKLCDDEGIQRQLSMAYTPQQNxVVERKNRDVVEMEKAMLHDKGLPYYLWAESVHTNVYLLNRCPTRALGDITSFEA
FSGRKPGIAHFKIFGCLCYVHISSELRQKLDAKSTKGIFVGYATCEKGYRVYDPIKKRLWLSRDVVFDEGAAWNWKEISD
THVIVPNYENLSEQSQFSSPNTTLGSHDYIQSPRLSSSHETTGDIISSMKKSETYDHTPLKWRNLDDVLAQCNLCIVEPE
KFDEAAKDKSWMKAMEDELSMIEKNATWELVDRPINKLIIGVKWVFKTKLNLDGTVQKNKARLVAKGYAQKPGIDYNETF
APVARLDTIRTLVALAAQKNWKLYQLDVKSAFLNGVLEEEVYVDQPDGFVVKGSEDKVYKLHKALYGLKQAPRAWYSEIN
SYFVQCGFVKSQSEATLYTKEKGEEFLIVSLYVDDIVYTGNNNVLLNEFxEDMKIKYEMTDLGLLHHFLGMGVIQTHSSI
FIHQRKYAASLLSKFGLSECKSVATPLVPSDKLCKDDGSGPASEEQYRRIVGSLLYLTVTRPDIMYAASLLARFMHSPTN
KHFGTAKRVLRYIKGTLDYGLEYVKGKNAMLIGFCDSDWGGSVDDSKNTSGYAFSFGSGVFSWASVKQNCVALSTAEAEY
ISASEATAQAIWLRFVLEDFGELQTEATPVHCDNTTAIAITKNLVFHQKTKHIDRRYHFIKGALQEGIIDLVYCPTNEQV
ADIFTKALTKDRFNYLRDMLGVKSAQNLKG
>Copia-19_EPa#LTR/Copia 73-4178 via tfasty with ATCopia69, 84.5% SW:4341, 1 frameshift and 2 stopcodons. [Eutrema parvulum]
MSGGRVDIERFDRTGDFSLWKRRMYAFLSVSGLKDVLTVRHREPEEVGSEEQDQEKKKKTVEDEAARLERCGRAMNTIFL
NVGDHVLRRIERCSTAAETWALLETLYMSKSLPNRVNVQLKLYNFKMQDNRSIDENIDDFLKLIGELSHLSIEVPEEVQA
ILLLNALPMRCDQLKETLKYSREAIKLEDVASSARSKEKELKDSLGSRTPSLEGHFVRGRTENMNFQNGKGKGQRSRSKS
TEKNKICWICGKEGHFKKQCYKWFERNKHRNHSQERGESSMVKDDVQDLAGLIACEVNLMQGNNIQDEWVMDTGCSFDMT
PRRDVFIEFKEQTSGKVRMANNTSTKVKGIGSVRFQNPDGTTFVLHEVRFMLGIGRNLISLGTLENKGCEFKGSKGILKI
IKGCVVIMKGARRENDTLYFLQGSAKQAEAHSAVxTHSANLEKDSKIEYTKLWHSRMGHINQKSLEILVQKGCLKKNKIT
EIKFCEDCVIGKTHRTWFSQGQHVTKEKLDYIHSDLWGSPNVPVSLGKCQYFLTFTDDWSRKVWIYFLRTEDEALEKFTE
WKKMVEVQSERRVKKLRTDNSLEYCNMRFDEFCKENGIIRHRTCTYTPQQNGVAERLNRTIMNKVRSMLRESGLNKRFWA
EAASTTVYIINRSPTSATGFDIPEERWTASVPNLTGLRRFGCISYIHSDERKLNPRAKKGVFTGYPEGVKGFRIWVIEDR
KCIISWNVVFREDTLFKDISSELKQGNSETLSETNKLMSLDYTxHEQEQGLERSNQSQDQDEEIQSEAEDEKSAETEIED
QIRNDYQLARDRDRRQPRLPSRLEDYKVYAVDIDIAGYAYLMVEDGGKPEPGSYQEALTDPDRDECLEASDEEIISLLKN
KTWILVDRVKGYKPIGCKWVFKKKAGINGVEGPRFKARLVAKGYSQKEGVDYQKILSPVAKHVSIRFLLSAVVHFDMELQ
QIDVKKAFLHGYLDEKIYMEQPEGYIDNNHPNKVCLLQRSLYGLKQSPRQWNTWFDEFMRSIGYDRSEYNVCVYFKKTGL
EYAYLLLYVDDILIASRNKKVVTELKLLLSSEFDMKDLGDAKKILRMEIVRNKENGSLTISQQGYLHKVIGNFSMDQAKS
VNTPMGVHFKLKSATDKEYQEQHDRMKVNPYHSAVGSLMYAMVGTRPDIAHAVGLVCRFMSKPLKEHWQAIKWVIRYIRG
SLNTKLCYKKQGEFVVKGYYDADYAADLDRRRSTSGIVFTAGGNTISWRSSLQKVVALSTIEAEYMSLSDAAKEAVWLKG
FMNELGFKQEAVTIHCDSQSAIALAKNNVYHGRTKHMAIKYHFIRDLIADGIVQVTKIATEYNPTDIFTKAFLGRKLQDA
LQWLRITEE
>Copia-16_CQ#LTR/Copia 339-4329 via tfasty with Copia-2_CQ, 1 frameshift and 2 stopcodons. [Culex quinquefasciatus]
PTTGGxVYNAWRYRMLSLLEEREFLECIEANVADVPALKDEEGDDAAKQLEKARLRERRTKRDRSCKNLIISRINDDQLE
HVQDKTTPKDIWDALKHIFQRKSLARRMYLKKEILTLALGNTSLQQHFLTFDKLVRQYRATGADMDELDAICHLLLTLNA
SPKYAAVVTSLDTQPEEQLSLEFVKCRLLDEETKQKSVQIVIPKKEETAFVGAKAQQQKPKQKKKLRCYNCKEEGHKMSD
CPQKKKKEVKASANMAEEQSAVCFAGLSRGESVPEQPVTWYIDSGCSDHLANDKSLFVELEPLKCPVEIAIAKNDECIVA
KHSGKVKVISKVNDKDILCTIENVLFVPELRCNLFSVMRVDDAGMRVTYAEGEVAIYRGSELVASGKRDGKLYRLNFVRA
RVGENKSMLTCGLVPKNVQLWHRRFGHLNAKSLDQLIRRDMVSGLKLNGGQNGKELVTCEACVLGKQTRKPFVVREGKRS
SRVLELIHSDVCGPISPDGLDGAKYFVTFIDDWSHFVVVYLVEAKSEVFRYFKMYEAMATAKFGKKVCRLRCDNGGEYRS
NEFEQFCQEKGIQVEWTAPYTPEMNGTSERFNRTLVEKSRAMLEDSRVDKKFWGQAIQTAAYLTNRSPSSALPPDVTPYE
QWEGKKPDVSKLRAFGCPVYAHVPKELRKKLDPKAWKGIFLGYTRGGYRIYNPELQRIVHTRDVDFLELEKPEHKAKWND
ADVALLPSPEVDEDSIAADEQEPEESQVETDEEYESFQEESEGEPHEEEPNVENPPEPGPSGGRPQRPRNPPDWHKDYQV
EYAAFALNATSYVDDVPSSLAEARKRSDWLNWKAAVDDEMKSLTKNGTWTLAKLPDGRAPVSCKWVFAVKRGLDGDRVRY
KARLVARGFSQRKGFDYGETYSPVAKLDTLRTVLAVANREKLVVHQMDVRTAFLNGTLEEEIFMTQPEGFEEGTDLVCCL
KKSLYGLKQASRAWNERFNNFVVDRLKFERSLNDQCLYTRKDERQTLIIVLYVDDIVIAGTTLKAVETIKRCFFNEFDMT
DVGEIKCFLGMQVERNREEGVMRISQKQYMESLLRRFGMEDCKPVSTPIESRLKLHKGTEEERTSQPYRELIGCLTYACL
TTRPDLAAAVNFLSQYQSCPNEAHWKHLKRILRYIKGTLDVGLVYRKNLEAPTVEVFADADWANDVLDRRSVSGGIFKVF
GSTVAxITRKQQTVSLSSTEAELTALCAAVCHELWLGRLLQDLGFKPEEPVRVHEDNQSTIRVAEEAKDFGRLKHVDVKI
HFIRDLIKQKRIKLEFIPSANQQADMMTKGLPVAAFRKQCSAIGLERCSG
>Copia-13_ST#LTR/Copia 139-4519 via tfasty with Copia-81_ST, 75.9% SW:3677, 1 frameshift and 3 stopcodons. [Solanum tuberosum]
MSELTVATLEHNHPLYLHASDMPGTALIAVKLTGPANYSLWSRSLRLALLVKNKLGFVDGSCLKNSYKGELAAQWERCNA
VVLSCISSTVAQELITTIVYASNAKGCGMIxREIDKSNLTRVYQLWAEVSSLKQGTYSVTVYYSKLRDLWDELDVLVPSP
LCSCDEARPYIDHLSQQRLLMFLMGLNESYSHVRSDILLKSTVPTVNQAYATVIQEESQRLLGVVDINKEPLTMLVNRRQ
GFKGKRPLFDIACEHCGYKNHLTKNCYRIIGYPVNFKSKRKLGQGVAPGVENGVENSYRSHNPAPAGSAAGSTGFKSYAN
SAFTEGQGYGFNLTEEKYNHVLNLRHNNNLTNTGNDGECKANLAGNVSLTSDCSEYSWIIDSGATHHITSFKDLLAEMSS
IADHRSNTVQLPTGKKAPITHTGNSIILGRYTMKNVLHVPDFKFNLLSVATLTKDLLCSVSFFPNFCVMQELSNGKVIGI
GRERGGLYLLKDTVQAVANVAVKDDRLASLWHMRLGHPSLPTMQHISSLKGLILNQQCCHVCPQAKQCRPVFLPSLHKSS
TIFxLLHVDVWGPYRTPTYDRKQYFVTIVDDYSRFTWACLIQSKVEVQSVLKNFLLMINTQFGLKVKVLRTDNGTEFLNF
KCKELFSSLGIVHQTSCAYTPQQNGVVERKHRHILNIARALRFQAAIPISYWGHCIKAAVYLINRIPSAMLQGKSPHELL
YGSIPVLDHLRVFGCLCFTSVLPRTDKFAPRAKKGVFMGYAETQKGYKILDLESHSFHVSRDVRFVENQFPFQSASNPQL
PALFDSSWFPQSEFSLAPVTDNILPPAPVVNLPDVAVTDNITGHTESMDTMSIDENDREEVPMASPENCHIAPVAEPAVE
ISEHARPNRSLKPPIWHKDYIMPNPSRQAHTACLYPIADYVAYSKISSPYKTFLTALSNVSEPASFKEASKCKEWVAAMQ
EEISALEQNHTWSVVDLPLGKKAIGSKWVYKVKLQANGLVERYKARLVAKGFSQQEGLDYHETFSPVAKMVTVRTVISVA
ASHNWPFHQMDVHNAFLQGDLLEDVYMDMPQGFQRQGEYKVCKLLKSLYGLKQASRQWNLKLTEVLLGVGYSQSPYDHSL
FTKKDGQKIAVILIYVDDLLITGNSSKMIHELKDSLHNRFKMKDLGNLKYFLGIEVMRSTTGILLNQRKYALELISHTGL
SGAKPVSTPLEANIKLTTVEYDELTGTTNDPVYKDVTAYQRMVGRLLYLTITRPDISFAVQVLSQFMQRPKLSHWEAALR
LVRYIKNCPGQGILLSSTKNLxLEAFCDSDWAACPHTRRSVTGYMVKLGDSLISWKSKKQHTVSRSSAEAEYRSMAGAVA
EITWLVGVLKELNVQVTTPIRLHCDSKAALQIAANPIFHERTKHIEIDCHFVRERIKSGLIQTTYVNTKQQPADILTKGL
GAASHHLLLSKLGVFNIYSD
>Copia-13_AA#LTR/Copia 95-4141 via tfasty with Copia-113_AA, 82.9% SW:4117, 1 stopcodon. [Aedes aegypti]
MSLNHLNNGSGENGRTAAEAISVRVGGGSVALPAIERLRGRENYTTWAFAMRMILIREGCWEAVSAETAEAQALVPEDQK
QRALATICLSLENYNYSLVLDATDARAAWRKLESAFQDSGLNRKIGLLRKFTSIRLVNSPSVEAYVDELMSTCHKLASVG
FKVDDSWLAAMLLMGLPEHYEPMIMGLEASGIALTADAVKSKILQDVKIERGPTSCSSEGALYSKQGSRRGKATPAKSKS
DEKTCFNCRKPDHFAAKCPEKQQQSKMSKHNGLCSIFAMGDVNAGEWYFDSGATCHMARSDQEFTNEAKVSHNVGTANNT
SMQAVAKGSVAMDSSNGRIDVSGVLKIPDLATNLLSVSAICKKGKTVIFTKDKCEVLDQNGDLVVSGVEDGGLYRVNRPE
KSFLAGGIQLxHRRLGHLHEGGLKKLKRIANGVDFQDGSLAGCVACLEGKQARRPFTSSASRSEELLELVHSDLCGPVEV
SSLGGSRYFMTFLDDASKRVTVYFLKNKSQALEAFKSFKAKAERQTGKKLKILRTDNGKEYVNADFRKVLEQDGIKHQTT
CPYTPEQNGAAERMNRTLVEKARCMLNDAKLGKEFWAEAISTAAHVVNRCPTRALEDKTPEEAWTGKKPNLGHLKIFGSS
VTTLVPKAKRKKFDPKSEKGIFVGYCEDTKGYRVYDPVNDRFNVSRDVVVLQEGGALHVPEKRTEKVEFMELWNEYVEHS
GAAALPEIDRPMETVVSDAAQPAGVIDQPIGNPGHSGTLGEAIADDSDKEEFEDACADIALPPQLIRPADEQGLRRSGRE
RRYPGKYDDFISYSSFSGDVHSSQLSSNAMRDDDPTSYDEVLRRPDRELWMAAMQEEIASLAENSTWVLADLPEGRKAIR
NKWVFRTKRGPDGSIQRYKARLVVKGCSQRPGLDYNEVYSPVVRYATVRYLMALAVRYNLDIDQMDAVTAFLQGELKDED
IYMLQPEGFVASNGKVCKLKKALYGLKQSSRVWNAQLDAVLQEFGLKRSSVDPCLYWSMRGNKMMFVTIYVDDLLIFTND
RILKKKLKAHLQKRFQMKDLGEAQHCLGIRITRKREDGKLWLDQQAYIEDIIDRFGVAEAHPIATPADPSVKLDKSMAPK
TKSEIEEMKLVPFKEAVGCLSFVAQVTRPDIAFAVNVVSQYGANPGRPHWEAVKRIIRYLKGTTTKKLEYSASAPAEIVG
YSDADWGGDVDDRKSMTGYVFLMQGGAISWNVKKQPTVALSSCEAEYMAMSRTIQEAMWWRNLQSQFFEARSISVRCDNQ
SAISIANNGAYNPRTKHVSIRYHFVHDSLHQGIVKLNYISTTEQPADGFTKPMTVQKQQKFRKLTGVAD
>Copia-14_AA#LTR/Copia 77-4159  [Aedes aegypti]
MEDEKKWIFDGRNYDQWAYRMRVLLEEKGLVKCIEETINEEDYAELPEDSMEVKTRKKQQLEEKWKLDRKCKSLIVHRVS
DSHLEYVMGRKTAKECWDSIQGTFQRRGLANRLYYRRRLGLLKLKSGASMQNHLLEFDKLLRGLKMTGAKVEEDDAITQL
LLTLPEQYDGLCTALETMSFDKLSMEFVKNRLLEEEAKRFVKNDCLDEDGNTESAFAGKRFSFKCYNCGKLGHKRSDCRV
KMTEDNGRKYSEASGNSRNLTNHNGPRRGKANVHCATDIAFVATCETELAAAVTQKTDNSFQWFLDSGASDHMVRDRSYF
EELHRLPREISIAVAKSSQSLTAKYAGTIRTCTEVEGRIISSIVEEVLYVPGLHLNLFSISRLEDKGMSITFPGGKVKIV
KDGQTVATGRKCGRLYQLHVLLKKEAEALLTKDDEAGLWHRRYGHLGEANLQKLWKNGMVSTKATLLECVKQNPCEVCLS
GKQTRQPFGVAEGQRSTRVLELVHSDVSGPFTPGTYDSKRFFVTFIDDFSHFTVVYLLKSKDKVLECFEEYNAKVAAYFG
VKIAKIRCDNGGEYTSKAFRSLCRREGISLEYTAPYTPQQNGVAERMNRTLLDKARSMIFDAGLPKSLWGEAVLTAAYLS
NRSPTSALEILKTPYEVWYNKKPDIDNLRVFGAVAHTHVPKQCRGKLDPRSERNYMVGYATNGYRIFDPRKKKIFVSRDV
VCDENSRKPPTRSRDFNDELEEEEPQTDNEPVIDDQNEAKVQDENQIRQIQNNDENEQNVIEAAGVAGNVEDVVSDPRRK
RVHAVDESFSDQPVSKRLTNPPVWMNDYHVSYSSVETPMAYALNAEAFVEEIPNNIAELKKRDDWDRWKEAIESELQSLK
KNGTWTLHPKPKEKNIVDCKWVFRIKRDDNGNIERYKARLVAKGYSQKKNYDYTETYAPVARITTFRIMLSIANQFKYTI
HQMDVKTAFLNGNLKEVIYMYQPEGFEEGDRNMVCRLQISLYGLKQAPRSWNEAFNSFVLSLGFKRSNYDCCLYWKRTGG
VVVYLLLYVDNILLMTNNLEEIQLIKNQLSERFEMTDMGEVKQFLGIKVERYENQIKISQPKYIDGMLKRFGMEECRPTS
TPMEPKPQFEHEGNIELTKQPYKELIGCLSYLMLSTRPDIAAAVNTFSRYQAAPTDKHWSHLKRVLRYLKGTRDYGLVYR
RRADSSPLIGYADADWGNDGEDRRSISGFTFKIHDATVSWTTRKQNTVALSSTEAEYVSLSQAACEAIWLRNVLQEFGVD
ISEPTRIFEDNQSCIRIAEEPRDHRRMKHVDIRFHFIRECIQNKIIRPVYVSTKEQVADIFTKGLPAGPFAHLREKLNLF
G
>Copia-14_SI#LTR/Copia 115-4259  [Solenopsis invicta]
MNVSSLTRIETLNKENYDTWKMQMEALLVKNDAWVYANGECQKPVLAGDNSNESAVKTWVKNDNKAKSDIILAISPSELK
LVKGCETSREVWLKLENTYQSKGPARKATLLKQLTLQRMEDGGDVREHINKFFDAVDKLNEMEVVINPDLLAIMLLYSLP
PSFENFRCAIESRDELPNPDILRVKIMEESDARKSESRNTVQNAMIAKKGAYKQWNSNAKKNASSESKEKFKFQCHRCRK
FGHKSAECRSKSEKNSQAAKNTEDISLRASEISRVGDTAMTGSQIREEAWCLDSGASSHLCKELQDFTETHKVARGELSL
ANNSSTEIMARGTALFATEVYGKTNNVYLKDTMYVPDLRSNLLSVGKITDNNYDVIFKKDVALIVDYEGNTKLIAERKGG
LYFVREDQRQECKAISEPDKRSSGTLENWHRRLGHLNIRDLKNAQRNGSLIGLNFNQFDDNFNCDVCVKGKMTRTPFPKR
SNRRTESLDIIHSDVCGPMRVESMGKAKYYVTFIDDNSRWCEVRFLKSKSEVFEKFKEFQRVVENQKGRKIKHLQSDNGG
EYRSREFDDHLKECGIVRRLTIAHNPEQNGIAERKNRTLLDMARCLLIQSGLPPSFWAEAISTANYIRNRCPTESLGGNT
PFEVWTGEKPDVSNFKEFGCPVFCLDRNTAKGKFDDRCKRGVFLGYSEQSKGYRVWIPDERKIEVTRDVAFQEAPNVPPE
EYEDFSPENNIEDTETEPKDSLRREVVIENLSLEDTTDDTLLDEGENSEVEELNDDVISDDDLRGENSPPIACRAPGRPR
IIRTGSRGRPRKLFQSRYADASGVEAESVLLSEIPIEQAVVGPDSDEWYDAMASELKSIIKNDTWTIVERPKDAEVIKSR
LVLRNKYKPNGTIERRKARLVARGFAQRPGVHFNQTFAPVARLSSIRLLVGIAAHHGMKIHQLDVTTAYLNGKLEEELYM
EPPRFIIDALKRLIEKETRSDITVKAMTMSEELSTGEKVCLLKKSLYGLRQAGRNWHETLSGALRKIGATPTNADPCVYR
LGRGEDIVLIAAYVDDMLIASKSAKKIQEVKTSLALEFDVKDLGEIKHCLGIEFTQCGGTISMHQSGYIKDVLSRFGMSD
CKPVSTPMDSNVKLVKPEENSNTQVADAPYRELVGALMYLAVSTRPDIAFAVSSLSQFNDSYDQTHWTAAKRVLRYLKGT
MNLGIVFKPTTDPLRCFVDSDWASCPTDRRSYTGYITVLSNGPVSWEARKQRTVALSSTEAEYMGLTEAAKEAIHLRGFL
TELEFKDLTNVVIYNDNIGAQRLAENAVFHARSKHIDVRHHFIRDALKSDSLKVKYVPTEDMMADLLTKGLPGPKHKRCV
ELLGLGPPQVSIEASTHVSRGS
>Copia-14_GM#LTR/Copia 39-4093 via tfasty with Copia-64_VV, 80.5% SW:3847, 3 frameshifts and 3 stopcodons. [Glycine max]
MGTRFDVEKFTGENDFSLWRIKMQALLVHQGLDDALQGASKLPSTLQDLLSKAHSTIILSLGDEVLREVAEEKSAAEIWL
KLESLYMTKSLTNKLYLKKRLHQLKMEEGSSIKEHVSLFTKAVLDLKSVDVRIDEEDQAVMLLYSLPSSFENLVDTMLFG
RDTLTLEEVKATLNSRELKKKITENKGEGGDPEALMARGRSEKRDSKSKNKRRSKSRNKKAGYYCKKEGHFRKECPERKK
KNNGKYNDESDIAVVADGYKSAEVLSISTEKHNEEWILDSGCSFHMTPNLEWFSSYKEIDGGKVLMGNNMACNVIGIGTI
KLKMQDGSVKLLPDVRHVPELKRNLLSLGMLDQSGCSFKGEGGTLKVFKGSLQIMKGTRQNGLYKLQGNTILNSAGLVSI
SEPNASKLWHYRLGHVSEKGLEELHKQGLIGNGNYQKLSFCEHCVYGKQKRVSFHNATHATQGILDYVHSDVWGPARVPS
LGGAKYFITFIDDWSRKVWTYLLKHKNQAFKCFKQWKMLVENQTGRHVKLLRTDNGLEYLSEEFNEFCKNNGIRRHKTVR
LTPQQNGLAERMNRTILERVRCMLSNAKLAKSFWGEAVNTTCYLINRCPSSAIEFKTPEERWTGKAPSYENLRIFGCIVY
VHSNEGKLEPRAKKGIFLGYPEGVKGYKVWLLDPAGPKSIISRDVLFREEDMIVDYQQKSDLVQKGVQAEQNRHPDQGIR
LEVEKLAQTSSPVEDRNETSRDEPMISSIPEPVDTSYNLVRDRQKRQIKAPVRLGYADLIAYALSIEIDDQGSEPISYKD
AISRTDNDxWRSAMQDEFDSLMKNDTWKLVEKPAKQKVVGCKWIFKRKPEETGMDSYRYKARLVARGFTQREGIDYNEIF
SPVVKHTSIKIILALVAVHNLELEQMNVKTTFLHGNLEETIYMSQPEGYEVKGKDGDGMFAEEIFVWTEIVPKAVVQKIx
LFCSVKWFxQMVCLLKKSLYGLKQSPRQWYKRFDSFVVSNGFSRSSYDSCVYFKRLKPDCFIYLLLYVDDMLIASADMEA
IKELKNLLQSEFEMKDLGAARRILGMDIIRKRNEGLLYLSQSSYVQKLLRRFNMLDSKPVSTPIAGHFKLSITHSPQTED
EIKDMSRIPYSNATGSLMYAMVCTRPDLAYSASIVSRFMANPGKQHWSAVKWILRYLKGSKSVGLVYGRNSEGINGLSGY
VDADYAGDIDKRRSLTGYLFTLYGSVISWKANLQSVVALSTTEAEYIALTEAIKEAIWLKGLVHELEGKTGPVEVWCDSQ
SAIDLSKNQVFHERTKHIDIRMHYIRDIIAQGEVEVRKVAGANNPGDMLTKVVPCSKFTHCLNLVNIGTCDT
>Copia-67_BRa#LTR/Copia 116-4528  [Brassica rapa]
MVDGDESSAIKSGTSDNVGDVGNKVVTPYSLFASDNPGAMITSVTLTGENYNEWSSEMTNALRAKRKLGFIEGTIPKPLA
TDSNLELWLSVNSMIVGWIRTSIEPRVRSTVTFVQDSHKLWENLKKRFSVGNKVRVHHLKEQLAVCRQEGASVIDYYGRL
SKIWEELDMYKPLPSCSCSAVAEFERDREEEKVHQFVMGLDQARFGSMCQGIISSDSALDIGEIYAKLIREEQRLNSVKE
REVQQNAVGFAAKKEEGSTNSDQQSSRNRVAQCSHCGRSGHEKANCWQLVGFPDWWEERTTNRGGGGNRGASRGGRGRGG
SDRTRNSGARAHATTSNSSNFPELTQEQWRTLTQMINEKSSASSDKLSGKSKLGDLILDTGASHHMTGDMSFLINTKSIA
SCPVGFADGNKAYATHTGMFPLTDRITLDHVLFVPNLNCSLISVSKLLKQTNCFALLTDTICLLQDRFTRTLIGAGKERD
GVYYFTDVMAARVHRVSAPVAKSADHLRWHQRLGHPSSSVLSSLPMFSSNKLATLSPCDTCFRAKQTREVFFDSINKSNE
CFALIHCDVWGPYRTRATPGAVYFLTVVDDHSRAVWTYLMLEKSEVRAILTNFCRMTSNQFGKTVKTVRSDNGTEFMCLA
RFFRENGIIHQTSCVDTPQQNGRVERKHRHILNVARAILFQGSLPVRFWGEAIMTATHLINRTPTPILRNASPYEVLHGE
KPSYDHLRVFGSLCYTHLRARNKDKFGPRSRKCIFVGYPFAQKGWKVFDLEKEEFFISRDVVFYEDVFPMASASRDSSPS
LSVPIVSPNTAIEQSDTDWLFESVPTSLDRGSNTVTDTTTAEVVQPLPAPSMVSTEQIQVTADVDTGPVQESAPEQDALS
TDPVVLGRGQRVRLPSVKLKDYVNYNASCIQDTHLVSHCALSSSSANDPGMTICPFATYISDAAFSPVHQAFLAAVTSGV
EPKRYHQAIKEKVWRDSMKEEVTAHEEQGTWDITSLPPGKTAVGSQWVYKIKYNTDGTIRRHKSRLVANGNKQVQGEDFD
ETFAPVVKMGTVRMLLRIAAAKKWEVHQMDVHNAFLHGDLEEEVYMRLPPGFTHSDPTKVCRLRKSIYGLRQAPRCWFSK
LSKALIQFGFIQSYSDYSLFIYSKGTVEVRVLVYVDDLVIASNSLAKLTKFKEYLGQQFRMKDLGKLKYFLGIEVSRSEE
GMFLSQRKYIMDIVADAGLLEARPACTPVEQNHKIASDQTPLLPDPKFYRRLVGRLVYLSMTRPDLCYSIHLLSQFMKSP
REGHLDAALRVVRYLKGSSSQGILMSSDEDLALSVYCDADWSSCPVSRRSLSSFVVLLGDSPVTWKTKKQDTVAHSSAEA
EYRAMAKATREMKWIVPLVKDLGIPVSTPVSFFCDSQAAIYIAANPVFHERTKHIERDCHSIRDAVLAGLIATKHVRTKD
QLADILTKALGKPQFEVLLSKLGMKKLHTPT
>Copia-66_VV#LTR/Copia 83-4390 via tfasty with Copia2-PTR, 85.1% SW:5123, 2 frameshifts and 2 stopcodons. [Vitis vinifera]
MTKEEHASMANSHSSNGPIQNLSDDSSSYYYLHPSDNPGALLVSEIFTGENYIAWSRSMSIALTVKNxIAFVDGSLVQPI
TNDPHLRVAWLRANNLVLSWLMNSIAKEIRGSLLYFTNAFDIWEELKIRYLRSDGPRVFSLEKSLSSISQNSKSITEYFS
EFKALWDEYISYHPIPSCKCGNLNRCSCNILKDLTDRQQSNYVMKFLMGLHDSYSAIRSQLLPQSPLLSMSRVFSLLLQE
ESQRSLTNAVGISIDSQAMVVEQSSRIVSTSNTQFTKQKGKSNAIYSHCGYSGHLVDKCFQLIGYPPGWKEPRGKRFNST
PTTTKNFQRLPTANNTNILEQNSSNSNMIFSQEQIQNLLTLANNLSSSNTNSNATANVASTLGNSFFCNIVSSSKNQFTW
ILDIGATDHMICSPLLFDSIVLPKTSSKVHLPNGQTVPIIFTGSVKFSPDITLHNALYVPSFNINLVSASRLTKDNLIGL
FFLQSKCILQDLNKWRMIVLVEVQSSLYHLQQLSAQTNKEMLSSSIGLPSSSLVESCTVNSNLWHFHLGHIPNAKIQLIN
SSDSFVKAIHNKVCEICPLAKxKKLPFPISNSQSNKAFQLVHTDIWGPFSIPSYSGYRFFLTIVDDFTRFTWLFLMKTKT
ETRAILTNFLAYVHTHFNTNIQTLRSDNGQEFNMPTFYQEHGIIHQLSCVETPEQNGRVERKHQHLLNVVRSLMFQSKLP
LSHWTNYVLTATHLINHTPSYILNNQTPYQLLFQKPPNYNYFEVFDCLCFASTITNNRGKFHPRATKCIFLGYPPNIKGY
KVLDLTTLKTFVSRNVLLHESTFPSIPNTIHKPFVFPDFPQIYESKSYKPNNSISITSGSTNSTDPTSVIESSIPENTIH
ANNDANSLRRSERTKHLPKYLQNYYCGNMTKIDSATQAPSSCSSSGKPYCIFSFLSDSRLSSKHKAFIYVISSTFEPKTY
KQAVSIPHWQTAMTDEIKALKHNKTWDLAILPPNKTAIGCKWVYRVKFKADGSVERYKARLVAKGYTQQEGLDFFDTYSP
VAKMTTVRVLLAIAAAKQWYLHQLDVNNAFLHGDLNEEVYMQLPPGFSTPNDPRVCKLKKSLYGLRQASRQWYSKLSSSL
LMFGFSQAKTDSSLFIKQTSTSFIALLIYVDDVIIASNDLKEIDVVKKFLHESFTIKDLGELKYFVGIEVARSAKGIVLS
QRKYALDVLKDSGFFGSKPIGFPMESSLKLTANDSSPLLSDPASYKRLIGKLLYLTITRLDLAYAVQALNQFMSNPHSTH
LQAAERVLRYIKATLGQGLFLKASSDLHLKAYSDSDWGGCINTRRSVTGFTVFIGDLVYLLVDLNVKHPQPALLYTDSKP
ASKIASNPVHHERTKHIQLDCHLVREKLQEGLIKIIHIPSKHQLADILTKPLGCLNFHHLISKMGMINIHSHLEGG
>Copia-67_MLP#LTR/Copia 87-4543 via tfasty with Copia-2_PPa, 61.2% SW:1359, 1 frameshift. [Melampsora larici-populina]
MSLNPDKFFAQTTSPIPPSEHSDDAGDIISVNIQSSLKPPSQSTLSVPPNPIMSTSIPPPVEMSSQQQAMILNQSLDRSI
KKLTDETYMLWASFIRSRLKSMFLADYLSSDSIKLENSQFDDEVSRACITNWMLNNMDDINRARFEPKITIYREDGPDTE
NLPAKLWKAVNKHHSGISEELRLLLERALNLIVQSSNTPLLTHIKNFQTTVTKYKTSGGTKSDEDLGRKLLISLNNSYFQ
DAKEIAIAGIKDYDLVVADAVAMLTKNPIAPRHTTVVNHTAEASFASNSYPRNKNPNRCTKKKCTGINHNPDMCFKKPGN
KHLQREWIEQRVKLGQWNGDPPKDLSQSSSAAPIFKSEPTIEELENAFNSMNPSASHVSVQLLSTASNHNNSNTVEVLID
TAASHHMFKDKHLFINYVDLRNSNDSLSLAGGKSTLHIHGKGEVHFLGPDGHPFELKDCLHIPDLKRSLIGGTILLKQDF
ITKKDNNRFLILKDDKCAFTGTLNDNINLLRSSVRIIHVKSQPEANLISANADERILDLHRRLGHPNARYMKTMVLHNSL
KGLSSSSSHSSSSSSSSSSSSSSSSSSSSSSSPHVRSLSLLENVHLDLSGIIRTSAVDGSLYFMLFTDDFSRYRHVVGLN
AKSADVVFTKIKQYITLVERQCNAKLKMFTLDNGYEFINDLLVPYCKDIGIYLRTTATYTPEENGVAERSNRTITEPARA
IMLEANLPTRFWIYAIKASVYLKNRTISSSLPIGKTPFELWNGRQPDISHVRPIGCLCYVLIRKAIRGGKFQPVSRQAIL
LGHTEHNLNYEVFILESNTIVTSHDVLFRDRVFPLKKLKPFDISQLSFNRDENPQISDPSIDDPPPGDIDDDVLYPGGEG
MHQDNELDIIEPILEEPPLDPAVQPTPQDIPRRSSRERFPVQRYQPSASFAYWDDEGAFIDLHDPFPCAFAVGSMVRLIN
EPHNFKSAMKTSDQEKWKSACDKEIQNMKDRQVWHLVPRPADRPVVGSRWHFKVKLHPDGTINKYKARFVAKGYTQTYGI
DYTDTFAPTGKPSSFRVLVAFATYYGYEIHSMDAIAAFLNSKLKEKIYMEQPEGYEEGNEDEDLVCDVDQALYGLKQSAR
DWNDDFKKRCIKAGFKQSEADECVYIRRRLQDVCLFYLHVDNLAITGNKIKEFKEEISTFWPMEDQGLSTCVVGIQLVRA
GPNHYIIGQEAMTRSLLERFGMTDCKTASTPFPGGTKLTKSTDDEARSFSLLNLPYNSGVGSLMYLSQCTRPDITYAVGC
LSQHLNKPSLRHWEAFKHVLRYLSGTINHCIHYKNTSSTTISSNNGYTLPEHFADADWAGDKSTRRSTTGYVFLLCGGAV
TWRSRLQQTVAKSSTEAEYRAANEAGDEMIWLARFMKSVGLPQATPYLLNCDSLSAIDLSKDAVLHGRTKAIEIHFHWLR
EQVNAGIIKLTHCKTEDMIADILTKPLHPGPFNDFRERIGLKRVDE
>Copia-67_ZM#LTR/Copia 53-5509 via tfasty with SBCopia1, 74.6% SW:4827, 3 frameshifts. [Zea mays]
PPPPPLHGRPAAAPSLLRRPFPPLPLPLSYRAALAAPLAGLSPAAGAPPGFAAPAAVLSPAAGAPAGLAAPAAAPSPAAG
APPGLPATAAALSLSPAAGAPPAAALSPASGAPPGLAAPVAALPSAASAPSALAAPPAAPFPAVHRPCTSLRRCRAPPGH
AFVLAAALPPTAEPPPPVPTQTATLAAAPGHDGSPPAPALSLPDAALLRSQLLAPGFPHVTTTGGGPVRGCPLPTTVYSQ
PSAITSSLRAPSDDAAAILAATRAAVTAARQRAQDAARALEQEQAVVDAIERQYAETYRRLAGKGVSDGSPTSARHSADT
FEPAPAPASTLRASLHAQAAALTSIRATVTDVLAPDSTQYPRWRDQVLQTLRRYALADHVLSAVPDPSEDWLLMDEVVLS
WIHGTLTAELQDIVRVPDDTAHRVWGALEAQFLGNRQTRILYLETAFRQLAQGDLSVDEYCRQMKTMADTLRTLGAPITD
ESLVLNLLRGLSPRFDRVTPILTRMKPFPTFAEAKNDLLLEELRLSATATAAPATALYSAPRAAPSASGGVLFTALRPPA
VWSSSAACWLRGGRSRGRGRGRKSGRGGRGRSPGGSQWPSFYNPWTGTIHMWPGPSAGASAPRPAAPQQVFFAAPPPAAP
SAPPQPQQGLLPLPGPPAPPVWGPWTNGWDTQSLASSFSTMTLAPPTSVSDWVADSGASYHTTPDAGILSSTSPPHPSLP
SSIVVGNGSALPVTSVGDAVLPGPFRLTNVLVAPHIIQNLLSVRQFTTDNSCSMEFDPFGLSVKDLATRTLLARCDSPGP
LYTLRLPASTTSTSAPPVLAAAASSVTWHRRLGHPGRDVMSKLSSSTSVSGCRGSFEHLCHACQLGRHVRLPFPTSSSRA
AGIFDLIHCDVWTSPVISISGYKYYLLILDDFSHYLWTFPLRQKSDTFPTLSHFFAWVSTQFGRTIRSIQCDNGREFYNN
ASRDFFLSRGVHLRMSCPYTSPQNGRAERMIRTTNDVVRSLLFQASLPAHYWAEALATATYLLNRLPTKAVAHPTPYFAL
FGIHPSYDHLRVFGCACYPNLASTAPHKLAPRSTRCVFLGYSPDHKGYRCLDLASHRVLISRHVVFDESDFPFSSSPTAS
LTDLDVFLDLDPVSPTVVPPFPAGPSTAPPRAAPPAPPPPPLPRAAPTPSAPPSPAQPRAASASPESPRAAPPAPPSPAQ
PRAASASPAAPSAPPSPAQPRAASASPRLPHSPVRHRRLPRRLATPTPSRRTSAVVDAAPPARSRAEPPAYHPVVVHRDP
RHIHPMVTRRAAGVLRPPDRLILSATSSPALPPVPTTVRGALADPQWRRAMEAEYEALQANHTWDLVPPPPGANVVTGKW
IFKLKLHADGSLERYKARYVLRGFTQRPGVDYDETFSPVVKPATVRTVLTLALSRDWPVHQLDVTNAFLHGTLTETVYCT
QPVGFVDPAHPDMVCKLNKSLYGLKQAPRAWYSRFATFLCSQGFVEAKSDTSLFILRRGPDTAYLLLYVDDIVLTASSPG
LLRRIISCLQREFAMKDLGALHHFLGVTVERRPQGMFLHQRQYTVDLLERAGMAECKPCATPVDTQGKLSAAGPPVADPT
GYRSLAGALQYLIFTRPDIAYAVQQVCLHMHDPREPHLTALKRILRYLRGTLDFGLLLRRSSTTELRVYTDADWAGCPDT
RRSTSGYAVFLGDSLVSWSSKRQPVVSRSSAEAEYRAVANGVAEAAWLRQLLQELHSPLATSTLVFCDNVSAVYLSTNPV
QHQRTKHVEIDLHFVRERVACGAVRVLHVPTTSQFADVFTKGLPSVVFAEFRSSLNICSG
>Copia-67_VV#LTR/Copia 70-4269 via tfasty with Copia-57_VV, 81.0% SW:3914, 2 stopcodons. [Vitis vinifera]
MASTPTQSSSSSGSIGSGQSSTMASIPSYQMLNHTLPVKLDWTNYILWRSQIDNVIFANGFEDFIDGTSICLEKDLSQGV
MNPAFVAWRRQDRTILSWIYSSLTPGIMAQIISHNTSHSAWNALESIFSSSSRARIMQLRLELQSTKKGSMSMIDYIMKI
KGAADNLAAIGEPVSEQDQVMNLLGGLGSDYNAVVIAINIRDDKISLEAIHSMLLAFEHRLEQQSSIEQMSANYASSSNN
RGGGRKFNGGRGQGYSPNNNNYTYRGRGRGGRNGQGGRQNSSPSEKPxCQLCGKFGHTAQICYHRFDISFQGGQTTISHS
LNNGNQNNIPAMVASASNNPADESWYLDSGASHHLTQNLGNLTSTSPYTGTDRVTIGNGKHLSISNIGSKQLHSHTHSFR
LKKVFHVPFISANLISVAKLCSKNNALIEFHSNAFFVKDLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQF
SSIVENKAELWHNRLGHASFDIVSKVMNTCNVASRKYKSFVCSDCQLAKSHRLPTQLSNFHASKPLEFVYTDIWGPASIK
STSGARYFILFVDDYSRYTWFYSLQTKDQALPVFKRFKLQMENQFDTKIKCLQSDNGGEFxSFTSFLQAVGIAHRFSCPY
NSAQNGRVERKHRHVVETGLALLSHASLPMKYWHYAFQTATFLINRMPSKVLEYDSPYFTLFRRHPDYKSFRVFGCLCYP
FIRPYNTHKLQYRSVQCLFLGYSLNHKGFLCLDYATGRVYITPHVVFDESTFPLAQSKSSSSSNDTSAEGSTPALITPPS
FPCLLPDSKISHASIDSHSLSTSESPIPTTSSSPLDTSSSSPAIDLSPKSVPEPHITALAPRMTTRSMRGITKKKTILDL
SAIKVSEPSTLKQAFKDPNWTNAMEMEIAALHRNHTWDLVEQPPNVNVIGCKWVYKLKHKPNGSIERYKARLVAKGYNQT
HGLDYFETFSPVVKAATIRIILIVALSFKWEIRQLDVHNAFLNGELEEQVYMSQPPGYFDTQFPNRVCRLKKALYGLKQA
PRAWFQRLSSALLQWGFSMSRTDSSMFLHFGKATTLIVLVYVDDILVTGSSSTQISSLIAKLDSVFALRDLGQLSFFLGI
EVSYNEGSMTLSQTKYISDLLHRTEMFDTKPAKTPGAVGKNLSKFDGDPMADVTHYRSVVGALQYVSLTRPDIAFAVNKA
CQFMQQPTTAHWLSIKRILRYLRGTMQDGLLFSPSSNLTIEGFTDADWGAHLDDRRSSSGYLVYLGGNLVSWSSTKQKVV
SRSSAKFEYRGLVFATAEIVWMQALLQELCVPIPAIPLLWYDNISAYHMAKNPVFHARTKHIEIDLHFIRDQVMRGKIQL
HFVPTEEQPVDLLTKHLTSSRFLSLKSQLCIAPRPFHLRG
>Copia-65_VV#LTR/Copia 27-4458 via tfasty with SHACOP3_MT, 67.0% SW:3060, 2 frameshifts and 5 stopcodons. [Vitis vinifera]
MEKSQQTLASSSSSHFVPISFNHSTSVKLENHNFLIWRKQIFSAIRGHNLQHFVIGVHDPSLKFRSSEDRSQGIVNQDFL
DWEQQDQLLVSWLLSSMFEGVLSRCINCESAFQIWKTLEVYFASQTRIKISQYKTLLQNTKKESLSMNEYLLKIRGFVDL
LALVGVNLSVKDHIDAITDGLLSEYDTFFLTINSRTEDYSIEEIESLLLAQEARIEKHNKSATETASSNITQDPGNFGRG
NFSQGRGFTSNNQFHPNFGRGNFSPRGRDGFQGRGGFNNGGWRSWNTWNNNATANAEKPVCQVCMKIGHSADRCYYRYDP
SFQGPHTPGFTPSFQKSPQTQIQGGNKPNMQVLMATPENICDTNWYPDSGASNHVTTNANNLVEHTPYYGNEQVRVGNGM
GISIKHIGLSxFSSPFTSQLLSLNHLLHVPEITKNLLSVSKFARDNNVFFEFHPNFCLVKDQVSKIVVLEGKLKGGLYAF
DSSQIQLKKSAPSQVSLSQSVTSHQSGLRANCQVSIHVSDLQSQNGSSTVGIWHDRLGHPSFKIVQTVMSLCKLSKFNKI
LPNFVCKACCLGKIHMLPFPTSISEYQEPLQLVYSDLWGPSPVQSSNGYKYYVCFVDAFSRYNWIYLLRNKSNSFQTFQN
FKAQAKLQLGFKIKCLQSDWRGEFCAFTDYLTINGIIHRIYCPHTYQQNGVAERKHRHIVENGLTLLARASMPFKYWDES
FKTVVFLHNRLPSPVSHGKSPLxLLFNHVPDYKALRFFGCACYPNTRPYNSHKLAFRSVQCTFLGYSLTHKGYKCLNPSD
KIFISRDVIFYEHLFPFSESLSSQPQHSSISQPLSFRQSPPILYSKQHVSSISTASLPFPIALIPPINTTTHLENCQDPN
APIVSSSILSTVGNIHSMITRSKKGIFKPKVYSVTKEPQSADEALQNENWKIAMIDEYSTLLRHNTWSLVDLLAGRKVIG
CKWIFRVKENPDASINKYKARLVAKGFHQTAGFDYTETFSPIVKPTTIRVVLTIALSRNWKIQQLDINNAFLNGDLQEEV
YMEQPKGFIEKSTSHLVCKLHKSLYGLKxAPRAWFEKLYEALVDLGFTSAKFDRSLFTRFTMDHTTFLLVYVDDILVTGS
NPCVIQQLISQLNKSFSLKDLGEIDYFLGIQVKHTTEGLHLSHTKYVHDLLCKAKMNNANGMKTPMISGQQLTRLGSDTV
KDIQLSRSVVSALQYLTITRPEISFCVNRVCQYLKDPQEEHWQVVKMILKYLKNTIxYGLQYVTITRQEISFCVNQVCQY
LKDPQEEHWQVAKRILRCLKNTIQYGLHLTCSSTLNLVGFCDADWASSLDDRRSTSGYCVYLENNLVSWCSKKxHIVSRS
STEAEYRSLTGITVEITWLTTLLSELRIILPRTPAVCCDNLSTILLPANPILHARTKHIKLDLYFVREKVIQKLIDVRHV
PSSDQTTDLFTKAIPSSRFSLLRSKLKVLDLSTLSLRG
>Copia-61_VV#LTR/Copia 47-4040 via tfasty with SHACOP8_MT, 78.4% SW:3352, 2 frameshifts. [Vitis vinifera]
MATTNGSMVSVSQPAIPIFKGECYEFWSIKMKTLFKSQDLWDLVENGYPYPDEEARLKENTKKNSKALFFIQQAIHESIF
SKIAAATTAKEAWTTLKTAFQGSSKVITVKLQSLRRDFETLHMKNGESVQDFLSRVAAIVNQMRSYGEDILDQTVVAKVL
RSLTPKFDHVVAAIEESKDLSTYSFDELMGSLQSHEVRLSRTEEKNEEKAFYTKGETSDQKNGGREATGRGRGKGGAHGR
GGRGRGRGDAQGDQRQSTEKSRNKSNIQCYYCKRFGHVQAECWKKERQEKQANYVEQEEDQVKLFMAYNEEVVSSNNIWF
LDSGCSNHMTGIKSLFKELDESHKLKVKLGDDRQVQVEGKGTVAVNNGHGNVKLLYNVYFIPSLTQNLLSVGQLMVSGYS
ILFDGATCVIKDKKSDQIIVDVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVEGLKLLSKKEMVFGLPKI
DLVNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGLMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFK
KFKAFVEKQNGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMMKAKNLSNHFW
AEGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVSHLKVFGSVAYTLIDSHNRSKLDEKSVKCIFIGYCSQSKGYKLYN
PVSGKIIVSRNVVFDEKASWTWRVSEDGALVEISSESEVAQSEDQQPSVQIPASPTLSHSPSSPNLSSSSSSQSLEETPL
RKFRSLRDIYETTQVLFVADPTTFEEAVEKEEWCSAMKEEIAAIEKNETWQLVELPEDKNVIGVKWVFRTKYLADGSIQK
HKARLVAKGYAQQHGVDYDDTFSPVARFETVRTLLALATHMHWCVYQFDVKSAFLNGELVEEVYVSQPEGFIVPGKEEHV
YRLKKALYGLKQAPRAWYSKIDSYFVENGLERSKSEPNLYLKRQGKNDLLIICLYVDDMIYMGSSSFLINEFKACMKKKF
EMSDLGLLHYFLGLEVKQVEDGVFVSQRKYAVDLLKKFNMLNCKVVATPMNSNEKLQAEDGTERADARRFRSLVGGLIYL
THTQPDIAFAVGVISRFMHCPSKQHLGAAKRLLRYIAGTYDFGIWYGHVQEFKLVGYTDSDWAGCLEDRKSTSGYMFSLG
SGAVCWSSKKQAVTALSFSEAEYTAATSSACQAVWLRRILADINQEHEEPTVIYCDNKAAIAMTKNPAYHGRTKHVDIRV
HFIRDLVVEGKVVLQYCNTNEQVADVLTKALSRDKHVYFRSKLGVCNFESRG
>Copia-60_SB#LTR/Copia 510-4949  Copia-39_SB over 85% identical. [Sorghum bicolor]
MTSSSSSSSSIPGAQSSGAMGDSVTAPLFAAYASVNVKQHVPIALSLERPNYSKWKAFFTALCGKYGLLGHIDGTAAARP
ADPLWSQPDACIRGWMYGSVDDAVLDLAMEPDQDARALWVSIEALFQANKESRAVVLEQEFHNLLQGDLSIDVYAQQMKR
TADALREVGHTVSPAQLVLNLLRGLNPRFANTADIISNTSPLPDFKAATNMLRVKELRLGTEGKAASASALAASTTSACP
SQSCQSTPPASTNRGGGGKGKGGKGKGSRGGNGGGNGGSGSGGGGRYQQQGGNGGGGRNQQQGGNFGGRQQAGPWVCYSP
WAAPWPPQQQQQWGAPPVPPPQAHTAFAPPQFSTAGGPPAYGPPGSWDSAGLIAALNQMAVQGSPPWVMDSGATSHMSSN
DGILLSRLPSPPSSIMVGNGQSIPVLSRGTSRLQLADRSFHLDNVLVAPQLSRNLLSVRQLTRDNNCSIEFDASGFSVKD
LQTKMVLLRCNSNGDLYTIPHHMPSRCHVAVVSPELWHSRLGHPAPAVVSTLHKLSAIHCNKAARRICHACQLGKHARLP
FTSSVSSTSVPFALVHCDVWTSPVSSISGYKYYLVMVDDYTHYCWIFPLRHKSEVHGHIVQFVAYAHTQFSLPVRCFQAD
NGTEFINTATATFLASRGTLLRTSCPHTSAQNGKAERMLRTLNNAVRTLLIHAAMPSSYWVEALSTAVFLINRRPSSSIN
NSIPYHLLFHKMPDYSSLRVFGCLCYPNLSATTRHKLSPRSTACVFLGYPPSQKGYRCLDLSSRKIIISRHVVFDETHFP
FAASKPHPDSFDFLLQDILPAPPPSISDVRRTPAVEDAGDPISFDPAILWHGRLPQVAAGLQQAVPAGPAALQQAASAPA
AAAVPPGAAAPAAAAPPAAAAPAAPGAAAPAAPVQPPLRVYTRRPAPIMPAAPPPEPPPADVPPSRATRSRTGSLPPPVQ
RYGFAATSSSSASPLPANSRAALADPNWRAAMHEEYKALMDNGTWRLVPRPPRANVITGKWVFKHKYHADGSLARHKARW
VVRGFSQQHGIDYDETFSPVVKPATIRVVLSIAASAAWPIHQLDVKNAFLHGHLNETVYCQQPPGFIDSAAPDHVCLLQK
SLYGLKQAPRAWYQRFGSFVQQSGFTASTSDSSLFVYKEGADTAYLLLYVDDIILTASSPALLRRITELLHSEFAMTDLG
DLHHFLGIAVTRTTGGLFLSQRQYAVELLQRAGMAECHSTATPVDTRAKLSATDGAPVADATQYRSLAGALQYLTLTRPD
LAYAVQQVCLFMHDPRKPHLAMLKRVLRYVKGTLSTGLHIGVGGLDTLTAYSDADWAGCPDSRRSTSGYCVFLGDNLVSW
SSKRQTTVSRSSAEAEYRAVAHAVAETCWLRRLLQELHAPISSATIVYCDNVSAVYMTQNPVHHRRTKHIEIDIHFVRDK
VALGQVRVLHVPSSHQFADIMTKGLPVQLFTDFRSSLCVY
>Copia-62_Mad#LTR/Copia 67-4621 via tfasty with Copia44-PTR, 2 frameshifts. [Malus x domestica]
MENLPPLHGGNNPILTDSTPTLNTTTLTDPTMNPTLPIPQVVTQIVHHDSSTASIGIKLNGANYGVWSQIVEMFVAGKDK
LGYLFGSNPQPPIDDPAFTKWRTENAIVKGWLINSMEPNLIGYFLRLPTAKEVWDAVARTYYDGSDISQVYDLTCKASRM
RQDGRPVETYYSDLQSLWQEIDYRRPNPMKCGTDIEIFNKIVQTDRVYTLLAGLDEMFDKIRSDILRTEPLPSVEQTFAY
VRREGMRQAVMNTGGQLPSGAAMVARPATRAVAPPRPRAPDKSPAPSPGLQPQATAPSPAQGSLFAARTASRPTTGPRPP
RPKPPVPAGGCTYCGSEKHGRDNCFQLHGYPDWWEPLKLQKQRERDEQANLATSMSQLSLISQDDPPPVSSSSDMPPESS
GNCGYAFNMNSDDTPSGWIIDSGATDHMTYDPTDLACDTVPLRRNITNANGVTSPVTGAGTVRLTPTLSLPHTLLVPSLK
HKLMSPGQATEQLNCCVLMYPKFCLIQDILTKEIIGRGTKKGDLYFVDDVSTGRVNLAQGAVDHKRRQIWLWHHRLGHPS
FSYLQHMFPDLFVGCSVSDFKCDTCILAKSHRVSYPLNSNKSVIPFGLVHSDVWGPSPITTSSGIRWFVTFIDDCTRMTW
LYLLKHKSDVFLAFKTFHTMVQTQFSTKIRILRSDNGGEYVNNDFSHYLTNHGILHETTCPQTPQQNGVAERKNRHLLET
ARSLLIGAHVPRSSWDVALQTATYLINRLPSKVLDFLTPLQVLATFVHLPSVLVLPPRVFGCVAFVHLHKNQRTKLDPCA
LRCIFMGYGLHQKGYRCYHPPSRRMYVTMDVTFSESEMYYPSASSNPPPQGETRHDEKDWTMGATADLPLPLAEPIAAAL
PAQPTAAAVLPTEPTAGTAVPSSPTATVLPLVNFETSTDTTPPQSPNIVPPDDHTPENIPEVSSTIPVDVSDVPNYQLPF
RHNRGKPPNRYSPETTKGSKYPIANYVSSHKLSEPGKAFVQQISNDSTPSSLKEALSDDRWTKAMEEEMDALQKNQTWDL
VPLPRGKKRVGCRWVYTIKYKADGSVERYKARLVAKGYTQTYGVDYTETFAPVAKINTVRVLLSLAANLDWPLQQFDVKN
AFLHGNLKEEVYMDIPPGYASVSQPGVVCKLNKALYGLKQSPRAWFGRFRTAMRKYGFRQSNSDHTLFLKRRMGKLTALI
IYVDDMIVTGDDKEEISRLKDYLATEFEMKDLGGLKYFLGIEVARSKQGIFLSQRKYVLDLLAETGMLDCKPADTPIVQN
HHLAVHPDQVPTNRDRYQRLVGRLIYLSHTRPDIAYAVSVVSQFMHSPSDTHMGAVERILRYLKSSPGRGIMFSKNDHCR
IEGYTDADWAGNVTDRRSTSGYFTFVGGNLVTWRSKKQKVVALSSAEAEYRGMAKGVCELLWLRRLLGELGCPSKSASDL
FCDNKAAIDISHNPIQHDRTKHVEVDRHFIKEKLDGNIIQFPFVKSEDQLADILTKAVASQAFYNSLVKLGMNDIYAPT
>Copia-65_Mad#LTR/Copia 1475-5545 via tfasty with POPCOP2, 2 frameshifts and 1 stopcodon. [Malus x domestica]
MAAKNVVADLTKGEKLVGTNYDIWHRKIQYLLNEQELLEPLEASVDEPDLERDGTTAAQHTARVRSYESWFKKDRSARFT
MLSSMHDDLIGEYEGYSTAKEMWDQLKFAFGGTSTTRLRSLVLKFEVYRMDPKHSVSEHLRKMSSMIRDLKAAGSILTDE
QQVQAVIRSLPDSWDALKQIMTHNDQIKNFHDISRHVELEGERRVATQSTALLTQGGSKKGNQFKGKGKTKSEKKDAKLA
PNSNKIKAHRGKRGKKDESKSTCFNCKKKGHFARNCTEPNRKVIPNPKSVIVCVCSHIHVAHTSDNWIVDTGATKHVTRD
KRGFEKFQRFPAKSHWVYVGEGSRTEALGVGSYRLQLSTGCQLLLHDVLHAPGMQFNLLSVTALLYEGYCFYLSPSRLVI
YLDQVEIGYGSIKNDFVCLDLIDSCSSTSLVTVIKHVNSETWHARLGHIGQDRMTRLVREGLLGSLTNVNLPVCEPCLAG
KAVRKPFGKAVRATQPLELIHSDICGPMSVKARHGASYFLTLIDDYTRYGYVYLIAHRYEALDCFKCFVAEVENKKGKTV
KALRTDRGREYLSDQFKVFCESKGIRRQLYVPYTPQQNGVAERRNRTLLDMVRSMMAQANLPISFWGDALLTATYILNRV
PSKMVPSTPYELWNDVKPNLGNLRPWGCAGFVHNQSHKFGKLGPRANKHIFIRYCENSKGYVMYGEHPDGGRTEIDSRDV
EFIENDFPKLGDTVKNLDLHELEKDEELVTSSSExGELISNPMVAEYDVGGLDPSGSTQPSGSNVSINTQENTPNDGSVP
SEIQGHTVRRSKRGHIPKRHFEVDGEAYICIPSEEDEPSSYKEALSSTAKEKWITAMEEEMSSMDKNTVWELVDLPPGRK
TIGNKWVLKIKRKADGSIDKYKARLVAKGYTQQLGVDYEETFSPVVRFASIRLILAIVAQLDLELYQMDVKTAFLNGELD
EEIYMDQPLGFEAKGQERKVCRLKRSIYGLKQASRQWNIRFHNSITSFGFEMIEEDHCVYLKKSGKSILILSLYVDDILI
AGNDKTSIETTKAWLSSHFEMTDMGEAHYVLGVKITRDRSRKLLSLSQETYIKKVLERFKMENSKPIDTHMERGAILSLE
QCPKTKKEKEQMANVPYASAVGSLMYAMLCTRPDICHAVGMVSRYQSNPGQAHWQAVKRIMRYLQGTKDLALCYQGGDLK
LRGYSDADWASDRDERKSTSGYAFVLGGGIVSWCSKKQTCIALSTMESEYVALGSAVQEAVWLRRFLRQMGVTAYAQEAV
LVYCDSTSALAYTKDPKYHGKSKHIDTRYHFFRNKVTKGEVVLKHISTSNMLADPMTKPIIRNSFLTHVKNMGLCRV
>Copia-65_GM#LTR/Copia 1062-5054  [Glycine max]
MLNGTNFKVWKEAVEIVLGCMDLDLALRTERPTSTPEASNEVKIEKWDRSNRMCIMIMKRSIPEAFRGSISEGENAKKFI
DEIEQYFAKNEKAETSNLLAKLISMKYKGKSNIREYIMEMSNLASKLKALKLELGEDLLVHLVLISLPAHFGQFKVSYNT
QKDKWSLNELISHCVQEEERLQRDRSESAHLSSTSQNKKRKKTKGVAEGSSQQKKPKKDEEFTCYFCKKSGHMKKECPKY
ATWRVKKGKSLALVCSEVNLAFVPKDTWWVDSGATTHISVTMQGCLWSRLPSDDERFIFVGDGKKVAVEAIGTFRLQLKT
GFYLDLFETFVVPSFRRNLISISSLDKFGFSCSFGNNKVSLYQNSNLIGSGSLIDNLYMLDVNCSYNEILQTNSRGTKRK
LKENSATLWHKRLGHISKQRIQRLVSDEILEPLDLSDFEVCVECIKGKRTNIRKLGAERAKDVLELVHTDICGPFPTPSW
NGQQYFISFIDDYSRYGYLYLIHEKSQSLDVFKSFKAEVELQLGKKIKAVKSDRGGEYYGRYDGSGEQRPGPFALFLKEC
GIVPQYTMPGKPSMNGVAERRNRTLKDMVRSMVSHSSLPESLWGEALKTAAYILNRVPSKAVNKTPYELWTGKKPSIKHL
HIWGCPAEARPYRPHERKLDSRTISCYFVGYAERSRGYKFYDPTLRSIFETGNARFLEEVEFGKEENIRKVVFEEEPVID
SAQVLIPIVVQETTPVIENNVQTIVDDIVQEQDNDEVLPQIPIQQPQQPQEVPLRRSDRERRSAIPDDYIIFLQEHEDGI
GLTEDDPINFCQAMRSSNSQNWIDAMKDEMKSMQDNDVWDLVELPESAKPIGCKWIFKTKRDSKGNVERYKARLVAKGFT
QKEGIDYKETFSPVSSKDSFRTIMALVAHYDLELHQMDVKTAFLNGDIEETIYMMQPENFVSGDSKSMVCKLNKSIYGLK
QASRQWYYKFHQVITSYGFEANAVDDCVYHKFSGSKYSFLVLYVDDILLASNDIGFLQETKKFLTKNFEMKDLGEASFVL
GIKILRDRSQGILRLSQESYIDKVLDRFGMKDSKPGDTPIAKGDKFSLKQCPNNDLERIEMQKIPYASAVGSLMYAQVCT
RPDIAFVVGVLGRYLSNPGMQHWKAAKRVMRYLKRTKGYMLTYQKSENLEIIGYSDSDFAGCQDSKRSTSGYIFMLAGGA
ISWKSAKQTLVASSTMAAEFIACFEASNHGIWLRNFVTGLRVVDGIERPLKIYCDNNSAVLYSNNNRSATKSKFIDIKFL
VVKERVQNRQISIEHLRTNDMLADPLTKGLVPKVFHEHTAHMGVTPYSTLV
>Copia-68_VV#LTR/Copia 79-4140 Copia-73_Mad similar but fragmented. [Vitis vinifera]
MGDLQVIGGIKKLNNQNYNTWSTCMMSYMQGQDLWEVVNGSEITQPEVEDANGILRKWKIKAGKAMFALKTTIEEDVLEH
IRDAKTPYEAWNTFTKLFSKKNDTRLQLLESELFSVAQRDLTIAQYFHKVKTLCREISELDLEAPIGETKMKRIIIHGLR
PEFRGFVAAIQGWQNQPSLVEFENLLAGQEALAKQMGGVSLKGEEEALYAHKGGWNSKQHTVRRTKKNEDKAKCSQGERS
ARVEGDSKNPGTIKKFEGKCYNCGKKGHMAKDCWSKKGLVESNAATSKSEDEWDTQALFAAIGESAFIATTSEQIDYEKD
WIIDSGCSNHMTGDKEKLQDLSEYKGRHMVVTANNSKLPIAHIGNTVVSSQYNTNDVSLQNVYHVPGMKKNLLSVAQLTS
SGHSVLFGPQDVKVYHDLEVMEEPVIKGRRLESVYVMSAETAYVDKTRKNETADLWHMRLSHISYSKLTMMMKKSMLKGL
PQLEVRKYTICAGCQYGKAHQLPYEESKWKAKGPLELIHSDVFGPVKQASLSGMKYMVTFIDDFSRYVWVYFMKEKSETF
SKFKEFKEMTEAEVDKRIRCLRTDNEGEYTSDEFFYFLRECRVRDQFTCANTPQQNGVAERKNRHLAEICRSMLHAKNVP
GRFWAEAMKTAAFVINRLPQQRLNFSSPFEKLWNIKPTVSYFRVFGCVCYVFVPNHLRSKMDKKAVRCVLVGYDSQRKGW
RCCDPTTGKCYTSRNVVFDESSSWWSSEKEILLDSNVFKDELQSARIQLSLGEAENAVDGDIGDDKTQSPWQTGVHGQPS
EEGEPSETEAPIPLRRSARTKKPNPKYANVAIVEDANAKEPETFAEAFQNSDWSKAMKEEIAALKRNQTWELVPKPRDVE
PISCKWVYKIKRRTDGSIERHKARLVARGFSQQYGLDYDETFSPVVKLTTVRVLLALAANKDWDLWQMDVKNAFLHGELD
REIYMNQPMGFQSQGHPEYVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVTPADSSLFVKANGGKLAIVLVYVDDLII
TGDDVEEIFRTKENLSVRFEMKELGQLKHFLGLEVDRTNEGIFLCQQKYAKDLLKKFGMLECKPISTPMEPNAKMCEHEG
KDLKDATMYRQLVGSLLYLTLTKPDISYAVGVMSRYMQNPKKPHLEAVRRILRHVKGTIDYGLLYKKSEDCKLVGYCDAD
YAGDHDTRKSTTGYVFMLGSGAISWCSKRQPTVSLSTTEAEYRAAAMATQESMWLIRLMNDLHQLVDYAVPLYCDNQSAV
RLAENPVFHARTKHVEVHYHFIREKVLKEEVELNQIKSEDQVADLFTKGLSGSKFESFCHQLGMVKILEADVEG
>Copia-80_GM#LTR/Copia 68-4558 via tfasty with SHACOP2_MT, 76.3% SW:3994, 4 frameshifts. [Glycine max]
DKSEFRFRYSSFHPISQKLDDSNFLLWRQQVEPVIKAHKLQRFVASPQIPMRFLTEADCEAGNENPAYTDWEQQDQILLS
WLQSTLSVSILSRIIGCVHSYQLWEQIHEYFQKQTRAKARILRTELRTTMLEQKTMREFLLRIKCIVDALGSCGDPVLPR
EHLDAILEGLPEEYGPVISVIESKFEPLPIGEVEALLLAHEARMKKFQKRFADSPSINVAQGYNSSSNSYNSSSNNFNSQ
NRSNYSGNRGDFNRGSGYSRGGSDSDRGGGYSRGGNGFGRGGGRRGGGRGRGRYANFQCQVCFKFGHTTAVCHFRYDSDF
QPNASLTLMEPVFQSNSSNTFGSEQNQGTNSHKDSQPSAMLVNSENQDPNSTTWIPDSAASFHVTGESQNIQQLGPFEGP
DQIYIGNGQGLSIKSSGYTKFVSPINPRVSLSLKQLLHVPAITKNLISVSKFSKDNNVFFEFYPNHCAVKSQGTNEVLLK
GSLGPDGLYIFPHLALKDSASATCLLSNSSVDSAVTSVSSGSNTQISDSFVNAVSDVKTAPSTSSQTIWHLRLGHPNANV
LRLVLNHCNIPIVNKTMFEFCAACCVGKSHRLPSSLSQTVYSAPLELIYSDLWGPSHISSSNGFSYYISFVDAYSKFTWI
YFLKNKSETFSVFQQFKTMAELQFDTKIKSVQTDWGGEFRPLTSFLQTHGIIHRLICPHTHHQNGVVERKHRHIVELGLT
LLKQASLPLKFWDFAFQTAVYLINRLPTASLKFQVPYTVLFNKSPNYNFLRNFGCSCYPFLRPYNKHKLDFRSHECLFLG
YSTSHKGYKCLSPNGKLYVSKDVIFNELKYPYNDLFPPLSNSVTSSKSDFLPTAHIPLVSPSPNELTHSSQHAETNSTSV
SVDPSRSLNTEFPNSQNVTSSSPLSNAEPNSVTNEHSNTVSDLNRNPSELSSTSSSQSHTVSSPSSNPVLPSQNVHPMRT
RSKSGIHQPRLHPSLFLAHCEPKTVKQALADPQWFAAMKQEYEALLNNKTWDLVPLPKDRQAVGCKWVFRIKENADGTVN
RFKARLVAKGFHQVAGCDFNETFSPVIKPVTIRLIITLALTNKWDLFQLDVNNAFLNGHLEETIYMQQPQGFESSDKTLV
CKLQKALYGLKQAPRQWFDRLKGTLLQLGFVASKCDPSLFVYKDKGHIIYILVYVDDIIITGTSNVVIQQLTTKLHSDFS
LKQLGKLDYFLGIEIKSVADGTILLTQSKYIRDLLQKTKMAEAQPISSPMTANCKLTKAGSDLFSDPSLYRSVVGALQYA
TITRPELSYSVNKVCQFMANPMDSHWTAVKRILRYLKGSIHHGLHFKAAPSSQPFTIKALCDADWASDPDDRRSTSGAVI
YFGPNLVSWWSKKQQIVARSSTEAEYRSLAQATTEVTWIQTLLTELSVPFQTPEIYCDNQSAVAIAHNPVLHSRTKHMEI
DIFFVREKVLAKELKVYHIPAIDQWADALTKPLSPTRFLFLRSKLNVVESISDSQPH
>Copia-75_VV#LTR/Copia 77-4583 via tfasty with Copia-74_GM, 79.2% SW:4218, 2 frameshifts. [Vitis vinifera]
MSDISNESTTVPQPSLNNPIITDSSKISPTTSESHSVQITTIRLNGDNFLRWSQSVRMYIRGRGKMGYLTGEKKAPAVDD
PNYAIWDAENSMVMTWLVNSMEEDISSNYMCYPTAQELWENVNQMYSDLGNQSQIFELTLKLGEIRQGEDNVTKYFNSLK
RIWQDLDLFNAYEWKSAEDATHHKKTVEDNRIFKFLAGLNVEFDEVRGRIIGRQPLPSIGEVFSEVRREESRRNVMLGKK
GPGVAIEGSALVTAGGGCNKAAAFQRKSDERPRVWCDFCNKPRHTRENCWKIHGKPANWKGKTGDKPGRAIIPTANEAET
SPFTTEQMEHLLALLKSNSTSGTPSVSLAHTGNELYALSCRFKSTPWIIDSGASDHMTSSSNMFESYSPCPGNKKVRIAD
GNFSPIAGKGLIKISEGIDLKSVLHVPKLTCNLLSVSKLSRDSNCCVIFYESHCIFQDQSSGKTIGSARMIDGLYYFEDN
LPSNKIAQGLSSISSLSVRDQIMVWHCRLGHPSFSYLKHLFPVLFQKVDRLSFQCESCLLAKSQRKTYIPKPYYASKPFY
LFHSDVWGPSKVTTISGKKWFVTFIDDHTRLCWVYLMREKSEVERIFKEFYRMIENQFQTKIGILRSDNGTEYFNKVLET
FSNEKGILHQSSCSDTPEQNGIAERKNKHLLEVARAMMFYMNVPKYLWGDAVLTASYLINRMPTKILQYTTPLECLKKVF
PESRINSELPLKIFGCTAYVHIPKRSRSKLDPRAEKCVFVGYAPNKKGYKCFNPLTKRFYATMDVSFMENVPYFTKNLLQ
GEKLVEPNFWEIVEPLPSVILDISLEKENKETKPTESESKIRSVRRRNTTNEKKNRNNLEPVVYSRKKVPGRSKDQPIIP
AHGQPKALGNGSLNVSGNPPSIPTHIHASSSSVTDLSLPSHFGPSPEISAPEPGLGLAPIVPAQDLDLDLPIALRKGTRA
CTKHPIAKYISYSNLSDNYRAFTTNISKLVVPRNIQEALDEPSWKLAVFEEMNALKKNGTWEVVDLPREKKVVGCKWVFT
IKSKADGSVERYKARLVAKGFTQTYGIDYQETFAPVAKINSIRVLLSLAVNSNWPLHQLDVKNAFLNGDLEEEVFMSPPP
GFEESFGVGKVCKLKKSLYGLKQSPRAWFERFGKVIKHYGYTQSQADHTMFYKHSNEGKVAILIVYVDDIVLTGDDCDEL
EKLKGKLAEEFEIKDLGALKYFLGMEFARSKEGIFVNQRKYVLDLLDETGMLGCKPAETPIEPNVKLQPTKAENVKDRDR
YQRLVGRLIYLSHTRPDIAFSVSMVSQFMHAPGPEHFEVVYRILRYLKGTPGRGLLFKSRGHLQIEAYTDADWAGSVVDR
RSTSGYCSFVGGNLVTWRSKKQNVVARSSAEAEFRAVAHGICEIMWIRRLLEELKMTGSSPMKLYCDNKAAISVAHNPVL
HDRTKHVEVDKHFIKEKIDNGLVCMTYIPTEEQVADVFTKGLHKRQFDFLVGKLAMEDIFKPA
>Copia-80_PT#LTR/Copia 31-4232 via tfasty with Copia8-PTR, 86.1% SW:4780, 1 frameshift. [Populus trichocarpa]
MSSSSDQNPNFTLNTQPSSTADKPLIAFNITAQINEKLTPSTFPQWRAQFEALLIGYDLLDYVEGTLLCPSSSGTATDEL
CKLYWVRQDKLILSAILASTSSSITPLIATAKTSHEAWKKLKNLYASRSRTRAMQLKEELTLIQRGHRSITKYLHAVKTL
ADEIAIIDHSISDDDLTLYVLNGLGSEFREIVAPIRARESPLTFEELHDLLVGHEAYLRRLETATQHLVASANYTKTKSS
NYRGSQQWFPKPNDNPRGYHGSSTGRYFSGTQRDGRRFNSGRANNNFNRRSQPKCQICDQFGHVAKSCPQFHPQNVSVNC
ATTSTGKNNNWLLDSAASHNITGDLSNLSVHSEYDGTDEVILGDGSGLTVSHVGSLNLQSTHRNFTLHDTLYVPNLRKNL
ISVHHFTKQNNVFVELHPFHFFVKDATTGAILLKGACNDGIYIFPDSMVTPQKVANVHERTSIDGWHKRLGHPSLKIVHH
LVKNFSLPISSQNFFSSLCHSCSINKIHQHSFRSTSLQSHAPLELIYTDVWGPASYTGIDGSRYYLIFVDHYTKYIWFYP
MATKSSVSNIFPQFKKFVETRFQKPIKTLYSDNGGEFIALKSYFSRHGITHYTTAPYTPQQNGASERRHRHIVETGLTLL
QDAKLDFSYWPYAFQTASYLINRQPTPLLQHKSPFEALSDQTPSYLKLKKFGCICYPLTRPYNSNKMQPKSRACIFLGYS
STQNAYKCFDPHLHKFFISRHVLFDETQYHCPSSQILSKPVSPASHQVTPLHFGFPPIVVPPPMVSTTPASSLSPEDSPA
IVASSPGNFNTPASSLNLEQHPPLHPTELHSLTSPLSHSIVSSPIPPVNTPHRTRTMTTRSMNQIFKPKQLHTVTKHPLP
QTLEPTCVSQAITQLHWREAMSNELTALMKHGTWDLMPLPPNCAAVGCKWVFRVKRNADGSVDRFKARLVAKGFHQRPGV
DYTETFSPVVKPGTICAVLSIAVMRGWELRQMDVNNAFLNGALTETVFMVQPPGFRDLSKPNHVCRLNKAIYGLKQAPRA
WHTALRTAILQMGFHTSKADSSLFIYSNESNLCYLLVYVDDLVITGNNPTLVTTFIQQLGDMFSLKDMGPLHFFLGVEVI
PTKAGLFLTQHKYIRELLANSNMSGAKDISTPLSTSQSLQLVDGTAAVDSSEFRRIMGSLQYLSLTRPDISFAVNKLSQF
MHKPTTTHWTATKRLLRYLKQTIFYGIQVHRAGPSVLHTYSDADWAGNVDDRTSTSAYISFLGPNPISWTSKKQRAVARS
STEAEYRALAIAASETIWLSTLFKELAFPIQDSPLLLCDNLGATHLSFNPVNHSRMKHIQIDLHFVRDLVQQGSLQVRHV
HTQDQLADLLTKPLSKQRTTVLRNKIGLADGSSILRGRIRE
>Copia-83_BRa#LTR/Copia 87-4280  [Brassica rapa]
MAFNAPAVDVVQGVLNINMINITKLTTTNFMTWNLQVHALLDGYDVSGYLDGSIPAPDQMITVDGQSVPNPDYTKWRRQD
RLIYSGLIGTLSPSIQTLVTNTKTSQDVWKSLSATYATPSRGHIQQLRLQLKQYTKGDKSIDEYMRGLTSRFDQLALLGK
PLDHEDKIEYVIDGLPEEYKSVTDQVEGRDTSPSIIEIHEKLINKEAKLLSLSATVVTPVPVSANVATTRPKNQQHRNYN
RNWNNNNNNNKAPQQSYQSQSNDTNQNRGYQGRCQICSVFGHSARRCPQFAPSSQNAYPASPFRPWQPRANMAISAHNPS
NAWLMDSGATHHLTSDLHNLSLHHPYNGDDSVLIGDGSGLSITHTGSLSLPSNSRFLNLNNVLCVPNIRKNLISVYRLCN
ANRVSVEFFPAYFQVKDLSSGIPLIQGKTKDELYEWPAQSSTLQSFFATPLPKTTMVDWHFRLGHPAVSILQSIVSKFSL
PFAKSVTQPILCSDCAINKTHKLPFSTNTITSSRPLQYIYTDLWSSPIVSIDNYKYYLVLVDHHTRYTWLYPLKLKSQVL
DTFKAFKAQVENLFSTKIITLFSDNGGEFIAMRKYLQDAGISHLTSPPHTPEHNGISERKHRHVVETGLTLLTHASMPKQ
YWTYAFSTAVYLINRLPTAVLAMDSPYHKLFGVQPNYTKLRVYGCLCFPWLRPYNKHKLQDRSTPCVFLGYSPTQSAYLC
LQPSTGRIYVSRHVRFDESVFPFAQPKEPQPPLPATPEPIPIHEPLSTKINLNHPPNQAAPLVEQTGSSSSGSNLQVQST
HSTPSMEHSHGNSTTSAPPNTTSAASTSTAPTPSPDPMTTSSSTASASPVPPPPPSQHSMLTRRRNNIVKPNPKYNYSAT
MSGRAPAEPNTLIQALKDKKWRGSMSTEMDAFARNRTFDLVPRKPDQNVIGCRWIYKNKYNSDGTHKTCKSRLVAKGYNQ
QLGYDYTDTFSPVIKATTLRLVLDIAVSHSWPIQQLDVNNAFLQGTLTEEVYMDQPPGFIDQDHPDHVCRLRKAIYGLKQ
APRAWYNELQSYLLSLGFSNSLADTSLFVLKRGQELVYLLVYVDDILVTGNSKPAINRILQLLATRFSVKDPEELNYFLG
LEAQRTSKGLHLSQRKYILDLLHKYDMVNAKPVTTPMASAPKITLFSGTPLVDPKPYRQLLGSLQYLQFTRLDIAYAVNR
LSQFMHKPTDHHWQAAKRLLRYLAGTPTHGIYFTANNKLILHGYSDADWAGDADDYVSTNSYIIYLGRHPISWSAKKQQG
VARSSTEAEYRAVANAASELSWICNILTELGVAIPAAPVVYCDNVGATFLCANPIFHSRMKHIAIDYHFVRGQVQHGALR
VSHVNTKDQLADALTKPLTRARFLDLISKIGVIPLPPS
>Copia-82_PT#LTR/Copia 54-4245 via tfasty with Copia40-PTR, 83.2% SW:4527, 3 frameshifts and 3 stopcodons. [Populus trichocarpa]
MTDPNNTSHYHTSLPNLVTINVTAQAPLKLTSSNYLSWKLQFQTLFIGYDLQGFVDGTKPCPPQYIITDTSNTPNPAYHA
WIRQDQLILNALIGALHHSIIPFIACATTSQQAWKILASTYATPSRGRIKQVKTIFKALTKGSLSVSDFIHSVKAKADEL
AMLGAPIDGEDITDKILEELSDEYKELVRAVQARDTSISFDELHEKLLMFEASLNSSPKVPLQFTPTANAAFTRSGYRSQ
NNFGRYTPPPSQQWTTSSHSSSRPPGQLHNQGLHSPRPGPRPYLGYCQVCGLQGHTTKKMPSFKFIPQQTVLSKGSNRIT
SWQPQVHLAASTESSNSANYLTSTSLWLLDSGASHHITADLNNLSLHTPYTGPDDVMLGDGTGLRITHTGSSTLLSGSSV
FNLKNILCVPDIKKNLLSIYQFCITNNVSIEFLPWCFLVKDLLTGVVRAQGESKGGIYEWSGFISTSPSPTAFYISKTAP
INWHFRLGHPSLPILNVIFSKNKLTTCSMTKQISCNACQCNKSHKLPFSASTLESHAPLEIIFSDVWTAPMHSIDGFKYY
IVFVDHFICYTWFYPLQRKSDVKSTFIRFKAIVENYFKHKIITFYSDNGGEFTALKDFFQTHGISHHTSPPHTPEHNGIS
ECKHRHIVETGLSLLTHASLPQNFWSFAFSTAIYLINRMTSPSLNYFSPFELIFKKSPNYAKLxIFGCLCYPWLRPYSAH
KLDVRFKPCVFLGYSLSQSAYICFDPQSSKFFSSRHVRFIESTFPYPNLLQSHSVSNSSSLHALVPPILSIVAPAPQSPP
LCHLQFHLLxHPVSSSITTVTSSPPTIQPTQPSTVLPASPSPLITHQPPAQPIVPSHPMTTRSKNNIHKPIRKLTFLSHL
PSTDIQEPTSVANALKDAKWRHAMQDEFNALIQNQTWDLVSPQCASNLVGCKWIFRVKRNSNGSISRYKARLVAKGFHQR
PGLDYTETFSPVVKPTTVRLVLSIAVSNGWKLRQLDVNNAFLQGHLQEDVYMVQPPAFVDKERPYFVCKLRKAIYGLKQA
PCAWYHELRSFLLANSFTNSVNDTSLFILKHHGHLLYLLVYVDDIIITGDDEHAVDLLVHNLAKRFSLKNLGSLTYFLGV
EIQSNPRGLVLSHHRYIQDLLHRTNMSNSRPVATPLPPGPPPTLAMGKLLLDPSEYRATVGSLQYLSLTRPDVSFAVNKV
SQFMHKPTEEHWRLVKRLLRYLSGTSTVGLLLHHQSLAHLHAFSDADWGGNKDDFSSTSAYILYLGQNPVSWSFKKQQTI
ARSSTEAEYRSMADTASEISWVWSLLNELQYSVKQVPVIYCDNIGATQLSSNPVFHSRMKHVSIDFHFIRERVxSGVLRV
CHVSSDDQLADALTKSLPRYRFELLKDKIGLTQGRPS
>Copia-75_Mad#LTR/Copia 366-4967  [Malus x domestica]
MVTAAQLQIVQSPITNLIPNVSVSVTVKLDDTNYLVWHYQMRLLLESHGIFGFVDGTRRCPTRFVEDLDVEGVESDEYQI
WKMHDRALMQLLIATLSTPAMSCVIGCSNSHEIWTNLKDRFSTITKASIFQLKTELQNIKKGSENVSQYLQRIKDVRDHL
SAAGVSFDDDDIVILALKGLPLEYNTFRTVIRGRENVISLKDFRAQLLAEETTVEHAPVHESFTTAMTAQHTLSKGKALV
LDDGSSNSLTTQYHTGSSSGGSSNSGGPYPSGGTYHSGNNTNNSGGYRGQHFRGRARGRHPFGNNFRFSGPNNSPGILGP
ARPHVSTCPEHNNDIPVCQICNKRGHIAVDCFQRHSSTIVTSSPVQCQICCKFGHSAMQCYHRANFSFQGRPPPSSITAM
QANYQPSAPQEQFWVADTGATSHMTSDLSNLTFAAPFTGTDTITTASGAGLQISHTGSSVLHTPKSVFQLKTVLHVPKLS
QHLLSIYQLCKDNKCRFICDEFCFWIQDKITGKVLLQGLCRAGLYPIPLYIPSSILKQASPTPHLHKQQHCYLGQQVTTS
LWHNRLGHPSNTVVSQMLQQSQVPFSVDRSKHVCVSCLQGKFTKLPFSFPANKSVKPLEIIHSDVWGPSPTLSIEGFKYY
VLFIDECTRFTWIFPLMNKTEVFHTFVQFHSFIQTQFSTAIKVFQSDGGGEYIGTPFKQFLLDKGIVHHKSCPYTPEQNG
LAERKHRHIIETALTLLQTAHLPSQFWFHACAISVYLINRMPCQTLFRQSPYACLFQKSPVLTHLKVFGCSCFPMLRQYN
TSKFQSKTAQCIFLGYAGQYKGYICFNPLTKKFYVSRHVIFDEHTYPYLTLISQSHATQSPSLSSSHVIPPSVTLQNVVG
SHTSSSSSTSLHLAPRAPESSSMISSASESLASPTTAPELSNPSPTNPMPLPTPSTYPDMSPSPLMAPLSATQSPIPVDP
DFQQESLSVVLPVPSVSFHPMQTRSKSGISKRKAFSASVTSSVVQLTEPSSYKTASKIPEWQVAMQDEIHALEAQQTWTL
VPLPVGKNLVGCKWVYRLKKNPNGSIARYKARLVAKGYSQEEGIDYTETFSPVVKPTTVRLILALAAQFNWSLKQLDVRN
AFLHGDLLEEVYMSQPPGFVSSSHPSNYVCKLQKSLYGLKQAPRAWNEKFTSFLPGLGFNASLSDPSLFVKKHPTGIVIL
LLYVDDIILTGSSSSLISEVVSALTQAFDMKDLGNLHYFLGLQITYKSTGLFVSQTKYIQDLLAKVDMQDAKSCATPCLP
YHRLSKTEGTLYHSPEQYRSIVGALQYLTFTRPDIAFAVNQCCQFMHNPLDIHVVAVKRILRYLSGTLDFGIHFNSGPLH
LQAYSDADWAGDPNDRRSTSGYVVYLGNTPISWASKKQHTVSRSSTEAEYRALAITAAEVSWIRKLLCDLHVPLYDAPVL
FCDNISAIALSSNPVFHSRVKHIEIDYHFVRERVIRGDLAVQHVSSKEQFADILTKGLSISLFQDHCSNLMLGSHKHEIE
GGCKGIKTQDQSNG
>Copia-71_GM#LTR/Copia 61-4149  [Glycine max]
MASNGLSMFQFPRLTKENYDNWCRRMKALLGSQDAWEIVEKGYTQPQNEAILSPNEKETLLKSKKKDQQALTFIHQGLDE
AMFELVSNATTSKEAWEILKTSLEGVDKVKKVRLQTLRREFESLHMKESESISDFGNKVLAIVNQMKRYGENMEDVRVVE
KILRSLIAKFDYVVCAIEESKDLDSMTVDQLMGSLQAYEERFNRRHDEPLEQVLKAKASLKENGGESSQKARGRGRGRGR
GRGHGQGRGGRGDRDNFDNNEWRSHQSTRSRGRGRGRGRNNYEKAYERRYDKSNVECFNCHKYGHYSWECRTNVEEKVNL
VDDKEDKEVEESTLLLSLNNGEKEDKCLWYLDNGASNHMCGCKEKFVELDEKVKGNVSFGDSSKVQIQGKGTILISLKDG
AHKLITDVYYVPKLKSNILSLGQLVEKGYEIHMKDCCLWLRDKNSNLIAKVFMSRNRMFTLNIKTNEAKCLKASIKDESW
CWHMRFGHLNFGALKSLGEEKMVKGMPQINHPNQLCEACLLGKHARRSFPKEANSRAKEPLQLVYTDVCGPINPPSCGNN
KYFLLFIDDYSRKTWVYFLKQKSEAFVAFKNFKALVEKESGYVIKALRSDRGGEFTSKEFNEFCEKYGIRRPLTVPRSPQ
QNGVAERKNRTILNMTRCMLKAKNMPKEFWAEAVACAVYLSNRSPTKNVKDQTPQEAWSGVKPRVDHLRVFGSIAYAHVP
DQGRFKLDDRSEKHVFIGYDASSKGYKLYNPNNGKTIVSRDVEFYEEGTWNWEEKEDTYDFFPYFEEIDEEALTPNDSTP
ALSPTPSTNEASSSSEGSSSERPRRMRNIQELYDETEVINDLFCLFVDSEPLNFDEAMKDKRWRQAMEEEIKAIEKNNTW
ELSSLPKGHEAIGVKWVFKIKKNAKGEVERHKARLVAKGYKQQYGVDYDEVFAPVARMETIRLLISLAAQMKWRIFQLDV
KSAFLNGYLEEDVYVEQPMGFVIEGQEGKVLKLNKALYGLKQAPRAWNTRIDKYFQDNGFVRCQNEYALYVKTFNNGDVL
FICLYVDDLIFTGNNPNLFEDFKESMSREFDMTDMGLMSYYLGMEVKQTENGIFVSQERYTKEVLKKFNMLDCNPVNTPM
EGGLKLSKFDEGEKVDSTVFKSLVGSLRYLTNTRPDILYAVGVVCRFTEAPTSPHLKAAKRILRYLKGTIDFGLFYSPSN
NYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTLSTCEAEYVAATSCTCHAIWLRRLLEELQLLQKES
TKIYVDNRSAQELAKNPVFHERSKHIDTRYHFIRECITKKEVELTHVKTQDQVADIFTKPLKFEDFRRLRARLGVQKNFP
IKG
>Copia-68_ZM#LTR/Copia 443-5346 via tfasty with Copia-12_SB, 81.0% SW:5158, 2 frameshifts and 10 stopcodons. [Zea mays]
MAEGSKTDFAELALNGKNYLTWADDCQFHLEAMQPGKAIVRLGPNDIGLQLHEKAKAAIFLRRHIHPDLKMEYLEVKDPL
VLWTKLRERFGVQKHVMLPRAQQEWATLRFLDFKTVEAYNTAIHRIVAQLRFCGQIVTDLEMIEKTLQTFHPSNMVLQQQ
YRNDKYAKYCELVNMLLGAEAQNELLMQNYQKRPVGAAAVPEAHANFPSQGKRGSSRGRGRGRRNNQGPTRGTFKKHVTA
NGSGSSSNNGRGRGRGKGKSNPQQGDASASKHAGEGCFRCGSQQHWSRTCTTEKYLIDIYQEWKKRQNSEAHFIQAPVDA
TTGEHLELPQPAAQFEHAAINVDATTKSDTPLGKVDFDFDTDISCSxSRYQPLAPHLFPxQFYFxKNIYLVMMxxMLLLS
PYYLVDxDxLLCNFIYSSFMVxLFLLYYMLSSxMMNxINIIYYLYRTSSLPTMEENDEPCLIDSAATNSILRETKYFQTL
LKRTENITTIVGNNGRIVGSGRAIVVLPNGTRIFIEEAFLYPGATRTLLTFKDIRRSGYHVTTACVGGAEYLHITSTNEC
ETKVVEKAQGTSSGLYYSRIKPPPEFVAMSTIFKNPESFRVWHERLGHPGLRMMRNIITSSIGHGMKTTQIPKDFLCVSC
AKGKLITKPSYLKVKAESPSFLQRLQGDICGPINPLSGPFRYFMVLIDASTKWSHVCLLSTRNHAFAKFIAQIIRLRASF
PENRIQSIRMDNAGEFTSKAFNDYCLALGINVEHSVPHVHTQNGLAESLIKRIKFIARPLLQDSKLPTSCWGHAVLHAAA
LIQYRPSAYHSASPHQLTRGQQPVVSHLRKFGCAVYVPISPPQRTSMGPHRKLGIYVGYESLSIIKYLEPRTGDLFTARY
ADSIFDEEHFPALGGGLYLNNKECREIEWSASSIQSLDPRTRETELEVQRIIHLQNLANNLPDAFTDIRGVSKSHIPAAN
APERVEIPLQGMDSTRTPHPRKRGRKPDDSVSAKRGRLHQQVTEENATRSLSDVPAVTHLEGERPSANVRTNKSTRTSEQ
PVSNNLGNHKEPDDSVEEIAINYVETGELYNRKTTVVDTDFVSMIAVVIAEDPEPKSMAECQKRSDWVKWKEAIETELLS
LSKRQVFGPVARTPPNVTPVGFKWVFVRKRDANNEVVRYKARLVAQGFTQRPGIDYDETYSPVMSGTTFRYLISLAAGLN
LKMQMMDVVTAYLYGSLDSEIYMKVPDGLRVPDAKSNRNMYSVRLQRALYGLKQSGRMWYNRLSEFLLKKGYVNNPDSPC
VFIRKSQKGFCIVSVYVDDLNIIGYAEDIEEASAYLKTEFEMKDLGETKFCLGLQIEHLPEGIFVHQSTYCKKVLERFNM
IKAHPLKTPMVVRSLEMDTDPFRPKSDDEKSLGPEVPYLSAIGALMYLANCTRPDIAFAVNLLARYSADPTRRHWVGVKT
ILRYLKGTQDLGLFFPKNQDQTMVGYADAGYQSDPHNGISQTGFVFLCGGTAVSWRSCKQTLVTTSTNHSEIISLYEAAR
ECAWLRRMTNYIQKSCGYNTANTPTIIYEDNAACVAQMETGYIKSNMTKHICPKYFYPHELQNEGEVKILQVKSCDNLAD
LFTKSLPAVTFRKCVRGIGMRHLRDLQGSGGDHL
>Copia-71_ZM#LTR/Copia 50-5757 via tfasty with OPIE2_ZM, 82.7% SW:6094, 2 frameshifts and 1 stopcodon. [Zea mays]
MSGDHAKREIVTGDKPAGSGRTLSRESGDKYKEESSSSIKSHRRGDKKKKKMKKVVYYETDSSSPSTSGAESSTTSKRHE
RKKYSKMPLRYPRISKRAPLLSVPLGKPPYFDGEDYCMWSDKMRHHLTSLHESIWDIVEFGAQAPQVGDEDYDSDEAAQI
RHFNSQATSILLASLCREEYNKVQGLKNAKEIWDVLKTAHEGDEVTKITKRETIEGELGRFVLNKGEEPQAMYNRLKTMV
NQVRNLGSTKWDDHEMVKVILRSLVFRNPTQVQLIRGDPRYKQMSPEEVIGKFVSFELMIKDSKHIVNLEQGATSTPEVQ
PVAFKATEEKKEESTPSRLPIDASKLDNEEMALIIKSFRQILKQRKGKDYKPRSKRVCYRCGKSGHFIAKCPYTSDSDRD
DDKKGKKKMEKKRYYKKKGGEAHMGREWDSDESSTDSSSDEDAANIAVNKGLLFPNVGHKCLMAKDGKKKKVHSRDTPKY
TTSDDEGSSSDNEDDLISLFANLTMDQKKKLNELIETINEKDDLLECQEDLLVKENKKFVKLKNAYALEVEKCENLSKEL
SMCNDSISCLRDENASLNAKIEELNVCKPSTSTVEHVTICTRCRDVNVEAIDDHLAMIKEQNDHIAKLNAKIAEHELENE
KFKFARSMLYNGRRPGIKDGIGFQQGSQSNAKLNAPKKLSNFVKGKAPMVQDREGYILYPANYPEHKIRKIHARKPHTVS
HHAFMYKNEASSSRHSTHIKMPKKKIPNASNEHNISFKTFDASYVLTNKSGKVVAKYVGGKHKSPKTCVWVPKVLVSNVK
GPKTVGYLRTRPKFVLxVYASGGSSWIIDSGCTNHMTGEKRMFSSYEKNEDPQRAITFGDGNQGLVKGLGKIAISPDHSI
SNVFLVDSLDYNLLSVSQLCKMGYNCLFTDVGVTVFRRSDDSIAFKGVLDGQLYLVDFNDNKAELDTCLIAKTNMGWLWH
RRLAHVGMKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGVHHPHKNIMTTDRPLELLHMDLFGPIAYISIGGSKY
CLVIVDDYSRFTWVFFLQEKSQTQETLKRFLRRAQNEFGLRIKKIRSDNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQN
GVVERKNRTLLDMARTMLDEYKTPDRFWAEAINTACYSINRLYLHRILKKTSYELLTGKKPNVSYFRVFGSKCFILIKRG
RNSKFAPKAVEGFLLGYDSNTRAYRVFNKSTGLVEVSCDIVFDETNGSQVEQVDLDELDDEEAPCVALRNMSIGDVCPKE
SEEPTQAQDQPSSSIQASPPTQDEDEAQEEEDEDQDDEPPQEEDIDQGGDEDDQDKEDDQEIRDQRPPHPRVHQAIQRDH
PVNSILGDIHKGVTTRSRVAHFCEHYSFVSSIEPYRIEDALRDPDWVVAMQEELNNFTRNEVWHLVPRPNQNVVGTKWVF
RNKQDEHGVVTRNKARLVAKGYSQVEGLDFDETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQP
PGFEDSEYPNHVYKLSKALYGLKQAPRAWYECLRDFLITNGFKVGKADPTLFTKTIAKDLFICQIYVDDIIFGSTNKSSC
EEFSRIMIQKFEMSMMGELKYFLGFQIKQLQEGTFISQTKYIQDILKKFGMKNAKPIKTPMGTNGHLDLDTGGKSVDQKV
YRSMIGSLLYLCASRPDIMLSVCMCARFQANPKEVHLRAVKRIMRYLVYTPKFGLWYPKGSTFDLIGYSDADYAGCKIDR
KSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLSKVPLLCDNESAIRMADNPVEH
SRTKHIDIRYHFLRDHQQKGDIEIAYVSTHNQLADIFTKPLDEKTFSKLRNELNILDSRNFD
>Copia-74_SB#LTR/Copia 118-4347  [Sorghum bicolor]
MAASGKDAEVMERAWNQAAGNLIWPMLSKSNYQEWSAHVRCNLEAMYLWDAIDTKDASKVERRRDRLALGAMMRGVPSEM
HSMLLNKKTAQEAWEAIKSMRMGAERVKEVNAQKLLAEFESISFKPNESIDDFAIRITKLATDLKGLGEKSVDDTRVVKK
FLRVVPPRYNQVAVTIEMFCNLNELSVEELVGRFRAAEDRFEAPVESVTDKAGRLLLTEEEWAARNKSRMVPSDSYSSGG
KFGGKKEKSSARKGNNGKNRDTRDVAGSSSGAPKRKGRCRKCGELGHWARECPNAGKSESDDVVHHVTADTDSKPALLVA
HAHIERTPARVIQGVHLQQENMLPSKYDDGAWVLDTGATNHMTGCRDALADFDVSVRGSVRFGDGSTVEICGIGAVTMAG
KNHEHRVLTEVYYIPSLKCNIVSLGQLEEAGCRVEIDKGVMQVFDREHEGVTRNVLIRAERRNRLYIMKVNLSSPICLLS
KMDEEAWRWHARFGHLNFRALRALGVNKMVDGLPEIRKVEQVCDGCALGKQHQKPFPQASAYRATEGLELVHTDLCGQIT
PPTPSGKSYFMLVVDDFSRYMWIELLATKDEALACFKKFRVSAELESGRRLKALRTDRGGEFNSRAFVVFCDEHGIRHNT
TTPYTPQENGVVERRNQTVVEMARCLLKSMKVPPQFWGEAVKTAVYVLNRSPTKSLRGQTPFEAWFRKKPGVKHLRTFGC
VAYAKKIGPGVTKLADRSIPGVFLGYEQGTKGYHIYDAMGDKLMVTRDVIFDESRPWNWEGKDSRGEEDVLPFMVEDYDE
ATVHHPTTGDGRQSEAAKAVSDNEADPVSPAVSIPSVGGASSLASPQTPAIQWVTPPSGASVDSDGAPLRYRTMSDLLDS
TEELHDFEYSGLCLVAAEEPRTVLEAMTEQCWREAMRTEMEAIEANRTWDVSVLPPNQKAIGLKWVFKVKKDPDGNVVKH
KARLVAKGYAQRHGVDFDEVFAPVARIETVRVLLALAAQGGWQVHHMDVKSAFLNGDLSETVYVQQPPGFIVGTGDKVLK
LRKALYGLKQAPRAWNSKLDKELITLGFERSKLDHAVYRRGGKSSFLLVGVYVDDLIISGPCDSDIIEFKTEMKEKFSMS
DLGLLSYYLGIEVNQRAAGITICQSSYAAKILESAGMGNCNTCEVPMESRLKLSKLKDGEDLNPTEYRSIIGSLRYLVNT
RPDLAYAVGVVSRHMEAPGKEHWNAVKHILRYLKGTREYGCRYDKGADLKPMLIGYSDSDFAGDVEDRKSTTGVGYFLGT
SLVTWASQKQRIVALSSCEAEYVAAAAAACQGIWLNRLVADMMGTKQPKVKLYMDNMAAIALSKNPVHHDRSKHIDTRYH
FLRECIEDGKVEVEHVGTGEQLADIFTKALGRVKFVELRTALGVVCVHQV
>Copia-74_PT#LTR/Copia 56-4702 76.1% sim to Copia-67_Mad, SW:4527, [Populus trichocarpa]
MASESNFVQPSIPRFVGHYDHWSMLMENFLRSKEYWQVVESGIAAAADEGNLTSEQQKTLADQRLKDLRAKNYLFQVIDR
SILETILDKETSKGIWDSMKKKFQGNTRVKRVQLQALRKEFEILHMKDGENVSDYFSRTLTITNKLRFLGEEMKEITVIE
KILRSMISKFDYVVCSIEESKDLYTMSIDELQSSLVVHEQRMHSHVVEDQALKTTHDYNQVKTGRSSSYLRGRGRNSGRQ
SFGGRQGFDKSVVECYYCHNLGHFQYECPRKSRNRGSQSQSQAYYAETDEPLLLMACIEDEEIMKSRHFMDENELMLLMA
CVDDAKEIEFFDSLLENTDHMPTDAHCFEEKCADGKSYEIVENYADEGNCAVEMSCADEGECENASKLHSNTPNLEIADE
KEFLEIPDETELSGRPVQCCLPSGRPVHKLEGVEISTELNEGKNNIEGAKLDFDEIKITKNTMQMLLMAHIEKAHDETAW
FLDSGCSNHMSGHKNFFLELDENFHRSVKLGDNSSIDVLGKGRIHLQVNNSSQVISEVFYIPDLKNNLLSIGQLQEKGLA
ILFKNNKCKVFHPDRGLIIETEMTMNRMFIVIAKIQFPDYHCFITPAQNLEYLWHCRYGHLSFGGLQTLLQKGMVHGLPQ
SKYSNMICEDCILGKHHRNSFPRTTTWRASQPLELLHADLCGPISPISNSHKRYLFTVIDDFSRKLWVFFLTDKSEAFKQ
FKLFKTRVEKETGINIKGLRTDRGGEFTSKEFAEFCELHGIKRQLTAAYTPQQNGVAERKNRTIMNMVRSLLNSRKVPKI
FWPEAVNWAVHVLNRSPTFAVRNKTPEEAWSGTKPSVAHFRVFGCVSYAHIPDNKRTKLDDKSLKCVLLGVSEGAKAYRL
YDPETQRIIVSRDVVFKEEESWPWSAEYMDAIQASIEWGDLDEELPNNDQDVEIAEHTSNSEIDRTDATGGLDQLENSNG
NSTHAAATAEIDGDGNLIHTGADEINGNIDHSHGAEGSSAAIKRARHPSVWLRDFDSGEGFSDEDYQGNLALLVDADPLS
FKDAIGISKWRSAMDSEIEAIKKNKTWDLTDLPNGATVVGVKWIYKTKLNEHGEVDKFKARLVAKGYTQKHGVDYTEVFA
PVARMDTIRIVLALAAQKGWSLFQLDVKSAFLHGELNEEVYVEQPPGYVMKGAEHKVYRLRRALYGLKQAPRAWYSRIEA
YFLKEGFEKCPYEHTLFIKKSQGTSLLLVCLYVDDLIFTGNDEALFSSFKLSMMKEFDMTDLGRMRYFLGLEVVQRADGI
FVCQKKYAQEVLERFNMAECNAVHNPIVPGVKLITDPTGMAVNNTHYMQMVGCLMYLTSTRPDIMFVVSLLSRHLAHPTE
LHLGAVKRVLRYIKGTISYGIFYKQNGHKELLAYTDSDYAGDLEDRKSTSGFLFMLSSGAVSWSSKKQPIVTLSTTEAEF
IAAASCACQAVWLKRVLEKLDHISDGTTIIYCDNSSTIKLSKNPVMHGRSKHIDVRFHFLRDLTRDGVVTLLHCHTQEQL
ADIMTKPLTRVVFERLRMMMGVCEDSHVN
>Copia-43_ST#LTR/Copia 143-4636 via tfasty with Copia-57_ST, 75.1% SW:3708, 2 stopcodons. [Solanum tuberosum]
MAIGTGADVSESSSQERNNSIPDQIDKFTDIHPRNPLYLHPSDTPGSILIPQQLTGIENYTGWSNSMKVALLAKNKIGFI
DGTCRRDYYKGDLLHEWDRCNAFVLSWITNSVSKELANGLMFSYNAHNVWKDLQERFDKRNLTRIYQIHREISTISQGTF
TVSEYYSKLRNLWDEYVSLVPLPACECDKYRVYAEHMERQKLMQFLMGLNDNFAQSRSQILLTIPSPSLNQAYSMIMQDE
SQKIQSSLISNCVLPLQKLDVNDSTVLASMHNNKFNQNSGLYCDYCHLRNHTRVNCYKLIGYPQNFKFTKRKNADDRNFK
GQSTSTDKSHNFGGNRRAQANNVNFTEDLESSSYPHTVPTFTPDQYNHLLKLIDKDSSTQKSDANMAGNPFIFPHTFSTS
NGSFSADNDTTPWIVDTGATDHMVHSLDTLLNPTPASRTSSTVYLPNNQTAEVTHTGSCNLFDNSTVHNVLYIPQFAYNL
LSISKLTKELNCCVSFYPQFCLFQDLCNGKVRGIGKERGGLYMLPSTKKPSPPSPATAFHSSSTHTQSLSSTSTDIWHMR
LGHAPIAVLHKIESLKLSLQNKVSHFCPVCPLARQTKFPFPSSSKKTVIPFELLHMDVWGLYKQSTYNGHRFFLTIIDDY
SRMTxIFLLRYKSEVVTFIAAFINLIKNQFSASIKTVRSDNGLEFFNHQCHSLFTSLGIIHQSTCVNTPQQNGIAERKHR
HLLEMARALRFQAHAPLKFWGECILTATFLINRLPSSVLSGKSPYEVFHNQVPQLTHLRVFGCLCYATKPMSTDKLSPKA
IPSIFMGYSDTQKGYKLYNIATGSFFVSRDVSFQEDIFPFKHPKHTFLDSQPPAHNSSFPAPLSAFPNSIDDNFPFIPST
SQPPSSSEALDPQLSCPHDSLVLPVSPSSLSSPSHDTHSLPVNIPKRSSRSTKPLIxHTDYVTASKTLHPISSSMTYSNV
TPSYKSYLSTFSASISEPSSFEQASTDSNWILAMDQEVQALTNNHTWEIVDLPAGKTPISCKWVYKVKYKADGSVERYKA
RLVAKGFTQQAGLDYHDTFSPVVKMVTVRCAVALAAQFGWPLFQMDVYNAFLQGDLFEEVYMKLPPGFASQGETKVCRLL
KSLYGLKQASRQWNLKLTTALTQSGFKQSKSDYSLFTKTNTLGDIVIILVYVDDLLITGSNAALIQEAKDILQCNFKMKD
LGELRYFLGIEFARSKAGILMNQRRYALELVSECGLAGGKTTTTPLEHNQKLTSLEYDTQFNIAGDVELEDRRVYQRLIG
RLLYLAMTRPDISFAVQHLSQFMHAPKKSHHEAALHVVRYIKGQPGLGLLMSSKRSGKINAFCDADWAACMLSRKSVTGF
GIKIGESLVSWKSKKQNTISRSSAEAEYRSMASTVAELVWLQGLLLELGVEVELPMELHCDNKAAMQIASNPMYHERTKH
IEIDCHFIRERLQEGIVKTEYIASKDQMADVFTKALGKQLHNDMLFKLGMLDIFHHPT
>Copia-41_ZM#LTR/Copia 64-4280 via tfasty with Copia-21_BD, 79.7% SW:3969, 2 frameshifts and 1 stopcodon. [Zea mays]
MSTTTTHSSFSGVTSAPSLSTAITIRLSRTNFFLWKAQVTPILRAHQLFGHVDSSLPPPTPVITTGTGADALQVPNPDYL
RCFAFDQLILSALLASMSEEMLGQMTQHTSAVAAWSALHAMFSSQNRAQIMQVRYQLSNAKKADLTAAAYFQKMKGYADT
MASLGHPLSDEEVLGYMLAGLGSDFESFVTTVALRDTSMDLNTFFAHLLSAEARLQRYTSTGEIHSSANAATRHPFNTRS
GGHGGQNRGRGGSGRGSGGGGHNSGRGGSGPKPTCQVCNIYGHDALHCRQRFNHAYQPDDTRERQVNAAVTPSYSVDTNW
YLDSGANDHLTNDLDQLSLHERYTGKDIVQVANGSGLSIAHIGHSLIPGSSRPLYLHNILHVPSVRKNLLSIQKLAHDND
AFVELHPSFFCIKDQKSRRTLLRGKSFNGLYPVPCSKSSSPMSRHAALSSHSVSSDLWHCWLGHPSFSVVDFIVKSNKLA
CTPRQSSRVCDPYQRAKAHQLPFQKSKHVTSPPLELVHSDVWGPAVTSVGGFKYYVSFLDDFSRFTWIYLLKRKSDVEHA
FHLFxAHAERQLNCKLRTLQSDWGGEFRRLSQHITRQGIHHRITCPHTSQQNGVAERKHRHVETGLTLLANSSLPIRFWD
EAFLTACYLINRMPTRVLQNSSPMEALFHESPNYNFLRIFGCACWPNLRPYNSQKLAFRSTQCVFLGYSSMHKGYKCLDR
SSGRIYISRDVVFDEVVFPFASSSTPSDSISTSSLFPSEEPAISNDHMQHYRLDLLLPNGSLEPPFATVSGSTGSRCSDD
PPAAVDQHSSATDDVPPPHTEQHSISPTNCLASPSAAPAPPKVVAEESTFVSIPSGIDAAAPQMVTRSKHNIHKPRIHAD
GTILYNPSRRAFFTTPSSYKTALADDKWCQAMQNEFLALRQNNTWTLVPKPPGQNIISCKWVFRVKQHHDGSIDKLKARL
VARGFTQQYGIDYHETFSPVVKPATVRLVLSLAVSRGWHTRQIDISNAFLHGFLDDTTYMQQPPGFQDASRPDYVCKLHK
PIYGLKQSPRAWYSRLSERLYQLGFSSSVADSSLFIYLANDITMFMLVYVDDIVITSSSPEATRQLLQQLSVSFPVKDLG
QLNYFLGIEVTYNSGGMTLTQQKYARDILSRVHMENCKSAATPLCATEKLSRAIGKPLTDKDAFVYRSTVGALQYLTLTR
PDLSFSVNKVCQFLSKPTVLHWEAVKRILRFVKGTLNTGLSLRPSRSSLLSIFTDADWAGCIDDRRSIGGYAIFFGPNLI
SWNARKQPTVSRSSTEAEYKALANGAAEATWIQSLLKELHVMQSRPPVLWCENLGATYLSSNPVFHARTKHIEVDFHFVR
EKVALGNLDVRHIASGDQIADIFTKRATKQMLQRLRPTLNLVATG
>Copia-44_MLP#LTR/Copia 55-4725 65.5% sim to Copia-6_AG, SW:1358, [Melampsora larici-populina]
MSNREDILDDSQLPTPASTPAPSSEEIDDNHVDSDSSSIDSTHSAHTMVPASHQQINMATTAPEILDTDTPAQRQASKMT
SILHKVAISTKLSSSNYVAWSDSIRFGLMAASYDHYLDAEEVTGQTIDPEIILATKKAIFYWLLASIESTQSTRFISMIS
KFENGIKTTPPSPSLLWKTIRDYHISNSESVKLMLRSDITDLSQGSTKDLLDYIDTFRAKVDAYLGSNGEMSEEEQARQF
VRSLNREWAEKGCDLLDAGHVKFRNLETELKKAYQTRKMFSSNRQQISRAAESSEASQSRRTGRWSTCNKNKCLGRDHPT
KPHEQSECYHHPNNAKKMEDWKRSKQESGEWVEYPRGSRGLNRGGFRGRGRGRGNPQPARNQSNLTDFPNSDDLYSVFEN
LRLEDRDVSYNVEIDGQFSCTARPQLACVGDRCDLVALIDTGASHHMFHDASLFESATLMANHDPGAKLNLAGGGATLDI
HSIGNVNLLNSKGEIIKLKDCLYVPDLSRNLIAGGRLLRAGAVTTVLADPNFRIDHGKKELFIGQFIGEGSMMYVPIKSS
VSHHALRSSISTANQLTILKLHYSLGHPSEKYLKRMWNLGYFDDVLPNNVNTNDFAIITKCPICPLAKNHRLPFSSTRPR
ATKFLENVHVDLSGIIRTSTVNQEEYYILFTDDYSSYRISFGLPNKSAETVFECFKRYISFSERQTGEKLKMFSFDGGGE
FINGILTPYLEDLGINTRITSPHTPEENGVAERSNRTINTKARCMLIQSCIPVKYWYHAISYAVMLQNRTVTTSLNLKNT
PHSLWKNRQPSMKRFHPFGCLAYRHIRKEIRGGKFEPVSRPGVLLGAAEDNHNFVVLDLESNKIYTSHDVTFQPLVFPFM
KDAENNPDWMFIEDLPVEPTEDGEELIDLNPNPPMCPDLCDEEDDVIEERLTPRTITEPPALIEESEVETEEPIPEPIEK
EPTPAAPTPPAIEPRRSGRERHPVERYSPGDSNWIEAHPMRSIVPKGMRCDILSKVYQCREAMKARAEPKSYKMAMKMHD
AEKWKAACDKEMQNIKNMGVWEIVDRPKNAPVVGGRWHFKYKVNPDGSISKHKARYVAKGYTQTEGIDFNDTFAPTGRLA
SFRILVAVAAAKDWAIEQMDAIAAFLNSDLKEEIYLELPEGYDAERADGKVARLRKALYGLKQSARCWSDEVKSKLTSIG
LIQNPHDACLWYGKDEYGLETLLYLHVDDMAITGDKIDEIKDLLKLKWKMEDLGPAHCVVGIEIHATDDGGYALSQSSFI
QTVLERFNSEDCKPASTPFPGGTKILKASESDVIEFQQSGLPYNSLVGSLMYIAQGTRPDIAYAVGALSQHLSKPSLTAW
QMGMHVLRYLKGTQCMGLNYSPKDNIISGNQSWSFPECHTDSDWAGDPSTRRSTTGYLFKLNGAAVSWKSRLQPTVSLSS
TEAEYRATTEAGQEVVWLRGLLSNISLKQNFPTILCSDSTGAVALTQKSIFHARTKHIEVQYHWIREQVEKNLIKLRHIS
NKNMFADTLTKPLHPGPFKELRNQIGLDVVVGQLKQG
>Copia-46_BG#LTR/Copia 184-4350 via tfasty with Copia-2_BM, 63.6% SW:1357, 1 stopcodon. [Blumeria graminis]
MSTAKILKHCKNAPELSKETYLRWCRIFKLSLNTHNAQEYILRKVPDLIPVDEKSTSEMSPQQLVDNDIKSALLQLVPED
VYYIIEALPTAFQMWNAIAAYYQPNSEVYIDGLIKDFWRLNFNSGADVDECATELTKLQSKIASLDPSKRPSDLSKRNRL
LDHFETECNGFHNGAVSFMKLNSHVTFLEAVNLLRDSQRNYLEYNEKAVANLANSGKGMTMKICSFCGRNNHIRETCFKW
IDTPEGSKWASKNPQKAETVMSLKRRFGGSRTNNKDRQDHEYVLSCSTLSPNDVILDTGATHHIFCDSSLFTSMVPVRKS
IETASGRVEPVSWSGSVSFEVNYANNRHQTRTVKLTDVWYLPSCAKNLVSGSQLISRGYKIKTNEYGLGVYSSNGTIVMN
ARPKNGLFCFNMEGSAHSQFLSNNPNALVSEGNKCTIENLLHHRFAHVSAHVLKNISNSDLDLDPKNKKPTDLKLKSTSF
NDCHTCNSCKQVEKINRDQVQRKLNPLELVHSDTWGKCRTNGLLGSLYFVSFTDDATRESKVYTLKSLVEVPEKFQLYRE
EKELQTGRKIKAMRFDGGSEYKKVEFNGILQQMSAPYTQHQNGVSERLNRTLVTMARCMLHHANLPLRFWDLAISSACYI
RNRLPTQPEVRTPHELMTGSIPVVLHLRVWGCLCYVLIQTSDPHRNKLSPTSLKGIFVGYCESTTQYQIYIPSKEGRNKI
IVSANVRFLEDTFWDWGKTSEQQDIHFDRIPEIATEEEVPQERETSCSHDSDSDSEVDSDAEMHSTDSRIETNLPHDPSE
DSEESLPSPFLRPSERHQPPPANLTDLPESSGSVPISNPITLRRSKRIRKPILPRSAWQPRAQIAEEKTFIPRTFKEALI
GNDKEKWREAINEELNSLAIKNVFTPITHVPHERRPIGSRWVFSVKSDGRFKARLVAQGFSQLQGVDYFDTYSPTIHMDS
LRVILAVATFRDWEIHQVDVKTAYLEGDLSEDVYMRTPEGIKGGKYVKLNKSLYGLKQSGKVWYDKLDLQLKTLNFRRST
SDPCIYIHNKSVIVIGVYVDDLVICGEEITDVNMIKQQLSSIFPIKDLSEIGTVIGWKITRDRSCRSLTISQTDYITSKI
ESLGLEDAKGVNSPLEGYDSIIPAEDGEQKADDSAYPSAVGGLGYASNSTRPDICFATSQLARFNSSPYMRHWNGVCRVH
RYLKFTKNHCITYKFGPNTSTLDQERTLKMFSDSDYASDIHTRRSVSGYVLMLGGGPICWQSKKQKSVATSTMEAEYIAL
FEASKQAIWVGKLLRELQVADEFISPNGMTIYTDNQSALALANGTNSSKAKHIDVAYHFTRECVQNGTISIQYIPTKDML
ADILTKPLSFSKAGPICAKLLTGSxTSIL
>Copia-45_SB#LTR/Copia 119-5362. Apparent insertion from 3380-4360 deleted. [Sorghum bicolor]
MGTSGKDAEAMERAWNQASSSLIWPMLSKSNYQEWSMHVRCNLEAMYLWDAIEATDASKVERRRDRLALGAMMRGVPTEM
HSMLLNKKSAKEAWEAIKSMRLGADRVKEVNAHKLLGDFESISFKTGESIDDFAVRIGKLATDLKGLGETTVTDERVVKK
FLRVVPSRYNQVAVTIEMFCDLKTLTIEDLVGRLRAAEDRLEAATDQAADKEKPKLLYSEEEWMAKNKSRMVQGDSSGGK
NNGRYVKKDKTGSRPGGDKTERDKRNCHPSSGTPRRNGRCKKCGVFGHWARECLNKKGGKDEQDDAAHHVADDVDKGPAL
LVAQVCNTVSTPKLGRQELFLKQDRVFPAKYDAGAWVLDTGATNHMTGCRSSLADLDETIQGAVRFGDGSTVKIQGVGAV
TIAGKNQEHRVLTGVYFIPSLRCNIVSLGQLEEAGCRIEIDKGVMVVFDREQQGASRGVVIRTERQNRLYVMKVNLTTPI
CLLSKIEEEAWRWHARFGHLNFRALCDLGVNDMVDGLPLIKKVEQVCDGCALGKQHRRPFPQASSWRASDGLQLVHTDLC
GQITPPTPGGKSYFILIVDDYSRYMWIELLTTKAEALSCFKKFKTASELASGRRLKAFRSDRGGEFNSRAFIEFCADHGI
QHSTTAPYTPQQNGVVERRNQTVVEMARCLLKSMNVPSQFWGEAVRTAVHILNRSPTKSLRGQTPYQAWYGKKPGVKHLR
TFGCTAYAKVVGPGTGKLTDISVRGVFFGYEPGSKAYRVYDPVDDKLLVTRDVVFDEQRPWDWGGDRSKATGAADAVAEA
EAVLSDTFQIDWGDTIQGPTTGAEGNDAEADLPDPDAGEPGSPAPSIPQSGGVLGTPPHTPPAIQWATPPTGQSADSDGV
PLRYRTIPDLLEATDPVEDYDYSGFCLLATEEPRSVEEAMTEQCWRDAMESEMQAIESNRTWDVNLLPPKHKAIGLKWVF
KIKKDPDGNIVKHKARLVAKGYAQRHGVDYDEVFAPVARIETVRVLLALAARGGWEVHHMDVKSAFLNGDLTKTVYVQQP
PGFIVGTGEKVLKLRKALYGLKQAPRAWNAKLDKELLALGFVRSKLDPAVYRRSKVNSFLIVGVYVDDLIISGPDADDIK
LFKSEMKKKFNMSDLGLLSYYLGIEVKQDSTGITLCQSSYAAKILEMAGMSNCNSSDTPMECRLKLFKKKEGEPLNATEY
RSIIGSLRYIINTRPDLAFAVGVVSRYMEAPGREHWLAVKRILTYLKGTMGYGCKYEKEAELKPMLLGYSDSDYAGDPED
RKSTTGVGYFLNGNLVTWASQKQKIVALSSCEAEYVAAAAAACQGIWLSRLIADFLGTKEATVKLLMDNMSAMALSKNPV
HHDRIKHIDTRYHFLRECVEEGKVEIEHVGTADQVADIFTKALGRVKFIELRSALGVVDVHLV
>Copia-41_VV#LTR/Copia 58-4484 via tfasty with Copia-91_VV, 81.3% SW:4483, 1 frameshift and 4 stopcodons. [Vitis vinifera]
MESRTEGSNSEVMSRLEAVHSGSASTTDGIILPITGHKLNGQNFIQWAQSVRIFICGKGKEEYLTGAIVQPKEDDPGYRT
WKLENSMVMSWLINSMTNDIGENFMYYGTAKEIWDVARETYSNIDNTSAIFEIKSILQDLRQGDSTVIEYFNILTRYWQQ
LDIYEELVWKCPEDGLLYKKVIEKERIYKFLLGLNKNLDEVRGRVLSIKPLPSVREVFFEIRRExSRQKVMLGTQNSSKN
LENSALVARGTQSNNNNHQTKKNRPWCDHCRKPRHTKETCxHLHGKPADWKPSRPQQNREGRGYTATTEEDTSGTSSNPG
PFSKEQLEALQKMFQQTLQSTGTTIGTASVAQKGIFSHALNVRQENHTTWIVDSGASDHMTGNLMVFHEYTPCHNNSSIR
IADGTLSRVFGTGSVIISKDITLHSVLYVPKLDCNLLSISRLTQDLNCVTKFIPHMCEFQALNSGKRIGNAEVRAGLYLL
RAEEIQRLPMKTACVVSNPSTKTDSVVMLWHYRLGHPKFSYLEKLYPSLFNKNSKNFQCEICQLSKHTRNSYSIQPYKPS
HPFSLIHSDVWGASRINNITGSRWFVTFVDDHTRVTWVFLMKKKSEVREIFENFNNMVQTQFQAKIQVLRTDNAREYYHN
ILGSYLLENGIVHQSSCIDTPQQNGVAERKNRHLMEVARSLMIASNVPKQLWGEAALTATYLINRMPSRILQFKTPCQIL
LAAYPSARIISSIPIKVFGCTAFVHIHKSQRSKLDPTATKCIFLGYSPNQKRYKCYSPTTKKFYTSMDVTFFENQPFYPK
TAIQGENWSTDEFQFWETEISTTSPLSSSLPPQTDTTLSVPENNSLDVPSVTPKSTTQGSKEVIVYSRKNLKEKPEKPPQ
KEPEDSTSPEQNxELDQDPSNPNSxPGNTIYDLNSSNDFDDLDQPIALRKGVRSCTQHPINNHVSYGKLSQNFQAFITSL
EDDRIPSNIQEALQQPEWKTTVQEEIQALEKNGTWEISELPESKRPIGCKWIFTVKHNLDGSINRFKARLVAKGFTQSYD
IDYEETFAPVAKLNSIRVLLSVAINLDWNLHQLDVKNAFLNGELEEEVYMKIPPSMETPENSGKVCKLRKSLYGLKQSPR
AWFDRLTRVVKKHGFIQCQAAHTLFMKHSKEGEMTLFIVYVDDIIITRDDEEGIGNLKKLLAREFEIKDLGQLRYFLGME
VGRTKEGIVVTQRKYVLDLLQETGMLGCKPVDTPMDPIGKIKSNDSHPTEKDRYQRLVGKLISLTHTRPDISFAVSMVSR
YMNNPTERHMKAVYRILQYLKKSPGRGLYFKKTSSREVEVFTDADWAESLTDRRSTTGYCSYVWGNLVTWRSKKQSVVAR
NSAEAKFRAMAHGICEGMWLQRILKELGIISNSTMTVLCDNKATISIAKNPVQHDRTKHVEINRHFIKEKLEGGTIRLMY
IPSSRQTADILTKALPKATYENMKSKLGMLDIYYPT
>Copia-37_Pru#LTR/Copia 98-4504 via tfasty with Copia48-PTR, 72.4% SW:3329, 1 stopcodon. [Prunus persica]
MASSSSSSSSSSSSSVLSFPNFSTLVSTKLSETNYLLWESQVQPYLIGQNFWRFIDGSHPCPPAVLTPSTDKAVDTAQAL
VAPVPNPEYLTWYQTDQSLISILRSTLTEPVLAQVVGLTTSQAVWDCLRQNFSQQSLANATHLKFQLLTITKGTKTVSEY
LALAKSLSDQLAAIRAPVSSDDLVSYVIRGLGPDYAMLITAILQFPPLPTFADLRARLLAFDAQQSLTTLMASSPPPQAF
YSSHPPPSRSGHPRGSRGARHGSQFHRSGPSSSASTRPTFSSSHQPHNRSSRSFQPTPSVLGPPPTPRPSLQCWNCQQFG
HIAARCPLSSRDADFSPHFAGMHISQTSDPNWYLDSGATNHMTNDARTLTNVSSTSDQVLIGNGASLPITHSGNVAFSSG
SFAFNLSDVLLVPSLHKNLISIAQLTHDNPVSITFVSSGYVIRHLPIGVILFQGRCSDGLYPVLPSLASKLVSCSKSAFS
STVSSSSLWHHRLGHPSNKVLSALVSQSLLGSPFRLSNNSCSHCALAKSVRLPFSSRAHCSHEPFHLIHSDVWMSPVASF
SGFRYYVLFTDDFTRFSWIFPMRLKSEVFHHFSTFVSYVETQFSMHVKQFQSDGGKEFDNGNFKQFCASKGIIHRFSCPH
TPQQNGLAERKHRHIADMGRTLLLTAHLPFTFWVEAFCTAVYLINRLPTPLLKWDTPFRRLFRKDPDYSFIRTFGCTCYP
YLGAYVSHKLQPRSLACVFLGYSANHRGYRCYHPPTGRVYHSRHVVFHEHDFLYSAPTSTPSHATAANGLVSVPVVTASS
PLHGPAASPLDIGPQSLLEPISPLTQSAHVEPPGLVAANLNSSPSPALVITPASAPTAATHLSAPAPLAPAPTDSTPVSA
TAPPSPSAPAPSPAVAPQLPPPAQVSDRPPAPPSARTSPVHTRSKSGIFKTKFRSNFMVRYPIPSAFLALADSDLEPTCY
THASRFSHWRQAMYDEFNALLKQGTWSLVPLPLSVRAVGCKWVFKIKRNSDGSIERYKARLVAKGYHQQPGIDYFDTYSP
VVKPTTIRTVLSLAISSGWTLRQLDVNNAFLHGTLSEDVYMQQPPGFIDPTRPQHVCKLHKALYGLKQAPRAWFQRLSSF
LICYGFLQSRADSSMFIFRNNSHMMVLLLYVDDIVLTGSSTSSLLNFIRILGTEFDLKDLGHLNYFLGMEVTYLSGSLHL
TQNKYTIDLLQRSNLLECKPCSTPMASKGSLSRTTGHPLSDPSIYRQLVGTLQYLTLTRPDIAYAVQFVSQFMGSPTDLH
MEAVKRILRYLKGTLGHGLPFHPSPHSTILVAYSDADWAGCPDTRRSTTGYCVFLGSNLISWSAKKQRTVSRSSAEAEYR
ALAYACADTIxIQGLLRELHFPLHHPVLLNCDNLSATYMAANPVFHARTKHVALDYHFVRERVASGTHKVSFIPSAAQLA
DVFTKGLPTDRFARLVSKLVSPPPPSLRG
>Copia-37_DPu#LTR/Copia 923-5448 via tfasty with Copia-7_DPu, 77.2% SW:4170, 4 frameshifts. [Daphnia pulex]
DRNEAGELVNDAAIRLWTRKNITAINFIFASITKKMKENLYTPGLNAAQIWAKLNLQYQLQTEEQLHLLWQQYYDFKHTA
GTFPNIIHFFSLTEQVSLLNRDDMRTMIQKLSNIADQLREREQILPEVQLVSKALATLPENFRIVRTVWTSLPANDRTLD
HLLQRLITEESVLKSYQTKTEHNNEAAFTANNSRQRFNSGRGGSGRERHGVQGGFVDKRPRCGHCNSPTHEEKVCFQKHG
YPPNWNTTKRGRGRGRGGGNPSNSSNALLSLSNLDPRSILTFLVDSGASKHMSDQRSFFTTFKPIKAGTWSVKGKYFFFY
FFFIGQKELLISNLFSLIPGIGDSELDALGVGNIDVIVEVDQTTTSRTLTEVLYVSGLGSNLFSVSAATANGLIVTFDDN
KVSYYPQNQLHHKPFTIFLWDLSQVLFKRNGETVLTGEKQNETLFQLHKKPDIHLTQSDNIQPLTLVALRASIITWHRRL
GHIGYHTLLKMVKEDLTIGLNINGDRDIPASLCSNCEFGKFSRIPLKTGRNRATRIGELTHSDVWGPIATTSIGGARYFV
TFKDDYSGYTTVYFMKRKNEVPALIRLYRALLLNETGFYMLTLRSDNGKREYVNKENAEWLAQHGIRHETSAPHTPEQNG
SAERLNRTLLEPVRCMIIESGLPACLWAEAISYTTYIKNRVLSRTAQLTPYEYWNEKKPDMTHIRIFGSKAYVRNPTVSS
KLEPRSQEGFFVGRCSTQNASRIYIPTTEKIVVSKDVKIDETILYRDHNSKGSTTIKGSFTYILSLIFLYIYIYTLCIFI
CTAIYISIYVSMFCTYSIYIYIYFFISTYIHTSYYSCKIIFFSFFPSKEQLQLAESNEESSMDTRETDVPITVETPNEEE
ACPVSAIEDEIPLITDETLHEGSNLPTDPLIHNEATQEPGMIIDQDAHDATPIAAEVPQANSVDQPRRSTRIRARQIQSV
AKQAVLSNDSAIQDSTGANPTEPETYREAINCPEAEFWIEAMNEEYNSLIKNNTWTLCRLPPDRKAIEGKWICKYKPGFK
TTSPRYKARFVIKGFSQIHGIDYTETYAPVAKTFSFRMIMAIAAEKDLEMIQLDVKTAFLYGTLEEEIYMKQPEGFIIPG
KEEEVCRLVKSLYGLKQTSRVWNVKFNEFIVALGLERSKCDPCIYYRHLRQGEPDEEITFFILYVDDGLILSNQNAVLLK
MIEFLGKEFEIRSLPADRFIGVNIERDRTHRTIHLSQPDYVKTILARFGMTNCSSITVPADPCVKLSPSMCSRTEEEEAP
MNNVPYLEGVGSLMHLANLTRLDISFAVGQVSRFSQNPGMEHWKGLKRILAYLRKTVNHGLLFGGGSNELCGYVDADYAG
DLENRRSTSGAVFILNNGPISWHSRRQTCVALSTTESEFIAASDGTKEATWLRRLYAELGGADLSVPLHCDNQGAIAQIL
NPIFHQRTKHMDVRFFFVRDAQQEGKIDVIYIETELQLADIFTKALPTPRFEMLRHNLGVQELNIQNA
>Copia-38_BRa#LTR/Copia 66-4385 via tfasty with Copia-21_EPa, 88.1% SW:5666, 2 stopcodons. [Brassica rapa]
MVETGGKNNEPRSISPYSLFASDNPGAVITSVLLNGDNYNEWSSEMLNALQAKRKLGFINGTLKKPDEGSPDLENWLAVN
SMLVGWIRTSIQPKVRSTVTYISDAHQLWSNLKERFSVGNTVRIHQIKAQLASCRQEGQSVLDYFGKLSTLWEELQSYQP
IHVCSCGAATAIAKEKEQEKIHQFVMGLDDARFGAICTTIIGMDPLPSLGEIYNKIVREEQRIVAARGHEQQQEAVGFLA
RHDGSQSNNVEARQESSLLKPRNMLCSHCSRSGHEKRDCWQIIGFPEWWPDRNNSGGRGRGRGGRNAGSGGSGRGRAQAT
AAHTTAAHATSSNTSSIPGLTSDQWKILTQMIQEKSGSNSSDKLSGKKELGDVILDTGASHHMTGNLSLLTNVKNVPPCS
VGFADGSKTLATSVGVFSLSDTVLLDNVLYVPALNCTLISVSKLLKQTNCLATFTDTICVLQDRFSMTLIGASEERDGVY
YVTDVVSAKSHKAVGGSDQALWHQRLGHPSFSVLSDLSFCSSKVAGSRPCDVCYRAKQTREVFYDSMNKTKDCFSLIHVD
VWGPYRVPSSCGAVYFLTIVDDFSRAVWTFLLLAKSEVKQVLVQFFAYTEKQFNKSVKMKRSDNGTEFMVMSSYFRENGI
VHQTSCVATPQQNGRVERKHRHILNVARAIMFQASMPIKFWGEAVLTAAYLINRTPSSIHKGKSPYEILHGVTPDYKQLR
VFGSECHVHRTSRDKDKFTARSRVCVFVGFPFGKKGWKVYDIEKDEFFVSRDVVFREDIFPFAAKITGSQESVPQVEEFD
EDWLITPVDRGSNEVTGDIDEHVPPVLEEVSAAEVLVPQEPSATSDVLPQENLGRGCREKKQSVRLKDFVAYNAAPVDSD
THHTLSPCSHQSLMPALPGTSFYPLSDFVSDDQFSPGHKAYLTALTAASEPKNYKEAVVQKVFRDSMITEVEALEDQHTW
DITDLPPDKTALGSQWVYKIKYNADGTIQRYKSRVVVQGNKQVEGEDYSETFVPVVKMNTVRTLLRLVAAKQWEVYQMDV
NNAFLHGDLEEEVYMKLPPGFRHKFPGKVCRLRKSLYGLKQAPRCWFKKLSDALLRFGFSQSYEDxSLFSYTRGNIELRV
LIYVDDLLICGSDAYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVCxGSEGIFLSQRKYTLDILAETGNLGCRPAATPIEQ
NHGLSTVVSPLLEDPKRYRRLLGCLIYLLNTRPELCYSVHILSQFMKTPKIAHWEAALRLVRYLKGSPGQGVLLKSDTDL
TLTIYCDADWSSCPLTRRSLSSFVVMLGGSPVSWKTKKQKTVSHSSAEAEYRAMAAALRETKWFRRLLKELGIDQRAPTR
FFCDSKAAIHIAANPVFHERMKHIENDCHSVRDAVKDRTIVTEHIRTNDQNADILTKSLGRVQFQKLLSKLGVQDLHTPT
>Copia-40_ST#LTR/Copia 200-4981 via tfasty with Copia-74_ST, 75.6% SW:4512, 1 stopcodon. [Solanum tuberosum]
MAIGTDQPTLTAETQQTQIHHDSNNALYVHPSENAGSSITPVVFDGTGYRSWRRGILRALSVKNKTGFINGKIEKPAPTS
PTYDQWERCDNMVTSWILNSLSKDLADSLQYVNNAKELWEELEDRYDQANGAKLYQIQQELSNLTQGNLDVTGYYTNIKR
LWEELATLDVTTQCTCSCTCGGKNKLHKAEQDRRLIQFLMGLNEVYTVVRGSILMMNPLPTMAQTFSILVQEEKQREVKP
HSRVHLDSTSLNVSASSSSGSRHSIAGNNTSTFRTNYTPNRGGGKGVYKPNPTSNSSSGYYAGSSSNSGNSFRTYPPNHN
KSNLLCDYCKKSGHTEEKCYRLHGFPQDFKFTKGRNSGSAANVHGNSRSSISEKYEEQENNLTHSLTQDQYNQLLNLLGN
IHVHGEATNDGHRDSVDNLANGHGAVNLAGILACHSSITEFGKLSCKCVASSAASWIIDSGATNHMTYNKALLTRIRPLA
YPFLVTLPNGYKVKVTEIGDAYLNSALTLYQVLFVPSFKFNLISVQCLASQLKVVISFTNSSCLMQGPSLKSPLEIGSAK
DGLYFTCxRCPNCSKSSGLSSLVSTPPFSVSHPVSHEKIPFPCTPFVRSFHENNKDICWNPQQPVTNLCPADSHKSCMSH
GNVDHLWHARLGHVPFVKMRGISTIPFSFAPKQPFTCTICPMARQARLPFPNKTTIQSTEIFELLHIDLWGPYHTPTHTN
QKYFLTMVDDFSRSTWTQLLSCKSNSLQTIKALIYLIENQFKTTVKSIRTDNGLEFTNKETSDFLQNKGIIHQRTCPYTP
QQNGIVERKHKYLLETARALLYHSKLPLQYWGECVLTATYLINRLPSTTLNNKTPFEILYNKQPTYSHLRSFGYLCFPTT
LKTHKDKFEPRSTPHIFIGYPFNTKGYKVLDLESKRIHISRDVTFHESIFPFADVFPDSSFISVLKNLRNNFTILNMLDK
DITKEVTNIDDHVTSPFVLDNVTADNTQTNPMSPTNTHTEPTITQTNSIPTIPTETHNEPALRRSTRTHTVPRYLSEYTY
KLPSSQSFLSTSIPHISHHNSNHISLTSFCLDSQQLMQHISHDIEPFSYEEAFLDPAWQAAMTSEFKALYDNNTWDLVPL
PAGKKPVGCMWVYKIKHRADGTVERFKAKLVVKGYTQQAGIDYTETFSPVVKMITVRTLIGLAVKKGWGLYQLDVNNAFL
HDDLHEEVYMALPQGLLVDDRRMVCKLRKSLYGLKQASRQWYEKLATTLCSRGYSHSVSDYSLFYRKVGMSVVFVAIYVD
DIILTGTDLTEIESLKAHLHAQFKIKDLGKLNYFLGLEILYKDNGVLISQKKFAADLIKEFDCSNYSTTSSPLDPSVKLS
SNEGTLLTNPTYYRKLVGKLNFLTITRMDITYSVQHLSQFLQAPREPHLKAAFHVLRYLKNDLSQGIFMTKHTDCTITAY
CDSDWAACSDSRKSVSGYIVFLGDSPIGWKSKKQTTISLSSAEAEYRAVRKVVGELVWLDRLLGELTEPCSLPISVFCDN
QAAIHIAKNPVFHERTKHIEVDCHFVRNKLQEGLIALHHVSTTEQMADILTKALSGPSHSNILRKLSVTTSLPT
>Copia-38_GM#LTR/Copia 73-4042 via tfasty with Copia-8_Pru, 84.4% SW:4343, 2 frameshifts and 1 stopcodon. [Glycine max]
MSDGQSSAKIPHFDGLHYDHWSELMENFLRAKGLWNLVDSGVREENDTTTDYKVKHYLFRAIDRSIFKQILDRSTSKIVW
DSLKRKFGGNEGVKKSLLNALRREFEVLEMKEAETITEYFARVMAVANKMRSNGENMPDSKVVEKILRTLTERFTYVVVS
IEESKDTAAMSIDELQSSLVVHEQKFKRVSRDDEQVLKVESSRGRGRGTYRGRGRGRGRQSFTKAAVECFKCHNLGHFQY
ECPQWNKEANYAELDEEEELLLMTVVQENEATRQDAWFLDSGCSNHMCGDKGMFTDMVEGHKHSVKCGNNSxMSVAGKGS
VRLVFDGTTFLVRDVYYVPVLRNNLLSMGQLQEKGLAIFIKHGRCNIYHPSKGLIVHTNMSANLMFVLFNKSSEVTAPIE
ECLHTSSDLTYLWHQRYGHLSYKGLKTLQTKKMMRRLPQLEVSSVTCTDCFTGKQHRNPIPKKSEWRASKVLELIHADIC
GPIEPISNSGKRYPLCFIDDYSRKGWVYLLSKKLEALECFKSYKKLVEKEAEASIKCLRKDRGGEFNSLNFKSFCEEEGI
KRQLTTSYTPLQNGVAERKNRTVMNMVHCMLSSKKVPKPFWTEAVNWTFYFLNRCPTLAVKNVTPQEAWSGVKPSVEHLQ
VWGCVAHVHIPEAKRGKLDDKSFPCILLGMSDESKGYRLFDPKTKRIVVSKDVMFEEEKSWNWGPNYKEQIEAELVWGDD
DFSSDESEGEHRDEGNSDRFVEDMEFDSEGENDGNNARGSEARNEAGSSQENVIQGRERRQPAWMREFVSGEGLSEEEEA
EAYAVQDVVGDDPTQFEEAVKHEKWRKAMDSEINSIEKNQTWELMDLPSGAKTIGVRWIFKTNLNELGEIDKYKARLVAK
GYSQQHGIDFTEVFAPVARMDTVRMIVALVACKGWNIFQLDVKSAFLHGELSEDVYIEQPKGYVKKGKEHKVYKLQKALY
GLRQAPRAWFSRIESHFVKKGFQKCPNEQTLFIKRGMGDNILIVSIYIDDLIYTGDDKGMMIEFKQSMMQAFDMTDLGKM
RFFPGIEVLQKPEGIFLCQRKYATDILKKFAMSESKHVKSPIVPGFKINRDVDGAAVDDTYFKQIVGSLMYLTTTRPDIM
YSVSLISRYRSKPIELHLQAAKRILRYLNGTTSYGIFYKKGGAEDLFAFTDSDYAGDEEDSKSTSGYVFFLSSGAVSWMS
KKQPIVTLSTTEAEFVAAAACACQAVWMRRVLRNLNHAQEGSTVIMCDNSSTIKLSTNPVMHGKSKHIRVRFHFLRDLVK
DGEIELVHCGTQKQVADLMTKALKLEAFQKLRKKMGMLDFTEVN
>Copia-48_SB#LTR/Copia 21-4349 via tfasty with Copia-34_ZM, 86.9% SW:5105, 1 stopcodon. [Sorghum bicolor]
MQYGGSVSPPREPAKKKRVIPRRSTAEAEMSYSGASASSSVRESSLVWPMLDxGNYTEWAMLVQCNLEALEIWQVIDPGT
NVKRSQDRQAMSALLRSVPKDMWQMLGNHKTVKEAWEALKLMRLGAERVKEVNAQRLLQNFENITFKDGESVDQFGMRIT
NLVANLRTMGETVEDSRVIKKFLRVLPPRFTPIVVTIEMFCDTKTMKVEERVGRLRAADDRLSDKPVEQVTDKMGRLLLA
EEDWLEKHKHRFHTTPAKEGGGTGGSAQAKNKQPAARPEGGGSGSVKLTTMGTPRRKGRCRNCGIYGHWAEDCKRSKKDK
KKDAKEPEANMAVHDHGVHGAVLLMATSGQEEQEVATQVVHLVEKDVVPVDCTDGVWVLDTGASNHMTGTRSALQSLNDK
VRGTVRFGDGSHVEIHGIGSMVMQGQHQQHKVLTDVYYIPKLKSNIISLGQLEEKGCEVSLKHGRLKVIDPEGTLLISAP
RTKKRLYTIQLGLTDPVCLLMKHNDEAWQWHARFGHLNFRALRDLGRKGMVDGMPVVDHVEQVCDGCTLGKQHRKPFPEA
SNFRAEQGLELVHAELCGQISPKTPGGNSYFLLVVDDCSRYMWVEFLKTKDQALDYFKKIKLRAEVDQGSRLKALRTDRG
GEFISNLFSVFCTETGIKHYTTTPYTPQQNGVVERRNQTVVEMARCMMKSMCVPAEYWAEAVTTAVYVLNRSPTRSLKNQ
TPFKVWHGKKPNVAHFKTFGCTSHVKLMGPGLTKLADRSKKMLFLGYEPGTKGYKLFDPETNRVTVSRDVIFEENVPWEW
TRTNGSNHTEPDTFTVEYEVTEQNPTIGQQQAVSGNGGALGDQGSMAQGGGDHQVSPQPHNTPGTGSAGQGSTGTPANSP
LAAPAAGNETPSTENSETWGGPLRYRNLTDLLDSTDPILDFEYSGMCMLAADEPVSVEEALEHDCWKKAMQEELDSIMQN
NTWEASELPVDHKAIGLKWVFKVKRDPARNVLKHKARLVAKGYAQIQGVDYDEVFAPVARLETVRLLLALAAQGEWEVHH
MDVKSAFLNGELMEEVYVHQPPGFTSSSAGKKYLKLNKALYGLKQAPRAWNYRLDRELVKLGFSRSDEEHAVYRKGTGAS
LLLVGVYVDDLVICGPNSGNIVNFKQQMMKSFNMSDLGLLSYYLGMEVRQKPGVITICQSSYAKKIVEMCGLKGCNPVDT
PMEQHVKLLPGKPESVVNATKYRSVVGSLRYLVNTRPDIAFSVGMVSRFMESPNAEHWSAMKRIIRYIAGTTDLGCKYVK
GDHAELLGYSDSDHAGDLEKRKSTTGIVYFLGQNLITWTSQKQKVVSLSSCESEYIAAAAGACQGVWLSRLLADITGGAV
KQFELRIDSKSAQELSKNPVHHERTKHIDTRYHFIRECISEGMVEVNHVSTDDQLADILTKPLGRLRFMEMRLRLGIIKV
EHD
>Copia-58_Mad#LTR/Copia 23-4024  [Malus x domestica]
MDNKSDNMALKIINQDVYKLDKFDGSNFTRWKDKMRFMLTVLNVIYVLDPKLEPIREPSDKDSDNIVADRKKREEDELVC
RGHILGTLSDRLYDLYAHIQSPKEIWEALEHKYTTEKRGTDKFLMFKYYEFTMFDNKPILDQVHELLVLVSKLRELKIVI
PDPMIVGAIMAKLPQTWNNYRKKLLHMVEDISLEDLQKGIQIEEETRNRDKNFANQDFSKVHIVEGNKYKKNFKVKIDKG
KFKKTNSNNNQKNANGVCYHCGKKGHYIRDCRHRKASEEYANKTNSANMVENSGIDNIVAMVSMMHIGMITELNMAAAIK
SSDWWLDSGATIHVCNDKAQFKTYEASTDNQEVLMGNHNSAKVLGKGTVELQFTSGKKLTLLNVLHVPEIRKNLVSANLL
CKNGIKTVLESDKLIMSKNGMFVGKGYSCDGMFKLSINNKVNSSAYIVESSSHLWHLRLAHINFRSLKYMRTLGLIACND
DYNDKCETCIQAKMTKKPFPTAERNTNLLDLIHSDICEFNGVLTRGGKRYFITFIDDCSKFTYVYLLSNKDEAFECFKRY
KAEVENQKGRKIKCLRSDRGGEYFSHEFDIFCEEHGVVHQRTAPYTPQQNGLAERKNRTLTEMINSMMINANTPKYLWGE
ALFTACHIHNRITSTKTHVSPYEIWKGRKPNLSYLRVWGCVAFYKALDPKRSKLGPRGIKSIFVGYAENSKAYRLLNLDS
NTIVESRDVEFIENKFYNDYSVSGKENDQTHFSNPSTSQSQGEKRKQSETVNEPRKSQRVRKEKTLGSDFISSQSIVFLV
EGNRTKVLKKIPILLNVEDDPKSLSEALTSRDAAFWKEAIDDEFESLISNQTWVLVDLPQGSKAIGCKWVFRRKYNTNGS
IQTFKARLVAKGFKQKKGIDYFDTYAPVARLTSIRILFALASLYNLHVHQMDVKTAFLNGDLDEEVYMEQPEGFVLPGNE
KKVCKLVKSLYGLKQAPKQWHEKFDFVILSYGFRHNSADKCIYSKFTNDYGVVICLYVDDLLIFGTNMKGVSETKEYLNS
KFKMKDLNEVDTILGIKVKKHSGGYALCQSHYIEKLLLKFKHLQIKEANTPYDPSETLLNNSGRSVAQLEYASVIGSLMY
AMHCTRPDIAFAVSKLSRYTSHPGTAHWKAINRIFGYLKRTINLSLTYSEFPAVLEGYSDASWITSANDNKSTSGWIFTI
AGGAISWASKKQTCIAHSTMESEFIALAAAGKEAEWIRNLLLEIELWPQPMPSISLYCDSEATLSRAYNKVYNGKSRHIS
LRHEYVKQLITDGVINIVYVKSSNNLADPLTKALSRALVVSTSSGMGLKPFTEN
>Copia-57_VV#LTR/Copia 92-4197  [Vitis vinifera]
MMSSTQSSGLQAGTLPSSTGATQTMQMLNHALPIKLDRNNYILWRTQMENVVFANGFEDHIEGLKICPPQKTSSGETNPD
FVMWRRFDRMILSWIYSSLTPEIMGQIVGYQSSHAAWFALERIFSASSRARVMQLRLEFQTTRKGSLTMMEYILKLKSLA
DNLAAIGEPVTDRDQILQLLGGLGADYNSIVASLTAREDEMSLHSVHSILLTHEQRLSFQNSVAEDNVISANLATPQYQH
FNNKRSSGQNRQSGFNTRRGTNGGRSQSSQHRPQCQLCGKFGHTVVRCYHRFDINFQGYNPNMDTVQTNKPNAKNQVQAM
MASPSTISDEAWFFDTGATHHLSQSIDPLSDVQPYMGNDKVIVGNGKHLRILHTGTTFFPSSSKTFQLRQVLHVPDIATN
LISVSQFCADNNTFFEFHPRFFFVKDQVTKKILLQGSLEHGLYRFPARFVPSPAAFVSSSYDRSSNLSLTTTTTLWHSRL
GHPADNILKHILTSCNISHQCHKNNVCCACQFAKSHKLPFNVSVSRASHPLALLHADLWGPASIPSTTGARYFILFVDDF
SRFSWIYPLHSKDQALSVFIKFKSLVENQFNSRIQCLRSDNGGEFKAFSSYLATHGIKSQFSCPYTPEQNGRAERKLRHI
IETGLALLATASLPFKFWLYAFHTTIFLINRLPTKVLNYQSPFQILFGKSPNYHIFKIFGCLCYPYIRPYNKNKLSYRSS
QCVFLGYSSNHKGYMCLNPLTGRLYVTRHVVFHETVFPFQSTPDQSSSVVTIPTPAFLPCSSPPVSSLRSHTTPSTSSPP
LTNMPSSTISLPDLIQVPFADISTSEPHPTNQHPMVTRAKNGISKKKVYFSSHISEPTTFTQAVKDSNWVLAMEKEFSAL
QRNNTWHLVPPPSNGNIIGCKWVYKLKYKPDGTVDRYKARLVAQGFTQTLGLDYFETFSPVVKASTIRIILAVALSFNWS
VHQLDVQNAFLHGDLEEHVFMQQPPGFINSQYPSHVCKLNKALYGLKQAPRAWYNKLSTSLLGWGFQASRADSSMFIHHS
THDVLILLIYVDDILVTGSSSAQVSSFITRLNYSFALRDLGYVNYFLGIEVVSSGTMFHLSQHKYTQDLLSRTAMLDSKP
ATTPGLLGQTLSHLDGEPFSDATLYRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWLAVKRILRYLKGTLSYGIQ
MQQSTSLDIHGYTDADWASCPDDRRSTGGYGIFLGPNLVSWSSNKQKVVSRSSAESEYRALASATSEMIWIQYVLQELCL
SSSSPPLLWCDNKSAAHLAANPVFHARTKHIEMDLHFIRDHVLRKQLVIQYLPSAEQVADIFTKHISSSQFLSFRTKLSV
VPSPVSLRG
>Copia-58_ZM#LTR/Copia 60-4924 via tfasty with RLG_scAle_5_1, 74.3% SW:4341, 1 frameshift. [Zea mays]
MAADAPSDADIVARRAADARRSADDLRAAEDRRLQQEANDGAQRRSAETAAALQARADAAAAAAAERRRLAADVARHEQA
LAAARQRLETACAADDGEIEHDEVPAADAPGRDVRRDGSDPDPVAALHAQALGILNIRGLVPVVLDLATPSFSKWRRLFL
LVLGKYALADHVLCDASFPDVAPWVRMELHVLSWLYGSISPELYEIVTTAAPTARTTWLALEEQFVGNRETRIVLVDTEF
RTLCQGALSVSDYCRRMKTLADSLVELGEPISDRLLTINLLRGLNDRFAHLRSYLKRQRPFPSFVEARSELLLEELSMGP
GAASAAPSALVTSAPTSAPGTATALAAGPPPPQANGGYNRRRRKGKHSGGSGPSNPGGARGAPGGARGQATPQGSWPNIF
NPWTGSIQMWPGPVQGHRHPASPQALVGGPPSALGPPPPTPTGWAPFTWPTANASTWPAPVPAAPWAVQQASPTQQHAAP
GPFGPWDQHALAGAFNTMTLTPPTGEWYMDSGATAHMASTSGILTYCHPPSSSTPSSIIVGDGTSLPVVSTGSTHMGPIH
LNNVLVSPSIIKNLVSVRQFTIDNNCSVEFDPAGFSVKDLRTRSVIARCNSSGDLYPLSIPLSSTTTPQVFLTSASSQLW
HHRLGHISHDALRHLTSSSSISCNKGSTAPDICHACQLGRHVRLPFSISQSRAPRHFDLVHCDLWTSPIPSISGYKYYLA
ILDDCSHFLWTFPLRLKSDTFPTIANFFSFVATQFGTTIKSLQCDNGREFDNSHTRAFFLSHGVHLRMSCPYTSQQNGRA
ERVLRTVNNIVRSLLFQAHLPAPYWVEALHTATYLLNLHPTSTLNSSTPHLALFGRPPSYDHLRVFGCKCYPNISATAAH
KLAPRSTMCVFLGYSSEHKGYRCLDISTNRIIISRHVVFDESSFPFAETPPSSALPTNLDFLDLFSEQVPVPPIGALPSS
TAGQRTSAIPPGPLQQAAQPAARAGPLDGQPQPPPRPLPQAAHPAARTPASPGPLNDQPRPPPGPPAPGPPTSPGLSSGP
IVPGLPLSPGTRAAAQLHPAGASDNLPWRWGTTDRHRSARHPAATTSPVPVGSVPALPVVNSHGMRTRAKSGFHQPRLNL
QATTPAASPIPSTYRRALDDPLWRRAMEDEFQALLTNNTWTLVPRPSHANVVSGKWIFKHKFHSDGSLERYKARWVLRGF
TQRPGVDFDETFSPVVKPATIRTVLSLALHQDWPIHQLGFIDPHHPDHVCRLNKSLYGLKQAPRAWYSCFASHIRSLGFI
EAKTDTSLFIYRHGTASAYLLLYVDDIILTASTSALLRQIISSLQQSFPMKDLGPLHHFLGITVTRSATGMLLSQRQYTL
EILERAGMTGCKTCATPADTQSKLSSSGAPVSDPTLYRSLVGALQYLTFTRPDITYAVQQVCLHMHDPREPHLAAAKRIL
RYLQGTPDLGLFIDRASSPTTLTIYTDADWAGCPETRRSTSGFAAFLGTSLVSWSSKRQHTVSRSSAEAEYRAIANGVAE
ASWLRQLLQELGQPLQQATLVYCDNVSAVYLSTNPVQHQRTKHIEIDLHFVRERVAAGAVRVLHVPTSSQFTDIFTKGLP
STVFIEFRSSMNVRPADVPTAG
>Copia-59_ZM#LTR/Copia 63-4013 via tfasty with Copia3_OS, 88.0% SW:4670, 2 frameshifts. [Zea mays]
MSTTMKYDLPLLDLDTRFSLWQVKMRAILSQSDRDLDDALDGFGNKDARTWTDEERRKDRKALAHIHLHLSNNILQEVLA
EKTAAALWLKLESICMSKDLTSKMHVKMKLFSHKLQEGGSVLTHISVFKEIVADLTSMEVKFDDEDLALLLLCSLPASFS
NFRDTILYSRDTLTVAEVYEALTAKEKMRQMVNSEDAAGSSGEALYVRGRTDQKKSNSGGKGKGKNQRGRSKSRGPSDEL
FCKYCKKTNHVIENCYKLQNKEKRNKEKGKTGGTVSVASENNSDNGDVLIAFAGCAADDAQWILDSACSYHGCTKKSLFS
TYEAVQNGGTLRMGDNSPCTVVGMGTVQIKMFDGIVRTLTEVRHVPSMSRNLISLSTLDTKGYKYTAGDGVMKVTKGSLV
VIKGDLKAENLYVLRGSSGSANAVVASDSETTKIWHMRLGHMSAPGLAELSKRGLLNGCHADTLDFCEHCVFGKHKRVKF
SSVVHNTENILDYVHADLWGPSRIPSHGGARYMLTIIDDNSRRVWPYFLKQKSDAFESFKVWKTMVEKQTERKLKVLRTD
NGMEFCSGDFNSFCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNSGLSRKFWAEAASTACHLINCSPSTAID
KKTPIEVWSGSPMNYSQLRVFDCTAYAHVDNGKLEPRAIKCVFLGYGSGVKAYKLWNPDTQKAFFSRNVVFNESAMFPSV
VSTSATNQNSESISVQVEHGGDVDDHAPPSAEPAENSVSEISSPVVESHPQSLAEGRTRRQIVRPQRLIQECNVAFALAV
AEEVDNVQEPLNYSEAILCTDSEKWMGAMHEEMESLDKNGTWELARLPSGKKAIKCKWIFKRKEGMTPKEPPRFKARLVA
KGFSQIPGIDYSDVYSPVVKHSSIRTFLSLVAVHDYELEQLDVKTAFLHGDLEEDIYMDQPEGFIVPGKEDYVCRLKKSL
YGLKQSPRQWYKRFDSFMLSKGFQRSQYDSCVYLKFVNGSPTYLMLYVDDMLIAAKSMKEITALKAQLSSEFDMKDLGAA
KKILGIEIVRDRKSGLLYLSQKNYIEKVLRRFNMQNTKPVSTPLAPHFKLSAKQCAETDAELEYMSKVPYSSAVGSLMYA
MVCSRPDLSHAMSVVARYMSNPGKEHWKAVQWIFRYLRGSSSACLCFGKSGDGLIGYVDSDYGGDLDRRRSLSGYVFTIG
DCAVSWKARLQDTVALSTTEAEYMAIAEVTKEALWLKGIYSELCGIKSCIIIYCDSQSAIHLTKDQMITEKSKHIDIRYH
FIRDIIDKGLVKVCKISTDNNPADMMTKHVSVAKFEL
>Copia-59_ST#LTR/Copia 51-4530 via tfasty with Copia-74_ST, 69.0% SW:3223, 1 frameshift. [Solanum tuberosum]
MTGETAATLTTTQTITSNTSVIDHNHPYHLHASDAPGMTIVNNPFDGKGYQGWKRCVLIALSAKNKLGFITGAQPIPADD
SPDLQAWNRCNDMVTSWILNSLSKEIADSVIYSRTVRELWMSLEHRFGQSNGAKLYHLQKELSKLIQGTSNIAGYFTKLK
RLWDELDSLNTNVKCSCVCICEGKQKLQKSLEDERLMQFLMGLNDIYSQARGNILMINPLPDINLAYSLILQDENQRESY
VNSTVNPDSSAFMVGNSHQYRISKQGQRSIASSSKFGNVYPRPAPAGSQQTQLQRFPRQNQNPKFKGKKAKYNPNVTCTY
CGKTGHVELNCFRLIGFLDDFQFTNEKGFNNQVKGNVDQIRGNGVMTMEETDNKQSFGIDISNQNYSQEQYNQFVKMFKH
MKMEEGTNSGMEINANAVAGTIIKYLGSCFSVTNSASEHMCFDSTSFRSLSSLTPPLTINLPNCQTILVTHIGTVSLFSD
LILENVLYVPSFKYNLMSVHKFFNQFSCTLLFTLNHCVLQGLSMRRPQVFGEVSEGLYLLKPKVKESVFNFSKNKTVLTS
TVSNSSSVSFPCFSNASSFSLPNCSSTTSNVKLWHIRLGHLPFSSMKNVSFISIPSNSDCFCDICPKARQSRPPFPISHI
STKSIFDLIHIDTWGPYKVFTHDNYKYFLTIVDDYSRGTWTYLLSTKSNAFSVLQNFLYMVERQFNLKVKRIRSDNAMEL
GKSIVAINFFNSQGILHETSCVATPQQNGVVERKHRHLLEIARALLFQSQVPLAYWGECILTATFLINRLPSRVLHGHTP
YQILHGKTPNYATLKCFGCLCYASTISHGRGKFEPRAKACVFLGYPSNQKGYKILELDSHKIVISRDVSFFEAIFPFTVP
SPNSTSIFPSPSPDTQYSTVTDSSFDVSVPNIPSPESSDSPDSSSSPLNCPSPQTSLVTDSNLPTGSLPLRRSERSTKGT
LPVHLQDYFCNNIFLTPVTESCFAAPITSTGLSPTGISPSNQLLLESVFHITEPNSYYQVSLHPGWSKAMQEKIVALRSN
HTWDMVHLPSNRRALPCKWVYKVKHRADGSIERLKARLVIRGDIQREGIDLNETFSPVVKMTTIRCLLSIAAKKQWPISQ
FDVNNAFLQSDLQEEVYMKFPPGLAPSNSTMVCRLRKSLYGLKQASRQWYAKLAGALHFKGYTASLNDYSLFFKHTGDLV
SIVAVYVDDILITGNDLIEIQSLKAFLHVEFKIKDLGLLHYFLGMEILREDSGIIINQRKYTLDLLEEFDISHLHHVSSP
MDPSCKLTADSGKSMSDPTIYRHLIGKLNYLTHTRPDLCYAVLSLSQFMQQPSENHFAAALRVLCYLRGSPNQGIFLSAS
PSFIISAFCDADWASCPDSRRSISGFFICLGGSPISWKSKKQASISLSSAEAKYRSMRRLVAELTWLTRLLADLSVPPLL
PIPIRSDSQAAIHIAKNPVFHERTKHVELDCHFVRQQYLFGLISLHFVPSKDQ
>Copia-56_SB#LTR/Copia 48-4434 via tfasty with SC-8, 1 frameshift. [Sorghum bicolor]
MAPGSETADSSSAAGAAQPRQEVVVRTVREVSGTSWPMLTRTNYGEWAVTMKVKLRARRLWNVIDKGTDKEEDDMSAMEA
ILAAVPTEYREPLGAKKTAKEAWEAIAAMRVGSDRAKKATAQLLKQEYANLKFKDGESVEEFSLRLSSLISKLGSYGVTI
NEEEAVSKYLHSVPPKYIQIALSIETMLDLSTLTIEDVTGRLRAVDERMEQATATTDSGKLLLTEEEWAARMKEKKSGEA
SSSRGGDGKRRGKASSEKKKKKKIDPNACRRCGKTGHWAKECPNRKQEKKAEAHLAQADDDDDDDEATLMMATFCALHDV
EAKEKGEVMAVQEHGKALKAVNLDEPRAQVHLGRVGSEQEQQWYLDSGASNHMTGSKEAFSELDGNVTGTVKFGDGSRVA
IQGRGTIIFRCQNGEHRALTDVYYIPQLRSNIISIGQLDARQRVLIKDGVLKIRDREQRLLAKVKRSRNRLYLLNLKVEQ
PICLAAQRMEEPWLWHARYGHLSFDALGKLEKMVRGLPHIEHAGELCDSCLAGKQRRLPFPKMAKYRAAEALELVHGDLC
GPITPATHGGRKYFILLVDDCSRFMWLQLLTSKSEAAEAIKKFKARVEAESSKKLRVLRTDLGGEFTSMEFAAYCAEEGV
VRHHTAPYTPQQNGVVERRNQTVVGMARSMMKAKKMPAEFWGEAVTTAGFILNRAPTKALKGKTPFEAWHGRKPNVSFLR
TFGCIGHVKNTKPHLGKLEDRSTPMVLLGYEEGSKAYRLYDPKRGKVVISRDVVFDEMAAWDWVQQGAGEAGGVSSTFTI
EHLVMQGGGGAGAQAVAATVGEQAAADAGEQAAAATEQAAAAEQTAAGEQSPPAAAHLPPPQSPATAGQGTPPLEFASPP
TNIDEYVDAFHDGEEVRFRRVDNIVGEGRAPGLASRLLDDPELLLVSAEEPPTFTVAERDANWRRAMLEEMRAIEDNGTW
ELVDPPAGCRPIGLKWVYKVKRDERGAIVKYKARLVARGFVQREGIDFEEVFAPVARMESVRLLLAMAAAKDWRVHHLDV
KSAFLNGELAETVFVKQAPGFAVKGAEHKVLKLRKALYGLRQAPRAWNAKLDATLGELGFARCATEHALYTRRRGKEELV
VGVYVDDLIVTGARAEDIDRFKHEMAARFKMSDLGMLSYYLGIEVRQGKEHISLGQHAYAEKLLERGGMADCKPCATPME
ERLKLSKHSTAAKVDATRYRSIVGGLRYLTHTRPDIAFAVGYVSRFMEDPREDHWMAVKRLLRYVKGSLDQAIIFPKRGG
KGGLRLTIFSETPPKTKGEPELTVFSDADMAGDIDGRRSTSGVLVFLGAAPIAWQSLKQKIVALSTCEAEYVAAATAACQ
AVWLRRLLGELTGKEAHPPALMVDNQPAIALAKNPVLHDRSKHIDTRFHFIRDCVDGGQIVLEFVETGRQLADILTKPLG
RLRFMELRTKIGMVEIKQEQQD
>Copia-54_PTr#LTR/Copia 323-4477  [Populus trichocarpa]
MATERDDSLQSVSVRLDGKNYSYWSYVMRNFLKGKKMWGYVSGTYVIPKNTEEGDAVLIDTWEANNAKIITWINNSVEHS
IGTQLAKYETAKEVWDHLQRLFTQSNFAKQYQLENDIRALHQKNMSIQEFYSAMTDLWDQLALTESAELKACGAYIERRE
QQRLVQFLTALRSDFEGLRGSILHRSPLPSVDSVVSELLAEEIRLQSYSEKGILSASNPSVLAVPSKPFSNHQNKPYTRV
GFDECSFCKQKGHWKAQCPKLRQQNQAWKSGSQSQSNAHRPPQGYKPPHHNTAAVASPGSITDPNTLAEQFQKFLSLQPQ
AMSASSIGQLPHSSSGMSHSEWVLDSGASHHMSPDSSSFTSVSPSSSIPVMTADGTPMPLAGVGSVVTPHLSLPNVYLIP
KLKLNLASVGQICDSGDYLVMFSGSFCCVQDLQSQKLIGTGRRENGLYILDELKVPVAAAAAATTTVDLSSFRLSLSSSS
FYLWHSRLGHVSSSRLRFLASTGALGNLKTCDISDCSGCKLAKFSALPFNRSISVSSSPFDLIHSDVWGPSPVATKGGSR
YYVSFIDDHTRYCWVYLMKHRSEFFEIYAAFRALIKTQHSAVIKCFRCDLGGEYTSNKFCQLLALDGTIHQTSCTDTPEQ
NGVAERKHRHIVETARSLLLSAFVPSEFWGEAVLTAVSLINTIPSSHSSGLSPFEKLYGYVPDYSSFRVFGCTCFVLRPH
VERSKLSSRSAICVFLGYGEGKKGYRCFDPITQKLYVSRHVVFLEHIPFFSIPSTTHSLTKSDLIHIDPFSEDSGNDTSP
HVRSICTHNSAGTGTLLSGTPEAPFSSTAPQASSEIVDPPPRQSIRIRKSTKLPDFAYSCYSSSFTSFLASIHCLFEPSS
YKEAILDPLWQQAMDEELSALHKTDTWDLVPLPPGKSVVGCRWVYKIKTNSDGSIERYKARLVAKGYSQQYGMDYEETFA
PVAKMTTIRTLIAVASIRQWHISQLDVKNAFLNGDLQEEVYMAPPPGISHDSGYVCKLKKALYGLKQAPRAWFEKFSIVI
SSLGFVSSSHDSALFIKCTDAGRIILSLYVDDMIITGDDIDGISVLKTELARRFEMKDLGYLRYFLGIEVAYSPRGYLLS
QSKYVADILERARLTDNKTVDTPIEVNARYSSSDGLPLIDPTLYRTIVGSLVYLTITRPDIAYVVHVVSQFVASPTTVHW
AAVLRILRYLRGTVFQSLLLSSTSSLELRAYSDADHGSDPTDRKSVTGFCIFLGDSLISWKSKKQSIVSQSSTEAEYRAM
ASTTKEIVWLRWLLADMGVSFSHPTPMYCDNQSSIQIAHNSVFHERTKHIEIDCHLTRHHLKHGTIALPFVPSSLQIADF
FTKAHSISRFRFLVGKLSMLVAAAS
>Copia-49_MLP#LTR/Copia 400-4947 via tfasty with Copia-24_SI, 61.7% SW:1455, 1 stopcodon. [Melampsora larici-populina]
MSQGQDIDQFFAQSSSQVPPSEQSNSEDEADQTTRFISQLLTSPSNTNKAPINPNLQPTSYKSDPTPLSKSHFESIMSGP
SSPNTISPQQQAMLLNQSLGRSSKILTDENYVLWASFIRGGLKSLFLSDYLNSDDIKLENSQFTDEVSRACSTNWMLNNM
DDINRSRFEPKITVYGDSGPDTQDLPSKLWKAVTNHHSSRSEELRLLYERALNLITQASNVPILTHIQNFQNAVTKYKTA
GGQMSDEDLGRKLLISLNSSHFQDAREIAISGIKEYDKVVSELKKRLDAVLMLTKSSVHSKVPVVIHAAEASSVSNSFSR
NRQTLKCTKKKCVGVNHSPDQCFKRPGNEHLQREWIEQRVKLGQWNGDPPKDFAASSASAATLNEPTIEQLENVFNSLNA
SASHISAVSLSKLSLSSNPHDLGVLIDTAASHHMFKEKHIFVNYVDMANSNEYLNMAGGDATLKIHGRGDVQFFGPDGQR
FDLHDCLHIPNLKRSLIGGTILLRDGFDFIHKKVEGRFEIIKDNQRAFQGVLNDDVNLMRSYRPVSPESSPEANVVNQST
DPNILNLHRRLGHLNLRYMKSMVSQDCVKGLNVNVSSFPTAIACDSCDLSKSHRLPHNKLHVHSSNLLENIHLDLSGIIR
TSAICGSVYFMLFTDDHSRYRHVVGLSEKSADKVFIKIRQYFSLVERQCNAKIKSLTLDNGYEFINDTLVPYCEEIGIYL
RTTATYTPEENGVAERSNRTVTEPAxAMMIEANLPIRFWLYAIKASVYLKNRTITSSLPDGKTPFELWHGRQPDITHVRP
IGCLCFVVIRKAIRHGKFNQVSRQAILLGHTEHNLNYEVFIFETNSIVISHDVTFREDVFPFKKLKSFDLSHLSFEGDED
IMLSDPSALEPLHEEEGDDALVPGGEGLHQDETELDIQPLIDQVEPIEPNESHPNICRSERERRPIERYTPSASYAYWDD
EGAFTDLHDAFPCAFAVGSIVRLIQEPHNFISAMTGSDKDEWKMACDKEMKNMEDRKVWRLVPRPSDQSVVGCKWHFKVK
LNPDGSINKHKARIVAKGYTQTYGVDYTDTFAPTGKPASFRTVVAFAAYHGLPVHSMDAIAAFLNSGLKHKIFMEQPQGY
EIEGDDLVCKLLQALYGLKQSAREWNDDFKLKCLKAGFTQSPADECVYIRRRAHDMCLFYLHVDDLAITGTNIDDFKKEI
GGFWPMEDMGISTCVVGIQIARAGLNHYVLGQEAMIKLLLKRFGMTEAKVASTPFPGGTKLTKSTPDEARSFNLLNLPYR
SGVGSLMYLSQCTRPDITYAVGCLSQHLENPSLRHWEAFKHILRYLKGTMNHCIHYKKPILPSKSSNLPLISSNNGFSLP
EHFADSDWAGDRSTRRSTTGYVFMLCGGAISWRSRLQQTVAKSSTEAEYRAANEAGDEMIWLARLLASIDLPQATPYLLN
SDSLSTIDVSENAVMHGRTKAIEIHHHWLREKVKEGVIKLVYCPSEDMLADILTKPLHPGPFNHFRERIGVRQIVE
>Copia-55_BRa#LTR/Copia 14-4134 via tfasty with ATCopia46, 82.8% SW:4440, 1 frameshift and 1 stopcodon. [Brassica rapa]
MDGDPYTSPLTITQCVTLKLNDSNYLSWKFQFEQFLNSQSLLGHVNGSTPRPPPILTTLNGEQTTETANPEYAQWVRTDQ
RIMAWLVGSLSETVISSVYGLRSSQELWYYLAQKYNRVSPTRKLDLQSxIQTTKKGSRTLSVYLAEIKSLCDQLDSLGVP
LSEQEKIYGVLRGLGREYESISTVIESSMDAFPGPNYDDVVFKLISFHDKLATYEAPTDVSINQAFYTNRGGYSSRGRGH
GGSRGRGNYSTQGRGFHQQISQSSGRGSSSALDNRPTCQICNKFGHPAYKCYKRFDHSYQAEEYHTALAAMRAQDTRYDS
GQEWYADSGATAHITNNVSQLQSSQAYTGDDTVLVGNGECVPITHVGTAMLPSLQGNLPLKDVLICPAMTKSLLFVSKLT
ADYPCSIEFDADSVIVKDKQTRQILTKGFRQKDLYVLENLKFTAFYSHRQQAASGNVWHMRLGHPYHEVLQRLASNKAII
INNLSRQLCEACQLGKSSRLPFSSSEFVASRPLERVHCDLWGPSPVVSTQGFRFYADFVDHFSRYTWMYPLRMKSDFFTA
FLSFQNLVERQLDSKIQVFQSDGGGEFISKQLLNHFASCGIKQHLSCPHTPQQNGLAERKHRYVTELGLSLMFQSKVPHQ
LWVEAFLTATYLGNLMPSSVLPEKKSPYEMLVGKPPVYSSLRVFGTSCYPFLRPYGKNKFDPKSLHCVFLGYSEKHKGYR
CLHPPSARVYISRHVLFEENKFPYEKEFQSFLSSLDTPLLSSWRSEHVTAKEQVVDQPVAEEFIPPPRKTQAPPPVSPAS
AASIFSDDDFPPLPSPLVSPVQQQVVQPAPVHQMITRAKDGIRKPHPKYALVTVKSLYPEPKTLAAALKDPNWTNAMQHE
KNNMDITHTWDLVPPDPTIQPISSGWVHKSKLNADGTLNKRKSRLVARGNEQSEGIDFVETYSPVVRTATIRSVLHIAIV
KGWKIKQLVVENAFLHGDLKETVYMKQPPGLEDKEKPHHLCKLRKAIYGLRQSPRAWLDKFSTFLLEFGFKCTHGDPSLF
VYLHGDDVIYLLLYVDDMLLTGNNEKLIEKLMVTLNTTFRMKDMGSVHYFLGIQVQAHTDGLFLCQERYTLDLLEAAGMS
DCAPMPTPLPIQLDKVPGNDKLFSEPTYFQSLAGKLQYLTLTRPDIQFAVNYVCQKMHSPTVADFSNLKRILRYLKGTCR
LGLNINAQTGFLLYGFSDSDWAGCKDTRRFTGGLCTFLGSNIISWSAKRHPTVSRSSTEAEYRTLSLTATEIKWIASLLG
EMGISLPDTPELFCDNLSAVYLTANPALHNRSKHFDTDFHYVRERVALGALVVSQVPAVLQLADIFTKSLPQQPFFALRD
KLGISKPPAPSLRG
>Copia-56_BRa#LTR/Copia 193-4797  [Brassica rapa]
MSYANAVTSTPSSATAPNRSPLTPSLQDPNSNPLFIHNADHAGITLVSDKLIGIGNFNTWRRSMMMALGARNKVVFVDGS
FPELEKSHPDYSSWFRCNSIVCTWIVNAVDKSIAKSIMFLDTARQMWLDIHDQFRQSNGPRTAEIKQLIFSEVQGSQSIN
EYYTKLKQLWEELKNHESPYKCCCARESCESFKTLMDRDEQDRVLKFLMGLNDTFTATRGQILMMEPKPSLIKVLNFVSQ
EERQRSMKNSSVTSSVAFQASQLNTQPDQLVTAYSGGYNKSKGRPICSHCGIAGHTVNRCYKLHGFPPGYKTQGSNLKPP
PQQSQQPQQSPQNKMNESWPPKTGNVAGLITLDPHIYTLNQRGVNLENLTPDQFQQLLNVLNSTPKIQNIISQVSGSQLN
LADGTVSTSKPQPHLSTQIHAPSGKPINSFHLFSAGTNNNLPFHKTAWVVDTGASCHVCSDYHLFSDLIPITDTFVILPD
GTRISVTLSGTIKLSDSLTISSVLFVPHFKFNLLSISALTQNSPITVLFSSTSCYILPYNPFLSQEHILDSMIGKGNLRD
NLYILESTLSSSSAPSHNHSAFLISSEVWQQRLGHPSFDKIQTLSKDIHLSIPKDTHDTFCKLCHLAKQKRMSFRSSNNL
SSQPFDLIHLDVWGPFHVSTSEGYRYFLTIVDDCTRATWVYLLTNKSSVTTIFPEFIQFIETQYQKKIKAIRSDNAPELS
FTSLLKTKGIIHYFSCVYTPQQNSVVERKHQHILNVARSLLFQSNIPIEHWGDCILTSIYLINRTPSPLLQNKSPFELLN
SKPPSYDHLRVFGCLCYASTLLKDIHKFSPRASPCVFLGYPQGYKGYKVLDLETNTILISRNVIFHGSIFSFSNSPLVSN
IFPQDILPLPVPESLFPASFDIDPTPIFPDSSSSHTVEPDHDNSIPDISSSHHLSDPNVPSCSNTESVPSGDNDPISRPK
RQTKVPSYLDEYHCYLLNKVPAFPSHSLNTTSYPISSFLTYDNLQPSYKNFVLSITTSTPPKTFLEAIKSVEFTAAMKSE
MTSLEATGTWSVCELPPGKHPVGCKWVYTIKFNPDGTIERFKARLVAKGYTQIEGLDYIDTFSPVAKMGTVRLLLRLAAS
KNWSITQMDISNVFLNGDLDEEIYMIMPPGYSQLSGKTYPKNSVCKLHKSLYGLKQASRQWNQKLSSVILGAGFQQAPSD
HSLFVRNTSEVFLAILVYVDDILFVGSDESAVDAFKDILKAAFKLRDLGPAKYFLGFEIARSATGIAINQRKYTLELLED
AGLLGCKPLYVPMEPNLKMSGTDGVLLEDPSVYRRIVGRLLYLTHTRPDITYAVHKLSQYMSAPHSVHLQAANRILRYLK
NDPGQGLFFSASAALNLTAFSDADWAACPDSRRSVTGYCVFLGDALISWCCRKQPTVSRSSSEAEYRAMADTTCELIWLT
SLLHDLHCPPSSPATLFCDNQSALHIASNPVFHECTKHIENDCHVVRERLQSGFLKTLHVRSDNQLADIFTKAVQPGLFK
NLLSKMGLHSLYLPS
>Copia-55_SB#LTR/Copia 35-4478 via tfasty with Copia-26_SB, 1 frameshift. [Sorghum bicolor]
MATSSEAAASFFSFLPLVTKKLTRSNYNMWLAQVTATLQGAQLWSFTKPTTKPPPEFLEVDAAAAAAAGNKAEPAVNPEY
EKWLAKDSQVCSYLFTSLSEDTFSQVADATTAAELWAAIQTLQASQSRARIMSTRMALATATKGSSTVAEFFTKMKGLAD
EMALAGKKLDDDEVVSYILMGVGEEFESVTSAVANRTDPISLPELQAQLVSHEQRREIRDGGSHSSVNSAEKGGRRGGRP
SYSRSGRGGGGRGGFGRGRNSGRNGGRGGGHNNNNNFTNNTFLEGVICQICGREGHGADRCYKYVGYPPKKSASATTTSY
GVDTNWYMDTGATDHITSELDQLTIRDRYNGNDHVHTASGSGMKINHIGHSTLSFPNSNLRLRNILHVLEANKNLVSVNR
ITRDNNVFLEFHPDHFLVKEQGTKKTLLQGRCERGLYPLQSSNKEVLATIKPSTSLWHHRLGHASTPVVQRVLNHHKLPF
VQDSSQHSICDACQQGKSHQLPRSTSVSKHPFDLVFSDVWGPAPKSVGQNKYYLSFIDDYSKHTWIYLLRQKSEVFRCFL
DFQQLVERQFDCKIRAMQTDWGGEYQTLSSFFKRVGISHHISCPHAHQQNGAAERKHRHIVEVGLTLLAHASMPLKFWDE
AFITAVFLINRLPTKVIDHDTPHERLHGQAPDYMFLRTFGCACWPNLRPFNPRKLEFRSKKCVFLGYSNHHKGFKCLEPT
TGRIYISRDVVFDEHLFPFSKLHPNAGAQLRAELTLLPDILLNPTSTFGKTQVLDQCVSSSLPTNSSSNSTGELMTAGET
STCTNGIGFLSGSLTTSGAAASLSGPPPTNGDAALSGPTADPVASDPSSSQQHAAAQPDLTMESGTPISGLGGASSQHHA
VAQQNLASEFGMPILGLGAASSQQHAAAQPNLAVESGASIPELGAAPTCTSAPTPSIPVPPRPATRSQHGIVQPKRRTDD
AVRWCNLATTEEPSSVDDAMQDKRWSMAMDEEHRALLNNHTWHLVPPPRGKNVIGCKWVYKIKKRADGQVERYKARLVAK
GYRQRYGLDYEDTFSPVVKAATIRIVLAVALSRGWSLRQLDVKNAFLHGVLQEEVYMHQPPGYVDSKYPGYVCKLDKAIY
GLKQAPRAWHARLCAKLESLGFVPSKADASLFYFNKGRYTLFVLVYVDDIIVASSSPDATKALLVDLQHDFALKDLGDLH
YFLGIEVKRGNTSMLLTQERYATEVLKRSGMDKCHPVDTPLCSSEKLSIEDGNKLGSEDATKYRSVVGALQYLTLTRPDI
SFAVNKVCQFLHSPTTIHWSAVKRILRYIKGTTKLGIKFSKSESMLVSAFSDADWAGCVDDRRSTGGFAVFLGNNLISWT
AKKQPTVSRSSTEAEYKALTNATAEMIWVQKLLNELGVRHPPRARLWCDNLGATYLSANLIFHARTKHIEIDFHFVRERV
AQKLLEVRFISTGDLLADGFTKALPVIKLKKFRDNLNLQSG
>SMRV-H_env#LTR/ERV1 gi|74719|pir||VCLJHD env polyprotein precursor - SMRV-H [Squirrel monkey retrovirus]
MLCILILLLHPRLCPVTKGGLGKPSGDIYTALFGAPCDCKGGTQTNNYATPTYTQVTDCGDKNAYLTYDTNWNGVSSPKW
LCVRKPPSIPVINGRPGPCPSECTNNIKSQMHSSCYSSFSQCTQGNNTYFTAILQRTKSTSETNPVTSGLQPHGVLQAGC
DGTVGKSVCWNQQAPIHVSDGGGPQDAVRELYVQKQIELVIQSQFPKLSYHPLARSKPRGPDIDAQMLDILSATHQALNI
SNPSLAQNCWLCLNQGTSMPLAFPVNISSFNASQNNCTPSLPFRVQPMPSQVYPCFFKGAQNNSFDIPVGVANFVNCSSS
SNHSEALCPGPGQAFVCGNNLAFTALPANWTGSCVLAALLPDIDIISGDDPVPIPTFDYIAGRQKRAVTLIPLLVGLGVS
TAVATGTAGLGVAVQSYTKLSHQLINDVQALSSTINDLQDQLDSLAEVVLQNRRGLDLLTAEQGGICLALQERCCFYANK
SGIVRDKIKNLQEDLEKRRKALADNLFLTGLNGLLPYLLPFLGPLFAIILFFSFAPWILRRVTALIRDQLNSLLGKPIQI
HYHQLATRDLEYGRL
>Gypsy19_CR_gag#LTR/Gypsy 39-2168 [Chlamydomonas reinhardtii]
MDPAAEAAAQAAAQAAQAAAAQQALAQQAAAAAAAAAAAAAAAPRAGSGGSAAPSSVHLPPRPASAPGMGSNNDDEMLSA
GEGDEVSGMFRNILSLPTSTALALMSRVHNALQSTLRRSPTRAATQSLAEPTGTSINPLQPTSNGSDGSHESHGPRTASL
ARSAPEQALTMGPSGIYSRVRASLAAGPSTGTGAPVSSDLPPTASDPSAANAPPRAARARLRPPPPPNNLSSAPQTHSHA
PPPTAAPAPQYGYDHQPSAPMAPASYGPGPTYGHAGPAFGTGGPAFHQPPSVMSQLDTLRHRQNGHGHLLEDVQRTGHGT
QQAVESLRNGLQNMHSLLVNTNTDVANLRNSQAPLNAAVHEIQLVSPGSAPSTAVPYARHLPRPSKLAGDPDLDKSIGDR
EVWFASVTSYMGRTGMNLLNDFEFFLEGPAATWFKNLRAYYHSTGKALDATALQAEFKRAYGDLENQSEPQRVRERISAG
EARQTPGMPVSQYVQKFTTLLLEAPDMAEADRIQYFFDNMLPSLARDAIVDGDNKRHKTLASAIDAAYAAELGYRMRKRA
SASAAVASIPKGTDSDDCNNASSSDDEGSDGDGDATVAYVKRLPHRGKPHTHSKHAPRTHAFKHTKRPDRYVPLRNARKT
QALGRLENKFDALRDRMGDGAGGSAKRQRSEEDKSIAGLKTLGFCTKCAREDVSRKWNTCRDHNPKFAA
>Gypsy18_CR_pol#LTR/Gypsy 3413-6073 (fragment) [Chlamydomonas reinhardtii]
VLQNRRSRRSPLVLRLTNRCETVSAALPALQEQQPKQHLRSVCRTEVASFEAVLLSAWVQASDKQLGKSVLVYLDDVMIF
SKTPEEHLRHLEEVFQVLQTHNLRAKLAKCEFNKPELKFLGHIVGRDGLKVDPDKVRSVAEWAVPQNRKQVRSFLGLANY
FRKFIQGYSSLVAPLTALTSEKSPWLWCDACQRAFEGVKRALITAPVLALPNTSEPFEVKTDASIYGTGAVLLQNGNAIA
YLSHRFTPAEKNYTTTDQEALGVIHALQEWRCYLEGAPDVTVVTDHQPLTYLDSMKANGLLSRRQARWIEFLQDKNVQWS
YQPGRINVADPLSRIYEDVVPEVPRAQLAMLVLQFRAQHPDLVLDPHVQAITRGQRTRDAPPPAGTTIPADIRKQLADGY
ASDPKFRTRNWVAKLKKVGDLYYQGGQVMVPAVDTLRRSLLAEYHDGGSSGHPGHERLYEAIRRDYLWEGLGADCKRYAA
ACPDCQRNKASTAKPRGLLQPLPIAKRPWGSVTLDLITQLPETTSGHTAIMVFVDRLTKMVHFAPTTNEIDAEEAAWLYL
QNIFRHHGLADEVISDRGPQFAGKFWPEVHKLLRTKVRLSTAFHPQTDGQTERMNRLLEETLRHYVGPRQDDWDECLPMI
EFAINNARSKSTGVSPFELYTPYQPRTPGNLGLPPKHTFSVPMASSLVKHMGERLKRAIACLTSAQARQKQAADARRQDS
TFAVGSLVLLSTKNLALKAPTGGTKKLMPKFIGPFTVLEKVGPVAYKLSLPEGYRIHPVFHVSLLKPYTSDGRYQPPQAP
KLFDDDGNAYWEVEDIIGHRDRKLGGSRSKSVREYLVKWLGFGAEHNSWEPSTVLCEDELVEQCINDYLERVNLRNAKRQ
RRATGT
>Gypsy22_AG#LTR/Gypsy 68-4360 [Anopheles genus]
MDPASKKTEIPAASVTTRAAAKSASTGTPTADSSSNLPTGVLATDNSATAKPISSNTSTRGPVTAHSAAVKPKASSSTTS
STSVPGSSVGEGTALSVSVRGITTAVTNMSTMFSFEPFDPTNCKIQRWLERLQIAFKIHRVSEEDKRDYLLHYMGGATYD
VLCNKLKNAEPQTKTFQEIVSILQEHFNPNPLEILENFKFANRKQAENETLSTYLMELEKLAQTCNFGDYLDKALRNQFV
FGLQNRAIQSRLLEVRDLTLAKAKDIAFSMEMSNRGADEIHGAGAAYPVQHISTTSKKKSKPTTVQRKTACYRCGNEEHF
ADKCRHRNAICNYCKKMGHLDKVCRTKLQRAGVHTLEYEPDLPACDDDVVDVLNLRAVQNLAGKFLLEMEISDRKLIFEV
DTGSPVSLISNRDRLNCFPNTLMKKSNVKLKSYCNGVINVLGEIEVRAKIKNLEIPLPLLVTKSDRNPLLGRNWMRTIKL
DLNKFMHTSQEVSYCEKENFTPCSILEALLKKYSEVFEAGIGKIEGLQASLTLRKETKPIFIKARPVAFAVRDAVTNEIN
KLVEENVLEKVDHSEWATPIVPVKKSGGNVRLCGDYKITVNPNLLVDEHPLPTVEELFTNIAGGEKFSKLDLSQAYLQLE
VSPDCRDILTLATHKGLYRPTRLMYGVASAPAIFQRLIEQILQDIPGVTAFIDDIRITGPNDEIHLKRLEEVLKRLRKYN
LKVNKAKCEFFADQIEYCGYLVDKHGIHKLHTKIKAIQDMPAPKSVDELRSFLGLVNYYGRFFPNLSTVNYPLNNLLKDG
IPYVWDEHCQKAFAQVKREMQTERVLVHYDPNLPLILATDASPYGVGAVLSHKFADGTERPLQYASQTLNKTQQRYSQID
KEAYAIIFGVHKFHQYLYGRKFTLVTDNKPLSQIFSESKGLPTMSAMRMQHYAAFLQGFDYNIRHRKSVNHCNADALSRL
PLPSEDSDRRIEDSDLVEINVIETLPLTVPELAKATAVDPNVEELLRALRTGKIILPKHCFGIDQNEFDLQSDCIMRGSR
VYIPPLLREKVLQELHSSHFGISRIKSLARSYCWWPNIDKEIENIVNNCQPCQETRANPPKVPIHCWEKAEGPFQRVHVD
YAGPFMGSYFFILVDAFSKWPEVRVVNNMTTETTINACREIFSTFGIPMVLVSDNGTQFSSTEFTRFLKLNGVIHKFSAP
YHPATNGQAERFIQTLKSKLKAVKCNRTEIPEVLSNILLSYRKIIHPSTGFSPSLLVFGRQIRSRIDIMIPTSNSNNREI
IKTKDFEIGQRVAAREYIKNNKWEFGKVTARLGKLHYEIELDDGRTWRRHIDQMRAVGISMQKPINRNTSWQGRETTSHN
LESETNTIPKNSSTPELMTDCGSRSIVQAQPSNPPPMSFPSEAPCSAEIPPEAKLRRSARSIKTPQRLLL
>Gypsy43_AG_gag#LTR/Gypsy 425-1633 [Anopheles genus]
MWRNSTIEAFCSDTDSISNDSGSLSYVPTNVDIPLERLSLTDNMEQIQAQLEQLTHLVQTLAVSHEQQSQKILTLESNTQ
QASSSVASSVAQGANLSVNLDAFYKIPDPIKAVPVYDGNKKQLFAWLKTAENALNIFKGNVHYAVYQMYEDAISNKIQGR
AKDALCLEGNPTDFQDIKGILTKTFSDRYDLSTHMCQLWHNKMNNSTNLKGYYMQTKELIQKIKQIARQNEKYNESWSAI
NHFIDETSLAAFIAGLHEPYFGYVQAARPEDLEGAYAFLCKLKSNESTAQNSNVRKVTETKHYTSHNEGLQKRFDCNANR
PRMTNQASTSSFMNRNTRNVHSSNRDSPVPMETESSRTRLTLNQKNLNTTETFNSNCPRNFENEEDDILVNFWEAVETTL
PI
>Gypsy40_AG_gag#LTR/Gypsy 222-1262 [Anopheles genus]
MPRFQPFPKVKALSFVKKMEPADLHTFMANFSAMEQRLNALQLKNGELFRQLEQQTALASPGPSGGYQNDLFKVPDPLKS
IPLFDGNKMHLASWIATAKKTLSMYQPIVSTAVYAMYEQIVINKVEGKARDSLCVNGNPTSFDEVIEVLNATFGDKKDMA
TYQTMLWSMKMDSSIHFYYKRTKEIAHDMKCLARKKDLYCNHWQAVNDFIDQECLAAFIKGLNKEYFGYVQAAKPEDLES
AYSFLCKFQNLEHTNKILAPRAETKISYQKQFDPSSKNRNTNAFTNTIRKPNSSEKLNSSRQKHTPMEVDTTRTGVKLFT
HTSEDTEQHYDNGVNFQEVFAPLPQR
>Gypsy18-PTR#LTR/Gypsy 474-5655 via tfasty with MEGY_MT, 4 frameshifts and 2 stopcodons. [Populus trichocarpa]
MAVARQQTLNELAAPNVENQPLCINIDNNVNFELKSGFIHLLPTSNGLAGEDPHTHLKEFHMVCVGMKPNGVDEEQVKLK
AFPFSLKGAAKAWLFSILPGSIGTWNGMKKIFLEKYFPASRVANIRKEMCGIRQSHGETLFEYWERFEQLCIQCPHHQIL
DxLLIQYFYEGLMPTDRSIIDAASGGALVDKTPEAARQLISNMAANSKQFGTRGDFANKRVNEVSISNLENKVNDLTSLE
RSLACGNVQQVKVCSICSLQGHASDMCPTMQEDYIEQANAVDGVFNGQPQRKYDPFSHTYNPGWRDHPNLRYGNQPQQGN
QGRQFHPHGFQPQQNYQARQPPPFTNSNVMGSSSSDDLREMMKTLASNTVTLQQNVMSFQQETRSSIHNLEKQMGQVASS
VGKLEAQMNGKLPYQALNPKENVSAIMLRNGKELEEKRSKQIEMEEEEEIETELSAKKEHPSPSQIETMTNTLKVSPHSM
NSSFKTIAPFPVSSSRSKKEDKGKEILEVFKKVELNIPLLDAIKQIPKYAKFLKELCTTKRAFKLKGHEMVSMGEVVFAI
VQKNMPLKQKDPGAFAIPCVIGNASFERALCDLGASISVMPKHVYDSLSLEPLNKTSIVIQLADRSFVYPLGVIEDVLVK
IDSLVIPCDFYILDMEHDSCDSSNNTPILFGRPFLKTANTKIDCGKDTLFMEVGDEKIEFNFHDAMKYPYSNVYSITCYD
QVDKCVQQVFDFDCKDGLSVALSYGYDFTEIEEMERHICVPQNVHESALALQSLQTVPHGNVFVDLLLSHKKLLPSILQA
PELELKPLPDNLKYVFIGDNNTLPIIIATGLTNTQEEKLVKLLCDHKTAIGWTLADIKGISPSMCMHHILLEDNAKPIRE
MQRRLNPPMMEVVKAGILKLLDAGVIYPITDSKWVAPIHVVPKKTGITLVKNKNDELIPTRISSGWRMCVDYRKLNLATR
KDHFPLPFMDQMLERLAGKSFYCFIDGYSGYNQIVINPEDQEKTTFTCPFGTYAYRRMPFGLCNAPATFQRCMMSIFSDY
VERIIDVFMDDFTVYGDSFDKCLENLSLILKRCIETNLVLNYEKCYFMVEQGIVLGHVVSSRGLEVDKAKIDVISSLPYP
SCVREIRSFLGHAGFYRRFIKDFSKITAPLCKLLAKEVDFVFDQACKDAHDELKRRVTSAPIIQPPNWDEPFEIMCDASD
YAVGAVLGQRIGKNLHVIAYAARMLDGAQCNYHTTEKELFAVVFGLEKFRSYLLGIKVIVFTDHAALRYLLKKKESKPRL
IRWILLLQEFDLEIKDKKGAENHVADHLSRLRTEDIQTETIRETFPDEQLYVLHSSTRPWYADLVNYLVTKEFPPGLSTS
QKKRYVADAKYYFWDTPYLWKFCVDQVVRRCVPQDEFHSILTFCHSHSCGGHFGAKRTAHKVLESGFYWPSIFKDAYHFC
KxCEKCQKTGNITHKNQMPLTNILVSEIFNVWGIDFMGPFPSSFGNLYILLAVDYVSKWIEAKATRTNDAKVVLDFVRTH
IFDRFGIPKAIISDRGTHFCNRSMEALLRKYHVTHRTSTAYHPQTNGQAEISNREIKSILEKTMQPNRRDWSLRLGDALW
AYRTAYKSPIGMSPYRMIYGKACHLPVELEHKAFWAIKKCNMDYDAAGIARKLQLQELEEIRNDAYENARIYKEKTKSLH
DRMITRKEFNVGDKVLLYHSRLKLFPGKLRSRWIGPFVVSNVFFLWCS
>Gypsy15_AG_pol#LTR/Gypsy 2089-5760 [Anopheles genus]
FFRPLSSIRKYPILTINTDADNFVKVKIEIAKEIYSTLIIDTGATVSVLKASKLKPGCKINTSKKLTLISSSDHESETLG
TAMTTIHFGDYSIIHEFHIIEDVESIFSDGLLGKDFIKHRCIVDYVNWMIYFSSDNGLISHPIEDNVNGNYILPKRSEVV
RKITIPNLTEDSIILSQEIQPGVFCGNTIVSKRNQYIKFINTTDKDVSFEIKSYTPEIEPLRDYEQLQRKPNTARERIEK
IHNKIRIENIPQIAREELENLITKFSDIFCLEDEPVSTNNFYTQEISLKDNIPFYIPNYKQIHSQSEEMQSQVEKMLKSN
IIEHSVSSYNSPILLLVPKKSVEGKKKWRLVVDFRQLNKKILPDKFPLPRIDTILDQLGRAKYFSTLDLMSGFHQIKLDK
NSRKYTAFSTPTGHYQFTRMPFGLNISPNSFQRMMAIAMAGLTPELAFVYIDDIIVTGCSARHHISNLGEVFDRLRKYNL
KLNAEKCCFFTTEVTYLGHKITDKGIYPDDAKFDTIKNFPIPTNADEARRFVAFCNYYRKFVQNFDKIAKPINHLIKKDV
KFAWTSECQAAFDTLKQSLLSPTILQYPDFKKQFIITTDASDMACGAVLSQITDGNDLPVAFASKSFTPGEKNKPIIEKE
LTAIHWAINYFKPYVYGPKFIVRTDHRPLAYLFGMKNPTSKLTRMRLDLEEFDFEIEYLAGKANVAADALSRIILNSDDL
KASIPKSKTILMVNTRAMVKKNNVKTDTNKDKPIATTGTDHPAMWKTDRPSEVRKVLKICTQRNKNNVEFIIYNHSYGKA
LGKFLLRKDVNGSQALEFALLEMCKIAKQYGRNKLAWSEEDHLFKEYSQQTIKEIANRAITKFEIILFTPTRWITTEKDR
LRIISDYHMTPSGGHIGQYRLYQKIREKYKWKNMKFDIKKYVRNCKACIVNKTTRHTKEDTVVTTTPTKPFNIISIDTVG
PLTKTNKNNRYAITIQCDLTKYIVVIPIHNKEANTIARALVENFILTFGTFIELKSDQGLEYNNEILHKISEILKIKQTF
STAYHPQTIGSLERNHRCLNEYLRSYTNEHHDDWDDWTKFYEFVYNTTEHTDTNYTPYELVFGRKANLPQDIFKTKIEPV
YNIEQYYFEMKYKLQKSNEIARENLIKAKNRRQQILNKDTVPLIIKIGDQVYLENENRKKLDPVYIGPFTVVRDQGPNCV
IQNNTTKKTSTVHKNRLIKYTGE
>Gypsy15-PTR#LTR/Gypsy 26-4363 via tfasty with Gypsy1GM, 2 stopcodons. [Populus trichocarpa]
MDTRGKSNAEFRSEVNEALARHETNFDQVHGTLQTILTELQALRVSRSPRMNPPELNPFAPAESSGHNSGNHQSSLKLNF
SKFSGEDPMGWIYKSEQYFEYNNVPPVQRVPLASFHLEGIALQWHRWMTKFQGPLTWEEFTKALLRRFGPTDFEDPSEAL
SRLRQTSTIAAYQEEFEKLSHQVDGLPETFLIGCFIAGLRDDIRLDVKIKHPTTLSDTIGVARLIEERNQLQKKVTHPFR
IQPTAATTKPSMSNTVGVLGPPPNLRQSMNSTSNARRISTQEARERREKGLCYYCDEKFSPGHRCQRPQLFMICDSNDQE
SVEQSEILPAAEDQEAFPEISFHAITGTAHPQTLRVMGRLRSKEVMVLIDGGSTHNFIDQSIVHKYELPVIPDKKFQVIV
ANGEKIDCTGLCPSLTILIQGQIVTADYFILPVAACPVVLGVQWLVTLGPVETDYKRLTMSFKKDGNLCVFQGLKQSGLQ
ELTEKEFNTMYVSSQFFAIIPVGSTTQPKSHSSEIAQLLSNFSHVFNPPTALPPKRPHDHQIMLQPNVQPVSVRPYRYPY
YQKSEIERMVKELLHAGFIRPSHSPFSSPVLLVRKADGDWRFCIDYRALNDLTIKDKYPIPVIDELLDELHGAKFFSKLD
LRAGYHQIKVQEEDIPKRRSTxRIEFVVMPFGLTNVPATFQGLMNDLFRSHLRKFILVFFDDILVYSKSWEDHLSHLHTI
LTILSTNILLAKESKCRFGVTSVDYLGHVISEQGVSVDPSKIIAVLEWPTPTTVKGVRGFLGLAGYYRKFIRNFGTIAAP
LNQLLSKDGFKWNDMAEKAFNDLKQALTSPPVLALPDFTQPFVIECDACGVGLGAVLSQNNHPIAYYSEALKGSTLILST
YEKEMLAIVKSIKKWRPYLLGKPFIVRTDQQSLKYLLEQRITTPAQTRWLPKIMGYDYIIEYKKGVDNQAADSLSRVAEC
QFLSISTPHIDWWQKLQYEVAHDPFFTPLADSTTSTAAFSYQNGVWFKKGKIYLSPTSSLLQDIITECHSSPTGGHFGYH
KTLSRLKQSFSWPQMRGTVKEFLRSCDVCQRYKTDSMRPAGLLQPLSIPDRIWVDISMDFIEGLPPSSGHTVVMVVVDRL
SKYAHFVPMKHPYTAATVAQAFVSHIVRLHGIPASIVSDRDRVFISSFxRTLFRLQGTKLGMSSSYHPQTDGQTEVINRV
LEQYLRCFAGDQPRKWIDWIPWAQFSYNTLVHSATKMTPFEAVYGVPPPTLLMYVPGTSNVQVVDGYLRNRDAILCELRK
NLSLAQARMKCQADQRRREVNYEVGDFVYLKLQPYRQTSVAFRSSLKLSPRYFGPYQITEKVGPVAYRLTLPLGSLIHNV
FHVSMLKKHVGPVTTISTQLPPVNDEANILPQPETVLDRRVIQKGQYRPKVEVLIKWTGASLDDATWEDERRLAKSYPAF
LADKES
>Gypsy16_AG_gag#LTR/Gypsy 997-2160 [Anopheles genus]
MSKLKDKLFQLRLIQHKLEYLPKNFRVCTVSKYKILARELLTSIQSDLIELGEAISEEYLNKINSETNECFSAIEFRINN
YQMTNDSQTEKMAHFDIKIATSLVQTYDGSKENLDIFIDSVNLLKEITPNDQKVMLVKFIKTRITGKARIGLPRDLDNID
EILENIKVRCEEKTNPEIVINQLKTIQARQTTKICEEVEILTSKLKGLYLEQKIPEEVANKMAVKVGVDTLKEKISNSET
KILLKVGHYPTITAATQKVLENEIENNNSNQVLAFNRNQNFSTNNFKRFPNSKTNNYNRYNSNPNFQNRTKRRYYESPNS
NRTNPNTYTPNRNRDRHFYRNPRQYNQFGRQNTQPNNFSNQQARRIFTTEAEEEEEQNNFLGQARQE
>Gypsy17_AG_pol#LTR/Gypsy 2966-6748 [Anopheles genus]
TGSRVQHPKQATRRPKFFRATRTAKGNPLHANGDPEPTGGPALHKPLRATYTINVQKSNFIRTRLGLADSICNLFVDSGS
DISIIKGNKVRPTQIYKPKDIVDIISVGEGTITTHGSTITDVIVEGKKIQQLFHIVPDNFKIPADGILGRDFFMNHRCII
NYDTWIFSVKHNGEFLEAPIEDTINGKTLIPPRCEVIRKLDKLKELDTDAVVCAEQLQEDVLVGNCIVNKNYPFIKIINT
SNKAKLVNISHIKTIPLNEFEIVKTSNHKDENRLAIIKDLIRKENISEDTDKSFEQLLLSYNDIFHLPNDHLTTNNFYEQ
DIKLEDKRPVYIPNYKQNHSQGPEIKKQIEKMLQDDVIEHSVSHYNSPILLVPKKSSDEKKWRLVVDFRQLNKKLLPDKF
PLPRIDSILDQLGRAKFFSTLDLMSGFHQIPLEESSKKYTAFSSTDGHYQFKRLPFGLNISPNSFQRMMTIAMTGLTPEC
AFVYVDDIVVVGASENHHLKNLEKVFERLRHYNLKLNPEKSCFFKKEVTYLGHKITDKGILPDDSKYDSIKNYPIPQNAD
DARRYVAFCNYYRKFIPNFALKAKPLNSLLKKNTKFEWTQECQEAFEYLKNTLISPQILQYPDFSKQFILTTDASTIACG
AVLAQEHDGIDMPICFASRTFTKGEANKAIIEKELAAIHWAIMHFKHYLYGTKFTVKTDHRPLVYLFGMKNPSSKLTRMR
LDLEEFDFTVEFVKGKQNVVADALSRIKITSDEIKSINVITRSMNKPVTSDNVLGNTSESDQLKMFHALAYDEVKDLPKL
ETSVKRNENTIELIGKILNKRKSKELLSVRDIHLNTDIGLQEPLLVKDFQKRKEKSAIVQFIKNIEKKLVMKSITQLAVS
ETDEIFKEVNPNEFKQIANNHLKNIQILIYTKPQTINDEKTINDILDKVHNTPTGGHIGQYRMYKKIRKEYVWNKMKKSI
KDFLDKCITCKLNKHLIKTVEPFVKTDTPNIPFEVVSIDTVGPFQKTNNNNRYAVTLQCNLTKHVTVIAIPNKEANTVAR
AVIEKFMLIYGTNIKEFRTDMGTEYKNEIFKNISEILRIEHKFSTPYHPQTIGALERNHRCLNEYLRIFTNEHKDDWDDW
INYYSFAYNTTPNLDHGYTPFELVFGRNEKISTNITEKSTPLYNYDDYSKEFKYRLKLAHDRTRKHIEQEKMKLLKEQQN
INQVNFQIGDQIALTNENRTKLDPVYKGPYKVKEINGPNMIIENTDGVTQNIHKNRAIKI
>Gypsy16_CR_pol#LTR/Gypsy 145-2571 (fragment) [Chlamydomonas reinhardtii]
RPRNTGTVLCSHVAVSAPTGGLAAAFVSAAWPTCPLAALATEGLDPESRKTGDSTKDIWDDDATMHLLRNGTHREGTSPL
ERRRAARRAERYRMQGGDLILMGLDGRTRKVPPPPERLAIVKKTHEDTGHFGMRRTQALLLNSYWWPQISNDVETVLKHC
EACSRVNATFGSRNPQLTPLPIGGLFYRWGVDLCGPFQPTQRGHRYVMICIEHFSKYVILVPLTDKEASCTSFAFRQHVL
GLYGACAEVVTDQGSEWKGEFASLLQESLIDHRQTSADHPQANGLAERSVQVCKRSLRKIAHSNTGSEQWDKFLPYIMLG
YNCSVHSSTKVSPYSILHAVDPVTPPAIKERFAEEVNLDDPEAAARSIMQRGTAVKRNMTIAGGNLLTAQHRDKLRYAAL
RTGGMSPVLRRFEVGDYVYYRNTTARTSLEATARPDIYRVIEARPSGVLVLEGKCGTTITAHVSHCAPCHLPIADQVVDP
RLARPAPTHHCEVCKFPDGEEWMLLCDACGTGWHTYCLKPPVKEIPEGTWVCPNCTKKGVTPEEVDAKGPTPAPRSLQPP
MHLRKLVGATVMREGKGRNRRSKRQLGVASYAGRRGRAHYFTVEYEDGVSEMLSLPELRNRITTAKPTKHAAAAASVGEL
GDLTNVEHARGALCASMPGEHMAEKAERLACAARTGRVRAQPMTASEVEQLCEVIPLDLCGSVFVPWKCSDEVVEVLRSN
GCRVRGSMEKEDVRCVEEKSFEKAKSDGVFNGVALLDVSPEMADVALPAASKHSSVCVAAKLPWEYVTQADSARLKWCAR
CSGSRSWW
>Gypsy46_DR#LTR/Gypsy 701-5254 [Danio rerio]
MASVVDTFRESPSEELLLSCTKEQLLQIAESFEIEIAPRYKTLKETLRNVLKGYLVELGVLEMPAETASLVEEVADPSVS
EHAIRLRELALKEKEIELENAKLELRKREIDHQYELKRMELEMSGKSVVSNEFDVGRNRSMVPPFCEKDVEKYFCHFERV
AASLKWPENVWSLLLQCVLTGKAQEAYASLSIEETADYKLVKAAILRAYELVPEAYRQRFRHYAKLSNQSYVEFAREKEM
LFDRWCTSQKAESKEQVRQLILLEEFKNCVPSALSTYLNEQKADTLHKAATLADDFVLTHKITFREKPREKVFAEAPVSP
PRKSLRIRSTVPTDERACFYCKNSSHLIASCPVLRKKGKAKHVGLISVDSSSNFNCTSESDFNPTKDGYAPFLHYGTVSI
SSMSKPVPVRILRDTGASLSIILEGVLPLSEETATGSAVLVRGFEMGVADVPLHKISLQSELVSGDVIVGVRASLPIAGV
TFILGNDLAGGSVWSDINVSPEVVPVPLAGTDDCALKYPDVFAACVLTRSMIKSAETSDSVDLCDTFMVNSDTTDLFSVP
LQEKADLFPVSAEKDAIDCADLSLCPEKLIDAQKSDSTLTSLFELVRPEQENTCAPQMYFLRNGILMRKWVSPKSSEDWN
VVNQIVIPVDYRDMILDCAHNGSAGHLGILKTYNRILRNFYWPGLKRDVARFCKTCHVCQVVGKPNQTIKPAPLYPIPMV
SEPFEHILIDCVGPLPRSKSGFKYLLTIMCATTRFPEAIPLRSVTTRAITKALVKFFTLFGLPKILQSDQGTNFTSRTFS
QVLKRLGIKHNVSTAYHPESQGALERFHQTLKSMLRTYCFELEGDWEEGLPWLLFASREVIQESLGFSPAELVFGYNLRG
PLAVLKERWLSDSKSTTVPEYFSQFRTRLYRVRELAKQNLEKSQEKMKTWFDKKARERSFSPGDKVLVLLPVSGGSLQAR
YSGPYEIKRKLSDRDYVIHTPDRRKSLRVCHVNMIKPYYERKSDTEKVKNVIQSPVQESLSVGVFTSEPVDEKDVEPSRC
IIEGRLKNSEMLENLTSKLPHLSQTEKAEVIGLVRSFPMLFSDIPGLTSVIEHDIDVGFTQPIKQHPYRVNPLKRSLLQK
EVEYMLENHIAESSTSPWSSPCLLVEKSDGTFRFCTDYRRVNAVTKSDCYPLPRIDDCVDRVGSATYVSKLDLLKGYWQV
GLSERAREISAFVTPDAFLNYRVMAFGMKNAPSTFQRLVNTVLAGVPNCEAYLDDVVLYSSTWQEHMSLLRQVFNRLAEA
KLTVNLAKCEFGKATIDYLGKVIGNGEVRPVAAKVTAICDFPSPKDRKQLRRFLGMVGYYRSFCKNFATVVSPLTDLLSP
KIQFEWSDACQCAFENVKSLLISAPVLAAPDYLKPFSLAVDASDVGAGAVLQQRGAEVEHPVCYFSKKFTSTQRKYSTIE
KEALAMVLAIQHFEVYLSNYHPIVVYCDHNPLTFLNTMRNSNQRLMRWSLFLQPYDLDIKHVRGCDNVVADALSRVE
>Gypsy70_DR#LTR/Gypsy 868-4295 [Danio rerio]
RAVSLLWRAGSCCFTLPSKSQCSPVIRRVLASGTFISSSLCSRTLLPVMVSIKNVLHSCSALVDSGAEGNFMDSTWAHLK
GVHIQPLVDPVSVSTLDGRELAVISHITVPVSLVTSGNHREELVFYLFESPATPIVLGHPWLSLHNPHINWAENTIITWK
SSCHANCLVSAPLPSSVSSVSVLQEEDVDLSRVPGVYHDLRMVFSRSRAASLPPHRPYDCAINLLPGTSPPRGRLFSLSA
PERATMEKYLSDSLAAGIIRSSSSPAGAGFFFVKKKDGSLRPCIDYRGLNDITIKNRYPLPLMSTAFEILQGARVFTKLD
LRNAYHLVRIREGDEWKTAFNTPTGHFEYLVLPFGLSNAPAVFQALVNDVLRDMINKFVFVYLDDILIFSPSLQVHIQHV
RRVLQRLLENQLFVKAEKCLFHAQSVPFLGSIISVEGIRMDPEKVRAVSDWPVPGSRKALQQFLGFANFYRRFIRNYSQV
AAPLTALTSTKSHFCWSIAAQAAFRELKSRFTTAPILVLPDPARQFVVEVDASEVGVGAVLSQICPKDNKLHPCAYYSHR
LSPAERNYDIGNRELLAVRLALGEWRHWLEGAAEPFVVWTDHRNLEYIQTAKRLNSRQARWALFFGRFNFTLSYRPGSKN
GKPDALSRCFGTPYGNPHPDTILPRGHVVGAVIWGVEGLVRRALAKVQVPKGCPVGLLYVPVSARAAVLRWGHSSRFACN
PGIRRSLAAVRQRFWWPAMVEDIRRFVGACSVCAQNKSSNSRPVGLLHPLPIPSRPWSHIAMDFVTGLPPSDGNTVILTV
VDRFSKAVHFIPLPKLPSAREMARVVVDHVFRIHGLPEDVVSDRGPQFISHFWREFCRQIGSTASLSSGFHPQTNGQTER
ANQDLGRMLRCLASHNPSSWSQQLVWAEYAHNSLPVSSTGLSPFMCCLGYQPPVFPSQVADAAVPSVQAFIQRCRRTWKR
ARQALLRTRERTKRTADRHRADAPKYVCGQKVWLSTKDLPLRVPARKLAPRFIGPCLITKVISPVAVRLRLPRSLRRVHP
VFHVSCVKPVLRSPHSPLSSTPSPPPPLMVEGSPAFTVRKILNSRRRGRGFQYLVDWEGYGPEERCWVPARDILDHALIE
EFHHRQLPQISGTPGGVPGERG
>Gypsy62_AG#LTR/Gypsy 48-4373 [Anopheles genus]
MAELQQAILLMTELLQKLAQPNNTEQTLESLATNISEFSFDPENGITFEKWYSRYTDLFESDAKNLDDSAKVRLLLRKLD
TPSHVRYVNFILPKLPKDVDFAGTVKILSQMFGTHTSIFNKRYQCLQLVKSEAEDIISYAGKVNRSCEDFDFKNMNIDQF
KCLVFVSGLKGHAYADTRPRLLSRIECETAEAPVNLQTLINEYQRLVNLKEDTSMIERQSSSKQAVHVVQEKGSFHHPHT
SKPEGKLPRTPCWQCGQMHFVRNCPFSEHQCKQCNRIGHKEGYCGCYSKRQTVPGGGEKKTSNQSPSNQPSHQQTNQPAN
RQNNPRKVNARGVYIVNHIANHSSNRKYVPTLINGVATRLQLDTASDITVISKQTWNNLGNPSIIKPTIQAINASGKPLH
LMGEFQCDVSINGKTARGRCFVTTTANLNLLGIDWIDLFKLWSVPLDSVCNQVTTKSIDQQISEFRAKHANVFNDSLGHC
RKLKVKLFLKPNAKPIFCPKRPVPFNTIPLVDAELTRLQSLGILEPVDFSEWAAPIVAVRKPNGRVRICADYSTGLNEAL
EPNHYPLPTPEEIFAQLNGSTVFSIVDLSDAYLQLEVDDDSKKLLTINTHRGLFRFNRLAPGVKSAPGVFQRVVDGMIAD
IPGVRSFIDDVIVFGKDISSHATSLNLLFQRLKEYGFHVKAEKCHFFQSQLGYLGHIVDKQGIRPDPEKVKAIAALPPPT
NVPELRSYLGAVNFYGRFVRNIHELRHPMDQLLKKDVKWQWTSACQQAFDQFKRTLQSNLLLMHYDPKLPIIVAADASST
GIGAVIFHQFPDGSMKAVQHASRTLAPAERNYGQPEKEALALVYAVTKFHKYLLGRHFTLLTDHKPLLSIFGSKKGIPLH
TANRLQRWALTMLNYDFEIQHVSTNEFGCADLLSRLIDQTIQPEEEYVIAALSLEEDLVSILADTTEKVPVSFAALQKAT
TTDATLQSVAQHIRDGWPSCSKNLSAAVQPYFLRRESLSMIDGCVMFGNRVIVPAQFRRRILQQFHRGHPGIVRMKAIAR
SFVYWPGIDNEIEDFVKRCNPCSTAGKTPTKTTLESWPVPTKPWSRIHIDYAGPVDGVYFLIIADPYSKWPEVYMTKTTT
AKATIKLLKQSFATFGVPEVIVSDNGTQFSSHEFLTFCTSEGIRHIRIAPYHPQSNGLAERFVDTLKRSLRKIRSGGETL
EEALVTFLQVYRSTPSSDLGGKSPAELMFNRPLRTVSALLRPTTSEDGHTVRRDRTLQNDAFNRKHGAVKRSFQHGESVY
VKVHQANSWQWKPGTIIEKIGSVNYNIFLEDQQRLIRSHANQLKSRFTETSQHTDQSTPLSIFFDNFGLQFPVEVPSTEI
YVDVDSQDEEAVAVSQSNSFLTEDISEDEHENSDGSMVEPVDNEQTPVPVELSEQATSTMDRPRRTIQLPARFKPYWMFK
P
>Gypsy74_DR_gag#LTR/Gypsy 290-1645 [Danio rerio]
MAGRGWSGDLITPHIGRGRGLMGVGEPAVGRPRVLVYDSETIPVRSSVDEVSKPTSSTPENASAENVTQQLRDLIGELGN
QIGDSIVARLTDQSPALPRSDVSFEKQNSQQMPSPMSLDLSKVNLIVKTDVKEPPVFRGDGSDKCTIMEWIEQMKVYLSK
KDYDKTDRVEEILNHLSGRAKSIVKVKLKSSPAAAFSPDVVYEVLQRYFSESPGSCQPLADFYATQPKKSEHPVDYWVRL
NEAAEQADSHLKRRGSKMENMSSEVAMMFIRNCPSPDLSSVFRCKPISKWSAEEVQEAIDEYERDCKSWKPALPVPKVVV
NQAVFAEKTVGTEAAVGSESVGVSSALCIANTHAKANEVNDTGTLERVLKMLERVLERTALPVSEPNPRVSQWYRASPCE
VCGDRSHSTRSHCMKERRCLACLEIGHQRKACHKVAGQTAPRAPDVNNQGN
>Gypsy86_DR#LTR/Gypsy 37-3930 (nearly the same as old XP_695421_pol) [Danio rerio]
MMNNIRSPEELKLTGNVNENWKVFKQSFELYALAIGLDGNERRKIALLLTVAGRSALDVYNTFVFTEEEKDKYEAVIEKF
EQYCTPRKNETYERYVFRNRLQKESESIEQYVTDLRLKSQTCNFGTLCDSMIRDQIVIGVQDKRVRMQLLKETDLTLDRA
IKICQASECAMAQLKTFSEEKETAEVDTVRSASEKAMLNKKKQQKPNKESRACGKCGNKHARRKCPAFGKDCRKCGGRNH
FAKCCYSKKKVKLLEKRSDSEDEEAPIFLDSIKEGQTTSKDEWIAHMEVNGTDVLLKLDTGAQANILPMKDFQRLIKKPR
ICDKKVNLKTYDNNTIPTKGVCRVSLSYNGQKKNVLFVLVEGNKQAILGLKTCMQLGLIKRVHVINKDMTVKQKKKDANT
KEVMHSDWIKQYKEVFRGIGRLPGEHKIKLKETAEPVIHPARKVPVALKERLKKKLDTLIKEGVIRKIEEPTEWVNSLVI
VEKADGDLRLCIDPKDLNKAIQREHYRLPTKSDITSAMSGACYFSKLDASSGFYQMVLDEESAKLCTFNTPFGRHCFLRL
PFGISSAPEVFHRTVQQLFDGIEGVGVFIDDVVVWGRTKKEHDARLCRVLNQAQKTGLKLNKNKCEFGVREITFLGERLS
EEGVQPDREKIRAIKEMPEPRDKKDLQRALGLVNYLGKFVPNLSANTRSLRNLLEANTEWQWKKEHIEEWVWLKDSLTKE
PVLKFYDQDKPLKVSTDASKLGLGAVLLQQHDIEWYPVAYASRTMTSAERNYAQIEKETLGAVFGCEKFHEYVYGRPVIL
ETDHKPLIAISKKPLGEVPPRIQRLMLRLQKYDLAFEFKPGKHLIVADALSRASLQNSTSSTEEDVQVHVDSIRVQIPVS
TAKWAEIAKETQKDEHLKRVIEIIHLPEKGMLEKPYQHFQDELTVLDGVLLKGTKIVVPNTMRKKMLKLVHEGHLGMEKC
KRRAREVLYWPGMHRDIVTLVQKCEVCQRHRYQQPKEPMKPHDKPKEPWRKIGMDLFQLKDKDYLLLIDYYSNYPEFVRL
SNTTSEQVIVETKVIFARHGIPTTVVSDNGPQFISQSFKDFARNYGFDHITSSPLYPQSNGLAEKGVQIVKRLLKKAAET
GEDPHLAVLNYRASPMENGLSPAELLMNRKLRTRLPSANHHMMQSSVNHAKERQINYYNRTAKPLIPLAQEDVVRVRCDG
QWGPLAKVTKETMPRSYEVLTEHGKLMRRNRRHLLKVPQRALRSNESDFQDVEISKQKEQSELQDKLTETDRKNDVERLT
ERPKRQIQKPKRLIEEM
>Gypsy75_DR_pol#LTR/Gypsy 1564-6234 [Danio rerio]
MHERTFQAKSSATQGLGRFKLDGSRCGGGCVSLSREPLENVDLLQFYETACAQAPSGTKVIAQNVQTLEVFDNLFYAPVT
INNKHTVKGMLDTGSMACTLSDIAEKRMLSENVLSTATALQQDVILVGCGGKVTKPKCMYEVELKVYGESCQVPILVVPG
QRDDLIIGTNVIKFLAHRMKGTSDYWRLVSNLSGEPTTGCEQFLDVLANTCRWKGSELPDKVGTVKLQQCVTLLAKQEHL
VWGKLPKNVPMSPGSTVVVEPTTSRSASRDIMVGRVVTPLWGDRWVPVKVTNFSDKPVTLKRNRKLADVFPCVAVEDFEL
FQGSSQAGVLNDENQHLSHSSDSLRQRLETVGLSDIDIQSCSVSHDTREKLVELLERYNDVFSKHALDCGEVKGFVHRIR
LMDERPFRLPYRRVPPAHYQKLRQVLSQMEEQGIIRKSVSEYASPLVLVWKKDGNLRICTDFRWLNARTIKDAHPLPHQS
DCLAALGGNTLFSTIDLTSGFYNIPMAEEDKKYTAFTTPVGLHEYNRMPQGLCNSPASFMRMMVSIFGDLNFSSLLCYLD
DLLVFAPSEPEALERLEVVFSRLRQYNLKLSPKKCHLMRTSVRFLGHIIDGNGVAVDPAKVDVISKLSKFDLMEDDKCTP
SVRRIKSVLGMILYYQHFIPGCSSLAKPLFALTAGQRRKRSIKGDPKAGTYRKLKPTDWTVECDHSLNSLKESLLQSVVL
AHPDFTRPLILAIDASLDGLGAVLSQVPAGEERARPIAFTSKTLSKSQRNYPVHKLEFLALKWSVCEKFSHWLKGQTFTV
WTDNNPLTYVMSKAKLDACEQRWVSKLAAYTFELKHIPGTKNIVADALSRDPFVKTVSSRLMKESYRDLLVEAKEVNGDE
VRDAFRQGAQNLQICLQSCLTLPSDSDTIKACLNLHDQWEETSQARAVQLIQSYQDFVPTCTDVLPSITADEMCDMQHAD
LAVSGVVPFLNLKRQPSRRERAKMNPAGLSLLRHWEKLKIKEGVLYRVIQDPHSKLKRYQLVLPSCLKEKALRGVHDLAG
HQGQARTIHLARQRFFWPSMGKDICDYIKCCQRCILAKTPEPSARAPLESIKTSMPMELVCLDFWTAEDAKKHSVDVLVL
TDHFTKLAHAFPCSNQSAKQVARKLWDRVFCVYGFPGRIHTDQGANFESALLAELLKLSGVSKSHTTAYHPMGNGEVERF
NRTLGSMLRTLPLKEKHKWPEQIQTLTFAYNATVHETTGFAPFQLMFGRVPRLPVDVMFGRVLHDPVVVDHSTYLKSLMS
HLHEAAEIAQRHSEREQRKQAKGYNKRVKGICLNIGDRVLVANKGERGKRKLSDKWDPVVYTVIDRNLQTHTYKIKDENG
RVKVVHRNMVLDISFLPVESSDEERIIPVSVSESDDDTCYNENEITMQDCDSVDSGGVIITLEDKEIRSPVVSKFETSQA
QDIDAEKGLESDQLDMNGGESSNQLRDLENSNSETSLDADLNCDTEEPTPTQFQTDPQNYTETQAAVPDIQGVRTRAGRV
VKKVNRLIESMVQKPFNIQGVGNQLKKRSESFLSLF
>Gypsy58_DR#LTR/Gypsy 45-3995 [Danio rerio]
MSLLQPPSVLSLQGNLAENWKVWLQKFELYLIASGVAEKSETVQCATFLHIAGEEAIKVYNTLQFTAEEVNKIDALKRKF
KEYCEPRKNLPYIRHMFFTRTQSTGETIDAYVTDLKHKAKDCEFGDLTDSLIRDRIVCGIKDDNVRARLLREADLTLEKA
IDTCRANEITSNQMKMLVEEVDVNKISSVKNTKRRGKTVQFEQKSRQHALENQSKTHVKCSRCGYQHEYQKCPAYGQVCK
SCNKRNHFAKMCKTQVSTKKIQSIDENEQSDDERSDFFVGTIELQTNQRVKNVHTVTTEAQNLKDNWTESLRINNKSVTF
KLDTGAACNVMPHNVFTTLETQRKLKKSNCHLVTYSGHKMSPVGQVQLTFTYRKQKHNIQFQVVDGNVPAILGRTTCEKL
KMVKRIHEISESENKADPLKGFDDLFCGLGCLPTVHHIKTDPDVSPVIHPPRKVPIALKDKIVEELHKMESMGVIVKQTE
PTDWVNSMVTVVKPNKIRICMDPQDLNKAIKREHYPLLTVEEVVSSMPNAKIFSVLDANQGFWQIKLDEESSKLCTFNTP
IGRYRFLRLPFGVSSASEVFQRAIAQMLEGLKGVVNVIDDILVWGETTEEHDHRLIKLLERARECNLKLNKSKCQIRTSE
IRYLGHIISEEGLKPDEEKVRAIVKMPPPENKQALMRFMGMVQYLSKFIPNLSDISAPLRKLLEEDIQWHWEEEQQKSFT
KMKNLLANAPTLQFFNVQKPVTLSVDASSEGIGAVILQDKKPVAYGSRALTDAQKNYAQIEKELLAIVYGCEKFHQYLYG
KEVEVESDHKPLEIIFKKPLHQAPPRLQRMLLRLQRYILKVVYKPGKEMHIADALSRAYLNECTEDLLGQQLELCCITTY
LPVSEEKLNVFRKATATDQEMQLLCKMTMDGWPKEKSEVPKQIQTYWTFKEEISFTSGLLFKSAKIIVPSQLRKEMLTKI
HESHLGVVKCKERARDVLYWPNMSTQIEEFVSQCPVCNAHKNSNPREPMISHPIPGRPWSKIGTDLFHFDGSNYLLSVDY
YSKFTEISKLSDTTAQSVIMAMKSMFARYGIPDTVVSDNGPQYASTEFSSFAKAWEFEHVTSSPGHAQSNGQAERAVQTI
KNLLKKAQCGKNDPYISLLEYRNTSLDGIGYSPAQLLMGRRLKSKIPTSVTLLTPENNIQIHHKLKQRQHKQKSYFDRQT
RLLPNVHVGETVRVQQGDVWKPAIITRKHEQPRSFIIQTPEGRTYRRNRKHILKTGEKSFTTVTDNTVSDVIDSHVPDTS
SMLDNDTQETVVTESQSHEYITRSGRQVKLPSRYKD
>Gypsy51_DR_pol#LTR/Gypsy 1746-6302 [Danio rerio]
MENETLIDKDELQIFEESCKATPDKNVLFQNVMKLEKADSLFYTDVSIVGANVTLRALLDSGSMACTINKEAECKLKSAG
VVLTSSEKRPDIILVGCGGVNVQPESICHLEIEVYGYVVNVPMLVVPGQRDEMILGTNVIKYIVSQMKNVQGYWHVLSHP
ESSGNDDIAQFLNMLSGLHRWKGTEMPTKVGTAKLTQAVVLCPQREHLVWAKLPANVPISEGSAVLVEPAKSHSSKNVVI
GRVVASMSSDGWVPVKVLNASDKPVTLRRNAKMADVSPCIALEDLDLSPQLPASHELISSSQVTICMDDNATSSDSRSPN
RLDSFGLGDLNIEACEVSQYWKEKLVQLICKYEDVFSKNKLDCGKANGFYHRIHLVDNRPFRLPYRRVPPAHYHKLRHVL
SEMEELEIIRKSSSEWASPLVLVWKKSGDLRICVDYRWLNARTTKDAHPLPHQADCLAALGGNAIFSAMDLTSGFYNIEM
AEEDKRFTAFTTPMGLYEFNRLPQGLCNSPASFMRLMMHVFGDQNFLTLLCYLDDLLVFAPNESEALKRLELVFIRLRAH
GLKLAPKKCHLLRRSVQFLGHVIDQKGVSADPDKVQAIAAMDERDLMLEDGVTPSQKKIRAFLGMVMFYQRFIQNCSSIA
KPLFALTAAPKGQRNNGAKLSHWRKLSPSDWKSEQRDSFNMLKSALLETVVLAHPDFNRPFILSTDASLDGLGAVLSQIP
EGETRARPVAFASKALTRAQSNYPAHRLEFLALKWSICEKFSHWLKGHSFAVWTDNNPLTYILTKPKLDACEQRWVAKLA
PYNFSIQYIPGSKNVVADAMSRQPFVQGRISQRLVSEPYETLMEQAEQFKKDVVQHAFRISAQCQSAEPQCLLSSDEVSA
ILDSRAEWSAGPKDKVHHWLIQDVHNLVPAGQDTLPMFTLGELQNKQLADPVLARVLSYVTRGRRPSRRERTKEAPRVLK
TLKQWEKLKLLDGILYRVCKDQLTGKKRWQYVVPTSLTDQVLTGIHDKAGHQGQSRTLYLARERFFWVQMERDVREHVKC
CKRCVVSKTPEPEAKAPLESVRTTRPLELVCIDFWSAEDRKGGTVDVLVVTDHFTKMAHAFACSNQSARQVARQLWDRYF
CIYGFPERIHADQGANFESELIQELLQFAGIKKSRTTAYHPMGNGLTERFNRTLGSMIRALPPRDKQKWPQMLQTLTFAY
NCTAHESTGYAPFYLMYGRIPRLPVDVMFHSIGRDDDIMDYDSYIAKMRDDLKEALNLAQANARASQERQAELYNKGTKG
CDIEEGDQVLLANKGERGRRKLADKWESIPYVVISKDSRCHTFRIKNTNTGREKVVHRNLMLKANFLPLEVEVGESCDGS
LSSQEQSDGTLMESLTQNDPVETERIVEWVASLPAKDDSVRGGSDIGYQEDPVDSGEQRKLTSIQLQESENDSTGVNSHT
VPATLTEELSVPRVDAVPCPRSTSSLSISSAPPNVSKIVTQVRTRAGRLVRPVNRLIQNMTQRVNHNAVVGVTKSLLF
>Gypsy49_AG_gag#LTR/Gypsy 1387-2322 [Anopheles genus]
IRKQVRFLCIGFVNHRVMSLKAGAEGKGEESSSSAGTTKVSAPGDPPLGVERISTKLPTFWEDVPEVWFAQAEAEFELSK
ISRERTQYTYLIAAMSKEVLAKVLDIVKSPDPVKPYSHLKGEILKRLTSSEETRLSKLLYHVEIGDRTPSDFYRYMLQIA
GDSTDLSVTLVRKLWKSRLPKSIEVALVAVDTKDHAEQLRIADRLWECTQSSGLSEVNTRARVTCDSASDEIRREISELR
DMIKKMSNLSQRQHRDHRRSFSRERRNFQSPSRDRKPFCWYHYRYGNGATKCVKPCNFSTTRVKHSEEEKN
>Gypsy52_AG_pol#LTR/Gypsy 1906-5319 [Anopheles genus]
RNAGDVQLLVDSISSASHRLIIKDYKTNQPFLIDTGADVSVIPRQHSSVPCKPSTMKLFAANSTPIQVYGESLYTLDLGL
RRAFLWNFVIADVGTAIIGADFLQHFHLLVDLRDKCLVDALTNLRTPGVPDPHPGEPTVKVCDSTSPIATLLREFPGLTA
RTAPGTLLQSDVTHRIETTGQPTFARPRRLSPEKYAAARAEFESLVQLGVCRPSNSSWASPLHMTKKADGTWRPCGDYRA
LNAKTIPDRYPLPFLQDFTMHLQGKTIFSKVDLHKAYHQIPIHPEDIPKTAITTPFGLFEFTTMPFGLRNAAQTFQRLIH
DVLRGLDFVFPYIDDMIVASSSEEEHHEHLRQLFQRLEQHHLAINPAKCEFNRSEIAFLGHLVNAEGIRPLPERVRAISE
LSKPATIMELKKFLAMINYYRRFLPHALTTQSILLEMTPGNKKKDKTPLKWTPESSEAFDRCKEQLQQAALLAHPALNAE
LSLWTDASDFAAGAVLHQRIDGQLQPLGFFSKKFEKAQLNYSTYDRELTAIYLAVRHFRYQLEGREFCIYTDHKPLTFAF
RQTLDSSSPRRARQLDFIGQFSTDIRHVSGEENITADLLSRIEIVNASPAIDFERLAEEQTNDPELADILSGKTRTDLFL
QKTPIPGSTQSLYADCPGGIIRPYITRSFRNQLLHAVHDLSHPGARATAKLMTERFVWLDIKRDAQEFARNCLACQRAKI
GRHTKSPLVPYPATQDRFSHINIDIIGPFPISNGNRYCLTIIDRYTRWPEAIPIPDITATTVVSALLYHWIARFGVPSHV
TTDQGRQFESALFKELTRALGTKHIRTTAYHPQANGLIERWHRTLKAAICCKDTSKWSEHLPLILLGLRTTFKNDINASP
AELVYGTTLTIPAEFLIEKPQPAMVNQSDFAKTLREAMSKIRPSNTAWHTNRTSFVHSDLNKCSHVFVRNDTVRPALTTP
YHGPYQVLTRNSKSFQILLNEHPSLVSVDRIKPACTTEGIISSAPQQPSPDQLLTSQGYATPVAQPPSTQQSTMSQRLTT
PMPGPSTLDQLPSYNQSSLPDQQPTATQSPSTIQLPSTNQPPMSRNRATRTSPMPSLQPARATTSFAPPPPILRKDQNVS
TGVTRSQRRVVIPLRYR
>Gypsy58_AG_pol#LTR/Gypsy 1296-4550 [Anopheles genus]
RNRSPRRFLQPAEKRQQKGEVQEKKRTSVDMRTVTVNVCNVQQARKFVNIFINSNRVRLQLDTGSDITVIGRETWQQLGK
PTLKPVTVHAKTASGSRLELDGEFEAQITIGDRTRSAVIRVMDSALHLLGADMIATFELGAVPMDQFCNKVEAEGVKWES
RFPALFKGNGLCTKANVQIQLKPNHRSVFCPKRPVAYAMRATVDKELDRLEDLGVITPVDYSDWAAPIVVVRKQNGSVRI
CGDYSTGLNAALQSYEYPLPLPEDIFAKLAQCKYFSKIDLTDAFLQVQIKEEYRPLLTINTHRGLYHYNRLPPGIKIAPA
AFQQLIDAMLSGLKCTSGYMDDVVVGGKTEREHDENLLNLFRRIKEYGFTIRAEKCSFKMPRIEYLGFVIDRQGLRPNPA
KIDAILKMPAPTNVSEVRSFLGAVNYYGKFVPKMRELRYPLDALLKNDTKFVWTRECANAFNRFKDLLASDLLLTHYDPN
AEIVVSADASSVGLGATISHRYADGSLKVVQHASRALTKAEANYSQIDREGLAIIFAVKKFHKMLFGRHFRLQTDHRPLL
RIFGSHKGIPVYTANRLQRFALQLLMYDFTIEYVQTDKFGNADVLSRLIHEHAKPDPEYIIASAELENDVSSIASYCINI
FPLNFRDVAKATESDPVLKKVYGYIMEGWPQNVAYAAELACFYHRSEALTTVRGCILFGERVVIPSKLQQRCLKQLHEGH
PGIQRMKSKARSYVYWPSVDKDITEHVKGCHACAIAAKTSPREKPVPWPATQKPWERIHIDFAGPIDGDYFLIVVDAFTK
WPEVIRTRSTTSAATIAILRSIFARFGYPETMVSDNGPQFVSAEFSEYCSSRGIQHVTTAPFHPQSNGQAERFVDTFKRS
MRKIQEGGTTQDEALDVFLASYRSTPNAILPDMQSPAEAMLGRKMRTALELLKPPPAAQAEPANLDRRFQRGDLVYAKFY
ARNSWKWVPAQIIRELGSVMFEVQTNNQRVHRRHVNQLRKRDSAVGASSEDVDIDHLPFDLLTDSAVAESSSVPLTDHQT
SASPTQPSPRPIPFATTKRQQPIRSPRRSSRLRRLPRRLEGYRL
>Gypsy56_AG#LTR/Gypsy 202-4716 [Anopheles genus]
MNPSGSESSEEEQRRLSQMFWQQSAAAVHQPASGSSSAFVLGSLDQQARGQVASVQNPPSLVTAPAQNAGVPPSLSAAPG
QNATISPSHNTGQTLSSQPQNASSPDLMQMILQLQIQMNQLMMQKQHQPERQSVSVPVLNPEQILDSLSSHVREFQYDEE
AKITFAAWYARYEDFFAKDASRLEDEAKVRLLVRKLGAAEYNRYANFILPRYTRDFSFQETINKLTALFGNRESLLSRRY
KCLNTTKARGEDYLSYACRVNRVCVDFEIGKISEEQLKCLVFVCGIKNEEDVEIRTRLLSRIEDRTDITLESLTADCQRI
INLKEDSAMIEKVHEGNVYAVKKDVKQQQGFQHRQRSKQQLKFYRSCWSCGGQHLQRDCTRKRIVCNVCGKQGHIGKNCF
HRRKPFGFRRRNDSADLRVVRVNAMSVCGRRKFVPVKLFGMDVRLQLDTASDITVIDRQLWKRIGSPCLRPVTIRAKTAS
GARLQLNGEFRAQVGIKEKSLVATIRVADANLRLLGTDLIDRFNLWSVPMDRFCCYISENQERPAESVMKIEQIKEQFPT
VFRNTLGLCTKANIKLKLREGVAPIFRPKRPVAHAMESAVDDELNRLEKLGVITPTNFSEWAAPIVVVRKANGQIRICGD
YSTGLNSSLCAHEYPLPLPDDIFAKLSGCHIFSKIDLSDAFLQVQIDEDYRHILTINTHRGLYYYNRLPPGIKVAPAAFQ
QLIDTMLAGTKRVCGYMDDLIIGGATEAEHDRHLKDVLKRIEEYGFTIRNEKCEFKTNEIRYLGHVIDSQGLRPDPNKIA
AIRNLPEPTNLTEIRSFLGAINYYGKFVPNMRQLRFRLDELLKHGERFQWDHKCKEAFDQFKKILSSNLLLAHYNPNEKI
VVSADASSVGLGATLSHRYADGSMKVVQHASRALTEAEKRYSQIDREGLAIVYAVTKFHRMLYGRHFLLQTDHRPLLQIF
GSKKGIPIYTANRLQRFALTLQLYDFEIEYVRTEQFGNADILSRLIKNRSQPEDDYVIASIEMERDVKAMAIEAMSNFPI
SFREIERHTSADAMLRKVRHYIQDGWPTSVSYGNELACLNSRKDALTLIDGCILFGERVVIPQRLRERCLKQLHQGHPGM
QRMKSVARSYIYWPFLDRDIMEYVRTCSSCATAAKSPPHESPQAWGKTNTPWERIHVDYAGPIDGEYFLIVVDAHSKWPE
IFKTPSSTSTATITMLRGLFARFGMPVTLVTDNGTQFTSEAFSDFCLKNGVHHMRTAPFHPQSNGQAERFVDSFKRALRK
IRIGGMALQEAIDIFLQTYRTTPNPQVEQNKSPAELMFGRHIRTCFELLRPPPRLENQATYNSTRLFKQSDLVFIKEYSR
NNWKWIPAVIVRRIGHVMYLVQTNDRRTRRCHMNQIRQRFYESTENRSLASIPLSVLLESWNLPLPPQTTINPSETETPV
ACTSIPQTSTTCMLQPESASQPTIASSRSTQHTPCHREAQQPLAPRRSSRNRTVPRRFAPYRMN
>Gypsy3-PTR#LTR/Gypsy 368-4588 [Populus trichocarpa]
MTGQEFLKSGFHIPLPRMELSTFRGEDPRGWMRKCKKYFRIHSIPAHQWIEVVSYYLEGKADVWFEGLVRGSDSLIEWEE
FSQDLCRRFGSKDDIVEEFNKLIQDENMDDYIERFEELRSLMGDLNPLLPEAYYVSSFISGLKDEIKPMLKILKPARVLV
AFEQAKWQEEANNALTKKTRSLQRSNPPFHSGRIPGNAPSKYFGPSRTKGVKPFSDSLYEQRKKLGQCFKCGDKYMPGHR
CNSKGLHMIEGVEGGEDEEIGEFEDNMQGTDQIDEYGLSLNALADNDTYNTIRIKGNCQGQNLIILIDSGSTHSFINEST
IKALNATTSKTTLLAVTVANGNVMLCEKHCPAFTWFMHNYEFKSNLRVLELGRHDLVLGVDWLKKYSPVLFDFIKLRLSF
KKDGRMIELKGISQGAELQMITTLKEHRSFKNVIGGLVGQFFAMDSGKENKPTETRAEIKSLLVEFAGIFEEPRTLPPAR
RFDHKIPLKPGSQPINIRPYKSSFIQKGEIEKLVKEMLSNGVIQHNVSPFASPVLLVKKKDNTWRFCIDYRQLNEQTIKN
KFLIPLIDDLLDELHGSSFFSKLDLRSGYHQVRMHEEDIEKTAFRTHHGHYEFRVMPFGLTNAPATFQALMNSILEPYLR
KFVLVFFDDILIYSPTFERHLVHLRQVLETLSKNQLLAKRSKCAFGEQQVEYLGHVISITGVSTDRKKTEAVNNWPVPQA
LKELRGFLGLVGYYRKFIRHFGVISKPLTELLKKNNFGWNDQSQQAFDHLKKALCEAPVLALPDFSKTFFLETDACDSGL
GAVLSQEGRPIAYFSKALSPKHMGLSIYEKEYLAILMAVEKWRHYLEQEQFVIQTDHESLKYMLDQKIHTSIQKKGLTKL
LGLRYTILYRKGRENIAADALSRKHNNSSLVTVVGELKAVASILPAWYEEVHATYDKDLKLQTIIMGKMMGDTGNSDYTY
AEGVLRYKGRIVVGQEGELRAKLVKSVHDSYVGGHAGIQNTFRRLKANFYWSGMKTMVKRIVEECDVCKQAKADRVTYPG
LLQPLPVPNGTWEAITMDFIEGLPSSDGKTAIMVVVDRFTKYGHFIALSHPYTAQDIAQLFLDHVYKFHGLPAVIITDRD
KIFTSIFWKELFKKLGVQVLMSTTYHPQTDGQTERVNQCLETYLRCMTMHHPKRWFHWLSLAQWWYNSSHHSTLGMSPFQ
ALYGYLPPQREWIAQESTPVAAVEDVLQRRANMDLALKKQLEAARHKMKQVADKHRSEREFSIGDLVFLKLQPYRQNSVA
LRRNLKLNPRYYGPYPIIRRIGMVAYELRLPEGSLVHPVFHVSLLKKKIGDTTITSSKLPRTDKEGRMQIVPIAILDRKI
MKKDNRAVTAGLIQWSNLFPEDATWEDLEELLKQFPESIATLLTSTT
>Gypsy2_MH#LTR/Gypsy 528-4733 via tfasty with Gypsy6_CB, 2 frameshifts. [Meloidogyne hapla]
MSTLSPDQLKQLIDSFQVVAQQLKTSSGASINSATLASTLEARIGKYYFDAEGGNTFDNWYKRYGNFIEIDGKDLDESAK
VRLLVGKLGDQEYSRLANSVLPKLPDQLKFKEVTEKLNTLFADSKSLFVRRFECFQFKQQPGQDIGTFISSVNASCETAN
LSLSKETLKCMIMVVGIRDEYHDLRQKCLQILEEARKRNEEISLDKLGEECRSFPLLRESARSLSIVANGTPATNALSAK
PQKWRENKPTVRNKINPKQSSHKQKNNSPSTPCLSCGNKGHWRSECQQRWSNCLKCGKKGHISAVCRSSNFQGNKKPPAI
HHISFGPECLGTDFKNSDWWTVNPLINGIPCEMKIDTGSQISVFTSKTWKHLNSPKLEKVYFSAKNCNGAPFILRGKFKC
NVQHKTTQSTELVGYVSDHIVHDLLGLPWIKALDILQTESFCSNINTAKPLKSTLKAIKDESSLGKSLQNNFKECLWPEG
LGHCTKMKAHLHLKPEAKPIFSKARPVPYGATEEVNAELDRLLAIGSLKKIDFSDWAAPILAVKKKNGNIRVCIDFSTGL
NNALELNRHPLPRVEDIYASISGAKFFSQLDLRDAYLQIELDDESKKLCGVNTHRGIMQCQRLPFGVKSAPAIFQQLMDQ
MLSGIPGAFAYLDDIVIASPSMEKHIETIFELFSQIQRFGLKIHLEKCSFLKKEIKFIGHIVNSSGIRPDPARTEAIRQM
PAPTDITSLRSFLGAINYYGRFIKSMREIREPLDKLTRKDIAWEWSSEQETAFAKAKQILTSDLLLTHYDPKLPIVVAAD
ASKNGIGSTISHMFPDKSEKVIEHASVSFSSAQQNYSQIEKEALALVFAVQKFHKMLYGRKFTLQTDHKPLLAIFGSKNG
IPIYTASRLQRWAITLSNYDFDIKYVNTESFGKVDVLSRLIAEYPRPEEDKLIANICSETEHYVNAICENSTSVLPITAT
EIANKTSQDPILLKVCNFIQTGWPQKCKDPDLTPFFPKRNQLSIVENCVLYGHRTIIPPTLQQSVLKAMHLAHPGISKMK
AIAMEPGINLEIERLVRSCEDCQNAAKVSTKVPLCTWPVPKQVFERVHIDFAGPCSDGFTYLIIVDAYSKWPEVYRMQNT
SSKETIRTLQLLANRLGLPKEIVSDNGPQFRSFEFATFCKQNGIKHTFTPPYHPQSNGQAERFVDTFKRAMKKCQREGKD
WAEKALLAYRTTPHQAIDGYSPDQLFLGRRLRTKLTLLHPDEKIVKEKVSATLPLKRQEYNSKMTKSFQQKHGAKQSEFC
PGESIYLLNYRYGKTMWIPGKVITRIKNSPTYKISVPSIGHDVHRHANQLRRRLPIELDDDEVTDPEEPPITHEEDARDE
LPSPHKPIEKPPARQSPRAKRERRPPRRLELDPQQKTYTYVR
>Gypsy3_Dmoj#LTR/Gypsy 874-4453  [Drosophila mojavensis]
MTESVIKPFLCESLGNALLQNEWEKWLRAFMIYLEVEDVKSVIQKRTKLLHLGGTQLQTVAYALPGAIVEFSEADQNDVF
TVLVDKLTAYFSPKQNSTFERHLFRKISPEEGETFGKFILRLRQQIQKCNFGSTKAEIEEICFKDKIIDTWVSTELKKKL
LEKEHTLNEIIEACQVDEEINKQSQLMQSKPVPETIHKITNLKSGKIGDCGRCGRPGHREDSPMCPARQVKCSRCSRVGH
FARRCRTNLKRPYPHSNNKEAIGNPKRKYVHRIENGNPEGNKTIQRNCFKIDSDEEYEEMMQCRIGGADVSLVIDSGSRF
NIISQDDWLTLQLKKATVLNVRGSSQNQFRGYASDQILNVICIFEAPISIKLNAEVIASFFVIEKGRQSLLGRETATKLN
VLRVGLPINNIEFVPPFPKWKGVRVKLTIDPYVNPVKQPMRRIPVALEGRVNAKLEEAYKLDIIEPVEGHSPWISPMVIT
FKGNGDIRICLDMRQANRAILRENYPLPTFESFMTKLKNARIFSRLDLKDAYHQLELDESSRQITTFITPRGLFRYKRLM
FGINAAPEIFQRRMEELLAPCNNVMNYIDDVIIFGDSKEEHDKTLEQIRSIFKDNNVTLNNEKCSWETNRIKFLGHILTD
KGIEVDPDKTESIRLFRAPKNKEETRSFLGLVTNVGKFIADLADLTEPLRELVKKDRKFTWGPTEENGFQKLKSVLTKIP
NLSYFNPKNKTRLIADASPVALGAILLQFNDEGEPNIIAFASRSLTDVEKRYSQTEKESLALVWAVEKYYFYLIGLEFEL
VTDHKQLETIFKPTSKPPARIERWLLRLQAYKFKVIYKSGKENIADSLSRLCEQTPSSCYDIKGEHSILRIVESSAPIPI
SISEIAENSTIDEEIVDAMTCLQQGSWDSAMSKKLYPFRHELSAIGAIMLRGVRIVIPTTLRQKVLVLAHEGHPGESAMK
RRLRSKVWWPQIDRDTEKFVKNCFDCILGSQATNPPPMKRTEFPNGPWISVATDLLGPLPNNEYILVLIDYYSRYMEFKV
LRSITSESLIGACKEIFSRLGYPKQLRTDNGRQYISLEFKNYCKSCGIEQLKNVVFPHKLTPMFDTTEYEVLKREGNIVQ
VSGGGKTLLRNANHLKRVLGETEPADVTNAKSVPIPATKPTPQPAAQFEDQAPAEDHGNSTEGLKLKLVRKGG
>Gypsy4_env#LTR/Gypsy 4826-6288 [Drosophila fruit fly genus]
YFYYRLGYLCVLASAITLTITTMKLNDYSHADYIPIIDGDLTIWDRYGYLGHTSNITSYETYVEDTRRQLNYFGKDHMRN
LITTDLGHIESLIATIRVHHRHARSINLLGTALKVIAGTPDFDDWEQIKFKQGQLIDSANRQIEINTKLQSRLNEITRSM
NAISKTDNADSEHLFESILAKNRIIITNLEDLILSVTLAKINLISPLILDSVDIHELANELLTNTSLADILRVSSVKAFQ
NNDLLYFLIKYPKPETVCKKINVFPVQHNKIILDFENNNVVAECGARIYAVKECNAAMSTTFCKRLQNPTCAQQLVSGTV
AQCTTLLGHLDPVTLVEEGVLIINDATFRVEDSLGSSKMISGTYLATYDDRISLNGTHYENHQGVLKKKPAAAVASQINV
TSHRDQLSLSFLHELSLQNLQHIGSLKSDIISRPILSSGVTIAVVLIVYGIIQSIRYCRVKRRHPDSSIEMTIPSRKAED
DFNLTRG
>Gypsy4-NVi#LTR/Gypsy 120-4195 via tfasty with Gypsy22_AG, 1 frameshift and 3 stopcodons.  [Nasonia vitripennis]
MGETTTTTSAGTTTTTTTIANTTAALRIDNYVHGEMKWDRWIRKLEIGFMYHAIDESRKATCLLFHFGDKAFDSLCDFLN
GVKPITLQYPELKEKLKDLFSPKVIEISENFKLSNRKQLPGEDIKTFTNALNNLSLQCNFGTYKDKALLNQFVIGVRDTR
LRRKFLETSDLTYEKAIQTVGALELTEQENSTLSTATNTSVNSLHVDKKVVPRSQKNQKAKSKQARGKNNKNYKGQDKTQ
NTTKYIQCYRCAGEHTAKHCTVNPNNLSCGQYGRRGHVTSVCLKGNNTTNFIEKILLVEHFNARDKYTTTLPVNNTEVTF
EIDSGTAVSLMSEEDARRLFKGTTLFRTQTKLVSYCNMQINVTGFIKVEVKFANQIFNLHLYLTTNKRPPLLGREWMKAM
LKCGNANQLFAEVSQITESNTSASDRKKIIENLLKQYSNCTKTDMGKIKGITATLKLKENAQPVFLKARPAAFRLITLLD
KEIGRLVKEDILIKVNSSKFATPVVPVLKRDGTIRMCGDYSVTLNPNLIIDEHPLPTPDDMFTSVKDSKHFAKIDLHQAY
MQMEVDEASSALLTINTHRGLYRPTRLMYGVASACAIWQREIENIFRDLEGMFVLLDDIRIAGRTQTEFLHRLEAVLRRL
HDYNIKINQNKCEFFQNEIEFCGYVINEHVIHKSKAKMEAIEKMPRPSNVSEIRSFIGFVNYYSRFIDNVSEILRPLNEL
LRKDTKFVWARECEAAFCKAKEAFVSDKCLTFFNPKLGLILATDPSPTGVGAVLSHKFPDGTEKPIMYISQTLNKTQSKY
AxIDKEAYAIVFAVKKLHRYLYGGKFTLITDHRPLTQIFSQRNNLPIYNALRMQHYAIFLRAYNYDIVYKRSENNCNADG
LSRLPSPKATEHIDVIDVHYINTIQAMPVTITQIREAMQKDANIMKIVKALQTGKQLSAKGTWNVNPLEFSLEQDLLVRN
QKVVIPTPVQLRDAVLQELHTGHFGVVMMKSLARGHCWWPGIDTNIEDMVHNCTDCQTHKHHAPAVEKHIWDPPSKPFER
VHCDFAGPFLNKYFLILVDAYTKWPEVHITRGLTSEETILVCKKIFATFGIPNIFVSDNGRNFTSRLFSEFMKFYGITHK
LTAPYNPSTNGQAERYVQTIKDALKKIASSNNLENKLQDILLQYRITPHSATGISPSELMFSRNIKSKLDLMNPSLSSKN
DSPYNVNKQIRDFKINQRVSARNYVGDKKWIFGRISKRIGKLHYNVTLDDGRVxKRHANQLNKIGNNIPPSTLRYDNEVI
ETPPNEQIKVYPSISKQIHVNRDxSLNSLSRSSDYASCSTDTSIEAQPKSRGRGRGRGCVRQKSQKEEQIPGGPRRET
>Gypsy2_CB_orf2#LTR/Gypsy 3366-6719  [Caenorhabditis briggsae]
MILVSNVLTPYLPFRQPAQPQFERPQSPDGQVCDYVTLTERLRSPRINALAHPTEYFSAVVPLKANGINCWALIDTGASF
TVAGQGILHLLGIPRLQEPLSYMAVGLGNNEVKMAGSAVVKFQIGSHVLFQNTHFTTGQCTPGGPRDYDFIIGNDAHYMV
TDVELPSEPAQRISESTTLQMIQDFRNETTKWMTIDTPITSVPNGKRNPNVATLSRFDCDRIFALYIVKESAGGNLHLNP
AHRELVSYDRPDLYTVHLTRHSEDILNPGPPNPANYYIGDLLVVLSLKRRPGAKLNEIKRDFVDILDMNKCHFWQVNKFA
LVQRKVEKDQPLWKMDDLKEPIDPRRKLKMPWKAECIGYNQNQVVEAKIALFKELHPQDQKCTAADILVPVLEPASTLRS
LLPGDARHAVITATNVQPPIVPLKPTVTAVRVLPGKFRKYISIAPNAFKGAESDPDYDLGGKALLWTARFGLAATLAIAN
KGRDTTTYSTTITESETTGRRSTVTFTIRRPSTAAPVSSWTRSTAFKMDISPGGTCDLEVESATLINTQLTIRAKFTFES
QSRINEKNLLNQNAVVWQQLDDNLHQLRTFPEPEDWLKVPVDSPSGNVLIALTGGPEIDGIMPWDKTDVVDFAGSAVKLS
EEQSYYANTLAKTKIAGVIANAPPGVGKTLMVAGAAIHAIRETNDLRSIQTLTGMTNVSVLPMVKTLRTLDPETRYPPVR
LISESHREHLDPALRTEIDYPILWIKVFKDLLHRIDPSTAVATIRENPDLMSAIQHLHAKKIDPEEFAHHFIRKAVAKGP
NSDRNTTPKAELFRKLYNPRIVVGTVASVLESFKTPDWTWLRENVSAIQVDEASQLPLYALAALALMFQRARLALVGDIH
QLPPFEDSDLPKDIAAFAISRVLQEAIKRRTLPIIDLTVGRRCPPQVTRMYNELFYNQRLTSLWSPEKEAELRAFTAALK
FGNDFPIQILDLQSSHTQSGTSLTNIEEAKAAVRIARTIQTRVGTNDIGILCFYKAQAGEVAALLGDAPFYVGTIDGSQG
HEFQAVIILTTRTSSFRDSEFIEDCRRINVAISRTKRICCIIVDRPKVTTNGTWSRLIRRIPHEAKSNFSVMTARWL
>Gypsy1-NVi_pol#LTR/Gypsy 1933-5064 [Nasonia vitripennis]
VGFKKLNEPFLAETSGDGSSGSKRLTLKDLKSGRRFLIDSGAEISVLPASYKVNSKPSSRKLYAANDTTIDTFGETFLLL
DLGLNRPISWNFVIASVPHAIIGADILYHYGLTVDIRNRRLVDSVTSLSSVGLIKIVPVLGIHSVASSSKCAQLLAQFPK
ITGSGPHDPQFKPDIVHHIYTTGPPVSERPRRLSAEKLRAAKAQFKAWQDAGICRPGSGPYASQLHMALKKDGSYRPCGV
YCALNAQTVPDKYPTAHLYDCTSELHGKKIFSSLDLLKAFNQIPIAPEDIEKTAIITPFGLFEFMYMTFGLRNASQTFQR
YINRVLGDLKFVFIYIDDILIASESVEEHFEHLRIVFERLNKFSLRINVDKCTFVVEELVFLGYSINSQGIRPTQEKVKA
VLNFPKPNTVVELRRFLGMVNFYHRNLPHAAEAQVPLNAYFRESRKNDKRPIEWTAETSKAFEQIKSDFANASLLVHPRC
GAELRLVTDASDVAMGAVLEQKSLSNEWEPLAFFSQKFTPAQQLYSTYDRELTAMFEAVKYFSYIVEGCDFAILTDHKPL
IYALVQNNEKAPPRRLRQLGYISQFTTRIEHVKGSDNVVADALSRVETIRFPLEFDLADLAAKQEADQQLKEICESPNYP
LTLKRLQLGPEHTVIYCELTGESLRPYVPQSLRRSVFEFFHNTAHPGPKVSDRLIRQRYVWPNMHRDIAAWCKNCLACQQ
SKISRHVKTFPEHFVAPDGRFDHVHIDIVGPLPVRDGYQYLLTMIDRFSRWVEAVPLQETSAQTVARAFFDTWVSRFGAP
KVITSDQGAQFESRLFTALLSLIGCERIRTTAYHPAANGMIERWHRTLKAALMCHKDDDWLRTLSTVLLGLRCHVRADTE
ASPAEFLYGTTLRLPGEFFIPEDITPDPQIFVEEFREHMRLVRPIPVAHHYKKRIFYFKELHNCTHVHMRNMAKKSLERP
YSGPYKILSRESDRVFKIEVNGAPRTVSVELLKPAFFIAENLVDSGGVSNDSSKGNQPPVPSPVLKTYPAKKIRFSSDTK
AQA
>GYPSOR1_gag#LTR/Gypsy 195-992 (matches XILON1_ZM_gag; as if there are two gag proteins) [Sorghum bicolor]
MPPRTRSAARMAAEEYRAMFNLGGQHVDGVPELEDEESRVEAQEEVPEDEEMQDPPPPQSANARMGWTTELWIPEADPKD
FFHENLVLTLKHHYPDLQATLEYNCTEHKHPLRRSLWVAELIVKTLDATKGFRKVESKHIARISRDTMKESMADAAYQAL
VFYRGRRFEDVQYNATYHYPRFVPEKMTWAIEVADASQPKLQAQVELTYELTLKVIELENELHRERKLLEKEQREADDLR
AELGRPKLHKRLHVEPILKDAAPEE
>Gypsy1_AG_pol#LTR/Gypsy 783-3872 [Anopheles genus]
MSKPLPVSSVKKLDFRPSEIGEVGGLRISRRLQIFDKSSGIRFLIDTGSDVSIIPASKIEKTREPSPFLLHAANGTKIRT
YGSKFVSVDLGLRRKFSWNFLQADVTSAIIGADFLAHFGLLVDLGNRKLIDGGTKLHTVCGLSKSSVYGVTTIAKDHPFR
DLLVEFREITAPPTMRTEVRHNVTHHIQTTGPPVASKPRRMPPDKLQAAKKEFETMMELGICRPSKSSWASPLHCVPKKN
GQWRFVGDYRSLNRITVPDRYPVPHIHDLLNNFLGKNCFTTLDLVRAYHFVPVEESDVPKTAVITPFGLFEFTKMQFGLC
NASQTFQRFMHHVFGDLDFVVVFVDDICIASSNEEEHLSHVRTVFERLKSNGLVLNLDKCKFVQKEVNFLGYHINASGIK
PQANRVQAVVDYSRPITVKDLRRFLALLNGYKRFIRNAVSLQQPLQALIIGNRKNDTRKLQWTIAADEAFVKCKESLANA
ALLSYPDSSKRMGLMIDASDTAAGATLQQNVAGAWQPLGFFSQKFSPSQKKYSVFGRELTAMKLAVQYFRHLVEGREFTI
YTDHRPLTYALNSNSNHLPHEERYLQYISSFTKDIRHISGKDNSAADALSRVNTISAPSTVDFELLSKAQHDDPELQKLL
ADRTTSMNLQLRSSVSTNQLLYCDVSDNVHVRPYVPEKLRLEVLRNIHCLSHPGVRATRKMVARRFVWPSMNRDVARFVR
SCIDCQRSKIHRHTSAALNEFELPKSRFRHVHIDLVGPLPTSNGKRYLLTMIDRFSRWPEAVPLPDILAETVAKAFCECW
ISRFGVPETITTDQGRQFESELFTELTRLLGALRIRTTAYHPEANGLIERFHRTLKTSLTCVDSKRWCDKLPLVLLGLRT
AIREDIDCSVAEMTYGQPLRIPGDFLEPSKTEICRSEFAKLLCRTMQQIGPIRNSHHDKRSVFVPKDLQSCKSVFVRIDS
VKRPLTHPYEGPFQIIERHEKYMDLNMNGEKRRISIDRIKPAYICEKDSNEDNERTKVTPSGHRVRFLA
>Gypsy2_AG_pol#LTR/Gypsy 1989-5156 [Anopheles genus]
MKLFAANSTPIQVYGESLYTLDLGLRRSFLWNFIIADVGTAIIGADFLQHFHLLVDLRKKCLVDALTNVRSTGVPSQNPS
EPTVKVCDSTSPIATLLKEFPGLTALSTPGTLLQSEVTHRIETTGQPTFARPRRLPPEKYAAARKEFESLVQLGVCRPSN
SSWASPLHMTKKADGTWRPCGDYRALNAKTVPDRYPLPFLQDFTMHLQDKIIFSKVDLHKAYHQIPIHPDDIAKTAITTP
FGLYEFTTMPFGLRNAAQTFQRLIHDVLRGLEFVFPYIDDMIVASTSEAEHHEHLRQLFERLEKHQLAINPAKCEFYRNE
ISFLGHLVNASGIRPLPDRVQAISELPQPTTIMELKKFLAMINYYRRFLPHALETQGILLEMTPGNKKKDRTPLTWSLEA
SEAFAQCKEQLKRATLLAHPVKNAELSLWTDASDFAAGAVLHQRTNEDLQPLGFFSKRLEKAQQKYSTYDRELTAIYLAI
RHFRYQLEGREFCIYTDHKPLTFAFRQTHDNASPRRARQLDFIGQFSTDIRHIAGKDNVTADLLSRIETVHATPTIDYER
LAEEQERDPELSDILSGKIQTDLFLQKTPIPGSPKSLYADCPGGIIRPYITRSFRTQLLHAVHDLSHPGARATARLITER
FVWLNARKESQDFARNCLACQRAKVGRHVKSPLIPYPATTARFSHINVDIIGPFPISNGNRYCLTIIDRFTRWPEAIPIS
DITASTVVSALLFHWIARFGVPAHVTTDQGRQFESSLFKELTKALGTKHIRTTAYHPQANGIIERWHRTLKAAITCKDTA
RWSEHLPLILLGLRTTFKNDINASPAELVYGTTLTIPAEFFIAKPQNALADQSDFAKTLEETMSSIRPQSTAWHTNRTPF
VHSDLNKCTHVFIRDDTVRPALTTPYHGPYKVLTRNPKSFQILLRGQPTLVSIDRLKPAYGAEEEATPAPQCSWEGLTTN
LLPPTTDHSETLPLPDVQANSDRRDATAASKPTSREQPVRNQTTPAPPSHPTTSRQTDRAAVDAPPPSILRRNDQTVSTG
VTRSQRKVIIPLRYR
>Gypsy2-HV#LTR/Gypsy 44-3657 via tfasty with CALYPSHAN2_MT_pol, 1 frameshift and 1 stopcodon. no M [Hordeum vulgare]
QNFRKEKLTFEVVDFQSAYHAILGRPAYVSFMARLCYVYLKLKMPGPKGVITITGNRQRAEECLQEGSRIADHQMAVLEL
DEYKKTVNPADLMRSKKPASESAFQSAGETKKISIHPTDGSAAPTNISTTLDPKxEAELTQFLRENWDIFAWKPSDMPGV
PRELAEHRLHVDPVARPVRECLRRSAAHKRKAIGEEVAKLLAANFIREVHHSEWLANVVMVPKKDKSLRMCIDFKHLNKV
CPKDNFPLPRIDQIVDSTVGCERLSFLDAYSGYHQIRLYGPDELKTAFITLFGCFCYITMPFGLKNAGATFMRMIQKCLL
DQIGRNVEAYMDDIVVKSRKGSDLLTDLAETFANLRRYDIKLNPAKCSFGVPSGKLLGFFVSERGIDVNPEKIGTIVRME
RPVRIHDVQRLTGCLAALSRFISRLGEKTLPLYRLMKKSDTFEWTDEAQVAFDDLKVLLSTQPVLTAPLSKEPLLLYIAA
TNQVVSTVLTVEREEEGKAYKVQRPVYYVSEVLTPSKQRYPHYEKLIYGIYMTAKKVAHYFQDHSVSVVSDAPLSEILHG
RDESGRVVKWAMEMLYCYIKFEAKNAIKSQALADFIAEWVEQQQPTHIYSAHWTMFFDGSKMLNGSGAGVVIISPKGDKP
KYVLQIHFDSSNNEAEYEALLYGLRMAISLGVHRLMVYGDSDLVVNQVMKEWDVRNPTMTTYCNAVRKLEKKFEGLELHH
VPRLKNQAANELAKLGSTRRPVPSDVCLEHLHLPSVKEDPFTEEPVQPKSRTDPTEVDVPTVVDLVTEILVVIPDWTVPI
MAYILRQELPEDEVQARQIVRRSKAFTVIDGQLYKESVSGVLRRCISPEEGQLILEDIHSGTCGHHASSRAIVAKAFRAG
FFWLQANEMAKAMVDRCEGCQFYSNKSHKPTSALKTIPLVWPFAVWGLDTVGPFKTGQGGYTHLLVAVDKFTKWIEAKPI
KKLDASTAIKFVRDIISRFGVPHSIITDNGTNFDSDRFKGFCTSQGIRVDFALVAHPQSNGQAERANGLILQGLKPRLLR
EVGHAAGAWVTELPSVLWGLRTTPNRSTGRSPFFLVYGAEAVLPSDLFHNAPRVELFSEAEAEQARQDGVDLLEEEREMA
LTSSAIYQQDLRRFHARHVRSRTFQAGDLVLRVDQQRPHKLAPAWEGPFIVSKVLNNGAYKLYNIQRETDEPRAWNGDLL
KRFYT
>Gypsy5_Dya_pol#LTR/Gypsy 2005-5340 via tfasty with Gypsy12_pol, 1 stopcodon. [Drosophila yakuba]
DSEVAKLKSITETREFQEIEPLGQPDIHYSFIPLHIRIQNYNNKRREIFGKVDSIGTHLKPRRSTSRLREFWKKVRRDRQ
KLISAIVLSSDQRLYTDIHIEGQDYKALLDSGATISCVGGLAAQNFLKHNNVKKCSGEIRAANGTKSKVVSKLTTSIKYG
DTIDNLELFIIPELQQDVYLGIDFWQKFGLLNKVTSNPNIAELDIGTLDDDEDSPKYHELNEGERLRLETVIKTFPSFAS
EGLGRTTLSTHSIDIGNASPVKQRHWPVSPAVEKLMFAEVDNMLALDVIEESTSAWSSNCVLVKKGDKNRLCLDSREVNK
VTQRDAYPLPHIDGILSRLPPAKFISGIDMKHAYWQIPLDEKSKQYTAFTIPNRPLYQYKMMPFGLCNAAQTLCRLMDRV
IPAHLRNRVFVYLDDLLVLSEDFESHMLLLQEIALCLRKANLTINVSKSKFCMKEIIYLGFIIGNGQIRTNPDKVKAIVE
FPQPTSIKQLRRFLGLAGWYRRFVENFATISFPLTELLKKKNTLEWNGEAQTAFENLKSCLTASPILITPDFSKQFILLC
DASSFGVGCVLAQERDGVELPISYMSEKLSKAQRNYSVSELECLAVIKGIKKFRAYIEGQDFLVITDHAALQWLMRQKDL
SGRLARWSMKLRAFTFTIKHRSGSQNVVADTLSRQNDPAIDEFCQNGPIVDVDSPHFKSTEYLDLIKTISNNQSRFPDLQ
IRDGYIYKRTTFVSDDIKQENPWKLWIPSALVPDILFQAHDAPSSSHCGMSKTVEKLKRYLFWPxMVTQVRNYISNCVIC
RTTKSPNTVLKPPMGKPLTSDRPFQKLYIDLLGPYPRTKKGHIGLLIVVDHNTRFHFLLPLKKFTAPKICDYLKGAIFYT
FGVPEVILSDNGSQFKSSYFQAFLTSFGVQQKLTAIYSPQANASERLNRSVLAAVRAYIGKDHTNWDDNLDAISGSLRAS
LHRSTGSSPYFLTFGQNMILNGKDYSLLRTLNLLADDTRLSKPEALELQRRQAKLNLNRAHEENANRYNLRTRQIEFKNG
DFVYARNFTQSNAVKKFSSKLAPVFIPAKVYKKRSSYYYELEDERGKKLGVFHLKDIQARKQGVSSDKASLK
>Gypsy11-NVi_gag#LTR/Gypsy [Nasonia vitripennis]
MSASGHSASNSQSPSKTRSGTIFGSNMPLVHSDSEDEPLGTGSGKDNPSLGQPISDAQAFLEATLSSLQLELPNLIKGAV
APLQTQIDQLSDRLRLQTSLASGVENDRASALSTSNQAFSLNPTAPSFSASARVPVSSASLSLDNFKSNPIHTDTQTTMN
QPATNAPGSLVPADLIPTHTDASRPHSDAFLAQKINPGPFWTHNPEGWFVGLEINFEVLNITDDKLKFATLWRSLSRDVA
LRIDSTIRNLPLESRYEVVKQALLKEFSDTVEQRLDKLFERSALGSKKPSDLLKEMYIHAGPNIDKDGVRSYWRKLLPKD
VQFAIASLTDLPDDKLFELADRIHHIHNSVPDQRLNAVETDRSISSVDLQDLNKRLASLEKSLRESRNSSRSNNNSNRSR
SKSRNTKSRKSASGLCFAHSKYPDNPTSCRDWCSKNAEWKAKNQ
>Gypsy8_Dya_gag#LTR/Gypsy 2331-3352 via tfasty with ACCORD_gag, 1 frameshift and 2 stopcodons. (Gypsy8_Dya_pol has strange duplication in consensus) [Drosophila yakuba]
MSRKTIVDKTKSRLGLRSSSSLPEIREEEIIVMDSGNGSGGSRTTSPAPHVINMANASTILNTSMNTSINMTLNPQDILA
FVKQLPTFEGIPGTLQKFIVSVEEVIMLIRGTDQTPYGQLLLRTLxNKVIGKADEALNMLDTKRMYACKKSEPILISEIQ
NQPDGLPFGKLFHEINRLRSELLTLATDSEQGGCAASRxALYNGICLNAFLVGIRDPLRTAIRARNPSTIEQAHEWCQAK
QSFMYQRQNRPRNNYNNNFDHNRAPPNRPGGRFERYRNYPQNNYRTDNRRDNPFRQGEFRNNDNRGWNNNFRAGPPAPRQ
DNPDRRNGPPPRAPTNFNNID
>Gypsy11_VC_gag#LTR/Gypsy 671-2053 [Volvox carteri]
MPPCRLVLRSPQQNVACIITRTEAMDHAVHPTGAAPRDDFNKLLLDKLEQMSKRIEGIEAHIQAQAAAPPPPNPPEPIIP
AAEGLNVQPTAAEPPTNTVPVRPAEVNDQPAQVPEPAPPPIVAPATPAANCAPPAACKPATAQAGHVSGIVGYKDVQSIS
ALNQQPHQQNANHQSLKNFRQPPCFTGVPSTAITKPEIWFDTTVDYMTQSGSDPIMGMRYYVTGKAAEWYHDLFARKGST
LTIQSMRDDFVLLFGDVHRCTPHHVRTQLLAGAHAMKPGESIPNYVQRFREITRGDPNMSQIDLCTWLIHGMPPQLRREC
ATDANGNNWFAFDALVTYAQGAQTRHEAGKVQTARLNFLGTNDAPAHPRQNGGRGNHTQRGGSSSCADHHHHGGRYGGRG
GGRGGAYGGRGRGGSTEMPPWVKEMAKEKNICCHCGEPFGKGHHCGKRPRYNEDRKKADA
>Gypsy14_AG_gag#LTR/Gypsy 1218-2366 [Anopheles genus]
MLPKIKQYLKRLQDIEEKLKPGDKKFRRCLIEHYGVTANNTFEKIKNLVSKLKIAEAPVELETITKFANISYNNINSYIK
FQLQNKVQFKFKTLVKISIALRRWKRKTMEDFDIKTAATLVQLYDGNADSLENFLGSANLLRKLFPKDTKQILVEFLKTR
LTGKAQLGLAPNITDFETLIQDVKSRCQEKINPDKVIAELKSICHTDTKTLCDEVEILCTKLKVMYLKQNIPEQVANDMA
VKRGIETLIDKVKLTETRIILQAGQYTSISDATEKALESERMHNSAQQVFAFRKNFSAPNRSFDNRYSNQYTRNTYNRSQ
NRGNFTSNWQTNNRHQHNNFHNTNNRRFFRNTNRNNNRIYTTQATEQEHFLEENPQHTDYQS
>Gypsy12_DR_gag#LTR/Gypsy 153-1559 [Danio rerio]
MDISQTAQWSTEENINSSRAIVLSNVPLNTSDETIEKVLNTVKVFGRTQIHGRRGDVTGKHLFVLVETRADLDPSTIPPE
IGIESEAGPWPVHFVGRLQVQNPAPENDTFQSKLLTLMQQEGKSMDEVKAILMGEHSPKSDINVDLVDAIGKLVDRCNQA
SNDGPSYRKLRLFSGLKPVPPGEEEYEIWMEQAAQMISEWQCTEASKKQRIVESLRGPAADIVRFLKVSQPSATATEYLA
ALETAYGTTECGPDLMAKFRHTYQDNGEKLSAFLYRLDKLLHRALLKGGIDVAGINKARMEQLIKGALTNDMVALRIRMT
HTLQNPPSFTQLMKEIREEEHWVAARENVKASVATVISPQSDGPSELQSLKKEVKELSSQMSHLLNVATATCASECAPQK
TSSKNSESVKRDKSQPTKLTQQPVPGIFCYKCGEDGHKKWECKGQEDLRKVNQKLIKMHRLQGNWAGVQ
>Gypsy8_Dpse_pol#LTR/Gypsy 1298-4550 via tfasty with OSVALDO_pol, 3 frameshifts. [Drosophila pseudoobscura]
MRKSRHLGVAVLQEDGKRPATHAAEGRARVARNGPSSLVGRLICEEEQLSAVVEVAGVELQATVDTGATSSFVSRELADR
LKGEGREVAAKKRVRLADGHSQEITHQIETKVGFGNKEIPMVLLVLPGVIDELVLGWDYLRAVGAVVTCAGHRVVIPAQD
RERGGQEERLSVAKAEAGETGPEYANKTDTTLRTAAREVAESTNGNEGAREEPVEDFLARELEAFAKIEGVSNVAVHTIT
MSDPQPIKQRYYPKNPKMQAEINQKVDELVEKGCIEPSKSPYSSPIVMVKKKNGKWRLCVDFRQVNARSVKDAYPMPRID
YILDQLREAKFISSLDLKDGYWQIPLAESSRPITAFTVPGKGLYQWKVMPFGLHSASATFQRALDQVIGPEMMPHAFAYQ
DDIVVIGRTEEEHRRNLKEVFRRLRLANLRLNADKCEFFRKELRYLGHKVTGEGICTDPEKVAAIAELKPPTNVKELRQY
LGVASWYRRFVPDFATLVQPLTGLLKKKTEWVWTRERQEAFEEVKRRLVADPVLACPDFSKKFILQTDASDYGLGAILTQ
ETERGERVISYASRTLNGPERNYSATEKECLAIVWAIRRLRPYLEGYRFKVVTDHMALKWLNSIESPSGRVARWALELQQ
YDFEIAYRKGQLNVVADALSRQPVEERGRRIRNVEGTPPVGEPPCKWLEGMAEKIRKEAPKYPDYVEKGGNLYRHIPHRA
GSEEVASWKLCVPKYARERVLKESHDNPEAGHAGGRRTAARVAARYYWPGMYRDVRAYVRKCELCLRFKPSQLQAAGEML
TQVPEEPWATVCADFVGPLPRSKHGNSMLLVLVDRFSKWTELVPLRKATAEALIKACRERIIARFGAPKVFITDNGVQFA
GRAFKRFLEQLGVRHQFTAPYTPQENPTERTNRTIKTMIAQFTRGDQRCWDEKWPELMLAMNSGVSDTTGYSPAFVVQGR
EPRLPKALYDEETVGTGQGAETPEENAKKLKELFQLVRRNLERAAQDQARHYNLRRRPWRPKVGETXGPNSITCPMQRRD
SPRSWHQGTMGRTRXEDFISPVICSLRKEGDRKKRTAHIRDLKP
>Gypsy6_Dya_gag#LTR/Gypsy 759-2258  [Drosophila yakuba]
MPVVNTPPRTSSEGNIENNCALCSTVMDNTNPCYHLACKHVFHKNCVEAWLTENSCCYSCNAPINKKEIKVVVGNCSPFR
AQPLPVPTAPVQRGVTTRNLARALAQLEEANPANIPEPLPLNTSGAPSSVLDASQSTEHREGIARHPRGRPRSGRPVRTI
DSRRTQAVDYNTIQDMIEQTVTRVLSSLSIQHLPPPSNSQGPDMTREQASFSSSSISSRQTVDIMQKWGVHFDGSTDGLG
VEEFIYRIKALTDKTLGSDFTSMCKNMHVLFTGKARSWYWRYHKQVDGIVWSNICASLRQHYKDYRSDFMSMELIRARKQ
KHGEPFSAFYEAVASLIDKASIKIEEEEFIEILKNNLLPETRQKLLYQPVHSVGHLRRLVQMSENLSHEISCRTEQVKTK
SIPNRRQVFALEDHSSEVEEISPTGAEIAALRRSTEKLKCWNCEEIGHIWENCLADRRVFCYGCGRPDTYKPQCQNCLQK
QSENRPTGAFNKNRMPPKI
>Gypsy6_DR_pol#LTR/Gypsy 1200-5348 [Danio]
LQPAVGKLVPTKLQGHNLVGKRVGSNDHMPCLMSTCPKLVVTIGGVQVPCLVDTGSMVSTITESCFMTNFGLWGQEQLRS
CHWLQLRAANGLSIPYIGYLELDIELCGRVVSGCGVLVVKDPPGGMCAQTPGVLGMNVLSRCYQELFGQHGTGLFDLPAV
SQAPSFIFQALQNCHQAGVQPVKDAEGQVRVRGRRACRIPGGTVKFVATTCSVQYSGNAVLFEPPISGLPAGLLASPALL
KVDGGTVYVPIVNVGTMDVVLYARTIVGVVSKVDVVALPPEVAEVNMVAARVSAQSSPSVQEQIATLDLSKLPEVEQGKV
RALLLKYLPVFSSYDGDLGCTNLISHDIPLLDEIPVRQRFRRIPPSEYEVVKAHINQLLETQVIRESSSPYASPIVLVKK
KDGGLRMCVDYRRLNAKTRKDAFPLPRIEETLDSLAGACWFSTMDLASGYNQVPVTEKDKPKTAFCTPFGLFEWNRMAFG
LCNAPSTFQRLMERLFGDQQCQSLLLYLDDIIVFSSSIDEHLARMEVVLSRLQREGLKAKLSKCAFFQREVRYLGHVISS
EGVSTDPGKVEAVANWPCPTSVTELRSFLGFASYYRRFVEGFSKLAAPLHRLVAQLANPKQRKGNAHDFAASWSTECQSS
FEGLKIKLTSAPVLAYADFSLPFILEIDASQGGLGAVLSQEQQGKVRPIAYGSRSLRPTERNPSNYSSMKLEFLALKWSM
TEKFREYLLGQKCIVFTDNNPLSYLNSAKLGVMEHRWAAHLSAFDFEIKYRSGRSNRNADTLSRQNFSSTGEVQGLCPGV
AVPAVLQQVAPDGLVTQVNQVTAFPCPSGSDMGALQEADTVIGEVLVFWRRKLLPTSEERKQLSRLAVILLRQWGRLVEI
EGVLYRRVSRPDGGEEVLQVLLLAVMKTEVLTQLHQQHGHQGVERTSQLVRQRCYWPGMFADIARWCQECERCQCAKGTP
SAPSSFMGHLLASRPNEILALDFTLMEPSRSGLENVLVMTDIFTKYTLAIPTRDQRAETVAQVLVAEWFCKFGVPGRIHS
DQGRNFESTLIQQLCGLYGVVKSRTTPYHPAGNGQCERFNRTLHDLLRSLPPSKKSDWPLCLPQVLFAYNTTPHQSTGES
PYYLMFGQEPKLPIDFLLGRVKEPSAGSVHGWIVEQQDRLQVAFEGARERLGAAADRRKARHDLQVREAPLKEGQLVYLR
DHSVRGRCKIQDLWSSVVYQVLKAPTESGVVYTIAPVADLSKTKHVHRSLLKAQLGPNLLPSPPEPAMGDGMQPSDEECD
GDLLVLVPETPELRGRSRSQGSVPPVPRVVDEELEGRATGETVQPEVVPSNPVRAAEVVVRRTVRSTAGQHSNLHHLPRA
VGTGTVSSIATNPFGTFFRPWD
>Gypsy7_Dmoj_pol#LTR/Gypsy 1850-4934 via tfasty with DM176_pol, 1 frameshift. [Drosophila mojavensis]
MMTYNVFNLPIHDTDCLIQTSNGPLTITKKVNVLSNNLFKSNNEFLLHQFSPDYDLLIGRKLLSDAQAVIDYKSQTVNLY
NKKYKLINDIPITNQNHFVAQPILETYQHLNNPIRDNSKNQESINSSPYRLDHLNEEEKFNLISLLKQYQHIQFKEGDQL
SFSNQEKHVINTTHNSPLYTKPYSYPQAYEQEVEHQIQDMLDQGIIRPSNSPYCSPLWIVPKKQDASGKQKFRIVIDYRK
LNDVTINDRHPIPNMDEILGKLGKCNYFTTIDLAKGFHQLEMHTDSIKKTAFSTKNGHYEYLRMPFGLKNAPATFQRCMN
NVLRPLINKHCLVYLDDIIVYSTSLKEHLHSLQLVFEKLSEANLKLQLDKCEFLKQETSFLGHVITKDGIKPNPDKIKAI
LKYPIPTKTKEIKGFLGLTGYYRKFIPNFADIAKPMTTVLRKDAKIDTKNPEYIRAFEKLKQLISNDPILKIPDFKNKFI
LTTDASNVALGAVLSQDGHPISFISRTLNDHETNYSAIEKELLAIVWATKTFRHYLLGRHFEINSDHQPLCWLYKMKEPN
SKLTRWRVKLSEYDFDIKYIKGKENHIADALSRVKIEQTYFGEETQHSADEDNSNLICITEKPINTFKRQIIFSKGIPNI
TKQNYFKKLIIHITYDNMTKDKAEKYLIDYFCTKTSAMFIDSDADFEIIQNAHKEIINTSHTKILRSLIQLKNINSYAEF
KELILKTHEKLLHPGIQKTNKLFSETYYFPNSQLLTQNIVNECNICNLAKTEHRNTNMPMKITPRPEHCREKFVIDIYSS
EGKHYLSCIDIYSKFATLENIKAKDWIECKNALMRIFNQLGKPKLLKADRDGAFTSLALKKWLENEGVELQLNTTKTGIA
DIERLHKTINEKIRIINTLNDEENKLSKIETILYIYNHKTKHDTTGQTPAHIFLYAGQPKLNTQENKEKVINKINSDRQE
YEVDTRYRKGPLQKGKLENPFKANKNVEKIDPDHYQITNRNRITRYYKTQFKKLKKINQIQIPQVSTS
>Gypsy8_AG_pol#LTR/Gypsy 2044-5859 [Anopheles genus]
SHHKLYTERKCIQSGTQQGYAYTNSNQHTRQERRRGRGSFFRRRPKPIPTVVLMTGIKTNNFIKVKLNIANGKNTTLVID
SGAEVSLFKASSLKKQIQLKKNKELTLIGITTDTMKTKGYTQATIHFGDKNVEHTFFIIKDLPTQADGVLGMDFISKFQC
DILFSTWMLQFRNGNDIIEHPVDDSINGIIEIPPRSEVIRKLTLKPITEDSVIFSKEIKPGVFIGNTIISKTDPNIKLIN
TTESTAFINTGTIRPQIEPLKNYEIFLANNYNTPERTRIIQDKVHIEQVPEIAKRNLKNLIAEFSDIFCLENEPITTNNF
YKQPIELMDNNPSYIPNYKQIHSQADEINQQVDKMLKNDIIEHSVSAYNSPILLVPKKSIDGSKKWRLVVDFRQLNKKIL
PDKFPLPRIDTILDQLGRAKYFSTLDLMSGFHQIELEPASRRFTAFSTPTGHYQFTRMPFGLNISPNSFQRMMAIAMAGL
SPELAFVYIDDIIVTGCSAQHHISNLSKVFNKLRKCNLKLNPEKCCFFKTEVTYLGHKITDKGIYPDDSKYEIIEKFPVP
KNANDARRFVAFCNYYRKFVQNFAKIAKPINNLIKKDVKFDWTKECQEAFEKLKQSLLSPTILQYPDFTKQFIITTDASD
TACGAVLSQITDGNDLPVAFASKSFTPGEKNKPIIEKELTAIHWAINYFKPYIYGRKFIVKTDHRPLAYLFGMKNPTSKL
TRMRLDLEEFDFDVQFLAGKANVAADALSRVVITSDELKAQIPTNIMLATTNNIQNLKSTILMVHTRAMVKQKEAKKVTP
HKPIDTRSDQPTMWTTDTPSKTRKLLKIRTSISDNNITFEVCNSTYKKVLGKVNAKAEKNGSQALELALLNICKIANNYK
NKKLAWSLHDQIFTQYSHQTLKEIANRVIDKYEFILFTPPRWVETEHDRLRIIHDYHMTPSGGHVGQFRLYRKIRDTYTW
KNMRNDIKNFINKCEACLVNKVNRHTKEQTVITTTPNKPFNVISIDTVGPLTKTNNNYRYAITIQCDLTKYVVIIPIHNK
EANTIAKALVENFILTFGTFIELKSDQGLEYNNEILNKITEILQIKQTFSTAYHPQTIGALERNHRCLNEYLRSFVNEHH
DDWDDWIKFYEFVYNTTEHTDTGYTPYELIFGRKANLPQEIYQNKIEPVYNVEQYYNEMKFKLQKSREIAQKNLVSSKEN
RQNILNKNTNSLKLEIGDIVYLTNENRKKLDPVYIGPFTVTNIQEPNCTIIHKTTNKSSTVHKNRLIKSKE
>Gypsy7_DR#LTR/Gypsy 476-5449 [Danio rerio]
MANVNPSPSTSVDIDPPDIATPVWPPVQQRQFSSPSNIPTYHSTPTQLDPYGRTQVHFHTTTPGVTSTVQPDPMQLCTSA
STVESPPSTATQHALPGYLPTPGREIHQLTAHVQGNWDRVFDCLKRQDKAVKELTEKSSKSFSLHEAKLAKMESTHQQLL
NTLTAQRKDDTETADQLTKAVKVMVTQEIQRSESTLISEIRFMVEQAQLELQKDIQATKEHSDKNFERLSSDLNHCSTEI
NAIKNQLDNLQTEISDVIPPIKQVSDPPSSAPVSVSTQSSSSVTAPMPFQTPVIKSDHLKLTFPTFGRPSDDADPLLYVT
RCKDFLALHPLDDPDILATFRTVLYGTARDWWEVARSAISTWSEFETAFLSAFLSEDYEDELAERVRTRTQAEKESIRDF
AFTYRAMCKRWKPTLTESELVKMILKNIKPHLASQLRSRVHTVDELVKLGLQLEKDYVQQLHYVEHVTQPSPQRIAPNRV
EKPPVLCWRCKGLHPPGSCPHYSSSVQTTQSSSHPPPTGNKRYFQTQKHGGNPSNNAMSVTLPSKSLPKSTVTKSVVIPQ
QLIVPIYIGAWRGKAILDTGASYTLLHESLWKEIDPQASLHPWTLGPLYLANGEAEVPLGWTNFEIILHDKVFPTQAAIL
TPKALAYSVVLGLDFIYSSGLQINVVDQTYSFKSNPNEEYPFQPGHASVPVGRSQHLNKNAQTQHSSKTLSLLSSIPPPL
PFPVVSQLAPSSDDQALIEMAVAEAHLPLESKPQLLHLLQSNPKVCTLQLGRTTVLQHCIYTTHPVPVKQRPYRLTPGKQ
AIVEEQIEEMLKAGVIEQSCSPWASPVVLVPKKDNSLRFCVDYRKLNAMTESDAYPIPNITEILESLSGASTFSSLDLNC
GFWQVPMDDKSKLMTAFITSRGLYHFNVMPFGLKNAPATFQRLMEIVLRDLLGKICYVYIDDIVIYSPTLTQHLHDIQTI
LERLEKAGLTLNLKKCSFCLPEITFLGHVVSHQGVAADPKKVEVIHAYPVPQNLKDVQRFLGLAGWYHRFVPNFSRIAEP
LNNLKKKGRQFKWDSLCQQAFDNLKFCLTTPPILGHPDLNIPFTVYTDASDSGLGAVLTQRKEQGGEEVIAYASRTLTKA
EVNYSTTEKECLAVVWALDKWQHYLEPRMFTVVTDHSALQWVMNSTKPASRLMRWALRLQRYDFVIEYRKGRLNVAPDAL
SRMYSMPGCNLYTTEKDLPDFPVTPQTIWEEQHQDTDIMKIFQALAKNEQQEQAQYTVLEDKLYHITHLADETVHYKVVI
PSTLRPTVLEWYHDTPLSGHLGIYKTYKRIQDVAYWPGMWTDIKKYVKNCAKCQVTKWDNRKPAGKLQQVTTSRPNEMWG
VDIMGPMPKSGKQNEYLLVFVDYFSKWVELFPMRHATAQTIATILRQEMLTRWGVPDFILSDRGAQFVSSLFTELCGKWN
ITPKLTTAYHPQTNMTERVNRTLKSMIAGFVEDNHKTWDTYLPELRFALNSAIQESIGMTPAELHLGRKIHSPMDKLLHR
RDLSPTKPAYDMVHKITQLQRQAKENYTKAQKRQLRSYDKNRRDVFFRERERVWVRNFPISSAQHHFSAKLAPKWKGPYR
IIQQLGPVNYQVSLEDTGEDVRNVHVCNLKPCFPTAEELEAREKNCTKILPQQDQKRF
>Gypsy-10_ST#LTR/Gypsy 38-4516 via tfasty with ATGP3B, 4 frameshifts and 3 stopcodons. [Solanum tuberosum]
MVAREKNQDKSSEEMEGKLSQIQEQLQKLMEGMVNIIDRNVQTDKELMEIKQALGNVKQKEKEMDHNRAESFVDGDREHG
FCNAVGNFQNSNGKFLTRCSKLDFPRFSWSDLRAWLYKVDQFFAMDKVPYDQRVRVASIHLDGEAIAWHRSYLKSRNSVI
DPSWSEFVLAVDKRFGEEFEDSIEALKNLQQSEDVRTYQAEFDRLLNGVNLSNENTISCFLGGLKTKLNKAVRMQAPKTL
MQAYKLANLQEEVFDVHAKSWGIRNSKNQNGLLPTPSRFQGVQKPTFSSTIVKKPYEPNANRFSKVILTGRRLLTAAEMD
EKRTKRLCFLCDEKYMPGHVCKSKTQLYLVEVLEDGEVIMEEEVLEVDECMTISLQAFTGSTGYQTIRVTGYHEKKPLQV
LIDTGSTHNFIDELMARKLGCKALPIHEQSVSVADGRKVQTAAVCKNLKWLLQGTTFSSDLLLLPLGNVDIVLGVQWLNT
LGRILFDFRNRTIEFRASGRKHVLRGASSQIKTTKAQSLDKKSVDLVxVFMLTLMTDATFDVQCNSIQVTQGTDIHPTLI
VLMEQYKCLFNMPSTLPPHTGIFDHKIPLIDSATPVNKMPYRYPRMKKDIIEKLVQEMLDQGVIQPSSSPYASHVVLVRK
KDGSWRLCVDYRDLNKLTIKDKFPIPIIEDLLDELGGAEVFSKIDLRAGYHQLRMKETDSYKTAFKIHEGHYEFLVMPFG
LTNAPFSFQSLMNVVFKPFLRRSVLVFYDISVYNKDMSTHVNHLQAVFDLLKQHQLFAKGSKCAFGVPEVEYLSHFISAK
GVATDPKKISAVQAWSVPRNIKQLRGFLGITGYYRRFILNFGSIPKPLTELLKKDKFVWNEGATTAFHVLKNALVTAPVL
ALPDYDKPFIIETDASGSGIGVVLMQQGYPIAYISKSLAPRHQAMCVYDRELLAIIFAVTKWSHYLLGRHFIVRTDQKAL
KHNVEQSIHTDFQVVGISELMAFDFTIEFKKGTDNKVVDALSRNQSVELLAVSLLTPNDTLLERISLAWTSDAELQAVIL
KLQAKPYKLYTWIGSQLRRKGRLVVGSDLELRQTIIQLWHSTPQGGHAGMDATIKRLQSLFYWKSLAVDIRNFIQKCDIC
QRHKYDTSAYHGLLQPLPVPDGVWVDISLDFIKGLPKSKGKDVILVVLDRFSKSGHFIAIAHPYTVEYVAQCFLDNVFRL
HGMPASIVSDRDPIFLSSFWQELFTLHGVLLHKSTAYHPQTDGQTEVLNRTLETYLRCFCSDSPHIWATQLPLAEWWYNT
TYHSTLKCTPSEVLYGKKPPIHLPYLAGESSNDMVDRSLEAREAVIALLKFHLARAxQSMRDKANKHRSDRQFMEGDWVY
LKLQPYRHISVASRPFNKLAAKYFGSLLGYFLELVQLAYxVCFYLLMSLFILCFHVSQLKKCYEVPTIINHPPILHLSSP
YCPSPESILEIRMVKKGNKVVCQVLVQWSGLDASQATWEFLYELQHMFPAFHP
>Gypsy-10_Gav#LTR/Gypsy 58-4212[Crocodylidae]
MEHQPGLTGTESLQQAMNLMAQVLQQQQQQAMRQSSIQEHLLQQQVWAHRGPWDFRVPKMSKEDDPEAFLETFERAAIAA
GIEKSKWAGHLGVLLIGQAQAAYRAMTRMDAQDYDKVKAEILRRLDITPERHRQAFRGKKSREAKAPRVLWQSLTDLMNK
WLRPEAASKEEICDQILLEQFIADLDEDTQRWVRCHCPTSAREALQLAEHFDTAQGDMRRDRGMKGQDRNMKKDQESKGS
RRGSPPGLVCFLCGQKGHIARNCPRGLRSRPGKDLEAPDRRARSEEAPESELMDCGVGNSLTATVQPLPELLVWVEGRPV
PAVVDTGCAQSLVRPSLIDWKQAPRCAGVQMVCLHKQKSYFERRLLDIQVNGIHRRIPVGLDEGILYPMILGRDWPEIFE
VLASLHRHESIREGLAGTGLEAPDDLEIEALSNSSRFREAQERDEELQTFWETVQSRTDQQVTSPAQNPQVPRVEIRNGL
LYRIKRGRVEGEELTQLVIPRPYREPLLRLAHRNPLGGHLGKNKTEARLARWCFWPHLYEDVEEYCKICELCQKVSTYKP
PKVPLRPMPVIREPFARVALDVVGPLPRSVVGHQFILVLIDYATRFPEAIPLRAVTGPKVAEELMKWVAKFGIPREIVTD
QGANFMSLVLGAMCKVLQICHLKTAVYHPQTNGLVERFNGTLKGMLRRCAQIEPKKWHLMVPPLLFAVRDAPQASLGYSP
FELTFGHRPRSLLDVVREGWEADPNPGRGASEHVRDLQERLRVVREVAHDNLEQAQSKQKERYDTQTKERELKIGQKVLV
LLPSSTSKFLTCWQGPFTVVRRVGPVDYEILRPGAKREKQIYHINLLKEWHEPEGLLISPEPESDEFGIQVRDNPEGPKD
GDQVPVGRQLKTRQLQQLHGLVKEFKDVFTDRPGKAAGVEHKIITQEGQVAREKWRRIPYHRYQPIKEELEKMLEQGIIT
PSRSPWRSPLVAVTKPDGSLRLCVDFRKLNALTQFDAFPMPQVSELVERIGQAKFISTLDLSKGYWQIPLRKEDQPKTAF
GTPWGLFEFKRMPFGLNGAAATFQRLIDWVLAPHQGYASAYIDDIVIYTETWEQHLRALRAILLELRQVGLTANPKKCAL
GKRETKYLGFLVGQGRVRPLADKVKAIKDYAAPVTKKQMRAFLGLASYYRRFIPRFAEIANPLVETTKGRRTYSIEWNAE
RQKAFEELKKALCQEVILHTPNFALPFTLQTDASAFALGAVLSQEVDGVERPIAYASRKLNEHEKRYSTIERECLAIRWG
VDYFRYYLLGREFKLVTDHAPLRWLNTAKTDNARIMRWALALQPFRFHVAYRPGKSNTVADFLSRCGEENPNSRPGEQNN
GDREGAEQDGFRQEGEAPSSVLRGG
>Gypsy-12_DBp_pol#LTR/Gypsy 803-3937  [Drosophila bipectinata]
MSPTMLFFIRTKKLKQSSDSADKFEEDHNTIARLAINDNFSKTQFLIDTGADISVMPPCKNAKTMLTPKLLFAANGTKIQ
TYGEKRIALSLGLRRNFVWTFVIADVNCAIIGSDFLQHFDLLVDMKRRKLIDRATLLESKCHAPQRKINAVLSYDTSNQY
ATLLHEYRDLATINSNRLPATSEVTHFISTNGPPTHARARRLAPDKLKAAQSEFSYLIEKGICRPSNSNWSSPLHLVKKA
NGEWRPCGDYRALNNVTVPDRYPIPYILDVTSILYGKKIFSKIDLQKAYHQIPVEPQDIPKTAIITPFGLFEFLFMTFGL
RNAAQTFQRHINDVIQGLDFVFAYIDDILIASESEAQHETHLRTILDRLRKAHLTVNFEKCQFGKTQLTFLGHDISQHGL
KPSEAKVEAIRHFKKPLIAKDLKKFLGMINFYRPFIPRAAENQHILQTLIQGNKKNDKTPILWSTEADYAFTACKNELAN
ATLLNYMAPNSQLTLTTDASDDAMGAVVHQIINGQTQPLGFFSRKFTSTQKKYSTYDRELTAIYQAILHFKYALEGRNFV
IFTDHKPLMYAFSQNSEKASPRRARQLDFISQFSTDIRHISGEENNVADLLSRIDAIKHINFDEMALEQENDAELQSLLK
SDAEKPISLTKLSLSGSNKQLYCHVANNHTRPFVPKCLRQTVVEALHSLSHPGVKATNKLVGKHYVWPRMAKDVAKIVRS
CIPCQKAKIQRHTKSPLGEYTASDARFEHINIDIVGPLPSSNGYRYCLTCIDRFSRWPAAIPLVDITAQSVANALISGWF
AQYGIPLHITTDLGRQFESTLFQELSKICGFKHLRTTAYHPQANGMIERWHRTLKAALKCVDPINWSSSLHLILLGLRTT
IKSDIGLSPAEMVYGTTLRVPGGFFAPSTQKHTESEFTEALQKTMSQLPTTKPVHHHTPQEFVHPDLNHCTHVFVRVDRV
KTPLXANYEGPFEVVTKHDKYFTLKGHTKDNKVSIDRLKPAYIFKDVPPPTQEQTTAPTAQTPEKVSRSGRQIRFPAKYL
SQLEL
>Gypsy-13_DWil_gag#LTR/Gypsy 200-979  [Drosophila willistoni]
ARSPQRCQGPFRRRNTPRGVGYQPRQDALPRAASTTYGAAWARSPPVPQFNPGLLPLFDETGSWGEFERLVDKVANYYQW
AEDEKCLAVVLNLRGRASTFYGTFPTQPTLTYSAVCAAMRQRFMLDCRSPRESLPDFALELERLAQCAFSGMPGHMYDQI
LVQQFIDGMRETPLQGLVISSRPIQLQEALDVAMRVQAQFGRTHGNPVLHSQVVESGDIHTPKRRRRRRGRSQLTKEAPL
TTSHPSENSSMPMSRGEHWQ
>Gypsy-12_HM_pol#LTR/Gypsy 810-3725    [Hydra magnipapillata]
LDYSEHKTNLKNISASISPLTKSTIGMLVNGSFVNALIDSGSTDSFIHPRLVQKLNLTVHRQNQKQVSMASSSLSSTVCG
VVFVNISIKNEHYKLVKLNILNELCMDVILGLDFQKQHKAVTLKFEGKRPPLLICGLSKLNVSPPSLFGNLSPNCKPIAS
KSRRYSKEDQLFIEMEVQRMLKEDIIEHSNSPWRAQVVVTKGERSKKRLVIDYSQTINKYTQLDAYPLPRIDDLVNKIAQ
YKIFSTVDLKSAYHQIPITKNDRKFTAFEANGRLFQFKRMPFGIENGVACFQRTINEFIEKEGLLDTYAYLDNVTICGKT
QEEHDLNLEKFLKSAKNINLTYNHDKCSFSQDKICILGYLIEEGKLKPDPSRLQPMKEMPPPHDAKSMKRIIGLFSYYSK
WIPNFSDKIASLTKNTKYPLDHQCVNDFNQLKQDIANAVTDYVDENVPFEVETDASDIAIAAVLNQNGRPVAFFSRLLQK
SELKHPSIEKEACAIIEAVRHWKHYLTGRHFKLITDQQPVSYIFEKQHKSKIKNDKIYRWKIELSCYNYDIVYREGKLNI
PADTFSRIHCSAINTNNLIQLHQSLCHPGVTRFYAFIKNRNLPFSIDDVKRITNQCKLCCECKPRYYKPLKSNLIKATQP
LERLNLDFKGPLPSETNNKYFLTIIDEYSRFPFAIPCPDISAQTVIKCLSQVFSIFGLPSYIHSDRGSAFISKELKQYLL
EKGIATSHTTAYNPQGNGQAEKYNGTIMKSIEIATRQHNLPIKAWEKVLPDVLHSIRSLVNTKTMETPHERMFKHLRKTA
SGCTLPSWLSHPGPILMKRHLRNNKYEPLVDEVQLIDANPQYAHIKYPDGRETTVSLRHLAPTSSAPIIDQTNHIEPSPE
NAFNNIKPSPENAFNKPSYPYKPLTPEKYGLTNTNPENFPNQPPLYQPPLAENLVNDACPINPLLLITPGKDTRRSSRAI
RRPLRLIEEDT
>Gypsy-10_DTa_gag#LTR/Gypsy 2616-4073  [Drosophila takahashii]
MGLDRSPSKGSLEATKPVCPICKAEIKTTSEHFETTCHHGFHKKCIDVHFKKSDLCPVCKVSCRPVVEKGLQTRSQSKGR
QQEVADNTPGPSGSAQSSNNSVTDQATAINTVTMVSMERRLFSLLSEKITDLIQNTVEESVRRLITTPPNSAVGGEERPA
TPPPVDGVGSEPISGVEQIQNRHRLMPNIGSPGSHRSNMSDLLTRPDKVVHILNGWKIKYSGSGVSIDNFIYRVEALTHQ
TLDGNFSVLCRNASVLFEGKANEFYWRYHKSVTEVRWDLLCSALRMQFRQKRDDIDIEELIRNRKQKPSETFDSFYDSVN
ILVDQLELPWSSRKLVRVLKNNLRPEIRHELLNVDISTVSELRETCRRREAFLDDVKRAHGYSKGNPFRRDISELIPESD
SHKDSESENDLEVDAFSLKCWNCRKDGHIYQDCLADKRLFCYGCGADNTYKSNCVKCAKNSKSGASKLPYKPKTSNTYRN
QSTMTD
>Gypsy-8_ST#LTR/Gypsy 399-5726 via tfasty with Athila6B_gagpol, 7 frameshifts and 8 stopcodons. [Solanum tuberosum]
MMYDEDNADLDGAGATRAIVLLALPPGVKFTITSTMIQLLNLKGMYxGAAGDDANQHLMNFVAICKSQEIPGVNQTAMRL
RLFPFSYGEATNWLNEMPDDSIRTWNELKEAFLERxFPESKELQMKDxISTHKQLPGKAMHDTWWRFSxKLKKFPNHDLT
ERHLKxAFYRSLNYVTKHVVDAVCGGSFMRKPFAESMQLLDEVSKNNRAWYTRDAEVGELGYTFELSAEQRKREEERDQD
MTYMRTQIDLLTKHIVAKSEKVNVVGQQHRYEDQDLDIDEEAKYLGNQGGFQNYNSGNQGYNSGNAGRSYARDGQYERPT
NRDQGNWKNREGYRNDRSCVYIPPGNTDQVSGSSNGSKLEDMMAKVLQKVESTDAGVKEMRGDFSSMSQLVDSHTTSIKQ
IEQQLGQLSASMNRRKNGSLPSDTIQNPKKEGHCMAIATRSGKVLSDPISAGTKYEQVLEQASRKEDENIxVDDQGEAQQ
SQPKAQHSRGKEKEVQEYLSLQQIPRPPPPFPQRLKKKAEDGNFTKFITMLKQLSVNIPLVEALEQMPGYAKFMKDLVTK
KRAISHDFPNDVHYCSAIATRSLVQKKEDPGAFTIPCTIGSIKFAKALCDLGASINLMPLAVYKKLGLGVPKPTSMRLMI
ADRSVNRPVGILCDVLVKVDTFIFPADFVILDCEVDFEVPIILGRPYLATGRALVYVERGELKFRLNTDEVRFNICRSMK
QPRAMNVISAIEMVIDEDMRVPIEERMVVETLAAVLMNFDVDFRSDYVETVNALQGMGAHSYAPKKLDLDLENRPSPPAK
PSIEEPPVLELKQLPNHLRYVFLGLNNTLPVILAADLNEEQVQEVIKVLKIYKRAIGWDLADIIGIPPGICTHTIQLEED
CSPSIEHQQRLNPRMQEVVKKEIIKWLDAGVVYPISDSHWVSPVQCVPKKGGMTVVANAKNELVPQSLVTGWRVCMDYKK
LNKWTLRDHFPMPFMDQMLDRLAGKGWYCFLDGYSGYNxISIAPEDQEKTTFTCPYGTFAFKRMPFGLCNTPATFQRCMM
SIFSDMVEDTLEVFMDDFSVVGDAFDDYLLNLSRALQICEQANLVLNxEKCHFMVKEGTVLGHKLLQKGIEVGKAKIEVI
EKLPPPICVKGVRSFLGHAGFYRRFIKDFSKIAHPMCKLLEKEVKFVFDETCLKAFECLKEKLISAPVIIGPDWAEPFEV
MCDASGTALGVVLGQKRNKDVHPIYYASKSLNGAQRNYTVTEQELLAVVYAFEKFRAYLLGTKVIIHTDHVALRYLIAKK
DAKPRLIRWVLLLQEFDFEVKDRRGCENQVADHLSRLEAAKKEELELKIDDKFLDExVLAATLDLIPWFTDYANFLVSDL
MPEGLTYQRRKKFLHDVDKYFWDEPYLYRVCADNIIRRCAPEADMLHILEASHSSPVGGHHGGARTAHKILQCEYYWPTI
HQDAVDIVRSYDVCQRQGAISQRHELPMTPILEVELFDVWGIDFMGPFVSSYGKKYILVAVDYVSKWVEAVALPENDGKS
VAGFLKKNIFSRFGTPRAIISDGGSHFCNKVFSALLTKYGVKQHKVAAPYRPQMSGQVEVSNREIKTILAKTVNANWTDW
ARKLDDALWAYRAAFKTPIGMSPFNWCFGKACHLPVELEHRALSALKKLNLNWSEIANLRLDQINEMDEFRLRAYERPAL
YKERMKLYHDKYIEKKSFTPGDLVLLFNSRLHLFPGELKSKWSGPFKVTQVFQSGAIELENEKGERFKANGQRIKAYLGA
PEDVKIMEECKLDEV
>Gypsy-8_DVir#LTR/Gypsy 106-4068  [Drosophila virilis]
MQMSNSASSTKKSISLPKFNPDIADADADAWCKTVDIILDDNPIEGSTLVMTLSGSLEGSASPWLSQICYTGMNWQNFKE
LFLQRFVGMETSAATLMNIFNGRPNDGECLSVYANRLVTSLLSKWKTANMEEIAVSVVLAHTSKIDKSLQRMLYTTNIKS
QDEMQQHLKAYAYGRSNGGLQPNIPMEPDRKRSKTYGIKCHHCGNLGHKMVECRKRKYEEGNVSKNSALPKVRSAVTCFK
CGDAGHIASSCTKGVSTSGVGSHDKRINICCVSEPKGILRQSGELVPFCFDSGAECTLIRESCAEKFSGKRINNLIVLRG
IGENPVYSTMQILATVKIDQYSLEILFHVIMDKFLKYDVLIGRDILGLGFGVSIEADKFEMYKTKTVDVLIKVPDISYVE
HLNNDRALSNTDKNRLLELLQNYADKFIEGIPQTRVTTGELEIRLLDPNKTVQRRPYRLSIEEKEVVRNKVKELLDANVI
RPSCSPFASPMLMVRKKNGTDRLCVDYRELNANTVADKYPLPLISDQINRLSEGEYFSSLDMASGFYQVPIHPDSIERTA
FVTPEGQYEFLAMPFGLKNASSIFQRAIVRALGDLAQTYAIVYIDDVLILAKTKEEALERLQTVLENLSRAGFSFNITKC
SFLKTSIEYLGYLVEAGQIRPNPRKIQALAELPSPQSVTQVRQFIGLASYFRQFVPKFSEQMKALYNLTSKNNKFVWKPE
YEEIRQKIVSILTNDSVLTIFDPLKPIELHTDASSIGYGAILMHKIENRPRVIEYYSKCTTMAEAKYHSYELETLAVYNA
VRHFRHYLHGQKFIVHTDCNSLKASIKKINLTPRVHRWWAYLQSFDFSIEYRKGERMLHADFFSRNPLPTDYKSSAKTVE
MHINLAEITDDWLLAEQQRDSDIASITLKLRNHKMGEAISASYELRAGVSYRRIQRNGSTKCLPVIPRAFRWSVINNVHE
AIMHLGWKKTLDKMYANYWFEKMSKYVKKFVENCITCRVSKPPSGKPQIEMHPIPKDDIPWHTVHIDITGKLSGKNDLKE
YIIVQVDAFTKFVHLQHTLNINTENCIKAVKETVALFGVPARIIADQGRCFASTRFREFCSSQKIGLHLIATGASRANGQ
VERVMSTLKSMLTAVESSQRSWQDALKDIQLAINCTTNRVTKYSPLELLIGKEARPLGMITISDEKTIDKDLIRAQAKDN
MVNNAKYDKARFDKNKAKIVKYKLGDHVLLKREERNQTKLDPKFKGPFEIIEILDGDRYLLKSLTSKRTFKYAHEYLRAF
PSNNVSEELIDLRDDECDNVEDIAQDTVALRESAVGLIHDG
>Gypsy-9_DAn_gag#LTR/Gypsy 961-2442  [Drosophila ananassae]
MGLDRSPQKEGHPPSSECKLCNSEIRAADSYKTKCQHVFHKACFRTHLAVKRTCPICESICIDQRISQPPTSAIQTRQRT
RLETISRSGSELDLTASTSQERSRQDQITVCNTPVEEMSQITTEISAAVKAMQNELLTQLTERMANLIQTNVEVQMSNID
QQRATVNPNTSRNSSLEQVLGINMPPTEQYSVPQRPSSSRSLNSDLAQRPDKVGHILSNWKLRFSGSSDTIGVDSFIYRV
EALTHQTLEGNFSLLCGNANMLFEGKASDFFWRHHKAVGVVRWQELCAALRKQFRDSRTDVDIRQMIRDRKQRDKESFES
FYDSILKLTDRLSQPISEETLVEIVRRNLRPEIQHEILNLSFESMENLRDTVRKRELFIEEMRKHHGYQKPLPLRKPISE
LCEEVEADDAEEFGEEELQEEISAFALVCWNCRKEGHRYQDCASKRKIFCYGCGLPNAYKPSCERCTKNSRRNTATPRSK
ASVPNRQTGLEDQQ
>Gypsy-10_Crp#LTR/Gypsy 86-4250 via tfasty with GypsyDR1, 2 frameshifts. Related Gypsy-13_AMi-I has too many errors to translate.[Crocodylidae]
MEHQTXLTGTESLQQAMSLMAQVLQQQQQQQALRQTAIQEHLLQQQVWAQRAPWDIRMPKMTKEDDPEAFLEIFERTAIA
SGLEKARWAGQLGVLLIGQAQAAYRAMTRVDAQDYDKVKGEILQRLNITPERHRQAFRGRKPKEEKVPRLLWQSLVDLMN
KWLKPEVNSKEEICDQILLEQFIADLEEDTQRWVRCHCPKSSREALQLAEHFDMAQGEMRRDRGTRGQEANLKREKENKG
NKKGSPPGLVCFTWRRRGHIARNCPRGLRTIPGPRGNVTESTDHRTGPGEAQEAELMDCGVGDSSTDMVQPLPEVTVWVE
GRPVQAVVDTGCAQSLVRPSLIAWKQAPRCAGVQMVCLHRQKTYYERRLLNVQVNGVSRRIPVGLEEKILYPMILGRDWP
EIFEVLASLHNSEGPREGLVGAGPEMEEELEIEALASSSQFREAQESDEELRAFRETEQARIDQQVTLPEQNNPVPRCEI
RNGLLYRIKRGKAEGEEVVQLVIPRPYREPLLRLAHRNPLGGHLGKNKTEARLARWCFWPHMYEEVEGFCQVCEICQKVS
TYKPPKVPLQPMPVVREPFARVALDVVGPLPRSVAGHQFVLVLIDYATRFPEAIPLRAVTGPRVAEELMKWVAKFGIPRE
IITDQGSNFMSLVLGSMCKVLQIRHLRTAVYHPQTNGLVERFNGTLKGMLRRCAQVEPKKWNLMVPPLLFAIRDAPQASL
GYSPFELTFGHRPRSLLDVVREGWEADPNTGRGASEYVRDLKERLQLVREVAQENLKQAQSKQKERYDVHAKERELKVGQ
KVLVLLPSSTSKFLTCWQGPFTVLRRVGPVDYEVLRSGAKREKQVYHINLLKEWHEPEGLLISPDPEPEEFGRQVTDNPG
DPRDGDRVPVGRQLEIGQLKQLQGLIKEFGDVFTDRPGKAAGVEHKIVTKEGQVVREKWRRIPYHRYQPIKEELEKMLAQ
GIITPSRSPWRSPLVAVTKPDGSLRLCVDFRKLNALTQFDAFPMPQVSELVERIGQARFISTLDLSKGYWQVPLRREDQP
KTAFGTPWGLFEFKRMPFGLNGAAATFQRLIDWVLAPHQGYASAYIDDIVIYTESWEQHLRALRAILLELRQAGLMANPK
KCALGKRETKYLGFLVGQGRVRPLADKVKAIREYAAPTTKKQMRAFLGLASYYRRFIPKFAEIANPLVETIKGRKSYGID
WNADRQRAFEDLKQALCQEVILHTPNFALPFTLQTDASAFALGAVLSQDIDGVERPIAYASRKLNEHEKRYSTVERECLA
IRWGVDYFRYYLLGREFKLITDHAPLRWLNTAKTDNARIMRWALALQPFRFYVAYRPGKANTVADFLSRCDEESPNAGPR
EKEEXEGXKANZNIVRQEGEAPCGVLRGG
>Gypsy-9_DMoj_gag#LTR/Gypsy 838-2067  [Drosophila mojavensis]
MVRAWVYNLKKDEVLRYGDEFGVSLSGTLDVMRRQFGEWVARNEGSIPYSLRIAELERLHGRRASLRDEATTAVTEDDLE
SELAHVARLCVPSTSAAARLQDTRQGEMRATSTPQPEIRPRGLGSTAQEYPKVAKQVREWSFRFDGTTKPLEFLEQVEWS
ADTYGLDLDMIPRAMPELLKGMALKWYVANNRHWTAWATFVRSFQEFFLPRGYLEKLEDDVKRRRQMVDESFKVYMVEMQ
TLMRPLRYGADREMKLIYNNSLPDLRAYARPYQFHSLVELMHLADEFEELERDRERLRQQPRPGRSRLMAMDDAGGDVEY
RRMEDEAKPSPAPRTGATGARTHIPNPARACRVCGQEGHRAFTCRNKALDFCWQCGRIGVRTFACCQSGNEKRHPPSRGE
REQQSGAPRH
>Gypsy-14_DR_gag#LTR/Gypsy 100-1818 [Danio rerio]
MDVVMQEGIKIPNAIIISGETETADDEEFLKILQKHGSIVRSVKIQDPESEFNQDVIIEFDSGSALQSLEPLLPYTYQLT
SDPNITYLVRSLSSVYTQQLGGSATKSYLKGLKEIAKLSGANFEAMLSEMLTEMSAVVLPASSVSEAPDKPPITPSGQEP
ISGKTSPVMAQPSNEGNQEMHQTAAHVADSSVLTSPTILNPPEVQRLVVEHVVRSGEGVAQAHIPMRLRLFSGRKPRPAN
ETDYDTWRSSVDLVLKDPAISDLHGSRKILDSLLPPAADVIKQLSADAAPSAYLQLLDSAFGTVEDGDELFAKFMNTLQD
AGEKPSAYLYRLQAALNIAIKRGGVLASEADRHLLKQFCRGCWDDGLIADLRLAQKRDDPPTFAQLLLMLRTEEDKHTAK
TIRMKQHLGSSKQRALMNTQRIWVCDEPKQSTDCNVLSLATEAKELKKQIATLQSQLAKLATKSEAPKKLASQTVDRKAS
FKDKKSTKPSVESTMPMHYKQTDKPRPWYCFQCGEDGHIASSCDSEPNPALVAEKRKLLREKQSQWESQNNMAKAALNQS
QFLLRDSQGLKH
>Gypsy-18_Crp#LTR/Gypsy 58-4065[Crocodylidae]
MELPTGTDVAQQTLHLIAQLLQQHQQTALRQVNLQEHLLQQQQARGGLYSGEMNIPRMNKEDDVEAFLETFERAALAAGV
DRTKWASRLGVLLIGPAQAAYRALTRAEAGDYDRVKAEILQRLEITPEKHRQAFRGVKAKGERTPKMLWHGLKDEMTKWL
RPTAATKEEICDQVLLEQFLADLDEDTQHWVRCHGPTTSLQALQLAEQYTAAQAGRRPSRGKPRAEGSPRKGKGGKGEKI
PESKVISCFRCGGKGHLARSCPTEAEYPTSKGAPLPRGNSRERESIREEPMECGVGGREDAPPRPLPRVKAWVGQRPLMA
VVDTGCAQTLVRPSLVEWRRAPRCAGIHLVCLHNQRAYFERRILEVRLQGVSRRLPVGLSEDILHPMIVGRDWPEIYEVL
ATLRPRKESTEGLAGEETEQPWPGELEGLANGYQFREAQEEDAELRPFREEALRPHRQPVSPTADRGQGPRVELRQGLLY
RIKPDPQTGREVEQLLIPRRYRTPLLRLAHGNPMGGHLGKGKTEARLTRWCFWPHLYEDVERFCKGCRDCQLVSPHKPPR
APLQLMPIIQEPFTRVALDVVGPLPRSTAGYRFLLVLIDYATRFPEAVPLRAVTGSKVAEELMKWVSRFGIPKEIVTDQG
TNFMSAVMTAMCRVLHVTHLRTTIYHPQTNGLVERFNATLKGMLRRCAQEDPARWDLLVPPLLFAVRDAPQASTGYSPFR
LVFGHQPRSLLDIVRESWETSARGGRQVAEYAQEXQDRLHKAQRAAQDNLTQAQRQQKDRYDQGTRERELQPGQKVLVML
PSSHSKFEARWQGPARVIRRVGPVNYEVQREGRQRASQILHINLLKEWQEPQGLLLEMDRESVDGEYQEXEAGSKTLEEG
LPGEGASLSPHQKKELQRLIAEFGDVFTETPGKARGVEHAILTPRGQVAREKWRRIPFFRRQPIREELNRMLAQGIITPS
RSPWRSPLVAVTKPDGSLRLCVDFRKVNAITQFDAFPMPQVNELVERIGQANFISTLDLAKGYWQIPLRKEDQPKTAFGT
PWGLYEFKRMPFGLNGAAATFQRLIDWVLAPHQEYAAAYIDDIVVYTKTWEQHLRALRKVLQELRGKGLTANPKKCALGR
SETKYLGFQVGKGQVRPLRDKVAALRDYEAPVTKKQMRAFLGLASYYRRFIPRFAELANPLVDTTKGREPPRVNWTPERR
KAFEELRRALCQGVVLHTPDFNAPFILQTDASAYALGAVLSQEVEGAERPVAFASRRLNEHEQRYSTIERECLAIRWGID
YFRYYLLGREFRLITDHAPLRWLNSAKTENARIMRWALALQPYQFQIGYKPGRSNT
>Gypsy-16_NVi#LTR/Gypsy 1206-2477 [Nasonia vitripennis]
MAKKVEKVVENWCLGIDEEEMDDALESMQLKPDGKRLDRVARLNRWLLGEYTESDFRESLDASTVMARVKREELRKSFID
ATAEQVSTRSIYTGDYDAEQPHPLKLLQQEIEANEVVVTPAIEMNYGQPAQGLGQPTGPNLQLLNAMTMRDAFAEMPVTE
ESEQAQAPVSTPEDQARLTAQEAQGRDQNRIVTIEVPTGNLVTTVTTTTTTTTTTTTTTTPTTTASEGKGEYVLQNGKFR
SVKVTAPRAVMGAAAVTGGLDTRSQQSAATTSNRPLNRGYGEDERCSAQYAQSHEVSAQNSVAQNDLLSQSIAENTATMR
ALMCKMEAMMSQWPTNIASSTRVEPPASESNPQNSRRAGHVNFQDTYSINHMNHSSFREDAGAVAGGASNSWIPANPLYS
QPPVVARGGGGCECDERAYASAE
>Gypsy-19_Crp#LTR/Gypsy 101-4196 via tfasty with Gypsy-6_Gav, 5 frameshifts. [Crocodylidae]
MEHQANLSGTETWQQVMSLLVQVLQQQQQQAMRQTTIQEHFLQQQMWAPKGAGECRMPKMTPEDDPEAFLEIFERAALAA
GVDRAKWAGQLGTLLIGQAQAAYREMSRADALDYDKVKVEILRRLEITPEKHRRAFREKKAGEVKSPRMLWQYLTDALNK
WLRPESSSKERMFDQILLEQFVNDLEEDTQNWVRCHCPTTSREALQLADQFEVAQGDRRRTRNAKGAGSPAGRSTESKGG
RKVSLPNLTCFACGKRGHMARNCPQAVQAGAPTEPGVTAVRAGHGASPGIEPMECGIGSRDRSYIQPLPEVQAWVEGSPV
QAVIDTGCAQSLVRPSLINWEQAPRCSGVSMICLHRQKSYVDRRLLTVRVQGIQRDLPVGLKEEILYPMILGRDWPEIFD
LVATHPGVSREGLVGARDGAPRDLALEDLAQAGQFRAAQEADPELRPFWETEGPDADPQVRPPERAETLPRVEVRNGLLY
RIRRGGAEGEEVTQLVIPRAYREQLLWLAHKNPLGGHLGKNKTEARLTRWCFWPHLYEEVERYCRTCEECQRVSTRKPPR
VPLQPMPIVREPFSRIALDVVGPLPRGIAGHQYILVLIDYATRFPDAIPLRTVTAAKIAEELMRWVSKFGIPREIVTDQG
SNFMSAVLGALCSVLQIRHLRTAVYHPQTNGLVERFNGTLKGMLRKCAQTEPRKWSLMIPPLLFAVRDAPQASMGYSPFE
LTFGHRPRSLLDIMREGWEAGPSPGRRADEYVRDLREQLRTVREIAQTNLGKAQAKQKENYDGSAQERELRVGQKVLVML
PDSNSKFLTQWQGPFVIARRVGPVDYEVIRPGAKRGRQIYHVNLLKEWHESEGLLLSPDPESEGWERRPGSPPGQETVPL
GEQLERAQRQQLEGLVREFQDVFSDQPGKASGVEHKIVTKGGQIAREKWRRIPHYKCQPIKKELEQMLKQGVITPSRSPW
RSPLVPVEKPDGTLRLCVDFRKLNALTQFDAFPMPHVNELVERIGQAKFISTLDLSKGYWQIPVRQEDQQKTAFGTPWGL
FEFKRMPFGLNGAAATFQRLMDWVLAPHQGYAAAYIDDIVIFTETWEQHLQALRAVLQELRQVGLTANPRKCALGRQETK
YLGFLVGQGQVRPLVDKIAAIKKYNPPLTKRQMRAFLGLMSYYRRFIPKFAEIAGPLVETTKGQRMGKVEWTEERRRAFE
ELKEALSQEVVLHTPNFSAPFTLQTDASAYALGAVLSQEVDGVERPVAYASRKLNDTEKRYSTIERECLAIRWGVGYFRY
YLLGREFKLVTDHAPLRWLHTAKTDNARIMRWALALQPFRFQLAYKPGKLNVVADFLSRCQEEGQGETRERRQVGRTPGS
VLRGG
>Gypsy-20_NV#LTR/Gypsy 74-4120 [Nematostella vectensis]
MAVCLSGLPTPKAFDCIGEPATLEQRWTIWKSEFELYCTASGIKDSKQQRAILLHLAGAGIREIFHAFTAEQQGEDYKTA
MDSLTQHFKLKKNVPMARQAFLTAVPKPGERIHQFAIRLQTLCEHCEYNDQKDSQIRDRILTFILDKPLKAKLFREEGLT
LSKLLEIVNTYHDKEALVLVPDQGGVNQLRVQQKPDSAGPKFDGRCHRCNKQGHKAADCRCSKNHQCEKCGKIGHFKVCC
KSKQTSGKAKSASGPKSKGRKPSHVRQVEAVDVQETDSEEEEDVFNVFCTHTESPPGTMEISIGGVIQNVIIDSGASCNL
MSERTFNDLSKGDIVLKPSSKQIFAYSSSDALNLKGSCMLNVHVPETNVDKRAKFFIVSGKASTLLGRELSEALGILKVG
VQVNSCSSDFSAINTQLNSKAALKAKFPNVFHGLGKLKGFKLKLHIDQNIKPVAQPLRRIPFSRRQKVADKLEELEKLGV
VEKVNSPTSWINPLVAVEKPNGDVRICLDMRQANQAILRERHPVPTMQETLQEISDAKIFTKLDLNMAFHQIELSPESRD
ITTFAAPTGLYRYCRLLFGVNMATEKFQNLIWQVLKDCPGAFNMHDDILIVGRNQKEHDENLERAVQKLQDSGLTLNYEK
CVVGASSMDFMGDTISADGLKLSDKRVEAIVEAPAPTNQSEVRSFLGSAQFCAKFIPQFATISAPLWDLTSKNAKWKWGA
KEAESFAQIKHLLTCAPVMSYFTQGAQTRIITDASPVGLGAILEQRQPGDGQFRPVYYASRKLSKVEQRYSQFEREALAV
KWACEKFHMFLYGTHFEILTDHKPLISVLGPKSKPPSARIERWLLYLQQFSYVVRHISGKENSADALSRLPVGPVQTADS
KATSEYVFSTAKAAVPVAMTPKHVEVVSEKDPTLILVREAIRSGDFTRLTGTLYKAVSKELWIAGQLVMRGNRIVLPESL
WKQAIILAHEGHQGMVRTKSRLRSKLWWPQMDAQAEQFIKACYPCQLVGPRGKPEPVRSTELPEEPWEDLATDLTEIPGG
NHLLVVVDNYSRWPEVVLLKKTDAPHVITALEGIFRTHGIPYTVRSDNGPPFASKEFENFLEFLGIEHKKGIPYWPQSNG
EVERCNRTILKVIRIANLQGNDWKKALDDFLFQYRTTNHAATGCSPAELLMGRQLRDKLPSVKIPKDRATESEWQHKLRD
RDALSKLRQKEYADARRHAEPSGIDEGDEVLLRQTRRENKLSPVFEPEAYKVLQKTGNAVVLEDSDGNRKMRNVAQMKKF
IKPQEAVAADMLPTPPEIAQEHQTAPETQNQSTLDCTAEMPASPGSLANQRPARTRQQPVRFKDYVLQ
>Gypsy-19_ST#LTR/Gypsy 27-4357 via tfasty with Gypsy1GM, 1 frameshift and 2 stopcodons. [Solanum tuberosum]
MSPDSKLIAPDGSDSSGLSDADLRSHLASQQLVIQDLAAQVANLSSRLPSLMVAPPSSMAGGSSGGHMPVRHKPAPVEFG
RFNGAQPDAWIFQADRYFDFYGIIAEHKLTLASFYLDGEALEWYRWLYRNKQLSDWPRFTEKLLSRFRSRHVLSPEGRLS
KMVQTSTVADFRRRFEAVLNETMTLPEEFLVECFLSGLQPDILTAVTAHEPTQLDQVINLAHIQEQRIIAEKGPPRPAFA
RTQPLLPTPTSQSAPIAPTTPSNGRLPFKRLSQAEMQSRREKGLCFNCDEKFSAGHRCKTDPQLLLLSYEIEDPLLMPTP
VISNEVLAEELQCLEVQAHSTISYHALTGSVSAYVIRLTGHVTGSPVQVLVDGGSTHNFIQSRVAKFLQLPVTPVPIFSV
VVGSGQLLKCDGVCQGVPLTVQGSTIHLDFFVLAVHGADLVIGASWMATLGPVVTDYRARIFEFNYRGQRYSWHGDPPDV
QPIQLHSLRRLSATDAISSYFHLKLVVDSPPAEDDTSPDIIALLDYFSTVFQKPQGLPPVRPQDHTIHLLPGTDPVNVRP
YRYPYFQKNAMEQLVGDMIRDGVIRPSTSPFSSPVLLVRKKDGTWRFCVDYRALNAVTVRDRFPIPTIDELFDELYGAQF
FSKLDLLSGYHQIRVNPGDVEKTAFRTHEGHYEFLVMPFGLSNAPSTFQATMNDIFRPYLRRFVLVFFDDILIYSPSWTA
HLEQLRLVLQLLQEHKLVAKRSKCVFGQASVDYLGHVITTAGLAVDPTKITICHCHSLQLTESSLPLVxQxTQPKLQIIQ
QWPTPSSVKDVRCFLGLAGYYRQFIHHYASIAAPLTDLLRKEAFVWAVPQQEAFDALRLCLSSTPVLALPDFSKAFQLET
DASGVGIGAILSQNGHPVAFFSQKLSKRMQQASTYHREMFAIIQAVGKWRQYLLGRQFTIVTDQQSLKNLTTQTIQTPEQ
QKWLRKLVGYDFTIIYRPGRHNGAADALSRVPDVIYMALSKSVPTLLTELRHLNTSHTELLALKQSILTSPTSVPAYCIR
DGLIFYNGRLVIPSGSSLCQQLLLEFHASSIGGHAGVARTYHRLASNFYWKHMKQDVKVFVSTCQICQQVKDINHHPLGL
LQPLPIPELVFEDIAMDFITCLPSSKGKSTVMTVVDRLSKYGHFISLPSTFTARTVAEAFVVDIIRLHGPPRTIVTDRDP
RFIHDFWQEIHRLQGTTLAMSTAYHPQTDGQSEALNKCLEQYLRCFVADTPKDWVAMLPWAEFWYNTALQTSAGMTPFEV
VYGCKPPSITRYVMGDSSSDLVEQFLLQRDEVLQLLKLNLTKAQKRMKVNADKARTDIHFQVGDWVYVKLKPYRQYSLRL
QPSHKLGRKFFGPFQVLKKIGAVAYKLDLPEVAKIHPVFHVSVLKRCVGQPENQVTPLQLTESNSDLPLPSMNLEDKVPN
SEGS
>Gypsy-16_DWil#LTR/Gypsy 29-4678  [Drosophila willistoni]
MSNAVQVSDLTLDQLKQWLATLNMPTNGSRNELVLRLYSVPVETRGHAPPGWNEHDNSEHNLDDIQLMRPNPDQLNEASI
GDAIPRSVQQEAVNSNFNNNNDVALVQQLLQQLQLLIPRIEHGHDLGRSFQNLENNGNATGNVIDNNVANENIDDSSIPI
HGNATVEATNQYSGNSNGESMGIAFSLAKEVLMDFNGESCSKKWVAQLKNIGEVYNIGNTHLRMLFICKMKGKAHSWLHS
EVTRIREPVAVLCEQLMAAFGEKMSKSQMRRHFEQRNWKFGEKFAVYLDDKLMLANNINIDEEELLDKVIEGIPDKGLRT
QARIQCFANPKHMLAAFAEIHLEDIRRATKDENETSRANKLQEMRCRRCNIRGHLVKDCNRPDRVPGSCFICGSMEHWAA
KCPDRKGSRETNGLNRTNQSSNNFVREFIIHFVDSPSNSFIAACLIDSGSPVSLIKKKHLPNHSYLYSVEQSYQGLNGSP
LITLGKLLCYVVKNSIKIYFYLLVIPDESMSRDVIFGRDFLTSCNLKLDLDSFEKSALVTSQSHDNVRKVNFKEIGMLTS
EHMENEIVNISVTGNTENKNINANDKINTENVNADKEIIEYNVVNKRTCIDKEMTLEFEKNIIKGTNEEKYRIEEIKLKE
PRSESETNMEDNFERRMLEIFYIDNGNPEPEYVIGENIDYKTAKSFDKLVRDRYVNAQRPDKPNIRCEMKLNLENCKPFS
YAPRRLSYSEKEKLQKLLDEYIREEIIRPSDSEYASPVVLVKKKTGDIRLCIDFRKLNKMIIKDNYPLPLIDDLLDRLVN
KRVFSKLDLKNGYFHVFVDKESVKYTSFITPLGQYEFLRMPMGIKNASHVFQRFINRIFEDMVRKGQVLVYMDDIMIASA
NTTEHLQTLEEVFDRLVRNKLRLRMDKCEFFMSSIKYLGYKITENKICADDKGLDAVKNFPVPGNVHAVKSFLGLCSYFR
RFIKDFSIIAKPMYDLMKKDKEFQFGKEELECFLNLKQILLEAPVLAIYDPRDDTELHCDASALGFGAVLLQKKADKKLH
PIFYFSKRTSEVESKYHSFELETLAIVYSLRRFRIYVQGKKFKILTDCNSLTLTLNKIELNPRIARWALELQEYDYELAH
RSGKQMQHVDALSRCTNIMVIEPNSFEHNLVICQAKDLELKKIKEMLEKSEHKLFEMRNGVLYRKSNDKKILFYVPKEME
NHVLYKYHDELGHVGRDKMLDAIGKSYWFPSLKDKATRHIENCLRCIAFSPKCGKGDGFLNSIPKGDKPFELIHIDHYGP
IEAGRSKKHIFAVVDGFTKFVRLYTTKTTKTKEAIDALKAYFRSYSRPKCIISDRGSCFTSSEFESFLVEQKVQHVKIAT
GSPQANGQVERINRTLGPMLAKLTDPDKGNYWDTVVENVEYALNNTIHRSIKQYPSIMLFGIEQRGVVTDELKEEIKELR
NTENQINLEMIRKNAALNQQKAQAYNERYYNSKRTGQKEYKIGDYVMVKNFDSTTGISRKLIPKNKGPYVVDKVLKNNRF
LLKDVEGFQLSRNPYQGVWCGQNIKPWLRT
>Gypsy-15_CSa_gag#LTR/Gypsy 452-1603  [Ciona savignyi]
MRRFGCSFARPNTTPQRHRTEDPFASPELHEQAIPQHEQVSDVFDCALGFPGYSHVNAPPTTILRETDSRNPLLEHIPMT
TELPPTANFDQNMASTPHVCYIKATKKTVELPPFTEKSPEHWFARAELIFSNNNVLSEAGKYESVLMALNESQFSRVVDC
TDALADLPFISLKNALLKRYGRSENEKLETLLETTELGENSPSDFVARMKSLLGLNRNQDSWILFMRNRLLKCLPPDVSM
VLKALCHLSLDELASRADTMIIGHKPVLSESYLHQRKQALINESLERRLESITSSLQQLTARSRPVYDQPTDNYDRRPTD
FVSRESPPLRRRDSFRGDRRPGTPRNYNRSPRRFCYFHNRFGRNAERCVQPCNWNAFNTTAPKN
>Gypsy-15_BG_pol#LTR/Gypsy 1716-5711 [Blumeria graminis]
VKRPTPSLSRCQGYNWYGDEDKAIQDILMDNSTLELCSTGSSNSMLLSSSLSNPRTNNSVMFPTTSLIDSGCTAMAFADK
NSIVNRFGIETKPLYTPRSVRLADGSTEAPITHYFTFRLHIEQHSEIIVFFVTNLSRCNPIILGLPWLKLHNPKCDWSSL
SLTFSSLYCRHHCLDWKYLQSNSSQQVRSVTAISLTDKILSIPVTHKPLQTAAPDNYEIESFLPNFNNPDTPKYEKETTF
TTFKDDNEFDILQIFPSPDHPDISDLLRRKVIQSDIDKFLQDKPELNTEAIKAILPLEFHHYTKHFLPKNANSLPPHRPW
DHKIELVPGKQAPYRKNRPFSPAELNCVKKWIDDMLAKGFIRESSSPVAAPILLAAKPAGGIRICQDYRGLNDVTIKNRY
PLPLIRETLDSISRARYYTKLDVIAAFNRIRIAEGHEWMTAFTTRFGLYEMLVTPFGLCNAPATFQNYINHILHDALDKY
CTAYLDDVLIYSETKEEHTKHVDDVIHRLGDAGLQIDINKSEFYTTKTKYLGIIISTDGLSMDPDKVKVILDWEKPTTVK
ELQKFLGFSNFYRRFIRGYSGVIEPLTRLLRKKSPWMWSVEQADAFSKLKSSFTKAPILAYFNYHKQTVVETDASNWASG
GALLQKGDDGILHPVAFFSSKHSPAESNYEIYDKELLAIIKALEEWRPELVGVQEPFEIITDHKNLQTFLTAKQLNQRQV
RWSEFLSQYNFIITYCPGSHAVIPDTLSRLPGQQPKDDSDERLQHRFRTLIPEHKVHPDILHSLLNKIQVVDHISAISHG
TSITEAISLAYKNNDIAKLIINSLQDTTKRWWPGPLRSLLRKDKVEFKINAGFVYFRKRLFVPDYENLRLEIVHRSHSSG
PAGHPGRVKTLDLLQRTYWWPQMTKFVADFVKGCALCFRTKTPRSSPPGFLKPLEIPVRAWSDISIDHVVDLPPCKRDGK
IFHNILVVVDRLTKMRHFIPTTSLDISELVECFIKNIYRLHGAPDSIISDRGSAFVSEFWRRINTRLSITLKPSSAFHPQ
TDGQTEIVNASLNQYLRSFVSFTQDDWVDWLPLAEFSGNNQTSETTGVSPFYANYGFNPRLGIEPPEPKPPLLSNTAKRE
YLRADLVADRFDRILSKLKAMSHQSQEKYEEYANSRRSEAPVYRVGDKVMICLRNLKTNRPKKKWDDRWDGPFTVLKTYD
GAVIIDLPDHIHVNNSFHTSLVRPWKDPVIPGQSFINKNERRSVAGRVAERDDDGNIEDKWVFEKILDVHNQDCNGLTYL
IKWKYDDLPSWQPESDLKGCEKALTDFHNLNTHKPGPPSWVNIPTTNKSIAP
>Gypsy-15_DWil_env#LTR/Gypsy 4908-6321 via tfasty with Gypsy4_env, 1 frameshift. [Drosophila willistoni]
LLVASVKLTDYSMSNYIPVMDGDVTIWDYAYLGHTTNVTSYQTYAEETRVLVESFKQEHVRKVILADIDRISTLIGTLRV
HHRYARSLNILGTALKVVAGTPDFDDWEQVKFRQNQLSEQGNRQIEINSKLQDRLNKLTNSLNEISKIDELNIEHLFETV
LAKNRMVISDLQNLILTITLAKANLISPVILNDLDIEEIKNKHLTNISVTDILEVASIKAFQNNEILHFLIKYPNPKLAC
KKINVYPVQRKNIVLDFEKGSIVADCGTESYAVTGCDVAVSTTFCRRSPTPNCAQNLISGTPARCGTRSSHLDPLTVVDD
GIIIINDVTATITNRVNQTQVVAGTYLATFDDEVTINGTLFINNYGALKKKPMVAAISQINITSHREKLSLPLLHELSLT
NLQNIGQLRSNLVSGSIISSGATLAISAVAIFIIYEVRRRWKLKHQAQLITSLKTALKKSEDVHHLAEGGV
>Gypsy-16_DR_gag#LTR/Gypsy 109-2046 [Danio rerio]
MDIIEKENVDISKAVIVGGMTLTETDSDLESWLLRYGSINRHLLIDDPDCEFHRHAIIEFTHNSAMKTLMPLLPLTVVSM
SNPSTTFMVRALSCVYPHIASDSATNGYLEELQNIASFSGKSIEEVLQTELLKIKFGPSHAESLPVLDKKLEFPNAARSQ
ILDRSTVSSPNRLLSPVISQSMITEQTAFPSSRISPFHEVESTNSKNLSKESLNHRSTKPTVTVSSHPALTMDIIDPPSV
QKVVVEHIVRTNDTAPMHHTSFRLRSFSGKIPRPVNEPDFDTWRASVDLLLTDPSISDLNRARKIIDSLLPPAADIVKHV
SPNSLPAVYLELLESVYGSVEDGDELLARFMNSFQNNGEKPSTYLHRLQVLLSTAIRRGGIFEEERNRYLLKQFCRGCWD
SSLIADLQLERRKATPPSFAELVVLIRTEEDKNASKEERMRKHLGLNKHYPAPSKFRLSAHQISAHQSETQDDQTDTSLA
KQVCELQAQVVALQKPSSQKEKKKNAKPDEVSELRNVVTELQAQITAMQTTATPKIKSDVEATEIADLKRQIADLKVQLT
APDMYRNRTRNLLPEPRATDCYRASKLPESRPRPGYCFRCAEDGHLASSCSNAPDPTKVAEKKRKLRERQAQWDTQQVAI
MNPLN
>Gypsy-16_DAn#LTR/Gypsy 110-5014  [Drosophila ananassae]
MDTININDYTAIELREWCKCLLLPSHGNKNELAARLNKLSADHRGECPKTKHIDLIKNPKILCDIPQNSNEHEIEKQQDN
LSEDKPEKKKQSSKEAAEMLQGTDEMQNQKQLGDTNDETKDQLRKHNTNEETKDRQLTRNTNEEAMDQNETQKTKETVEN
EQEKLLGAEEALNEDQQNENGGATKEGKYCELTNERQQIASETVAMGRQLNEIREAEIIRRELELLRLEKEILQKENNFL
KANERASSKQEQMGDEIPFQSLRELLPDYDGETSVNAWRKHINFLRESYRLSENKLRVLIFSKLKGKAQNWLHSKPEMVS
ESIDGLLSAMDNAFVFEESTIILRQKFETRKWKSGESFSMYFNSKVELAKSILLTETEFIQYVIYGIPDRQIRTTANMMR
FKTKEDLLSSLLLAELTPVRPAGSLNVNSKPNEEAKGNLNEKQKLRCYNCNCVGHMAANCRKPKREEGACYGCGKMDHKV
ADCTENKKKKDPTNRYGSSDYVSYFNVEIDGSSNSPFFIECLIDSGSPVSLIKKSFVPADVKMKSASEAVYFGLNNSRLI
TNGRIFALIKIFNKVTRLEMLVVPNESMRTSILLGRDFLNLSGAKLIWNKSDESDEIDNPVENIDNELQEKEFAMCTDDF
EKKIFTIEYETNDIDINIGENLSNIEKTQFNDLFEKYYTTPVRPNEPETKCEMKIITNELKPFSCNPRRLSYAEKKELQK
ILDEFVEKGYIRPSDSEFVSPIVLVKKASGELRMCIDFRKLNKMTAKDSYPIPLIDDLLDQLSGKKWFTKLDLKNGFYHV
FMHEDSIRYTSFTTPLGQFEYLRMPFGLRNAPSTFQRFVNKIFNDLIKEGKVIVYLDDIMIATEDLETHFEILKEVFKRL
VRNKLELRLSKCEFLQMKVKYLGYTITGSGIKADEKGIEAVRKFPVPTKVSEVQSFLGLCSYFRRFIQNFSTIAKPLYDI
TRKNKEFQFGKVELDTFETLKEKLIDSPILALYSPNDETELHCDASSMGFGAILMQRKSDKKFHPVLYFSKRTSVTESRY
HSFELETLAIIYALKRFRVYLYGISFKIVTDCNSLTLTLSKKEINPRIARWALELENYDYKLEHRSGLRMQHVDALSRCT
NVMVIDTNSFEENLICQSKDDRIVEIKAMLEKIEHKFYEMRNGIVYRKNNNDSILFYVPKDMETHVLYKYHNELGHMGTD
KVVNVIMKSYWFPKLREKVGQHIQNCLECIAFSSKQGKSEGYLHNIPKADKPFEMIHIDHFGPVTTKDGKVRHVLVIVDG
CTKFVRLYSARTTKSKEAITALEDYCRSYSRPKYMVSDRGSCFTSSEFSDYLETCKISHIKIATGSPQANGQVERINRSL
GPMLAKLLSSDNKHSFDKVLEMIEFTLNNTVHRSIGQHPSIMLFGTEQKGALIDGLKETLQGHCENERIEIIREEARKRE
KQLQSYNERTKNEKRKKSIVYKLGDYVVVKNFDSHTGISKKLVPRFRGPFKVIKVLGNDRYIVEDVDGFQQSRVPYSGVW
ASANMKPWLGWLENERDDQDNDEFELDEKEEERTNETSNENEKVNEQSNGMSKENIEISLKNKPTVRIKRNEIITTNESN
KNMNVNNNKSIDITTKNVTNRVSRTYNTRSKSKKS
>Gypsy-1_DP_pol#LTR/Gypsy 1924-5696 via tfasty with Gypsy-15_NV_pol, 1 frameshift. [Daphnia pulex]
TSVKLEPVARGERATVVLNFPHTDSRRLILKQIDCQGQGVKAIIDTGSGASLISPKFCKALGIENFREWEGPRLLLMDGK
TLEPSGMVKLRIHVEGRLIWVIAAVSEMNGFDLLLGNDALSQLGCFSVQYNEAGVGSFSTTPTTSEEIPKGKAGYIVNYE
TLSIPAFSMMHVDVVVPQLGGQNPGHMVEPSPKVMADKGVSLGRLLLPSRVTGGTHRFPLTNFSSSTQFIPAGMVVGKIL
PVDQVDENRESGPTAVPTEPSLPFASRVNTNLGDEDRERTVALLNRYLRCFAASPHELGRSNVVKHVIDTGNHLPVHQAP
YASAWRERELINDQTQTMMRDNVIVPSNSAWAAPVVLVRKKDGEWRFCVDYRRLNAVTTKDVYPLPRIDDALSRMEGSRY
FSILDMQAGYWQVEVDEQDRAKTAFITADGLFEFKVMPFGLTNAPATFQRMMDVVLAGLKWNSCLVYLDDIVVFAPTVSQ
HLERLESVLQRIERAGLKLKLSKCSFLEQSLKVLGFIVSGEGISPDPEKISAVRDFPVPQSVKEVQSFLGLCSYYRRFVP
NFAVVARPLSNMTKKNQRFSWGEEHQRSFEAMKTILISPPILAHPRYDLPMEIHCDASNYGVGAVLVQKHGDEEHVVAYA
SRLLSNPEINYSVSEKECLALVWSVRKFRSYIWGLKIRVVTDHHSLCWLLKKRDLSGRLARWSLQLQDLDIEIVHRSGRL
HSDADGLSRAPTGCPEEEEEIPLLNIAVTPGALDVGSAQRESSWWEGILRGMKDTAPTLRIKKLIQPYELRGDVLYRRRI
RGGVVSYQLCLPKSLVEQVLLACHSDVTAGHLGVTRTTHKIQQRYYWPGMRRQITRFVLSCVDCQTKKRAQEAPAGLMRP
IRVSQPFEKVGIDLIGPFPLTSAGNRHAIVAVDYLTKWAICKAVPSASSKEVVDFFVRNVVLQHGAPVFLISDRGKCLTA
DFSEELFKALQTNHLVTAAYHPQCNGLVERYNHTFAEMLSMYVNSLHNDWDGFIDFVTFAYNTSRQESTGFSPFFLLYGR
EAVLPIDVALGNNPEKDLDVGDSSDRARTLTTKLSAIREIGEKRMAIVQSRQKKRYDRRRRQVKFAIGDPVLVYRPIRKK
GRATKLLHRYFGPYRIVRRVSDLNYIVEPLNGRKKNQDCVHVSHLKPFRLSAPSGKASVKSTVVKTPVSIIKKKTTDDQV
KEKTPKVVRWCDQQTRAVDQEQHCEKDASSTTGLSDERVGGHVLRSRRRLKSPTRLDL
>Gypsy-1_BG#LTR/Gypsy 34-4913 via tfasty with Gypsy-14_BG, 1 frameshift. [Blumeria graminis]
MSSTFKSPQSQFYDMDDVSSSRPESPDVGIQLIPSQFWNSQYLLQVPGALNAASSLDPARVAEVFAQSNQRTEALPAFTT
PSSTEIPTRLSVPPIAPYDGKSSSLRLFCSQLNNQIQSHCHLFQSELSKVRFAYQCLGPGALIKMRSCFRFLEDPSAPPE
ITTMNEFMAALKRQCQDPGLEDKATRAVETMTQRNMSFQDFITQFEDNIIDSTYGCSEKSIWKKMLERRLSYKLRDIILS
SSDAPTEYHAFVTYLRKKDAGIQEMRAAFSSYPKTMYAPNTLSPGKKYPTTFKPINQGQAVPPWPRDQVELTTSQGGSAM
DLDAISREKGPDGRITPQARDARRSLGRCYRCNTRGHLAINCALRSDSGTPIFLENITEAPGIVKRLTPAQSRPLESLMV
GHAGLPECSSSSRHMYLNAKIGNETIYSLVDTGASGCAFISESLSKRLRLHCNLLPSPVLLVGFEGNRGPLVTHEASLTL
KIGRHKESLKAYITNPCKHDLILGLPWLEKHNPYVNWEEHTITFGEKCLQNSCCQFETTVPYENSVDPTTVSNSPGNDIT
TPKLCSGIQINSLSELTAKEFSALSQQVDHEYFALSLRDLDILVDSTMERMPTMFVGQIKTVLPKDADPKIYLPAQYHEY
LDVFDRGRANKLPPHRPWDHAIDLQPGKMPPASRPYSMNLHELKSLREYLEKELAKGFIRVSRSPVAAPVLFVKKPNGDL
RFCIDYRGLNAISVKNRHSLPLITETLSQLSQAKLYTKLDVISAFNKLRIKEGDEWKAAFTCRYGLFEPLVLPFGLCNGP
ASFQAYINHALRGLLDNFCTAYMDDILIYSENLADHRKHVNTVLQRLREHGLQVDISKCDFETTQVTYLGLIVSTRGISM
DPKKVACIQEWPTPRSVRDVQSFLGFANFYRRFIPEFSRLAAPLTQLTKKEVMFEWSSACESSFCSIKRAFRDETMLAHF
DPRKQTILETDASDYVTAAILSQYDKDGTLRPVAFMSKKMLPAECNYEIFDKELLAIVNAFELWTAELGSVEASTLVLSD
HKNLEHFTTTKKLNRRQARWSELLANYDFKIVFRPGKQGGKPDALTRISRDKPSEAEDERTKYQNQVLIKPCHILRRIDT
SNAQDLSPVEESPVFAPSLNEWRKHCEEDEFCRRTRRDIENPSSERKDIQLASCTLTDSSFSLNGKEYVPEVLREIILNQ
LHENPMYGHRGAATLYSLLSRKFWWPECHKDCTKYARGCEACQRNNPSVQKPHGFLQPLPAPQAAFRHLTLDFVGPLPIC
KVRGFDYRFILQVVDRLTKRVWIIALERPTARETAEAFLDNIVRFSGLPDSLVSDQGRAFIDKTWKEICHRLNITHKLST
SYHPETDGQTERANKTLEVYLRHYVNYHQDDWARNLAIAEFCCNNQINASTGVSPFFACFGHHPRMDFRSESEAPIPRNI
PEFVTRIQRLTQLCNEKITLAQAFQATYANERRLPAPRYKTGDMVYLSLKNLTLSRPTKKLDHVRAGPWRITIMKTPLVA
KLDLPPQLKIDNNFHVSLLRPAYIGYPSQHQESPPPIEIAPSGHEIHEVESILDSRIRRNKVQYLVRWTGTNDTTWEPFE
HLDNCKDLLVDFHKAYPNAPRAAECAH
>Gypsy-1_LG_gag#LTR/Gypsy 142-1002 [Lottia gigantea]
MSTEEETTFFHTLSDQLNRLTNSISTNGVVTIIDSFEGDPKAFREWTRSIEKYAVLASIPNDRMKLIAYQTSKGVVSNFI
RRYLDTHPAADWPTLKDELSARFAEVTDAQHAFALLRKVKQNHNENVQFFGERLLVLASEAYSGTSSLEIERQLVGFFVD
GLKENYLKLKILRENPKTLQLAVTLAMGEQNLRTRFALRTGSNFPRNEDSSSRDEPMEVDHFRPRKCRICYRHGHEAKDC
RRKPNNRQVNSADTFRASRPPIKCWRCGKLGHKQVDCKVRLNSGNH
>Gypsy-2_DAn_env#LTR/Gypsy 7113-8525  [Drosophila ananassae]
MSAARIYKYDAPVVPLQQGGVWRINGIFKLVHVIDISRMMQLVDETSRDAATLSDQRIKTITRHYLEQAAEGMNRVMRPT
TRRARAVNWLGSAWKWIAGSPDAEDWNAVLNSEKMISENNNQQIRINARLFDASHKSIQELNDVVARVNAIDGDLHAVTA
TLHKAIILAGQVAEITRACQLAKTGVTNSNLLDHEEIEAILMEVNDLPYQNAVEAVEFSRPTILSNGTTLLYVLALPKVS
NRRYELVRLYPTVSGGRQIVLEHHKFALNGEETYAVVGSCSTIGNITVCPEEDLIALEENSCIPRLLKGGHASCSYLRSN
EEVVQLVEDGTLFLSNYNGSLTTLERDYQLEGTYIVQFNNEVVAVRNKNFTAHSANHPMALPPVLTNITVTGYRPSLGYV
DDINAQNTQAMSGVSRGVTFSYVLEASLTLVVFLTLFIIWRKLTSTKGIPTTRVITEDLENTKKTSTTAHQ
>Gypsy-2_CSa_gag#LTR/Gypsy 538-1941  [Ciona savignyi]
MCLVGLVQDSYSNLGTEMALSGFSLNNLFPRRNPRHSPTQTSTTQSVTFANAFDNGHITPESSDSSAQVSNASCFGLPDS
LGTPFDLDDRVGRHRPDNVPPTTYPMERPLFPSIVPLSSAHPPDYFCPNSKIDLRPIWRHSIAFWFDYVETVFVKENVTS
ERDKFDATIVALSDEVIEKIHFVINPSSATPYSDLKNAVIRKFTRSNEQNLYSFLETRDLGNYSPSEFVHKLRAKLGAHR
DSSLGDRIIRQKLIKSVPPNIGIILRSRADLELNKLADLADDISQDFGQEKDLSAELQRQALVNKSVEQRIDKLTEYVKS
LIVASKSKLSSLAEPVCRAVSFPSRPRFPYRPQFGRGYNSRKFVPRGPRGDFPRGQRLCYRHQRYGNDALGCDGPCNWNQ
FSKTRTFLSRIPHKRAYSIASCMRPIPHFSLDKFSSSRLLRVFDRRNKLNFLIDTGSEISIVPVRDKR
>Gypsy124_DR#LTR/Gypsy 287-4672 [Danio rerio]
DWAGCLVFFIFFAHNICFEGLATFDLNHFIDQPSVEELEVCRKNDLFLIAQHFEIPVVKTQRKAEIKACISDFLIDKCIF
PVTETVVTQAAESLVDAEGSSQVRVGDLTTPGDVVNEEVCPPFSLPKFEPASLSEASTEFRSDWLLKLRLARLQLETQDR
AQARQDDLKHQIEMYRIDADMKVRMRELELQAAQTLSKTPVRSINVNGGVDVATAPADASIVVNSVPSDEKPDALIPSRY
FNVAKNIALVPCFREKEVEAYFQAFERIATALKWPNEVWALMLQCKLTGKAQEVCASLSVEDSIQNEAMKAAILRAYELV
PEHYRQRFRTTKKSASQTYVEFSREKGILFDRWVKACKVTDLNSLRKLMLIEEFKNCVPERTALYLNEQKVSTVQQAAVL
ADEYALMHKTVFKRTSENVLSGYENEKIPENKVWASSNLKSRKECRYCHNLGHIMSECHTLQRKQERQESMQPRGSVLEK
TLPFSSIPEPDPCFKPFVFDGFVSLNEGDGGRKSVRILRDTGGSQSFILADALDFCDSTACETSTIIQGIEMGYVTVPLH
RVWVTSELASGCFEVAVRASLPVKGIDFIMGNNIAGGKVMPVVQVTNLPSYEKQLDVCAETFPEVFPSVVTTRAQLKCDR
SENQCLNDSFFSQILGDDVLPESVVKDQTATSSVRSDLGTDLPVSREALIDAQKGDPTLQKCRTNAEVSSPCRRNCHYVW
KDSVLMRKWVSTLSEPENEDDWVYQIVVPSKFRQSVLSLAHDHLWSGHLGINKTYHRVLRHFFWPGLKSDVANYCKSCHV
CQVSGKPNQSVPLAPLCPIPAVGEPFERVLVDCVGPLPRAKSGCQYLVTVMCAATRFPEAIPLRNITAKSVTKALTKFFT
TFGLPKIVQTDQGSNFLSRLFKNSLKALGVSHVVSNAYHPESQGALERWHQTLKSALRKFCVETGNEWDEAVPFVLFAMR
EARQDSLGFSPSELVFGFEIRGPMKMLKEEFLGISPCKTNVIDFVSHTRERLRKACDLAREALSLSQQKMKRFYDQKTVV
RNFSPGEKVLILIPTPGSALTAWFSGPYLVKSKVGETGYIIHTPDRRRKTRFCHVNMIKSYVDRADTETVSVSAGEWKPA
TDIKEGVSLLTCTLPEDVDDGFSMPIEVLNGGLMKNSELLLTLPSQLTYLSHDQVQDIQKLLESFPDLFSDVPRGTAVLT
HDIDVGDALPIKQHAYRCPINKREVMKAEVDYLLRNGFAVPSSSSWSSPCILVPKADGSFRFCTDFRKINAVTVPDAFPL
PRIDDCIDNLGAAKYITKLDLLKGYWQISLSERASNISAFVTPDAFLQYTRMAFGLRNTPATFQRLMSIVLGDVSNCNTY
LDDVVIHSLTWSEHLSSLSDVFHRLSAASLTLNLKKCEFAKASVTYLGKQVGNGFVKPVDVKISAVLEYPVPATRRELRR
FLGMVGFYRCFCKNFSSVVAP
>Gypsy91_DR#LTR/Gypsy 44-4240 (1 stopcodon) [Danio rerio]
MTTPSATPFAEVIQALVVLHREQHEALVEIRADQDQRFRALVEAQREDRELVRRLLDQGIRPASTSAAHPPISLQKMGPQ
DDPEVFLDLFEKMAEACGWPRAEWPVRVIPLLSGEAQIAAQQLPAQNLLDYAHLKRAILQRAGCNPEEQRQRFRSLELSE
SGRPFVFAQQLRDACRRWLIPDGQNIDQVVDSVVLEQFIARLPSRTSEWVQCHRSTDLETAIQLAEDHLVARSMVGDTTS
LSSLSLSSSLSLPSPRPRQQGPPVPAPRKRGSGADTSRSMPRWGGYPERGGEARPLVVSPATTGFSPAQSVGPTGPGGAV
VRSGPTCWRCGGVDHSPENCSAMEVGALIRVPDAPAVAPGRNGLYQIPVSIKGDKYQALVDSGCNQTSIHPCLMQDTALD
KSRTVRVRCVHGDEIHYPLAAVEIQFRGQKHSVEVAVNPHLKHPLILGTNWPDFNKLLGVLTAGASWRKGSTARGRIAQL
GESPVTSSHSDSEGGLGISRCKDFPLEQSRDDTLRNAIEQVKVIDGHVLQPERPLNYPYFAIIKDRVYRVTQDTQSKEDT
TQLLVPKSRREMLFQAAHANPMAGHLGQAATLNRLMARFFWPGIHGDVSRWCAACPECQLVNPPATPKAPLRPLPLMEIP
FERIGMDLIGPLERSACGHRFALVLVDYATRYPEAVALRNISAKSVAEALFRFISRVGIPKEILTDQGTAFMSCTLRELY
ELLGIKSIRTSVYDPQTDGLVERFNRTLKAMIRKFVHKDAKNWDKWLEPLLFAVREVPQASTGFSPFELLYGRQPRGVLD
VVREAWEDEPSNSKNEIQYILDLRAKLHALGRLSMENLLKAQNEQRRRYDKGTKLRTFSPGDKVLVLLPSSSSKLLAKWQ
GPFEVTRRVNDLDYEVVRKDRSGARQIYHINLLKLWREPEDVALATVITGEDDLGPECVDCNRSSALVAGGDHLSLAQLA
DVQLLQNEFKDVFSPLPGRTNMIQHHIETEPGVVVRTRPYRLPEHKKKVVQEELGKMLEMGVVEESHSDWASPIVLVPKT
DGTVRFCVDYRKLNAVSKFDAYPMPRIDELLDRLGAARFYSTLDLTKGYWQIPLSPISREKTAFTTPFGLHQFVTLPYGL
FGAPATFQRLMDKILALHSAYAAAYLDDIIIFSNDWQRHMQHLRAVLSALRRAGLTANPRKxAIGRVEVRYLGFHLGHGQ
VRPQIDKTAAIATCPRPKTKKEVRQFLGLAGYYRRFVPEYSALVTKVKAALCGGPLLHAPNFALPFILQTDASDRGLGAV
LAQEVEGEERPVLYISRKLSNREAKYSTIEKECLAIRWAVLTLHYYLLGKEFVLCSDHAPLQWLHRMKDTNARITRWYLA
LQPFKFKVIHRPGEQMVVADFLSRAGGGGRAAGRTAARP
>Gypsy87_DR_pol#LTR/Gypsy 1503-5612 (one stopcodon) [Danio rerio]
ESSFLATPGKRVEAVIGDQMPASSSKVVHSDSVVYNTPSTPFIQIALAGTELHALVDTGSGLSLITDDCRKSIPALSTQS
ISRSFVLASSVTGQPLDILGSVTAPIHIGDVTFSHVFHVVRTATYPVIIGWDFLIEHNVTVNISLTRLELHNTTVPFSSP
HSLIPVQNSAVTIAQVTIPPLSEVVVPISVKDKGVANLFIDTLGLTLGVARTLTTVQKGRAIVRVVNPTNEQVSLDAGCP
LGQIFSVTGNAHDEYALVSAVTSSEALRGHPMSDVHLEDGQLNADEQVELKSLLKEFSDIFSVHSHDYGKTNLITHSINT
GNAAPIKLRPYRTSPATQAVLQQEVSKLLDHNIIEESQSPWSAPVVLVRKKDGTHRFCVDYRRLNDVTIKDSHPLPRVDD
TLGRLAGARVFSTIDLTAGYWQIPLNPSDKEKTAFSTGAGLYQFCMMPMGISNAPPSFQRLMELVLRGLHWSICLIYLDD
IIIYSADFSQHLQHLREVFQRFRTAGLKLKPSKCQFARSSVTFLGHRVSSAGIEPDPSNIDKVRTWPIPISATQVRAFLG
LCSYYRRFISQFAKTAEPLYHLTHKGVPFTWSVEANEAFLVLKQALTSSPIIAFPNFSAPFLLYTDASLHSVGSVLSQKK
EGKEHVIAYASHVLSAAxRKWSTFDRKLYAIVWSVRHFRHYLACHPFTIITDHKPLVGLKKLPLDHDPTGRRARWALELD
LYDWHVIHREGAKHLNADAMSRRPDNNPVDSDSYIQGNMSTFSVATQTTLAPLRAGTASAHTQTLQMNKDVLLPTTISGN
TTANLVLIQSDWNVIEKQKLDPDLAVVFTWMEKGHRPPLWRLREASPYLRKLWTQFSRLIIHNGVLCRHLRNSFRDDTFQ
VVIPISLIPEILSHVHGHPSAGHYGQAKTLDRAMRSFYWPYMSSDIAKHCSQCTACQSRRSPVPRPQAPLIPITPERPFQ
IVAADITELPVSTKGNRYALVMMDLFTKFVNLYPLKDQTAHSVAVFIFDHYIPQHGVPEALHSDQGRQFESDLIKHLCNL
LSIKKLRTSPYHEQCDGAVERFNRTLKGELSKCLFDSGSEWDEYLPQVALAYNTTKHTSTGLTPFFLAHGREARVPIETL
LQDNNASCSATAGTPAGYANKVRKRLACAYRSAIAFRDKAQEQQRLNYDRHLKYTPYNRGDLVLVNDPAHRHNKLHPRWV
GPYEVLQSICPFGSSTPVNFEVHDVSKPHAKAKIIHYNRMKPYITDMQNTHTLTPSPSPAQPNTLNTLSGLLPPHITPAP
PGLPTVPVPLELPQLQTQPQLHSPETLQSFGPMDNGQSLNSGLSPQTQRTPDTGLSTGVSESPDSPVATRNVLSRTRRLP
YHLKDFALY
>Gypsy99_DR#LTR/Gypsy 26-4016 via tfasty with Gypsy-11_NV, 2 frameshifts. [Danio rerio]
MAEGFRRPDPLIFDGNIAENWRKFELEFDIFIAAAHSDKPEKTKAYILLNLAGPEAIERERSFTYAPALLAADGQDVITP
AESREDPECLKRKFREVCNPETNVTMERHSFNTRNQKPGETIEAYVSTLRNKAKTCNFGALTDELIRDRLVCGIDNDSVR
RVLLRESDLTLTKAIKICQISELTEQHTKVLAAPRSGLASVDAIHFNAKGRKKAVEHQQRKHMSGTKNIVNCKNCGGNHP
AKRDQCKAFGQQCHLCKKFNHFMSQCKSASYDNFKSIHQITDANTDSSEESFHIDGLCLGASEIDAVSHNRINKQEIHCS
LTVNGKPLELKIDTGAKCNVISTETYQTLRHDEKIQEKSKTTLVAYGGTVIQTQGTVMMQCWTSKQKSHMLEFHVVDKNV
KSLLGLPDCLKMDLISLKEEVHGIDLNKNPNLPQEIFTEYADLFDDKLGTLPVTYSMKINPDITPVVRPPRRIPVAMRDK
VEAELKNMTKLGVITPILEPTQWVSSMVATHKKDTDKIRLCIDPRDLNEALMRPHHPMRTVEEVASQMSNANVFSVLDAK
SSFWQIKLDHESSLCTAFATPFGRYINSASEVFQRAMEQIFAGFPCAIIVDDIIVGGKGEKEHDENLKKVLNRARQVNLK
LNPQKCKFKLREVSYVGHLFTEQGLKPDPAKIQAITEMQPPSDKAALQRFLGMANYLCKFIPNFSELATPLRQLLHRDVA
WCWSHQQQEAFNMLKKCITFPPVLRYFDVSKPVTITCDASQYGLGAACLQDDQPISYASRTLTETEMRYAQIEKELLAVV
FACQKFYDYIYGKPVLVETDHQPLVTILNKPLQSAPARLQRMILKLHKFDLTLTYKKGKQLILADTLSRAPRKVTTKNDE
EEFDVLAVQMISVNRLQELREHTEKDSSLQILCNTIKHGWPRKIQSVPVQLKPFFPFRDELSVGDGIITKGTRVLVPHSL
QSEYLQILHKGHAGAEATKRRARDAVFWLTITQDIDNFVQSCSICNALKPHQQKEPLHLHEIPELPWSVVATDIFDWNSQ
QYLVLVDSYSGWFEINSLTNISSQNIISKLKRHFSVHGIPQKLITDNGTQFTSQIFRDFASSWDFCHITSSPEYPQANGL
AERAVRSAKRLLETTKRDGTDLYLNLLNIRNIPRDKILGSPAQRLMSRVTRTNLPISKQMLKPRTKDTVKVKTQLSKKRQ
MQKMSYDKKSKPLSPLHESQVVRMQTTKGHDKIGVVRTPLAKPRSYIVESDGKEYRRNRRHVLPVKEPLPHCRQADLEDL
LSQLHSMPDSNSPPKDAVRTEENIPPKPTDQKLPYRTRYGRVSKPNPKYFD
>Gypsy117_DR_gag#LTR/Gypsy 274-1620 [Danio rerio]
MAGVRKDSEFMTPYLGRGRGLFGVEIPTAGKPRALIYSPQSHNTPTNEPVGPTASTPNNADDNVAQQLRDLIGELGSQIG
DSIVNRLLVSQTPVATSNPVTVNRVVPESTSAGHSLANVSLIVKPDIREPPMFRGDDSDKCTIQEWIELMELYLHKADCS
NKDQVDEILSHLLGRAKNIVKVKLKCNPDEAISPETIYDVLRRYFSEHPGSCQPLADFYATQPKANECPVDYWVRLNTAA
ELADSHLQKQGARIKNMSSEISMMFIRNCPDPGLSSVFRCKPISKWTITEIQEAIDEHHRDVQSKTLPVTHVVKSVHVAT
AKVLSSPHTVPGGESLNAAAPAFVPDSPLKAAESPSSEAGILERVLNMLERVLERTSQPAPASQPRVTQWRNTSPCRVCG
DRNHSTRSHCMREKRCLSCLETGHQQKQCHKVVSPAGPPASDSYVQGN
>Gypsy102_DR_gag#LTR/Gypsy 297-1607 [Danio rerio]
MAEGVNSFAEEMKDNEVFDQSIQFGRGRGFFIIPSEPRMPGPTSRAFDTPVLTSTRYVDRAMPSPINQNPDLSSLISEIA
EKLVLRSDNSTNRSNSEQPAEMTLSNVKLVMQSDVKEPPIFRGDGSDKLTVQEWENIMSLYLRKRAIPIEDQSQEILDRL
MGKAGDVVKIKLRNNTSADCTSKPRLIFDILKQHFSTISYSSMPLADFYNTLPMPSEDAMEYWIRLNKTMDVAKECLERQ
GRRVCDPSHEISMMFIKHCPDKSLSNVFKFKSAEKWSAGEIQERLDEHMQERKARTFTNLRSLNITEHRACTQSPDVVKT
VASNSPLSIPPSPMVQSGSDSACMKSLVSLLDRLVTQQTQFQVSPHHQATTFQTYCKPCRVCRSLDHSTVSHCRQDNRCL
KCLTPGHWKKDCPQRADRNQHQLESGAGRPPNQLNY
>Gypsy-2_PI_pol#LTR/Gypsy 1022-4915 [Phytophthora infestans]
MLLDCGATTIYVSRQWVEKHRLKATKFIGKNIRVKLGDNQIVETELEVLPLEILVSGLGEAYKCIAVVYAIPDEFDCILG
IPFFEDMQPQIDWRGRCIEGTQVKTLHWKRTGETSGPIEEGGPVIASGLRRSVEAKGLSAKRPDSCRGAALETDVKSAAE
TVCDATQKESPRVVCEQPGDASAGKGSAVKDNLELSKRGGTVREAGDSSSTGGRGTVVENMFTMGVVDEAGVQTKFITRK
KLRKFLRIKTKSIDEPDFMLVLTNVTIKQVARSLQRQDQPDNVGSAKAQRYLDTDWDSFKGNPAYQLLMEYMDNVFRPEL
PEGLPEKREIEHRIDVEDPNLAMYRQQWRQSPEQQREIVRWVVDMVKKKLIRPSISPHAAPTFCVRKPVGWRIVHDYRYL
NSNTVRQSIPMTRKEDILDAMSGAYWFSTMDLMSAYYQVRMREEDIKFTAFQAPNGLWEYLVLPMGVCNAPATMHRLTSK
LFRGLENTKSFYDDIYVFTKSQSIDDHLKALRKTLNILRDNKLYVKLAKCVFCADEIPCLGDFVGRNGVRMDPDKVQTIK
DWPVPRTQEELHSFLGLTGYVQRFCPDYAAFTATMFTLLKKKNKRNAKIQFNDEQLKNFKELKRRLCNPPVLHLPNFSQS
MHLRTDASKFAVGGVLFQVVDGVERPIAYTSRKMKSAELNYPTQQQELLAIVHALAAFRIYCLDKPPIVETDHKSLEGLF
TQKMANRRLARWYDILAEYQPTFSYLPGAKNGIADALSRRPDLQPDTKYFHDLSVSSFNDTSFSLALSQVSTDSELLKRI
KGAYVKDRDVQTIRAAIQRRTSTSKSKEKHQHHKLYRYYSEANGLLWYQSPVDDHPRIAVPNDVKLRQSIIKESHDTNYS
GHPGAERTYLTLARRWYWSKMLKSIQTFIADCEPCRRNKPRLTKPPGLLEPLSIPDERWRSISMDFITDLPRTKRDVDSI
WVVVDRLTKRCHFVPTTKKVTAEGVARLFIDNIWKLHGMPTNIVSDRDRKFVSAFWQHVFKSIGTSLSMTVAHRAQGDGQ
TERMNRTLEEYLRCFVSPRQDDWDIHLANAEFAINSTVNSSTKLAPFEADLGYIPLNPLQLAAEQLDTVAKSRRGAEFHE
RQAAILFRCRETLAQTQERMRDVYDKNRQEQVFEVGDRVYLSTKHLDPKHTGLPASTKFGPKWIGPYSVVRKIHNHAYEL
NIQAGNKLHPVFNTGSLKPYNESTRLSRPNEVVLADGSIGQIVKRLVKKRTHKRRTQFLVEWVGEEKQTWEPVENLSQVP
DLIVEFETARRKKRKRR
>Gypsy-6_DPer_gag#LTR/Gypsy 1215-2609  [Drosophila persimilis]
MENPDNEPEPAPAPKCQLCGKTLASAPTLKTKCSHEFHKTCIESHVKTHTTCPTCKTLCVDRSTPHNTRSQAKQNEAAAI
TAERVSSMVTQAISTMQNEVVAQLTDKMAQIIQSSIAAHFQETGNSIPQGNRRGEADNPVQQNRDREVGETFRQGLNSQY
SAQFPSYDRPSSAVSDLSQRPDKVAHILNSWKLRFNGTQEGLSIDNFLYRVEALTHQTLEGNFPVLCSNASLLFDGKARD
FYWRYHKTSGSMRWDRLCQALRKQFRDSRTDVDIREAIRDRKQKEKENFDSFHDALIQLMDDLETPMSEKAIVETLRRNL
RPEIRHELLNVQIDSVERLREVCRRREGFLDDVRRSHGYQKLIPFRKQVAELVGEAQLEEASEFSDVEEEDEVAAVALIC
WNCRKEGHRYHDCDSKRKIFCFGCGAPNKYKPSCSKCQKNGKVNTQPRQPVSVQRKQSSAEAKSQ
>Gypsy-6_BG_pol#LTR/Gypsy 1205-5008 [Blumeria graminis]
FGKRLASSLSRDWRKRGLKKDLQMDKIKIHDIIGKLHGKPVLIDAIINSTCIPALVDLGCTIYSVLSDSIATRLNLPRQK
VPPRELKLAKDSDKDMKLIVDEICWANVDLDGKCSTICGYLIPGLAHDIILGEPWMRYNDVIYRARDRVLFLERENHIIC
THSSASHIVQVEMIRHTAMSAFLRRAEKQQRLEEDKKTISVYAASVNDINKMLEPKRQFSREEIKARLPEKLHHHFSIFE
ADKNDETDLPPIRKGVDLAIEIERDEQGRTKDLPRGPLYGMSRDELLCLRKEITQLLDRNWIRASSSPGGAPVLFVKKPG
GGLRFCVDYRSLNAITKTDSYPLPLIKETFRSLSTARWFSKVDVSAAFHRLRIKKGDEWKTAFQTRLGKFEWLVMPFGLT
GAPAAWQRWINSLLHGYLDEFCTAYLDDVLIWSDGSEKDHLEKVNKILERLAGAGLKLDLKKCDFAVKEVKYLGFIVTAG
KGISVDSEKIEAIKRWELPQTQTGVRSFLGFANFYRDIIDEFATLSAPLQRYIKKEFSGKGKIQLDHQARQSFEKLKNYF
ISAPILALFDPERKTVLETDCSGWAMGGCLSQYDSSGKLRPIGYFSKKLSPCECNYDIHDKELLAIVRAVEFWRSELMSL
SQDIEILTDHKNLQYFMNKRTLSERQIRWKSLLDDLPGIKLNYRPGKDTTRPDALSRLEQDNPKEANDPRLLHRQMQLIP
NNWIAPAIQAPINNICTTTINNDAPFEDVELIHLWEEGVQVDGQFRDIVGALKQDKRCFPPSVKSKISISECSIDLNGHI
RWRDRLIIPEYEPLQTALIHKAHDSPVTGHPGREATLSILNRDFYWPRMSNMIRKFVRNCDTCGRTHVWRDKKRGFLKPL
PIPERFHQELSIDFMTDLPANNNQPRYLMVITDRLSKEIILEAMDTMAAESCANRFLNCFYRFHGFPKAITSDRGSNWVG
DFWRRLCERTGIQQQLSTAFHPQTDGATERANQEVQAYLRAFVTYSQTDWSELLPAAQLALNNRDSSLGYSPFFSSHGYH
VPVFSQTSDTNSSQYTSSKARKADSLVKKLEEGQALAQASMAWRQQIMEDTANRGRQQAEVFREGDCVWLNLKNISTPRP
SRKLAWLHAKYRVLKVISPHVIELDVPIGVHPRFHVDMLKKAANDPLPSQQQDDNQPAPADTSVPRNEQEFEIERILKAE
NVRRGRGKRRVVLVKWKGQLEPTWEPRSEVENTVALEIFEQRYGTTNNVGEKNIGMYTGVRRLSKNGG
>Gypsy-6_ST#LTR/Gypsy 33-4532 via tfasty with ATGP3B, 3 frameshifts and 1 stopcodon. [Solanum tuberosum]
MAKGSRPVGETSNDNSVAEIGDLWDMMQNLVTEMGNLAGKVSSLEKLDHAVMELRNQISAENRRGTVPLGQEGVSDGNDG
LGVPRERERSPRISNNFQSNFNRWSRMEFLRFWGEDLRSWLFKIDKFFSMENVGHDEKVTVAALQLEGEAIQWHLSFMRY
RPYLQPPNWGDYVRALVERFGTDFDDPMEEIKKIKQVGSVKDYQSVFERNLTRVNLSQENAISCFIGGLKPELNIVVKIT
NPTSLSQVYKSARMQEAYRRRxGNLTIINLRCIQGSSWYQRNFTSKPLLPTPGSNNASFSKGVSRKTVSLEEMNEKRAKG
LCYFCTEKYTPGHKCKTSKQLYLLEVDEGEELQDSVEDQGNILQESQSDTLDLGKPVEHMEISMHALNGSLGFRALKVTG
YHSKMALYIFIDTGSSHNFIDSDLVKQLGCEVKSINTEVVAAANGSMKVDKMTTVTWLLQGAEFVADFLLLPLGSCGVVL
GVQWLLTLGDIKMNFRSLTMEFWYKGRKHLLRGSGSQVLTSSAGKLSKHSGNQSQLCMIQVVPQGSDEMKGHSLDNDKQA
EENPALLEVLSEFSALFDDPVGLPPSRGIFDHRIVLQSGVEPVNKRPYRYPSVKKDAIEGLVQQMLDQGIIQPSYSPFAS
PVVLVGKKDGSWRLCVDYRDLNKSTIKNKFPIPIVEDLLDELGGSKIFSKIDLRSGYHQLRMANEDVPKTAFRTHSGHFE
YLVMPFGLSNAPATFQGLMNSVFQQFLRKHVLVFFDDILIYSKTIEDHVLHLKSVFLKMVEHQLFARKSKCFFGVRRIEY
LGHFITAEGVSTDPQKIKAVKDWPVPTTLKQLRGFLGLAGYYRRFIQGFGMISRPLNGLTKKDKFKWNPTAQQAFVQLKE
ALTQAPVLALPVASKTFIVETDASGYGIGAVLMQEGHPIAFISKALSSRHAALSVYDRELLAIVQAVTKWSQYLLGQRFV
IRTDQKALKFLMEQKLHTNSQLLWLTKLMPFDYSIEYKKGIENKVADALSRVTGAEFLALIISPTNTDLFQAIVASWHSD
QELHQLITELQADPTSHSQFTWLQGQLRRKGKLVIGNVQSLRTDIITLWHAGPLGGHSGVEATLKRLLTLFYWKNIRTEV
KEFIQKCDVCQKNKSDLAAYPGLLQPLPIPEVVWSQISMDFIDGLPKSKGHEVILVVVDRLSKYGHFLPLKHPYTAQSVA
QVFLDTVVRLHGLPDAITSDRDAVFLSSFWQELFTLQGVLLNTSTAYHPQSDGQTEVLNRCLETYLRCYCNDDASNWLAC
LPMAEYWYNTCFHSAIHTTPYEALYGRPPPLHLPYLPGESASAEVDMTLVNRELKLQLLKHHLLRAQLRMKQQADSHKSD
RQFSVGDWVYFKVQPYKQATISHHSSHKLAAKYYGTFQIIKRVGPVAYTLFLPSSVKIHPTVHVSLLKRCYAVPSSISCP
PTVDLANPNCPGPESVLQRRLVKRGNKAVAQVLVKWVGLPADVATWEFATVLKTRFPSFDP
>Gypsy-8_DAn_gag#LTR/Gypsy 736-2253  [Drosophila ananassae]
MSVRRSPENSSRLAIESVQCSICNDTNAEIDFVETPCQHRFHRTCVTSWLLQNETCPNCRQPCLSSQLNDSTRRAQDTTL
EVPRVQNGSNPNSRTGAVPRSRPNTRPTTRSTATISNNRPSTSSQPQRSPRAGGSQRTTSISEGRIQELITNALEAYQTQ
LSSTLSEQISLAMQNLNIPTSQRQSLEWDVELPPADPLQSQPFDSHLSGNHNISANRSLENRRENHPIRPDQISSLIVHW
KLQFSGSPKDIFVEDFIYRVNTLTRRSLNGNFDLLYEYANLLFVGPALTFFWRCHRSSEEMNWRLLCSRLRERYKDQRSD
QDIRAVMRRRKQGNNECFDDFLDSILAIADALSEPISDSELVQTIRNNLRSDLGHDLLHIETPTIAALRRHCHLHEEFFN
NLRAKTSSRYPPIRRNINEISLDEEIEESLQGNQPQISAIRNENRTKCWNCDTLGHRFKDCPKPHRVFCYGCGAINVYKP
TCPNCSQKSGNFQADNRANPRTDARL
>Gypsy-7_NV#LTR/Gypsy 160-4209 [Nematostella vectensis]
MPATGESEETPPAPPPAASSFQPGYAFKPPEPVKLAKNGVESWKIWKQLWQHYCIVSNADSHSPQFKKSLLISTMGIEAL
QIYNGCDPAETDTAKDILTKLDAHILGETNETFERYKFNTRVQKPDESIDSYVASLKTLAETCNFCECLKTSLLRDRVVL
GVKDDHTRKRLLQEGKLTLQKALDICHSYEKTSDQLKIISGKEEEVHRLNINKQKTKGASHGQRNKPVGNGKPGGTNPRQ
AAKCKFCGYSHTLKKEFCKAWGKRCNNCKAPNHFSSCCPSLGGKKQVHTVGDGSDSDSSAEMVCPVISESINSVSSGPLY
AEMCLKDGRRVKFQVDCGATVNVINQKYVPQNTQLQESKNTLNMYNKTTLKPVGKCRIITINLITKKKYNVMFEVVKEDL
TPLLSRKAAEQMKLITVNYDNFKQVHVVADGFTELVTEYKAVFDDTAVGCFSGKVNLKVDGNAVPTQSPPRRVPISVKPA
LEKELDNLVKLGVLKPVTEPTQWCSQISIQKKKNDQLRICLDPRVLNEALQREIYPLPTIDDILPELANAKLFSKFDLAH
GYWHCELDEESSYMTTFITVNGRFRWCRLPFGLKVSSEIFQRKLMESLSGLRGVVCVADDILVYGHSEGDHDEKLRNLLD
VCARNNIKLNHQKSVFKTTEVEFLGHVVTSEGLKPDMKKVEAILKMENPTDVEGARRVQGMVTYLAKFLPQLSTVMDPIR
RLTRQDVEWEWSEEQDHAMKEIKRLVTTAPVLAYYDPDKELVIQCDASSTGLGTVLLQEGKPLCYASRALTTTECGYAQI
EKECLAIVFSLERFHQYTFGRKTIVHSDHKPLEMIVRKPLHKSPKRLQGMMLRLIQYDIEVVYKKGKEMYIADTLSRAYL
PDDTEHKDSFAKINAVGHLRIREERLRQLKKATETDDTLQTLKSVILKGWPDSRQELPTQVTPYFSYRDELTLHDGLIFK
GERVIVPESMRKEIKDHLHISHLGGESMLRRARECIFWPGMSAEIKQLASVCDACQTFAKAQQKETLITIEAKAPWEIVG
VDLFSWNNKDYLLTVDYFSGYWEVDLLKKTDSPAVIRKLKQHFSRYGVPVQLVSDGGPQFDAKEFEDFAYEWDFEHNLSS
PGHPNANGKVESGVKAAKAMLSKCAQDKTDPQLALLEIRNTPTQGAGSSPAQRLLNRRTKSILPMTDVQLQPRGMDFLKE
DRCRLKLEQQRQCKNYNKNAKDLGILEEGDTIRLKPFRKGNKKWEKGVVVRRLDERSYDIETPSGKYRRNRIDLRKTSET
QPELSSRKPEVVLPPAEMESSTTTQSPETPAQVETPNAVAEEQTPPIIPIRRSSRTTTQPSYLRDYVTS
>Gypsy-5_NV_pol#LTR/Gypsy 1265-5394 via tfasty with Gypsy8_DR_pol, 1 frameshift. [Nematostella vectensis]
MGQSEVLNNSDSPPPVGISARELPSDLVGEANECVAFADGNAGLALLDTGSQVTSVSESFYKRYLLHRAVRPISDLIRVV
GAGGQDVPFIGYISVEFYFPVEEIGTNETFETLALVVPDNEYNSRVPFVIGTNLSLRCRRSCQMAQGKLFPQNARISATW
MCVYRSLKQFAKVFGEETDGRMTIRSASRHSIKVGPQETVCIWGVAPSMPGCNVKVLIETGAGRSNSMGLSATPSLISLP
GKGTKCRVPVELTNNSTQPITIPRKAAIASAQVVQGVVEHRSVGDHGSTTVIEVDLSDTPLSPAQKARVQSLINKMSHTF
AMHDKDLGRTDAVKHTIKLTDDIPVRQPHRRVPPGQLEEFRSAIEDLLESGTIRESNSPYASPVVLVRKKDGALRVCVDF
RQLNAKTVRDSYPIPRITETLESLQGAQWFCSLDLQSGYLQVEVEEEDKSKTAMTTPFGLFEFNRMPFGLTNSPATFQRL
MERCLTGLNLNICLAYLDDVIVFARTFEEMLHRLEAVLQRLSEFGLKLKPSKCKFFQTELTYLGHVVTREGVKPDPKKVE
ALEEWRQHPPTNAKDLQTFLGFAGYYRTFVERFSVIAEPLNELLREEAGTKRQFVWTAECQGAFECLIDRLCSSAVLAFP
DFNKPFVLHKDASGEGLGAALYQLQEDGIPRVIAYGSRSLSAAERRYCAYRREFLALKWAVTEKFHDYLYGRQFHVITDS
NPLTYLLTSAKLSASDHRWLSALSSFDFTISYRPGKSCGDADGLSRMPQADNSCSPPEASREDFLRPFLDRLLPVGAQPE
VFSLDELQVLCDAHVATPPPLCQQQQSAPSLVVTPAEWSRRQKEDPVIQKVMHAVKTNKQPTQTTSREEKAAVQRIWKEK
DRLVIRSEVLYRRRIVEEGESFQLVLPAAYRGLALKGLHHDCGHLGRDRTLDLVRQRYFWPGMAADVTSYISTCDRCIKR
KSLDPPRAPMVPMIATAPMELISIDFMSLEKGKGGYEHVLVATDSFTKYTWAFPTRNQKASTVAKILWERIFVSYGFPQR
LHSDQGRDFESRLLTGLANVEKSRTTPYHPQGNGQTERFNRTLLNRLGTLEVDKKKGWPDYVAGLVHAYNATKHSTTGYS
PSYLMFGRNPRLPQDVTLGPDPVHDPQPYAAYIENLRDKLTDAYSRAQQEIEKKAEANKRRYDALSEDLALQPGDRVLVR
NLSTRGKHKLQDRWEDVPYRVVRRSGEQPVYVVQQEQSGKKRVLHRNILLPYRAERAGPEPRKQHGRKDPPRRQQEDDTE
SSASDSDSSWSDFVATELNPLAVPFTMDAEGEEPEVHIQQEYDNDVQESESGGEAAEKRPDRLRPRRVVRPPARLICDPV
WSQQVSTLNYGITILP
>Gypsy-3_NV#LTR/Gypsy 26-4048 [Nematostella vectensis]
MATYGKIDEFDRDSDSWEQYIERLNFYFEANGVTTSDDDLKIRRAILLSSVGKKTYKLMSDLLAPAKPGEKSYADLCTLV
KSHFNPKPSESVQRHKFNNRFRLSGENVSDFVAALRNMAEYCNFGGSLENMLRDRLVSGINNERIQRRLLSEENLTFKKA
YDIASSMETTAQHMAELQSAPSTLSSTSASVKKVSSSPLPRSKSENKECYRCGKNHHPSKCRFKEATCHYCKKKGHIVAK
CLKKAKKSSETTKPNSNHHPKQGKPAIHVLDTDKEIEDEDIYPLFAVSQGNRQNPYLVDVELNGLKVQMELDTGASLSVI
GEDIFDQLKNIEGSSLNLQDTKLTLKTYTGETIPVLGKLVVEVKYKDFFEHLPVIVVQGKVPSLFGRDWLQHVKLSWPEI
FLVQVVSPDVSDLLKKHENLFKEGLGTIQGVKAKIYVDPQAKPKYFKPRTLEYARRQKVERELDRLLEEGTIRPVQFSEW
ATPIVPIVKSDESIRICGDFKVTLNQVSKLDNYPIPKTEDLLAQLGGGVQFTKLDLSQAYQQLELDEESKKYTTITTHKG
LFEYNRLCYGIASAPGIFQRTMENLLQGIPNVVVRIDDILIAGKTSADHLKSLTEVLSRLDKAGVRLKRSKCIFQAPEVT
YLGHRIDKDGIHPLDEKIKAIQESPRPSNLKELQAFLGMLNYYACYIPNITTILSPLHQLLVKDTPWNWSEAHEKSWNQA
KSTLHSSQLLVHYSLERELTLACDASPYGLVCVISHVMDDGTERPISYASRTLSPAEKNYSQLDKEAAAIMFGVRKFHSY
LYGRSFTIYTDHKPLLGLLQSTKQIPTSASPRILRWAVFLSGYSYTLVYREGQKNGNADGLSRLPLPNETRNVPVPGDIM
FVMNHLEVNTPVKVKDIERWTSKDPILSAVRHQVMSGWPNSNDRIEFKPYSDRKHQLSCQDGCLLWGSRVVIPPQGRVKL
LQELHDGHPGMVRMKMLARSYFWWPGLDADIEQKVKDCTSCQSNAKAPSTAPLHPWEWPSRPWSRIHIDYAGPFEGHMFL
VIGDAYSKWIEVFKTNSSTAAVTIQKLRECFSVHGLPDIIVSDNATAFIGEEFALFMSENGIKHITSAPKHPASNGFAER
YVRTFKETMKKMGGEKENLDTKLSRFLLSYRTTPHATTGKTPGELLMNRKLKTRLDLVNPLSQDTIRTRVEDKQLAQKKQ
HDNLVPLREFQVNDPVFVKNFSYGPKWLCGTIIQQSGPVSYVVQLSSGGVFRRHVDHLRLRTSTPTVANDLQSSTELAQV
PMQTTVPKQIPEEFKEPEITVPEPSLEPKKTELPASEPASTLRRSTRLKTTPTHLKDYVC
>Gypsy-3_DKi_gag#LTR/Gypsy 1388-3010  [Drosophila kikkawai]
MTQPIAILPRVRPKLHFSFIVYRIHLERPVCFRYIVSYLILPYLISFFCFIFRKASKMLTHSNENLVDLQTDESANCIIC
NGPVCNLDLLEARCKHSFHKLCLDNYSKNNDKCPRCGQTFSQPEVGPHSAPLSRSQGHKVQTRSASRNAAKQNGGSEQNS
LQEIRSEGNSDSRVVTEDHVEKLIQKSMQTFQANMLQSVTEQITLAFTQLNRSTFANNGQGEPQRDFSRDGSDANSDRNN
IQQARNSPDFRSDRSDLSLDRPDRISNIISNWRIKFSGSANDIAIEDFIYRVNCLTSQCLNGNFELLSHFANLLFAGPAL
AFYWRVHRSADNMNWNLLCGRLKERYQDQRSDREIKCAMRRRKQGNTENFDDFLDAMLSIADSLREPMQDSEIAVEVRHN
LRPEIKHELLHIDTPNLATLRKECHRHEEFFLNTRTKPIQRSNPSKRFVNAILQEEDSESQSEEEREVEDEICVVKTAEK
IKCWNCEETGHSYHNCLKPRRIFCYGCGTPEAYKPNCAKCNSVSENPKKDIRYAKKTDVRR
>Gypsy-4_CP#LTR/Gypsy 871-4056 (C-terminal 250-400 AA missing) [Carica papaya]
MEPQGSERTSKDQEFILKAMQQQFERIQLAIGNMNEKLEKQQRELNSMRGEASQTNPRARRLPTPPFDEEVEEEFDDQAT
LVNEGRNYGRGRNDLDKNIGSIKMKIPSFLGKNDPNAYLEWERKVELIFECHNYSEEKKIKLAAVEFGEYAIVWWDQLIT
SKRRNGERPISTWAEMKAIMRRRFVPTHYYRDLHQKLQGLIQGNKSVEDYYKEMEIAMIRANIEEDREATMARFLNGLNK
DIANIVELQHYVEIDDMVHMAIKIERQLKRKGNTRQANTYSAQNSNWRPNWRGDNKAVQFKRDDKTKPKDANDNKNKGIS
NSQTPRNRDIKCFRCLGFGHIASQCPNKRVMVMRGDGVETDDESDVEDEMPPLEDCSDGETPMEGRLLVSRRALNMQVRN
DDEGVKLQRENIFHSRCLVNGKLCSMIIDGGSCVNVASTLFVDKLGLETTKHPKPYKLQWLNDSGEVRVNKQVRVPFTIG
KYSDEVICDVVPMQASHILLGRPWQWDRRVMHDGYLNRYMVGKEGKKYTLLPLTPKQVFEDQMQLEKSHDEFAEKEREMH
STIEKNEGKKMSFYAKMRDVRKALFSNKPIIVLMYKEACFSTNELDPSLPSVVVEVLQEFSDVFPDDLPQGLPPLRGIEH
QIDFIPGAAIPNRPAYRNNPEETKELQRQVEELLQKGHVRESLSPCAVPVLLVPKKDGSWRMCVDCRAVNKITVKYRHPI
PRLDDMLDELHGACVFSKIDLKSGYHQIRMKPGDEWKTAFKTKQGLYEWLVMPFGLTNAPSTFMRLMNHVLREFIGKFVV
VYFDDILVYSKSIDEHVVHLRQVFDTLRKFQLYANMKKCTFCIDRIVFLGYVVSAKGIEVDSEKVKAIQEWPTPKSVSEV
RSFHGLTSFYRRFVKDFSAVAAPLTEIMKKDKGFVWGKEQEHAFSLLKEKLCNAPLLRLPNFDSTFEIECDASGLGIGAV
LMQDKRPIAYFSEKLNGAQLNYSTYDKEFYALVRALETWQHYLLPKEFVIHTDHESLRHLKGQGKLNKRHAKWVEFIESF
PYVIQYKQGKENVVADALSRRN
>Gypsy-5_DWil_pol#LTR/Gypsy 3143-6826 via tfasty with Stalker4_pol, 1 stopcodon. [Drosophila willistoni]
QCPSSTRYYYEKLPDTSRYSALNKKIYTVNLSLNNFVLFKNVSTNKNLTFLIDTGADISIIKENTDVFHDIHTNKIIDIR
GIGEGIIKSKGLASIELQTDKYIIPYKFHILHEDFAIPCDGIIGLDFMKRFNCQLDYNSSEDWLIIRPPNLTYPIYVPIT
FNSGNNSTLLPARSQVVRKIELSSAEDNILIPNQEIKPGVYVANTIATAQSTFVRFLNTTDKCQIVGVNNIKFESLSNYD
IVQNTKDIRKESVIHKLRKRVPILFKDKLEKLCTGYSDVFGLDTEPITTNNFYKQKxRLKDDEPVYVKNFRSPHSQLNEI
QRQVGKLIEQGIVEPSVSPYNSPLLLVPKKTLSGSKEKNWRLVIDYRQINKKLLSDKFPLPGIDDILDQLGRAKYFSCLD
LMSGFHQIELEEKSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGPEPSQAFLYMDDLIVIGCSEQHMIKNL
VDVFKLCRKNNLKLHPEKCSFFMHEVTFLGHKFTDKGILPDDTKFDVIKNYLVPHDADSARRFVAFCNYYRRFIKNFAEY
SRHITRLCKKNVPFEWTAECENAFQYLKEKLVQPNLLQYPDFSKEFCIITDACKQACGAVLTQNYNGLQLPVSYASRAFT
KGESNKSTTEQELAAIHWAIPYFRPYIYGKHFTVRTDHRPLTYLFSMVNPSSKLTRMRLELEEYDFTVEYLRGKDNFLAD
ALSRITISDLIDMNKRILKVTTRYQSRQNNFCAENKQELLPRQNLEKASKPNVFDVIVNDEVRKVVTLRITDSSTTFKHG
RKVIARIDICDIYTNGILDLGQFFQRLKKEAGILSITKVKVAPSEKIFETISIESFKNMGNQILQFLRVALLTPVTLIQN
DEEKEAILSTFHEDPIQGGHTGINKTIAKIKRRYYWKNMTKYVKKYINKCPKCLTSKTTKHTRSPMIITETPQYAFDRVI
VDTIGPLPRSENGNEYAITLICDLTKYLVAIPVANKSATTVAKAIVESFILKYGPMKTFITDMGTEYKNSIINDLCKYLK
IDNITSTAHHHQTLGTVERSHRTFNEYIRSYISVDKTDWDIWLQYFVYCFNTTPSVTHNYCPYELVFGRQSNLPIQFNSV
NTIDPIYNIEDYSKEVKFRLENACKRARILLEKNKIKQKEINDSKVLDFKIEIGDQVYLKNETGHKLESSYIGPFEVISI
EKNYNVVIKNRKNREQKVHKDRLKRNNK
>Gypsy-4_DAn_gag#LTR/Gypsy 909-2342  [Drosophila ananassae]
MGLDHSDTEEASASTEVCTLCRTRTSSTEWFKTKCGHSFHRSCIKTHFAKDRSCPVCKASCQGESVGRPDNVAQHTRQKQ
RVASSQVESVEQRVADMEGRGQTSSRESMESMLQDAVKRMQNELLTQLTEKMSLLIHSNLAGWSQEAPRQGVANASPSFD
HLLRVDAGQPSEVQEPVNPNYSPRSNLSDLSHRPDKVSHIMNGWKLRFSGAEGGISVDNFIYRVQALTCQTLGGNFDILC
GNASALFEGKADDFFWRYHKSVRTVRWNDLCAALRRQFRDTRIDVDIREMIRDRKQKERETVDSFYDAVVQLTDSLEDQM
EERELIEILRRNLRPEIRHEILNISISSMSRLREICRKRECFLEELKKEQVYKKGPPFKSHVSELLEDSHDPTESEFFDE
REGTVEAISLICWNCRKEGHRYQDCTATRKVFCYGCGARNTYKPSCQRCLKNIQQNTQVVRSRTVLKAQGTNTENLEV
>GYPSM1_gag#LTR/Gypsy gag-like part of much, much larger protein encoded by ORF 3929-18547 [Schmidtea mediterranea]
MTTSINSNMTSIPDANTMLNNNNVIVGEFREKFRGEPFDGSLNKLDTFIKEFEVYKNICHWTDQKVKERLPLYLKGSAQD
VFVEEARDVTKLTTWTEIKEFLIKIFGIEKKGNRKILDFLHRKQRRDESNAVYACELKKLCKEAFGEADLPEDKMVDVFI
RGIKREDIRANLGCLAPETLDKAVAIANRCEAHLGLGYQVAVLATEPTTSTVNANNQNNNTNPAMNQFIPRAQQMFKPPA
TRNPEDRGNNQVSYNNNFRNNPNANEKCSTCQRMGHRSENCFRNYNCQKCGRRGHTEKICRQLNSKACYNCGQQGHIARR
CNIRGEPNQSRPNNNPMGNPQINVMQEIDMLRETLQRMPMELKEMMQQMPTNIQQ
>HERVK11_gag#LTR/ERVK 156-2264 [Primates]
MGHAESKHYAYLCYIKLLLKQGGVRVPMENMVTLFRAVEKYCPWFPEKGTLYVELWDHVGSTFRELVPAGNYVPVTVWGD
WALVRAVLMTYQSRDPLQLPQFSESGDPPPLPQLSSPTRPSLSAQPLPSPTPPPPNDTEDSMSNSGDFGLTSPPDDLISF
HEELVLVAPAAPTQTARDHIYANSSLFKPLQSLPPEPPNGSRTKLQFTCNSAGPPPSTAAPHPPVVSVPQPVTLPSTQPA
SLYPSSHMDTSNHQYASASSAPPMPLSHTLIPVRPPQPQFPLSTHTFPVTSMPTPSHVPALETSMQCLLRQNKETSGLEV
WAYPVTLEPPNAQGVQMRRYAPLNLTFLKEFKDACTQYGPTSPYVKMVLQTFCTEVILLPLDWDLLAKAVLTPSQHLQFR
TWWSEEARLQAQLNRTNGILITQAQLTGSDSFSDTYAQLGFDALTTEQVTKVCMRAWDKLRAPGQAPVSFTTVKQGHNEL
YPDFLAKLQDAVEKSVSDERAQGILLRMLAFENANHECKMAMRSVQRQNLPDHEVLPAYIKACEGIGSETHKAILWARAM
KDANQTGSTNSFLGACYNCGQLGHTRKNCTVKNLKAAKPAQQTRPNAPATVCPRCRKGKHWASTCHSKSDIDGNPLPQNQ
GNGKRGQSQAPISNGTPQTQTNVAFPLQAVPTQPPAQTNLPTANPDGSQPLLLSQYNACLPPQ
>GibERV1_gag#LTR/ERVK 127-1875  [Hylobates]
MGHSGSKERALYIQVLQSMMHARGASIKTKQLEKFLETVQEACPWFPEEGTINMDTWSKVGEGLRKHYTLHGPDGIPVDT
FGLFNLVQECLVPCPEAYKPFSSPPEDLPPPPPSAPEEKLVVCHQPSPRDEKLSCEETEKLPLPTSPASPLPSPGEDEEA
LVRAFAATFIKKPPGAPNACLPPLKLSTLPATVMSPLEGALHQARMSGETLEGFHAFPVRLNPQNQQQYHEPLPFKTLKD
LKAAVVQYGTTAPFTLAMVETLAEDALPPNDWKGIAKACLDGGDYLLWKTEFLEKAEEISRRNRLAGNQVTYEMLAGLAN
FSDTANQIGWERWIYDQVSNIALSAWKKLPSSKRTEELTKIRRGPDEPYQNFVSRLLQAVGRVISDSEAGTVIVKQLAFE
NANGACQAAIRPYKKNGTLEDYIRLCSEIGPAFNQGVAYAAAMKGVPVSQIYLQVQGRGQNKRLQNKGGNQTCFNCGKPG
HFKNQCRHTPASSGKSPKARPTSLCPRCQRGFHWMNECRSRTDSQGNPLSPQGNQKWASPRARQTIGALQTVPPVTSMSP
SNPFREPPQGQQDWTCVPPPATY
>HERVK11_pol#LTR/ERVK 3037-5766 [Primates]
NYYKRRQGWFRLSFLVAAAATPPDPIPLQWKSDTPVWIQQWPLSKEKLEALTQLVSEQLQLGNVEPSLSPWNSPVFLVKK
KSGKWRMVTNLRAINAVIKPMGAVQPGMPAPALIPKNWPLIVIDLKDCFFHIALHKSDCEKFAFTVPSINNQEPAARYQW
KVLPQGMLNSPTICQLYVGQVLSPVRAQFPQAYILHYIDDILIAAPTDKELIDCYQILSRCVTEAGLHIAQDKIQQTTPV
QYLGMVVDKQRIQPQKVQIRRDSLKTLNDFQKLLGNINYLRPTLGIPKYALSNLFSTLRGDSNLRSLRTLTPEASPEREF
MEGRIQTAQLSRVQPFQPFQLLVFASLHSPTGLIVQHNDLVEWCFLPHSVSKTLSVYLDQLAILIGQARCKILEISGFDP
NLIVVPLNRLKIQATFQHSVLWQIHLADFIGVIDNHYPKNKLFNFIKMTSWVVPRLTKDQPIPEAITVFTDGSSNGNAGY
VGPTDKLISTPYTSAQKAELIAVITALQDFPKPLNIVSDSAYVVHATKNIETATIKHIDNSELASLFSRLQQVVRQRRQP
FYIAHIRSHTTLPGPMSAGNHKVDCLVSFATQEAQEFHNLTHVNAAGLKDKFALTWKEAKLIVHSCSQCQVFVLPNQEPG
VNPRGLTPNDLWQMDVTHVSSFGRLSYVHVSVDTFSGFIWATCQTGEGMAHVKKHLYSCFAVMGLPRQIETDNASGYVSK
AFDLFMQQWRISLITRILYDPHGQTVVEWANGTLKTQLELQVCPTKHNLTTPHSQLHLALFTLNFLNVPKNNTLTAAKRH
YTGKKFSLNEGKPVLWKNSQTNTWEPGTIITWGRGYACVSPGDHQSPVWVPTRRLKLRVNTDNENHREKTSVSETALRRG
EICANSSEAGTPNQNGSDSILPDGNGDPSN
>HERVK22_gag#LTR/ERVK 159-1616  [Primates]
MGQQLSAQQKQYIKVLKQLLKASGASVSQAQLRDLMQTVVSHNPWFPEEGTLDVELWEQVGRNLKQHHAQGQRVPVTSLT
LWALVRAALVPLYTEEPKKGREEEPSPTLPPPRPSAPLSPGQNNKEETEVLPEPPPPIDWKKDRGYATAMGPCLKQAALE
GELLACPVMQDRQGNQVYEPISFNAYKELRKSIKENGAASPFMKGMIEAMADNFCMTPWDWSVLAKTTLEPSQYLLWKAE
YDELCEQQANQNQVARQDITAAMLQGRGPHADVQQLDFDPQAYAQVSLCALRAWDRIPESGVQQGSFINVQQGPQEPFVE
FINQLTQAIKRQISHAQAADILLLQLAYENANVDRQQAMQAIRGKAATVGELIRACQLVGTETHKAKILAMALRPPKVKR
ERNPNCFLCGEPGHMKRECPNNRDQGNSGKEPPSICPQCKKEKHWANQCRSKFDKNRNPISNQAGNFMRGWPQAPLKTGA
MPAAFL
>HERVK14_gag#LTR/ERVK 149-1798  [Primates]
MGQSESKHSAYLNFLRHLLRRGGVKVSTQNLLSLFSTVKQFCPWFPEQGTMELDEWERIGRDFKKAYKDGAKIPVSVWSM
WALIKAALEPFQTDDEADSDEEEEDECKKLTSDSECEEQQPEEIKEKKGKLKKVCFTSPSAPPAELSEWPPPLSPLNGRE
NELAEKLTAPVVATLKPGAIGGAIQNSIQKARAEGDLEAWQFPVTIIQQGGQNIANWATFPFKLLKEFKQAISQYGPNSP
FVQTLLKNVALDNRLIPYDWDTLTKSVLTPSQYLQFKTWWADEAQTQARENTQAQPPVPVSFEQLMGVGPNWGRLENQAV
MEDVAIVQLCSVCLQAWERINVTGEKYPSFSSVRQGPKEPYIDFIARLQEAVYKAITDKTAQDVVIQLLAYDNANAECQT
AIRPLRGKAHLAEYIKACDGIGGNLHKATLLAQAMAGLKVGKNMPHFSGSCFNCGQFGHTKKECRKGNQKAKTTTINQQK
SPGVCPWCKKGNHWASQCHSKFSKDGQPLSGNXKRGPPRAPQQTEAYPAQPVPLQMYNNCPPPQQAVLP
>GGERVK10_gag#LTR/ERVK 329-2059 [Gallus]
MEHVLKVLLQFCKDYCGKNAPSKKDIHAVISRLEREGEIKAPQEIFDHRRWDDLTSALAQHIMSAQKGGSELKTWGLILG
ALKAXREEGKVXEXARRLWGLDQADPGGGSQGVSSDAKRGCRPGVSLSCRNPDEERSTKMAPGDPXTPXQTXGDKQQDGG
LQPSAPLSGEDTLSQELESPPPYPRQPLYPSLQNFTPPIGAEKGVEEKGGGTPAPXQGAESRDYTPPEGAGGRRGTDWQG
IKXAAEEKGLVTAFPVVIGEEGPEWTPLDPKGVTRLIEAVEKKGLRSPLTXNALEAXTEPGPMLPYDIENLMRMVLKPVQ
YTLWKEEWLTELKRVVAAAQDDPGHPVHGTDMLRLTGSAAGMATPRAQXAQLRPGELLATTDAAMGAFRKFARSAEPSTP
WSEIAQGPTESFQEFADRLIKAVEGSDLPRAVHGPVIVDCLKQRSLEDVKTLLRAAPGKISTPGEVIRYVLDKQKXTPLT
NEGLAAAITNAMAVXSRPPRAAEPSRGPCFRCGQFGHTKAQCXAPVDXERGGPCFRCGQFGHIKAQCRAARYGERGRVTC
QLCGKGGHNARQCRSVR
>ERV41_MD_env#LTR/ERVK 5212-7106 via tfasty with ENTV-2_env, 1 frameshift and 2 stopcodons. [Didelphinae]
LFVYFLQVLQHLFGFQKDLRVLAMTPSPTTSHVTHPSRKARRKAMRRLTYKLKRMQXQRDCAKTTTQAALPTWGQIKRLA
AQAEERVDKQGFXPPDRTAALFVAMLALLSAPPSTSADAYWAYMPNPPFVQPVTWDFPLPPPTSNVSYFHLAMPLERPVQ
GNFNFSAQTKTPIICFSLTSQPGCVQWAPDKPLYTLSVNKSLMVTSYNDNFWNVPPCSIHLPDRAExRLxQFLHPGGTTF
WGTPCRNIITSFVFYQCTYTPPRGLHVPNCPHGSFFDWSLPGSTTNASIQYYNPQGYLLPTIQYKNTTHRYLWASLMALT
PLTSSWLNISSLTCLPSPYMYLIGNINITFGEFSFYYDCINCTLSNCLFPGLNASKILIVRQPAHILILVNISTPWYHSR
GAYMIQQIQYELMRAKRGIGLLITTIVSLVMMLVSTTTAAIAIXQEIQTASYINNLTVNVSNTRHXQEQIDLNIESKLDI
LENNLLWLGDRVQSITLRQQLACHADYTAICVSPLSLNESAWDLTKHYLLNQWSKFNDTGFLEQLHIDILQISQSHLDNL
PPFHPTDFIQALKRIPLGLPHLLTIGAIALLAFILCLALPCIIRIFMASYGQLRTASHHLKLQLQQLKKGET
>ERV17_MD_pro#LTR/ERVK 1671-2405 [Monodelphis]
VGKRAGGPSGGPYKQSPSLPCHVPDLSRLGKTSSSFSVHRSALSGIEGQEQDFPIRPEKPVLLLPFENLKVWGIGIPMAG
ELCSAVSNVDVMPEKITKEMWQDSKIQLTLTNLIGTLIVIQDVLAFVKSNTTVCWTERVSQHRPMLIVEIEGISIDGLVD
SGADTTVLSMPDFKSIPWSGSIVEVPVTGVGGVTTMGKTSSPLSWRCGNSQGLITPLVNAKLDTTLWGRDILQGMKCIIS
TDFS
>ERV147_MD_gag#LTR/ERVK 230-2017 [Didelphidae]
MGHSESKERKLFTGIXKHTLLKRGVKVSKAQLTKFLDFIQICSPWFPDEGTXDLHTWERIGLDLKAYYXDNGPEQVPAET
FSLWSLFRDALDPTHEAXRLGQTLPNLSATEKTPLLSGQKSKTEVFRIAXSGHGPGGEEGXEAKRXISSGEEXXLESQAA
KYKNPDWDFPVQXRPPPTAPPPPKHSXSPKGGRSRWRGMRLPLPPPRSVGFRGAVENAXKXGDFSFCLPVIYXGEESEDE
EPRWEPLPYKMLKEIKTACASYGPTSPFTLTLVETLAGKWMTPGDWTQVAKACLSGGNYLSWKAEYDEXAKKEAANNKKR
GNRITKEMLXGEEEWINYADQVKLPKKALYQVTTCALEAWRKIPVSKGXTSGLANIKQGSEEKYADFMDRLIQQVKRTIL
QDDAAXLMIRQLAYENANSTCQGMLQSVKRTGSISDFVKACEDFTPSYVQGVAIAAALQGKTYTEMIRNPRXGKECFKCG
KXGHFSKXCPENGXKNPQPTTGLPRTPCARCXKGFHWSKDCRSKYHRDGHLLPSRTPQNGXQGNWRRGPPQAPQNKEAAV
GFSQKNPFXPQQSAPYTEQLPGARDWISAQAPISY
>ERVB5_4_RN#LTR/ERVK 5653-7698 [Rattus]
MKSREESLPEIPLSFSLHRLRKMDHSLSRLFVLLLSLMSTYGANSHRPLNLTWLVINGEDDTVWSMSKVTHXNSWWPSLH
PDLCKLAMGAPANWDLEGYYDLQKAPSSPSPPGRHGLDPWGGCGAKDRRSMLRTLPFYVCPGFHRDRALNHRCGGKAEYF
CHNWGCETTGDAPWNPSSSWDFIKVTANYTHHKSGSPGWTNIEECSGWRHPLHIQFTEPGKKYTLWTSGVSWGLRLYKER
HDDGATFTIKLQTNLPGADKPVMPIGPNLALNPLYFSGKLLKPSPTTLAPSPLPSATHLPPNXIYEPNXHRFILDIVNQT
FFVLNHSRPELTKSCWLCYHSDPPFYEGIATSXNVSGTDDPSLCRWHQQTEAKLTPSAVSGQGSCVGNQIPSTXAHLCKE
MIPIPSSSKYLLPSNDTRWACSDGLTPCIYTPNLINNATAFCVLVQLIPRLTYYTANEFAQMWDPVTDHALLRTKREVIT
AVTLSVLLGLGAAGAGTGITSLVLSNRHYSDLRQAVDKDIRELEIGITNLEKSLVSLSEVVLQNRRGLDLLFLQQGGXCA
ALKEECCFYTDYTGVVRDSMAKVREGLELRKKQREQEEGWFRSWFFSSPWLTTLLPSILGLLVGFFLLLAFGPWAFNRLT
GFIKRQIDSLASKPLQVHYHKLDLADRGLAEPCDDISPLGAA
>ERVB2_2_RN_env#LTR/ERVK 5082-7096 via tfasty with MMTV_env, 1 frameshift.  [Rattus norvegicus]
MPNHQFGSQTDSSGQPKETDIRPPRQKRPNRRIMRNLAKKIKATRLEPKIKPRQTPTWTQLKTLTAQAKEVLKAAHAPET
ATLLFVAMLAVMSAPTALGESCWAYLPKPPILHPVGWEVSDHIKVLTNQTLVIGGSPDFHLLKNSSGYVDFEGKSDSLPI
CFSFSPSVPVGCFQVGKRVFNTDTPTLDNTKLDGKGNGRRMWELWMTTVSDKEEKRQHYTTAKNLPPRYPHYRTTFKKDA
LWEGDENAFPRWLPCAFPDNGVRFSPLGAAGLLWDFSMSSPDKDQNNYLSTNSKLYGNYVPPVGKPIKRWYDAGWVEPTW
FWEPLHTDLPDRQNKPLIEHPELFRLVASSEKLLLKKPGARDYDAVSVSACVTYPYTILVGLPQLINIDKVESIFSIKCT
SYKLTNYIDSTVSGSVILIVRRPPYVLLPVDLGDEPWFDDSAIQTIRYATGLIRAKRFVAALILGITALIAIVTSFAVST
TALVKEMQTATFVNDLHKNVTLTLSEQKIIDLKLETRLNALEEVVLELGRDVTNIKTRMATRCHANYDFICVTPLPYNAT
EEWERTKTHLLGIWDDDNISYNIQELTSLITEMSKQHVDAVDLSGLTRSFADGVKSLNPIDWTQYFIFIGVGILLLVVVL
MIFPIVFRCFTDSIAQVQTDLNLVLLKNKKGG
>HERVK22_pol#LTR/ERVK 2343-5055 via tfasty with HERVK_pol, 1 frameshift and 3 stopcodons. [Primates]
MATVIIPPLPLTWLSQDPIWVEQWPLKGEKLQRAHELVEEQLKAGHIEPSNSPWNSPIFIIPKKSGKWRLLHDLRAINAN
LQPMGPLQQGLPSPAAIPQDWPIIVIDLKDCFYTIPLAEQDREKFAFTIPAINNERPACxFHWKVLPQGMLNSPTMCQYH
VNQALLPSRKEFPNCKIIHFMDDILPAAPTEPVLLNLYTSVVKNTQLRGLIIAPEKVQMSSPWKYLGYILTSRSVRPQKV
KLNTSNLHTLNDYQKLLGDINWLCPTLGITTYKLQNLFSILKGNTALDSPRYLTPAAKREIEEIEQAISQRQLDRIDPxY
SVQLFVFPTKHSPTGLIGQMAPGLRFLEWIFLPHTGTKTLSPYIQLISKVIYSGHRRCNQLLGYDPDIIRIPLSKKQFEA
VLPLSLDLQIALSDYAGHIEHALPADKLLQFLSHTPVVLPTKIVHSPIPNALTLFTDGSGKHGKAAIWWRPHNSLTHSGF
TSTQRAEVGALILALETFSAQPINIVSDSAYSVYLLQNLETALIKSTLEPTLCALFLxLQQLLDQRTHPIFITHIRAHSS
LPGPLAYGNDQADLQVMTSLLDQATQSHQFFHQNWRNLSKQFQLTQRLAKQIILQCPDCQLTGTSPPSTGVNPRGLEPNQ
LWQTDVTHVPEFGKLRYVHVSIDTNSHLISAHALPGESTRYVIKHLLLTFAFMGRPTKIKTDNGLAYASSQFQQFCHTWN
IQHSTGIPYNPQGQAIVERAHSTLKNMLRKQKRGNMSKDPATLLAQALFTLNFLNLNDKFQSAIEKHFAKTSQDIKPAVL
WKDVNSNVWCGPNELLTWGRGYACVHTPSGPLWIPARRIKPYHGMARTQPSTRNEENDPAGPTAPDDAASSDDTSPGHYL
GDAEEDNSGGRANPAPDTDTIHSR
>MmIAP14_pol#LTR/ERVK gi|130635|sp|P11368|POL_IPMA Putative Pol polyprotein. Contains: Integrase (IN); Reverse transcriptase/ribonuclease H (RT). [Mus musculus]
WKPRQTGSGFSLAAIGAARPIPWKTGDPVWVPQWHLSSEKLEAVIQLVEEQLKLGHIDPSTSPWNTPIFVIKKKSGKWRL
LHDLRPINEQMNLFGPVQRGLPVLSALPRGWNLIIIDIKDCFFSIPLCPRDRPRFAFTIPSINSDEPDNRYQWKVLPQGM
SNSPTMCQLYVQEALLPVREQFPSLILLLYMDDILLCHKELTMLQKAYPFLLKTLSQWGLQIATEKVQISDTGQFLGSVV
SPDKIVPQKVEIRRDHLHTLNNFQKLLGDINWLRPFLKIPSAELRPLFWYLEGDPHISSPRTLTLAANQALQKVEKALQN
AQLQAIEDSQPFSLCVFKTAQLPTAVLWQNGPLLWIHPNVSPAKIIDWYPDAIAQLALKGLKAAITHFGRSPYLLIVPYT
AAQVQTLAATSNDWAVLVTSFSGKIDNHYPKHPILQFAQNQSVVFPQITVRNPLKNGIVVYTDGSKTGIGAYVANGKVVS
KQYNENSPRMVECLVVLEVLKTFLEPLNIVSDSCYVVNAVNLLEGGWSDKPSSRVANIFQQIQLVLLSRSPVYITHVRAH
SGLPTSAPWLSGNDLADKATSGGCSLSSPVEAAQEIFITTFHVTAEHYRSRNSLTRKEARDIVTQCQSCCEFLPVPHVGI
NPRGIRPLQVWQMDVTHVSSFGKLQYLHVSIDTCSGIMFASPLTGEKASHVIQHCLEAWSAWGKPRLLKTDNGPAYTSQK
FQQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKTYLIKQKRELEEILPQHQESLSMALFTLNFLNIDVHGHTAAERQCS
EPDRPNEMVKWKNVLHNKWYGPDPILIRSRGAVCVFHRMKTTHFGYQKDSPEKSRLTKGIPDVPRLW
>MMERVK10D3_pro#LTR/ERVK 1769-2542 [Mus musculus]
PPPMGVQLVDSDFKGPLPADTVGLILGRSSVTMQGLIVHPGVIDSDYTGQVKIMVSSPRGIVAISPGDRIAQLLLLPSCH
SQFPAKEEERGDKGFGSTGTSAIFCSLDLDERPLLQLIIEGKSISGLLDTGADRSIISVKDWPSGWPRQRSEQTLRGLGY
AQMPEMSSRHLSWXDEEGHSGHFQPYVLPVPISLWGRDLMKKMGFKLTNEGPYSTQAQRMMLHSGYKPGKGLGRYLQGRL
SPIPVERKNDRAGLGFS
>PlatERVK1_env#LTR/ERVK 5160-6817 (probably extends 5') [Ornithorhynchus]
VPPCEGEQYWAYLPYPPWTRPVTWEDRLGEIYTNNSRLMGGYNYPFLSDNITAVINVSALATRTPICFYRNGNGNCTGPC
LQLETEKTWVHDKELGNIIEGNSAYVYVEKLTPKGVPTRNFTQYPRIPLCAFASHVWPGSSNKSLIPEKPIFPLWELCHL
SYPEEIQLNSHTEPTKLWNWGGHDNSTHQAPLKGYTGSFPEEVLQSPTLVEFRGLWRAFSTLDRINHTYFEAHVPLNIGP
VKSNLSFITACVRTPQAFIVGNISMVNESCYWNISCINCTLKQCIDITDNDKIIMLVEQPAFAVFPTNISHEWYSSSSEH
ALQLIAHGLSRXKRLVGLLVTGLVALASLIISTTVSTISLQTEIHTAGYVNELAHNVTLAFQAQERIDRDLLYKINLLEQ
SVLYLGTEIETLKEKLSLQCDYRYLYVCVTPVKYNASDENLSWDKIKNRMLGAWHQSKITLDMDQLRKITEEIENSPHLN
EHPEDIARIVLDSLKQLNPFNWVSVGLHTLPYIFVFIVVLLMFPLITRFLATTLKPLLTQLYELRLVNKKGG
>RNERVK9_pro#LTR/ERVK 1979-2794  [Rattus]
KGSAGLDLRSTARLVLTPRMGVQLVETDFKGPLEPGTVGLLIGRSSTALRGLHVHPGVIDPDYTGVVKIMVESPKGITAI
SPGDRIAQLLLLPSLHERFAAQSRERGEKGFGSTGSDLTFLALGLDQRPVMELRVDGKRILGLLDTGADRSIIAKKDWPS
GWPVQASSQTLQGLGYARAPDMSARQLSWRDQEGHSGVMQPYVLDLPISLWGRDLLKDMGFKLTTEYSETSQKIMKNMGY
FPGKGIGKYLQGRTSPITAQQRERNQDLGFS
>PlatERVK1_pol#LTR/ERVK 2326-5100 [Ornithorhynchus]
WTPDQSVGKRYTPANESDVNYRNPFIIMATAPQHYAEKITWLSDKPIWVEQWPLTKEKLEALEHIVKEQLHAGHIEETTS
PWNSPVFVIKKKSGKWRMLTDLRAVNNTMEPMGPLQPGLPSPAMIPQEWPLIIIDLKDCFYTIPLQTEDRKRFAFSIPSI
NVRAPAQRYQWKVLPQGMKNSPTMCQKFVSLALTPIRQKYPSAYIIHYMDDILCAHPHHNTLNELLGRLTLSLSEYGLII
APDKVQKQAPYNYLGSIVEKQRVKPQKLQIRKESLKTLNDFQKLLGDINWIRPYLKINTHQLTHLFSTLRGDPDLTSPRT
LTLEAQRELEILEEAISSATLDRIHEQEDIQGSILSTPGTPTAALHQKKGILEWCHMTHQIPNSLITYPTMVALLIQKLV
RRSIWLTGRSPTIIHQPYTQTQLTRLIQNDPEWQIVISSFSGYLDSHHMENPILQFTEPYSWIFPKITLISPIPQADHAF
TDGSSKGTAVYYIPPNITEIRHTGLKSAQQNELTAVIMVLQKQPQPLNILTDSKYCFQVASKIETAKLKFSNTSDIFPLF
LQLQRVVQERKNPFFITHIRAHSVLPGPLTQGNAEADYLTQVIVMPTIVPPALHEASVSHNYFHQNAYILRRQFHITKEQ
ARQIVKSCPKCIPFSSPPTNTSKNPRGLRPNHIWQMDVTHYSSFGKLQFIHVTIDTYSSFTSATLHTGESTKHVIDHLLQ
TFSVMGIPTQIKTDNAPAYTSTAFRNFCKTFNISHITGTPYNPTGQAIIEKRHKDIKTYLQKQKGGEYLSSPKRRILMTL
YTLNFLTADVKGFTPAEKQFQQKGAQKSALVMWKDPLTNTWYGPDPLLTWGRGYACVFPETFEKPVWIPEKNVRACSSID
REAEQNEIPEEKEEAQQSHSNREDSNVGADKSTHISGDDGGRKH
>MMERVK10C_pol#LTR/ERVK 2929-5535 [Mus mouse genus]
SHCKGRQERAGFFLGATEEPLPIPWHTEDAVWVPQWPLPSEKLKAAKELVQEQLDLGHVEPTQSPWNTPIFVVKKKSGKW
RLLHDLRAINAQMQVMGPVQRGLPLLSALPKDWRIIVVDIKDCFFSIPLNKKDKPRFAFTLPSINHMEPDKRYQWRVLPQ
GMANSPTICQLYVGKALQPVRDGFPSLKICHYMDDIVICGPEEESIQQAYGLLNETLKNNGLSIAPEKVQQSNVSHFLGA
TITLQCVTPQKISIRKDHLKTLNDFQKLLGDINWIRPYLRIPTSELKPLFQILEGDSHITSLRQLTPEASDVLRKVEKAI
QTAQLTRINEQEPLCLCILRTINLPTAVLWQNGPLVWIHPHISPNKTIEHYPTMVANMAHKGIKTSITHFGKMPDSIIVP
YTVAQMQILCATIDEWAILRCSYSGLIDNHYPKHPLLHFMLLHPVIFPKVTANTPIKGAIDIYTDGSKTGVGSYVINEKA
VRLQFTPGAPQLVECLVVLEVFKRFPMPINIVSDSVYVVNAVLALETAGNFKQSSPVSEILMKIQNCILMREHPFYIQHI
RAHTSLPGPMVKGNAIADSATRDMVFLSQSSIESAKNFHQLYHVPASTLRQKFKLTRKEARDIVLRCGKCVEFVNAPSVG
VNPRGLRPLDVWQMDVTHIPSFGKLQYVHVSIDTSSGVLHASPLTGEKAVHVISHCLEAWAAWGKPLVLKTDNGPAYTSS
KFSQFCKQMQVKHITGLPYNPQGQGIIERAHRTLKQYLQKQKGGIEAMTPKMALSLTIFTLNFLKLDDAGRSPAERHGQW
PQSPNEMVKWKNVLDNKWYGPDPILIRSRGAICIFPQGEENPLWVPTRLTRTVKEQDEPQDDSPAPDD
>HERVK_gag#LTR/ERVK 144-2012 [Primates]
MGQTKSKIKSKYASYLSFIKILLKRGGVKVSTKNLIKLFQIIEQFCPWFPEQGTLDLKDWKRIGKELKQAGRKGNIIPLT
VWNDWAIIKAALEPFQTEEDSISVSDAPGSCIIDCNEKTRKKSQKETEGLHCEYVAEPVMAQSTQNVDYNQLQEVIYPET
LKLEGKGPELVGPSESKPRGTSPLPAGQVPVTLQPQXQVKENKTQPPVAYQYWXPAELQYRPPPESQYGYPGMPPAPQGR
APYPQPPTRRLNPTAPPSRQGSELHEIIDKSRKEGDTEAWQFPVTLEPMPPGEGAQEGEPPTVEARYKSFSIKMLKDMKE
GVKQYGPNSPYMRTLLDSIAHGHRLIPYDWEILAKSSLSPSQFLQFKTWWIDGVQEQVRRNRAANPPVNIDADQLLGIGQ
NWSTISQQALMQNEAIEQVRAICLRAWEKIQDPGSTCPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMA
YENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAMHKAMLMAQAITGVVLGGQVRTFGGKCYNCGQIGHLKKNCP
VLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSKFDKNGQPLSGNEQRGQPQAPQQTGA
>HERVK22_pro#LTR/ERVK 1619-2446 [Primates]
ASDGKPTVLSLRAATTGSAGLDLLCPNKLVLKEGEDPKRVATGIWGPLPPGTVGLVLGRSSLSSKGINVLTGVIDSDYQG
EILVMMECKGLHILPPGSKIAQLLLLPYWVPNAHGKERGKGSFGSTGATGVYGNQLITDQRPMITLKIGNKNFTGLLDTG
VDISIISDQNWPETWPWVTQKQKIVSIGEAHTAKQSTRPLTCCDSEGRKAVIQPLIMPIPVNLWGRDLLAQCGGSLCRPL
SNNGHCYYSSPTPDVALSRSNLGRTVAFKGREITKSP
>IAPEY3_pro#LTR/ERVK 2148-2790 via tfasty with IAPLTR3_gagpro, 3 frameshifts and 1 stopcodon. [Mus mouse genus]
PAGLDLRASTRFMLMPQMGVQPIPTDYKGPLPSGSVGLILGRASLTLQGLIVHPGVVDQDYEGELQVLCSCPQGVFSISQ
GDRIAQLIILPSLHGLFSSSGVPRAARGIGSTGNDSAYLIMSLDSRPSLELVIEGKQFKGILDTGADKSIISSHWWPKAW
PVTQSSHSLQGLGYQSCPTISSRSLSWQAPEGQTGQFTPYVLPLPVNLWGRDILQAMGMTLTNEYSPQAVQMMKKMGYTE
GKGLGKGEQGRLEPIPQEGNNGRQGLGF
>MacERVK1_pol#LTR/ERVK 2525-5323 [Cercopithecidae]
SFTTIWCLFKHSSYFFSCQKYDVQNGLQSFKLLATVHKPQALQLKWKTTTPVWVEQWPLSKEKLKALKNLVKEQLAEGHI
EPSTSAWNSPVFVIKKKKKKGKWHLLTDLRAVNTCIQPMGTLQPGLPNPALIPQNWKLMVIDLKDCFFTIPLQPQDCEKF
AFTVPEYNNGQPTQRYQWKVLPQGMLNSPTLCQEFVHRALNPVRCQFPTVLIYHYMDDILLATPDEVLQGQVFQVLQQQL
TQYNLRISSEKIQTQFPIQYLGYLLAEKHIRPQKVQIRRDQLLTLNDFQKLLGDINWLRPILGIPTYKLRHLFATLEGDS
DLNSSRQLSPVAEEELSFVENRISEAHLDYIAPNLPLSLCLFHTPHSPTAVLHQDNNILEWLFLANKAIKKIHPYIDKLA
ELIIKGRHRARQLLGADPIKIITRLSNQYIESLLETHEGWQVACAEYTGSFSQHYPSNKLFAFLQQYSLLPYNPISYTPV
KGPTFFTDASSNGKAGYWTSDNSKISHYPFESVQQGELFAILMVLQDWPQTPCNIVSDSQYAVYVTKYISQTSLPLFPQT
PLQKLFSLLFVTLTSRTAPLFITHIRSHSALPGPLSFGNSQIDSLLIGSVQRAQDEHQLHHTNSLGLQRRFSITRRQARA
IVRACPSCAPIIAPFLSPGINPRGIQQNHIWQMDVTYVPSFGRLKYVHHTIDTWSHFQWATPLPSEKADSVITHLLTCFA
VMGVPAELKTDNAPAYCSRKLAAFLSLYHIRHSTGIPFNSQGQAIIERANATLKLQLLKQKGGDGRDSPKHQILKALFTL
NFLNHWRQLQQSAAVKHFQQPLEKPQNSNLWVYYPSLQGKYLKGKVLQWGRGYALVRTGAGDEWFPSRRLKQCHGEEEPI
RRVPEGIPGAKSERSENIHLRNSTCGAPDMGTTEKVKKLKGLFNKLGSPKPH
>MacERV3_pol#LTR/ERVK 2870-5485 [Cercopithecidae]
KGVWKFLAQATDIPAPQRCADPITWKSDEPVWVDQWPLLNDKLSAAQQLVQEQLAAGHIEESNSPWNTPIFVIKKKSGKW
RLLQDLRAVNITMILMGALQPGLPSPVAIPQKYFKIIIDLKDCFFTIPLHPADQKRFAFSLPSTNFKQPMKRYQWKVLPQ
GMANSPTLCQKYVAAAIEPVRKTWAQMYIIHYMDDILIAGEIGEQVLQCFAQLKQELTAAGLQIAPEKVQLQDPYTYLGF
QINGPKIINQKAVIRRDHLKTLNDFQKLLGDINWLRPYLKLTTGELKPLFDILKGDSNPKSPRSITKEALMALQQVEHAI
ATQFVTGIDYSQPLIFLIFNTTITPTGLFWQNNPIMWVHLPSSPKKVLLPYYDAIADLIILGRENSRKYFGIEPSTIIQP
YTQSRIHWLLQNTEAWPIACASYTGAIDNHYPPNKLIQFCKLHAFVFPHITSKEPLNDALLIFTDGSSTGLAAYTYNNVV
VKFQTTYTSAQLVELQAIIAALSAFPCQPLNIYTDSAYLAHSIPLLETVPQIKHISDTANLFLQCQQLIRKRTTPFFLGH
IRAHSGLPGPLTQGNATADAATKTIATVTTDNLQQAQKAHALHHLNAQTLRLMFKLTREQARQIVKQCANCITYLPVPHL
GVNPRGLIPNEIWQMDVTHHLEFGQLKYIHVCIDTYSGFISATLQTGEATKHVIAHLLHCFSILGIPKQIKTDNGPGYIA
KTFLQFCNTLQIKHTTGIPYNPQGQGIVERAHLSLKTVITKLKGGSWYPVKGTPRNILNHALFILNFLNLDSHGKSAADR
FWHPESQKQFAMVKWKDPLDSSWHGPDPVLIWGRGSVCIFSQKNDAARWLPERLVRQINHNHCQSREDKSP
>SFV1-3_AMi_pol#LTR/ERV4 1886-4942[Crocodylidae]
VVAAGRAGGPAEKPDPSDPRPYASLIIVHPDNPSMQRKISFLLDTGAQINVITPATPHKKTSKTIMVQGLNAIATAIRVK
FWIHNHEKPLEAVLGGMNILGVPGIKTLQLKDLIFQALPFFIAEPDRHQPTLRNTSTWRYKPIPTKRHLREALVTLLQRL
EQQGCITPVAASTHLSPGWGIAKPGKPNEVRLVVDFREANKRCLPLTQPNAFTLPQCLYEMARFQGGKWYGTTLDLKDMF
FSIPIIDNSGILNMCVEGMMYRWTVCPQGYRNSPALATGAMNDTLKDFRASYPLPAEDKLKIWSYVDDLAIMGRDQQVVA
EVTRRLADHLHAKGWTVNLKKSNLQPTMDITFLGTRFTGATRSGVTHDETPELGTLEEPLPMHKKQFQRLLGHLNWYRHY
ITPHYLPILARLQRQTRDKLRKATPWTDKDRKDLRNLLHAVKNTPLQALNLTEALVITLGYTASHVWATAHNPQNELVYA
SHKALQAAQHRYGAFGKILLAERLVTLLSQGHGTLRAPAATLLPLLDATKVDSQFQGEPATWNEMVLHYHYHWCCWKCED
LPPGPDAQDNSTPTLYGTIAPAWMASDGTTRNGGGYGFYCKPCHDVGLYSAPEGATAQRNELLGFEVVIRRCLQHHDGTL
PTPIIAIDSQYVYKIVTGTATAAENLEDWERIWDLLSQFIILPLIKHTKSHKLETDPVHEIIDKLLEDPLRSDVVLVAKA
DDPKPQFDPFLTWLHEHWGHPGPRASHLRWRSTTVTPAPYGTRSDWERVSQACEACAKEKCHKTNHRVGALDARQFAPGK
VWQVDLLGPLPGAKPPNKGLVIVDLGTRQLQVIPLRKSNAVAIISALTTAIASWKTPNTIQSDGGPPFNSSALDKFAHLH
NITWHLHLPYHPQSNGVVERHIGLYKERLRLKGGGTFKNWTKLNNDVLISLNADKTLWDESTSWAPKPWVPKFTPNELVW
ITIPHPRQPHPRIHKGTVVRPEQYPNTYTVTFIHEDRPTTLLAHHNWLSRRANPHATTP
>SFV1-1_AMi_pol#LTR/ERV4 1754-4768[Crocodylidae]
VAAVDAGSDGRPPNDERPHATYSVSATADSTPTPTRFLLDTGAQVNVLRPETPHVKTSKVIFVQGLNATTSAPVVKFWIN
KRALHGVLGGINILGIPAIKALALKNAIYLALPLTVAPGEKHQPALANPTPWRYQPIPTRTDLQPQIRNLLADLCKRGCI
QPVKSSTYLSAGWGIPKPGKPTEARLVVDYRQANRRCNPLQMPAAQTVXDILDGITEMQRGGEWFATTLDLKDMFYSIPI
HDPHGILNMCVGGQMFSWKVCPQGYRNAPALAATAMNGTIDSFVRPRPKTADVRIWTYVDDVVIMGHDRAAVRATTADLK
DHLSNQGWTVNPAKSMSEPSSDIKFLGTRFTGQWRSGTAHNATPELSSPWPTTQADFQGLLGQLNWFRNFITPSHLKVIQ
RLQHQIRKKTRRRVPWSERDQAALEKVMTEVKEMRLIAPPAGNLLTIHVGYTTEHIWFTASDAETGKLAYTGHRTLKSHQ
HRYGCLGKVMLAAQLGEHLAASPGVLVAPGGTTLGLLNPSKIHPEYQGTAKTWSALVLRHQYHWSAWQVADGEMIPAAEE
DDPTVPRLYGTTSPAWIASDGASRDGGGYGYYCDPCHDYELQTSHPGESVQASELRGFQLALEHAYRHHDGTLPVPVIAV
DSEYIYRIVTGMAQVTEHTTLWDDVKATLLRFSVRPLIKHTRSHRPDTDPVHAVIDQLLAHRGPVNQKDIPQLHAIDIID
TDPFLAWLHERWGHLGAKRAQARWREQSDEGPSVEQWKRIIQACSACAREKPVHHKHQKGAYDPAHFAPGKVWQVDLLGP
LPGAKPPNKGLVIVDLGTRQILVLPARKTTAPVIQGCLQLAFAHWQVPHIIHSDGGPPFNSKGLERFAIEHNVQWHHHLP
YHPQSNGVVERQIGLYKEQLRLKENGSFKNWTKYNNDVLIAMNATKALWDERTPVPRPPWKPCYSSQETVWLAIPTATSK
RPTPAPGVVLKPGEYPNTYFVSLEAVSPARTVLAHHNWLSRRSTV
>SFV1-6_AMi_env#LTR/ERV4 4963-6630[Crocodylidae]
MTSTGTVVIGLFLTNLISFNVGNPTPPNTVLTLLSFWADTIDNHAGEDGLTACLRLPLSVNDPVFTPYLTPLNVTNWFET
RSREPCTFINVTTPKQQRAHFNLLAGLGEIMPNNHPERGDLTKIMQGPYILKYGWPENFTFSHLNTTKKNCTEGESQLAC
SAIPWGINPQGIDWSRPDNSLTWDPRTVTPPWHLALPPCTDCKPSKXSELTLSPLIKPTPLATWNASLAVNISSNQSWYS
FYYPILRAALMSSACHGVELGVRQXGPPERARQAFQFSGDCAQLTTPAPLGMLWACSDGRLYTTLPATLSGVQCFLTTVS
LCPPLYASTSRPPSPTLLRRHKREAVWSTLTWEERXNEVSKWAAEGPFAWGIGIAKARVAIAQLAEQVELLANHTADSLY
LLDQQLQATSRMTLQNRLALDAMLLQQGGLCQYLNLSRDLCCISIPNVSLPLNDQIDAIRKVATDTNKISGIGQGWLSDL
FGWFGWDASSWLLNLLTPLITLLIPLFSICICVCVGCCVIQFIKNKLISLSAFVYTRLPYEPPEQDDDDLNGLQVL
>SFV1-7_Crp_pol#LTR/ERV4 1721-4695 via tfasty with SFV1-8_Crp_pol, 1 frameshift and 3 stopcodons. [Crocodylidae]
VAAAGSGAPPGDERPYATIWYHHPSDPAAVPTPHRTLLDTGAQVNVITPTLPHVSTGANIFVQGLNATESVPVVKVLISP
FKPVRAAARSFRAVLGTQVLLGVSGIRQLHLGRSVLQALPIREPSIAPPTVKVHPHRPELLRKNLWKFRPIPTKEPLRAS
LNNLLQTLLAKGQIEVVTQSKYLSPGWGIAKPSNPTQAxLVVDYRAANDRIRPLATPAALSITQLLHDVHLHTQSWAYSI
DLKDMFFSIPLDDMEGLLNMCINGVMYKWKVCPQGYRNSPAAAVGALAPVLESIATPSSVCIYSYVDNILIIGADPAMVQ
EIGDQTCVALTQAGWTINMEKSVTEPNKQFTFLGITFLPSGISIGKPDQLATWREHHPKTKKQFQEFLGQLMWARHFLPP
RLHPFVRHLQRKTRGHAWRFWDNSDTKKFNELIEFFRTPPHLHSFTPTEPLxVSYNWLKDQLSVVVCNAQGGPIYYNFAT
IAGEQHRYGLALACLALQLASPFSVQHGVIYGPSTETLPGLNPSRPSACFGSLPVTWARLVNDVHAKWGSWQFQEDPQPA
PAYQDRILLYGTTQPAWLASDGSTKGSSKYGAACQACDWMEIQQINYDTNAQALELLGFLSVLQHISTAHNPARPPCIIA
IDSEYIYKTCTGGATPTAHIPLWGAVFEVIDSLHPPPLIKHTRSHRPETEPVHANLDAKLQTATASVSTPTASSSDHLVQ
WLHEFWGHPGADRASRxWQRLGGNPAEARARQWVAATRRCAACQASKPTATRRHERGAFASVHFHPGKTWQINLIGPLLG
AKSHPKGVVAVDLGTRNVACVPLKRTTAKDVQDALQRIIQWWSEPVELQADGGPPFTSKLLTQFAMARNITLHTHLQYHP
ESNGVVERAIGLLKQALLTAGNGNYKGWERHLPQVLANLNSDKPHWDSRAPTSPAPWKPVYAAGDLVWLMIPKGPHPSAP
VEATVLQPATYPNTYWCEGPRTRILTHHNWLS
>SFV1-7_Crp_gag#LTR/ERV4 105-1721[Crocodylidae]
MNYHSASSAPKTCRGYLSLKKGQKEWAFEGSPSALGCLLTDPRTLFRPLNEGQTVSLKKVKGYGIGDPTPAQTWARGLRH
LKSLGVDTPADNYRCPPLKEGSMGHEMVADLISDLETHGKTAHKWTGPTWDKTKCLSILYQHFVNTVRSYTNLESQLHAA
VQRAADEGREKVKQEAEAPSPGKPVAPPSAPPPPYNGPEGGPVEEAPSALYLKLPASPDVPQSTPPTTPATPTAYPISTT
KITIGPAGQPVTSTSWRSRSRTEIRDLITSTSHHPGEPPLVWLGRMVIDFGYDRVDQEESTMMLRSPTWASGLGGVNAAI
HNHDWPIPLPALVVIALSMTPHTVHEGPKSATGRGRDQLTNYIVGFSYYHWDPNINPRGNLTPEQQVALYPQRYLSDPGS
VPILLAGVTAACDLYWPNDPTSRLWLQTFCGQPVSSMPEALHKLPVDPPPSGGLASAVMAMSSGGSNCYTVSQPKDPPRR
TPKDRAMFGFLLNQGGMSKQQIRRLDQETQEKLAAALGFRWNDEYQDGLEARERHPKNE
>WEHV2_gag#LTR/ERV1 gi|4808999|gb|AAD30053.1| gag polyprotein [Walleye epidermal hyperplasia virus type 2]
MGNKSAKPSTEDEVRYNKMIQTEYCDKVDLGKIHKEFKSFCPAWPDKGSCDTKKWQSLILLRGNTKITPEASKLHGFINC
KLQARRATTAKQLAAQAVKQMVVRKVIPVPRKEEEALTSDSEDDEVFDNHMVIRQRKVRRDQIAEHTRAKLERKARELKE
KQQRETELLASTPEKDFQYIKPDGKQKDKRVHQLPIRNYPSGLGNDTVPVHSAFKAADLNTLRKDCPTIPENINQVKRWL
EQTCEIYHCNNLDLTQLSRALFPPNVIVAAEATAGWANAALQVRIDRLMELLQAEYPQICDWGAIQSHQYKTGQSAHDYV
QAAEKLFRNNSGLPWEHSLVPFLNMVIQGLPTKAAYSLKSANVDWAQKTVPQITSLIQHHLNLQDKKDIKQKQSPIVVQL
AIPNMTEQTPPTYGKGPQDVCFYCKQLGHWKDECPNRRQMRGRGQRGIPFRGSYRGLQRGRSLMRGGYRGPDRRSDMYHQ
IEQQLPPPDPQQYFRQYHEPVYRQSQMQAAAIPWYPNQGPQE
>TguERV2_pol#LTR/ERV1 1507-5148 [Estrildidae]
TAVPKLGFNQCAFCLQEGHWKNECPNRFYQGNQPSQDQDIAKLMVXGQYSSXLENSKEPFVTIQLGDRAVKFLVDTGATY
SVLNDLQGQIGDKQTTIVGATGKEENRPFLQPLDLCFGNKVLTHEFLYVPECPIPLLGRDLLAKLDAVITFENGELLMKI
PESKTGKILMIKEKPAPSIPREVEDAVIPSVWETDIPGKSKLAQPIHVELKEGAKAVQVKQYPIKPEARQGIVKIIDKFL
KYQILEECESEYNTPIFPVRKPNGEYRLVQDLRAINEITKDIYPVVANPYTLLTSVKETYKWFTVIDLKDAFFCIPLDKE
SRNLFAFEWENPGNGRKTQLTWTRLPQGFKNSPTLFGNQLAKELETWTARGQVPREQYLLLQYVDDILIATEEKATCIKV
TIEILNSLGMAGYKVSKEKAQIAQQTVIYLGCEISQGQRKLGTNRIQAICAIPEPQNLHELRVFLGMTGWCRLWIMDYGL
IAKPLYEAQKTQPFTWGKPQKEAFLKLKEALTTAPALGLPDLSKDFQLFVHERMRLALGVLTQRLGSWKRPVGYFSKQLD
NVSAGWPSCLRAVAATVILIQEARKLTMGRHIDVYVPHMVTTVLEQKGGHWLSPSRMMKFQVILTEQDDVTLKTTNLLNP
ALFLGTTSEESPLEHDCVEVIEHTCAARADLKDVPLEQPDWELFTDGSSFMENGIRHAGYAVTTISTVVEAKALPPNTSA
QKAELVALTRALELSEGKKVNIWTDSKYAFGVVHVHGALWKERGLFSSQGMHIKHQDAVLQLIRAVQKPEQVAIMHCKAH
QSGNSKICEGNRKADWTARQAARKVQTTMALVPLKLNVSQFNLPPQPKYSAEDEKLGHLLNAQKNPEGWYVTAHGQIVVP
PLVMREVLQIKHNECHWGAEALVKFLKRYLVSVRMLTMAKSIMSKCEICLKNNPVARRQAQLGRVRVGIEPGDYWQVDFV
ELPRTRGYKYLLVGVDTFSGWPEALPCRTNQAKETVKWLLQEIIPRFGVPLGISSDRGPHFIATVVKEVSRLLGITWDLH
TPWRPQSSGQVERMNQTLKRQISKICQEAKLQWPQALPIALLRIRIKPRSGMSVSPYEILYGKPYESPGPNPNIHVTGKQ
EVYNYVLSLGKTLARLRSALVWNRPLTLENPVHDIHPGDEVYIKNWNEEPLKEKWTGPHQVLLTTFTAVKVAGVDSWIHY
TRVKKAHPGLRTV
>TguERV2_gag#LTR/ERV1 302-1525 [Estrildidae]
MEKLKGLLGGNAPIPRSSPLGCLLAHWKQGNFGQDLHRGKLIDYCNTWWPEYVLEGGEKWPPNGTLQHNTILQLMLFCKR
EGKWDEVPYIDLFFYLRDKPEWQVECGLMVVKASTSDKCEVCVKEKRCLEHFALKESLSRRNDTDVDLQVAPARPREPNP
ILPAPTPTSSPASPNPILSSPISPTQTLSPYPPLPPSPDPSSPGDDLNLTVMHRRGEDESEGDSESRDESESAIPVSHRT
RNRSKPAPVLARKDLGRQKRTVIAPLRQGIGAEGPVFVKVPFSPADLVIWKQSAGTYRENPDKVARVVKMIMKTQNPDWD
DIQVILDTLMDSTEKEMVLKAAKEISKKQQQNLLAVIQGKGNPSIKKKKKQKKTKTNKKKTTTTKVAVDWGGEVDLAGDM
GELLCQN
>TguERV4_env#LTR/ERV1 6181-8224 [Taeniopygia]
MVHLAARSNRVGERGRGEKARSPLNGIMLKCSNYCQPSTRFPWTTRLIASETPKRQQTQKGKTGYYAVKTRSGPHPYWQI
ISILMLCIIHKGESSPALHQPFKWTLTGIDGRVIRSQITSGPPIFTPQLCELAPVEPCFNTAGFYMCPASNPGKGYCNYP
GEYFCGYWGCETIASDWQAAGDKFLKVSWGPYGCTPPQKDSSGAFLGGWKGSCQFVHLNITEPTDPGWMVGRSWGFRYWE
PGKDRGSVFTIKKGPVPADTQAVGPNPVIVRDLTARNLITDNQTTTPTTPPSGDSQFNTLWKLMEGVYKVLNATHPELTE
HCWLCFDVRPPFYEAVGISEKARRLNGSNPPQCNWKDSRGKGMTLASITGRGRCIGRVPTHLEYLCETVTKAKREDTPAK
WLVPAKKTKWICSKGGFTPCISLEIFDETSDYCIQVAVIPKIIYHPNEYMYNVQNIPEHHIQKREPLTALTVAVLMLAGG
AGVGTGVASLVKQTKEFNSLRIAVDEDLERIEQSISALEKSVRSLSEVVLQNRRGLDLLFLQQGGLCAALREECCVYADH
TGVVRDTMTKLKAGLEKRKREREAQQSWYETWFNHSPWLTTLLSTIAGPLILLVLGLTFGPCIFNKVIEIVKRRLEAAHL
MLIKAKYETLPRDPEVEETLILAHQEIKRFDEQNDKIWNGG
>WDSV_env#LTR/ERV1 gi|9629905|ref|NP_045939.1| gPr env [Walleye dermal sarcoma virus]
MDTPGSLQVIAIISLLLVGGASQPATFLEKALPTDGPSLETIEHKTEMVNTTRSEEQSPVRPSKTRQQLIDETPEICANA
WVIRLITEFPTELGNMSQKQKTIAIQVHNTTMTMEETVFSLVSHVNKKNYEIHNVSGICTKYQLVPGNFTCSTRKCISQT
KEKRIISTTVKDTYEVYLPFAWSQKPTGGDKYPEPQIGYNTGTGRLNQWNKDEFVIKQCRKKRGKRQITVPNSTLSPTGT
TDFTKFTPNPISPNSTALNELEQKTTPIGTEQPFNNEKWQNLIFGNIVTKMDPQCEAELFQQFNISDKTVQVEFKVTSLP
GQNISCQAIYNTEHGINIENKNCVISLIKENRKIKAHAYITRTGSYEWYAQQVTSKGIIQEVRNLVTIVECECPIVKPLP
QGGIIPLTMPMRVLTNPSPILIHSALKFDLSKFGLSPCSFSPMEWQTYITKPLKRAMHGFEVHQRKKRDLGIGLHSTLNS
WWNGANSLGLTVESADRQKYDQKILKVLQNLAVQQRTDVKNQQTLGKALETPIYTITLQLADSLTAAILKHEQQQNVGIT
CKDIAILTVTQIATYLRDIQHEHLPVWFIEQITNQILLPVGQVIMPEITAPPILNPLIGWNQSVLVIGLTHQLTITTVQQ
PLYKAANMGNFQDWTPFPPFILANKTHGFSIDCPIMRNSFLCHTLPTPVKLSEWERSTSTIYQTSPQVWITPEGKACLNH
RNITVQDRTCLINKPGCFIPKHPWSAGKQTIVPTQYIQQNFVPDTIDTEDNQTRVLQKEMIEAISKAKRDYGVLKQGQIA
LIRHHEAITTILGQEATYSIKETQALISSIEQEAWYNNLFSWYDGSVWSQLQLIIVVITCTIPLLWVLNTCLFFKLRRAI
RRERDNNIVVEYQAQTRGRRTHMTEPITKKQRAKLLRHAKTNRRLPRSLRATPAVSAFEMVTFDPQEETVEINRIDPSHE
NNDHGGPMNMAPIISADSYALPTPYITIMLDRELLNQGMRKVITLLNDPAREVFNKAYNLVTTNHFTLAYGCDESAGWVN
QHAEYMGKPVIVTLAGLVITPVGLAWIPLPQQEPLEKLFMVPNSMPHVTVAMADYHETKEMGKIVKDINNEELLLVKPQL
FKWDRRVFCSLSPCYKRSCHWTQFAAYRMPCYGSTGRRDLTQSASTLCIISLFILFKVILFQFMLIPMIYQHLLLLLVLY
FFYFLSLYFIFYFFLIFLTYVYTNV
>TguERV6_pol#LTR/ERV1 1843-5397 [Taeniopygia]
GSQGLYFMGTGKHQKEPLIKLKVGPQGQEIDFLVDTGAERSTIQFLPQGCNLSKQTATVIGAKGEPFEVQIIKGVMVESG
TKMGVGDFLLVPEADYNLLGRDLIVELGVQIEVVEKELKIRLCPLRLEDEEKINPEVWYNPGTVGKLNITPFTVKIRNPE
VPVRIKQYPISLEGRKGLKPEVERLLNKGLLEPCMSPFNTPILPVKKADGSYRLVHDLREINKRTVARFPVVANPYTLLS
KLGPENEWYSVIDLKDAFWACPLDESSRDYFAFEWEDPDTGRRQQLRWTVLPQGFTESPNLFGQALEQVLQDYKTASEVK
LIQYVDDLLIAGNEEDKVREESIKLLNYLGSKGLKVSKAKLQFVEEEVKYLGHYLKKGEKRIDPDRVQAILSLPLPQNKR
QIRQVLGLTGYCRQWIENYSGKARFLYHKLTQDGHLKWTEEERSKFQELKETLVHAPVLSLPDLKRPFFLFVNTTDGVTY
GVLTQDWAGKKKPIAYLSKILDPVSRGWPSCLQIIAGCAALVEESRKITFNATLKVLTPHNIRSVMQQKADKWISDARLL
KYEGILLETPNFTLETTTLQNPASFLFGEPETESLMHDCVITIEEQTKIRPDLEEEELETGEKLFVDGSSRVVEGQRRSG
YAIVGGPDLEVIESGALDKTWSAQACEIYAILRALELLEGKEGTIYTDSKYGYGVVHTFGKLWEERGLVNSQGRDLIHQK
LIVALLRALRGPTRIAVVHLKGHQRGMDYRSRGNNAADYEAKKAAIIKTLTLSEGVRKDLVDTPKDPESTTQDKLIFTIE
EQEKLTKLGIKEESGKWLLKDGREVLPRAIAQRMLSKLHQRTHWGAQGLVDHFATHYMTVGLHDLAKGITRSCPTCLRVN
RKNLRKLPLGGRPVAKKPFSNLQVDFTELPKVGRLKYLLVIVDHLTHYVEAIPTARETARTVTKALLEEVIPRYGVPETI
DSDKGPHFTSKITQMLAEALGIKWEQHTPWHPQSSGRVERMNGEIKKQLTKLVLETKLSWIKCLPLALLNVRTQPRADIG
LSPFEMLYGMPYSLEKVQTNPNITDQSINKYLTTLMKYKKQLWEKGMWAQRPPLDLVLHQVQPGDWVLIRSWKEDSITPK
WDGPYLVLITTDSAVRTAEKGWTHASRIKGPVDPTRFHTASRETSWKIDGKPGDLKLTVKRTYK
>SFV1-11_AMi_gag#LTR/ERV4 12-1963 via tfasty with SFV1-20_AMi_gag, 1 frameshift. [Crocodylidae]
MGLPKGRERNNAQNLRSPKSEEDGVDYVSLNCPWRGRRRPLVESTTDLQDHARYHRAVTGPIKGYFSVIAAANSKGKKEW
AVEGLTPAAFACLMSSPAVRYRPYDKAQDVIPFITSKEITDNKDKDPRREYGRCIKYVKESSGHATPSDRFNCPTLREES
RESEILTEFREQLEEKGRESSRWKCGGEKWKKGKVINIMFRTITELLRLAANQAGDIEALAQDVADKNAKLARLKSQNGG
DAEEKNAAGEEGAQKLAVGGHKMGGVSDITPGGEENTGPLAPPTASPGNVGNNASAPPTVLTKGSITDPLAPPPSPPPYK
IPSVYPSLPQKADTASAPTFQVNPIATVKTTVEGEVTRTVAVYRTRTRGEMQDLIRETKISPEETPVMWVGRLVLNHGGE
LLDMEEAATLMRHPVWSGGTCTDQTQIANNRVWPIPISAVVVPTLLAQIHKWHANPPSHPTPLQLLYSIAGMSYLIWNAE
VRPVMLDEQQRREYWPHRWCREPGRAPVEADAVKACAELYGGDQTPLLKVTLHTLIGSPIGNILTELPDLTRTSKVEAAT
ASPIIQVAEGQGKKHQSPRSSLKMSPNVQWKERTPEEKARFGFLLKNSGLTPIQLRRIGDQGQKELATRMGFKYKKWTQT
RGPNKKTSSGR
>ERV2-3_TSy_sag#LTR/ERVK 203-808 via tfasty with MMTV_sag, 1 stopcodon. [Tarsius syrichta]
MFQSPSEKNNVTRIGGYSVYNASNKAVNVSTSATPQEIQTRTGEVMTTQPSIEPITVTSTATKCTFNCMANETLRDFLLK
LWHKELTETEVKTVTDNIGIVKHQISHKTGTPKNKALKPLPTIRAGQHVGYNINNRVWWAPRGRSSMQDLSWLDPPLPYT
GAYDEDMVRWAWVDGRYVKxNSLSLWERIKRSSPPWCLILKA
>ENTV-2_pol#LTR/ERVK gi|33354436|ref|NP_862833.2| gag-pro-pol fusion 93% identical (96% similar) to POL_JSRV [Ovine pulmonary adenocarcinoma virus] [Enzootic nasal tumour virus of goats]
SRTKRFGVFSLGTSDSPVTHADPIDWKSGEPVWVDQWPLTQEKLSAAQQLVQEQLRLGHIEPSTSAWNSPIFVIKKKSGK
WRLLQDLRKVNETMMHMGALQPGLPTPSAIPDRSYIIVIDLKDCFYTIPLAPQDCKRFAFSLPSVNFKEPMQRYQWKVLP
QGMTNSPTLCQKFVAAAIAPVRQCFPQLYLVHYMDDILLAHINEHLLYQAFSLLKQHLSLNGLVIADEKIQTHFPYNYLG
FHLYPRAYTTQLVKLQTDHLKTLNDFQKLLGDINWIRPYLKLPTYILQPLFDILKGNSDPASPRILSPEGRSALQFVEEA
IRQQQITYCDYQRSWGLYILSTPRAPTGVLYQDKPLRWIYLSATPAKHLLPYYELIAKIVAKGRYEAIQYFGLEPPFICV
PYALEQQDWLFRYSDNWAIAFANYPGRIIHHYPSDKLLQFASSHAFIFPKIVRQQPIPEATLIFTDGSSNGTAALIINQQ
TYYAHTNFSSAQVVELFAVHQALLTVSTSFNLFTDSSYVVGALQMIETVPIIGTTSPEVLNLFTLIQQALHCRQHPCFFG
HIRAHSTLPGALVRGNHTADVLTKQVFFQSAIDAARKSHNLHHQNSHSLRLQFKISREAARQIVKSCSTCPQFFVLPQYG
VNPRGLRPNNLWQTDVTHIPHFGRLKYVHASIDTFSNFLMASLHTGESTRHCIQHLLFCFSISGIPQTLKTDNGPGYTSR
SFQRFCLSFQIHHKTGIPYNPQGQGIVERAHQRLKHQLLKQKKGSDLYSPSPHNALNHALYVLNFLTLDAEGNSAAQRFW
GERSSCKKPLVRWKDPLTNLWYGPDPVLIWGRGHVCVFPQDAEAPRWIPERLVRAAEEFPDTSNASNDTE
>ERV2X1_ML_env#LTR/ERVK 5189-7146 [Myotis lucifugus]
SGEEATFVSFQKELLTLSGCQNEQCVITMDLGEQLIPPFKKLKITSPAMTPVQPLAPKKERRVRQQAKTTREASVPTWGQ
LKKLTSDAQQVVEKQGVQVTPSNLFLAMVTLVSCQVSMAAAEIYWTYVPDPPMVNPATWTGDSVPVVTNNTNMVGGSSDK
HITPSSQGDYTYNGFSGELPICLSKRGTSGCLQLGQESKTSYGGTNIANIEGPWDMGKYVQTVTKLGFPKATRWLSDKYP
LLPSCPNSTTSELGAFPLWQDCANPVPVRHNISGSDLYVLDWSHRLDAKYPYHEPMSPGGFVGNALTTNSGNLQKDLWRL
AAALDFLNFTGSFSANTKGACTLNPCYGLRACVQRPYVLVTGNVNITRLDTHYAVQCHHCNLTSCVSRHNLNEDILILKQ
PSFIMLPTNITGKWYHDVGLQALQELHNQLSREKRALGLIIFGIVTLVTVIASAVTASLALTQSIQNAKFVNELAQNTST
TFHDQEDIDKRLETKLNALEAVVIGLGSQLESIKLRQQLQCHAAFRYICVTSARYNSSLWDWNKIKMHLQGIWNHNNISI
DLARLHKHVQAIQNSQDEIISPAKLAKELLDDFKKFNPWEILKNIASYLIGFLCVLLILSCSFSVISKLLRSQIRRIQLD
VHKLHLKIKNGG
>ERV4_MD_gag#LTR/ERVK 456-2470 via tfasty with RNERVK3_gag, 1 frameshift. [Monodelphis]
MGKTLSKETLFVKELKNSLRERGIRVKKKNLFKFFCFIEEHCPWLILHGPGIHPLTWNKVGKELNGLIKSGQEISDEYFS
YYGLIRDILKEADTNKQVSHLLSLAEDAILDHKTKIEEEEIPPEKDKRPPSLLDEPIENSSLREPLVPSKSKPRLYPVLY
TNPESEDILNPTYQTELEEEAARYQDSNRLENRPPLQYKNKSPPYNLCGSLTPPVFPVLPGSENLKEATKQLSQQVAELK
NFLGLQKEVHTLTNQLHDLQIDIFRPLIPKSKPPRLKDKTALAFPVVTRQQQAAQIPPEDISLPPSAESSDSEGAEGDET
DGEHPRQLQDSPQSRTPIYKKLKFKHIKDLHSAVKNYGLNAPFTLSILEGLGGEGHMLPSEWSKVVQSVLSRGQFLIWKA
EFLERAENQAKLNLKNAQTATWTIDKIVGRNRFALENQQMRLPPGLLMQTAHAAMAAWRAVPAAGSVTAPLSKILQGPNE
PYAQFVAKLLETAERVLGQDGADNPMVRHLAIENANSACKAALRGKARDLDLDGMIRLCNDIDAYDHKINKSISLAIGAA
IQASRPNTPRNCFKCGQPGHFARQCPSGQNPRQAPAPIIAPPKPPPSICPKCRKGRHWARDCRSRTTFDGQIFPPVQGNG
MRGSFGSPCPAPLLEPQQVAQAWTSVPPPPEY
>ERV2X1_ML_pro#LTR/ERVK 1769-2725 [Myotis lucifugus]
LTSGKRQVGPAPAPPNNRGTVANSRGTTACGRPTVRKLYHATPGSAGLDLCPTAGYVLTPDMGPQAIPTGIYGPLPEGTM
GLILGKNSLTMKGFQVLPGVIDQDYTDEIKVMAQTTNTIIQIFPETRIAQIIILPYYRAGKLLSTELRGERGFGSSNQTC
WAQLVKRGRPELELKLNGKVFLGIIDTGADVSVIASRHWPPAWPLNTATANLQGIGQVSQPQQSAQLIKWEDSEGNTGYF
TPYVLDHLPINLWGRDILEQMGVLLMSPNAAVTAQMLNQEFYPVKGLGKGQQGRLSPIPTSTQQGRSGLGYGEPQPFH
>ChIAP_pol#LTR/ERVK gi|74619|pir||GNHYIH retrovirus-related pol polyprotein - golden hamster intracisternal A-particle H18 [Mesocricetus auratus]
LGAVEASRPIPWKTEEPLWVSQWPLSSEKLEAVTRLVQEQERLGHLEPSTSPWNTPIFVIKKKSGKWRLLHDLRAINNQM
HLFGPVQRGLPLLSALPQDWKLIIIDIKDCFFSIPLYPRDRPRFAFTIPSLNHMEPDKRFQWKVLPQGMANSPTICQLYV
QEALEPIRKQFTSLIVIHYMDDILICHKELDVLQKAFPMLVAELKQWGLEIASEKVQIADTGLFLGSKITPKNIVPQKIE
IRKDHLQTLNDFQKLLGDINWLRPFLKIPSADLKPLFDLLEGEPHISSPRKFTPAAHRALQMVEEALQEAQITTNSPAKI
IDWYPDAVAQPRSRIKAAVTHFGRDPDSLIVPYTAAQVQTLAATSSDWAVLVTSFSGQIDNHFPKHPILQFALNQAIVFP
QVTAKDPLPDGTVVYTDGSKTGLGAYVVKDRVISKQYNETSPQVVECLIVLEVLEAFPGPLNIVSDSSYVVNAVNLLEIA
GIIRSSSRVANIFQKIQAALLNRRFPVFITHVRAHSGLPGPMSLGNDLADKATKLVATALSTHAQAAKEFHKRFHVTAET
LRRRFALSRKEAREIVTQCQNCCEFLPTPHMGINPRGIRPLQMWQMDVTHIPSFGRLQYVHVSVDTCSGVMFATPLTGEK
ASYVIQHCLEAWSAWGKPRIKTDNGPAYTSQKFRQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKSYLIKQKGSIEDVL
PSVPRVAVSMALFTLNFLNCDAQGHTAADRHSLEPDRPKEMVKWKDVLTDLWKGPDPILIRSRGAVCVFPQEEENPLWIP
ERLTRRAPSQLQNKKDGGQVGDEDSPTRDDGSYDGRVTVGHHVYLPPTDASDAECPGVPIFHK
>SFV1-18_Gav_env#LTR/ERV4 4924-6612[Crocodylidae]
MRSFIITTLYCVAYLTSGAIQQNTFLTLLAVSTTECHDFEETGDSAYDYRLCFPKLSATMDIGIITHLGRPPSSLNVSHY
LNLSRCNLPTADVSGLPLTVSXXIYEPTLNWPYVCVGXSCPANTINCLTPIITLFETLNXXPTNDSLSQIAHCIYVLRVN
LTAGRNHSLXEPKMQRNVHILCSILHALWPQCLTYDPLSPNKRSHQNCRNVNGSSPLWFVPDPPWLSPSEIINSTPRXRL
ISCTSQSPCSLSPPNPKPEVLHTNLAIPCLWSXFENSNNFTKSFRISPXRCHNPVPNGRLPPGWVWFXLKTNATSIYPXL
TPDEALTPVTSLWSLKGLQIGQRKTPTATQKKSSLSRVKRASLXREQEAYAWTLMDIWDKIXFRFPMYGAQANTLKIVLL
TEAVANLTNLVTEGFRNIDESFRKIQAAVYYNRLGLDYLLLEHGGLCALFKNDSHCCLEFTPQDGGNLTQVLSGLEMXST
QLREMNTKKESWLDGLFNWLDWDITKWLFPLLMPVLGVVVIIVVLCIFSRXFNAIKKRITTLSAFVYTRLPIVYEFDERX
DEI
>SFV1-12_Gav_env#LTR/ERV4 6349-7983[Crocodylidae]
MAPGLKNSPVTLVLYCMCCIYVVVTSDELTPEFSNPSNSVLQLLSVWANITGDDETGDGLTACLKVPMAADDPIFTPYLI
PLNVTEWFGQVSQSQLPSMTVTYGTLDDGSLHQVQYTWKQNFSLFDLNNVEEKRCVQTTLGEPPYTLKPTEIPCAKIPWG
STSERSGETFIDDSLPWDPRSVTPPWVVTLPPVPGPGHIAGVTRVALRTPPTVTRWKISSTDSYLKFYYPVLRAKVLSAA
CHGISSPVQDADSHYPEPLFQFGGSCSQLYTPAPLGLVWACNDGRLRLKLPATLSKVQCFLSSVLLCLPLLANTAHPPSP
AVLYRHTRSTTPVWSTLTRGEKIAQGLAWSFEGLFLWGLAIGKARIALAKLSEQVELLANHTATGFELIDQQLQETSRMT
MQNRLALDALLIQQGGLCQYLNLTHDMCCIAIPNVSIPLQRQIVKIRQIAEDVNSIAGIGQGWLSKLFNWLGLNASSWLV
NLLTPLLSFLIVFVVIVIITSCIFRVISRRVANLSVCIYSAIPGYLDLRDRNETEEERERLNSEI
>SFV1-19_Gav_gag#LTR/ERV4 30-2098 via tfasty with SFV1-23_Gav_gag, 1 frameshift. [Crocodylidae]
MESELTKSCPWHSGVRQTTSPDDFWDHITFHQAANVAAETISGYLSLRGTSGEEWAVRLTPGALGCIVRDPRAVYRPRGE
TGSIALARMKSSGTARSSPDREFARCIKYMKEGGEDTPPDQFNCPSLTVGSRGHELLTQLRESLERDGKKIKWTGAKWKK
GRVINVLFQEYVILLRELTDTRTQLAAAAQVVNENLAERPLQDGAGQAASAPKVELTSRHPAPPILSPPSTKTPPMVLPT
WNPPPATAPPAVITSPPPYVGQRHPEDVRENSNHASDRATNNHTIIRQETKETGTNTNGTTNNHAIVGNNENMISMNGTA
SKSTNTPTETNVTTSNDKTEISMIENNEPELVAAYPIAVQKFVTGPQGQMQTTVTTRSRTRSEMGELKKETGIRSDETPI
AWLGRLVAEAGNETVDQEEALQLVRSAAWSRAKVVDPIPAMANNYWPIPIPALAVEALQRKVHAWHEGAANRMNAATMVH
AVIGASYALWNPTHRPLNLTVAQVQGAWPHRYATTPGDVPCLAEAIEAATEIYGGSQSITARLLLSSSINGPVMHTLGLL
DQLQGAMKTKPQKNTYPVSDGEYETKHAYPIDSHATHSRWVDQKSYNQTYQRKPTWTSPQTTRRYQPRNSPPSHPKNRTS
YSPPQRTPWERAMFGFLLEKSGLSKEKLRLLGDGSQRDLAKALGFGERSK
>SFV1-23_Gav_pol#LTR/ERV4 2045-5454 via tfasty with SFV1-8_Gav_pol, 1 frameshift and 3 stopcodons. [Crocodylidae]
VTAVGVSPATDGYHDSNKPNGKRKTDFETDLTRSDLKRNEPSYEKxTKRSEPKCNEAEPGERTEVKRQNPKRYDSKRSTM
KLSDLKLNKPNKNERKPKLATIRxSDITQTAVTSSSEGEQEEVAEKDGRQEVQNKTVKAVMATNYMKLVDSDPRPYASIE
IQNPNDQIDITVAKFLLDTGAQVNVIKPFIPHLKTNKIMMVQGLNAATATNRVKFLVKGHNKRLDAVLGGINLLGVPGIR
ALDLKQKVLEALPISTIPENERHQPTLRINSNWKYTPIPTRSQLQDPLDILLEGLVRKGSITPIYASARLSPGWGIPKPA
RPNEVRLIVDYQEVNKRCTILAQATPCTLVQSTREMAEYQAKPWVGTTLDLKDMFFSIPIADRDGILNMCIRGKIYRWNV
CPQGYCNAPALATGAMNESLDRFRKSNPEAKSVKIWSYIDDVAVMGRDQTVVKKVTTDLVKHLNSDGWVVNEKKSQLDPI
DRISFLGTIFDGTTRRGVAHDEIDFDLWNNKIPSKKKEFQALLGKLNWSRHYIEPVHLPLLARIQRQIRERTRQKAPWTS
QDTKALNELVTSVKNTTLHAIDLTTTLTVTVGYTTEHLFATVKNAEGNLVFMAHKTIQAAQHRCGMIGKTLLAAQLVEHL
APGKGKLKAIGATLLLRLLHDRPDPCFQGEPSTWSALVLNHLYQWPLWKHEDLPPPPTVIEQQEVILYGTTQPAWMASDG
STREGGKYGFYCHPCREHQIHPGCESAQKNELLAFRDVVQHCLQQHDGTLPVPVIAVDSYYIYKIATGTASPSEHRELWK
EVYTLLSEFSILPLIKHTRSHRVDTDPVHGTIDKLLQDPDHADGVLVAQHINDDVCVDPYLTWLHENWGHPGPRVCKCKW
TQGSEGNPEYGSQKDWTRVAQACEACAKEKCHPTGNSKGALDRKSFEPGKAWQVDLLGPLPGAAIPNKGLIIIDLGTxQV
NVVPLRKTHATAVITALTSVFTVWQIPNTIQSDGGPPFTSVAIDRFAKLHNIEWHHHLPYHPQSNGVVERAVGLYKEALR
LKGQGSYKNWTKINHEVLATLNSGKELWNRRDIEPTKSWKPRFQKTELVWITLPDPKNRHPKVLKGSINSAGRYPNTYLA
ELEDSNRIILVHHNWLA
>SFV1-20_AMi_gag#LTR/ERV4 12-1961[Crocodylidae]
MGSPKRREENSTQKSGPQGNKGGEVDYVTLNCPWRDRQRPPVENMADLRAHALYHRAEAGKLSGYFSVRTAERNQEGKEW
AVEGLTPAAFGCLLSSPAVLYRPYDKAQEVTPFISSKQITDGKNKDSRREYSRCIKYIKESSGRDTPPDRFLCPALREGS
RESQILSDFRERLEIGGREASRWKCGGKRWSKGEVINVMFRTITELLRHAVNQAGDIETMAQEATEKNAALATLRSQDGA
DAEGKSATVEKRAPKILAGTVSKEDAGHKMGGASNITLAGEENKNPLAPPNASAEGAAGGSLAPPATSVGSEKINSLVSS
SSPPPYSVPPTYPSLTEETKAASAPTLHANPVTTVKTTVEGELTRTVAVYRTRTRGEMQELIKETKINSEETLVMWVGRL
ILLNGGELLDMDESATLMRHPIWSGGTCTDQTHIAYNQVWPIPVSAAVVPTLTNQIYKWHKNPPSNPTSEQLLYAIAGMS
YLIWDADAYPLTLTEEQRRDYWPHRWCREPGRVPVSQEAIRACVELYGGDQAXLLKMSLFTLIGTPIGNILHELPEIRKV
FKVENASAVPRVQVAKQKGEKESSPKLSPKMSPNNYWRERTPEEKARFGFLLKNSGLTPIELRKVGDRGQKELAARLGFK
YKRLEQQKNE
>Atlantys_LC_p4#LTR/Gypsy 10250-12349 R) [Lotus corniculatus]
MASGSGSDNVIPLAAACEMNEAKRTPIPDPPYDVEKRAIWKSQVFIPISVNGNLRAILGPLKKAKKGRPNSLPEDYEHFH
PSIRGDELILAFQPSYRFPFLKDPKRAFRSAPPNPSAGEGAYLRWLNRVEASKSGHWKVTGIFDLIQLSRSPITYNPAML
LSSLFFWERSTNSFHVPFGMLSPTLLDVAAITGLWVVGDDYHSSAAPTDPIAIPTDNIAFSKFIKDHYVENGEVSDAEHV
AFLLYWLSAYVFCTKSLRIPAKLLPLANLLHEGRIIAMARLVLGNLYQMINEAIADIRDPKVASLNAAGPFWLLQLWMNA
VFEPSLPAKNSPPVVSNTRIDAFRLEALTPPYDASTFEFDFKKYFTMFFELKRFRSSFAPYHKPSYGPRWLRNSYPNLPG
SENLSQHQVELWQTILSPRVLTINFASNDFTLCGYNPQLVSRQFGLSQDLPNTLFDKSLILYPGTITKRSVFDTTIGYYN
NEELLGLSPFSFTPSFYVTQAFKAWWSAYWHDISTPIEDCFQRITNVFLLQRQAPKKTKGMHTSEINAFQQFFGVVYFPG
PRLQETVAKAAQVLRRMWEAKAKKTRLSLPSDEDGLSFIIRKTGFRFPPLPTCKYALAFPVVLPKWVDHVSIKNFYHSAL
PPRKRVTWTKRYLWNYPLHVPVEIFNHISIKSLIGQGNHFDLASLRYLWLNPPLFSFCS
>Atlantys3_p2#LTR/Gypsy ReverseORF 9298-5834 GENSCAN_predicted_peptide 6 exons. [Arabidopsis]
MGKAVLVSPSSSSSESEASLVRRNSRLTGNPSDEAQSSRSNRIEIPTLLDEPDREGSGGHPAAPEDSVDFLAQFDPLIDL
EDAYNTHPQYTEAEVNARLLHEDYVEFDLDPIVHWNTEITVKKTLSTTESVAEVFTLCGSGDRPLTYMILGEDERPWNPP
RGYVCMYEAYFRQCHLWFPIPSLIISFLNRRRMAFSQLTPVAICNFVVALTFGAEEGYLVNVRCFEEMTTLKAIRSPGYW
VVNNRPKYNFLPGPKVSNFKNWEEYYFYIRVDLESYERPFSWRKRMWTEFPDRYRPSPEFPMEFEGVLEAIFQAQRPPIE
EETHPLDGEAATSNPPVSAGPSGVDQVSHETVNPDSQDRTRLEGADVVPAQEIAECDQSQSVQVVEPEIQNVTSDRSIAV
YAAVPAGEEVNTGLVIVDQDKDETVEELETSRRSREEKGKGVANQSKKRSASEAGLDEVAAPKTFRLSRGETLNSDQFSF
KYSGAKFLVRDQEAASHLWRNLMLPGTKDFPNLDDLVLKEGYQKFARSSLETAALANDLIATYDRKLKLKLADREAFDNL
KKCADQAKAIYAKDMKEMAALRDAAEIHKAEMSSLNDEVKRLNGREADLQKEISDLQVALVAVKEHGEKECNRLRNDLVA
KVARTTKKAQARLDKVKAYLKEQEDLVGPKELTKRATDEVNALNVIELGDDDLNMSPDQLGFLRQASQIAPVADHHSSNV
DLVSGSDIRRASSEARREAEGCLSCVESRHKEYREMLRYYDERKSDIARKMAMLESHPRHWLKNGFQLLAPMPDIILSYC
EDCARDAAAASKEKNPTIIADGDFIPRTPSLFYLGPGATDADTNECQNFVNQYFRTKKRRVDFRLEELETLIAKLKKKRR
RVVIRLDEVEQTIRALEIRSEDWEKLCWMPG
>Atlantys_OS_p2#LTR/Gypsy ReverseORF 8498-10072 R) [Oryza sativa]
MAAATYFWSNTINAFLFNQGPMTPTLIDIIMITGLDVTSSANPMSMNTKNQFDFKTKSIGGWSGYVAAYMGQGPVTPREH
VAFLLMWLEKFLFCGSSCGPTTNWQFVAEALESKKQFPLGKILLGYLYQMLNNASAKIAVGSVVGAGGPWWLLQTWLNLI
VMKVVNRPSVTEAEFPRLEPIVEDDGEERTHRRCMSYGEYASTPTDAGAKLSAELLKDWFCSFYEGFQKDARVWFLYEDS
ADLELPSDFRFEDINHERYQKSREVFTAAISPCILPVGIHQGRNIQVSYEFYHPMSSARQLGLGQLPIGLFFADKIQCRG
EISSTLMMDRLLNLQGPPLGSIDNIELAGFRSKNFDRWWGEWKLHLFHQSASMYMTDLFPDVIPQVNFVITKFINWLADS
FLTNLSPVLQTTESSPPHQSNSGRNIEYAPGLIPNGGGLSPPVIGYHAPKTSTLLQGLIREPADAGKKRKTRSSAVSTLA
LAPKKKTKSRKPSQLMICLPWIHPLNKLWMKKKLKMMLIRLQPK
>BLOOD_gag#LTR/Gypsy 1465-2718 [Drosophila fruit fly genus]
MEWLNLTISINNIRDAFDKSYKCINKTALIKTQTLIFHIKVLITQYNTLQNLIVTNKSKLTEEHKVQCFKVLSSFGKRLH
NTSVRHSIIIEVPTELTKIAEFDESQLRDLDESQPLEDLDIESDIESIEELKFNTVQPNTRNMANALEAQRAYVKQVSAT
VPEFDGKKLHLNRFVTALKLTDLTKGDQETLAVEVIKTKIIGPLNYKVEHATTIQAIITILQANVKGESPDVIKAKLINA
QQRGKTASQYVTEIDSMRKQLEAAYIDGGLDADNADKFATKESISAMTKNCANEALKMILTAGTFSTFNDAMEKYLHCST
EITGNSNTVLFYNGNNRRGNYNAYYRGRGRNNYNHNYNQNYNQGYNNNNRGRGGYRGHGNNRDGGNRRGNQSQNNNNNRN
VRNVQSENSQTPLSDQQ
>BAGY1_HV_gag#LTR/Gypsy 1533-2513 [Hordeum vulgare]
AVVLFVRMVFTRLNSAPAHEQGEGSQESKEDLPHPPSLAEVMLEAERNKRETNRLLEHIEKNTARQPRNAAVSLNDFVKL
NPPKFHRSVDPLDADDWLCTISRKIRSANVSEADKVTFAAYFLEGPANLWWESFEAMRPAEPTATWAEFTAAFRLHHIPE
GLMDRKREEFCAFTQGKLTLDAYSREFGNLARYTTEEVSTDAKKQARFRKGLSPELRRDLCRHECTSFQALVNKAISADT
GHTDFEATKKHSRDFGSSSGSAFSKCRLWVPNSSMPPRYTPRPSYVAPQMNHTNPPAKTNGGPASIVAPRANEVICYMCG
EPGHYS
>ATHILA-4_SBi_gag#LTR/Gypsy 146-1474 [Sorghum bicolor]
MSGFNLPANFHSDPETLLRKRRVRTVSSSATQPASESTVPAPTAPIAMAKTLRDYSTPAVANVPTGPAVNMGNGSFEIRT
GLISMVQASQFCGLPSEDANAHLQNFLELCDTVVIKDVAQNSIRLRLFPFSLAGKAKQWFYQNKEAVDTWEKCSAAFLAK
FFPMSRTSALRGKISNFQQSSLESIPEAWERLQEYIRACPHHGMEDWLVLQNFYEGLTAMSKGHVDAAAGGAFLSLTINE
ATALIEKMVANQSWGEGRKTQKGSQSAKEADVLAAKIDLLLQRMDGQVANPNMGTVQAVNSHTSCEVCGDDGHSGNNCPE
TQEEAAYVNNGFRPPQQGNNGWNNQHRPQGNFFNQPSLKDLVIGQAKINENLTKKLSYNDKIIENINAKLETLCSSVKSQ
TSFNKMIETQIAQIAASIPVTDTERIPGQPETSTKFVHAATEE
>HFV_bel2#LTR/Foamy gi|19111831|ref|NP_590484.1| bel-2 protein fragment [Human foamy virus]
MFDIDSGPDVWCSPSLCFKVIYEGAMGQKQEQKTWLCRLGHGHRMGACDYRKVDLYAMRQGKENPYGDRGDAALQYAYQV
KRGCKAGCLASPVLNYKALQFHRTIMADFTNPRIGEGHLAHGYQAAMEAYGPQRGSNEERVWWNVTRNQGKQGGEYYREG
GEEPHYPNTPAPHRRTWDERHKVLKLSSFATPSDIQRWATKALPYGWKVVTESGNDYTSRRKIRTLTEMTQDEIRKRWES
GYCDPFIDSGSDSDGPF
>BFV_gag#LTR/Foamy gi|9629645|ref|NP_044928.1| gag polyprotein [Bovine foamy virus]
MALNDFDPIALQGYLPAPRVLQHNDIIICRATSGPWGIGDRYNLIRIHLQDPAGQPLPIPQWEPIPNRTANPRTQPYPVV
SAPMATLENILNNFHIPHGVSRYGPLEGGDYQPGEQYSQGFCPVTQAEIALLNGQHLEEEITILREITHRLMQGVRPPAV
PQGPAPPPPPAQPPAPLPAPPIGPPPPAAPAPAPGPMPVPQHLPITHIRAVIGETPANIREVPLWLARAVPALQGVYPVQ
DAVMRSRTVNALTVRHPGLALEPLECGSWQECLAALWQRTFGATALHALGDTLGQIANSDGIVMAIELGLLFSDDNWDLV
WGICRRFLPGQAVCVAVQARLDPLPDNATRIVMISHIIRDVYAILGLDPLGRPMQQTLPRRNNQPPRQQPQRRQQPRRTG
NQEERGQRNRGRQNAQTPRQEGNRLQNSQLPGPRDCPNNSNQPRYPLRPNPQQPQRYGQEQNRGNNPNPYRQPTPGNGNQ
NRNFSRGPAPVNEQSRGRGRSSQGTNNTGSSAVHSVRLTSAAPPIPPQDAGTPPTSSGNQGQSS
>ATGP11_gag#LTR/Gypsy 325-2519  [Arabidopsis thaliana]
MSTTEERSSHNRNKHLIEALTTEMGQIFDIHLNQIHQGHHKARKKKEQELKSKPPDNSLRSIQSSPQKITHTPKSKSVFH
FDYKPTNALLKFSGKQDYLEWEKNMDEWFSYKNFLSEMRFVCALSHLTGDAYKWWLQEVDDRLYYKEPPITLWRDFKKLL
RNKYAPQALECTPKGNPKIQGLAAQEKEQGLAPYSKKNPIAEQQLKDEILKILNAYNKPKKVKSTSQPKMVTEEVVVHKQ
NRQPSLASSGEQKQCKSSNLSKSRGVTCYNCRKKGHLVATCPEKFELTNTSLESKLSSPNSSSEVVSQGLENSSSCVTHL
FLSKDVDSGHTMEHENDKTEGSTKEENHHLVSTTSQACRADYVSKITILNMKGPPYVSQPILNRELRKQEPRELGGFTQV
EAVMVHKQSPRAECNIFFKDKPPDATPPFKTRGIYLNSQNRMKANLRSLGEGCTLWGAIKKTNDREISTHHMSQSRDPRE
DYQNQLRLKNMEECIEEPEMDISSFSTFHTYQWRPGELLDSSREEELVTNNALIQKEPPDPTPLPLVMMIPSTEHTVNLT
QVSNSLTRFVSHVSIIVTMSLSYLGNIEKELDLFKEYLESNSCLRIKVKHEHFKNGALIKVEPCLLVYNDFMTMIMHLLF
AKGVDNIAGIKEEPPDLEFLMSNLFKRTGIGVVLKPKVDYPSNRTRRKNDNAYELELQGKYNVSSNFNDSYLVVFIVGEL
DLRSNPFQVGE
>Athila8B_gag#LTR/Gypsy 163-3097 via tfasty with Athila4, 1 frameshift. [Arabidopsis]
MRRSQNSGVPPYQDIGRLEREIRRLQRQKAMAEQRKQDEGLPAYQPQQVPALEEHGQSLHDEDGNPIYEAAEEQLDPQDR
DYLEAHPLGVGENINAPLPRPPKIVARQPTYVPPSKTGNRTIADYDAPNRYPQERAAIRVPSPRQNFEIKPHIIGLVKQN
QFHGLNTEHPMDHIDLFEEICSTTQSRGIPKDYLKCKFFPFSLADKATRWLKSLHPGSITSWEGCKSAFLNHFYTKSRSN
SLRNKLQGFQQRPVESFYEAWERFKDYERDCPHHGFPEGNLISTFYRGLHAKFQLSLDTASNGDFTTKNVDDAHAFIENL
ATSNSNASTDFDRTIRTKDSDSKEMFELKNMMAQLLKNQNRALNACETVGNTEAFQGYNDTFDQEEEVNYVGTQGFYQNR
GYNNNFNNNFRGNSNLSYRNPNVENPQDQNYPPVKPFQGRFQNANYNTNNFQPRASFNNNNTAPFETGPTEPAPSNESKL
EMMIQDMTNENRKANQAMEVRMGNMYGDLNGKFESLTTHMKKLETQIVQNSESVKRQPDTLPGRTEENPKGFCNTVASTQ
TPANEAESSVPPVEPDQDVACKPEEDVKVKPECQPLRKLPKAEDPGRFVCSCSITSIEFPDSLCDFVNLMSGSVEEKIGL
RDLSPSNLNLVFGDASQKTPDGLVCDLLLVVGDCLVPTDFHVLEMDEEIDKPLILGRPFLATVGAVIDHNRKKTIFTKVN
KKVIYPTISKTVPNPVSPLPYHPVGPDINKEEKGNRVIRKRAPKLPSKPPNPPKISKVKIIIPPELGKESKEHIQEMIKR
TKEVFLQDKVSKTPFRRKLTIEAGAGYQDIKDAKGEAIPEAPPH
>Athila8A_gag#LTR/Gypsy 126-3290 [Arabidopsis]
MNSRNYPNSYYPNVNHGSNRGSHFSTGHYTPDASQMHGESWQSWSSNGGAYRTDHYSNDQSATFVQNRPQANRSVSPFHH
CVPSPRDQRVGGPHSSHPYGVARHEDFGYDQGYLQEVMSVDVHPNNYAYQTNEPYQTAELEDKLIGLLQDFVDDHQEDVK
RIDSKMTEMKAKFEEKFDDLTNRLENMEGALVEINNTLLNHQDDIQDQNTRIVNVGFAVDTVESHLDWKIEELEKKLTNS
NEFSEWRSNQSCQEEDEFPKAQARYEEETKKEIGFLVEKGKDLISYSEKGNLDPIKSLGISIPFVSPQDQIEQEEDLEEE
EAVSFEEDSMAEHNSREESLETEKEEVCLESQENRFEELSEESDELTNFSSEEGEDEELKDVHSCMAIRLPSGGIPANPS
FGQLGSLEEANPRGSLGAIQANRPFHVGEDLDAARRAQPSRFRTPYPRRAEESYPAQHYRPPVLPMLSTRDRSHMPWKHK
THEERLEILVSQFLDQQALDTRKLNARIDDIEVTLLSKVDALFVKFKKSEGSRVKEAEANEERFKKIEEEQERHLKSAQD
NAINTRALLRQISNSDKDYDAKIEALSDKDANLVSRLGKLEDHLYEEQRRVDDLSYQQNRFHETLSERTILAAGNDELDP
RDKREWSPCSGKDFSSISQDDLRRIQSRMEGVDESIWRLQTRINQLEDNDAKEDVALEDVIRRQGEVEENQVKNVDDQSK
IRASLRRVTMESSRKYVELLDRILDLDKKVDNLSTRIEGHEPMESEEEDSSPHVLCDAVTTYQEPHDLEEGEIDERDEDP
PGRTSVYNRLTLLEDRWHPRMISLRRLGDFNRAVSKLPRGIPFSKACSAYHIDRFFLESCETRREMKELYEEALHHLKPF
NTLRKIESPGRFLVTCSIRGVEFKDALCDSGSCINIMTKETSKKLRIKELQPLDVRIGLADSSFTVPEGIVRNVYVRVGR
CNVPTDFHVIKVEKGRPSQLILGGAFLATAGAIMDWPNRTVCFANIDDEVFHEMVPFTPAARRRRRSNGESSEEPPEEFQ
SKRARLGRNNPSYYA
>CINFUL2A_p2#LTR/Gypsy Matches RETROSOR1_SB_p2, 2 stopcodons though. [Zea mays]
MLLSKALKMQQDFEDKKHEVIIENLESKIKEQSDVIEKKNFELQATEGSLAEAEAKITELNMKLIRQSExFEREKQDLNA
KLEAEAQQNSDLRKLLTSLQEKCLEFSNKCIHxLRKFFHSVGASSEKFVPSAEDLPKTFEHIEGEIDELDEVIAGHGDFC
AWVTSRGTAAAFLKAGCDHGKIVNRPNFTLSSSILDDIPDLARSISNRFVKMIWTKGGREKAGDEARSHLEPVRNHTLCL
PFLASSILTFNDLIHVG
>GYLES1#LTR/Gypsy 26-4631 Gypsy-4_ST product near-identical. [Solanum lycopersicum]
MVKNAELWELARKIESFVGFTEDVLADPTFVDLFTQIIELRVDAEKVQGEIGGYRQNVDNHITEILDFRATTTQKLEGLQ
KENENLRAELVVLCRAVATLSSTRVESSKVKIPDPKAFSGARSAKELENFIWDMEQYFTAARVPDADKLNITTMYLSGDA
KLWWRTRNADDVSAGRPRIDTWDKLIKEMRDQFLPSNASWLARDKLKRLRQTGSVREYIKEFTSVMLDIQNMSDEDKLHN
FISGMQGWAQNELRRQNVKDLPGAIAAADSLVDFRTTRPSTDVPSTSKNKKKNEKKGEWRKDSRKENANDKGKAQMKDGK
DRPKSKDGNSKGCWTCGGPHLAKSCPNREKVNALLAGNVNQREEDEEIVAAMANPLGLSFNHIMGINNVREISSTSNPHA
SLIHIEMKVKEQCVMAMVDTGATHTFVDVKIATKLGLKLSKSPSYVKTVNAKAQAIVGMAYSVSMSTGNWVGKHNLMVMP
LGDFEIILGIDFLRKYQFVPFPHLDGVMVMSGSDAGFLKGVHPFGNINKVAKKKDKEMLLSAMSIDKGLKKGDETILAAL
VEIKPDVKMEVPDCVAELLKQYADVMPPELPKKLPPRRDIDHKIELLPGTVAPAQAPYRMAPKELVELRKQLNELLDAGL
IQPSKAPYGAPVLFQKKQDGTMRMCVDYRALNKATIKNKYSVPLVQDLMDRLSKACWFTKLDLRAGYWQVRIAEGDEPKT
TCVTRYGSYEFLVMPFGLTNAPATFCNLMNNVLFDYLDDFVVVYLDDIVIYSRTLEEHVNHLSLVLSQLRKYTLYVKMEK
CEFAQQEIKFLGHLVSKNQVRMDPKKVQAIVDWQAPRHVKDLRSFLGLANYYRKFIAGYSKKAASLTDLLKKDAKWVWSE
QCEKAFQNLKNAIASEPILKLPDFELPFEVHTDASDKAIGGVLVQEGHPVAFESRKLNDAEQRYSTHEKEMVAVVHCLQV
WRVYLLGTRFVVRTDNVANTFFKTQKKLSPKQARWQEFLAEYDFMWEHKPGKHNQVADALSRKEVFVAVYSISKLETDFY
DRIRLCAANDSLYVKWMGQVQDGTMRRYWIEDDLLYFKGGRIVVPNQGGLRKDLMKEAYDSAWAGHPGVERMLALLSRVY
FWPKMEDDIEAYVKTCHVCQVDKTERKKEAGLLQPLPIPERPWLSVSMDFISGFPKVDGKASIMVVVDRFSKYSVFIAAP
ELCSSEVAAELFYKHVIKYFGVPADIVSDRDTRFTGRFWTALFNMMGTELKFSTANHPQTDGQTERINHLLEEYLRHYVT
ASQRNWVELLDTAQFCYNLHKSSATEMSPFEIVLGKQPMTPLDVAKSKNQGKCPAAYRVARDRLEMLSEAQDSLRKAQQR
MKKYADQHRRSVEFSVGDKVLLKLTPQIWKQIVSKTRHRGLIPKYDGPFEVVKRVGEVAYRLKLPERLKIHPTFHVSFLK
PYFADEDDPDRNRSKRAPPSVPTQYDAEIEKILDHRVLGTSKKNTKTEFLVHWKGKSAADAVWEKAKDLWQFDAQIDDYL
KTVSMRTSSSSGAGG
>GYCUME1_gag#LTR/Gypsy 352-1641  [Cucumis melo]
MEQRFRDMIMQMPEQQKPASPTPAPAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTR
AQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLN
LEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGR
GSTSGQKRKAEQQPVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCP
LRVTGIAQNQGAGAPHQGRAFATNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVSHARLEVEPLHHVLSV
STPSGECMLSKEKVKACQIEIAGHVIEVR
>GYMAG2_gag#LTR/Gypsy 172-1507 via tfasty with GYMAG1_gag, 1 frameshift  [Magnaporthe grisea]
MPRLKDHPPASRKSQRLITNQTEQTDRPIDDPTRSESETDFRPGTKSSVEDEIEVASSSRSPELNVNAQENNPRMMSDAN
DPASEIARLEAEILRLRNALRNDTPSPRPYRELRHREPSVESAFGGTSFKAKGMAAWPAFTEFQGTGGINPAYNDKAKAR
ADSPPKFAGDKTQFDSWLIKVADKFEEDVAIFRTEKSRMRYLMNLLEDKAEKAMITRYVSVTRPFSSAAEMIQILESMYH
DPNQSxRAREALKKHEFELGKGQDIHEFIATFNSLAQQAKVREEDWKQTLWGCIPADLDHRLLHDSENIDIDYETFCQYV
TKAVYSNQLAQERRKDRESTDKTSTKNETRSRQKTASTKVRSRYKPKDYQGDRTEPITMAKAGRSLTYEEKKAHWDANTC
FMCGRGGHNSKDCPEKERIRDVKAVKPKQQTSSLDSETTDESGKE
>GypsI_gag#LTR/Gypsy 2451-5432  [Oryza sativa]
MKAIAIKNVEATPSQARKDLEDHVEVEDLDELESTSSSSLEVNLNLPRYNELNPSLPSDGEGYPNNFDSAPAHVTAEGDP
RQHARQHAPRGENPSIGNWATMKEVFKKHFVAMKKDFSIVELSQVRQWRDEAIDDYVIRFRNSFVCLAREMHLEDAIEMC
VHGMQQHWSLEVSRREPKTFSALSSAVAATKLEFEKSPQIMELYKNASAFDPTKRFNATKPSGSGNKPKVPTEANSTKVF
STAPQGQVPMIGAKNEQVGGRQRSTLQDLLKKQYIFRRELVKDMFNQLMEHRALNLPEPRRPDQVTMTDNPLYCPYHRYI
GHAIEDCIAFKEWLQRAVNEKRINLDADAINPDYHAVNMVSVEPFPQKQREGRRATSWAPLAQVEDQIAKIMLTKAPATH
VEASHGDNNRAWSIVRWKPQPMSFPPRRPQMKLSPHTHPTSRRWLDPSRRRPPPRFVPFSEGDESFPRRGRELPTLAQFL
PKGWEQSSTSTREAKGVNNSIPTPDIAPCNVILTYNDSTSTGSDETFTGREREIFHAELDPEKTKVEEVNISLRGGKTLP
DPHKSKVPNVDKPAKKASPPGEAPEAPETKTGSKEKPAVDYKVLAHLKRIPALLSVYDALMMVPDLREALIKALQAPEVY
EVDMAKHRLYDNPLFVNEITFADEDNIIKGGDHNRPLYIEGNIGSAHLRRILIDLGSAVNILPVRSLTRAGFTTKDLEPI
DVVICGFDNQGKPTLGAITIKIQMSTFSFKVRFFVIEANTSYSALLGRPWIHKYRVVPSTLHQCLKFLDGNGVQQRITSN
FSPYTIQESYHADAKYYFPVEENKQQLGRTTPAADIIVEPGTETTPEVRCLIMPCSPIISESSSRNHKNSRRGNSSSATN
LSTKLPSPAETSTSTPSTTPILLKARRSTSTLITLGATSRGSEKPPKSNGDVPTTITLQARRSPSKEAALAQQGVVKKRV
AEIEEVKAGAQCMQPPALYTSVSTPLEKKRARP
>GYPSHAN3_MT#LTR/Gypsy 44-4241 via tfasty with ATGP4_gagpol, 1 frameshift [Medicago truncatula]
MPPKKLTLKSMEAKVASLEEEIMGVKVTLAAMEKTQTALLALLEKNLGKTVRTENESVVDGGSSEKNAGEGTAKNTGEAS
AKTSGKSGSSKLQGEALVEFRHSVKRVELPMFDGEDPAGWISRAEVYFRVQDTIPEVKVNLAQLCMEGPTIHFFNSLLNE
NEELTWESLKDALLLRTNGGHGEGDVYEQLTELRQRGSVDDYIAEFEHLTAQIPRLPDKQFLGYFLHGLKEEIRGKVRSL
AVMGDLNRSKVLQVARVVERETKGDSGMSYHRQTKSGHGSNRGGIQGSNRGNSTDWVMVKGNKEHGSAGGSKGTGFGPKG
EKQAQYDKKKSGPRDRSFTHLSYNELMERKQKGLCFKCGGPFHPMHQCPDKQLRVLVLEEDEEGEPEGKLLAVEVDDEEE
GDGEMCMMEFFHLGHSRPQSIKLMGVIKEVPVVVLVDSGATHNFISQQLVHKMNWAVVDTPCMSIKLGDGSYSKTKGTCE
GLEVDVGDVHLEIDAQLFDLGGVDMVLGIEWLRTLGDMIVNWNKQTMSFWHNKKWVTVKGMDTQGGAIATLQSIICKSRR
RSTGWWTYEDKCKEDGSIHTLASEQSRELELLLENYGGVFQEPTGLPPKRKKEHVITLKEGEGAVNVRPYRYPHHHKNEI
EKQVREMLQAGIIRHSTSSFSSPVILVKEKDNSWRMCIDYRALNKATVPDKFPIPVIEELLDELHGARFYSKLDLKSGYH
QVRVKEEDIHKTAFRTHEDHYEYLVMPFGLMNAPSTFQSLMNDVFRLLLRKFVLVFFDDILVYSQDWKTHMEHVEEVLRI
MQTHGLVANKKKCYFGQETVEYLGHLISKEGVAVDPSKVVSVTRWPIPKNVKGVRGFLGLTDYYRKFIKDYGKIAKPLTE
LTKKDAFMWNEKTQDAFDQLKRRLTTSPVLALPDFNKEFVIECDASGGGIGAILMQDRKPVAYYSKALGVRNLTKSAYEK
ELMAVVLAIQHWRPYLLGRRFVVSTDQKSLKQLLQQRVVTAEQQNWAAKLLGYDFEIIYKPGKLNKGADALSRVREDGEL
CQGITSVQWKDEKLLREELSRDSQLQKIIGDLQRDASSRPGYMLKQGVLLYEGRLVVSSKSVMIPTLLAEFHSTPQGGHS
GFYRTYRRLAANVYWVGMKNTVQEYVRSCDTCQRQKYLASSPGGLLQPLPVPDRIWEDLSMDFIMGLPKSKGYEAVLVVV
DRLSKYSHFILLKHPYTAKVIADVFIREVVRLHGIPLSIVSDRDPIFMSNFWKELFKLQGTKLKMSIAYHPETDGQTEVV
NRCLETYLRCFIADQPKNWASWIPWAEYWFNTSYHAATGHTPFEMVYGRPPPVITRWVQGETRVEAVQRELLDRDEALKQ
LREQLLRAQVRMKQIADKKRCDRSFEVGEWVFVKLRAHR
>GTWIN_pol#LTR/Gypsy 1793-4897 [Drosophila fruit fly genus]
SDQFFRERSRLPFIERQFHGRKLRILIDTGAAKNYIKPVKELKNVVPVNSPFTVSSIHGSNTVKQKCLVNIFGKTADFFL
LDTLTLFDGIIGFDFLAQVGAKLDTEKGTINYGSVVEELQHHSCDEVNFTNVNDATVPESVKTEFTAMIANRSKAFSASN
EALPFNTSVVATIRTSDDKPVYSKLYPHPMGVSEFVKREIADLLQKGIIRTSRSPYNNPTWVVDKKGHDEQGNKNKRLVI
DFRKLNEKTIADKYPMPNIPMILANLGKAKYFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLKNAGSIFQ
RAIDDILREQIGKSCYVYVDDVIIFSENENDHVKHIDWVLKSLCDANMKVSNEKTHFFKQSVEYLGFIVTNGGAKTDPEK
VKAIKEYPEPTNLYELRSFLGLASYYRCFVKDFAAIARPLTSLMKGENGSISKHMSRKTPIEFGDLQRDAFERLRNVLAS
EDVILRYPDFRKPFDLTTDASANGIGAVLSQDKRPITMISRTLKESESHYATNERELLAIVWALGKLQHYLYGTRDINIY
TDHQPLTFAVSDRNPNPKIKRWKAYIDDHNAKIHYKPGKDNHVADALSRQNINALQSEPPSDAATIHSELSLTYTVEATD
QPVNCFRNQIVLEEARFRLKRSLVLFRSKTRHLINFADKSTILEMLKEVVNPDVVNAIHCDLPTLASFQHDLIVHFPATQ
FRYCKNIVIDVTNRNEQLEIVTTEHNRAHRAAQENTKQILRDYYFPKMSSLAKEVVANCKICTKAKYDRHPKKQELGETP
IPSYTGEMLHIDIFSTNKKQFLTCIDKFSKFAIVQPVLSRTIVDVTGPLLQLVNLFPKIKTIYCDNEAAFNSETITSLLK
NSYHIDIVNAAPLHSSSNGQVERFHSTLSEIARCLKLDKKISDTTELILRATIEYNKTLHSVTQEKPVEILHSGPDDRCL
GIKDKLVKAQKNNIERCNPARQNRVFEVGDEVFVKNNRRLGNKLTPLCTEQKVQADLGTSVLIKGRVVHKDNLK
>Fatima_TM_gag#LTR/Gypsy 48-3334 via tfasty with RIRE2_gag, 1 frameshift and 2 stopcodons. [Triticum monococcum]
MAPSIINNDAVQGETFLPGQIFVFGGFALRANSLGHLEQIESYAPGHQVRFGSLNYTADIRGDLIFDGFEPQPSAPHCLD
GHDIALPPNSALEAAHTPVPTIDSEPTAPIEDQRLDVASGAAISEAIEPNSNPALRMARDSEEPDSSPNSEPPAPLPIES
DWAPIMEFTAVDIFQHSPFGDILNSLKSLSLSGEPxPDYGQQGWDTDDEEIQNPPTTHFVATVDDLTDMLDFDSEDIDGM
DDDAGDEQEPAHVGRWKATSSYDIYMVDTPKDGDGDGIAGDDTSKKQPKRRRQRRRSKSRQRKNGDSGTGDNTTPDSTEE
HPLQQESAQEDREASPHERVADKEVEDDNHMPPSEDEASLDDDEFVVPEHLAEQERFKRRLMATASSLKKKQQQLRADQD
LLADRWTEVLAAEEYELERPSKSYPKHRLLPRLEEEAPTSPAHDMADRPPRGCDREASRPSTQAMPRHRVKHTKARENAP
DLRDILEDKARQTRSIYGSRRHPTARDGDRHSGCNESSRAELNRQSSFKLRRDIAQYRGAAHPLCFTDEVMDHKIPDGFK
PINIKSYDGTTDPAVWIEDYLLHIHMARGDDLHAIKYLPLKLKGPARDWLNSLPVDSIGSWEDLEAAFLDNFQGTYVRPP
DADDLSHIIQQPEESARQFWTRFLTKKNQIVDCPDAKALAAFKHNIRDEWLARHLGQEKPKSIATLTTLMTRFCAGEDSW
LARSNNLTKNPGNSNTKDKSDRSRRNKQKPRINSDSNEDTTVNARFRGYKPSQRKRPFKRNTQGPSSLDRILDRLCQIHG
NPEKPANHTNRDCQVFKQAGKLRVENKDKGLHSDDEEEPRPPNNNGQKGFPPQVRTVNMIYATHIPKREQKRALRDVYAM
EPVAPKFNPWSSCPITFDRRDHPTSIRHGGFAALVLDPIIDGFHLTRVLMDSGTALNLLYxDTVQKIGIDPSRIKPTKMT
FKGVIPGVEANYTGSVTLEVVFGSPDNFRSEELIFDIVPFRSGYHALLGRTAFAKFNAVPHYAYLKIKMPGPRGVITVNG
NTECSLRMEEHTAALAAEVQSSLSRQFSSSAFKKPDTIKRARSTPQQDRLACSELA
>DGLT-A1#LTR/Gypsy 193-4506  [Dictyostelium discoideum]
MSNNENIIFSGDGKGLSFRKFKHLLLLIHGEEISKADIIRKLRNNALEYAATLDTDLTAMEIIEDLKDAFDIGDSDDLTE
LTKLGEYKYNTLDILIGKFLSKCSAVDISEKFKIQLFYSAVGTELGIEITKCAPKSLKRAIDIAKSCEDGSIRIKGRSMY
TGQLVAKTLQEFGNQRYLGSGSGYSATSPQYVTSQNEQQSIESEEISTPIFKNQYYNRSPQMSPQSSPYKAPQNQVNSIT
KFCKYCKKKGHVIQECWSKDKKNNYNENKQSYNNHSTNAITMVNDKTINSIGTDSMNAALLINDKNVRGLVDTGSSLTII
WESIAKKLNLKVEGKSFSVNSASNNEIKIVGSCDTIIKLGKASAKVNVNIVKDNDTSIDCIFGVDTLIGLKLIIDCKEMI
IKNLEFNVGTRLITRETKPIVCKIDLNILEKVSKPMAELLIKNEEIFETKLSKPGSLIDVEHSIKLTDENVSVYTPPYKT
SPADKEFIEEYIKDALDKGIIEKSDSSQYGSPIVLSRKNDKIRFCVNYKKLNDLTIKDRYPLPLISDCWYYLKDAKVFSK
IDLTSGYYQIKMKEEDKDKTTFVSHMGQFRYVVMPFGLCNAPATFQRYMNELLKDELRKSNIGFIDDCIIYSKNNEYHIE
HVKLLFEKFKEKGAKLQITKCEFEKEEIKFLGYIVSKNGITYDSSKFNELLKTPPPSNQKELMKLLGTVNYFRTFIKNFT
HLTSSFYPLLKKGVNFKWTDELENDRVKLFTTLAQTNLLSFPQDTDDNVIETDASIIGIGGVMIQNGKPVSYYSRTLNNA
EKNYSVTERECLAIIESIKYFKSYINGRKVKIITDHQPLKYLLTGKFTDRITRWTVLLQEYNYEIIYRPGKENFLADALS
RCPDRDQQPIDCDIPEKIFTITHYPVASPSTTILPRVLPSRSNQTSNVSPATTIQPPNSSSSNQSSNIPPTTNQSSNITN
QPINTSSMNLNQSLSNQATTARLLNSVPISINNDNINTTTPQFTQESIRKELEKENYYRAMYKYLEETRLPDNAQAARRI
LFESEFYSMINGFLCHGLKHTLSSKKSHFKHLQIVVPKTMTKWIMEIFHDSPLTGGHFGLLKTVAKIKERFYWIGMIKDI
KEFIDKCTTCLQIKRKYGPKEGLLIPIEIEPEPFNTIGIDFIGPITKDNAQVYLLVVMDYFTKWPEVFFTLDMEGETVAQ
LLLYEIYTRYGVPKKLVSDRGKNFLSNVVSGVNKLFGVHKLTTTAYHPQCDGQTENFNNTLIKMLKAFIGNELYGNWGEL
LRCVLYSYRITPHVSTGFSPFFLLFNRQPTLPLDTTLNVNFYSNSLRLDFADNYAQSVNNNLKRAFWFTKNNLDKAQELQ
KTNYDKGRRPTNIQTGDFVYLHTPYSQTSIGPKKFYKPWRGPFKVQEKVSDVTFKLDMGNLRDHKVVNIERLKKIFN
>Fatima_TM_p2#LTR/Gypsy #ReverseORF 7569-6691 via tfasty with RIRE2, 1 stopcodon. [Triticum monococcum]
GKWTVSSVTKGHVKKLRKAGYLSEDIAHRLPEEGxLLPTPRSHERVVFLPHFLCGLGIPLHPFVRGLMFYYGLDFHDLAP
NFILNISAFIVVCEAFLCIHPHFGLWLKTFNVKPKVVRSNQAECGGAMAGKIANVLCLEGSFVETLKGWQSGWFYITEPR
DPKWIVAPEFRSGPPTRLTSWKETGLSWGDEEEVTGLQKCIQSLGEQAAQACQRSPGHARPPDPSVSRTRLQFVGVQPGA
PPDSEQALRHNVQRCLEGANQRRRGSHIRLRRPRIQLAASCWRGKIFSSFTGC
>Gret1#LTR/Gypsy join695-2341 [Vitis vinifera]
MLSTPFCSHIINYEPPRGFLVPKFSTYDGTSDPFDHIMHYRQLMTLDIGNDALLCKVFPASLQGQALSWFHRLPPNSVGN
FRDLSEAFVGQYLCSARHKQNISTLQNIKMQDNESLREFVKRFGQAVLQVEACSMDAVLQIFKRSICPGTPFFESLAKKP
PTTMDDLFRRANKYSMLEDDVRAATQQVLVAGRPSGSNTERNTKPPDRPKPSDRRQEGPSRPKMPPLTPLSISYEKLLPM
IQGLSDFKWPRPIATDPSTRDRSRRCAFHKDHGHTTETCRSFQYLVERLIKAGHLKQYLRTDTGGRDVSQHNNPGAPRAP
VATKAVINYINGGPSDEEYDSRRKRQKLLRAASIRERINSIRPGLTGEGPRPIDGTIIFPPVDPTRTLQPHRDALILSLE
IGDFDVRRILVDPGSSADLVQASVVGHMGHSLTGLENPGRILSGFNGSSTTSLGDIILPVQAGPVTLNVQFSVVQELSPF
NIILGRTWLHYMKAIPSTYHQMVIFLTHDGQIDLYGSQLAARQCYQIAREAGANQEDASPPEPSIARDQQLLGPTDKDPP
AADPLQTIQISEESDHLTNISSLMTQEETQGMQNILRQNHDIFAWAHSDMKGIHPSITSHRLNVVSTARPVRQRIRRFHP
DRQRVIRNEIDKLLEAGFIREVSYPDWLANVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFL
DAFSGYHQIPMSPDDEEKIAFITPHDLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHSVEVYIDDIVVKSKTREQHILH
LQEVFYLLRRYGMKLNPSKCAFGVSARKFLGFMVSQRGIEVSPDQVKAVMETPPPRNKKELQRLTGKLVALGRFIARFID
ELRPFFLAIRKAGTHGWTDNCQNALERIKHYLMQPPILSSPIPKEKLYMYLAVSEWAISAVLFRCPSPKEQKPIYYVSRA
LADVETRYSKMELISLALRSAAQKLRPYFQAHPVIVLTDQPLRNILHKPDLTGRMLQWAIELSEFGIEFQPRLSMKGQVM
ADFVLEYSRKPGQHEGSRKKEWWTLRVDGASRSSGSGVGLLLQSPTGEHLEQAIRLGFSASNNEAEYEAILSGLDLALAL
SVSKLRIFSDSQLVVKHVQEEYEAKDARMARYLAKVRNTLQQFTEWTIEKIKRADNRRADALAGIAASLSIKEAILLPIH
VQTNPSVSEISICSTTEAPQADDQEWMNDITEYIRTGTLPGDPKQAHKVRVQAARFTLIGGHLYKRSFTGPYLRCLGHSE
AQYVLAELHEGIYGNHSGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDKCQRYAPIPHMPSTTLKSISGPWPFAQWGMDI
VRPLPTAPAQKKFLLVATDYFSKWVEAEAYASTKDKDVTKFVWKNIICRFGIPQTIIADNGPQFDSIAFRNFCSELNIRN
SYSTPRYPQSNGQAEATNKTLITALKKRLEQAKGKWVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIW
TNAAKQSDANMQLGRNLDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLVLRKFFENTTEVGAGKFQANWEGP
YIVSKASDNGAYHLQKLDGTPLLRPWNVSNLKQYYQ
>GORPI#LTR/Gypsy 193-2406  [Orpinomyces]
MINPENSNDETNYDTIIPESISEDELFEEDICAAMLPGSTINEEQLNKEDIINKYYYDLKIVFEKKNAEKLPPHREYDIS
IDLIPGGQLYFGPIYSLTTTELKTLKEYIKENLEKKFIRKSKSPAGAPVLFVKKHDGSLRLCVDYRRLNAITIRNSYPIP
RINDLIESFKDSKIFTRLDLRSAYNLVRVKAGHEYLTAFRTPIGHYEYLVMPFGLRNAPSVFQRFIQDVLNDVIGSYVQV
YLDDIIIYSKTISEHVKHVRFVLKLLIDNGLYAKLEKCDFHVAETTFLGFTVSINGLTMDQNKVKSVVEWPTPKNLKELQ
SFLGLCNFYRKFIKNFAKIMEPLRALLKKENNFNWNSEAEDAFKKLKASFTTGEVLIFPDPEKEFVVETDASDFAVGCVL
SQIGSADNWLQPAAVTLRDREDQAGKAMTQSYDEELLAIITRFTMYGGIHLEGAKYPVQVITDHKNLLYFKKPQHLNLRL
IRWSLFLSKFDFRIYYRPGAKGGKPDALSRRPDYKTELPPNINSVIKTDSFCCAINDNIQSLIEAQNADKYCKEVRSKIS
NKSNEIKSSLFSLVDGVLHFQKRIIVPSSLKARILKTFHDAPTSGHQGVDRTYEKLKRYYWWPNMKKDIYNYVLSCDTCC
RSKMRRHKPYGKIQPLPIPTKPWEIIGVDYIVYLPTSQGCTCIMVVSDHLTKMIHLVPCSDVPTADLTAKLLLYNVFRYH
GFPKIIVSDHGSQFSSE
>TguERVK3_env#LTR/ERVK 6214-7695 [Taeniopygia guttata]
SFFSVAFQLLTRLRPSSAVMSSASPILLALTIGLFIGASRAWIVPQPAANVWNTLANSIGQDHLCLSTSSASNPFLSCLV
GIPYPLDHLPFNFPKTVPAPRNRSTKFQNIQLKPPHEWRVWYRSLPVLDDEPQELSLLGSALAYTCVQFFMTREPHPIAK
SRSYLXIKQTMNDYTARKWCLKVIQIDAATNYEDQPRKLPKGTFFLCGNRAWAGIPSRLLGGPCTFGQLTLFTPNKTQIA
HWKEVNSTTNLARRKRDATFQNLDENCKXEIFHWAKAKSALITTFVPWWAIAQSLNELQSLECWVAKQANLTSAALSGLL
EDEKVTRQATLQNRAAIDYLLLLHNHRCEEFAGLCCFNLSSRAEDVQVSIDKMKGMXTKIKQETSGWLDHLFEEWGLSSW
AQSIAKTALMLLLTVCIFVIGFSVVKNLVLKTVLSSSASNHRATSSQSQSIQVCVAEIAPLTGPDTTEDDPEYEXMKDXW
FXDQNQKDCSPPV
>TguERVK2_pro#LTR/ERVK 2147-3175 [Estrildidae]
STXRTTACCHCCIKPKEATQVITTAAAHHLPALQETRTLCQKLSSKPEPETDQQTKKLSAQRVPTATRKDINIVGHKCDN
ASLLTNKGEGGXHGGGGEKNKNVKCXTNKVWQPLGRPRLVTAKGFHFRXTDWKVIVVDLSXSSQDLQAYDMELDSEYFVI
GDTAYTPPEIEIVPMTTKGKISSLMLLARCLHPPFYLEKGQILAQAIPIPVEITVEGKSPEVYWAEVVGEDKPSMACNLA
HGSEHLQVEGVLDTGADITVIPKTMWPSHWELQPVAGKLQGIGGTTLAKISKNVVQIEGPDGKSASVRPFVADYKAPLWG
RDTMSQWGVQLIIPKTPQDFRK
>TguERVK3_pro#LTR/ERVK 2413-3381 (pro-pol ORF artificially broken to give separate pro and pol peptides) [Taeniopygia guttata]
RGFKKLRSERSSPLRSDKNRVGRKTSSAGEEEGNTISPECSPPPDTSTGHDXKRPAKPWRVEPQYFKEDVDTIPREWLGR
SPDQPRPILNTHCNFPPYRLALTESIHLADSDWRFVTIDTESPGTWRKLRCKYIVLGDTKFTPLNIHIAPCTTSTNPEKL
LLWLYCAEPPMFLPKGQVIAQAIPVTGSPVFPEHLWKKSAAQAHKVCAAHIMGSDKPRMGCNIWHGDQHRWLNGLLDTGA
DVTVIPSKDWPSRWELQDVAGQIQGVGGSQLAKQSKNIVQFVGPDGQSAYIRPFVLDYTEPLWGRDLMAQWGAKLEIPTP
QV
>TguERVK8_gag#LTR/ERVK 320-3419 via tfasty with TguERVK9_gag, 4 frameshifts and 6 stopcodons. [Estrildidae]
MGNQASAADRTVLSAWQASIPQMRARVSEKELIRLLIWARDHRFSVDIRRAFDRKLWRDMGRCLMQQMHQGDAEASALFS
VWGRVYVPLREGAPGSSDSEGVLSGSDDAASVSSGLSGRRDTRTCRATPDPFPGAERGVGSGGTPRKPPVSPGIPAGPSA
AxPHGYAQPGKFLPANQPQITQQTVPRPAEQAQSAFGTVPVPAPAFQGGAGGPSSQPSGSAHPPLHGLLGAVSSTPQQPG
LGPSVDQTAPLVQPLVGLRSAAGGRGGAARGAGRCGGSGPPAPLLSAMELAQMCGPRSQLPLGAGMQPFAHSLAQPSLPV
GVQVLPVGAAQLLPGTSRCATCAPTDxISFTVPASMVQHHLAGGTSVSFSALPAPGLTPALGAVPALHTTPAVAPALPAI
GTGALPAASAAGTVLPFAVPAAPAAxAAPLAPAPPPSPRCLSSSTSASLARWCFSARDACCAPAASAVPVIDDRSFNERH
IHGVASSCxPFRLAVCDGGIRRAAGDVPVPAPSPAAGPPGSGAVGSGAQPSASASQSIAACPASVSPVSPPSLVDRGLSH
TPLSQEAGSDSDDLISIPSRGPDRLSERRHGRGRxASQRDLWTLPPCQVSVRSINPCRFWDAVRQSALEACDWDLLERVG
KPGGAVLNPPLKEDETVPSCHLVPLSLSGGAKGGGGDDASVQRKLQAFPVHKAVPNLGQQDKHEVTACKVVQDLQDKVAK
YGLGSAPLMQVLRVINTDLLAAYDIKHLASVLFQPVQMDLFMSNWRRMADRVASENQHYPQTDPRCCLGVDALMGLNSFS
NPDFQATWHHIVLEQAQKIGFASLLKTMETAGLRQRYVKIAQGAKxLFLPFVERLAAALEKQIDDETLRQGFVQNFGKGQ
CNEDCRKIIDALPGDPSLTDMVEACSKVGTVDHKMSVLAASLRADLSSSGTGWHKKGKKKKGKQVQGTKGKKGSDSNFLC
SRCGRPGHFAKECRSTYHAYGKRLTGSGNGGRSTQGNCAPTQVIPQNTAPVQGAPVNSTQASTALPGWMYTP
>TguERVK5_env#LTR/ERVK 6647-8074 [Estrildidae]
NFILRSKATFLNWYIWVEFLPKISSRKRMERNRMICWHWLVLIASCSADLPVEQPKTNVWVTLAKAAGSDTICLSNSEPE
KPFSTCLVGVPVKNLPLVKKQFNSKPGEIDSGGNPVLNWSIWVKELPKAVSEPQELEILGSLTMDFCITFTANDWREGDP
PKYNVTPHYSAYRNSSFWCNYSDSWDVLSKADQYPRQLPKGYWFICGDRAWQGIPSRLEGGPCSIGMLTVIAPTAKAVIK
KKHRGTRSARYYDEKCKSDFMPWNAXKRVSAGLFLPQLASAVALKQLDRVGCWLSKQTNATSTAISDMLTDVNSVRHATL
QNRAAIDFLLLAHGHGCEEFEGLCCMNLSDHSESIHKSIQKLKDLTAQIKEDGGSWLDNLFQEWSFAPWLRNLCKIGLYV
LGVLVAILVVIPCILRCVRHMMDKAIKEVFIIQEREVGNGFTESSRTLTELVDEGIEMEEGFELRPWNRRDFFEQ
>TguERVK2_pol#LTR/ERVK 3151-5883 [Estrildidae]
DTPGFSEVATVERXAHKLKWLDNTPKWVAQWPLSREKLEALEKLVEEQVAQGHLQETDSPWNFPVFVIKKPGKDKWRLLH
DLREINKIVEDMGPLQPGMPSPAMLPRDWKLAVLDIKDCFFQIPLHPEDAPRFAFSVPTVNXEAPMKRYHWKVLPQGLKS
SPFICQQYVAALLSPVRAERKDAIILHYMDDVLVCAPNDSILQYTLDLVVKVLTSAGFQLQENKVQRMPPWRYLGLEISA
RTIVPQKLEXNCNPRTLADLHSLCGSLNWVRPWLGLTNEDLEPLFNLLKGERELASPRELTPEAKTAIEKVQKALSERQA
HRCDPNLPFQFIVLGKLPHLHGLIFQWIEGQKDPLLIIEWVFLSLQRSKTITRPQELIAKLIQKARVRLCELAGCDFACI
HLPVRLSEEGRNSPERLTKGMFEHLLQSSASLQLSLDSYRGQISVHAPSHKLFNEEFHLIPQEKRSRRALRALTVFTDAS
GASHKSVMTWRNPQTQHWEADVELVEGSPQVAELAAVVRAFERFSEPFNLVTDSAYVAGIVSRAEQAVLREIENEHLFRL
LSRLIYLISHREHPFFVMHVRSHTDLPGEIAEGNRKADSFAAPVEKAXLPDVFQQAKLSHQHYHQNVPGLIRQFQLTRSQ
ARAIVTNCPNCQLQAVPSLGMGVNPRGLSSCEVWQTDITHIQSFGRLECVHVSVDTFSGAVYASAHIGQKAAHVKQHLVQ
AFSVLGVPKTIKTDNGPAYVSKEFLEFLQQWGVEHKTGIAHSPTGQAVVERAHQTLKQVLKKQNSSAPWMSPREKLCKAM
FTINFLNCSFENMSPPVVRHFNSGXQFKLSQHPPVLIRDPETWETKGPYELVTWGRGYACVATPSGPRWIPQKWVKPFVP
KNPGQTEGDKKQVADASKRRRRRMGEEEXS
>RNIAP1b_env#LTR/ERVK 5440-7206 [Rattus]
DPGELFVFFHRIMKIQFGFRDDLLGISRQRTKKMTTLVILMLIQGVPIKVQSELRWGIMSTFPLPMPVMYNAQVFPRFFT
TNKELGLAYLPLDSQIEQVKENRTIPLKGSLCFGIFNKISSDLPCIMLSNQSSAWLREATWGTGEEDIVANATVLYGWWP
YINSSTCPLRQPKLAPFCRGTQDEKLTLPWTGCQSRDSAWAVQNFFSFSPDLGGGVNFTTIDPRRSNNNPFDQWMLCGVN
GSCTDLTPMAMLLGGKGEKGRLSFSWTGNIHPSASVWTATRIKYKPYWSTGFNPAPVCVWPPFVWIISNATKVSKLNCTD
GSCFYALCWDASQYPIAVVTRMPRFIPVPVETPGTLTLFRGKRDFGISAIIVGIIATTAVAASVTASALALSNTVQTTQT
INDLSATVSVALDRQASANTQIQGGLMLVNQRIDLVQEQLDILWQLAQLGCEXKLPGLCVTSIQYEQFTKAANLSKTLSQ
HLLQNWTSDFEQTLRELRAAIIQVNSTRLDMSLTEGLSSWITSAVSYFKEWVGVGLFGAVLCCGLVLLLWLLCKLRFQTK
RDKIVIAQALIALEQGASADIWLTMLKQ
>RNERVK22_env#LTR/ERVK 5799-7934 RNERVK23 close [Rattus]
ELLTHQCPEWSCRLLLRLIPFLFQMLLRKKILLILLLTEVISIPPRQQPKYSNNRHMPWNYTWIVLTERQDVAWSISQIS
TAIWWPTSLHPDLCKLALGAGAPWGLEHQLELQVAPEDNMPHTQSQQTHNLFISTHRSAQPGCDNAIRRTLLQATDFYVC
PGYHRGRTFHNKCGGESDHYCASWGCETTGTTYWKPTSSWDYITVSRNFSPPSNYLHRNPLCKSSEPSTRGWCLPLDIKF
TNHAKGKDWAHGFSWGLRLYQVGSDTGLTFTIKLLKEPVHASKPIPIGPNPILVPPLQSPSEPQSPTSASHVPTLLVSSP
QNLVLTLINQTFLTLNATSPDLMDNCWLCYHSQPPFYEGIAIPGTFFPTNDSRHCRWQPGEWNGLSLSQVSGLGLCVTLI
TPPLQYAHLCNLTLAPDKNSQYLLPPNDAWWVCLDGLTPCLSTEAFSPMKSDFCILVQLVPRLIYYRSEEFFHLWDQSSD
LSPTLVRQRREPISAITISVLLGLGAVGAGTGISSLVLSKSRYQELSATIDADVQRLQQGVDDLSDSLSSLAEVVLQNRR
GLDLLFLQQGGLCAALKEECCFYVDKTGMVKESMKKVREGLEKRKKEREKDESWYQNWFSTSPWLTTLLPSILGPLVGLI
LLISFGPWALSRLTGFIKRQIDDLMAKPIQIHYHRLAMEDQQTQDKNIIPPRALPTPISTQPKKGHFCPRT
>SRV_MM_pol#LTR/ERVK 2687-5365 [Mus mouse genus]
GPWQHWKKRLGVFLTGAVDSAAPPGRCADPITWKGDSPVWVDQWSLTTEKLQAAQLXVQEQLQAGHLEESNSPWNTPIFV
IKEKSGKWRLLQDLRAVNAXMILMGALQPGXPTPVAIPLGYYKIVVXLKDCXFSIPLHPEDQKHFPFGVPAINFRKPMKR
YQWNVLPQGIANSPTLCQIVVTSAIDDIRTIWKQIYMTHYMDDTLIAGKDGRKVLQCFDDLKTALQTAGLQIATEKVQLQ
DPXSYLGFQINGPRIINSKATFRTDSLKTLNDFQKLLGDINWLCPYLKLTTGELKPLFDILKGDADPXSDRXLTEDGRKA
LQKVESAISSQFVTHINYSKPLYFLIFNTKLTPTAFFWQTAPILWAHLPSSPKKVLYPYYVAVADMIILGRDNSQKYFXK
DPDVIVQPYTRHQVDWLMQNSEVWPIACTSFAGQIDNHYLPDKLVQFCNXHGEFVFLSRTARAPIEEALLVFTDGSSSGT
AAYAFKDQVISFATSSVSAQLVELHAVIAVFQAFPNQAINIYTDSSYLAQSIPLLETAAQIKHSSEAADLFLQCQQLILR
RKCKFFIGHLRAHTGLPGPISEGNXKADLATHVAAVTLSDLPSNLDQAIRAHELHHLNSQTLKIVFKITGEQARQIVKQC
RSCITLLPVPHLGINPKGLIPXSLWQMDVTHYNEFGNQKYIRVCVDTYSGFIYATLQTGEASKHVITHMLATVTVLGVPK
QIKTDNGPGYTSSSFHQFCEKLGILHKTGIPYXPQGRXMVERAHQTXKHQFEKIKKGEWYPTKGSPRNILHHTLFILNFL
TLDSEGKSAADRFWHPDTKKNFATVLWKDPLTGTWNGPDPVLIWGRGSVCIYSQTADAARWLPERLIKQIDNNNRSREEK
PPENPVSSLQGT
>TguERVK2_gag#LTR/ERVK 546-2321 [Estrildidae]
MGTKLSLEQKSTLTHLSNILNDVSFPNKLLLRFVCWLQTEIPNFTVQXLNSLXFWDQIGQILTLKVENGEHKVSRFIPIF
LQARKKILEAEKSIQTQXHSSNTPFSPSCPPPQYPSPENPSPTPYPPLTPCFSEKYSPEFVLKSSAASLEHTRPDNGGRH
VLSPARAAPPPAPPPTRIPLLPPPSATPSAPTPSSLPSSDACLSPTATPHPPYQCQPPGCPGNGGGAGPCTPPSPSAEDG
RAGAGHGSPAAQSRGGARVCTAEQTAREGGGELPLTGAGGARGGHKPASTEESIPSVAPVVYLGRRNGTRTYQPLPYRDK
TEICKVQREFGRSSEIFKGMMRATFNSNEMVPKDITDLFKCLLTPSEYEIWENKWKLALETVLQEIQRTPSDATDXDGQP
XTIHHLCGTGDIQCPEKQTRLLSRSVLEKICXAAEKTLYQLPGTEVECSYINIKQFPSESFLQFVDRLRSQVEKQVQXTX
VQTELIKEMAQRNANETCRRILLSLPLDPAPSLAQMIXACARRAELLDTPXSHRAPAELQPVATAASSPRKPPRSSQQLQ
HIICLRCKKPGHFARNCPQNQNQRQINKQKN
>TguERVK1_pol#LTR/ERVK 2746-5316 (ORF starts at 2005) [Estrildidae]
KFIMRATAVHPLLPIKLTWKSPDPVWVEQWPLSKPRMTALLELVDRELQKGHXEPSTSPWNTPVFVIPKRSGEGYRLIHD
LREVNKTIQPMGPVQTLLPANSAIPEGQPCAVLDIKDCFFSIPLHAEDKERFAFSVVFPNGERPNLRFQWKVLPQGLVDS
PTICQITVDRALMPVRHSHPAATIIQYMDDILVAAPSAGQVDHLVSTITETLQANGFEIANTKIKRGPCVTFLGVGITNS
YVTPPRIKVRRDIKTLHDMQRLVGSLQWLRNIVLVPPEVMDPLYDLLKGKHPWDPKELTPQATKSLDFIERQMSTSLLAR
WNPSVPLDLYVHFTQKGGVGALAQGPSEKSQPIQWVVLGRPTHAFSPGVECVANLVMKGRRLALRHLGTEPARIHLPFRK
RPTTESTAISEHLALALTGFGGEISYATKPPWTQLLTIVDIDVPPKVMDRPQPGPTVFTDASSMTSTAAAVWQAGETWHC
VKTCDPTLSVQQLEAAAVVLACGLFQDEHLNIVTDSIFVAKLCLAMSRPGVSTSTTASMLEEALSSRQGTVSVIHVNSHN
PVKGFFQTGNDKADAAAKGVWTLQEARQLHESLHIGAKALAKRCGISTADARHVVATCPHCQKSPLWTGGVNPRGLKASE
IWQSDFTLCELLKPRAWLAVTVDTYSGVIIATQHLKPNSKATIQHWLTVMAWLGIPKQIKTDNASNFISKSVREFASVWG
ITLAQGIPYNSTGQAIVERANQTLKAKLEVLAKAEGFANSIPSGDQTRMLATALLALNQFPRGDEANSPIRKHWATQTLE
EGPQVMVKNELGEWERGWRLVLTGRGYAAVKKEDRIRWCPLRSIKPDLQNETNGKL
>TguERVK9_gag#LTR/ERVK 102-2642 [Estrildidae]
MESSEGIREESVALDVWREVLKRKRVPFYWDDFERLFLWAREQGFFPSLAEALPWENWSPVGDRVMDALPDNRFEDAGPL
MMLFKRLDAIWQGSEIGSSRASLGDLSVSDGDAGEAGXLYSCPDSPSPGGXEPEGGSSSGVVRAPSPLAPGVRSVEPVRP
PRPAPRRRRSGLGGKALSLCAFPALGGERGPVDQPPPRIASDSVTVNCPNCGVTFPLEKTQARSPGPVSGSSSEEEPAPI
PELARPAGHAQAVGAAKGGALVTVPSDPAPAGGQPAPSRLMGAVPTGRLRGAGPTLLGGVPDSLVSSRGDVSPRAASPSS
PRPSPVPGDGSAALGLRSAPPPAPAAVPSADTADGTAGAPAGSVPPSPPAAGAGTAAQRGAGVFTFSATADAAGGRPVTP
RGRGSSQSTLWTLPACQVTVRPKDHGRFWQEVLDKAEEMCDFGPSRSLPDQGEGSSGSADAAGGVVSSDVAPPRSPGAAT
VPESTGHDTVDDAALPGGPQAFPVLRGVTHNTHQPFSFKVLKEIRDTVAQYGVGSDEVMQTIRLLVADLLTPSDIRSVAQ
ALFNPVQFDVFEDKWAALVASAVRKNATRGQQDPRRVATADMLMGTGNYVDPQGQAGYNPLVLEQCRTLGLAAVIQTLEM
AAPMEPFLTVVQRADESFMDFASRLTASVERQVVEPELRRMVLARFARIHCNAECKRVIQALPEGATLSQMAAACADLGP
SVRKADAWAAAAQPVWAAPQGWQQPRGAAQASTKRGKKAQKGKIPSYVCGRCGRPGHPADVCKATVHVNGQALPGPGNGK
RSAKGGRAQTQVPLQTPEPMEVCSASLSPAPAGQQVWMSAQQQQSC
>GGERVL18_pol#LTR/ERVL 1616-4993 [Gallus]
TRDASPPRASRWDRRPYVELTIFWSRKNIQRVMALVDTGAETSIIYGDPTKFDGDRVMIGGFGGQTIPVTQTWLKLGVGR
LPPREYKVSIAPVQEYILGIDILWGLALQTTVGEFRLRQRCISVRAVQAILRGHAKHEPICLPKPRRITNVRQYRLPGGQ
DEISRTVQELEKVGIIRPAHSPYNSPIWPVRKSDGTWRMTVDYRELNKVTPPIHAAVPNIASLMDTLSREIKTYHCVLDL
ANAFFSIPIAEESQDQFAFTWGGRQWTFQVLPQGYVHSPTYCHNLVARDLANWRKPDNVNLYHYIDDLLLTSDSLEAVGQ
AADSLTTYLQERGWAINPQKVQGPGLSVKFLGVVWSGKTKVLPSAVIDKVQAFPVPTTPKQLQEFLGILGYWRSFIPHLA
QLLRPLYRLTKKGQLWDWGRTEQDAFQQAKLAVKQAQALGIFDPTLPAELDVHVTQDGFGWGLWQRQSSVRTPIGFWSQV
WHGAEERYSMIEKQLLAAYSALQAVEPITQTAEIIVKTTLPIQGWVKDLTHLPKTGVAQAQTVARWVAYLSQRSSLSSSP
LKEELQKILGPVTYHSDAPKETLVAPPEKSPVQEGKYPIPEDAWYTDGSSKGNPSKWRAIAYHPSTETIWFDEGDGQSSQ
WAELRAVWMVITKEPGDGILNICTDSWAVYRGLTLWIAQWATQEWTIHARPIWGKDMWLDIWNAVKHRTVRVYHVSGHQP
LQSPGNDEADTLARVRWIENSPSENIARWLHQKLRHAGQKTMWAAAKAWGLPIQLSDIAQACRDCDACSKMRPRSLPETT
AHLARGHNPLQRWQVDYIGPLPRSEGARYALTCVDTASGLLQAYPVPKANQAYTIKALTKLMSAYGTPQVIESDQGTHFT
GAMIQRWAEENNIEWRFHLPYNPTGAGLIERYNGILKAALKTDSQSLQGWTKRLYETLRDLNERPXDGRPSALKMLQTTW
ASPLRIQITGTDNQVRPQIGNENNLLLPAPENLXPGTHRIKWPWKVQVGPKWCGLLAPWGRLLEVGGSVVPPVIGTWPTD
IVVNTPVFIAKGTPIMSLWQIRTPPLVPDIVMQPQTSGQKVWYRRPGHAPVQAEVLTQDRNTACILPWRADLPLLVPLKH
LYYSP
>FFV_bet#LTR/ERVL  gi|9629929|ref|NP_056916.1| bet [Feline foamy virus]
MASKYPEEGPITEGVEEDFNSHSTSGLDLTSVGKNPEHPRRILLVLQHLIAYAEATIKKQDVPGPLLPILSPYVMAWDNP
QNVVTRLVNLGESWKKYLLSPGWKDCGERDLTMLTRELLVPGIGLVQIAATLTKTYVLMCNGRCITGSRTDPDCDPLFCK
LLCWKQNIQDPRECNLEEWCLYSLDPEHDPLWDPKMIVRRHRNLLPYCMRPFLIWMNYISHNPLTQQCIMMKTLNMLWRA
QADDPSDVASLYPRVKVFKASHFDIFGSASGNSEERVSWAKENSHRGEYSLLPSSDDEEEEMSEREELLCHINQCQQKLF
YPGGTTDVLGMESNVWLTKFVNIKFPKGTKVILPDGRKFIACDPELKPLLQELKFLDRATSESSDSE
>HERV16_gag#LTR/ERVL 42-1779 via tfasty with ERVL-B4_gag, 1 frameshift and 5 stopcodons.  [Eutheria]
MGFWSWITRXQAGNEDSITXGRWSIDSLWHKVVVQLLKLSLVVNWDGVLVKRERTSWCNASGVxEIWDELXTWKDNGIGW
LSLSLTDTLEKNNKKLRAINWQLKTKHESQRASLVAYKEALISCSGXAEKPEDQTQNLIKVAKLQRRLNSQPRQVFYAXV
SAPVRQERDPDTRNGDVWIDAPKNLESPDSPEPFEPAEVTYSSLLRASIRFXLYGKTVRRPLPXQDNMGFPQDLPPPHLL
ATRPITRVKSQRNLAGXVLGLIRKERDYTPKELRDISSQHILAGPGEYPRDWILRTLDQGGRNIKLDKGEFIDLGALSRD
TGFNTLARTPGDGANTLLGWLLEAWRKRWLTLSEVEMPELPWQMVKKGIKKLREVGMLEWIYYVRPEDPPEDYVLQEDSG
DAXFTKAIRNVLERGAPASPRSSMVALLCRPGLIIGEAITELGSLIAVGVIGLxRNRGQVXALGRQKQGGRKYHNALQGR
SGSRXGLTCGELWXWLIEHSVPRGEIDXXPTEDMDSQWDMVSYGQERWAANKGVLFNxSKRKKRRVXXxEAEGGRPNKKS
xSLAQFPDLSQFSDLEPID
>THE1_gag#LTR/ERVL 49-1401 [Primates]
MWKRLWNWVTGRGWNSLEGSEEDRKMWESLELPRDLLNGFDQNADSDMDNKVQAEVVSDGDEELVGNWSKGDSCYVLAKR
LAAFCPCPRDLWNFELERDDLGYLAEEISKQQSVQEVTWVLLKAFSFKREAEHKSSENLQPDNAIEKKIPFSEEKFKPAA
EICISNEEPNVNPQDNGENVSRACQRSSRQPLPSQARRPRRKKWFRGPGPGSPCCVQPRDLVPCVPAAPAMAKRGQRTAR
AVASEGASPKPWQLPRGVEPAGAQKSRIEVWEPPPRFQRMYGNAWMSRQKFAAGAGPSWRTSARAVRKGNVGSEPPHRVP
TGALPSGAVRRGPPSSRPQNGRSTDSLHRAPGKAADTQRQPVKAARREAVPCKATGAELPKTMGTHLLHQRDLDVRHGVK
GDHFGALRFDCPAGFRTCMGPVAPLFWPISPIWNGCIYPMPVPPLYLGSN
>MLT1H_132-1262#LTR/ERVL [Eutheria]
KSGKETAGRGWKNGKETVSGGWKSSEETAIXGWKKGNXCYVVAKXLAKLLPAVTWKIENVPNELVDLAKEISRQNVESVN
WLLLAAYDKVXXERDELKKELFSLQAEFRGNIEDPGLAGLENKTVSHLQSLQPAKXSQSKKWPQGKDQIKGVAVRPFVKT
SERXKAVPSRPSQLDKRASKNLKGIVPQQPDMQPKVERGLSRKXLWVWLLGXGVDXNQIHRKPTKFLRELYWQKHRQLGL
KGTETVQNEKRPLGPQLSTGRKQAEKATQLQTWAISYGKGRTSQRAEPRAQRAEPRAVENNGLGNHSQGAEPGPNQGTFS
APRVGEPGNMCPAGFQNCYGPVTAMCLPFSPFLNGSVYCSYPVPVSPLYVGCVGGR
>ERVL-E_gag#LTR/ERVL 45-1721 via tfasty with ERVL-B4_gag, 2 frameshifts.  [Eutheria]
MGIWSWFSDLIRFKGINDPAASGKXDTGSPWHAVAIKLLKLSSIXTXNQVPIEGKALGDQVVAAIEHFSGNKEYXDVGWL
LLSALENLEKENDEFRALNSQLKXQVRDQKASMTALKETLISCSYRXEISENQTQSLILRVAKLQCKLNSQPRRVSYVKV
RALTGKEWDPEXWDGDIWADSDEAEXLELLNSAEPSLPVEAALSPXSEEXSLPLPEEXVMASPEVIAXQGXADPPQDLPP
XPLIASRPITRLKSRXAPRGQVQSVTHEEVPYTPKXLQDFXNLYQQKPXKYVWXWILXMLDQGGRNIMLDQAEFIDXDAL
SRDSGFSVLARVAGSDSNXLLGWLTKTWTQRWPTLNEVEMPELPWYTVEEGIQRLREIRMLEWIYYVRPAHLHPLTMSPG
GSRDTPFTKALRNTLVRGAPASLKSSVVAILCRPGMTVGNAAIEMDSLNSMGMMGSRGGRGQVAALNYQRQXEHGXCNGQ
QSQSSNQNGLTCRDLWCWLIDHGVPRTKIDGQPTKALLDLYKQKSSRSGEQKSDLNHNRESWLLNXFPXLSQFAVRPLE
>TvERVD_pro#LTR/ERVK gi|7107372|gb|AAF36394.1|AF224725_2 protease [Trichosurus vulpecula]
YRRQTPPPVVGKRLAGSAPDPSRTGPASHGDPPCPQLSRATAGSAGVDLCATAAAILRPEDGPQILPTGVFGPPPRGSFF
LIIGRASTTLQGITIHPTIVDNDYAGEIKIIASALKDTVRIQPNQRIAQALPLPMNTTFPASKNKRGNSTPGSSDIYWAQ
ALSQERPTLMLKIQGKSFMGLLDSGADSTVISEAHWPPAWPLQPSLTHLQGIGQSSNTMQSTQLLQWEDREGNRGTIRPF
VVPCLPVNLWGRDILSQMGVIMCSPSSVVTEQMLSQGFLPRQGLGKNKQGITQPLHIQSHPDRSGLGFQTHFS
>TguNERVK10d_env#LTR/ERVK 3968-5234 via tfasty with TguERVK5_env, 1 frameshift and 1 stopcodons. [Taeniopygia guttata]
MFRIKIVSFMLDRAFKNLRRMWWASMFLLSSVLVVEVSGILDIDKRENMWITWAKQTRQDxFCLLLATPSNPFSTCLIGV
SLGPMAEFKTWTRAQINLNSTLGAQAVAFVQNLKFTDDSLQEFGLLGSVPGNYCLIFGSYATKPTQENGKLTDDDTWLSP
RSPLYYNYSEYCNNSTQSVTPPRGGAGKLPPGTFLICGDRAWSAVPQNARGGPCYIGRLTLFAPTIHQVLELPQKTQRAK
RSVLQMDPNCKDIVSLWGRASVVVASLFAPGVASSKALTQLRTLACWTGKQINITSKLISELAADVDDTRHAVLQNRAAI
DFLLLAQGHGCEEFEGMCCMNLSDHSQSIYKQLTQLKDNMKKLTVVDTPFDNWLNSLGFSGWVKDLIRFGIVLFFIFIVI
LIVIPCFLQCVQKLVHRAFTPA
>ERV3-1_XT_pol#LTR/ERVL join1794-3284  [Xenopus (silurana) tropicalis]
MKPGDQRPYISVAIYWQGQSKPQTVTALLDTGAEVTLFHGNQKRQSAGMVAIEGLGGQHTLAHKVHCRLQIGKGPIFKAR
VLISELPDNILGMDILRGQTIHTDAGMYVFGTSVRSFSVSAVKPILRGHAKWTPVYIPPPKHPVNLKQYRIPGGHKEITE
TIQALLEVGVFRPAVSPFNAPVFPVKKKDGSWRMTVDYRGLNKAAPPLAAAVPDIVSIVEDIAQTAGDWHAVLDLANAFF
SIPIAEESQDQFAFTWEGKQYTLTVVPQGYMHSPTLCHGLVARDLAMLPNMDCKFYHYIDDVMISGSSEEQVRKDLQTVV
TYMQKRGWAINPEKIQGPATSVRFLGMIWAGPVKSIPQPVLDSIAALKPPKNVKEAQSLLGLLGFWRPFIPHLGLILRPI
YNITRKKTEFTWGSEQQLALDTAKETVRTHHSLGPIHPDKPFFLDVAVTDHGMSWGLWQKGPNPRDRKIPLGFWSKQFST
AQKKYNKLLVLLTLNLMAIFNCSEKIQQIAGFVNFESNVNQLPPLHAEESLFKEAPPWIELSAEDKLRAWFTDGSAKVTY
KGRIWTAAAFQPSSETIIHQTGEGGSSQYAELQAVYMVVQETSGDLIIYTDSWAVFKGLTTWLCIWKKDNWQVNGKELWG
GPQVWDFLWCQGKKRCIQVGHVNAHTGNLNNEIVDGLAQVSTAQQEETTLEVLGKWAHSQTGHKGVQGTWQWAQQRGIPL
TQIQVKDIIAKCPVCQEAKKWPPLTPLPGKIHRGQKPGQVWQVDYIGPLPGGRGGLKYCATAVDTYSGLVQVFPTKSADQ
KTTLRLMQLLIQHYGMPQEVQSDNGTHFTGQTVKQWAEDNGVYWVFHIPYYPQGAALIERMNGLLKEQMRKLTPTHTLRG
WDKVLQEAVYLLNNRSVGHFTPIQRMLGESGENSSDWVVTVTTKGSTVPLSQSIPVFIHKDLVVGGEEEHTMLQITSISV
PTGILDIDPTCDLQFIPDFDLTTQCDWDVDVRKDELGEYCVTIVPFGRAQFKKGQKIGQIVILPKRLQVKGNIYSTQLGT
KVWIAPSVTDRGRKTGRKGEIVAWGPGSTALVLIDAEDKPVYVPLHRLLPLP
>ERVL-B4_pol#LTR/ERVL 1785-5336 (HERVL pol close) [Eutheria]
RGGRVPLRKDPGTLPKIYTVNLSPSLPQRDLRPFTRVTVHWGKGNNQTFQGLLDTGSELTLIPGDPKYHCGPPVRVGAYG
GQVINGVLAQVHLTVGPVGPRTHPVVISPVPECIIGIDILSSWQNPHIGSLTCGVRAIMVGKAKWKPLELPLPRKIVNQK
QYRIPGGIAEISATIKDLKDAGVVIPTTSPFNSPIWPVQKTDGSWRMTVDYRKLNQVVTPIAAAVPDVVSLLEQINTSPG
TWYAAIDLANAFFSIPVNKDHQKQFAFSWQGQQYTFTVLPQGYINSPALCHNLVRRDLDRLSLPQDITLVHYIDDIMLIG
PSEQEVATTLDLLVRHLRVRGWEINPTKIQGPSTSVKFLGVQWCGACRDIPSKVKDKLLHLAPPTTKKEAQCLVGLFGFW
RQHIPHLGVLLRPIYRVTRKAASFEWGPEQEKALQQVQAAVQAALPLGPYDPADPMVLEVSVADRDAVWSLWQAPIGESQ
RRPLGFWSKALPSSADNYSPFEKQLLACYWALVETERLTMGHQVTMRPELPIMNWVLSDPPSHKVGRAQQHSIIKWKWYI
CDRARAGPEGTSKLHEEVAQMPMVPTPATLPSLSQPAPMASWGVPYDQLTEEEKTRAWFTDGSARYAGTTRKWTAAALQP
LSGTSLKDSGEGKSSQWAELRAVHLVVHFAWKEKWPDVRLYTDSWAVANGLAGWSGTWKEHDWKIGDKEIWGRGMWIDLS
EWAKNVKIFVSHVNAHQRVTSAEEDFNNQVDRMTRSVDTSQPLSPATPVIAQWAHEQSGHGGRDGGYAWAQQHGLPLTKA
DLATATAECPICQQQRPTLSPRYGTIPRGDQPATWWQVDYIGPLPSWKGQRFVLTGIDTYSGYGFAFPACNASAKTTIRG
LTECLIHRHGIPHSIASDQGTHFTAKEVRQWAHAHGIHWSYHVPHHPEAAGLIERWNGLLKTQLQRQLGGNTLQGWGKVL
QKAVYALNQRPIYGAVSPIARIHGSRNQGVEMGVAPLTITPSDPLAKFLLPVPTTLCSAGLEVLVPKGGMLPPGDTTMIP
LNWKLRLPPGHFGLLMPLNQQAKKGVTVLAGVIDPDYQGEIGLLLHNGGKEEYVWNTGDPLGRLLVLPCPVIKVNGKLQQ
PNPGRTTNGPDPSGMKVWVTPPGKEPRPAEVLAEGKGNTEWVVEEGSYKYQLRPRDQLQKRGL
>ERV3-2_AMi-I_2p#LTR/ERVL 1589..4873[Crocodylidae]
GVRPARPPKKGATMGAVAGRGPVSKVNIGPLIRIPVQIQLGKSEKSIDMLLDTGAQICILDSADWKGEKGTPYQVIGVGG
TRRPGHLVRATFALPNGSKVTAAAVILKGGPSLLGLNVLRGQRFALERENWQFGCAVPHREPEETAITAVTRCSMIPLTL
PPMKGVHRPQYRTPPEATQPIQCIISQQLEDGTIIRTHSPYNNPVWPVRKPNGGWRLTIDFRALNANTDPLTAAVPSLPA
LTESIRCYGPAWMGSVDIKDMFFAIPIHESHWPVFAFTWIGQQYTYTVLPQGWIHSPTLAHGVLATIVHEVQEKYPDVRM
WQYIDDVMVGSQDREAATKAFESLKEKVRTFGFTLSEQKIQEVGPQCEFLGIEWQNGGPTIPTEGLRSIVETPTPTNVKE
LQAQLGALNFWRMHVPEFSVLARPLYNLCKKRTKWEWGPEHKYALRALKEAVTVHASLAARRPEGELWLHIGVSEGGPHW
SLWQKESSEAEGKPLGFWSRGWRGAEARYTLLEQMLCAATAALEATEALRGELPTVITTPIPILGMALSDRQLPPGGRAQ
DTTVQKWIYYILSQVQRVTPKGRPALVERVTESTINVYPDQTSCSEPSPIKEAPPFSPEMETSADVEVWFTDGSARGRAW
RAAALRIRDGKQVVLQGLGKSAQYAELKAVLGVAVWELVEGPRPVKPIYIYSDSWMVVEGCTKWLPLWNKENFKRRGQDI
WSHEEWKTLWKLAQDELPLHIRHVSAAHGNKAGEGPEAKWNRRVDQLTREEGAETLYVEEENKAASPSLPNSSSHCTPGE
RAAEWLHRQHGHPGHDGTARLAASWGIHVTKKEAQEIVDACITCREVKMRLKPCPTVPLSLREGKVAWQVWQCDFIGPLP
RTSRKRQYVFVAVEVVTGITFARASARATAQDTCAALETLLAVYPPPIELQSDNGPHFRNHLVYDWTAKHSMLWTYHIPY
HPQSNGLVERANGILKCNLRLAAGPALKDWDLHLDRAINWANNRPRPGGSPMQQAFGLGGPREPAVERPRGGDPGKLQAG
DRVVVKHPQGDKWEGTLLAKGMHNTWWVFKSDSSNGSQAPCCLVPTDWICPQMQP
>Transib1_SP#DNA/CMC-Transib 833-1703,2151-3307 from RepBase. [Strongylocentrotus purpuratus]
MWVTSQTSHKKLLKSLSKTIGRFLYRMREKWNKCGRRQEYFMKENEDWLNQTLTFNTEVETFLAQQNSTDTGTETEPTSD
LPGTSQGASNVGRPAKNWDTLSDRSKKRKAHHLLEDREPEELLYAASQGVYKKNSSLKYVLKFAMLTPSRPAKIRKLISE
KKKEPLKFSSEEALSLLVETGMTKQAYQTTRLAAKGKNADIYPPYNEIREAKEKCYPNDISVTEDSGKVPLQSLLDHTAL
RIIQEQKDTITQVIENLEEDEQFNCELVCKWGFDQTAHQATVNTKQKSTAGTLDDSSIFCTTLVPLQLKVKDSILWQNPV
PSSSRFCRPIHLQFKKETTELSQEEYRSVQDEIKKLQPMNVSLDIDYELAADLNRNYNIQINYELHFTMMVDQKVVNALT
ETKSSMRCYVCGATPKQFNDIEKLPSASNEEAYSYGLSPLHKWIRCFEMCIHIAYRITIKKWRVSTENDKAVVAAQKKKI
HDRFKEEMGLKVDEPKQGSGNTNDGNTARRAFQEEDTFADICGLDLNLVHRIHMILVAISCKSSLNPVRFGDYCRRTAEI
YVQLYPWYKMPVSVHVLLLHGSTILACSVLPIGMMSEEAQEARNKDNKVYRRKFARKTSRVDNMSDVFHRLMVTGDVAIS
LLSLKTPRPRTLPREVQEMLKDFRVIQDNDSPDSDS
>RILN7_OS_pol#LINE/L1 2-1353 via tfasty with 58532025_Osa, 6 frameshifts and 3 stopcodons. [Oryza sativa]
WNVRGLNSAEKRLVVREMVVSLGASIICFQESKLNAVTAELISSSCGSQFGGFAVLLADQTRGGILIAWKDGVFEGTVVL
SGRWSVTAxIEMAAGVTGLGFSVYGPQQEDDKFLFLQELFEIHAICAGNWMITGDFNLIASAADKNNSRINKRLMNVFCN
KLNELELRVMYLFGRRYTWSNERREPTLVKLDRVLVSIVWEENFPEANLQALKSSVLRSLPILLTCGIGFQRERGFRFES
FWAKMEGFEEVVKECWQKEVSSSDPFSILYVKMTRLSKCFSKWGQRKVSLHRLQIQITKxVILRLDVAQERRTLIEAERI
LRAALKGRCLALASMERIRLRQRAKVKILSEGQASATFFQLKIMARRRKLIIPRLEHEGNMVTTQEDLQKLATDYFTKNF
SEDQTACSHLNLEGIQLAKADLTSLDEEFTEDEVWKAIKELPLxKSPGPDDF
>MIUSE1_TM_gag#LINE/L1 130-2229 [Triticum monococcum]
MGSDVGSTLGLDFSRGLVFADKVFQPTGFTVHPMDDTGFFTMVISFGRHTFRLHEDSVAAAIEAAIGGSTIEFMVFPLKD
KVFGFQVSCKEVAMIVLKLRSFSCDQFKCYFHLWGNGGPNWGREFKLWKLECDAEWILVSPSKRRAALGMLAMHSKPQKS
SVRSSHGQAKKLSFSTFQSYPACRGYRYPAMQDCIQTIEDAGYTLPEHERVVIHPPPPVVLRWTSTAPAISFGTVGNLPP
YAARPPSISGGNLATLNVDVSPHVGPSSTRATDQVGPVLPPGPSTIPSSQQAEAEFDNLVSGMVDEILTCQKCLRKGHFA
SACTSRSRCNSCLRIGHVARDYHRFAQILGLVWKPKPGNVATSEDPSASTENISLTQLLPNLDSSCTSALTLSPRSISPG
PKTPSSAPPETPPLPESSPPAASSERAPPMANFHLDPMLYVPAGHHVVDGGEARVPRTFVTPHTPIVRRHEEFMLAEVMP
IPPPDQIGAAREEVVQWLQAHGILVRSAQPWIRSVGLFELRDAAVRFSLLQMPPQPLGNDRFVRFMKHDEGESFRGVQGF
RQGLLMFLGIPLDLRNEIGLRAAVNTFGKFHHWISEDPYLVRSLVFASFPEDILVPRDVVFMEYAAWGGARVSWTSPLYI
PGANFAEQMPQDEDWMPINGNPHPQPGVPFPEMPPFVLPPFPALGWNDVPPPPAPAQDQ
>SHALINE7_MT_gag#LINE/L1 (fragment) 152-786 via tfasty with LINE1F_MT_gag, 1 frameshift.  [Medicago truncatula]
MEACKNNLHARIIWPKGTAPLTVVALKEKLKPVWKNLAPWGVTSIGKGYYEFVFSSSEDARRVRSVGSWMLNPGLLKLFP
WSKDFSPNLQTNTSAQVWLKIHGLAQEYWRKRIIFAIASSVGTPICVDAVTSKPAIERTFGHFARVLIDIDLSKELRYEV
LVERKGYAFFVELEYENVPEFCAYCRAVGHHVNVCRAGNRNVHTRKIIKRAS
>SHALINE12_MT_pol#LINE/L1 1483-5480 via tfasty with OSLINE1-2_pol, 2 frameshifts. [Medicago truncatula]
MSQFPHMKKIPTKLPCKSIXTNILTQVIITCFLPLKTILLPITIPCISXKIMVMIKWNPVLDIMTPMRRTWSLXLSTFTV
SSVYLFVMEALLDITILSWNIRGAQNNNARRHLKELMRKYNPTFIAIYETHVPFARLSSFWTNNGYTPVHIIEANGHSGG
IWLLNIQLLTSPQLSLTPNPHSITFTISRGNATTTCTCIYASPNPTMRPNLWNYLMNINHTIDGPWMLIGDFNETLLPSD
QRGGIFHHNRAAIFSNFMNNCNLLDLTTTGGRFTWHRNNNGIRILSKKLDRGIANVDWRISFPEAFVEVLCRLHSDHNPL
LLRFGGLPLARGPRPFRFEAAWIDHNDYANLVKNSWNSQNHNTTAALNKVKENSITFNHEVFGNIFKRKKHIENRLKGIQ
NYLERVDSLRHSLLEKELQQEYNHILFQEEMLWYQKSREKWVKFGDKNTSFFHAQTIIRRKRNRIHRLQLPNGIWSSDSD
TLQEEAQKYFKNFFSGNQHHHDRTFNEGTHPTIDDQGKTSLTKPITKNEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIV
GDDIFQMVHTAFQTGYFDPEISNTLIALIPKIDPPTTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPG
RGTSDNSIVLQEIIHFMRRSKRKKGYVAFKLDLEKAFDNVNWEFLNSCLHDFGFPDITIKLIMHCVTSSTFSILWNGNKL
PPFKPTHGLRQGDPLSPYLFILCMEKLSIAINNAVNQGSWEPIQITNTGPQISHLLFADDVLLFTKAKSSQFHFINDLFD
RFSRASGLKINISKSRAFYSSGTPHGKINNLTSISGIRSTTSLGKYLGFPMLKGRPKRSDFNFIIEKMQTRLASWKNRLL
NRTGRLTLASSVLSSIPTYYMQINWLPQNICDSIDQTTSNFIWKGTNNKGIHLVNWKKVTSPKHIGGLGIRTARDANTCL
LGKLVWDMVQSTNKLWVNLLSNKYTSGPNILHANATSNSSPTWSSIIRAKNVLKNGYFWRAGSGSSSFWFSNWSSHGPLG
SLVPIIDIHDIHLTVKDVFTYNGQHTQALYTNLPQAIADFINNNHINFNETVEDTFIWNHNINGIYTAKSGYSWLLSLTE
PTNAITPHHSWSWIWKLKIPEKFKFFIWLACHNAVPTLSLLHHRNMAPSATCSRCGEDDETFLHCVRDCKFSKIIWQKLG
FSDQDFFSSNCTQDWIKNGATGTHSIIFLAGLWWIWRHRNQMCLSNETWSLTRLCINIHNSVDTIKKSFQHDGAISHSDR
MVRWNNNNYHCHILNVDGSCLGSPIRAGFGGIIRNNAGFFLSGFSGYIPNIN
>SHALINE11_MT_pol#LINE/L1 7-3434 via tfasty with OSLINE1-4_pol, 3 frameshifts and 3 stopcodons (rather large deletion as well)  [Medicago truncatula]
MIVSSFNVRGLGGGLKKNKIKELIRNHGVDFMAIQETKLENVSPELCYNLWGSDNCNWAFLPSEGNSGGILSLWNKSSSK
LIFSFSGEGFVGVCLEWGPLATRCFLVNIYSKCDHCLxKAFMGxLGGVEGGLGDGVWSMMGDFNSVRARDERRGVQEVEP
SYRREMRLFNDFFDKVELEDKNTLGRKFTWFHSNGVAMSRIDRVLVSEDWELVWGSPSLGVLPRDVSDHCPLLLKSGDSx
LGPKPFRFNNYWILNRKLKKVVEENWRDVNSKFFHKSVKLRSNSNSIRALQVDGGWVQTPEEIRGAVVEYFGKQVATTHW
ERPKLDGVAFDMLSEDDNRGLIAPFTLEEIEKVVKDSDGNKSPGPDGFNFAFIKEFWHLIKHEVRIMFDQFHANEVLPRS
FLSYFVTLIPKVNNPFTLKEFRPISLLGCLYKLLAKVLAGSLSKVMNSIISTSQSAFVKGRNLVDRVLVINEVVDFAKRA
NRECLILKVDFEKAYDSVEWSFLEYMLKRVGFCPKWVAWMKACVFGGNMSILVNGTPTATEEICIQRGLKQGDPLAPFLF
LLVAEGFSGLMRNAVNSNSFEGFDFRNNGFVVSHLQYADDTLCIGEASVENLWTLKALLRGFEMVSGLKVNFVKSCLIGV
NVGREFMEAACNFMNCREGSLPFKYLGLPVGANPRSLSTWEPLLDCLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPIFYL
SFLKMPVKVWKKVVRIQREFLWGGVNGGKKVCWVKWSTVCQPRAKGGLGVRDIRLVNFSLLAKWRWRLVQPDQALWKEVL
ICKYGNRIICLLDPGDNVWPSFASRWWLDLMSLEGAVGTNWFNREVVRKVGNGENTRFWLDRWVGNEPLCVTFPRLFSIS
SQKEAMVGEVWVDGVGGGDWNFMWRRNLFVWEEGLFLNLIEELEGWEKVELVDSWWWNWRRKGFLSVTSSYVMLENLLMP
QESLENTKKVVFDLVWKSPAPSKVVAFSWKLLLDRIPTKDNLLKRRILAPEASVRCVFCDQVGETATHLFLHCELAFKVW
SRVGGWLGINFITPQTLFQHFECWNGEIGRRKLRKGYWMIWHAVIWMIWKARNDRIFNNLVKDVGEIVDDIKVISWNWAN
SRLKSPPCLFYEWCWNPKECLLR
>LINE-7_OS_pol#LINE/L1 3416-7009 gi|31044099|dbj|BAC15618.2| unnamed protein product [Oryza sativa]
MNRSFSVLCWNVRGLGDKNKCDIVKNSISDCNPSFVLLQETKLQNIPPEKAKTILPPNLANYDFVGSYGSRGGMLTAWNA
DFTKTSFISRHFSLTISFTSTFTDLSFSLTNIYGPAELDQKQDFLHELLEIDPLIQGPRLLIGDFNLTRSPSDKNSQNFS
TGLAAAFNQTINSLSLFELPLPDRLYTWSNKREVPVLARLDRAFFNNAWNNTLPNTSLSSCTRTTSDHVPLLLTASTSIP
KSKTFRFENHLLLDRDFLPSVMHRWPQQLNMNDPAACLAAKLKQTRSIIKVWMKEHRKRSSLNEDCKFTIDLLDYIEELR
PLNDGERCLRNLVQEKLFQAIQSKVAYWKQRGKVKRLKIGIDNSAFFKAHASKNYRNSRIRSIKHNGAEIADHNGKALLL
HSFFQHFLGSDCQPLWDFDLSTLYSEDERDYNLLASQGLQFSTEEIITSIKGMNSNSAPGPDGFGPSFYNSAWNSIKEDI
IKLAASFCSNSVQLERINRAHIVLIPKPGKENTVDGYRPISLQNCSVKILSKVLANRLQKVLTRMIHLDQTGFLKGRCIS
ENLIYATELIQACHARKCKTLIIKLDFAKAFDSVLWTSLFQILAVRGFPNNWISWIKSLLQTSKSAVLLNGIPGKWINCK
KGLRQGDPLSPYLFILVADVLQRLLEKNFQIRHPIYQDRPCATIQYADDTLVICRAEEDDVLALRSTLLQFSKATGLQIN
FAKSTMISLHIDRSKESSLSELLQCKLESLPMSYLGLPLSLHKLTNNDLQPIVVKVDSFLTGWEASLLSQAERLILVNAV
LSSVPVYAMSAFKLPPKVIEAIDKRRRAFFWTGDDTCSGAKCLVAWDEVCTAKEKGGLGIKSLKTQNEALLLKRLFNLFS
DNSSWTNWIWKEFDGRSLLKSLPLGQHWSVFQKLLPELFKITTVHIGDGSRTSFWHDRWTGNMTLAAQFESLFSHSTDDL
ATVEQILSFGIYDILTPRLSSAAQNDLQELQTILQNFSLTNESDTRLNNRLGNLTTKTIYDLRSPPGFPSPNWKFIWDCR
MPLKIKLFAWLLVRDRLSTKLNLLKKKIVQTATCDICSTTDETADHLSFNCPFAISFWQALHIQPIINETKYLSQLKAPA
TIPTRHFQSFFMLCFWVLWNHRHDVVFRGRPPSIASCLQRGISESSLWAETFTPDDRFVIDVWKGVFSSSLQTLHPM
>LINE1A1_MT_gag#LINE/L1 746-1813  [Medicago truncatula]
MIDGQLVDIKIVEEWGVNVGEDACLFEEEDEQQSQSDIKEVFRDPETSKNFNVAVDEIVKELEAEELHNVSELREEVGAC
VDVVDVNPEDTSDVGPIINLDNGKGATTQSSTVPGVVRKLSDGKDMANFDGESLPEVSVLNLVNQAGVVDSGGVGRGRRS
GSKSVGDRHAISASGPPFDGKSVLSGPWSTEWLKDHHGGVGISFSAKRKFIKVGKRKVQKSQEGVDATKRRKIGGELRHT
VHTLKKVARLSSKDRNAVLRTLKRRASKKKQPSGVEGSQGNSDEVSSFASVNKEWNNWVVLHGKEKEAAEDVWGIGKAFG
LQFQGDIHNMFGALARKGEGKKDSKRSVEGGSGAAK
>LINE1-14_SBi_gag#LINE/L1 407-3136  [Sorghum bicolor]
MISNSGFQLDSGSAALNDDFVLGANSQIPRNSPSEVSVALHQSLTPQDQVQNDSIGLSNSENSLASSADASCQSFTARDF
VRRVRRLGGCTRCLNLSHICFDCDSEVRCAVCFNYGHKSKFCFTKRQTKLCWRPKRPTDLEFTEHGGQPTRDTEGSGAYC
DSPSSWGFIHIDRSARLPGSHSSEPVPLPHSTPLPWLDDQGDEDMANFVVHPAPFVPAGLEVEDWARPARGRIVVSGNPP
RQHDEYAIITVLPRPHQNELYDTMEDVVQYFEHEQNVRAESSCLSPLGLCLVQFRSPVARQAMINLSPLQLDAMHEIVVV
EHDQGLNLRSCPFTRTCWIMFLAFPLDFQTREIISQAVGYFGTIITWTNNARCKSRILLRCKVTHISRIPRSLIVCEGNV
VGDNGSSWTVPIFVLSSQQTDHLAGDEDQIPPNGNPHPENDHFLHEDHQQGNQFPGFFEDIGDLNQVQQANLDHGWEIPP
PPPPNGNMGWGQWVQQNVDLQQDGELVGENELQNVNNLANIAVANAVANGLMQHPEQPQHSSSVSSDTEAFFRAQGAPIT
LELPLPDISSNRSAADRALVATGIRVQGFDNDYQIRAITNNLGLHMNVGPTPSVEMLLAELATMTQRLQSFLPMKNPLPA
DCWNFWPADHSLDTWHLRTDNPRWGNNAEASSSSGYRRPRLHLLREGDFAATGTKLFQDNLSTSNILSRECRDIMLYDQD
YALEQIMRNIHPGRNSTNPANMNRTTEAMGSVLPTLDSQMLEDFIDAGYSAEEVEALKANMESYFTPHPTQSRXFDDTPS
TKKKRKAKAQTPIVDDQARRSARLKKNEEIQHFQLDREPRRKNGEAKKTVYISTVEDLXTAIINRSLDSEMVANEVEPIP
IFTLIDLGVSFCGVPPGELTPNVLQQISEE
>LINE1A1_MT_pol#LINE/L1 1857-5534 via tfasty with LINE-05_OS_pol,  1 stopcodon [Medicago truncatula]
MRIVSWNVRGLGGLEKRREVKELVREKKPFVLCIQETKLEVIDEFICTSLWGPTNHDFSFSPSVGASRGMVTIWDRVEVE
VWSTVRGVHFLLIHGRFLKSNEEFYIFNMYAPCDRRAKQVLWNSLSSRLLSLGSSKVCVCGDFNTVRSVDERRSVRGSQV
VDDCAPFNDFIEDRVLINLPLCGRKFTWYNGDGRSMSTLDRFLLSEEWCMVWPTCLQVAQLRGLSDHCPIVLTVDEKNWG
PRPVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKLKLMKAALKEWHVANTLNLPSKIVSLKNRRAVLDSKGEEE
ELSEEELGELHGISSDIHSLSRLNTSICWQQSRLNWLRDGDANSKFFHSVLAARRRINSLSSILVDGVVVEGVQPVRQAV
FTHSKNHFLAPIMTRPSVGHLQFRKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSFWHEMKAEIVRF
VTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKILANRLRQVIGSVVSEVQSAFVKNRQILDGI
LITNEVVDEARKSKKDLLLFKVDFEKAYDSVDWGYLDEVMGSMTFPTVWxKWIKECVGTATASVLVNGCPTDEFFLERGL
RQGDPLSPFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRALRAGLILLEAMSGL
KVNFHKSSLVGVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLL
KFVLTALPVYALSFFKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRL
LLEKEALWRKVLVARYGVADGGLEDGGRSCSSWWREIVRIRDGIGEGGEGWFGSCVRRRVGDGAETDFWWDCWCGDVSLC
ERFSRLYDLTVNKLISVRNMILLGVDVGGEALRWRRRLWAWEEELVEEFXALLLTVSLQESVTDRWIWLPTQDDGYSVRG
AYDMLTSQEQPHLHQNLELIWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCGNEEDVNHLFLSCATF
SALWPLVQAWLGVVGVDSQSTSDHLVQFINYAGCSRGRCSFFHLIWLLVVSVLWNDRLFRNRQSSLPQMLDKVKSTSLWW
LKACNVVFSFGTHQWWSSPLSCLGID
>LINE-05_OS_gag#LINE/L1 572-2620 [Oryza sativa]
MDHIPGLPNQRPAVGYATVPMTELMQHELERLRYHGALISAEVEGQETSPREVARALTQQVGIPISDLRVTRHHPEDFFV
FFDFPEGQAAAARRGFITLDGGRFTITPWSADRHVHHPNWWFRVRLCLEGLPQYAWNRAGLEGVMGPICLFDRIEHESVQ
RQNTAIFSCWMWMRNPDLLPRTVLSTFFPPGAGRVTSGITPPLPDEIAPPPRGRLPHVIVHLDEMEDWTPGPPCSPSSGV
SGLPSSDLSDSGGPIPTVRTFQWYLGCADGTQPPRRRAAARRGCRAPPQRREDPEDDEDDDGRRRHAEDIPPRRRSLRDV
IIGRGRSVESRAAEGARHRSRTPHPSGRQRAHGDGRQGRSRTRHSSRCSCRCRSRRTRSPSSLTPRGQDGTGDAGGATTK
VVAVSGQADGDQQPVDALVSLPDPLIQILCSSPLLPFSDEQGDHDPMLPLLAEIAPKSSREAENETKRTGGEEPILGEDK
VASAAELGQEKMGHLGPDAQQAPKMDLLAQSTQDDEAQASTGDQPTLVQQADCEEQHQATVQTQPIHGGEGEREKVVLSP
LFSQLQPPIILQAPLELAPPGAAKTKGCGRKVVQMPSRRSGRKARFSSVPVSKRAEVRLMEEMGLLTPGEPVGDAAVEAY
AKSFDTPLPSHVIAGLRVLTRLDGVHDMPVPGEEGTTATAVV
>LINE1E_MT_gag#LINE/L1 9-1286  [Medicago truncatula]
LPFLVRRIPFSPSEKFLYHFVSMTSLPNLHLSDEEEELEIPIEVIPDDTTDTSASLVGRFLTDKPIRGHMMTSKIAEFWH
PGRGVNIKEVEPNLFTFKFFHYRDMHTILKKGPWYFDNNLLILNTLPDDAPAQSVPLQSVPFWVRIHDIPVGFMTERVGK
DLGNFIGEFLEYDVKNGANHLRSYMRIRVLLDVNKPLKRQKNIKRPGGNIQTVKFKYERLGNFCYYCGALGHIEDYCDKL
YSIDSDDGARFWGPELRVDRQKNEGRGSRWLREEGQEWSPPSNSAPKAAGDVSVGPANGNGRALTVVTSPAKTVALADLL
RNPNLIRPSGSNKQQESHLSPHNETLLEEDNATIIHSNTKRSRADLNGGSLSADSSNARPTSLSIPSTPAHNNSQSTPME
VVNTKSSSTSVPFLSAAPGSQACRES
>SHALINE16_MT_pol#LINE/L1 1611-5732  [Medicago truncatula]
MSLVAWNCRGVGSPSAIPDLKYLVRHFNPDLLFLSETLAHRNKIEELRFLLGYDSCFPVDRTGRGGGFALFWRNSLNCXL
VDFSNNHITVEIVDSXLGTWRLTGYYGYPNGGRRTAAWNFLRQLSAQFTGPWCIFGDFNDILDASEKRGRTTRPPWLING
FRQAVLDAGLSDVPXEGYPFTWFKSLGTPRAVEERLDRALANNXWFNMFPNANVETLVAPASDHYPIFVNLAPLPRPHIS
KRHFRYENAWQLEPGFKDLVTNSWQEHSSHTLIPKLSSCAEDMCEWKKNHCNKLKKDIEDCRKQLHDTRLESSGEDQIRM
VELRKRMQRLLSQDDAYWRQRAKTHWYKDGDRNTKFFHASATARKKVNRILSLDDDGGHKITNEHGLQEVARNYFVNIFQ
QNSDFSPVIDVINPSVSDNDNDLLTAPFSKAEFSDAIFSMHPDKCSGPDGYNPGFYQHFWNLCSDDIFKECCGWLDTGQF
PPDLNITNIALIPKGSSQVSMKDWRPIALCNVLYKIISKVLANRLKKVLPKCISDNQSAFVPGRSILDNAMVAIEVLHFM
KTKTRGEDRYVALKLDISKAYDRMDWNYLRAVLNKMGFHNRWIHWMCMCVESVDYSVLVNGEQVGPIIPGRGLRQGDPLS
PYLFIICAEGLSSLIRDAETRGVLTGTKVCRQAPSVSHLLFADDCFLFFKAKEDQAHVMKNILSTYELASGQAISLPKSE
IYCSRNVPDDLKTTITDILGVQVVLGTGKYLGLPSMIGRDRNATFAYIKDRVWQKINSWSGKCLSKAGREVMIKSVLQAI
PSYVMSIFQLPTTLIDSIEKMMNSFWWGHGKTTQRGIHWMNWEKLSAPKIHGGMGFKDLSAFNLAMLGKQGWKFITEPDS
LVSRIFKARYFPSGSYLTANVGHNPSYVWRSIMRARFIVRGGARWSIGSGATIPILNEPWLPNGEFISSDIPGAHFVHNF
TVNSLMNLYDKSWNEQVIRQVFSADIADKILHTPLISQVDEDRIIWKAERHGRYSVRSAYRLCVSELIDSSYLWRPGYWS
GIWNLKVPPKVKNLIWRMCRGCLPTRVRLLDKGVNCPTNCASCDSTHEDLLHVFFDCPFAVQVWNRTGLWSSVHHALSHT
NSATDAIFYLLETLSAELXQRMSSVIWSIWKHRNLRVWEDVTETSAMVVERARNMVADWQLANAPDVLVSTSYPQHAMPT
QMGASTSQHHNQVLWQPPTAGRYKCNIDAAFSSHLNRTGIGICIRDAEGTFVLAKTMTYPCIVSVDVGEALGLHSALQWL
SEMQFDNVDFESDSKLTADAFLSTRNDXSEFGSIISSCRSLYRTFFSNSRVEFVRRQANXVAHALAREATSLASPAVYYD
IPNCIETIIINEML
>L1-3_HM_pol#LINE/L1-Tx1 1187-5040 via tfasty with L1-2_HM_pol, 1 frameshift.   [Hydra magnipapillata]
MEAIKIFSVNICGLADVKKQSRIIQKFRKMNFDFFLLQETHLNSQAAKKFINLWNNPGYYSNGTSHTGGTLILIKNLNYN
LKVIEHFEDPNGHYNYIIVENDYHIFLIINVYATSGSSYTDQIKRKKLFKNISKKIKIKNSNNQFTILGGDFNMVLDDKD
RYPQINRRKCLSTCNLKTLLTTLNIEDTWRILNLNALEYTYKSTNNISFSRLDRLYISKHMRQHKFIEHEPMTFSDHQNA
ICATISINNIDIGKDVWVLNNKNLSKYNYTDNVSKIIKIGCQKIYYSENKTSDWDLLKQEIKLFSQKFSKSEAKKTRVEE
YRIKKQLKNSLKKSHYNPRMKYLSEILKVKLQSFEINKIKGAEIRAKVKWRTDGKKSSKFFFQLEKAKTSKQIITLIKDK
NGNEKTNTREITKCFEQFYKKLYKNTNNDVTLQKFLLNNTDIKKITKQQQRSLDEPIMLYEVENAIKTMKNNKSPGNDGL
TAEFYKSNFNSLGESLVKILNEIIKKNEMSITQKQAIITCLFKKGDKSDISNWRPISLLNTDYKILTKIISNRLTKILPT
IINENQTSSIPHRTVYQNLAYTRDIIYIANKKNLDASIISIDQIKAFDRVDRNFLYDCLSKFGFSVYFINLIKTLYYDIS
SNLKINGFLSDKINIYRGVRQGCPLSMILYIIQAEVFAGYIRKNPDIKGITLDNKETKLQQYADDTQFYLSSDNSIKALG
NAINIYKLATGTKLNTAKCQGLWLGKNRSIIKENFLNFSWHDTTLRSLGIIFSNCSQHTNHQWDEGIAKINKKIENWKRF
HLSIKGKAIIINQILLSSLWHLAFTLPIPGDQKIKQIEQEIERFLWNNSTIKTPKQISKLPVDKGGLNIIDVKEKLQSIQ
LSWISKNFNENEKGAWKDSAFYIFNNYRDANQGNLIFFTTHSTESLKTLPLYYHQTIKKWSRLYRKTNNHTNLTIEEILK
QPIFYNPYIRHRNKTLKPTQESKNNDVIKLGDIAKVFIPGFLVNQLIGIKQLLLTKIINSLPPQWKQLINTQSQMFDHNK
SLTYIHLKNKPPLCIIDLNSKTIYTISKNYKTTNIPEKYFRWQNHFKSMKNTAAKEWSQLFCSIHKNNTNNKADEIRYKL
IHFALPTNLKIEDTxKNDLCPQCKKKKEDLPHMMYKCKKVQPLIKYTFALIRKIYPNHPPLKNIFKSFLFALSPSVNSFY
IGKIILNELLYKLYCNRMRSFHKKSMFARVTLLEEFQNKIKKILFQEFEISKLTNKKDFFLLELAQIWSNENKINIKMNN
NLFLN
>KenoDr1_gag#LINE/L1-Tx1 gi|34392577|dbj|BAC82620.1| gag-like protein [Danio rerio]
MSAAXAGVRRHHRRRFLLKAPNGKLLEMSRMDFSRKVRQNPLNFRLEDLNCIVTLPLGKGFDVSFRAASLLNDFWQRFDA
VKIQFSMFTVEKLSDNTLKTVIVRMFNHTVPGDDICVWLGRYCTVRPQPVKVLDEDGIWNCSWRIPIKQWEDAGGYQGLR
HLPSMIVLGENRGYIHYQGMPKLCRKCGKNGHLAEACQELICGKCREVGHSFEQCTNGRRCNLCGEENHLFRDCPKSFAN
KLKNNKMAAPQASMVEQREEAVPVVLAGHSLPATGTGQEEENGAAIGAESPILFEQREEAPPQQSVTQNVTANEEEETAS
SLLTVSEASVDASQSETQCSLPYAQMQKRAARSPLEMEEKRLRASERLDSSKSEDLDRSWPLGSPNGVSFLHVKLRSSSP
KELQEVFSVASEVVSISSPDPTPVGIGKEQMQQDIT
>L1-4_SMo_pol#LINE/L1-Tx1 3875-8332  [Selaginella moellendorffii]
MTDLSVLSWNVGGISKDGVLWNDKKARLRQYLRQLEGVIGKCDFFCFQEHRMQEHQTIFKFSQGEHFWNPAVGRRGGTLI
IAKGPWQSLGTSHQILIPGRAHMIVIKVNARTIGLLNIYAPASRSTSRAHFFRVLQRRLPTGIDDWILAGDFNFVDHEED
KQGGIIQDRRTRAERLAWNSFLLQIGTCDAYEIPGFVTHEPRFTWRERQRRGIQRRLDRFYLTMDLCMQGGKLDIDNTYT
DFSDHHPIRLTLPFRRSRGPRKPVAIPKKFFEEQANNNRAHEQWEKHKGNLHSFTLQIAQEARAKIRKDRRGVFNTVQKV
RSVLASINTDLRSNPDDPWLQAQKIQVKRQLERIEADKMEAFLKAGHIRWHASELALNREFYRSIRSKVVSPPMFGLKDE
QGQLHTEIDDMHNMAEHYYSQLFKEEPWDEVRQEKLERVLEHIPTKYTPAMNTRVMRPFTLRELKDALDDLKDDKMPGED
GMPPAFYKQNWDWIGPEVLKMWQETMRAGKWPEGATDGIIALIPKKGDMSHLKNWRPISMLNTMYKIVAKALASRLKPLL
PETIKETQNGFVDGRQIVDNLLTVLLAQEHTKDMAEQIAIILLDFEKAYDRVDWKVLQAIMIKQGVPLQFVEWTASLYHS
ASSRVTINGTMGQSFKLERSVRQGCPLAPYLFLFVADALAYYLARPQGPKGMPLPGCGAALQDMNEASKEDLLSSAFADD
TSLIVEGSPENLSNVKRDLDFFNEAMGSKINWHKSVGLWLPPGRPPTWGTELGFKWLDTEETTRYLGFQVGRQYDPEPQN
QKAVTKLRDQLKFWASRKLSFSARCVVANSILLGAIWFLAACWNMDRRTIQEMNQLIRTYVWKGSSCVSRGGAKVNWRSV
TLPKHEGGLNIIDIEEQCKALLFKIFTRMLMPGHQPWRILLRAQFLKVLPDRNEHTRQNWAPDEQWLFSDTKLKMTKAHT
FSGKLFKLWRQFKCKLERKPPRTKEQLDRQPIFLSKLFAVXGKTLGASEDRGLDQTCRDLHRAGMRTFAEADTMIQPNQT
AHNRDRISAFYGLTISEHRMRKFQTAFLAAKHACLERLNLQEDQHHRWWKVDESIVCTLPNMASGLVFEAGQAGRLYPIV
TPEYEDLPDMSRAKPIRVIQMEKKTANVDPLIPENQYARLYWFRQQTLDELKWDPAEWHWRGTTCKDFFQYETKLGRKLI
RVPTRSSLIRKAKAQQIRSRNHSHCINKIWKGRWSAKNRYFMWLAQQERLPSLVAIHLPNTACKTCGATETQRHILWECP
AAQEVWEGAAAVLKRTSTGGAAITYESALWGSFIQGKTKNPDAWKWRHNEAPHFDQLNQTRTHITHLHQELFDALRGCTL
AEIWKARCARLFEDTDPSARATISKVWSRLIVSLAARLDTLIKRGEEGKIAKEKKLWPFFRGRSEAGEEEWTWKPPIWIW
QHMFRNEGTCTSPSRQSSTPGTSEAWXSDITGSSTSSTLSPSSHPP
>L1-N3_CQ_gag#LINE/L1-Tx1 157-1224  [Culex quinquefasciatus]
MSQVQTRENTFKVLLSNFPKRPTFEELHKFVHVNLALRPEQVKRLQINHAQNCAHVKCSELKIAQDIVAMHNEKHELVIN
KTKVKVRLMMEDGGVEVKIHDLSENVTDDEIVAFLRHYGDVLSIQETVWGEKFAFRGVSSGIRIAKMVLRRHIKSFVTIR
NELTLVTYTGQPATCRHCTLTQHIGMSCVENKKLLGQKAXLSERLKSAQTTAPQSYAGVVNEGTSTTVLQTQTAPPQTNP
IDCISISGTDTATILPNHSTXVTNELSGIGTGDDNEHQIENSRNEESNDEEMPVSLTPANMILENNFKVPFPIRDPKTSP
SLDTISESESDISPGGSAPNSGRRGPGRPKKKKTRH
>L1-15_DR_gag#LINE/L1-Tx1 210-1469 [Danio rerio]
MASSGDAVCESLTRRHGIKIMCKASVEDCILAVGEVVGCSSVVSASRMNNAVVLFLNTIEKTNEIVQKGVVINDELIPVL
PLSSPSRKIIVSNIPPFVSDACIAKELSSFGKLVSPIRKIALGCKSPMLKHVMSFRRQVYMILKDNNDELNLSFNVKVDG
FNYTIYATSESIMKCFGCGKIGHLIRSCTSGGETGQGDVQGESSAAASVAVDAAAPAADAAVSEERGGGGAVAPTMAEVV
AGSSAVQTSINSKDDTSSQKATFSTAGTAKESTGEGIVEMEIEPEQIFKVPNKRKKVSENKMIKQAKKDKSKADYIISDN
DADSSDSSSSVYSFSSQNESESQTQRYTAEGIKKFLRETKFLPNVEAEDYFEDVSAFVKDVKILTREGAFIDTEVYRLRK
LVGKVKKKNLLNDEKPDLV
>IseAg1_pol#LINE/L1-Tx1 1593-4823 gi|34392589|dbj|BAC82628.1| pol-like protein [Anopheles genus]
MDTVTNNIRTIVNGSCNIASININTISSATKLEALKTFIRTMDLDVIFLQEVYHTDLALPGYNVLSNVDASRRGTAIALR
DHLKFSHVERSLDSRLICVRLENIATLCNVYAPSGSQRGAEREEFFNRTVAFYLRNACPHVILAGDFNCVLKSKDVTGGG
NFSLALRNAVNSMGMSDSWEALRGNSVEFSYITSGSGSRIDRCYVSSSLETQLRTTDMHVLSFSDHKALTVRLCLPTPPN
RLTNNGYWQLRPHVLTERNLEEFRCKWNNWTKQRRNYGTWISWWVEFAKPKIKSFFRWKTNERFRSFHLHHELLYRGLKS
SYERYLSDPNELTNINRIKGKMLLLQRRFSEDFKRINETRVCGENISTFQLEERRRRRTVIEKLNIEDGTSLTDKDAINV
HIRSFFSELYTTDNTDNTQTDDTFTCTRVIPEDCEINNGCMEEITSGEILYAIKNSQSRKSPGPDGIPKEFYLRAFDVIE
RELGLVLNEALRGEIPRSFVDGVIVLVRKKGGGDAMSSIRPISLLNTDYKLLSKVIKPRLDCIIGKWGIISTAQKCCNKP
CNIFQAVLSVKERVVDLKMKRKCGKLVSFDLSQAFDRVDRGFLFNNMVSMGFNPGLVGLLRRFGDQSSSRILVNGSLSPP
ISIRRSVRQGDPLSMHLFILYLHPLITRLEGICCDQDDLVNAYADDISVVTTSSQKIELVREAFEAFGRVSGARLNVDKT
IALDVGYTTSNAIQVPWLRTVERLRLLGILFTNNVREAMSLNWDLLIHHFRQLVWLHRVRDLNVVQKVVPLNTFLLPKLW
FVASVCGARAMDIAKVTCTVNTFLWDGSGGFRVPLQQLALPRNRGGLNLHLPAIMAKALLTNRYVTEQDCLRVGGQHISC
AGNPPNIAAVSSTYPCLRIVIQQLGYQPPSATITTRWIRQTMTEVLLEPKVSLENPSVNWRLLWRNIHRSCLSSLQRSTL
FLLVNGKISHGELLHRMNRVPSPSCSFCSAIDTLEHKFAGCRRVADAWQILHQRISVVISGCPSSSTLLFGLLRLPVLNG
INAGKRSHILSLFANYVIHIIGNNDAVIDIEVLRCSL
>SWIMMER1_pol#LINE/L1 1589-5362 [Oryzias latipes]
MYDRNVKLLTLNINGLHNPVKRWKTLSKLKQDKAEIVFLQETHLPEAEHLKLNKMGFKHVFYSSHSSGRRRGGATLIAGA
VNYQHVSEYKDKEGRYIMITGKINSILITLLNVYVPPGSDWSFYRHIFEIISTKSQGTLICGGDFNIVLNNSLDSSNGKG
DYRKIGKKMRHLMEEMGIVDVWRENNPTKREYTHYSHPHNAYSRLDYIFMFKNDLLRVKNSDIGICAISDHNPVTVSLYL
AGQKRTTVWRLNNNILNYPNIKDKLSYEIKEYLIHNDNGEVSPGTLWDALKAVLRGKIISISSYQKKASQQKLKCLEEKL
LKLQQEHFQSVNTKNKTEIIKLKKEIDDINTLAVQKKLVLMKQKYYEVGSKSLKLLSYKLRKQQAERAIYKIKNPSSKKI
ETDQEKIQQCFHEYYKNLYSETNLNNSDQIDAFLKDLDLPTLTVEQNEKLLTAITEEEIQFAIRKLKSGKMAGADGFSPE
WYKTMETHLIPTLLKTFNWVMEKKTTPLSWNKAIISIIPKEGKDRLDCANYRPVSVLNIDYKLFTSIISRRLETILPMLI
HKDQTGFIKQRQTQDSIRKVLHIIHQVVQQKQETLVISLDAEKAFDSVRWTFLYKVLGKFGFCKSIIETISGLYNKPTAR
IKINGDFTETITLERGTRQGCNMSALLFALYIEPLGQWIRQRADIKGVKVSGKEQKLSLFADDLLLTISQPTKTLPIIMD
SLKDFGTLSGYKINVNKTQVLTLNYSPPQNIKDEYKWEWQADSIKYLGIALHKDFTKMFEVNYGPLNTKLQSDLQRWNAI
PFLDLHSRIDSIRMNILPRMLYLFQCLPFPIPQKQFVEWDKMLSRYIWRGKKPRIKYKTLQLKTDQGGRNLPCLQDYFCA
AQLRPLICMCSPVYTAGWKDLELKTFEKIPLKALLADLKLQGELLLQDDPLLSMMIKTWNDTVKKCNLMEDSKILRWCTC
DSEFTPNKYDGRFKLWIAKGLTDFNSFVHKGAFQTFDTLKKKHGLISDDFFRYLQVRHYFNQKIKISTDDPKFLKTFKTL
IKAICPTKIISKLYNSILSHKGENTYYVKERWEREGRLTITEEDWEQICRKQWITTGSNIWREFCWKSIMRFFTTPSQKK
YLGNSKCWRCGNNGANHFHIFWDCVIIKKYWSDIHEHLQNVFSIVFPLSFESLFLSKIDGLDNKNKKLLYILLAASKKAI
TRKWLKPEQPTTEDWIDVVQRIYIMERISHSLQIRLDVFYATWSIWTEYVKPVRSDFI
>SHALINE18_MT_pol#LINE/L1 340-3553 via tfasty with OSLINE1_1, 5 frameshifts and 2 stopcodons [Medicago truncatula]
IRKEIEKCRKKLERVRTQVCSSNINYFNTLRQRLDKLLVKDDVFWKQRAKTHWYRDGDLNTKFFHAAATSRRTVNKITHL
EDANDVKCTSVDGMKNIAKDYFLDLFQHQDGDRVRVINAVPTSISTEDNDMLTRPFSVDEFKEAAFSMKADKCPGPDGFN
PGFFQNFWNTCGKEIFEAACYWLDNGAFPPYLNSTNITLIPKGDTQTSMKDWRPIALCNVLYKIVAKVLANRLKVVLDKC
ISENQSAFVPGRSILDNAMAAIEIVHYMQCKTKGKEGDVALKLDISKAYDRIDWDYLRSIMVKMGFSSKWSNWIMMCVET
VDYSVLVNGEKVGPIIPGRGLRQGDPLSPYLFIICAEGLSSLIRKAEGSGNISGAKICKNAPIISHLLFADDCFLFFRAK
SGQAQGMKNILAIYENASGQAINFQKSEIFCSRNVPDDAVKASIATNLWVQQVLGTGKYLGLPSMIGRSHTSTFKFIKDR
VWKKINSWSSKCLSQAGREILIKSVLQSIPSYIMSIFAIPKSIIVEIEKMLNSFWWGHNKRNTKGIHWMSWERLSIQKKE
GGMGFKNLRAFNEAMLGKPGWKLVSSPHNIVTRLFKAKYFPKCDFLDSKIGHNPSYVWRSIWGAKRVVREGYKWSIGSGT
DISVWDQRWLVDGGVLQKPESVPEEFKELTVADLFIPQTQFWNVGLLRNLVSNEDTNRILNTPIFEHxSVHDKRVWKLET
NGIYSVKSAYRISLSQHVDLSTHRCDGNWELIWNLKVPPKVKNFLWRACRNCLPTRVRLQDRGVNCTKTCALCENEDEDS
MHLFFYCTKSRQCWQQLGLWSTVQQKAQLLISALRSLMFEILQELDSSQRVIWACVMWSIWKQRNNSIWRNEVMTTAAVR
DRGLNLLTGWQNAQNSRNHSECTATTYxRPVWRKPDEGRFKCNVDAAFFKESNRVGIGICIRDDNGSLVLAKTDWLTPLL
DVHMGEAIGLLYASRWVKELNLDNMDFELDSKRVVDSFHSTRNDVSDLGAIIKDCRTTFSSFFTNSKVEFIRRQANEVAH
SLARAATFYASFHYFTVLPDCIQDILINEMR
>VLINE8_VV_pol#LINE/L1 1931-5575 [Vitis vinifera]
MKLKIISWNVRGANDSSKRKIIKNYIRSQRVDLMCIQETKIQEMSEGIVRSLGTGRFIDWRALNAEGAAGGILICWDKRV
LDILDWEEGHFTLSCRFKTIENGATWVFTGVYGPFTKVEREGMWEEFGAIRGLWDDPWCLGGDFNITLFQQERSSQRRIS
SAMRRFAETVDDLELVDLPLQGGEFTWNGGLNNQAWARLDRFLVSPSWLDXFSGVTQIRLSRPISDHFPIVLEGGGXRRG
PTPFRFENMWLKVEGFQDVVRTWWQGIXVRGSASYRLAVKMKEIKKKLKVWNKEVFGRLETNKASALEQVDFWDRVESER
NLTVEEAXLKKEAKDSFKKWVLLEEAHWRQHSREIWLREGDRNTGFFHRMASAHRRNNAMGRIKVNGEWLVEEQEVREGV
VNSFQQXLSEDMVWQADIGNIQVGCISQQEAESLEVPFAEIEIHSALMEMNGDKAPGPDGFTVAFWQNAWDFTKEEIMEM
FKEFHEHNSFVRSLNNTFLVLIPKKSGAEDLGDFRPISLLGGLYKLLAKVLANRLKKVIGKVVSIAQNAFVMGRQILDAS
LIANEVIDSWQKRKEKGLICKLDIEKAYDSINWNFLMKVLQKMGFGTKWVGWMWSCVSSAKFSILVNGVPAGFFPSTRGL
RQGDPLSPYLFVMGMEILDVLIRRAVEGGYLSGCNIRGGSRTSLNISHLFFADDTIVFCEASKXQVSHLSWILFWFEAAS
GLRINLAKSEIIPVGEVEEILEXAAELGCRVGSLPSXYLGLPLGVPNRASSMWDGVEERVRRRLALWKRQYISKGGRITL
IKSALASMPIYQMSIFRMPKSVAKRVEKTQRDFLWGGGNLEGKVHLVKWDVVCTEKRNGGLGLRRIATLNRALLGKWIWR
FACEKDNLWKQVISTKYGQEDYGWRAKKASGAAGVGVWKEIMKESEWCWENLAFLVGKGSKIKFWKDSWCTDTPLSQCFN
HLFVLAAHRDATIEEMWDQHSGQGDWNLVFVRDFNDWELDMVGDLLRTLRGHRPSLEDDSVXWRQGRNGLFRVKEAYRLL
DKPNATVFPARRIWVDRVPTKVCFFAWEATWGKVLTLDRLQIRGVQLPNCCFLCGCEEENVNHILLHCIVTRALWDIIFG
LIDIKWVLPETVKEALISWRGSFVGKKRKKIWKSIPLCIFWTVWKERNRLAFRGGAVNIQRLKNSFVCNLWNWAKVYLGE
ESFSLIGFLEWIAST
>Zepp_gag#LINE/L1   gi|7484427|pir||T00077 gag-like protein - Chlorella vulgaris retrotransposon Zepp [Chlorella vulgaris]
MQTVKSWQLEPQRALDAHALSTPRPRLLRPRPDRWGDSEPLLLAALGQLELQEEVPYGSPERMQLELKVTRGVIAHFAPH
VGGVKQRGSPGAADSCVELWFDTVPAAAAARHAAAEDQLVRLRAVPGSGDVAVPVQLTAGRFHCQHTCIIIHGLPYEYCR
KGLTQTLLDCAGCPRDTYVVRGEFLGDLPGPLAVGTHGVGNGNACLAYIQTPDEDRHLGRLPKRFFIDGDTRINITRPGQ
LRQPSQPSSFQSQRLAPEPSRRSGPRPIRQRQRRCAGPHAHAAAAQRTQPAPSAQLQQLEARVQASRAPGGDRSGLGASG
SISVARLGPRFRPAGDTQPLTPMDCTPPRSAQVFPAARQALTDMEEDTPPPPPPPVPMEWETQAYSVPQRELRRRISRVR
IKGAATPMDWDLPHTEDPPQTAHRRPPHLDLSGVPVERIEECLEWLAGHTHFSPADSAAAIRRLHSDAPLALVSGGDAPA
DRELRHQLLCDALRRIHGADSLPDDSYGLPALTPEDLAQPAEVPAAPIARQQGRPTVPPGFESRAAAARAAQRAAQVALA
GLPAPWRSARTRHQPTEWWLQQQGQQQERQRVEHRISRSIRSGGPPARRPSQP
>X9_LINE_gag#LINE/L1 54-949  [Amniota]
MPKNKPGSAKDSAFCSQASASRETGLSAFGFTPSGGTDLTYQTMSDLLSKNSADISKRLDAIQATMAATDKKFESFGSRL
QEAERKIEDTEITIDGHDAILTENTKDCKALRNRIDDLENKLRLRNVRLVGVPEGAETREAEIFFSQWIMKVLGMDNFEL
PLQCVVARRIPGKANQATPRTVLAECAALGTRNNVLKLARKSESSFQGSRILFYPDYSPVLLRRRKAFVTVKTRMKNMGL
EYALLYPARLRVRCGGQTYVFLSPTDATAFLDKKEADCARTVEEMASEDSDTXSVFFXX
>L1_AC_11_gag#LINE/L1 1417-2514  [Anolis carolinensis]
MAYKLRDRDNKEPKLQQKRSSISEEPSIRDMTDSILKELQRMQEKQDAYQKLAQEQMLDFKKEIKEELRTMKQEIGTINQ
ELKDLKQEKAEIRNSQDKLRKEVQQLDSETGKIKSRQEQFEAKELEYQLRFRNVWEEGKENIRRIIIEIIANILNCSTDE
AEDRTDRIYRINTNYAKKNKTPRDVIVNFTKKIYRDEILKINNMKLISFKGEKIVILKEYPTETLNRRRKYQFLADELKK
HKIRFRWEKTEGLMTTYKGEKYWITSEAKAKNFYKKLKKELEEEEKSEEEEYSKNFRPCTEIFKKKTDDQYFPEHRTNVK
KDQTTQEEEEEEGRTEEEDLEEEDNHITLSEKEEETMEGGKREEIL
>L1_AC_8_pol#LINE/L1 2297-6047 via tfasty with L1-26_ACar_pol, 1 frameshift. [Anolis carolinensis]
MDGIIRQIKCYTNNVNGWNSPCKRKMIMRQIMKGKYDIISIQETHISQRHGAHLVNKSLGNEFYASDIKKKRGVVTYVNN
NIPAELRFKDTEGRAVGVEITIDNQKILICNIYAPNGPKTKFVKYLREQILNTHLENVIILGDFNGVIDPKMDKSINKRR
SKDTQSTLPKNFISLKEEFDLLDVWRLRNPNVKDYTFFSCRHAVWSRIDMIWATRTLFTKMDKIFILPRDKSDHCAIEMT
INQKRIPPNWRFDDNLMRKAEDIQRYKILSKEYFKFNDSPEIKDATLWDTYKAVIRGHLIQQKARMKKEKTKKLDELNLE
IGKKEIILKKSPNNNKVSKELKILIKEKYRLELEETAKQLRFIKQNNFENANKPGAWLMRKIRKKRQNQQITQIKKEDKI
ITKDDEILQEFEKFYSQLYKEETIDLTKIVQYLGNQKLEKITEEQRGILNKEISEKEVKNAIRSLKLNKAPGPDGFTAGF
YKTMQEEIAAYLKRVMNKVLQNKELPDTWRDAEIIVIPKEDQDTTNVRNYRPISLLNLDYKIFTCILANRFKELLLNWVG
QDQTGFLPGRKMSENVRCILDIIEYYEWNHQKELALLSIDAEKAFDNLNWSFFKLLFKEIDIGFQFYNAIDTIYEDQRAK
IRINGQHSQNIKIGKGVRQGCPLSPLIFIFALEVLLKNLKKDQKLKGTKIGTHEFKIRAFADDIICIIEDPRSKLQLWLS
KIQDYGEVAGFYINKKKSKILTKNITKTNQEIIQNLTGISVSKKIKYLGIWLTAKNAHLLENNYNVKWKEIKKDLQKWQH
LNISLLGRIATIKMNILPKILYLFQTLPIIRTIKTFTDWNKDLSKFIWNGKKPRIKYASMTDKKVRGGFGLPNFRLYFEA
CALSWIKDWCNLKREHILNLEGFDLRRGWHAYIWYDKKQIEKNFGNHFIRSALIKVWEKYKRFMYVRTPLWISPLEENSR
KILGWPEWPTYKEILHKRDDSYQIKPLEQIKKKYKNLTWLQYAQIKQKFAVDNEIGFTTNENFWDKILQNDKKEITKIYE
RLLDWTNATDVVKNCMLKWAKNIGRSINMEEWEVLWKKKQKYTYAWDLKENWLKSFHRWYITPKKLGEMYKETQNTCWKC
KTHIGSYFHCWWSCLETGKYWKMIHVESQKILKKTFPLKPEYYLLGLTDSETNFNLNEDKIFTYISTAARIIFAKYWKQQ
GVPTKDEWIGKIDDIRDMDELTFLLRSYRAQSSNKTDWKLFRDYMATNIT
>L1_AC_11_pol#LINE/L1 2514-6281  [Anolis carolinensis]
MRRHLKIYCCNVNGLNSPQKRNKIYNPLKKSDYDIISFQETHIRRDQAELLSQPKLGKEFYSSDIQKKRGVVTYVSPKLE
AQQSFKDTEGRILGIIINTENLRILVINIYAPNEPKSKFVKKLKELIQDKEFDKIILMGDFNGVMNCEIDRNPGRNSRDK
KFKGLLSKDFRNFKEEYDLDDVWRTHHGEEKDYTFYSAKNKSWSRIDMVWTSKSLSPLVQNIKILPRTDTDHNPIEVILN
KKEKHWRWKLDSNLLKRKEDIEKNRALLEEFFKINDNQETPLHMVWDASKATMRGYLIEQGIWKKREKQKQIKIIMEEIA
KIEKELKRKPRDSNLLLRLEMTQKKREYFELEERAKQMNYIKQTHFESANKPGRWLSRKLRKRKEATYIKRIKTGGKYHY
LEEDILKQFAQYYKLLYGKDPIEKEKITGYLGKLKLQKITEKEREDLNKEISKKEIQAAIRKLDSSKSPGPDGLTAIYYK
VFEGELTPYLLKIMNEIREKGKMPNSWKEALITVIHKENSDPEDIKNYRPISLLNVDYKIFSNIIAERLKIFLKKWIKEE
QSGFLPNRNIKDNIRLVVDLLEYYESQNQQEILLLAVDAEKAFDRVNWDYFKLLIQELDMGYHLQNSIEAIYQRQKAKIM
VNGKVTEELEIGKGTRQGCPLSPLIFIMTLETLLINIRSNEELQGTTIQGVQYKIQAYADDIICFIGDPAKKGEKWISII
KEYGEVAGLMINMNKTKALAKNINKAKQKLISEKLGIEITPKIKYLGIYISSKNSQLLKNNYEKTWKNIKMDLENWNNLK
ISLMGRISAVKMSILPKMLFLFQCLPILRSQKIFTTWNKDLSRFIWQGKKPRIKRINLIDDKRRGGFAMPDLKTYYEACN
LIWIKDWIQLENKRILTVEGFDLRVGWHSYLWYDKIKIEKNFGNHFIRSTLIKTWDKYKLRMYNKTPIWISPIEAVQRRL
LGWSQWPNYETLIKLHGSELRLKSQEELKAENLNITWLQYGQLKEYYKKDKVKGFMGKNNLWDRILFTTGRLISKIYRIL
LEWNTEIEHVKNNMSKWAKDIGRPIQMEEWEACWGRKLKYTYAYQLKENWMKMFYRWYLTPKKLGIINKTKNGKCWKCGV
KEGTFIHTWWECKKAREYWSKIHEIIQKMMNTKIRKTPELYLLGIFNEPRNPNEEKLMIYLTTSARLTYARYWRQETIPK
NEEWLIKVVEIKNMDRLTYLMARNQGRSRKETDWRGIEKYLEANLTTKKSSKQTNN
>L1_AC_14_gag#LINE/L1 1466-2548  [Anolis carolinensis]
MAYRLRSERDTKEPKSMQKRASFSEEPQVKEMTEMILKELYRMQEKQDAYQKLAQDQMAEFKKEIKSELKGMKQEIGSLS
QELKELKNDKEELRNSHGKLQREVQILEQKYNKIEAKQELAEAKDLEYQLRLRNVWEEPRENIRMVVSEILANLLQSTKE
EIEDRVDRIYRINTNYAKRNKTSRDVIVNFTKKIYRDEILKLSNENTISFKEKRVIILKEFPMDTINRRRKYLFLVDELK
RYNLRFRWEKEGLMTTYRGEKHWITSEGKAQNFYKKIRREMEEEEERDHAERMRKKKSGRKKYTTPQGREEADRKQQTRE
DQLREDNKTEEEGGSEEEAEEGSINPSEEERDHEDKEEDQA
>L1_AC_12_gag#LINE/L1 1369-2445  [Anolis carolinensis]
MAYKLRSEKEIKDLRVTQKRASFSEESQVKEMTEMILKELHRMQEKQDAYQKLAQEQMLDFKKEIKNELKGMKQEIGSIS
QELKELKSDKAELRKSHEKLQREVQILEGKTNKIETKQELMEMKEMEYQLRLRNIYEESRENIRSVVVEIMANLTQCPIE
EIENRIDRVYRINTNYAKRNKTPRDVIVNFTKKIYRDEILKLNNENYVKFKEKKVVILREFPLDTINRRRKYFFLVEELK
RHNIRFRWEKTEGLMTTYKGEKYWITTEEKAQHFYKRIKKEMEEEEETDQDDRTMRGKPGRKNYNKKRQEIDGKKQLRNE
QPIGEDKSEEEGEVEEVTDENSINPSEEEGKDLNEKEEE
>L1_AC_7_pol#LINE/L1 2289-6029 via tfasty with L1-26_ACar_pol, 2 frameshifts and 1 stopcodon. [Anolis carolinensis]
MDEIIRQIKCYTNNVNGWNSPCKRKMIMRQIRKGKYDIISIQETHISQRHGAHLVNKSLGNEFYSSDIKKRGVVTYVNNN
IPAELRFKDTEGRAVGVEITIDNQKILICNIYAPNGPKTKFVKYLREQILNTHLENVIILGDFNGVLDPKMDKSINKRRS
KDTQSTLPKNFILLKEEFDLLDVWRLRNPNVKDYTFFSCRHAVWSRIDMIWATRTLFTKMDKIFILPRDKSDHCAIEMII
NQKRTPPNWRFDDNLMRKAEDIQRYKILSKEYFEFNDSPEIKDATLWDTYKAVIRGHLIQQKARMKKEKTKKLDELNLEI
GKKEIILKKSPNNSEASKELKTLKKEKYRLELEETAKQLRFIKQYNFENAKKLGAWLMRKIRKKRQNQQIIQIKKEDKII
TKDDEILQEFEEFYSQLYKEETIDLTKIVQYLGNQKLEKITEDQRGILNKEISENEVKNAIRSLKLNKAPGPFTAGFYKT
MQEEIVVYLKRVMNKVLQNKEFPDTWRDAEIIVIPKEDQDTTNVRNYRPISLLNLDYKIFTCILANRFKEFLLNWVGQDQ
TGFLPGRKMSENVRCILDIIEYYEWNHQKELALLSIDAEKAFDNLNWSFFKLLFKEIDIGFQFYNAIDTIYEDxRAKIRI
NGQHSQNIKIGKGVRQGCPLSPLIFIFALEVLLKNLKKDQRLKGTKIGTHEFKVRAFADDIICIIEDPRSKLQLWLSKIQ
DYGEVAGFHINKKKSKILTKNISKTNQEIIQNMTGISVTKKIKYLGIWLMAKNAYLLENNYNVKWKEIKKDLQKWQHLNI
SLLGRIATIKMNILPKILYLFQTLPIIRTIKTFTDWNKDLSKFIWNGKKPRIKYATMTDKKDRGGFGLPNFRLYFEACAL
SWIKDRCNLKREYILNLEGFDLRRGWHAYIWYDKKQIEKNFGNHFIRSALIKVWEKYKRFMYVRTPLWISPLEENSRKLL
GWPEWPTYKEILYKRDDSYQIKPLEQIKKKYKNLTWLQYAQIKQIFLVDNEIGFTTNENFWDKILQNDKKEITKIYDRLL
DWTNATDEVKNCMLKWAKNIGRSISMEEWEVLWKKKQKYTYAWDLKENWLKSFHRWYITPKKLGEMYKETQNTCWKCKTH
IGSYFHTWWSCSETRKYWKMIHLESQKILKKTFPLKPEYYLLGLTDLETNFNLNEDKIFTYISTAARIIFAKYWKLQGVP
TKDEWLGKVDDIRDMDELTFLLRSYRVQSTNKTDWNLFRDNMATNIT
>L1-62_XT_gag#LINE/L1 146-1141  [Xenopus (silurana) tropicalis]
MATSKSRSQREAGNFFKRQQQDTQKAQDGDESPPHTSREDHSTCLTKSDLDNSLDKLLQKITNTFQAELKSAITNITKEI
TSLGTRTDLLESKHDDFTTAHNSLQQQVASLERSVHALSEHTEDLENRSRRNNIRIRNVPESYTDLRKLLDLLFTKLLPE
YATELLLIDRVHRSLRPKPQHGEPPRDVVVRLHYFETKEDLLRSARTHEAVEIDGESIQMYQDLSPITLQKRRDLRPITS
SLTKAGYKYRWGFPFRLTVVKNGVIHTLTDPTDGEAFLAKMGLPDSPPPPKLAKTTTTPLQPIWEKVATKRTATNKTSQQ
QGSPKHRSQTPG
>L1-44_XT_gag#LINE/L1 152-1150  [Xenopus (silurana) tropicalis]
MAHKRRKREKKGPNSTPSRTTRSVAAYLTRPQASESPPMASQADSWLETDSQPLLSTSEPQAPVEESALLEKFKTMLQQE
LASTAAAITADIAKQLQDLGQRTDAIEHKVDDITTVLDAHENDILDLQTQLREIWDKIEDADNRSRRNNLRIRGIPETVT
DLPAAVESVLTSLLPNLPPERLECDRIHRALRPVREGDPPRDIILRLHYHQTQVATLQAARQKDRLEYQGTQFQIYTDLA
PITLQKRKTLAPITKTLQQHKIRYRWMFPVKLAFLHNGHPYQISTVQAGMDLLFKLGLQTRSNESPSQPSKPRRVDPIWE
RTQGSQRRNIPTT
>L1-62_XT_pol#LINE/L1 1681-5457  [Xenopus (silurana) tropicalis]
MKLKFVSHNTKGLNTPVKRRMAGQYFHKIQADIVALQETHWCDKGPPPYIHRYYQQIYATTYHTKSRGVAIAFRPHVQFI
LTNSVIDTESRYILINGTIMGNPVTFLNLYAPPTGAKQFFTKVFELLTLHAQGTIVVMGDFNLVLDPRLDRSQHTTNPIS
TPPKFLKQLLQETSLIDIWRTLHPGDIDYTFYSPVHNSYSRIDLILISQWQLPNVKDASILNITWSDHAPTTLTLQLTHT
PQPMYSWRLNESLLSDPTITTSITDDLQEYWLINLDEELSMGTIWAAHKTVIRGSFIRLASHKKKQRTETIVKLEKELRD
LEAKHKISTEPNISQKLTETRSELQKLLVNKAEKAIRWSKHKLFRLKDKPNQLLSQKLRKAQGFKQISHINNSKGVKLVN
PEDIIQEFHNFYSSLYDSPSLTSREKRDAFLETIPLPKLTQNERSLLNNPITEEEVIAAIKTLKSSSSPGPDGLPASYYK
KFKEFLTPHLTTLFNDMMQGHSLPTDMLQANLSLLPKPNKDTTNIQNYRPISVLNVDIKLFSKILGSRLNKLMPKLIHPD
QSGFILGRQTTDAIRRLLNIIADTNTSKSPILVLMLDVYKAFDSVTWPYLFNVLPRFNISGAFLEGLRVIYNNPTANIRL
FHKPSPPIQIKRGTRQGCPLSPLLFALAMEPLAQLIRTNTDISGYTKGSKEYKISLYADDICMTLTKPLTGLPNLFQTLD
RFHRISGLKVNISKTEALPINIPTPQKKLLELNFPFQWKQKTIAYLGVNITKSYESLYAANYPSILKKLRGRLADWTKLQ
ISLFGRIATIHMIILPKLLYLFRALPTPIYAKEIHTFQREVMNFIWNSKRHRINKDTLFRAYTQGGQNVPHFLTYYRAAR
LTQLAQWHAAPNTIPWVDFENTSISPLQTSALLWATTRNTQHHHISNPIVTHHLKIWALLKPKILTHQRNSNLQPLVGNP
DFIPGLNAKDFLWWTQNNFHKLADLITPRGLKTLDYLKENNNIPPSEHYRYAQIHHFYLSQKSIRPTMEMSGFELRCKTP
THLSGLITQIYRHLRTEPPNNMCKYMREWNADLPTPLPPQKWAQIWQSAKKISPNISVRETTYKLLARWYVTPALKNKFN
PEFSSLCFRGCKAQGNYYHSWWLCPIVEKFWSQTFQLISQVLQTEVTIDQELALFSLPTTNLTKTQNKLTIQFIAAARWV
IALNWLAPHLSISQLKSRIEYIQTMHYLTATLSDSLEQHLELWEPWTTFKTLSIRQSTE
>L1_AC_3_gag#LINE/L1 1214-2272  [Anolis carolinensis]
MAIPKWKVEKDRMDSRLNVRRSSLPEEGSLKDILMEIRKISEKQDLLQNEVQTMAKKQDLQYKSFQEEMAGLKKEWREEI
GAMKKEIIKNSNDISDLKIANRTNDKTQSKLQEKIEIMEEKGLKLEKMQERLEYQALEFQLRYRNVQEEEKEDIGWVITQ
LTAQLLQCTEQEACGQIDRVYRVQSNYTKKNKVVKDVIVHFLKKTTRDEVLRRNARNPIWYKERKVIILKEYPKSTLNRR
RKYYFLTDELKKRQIKYRWERYEGLMATYKEDKIWVTTEEEAKDFFRMLKKDVNINRLSLSSGSGKNPKETKKRRFESPK
HKDATVAELDLNTDQEDSEVDGPKEDEETHRDE
>L1-67_XT_gag#LINE/L1 122-1126  [Xenopus (silurana) tropicalis]
MPSKGNKKHPQADLTSFLAKTNRPSLKPSDGAVGPEAGERALSENASDAEDTSATDTAPITVSILKSLLSDLKISLHSDI
KEAIQTLRSDVHHIGNRVDAIEKQVDDISNVQNQYSDCLESLNKQVLTMKDKLADLEDRSRRNNIRIRGIPEQVKQEELT
PYFETLLTTLLPHVNATHLTVDRIHRIPKPKNLPTEVPRDTIARIHFYSTKEALLRLFRLNTQIPDQYQSLHIYADLSVH
TLNRRREFSLITDVLRKQGIPYKWGFPVRLIILRNGQQFSFTTPIEAKTILTDWGITETDTQMDISAPKIPKKRPLDWTT
VSPRKEKQQQRSNPT
>L1_Ele16_gag#LINE/L1 164-1201  [Aedes aegypti]
MKRRENTFCIDYSAVPKKPSYEELHAFIGTQLGLTRNDVQRIQCSRSTGCAFVKVNNLELAQKIVVEHDSKHAIEVDGQR
YTLRLQMEDGAVAVRLYDLTEGTSREQISEYLSAYGDIISAEPEIWDDKYAFGGIETGVWIVKMMVTRNIPSYITIDGDS
TYVAYYGQRHTCRHCGEYVHNGTSCVQNKKLLMQKLAVDPAARPTYANVTKTKAXSSINTKKPTPVGSPMLLRSAVSKSK
DTTNLNHADKQPSDGLNVSASAATAAALDFTTTSNPHSMAAPTKTFKVPRLPNISGDRGLKNSKGNDDDTDDSTTSSSSR
RSQGRPPGKKQKHYAGFEALGDNTDL
>LINE1-3_SBi_pol#LINE/L1 2141-5804 via tfasty with L1-6_SBi_pol, 4 frameshifts. L1-3_SBi_pol near-identical with more errors. [Sorghum bicolor]
MKXVFWNSRGLADLAKHRFLDELVKEEQINFIALSETGRDXFPDHVLKNLCGGHDFLWHTMAPHGRSGGILLGVDLNVFD
IGAIDEGDFYVKFTLRVKSNDFKFVLYTXYGPAQLQNKSAFLVELANTCSKETLPYXIGGDFNIMRXPEDKSSGDFDPKW
XNLFNAVIESLDLKEIAMXGRQYXWAGPGDNPTFEKLDRVXVSXEWEIMFPLTTVEPRDGNISDHTPLVLNTGASTHQTH
NRPFKFERGWLIRDGFYDMVANIWQSPCSGSTXLERWQFKIRRLRQYLRGWAKHXAGSYRKEKKTLLALLENLDKKAEIS
PLSDQEINLKHYLKERLVNLLREEELKWYERAKVKTLLEGDANTRFFHLVANGKHRKQHIYKLENDQGAVIXDDXLKSHI
TTYYKDLFXQPESSEISLREDQXLDIPQVXPEENDILVSPFTESEVRDAVFQMEHNKAPGPDGFPAEFYQVFWEXIKDDL
XPLFAELHREALDXYSLNFGIITLIPKVNNAIKIQQYRPICVLNVSFKIFTKVGTNRLNMVAKTVVRPTQTAFMPGRNXM
EGVVILHETIHELHTKKRDGVIFKIDFEKAYDKVKWSFLQQTLXMKGFSPKWCRWVETMVTGGSVGIKVNDDXXPYFQTK
RGLRQGDPMSPILFNIVXDMLALLINRAKADGQIRGVXPHLIDDGLSILQYADDTIIFIDHDPEQAQNLKLLLCAFEQLS
GLKINFHKSEIFCYXAAKEMESYYTSLFGCNXGEYPFXYLGIPMHHRQLLNSEWRKVEDRFKQKLSCWKAKYLSYGGRLX
LLNSVLSSLPMFMMSFFEIPKGVIKNLDHYRSRFFWQXSSDKHKYRLAKWDIXCRPKDQGGLGILNLQLQNKCLLAKWLV
NLXNTEGXWQSLLRNKYLRSKTLTQVTAKPNDSHFWRGLMRIKDEVLAKGSFDIKDGTDTRFWDDTWVXDKPLKVXYPSL
YNIVRDPHAXVSKVMTTSPLNISFRRALVDNKLTXWLSLVAKIXNVELVDGSDYFRWXLTKSGLFSVRSLYLHLMDTQTP
FXHRKIWKIKIPLKIKIFLWFLQRGVVLTKDNLARKNWKGSQKCICCNGNETIQHLFLDCPFTKTIWRIIFFATNLTQPR
SISHMFGTWLSNQNKRIRDLIWVGVAAMXWAIWRCXNDVVFNKMKTNSIMQVIFRGAYWLRFWAPLQRDETAEDALSTIS
KKLEVIALEXSNKGWKHXYCLN
>L1PA12_gag#LINE/L1 3022-4056 [Primates]
MRKNQRKNSSNSNGQSVLCPPNDRTSSPTRVLNQAELAEMTEIEFRIWIGMKIIEIQENGKTQSKETKNHNKMIQELXDE
IASIKKNLTDLIELKNTLQEFHNAITSINSRIDQAEERISELEDWLSEIRQSDKNKEKRMKRNEQNLREIWDYVKRPNLR
IIGIPERDGEKANNLENIFQDIVHENFPNLAREANSQIQEIQRTPARFYTRRSSPRHIIIRFSKVEMKERMLKAAREKGQ
VTYKGNPIRLTADLSAETLQARRDWGPIFNILKEKNLQPRISYPAKLSFLSEGEIRSFSDKQMLREFVTTRPALQEILKG
ALNIERKDRYQPIQKHTxVHRPVTL
>LINE1-7_OS_gag#LINE/L1 664-3400 via tfasty with LINE-05_OS_gag, 1 frameshift and 4 stopcodons. [Oryza sativa]
MARLGDPSTRPEEEECFIPTPHVTEVELKEWESTAVITWAAKAPASTTPKEVEAIFMEELHLREGEVVVSRHHPEAFIIK
FAHQRHCVEALKRGSVKRHGIELHFVKWRSLKSALGVALMFRVRLYLDGIPHHAxDADTVVRVVARTCALESIETSLLHP
PDTRWISVWLWTGNPSSIPKRVWLIFTNSTRSKKLDTVTVSERPPEPGNTGVKYCVYVHLEEIHDYTSAMVALDDSAAIT
PAKRRLLPWHLGVADGEPVPERVFSEFPHHPTPPRVEEDRGSRIRGDHRDVDHHDADSRVADCPDADHxGHGKEARDRRD
HGDEGRGDRRxQYNDDHPEFERGHGWRRHDDSDDDDDDRDRRSGRGRETWRGRDAAKPSGLNGLRERDRSPRRRDWGEGS
SYGGRHRAEALRPVSACPPLTLLPLTPSPTPQVANLQFMFALRTLNAQDATKNITDVHKHQPLSGEHAIVAPVADFNSFL
AKAHNLDAALQIDWTALQIGSPAPLTASVREHDKGNEAWSMAAMGQCSGPEEMGRQHVDIPVRCAFDCINHAIxVRAPAS
VIDDLEQALAKMEIAAAAATPESCRGMSPPPSLLRSRQSAHGPVTDHGLGQVDGVEARHGPPLIGPAKVVGEQAGQLPVG
PPGVGSPGLTRQPSPTGLASKGEEDEAIFKTRAHEATEKVAAAPLPGTHNRTPPALTQATGGSSPTADHTSPHSDRLGNL
FKAVTPPLLDRLSSTPPAKSRPILAKRCRIARLAEYCSTNPRRSSRLAGKSKMPPMQKCHRVLMKRLGLLRTDASLDEVL
AEYVAMFNGPLPPHIIAALTSIFDLTTTTTAMVTSHRRKPCSRWWEKVSLISPMRSTKWRLSLLAAAWSKLCLHVSSSPP
YHVVYSTALLCFSFVAPCGALDAARPFAMRWA
>LINE1-8_SBi_gag#LINE/L1 504-1862 [Sorghum bicolor]
LDEKEWSTVRPKYWWRRGEFTPHRRRPAPYAHHLPMAKTLQGKCLRCLGKGHSAASCREPVRCINCGRFGHKAQTCRSAT
LRRAQHYRPLPPNNRPPKPSPTPPPHAKRLPEAMAQLGDPEYRPQETSAVAATNGTMDEASVHFSAHAIVACRFQDRDDI
GTDQVKRAICSRLGVRDADVKVARHKPEDFLIVFRHPHHREAALHRRSLSVGSGQIKLLPWRTLPYGDHCDLRYHVRLCL
EGIPIHAWNESIAKRAVARSCDLDYVEHRSLRRDDMALCPDDTRALCLWAWTYNPSDIPKVTWLTLTGNAVAAHDAPVPP
RGRRGLTFRVLVHLDLIESPPDDFGQTSTRELTWRYGVVDGEREPRPRHASPAPAPRASRRDNDDDEDRGRRSDKGHNWG
ARLFRSLSRAPTRERERERSRSRHGRQQGRQTHDDRKRHQAVNTVDDRKATKQ
>LINE1-7_SBi_pol#LINE/L1 2966-6508  [Sorghum bicolor]
MAQINCQLLNWNVRGLNDDARKDAVNELVRDTRATIVCLQETKLQLVDQHTVTRTIGAKFANSFTVLPAQQTRGGILLAV
NEDFFDLSNILLSSHAVTATITMRADGLQWQITVVYGPQGDAQKLQFLQDLQNIPRPDHDRWLILGDFNLIYQAEDKNNS
NLNRQLMGSFKSTLDVLGLKEIRLNGRRFTWSNEQDAPTMTRIDRVFCTPDWELLFPTCYLHSLPSLMSDHTPLLLQGEL
DYRHAPSFKFENFWTAMQGFQETVHEAWNKEVFSALPLKRLHIKLSRTAKAINRWRKDKVGDTKLQLAIVKEILLQLEAA
QEFRALSDQELQLRRQLKTRSIGLAAIEKARIRQKSRLTYIRCGDANTKYFHIRASSRRRKNYIHCLHTDEGMVFAHEDK
EKVIQDYFSSHIGSSMPRQSSLDWHSLGYTPRDLSDLELPFTMEEVKSIIDSMPPDKAPGPDGFTGAFFKASWEIIKFDI
MAALNSLYAMNSQSFHLLNSANIVLLPKKSDARKVTDYRPISLIHSIAKIFSKLLANRLANKLDSMVSNCQSAFIRKRSI
HDNFLYVQNTVRKMHKLKMPALFLKLDIHKAFDTVNWSYLLEVMQALGFGQRWREWMSILFNTAKSAALLNGHRGPTFCH
GRGVRQGDPLSPMLFILAMDPLQRLLDLATEHGVLSPLPPAAARWRISMYADDAAIFTNPSRDDIQALKVILQIFGSSSG
LHINLQKSSVHPIRCNEVDLEQVLSCFPGVRGSFPCPYLGLQLHTRKLQKVHVQPLIERIGKRLPGWKGKWLNRAGRLTL
VSSVLSSMPTYHLTVFPLAAWAKKKIDKIRRSFLWKGEENANGGHCLVNWPTVARPKDLGGLGILDLQKFGRALHLRWLW
QDWTNESKPWVGSEIPCNEEDRLLFKASTSITIGDGAKARFWHDNWLDGEAPKNLAPHLFQLAARKNRSVQQELDNDRWI
HFLSNRINTTEHLEEFVSLWIRIQAIQLQPGVKDSIIWRWTADGCYSTRSAYRIQFRGSYATFKSDLIWKARAENKCKVY
TWILVQGKILTADNLQRRGWPHQDRCVLCNGPLETCLHLSLLCPYAKAVWNHILNWEHFDTQLTQFHQDPSSIKSWWEDA
VTKIPREQRRRFNGLVIYTCWNLWKERNRRIFNNAYEAALQVASKIKEDIAQRERAIQRAG
>L1PA2_gag#LINE/L1 1030-2046  [Primates]
MGKKQSRKTGNSKNQSASPSPKERSSSPATEQSWTENDFDELREEGFRRSNYSELQEEIRTNGKEVKNFEKKLDEWITRI
TNAEKSLKDLMELKTKARELRDECRSLSSRCDQLEERVSVTEDEMNEMKREEKFREKRIKRNEQSLQEIWDYVKRPNLRL
IGVPESDGENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRV
THKGKPIRLTADLSAETLQARREWGPIFNILKEKNFRPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEA
LNMERNNQYQPLQKHAKL
>L1_Mdo3_pol#LINE/L1 2273-6082  [Monodelphis]
MLGNTQVXIITLNVNGMNSPIKRKQIGEWIRIQNPTICCLQETHLRRVDTHKVRIKGWSKTYWASTDRKKAGVAIMISDK
AKVKIDLIKRDREGKYILIKGSIDNEEISVINMYAPNGIASKFLKEKLVELKEEIDSKTILVGDLNLPLSNLDKSNXKIN
KKEVRDVNEILEKLELIDIWRKINRDKKEYTFFSAAHGTFTKIDHVLGHKNMANKCRKAEIINATFSDHNAIKIMISKGT
WRAKSKINWKLNNMILQNRLVREQIIETINNFIEENDNDETSFQNLWDAAKAVLRGKFISLSSYINKLGRAEVNELDMQI
KKLESEQIKNPQKKTKLEILKIKGEINKIESERTIELINKTRSWYFEKTNKIDKVLVNLIKKRKEENQINSIIDEKGDLT
SNEEEIKAIIKNYFAQLYGNKYANLGDMDEYLQKYKLPRLTEEEIEFLNNPISEKEIEQAIKELPKKKSPGPDGFTSEFY
QTFKEQLIPILYKLFDIISKEGVLPNSFYDTNMVLIPKPGRSKTEKENYRPISLMNIDAKILNRILAKRLQQVITRVIHY
DQVGFIPGMQGWFNIRKTIHIIDHIDKQTNKNHMIISIDAEKAFDKIQHSFLLKTLESIGIEGSFLKIINSIYLKPSANI
ICNGDKLDAFPIRSGVKQGCPLSPLLFNIVLETLAVAIREEKEIEGIKIGNEETKLSLFADDMMVYLKNPRESTKKLVEI
INNFSKVAGYKINPHKSSAFLYISNTSQQQELEREIPFKITLDNIKYLGIYLPRQTQELYEHNYKTLSTQLKLDLNNWKN
INCSWVGRANIIKMTILPKLIYLFSAIPIELPKNFFTELEKTITKFIWKNKRSRISREIMKKNAKEGGLAVPDLKLYYKA
VVIKTIWYWLRDRKEDQWNRLGVSDLSKTVYDKPKDPSFWDQNPLFDKNCWENWKTVWERLGLDQHLTPYTKINSEWVND
LNIKKETISKLGEHRIVYMSDLWERKDFKTKQDLEKVTKCKINNFDYIKLKRFCTNKTNVTKIRREVTNWETIFITKTSD
KGLITQIYKELNQLYKKSSHSPIDKWARDMNRQFSVKEIKTINKHMKKCSKSLIIREMQIKTTLRYHLTPSRLANMTAKE
SNECWRGCGKVGTLXHCWWSCELIQPFWRAIWNYAQRALKDCLPFDPAIALLGLYPKEIIRKXTCTRIFIAALFVVAKNW
KTRGCPSIGEWLNKLWYMLVMEYYCAQRNNKVEEFHGNWNNLQEVMQSERSRTRRTLYTETDTLWYNRM
>L1_Ele21_pol#LINE/L1 1253-4444  [Aedes aegypti]
MDMLSYNIGTLNINGIANENKINALRSFIYLMDLDILMLQEVHEHITISGFDTFSNIDLNKRGTAILVKSHINTSHVQKS
IDSRVISLKIENHTTICNIYAPSGTAQKSLRERFFTDTIHYYVNNGDGRLIVGGDFNSVIDKKDANHGSNFSQSLKFVVQ
SLKLNDVWQIVHKNAVDFTFIRSGSGARLDRIYVSDDLKGYVSTVRTNVCAFSDHKIVILKLKLPNLGRPFGRGLWRLND
LALTDENLAEFREKWIYWVRQKRYYDSWFSWWNEYAKIKTVSFFKWKYSTLKRRYSDTMEFFYSALNILYNDYLTNPDVL
SEINKVKAKMLALQKEMSNNFYGRSETFISGENSSIFQLGEQKQRREKTHIKTLRINGQDEADIEIVTEEITTFFKNLYT
KSNVVIENSFEPQKTIQDNFPANSRLMDPISEEELFQAIKTSQSRKCPGKDGLTKNFYIKCWEIIKTELLLVVNEVINGK
TSTKFLEGVIVLIRKKKTNNDISGFRPITLLNFDYKLVSRILKNRLVKLNEALLSNTQKCSNGSRTIFEATCGIRNKIVE
INLKRKKGLLISFDLEKAFDRVNHEYLLATLSKMGINNRFVDFMRLCQNNTYSRILINGNMSETIRIERSVRQGDPLAMI
LFCFYLEPLLQKIQNICEDEMDLLVGYADDISLIIFDVRKLSVVKQIFDNFELVAGAKVNYNKTKAMRIGSNNNFILPDW
LEHEEYLKILGIWFNNNSNAMIQKNWDEILQNLRYMLWNSQFRNLNLIQKIIFLNTYASSRMWYTASTVSVHKKTLTKIK
SLFGNFLWYRCSLRISFNQLCLPRKRGGLGLISPEHKCKSLLINRFLRLRQSSPFLHNYTDRIENPPNMKGLPCNAHFLK
TVYLELAYISENIKNNPTSQSIYNHFCSNLPKPHITEKYPQFRWDIIWKNVFSRQISSDHQVTWFLLINEKIICAEKQFR
FGSRVSPNCVYCPQEIEDLKHRFSTCPKIRNCWWFTVTQIKLLNRRKFRNISFDDFKFPVLRTYNQLERKIASKMFLEFL
RYAIANDREDVSVEELKFIMNCNI
>L1_TD_pol#LINE/L1 4016-7645 via tfasty with Karin_TA, 8 frameshifts and 2 stopcodons. [Triticum turgidum subsp. durum]
NSRGLADLAKQRFLAKTTLEHHLDFVALLETRRDNFTSQFLQTLSSGIDFDWHILPPRGRSGGILLGVRCETLEVLNVVQ
GYFSVKFRVRLKLDGFRWSLVAVYVAAQAEFKPDFLADLVRICGDENLPVLVGGDFNIIRRREEKNNDNFDGRWSMMFNM
IIESLNLREIELTGRQFTWANSLPVPTYEKLDRVLASVEWEQKYPLVSVHTTQRAISDHTPLFLDLGEATHVATKNTFSS
EQSWFEREGFMDMIAREWAKPVMGRTHVERWQNKVRPLRQFLRGWARNESGIYKQKKERLTKLIEALDVKAETTLLSVHE
HRTKSEAGQGLRALLREEELKWALRAKMLKVVQGDDMVANGKHRKKKIIQLEQDEGTIVGHENLKSYISNYYKSLFGPPN
TSTVSLDESVIDDIPQLQAAENDVLSAPFLKKKVHLAVTQMKPNKASGPDGFPAEFYKKCWHIIKYDLMPMFHDFFQGHL
ELFHLNFGTITLLPKKKDQIEQFRPICLLNVSFKIFTKVGTNRLTQIAHSVVQPSQTAFMPGRHILKGVVVLHESLHEIH
SKKLNGVILKVDFEKAYDKVKWPFLQQAMRMKGFSETWRHQVDTQVQKGSVRIKVNDDIGHYFQMHKGLRQGDSMSPLLF
NIVADMLAVIIGRAKQHGHVEGLVPHLVDGGVSILQYADDTIIFMEHDMSKARNMKLILCLFEQFSGLKINFHKSEVFCF
GKAKDKEHTYRQLFGCELGALPFSYLGIPIHHRKLSNKEWKVIEERIEKKLNCWKGKLMSYGGRLVLINLILTSMPMFLL
SFFEIPKGVRKRLDFFRYRFFWQSDEAKRKYRLVCWDILCRPKDQGGLGIENLKIKNKCLMRKWLYKLGTEPEGMWSQIL
RNKYLHSKTLARTTIRPTDSPFWKGLMRTKDLFFCRVKFLVGNGMSTRFWKDTWLGETPLALQYPTLYNIVQRKEDYVGI
VLXTIPLNIQFRRTLVDARWTAWMHLVRRLIEVRLSDVPDSTQWKLTKNGIFTVKSFYADLINSAPSPRSLHTWKVKVPL
RIKIFMWFVHKQVILTKDNLLKRRWVGNSRCCFCDXDETIQHLFIECPLAKLLWRTIYIAFNINPPVDIASLFGTWLAGV
EQITAAHIRIGICALLWAIWNCRNDMIFNRQHNLTFLQVIFRATAWIRTWPLLTPMDSREPLITGCNQWEMVARAIFNRF
GWRSHNRIKG
>L1MC1_gag#LINE/L1 L1MCa_5end_778-1745 via tfasty with L1MA6_gag, 4 frameshifts.  [Eutheria]
MSGYQEKITRHTKRQKTQFEETEQASEPDSDMAGMLELSDREFKTTMINMLRALMXKVDSMQEQMGNVSREMEILRKNQK
EMLEIKNTVTEMKNAFDGLISRLDTAEERISELEDXSIETSKTEKQREKRLKKNEQNIQELWDNYKRCNIRVMGIPEGEE
REKGTEEIFEAIMTENFPQLMSDTKPQIQEAQRTPSRINPKKKQNKTTPRHIIFKLQKIKDKEKILKEARGKKHLTYRGA
KIRITSDFSSETMQARREWSEIFKVLREKKPHQPRILYPAKLSFKSEGEIKTFSDKQKLREFVASRPALQEMLKEVLQRE
GK
>L1MA1_pol#LINE/L1 3485-7312  [Primates]
MAGVSPYLSIITLNVNGLNSPIKRHRLAEWMKKQDPLICCLQETHFTYKDTHRLKIKGWKKIFHANGNQKRAGVAILISD
KIDFKTKTIRRDKEGHYIMIKGSIQQEDITILNIYAPNTGAPRYIKXILLELKREIGPNTIIAGDFNTPLSALDRSSRQK
INKETSDLICTIDQMDLIDIYRTFHPRAAEYTFFSSAHGSFSRIDHMLGHKTSLKTFKKIEIISSIFSDHNGIKLEINNK
RNFGNYTNTWKLNNMLLNDQWVNEEIKKEIEKFLETNDNGNTTYQNLWDTAKAVLRGKFIAISAYIKKEEKLQINNLTMH
LKELEKQEQTKPKISRRKEIIKIRAEINEIEMKKTIQKINETKSWFFEKLNKIDKPLARLTKKKREKIQINKIRNEKGDI
TTDTAEIQRIISGYYEQLYANKLENLEEMDKFLDTYNLPRLNQEEIQNLNRPITSNEIEAVIKSLPVKKSPGPDGFTAEF
YQTFKEELIPILLKLFRKIEEEGILPNSFYEASITLIPKPDKDTSKKENYRPISLMNIDAKILNKILANRIQQYIRKIIH
HDQVGFIPGMQGWFNICKSINVIHHINRMKDKNHMIISIDAEKAFDKIQHPFMIKTLKKLGIEGTYLNIIKAIYDRPTAS
IILNGEKLKAFPLRSGTRQGCPLSPLLFNIVLEVLARAIRQEKDIKGIQIGKEEVKLSLFADDMILYLEKPKDSTRKLLE
LINKFSKVAGYKINIQKSVAFLYANSEQCEKEIKKVIPFTIATHKIKYLGINLTKEVKDLYNENYKTLMKEIEEDTKKWK
NIPCSWIGRINIVKMSILPKAIYRFNAIPIKIPMTFFTEIEKTILKFIWNHKRPRIAKAILSKKNKTGGITLPDFKLYYR
AIVTKTAWYWHKNRHIDQWNRIENPETNPHTYSELIFDKGAKNIHWGKDSLFNKWCWENWISICRRMKLDPYLSPYTKIK
SKWIKDLNLRPQTMKLLQENIGENLQDIGLGKDFLSNTPQAQATKAKMDKWDHIKLKSFCTAKDTINKVKRQPTEWEKIF
ANYPSDKGLITRIYKELKQLYRKKSNNPIKKWAKDLNRHFSKEDIQMANRHMKRCSTSLIIREMQIKTTMRYHLTPVKMA
YIQKTGNNKCWRGCGEKGTLVHCWWECKLVQPLWRTVWRFLKKLKIELPYDPAIPLLGIYPKERKSVYRRDICTPMFVAA
LFTIAKIWKQPKCPSTDEWIKKMWYIYTMEYYSAIKKNEIQSFATTWMELEIIMLSEISQAQKDKHRMFSLICGI
>Crack-8_CQ_pol#LINE/L2 3-2870  [Culex quinquefasciatus]
XEWLISNTNLPHEESSLRIMQLNIRSMNNVTKFDSIKEVLHRFDRRVDIIVLGETWIQQDRVCLFSIAGYKSMFSCRNES
NGGLAVFYRDELDVDECCNTIKDGMHHIQLVLKRGKPIDFHAIYRPPNFEARRFISEMEQFVSSSKPGHDCIIVGDMNIA
VNQPSVNTVQEYTRVLESYNTYVTNNVVTRPMSSNVLDHAICSEALLDKVVNETVFHDLSDHCLVLSSFNLGCSTARTTL
EKDIIDHRRLNQQFHEFMIGLPMEMSANEKLTAVITNYNNFVKQCTKTVTVQAKIKGHCPWIRFDLWTNMRWKENLLKRS
RRNPLDEEVAGLLSHVSRMLQTKKDRCKKDYYQRLLSNTSQKNAWRIVGDVLGRNGVNDAPRSVYDNGGVTTTDMNKICQ
LFNEFFCSVGHKLAATIPSDRNICRFNTLPRRPDSMFLSPTTYNEVVSLINQLDTKKCAGPDNISATFIKVHYEVFAQLI
SDVFNEIIMTGQFPDCLKVARVVPVYKAGDKKDVNNYRPISTLSVLDKLIEKLIVCRVNAYVTRKTDDRPAILYSHQYGF
RPGSSTLTATCDLVEDIYSSLDSKLLAATLFIDLKKAFDTINHDLLLQKLERYGIRGTPLELLKSYLQGRQQYVSIGKHR
SGWCPITVGVPQGSNLGPLLFLLFINDIGKLQLNGKTRLFADDTSVSYRGGTCEELQRQMAADIVLLNDFFRTNVLSLNL
AKTKYMIIHSSRRRVPDHPQLIVNGQTVEEVSSYPFLGLVLDSTMSWTAHIRALKSKLSSLCGIFWRISSFIPYPQMKML
YFALVHSRIQYLVANWGAACKTDLHDLQVLQNRCLKIISRKPLLFPTTQLYSDCTDSILPVKALYELQTMMLHRKISTDA
KQHHNFALRRRESSRASRQLGDFILPRPYTEFGRKKFSYLGGKLYNALTTDCKKTTTIAAFKRLLTINMKQRIHLFV
>Crack-7_HM_pol#LINE/L2 108-3360 via tfasty with CR1-42_HM_pol, 1 frameshift. [Hydra magnipapillata]
MAIKFPCGICHKSVKKNHRALQCDYCDTWIHIKCNRIDNKTYNSLKTESGSWYCLICLENTXPFSSLIDSEFQLTINDIN
GLSYNSDDEIQTNLKNPIKNFKNFNNNKIKCKYYDTXEFNRVVNKDCNVFFHVNISSLAYYIDDLKCLLSLINHEPSIIA
ITESRLIHGQLPKTNINLNGYSVEHCDSSSNRGGTLMYIKMDLKYKIRADLQIQKTKELESTFIEILRPGKKNIVIGCIY
RHPCMCIAEFNNFYLQTLIEKVSIENKDIIILGDFNINLLNYDSSSDVSNFLDSMCSYSLFPFITQPTRITPQSKSLIDN
IFLNFYKPNLVSGNLTYSLADHLIQFIAIPSKKFEKLHPKSYRRCFKNFDNKLFLDQLKVTDWDPVIKGANENISNSTTK
FLEIINKLLDYHAPFKLSTIKIQKTLSKPWITSGIIKSIKIKNQTXKVYEYFQRFKSYRNQINNLIRYSKKLYYSKYFNE
NVSNLKNTWKGIKSIINLKSKNNHVIDSLTINNQNITDKKIIANTLNEYFSTIAENLASKIIPPKNDFSYYLKNCNPTSF
YITPVTPQEIKDYISATNSKKGIGPNSIPSKILILASQELSYPLSVIINESFKSGIYPDPFKVAKVIPIFKNGSIQDCCN
YRPISLLSNISKLLEKFMYIRLSGFLHQSNILYRLQYGFRKNHSTNHALIDITETIREALDQKKFAGGVFVDLQKAFDTV
DHEILLSKLSHYGVRGTALQWFKSYLSNRSQFVEIANTSSSTKSTSTGVPQGSILGPLLFLVYINDLNTCIRYSRTYHFA
DDTNLLIVEKSLKKLNKYLNYDLSCLVQWLRANKISLNTKKTEIVLFKSRGKKIEKKLNFRISGQKLYIVDKIKYLGIIL
DENLXFNHQLKSISIKLSRANGMLAKVRHYVDYETLINIWYAIFGSHLNYGCQIWGQNYSVNKNNLINLQNKSIRLIHFQ
QNSFDLDILYSISKITKLDQMIYLLNSAFAWDVIHKNIPMGFNNYFKFTGNIHNHNLKSVSCNNLSIPSKQTYKYGIKSI
KNHSIHSWNSLPSEIKKSTNQVNRNRFIKQAKEFIMKMQDDTTK
>Kiri-1_AAe_pol#LINE/L2 1528-4353 [Aedes aegypti]
MDEFPLNNASPNTIIPRIVLNAALQPEFLNICHMNVQSLTARNFSKFHELKLNFTDSKVDVICFTETWLNSTINNSMLSI
NGYKLIRNDRNRHGGGICIYLRNNLSYKVVSMSNNSADDFCGTEYLNIEVKVGEDKILLGVVYNPPNIDCTDTLYDVLEN
CTIKYKGSYIIGDFNTDLLKHFSRSRKFIEMLXTLSFACTNSEPTFYHRSGCSLLDLFITDAPDTVVKQDQLSMPGVSHH
DLIFCSLRYSPNRQKDYVSYRDYANFDSVALFDGFHSINWNLFFNMDNPDELLEYLNYHLLKLHDQYIPLRRKKDNKTPW
FNNDISHAIINRNLAYNKWKRTKEQIDRNSYKRLRNKANELIIQAKAKYDKQKLKVDLPSKQLWNNIKELGLSKDSRFLE
QNDLTADEINNYFISNFTNDDSTPFRNLSTDGFKFLEFLEHDIINCIFSVKSNAVGLDNIPIRFIKILLPLALPIYKYLF
DSIIKTSIFPRAWKNSKIIPIKKKGNCSAXSNLRPISILCALSKVFEKLIKCQINKFISDNDFLHPHQSGFRSNHNTNSA
LIKVHDDISHVIDKKGLAILLLIDFAKAFDRVSHSKLVKKLSTKFSFSQTAAELIQSYLSGRQQAVFHNGLLSTFSEIKS
GVPQGSVLGPLLFSLFINDLPAVLEYCSIHMFADDVQIYICISGEVDMNEIARKINHDLVNISHWSRNNLLEINPSKTKA
MLISKRKNPPNPPIISMDGQIIQFFDRLNNLGVIFTTNLSWAAFINGQCGKIYGTLKRLNMISRHLDTSMKIKLFKSLIL
PHFTYGEFVYSHASALSLNKLRVALNACIRYVFNLNRFSHVTHLRDVLLGCQFSQFYTLRTCVQIYKIIKTNSPRYLYSK
LQFLRNTRTLSLVIPHHSSAYYGQSLFVRGIHNWNCLSPLLKSSSSILVFRKGLLSEIERMR
>Kiri-4_CQ_pol#LINE/L2 1382-4225 [Culex quinquefasciatus]
MTNIANLRIGHLNVRGLEHHIDGVKLLLDAQQYHFFGVTETKMRASAPVGPVRVPAYNLIRHSLPSGRGRGSKACGGVGL
YVRQGLKATPVIKSTHDIAAPIATRVEYMVVQIRINELNVGVAVVYNPSCSNPSFAVLYERVLLEMLDLGFDRTFIMGDF
NINVASVLPSLNLTSLRRIHSTFNLTVLPTGPTRITDTSSTTIDLLITDCPQSVRKAKAVSASAISDHEVIYMLADVQVR
NQNRRTTRIRNFRNVDVLQLQAEYRTKDFQRFYESNDVEEKATLLTADLQELLDRHAPERMIYVRDERTPWITHQIKQTI
ELRDLALKLYKRNPNRRRGDQQWLEHSRLHDRANSLIHAAKKRYADQHFNHELPAKKLWSNLRREGIHNSAKADPPAEGV
DADDLNRFFSDGHRELGTNRGSTRSRTPAHRTVVDHGENGFNFRQTNSEEVNRKIHDIQTNATGTDGIPISFVKMLCPLI
LPELCHLFNAIITARAFPSLWKTAIVTPIPKQPSPSLPKHFRPISVLPAMSKVLEKILLDQITDHLDNPNAPLLAKHQSG
YRKGFGTTTALAKVTHDIYSNLDNNSCTVMVLVDFSLAFNCVDHHLLKDKLNREFRFSSASCELVASFLGQRKQSVRLGD
AVSAVRDVTDGTPQGSCLSALLFSLFINSLPGVLRCEYQLYADDLQIYVSGPIEQIEDLIASINNDLAAITNWANQNRLH
PNPKKTQAIVFTKAGSVRPHTDIVFSGEVVPLSDRVVNLGLLLDNNMTWKHQVNSVTQKVYNTLRTFRRFAAVLSQPTRR
KLVQAVIMPMFTYCDVVYYHGLPAAHKEQLHRCFKSAVRFVYNLRRRETTAAVRSTILGHDLPINYQLRTSCFMKKGYDG
NLPEYLQQHLVRGQLERTRSFIIPRHTTTSGRSVLVAGTTCWNNLPLELKTQPTLSAFKSAFKRSFDD
>Kiri-1_DEl_pol#LINE/L2 1412-4234  [Drosophila elegans]
MGDSNNNNININPNRSNSHAMLRVLGEKRAGLNVCHINAQSLTRKIEEFRYLFINSSVDVICVSETWFVPNLCDVLVECD
GYNLHRSDRDSHGGGVAIYVSKKLCSTFICKHSTSSAIEYLFIEIRCQRYADKLLIGCIYRPNCRIDYEQFLNIIPDVSI
NYSDVIITGDFNSDILRXSHLAEDMKSLGMKLVNFVSPTHFTKTRNSLLDLFFVSNTDKVATYDQLIVPSFSKHDLIYLT
YALDLQYLDHPIVFRDFRNINYDLLDSTFNLCNWNDIYSLSEVDEQVNLLQNNICYLYNCLVPVRSKVIRFSEKPWFQRN
IKDAILQRDGAYNKWRRYRTPQAYAVFKSLRKKVTKLTDTAKANFYSHKFNNASSTAQTWKIIKNLGICKVKPRLEQDMN
VNELNKKFLSCTVPEITENKYLNPRFVPETVCDIRFRFLCVNQCDVLQSILRIKSDATGSDNINPKFIKILLPKILPYIT
YTFNTVLTKSTYPDCWKAAKIIPIPKSNNEYRPISILPYLSKVFENLMADQINKFMSDNAMLTNNQSGFRKNRSCTSAIL
KIADDIREQIDENNVTLLVLLDYSKAFDTVNHNVLCAKLRNMFMFSKTSVKLVSSYLQNRRQSVVLSSVSSSYENVNRGV
PQGSVLGPLLFTLYVNDLPNALSECNVHLYADDVQMYVSRPLNRINECIDVCNRELERVNEWAGNNGLGINPSKSKCLVI
SKRKIIFNNLQPLSMNSTPLEYVDTAVNLGFTFNRTLTWNDHIKKSVGKTYGIIRTLSVTKNCLPTHIRLLIAKTCIVPA
LFYGVEVFSNCDTTSKNKIKVLFNCIARYIFNQPHTDHVSEFSLKIFDISLNEWIKMRNLIFLQKIIFQKEPSYLFEKLQ
FTSSRRANNLTCIRPRSLTSERQFLINAIRSWNQLPNHLKNISSATQFKIKLFTHLKNTIT
>Crack-4_HM_pol#LINE/L2 956-3978 via tfasty with CR1-21_HM_pol, 1 frameshift. [Hydra magnipapillata]
MDSNNIFQQGFENIIFDPFEDNLKNITNIFQETQRNLMKTPYFDPYEFKGKKKHNSFSILQINIRSINQNFDKFKEFLNI
INYTFDVISLSETWHENTLDSNFIYELPNYKLISQPRESNKNGGGVGVYVLNKYSFKIKNKLCSSNLNYESLFIEIINDK
DKNILVGCVYRPPSGKIKLFEEFIKNTVSKINKEKKKLYIAGDINLNALTYKNNPKTKSFFDMLFKYNILPVINKPTRVT
KSSATAIDNIFINNYIETSFETGIFKTDISDHFPIYVKINPFKAPSNGDPKVITLKKRNLSEVNKNNLSDKLKQETWNQV
FNCDNTNKAFNIFLNTFLDIYNETCPYEFKITKKKTILNPWMDKTLIKCSRNKQKLYNKFLKNRTEVNEKSYKKYKRFYE
NLLKKAKKTYYSKEITKXKFDVKKTWDLINDIMGRKKINTAILPQRININKTDIYCPLQISNELNKYFTNIGPNLAKKII
TTPNSFQKYLKSLNGAMLQDREFSHEEYEIAFSFLKKNKSPGFDDVSSNIVISNKKYISKPLFHIIKLSIKEGIFPEALK
LAKVCPIYKNNDQSEISNYRPVSVLSVFSKIFERVIYNRIYNHFNENNLFYTKQFGFRKKHSTEHAIIEIVDQITKGFEN
NSFTLGLFIDLSKAFDTVDHLILLEKIKHYGVINKTYDWLKSYLTERKQYVISKESGQLNILCGVPQGSILGPLLFLIYV
NDFNNASAKLNSIMFADDTNLFLSNCDINQLYSDMNSELMNVDEWFKANKLSLNVDKTKYTLFHKKSQDEKLPLKLPDLI
LNDALISKNDSIKFLGILIDENLSWLPHINYIQSKISKTIGLMYRICPYVTSESLKLVYFGLIHCFIYYANITWASTQQK
HACRLXYIFYKKXYEHAKPLMEDMKMMNIYEINIYQHLIFMYKCNNSLIPKNFNDKFTXNVNKKYSLRINQWNTYKLPRI
NSKYSEYGISYRGPKLWNTFQKTKNLNTVKSLNSFKFIIKNEIFKLDK
>CR1-77_HM_pol#LINE/L2 799-3876 via tfasty with CR1-35_HM_pol, 3 frameshifts and 1 stopcodon.   [Hydra magnipapillata]
MDSNNLNDFELSYNFFRTDEFLFNNQSDPDLNYFCEAHALQSNCSYYYADEIKEFLNCRYFNTFHINIRSISKNFENFYL
SMKESLNIFSLICMSETWCNSNNSNLNSSIFLPGFNIISLDRKNGKRGGGLIVYIREYLQYIIRPDMSNSDDDNEVLTVE
IQTKKKTKNLIISFCYRPPSGSIENFNLFLNDIxKKSICENKLYYLIGDINLDCYQYHTNYGVKKFYNELFELGAFPIIN
KPTRITPTSKTLIDNIITTDVFNKSLKKGIIKSDVSDHFPIFFSINIDADIISQQKQTFKKRFFSNDNLKTFKEQLSYLH
WKQIDTCADANLVYNTFFKTFYEIYDANFPKQIVNKKAKSLMSPWITKELKKSSKIKQKLYVKYLKTKTEQNKVLYKKYA
KEFERQKKKRKKKYYSNLLDRNNLNSKRTWEILRELTGMQKLKTSSLPKTIKINEETSFDQIAIANKLNEYFVSVGPNLA
QQIPILKNKLNNYAFPITSFLNSFELSFEEFELSFKKLKSNKSVGYDDIYCNVIIDSYGVIKDILFQIFKCSIKQGIFPD
NLKIARVSPIFKGGNSTNVSNYRPISILPVFSKILERILYNIIFNHLSSNNILYQYQYGFKKSNSTEHAILQTTRNIAES
FEKSQYTLGVFIDLSKAFDTIDHKILFKKIEYYGIKGNILMILKSYLSNRKQFVYSNTTVSSNLLDITCGVPQGSILGPL
LFLIYINDLPKASNLMTVMFADDTNLFLAHNNITTLFQNMNIELTKVSDWFKVNKLSLNVEKTKWILFHQTSKKKLLPPV
MPLLFIDKVQIKREQTTNFLGINIDENLSWKYHIDLLCNKVARNIGVMYKARNALNKHSLTQLYFSLIHCHINYANIAWG
NTNKSKLLPLYRQQKHVARLINYKDRFAHAKPLLFQMKILNIYQLNIFNILCFMFKCKTNESPVSFHNLYTLKDKNKYNL
RNDNQIQQPLSLTNFGKSCISYRGAFLWNKIVLKNFDFSHEWNYLSFKKKLKEIVLSFEDIFLYF
>CR1-66_HM_gag#LINE/L2 85-861   [Hydra magnipapillata]
MALTLQEIKKMFKEMFCEFKKEMFNEFKKETEAMFKKHEQTVLDIISGNLKILNERLDKLETNANENVIKIKKIEKEIEE
ISDSINFNESIIDKKIEYNSKQLEKELIENEILKEKHRKLEDRSRRNNLRIDGLYEDEKETWGQTEEKVHLFFKQKLGVE
DIEIERAHRTGQKKNGKPRTIVLNLQRYKDKVKILKELHRIKGTNIFVNEDFSLETVAIRKKLFTDVKQRRLNGENVAVR
YDKIICFKNSFYDNNRKK
>CR1-Zenon-1_XT_pol#LINE/L2 786-3986 [Xenopus (silurana) tropicalis]
MSLLLLVLSFMFVLPKVTSSFSPPADCPYSITISSSLLHSTHCCSYNLYTFLKNLAPPTNTSQKHNNFKSFSHLLSLSLL
LLLAAGDISPNPGPCRIPISYRPRNASLLVKPSQTANLSNLIQIPTLSSSYLPFSCALLNTRSVTNKAALIHDLFCSKSF
HLFAITETWLSQNDNAIEAALSYGGLSFSHTPRITGRGGGVGVLLSPHCRFKLIPIPPTFRFPSFEVHAVQLFHPLSVRV
AVVYRPPSSKSLATFLSDFESWLSFFLCSDTPAIILGDFNCHIDDPSQPWPSRFLHLTSSFDLRQWTNTATHKDGHFLDL
VFSKNLDLSAFNSEPFPLSDHHLISFSISHVSPSPSTNAQPKTLIRNTQRVDITALSNSLSSSLSSFCASSDPELLVNTY
NSILSSAINTHAPLQPQHSRAHNPRPWLNPQTRFLRSCARSAERIWRKSRVKADFLHYKFLMVCLNTALSQAKQVYYNTL
VNNNKSNPRRLFSIFNALLHPSPNESIISEHTPQDFADFFKSKVDSIRKQFSQPSDTGNLNLPKSPLSVFSSFNLVTESE
VSQLLRSSPPTTCSLDPMPSSLLKQCAPALTPALTHIFNSSLASGTFPSLFKQACVKPILKKATLDPSCLSNYRPVSLLP
LASKLLERLVFSRVTNFLCTHNLLDPMQSGFRPAHSTETALCRVANDLQTAKAKGRYSVLILLDLSSAFDTVDHSVLMQI
LYSLGIRDQAASWFSSYLSNRSFSVALANKSSTPVPLSVGVPQGSVLGPLLFSLYTLSLGDLISSFGLKYHLYADDIQIY
LDTPALTTDVQTQIGNCLLAISSWMNQRHLKLNLAKTELMVFPPKPGPSPPFTITIDGMTINPVNSARCLGVIFDQSLSF
SNHINNTAKTCRFFLRNIAKIRPFLSQVTAKTLIHALILSRLDYCNLLLTGLPDSHLSPLQSILNSAARILLLSPKREPV
QPHLSSLAWLPVKQRIAYKILLLTFKALHSSAPHYISSLVSLHVPGRLLRSSQSLRLFTPSTPTALSRLKPFYLAAPYLW
NSIPESLRREHSPTLFKKKLSCYLLEH
>Crack-4_HM_gag#LINE/L2 165-907 via tfasty with CR1-21_HM_gag, 1 frameshift. [Hydra magnipapillata]
MVMMRKLLNLQKETIILSFFTETVNTINLKFESVQKNIQDVKKDLDDIKAGLTFVGDACDDKVKSVNEKIDKVKEELSSV
KIIQGKISTDNNDLKLKSVDIEDRNRRNNLRIDGLSESSDEKDWEKTKEKVNKLFAENLNIKREVKIERAHRVGVLNNNR
ERTIVLKLHDYEDKKVITDNASKLKGTNIFINEDFCSTTRKIRKELFAKAKIHRQNGFYAKVVYNKLIVHEFRQNKCAST
ENVIPRDK
>Crack-1_CQ_gag#LINE/L2 212-991  [Culex quinquefasciatus]
MTGSDRRSINSKGGKNGKSANSETANSTVSQQLQEISAKLQKLDDLEKLNKDLYGKLLQLAHRVDVVSAENRLLKREIED
LRQDRLQEEVLIKGFKFERPNQHLEVFRGVCERAGFDTPDDVKEVRPLVFKNNKRTDAVLVKFWRVEDKGRFIRCIRSLK
KPIAPRDIDIRSPNKFILVQDHLTPEKHKIHTKAWDLCKLGLQRPWIYKGSTWITHPESNKRFRVADLGDLADIEFVLVT
REGTAQGSATVQSKVTVSEQ
>L2-1_BM_pol#LINE/L2 257-3202 [Bombyx mori]
MTDMLNCSDSSDYLSITSSSSGSEDSFLSIPSLAETLDSNFSDVPRNLNVVHINAQSIPAHFSDMLVSFDIKNIHAVLVS
ESWLKPSLPSISYSLPGFNLIRNDRIGKGGGGVAIYLRSHIPYTIVSASDQSPLPNVSEHLFIEVGLTHAKILLGVFYSP
SLHINYFSSFEKVLEDLLPCYEHTIIMGDFNTCLLKRDHRSSSLESIVTSSNMHILPLSATHHFPNSSPSLLDLILVSSL
EHVARHGQCSADSFSYHHLIFLSYKIRPPKRKPTVILQRNFGRMDMDAFVADAKTVDWEPVMAASSIDDQVAIFNSLMIX
LYDIHAPLRAIKIKHQPAPWITDHIRDLKRRKSAAKTKYKLRPTEFNRTRYVKIRNRCNMVCRDAQRRHIHDSVKVEDPA
KVWKFLRSLGVGKSRQECNSTNINIDQMNIFFTSSSLLDDVVKSSTINSLSNITAPDHSSFKFRQFTACDVRRSILSIAS
NAIGTDSISRNMVIPLVDILLPILCHILNXSISNCVFPSVWKEAQIIPLPKKPNPKSFSDYRPISILPFLSKVLERLIHN
QLSSFLNSHDLLNPFQSGFRPGHSTVTALVKITDDIRLGMENGQLTVLTLLDFSNAFNTVDFDILLAVLRSFNISPTVIE
WFRNYLYGRRQCVRLGESISSWCNTSAGVPQGGVLSPLLFSLFINSISCNLTSSYHLYADDLQLYCQAPLPQLHDAIRTM
NSDLRVLSEWSNAYGLKLNPTKTQCIIVGSQRTCSKIEWTHLPQLSLDGINIPFSDTVKNLGVIIDRSLSWGPQLVSVSR
KLFSSAGSLRRLRNFLPTSTKIALAQSLLLPIIDYADASYLDLTEAQLNKLERLQNFIIRFIFGLRKYDHVSEYRVKLKW
LPIRYRRNVHILSLLYSVLFNSSSPRYLQERFDFLHTASSHSLRSSENLMLKFPAHGTSFYDHSFAVEAVRLWNALPLSV
KQSSSPEIFKSRLKSHYFASMI
>CR1-67_HM_pol#LINE/L2-Hydra 1439-4472 via tfasty with CR1-58_HM_pol, 1 frameshift.  [Hydra magnipapillata]
MDLGNIFKEDKLPTTFNLCTFNCHGLKSNFEYTKSLILSHDITFICEHWLSNLEYFIIKNIYKNTHSSFFHQANKHEQGR
PFGGNAFFIRKHLFQNIIILYEDDHIFAINLKKNQTNIIIIGIYLSSSRNNQTSLEDYKSQLDIISGVINNYEGVAEFIV
LGDFQSFPHGIYDSLKRASSTKNNYSVVLSNFIKSNKLELVDVTKGSGPNITYHHNTLPNASYIDHIAFSKYTSLLYSNC
FVIPFLSQNMSDHLPVSIEVGIIGQSSQENNHKNSDKYSIPNYAWNNNDFLQLYNNRLNTNFNFHNFTNDNYDEELIKVY
TVITKSASEALNQYLSMKTPSLYSKSWWTPELSRSKNVLSFYFKKWRETGFVKNLNSQIFIRYRMARKNFRNAVKNAQNK
NLYKEYIKIETLKNTNPKYFWKTFRNIKKDANSKLYIINNKKDKDSITKEFAYSFENRLNSKAITYTSTNLKIPPCTKFD
EVIISDENIKTVISRLKLNKSKDAFGISAEHLKNASCEALTEWLRKFFNFSINHGQTPKSMSTSLIIPLTKSYKKSLTDP
NNYRGISIIPIFTKLIEYLILLICPEIKETHPLQFGFTKNSSTLHAEFVISETIKHYNNNNSPVYLCSLDAEKAFDSCNW
DILFERLYNDKKLPLYIVNTISSLYYESSASVSYLDCKSYPFYLTQGVRQGSILSPHLYNIYTQNLLETLQNESVVGTSI
NGNYTGVVAYADDIILLSSTLSGLQKLINICNMYTHKNCIKLNADKTEFLLTGKKQIKNCTITLNHQQIKLHDKLSHLGF
TWDTKSSPFASLNKSNIDHRISNFRTVIQTLIQSGIRFAHPNSIVQLYKTLAVPTLTYGLELCEHKKMLMQKLDIVGRNA
LKSLLDVSKHSKNYIHTLFFIEDISIIIQQNKLNLFIRLMNNKMTYDIIRSQLKNKTAPQHFLDSIKGLCNNHELNLETI
MESKKKIKIVGLKNLIPETDLQSLKCAVEYWNLKEQRTIFKDILEKHIPR
>CR1-58_HM_pol#LINE/L2-Hydra 1558-4650   [Hydra magnipapillata]
MDPSTIREXNKSSTTFDICTFNCQGLKSNIDFTKSLIQSYDITFLCEHWISKLEYSVIRDISNNTHSIYFHQSNKHEKGR
PFGGNAFFIRKNKFQNIRVIYEDDHILAINFEKNDLNIIVIGLYLSSSRNSLSSLEEYKGQLDTVKGLIDSYEGNGNIIL
AGDFQSFPHQMYDLFERSNSKRNSYSVHLSEFLKTNQLELVDVTKGSGPNYTYRHQTLPNSSYIDHFAVSKYTSFINLKC
IVHPECSNNLSDHLPLSISVEVKYTECNTIELAEDTNIPSYAWNDSNFINSYNVHLTNRFNNLNFTNDYEYDLLQIYKKI
TDSAQIAFKETLKNKKQCLYSKSWWTPELSRSKTILSIHFKKWRDSGFSKELNSVSFNRYQMARKNFRKAVKSAQNNKIC
AQYIKIEKLKNTKPKNFWNAFRCLNKDVNSRLFTINNKKDKESITSEFANHFERVLNTPKITHRKENHRRIPPCTKHDDV
TITEENIIGAISNLKLKKSPDSFGISAEHLKYAKCDTLTKWLIKFFNYSINYGSTPISMSTSTIVPLVKSYKKSLDSPSN
YRGISIIPIFTKVLEYLILIICPDIRDTHSLQFGFNANSSTLHAEFLISETIKHYNSNHSPVYLCSLDAEKAFDSCNWNI
LFEKLYFDKKLPLCIVNTISSLYNNSSATVSYQGCKSNSFPLNQGVRQGSILSPHLYNIYTESLLETIKNQGIVGTSING
NFTGVVAYADDIILLSSTLSGLKKLIKTCNIYSNLNCIKLNAEKTEFLISGKAQIQTNTITISGNKKNLQNKLRHLGFTW
DTKHSVFASLGYSNVDEKISNFRAVVQTLIQSGIRFAHPSSISYIYKSLAVPTLTYGMELCENNPGLMKKLDIIGRSALK
SFLNVSKHSKNYMNSLFKIQEISKSVQQNKLNLFLRLLNNETTADIIFSQLQHPLFQHSFVSDIQELCHLQILNFQNLIQ
NKKKVKIPLSKSKIPSEVERNLKYAIECWNAKEQRGVFKQILEENVFKRKSSEITFLFFSFYLVNWVLNK
>LOA-3_DPer_gag#LINE/LOA 484-1929  [Drosophila persimilis]
MPNNKHIKTNKANTAKELGTPLKVPEGQANPSAPAPGKPGPKKTGKETESVHRLQAAAAARGGPKSQSGPSKSGGSKGEA
DTGVAAKQSVIAAGKRTGTEEPLGAPAGSVSAPRGGKPSYQDRRRAAFILSNEDPNFKASAEGKEQRLWACSILPLFQPA
KAGKGAAKAPNKRQRSAEDPANQPGQAQQAKRVKTHLTNRSFAEVARGKTLIGVLDRGAEDGHVPRDKWHLVENELQDRF
LLELEENGGPPPKCEDAGWHQGKVKAIACQDARSAALYMKAVAALKEVYPGAKLEAVKWEDVPSRPRARAWVSAKPAEPE
KILRLLQVCNPHLPTADWKVAKVEDIQGQRRQIILVLNEESIDLLAKSDGVVDYGYKKVTISTYKSDRKGRQAEVEPDPE
LPEIPKEGASCEEDNPASDAASLMSDDILDDYAFDESDLARGLSHIIVGEEPESPDSDPEVTMVEASLRNVVDAPADKPP
PL
>LOA-7_CQ#LINE/LOA 2-2646 via tfasty with LOA_Ele6_pol, 1 frameshift. [Culex quinquefasciatus]
RKNWRFYCEKVEKTPDAAKLQKVLSKDHSNGLGSLKKNDGSFSKSDEETLEIMMETHFPGSILAANEDLGTKSVDYGRDT
TMEKSFVPKSIFTRAKVAWAVSCFEPFKSPGRDGIFPALIQKGGGKLIECLTNIFKSSLELGHIPKIWSQTRVVFIPKAG
KRDKTAPKSFRPISLTSTMLKVMEKIIDEYIKSKFLHTKPLSRFQFAYQQNKSTVTALNELVSRLGKNMSAKEIALAAFL
DIEGAFDNASYKSIKKNMEKRGFEHCITRWVMAMLDSREVFAELGGSSVTVKTTRGCPQGGVLSPLLWSLVVDDLLKKLS
ELGFEVIGFADDVVILVRGKFEEIITERMQYALNCTFEWCKNEGLNINPKKTVVVPFTRKRKILLKTLTLDGSALEFSKN
VKYLGITLDAKLNWNLHLDQAVQKATTALWVSRKTFGMKWGLKPKMISWIYSAIIRPRLTYAALVWWPKTKQKTAQKKLE
KLQRLICISITGAMRSTPTNALNAALHLLPLYQYVQMEAGKSALRLRRNENLFKNCKEHLGILKELNIDPHVFMNEDWME
YTLNLDITYKVILTDRQVWESGGPSLPPGAIIFYTDGSKMGNKTGAGITGPGLSISAPMGRWTTVFLAEIYAILECASAC
LKRNYRYSTICIFSDSQAALNALNSSKCQSRLVWECVILLKKLGNKNRVFLYWVPGHCGVEGNEKADLLARKGSDDLFVG
PEPFCGVSKCVLKMEITKWENSMIQQNWIASHSAKQSKLFITPSKQKTSRILGLNKRSLNIYIGLITGHCPSRYHLKKLT
RSQTDICRLCDCEVETSRHLLCECGALIAKRIKFFNKGILTPSEIYSENPTSVVDFILEAMPNWGISHPQSVAVTLNGDL
SP
>Loa-3_DTa_pol#LINE/LOA 1670-5266  [Drosophila takahashii]
MVQYLQINLHHSKAASAALLTRLETGKIDIVLIQEPWIVGDNICGLSTPTYKLFHIKGKGKPRTCILTKTHFNTFLIPQF
SEGDLTTVRLELNSHTHHTISSFYLAHDQEGPLPNIITQQLIHTHSSKELILGGDANSHHTQWGSTNTNERGELLYDYLL
QSNLFICNKGNDPTFITRNRREVLDITLISDTLLNHLEEWKVGAEHSFSDHRYVEFTISLECPPPESIRNLRRTNWGYYK
KLLDRNLNTPPTRVLDSHELENLVNTFTDICGEAIKKACPSRTVKTKHKPPWWNTTLAALKSDCRSHFNRAKYSNSEASW
NTYHTKLSHYKKEIRASKRREWANFCSSIESTAEASRLRRILAKSPVTVGYLKTNEDTWTGNSQETLELLLDTHFPNNTQ
AVEDLHLVESLDEQSIDNISNPERIKWAINSFKPFKSPGPDGFFPAQLQRTIDTTLPWLTVIFHGCLALNHIPSRWLDIK
VIFIPKAGKPSHTSPKDFRPISLSSFLLKTLERLIDTHIRLTTNPSLLSNAQHAYRKGRSTDTALHSLVSYIERGFHNKE
YSLAAFLDIEGAFNNVTPTAITGAMTELGIERPIVGLIHTILTSRVVYSTMGSAQSTRNVSRGTPQGGVLSPLLWVIVVN
KLLSLLEEAGTKVVAYADDVVILMQGKFPQTLCNLMETALSSLSRWTARCGLGVNPEKTELVLFTRKYKIPSLTLPKLLQ
TRLTLSNQAKYLGVILDKKLLWAENIADRTRKAAIALFACKKAIGRKWGFSPVIVHWLYTAIVRPILLYGIIVWWHSLEK
NCNLKNLHKIQRSAELCISGALRTTATEALNTILDLEPLDLLAKSWASATALRLREASAWSTGSSGHSSILTNQRYIPHR
TDYVPPIVNFEKTYKVLIPTRTEWDHLPHQIENAVNIYTDGSKLNLQTGGGVFSPELDIKVSFRLPDHCSVFQAEVMAIQ
EAMSYLDTTKHCNTDIFIFSDSQAALRALDSYSTNSLTISECRKSLNEMATHLRISLIWVPGHRNIEGNCIADELARQGT
TTDILRDKDTVGMPIATCKLLLKQRLYTLSNNRWNTISTCHTSRLTWGNYNPKRTKTLLQCNRADISTLINALTGHCLLG
THARRLGLSSYDYCRSCKQIEEEENIEHLLCFCPAHNLKRFQTLGSYTLPNLAAIQGTSIPKLLCFLKRTNWFEKPNNP
>L2B-3_CQ_pol#LINE/L2 899-3718  [Culex quinquefasciatus]
QPKQCGEILYLNIAGIKSHLDELKLMMQNTKPKIVFLTETHLTEKHDLDEFEIQNYRCSCCLSRSAHTGGVMVYVDDRLE
YEIVSNTVAGDNWFLAIDVKSTTLNGIYGGIYHSPSSSDAGFIDSFESWLRTVFQDCRTNLLVGDFNIRWNEPGYARELK
NVTEALGMKQIVSEPTRVGPSSSTIIDLVFTNLEGVEARVTEELKITDHETICIHVGETTINLPEQKKSYVSWKRYTKER
LQAALRAKLRRADAGVTVGEAAQTFGSTLATAVAELTDLCSNDRKVSNAWYGEQLRNLKTERDDAYRTFKHTKRLDDWNL
YKVLRNRYVRGLRSSKNLAVEEEIRSCHGNPKKLWRSLKSLIRPGGEPPMEIVFEGARSERETAERLNQFFVKSVETIHR
NIPPAQVEPAVVPAEVRVNEDGSEDLLTELQPITLTKLKETVYSLKDCAGVDSVTKRVMTDSFDVVGEQLLAIVNRSLES
GEFPQPWKRTLVIPIPKVPKSTRPEDHRPINILPLYEKVLETIVKEQLLAFVDRTKVLLEEQSGFRKHHSCESALNLLLL
KWKQAIEEGKIVLSVFVDLKRAFETIDRTKLKAVLRRYGVRGSALKWFSSYLDSRTQVTRYNGSTSAATAVDLGVPQGSV
LGPLLFILYINDLKQALRRVQVNLFADDTVLFLTGTSFEECFNVMNTELASFTEWLRWKKLQLNVSKTKCMIVTTRPSDG
VSRAVRIDGEEIERVETIKYLGVMLDEKLNFNDHIDYTIRKAARKFGVLCRINRYLTTEAKIDVYKSLIAPHFDYCASIL
FLATRQQLKRMQVLQSKVMRLILXCDRLTPRQNMLDCLQWMSVRQRIEYNTLIFVFRVTKGMAPKYLTGTVVYGRDIHQH
DTRGADNLRLQMCRKACTQNSLFYKGYSMYNQLPEAAKNTRNINEFKNLCKNFVRQRPME
>L2-2_Cis_pol#LINE/L2 947-4165 [Ciona savignyi]
YSIYKIMADKIISQQCLMCQECCTDNQDSICCDQCNNWMHLSCTSLTKSQFESLGCSQDPYFCSLCFHNTQSQNVSPNNN
VNKSFSESNSLHACEDDDDNLSFNGNSLYYGQDRLNGLMMSCASHVSIFHFNIRSLAKNKYRIEEFITSLPTLPYFIGIT
ETKISKLSLNNYEIDQYNFIHNDSLTHAGGVGLYIRNDISYLIRSDLELEIDHCESLWIEVKIKKISSLIIGVIYRHPCY
NFQNFQNKLCETLSSTKVINKDYLLCGDFNINLLSSNRQESVANFEQSLKSIGCTNIITQATRFSYNSIPSLLDHIYTNI
LTELTGGICLFDASDHLPTFCIIYGIQISYTNSSKYVKIRCMKNFVVEQFLNELQNIMSVATSEKNNTVDFLFERFVNNF
QYVLNKHAPLCNLSRKQKKNLYKPWITKGILKSIKHKNCLFRACYKHNDIEQILYYKKYTNHLTRIRKLSKQQYYFNIFH
ENRYNPGKTWKTINEIIAHRNVSKHSISEILLDNGTKTDEPEKVCEVLNNHFASIGKTMASTISDPSVKFSSFVHSSVHS
FYLEPTTSEEVSQCISNLKINNSCGPDNISSKFVKMANSIISPILAELFNKSMDQGAYPKCLKISQIIPIPKCRSPKTVN
DYRPISLLPTFSKIFEKIIHFRLYYYFNKYDLLTPCQYGFRTNHSTELAVTSIHEQMLSNLDSGKITCSIFLDLQKAFDT
IDHSILLQKLFLYGIRGVQNDLFKSYLSGRLQCTTVGNIRSLYKSVDCGVPQGSVLGPLLFSIYVNDLPTSSNFQTTLFA
DDTNLHMCDFSFSNLQYRVNLEVNKVDVWLRANRLSLNHSKTVFMLIHNHKNNYQFNVVINKKPVQQTNNIRYLGVILDH
KLKWNMHIMNLRDKLSRVCGVFCKLRRYVKQNTLRCVYFSLFHSHLQYSIINWGRANTSAIHPLEMLQNRALRHILFRSN
RDHASPLYNELKIMKXHDIFIHEIGKFVYKFSNKSLPSYFNHFFTPLDAMHKHATRQKDIGTFYHPRVRTNYGKSMLQYL
GPCVWGEIPNDYKCMSFNLFKLRFKQYLIQMY
>L2-1_NVi_pol#LINE/L2 389-3237 via tfasty with L2_Plat1i_pol, 1 frameshift and 2 stopcodons. Bit of N-term missing. L2-3_NVi_pol near identical over large parts, but containing foreign insertions. [Nasonia vitripennis]
HNHHQXHPPRLHLSLSEGLRVCHFNANSLTGHIEMIRLFLSTRSPFHVIAVTETWLNDKITSIPSLDDYILYRRDRNRNG
GGVALYIHKSLTVSVISSSDGEWSGKPGKPEYLFCEVSAKGVSPIFVGVVYRPPHAPFFQGSNFIDQLTTHMHNYSTKVI
MGDFNSDQLSSSEDANFIRAFIDENSLSSVPYGATHHKQGSDTWLDLCLIDEQDRLLSRWKTDTPFINGHDLITATLDVQ
IPRYVPNTYSYRNYKGISAEKLRDFLSACDWSSLTTSSLDECISILNANLTNAINHLAPLRTVTPRRKRHPWFTTALRDL
VSERDGLYRRFRDSRLDSDLRIYRLARDDAHRQVEEARLNYYYSRLSTLTDVAEIWRELEKLGISASKAPSPSRFSTDEL
NKHFSSISNDPPAPAVEDYLLTLESLDLPEHFKFSTITESDVLAAVSHFDTQARGSDGIPQVVISKALPVLAPLLCQIFN
LSLSESRFPSAWKLSLVRALNKVSSPTALTDYRPISLLCFLSKALEWLVHRQVSEYLESRLFLDNLQTGFRTGHSTQSGL
IKLTDDVRVGINKKKVTLLLFDFSKAFDTVCHVRLLRKLSTFGFSKQVIRWFASYLTGREQAVVGDNSERSSSRPLNIGV
PQGSVLGPLLFALYINDIGFCLDSDVSHLIYADDLQIYSQCHLEELDSxSNKMSANAERIMGWAAQNRLKLNVIKTKAIV
LGSPYYINALPSVANTFINIGGARVNYESSVRNLGLVLDSKLTWKEHVTQMCKRAHSLMYRLYFFRKSTNLRLRKHLVQA
LLFSIIDYCSLVYCDLTQELDTKLQRLVNAGIRYIYGVRRDKHISPYRRELQWLTTAGRRKxLFNSAVPSYVLAYFDFRV
ALRPVRGEVTPLDIPTFATETLRNSFHISASYLWNDLPSHIRNTTSITSFEKLAKEYFFELENTSCTHTH
>L2-3_Cis_gag#LINE/L2 3-896 [Ciona savignyi]
FYLNKISDFTLMLNLMNKIDLSKKMNNNTAGNSGKEKTGKRSTSALTSSVELVLLEKLNDFQQSSEARFLTVINDLQEIK
ASQQFLEARYEEIKIEISDHNKQLKKLKNENGNLKERIRELENKSLENSNTIDALEQYGRRECLEFHGISSHADESTDDL
VVATVRKLGLSINKSEISVSHRLAKPSHDRPRPPIIAKFXSRKVRDNIYGNRSKLRQVNENLPTGQARIYINESLTKSNK
DRFMKCRTYCKANKIRYIWTRNGTTFIKEDDGSSTICIKSDKDLQHLLKQVPLLKTT
>L2_pol#LINE/L2 216-3170 [Mammalia]
MPFIPVYVSHHKKPKTPRSSLIPQTLIPIXLCTSPFLTPSPIPPQLLKPFHCALWNSRSVISKIPRILNLFSERSLHLLA
LTETWLSPEDTASPAAFSSGGRFLSHXPRTTGPGGGVGVLLAPHCCFQTILPPSSLKHPSFESHVIRLHHPLPLLVAVIY
XPPGHSPSFLEDFSSWLTVTLSNTTPVXILGDFNIHIDDPSNTLASQFLDLLSSNDLVLHPTSATHSHGHTLDLVITNNC
NPSIISISSIPLSDHHLLSFQLTPSSTLTPTILRPHRDLQSIDPTTFSLSLTPLMSSLPSLPSLNSMVNHYNHSLAYTLN
SLAPLSLRXTRLAKPQPWLNPTLRLLRACTRAAERGWRKTHNHADWSRFKFMTTNLKWALNAARQSYYISLVHSLSHSPR
XLFHTFSSLLKPPTPPPLSSLSADDLASYFTEKIEAIRRELPXTPTTTSTHLPASVPTYSAFLPVTTDELSVLLSKANPS
TCALDPIPSRLLKDIAPAILPSLSCIINFSLSTGSFPSAYKHAVISPIFKKQKFSLDPTSPSSYRPISLLPFTAKLLKRV
VYTRCLQFLSSHSLLNPLQSGFRPHHSTETALVKVTNDLHVAKSNGQFSVLILLDLSAAFDTVDHSLLLETLSSLGFQDT
TLSWFSSYLTGRSFSVSFAGSSSSPRPLNVGVPQGSVLGPLLFSIYTHSLGDLIQSHGFKYHLYADDSQIYISSPDLSPE
LQTRISNCLLDISTWMSNRHLKLNMSKTELLIFPLKPAPPTVFPISVNGNSILPVAQAKNLGVILDSSLSLTPHIQSISK
SCWLYLQNISRIRPLLTTSTATTLVQATIISRLDYCNSLLTGLPASTLAPLQSILNTAARVILLKHKSDHVTPLLKTLQW
LPISLRVKAKVLTVAYKALHDLVPRYLSDLISYHSPPRSLRSSHTGLLAVPRTRQARSCLRAFALAVPSAWNALPPDIHV
AXSXTSFRSXLKCHLLREAFPDHPI
>L2-7_NVi_pol#LINE/L2 1538-4393 via tfasty with L2-6_NVi_pol, 4 frameshifts. [Nasonia vitripennis]
RPASGPNSSGPLDSINIGHINVNRLASHFALFEEHCTTSHFDVIGVTETFLSVADPDDQLTLSGFNFFRVDREGQAGGGV
AFYARDFFKVKILAHSGGNIPEFVIAELIYNNFKLLFAVVYRRPNSAHPSHFFQCLAPLLPHYLNAVVTGDFNADMCTLN
ANSNNLRSSLESLSLYLVPSEPTHHVFRYDRPPSHTWLDLFIVNCRDSVVALRKSDSPFIAGHDFIELTIRAAKPPACEK
VIMCRNLKKVDPAVISAALCDILAPLANPFQHGQNRFLTASPTLPVTLGPCPADTDVFQRHITSALISTYDAVAPLRRIT
LSSRRKPWVSPAIKALMKRRDAAHGLARSSGIHSDFERFRALRSEVSNLLDTAKNEYLAGRLVSAPDSNSKWRELRSMYI
TSPRLPSPLLYFDADVLNRHYAAIVNRHPPLSEEVFQVLFDSPLAEPAADRVFDLRPVTLAEVRDSVLNASSKASGVDGI
SVPMIKAALPGVLDHLTDLVNACILNGTFPTDWKKALIVPLAKSKTLTSPSDTRPIAQLPELSKVLERLVHSQLTSYLEA
HRLLDPRQAGFRAGHSTQTALLGVLDDIRRGIDDRKLTILILFDFSKAFDSIPHAKLLAKLKAMGSESDSLRFFFNYLAD
RFQAVIDKGGTASDWLRASSGVPQGSVLGPLLFAVYINDLPRVLQFSRHMIFADDTQIYHQCYPNELPSALAAVQANLNK
CKAMILGSQFYVSRVDLPTLPKITVGGVRLDYVSEACNLGVWLTPSLDWQLHTTKVLRKIYGALYRPKDIRKDLVESLVF
PCFDYACAVYHDVDVTRNQKLQRAQNACTRFVFGISRSAPMLHYRLELGWLSVMRRREFLLGSLAYNVLAFENPIYLASG
FKRITLDLSVRRSERNPPQALLYSAPRTEALKQSFAITASSLLNSLHQAEFSPDKIGAFKRSMRAALLERDRRDWADRVT
NKGLTI
>Tx1-8_BF_pol#LINE/L1-Tx1 1372-5139  [Branchiostoma floridae]
MSKVECRISSYNCNGLGDFHKRMGLFTWLKDKPYHLYCLQETHTTVRDEKRWQNEWGGQIYFSHGTSNQRGVAILIKSSA
SVQVHQVKTDESGRWIVLDIEVDNLHFCLANLYAPNDDCPSFFKELEEAIDTLEISNEHLVVVGDFNTVQNSAMDRSGAR
LRNYHPNALEAISELKGKFDLYDVWRFRNPNVVRYTWRRGLYASRLDYFLISFSLLNRVTKCSIADKLRSDHNLITLSFV
TADFPRGPGYWQFNQSLLDDKLFLVQTKQIMSEFFENNVNTANPQVVWDAAKCFFRGHCIKFSSWRKKQYLMKEKELIDE
INMLQSQIDSAASPPPAQLEELNHKQKLLESLYNERLNGILLRSKSRWMELGERCTKYFINLIHRNYTRKNIQRLKRPSG
EVTCNPKDILSDQVNFYSALYSFEDIPMPLSDVNCDGFFPEDYDKRLSDEQQQLCEGLVSEEELKNAIYSFQAGKSPGLD
GIPVEVYKNFFDVFKKPMLTCFNYSFVNGYLSETQRKGLISLLLKKDSKGIDKDPTAMGNWRPLTLLGCDTRILSKCISL
RIKHVITDIIGEDQTGFIKDRYIGDNIRRLLDTIEHYDQENKPGLIFVADFKKAFDSLRWDFMFKCLEFFNFGPQLIKWV
KVLYKKTASCVINNGYISDPFNLYRGVRQGCPLSPYLFLVAVEVLAIKIRSNHSIRGLRIYEKTTKISQYADDSNFPFEP
KLESFYALLSDLERFSNISGLSLNVDKCKILRLGPLKLSNFRLPTHLPIQWVDGDVDLLGINIPVDLNLITNVNFEPRME
RLDRLLRPMKNKYLSLYGKIVIINTLVVPQFTNLFQVLPSPNDSFFKEYEKKIFSFIWDDGPERVARKVLYNEFENGGLN
LKNLRAFNTSIKASWVPKLYSHPEWFSSWVTVFHPQLSHSLFPFYQLSSGKNLCLKGFFSEVFMAWFKFQPTTPANIRQQ
VICLNSNIIIDGKTVCMTSFLNRNIYFINDLLSPNGNFMSYDEFSINYPNACDQHRYLQLISAIPGKWKKILSTEKRKDL
VCLPFQKNYKWLRNIKINKSMYIYFLTSMNEVSVAHNTRLSWFYYFDKDIPWREVFTNLYRCTIDPGTRYFQYRLINKFL
PCNRILHIWKLVDSNSCSFCHDDVESYIHVFWECPHVVPFWNEVESWLQVQTSIDCNLNPFIIIFGDTCQDTPPLKNLII
LLGKVFIFRCRRLKTINFQAFKKLISTFEKTERLIASRRGKLEKHRGKWGTLCLI
>Tx1-3_BF_gag#LINE/L1-Tx1 448-1302  [Branchiostoma floridae]
MSRKKAITQDDSELVSMSTLKDLLDNQKEVFNNMIELQQKNFRSFMESTMECHNKRIDNLIREVQEIKVSLQYSQKDIED
IQTNSKQQEQRIKETEAKILQLKTDITSNHNKTDYLENQTRRNNILIDGITDVKEESWEECEQKVRSLLKDKLQIDPKKI
EIERAHRNGRFQPDARPRSIVAKMLRFKDKETILQRARYLKGSHIFINEDFSEAVRQKRKELIPEMKAARERGNVAYLRY
DRLIVHPPRPTTRSTTQRHSNNEGTDTGRRRQDLRSTRATFGAV
>Tx1-16_BF_pol#LINE/L1-Tx1 1352-5241 via tfasty with L1Ci-C_pol, 1 frameshift. [Branchiostoma floridae]
MMVPGQEFSLASFNCRGLGNNAKRMETFTFLKDKPHSVICLQETHSTFEKENQWTTDWGSQILFNHGTNNSCGVLIMFQK
NFSYQIHEIRKDYGRYILIDLECGNFRCCLCNIYAQNKDDEGFFEEIQKNISEMEACNENIILSGDFNTVLDTKKDRAGQ
HFVNYHPKATQAIRELSATFDLVDVWRLNNPETRRYTWRRQKQASRLDYFLVSFSLLPKVTKVAIAESFKSDHRLIFLNV
VPGDLKHGPGYWKFDSTLLNDNMFLKETRKFIEEFFLFNKGSAEPRVVWDTFKCAFRGHCIKYTSFKKKQIFEKENRLLD
EIRRLQNDIDSLGSPPLCLLEELEQKERVLETLYEEKRQKIMLHSRATWMKLGEKPTKYFFSLLNRNKTKKNVTKIVLQD
DKFVTNPSDILCEEVKFYSSLYSFEDVKKPLKEEKEYNMFFVEGNIPTLTKQQSEICEGRIKVKELWDSISTFKKGKSPR
VDGITVEVYKEFFYLLKQPMLDCFNKVYDLGQLSETQKVGIISLLLKQDATGTDKNPVYLKNWRPLTLLPCDTRILSKCI
ALRIKKVISSIIHMDQTGFLSGRSISDNIRKVLEIIEFCEKDNIEGLIFITDFEKAFDKIRIDFVLEALKKFGFGKSLLQ
WVTIMYTMITSRISNQGYLSEPFRLLRGLRQGCPLSPYLFVLSVELLSIRVRANENIEGLVCRKEPCKLSQFADDTNFFL
KPVLTTLETLCLELKNFSNISGLVPNFDKCIILRMGPLKDTGFQLPCTFPVKWSDGPADLLGIHIPQDMNTLISDNFSRK
LQKVDRILQPWKGKTLTLYGKVTLINTLVVSQFTYLFMSLPSPDAEFFQTYEKKVFKFLWSGGPERVKRNIVYNMYEYGG
LKLINLEAFNAALKAAWVPRMYLNKSWFCRKMLNHCIHFNYDIFPFLQLTEAHFHNVVSKHSYLSTFFEEVMLAWLKAQK
KPLDNMSEYLRQFLWFNSNILIDRLPFFWEAFSQRGILFVNDLLNTDGYFMTYRSFIGKYGRICDELKFIQLLSSIPFKW
KQSIQGIPLCETAIMPVTKYSKWIKGLKINKELYRFYLVERKCVDFHCKAQEYWTELFNDQIQWDVVYSLTYKTTIDSYL
RSFQFKLLHNFLALKNKLYKWKLSENTLCSYCKTEEETPVHIFCQCSFLVKFWGDVENWIRKHMNMVFRFTSRIILFGSL
GYPIILNTLLLIAKVYIFKCRHLKIPTIDGFLAYVHYYYKVEYIIAQNLQKIEKHLLKWDILVMKMQIVLPGLGCFLYIH
FVLLCLFSKMNKDYVKK
>Tx1_XT_gag#LINE/L1-Tx1 555-2867  [Xenopus (silurana) tropicalis]
MIKKMPQGTKGKRPERPGYSSAAKQQSEPVSKNPSASTSAASANVTPAKTFAQAVAAGSSPSQVTTGAEQLTRKHGVRCL
MSGAHGIEAYIKAAAELVGPSAIVAASKMYGKAIIFARTLAAVHTLVQRGITVGGSYVPVEPLEGLGTRVVLSNVPPFLQ
DPILRPHLQALGELKSNISKIPLGCKESRLKHVLSFKRQVQLLLPRGQDSIEGSFGVLFEGVLYKIFYNTEEVRCFLCKE
MGHTRQSCPKRQIKTTANTCTPGTSCVTACPARTISAGPLKGTSPSLENSKEVVTQPTSTTSKPPPSSLKLSKSPACLAT
AAKEKRGNKFTTSPSGTAIPTTHQPSPVGVGAHKIVTSAGVGAVSDPSSLGGKEKKRKFKSNHLVPEEWALVVNDGAPPS
KGKKSSETSGPHVVTLSNPSFRLSQPVSDHTLSTPDSVRNNEVNGLESLEQGNMGFSTESGVQHLPPTHLEVLHMECKGT
PNETPAGWVVNVPEVLSFGDCKHTQFSVPQDIPLLEGENIGITPILESADKTVWGDDGAGVVDMKEDSMADSEKNNPVKS
AVHVEVSPPLPSTDPNVIAIRSDQEAVERAEADYRASKAPPVVEELIPSAAPDTSEGVAGEIEKAPEPXQVLQMMGASDP
IPATSRADILKAQVEERHYQSLSQEEPRDEDNIVEEGETGVANPSAPLIPAEELKRFLESNLGVKLDNKLRMALENWHDL
PLIIRSVRHYIGVIREAKNYGTAEYLRIIKFHKKCLSHLASVRAKALPNTQ
>TX1_FR2_pol#LINE/L1-Tx1 2-988  [Takifugu]
AAPRLKAALRRTRTXXLQHVVAAAGPDLTGAEAVGSLLGIRSAQAAEGVLRLWRNRLSARERRLLXDYGQGTEPDGDDPF
PEIRLAAHLGDLDGPLLRPXKTFSLHAVXKKTLYXNCVRVLNRRGLSNRSTSVWADRLGGDGARPCWRVLYKPPLKKRTG
DLQWRILHGAVALNALLSRMNTAVSDQCPFCSGRETVFHAYSECERLTVLFNVMKGVFNGFNETFSIRTFIFGAGYNKAA
RNKWQLLNFICGEAKMAIYISRKNKXAKTGDXEAASVWRCNVRCRLRLEFGFYKMINDLGQFRDIWCHKNVLCTVTEDHL
HFAHPLVG
>Tx1-3_AMi_pol#LINE/L1-Tx1 2553-6518 Tx1-1_Crp_pol near-identical. May be the same element. Tx1-8_AMi_pol very similar.[Crocodylidae]
MAATTIGTFNINGCRDPVKREAVLELLRQKRLAVAFLQETHSDRLNQLAWHAAWRGHLFLSHGTNLSAGVATLLSSQLQH
DTAVAREIVPGRLLTVRVTLAQHHLLLVNVYAPTDGQERVAFFETLAALLRDASEDDDLLLVGGDFNCTADTPLDRTGPE
PHLPSARKLQSVLETAGLVDVWRALHPDARQYTWARMSAGGLTMARLDRIYVTRHHLPLLRSGRIIPSGLSDHGLACCEL
SLPGRTCARAPYWCFNVSLLQDSYFRDCFANFWRGWEATRLNYSSWKLWWDVGKVQIRAFCQQYTQLATNELRRRIRELE
EDVVELEAALLAAGSDAVLRESLRFRRKCLRDLAESAARGARIRARCQELAETDAPTRFFFNLERRRAASKVLDHLKTPE
GRVITDPGEVREHAVAFYRDLFAAEPSCPEATRELHAGLPRLCALEASELEQELSLAELAAAAAGLASGKAPGLDGLPAE
FYKTFWPLLGPCLLRVFQESLADKVLPISCRRAVLTLLPKKGDLGCIKNWRPVSLLCADYKILAKALATRLRTVMASVTG
PEQSYCVPGRTIQDNLFLLRDLLTASELFGLDIGLISLDQEKAFDWVDHAYLFQTLEAFGFGPLFTGALRVLYQDTSSLL
KVNGVLCAPFPARRGIRQGCPLSGMLYALAIEPLLHALRRRLSGVALPSATGPSIAPPLRLSAYADDVTIFLNTQEDVEA
LTDCQRAYERASSARINWAKSDTLLLGAWITVTPPDLPGGLTWRREGLKVLGVFLGPSTFMARNWDGLEEGVEARLQRWR
WRLPSLSYRGRVLIANNLAAATLWHRCTVLDPPQDLLERLQRLLVDFFWDGRHWLPRAVLYLPVAEGGQSLVDLASKVAA
FRLQALQRLLYGEERLPWQQLACRFLQRVGALGFDRELFLLDLTLLNWAVLPAFYRGVVRAWQATFRLQPQARHLQFPQL
LREPLVHNPALRRPVPSLASASLTAVLIQARVLRLSHLLDPARSAWLSPEALTTRLGMRSVRSVGRLLRDIRAALPLEAA
ATLDDHLRAGQVPRAADVPSEVFPALPVTPAVAGELAGGPGTLLTLPVPPDSDTGCPFAFLSRRSLYAWVVHVRHAQVLA
GRPDTPWRRRLGPPDSPPAHPAWRTLYKPPTAKKTGDLQWRLLHGILATGTFASHFDPAASTACPFCPGGVEETLFHAFL
DCPRLRPLFVTLEPLLRALGRSLSETTYVCSYPYRAAEKGPVCLANFLLGQAKMAVLKSRRNRLAGTGSDDALRLFRLLV
QARLSLEFEYAVLRRAVPAFETRWALEGALCHVEDGRLKYAL
>Tx1-1_ADi_pol#LINE/L1-Tx1 1322-4429 fragment (C-terminal 230 AA or so missing) [Acropora digitifera]
SSPFALNDELVICSLNVRGLSNPLKRRETFRWLKMKKYGIFFLQEVHCTKEKESLWTSEWGFTASFSSFSSASAGVCILF
NNNFQFEIIRKFFDQEGRFIIIDMKIDNKILTLVNIYAPNNDNPTFFQNLIDRILSLECEEVIMGGDFNLVMDVQKDKNG
GNATTHRNSLKEVQNIANSLDLIDVWRTLNPDGKRFTWRRTKPEVHCRLDYFMISSSLTAAITNADILPGYKTDHSLITI
HLASSSNPRGPGFWKLNTSFLLDSEYIELIKKTIDEVAEEYRNNDDVDAILLWDTMKTQIRSSSLKYAREKKAKIKSKEN
TLESDISSLRKKLEEENPSDAVKGEIYKELDIKTLQLEKIAQYQTRGAILRSKARWYNEGEKNTKYFLNMQKRHFNKKTI
KQLQSDKKGAINTDDQILQEAKSFYQNLYSTLYDQPNLRNEDIFFPKNFTEGLDEQSKNECEGLLTDVECLESLKTMASN
KSPGTDGLPAEFYKVFWDYVKPFLLNALNCSYTNGHLSITQRRGLITLVPKKNKPANLLKNWRPITLLNCDYKIAAKSIA
NRIKKVLPKIINNDQTXFLKNRTIGENIRLIDSIIKYASTKQIPGLLLFIDFEKAFDSIEWPFIERTLKHFNFGASLLTW
FKLLYSNISSRIQNNGWSSEFFPLSRGVRQGCPLSPYLFILCAEVLANAVRKDENIRGINIANVECKLSQYADDTTMFLD
GSELSLLRTLLLLDNFAISSGLKINYEKTEALWVGSYKDRXFSIPSSKPITWARGKVYALGVLFSTSEINESSINFREKI
EKMKKIMSSWSARNLTLLGKIAIRKSLVVSQIVYLLSSLPSPPGVIKEINCLLYDFLWDSKGDKIKRTEMINEYNKGGLK
VIDLQRFNESLKIKWIKGYLDDNNKGKWKSFVNHYLEKHGGKLVFSANLKRQDTSLLNISDPFLAETVEYWSTLNYSEDN
LNFPSSQIWLNSLIRIDNKPFFYKSWFHAGVKDVKDLLNDSNYNFLSYTAFITKYNIKTNYLEYYKVVSALKHFRK
>L1-Tx1-1_DR_gag#LINE/L1-Tx1 8-1177 via tfasty with 34850481_Dre_gag, 2 stopcodons. [Danio]
MASLVDERTPSLSLRHGVKCMTEQGVKVEDVLIAVGEQIGCENIVSASRMNKAVVVFPKEELFVSQLIESGVIISGSFCP
VLPLVALTSKVIISNVPPFIPDEAIERELVRFGKIASPIKVISLGCKSPELKHVMSFXRQVFMFLNEPTLDISFRVMNEG
KSFMIYASTAGLKCYECGDFGHRQYFCPHKVQGNTNDDNGDVNELEGEKNQVKXTETETTIENDVVGKQQNEGNAIQRNV
MNDENQATVVQEVVDENDLSSETVTASASGLVKLNEKMEGPVEGLLEDEHKQDMMDDDDTFSQTSDFSEMGSQMEDSNFY
SLQEINEFLDDTFGRTVEVEDFFPDTDKFVKTVLRLRRTVGLDELSDKKRFRLGKFLTRIRKHKGSFSRK
>Tx1-1_BF_pol#LINE/L1-Tx1 1805-5539  [Branchiostoma floridae]
MVRFLSINVRGLRKRSVRRTVFQYLKTKQIDIVCLQETYITNDVKDAWTKEWGGKLYAHPCTSHSKGQIILIAENFDCNN
VEFINLSDRSIGVKFIHHGEKFVCFNVYAPNNVVSKKLFYKQVLTQLQEHCCDGEYFMLAGDFNTVLNRDLDNVAGKEHD
KAEVKCFNNLTDNLELLDIWRVFHSEDKDYTWSKRNPFTARRLDYLLINDFLFDKTTACEIISFPCSDHRAVVLDMSVTQ
FDKGPSYWKFNNSFLKDKVFVDRVNEIIGNIQEGLSDSVIEDKQLIWDICKSKIKTFSISYGKQKALEKRSKHNIIDEKL
ERLEKQLASDPKNLTLQQQVHNTKAEFEALALHEAHGAQIRSKVKWIEEGEKNTAYFLRLEKSRAIHNVITSLRTPDGHI
ITDQNKLLEQQVDYYRKLYSKNDDFDIESFDDFITDVNFPTLSDMQSKSCEGLFTMTECTSALRNMTNCSPGLDGLTTDF
YKVFWSRIGSMVLNSLNEGYTKNQLSSTQRKGVISLLFKGGEHQDLSRDQLSNWRPISITNTDYKIGAKILANRLQNIIS
HIVGPDQVGYIKGRSILNNIRAIDDIICFTRDSNVPGAILFLDYSKAFDTISKDLIIKVLEKFNFGSDFVQWVKVYTNNA
RSCINHCGHISEWFDLGRGVRQGCPLSSLLFILATELFALKVRQSSEIKGITLSGLGDSDVESRIFQYADDTELILGDKI
SIDRSLDIIRHFSVFSGLVLNKEKTVAMWLGPWRHCSEQASGLKWCTTAKCLGIVFSSACCASEVEVNWSKKYCKMKNIL
LSWASRNLSLIGKITVLKNLVASQLSYSFGALIPPDSFLKDVNLMFYRFIWKRDRVKRNVMVQDYSKGGLKMIDIRIMHK
CCLLRSIKKLLSGSETPTPTWKKIQLYYFKKLGPDLCILRHNCSAVHVSSKDSLLPLPLYYRKLILTWYEMKPVQNVNDI
EVNQVNWQLLWNNACISYKGNMLYFKKWIRRHILYVNDIVDDQGNFISFDDVKAIVGNDAHVLLQYHALINSIPKQWKGV
SRLDNEESPSIKLCGKDIRLLDSIFFKNFCIMQYQAVPVSQNFWEKRFPMYDFRSISWHVLWKSPFLTTKEPKLISLQWK
ILHNIYPTKILLHKMRIVENNKCIFCDIIEYIEHFFFDCKIVKPLWDYVESLFSYSISLTVHDIIFGYNPHMLNKFRYIN
ELLLVAKLSIVKYKSTVSSPNSLCQDAEIILKIFKSECILRNMI
>Tx1-2_BF_gag#LINE/L1-Tx1 450-1217  [Branchiostoma floridae]
MPPKRNTNTNAVMDEEVPVSVAFMKEMLEQQKIYYKDLLDQQEKNFRSFVQIITDSTNQRMDNLVREMQDLKNSLNFSQG
ELGDMKTVSGKNVDKIKQLEQDILTYNNEVTEIVNKVDYIENQSRRNNLIFDGIKDDKKETWEQSEVKVKEVLKTKLRLN
TDAIEIERAHRNGRPGDRPRPIVVKFSRFKDKQSILRHAKLLKGTSIYINEDYSERIRQKRKDLLPALRAARERGQVAHI
RYDKLVISDRGTANN
>Tx1-1_CQ_pol#LINE/L1-Tx1 1556-4801 [Culex quinquefasciatus]
MPFIRKFATVNLNAISSKLKLSLFKDFVWNNDLDFVFVQEVAVENFNFLSSHTALVNISVDGKGTGILVRKNIDYSNVIM
NSNGRITSAEIDGINFINIYAHSGSKFKKERDKLFTEDILIHLSETKENVLLGDFNCIIDKNDSNSSIKNVSNGLKNMTS
SLTLIDIELNHNKNRIFTFVRGNSKSRLDRIYASKEFAENVRSVETIAVAFSDHHSVVLKLEIGHQFMNFYGRGYWKINS
FLLNDPDIIDKFKKKYTELKLRNSYSNLNFWWNTVFKSNAKSFFKKENFLSNQQSAREKSFYYNCLNEIVQKQEQNIDCS
NELSVVKSKLMELEQRRLSKIKFKLKAETLHADEKLSLFQVTSFINRSSTSNLIKLRINDEITSDIKKLKNEIYHHYSQK
FQNQHVNNTDAETVLGYLNKKLEINDKIHLNRPIEIYEIENALKNASSRSSPGPDGLSYEFYSIFFDVVKDDLLNLFNDY
LVNEEYPPALFTAGVITLIPKVGDKYDLQNKRPISMLNTDYKLFTKILWNRIQPMMKNVLGAEQAACVEDNSCITNLRLL
RNILVKANKSKKFKGAILSLDLEKAFDRVDHDFLWKVLKKIDFPDEFINCLKKLYKNATSTVLFNGFLTEPFQILSSVRQ
GCPLSMALFAFYIEPLIRMIDQNINGVLIDNRFLKVVAYADDINIFVKNDSEFDIILQLVHYYSLYSKIKLNLFKSQFLR
FNSCMIGPQQIKEVDDLKILGVHFSQSFDKTIDQNYNGIIKFINISLLQQYSRRLNLFQKVYVLNTYILSKLWYVAQVFP
PDNKHLASLRSICGKFLWKGHFYKVERNELYLPVLKGGIALLDVECKTKSLFIKNILFGKSDELDTFMINQLVNKNLTRN
TREWLQEAEVLKNENHLNTSKKLYDYFIESKKIEIKKQKENPHLQWNTLFENTNKNFLSTTAKSYLFMASRDIIPCNSKL
FRHGVKGTESPFCELCGAQDTVEHRFKDCVHSKIIWTWLNNIVINKLKLKVKDAEEVLWCDFNDQNVKLKAALWLTVESL
AYCLQTFGEGTLDELKSRLCESRWNSREIFKKHFKHFLNVF
>CR1-1_AG_gag#LINE/L2 425-1771 [Anopheles genus]
MECLKCSAVVGTSDDPIICSGSCGFIFHRRCITPTLNKPAVKLINENRNVVYMCDICLDQSAGLVHMDTDATKSNDLLAQ
TLRDLEANVSVWISSALERGIETLKTELCAQVERKLETTLRETLSAIEASKMSKAALRATSDTPQTSKTVQDVNLETWAT
VTKKRKRTNSGDSNVQTIINRFDEGNNKVTPKIKKINDVKEPMGKNKENNKTLVIVPKVVQSCDRPRADLSARLDPRKQQ
LSEFRNGRDGQVYAQCPALANLDSIRKEVEDILGDDYSTSLPMARVKIIGMSEKYSSSDLVDLLKSQNEGIPWKQENVIG
MFESKIYKYQIHNVVLEIDHETDKCLAKLDKINIGFDRCKISRSIHVMRCFKCGQFSHKSTDCQNKEACSKCSGEHRTSD
CTSSILKCVNCVLANTSRNLKLQVQHAANSYECPLFKKQVERRMQLSQ
>CR1-22_SP_pol#LINE/L2 2-1666 Fragment [Strongylocentrotus purpuratus]
IVNEFNDFFVNIGPNLADELPNTDVAYGDFLGQNIEQSLFWKPITAVEIKSQVLLLDTKKACGHDNMPVQLIRDSAPYIS
HPLAYIFNLSLETGKVPDEIKIAKVTPLHKKGPREDPGNYRPISVLPVIGKVLEKLINIRLIQFLEKNDIFYYHQYGFRK
KYSTKLSLINLINSTLKSIDQGKVTLGMFIDFKKAFDTINHNILLGKLSSYGIRGLPLEWVKDYLSNRFQFVQCGQTLSE
RKKIRCGVPQGSVLGPTLFLIYINDLPTVTDYFNFRLFADDSNLFHTFSADQGEIDVNEVNNNIQKIHKWCTANKLTINS
MKTNFMLICSRRKKIGINGKLKIAGEEIKEVDVATFVGVHIDRHLSWKSHIRFVNQCIRKKVGVLFRLRHFVPSRTLILL
YKAFIQPHISYGIEVWGSTYKTSLRSILYSQKMAVRAITFSEWRTPSDPLFKRLRILNVYNLHDLSISTFMFDLVNGNLP
HILIEYCDIIEHSYSTRQKEGGQLRLPKLRTTQGQFSLSFVGSEFWNRLPVDVRLTRSRNRFRNSVTSHLLNKS
>CR1-21_SP_gag#LINE/L2 190-951  [Strongylocentrotus purpuratus]
MAGQGPLTRKRSEGLSQDSLDPDFSNMSTMLKKLFCEDEFISALERCVEKILAKRLQANEDRLDRQEGELMELRNQLDKK
EAEVQSLSLSMNKLSEEVDMFNMRANDLEQYSRRNSVRIFGVPESKGEVTDQLVIKAVSDHLPCEISPSDIDRSHRSGKP
RPDAKKPRPILVKFTQYKKKAAMMKDRRRLKGSGISIQEDLTQTNHQILMKLVNHPKVEAAWSIDGRIMAALKTSEEGIS
MKRAFSSLRQVSTL
>CR1-34-DR_pol#LINE/L2 3-3398  [Danio rerio]
MKMAPVFLSACRRLVLVYGSFILLFFLLNGVSSLHKYDREFLLSIRNFVTIRGYDSNGRRPPDPTFQTRLPVNIGCIPDC
LLNRKKRYRKRGKRGGVSVRLRRLTLPGASTSHLELSAVEGVGCELLSSRRHWPVSCEVRSSFLRYIIPDYSETMLHSRT
VPLKFRNGGINALNLKALEYVPNPTHSSDTLSNPLNVESLRMALINARSISNKTFLLNDFISTRDLDILCITETWLSAGD
SDCLLEVSPTDFNFLSTPRLSGRGGGVATIFKNIMKCRSLAVQDYSSFELQLVKIDGCVPIVCALIYRPPKYNKMFIQEF
SEFLTTIVPRFEKILILGDFNLHICCPKEPMVKEFLHIIDSFNLSQSVSKPTHKFGHTLDLVLSLGISITNIDIEEGYLS
DHNPVVFNIQIPSPFLNSKPPDRRARCLNPSTASDFTKAYSLLPSLPFGLEINESMSLFNSTCNEIMELCAPLKILKPKA
KQQPWLNSDTRSIRQLWRKAERIWKKTKLQVHYEILKDSMIKYQKAVKAAKAEYFANLIKKAPNNPRVLFKTINLALNTE
TTSGLAICQTTCEKFLQFFISKIEALRAGILRQDAFLDSTIPPSLAHFLDEFKPITLHDLVDLVLHMKPSHCSLDIIPPH
LFIQVLEVVGLDLLSIVNSSLLSGVVPSCFKHAVVQPLLKKPNLDSSDLKNYRPISKLSFQSKILERVVFQQLSSHLIGN
DILDKFQSGFRTRHSTETALLKVSNDIFLTVDSGKCALLILLDLTAAFDTIHHNILIERLRLWAGIQGNVLNWFSSYLSG
RTFSIELGNFSSSSARLECGVPQGSILGPALFSIYMLPLAAICKKHNVSYHLYADDTQLYLPIKMGENSVLQSFFTCFNE
IKEWLAGNFLHLNESKTEVVVFGPPSVCESTINKLGSIKPKVHSHVKNLGVTFDTELKFDKQINSVVKSGFYQLRNIAKL
KPFLSFKELETVINVFIMSRLDYCNSLYSGVSQASIARLQLVQNAAARLLTGTKKFSSISPVLLSLHWLPVQFRIQYKLL
LLVFKSLNGLAPTYISELLHWHTSLRPIRSENTFQLVVPKTRLKSRGDRAFSAAAPRLWNGLPLQIRSCSSLGAFKSHLK
NHLLSLAFDCN
>CR1-42_HM_pol#LINE/L2 1084-4353 No ORF1 in low complexity first 1080 bp.   [Hydra magnipapillata]
MKNKTLCIFCFKTVTDNHKAIYCDCCSSWVHAKCNQIDLLTYNLLSEDSSEWYCFNCISKNMPFGLLTDNELLTTLSCKN
PQTASSNFLVSPIHSRNILKELNTISGSAINCKFYDVVDFNKAIKPNSDIYLHLNIASLPYHIDDLCSLISTLNIIPMAI
GITESNLYLNDTNITDITINGFNIEHCPTEAKKGGALLYLQSNLNYVVRHDLKIYLPKLLESVFVEIIKPHKTNVLIGCI
YRHPSMNQNEFNTTFLTPLLEKLSKEQKLIFLMGDFNVDLLSYSESNPTSNYLDTLCSYSFNPSIILPTRITTKSQTLID
NIFMNFYSSDHLSGNLTISISDHTAQFVCVPGTSNQPNKVKISRCLKRCLKKFDPNKFIIEISKINWELIIKKDDNINES
INNFLKSFNRVLDQCAPYKTLTKNQIKLKSKPWISKGLLKSISVKNKLYKKFVRCKNINTKNELFTKFKFYRNKISNLLK
SSKKSYYITYFNNNINNIKNTWKGIKDIINIKGSLHKTPTQLNLNENIITDHATVSNIFNNYFVSIREKLLNNIMPSEYT
YSDFLNFPNANSFFIDPVSEDEVSSLISNTLKNDKSYGPNSIPTFFLKLTSHIISKPLSIMINNSFKNGKFPDVFKVAQV
IPIYKAGSLLDFSNYRPISLLSNLSKLFEKAMHNRLYKFLDKFKCLYQHQYGFRSKHSTTLALIEITEKIRRALDNKHFA
CGVFVDLQKAFDTVDHSILLTKLEYYGIRGIPLKWFTSYLKNRTQFVSINSTKSDLQNCSNGVPQGSVLGPLLFLLFIND
LNTSFKFATAYHFADDTNMLLVDKSLKKINKHINHDLGNLVQWLRSNKLSLNSNKTELIIFKSNLAPIKKQLNFRLSGQK
IYPLDSIKYLGIKIDSNLSFQGHLNDLAMKLSRSNGMLAKVRHYVNLETLLNIYHAIFGSHLRYACQVWGQSHKQIILRL
SHLQNKALKIIYFQYNNSKSNVLYLISKILKISDLVVFLNCLFVWNYHHKNLPLSFNNFFSITNCHYPLRSISSLNLVIP
KHQSAKYGNKSIKYQCISSWNKLPPDLKSLNSISEFKIKLFNYLLKKYN
>CR1-40_HM_gag#LINE/L2 61-811 via tfasty with CR1-17_HM_gag, 1 frameshift.  [Hydra magnipapillata]
MDITMKSIEKIITKQLEEHKKSILKETERLLKEQEKSFTLIMSANLKIITDRLDTIEKDNNNNKSKIKNIEKDLNEIKDS
LSFQENKTLENISHLKKYYDNQINTLYKKSIDLENRSRRNNLRIDGLKESPGESWDDCEKEVKKFFNNQLKISKEVVIER
AHRIGQKKNNKPRTIVLKLLNFHDKNKILNSLTHLKGTGIYINEDFAQETIEHRRKLWEEVKKLRSEGKYAILKYDKIFS
RDFKNTRFQK
>CR1-18_HM_pol#LINE/L2 1019-4075 1 stopcodon  [Hydra magnipapillata]
MAEAINNIVFDIPGRKNTLNRINDDDKNNNFFDEILVETAYYNVDDVKDVFNSASSNFSLLHLNIRSINKNFENLKLMLN
NIKNKFSIICLTETWCHRDTINSNFQLSGYKSIHQPRENGIGGGVSIFVQNSLTFKHVDNLKVNDADCESFTIEIINKAI
KNTFITALYRPPNGNYNQFENHINYLLPKLIKKHVYLLGDFNLNFLNNKTDNHVARFINTLLQYSVFPIINKPTRVTKTT
ASIIDNIITNNYTRAKMQSGIIKTDITDHFPVFLITDSATPKKKIETKTIYVRNINNESIVTFRDLLQEINWELLTDCND
VNNGYDFFIRVFTKQYEKAFPKVKKIINSKNLLSPWMTKGLIKSSKKKQKLYQKFxKKKNYKNEIKYKKYKNSFEKLKKQ
SKKNYYSLLLNKTFGNARKTWNVIKEITGVGNVKIDNFPKRLQRDGNIGDAFVNKEIAETFNDFFINIGKKLASAIPEGS
KSFESFLKKSDSIMDESELLVDELRLAISMLKTNKSAGLDEINPDVVKAVSDIIEKPLFIIFNLSLRNGIFPDQLKLAKI
IPIYKSGDDSIKSNYRPISILSCFSKILERIMHNRLYNYLETNNILYHKQFGFRKNHSTEHAVIDLANQILNGFENNSYT
LGIFLDLSKAFDTVNHKILINKLCNYGVAHSNLKWLQCYLENRKQVVPFDLTCSPFESISCGVPQGSILGPLLFLIYIND
IYLSSKILNYIIFADDTNVFYSDSNLKNIFCNVNTELTYLNEWFIANKLSLNIEKTKYILFAKPSKSENLPLTLPELTIN
NIKIKRVFSMKILGIIFDEHLNWKSQIKLVENKVSKTLGIMYKTKPLLNKICLKNLYFSFIHSHINYCNIAWANNHSSFL
KTIYTKQKQASRLVSGMDRYESAEPLLKEINALNVYKLNIYHNLLFMFKLQNELIPKYFYKNFSLINHKYKTRHSINNYC
IPLTLLKKSDFSITCRGPRLWNSVLDENMKKIKSIDIFKRAIKKHLLNLNNTYILSFF
>CR1-8_SP_pol#LINE/L2 1-2839 via tfasty with CR1-6_SP_pol, 1 frameshift. [Strongylocentrotus purpuratus]
NVRSLGKNFDQFQLLLDKIKYDCSFIGICETWIKSNSSLFFIDGYTLVTNNRKNKTGGGVGLYISNDYESKILNDLTIMS
DILESIFIEIEVPGKKHIVIGEIYRPPQSNFIEFLEIVQTILSSPHIANKMCFIMGDFINANLLSCDSNSQYLDFLNLLL
SHSFLPQITKPTRISNSSHTLIDNIFTNVSSNIESGIVLSDLSDHFPVFAFIPNFHSQCNSSKQVSGFRNLSHVNIERFR
QSLISTDWSEIYNCQNVNDCYNRFLEIFDDLYNLYIPICIPLRSNYKKVPRLPWVTKSLLKCINRKNKLFYKYKVKETEG
SKLKYNRYRNILTSLLRQAKKDYYSSQFNLYKNDAKNTWKIINNVLKSKTKTIHIESVIDDGVKIQDSRDLAESFNSFFF
VQIGPKLAEKIPTSGRPFHSFLTNSNQSSLFLTPTDCSELISIVNNFKNKKSAGADGITNFLLKKVIGVIAHPLAHILNL
SLLNGIVPQKMKIAKVVPIFKSGSKDDLGNYRPISLLSSFSKILEKLIYTRTFKFITKFNILSSSQYGFRRKHSTTHALL
MFINKIACAIDNMSHTIGIFLDFSKAFDTVNHDILLYKLSHYGIRGKALEWFRNYLTDRMQYVNLNDHDSCLRHITCGVP
QGSLLGPLLFLLYINDFQTSSPILSFILFADDSNIFFTHPNPNIIADVVNNELLSVLEWINANKLSLNVTKTNYMLFSNS
ITSLPGNISINDTNILFVEHTKFLGLVIDCKLNWKMHVGNLCKLLSRNTGVINRLKHFFPLDVLLNLYSTLISPYLNYGI
LAWGNCSKTQLHSLLVIQKRALRIIHNVGFRSHSNILFFNNNLLHVSDIFLYNLGIFMYQLTTNELPDSIASLFTKNLDI
HSYPTRKRNDFHIPRLRTSFSQKTIVYTGPSFWNNLHPDLLHSSSIHQFKYKLKLHLLNAYNNNDD
>CR1-7_HM_pol#LINE/L2 409-3466 via tfasty with CR1-41_HM_pol, 1 frameshift.  [Hydra magnipapillata]
ATTNLATSSKVSPPKKTNIDYTRIKSQFIQDPLLNINKLNTSYFDSDKAAIFLKRCELYFSNQFSVFHLNIRSITKNFDE
LKVLLDNLNFNFSLICLTESWILDTTFNQNSKFILPNYKAISFERKSSKTGGGICVYVLDEFTYQIRYDLSFSEPDFESF
TLEIYNKSSKNIIVTTTYRPPNGCLNNFQNHLSDYFETACKKNKDHSFLFLGDYNVDYLKYGENNKVQQFYDSFNEFGMM
PIINKSTRITQHSCSAIDNIFTNTLFHSTFKSGIIRSDITDHFPVFAIFKKPKDLQKKDWYFKKRIFTTRAKNMFKLELS
TVNWNFVFLETCANNSYDLFLDKFFNLYDKHFPNKIIRIKTKGLLNPWFTKSLLKSSKRKQKLYIRFINSKKERDKHNYL
EHKRLYERTKKIARTTYFKNKLLELKGNCKKTWDAIKEILGKQKIHNKALPSVITVDGTQISDVKSVATKFNEFFVNIGP
NLASKIKHTPAHFLSYLSKSDKSLAFKKLTSKELDDSIKKLNKNKATGYDAISASVIKDCYELIKDVLLDIFNKSLKTGV
FPDKMKVAIITPIFKSGDESLVTNYRPISVLPVFSKILERIMYNRIFAFLYDNNLLYYNQYGFRSNYSTEHALMQLVEVI
SEASSHNKFTLGIFLDLSKAFDTVNHQILLEKLKYYGISHEYHKWFTSYLTDRKQFISLNDGFQTNKLKISCGVPQGSIL
GPLLFLIYVNDLYKASNTMSTIMFADDTTLFYSHSNIISLFQVANNELEQISNWLIANSLSLNADKTKFSLFHSKRKFQS
IPKSLPMLYINNINIERSFTNKLLGILIDENLSWRDHINHISNKISRSIGILYKTRQILDKSTLTQLYFAFINSYLSYGN
IVWGSTNKSKLDCLLKQQNHAARIIHFQNRFTNAKPLLKSMRALDIYELNIFQNYxFMFQHQSKKTPKVFENIFHKTLNR
YNTRSTGRFKKPFRSSKLTSFAISYRGPMLWNHFTSLSGKLKEANTSQKFKKNIIELIANHDSLHDFF
>CR1-12_SP_pol#LINE/L2 1234-4200 [Strongylocentrotus purpuratus]
MFDINEDINLFDIDSFELTPFEFDNRLCSKFPKAFTISHINIRSLNKNIDALRLLYEECIKSKFHLIGLSEVWNVSCADI
LGIDGYTLEVNCRDPGLRGGGVGVYVHSSLKYKMLKYDIDFAESLWLEVQIGDRSVVVGVIYRKPNTDIFQFQGSLLSML
ERIKVDKKLCILMGDFNIDLYNPCSVNAEMLVTSLVCLGIHQLIKTLTRVTPMSGSLIDHIYTNMGADRICAGTIVTDVS
DHFPIFAIFEDSSVKLQPQGEVRYRSYKNYEKERFCDSLLLESWENVYECTDVNKAYDIFVQSFIGICDQYAPIVHRHSS
RRKNDKPWLTRAIKKSIKKKHKLYGKVLKSNYSEDNLKKYRTYRNVLTTVLRNAKRKYYSDIFEMYKGDTAQTWKSINKL
LKSGNSKVKTSHVDKLCVDDNGSKKVVTSGKEISEGFNDFFVNVGPYLAKSINGNVDDVITFKDYLSDGIINSMFWEPVT
HYEVQDYLLTLNVKKACGFDDIPARLLKDAAEVIAKPLSYIYNQSLLNGVFPEAMKVAKVTPIFKKGDRNVPGNYRPISV
LPLLAKIFEKLVNKRLLDYFERNDVLYKHQYGFRKHYSTKLSLINLVNDVLKSLDKGSVTLGVFLDFQKAFDTIDHAILA
GKLEHYGIRGLPLQWFKDYLCSRFQFVNYDGHSSLKQIITCGVPQGSVLGPTLFLLYINDLPNSTNYFNFRLFADDSNLF
HTFPPRQNLIDMDIVNMHLDKVTIWCKVNKLTVNLLKTNYLLIRGSRQSVVTQGVLKIAETEIAQVDVASFVGIYIDQHL
TWKPHIQRVNKCIRKRVGVLYRLRQFVPRRVLLLLYKTLIQPHMTYGIEVWGSNYEMNMKCLLLSQKMALRVITFSPIRT
HSQPIFQELKLLNVYQLHKLSICVFMYQLLNDKLPQSLIQYCCFIEHNYETRQRESKKLSVPKVRTTQGKFSMSFRGTRY
WNDLPLSVREKASVSCFRRTLISQMLIE
>CR1-14_SP_pol#LINE/L2 1056-3932 [Strongylocentrotus purpuratus]
MSLRMLYQSAINSLDLNAISNVLSPMNDEENGLGISQSFFLPDELNEKLSFNKINSINFSMMHINCRSILKNMDGISSLL
NNLDFQFSVLGITETWLNETSSTGLCNVKGYNFININRQNRRGGGIGIYLRDSLVYKQRDDLNINNDSFESLFVEIENVS
DKNVILGVVYRPPDQSIESFFDQLSSVLAIVNNENKLIYLMGDFNINLLSTVSSQNANSFLNLFTSFFMYPLIHNPTRIT
DHSATLLDNIFTNDMKNKFSGVILVDISDHFPVFSISYSNRINEKKKHILKRIMNERNIIKFNERLKDVYWNLKLSDPNA
SYSFFLAKFLRLYDECFPMQEILIKSKCMNKPWMNRDLLKNIRKKWRLYKKYLKSPTEYRKNVYKQFRNKITNEIKKSKY
QYYKNKFNNDKGNMKATWKTINEALGSKSCSKQCIDEINVDGRKITDKDEVSEIFNEYFVNIGYNLTNNVQYSKSFDHKK
LKRNDKTAFFSPVTCKEIIDIVCSLKNGTSPGYDEINVGVIKKVIHIIAPQLCSIFNSCISYGVFPTQLKLAKVIPVFKA
GDVSYAKNYRPISVLPLFSKIFEKCLYKRLNDFLFSCNILSDNQYGFRSGHSASMALLEFIHKACKAIDSKEYMVGLFLD
LSKAFDTLDHYILLSKLEDYGIRGNVLLLFKSYLLDRSQFVVINNHKSSNKQIRCGVPQGSILGPLLFLVYINDIITSSK
LLQFILFADDTSVFMSGSNLNMLLDTFTVELHKLNDWLLNNKLVINIDKTQFMLFTKRKVEDDNLIIHFNGQAINRVSFT
KFLGVYIDDKLTWHEHIGVICNRVAKGVGIIYRLRHFPRYILIMLYYALIIPHINYCNITWSNGSDYFMTKLFKLQKKAV
RLLYDAPFNAHTLPLFQQLKLLNVYDINNVNIAIFMFMCSKGLLPRSMSCKFTFNYEIHSYETRNAGNFHFPKIRTNV
>CR1-14_DR_pol#LINE/L2 1-998 Fragment via tfasty with CR1-32_DR_pol, 1 frameshift. [Danio rerio]
CLSNRSFKVTIGEHSSEAAFLSCGVPQGSILAPILFSLYMLPLGSIFRKHGLSFHCYADDTQIYLLxNRDSSGLETLMSC
LSDVKAWLSLNFLDFNESKTEIIVFGLSNSSRTPPVDLGEFGFSVKPCVKNLGVIFDDGLRFDKQINAVVKSCFFQLRLL
KTVKPILSRNFFKKIINAFITSRLDYCNALYFGISQTTLSRLQLVQNAAARLLTGTKKHDHITPVLRSLHWLPVHYRVTF
KILLLVFKSLNGLAPSYLSDLLTEHQPGRSLQSSNQRLLYIPKSRLKCRGDRAFAVAGPTLWNALPLCIRSISSLSVFKS
RLKTYLFDLAFYQ
>L1-40_XT_pol#LINE/L1 1614-5489  [Xenopus (silurana) tropicalis]
MLCILHFLSMDNIKIISWNVNGINSPIKHKRIIQELKKLDTDIALLQETHLNEDENQKLCSSWVADNIYSPAINKKGGVS
ILFSKKLNFQLINTSRDNSGRFIHAEILLQNQSWNFCSIYAPNNNKPEFYRDLIHRINSLNSFNVIVGGDFNESHLWSLD
KCGTSTNPSHSKSKLFSDLLDHTNLKDVWRILNPSSKEFTFYSHSHGMGTRIDYILTSTNLLSHVSDATIGNFTYSDHTP
ISITFTANFISKSYIPWKFPVFLASRSDFQQMLKDKWKIFLSDNAIHSNNPTLFWDTWKAFIRGEITSFRSQFTKKINSK
ILDLSNKQKEAYIAFKSTPSQVNREEFENSIKELKSWLSIKDSINQSYVKSKYFNLGNKANKLLANMTKNWSKSHKICAI
KSIDDKITHNPLEIAETFRKYYETLYSSTNSNSKLRRSFFNNITFPKISQSDLENLNSPITEEEVRFTISSLKKYKAGGP
DGLSGPFYKCLINEISPFLTELYNFIINQKQSLPSSLNSYTSVLLKQGRDPTITSSYRPIALINQDVKILSKIIANRLSI
ILPKLISPEQCGFVKGRSGTKNLRTLIKVIYSAKTNKIPISLVGIDAEKAFDNICWDHLLDTLEAFGFHGPFIDLIHLLY
SVPTTQILAAGEISKLIYLKRGTRQGCPLSPLLFDLSLEPLIRTLKVADSLPGLSINKIRVQLTFFADDLLLIVKDPNKN
LTNIFSIIQRYKVISGFKINLNKSELMDVYGQTSPSILKQLGIGKSLSSIKYLGIYLPTDLQRLYSLNYVPMIKNIISLS
QKWKNLPLNLKGKIAFYKMMIFPKCIYTIINLPLLIKHTDINKLKSALLEFLWKGKTPKIALNKLNYPKSFGGLDLSDFR
TFNLSALTRYIVEWFSEKGKFTNLPLELLTYSHDNILEQIHKPLKFQPAETKENPLFRDTFAVWKLMHKSYKSSYISTPY
FPLVKISTLPNSFHPPMSTTWKQKGIQYIKDIISPSSDKIMDWSEFSSKYQISEKEKLHYFQISHWSHHHNHLDSLSVYN
PLLTTALDNLMASQSRNNIRSIQTSIWSNPILKAHPLDSTAKKWSTYLHTEISPETLTNCIKRFDKLIHTEVWREQNYRL
IHLAYKGFNFDSKKTNFLNKCPKCNTPLPNIIHLLWDCPHINSFWKVIESHLKSTLDFKYNLTPKSALLNFSEDSMQVSH
LLQPKFGNISYSINYLNLILAAAKRIIFKKWIDPNPPLIVEVISELQVLCTNEAIAFKFSNTKNRTRFLTKWRFLMNTLS
PKDRSHLDSLLY
>Vingi-2_Acar_pol#LINE/Jockey 79-3078 [Anolis carolinensis]
ILSQPEATCNLQHASKQTNQRTFSGPTMTIISINIEGMSAAKEQLLYELCRDKKCDVLCVQETHRDKQQKRPKVPGMILV
AERPHAQYGSAVFVKPGLQVSSVHNTEENNIEVITVELNNITITSVYKPPNEEFCFSSPENFDSHQRTVVIGDFNSHSHV
WGYAQEDKNGEAVLSWAELHKLSLIHDSKLPPSYNSGRWHRGYNPDLLFVSDSIVQQCSKSVGPPIPNTQHRPIVCQLFP
TIRPLEVRFKRRFNFRKADWSKFSDMLDDKIISVAPIPEEYERFIKIVKTCSRASIPRGCRTHYLQGITPDTAALLEDYY
RLHNEDPFSEQTLQTAQSILSSISEAKKEQWIKLITEVDMGRSSQKAWRLLRRLSNDPSQTNTHANIKADQIAHQLLKNG
KPKLSTKVGRKPIVRQPDNENNHLHEPFTSTELDMALNKCKNGKAAGLDDLRMEQIKNFGPKARCWLLKMMNNCIASCQI
PKIWRKARVIAILKPGKDRNDPKSYRPISLLCHLYKVLERLILNRIMEKIDPCLIPEQAGFRKGKSCTSQVLNLTQHIED
GFERQQITGAVFIDLSAAYDTVNHRLLLRKTYNITKDYHLTRFIGNLLQNRSFFVEFQGQRSRWRKQKNGLPQGSVLAPS
MFNIYTNDQPLPEGTESFIYADDRAITAQAGSFEMVEQKLSEALGALTAYYRENQLIPNPSKTQTCAFHLKNRQASRALR
ITWEGIPLEHCSTPKYLGVTLDRALTYKKHCFTIKQKVGARNNIVRKLTGTTWGSQPDTVKTSALALCYSAAEYACPVWN
TSHHVKTVDVALNETCRIITGCLRPTPLEKLYCLAGIAPPDICREVAANNERTKALTSPAHPLFGYQPARQRLKSRNSFL
RSTEILAGTPQQARVQKWQAKTRNLNQWLTPDERLPPGHTEDWATWKALNRLRSGTTRCRANLKKWGYKVESATCDCGEE
QTTDHLLQCILSPATCTMEDLLTATPEALQVASYWAKDI
>Vingi-1_Gav_pol#LINE/Jockey 3-2174 Vingi-2_Crp_pol very similar.[Crocodylidae]
NIPVEEAYRRLCGAIYKAACGAIPHGCRPVYTPCLNPECAALLKQYESSGNPDVADHLIESLEAARRARWEKEMTEKLDF
TYSSRKCWSLLRRLGAAHQPSTPSHPPMAPNQVASHLLRVARAPLEKGVKSRLQKEWRTFRRMHRTRTCPEPFTVPELNK
VLDSIKSGTAPGYDNISPEFLKHLGPRARSWLVQFFTRVTCEGKLPKIWRMSKVIGLPKPGKDPNQVSSYRPISLLSVCF
KVLERLILQRILPEVENILSIDQAGFRQGRSTCDQVLALTTXIENGFQRNLKTGTVFLDLAAAYDTVWHTGLLVKIARVL
PAWVTDVVELLLRNRRFRVHMGEKTSTWRRQTNGLPQGSVLAPTLYNLYTNDLPQTQSRKFIYADDICCGFQARTFSELE
HTLNSDVAKLADYCKXWRLQPSVSKTISSVFHLHNANAARELNIYLNGQRLRHEAQPVYLGVTLDRTLSYHEHLKKTAMK
VKTRNNLLNKLAGSSWGARASTLRMSALAISYSAAEYCAPVWNRSSHTKLVDVQLHSTMRIISGTLRPTPLPWLPVLSNI
VPPHIRWEVATSKLLEKIYANPSLPLYDDLLNPPAARLPSRHPLWSKLPHQDRTAETLWCEEWRSTLPPNKFLITDPTVC
PPGFNLPRRQWALLNRFRTGQGLCAANLHRWGLRDNPDCSCGKTHTMSHIVDDCPLTKFSGGLQELHMATEDAIAWLGDY
AHAD
>Vingi-11_AMi_pol#LINE/Jockey 9-2597[Crocodylidae]
LQLSTSRRGCSVNXXSGGNXRLWAXXNYMXRRSHAPSXXDVGTFRQXRSCWWKANSSKAXTRKVFDKFPSSQHRPSLIST
DNMIFQPTPSRPAPRWNFWKADWQKYQRLTNKRANRLEDPSETNIDQGYNTFTSCLTEIAKLCVPRGYRSHYVPCWDEQC
EQLFNIIKQCNDPATVKRTTEQLATALNNIKKERWLTTIEGLDMTHSSRQAWCTINRLTGKGTKKRHCPVSANSIAKILC
NNSKYSNPSKQHTEMIRHLTHEQLKSPYANLNLTAPISDNEFDTAIKAIKTGKAAGPDKIFPEFVTKLRTTMKRWLQKFM
YKCLESNRLPKIWRKADVIAILKPNKPPEDPKSYRPISLLCVTYKLMERIILNRIENIIDPQLPKEQAGFRKKRCTTDQV
TLLTSDIENRFEMRQKTGTVFIDLTAAYDTVWHQGLKYKLHSMIPDRKLCAFIMNMISSRSFKLTTSQGEKSRVRTLKNG
VPQGSVLAPILFNVYTSDFPHTTSKRYMYADDVAIVAQGTDMTELEKTLSTDMELIADYLHKWRLKLSINKSVSSLFHLD
NRRAKSTLNIRVGNHILPHEHTPTYLGVTLDRSLTYKHHIQKVSSKVSAQVAALRCLASTTWGANFKVLRTTALAMVYAP
AEYCAPVRSRSCHTKKLDTVLNSALRLITGCTTYTHTDVLPVLSGIRPSDIRRQTLTSLLAIEARDDENHLLHQLLTEDP
NRWRLKRLKSRKPFVHEAHKLLEEIGDAEPNLWAATEWADRWERSDLFLQRFIPTPNESPTGHDLDREAWVKLNRLRSGY
GRFKTTLHKMNILDSPLCECGVQQTAQHLIESCNLYKCPDRVDGICTLSDNTRQWLIDLEVDI
>8096424_Osa_pol#LINE/L1  gi|8096424|dbj|BAA95894.1| Similar to Arabidopsis thaliana chromosome2 BAC F13B15; putative non-LTR retroelement reverse transcriptase. (AC006300) [Oryza sativa]
MVSCESATTPSPVPYYLKNKNKAIGVNDVKKKVHQFERKEDFLKEILDKVSSQSIPVMVGGDFNLIRHAEEKSNGHVNRR
WMEKFNKFIADAELRELHRVGCKFTWTNKQVNPICEVLDRVLVSPNWDSLFPYAVVKTLTRVGSDHNPIMVLLERQGHIQ
TQRVFRFDRAWLTQDGFKEWVIKHGPERRKDKILDHWKCQGTVLRRKMRGWSMNNISNLRRTKEKLLSQIQKIDTEADMR
QLNSDEWAQRYQLEDELSKIYLEEEIYWQGRSGEKWLLEGDANTAFFHGIANGRKRKSTILSLEDEGRQIEDPAELKQHI
YQYYKNLFGAEVPPKIFLSNDMWTNEGRLTKEESEHITRPFTMVEIEQALKEMKTNTAPGPDGLPVSFYKEFWPQLKNQL
KEMTDLLFEGKLDLWRLNYGVITLIPKIKDANNIKAFRPICLLNVCFKFLTKILTKRLTEVAAKVIGQSQTAFIPGRHIL
DGVVILHEVLHTLKKGHHSGIIFKLDFEKAYDRVQWSFLFEVLQRKGFNEKWVQWIKMATVEGRVAININGEVKDFFKTY
RGVRQGDPLSPLLFNLVADALSEMLNRAKEAGHLEGLVPQLVPGGLTHLQYADDTILFLANTEENIATIKFLLYCYEEMS
GLKINYQKSEVIVIGGDESDTLRVANLFNCKSGKLPFSYLGIPVSVDKLSATNLNIPAAKIEKRLATWKCSHLSYGGRSI
LINSCLSSIPMYMMGIYLLPEGVHQKMDSFRARFFWEGLEGKKKYHMIKWEALCRPKDFGGLGFVNTRIMNAALLCKWIF
KLETGVENPCCDLLRRKYMVEGGGFFQSKVEGGSQFWRGLHEVKGWMKLGSSYKLGDGKNISFWDDIWLGETPLKTQFPY
IFSVCADDNKTTHQMYVEGEWKISLRRTLGEGELEEWGQLHALLQNIELNSGKDSMCWNLNKTGMFSTKSLYREISFGGI
KDYILQELWRCHIPLKVKVFFWLMLKGKIQTGHQLKKMKWKGSPNCKLCGEIEDTDHLMFQCALSQFTWCCFRDAFGWDG
IPKSRAELLNKLSGQSGDSIPVLLSLFAAAAWSIWLLRNDWVFNNKMIVDASHLPHKIVSLHLQWRSLAPVKKRSALDTL
RGLLLASIRKIGGSNT
>3327393_Ath_gag#LINE/L1 gi|3327393|gb|AAC26675.1| putative Ta11-like non-LTR retroelement protein  [Arabidopsis thaliana]
MNVEFLTGAEGEAIITIGQEVLDAMNDLYLQCLVVKVLGRHITIADLNRRLRELWKPNGGMSVLNLPRSFFMVKFDLEED
YLAAAIGDPWRVLGSILMIRAWSPDFNPIRDEIVTTLVWVRISNLPVNYYHETILTAIVEGLGKPIKVNLTILRKERAHF
ARVCVKVNLKQPLKGTVVVNGECYYASYEGLNVICSLCGVFGHLAGACPKRSPGPVVQAGASPRKGNDVSSRGIGGEEIR
KECGKREEEQGMLVPDSSGEENKENEGDGAALTSVVRLGGPDGKLVEGKGRLGVITDRRAGHYKPMKGGGRKGKGGRNTI
ATRGLVFGTIRGEQTEVSPRKRLRVEHENVGRPGGAFSNGSSRNLGNAQLPVGNQRDGEEVRSPASGSASMDLGPKEGAC
SHSISSGGK
>Vingi-1_CE_pol#LINE/Jockey 73-2874 Fragment [Caenorhabditis elegans]
QIMEISNVYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVH
TRADTYSISSPDITICTADLATKCHWSTLYKLGSDHIPMKLKINQAATPKRPKRLVANFKKANWQLFRDHIESRINGYSG
PMDAIPMEKFFNKVILEADKKAVPKGSIDPKLKVDPKPLRLLAKEIADRETRNPLDPEIPILTRELATKRAERKNSEWRK
KAHDQNAKRKSDVSSFWKLIKGVTKGRQYKGPVAFGDGLPKTGATIANKMAKSLVEAGRTKISHDEELKWRKNVRRNKRI
SKIAPLQDRITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIMIPKPKKD
PAIASSYRPISLLSPIAKLLEKAILKRIKNSIESPAHQHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRA
AFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQDTM
LISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTVFSCDPKEHKTKPDIYWMDDPIPVINAPKL
LGITLNTMTGTKDHVGNAIKSMQNKTRVIKSMAGTSWGNDRETMLYTTQALIKPTALYGAPAWTSLLSDTNLEKLEIAYR
SALRACVGLTKDTPTDHIYQECRVLPLKEEYKLATQQMYLAAIKSNTHPCRDLKAKGQLERTSKPPRIPPLKLSDSEKLR
LDNIPGDKTETQKKNHTKLVADFIRNAPNNRILNKPPPRVNYRDERTLPKETRCELARLRCGHSLLVEKYKARLEERQIK
KCLNCGDEEGDVQHLLSCLQTPVPLEELWTSPLTVAAALGLPTKTPFDPGGGH
>LDT1_pol#LINE/Jockey 2378-5395 gi|3859942|gb|AAC72921.1|   putative endonuclease/reverse transcriptase [Lymantria dispar]
ARLNSNKMDRYTPGRVKPRHLKIGTFNANSLTQQKDEVGTFLREHQLDILLVQETFLKPFNKDPRVANYNIVRNDRTTSP
MGGTLIYYKRSLHCTPVDPPPLMYIEASICRLALSGHQPITLVSAYLSPNREHSKQLVEKDLKALLELGGAVIIGGDLNA
KNTSWSCQSSNKRGKTLELFADRLGFDVIAPIEPTHFPFNVSHRPDILDIFLLKNINLRLCSIEVQHELDSDHRPVTLEL
ASRTPGPSGHNNERTKIATDWARLEKNLKSTSSVHLDQIPKDITSKEETSQAIDSLTSHVQSIMDDCSRPVPDTSDRKWR
LPDDVRDLLRRKNAATRAYDRYPTEDNRTRLRSLQREVKQAIKKLRQSKWDAMIEELEPSHTAFWQLSRSLKKDIVSTLP
PLTRPNQPPAFMDDEKSECLADCLELQCTPSTLHPDAANHRFIADEVERRNTLSRSLGNDSPDQPIPAVTTDEVESLVRG
LKTRKAPGSDGISNKVIKLFPAHLIILLCCIFNAALNNNIFPAQWKEAVVIGIHKPGKRRTEPSSYRPISLLRGLGKIYE
RIVLSRLRTFAEANNLVPDAQFGFRAKHSCVQQVHRLVEYTSSQFIMNRYTGVLFLDVAKAFDKVWHEGLIYKLYLLKIP
HYLIHIIHDYLSHRSFRYRVEGTLSTSHPIKAGVPQGSVLSPFLFTLYTSDMPKFNRVHKALYADDTALFCAGRSPTTVA
RTLQTAVTALANWFRNWRLEINPEKSQAVMFTRRTARSYSIDSIPPLKIFNKPVTWTRQAKYLGVTLDDRLSFAPHIKKV
RARAAFVMGRLHCLLNSRSRMPLSSKVRLYTTCIRPIMTYASVVFAHVKPHRIHRLQTLQNRFMRRATGAPWFIRNVDLH
IDLELPTIKQFMKRCSQSYFDSAMTHPNQLVVGAASYRPSKISSIRRPRHVLDEEDDIITLAQQRAYTAREALTNKYPRF
RPRRRGAKPRRAKVTTKNVGTSTLPPATPQAEVRSPQGEPLGDVA
>Jockey_Ele10_gag#LINE/Jockey 309-1448  [Aedes aegypti]
MEIGPSIQPMVATQNLFETLSTDDPDGNVNNRSQSPLNAPKKNRRPPPITIVSKGTKQSRELMNLANIPQSGYQLKAVKT
GTQLNATDEDVFNAVIKVLQDSNTEFFTYTPSHQQPVRFILSGLALYDLAELKEELLLNEVRPLDLKIFSRKKSGPEESV
LYLLCFVKGSTKLSELQGVKTLFNTVVKWRFFTRKPDDSVQCHRCQRFGHGMRFCNISPSCVKCGEKHLTANCKLPVKAN
LKDASVSRSLIRCANCSGNHTANFRGCPCRLSYIKQLEENRQRASKKTTAPNTRAPPTSLPRINSSVQNRLNNPSAAGGP
SYSQVLQGSGQPDRRANLFSVSEFLCLARDLFHRLQGCRSKEQQFLALSELIIKYVYNG
>NLR1_Cth_pol#LINE/Jockey gi|419955|pir||S31175 hypothetical protein 2 - midge (Chironomus thummi) transposon NLR1Cth [Chironomus thummi]
MDCRQQSINVLYWNANGLTDKMLAFLDYLSKQNVDVACISETFLKPNSKIDSHPDYVIHRLDRVDRPKGGVAIIVKRNLK
HQLQPSYNTKLMECIGIKVFINDTDSCHILSVYLPRGSKGGEIDLHLRDDINKITNLRGNYYICGDFNAKHREWNCNVAN
KSGNILQEMSGEFVIYFPDSPTYYPEDRNKSVSTIDLMLSNSNSNLETTELQCTEAMSDHCAVYFQIKTSKIDRTENTVY
RYDYKNANWKKFKAQISRRIEDNIGENSCNTTDEIENHIKILSELIMEARNSSVKMKKIKFESTKLTPEIKDLINTKRSL
RRRWQRSRDNQLKSELNYLQRVINEKIKELKNKNWNKRLSEIQPSNQTVWRIAKFCKKGSKTMPPLTNSGKTFITNKEKA
SALSEYFREAHENPLEQNDPQHTQEVNNTVKEALEQDNDENPELTDVNEIVSIIRNLKNPKAPGLDEVNNILIKNLPEKG
FEYLKFIINSCLKLNHFPKVWKHAKVIPIPKHGKPASELSSYRPISLLSSISKILERVLLNRINDHLEDNNIIPNQQCGF
RTGRSTSHQLIKVIKSAKENLNNKKSTGMIFLDVEKAFDRVWHNGLLYKMLKLRFPLPLIKTVRSFLSERSFAVFIKGQF
SEIKVIKFGVPQGAVLSPTLYNIFTYDVVRETTNNIGLEADDTALYHSAENSADIVTHLQHTGRKVQQYMNKWKINLNKQ
KTQALFITNRHSRQLPGNNIKFLNENIKWETEAKYLGMVIDNRVTLKPHVEYVTNRAHTALRQLYPLISRNSQLDVRNKL
LIYKLAIRPIFTYGCSAFGSMAKTHLQKLQVLQNKFLRIVLNKTRYERITDLHTEAKIPSIEGSRRKVASESSTVSLASQ
NTE
>Syrinx_DS_pol#LINE/Jockey 1-2613 [Darwinula stevensoni]
GTYCRGSAVYILSNLDSELISRSWQTDSEIIGVKILFSLTTLSVFHAYFPPNFPPSPSDLDFINQINGPSLLLGDLNAHS
PDLSFCSEPNTTGNILSDFIASSSFSILNDDSPTHHCPGLGNSYRIDLALGNAQFLPFFHSFSIGEDVGSDHVPILINCN
FSHEPPPSTSLPRFDFRNADWHSFQDVLETLLPHSLPLETVPQLEEAVTLITEAIQIAQDIAVPKTTPSHKPYNLSVETL
NKIKERRKLRRLFYRNKDPTLKPLINKLNHEIKALIKIESDQYWCDFCEQLNSEEDPANFWKLFKRVGNPRNSKSRPLKF
DGGTHCSDESKASVFASTLLEAMTEPPSSLGRRPPEVCLDLEKKICNFSLSDLSSKPEYLSPSQKALTYEITLDEIEAAI
KVSPNKAPGPDNIFVNSIKHLSSRALHSLYLIYNACLRLGHVPLGWKSAIITMIPKPDKDLSDPSSFRPISLLSCLQKLL
ERILTSRLNDYLETNNLLSPSQSGFRKNLCTTDQLVRLHHDALVAVHSKMHLLALFFDVTKAFDKVWHAGLIFKLFFHFK
IPLQLLRWTASYLTERSFRVRVGNSFSETRSPTAGVPQGSVIAPLLFILYVNDLSSSIPRKLNVCTSQYADDTALWLSGR
DVTALESRAQAALNALSYYCRNWRISMNPSKSSLLLFARDRKPHSVNVRLDGVLIPRSRFTRFLGVNFDSNLRWNEHVNV
IRTKSIRKLNCLKILAGVNKCEPHVILKLYVTYLRPVLTYAFAAWANCPETVLDQLERIERAAIRYAFRLPTHFSNSYIY
RISGLTPLSRHASQLAYNYYNDPKRPGDIKEIPVRLNKKFTIGRFKHCKTYPYNKILERLGKTTNCSPPDP
>Outcast_gag#LINE/Jockey 243-1538 [Anopheles gambiae]
MGVIDPGGNKTFGSYFSILGETSNKNTKKRRKIRGERINLNFSETVKNEEVFMVLESKTPGKSVACYNPFLFAKATEMAI
GCRPLQTSMLRDGKILMRVKNETEAKKLKNINLKHGDCAIEVDVYEHKTLNQSKGIIRSDACRFLSEEELLEGLQPQNVS
EVYIMKRKSQDGVLRNTRTAIITFKSTVLPRNIEIGYFTEKVELFIPNPMRCMKCMLFGHTKNNCNRQKICAKCGENFHE
NCTNPLKCTQCGENHSSLDKDCPVWKDEVEIKRIQTEKKITIKEARKIRRETVPAIPRIYIREKFSSIVRGNQTPIMNEK
RKIDETSENNSNTPKSTENTPTKINSTTNNKYLDNNTEPKKNTNLTTITNDLENHTEKEKHTEIENTETQTNPNATDESA
TNITYYSDTEMYLNEIDIQGTIEIDYKETSQ
>8843742_Ath_pol#LINE/L1 gi|8843742|dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like  [Arabidopsis thaliana]
MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIAKKLDRILANDSWCNLYPSSH
GLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLN
YSGIELRTKEAHELLITCQNLTLANPSVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKS
FNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLP
RNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLL
TSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYI
NWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADD
VMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYG
PLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCL
PKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKV
GNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSY
SWCVDDVDCQGFSAAKTWEVLRPRRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTE
TRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQSTAAAPSLLRKVVAQLVVYNLWRQRNLVLHSSLRVSCS
VVFRLVDRELRNVILSRRHKRRWRELLLLWIR
>55168220_Osa_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MLLSVAQLLDLQLNLLLSYVVMLLMVWVFFHIPLSAGHKIKHEPRAALIKVSKGKLSVNDVIVELERLIPGRWRWVVHDN
GDDTFRTMFPSAAELRRMVEWGKVHTKVGEAEMEIVERGVGNEVKYVIPKVWVQCKGLPSELREYLIIWAVGSILSITKA
VDMLFTRRYDIARLQVLALDPSLIPDVVDVVIGDHLYELAFKVEPESGADEPVPMEMENVDDGNLEEKDDGNMKQVLGKE
VGGDSGNNSMMGSGGQSSGVGGSSVPSAQLSLLPEYDGLTTSDEEFDGLEEEPVVVEKLRTQESLGAKLAAIPEAVISPS
RKSKRRASDSDQIVLERAEKLKTEKNLVNMQAKGKSQNNISFLQFTNDQICASLDNLGVITLGTNFLLDDVINDLKSIEE
KRLGNFVCSSVNQATTSIVESELLDDHLDDNTLLQHLCGDIMEEVMDLSGVDDNYSHATLNFLVPSPNTKKSAKKGKKKK
SIKQ
>47203587_Tni_gag#LINE/L1 gi|47203587|emb|CAF92714.1| unnamed protein product [Tetraodon nigroviridis]
MPVVGTAPAELEKLTRRHGVKLNPAVACSVEEAALAVGDVVGHDSVRSASRMNGAIVIFVESTAKVGELVEKGVVIQDAF
TTVSPLTNPATKVMISNVPPFIRNEALSKELSRYGQLVSPIRMVSLGCKSPKLKHVVCHRRQVMMILQDKQSDLNLSFSI
SVEGFNYMVFASSESMRCFGCGAEGHQVRSCPGNHGAAGGAPRSFAAAVVVANVPVGAEPVAPAPMEALAEEAPPTVEPS
PAGEAPTPDQGSAIEGAPKTTVHPPVDDSLMSQSPSEDEETMGDVKVTRNKKKGKKKAAFEETLTEE
>55240201_Aga_gag#LINE/L1 gi|55240201|gb|EAL40375.1| ENSANGP00000027756 [Anopheles gambiae str. PEST]
MLDVEKAFDNVWHDGLIYKLLHSALSTITTKIKLKLDQFCGLTSKTESFMSGSLMLDAGTHLRPTLEETVNFLFEVLETS
VDVKMVQRNTAQSAVYVTMPTLERAKSIVKEHSGKHCITHEGKQYPIPVEMVDGATEAKIRDLPPGIPDENVSAELNRFG
EVFTIVPGVWGAEARLAGIPSGVRIVRMKLAKPIPSFITVCGEMTGVLYRGQQ
>BNR1#LINE/L1 2327-5999 via tfasty with LINE1J_MT_pol, 3 frameshifts and 1 stopcodon. [Beta vulgaris]
MILLSWNCRGLGARIKRNAVRKLIQKNDPHLIFIQESKLESISPKVMKSICDVNDMNSAISPSNGPSGGLISIWKNSLLQ
VEESRCECNGSYSHGSILSINMKCRFINLYNPCDVQRRTEVWRELIQICESSPLPCLFIGDFNEVLEASERGSQHILTNS
STEFKDFLQVLHLIEIPSSNSKFTWFRGQSKSKLDRVFVQAQWISAYPLIRVSHLQRGLSDHCPILVQSKEKNWGPRPFR
FLNCWLSHPGCMKTISDTLGxIPINMTFMDKLRLLKTNLEEWNAAEFGIIEEKISFFENKIHEYDLIANNRMLDKAELEE
RKAAQIELWQWSKRNESFWAQHSRAKWIREGDRNTRYFHVMASIRRRKNNIEYLKEGEHMIEDPTEIKMAATNFFKNLFT
EEHEIRPVFEGLDFKRLGEQHEHILTDPFSTAEIDAAVAACDSSKSPGPDGFNFMFIKNSWDLIKEDIYAIVFEFWQTSH
LPKGCNTALVALIPKTNPPNGFKDFRPISMIGCVYKIISKILARRLQQVMAHLVGSHQSAFIKGRQILDGALIAGEVIES
CKRNKVDATIFKIDFHKAFDSVSWGFMEWTLTQMNFPKQWREWIRACVLSASASILINGSPTSPIKLRRGLRQGDPLSPF
LFTLIAEPLNLLIKKAVSLSLWEGVEICRGGLKITHLQYADDTVLFCPPKLEFLENIKRVLILFHLASGLQINFHKSSLM
GINIEPKLLDHMASQLLCKVGSLPFVYLGLPIGGSASRINLWEPVIAKIEKKLASWKGNLLSIGGRVTLIKSCLASLPLY
YMSLLPMPKGVIEKIIQLQRNFLWRGSLEKKALPLVSWNVLELPKQYGGLSIGNLHNKNTALLFKWLWRFIHEPNSLWRQ
IVQAKYDIGPTFTIRDLTTPPHGGPWRGICNLIQSSSHAYQIATHMIRKNIGDGSSTMFWHDVWVGEHPLKEVCPRLFLL
SLSPNALVSSCGFWDGQIWHWSLHWKRNLVRKIDASRESLQVLLDRAVLYQDGHDQTIWTPAKSGKFSVKSFTLELAKKD
VPQNFDASKGFWKGLVPFRIEIFVWFVLLGRLNTKEKLWRLGIVPESEKNCVLCNIHPESVNHLFMGCTVASELWLWWLS
IWGVSWVFPSTLKSLHNQWHAPFRGSIIKKSWQAIFFIILWTIWKERNGRIFENKECSMSQLKDLILLRLSWWLKGWGDF
FPYSSTDTPSKPAMSPMEFQAVPK
>ATLINE1_5_pol#LINE/L1 2541-6749  1 stopcodon [Arabidopsis]
MSKDVLRVSVSCSKVGLPSQELLNVRLRLLVQASSRHPKSNLRGLLVARWGPWNPPTLTHEDLSVEDMCRMYSPGFLFLS
ETKNDLLYLQNMQVSLGFDCLQTVDPIGNSGGLALLYSNEFPVTVVFLNDQLIDIETIIDGNRVCITFVYGDPNVQYREL
VWERLTRIGIIRSDPWFMIGDFNEITGNHEKKGGKSWSESSFLPFRCMIENCGMIEIPSHDNLFSWVGRRSCGVTGRRVR
KVIKARLDRAMANEEWHNIFSHSNVEYVKLWGSDHRPLLGSIQNSPQRNFKQFSFDKRWFGKSGFKESVYEGWNLSSHDG
DFFSQKVKSCRKSISTWKKASSTNSEKKIVDLQDQIDRAQEDEAISAEDLLALKWKLCDAYREEEIFWRQKSRELWYKSG
DNNTNFFHAITKQRRAKNKIIGLLNQDGLWIDNEVGIENLEVDYFKDLVTTSNPQDFHSAIRDVPVIISEEINKNLTKDI
SPAEVKRALFSLNPDKAPGPDGMTSFFYQKFWDLTGPDLVIIVQNFLSSGAFDKQLNETNICLIPKVDRPRKMVEFRPIS
LCNVSYKVISKVLSFRLKKLLPDLISETQSAFVAGRLITDNILIAQENFHALRNNPACRKKFMAIKTDMSKAYDRVEWCF
LQALMLKMGFSQKWVDLITFCISSVTYKVLVNGSPRGFIKPSRGIRQGDPISPFLFILCTEALVASLKDAEWHGRIQGLQ
ISRASPSTSHLLFADDSLFFCRADPVQGQEIIKILRTYGEASGQQLNSAKSSILFGHDVENTIRNNIKVAIGIHKDGGMG
SYLGLPEKIHGSKVQVFSFVRDRLQKRLNTWTAKFLSKGDKEVLIKSVAQALPTYVMSCFLLPKAIRSKLSNAIANVWWK
TNENSNGIHWIAWDTLCKPHSEGGIGFRTLEEFNLALLAKQLWRLIRFPNSLLSRILRGRYFRFSDPLHIGASFRPSYGW
RSIMAAKPLLLLGLRRTIGSGMLTRVWEDPWIPSIPARPAKSILDTRDPHLYVNDLIDQNTQSWKIDRLTSLIDPVDIPL
ILGIXPSRTYLSDGYSWPYTKSGNYSVKSGYWAARDLSRPICDPPSQGPGVTALQAQVWKLKTTRKLKHFAWQCISGCLS
TCQRLAYRHMGTDKSCPRCGASEESINHLLFHCPPSRQIWALSPIPSSGSLFPRNSLFYNFDFFLWRGREFDIEEDVIAL
FPWIIWYIWKSRNRFIFENVREPPPETLALALQEAAAWKQAMLIDEDHVDAPPPPSFAEAPPAELVECQFDASWHAEDSL
SGFGWVFVRHDVVLHLGLKSERRSLSPLHAEFDSLLWAMESLISIGMTTGAFASDCANLISILDNQDEWPSFAAEIVSYR
SLVCLFSSFSIRFVPRSFNFRADCLAKKARVRNCIFSHAVGS
>46097581_Uma_pol#LINE/L1 gi|46097581|gb|EAK82814.1| hypothetical protein UM06265.1 [Ustilago maydis 521]
MINPNTVRLNDAELPNVMGDYSSENFLYDAAGRLLVARLNCSGQQLNIACVYVPADSTERSAWLENTTDLLVSLEGRLLC
DIVGGDWNMVTHIQDHTSTRRPNLQERHRLLTFLSYLNDETDLIDGYREHFPDSIMYTHTGPNSAARLDRIYVTPAISYR
SCEWDTHVLPKSLNLDHLMVTARIKPYSPTKRGPGRFRFKCNLLKSQPVQARLTVLVNKLKESPVTPARWTLLKNELEST
LSAIVRTKSQALTSARLRAKRRRTRLLLRRRASPNPSLERKLAAATVRESQLNEYATKAFAYSAMAKNRLLGEKPTKWFY
SRCSASSLSNVSALKSSRTNTLVENPQDLPAVAADFYKSLFAVRLTNPSKGRNFIDLMPKLPRALSESTSVPITSTEVKA
VLKGAATGKSPGPDGLPVELFKEVFQSSSDNAETLCEGLAQLFNSLLQGERADESFSVGVLSILYKNKGSPQDLKNYRPL
TVANSDYKLFTGILAKRLCSALNGVVGPHQYAFLPGRLIDDNIRLVQSIIDENQGSETEGVYLLFIDQEKAYDRVDHKFL
WRLLKQVGLPEPIRHAIKALYANVKLKVMVNGFASKPFPVRSGVRQGDPLSCILYVLFLEPLIRKIQTSEIEGITIPNSA
PIKAVCYADDTVLVLKNQTEVDLARSILQDFCEGTGAQINWNKSSILKVGNPPPITIPEVSFVSPDNPYFHLGVPIGTNT
EVQIQNLWDSVRLTFETIATRWSKAHLSLKGRIMVANSLMFSIPRYHLKFIPISPQTLSSLVKIYYDFIWDQKWLHKIHD
LHALLPPEKGGIGSFDLSCVIEALSAEAVAKLESRDDLPWVQIQRRLLAKLHTRTRGEILSVITRPWVQRVSSRDLKMSE
LPSGIRHMWIPWLRLLKSDSDTISIGPPKTKQDVLNINFWYHRDLTVRPGQGARRFSNFSFRFLAELGISSIGEVWDPGT
RTVILPATLPASKTQAMTQAITNLIRDLPAPWLELLNDTSLYTSSTSDQLCLSLGSGDHKKMAPLHKFRFREIYRQLVSQ
KTKEVNYDARVQPILQIYTNHTGKRGNLAMIWRAARHEFLTPKQGDLLWRLLHAKVKIGQDLHWLPRESQICPNCIIPSS
IEHLWIECPAAQHLWCLVRTIWDKAWDITDPNTAKPAFPQIESRHDLACWLALAPVSDRFHARRWKVLFGTAVWSIWISY
LRWSYSEDLTALFPASIRALFLTLLRNRFQEDRLLSLNSLYTNKTYNVEAFKLTWGQPPSTARAAISVMEILPPTS
>21952510_Bna_pol#LINE/L1 gi|21952510|gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
MIDTFSWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCNYEFAALGRIWVVWDPAVEV
TVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRRLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRI
TRGMEEFRECLLTSNISDLPFRGNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNISNQS
GGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNL
LAAPSSYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQ
THCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSI
VGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVK
GRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLC
GYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLES
FKNLSGLEMNTEKSAVYTAGLEDTDKEDTLAFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFA
GRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNL
RLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIE
AIGASGPQLTGIHESAVVTEASSSTGWILPSARTRNASLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWE
CLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGSLIWQQV
LARFGRSQMFREWKDIIEWMLSNQGSFSGTLKKLAVQTAIFHIWKERNSRLHSAMSASHTAIFKQIDRSIRDSILARITR
RNFKDLLSQWFTFE
>9294088_Ath_gagpol#LINE/L1  gi|9294088|dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like protein  [Arabidopsis thaliana]
MVDVGGKDRPPEDPPDKPESWARKVIGTGLGGMPIPEEILDDEFVKSRVTLKFPNGVDGEPVITIGQEVIDAMNGLWKQC
MFVKVLGRKVSLAAVSHRLREMWKPSGAMYVLDLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDE
IVTTPIWVRIADMPVSFYHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQGALLVNGDRYYVAYEGLT
NICSKCGIYGHLVHNCPKELSEQAAAVVNQLRVSEVDVANTVPQGDGFIMVNKAGRREESGLRNSGVPAGGDRGVGGNQR
RELYRRKGAENIALSNSCGRLADDLATKEVRKVANQSESNKENENIQPRAPREQSVEQGKAVVFGALLENRISGPYGGSK
EKRPVNKKAGEANGSKPNHVRNNRPTRSLVFGPTKGDYEKLTNGKQIRVEKESFGRVTNGTRTVVDGGAATAMEVGVTAL
NEQECMGQGIVRSGSGVVAQERSPTVAESDLVGQKSRSPGPGVVTHERPPTSPNRVIMGMNLVLSGAGVITHERPPAEMD
SHALELRSITLGSVVVTHERSPTTNTGSRSA
>31431179_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MPWALLEGSRAGDTQAAQCCSTGLSQLGSVGFHGDGDMSARREERCGDGDSLHGAGWSIRDLIPKQVEEIELPSRWLWVP
RGRVLEPQLGFPARKAEIHKFGGSARRIWKAARRRVDSRSFAEVVRGDSMERRPPNPRPDQWQSNKRRAVDEEQRDWGDR
APWEREEEELRGRLLGQNQRRPEGRWRPDERREGGRNWQGEKGRVWQGEQREGLDVRRFDKGRKEQVQEGPREDTIKCYN
CGEFGHHLVRCTKPSLCYVCKSSGHISSHCPTMMGSCKRVEIKFKGYGVNEQGFYSMKIDVPAGEGSKTACRGILSVIRG
KGSVPKVMAELSSLFKGLKWDWKVRQINDNDFLVDFPNPEARSKLTLVKSFDFDKFPIKASVTESKMTVDELYVVWVRMY
GMPDFARSEASIKAVAELVGELEEVDGTSVAKGEFVKMKIECS
>34896428_Osa_pol#LINE/L1 gi|34896428|ref|NP_909558.1| putative reverse transcriptase [Oryza sativa]
MADTRSSAEDETKRPTEEETGRDGEMGSEPNLEERLKRLNMHGEEETDLDFSEELEGLIKDVRWLALFRVYTTKPFSHSA
LLNAMRNAWSSAQDISFKVMDSNLFMVQFQCLGDWNRVMEGGPWIFRGAPVVLKEYDGFTNVFDYKLDKIPVWTRIHGVP
DGLMKKRELAERVAKKVGEQPFTVIVDEGRINPVKYLRARVFLDLSKPLVRFVPITIKERILYPRRRRKKIKGLIDENGC
FQTDEDRMSNIVYGYFQNLFSAEVTQIDGSSLLDVQRKVTGDMNFGLLAPYTAEEVKNALFSIGDLKAPGPDGLHAVFYK
RFWDMLESDLVKEVLDAINTMKIPDGWNDTTVVMIPKVDKPDRVTQFRPISLCNVVYKIISKMLANRLKCLLPEIISDQQ
SAFVPGRLITDNVLVAYECLHTMKKKKGRKVQYRVNFNGVLTEVIKPSRGLRQGDPLSPYLFLLVAEGLSSMLQGAENRG
DLVGIRVCREAPMISHLLFADDSLILMQADKNNADHLKAILDIYCQNSGQKISEAKSSIFFSRNTAVEDKAAVCGSLDIM
TEALNDKYLGLPAMIGVDKSDCFRHLIDRVNNRINGRKEKMLSTGGKEVLIKSIAQAIPVFAMSVFRIPKKICDCISEAI
ARFWWGDDENHRRIHWKAWWRMCIPKQRGGLGFRDLYCFNRAMLAKQIWRFLCDPDSLCARVMRCKYYPDGNILRARPKK
GSSYAWQSILSGSECFKGYIWRIGDGSQVNIWEDSLIPSSSNGKVLTPRGRNIITKVEELINPVSGGWDEDLIDTLFWPI
DANRILQIPISAGREDFVAWHHTRSGIFSVRSAYHCQWNAKFGSKERLPDGASSSSRPVWDNLWKLEIPPKIKIFAWRML
HGVIPCKGILADKHIAVQGGCPVCSSGVEDIKHMVFTCRRAKLIWKQLGIWSRIQPILGFDRSGSVLVEEMIRKGGKVSH
LNAIGMTELILTGAWYIWWERRQLVQGERIQNPARSAMSIATLTTNYMLSNKKGSGGIGVVLRDHLGACVAASQAFLPHV
LDAPMAEAFALRDGLSLAQHIGAKNVIVQTDCMQVVSTMMDGGFSATAAMSVFDDCKLMWDGFGTISIEHCNRNSNQVAH
ELARCLIGRKSSLVSFAAFQPWKCDSIPLPDQSCLLTPCAKLDAALSVQSAAVGHFAVPVDSSLR
>31431911_Osa_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MERRPPIRPDWQANKRQAMEQGGGDWGIRDVREEEGLRRPLPNQPRVNPNVKPQGRQAAEMERGAGTMKIKCFKCGREGH
HQANYTNPPLCYSCHNTGHIASHCPLISAKRCVKLCGFGIPGQGFYSLQVEISDAEVARAPVRGILTVIQGEASVSKVLA
ELKHLFVGLTWDWKIKQLNAKEFLKKFPSYEVRSQISTCKSFDFETSQIKASVVETGITEEAVDELVAVWVKIYGIPKMA
RSEDYIKSIVELVGEFEAVEVASIRRDGPVRVRVACKDPRELYFSIHLYINKVGYMIRWEPKGYLPYENRQNPPDDDDKD
DKDDEGLEDDMNLDDEFKNHDISRGRPLKGEGSQHESRAGAFSAPPTYKGKVSSEQGGSIKMIASKKTSLLKHPDLFESC
TSLVIWGDKKQEMIAEQESQELEAPELSQNETRPEFSTLLEFDEDLERCQIPTDSDIERLREEEDREEEDSFQEVSNRKK
GKAKRTEPAVTSRMSLRHRELAVVPIPKRAKILTQRKNLEQPGNNSNPFAVFQLLDSVELKKIDVAANIDLGSNPVEIDN
NIETLKAKELVQAKLAELNWKNQLEKQKPQAGDVSVPAKVIESEDVSSIKELETDLRVEKDGISPEPNKRGGVKKQRKK
>Jockey-2_DPer_gag#LINE/Jockey 864-3005  [Drosophila persimilis]
MVRKPCPKSKKKTNLASSAPCSDNEVDLHSPPSLLMSGXSQSDLRPLSCRSSSLADLTSDMPSTSAAAAAKLMQAPSTVK
PLLAPPSAMLTRASAATASAATACAAIPGAAAKATAPTRVAAAAAKRPSTSTVPSAARVGAAQRTPVSTGAARAAAASAA
TCAPGSSATAVATNPTALAASVPSQMTLHEILKEQREKLAKERKVMAMLKAESEARNKKRTTTLASPITKVSAKMVKRMV
SSKEKRDPNQMSTTNYYNILSDADDMDVDADCSEGETEAEEPVPTNRPSTSQTTPPPAPTTAHATNAAATADAKIVRPAP
IYIPNVTDIFPLLQCFDNAIGAGTYDTRPAANRSLKVMCHTIDGHRALIRLLNEGQGVEHHTFRLKSERGMRIVIRHLHR
STPTDWVREQLGRLGYKVRHIANILKRFTKEPLDLFEVELEPQDINNSIYELTAICSQRVKVEKPIRAPGVPQCHKCQMF
GHSKNYCNRAVICLKCGDKHDPKDCPKKREEVPKCANCXGPHVASYRGCVKYKEYCNKRRNGLDQTNKMLNKLSMPTLPA
TQGLRRPRQPPVMNQQGFPALQQPSRRRARSGARAPAPPAQMSSYADALRTRQPASHSQPLPGRQVWHSVPPTAATTGFQ
PVVSSQSVRPSDELSQKLDYLITLLTQERIQHAAAAAESTQKLEGKMDILIAQMTKLTDCLYASIQANSYARNV
>Jockey-2_DK_pol#LINE/Jockey 1864-4518  [Drosophila kikkawai]
MSNLRISTWNANGVSRHKLELTQFLNENHIDAMLLVETHLTSRYNFHIRGYTFHRTDHPDGKAHGGTGILIRERIKHHFH
QRFATNYLQATSIKVQSGNGNLCIAAVYCPPRFTISEGQFMDFYNSLGDRFIAAGDYNAKHTHWGSRLVTPKGRQLYNAL
INVRNKLDYVSPGSPTYWPADPRKIPDLIDFAVTKNIPRNLINAKALPDLSSDHSPLLITLLQSPETTDRPYRLTSHRTN
WMKYKKYVSSHIELAPQLNTEADIDSXTSALEEVLVTAARISTPQQXDVQKIKFKTNQQIEQLIQEKRRLRRAWQTNRSP
CSKQRLNEATRKLSRALKQDAEKAQLRYIEKLSPTSTKHPLWRAHPNLSSPAETITPIRKSSGCWARSDKDRAETFASHL
QGVFQPNPAAXPFELPQXXTETESTPASFRPNEITKVIRELKPKKAPGDDLITQKMIIELPNCAIEVICKIFNGIISLGH
YPTKWKKSIIIMIPKPGKDHTIPSSYRPISLLSCLSKLFEKCLLKRIIPYLGAHNIIPAHQFGFREKHGTIEQVNRITSE
IRTAFEHREYCSAIFLDVSQAFDRVWLNGLMHKIKTLLPVYTHKLLESYLYNRVFAVRCNATTSGTYSIEAGVPQGSALG
PTLFVLYTADIPTSDQLTLSTFADDTAILSRSRCPVRATTQLANHLKVVEKWLSDWRIKINEQKCKHITFTLNRQTCPPL
YLNSTQIPEVNVVTYLGVHLDRRLTWRRHIECKKIHLKLKASSLHWLINSRSPLCLDYKVLLYNSTLKPIWTYGSQLWGN
ACSTNLDIIQRAQSKILRTITGAPWYIRNEHIHRDLGIPAVKNEIEKQKASYKEKLSTHPNPLARDLIRVSRRSRLLRND
HPTQP
>Jockey-2_DVi_gag#LINE/Jockey 351-2264  [Drosophila virilis]
MAQRQHNNKQITTPIDEEDSDIEIQLIKAGRGPFSANNALKIPAMQIDANQNNNEQLNHAPSTSRAAGLAAANKVAPDAA
ATTKKSTLADLLTKIASDKKLKGKVSKRHAIPDNSAKRIKMLEADISKAAANDAALSEELENLLGNGQQHELWVTDHPDE
DMQIDAVDPVTDAPAPNITNVNVNNNTTVNHANSAGVDVRAPVPKVQKIKPAPLFIPFVPEIMPLIEGINDVIGEGTYAT
KPSAGQGLQVLCNDVDSYRKLVQYFQDNSIASHTYQLKHERGFKIIMRHLHRSTPADWIRTKLSDLGHKARFVSVIKKRF
TREPMDMFEIELEPKANNSEILRLNMLGGQKVKAELPLRTTDIVQCHRCQQFGHTKNYCRRAFVCVKCSGKHPSTECSIT
ANDRPKCANCEGPHAASYKGCQSFKDACKQKESESVVKANVLLAQLGQPTLPVMRSRQRKRSQQRQQQPPKSVQQQDQRQ
RSKXRQRVHIDQQQQQQQQQTVNFAANSYASALRSGLPDMHSQKQQQQKLKRQTAQQQHRQSRPKQQQLPTRRQMDGQQT
LARQQNRSRSCSTRRSATNLNTNCDIGQKLDTLITLMTEDRLRANSNVENKLDKLLNLLTNLTSCLMAKEQVTSKQNV
>Jockey-3_CQ_pol#LINE/Jockey 1530-4190  [Culex quinquefasciatus]
MDLSNSINIMNFNARSLKAKENEFFNFLRVHNVHVAVITETFLKTGTYLKSDPDYKVITNNRMNRNGGGVAIVIHRSMTY
STLRDFKLKVIESLGIELETSFGKIMIAAAYLPFQCTGENKNYFKGDLNKLTRHRSRFLIIGDFNAKHQSWNNSKVNSNG
KILFRDCTSGLYSVLYPNGPTCFSSVRNPSTIDLVLTNQSQYCGPLVTHADFDSDHLPVTFSLSHEAVTRPNSSVFNYHK
ANWDRYQHHIENNLNHDFVLETKADIDSALESLTNAILDARNIAIPKVQVKFDSPIIDDDLQLLIRLKNVRRRQYQRSRD
PALKRIQKDLQKVIDHRFTLLRNEKFARDVEQIKPYSKPFWKLSKVLKKPQKPIPSLKDGDNILLTNGEKAQKLAQQFES
AHNFNLNVLSPIENQISIEFQNIVEQEFSSDEVFNTDLNEIKSIIKKFKNMKAPGEDGIFYILIKKLPEATLSSLVKIFN
KCFDLAYFPSSWKNAKVIPILKPDKNPAEASSYRPISLLSSISKLFERIILNRMMTHINENSIFADEQFGFRLGHSTTHQ
LLRVSNLIRSNKSEGYSTGAALLDIEKAFDSVWHKGLIAKLKRFNFPIYIVKIIQNYLTDRTLQVCYQNSKSDQLPVRAG
VPQGSILGPILYNIFTSDLPDLPPGCQKSLFADDTSISAKGRSLRVITRRLQKSLDIFNSYLKEWKITPNAAKTQLIIFP
HKPRADFLKPKSHHIIKMNEVNLKWEDQVKYLGLGFDKNLTYKDHIESIQVKCNKYIKCLYPLINRNSRLCLKNKLLIYK
QIFRPAMLYAVPIWTSCCLTRKKKLQRIQNKILKMILKLPPWFSTSELHQLAEVDTLDVMSNKIIDAFRQKSLQSSAALI
RSLYSL
>Jockey-3_CQ_gag#LINE/Jockey 146-1543  [Culex quinquefasciatus]
MRQNKGKRKSSEDLVVTSVKRLNAKPANGNRKRKQPLLRSDSDSECEVNPPIPLTNSFGVLSETDDKEPSPRTEPSAVEK
RVKAPPIVVTSVSDLASFRTQLKNCKETCNLKVSFQLGRRGECRLLTESLQDHQTFVGYLKNHKHNFYTYETKNARPFKA
VLKGLSNDLSVDEIKNELKVLLGFAPSQVIPMKKKSNGNISRFGLTSQFYLIHFNRNEINNLKLLDKVQFLFHVRVKWEH
FKKHGGNGQNLTQCRRCQAFGHGTDHCAMVPKCMVCGDSSHDKDNCPVKEVTQFKCANCGGNHKSNFWDCPIRKKVLDSR
AKHQPKSKPKFSQSQVVPASLNQTFVLSHSNNSRNTPTVEKLGNNNGISYANVVSGSSTNFKSSTNLSEIGQVPQISFEN
FSAGNALGSSDLGDVTFEKMTFLQNSLFGLIQTMSNATSMMEAIQIGLKFANDVVLTLKFNHGSK
>Jockey-2_DGri_pol#LINE/Jockey 1008-5429 Unique stuff after 4500. [Drosophila grimshawi]
MPMTLLMIRHTTTNSTSSVGTAVNIAAATAISDEEITPAKTLKIVYWNAAGIRNKILELEVFMQRSQIDVMMIIETRLDP
GNRYDNMIDDAKTLDIDGYTTYMAVSPRGRRSGGVAILVKHGIAHMAMQPIEYPSVQCMPVALLPPSGSKDLVLVAPIYC
PPLYNWSSRHFALLFEHIDSLCNVGNFILCGDWNARHSWWGNVRACKRGSGLMEVVHKNKRLNVLATGGATHYPYDKKKR
PSALDFAVFGGLGSARLRTFSTIDLDSDHLPIHVDLATKGTSIDTRPGLRRTILPRNANIGKFQAYLNQRVLLNVEINSG
ADIEDAIDVFINNINEAAKFASPPQLWQKQRSNTSCMGSRLDDETGKLLQLKRKYKREFLILGTPLARQRYRQVQNRLRK
ALSLLKVNHLNHLFKQIDVKDRYRMQKLWRMTQTLKRQVEPNWPLKARSDGDVGGPVWTRTNAEKAEEFVSHLERRFMPN
YLNTEEDRKKVTDEWQLLELRQRRVDGDGGASGAPLPFRPVTLSEVTLEIKSLALKKSPGLDNISNHVIKVLPVKSLLYL
VLLFNSILRFGHFPQQWKCAGITMLLKPGKSTESVSSYRPISLLSGFSKLFEKVLMRRLFECKDFASAVPSHQFGFRKEH
SAEQQLARVTQFILGAYERRQYCSAVFVDISEAFDRVWHAGLLYKLIRLLPPTLYRVLQSYLSDRSFVVNTGGVRSRPGI
ICAGVPQGSVLGPILYTISSSDMPLPSLIRSEQLSAFPSDCTMLLSTYADDTIVLCAHNGAREAIRGNQCFLNKFMAWAN
YWCIKINVSKTAHVVFSRRRPAHSLKLPAIKLDGQIVEMQSKQRYLGLLLDRKLILHSHVTQLCIRLRALCRKLDWLLGR
SSMLHRSCKVVVYKQLMAPVWQYAFPIWGALVSNTQMRRIETLQNVILRKILQVSWYTRNQVIRDSYNIKTVEDVFQVAS
SRYASSLGTHPNMEARRLLFQPFVPVRLVRPRYTQQLDTHILPLQRQFQIRPTLEEELPTLLLIEQREQNAVREARELDR
LRQLCLQSSGRMSEMVINSLRRRYRDGLISRERVEALIAHQPPQIQNIILPQLRQPGEQQDAPAIWQLQRKVHLPARFDG
GRINALRRDFRLGRITREKLEQVIRGQPAQIKELILPSVRAAGGDESVLIQDVPMQQQQALVHLNPVAIPLNRKCNFPLM
DENRLCIRPRMDMERLELPQLGQTMQSEVVVQHQSQHSPSNDVLELDVRLGDLRQQLEQDMDDELLLEQQKVTKQPEQFQ
CRPMESTFFPDQLLSVRTQHHLLMQQFQATSVKRPCSFPLMPSKRLCTHPYRHHIMPRRSNPEKRKIKRALPPAKRMCTC
ECVDKLPDRTNPCMHVRPSNSILLPWQQQQSLEETLQEQRRRSFSLRKRPLHHLWQDWRRQVLSPWRMRRQCANGVQQFT
WVNDRCLIPVWRPLHNSRRLAHRKARPPRIWLSL
>Jockey-1_DEr_pol#LINE/Jockey 1876-4581  [Drosophila erecta]
MNTQIVIWNANGLARNKPEVELYLKTNQVDVMLVSETHFTTRSHFKIPGYEVVNALHPADRIRGGATVIVRSGLLYEEME
PVQLDWMQCARIQLLTHSGKICIAAAYLPPRYTISHPELSLQLKNLGPKFLIGGDFNAKHTWWGSRIVNPKGSTLLRCVR
ELGCNLHTTGEPTYWPSDPNKIPDLLDLGISRGIDPAKVSTVGCYELCSDHSMVRILLRTSFLRTPGGTKLIRRNTDTTV
FKSWLEENVDPHPAISTGGDIDDAVASLTGKIQQAARLATPTPPTNSGRLQVARRDNHLWSTELASMVSEKRRLRRVWQS
SRAPSDKRAYNRACKQLKQMLHDSRSKALEEYLVELEPGNAEHNIWNATKYLKRPARRVPPVKTAAGVWCRSSQEKADAF
ADHLETSFQPFALCDDEDVEETKQFVDAACPMDLPIAEIGSQEILDEISCLKLTKSPGHDQIDAAALKLLPANCIEFLKA
LMNQCLRLGHFPSQWKCAEVILIHKPGKPEAELGSYRPISLLAILSKILEKLFLKRLLTILEEKRIIPDHQFGFRQGHGA
IQQCHRVVSRVLDAFENKKYCAAVFLDVRQAFDRVWHLGLLFKLKQQLPTPYYMFLKAYVEERRFYVRSSNSKSPQHVVR
AGVPQGSVLGPVLYNIFTSDMPVSEDNRILTCTYADDTALLCSDATPTLAAQGLQHELDTIQSWLKRWNITINADKSTYV
TFTLRPGNCPPVHINGTNIPSNAKAKYLGLTLDKRLTWKDHIGEKVKLMRHKCRSMTWLLGRRSTLPTRYKLLLYKAIIK
PAWTYGIELWGTASPTNIKKLQRAECRILRFILNCPYYVRNTTIKRDLKMQSVAEESRKASRRHLEKLENHQNQLAINLL
DNSLQRRRLRRNHPLDLPFRIP
>Jockey-1_DBp_pol#LINE/Jockey 878-3574  [Drosophila bipectinata]
MTLSKIKIGLWNARGIVQKIEELRLFLIDTSIDIMLITETHMRPGLNFYIPGYDQYFANHPSNTAKGGSAILIKTGIIHT
QSEPTTRTDLQLACVDIQTNGGLLKIASLYLPPSEPWTKHDFDQLLVSLGPKFLAGGDFNAKHQWWGNLRSCCRGKRLQE
AIVSSSSQVLATGEPTFYSSNTRLTPTALDFFIVNGVPLNKLAIETKYELSSDHLAIVATLSQRPQCKAKKKSILPPGSS
VEKFKESLDRSINLNAVINHPDDLEAAVAAFMENIHTAATAATPNQSHLSNHNSSNLLPQNALLLIRLRRRVRRQYTRTG
DIRFHRVYKRLSNRLSKVLTKNKQDHIDQMLENASPDASTNYSLWKLTSRFKRQVIPKAPLRNPAGGWCRSSQQKADIFA
DNLENRFKPLDLAPMENRMFVETQLDRPFQMALPCKPVTLEEVKAQIGKLKNKKAPGEDLLDNKTLKILPIKALLFIVLL
FNSVLRLSHYPRAWKNAIITMIPKPGKQPTEVDAYRPISLLPALGKMMERVILNRILALERVSRAIPKWQFGFRKSHGTP
EQLHRVVNFALEAMENKMYAVAVFMDIQQAFDRVWHDGLLSKLKNLLTPQLFLLVQSFLSERKFSVVVDGEKSSKRPISA
GVPQGSVLGPTLYSLYTSDMPDSWACTEVDDGNMLIATYADDTAVMVRSPSIEIATLGLQEYVTRFEKWTTDWSIGINCS
KCACVTFSTRPKNCPGISMLGSVLRHEAYYKYLGVILDRGLNFQRHTTMIKQAVLSKAASMSWLLSPRNKLSLSNKVRIY
KSILSPIWKYALQVYGIASKSNLKKIRVAQSKIVRSICNAPWFMRTRDIERDLKIPKIGDVIRIHSEKYHERLGSHPNSL
AKRLTWRPKKKKIKKIPST
>Jockey-1_DK_gag#LINE/Jockey 382-2184  [Drosophila kikkawai]
MSAESDLDIEKIAAEAQKKMREALNSSINQFNAIYASTSNNARPVATQDSEQDAMADDDDWWTPRPNNKRRLRSSPYNSS
SKIIRNSNSPKPAASDNRFSDLSDMDTDDEIMKSPQTVGQNRSNQASISTSNASNTTNTSNTTNASNTTNASNQVSNTLT
NNLSNSGNTCNSNNSNTTSCNGSPNQPSDNNETSPSHKPPPIVVKNCENLNGLIRSTDKVVHPTKYSIKCHPDNSVSILA
SDSDAYRAITKSLTSKKVPFHTWQLKEERSYRIVIRGVHHSIPDEDIKESLTSLGHTIRFINRPRSRFDKTKLVNLVFVE
LEPAANNKEIHELKTLCRQRIQVELPFKKDVVVQCYRCQSYNHTKNNCHKEVNCVRCGQQHSIEDCQRDVHPVKCYNCGG
NHTASYKGCIVYQQTVSRRKTATSHRSPHQQQQVTAPTARRGIEPSLSYGYVAGGSRQTQQASPQQFTSQQQLQQFPPLG
SRYRKQNQQSQRRENNRQPQQPMLDTIPRPEQHPGTQQQQQPQQQNLSQQLRNIQNNQQWQRQEEMFMRSDEKMSVLVTQ
LEKMFQMMMSMMTLVTSLLSQNAPGSTQPSSGRLPVYPIQP
>Jockey-1_DWi_pol#LINE/Jockey 1877-4534  [Drosophila willistoni]
MASLRLCLWNANGISKHKNELQLFLDSSEIDVLLISETHLTSKNNFQIPKYTFYATNHPDGKAHGGTGILIKNRIKHSFL
NRFETQHLQATAITVQTSCGNTTLVALYCPPRFSISEKEFTDFFNTLGDRFIAAGDYNAKHTHWGSRLVNPKGKQLYNTI
VNPLNKMDCVSPGRPTYWPTDPQKVPDLIDFAVTKRIPRNRITAETLLDLTSDHSPVLFTLLTRPQVLDRPYRLTNNKTN
WLKFKMYMSAHIDCSPKLDAAEDIDMCVSALESMMGAAARVSTPHASSYTKPVDRPTNRRIEQLVTEKRRLRREWQITRS
PAAKLRLRQAHRNLSKALRQEESWAQRKYIEKLSPTSTKHPLWKAHPTLSAPTETISPIRSPTGGWARSDEERASVFATH
LKMVFQPNPTSNSSVLPPSNTLTDSEYSELQSDEITAVIKNHIKPKKAPGHDLITPKMILELPIIAIQYICKLFNAIIKI
GYFPRTWKKSTIIMIPKVGKDKTQPSSYRPISLLPCLSKLFEKVLQIRLNSFLASENTIPSHQFGFREKHGTIEQVNRIT
SEIRTAFELKEYCAAVFLDVAQAFDRVWLEGLMFKIRQKLPQYTHKLMESYLYNRKFAVRCNGSVSADFEIKAGVPQGSV
LGPLLYLLYTADLPTSLGLTTSTFADDTAILSRSKCPIQASAKLEEHLKVVEEWLATWRIRVNEQKCKHVTFTLNRRNCP
ALMLNNVPVPQAVDVTYLGIHLDRRLTWRKHIEAKKSQLKLKASSLHWIINARSPLRLEYKVLLYNSVLKPIWTYGAVLW
GNASTSNVDIIQRAQSKILRSITGAPWYIRNDNIQNDLNIPSVKSEIGTQQLKYSAKLDAHPNVLANSLTRTNNRTRLKR
NDRPTQ
>Jockey-1_DPer_pol#LINE/Jockey 2168-6145  [Drosophila persimilis]
MNNYAEIPYTTNTISANNTANSLATTTINVNTNNLAHTTTATTGAQYNSSLKIVYWNACGLKNKILELELFMQRNNVDIM
MVIETRITTNDPTTTITDNLTIKDYVLYTASHPSSRRKGGVAIYVKTGLKHIALEPITENFLQCAPIALTTNNNEVIALA
PIYCPPTITWTEQHFKRLFKYMSELCYGSKFIVCGDWNAKHPWWGNVRSCKRGRVLMNTIHANTCLNVLATGGATHYPFD
QRKRPSAIDLAVYAGINYDRIHTYSAVDLQSDHLPIFINLGINGSTTVPVTNRRLLPSKANVKKFQDFLSQRINLNMEIN
SGEDIEDAIDILNQNIYNAAAAATSLINLRSHPRTGQLPLDRKTQKLLRLKWQHKREHMRRPTLETRRLYNAANHRLKKA
LRKAKNNQINNLFKKVDAQDRYRMQKLWRLTNTLKRQPEPNWPLKIPSSSGSREGYRWTKSSEEKAEAFVSHLEERFTPK
LINSDEFRNSVVMECNEIAQLKRLTTKPAWLQRQQFGREYDVNRLPFRPISPNEVMMEIKSLQNKKAPGMDQINNRVIKA
LPQKVIIHLTNIYNCILRHGHFPKQWKCAAITMIKKPSKNANEVGSYRPISLLAGFSKIFETLLMKRMFECEDFEKAIPS
HQFGFRREHSTEQQLARVTQYILDAYEKQLFCSAVFIDVSEAFDRVWHNGLLLKLAKLLPFTYYNVLKSYLADRTFIVNG
NNGIRSRPGRICAGVPQGSVLGPVLYTVFTSDMPLPHLSEQNERIESNIYNNMMLSTYADDTIILCAKKEASTAVRTNQC
YLEHFTAWASKWCISLNTSKTVHVLYTRRSIANGIGELSPKMYNEAIKSKPRHRYLGLIMDRKLVLHAHTTQLAIRVRAA
AMRLNWIIGHQSRLSKRCKMVIYKQLIAPIWQYALPVWGALVCESQFCRVESAQNQLLRKIVKASRYTRNQVIRDAHNID
SAEETFDKASGRLAASLFRHPNLEAKRLIMQPFIPQRLDRPRYTKQLETHFRPLQQQLLQQAAQQQLLLPTLIRHEQLEI
EQQRQLRESQAKEALVERKRLEQERRIALGIPQERPSIIWVNRMAQCLRRGEMNRLEMAQKIRFEPEYIQRLIMTPLEPH
EFPPPTPEQLLEEQMKSLQQQLEKELDDEMDAAFAAEESRARTNPHQEASSVCVEAAQPKAMATPIPKRRQNIINANLDG
NNSAYLYLQANITATDGLLVHPRQIWRPAVHPLACHPAVIPMAACSERPPTPSSIRASPTAGIDXNDVSGMTFWQLLRIH
SAACSSLSLLQNLKEDEKSSSMPIWMAITLLTSIYRQTAQILTASW
>Jockey-4_DEu_gag#LINE/Jockey 197-1366  [Drosophila eugracilis]
MSNDGGSDARRYSWQKVPINPRPAKRKNETSPLLSRKIPAVGAGPSKXNLSNQFALLAEPENITDTNQLSSDPILNEETD
KDTPAVSEKPPPIFVSNVGDINGFLLYLSPSEFTYKTQRDGNIRIMVKKVEKYREIIRLLKVDQIDYHTFQLKQERAFRI
VKNIHPTTLTESIKLAIESHGHKVRGIHNIKSRITKEPLPMFFIDLEPDKSNTEVYNIKHINNAMVTIEPPKRVSEMVQC
FRCQEYGHTKTYCNKKFKCVKCAENHLTKNCTKQENDPATCANCFENHAASYKGCKIYQAITKNKSSQPTRKPVTSETHD
RLRVAINMQRIPSNENAYSRQPNYAQVVRGETATQEISALDRIEQLLVKQSELTTNLLNMIMLLVNKLCK
>Jockey-14_DAn_pol#LINE/Jockey 3-2648  [Drosophila ananassae]
QDIDDAIEIFNRNIYHAAKIATRHIKTSNRNPTGQFLLDRKLLNLQAIKKYTKQIKMARQTPEAAKNYKAANERFLRAIK
EAKTKRTNNILNKIDPLDRYRMQKLWKITNHFKRQPEPNWPLKLYTGDGTSAKDWYSWTKSSEEKTEAFTRHLEERFSPK
LTNSESFRAHVISKKEEICTQKLLMTTPCWMHRENYGHNSDKTNLPFLPITPNEVLAEVKLLQNKKAPGPDQIDNKLIKL
LPHKATLHLTHIYNCMLRYSYFPKQWKRAAITMIKKPGKTPHEVSSYRPISLLPGFSKIFETLLMHRMFKIQDFERAIPS
HQFGFRKQHSTEQQLLRVTQHILSAYEQKMYCSAVFIDVSEAFDRVWHDGLLLKLAKLLPHSLYKILQSYLTDRSFTMNS
TNGIPSRTGKISAGVPQGSVLGPILYTVFTSDMPLPEVISSQHTYNPSYFENMMLSTYADDTIILCTKREPQLAIQTTES
FLKYITDWATSWCITLNPNKTIHVLFTKRSVANLTGNKSPKMKGILIKNEPKHRYLGLILDRKLLLHHHINQLQNRIRNV
AAGLNWIIGTKSKLSPQSKILLYKQIIAPIWQYALPLWGALTSNTQFQRIEAAQSKLIRKILKAGRYTRNQVLRDAYNIK
SINEIYSEASNRLATSLASHPNTEARKILMDPVTPNRLEMPRYLDQLNRFFLPLRQQLQQQNQLNTHQPALPTLISYEQQ
LLSQQASIKARQQDEEREQNKRLKIEQDPHYRPSIGWVNAMSYKLRHGITTRWEMADKIKYEPEYIQRLIMSPLLPSEIP
PPTPDQELDARLSTLKTQIINDLDLNLNHETNLAEGDSRTRFLPNSSSPILQAPQIPCINLVEDHPLGNPAIADIWKSTP
EI
>Jockey-9_DPer_pol#LINE/Jockey 1010-4429  [Drosophila persimilis]
MQMTLPMPRHNYMRILSSNTSAESAPTIHCITQNDGTIKIAFWNAGGVKNKIKELEMFMDREGLHVMMVIETRCKDINID
GYVTYYAKNPTNRRRGGIATLVRTDVKHTALQPINSEKIQCAPVSLLPDDGSDRGTTVLAPLYCPPSYRWTKKEFHQLFT
VFDITTSGSPNNKYIICGDWNAKHPWWGNFRSCQRGRELFEATQLRKKHNVLATGAATHYPYDRRKTPSAIDFAITSGVQ
KNQVMIHASMDLDSDHLPMVIHLYKPGQHNSSNKPTHISRLLPKGANKLKFQEYLEQNIHLNTEVNSGQDIDDAVDIFTK
NITDAAAIASKKCPQPNTKAYYRQHAILDGPTRQLLEEKQEKKRVFLALRTTESRKLYRKAQNKLSKALAATKTEKINGK
LRAISSTDGHNLAKLWQITKLIKKQPIPNWSVKTNDDEQIRWTRSTLEKAEAFANHMEERLTPLHTSTATERTKIIEELT
RQKRTMQDDNAANELQHKKHFTKPITLEELQKEIRLLKTKKAPGEDNIDNRLIKLLPKKANLYLLLIFNSILRIGHYPRI
WKHAEIVMIPKPKKNPSHMKSYRPISLLSGLSKVFERLLLKRLLSEEAFHKAIPDHQFGFRKEHGAEQQLTRVTQFILRA
YEEKQYCSAVFIDVAEAFDRVWHEGLLSKLIKILPLRLYTILENYLSGRTFAIKCNDGIKSRTGRITAGVPQGSVLGPIL
YTIFSSDMPLPALTHRSLHTNPGPKKMLLSTYADDTAILSMGDYPAMAVQRNNNYLTQLVIWAKKWSITINPIKTAHVIF
SKRRVQINNIPIKIDGKQVPVKKSTIYLGVKIDSGLTMSAHVTQLRIKMWARAKKLNWLIGAGSKLAKKCKMLMIRQLIA
PLWQYTLPVWGALCSNTQIKRIQGPYNKLIRCSLKAGRYARNEALRARYDLLTVEELFQKASGRYAIALATHTNPEARNL
VANPFVPTRLLRPRYLNQITNHFIPLQAQANITQQQKQSLTTSTQHAPRETTNQLPTLLRIQEEAKEKQETARKELQRAK
QMEERARRPASRYCESVINVIKRRYANGQYTREEAIRQVEGQNLAVQRLVIPDYTPATIVISDEIPNGPPSTAIDTAALV
ITISDEDSTNHLQAQLQPQE
>Jockey-14_DBp_pol#LINE/Jockey 1839-4520  [Drosophila bipectinata]
MQALRISMWNANGVSRHKLELSQFLTENHIDVMLLVETHLTSKYNFHIRGYTIYRTDHPDGKAHGGTGVLIRERIKHHFH
KRFATNFLQATSIQIQSSNGILSIAAVYCPPRFSISEGQFMDFYNSLGDRFIAAGDYNAKHTHWGSRLVTPKGRQLYNAI
INVKNKLDYVSPGSPTYWPTDSRKLPDLIDFAVTKNIPRNLISAKAVSDLSSDHSPVLLTLLQSPEITEHPFSLTTPKTN
WLKYKKYVSAHIELAPEFNMESDIDYTTSALEEVLVAAAKISTPHGKDVDRNKYFKSNQQIEQLVREKRRTRRDWQNSRS
PASKQRLKEATRSLDQALHQQEENAQLRYIQNLSPTSTKYPLWRAHPNLSAPIETTTPIRNSSGCWARSDEDRAETFATH
LQSVFQPNPASNSFLLPEIQPESSPQPAAPSFRPNEIEKVIRGLKPKKAPGGDLLTPKMLIELPKCAIEVVCKLFNGIIN
LGYFPKKWKKSIIIMIPKPGKDHTIPSSYRPISLLSCLSKLFEKCLLTRIIPHLEACNIIPAHQFGFRRNHGTIEQVNRL
TSEIRSAFEQREYCSAIFLDVSQAFDRVWLIGLMHKIKTYLPTYTHKLLESYLYNRVFSVRCNAATSGDYTIEAGVPQGS
ALGPCLYVLYTADIPTSAQLTTSTFADDTAILSRSRCPTQATTQLANHLTIVERWLSDWRIKINEQKCKHITFTLNRQTC
PPLLLNGMQIPQANEVTYLGVHLDRRLTWRKHIECKKMHLKLKASSLHWIINSRSPLCLDYKLLLYNSVLKPIWTYGSQL
WGNASSSNIDIIQRAQSKILRTITGAPWYVRNENIHRDLGILAVKDEIQKQKESYKEKLSSHPNFLARGLTRVSSVSRLR
RNDLPTQQSIFRAV
>Jockey_Ele2_pol#LINE/Jockey 1517-4198  [Aedes aegypti]
MCTMDNTTSLNILNWNSRSIRNKESEFFNLLDNQNIDIAVVTETWLRPDISIYHHDYTCTRLDRSSSEATRGGGVAIFIR
KGIKFTQSGGLNTNVIEALQVTVHTDATPIHLVAAYFPGSSNLSTLNKFKRDLRTITGFSEPFFVIGDFNARHRYWNCQK
MNKAGEILFREYETSDFFIHFPAGFTRMAPNGRSTSTLDLVLSGNSMDMSVPETIQDLSSDHFPVMFTINADTPFKNEFR
QYRNYKRANWTVYVNSVSRSLDLTSDVINNLDTEDKIDTAIETLVTTLVEAERVSVPVVNCNPQKRDLPDRIKLLIRLRN
VRRRQYCRTRDPLLRTIVENLNLQIRNESATYKFRNFGTTIRNLANGSSKFWKISKNLRNKIKYQPPLRCGNRLMVSDAE
KANTLAEHFASSHNNQLRSDPETTSEVHRAMEDLESHALHNIDVATFTKPSEIKKIIQRLKSKKAPGQDGIRNAMLKRLP
RKGLVYLTKVFNACLKLTYFPEKWKHANVVAIPKANKDVTLPTNYRPISLLSSLSKILERLILNRLNRHLEANPVVPNEQ
FGFKNGHSTNHQLARITRLVKQGFSAKKSSGMILLDVEKAYDSVWQEAIIFKLQKANCPLYLVKLIKSFLLGRSFAVSVN
GCTSGVHRIPCGVPQGSVLSPTLYNIFTSDVLIVDGVTYAFFADDTAFLATDDDPKIVTCKLQHAQNKLQEFQHKWRIKT
NATKSQAIFFTRRRSPRFLPTAEINVNGSNIPWKAEVEYLGLTLDQKLLFDKHINRAINKANCLSRSLYSLINRRSPLQI
ANKLLLYKCVFRPVLTYGCPVWGNCALSHLRRLQVKQNKLLKMMLDLSPWYCTEEVHEIAEIETIFRFVEKAAERFRLSC
EMSNNPLIVAIFP
>Jockey-N5_CQ_gag#LINE/Jockey 115-1569  [Culex quinquefasciatus]
MPKRGARHGNSSAAPGTSRNPSPGRITKNNPANSQIKPSTAATALEGIDKTKLHPHYRSPYQLRVKTAKAGRQASGVPSV
TPVPTRNEFEPLSGDDEDNEDDCSTSSSDDDDDPARGSKKAETSKTAAKERRPPPIFVVDTLADHVDELLEGQTYCLKIG
KKNVQVITLLRANYDKVLMVLKTHNVKYFTFDPAETVPVKIVLQGYTDRPVEDLAGHLADVNVHPRDIKVLSRTTTVTGT
HVLYLLYFDRGTVKLQDLRRKKTLDGFWVTWRYFSKNSTDAAQCHRCQKFGHGSRNCNLPPRCVKCGEMHFTEKCKLPQK
ARLSESDAQQHRSRVKCANCDGNHTANFRGCAARKAYLEEQAKKKKKLPATRPPPRLSPTVPVAGQGAADRITPAIPPGW
GGSYASVTAASGTVPEQAAVSGDDLFTLPEFFALAGEMLTRFRACRNKAEQFMALGELMIKYVIQRISCLVQRCSSASTD
KIIL
>Jockey-8_DYa_gag#LINE/Jockey 358-2070  [Drosophila yakuba]
MEDINFSGPQANCSVTDQQSMEQIAGATPAELRTQLLNEFNHKWSISEANKFPTATIACTTTAVTFTLASSMTTSSVTTS
LTGGVTSVGNMIVDESSDSTSCPFQPSYVSVAPVKKKNHNSVTKTIKKGKAQTVPVAKALPKSATSSNRFSVLAQDEMEI
DNLAAAHTETVAQTQAASNPTSRTDQSQTTNNPLKTKRPSPTCVPSCNNIDALDQALCAVISLSSYSFKMSRSGVTRILT
ADPAAYRAAVKVLTDNNCQFWHHQLDEEKPFRLVVRKINPTVGTERVKNAFIDYGHEVLNIHCPRKPDWSNASPSQDTLE
DIRTRQACFFVNLKKAPNNMDALKISKIGPHNVIVERARKNKELVQCFRCQDFGHTKNYCLKRPVCGKCGGEHPTNHKDC
NIISPEACKCANCGEDHPASYKGCKVRQQKMKALKPEPRFPPLTTANEHLSSIRQNFSAAPARDRFSQAQGIQRVPTFAD
ILREPRNDSQIPLMTTRNLGRTQHVPQRDLPTNYSNSSEHLPVNANRINKLEDALVSLSSKVEQLSTLFAQSAESINSLS
ILITKLLVKLT
>Jockey-4_DPer_pol#LINE/Jockey 2000-4720  [Drosophila persimilis]
MNKLQLKIGLWNARGLVKNIEELRLFLNANKIDVMLITETHMRPGLRAFVPGYDQYYADHPSGTSKSGSALFIRSSIAHA
QNEPTSRINIQVASVSVPTNVGCIKISSIYLPPNQPWSTTDFEQLFLSLGNRFIAGGDFNAKHPWWGNVRSCCRGKRLQE
AIVSSTCEILATGEATFFSYNTRLTPSALDFFIVNGIAQNKLSVEIKYELSSDHLPIVASVHHSPQIKTMKQQILPRGSC
VEVFQAELDSRINLNTEIKSPDDIEDAISIFMRNVILAASSAAPVNQCSPSQRRQDTLPPSAVALLRLKRRVRREYARTG
DTRVHQIYLRLSNRLQKVLAKVKQTSIDNILEKAGPDASFNYTLWKLTSRFKRVVMPKSPIKNPAGGWCYSSQQKADIFA
DSLEQRFKPFNLTSAVTRRAVELQLEMPFQMSLPASPVTFQEVVQQIKKLKAKKSPGEDLLDNRTLKLLPKKALLFIVLL
LNSILRIGHFPTCWKTALISMVPKPEKQHTEVDGYRPISLLSALGKMTERMILNRIMQLEPVKQRIPKWQFGFRKGHGTP
EQLHRVVNFALDAMEQKMYSVAVFMDIQQAFDRVWHDGLLFKLRNILPPQLFQLVSSFLMDRSFSVVVNGAKSSKRPICA
GVPQGSVLGPTLYTLYTADMPSSRVITGLDEDDVLIATYADDTAVLTRSPSINLATEALQQYVSSFEVWAQKWNIGINSS
KCANVTFATRTLSCGGINMLGSTLTHKSSYKYLGVVLDRSLNFKTHTTMVRQSVMAKAGKMAWLLAPRNKLSLYSKVTIY
KSILSPIWKYALQVYGIAAKTNLNKIRVAQSKILRRICNAPWYMRNSDIERDLKVPKVGDVIQLHAARYLQRLGGHPNAL
ARRLINPPRKRRLKRCHPLDLPTRSLL
>Jockey-4_DF_gag#LINE/Jockey 196-1920  [Drosophila ficusphila]
MPAGKSLISATGKPTSQSRVQQQQKQDERRLSSVRNNAYVAIVSETVSNEHATTKAMSLTASERARSLSPALLSSSSAAM
TQSWSSQCPSPLSPLIALTTSALALTSTVPSLTTVVSTTTTTTSTSVANLWPILSSQLKCVSAASLPQTTLVQTGIDRYV
QIKRKLSPQKTNANLPKVSKTSGNNNKATSENRFSILGDLGEDEGQPPQPTKDVKPPPIYIREHNCSELINNLKQKIGPN
NFYVTNLKRGNISETKLQIKNESNYRTVTNFLDHVPVNYYTYQLKSSKGLQVVVKGIESTVPVADIAEGLKEQGFDVKHV
TNIINRAKIPQPLFKIELAPETAPLKKNAVHPIYKLQYLLHRRITVEEPHKRNGPVQCTNCQEFGHTRSYCTLRSVCVAC
GDLHCIDACLRNKEDPATRKCSNCGGNHTANYRGCPIYKELKTRLTQRRSKPTTVQHVAQPNYFAPSVTTPGVSFARALR
YSGASPVPVSLXQPEVVHSLQPIPNRKDDSLPEQNTQRTTQPTTQQNQLPPPPAHSGLEHTLATLTKIMLSIQSTLQDLT
RNQNLLLELLIKQSK
>Jockey-5_DPer_pol#LINE/Jockey 2177-4893 via tfasty with Helena_Ds_pol, 2 frameshifts.  [Drosophila persimilis]
MNPLKVLIWNANGISRKAKEVELFAHKNSVDILLLTEIRIKRGAAVKIHGYAFYPAFKPSRNNNSVGGVAVLVKTSLRHF
PQRVIETRSMQMSAVKVATGLGDVEFSAIYCPPRVRIEERHYIDALRACGQRYLVGGDWNARHWLWGDTYNSPRGRELAE
AISATGAKILATGSPTRYPYVLNHTPSCIDFAVHHGIPDSRATISQSWDLDSDHLALVISIKTDGIIENPSPHLVTKHTD
LLAFRQHLERSIQLNVSLNSEEDIEMAVDNITESIHMAAAASTPSHPPTSAAYGIVLTREARELLSQKRRLRRRAIRSQD
PWDRILWNRAAKQLRNTLRELRSNFFEQKLASMDYTVDAGYSLWKTTKSLKRQPFRQIPIRCPNGELARNEEEQANSFAH
HLGDRFTHYQFATEAQYKETKDSLQTPLQMALPIKPARAEEIVEVIKSLPRKKAPGIDRVCNSTLKALPTRAILYIVLIF
NAMLRMQFFPKQWKIATILMIHKPGKPEDDPESYRPISLLSSLSKVWERLLANRLGGIIKECGILPDHQFGFREGHGTVE
QVHRLAGHILQAYDDLEYCNAVFIDMQQAFDRVWHIGLLSKIKKLFPAPYYGVLRSYLEGRQFMVRFRNTHSTPCQMRAG
VPQGSVLGPLLYSILYTADLPSPSEQHMEAPRKALLATYADDIALLYSSKCRLEAADGLQEYLYSLAAWCKRWNLKVNPL
KTTNPCFTLKALIDHTPPIKLEGVTLDQPEQAKYLGITLDKRLTFGPHLKATARKCGQRMQQLRWLINRRSTMSLRAKRA
VYVHCVAPIWLYGVQIWGIAAKSNYKRIQVLQNRAMRQITNCPWYVRGSTLHRDLNLHTVEEQIGRHTSRYSDRPIRHHS
MLARRLLPARPLRRLKRLGFAKTIG
>Jockey-8_CQ_pol#LINE/Jockey 1371-4055  [Culex quinquefasciatus]
IFTFTSLTKLKVLNWNGRSVPKKALELSEFIVSQKIDVAVLTETWLQGNVSFFIDGYSVVRLDRPTDAAERGGGVALLVK
RGIGFKPMDNLRTKVIEAVGVRVQTEGDPINIIAAYFPGGRSKEDRVNFKRDIGTLTRQSGAYFIVGDLNSRHRMWNCTR
ANQTGNILMNLFRTSDFFIHAPTTPTYVPRGRARPSVIDLVLSNNRVNMSVPKVHQELSSDHLPVTFEIDCIIQAETQAK
RVRCYDRADWVRFQRDVGGKLDXTVESLNNIQTTAEIDASVRRFTSAVLEAEDVAVPWAEYNPQKVVLPDGLRLLITLRN
TRRRQFIRSRDPVLGLIVDTLNQRIQKECSKLKYKNFGDTVRDIANGHKKFWKISKLVRNKVKHNPPFRIDDGLVISPAE
KARVLAESFAKAHDNTLPGDPSVNDEVARSMSVVAEANESNDDWSTYTKPSEIKAIFRKLKNRKAPGQDGLRNITLKHLP
RKGLIYLTKIYNACLKLSYFPAAWKHALVVAVPKPNKDITQPGNYRPISLLSTLSKVLERIVLARMNXHLDNNRIVPDEQ
FGFRRAHSTNHQLVRIAQAVKKGFDSKKSTGMLMLDVEKAYDTVWQEAIVHKLVVANFPLYLVKMLHSFLKGRSFQVNVN
GALSAIHGIPCGVPQGSVLSPTLYNIFTADVLMIDGVSYAFFADDTGFFATDNDPKIVTIKLQAAQNRLEEFQQKWRIKI
NPSKTQAIFFTRRRAPKYLPSSKVKVCGLEVDWSKEAKYLGFVLDTGLRYDKHIDQTLKKCKNLTKALYSLVNRRSRLQL
HNKLLLYKCVFRAVLTYGSPTWKTCAATHRKKLQRMQNKLLKMIYNLDPWHPTDDLHQLAELETIDQFIDRLFQKFRTSC
QMSDNPLIEAILPL
>Jockey-7_DF_gag#LINE/Jockey 239-1975  [Drosophila ficusphila]
MNPNEVRAQRQRKQDERRLSLQKSNAYFSFVSTAEAPTTKASAVVDQPRSLTPTPSNELKPILNXRARSLSPYMSATMQS
GVSDKCISPLPGPASPQLPTCLATVTSTVTSLATVNAMTTTTSVSSACPIQSSVLPAVSANLSTAASAAPSEASTKKQGP
SIQTGMDRYINIKRKLSPQGTKMGNAAKINRAFPSQGTVQNSNTANRFQLLADTSDEIASTVLDTDKKKPRPPPLYIREK
NSNNLVNIIIDLIGKDSFHVIPLTKGEIHETKVQVKSEESFRKLTELLDAKKKNYYTYQLKSSKGQQVVIKGIEPDVSTA
EVEQALKDKGFNVKTVINIRNRNKQPQPLFKVELAPDSKALKKNEVHPIYNLQFLMHRRITVEEPHKRNGPVQCANCQEY
GHTKSYCTLRSVCVACGGLHTSAKCELKNEPNSKKCSNCGGDHTANYRGCPVYKELKSRINQRVSTARSHHTPLIPSKLT
PEVFFSSAARSSLGSSTTNKNVSFASVLKSGHASPAYNVQPPPSVSHQLAEHTENRMETMMLSLQQSMDEFISFMRTTMQ
SMLTNQNILIQMLQNTLSK
>L1-12_XT_pol#LINE/L1 1676-5413  [Xenopus (silurana) tropicalis]
MATLKVLSWNVRGLGNAIKRRLVLDFIRRNKPQIIMLQETHLVGSKILALKRPWIGSTYHSLYSSYSRGVSILICKTCPF
VTETIISDRNGKYIILHGTIQGKKLTIVNVYIPPPFAEEPLREVMNKILTLPMAPILLMGDFNAVIDAKIDKLNPPRVNT
PAFNRWISGFQLTDLWRVRNPGVKQYTCYSPGSNNMSRIDLALGCEEMNKKVQKVEILPRGISDHSPIVTTILISPTPAD
RIWRLSPYWASHTQLNETIHNSIETFLETNKDEVPPDVTWDAFKAYIRGVFISNIKALETNLRAEIIMKSQKVHETEAAY
IAHPDTQTQQAWTESQRDLNLAQIELTKKHMLYQKAGVFEHGDKNGKLLALLSKDNSTTMLIPAIKLANGEITSSPEEIN
KRFTEFYSDLYTSKLQVSPTEIQDFLRDIDIPKLDIQTSQYLATEITIAEVEAAIGASPSGKTPGTDGIPMEWYKQHTKL
LAPLLVKLYNGVKEGKPLPNSMKETLIVLILKPGKDPLDCSSYRPISLINADAKILAKILATRIAQNLSKVISPDQTGFM
PGRTTDINIRRLFTNISIKHDNPGSRLVASLDNMKAFDSVEWEYLWATMKRVRIHPTYINWVKALYHLPVAKVRTNTKLS
TPLTISRGTRQGCPLSPLLFALAMEPMACRIKAQNGIEGLKLGPNKEIISMYADDTLIYLPNSEQALEMVLQVINSHTNY
SGLKINWEKSVLFPIDPRPPDAPTQTKGLQWVESFKYLGIWIHANLNKFEELNIHPILKLIEKKTELWANLPLSLIGRIN
LFKMVILPKLTYIFRQAPTVLHKSIFAKLKSLMTTLYWNHSPPRIALTTLQLPTNQGGLAAPNLFLYYLAAQLTVARNWT
VPTLTNAATILEAQVIGSLEELKNLLYRGTKYTKKASPLMKATVRAWQTANSFYPKPQQYYSEYTPLWHNPHLKHFRSIP
DPQLWAQYNIKYLADIMENGTILTYQELKQKYLLPNRMLFRYLQLRHAAEAQFGXMPIDTTPRQTEIRTHRETLKKPLSS
FYAQLIQVGSTSLNRLYTKWQNDIPQITTEQWEDILDSAFEGVISSKDKMTQLNYLHRTYLTPQRLHNMNPNISQNCPRC
QHAPANFIHMTWECPKIKPFWGKVIQLIKEKTDITLPMDPKITLLNQVEEISPRRAQRTLLSILCMYAKKSIAIHWKSSG
APSIHSWEQLIEKAIPLYKLTYMRRGCPDKFYKVWEPWLDLDPTVD
>L1-11_XT_pol#LINE/L1 1697-5425  [Xenopus (silurana) tropicalis]
MAIAKIISWNVRGMGNAIKRRLVFDFLKKVKPQIIMLQETHLTGNKTLALKKAWIGPTYHSIXSNYSRGVSILISKSCPF
TTKKVILDGEGKFVILHGAINGKTITIANIYIPPPFQDETLYAIMGKIMSLPPAPILLMGDFNAITDANLDKLSAPKSTN
QAFVRWVSTYGLIDLWRSRNPGEKQFTCYSAGYNSLSRIDLALGCTEINKQVQKVEILTRGISDHSPVLLTLTTSPKPAD
RIWRLSPYWANHEAMAENIQNCIDTYLATNLQDTPPDTTWDALKAYIRGEFISNIKAHNLNIEAEISHKSQIVKETEAKY
VSDPTDNNKREWQQCQEALNIAQLELTKKHILFQKANIFEHGDKTGKLLAIISRDDTISTSISAIKLPNGQITSSPEEIN
QAFKNFYSELYTTKLQATPENLHLYLDSLQLPTIPPIATQQIAQDITPSEIELAIAALPSGKTPGLDGMPGEWYKRHAKK
LAPTLAQLYNGIQNGNALPQSMRETLIVLILKPGKDPLLCSSYRPISLINVDAKILAKVLANRLTKYITGLISPDQTGFM
PGRSTDTNIRRLFTNLSIKHDNGGERIVVSLDNEKAFDSVEWEYLWATLKTMGIPPTFIAWIQALYTSPIAKVRTNATLS
NFFPVSRGTRQGCPLSPLLFALAMEPLASRLKLTQEVEGLKLGNLTELVSMYADDTLLYLANPHQALSSALDIINNHTSF
SGLKINWTKSVILPIDTLPNPPNQTNQLKWVNSFKYLGVWIHGDLTKYTELNINPIMRYLENKTETWRRLPLTLTGRINL
FKMIVIPKLTYIYRQSPITIPQTTFRKLKSLMVSLFWNGEQPRISLQTLQLPTTGGGLAAPNPYMYYLASQLVTAWRWTS
PSLTNAATLLEIQIMGSQEELQNLLYRGTKSTKKATQPMRATVSAWKKASQTFPKAQPHCSQYTPLWHNPNLEQFQTIPD
PKIWTRHNIKYISDIMPQGTLLXFQELKQTFSLPNTMLFRYLQLRHATGTQFGGQAVDTTPRNIETLTHIEDLKKPLSVF
YAQLMRASSTNLTKLXEKWQRDIPQLTPDQWEDILESTFEGIISSRDRLTQLKYLHRTYMTPQRLHKMHPDLGQECPRCG
HSPADFLHMVWSCPRSQRFWGKVANTIRDRTNLVLQLDPTVTLLNQVEDLSPKRAERTLLLILCMYAKKTIALYWKSPEG
PRVAAWESMINKAIPLYKLTYIRRGCPQKFDKIWSSWIDTEPS
>L1-13_DR_gag#LINE/L1 163-1050 [Danio rerio]
MMSKNKSAANAPPTTRTSVASKLATMATAAKSEETQEDDNGVTMSQLVAELTKQRTSIKEDISALIQESIVSLQTSVNAL
TETMASFQSRLCATETLASENFSALAAAEKTIKALKEQNTTLLDRVDDLENRSRRANLRILNIPENSEKGQPTVKFVSEM
LMEIMGEEVFEKPPELERAHRSLGPKPQDGRPPRPLVVCFHRFQEKEKALRWARQNEVKYKGSTLRIYPDISADLARKRA
MFKDVKQLLYQKKVRFQLLHPARLRVHYEEQTFLFDTPEKAQQFFDQRIATHDNS
>L1-14_CPa_gag#LINE/L1 393-1694 [Carica papaya]
MIQNRRGRALVLSDEREKSTRRIFIPDGYEAGGWWRFMKAISELSEIPLVNPFKLQKKVASPTPMVNNAMFSSPVCCPTC
KTQIQVLLVSPEKKTYATILQCNDPARTRMQENPPDPKRKPKRLEIQIASDKRTNSATTKSCQRQNQKIKSTKSNGTFLT
GFRAPKDNHKKPRFFWAEKGKWTNQAGPSKPNLNPLRPVKKIKKVKREWRKKRVLPSVAQNTNTNFKTQTPAHSVMAVHS
EGIFTDNEETSPSSNQPNATQLHWDMAASVFSSNDWSPEPSFFLRPAVNHEEEHIHINGTELVTIHTEPESDPSPLQTLK
DTSLAELINSLDHILKGNHEGDIHLYSEWINKNIFCVSKFLGAPLFGYEKEIQLLLADMEVNKNEENKSIMLLEKGRKKQ
KDGSSRELRRLQTSINYDRRNKKNRGNGSISISQ
>L1-13_XT_gag#LINE/L1 149-1084  [Xenopus (silurana) tropicalis]
MGQHKAHKRASEAAARLEKYARETNQNGADSEQAANSPDQTVSTADNAAPARTNTTPGATPHSTEPTLHDVMAEIRAANS
SCTSLINTKTEEIKIDLSIIKADLQKLRERTTAVESRVSNLEDSCRDLPNQYRNLQKQLADCLSKNDDLENRLRRSNLRF
VGFPERAEGNTPESFLETWLKETFGAAQLSSMFSIERAHRVPTRQSPPGAPPRPLIAKLLNARDRDKILSLARTQGPLRF
QASTISIFADYSMEVQRQRAGFQSCKARLREAGLPYAMLYPARLRVQADGRFTFFTAPQELNTWLDXRGIRP
>L1-10_XT_pol#LINE/L1 1863-5594  [Xenopus (silurana) tropicalis]
MKGSLKLLSWNIRGLNSKFKRALMFDYVKKYVPDLLLLQETHLVGQRLMALKRPWVAHAYHATFSSHARGVSVLIRKGIP
MEILDLITDHYGRFILISCVLFNQPLTLASVYIPPPFNQDLLDNMMSKLMTFPPAPMLLMGDYNAILDPALDKLTPGPQP
TPKFPIWAQAMNLTDLWRWKYPDQKVYSCFSATYNTLSRIDIAFASSDLLPRVTSVEYLPRAISDHSPIMVQLNLLQDPT
KSLWRLSPLWLTHENVKEANDSALKEFWELNPGTAPTDIVWEAGKATLRGALTSAITGVRKKAKEELEERQNKLMEAEKQ
FITHTGPDTLRTFRAAQTALEETRIKLTQKKLLYATQRTFDQGEKNGKILAYLSKAQAPSNTITKITSMNGDIVTEAAHI
TNIFAQYYQQLYTTKANYTPLQLSNYLDTIPIPRLSPLLRAQLNSPITLEEVQEAITSLQPNKTPGPDGFPADWYKASTE
LISPWLHKTLLDATEKNKLPRSFNTALIVVIPKEGKDPLECGSYRPISLLNVDAKIFAKILSNRLKLVIEELIEPDQTGF
MPNRSTNINIRRLFTNIHANHTNKGSRVIVSLDAAKAFDSVEWPYLLKLLERFGLGAQFIKWVGMLYEAPTARVNVNRHL
SPEFSLSRGTRQGCPLSPLLFALAIEPLAILIRHSPAITGLKLGAVEERISLYADDVLLYLDSPGASLQTVLRIVKHFGY
FSGLRINWDKSSVFPIDPNMDPNMFPPTPLQWVDTFKYLGIQIRKELSDFIPNNLDPILKAMKEKLLVWANLPLSIWGRI
NLLKMIFLPKFLYIFHNSPISIPPKFFTSLDKTQTAFLWANKPPRFSRAKLRAPITEGGLGLPHWQFYFLAAQVYYVQWW
FSPDLTNPNVPLQATLASSMESLKYIPFRKLSDIQTNHPVIVTPYKAWQKILKLYKLKPPILSPGLPLWGNSYLPNFQQI
APYRVWPHWGIRTLGDVTNAGALLPRNQIKHTDTGELLPWFSYLQLQQAFRHQFQRTIVPFVLTKLETTLRNPSSKKLIT
TLYSLLLSTLQSPFLTAQKAWRQDIPELDNEDWEEATDRAYDYLISTRDRLIQFKIIHKLHLTPLRLYRMGIRDSSQCPK
CGAPEANYFHLMWSCPQIHHFWNQVLDHIQNTTSLPKILNPKVCLLGIVDDIIPKSASRILYRTLLFYARKTILFQWMAH
SPPTIASWLNLLKALLPLIQLTYIARGCPQKYDKVWGTWVEAME
>L1-8_XT_pol#LINE/L1 2145-5873  [Xenopus (silurana) tropicalis]
MADITLISWNIRGLNDKFKRAQMFNYLKRHPPSILLLQETHLTGQKILALKRRWVGHAYHSTYSTYSRGVSILVKRSIPF
NLIAVKTDHYGRFIIVHCTIANFPLIIVNLYIPPPFTITTLDIIGKKLADLPTVPTCYMGDFNALMNPQLDKLNPPFPTG
NKLMLWAKALGLIDAWRWKNPNQKVYSCHSTTHHSLTRIDLALVTPELLPKITKTQYLPRALSDHSPLSLNLNILGTPQA
NLWRLSPIWLKNNTVLESATTAVTEYWETNEGSAPPQIVWDASKAYMRGQLSSAIKKARLESKAQVVEAEKDQEEAESAY
AANPNPTNYSKLVDTHHTLAREQTLLTRKAQLYTHQHIFETGDRSGRTLAYLAKIQAPSTAIPLIVDSDGTHHSTPQEIA
EAFGTYFKTLYTTRATYSEAEIQQHLSNIPIPTLTVTQRGTLDSPITKQELQQAINSLAPGKTPGPDGLPADLYKSLTDE
ITPHLLNTLTIATQNFSLPPSFMEAIIVLILKPQKNPHACNSYRPISLLNTDAKILAKILATRLAQVMPELIHPDQTGFM
TGKTTDINLRRLFFNLQTIHDNAGSRVVLSLDSAKAFDSVEWTYLWAVLSKFGFGPNFIKWIRMLYHKPTAKVKANGITS
NPFPLTRGTRQGCPLSPLLFALAIEPLAILIRQTTALEGWRLGPLEERVSLYADDLLVYLADAGPSLTTLANIITHFGKL
TGLQVNWDKSALMRVDPTPLPALPQDIPVMAVDSFKYLGIQIHLDLSTYIARNLDPIISSLNNILPIWSKLPLTLWGKVN
IFKMIYLPRFLYTFHNSPIHIPKSFFKATNQILMHFIWGGKTPRIAWKKLTPPTKEGGLGLPDLHLYYLASQLHYIKWWF
DPDPYNPNTNLQAVTVGSMEGLRHLPYRATTDHKNLPAVMATPRTAWNLALKMYPQHSPTLTPNIPLWANSRLPHFYKFP
DFLYWPHKQVRRLQDTLDGTTLGTYEFFKEKLAEPTLSQFRYFQFRQVFQAQFGGIDIQTTQTQFETALWSPTLTKPTST
LYKTLLQTTPSPFKTAHRKWVSSVPDLTEEDWEEATDRGYHYLFSVRDKLIQFKWLHQVYLTPIRLRSMGRNPDARCHRC
GMEEANFLHMAWSCPQIAKFWSEVMCVLADKLEFPKILTPQICILGILDELITTNYARTRYRTLLYYARKIIAMAWMGPE
PPTVQNWITLVNQVLPLIKLTLLARGSKKRGLRKFGAHGGRRA
>L1-8_XT_gag#LINE/L1 442-1338 L1-4_XT_gag 90% identical [Xenopus (silurana) tropicalis]
MGKHSQKQKPDAAARLERFARTEPQDSQSTTTGDSLPPSPHSPEITAETPQPTSSELLTAILESRTTTTTQLEEIKIDIS
LLRHDLQNIRERTTEAEARISTLEDTVTPLPNDIASIKQQLQQALDKSDDLENRLRRNNVRIVGLPEKTEGQHPEIFIES
WLKQTLGNETFSNAFVVERAHRVPTKPHPPGGPPRPLLLRMLNYRDRDSALKAARLKGPIIYNGNTVSLYPDFSPAVQKQ
RATYTAIKKRLREAQIPYSMLYPARLRIQDGDRVQFFNTPTEADEWLNHKNHRRSPPRN
>L1-9_Mad_pol#LINE/L1 2251-6389 via tfasty with OSLINE1_1_pol, 3 frameshifts. [Malus x domestica]
MILVFWNCRGLGSDTAVRALHGLIRNKRPSMIFLSETKMKDHRLDGVRRRMGFQNGFNVSPVGRAGGLSLWWDDSVEVQT
LFSSKHIIDVILRKGGDSNWVRITGVYGTPYREDKADFWEWMSSYFTPSDIPWLCAGDFNEFLWDHEKSGGVEVLYNRPR
YLETFMQATNLWDLDFNGPAFTWRGMRHGHLVEERIDRALINGLWQDLWPNSLVTHGTVMGSDHCPLIIQSDSESVRGRR
AFKFEAFWAKEDECDQVVSSCWNRPDPGEILVRWTKKINDCKSSLIRWSRNKFKKRGQLIQELLHQLQELQRDWRSNIDV
IKQKTQLVDELRAQEESYWMQRSRVKWLRDGDANTKFFHNSTLQRRRRNQIIKIKDELGNWVEQPGRVRKLVEDHFMQTF
TSGGARNWGSLLDCISPRVTEDMNQALLKPVSEDEIKAAIFKMGGLKAPGPDGFQGIFYQSFWEHVYADVCALVRELMQG
SSSPSTLNATHIVLIPKVPHPESVSQFRPISLCNYSYKVLSKVLANRLKVILPMLISPSQNAFVAGRQIQDNIGIAHEMF
HFLKGRTAKRKFEMGIKLDMQKAYDRVEWDFLDAVMERMGFSCMWRRLVMGCVSSVNFAVLLNGQPGDKFAPSRGLRQGD
PLSPYLFIILGEVLSCMIQAAVDDKRLEGVRIGVSGPIISHLFFADDTLFFLRAEVNYCWNLLSILERYCEASGQKVNLQ
KSSIYFGANVPKGVAANLGGILGVSVVDNPGTYLGVPAIWGRSKKRGLAYVKGRILGKLQGWKQSALSRAGREVLIKAVV
QAIPAYPMSIFKFPAVVCQELDALVARFWWGSHGEDRKIHWVSKEVLGLPKDMGGLGFRNFQEFNDALLAKQCWRLLTEP
NSLWARVIKARYFPHCSFWEAKKGARASWAWSSLLSGRELLASGSHWQIMGGEDVRVWVDRWLPSLPSGHPMPLGEVSVT
SNLRVSSLIDSSSRQWDFDFLRPFLSMADQRAIQETIIGDSRWKDRLVWAANRNGKYSVKSGYRWLQVRSIDVRDHRLPV
VRSISKNLWNCIWKLDVPPKIRHFLWVSLHLGLPTGKALFKRRLSPSPSCPLCRSADETVEHVFLRCPWVAAVWFGGALN
YKVDAAGIDSWALWLQAVFSSNWGSSADRKWFQAYVAFTCWFIWKARCDFVFNQVSINPSKVIFSLSTAFGNFLLAVSSV
GVARPVSGSREEAAVRWCPPSSPFVKINVDASWSKSSRMGFAGVVARQDGGRFRAAVRSSVLAPSSFVAESFAILRGCEL
GASLGFSSVIIESDSLQAISCLNGSLENGSWEAFPILARAQRLGSAFQNCRWSWVPRSANMAADVLASAGLTEMCDFVWV
DRPPSSLVHVLCNDGLPCPH
>L1-10_STu_pol#LINE/L1 2074-5708 via tfasty with L1-3_STu_pol, 5 frameshifts. [Solanum tuberosum]
MKLKILAWNVRGLNREEKRNLVRSRIQQEGADIIVLVETKLNGTVGSYIQQLGGNRWMGGVWMEALGTKGGMIIMWDKRA
WMGEEVESGSQMITCKLCGINQDLDWFITAVYASCDRNERRDLWEELGAMRSLCEGPWVVCGDFNTTTHKISIEKTNCVN
LSGAMSDFSSCINELELIDPPLFGAIYTWRGGDNYRNASRIDRFLYSFPWDEMFTQIRQSSLPSLGSDHNPILLTCGDGN
FKKSYFKFEKWWLNVEGFKEKVQEWWCSFIISGTPDYILATKLSMLKAKLKEWSKEHKVNWKARKSHILDQIGSLETLQE
SRPLNDDEQLVKAHLAMEYEEVARNEEIFWRQRSRVQWIKCGDKNTKFFHRMATAHKRLNTIDSLLINGELSSDPVAIKG
SIVDFYQDLYKESENWRPYLNLYEVQGISTEERNNLERVFEEEEVLAGIKMCAAEKAPGPDGYTMAFFQAFWETIKEELM
QTFHRFHSHHKFEKSFNATFVALIPKKVGANDLRDFRPISLISGVYKIIAKVLAERLKKVISRVVNNHQMAFIKGRQIMD
AALIASECIDTRIRGDVPGVMCKLDIEKAFDHLNWSFLLNTLRQMGFGRRWIKWIEFCIKTTRFSILINGEPAGFFPAER
GLRQGDPLSPFLFIIAMEGLGSLMRRAATNNWIKGFSIKNRNNEIMEVTHLLYADDTVVFCEAEQEQICYLRVILVIFEA
CSGLKINWRKSNIFPVKEVQQIQSLADILRCRIEELPTIYLGMPLGANHKAVNIWDGIIEKTEKRLALWKSQYLSLGGRV
VLINAVLDSLPTYVMSLFPIPGEVVEILDKLRRDFLWQGSKIEKSFNLVKWSAVQQSKSFGGLGVRNLKLHNKSLLIKWL
WRFTQENQSLWREIILHKYGPEGQWCTNKVTNTYGVGVWKSIRNLWMTLKLNTKVRVGRGDKILFWEEDWSGHGTLHSLF
PGLFSISLNTGCSIQEMWSPQGWNLTFRRPLNDWEIPWVVDFLKLIGNFPGTNTDSDKLIWRHHNDGIFTVNRVYKRGLS
VAAGRSTGPWNTIWKSVAPNKVKCFTWLVARKACLTHEALQKRGSIIASRCLLCKEALETNKHLFMHCKVTTQVWAMFTS
IAGINWIMPEHTADLLSCWIRRGGSKSQKRWWRTVPACIWWTIWKERNQRIFEGKESSILKIKWKVITSLGFWCKEQSIE
EEIQLVDFIGSL
>L1-9_STu_pol#LINE/L1 375-4007  [Solanum tuberosum]
MMNVKIISWNVRGLNCRDKRRIINSVFQEWKADVICLQETKLEGENGEAIRQVWGSRGVKYAQLEASGTRGGILMLWDSK
HWEGKVVEIGAYTLTCGFKSRNCDFEWHMTGVYAPNCNLERQEVWWEIGAVRGLFSGPWILGGDFNIVRYASEKKNCSRN
SIYMSEFSDMIEDMELIDPQLEGGNYTWTGGNNAEYGSRIDRIMYSTEWGGXFNNVKQELMPRVCSDHSPIALASGYWIY
TKSYFKFEGWWLETEGFNERVKEWWTTFEFEGRPDYILASKLKALKTKLKEWSSNTYGNLEKKKKELLNRITDFDNIQQD
RPLSDVEVIQKASLTKEFEDYAKKEEIAWRQRSRTLWIKQGDKNTKFFQRIANAHKRTNHIDKLVVEGDELTEATDIKRE
VVLFYKKLYCETENWRPAYNMYPCPVINREEQQDLQKPFEEDEVLKGLKACAIDKAPGPDGYTMGFFVKCWEILKGDVMA
TIRNFHSQEVFEKSLNATYIALVPKKNGAKELRDFRPISLIGSVYKLISKILTERLKKVMPKLVDTQQMAFLKGRQITDA
VLIANECLDSRVKDKIPGIMCKLDIEKAYDHVNWEYLLGILHSMGFGRKWIRWIRFCISTVKFSILINGSPEGFFPASRG
LRQGDPLSPFLFLLVMEGLNSMIKTAHRNDWIRGFNVVKEVNTRLEITHLQYADDTLIFCDAEDSQLKILRIVLILFESV
SGLHINWRKSHIFPINDVPRIQNLVDIXGGEIGQLPATYLGMPLGANSKSKEIWNGVVERCEKRLSRWKSQYLSRGGRLV
LINSVLDALPTYLMSVFPLPAKVEERIDALRRNFLWHGEKEYKGFHLVEWKTLLLSKKQGGLAIKNLRKQNKSLLMKWLW
RFPLEEQSLWGRVIQAKYGKEGPWKTKEVTSTYGTSLWRSIRNLWHGFYAKTECNVNNGRKIRFWEDDWLGNGSLKRLFP
DIHHLNQQQESTLYEVWSEHGWNLTYRRLMQDWEVERLAEFYGTLDQFLGFKEGEDTLKWKCHNKGLFTVSSAYRNMNQM
GSQVNFLPWKLIWKVKIPYKVVVFTWLVVKEVVLTQENLMKRGIQMCPRCCFCEQVAETINHLFLHCKVVGQLWNLFTSF
RGISWTVPGRTGQALESWNMEGSGSTDKSRWKIVPAVIWWTIWKERNSRNFDNKSSPLHKIKMNCIITFCYWCSSEYIDD
PVAIVDILGSL
>L1-14_STu_pol#LINE/L1 2062-5705 via tfasty with L1-15_STu_pol, 1 frameshift. [Solanum tuberosum]
MKVNIVSWNVRGLNDPGKRLMIKNMVHKWRADVYCFQESKLRGDIRETIKELWANRGVNFTQLEARGTKGGIIILWDSNI
WEGEVCEVGAYCITVRFRGKTQNFSWHLSGVYAPNNREEREEVWGELGAVRSLFNGPWVIAGDFNVVRFPSEKKNCNRIT
KAMEDFSDFIEDMELVDPPLIGGSFTWRKGDRHVTAARLDRFLFSEEWEISFKKIKQTIMPRVTSDHNPLLLECGNWERS
LSYFKFENWWLQTENFKERVKGWWDSEIFVGRPDYILACKMKALKVKLKEWSRTVQGNLGLQKQNILNQLYELDVIQEQR
CLSEDESYLRAVLTVEFEEVAKREEVAWRQRSRAIWLKEGDKNTKFFHRTANSRKRYNNIDSLLINGTNVTDPAMIREEI
TGFYQNLYRENEHWRPQFSPREQAVLNEEDNLLLQSQFGEQEIKECVFDCAGDKAPGPDGFTMAFFIHCWDVVKVEVIAA
IQNFHSQGYFEKSFNATFIALIPKKMGATELKDFRPISLISSVYKIISKVLTERLKKVMSKLVDTHQLAFIKGRQIMDAI
LIANECVDVRKITKVPGILCKLDIEKAYDHLNWDFMWYTLERMGFGNRWINWLKYCVRTVKFSVLINGTPSGFFPSERGL
RQGDPLSPFLFILAMGGLSDMLKTAQSNNMIRGFWTNDSDTRGLSISHLQYADDTLVFCGAEEEQLKHLRIIFILFEAVS
GLHINWGKSFVYPVNEVPEINRCLAGILGGKVGEMPTTYLGMPLGANSKSKNIWNAVVEKCEKKLVNWRSQYLSLGGRLT
LINSVLDAMPTYMMSLFPMPGSVLKKLESIRRNFLWQGNGEGGKKYHLVKWEVVINNKKEGGMGIKNLKVQNQSLLLKWL
WRFASVEQGLWKDVIISRYAMEDSWTTKEVRSPYGVGLWRTIRNLWPKIWRNSKIDIGNGRKTFFWNDVWVGQHSLKQLH
PEIYNLNQQKEATVAEVRDNQGWNLSFRRRLNDWEIDKLADFYKSLEQANNLDTNEDSLQWLRANNGKFTIKSAYRHLDR
PAEMLLPWPWKMIWKINVPHKVACFTWLVAREAVLTQDNLMKRGRQLCSRCFFCERETETTNHLFLHCRVTEKLWQVFFN
LRGISWSMPRHTSEALACWNREGNTSGHKERWKIVPACIWWTIWKERNQRCFENKSIPFQSLKLNCLITLYFWCNHVLPK
EVEAITHFLDSLGGV
>L1-24_ACar_pol#LINE/L1 2217-5981  [Anolis carolinensis]
MDRGNISRQLKFYSNNVNGLNSPSKRKEIMLQLRKGKFDVVALQETHISQRQCSHLINRSLGKEFFSSDIKKKRGVVLYI
KDNIPATLQFKDQEGRMLAVQIIIEQQKILVCNIYAPNGPQTKFVKELRAKITGSEFDHLIILGDFNGIMEMKKDTSKVT
KNKKAEKSRLIPQNFRKLKEEFDLKDIWRMNNLETKDYTFYSHRHRTWSRIDMIWLSNSLCTKVEEINILPRDRSDHSPL
LLRINHKTVRHRWRLDNNLLKKEEDIIRNKKLTREYFEINTIGETTDQVIWDAYKAVIRGHLIQQKIEKNKVKLQKLSKI
NEDLNNAERKLKENPTNIKLANQIRXLQNNKRSLEIEQTANQLKFIKQYNFENANKPGVWLARKIRKKKQQQLITKIKKE
KMILTKDKDIMQEFEEFYLNLYKEEDINPEKIVEYLGKQKLQKIXDYQREGLNKEITQEEIRKVLKTMKPNKAPGPDGFP
IYFYRILEDELLPWLMKIMNXALKERKIPESWTKADIITIPKDKGDELEVRNYRPISLLNTDYKIFTAILANRFKIFLNE
WIGIEQNGFLPDRNLKDNXRCIIDAIEYYELHHQKEVVLLSLDAEKAFDKLNWNFFKLLGRELDLGYYFLNALESIYNEQ
SARILINGQESKEIKISKGTRQGCPLSPLIFIFAIEILIRNVRQDDSLKGLKIRNQNFKIRAFADDIMCIIEEPRSQILQ
WLQKIENFGQLAGFYINKEKTKMLGKNLSKKNQLKIQEMTDIKIVXKLKYLGVWITTKNAKLLENNYLAKWNEIKKDLNQ
WQFLNISLLGRIAIIKMNVLPKLLYLFQNLPIIRNNKIFKDWNKMLAKFIWKNKKPRIKYTILTDLVKRGGFGLPNLQLY
FEASALQWVKDWATLENVNILTLEGMDLRRGWHAYIGYDKRKIEKNFGNHFIRSALIKIWEKYKLRFYSNKIPLWISPLE
AEQRNILGWTNWPKYKDILSKNKDGYKLKSQEEIKEKFPGISWFQYAQIKEQFNKDNKLGFSVADNLWDKIMTNRKKTVS
RIYXILLEWATETEEIKNCMIKWAINIGRPIKLIEWEEIWNKKLRYTYASDLKENWLKVFHRWYMTPKKLGLMYKNYDNR
CWKCKTQEGSYYHLWWLCEKSKKYWKMIHQVTQSILQKKFPLKPEYYLLGITDNESKXDKNDDILFTYCATAARMTFAKM
WKAEETPKKDLWXLKLEEIQNMDKLTFLLKDTNGKPTRRTNWSKLEEYIKKSDLQ
>L1-23_ACar_gag#LINE/L1 1248-2357  [Anolis carolinensis]
MNTPKSKVEKETKDWRTMTRRNSLNDXVNLKDILRELQKISDKQDTLQKEVQTIAANQEILQKEVQTIAANQEQQKKLLQ
EEMMELKKEMREELGSMKKELTKNSIDISELKMEKKKIDKSHSKIQKKVEGLEFKNTKLEKIQEKLEQSELEYQLRFRNV
QEETKENIKAVITQLISKLLYCTEQEANGQLDRVYRVXTHFAKKNRGIRDVIVHFVKKSTRDDVLRENASNPVFYKERKI
TILKEFSQSIMNKRKKYYFLTDELKRRNIRFRWEKFEGIMTTYNGEKFWLTSEEKARDFYKKLRKDCEPGIPEISPEDMK
NPTKPKKRRFDSPEEAEGATGCRSNDKEQEELTEDEEEEEEEEEGILADE
>L1-25_XT_pol#LINE/L1 2296-5622  [Xenopus (silurana) tropicalis]
MGDFNTVVDPDVDRLPTATHQSSHFKHWLEAHGLHDIWRHKHPTEKQYSCHSIGKGSLSRIDMALGSPDFIQWVTEASYL
PRALSDHAPLHLKIRTKIHPTHQLWRLSPLWLSNSVVAETCKTDYKLYWETNEGTSQSNTTWEASKAVARGSLISAIATV
RKANKTEMNEAEAAVTLAEKTYSENTTDHNHQLLISAQRELELKQTACTRKKLLYASQRAFDQGDKNGKTLAYLAKVNNP
TTMIARIKNNQGTYVTDPLDIAKVFAEYYQDLYTSRTACTEPDMEQLLQGISFPTLSNTESAYLDSPITLSEVADAIGGL
PPGKTPGLDGLPASWYRVMSEELTPRLHSTLLEAKVTGTLPPSFYAAIIVLILKEGKDPELCDSYRPISLINTDVKILAK
ILAQRLNKVITSIVHPDQTGFMPNKSTAINLRRLHTHLQIDHSNTGSRTVVSLDATKAFDSVEWPYLWKTLSKFGIGPTF
ISWIKLLYLSPVAQIRINNVSSKPFPLTRGTRQGCPLSPLLFALAIEPYALLIRQTPSIQGLKYGRLEEKIALYADDVLL
FLADHGDSLTNAINLADSLGAFSGLKINKTKSTLFSLEGPQMRDDIQGLKWVTEFRYLGIIISQDPTEYIAKNIDPIIHK
FKEISGLWEGLPLTIWGRVNLFKMIYLPKFLYALHHAPVWLPPQLFKRIDSILFPFIWAHKAPRINRRTLMAPQDNGGLA
LPHLQYYYYASQLWFLHSWFSQEMDNPLTVLLASCTESMEALRNAPYRKAXDTLGLPPVIKVPQKIWAITKTLFPKLMHL
PSPRSPLWRNSNFKHLLLLPDFQYWPKLGVRHLQDLLIEGIFPSLDQLKGKLDQANLEIYRYLQLRHAMISQFGSQVINV
AELPFETRLWDPNPKKLVSEXYKMLLPXLGIPFDTAKRKWDGDIPQLDDDKWAEVTXDLYSFLISTKDKMVQFKIIHRTY
ITPMRLKVMGKNQHASCPKCQMTETGFFHLIWTCPTIXKYWTXVTKYLNEQIPLPGILSPEVCLLGLIEDLVPLNKTRTL
LRSLYFYAKKVIAMKWMSPHPPDLHQWXQLVHSRLPLIKLTYLARGCPNKFENVWSPWLDAHSGENLRI
>L1-30_XT_gag#LINE/L1 149-1081  [Xenopus (silurana) tropicalis]
MGQNKAQKRASEAASRLEKFSRETRHTQDGGEETVTQPPPQRQPRGEPSTPQGDPRTSSATSPTEPTLSDLLAEIRASKE
SCTSLICSKTDEIKVELSIIKQDFQKLRERTTLLERRVSSLEDISNPMPDRLQQLXQSINTCAAKSDDLENRLRRNNLRF
LGFPERSEGNSPEKFIETWLMEQFGRESFSTAFAVERAHRIPTKAPIPGAPARPLIARLLNARDRDSTLSLARKKEQLTF
QDAKISIFGDFSAEIQKQRARFLESKRRLRDMGLQYAMLYPARLRVIENGTTHFFTNPQDLCSWIDARRNR
>L1-26_ACar_gag#LINE/L1 1206-2216  [Anolis carolinensis]
MAGAKPKMDNKITARRASEDVSMKDLLKEIQKLGERQENYQTEAQKRMEEYNXQMIEMRTEIKQEIGQLKEEVRKTFEDI
KELKQNSEKLEISQEKIRKKMENLENKNQKIEKLQERIEQRELESQLRFRNIQEEENENIREKIISMTADLLQKTTDKME
IEIDRCYRIQTNYSRKNKTARDVIANFTRKSARDEILIQNSKKPIYHKETKIVILKEIPLTMLNKRRNYFFLTEELKKHK
IRYRWEKTEGVMVTYRDERHWLTSVEKAKAFYKNLKKDLEHAASISPSVKKKKPKRQRQNSPEETVLGAGAGLQTTNVSD
GEEDEEELTNEDNQDGE
>L1-22_XT_gag#LINE/L1 31-924  [Xenopus (silurana) tropicalis]
MGPNKAQKKAAETAARLERFAREGRPAQNGADEQPVSPSPSIPGSPARTEEPSLTDLLLEIKANRDVCTTLITAKTEELK
VEFSILKHDIQKLRERTVEAEQRISSLENSYSPLPQQLQNLQQAVAQWQTKADDLENRLRRNNIRLLGFPERVEGPNPET
FLENWIRDTFQVTNLSSAFTIERAHRIPMRAPIPGAPPRALIARLLNAKDRDSLLAMARAKGHLTYENAKISLYPDFSQE
IQKQRSRFQEVKKRLRDQKLEYSMLYPARLRIQSNGTTHFFTTPQEASAWLDTANPQR
>L1-15_STu_pol#LINE/L1 2056-5670  [Solanum tuberosum]
MEYRGMNCARKREVIKNIMKNWKADVVCFQETKVEGEIENIVKEVWGNKWVNYAQLEASGTRGGIVIMWDKREWEGEISS
VGMYSVTCSFTGICQDFSWHLTGVYAPNDRVEREETWWEIGAARGLIAGPWVLCGDFNTVRYPSEKKNCNRINKGMTDFS
DFIEDMELVDPELSGGKYTWKKGDRHTTAARLDRILFSEEWEANFRNIRQHILHRVTSDHSPIMLQCGAWENAKSYFKFE
NWWLDIEGFNDKIKGWWNSFSFIGKPDYVLVAKLKALKEKLKEWSKTAQGNLGTQKQNVLKQLAELEEIQENRTLRPEEI
TSKTALISEFEDIAKREEIAWRQRSRAVWLEQGDRNTNFFHRTANAHRRMNTISKLKVRGENLTEPEEIQKEIVTYYEEL
YSEPEZWRPYLEMRNCPMIHEEENKLLLAPFEQQEILESIKACAGDKAPGPDGYSMAFFSQCWDIIKPDLVATVQQFHKA
ERFEKSINATFVALIPKKVGAEELTDFRPISLIGGVYKIIAKLLAERLKKVLHRLVDSQQMAFIKGRQIMDAVLIANECV
ESRQRSKCPGILCKLDIQKAYDHLNWNFLLLMMQRMGFGAKWIRWVKFCISTVKFSILVNRTPSGFFSSQRGLRQGDPLS
PFLFILAMEGLSNLIHTAKMKGWVRGFRVDSSAQNGLEITHLQYADDTLIFCEAMTEQMLILRVIFIIFEAVSGLHINWG
KSFIYPINEVAQVESLAGVLGGRVGELPTIYLGMPLGGKSKSIGIWNGVIEKCEKKLTNWKSQYLSRGGRLTMVNSVLDA
IPAYMMSVFPAPDNVIQRIDALRRNFFWQGNEDKKKFHLVKWEEVIKNKKEGGLGIRNMKKQNKSLMLKWLWKFMTGENM
LWREVIRAKYEMENRWMTKMVTTPYGCGIWRSIRNLWPLFLSRIRFQVGNGMKVSFWEDRWIAQRTLKQLFPDLYTLSLQ
QNATVAEMWTGQGWNLHLRRNLNDWEMGNIVAFHDTMAQFSNLTREEDKVVWKIGSKGVFSVKSAYKDLNQSNSNDRMEL
WPWRMIWRPKIPYKVNCFTWLLAKEAVLTQENIKKRKFQLCSRCYLCEEQAETVNHLFLHCKWTDQLWRIFSSLRKITWV
KPRNIAQLLNCWINIGNTTIKEERWRIVPACIWWTVWKERNQRCFEGKKNNLQNFKMNCIALYYFWCKQKVLVQAEELFD
VLDYL
>L1-14_XT_gag#LINE/L1 149-1180  [Xenopus (silurana) tropicalis]
MGKNRQTSRPSAATPATDPRIQDGAAAPSHHAAPAESAAATSTGETAAKRLERFARHPSPPLQPRGMSPPPEIAPDNRET
ASHAATPGQPTPSAEPTLTEILHIITNNHSTLITKVDEIHTDFAILKHDIQKIRERTGEAERRIGELEDLTNPIPGRIDS
VSKQLNALEAKADDLENRLRRNNIRILGMPEGAEGNAAETFVEKWLQSKFGEQAFSAAFAVERAHRIPGRPPPPGAPPRP
LIARLLNYKDRDAALTAARKAGELLHENHKISIYPDFSALIRKQRAQFTEVKRMLRQRQIPYAMLFPSRLRVVDNGKTQF
FESPETAISWIEGRPRDPPPHRQA
>L1-16_GMa_pol#LINE/L1 291-3301  L1-11_GM_pol near-identical [Glycine max]
MIILSYNSRGLGRGVKWAAVRRLIVKHKVDLVCLQETKRENFNKSICQAIWGDSTGHWDFVPSVQAAGGLLCMWNNSTFV
VERKEKGRSFLMLEGTCCSNNQKLIFVNVYAPCDLVGKKALWDELRQLKASNPSGMWCFLGDFNSIRSSQERISLSQRRA
DPYDIAAFNQWIDDMELQEIKCSGNSFTWIRPNGCVKSRLDRFLVSQNWLSLWPESCQTVLQRNLSDHCPSILQTNMVDW
GPKPFRVFDWWLQQKGYQKMVREAWKKDQQGGWGGIALKNKLKNLKSVIKQWSKAEGNINPKKVLNIQQKLNEVEDLAAH
RNLTDQEIKDRTLLQQELWNASNAFESLLRQKSRARWLKEGDYNTAYFHKYMNFRRAYNNIPGIFIYGEWIQQPDAVKNE
AANFFHNRFTEQMHSRPTLDGVHFKSISQRQREQLTVPFSDQEIKQAVWSCGGDKCPGPDGLNFNFIKEFWDVLNPEFRR
FVDEFYAHESFPRGSNASFVALIPKKSHPQSLNDYRPISLIGCMYKVIAKLLSNRLRSVMDELIDERQSAFIKGRHILHG
ILILNEVVEEAMRSKKPAMIFKVDFEKAYDSVSWSFLDYMLLRLGFCQKWRRWISACLHSATISVLINGSPSKEFNPSRG
LRQGDPLAPLLFNIIGEGLTGMMREAVHKNLYRSYLVGKKREPVNILQYADDTVFVGEVDWQNVHAIKALLRGFELASGL
KINFAKSQFGIIGGGVNWGLAAANILNCSQMNYPFHYLGIPIGANPSSLMVWEPLITKFKAKLSKWAQKDISMGGKVTLI
NSVLNALPIYLLSFFRIPQRIVQKLISLQRKFLWGGDNTHNKIPWVKWADICLPKNEGGLGIKDISKFNVALMGRWIWAF
ASGQQQLWVRVLISKYGGWPEFQHDTDKRGFSHWWRDLRKIFHQSDHNIFKHQLTWKVGCGETIKFWTDKWLGEDYTLEQ
KYNQLFLISRQQNSLISNMGEFNHDSWEWNLRWRRNLFDHESDL
>L1-20_XT_pol#LINE/L1 1497-5237  [Xenopus (silurana) tropicalis]
MSRVNIISWNIRGLNDKVKRALLFTALKQWSPAVVCLQETHLTGQKILSLKRGWVAQAYHATFSSHARGVSLLIKKNTQF
ILHQIYNDHYGRYIVLHCTLMTFEFILITVYIPPPFSIDVLNLILQKVALLPLVPQCWLGDFNNICIPAQDKLGSSDNKP
TKLKIWADSVGLLDIWRIRNPLSRTYSCHSTTYQSLSRIDMVLTSPDMAPKIIDITYGTRSISDHSPLIIQIQPCIHLGT
KRWRLSPLWLSQDEIAEKVQDSAEQYWEENSGSASPAILWDAFKAVARGTLIQSIKTVRIRTKLEVXQAIEEAEAAEANH
IANPSTATXEQLTQAQIKLKCKLTEITQKKLLYASQRGFEQGEKTGKLLAYLSKISTPQTIIHRMLSEKGELITDPKEIA
DRFGEFYSNLYKSKVQYNSNALQKYLDTITFPKLSIAATKYLDRPITPGEIQEAISSMASSKAPGPDGLPIEWYRALGNK
IAGTLCETLTQSAEQNNLPPSFANALIVLIHKEGKPPEQCGSYRPISLINVDAKILAKVLTTRLKTVITQIIHPDQTGFM
PHRSTDVNLRRLYHNLQVPHDNSGSRIIVSLDSEKAFDSVEWPYLWGILEQFGLGENFIKWIKLLYXXPTARVQANNFIS
XTFSLTRGTRQGCPLSPLLFALAIEPLAIQIRHSKQVTGLKYGLIEERVSLYADDVLLYLADPGPSLTGILXXFSXFTVF
SGLRINWTKSVIFPLEPTLTPKQAADSRLQWVNTFKYLGINIHLDPEQYIPMNITPINQQLATSLTHWASLPLTLWGRIN
VIKMIFLPKYLYIFHNAPTIIPKQICDAIQAQMRPFLWRNKVPRVSFATLTAPYDKGGLSLPNLFFYYLAAQLSYINWWF
TQDLENQNVVLQANTLGSLEALKNYLLRKPKDHPPLPPCMKAPVAAWQAVLKLXKITFPILXXSLPLWKNSNLQHFYHSE
AIWFWAPKKVKYLGDIVPNSKFIDMVELRDKINMPQLPMYRYLQLRHTVRAQFGATDLTLKEPPLLSLLRREDPSKMISH
IYTQIISSGPAPFQSAYTKWQDDIPSLRPDQWEEITENLYKFLICTRDRLIQHKFTLRTYYTPNRLFRMGQIPAPICKRC
GGVDGSYWHMVWTCPIISRYWVKITRYMIXTLALPPLCQPEICLLGLMDDLIPTNYARIMXRSLLYYAKKMLIMNWMAPL
PPKKTGWIDLVNKTLPLIKLTYEARGQPNKFDRVWGGWLETHLIRLP
>L1-18_STu_gag#LINE/L1 33-1628 [Solanum tuberosum]
MTVDGRTLELRSSELPMETHRTTQVAKRNNLDSQSQQQMDFPPLNNLKITPTPNSQSSKTGPPLNFAAALGGNGARRKIR
LPHRPYDLKEGKPVVSFSKEENDMLAETCKLTLIGKFTKIRPSIEKIRDEFKTSILLKGSVKIGAYNTHHIFLDFDLEED
HRNVYGRNFLTLCNTQMKLLKWKSDFRPEAETTLAPVWINLPDLRWHFFEWDALCRIVAPIGVPIIADKATLSKTRPTTA
KIKVEIDITKAQISEIQIVVKNEDGELESTNQRVEYENVPEYCFNCKAQGHSDENCRILHPELRGSDNKNSTNETQMQQQ
KKVEDLNEASKNSNGMQKGRNESSTIKWDKISGSEVKSKSSEEDEGWTTVSKGKGKIKIQGNNGQGNQKTIETENQFTFT
AKEVGNKAEDRPSETSNLFGITFTAQEKPNIENISSKRGKRKVTATPRWIQENANQAAVRKARIQKKVVETFSPPMKEEQ
EVRKEIRKKGRKRMHNEGTTTKSSQFTTTRRKRITTWLKRHSTLKNRLIWKL
>L1-1_DR_gag#LINE/L1 172-1056 [Danio]
MAGKLRKYKYTGKTAANQEDANTPSMMSEPAEHTDILEIKAELISSIKTEITSLFQKELKTALSNEFEMVKAELQAVKSE
IASNASAVRSDLEAIKTTVSDMERGLSSCSDDVTELQNTVRKLEKNVVTLQEKCLDMEGRMRRSNIRILNVAEDPGACTP
ASVSKLLKDTLKMDKDILIDRSHRTLQAKRADGKPRAIVAKLHYYQDCVEILRRVRETGPLHHNGATIFIFPDYPPSVAR
ARSAFNEVRKLLRGKDGVRYGILHPARLRITHNGTEKQFQDAAEALTYVKNNIL
>L1-1_CPa_gag#LINE/L1 763-2178  [Carica papaya]
MKLTVIIRLLGKPIGYKALWAKLHSLWKPTDRLHLIDLDNDYYMVKFHSTEDYLHVLTDGPWVIYGHYLTVQPWSPSFST
ANPDVTNVVAWVRFPGLPIHYYHKSVLRAISRVIGKVFRIDYNTESTERGKFARLAVGIDLTKPLISKFMLDGRLQRVEY
EGLPTICFDCGVYGHLKDQCKKNAETEIESVKSGSTGPSEQDNVAVLDENYGPWMQVQRKGRKVGSKGPILPSKGSDIPR
ENNKNGSRFSMIADMEGALEGPNWLVVKTPKQVGVSNERQPPRNKGKVPVVEDSDQKTMDALPEIMGSTMLANTKPTIGR
VMPMTNMAGESSGTKGRISPRGAGMTYNEKFVISQGTTTLEPSKNTVVIIKDRVDQDHELNRSSPHSSMPPTISLRDRFR
PAVKPPDRLGISKGIKINKTFKKQVKAKKGDEAPTSTTSTTINPLMSKIQELVNKDVSLVSSAVDALQKEQA
>L1-1_DR_pol#LINE/L1 1665-5492 [Danio]
MVKPHNVNASGICQVNLISWNVKSLNHPVKRGKVLSHLKQLNTDIAFLQETHLKTFDHFRLRGGWVGQLFHSTFHSKSRG
TAILISKTVSFEASKIEADPAGRYIMVVGRLNNTPVVMVNVYAPNWDDSAFFTGLFSRIPNIDTHHLILGGDINCVLSPS
LDRSSLKPMIPSRTTQVINQLLKTYGMIDVWRFQNPGCRGYSFYSPVHKTYSRIDYFFLDSELLPLVSECKYNAIVISDH
APLLITLDMPITSNNYRPWRFNTLLLSDVEFVKFISSEIREYLVHNQTPGISSSLIWESLKAYLRGQIISYSARLKKKQH
ERLKKIENDIFKLDEILAHSSTPDMFRQRLALQSEFNLLCTKQTENLLIKSRHKMYEHGEKIGKILAHQLRQQNAAHSIM
SVNDNTGTKLTNPLEINHRFREYYSQLYTSESCKDESLFDSFFKKISLPTIDQEFALDMENPFSKDEFIRAVSSMQNGKS
PGPDGFPSEFFKKFSGELAPILLSLYEESSVTGSLPETMNQAIISLIYKKDKNPSECSSYRPISLLNVDSKIFAKILAHR
LEIVLPTIVSGDQTGFIKNRYSFYNIRRLLNILHHPTPSDVPEVLLSLDAEKAFDRVEWDYLFYTLKKFGFGTKFISWIK
ILYSSPMAAIRTNCHISPFFSLERGTRQGCPLSPLLFALVIEPLSIAIRNDINIKGIQRDNFEHKISLYADDTLLYISEP
LTTLPQIMTLLTAFGKISGYKINMQKSELMPINNAGRKIIFTSLPFKITKDKFKYLGIWITNKYKHLYKVNFPPLIDSIK
KDLERWNPLPLSLGGRINTIKMNILPRCLYLFQCIPVFLTKSFFLLLDKLISSFIWNGKNARIRKNILQRHRDHGGLSLP
NIQQYYWAANIRAMLHWSNPSYDSGPNWLSLENTSNFSTSLHALLCSNFPTPEPLSKYSLNPVVKHSLKIWAQFRRSFAL
KGLSAYAPIARNHMFTPSTIDKTFDIWSMKGLKILKDMFIDGQFASFQQVKVKFQIPNSHFFRYLQLRSFVSSSMSHYPS
LPPPSLLDSIMELSPYSKGLIGKIYSIINSHNLEPLVKLKRKWEVELEIELSEDMWQSVLDNIHSSSICLKHRVIQFKVV
HRLHWSKVKLAKFKPNIDPNCSIEPATLSHMFWACSKLKKFWHLIFKFLSDALNTYVEPEAIISIFGITPQSLCFNKSKI
NVIAFATLLARRLILLKWKEKLPPTFKQWLMELLHHLTLEKIRYTFGGCTDMFFLTWQPVLDHVKKMDPSVILEE
>L1-2_Cis_gag#LINE/L1 693-2096   [Ciona savignyi]
MMRDNVPEIEANLERSLVFQLIGNVEHMSVSSFMELFADGAPLADMSSMVDGVILDNFKDCTFIVTLKEKNDDVDIPQRK
EVIKYFENNDINFTTEKGSTMSIKAELPQGGSEVVSLHPVPADTDRKKLEALITGQKWGKIKNINYGTHRNFNKIKNGWV
NITLTETQXQNIPQLIKIAGRTITVTRPGEEHMALCRYCKVRGHIQNKCPKKGFCGECKTHGHTSRNCRGNVQAPRPRTV
FHSDCNTAELMNTPKRNNIGQXQPWHTVERYVEKRYQNTRNAEIKLTNRFGLLENWPEFYIENEMRQEGPNQYDESIFNL
EDFPNMTAVNSTPKKPLTPLSQRKAKGGKKNKXPNRQEXHKTDQPIENPMDNTQENKQGKATLKQQPTKVHHLSDSSSDT
NEPTEPMTMYNETKQAIPIHRKESNVESIYGTPDNANDIPTIRRSVIERSDIFTSEATSSPKRKRTDS
>L1-1a_Cis_pol#LINE/L1 2562-6080  L1-1b_Cis close enough to ignore. [Ciona savignyi]
MEPEKVLGNNLKIGSLNTNGILNKIKKIIYYMESNKIDILLIQETHVFTKDMMSKFKAQSNIEIFVNAPEHPIRSFRQGT
AILVKKHLLPMYKIHHNIIFENRVQKLNLQYKHNDINIYNLYLKSGQTXKNLIAREQMIYDLKDKLGDVNETIDLLIGDF
NMVSNEIDVKANYDKRKKRDRIALQRLQNGNNFQDAFRVIHKQTIEFTRITKTSATRIDRIYVNRLAKNKTFALNHIRNY
FSDHNNCPVITLKINSNRKWGLSFYKINNSILQHNDIIENLNTMWINWQKQKTKYMNSATWWEYGKKLIANEVRYFSQNI
NHAERKRYLTRVLEIKELEKQYQSQNIVTKITRLKENINKYERKINEGAIIRSKINIIEDEEKPTKEFYRYEEAKGNRDT
IYNIYNQMGELTKNQNQTLNATHAFYQDLWTSAEINIDYIDEYLYFLDPIEYDQLDLKNMTQPINHKEIHECILEINDNS
TPGCDGLTSKIYKQLWEVIKYDMEELYNNIYLKGIMPETMRTAIVKLIYKKGDKKDIKNWRPISLLNTDYKILSKIIAKR
LGIIINKIISPNQKCAIPGRSINNSLENINACIEAAKYFNKNLTILAIDFEKAFDRVNYTYLFKILTKLNIPEYIIKWIK
IIYNKIQSKIEINGAFTDNINITRGIRQGCPCSMILFLIGVEVLTRKIEANKNIKGFKLNHIELKTEQYADDLSILISDN
MSLKETINEIKLFEKASGQKMNASKTQIITNDSLINNVINEHLPNECIKEKIKILGVYFSLNRECITENTEKARRVIKAL
YWKNLKRKLTLKGRIIIINALFMPQLLTIGRHMILPKQFINEINNYMYKFIWFPQKIDRIARKKLIALPIDGGLNAPDII
LKLKAVRATRLYEIRKLEKLQTISQEWTRFNLASTIKLINEQLYTNSALNATEPNKFYKEIRQTIYTLRRKDFPWESNKL
KPIYVELIKDKAKATIIRENNEIIKWSQITLNDKLTKQHFNNVERDRNYKIAHNAYHFGDWYRDKIGTQYQNGKLLIRNC
KFCGNRSDNIKHILTKCQLTEIIINEIEVLTNNACKQKTQITKSIILYNQTKNNATPNLLVTKAINIFKAEIIRKKHQLD
FGNKYIESKDEFTRRILWIINTKIKNILLRESTLRGKQETYELYDLNETYVI
>Isabelle_TM_pol#LINE/L1 4558-8148  via tfasty with MIUSE1_TM_3261-6875, 2 stopcodons. [Triticum monococcum]
MVLLVNWNVLCWNVRGLNSEPKQLALFNAITASGCAVICLQETKKQSFDNNFIKSCCPRRFDKFEFVPARGASGGIATIW
NNSFFSATVLASRDFALVIRFQSTQSAQDWTRVNVYGPCQGVERSEFIQXLLDLNIPHNEDWLLLGDFNFIRALDNRNKP
GGNFGDMITFNDFIRSQNLVELPIKGRAYTWSNMQVDPLLEQIDWFFTSTNWTTSYPKTLVKPLGRPVSDHIPCVVCIET
TIPRSKIFRFESYWVHHTGFMDTVTHSWSKPIRSTNMATVISRNFKHLRYDLKRWSKGISKLSIAIENSNMALFELDELE
NKRRLTTPESNFRRILKNHILRLLNYQREYWRKRCTIRWVKFGDEQPNFFQAMASERYRRNNIASLNTDDGYCVEDHAGK
ESVIFQAFKKRLGTSGRHEMKFDLARIIKKVEDLDQLTVPFTHQEIDDVIKFMHADRAPGPDGFTGHFLKSCWHVIKEDF
YKLCNQIHEGNLNLESINEGFITLVPKINAPTSVNDYRPITLLNCCLKIITKLLTNRLQKIILKIVHRNQYGFLKGRSIQ
ECLAWAFEYIYQCQTSKKPIVLLKLDFAKAFDMIEHEAMLEIMQHMGFNDKWLHWIKAILTSGKSSVLLNGLPGRQFHCK
SGVRQGDPLSPLFFVLAADLLQAVINDAFAQGLIQLPFACATQKEYPVIQYADDTIMVLPACETQAATIKQILSDYATSI
GLKINFQKSTLIPINCDDSLSNNIAQIFGCMTGKMPFTYLGLPLGSTRPSVQDLMPLVCKMERRLTATLNMISYGAKLSL
LNSMITSLVIFALCTLKLPITIIELIDKIRRKCLWTKKTEQGESCNSLAAWSMICKPKDCGGLGILDLRTQSDALLLKYL
HKFYNHWDLPWVELIWNTYYTTKIPHATDACVSFWWRDITKLMPIYRGITKVTIQDGRNTLLWKDLWMDSILASSYPRAF
SFTRNEDISVQALLTAPTLGETFQLPLSEQAHAELMDLQQLLTPITLAHEEDRWTCIWAKGDYTASQYYSYYFRELKAHQ
TYKWLWKSKVTMKIEVFGWLLLSDRLNIRNMLKRRHYNIGDNHTCLLCDSPIEETLEHLFFTCPFSQECWSHLHIRWTTH
GTRLQWIEQAKITWNRPMFMDIFLQAAWSIWKERNNKHFXGISPSKSSWLARLKEDLSLLRYRVGEKLIPFFYLFCR
>CiL1-2_pol#LINE/L1 1935-3838  fragment [Ciona intestinalis]
VREIITLSATTTKPRTTVRRKRIYMTTNVFKNVGMVGKSKINEKKECTEFSKYISRIERNRYIYSVQKLSDIKDSDENYK
NNKEYINLQNNVNIYENKINQGAPIRAKVISFDNEEQPTKNFFEFEKAAHSRCSIYTIQNDQGVITDNKTEIIDIIHAYY
TNLWEKDNKTQAQQNYLDEIETITWDQEETNYLNQPITDEEIKVDITSLNKDSSPGSDRLTPQLYKLMDNDFPTDLAELF
HNIYLKKSMALTMRTAITKLIFKKGKKQELKTWRTISLLNNDYKILGKIINNRIKPILNKFISNSQHCGIQNKDIHRAIY
NIQSAIDSARKLGKPLTMIAIDFEKAFDRVDHPFLLKMLEKLNFPYYITRWIKIIYTNLISKIEINGTFTDDIHIKRGIR
QGCPLSMTLFIIGMEALTRKINRNNRIIGYKLRNIELKCVQYADDLTFLTERTSSLNEIKKELVQYEIASGHKINMNKTQ
IIRNNSETKECLATTNWQNNLQQTIKILGIHFSFEVDTTAQNWVKAVNTIRYILRVNKPRNLTLNGKTLLINTLIVPQLL
HTGKHISLPLKYENILTQLMFQFVWSPSKIENIKRATLQLPKSKGGKAVPIIKLKIISAQLSRFYEIFTEIKRL
>BvL1-2_gag#LINE/L1 807-1865 [Beta vulgaris]
MEFIIPLAYLSKVVSLFCFQVHNPYKRDTQVMFSYIPNSFSSLFRTCLLVLKFSIILLSVMMGSHSNFKDVLLSNPNPNV
ELAASGFPLGDPPTNLSLQNDPPHPPSFLEAVVLDSLPQVQKDIEELSKSCLFGKMLSAPLDLRTIIARTKADWKIINGE
VDYLQMGNGWILLRFANPQDLSLIWSERPWHIQGDLFVLSPWKPFFDPYLEEIKWVDLWVRIPRLPTELLNFDSIANLLA
SNDIGALIKIDQRSLLHNKIRFARACVRVDIQGPLLEFAEVSRVGDLVHGYVIWYEDFSSGCSFCGESEHAIEVCPLLNS
PKKEITHKTAKDTLNRTSLSCMQLLRLLGKLVM
>CiL1_pol#LINE/L1 87-3143 via tfasty with L1_Cis99_3312-7124, 2 frameshifts and 1 stopcodon.  [Ciona intestinalis]
MKKYVNTIWLIFIYITFIMASYNVLSSNVNGLRNTNKRRCIFKFLKDKKGQIIFLQETYGSHKSDTLWEMEEGGQILSSH
GTTQSRGVSVTFAKSCKYVIHGVKTDNNGRFMLIDATLVNTRVTLVNVYGPNEDDPNFYSKLGEELTQFSGNGVIMGGDY
NVILSEELDRLGANKHPNVRARREVIKLMEDNEYVDVFRVKHDRTKKYTRIQTNPPSGSRLDFFLVSKSLLEKVTSCSIS
PSIKSDHSLVTMNINLQSVPRGKGYWKLNVSLLNDSEYVKTIRQGISEYLKYNKKCEMNPHTIWDCLKFVVRGLSIRYAS
KKRANVKERESGISDRINTLHLRLNIDPLNESVLNEIKPLQQELEKLYEKRTHAAAIRSRAKWVEEGEKCTRFFLNLEKR
KEEKRAINKLQSGNQIIYEQNAILTDPKTFYERLNREDAIVDTDLDHYVINTNVPKLTTDESYSIETELSENELFRALCQ
IKNNKAPGLDGLPSEFYRSFWSDICNTFANNVKWSIQHKTLPESSRSGLITLILKPGKGACFADSYRPITLLNVDYKIIS
SVLNNRLKASIPSVISHWQNGFVKQRHIGDSIRLLFNITDYADSRKVPGALFALDLKKAFDSITWEFLHLTLTSFGFGTH
LHSTXSPLYIMPPCVVINNNRISKSFQVRRGVRQGDPLSPTLFLFAIETLGQAIQISKQIKGITINEVSYKVSMYADDTL
IVTDGTTESITATIKVLGLFGDLSGCKLNNNKSIALYIGSKRECTDKPLNGTKLTWPTNTFTYLGVTIPVSNSNSSLFKI
NFDGKLENIQRINLWSQRGLTLLGRVTIIKSLIIPTLLYKLSMVPALVPESFIRKLNRTIFCFLWGSGWERVKRTVLING
FENGGINMIDGRSYITAIRSRTIKHLLDPNYSAPWKTIDLFVVPKHILCALLGSRLSQRNEPYNSLLPLQSLRTNLLSWF
KMIKKNSCPVRQQPLWLNKQVLIRRTAILYGEWAEKSIMTYGDILSETGSLDSLDTSNR
>HAL1-5_Cho_gag#LINE/L1 1606-2548  [Choloepus hoffmanni]
MPRGQKQQKIIKHMKKPDDMDNPSPSTQIKRSEETQHLEQLLKELKMNNETIVRDTKDIKKTLEEHKEDIARLNKKMDDL
MEIKETVDQIKKILDTHSTRLEEVEQRISDLEDDRMENESIKERMGKKIEKIETDLRDMIDNMKRPNIRLIGVPEGEEKG
KGLGRVFKEIVGENFPNLLNNINTQIINAQRTPNRINPNKPTPRHILITLSNTEEKEQVLKAAREKQFTTYKGNSIRLSS
DYSAATMEARRQWHDIFKILSEKNFQPRILYPAKLSFKFEGELKFFTDKQMLREFANKRPALLEILKGALQTEKQ
>CIN4E_ZM_gag#LINE/L1 1-2802 [Zea mays]
DLHKHAATADGTSLLAASASAPKSTRKFYSETSSIGDPVDLLAPARIPVSEKRKWAVGSSPVFPPDCNEVDFNFNASNAT
SHQLAVDGGHDLRSYGRLHFDQHKADAPVLEEGGWSVVRPKFWWRKTVENLKRSSSQQQHDTKGTSTFKTKLQGKCYNCL
SPDHLAFRCSAPTRCWQCLHFGHRARACPGIYYRSRHNSTSPQPEPVQHSMQYTSNVNSRHQQHQRQLNSLLKEQKQAPE
PVLNFSPVQHNKSYLRAAQEGQNMEARYPGDPRARPSRAFCAVSATGSIRRRRDDLISKAVVCSFDGNSHEVDTIVAGDM
LREKFNLCHGQYQLVKHFPEQFFIIFPDARTKQWAIDRRSVSYRGREFHFGDWSEESYARKTSWEFRVKVRVEGIPVHCW
GEEVASRALGRSCTIHYVQERSRRRERTRSFDLWAWCSDPCEIPKEVWLTVSEPDPELPPISTPLPLVGAHHAEPTDLKK
GHVYTLRNHLEVVEDLCFIHGRNTRGGPMNRKPRREFVWSYGVSDSAGEKRERSEEFRGRETMRRDWDHDDDEDFHQHRH
QGTRRQRSLSGWARSSRCRGGVEDCYSSSGRYRPSTPFRRRGMGMGQPGRWIPKIKNKKVSFADPVITAIWPTDVSKGHI
SAENSISLGGMDLGTQAMEEYQCSAHPKVSVPIASNSVNALIHSWSTRGTDSASVPIISGSHLANETIQGDLCIQNVQVE
SNFSNSEPNSQRNVVANEDRQCILPSNEVPPIDHESSTHSTPRPLENQLNSNDRLQIFIESITNTPEPPLILSPPNSNTL
ATSPVLGGSDNLDANVTINAGTPGKRSSSRLAAKQRLNVGGSRDAISKAQEILIAKLSNSAAIQYQGSSASTSNNHVNSF
EQIEGLFSRPLSKDQMEAIMELANQGKGKKGSKLRGCKVAPLKAPIIKAASGI
>L1-2_Cis_pol#LINE/L1 2161-5676  [Ciona savignyi]
MEPNPEMVNNLKIGSLNTNGLLNKIKKIIYYMESNKIDILLIQETHVLTQEMISKFKSQSNIEIFANAPEHRITSFRQGT
AIFVKKHILSMYKIHHDILFENRVQKLNLKYKHNEINLYNIYLKAGQTYINLVNREQMIYELKDKIENENETIDLLVGDF
NMVSNEIDVKANYDKRKNRDRIALKRLQGGLNFHDAFRLINKQKIEFTRITKTSATRLDRIYVNNQAKNKVISFSHIRNY
ISDHNNCPVITLKINSNRKWGLSFYKINNSILKHYDLIENISIMWNNWQHQKTKYMNTSLWWENGKKLITNEVRNYSQSI
TQAERKRYITKVQELNDLENRVQSEKIISKILRLKENINQYERKINEGAIIRSKIKIIEDEEKPTKEFFKYEETKCNRDS
IYSIYNKTGSLTENKEQTLIAIENFYRDLWTSEEINVNDIDEYVSIIEPLTFDQYQLKEMSRPINHKEIYNCLIESNTNS
TPGCDGLTIKIYRLLWDNIKYDMEELYNNIYLKGTMPETMRTAIIKLIYKKGDKKDIRNWRPISLLNTDYKILSKIIANR
LNIVIPKIISRDQKCAIRGRSINDNLYNVKACIDAAKQFNKNLTIIAIDFEKAFDRVNYSYXFKILSKLNIPKYLINWLR
IIYNNIQSKIELNGAFTKNIRITRGIRQGCPCSMLLFLIGVEILNRKININKNITGFKLNKIELKLEQYADDLSIIISNA
QSLKEVIRELKTFEKASGQIMNTSKTQIITNDISIQNILNEDFPSDCXKEKIKILGVYFSLSIDCIQDNIAKSRRVINTL
YWKNLKRKLTLKGRIMIINSLFIPQLITIGRHMLXPKHFINEINNYIYKFIWYPFKIDRIARKKLIAHPKDGGLFAPNVN
LKLKAVRATRLYDLXKLEKIETIAQEWTRYNLGSTIKVINNKLYTNSAINATEPNAFFTDIRKTIYQLRRTDFQWESNKL
KPIYLELLKNVAQTTVICENSEIIKWPQITLSEKRTKSHFTNLERDRNYKIAHNAYHFGDWYRDKIGMQYRNGKVLIRNC
KFCGNETDNIRHILTECQLTEIMINDIEEITNEACKQNTQITKSVILYNQTINNATPNLFVTKVINIFKSEIIKKKHQLD
FANKYIGSNHDFTRKMLWIINTKIKNILRRECTLKGKQDTYELYDLKHNYVF
>L1-5_Mad_pol#LINE/L1 1876-6032 via tfasty with SHALINE10_MT_pol, 1 frameshift. [Malus x domestica]
MRLLTWNCQGIGGDLTVDNLLEQNRLHTPDIVVLLETKNKSSRYGYLKKRLDLEYMHAVEPRSIGGGLCVFWRDASQVTL
VKSEDFVIEVKIWDEHKKCHWYLFAIYASTDEKKRRDQWGYLSRRLGNNRGKTLLIGDFNDILCNDEKEGGNYRPTSSMR
DFREFVAQNELMDLGFVGYPFTWRNNQEAKPIQQRLDRGLATMGWQDLYPENTIRHVVLEGSDHALLFLSTEKVKAWRGR
KFSYDARWSKTEECRQLVVEEWRDKHGGSHAFRFCEKLKALRHRLKEWYRGRGRNSKKVIEQLKEEIRAAYMSTDFASEV
VKMKERELRAAHRNEEAYWRVKSRAQWLKEGDKNSKFFHAQTLKRRRFNQIKGLEDVNGVWQEDEAAISSIATSYFAELF
KSSSPGQIDEIGECLAPRVSAEDNLALTAAVTEEEIKTAVFQIPPIRAPGPDGYSGCFYQDHWDTVGKDVIKIVKAFWHS
GTILRKLNHTNLVLIPKVKCPKNMTQYRPIALCNVIYKVIAKVLTNRLKMVMPKVICDNQSAFVAGKQIQDNILVVHELL
HSLLHQKKGDQTGMAIKLDMAKAYDRVEWVFLLSMMAKLGFAPLFCNWIKECISTASFSILVNGNPTGLVLPERGLRQGD
PLSPYLFLLCTEVSSMLIRRGMERGALHGFSVSANGTPISHLFFADDSVLFGHASVEEARGIVEVLRTYARGSGQAVNLS
KSSIFFGSKTSNRVRRKIGRTMGIQCKTGFGRYLGLQSDFGHSKRVVFEEVRDRLESRLAGWAEQFLSQAGKEVLVKAVA
MAMPNYAMSCFKLPIGVCRDLEKAIRNFWWRGSEQRKGVHWISWERLMKQKRVGGLGFRDIQCFNLAFLAKIGWRLIQNP
GSLLATVLKEKYYPGKSFTEAGKGRNTSWGWKGIFDARKVLLQGLRWRVGDGACINIREDPWFPRPSTFKVKPLVSLQAT
MVSELIDSGSSSWKSDLILASFHRDDVGPILSIPLSKTGCRDRMVWHHNANGVYSVRSGYGVAMNLMENGALGKKGRGSA
SDKPKNCYAWNLIWKLKVPNKIKIFIWRCCNNALAVRRNLKRRHMRVDNVCGVCGAMDESETHLFFRCHLSHLFWFSSPL
QLNSFELAGADFLSSWELFWARVKGRDNAEEIMQEFAFGLWRLWKNRNEVVFNGVHRQPLELLEAWRRNISEFRDATLCE
PAGKQPGCRPMIAPLDRGACRWEKPAFGVLKVNTDASWCKTTLRTGVGWVCRDFAGLLHGAGGSGAELCHSAAAGEAAAI
RTALLACIDYGYDNVVIESDAKVIIQMIRHEMDHDFSLECILGDIEVLARRLRSVSFSYVPREGNVAAHSVAKFVFKEGR
EFGWDCIGPEFLFNILAQDVNLSIRI
>L1-5_CPa_pol#LINE/L1 3-3012 via tfasty with L1-2_CPa_pol, 2 frameshifts. Fragment.  [Carica papaya]
QFPGITQTLLQRTISDHYPICLAFDGIQWGPVPFRLDNRWVHEAKFRALVEEKWKGYEVSGTASFRIARKLKMLKNDIKE
WTKEELRKEEEYMGSLLKELGDLDDKEGSGGLDVKELSRRDEIKVLFAKQARIEEQTWRQKSREKWLKEGDRNNKYFHAL
ASHRRRSNYIEELWVKGVKYSGNDKMREAATSYFKELYDEEFRIRPRLDGLTFKSISVDSRKNIEAVFTEEEVLAALKSC
NGDKAPGPDGFNMNFIQVFWDVIKDDIMEVFNEFHQNGKFVRSLNATFLVMIAKKKGAKHVNDFRPISLVGCIYKIIAKV
FAARLASVLGEVINECQHAFVEGRQIQDAILVANEVVDELVMNNIDGLICKLDMEKAYDHVCWDFVDYMLGRLGFGHKWR
IWMKACLCTTSFAILINGGPSKFFSGSRGLRQGDPLSPLLFIVVMEALNGLMYRARDLGLIRGVTVGRGDNKMEISHLFF
ADDTLLFCQPEKRGLLYLKSLLLCFQGVSGLNINLQKSELVRVGNNGEGDCFAKILDCKPAKLPLKYLGVPLGAKFKDKL
PWDPVVKMFESRLAGWKRQFLSKGGRLTLITSTLANLPIYYLSILTIPCSIAKRLENIQSRFLWGDGEEKRKYHLVNWFE
IKKPKTEGGLGIRSLVEMNMALKGKWLWRYMKDDGKLWKKVIDARWSGAALEGVGGLDRRGHGLGLWKNIKKGWPVFKEC
IKWQLGRGNIIRFWQDKWLDGDCLKDRFPSLYAIAQDKYMRVEGAYSWANGSCSWSANVKRNLNDWEVGDYLELLGLIAQ
CQINDKSDHAIWRLNKKGEFSVSSYYKWIIDKDSSRGYTFPHNLIWKANLPPRIAFFGWEACRECILTLDRLQKRGLSLV
NRCFMCREAEESCCHLLLSCPVVYELWCMIYNLLGIVWVSSGSVMAEVWAWGGIHSTKNIVKIIPLTIFWVIWKERNYRA
FEGVEVDRYKLRDRWFKYFGSCILGHDIIRDEDFGDVIDTLTSL
>L1-6_DR_gag#LINE/L1  133-1050 [Danio]
MATSKKTMSPQKQATGNKRLKTLDDDVASIVSHAIEAQQEALREMVFGMLTEAIKSALAPFNDYINENGTVLRAIKEEIG
SLGKNMASITSKVDDLQGNLRKTKKDTNHCLSQLDQIQRKCTDLEDRSRRNNIRLVNLPAGMEGDDPIGFLQKTLPKWIP
DLSGRSNPIEIDRAHRVYSNSNSNRSRAMIFRLLRYPDRQAILQGARKAKPTLPGGARLEFYADYSAATAQKRKAFSAVR
SKLQQKGAETFLIYPATLKVSFKGQKYSFETPDEAEKYIEGLERTTSAPARRSLYPQLQEAMEETD
>L1-8_STu_pol#LINE/L1 2095-5725 via tfasty with L1-3_STu_pol, 1 frameshift. [Solanum tuberosum]
MKVNILSWNVRGINKISARNLVKSSLLKWRADVYCLQETKINKDVEGIAKQLWSSRWMKCGYSEADGSSGGILIMWDSRV
WTGSCVEEGKYSITYKFEAVHDGFCWFLTGVYAPHTRAEKLECWEEIAAVRELCGGPWVTCGDFNTVRTMAERRGCRRIT
NVMADFSSWIEDMELHDPHLNGGTFTWYRGAGHDSAARLDRFLYSIEWEVQFRNIRQQIMPRVISDHNPVMLQCGDWEQR
KTYFKFENWWFNVEGFKDLVQNWWNGFIVDGCPDFKFSMKLKMLKQKLKDWSSVTFGELNNKKNSLLSELAEMDLIQNDR
VLTEDEMMIRATVLVELEELAKNEESRWRQKSRVLWLKQGDNNTKFFQRVATAHRRCNTIDRLIINGEENKDPKEIKDHI
TEFYKQLYTESESWRPSFVMTNCPRISQEEQEWMQRPFSEEEVVHILKLCDGDKAPGPDGFTMLFFKECWGIIKSDAMQT
IHNFHQNEVFERSLNATFVVLIPKKLGAAELKDFRPISLIGGMYKIIAKLITERMKTVMGRLIDEHQMAFLKDRQIMDAS
LLANELVDSREKQKIPGILCKLDIEKAYDHVNWNYLWKVLSEMGFGRKWVNWIKFCVSTVKFSIIINGSPEGFFQSQRGL
RQGDPMSPFLFLLAMEGLNYMVRKANEMGWIRGFGAHTNRANNMEVTHLLYADDSLVFCGAEVSQIRHLRAILTIFEGIS
GLHVNWQKSCLFPVNQVNDMQGLADNLGCQVASLPTKYLGMPLGAKNKKLEVWSEVLERSERKLTRWKSQYISLGGRLTL
IKSVLDALPTYMLSLFPLPKSIGKKLNKLRRVFLWQGNKEKQGYNLVKWEEVTMSKAQGGLGIKKLSTQNTSLLQKWLWR
FCCEDMALWRRFIAEKYDLQSNWITEEVNGTFGCSVWKTIRRMWPDFSAKVTFRVGNGLKTSFWNETWLGDVNLRILFPD
LYIISLQQNDTIAQMWTPQGWDLMFRRALNDWEVGRVADLLHALNLFPGTVTEPDKPVWRLHSRGVFTVKSCYWERNTNH
LLTTVWPWKLIWKIKVPLKVACFTWLVIRRACLTHEVLQRRGIQICSKCYMCGQKAEVNGHLFLHCKIATDLWNMFVCIL
RVNWTMPRTTFEVLTHWQGIGKRGSKEDWWKNIPACIWWTLWKERNGRCFEGKVSSLEEIKMKCLSLLYFWCKQNLVGEV
DSLVEFKSQL
>L1-6_GM_pol#LINE/L1 2162-5834 via tfasty with L1-2_GM_pol, 4 frameshifts. [Glycine max]
MNILTYNVRGLGRGVKWSAIRVRKHKVDLLCLQETKKQQIDPTMCQSLWGDSDVSWEIQPATNTAGGLLCLWSDKSFKVD
RRVCGSGFILLEGKWNNEDQKLCIINIYAPCDTQNKRVLWESIKQLKNLNPNGLWCLVGDFNSVRNASERVGISQRGMDD
TPSNEFNEWLEDLDVVEPPCIGRKYTWFRPNGTARSKLDRAFVSSEWLTKWPASSQFVLERNFSDHCPVLFKSKNVDWGA
KPFRVLDCWLKDKSFGKIVKECWTQTQLSGWGGFALKEKIKRLKERLKSWNKEQFGDTFKRVQQLEAELNKLESEAADRQ
MTPQEITIRKRLQQDLWTAAQAHESLMRQKARSKWIKEGDCNSRYFHLLINSHRRFNVLNGVVINGSWIDEPNRVKEEVR
SFFQQRFQESMHSRPNLNGISFHSIGQRENQRLVDSFSEEEIRTAVWDCDSEKSPGPDGFNFKFIKQFWQILKPDVLRFI
DEFHANGVIPRGANASFIALIPKVTDPQCLNDFRPISLIGCVYKIVAKLLANRLKRAMSSIIDERQSAFIAGRHLLHSVV
IANEVVEEARREQKSCMIFKVDFERAYDSVSWNFLSYMLRRLGFCKKWILWIEGCLKSATVSVLVNGSPTTEFVPQKGLR
QGDPLAPLLFNIVAEGLTGLMREAVNQEMFTEFFVGEKNVPVTFYNMLMTPYFLERLTCKMCKTIKSILRAFELASGLKI
NYAKSCFGAMGQSQQWIMQAAGYLNCRILSMPFTYLGIPIGANPRRSELWDPIIRKSEKKLARWKQRHLSFGGRVILIKS
ILTSIPIFFLSFFRIPNKVADKLIQIQRRFLWGGGTDQKKIAWVKWDTICLPKQKGGLEIKDISLFNKALLGKWWWNLMQ
QNSEIWAKILDSKYGGWRALAEGKRAPKASIWWKDLQSVIHEQKMNTVLQTETEWKLGCGDKFRFWEDRWVRGGEALMRK
YPRLYQVSCQQQRLIQQAGRQTETVWEWNLEWRRPLFDNEVDAAVRFMDDISQIQIQNQITDCWIWKPETTGQYSTKSAY
YLLQEATVGDTLDEALEDLWKLKIPAKAQIFAWRLIKDRLPTKANLRRRQIQMNDTICPFCRSKEEEASHLFFDCPKTQP
LWWESLSWIQTMGAFSINPRQHFMQQTIGTNGGKQYSRWKCWWVALTWSIWQHRNRNVFLNEPFNGSKLLEDAIFLIWSW
LRGFEKDFVDSYTYWSSNLPVAFCI
>L1-5_Cis_gag#LINE/L1 698-2170  [Ciona savignyi]
MAAXKEDIPELEINMERSXIIKLTGNVELISVSSFMEIFAENGPLCYLGPDVDGVITESFKDSEFLVTLKXMDGXCPDLX
EIXKIXNNKKLEFTGPAGSIMSVEAKYPEPPLEIVTLYPVPCLVTEXRLRQLLTKYKWGKXHSFFFGTHRHFPDIKNGWL
TIKMYNININNIPKVMKVGGRWVTVTRPGESHLPLCRFCKERGHLQQKCPKKGYCNNCSTXGHLTXRCRSAPMRPTQPNX
NQPQHGMTQYQTPATTLNQWITPKLAKKKTYQPTNQQPISIQNMFSTLQQFDDTDHSMDEEDTTILKSGPNLQLPQRTPR
KNKKQFNSANSTPKLTIDDSPTNLTTLFAQTESGQTPTPEYMINQSDQRKYDQSIPSITINQEXTKEKTSPQQTNFTKEP
QQTSQPQQDSPSTXSSQTNGISPTPTDPSTENSPDSAFEVIKKAHKTLGLDPKTHSSAKPPYIRRTIKEITRELFHPESP
SKKRRTLEHS
>L1-2_PD_pol#LINE/L1 155-4292 via tfasty with L1-11_Mad_pol, 2 frameshifts. [Phoenix dactylifera]
MRILAWNCRGRPSTSFMSSFKRLVQVHCPEICFLCETRLSGEGLVRLRQHLGRDWETYAVDSQGLSGGILVLWRRGVATV
DVFHNCPQQVVMIVSEPDAAPWVLCGVYASTDYRVRRVLWQEITNLAAQGVPTVVVGDFNCILSTSDKRGGAAFTDRVDR
REFRDFVSRNGLVDLGFSGPQFTWCNNQFGSARVWERLDRAFASPDWILRFPTCRVSHLPRIASDHCPLLLSTSSGPSHH
SPFRFEKVWLSYPQSWDIVRDAWRVPVRGDAMQRVSRKLELTKRRLRRWNREVVGNIFRRLEGVETAIAELQRKEDLGGV
LPVDDMVDLRGLLATHHSLLRQHEIFWRQKSRVQWVSEGDRNTRFFHRTTVIRRQRSMIHSLRDGSGHRVEGEPAVRQVL
LDFFRARWTEDEDSGDGDHPPRVDVGIDDDENATLVRPVSAQEVQEAVWALAADKAPGPDGFPPFFFRQYWGIIRGAVVE
AIQCFFTQAAMPEDWKATFITLIPKRQEAAEPCHFRPISLCTTLYKVVARIMVGRMKPLLPGIISQEQGAFVAGRNISHN
VMLAQEMMWDLQRAPKRRSLMAVKLDMERAYDRIRWSFLQQALEAYGFHRRWIGWVMGCVRGPKFSILVNGTPSSFFEST
MGLRQGCPLSPYLFIICADILSRALQRVCASRELEAYVPAPGAGPISHLLFADDCLLLARARVSDARVLRRVVAGYCAAS
GQRVNFLKSAIHFSPSTESRVRQEIRGILQIPEQEGTLTYLGVPITGRRLRVAECSGLVQRVQSRLEGWRASSLSMMGRL
TLVRSVLGSMPVYLMANTVVPKTTLLRIERLLRSFLWGSHSGGHGVHLVAWEQVCLPTSEGGLGVQSLLERREAFIARHA
VRFMLEPHGLWSQVMAARYGRGGSEVARSGRRVSFMWREIGRYLPTASANTRWLIGDGRSIDVTGDPWVDTLPLRCWPTM
VDTEAVEGLRVCDLLAPGGAEWDEARLRQLFGVHLAERIRSLPVPGCAGPDVRVWGTSCRASVRLGDLSRVIQREHEPGP
DCTWIWRSGLHPRAALFLWKVMWDRLPTRAVLSRRGWGIPAECGTCGAEESVDHVLFQCTWARSTWQWAGIPQEAWSERL
QFLQVIRQWLASSRTCQEAIRATCTAHQIWLARNARTFGERRVSPRFVAEFARAQATEIRPTPSSDRPLTARDTWGSLSA
PAAPQMVFFTWEPPPPSFLKVNFDGSVLDGGTRGGAGFVIRGPHSRVVAAGGCQLFDTSVPGAELRAAWAGLRLCAAVLQ
ASSIILEGDSATVIGWIQGGPRGESTDHPLIRDIGMMMRDGGAFQAKHVFREANGAADWVAAYAAHHSGYTLWSGEGELP
LALRELLYFDFIGCIRTRTV
>L1-2_FR_pol#LINE/L1 452-4213 [Takifugu rubripes]
MGDLNILVWNCGGLNAPHKRTSTLTLLKRKNIDIALLQETHLLKADMGRFADRFFHTIAFSSADTKTKGVAIVVRRSLPV
KIATSWADESGRVAIAQIEVHSRKIALISLYAPNDFRKDFYNLITTKMLELTDYSFIVGADFNAVWDPVSDRSSATSSGG
QSMATNALKSWANNLGLMDIWRLVNPTIRDXTFFSGRHKSFSRIDYLFASPQLFQLVNTATLLPIALSDHKGVFCSVTLN
YVSKRAVRWRFNTSLLKNEEYTKQFVSGLKEFLNFNVGSVEDPRILWDAIKGFIRSNTILFSSNARKSRSLHLQNLELEF
TRLDSILQSNFTEPVALQRTIIKKEINNILKQQSEFQIHRTRQKYYFHGARSSHLLAMRIRANDHFADIPAIKLADGNTS
TDPKQINCTFRTFYSELYKTEVSLDKIQCDRFLNQLRLPQLPGTDSSHLERPILLEELEKAAKTMQKGKSPGIDGIPPEF
YVTFWEHLGPFLLDMIVFSIERGGFSRDVNTALISLLLKKDKDPTDCSSYRPLSLLNSDLKIFAKLLARRLERYMPLLVN
PDQVGFIKSRLATDNVRRLLHIIEAATDNKTPMSVLSLDAMKAFDRLEWPFLWSVLETMGFGKNFIGMIKTLYSNPSAQV
LTGQMYSSPFSVSRSSRQGCPLSPALFVLSLEPLAEAIRQSNLILPISVCNTQHQLSLYADDVLVFLENPAQSAPHLLAI
CEEFGNLSGFKINWSKSALLHLNEAAKSSVLPINIPIVPHFTYLGIEIFPSLNQITKYNYSVVLNKTLRDLDRWVDLPMS
IRARVSVIKMNILPRINFVSSMIPLPPPSDHWSKLQSATTKFIWNKKRPRLKMSVLQRRREDGGLAVPDFKLYFWSFVLR
PLLSWFNPDCSVSWRTLESNAVQPWTLQDVLFSNISKKQCQLRFGPLISYLVSTWRQVETHCRLACKWHPFSPIFNNNGI
LIGGRPIAAPQWQQRGVCYLKDICNDSGLLSFNDIRVAFDLPNSSFFFYLQLRSALKAQGVPLQCSLPTHPLRDLFTKHK
GAKGVVSKLYRFLQRDPASLPIERIWKKDCPDLAQQFDWNVVWSSITEASRNPDHQHIHFNFLHRTYLTPVKLHHMKITN
DPYCTLCSLKALGTYIHMFWDCPPVQSFWKNVAAKLSDLTHVVVPVTIPVLILDDLSVLKISKPKKRLIFAGLTAAKKMI
ATRWKPPHSLTTRSWVLSLLDVIYMELSTARINCANETTINIWRTAAESLSSMT
>L1-3_NV_gag#LINE/L1 2-814 [Nematostella vectensis]
MQVQIVSGQKNDGSVRVRKARKQMEDSHYEYDCNHALLVDKLELMNAKPDSTMLAIKQLQGMKKQIYTLKQENQELKKSL
EFSQEEIITIKEEFKMADTKLEEMSSQVSLLEEKLAAERSRGVKLESFSRRNNLRFFGIPEGTNESWNGTEEAVRDFIHK
NLKAGPKQAGDVSFERVHRTGTEDKSSPRPIIAKFSFFKDKEEVRSLAKNLAGTSFGIAEDYPKEIADVRKKPVPVLKDA
RANNHKAYIKFDKLFINDALYTGPEGYRAY
>L1-3_STu_gag#LINE/L1 156-2148 via tfasty with L1-4_STu_gag, 1 frameshift. [Solanum tuberosum]
MEENRIYFNAGFKSFDITRWNSSKSEWYEWVERSRKKMTRSVMSKKAMEWICFCLREASKEHKKETRRWKLADREAELFC
TKKQNEYGKFMSVITLNSGGRSGLIIPELALNAGWVDIALKIERFIKCQQREKEHSFSRVTEEEYSYAEAVQQSKWGSSN
LRRAEMNTKKGSILITKPVNIKEEDLLKRCLIGYCTAGKKEKPTLADIRSWSSTNWKKVFGVNIYELNSEMFLFEFPNRY
MAELIIQGQWRWKSSIFHLDWWSPTTGCTPSPSTVRETWIRVVGIPLHLWSRKVFQEIGDLCGGWIETEEETELKNHLKW
ARMGKILVKNNGRNLPKEVSVACDGITYFFPIWAESKPRFEIRSESGGIVAGEDEVFCPGNRFIQRSDGVNICDIVPKSH
PFRDFSTSKHVGCTSTARKTMGNGARERHVSFLNERAELGPSGKPKKNNNSKWPNGPDFAAHVIFNDLQGTKIGYTETHK
LAGDITALHVSNSGEGKQNMNTKVVTELLEEEIRGDLMITGEEEPNSIDRGDDREITKSGETGLAIQSSNTEIVNWEVEE
PVPIMVQQQQRAQDVDKANSTWVQQNLIKLGKIFGIDFQGHEEEATELLLQIDSCRQVRRMEQDTEVKKLKIKGAQELKS
LVAFDVKFKSSGSRNKGRNTIFNT
>L1-3_NV_pol#LINE/L1 1167-3682 via tfasty with L1SU_SP_pol, 1 frameshift and 1 stopcodon. (fragment; C-terminal 350 AA missing) [Nematostella vectensis]
MPFNITACSLNARGMNTTKKRRQIFRWLHNQKYRLICFQESYSSKSLEKIWAAEWGGPIFYSHGSNHSKSLMVLINPKLD
SQISNSVTDKNGRYLILEITIEDSPFVLVNTYAPNDIKQQQLFFDTVKEKLRAFSGKQILWAGDHNCALTPLDKSGGTDV
SKKHIVIDEIKRACASLDLVDIWRNQHQNIRQYTWHNRNLKIQCRLDYWLVSNSTASIMENSNILATSFSDHSAAIIELK
SKDFVKRGRGFWKSNNLLLKDLKFIEELKDTITSQKQCYRTMKDSRLKWDMLKMDIRTFSVKYSKGKARERKDKERELQA
EFNIVQQKLNEDMSDKRICVNCYETKHKLDLLARQKTKGTIIRSRAKWHEMGEKNTRYFLNLERRQHDSKYITKLNDDKS
KEITDQKEIMNEIQDFYEKLYTSSQENEGVSTCSEYFFSTPPSKILNDSEQKLCEGRHLEDEFVQCFNAAFERGEMSISQ
KRGVITLIPKKTTNRFYLKNWRPITLLNVDYKIASKTIATRISKLLPDIIHPNQTGYVRNRYIGQNVRMIFDLMDVTQTE
DIPGIALFLDFQKAFDSLEWNFIRKTLKTFNFGPDIIKWFNTFYNDISSCALNNGYATPFFSLHRGLRQGCPMSGILFIL
AAEISGNAIGKDEQIRGININNSEFKxTQYADDTTIFVADMKSANHLFALSKKFNKCSGLKVNLSKSEGLWLGRNRHCQE
TPFGIRWPKKSVYALGIHFTYDKITLKKEYLSVKLESMKKLLDVWKMRNLTLEGKINIVKTLALSKLTYVASLISIDNDF
TTEVNKIIWSFIWDRKLKISNREDHHTFSVKLMSDTESI
>LOA_Ele2_pol#LINE/LOA 402-4058 [Aedes aegypti]
MNRIKIIQVNLHHAKGASAVLSRRFTKENINVGLIQEPWVNNGRVLGCPSSSCRVLYDETQSKPRTAILVNRDTKFVPIT
EFIRRDIVAIKVEVPTIRGKTEVCIASAYFPGDVEDVPPCSVVHFVNYCKKINAQFIIGCDANAHHTIWSSTDINKRGED
LLNYMSSNNIDICNRGDSPTFVNSIRQEVLDLTICSDLLSEKIVNWHVSDEESLSDHKQIRFDFKAGSEITESYRNPKKT
NWDLYRFHLTNKNSYNGEQFTTVSQLENASDGIIDQMVSSYHASCPIQQRSSNRDVPWWNDKLAGLRKKSRRLFNRAKIT
LDWVEYKKALTEYNRELRHAKRKDWRRVCETINNAPAAARLHKVLSKDHSNGLGCLKKEDGSYTVDSSETLEVMMRTHFP
ESIPYSDEEQVSDEARHVWSINAYQKACEIFTPSRVEWALSSFQPFKSAGKDDIFPALLQQGKETLCPLLTEIFKASVAL
SYIPKAWQKVRVVFIPKAGRKDKTTPKAFRPISLSSVLLKTMEKIIDDFIKSTSLIEMPLCKYQFAYQSGKSTITALQSL
VNKIEKSLEAKEIAVVAFLDIEGAFDNASYSSMSSAMEARGLDKSVIEWVMTMLKGRTISADLGGAQISIRSTKGCPQGG
VLSPLLWSLVVDELLRNLIDQGFEVIGYADDVAILVRGKFDNTISDRLQTALNITLKWCRKEGLNVNPSKTTIVPFTRRK
KVKLIQPSLNGVQIQFSEEVKHLGVTLDKKLNWNSHLSKVISKGTNALWVCNKALGKTWGLRPNMVNWIYSAIVRPKISY
ASLVWWPKTNEVTAQKKLAKLQRLACISMTGAMKSTPSVALDALLNILPLHQFIKLQAAKNALQFIRYNKILDGDLIGHM
KIIKEFNLNSDNKTIEDWMTTKTNYDVPFKVVKPSRYTWDSGGPSLRAGSIVFYTDGSKMGDNTGAGVFGPGISKVIAMG
RSPTVFQAEIQAIIDCTNVCLKRNYRFAKICIFSDSQAALNALKAFTCRSKLVWECILSLKQLASRNEVTLYWVPGHCGI
EGNEIADNLARQGAASSFVGPEPFCGIPECTLRMKLKNWEMSMVESNWNATDTSKQAKRFIKPSLAKARAILNLNKGNLR
VITGLMTGHCPSRYHLKNIGKIQSSECRFCQAEDETAEHLLCNCGALLNQRTLTFGKGLLEPLEIWQGSPNRVIDFIKRV
VPSWDSVTHQPMSITSQL
>CAULIV-1B_Mad_gag#LTR/Caulimovirus 217-2031 [Malus x domestica]
MSRLFRSNSMASTSSRSSLGTIPDIVNEEQKLDFQTDXSVDFGDWNIPKVSSKNIYKKKWSVASFRSEHHVKTVEKAYAL
SKEHETCQLFSPEQIKTHRKDGHNYIHIGLVQIAVKPLTRRGLNTSILLCLRDARFTNFSDSILGMIESSLYNGPIHFDC
FPDLTISLSDPHMLKALTLNIKTSGYQVLEGTQPLALIYRVYYKVTGTNMNFQALTKSPRDHTLLIQTNQENANIKVPRT
IRWSDISLPSDWCLINESKPVAIQNSLVNLDNIEQYFDGTVKINFDRPARRSCESVHSHKSFAPSRNSFSGSIPTDRMGQ
DQELINSLANRKLKAVDTSSSVTQQELINDLINIKLKSVETTSQVTHPVYQPQTQDQGEQTSPTESDFEAGQVNHQLLVL
NKPFKXNXKRLNADIEAXENIPRRNIFRNKYTXEEKLEIYKKWTNFMETHRFEVFFFDYVEKYYESEKKLEVITKENWLK
EDKTIVSSSHPPQETILITTANTQIPATPFKLPKEDAGVKPVIEQNNFTNQSLHTIGKQLDKIETKXDKLSQPKPTIREK
PLVNFPESSSSAVALKTTRFHKSKNXPNVTRIKTRKNSXCFXTSX
>CAULIV-1_Mad_gagpol#LTR/Caulimovirus 295-5844 [Malus x domestica]
MSRLFRSNSMASTSSRSNLGTIPDIVNEEQKFEFQTDSSLDFAEWNIPKISSKNIYKKKWAFASFKTEHHVKTVEQAYAL
SKDHETCQLFTPEQINSHRKDGHNYIHIGLVQIAAKPLTRRGLNTSILLCLRDARFTDFSDSILGMVESSLCNGPIHFDC
FPDLTISLSDPHMLKALTLNIKTSGYKVLEGTQPLALIYRIYYKVTGTNMNFQALTKSPKDHTLLIQTDQENANIKIPRT
IRWSEINLPSDWCLINESRPVAIQNSLVNLDNVEQYFDGTVKINFDRPARKSCDSNRSLKSFTSNRNSFSGSMPNDRQGR
DQELINSLANRKLKSVDTGSSVTQQELINDLLNFKLQSLETNAQVVQPTYHTPSIPPKEEQTSPTASDFDAEPVHHQLLV
LTRQEPFKYDRKKLCRDIEALENVPRRNIFRSKYTTEEKLEIHKAWKDFMQTNRLEIFFFDFVEKHYESENQVKVITKEN
WLKEDKTIVSSSHPPQETILISTANTQVPASPFKLPKEDAGVKPVIEQNNFTNQSLHIIGKQLDKIETKVDNLSIKPLSK
EIPLTSFRESPSLKTSTSIKIEQMLHKLEKDKSVRVINNPHDSETPSSIPDSEDESVDSIHQMEQAFQSLELKRLNVKRT
NPTSLTKNWYPRPTPPDLQFEERNFQSQFTVSSDKLYEWNIDGLSEQELLNKLQHISMVANSYITNHDLSQTQIVDILVS
GFTGMLHSWWEKHLTEDSRNLIRNAVKQDEEGIPIFDEHLGRGVPDAVNTLLYTIIQHFIGIPSNITSRIHDQLSNLRCP
TLSDFRWYKDVFMSRVMLRDDSNQPFWKEKFINGLPNLFAHKIRNTLINEDGIIPYNDLTYGHIISTIQKEGLKMCIDMK
ISRQAQSEKAIAKYELGTFCEQYGLPPIAPSNLKKKSTTFNRSKISKPRTNYSKYRKGKYAKPNPFYENPKQKRWKGKRK
SSGKFHSKDNSHKGKCYKCGKEGHYANKCKVKKTISQLKISEEEKLQLIQALELQNTDSSHSSEDDLGSTSSSSYQSASS
KHSTPNIKLGCPDACCKNISVLTKQEKQEELLLELISNVEDTELKRFYLKKLKNLVSQEEVGTSQSQIQKPQISLSSTLA
KFSKTKKEITVSDLQKEINQIKEEIKLLKSDNHEIRTQLTRANTPPKEELSSSSSSSSHHESESDTHSEHLVLNLLHKIR
IQKWYSKVTIVIEDFRFETIALIDSGADLNCIQEGLIPTRYFHKSKEILSAANESPMEIKYELPKAHVCQNEVCFKTPFV
LIKNLSDPVILGLPFIALLYPFKTHHNRITSKVLGQKVTFEFCLETDLKKLRHLQKDSTSRSLNIISNKTKHLQFLKDDI
HHKRTEEQLKQEIISQKILKFEEQLVKEVCSDIPNAFWHRKQHIVKLPYIKEFNESKIPTKARPIQMSQEVMDFCKAEIQ
DLLNKGIIRKSKSPWSCPAFYVQKSAELERGSPRLVINYKPLNEVLEWIRYPIPNKRDLIKRLSKATIFSKFDMKSGFWQ
IQIHESDKYKTAFVTPFGHYEWNVMPFGLKNAPSEFQNIMNEIFNQYSHFTIVYIDDVLVFSKSIDEHWKHLHLFARIIR
SNGLVVSATKIKLFQLKVRFLGYNIHRSTIQPIDRVIQFADKFPDQITEKTQLQRFLGSLNYVSEFYPHLRQQCKPLFDR
LKENPPAWSTIHTSIVKQIKNHVKTLPCLGIPTPNSFKIVETDASDVGYGGILKQQTSSGSPEQIVRFHSGVWNPAQTNY
STIKKEILSIVLCISKFQDDLLNQKFLVRVDCKSAKHVLQKDVQNIASKQIFARWQAILSIFDFEIEYIKGSHNCIPDFL
TREFLQGKNV
>RBTVL#LTR/Caulimovirus 503-5791  [Oryza sativa]
MDISRSLFRRIASRDDNCSDKQKGKYDDIDELKDVAQVDKQLERYQRDTLRAIRPQQVYCMGFFENKNGLYRISREVELS
VLTKPVELKIVAKEFENSLKYSGYKYIHQGMYIIGIKGMTRKKLGAKVLITLLDKRWDTINKASLGYLEGDMNENMLITY
IAPDLMMPVNEFIDKMSFGFQTKGYEEFKGTNLLISIEFIGRLTNRSASKYKINVNDVIEKMHSKGIKFMSPLIIDSEER
AGEKWPISEFIKNKTLSQPENFISYQDSKGNVSIRFTNYKTRASDDLDAESSDRDIIDNRRHSISELMEKLDHESEIKYY
EDKLRDIADEYNNSMKSEWPKIRDKELYFYRELSRIKKQKKEKSLVIEIPRTQEIKIEQIKSEEPREEIQKLDKVLSEEE
QWEVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDEEGLHNLDNAMEAMEVDLGTGKRKRYGEGSVKNEGER
ERPARAAGRWPPEKEEYSYHYIPGQYRHMGTKRRDFEKPIKFQNQKSDGAILNLAAHDPIDWPNIISIWKGLIVQKYIQN
QHNIGNKVEDMITYLETFLGESAKVLWEQWVEKNPNNYEELKRAGSNPHNFENIVSNIIIAEDPELGYTTLQNERLKEIE
KLTLTSWKGIKEFSQHYLYNATTAKQGYNKGIVERYFNKLPDPLGSMIFEEYKKETEGAEINISQAITFVFKQLRKICTG
IQAQRSMKHSDYNFCNKIIQIPLSYGEDRPRNKRNHRYQSRNSNNIKTKKRYFLRRSDNRAPFLHKRNVRRYNPKKTYDK
TCRCFICNSPDHLSRTCPNKDQKRYSSTYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEIENTNEEYESTDEE
LDLIDELAGLKIELMDQLNCEHDWIRGKGDYNIKCAFCIYYPSQDNRVTCSICLKQACAECIKANKQKWRKEIELESDER
ILSSRVRVLENRINKLEVELENLKINYDIKALPENKDIQNTEFKEQVITLKDSNTAKIIQLKDAITNFGNKYIVKLPFKE
ILGIRIPVKVKLSPKVSYKILALVDTGCTKNIIHDKYFIKCPEIVHTIDDNKAEVSTDMSGIKKIHNQLAHNVEVYINGT
KYIIDEITIRNLSMISDDMIIGLRFLQQSVQTTVIHEQGITFIPYQNNVPYISEVRKRGGARIKPDNLEALNLESEERIN
EYELSENIDNYSFSSYLPKSMELPGKTSWEDRYLLKATKDFEYICREMASQKSEWLTNMSSWRLPQLPRGHGERFNHNFR
ITELQQGLLNLLWQTKNKKEKAHALNGLAYYFKNFVPSDQKITEKRAKIQDIPHHEERLLDYREEKSRDGQDKLPMEVEQ
SMATDKNTKVFSDKILISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNHPNLFLPQYILRTQPKA
PCRSCAYKDSCKKKLKSQNPMSTTYENLQPRLSFKTEQTLSCFGQDILDLVWQKFKERQMKIFLGLQDYFFDLLEGRERN
PAIRVIIYMLPLLRLDDQAISDPSYRFLVLKAEINLQRFRNLPTYNHEEISLQTIIDHGLVNSIYATLDQILQSDLGNAV
KDVCRRLGHGRYRIIFSSIPPKFTPPVRPAIHYIYIMKGQFNFQEDGPSKLSDEEEEIYTTVANHENWRLFSEAAEIEEA
ITTDYEYQLVFQNKITRIFISKFYNQSYEYFKGAGRIIKPDFGNECSKKSYYRSLAQWFQKTEPSEIDTVQSAPMIINED
NE
>ATCopia21#LTR/Copia 146-4495 [Arabidopsis thaliana]
MSSSSETVVVADSTSLLNVNMSNVTKLTSTNFLMWRRQVHALLDGYDLAGYVDGSIEEPHTTVTVHGVTSPNPEYKLWKR
QDKLIYSGLIGAISVAVQPLLSQATTSAQIWRKLVDTYANPSRGHKQQIREQIKQWKKGSRSIDDYVLGLTTRFDQLALL
EEAIPHEDQIAYILGGLSDDYRRVIDQIEGRDISPSITELHEKLINFELKLQAMVPDSSTPVTANAASYNNNNNGRNNRS
SSRGNQNNQWQQNQTQQSRSNNRGSQGKGYQGRCQICGVHGHSARRCSQFQPYGGSGGSQSVPSGYPTNGYSPSPMAPWQ
PRANIATAPPFNPWVLDSGATHHLTSDLANLSMHQPYTGGEEVTIADGSGLPISHTGSALLPTPSRSLALKDILYVPNVS
KNLISVYRLCNANQVSVEFFPAHFQVKDLNTGARLLQGRTRNELYEWPVNQKSITILTASPSPKTDLSSWHQRLGHPALP
ILKDVVSHFHLPLSNTIPKQLPCSDCSINKSHKLPFFTNTIVSSQPLEYLYTDVWTSPCISVDNYKYYLVIVDHFTRYTW
MYPLKQKSQVKDVFVAFKALVENRFQSRIRTLYSDNGGEFIGLRPFLAAHGISHLTSPPHTPEHNGLAERKHRHIVETGL
ALLTHASLPKTFWTYAFATAVYLINRMPTEVLQGTSPYVKLFQMSPNYLKLRVFGCLCYPWLRPYNTNKLEARSTMCVFL
GYSLTQSAYLCLDIATNRIYTSRHVQFVESSFPFASPRTSETDSTQTMSQPTTTNVIPLLQRPPHIAPPTALPLCPIFHS
PPHSPSSPASPPSEHVPLTAASSSSNAINDDNISSTGQVSVSGPTSQSPHTTPTNQNTSPLSKSPNPTNTNQSQNSTPPT
SPTTSVHQHSPTPSPLPQNPPLPPPPQNDHPMRTRAKNQITKPKTKFNLTTSLTSSKPTIPTTVAQALKDPNWRNAMSEE
INAQMKNHTWDLVSPEEAKHVISCKWIFTLKYNVDGSIARYKARLVARGFNQQYGIDYSETFSPVIKSTTIRTVLEVAVK
RNWSIHQVDINNAFLQGTLNEEVYVSQPPGFIDRDRPSHVCRLNKALYGLKQAPRAWYQELRRFLLQAGFVNSLADASLF
IYNRHNTFMYVLVYVDDIIIAGENALVQAFNASLASRFSLKDLGPLSYFLGIEATRTSRGLHLMQRKYITDLLKKHNMLD
TKPVSTPMSPTPKLSLLSGTALDDATEYRTVLGSLQYLAFTRPDIAFAVNRLSQFMHRPTNEHWQAAKRILRYLAGTKSH
GIFLRSDTPLTIHAFSDADWGCDLDAYLSTNAYIVYFGGSPVSWSSKKQRSVARSSTEAEYRAVANTASELRWLCSLLLE
MGISQTTVPVIYCDNIGATYLCANPVFHSRMKHVALDYHFVRGYIQSGALRVSHVSTKDQLADALTKPLPRPRFTELNSK
IGVQELPPS
>ATCopia5#LTR/Copia 97-4454 Wised via estwise with ATCopia6 protein [Arabidopsis thaliana]
MTSTPSGSTETIAFSETPTLLNVNMANITKLTPTNYIMWNRQVHALLDGYDLAGYIDGSVTAPSEMITTAGVSAANPAYK
FWKRQDKLIYSAILGTITTTIQPLLSRSNTAAEIWEKLKSIYATPSWGHIQQMRQHIKQWSKGTKTITEYFQGHTTRFDE
LALLGKPLEHAEQIEFLLGGLSEDYKSVVDQTEIRDKPPTLTELLEKLLNREAKLMCAAATTPSLPATAHAANYKGNSNN
NQYNNNNRNNKSHGRNNNNWQQNQXNSDRXQYTPKPYQGRCQICSIHGHSARRCPQLQGSSYNSQQSIPASPFTPWQPRA
NAAIASPYNANNWLLDSGATHHITSDLNNLSLHQPYTGGEDVTIADGSGLSISHTGSALISTPSRSLALTDVLYVPNIHK
NLISVYRMCNANKVSVEFFPAHFQVKDLKTGVQLLQGRTKDELYEWPVNPPKPSSHFTTTTPKTDLTSWHSRLGHPSLST
LKVVVSQFSLPVSNSLQKQFNCSDCLLNKTHKLPFHTNTITSTQPLEYLYIDLWTSPIVSIDNFKYYLVIVDHYTRYSWF
YPIKQKSHVKDVFMTFKALVANKFQRKIIHLYSDNGGEFIALRSFLSSNGITHLTTPPHTPEHNGISERKHRHIVETGLT
LLGQASMPKSYWSYAFTIAIYLINRMSSDVIGGISPYKRLFGQAPNYLKLRVFGCLCFPWLRPYTTHKLDDRPAPCVFLG
YSQTQSAYLCLNRTTGRVYTSRHVQFVENTYPFTKPTLDPFTNLEESNNHSITTTVPSPPFVQLPSVPPPTRDPHQPPPS
QPAPSPSPLSPPSMSSPVMTSSPQFSSNRDSTTLHGDYSHVDYGLSSPSNPPGPITSPTTSKSPSEPTSSPSHSNQPNKT
PPNSPSSSSSSPTPIPSPSPQSSNSPPPPPQNQHSMRTRAKNNITKPIKKLTLAATPKGKSKIPTTVAEALRDPNWRNAM
SEEFNAGLRNSTYDLVPPKPHQNFVGTRWIFTIKYNPDGSINRYKARFLAKGFHQQHGLDYSNTFSPVIKSTTVQTVLDI
AVSRSWDIRQLDINNAFLQGRLTEDVYVAQPPGFINPDRPNYVCHLKKALHGLKQAPRAWYQELRGFLLTCGFTNSVANT
SLFIRQHNKDYIYILVYVDDFLITGSNSNLIAQFITCLANRFSLKDLGQLSYFLEIEATRTKAGLHLMQRRYVLDLLTKT
KMLDAKTVSTPMSPTPKLTLTSGTPIDNPGGYRQILGSLXYLGFTRPDIAFAVNRLSQFMHKPTDLHWQAMKRVLRYLAG
TPSNGIFLRAKNPLTLHGFSDADWAGDNEDYVSTNAYIIYLGGNPISWSSKKQRGVARSSTEAEYRAVANAGSEIRWXIS
LLTEFGIPLPTTPVIYCDNVGATYLSANPVFYSRMKHIALDYHFIRDNVQAGILRVAHISTNDQLADALTKPLSRQRFTE
INNKIGVIQLPPS
>Bhikhari-3_DR#LTR 614-2320 [Danio rerio]
MADITVEAVSQAVKAAPFLKLLFSLAQNLPVQPNQDISLPQDQNKVLYLKFEELKNELADLRRDNLKLKAEICRLSSETK
SLHAITESQEEQLEGVKTDMAALQTELVQTQTDFSAQTEELNSLRSRETRTKAEVRSALRDISELREKQEMDKEDWIREM
DWIVDQISEFEGARHFSPKHPESQTEHPRSFDSAGREPLLCSFENRKRYQGSDNVRARSGLSPSADPFSNYEVASNSHNT
VLSQPKSPSMPPPSDHLSLLKELACDIEVFNPETPGNSIELYLKDVHFALSYLPDITMSDKLFILRTTTTQAVHSFIDRQ
SPAISNDFNELCKALAAEFTLHENPYTSRLSAFKIKQGRHESPREYYERLREMYFAGKDYPDAEEDPLFKHLFVANLYPT
VRKQLALFNIEKTWASELRQLAIRAWDSGKVNADRKNKEYAYISEPGQDRKNKKFPAHLDVVSEPDQNRIPSKYKFFPQS
KSFDKNAKKPSAGEKRQHKDRRESRQKRKRDDPGNNWNMGNGIRQSRGFESRHDDDLLSKMHNMLQEHLKSLNSEEHSST
DRDQVTSA
>Tad1-16_BG_pol#LINE/Tad1 2093-5833  [Blumeria graminis]
LKGPSRVPSSLPPTISFMSINVGRGGQSHDIALSRAYELGVDVVLIQEPSWKKATKETKSHPGYDCHTPHGGVNIRPRAV
TYTLINRGXLSAXQIFPCNPPTADYCWVVVNGVTFLNVYKDPNDPTAIRPLLSWDPPPRSVAAGDFNAVHCAWQPEVTRP
RGQGIEIERWAERHNLTCLIVGEPTHRAGNTLDLAWTNVNGAQAWVGRSECVTSDHLPIRGQVPTGFGKRDHEPSPIRVT
RGNLPRFALAVTQFTHPPPVLDTVCQVDEYANDLCSGLTNAIKAAGTRRNKRHGKCAPWWTPECKLAHTEYRAAVTPEQR
WVHSKKLRSTLRAARKEHQTRQVEAITTPTDVFKLMRSAEPRQASTPPPLNHEGKVYSDPAERAAVLRDALLARHQATDD
LPPLDAPSTNRIPWNDHVSDEEIRMCTVGCANTAPGADGISVELLRTCWKTIGPFVGTLFRACIRLGTHPSCFKLAEVVL
LRKTNRDPATVKGWRPIALLSCLGKGLERLLAKRMAHLAVTLDVVGXQQFGALPKRSANDLVNCVVHDIEEASTQGWAAT
FTTLDVQGAFDAVLHNRLVRRMQEQGWPDSILRWTASFLAHRKVQVRYSGGVTGQRELVCGVPQGSPISPLLFLLYMAEP
MRSGNPGMRFSYADDVGILGFGRSIAESAASVQKEVDHLLEWASNNAVSFDTNKSEIVQFPGRKRENPVAIRVNGVTIEP
ADQIRWLGIHLDPRLDFKHHVTTWCXKALKVAQXMRRFNSAYRGAAPAALVRAVDTCIVPIATFGADVWWPGLKRPTRRG
IITPRTSIFCEMIDKAILTGLRAALPVMRTTPNLVLHREGGTPTGKIILEGNRLRLSARLHSLDNRHPLRTRAAVCPNVG
TRKYKKSARAPKNPGIQMSRVQRAYRQLPDAEDAEPLPPPCYLSSSGPRKEEEEKATRFLGGVLASDICAYPDGSSEGHG
RSAWGFVLKRDGKTLLKGCGIKHGGEVLDAEIVGAAKALEAALGLLERENGGSDGRRRINVLTDSQSAVKALLTGTATTS
LDDVRQFRALSEKARVSVQWIPAHSGIQGNEEADRAARSGLRQLPSKESQPGSVTLAYVRRLMNQKRQALLEEWWEEACP
PRYRNLGLLMRRRKPRELALSRRLLRELISARTGHGNFAACHRRFNNFTASMECACGEETTPLHFIHCRLHARQTRRLRG
TMSHHDFVXKLLGPKCLENFTNFAQETGCFGGPPAXPSPALSGDGXN
>Tad1-7_BG_gag#LINE/Tad1 67-1785  [Blumeria graminis]
MPPGRRKKARGVLQPLKPTVSGTSKIVKSRDANLTKTAVLEALTTRGXSKMDRLNENPQAENIEIDSDSELSSAPDDEIM
LDDTSSYPLIDVTPNVQESQTNPLSTPRKALQGLEHSIHAAPTSEALPLNDEATSPPATSNRRVTSHLSSNSINEYAASL
TAWQNAGAKYLKNLPPSIAADLRAITTRSAARVIAGLPVFDEPSCQKNTSINTTSNTSRPDQSAQVERVAPVVAPSYAVV
AHRGNNAPSPTNKTPAPKPSSQKPDARVIIRLPVEHPLRCEDPLLVRTKLRRLLSRPELIKDIRIVPTGLALVAPTPSQA
QELLEAAKDLKPITGEAPMERQEKRINYLLGPVPKYGYNSWGNREALTYEEIRQELEAEKISKDSIYAMSWTRRSNQSPS
SDGTLRLVLKASCAKSLPKNVRLFARAARLRPIEDRPQIPSCSKCHGFHNVNACTRRPRCGLCAAEPHDGVCSIPYKCLN
CHGPHPTATVSCPARPRRENGVFIRLNKERLRQIRQQGHKAWQAKNPPLIPQAPENQSAVPTPDLEMEGCASKTTSTQEV
PAQLSTPTTEIQL
>Tad1-22_BG_gag#LINE/Tad1 29-1617 via tfasty with HaTad1-2_BG_gag, 1 frameshift. [Blumeria graminis]
MAAMDFTIENHAPVTERGSCSFSIPSNTPPIPHSATPPSQPILPQHDVVVTDRPTLQPVPPSKRAIPESCHETTTENVND
ANEFLPRELAQIIEERQRRELAWHARIMMCTCAISSIESALSGFMKDIEKDEATAIRDYLCKAISKYAASEAAPTPPPIP
SNSRPVSNRAKGKDKDQTNKVGTTASTTTIRPSKEPLQLPSKPVNTKLSWATVTRNGHKKARATASSESLPITTTLKQVA
PQKEPIRSLAYHSAIKTTTGKAQPPISPDKRLFIRLPRDHEWRRLSPAGIREVVVKRLSVSPSLIGRIKAVNSGFAITPC
SNEAREELIKPENGLFLSGAKLEPATNWVPIIIPTVPAAIRTLEGRVEVNESMLTVEIERITNMRPSAVKLFGQNNPSTP
HRTWIAFFSKSPRPGFRVFDESGLARPFKKQEPLEFCKRCSGHHPSRNCSRAPSCGNCGSTMHTEDSCQALTKCRNCGGP
HRSDSTRCLTRPTRTGGPSKQQLKTYRDAGEREFQALARAREAEAKAASA
>Tad1-23_BG_gag#LINE/Tad1 611-1445 (fragment) via tfasty with I-4_AO_gag, 2 frameshifts and 1 stopcodon. [Blumeria graminis]
MERHKDWTTKLAASAKVAGPVYQVLVHDMPLSFEPQNAEHLKLLQKANHVIYKAWxYKDAAWLKKSQQPGKKSGSLILWI
DQAVHADMAIKKGLMWQYELKSTEIFRSGFRMMQCFNCQKYGHIAKICSADSKCGHCAGEHNTRNCTGKQDVRCSNCGKG
HKTWDQSCPVRAAAKNRAVQNRTQDPGMFLTDEKSTRNQDGEWQIAGSRKRRAVMTAPLVGADGSIDGRRRPGRPPKIPS
AVPTVAGLFANLSEVPSKMTPRPVTRGNQADETESEMDS
>Tad1-22_BG_pol#LINE/Tad1 1550-5399 via tfasty with MGR583_pol, 1 frameshift. [Blumeria graminis]
MQESENSKLSLEQEXQRLRLPPLRHRSITLQLVXSQPQTLEWQQHYLRRIRQVXQGVCEGRPTESPSPQQILRFMSINVG
RGGTTHGIALDRACELQLDVLLIQEPWWRGHTKAHPYFNVHIPHNGISIRPRAITYTRKNAKQIQAIQKFPSATPISDYC
WVEVNNTTFLNVYKAPHDPKAVQPLLEWVPSARTVVVGDFNSVHWAWQPSAVHTYGQGDEIEKWAETHNLSCLIIGEPTH
RAGNTLDLAWSNINGTCAWVDRQECITSDHLPILGSVLNQKQPKATARGPLRVPKDQLPHFALLVSRWAPPLAPLTSVEE
TEGFAEELCRAFKEAIKAVGRRPSPESGRSGPWWTPECKAAHVKYKGSLTEFERSSNAKHFRKVVRAAKRSYWKSRVEGV
KSLPETFKLLQWGSPKHAKIPPPLLHEGRFISDQAERAGILRDRLLSRHQATDDLTPCNQPGDARITWKEEISETEVQSC
TIGKGGSCPGADGISTELLAASWSHVGAHITHLFRACIQLGHHPSCFKLAEVVFLPKSGRDPSSVKGWRPIALLSCLGKG
LERIMAKRMSHLAVVSNVVGPQQFGALPKRSATDLVSCVVHDIEEARTQGWAATFVTLDVQGAFDAVLHNRLIWRMQAQG
WPDSVLRWITSFLKDRSVQVRYPGGITSPRKLICGVPQGSPISPILFLLYMAEPMHGGNPRARFSYADDIGILGIGRTVA
ESAALAQQEVNKLVDWAQENAISFETEKSEVVQFPGSRLENSVGIHINDTFIEPAEYIRWLGVYLDKRLSFKNHVEIWSG
KALKVAQLLRRINSVKQGAAPGLLMTAVEACVIPVATYGADVWWPGLTRPQRRGLVTPQTTHLCKLIDRALILALRAALP
VWRTIPIAALHREGGIPPARILLECNRLRLSARLQSLDDRHPLRIRARMCPNEGTIKYKRRKKLSSRPDTQMSRVQRAYC
QLPQAEDAEPLPGPVYWRNPGSKLEGVEDYQKWIRTVPPSEICAYSDGSSEGHGRSAWGYVLQRGGITFKKERGSLHGCE
TFDAEIVGAIGALRAAIIARQGGEKITVLLDNQAAVRALQTGSSSSTCRLIRIFHDAVQRSNAEIRWVPGHSNIEGNVEA
DKEARAALKLLPDSQKQPSYISLAYLRRLMQRRRQELIDKWWSTACPARYQDLDLQMRRRKPPELSLPRRLLHELIAART
GHGDFAAYHRRFKHEDANLVCSCGLEKTPTHFIRCRRYNTLTRKLGEDMSLDAFTRQLLGHKGLEKFKNFARVTGCFGRL
DAS
>ATCopia31#LTR/Copia 46-4050 ATCopia31A_pol >93% identical. [Arabidopsis]
MSEKESVIIPKFDGDYEHWAMLMENLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKTVKDHKVKNYLFASIDKTIL
KTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKIL
RTLVEKFTYVVCAIEESNNIKELTVDGLQSSLMVHEQNLSRHDVEERVLKAETQWRPDGGRGRGGSPSRGRGRGGYQGRG
RGYVNRDTVECFKCHKMGHYKAECPSWEKEANYVEMEEDLLLMAHVEQIGDEEKQIWFLDSGCSNHMCGTREWFLELDSG
FKQNVRLGDDRRMAVEGKGKLRLEVDGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHST
MTKNRMFVVFAAVKKSKETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQI
RESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLV
CLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSP
SKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILISRDVQFD
EERGWEWEDKSLEEELVWDNSDHEPAGEEGPEINHNGQQDQEETEEEEETVAETVHQNLPAVGTGGVRQRQQPVWMKDYV
VGNARVLITQDEEDEVLALFIGPGDPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVIGLKWIFKTKFNEK
GEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEE
ESSKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTLFVKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSM
MEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKLTKAGAGDAVDPTEFKQLIGS
LRYLTTTRPDLIFSVNLVSRYMESPNEQHLLAVKRILRYVQGTLDLGIQYERGGATELVGFVDSDYAGDVDDRKSTSGYV
FMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHI
HVRYHFLRELVKEGTIRLDYCTTTDQVADIMTKAVKREVFEELRGRMGVRRREE
>ATCopia89#LTR/Copia 91-4566 Wised via estwise with ATCopia72 protein + both termini extended with ORFs [Arabidopsis]
MGVPVRKSTRRLGRSVGAGSSGTKLKAPMSSNSPDPAPVVPIRSISEIDAVDDSPHSPFFLHSADHPGLTLVADRLDGTN
YTQWSSAMKISLDAKNKIAFIDGSLPRPAEGTPLSRIWSRCNSMVKSWLLNAVSKQIYGSILNLDDATMIWNDLHDRFHM
TNLPRTFHPIQQIQDLRQGSMDLSSYYTALKTLWDQLDGSEPTESCLCCHSFNCVSKRHYRGKVDRGRIIKFLAGLNETY
SIIRGQIIMKKPLPDIAEVYHILDQDDSQRKFGNSIVPAAFQVGIAGSHPGVVNADASSPSAGSLIAAYQSFKKDKPTCS
YCGFTGHVVDRCYKKHGYPPGWKPRKQQVNASPTPQSSSPAITAQVSATVGSGDKQDGGLDSLIGNLSKEQLQHFIAYFS
SHLTTQFPASVPLNEASTSGISFSPSTYSFIGILTVTQSVTNKRSWIIDSGATHHVSHDKSLFSDLDASVSQHVNLPNGS
VVMVAGVGTVIINTSISLKNVLYIPDFRMNLLSISSLTTDLGSRVIFDPASCLIXDPTKGLTIGRGRRIANLYLLDVEEP
ADSRQLSSYSLNDVIDSAVWHKRLGHTSFSRIDMLTDVLGISKQRNKGVIHCDICQRAKQKKLSYPNRNNLCSASFDLLH
IDVWGPFSEPTVEGFRYFLTIVDDHTRVTWVYLLRLKSDVLTVFPEFLQMVETQFDKRVRCVRSDNAPELKFTELYRRLG
IIPYHSCPETPEQNSVVERKHQHILNVARALLFQSNLPLSLWGDCILTAVFLINRTPSPLLENKTPFEKLTNTTPEYTDL
RTFGCLCYASTSPKQRTKFEDRAKACVFLGYPAGYKGYKLMDIESNVVFISRNVKFFEDIFLFQNSQASDEVDVTGFFPQ
ISTRVADPGESSGTRTEGEYSSTMRQGESNSESVIPNTEDTSRRRVSRPPGYLQDYQCYSVKESVKESTEHPISQVFSTD
NLSSSYCAYINALTKYPTPTSYTQASKVKEFCDAIKDEIGALERTNTWIVCAIPPGKTVVGCKWIYTIKLNADGSLERYK
ARLVAKGYTQKEGLDYVETFSPVARMATVKFLLSVAAPRKWFLDQLDISNAFLNGDLHEEIFMALLPGYVDKDGKPFPPN
SVCKLQKSLYGLKQASRQWFLKLSHCLMSMGFRNGTGDDTLFLRRTDDTYMAILVYVDDIIIASSSSTATASFTAALKES
FKLRDLGPLKYFLGLEVARTSAGISICQRKYVLDLLDETGLLGCKPSSIPMDPSQKLNLETGDLLTDVEMYRRLVGKLMY
LTFTRPDITFAVHKLCQFTSAPRQPHLTAVYKVLHYLKGTIGQGMFYSANSDLKLKSFSDADWGTCTDSRISVTGFCMFL
GPSLVSWKSNKQETVSMSSAESEYKAMSTAVKEMLWLRKLMNDLWIDASEASVLYCDNTAAIHIANNSVFHERTKYLDLA
CHLVRERVLMGQIKTLHVQTEHQLADALTKPLYPTLFLRLIRKMGVINIYTPS
>ATCopia79#LTR/Copia 23-4340 Wised via estwise with ATCopia47 protein [Arabidopsis]
MMDQSIQLYSPPVLHISNCVTVKLNEQNYSLKKTQFESFLSGQNLLGFVNGSLKPPPATTPFNNIDGLTIEVPNPEYHTW
NRSDQVVRAWLLGSLNEDIMQEVVNCATSYQVWNALAQHCNKVSSSRLFELQRKLQTIDKQDKSMETYLKEIKRVCEQLA
SIGSPVSEQMKIFAALHGLGREYEPIKTSVEGSMDTQPPPTFESVISRLTGFADRLNSYGPDTETSPHMAFNASRSDSSG
YYNNNNNRGKGNXRFGSGKSKDSFSTRGRGFHQQISQNSNGERVICQICGKPGHHALKCWHRFNNSYQDEDLPAALAILR
ITDVTDQSGGEWVGDSGSTAHITNAPHKLSQTQLYEGSDSVMVGNGNFLPITHTXLGSLPSTSGNLPLNDVLVCPDISKP
FLSVSKLTNDYPCVFQFDCDDVRIYDKATRKLLTKGKHSKGLYVLKDSPVQALYSSRQQGASEDIWHQRLGHPHSQVLQV
LSANKSISVGNKSTKMVCESCQLGKSVRLPFSASTXVATRPLERIHCDLWGPXPIKSNQGFSYYAVFIDNYSRFCWFYPL
KLKSDFTHTFTVFQDMVENQYQTKIGSFQCDGGGEFTSRKLTDHLQQCGIKQLISCPYTSQQNGLAERKHRHIIELGLSM
MFQSTRPQKFWVEAFYTASFLINLLPTTALDEKYSPYEKLHGKPPEYSALRVFGCACYPTLRDYASNKFDPRSLKCVFLG
YNDKYKGYRCFLPSTGRVYISRHVIFDETVFPFAQSHSRPNSGSLTPLMLAWTKGINTVSKPQPKSDDSLFTSEDFPPLP
TRETPILPIPIPRPTVVPAVEEERSYGCTAGLDHVPIGNNFSSSSHSPGIAEETSDQSTERILDQLSTTTTQNESQEEML
PSXEPVQEPVVTQSTHPMTTRQKSGIRKPNPRYALLTHKVSYPEPKTVAAALKDPGWTGAMGEEMGNCKEAETWSLVPYT
PDMLVLGSKWIFRTKLNADGSLQKLKARLVTQGYNQAEGIDYLETYSPVVRTATVRGVLHLATIMEWDIKQMDVQNAFLH
GDLTETVYMAQPAGFVDPDKPNYVCHLHKSLYGMKQSPRAWFDKFSTYLLEFGFHCSIPDPSLFVYSRGKDIILLLLYVN
DMLITGNSSETLASLLAELNKRFKMKDMGQMHYFLGIQAQFHSEGLFLSQQKYAEDLPIAASMSDCAPMPTPLLLQLNKQ
RKQNQDTFXNPTYFRSLAGKLQYLTLTRPDIQFAVNYVYQKMHAPTTLDFLLLKRILRYVKGTVTMGINFRKKSDCTLRA
YSDSDWSGCPETRRSTGGYFTYLGLNLISWSSQKQSSVSKSSTEAEYRTLSEAASEITWLSSIMKELRVPLLKPPQLYCD
NLSAVYLTANPAFHKRTKHFENHYHYVRERVALGLLEVRHIPGHEQIADIFTKSLPFNAFTSLRYKLGVVVPPTPGLQG
>BARE1_HV#LTR/Copia 1255-5219 Wised via estwise with TRSiTERT0010013 protein [Hordeum vulgare]
MAHARVTLNFNTFLEKAKLKDDGSNFVDWAHNLIKLLLQAGKKDYVLNAALGDEPPATADQDVKNAWLTRKEDYSVVQRA
VLYGLEPGLQRRFERHGAYEMFQELKFIFQKNTRIERYETFDKFYACKMEENSSVSEHVLKMAGYSSRLAELGIELPQEA
ITDRILQSLPPSYKGFLLNYNMQGMNKSPGELFAMLKVVEXELRKEHQVLMVNKTTSFKRNDKGKKGSSKKSGKPVANPT
KKPKAGPKPETECYYCKGMGHWKRNCPKYLADKKAAKEKSGIFDIHVIDVYLTSSRSSAWVFDTGSVAHICNSKQELRNK
RRLAKDEVTMRVGNGSKVDAIAVGTISLQLPSGLVMNLNNCYLVSALSMNIXGYCLLRDGYSFKSENNGCSVSMSNIFYG
HAPIVRGFFILNLDSDNTHIHNIETKRVRVNNDSAMFLWHCRLGHIGVKRMKKLHTDGLLESLDTCEPCLMGKMTKTPFS
GTMERASDLLEIIHTDVCDPMSVEARSGYHYFLTFTDDLSRYGYVYLMKHKSETFEKFKQFQSEVENHYNKKIKFLRSDR
GGEYLSFEFGAHLRQCGIVSQLTPPGTPQCNGVSERRNRTLLEMVRSMMYITDLPLSFWGYLLKTAAFTLNRAPSKSVEM
TPYELWYGNRPKLSFLKVWGYDAYVKKLQPEYLEPKAEKCVFIGYPKETVGYTFHLKSEGKVFVAKNEAFLEKEFLSREL
SGRKIELDAVVEPLIPLDGGARQGETPVVVMPGXEEVNDDDHETPDQVPVESRRSTRPRTTREWYGNPVLSIMLLDNNEP
TNYEEAMMGPDSNKWLEAMKSEIGSMYENKVWTLEVLPEGCKAIQNKWIFKKKTGADSNVTVYKAXLVAKGFSQVQGIDY
DETFSPVAMLKSVRIMLAIAAFFDYEIWQMDVKAAFLNGLLKEELYMMQPEGFVDPKNANKACKLQGSIYGLVQASRSWN
KRFGEVIKAFGFIQVVGESCIYKKVSGSSVAFLILYVDDILLIGNGVEFLENIKDYLNKSFSMKDLGEAAYILGIKIYRD
RSXRVIGLSQSTYLDKVLKRFKMEQSKKGLLPVLQGTRLSKTQCPATDKDIEHMSTVPYASAIGSIMYAMLCIRPDVSLA
ISMAGRFQSNPGVDHWMAVKNILKYLKRTTEMFLVYGGDKELAVKGYVDASFDTDPDDSKSQTGYVFILNGGVVSWCSSK
QSVVADSTCEAEYLAASEATKEGVWMKQLMTDLGVVSSALNPITLFCDNMGVIALAKEPQFHKNTIRIKRRFNLIRDYVE
EEDVNICKVHMDLNVXPLTKPLPRAKHDQHQKCMGVRFIIM
>Copia4_MT_env#LTR/Copia 5562-7939 5562-7939 (1 frameshift; similarity to SIRE1_env; potential ENV) [Medicago truncatula]
MARTKTTPRLSEEHFQPPPSNTAADQTSDQQLLSETPVRTILQDVIIPASENPKSSKTRSSKKPIIKPRPIPTRRSTRMK
KPLKKPKVSHVNLDSDEEKEDDEDSEDETEEDPEEEDEDSEQTLSDAMKSVKASSKRDKELTKIILQRRKEIAAEAMPLS
EEKTSEDEEASEEKNLKKRLKxEEEKGSSKKHGKGKDITKLAATLKASRAEKIALRPMCRTKYFNLESLETKAWNMKEFT
EPQGWTNFITLQEHTYEDLVREFYTNLSVQEKKNGNEKFLISSVKGVKIKMTQEFVSEAFKIPNEGNQLYSSFWFDESRV
NRNKLIVKYTKENHTFNSTNLEDTPKILHNMIRHCLLPRCGSFELVSDIDLCFIYHLMKKIKLNLCFIIIQHMIDSCLAI
KQTSAGLPYGMHLTSIFQKAKVPLEGEKRKLDFMTFSSKTLGQLHITSSNMPASKTSGPSGSGKRNSDQNVQKAVKKRRV
EEITDTKTPSPPAENLFSEVSKLAKEIVDGETQEVAELLASNMNIEEEAQDVEFSTGFDLNIEDINIDFNSELFQDGQET
TQQAPEGQNVEIPAVQNVQKVETSAGQNVAVTEAQNDEGIHVMADQDNQELDDQHASNELPPDGQLSVDPMPLASGSLPS
EEVQLMAQNGQNVNPSSSSMDSVAGATNFLVSDLPTPPFIPSSTPPPPQMKTTTRSKLPNMAALFDSLNTFVSANRVQAV
ASGPAEPAKPSRAEKIASRALRVSTKTHKIACVLADWTVKVHAPGLAIPPPVFDDPSIFEAEPSSDSGDSTP
>Copia1A-VV#LTR/Copia 42-4522 via tfasty with Copia17-PTR, 3 frameshifts and 1 stopcodon.  [Vitis vinifera]
MDAQRGSNHERVSEIHSSMGPVGAFDNSPLHLTIEKLNGKNYREWAQAIKLVIDGKGKLGFLTGETRRPPPTDVAASQKW
RSENSFITSCLSNSMKPSIGKTYMFLPTAKDVWDAIQETYSDAENASQIFEIKTRLWQMKQGDREVTEYYTEMLGLWQEL
DLSCEEEWECTGDSVRFKKKMENERVFEFLAGLNRELDDVRSRVLSARPLPSIREVFSEVRREESRRRVMLDHSVGPEGS
ALLTYGPHGPHGPYAIAGRGHSVGLEGSALLTYGPHGPHGPYAIAGRGPSVAGSSGPSPRQSKRTYCEHCKKLGHTKDTC
WALHGKPADWKPRQPNKAHSHQASTEAQADKTPTEVCQSTSSVGFNSNQIAKLYELFSNFQASGQSSTTLSSGSLAKKGT
FLTALSTMSQTIPWIVDSGASDHMTDAHHLFSTYSPCAGNLKVKIADGTLSPVAGKGSIRISESITLNPVLHVPNLSCNL
LSISQLTKKSNCSAKFLSSHCVFQDLSSGKTIGSAKEREGLYYFDETDVLGQSSPTVCNSTSYSKDSELLLWHKRMGHPS
FQYLKHLFPSLCSNKTILDFQCEVCELAKHHRTSFPKSKYKPSIPFTLIHSDLWGSSRTPNRTHKKWFITFIDDHTRLCW
VYLLTDKTEVRSVFMNFHYMIQTQFHTKIQILRTDNGTEYFNHSLSTYLQENGIIHQSSCVDTPQQNGVTERKNRHILEV
ARALLFSSHMPTQFWGDSILTATYLINRMPSRVLSFVTPLQKFHEFFPHSRLDAHLPLRVFGSTVFVHIHGPKRNKFDPR
ALKCVFLGYSSTQKGYKCYDPISQKLYVSLDVTFFEHTPYYSLQGESMSETRPSLTSDYLDVAMFESTPCFISNPSHNTE
GHLNLGGDMELQTNRETLVYSRRPKSKFNETLISEALQESESVIVPTPREYDFNSDQVTDDLPIAIRKQPRSCTLHPISN
FVSYNSLSAKCRAFTTNLDRIQLPKNIQEAFEIPEWKEVVMEEIRALEKNETWEVMNLPRGKKPVGCKWIFTVKYKADGT
VERYKARLVAKGFTQTYGIDYTETFAPVAKLNTIRVLLSLAANLDWPLHQFDIKNAFLNGELEEEVFMMLPPGFCKEEEE
TRVCKLKKSLYGLKQSPRAWFDRFAKVIKNQGYQQGQSDHTMFFKQSNDGRMTILIVYVDDIILTGDDTGEVERLKKVLA
TEFEVKDLGQMRYFLGMEVARSRKGNxYFPKRKYVLDLLTETGMLGCKPSDTPIKARNRMESDGKPVDREKYQRLVGRLI
YLSHTRPDIAFAVSVVSQYMHSPKESHLEAVYKILRYLKGSPGRGLFFKKSDSKKVEIYTDADWAGAADDRRSTTGYCTY
VWGNLVTWRSKKQSVVARSSAEAEFRAVAQGMCEGLWLKKLLEELCITIELPIKLYCDNKAAISISHNPVQHDRTKHIEV
DRHFIKEKIEKGIICMTYIPTREQLADIFTKGLQKSSFEDFIGKLDMINIYDPT
>ATCopia73#LTR/Copia 101-4492 Wised via estwise with ATCopia72 protein [Arabidopsis]
MVKAARVTLKSTRSKSVASSVASSIVRRSTRSTSDGNVSPLIDHPAAISQVSGLPRGVPSPDLSDPTQSPLFMHSADHPG
LNIISLRLEETNYDDWSYAMRISLDAKNKIGFVDGSLPRPLSIDPMFRAWSRCNSMVKSWLLNAVSPQIYRSILXMDDAS
DIWCDLCGRFHLTNLPRTYNLTQEIQDLRQGSMTLSEYYTRLKTLWNHMDSSEEPDDPCVCGKSARLQLKAERAKTVKFL
AGLNESYAIVRRQIIAKKVLPSLVEVYNILDQDDSQKVFTVATPPSTFQISQATPTHDDSVVPDVMYVQNGPNKGRLICS
YCNRVDHIAERCYKKHGFPPGFTPKGKPTDKAQKPSPVAAQVTLSASPAPQGNIAGLQGTLSNDQLQNIIAHFTSQLTTQ
SPLGASTSQSALDHTGISFSNSTYSFVGILAVSQHTLSRNTWVIDSGATHHVCHDRNLFVSLDSSVVNFVNLPTGPKVRI
SGVGLVRLNKDILLQNVLFIPKFRLNLISISSLTSDIGSRVVFDPSCYEIQDPIRGLMNGKGRRIGNLYVLDTESPSVSV
NAVVDIGMWHKRLDHPSFSRLDVISEVLGTTRHKNKKNAFCHTCHLAKQKKLSFPSENNICNSTFELLHIDIWGPFSVET
VEGFKYFLTLVDDHSRATWIYLLKNKNDVLSIFPAFITQVEKQYNTKVKGVRSDNAKELQFTQFYKDHGIVSYHSCPETP
EQNSVVERKHQHILNVARALFFESKMPLSHWGDCVLTAVFLINRTPSQVLSNKTPYEVPTGKPPDYTRIRTFGCLCYAST
SPQQRHKFQPRSRACVFLGYPSGYKGYKVMDLETNKVYISRHVEFHEDSFPMADLNKEAAVNDADNDLQQMNSLPSGNSI
IPHLPSPQISPSTQISSHRARKPPAHLNDYHCYSLDNDVTQHPISSSLSYFKLSPSRLLYINSITQIPIPQSYSEAKNSK
ELCGAIDKEIGAMESTNTWEITVLPPGKKVVGCKWIFTVKFYADGTLERYKAKIVAKGFTQKEGLDYNETFSPVAKMVTV
KMLLKISASKKWFLNQLDISNSFLNGDLDEDIYMRVPEGYAESKGIILPKNAVCRLKKSICGLKQASRXWFLKFSASLRQ
LGFIKCHGDHTLFVRPYGSEFIAVLVYVDDIMIASTTQEGATQLTEALKQSFILRELGPLKYFLGLEIARNDSGISICQR
KYALELLTSSGMLGCKPSSVPMIPNQKLLKTDGELLEDKELYRSLVGRLMYLTITHPDITFAVNKLCQFSSAPRTSHLTA
VYKVLQYIKGTVGLGLFYSSDPDLTLTGFADSDWASCQDTRLSTTGFTMFLGSSLISWRSKKQPVVSRSSAEAEYRALAL
ASCEMSWLVILLVGLRIGPSSVSVLFSDSTAAIYIATNPVFHERTKHIEIDCQTVRDKLDAGSLKMLHVRTEDQVADILT
KPLFPQQFNHLQSKMSLINIFGSS
>ATCopia36#LTR/Copia 101-4170 Wised via estwise with ATCopia63 protein [Arabidopsis]
MQGSSHQVIPIFDGEKYDFWSIKMATIFRTRKLWSVVEEGVPVEPVQAEETPETARAKTLREEAVTNDTMALQILQTAVT
DQIFSRIAAASSSKEAWDVLKDEYQGSPQVRLVKLQSLRREYENLKMYDNDNIKTFTDKLIVLEIQLTYHGEKKTNTQLI
QKILISLPAKFDSIVSVLEQTRDLDALTMSELLGILKAQEARVTAREESTKEGAFYVRSKGRESGFKQDNTNNRVNQDKK
WCGFHKSSKHTEEECREKPKNDDHGKNKRSNIKCYKCGKIGHYANECRSKNKERAHVTLEEEDVNEDHMLFSASEEESTT
LREDVWLVDSGCTNHMTKEERYFSNINKSIKVPIRVRNGDIVMTAGKGDITVMTRHGKRIIKNVFLVPGLEKNLLSVPQI
ISSGYWVRFQDKRCIIQDANGKEIMNIEMTDKSFKIKLSSVEEEAMTANVQTEETWHKRLGHVSNKRLQQMQDKELVNGL
PRFKVTKETCKACNLGKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETF
ATFKKFKALVEKQSNCSIKTLRXDGGGEFTSREFNQFCEDEGINRQVTLPYSPQQNGAAERKNRSLVEMARSMLVEQDLP
LKLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWCGHKPNVSHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQTKG
YRVFLLEDEKVEVSRDVVFQEDKKWDWDKQEEVKKTFVMSINDIQESRDQQETSSHDLSQIDDHANNGEGETSSHVLSQV
NDQEERETSESPKKYKSMKEILEKAPRMENDEAAQGIEACLVANEEPQTYDEARGDKEWEEAMNEEIKVIEKNRTWKLVD
KPEKKNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGIDYLETFAPVSRYDTIRALLAYAAQMKWRLYQMDVKSAF
LNGELEEEVYVTQPPGFVIEGKEEKVLRLYKALYGLKQAPRAWYERIDSYFIQNGFARSMNDAALYSKKKGEDVLIVSLY
VDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEKYANKLIDKFGMKESKSVSTPLTPQGK
RKGVEGDDKEFADPTKYRRIVGGLLYLCASRPDVMYASSYLSRYMSSPSIQHYQEAKRVLRYVKGTSNFGVLFTSKETPR
LVGYSDSDWGGSLEDKKSTTGYVFTLGLAMFCWQSCKQQTVAQSTAEAEYIAVCAATNQAIWLQRLFEDFGLKFKEGIPI
LCDNKSAIAIGRNPVQHRRTKHIEIKYHFVREAEHKGLIQLEYCKGEDQLADVLTKALSVSRFEGLRRKLGVKPRYD
>ATCopia35#LTR/Copia 139-4107 Wised via estwise with SC-4 protein [Arabidopsis]
MLNATNYTXWAMRMRRALKVHKTWDVIEKVTEPFDEDKSDVACTLLFQSIPEXISXRIGELETAKEVWDSIKARDVGVER
VNDARLQTLMAEFHRLKMKDSHKIDDFAGMLSEISVKSAALGVIIEESRLVKKFLKSVPRKRYIHIVAALEQVLDLNAIT
FDDIVGRLKVYEERVYDEDDPEEDQSKLLYSSMDSSKRESEGXGGRGSYRGRGRGRNGGRDASHITCFRCDKIGHYASYC
PDRLLQLQETQENDNKETQVADELMMHEVVYLNEQSCMPSSFETNVDGENVWYLDNGASNHMTGDRRYFDKMDHSITGKI
RFGDDSRIDIKGKGTIAFIDLNGKPRVMLDVYFIPELKSNIISLGQATESGCEIKLKDGYLTMHDQEGKLLVKAERSRNS
LYKVKMGLRKEACLYLTSTSMSSLWHARMGHVSLITLKSMIDKELIQGAPSLVIESEVCGSCLLGKQTRQSFPQATVFRA
TKKLELIHGDLCGPITPKTSVGNRYIFVLIDDYSRYMWTVLLKEKGDAFFKFKNFKALVEKESGEKIQTFITDRGGEFVS
GEFNSFCERTGIRRHLTAPYTPQQNGEVERRDRTLLEMARSILKHMHMPNYLWGEAIRHSTYLINRVATRALKDRTPYEC
FREKKPIVDHIXIFGCTAYAKIDKQFLKKLDDRSRVLIHLGTESGSKAYRLLDPQTKKVVVSRDVVFDETKGWNWTQDDS
TQDGEGSFKVMIEDFGDHELKEKEGDADTDQISPEQNDDSNSETSQEAIEEATESSESVSPLQALRRSTRQVSRPKYLED
YVLLAEEEGEMLLLTLNNEPRCFYEAREHKEWIRACEEEINSIERLETWNLVNLPVXVKPIGLKWVFKLKRNSDGSINKY
KGRLVAKGYVQKYGVDFEEAFAPVARIETIRLLIDLAAAHSWEIHHLDVKTAFLHEELKEIVYVLQLEGFEKFGKEDKVY
KLKKALYGLRQALRAWNNKLNHILVELLFKKCSKEPSVYRKEVKGNLLIVVVYVDDLFVTWTSLELINKFKREMSAKFEM
SDLGKLTYYLGIEVTQHNEGIILSXSRYALKILEEAGMKDCNLAHTPMEIGLXLEKSENEKEVNTTDFRRNVGCLRYLLH
TRPDLSFCVGVLSIYMQSRRESHAAAMKQCLRYLKGTTTLGISFTRSMEIPRLVGYSDSSHNVDPDDGRSTVGHIFYLGK
GPISWCSQKQDTVAMSSCEAEFMAGTEATKQAIWLQDLLSEITGTSSESVTIRIDNKSAIALTKNPVFHGRSKHIHRRYH
FIRXCVENGQIEVERVSXDEQKADILTKALGRSKFKEMRSFIGV
>ATCopia37#LTR/Copia 90-4111 Wised via estwise with ATCopia56 protein [Arabidopsis]
MSSNARVEVDRFDGTGDFSLWKVRMLAHYGVLGLKGILNDEQLLRDPPVIEEEAAVAGRDYHVGDFELPSNVDLIKFEKS
EKAKDLIVLNVGNQVLRKIKNCETAAAMWSTLKRLYMETSLPNRIYLQLKFYTYKMTDSRSIDGNVDDFLKLVTDLNNIG
VDVTEEVQAILLLSSLYDRYDQLKETLKYGRDTLSLNEVIGAAKSKERELTESGKLXSEGLYVEXRGRSEKRFEKGKGKP
WRGRSKSKGRSKSRPKYNKNNKGCFICGKEGHWKRECPEKSSQXSSSANIATEPKQPLVLTASPQDTKEEWVMDSGCSFH
ITLDKDSLFDLQEFDGGKVLMGNMTHSEVKGIGKIKILNPDDYVVILTNVRYIPTXEKSGCKYEGKDFIVTFYKDGQKVI
SGKYQDGLYYLEGKVVKGEVAVARPDIDMTSLWHSRLGHMSLKNMNVLVEEGYLSGKEVDKLEFCESCVLGKSHKQSFPT
AKHTTKGILDYIHSDLSGSPSTPESLGGCRYFVSFIDDFSKKVWVYFLKTKDEAYHKFREWKQAVENQTGKKIKYLRTDN
GLEFYNTQFDNLCKEDGIKRHRTCTYTPQQNGVSERMNKTIMDIVRSMLAETGMSQEFWAEATSTAVYLINRTPNSFIGF
KLPEEVWTGTKPDLSHLRRFGCSAYVHVTQDKTSPRAVKGVFMGYPCGIKGYRVWLPKEGKCTTSRNVVFNETELYKDTL
SSADERKEEAEKEYKKLKKARKRVSFSHDLLRGPSTSCCDLDDSSSQGGETSSSSSESSENLEESEMNEEVVGSENEQSL
DDYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYEEALKSSKRKQWENAMKEEMDSHKKSHTWDLIEKP
EKQKLIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQQEGIDYNEVFSLVVKHVSIRLMLSLMVNMDYELEQMDVKTAFL
HGNLEERILMSQPEGFIQEGNENKVCLLRKSLYGLKQSPRLWNQRFDAFMKDQKFERSCYDPCVYMRDTQTDKAIYLLLY
VDDMLIASGNMAIIQELKNKLNCEFEMKDLGXASRILGMDIIRDREKGELILSQGNYLEKVLKXFGMLEARPVITPTAAH
FKFRSLSEEEKKTEAVHMERIPYANVVGSLMYAMVGSRPDLAFVVGFISRFMSSPGREHWSAVKWVLRYLKGAYTQNLIF
KKDSKFCIEGFSDSDYATDLDRRRSVTGYVFKVGGNTISWKSSLQSVVALSTTEAEYMALTEAVKEAIWLKGLCSELGFK
QDNVMVHCDSQSALALAKNSVHHERTEHIDTKXHTTVNPTDFLTKTVPGQKFQLCYELLNI
>ATCopia66#LTR/Copia 29-4145 Wised via estwise with ATCopia10 protein [Arabidopsis]
MAMTNEASLNSGLKASFQVFNENSDFSLWKTRMKAHLGLAGLKGVIDDFTLTKFVPLTKSEGKKVEEGDDDGSESSQTKE
VPNLVKMEKSEQAMNVIIAHVGDVVLRKIDHCKSAAEMWETLNKLYMETSLPNRIYVQLKFYSFKMNDTMSINENVNEFL
KIIAELSSLEIVVGEEVRAILFLNGLSSRYSQLKHTLKYGNKALSLQDVISSVKSLERELNESLDLERSSSTVLYTTERG
RPLVRNNENNQNNQKGGQGRGRSRSNSKTRVTCWFCKKEGHVKKDCFARKKKMETEGPGEAGVIIEKLVFSEALSVNDQM
VKDLWVLDSGCTSHMTYRRDWFCDFQENGSTTILLGDDHSVESQGQGSIRVNTHGGSIKILNNVKYVPNLRRNLISTGTL
DKLGYQHEGGAGKVRYFKNQVTALCGSLVNGLYILDGETVMTESCAAVDSQSKTALWHSRLDHMSLNNLKVLAGKGLLNG
KEIKXLDFCEHCVMGMSKRLSFNVGKHDVVEALSYVHADLWGSSNLSPSLSGKQYFLSIIDDKTRKVWLYFLRTKDETFD
KFCEWKELVENRVDRKVKCLRTNNGLXFCNTKFDRYCKTHGIERHRTCVYTPQQNGVAERMNRTIMEKVRCLLNESGLDE
SFXAEAAATAAYIINRFPASAIDHNVPEELWLNRKPGYKHLKRFGSIAYVHHDQGKLKPRALKGVFLGYPAGTKGYKIWL
LDERKCVISRNVIFREDMVYKDLNKDVNDAVAEDAEASTSNSDVISELVKKRVSSKQGGVITELVEVCESESEEDSEEPA
ETAVTQSPEPSGLTNYQLARDRTRRQIVAPVKMKDYSQFAFALMTYEILNVEEEPQCLHDAQKDENWELWNGAIGEEMDS
LTKNGTWELVDRPKDRKVISCRWLFKIKVGIPGVESKRYKARLVARGFSQKKGIDYQEIFALVVKHTSIRGLMFVVVNLD
LELEHMDVKTAFLHGELEEELYMEQPEGVVSVGNEDKVFLLKKSLYGLKQAPRQWNKRFNKFMTDEKFQRSDHDQCVYVK
TMNNGELVYLLLYVDDMLIAAKNMSEVNKVKKRLSSEFEMKDMGPANKILGIXITRDRVNGVLCLSQAGYLKKVLKRFNM
SNCKSALTPIGTHFKLASVQDDSECIDTVKTPYSSAVGSVMFAMISTRPDLAYAIGLVSRFMSKPRSVHWEAVKWLLRYI
KGSQDLSLVYTKGKDLSVIGYCDSDHGGDLDRKRSTSGYVFTVGGNTISWKSCLQSVVALSSTEAEFIALTEAVKEAIWV
KGLLEDLGFQQDKAQVWSDSQSAICLSRNSVFHERTKHMARKRSFLSEIIEEGNIEVVKIHTSINPADMLTKYIPVKSFD
SALDTLKLIEWK
>ATCopia42_env#LTR/Copia 3494-4711 via tfasty with ATCopia41_env, 2 stopcodons. [Arabidopsis]
MNAIFSGLQRLVQQRSVTPSSNLSEAASEEHPSQSLKAEEEENLNKAMVLYAEPEPTSLRSELPNKENQDEQAAVSPEPP
VIVELPDECESTVVHVHRSETPIQAETRNQTCDQVPPLNNENPQVVQISDASESAQAVDSTDLSVSSRLLKRKQSAVVER
MKRQKTNERKEAAGSSACGEIGLQRLATYHSxCxEEVEDDSVKVCVRGMEYEFSPAKINVLFGLQSVDARAQQMQIAGLM
DDEVTSYLTDGQVKVLQSLPMSTFSKNCRKLFKFSCRNWSPTTSEGYASTDRALLVYQIAHKLAFDFGKMVYEHIMQLAL
KPEAKFYIPFPSLVYQLLQMQHPVKFHVEKPEPLVQTKKKTAKKPSTQGVQTGDSTNGSGHRRAMKLAIEVLQTALDAGK
CFSVFL
>L4_pol#LINE/RTE-X  249-3560 Closest to L5_pol and then (32% id, 50% sim) RTEX-1_ACar_pol in the Anolis (lizard) genome. [Mammalia]
LRFLSWNVAGWGPKGKDPDVLAFLMGFNIICLQETWILEHSSPHIXGFRPFXSPAVGEXNFGRGKGGLATLISVNLRGTA
VELPGSYDRNLFLPVLIRFPGKLDVICLNAYIPPAKAHAVCLDIWSHFDDLLTFIYSTYPTAELIISGDLNARIGGGSDG
ALPGAXXEWEDCFPVGHSSRDRCINLNGKFLTKLIYEQNLVVLNGSTWDKSGGNFTYISTPGASVIDYIIVSPSLLTTIL
RMDILDRVESDHFPLVLTLGIAVPEPVCTHDWTGEIRGLRRVRWXEGLSNSIGDLLLSEDLLKLRLGCLEGEVSPLTSYQ
RIADNLKPVLSAPCFGKRGXRPSSXWFDKDCQXAKKILARLVRRHAKRXSEEATRDLXKFKSYYKLLIASKKLRYNKSXW
EDLSLAVRXGNEGRFWDIVTRGMNLVSEVVEAQIPIDAWEAYFSQLYKPRSTAPNFVDPRPLSDWVPVMLPHIVQLIKKL
KLNKAPGEDFLPPELFKXRSEWWAPILANLFTFINSTGMVPSGWTQSVVYPIFXKGNPLLPPNYRPISLLDIPSKXYASF
LLDKLQVWVSQANILHEEQAGFRHGYSTIDHCYTLYHLVEKSVRNNVRLFAAFIDLSSAFDSVDRNRLWAKLHELNIDSR
LLMLIQNLHLNTTARVRVGRNGLLTDQITISSGIKQXCVLPTLLFNLYLNDLIPLLDELDACPPAIXNRKISILLYADDM
VLLSRTRSGLXRQLVLLSNYCQKERLKINYSKTKIIIFGRRSPTFNWLISNNSIQQVNSFSYLGVHFATNSSWRVHQEAT
LLKIRRSTGALLRFFYGRGGRLVTPALKIFQAKIISAMLYGVELWGLDRXFVXVLEQIQNCFLRKILALPAGTPAAHLRA
EVGWPSIRARXLVRLLNFHXRMSTLPPARLVSKAYGSALNQQHRIXALQALVREYNLELSAIQLLSKARLREMIFXEDCL
KDMQSIHSSRYSKFYPWIKPDHQKAAYLDHIXLAPCRXAFTELRFNVMPSAFIEGRYKKQPYEXRXCIXCKXVVEDIVHY
ITQCPLYEXPREKFLLEFSARKSFVSPEXLVCFLLSDNENYVTXHVSLFALAARKLRAKFXAQS
>RTE-5_PPac_pol#LINE/RTE-RTE 114-2867  [Pristionchus pacificus]
MPPSMGRHFYIGTINARTLGPKDKQTEMELALDKIKWDVIAVQEARIVGCASFNLTSSGTVVYHSGGPTASHGVAFLLRP
HLARGAVFRGLSPRLATLHLPDQRLFLVNAYAPTSSYDDDAYDAFIDQVETALRSAPRGTMPVLVGDFNCRVAREPGNER
FVGNSASQSPNSRGRTFTEALVRNKLRAWNTFPKRRHGRTWTWRSNDGVTYHQIDFLAAPPSARVVNCGVVGRFEFNSDH
RLVRMCLSLSGKVRQKRCREKLDFDRASFTVNASLLASLPLASPTSATDAYCNIKAFTDAAAANCWRKRHTPPWISRATR
NLLALRHQLQANSQGPVAYAVACKSARMSLAEDIRKRKEAQARQAALMGRSIVKEILKLQSTKKRLLVPDPASGALSQSA
TKAAVKDFYEDLYSPAVQIPLAVPPHSLDPFPPFLPDEARHAMSLLKCGHSPGSDGILPEMLYHSRDHLAHSIAHLLNRL
VAGDTVPCELSEAVVSLLFKKGDPTNIANFRPISLLTVTLKVTTRCILKRFEAVLEETESATQTGFRRGFSTLDNLHAIK
QVAERTSEYGIPIYLAFVDFKKAFDCVEWSACWNSLWKYGAHPTLIHLLRRIYESSTTLIRVNEELVPVTVKRGVRQGDT
LSPRLFNVALRSAMDTIDWEEDGIRIDGRNLSHLEYADDVALVAKTRPELERMLRKLMDACRRVGLEVNATKTHLLTSCK
TTRAPITIQNLTFNFVDSTTYLGGRISLPLDHTDEIEHRIRLGWLAWSKLSHLLSSRLLPMKTRRRLFESCITSTVLYGS
EVWALRSSDKERLSITQRKMERKMLGVALRDRWRNERVREITKLRDWNREALRRKARWALKVRSMQMEQWTRATTFWTPY
NRKRPPGKPRARWRDDLDRAIGNWWNTPHEDFAPILI
>RTEX-1_ACar_pol#LINE/RTE-X 1599-5066  [Anolis carolinensis]
LSESSILIQPGQPEHLETVRPIQIVTWNVAGWKEIVDCELVRFLSDFEIIALQETWLVEGVDPIQLPGFQCWHTPAQKRG
NKGRASGGLCICIKEELQWQGERLCKGDDIHNILAIKFSYKEMELILINVYIPPLTSSYYSPDAWVQLEIIVEELTVAYT
QAIIILLGDFNAKLGPSIHDLAQYGGLPHDFIKNHPKWYSRDKKINRSGISLASLILKCNLQILGGKNNNNNYNYVYPYT
FHSSHTSSALDFICVSTGKANLFSQIKVLLREESDHQPVCVKFLGPSDLRPNNRNDNWIMANTEVIQNKRLAWTKVDMTA
IANSLKTEDITNWNSIIQSHSADWQTVSNAFTNICGSLKEHLVTKSTPKGPYLSRAPWFDKECQLQRTKLRLAMRRAQGQ
HLVNPQLEMLTLRREYKKLIKTKKKNHTVSIWSGLECSAKSHNSAIFWHTVAGILKERKFTFDIPIPAEDWENYYSHLFA
STEPTETQSRGKDLSIKALPLWPPVTEDEIRCIINNLKTNKAPGEDYLPAELFKTHLDWWAPLLAGLFTHINNICQIPVG
WKMAIVVPVYKKGNKKDPGSYRPISLIDIVAKIYARYLLNRAECWEKEKHILVEEQAGFRQNRSTIDNCFVLNHTIAKYV
SRGKQLYAAFIDLSAAFDTVNRETLWKKLTDLNMEPRLLALIKALYTNTFLKVRFGTQGAMTNSVETYKGVRQGCILAPL
LFSLYVNDLPEQLKDPEVHMPKLCKTHFNILLYADDMILLSYSQVGLRRLLRRFNTYCHNNALTINKSKSKIMVFGKRHN
RHRWFLDGESIEQVCTFTYLGIVFSETGSWLPHHQRSSVRARVRVNQLLKLTNHSQPGSLDPLLKVYKAKVTPMLLYGAE
VWGLNQVPLLEQSQSQHLRSFLGVDRTTPAAAVRAELGVYTVDGLSKIRAYNYWIKLIAMANDRLPKLCLLEQIENQHQS
SWLVHLTKYISSCGLPIRYPNLLEELDPKIVAQRVLDIEGQKDIATLSKAGSLKWLSRFKHTFQTARYLKTEMPKHLRRV
FTRARFEQLDTMVKHGRFNQVPYNERFCICGASEVEDIAHVLFSCELYKKERHQCLGPYIIHKTHWDPHIKISFLLAGQN
PKITHKTALFLFKATQLRIAYLESIGVNCAGDADI
>RTEX-1_Crp_pol#LINE/RTE-X 2..2116[Crocodylidae]
NRKLKWDTHLAKKVTDKLHAXDLSILRNLVIVTQIPEEILEHCQQIKDLLYSLLSVPVTSHPIQTFKERGASWFDKECVE
QKRTLNRKARELRKTGYTGTTFWSEXRKLWKAYKLLLQNKKKEYYNQQWDKLRSAIIAKDSKTFWLLVSKGTANXNYNIE
NNITADSWVEYFSNQFTSSMEQINSNQGGNIPITDTTKYRVTKDQIEHLLKVQRKNKAPGPDRIPVEVYIDNIKWWTLVL
EKWYNSIIELGQIPDSWKGSTIVPIFKKGLKDKPESYRPISLIDVSAKIFGCHLLYHLIAWVKGENILHEHQTGFRDGYS
TIDNIFILQFLRHKYMQMHKSALYVAFVDLSRAFDSIDRSKLWEKLINYGIDPSLLHLLIEYYKDTWAQVRWGLKGELTQ
KIHIQKGVRQGCILAPLLFNLYMNDIIGNMQDAHFHPPKLLATPIPILMYADDTVILSRTPIGLQRAITTFEHLCGQNNL
KINYDKSKIMYWGSRLMKYPWNMGGTKLEVVKTYRYLGVLFTASPSWKHHIQSVKTKAAQSAVAIKKFYETTAGRSVQAP
ISAYKAKVTSQILYGAEVWGYAASNDVDIPQNKFLRALLALPPSTPASFLRLEMGMDSILTNIIIRMAGFWFKILPLLPS
RLLKLCYIEDINNPPPLQSPWLAFLSSCTFALSGMGYYLKDNERLFLPHRKGSGFPEDTRYCQAE
>RTEX-1_BF_pol#LINE/RTE-X 957-4490  [Branchiostoma floridae]
MTMSRLQMSPHSISIGFWNVHGLGKKLEVNDFRNSLEKLDFFSLLETWSNDTSEVDLQHYQHFSSLRNKQSKARRNSGGI
IFYFKNKLAKFIRRESSTSESKDILWIRVAKELFGLSRDVFIGNVYISPVNSSIHKRSEESIFDVLEQDVARFTSRGFVI
LGGDFNSRLGSLKDFADETPIDSDVEHIPILNIPRNYSDKNPPNTFGKDLTDLCYQSNLNILNGRVLGDLSGRFTCYQPN
GCSTVDYAIASSTLFHNINIFRVHPLTEFSDHCMISLNIKTLIQESQNETPKINMRPLPDRFVWGPDSSEKFINALRSQA
LSHKLENFNLSTHLNSILNADIDKEVHKFQEILEIAGKMSLQIKHNSKQKKLRTNKKWFNKNCFEARKELRNLQYLLQRN
PKNPFIRGSYFRKKKEYNKLIRKRKKDYETDCLMQLQNLQENNPTAFWNLLKQFKNANSTPKALEEIPPDSWVTHFKALH
EKRRLERQNFDTEFEMKIKDNLKALEELNTEQGPLDCQITEAEISSAITALKNKKASGEDMIINEMLKAGHSLLLKPLVA
LFNRTFFSGKFPQTWSKSYIVPIFKSGRKDDTNNYRGISISSCLGKLFTSVLNKRLSSFLEENKILKPNQAGFRKNYRTS
DNIFVLKTLISKYTQSRNQLFACFVDLSKAFDSIWHEGLLFKLISKGISGRFFDMLKSLYSQSAASVKTNIGLSENFPVK
IGVRQGCVLSPSLFNLYISDLADELNTGDFDAPLLNTSEVSSLFYADDLVLLSTSQNGLQNAIDKLGLYCNKWKLSVNIN
KTKIIVFNKKGHMFSNLKFHILNEDIEIVSSYCYLGVVLTTGCNFTTALKTLQKKALRALFSIKTTLGETNPSISVYCKL
FDACVVPILTYGAEVWGKIGLNDKSPIEQVHLKFCKSLLGVRKNSSNLATRAELGRYPLWIEVYTRLYSYYKRLVKEVPR
NSLQFEAFLVQQDLHSRNIPCWFSNVSKILEESGFAYLLINSDRNTSFAQSEVNQRLKDNFVQNFYSEMNSPGMKENQGN
KLRTYRKFKLTYEREKYLEITNFSYRRAMTKLRISDHPLQIEAGRYTRTPPDDRICMFCNKNVRCIENEMHFVLECSLYN
DMRNSLVNVKRVKEKYTNITKVDMFKYLMSSTNYDILEELCKFVYSCFKRRDEACRK
>17506559_Cel_pol#LINE/RTE-RTE gi|17506559|ref|NP_493497.1|  predicted CDS, reverse transcriptase family member (1O881); combined with gi|7332127|gb|AAF60814.1|  Hypothetical protein Y58G8A.2  [Caenorhabditis elegans]
MHSIGSDGVGIFLGSRNPNSVSGGVGFIVKSTLLPRITEVVFIDHRIGLITFKVNRKWKCTVIQVYAPTAVSTLDEISDF
YEKSKYKLIIGDFNARVGNRKGETKRYIGTHAMEPRNDTGEILATFCESNRLWHMNSQFYKPINRRWTHVSPDGMFKHEI
DHILANGKFVTDTSVLPSFTNGSDHRLLRSNIHFNINLAKLDQMKRRKPPKRVLDKATALAVSATITAPTHGDIDEDYKI
LVDSLKTAQDQSVIQPSNHSANRLSEETRLMLFKRRLMDRSDPNFKSLSIKCREAVERDHENFASARLLNAAQSRKSMKR
VARDLNEYKSFIPSLKCSSTGERITSREKMEREIEMFYTSLFRSRKTPPPPQLPTPPPIMAEPLPPFLFGEIRAAINSFP
NGKAAGSDKITADFLKSCGDNVIRLITGRFNRYLESGNIPKDWKTSKTTLIFKKGDRESLENYRPICLLPVLYKTFTKCV
LNRIRKTLEEAQPVEQAGFRRSFSTIDHIHSVQRLLEVGREYQIPLTLVFIDFQKAFDSVEPQDVWDSLQQQGVQRGYIN
LLQECYTDCSTTFTPFHKNVTVPVIRGVRQGDPISPNLFSACLEHVFRQLNWKHFKGDERYETEGIRVNGQNLTNLRFAD
DIVLVAHNPRTASQMLTELVEKCSSVGLKINTGKTKVLRNRFAYKRKVEIRCPNTTNIIIDDVNEYIYLGRQINDSNNLL
PELHRRRRAAWAAFTNIKSTTDQITCPRLRANLFDSTVLPALTYGSEAWTFTKELAERVRVTHAALERKLVGLTLTEQRE
RNIHREEVREKSKLRDPLIHIKKKKLGWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQV
IQLWSTQA
>RTE-10_BF_pol#LINE/RTE-BovB 7-3147  [Branchiostoma floridae]
MEAQHKQREMDGGLGTSRRCDPALPTTGVEGGAGVTDPRTENGVLDPNPDDGDHYGDQTERPSTDGRESTGRINLRKNIR
VATWNVRTLHQAGRLSNVLREMERCGINVLGVAETHWTGSGFFSTTDGEMVIYSGGEIHRAGVAVLLSKAVAKSMISYKA
VNERILLVRIKASPFNIYMVQVYAPTTDAPDEEVERFYEEVQQLLLECPSQDMALVLGDFNAKVGADRLEDDVCGPYGLG
TPNDRGERLVEFCQENGLFITNTAFKHHERRRYTWLSPGCRYRNQIDFILIGKRWRKCVTNSRAYPGPDCGSDHNMVGAS
LKLKIKKCGRSKRRTLLNLEALESSAVRETFNVEVQNRFEALNLLEEERTPDEFSTSFTEAIKAAAEKVLGKAPRKANHP
WISQDTLDLIDRRRKLKTQRNTESGDLLYREVDKQVQRQARADKERWLEEQCAEMEKGLGSNSSLRKSFSIIKSLRRGFQ
PKQRNIRSEDNRVLTDLQSILQRWKQYCEQLYQDNTLHSVTDDEQDTHSEETVDEHFPEILESEVEFAIKRLPKNKAAGV
DDLPGELLKTDNPTVTKALCNLCNKVLRTGEWPTDWVRSVFITIPKKPGTTDCSEHRTIALISHVSKILLRILLKRMEGV
ADREFAEEQMGFRKKVGTRDQIFNIRILMEKARESNVSLYMAFIDYKKAFDSVKHNILWRVMERMGVPKYITNSLRQLYR
RQQAAVRVEEELSDWFEVTKGVRQGCLVSPACFNFYSEAVMRESADELSWIGVNISGRLINNLRFADDIGLIATSPERLQ
ELLDLVHTVSMEYSLEISTKKTKVMAATKQPTELKIFCQGVQLEQVPTFKYLGAIIDGSAGSSREIQARLGAARTALGSL
ESIWKDRALRKSTKLRVLKALVWPVVTYGCEAWTLHAKDTQKIQAFEMKCYRKLLRVSWTEHRTNDSVLAELGITRTLLN
LVKRRKLQYFGHVTRAQNISTHILQGKINGTRSRGRPRRRWSDDIRDWTGSSLAVCTQTAKNREEWRRLVLETTIVPDPP
DEDGTR
>RTE-9_Crp_pol#LINE/RTE-BovB 445-3594 via tfasty with RTE-11_AMi_pol, 5 frameshifts and 1 stopcodon. [Crocodylidae]
INRIACWNIRTLTPGYDFDSDSDLRKMAVWSNELARFRMDIAALSGNRLSETGFIKEKDAIYWQGKPEGVRREHGVRSAA
RNELSSCEAPIAASIRWTLWVRLQKGFINLISVYAPTLQASDEEKDSFYQQLEELIGRIPWKEPILVLGDFNARVGSNAE
IWPGILGRHGIGCMNDNGQRVLELCASQGSSVTNTFFAGNIRRRTSWRHPRSKHWHQLDLVLTRCTHLKDILHTQSFQSA
DCDTDHSLVCCKVKFQAKKIHRNKPARQPCIDLCQINDPVKKRLFSEEVAKSAGMNETASDAWEVLKTSMYNAAIKSFGK
STKKNIDWFVDHSEVLLPLIERKRTALITYKSTPTTDSLNNLREARKAVQTASRRCAQEFWLGLCDSIQQAADAGDSRWL
YEGIRKAIGPTKYKTAPLKDLDGNIITDKGKQLERWIEHYGMIYSRESVVDQRVLDELPGFEVMTSLDAKPTLKELEQCI
KKIPNNKASGSDCLPAEIYKCANKDLLQRLHEVLLLCWKEETVPQDFKDAHFIQLYKNKGDRSDCNNHRGISLLNIAGKI
LSHILLPRLQTLAERIYPESQCGFCSERSTIDMVFSVRQLQEKCREKHIPLYMAFIDLTKAFDTVSWSGLYTVLKKPGCP
PILLNLVKSLHNGMKATVMYENQESDSFSISNRVKQGCVLAPTLFNIYFSFLLQHAFHDVREGVYLSTRHDGGLFNIARF
RAKMKVKEIIIRDLLFADDAALVAHSVDALQHLIAKXSDSCKIFGLAISLKKTVIMHQGSSEPVPDITLGGTRLDVVDQF
FYLGSTVTSNVDLDAELTSRIGKAARNFGLLQDRAWNNNKLSTKVKIRIYETCLSTLLYGSETWMTYAKHTKRLNSFHIT
CLRKILxIRWQDRVTNMEVLNHAGMSFMGTLIGKRRLRWLXHIKRMPDHRIPKNVLYSEAREGSRKRGRPLCRFQDACKD
DLASFGISVDDWERSAECRSGWWSQLADGARRCEVDWIKFCDDQHQRRKESAAQIQSIASAWVCPTCGQDCHSHIGLSSH
QRTHWRIHHAL
>RTE-16_BF_pol#LINE/RTE-BovB 193-3342  [Branchiostoma floridae]
MVGRFLGELQLANSTCTRTASVLDGRYTNSGGVVRWVSNPPRKNKLATNPHTWNLNRTDPNGSLTMDRMDLRAKSKQSGR
MRVATWNVLSLNREGSAELAANELARLSIAVAGLTEVRWPGSGSHTANDYNFLWSGRDDGQHRQGVALALAPTAFRALVH
WKPVNNRLLLARLRHSHGRISVIVAYAPTNVAADEEKDEFFTQLNDLMSTISRHDIVWILGDLNATTGPDRAGYESSLGP
HGSGICNNNGKRLLEFCSSFRLRTERSFYPHKSIHSMTWISNDGQTRKELDHILTRRRWHASTDCRVYRSAVLGNSDHRL
LAMTVCLRLQKNPSSKAQRKVDVSRLRSPEVETHFQLDLQNRFTALSAHTDEENPEKLWDVFKQNVTTAAVQVLGHKRRK
KKKDFLSEETLSVVEAKRAARLEGNRSECRRLNAIRNKLLRKDKQRWLDDLAEEAEMAARRGDQGSLYRTLRTLAGRTTP
PTACVKAMDGTVPDTPDQQLARWREHFENLLNRPAPPPSPQLDALAAAASEDDSVPTGPPTREEVVKAIQKLKPGRAAGA
DGITPELLLHGGPALADQLLQLFTAIWSSETIPEDWLQGVILPFWKKGSKDLCSNYRGITLLSVPGKVFANVILGRLRPL
LLRKQRKEQSGFTPGRSTVDRILTLRLLAEKRREFRRPLFAAYVDLKQAFDSVDRQALWKILKTLGVPAKLLTLLSLLYS
NTSSSVRVNGQMSDSFHINSGVRQGCVLAPSVFNTAIDFVMSRTVAQCACGASYGNVTVTDLDYADDVAILAEVMEVLQL
ALQAMDTETHPLGLQVSWGKTKVQSLSDYEPPPPGLVINSNPVEAADKFCYLGGTITSDCKSDTDIQLRIGRAAAAMASL
DRVWTSSKISVQTKIRLYNSLVLSILLYGAETWTLTAAQERRLDAFDTKCQRRILGIRWHDYVSNATLRETTSQPQLSSK
VRQARLRLFGHIARTEPPLETAALLREPTPPNWSRPRGRPRHTWQEQLKDDLRAAGLDLTTAWVLALNRPMWRSVCAGAT
LHPGACGPE
>RTE_Ele4_pol#LINE/RTE-BovB 298-3420  [Aedes aegypti]
PHQRDRPSVSWDVKQSWHDGAPARQECWRRPNKPPVKNLIANNIGDNTTRNNRQRPTRRNKDYDWKLGTWNCKSLGFAGC
DRIIYDELHPRNFDIVALQELCWTGQKVWKSGHRAATFYQSCGTTNELGTGFIVLGKMRQRVIGWQPINARMCKMRIKGR
FFNYSIINVHCPHEGRPDDEKETFYAQLEQIYDGCSPRDVKIVVGDMNAQVGREEMYRPVIGRNSLHAVSNDNGQRCVNF
AASRGMVVRSTFFPRKDIHKTTWRSPDNLTENQIDHVLIDGKFFSDITNVRTYRSANIDSDHYLVAICMRSKLSTVTNSR
RSRTPRLNIERLRDSEVAQEYAQQLEVALPTEEQLGAATLEDGWRHIRSAIGSTATAALGPAAPNQRNDWYDGECEQLKN
EKNAAWARMLQHRTRANEARYKQARNRQNSIFRRKKRHQEERDREAMEELFRAKDTRKFYEKLNRSRKGFVPQADMCRDF
DGNLLTNEREVVERWRQHYDEHLNGDVASSGGGTEITLGARADDERLPPPDLQEVETEIRRLKNNKAAGVDQLPSELLKY
GGDALARALHWVISKIWEEEVLPEEWMEGVVCPIYKKGDKLDCANYRAITILSAAYKVLSQILCRRLSPIAREFVGQYQA
GFMGERATTDQIFAIRQVLQKCREYNVPTHHLFIDFKSAYDTIDREQLWQIMHEYGFPDKLIRLIKATMERVMCVVRVSG
TLSSPFESRRGLRQGDGLSCLLFNIALEGVIRRAGIDTSGTIFRKSVQLLGFADDIDIVARNFETMADTYIRLRAEARRI
GLNINVSKTKYMIARGSREDTARPPPRVHIDGDEIEVVEEFVYLGSLVTADNDTSREIQRRIVAGNRAYFGLRRTLRSSK
VRHRTKLTIYKTLIRPVLLYGHETWTLRAEDQRALGVFERKVLRTIYGGVQMEDGTWRRRMNHELHQLLGEPTIVHLAKI
GRLRWAGHVTRMSDTNPVKMVLENNPTGTRRRGAQRARWVDQVEDDLRTLRRMRGWQRAAMDRVEWRRLLRTAEATQALA
>RTE-18_BF_pol#LINE/RTE-BovB 1-2433 fragment [Branchiostoma floridae]
LTQTMQRVHKKDITILQGDFNAKIGTDAHKDWSGTVGKHGLGTTNDSGLRLLEFARYHSLAIANTFPRHKTSRKATWHSP
DGKTHNMIDFILIGKRHLSSLNLAQTRTFLAAFQEEIGSRFAPLLADNNADDKLATEAETNLKAAAENLLGKARRAKHPW
ISAEVLQKCDDRREKKKVRFKTRQKNSEYQKANLEVKRAIREAKEEWIRQECSKIEEGIQNNNTKQAYQTLKTLTQKTVN
RNTCIEDDEGNLLTTKPDITRRWKEYCYELYNYQLTAEQDVLEELKAYTCQLQEDDDPDILEAEVLSAIKTLKLGKSPGI
DNIPAELLKAGGDPVVKMYTRICNYVYKTGNWPEAWTTSIVIPLPKKGNLKNCQNYRTISLISHPSKILLKVILKRLQPQ
AEQILAEEQAGFRKGRSCAEQIFNLRMICEKYRELGKPVYHTFVDYKKCFDRIWQNGLWAVMRRFNISRGIINSIEALYK
ASQSTVMIGNEFSECFPTSVGVRQGCLLSPTLCNIFLENIMREALPPLESPVKLAGCIINHLQFADDVDLIDGSKQDQQT
HFSCLDSTSRRYGMEVSLEKTKCLVTGPSDTVQVTVRGTDLEQQVSEFTYLGSLQTEDCSSVREIKVRIAKATSVLSRLK
HIWNSHNISPPTKIQLLRSLVLSIFLYGAESWTLNAEIVKRINAFEMNCYRRLLRVHWSTHTSNREVMQRVKSLVGPRPS
FLSLVKKKKLQWFGHATRAKGTLTHTILQGRAEGARPRGRPRRTWTSDLKEWSGQTVHHLATLAEDRQRWKTYVDGCAAP
TAGEAMGPVR
>RTEX-1_NV_pol#LINE/RTE-X 1981-5457 [Nematostella vectensis]
MPGSLTSRNWDFGRSLRIGTWNIHGHKSKELGNKTKLAEVVDIIQQHDIFGIVETHASQNTDLAVEKFKHFIKTRPKSGK
KISGGIALYISNKVAEGVAYLPSENRNIIWCKLKRNYFGTEKDIFLGTVYFSPQNYEQTNDEDYMSDLEEDIIKYLGQGD
VILQGDFNARTSELTEHINFDEDRFLSLPDDYELDVPSPRYSEDHYTDSRGRSLIELCSESNLRIANGRIIGDLTGKKTC
YQYNGTSLVDYVISSNRVRQKFQFLKIHPLLPHISDHCHITYNIKIGNKITVTQSKSFAKHARIFCHGTNVKENVDSILR
SDIYRSKLDNLVSHCDTNCPDTASNITSSFTKLLVEISEKAGFKYGDKQKCQKTNAPWFDEECRSEKANLKRCGRKICNS
PNDSELRRELFWKKKKFKKLCKRKKYQYRASGIKNLDFKDSKKLWRSLKNLFSVGKDKKQQECDLEIESLHSHFMDLNKT
TTTNLSIPKCRDQTGPLDSEIRLEEVKLAIENLKNNKAPGHDNILNELLKYGKDTLLPYLTRLFNIIFRSGVFPQEWNLG
FIIPIFKKGDRSDVNNYRGITLLSCLSKLFTSILNSRLYDYLVQKGYLKKEQGGFRKKHSTVDSIFILKTVIDRVVKSKP
KKKNNMLFTCFIDFRKAFDSIPRDKLFAKIQQAGISGNFYEVLRSMYSNDISCGKIGDSISESFRCMVGVKQGCMLSPTL
FNLFLSDLPDTLAKSSSAHILGNTKLNCLLYADDLVLFSETSSGLQDLLNRLSIYSEENSLKVNTSKTKVMIFNNIGKVM
NNYQFLLNREQLENVKSYKYLGLVFSAVGNFNLAKEELKKTALKALFKLRKDLGIHFRSDINLTLKLFDALIKPILLYGS
EVWGADNKSCVDDRDPLESVHLKFCKMLLGTGKTAVNNACRGELGRYPLCINATYRNIKYWTNLRSKEEALSKVVYTECV
NNPHVSYWTHKTKEIIFKAGFGFMWLYQNETDPTLFLDIFSKRLNDMYFQKWHGEIFNDQRKNSNEMNKLRTYRTFKDKY
ELENYLVAIPNVKHRVALTKLRISNHQLQIEKGRHTRPYTKEKDRICPTCKNDVENEFHFLVQCQTYKELRNSVIQNLQR
NQITQKRLFNLLINPPTQLAGIAARYISECFKLRETLI
>Tad1-2_TMe_gag#LINE/Tad1 1433-2527 (fragment) [Tuber melanosporum]
VPAPQAGTSTKANETAPQKTALKQTWAAITSSGIDVDGFRLVPTKKKRQEPAPGIRETAPSAPSTPHARQRRLLIRSVER
GRRIGAAGLSPARIRDAVNSASRVKFAYAEFNRNDDLVLTTMGDLPAEPALNDVPAITKALNEIDVFGFNVTTDTPSVNI
VINSIPLGDEDWTPEEWDADSDRWEDLAKEISEYNPQVRLLDRPKWLRSPTALKAEGKVKSSAIVAVEANDWIMAETRKP
LPSMAIFGMRCTFRKYVKKDSSTCCARCLQFGHHAVHCRMEAICKYCGGRHHTKDHLCAQTYCTAGKGKMCSHTLRRCVN
CEETSHFAGDNHCPTRTRAKSPAQPPTAADKGKAPAVLAPPPTPK
>I-1_AO_pol#LINE/Tad1 582-4100 via tfasty with I-4_AO_pol, 3 stopcodons. N terminus from gi|83775366|dbj|BAE65488.1|  [Aspergillus oryzae]
MASGQRSTDPNDRTTETFHGLGGYKRGWGGRASPFPHARPDERVPLATRHSETTTAGEATTTNDDTDDTSQDRQIRTDQK
APQLLEFADSRLLDLWLELGTITQDRNNHRSTIDLVFGAQSLADQHIACEVAPKVHADSNHLLIRMILYLAPHAYQPPKR
RQxKTIEAAKLRKFMASNLNIYSHWDVLKMNLSAASIDAAVDFLMEVVQRAIQHAVPWARPSEWAKPDFTPECKRAVKIT
RKLRRIYMRHRLPSDWTAYVKARNRKGRIINRSLRRGFRRWVSEAIDQGTHGIWRVAKWARNRGGRAANMIPTLNGPHGP
ADTTEAKAEVLRESFFPEPPPADLSDIARRTQPPQIEFPEVTKEEVAKAIRRAPPDKAPGPDAVPNKIWHELCKVPVFPE
RATALFNASNKTGHNPRHFQTSTTVALRKGGPRDYRKPKSYRPVALLNTFGKILESIIATRIAWALEEHKLLPQTHLGGR
KGISTDHVIQLILDNIYRAWGQGKKVSMILLDVSGAFDNVSHARLLFNLRQLKLGHFADWLQSFLTGRTTRISLAGELSA
EFPTPTGIPQGSPLSPILYLIYNTPLIQDLHVRRPQGGSTTAFGWIDDACTLAVSDTFAENVETLNAALSRAGxWASRHA
SKFAPDKFELIHFTNPRETETPPQSPGLPPDHPDQIWEVPLPPAGHDQMEIIFTDTIIKPTETAKYLGVWLDKTLSFSIH
RTKALAKAHGTLAALKGIAGSTWGAPLRAMRRIYQAVIVPQLFYAAAAWYSPKGGQIVASINQKMLAEFTQIQKQAALLI
SGAFRGTSAAALNVELYILPVHLQLQQIIEETAVRIRTGPELACPESVLRPRTVQERRRSGWTPMEALSRKGGPLWPLGK
KEWETRKPYILAPWEPPVTTVIDSHEAALIYHRHYCARREGIAVYTDGSGLNGRVGASTVCLSQGWKRNCTLGTEEESTV
YAGELTGIRMALHRLRRETRPATVFVDSQAAIQAIQNPRRPSGQYILDQIYYIIRRYNMQNRVQIHWIPAHIGVPGNEAA
DEAAREGATREGTQQTGEAICLAAAAKRQIRRSIKDRWIREWKTEKTGPTTYRLVEVPNKKILDLYKNLSKSYASIIIQM
RTQRNGLRHFLHKIKAVDSDQYLYALGSQTARHILLQCPLYAELRGRMIGKLDPGVQKRLDYNGIMSHPQAIRYVAEFMH
QTELLSQFRDVEQTGHYxRRTDIEDDEYIVTPGGGRSAPSIHISVFTYQEH
>Tad1-4_BG_pol#LINE/Tad1 1785-5600  [Blumeria graminis]
MTPLRRRKQNNCPLKIVSANVGRGAQAHELALNEASLASADIVLIQEPYIYSDRARRITKRHPSFETFSPIDDWTSSRPR
VMSYVRENACLCSEQGYTASSSDMLLLRIISSSGKSISIINVYNAPAGPTSNSVLDSLYSLTLPFEGNLLISGDFNLHHT
RWQPSWTRSPSPGAEKFTEWADKNSLSLLSPADMATHDRGNVLDLVLGSSPLVQKTKCTLAPHLDTTSDHATILTFVDWE
GYTEPIRRLRFDTLDKDLFLRLLSTNIDGISPIPLASTREALDRCAIELTEAIRTAYTGAARRSLGHGKGNPWWDISCKQ
ARQRYKKVRSGPITEEDVARERKEYRDTIARAKKAYFTNKIAAASTGKDIFALTKWHKSTGNFRSTPLKDPRSPDRPPAT
SLPEKREILLGNLLTNLAEVGDIPLDTPTVAKRSISFPPLCQDEVQDSILRAGNTAPGVDEIPTAILRIAWPLIGEHIFS
LFKSCLTLGHHPVCFRQAVLIMLQKPNKADLSSPRSYRPIALLSALGKGLERLIARRIAWIATRNTILTTQQFGALPGRS
AVDLTTCLTHDVERALSEGRTASMLTLDVKGAFDAVLPGRLVRRMREQGWPEFLVKWVASFATNRSVQIRLDGELGPLQS
INCGLPQGSPASPILFMLYISPLFKLGNVSRRFGYADDVAILETQKSLHDNCISLKMALKEVLEWGIKEGITFDPAKAEL
QHFSRKRADKNPGNTPSVKHGNFSVSEKTNRPYTRWLGVYFDKTLSFKWHVRILANKALVVANALRSLGNTLSGAPPKLL
RQAVTACVLPIAYYGAETWWPGLTRAISPTRTVSNLVKGHLSLLQKVVRTSARAILPVYRTTPASALYREAGISPPEIAL
DSKLRQASLRIHRLDPRHPLRRRNIWILSQQRRVSRLSRWALSFPPTEYLDPLVNPPWLAKESWFSRTRRVTAASHQLPE
GIPSQDLVIYSDGSRLESASGPRVGGGFVIFQAGHMICQKRIPLSPSLEIFDAEAAAALSAVETAIDLTSTRFANNLWVL
LDNLDVARQLLSTPICSSQDVFNKFAFKAQEWPGRTRLPHTIPGEVRVHWIPSHSGLLGNVLADKAAKDALAMPYPSPSP
LTIASAKAWVKDISIKAHKEYWAKHAPQSYQDLEIGYPVGCPAELSLPRHHTAHIYAARSGHGDFAAYHNRFNHNPAHNT
CSCNKLKSPAHFLNCRLITSSPLKPPRGCSDKWKFFLGTPTGASKLAQWLEKSQFFTKICPRILPDTSINDA
>Tad1-5B_TMe_pol#LINE/Tad1 2832-6623 via tfasty with 70989994_Afu_pol, 1 stopcodon. [Tuber melanosporum]
MLITTMALNVGRSSRNRALAFDLFSFVDLFFIIEPPVDLEGLHVPIDVDGWDLFSFVKKSGVEVFVRSHICGMFEMVGHG
ESSASVGYWEKRVKKVLTGVYFRPGYTKDQFVGWLDELGEPDIVFGDFNARHQDWDPNADHNNTGGRWLKQWFTAPIRDM
NMVPPTVPTFRDVSRIDLCLHRAPYIRHRYLDAAGCEHSAQALKLAIDLPDNIMRRRPAWKKVVWEKVGKQLDALQEMED
GKLWEGVRRVVDALPRASVGRGQCEWWTPELDRMRLDVARLRRYSKRKAERTEDYKLARCVYRACLLRARFEHIREKIAE
SQDPDIFRLARKLEAKRTLPSMARTDGSYATTHSDISDLIAQQLSPVDPTPWEDFEIDMDSAQEMEVALTRSPTNTGPGE
DDIGYPFLRFWKRRDTTTLRRLVDYGLRHDIPDWHKAEVVLIPKLDKPRYDVVKSWRMIHLLPTPAKVAERVVLLRLAAC
LDLGETQFGSRRKRGVHDAVAVVFEFLRHNEGYKRLILSMDVEGGFDNIDIDLLSDFLVARGCPVYLCQWIRRWASCRSV
RFRFNGCVSRPYHVSKGVPQGSPLSPFLFGGYVADIFRPRMRYSPGVRQLVVSYVDDGVIMVAAESSKAARYHAGEIFAD
CDRIARARGMGFSALKTQWIGFGDKAWEGMELLGEMVLPSEDLRVLGYRFNVFLNFSSHVKYWLERGLGVRRRISALGRR
FGSVGGLGAWETYRLVQAAYLPTVYYGLEFVTDHASYVKQIQVHVNDCLQSVFRTPMRLANNILLAEFGTPPVAVQGRYL
QxRCYSRFINYWYCDQHPWYGEIRLQWKEEGMVAHRQTSDKELTCRPTVSIGKGKAVMAARHRVLYSALCTSSDVVIYTD
GSKCSEGAGVAWAVFERGALTRVDGCSVPPSWSIVECELFAVVCALRHAQDMAKRRPVHMFLDCVPALIMVDNMFSDGDS
AELWEVMVPLLNAFSRVSFGWVPGHMGIDGNEMVDVKAKACVRRPLRPLLWEGVSFGIGHAALARELRKEEWGTWHVREG
HEYYAREPKAPRHLRGLTRMDSYVLLRIRSGTGMVGHDSCEGKEGRHHWTECPRYARGRPANEDLYKDSAVLRWKRWWMD
HRWLGLGIPRHVGLVDGELVVAGNPFDGTLMVERNGGTVLIGDPTTCTRCEKRHDGSGCVLPGEVTLPKKWFFLPDQRRC
ECPCCGTAISATATKKRATFAEHFERRPRYLRICHDRFWHSQHLQWDELNLATRTSVVLRWAKV
>Tad1-5_TMe_gag#LINE/Tad1 21-2549  [Tuber melanosporum]
MTEDVLPTSEVLARDTPMELDEGRNSEATGLGDSVHAPSPAMESSPPPVTGRWMSPPGSQLEGPLETPSGDSTPLEVQLP
ETQFEDADMVVAQADSIMAGVCEMLDAGRTPSPGPRSGSIIGSMLEGLEDIRSGNTQPLLSSESGSIEDDTIQDVRTWMN
SGPTFDDDGPRNGINYWSRVHVLERAVKALTDIVGRQGEEIEALQVKSSPRRRTPPAIPRSTSVVSSEPTTPSPTPGRKE
AYTEAPAAKASFTEVVKRMAYVPKPPAGPQERVRPARPTSAASSHQSSSSGSSSSEGGVVLRVARGGEGKTVHWEEEEEE
EEDKKKERRKRGRRLSGAARRRRKAARESGDEREAATPAKTQGKADKQESGPKATTPVATTAQSGPAALAGVKIGTAQAR
PEYRRVPMGPPDPLNSVPPPPRSSPTPNARGRHITMRFATRKKVALPEGVDIETIRNRINVTFSNQGKIRGNAPYIRAGH
VRPEIGCIFLTLAAHSVTELGNRLDKARLDLLRELSLPEFEFQRNLEKVKIFVSGVPLADTGRGSIWRVEGWTGSAAFDG
LRTDLEQSNTGVVTVSRPDIMGSIHAMRQANATSCGIRFVVENNEAIKERLAEGKIWLRGGARNIRVFEEHRPLKVCGRC
LETGHFEATCGRPPRCRFCFGEHFSREHMCSKLACPGGVGQACGHTRRQCWLCDRMDHFTGYERCPGIKSSSPTPPXSPV
GQGTTTPAGPAREAGKTPEQQGXRTERNRKRKSRSRGRSPTPRLVEISSDEEEETPRRKSEKAKGKEPERPSPSPVRGIL
KTRAGTATKPRDEETSWVARDPDTGSTYASGPCGPSGSVEAPF
>70990008_Afu_pol#LINE/Tad1 gi|70990008|ref|XP_749853.1| reverse transcriptase AA 360-end  [Aspergillus fumigatus Af293]
MKSGPGMEALINDHQSQDLDVLLIQELSITSYQTHVNHSAWRLYRPTVASDEIRPRSLIYVNRKLSTSSHRQIRCDHPDI
TAIKIWTPDTQILLFSVYIPCVPLHAPDEATAEPTLTAIQNTISAARYIDQKPTTIILSGDFNRHHLMWGGNHIQARFIE
DASELIAFFQDHNLHSCLPRGTATFWPLNNPGKSTTIDQTVSDRPDLLIRCHLYHDNYGSDHRATYSEWSLKARHGPIAK
ARKAYERADWDKIGAEVLLQMGPWKEIKTRPALDETVERLTEITASAVENHIPNRRPTPYSKRWFTPDLKVQQTEVNRLR
RKWQESLTLFEEMQQKRRIWTHTIEKAKKSHWKQFLDGAREGMLWKAATYMKPRETWGSVPSLQVGCNELVDNKDKARAF
LDTFFPKMDEPNDDPPTQAPLELPWPPITELEIERALKAAKSSTAPGEDGLPTLVWKHLWKFLNRFIAGIFTASVKLAYH
PKQWRRAKIVVLRKPGKPDYSNPGAYRPISLLNTLGKLLEAVVARRLSYLAEKHSLLPDTQFGGRPGRTTEQALLVLSSA
IDRAWYKCRVVTLIAFDLKGAFNGVNKISLDARLRVKGIPTVARKWIASFMSDRFANIGFDNFRTKIAPLDNAGLAQGSP
LSPILFTFFNSELVDQAVTPHGGASAFINDYFRWRVGPSAEDNLAKIQSEDIPRIKAWARRTGSHFAAEKTELIHLTRKR
SQHLQGQVVMNGETIKPSPTAKLLGVVFDQELRWKEHVQQAIKHATKVSIALAGLRHLRPEPMRQIYQACVTPVVDYSST
VWHDPLRDKTHLRHLNSVQRVSLIRILAAFRTVATTSLEVEAHVLPTHLRLRYRAQKVIAKLHTLPHSHPIRSALSRAQK
RRNNIGTSSRFPLAEALKTMNLERLDELETIDPSPLPPWRTEPLTEVEIGSDWETAVERAEATRSTSDIVVYSDASGREG
HLGAAIRSHKIATILCDSKSALQATQNVRNNSGQRIVHAIHQAATEIQPKTLHAGAKPIPSARCSPGRVSASAVISSING
NRSGSHPTKAVTYGKSTAPYQQPTRGGYMVACPGTRRTC
>RTEX-3_NV_pol#LINE/RTE-X 1784-5326 [Nematostella vectensis]
IYLTFTISSPEYSQLRIGCWNINGFSSKTFGNKLNQNDCLDTINKHEIFGIVETHANTNTNLKVTNFKHYVKHREGSNNS
RSYGGIVIYIKNNINNGVVYMPSINKNVLWIKLKKTYFHLKKDIYIGTVYLSPQRENNNELLDDLEKEILNFSTKGDVIV
QGDFNARTGALQEYVLNDDNSKKFFELPEDYETDTTNRRNSQDVNTTDSRGKNLIELCTAFNLRILNGRSVGDLEGRKTC
FKYNGSSVVDYVIASNNIMNSINYFIVKPLEPHLTDHCSLSYALSVRSPSKGAEAERTDQNEGLTEFKRLIWKDGIQEKL
KEILVSNDMQQKLSDALKNNSTETMTAQFTQALKEACEAAGMKYQNTKTVNNQNNKPWFDEECKTEKENIRSLGYRISKE
PNNHSLRDALNRKRRIFKKTCKRKKENHYANIINNIDFRNSKSLWRQLKNCFHIGKSTKASPIETENAGKFFQHFKNLNA
TNEAQPKQNGRIDHGNYREGPLDYRISEEEIIKAIEKLKSGKAPGADNILNEFLKCSKTILKSYLGNLFNKILNSGVYPT
MWSYGLIVPIHKKEDPSKPENYRGVTLLSTLGKVFMSIMNKRLYNHLTEKGILKTEQCGFRKEQGTIDSIFALKSLIDKH
VKAKPQKTNNFLFACYVDFSKAFDCVPRAKLFEKLKAVGVTGRFLDIIQSMYSNDKSSVKIGSSITESFRCYAGVKQGCM
ISPTLFNFYLSDLPEKLNEKYRNDIDLNGVPLSCILYADDLVILSKSAKGLQEYLNSLEEYCKASELSINLDKTKVMIFN
NTGKTMNNYRIFYGTYKIENVKSYKYLGLHFCPYGNFNLAKEELKKVALKAMFKLRKEMGEHFRQDIKLTLRLFDTLIQP
ILLYGSEIWGADYKGKLEKDPIEMVHTKFLKWLLGVNRYCSSNACRAELGRFPLRTKAKCRAIKLWLKLSNNNGNNEKLS
RKAFATISNYENKNFWHRKIKQILDLAGRSDIWLTDTNTPEATYSFLQQRLYDIEQQTWLSSIQNDNRKDQAQKNKLRTL
RKFKLSHNLEDYLTDVKNIDHRIALTKFRLSNHKLAIETGRYEKPYKKPNERKCLVCQTGKVEDEEHFLLECPAYKDDRD
NLLDFLKTHAGINVRHHANKENNFVRIMGLSRNENVNRRLAKHIFECMKARNVKLDDNVR
>RTEX-1_VC_gag#LINE/RTE-X 3-1028  [Volvox carteri]
LACSAEAMRDASIRDEPKCPTLRMKKKGNKRTNSPRSEDCSIAKAQKSEIRTAARQGLGSAATEAMGDSPVTLESLMTFI
KSEFERFNQNWQQQLPVKVEQLKGELKKELKEEIMGELQVDQTEKLFRPGRLLVRTKPSLVEQLPQKLRQSLRARNQYAE
IGVDISPRLDTRAAAPTLKLTEVGRFKGMAMVDVIFHADSRGFVIQALLHLRRQLGANANNFIIQDSLTKRGLELKTQRT
ATFIWLRDTEKRDVRWVHGVDIAVKNNGTWQPYTGPWQPSHAPNGNGSATGANTTSIGGGTGASGSGGSGRAWRGSDRGR
EQGGPPGGAPPSPGGTTMDTA
>RTEX-4_NV_gag#LINE/RTE-X 178-1458 [Nematostella vectensis]
MVQNILSKLERIEEAIVKADSTTAETNFEVAKIKEKLANEEATINNSIGNMIKNNMMVFKREQEQFLLQEEQRMSKALNE
VGKLQGRVGSLVEEKTNLTKRIKSLETSKAELENRLSVLEKEHETVQNQRQQPIQRAAPKQEQHQQNPNASTLVQQQQEP
KEYDFVFMCDSNRRYINRDELCQVHGTNKHTCSIIPCNTTERAIEILKNPTFRVRHGVIINTGVNDVESQPANIVAKKQQ
QMVHTAMSAFPGKSIIMCSITPRRDSLDEAVFYINAEVGENLSAEKQVILVDNGNLRKERFYRDVKHLNKEQGIRVLAGN
IKNGIRRALGITKDRYQSKQLSSHANRAATQAGRSPPSKQAQRSSDPRLHSRKQPDIPIKNQLSNITRLLEQLLNPDHKV
CFQQMPPGVSYYPIDLPTEEPRVGVF
>RTEX-14_BF_orf1#LINE/RTE-X 1-2415  [Branchiostoma floridae]
MGAESKTPKGKTPTTKPWNINLSKVPLDETLAFDYEDVEKSRLCGVKLRTSQLDKWIQLHKDNFDKNFEDHKGTTVTWKS
TQGTTSLSVNFSSATKTGKSLLSVHFYHKKNGLMVQGQRTKWWVDLLYPELKNNVTMLDKCTRASAKDGVQRVRDAVNSF
QTISTEQPLPKTPCPSNVTETPTMPKSTAPRTLEGLETPTGSSFTEQLQQDFVNGAQSAGDAITGDSRDPPVTSGVTSET
NESSDTRNVTLTGTSNSPVEVYLERVISVEKSIKASDSAFNDLQKQYVDTIGKLNAFRDELIAKEKEREKAHMKSLNAIS
TQIEAAQKALESHIRKATAKLQTDLNNSRKDITLQKEKLMKEKSEAKQEISIERNLWKERLHSMSLKVDDLAASNADLQD
IITKQDSEIQVLVDRYKDLEQMFATCHCGVTHSLHDNKAPSSQNNDRSTSHDNGFTPVNRKHNKQTIVPDDQTPAVCTNM
PQSVNNHVRSENAGVEIRIFSDSLFRDVDPDRAFKANHTKIHRSSTISAAVDNISNIKDSTTKTVILHVGSNDLDNSKGH
SDSVHKTLRNTDRLLEATKKSFPNARVAVSQVLQRGPNQRSTLNENIKSYNQEVLKLSRNSGFTYIKHRKLTQDRHLYLP
DQIHLDPRSGTKLLVADVKRTLNASPPTPTAGPPQLPTPRPQRGYRSSDQHAHPRPQTAATKRDNAIPTRDWFKNSVNAI
PLGSRKPVSPASLTSNRNPTTGSRPGGTQQVVTSPITTGSRSNGTLQVPTSPIATLQLRPTKQTVLQWKQIGKRFRKAWD
ILTS
>RTEX-11_BF_pol#LINE/RTE-X 2564-6298  [Branchiostoma floridae]
MPSKFLTVMGKKSALILSTWNIQGGCAKKFCDVDFCSFFSNSDLICIQETWADNFVDFDFPGFSLFSSCRSRKKKAKRNS
GGVATLFKSSFKKGIHKLDSSSPDTIWCKLDKHFFGLTNDIYLCNVYIPPETFPKSSEIDPFDTLSSDICKFSNLGDVVI
VGDLNARTGSITETYFDTDSSDMVTADVMDVKNRNNRDVKVNNYGRCLLDLCSSADLTILNGRFAGDLKGDFTCHHYNGS
SVVDYCITQRSMLSDIQYVHVSPLSPFSDHCHVSFSLSTKHAPLISEEKCPSKLNPIRFIWDENSNDLFSAALNSSETSS
KLNDFCQETFHSAENAVSRFTEILLDASVRSLKIRRRKQVKKTQIKKNKAWFDQCCWSLRQQLKKLSLQIKKEPWAHEIR
IKYFSTLKDYKKLIKQCKRRYKAEILTKLENMSEKNPKEFWSLLNFLDNEVNGKTQKNTTDPNITSTEWTDHFKGLNNLI
KNKNFDTGFEKTIAERIKHLDKNPSNLLDYPFTMEEVLDGVKQLKSGKACGIDSISNDMLKQGSKQLCQSLITLFNTILS
EGSFPSNWNTSILTPIFKSGDKSNVDNYRGIALSSCLSKLFTRLLNTRLQNFVEDNNLLADTQFGFRKKCRTSDNVFILK
SLIEKYTQKKKGKLFVCFVDMKKAFDSVWRDGLFYKLLHYGIDGNFFNVLKSMYMNVNYAVRIENGLSDSFVSTCGVRQG
CNLSPLLFNLFINDLPQCFDRDQCDAATLTSRSINCLSWADDLALISLSKQGLQQCINTLQTYCDNWKLTVNVSKTKVLI
FSKGNTKKISKEFFIYDSEIEVTDSYTYLGIPFTSSGKFKTARKFLKTKAMRAIFKLKSLLSSENISIALGKDLFDKFVK
PILMYGSELTCFDHTSKTLKLIVSKNIPISSPKNTLSFLLKKLQIDDNIPLSIRKSTCTDATHSYIINFERRPDKDMFLR
HASGLDIEKDGFSTDNTRLPLDIPEFDILDTRFQKFLLGVHSKSSNDGVRGELGTFPIIIPARIQLIKYWHRLVNLPEDS
LLRDAYNTVLTDNQDWINHVKDILCYHGFGHIWMKPEAYKTDYIANQLRLRLQDTYIQEWFSSIENNSKLSFLSKSKECY
EQETYLYDINNFEIRKSITQLRISSHKLNIETGRYHNVAPDQRFCPFCPKQIENEFHFVMECPMYDMLRNKLFTFLCLNT
TDFKILDTRSRFDYIFRSDSPHNAKIGKYIKDCFVIRKDSDTHV
>Copia-3_CPu#LTR/Copia 60-4669 via tfasty with PCretro3, 61.1% SW:1793, 1 frameshift and 5 stopcodons. [Coniophora puteana]
MSSTLSHSNSSDNDERGPSPSTTPKKTTALTGPKKAMIATASTSRAAAPTARNAKPATTDKGKQPAHPTMSTRRNPAPQI
TLQIAEPMDDDAATPQPPVRPPLDHSGKVQVAVPLKKSDPYEVMVACLQSQYQKVTAMSGTDKLRKTKENGNNWWSWKQR
ATSMFEVTGCLKIANGDWPVTLCQTEKDQILWEMRDSAARFIINNFISDELLPYVRDRDPVNPDRILTAHEIYDRLKANF
EVQSGQQAITIYRKMVNMKAKNSTNMQTHIGKLKDLRARFAAASGNKQHVDELNFQNIILASLPESWDGWASGFIGVQDA
SGGIMSRSTEDLVAAVWKEWIRRKKNVDPDNSDSDSPRPAKKARKGRSGGGDQKGKYCHTCKTTSHWYASCTAKNVNLCE
YCEKPHKGDCYAKIRYPDWWKGKKVSLKGKEKADSGGDRGTKRKRGEASTSEDTKMAEELVVNTTSTPTSDEDVNMGESS
QYTGCFYCWVSDSGTTSHICAEKRAFINYKPVQGMKVNGISGPVIQVPGKGTVCLKSHMDGHATKIILHDVLHMPSASKN
LISVSKLDEAGGRAIYGNGKVWLLSPAGNTLAVGTLRNRLYYFDCEPITKECAYISDEPCARTWAEWHKHFGHISVPALK
ILSNKGLVEGLKISPSPEHFDCDTCMEAKMTHTSFPKQAKNRSTTPGDQIFTDLWGPARVASIHGHKYLMSIIDDCTRRA
EVFPLKNKSDAPQILKTHILNIERQWDFKVKRIRSDNGxEYINNPLQKWCADCGILLEITAPYAHAQNGVAKRFNRTITD
MMRAMIMGQSLPQFLWSQAAIHAAYIxNRSFSHALPGITPTERxSGDKPNISHFAEFGTPVHVLDESPGLSKLQPRAKKQ
LFMGFHEGPKAIRFYEAHSRAIRISRNFKFPSLENASADARREGDYTPTEPINTPSHSKKRTLDPDIEIQEPRRSKHPKI
THDYNKMHEGEPIPELVEFTEEEPDDGQLLIEEYIYLAFNEANMASDDPKTLEEAKSSPEWPHWENTIKAELGQHVEYGT
WEKKPCPTDRKAIGNKWVFVRKYGKEGELQKYKARLVAKGFSQIPGLDYTSTFSPVVRLETLRIILAVAVAEDWEIQQMD
VKGAYLYGKLKEDVYMKQPHGFEDGTKRVCKLIRTLYGLKQSGREWNIELNQKLTEKGFTRLTSDSCVYIRKTPNSCEII
TVRVDDLLLFAKTKDRMNELKEELKTLFELTDLGEPSKIVGIEITRDRSKGTLKITQTKYIESVLQKWGLKNADKVATPM
DVKTNLSPKDPPGEANxSNNYASLIGSLMYAACATRPDIAFAVNRLGAFTADPDLTHWTAAKRVIRYLSGTKDLGIIYRR
KAKLSLKGYTDADRIxCRTYMIRPDVFSNSDFANQSDRISVSGYVFMLTGAAVTWRSKKQVTVSLSMTEAEYITMSFTAR
EAMWIRNLLNEMDYKQKKAATIYGDNKSALLLSENPEFHERTKHFQIRHHYIRERVKNGDIKTKYCPTNKMMADILTKPL
PKPRHNKHVEGFRMGSD
>Copia-3_BG#LTR/Copia 72-4514 via tfasty with Retrofit4, 59.2% SW:1018, 1 stopcodon. [Blumeria graminis]
MKMTDPKEILGNGISFIAWRMALRAKLGRKNVLGHVFHDMPGIRPVNIPTDPLLGSPNAEDADKLTEKYLDEFERWTLGE
IEAKNIIIQRLSTTICPQHYDNLTAKELYDTVAGTRNETATAPYAAALETLLSIRFVSTADDYVDRFLAAYQSVNNAADA
ISTRPLASGYRIGDGQASAIFVMGTKRIEWLNVWRDTRAFDSDNKYALLRTLMSSLRSVAGNRTQTPNTVAAVVPNSINV
DPEAYCKRCKNRHKNKYCYRLHPELAQGSNNRSGVNRGNGKQASVNSVGDDSESDSGGVIIAASSRMNESVTLYDTGASH
HFVPHRSMFSEVNRSPKPFKFDQAVGTRELCQQGTATLKIGTFSLQLHETFLSPESSCNIVSAGRLERLSNIVPDPEKSL
LVQKRDNESSVPIARLVRKNDVYYIYPLEKTDTSRSYIAAPGVVRIPQITSAQRWHQRLGHTGQKILKKTAQHTKGLEYI
DLSQLTTCETCHLSKAQRFVSREPRPIPYAPLDEIFIDTVGKITTAINGLQYVVIITDSKTRMRWSLLTQSKDQIASSLV
QWIEFQHHHHGKKVRAIFRDGGTEFLRIKSHCEQHGIRTDVSAPDTPEQNGVSEAANKVVLRLARSMLIDARMPALYWPW
AVRHACYIVNRLYCLRTKQIPLLDFMQGLHQPHTGQVDLTNLPRFGCRAYKLIQPKPGKFEPRAAKGWFMGFQENTDKNF
IIYYPHWTTSQGWKWIENFTPHASFNEDIMFGDELSPINQQKTTNYWASDNSLFTETMNYQHNPPLTLELQTPALFEGES
SSPTTLESDSITQDATEDSALADNINNRPKSIVQEVTSLSSSEEQLPPTDIRNVSSQSSEQGSLSESYHSKDIADSPPES
SFPSHSQELSLQPEDEGESSSEEEADETPYDKIMTGWDPIRSIVGQNRAHSPEREYSPENETTRTRYGREVKKHDYKRLH
YGKAAQISNDPKTWSEAMTSPEAVQWKKATDEEFRSLKEKGAIKIIRRTELPQGRKPMKCKWVFKKKFRADGSIERWKAR
CTAKAFTQRQGIDYHETFAPTPRPETGRIMLVLAHQFGWHRRQGDVPTAFLNPDIDIDLYMEMPQGYEKEGCIILLRKGL
YGLKQAAALWYDDAKATLARLGFHPTTSDVCLYTNAHQYVFVVMHVDDFQVMGPNLGKIETLMQALHKRYKIKSVSTDLF
LGIHISYPRKDTLALSQGQYTRTLIDRHGLKDCKPASTPLEHLMLPSDKESTPEEITRYNSIIGGLQFLANSTRPDIAFS
VNHLARFLTNPSGEHLHAAHRVLRYLSKEPDRGITFNRSIGKPSLKAYTDADFAADPSTSRSTSGSLIKLTSGPISWRSH
LQQEVVLSTTEAEYLAATETCRQLQWTKLLLEELNITDHIEGAKCTKLYVDNQSAISLIKNHDNHRRSKHISLRNFYCRE
QHQKGLIDVSYVPSSDQLADSLTKVKSSVAIQxLKESLPTG
>Copia-3_PSt#LTR/Copia 407-5491 58.6% sim to Copia-22_MLP, SW:1893, [Puccinia striiformis]
MSSSPPPGNTSANLPSSPNDYTLHDITGIGLIDRRSGAERVAAIFNHHLGEGWDQQLSIHRSPRQRAYSETDTTVTSYRI
PGSFIPPRPSTPFQRRQAIPDFTPPTQSTSRLPDHPTQSTPFRFHSPPRPNPTPFPRNRQPLPTDLSLIISPSFSFRPPN
IPSPPPPPPPPPDYRQPSTSSSPPPSPTPSSTTSDRMPDRGIPPHQARADLEAVKAQLEETKIVNQAIKAGSESFSSANR
RLAADGSNFEAWAANIEDAGKNHIGEDNFFTTATTNRILEKIGRGIFLASVDESLRSDVQLAKTCVEMHELVTKKFKTIS
RAAQMNTWNKFKTFNIDDQSSSAGIASRLRNLATEWKSLKLTFTEDTFLGFVLQDSVGVTSTVAQDFNNRVESLVQSDPK
NPTPTFEKLVHLLEICRQQHSLSTTASTQPATPSIFTQRPSAVLQSNVQHPDPHQPFDQDAYLIGVHPDDWEEALNCYTV
TANRCWGCGDSTHYLSDCPKRSKGTPMARRTRGPGSYTFRQHQIRQPPYNPAPCYPIVGAMFPPPGLPFPPQQSYSQFQQ
PSTFQSPYQNYAPPAQNNYRQPGLRQADSFVPQYTSPAPTQSSRNHQPSNRSNHAGGASARNVETEGLGEDLSEVDFRAM
TARFSDVSIPAIIDSGASHHLTGELQFLHNFRELKERVPLNVATKGSGASISGTGDLHFRAPGGSTISLKGVLYCEQARS
TLISLAALRKANSFFDYNGQTDSFEIYDRSRRHVFTCVFERSKNRWCIPYPMVATTESIPSNSHISYLHSRVSSPAFLSA
NNKKPAISYDPFITPFERVYPSSWNPESLTASEKLLLFWHRIFGHASLRKIRSLIKKKLGIGLPEELPAGQIHCPVCAIS
KSTSLNPVTSSMRQPARLDILCTDLMGPFPEETPDGCRFLLTLRDVFSGYSYVKLLKNKSDANQVLISAINILENQTGRR
VHILRSDNGGEFANKEFADFLNTKGIIAERSLPYHHYQNGVIERFNRTIADMGRTVLNDSRLPRSFWGFAFVWANHILNR
IPNKASGDKTPFEAMFNQSPRFDGFRIFGSKAYIHIPPEKRDKLADRAYEAIVIGHLEQSKGWLFYLPVEKKFVSSSMVR
FVDSLQKFDAPPPSTATYRPALTNSPTNKMSLGFIANQLELGNFRHEEEFANQELIIDSILESCEFFGIDIPRTYKQAMK
SNDKSSWMAAVDEELRNLDRMEVWVSQMMPPGKSALDGRWVFARKSNPDGDPDRFKARYVAKGFKQIAGKEFGATFAPTA
TFVSFRLLLIIAGHFGWPVHTFDFVAAYLNSPIDEEIWVKPPEGVQLPTGHAFLLKKALYGTRQAARCWWLHLRAILDKL
GYSPSQYDNSLYILRHKDIHGVIWIHVDDGVVTASTVDLLRQLETDLKDVLRIKWSTNLESIIGLTVQRTKEGFILTQPK
LIKSLLSAEWDGAVTVKTPLPPNFNATTEGGDVSTSTKYLSVIGTLSYLAVGTRPDIAFAVNYLARFSAKPSVLHWKGLR
HLINYVAGSANQQLCLFPKKESHDLKTFADASWGGEFSRSSYGVLVKFLGCPVLWISRRQASVASSTCHAEYMALGAATR
HTLWVRHLLKDILNQDFVGLLHCDNQAAVHVSTDDASNKRTRHTDRDFYITNEALFKKLIQLVWVPTKQQLADIFTKSLG
PEAFNSMRDSLLRPG
>Copia-3_ST#LTR/Copia 89-4564  [Solanum tuberosum]
MAIENASAGGSSGRATGDAINGSSVTLDHNHPLYLSSSDVPGALSIGIQLTGMENYTIWSRAMEIALLGRNKLGFVDGSV
LRNDFEGELKKIWDRCNAIVISWLTYNVSKELLSGILYSSSAHQVWLDLKERFDKVNGSRLYQLHRSIFTLTQGILSVSA
YYTKLKNLWDEYDSILPPPSCDCSKSKEYVEQMQYQRLLQFMMGLNDSYSQARGQILMMHVLPNVNQAYALVVQDECQKG
IAGNINERIESLAMYTNRTSRPQQFNNRQNPKRNYQSLYCDFCNMRGHVREDCNKLKKCDHCQSTGHVKENCYLLIGYPD
NFKGKKKVNAVIGGGSMQKQDSHSYMQQQDSHSHMQAHMDRITHTLGAQNTQEQWLELLHKSSPQQIQLMLETLQGCNPQ
SSVNMAGNSNSHLKLKWIIDTGASDHMINNHHHLVNENIVNSRGKVQLPTGESAVVSHIGSVQLNEFDMISEVLCIPTFK
FNLLSVHKLTKELNCYVSFFPTYCVFQDLLSGKVKGIGKVEDGLYVMHWPEMQPNVKSHTMSAVKEATTDPELWHKRLGH
VPMGVLRRINEFNASSSFTIDHCVVCPQARQTRIPFSQSSTTVDDVFDLVHMDVWGPYKVATHNGMRYFLTLVDDKSRWT
WTFLLCLKSDVIVVLKQFLTMIKNQFGKCVKVFRSDNGGEFFNSSCCELFVSLGIIHQRSCPHTPQQNGVAERKHRHLLE
TARAIKFQSNLPNRFWGECIEAATYIINRIPLSVLQNKSPYEVFYGKQPSLSHLRVIGCLVFATNLNMNDKFAPKARKAV
LLGYATSQKGYKLLDIESKIHFVSRDVKFHEDVFPFQTSGSGKDKDQGVSLSYSRMEDCELTPCVVFRNTVDAPATVTPQ
TVVTDSFCPDSAIESQDQVPLVSSPEPSILTPQLPVATRRSNRPAKPPIWHTDYILSKNKAAGYCSYPITDVLDYQSITP
AYRSFVTKFSQEKEPASYKEAIQDPRWIAAMQSEIQALDDNHTWEITTLPKDKRAIGCKWVYKIKYRADGEVDRFKARLV
AKGYNQKEGLDYQETFSPVVKMVTVRSVIALAAAQHWQIHQMDVFNAFLQGDLTEEVYMDLPLGFVHQSGKGTGTVCKLT
KSLYGLKQASRQWNIKLTTALANSGFQQSHYDYSLFTKHQEKRLVMVLVYVDDLLITGNDHKLILETKKILQDNFKIKDL
GELRYFLGIEFARNNNGILMHQRKYCLELISDMGLSSSKPVGSPVELNQKLTTAEFDLHFPPTDEQDELLNEPEIYQRLV
GRLLYLTMTRPDIAFAVQLLSQFMHNPKTSHMNAALRVVRYVKQSPGLGILMASTADNHLTAYCDADWASCPNNRKSITG
YMVVYGNSLISWKAKKQETISRSSAEAEYRSLASTVAEVVWLVGLFKELGVQVRLPVHIHSDSKSAIQIAANPVFHERTK
HIDIDCHFIREKVQMGIVQPVYLNTTEQPADLLTKGLTCLQHSYLLTKCLQT
>Copia-3_SCH#LTR/Copia 40-4754  [Schizophyllum commune]
MAPKDSKVPTLTDAADWPLWRLRVTDALNRDDLTSVVTGSEKSPPPEIAVTPPTPTTSSPPSTSPGAPATATTSTGSGSS
STTHQVARRETWSWRNARALSTIREHLSNDIALELHEYQHASELWEKLVEKFEQTNTSEMAVTELIKIFRAKLADGDDGD
VSREAMSAHIHRVRQSVTQLATLGYPLNANLVPLILLASLPSSEKWKIVSSGISAGSSKAAPLTLSYVEAKLMAQVTSKE
DSDDEQAYAASSSRAPPPRKPKDKGKKKAKAKATCVIHGEGHSTEECKTIIGQKEKALKKRKERAAEKAKANKVKDSDSD
SDSDSDSDVDDTHVTVSRRAYKKISAYVQSDPKRPQRHQGSHIVDSGASKTMTPDERLFDDSTYRVLDPPRNIYLGNESV
IKAVGIGTACFASKTPDGVRALTIRKTLHVPDLALTLISVPQITKRGLRVSFKDNACTIRDSSGDIACVATRKHGLYHVD
CQPIGTDERAFTAIDINRLHQIMGHTNFESLRNMVRHGQLGEVDTLTGIPSFCEPCVMGKMKKLPFKRSTTPASRPLQFV
SCDVGGPVDPAAIGGYLYWIVIVCHYSSGVYTLFTKKKSEVYKKLRQWRIDMEHQHRDSIEQWEWLPGWVEFTRTDGGGE
FCSNKMEAEFRRRGIIHETTAPYTPEQNGIAERMNQTLVTRAIANLCAAKLPRKYWMYAMEYATDMINLSPASRQKGELP
INRMRKVKRPIDVHALHPFGCPAYPLIPKKKRKGKFADRARRCILIGYAWSEGTKAYKLLEIATRKVIISRHVKFDDASP
SPDEMRAGEDDVSAEQWEDFGKYFRLPPKDTPAPGAGSDSEDDDDDDAPAQPPAAGSVGAPRPPTPEPVGDDRPPSPDSD
GPPPPPRPPKTRIPRRSLPPATPPPAPAPAAGPSRRPGLRKPEERTANQHKDQGYINARERQENHRKVSAQQRKQREANI
RAREQQLEENRRRREQPPQAEAPPPPPAPAPEPEPAPAPTQGGGDPPGQPDEEGESVNFAFLNDELFAGTASGGRSSSGA
RKIPTTWKQAMASPERDKWLDAQSEELNSFKLNDVYEEVPIPEGVKPITSKHVFSLKEDAQGNIERYKVRIVARGFTQQE
GVDYQDTFAPVASLESIRIILALAVRLGLYTDQMDVNTAYLNGELLQTLYMLPPTGVDIREGYCWRLKKSVYGLKQAGRA
WNQTLHNKLDKLGFVRLNSETCLYVFRDGKQVCFLVVYVDDLLLAATSRPFMDSIKKKLTASFKMRDLGPAKYLLGIEII
RHPGKRTISLSQRKYIDTVLERYGMSDCTGVSTPMSTSTRISADDPNDNEVRTHMALVPGGPVVSYQSVVGSLMYGMMGT
RPDTAYVVGVLGRYSAAPKACHWELAKRVLRYLKKTRDWCLVYDGADAGMDLDFHGYTDADWGGCNDTSKSTSGFVFISS
RGAIGWSSKRQSMVSLSSTESEYIGLANAGQHLAWLRSFFEELGRPQAGATELRCDNRAAIILSQDAQFRARTKHIQRKY
HYIRDGLVATGECVVLWYPTDEMVADIFTKALPHEKHLKFCQGMGLRPDSSG
>Copia-3_ADe#LTR/Copia 64-3576  [Auricularia delicata]
MLPEGTNRRSNRRRPRLLDRLSSLPLTEDAAELPLLARLSSPPPERPASPFPERNRPPPALLSRLSDHPFSQRQRSPSPK
AGTSLPLLARLSSPVPPDPRQAFPAQRRSPSPSLHLVPRSSSPSFRPAKVSSSSLQPSPAEDPQPAAASPPTQSPAVRRL
YQLFAADEPTATKPSASSSRTSWPAAVKLATSPPTSRPSSSTKPPSERQQRLAELQSRLTQLKEEVAQHPARSLALSVSP
RLLPRRTSPSTPPTTLTATSAPLTTHVPLPSATLSRPVVSRRTSLRPSTLAPTIARTSSVPSTTSSGMASPLPSPKTSGR
PSWPTEPSTSTESSAPAMRLTSPTGPLTTSTALTDPRSSLADLASPAGFQTGPSGSNASMTGTLQLFTPIPTATSSSART
TNSSAASSTRCISRVTAPSSRPTSQCATRSPSTTATPSSTRPASPTFTTGSPTPGAAQSLLPPPVLSPSVSPVAPPPAVP
TPAARSATSSTMDTAASASAAASTSAASACAAITPPKTTPTSHAAKRKRELEDELEDAAAAQTRLPPFARGMLFDPPDPY
SSLVAPSIQNTFSAYPLPRPPQSEFENIAAVNTIDSHPELFKIVTPINPARLADLLRDHPNRPFTASVITGLTEGFWPFA
NTRPSGAPLTADYTDHKPWPADKLRFYEETRDEEIAEGRWSHDFGPALLPGMYSSPIFAVPKPQSDKFRMVTDHSAGEYS
LNSFIDRSSVPTKLDTVRDLAVFLRAYRARSSRQLRLFKSDVSKAYRRLPAHPLWQIKQIVSVNGERHVDRCCCFGTAAS
GDLFYSVMALVLWVAVYVRKVDAALVYVDDSFSFNDLANLVLYDPYNIMLPRKQAALLTLWDEIGLPHNPEKQLHGLTLR
IIGFDVDPNAMTISYPEESRRDLIARIRNFVAPRSADDRMTRPLREWQSLLGHANWALMAFPLLRPGLSAAWDKCSGKTG
PSWPIILNSTVVRDLTWFADALEQAAPLQLLDANNWRLPEADLTLVCNASLEGLGFWIPRHARGFAAEHPHPNIIFNESL
CVLSALSHAAHHAESPRRIALFTDSQNARDMFNSLKAKPAYNELLFAACDLALSTGVSFRAYHLAGAKNAVADALSRGLL
DKARVLAPGLEIASFTPPSTSRANPHAPIPQLFHNTRPARNMDDGAAAHRA
>Copia-2_EPa#LTR/Copia 117-4185 via tfasty with ATCopia37, 78.9% SW:3623, 4 frameshifts and 4 stopcodons. [Eutrema parvulum]
MESVQGKFEMEKFDGNGDFGMWKFKMLMQLELQGLGKILEPEISGESAEEIKDDAKPGSSITKDPLHKEKNVRARNLDMF
NLTNIVLRKVMKETTAMGIWKALEGDYQTKTLPNRIYLKQRFASFKMAEHQSIEENLHVFLKLVDDLASLEINISDEDQA
IQILSSLPQQYDSLVHTLKYGNGKETITVKDVVTSAYSKETELREKGLLGRSKANGEGLVASRGRTEKRTSQKGKGRSKS
REKNSRKLNGQSKGRECWICGKExHFKRECPERKESKNTSANVAQRDEPMVLAVSIQNTREEWVMDSGCTFHITLNREVL
FDFKEVEGGKVLMGNNTYSEIKGSGKIKVVNPDNSVVILTEVRYMPTMxRNLISYGQLEKNGYRYEGSAFEVNFYKGERK
VLSGKxDGGLYYLQGTVEVGTATIARPEIDKTKIWHSRLGHMGLKGMNVLVKGGYLDSKEVHTLDFCEECVLGKTHKQSF
PKGKHNSNQVLEYIHSDLWGSPGVEESLSGCRYFITFIDDYSRKVWIKFLRSKDEAYQSFDEWKLLVENQTGNKIKYLRT
DNGLEFCYQKFDNLCKRSGIKRHKTCAYTPQQNGVAERMNRSIMDKVRCMLTETRFGKQFWAEASSTAVYLINRSPTSAL
DFKIPEELWLGNKISLNHLRRFGSTAYVHRSQDKISPRAVKGFFMGYPQGVKGYRIWIPEDGKCTISRDVVFHEEHMFKD
HISERGEKKGKRVKFTFDRIQDHTTQGSVRETSVSGGAISESESDSSSGEESITEKTSEQGDPEYQLELEEEPPPVNDYI
LARDRGKRIIKKPAMFESGDFVAYALSCAQDIDIEEPRTLAEAKRSKYWKEWKQAMIEEIKSLNKNHTWDIVSKPDRKRT
VGCKWIFKFKEGIPGVEPPRFKARLVAKGFTQIEGVDYNEIFSPVVKHVSIRILLSIVVNYDLELEQLDVKTVFLHGILE
EEIFMNQPEGFEEKGKEDKVCRLRKSLYGLKQSPRQWNHRFDEFMKSEGFTQSTHDPCVYFKGDKIQDKVFLLLYVDDML
VASKDMKKVKKLKERLKEEFEMKDLGPASHRILGMDIIRDRKRGTLKLSQEKYLKQVLKTFNMQSSKSVITPSNSQFKLR
KLTDKEIIEESKYMNSVPYASAVGSLMYAMIGSRPDLGYAICLISRYMAQPGRSHWAAVRWVLKYLSGTLSVCLNFSKQD
KFEIVGYSDSDYASDDRRRFISGYVFQVGGNTVSxRSTLQSVVALSTTEAEYMALTEAAKEGKWLTSICKEIGFNTERFV
LHCDSQSAICLAKNAVHHDRTKHVDTKFHFIREKVAEGLVDLQKVHTSKNAGDFLTKSLPGNVFEKCLVTLKVST
>Copia-2_DKi#LTR/Copia 129-3668 via tfasty with Copia-1_DYa, 65.2% SW:1997, 4 frameshifts and 2 stopcodons. [Drosophila kikkawai]
MNPSMNSIERLDDENYSAWAVQMKSVLVYADLWAVVCRRLKNEDDSQEVKAAFDVKDEKALASIMLRIKPSQINHVKHCV
SSAEAWEKLLAIHRPTGPARRVSLLRQLQSFExKWQNERMSERNKQVFSDVLEKLNEVGVKLPEEVTVILLLSGLSRRHE
NFIVAVECRDQLPTLSQLMVKILEEESRRDDRETGNTSGTEQVFSAKGAKKTTDCDRRQKTKCFACGKRGHIKAQCRKER
EANAAMSAYIGKSGTGDNSWILDSGASSHMCRERSYFETLRESNDSITMASGDKVKAQGVGDVKIESQFCSDILLREVLF
VPELNHNFVSVGKIISYGHSVKFTNKMACVINDENEKLFTAKLDAGIFMARVSSKCKQKIYSVQAEEKSKFEIWHGRFGH
LNQRDLREISSKSIVRGLELKSSRDFDCVTCGTCKITRKPFDRFDGIYTKSKLELIHTDICGPMRVASISGAIYVITFID
DYTRYVWTYFLRRKSEALNVAFVAQTELQTGGKVKRMRSDNGLKYVNAEFREFLRDKRIIHQTTASYTSQQNGVAERANR
TLVEMARCMLEAATQPQFLWAEAINTATYVRNRTITKKLDDKTPYERWFNRKPSVRHFRTFGCDSISLNKKPGKGKFETN
GLKLIFVGYSEQSKAYRLYDVRKRCIVVSRDVIFLEQSFSIGRNNAESGQGNRSGSSYFFDGDICTDGAAGISMESPPDG
SMQEEAIPQEDGIPQDDGIFQEDADQKEDQDLEEESEDEVASPRPRKRGRPRILRTGRPCRPRKVFVVEPTVNLLEVNIA
DPNTVSEALESTYRNEWRKAMSIEYKNLLKNGTWDLVDPSKNHNVLGCKWVLSTKRNADGSIEKHKARLVAQGCGQRRNI
DIVAAYLNGSLQEDVYMRQPEAFIDEARPNAILSYMYTQNLLAEWQMDQCKAAPTPFAMGTTLNKCTDENCSQKQNITEY
QSLIGALNYLSMVSRPDITHTVSKLSQYNNHPHKEQFIAAKRVLRYLQGVPKGITKYRNNFKNLVCYTDADWGSESADRK
SYSDYILMVAGAPVAWETKKQSVVALSSMEAEYIAMCQGTKEIAFQRSILNxMGFLDLVREATTLRSDNQAAIAIASNPM
VHKRSKHVDIRFHHVREQVEKKETTDLRYVSTENMMADVLTKNLSKVKHLKCINMMGLYF
>Copia-2_PTc#LTR/Copia 232-5917  [Phaeodactylum tricornutum]
MARQLRSRIIPALTMDPLEHVLVNLLGATTLDSSYRRFFEEYGITQASELASITEHRLATVSYGVLTPAVGDGPAAIVRT
FLPPAQQDRILKIVQWFLSKGTNVTNDTWLELTSDVLEYWQPASATVAPATPVGSDARSSFVESAAAKFRKTIKNHSVPY
PKFSEDRFWVTWNTNIRIKLRIHGVQLVLDPDYLPETVDETDTFVEMQNFVFGVFNDILLTPRARGILHKHVDELDAQSV
YRDLVASYGKGINAQITATSIETKLTLYSFATSKSKTCVAFLTTWRNLIYDLERINEFPLPDHQKSVRLKSAVRSHPQLK
LFLGNVQLYSRTHVGKSADDSDFEYVYDLMLEHATDIDQTDLEDRGNNRGGRSANNAKFQSSSKKKTNKPIGKKHKNYVP
PEKWNALSPEEKRTIMDQRGPRPAPAPAPALSVNAAATQPPPTVYVSDSTAVDNQSLASTHVPPAAGPGHLLRSLISNSA
ARQHSAPSNGATSDSFSVNGTTYRREVNRASVQYRLSTHDVSLNKDSLVDGGANGGLSGSDVTVISQSLSEATVSGIGNS
ELTNLRLSTVAGLIHTTDGPIIGVFHQYAHLGTGNTIHSCNQMRSWGVTVDDVPRTFGGKQRIVTSDGRFVIPLSVSGGL
TYLSMQAPTEEDLDTFEWVPFTADNEWDPNSLSSPAAADDDLSLQLPVGHVPFRDERINNFGLLAHSAAVSRSPLNVDAL
QPNFGWVPSARIARTFENTTQFARADARLPLRKHFKSRFPAANVSRLNEIVATDTFFSDTPAADDGIFNHGGATMAQLFV
GKSSQITSVFPMKRESQFAHTFEDFIRTHGAPDALLSDNARAQIGKQALQILRMYAIDDMQCEPHHQHQNYAERRIQEVK
KMVNTIMDRTNTPPEYWLLCLFYVTYLLNRLSVESLNWRTPLQVAHGQRPDISALLLFRWFEPVYYYDPDHASFPSHSRE
KTGRWIGVAEHKGDALTYWILTDNTHQAIARSVVRPANVDNGLKNHRAADSSPDGGEPSNPKPIVLATSDLRHDATIDPS
FEKSXAFSPDELIGRYLIREAPDGQSHRALVARKIIDADSDNHQAIRFLLQIDEKDADEIISYNELSDLMEAQQSEPATN
GNIEDHFKFTSIIGHQGPLQPTDAGYKGSSWNVLVQWEDGSQSYEPLIEMAKDDPVTLAMYASDNDLLNVPGWRRFNRLL
RNRDDFNRSVSLVKQRKGDPIFKFGVLVPRNSREALKFDANAGNTRWADAMELELAQHREYKTYKDLGQGAAKPGPGYQR
INVHFVFDVKQSLKYKARLVAGGHMTAPPKDSVYSGVVSLRSIRLALLAGEVNGLETWVGDIAVAYLEAYTKEQVYFVAG
PEFGELSGHTLLIDKALYGLRTSGARFHERLSDSLRTMNFIPCKADPDLWMRDCDDHWEYVCVYVDDIACVSRNPKAFFD
SLVSDHHYTLKGVGPPTYFLGGDFTRDSKDNTLAVGAKTYVKRIISNYKTSFGTEPKLYSSPLENGDHPEVDASQLLDFG
SIKLYQSLIGALQWAITLGRFDIQCAVMTMGRFRAAPREGHLNRLRRIIGYLRRYPDAAIRFRTGIPNHEARGDVPQHDW
MYSVYGKSSDEDSPTGVPPARGKPMRITTFVDANLYHDLTTGRATTGVLHLVNQTPVSWFSKRQSTVETATYGSEFVAAR
LATEQIIDMRLTLRMMGIPLDGPAWLLGDNQSIVTSSTLPHSVLSKRHNALAYHRVREAIAFGIMHFLWIEGKDNASDVL
TKPLGHAVAWPLIQPLLFWKGETKSPACSVSSTSQWGVSTGMTVLNTGSRDGAHYLGRGTQGEPVETNLVCLATNPDTDG
FGQAQSQLSIQKHDVTVSGLDRYHAKKHGNYDECAHGAVYNTVENSETDHDGAWQI
>Copia-2_TA_env#LTR/Copia 8557-11141 via tfasty with Claudia1_TM_env, 74.0% SW:2802, 1 frameshift and 1 stopcodon. [Triticum aestivum]
MAKLSVQEVKNFKIMLHELKEAFLKKRAEAQGSRERMKVLADRCVQAYNEAEKRKALGRPGIDPRMAAKKMKKPTTAEPD
APREEADPIVFPTRMTSSKPKSRSTASELKKTRTAEAEARKRKHPEASPIAPSKKKRKTKKDRAAPTEPLIVEPISMVRP
DAERQLTIHEPAFTEAHEAEDFPAADPIAAEDIGHHDHVEDGAVLPQLEHNELISIGRPLTPIAQDASWADRPQEEEDFE
AQPTPTTQASPAYRRLRKGPRPLVSESEAKAAEDILAASVDEEETPSAATPPSHQEVVLEENVIVTDPPTRQVEVEHLEA
ATTNTTEATDAVMAEANVESSPTKAPEVSKATDPATSIPESAAGPQFDYHVEHRPQVQKTIPRLPRFPGPASAPGSFNIN
GFRADNTFFNSSRNPYSRERISSDRFWSYPQQSYYSCILYNQGRIFPHKRLDIEAIASLPYLEEALDFFKEVGLLPFVTD
QEHWNEELLLQFYATLHIRGYSRDPKTWVLEWMTGNVHHEAKAFDIIELTGLPTPSDLYEHGCQLHSEAIESIFQKTEPN
MSQMLSMMKPLPQDAAYPTEFFVEDLEYLPRTIYHIIRRTLWPIKGHSPHAKLEGEMKTLVFYILHGKCFNAQDFFIRQL
AASGSDLFGLKFYAPWVMRLIKLHSAISYQPSARNHRVYPLAGTTRAPHPALTEATDSTTAPRPKKHTRVLNDRELLVAL
HQKQDRHHDxLKRQMQSLLVDVNRIRNLATKNAFVAHETSCRIWKGLTLMCSKDDLQEDGFTERFKFDSTPPRRAVLRQT
PSLEDSEFSSSAATVTARVIEDEDNATSPPPPSARFDSAPSSSAPPNTTSDPAASPTSHGTE
>Copia-2_SL#LTR/Copia 50-3970  [Solanum lycopersicum]
MSALNVKIDKFTGRNSFSLWQIKMRALLKQQGFWAPLSKDKNAVVTPEMAILEEKAHSTIMLCLADDVITEVSDEETAAG
LWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSF
IVGKDTVSLEEVRSALHSRELRHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNYCKEKGHWKFDCPK
KKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGT
GSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHV
ASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGS
CRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIAR
HRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAF
GCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQVEFQVI
QNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILS
SDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVV
RHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMV
KLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLF
LSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRF
MGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLS
TTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHFLRSEKRIKVKKVGTAD
NPADMFTKPVPQSKFQHCLDLLNIRSC
>Copia-4_DMoj#LTR/Copia 174-4264 via tfasty with Copia-1_DPer, 87.1% SW:4998, 1 frameshift and 1 stopcodon. [Drosophila mojavensis]
QKYSALQFRIREALAELDVLKVVDEAIPHEIDDSWKKAERCAKSTIVQHLSDSYLDFARNNVSAREILEKLDSIYERRSL
ASQMTARRRLTALQLTSEMELSSFFLxTFDEIMSEILAAGATMSEMEKVTQLLMMLPSTYDSVVTAIETLADEFISLAFV
KDKLLDFEIKIKNNRNDTSSKVLKAVVRHNSNFNKKHTFKGRSTVQKRPIKGKGRINIKCHHCGRIGHIKKNCFQYLREN
KNKENNDNENNSKQMQLASSNHGLAFMMRKLIENKSSNSELNFIIDSGATDHLIKDESLFTDCVELEQPMKIAVAKEGVY
ILATKCGIVRLQNEYNITLEDVLYSKEATENLISVKRLQQAGMSILFDKDGVAISKNGVTIVKNTGMFGNIPVVKFQAYI
MNARNNYQLWHERLGHVSKSKLFEIKNNDLFSDSNILANLKISNEICESCVLGKQARLPFNQSKDKNHIKRPLFVIHSDV
CGPITPTTIDDKNYFVIFVDQYTHYCVTYLLKLKSEVFNVFRDFVEKSQAHFNLKIVNLYIDNGREYLSNEMRAFCVQKG
ISYHLTVPHTPQLNGVSERMIRTLTEKARTMVNGAKLDKRFWGEAVLTAAYLINRIPSRALGSNQVTPYEMWHNRKPNLK
SLKVFGSTVYVHNKNKKSKFDEKSYKAILIGYEACGYKLWDVMKKKVIVARDVIVDETNMINSRAVNVDNVLNESKESKL
DNVLNESKESNVDNVLNESKESKLDNVLNESKASKVDNVLNESKEYDQPEFLNESKESNQHNFSNENKKRKQFDPLNDCE
EVYQSQKKTDSNVATRRSERLSAKPRISYNKDNDSLTNYVLNAHIVFDEIPSSFEEIKLRSDKSAWEEAIKTELEAHKIN
NTWTITKKPADKNIVDSKWVFSIKYNELGVPIKYKARLVARGFTQQYKVDYDETFAPVARIASFRCILAEAVQYNLKVHQ
MDVKTAFLNGTLNEEIYMQPPQGVQCDEGNILKLNKAIYGLKQAARCWFQVFEQVLKECSFINSQVDRCIYILDEGDIKE
NIYVLLYVDDVVIATENIKRLNNFKGFMSKRFRMTDLNEIRRFIGIRIEMNQDKILLSQSAYIKRILNKFNMDDCNPVST
PLPNKLDYDLLNSDDECNAPCRNLIGCLMYVMLCTRPDLTTAVNILSRYTNKNNNELWKCLKRIIRYLKGTIDMKLIYKK
NKLHENILVGYVDSDWGGNQIDRKSTTGYLFKIFESNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKSLLTSISI
KFDKPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFSREKIENNHICIEYISTEKQLADIFTKPLPAGRFAELRDSLGL
LQEK
>Copia-7_PR#LTR/Copia 6-5038 via tfasty with Copia-115_SB, 52.6% SW:937, 3 frameshifts and 3 stopcodons. [Phytophthora ramorum]
MSPKHGRSSDSKMSKPMKYTSDGVPKNWDGKDWQTYKWAMLTVFEENNLEDIADSTLTAAMLQTSSEEKKEEFRLKQVKI
KRMVGTSVPPEILQQISDKKTGSDMWEELCDLFEGKQSEATRAYTIRRLVSELWQMKLSPGADANLHLCKMFSVRTELTN
LKYTIEDMDMVEMMLESLPYQTEFESxKSSIRYGADPSVYTPIKVRELIRAAAVRQTAFRGKRSWKSGNRKHDGGKDGDH
GKGGDHEKGGQQGKSKGKPRACFVCGSEDHLRANCPDKDSKQSGATGYEQKRKPKSNVTIRQIGDEPTGVRDYNSRVVAG
AVTEQPMDEAADEQEVDTEVAELGVAELRVQEDAESAGAEPVDGAAADNLADANQGAPAEAQGHWWYFDTASNSHVIGDR
AYYVSFTEDTTEIQSVHGITPNLASRITGVGTVAIVTEVDGEQTVVYIDDVFYIPRAEFELFSPGLARDQGFEFAVDPAT
MNFHISIEGRTVIVATQHDAMWCFRVTHPSIPGNLNIGPECRAVCNYTVAEGVAPLSLWHERLGHTCPQYLKTMVDKGLV
RGMMLTQRQLDTCDACHLAKQKKSKHRKKLDRALKRPNQVVYADLLIPSKSNGTRFEAVLLIMDGYSRYVTVKLLTSKSS
TKVNQHLKQYVLWAERQAGRSMGEISFEVNQALTDKGGEFVNTAMADWYAPQGIEHVRVGPKSSQLNLCERTHQSLVEMT
KATMLQAGFPVSLWPEALRNAAYVKNRVYNKGTQGIPYEKMFGIKPDVHHIRKFGALAYVHVPVTPGRRKHHHNAKIGYA
LGYAEDVVGCKVYYPDERTAKFVTDLRVAEDVVYRDRHDAELDEDDLSSLHFTKPVPDNDACKSSMAIVEINSTMPSGLE
EGEDVVDESEIMDTIELNSLYDAEDVDDNVEGITDVVNDADVDTGRVRRDHGACEEVEHTESQETASTGHEEPVADGEDG
VGADSSTWRQRLPQTANPDLDSDDATASVVAxDEVVSDAGTxGSSIAEEDHEGDDQDLSNEEITIASVFASEDDEDRNSS
NILNLEEDMDNEKEESKSSTLSIQHGNDREVIDASAVLTDNQLKQTGKRAHRDETQSEEERVEQEAAKAKPKKTRRGLLE
ASERRRPVYLKDYVFNAVQATSRVLDRNRKPIRGSDAKIPRNRCEMLRSKWKEFFLMAEMEEMAALKAKGVIREIASEEV
PNEALPIKTMWVSAAKTDHQGFVIRFKARIVALGNYERSGVDFRETFAPVARMSTFRLLLALAAKLGLHVYGGDINTAYL
NAWLRIRQYLRSIDGHRCEVNGHMYVVLKALYGLRQSGRDWNSELNQWLREHGYQQSLTEPCLYYRFDGDTIMYVLVYVD
DIFVATNNEQCKKNLFEDLDRAYGIKDQEQLKEYLGIEVDQTAEHIMIRQSKYAREILEKFGYSEVHAVGNPMEVNARLA
PTNDEEEVNTEFPYREAIGMLMYLTTSTRPDLAPVLSQLSRFVARPSAKHVGTVKRVLRYLAGTVDYGIMYTRQQQTSDA
VQLHGFCDSDWATDPEERKITTGFVYELSGGAIAWMSCRQSVIALSTAESEYVAACEATMEALAMRNILQEILPYNSIKL
QLGIDNQTAYVMATNPLYSRRTRHIELRWHYVREQVERGAIKLHKVKREDNTADSFTKPLEKKRLKRLLQGIGVGAAD
>Copia-7_Mad#LTR/Copia 2751-6877 via tfasty with Copia4-PTR, 3 frameshifts and 4 stopcodons. [Malus x domestica]
MTSLNFNNIETLTGSNFKKWKEDVEIVLGLMDLDLALREEKPKAITAESNVDEKVKLEKWERANRMSKGEFLRHDNAREF
LAAVGKKFKESEKAETGTFLTxLTSMKYDGVASVREHILKMVDLAQKLKDLEVPMTDQFLVHMALNSLPPKYGQLKVSYN
TQKDKWGIDELISMCVQEEDRLKKDKVVDVNLVQAEKRKRDSTFGSTIPAGKKKKKENFSSFKSTNPFKGSHKIKYVNVE
IEKEKECYFCKETGHLRKNCSGFKNWLVTKGKIINVFVCVESNLVFIPPQSWWFDTGCSIHITNSLQGFTKTREINNEVY
NVYVGNGNKVVVESTGRVELVLSSGFVLELSPVLYALSMRRNLISASKLVKSSFTFVGDDHCVKFYHSNNINEMLGKAYL
EIDMWQLDCSYTNECFNVQAVGSKSWSTSEKSSMLWHKRLGHISKERILTLTKQNLLPQLDFSDFKECVDCFKGKLTNTR
KLGSNRSQSLLEIIHTDICGPFPNKTICGKSYFISFIDDFSRYAYVYLISEESEALECFKSFHLEVEKQLEKQIKIVRSD
RGGEYFGRYTEVRQHKGPFATYLEQNGIVAQYTTPGTPQQNGVAERRNRTLKDMIRSMFAHSHLPIFLWGEALKTATYIL
NRVPSKSVNLVPFETWTGRKPSFNHFHVWGCKAEVRFYNPMEKKLDPRTTSCRFIGxFERSKGFKFYCPNSHCRIMETHN
AKFLEHLDGDDDNSSRSISFDFEELPQEGELLEQQAIAVSIPFEPQAFTSPDSLPEQQVEGTMNENQTLHDEEQGPNIAE
MEHDNINDHIEGIDAALIQAPVRKSQRVRKAVTLPNFVYLNEVEYNVGDDDDPTSYYQAISSTRSKLWNEAMHEELQSME
KNRVWTLVPKQMEVHKLVGCKWVFKINRDSEGNIDKHKARLVAKGFTQREGVDYNETFSLVSTKDSMRIILDLTTHFDLE
LHQMDVKTTFLNGDLEEDIYMSQPPWFVERGKELMVCKLNKLIYGMKxASRQWNKKFDSVMEKLGFQENKLDECVYFKVY
GTKVIFLVLYVDDILMAGSGMFLLQSTKGMLAQNFDMKDLGEARFVLGIEIIRDRAKRSLGLSQRQYIDRVTKRFNMDKC
SNGELPIGKxDKFTCEQCPKNDLEKEGMKDKPYASLVGSLMYAHVCIRPDLVFAVSVLGRFQSNPGASHWVAAKKVLRYL
KRTRDFMLTYSHVDKLELVAYAGCIDDRRSTNGYIFLLVNGAISWKSLKQKSIASSTMEAEFMGCYATIQQAIWLKNLMK
GLMIIDNIERPLKLYCDNKVAVFFSKNNKRSYASRLMDIKFLKVREVKKGTIDIEYINTSLMVADPMTKALPVGIFKRHV
FNMGVRESFDSVNEWE
>Copia-8_CPu-I#LTR/Copia 97-5316 With some nasty low complexity regions. Sorry. [Coniophora p]
MSSRRGRDTPHSGSSMDLTSVYNSSPYLPLVSVPHPTSSRPPRGPLSSISSRRPRRPTSRSSYRTADAGSDDSGDSPPPV
VRPKRPTRPRRTRSRTRRAPSPAPRMPSPAPRESFPARQTPPHFFDTVAPSASRDHVRTSLFDTCQPLFAPVDPLPSSQT
QLPQQPLPQPDMHSNPLAPQQPPQQQTSFPPHQFPQQHFFPYAQFPFNPYSMPYSAFAYQHPVPPAPHYTTAPAPGLAAA
PAPAPAPAPAPAPAPAPAPAPAPAGTFASAVPAPLGVLPRGVGPRAYLLPPRPGKLHNIKIELHHAAAIPVLDRSKGNWL
AFSVAFQNFLRMHNLDGFFDGLYPVPDDSMSYDDAVVWGQLNNAIFGLLMEKLAPEERQYIASEETCISAYSILRDRHEK
LAPLMEVELWQKLFSTFFARSERLDSTVKWIRETCHSLLLMGSLTEEKLMAITLMNALTRDFGHIKHDVATLLSDVESQA
DFSVALTRILRRIETEQSALDIDRRDPEAALAARMSGGRPLPPCRTCGGRHPTDRCWQPGGALEGRRPEASDPRRPRTFA
PSSTRANASPRKLYFFDDASQTFMPEPSDDSALVSEYAAVAAEQLTDEQIAAVDVDANVHEHQSYFLNSEELRASVDWAS
LSSTPSTAFLASTALNQRTATVVDPDVVPFYLDSGASAHISSDASDFYQLSRITPREVHGVGGTRIHAEGIGTIRLSFGK
GLHVDLDNVLYIPAASVRLVSVSSLARSSKFKSTFDDANCLIRNPSGAIVMRGSLTRTNLYRLLGSRPLALHVFLASRVP
SLLTWHRRLGHASYQSIIDLVRGRMATGLLIDLSELPPKCDHCILGKQTRSSVPKVREGARATRRLGRVHVDLMDNSSSP
SSRGHLYIMNIVDDFSRFSWSIPLRSKADAFPALRDWERAVSLETGLTVGVFCFDNGELKSTDLREWLATRGTQVQFTAP
YTSAQNGLVERYHRTVMGRARAMRIACGLPPRFWDEFVLTATYLAVRTPCRAVQGKTPFELWHGHKPDLSNLREIGSRAF
VLAQPHNPKVQARSIECVLVGYAVDSKAYRCYHKATGRMITSYHVSFIESHDDERFVRSPSSVPTLSTAPSPAPIEPTAT
SSDSVDNCSASRPAPRPSSSAPPTPPLPRRSSRVSKPSEKVAPVRHLDWRQRFDRVLGDIHAHHSALAFPMISVDSNYRD
PLTVKEALASEFGAQWDGALLEEFAGFRAKGVFRLVPESSVPPDKTIMSGKAVFKLKMNELGTPERFKARWVCRGFEAIY
GHDYTRTTSPTARLESFRILLNLAAAFDLECEQIDVKTAYLYGDLEPEEYCYMYQPKGYEEPNSAGMVWQVEKGLYGMKQ
GGRVWNKTMHKALTDWGYTRLSCEHCVYYRREGSSFTALAVHVDDFAVAGKTQADIDRLKAKMKTLWEISELGPVKFCVG
IGIQRDRARRTVSLSQTALIDKVLAQFNMTNANPVDTPMESDIVSKIRRTPHSAMDPSVLAEVSKLPYRSLVGSLNYIAV
GTRPDLSFVVQWLSQYLDAYSHEHWAVAKRVLRYLRGTRDLSLTLGGFRPFELSAWSDSNYAACPDTRRSVTGYCTTLGG
GCVTWSSRKQPIVTGSTCEAEYVAANGAVKEVMWIRNLLAGLGLPRSGPSSVWCDNRSAVHTAEDPYNFAATKHIDVRYH
FIRERVEDNTIRLLDIPLADNVADIFTKPLPRPAFMKLRRDLVLTPCLPGSMRDVRAKLH
>Copia-8_ST#LTR/Copia 82-4470 via tfasty with Copia-57_ST, 77.1% SW:3968, 2 frameshifts and 3 stopcodons. [Solanum tuberosum]
MANAKFDHNHALFLHPSDTTGTSIIPMQLTGSDNYSIWSRAMRIQLLGKNKLGIVDGSWKKEDFGAELSHQWERCNAIVx
GWIMSSVTQDLHTGIVYATSARAFWEDLRERFDKVNASRIYQLHKAIATTVQGTDSIPSYFSKLRNLWDEFASIVPPSCQ
CPNSKEFSMHLERQKLMQFLMGLNENYDQSRSQILMVEPTPTINKAYAMLVERESQRSIASSSLSYEGTDLAALMAGKGT
HSDFGAQISGKTMPPRYNKGSPSPQSTSQYYSKGKKNWDLKCDYCKIQGHVEDNCFRLHGYPPDWKFKKKGGGNNAYNVQ
ADNSSSTSSGLRDKTMDQLVPKDLPRAPQMTVDQHGQVMQMLDGNISTAHVMANMAGMVHTPMSKIANLRWIIDSGATNH
MISSLDVLHDVQPVKTTQNRKVHLPNGGNTLVTHTGSCKFADTGELQDVLFVPEFHYNLLSISKVTKELNCFVSFYPGFC
LFQDLSSGKLTGIGKEDDGLYYLVHSQKSSIHDKVKSFAAHDDRKEILLWHRRLAHASIGSMKDLLGYNVDDCKMALNNC
EVCPLARHTRLPFTNSATRSSKVFALLHLDVWGPYNTPTFDGNKFFLTIVDDFSRTVWVFLLKFKSDVLMTLKQFFTMVV
TQLKTNVKGVRTDNGGEFVNGSLQDLFKELGIIHYRTCAHTPQQNGVAERKHRHLLEVARALRFQGHIPIKFWGHCVLTA
AYIINRLPSQTLNGRSPYEVFFGKKPCLSHLRTLGCLCFASTLPRTDKFAPRAVRSVFMGYSSVTKGYICFDLAEQKFFV
NRDVIFHEDRYPFLHLSQAPADPISHISSYFPESFPHNDFLSNPSDPIPDFLPSSPPSLDPPVDHVPTIPTVTHVSPTSS
IPQLRRSTRISKQPLWLSEYVSKPSASTILYPLAASISYNNLSSSYQKYLQAFSAVIEPSSYKEAMSDPRWLEAMQAELQ
ALQDNHTWDLVPLPKGKVPIGCRWVYKVKLKANGDVERFKARLVAKGYTQREGLDFHETFSPVVKIATVRTVTSLAAQCN
WSVHxLDVYNAFLQGDLYDEVYMQLPEGFTSQGESRLVCRLVKSLYGLKQASRQWNLKLSEALLGSGFIQSSLDHSLYIK
RSGSDMVVILVYVDDMLVTGNSLTIIEHTKATLQKAFKIKDLGELKFFLGMEFSRSAKGILMNQRKYALEIISDLGLGGA
KPAWTPLEVNMQLTTPELDCIIGKLDDEPFADREQYQRLIGKMLYLTMTRPDIAYSVQTLSQFLQRPKQSHWEAAMRVMR
YIKREPGLGILLSSNKSNNLSVYCDADWAACPNTRRSVSGYLVKHGDTLLSWKSKKQNVVSRSSAESEYRSMANAVSKLV
WIIALLKELGSEVEQPAIVYSDSKAALQIAANPVFHERTKHIEIDCHFIRQKIQTxMMRTEHVSSKEQLADILTKGLPRS
QHEVLVSKLGVLNVFAPTSLRGS
>Copia-8_GM#LTR/Copia 65-4037 via tfasty with Copia-93_GM, 79.8% SW:3656, 1 frameshift. [Glycine max]
MATTLSNNGFPAHLPIFDGKNYDQWIAKMKVIFRFQDVVEIVNTGVAALPRNPTDDQNAAHKEQKKRDGKALFIIHQCLD
ADIFEKIVHCENAKEAWDTLARNYCGDEKLKKVRLQALRRQYELLQMTEGETVNQYFVRLTSLTNQMVRNGEKISDLMKI
EKVLRTLTPKFDHIVVAKEESKNLDELKIEELQASLEAHELRLNERSKIKDKSNESAADQALQAQHQKKGKYKKGKRKNQ
NPKNSNKPTSKGHDHSSQEGNKGQKKKINKKDIQCYNCQKWGHFAAECKSKKVPREESDEAQFVHDNEGYDSEGAMLMAI
IKEEDDDDQWYLDTGCSNHMSGKKTWFCELDDSVVNAEGIGKIKIQSKDGKDSFISDVLYVPNMKSNLISIGQLLEKGYT
VRMEDKILRIFDNKMRTILKVQMSRQRTFKIGINIVENQCLLTKAGNENWLWHQRFGHLNFGDLNKLQKKKMVIGLPQIT
EPDKVCDKCCISKQSRSSYNTEIPTRATRKLETIHSDVCGPFEVKSMGGNNYFVSFIDEFTRKLWIYLIVKKSEVLDVFK
KFRIMVQNESGEVVSKLRTDGGGEYTSNEFRSFCESNGIKHEVTAPYTPQHNGIAERKNRTIVNMVRSMIKEKGLPTYLW
GEATATAVYLLNRCPTKRLEYVTPEEAWSGIKPCVKHLRVFGSLCFRHIPDQLRRKLDDKAQAVVMVGYHSTGSYKLYDP
IEKKIMFSKDVKFDEASSWNWEGGSSRKNSMVYLNDTESPVQEVNTNQGGASERPTRNVQAPQRLNDCVRFPDTAVADDG
ELIQLAMLAESEPVSLEQAMKEEHWRNAMLDELQSIEKNETWSLVKLPTSKKCIDVKWVYKTKLKPDGQVAKYKARLVAR
GFLQRQGLDYNEVFAPVARMETIRLIIAIASWKSWKMFQLDVKSAFLNGELEEEVYVSQPPGFEIKGKEDYVYRLRKALY
GLKQAPRAWNKKIDQFLISQGFEKCITEHGIYFRNSDDNQKLIVCLYVDDMIVTGSDTMEIEWFKEAMMRKFEMSDLGVL
SYFLGIEIVMSTEGVLIHQKKYARDILKRFNMNNSKPVTTPIDTGTKLIKEGVEEPVDATLFKQIVGSLRYLCHTRPDIT
YGVGLISRFMEKPMTSHLVAAKRILRYVKGTEGLGILYRTGIDTPDAELYGYSDSDWSRDVNDRKSTAAYVFMYGNAPFS
WCSKKQAVVALSSCEAEYIAASMAACQAQWLCMLMQELGLKSDDKVRIMLDSKSAIDLAKHPVAHGRSKHIETRYHFLRD
QVNNDKLELLHCKTEDQLADILTKALKTSTLENLKMKLEMNSTS
>Copia-7_CPu#LTR/Copia 141-4763 71.6% sim to Copia-1_AB, SW:3479, [Coniophora puteana]
MSSSQPVTTDTLPSNVPKLDPRGANWAIFSIRFQTGVQAKPKLWPHFCGTAARPNAVPAIPAAPAAAAVPAVPAAPAGQG
DDEDDEDPSPPALTPEVQAALDKWDERESLAKNLLLGRMPDSTVLKIRNLPTVATMWAKVVQEYTQKGAYAQTELRSDFL
NSKCPKDGDVRLWLDGLRTKKEELASVGVDINDADYRSTIISSLPKALASFASGQLTAARLYAPTGTIDPDTLIQVIGEE
YERIKPAPGTRSSRTHKGDEAMAFAPGGGSRGPVRKEGRSCWKCGEVGHLHRACPKNAKSSSTTAGGATGTDSANAVDDS
DSDSDVAFAFSEESDDNSMSSISEDDSDSMPDLELVSDSDFDSDESDNEVESVLGDWETDSSISDNAFPVDAADAAEDSA
QGDAHATLVPADVETPPTSRTELYDSGATRHISPYQSDFENFVPISPHPFMSANQQRFHATGSSELVIDIPNGMDISKLR
LTEVLYSSEVGYTLVSIGRLDKLGYCATFGDGACTLHAPDGSTLGAIPRTSRGLYRVVHSGDEDRASAAADDVTVMELHR
RMGHISPLAARKLASDGLVTGLRLNDDPSEPLFCESCVYGKATRKPIAKERLGDRSEAFGDKVFSDVWGRAPVTTLGGKQ
YYVSFTDDATRLTHLYLLRAKSDTFEAYKAFESLCSTQHDAKVKVLHSDRGGKYLSGAFTAHLAQAGTRQELTVHDTPQH
NGVAERLNRTLLERVRAMLHASRLPRSLWGEAVHHAVWLKNRTPTKALDGRTPYEAAHGTLPDLSGLREWGCLVWVRREG
ALKLGDRVSCGRWVGFDDRSSNGHRVYWPLSRSVSVERNIYFDELSAASREGEDVPSTTVTLSSPVAATAPASDATTTAT
PANAPDVNATSAHTAAAPSATPLPNAPVPTADALLQAAREIAEHGAEQSAPTEGRSKRTRHPSQVVRDLLTGVGSSSGRV
RGDGKIARGIQLPTRPDGNTSDVEGEREVSAMLAFEDALLHDDVDCAFAVREAIAAAEALEPSSLAEAKRRPDWPEWERG
ILEELATLSAACTWDLVDAPLHANIVGSKWVFRAKKDAAGNVVRHKARLVAQGFSQVPGVDYFDTFAPVATLGSIRTVLA
MAARHDLELHQVDIKGAYLNGELSDSEVIYMRQPPGFASTEFPHRVARLNKTLYGLKQSGRRWYQKLVQILADKLGFKVC
QVDQAVFFKTHGQSCTIVVVHVDDCTIAATSLALIEDLKAGLRQHVEITDLGELHWLLGIEVCRDRDARTISLSQRSYID
SIVRRFNFEELKPVSSPMEPHVKLSTAQSPQSAAEYAAMRHIPYREAVGSLMYASLGTRPDIAYAVSAVSRFSSNPGTTH
WDAVRRIYRYLGGTRNMELTYGGGQRALVGYSDADGNMAEDRRAISGYAFLIDGGAVSWSSKRQEVVSLSTTESEYVAAT
HATKEALWLKSFVLELFADDITPIPLLSDNQSAIALAKEHQYHARTKHIDVRFHFIRWVIEEGKMCLVYCPTDDMVADVL
TKALPSPKVKHFASELGLRSP
>Copia-4_NV#LTR/Copia 151-4038 [Nematostella vectensis]
MRDATDDGRKALKILREHYAGTGKPRVISLYTELTSLVKSPDESVTEYIIRAEKAATALKNAKETVTDSLLIAMVLKGLP
ESFKPFVVVITQSDKQQTFTEFKVALRSFEDTEKSRTTEMDSVMKTKNVSSEQGRQHKPRRKGDITCFKCNQQGHIARNC
TAPEKRRSEMWCSTCRSATHNDSACRRQRGRQTDKVNQVTEKEEDEEEDDHSFAFKVRKVKAGSSEADTGKPKSLLVDCG
AKSHIITDKSKFTRFDTEFNPSKHFIELANGTRAYNIALMRGDVEVTLLDVNGNPKKATLTKALFVPSYPQDIFSVQAAT
EKGACVTFQPDHAELKYKDGTIFNIEKDGRLYYLNVYDKNVKCDSVNYTRDIKEWHAILGHCNYDDILKLEAVVDGMKVS
GKGSVKSGDCSTCILGKLADSRNRKPDARAKAPLELVHTDLAGPVDPIARDGFRYCIVFTDDFSGAETVYFLKNKSDATR
ATERFLADMAPYGKVKTIRSDGGGEFISNEFESLLLRNGINHSKSCPNSPHQNGTAERHWRTLFEMGRCLLTQGNVSREF
WPYAVSAAAYIRNRCFNKRLQQTPYQAMTGRKPNLSNMRVFGSECFAYKQMKKKLDDRCTKGVFLGYDKGSPSYLVYIPE
ANKVRKYRVVKFPTKSVVEQQTQTDGLLPGNEEAMLFQHPTTGNHDPVNASIPCVDGPQEAPNEEVEGPTGEAEGEPCES
QTPPETRYPRRVRRPPIHLEEYVTEGEIESNQVMSSVDYCYKISSFPQTYQEAMESQESENWRGAMKEEMDSLLVNDTFS
LTNLPEGRTAVGGRWVYTIKEGADGDTFKARYVAKGYNQVRGIDFQETFAPTANLTSVRVLCQLAAQHNLILHQMDVKTA
YLNAPIDCDIYMDQAEGFEVPSSSGNERLVYKLNKSLYGLKQSGRNWNTVLHNCLVENQFVQNSVDHCVYKKEIGDKVVY
MLIWVDDIIIAASDMGIMLETKQILQERFRMKDLGRLSYFLGIEFEQGEGFVKMSQRKYVSKILERFQMSNCKPRATPSE
QKLELCDQSSVDPRLYREAVGSLIYAMTCTRPDICWVVTKLSQHLSNPQQSHWTAVKHVFRYLKGTMEYELCYRKSSEDL
SLLGYSDADWASSTDRRSTSGYCFSLNDTGPPFYWKSKKQTSVALSSCEAEYVALAYAVQESLYLTQLLSDLKESCQPVT
IFEDNQGAIALSKNPVNHQRAKQIDIRYHFIRSVQETGKLTIKYCPTTEMVADLMTKAATSKSYRSSSSIFLDRSQSYFC
NHFWFIISFISFFIL
>Copia-4_MLP#LTR/Copia 125-4936 via tfasty with Copia-75_MLP, 58.9% SW:1772, 1 stopcodon. [Melampsora larici-populina]
MNPTEATDAKSELISEETKSKVPRSESSQPFKQQNSIPFPTIEQKFKMTSIEQNDFSLSSYSSVVKLSTGTFNDWKLKLT
TILGGKRLSKYILKDLKAPDESDEAALDEFETNSSRALAAIHATIDAENFQVIRTCSSPREAFKLLCSHDDDAGGLSTAQ
LFSDIISLRMSHDDNLNDHINKFRKLHNDMLSNLASTPDNMISEPFFAIILIKSLTSDYTPLVQSLLTNFQSLTLARLYS
LLKIEATRNPTPGADTALVAGRNQSNPRSRPAQKKNSSNQQSTTRCSLGHTGHTNDQCRTKRWRAFLEYEKTKAPQPTSS
HAAQLTHSAPEADEDVSYWEEAFSASTSNTNPIICDTGATSHMFSDLSLLSDLQHIKPTRIGVASQDGAIWAKSKGTVRF
ESLILRDVLYSPELTGNLISIGRLCDDGYRASFDKNLGIITDPTGKIVLKMRRNPQTNRLWTPELKIISSLAYFSYTDAQ
KLADLWHKRLGHLHPDAVISFLRRFKSISLSRKDFVSCDACAMGKLIQSPSTHPFHRSPDLLNVVHSDLLGPISPSTKSG
FKYIITFIDDHSRFTLIYLLKSKNQAFESFKQYQALMEKKCGRKIHKLKSDRGGEYSSNEFIQYLKQEGIEIERGPAERP
TANSVSERFNRTVLGKIRSQLIQSGLPLHLWGELAKYAVLQINCSPHAALSHKTPMETFESLLPGHVHPFDIDRLKPFGS
LCFAVDRSQKSKVGALARRFIFVGLEEGARAARLWDKQTGRVLVTGDVVYREDVFPGIHPSFSPNVPEELILPEFFDSPP
LVQSTPTASIPPQPTQATNDRNVSRPSTPVRVDRTATPPPHRSSSPKLSSDHDSSNQPSPIYPKVRIPLSSSIHAPRLAV
ESPNRFEQLRDLYSTTPPQQHVQYREHVMLDTPSDPSIHSSAPSVNQSPTPHREQPEGNVLPISVDSSPISSVSSVRSPY
RTPSPVPLSSQQPVDQSVRQDASDATQDQPRLSPSAPLPDPIPQPAPESEPAASQPKQKPAPKAVPTRRSARTKTAPDRY
GFPATTNSTSVATTSTFGPMIITSKKSIIPDRWGFSATTGTDPDSPTYAQAMAGPDKQAWIHAMEEEYKSLMDHSVGKLV
DPPPNANILGGMWIFNKKRDEHNRVIRFKARWVVLGNHQIKGLDYDDTYASVGKIDSLRILLALSIAKSKGNRRTRRMKI
RQFDVVTAFLNSNMKDVVYARQVLGFEHPTQKLRVWLLIKSLYGTKQAARRWQQHFGATTAGFEIFPVSSDSAVYVLKCK
LGLLILHLHVDDSLVFCDNDELFFKFQTFINSKYKLKWTERPTLYLGIKLDIAEDGSYIKISQSHYIESCLERFAMVNCK
SAKTPLPQKLILAPGSIEEIEEAKDIPYQELVGCLQWISACTRPDISYAVSQLSKYNSAWTVSHWMAAKHVLRYLRGTQD
LTITYSGGTDEPQAYSDSDFSQCSLTRKSVTGYVITVSNGAVCWKSQRQSIVALSTSEAExIAATECSKHMAWVRSFYFD
IMHQLEGPTPFYIDNTSAIFTATGDGLKSKSKHIDRRFHYIRDLIQSNHLNIHHIPSEEMLADHLTKPLGPQALNHALKL
NHLN
>Copia-5_EPa#LTR/Copia 60-4166 via tfasty with ATCopia45, 82.9% SW:4006, 3 frameshifts and 5 stopcodons. [Eutrema parvulum]
MGDNNTPPRTKDLGSPSIHCPMLTSTNYTVWEMCMKVTLRVSEVWDTIQPGSGDVKKNDVATALLFQSIPEMLILQIGEQ
NSAKNLWEAIKSRHQGADRVKEARLQTLKAELDRLTMGDTDSVDEFAGKLSGLAAQSASLGETLDETKLVKKFLSGLPRD
KFIHIVASLEQVLDLNTTRFEDIVGRIKAYEERVRKETRYEDQGKLMFSNTNNRGGYGGFxGGTMGRGATGRGSFGRGRG
RGRFxRSNQGGETSEKDQKKKDLSKIICWRCDKPGHYASKCPDKPMQHQEANLNETQEAEALYVHEVVFLNEDKVFPNNC
DTNNVSVSYLDNGASNHMTGNKEYFSSLDENIKGRVKFGDGWYVNIVGKGSIVFVSKMGEKRALKEIYYIPDLKHNIISL
GQATENGCEVKMKGNTLTLSDPYSRLLVQVLRSPNRLYKTPLHISFPKCLSIQEDEATWTWHAWLGHISVCVINNMVRKD
MVLGMPQVLREMNVCDACLAGKQTRHTFPIKATYRATQVLELVHGDLCGPISPPTLANNRYVFVLIDDFSRYMWTMLLKE
KSEAFDRFKRFKEFVEKQTGKLIKTFGTDRGGEFTSTDFNRFCEENGISRHLTAPYTPQQNGMVERRNRTLMEMTRSLLK
GMNIPNDMWGEAIRHSTYLINRVPTKALQSQTPYEMFWSKKPNIKHLRVFGCVAHVKITGPHLKKLDDRSKIVINLGTEP
GSKAYRLYDPLTRKVMVSRDVIFDEGKSWDWSSTTTQENGEPGMFKLSYGGVIEEGNKNENNQDHNNDDQEHDNQEEEEV
DVNVDEGENQGTQYQPIVTRYGRVINKPRYLDDYVLLADLESEKLLLTLDGEPESLIEAIKCREWVEAMKVELESITRNK
TWELVKKPDGVKPIGLKWIYKIKRKADGSLSKYKARLVAKGYVQQQGIDFExAFAPVARIETIRLLIALAATKGWEIHHL
DVKTAFLNGDLNEVVYVCQPEDFIKKGEENQVYRLHKALYGLRQAPRAWNVKLDHVLKKMSFEKCVKESSVYLKKTKDDI
LIVVIYVNDLFVTGSTWKVIDQSKKDMSREFEMSDLGKLTYYLSIEVIQGADGIMIKKEGYAQGILIDTEMGSCNLTHVP
MESNLKLSKAEHEPEIDATSYRKAIGCLRYLLHTRPDLTFAVGVLSRYMQSPRESHGQALKHLLRYVKGTTNLGLHFKRD
GSKRVIGYSDSSHNIDVDDGRSTSGHVFYFGSSPITWTSEKQSTVALSSCEAEFMATTEATKQAIWLKEFLKEISCIDEK
LILKIDNKSAIALTKNPVFHGRSKHILFKYHFILECVENEQIEVKHVSGVEQKADILTKPLARIKFKEMRSLIGVKxIKL
PGVxVRIKGE
>Copia-5_TA_env#LTR/Copia 8239-9948 60.4% sim to Copia-36_BD_env, SW:281, [Triticum aestivum]
MVVRPLCPRWSDPRVHGVHSGASPVSSLSSIPRQLLEHLYLFVSLMFVVFCCCCVSDSADKRSELRRKPTKAGSREFTLA
LRQPSERIGQGSELGRVRRAASKQPVIEASEDSEEEYDSQEDAHYENPADAEIEDEDDSADDVDEEEGKEHVLPGGRNVK
NLPLSKWTKPELWARRQDFPYVPNTDVGVDPRFKSDFQHRVFSELIMTKKNKFAPHKQINVEALRDNDHIYPGVYNALGR
LGLIPFVAFHHPYSEDLVMQFFATVYFHSDEARTMTWMSGTYECEASMAKFSDTIPYRFFAEEHPEYGRAQETGRDKDEI
AFAYKPDKAFTTGSIKHLKPTYDTMRHILRYTLNPKTGDSHNLRSSMLDIFVYLHDKKKVDVLDFMFFEIRQCVQENKSC
IYAPFIQALIESVCPARYIAKYRTSFPKRDANWLPAAPPPYVPPKKGRNPRPEDRATYTEGCSSYVRIPRSKGKQVATDA
SFTREEKKSLLKTVSNMFKMCQSIQCRQVKEINKGKLVRRQKKAERAAAGEEVGPGSEDNDSVATARSFPLEGWHFDDDD
DDASSAPPLV
>Copia-5_ST#LTR/Copia 48-4061 via tfasty with SHACOP21_MT, 77.0% SW:3121, 5 frameshifts and 3 stopcodons. [Solanum tuberosum]
MAVNGISSSSQQLMPIFTGEKYEFWSIKMKTLFKSQGVWDLVEAGFVEQSDSDEETEKLKEIKKKDAKALFLIQQAVHDT
IFSRIAAATTSSQAWKILKKEFQGSAKVITVKLQTYRRDFETLSMKSNESVQTYLSRVSSLVNQMKPYGEIISEETVVAK
VLRSLTSKFEHIVVAIEESHDLSEYTFDELMSSLQAHEERLLRSHEKNEEKVFQVKGESIHQKDKLEIFANRGRGRGGFR
GRGRGRGQGRNRDRGGSNEEKQAKTFLCNYCRKSGHKEAYCWQKQRDENNQASFVEENDDDSKLFMALYCEKETPNDFWF
LDSGCSNHMSGTRSLFKELDESKKSDVRLGDNKKIQVEGRGTVSIMTSQGNAKILEDVMFVPSLSHNLLSIGQLMISGYS
IFFDDGVCTIKNKKIxENHVLKVPMANNKMFPLDVSMVERCAMVASGDNETRLWHLRYGGHLNVNGLKLLSQKEMVFGLP
KVENLDFCESCVYGKxSKKCFPISKSWRASVCLELVHADLCGPMSVESLGGSRYFLLFTDDYSRMSWIYFLKFKSETFDN
FKKFKSFVERQSGCRLKTLRTDRGGEFMSKEFSSFCEENGIHRELTAPYTPEQNGVAERKNRTVVEMGRSMMEGRGVLKC
FWAEAVATAVYLLNISPTKAVFNQTPYEAWRGNKPKVSHLRVFGCIAYALINSQARRKLDEKCEKCIFVGYSTQSKAYKL
YNPVSGKITVNRNVVFNEDASWNFNSTNESSNIKLLPSDDIIDQEYVADPFLAGPSSTSSIAPTTSPILEKPSAEPIPLK
RSTRDRKQNPRYANNTSCTFALLVLDPILFEDAEKEDKWCKAMEEELMAIQKNQTWDLVNLPEGKKAIGLKWVFRTNYHA
DGSIxKHKARLVAKGYSQQQGIDFEETFSPVARFETVRTFLALAANLSWPVYQFDVKSAFLNGDLEEKVYVSQPEGFVVN
GKEDNVYRLKKALYGLKQAPRAWYFKIDSYFHENGFERSNNEPTLYVKREGKNDFLVVCLYVDDMIYMGSNESMITDFKD
CMMKNFEMSDLGLLHYFLGLEVKQGIEGIFLSQRKYATDLLKKFTMVNYKVAVTPMNINEKLCRDDGSEMANATYFRSLV
GGLNYLSHTRPDIAFSVGVISRFMHNPSKLHLGAAKRVLRYIAGTTKQLEIWYSKVTNFTLTGFTDSDYAGSIDDRKSTS
GFLFNLGSGAVSWSSKKQEVVALSTSEAEYIAATSAACQAVWLRRLVADFNQKPTGATEIFCDNISAIAMTKKPAFHSRT
KHIGIRYHYIRGLVSTGEITLKSCDTNEQAADIFTKSLPQAKHEFFKGQLGVCCFESRG
>Copia52-PTR#LTR/Copia 132-4646 [Populus trichocarpa]
MDLTKANLSNPFFTHHSDHPGLILISKPLNGDNYSTWKRAMTLALNSKNKLGFVNGSIRAPSEDNDPEEHAAWSRCNDMV
HSWIINTLNPEISDSVIYYSTAYEVWEDLHERFSQSNAPRIFEIQRDIACLRQEQLSVSTYYTKLKGLWDELASYNDTVH
GTQQEQQKLMQFLMGLNESYSAIRGQILLMNPLPSVRQAYSSISQEEKQRLLSSMHTGGDSSGSAAMAVRNSNNRSTEHL
SAGFGRSERFNNSYGPQGFRSQEKPAGNFSGGRRFQQDGRRPTFGRGRPYCTHCEEAGHWVQTCYQLHGYPAGHPKIKYG
SGSKRFNNNKHIANHVSTAENEQPVIGISQDQLKQLLSLLDNKTEGSSPHANAVTKPGLSKVTSRNWIIDSGATDHISSK
LFTEKHTKCSLPPVLMPSGQKADIVAKGSLPINSVYYLHNVLCVPTFKVDLLSVSRLTRDLNCSIIFFPYWCLLQDLATR
RMIGLGKQHNGLYYLVALATKQHTSKQTPTINQPTCNLITSSTNLWHNRLGHTSPSCLRFIAQNFLNFSIQSNNTCHVCP
LAKQSRLPFHSSVISSTKPFALIHCDIWGPYRHPSISGARFFLTIVDDFSRFTWIFLMRHKSETQSILKNFFRYVFTQFE
AHIKIFRSDNGGEFISLRTFFHNNGVIFQRSCVYTPQQNGVVKRKHRHILQVARALRFQAHLSTQFWGECALTATHIINR
LPSPVLSFKTPFELLFSKPPSFSHLRVFGCLAYATNVRITHKFAPRSIPSIFLGYPPGQKAYKLFDLSNEKIFTSRDVIF
HENIFPYAFTQPTPSSPPYNPGPIPLIHTDTTTFPFPPSSSPQPPLPTQIPLSTTHSSPPPTTLRTYTRRPKPINLDTHP
TDCSNTPSTIISAQTPPSTTSPSLEPGSIAPTPLSLEISPPITPAPTPLRRSSRHIGPPVKLRDYVCSHVFSGQSPSSPP
GLNQGTRYPLSNYVSYHRYTSPHHSFIAQISHTMEPKSYSEAAAHPEWQAAMLSELQALQQNGTWSLTSLPQGKTLIGCR
WVYKVKHRSDGSVERYKARLVAKGFTQLEGIDYQDTFSPTAKIVSVRCLLALAAARGWTLHQLDVHNAFLHGELSEEIYM
SPPPGLLRQGEEDLVCHLHKSLYGLKQASRQWFAKFSEAICSAGFKQSQADHSLFTRQRDKSFTALLIYVDDILITGNDL
DSIAMTKKFLHSHFHLKDLGPLKYFLGIEFSASKNGIFISQRKYALEIIEDAGLLGAAPIDTPMERGLKLSDKSDLLKDP
GRFRRLVGRLIYLTVSRPDITYAVHVLSRFMHQPRKLHMEAALRVVRYLKGAPGQGLFFPSHTDYKLRAYSDSDWAGCPL
TRRSTTGYCVFLGPSLISWRSKRQKTVSLSSAEAEYRAMTGACCELTWLRCLLRDLGLLHHEPALLHCDNKAALHIAANP
VFHERTRHIEMDCHYIRDKIQDGSVITRHVHSEHQLADIFTKPLGKDVFIPMIHKLGVQDIHSPT
>Copia36-PTR#LTR/Copia 36-3971 (2 stopcodons) [Populus trichocarpa]
MDNEASFSHISSPISNGENYQLWAVRMETYLEALDIWEAVEEYYEIPPLPTNPTMTQIKSHKERKTKKSKAKACLLAAVS
TTVFTRIMSLKSAKDVWDYLKEEYAGDERIRGMQSLNLIIEFELQRMKESETIKEYSEKLLGIVNKVRLLGTDFTDCRIV
EKILVTVPERYEASITTLENTKDLSKINLAELINALQAQEQRRLMRLDHVTEGALQAKYHDSKSHFRKNQVSSNSNTSAR
KFQNKGKFLKRNFPPCQHCNKTGHAPFKCWKRPDAKCSKCNQMGHEAIICRTIIQKQDVDAQVANQDDEDQMFVASCFSV
QTTSDHWLIDSGCTNHMTPDRSLFRTLQSTEVAKVRIGNGACIAVKGKGTIAITTKSGTKTISEVLYVPEIDQNLLSVGQ
LIEKRMKVVFENYFCYVFDAAGQLILQAKMKGKSFSFLPFEEEYSAFQTKLTDMEVWHKRLGHCHQxRMISMKKHDSVRG
VPQFTDFPSNCSACQFGKQSRKPFQKSTWRSTQKLQLIHTDVDGPLSTPSIKGSRYYILFIDDFSRMCWIFFMKYKSEVA
GIFFKFKKNVENISNYRIQVIRSDNGKEYTSSEFNLYCEEVGIDHQLTAPYTPEQNGVGERRNRYIMEMVRCMLHDKNLP
KDFWAEAASTAVFLQNRLPTKLLDEKTPFEAWYNYKPSLRFLKVFGSLCFVHIPQIKRDKLDKKAAPGIFVGYSGASKAY
KVYHPQTQKMVVTRDVHFQEEDQWDWGQSQMNNQPHEEEQWDWGHSQRNQQPADPLLDETFNDPPTRGTRSLEDVYQRSN
VALCEPEGYEEAKQSPEWQKAMQEKISMIEKNCTWELVDRPPGKNIIGVKWILRTKLNADSTINKHKARLVVKGYAQIYG
VDYSYTFAPVARMDTIRLLLVVAAQKNWKVFQLDVKSAFLNGILQEEIYVEQLAGFEIQGKEDKVYLLKKALYRLKQAPR
AWYGRIDDYLTGAGFQKSLSEATLYVKSINNDVIIISLYVDDLLVTWSNTEQVEHFKLNMMEVFEMTDLGLMSFFLGMEI
LxGKDEIFICQKKYSMEILKKFHMESCKPTTTPMNQKDKFSKEDGTAKVDEEKFRSLIGCLLYLTATRPDILHATSLLSR
FMHCPSEIHMRAAKRILRYIKGTCSYGVKFQKCQELKLHGFSDSDWGGSIDDMKSTSGFCFNLGSAIFSWSSKKQDTVAQ
STAEAEFIAATAAVNQALWLQKLLRDLHMEGEEATEISVDNQAAIAISHNPVFHGKTKHFNIKLYFLREVQKNGDVRLIY
CKSEEQLADLFTKPLPVNRFEFLRQKIGVYSS
>Copia-1_CCO#LTR/Copia 124-4470 57.8% sim to Copia-7_ADe, SW:1388, [Coprinopsis cinerea]
MSDQHSGTATYRLEPLNATNWMPWKRRMLAVLREHDLDKYVTGSAKTKPTLTPEGVSPAVTAADIEKWTTGEAKARTRLE
LAIGDSEMVHILGAETAGDIWDRLSQIKETKGRLGVLATRRALYRAQAVDGFDMVEHISKLRGYQSELALMENIVSDEDF
AMIIITSLPESWDGFTTSYLGSQSNAATLSAASIIPLLIDEDRRRRTRDGGSSNALQARFGGKESGGSGGRGGGSKATKE
CFNCKKKGHFKKDCWAKGGGMEGKGPQGRGRNRAHQATDSNVDINQAVSVAYMARLSDAPAPSKLVWYLDSGTTSHICTQ
RDAFTHYTPLHNSTIQGIGPTAAIVAGMGTVRLKFVLDGKTSIHEIRDVLHVPDAPNCLLSLSRFDDAGGSVNFANGMCN
LLDKDGRLVGKGRKTDRLYQLDARAELKQNRTFAATRRARTWDYWHRAFGHVGMSTLEKMHSSGAVTGFEVDESSVPSPT
CVPCVEAKFSHLPHPHKASGRSDTAGEGYHCDVWGPIKTESIWHNKYYISFTDDATRYVDVKFMKSKDAAFDLIAKHVAS
VETRFGKPPKWFRFDNGKELVNERTKELCALKGIEIHTTAPYSPAQNGVAERLNRTLLELVRANLIAKSVPAFLWDEAVS
HAVYIRNRVLVSALPDKTPYEAYHSKKPDVRHLREFGSDVWVLDESPGRSKLDPKANRMVFVGFIDGSRSIRYYDAARRS
VKVSRNFSFNDNLDDAWMESLGSGLEEETLIDTPVTPVSKSVEVDTRSGNSETTDQEAILRYTPTPAPQSPRSTSNSPGK
KSVPPVVDDNITPVPTPGYEGRTLRQRNTDIDYKLANNPDARKPADRNWKQRTKALKTARSTKDTNSSLEASDSDEYAFL
ARRVTIEEVEDVDAPRSSIPIPFTSLPPTPQSPPGLKSSPSPLARNIPIPSNVHEALSGAYAKEWEEAIKEELSSLQKMG
TWDLVDLPAGRNAIGNKWVFALKEDDHGRVVRWKARLVAQGFSQKPGIDFNVHETFAGVMRLDTFRTNTAMAAVNGWRMF
QLDVKSAYLNGRLDEELYMAQPPGFEDGSGRVCRLNRALYGLKQAGNVWNREFTSTMSELGFTQLRSDSCCFIRSSNGAT
TILLVWVDDIIGYTDSDEEEERLVKELSAKFEITHVGRPQILLGMKIAQDDTSGAITLSQSHYIDSMLARFGLTNANTVS
TPLDPNINLDYDQGPPPAADRRGSSLYATAIGSLLYAAMGTRPDITYAVHRLAQFTSHPEPKHWTAVKRVFRYLKGTKDF
ALTYGGLDFDLTPDIDIFCDADWASNADRKSISGYVCNIAGGAVAWSSKKQTTVALSTAEAEYVAATHAARQVLWFRSLF
SELGFPLPSTSTIFTDNQAAIAIAHHPEFHARTKHIDISLQFLRDHVKTGTLDTVYINTHDNLADIFTKALPRPAHEEFV
YRIGLLPLG
>Copia-1_ES#LTR/Copia 89-6367 via tfasty with Copia-13_ADe, 55.1% SW:957, 1 stopcodon. [Ectocarpus siliculosus]
MASRREDESRPAAEARQAAEDARIEELVNERVAARMKQLMEEKLAKKMAEMEVRHRAEQQRGGNEEQEAAHQQDPGRPTP
NPSADELADAIATAMAGRLQTSGDIGAVSHPATLRMTESRRIEPWDGVFKSGDSRQQKLLIFRSSMVARFAQEDVHEVVM
SNQDIPVGRQGISMTDLKTEYGEQKVAKAIVAWNVLITSISYMPILSEIVSDGSPSGGWRIFLKYYEPQAKAEKKRLLKE
YHGFAMHANEHPQEYFGRFSILRSRLASHGTVYPDNEANDHLVSALSSDYKIEKKLLDRTPDLTFEQIEDSVKEAHTDLV
RAREEEQKSGVGHAFVASGAPRGDGRVPNGSSGNGGGQDGKGDGRSRSDETRGDRRCHFHPWSNHTNAECYQQQREKERK
QRQQQRRQQSSQQQQQQPQQPQQQHPQQSQQQHPQQPQQQQYYHPRPQQQQQQQQQQQGGRGGGGWRGGPQHGPHGGRGA
QQRYGNSVPPRPQQQQWRPSHGHANVMHHEHGAPPYGGPANSSEYGGWEQPQPQYQQPPPDYTQQQQPYYPPPTPYYEQQ
QPPTQPPPPPTFQQQQHSTHAPPHSSPPGAAAPAPGSLHFLMARFVSAGEIVPSGVVASTERENGNGFALSAQNSLSHFG
REKFWADSGATNTFVSSSHHMFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQSGEHDFCVQMSDVYVVPGITF
NLFSLHHTQRRQRIVLDETGVHLFDGRLSFAYSDVGCSLWATRLPQNYTGSAVTYSPDAPPRVSAQASPPGVGTGLVAAN
PPFPQSAGAGATSSASASTGFQSVAAVGVVPASSGFQSVATAGVVPSTPGVQPTGSDGVVPSTPSVPSTTSGVVLPICAF
PSVEVDPIPTTIPDFQPVITAAVESSSIVPPPAVELTDYREIEINPLVSQDELPIMDMSMFLDVGLMDGKDKVPPGDFFP
DAHQFSASAEPPPLAFTVQHDDLEVLRGFLSECNEQQAVAPPSLSHALAIIAPGASPFSVGKSTPTIDINLFHASTGHVN
EFLMSETAKQQGVRLVGELQPCVGCVEAKGRRAPVPRRGTRAAVPFGKVHIDLTGPFTEAMDGSRYLIMFVDSASRWQRA
YGMRAKSDTLKYVKRFLADMNGMGTPGCFRMDNGGEFTGAAFIEFCDAAGIRREYTAPNTPKQNAVAESAIWRAMKGGHA
ARRHILSMAHVDLASVPNIGANGQRLWLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLTVVPFFQEGRMRVKRAT
KADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNVVWVNRRAGAPAPVPAIGGGSSVTAAPSPAAAVPAADAAPPP
PPRTWTYYPPAPATTAAPPPPPSIFTGSSAPSPISVAPSSAPPSTAATPPRSPPGLPPPPPKPASAAVPAPPHPPLSKRA
VKELGREDTRVHGRTRGDGVRFMDEQQKPPSPPSGGTALHHRLELLDMMDKDTLISSLATREAVDQGRRDLPPPPQPDPN
PGGRGSGGAVGAGGPVDSGGGGRPQMFATMFATREDVDAALRAERPPDKMPDLPHCMASDLREPKTFNEAMRSQHSELWN
DAIGREFFGLLDAGTFSPVxQPVENAINAKWVFNCKADEYGWPTKFKARLVARGDMQRASIDFGELFAPTVSVSSVRLLA
ALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHAHLTRCLLLLGFLQCLADA
CVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGRDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAA
EYGIEWGRSVPLLVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVR
RTSWMGITFERGVVTGISMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLF
LRQVWRSMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKE
SFALHRDFVMNLQ
>Copia-1_DYa#LTR/Copia 101-4017 via tfasty with Copia2, 1 frameshift and 1 stopcodon. [Drosophila yakuba]
MSGQGLCAIDKLDGENYAVWSVQMKSVLVHSGLWSLVCGRRVKQESDTAEQGAQFDELDEKALATILLCVKASEINLIKN
CASSKEAWDKLAAVYKPRGPARKITLFRKLLRLSLSESACVQNYINEFVDIVEKLKEIDMDISEDILTILMLSGLGKKFE
NFVVAIETREQLPTLSNLKVKIIEGGERQRVSSDETELCVQQAFVSYPSGKGDKKNRSAQKNSDAKKNKKCFRCGREGHF
IAQCKVKDKNDEIETSAKEKSFTMLASVNKNDVLTKTMWCLDSGATAHMCCERSWFADIKEHKEKILLAGENYIFSDGVG
TVAVKTKNGSVNLKNVLYVKNLQSNFISVAKAVDKGYKVIFHKHSAYIKNGQNEEVLQARKAGNLFVVDTPNNRCMYLCA
NDELWKWHYRYGHLNMASLKRMASNNMVNGLKSIKNVVDIDRITCETCAKGKICVKPFPKMAENRADKVLELVHSDICGP
MNKVSAGGARYFVTFIDDYSRYMFVYFLKTRDELLPTLKDFVAxSGEKLKAIRSDNGREYISHEFQKFLSENGIKRQLTV
PYTPQQNGVAERANRTLVEMARSMLIHSGVNEFLWGEAVRTAAYLRNRSETRSLKSQTPFELWSGKKPSISHLKIFGCKA
IALNKKHAGKFKPKGIECMMIGYSTTAKAYRLMRIGSNQVIESRDVVFLEETIGYPKNGNSENETALIDEIGVDCSQILA
VDNNKEGAEVLEEEQIDSEVSEADSSDVYASAKSDDSEEREIRGPGRPKKIKTGKPGRPRKQYNLLNMMKVQDVKVPITF
AEATQSEISQEWVASIQKEIGALEANQTWELQDLPEGKKAIGSKWVFGIKGDKDGNVMRFKSRLVAKGCAQQYGIDFFET
FSPVVRYSSVRLIISLAVEHNLFLHQMDVSTAYLNSELSEEVYMKQPDGFDDKHHGKVLRLKKSLYGLKQSGREWNAKLN
KVLQKLHFVPCASEPCVYTRNEKDNINIIAVYVDDLLIASSCKNDLIGIKESIGNEFKVVDSGQLNHFLGIEVEREGETG
SISIGHKTYIESMLHTWGMLDCKSAATPLEANFQVKCTDPNCKPVNEKDYQSLIGSLMYLAITTRPDIMHSVAKLAQRNV
NPHKEHEVAAKRILRYLKGTSNLKLHYQSTGKPIHGYVDADWANDTSDRKSYSGYVFINAAGPISWESKKQSLVALSSTE
AEYVALSIAAREAVFIKKFLKEMGFLIDHSILIFCDNQSALCLAKNPVLHNRSKHIDIKYHYVRELYSKKEIDVKYICTN
DMLSDILTKNLQKNKHLKCITEMNCF
>Copia34-PTR#LTR/Copia 80-4585 (1 stopcodon) [Populus trichocarpa]
MTNNETSSNLEAHTDFSRGNLSNPYFTHHSDHPGLVLISKPLNGDNYSTWKRAMTLALNSKNKLSFVNGSIKAPSEETDP
EGYAAWSRCNDMVHSWIINTLNPEISDSVIYYSTAHEVWEDLHDRFSQSNAPRMFEIQRDIACFRQEQLSVSVYYTKLKG
LWDELASYNDSLHGAQQDQQRLMQFLMGLNESYSAVRGQVLLMNPLPSVRQAYSFVSQEEKQRLLSSAHTINDSVNSAAM
AVQSNNSKFNDKGERSYHSFRSQDRLTDNFSGGRRFEQDRRRFGPRRGRPHCSHCGEPGHWVQTCYELHGYPAGHPKAKH
NSARRFNHNNKSAANHVSESFAKENGKSVVGISETQLKQLLSLLNDKGAESSSQAHAATTVTKPGLPKIASRSWIIDSGA
TDHISSSSQSFFQRDNNCSLPPVLLPSGETANIVAKGSLPLNSTYYLHDVLCVPTFKVDLMSVSRLTRGLNCSVTFFPYW
CILQDLATRRMIGLGKQRDGLYYLVAIATKKSMVQPSQPLHRPACNLTISSTDLWHKRLGHISPHRLSFIAQQFLNFSVQ
SSHVCPICPLAKQSRLPFNSSVISSIKPFEIIHCDIWGRYRHPSISGAYYFLTIVDDYTRFTWIFLMRHKTEAQSLIKRF
FSYVLTQFESPIKIFRSDNGGEFISLRSFFQDKGVIFQHSCVYTPQQNGVVERKHRHILQVARALKFQAQLPTQFWGECA
LTAVHIINRLPSSVLSFKTPFELLYSKPPSFSHIRVFGCLAYAINVHPSHKFDFRSMPSIFIGYPTGQKAYKLFDLSSKK
IFTSRDVRFHEHIFPYASAKPGFVQHPSPIEFGPIPLLTHATTSLYSSLQTSPPVTAPAPSCSPPFASSNPHPSSPQPPP
ILRTYTRRPRPSDPIPPAENTPPPEPAPPEPSWPSENPPPPEPAPLRRSSRHTAPPAKLNDFVCSNVSSNQSATLLPGPS
KGTRYPMANFVSYHRYTPAYHAFVAQLSTIPEPKSYAEAVVHPEWQQAMRSELDALQANGTWSLTSLPSGKTPIGCRWVY
KIKHHSDGSVERYKARLVAQGFTQMAGVDYHDTFSPTAKIISVRCLFALTAAHGWPLHxMDVHNAFLHGDLAEEIYMSLP
PGLRRQGEDHLVCRLHKSLYGLKQASRQWFAKFSEAMHSAGFIQSRADYSLFTRKQGMSFTVLLIYVDDILITGNDLVNI
AATKQFLHKHFHIKDLGDLKYFLGIEVSTSKNGIFISQRKYALEVIEDAGLSGAAPINTPMERGLKLSDKSTLLKDTNRY
RRLVGRLIYLTVSRPDITYAVHVLSRFMQQPRKLHMEAALRVVRYLKGAPGRGLFFSSKSDLKLRAYCDSDWAGCPLTRR
STTGYCVFLGPSLISWRSKRQKTVSLSSAEAEYRAMTGACCELTWLRCLLKDLGISHRESALLYCDNKAALHIAANPVFH
ERTRHIEMDCHYIRDKIQDGSITTKHVDSAHQLADVLTKPLGKEIFVPMVSKLGVQDIHSPT
>Copia11-NVi#LTR/Copia 72-4097  [Nasonia vitripennis]
MATDAIIRNVVKFDGKNFQQWKFLITAALQANDLLEVTNGESKRPGEAARGAAPEAVRETEQVIKAWIKNDAKARYLITA
AMEPEQMVSLLTCETSMEMWDRLLTIHEQKSASHKLLVSQRFHEYRMNPKDTVVQHVSKVQNLASQLLDLGENIPDIVVI
SKIIASLPTKYRHFRSAWSSVAPERQTIEYLQERLVEEESYRDAEDEESSALAVTTRRADKGEISSKQNREKKPRKSKKN
IKCYVCHEKGHYARECPSRSKPNNREQSENIALIAALESSTNREKGEIAKANADWEPSSRQKQEIMETDQQDVWFTDSGA
SAHISHRREWFVDYRLRRDGSTVVLGDDRECSVAGEGKVLVERMVDGTWQDAVIENVLHVPEMGRNLYSVGQATSKNIRI
CFEKDTVKFSRDQKVVAVGVKQSNHIYRMFLRVKPRKLEVNAVSLNVWHQRLGHLHERALKHITSKNIVKGVQLNDNEIF
FCDDCQFGKAHKLAFKQEVQRNLEPGEMFHSDVCGPMKETSLGGARYFLLFKDDATGYRRVFFLKHKADVYDNFVIFERE
VNNKFGRPMQILRTDNGKEFANKEMKKYLQSRGIRHEFTAPYTPEQNGKVERENRTVVECARTLMCAKNLPGFLWAEAVN
TAVYLLNRISTSTQKRNKTSYEMWEKKIPDVSHCRIWGSTTFKYEPKQLTTKFDSRSTKMVLVGYDSESSNYRLYDPEKK
KITVSRHVTFNENSDEGEATKMVADENIFMFNDEDGTPDPPQRDRAAREEDPEAADVDDAPENGEQAERREISPPRRPVQ
RDRRLCKRPNRYTADFCAVVVPNSFQEAVQGPNSASWREAIERELTAHRINGTWRLVPRTPGIKTIGSKWVFKAIPDGDA
GHHKKKARLCALGYMQKEGIDYTETFSPVVRYDSLRMLLSIIAHENLEMRSFDVSAAFLHGKLNEEIYMEVPQRIDHNEL
NTGGKDVVCKLDKALYGLKQAPRCWNNRFKQFLAKFNFRECDADHCIFVAMYDKYRVYLCLFVDDGLLACKSDAVLQMIL
TELKAEFSITTGDASYFVGLQISRNRARRSIFINQSVYVREIIERFRMSNAKAVSVPADPNVILQAAEEGEAMDGSVPYR
EAVGCLMFVAMVSRPDIMFAVGTLSKFLNRHNVAHWRAVKRVFAYLGGSVDLGIEYKYYLDRYEPVGYSDADYANDPDTR
RSTTGYVFCISGGAVTWSSQRQRLVTLSTTEAEYVAASSAAKELCWIRKMLHEIRYQCNSGSILWVDNQSAIKIAKNPEY
HKRTKHIDIRYHHIREKCMSGEIVIKYIPSENQKADILTKALPRERFAKMRESLGIIKDPDM
>Copia7_TP#LTR/Copia 796-4196 C term wised via estwise with ATCopia52 protein [Thalassiosira]
MVDSAGSVNIPDTTARGPVFVSEVSLNNDAVDVSGDTNLFAQALHDNVAVTIAYLGTKDRKPDTNHIELANRWGISPDKA
LRTTRVTTQRGVRHVTNPTLTRRFRSNDRQRRYNRIPHVMFSDTAFSKVKSSRGNTMSQVFATDFGWSRNYPMRQKSQAH
EALSVLFSREGVPNAIVTDDAKEMQKGKFAQKCRDADTDLRQLEPFTPWANAAEREIKELLRGAGRKLISSKCPKRFWDY
CLEFESYIRSHTAHDIFKLDGRVPEALVSGETPDISEYCDFAWYQWVMYRHGGNAKFPEEPFRLGRYLGPSIGVGPAQTA
RILIANGEVLDRSTFRSLTPAEIENEELSHERKAFRKSVEARWGPKATEADLEVDDLGLLPTPTNHSYFDDLQSADTFPD
LKEELPEIPTPEAEDNYVNAEIMLPRGDGFARGRVVKRKRGIDGEVIGRANSNPILDTRLYEVQFPGGEVTELTANVIAQ
SMYAQCDADGNEYLLLESFVDYRKESGALRMDEQEIVVRGRKSLRRSTKGWKICCQWKDNSTSWEKLSDLKESHPVQVAE
YAVAQGIAHEPAFNWWVTHVLRKRDRIVAAVKKRNVRYLKKTHKFGIELPKSVAEAYELDRRNGDTKWADAIAKEMKNVR
VAFRILPDGERVPQNYQFVHCHMIFDVKMEDLRHKARLVAGGHTTEAPATMTYASVVSRETVRIALLIAALNDLPVWTAD
IMNAYVTAPNQEKIWTNLGPEFGEDAGKKAIIVRALYGLKSAGASFRNHLGECMRALGYVPCLADPDLWIKPQTTKDGFE
YYSYILCYVDDILVIHHNPKKVMDKIHKYFPLKEGSVGEPDMYLGTKLKKTRLNNGDYAWAMSPSKYVQESVSNCVKHVK
EKLGQHFSVPHSAPNPFPIDYSPGEDVTEELGDDEATYFQQVIGVLRWMVEVGRIDINTEVSLLSQHLALPRVGHLQAAL
HIMAYLRNKHNSRMVFDATAPEIDEGQFLRQDWSKQYEGAKEAIPPNALTPRGLGVTMRMYVDSDHAGDKVSRRSRKGFL
IYLNMGLVQWLSKRQSTIETSFFxVEFVAMKHGIETCRGIRYKLRMIGVPIKGPTYVFGDNMSVIHNYSKVESELKKKCN
SVCYHAVRESVAMG
>Copia12-NVi#LTR/Copia 4161-7436 via tfasty with Copia1_XT, 1 stopcodon. Copia12-NVi appears to be an odd tandem duplicate (second coding region 8333-end continued by 1-3250.) [Nasonia vitripennis]
MFSWLKHRVKQENELDATDIELTKKIRNKIRKIFLKEIKKIVVLKNQVYENIRVKEEELKMTDSGCTDHIITNDKFFEKC
VDLKNPVDVKLPDGKMLKATKIGTVKTYFKNYYNQKYVDIKNVYYVKGIKQNLMSLAKITENYTVLATKDTAKLFNKSRE
LIAVANKKENLFYMKSFVSKRESNEMCVNSVKLTDKEKWHRALGHVNFQYLNKLVTNKLVEGLPEKIENVEMKWANCIES
KMANVPFENSRSKTTEILELIHTDLNGPHNTTGYGGEKYFLTFVDDYSKCTRIFCIKSKAETASCLKEFVNLVENKFNKK
VKKLLCDNGKEYLNKEIYDFVKSKGIELLPCPPYVHELNGVAERYNRSAMDMGRCLMREAKIHRRYWPEIIKTVAYLKNR
TIANTAENKTPFEIFFGKKPNVDNLKIYGSRVFVRVPETLRKSKWDDKAQLGVLVGYVENGYRVLVNGRIIHARHVQVVE
EKTQLICLEKLDDEKDRDLENSESENKGNEILENESKIDKYDVNSNRKNPLISTQTFGESRDNELNSDIAENENSNLKVQ
RKSNRKKSPVNRYGNPVTHFIYVNYIDANIPNTFEEALNSNEYKQWKIAMDSEINSLNKNNTWQIVERPKDKRVIDVKWV
YKKKNNNVYKARLVVRGFQQREYIENVYSPVGKMQTLKILLSYSCKNNLFIEQMDVETAFLNGNVTTEVYINEPKGYETG
DNKVCKLQKVLYGLRESPRAWYNCFNEYIEKLNFMRSNYDYCLYVNNTSKDPIYILVFVDDLLICCKDKDKINKVKASLM
QRFAMKDMGKISQYIGIDIDYSNNRSKMTLSQTKYIESLAIKYNLENAKLYNTPMESNLKLEQASEIDENIKYRNLIGEL
LYISTGTRPDISYSVNYLSRYQNCYNQTHYKYAMRILKYLYKTKDLKLTYCDNVNTEILDCMVDSDYAGDNVDRKSTTGF
VIRLFGNLIFWKTHKxSTVTKCSTFAEYTAMSEAVTEVLFVRNLLCESFDVNFENPINIYEDNSGAIAIAKYGNFTKNSK
HIEVQYHYINENYENGIIDIVKIDSNSNLADMLTKSLDKTKFIKNRQALNLA
>Copia30-PTR#LTR/Copia 80-4405 [Populus trichocarpa]
MTSSDSTTLPLFSSPQKIQSNSQPVSQRLEGHNYLPWSVQFQVFLRSHDLNGMIDGSEEPPTRTLPDHSSNPAYAIWFKK
DNCVLSWLLASISEKLVSTVFNLKTSKQVWDSLQARFSSTSRSRIALLKRQLQTLVQGNRPCSAFLEDAKQLADQLAAAG
KPVDDQDFITFLIGGLRPNFTPFITSYNFACRDKDLSLDDFQSELLSFETLLEASTTVQTHNFAFAAKTSHYPKRKPAII
PAKFQPTSALPPSRGTSRIQPHSDRVPSYDRPQCQICDKYGHAALDCFQRFNFSFQGRRPPSELAAMAAEANTTFEQHTW
YADSGANAHITANAADLTTLQPYNGMDTVQVGNGSGLMIHNTGSSLLNTSHNSFRLNNVLYCPQAASNLLSINQFCLDNN
CYFILTGTTFFVKENKTRRLLLQGLVENGLYPINGNKNCNKQFRCFTSKLGTKATRDQWHKRLGHPSNSTLNYLSSFLPI
KDSPRKSSVCSSCQLGKAKKLPFSDSQRQSARPLALIHTDVWISPVTSVGGCRYYVLFIDDFSRFTWMYPMRFKSDVFSI
FQQYKILVENLFSCTIQQLQSDNGGEYLSTEFQNFLADHGIFHRLTCPYTSPQNGIAERKHRHIQEMGLTLLAQACLPNC
YWVDAFFTSVYLINRLPTKVLNNITPYFVLHKTMPRYSDLRTFGCACYPYLRPYEKHKLAFRSKQCIFLGYSSQQKGYRC
LDFATGRVFISRHVVFDEDTFPYLDKSHSSTTSASNQSSGTTLSSNIVPLISHAPHFNFTPPVVITNSSATERLTYTESP
PLQPSAIATPITTPSDPSFCPVIPPVLPSLILPSSPNQTPIPTPSDPSLCPVIPPVLPSPILPSFPNHVSSTDPGSSPTM
SPVLPKQMVTRSQTGCLKPKEFPGFKTFYSTRHPLQAFSSIVIESEPTCFTKAVSNPHWKAAMGCEFDALLANNTWSLCP
RPSHTHVVRNKWVYKLKRHPDGSIDRYKARLVAKGFEQIPGIDYFDTFSPVVKPTTIRLILSLAVSFKWNIRQLDVSNAF
LHGILDEVVYMEQPKGYEDHTFPDHVCYLHKSIYGLKQAPRAWFTRLSQQLIDFGFSESKMDYSLFTYNSDTLRVFVLVY
VDDIIITGSDSQAVRYFIDQLQNVFPIKDLGELSFFLGVEAIRNQAGLHLRQTKYITDLLNSTYMLGARPLRCPSSSGSK
LSSTAGELLENPTEYRRVVGALQYCTITRPDISYSVNQLCQFMHSPCTLHWIAVKRVLRYLKGTIEFGLLYTPGTIAMHA
YCDSDWAGNPDDRRSTTGYGVFLGSNLISWCSKKQSVVSRSSTEAEYRSMAQTAAELYWLRMLLQELQITLSAAPSLWCD
NVSAIALASNPVFHSRTKHIEIDYHFVREKVVNHDIQIQHISTQDQIADVFTKSHTANRFCFLRDKLCVCLLPHSLRGGI
RA
>Copia14-NVi#LTR/Copia 168-4225 via tfasty with Copia5-NVi, 1 frameshift and 2 stopcodons.  [Nasonia vitripennis]
MSDISSQDLRNVTKFNGQNFQLWKFQMRVIFVSQGLIKIVEGAEVKPEDTEANAAARADWIKRDAKAMFILSSSMDYSQL
DYLITCTSANSMWEKLSSIHEQRSAANKLSLTTRFHEYKMTPSDSAAQHMAKVENLANQLKDVGETISDVMIMAKIIGTL
PSKYSPFISAWDSVPEADQTLTKLRERILREESRLxNVDDVTSALATTSFSKNKGKKDSSSNNGNQTKSKKDIICYFCKK
SGHIVKNCNERKNKKKKGNAPDDCKNPPKDGQDSTNFSTLVASSNREIRGTDRKQILCSSRDESWFRETSDDQLWILDSG
ASRHYSCRREWFSEFTPMRDEYVLLGDDTRVKVEGRGKVEILRLVNGQWLEGEINNVLYAPSLKKNLLSAGVCTALNYAV
VLAGDQACVYSKNNKLIVQGLKQRNNLTTMFIKSKCAEVNRVCIASTKLWHERLGHVSTSTIEKMVKCEAVSGISLDKEN
DFFCDDCPSGKQFKLPFKTHEKSAKVNPVDVVHTDLCGPMQTTSVSGARFFVLFKDESSGFRSVDFLKHKSDTYDALKNH
MLHVKNHFGKDVKIVRADNGTEYTDKRVKDFLSSQGIKILFSAPYTPEQNGRAEREMRTIVECARTMLLARGLPRRLWAE
AVNTAVYTLNRTIGAMSPTKTPYELWFNKKPDLSHMRIFGSDAYVLVPDVSRKKWDAKSVRLTLVGYENDSQNYRLFDSN
TGRITVSRNVLFNENSWKNAADGATSIPIWDDTLNYDNVQEQDERVIDGGDERVADDDNGREIGENAEPAVKVRGRRHNE
CGANAEAARDDQPQVERVRYDLRPRENIRSPNRLICQVAYDKLYETPENYRDALNCEDAPFWEKAIKEELDAHAKNKTWK
IVKKPEGKKLVGHKWVFRIKSTKETDQCRYKAxLCAQGFTQEAGVDYSETFSPVVRYESVRILLSIAAEEKLCSLHFDVS
TAYLNSKLNEDLYMRVPDGLNVDCKKFALKLEKAIYGLKQAGRCWNERFDTFIKSLDFVQSSADKCVYTGLFKRCKVYLA
LYVDDGLLLCRDQNVLNELVGVLMEEFDITVTNLNFFVGMEISQHDDCIFISQEAYINKILKRFEMLDANEVKTPADPSE
KLTYPIVKDGLKVPYRELVGSLLYLSVISRPDITYAVGVVSRYLDNYDESHWRAAKRILRYLKGTRSLGLLFCNNRANSG
LVGYSDADYAGDIATRRSTSGYVFLLNGNCVVWSSRRQSTVSLSTTEAEFIAASEATKEAIWLRKLLYDIGRQCVGPTIL
LVDNQSAIKLTRNPEFHRRSKHIDARYQFICEKQRDGLIRYVNTNEQCADVFTKALSFKKFNSMCSTINVTSL
>Copia-1_FCy_p1#LTR/Copia 113-2425 No matches yet. [Fragilariopsis cylindrus]
MAVTDKPTDTTSTTGGTGNALSAKEKEAKAAAAAAKNTANQKKKNHPSNASSKKNKQQQVAKSKFEGLASGTSPMKGIVV
ALANGNLLGQYRVLQNTMAGTAASEKAYGLDSSILELVAKVESDFVTSKSDPLKHSTVVTIYTKDATGADTTTPTGEKRL
VCFDPILKASMDSNYFIDVKIQKANWNNYERFSQAYYRTAIGNVEDVIITYCRADKRMALVETNKDLIGFLQILRSVCAQ
TNGIVKVDQEFQNLHTLHAAIAFKQAANVDDSTFSKQVQDRYKSAIFTCGKFAFGEVSLEKVLSALPTPTTFTAYLALKP
ADQVPIDKLVEERTVARLIVKNSLNKNLKTHLMTTYSTATGDCYPNTISDALALLSTFAVQPAKNTTTEDAIVSYHEASS
PDPVSSIKEEAEDDLSDPEPELTIEELPSDTETNQASVMATVIAEATKEDDDDRFFGASFAQLQDVDDIYDDNEPDFVTC
AHVVDRPGGRQGDSTDFDSNSDIDHAGDRHGNSSDWDTDEWNRELEENRNRPKTGKSPITINKAHCFETVVYLTAQRVKN
TGTVRIKSYDTDDDDVPLVSYEYDSPTPEHIIDYSDVVREKLKLSGIRNIAALDDLFEGCSVAEAARRLRQQLIDVNQNA
LHGDTVRYLKEETDRHHDHLRFYKARYDRMITEIGPDDERVVFPQAHVLLHHTVVAVSINQRRRKPNRWINKVTRKLVNC
GINTVELLESALKGHQLNNILHRHGLPKFHQMTVSGFHLILNTSDFHQGLS
>Copia-1_Trm#LTR/Copia 61-5109 61.8% sim to TTO1_NT, SW:1418, [Tremella mesenterica]
MSESRSHDRIVGLESIPKLISVSDYHKWKLAIENYLLVNGCLAIVQGTDVEPFRKYTHEFDDGGRPLEIKRTERAGSVMP
TSNEITGDKKPLTTREEDKWQEWRKRELRAQGAIMSTVDSGLLVDVRSHKTAYDMWQWLEKDMQLNTSEHRTDVERRLRN
LRLPSNTTAEKMTSHLQAFNMLWLEALDSGCKFGDNARTDWFLDSLSSDFKVVRTLFMNLPENAKTWAEIRRMYQSEIAD
RGRVMEAVQLTRSSQVNTTRIVRTGGSNRTNRTEEGTQGSEDWKKTVECHYCKKKGHIKAECRKKARDDRRGDKKRARIS
AAQATENVEDEPQGDDFWMASSASLVYEPSVQQSIVSNNLEPEFLLDSGATHHITPYRALLTNIEKLPGPVRFGLASDNT
TMEAVEKGEIYLILSSGKGLRLTDVYYVPNARQNLLSTGLLRKRGWQVDFMQQELRRQGVHVAMREDGVLNYVRFGSMVR
KTKPGVINTITSMGALQSEHNRLGHIGRKRILELARQGELRYSIEQLENDTWRTSDCSVCQERKAVRLSKDDTSPRGTRP
CEMIHSDISGPIKASGQGACYIITMYDDYSKVNRVITSADRKWVIHYLKEFVTKIERQLGGVVRFLRTDGGSEYMSETAR
QWYTSSGITHQVSPRYTPELNGVAERFNRTLKEMAASMLSSATLDNSYWDFAVRYASVMMMKTSESKDGVNSWFALTGRK
PSLAKSFAFGELVYVQIPRDVRGKSQLDINKGELARVLGQEEGMSGWVIRFEATGTIVVSRDVRSASEYTVPAPIVHERL
PAPIPIQPAPTPTPTVDVRPDPLPEPLPAPPRALTPPIEQPEQRTEEEPAAPEDAANEQPRDTLRPLSPPRRHSERIRER
GLNAQTTFAISEVMMISAMSGSATVPQTAREALHGHDASRWAEAMEKELSNIESKKTWEETVLPVGRRAIDSRWVFAIKH
DADGNVIKYKARLVAKGFSQQPGIDFEETYAPVSRMVSLRLLLTIAAAYDLELHQADVEGAYLNGKLQEEIYMRYPEAMV
RKPGCDVLRLKGSLYGLKQSARVWWIELGNALSKNGFVRLESDWGMYYKPSDGQQGPIIVLAYVDDLVIAARNKTTITKL
MSYLKSKWTMTEVGEMSQILGLKVVRDRTRKIIHLSQPAYIESVAKRFTAAQRSYTTPLPTRPETVLVNSHVLNTSTGYL
QVIGCLMWMAGATRPDICYAVRYLARSSAQPTQAHYDLALRVISYAAHSKDLGLVLGGAIHGLEGWVDADYAGCTETRRS
TTGYLFKFCHSTIQWQSRRQATVAQSTLDAEYTATAEAAREATWLRTLLSELGMRQGCTILHCDNQGAILLASNPGTHAR
SKHIDVKHHYIRNKVHDGELKLEYVQSELQNADFLTKVLSREKHRENCHRVNLKSMRHETFSVSSTFVLDSSSFAFDLDL
DMVDSRQTNKEYIVQNGFIAITGCDDCVRKHKTCIFLKREDARENGREHGGKALYKCSECTRSGQKCMVAGEDVSKTGGV
ERAGDIHPPAVVIATPAINTTPSVPATIPSIPTVPTLPTLPTINLSKRKAIVLYSPSPEPTELSEPTLSEPTSTEPAETF
TLEPLDQSVDRSDQSTDQSADQSSTSSEASTETSTSTIEPTAEVLERINHELTDLLNRPDLKHYGRLKKVIRDLRWIHLK
LSN
>Copia-1_Pru#LTR/Copia 259-4662  [Prunus persica]
MVTATQLQIVQSPITTLIPTVSTSVTVKLDDANYLTWNFQMQLLLEGHGLLGFVDGSRLCPPRFDEDSAVEGVETDAYAV
WKMHDRALMQLLIATLSSAAISYVIGCTSSHDMWVQLKDRFSMVTKARIFQMKSELQNIKKGADPVSQYLHKIKDARDHL
AAAGVSFDDDDIVILALNGLPPEYNTFRCMVRGRENVLSLKDFRSQLLAEEAILEHTCSATPFASAMMANNQSFQGTSLV
LADTSPSVPSSISSSHNGGVHGGLNGGVHSSSNGGSFSHNGGFQSGPNRGSFYRGRGRPRHQFSSSPRPYQAPPNSGPGI
LGSGTDIPTCQICNKKGHLAADCYQRHQQFTSPSSSVQCQICWKYGHTAIQCYHRGNFSYQGKPPSSNLTAMHADCSPSS
SAEQFWVADTGATAHMTSDLSQLSLATPFLGNETITTAGGSGLSISSVGSSSLNTPQCSFQLSKVLHVPKISQHLLSVHR
LCKDNNCRFICDAFGFWIQDKLTGSVLLKGLCRAGLYSIPFFPSQPHPTPAASLLKQHFCFLGHPVNTSLWHKRFGHPSN
IITTALLHQTQVPFSSDKVQSICHHCLEGKLAKLPFHYPAVKSVKPLEVIHSDVWGPSPTISVEGFKYYVSFVDECTRFT
WLFPMINKAEVYSIFVHFHAYLVTQFSASLKVFQSDGGGEYLSHKFQHFLLARGIIHHKSCPYTPEQNGLAERKHRHILE
TAITLLQTAHLPPKFWFHACATSVYLINRMPCKTLHLKSPYFLLFGSAPAITHLKVFGCACFPLLKPYNTNKLQPKTSTC
VFLGYAGQYKGYICFSLLTNRLFVTRHVLFDETMFPFTSVHPVSISSSPYLPSSSPPPSISFTNTVLSPLSSLSIASPSP
STFEANEPLTTSPSATHSATQSPLPVDPDFQPESLRVVLPLPSINLHPMTTRSKNGISKRKAFSASTSTDFSTIEPSSFK
AASQSPEWQSAMREEIEALHAQGTWDLVPLPAHKNLVGCKWVYRIKKNADGSIARHKARLVAKGFSQEEGIDYYETFSPV
VKPTTVRLVLALAAQFQWSLRQLDVKNAFLHGVLQEEVYMTQPQGFESKLYSSDFVCRLKKSLYGLKQAPRAWNERFTSF
LPSLGFQASTADPSLFLHHSSLGTVVLLLYVDDIILTGSNSSLIASVISALTQEFDMKDLGQLTYFLGLQISYQSAGLFV
SQTKYIKELLGKVDLQDSKPCPTPCLPYHRLLKDDGKPYSHPEQYRSIVGALQYLTFTRPDIAFSVNQACQFMHNPMESH
VVAVKRILRYLKGTIDFGIWFKPGLLHLHAYSDADWAGDPNDRRSVSGFIVYLGSSPISWASKKQHTVSRSSTEAEYRAL
AITAAELAWIRQLFCDLHVPLHVPPLIHCDNISAIALSSNPVFHSRMKHLQIDYHFVRERVIRGDLLVQHVSSAEQFADI
LTKGLSIPLFQHHCSNLMLGSSKHEIEG
>Copia-2_Adi#LTR/Copia 18-3692 via tfasty with Copia3_XT, 62.1% SW:1842, 4 frameshifts and 3 stopcodons. [Acropora digitifera]
MELLLFNAVLPWNMSSLSETIKIEKLNGKNYQSWKYNIKLILMERGLWGFTQEGQEAPPEETATAAVKNAFRLRSDKAYS
LIALNVEKGLQVHISSVTNPLEAWKILQKQFAFVSVTQIVRINHKVYAASMKEDTDLMQNLTHMTYLAEQLREMNEEICS
KKFATVVLGSLPESYDNFLTSLNARNADDLDQENVKGLLIEEYMKRVEKNEKEKSADNALFINRGRNFNRGRHQARSGSR
GTNSARGARFPNFNPIKGSQPHSDGREKHKGIYMLxMxPAVWHCRLGHLNYTYVNQLMKKEMVDGMNYASGTQTQKECEA
CVLGKMQKKPFPKQSQHRATRPYEIVHSDVCGPMQVESKGGSRYMLTFTDDYSRYTTVYFIKSENEVLSKFMEYVNSVEK
LTGRHITKLNILSEEDVKVLRSDNGGEYTSNSFAKCCTEKGISHQFTVPYCPQQNAERMNRTIMEGARSMLYHAKLPLEF
WAEACNTAVYLHNRSPKHSKDQTPFECLFGRRPDISQLQVFGCVSYVHISDNQRRKLDVKAHKAIFVGYPPGVKGYKLYD
LEKKKFAISRDVxFFEDNFDHFKDGPPVDMKSIFPDMNEGRESVPVFLLNEEPAVPEQVQPPALKNEEHVISENVKPSAL
RDVKSAIPQNVEAMGAHNEEAPVKRTYKDKFMEEVRNLGPVRQRRKPIRFRDCDDDDDDCLLVNSVMEEPKTVHEALNGE
QSSRWREAMESEYSSLLKNDTWNLVPPPEGKNILGSRWVLKVKHDENGSVNRFKPRLVVQGYSQVKGVDYDEVFLPVAQN
TSVRSLLALANAHDLEIHQMDVKTAVLNGSLDCEIYMSQPEGFFDPDRPNHVCKLKKSIYGLKQSARCWNTTLDEYLKSA
GYHKSNADGRICVKSVKEANDRISFVILGVYIDDIIPVSNNPVLLKAEKAALCERFEMIDQGDHYLLGMSIKRDRECRTR
TISQANYVERVLRKFGMENCKPVSTPLDPGRKFRQLSQGDEPFNVQTYQQAIGCLTYMSTATRPDIAAAVGVLSQYMSGP
SKEHWIGVKRGLRYLKGTLMYGLKFYAHEEEPELFGYSDADWAGDVDTRRSTSGYVFQIRSRTISWSGKKQATVAKSSTE
AEYVALSSATQEAVWLRSLMGDLGRQVDAPTIIYEDNQGAIEPKYHNRTKHIDICHHLVHERVISNEIQVIYCPTGDMIA
DIMTKGLAKISFEKLRDLLGVHDIM
>Copia-2_DGri#LTR/Copia 64-4108 via tfasty with Copia-6_DWil, 73.6% SW:2798, 2 frameshifts. [Drosophila grimshawi]
MAGAFIKIEPLCAENYDTWKLQMSAILVKNELWQYVDGAKICPENVTDQAVWKTYDEKARADILLSISPSELAIIEDCNS
AKEYWLKLQETFQSKGPVRKASLLKRVALSRMNEGLDARQHVNEFFDAVKKLKEIGVAIGNDLLVILLLYSLPDSYEMFR
CAMEARDDLPHPDVLRVKILEESEARENKENREEQNAMFANRRKDVERNSKERKSDKVQREDRKCFSCGKVGHFARNCRS
NPKKNMKRNTKEQNSAGTAENGELSLNALEMAFSADEKNGLWCLDSGCTAHMSSNKSMFTDIAKVEKTLHLANNKTTRIS
GIGNAKIAVKKQQQRVDLTLKDVFYVSDLRQNLMSVSKITDNGFEVHFRKNEALVMKNNEVWLRAQRYGNLYYLNGGEHQ
VNSAMYGGQNDLDLWHYRMGHLNESDLKNMAKSGKAYGMKMCQNGKMSKCEICISEKQTASIYKSGNEKRTTELLEIVHS
DVCGPMRTQSLGGCKYFATFIDDYSRYCEVHFLKQKSELFEAFKVYKATAENFTGKKIKILQSDNGTEYCNKEFDKYMKV
NGIQTTPHTPQQNGLAERKNRTLVEMARCMMKQSGVPPSFWAEAVNAACYIRNRCVTRGLSGEIPHTYWTKKIPTVSHLR
IFGTKAYALIKGSNKGKFESRSEECILVGYSNTSKAYRLYLPEKRKVIVSKDVKFLNVPGFKSEYAEFYERDQNSNGGFD
INITSKPCDGSTSDDNSSVERPKQKLVEQQRGRGRPKIERTGQRGRPRIKYNQPQAQVTSNDEQSSSSETFEECEIAYMA
ATDDPTTLKEAKSHKDSVSWTRAIEDEFLAQVHNGTWEIVERPKDRKIIGCKMVFRTKDNGTVSGKKKVRLVAKGYAQRP
GEDFHETYSPVARFTSVRLLVAMAAELDMEIHQMDVVTAYLNGELEESVYMEVPESFNDFMEKLESGKSIGTKHDSLRAE
YMKTTAEWRASLSSMRSPVCLLKKALYGLRQSGLRWYCRLTTKLQEVGLEPTKQDPCLFVKRQGKKILLVSIYVDDLLLA
SNHPDWLHQTKEILGDAFEMKNLGPVTTCLGIEFKQDLKEHRIFLAQEKYIDAILKRFGMTECKPALTPIEAKCTLKRTE
AADEAEMRKYPYQNLIGSLMFLSVTTRPDIAYAVNFMSQFNSCYNAEHWKTAKRILRYLSGTKKLGLLFKRTGEDLYGVV
DADWGANLTDRRSYSGQAFILAGAAISWEARKQRTVALSSTESEYLAMSEATKEALYLKAILNRIGRRCDSVLLLNDNQS
AQKLVKGFGFHPRTKHIDVRHHFIQQKHQSGDIQVGYMQTEQMPADVLTKGLSSAKHHGCISSLGVTSI
>Copia-2_CCO#LTR/Copia 111-4321 via tfasty with PCretro3, 64.7% SW:2063, 3 frameshifts. [Coprinopsis cinerea]
MPEEYTGGYRMELLKASNWLPWKQRMLAVLRDLGLEKYVLQDAPGSEKVAAGKSDELTTEERVSRTAWEQGDAKARTRIE
LAVGDSEMIHISGATSARQMWKQLTQVKESKGKIGILALRRQLFRAMAEEGFDMVEHVSHLRQLQAQLHNLGNLISDDDF
LMILITSLPESWDSYTSADLGANGNSPTISSFELVAILIEEERRRKGRNDGVGTTLQAGRGRGGNGKAGKSDKECYNCKK
KGHIKSECWAKGGGREGQGPRGRRGPNRANQASEINSTLNEVAYIAQFRALSSRDFSKSDWYLDSGTTSHICTIRNAFID
YQPLTNATLDGVGPTPAIVEGRGTIALNFELDGGLMRHQLSNVLYVPQAPNCLLSATRLDAAGGTVEIGGGKCTMRNKDG
RIIGFGVKENGLYKLKARAEESRKGKAHLASAPKLTWDQWHRRYGHISVTALERLNREQLVHGLDIDGASIPSRSCEACI
EAKQTRKSFPKEAEHRSKIPGERFMGDIWGPARTISAGKFKYYIAFTDDATRYTTTLFIREKSEAFDRIKGHIAWLKKMG
RSPRFVRFDNAKDLINSKLEALCREEGIEIEPTAPYSSSQNGVAERFNRTVLELARAMLIDSELPAFLWDEAVAHATYLR
NRSPTRALNYMTPYEAWHGKKPGVAHLRPFGCNVWVLDESENRSKLAPKSKQMKLVGFNDGSKLIRYYDPQKRNVKVSRN
FAFNENDELKELEVVEIPGMRTEGESTSDSPVSQTQEQPKTEPSSPILPLIETTPSPSISGSANTTDDEDKTIRRPLRAR
RNETDYKKLGNPDARTPGLRFTPTPMRSVSPSPTISRPTESSKAKAKSKETANIALAAIGEPSERETAFISQFSEPDLPQ
NVEEALQGPESGRWKEAMDEELKTLKEMGTWELGELPEGRTTVGSKWVFTKKRNEKGEVTKHKARLVAQGFSQKPGQDYQ
YDGTFAPVMRFETLRTVLGTSAIRNLKLRQFDVKGAYLHGRLKESIFMRQPPGFDDGTGRVCVLKRSLYGLKQAGNVWNH
ETQHPSSRISTSNNSQSDYCCYIRYQDDDFTILLVWVDDIIAAYDYRRLNDQIESELAQHFEIKSLGQPSLIVGLQIQQD
DHYISLSQSHYIDTLLKRFGLENANPVSTPIDPNVKLDAFDSKDGNSLGEEVDPRISSGYATMIGSLMYLALGTRPEICY
AVNRLAQYTSRPRAVHFTALKRIFRYLKGTKHFALIFGGLDDEEMTEDLHIYTDADWANGPDRKSISGYVITLAGGAIAW
SSKKQNTVALSTAEAEYVATTHAAKQVLWHRHLLEELEFFPPETSTIFSDNQAAIAISRHPEFHPRTKHIDLAYHFLRDL
VANNTLEIVYVRTDLNLADLFTKGLPRSRHQDLTYEIGVISRKG
>Copia-1_PPM#LTR/Copia 189-4324 via tfasty with Copia-3_PSH, 69.5% SW:3167, 1 frameshift. [Postia placenta]
MSHHSSSPSFPKLNASNYKSWAGDMAAWLRSAGLWRLVSGAYLKPEAKDPKAPTEAEATLLEKWEVQEAKAAGWLYLMVE
ADQKVHFSNIDSDPVAMWAALKGVHQRPHAAGRWNAWEALLSIRKSDSESLQAVINRVEDAMQQCKNLRPDKYTLDDLDS
ELTVMAMILALPREDFALLRTQLLNGDLKKATVIQAFVTEDAQRRHDSTIASQSALAVTSSSSGPCDFCGASGHSQPQCY
SFQKAQKQAKERRATRGKGKAATAQEKPAEPAQESAANASALSSHSLEPSSPSTPLQLDADFTWNADTGATSHMTPHRHW
LRNYKPLRLPVKLADNKVVYSAGVGSVVFRPRVKGAFVQSVEFSRVLHVPDLRSNLLSCLHLARNKGFSITISSDAMAFY
QSGTLRFVTPIDHNNAAYLDGEVEPLVEASARIAATLPLDLNLWHRRLAHNNYADVQKLVRDELVTGLTLSSKQQPDPVC
EPCLAGKMRANPFPPSSHVSTMPLELIHSDVHGPLPVCTHSGYRYWITFIDDYSRFRVVILLKAKSEAFAAFKRFKAYAE
NQLGVKIKALQDDKGGEYMFSEFIAFTDSCGIVRRHTVRNRPQQNGVAERANGVMSDTATAMLAESSLPPSFWGEAVAAM
VHVWNRLPTAVRPGTTPYELWHKGKPSVAHLRVWGCTAYVHIQKDQRKGLSPHMQKCVFIGYPDGYKGWKFYCPDTRKVV
ISERAEFDERFFPGLRRTSASLSTPIVDPPTSEPVPLFVPALDQGGDNDSVPAAIPQALIAPIPAAAPLPVAPVPVQAPA
PPAPIVPPAPQAAHQPPPEADDLNLPIAIRRGRRHAPVPAPAPKREDSPDPLDLFAEEADFVEVQFAGLAAGADPHNFRE
AMRSPDAKLWQTACNDEILSLIANHTWDAVPLPAGKKAIGCGWVFKVKHNADGSIERYKARLVAKGYSQRPGFDYTEVFA
PTSRPAALRLVLALTAIEDLELHSVDISSAFLQGDLDEEIYMQQPEGFAQGPPGTVLRLGRPLYGLKQAGRMWNKKLHQV
LTSMGFKRLESDRSVYIYLRDEVRIIIPVHVDDLTLASTSRAAIDKTVEELSQHFKLRNLGPTTFLLGIEITRDRKKRTM
FLSQRQYILDMLEQYGLTSCKAVLTPMEPGLRLSKQQACQTDEDSLMYLAITTRPDIQYAVSCLARFNSCPGPAHWATVK
HLFRYLQGTKDHKLVYRPDDLGAPFVTFTDSAHGDCPDSGRSTSGYLVKVGSGAISWSSKLQSIVALSTTEAEYVAAVDA
GKEILWMRNLMAEFGYTVDAPSPLQMDNQSSINVSKNPEHHGRMKHLDLRTFWLRDTVEAGRIKPCYIPTADMLADCLTK
PLSAPKVAFCRTGMGIEVS
>Copia-1_GM#LTR/Copia 47-4147 via tfasty with Copia-90_VVi, 65.9% SW:2717, 4 stopcodons. [Glycine max]
MTSLSLNISNFITLRLTPTNYPLWREQALALAENxDLVGHLTNDDPASPQYTTPNSNDTTNTKNFVPKLTDEFIAWRKTD
RLLRGWIIGTLSKEALGLVVGLDTAHAVWIALKDSYAEDLQEREFTLRQQITYLRKEDDQSIGEHIRTFKGLCDNLATIR
KLVPDKEKVFYLLEQQQSRQFSPQHQRNSQTFTSTGRGFQAQQPMNQNKSQTFMSSQQRRPPPPGQRRMTPAEREQYQNE
KCQYCDKMGHIDKICWWVSKKPTQSDNIPQALAALTLDNTIAEKEWTSDTGASNHMTGKANILSNIQQYSGTDFVLIGDG
SSLPIHGIGDTFIKQKNITLPLHDVLLVPNFTKKLLSISQLTRQFPVNCEFSNVDFCVKExETGKPIITGRRKGDLYVLS
PRPESYFYNRFKSGSADIWHQRLGHPQIKALQLLKNKRLIDVVGTLKSEHLCDSCQLGKLTKLPFSSSEHSSSSIFEKIH
CDLWGPAPILSISKFKYYACLVDDFSKYTWIIPLQHKSDFVNAYLSFKQYVKKQFNKEIKVFHFDGGGEFINSKLSTHFH
LTGVIHQVSCPYTPEQTGMVEKRHRVIRELGITMLFHSGAPLCLWVEAFTIVVFLINRLTSSSLNFETLYFVLHGTHPNY
SSLRIFGSKCFPYTWDTRRNKFDPKTFPCVFVGYSDIHKGYKCFHPSSKKFFISRHVVFDESFFPYKTNRHHTISSPTLH
VVSIFDSWLPHTNSSSCADLTAITTVSASAPPCSNPLMQSPALQLPIASFGQPEQPSLPEHENLESQHSPIESNLELRPP
TSIQPLESASSTQTQLPQVVPTHPMVTRSQHGITKPNPKYALITMSSPDIPRNPYNIRSALAHPGWKAAMCEELKALHKN
KTWELVPRTRDLHVIGSKWVFKxKIKPNGSLDWLKTCLVAKGYHQVNGVDYTETFSPVIKPGTIRLIITIALVKNWPIRQ
LDVKNAFLHGLLFENIYMEQPPSMADPQFPNHVCKLQKALYGLKQAPRAWFDRFSSFLLKYGFFCSKADPSLFIWHSNIG
SIILLLYVDDILLTGSTTTLVSDFIQLLQSEFSMKDLGPLHHFLGIEILQTTDGLHLSQSHYALTILERANMVDCKPKST
PLEAKMKITSNTTPLDDPSYFRGLVGSLQYLTFTRPDISYSVNFVSQFMNSPTIVHLQMAHRILRYVKGTIDVGLHFTSH
TTLDLFAFSDADWAGCPTTRCSITGYCIYLGGNLISWCAKKQPTVSxSSTEAEYRSMANTAAELTWLTFLLQDLRIPLLY
CDNLSALHMTINPVFHARSKHIELDYHYVRERVALGHLVTHHIPTHDQVADLFTKPVSKATLMHFQTKLCLQPRPRLRED
INNNQLL
>Copia-1_GA#LTR/Copia 102-4102 via tfasty with Copia-3_GA, 85.4% SW:4404, 1 frameshift and 2 stopcodons. [Gasterosteus aculeatus]
MAEQRRRLPRLTFDGDETKYELWETKMLGHFHLSGLKDTVLKEPVSEAEIAADEKKNADAYAELILLLDDKSLSLVMRDA
PNNGRKALAILREYYAGRGKPRIINLYTTLTSLLKANDxSVMDYIIRAETAITALRNAGETLGDGLLVAMVLKGLPESFK
PFAIHVAHADDNITFTEFKTKLRSFEETEKIKAAESSDSVMKTQGKTGRRLAKTSARGWIKDDAELMCFKCGTKGHRAKE
CRQKTWCSNCRSDTHKDATCRRKDKDSKSTKDGASKASEDAEDYMFKMRDGENDSQRQPPCNIQQRGLMVDTGATSHIIT
DITMFKSFDCAFRPETHSVELADGTRCSGIAQRRGNAEVSLIDSGGQRRKTVLKDALFVPSYPQSIFSVKAATTSGATVV
FKEDKDALIARDGTRFNIHVYGRLYFLHTEAESNDKCNACHDIQTWHEILGHCNYDDVFKLQNVVEGMQIKGKAGRPEQE
CEVCNSKFAQTRNRDPDTRAKAPLQMVHTDLAGPVATESVDGYKYVQSFTDDYSSAVFVYFLRKKSDTVQATEKFLADVS
PYGKVKCIRSDNGTEFTSGDFQALLRKNNIRHETSAPYSPHQNGTAERGWRTLFEMGRCMLVETALPKQLWPYAVQTAAI
VRNRCFSRRTGQTPYELLTDKKPNVSKMQKFGSVCYTYKQGKGKLDSRSDMGRFVGYDKNSPAYLVYYPDTNKVQKHRLV
KFVSKAAVEKQTQTDEPDPSDDSDSVRPLTNETTQSRSTENAQEPNARAQQSVTSDEPESRRYPARERRTPSYLDDFVTE
DSDGDGVHITVDYCCRAVCGIPQTYGGAMESANSKGWVRAMDEEIQSLNENKTFTPTTLPIGKKTVGGRWVYSIKTDADG
KDKYKARFVAKGYSQKLGVDYGETFSPTADLTSVRVVLQKAAQESLLLHQMDVKTAYLHAPIDYEIYINPPEGYQEKEGI
VYKLEKLLYGLKQSGRNWNKVLHDCLTVNGFTQNPADHCVYAEESKEGKVIIIIWVDDLIIAASDEERLKSVKEMLAEKF
KMKDLGKLKHFLGIDFSQSDDCVKMSQEKYTNKILQRFDMQDCRPRETPCEQKLEYTEGAVKMEDVRMYREAVGSLIYLT
VCTRPDLSFVVSRLSQFFAEPTEEQWITVKHVLRYLKGTAEKGLSFRRNNSEELGIQAYSDADWAADTSDRRSTTGYCVS
LSQNSSLISWKTRKQPTVALSTCEAEYMALASTIQECLYLEQLLEGIDNYEYTQTVVHEDNQGTIALAKNPVNRRRCKHI
DIKYHFIRSTVNEGRVTLMYCSTDNMIADVMTKPVNKLKLKKFAGALFGDxYVY
>Copia-1_Mad#LTR/Copia 728-4222 [Malus x domestica]
MAVWTCDSANTGNDGKALKVSASVTNNTWIIDSGATEHMTCDSRQVQTLKPSTKTVVSVANGNPAPVIGEGTVSLSDTLS
LDTVLVVPSLDYNLLSVAQITVVLHCLVIFWPSFCVFKDIRTRKTIGYGIRKGKLYYLELTSNSSRMLTQALAVEGNPGD
RNKASEVWLWHRRLGHASFGYLRRLFPSLFVKHDVSSFKCGVCELAKSHRASFPSSLNKSSVPFMIIHSDVWGPSKTATF
GGAHWFVTFIDDCTRMTWVCLMKSKGEVTSLFQQFYKMVQVQYKSQIQVLRSDNGGEYVNSELRAFLDHHGIVHQTTCPY
TPQQNGVAERKNRQLLEVVRASLLEARLPLSYWGEALTSAAYLINRVPSRSVDFQTPLQALSSHVDAPAVPNLPPHVFGC
VAFVHLHKQQRSKLEPRALRCVFVGYASRQKGYRCYHPPTNKLFVTMDVAFHENDMYFANPESSLQGENQKEVQTLDYTI
PDIDRVNDLDLSGDVLEISGDHSHENNDVNELELSGNVLETSGDHSHGNNVENLERDESTSPDNSLPDSSLPVSSPPDSP
VSPATSQSILSPNNHNQSSSIPDAPPPRRLPDRVNRGIPKLTYEADPKCKTRYPVSKPNPESNVLYPLSNYVSTSHLSES
NKSFVHQLSTVSIPNSVQEALTDPRWQVAMNEELKSLKKNATWEITDLPAGKKPVGCKWVYTVKYKADGTVDRFKARLVA
KGYTQKYGIDYTDTFAPVAKINTVRVLLSLAANLNWPLQQFDVKNAFLHGDLTEEIYMDLPPGCNAPDKYKRKVCRLKKS
LYGLKQSPRAWFGRFTKSMRAFGYRQSNSDHTLFLKRQNGKLTALIVYVDDMVVTGNDPEERAALQRYLSTEFEMKDLGS
LKYFLGIEVSRSSSGIFLSQRKYIIDLLHETGMSACQPVATPLEEGLKLSVDPNQVPVDKGRYQRLVGRLMYLAHTRPDL
AYALSVVSQYMHDPGEQHMNAVMRILRYLKGSPGKGILFKRNNHFSVEGYTDADWAGSIDDRRSTSGYFTFVGGNLVTWR
SKKQNVVARSSAEAEYRGMALGICEILWLKLLLSDLGIQHDQPMKLFCDNKAARDIAHNPVQHDRTKHVEVDRFFIKEKL
EGKIIEVPAIRTEDQLADILTKAVSSHKFSSFLHKLGMSDIYAPT
>Copia-1_PIT#LTR/Copia 51-4973 via tfasty with Copia3_XT, 63.7% SW:1489, 1 stopcodon. [Phytophthora infestans]
MSVTGRLDFTDLDSPQAMPPIARAERAHRRNLGFVHTELHKAVRERVREQEAFPTPPRRPRRNNTTGSIADATSPGIAAK
SSPSTHSTQLSDAEMIVVLTARLEESRARMDDAMEVIRMQQGMLDKKNRAEQRLAALQAAVRKQHYESHELEEEVGEPKQ
SERDDESSSGWGQQASAMSQMTSLDDLHRPTIAQQSTITKSSNTGITRPDDTPKSKTTGSAPGRTKEECETQAQEVEAIN
PPVEQKPTHSPKTAEKSPKLKDIHCRRFNGKEEYPGLGAGLEDFLNEFEGAIRMEKLLNKSTWSSQLKAPVLGTFLEGQA
SRSYHDFVADREVSYEDLTVHLKKEFGCHLSQYELARRMDAPKRQNDTWKQYITYLKFIERLMVGDRSQLLLETVCNNAC
PEEKSTLLSKIDETNTNYMDELDKVVDLLIRLKGDGRRVGNARPGGQGSVPRQPQQQGQHHSNGNPIKKRVGQGNSPKQQ
RQSQTTGQQRQGLKQNHNAQANASEKTITCWNCGEPGHKSLQCKKPKKQQQASVHQAQRLERDADESDDESAELWMANEH
GETTSTNWLVDSGASHHMCSTSTPLFGTSPSDLTIRVANGGLLHANVKGSCIIRASNGYATRSVLLHEVHQVPGLNRNLI
SVTDLGEHGITTSFGASACTLTNQRGDIVAIAKRQGKMWILNGETARTDDNAAVMFAQMTKATLQHWHERLGHVNFQDLL
RMYNHGLTEDMDVVSKKLKFCLSCAQAKQTKSKQPTVDTSTSAPTDQLGAVIGVDLKTDIQPDRNGNKHMLTIVDYASSY
NRVFLLQTKNEAAKHLMNFIPEFERQFGVTVKTIRSDGGGEFRSHEVTKYCSRHGIVHQETLPNKSASNGKVERMHRTLM
NSGRAMVWASGLPERYWGDAVKYASYIRNRLPTRANADYKAPLDVLTGKPPKVGHILKFGSTCTTHVSHKKAASVKRRAE
KAVVIGISENQKGYRLLLPRTRKIIASSDVQNIEKLDIREKETQEALSQLGGKEEQTPPEEEPAEESVTEQTSSATGLVE
ISTPNSTSKWKRKKRTINLSETSDSGEDEYHGHPISAGAIRRVFGSRKKTKRQSDFSLPQLLIEEFAGSATLLLTTATPP
MVTPRNLDEAMQTPEWPQWKEAIEKELKELQSNGTWEVIKCPAGANVVSSKWVFRIKFNSRGELERFKARLVARGFTQRF
GIDFEETYSPVLKITSLRFLAALAAQWKRRLRQGDVPNAYVKAKLDRPILMRPPKGTPCTRDTAWLLLKGLYGLKQSGLL
WNKEINAFLLSLQFRRSKLDPCLYSRRRNGKLTVLGLYVDDVIIVSEDDADSDEVMLLLGQKFDIKDMGDAEKCLGICIK
RNDEGIFLHQSDTIEELLANMEMASCRPVHTPMDTTRSFDDNEMMTNTGLMRKAIGSLLWISNCTRPDITAAVNYLARFV
SRPRQSHWTGVKRILRYLRGTSSFGLFFKSGQGAGCQxRATVYTDADWAGDSSDAKSVSGAVLMLNGAVIAWASKKQTSV
ALSTMEAEYVAAAVAMKEAIWVKQLLVEIGLWTKDKTIVLQVDNQSAIKSMKNEITSARSKHINIRYHFIRDVIQRGDVM
VQYCPTQKQLADILTKPLQRVAFQRLREQLRVGQLGKTSRE
>Copia-1_NV#LTR/Copia 103-3987 [Nematostella vectensis]
MLKLKDTILPSTDAPDATKNEECYAELIQFLDNKSLSLVMREATDDGRKALKILREFYASQSKPRIITLYTELTSLEMGV
NETVTEYFIRAEKAITALRNAKETLSDGLIIAMILKGLPESYKPLAIHITQSAGEISFSTFKGHLRSYEETEKFSSKGKA
DQQAASPAPRACYGCGQTSHIRDCPKKSETTKWCNYHKSSNHSDGECKRHQQKGDTTKKVSVMDDTENNEEKHTFTFNVK
DHSNKVLNNPKGMLVDTGATSHIVTTDTITRIDGTFKPSEHCMELADGTRTRNIAVKRGDAMVTLKDVNGRHVNAVLKGA
LYIPSYPQDIFSVKAATANGAEVKFQTGQNELIHKDGTAFTIEEHNKLYYLNTVEPLYGNDSYDKVSVSHDIYTWHEILG
HCNFEDVLKTKEVVEGMNMSGKIDKSKLTCNTCIEGKFVNNRNRKPDARATRPLERVHTDLAGPINPVSREGFKYSISFT
DDYSGAVFVYFLKEKSDSVQAAQKFLADSAPYGEIKWMCIRSDNGGEFISDDFQALLRERSIKHELSCPHSPHQNGTAER
QWRTLFEMGRCLLIEKQVPKFLWPYAVQTAAHIRNRCYNRRTENTPYFMLTGKKPDLSRMGIFGSECYTYNHNHKKLDSR
GVRGVFVGYDKNSPAYLVYHPDKGKVLKHRLIKFISKDCIEQETQTEGLIHNEMPVGNVHEGVGSEQLVNSNGAIKSHPD
VGKVDGEASCTPGDSEQVDNQSHTSGRPQRERQPPKYLDDYVTSVSDSDDITYSSVDYCYRVSGVPQSYFEAMASTNATE
WNQAMAEEMGSLQENDTFELTSLPEGVNPVGGKWVYIIKEDAGGREVFKARYVAKGYSQVEGIDYQETFAPTANITSIRV
LMQLAAQYDLTIHQMDVKTAYLHAPIDQEIYMKQPEGFEVISENGEKLVYKLKKSLYGLKQSGRNWNKLLHESLMESGFN
RNPSDHCVYSKLVGNEIVILIVWVDDLIIASSDMGILNDFKENMKRHFKMKDLGQISHFLGIDFNQAPGQITMGQSRYLL
KVLHRFEMEGCKPRTTPCEQNAGENSEEADPKKYREIVGSLIYAMVCTRPDISWIVSKLSRKLSCPTAADMTDAKHVLRY
LKGTIDYELCFKKSSDGLSLVAYSDSDWASSEDDRKSTTGYCFSLSPEGAVISWKSRRQPTVALSSCEAEYIGLASTTEE
SLYLSQLLSNMGKESYSCTKLYGDNQGAIALSKNPVNRQRSKHIDVRHHFLRDAVSNGKIDIVFCPTEDMVADIFTKPTS
KVKLTKFKKFLFGC
>RTE-8_BF_pol#LINE/RTE-BovB 287-3397  [Branchiostoma floridae]
MESLHHLKFRVGSLNVGTLKGRSSEVVETLTRRRVDLCCLQETRWSGGLDANQARFVKGKDSRYKFYWCGNKQGQGGVGI
MLAEKWVENVFEVQRISDRILLLRLVIGKSVFTFLSVYAPQIGLSDAEKERFYDQMQSTIAKIPASETVFPIGDWNGHVG
EDAQGFEEVHGGHGFGERNTEGERILEFAVANDLLIGNTLFVKRESHLVTYTSGNHRTQIDYILFRQSFRKAVSNIKVIP
GEECARQHQLLVCDFVVRTPAVRKRKFTPRLRTWKLRDTAVAREFRETFVSKVESVTTDATGGEVEDLWSRLKTPLLEAA
ASVCGYSKNHLWKPETWWWDDHVEEAVSKKRARFKVFNSLRKQGKTAVAMVAKTAYNEAKRLAKHAVWLAKSAAEKETFA
VIDPQGADVYRVAKQMERSNQDVVGEMCVRNDAGELSLNDEDKMKAWVEHYNRLLNVEFDWPMDELPEAAPVVGPAPPVT
TEMISKALSKMRFGKAVGPSGINAEMLKAAGEEGIELTRQLTEAVFRNGTVPVEWEKSIILSLYKGKGEALDRGNYRGLK
LTDHVMKLLERVLDSAIRKMVNIDDLQFAFVPGRGTTDAIFIVRQLQEKFIAANKPLYFAFVDLEKAFDRVPRRVLWWAL
RSLGVEEWAVRVIQAMYANARSRVRVNGQYSEEFGVGVGVHQGSVLSPLLFILVLEALSREFRTGVPWELLYADDLVIIA
DTLEECIARLKAWKSGMERKGLRVNMGKTKIMISGQGLNKLKETGSFPCAVCRSGVGANSIQCTVCNFWVHKRCCGIRGS
LLAVQNYTCPRCRGEARPLDGRPTTQVTVDEVVLDVEASFCYLGDMLCAGGGCELAVTTRSCVAWGKFKKLLPILTSRHL
PFKTRGKVFDCCVRAAMLHGSETWAPTTSDLQRLRRNDRAMIRWICGVKPRDETPSSSLLDKLGILDIISVLQSRRLRWF
GHVERSSDCINKITKLKVSGNRGRGRPRKTWRDCVSRDLKECGLTGVDPLDRAKWKRSVKTGRLLPTPASGNPAAV
>R1-1_DT_pol#LINE/R1 1583-4161 Fragment (C-term missing) [Drosophila takahashii]
MKFLQINLNHCAVAQLLLEQNVIEENVDIALISEQYRNKNSGEWLADDSKKSAIWSCGNPKLQISRKKSGNCFARAHVNG
IAFYSCYLPPSHSLXQAISALEGIAEDARENRPAVIAGDFNAWATDWGSPRTNPRGKALLESFAALDLVLLNSGTKPTFS
RAGTSSIIDLTFVSAGLASGSSWEVSDTYMGSDHAAIICTIKSRNGPPRVPRTVXGYKIETLDVEMVQMLFEDLSTSGSA
EERANHIADYAKLACDASMQRKGRNPSGRRPAYRWNQSIAEARKDCHRARRAYQRSRGRPEFESLQXVFREKRRALEKTI
KESKRRCFNNICEEIDSNPWGFAYKLVTKRLRVFSRPSPTCPVALKRIVETLFPEQESMARTSQIVNTASIKLTSAEEVL
RVLKTILDDKAPGPDGIPNKVLKIAIKANTKEYVDMYNACLTEGVFPSRWKQQRLVLIPKGDKPAEEPSSYRPLCMLDTV
GKILERIIHSRLEGALVETNGLSEMQYGFRKGLSTIDAVGKLCEIADKAIEGKRWLYGTKQYCIAATLDVKNAFNSASWD
HTLNALRNLNVPMYIQRVIASYFEGRLLLYETDSGQSTHRVSGGVPQGSVLGPLLWNAMYDGILRITMPEGARLIGFADD
VAIVVSAKKLPDAQRICNEAGERASAWLDAKGLTLAAHKTEAVLISSRQVVETATIKIGEATIKSRPSLKYLGVMIDHRL
TFKDHLAYASGKAGRTAAAISRIMANTRGPRQPGRRLLVSVVTSTLMYAAPIWARATETESYMQEADSVQRLCALRVCCA
FRTVSHDAALVISGIIPIDLLALESVEIRAGSTGIATAESLRKRCRELTIAKWQERWERS
>R1-1_DF_gag#LINE/R1 239-1690  [Drosophila ficusphila]
MASRGPGPVSIIKEAPQGKAESAAAKDSAAPEADPFRKSSKMGRSPTKVPKSPPIFSPAVEQEQAXTAHAGGPTEAGVFH
FSAISEQGLAPLIANGDIDGVVGAIGAKLSQLNSMMXGKTRVMVTIPMKELVQQVIALQKSAVRILETAPKNPSEQKPTP
KRSRESPRAGKLSAPKRQKVPQPCGTSNKVVKSITYASAAKEISGPLPPSHAAKGTKEGAEKWSTVTKKPKKQQPKKQQQ
QRKLPPRTDALVVKCGEGMQYAEVLKLVKNNPTLQQHKDCVKGIRMTGRGELLIKMMKTADPATSKLQKAMQETLSDKAE
VKELKELVQVEIRDXAEFSSKDDIIQAVFANYEGDIPPAAIPSLRKAYGGTLIARMSIPPVLAEKILAEGKIRIDWAHCR
VRKTVEPKRCYKCLAFGHMALHCRSKVDLSKACFNCGGLDHESKSCSKEARCLLCAKTHGANCKHHTLSRSCPAYQQALK
AKGK
>R1-1_DVi_pol#LINE/R1 2041-5040  [Drosophila virilis]
MLRLLQINLNHCIAAXAILEQTVREMRIDIAIISEPHHRETNCPRIWTEDQDGKAALWVCGDPSTSLTKTKSFTGFVRAQ
YGSLWIYSCYLAPSMQLCEFTAALDALVDDARGRKVIIAGDFNAWAVEWGSQATNARGRALLESFAALDIALLNFGSENT
FTRGGIGSIIDLTFASSSLFSATKWQLSDLYTASDHSAIICTIGEGTAASTRSLSRKAYRLDTFDPVAFSNAVHSLATAG
NAERRASQMACQLSRACDESMQTRKTFRRHHVPTYWWNENIAEARRNCIQARRIYQRARGRPNYAEQQLRYQSARKILKK
SIRDSKRECFLELCDSAEYDPWGKAYKTVVKRLYAGKQAQPSDPSELKLIVETLFPIRPDVLHTQAIPSSHVAAMPSLID
EVSVEEVLTIARSLKPSKAPGPDGIPNRALKLAMSLRPAQFVQLFNMCLMERTFPTIWKLQTLVLLPKPGKPPDDPSSYR
PICLLDTLGKVLEKLICNRLQVAVDNNGGLSQNQFGFTKAKSTIDALEKVVGIATNAIQGSRWKSGTKKYCLIVTLDVKN
AFNTARWDKILDALSTFRVPYYLQETIRSYFTGRLLQYDTADGPTTHQVSAGVPQGSVLGPLLWNIMYDGILRLELPIDT
SIIGFADDVALVVVGKELKDVEESCNHSIDRVHQWLAAAGLELAAHKTEAVLVSSRKRVETAHIRVGSATIESARALKYL
GVMLDTRMSFKEHLEYVHKKAAESCRALSRIMLNTRGPKQQRRRLLMTVNRAVIMYASPIWSRAMAVPSYSRGVHSIYRL
SALRVSCAFRTVSDEAALVIAGMVPLSELATEAVVCYRAHDGSNTANSTRTEARMQSVARWQARWDRASKGRWTHRLIPN
LEAWTNRKYGNTNFYLTQLLSGHGCFRSYLKRFGHDNTDECSWCGRGIIEDANHVIFECGRFAANRQELEDIMGRPITVX
NLVTSMIETAQKWDAASTFAAEVMRELRRVERSRRRTADI
>R1-1_NVi_pol#LINE/R1 2303-5331 via tfasty with LINER1-3_NVi_pol, 2 frameshifts. [Nasonia vitripennis]
MDLTILQCNLNGSSVAHSLLPQIAAETDADVLVISEQYRNLSEPSWIASSSNTAAVWVRGVNAARIIDSGAGEDYAWVRV
GSVTIVSVYLSPNNSAQCARIRRKLEALEDVVRNLTGDVIVAGDFNARAIEWGMPTTNRRGRLILQMAARLELEVINDGN
VTTYRRPGFGNSIPDITLATDRMLTRLRGWRVIEDYTASDHQYIVFNLTNDAALRQRQSMRTTRWDIGRINRDEIKRQLQ
NVAIPSADLSQGRTDRAAAERSANDLEKYLQRICEAAMPRKRYRQDRRQTYWWTQEIAEIRKECLRLRRLAGRERDSDDK
RGISREYKLARRLLRQTINSTKRRCWRRLEDEVDSDPWGEGYKIVTRKLGAWNPPETKDADTMERIVHDLFPTHQDRTDD
TDMDTAVECPLFTVAELESAAAKLKPRKAPGPDGVPGELLQIIVAEQPDALLRLYNGCLTAGVFGGPWKGARLVLIAKGK
GDPASSSSYRPLSLLNTPGKLYELLLRPRLLQAVEAAGDLSDRQHGFRRGHSTIGAITHVIQIVDKTNDICHGARPLVLL
ATLDVRNAFNSARWADILEALETTFRVPAYLVRVVKDYLRDRYLTYETSDGTRRRKLTAGVAQGSILGPDFWNILYDGLL
RLDMPDDTCLIAYADDVAAVITARNTHLAQLKLNQVMRRVSTWMTDHGLQLALQKTELLLLTRKRIDTIIPMNVGTEHTI
TRNEVKYLGVTLDTKLTFWAHIRNATAKAAETTKALSRLMANTRGPRPSIRRLLMSVTHSIMLYGAEVWADALQVKKRAK
AMTSVQRTGALRIACAYRTVSENAIFVIAGVIPIDLLARERKRLYVRSSNVGRADAATEERTRTMEEWQTRWTTNGQGRW
THRLIPEVGPWKDRKHGEVDFYLTQFLSGHGYFRRYLYRMNRVTTPECTYCGQAWDDAEHTFFRCNRWTEQRQRLETLLG
TTITPDNVTKLMITSEDAWRSIATYVGSILRGKKEDGCLDNXARARVGE
>R1-1_DYa_gag#LINE/R1 636-1721 [Drosophila yakuba]
MDSPAGGSAPKGDDPFRRSSRMSRSPTRGVEITVQGAGTHAPAVEKGDQTGPHTTAAITSNRTAVVASLAPAATITTSQK
KISDLISVPTQNIASKSPPGSPIRPLDLSALQHENLRSILDMMDMCAFETQRHVTKETKGAITDLAALNTRAIQLQQSTV
NVAAPAKDIATQTEAEAQKKRPASSALKSVTEKFPVLPPPNKAPKAAATKAKVPNPASFAGVAKNASSTVEWTKVKPKRI
RKKPEAFILKKTGEASYADILLKMRADPNLSEFGNQVRRIRRTQQGELLLEVKGKASENVPLYRGAIEESLKEMAAVRTG
TQRMALTCSGMDEATTAEELHRCMVSQFECCPRRCEGPAQNA
>R1-1_DEl_gag#LINE/R1 401-1704 via tfasty with DMRT1C_gag, 1 frameshift and 1 stopcodon. [Drosophila elegans]
MDKVKGSGHDEAQALAVARAEEELLRKFQMMKQKVPRSPTGIEQTSEAHPXSAPPKVAGPIFNFSSNVDDQTTPKRSREA
TSPEEAIDGAQKKQRVQKSATALTDELGKMLDEMIAKFTDTKSNNKKVVRHVTQATIDSLQAMKKLQSEISATLDETHAR
APTACAAQQTTPSMVGPGQEAASTERVHTGTGNQTRNPGWQQVRRKTKKPRVTGENIRESEDHARLTVNRKSQRPDAILI
KCSEGSYADMLKLVKTEPTLQGLKDGVQGIRRTANGSLLLKMQKPSDPATQQLHTAxSPSSAGAAPRMRKAYGGTQTATV
HLRQEHAQRILDKGKSGRMGNRRIRQKMEPRRCYKCMEIGHMSARCPASEATAKNTQESCFRCGKDGHKYRTCTQGKPKC
IICTRRGITGGEAEHSTLSRLCPEYRKALNCIQHG
>22004035_Fsc_gag#LINE/R1 gi|22004035|dbj|BAC06468.1| gag-like protein (22004029, 22004031 & 22004033_Fsc close) [Forficula scudderi]
EAICKACNNKAKLEDIRVNAPKLSLHNNMTSIVNLPRVLADELTKKKKIRIGWMRCRVLNIYTPKKCYKCQNFGHMSYEC
EGNNEQMKGKCLKCCQAGHVAKECRNTPMCYKCGVEGHQASSMMCPVYRSLVAALKDENKKKKPIRKA
>Proto2-7_CS1_gag#LINE/Proto2 279-1325 [Capitella sp. 1]
MRPTTTNEPDSIYVSKDDKIVIDGLLCYMVHKLHVLNQDALEKVIVSGYSNDAIRASKEKLFKVCPGQRYVGHTGEAAAT
KHVRDMIKLLQERGTAIPTFVSDSGSLSAMPPVTFDSMDVVSLLRRIQSTQEEVSAMKALMASQSETMGCVTKLTQDLSG
RVGNMEAIYVRSEDAPMQDNATEVMQSNEELKTAEDATAMKQVALDPLPATYTQVLKRRPRKKKVVPALVDDGQQVAPAQ
KQRQAKKSVVGTAACELRTVKTKLIRVFVTGMVHETKPAEMEKMLKEKMNNNTVKCELIKKGERSSSFCVSAECLSADGI
YDPTLWPEGSYVRRYYSDRKTSQANSRS
>DMRT1A_gag#LINE/R1 386-1909 [Drosophila fruit fly genus]
FYFPRSAGDQQAKVPLLYLMDRTGGGSAPDPNDPFRRSGRLSRSPIRGVGTPIQGXGGEQAGPPPPKASDCSAAVEVETL
ATTVSTTATSLKTMDFISVPAQRAGAKSPSGSPHRSPELTTTLQNEDLQGILDMMKAKITAILSSFETRRHVTSEDRGVL
VDLSALNNRAIELQEGINKKPPPRSTATQTEAEKTKRSQVAPPRQALPNVQVRKTDNHRSAAKSTGKALPTTADSKPESY
ASVAKDANKDEEWAKVKPKRLRKKPEALILKKTGEVTYSDMLRKMKAEPSLTEFGKHVRKIRRTQQGELLLELEGKASEV
IPSFKNELEATLKEIASVRTGAHRTALICSGLDETTTAQDLHNSLVSQFQGIRLEPEDVRGLRRMRDGTQIASVLMCAND
AIAVINRGVVTVGWSRCRIAQDVRPIRCFRCLEFGHRAPYCKSVDRSDCCLRCGEHGHKAKGCVAPPRCLICSSDVDKNH
ATGGFACPTYKANTKGANSRQNDARRN
>LINER1-2_NVi_pol#LINE/R1 1753-4776 [Nasonia vitripennis]
MKIVQLNLNHCETAQDLLNQYVHETEVDVAIICEPYRALDETSWETDDTGRAAIWACGNVAFQEKMLTSEEGFVRAKIAG
IHVYSCYASPNAPIEQFERQLDRLVQDIAGRKPVIIAGDFNAWAVEWGSQRTNQRGRVLLEASALLDLVLVNQGSTNTFR
RGDAGSIVDLTFVSSCLIGSIDKWTVSEHYTNSDHQAIIMEVRKSEQRPSASTRTNRVGWKTKDYDKEMFLLALEELQLS
GTANSKAEQVMGNITRACDAAMPRRVPNCRRPPVYWWDKEVESARSECHRTRRREQRARKKYYKTGRGQEIVDARGQEMK
DAKRKLKKTIRENKRRCLKELQDEVEQDPWGRPYKIVMKKIKGSYVPPPKCPELLHRVVTTLFPRQLEEPSVIERGANEE
AVPPITIKELLAACRRVGNNKAPGPDGIPNIALKHAIHAHPEVFVDLYNACLEEGTFPTNWKKQRLVLLPKGKKPPQDSS
SYRPLCMLDTPGKILERIICVRMDHFIEGKGGLAEHQYGFRKNRSTLDAVSLVIDTAQTAIEGKRWKGGKKKYCAIVTLD
VKNAFNSAKWSEIHEALRKQDVPLYIRRMMSDYLKDRILLYDTEDGTKTYKVTGGVPQGSVLGPPTWNIMYDGVLRLQLP
EGATVVGFADDIAVVVVAKHKEEVTEIAEEATRIIHEWLTETGLELASHKTEVILISSRKKMEEIKLTVDGHEIASQPTI
KYLGITIDARLTFKQHLEIVSDKAAKVGAALSRLMPNVGGPTQKRRLLLASVTTSIMLYGAPIWADAMRVKSYARMLTTV
YRRSALRVASAYRTVSDNAVCIIAGMPPIDLLAMESKEVFQTKRRTSDKTQKEIWDAARKKTMAEWQTRWDVSDKGRWTH
RLIPKIEDWTGREHGEVNYYLTQFLTGHGCFRAYLHRFKLDDSPNCPACLDANEDAEHVLCDCSRYQMEREELECYLQTR
VTPESMMTTMLTSEDGWNAVNNYVRTILKKVRNDEEKRRQRQGETAE
>HidaAg1_gag#LINE/R1 gi|28569884|dbj|BAC57919.1| gag-like protein [Anopheles genus]
CFLHKGEQVSVVKMSFSSQMQNALGLTRSMSADTSKTSVGKQLPASGIPTLRAPMAAGNAGSVVSKTVEDLQRSLAAEKE
EKMKLTVLLQELQAQISIMMKKSRETKEEARRDKEKAIRHREEYRRDMALIREENTKLLAQLMAMKVVTTTAGSIPSASL
SQRQQSSPQPSMASVVANGDTASTSHRVTLTQSQYRRAPISNFVESDGIWREVTRRKSRRSDNRRNERESTQYQQSVHQP
QQSSRDQQHGAQHRPQTTRPNRQDIIEVTSFTGKMWYQVYKQIREAPEMEKMNEKLHIGRRTAKLNLRMKVARSIDSSEA
MARIQGVLRDEGSVRVLTQMTEVIITNVDPLANDGDIRSAIGNVTGSASSIATIQLWQLSDGTQRARVCLPLAHAKLIIR
LRLKVLYTMCAVKEAPHTPIEKLRCYRCLERGHVSRDCHSPVNHSNVCIRCGTSGHLAATCEAEVRCASCAGPHRMGSAQ
CVQSNSQ
>R1-1C_DK_pol#LINE/R1 17-3004  [Drosophila kikkawai]
MQLIQLNLNHCRAAQDLLTQTVRERGSEVAILSEPYRIGNSRDWATDRTGKAALWLCGVGAQQMCDIKAADGFVRANVGG
TWLYSCYLAPSLSLESFGRILDELSIDLRGHSNVVVGGDFNAWAIEWGSSRTNARGRAVLETFASLDVVLLNEGSRQTFS
RAGAGSVIDLTFVSSALARRARWTIGEVYTASDHEAIECSLGMAGRPSGPPPLPRRAFRQDTFRPRAFASALEGFAVDEA
DGANVMANKLADAVEDACDRSMLQRRPFRGNHRPVFWWSEEIAELRRICHRSRRLLQRARGSPLLVECSERYKAARKALK
IAIRDSKRESFLKLCDAAEEDPWGGAYKMTVKKLNAGGNAPSDPEALEGIVRALFPDGQPVGNFPRAEPGEFRSVTEAEV
LQAGRNIKPKKAPGPDGIPSRATKLALALLPEQVAGLFNKCLQEGTFPVRWKRQRLLLLAKPGKPPGEASSYRPICLLDI
IGKVFERVIATRMTEAVEAAGGLSTEQYGFRKGRSTMDAIMKVVKTAREAIAGSRWKGGTKSYCLVVTLDIRNAFNTADW
GRTLESLRMFNIPSYLLNVALSYFSNRVLTTDTCLGSRAYKVSAGVPQGSVLGPLLWNAMYDGVLRLPMPEGTSLVGFAD
DVAIVVVAKELATVEAHADAAVQAVESWLANAGLQLAAHKTEAVLVSSRKAVETASVRVGGTTIRSQRAIRYLGVLLDTR
LCFKEHLEFVHKKASGTAGALSRMLLNTRGPKQATRKLLTTVVTSQMLYAAPVWAEAAKVKSYVRGVEATYRLCAVRIAC
AFRTISEDAALVIAGQVPLTELVRERAEIYAAAQXREATQQTRAESKITARRRSLENWQNRWDSSQKGRWTHTLIPNLTS
WVERSHGQVDFYLTQVISGHGCFRSYLKRFGHETEDWCPVCGSGVVEDARHVLFECHRFDHERQELEAVAGSSIXAETLV
PMMLADQRVWEATATFAADVMKSLREQERRRKEQTE
>R1-5B_DK_gag#LINE/R1 1026-2528  [Drosophila kikkawai]
MAFRRSSRVLRSPILPASKAPVPTAGENADSLTPKRTRDAASPAGSQRETPPKRCRESQCLKNIAELGKILDDVLNDINN
KQVRHITLVMKTKLARVKDLQADIGEWLNSARKPEETDRPEPAVAFHNCSQGGNNTESTQRRDAAQQTPKVWSKDGATQT
EARRAPTTTEKPQATAANTSAKNQRRAPTPAEAAKQGKTSARGTPAASAPKPRAPNPPQPIGPATEGPEAEGGAWRTFTR
KKRRKKXEAPHRSRPDAVIIAAKGKTYSEILAMVTRRDDSQLAGLGNCVKKVRRTTNGNLLLEMAKNSAESAASMRTSIA
QVLGDTAEVRAMSEDSKVSVLEIRELDALTKEPEIVAAIAEQFSLDGAKVKVRSLRPGYAESQTAVISLPCPLAKAVLKR
GSLRIGWTSCAIRERTGPPRCYRCLEAGHLASNCRSATGRSGCCIRCGERGHKAAKCPNEPKCFLCAASGKKETRHQAGS
KSCPSRSSSSSGAGPRNAPCS
>R1-5_DPer_gag#LINE/R1 711-2105  [Drosophila persimilis]
MAFQKASKVARTPPQAALAPPMKQSSLHSFASGATQDGGKGTDTPKRPRDPPTPSSSGRKTPPKRSRNRXQDIDEIGAIL
DDLLYQMNEKGQRSINMAIKKMVARMKELQVEVKSHLQAPEDKRAAPGGCQCHDHTAGPTGPLPRMTKPSATKATQTASG
AHKSEATPRTEEKSARGRPRQGHQADATRQEETKMQCGKAEDTNPTQKWSEVRGRRAKRKQTGRPDAVLVKCTEEASYAD
ILKLVKAAPTLQNLKNKVQGIRKTASGELLLRMQQSSDPATQELQMAIQAALGDKAAVKAMQETVAVEVLNIDELTTGDE
VCEAIAAAIDGDLTQGAVPYMRKAYGATQVATLNLQPALAKKLLELGKVRIGWVVCRVRQRIAPTRCFKCMAYGHTAARC
RSKRPVSSNACYKCGGEGHKHNQCNNPPMCILCAGKPGDVRSAAHSALSRSCPEYKKALAKLVDG
>R1_DVi_pol#LINE/R1 1638-4724 [Drosophila virilis]
MLDIKMSSRFLQLNCQRSYAAMCDVGAMMCERGSVVALLQEPYATGGCVRGLPACMRVFPDSRANSAVIVNDVSIECTLV
SSTDWGVCVSLSGSFGRIFVVSMYCKFGDPLEPYIAYLDEVLLLVSSVPVILGLDANASSPMWFSKVSRHSSGYSNHTRG
EMLAEWAVSQDVRVVNEPSEWYTFAGPVGQSDIDVTLVNAVAMSMYAFHWCVLGGLGVSDHNPIEIVVTHTITRNESVGG
NRWRTCSVNWSLHGLIVQEAATQVPLNAFNDLNVDEQVVCVNGWITGANDRMFERYRKVNLKHVKWWTNQLSTKRRMVRS
LRKRFQRARATNADGAAQLRIEYSRCMNEYKQMLVKVKEDEWRSFLERNKDDPWGRVYKIVRGRGRETDVSSLRVGNVQL
TAWRDCMNVLLNEFFPRADHQDSPPSVVRPVDPLLDSELEVAFSRLKSRKSPGMDGFTGEMCKSVWKSIPEYMNAMYAKC
LNEGYFPSEWKCARVIVLLKSPDRIRSNPRSFRGISLLPVLGKVLERIMVERLQERMXDQMSDRQFGFRQGRCVEDAWRY
VSDSVEASSSTYVLGIFVDFKGAFDYLSWASVLRRLDECGCRELALWKSYFSGRRACAVGRCECVSVNVVRGCPQGSICG
PFIWNLMMDPLLVQLEQMCKCCAYADDLLILIEGRSRLEIETNAGMCLRTVYEWGESVGVSLAMDKTVSMLLKGRLAASR
PPIVRLNGVNVRYASEVKYLGITFGERMCFTPHIAGLKARLLGLVGQVRRILRSDWGLSRRAVRTIYEGLFVACAAYGSS
VWCKAVTTVVGRKKVLACQRVLLLGCLPVCRTVSTEAMQVLLGVAPLDLEIRRRALMYRIKRRLPLLQNDWLAGRDVESL
GLSECKRLVKECVLSDWQVRWDTSVNGRVTHRFIREVTFAGSRPDFGFGLSLGFLLTGHGSLNAFLHSRNLYDSPECRCG
SAAETWEHVLCECTRYADFRDLRGMGISEVSGGFDVSQSLSTSDRVRRMSEFARAAFSRRRLQLQEGIV
>R1_pol#LINE/R1 1830-4985 [Bombyx mori]
IRSSMDIRPRLRIGQINLGGAEDATRELPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAGVYIRNRVLPCAVLHHLSS
THITVVHIGGWDLYMVSAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKME
DFIGARRLVVHNADGHLPTFSTANGESYVDVTLSTRGVRVSEWRVTNESSSDHRLIVFGVGGGTTGERDEDEEARSDLRP
GEPCALRRYRDRGVDWDLFRSRIHERMGSLDLEEPVAALCEKFTGVITRTAEECLGSLKADRTDRGYEWWTPVLDKLRVA
QGRARRRWQKARRTGGEEEEQSGRVFRDRRREYRRAMHDAETAFYREIAEGGNRDPWGLAYRTASGRRRAPTNVVNGVEY
AGRCSDDVSGAMRTLMWALCPDDYMSRDTPYHARVRIMAALPPSGRDADPLSKDSLRAIIGSLKNTAPGIDGLTARIIKK
ALPAAEAEFVAVYARCVVEGTFPPVWKDGRLLVLPKGNGRPLTDPKAYRPVTLLPVLGKILEKVLLQCAPGLTHSISPRQ
HGFSPGRSTVTALRTLLDVSRASEQRYVMAIFLDISGAFDNAWWPMIMVKAKRNCPPNIYRMLTDYFRGRRIAVVAGECA
EWKVSTMGCPQGSVLGPTLWNVLMDDLLALPQGIEGTEMVAYADDVTVLVRGDSRAQLERRAHAVLGLAEGWASRNKLDF
APAKSRCIMLRGKFQRPPIVRYGSHVIRFENQVTVLGVSSTIASLSRHAAAIGERASRCFGKMSRVSASAWGLRYRALRV
LYMGTYVTTLTYAAAVWYLRAAVHVVRSVLLRTQRPSLTLLTKAYRSCSTAALPVLAGVLPADLEVTRAGRRMRECEGLA
RELAAERRRRIDGDVLVVWQNRWVSEGKGRELYKFFPDVADRKKATWMEPDYQTSQILTGHGIFNKRLADMRLREGHACD
CGAVEEDRDHVLWECPLYDEIRGRMLDGISRSEVGPVYHADLVRDEKNFRLLREFAIHGTRRALRANHEDCLATKNVGDV
SSPRTGRMLVE
>R1_gag#LINE/R1 467-1852 [Bombyx mori]
FGTMSEEERELFSPRVSLARSPPRGPTAPLPAPMPPPAPRGVRAGAAMSAKGRRTGLHIPVASGLSSSAPVTPVDPVAGV
PSFPIPVASGAPTGPLDVAAQGRLELLERANRAVRGIMSVATAASKLNKSEVNLISELGRDILAVVGALGIQLSDKELVV
ERLRSAEASARRDSVAPSMAAGAAAGSGTGPATFATVLRTGPGGVPRSIGASQGPSLAFYPSEGNAELKTAEDTKKEVKK
AIDPKSMAIGIQSVRKVGNAGVVVQTTSPGAAVKLRNAAPPSLRVTEPRRRQPLVAVNGVEGDPSFEEVIECLASQNLDP
EEWPLTRVRAELTGAFKKGRRQSNNTTVVFNASPRIRDALVKIGRVYVGWVACEVTDFVRVTCCNKCQQYGHPEKFCRAK
EATCGRCGEDGHRMEACKAASACCATCRRFRREAMHPTASRDCPARRHAEERFLNQVEYGY
>R1-5_BM_gag#LINE/R1 3-1730  [Bombyx mori]
YVRALKCVAAAVEXHLEAFLQRTSTEEVAGLRSQLERLQAPRKRGAXGGERAGAGGXGRYACGPRRXRGTPGQLGXSATP
APTQETAEKDKEIEELKRRLAILEARASKVERARPPLAHERPAPAPSSRGTAAAPAPAKAAATKVGAAPATRASANLAAP
VKSAGXRAXAQPARPPAAAPAPPQPAKAGPGRSRAKQKRGVNAAEPAQTPQPRPLPPAPSNMDEAWTTVVRRGRRKAQAA
PDPRPVPAAAAPQAMGRAAAGGKRKGRKARKPRAPRSAAVVLELLPAAKEKGLTYGEVMARARGSVDVDAIGVEGGXRVR
HTANGARLLECPGADXGAAADRLAARLREILPDPEVVRIDRPVKMAEVKVTGLDECATKEEVAAAIASQGNCALAQVKVG
ELRSSYSGAFTAWARCPVQAATLLATPPQGRPADSPGRLRVGWVIAHVQLQEARPWRCLRCFGTGHGLARCPSAVDRSGL
CFRCGQPGHKAASCTAAAPHCVLCDAAKRRADHRAGGPACRSAPSSTKRRRGGKKKKKKAEEEPAAREAAGRSVPAAAVE
PQGGTEDEGAMDVTPQ
>R1-2_DPer_pol#LINE/R1 1784-4798  [Drosophila persimilis]
MVRFYQINLNHCEAATDLLSQSVREMRSDVAIISEPYISPEDGFWVQSSSGKAAIWACGKPPLRPSVCAEFRHFVRAKLG
NLWIYSCYLPPSLSRHSFAAAMDELADDARHHKPNVIAGDFNAWAQEWGSDISRSSSSDAIYKGHALLEAFAALDVALLN
QGTANTFNRGGSGSVIDLTFASSSLSPLSTWRLGNHYTASDHEAVVFSIGGEGGCRLTRATQTSRRAAYNPESMRIPRFL
EALRNMEVGGSAQQMVNQLLESLLLACDASMSRKRPFKGKQSPTYWWNDEIQEARRTCLSARRRYQRARRRSGTSWPRLQ
AEYCGARKALKXAIKESKRECFLQLCDSAEKDPWGRAYKTVMKRIHGSNAGSPSDPDQLRTIVEALFPSGAHGLAISAVA
HQPAYSVEPVTEDEIVALAQSLKAKKAPGPDGIPNRAVKLAMAHNPHEFAKAFTQCLREGLFPPQWKLQHLVLLPKPGKP
PDDPSSFRPICLIDSLGKTLEQIIRRRLDNAVEDAGGLSPNQYGFRSGRSTVDAIGRVVDIASKAVEGTRWKGGKKEYCL
IVTLDIRNAFNTVKWECILDSLNRRGVPQYLQAIVRSYFEGRLLEYNTEAGAQTHGITAGVPQGSVMGPLLWNIAYDGVM
RLALPGGCQLTCYADDVALTVVAKHLDVVEANCDTAIQLIADWLRSAGLELAAHKTEAVLVSTRSTVETAHIRVGDQRLS
SKRAIRYLGVMIDTRLSFREHLXYVQEKAANTSRALFRILLNTRGPKQERRILLTSVVRSAMTYAADVWADGIKVASYAR
GVKATHRLCALRICCGFRTISDDAALVLAGVLPIDLLVLEERAVAEAIRAGAARRDARKQAREGSLRAWQSRWDGSDKGR
WTHRLIPDVRYWIGRRHGVVNFHSTQLLSGHGCFSHYLWRFGHEDSPNCSWCGDATEDAEHIIFQCGRFSLIREELWRAA
GGQLTPNNLIEAIVEDPMVWSAWSNFAAGAMKELRRCERRRNESG
>R1-2_AP_pol#LINE/R1 2060-5228 via tfasty with R1_DM_pol, 1 frameshift and 1 stopcodon. [Acyrthosiphon pisum]
MLCKDGFLGQPGQEDRLWEVAMSVHPPLKIVQLNMGRAAAVNDQLLAYCQESGVDIAMVQEPYTNRGKLTGFETAPIRGY
LSKGTRRRGAPNYVDYGAAIIVFNANLVIATRSVGTTENFVSIDLDCDADGTVTLISGYFKYRVPTEVHVDVRGPLFQTA
AQEVLITLDANAFSTRWFSRINDRRGKALVTWLDDHNLNIANKRSPHNTFDGPRGRTNIDITVCSDYLLGKIREWAVIPA
ATSSDHNLISFTVDLSLREFIHRSIRLNLLRRNYNTFVQEYEARTTQRTEIALDLDTMATQVFEDVTYSANxHATRSTRK
RKVTPPWWSPELTNKRKEVRAAARHKADGGRQHYNSIRNEYTMLLRRNKVTSWKNFCTLEGVQPWGKLYRWMKGGNKPLT
AIGLMRLPDRRIGVHAAKVLIPNDPTTQEDARPALAEGDLDPVTEEELKVHAWGLSPNRAPGTDSITARMIRVLWPAIAP
RLVTIVNESLRTGRFPNSWKMAQVIPILKEQDRDTALPKSFRPVSLLPVMGKITEKAINSRLSEQIRPRLSGKQFGFTPG
RSTLDAIQSLLTWINLSAEQHVITIFLDISGAFDNLLWPALQRDLCSLGASLHMRHLIADYLRGRTATMTIGGVSKSVRV
MKGCPQGSILGPVLWNVTVEPLLQTDFPDYVNIQAYADDIAISVLGPNRRTLIERAEATLLPALAWAHERGLTFSAQKSV
AMITKGTLVPGFTLSFGDERIVSADNGRYLGIRLDQKKSFMPHFEALKSSSETLFSRLRGTIGAGWGLRRENIMILYRGV
FVPKIAYGSQFWVHKIKTRQMIRNFGSIQRRALLGMTSAYNTNSTDALQVIAGVPPLDIEIQWLVQKAEVALLPAQLRNE
TLKAKREALLDEWQTRWSNSIKGRWTFRFFPDVRERLLLPLSLGHEVVQFMSGHGNSRAKLASFNLQPDSRCACGMGEEF
VDHVLYNCTLHAEHRARGTQSRSPMAVRSGHVGFHIQALYGASKILQNGCLHGMPMRWKNTRTDKTLWAPECQTPHVFWT
SVKARDGRSGSHVGPS
>R1-3_DPer_gag#LINE/R1 749-2002  [Drosophila persimilis]
MEVGNPFGKSAAMARSPPQPKATPLAQQLAESLSSPTTAPKSLADAVSQIGLILKDLSTLFTGQRHINQRMRDSLTQLVN
LQEMVADLTSQENGKVPERKEADTQTSPIAASRNGRGLGTLERSQATPKRAREPTAGQRQTPPKKFRPRERTVREPETQR
SPTGSSSVGTRKKQTTKKTRPDAVVIASVGNITYAELLKSVKGDATLSHVSGDVESIRKTAKGDLLLRLKKAPSHSAEEV
KSAVGNALGAKAVVRALTEQTRLELMDLDEITTKAEILEALKRATGVTEIPEDAVRSLRATRSGMQIATLSLQAVAANKL
AEMGKIRVGWVNCRIKQIMSPKRCYKCLEFGHISVNCTGEKDHRGACFRCGGRDHEARNCSKDPHCILCAQKTGSPTDHA
SGSFKCPAYREAVRKLKC
>R1-4_DWi_gag#LINE/R1 507-1925  [Drosophila willistoni]
MVSPTASMDQHDRQGRFPLSDCASEDLIFARRPLIGNSPPAAVGSNPVSVATRAILNSPDVSATASSPPVKSHIAELDEL
GSLVWQLDHTFNNRDDNKKPVRHINLSTKQSIVKMKELYEFLCHRVLAGEFQKVPQRQDGATQMTPKANGRNRVLAATNT
SDSPKRPREHSPAQRKTPPKKKKNNAPVTKPSTATSPLRTDRIDRHHNQDEWQKVTNKRRNRAAAQKQRLPKQRPDAILI
ANKGNLSYSEMLKLVTCSENEALKSLGENVKKARRTAKGDLLLEMGKPMPESLSQISDDIGAALGSQFAASALISETRLD
IRELDGETTKEXIVAAFGIRLKVKIDVTAIKSLRKSYSGCQRATVSVPTTAANDILQAGTLKVRWNVCPIRLDNTPRRCL
KCLKYGHIASKCTSETDRTGLCLRCGKSGHKIKECNNSPSCCLCVASGNADYAHTAGSQRCPHGPKGMSTTKQ
>R1-3_DYa_gag#LINE/R1 849-2402  [Drosophila yakuba]
MSVNNITTPGGNHLVGNPPVVNPTAGARILEAPNHVLNQPGEVVASLAASTVIATSKHYSEMDNAGAFQSSKKILRSPIL
PRSPGPPQTGGSVLAEMGDGQDTPKRARTPSSPSGSSRSTPPKRTKADGQIRCADKLSEIGRVLDQLINLTNVKQVRHIN
VQMKAMFARMKALQEDASRGLDMEDEQRHALPGCPKCGDKRMKTEQKSQQTTPRRKRDSFAQTDQTAKGKKPVDKRASPP
RQQAKAAEQIPAQPAGAPSRGKPDTWTKAETRKKARLARRPDAVIVEAKGKTYSEVLALVTRRSDGQLQELGRNVHKVRC
TASGNLLLELSRDGEKSASLMKSDLEAVLDGVASVRALTQDSRLQFLSICDLDPLVAKEDLSKALVDQFQVEASSIKLKS
LRPSFRDTQTAVVGLPCSEAQAVLAKGKLKVGWTVCRVKESDSRPRCFKCLELGHIAARCKSPANRSDCCLKCGQTGHKI
ASCTQEAKCFLCTSARRADARHIAGSRRCPMSTKPPRK
>Penelope-1_Crp_pol#LINE/Penelope 22-2709 (Penelope-4_Crp 96.4% similar, with errors)[Crocodylidae]
MKKKEAKLNSDIYFLSLCKKHNFVPRGLNIYNPLTTTHNSKYASQLCRRTSEKIRNHLLHLIYSKRDQLRKEITTYYNNL
KDRNPIIFPNNIQWIQRDYEKLSTTFILHKKKKWNKLLQEQVPQPQNNHQRNNTNTLQHSNLRLDKTESSNQPTNIINLS
THTLTKTEKSVLSKGLNFCPEKYPNKILQCGELEEFFRRLRLKEYFHDQTEPTPNNNSSSDNIQEKINAKXPPKKSDWTP
HSGRNPNLDRYIDCFRERMNNEIISNTRHHNNLSLPEKKAIESLRSNHQIVIKPADKGGAIVILNREDYIKEANRQLSDT
TYYKELQEDPTPLFTKKLNNTIKSFPXRLQEKLQTLIPPLPNPGTFYMLPKIHKQGNPGRPIISNHGTLTEEISGFVESI
LKPLVTHRASFVQDTTDFLRKLKNIDHLPSNTLLATMDVTSLYTNIPHQDGIQACLTYLQEQDYNSEYRPKDITDLIHFI
LTHNNFTFNNQHFLQTMGTAMGTKMAPQYANLFMSHLEEDFLKNCTIKPLLYLRYIDDIFIIWTENLQSLIEFHQKFNNH
HPSIRLSLEYSSTNISFLDTMISIQNDKIQTTLYKKPTDQHTYLHRTSNHPKHTKKAVIYSQALRYHRICTEENTRDCHL
TNLKKAFTQQGHSSREXDRTFERATRIPREELLQYRRKPPTNRTPLVMTYHPSLEPVRKILKQLQPILERDPILKKIFPE
PPILAFKQAPNLANLITRSKLPQAQNTPNGSRPCHDKKCKTCQHISTTPTITTPHNRAISIPGSYSCTSRNVIYLIQCTK
CPDGKYVGETKQQLRTRMNAHRKSIKDRNTQLPVGAHFSQENHSLSNLSVLILKGNLQNTSQRRAYELHFINLLDTKNHG
LNIDIGFMTHYNLPDI
>Penelope2_Dw_pol#LINE/Penelope 73-2586 [Drosophila willistoni]
MAYAEIKSNYNKYKTVINKYQSTTKKSVKLKSSIKFLLKCRKSKLVPKFISNNSKYNRIFTKDTDTYSDINKILERHTHN
FHTKILSLLIKHKHNILARQNKEKEKATKKLQEQLDENDFKTFMKSESTIAEKLSTTLKRHHESKHERLRKQRNSVLLNK
NNNNTNDWFVNKTNIEFPTDVKALLAKGPKFAIPVEKRKFPLFKYIADGEELVQTLKDKEKQEEARTKFSLLIKDHKTSN
KEDAADRAILDTVEQTRKFLRQNDDILILTSDKGNKTVAMDKTEYDKKMDSILNDLNTYRTLRKDPTTRLQTKNNELVEK
LYKHELISRTERNKLITNTSIPPRIYGLPKIHKEGTPLRPICSSIGSPSYGLCKYIVNILKNITADSTYNVKNASEFKTR
INDTYICDDERLISFDVVSLFPSIPIELALDTIREKWIKIKAHTNIPKLTFMEIVRFCIQENRYFKYKDNIYTQLKGMPM
GSPASPIIADIIMEELLDKMMRTLQRPPRVMTKYVDDLFAIIKEDEIQNTLDNLNSFDRNIKFTIELENDNKLTYLDASI
HRRGNELKLKWYKKPTASGRIINFNSKHPKSMIMNTARGCIQRMLNISDPIFHEETKKEIRRILKANDFPNYTIRTLLKS
NNKKTNKEVSTKRFMSVTYVPQLSERLANSDCYDKEQIQIAHKPNNTLRSIFNRTKSKIDTMDKSNVVYKIPCNGTNEES
CDKMYIGTTKSRLKTRLSQHRSDYKLRQHSNIQKTALMAHCAASGHSPNFDEVNIIDQEQHYNKRYTLEMLHIINTPTNI
RLNYKVDTDNCAHLYRHLLGTSQCVAPRHSVRTCKNK
>Penelope-1_NV_pol#LINE/Penelope 46-2169 [Nematostella vectensis]
MEKFHINYSTKNIPLPSRSDYLQRLIEKTEHFLRRMRWKAHFFLNTDTASTSKETYGFRSTKNPPPVEELKEFEEDMLKM
IQSVKFKNLNTPFLGKLKEDTDNIKKEPKLLIPADKTTNFYKLEPATYKNLLEKEINKSYKKAPSETTQSVHKKNKEIAT
KLDLDDRMDTTANKQAFITLKDHKPNFANKPTCRLINPTKPEIGKISKKILDRINSVIAKKRNFNQWKSTKAVIDWFKAA
ENKHQLNFICFDIVEFYPSISQDLLSRALDFASNYDEITPDEKEIITHSKSSFLVHNQTPWQKKGNTIFDVTMGSFDGAE
TCELVGNFLLSQLQDLNMNVGLYRDDGLAITNATPRATENLKKELCRIFNNNGLRITIEANKQVVNFLDVTLDLKRNAHQ
PYTKPNSSLQYVHRESNHPPSITKNIPAGINRRLSALSSDQASFDQTAPPYQKALDDSGYNYTLRYEPNTVTNRKTRKRN
NILWYNPPFSKNTSTNIGHRFLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTKQIIDNHNKRIITASSATEIASSAPT
TTNNKTCNCRQKDTCPLDGNCLQTSVIYQATVTRKDNNTSETYVGLTENSFKTRYRNHTASFRHAKHRNSTELSKHVWTL
KDNMIEYFISWRILSSHSAYNSTTKRCNLCLKEKLTIICQPKLSTLNKRNELVSSCRHRNKALLRNN
>Penelope-1B_AMi_pol#LINE/Penelope 306-3173[Crocodylidae]
QRNNTNTLQHSSLRLDETESSNQPTNIINLSTHTLTKTEKSVLSKGLNFCPEKYPNKILQCGELEEFFRRLRLKEYFHDQ
TESTPNNNSSSDNIQEKINPPXHQIGHLTVDETLTLTATLTASGKESTTRHHNNLSLPEKKAIESLRSNHQIVIKPADKG
GAIVILNHEDYIKEANRQLSDTTYYKELQEDPTPLFTRKLNNTIKSFPSGLQEKLQTLIPPLPNPGTFYMLPKIHKQGNP
GRPIVSNHGTLTEEISGFVESILKPLVTHRASFVQDTTDFLRKLKNIDHLPSNTLLATMDVTSLYTNIPHQDGIQACLTY
LQEQDYNSEYRPKDITDLIHFILTHNNFTFNNQHFLQMMGTAMGTKMAPQYANLFMSHLEEDFLKNCTIKPLLYLRYIDD
IFIIWTENLQSLIEFHQKFNNHHPSIRLSLEYSSTNISFLDTMISIQNDKIQTTLYKKPTDQHTYLHRTSNHPKHTKKAV
IYSQALRYHRICTEENTRDCHLTNLKKAFTQQGHSSREIDRTFERATRIPREELLQYRRKPPTNRTPLVMTYHPSLEPVR
KILKQLQPILERDPILKEIFPEPPILAFKQAPNLANLITRSKLPQAQNTPKGSRPCHDKKCKTCQHISTTPTITTPHNRA
ISIPGSYSCTSRNVIYLIQCTKCPDGKYVGETKQQLRTRMNAHRKSIKDRNTQLPVGAHFSQENHSLSNLSVLILKGNLH
NTSQRRAYELHFINLLDTKNHGLNIDIGFMTHYNLPDI
>Penelope-1_OL_pol#LINE/Penelope 1-2597 via tfasty with Poseidon_Ac_pol, 2 frameshifts. [Oryzias latipes]
DKAPWIRGETSSNFKNQVQMTAPKPTTMEPTWMNESLHRHVSSNFGNDTLQLVRELEKTALADHKNHLNMRCRQSNMIPK
SLQMGKGVKGHRAENIMHRARTQLLKDRIRQTYFIINNLEGKMKNLQDNLAATVTEEVLEKIVGFTRTAQLAQHNKSKQR
QIKKFQILTNQQQILKDRLNRESRGNHTKARIDRERWIKNISDRELTQTEKEVLSKGLNFSVTTNHIPVVDLITATETAI
KRNNLTGSQAEELRLKISAALSSAKPPPSNLSSDERKALTALEKDHSINILPADKGRCTVILNAVDYEAKVNNLLSDTTT
YEALRRDPTSGYKKKVIDCLQRLERDQVIDKPLYYRLYPGNTIPCIYGLPKIHKEGIPLRPIVSSIDSITYNMAKHLATI
LAPLVGNTEHHVRNSQDFANKVKHLQLDSDETMVSYDVTSLFTCIPTTEAVISVRKRLLQDSQLQDRTNLTPDHICELLE
VCLNSTYFQFRGNFYRQRHGCAMGSPISPIVANLYMEEVERRALDSFPGTTPSHWFRYVDDTWVKIKIQEVETFTDHINA
VDKNIKFTREDTKENTLAFLDCAVIIGEDRQLQVEVYRKPTHTDQYLLFDSNHPLQHKLGVIRTLQHRAQEVPTSSDGKK
KEEQHIRQALRTCGYPKWAFTRSQHTGKQDKKEQEPKGNSISIPYISGLSEKLKRIFRQHNIPVHLKPVNTLRQKLVHPK
DKIPSYKQSNVVYSIHCKENCNEQYIGETKQPLHKRLYQHRRANPSGPESAVHLHLKATNHSFEDSEVRILAREKGWFER
GVKEAIFVKKDKPSLNKNGGLRFILPSIYGSVLKPKQTKPVPPGSLTAERDDQFGEGVTGSPTPS
>Penelope1_CI_gag#LINE/Penelope 19-588 [Ciona intestinalis]
IMATLFEDPEIEEVMVIIEEDINMLEQDDAGSVQTLPEKVTKNRKVKIMNLLQLNSHIQLAEKKAKAMYGSDFEDICQEG
RKTDILAAYNEEKTNSSFTKKFMKLLPNSSIWEERSLLITLLDIXIDVRIADVQPTSTDMVELNPIDLNETELEVAYYIG
GRVLRTLYYKTCKELYINFKDPNVKVYGC
>LOA_gag2#LINE/LOA 1786-4116  LOA seems to encode two gag proteins, or pos 288-4100 encodes one gag, with errors. In-frame with pol. [Drosophila silvestris]
MQTVAWQLELILFKKKIIASVERKYSICKSIRFPKVRIDEFWRNKRSPKNITFISTIRNRNDSASIFTNLMLFGQSYLAL
LDSGANKSVIGGQLAIRLLAADLKLKKLKGNFRTADGQHENVLSALLIPLEYDLLQKEFEFMILPSITQDIICGMDFWKS
FGINISTTTVISELDYSDQTCNNRCLVLQRGPGLKNVWDGSERAELRHQAGRGLRIGNGLPAGRLAANNTRFVVNKQSRT
NSGRIMSIVPTRRLYCRLPKCSLPQPPLSPHIFTYPILSPHLTPGWTKASFEPCRESAWLAARIKTSQVVNPSILHTVLL
QQLLGDAAGTRNFGCEAWGRWLVHPDHRAQHRTPRGNPLSAQRGRESSCHLGVNSVDWMTRTGGISAVQGSNGTSNQELT
PDEALKKAKEPREEIAAHAPRPKRRTSNLTPPVATPKRICPEVVGATRGSATAKVLNKNGAGNLDLRPSTSRAAATKPSS
PTPTEPRLSYADMAKNVRVAVLPVDFPRVMLSHGDLSVLEEAIIDEVIASGGDIAASFTGIHFRVGFLLIECSGEASAAW
LRTATSRLKSWKGVPLKCKVGDDIPSPHCITLFCPRSVGRSTESLLVLLRNQNRIETDTWKVISRRNEGGGALLVIAIDE
LSKCILWRRGTMSSPLRTIPVSGLKKKTGAKPQPAPTGKEDVSVGNITTSDTPASEQSSPTAQPADPSEDLAEDEELADV
TLCQEGILGEEDIPMSSQELAEELQDAAVADVVMTNSGDGCSSRPHSPCQLEPSQKY
>LOA_Ele3_pol#LINE/LOA 1854-5576 [Aedes aegypti]
MIRNIQRRTANVRKMRNASAMIKILQVNLHHAQCATDVLCRRFTKEHLSVALIQEPWVNKTRIQGIQLNSCRLVYDDSQL
SPRAAILIRNDTKCFPITEFIKRDIVAVRMEVSTARGSTEIIMVSAYFPGDAEDIPPPEMAALVSYSQKHNIPFVIGCDA
NAHHLVWGSTNTNIRGEHLLQFLSSKNIDICNVGDKPTFENILRQEVLDLTLCSQSISDKIKNWHVSNEISMSDHKHIVF
EWEGGLMIQKSFKDPKKTDWETYSAILRSEDYIIEPNIQTIIQLEAASDSIKNKILNAYQESCPIKTVSSNRDVPWWNFN
LDKLRKTARKEFNRAKRTSDWSLYRKALTEYNKEMRRAKRKSWVLMCESIEKTPVAARLHKTLSKDHSNGLGSLQRTDGS
LTVEPRETLSEMLRVHFPDSIPQTSLNAEGARLDVSVPHGFLSGDSGAKRDAIKVAKEAFTRDRVVRAVRSFEPFKSAGM
DGIFPALIQKEEETLIPHMVEIFKASLVLGHIPNDWRQVRVVFIPKAGKKDKTNPKAFRPISLSSVMLKIMEKVLCEYID
SKFMKTMPLSKSQFAYQSGKSTVSALHTLVNKIEKTFNAKEIALIAFLDIEGAFDNASYSSIGSAMLRRNFDPCIATWVH
AMLANRQISSELSDSRITVMATRGCPQGGVLSPLLWSLVVDELLDSLERRGFEVVGYADDVVIIVRGKFDSVISSRMQIA
LNHTLSWCQKEKLGINPSKTTIVPFTKRRKVQLHPLFLNQIQLVYSNEVKYLGITLDAKLNWNTHLQTIINKGLNSLWVC
SKTCGKTWGLKPSMIMWIYKTIVRPRITYASLVWWPKTKEATARAKLNKIQRTACIAITGAVRSTPSFALDAILNLPRLD
QFIKLDAEKSALRLKRSTVLLSGDLTGHLSILNEFSINPIVEKCSDWMEKVVNYDSPFTVVFPSREEWEGGGPTISPGSI
KFYTDGSKMNNLTGSGVYGPKTKISVSLGQWPTVFQAEVYAIKECAQLCLKRNYRHATICIFSDSQAALQSLKAFTCNSK
LVWECILALKSLAERNRVKLYWIPGHTGLEGNEIADQLARNGSTNMFIGPEPFLGISNSALNTELNNWLFGQIQSNWNTV
SNANQSKRFVTINTTQTQKLIGLNKRDLRTYIGLITGHCPSRYHLYKIGVVQNTNCRFCDETDETSQHLLCSCSAHIHRR
FKIFGKHYLQPADIWNASPREVVSFIRLITPDWGNYNTAT
>Coprina_Pc2_pol#LINE/Penelope 27-3662 [Phanerochaete chrysosporium rp-78]
MSSRATSLPPAFAGLGLGESRRGPMASLDAVLSRAGSPVPEGRAAALHTSGADSLADARGSSALYRVLENCTSLNEILAV
FPPAYRDCVRGTLSDLNRWARVYAANWLAQQRAARHAAAGTFPSALNSIKVPTFQLSQEWSKEDLARGLNTSAAQAVQKA
KQACFDAYKFALEQEEHWLHEKLDHTRRVREMVAAINVAWENHVKPFALIPKDDAYLDPDSMLVEDGSHPDTRDKWIAPA
SAKGEHNRAIRLCQLAFGRVVQIRLAEVREEERKRLAKQEVKAAADVALGAPVNQQTVQRLVAAQVKAALKARGSSSGSR
PRGVPGGKPSIKGKAKTAPAPPRKSKSLFSAGVRSPLTFSKRRNIRGSGQGTTSLRLGRKDLQPFQFQAPTPTSGSRRPA
TPGQKQRQGAVERVLRDPRWRYEHPSSYPDELLTLPLRTQIQILHTRVPLELVEAARFRAGVHVQRGVEVPWEIACTLSS
GWKYLLPVTWNFSGVFQGWEQFEQSVRWQAHFATNPPPVRFYDHDYDTGRRSERAPPPAPIHIEAGLAAGRAFLNRLSGE
AEQVARRKRREELANLVPVKSALRYLKEHSLVLLGTDKNLGVAVCQAKWYKEQCQRYIDSDKAIIEIDRETAEELVRRLS
RKIGDVIASPKFTDSERRYYAQLFDWLGSKRPEAHGNRVYIPKFHGIPKIHKDPWKIRPIVPGFNVVAAPAAKFISKMLK
KYIAAAPYVLTSSKTMAQELLQLPKFGTEPYWLLTGDIVAFYPNVPLVDASVVCQQYVFNDPDVALPLRVLFGELIGLVN
WGMVYEFDGRYYEQVDGLVMGLACSPDIANLYAAHHESPLVPQVEGLVYYRRYIDDAFAIVAAPSKEEALRRMRIVQFGK
CTIEWECSGTSTAFLDMHVMIDKFSRKVEFQPFRKSMNHHERLPWASAHPFDVKKGTFVSEMSRLAALSSKVSYYQDALA
GLKSLYLARGYPLAVVSSWLRSNGTRMWLNRYTSEAREARGRTAVWVVKTSFNPALEALRVNELWETVKEQWRNVPPGTR
TAFDISKTDFLDRRMLISRKRTTNFGDLIRRVCREVLQHDEMTDEHDVVDPELVDQLKRLARTARGVMKRISVMAVYPLP
SASVSLRGYKPLLDSAHGLSGGTLLTDFASRHRHGYLLGELTDTLHAGLLVLAFVFTFISVIRRFGSLGREPPDFRLGIM
CVRSVVLQGT
>Neptune3_Ren_gag#LINE/Penelope 664-1050 [Reniera]
MKYKPRKMVVISHPSQDELNEAFMQDFKDIFLKHLEAAIDSNKTTLEIKKSRLQSLSNEQGTNHHQPIQQDRANISVSEA
TRPKPKSR
>Nematis_Pp_pol#LINE/Penelope 3-2273 [Pristionchus pacificus]
ITKLSREIGDRLRASERTRLYKKLQYLCPSIIPSCSSPSSSISRVSVASDVVLSPDAISVLSLGPKFVPSRPFPRDITLN
LSISLHQLSFSLRWAHTLLGNSSSSIDPLVHKIPFPSVRSGVPPPVLSIDSKISRLSTHIRDIVSNHRVLPLCNNLSRAQ
SSALRDLRSQISSGSLRVTKSDKGGDFFVVPQSLERDIVKLHLSDPSIYVTSSSAQFKRTCDSIHRQFRAISPNISLPKR
TVDCLLSGVPQVPVMYVLYKTHKCDLASAGNDPSRYPIRPIIVGCGGPTDRISWFLSQLLIPLLKHVPTHLTNTRDALTA
LSSLDSNPDLCFESFDVSALYTNVSNRDAIRATMSLLSSHYRSLDLRGLSLLDIEDLLNSCLDCNIFAFDGLFYAQIRGL
AMGNRLAPILAVIYMHYIEAQSIRDGIVWLGRYIDDYIVVAVTQNHLDSLFTSLNTIGAPHIKLTRETPTDNWLPFLNFQ
LSLTPDGVFNTKWYRKPANRNILLHASSCNPSHSKRSIVISTIRTAINVSSHTYRSQSRSLANHIVSSNGHCPPPRSKCV
PNTRVSRRVDKPLPVFTIPFISDEFTRDIRDALCKVDLEVRIVEKPGPNLLNMLSRNRYLDPPKCPLRERCFFCPTGGEG
CCQTAGVVYLIECSLCSHTYVGETGRPLHLRAYDHYKSSRNPTCNSYKHNAFAIHAISDHNSNPISLKGTIIHRESNTCR
RKIAEAMFIVKLDPALNNRIELSKESAPITL
>Penelope-2_NV_pol#LINE/Penelope 522-2093 (fragment; poor consensus before 522) [Nematostella vectensis]
KDHKQNFENRPTCRLINPSKSEIGKISKQILENINKRLVTKTKVNQWKNTSSVLEWYRQLPSKENSAFICFDVVEFYPSI
TETLLERALEFASEHVNITTDEGDFITKDKHSLLFSNGVPWEKKSSSTLFDVTMGSFDGAETCELVGCFLLHQLKQIPEI
NIGLYRDDGLAIMSQAPRSIEMAKKRICKIFADNGLRITIEANKIVIFLDVTLVLNTGKFRPYSKPANIPQYVHSKSNHP
PNIIRNIPDSINRRLSEISYDEETFNNAAPQYQNALRKSGYNYLLKFQPRAHRPDAQRRNRQRNIIWYNPPFNKNVSTNI
GREFLKLVDKSFPASSTLKKIFNRNTLKISYSCMPNVKQLIDGHNKIILNRRDNEQVEDDRKCNCRKREDCPLNGECLEK
EIVYQARVETGDKCETYVGLTANEFKTRWRNHASSFRIESRRNETELSKHIWQLKDRRINYTVSWKIIARAKAYSKESKR
CNLCTTEKHFIIMKPEMATLNKRNELVSTCRHRRKFILKFGNY
>Pt1_gag#LINE/Penelope ORF1. [Phaeodactylum tricornutum]
LGLGVGFLQFSNTLAAISLHLLISRRLMKSSILLFAIALCALLSACSALRTKPLSAVRMKIVTWSNLIYCSKKCPLIRLL
PLPRWTSRPNLRSLLLLLRRSSPPLSTNASKLDLNSSLSKKKHLGAQAFLRHRRIVRRRRAPRQQRNPRPLRSSLPKNQP
HKNRPVEKSCNSPTSLPTLLPPPPSPLRKRNRIFGIQNDSAVRDRRNENKASVRLCCQPCSHSLPQPKYPSARHACVALF
>Poseidon-6_HM_pol#LINE/Penelope 739-2946  [Hydra magnipapillata]
ERLYSSKKLIDELNLYLQSKIRSNDYEIINNITNKSKNYHYFIKKTKMKEKFYKLKNDISYKINFEKNRPNQILKPAILN
LTNINLDKATTELLNLGPKFVPIQKNIPYMDIITNIETCALELEQQNKQTQAEILRQNCSKILTSSLKLKIKDNLTKQQR
LSLQNLKKHSHLKIYPFDKGTGFALLYENEAKXKLEEQIKNSKIIDYDPTPTFTTKFQKLLCKLRKQGKLDNATYFKMYP
SDCVPPRIYGMVKAHKPEKNYPMRPVVSTINTPPYGTSEYLVKIIQPTLNKNITRLINSRNFVNDAKEWKIDPNEIQVSF
DVINLYPSVPIDEAIPVIINILNDDLEDLKTRTKLTLVDIHQLIELSLSICYFLYEDKIRILPNSGPIGLSLMVVIAEAF
LQNIEKRALDIAFVNSFQPITYKRYVDDSHARFDSKEKQELFLKALNEQNPSIKYTVELENKRKQLNFLDICITNTMNGF
YEFQIHRKDAITNVQIKPNSNINPSITIGVFKGFLCRAKQICSQKYLSQEIDFLINTFFENGYNKNNLIKITKNYLDGIS
KNTTSNQLDQKFVKLPWIPIIGPKLRREFKKQNIRVIFTSAPSLSNILCNNKTKLPPNSNPGVYQLKCSCGNIYIGETKK
KIISRSAEHQRACKNQKWSSSGATEHSKTCRGNFDWLNPKTLAVVQEYKIRKIRESLEINKAKVRREIGIGEGVLNRDDG
DKVKTRTWGPILTKI
>Sm2_pol#LINE/Penelope 1633-3951 [Selaginella moellendorffii]
RYPWTAGKRAGAECGYWDSSHPFRCPGFFFKGSLAPAISNRAWFPASHDWQRWPTPVSRKRSTPTVPTELAKRPRAPDYT
TTSSSSPTTPANSEPETTFTSQRTRDAALTAPQQHPTPRTNPTLWLGKKLASTATPALSSYGSACGQKRQGKSFWLPLIA
PHEALLHFAGNQKVSQLENRVEIGAVHNLSSRMLSAAEKRLLALGLSFIPNPVPLTAKKIMECLDDFQRSVRLRHSFKDS
NSLIPEFRVPNPNFDPPPASWHMESRVARIREHLLQRLSCCKRPRSFLRGWRRDAVLALRHDHSIVIKPADKNLGVVVLD
RTWYIQEAMRQLNDPLVYKRVESIPHQPMHERLLELLLKYKSCSWLDKNTAKYLITLPSPPRKACLLYFLPKIHKQPIRG
RPIASYVGYIWEPLAKWLHRQLFGILLQQETFLMDSHTLLHDLHKQQLPKDCLLFTFDVESLYPSIPTREGLYRLHKFVY
RNFGDSMQARFIMAAAGLILEHNYVEFDGSYFLQIRGTAMGSNFAVVYACLFLCSLEDEFKATSSKWPIYLKRYIDDGVG
IWDGSKESLECWLASYGSLCNSIKITSVISFESMDILDIHFFKGPRFEKCRCLDSTTFQKPLNAYQYLPWNSTHPRHQKI
AFIRAELRRYLLRESNPESFCAIRKLFYTRLRARGYPRAFLIEAFRTIHYTDRDNVLYSPSRKSSSNSLQAPLIFKLPYT
LHSAALDVGNTLNPKQVISEVPSDSLPRVIT
>Proto2-5_CS1_pol#LINE/Proto2 1135-4383 [Capitella sp. 1]
MPISGRSEYVVVNGCQMHQINVGPQFPPVMTHKMTPLRRITLEWKTPKIMITPLMTPPPMTPLMMWTTITAMDSCTKLRL
ITWNSRGHRMDRMEYIQTLMCRCDVLFIQEHWFLDADICKISEHVDNVEVFGVSGMDDSRLISGRPFGGCAIVYSKSLRC
DVSIIKTESRRLCAAKLSLPDGNNFLLCNVYMPCDQLTNQRDVFLSTLCEIDSILSATELNGGIVGGDFNTEMSRLSSHH
TRDLVDFCSSNGLDMCCDLDVCQVDYTYENEASRARSVLDHFIVSENISADVALYECLHEGDNPSDHCPVMMHVNVNVEH
LPTDRSPILRSGLPWRTVSPRVLGDYGAALHVALTSIVVPNAALQCDDWSCEQHTHDIQAYYDNIVKACLDAAEGTVGRK
RKRRGNTPLRRPGWKDHVEPHRERAIFWHALWKSSGSPHDGHVADIRRRTRARYRYAVRYVKRHEEQCRANKLAEALAKD
RGRDIWNEVQKISGRKTNRVAMVDGMVDDRDIGELFARKTSEVFNAVAYDVDRMDSMLASLESDIRSRCARSQCYHNHSV
SLADVFKAVKCLKAGKKDGTVDFSSDYIVNGPDSLSIHFSLLFSLILKHGRFPRDFALSTVIPLPKNKKKSLKCSSNYRG
IALGSVIAKLFDVTILHSNSQVLRCSDLQYGFRKNHSTTQCTFVLNETIQYYLNGRSNVHVMLLDASKAFDRVEFVKLFE
VLRAKGLCPLVCRILVNMYIVQKFRIRWNTCQSSWHRASNGVKQGGVISPVLFVNYIDELLIRLSRSGVGCYIGNVFCGS
FGYADDITLLAPSIHALKTMLNVCSEYAHDFNLLFNTDKSKYIVFNGKRNHPSVNITWDGKTLNSSSSDLHLGNLFGPRA
NDHLITTAIKIFYCRFNVLFRTFHFANLDVKYHLFKPHCMSLYGSPLWDYSSTSCDRFYIAWRKSLRLLFKLKSRTHCHL
LPLIVKDHPVDVQLHRRFLKFYFKALFSFNTCTRTCAELALRRSESNVSRSLHFISTKYGINTHMLHVTTLPALLSRVRH
EPSAGHLTYASALHDFILLRDTHNSPTEHQHFSDIVDYICTM
>Proto2-5_CS1_gag#LINE/Proto2 222-1355 [Capitella sp. 1]
MTGTSISTPPPEVKLVHSELLCFALTHAHNSTLTMLAECLNEFYRPEEVLHARETLWRECHDLLKDARKPRRSQTPVDRQ
TMRPFVDDVCSWIGMLVNNQRCENMNVQFYALNLRRTPPCPPEEINIFSLAARVAALERTRKSCTQRDAPLAVQVHGQST
WDSIPVPEQPRNGEAPSREPPSTAGLHTSKPVAVTAESAGGAPWSTVVKRKTIKKRDEARKQLRDAAKDLRVVVGTEKGT
VLKGCRPTKQLFVNRLERCSTDTVKKYMISKGVTPRDVHCTSKESWLNASFRLTVVATDMDRVFDAHFWPVGVRCREWLP
NASNKRRASVSTCDDPQDDPPETHYSGMEDAEDHDNAADDAAADDAADDVDDNNRHG
>PNL_SM_pol#LINE/Penelope 400-1923 [Schmidtea mediterranea]
MNLKKRLAKSFVTKNLDLPNFYHLIKINKDVPSIKNKPIVSKTNGSTTKTSWLLSKILKSLLNNVLYHLQSSDCLLARLN
ITGKTTHSKFKYPFSLDIIALYTSINQSEAIECVRGRLENNLLIKEMNTKNIINLLTVILENIYFTFDQKVYKQIKGLPI
DSSISGLLAIIFMDYLEQQTLRTIQSIGFYARYLDDIFITTKSKKEAEQIFHIFNEAHRDIKFEIEYQDKNESLNRLDIR
IKIDGNTPTYEIYKKSTHKYIFMHQKSALPYLQKVNVIKNEKQRIANRYTEGKKNYKKQLKFDKALRTNGYHNEDIERMN
SKPKIPINRTQKKKKYFYLNIPFISDTLDFKIRKELNHTSLPIRISHKSWTLKQALANNTEKEKICTMKNSKTPKKICFR
KNVVYCIICNACKEIYIGNTFRNLHQRIKERLDPAGKSSHLQKCQPKKEIKSISTKILARDNIQKNFRFKKAIIILDKHP
SINTKEEISEIASLICCKLLTLILLLKD
>Penelope-7_HM_gag#LINE/Penelope 28-885  [Hydra magnipapillata]
MSAXKQFSDYSDKLYEVIFNKLKDTLHLIISDIKPLIRETIESTLKECLSIYQQHNTTLHDNVEKEYMKFKNQHQRYFIK
SLEKHEYLYYKHSRCTNLLNIYHDCLQQEPLFIPKKFRSDNFHFMSYDEKNAIKKFELQRLKSECEILTIRKDNFLSSLK
NLEDEVTSFINNHASSEEVKEKLVFRYEECKKEDIDRIDKKWAKKLASTKTAYEKDRNNQNSKNLQNNEQEDNHQNHNID
CSTSSSSTNINNNHNQTSDIITSKNWSSPIQKKYNLRSSTYQLNT
>Penelope-4_AAe_pol#LINE/Penelope 2264-4594 Fragment (TIR to pos 2264) [Aedes aegypti]
GLYKDIAFLKQCKKHRLTPVSHKVIVKTAKNPDIIKDIEMQLLRRSIKALYGRINVKTLECYSLHLKLAKEFQDNFQIFL
TKVKIAEFCESERKRKSLSEKFNKLKYQNPKFSRPSQRPNIHNIDGIVVNRSSEQFTDEQLTLLNKGLTYAIPKKPDTTQ
TVIDIETAINNNNLQTSQIQEIRTHTANIIRNTNTTPQNKEHNIIKQLNTKPVFYLRADKGNSTVIFDKSKYEEIMQNKI
KHGPYRIQRTDPLPGMIRRVDKALKEAKPVLGNVVNSLKESNPSLPRIKGLPKVHKPGNEMREIVSAIGSPTHKIAKYLV
QKFQNFPKQFHSKTVKNSKHFTEVIENLKIADDEVLVSFDVKSLFPSIPVKEAISLLEDWLLSQYEGTDWIKQVRTYIKL
TKLCMEENYFSFRDETYKQLNGAPMGNPLSPFLSEIFMANLEKRLEDKNQLPEIWWRYVDDVFSIVKKHILPQTLETINK
AHKNIEFTYEVEQDNKLPFLDLLIVKEHSSLTFEIYRKPTNTQRIIPNTSNHSHQHKMSSFNHMIHRMLTIPLSETGRRK
ELNYIFETGQLNGYTRQTIQQLIDKRTREQYKRSLTTLTQEQPTLKHIAVNYNDETKKLRPILRKFGFELVFTSRNNQLQ
TLLGSTKDPIDSLYKSGVYQITCDHCNKIYIGQTKRTLNTRFKEHVAEVTKAHKDTEKGHVHHFKSKVAEHIYNEQHFLN
TKNIKLLRHISNPWKLDVAESIEIFKQNHNKLLNKDQGNGYSWLFRLIPNLHTHNT
>Penelope-10_HM_pol#LINE/Penelope 1759-3687  [Hydra magnipapillata]
DQQRKLFTPSNEKRNFTPFTLAKLFSSTPHSNMRQYNKEIIQAKSNFSHLFYNKLVTNISKHVLTDDEKELLILGLNFIP
SITNTSLNMHITAFERFKTTLLQQLYFGTEEIMRHPFHKKSNWSPPMTKNKTIINYLNLVECDITALIFSQLPKDKKNLT
PKLIHALNSLMFNPTIIIKKADKGGGICILDKTDYEEKISLLLSDKNTYKLLSEDPTKSIARDVNNLIDYMFLHHMIDKK
TSEFLRPKTPHRTPLFYGLPKIHKIGTPLRPIVSGCDGPIDNLSFFITEFIQPVAEQLPAYFKDTTHFLKLLQSHVLETN
NYILVTADVISLYTNIPHREGIDAVKFYLKRAPPFNGPIKRPPIAFIDIILETILTHSNFQFSTDHFLQLTGTTMGTRMA
PPYANLFMGRIDEKIIDQFSMWISFYKRFIDDIFFIFHGPPEILTQVFEFMNAIHPTIKFTFNNSTTSIHFMDLTINKKL
DGQLETTIYKKATDTTALLHYNSFHPPHQKSNLIYSQALRYNKNISNNYNLIKELKQLAQILVIRGYPIQSINKGFKQAL
RHTQHELINNKYKEEREKEKILPMVTTFGKVGKLINKIVKKHWNIVEQDTDLKNIWPTPPIASFKNIKSIKKFLIQTAHK
KT
>Penelope_pol#LINE/Penelope 60-2567 [Virilis group]
MSYAKIKTKYKDSKRTINKFQLTLVKLTKLKSSLKFLLKCRKSNLIPNFIKNLTQHLTILTTDNKTHPDITRTLTRHTHF
YHTKILNLLIKHKHNLLQEQTKHMEKAKTNIEQLMTTDDAKAFFESERNIENKITTTLKKRQETKHDKLRDQRNLALADN
NTQREWFVNKTKIEFPPNVVALLAKGPKFALPISKRDFPLLKYIADGEELVQTIKEKETQESARTKFSLLVKEHKTKNNQ
NSRDRAILDTVEQTRKLLKENINIKILSSDKGNKTVAMDEDEYKNKMTNILDDLCAYRTLRLDPTSRLQTKNNTFVAQLF
KMGLISKDERNKMTTTTAVPPRIYGLPKIHKEGTPLRPICSSIGSPSYGLCKYIIQILKNLTMDSRYNIKNAVDFKDRVN
NSQIREEETLVSFDVVSLFPSIPIELALDTIRQKWTKLEEHTNIPKQLFMDIVRFCIQENRYFKYEDKIYTQLKGMPMGS
PASPVIADILMEELLDKITDKLKIKPRLLTKYVDDLFAITNKIDVENILKELNSFHKQIKFTMELEKDGKLPFLDSIVSR
MDNTLKIKWYRKPIASGRILNFNSNHPKSMIINTALGCMNRMMKISDTIYHKEIEHEIKELLTKNDFPPNIIKTLLKRRQ
IERKKPTEPAKIYKSLIYVPRLSERLTNSDCYNKQDIKVAHKPTNTLQKFFNKIKSKIPMIEKSNVVYQIPCGGDNNNKC
NSVYIGTTKSKLKTRISQHKSDFKLRHQNNIQKTALMTHCIRSNHTPNFDETTILQQEQHYNKRHTLEMLHIINTPTYKR
LNYKTDTENCAHLYRHLLNSQTTSVTISTSKSADV
>Penelope-11_XT_pol#LINE/Penelope 1-1605 [Xenopus (Silurana) tropicalis]
FQPLACYVDMALQELTPLLTHCLWDITQFLNVIGETVPPTEDFLMCSLDVKDLFTSIPHSDGIECVRMYLSRTNLPNHKI
NFICELLEMVLVKNYFQFNNEFYLQCQGCAMGANMAPIYANTFMDFIENTHILVGEYAQYIHTYVRYVDDTFLIWTGTVS
KLHDFVEHLNNVHTTIKFTLEFHPNTLHFLDVDIMYMNNEFVTTVYKKPTDRNNFVQSKSFHPPGLLTGLPKSQFLRVRR
ITSNDALYDIEAEKMMSKFIEKGYDVASLRLINEQVKAMPREELLKKRKRENKKCQQSVFVTTFDNNAGLIKKTVLKYWG
VLKADSKFGKLFNNPPMFSYRKGKTVGELVKSRVTCRKMNSELIEKGGTYPCVNCSHCNGIIRGANVIHPHNGSKMPIKG
TFDCTSKNVVYYIKCPCGLGYVGQTSRAVRVRLNEHKSTIRNYKPPVSMVLEKGKENEPVKKLGKEKRETTLAKHFFECG
HQVSQLRWQILEQVKGREDHDIKRRLLQRECYWIWALKTKYPRGLNEECIMSCFL
>Rex1-23_NV_pol#LINE/Rex-Babar 144-3194 [Nematostella vectensis]
MALFYTREALKAVFTSAKAKPLSRNLWDTLNGLQISRFRPTRRSKRAGQRKQRPTSVSTSRREGSAVPGLAEMHSVPDIS
NLNEGINLHTPNQNLLNIQCDTQPSDKNNIGETETGPTRRHLRAKVPNVIVSNVMSLAPKIDEVKEFVLRKEADLVFITE
TWLKESVSDGVINIPDFSVVRRDRMEQMHGGVCAYIKDGCRFQHLKELNCCEDHESLWLHLRPNRLPRGFHCIIAAAIYH
PPSADDQSLREHLFQSLALVESKFPNSGILLTGDFNRLDVSGLLRHFRLKQIVKVPTRKDATLDLILTNMHDHYAAPQAF
PPFGLSDHNTVLAAAIDKKQNNNRKKTIIKRDLRTSSKAALGRYLISIDWSLLFAPLSDCDQMWNTFIEVVSTGLDIIMP
EKEYHICAADAPWMTPGLKSIILKRQEAFKNHGPESVQFKFFRNMVNRERKVCRSRFYDSKVKQLKGENPKKWWDEVKRL
CGAKVTNGDLTTQINIENFSELPMQDQANRINSAFLEPLEVYRLNEPLERFPLEDEPVFLSVTEDRVQKVLSKLHPRKAS
GPDNVPSWLLKEFSDIMAQPITQILNASFKDQRLPPIWKMADVPPLPKTKPVLDLKKDLRPISLTPCVSKVAEEFVVTDF
VKPAVLEVIGQDQYGAIPKSSTTMALISMLHAWALGTDGNGATVRTLLFDYRKAFDFIDHSILVDKLSRLAIPRSVVNWI
IDFLSNRFQRIKLAKGCYSEWGPVPSGVPQGTKLGPWLFVLFINDLECNSPHLWKYVDDTTVSEVVLKGELSSAQGLVND
IIEWSHDNRVVLNPDKCKEMRISFARSPRPFDAITIEGKELEVVKSTKLLGLTISDNLSWNAHVNEVVKKSSKKLYFLIQ
LKRARLPPSDLSLFYKACIRSAVDYAVPVFHNALPQYLKNELVRIEKRALSIILPRTSYDGACDLLGITPLEVHHGLICS
KLFDEIVSDPNHKLKSLLPPSNVSSHNLRKKRPFALPRLKTNRAMNSFTFSMANKS
>CR1-43_DR_pol#LINE/Rex-Babar 3-752 [Danio rerio]
SPLLFILYTNMCQSTFENHFILKYADDTVIVSLLQGDENSHGPIVDHFVQWCEESNLKLNATKTKDMIIDFRRNHTAAEV
TNIRGQKVECVENYKYLGTIIDRSLNFEANCDAVCKKGHQRLYCLRKLSRFHIGPNMLTLFFYRAFIESILSFALVAWFG
GLSLKNRNRLSQVVRWSSRLIGESQLSIESLYSRQLLRIAQNISSCSSHPLSEEFILLPSGRRFQMLFSRTKRFRNSFVP
SSIVALNKL
>ALINE_pol#LINE/RTE-BovB Fragment [Mammalia]
QDLIGLNIYIPPTNMHTDPSDVWNQFDSLLNFIFSKYPLADIIILGDLNARIGNGSAKASSIGNLDWKDCFPMGHFSRDN
CLNQRGKYLVKLIYHHNLIMLNGSPWDKSRGNFTYISNQGASIIDYLIISPSLLISILEMNILDIESDHFPFKLNLXFNI
TVPESDYIYNWNGEIMGIRRLRWKGSFQFHDYFLRSKEF
>Perere-3_pol#LINE/RTE-BovB 218-3193 gi|67625701|tpe|CAJ00236.1| TPA: endonuclease-reverse transcriptase [Schistosoma mansoni]
MRPMHLLTTRAKIFIGTWNVRTMWETGRVFQISAEMRKYNLEVLGISETHWTQVGQQRLSSGELLLYSGHEEENAPHTQG
VALMLSRKAQNALIGWESHGPRIIKASFKTKREGITMNIIQCYAPTNDYDEDAKNQFYDRLQSIFEKCPTKDLTILMGDF
NAKVGKDNTGYEDVMGQHGLGGRNENGDRFANLCAFNKLVIGGTIFPHRNIHKATWISPDHTTQNQIDHVCINKKFRRTM
EDVRTRRGADIASDHHLLVAKMKLKLKKHWTMARTTSQKFNMAFLRDADKLNEFNIALSNRFEAFHDLLNGEGTTIESSW
KGTKEAIVSTCQEVLGQKKHHHKEWITVGTLDKIEARRNKKAAINISRTRAEKAKAQAEYTEANKQVKRSIRTDKRKYVE
DLAMTAEKAAREGNMRQLYDTTKKLAGNYRQPERPVKNKEGKVITDIEEQRNRWVEHFKELLNRPAPLNPPNIEAAPTDL
PIDIGPPTIEEISMAIRQIKSGKAAGPDNIPAEALKANVAATAKILHILFSKIWDEEQVPKDWKKGLLIKIPKKGDLSKC
DNYRGITLLSIPGKVFNRVLLNRMKDSVDAQLRDQQAGFRKDRSCTDQIATLRIIVEQSIEWNSSLYINFIDYEKAFDSV
DRTTLWKLLRHYGVPEKIVNIIRNSYDGLNCQIVHGGQLTDSFEVKTGVRQGCLLSPFLFLLVIDWIMKTSTSGGMHGIQ
WTGRMQLDDLDFADDLALLSQTQQQMQEKTTSVAAASAAVGLNINKGKSKTLRYNTICTNPITLDGEALEDVEIFTYLGS
IIDEHGGSDADVRARIGKARAAYLQLKNIWSSKQLSTNTKVRIFNTNVKTVLLYGAETWRTTKAIIQKIQVFINSCLRKI
LRIRWPDTISNKLLWETTNQIPAEEEIRKKRWKWIWHTLRKSPNCVTRQALTWNPERQRRRGRPKNTLRREIETDMRRMN
KNWKELEKKAQDRVGWRKLVGGPCSIESYRRK
>Expander_pol#LINE/RTE-BovB  158-3337 [Takifugu]
MMINNIGAKFPLPGCGSPGPPPGARPGGGARWRAPGGRTSAHGVRPGAARRGNMGPPSRGLTTCRRGQGGRVHCVLGSSR
RQGPWRSDSRLHKLALGTWNVTSLVGKEPELVREVEKFRLDIVGLTSTHGKGSGTSLLERGWTLYHSGVADGERRRAGVA
ILVAPQLSACVLEFTPVDERVASLRLRVGGRILTVVCAYGPNSSSAYPPFLESLEGVLESAPSGGSLVLLGDFNAHVGND
SVTWRGVIGKNGPPDLNPSGVLLLDFCARLRLSITNTLFRHKGVHMCTWHQDALGRRSMIDFVVVSSDLRPHVLDTRVKR
GAELSTDHHLVVSWLRWWGRMPDRPGRPKRVVRVCWERLAESPVRRSFNSHLRESFDHVPGEAGDIESEWTMFRASIVEA
ADRCCGRKVVGACRGGNARTRWWTPAVRDAVKLKKESYRALLACGTPEAADGYRRAKRSAATAVAEAKTRAWEEFGEAME
NDFRTASKRFWTTIRRLRRGKQCTVNTVYSGDGVLLTSTRDVVDRWKEYFEDLLNPTNTPSSEEVGPGDLEMGSRISGAE
VAEVVKKLLGGKAPGVDEIRPESLKALDVVGLSWLTRLCNIAWTSGAVPLDWQTGVVVPLFKKGDRRVCSNYRGITLLSL
PGKVYSRVLERRIRRIVEPRIQEEQCGFRPGRGTVDQLYTLSRVFEGAWEFAQPVHMCFVDLEKAFDRVPRGVLWGVLRE
YGVSGPLIRAVRSLYDRCQSLVRIAGSKSNSFPVRVGLRQGCPLSPILFIIFMDRISRCSHGVEGVRFGDLRISSLLFAD
DVVLLASSARDLQLSLDRFAAACEAAGMRISTSKSEAMVLNRKKVECLLRVKEEILPQVEEFKYLGVLFTSEGRMEREID
RRIGAASAVMRTLHRSVVVKRELSRKAKLSIYRSIFVPTLTYGHELWVMTERTRSRVQAAEMSFLRRVAGLSLRDRVRSS
AIREELGVEPLLLRVERSQMRWLGHLVRMPPGRLPGEVFRACPSGRRPPGRPRTRWRDYVSRLAWERLGIPPDELEEVAG
EREVWASLLRLLPPRPDPG
>CR1-28_DR_pol#LINE/Rex-Babar 4-3090 [Danio rerio]
MALLCWRRGKGCLLYFTCLSLLYLSDMLVFSFLFIYWTLKLLRGGRDGNCWSYRSDSSELINKKLLVVSWLILTSCVAQG
VLDKIQRYSRTELLDLRSCGGLSPTRFEMDLPEELLRQPRRVSGRVRKRGGRGGVRQRVRRASKLPLPPVILCNPRSLRN
KLDELRTQAGACFEYRESGLMVFTETWLCNEVPESLIQVDGFSHIRLDRDENSGKTRGGGVCVYINDRWCRNFAVRESIC
NPDLELLCVTLRPFYLPREFTNIFICAVYIPPSGNAIRAANQIADCVHKHLQNKPDAPFLILGDFNQCGLEKSLPGFFQY
VKCGTRKKNILDKCYGNIKDAYVAKARPPLGNSDHNVIHLLPTYRSVFKTSKPTTKVMKTWSNESIEELKGCFLCTDWDM
FYQDANIDTVTETITAYISFCVDSIIPQRTIKCYPNSKPYITGGIKSCIKRKKLAFRAGDTVGLRAAQKDLNRELRTARI
KYKEQTEQHLLKSNTKELWNSIRRMTNMTPKRKALFACNESVKANELNDFYMRFETDNLKKCEEILGEVNCNMAEKRRLI
HQGDVTKVFKSLCSSKAMGPDGITCFLLKTFAEELTPAWHRLFQLSVDTHTVPKLWKKSVIIPIPKKPCPQDNNDYRPVA
LTSNVMKSFEKIIIKELRKEVEPYLDQYQFAYKSNRGTIDAISTLTHLVLKHLESPVAYARLLFIDFSSAFNSIQPHKLL
EKLVKMQVNPFVIKWFYSFLTDRTQQVKFNSGLSDVATSSTGAPQGCVSSPFLFTLYTNDCVRQQTNQYILKFSDDTVLL
HLFTKDASIMEYRAAVEWFVSWCDDHNLEINVKKTEEVIIDPRSVSDRSSIVVYDKDIKQVDSYKYLGVNIDXELNWHSQ
VSSLCARIHQRLHFLRRLRLFGVSSSIMMTFYKATIESILRYGIIVWFGNLTVKMKTQVNNLMRVAGKIMGIKTLGSLKD
IFELCTIQQANKILSDSSHVLSVEYELMNSGRRYRVPLCKHNRYKHSFVPFSIKLINEQXRKDGQRLR
>CR1-11_NV_pol#LINE/Rex-Babar 12-3137 [Nematostella vectensis]
MSSQGMYMFHPGLVVYFFARLINFWLSRGRSFVNVFSGSHLGISHASDVLAPSKIVYSSSILKSIGKHQPKQRLPAELWD
NLDDLGIRKPFRSRKAKKSSTNHHGHPVVFPTGYPPGSSVSVSPSLLPSPTTRLHYLRPASIPSLLLCNVRSVAPKIGEL
DCVAKLNRADVLSVTETWLSDDIPDSAVSLQDYILFRKDRPNRRGGGLDFYIRSDIKCKRLYDVELGNDSIPETLWVIAR
PTRLPRSVSCVLFGTIYHPPDANSDDNEALYQHIQETIDQCLSQHPECLISISGDFNPSSTNFSASKLKRLCGLTQTVKV
LTRDTGTLDWVLTNRPHLLPSPAQLPKIGTSDHYAVLVEQILENSPKLRKQSSTRRDTRPSRLREFGQWITTHDWSNLFC
AHTCQAKFDVFYNTITDALDRFCPSRVVRSHPSDKPWMNNKIKSWIAKRQKMLAKFGSDSVIFKFWRGRVVSAIRTCKRS
FYQSKVKKLKDTNTRRWWREVKNLTGQSMSQAEWYSQLIDDSSIASVDNLCKKINEFFVQLTSDFRPLLPHDVTAIVVPD
VPDHFLVSSYEAYKSLRGILTNKAPGPDGIPALILKMFAFELSPIVAELYNTSLKEGHLPGLLKSANVRPLPKLSPPKSI
ETDIRPISLTCHLAKAMEGFTLSRSLPGIVQHLDTKQFAVAGKSCQHAIVYLLHLTLEALDRGGVWVRWFFADFKKGFDL
IDHHILLNKLCSLDIHPCLLRWIASFLEGRTQVVSIASSTSPPLNLNGGIPQGTRLGPILFAVMVNDLIRCWLPRAKFVD
DLTAIEIIPRNAPSTLPFIVSQVQSFATSNNMCLNPTKCKVMAVDFLHYNSFQCPPIATGGTILEEVKSFKFLGVFITHD
LTWEVHCDSIVKKANRRLYAIRQLKRCGVSTDNIIVVYRSLVRSTLEYASVVFADLPRYLSDSLERVQKRALAIIYPGLD
YKEALTRANLATLEDRRTDACCRFISCLTPQNPVYRLVQDRIEATTHSYQLRTRTGNHIKPFATNRFGNFVTNKHALALA
I
>HERO-3_BF_pol#LINE/R2-Hero 215-3220 [Branchiostoma floridae]
MALPAVRSGPASTWTLLITLVIVAAKGTDGFMSFKLPLLSTDTWSGYNNDVKTLLGPLHHELATNEMSPKLAGEGFSDIM
CDFMASKPEFSHTTEESHSEGYISHEPQSLAQVKRLKNKLRKKAFRADATPEDRKAFRDAIKTYSFMKRQQKRKETTKSA
AHQEKEYHKNFWKFAGKCAKGQLDIPPVKPAFSVYYANEYYKNKYSHPTRVDFNKLLWFPHLPVEEQLPANSFDMSPVRP
KDIKAVLSKRCATSAPGPDGIMYGHLKHLPACHLFLSTLFSKLLESGDPPTSWSSGNVSLIHKDGSPEAAENFRMICLTS
CVSKIFHQILSERWAKYMTCNDLIDPETQKAFLTGINGCVEHVQVMREILAHAKKNRRTVHITWFDLADAFGSVEHELIY
YQMERNGFPPIITTYIKNLYSRLKGKVKGPGWESDPFPFGRGVFQGDNLSPIIFLTVFQPILQHLKGVEQQHGYNLNDKH
YVTLPFADDFCLITTNKRQHQKLITQISSNTKSMNLKLKPRKCKSMSIVSGKPSDISFTIDGDPVKTTKDAPEKFLGGYI
TFLSKTKETYDILAKTIETTVENINKSAIRNEYKLRVYMEYAFPSWRYMLMVHDLTDTQLQKLDSIHTKAIKTWLRMQPS
ATNAILYNTRGLNFKSISDLYLEAHALAYSRSVLKADEKVKHALQAKLDRESQWTRKMQKWGIGKCHTIHQQAIHVAKDS
EWTSVRKHVKQQVTDMRHDVWTKHQENLLQQGQMLQLLEEEKCDLTWRSAMYNLPRGILSFAVRASIDALPTLCNLTTWG
KRNTDKCKLCGNRETLHHVLNHCGVALQQGRYTFRHNSVLKHITDTIIESIDTSRINATIYADIQGYTTNGGTIPVHTIP
TTQKPDLIIYLPEQKTLHIHELTVPFEKNIKTSHDRKVNKYSTLAADLETAGISATLTCFEVGSRGLVTPENKTRLRTLF
KIVKAKPPKTLFTDISRIAMLSSYAIWNSRHEPYWESETLL
>CR1-15_DR_pol#LINE/Rex-Babar 1-1453 Fragment; via tfasty with REX1-1_DR_pol, 1 frameshift. [Danio rerio]
VNNLDIVGTKTQSQTMIIQEREVIAVLHNVKSHKASGPDGLKGKVLKECAEQLGVCTRLFQVFLDNGFVPLAWKNSIVIP
VPKIPHVKSLNDFRPITLTSVLCKCMERIVCKELSSQVEKTMDPLQFAYRANRSTVDASLTLLNKVQHHLDRPNTYVRIL
FMDFSAAFNTVQPNLLLERLYNLGVSNWLIIWIREFLKNRPQRVCVNHAMSDCSVLNIGVPQGCVLSPLLFSIYINELQC
NIDDNLTLIKYADDLALVSCQEEMNSSLYFRYIDSIIDWFGKSSLHLNIGKTKELCLGSQTRRVDTGLFKPVTINGQIVE
QVSNFKYLGTIIDNKLNFNSNVEAVYKKASQRLYLLRKLRSFNVSTQTLNLAYRSLIESVLTYNIVSWFGNTTLKQKKKL
AQIINQANKITGHKQHSLQILFDSFMEKRAVVIFKDNTHPLHSAFELLPSGRRFRIPKARRNAYKKSFIPMAVVVLNRIN
VCSE
>CR1-23_DR_pol#LINE/Rex-Babar 1-2106 Fragment [Danio rerio]
LDLCYGSIKGAMKAVAGPPVGFSDHNVVHLLPVYKSVLRREKVRKREIKVWSEDNSLALQGCFDCTDWSVFKETSESIDE
LTEVVCDYISFCTDMIIPHKTVIDFPNNKPWLSNDTKSLLQSKHKYFKQGDMSSVKQLKKAVRVQINKDKIRYKDKIEKQ
LSSNNLRSAWQGVKAMAGCKEDRGGSEINLNGFSSAREFAEELNTFYLRFDEDDFKSENDNLKQHLSCSNSVNISRIQVK
GLLQRTNTKKSPGPDNIGGRVLHTCAEQLSEIFHYIFSQSLMLQRVPEIWKKSVIVPIAKTKFPRELNDFRPVALTSLVM
KCFERFIKGEILLQSKDKFDPLQFAFRQSRGVEDANLTMLNYLFNHLEKPKTHARLLFIDFSSAFNTMKPHLLVEKLISL
FNLDLNICGWILDFLVGRQQCVRVNGALSDFQYCSTGSPQGCCLSPLLFIMYTNDCRSIHRDCHIIKYADDSVIVSLLHD
QDLGHGPAVQEFTSWCDRFSLQLNASKTKDMVIDYRKASPTPNITNIKGLDIEIVDTHKYLGVVIDNMLTFQPNTQAVYK
KVQQRLFFLRKLRSFQVCTSMMTLFYKQFIESVLSFCIVAWYGNLSVSSKNRLSSLVKVAGKIIGFNQTGLMVIYHNYVL
XRAQGILCTPDHPLYSVFQLLPSGRRFRVPICRTNRTRNSFIMVAIRSLNESRGEGDVSIX
>CR1-18_NV_pol#LINE/Rex-Babar 91-3165 [Nematostella vectensis]
MINNPSNVVPVYFCLPILAFWSFLPCYFHLKAVDRGSHVATLTSEPVASTGWSYSNQELKTIRKSQPKQRLEPKLWQKLG
DLGIRKPFRSRRKPRQSRHVCTGLPVVTTVDSTGHPQLSSGCSTNSSSSQTARFPVIPDTIIANMQSLLPKLDELYAAIM
QFPAGIICLTETWLNESHPDPLIHLPGYLCFRNDRTTSRGGGVCTYINSQYPCRRLPEFEDLSIESLWISVRPYRLPRSV
STLLIGVIYHPPSNGEMNRQLVDHIDKNCESFLSKHPDGLVVVTGDFNPSSTGIKAQYVTHKTGLTQIINVLTRDTGILD
WCLTNKPKYFQQPLQLSKMGSCDHYPILIKPNLSVTNPKAHKSSVWRRNLRRSNLDAFGRWITQFCWNTILSLQTAREKF
ERFYTVITDAVNTYLPLQRVQVCATNKPWIGTSLCSLIARRQKALTTLGKDSRLYKELRNQVQRECKVCRERYYPNKVAA
LKESNISRWWQEVKCLSGSVVSNEWWHQLMDDSTPSVQILAERFNEFLLGLTSNFAPISQQVTCSGPVPPELLITPGKAF
KALSRIKVKKSSGPDPVPSVIWKEFAPELSDVVCNLYNSSLMEGFVPQELKESIVHPVPKCSPPKTLSEDLRPITLTSQL
AKVMEGFALDSLFACVKDKLDPKQFSVSGKSTVLALVYFLHCILESLERGENYVRIFFADFSKGFDLVDHNVLMSELDLL
GVNEYLQNWIAAFLTARPQRVKISGHTSSPVFPNGGIPQGTKLAPLLFAILVNRLASTWPYRIKYVDDTTIFEVIPRCSP
SYLPFIANDICNFATERGMRLNPKKCRELVINFLQYQPSPVNALQLMGSVIKRVESYKILGVHISSDLSWNKHVDYVVKK
ANKRLYALRLLKKSGVPVQDLIAIYCVLIRSVVEYAGPVWANITGFLVDIVEGIQKRALRIVLPHLRYKEALETSGLQSL
ADRRRELCISLMTSAKELEPLRSVITGGVINNVHGYSLRSGSMNTYKHISVTKRFGDFVTYRFL
>RTE1_LA#LINE/RTE-BovB 354-3218 via tfasty with BovB_pol, 3 stopcodons.  [Loxodonta africana]
MWHDSMRRNSCKHPLIIGTWNVRSMNLGKLEIIKNEMEHININILGISELKWTGIGHFESDNHIVYYAGNDNSKRNGVAF
IVKKNVSRSILKYNAVSDRIISICLQGRPVNTTIIQIYAPTTKAKDEEIEDFYQLLQSEIDQTCNQDALIITGDWNVKVG
NKEEGSVVGKYGLGDRNNAGDRMIEFCKTNDFFIANTFFHQHKRRLYTWTSPDGTHRNQIDYICGKRRWKSSISSVRTRP
GADCGTDHQLLICKFKLKLKKIRASPREPKYDLEYIPPEFRDHLKNRFDALNTSDQRPDELWNDIKDIIHEESKRSLKRQ
ERKKRPRWMSEETLKLALERRAAKAKGRIDEVKELNRRFQRAAxEDKVKYYNDMCKELEMENQKERTRSVFLKLKELKKK
FKPRVAIVKDSMGKILNDAGSIKRRWKEYTESLYQKELVDVQPFQEVAYDQEPMVLKEEVQAALKALAKNKAPGIDGISI
EMFQQTDAALEVLTHLCQEIWKTASWPTDWKRSIFMPIPKKGDPTECGNYRTISLISHTSKILLKIIQKWLQQYIDRELP
EIQAGFRRGCGTRDIIADVRWILAESREYQKDVYLCFIDYAKAFDCVDHNKLWITLxRMGIPEHLIVLMRNLYIDQEAVV
WTEQGDTDWFKVRKGVRQGCILSPYLFNLYAEQIIxEAGLYEEERGIRIGGRLINNLCYADDTTLLAESEEDLKHLLMKI
KDHSLQYGLHLNIKKTKILTTGPMSNIMINREKIEVVKDFILLGSTINSHGSSSQEIKRRIALGKSAAKDLFKVLKSKDV
TLKTKVRLTQAMVFSIASYACESWTMNKEDRRRIDAFELWCWRRILNIPWTAKRTNKSVLEEVQPECSLEARMARLRLTY
FGHVVRRDQSLEKDIMLGRVQGQRKRGRPSMRWIDTVAATMSSSITTIVRMAQDRAVFRSVVHRVAMSRNQLNGT
>RTE-2_DBp_pol#LINE/RTE-BovB 228-3218  [Drosophila bipectinata]
NTISVKEAREASERNRSNVDDHSKRKKDNDLRVCTWNVRTLYRPGAAQQLADTLNKCRADITAIQEMRWIGQGCIKKKNC
DIYYSCHPERHEFGCGFVVGARMRRRVSHFRPTNERIATIRITAKFFNISLICAHAPTEEKDDATKDAFYAELDRAYGRC
PSHDIKILLGDFNAKVGREDIFGATVGRFSLHETTSSNGLRLIGFAAAHNMVVRSTGFRHLDIHKASWLSPDRLTRNQID
HVVIDARHASNILDVRSCRGPNIDSDHYLVAAKIRTRLCVAKIARRSALRRLDIGKLQSQQAKNAFSTHVSGLLSRAPSI
PEDISDMWALISHSLRASAEEVLGFQRPLTRNPWYDQECHDATAAKDAAYRRTLQAGATRAIVDVYRSRRRDEKRLFRRK
KKEQEGRECESTESSRRRNEARNFYQRVKRLTQGFKTGAVACRDDDGNLVTEAEVVLRLWRDHFSSLLSGSSTDSEDYDP
RTPIYGTDIEVPIPSHIEVKDAIQRLKNNKSAGADGLPAELFKAAGDMLVGSMHQLISKIWLTESMPEDWNLSMICPILK
KGDATVRTNYRGISLLPVAYKVLTSVLCERLKPHAEALIGPYQCGFRPGKSTVDQIFTLRQILEKSYENQIDTYHLFVDY
KAAFDSPRRDRLYAAMSELGIPAKLTRLCRMTLSNTISSVKVGSGQSETFTTKCGLRQGDSLSCILFNILMESIIRKAGV
HRTGTILTNRCVQLLGYADDIDIIGRTKRDVTGAFGAIEKESAKVGLAVNMEKTKFMVCSSRESRRLDSQLTAENYSFGS
VKEFIYLGTAITSTNDVSLEIKRRITLANRCYFGLSRQFNSRALSRRTKTTLYKTLILPVLLYGAECWTVTQSDAAALGV
FERKILRKIFGPICVDDVYRIRYNHELYELYGDVDVASRVKSQRLRWLGHVARMDEDAPARKVFDAVIVGTRRRGRPRTR
WQDQVMETLSTLGVTNWRRRAQDRDAWRHIALQAETR
>RTE-2_Crp_pol#LINE/RTE-BovB 584-3847[Crocodylidae]
MVCLPHLVRGARPKVEKQMANQVPGNKKRNLKTFRLGSWNVRTMCPGMNDNLQMMDNVRKTALIDRELQKLNIDIAALQE
TRLANSGSIREANYTFFWEGRSAEDTRLHGVGFAVCNRLVKTIETPTGTSDRIISLRLQSTDGFVNIISAYAPTLQASSD
DKDNFYDALHQVIEHLPSNERLLLLGDFNARVGADHDSWPTCLGHHGIGKMNENGQRLLELCTLNHLCITNTYFAGKEHQ
KVSWRHPRSGHWHQLDLMITRRKDLPSVLHTRTYHSADCDTDHSLIVSKVKVIPKKLHRAKHKSQPRINIHSTKVQSKCL
DFQRTFELAMSTKATTANAEGTWSGLRAVIQETATEVFGKKKLSNKDWFEAHSEEMLPLVEAKNTAYLKHNQNPTESSKA
KLKHARAMVQKTARRCANQYWTDLCQEIQFASDAGNLRVMYDGLKKALGPTVTKVAPLKSRDGKVKITDKNKQMSRWVEH
YLELYSHETDISEEALDQLPTLSVLAQLDKEPTAEELSKAIDSLASGKAPGEDGIPAEVLKCGKASLLPHLHQLLVCCWK
EGQVPQDMRDANIITLYKNKGDKGDCNNYRGISLLSVTGKAFARVILKRLQQLADRVYPESQCGFRAGRSTVDMIFSLRQ
LQEKCREQNKPLYVAFVDLTKAFDTVSRAGLFKVLVKIGCPPTLLSMIRSFHENMQATVQFDGSTSDRFEMKSGVKQGCV
LAPTLFGIFFSMLLHYAFDGLEEGIYLHTRSDGKLYNLSRLKAKTKVRHILIRELLFADDAALTAHEEGQLQILMNRLSH
ACRMFALTISIKKTVVLGQGVRQSPSISLDNTPLEAVNKFCYLGSTVSDNLSLDEELNVRIGKAATTFSKLSKRVWNNTK
LTIKTKLLVYKACVLSVLMYSSETWSTYAYQEKKLNSFHLRCLWRILDIKWQDRITNTEVIAKANLPTITALLKQRRLRW
LGHLRRMEDGRIPKDILYGQIAGGERRVGRPKLRFKDVCKQDMKAFGIDPNLWEALAGDRTKWRSLLNHGVQHHDEKWSL
ELQQKRDRRKQPVSTVAPNAMYTCDHCGRTCKSNIGLYSHKRKCTTSQ
>RTE-6_Crp_pol#LINE/RTE-BovB 8-2230 via tfasty with RTE-3_SP_pol, 4 stopcodons. [Crocodylidae]
GDNVRNQTDNITINRRLRNAVQRSKTYPGPDCGSDHVPVVCTIKIRLRKLKKPKATKKLNYSILMGKDLIKERYTVAVKN
HFQKLEDEGNMSNWEIFKEALVETAKEVIPSKVRQKKQKWMTEEILEPMEGRKMKTCSMEEYKKLDKRIRSMCNEEKEKW
LNEKCTEIEKQKDKDVTSMYRNIKDITGKGGCTARGCIKAKNGDVIMExEQVLKRWTEYTEELFHDSQEEKPSIMKNMDG
LKILKSEVRTVINxMKTSKATGPMRLQxNRIKCLEEFGIEKLTTVINEIYESGEIPEDLSKSIFSLRSPKRPGAIECELH
RTISLMSHVTKILLKVLMMRARSRIRPEIAKVQCGFVEDxGTRNAIFMVRMLSERAIEMRKDLFLCFIDYTKAFDRVKHE
ELMKMLEELDIDGKDLRILRNLYWDQTAAVKIENELSDFIQIKRGMRQGCVFSPDLFNLYSEKILREIEDLPGLIIGGQN
LNNLCYADDTVLIADSEEKLQGILDKIVSESEKKGLSINCRKTECMVITKKIIPVCNIKVEKEQIRQVNKFNYLGSWITS
DGKCDHEIKRRIGMAKDTFLKMKKILTNSNISMGTKLRVLDCYVIPVLMYASECWTISPSMEKRIEATEMWFLRHILKVC
WTSHTSNEDILLRAGCRRKLLINIRKRQLEFLGHVMRKEEIESLVVTGKIEGRRDCGRQRLTYVKSLSKWMNVSTLEILY
ASKRRDLWKTMVTNVLFGYGT
>RTE-7_NV_pol#LINE/RTE-BovB 280-3324 [Nematostella vectensis]
MTRRGQSHPDAPGLTKPLVHPKHAMRIGNWNVRTLYSSGNVAQAAREMGKRDIDIMGISETHWTGQGKMQLRDGETMVYS
GREDNIHREGVGILMSKNAAACLIEWTPWNERMIQARFYSRHIQLTIIHIYAPTEDADEHLKDEFYTRLQEVLDSRNQHD
MLIITGDMNAKVGDQNWDYERVMGKHGLGVRNDNGERLCELCDLNELVITGTLFPHRTIHKATWISPDGKTKNQIDHVLV
NKRFRNSVKDTRVFRSADVGSDHYLVCATVKLRLRKDPKRKGNIRVKYDTSKLTEKEVRNTFNIKLRNRFQALEQEDEEE
RGEEVVDAKEEVERDFTIMKKALLEVAETVLGKPRKKNKPWISGESWSLIDERQQMNEKILSTRSERVKGQLRKKYREKD
REVKRSLKADKKKWLEEIASEAEKAARSQHMKTLYGLTKKLCNERPRHSTAVLDKDGNLLSKKEEIQRRWTEHFREVLNR
EQPDNPIEPEDEVEFEFGELIEEISVNEPTFGEVKDTITTLKNGKSPGIDNITAELLKADPEFSAERVHKLLVKVWRHET
IPNDWKKGLIIKLPKKGNLKECKNSRGITLLSIVGKILGRIVIDRIRNGVDKKLRKEQAGYRRGRGTTEQVFILRNIIEQ
VNEWQATLYVNFIDFEKAFDSVHRESLWVIMEKYGVPEKIIRIVRLFYEDFQCAVEDQGETGEWFNIKTGVKQGCNMSGF
MFLLVMDWILRRSVGKGENGIRWKFTSKLDDLDFADDIALLSSTKHHIQEKTAKLDGEARRAGLKINLEKTKMLRINAKQ
HGNIVINGKEIEDVSEFTYLGAKVCREGGGMKDLRNRLSKARSVYTRLKRIWNSKKIMRRTKIKIYKSLVLSVLLYGCET
WKMNKKDDKLLDVFQQKCLRRILKISWEDHVTNEEVQRRAGVHQLSSEVKRRRWKMIGHVLRQGRENDCSVALTWTPEGR
RKQGRPKTTWRRTVERERGEAGWRNWDEVRSKAADREKWKSTVKALCATRHEEDR
>RTE-6_NV_pol#LINE/RTE-BovB 224-3544 [Nematostella vectensis]
NEEGTRKGVLKIACLTTPGSVYRDWLGSPSCGRNTRKLKTKWLPITFGAWNVRTLLNRDTAVRPERRTALVAKELSRYSI
DIAALSETRFAEEGQLKEPTAGYTFYWSGRGKDERREAGVGFAIKNELVGKLTSLPKGVNDRLMTLNLPLKGKKQATIIS
CYAPTMTNSDDTKDKFYEDLDSIISATKQQDKLVILGDFNARVGSDVESWGEVIGKHGVGKCNSNGLLLLTLCARHGLLL
TNTMFQLPTRNKTTWMHPRSKHWHLIDYAIVRRCDLHDVLVTKSMCGADCWTDHRLILCKVKFYIHPPRRPQGKKPAKRL
DVQKLGNKDVKERVTKELEEKLDTLAFNTEDIEQDWALFKDTIQSTCNNILGPKTHCHQDWFDENNEEINRLIDEKNRLL
KVYLVHNSQANLDALHKAKHAAQVKLRLMKDKWMIQKTAEIQGFADTHNVKEFYKAVRTLYGPQPAGTAPLLSADGTKLI
SDKPGILDRWAEHFESVLNRPSSVSNEAIDRLPQAEIDATLDNPPTFEETVKAISLMSPGKAPGADAIPAEIYKACGPIA
VNKLTELLQSMWQKETIPQDLKDASIVHLYKRKGNIQACDNHRGISLLSIAGKILARILLNRLLRHLENGLLPESQCGFR
AGRGTVDMIFAAKQLQEKCQEQHTALFTTFVDLTKAFDTVSRSGLWTIMGKFGCPPRFTSMVRQFHDGMQAHVLEDGNQS
APFQVTNGVKQGCVLAPTLFSMMFTAMLADAYSDNDPGIDIKYRTDGGIFNPRRLRAKTKVHITRLRVLLFADDCALNAN
TGLEMQESVNKFSDACNNFGLTISTKKTEVMLQPAPNTPYMEPEIYINSQRLNPVEKFTYLGSTLSRVIHIDDEVNARIA
KASASFGRLSKTVWNRRGISTETKLGVYRAIVLTSLLYACETWTVYQRHARKLNHFHTICLRKILGIKWYDHIPDTEVLD
RANMFSINTMLQQAQLRWAGHVRRMSDTRIPKQLLYGELHYGTRSKGGQKKRYKDTLKVSAKQFGIDPDNWEELADDRTH
WRSVVKKGAKLCEDKRVNQAKHKRHLRKTRAASVTVPTGPVCPECGRAFHARIGLVSHLRTHNTQT
>RTE-2_AG_pol#LINE/RTE-BovB 18-3147 via tfasty with RTE-1_AG_pol, 1 frameshift.  [Anopheles gambiae]
MLGAACPFCPGILRDFNQGCVGPTTRLEVGGEALQATPGKTYATXGNQRISNRTNRYRPTQPNKANDWKLGTWNCRSLTA
PGSTRILSDEVRARGFGIVALQEMRWKGVTERPYRSDCMIYQSGGEKHELGTAFLVIGEMRKRVIGWWPINERMCRLRIR
GRFFNLSIINVHSPHLGSTDDDKDNYYTQLEREYDRCPQHDVKIVIGDFNAQVGREEAFKPTIGSFSAHRLTNDNGLRLV
NFASSKHMNIRSTFFQHAPRFSYTWRSPQQTLSQIDHVLIDGRHFSDIIDVRTYRGANVDSDHFLVMVKLRQKLCVANKL
RYQPTPRLNTDRLKQAVVARDFAIALGEALPEDNTTEAMSLNDHWRMVEQAISSTAERTIGRVTHNQRKEWFDDECRRAL
SEKNAARTRMLQRETRQNVEDYRRLRRQQTLLFQDKKRRFEESDEQLMQQLSQSGETRKFYRMLNAARSGFTPMTAICRN
EEGDILSDEREVIDRWKCYFDGHLNGADTGEDRRRKQRRATLRQQQHDNDEVPPPSLDEVISAIKQLKCNKSAGSDGLVA
ELFKMGPERLAVIMHRLIVRIWDQEELPDEWKLGVIHPVYKKGDRLDCANFRAITVLNAAYKILSRILFCRLSPLATDFV
GSYQAGFVGGKSTTDQIFTLRQILQKCREHQIPTHHLFIDFKAAYDTIDRNELWNTMQQYGFPGKLIRLLRATMDGVQCK
VRVTNMLSESFESHRGLRQGDGLSCLLFNIALEGVMRSAGFDIRGTIFTRTLQFLGFADDIDIIGRTTAAVCEAYTRLKR
EAARIGLRINATKTKYLLAGGSDRDRARLGSRVSVDGDDLEVVEEFCYLGTIVTSDNNVSSEIRRRIVQGNRAYYGLHKL
LRSRRLQQHTKCAIYRTLIRPVVLYGYESWTILTEDANALAIFERRVLRTIFGGVCEHGVWRRRMNHELAELFGGADILT
VIKAGRIRWLGHVMRMPDSCPTRKVLVSDPFGTRRRGAQRARWLDQVESHLSEIGCSRGWRTAAQDRVSWKRIGDLAMST
RRAHT
>RTE-1_BF_pol#LINE/RTE-BovB 1-1728 fragment [Branchiostoma floridae]
TLDEVSPVYGPPPKIDRARTTKAINAMKKGKAAGPSGIVAEMIQAGGDFMADQIASLTNAIIKEEKIPNDWNLSYIINCY
KGKGDSMERGNYRGLKLLDQVLKVVERVLEPMIREQVHIDSMQFGFMSGRGTTDAIFILRQLQEKFLSKRKDLYLMFVDL
EKAFDRVPREVLWWAMRKLGVQEWLVRTVQSMYCHARSSVRVNGKYSPEFDVKVGVHQGSVLSPLLFIIVMEAISRDFRV
GCPWELLYADDLGLAAETLTLLSQRFSPWKNNLSSHGLRVNTGKTMVVHCKYNDSRPSKETGKFPCGVCHKGVGDNSIFC
TQCKHWIHKRCTKIKGKLKEDPNFICHSCSNQAPTPPEPPLMEATVSGDTFKVVPIFCYLGDTIGQSGGCADAVTARIRS
AWKSFHELLPILTNRNIPFRNRGHVYSSCVRSAMLYASETWALSAEDVRRLVRCDNAMTRWICSRRLAERVPSEQLRCRL
GLHSIHDILRYNRLRWYGHVQRMSHDSWPRKVLNLSVVGQNPRGRPKRRWVDNVKEDLRKLQKANPLDRDGWRAAIRPKR
LDDTSNLCKTGKNGR
>RTE1X_SP_pol#LINE/RTE-BovB 626-3298 [Strongylocentrotus purpuratus]
MCPIHSLFLLTWLERRVQWVHHYSGKKDQMKIGTWNVRTLMDTQNSNRPERRTAFVARELRQHDIDIAALQETRLAGDGQ
LTETAGGYTFFWKGKSMGEPRIHGVGFAIKNEIMRTMDQVPLGINERLMTLQMNLSKGRKATLISAYAPTLMAEAEEKES
SYSSLDTLLTQIPRSHKLLLLGDFNARVGKDSTIWNGVLGKEGIGNVNDNGHRLLTKCAEHRLTITNTLFRQKNRQKTSW
RHPRSGHWHMIDYIIVRQDDKKDVNITRAITASDACWTDHRLIRSVMAISLQPKHRKTKKNRAGYNLRSLEQPSVQEAFK
VSMEKSIQERNPSINDDVEKYWNDLKDAIVKSCKETLGKPERYHEDWFDENDKEITKLISDKRSAFTTWQNDIRNANKRA
AYHSLRSLIQCRVRELKNQWWLKKAEELQKLADENKSRDFFTATRKVYGPTVNGVRPVLGKDGSLLKDKDKIRERWKEHF
SDLLNQPSSVETTIIDNFPQSTTLDNLSDAPTIDEVTSAVKAMKNGKAAGLDGIPAEVYKLAGSELHRKLHNLYKLIWEQ
ETVPSELRDALIVTIFKKGDKSSCDNYRGISLLSVAGKILARILSQRLSIVAEEVLPESQCGFRPGRGTIDMIFSIRQIQ
EKCREHHQDLYMAFIDLTKAFDSVDRQTLWKILTHVGCPEKFVKIIRSLYEDMNASVLVAGEASESFAVQTGVKQGCVIA
PSLFSLFVSSVLQLVNQRQPPGINLRYRIDGQLFNLRRLKAISRTTDVTVNELQYADDNAIVASSEEDLQAAMDAFSYAY
SVFGLKLNTRKTQILYQPKPGITHEQQCPPCIKVDGQPLTNVERFTYLGSCLSSKVDIYDEIQQRLSASSSAFGRYSHSF
TQIYANLTLTL
>RTE-1_Crp_pol#LINE/RTE-BovB 237-3890[Crocodylidae]
MEVSGCLGHPCHWVQGSLLSSSCGCRLRTGFPTLKDVTRRPLPGMLTSPTNQVLRRRTSGGGDRNSDLWESLVTNLHVGG
GRVMVVLHLPRQKYNSAAAAVTEQSSLGSPLLTLNGEGARKGALNIGRLKPPWLDCRIQWDHSTCGRNQQNKVLKFATWN
VRTLMDSPNSECPERRTAIVARELARYDIDIAALSETRWADEGQLKEGGGYTFFWKGKSPEERRIHGVGFAIKNKIVSQL
SELPVGINERLMTLRLKLSNNQYATVISAYAPTLDDEEVNKEQFYCALDTVLTATAKEDKLILMGDFNARVGRHSELWSG
TIGKEGVGKVNSNGILLLSKCAEHDLLITNTIFRQSDKYKTTWKHPRSNHWHLLDYIIVRARDRTDVRITRVLRGADDCW
TDHRLVRSIMDMQLAPQHRKQPKGMRKRFNIKALQDQARCEALQQRLTERLSDLPDDIKDIQAHWEELKNVIHKACAESI
GYSTYRHQDWFDENNEEILALIHQKRTAFCSWQNEPSNQQKREAYHRLKAVVQRRLRDIKNQWWQAKAMEIQSFADQHDM
RSFFQAIKAIHGPRSNGPTPLRSQDGSTLLTDNVSIKQRWKEHFKTLLNRESEVSAATIESIPQHPVIEPLADPPSFKEV
WRAITQTKNNKAPGPDGIPAEVFKAGGTALAQKLHQLLIKIWVNEEAPPDLKNANIVTIFKKGDKSVCGNYRGIALLSVA
GKILTRILLNRLLPLAEDVLPESQCGFRPSRGTTDMIFVARQIQEKCREQHQELFMAFIDLTKAFDSINREALWKVLARF
GCPLKFISVLRLLHDGMTATVLCNGSETDPFTIRTGVKQGCVIAPTLFSIYLAVILILIRDRLPPGIGVEYRMDGQLFNL
RRLHSKTKVTKTGITDLQYADDCVILAHTETDLQSTLDLFSGAYHSLGLSLNIGKTKVLHQPAPAQAAPLPPQITIGGEP
LENVEHFPYLGSHLSQSVSLDVEIEHRIRCASVSFGKLLRRVFADRDLQMETKILVYNAVVIPMLLYGCETWVTYRSHLK
RLEWFHQRCLRKILRIRWEDHCTNASILSAANVTSTEAKIMKHQLRWAGHCVRMADTRLPKQVLFSQLSHGKRTRGGQRK
RYKDTLKAYLKKGGINPTNWEVLAGNRSQWRCTIHQATAHFEENRLAQEAEKRQRRKESAQHPGQQLCPLPPQGTTCHIC
GKTCRARIGLLSHLKTHQ
>RTE-1_GM_pol#LINE/RTE-BovB 119-3148 RTE1_MT_pol 90% similar [Glycine max]
MDQLRNNVNARSLPGSNALYGSSTVSKEQGPLHRRPDVVKSKQGFPHFRERVWVKKLVHDRRIRFGTWNIGTLTGKSMEI
VDVMVRRKINFMCLQETKWTGEKAKELDNSGFKLWYTGKIRSRNGVGIIVDKEWKKDVVDVRRVGDRIIVLKLVVGQDTF
NVISGYAPQVGLAEHFKVKFWEDLEGVLQDIPQGEKVFLGGDLNGHVGSVARGFEGVHGGFGLGEMNGEGKSILEFSEAL
DLSIANTWFKKREEHLITYKSGGTCSQIDFFLIRKSDRKYCLNCKVIPGESLTTQHRVLVMDVRIRDRAKRRSPLVAPRI
KWWHLKGEKQGIFQQKIWEGWCGQSQGSANDMWNKMSQEIIKVAKETLGESRGFGPRGKESWWWNENVQSKVRVKKECFK
EWSRCRNSETWDKYKIARNETKKAVSEARAQAFDGLYQALGTRDGERSIYRLAKGRERKTRDLDQVKCVKDEEGKVLVHE
KDIKERWKAYFHNLFNDGYGYDSSSLDTREEDRNYKYYRRIQKQEVKEALKRMSNGKAVGPDNIPIEVWKTLGDRGLEWL
TELFNEIMRSKRMPEEWRRSTLVPIYKNKGDIQNCANYRGIKLMSHTMKLWERVIERRLRKETQVTENQFGFMPGRSTME
AIYLLRRVMEQYRMAQQDLHLIFIDLEKAYDRVPREILWKALEKKGVRVAYIRAIQDMYDRVSTSVRTQGGESDDFPITI
GLHQGSTLSPYLFTLILDVLTEQIQEIAPRCMLFADDIVLLGESREELNERLETWRRALETHGFRLSRSKSEYMECKFNK
RRRVSNSEVKIGDHIIPQVTRFKYLGSVIQDDGEIEGDVNHRIQAGWMKWRKASGVLCDAKVPIKLKGKFYRTAVRPAIL
YGTECWAVKSQHENKVGVAEMRMLRWMCGKTRQDKIRNEAIRERVGVAPIVEKMVENRLRWFGHVERRPVDSVVRRVDQM
ERRQTIRGRGRPKKTIREVIKKDLEINGLDRSMVLDRTLWRKLIHVADPT
>RTE-1_DR_pol#LINE/RTE-BovB  592-4037 via tfasty with Expander_pol, 1 frameshift. [Danio rerio]
NTGSSSLPVISHSSVGVEQGARDCSRRWEGSSGPTGQLPPASSWAAPSQLGTAPPQSAFLIGCMGNRSISNSRLQPSRPD
NKITQRKRPALKLGCWNVRTMLTGLSEDLRGIDDSRKTAVINNELLRLNVDIAALQETRLADSGTLKEKDYTFYWQGRAP
DEPRQHGVAFAVKNNLLSMVEPGRNGTERLLTLRLNTTTGPLTLVSVYAPTLNATLETKDKFYGNLTSVINNIPDKEQLV
LLGDFNARVGANHESWPSCLGKFGIGKMNENGQRLLELCAFHNLCIANSYFQTKPQHKVSWRHPRSKHWHQLDLILVRRS
AINCVLHVRSYHSADCDTDHSLVCCKIRLNPKRFHRLRKQGNPRINVSRMSQPDLTQKFAETLVKELDTAQTGDSALEMW
ESLRNTMQRTALATFGKRTTKTHDWFEAKASTMIPCIEAKRAALTEYKRSPTQKNLQILRSTRSKAQHIARYCANEYWQE
LSNDIQKAAIAGNIRGMYDGIKKALGPTQCKTAPLKSSTGEIISDKQQQMERWVEHYSDLYSRQNTVSSAALDVIKCLPT
MEELDEEPTAEELRKAIDKLASGKAPGSDGIPPDLLKQCKDSLLHPLHKALCQCWKEGAVPQDMRDAKIITLYKNKGERS
DCNNYRGISLLSIVGKVFAKVILARLQKLAERVYPESQCGFRAERSTVDMIFSLRQLQEKCREQQMPLYISFIDLTKAFD
LVSRDGLFKILPKIGCPPKLQSLIESFHTDMKGTIQFNGSCSEPFSISSGVKQGCVLAPTLFGIFFALLLRHAFGSATEG
IYLRTRSDGKLFNLSRLKAKTKVRETLIRDMLFADDAAVTTHTQEELQSLMTRFSMACKDFGLTISLKKTNVLSQDTATP
PTITVDDYQLDVVHQFTYLGSTITDNLSLDAELDRRIGKAASTLARLTTRVWTNHRLTTATKMAVYNACVISTLLYGSET
WTTYARQERRLNTFHLRGLRRILGITWQDKVSNVKVLTRAGLPSMYTMLRQRRLRWLGHVCRMEDGRIPKDILYGELSSG
KRTTGRPFLRFKDVVKRDMKALDINTKSWEDLAADRLKWRCTLTKQLKSGEKNMMRASEDKRVHRKVQSVSQGATYQCDC
CGKKCLSRIGLFSHQRRCLRQSVMPQYKS
>Waldo-1_CQ_gag#LINE/R1 451-1926 [Culex quinquefasciatus]
MKTSETNQQKGPDAPQASENTEVEEDANVEMAGGESNGGDTAGGVASAFRGSGKVLRSPVLNQAAASSQQIGVIGEETPK
SSLLNFAGSTPQDGVLLGRTALQEVRRRVNELFDFIKDKNNVHTRIKQMVNGVKAAMNAAERENNSLVVTRNSLKLRAER
AEETLNAKLEEEALREKEPKTPPGPSSKRDRETPGEEEDAKKQKQGNGDSPDPAKEPEPTPGKEKEWEKVKKKKRKKKGK
QNEDTQKPKFRRERNKGEALVVEVKEGVSYADLLRKVRTDPELKELGENVVKTRRTQTGAMLFELKKDPAVKSSAFKSLV
EKAVGYESKVRALSPETTIECRNLDEITTEEELEDALIVLLDDRTTPMAIRLRKAYGGTQIASIRLSTPSASKLLETGKV
KVGWSVCPLRPVPRVTQQMTRCFRCMGFGHQARNCDGPDRTNSCRRCGREGHMARDCKNQPKCVLCKEGDGNSHATGGFN
CPVYKKLASGKK
>Waldo-1_AAe_pol#LINE/R1 2118-5120 [Aedes aegypti]
MPSLQTSESNEVPVEVVQINLNHCDTAQHLLRQSVAEHRCDVAIISEPYQIPPGDGNWISDGTKTAAIWTVGKYPIQEVV
HCADEGFVIAKINGVFICSCYAPPRWTIEQFNRMLDKLTEELTDRRPVVVAGDFNAWAVEWGSRLTNPRGSSLLEALAKL
NVDLANDGTTTTYRKDGRESIIDVTFCSPGMIRDMNWRVCEDYTHSDHQAIRYRFGRCLQMESSGAQIYERRWKTEIFNK
DVFVEAMRRENNLVNLSAEELTAALSRACDATMPRMGKPRNCRRPAYWWNSTIGDLRAHCFQARRRMQRASNNVEREERR
LPYRAARAALNKAIKLSKKACLEELYRNANENPWGNAYKVAMAKMKGPAIPPDRCPEKMKVIIETLFPTHEPTVWPPTPY
DEQDVHDEETRVTNEELVVVSKALPVKKAPGPDGIPNLALKTAIQENPDMFRTTLQKCMEDGNFPDIWKRQKLVLLPKPG
KPPGDPSAYRPICLLDTVGKLLERVILNRLTKYTENENGLSNMQYGFRKGRSTIDAIRMVVETMETAQKQQRRGNRYCAV
VTLDVKNAFNSASWVAIADSLHRLRVPKYLCQILKSYFQNRTLIYETDAGIRNLLVTAGVPQGSILGPTLWNVMYDEVLK
LNLPRGVKIVGFADDVVLVVIGESREEVEVLATEAIDAVENWMREKKLALAHQKTELVMISNRKAVQNVSIMVGECIINS
KREVKHLGVMLDDRLNFNSHVDYVCNKATKVISALSRIMPNNSAITSSKRRLLASVSTSIIRYAAPAWSAALKTGRNRAQ
LNRTFRLMAMRVASAYRTISSHAVHVIAGMIPICLLLEEDSECYRDRATGRGRNRARANTLSKWQQQWNNAEKGRWTYRL
IPNVSIWTTRAHGEINFQLTQFLSGHGCFKQYLHRFGHARSPLCPECRDIEETPEHVVFTCPRFAQQRSEMTAIVGDDVN
VENIVLKMCSNEDKWNAVNRSVVQIMSTLQRTWREEQRQMT
>Waldo-4_AAe_pol#LINE/R1 2288-5314 [Aedes aegypti]
MMMEITQVNLNHCDAAQQLLWQSTTETKCDIAIIAEPYRVPPDNGNWVADRAETTAIQVMGRFPIQEVVERSYEGFVIVK
INGIFVCSCYAPPRWTLEQYTQMLDVLTDKLIGRTPVIIAGDFNAWAVEWGSRLTNARGYSLLEALAKLDVRLCNDGLAS
TFRKDGRESIIDVTFCSPSLVTNMNWRVSEEYTHSDHQAIHYCVGQRSCAVWQRRNGERRWKTKHFDKDLFVEALRAVSD
APNMDAGELTEALARACDATMPRKLEPRNQRRPAYWWNDRLSTLRAACLRARRRVQRARSEASMEERKVTYRLARAAFKR
EISTSKTNCYKELCREADANPWGNAYRVVMAKIKGPVTPAEMCPDKLKAIVNGLFPTHAPTAWPPTPYADVDEENAGIQV
SNAELITVAKGLKLNKAPGPDGIPNVALRAAILAFPDIFRTALQKCLAEGCFPDRWKVQKLVLLPKPGKPPGDPASYRPI
CLLDTLGKLLEKVILGRLTIYTEGENGLSKRQFGFRKKTSTVDAVRAVIACAEKAAKQKRRGNRYCAVVTIDVKNAFNSA
SWEAIAAALHRMRVPGYLCKVLQSYFQNRVLVYDTNQGRMSIEVTAGVPQGSILGPTLWNMMYDGVLTLSLPNGVEIVGF
ADDVVLAITGETAEEVEMLTAESLDTIESWMTGVKLQLAHHKTEVVLVSNCKAVQQLEINVGGHAIPSKRSLKHLGVMVD
DRLNFNSHVDYACEKAAKAANTVARIMPNIGGPRSSTRRLLATVSSSILRYGVPAWAAALGTKRNRDKLAGTFRLMAIRV
ASAYRTISSEAVCVIAGMIPICITLAEDIACYQQRDTRNVRNTIRLDTMARWQQEWDNSEKGRWTHRLIPNVSVWTTRKH
GEVNFFLTQFLSGHGCFRKYLHRFGHAESPHCPACPNIEETPEHVIFDCPRFRDIRSEMMPETASVLNPDNIVQNMCQHE
STWNAVNRGITAIMSLLQRRWREDQRAPGRDRSRLDPPSGTRPSRAGVA
>WaldoAg1_pol#LINE/R1 gi|28569861|dbj|BAC57904.1| reverse transcriptase [Anopheles gambiae]
MEVAQINLNHCEEAQALLSQVMVEEIGDIAIVSEPYSAPTGSSSWVADKTGNAAIWVTGTIQRVVSNTFEGFCIAEVNGV
FFCSCYAPPSWELERFHVMLDNLVAELDGHRPLVIAGDFNAWAVEWGSKRTNSRGDAVLESFARLGVTLGNAGTTPTFNR
NKRTSIVDITFCSTTLSERLNWRVSDALTLSDHNVVRYAIIQGHRLTSSSAHGSRVGGRGWKTESFNEDFFKELLAFGDF
GEAVSASQIVIALTKASDGAMPRRKPPNGATSRRQPVYWWNASIKIQRAECVAARRKMQRERCPEVKQQLRIVYIAARSE
LQRAIKASKRQHFLKLCDEIARKPWGLAFNTLMNKVKSSEPVEQCPVKLKSIIETLFPTHPTINTPETDPVPITRQEIIN
LANRLKCGNAPGIDGIPNMAIKAAMLAYPDVFKKRAPPNLSPTINTPETDPVPITRQEIINLANRLKCGKAPGIDGIPNM
AIKAAMLAYPDVFKNVLMNTLTTGQFPSMWKIQKLVLIPKPGKPPGHPSAFRPLGLVDNLAKVQEMVILDRLTKYTEGPH
GLSDRQFGFRKKRSTVDAILAVLEKGIAAFQRKRCGARYCALITIDVKNAFNSASWEEIAAAVERMKIPPHLCRLSRNYL
DGRVLQYDTAEGVKTNAIPAGVPQGSVLGLTLWNVIYDGVLTLALPHGVEITGFADDIAITVSAVSIEEVEMLATDAVGR
IDRSMRDAKLVIAHAKTEFIVISSHKVHQKASIMAGTVQVESTRSLKYLGVVIDDRLKFKSHLEEACKKVMKAINALAAF
TPNIGGPCSSIRRLHANCAISVLRYGAPVWAHILKEKQHQNTVNKVHRKLAMRVTSAYRTISYEAVCVIASMMPLCITLE
EDSKNFRKSRAGESFTETAKKASRQASMRQWQNEWSNSLNGRWTYLLIPDVGAWLDRKHGDVDYFVTQVLSGHGCFRSYL
HRFNRASSSRCPACKDEDETVDHVMFHCPRFAEERLQLNESCRVEVGCSNLVQVMLQHTDSWEAAATTMRLILTKLHQKW
KQDQQLGDI
>WaldoAg1_gag#LINE/R1 gi|28569860|dbj|BAC57903.1| gag-like protein [Anopheles gambiae]
MRIHVPCAVSVLGCAYTQRTKCAACLDSPDGMNGNESLHPRPLGSALKDIGAFFGRSSKTPRSPPNDNVQGSVSPAVDVV
EVMPEEQTSASMECQETSHPIKEQGFEVSASKLQEALMVARELHTYTKDRNNVHAPIKKMSVSILSALSCIERELLTMKL
RAERAEKALREVQSEPPETPMTGKRSRKARTPEEAEDAKRAKNDAPSCNRPDAEYSEGVKNSENGELWSTVVSKKAQRKK
KMGTMAEGKQTRAGEHNGPVKPVPRRPKTEAILVETTEVSTHKDILRKLKADPELQSFGKQVVRIRSTKNGGLLFELKKS
DQTECESFSGKIQQAIGEAGNVKSLGQMETVEIRFIDEETEAADVERDLRNQITGLEGYKVEVTMKTSFSGMQTALVKLP
VKLVSVVTGAGKVQIGWSVCPVRINIPSRRCYRCWQTDHISQDCCGPDRRDCCLRGGEKGHFAATCRLPPRCVLCPDGSN
AHHSSGAFCPAAKKTAPWK
>RT2_pol#LINE/R1 2812-6477 gi|159620|gb|AAA29365.1| (at x removed a glutamine-serine string) [Anopheles gambiae]
ATANVLVRPNDVPGPESSAGEPGHGRDAQNLVLQAAREEKADVLILSDVLRPPENNGRWAFSSCKAVAVVAVGELPIQRV
WCSEAQGLVAAQIGGVVFISCYAPPSLNLAEFERFLEAIELEGFSHPQVVVAGDFNARHEEWGSPRTCDRGEELHGMVEQ
LGLIVINQGREYTFVGNGVALPSIVDVAFASPSIARPDTWVVSTSYTASDHRYVLYTVGGTPPSPEQLQNHQQTAxGDSS
SQRRVRHAGRRWKASQFSPSSFLEALFAADFVQRASTQEGMIAAMLKACDETMQRVTRLHQDPHRNIFWWSPLLARLRNN
CEVARDRMLQTADLEERSIAAAEHRTARAELSRAIRASKRNLFQELIEIAEENAFGAGYRVVMSRLRGSRTPSEADRVVL
ERIISDLFPEHPPCDWSQLSNVGSVEGATTTAGIAPVTDDELLLIASQMANHKAPGLDGIPNAAVKTAIMLFPESSGFLY
QDCLNRASFPAQWKRQRLVLLPKQGKPPGESSSYRPLCMLDALGKVLERLILNRLNEHLEEPSSPRLSDRQFGFRRGRST
VSAIQRVVEAGRTAMSFRRTNGRDNRFLLVVALDVKNAFNTANWQSIASRLQAKGVPVGLQRMLRSYFEDRVLYFDTSEG
PVVRHVTAGVPQGSILGPTLWNIMYDGVLDVPLPPDVEVIGYADDLALLVPATTTDEVRARAEEAVDQVQRWMQQHGLEL
APAKTEAVLISSKKTPPQVTFRVGDVEVQSSRSIRYLGVQLQDHLKWRDHVTKVSEKASRVVAAVTRLMQNHSGPRTAKS
RLLAYVAESVLRYAAPVWAEATQVRECRRMLQRVQRKAAIRVARAFRTVRYETATLLAGLVPICHLINEDARVHQQLLAP
DRAATREDIRATERQNTIDCWQEEWDADALQQDASRHTRWTHRVIPSVGDWQSRKHGDMTFHLAQVLSGHGFFRDYLCHN
GFTSSPDCQLCVGVPETADDAFFECPRFAAVRQELLGEGGPDPVCPDTLQRHLLRDADSWSRICEGAKRITAQLQRAWDE
ERAALAVNVIERQDEDAAELEAQRAEVRRARNERRNANRRAATARRREERRAGLPPTPPASPRTAQRRAALRERQARFRE
RRRNRRLLGMSGQAINNDDDGRERADLAAGPSGMRNRAIDEENEATDGGLNAAEEAAVVEAEVASR
>R1B_NVi_pol#LINE/R1 2369-5506  [Nasonia vitripennis]
MANREARFLQLNCQRSMNVMSDLSECIVNEGIDVCLLQEPYFAHGKVCGLPSGMRVFWSRSGLSAIVVNDLNCVCMLIEE
LVSENSVCVSVKGEYGEIFMISLYSKYDGEIENDIEYLEKVFECLRGKRVLVCMDANASSELWFSKGVYVGKPRGNRGEK
LCEWIAGSEWSVDLLNEPSEWYTFDGPRGQSDIDITLAGGFENECEFTWSVMCEWSLSDHNPIMIRMRMNGGRENEANVD
LRWRMKTNKWSKYTKRLREIAYEFGYGEYVELCAREKVKKMDEWITRVNDECFERVSVHNNKVVWWNKELERMKKNVCKL
RKTYQKMRCKNDERMEESRNEWKKCETQYARKLKEEKNDDWKKYMSTKGNQKPWKARNICIGKRREELASLRKAGGGLTT
SWAETADLLLNEFFPPDDGVPAPEVQELFLDVNDREYEWNEISMAVKKMNMRKSPGMDGIMNEMILRVHRAIPGFMKEMY
DSCLRESYFPNEWKRAKVVVLLKSVDKDKASPRSYRPISLLPGLGKVLERMMVERLTKIVNGRWSEYQYGFRNGRSCEDA
WNKMKESVNASEHKYVCGVFVDFKGAFDNLLWRTIMATLEEYGCGGMDLEMWKSYFTDRRVCMKNSMEEVWKQVSRGCPQ
GSIGGPILWNLSMNGMLIELAGSGVSVCAFADDVAILAEGNTRKEVERVINEKMEIVYKWGEKMGVSVSEEKTVCMLLKG
KYVTSNRAVRVSKTINVYKRIKYVSCFKYLGVNVTEGMGFGEHVRGMKVKVAKGVQKLKRVLRRDWGLRRAASHLVLRGT
FLPQVSYCASAWYEVLKYEYGRNALNAAMRYVMYACLNVCRTVSTEAMQVLTGWLPWDLECLKRANVYKVRKGLSMNEMD
VVKNEEVESMSVIKLERLVDERVYEIWQERWDVSMKGRVTARFIKDVKYAGRSRSFEPDRWVVNILTGHGTLNAFLHKRG
LSESASCMCGDVSEDWEHVLCRCSMYESFRNLDEMGVTVCVNGEYEFTGVLSSNVTYGKMCEFINRAYEMRESVRRRLNL
ELDVNG
>R1B_DAn_pol#LINE/R1 1928-5005 [Drosophila ananassae]
MQDTNMSRLLQINCQGSYAVMCDVGQMMCERGCVVALLQEPYNRYGGVRGLPANMRVFPDSRGRAAVVVNDPGIECTLVN
STDWGVCVGLEGIFGRLYVVSIYCKFSEPLDPYLQYMNAVLLQVSSNPVILGLDANASSPLWFSKMSRLGPGHRNYDRGE
TLAEWVITQDVQVVNKPSEWYTFNSPNGASDIDVTLANEAAMRVCDFQWNVLGGQGVSDHNPIEIVVTRAVALEPNERLN
GWCYRGANWALHGHYVREAATQVPFSTFCAMNVDEQVACVTEWVTSANDSMFARHRKVTRKRVKWWTRELQAEKRSLRSL
RKRFQRARRTNADGVAQLRDQLSTRVHEYKHRVLRVKDDEWRSFVDRNKHDPWGRVYKILRENGKEGSRDICALRVEGRD
LITWKDCVECLLSEFFPREDRQHSVPDAVGDADPLLMSELQWAFTKLRSGKAPGLDGFTGEICKSVWKSIPDHLYELYSK
CVSEGAFPSAWKCTRVSVLLKSLDRDRSNPRSFRGISLVPVLAKVLERVLVERLQESVGSQMSDRQFGFREGRCAEDAWR
SVKDSVRSSNSKYVLGVFVDFKGAFDYLSWASVIQRLNECGCRDVALWKSYFSGRNACVVGVNEVVWKDVARGCPQGSIC
GPFIWNLMMDPLLWQLEQAWQCCAYADDLLILVEGQSRSMIEASASECLRIVGQWGDSVGVSLARDKTVTMLLKGSLSRS
PVVRLDGSSIRYAKQVKYLGVTVGERLRFAPHLANLKDRLVGTVGRLRRVLRSEWGLSRKAARTIYGGLFVACAASGSPS
WYDAVLDVRGRMKILSVQRLILLGCMPVCRTVSTEALQVLFGAVPLDLEIRRRAVSYKLKKGLPLLQDEWLFREMSGGNV
ESLGPSEWKSMLRECVLSDWQARWDNSENGRATYEFIPDVSFVVDRPDFGFNLSAGFLLTGHGSLNAFLHRRNLAGSPEC
RCGSRQETWKHVLCECPLYDDLRDLGGLGVVQAGGDFDFSQVLSTSDRISRLNVFARAVFSRRRMR
>R1NS-1_CQ_pol#LINE/R1 2500-5427 [Culex quinquefasciatus]
VQVIQLNLNHCETAQQLLFQTVAEKKCDVALLSEPYRIPEGNRNWLSDPPKAAAIWVTGQFPIQELVAAEEGFVIAKVNG
VFYCSCYAPPRWSIDRFDRMLDRLTDALTGKTPAVVAGDFNAWSTQWGSRESNRRGQDLLEALARLNVDLANEGSASTFR
RNGVSSIVDVTFCSPSLMASMDWKVDEGYTHSDHQAVTFRICRVAPRPAQPAPRQECRWKTSTLNKEVFVEALRRESATR
DILELDCDGLMTILVGASDAAMPRQAKPRNARTPVYWWNDDIAAIRAASLRARRKLQRARSDEQREARRVIYKIAKATLS
KAIKESKRNCFGNLCQEANNAPWGNAYRIVMAKLKSGAVAIDRSPEMMSRIIDGLFPHHEVEPWPTTPYYHEGLTEDEQS
ITNEELIKAASALKANKAPGPDGIPNQVLKLAIEENPDMFRSALQKCMDTGVFPDRWKRQRLVLLPKPGKPPGDPSAYRP
ICLIDTAGKLLERVILNRLTIYLERGLSDRQFGFRKGRSTVDAIRAVLEKAKIAVEPKRRGMRFCAVITLDVKNAFNSAS
WDAIARSLHRFRVPNYLCKLLKSYFENRVLLYETDEGLRELIITAGVPQGSLIGPGLWNGMYDGVLTLQLPTGVSIVGFA
DDIVLMVLGESQLQVEVRATEAIRTIEEWMGLHHLGLAHQKTEVVAVNNFKSAQCINVRAGNCTIDSKRSLLYLGIRVDD
KLSFNSHVDYVCEKAMKAIASLSRMMGNSSAVKSSKRRLLATVVASVLRYGAPAWGAALEAKTNLQKVTSVYRLICLRVC
SAYRTASAEAACVLASMIPIGLLVREDMRCHELRGVGGHRASARTATMAEWQRSWDDSTKGRWTHRVIPNLERWVNRTHG
EINFYLTQVLSGHGCFRQYLHRFGHATSPNCPNCTGTVETVEHVVFECPRFQSSREILLLGCGTDTTPDNLTDRMCQSEE
AWGAASTAITQIMLKL
>RT1_pol#LINE/R1 4185-7733 [Anopheles genus]
MHGRNTLRQMRWPPCYRGPDMRSVGHPMTQLKVLQVNLGGGRIAQDLVLQTARQMEVDVLVLSHTYRPPENNPRWAVDAS
KKVAVVATGRYPLQGQWSSDVPGLIAAKVGGITFLSCYAPPSLSREGFAEFVEAIELEAQSHPQVVVAGDFNAWHEEWGS
RRSNERGEVLLEASQQLGLLLMNRGNVATFVGNGVATASVVDVTFASSSIAQPSTWLVRNTDTRSDHRYITYSVGPASAD
QQRNQGQSRQRGQRERFQHAGTRFKTKQFSKENFLATLHGEGFREKAVNHQGMISAMISACEKTMQRMTSSFPDPHRDVY
WWTPLIALLRQNCEQTRDRMQQTSDLQNRSLAAAQYRTAKAELDRAIRASKKAAFQELIDAAEENVFGAGYLVVLSRLRG
GRAPPETERARLESIVTELFPQHPPFNWPSISSEEEQEQPADQQTPWTQVTIPELRLIASTMPNKKAPGLDGIPNAAVKA
AILAYTDVFQALYQSCLETATFPAPWKRQRLVLLPKPGKPPGSNGSYRPLCMLDALGKVLEKLILNRLHNHLEDPAAVRL
SDRQHGFRRGRSTIGAIRTVIEAGQSAMRFRRTNGRDNRFLLVVSMDVKNAFNTASWQAIATALQMKGVPAGLQRIVRSY
FENRELVFETSDGPVTRSITAGVPQGSILGPTLWNTMYDGVLDVALPQDCEMVAYADDLVLLIPGIDVNAVKAAAEEAVA
SVSHWMAQHHLQIAPEKTECVLISSTKNPTQVTIRVGDVEVTSSRTMRYLGVTLHDHLSWLPHVREVTTRARKIADAVTR
LLRNHSGPKTSKARLLASVAESVIRYAAPIWHGEVTKRECRRLLERVQRVSARRVARTFRTVRYETATLLAGLTPICLLI
EEDARVFERVNDPGRSITKAAIRLEERQRTITMWQSQWDAEADTSRYTRWTHRIIRDISAWQGRRHGEMTFHLAQVLSGH
GFFREYLAINGFTESPDCRSCAGVPENAHHAIFECPRFARVRMEYFGELGPNPVTPDSLQDFLMGSQDNWSSFCEAARRI
TTTLQRDWDTEREQRAASNREEAEIQQQLQREEDERRTEERRQLHNEANRAYRQRNRRSQPTPPAPPPTPREAARLEDGR
RRVARWRERQRMIRNGGIQMLRALFGHDAWSSESDDEPDDVERGGLDAAQQAAAAEAERAAR
>R6Ag2_gag#LINE/R1 gi|28569872|dbj|BAC57911.1| gag-like protein [Anopheles gambiae]
MADGKGKTAVRRERRKRKKQREAEQAASLAANTPPSASQPKQKPAPAFNPRAGRMPNAIELESIGRFKHAEMMPILRETV
KKEDVQRIRTNFKGHLLLELAPMSHQETMTLWREVAAALDGKAKCRPRTPSMRVNCTNIPPDTSSEEISSEMSAALGVEI
FSDQITTVKTHYGTLVAFFDCPAITVTDQALARQYTVGFSKCCRLRLLERRRQCYRCYEYGHTAARCHGKDRSSKCHRCA
EDKHEGPCTRERKCLGCEGPDAIGHSLGQRSCRYFGKITPQPSHD
>LIN2_SM_pep#LINE/R2 2223-2900 artifically broken from (pro-)pol region in same frame [Schmidtea mediterranea]
REVPASVSISVPISEETDADSTIINYFFPERDPKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDN
LFKAQIILCPLNINESHWILFVYCKLTKISYFVDPILRKRHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNN
YDCGPYICAYAMLISQEWQTFPNNFIETIRKNVHRFQTSKFQNPPKVSGGGITTLPIFKRFQNVTR
>R2A_NVi_pol#LINE/R2 2231-5305, representing gi|2851550|sp|Q03278|PO21_NASVI [Nasonia vitripennis]
NQIKKSNTSTGARIPKAMTNPADNFAGGQWKPPGRRSARTSATGMFVCEHCLRAFTTNTGRGLHIKRAHEEQANEAITTE
RSRARWTNEEMEAVQAEIDCEGRTAINQEILRIIPYQRTIDAIKCLRKQQKYKTIRERVANRRAENRARETELTRLETAD
EDPASQEQDNPNMSLKNWLKEVIESDDDRLCADLRTAIEMALAGQSPLDVCTVGCYQYTMTNLPLVPVRLGGPIYWCNAQ
SRSNPGETQRRQTIKESNNSWKKNMSKAAHIVLDGDTDACPAGLEGTEASGAIMRAGCPTTRHLRSRMQGEIKNLWRPIS
NDEIKEVEACKRTAAGPDGMTTTAWNSIDECIKSLFNMIMYHGQCPRRYLDSRTVLIPKEPGTMDPACFRPLSIASVALR
HFHRILANRIGEHGLLDTRQRAFIVADGVAENTSLLSAMIKEARMKIKGLYIAILDVKKAFDSVEHRSILDALRRKKLPL
EMRNYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLFNCVMDAVLRRLPENTGFLMGAEKIGALVFADDLVLL
AETREGLQASLSRIEAGLQEQGLEMMPRKCHTLALVPSGKEKKIKVETHKPFTVGNQEITQLGHADQWKYLGVVYNSYGP
IQVKINIAGDLQRVTAAPLKPQQRMAILGMFLIPRFIHKLVLGRTSNADVRKGDKIIRKTVRGWLRLPHDTPIGYFHAPI
KEGGLGIPAFESRIPELLKSRIEALGASNMQTARSLLGGDWVAERKKWINTQKIKNSEWAQKLHLTTDGKDLRDTRKAEA
SYSWIRDIHVAIPASVWIKYHHTRINALPTLMRMSRGRRTNGNALCRAGCGLPETLYHVVQQCPRTHGGRVLRHDKIAEQ
VAIFMQEKGWLVLREAHIRTSVGLRKPDIIARKGQDCKIIDCQIVTTGNDIRIQHERKIQYYASNWELRRSAATMIQAWA
A
>R2_PS_pol#LINE/R2 686-3130 [Porcellio scaber]
GGIVRAPGISGEDLARLLHQCGFSAGEIGPNLPRGRARNAPTPEWELNNRVKRKRQKFALTQTLYYEDKSKALDFIMDGR
NPFEAGEPSRAVRDEWREYFETRVDLGRVADGACLRVGQPVDRFPAVGDDITLAELENALRSTPSKTAKGVDGVGLEELK
RVPRRTLFNILNGLWTHVPESLYKGRITLIPKKSLPELAGDFRPICVLPVVVRLLHRILAKRLAIVQHTEFQAGFQSGRS
TSENIFLLRTILESLPAGKESMYIALLDFRKAFDSVNHTVLCGLLRDLGLPERLTGYVESIYRSVHLTLGDDWFVQGRGV
LQGDPISPFLFNLMIDYILSGTQAGVGVGVGERLVSSLAYADDLALLASSRRGLNANLESVLARARSVNLALGINKCATI
GKRWLGREKKMILDREPFLLEGVAIPVYRWNNIYKYLGIETSPGAAARWSVTGLRNRLSKLESACLKPQQRMHLLRCYLL
PGLYYGLIHQGISVGLLRSADKQVRAAARKILHLPGDVPVPLFNEKSALGGLGLVELEVKVPELLDKIRTGLLGRGGLWR
VVADRIKIPISNRERRLLVTEFCDGRGFCQARKRPGCCAWVSNGKLLMKGADYVEAVKIRLGVVSTKERAARGRNVPLHQ
VTCDLGCPRVESLGHILQECPSISNLRISRHNALASRIRRALAGKGWSTVEEPTIPTIPGNRRPDLVAWRGERAMVFDTA
IARAHAAVLNEVFDRKVVKYNTPEIHQWVIGRSRARVVEVSALVLNWRGDMVEKSYVMLRALGLTSAIKFMEVACMEGSV
RSLRFFKQASGRWG
>R2Ci-D_pol#LINE/R2 gi|34392529|dbj|BAC82592.1| reverse transcriptase [Ciona intestinalis]
RLVCTACRGVMVTARLAREHLLTHGFGVATFACGKCTREFSGLSAVSGHYVRCDGSRVTETRLAFVCEFCPRSFNSRSGV
SLHCKSSHRAEYEAVLAARDKRTRRGYHEDEIEILAKVEIGLPPGVRKINIELATLGAVDRTCEQIRQIRKSARYRRCLE
ELRSQGRATSPGRTQSEPEEDRLVSEPSSEIPDEFLNPLPAEELEDLCAVDLSAAMRHLHGEGWPSDAVEQLDVILKRHH
HDVFKRRRQAHNKGQRKSNAEQRYKPSTKRRRAGFASVQRLWDTDRRRLSQVVFDGAKVASSFPDIRDVEEVYFGRFAGG
DEGEVVSDNEPEPKLGGQFEGLSKPFSVVEVSKALREVKVASASGPDGVSVSGMTKIGARVLCMLFNVWQFTGRTPRWTK
ENRTTLIAKSASAAEDVGDWRPITIGSHVVRLYAKLLSRRLGSCVQLNLCQRAFRDVQGCAENVMLLSGMIRDAKARSRD
LNLVFLDLAKAFDTVSHSSIVKALRRQQVPEKFVRIVQDLYDGAVTTVSVGGRATPQLVVKRGVKQGCPLSPLLFNLVLD
ELIDELSSSFGYTLDDGSKLSVMAFADDLVLSSGSLAGLRKLIETTQQFLLRCGMGLNVQNCTSLGWKSMVGGKQVRLRT
EPFVRVGDSELACLGPNSTCRYLGIHFGMVGSCRIRRREIRESLLRLASSALKPEQKVFMLRSFLIPRWRYSVTLTRVTV
SFLSWIDRVVRMRVRAILHAPHNLSSEWLHLSIAKGGLGIPCMVEETWFSKRRLLEAMRDSECPLVRNSREVQCLSDDVE
RLRVKL
>RandI-1#LINE/R2-Dualen 5-10717 [Chlamydomonas]
MHTNTPLTNLASSSLGNMWKMVARRKVERKSAGICVLICFALCMLTTNATTAGNASGSAAADRWFDRGPPRHSSAFALLG
NHDRTMPIQKWSARGLTTCTESSAKGGCSHVCNSRATGAQLPALSHTDGPIATHGINHAHGSVWRENFSFAHSMFTVHSN
PANATLLSDRCSQKGIFDTSILHTTCYTASKRAGAEPFGMSPKRPSQSPTAAKHPSFEELISSKHIPVASEPLANDVPER
GRAEPPVFTANSQLYENASLLTEPPPTSSERRQYRSPSGLLSRAKVKPKPGCTNIRNVMITALQPVGEGLLSTNLKIAQA
CRSGVTKLCTAEGAYRSYATKTIGLLGESLLTSVLALGDLGSRHGGTMLRSGASALHSMAETAYGPQPTLNCSAPWENSP
LLRLHLTLVVHFHWAGAGHVRAAMHSHTIAIRVGAHLATRSRLAIYQTAAQTGKALHTILDKAIVSLTIITATGAMYMLW
THLLHAETRTASVNSEICANGAILSLLLWGPTLTTLALSPLCVIALALGITAIPAALGLLFALTVTSILAVLCLPALLKH
VVQVTRQIASATWARRKLLLWGTAMAIILRNLYLTLPDPCSVQPAQPALWGPALVTGLLTASQATTLLTLTYAVNRTHTM
PYVKPTLRGALPTDPTAPPAPADPRTHAAVNIRPPAALHWPPNPNTTYRETQRQHFCSVHALNNSLGLAWLDPLDVLSYA
KRVHAHLTATQDPNALFWKECYCPNSGAFSEFLLNHYLYHNATISNIFAYPNRKLIMRRTHFPRLNGDISKEKVLESLPV
AARTRGFTVHQYTVRHTIAVRYEAGQWRVIDSVNSPIHNTVLHDNTWNTLDGEVWCLDAVRASDTATLQDALGQLREIVP
PPRPPPHMEATRPVQTGPAATGRPAPEPAQHAQDNSPLRAAHRAPQHAAPHTTAPAQPHNANAGIAPRLNTTGTRQTILN
WLVRPTARNHAHMEPNQAHTNTRPPSSNTTLHIVTHNVRGLLSEILSTGQPGNLSFTLCNLAQWKADIVVLTETKLTGKT
DSIKRAFRNEGYRLYCSTTPRVATARGSAGVAVAISARYSDLGCVTHHTPPPTLHGYVSHVQIKTPGSTPLTVLGIYAPE
DMQTRKAIYTYCQQVVGRADACGHHLVTAGDFNAVARAHERDSPIDTADRAHQRFLADSGLRPIRGDTTTTAEWSYEQTR
PGMAPYHSRIDDILLCPATRAACTEAREYTSTVAGNFDHKPVHAELLAADLQLWPAPQAGARNPAPQQQTQQRWAEVALP
VTQKQLAAAAIRLEEALVEATADLHSATRQATQSIEHALTRHSMDPTGYPASVMHRDLAQDTSIQKADINQLAEQLASAL
DTGLTCLLEECTRKAPFTGKHHASRSTARVLKPLWDKEVALKTQLTNLTQGPQALPEVDAANAAAKLRNEIKACQAEHRQ
LVADRAKAQREAAATALQHTLATRPAQGHKRIFQKEDMERGLPAVRNPETGEVTTDSTSILAILETHFRKLSAPPRGTRT
GDFRLPSNATRGYPFEKADATDQFTLDRNRHPDTHSMLPSMADTANFEQCISHLSRNKATGPDGIPNELLRILPSGMKRN
LHCILQIMYVKSQIPETWAASETVLLPKPGDALDIKNKRPIALANTCYKLYTSMLTLGIGELAGPLQLFSEAQEGFRAYC
NTERQVLNLVHALEDAALFGKDVYAVYVDYSSAFNTIDQDRLLQIMFDLGLPTDLIRAVRNLYAHATTRIRTEHGSTSAI
PIERGTVQGDTLSPVLFILFMEPLVRWLHAGGRGYHYGCLTPSENLQYHCSAAAYADDLAALTNSLDDLQVQCDKIASYA
EWASLRVNHTKCATTAIWHDKSRSDPNLDGPTGKATLAAMRRNMTNTIKIGTTPVPYFPPTQPYKYLGVQLTFSLDWSAH
VARVTEIVKDKGTAIATSLATPAQRLRMIQQCVHTTVAYGFAAMPFTKQDITTLDTTLAGFAKRCYGLPRSFPTRTSLLP
ANEYGLGLGSLLPQYARVAQRALVLALNDSGRLGIVTRALLPRQASIAGPTQAHLLPAHRSHHLTTLKQMTLAKEYGVTL
YQNGSAFTAPTWSIAAALEAEAEARGVEPLPIEYVLPLADLRLELSHLVDRNTGKHLITSSDLEKHMGASRVRHKHKVAL
NRLSLALSMAARAGENAPAHGSPAPLTTAQRALPDVAAIVALAMRADPLPLGMANPLDRYLQPLPEAPPAQANTTQAPAD
LAPPSPAGAAQAHPGAQGAAAPEVPADGATQPSLRPPARARKPATTRRPPQNQTRARRVTKHAAQRARIAETTRTTPEDL
LTGDRAAINHALRLTNGDESLPVGTRGYETACSVFQALAKDMTGHMRICHPHPQDPPSLAHAVEPRQQRRGLPPALTSRL
TANAANPEPNAISEYLNNTGLPMEVNQAAAHNDPMDADSPTPPLTAPAAQAAGGHGARPSWRLARARITHDLVPRPADNR
TNGDTQLTYDLDNDGQELAQVLHSENKQTVTDKELTRKRKAREDTSGTREKYWKVQWKPSICPAGIVSAFVRMGYATIQN
ARCYKHPLATRPGPQPAQTEAEPPAETQAHAISPEEPAQAAEPAAPQPTGAPLFSSWTTKLLRHVTWAPSTDRERDLKHS
PQWEELLEECKTRLANGTNQGPRPRTVRPAPDRNLTARQRQGRHDAEPLDTASRARDIRTTTTITTSPCNPYKDIVAPGA
YTITTTGGTRRDPAEAHVHEPSGRWLGTITYPRLLTLWERFRHTGNQRPNAFEEAVAALIMRYRYDPAQQDRKAMPMHQV
SLPAGTVAAIVQCLRVTQAVHIREMFASPLNSSTAAHEYWTRDPADGAFGALHDAYQTAWTGLQYAHPPSTPHDARKALM
WALACAEAMRDSQEPTLTVLALPKAATFPHTQWLQHPLCHELANWSAGTAGLDTGLGTNTQAERQKGLRLVIVGNPAGLQ
CFAPRLKRLVDTLKRGANAPTHISDPRTWTHTATAPTCPALPNSLLKQAKYQHANPKTIHAMADEARRFPNARFQTHHAL
AHDVNGTVWTDGSVSKIKTDNGKEVQVAGACAWFSDSRVVYVNPNGAGCTNTITRAELAAIRAALAEFGGEGKEFATKKL
TIASDSVASLYLIKRAINEPRRLHLSKHRDLLDSVVALLHARHARGAPTALIKVISHTGLHGNEEADKGAAAVATQEKPA
DVSEPADNDPHARHWWPTFTVTRDDDSTATHYVSDLNRGLTRAMAPSCRGGYANKTLYTEKWAEAAPSLDPRASNAYMTN
SDASHGLRRFIQNARQGGLICPARLALFKLRDSDKCGLCAHTQRSRGSDPERGTAGHLAGHCAHPQLVGARIAKHNTAVR
TIAECLHHGHNGGGYMIMDATSRAELPEYCAGMRPPSWLCPQVPAADLNRMRPDILFIPNLPRSEAERFMTSPPANKGAY
PVYILEVGYTSDLHHSEKLIQKQAQHATLATAMRAAGWTVHYDTKHVITLGHGGTVPRTLETLLKDLGAKPQAAKACCTR
LHMHSVTTLRGTANLYYRLEREMGIANTRCRPGGRTQGTANGGPRAGEPG
>R2Dr_pol#LINE/R2 gi|34392533|dbj|BAC82594.1| reverse transcriptase [Danio rerio]
MESTAKGKSYWMARRPVEGATEGSLGRVPFVTRDPKRKPEAKRTLTHGLGLRECSVVLTRLIEGRRGRDHTPSGWNAQRG
MPNDESSVEEPNGPIPSNPIPTGTQALPEPMADGEQGEHPGVVVTLPLRDLNCPLCGGSASTAVKVQRHLAFRHGTVPVR
FSCESCGKTSPGCHSVLCHIPKCRGPTGEPPEKVVKCEGCSRTFGTRRACSIHEMHVHSEIRNRKRIAQDRQEKGTSTDG
EGRAGVERADAGEGPSGEGIPPKRPRRARTPREPSEPPANPPILSPQPDLPPGGLRDLLREVASGWVRAARDGGTVIDSV
LAAWLDGNDRLPELVDAATQRTLQGLPAGRLARRPATFVAPNRRRGRWGRRLKLLAKRRAYHDCQIRFRKDPARLAANIL
DGKSETSCPINEQAIHEHFRNKWANPSPFGGLGRFGTENRANNAHLLGPISKSEVQTSLRNASNASTPGPDGVGKRDISN
WDPECETLTQLFNMWWFTGVIPSRLKKSRTVLLPKSSDPGAEMEIGNWRPITIGSMVLRLFTRVINTRLTEACPLHPRQR
GFRRSPGCSENLEVLECLLRHSKEKRSQLAVVFVDFAQAFDTVSHEHMLSVLEQMNVDPHMVNLIREIYTNSCTSVELGR
KEGPDIPVRVGVKQGDPLSPLLFNLALDPLIQSLERTGKGCEAEGHKVTALAFADDLALVAGSWEGMAHNLALVDEFCLT
TGLTVQPKKCHSFMVRPCRGAFTVNDCPPWVLGGKALQLTNIENSIKYLGVKVNPWAGIEKPDLTVALDRWCKRIGKSLL
KPSQKVYILNQFAIPRLFYLADHGGAGDVMLQNLDGTIRKAVKKWLHLPPSTCNGLLYARNCNGGLGICKLTRHIPSMQA
RRMFRLANSSDPLMKAMMRGSRVEQKFKKAWMRAGGEESALPRVFGANQYQEGEEVANDLVPRCPMPSDWRLEEFQHWMG
LPIQGVGIAGFFRNRVANGWLRKPAGFKERHYIAALQLRACVYPTLEFQQRGRSKAGAACRRCSSRLESSSHILGKCPAV
QGARIRRHNKICDLLKAEAETRGWEVRREWAFRTPAGELRRLDLVLILGDEALVIDVTVRYEFAPDTLQNAGKDKVSYYG
PHKEAIARELGVRRVDIHGFPLGARGLWLASNSKVLELMGLSRERVKVFSRLLSRRVLLYSIDIMRTFYATLQ
>R2_LP_pol#LINE/R2 856-4347 gi|3559772|gb|AAC34904.1| reverse transcriptase [Limulus polyphemus]
MFGYARASGSTSVSIQSSSMTEGETNERATPRASDSSSVSIQSSCVTEGECLPPTDNCNPSVENQLPCVTEGRFERVGSL
VTVRLPFRKVACDLCSKEFLTYSKFAVHQANFHNSETQACCTYCGKSDGNHHSIACHVPKCPWRRTVTFAANLSNFLCDL
CNDSFKTKSGLSQHKRHKHPCSRNAERILSLGVRTPSARPRQVVWSEEETRTLREVEVVYSGQKNINVLCAGHLPGKTSK
QVSDKRRDLHRIRSSNVHGTPTTQSRGDPVEQVEEYEELDWEGMHPFPDPDSKFCSYLDQLRDQKGLTEPVWQEIEIVAQ
EWVENLAHVQSSWNHERTTKQVPENNTPARRPFKRRLHRVERYKRFQRMYDLQRKRLAEEILDGREAVTCNLKKEEIKDH
YDQVYGVSNDRVSLDDCPRPPGANNTDLLKPFTPTEVMDSLQGMKNGAPGPDKITLPFLQKRLKNGIHVSLANVFNLWQF
SGRIPECMKSNRSVLIPKGKSNLRDVRNWRPITISSIVLRLYTRILARRLERAVQINPRQRGFVPQAGCRDNIFLLQSAM
RRAKRKGTLALGLLDLSKAFDTVGHKHLLTSLERFAVHPHFVRIVEDMYSGCSTSFRVGSQSTRPIVLMRGVKQGDPMSP
ILFNIALDPLLRQLEEESRGFMFREGQAPVSSLAYADDMALLAKDHASLQSMLGTVDKFCSGNGLGLNIAKSAGLLIRGA
NKTFTVNDCPSWLVNGETLPMIGPEQTYRYLGASICPWTGINSGPVKPTLEKWIANITESPLKPHQRVDILCKYALPRLF
YQLELGTLNFKELKELDSMVKQAVKRWCHLPACTADGLLYSRHRDGGLAVVKLESLVPCLKIKTNLRLVHSTDPVISSLA
ESDGLVGAIEGIAQKAGLPIPTPDQRSGTYHSNWRDMERRSWERLALHGQGVELFKGSRSANHWLPRPVGMKPHHWVKCL
AMRANVYPTKRGLSRGNLSKNKDSAKCRGCTSMRETLCHLSGQCPKLKSMRIRRHNKICEHLIAEASFKGWKVLQEPTLV
TDNGERRRPDLIFHRDDKAVVVDVTVRYEISKDTLREAYASKVRRYGCLTEQIKDLTGATSVVFHGFPMGARGAWFPESS
DVMADLNIRSKYFEEFLCRRTILYTLDLLWKSNNEQYLERLAP
>LIN3_SM_pol#LINE/R2 3139-7029 (probably pro-pol) [Schmidtea mediterranea]
RSLPPTLKAIETITLTQEKACVSTLLKKWFENNLEVMVLSPELTINLIAQNNIYIVDHVAFKQFKGIKIIIGIISNDNYW
CLFLCSVCLGFSYIFDVRSSQNINGRLLGIGENITDYLNKFILEKTIIFKKSHTLFRFAMFSDDPIHHATTFILFLEEFI
SGNVVNRDKVIEKLVNMQSKMCDEVVVNLNLINCKITENILTNFFINLNLSENFIFLNNTMTTAILDDCTQYLNEFLNIE
NLMKAKIVFAIIAPPKARQILMIIDYNSDEHYLLNPSSLLPNFPYLCTANSLLTKINEIKETPELCKLLGNCPHDIRGSG
LVSRILICAFIKHYALDLSLENINLRDIGNVIKSLLPTVQDIIKDSIKNLPDNKTNVKLKLDQRILLINENLLTLQNASV
NEISNFIINEIRIRKETSVTKISRPYLGNKISKVPPPKTNFKSSFNQNMKTTVYNILVNDEINERPTIKDHISNFSHQDP
LIKSYDNVLNFGLKSQNTLLLRPIIDKEVIFELKRADNTSPGIDGIKYNDIAILDPEGKLLTLLYNKIITENTMPDVWKS
FKTLMIPKPDKGDKYNLISSWRPIALLSVVYKIFASILARRLTSWVNRNNLLHIGQKGGSVHDGCVEHNSVLSSCLEHSK
YSKDTPIIIAFLDIKDAFGSVPHDYMWKILRHIGVGEKFTNTLKLLYTETSSYYTCGPIVTPNIPIKQGVKQGCPLSMIL
FAIAINPVLQAVTLSKVKPFKIGESSIQVLAYADDIALIANNTHDLQNILNIAFDVAREIGFEYRPEKCAYIQLPNVDTI
SEISINNIKIKKLLSKEFYQYLGVPIGEQPNQSPYEILNKVVSDAKKLADSDLCGWQKLKAYKTFLHSRLTFPFRTREIK
ISALSANVCNNTTKLRSHLRKMMSLPNNSEISYFYNSIENGGASCTDLLDEYHTQTISHFFRLFTANCEFTKRINIDSLK
FVTGPRLGNNNPSLQDSFNWINKADIIQKHSGKKTRFFRPRTAIRFFEKTHNITISFEVLDDKPILRLTTALKGTIILTE
FDRRLVSKVLHLALYDSYFTKWKNSNISNSSTFYLSPNINRAIFKGELREDHWKFIHRARTNTLANFAKPYIKGENRLCR
RCHNQDETLPHVLQNCKVHLTLALNRHNDCLQQIVHHLKSPSLIVVVDHTCSLVSNSKERVDLIITNNEKKTILMVDIKC
PFDSLVTFETVNKENLAKYDSLKKQIQAAKPSFTVEIFTCIIGSMGSVPPASYDLLGKMGVPFEKVAGLVKACAMSNIAN
SSRKWHYHVTGVLKSQ
>LIN2_SM_pol#LINE/R2 2901-6776 (probably pro-pol) [Schmidtea mediterranea]
PPKVALPYKASLQNENSCVPSLIKEWFSNKNYITVLSPELTLNLIAHNNQFIRENVTFRQFTRVKYVIAVIPNNPHWCLY
IFSPVFEHSYILNFQGRVLNERLVSIGESMTDYLNKFFISTAKVNFIVNHNQTHFSFRSEDPHFFASAFIEFLERFFFGN
ILSFTKINETLKSFKLQITNEICKNLNLINFSINDEIITKYFKNLNLPSNFIFLNSAMCTAIMDDCTRYLNDFLNYDNII
KAQVIFAIVAPPKFREILFIIDYNTDEYYLLNPTTLLGNDNYLSTCKILRNKINEIRESPNRVLNLGECPHDIRGSGLVS
KILFCSYMSNYANDLPLVGLNLRQIGNVVSSFLPIVSEIKKVKSLENNIINQNHKESENLKERKNKIDQLLIKVFKMNVD
EIVDVILDQISIKTVPTHKPYLGNKERVESQINKSNLIKNFNSDMKTTVNTIINDVDVDVRPKYENIITNFEHKIPLDRT
WDKVFKFCNRSDKKLKLKYLSNSEVLFELKKADNTSPGVDGIKYRDLVMLDPEGKLLTFLFNKIISKKVIPDSWKSFKTL
LIPKPDKGDKYDNVSSWRPIALLSVIYKLFASCLANRLTFWINKNNLLHIGQKGGSRHDGCVEHNSILSSALEHSKYSKN
SPLAIAWLDIKDAFGSVPHAYMWSLLRFVGVDEEFVTILERMYSDTSTFYSCGPILTPNIAIRQGVKQGCPISMILFALA
INPVLEAVSRSKCEPFMIGESAVKILAYADDIALVSKSAYDLQRVTNIAVAIASEIGFEYRPEKCGYIELPLIETESQIL
INDIKIKKLASSEFYQYLGVPVGEETDQSPYDILKKVVSDTRKIADSDLLGWQKLKAYKIFLHSRLVFPFRTREIKTSAL
AKSNANNNLTVNITSQLRNCFRKMMSLPNHSEVCYFYNSTENGGANCVDLLDEYHTQTITHFFRLFTSSCEFARKVNLDS
LNFVAGPRLGIINPTLQERFDWINGKEPKPRHSGKKTRFQRARIAIAFFKKEHDINIMFIVTKGQPSLFITSEKRGTFIL
TPDLRKTTSKVLHMALCDSYLSKWEKSCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGNK
RLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFL
VDMKCPCDTINNFALVDLLNLQKYDSLKMQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLKDCAL
SNISHSARRWH
>LIN7_SM_pol#LINE/R2 2500-5810 via tfasty with LIN4_SM_pol, 1 frameshift. [Schmidtea mediterranea]
SQHLIKAFVYTFAIRPSTIYIDPITCSALIQCNYKTFFETFPFKDFADWNEIFMPIYGKNSSSWSFFFLDKRRRIAMIID
PTADDSHALHFDLANDILRTILNIENIFGKLKFGLTEIEYPICREFGLSSLYVCHFIQCLILGSALTIPDVSAMRILMRP
IINKYNCTKFQDNDARKYRILIDDLVYQLDLDTITCDETLCEIERINGRLNPEKYFKKEKPKSDIIHLRFKKSAELLCVK
RLRFQANQRQEIAKIWEDDGIEHRPPINAFLKTFASSECPISDTKSITLPFYSDNESNLTTDNENMSHVMKQLDNTAPGM
DLITVADWKIISPKHILITAICNNVLRNGVCPKKWKLFRTVLILKPGKKDESFKTSSWRPLAIMDTAYRIFATLLNNRLL
TWIKKGNLISQNQKAIGIPDGCAEHSATLHLAIDHAKRRKKELHIVWLDITDAFGSLPHDLIWYTLEGMGMKKETIYLIK
ELYRDVSTFFDCQGMISESVNITKGVKQGCPLSMTLFCLSIDYILKSVLNDCPFHLHDMNISILAYADDIVLVSDSFTKI
EMALRRTVRLASHANLRFKPSKSGYLSINNNNHDIYKLYLYNEEVPIISNENKYKYLGIDFSHKQNQDIDGRLQSALALT
NSLFKSYLHPAQKLNAYKTFIHSKLIFSFRNCIIGHRILDCDRNRITQGREKQLGYDQKIKALLKTMVGDKFHALNNYFL
YTHCKLGGLGVSSSIDEYLIQSVTGITRLFHSYNTDFREMMMKELAHARGEENFEAALKWINCEIDKPFKNASFFVKFQK
SVYALKRKFEIYIKLKFEDNSFKLEMRYKNRISYIGYRNLRNTLSKDLHDFVGLHYAEKWYEMRVQGHIGNAIGDSITAK
YLIASDILNDAQYCFLVKARNNLLNLNYNAYRLKFSLDTMCRLCHLDAETQAHVFNHCLAKPNARRIKHENVLISIVAFL
EKIGFEIDVEKSPKYISVPTKLKPDMVIRSNRNKEIHVLDLKVPYDSVEGFEKAREDNYVKYKDLAIEIGKAFGEKATIS
AVVIGCLGTWDKKNNAPLSKIGLSKPEIVSLARIACSKAVIACYHIYREHISYTKSTMALPFSI
>R2-1_NV_pol#LINE/R2 196-3214 via tfasty with R2Ci-A_pol, 1 frameshift. [Nematostella vectensis]
MDILNCPDCDFIAKNKGGLTNHRTRMHNFMKTTSPEVGDFPCRDCDRRFKTGSGLSLHRRRAHPDIYHSENLPFSRVKAR
WSREEIILLARAELQAKEAKISVGINKILADQFPERTLEAIKGMRKQNRYIEILNQIRDESICSLLPSRAVNADDVSSDN
ISFTEVPDDTEKEPSPSGGSIPPCPPCWKSCLLENIDIKRLAVESLDVIIPGCPDDACRALIDLEFVSWLEPTVSWLKII
IIIIVASLIVRKRKRSIVQTIIIPITLKGPLTTGGEFNKIQHLWSKNKSSAASKVLDGSWAVPDQNCKIYSDVMFTTWSN
LMKVPSVEDKRSPVAVGPVLWHLLSPISLSELKAALSGNSKTAAGPDKITSNDLRGLPCEDLIAHFNLWLFAGTQPSDLC
LGRTIFLPKEISPDDALLFRPLTVASVIIRLFHKILARRFESSLPLDQSQKGFKKGDGIAQHVLTIRSIIEGAKRDLKPL
HMAFVDVKKAFDSVSHETVVIALQRLGVPSPLISYIRDLYNRSSTILEFAGCRSDSVGVTRGVKQGDPLSPLIFNAGIRG
KSASLSIVIDGKAKKWVVDASPFLTAGSQAIPAVKASGDYKYLGILIGANGAKQRSALADVLNQGLSNISRAPLKPFQRL
TILREHFIPQFLHQLVLTPVFAVFLRWFDNSIRSAVKSWLKVPKDTINAFFYARIADGGLGIPLLTSKIPLLKKSRFENV
FNACDAISKALSVDLYFRSNLEKWSKPVVVDGFPISDKSSYNAAFASALYSKIDGRGLSECNLCPEASNWVLNPPSFQSG
RKFIGAIRARAGVLYSKARAGRGRPGFDTSCDACRRPATAQHMVQVCPRTSGPRICRHNNVADFIRKSAEKVGFKTIYEP
AIRDPILGLRKPDLIIFDDNHAHVIDITICSDQVSPNTAHAQKVEYYNHPAILNWVKRTTNVATASCSAVAANWRGVLAS
DSVAFLRSILRFSRPKLSLLSLKVAELSSEIHAFFSKSTYRVGMG
>R2-1_DWi_pol#LINE/R2 150-3314 R2-2_DWi_pol near-identical. [Drosophila willistoni]
FERRSNSWGYRPLEPRSVGTESNNNSPRSNITITSATSRPGDQPREAIAVVNLAGEIPCAVCGRLFNTRRGLGVHMSHQH
KDELDTQRQREDVKLRWSEEEAWMMARKEVELEASGNLRFPNKKLAEVFTHRSSEAIKCFRKRGEYKAKLEQIRGQSTPT
PEALDSITSQPRPSLLERNHQVSSSEAQPINPSEEQSNWEIMRILQGYRPVECSPRWRAQVLQTIVDRAQAVGKETTLQC
LSNYLLEVFPLPNEPHTIGRSNLRRPRTRRQLRQQEYAQVQRRWDKNTGRCIKSLLDGTDESVMPNQEIMEPYWKQVMTN
PSTCSCDNTRFRMEHSLETVWSAITPRDLRENKLKLSSAPGPDGITPRTARSVPLGIMLRIMNLILWCGKIPFSTRLART
IFIPKTVTANRPQDFRPITVPSVLVRQLNAVLASRLASKVNWDPRQRGFLPTDGCADNATLVDLILREHHKRWKSCYLAT
VDVSKAFDSVSHQAIIKTLQAYGAPTNFVSFIEEQYKGGGTSLNGAGWSSEVFIPARGVKQGDPLSPLLFNLIIDRLLRS
YPREIGAKVGNTMTSAAAFADDLVLFAETPMGLQTLLDTTVGFLASVGLSLNADKCFTVSIKGQAKQKCTVVERRSFCVG
ERECPSLKRTEEWKYLGIRFTADGRARYSPADDLGPKLLRLTRAPLKPQQKLFALRTVLIPQLYHQLTLGSVMIGVLRKC
DRLVRQFVRRWLDLPLDVPVAYFHAPHTCGGLGIPSIRWIAPMLRLKRLSNIKWPHLEQSEVASSFIDDELQRARDRLKA
ENVQLCSRPEIDSYFANRLYMSVDGCGLREAGHYGPQHGWVSQPTRLLTGKEYLHGVKLRINALPSKSRTTRGRHELERR
CRAGCDAPETTNHILQKCYRTHGRRVARHNSVVNAVKRGLERKGCVVHVEPSLQCDSGLNKPDLVGIRQNHIYVIDVQVV
TDGHSLDQAHQRKVERYDRADIRSQMRRFFGATGEIEFHSVTLNWRGIWSGQSVKRLIAKDLLIAEDTKLISVRAVNGGV
TSFKYFMYCAGYTRS
>Polinton-2_AMi_6p#DNA/Maverick 7926..8594[Crocodylidae]
MDMRWKHPFSVILAGPSNCGKSYFIKNLLDNADSLLSPMPENIMWCYSCWQPLYKELLCKYPFIKFVEGVPQSLNDDCLF
PPNKVNMVVVDDLMDSACESGEIEKAFTKYVHHRNLSIMYIVQNVFCQGKRSRTITLNTKYIVLFKNPRDKLQVVSLARQ
MYPGKTQFFLEAFEDATKKPYGYLVIDLNTSTPEAFRLRTGLFPPDHLAVYTLKKAVGGNKKR
>Polinton-1_XT_pro#DNA/Maverick 4026-4574 [Xenopus (silurana) tropicalis]
MNNLEITHIMKSDAIAQRMFMGVFPCDLLPRHKVQQKPAAYIVNTDNSQQRGRHWVLIILCDNKNSIFFDSYGLSPENVV
FPKDFIQFLKRNSTRITYQNRQLQDTVSSYCGHYCIFMLHHIARGVSYKNVLKFFNSDFKRNDRIVKHFVKKRMLYLTFR
LRQCCHNNQTCIPYCENTAMICN
>Polinton-2_AMi_9p#DNA/Maverick 7926..8594[Crocodylidae]
MSTVGSLLKEIYYTPGAAGSFGGVNSLFEAAKSQNKNLNRSQVTAWLSDQDAYTLHKPARRHFKRNKTVVSDVDAQWQAD
LVDMQQFSKHNSGFKYILTVIDILSKHAWALSLKDKSAGEISKAFKSIFSMGHMPEKLQTDGKEFLNKPLSKLLKEYNVH
HFVTNNEVKAAVVERFNRTLKSKMWRYFTAHNTFRYIDVLPEFLKSYNHSFHRTIQARPVDVNSSNSPCMWKTVYGDYFK
TKTATPLFRKGDHMRVSRTKGRFEKGYEQTFTDEIFIVDEVIK
>Polinton-2_CI_px#DNA/Maverick 9895-10638 [Ciona intestinalis]
MTQDFYITLPSNASLNYFPNNTLTNYVTRLSKSINLEGTWVVGLSEVTFPFSWYNVSKKASRGLKVKQRVGGITGIDISP
GYYESPRLLINNIASTLRGVNFTDYIQISYIPITGKASVAVAKGWYFEVTEPLKQMLGFRKKRLGYGYHESDKVCDVNLD
LSTLYIYSDIVEGRAVGDTLAPLLGIVSVKGKYGKAIYQRFDKPSYHPIQNKNFHTIEIDLRDSTGDPILFERGRVCVTL
HFKRVNKI
>Polinton-2_CI_pw#DNA/Maverick 10645-11064 [Ciona intestinalis]
MHQHRRVYCCDDTKDLYVSHYLNQQVGDGLPVFAGADVQRGHGLGNILSGIGKAVLPLLKTGAKAVGKQLLKSGVGFASD
LVGGTSAKQAAINRGRELGRNVLHMTSNAINTSGSTGIKRNRASKIKSNKRRRKSKDIFL
>Polinton-1_TV_ptv6#DNA/Maverick 19400-17763 [Trichomonas vaginalis]
MTTNYLVPNTKPINGNVFHSFEKINEIFAKNDGRRYYRELESSCYDSDTPYFDDKQTHLRITNPAHDVNQLGDTYIKRKV
KATLVSNKAFTCDAAFKCMRLFVGYKSSNQSFKQLEVETERGDAGYLQMDCARESFAFATYKPKSERKVKKFVHSLYNNV
QKYDNSVCGKYIDPSEVFKKANEEVDVTFDMIIPVNDLLAFQAFDDYPKSFGDIILKYYVFRDTLVFCQVDPLRVADLQN
YVYEKITDENYEKIMNHVYKYDRKFQQIGLPAKLITSLAATSADATVDDVIISCTKMEVLEDKCITPGYGLIEESVKAIP
RLFSKEDPFMIPAQHIDVRSLNGGCITPEGISSDFSYALHNVTDVVLTFPKNAMQRTVLENPMLRGLQVTIDSRNFPDQA
MTTVGDIFFTRMLQASDLDGVNECTEEYEDSLTRPLNADDGTPLARTWKDQTSFLCTIPVQRDGAGIFFDGLETFNSQVT
VQVKAYPIIQGENDTYCSKVTNPPQVWFTRTTYWTWTPDEGLKYHPTGTPPQYRSSYDEILMNRNV
>Polinton-1_DY_pw#DNA/Maverick 9891-10357 [Drosophila yakuba]
MVKSYQDYYVNQCGAGLSNIGTLYVTPRIIQQGRGIGNFFSGLFNYIKPLFISGLNAIKNQAAETGKAVINEFGRKPLRN
IIQEQSKIALQNLSNKAINKMTRFQNGSGKRNKKRGGRKKRNHLTSKRQRKHTQPSHKXKKSSRKLNITDIFSNTX
>Polinton-1_DR_atp#DNA/Maverick 9048-8383 [Danio rerio]
MREMVDFDFRLQHPFSCVISGPSNSGKSFFVKMLLENAVNMISKKIDNVVFLYDCWQPLYDELLKLYDIKFIEGIPQSLN
DDHLLPRDKTNLLIIDDMMKEASGNSEIEKVFTQYVHHRNLSAILIVQNLFVQGKSSRTISLNTNYLILFKNPRDANQVA
VLGRQMYPGNTKYFMECYQDAVKSPFGYLMIDYKAKTPEQFRLRTGLFSDRQVVYLQKKRRS
>Polinton-1_NV_px1#DNA/Maverick 5053-6123 [Nematostella vectensis]
MYMDIANAKKHIIPKIEAGKMVRIVREAIKETGRIKQDEYEGQKEAFKPLVEKLDKEIEEISDLREKYVDSMSRPIVYPE
RPAITDGSETAASKVVDLDNGFTDDDRKILSDAGLPLPSVVWNRQMRDDTTVSKMLDISSKLNQDLGRKKGRLSGTKKSK
EKHADVISDFTRRIDVIKRYRDRLGSFGEGEKMAKSGKGLYNQPKRNAYKISQNGRYGTLKIDVPKLMGHLRLIAHKDGQ
KVYDKRVDFDTIDILTKRFNGSKKYSDLSRMVFNELNELGELPIHRTSKKYSKIGSGVVYYNDPKDLLSRLELLGGSIQA
GNDSVKGEFSEVAHVLRRLGVISNDQLGELLSNYLV
>Polinton-1_TV_atp#DNA/Maverick 17735-16911 [Trichomonas vaginalis]
MDLNSSTPYEELAGVYNTYVDDMINEALSDNRNALSKEKLMKIPYSECYLNSITAAIGKQNKGKTLTILKQIIIIANTSP
HSHVLIYINRSGSPSDDTFESLKHLIKIPIIYLSQEEAEDYLKNFLMYKELYNTIKKQGLEDKIIDKQRDELFETLSISN
FDREFLHSLIFLDDAVKSKLITNEKSYFNQLLTQCRHIQCSFFMAVQYFKALSTNIKSNLSTLFIFSGFSRQQLNVMLYQ
VNLPMSINELYTQYQQLGEHGKIIVDLNKGSVKFD
>Polinton-1_SP_pz#DNA/Maverick 7982-7233 [Strongylocentrotus purpuratus]
MEYTKKMTLVPEEMARAVQASMGSAHPTSRVLSKLDESIQSILQSSGVSDKDKVVQYHEALQKYLQLQHHEARPTSIHVK
MTEQPPLESIAQDAPSQSETEHTGSMREQVLKTLPVTLKHKAKLLMDHVLKKPENELWGWNTRGELVFNGRVIGGSNVID
LMYDVLKDRNMAKPMGWQYFLQVLRDANVPETLILNKDRREILQHIKLKGASATNSPKVLPQTPPIITTRSKIHAPSKKS
KKPSLKWESF
>Polinton-2_DR_pw#DNA/Maverick 4680-5147 [Danio rerio]
MVYFNNRNMDAERYVSYYQNQAGNGLPGYAGGGVMYGAGLGGIFRGLFRMAIPLLKRGFSIAKPHLKSAAKNILTDVVSN
TLSRTINNNTQDGSGLMVMARRHSSKPPGVRRSGHTQKKRKRAPKKTPVLKRKRKEPGKRTAPSSKKKHKSIKTIF
>Polinton-5_SP_py#DNA/Maverick 2719-3690 [Strongylocentrotus purpuratus]
MSLLHEKSDACCKSELDLFTVPHTQLSITKGPFIEYHPVSNITDTGPIEFNVAGTAEEYVDLSQTMLQVSVRVLKADNTP
ITADDPVAPVNLFLPSLFSQVDVMLNEKLVSQPSNTYPYRALMETLLHYNKETKDSQLTQQLYYKDEAGKMEVVNPLLQG
EHGNQGLAKRHGFIAESKLLSMLGPIYADVFFQERLLLPGVDLKLKLNRSKDAFCLLSSKANAAYKVKIESAALFVRRVK
TSPSIMITHAKALEKTTAKYPLNKVDVRSFSIPTGNMSINRDNLFLGQLPNRIIIGLTDNDAYNGSYAKNPYNFKHLNIN
YISE
>Polinton-5_SP_atp#DNA/Maverick 7301-6810 [Strongylocentrotus purpuratus]
MDVRLKHSFSCMVVGPSFVGKTEFVKRLLKNASTMIDKPPHKVVWFYSEFQPSYLEMSKSIPNIQFHENLPADFNSLTDS
ECPTLFVIDDLMDVAGDDKRVAALFTKGCHHRNVSVIYITQNLFHRGKESRTISLNTQYYCLFKNCRDKLQVTCLGRQMY
PGRK
>Polinton-5_SP_pz#DNA/Maverick 6471-5758 [Strongylocentrotus purpuratus]
MEHTQKMVLVPQTMLNTLQNNSTTTSSEQQVNNLDSQICAILERGDMDEHTKAQLYSQHLHHYLEANDALKKPLALELTD
NTISTSDSTSSPKGLDAVSHDTPHETKIDRDLLDHVPKTFAKRTSQLLQKLKNDKNIDWTENGQLIIDNKTIAGSNICDV
MYDIFRERRGYTPTSSDQFIGVLANMNIPETFSHDDVAIYNGGNEAATPDPSLPRQRHGNLPSPMYSTRHLPKQKLNV
>Polinton-6_NVi_int#DNA/Maverick 3550-2633 R [Nasonia vitripennis]
MEHERLVEELHKPARRNYPRRKFVMRGLDETWQADLVEMLPYSKENKGYNYLLTVIDIFSKYAWAVPVKKKTGKEVAAAM
KSLLSQGRVPKNLHTDRGKEFYNSDFKNLMQKHKINLYSTYSKMKASICERFNRTLKSAMWKKFSLRGNYKWLDILPGLL
ATYNGSKHRTIGMKPKDVSRTNEADVLKRFTDKVKPVKKPKFKVGDKVRVSNAKQVFEKGYTPNWSTEIFTITKVAATKP
TTYHLKDYQDQPISGCFYEQEILKAKYPDVYLVEKVLKRKGNXIFVKWLGFDSTHNSWINKTDNV
>Polinton-6_NVi_atp#DNA/Maverick 5692-4961 R [Nasonia vitripennis]
MSSIRTVQSMNFKEQPIKLPVPNFDSVVERDKKVKRHGDLLPDSIRAVFCGPSNCGKTNSLLALITNPNGVRFENVYVYS
KSLNQPKYXFLKQLLEPLKGIKYFPFSEHEEVIAPDSALPNSIMIFDDIACEKQNNVRAFFCMGRHKKVDCFYLCQSYAQ
VPKHLVRDNVNLLVVFRQDDVNLKHLYDDHVNSDMTYARFKDLCAQCWSDVNHGFLMIDKDSPINAGRYRKGFDQFAINI
ARA
>Polinton-4_SP_py#DNA/Maverick 3193-4524 [Strongylocentrotus purpuratus]
MALLHEKSDICCKSELDLFSVPYTQMSIVKGPWVEYHPVSNITDSGPIEFNLSGTAEEYMDLSQTMVHVLAKVVNPDNTD
LAADAPVGPINLFLPSLFSQIDVKLNETLVSQPSNTNAYRAFIDVLTHYGNDTMSSQLTQQLFYKDNAGKLDAVNPLLPE
GEVNHGLKKRHGFTSESKTVSLLGPLYGDIFFQERLMLPGVDVNIKLNRTKDAFCLLTSHPTLKYKVMIEKATLYVRKVK
VNPSVMLSHAKGLESSPAKYPINKVDVRSFTIPAGNMSLNKDNLFLGQIPNRIIIGFVDNDAYNGSYRKNPYNFKHYNLN
YISITVDGEPLPMRPMRPCFEEGKSQNYIEAYNTLFLGTSRLFSDRGIAINREEYAQGYTLYAFDLTPDLSDGCHLNLIK
EGNVRLEAGFDVALPNTLNCIVYSESQGLIQIDRSRNVINDFKG
>Polinton-2_NV_px2#DNA/Maverick 9788-10822 [Nematostella vectensis]
MANREYILYVSSSDRELGGEIGDFVVRFPKTLDLRDGRWEVGVASVNYQPHYDTFSDEEHDIWVMCKHLDHQTASPSSTA
VPYLQWHRVTLRRSRMANWLQLTENLRTAIDGFNTSRQTTRQALQQNYLDLEMVPDEYNEKVVFKVGWGNRVLIRRRLGA
RLGYTDASLSDEGPFYATLSPPNSVGGISHPIVIRGALPPDYPITEREAPNLPEASVTSHLLPQWTVFDCSLPLGSADVR
EYPSSSHPVFDVKTFQNMYLYSNITDSNYILGSSTRNVLRVMVDKGKPGDRGVERVFDRPFYFPLRLQLIDEIHLYITDD
TGRTIPFLSGGFEVTLHFRRTVQS
>Polinton-2_NV_pro#DNA/Maverick 12784-13404 [Nematostella vectensis]
MNANLQQDAMSTEELEAIAHSDRHIGPVFEGVYPSDLLPTTIPENGYGYSAYIINTDPSGRPGTHWLAAFFTSDRCEWFD
SFGFGPEAYGKVMVDFCALRPQLVANSHRLQALNSAVCGQYCLFFLYHRTRGGSMREIVSKFGSQYNWNDQIVCSFVHDL
VCHGPRHGTQRRRCPWRQCAVKQHHLVLGVNNNNNNYNNHNLWMWP
>Polinton-3_NV_int#DNA/Maverick 4446-5438 R [Nematostella vectensis]
MSNESRLSKIYYSTDGYWKGYSAISKLASVAKVSEAEAKRWLEKQALWQIYLPAPKYVPRPHWTVNKPNQIHQADLLFMP
HDNVGRKTYRYALVVIDIASRYKDAEALTTKDSSGIAKGFEKIYSRKLKWPHTVIVDPGTEFRGEVTKIMKKKGVTIQRS
EAGNHRAQAFVERANRTLAERLFSHQYAQEMISDDRSRVWVKRLPGVLKTLNSQPIRITGKEPAKSIGLKEVDIDPPTYK
RPVGLDEVRLPPGVRVRYLLAPGEEEGGERRRATDPIWSLKVFDLSRSVVSVGQPVLYYLSEGAPRRSFVREELQVVPED
TEPPPNSVLK
>Polinton-4_SP_pw#DNA/Maverick 2715-3152 [Strongylocentrotus purpuratus]
MARMKNLGRIINNTPLYVKQRGMGIPVFRGAVMQRGHGLGSLVRGLFRTASPLLKKGAMALGKEVLSTGMNIMQDTMSGQ
SLKSVAKRNLSQAGKRLARKALDGARKKTQAGGGRFLLVKRKRRGKKTIIRAKKSRAKRRRLDIFD
>Polinton-4_SP_polb#DNA/Maverick 13498-8933 [Strongylocentrotus purpuratus]
MADLTPQSSSQRSNLLRENLENILTTLYNFTPSQIQPVVNRTIDGVRGLAQRSPAIHPSTEDNAATSATVSEPNVTSNTL
VRDVGTKCNLASHGVHAASDIENRNWSDDEDFVITNPKTGRGQKRRQAPSFKKVCDSKSKKSKLSTKTKNKTNRLKRSKR
KVLDSPQPIEIQPERSNVEGERARFNADWDIPAPAHHTGPGTDYVSSHVPPPHVNYFFSSDEEEEAEIQIRESTRTVQRG
GMKINSNPETIDKTKGGKRKTKSNHLPPNDLQNDESSGPNIVHEDSSIEDEELLNAPRWQFVDSRISKRFGVRESWYDFV
GDIQNCTSICDVLYYIESSLDELRTLLLRDTSERDFVRLVLVSEQLNVPIGFPWAMIKDFDINAILERIERVLNSNQDFI
LKPGFTIRFHHVLNPVGGYVRKMDGLRDGEASLRKRSIITIPSSKADKTCFANALVIARYYANNNIKYKQWSRTDREPTA
RLQKEAAKLHELAGVEVGEVDSTHYARFQEVLHPEYRLVIYRGRKRHAMIYAGPPAEKTLYLYLTESSHYNVIKNMSAFL
CAKNYCKKCLEVFNDPRYHECCETCPDCFSDDCDRNDAKRSPRTCSECHMTFLTERCFQLHSVTPFNNSTACNTKNKCPK
CERVFDKDVFHGRVDDHECSQIFCRTCKDYVDGPTHDCYMKVTKESPYYVPSEKEATMMEIFANMKKKKLKKKQKSKDKK
SAEEHEIPDPGQLYIFFDFECTQNTGSHVPNLVHATWECTNCMDGPTLQSGDNHCPFCDRHGKRGITFQGKDTLDKFCDW
LFSESHAGAVAIAHNSKAYDSYFLLNHLISQGIIPEVIMNGGKIMSLRTKDPQIVVKDSLNFFQMGLAKLPKTFGIEGMK
KGFFPHLFNKEENENYVGPLPDKKYYGTNSMMKNVLQEFNEWYDSMPKDYVFNFQHEIKEYCESDVNILHKSCKIFRKHF
KEISKTKTNEEGIDPFLRCLTLPSACNLLFRTNYLKPDTIALIPSDGYTNPKRHSVKAGEWLHYKAQELGIEIRHAFNGG
ERKVHGRYVDGYAEVGDEKHIFEFLGCYFHGCEVCYKSDTINRRCNKKMGVLYNEAMHRVQLLENAGYNVTTVWEHDWNR
ERIEPTVMPIIEDLKETFKNPLNPRDSFFGGRTDGCSLYYKAQPDEQILYYDFTSLYPYINKFGKYPVGHPRILHSNFPP
VDQIFGLIQCEITPPRNLYHPVLPYRSSDKLTFPLCGACADALNQKQCTHSDSERKLKGVWVSEELKKALEKGYYDLKIT
EVWQFDRYSQYNEEMHSGGLFTGYIEAVMKLKQEASGYPVDAKTPAEREQYVKEYYEHEGILLDPKKIMKNPGLRAIAKM
IINVLWGKFAQRNNLRQTLYLSTAAELLKQLNDETVIVHDILVLNELLQLNFTNAEGFVDQNVNTNVIIASFTTAMARLK
LYSVLEKLDDRVLYHDTDSIVFRTNPSLEPFDPKTGNYLGDLTDEIDPAHEEFIDTYGSAQVLRITVTKQTRGTPCAKCG
V
>Zaphod1_Api_tp#DNA/hAT-Tip100 193594173 ref|XP_001944410.1| PREDICTED: similar to zinc finger, MYM domain containing 1. This is probably a copy of the recently added hAT-3_AP entry in RepBase, but this is a better sequence. hAT-3_AP has significant deletions and 10 or more frameshifts. [Acyrthosiphon pisum]
MYINVIAQVCSLQFDSSDYEKPLIQRMLEYSPKHQRKLKPNAVPSNYLCEIGMVHPRLPVERADVSTQCGDSLNEVETGC
SFLFFEVHICDFVDVVTDSLCKEEKLSIIDPATWTDNNMTQHIRAEVVKFGPYQVKDFDFPYSVIDGTKRKFSTFYYTRK
LINCEIIERHWLVYSKSCDRVFCFCCKLFSSSGPQQSLLSTIGTNNWKCLSENLKSHERSSLHLKSVQIWMELKLRISEN
STIDKAYQSAIEKEKQHWKNVMIRIIAAIQYLAKHNDAFRGSSDVVNTENNGKFIGIIEMMGKFDPTIMEHLHRIKNKET
RIHYLGHDIQNELIELMATEVKTNILQKIKLAKYYAIIMDCTPDISRHEQLSLVIRIVDMNSENEGTNPEIKEYFMDFVN
IISSTGLNLSEVLLQKLAEYQIPVENCRAQCYDNGANMAGQYKGVQARLLNQNPRAFFMPCAAHRLNLVIGDAVKSSTRA
IHFFGTIERIYTIFAASTGRWMIFTKHCHRWTVKRWSETRWESRHDSIKSVRFQFKEIIEALDEVSETTNDSLIKSETHS
LVSEISKYEFLISLCVWYTVLKEVNIVSKSVQGPNTNLDTYATLLNALIKFMGEYRETGFNQAKLEAKELAESLEIETEF
KVPRYRKKKKLFEYEGNTNYTTDPENDFRCSYFLELMDNAIQSIKKRFDQDIRKNCKDLAMFLKSGNEKDISDCDLFDEL
MICRNFVNESETPLQVLGTLKKCNGAFPNLSVAIRIMLTIPITSAGAERSFSKLKLIKNYLRSTMSQDRLSGLATLAIEK
ELAESVNYDTIIEHFAAKKSRKVNFK
>PrTip_tp#DNA/hAT-Tip100 445-3177 via tfasty with 47825024_Sde, 4 frameshifts and 12 stopcodons. [Philodina roseola]
MKRHQQDKNHLSRQVATLESLWAKKQKTNELSNNASITPEQYSTSTAEAETQSSSMILEECSTILVETQTDSTLLLSNQQ
HFTASSVITLCDISASGDEPPAQPILSVYPINEEKRCFQSQWYQNRPWLEYSIKNNSAYCYYCRHFGGSGMSKRIQSDAF
ISGFNAWRRALERDRGFDKHAKSMFHVQAMSSYEEYKRRLQTSSSVMNLLEKSRIEQINQNRAKLIKICSTVLLCARQMI
ALRGHEEGLExVLxRVCSMxMHVTFYSSSYRSTNRGNFVELLQWASSTDPLVDSIINDSSCNATYLSPTIQNEILSICGQ
SNTERDCxRSKxTKNEPVTKPMEFFTSQMKNQPFVLMADEARDISGKEQLSIVLRYVDDKNEIQERFMGFTKLDQFDANS
LAEKLFEFLEKWNVPAHHCIAQCYDGYVCYTCNATCYKTCFCDxLxASVMSGKNAGVQTLMRQKYMPKGIYIHCFAHRLN
LVIGDVCKVVSYIDEFMSILSKIHEYFTCSAVTNEYFHRAQRLLELGEYFKKILWTIPDLTSFxFLDVSSSLKLWAPTRW
DSIWFSIDAVKNNYTAVVASLIDLVEQGGHRAVDARGLHCRSKNLCFxSRCSLFIRCLVQxKFxVINxNVKFTVGFIEII
SLVRILASSLDYVSARALIKSVINQIQGMRNEATSSELFNQVVDFAKKHKINLDKPTRSRRKTSIPTRFKDSIIITTTVG
QRDRGNEESFISNESKFRDELFYSLIDSILIELNDRFGPENVWLLSSISAAHPNNEHFLDIEHLKPLASHLSINNIQLAN
ELGVVKHFLRDKVESIKTIKDTLIILAPLNEAFPATTALLRGALCFPVSSTTCERSFSRMKNIKTYCRNTMGDKRLSDLT
LLAFERNFCIDLQETVDIFSVNHKNSRILLR
>Zaphod1_Osa_tp#DNA/hAT-Tip100 ref|NP_001046391.1| Os02g0236500 [Oryza sativa (japonica cultivar-group)]
MDICRSRINIDIVGQKEEGIKNYIVRTGSGPRQEVRWPRAQKKFAMLPKKHLSGAKKRKKRKRGDQFIESQKGAIHKFFS
ASSSAVPDENPEADYPSTEEQEQQLVLFVNTEDDANHDDSEHENLQRSPCTENANVDVHENIYDPRTWENLDNRGRDILI
EKGPIREFNLLFPSDSSGRHFSYAYYSRKLSNGEVIDRKWLVYSKHVDKVYCFCCKLFKSNQSKSLLASDGLKDWKHLSG
RLKQHENSVEHIKNMNTWNELRLRLSQNQTIDDDLQRGISKEKERWRQVLIRIVAAVKFLAKHNLAFRGSNEKLYQDNNG
NFLGTIEMVAEFDSVMQDHIRRIQNHEVHHHYLGHNIQNELISLLAQAVKVYIMRVIKDAKYFSVILDCTPDVSHEEQMT
LIVRCVNLSSNIPRVEEFFLEFLKVDDTSGLGLFNELMKALDSLELNVSDVRGQGYDNGSNMKGKHQGVQKRLLEINPRA
LYMPCACHSLNLTLCDMAKSCNKAISFFGVIQRIYTLFSCSTKRWKIFLENVPHLTVKSVCNTRWESRIKSVQAIRYQTP
QIRSALLELEKASTDDPKAVSDAQSLVTALENFEYLVGMVIWHDILFSINMVSKKLQSEIVCMDATLKQIEGVISFFQRY
RNEGFTSSIDIAKVIASDMDIEPKFPTKRQAKRKKHFDEQNDQNEEQQSVVESFRVNYFLVMIDVAIASLTSRFEQLKAF
ENVFGFLFTSKNLKSLDDTDLWQCCTNFVETFSHNNSSDVELNDFFSELKVLQATLPDALNVRVFSDLKSPIYRRVQFRI
QILPNQFLRKSLFCLPRVRWAEFLSAHLPLPPGALSLSLSLSLSPSASAPPARRVRVRESRVERPPFPSLCPRVRERRAE
RPSPSLSFSPSLVSSPPAKPAPAHHCSRARPRGRRPRRACAVCAARPRCPAAPTAARPRSQRACPSRATQSAAPPVASRA
REPWWPTAWSPPSSAPARACRPCRHSAPNRPAVIAVISACPRLSPVSPLRSKPPRRHRHRHRLGPATPRASRQGTEAEPL
LPLPRRPRSPPPFPKEARDKPPFSPPFSPFFPLAGVTSCRRFGR
>ZhAT2_ZM#DNA/hAT-Tip100 748-3270 [Zea mays]
MKRKKGPIVDLKDFLQRAANKKKTQEQTQGNTDPMSTTKESQMQLVVYEGRPKYASGSGATSVPLEPESEIGDFAISDSE
SKSSDEGNDESTYNIEHDPGLRSPISGYHINDHDSVRRAYIALGPCRPKMKKDDFPQHNCGGMRRFQPKWFGEFNWLEYS
VHKDAAYCFVCYLFKDSDHGGDGFISGGFRNWNMKDRFRKHVGAINSAHCEAEEKYNLFIKPKTSIRESVASNTVEFKAQ
YLARLTWSLKCIRFLLHQGLAFRGHDEGKDSHNKGNFRELLEWLAGNFEEVNKVVLGNAPKNCQLIDHKIQKQLITCCAD
ETTKFIIEELGDECFAILADESSDAYQQEQLAICLRYVNRMGEPVERFLGLVKVEDTTSLTLKEAIQSMLIKYQLPLSKV
RGQGYDGASNMKGHVNGLKKLIMEESPSAYYVHCFAHQLQLTLVAVGKDNIDCQWFFGQLAYLLNVLGMSCKKISMLRVA
QAEYMIEALKLGEIETGQGLNQEMGLARPGDTRWGSHYRTVVHVMALYPSIKKVLSKIGKEHKGGESLGARTMLQVFQSF
EFVFMMHLMNEIFGYTNDLCIALQRREQDIVNAMDLLEFTKVELSVLREDDGWNEFNGKVNSFCEKHKVKVVDMDGKYKP
IQRDKKFYKNAINYHRFHADMFLGVIDRQLMELNSRFDEVNTELLRCMACFNPINSFAAFNQEKLVRLAGFYPHDFEFEE
MNQLPFQLNRYIENMKRDDNFKNLRSLAELSMMFVKTQMTLRYDIVYKLLKLVLVLPVATAGVERVFSSMNHIKSKLRNK
MGQEFLNGCLATFIEREFFLQAKDKDIIARFQNMKDRKLVL
>Zaphod3_Hma_tp#DNA/hAT-Tip100  ref|XP_002156794.1| PREDICTED: similar to zinc finger, MYM domain containing 1, partial [Hydra magnipapillata]
EGENAAHVLSDTSTSDEEDGIVSVGNVHYDEKDIDNENDDGQDGDVNDRTKETAIDYSDCGMWPILRNIQFVDYVINIGA
IQVNLDTYPRDNRRRHFSNAYYNRKLSNGEVISRRWLVYSVYKDAVFCFCCKLFDFNMNLKLNGNGFNKWKNLTEALKIH
ENSKSHRIAYQLWIETEIRMKAGETIDKQEQKLIEKDSLRWRSVLERLMNITLYLATNNMAFRGSSDKLYAVNNGKFLGL
VQLLAKFDPIMLNHVTLALKGDISDHYCGKTIQNEMIDIMASKVTNIIISKALKSTYYSIIADCTPDVSHKEQLSLTIRI
VNISEYPIKINEHFLGFFNVNNTTGLGLTEIIIGALKDFGLNISFCRGQGYDNGANMKGKKIGLQKRILDLNPLAFYLPC
GSHSLNLVICDAAQSSLNSINVFGIIQRLFTLFSASTSRWNVLLSHTTNFTLKRLCETRWEAKIESLKAIRYQISSVHDA
LITIYETETKTPDIAHEAQTLAEQLKDYSFLVSLIAWYNVLFQINVVSKAMQAKDMDLVQCAEMLKKCITFLENYRTFGF
KQATVDAKELAEELNIDAIFKPLKRVRRVKRHYDENAFDEPIQNPEKKLEVTFFNPLLDTCLSSINERFEQLNEYVNIWS
FLFYLDNLPIKNELLKLCKQLQEKLTVNTKSEIDGALLCDELISVQFFIKDKLSNVENEINTKEMTPLFVLNLIKKHCLQ
ELYSNTWIVLRILLTIPVTVASGERSFSKLKLIKTYLRNTMLQDRLNSLSMLSIEQDIAENLDFSSLIRDFADKKARKVR
F
>PRKRIR_Hsa_eg#DNA/hAT-Tip100 EXAPTED GENE; gi|19923268|ref|NP_004696.2| protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) [Homo sapiens]
MPNFCAAPNCTRKSTQSDLAFFRFPRDPARCQKWVENCRRADLEDKTPDQLNKHYRLCAKHFETSMICRTSPYRTVLRDN
AIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQKKIDETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEEK
ENKEYLKSLFEILILMGKQNIPLDGHEADEIPEGLFTPDNFQALLECRINSGEEVLRKRFETTAVNTLFCSKTQQRQMLE
ICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHNLREEFIGFLPYEADAEILAVKFHTMITEKWGL
NMEYCRGQAYIVSSGFSSKMKVVASRLLEKYPQAIYTLCSSCALNMWLAKSVPVMGVSVALGTIEEVCSFFHRSPQLLLE
LDNVISVLFQNSKERGKELKEICHSQWTGRHDAFEILVELLQALVLCLDGINSDTNIRWNNYIAGRAFVLCSAVSDFDFI
VTIVVLKNVLSFTRAFGKNLQGQTSDVFFAAGSLTAVLHSLNEVMENIEVYHEFWFEEATNLATKLDIQMKLPGKFRRAH
QGNLESQLTSESYYKETLSVPTVEHIIQELKDIFSEQHLKALKCLSLVPSVMGQLKFNTSEEHHADMYRSDLPNPDTLSA
ELHCWRIKWKHRGKDIELPSTIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENGRKRLKAYLRNTLTDQRSSNL
ALLNINFDIKHDLDLMVDTYIKLYTSKSELPTDNSETVENT
>hAT-5_STu#DNA/hAT-Tip100 876-3227 [Solanum tuberosum]
MEKFLVKFNHSQASSSTNVNPSSLIDDLNLDSLEADPGKRVPIAHYNPRIKDEVRKHYIQKGPCQPKMDSYPPTEIGKRM
RQFCKIWFEGPYSKWLEYSVEKDSVYCLCCYLFKDDFFHGSTSEFYTKTGFRSWNRALERFRKHVGDVNSIHDKCFNKML
DLSNHHQSIQVVIDKHSQKLKNEYRMRLEASIDVSRLLLQYGLPFRGHDESESSINQGFFLGFLRWHGDKHPDVGKVILE
NAPQNDTLTCPMIQKDIANACAKETLKAIIGDLNGDYFGILVDESKDISHKEQMALVLRFVNKNGEVVERFIGLVHVSDT
SACSLKKAIYSLLSVHSLSPSKIRGQGYDGASNMKGEINGLKTLIMKDSPSAYYIHCFAHQLQLTLVAIAKKHLDVEDFF
DHVSNVLNVVGGSFKRRDLLRDHQAKKLEQLFESGEVQKGQGLHQERGLQRPGDTRWGSHFKTLDNFIVIFSSIVHVLEV
IELEGSTSSDRNQAEYLLTKIKTFKFIFVLHLMLKVLAMSNELSKILQKKDQDIVNAVEFLNITKKRLQDMRENGWESLL
DDVSSFCDVHDILIPKLDESYFPGKSKRKSSGVSYAHHLRVEVFFVVIDVQLQELNDRFDVVSSDLLLGMGSLNPVNSFS
NFDKGKIMTLAKCYPSEFDDGKIRDLSYQLDTFIIHMRSGNPKFSNLQGIRDLAKALVEANLAETYSLVYLLVKLTLILP
VATATVERAFSSMKHIKNEVRNSIGNQYLNDCLVCYIERDVFINVSNDVIIDRFQNMKTRRGQL
>HAT-3_BF#DNA/hAT-Tip100 1907-3694 [Branchiostoma floridae]
MAETQRLHRDGLLKQLSALKFLLRQGLAIRGHHDKDGNLYHLLQTWADDSEVVRSWLHQGRFMSHDHINELINLMGNDVL
RSVLARIKGSNPAYFAIIADEATDVSCNEQLNISVRYVDHDYEVHEDSLGLYKLSSTDAATITAAIKDTLLRTGLPLKLC
RGQAYDGAANMKGHRTGVATRIKTEEPAAVPVHCWAHSLNLCLQDTCRQIVAVRDAMDLAREIDKLINYSPKRKTLFTQL
ASGADSSTSSGTIKPLCPTRWTVRTGALESILANYSTLMDTMQQVNETTRDEYGLKAGGVLAALEKFGTLFSIRLGQLLF
SAAETTSTTLQKKDLSVQEAMDSVETLKKYYRRQRTEESFDAFYASTVEKARELNIDEPVLPRYRRQPRRLDDGSDPHRH
ACPKDFHRLVYFQACDLLIGELTERFNQEFLKPVVAMEKLLLNAANGDDFTEKMDEVTSSVFGNDLDPPKLRRHLSMLPD
IIEQALPEVKKVTSIRTICSAMTTASHRSTFTQTHKLLRLYLTVPITSATSERAFSSLKRLLTYLRSTMTEQRLNNCMLM
HVHKDIVDDMDLSDIAADFASLNGDRMRHFGQWKNK
>HAT-10_NV#DNA/hAT-Tip100 22-1420 via tfasty with 50540428_Dre, 1 frameshift and 4 stopcodons. Consensus misses coding region for the N-terminal 250 AA. [Nematostella vectensis]
EIRNAWLFSVLADEAADISNKENLSVVIRLVDSSTQTIREEFIGNQExDDGTTGEQIKKKILEAVTTxELWKTMEDCHRQ
CYDGAGNMSGKMNGASSLISCEHSKAIYVHxMNHRLNFCVASTCFMPLVRNAIEVVGKLHAVFDNSPKRFQYFKEKVNEL
EKEATKVKLINVCRTRWIDRIEGMHRVIELLQPVAETFKDIALNQGKDWNPNSRIDAQALVNALSFSFIITVVVVSYILD
LTKPITVKLQAKEIDLLKAKDELRILKSSLRDMQNNIDERYNVVHRQAVEPGRKIGVEPSMPRIVQRQVHRDNSPAQNPE
QYYKINLTTKFLDHALQQLDKRFQDEVFVCYKGLSRIPSVHSDHYLRDLPNPAALPAELIMWEKTWEDRSRGEHIPDTVR
TTLQTVHPETYVNIYTMLQILATIPISSxSCERSISSLRHLKTYLSSTMEQERLNGIALMFSNRGI
>HAT-69_HM#DNA/hAT-Tip100 701-3352 Near identical to ref|XP_002157237.1. Zaphod-like.  [Hydra magnipapillata]
MDRGKRQRLSGSQYKKIRLQREANSAKQKNALLHFLSRSSSEKALAPIVASTSNQNEVEIEIESGGEIEYADSVSVNEYR
NSGNDDTAKEPENVDEVEFISNLSEVVVQNVDDIGQNENNEDQSGEDPKTNKDLPLNFNDPAKWPIIDGKFKALLMKYGP
IQKLPSLFPEDEQGRKFSSFHFYRRMSNGDKIKRTWLVYSITKDTVFCFCCKIFSPNKFSLSSHDGCRDWKNISVIIKRH
ETSSGHTTAYLNWRDLEVRLKSGATIDHINQKIIQSETQHWRQVLARIITLIRTLAGQNLALRGTCEKLFEPNNGNFLKF
IEFLGNYDPIMSKHIQRITTSEIHTTYLGKTIQNEIVELLANKIKNDILAKLERAKYYSLILDCTPDISHMEQMTVVFRF
VSATESSSEKPAEVVVSEHFVTFLELQDTTGANMTKVVIDKLQELGVNLDDMRGQGYDNGANMRGKYNGVQARIRQLNPR
AFFVPCSAHSLNLVLNDAANCCMEAVAFFDLIQGIYNFFSASTHRWSILLNHLSDLTIKPLSATRWESRVGAVRALRFQI
SGVYDALIEIAEDNTLTTAPQVKSRAEAKGIARNISNFKFVCSLVLWYDILFQINIVSKMLQSQALDLSLALEHLNATKS
FLCDYRCDEEFAAMVENAKKLAVELEIFEGFDVDDPVRVRRKSRQFLYEGRDEPIVSPEQNFRVSFFNRILDIAIQAINE
RFTQLSEYNELFGFLYNIGSKPLTDDELLKHCKDLHLALMSDGQSDINGVELWYEIKAIGRRLDTSNSDPKSVLKCIYTS
NVVEVFPNLSIALRILLTLPVTVASAERSFSKLKIIKSYLRSQMCQDRLVGLATISIEKEIADHLDIEDLVKDFAELKAR
KIHF
>HAT-11_Mad_tp#DNA/hAT-Tip100 854-3251 via tfasty with HAT-12_Mad, 1 frameshift. [Malus x domestica]
MFFYFSVMERYFKRKTQPEILEPSPKSPKNNESSSKQTCVDSMEINSETLQYDPGLRRPILSYHPNVRDQVRRAYLQNKP
CQPKTHAFPYTNFGTKPRRFNPAWFTQFPNWLEYSTSQDAAYCLCCYLFKPDIGDQSGGDTFVGVGFKNWKCKKKLEIHV
GGPNSSHNNAWRNCEALLNQKQHIETVISKQTDQDRIDYRTRLGASVGVSRILLQQGLPFRGHDESENSLNQGNFLEILR
WLRHYNEGIKAVTLENAPENLKLTSPDIQKDISSAISYEIISAITSDINDSLFSILVDESRDKSSKEQMAIVLRFVDKGH
VIERFVGIEHVADTKASSLKLAIDDFFSRHGLSISKLRGQGYDGASNMQGEFNGLKALILNENESAFYVHCFAHQLQLAL
VAVAKKNSEIGDLFTMVSSVVNVVVASSKRRDILREKHAHVVLEALENNELSSGQGLNQETTLKRASDTRWSSHYNCLIS
LAHMFSSTIEVLEIVRKDGTSSEQKFEAKVLLTFIQSFNFIFGLHLMKKVLGITNDLSQALQKKDQDIVNAMNLVNICKG
RLQRMRESGWESLFDEVSSFCDKNRIKIPSMDDIFTSGERPNRKAHPITNVHHYRVDLFTDVIDKQLTELNDRFTEKNTE
LLLCVACLSPSNSFSAFDKEKLMRLAQFYPSDFSEHDLELLKEQLENYIWDMTSNSEFADLKGISDLAQKMVGTKKDHTY
PLVYLLLTLALILPVATASVERVFSAMNIVKNTLRNRMGDLWMNDCLVAYIEKDIFNSIEDEAIMQRFQNMKTRRGQLF
>ZhAT9_ZM#DNA/hAT-Tip100 524-3105 via tfasty with 34894392_Osa, 1 frameshift and 3 stopcodons [Zea mays]
MKRVRTIASFYQVASNQESNEIIQNVQIGTNLDENENNQESLDVGTAQNNTESIDSEIVGDPGLRKPIEELDVNIRDVVR
REYLLLGPCQPKGHIFPKKRIGDRQRSFQESWFKKHEWLEYSVAKDAAFCFYCFLFKQPRRENFGVESYTGATGYNNWKN
AIKSFDVHVGNIDSAHNKARRCFDDFKNQRQSVSHVMSQVSRKQEEEYLSRLIIVLGVIRFLLLQALAFRGHDESSTSNN
KGNFLELFEWYKKKDxSAKKLLDSTPKNCMLTSPEIQKQICEACAEETKKVILAEIGDKKFAIIIDEARDTSIKEQMALI
LRVSYCCNYxIFINSAGNFYxFTFPCRFVNNQGQVIERFLGIEHVTDTSSSSLKQALDGMLSKHSLSIKNLRGQGYDGAS
NMRGEFHGLQRRILDENPYAFYIHCFAHQLQLVVVSVAKCCSSVMDFFNYINLIVNTVNASCKRHDQLAQEHHDNLVQRL
ENGEMFTGRGKNQATNLARPGDTRWGSHHKTLCRLQLMWSAVLEVLENVCQDATNLAQRTTATGLLEKMESFEFVLVLHL
MIKVLGKTNDLSQCLQKKDQNIIRAIGLVGVTLQKLNEIRHHGWDAIFEEAKDFCLKHNIVVPDMSAEIVRRGCSRGRRG
QLVTYYEHLHHEIFNVVLDQVIVEFNNRFAERSTQLLRCVACLDPSNSFANYDEDKLVELAQIYVDDFTEYDCIVLRDQL
DTFITEGREDSSFLSCCDLGNLAMKMVKTDRHTVFPLVYRLIELALILPVATATVERAFSAMKIIKTDLRNKMGDEWMSH
CMICYIERDIFASIEDRQIIEHYQAMRTRREQIPKTSKSGTFSSNNSILCSLFSLITYVIT
>Polinton-1_AMi_4p#DNA/Maverick 13941..12805[Crocodylidae]
MHHTGVSMGWVWGKRLPDMSTQEAMLKEVYYSPGEAGSFGGVNTLFEATKRQNKVLNRSGVAAWLSDQDAYTLHKPARRR
FKRNKTVVSDIDAQWQADLVDMQQFSKHNHGVKFILTAIDILSKYAWAVGLKDKSGGEIARAFKTIFTEGRVPRKLQTDR
GKEFLNKSLSKLLKQYNIHHFVTNSEVKAAVVERFNRTLKSKMWRYFTARNTFRYIDVLPEFIKSYNHSFHRTIRTRPVD
VNFSNSPRVWKAVYGDYFKIKPAAPVFRKGDHVRVSRTKGRFEKGYEQTFTDEIFIVDEVLRRVQTPVYHLKDYEDEPIE
GSFYPEELQKVNPKQDRVYRVEKVLAMKGKGRKKRLLVKWLGWPAKFNSWVEASQVCNI
>Polinton2_SM_polb#DNA/Maverick 8027-10807 via tfasty with Polinton1_SM_polb, 2 frameshifts and 4 stopcodons. [Schmidtea mediterranea]
MGYVKVQFTALIQFAKDGEIKDNFFSNSASVFPDSFLADEVSRLNEKIEKFTYLGSWWSVVKIREIDFILTTYYPISRLA
GHGFIPTPESLVGKKAIVNVKNTDQxCFIYSVLAILKRDIVLMHRERVSSYTTFMDELNYDPITNCPMRLCNIPKFERNN
SELNLEINVFEYNTTPSKQLNDIDYVPHHPHLVxIHRTKVIGGNQINLILLQDGDNYHYTAVFNLNKLTNxHSSSECNTR
IRIKWCPHCLHGFCxIKPLRHMLICALKINRNNPDNKNLIFKNYSKMITPSFVIYADFEAVLPKDIKHHQIHMPISAGLL
LINNNTNTTQYFSFIGLECVLEFLKKVEEIAVTIVLPYYENHGKKPMNNLTSNEEQQFIACRTCYFCKNLIRNKDKDHDH
FTGQYLGAACCNCNINRKISKQLPIVFHNLRGYDLHHILKYGLNEFTSWKLNIIPTTTEKFISLIVNIKKLAVRFIDSMQ
FVNCSLAKAVKTLTDLPLTFYAFDGLIVKAKGIFPYDFAISLEVLKSTYEPPKKWDSVSDDEYATAQLIWTQQNCTTMLD
YMLTYLKLEVFLLAYYFQQFRAKAIAYNCLEPLNFYGIPGMSRASALVALKEPIEPLQDMGMFNFYEGGIRGWLTFVNKH
YVASSDDTELLYIDINNLYGWALSQNLPYGDFVWVHENLNDVLSECVNANIEFLPYGYSMEVDINIPERVYHYLNDFSLA
PEKMCPPNSKVEKLMLTHYSKKNHVLHWRLLKLYIELGAKIECIHRAIKSKQAPIFKDYIQRNTDLRSNSKCELHRDLYK
LFNNSLYGKSVENLIKQMNLRLCNSAEKMIVFASKPTYKKFIKIVDDLIAAHLNKDSICLDRPSYIGQLVLDLSKLLMYQ
LQYNELAKYRSEFYCDINIVAGDTDSFSREDKHCMDIGKLQYLYLRK
>Polinton-1_CB_py#DNA/Maverick 2890-2030  [Caenorhabditis briggsae]
MIEAIDKILVVDAPIVTDTSIQKENLISVFPSSGSSLNQHGEINFVIETCDQYLHLHKSYIYLEVELSKLDDAALAETDE
VSLTNNAPMFLFDRATYSMDGVQVENIMDPGRASLMKGLLTYSSTMNKQNTFGWILETKDIITYKINKYTKNRKGTITFC
IPLTHIFGFAECYNKIVYGRKHQLSLYRSPENKNSIVSSDATKFTAKMNIKRLQWIIPKIVPSLEMQIKLLNIFESSKLV
QMPFISRQFESYNIPNGNREFTWKMGTKYDKIKYIVVAFQCARDNNI
>Polinton-1_DK_int#DNA/Maverick 2855-3772 (reverse) [Drosophila kikkawai]
MSRRGIINELHAPARKHFLRRRVITKGINCLWQADLVDMQKYSSTNNGYRYLLTVIDTFSKLAFGEALKSKTASHVSEAL
EKIFNSGHGVPKNLQTDDGKEFFNIQFKSLMNRYEINHYSTFSTLKASIVERFNRTLKELMWKEFSYNGTYKWIDMYQAL
INFYNNKVHRTIKMAPVEVNADNERHILQTVYNNIKMFAGSKLKIGDNVRISKYKGVFEKSFTPNWNVEIFTIYKIQNTY
PVTYLLKDLNGNPVKGGFYKEELKKTRFPNTYLVEKVLKRQGKRALVRWLGFPKSDDSWINTSEIL
>Polinton-1_Crp_2p#DNA/Maverick 6408..7478[Crocodylidae]
MFTLCRLCAETRQQKCNHTDEERALLGTWCTPELNKAIAKGYRVAQFYEVWHFAEKSSTLFSQYIKMHLRQKQEASGYPA
WCTDQEKQERYVANFLQKEGVTLRPEHIKPNPAKRQIAKLFLNSLWGKFGQRTNLPNTSIVRDPEELFGYLFSPAYEISS
CDFIDDEAACVSWKHAKERYTVSGNTNIFIACFTTAYACLELYELLDSLQDRCLYHDTDSVIFVSHEGDWNPPLGDYLGE
LTSEIPPDEHITEFVSAGPKTYGYKLSGGKVCLKVKGITLNVANSEKVNFETLRDLVLDYGANPTGDTPKTIVIQQRSIV
RNKSKWTIETKTLRKTQKVVYDKRVLTENFNSLPYGF
>Polinton1_SM_atp#DNA/Maverick 3475-4100 via tfasty with Polinton-1_SP_atp, 1 frameshift. [Schmidtea mediterranea]
MELRNDAVYQIVGPSRSGKTMFLCKLLKSNLFQTKFNKIYWHRGADEEHGLTQDNFCKLKNMKIVKGFDKNWSSRLRKGD
VIIIDDLYHKANNEKDFNNLFTKISRHVGVTVIFITQNLFHQGGAHRTRNLNVQYLVIFKNPRDATVIDFLARQAYPNNR
NFLISAFQDATKSPHGYILFLDFSQQCNDDLRVKTDIFNKEGAMVYKQS
>Kolobok-1_DBp_tp#DNA/Kolobok-Hydra 392-2152  [Drosophila bipectinata]
MSSTHKVSRELRKDFRIYKSFSKKRKQYFNPKTVERKSFSASRKKLKFKDDVHVPVDQSVQYLFINFLQVFTGISQFVKC
KTCDGAVQFNPIEMRGLGYKIAVTCDDCEQRKINASAVIDGAYEINRRFIMTMRLLGLGLAGCAKFCGFMDMPPFLKQKS
FDSIMKNILTTVKEVFLRFTKLAAREEIGQNMGQIANHLTVSGDGTWKKRGFSSLYGVASLVGHYSGKILDIVVKCAFCK
MCQMWDGKKDTIEYEDWMESHESQCTSNHTGSAGKMEVDAILEMFQRSENLHDVXYANYVGDGDSKTFSMIRNAAIYDDL
LVQKKECIGHVQKRMGTRLRNAKKGNKGLGGKGKLTGNVIDKLAVYYGLAILNNSDSVEGMKNAIWATYYHYSSTDRHPQ
HEKCPSGNESWCEWQKAFAALPKENLKKKNFIPKFVHSYKPLPDDVLQVIKPIYEDLSKDELLERCLGGFNQNNNESYNQ
LIWKMSPKHQPGGAVPVAIAAYTSACIFNEGQASVLKIFEAMGVPCGRNAHDYAAQQDENRIVAAEVRAQAATREARIAS
RRRQMGSLEDEDGTDDSLYGPGIDDDL
>Kolobok1-1_HM_tp#DNA/Kolobok-Hydra 363-2160 via tfasty with Kolobok-18_HM_tp, 1 frameshift. [Hydra magnipapillata]
MTKPTDLGVILNKNINDRVKQRTNYYKKRRGFMVKKNKNACNVSECDSIERNILGASAKKVKVVTNVPSKNIKRITGYRI
IDTEILSKVLSLLMCPQCEKCALYLGDHQKKKKGLATLLYLKCTTLSCDYKHEFYTSVACDKGFDINNRTIYAMRVLGHG
HSGIEKFTQLMNMPKPMTPKNYSKITTKINKHVSDCAKSVANETMSDAATEMKENATSEDIVDVGVSCDGSWQKRGYQSM
NGVFTAILIDSGKIIDVEPMNKSCKACCMKEQLKKSNPDAYANWKNKHICLYNYQGTAGGMESVGAVRVFKRSIEKHKLR
YTQFLGDGDSKSHLSIKDIYPNMEVKKLECVGHYQKRVGTRLRKLKKNVKGLGGRGRLTNAVIDRLQNYFGVAIRSNTND
LNKMKQAVLASLFHVASSKENNYHIYCPTGGDSWCKFNIDKAKSTSIYKPGPGIPLSDIIHKIKPIYADLSKDSELVKCL
HGKTQNCNESFNNLIWDRLPKSNYVGLGSLEFGVYDAVANYNIGMKSVILIYEKLNMKPGHFTLAGCRLINKKRIKLSLF
KSSESFKMKRKMLRRQRLSKDDHQKSIEKSKEYYESGSF
>Kolobok-3_HM_tp#DNA/Kolobok-Hydra 347-2154 via tfasty with Kolobok-2_HM, 1 frameshift.  [Hydra magnipapillata]
MVKADRIKVRTKRAGKRKKIFNRKVISSSVSVNNVNFPSLSVNIESPVNSQTDIFDTPSSSLRKVEAVISSTPQKYTNTK
NKVLTGYRIIDCSILSDVISVLSCPTCFQTTLAIIENKSKKQGLACELSIICLKCKYQNDFYASKLVNKKGNFDINNRTV
YTMRTLGLGHSGIERFTTLMNMPKPMTPKNYDKLVLKITNITEEVAQETMTDAVSDLRLQCQNDNEILDVGVSCDGTWQR
RGFSSLNQKLSKKNPTAYVQWKNSHICKMNYVGSAGGMECEGASRIFQRSIKKHKLQYINFLGDGDSKSYNSVKDVYPST
QVNKLECVGHYQKRVGTRLRKLKKNVKGLGGRGRLTDATIDRLQNFFGVAIRQNTGNLIAMKSAALATLFHVASSKANNW
HYPHCPTGVSSWCKFNRDKANSTNTYKPGPGLPLEVVYKIRPVFEELTKEDELKKCLHGKTQNANESFNGKIWDRIPKTK
YVSLTLLKFGVYDAVANFNIGMKSSILIYEKLNMVPGFYTLNGSNDINKTRIKWSIYKLNSHNKLHRQKLRAKKLKKNDK
TLKKKVKHMKQEVFNIKYSLXYNVTYICRSFIVYFHFLCVFSV
>Kolobok-2_BF_tp#DNA/Kolobok-T2 380-4168 (4 introns) [Branchiostoma floridae]
MPVCVVCRNTNKNTKGISFHRFPRWEEDRLQKWLVAVRSKLRLPWTLEKIKDSIATNNNARVCSDHFSPSCCTDNQKAKY
VPYKVPAKVISNDAVPTQFGLKSSRSSSECQREKRTRIQLLEDLLQPNSEQLKIPALPTSPKQSTFHCESQEPMNEAAVE
AGHCGSTSGTNLSGEDPSSRLTSMFHTYSKPPCDQPPRFVNASTQTDLDGDTIASLLSTSRPKTCDTVTCTSHLPSTPKV
IPRGSVSSLPSSTPILKHSDLDQSFLSSPSVVDMKDTSFHPSDFTSDSENEEEIDCGEDEGGDDGEDDFISGDDDSQYYV
VHKDKIRERFKTCHCGEPLLITEQFTTGSMLTVKYECTSFHRGTWESQPKVGRMAEGNLLTSAAILFAGGSYQKFSDICN
TLKLKLFSETYFMNVQRTFLLPAINDFYISQQEFTLDAFRNAGTESPEDQIQVTLLGDGRCDTPGHNAKYCSYSLMEETS
QLILDFQLVQVSETTSSNAMERLGFERSLDFLEEEGIKIDCIVTDRHRGVGAVLKKRRDINHQFDLFHFAKSITKKLTQE
ASRRAKKDLGPWIKFIVNHLWHISDTCQGDDVLLQEKWLSMLKHIGNIHVFPENSIFTRCAHPHLDRADTDDIMWLRPGS
PPHQALYNIATNKTLLKDLSHLTGFKHTGTVEVFHSMLLKYAPKRQHYFFHGMKGRLQLAVLDHNENVLREQAKTLEDEA
RRSAAFSKRTKRWVYRRLFEGKTYEFREYLMADVVRRQASGQYKCGKVVLPDPGPDISGNIAPEERGDKQAIIDGYMTRF
GLR
>Kolobok-8_HM_tp#DNA/Kolobok-Hydra 398-2170  [Hydra magnipapillata]
MGRSIARTKKRKFSCNQHLKSSKFIQLDSSISDPSLSASSRKLVNTEISGSQKNYNIIINFNILKLMVSEFKCPKCGNEV
CLENDLKSKKGFCFYLTLQCLCCPFSKGWHTSQFSTKKSKSTPGVPTASVNFQVVTAFREIGKGYQSICKFAAVMNMPSP
MNFKNYSAINNNLLNIYNEVASASMSSAANETKDIISNSSNVNDVSACQVSVDGTWQKRGHQSLNGIVTAISRENGKCID
SILLTKFCKACSYWNKKKSTPGYQNWKINHVCEANHNKSSGSMEASGAVSIFQRSIEKHSLRYEGYIGDGDSSAYNDVVA
SNPYPGFEINRLYCVGHYQKRLGNRARNLRVTLKGQFLSDGKRINGKGRLTDKAINTLQNYFGMAIRQNVNNLYAMKKAA
WAVLFHNSDISEESERHKFCPRTRTSWCLWQSNKVTGETTYKTKLSLPLAIKAVLMPIFTDLTNETLLSKCLHGQTQNNN
ESLNALIWKRCPKDFFVGKKVLEISMNSAIIAFNDGSTAVEKVISAGGIEPSMFMQEGLRKLDLIRIKKMNHKSSAKGKL
RRKQLRAIKKGYIDIEKELEKDPQYNSGGF
>MuDR-2_NV#DNA/MuLE-MuDR 173-1939 Probably partial. [Nematostella vectensis]
MADMNDLIKAAIEEVNSQSKPFQSKSIDENRFIETLPEDCTYHVKELSGVEEKFKAIIQTEEVTTENLDGWLDEYEAINS
ITVRVKTKKKQTKGCALKNYYRCHHNTRNWSPSKDPQKKLLLNPSARVKNTNCPFQMFVKIACDGCCTIEITWDHNHSVD
TLEASNFHDFPPEVIDKVMKLFESGCTPSTARQQCLKDLRESCKGELDYHRKKANRSLMPRRRDFSYLYTQMCKERYGGT
GHLMFSKMVEKLEEYRKANPEASTKHQIYGGDDTPLIITVISPLMKRVHKEVQQSAELVFIDATSNTEEHNLKVFVVCTH
NVAGALPLGILITSDERKKSLKQGFEMLQSCLPDYAFYGHGPKVGPEVILTDNCKEECNALNSVWPSCKLLLCIFHMLQQ
VWRWLHETSHGINQVDRPYILSLFKKSLYAETEELFEDCFSELLNDDKCKCYPNLVDYLGTLYIEKEAFALCFRTELRVR
GNHTNNFAEAQFLVLKGTILRRVKEYNVVGLISKLTVELEDHYKDKLFSIADGSFDGLYRRRFMGKGKDGSSGFRTPDLR
ERDLYLSTVEKFNNNVFKVRSSSKNNER
>MuDR-1x_SP#DNA/MuLE-MuDR 2504-5942 via tfasty with 17534253_Cel, 1 frameshift. [Strongylocentrotus purpuratus]
MFYHKTKLMQHLEEDHGICLQKSELSFATVEKFLAWKEREESQNFAYFSKERGAIQSSLCIHQTYACQRNGSSRSHKAKG
SPARTTSRKKSQGCVKTDMICPARIITAKCLKTGNLKVTYYSSHSHRLPISDIKFHPLPQKLRDDLKLKIAFGVTVEDIL
KDLSRPNHSNIGNLTVFKKQLNISRHHMQQMRRNIFKRAEKNPEGLDSISGLAILLEKHRAEGHNPIMMYKPEGGQYIIG
KLEGDSLAVEDSPVVVGVQTKQQLHMLQLFTVKYLCVESVQYQNYLLVNVSMRDDYGRGSPVAHLICSPDDQAALFYFFQ
IIAESFNKSMMAGVLTDESSSCINILLAVFGENLSHVFCKRLVHHDWLHQLQVLVADKELRREIYTSLVLLMEETNLNQF
TSMTSTFLNRYQSKDKSFVVYFKESYLDRCPQWATCYGNYSSDPNHTTMYDEAFHKPLKAYLDSESKEGEIYDLVAFLVK
TADEHSDQSLLQSCLQPTQTVGLRSRHEEALQIPLECVTRMMAKMYSVKTETELLHVKRVKKFCPEASCSPQCLHVSCVE
LCPHLYTCTCGEESHLCPHIHRVHMQMQSSFLVNIKMQLTDPSRKSSTSSAPLPPPQKKLRRSPRQAQKEAAIQAKESVA
NSDASEGTGKNGEDAAIPKGDAADDDDVDDDDDDDDGDDGGLFMANTYEPEDNNAQDPGLIFNAEPVPIEDDETSEVNLT
KILDVNDELLALLENKKVQASLFPYILSELKAIVAKCKAQVPADSLDNLWRRAKRKAATPLPLLQIKMRETAVIKKALES
KLTSGQENSVEQGRVLDAQGGGTQVTKPEATLPQAPAAATNSSAGFKDLLSYIITSAAQTQPGNAVYMVPGTATSTMPSS
CEGIIPSTALTQVRENSPVQIIMNAPATSHIQTLHTASSTSGISEPSPLEAEAMQPLVAPLQQTQRHLFPPATAPSGMID
FSSLSSQLVSSLPPALSSATQHHSQQEPEYIPRQPSLTPAGSVLSQTIVTQIVQRAAPSPYPYKEHSQSLPLTGANQQTG
MTASYLASQLGHHMMPPQPLAQHLPSPYTFTGTGQPLSHQPAHSLPQPRQYLPPTNQTLQPLQPSPFMSTIQPQPLHHLT
PNPSTSQGQHLHQTDPNFKTTTHPMY
>MuDR-3_SBi_p3#DNA/MuLE-MuDR 7675-8352  [Sorghum bicolor]
MSGGSSRGKGKGKAAMKGNPFLWEGPLGPKDFEEAIYDRFPLESKHDFTKEAPLRAYDDRKEEWPKCMHGEDCLVQMYTE
GIDGGRRFFKCPRAWVSHITNSTFNKILSCAKATYLLQSSLSKENCGFTRWVDPRPIHPHAEYIYYLQDRIFDLETEVSC
GYKDDEEDDNSNATGSQNTICNDPYCTCPNHKNKGPPSPPPPPPPPTTGGYYGEGATQFAMWPHY
>MuDR-5_ZM#DNA/MuLE-MuDR 142-3111 Via genewise with 34908366_Osa, 4 introns [Zea mays]
DDSIDQRLVPKVGMTFSNVDEAYKFYSRYAYEVGFPLKRYRERKNCKWLNCSMEGKRAERGYGNPKVRNTISKRTQCKAG
MKLKKIYDDAKENIISVRIDLIHLEHNHEFFRKDTEKNQLQCNKTHDPEYMEFLSAMQESRIPQHCIMDFVSEMHGGPEN
VPLTTQDMINLKKARQRERNANDVSKLLSFFALCKKDNPQFFSDFQLDQEGKILSIFWSHASQQADYIDFGDAVTFDTTH
KTNLYDKPLGMFVGCNHHLQCTVFGFTLLGDETVDTFEWVFNAFKTCMGAEGPRVMLTDQDPAMPVALGRVFPNTIHRLC
LWHVQNRYMPYLNELYARFEEEDFKTRFQSIIHHPLTVTEFETAWAMLIDDFHLHDNISLSRMYEIRKDWIPAFFKHDYC
GLMVSTQPRTYTRAVMNKFHESLKYATAYKISHDPDGGVNEWVVQHTSRSNKIVWGQHQFKVMADVDAGKYECECKHWEH
TGLLCVHLLRTFMHLQIDRIPSEYILQRYT
>MuDR-5_Mad#DNA/MuLE-MuDR 1271-3193 [Malus x domestica]
MLSLLAKCFESREDLIGEVRKIALMQGFATVIRRSKTNTYVAIGCDRGGDYRASKTSLDERKKNSGSRLINCPFEVRGRK
KKCEEFWKLEIKSLLHNHELSNDMCGHPSCRQFSQEEILRIKEMSKAGIPPRQILSSLRQGNPHLQVVSRNIYNLRAKIV
KESLAGRPVIQALLEELGEGGFTYNIEYDHEGHLTHLIFAHPLSIELTKSYPYVFVMDCTYKTNKYKMPLLDIIGVSSFN
TSFYSCFVFMQNEKEEDYVWALKMFSKILGVDNHPMVIITDRELALMNAIRIVFPSTSNLLCVWHIEKNILANCKAHFEE
EVDWIDFISTWTILIQSPNETSFNEAWSRFEVKYEEKKFVLKYILGTWLPYKEKFVSAWSEKVTHFGNRVTSRAEGAHAT
LKKYLQVSTGGLREVKEKICLAIENQFQEIKTQLSSEKVRVSHKFRLPFFKEVVTHVSRFALNELYNQYEASSSSDLPSQ
CKGHFLKTMGLPCAHMIREMNIEVLQLNDIHPQWRIDRRLFVNDRHVSLDNEQDQISGLLLEFKDKYEKLPLTQKEDTKR
QLCEFIDTSLPLTLEPNVKPHKGRPMGSKNRKESSSTKRGPSKFEIVEKAQKRARRVCHFFYLSFNIVYYGHDYLYIRIT
>MuDR-1_NV#DNA/MuLE-MuDR 192-3137 GENSCAN_predicted_peptide_1|856_aa 1 intron [Nematostella vectensis]
MADKPDFLKDLISSAIKEVHSKKRSFELSEITDEYFLASLPDDSFYYLKSISGNRENFKAHVLTEDITEENLELWISEYE
VINNVSIKLKTKKNPTSGYVLQNYYRCQHNTRNWSPSKDPQKKLHINPSARVKNTNCPFQMIVKLDNKGCCSLDIEWEHN
HSLETLEASNFLDLTPECTERVLKMYESGHTPATARQQYLKELKESCNDDLEFHRKKANRAVVPRRRDFSYLYTQYGKDR
YGGQGVMMYQRLAERLEQYSKDNPDATTHHQVYGGEDKPLLVAIVTPLMKRVHNEVQQSGEMVFVDATSNTEEHNLKVFV
MCTHNVSGALPLGILIASDERESTLKQGFKMLCSCLPEYAFNGRGKENGPKVILTDNCKEERNALKSIWPLSTLLLCTFH
MLQQLWRWLHESKNNVNLADRPFILNLFKKSLYAETEQEFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFALCFRKE
LPVRGNHTNNFAEAQFLVLKDIILRRTKEYNVVGLLDKLTIDLEDHYKNKLLSIADGSFDGTYRHRFMGKGKGKGKGSFG
FNVPDRKELDGYLSSVESFGNNTFKVGSSSDGSQSHTVDMTIGMCTCGIGKDGSPCKHQYVLWVSKLADCVNFVPVNNPR
ERQKLAWLAIGETLPLSYYMPLRSTEAEQITLQPCGPNECGTVIEKSINRDQEPNYTTGEEIHDEDKSIIANAQQLMRSS
CDQIIQNLQSSGDLNLAKGIIKFSKRVTTLTATRSMNSNLVSALFSFGSNELKKTGSGKKIRVQPNRKQKCGSGSRQAVS
KGRPVQLQEPTSKRKRSHDLAKVVQANVNSSKKSGSHTMKSKTKHIQKKKTKKEKS
>MuDR3x_SM#DNA/MuLE-MuDR 456-1886  [Schmidtea mediterranea]
MATHMDSINFGVSIKGRRTVMFKNFEYIKARENKNGEVYWRCKMYKSYKCNAHLKTFEDRIVSTQDPEHTHQGNSATSLA
RLAVAEMKQKMGETSATPAAVVGVVSRHLENDVLQALPKRSTLARCLQRHRNAALKQNDNGATLPPLPSDTTFIVPRRFS
EMLLYDSGPEGDRVLIFGSSDLLDGLARAKLWIADGTFKVVPSIFFQLYTIHFELVQGNNPVGIYCLVTNKDRTTYDIIM
HQLRILIPSANPERILVDFETAAMSAFQAAFPNAAISGCYFHLCQSVLRKANEVGMKQAYESDNIVRVAVRCIPALAFVP
VADVNDAFELLSDEISELHERMPELLSYFEHTYIRGRRRAGRVQNYGPSLFSIQRWNHHEAAAEGIARTTNAVEGWHYGL
QSLFQCHHPTLWTFLDGLSKDLQKQKASFLQGISGVNQLPRKKYRELKERVGRAVNLYLAANVLTFLKSMAHLSHE
>MuDR3_ZM#DNA/MuLE-MuDR 693-2461 via tfasty with Jittery, 1 frameshift. [Zea mays]
SSFIPDVDPSLKPMVGMAFDSIADVEKFYKGYAHDGGFSVRIGQHKKVNDEIKGKYFYCAREGYRVQKDKKDIDQSGKKR
KKRHNVMETRCGCAAHIYVNLGTDKKYTISSMVEQHNHGLVSPLHRHFLRSNRHVTERAKSTLYNCHKASIGTSLAFRLM
HVSDGGFQNVGCTLSDLKNYYRDLRTKIKDADAQIFVSQLERKKEVNSAFFYDFEVDDHGRLMRVFWVDAISRKNYSIFG
DVVSLDATYSTNQYNMKFVPFTGVNHHLQSVFLGAAFLSNEKIESYVWLFKTFLKAMGGAAPHLIITDEDASMKAAIGMI
LPETTHRLCMWHIMDKVPEKVGPSIREDQEFWERLNSCVWGSETIEDFETQWPSFITNFQLTGNEWFSTRFLIRESWIPA
YFMDIPLAGILRTTSRSESANSFFNRFIHRKLSFVEFWLRFDTALECQRQEELKADNKSLHTIPKLMTPWPMEKQCSMIY
THEVFNKFQSQVVVARDQCFVQGITENEEYKVVTISSLSGKERVVYFNKSNMFGRCSCKLFESYGIPCCHIIQVLRAEKQ
NEIPDYYIMKRWQKRCKRFVFYIPLCNLDM
>MuDR4_OS_p2#DNA/MuLE-MuDR 4339-5085 Similar to MDR1_p2. [Oryza sativa]
MSALVDRWRPETHTFHLTVGEMVPTLQDVSYLLGLPIAGPAVGPTMVNAGWADDLLASFGGVLPVALEDLTDGHGPTKSW
LNQFRQDVFPDDQEEWIVQRHLVAYLLWLFGWVMFTGTHADSVDKHFIHFAEQIAELPIAEIPQYSWGSAVLAATYAGLC
DACVRNSKQSSLPGCSLLLMLWAHERFDIGRPQLDSYANYGLREMYRSGVDDIDDRPTMGSLWTHREVIFVKFVYVIIMN
TSSQTFLI
>MuDR6x_AP#DNA/MuLE-MuDR 499-2036 via genewise with MuDR2x_SM, 1 intron (647:809), 1 frameshift and 3 stopcodons. [Acyrthosiphon pisum]
MLLNKSFLYSIHYVYETKVVWRCIEYKKLSCKSRCHITTKEETGMYIKIXTDHSHAPNLAKIEDKQLVNTLKDTAITEQT
SVRNIISNVLGQTSVPVIGQLPVIKSLSRTIQRTRVTKENAPVNPSNTKDLIIPETYKLTNKNEFFLAYNSGSSESRILI
FTTQNNLNMLKETDDLFGDRTFKSVPSIFSQLYTIYCYARSLVIPLVYILMTSRTKETYVEVLRQLLILQPDLNPKSIKI
DFEQPFISVFKQIFPNAHVSGCFFHFGxCVWRKLNLFGLQKKYAEDSTFALQVKQLCALAFVPVLDVVESFNTILESQYF
IDNEQLFEPLVDYFEETWIGRTVRNRKRKPLFQIEMWNCYNNVINDHPRTNNIVEGWHHAFNASLGCHHATIWKFISFLK
QEQGLxEAKIEKIILGENNPIKKRKYKNIDQCLKNTVENYETTNINTYLKGIAHNFNF
>MuDR5x_AP#DNA/MuLE-MuDR 483-2157 via genewise with MuDR1x_SM#DNA/MuLE-MuDR, 2 introns (649:851, 1947:2004) [Acyrthosiphon pisum]
MPLQFIVSQKGNKLLLHNGYLHTFYKEGVNKFIWRCSEYKTYKCTSCYTTTREEIGDIIKESVHYSHAPDIAKVKIKEII
TNIKEEAKTSVLTPRNLLSRAVETLPTSIIGQLPNIEKISKTIRRERIKQQKPPANPVNVGDLIIPGEYSVTNKGDMFLF
YDNKIQKRILIFSTLENLNMLKECSSWFGDGTFRSVPTFFSQLYTIHGTKNKQSFPLVYILMVDRSKDSYIEVLKALKSA
VSSLTPQRIMDDFEMAFISACKDEFPTTEIKGCFFHFEQCLWRKIQSCGLQQMYXGYDVEFSMQIRSLSALAFIPTINVI
RTFEELIDSTYFLENEELLSPIINYFEDTWIGRPNRNNRRRSPQFDFXMWNCYDSVLKHQPRTNNAVEGWHHAFNSALAA
NHVTIWKFINFLKQEQSLQEVNMEQSLSGEPSPKKRKKYNDYDERLFKIVSQYNEITPMNYLRGIAHNLKF
>MuDR-6_SBi_p2#DNA/MuLE-MuDR 8588-9448 R [Sorghum bicolor]
YVVFSIFFYTAINVPKTKSSGDAFKTRFSLHRIRDCKFNQEQIGWINEAGLGALLGMSDFSVPVNLVAWIMKHIDPDLRE
FRRKDKVIVFDKQLICNILGVPSGDEPVKLTCNADEYEAFLKIREPFMVGVRGKLSQCIDVLKTANDKTTFLRAFMLLAL
GSVLCPGTDNAITPRYLHNLKDVSLIRSFDWAGHILDNLMNEVRKYQTFSKQDEGATECPYLGSCLVVFAVCSLSLLCCT
HPYFHCNDFADLFQWYYLICCISYLYMFDYISFHILQPRFPNVGPS
>Vandal17_tp#DNA/MuLE-MuDR 835-3308 (one frameshift; ~ gi|11994228|dbj|BAB01350.1| Mutator-like transposase [Arabidopsis]
MGIIIYFDYDGYYSKTGEAYQWNPKVVGLYGILFRTSSMEEITYSWLVDKICTKMKIDESTMKLKLSYIPTGVKPPTYLY
IRDDDDVYVYLTTLDEEKSRSVLHVEVGNELEMVHLNEQQSRVQGKSSVGVNYEEENFGGLDNDDRANVGAITLYANEPL
GEQLAEPLETLEPLEPLEPLRDVDNGVDSNVSMSKENDGIREYVEEPRDSQHSKFKGPWDDGLDLVIGQEFENSDDVKYL
VETGANRNCFGLTLLNSDKKRYVVKCAEEGCEWYIRFSKAKDSTRFSVRTYRKLHTCVRSNTATGIKRRGTPRLVATVLH
EDYPGQYKTPTPKSLIGLVQGKHGTTVSYSTANRGKKLAVSDIRASPEESFKMVYQYLYLLEKVNPGTKTSVVLDEEKRF
KYLFVALGAAIEGFKVMRKVIIVDATFLKTVYKGVLIFATAQDPNHHHYPLAFAVADGEKDVTWKWFFETLKTVIPDSSE
LVFMSDRNSSLIKAVAEVYPSSHHGNCVYHLSQNVRTKVAYNKEEVAKTFRRIASICSVSEFEHEYAEFRRRHPKVATYL
DENTDLEKWARCHFPGVKYNVDTSNAVESMNGVFRDVRGYALLPMIDAIIGKFAEWSCNNRKEALSGSNAQRLVPFVENE
IHETCEVAQKLPVIELNTYELQYSVIGRDGKTYVVDLRNKSCYCRCFDLDKYPCVHAIAAVMTHLKQKDRSEEVKSLYDL
ITKYYFVEMWVMAYVRTIYPVPHKSEWVIPSEIQELFAYPPVHVVKKGRVQETRHPSVGERRPKNKRVKGRNLESWFFPN
HESDSQGSGQYTSGN
>OSMU6#DNA/MuLE-MuDR 770-3186 Via genewise with MuDR_ZM_mudrA (1 intron, 1 stopcodon) [Oryza sativa]
MLSLSSEVRWGEQQTATVWFLDKGSNEDVRIVHESQLVDMFEMYKSEMHAELMVLVVESVLCDASANNIEPTSMPLCVLP
LTQTGQGASASKVAVSSEPATQEADETLPNVFDMEEEYVGVDDEGIYIQPIHTIPPTDHAETSGQPSAENAEPCAENAEP
GGPSGTAQPHGEVEVTDDDPAEFNVLHNPEMPMIKEEAVFPDMITFRKAIRHFAVVTGFELSNLQTDPTRLIAHCKHEGC
KWRIHASRLSDGKTIQIKKLPFAHECPTTKLMEGKMATQDWIADRLKDWLKKNPDKxAKAAKEKLEERYEIKLKYSKAWV
GRRLAENQIHGTYEDSFQLLFNWKAEIEKRSLGTIVTIDLQKLGKNMCFKRMFVAFKTCVDGFVNGCRPYIGVDSTRLTG
KYTGQLASATSVDGHNWLFYVAFAIFDSETDDNWLWFMKQLHGAIGAPERLVISTDACKGLEKAVGAAFEKAEHRECMRH
LYGNFMKKFRGPIFTLHLYPAARCFTEDGFRDHMQQIYNFCPEAIDYLDKHHSRIWYRSGFKETCNCDYLTNNASESFNN
QIKSLKGLHLHELVDSLRELFMEKMYLRRQVGEKLTDGILPSVIKQLNAATTNLKVVKVARSDDDMAEITLVESDNNTRR
HTVHLINQTCSCRKWQVSGKPCNHALAWICSNRGVEIKDFVLEYFSVGMFRAAYAGRVPTMPDRSQWPVVNLGFKVCPPR
LKRGAGRPRVTRIRGALEPGARRVRCRRCHGFGHFAKTCKEAEAPEDTDEVPTASPKKR
>Vandal20_p3#DNA/MuLE-MuDR 7457-6870 from RepBase 2 exons [Arabidopsis]
MSLVKLGDDDAYYLAPVILTNKRGRDIALSRDIVKSANLTAFCLEPPKIYPGGVARSFFTRQALYYEALRLVTRERDIQG
SLALLNELVPEDESATVAYAMFQMCAERGDLAGATFDMIFESLGDRLLFNIYSEDLEAECEGLIDTLLAYEPANEDTFGP
IWEFAYSKRINVPDCAYWHEGEHYCEGCYIFNAALRICEI
>MuDR-1_DF#DNA/MuLE-NOF 2900-6106  [Drosophila ficusphila]
MPYGKHIDFVAXVDALCSVDIFTETGAIKPRRDNVWTEAXNQLHGKINARTLNFYARVNRNDVLNMVKKRCGFAQSDKTA
NSTXNCTAPDDDPEFQVTEPXKSEPLTTIYLNLHMDEEVWKSIAPKADQDKDLRSRNNLQNNWTDIVAKLVYEKVPLPCA
FSFKRAKLSGKADSIWLQIEGRCSECNSILKGHCLTEPHLDSGITISVSVPDTRGIPHSKKRKCTGSRRMEIGEELILKK
AALWRKEATKDMNEDDPEPSHLPSLPTLRKLREEATNKHLGIIKDRDPITSLYLKKYDGELAGCILDIGLDEFFCIYCTG
AQIKTYATRIKAVQKISVDATGSVVMPIKKPNGDTSYVFLYQIVMEGDDSIFPVFQMLSAKHDTASIQFWLSRFITKSGH
FPQEVVRDFSLALLNGISLSFNECRLSTYMTKCYQHLSNEMPTQLPRCYIRLDIARLIKMMCRKNVFKGKLPNVKDFYIR
CXGVATTCETKETFAQMLKSTLIVALSESSGEDEKGEILASFKNEKYLLTRIATFTAPVYEEELNENEFLPEQTEXVSND
ISDFISXIKNSAEDEASMCNSAKCRPNPYYLPELVQHLLKLGQYFVLWTNVLKTKFSSKYDVGSSALVEAYFKDLKNTDM
SIFNRPVRADKFVVQHIRCIEAVCKLERAAMQRKNYDVPAFIKDTLIKEKDRAERKGLPEETQNNDDMEYLMNEENWKVK
NNTIKPIEFTEDCEPETSHMAVEATKSNKEIEIQDGTSGKPRGKYLKKCPNVELIYNRPHRRKRDEILRNGGAMGPVWIG
SQLLQFKNTCPFDSLVEILSTAYIDNFFYKNELDTYYTDNLTVALVKKYAVEGISQGLYCDRGLILMSFFDQKNQIIYCH
ANIGTFVDQVLNGIPSATTRRSHENNSECESHGSLHHRLELADAKKIRDLGLHKGLLAYLEESFKTTREVCKRCGGQQIL
ERDPGPHXIVDLEFAMESAFHDIFKSGVKGTATLLQLPPEILIRKQKYXLSGAIEYVSATGPGIGHYISYCRRITGFWEV
HNDMCRQWRKRTALKTEMILHIIIYTRSG
>MuDR-1_CI_p1#DNA/MuLE-NOF 1365-2729 Fragment? via genewise with MuDR-4_HM_p1#DNA/MuLE-MuDR, 1 introns (1987:2454) [Ciona intestinalis]
MEMQRHLRIFVLHELFKNATPPLQSNRRFFPTKKDISNHYYIAYTKRKLSKIDQENVQLLVDEWCHKLPEDNILFRPYVA
CAHPKQINKDIDGDDITTMEAKQTLLFVYQTAWQKRLLLRYGQDICLLDATYKTSKYALPLFFLCVKSLKTNVNYQVVAC
FALQNECQADIEEALEMIKIWTPGWNPKFFMTDKCEAEINAVEATFQDCKVLLCDFHREQAXERWVRKSDNGVGDRKQTV
LSGLRAVAKAENKEELEIALNSFKNNEVYTDNPKLQKYFQNAWWPEKQVNNYSPVRYNF
>MuDR-17_SBi#DNA/MuLE-MuDR 644-3075 via genewise with OSMU4, 1 intron (1408:1514) [Sorghum bicolor]
MNAEAAFRLCVHFSEFTAKLDDGCCVDVPQNYDEWTVDCRCYTLDMLEKDLAARIKWGSAQQLVVSEFVMSGVGERKLQN
DTDLSLAFIERKNERKMLLVVSVVDKPIEIDWDSLQITPLTLIXGAPMPVIDEDTIYEFLGLRAEDERVEQARAVAAEKG
KQTALEPVDELVVDDHVPGENSVLYDRENPPMKEGTIYASMSEFRAALKHHAIVEKFEIGTEKSCKSVFRGYCKADDCPW
SIVARLMHDKQQVRITLNKEEHFCPSTGRVKTKMASYTWIAEKAIPFLKKNPSMGSKELQKELEEKYDVTLGYSTVHLGH
EVASKKLFGTWEESFGYLFNFKAEIELRMPGSVVEIDVINQEDGVYFHRFFCCLKPSIXGFLNGCSXFLSIDSTALNGRW
NGHLPSATALDGCNWMFPVAFGFFSGETTDNWTWFMQQLHKAIGNLQHLAIISDACKGLENAIKTVYPWAEHRECFVHLM
KNFSKRFQGPAFGRMYPAARTFQPDYHEYLMNKMYATNKQVEPWLKTNHKLKWMRSKFSEHIKCDAITSNVAEVWNNWVK
DIKDLPPASLADSLRSKFMELYARRRRIGEKFEGHIMLPVVVRQLYALSRELAHLKVKEGGREEAEVTEVTDSQKIIRHV
VNIRNHICTCREWQVSGKPCPHAMALITTCRNPKMEEYLHPYFSVYHFRLAYGGVIRPLPDMSQWARVNLGFKVLPPLEK
REPGRQRKLRIPSCIENKGNKPRGKGKWQVTCKKCGGLGHRSSSPKCPMNGTKKR
>MuDR-7_TV#DNA/MuLE-MuDR 816-2498 [Trichomonas vaginalis]
MEPVIFNTMELLQFGIQEEIKASMGYSQKCRKEYSTIEYKCKYPQCQAKFKVRIIDQDKYELLIHSDSHDHSAPPKSTKT
ISSLFVRNYLKHYFENNMNHATAQLKCFQDLNISYTDEELLSIFAQGPDALRKFAQRAEIVSKRFSSDEKVSLAIFVESV
QESCPEDLIEFISEPGKLVFLYAPFEAKALGHQISTFHIDSTYKLLRANIPLYALTGKTEHTIVFPFLYFFISPDTSENI
QYCVCRYFQYINREPEMISMDCAPQIAEAIERGIPNCHILWCGVHVLRAILRKADKFKSRDNFEEFYNLMKLLVFDTKEE
SPEEEQNQEEENPREEPAQSHLLQAEEIEEEEQYEEEFIENEFQPSQIFLPRESSDDPNDSEFIPEEETFETSEEVPEHL
TQEEAADLDAVYDRILEILSTEPKAQKYFDRQWRHHLDRWNKRYRNGGDATNNVSESHFKVLKHSYFPERRNIRLDDFVV
ELYTTVVPALLIKFKVQLINSDKVVRILRKANDHEQILENKKVECLKMLEAIYSSLQQGSIDSNLVYCTLKVLLKKKQLM
>MuDR-6_VV#DNA/MuLE-MuDR 3184-5745 [Vitis vinifera]
MDSLLTIVCYKDGEIIDGPNGVCYSCPPKKGVLVNNLIKYDELEDKLCHVMSIDRTHTMLSMIFRYPILMSIGNGNINYI
QLPIKDDDDVRLMFHVVAQIPPSNTIEMYLQTRPRDHSSELSPSFDQEIMGHDVEIPAKGNLAVQIDEMDENLAHNDEMG
GNLAVVTQSVMGATNNYVDIPFTNENDDVEFYDEDEINEMHYDDEPPTNKASSDDGEHIMPSPMFKQLNWDAINSMTAEP
LTSRTGLWNESNELFKGLRFESKEDLQYAVKRYAICRNQHLVVCESEPQLWAVRCKKWQEGCNWRLRACRRKSHGMFEIT
KYAGPHTCVYPKLSQDHSQLDSTLIAREIQNVVQRDHTTSIATLHQIVKDKFGYDVHYRRIWEAKRKAMLRVFGDWDESY
QALPKWMNILQLTNPGTKIVWKTIPLGGISGNVRFMRVFWAFGASVEGFKHCRPIIQIDGTFLYGKYMGKLLIATSIDGN
GHVFPLAFAIVEEESQDSWSWFLIALRHHVTQREGICLISDRHAGINAAVRNPSVGWSPPHAQHRYCLRHVVSNFNDKFK
NKVLKELAYRAGCQHQPRKYERYMEELKRLDEKSVAWFSKLDTQKWTQAYDLGYRYGWMTTNIAECINGVLKGARMLPIT
ALVQLTFYRCVSYFETRRAEIRARMAVGDVYTAYAIEKFRRAEAKASGHTVTIFHRIHETFEVITALHGFHMDKGRNKQV
VKLNEGTCSCNKWQSFGIPCSHVLAVSAHMRIDSWQLVEKYYRLDAYASCYAPEFNPIPHESYWPYPDFPILHPDPTSMR
DKGRPRSSRIRNEMDLKEPSVRIRCGLCKIAGHNRRNCPTKDGGQSSNPLPHDN
>MuDR-9_SBi_tp#DNA/MuLE-MuDR 1040-3760 [Sorghum bicolor]
MDYGVRVFYGGSVRREDCQFEDMSEDLEWFDGPPSFSDLCERLSLKFGDAFTLKGRFDVGKNRAHYVMMDLCNQAEWSRY
NRVIQGSNVGMAELVLETVENEEPSFDDGGDCGVQVQQTMESMDLDGNWTQERVQSPPVGQIRNDFDVDEFEQEENEAAE
DEMIGDDVCSDSEESENEEVGSPGMCAPVRGMPSGVPLEVLHATQTQGNLATGYPGDGEEYEGWGRVREAEPYVAPPSYT
SAELTQLREAGLPFTGVPNYMDVSMSHMAVCDTGLQICKESLYNHENLILRKGMLFNTMSEMKLFLQDYAVYHHRPYTVR
HSDKEVKFQIVCKAGFPCTWKLNARKRSSDGKWKVTSVEQPHRCQTNKGKRYHPQLTARYLARRILGLVDADNDVSVSFL
QETIATFVGYEVTYGKAWRAKQIALAIRWGSWEEAYNRVPRILCAMQHFNPGMRWFIYTGGFYLQNPLRHILYRVFWYFD
QCKHAFQYCRPVVLVDGTFLTGKYRGTLMMAAAVDPENQIVPLAFALAEGENNDSWSWFMRLLRLHVLGPSRTICLISDR
HIGILNAAGEHIDGHPPLVHRWCMRHFAANFWRRQRKKEVADKLKELCNKRTEHEFKETMAELQKMMNRAGKAWLDQQME
NKAKWALAYDEGGFRYGIMTTNSSESFNRVFKGVRSLPVSGIVEFSFKKCNEYFVTRYGLALRNEEELGRWGKAAHEYLQ
EAEELSKQQVGEAYGRDRLVFSVRARGGTNLGGERFGGRTYRVDLEKVECSCNVPQIMHAPCSHMITSCRLRGFDHTVEP
YMSPLYLRANTLNVWEKSFEPYLDESQWPPYYGEDYVPYPDLRKVGKGRRKKKRLKGDMDNMKGYGDDMYGGGDFNEERA
QNLCSICKKPGHNARFHRRGRQEVVY
>MuDR-15_SBi#DNA/MuLE-MuDR 623-3601 via genewise with OSMU5, 2 introns (1625:1717, 3295:3372) [Sorghum bicolor]
MDPDSSYNLEIRIVAPNSRARWFSLNLAVDADRTCFTGLRDEVVDKYPHDYGHVASLFYLCTETKAHIPLRGDHDLLQMF
ARNIASRTCFITVAYHNPDTDPCLPDWDSPSNVASVEPSVEPPFTPSVACPGLPTHSTTAGPSHYSKSAATNSETASEEA
NQDDNPEYLANPNPEYEHVGVNDESLYIDIGPTLDPVPVHAPAPAPAPSNLQRPVGRKQSDADANISSDSEEEYSNDESS
DDECSDDVMVEDRLPEGMPDANYDKMNPPMAVGTLYSNMEAFKIALATHAVVHEFNYDIEKSDPGRYRVNCSQKIYGCPW
RLHAGTVKDGQTVKVIKNPDKHENCQSTRRQGICVGVTQWWVCSHVLDWLKQDATLGPTKLQQKLFDAFKIEVPYKRVFK
GKNLAMDKIYGPWDESFDNLYKLKAQLELASPGSWLNIDHIIINNKARFNRLFFALKPCVEGFLRGCRPYLAVDSTFLNG
RYRGQLCIACAVDGHNWMYPVAIGVIDSETNENWVWFMEKLKEAIGTPEGMTFSTDCGQAVMNGVSEVFPNAEHRECMYH
LVQNFKKRYSGKVFDDHLWASSYAWTEYMFQKHYHAMAEAKPEAMKYLQETHKKLWTRSQYGLLSKVDYVTNNLAETFNN
WIKPEKGKHLDDLLDTIRQMILIKWNHRKKVAMKFTGKILPHIMQRLREESYNLDMQIITDSPDGVAELVAKGREDGFRF
VVSLPDRTCSCRVWQCSGIPCKHAIAYITSKPGEKLEDHVDDYFSVARFKAAYEGSIPCIPDKSMWPKGTHGFFLYPPLL
RATGGGRRKNRFKGALEGGSRNKKKAGKKHKCSICQQLGHHWYTCKNGDPADIAAMEAARGPPKKRLKKAQAANTEMSLV
AVPTPTPTEMVWPVNEAVKNATHNKRKKRSATKKTCEAGPSSSASRRTAASGSNSR
>MuDR-15_GMa#DNA/MuLE-MuDR 585-3291 via genewise with MuDR-4_Mad, 3 introns (1763:1857, 2828:2899, 3092:3174) [Glycine max]
VFATRDDVLQWARSVAHENGFVAVIMRxDTNTGIRGRTSFVLIGCERSGQYRSRKKDFVRRDTGSRKCGCPFKLRGKPVV
GGQGWMVKLMCGSHNHELAKSLVGHPYAGRLTKDEKTIIADMTKSMVKPRNILLTLKEHNVNSCTTIKQIYNARSAYRSS
IRGSDTEMQHLMKLLERDQYIHWHRLKDEDVVRDIFWCHPDAVKLCNACNLVFLIDSTYKTNRYRLPLLDFVGVTPTGMT
FSAGFAYLEGERVNNVVWALERFRGLFLRRDALPGVIVTDRDLALMNAVKTVFPECTNLLCRFHIDKNVKAKCKSLIGQK
NAWEYVMDAWGSLVDCPSEHQFDxCLKKFEIACSPWPMFVDYVNETWIIPHKEKFVTAWTNKVMHLGNTTTNRVESAHWA
LKRVLQNSLGDLCSVWDAMNNMITLQHTEIKASFETSTHVVGHVFKVTLYKRLLGMVSRYALNQIAAEFERVHYAGKNPS
RCGCVMRTTHGLPCACELSKYVLGSIPLDSIHMFWRRLSFSDQGLSEPQVTIKEEMETISKRFEELDVCGKVTLKSKLRE
IAYPDQNSMCPPPEKVNTKGAQKKPMNRNQRSTKRDPSYWEYVDALHSVQNSNSSVKRSASSSDQPIPRRTMPMLDQFQP
FIHDFIDNIVDVKADGNCGYRAIAALLGMGEDSWSLVRNHLLKELGKWSDDYIKLFGGTDRFEELRRSLLVDGLSMVTMD
KWMDITEMGYVIASRYNVILVSLSLQQSMTFFPLRSQPPTDSSVHRIICIGHVYDNHFVQVYLKDRCPLPPLALLWSRNC
HPQAKQWPTPYISRMHQYR
>39594847_Cbr#DNA/MuLE-MuDR gi|39594847|emb|CAE70715.1| Hypothetical protein CBG17457  [Caenorhabditis briggsae]
MQCDSKKKNENGTELFYCVERERRARCDAAYLFDRRNNTFTVKKQHVRHDEDFVRSEAFLARQELKKCANDGKPREVVDD
VRAKFSRVASVACGSYDAKRKIIDTAKGRKEDDVIEMDKGGNIANVFSQTKDGQRFLVKDEQFKQQLAHHGFLYLLQMSV
LSCLLIRIRFFATAPLIVFRHHSLNSSHYTHTYLRLSFAQLFFFLLTDKQTSSYEAVLKIVLESHPSLTQWKPATVICDY
ETGLKNAFESQFPRASVQGCLFHLVQSWRKKAEKLQCYNEFIKGNIQDFWVRIKAIPFIVPTETKNFFDIIVSTIPTPIP
SNVKTFIDYLIKYYMEDTVRYPPKMWSCADRTMNGIHRTTNVVESWHKLLSSVRSQKNGLAPLMLPDILVKLKSEEMHTK
MDWNELKINPNFQVNRNRKLTNALKDGRFIKTLISANPAKYAFDWSQFIRHHLRRPFCLKVMNSFFFNTYFLFSNCFFLT
VFK
>26554410_Mpe#DNA/MuLE-MuDR gi|26554410|ref|NP_758344.1| transposase [Mycoplasma penetrans HF-2]
MAKKEKSSTEKLLEKLGVENKEDFDNLLKELTKSFIEKSLDVEMDGHLGYEKWDQNSREFSNNYRKGKTKKTLNTKYGKL
DVEIPRDVNSTFEPQLVRKHQRNLNDIEHNIIKLYSKGMSTREIQDVFLDMYGVGVDKDLVSRVTDKILPEILTWQSRPL
EDIYPIIFVDGIRFKVRDDSQFLEKSVYIILGVNLEGIKEILGFWIGETESAKQWLSIFNDLKSRGVKKVFISCSDNLTG
ISDAFKSAFPETYIQKCIVHQVRNSTKFVRYDHLKEFTADMKKIYQAPNFDVSMKALKIFTEKWSSKYGYATKSWNNNIE
ELTTFFQFPAEIRRLIYTTNLIENVNRNIRKITKAKGGITSVNALSKLIYLRLINISENWKSRVANWGLILQQLKILFEN
EI
>46190959_Blo#DNA/MuLE-MuDR gi|46190959|ref|ZP_00120748.2| COG3328: Transposase and inactivated derivatives [Bifidobacterium longum DJO10A]
MSQQILQVDQAMLETTLDRMVRKSVEETLNAMLDAEADEITGAARYERSGERKAYRAGHYERDLTVKAGKMSLKVPKLKG
AVFESAVIERYRRREESVEEALIDMYLAGVSTRQVDDVSQLLWGDRMPSQTLSDKLKKVYADIDEWRGRPLEQDYPYLFM
DGVWHKRCWGGSVENVSILVAVGVGMDGRREVLSVAEGMKEDSESWREFIKGMLARGLKGVRLVTGDRCAGLVAAVNELL
PGARYQRCMVHFERNILAKVNPKNRDWAADALKAIFSMESRDKALEKAESVAKDMEARKLREAAKCLREGIGETTTYLLD
DYPREHRRRIRTNNMIERLNREIRRRTRVVGSFPDGRSALMLICARVRYVTSSEWSTRRYLDMSRLGENVQSAN
>48762981_Rru#DNA/MuLE-MuDR gi|48762981|ref|ZP_00267539.1| COG3328: Transposase and inactivated derivatives [Rhodospirillum rubrum]
MAEKALTAVIQEAYIQGISTRSVDDLVKAMGMSGISKSQVSRLCAEIDGKVATFLDRPLEGDWPYIWLDATYVKVRQDGR
IVSVAVIIAVGANTAGRREVLGMTIGPSEAETFWTEFLRTLARRGLRGVKLVVSDAHEGIKAAVSKVLCATWQRCRVHFM
RNVLAHAGKSGRRVVSAFIGTAFAQDTAQAASAQWRQVADQLRPRSRKLAELMDDAETDVLAYMTFPPAHRTKLHSTNPI
ERLNGEIKRRTDVVGIFPNEAAITRLIGAILLEQNDEWAVQRSRYMTLESVAPLGDDALTRLPPIAAA
>48675369_Bsp#DNA/MuLE-MuDR gi|48675369|dbj|BAD22831.1| hypothetical protein [Bacillus sp. JF8]
MAQYQITLDSQLLHQLFLSNAHDAGVAKLLESVLNQVLQAQATEQLGAEPYERTEERQGYRNGTYPHQLTTRVGTITLRV
PRIRNGKFSTELFARYQRSEQALVLALMEMVVNGVSTRKVAQITEELCGTEFSKSTVSELCKRLDPVVTAWNNRPLDDHP
FPFVIVDALVLKVREESRVRSRGALIGIGVNTDGYREVLGLMLGDSESEASWSEFFGWLKSRGLQGVDLIVSDDHGGLIR
AIRRHFQGVTWQRCQTHFIRNILDATPKELQDEVHSWVRAILDAPDLDTARLLLNQVLETYETKAPKAMAILEAGFEDAT
AVLLLPEKYRKRLRTTNALERLNEEIRRRERVIRIFPNRESAMRLIGALLMEIDISGVARITGCPHESESYTHWLTDAYC
SLSRPRSVLYRLDRLLTTNM
>17555878_Cel#DNA/MuLE-MuDR gi|17555878|ref|NP_499739.1| putative nuclear protein of eukaryotic origin (3O384) [Caenorhabditis elegans]
MSISFPEKEELDAESDPSGAKRFFRAFDRDLKKKRNPKASTTNVCESTPATIDLVTPPASPRRSDSYMQFPSNSRELDEP
RSTDDIPECDSIANSTQETSLDTTDSMANTERFFDFDPAVFPEEMDHDLQETSEFNLLCHNSYQSPFEDEETPYHPDWFL
TNSKSHVLRSLMHYRPIANSPRGISTKRGAPLVIFNNQSYRPRETLKNGDIVARCNVTLENSRKCPGSVRIKTETGHVKV
SRDCDHESRRSEIAVQLIMRKIAVSSMSSSPSKERLYELAVTLSKRYEVVELLKSNKEISRILDGMLSRKSTNSFPPALD
SAYFKGGKCCLDSSGTFESNKDLLVVWQAEEAESLYGAHSLHLDGKFSEIPKNYRQLYIATVTDLDTNVAVPLVFALCGS
AKEDLYRRKRWLYLLNLSTYPDFEVASVNASRAVWPNADIFGCWRHFKVNLFKNLRKAVGDDINKPEFVNLLKSIYTLSF
APHDKVLLWLRLLKCRTVNMHPALKDFFSYLEKFYFGEDARYPVDFWNCRERVRNGLEFTNNPSEQQFSKLKASFFL
>56754251_Sja#DNA/Merlin gi|56754251|gb|AAW25313.1| unknown [Schistosoma japonicum]
MLTIDRLMDNLSEENITNYLQSIGLLRNAFQCGCGTEMAFNKSNDSRDGVIFRCNVCWCKKSVRNGSFFARSRLNLRQIM
LLVLYWVLGIQVITAVALTDVSIIAAIQWYDYCKDVCSAVLLRESSSLGSGGKTTEFYEASVPKTNHSKLWKRKVDKDEY
FYRKFLAFKADKPLGNFERFLNDIKIIYSL
>Polinton-7_NVi_p2#DNA/Maverick 681-32 R, via genewise with Polinton-5_NVi_p2 [Nasonia vitripennis]
MDRTRDYDLLFKNTILQCQEENVYICDIQGFQRIAEDTFIFKEISFLNLRKTALPTAYLFKPPMAWEELTEEEKCMTQWI
EKSHHGIAWNSGDIPYHRLHKILQICTQGVEKIFIKGEQKAQWIKNxLPxISISNVEDFGCPPLEEIISENQYFCFNHDL
CIRRKPMCAVHNVISIRAWLLNYLEDTFGLDEIDI
>56758764_Sja#DNA/Merlin gi|56758764|gb|AAW27522.1| unknown [Schistosoma japonicum]
MESPSAVMVAGVRTGSFFNQSRLTLWQICMLVFLLVLQLPVTLAASLIHVSEVSSVQLYQHCRDVSTEMLLRLNLSLGGV
ERVVEIDETAIRKRKYDRGRSVKTEWVSTSYFNLTGSFLVFTTKH
>4335673_Mav#DNA/MuLE-MuDR gi|4335673|gb|AAD02885.2| transposase [Mycobacterium avium]
MLTVVHDQDSSNEDACGSRSLLDEIVRDGARQMLAAALAAEVAAYIDAHAGEVDENGHRLVVRNGYHREREVLTAAGAVT
VIAPRVNDKRIDADTAERRRFSSAILPAWARKSPQMTEVLPLLYLHGLSTSDFGPALEQFLGSGAGLSATTITRLTAQWQ
DEAKAFGERDLSGTDYVYLWVDGIHLKVRLEQEKLCLLVMIGVRSDGRKELVGLADGYRESTESWADLLRSCRRRGMTAP
VLAVGDGALGFWKAMREVFPATREQRCWFHKQANVLSCLPKSAHPGALAAMREIYNAEDIDHAQVAIKAFEVDYGAKYPK
AVAKIVDDADVLLEFYRYPAEHWIHLRTTNPIESTFATVRLRTKVTKGPGSRAAGIAMAYKLIDAAQARWRAVNAPHLVA
LVRAGAVFHKGKLLERPVDITPPEPAESAETEVA
>1279534_Mce#DNA/MuLE-MuDR gi|1279534|emb|CAA65977.1| putative transposase [Mycobacterium celatum]
MTKHYPIDVEQLLDEQLAAASPDLLRGLLSTFIQALMSAEADALCGAGYGERSEARTNRRNGYRPRDFDTRAGTIEMAIP
KLRSGSYFPDWLLQRRKRAERALTSVVATCYLLGVSTRRMERLVESLGVTSLSKSQVSAMATELDEAVEAFRTRPLDAGP
YTFVAADALVLKVRENGRVIGVHTLIATGINAEGYREILGVQVTSAEDGAGWLAFFRDLVARGLSGVALVTSDAHPGLVA
AIGATLPGATWQRCRTHYAVNLMSVTPKSSWPWVRTLLHSIFDQPDAESVVAQYDRVLDAVTDKLPKVAEHLDTARDELL
AFTAFPKQIWRQIWSNNPQERLNREVRRRTDVVGIFPDRTAIIRLVGAVLAEQHDEWIEGRRYLVLDVLTRARAVLTCTD
ETTTHQPTTTPALTA
>50543034_Yli#DNA/MuLE-MuDR gi|50543034|ref|XP_499683.1| hypothetical protein  ? [Yarrowia lipolytica]
MSRIRLPHHVQASVQRSDQIFKSRKLAQSYVDEIAAKHGFAVRFNNGQGYMACTRNEAKPTRKNDTRCKGEYDERVRKTR
VTHTGCKFSLAIKRAYNANEWYVVDVSDAKPIHNHLPSVCSASNARYRAQQLEEIRAQFKSVGADESKSDSENDRLDICD
IFMDVQAAPRQLREALRIISPKGYAVTSQDVYNLYKRRDKDLFGDMDPMEALLVLLEKTPHFHCSYRLDDDPAFLDTEAV
VGDLQEDNSDDESDDDTEVQTVPTKRAPEPAPVPAPIKKRRGPPKSQTGSSQSESATKPSSPPPEGSPPADDEAKRENVV
CDIFFLHRKSIKFMRTFPEVIAVDCTFNTNGYNYRLFNIVGVGSDNRSFPIAHAFISRENADTFAWCLNELKKIMEEFNI
PFPEWILSDCSKAFLKAKSLGGFPGKIRLCDWHADQAVLKRASKLFKSDTAFDKFMEAWYLMKGANSKTQFRKFYSKFKN
VYWKPGTTEPDQKDSTSVGRNNRAYFYIKRNWFGDPDSDHPDKIKYRHMLVKAYSNGTEDFFNKTTSRVQSLHALQKSNM
RSRISSLFSSAMTVIRVSLDILADLETEHSQAMEKYEVALSRDFNDCLMPFISVLALRKVAEQAQKGKLSSQQAEGTGAT
SRTSKCCTESFMNTSGLPCIHYLRKILAKPKDGATMRPNAEVNNAPGKSEEEMLFPVLMLGDFHPHWRNLHATLMMGPDD
WDSATNYGRHRDLWRKLQCRLEKDKEIDEMWRKKDEAMLQEVASGNDFVRLKTKGDIADTFVNGTRRSTGRVKPSLDKGK
ACPICKKKESGHAITKSCFPNNAAYERYLEKNDPESRLERIALDKRNLQKAGLVESVRNAYVTAGDDSDNEFPVL
>IS1535_Mtu#DNA/MuLE-MuDR IS1535 gi|15843026|ref|NP_338063.1| IS1535, transposase [Mycobacterium tuberculosis CDC1551]
MFAELIRAGLQALIEAEATEAIGAGRYERSDGRIVHRNGHRPKTVSTTAGDIEVQIPKLRAGSFFPSLLERRRRIDKALH
AVIMEAYVHGVSTRSVDDLVAAMGVQAGVSKSEVSRICAGLDTEIEAFRTRSLTHTEFPYVFCDATFCKVRVGAHVVSQA
LVVATGVSIDGTREVLGTAVGDSESYEFWREFLASLKARGLTGVHLVISDAHAGLKAAVAQQFSGASWQRCRVHFMRNLY
TAVAAKHAPAVTVAVKTIFAHTDPEEVGAQWDRVADPLCQP
>IS1164_Rrh#DNA/MuLE-MuDR IS1164 gi|1402520|dbj|BAA11042.1| transposase of IS1164 [Rhodococcus rhodochrous]
MTTAHDIDLRQLVEDRLTGASPDLLRELLTMFIHALMGAEADALCGADYGQRSDERVNVRNGYRHRDFDTRVGTLDVAIP
KLRSGSYFPDWLLQRRKRAERALTSVVATCYLLGVSTRRMEKLVDTLGITSLSKSQVSVMAKDLDTQVEAFRNRPLDAGP
YTFVAADALVLKVRENGRVVNVHALVAVGVNADGYREILGLDVTSAEDGAGWLTFFRGLVARGLSGVRLVTSDAHAGLVA
AIGATLPGASWQRCRTHYSTNLMAVTPKSSWPWVKTLLHSVYDQPDADSVHAQYDRIIDALTEKLPKVADHLDAARSDLL
AFTAFPKQIWKQIWSNNPQERLNKEIRRRTDVVGIFPDRTALIRLVGAALAEQHDEWIEGRRYLGLDVLARSRTDKPADS
VTEGTEEVTPALTA
>MDR1_tp#DNA/MuLE-MuDR 1029-4097 [Oryza sativa]
MDRLVRVYYGGRVVEPYVGAHVEFEDMSLKTILFPTHPTLDELRSRVKEVLGWTEDNVEIRFYGRYDVGQGHKYILNVIG
QLEWEVYFDLVKESQFRSLEVFASKLVRTVENLDLNKSPSYHYVEKNFVTYYSRRGGGASKTELVREDLEGEGEKKRPLL
GNDLWEAGPSKRHCGTDDVDAAREMKRELVQEGLDLSEHLSASVHWSSYGVNPEYPTEVAGQYVNPDDYFDVELSGGHDS
VSVEVNRDDVDEEASVEQYDVEFAEDSDDDRPFPPLTNNDKLALEECRAFEKVFGRKPDIPEFRDLTHAHGALLDGGINL
DQLPEPFQVDGLRKGLEFPSMVALKLWLQEYAIVHHRPYRVVNSAANRRYTVKCENPRCKWKVHATKRSSGTWRISRVGK
EHSCATAEGSGSHRQLTSKFIANRLCNAIKLQPTLSASALALYIFEVFQYRVKYGKAWRAREEAMKLIYGEWGEAYVRLP
TLLQAIKQRNPSMVYHIDTHPDRVVNVDGVTKKIFMRAFWCFGPSIEAFKHCRPVLAIDATFLTGKYGGALMTALSADAE
DQLVPLAFALVEKENSRDWCWFIDLVRRVVVGPHREVCIISDRHAGIMNAMTTPVPGLPPVHHRWCMRHFSANFHKAGAD
KHQTKELLRICQIDEKWIFERDVEALRQRIPEGPRKWLEDELLDKDKWSRAYDRNGRRWGYMTTNMAEQFNSVLVGVRKL
PVTAIVSFTFMKCNDYFVNRHDEALKRVQLGQRWSTKVDSKMKVQKSKANKHTARCFDKQKKTYEVTERGGITRGGVRFG
ARAFKVEGEGNSCSCQRPLLYHMPCSHLIHVYLIHAIDEESPNRMPYQFSSRAVVNTWASRFEPYLDPTQWPPYDGEEFV
ADPNLKIKTRGKRRSKRFKNEMDSGLGGSGRKPPSCVQLDAAPVQNRCSLCHQEGHKKTKCPKRPKKKKSKKNISVREVN
ILFSYSCSRIHFLLIYVTLVTNGEFITFSCRMAEEGQPPTYPALEAYYEARHRGAAIEAGRV
>MuDR1x_AP#DNA/MuLE-MuDR 388-1840 1 intron (554:738) and 1 stopcodon [Acyrthosiphon pisum]
MEFTTSTRGKKMVVENGHKYILAYTSSKNVERWRCSNKICPAKILIQDGKIIKKHDSHNHVQQXARQNVSTQCKRVAVED
ISIRPRKIILTEMNNHITNTDFTISDVSAIRKSIYHARKKSLPSNPKSVSDVHKALNDLHLTTSKNEDFLFINDELSNII
IFTCHENLKFLCKSVYYIDGTFSYCPKYFVQFFVIHGFINEYYVPLVFCILNNKSTETYQLVLSYIKNKAMQNFSLMFKP
KYVTVDFELAIHLAVKSVXPLTEIIGCRFHLTQAWYRKIQSLGLTSAYKDNKWLKFTFGLTFLDPNEVSDCLVDDFMSEI
PDDPKYRKYADYLVDNYIGENANFPPNIWAAFAADLTRTTNNCESFHSHFNGQFYKSHPNIFTFLEILIKTVQTDVYIKI
NSCVKNIPNPRKNAQVITRLKKL
>MDR2_p2#DNA/MuLE-MuDR [Oryza sativa]
LKTLRVRGHTAHILFDDRYVPYLRRAKLLAFVTMAQRPVPLYNAAALTALVDRWRPETHTFHLPCGELTVTLEDVAMILG
LPIRGQAVTGDTASGNWRERVEEYLGLEPPVAPDGQRQTKTSGVPLSWLRANFGQCPAEADEATVQRYCRARVDRRKNKK
VTDWAYYHQDHITQWEKFEENGVPDQGQHNRTEFDLYLAWLHRTYRLVLRP
>IS285_Ype#DNA/MuLE-MuDR IS285 Over 160 protein entries in Genbank! First one: gi|2996347|gb|AAC13227.1| transposase. Very similar transposases in Erwinia pyrifoliae and E coli phage. [Yersinia pestis KIM]
MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNT
PRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALY
PIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDA
INSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNT
FFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSD
HL
>ATMU4_p2#DNA/MuLE-MuDR 4138-3975, 3910-3659 [Arabidopsis]
MSCKSGNSYPSILDGGCWGRGLASKCHCGLEVVIYTSASKSNPGRPFFRCPTKQDDHLFKWVEYGVYEEVVEALPKISSI
DSEIMKAKCEVAIEIEQLKTMIKEVKEEAMCSEREIKNWKRMIKCCLVCLGFIVIVIVV
>ATMU2_tp#DNA/MuLE-MuDR 689-2973 1 intron Atmu1 85% similar (and with stopcodon)  [Arabidopsis]
MCMDPDLMTWSIFDDFPKENGVSGPVEKVWYKLAHEDLVSVRAISEDRDSGIRQLCNEALIGGEVDVYIQQGVSIPSPFP
LSQPTEEVVVEEQSDDEAVEEEDKSAEEERLETDGVDPVEEVRENGVDPRFRAFYEEINAEEAHQVPEEEAAGDETHQYQ
QEAAGGEETERDVAGETELDDEDFEMQCMDNERPDPAMDTDEEWDAFDREERETSRAKYSKDKPPYLWIKQIFHSGEEFK
DHLLRYVLKANYDVKLCKWAQTQLMAICRHENCKWKIYCSVDKRLNKMGVVKTYVDEHEHAISGKARMLKQGVIARLFRD
EARRRPTLRWTDIKDEIMMRYTISVSKWICQKARRLAFDMVIQTQREQFAKLWDYEAELQRSNKDIHTEIVTIPQDCGKQ
QFDKFYICFENMRRTWKECCRPIVGLDGAFLKWELKGEILAAVGRDADNRIYPIAWAIVRVEDNDSWAWFVEHLKTDLGL
GLGSLLTVISDKKKGLINVVADLLPQAEHRHCARHIYANWRKVYSDYSHESYFWAIAYSSTNGDYRWNMDALRLYDPQAH
DDLLKTDPRTWCRAFFSTHSRCEDVSNNLCESFNRTIRDARNLPVINMLEEVRRTSMKRIAKLCGKTMKCETRFPPKIME
ILEGNRKSAKFCSVLKSSENIYEVPDKRKKRGRPKKFDRIKEPGESATNPNKLTREGKTVTCSNCKEIGHNKGTCKKPTV
QSAPPRKRGRPRKSMVRILTLSWPIFKHTTILAFFLTIVVGG
>ATMU8_tp#DNA/MuLE-MuDR 383-2798 Via genewise with ATMU3_tp, 2 introns [Arabidopsis]
VSNSAAEVEDPARCEIGGPPAVDGSVVASLSVEDGGLAQPNVLGGRVSRQSRKRRRVVEKYEEKPELEVAQDIEDDCAVY
GDDDCNGVDDAIRGGDNDAVEEDANDANDADGEDANDADGEDANDAFEEDANLNIEEDFHEAFRVDEDGSDHDSGDDIWD
EDRIPDPLSSDDEDEVRGEEETTRRDENEPEGLLALEKTYNSPNXFKRALLMYSLKTRYGIKLYRSASMIIAAKXSYIDE
DGVKCPWRIYCSYEKKKHKMQIKVYVNEHSCVRSGYFKMLKRSSIAALFEERVRLNPKLTKHEMVAEIKREYKLEVTPNQ
CAKAKTKVMKARSASHETHFARIWYYQAEVINRNPGTEFDIETVPGPLIGSKQRFFRCYICFKSQKETWKQNCRPVIGID
GAFLKWDIKGHLLAWAVVEIENDDNWDWFLRKLAGSLGLIEMTHLAIISDKQSGLIKAIHTILPQAEHRQCCKHIMDNWK
RDSHDLELQRLFWKIARSYTIEEFNNHMAELKAYNPHAYDSLQLTSLLTWSRAFFRIGTCCNDNLNNLSESFNRTIRQAR
RKPLVDMLEDIRRQCMVRTTKRYLIVDKLKTRFTKRAHDEKEKMVDGASWCERHLARNNLHEIFVNNVGYFVDMDLKTCG
CRKWEMVGIPCIHAASVIIGRRQKVEDYVSDYYIKRKWLETYKDGIMHVQGMPLWPRLNMLHVLPXPWRRGNSGRPSNYP
RRKGRNETASSANQTKMSRARKIMTCSNCHQEGHNKKRCNNPTVLLSPSRPRGRPRINQV
>IS256_Sau#DNA/MuLE-MuDR IS256 gi|79910|pir||JS0296 transposase - [Staphylococcus aureus]
MTQVHFTLKSEEIQSIIEYSVKDDVSKNILTTVFNQLMENQRTEYIQAKEYERTENRQSQRNGYYERSFTTRVGTLELKV
PRTRDGHFSPTVFERYQRNEKALMASMLEMYVSGVSTRKVSKIVEELCGKSVSKSFVSSLTEQLEPMVNEWQNRLLSEKN
YPYLMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFEYLKERGLQGTELVISDAHKGLVS
AIRKSFTNVSWQRCQVHFLRNIFTTIPKKNSKSFREAVKGIFKFTDINLAREAKNRLIHDYIDQPKYSKACASLDDGFED
AFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSRKYINFDK
>CUMULE_p4#DNA/MuLE-MuDR 10919-11668 R)  Perhaps part of a multy exon protein [Cucumis melo]
MTSTSTSTDGPFYKINPSHHFYSLVSCLSHLEKTTHNIKAKLKPDQLALFRKTKFGHFLDLNIVFNGPLIHYLLLREVED
EGKDSISFLLGGVVCTFGRREFNIVTGLWGPKEDYIQLGGNSRLLEKFFKDKDCVYVSDLEDIFLEYEGDDDDIVKLALV
YFIEISLLGKDRRTKVDIGFLKIADDWNSFNNYDWGRIVFVRTLSALKRALDKQYAKGKKKSTQTKKYTINGFPHALQVF
DFLLLTSKL
>HAT-2_NV#DNA/hAT-Tip100 607-2898 via tfasty with 47085813_Dre, 2 frameshifts and 1 stopcodon. [Nematostella vectensis]
MARAPVCRKEDCSPYDIGLVFDKIASYSPQDKLKFIENVWKPGELFDFPVSIENGKSRKFVLNWLKKYPWLAYSKYYNGV
FCLACVCFGVQCGRNANKLDKLLKSPLTNWTSAASRFTKHAQGNCEIHKFSMIAIEEFKKMMRTDAVPINLQLNNIVQQQ
IARNREILRSLFKTIIFCGKNNIPLRGLRDSDPTNAALAGNFQALLEFRVDSGDQILEQHLENAPRNATYISKTIQNQMI
STVGAHILNNLSQEMRDSKYFSVMADEAADIANKENLSVVIRFLDSTKNIREEFIGFYICKEGTTGEAIKDLITAAVVDL
GLMMEDCRGQCYDGAGNMAGRLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQIPNVRNMMDVVRKLFxFFDNSPKRQ
EHLEFKIIELLQKNKNKKNTHCLINVCRTRWIERIDAMDRIVELLHPVTATLEDISMNRHKHENTNWNPTSRQDAQSLLN
AINFSFIVAIVIVRHILALTKPLTVKLQSKAMDILKAKEELALLISVLTEMSNDIDATHHELYQDAVTIARQVDVQPDMP
RVAQRQTHRPNAPASNPEDYYKINLTRVFLDHVLEQLDSRFKDDVFICYKGISIIPSVLIATDDWKPNVLEFCNYYRQDM
PNYIGLQAELLLWERLWKGRDNRGEVIPDTLRLHWRILTDAYVNIYFMLKILITLPISSASCERSISSLRNLKTYLRSTM
TEDRLNGLALMYTHKDMDLDLDRIIDLFAQLHPRRMRMANILT
>CryptonF-1_CGlo_yr#DNA/Crypton 492-3029 via genewise with CryptonCn1_yr, 2 intron (673:778, 1633:1838) [Chaetomium globosum]
GRPLPGDLVDEGKLLLFMKTEVISRAPWRRPRLQKQRKRRLDAAVAVGQVVAAKRRRREEIATAPAAAVETKVEEEDEPL
IAAPALELAYNSVRIYIAAMQRLYDEQKSRHINxAPRPQGIALKALKKSILAVVWARKRKEYSDRLEGTIKDTYTKAQIP
RHHEVAWREDSGEISCLLRTQVDFLFGNHMLLRQSNRRPMELPDCFRLELPNEGQKSKEFPTYALVVVMNQGKTNQHGRM
EYGAALRHRDARCCLVSALAFYLFWRWQVEQVEPFPTFQCSEDWYDIKVLRRSAKEATKELSAQTANSWTSRLYAACGIR
TSKISHAPRVAAAQNADMDGxSEGQIRRAGRWNNGDQLTGCYLxSLPFEFMRSTADFDPDWSGSYFLPRDTVKPPFELCA
RIWPSLDRWKxIYNTGSSSMETNKATGAFFELLDWxREVLLQDAVFLQKLYPRHPLFQDPVFQSPQFASFALQVENACHA
AEEDSYVATIDRAIPAVAEKLRALSSQQTAANLWTERAFVELRxQVQRLEKKMEELAKASYTITISPGRSTVTQRVGMPK
RGRPRAPGRAPTATAMATAPRDDSTAPVPPSSSNAAEAExGAVLQPDTATRLPLPPVxPSVPSAPSAPSVPRFEVPLDIR
RIPDLWHLWRYGRAGMPSVESLEARYGAAWRPKSQKSVFCGRKAIVDFILRKSRERDGLQSAAEHAPRVIAQMEELCPKW
SLDKVTKAIKNGDLERRWPXEA
>CryptonCn1_yr#DNA/Crypton Cryptococcus.neoformans   from_retrobase [Cryptococcus neoformans]
MLAGIDEPADPDTVQDERQMLLNGVNDLPDFKELRESLGYHGADSSLEHLLQCNQSLASVRLYLAALVDLWETQRQAGMN
AFPSPRTKATNSILNALRRVRNEQSILRCDDKGDDLFYDGIATTENMKKLFLHYLHRDSVEGLRDLAAQAVGIHGLLRAD
DQLRITLSSMSLRLFEDEGPTPCRGVVFAIREGKTTHDGQIQYSTLLRNKDVTRCPVSFLVLYLFARFHFSEEPFINSDV
SFPSLKNRQDWYHIPLFVSRQSNAVTRLKYDALNKSVRKALQSCNIHCRASTHTSRKWGAQLAEDGGAPEEDIMRQGRWC
TKVMETVYLSKFPLKALRALAGFPKKKGSYYLPRDMEVPQELIESVFPWVDAAEAELFDPDRFQGDKAGRAFIKLMDWFR
SVLIQDAPFIRQLEPDLFVWKHPVFSTPTFLAFEARALAEAQSAEARMSEDARQLIPELSDYLSTNFTALFKATYNIDTT
LTGLAASVASNSQLIQEERRAEKYDALLNGIGDAFHAMARRQHSGSISSRSNVNAQESQTTSVLEGQHHGGFNPSASSNS
VASQPNSASDSGDLVQLEALVYKMDREVGDVLELWDEYIVGRNGRLPVREMSQRNEFKKNEAEKKMFNRRKPIYEAIRDL
ARGMNMGEREAAGLIEEYRIKNSMGLNKLSNVVKEVVKNMIVHQSYRYRTL
>CryptonF-1_TS_yr#DNA/Crypton 164-2773 via genewise with CryptonF-1_PI_yr, 3 introns (563:622, 799:933, 1679:1729) [Talaromyces stipitatus]
MYEVPGTRPPSVITRRYGNQAPXFIHHQLCLXTVASILADQMQCGVTEIDALSRIAAGLIVRVDYAMDRLLSLLPRTAPL
QIQVPDIATTEIEPPRPEDIAIQKALDEVLEYHRVHRPKNTTKNYEPKQKEWKAWCKKMGFKEGGRYLPGDYVDEGKLLL
FIKEEVASRPPRRGQRLKAERKRKRTAAAEVLYCSAINELWAHQTSLGLHNAARPQRVAMTALKTSIARGQHQRRRDEFT
DRGLATIRDGYVASQIPDLTRKVWAQCLGQNQIEQQFRTQLCFLFGNSMLLRLSNRLPMELPDLFSMPLPNEGPKGKGWC
LVTVMDQGKTNQHGRLEYGAALRHRDHQSCLIGALATYFFWRWHCSGESFPCFRTSQDWYNIKVLKRDNNHLTEPLSDST
AASWTRRLYSEAGIKSSKVTHAGRVSGARLAELNGVSEDQIRRGGRWNADQMTGCYLTTLPRSFMRGIADFDPDWSSSYY
LPRETVCPPPALLKRVWPDLDRWQAAHLERTDATERVEPNIAAGGFLExLQRLRTVFLQDSVLWRTEFPSHPIFRDPLFQ
MAEYKAFELDIHMAVTTAMEEDPHSIAIQKAIPAVNDRLRTMTAAIQTGQVTHSQALRSLEDLMVSRIDQLTATINDFIG
GTFTCQFVPRGQIVPPPITGAAFGPTAPIQLPVTALEKASQAPQYRMLRNTTTIPELWKEWTVGLNGQLSIERLDELYGS
GWRSGPESSAERQFYSRRKTLINEIRRLATVEDASLGDPCQTVVAKLEEERIRAGASLSKVIDALKRS
>CryptonS-1_ALai_yr#DNA/Crypton 270-2351  [Albugo laibachii]
MGLDDLLPGNTKRARATAVNAFLRFIQSEDVDLEYVRSCVLRDVTGQSFLSVMDKFGVYLAFHEGKCGKPLARHSCMQYY
RQVKHWLLEQFPHLRALLEVRLLKMGRTLENYCVKREGGGFVKKAIACTKSDLRRMMYYLYANACSSSDYQDGALLSLLW
YMFGRASDLSLVRKQNVSVDAGGVFFVRFIRVKTCEEQGLSIFPDTDFITCPLYAIALALITQTAPHADLLENLPVQLPS
TSVVLSPETPLIDLLDHPAAVIGHQDTITTGPAMSSTLHIHVNRLLDRVAKRAGVEQQLTSHSFRRGGAQHANSSSQLTA
RWIFDRGAWNMSTTNKAFNYVFNTASEDHKVSKVLSGRKPTDRVPLADLNTFDAQTQVKIAEVQALLFTTCQKLGSGKYN
VCQRVLDVLTAYLILHYPLMKVMHPDGPAVKRLEQCVVARKCTVHELYAWSTHLVATQVSYAQEEEHXSGDKESTENEDR
RVIRHQASVIEHFIAYAKRQDERMDALETKLDDSRRPRQDERLDRLEAKLRGPIKQLKRPSEEVDVLYSTKHRKQSSVTH
LHAKWYTWYAQEPRLWSVRGEKRKKSDAKTLVAFMKLFLSEGFKLNEEIPSYRDDVISLGLEAEAHVVTFLSERGIQSLG
ASAVLKKLRTLHHAGALDDLIVRHRRLLAAGAITDPAPLYTQDILDPAAYTLQL
>CryptonF-4_PI_yr#DNA/Crypton 232-2194 via tfasty with CryptonF-2_PS_yr, 1 frameshift. [Phytophthora infestans]
MDEYTRDDIANSQEIHQVVTDIITDHAAARPSNTVKQYAPKQAEFKTWCAGKKYLDGCIVTEGKLVTFLKTHVIPRGNKR
QKTKAGDAKALSLAGVEAYAKAVIDLYKLQQALLLNSHPHPRGKTYHDLFDTLKRSETERKRKNYADRALGTVLDGYNVE
DMVQLTDYWLSQNDGVSLRDRVDFVLGHALLARGESRRFIEFPDMLTLELPDEGSQTCTPLVIIMNRGKTNQHGRIEYGA
AMRCKNVNVCPLNAVALHLFWRWQIDCEPFPDFTCRERWYDIHLINGGDRTKEISYNTQLNRIKRAFAACGIDSTVWTHA
NRGSGAKLAETFGASEEQIRRLGRWNAARMEGCYLTSLPKKAMRALAGYPTKGGGYWLQRGSATPSSELQQLVYPEVEAA
VKQLAQSSTREIAGAAFIQMLRHMRVVFLQDSVVLRRQYPNHQLWKHSLFSTAEYASFDQELYSLIPAITQPETKSLAVV
VPQIADVLKNGMESLHGKLDALAAGIDTLKALSNKRLVLSWEDSTSGHDPLQSAVTQPPFTSCAIPRSLQPRNPKLSRSI
STVVDLWKEYSVGLAGNMSISEANEKLGSKWRKDPTEARFYLRRKKYYDAIAKTATTHNISPNEAAEKLELARKGDNLSL
NAFSKRLDTYTIQL
>Transib-15_HM#DNA/CMC-Transib 1036-3194 Via genewise with Transib-2_HM (1 intron)  [Hydra magnipapillata]
IPRIEIFEILKNELSSDLDDQLDILQSQLCLRRKICFQFSTDDKKKLKNVLTKLKIKWKSSNRTKKIFLKTHDTWLKAST
NICVKKKSHSAMGRPPLNFDEASERTKRRKTEEMRSTFSSSELAFASQMSLRASGACNAGVTVKDLPSTIQHRVANYIES
LKLSQISQTSELCAETALSILMEAKLSKHQYCIIRSAAIANSSSFLPSYEKLKEAKKMCYPEDITVTEISAEVKLQSLLN
HTCLRIIKTQQDVIDSLNVNILSNFILILKWGFDGSSGHSEYKQRFADGRNSDANVFLTSLVPLQLLCTNSVLGQDVILW
KNRTPSSTRFCRPIRLQFLHENVHTSINEKDYIEDKIKSLVPLIIVQHKIEIKIHYKLVMTMIDGKVCNAITLTKSTMRC
YLCSATSSQFNNINFVKEIKVDESKLEYGLSTLHAWIRFFECFLHLGYKLGIKKWQARSDIEKSIILQQKLLIQNAFKLQ
LGLIVDRPKPGCGNTNDGNTARRFFKNSQVSADILGVDLELINRFHVILQVLSSGFPIDADKLDNYSTETALLFVEKYPW
YNMPTTVHKVLIHGALITKTAILPIGQLSEDAQESRNKDLKKYREDFSRKNSRKNTMHDVFCRLLVSSDPAISSLLKSHA
KVSRSLSSQALQMLLPPEINENSETHSSVIEFINNISIINDSDDSGDLF
>Transib3_AG#DNA/CMC-Transib 46-2070 [Anopheles genus]
MVSLQVREIVDQFNFGDSQITNINKALAYVDTKARNRELDIEAARSEVENIYLRAQLQWDQCNRVRGTFEANNAEWLASK
FPTQLLSNGASTSNTNSCSLPANYEQSSELAERMKIRFMEHSEESANERTSPTRIARRKAYRLKEYNIMKQISLLLQSPR
DLLISTDHSDMLSDEEVLAFYIDLGLTEAQYKSMSSLVPSRFPSFNAIRRAEALCVPFHEQIVTTECAVKMEMQCLVEYT
VRRILEMQKKVLRDFLTEKQLNVLKLRCVFTYGIDATSGHGTDVLISVLSPIKLHLDDASHHIFWLNVTPQSYRFCRPIS
LQLAKPSKALVLQTKHSVDEQISNLKPMHIVLEDDKAVDVEFEFVLSMIEGKVLSYMLDDSSTTCCLICCAAPSEMMDAS
ILASGFIGQEEPLVYSISPIHCWLTFFELLLQLSYRMDFKEWQVPEVQRTTFNERMKTVQQRLYEAFGVRVAEADAGSSS
STNTMGYISRRVLADPALASTTLNIDQDLIERFRNILIAINSRHPLHPAKVQQYCSDTYRKYLELYSWSRVPAAVQKVLA
HAGQLIVRSPLRLGYVGKKSGEIEHNYFTSDRELCARTTSKQDALKDPFVEALICSDPKISSISLSNRIKRKKRAAYPDV
VASFFIFDESYCETDDDDDSNSGDDDEDDLDSLD
>Transib2_DP#DNA/CMC-Transib 737-2638 [Drosophila pseudoobscura]
MMERFMTTHAKWMASKITIIVDENCKTPKKMGRPTLHYTNAGTRLKRKLASDLANDNNNNTNLLMHAAAVSAKKERKTDV
AFVVTKTIRTPEYPTESKKHLQLQKPIPLSPDEALAYLLENSLNKQQYTNTRLLNKRHNCDIYPSYNKVMEAKLQCRPEC
IEVMETTARVPLQNLLDHTAHRIIKLQSDVFKQFPDASENKLICSYGFDGSTGHSIYKQKFLTEIPGSQLSDHSLFVTSV
IPIQITDTYHRNIWTNRTPQSIRFCRPLKIDLVKETTAHIIIEKKDLDFQINTLKPFVYKLVENVDIVVTYEMHMTLIDG
KVLNVLTGTKSTQCCPICGVTPTKVLEITDLSSETFTPKLGALKFGVSPLHAWIRFLEFVLNISYRIEIQKWHIKGDNKI
KTSIRTKYIQEKIWEDMGLRISMPKQNGNGNSNDGNTARRAFANTKLLSSITNFSVALLNNFHIILIAISCNYYINSEKF
RSFCESTFCLYMQTYPWYPMSPTIHKVLVHGFQINNSTLVPLGCLGENASEARNKMYKKDRLSHARKNSRVNTMTDIFYR
AIDSSDPLLSSVCLKERERKNKKKPLSKEVLSLLELPSTESKDSCEYENDSQSDSDSDYNIYDIELEEEDEVI
>Transib5#DNA/CMC-Transib 780-2564 [Drosophila melanogaster]
MVHKEGYPRRKTECVEKICKQIVYFWTRYNRKKASFLKYQCEWLNQKKTILLKCNHNISEKIMESDHRGRPKVDFSMSSS
RSKRRRLAELAKIDETAVSALLNEFEKKKLLPADPIEIISLLIEASLSKNQYLLIRNFVNTKIGFDLFPSYQSVLHSKKM
RYPENIFVDESHAEVELQSLLNNTASSILELQAEVVETLTDNCVKNLLLIGKWGFDGSTGHSEYNQKFSNNDLQDKSLFV
TSYVPLQLISKDNQQIIWKNNRPSSTRYCRPVRFQFKKETTKLSIEEEKYFKEKINLLNPTEVFINDKKINVEHSLQLTM
VDGKICNALSESSSMKCYLCGASPTEMNNLAKCMSKDVKTEYFEFGLSPLHAKIRFFEYFLHLSYKSEIKMWQVRGSDHK
IKVMKRKQKIQKEFREKMGIIVDKPRDGGKGSSNDGNVARKFFSNPKLASKITGINENLIYRCATILQAIASGYKININK
FNTYALDTAKELINEYPWYYLPATVHKVLIHGSAVIQHALVSIGELSEEAAESNNKELKKCRLNHSRKMSRITTNADIMN
SLLIRSDPFISGHRKLGKKDKSALFESVYALLEEG
>Transib-4_HM#DNA/CMC-Transib 1361-3331  [Hydra magnipapillata]
MSSINRNQIHLFIRENKLSLSNEKDKLVVFNFISEQLGNSKCKVQFSKFTFEYRKRWAASGRYNDIFLDKNLAWLCKDFI
SPQQTFSLCNTETTPKLSLGRPCKSFEESSDKSKKRKVSKLESLASSSNELLFASSCKLWKQGRRKHAKVVRNLSKTQTD
EHVQNTPNEALALILDNNLSKSDYQRLRNNAVRKGCNLYPAYNNVREAKVLCLPENNLWTVTDYSAEVNMQALVNHTALR
LIECQAEVINSLEDLQRMTLRSKVGFDGSTGQSLYTQITTEEENRNITNEASLFLTCFVPLQLSGYCNGEKKIIWSNPHP
SSTLFCRPIRFSYKKETSDVLKEEEQFLYNSIEKLFTTKYDKLTVLHKIEITMVDGKVATALSTATKSSQCCSVCGCNPK
KMNDLNTAKNLPITKTGLNYGLSTLHAWIRTMECLLKISYKLTIQKWSTREPSEKKIIQDRKTSIQKKLRDEVGLLIDFP
RTCGSGSSNTGNTARQFFQNAEKTAEILQLDVIIIKMLHVILCTLSSQYVIDSSRFRDFCMQTAERYVNQYPWYHMPQSL
HRILIHGWQVVDRMALPIGMLSEEAQEARNKDFKKFRESFSRKCSRSKTNEDLLRRLMCSSDPIISNLRTPHHPKKKDFP
DGVLELLKEVPLKDFV
>Transib-2_HM#DNA/CMC-Transib 872-2887  [Hydra magnipapillata]
MQTISRLDFYNSIQQQEAPNFNEKMDLADQNLLSRNQYTEELKTVYKRQMSRLKAIFRKMWSSSSRTHEIFIKKHGPWLQ
GSFQIPGTPSTPSSAGRPRKSFVDSSERSKRRKTEQLRKDVEPEAIVFAAETCLTTSGKRSAATVLKDLKTSPKRAGKYK
KAYRSSLEPTKKSLTPLEALLIFTDAGLTKSQYEIVRTSDKKQWPCYSILVEEKKTCYPDPDSFTVTESLAEVDLQSLLN
HTAERLVLYLEEVIKTLTESGRKHMKLSTKWGCDGSQQTQFNQKFEDDSNSDASIFQCSMVPLQLTCGVNKKVIWQNPTP
SSPRFCRPIRIRFIKETADVIAEEIAYMENKIAGLKPTQLQDIAVEHVMMLTMIDGKVCNAATTTKSTMRCYICGATSRQ
FNDLDRTCVDNQSSYKFGLSILHARIRCFESLLHLSYKLPVKKWQKRLNEDEKRLISDRKKKIQDEFKSKMGILVDIPKV
GFGNTNNGNTSRRFFNDPETSADITGVDFRLISRMKIILEVISSGHKIDVEKFRQYTLDTAKLYVELYPWCPMTPTLHKV
LVHGPDIVENALLPIGQLSEEAAEARNKHFREYRLSYARKFSRKDCNQDIINRLLLTSDPLLSSIGKKKHKLTKPFSKEA
VELLLPGEVQDSDTENNENEEYSDNDEVESN
>CryptonS-1_PTri_yr#DNA/Crypton 438-3263  [Phaeodactylum tricornutum]
MNCQKLKGVTELRKGCSSESSLKAASRHFDLFLEEVILSGTIGGKEKQXLFPIRSVNNSTDSNNIDNSKRLDGDAQTQYS
FKTIAVEKINDKLLNLFAGYLTRAEKLRGNKNETQDNFSDGNGISYNTAERYLSSIKNEILRRCLDLGLKRSFDDAQQTR
IRQSMTRRFVERAVRNKTPLARSHVTAARNDFLVIALLCIWDGSFPMADMLFYLLTLRYLAGRGQEVAMISRSRVSLGEP
SEWADSGDKTFVVRLWRSKVSHEQDLSIVPHQSEMLLDWVFAFAYSAVMNTNPNDSLFPTFAEKVELRNLSAGNINDEEI
GNETTQDSTLKAKVDSSKKVTKYFQALLERLIKTSEELVGPNEMARAAGLYQDDEDFSEEFDGSSCVGTTSVNNEPGIFN
LTGEEETVGLDPPANAAYYYSGLLHKHGISAGLSTHSAKRSAVEMANESALLLTTWVCFRAGWLMKAVHTIFDYLSFNPK
NDRQVSRVFSEWNTPSFRGEILGGRPPRLHPIRLQGFKEAEKVRCFVAALFVNYEDKGIDSNIFCTIDDRKNRLRELRNL
YDLLTATILRYLPKFVKVLQEHPNPSHPFRQGQRTCIEKHPFLLRILKASQTAGILWDELKAWSTLVQKDFLERNFESAS
WSEMLEVVGEEQFSADPRTLGGYMETTNRTMNTIQLGQSRMLETTSIHDARLKELTTTVSIQGQAIEECRQALAEIKTLL
KEALGKPDILIPAINQGREQLPINPSAAERMLXIDQQVLPVYSLPEKLKDMDLTDLFQQWHFQQWHLQMYSGGTKQRGIS
SQIRFGMEYFSLFLPAQVPPLPTGAVNPMELLAEPWRRQIRFLANKAFEAMADFFETKGLKVPKSLTPFKKAMFLIDASE
WPKGPQDPSPFPILSKKGKKEELRNYDCLQKSQEKEKLKVQNRLQKRGSATKQTLPVVVDTT
>Ginger2-1_BF#DNA/Ginger 819-3794 via genewise with Ginger2-1_MG, 2 introns (1118:2125, 2785:3087) (second intron is open and in-frame; it could alternatively be at 3078:3390 or be absent) [Branchiostoma floridae]
MAENPPEEQKAEFYRLLEAHISSLGEKKKDNYCISQERYNKALQALQLTKWSKCPEGGKFKFWATKNFDLQEIGSKKILY
CKKSSRPVVPKEDIFDTIKCCHTRVGHSRRDKTWDEIKNNYAWIRYDLIQLYLRTCRECSTRAPLKKPAAGRPIISLGFM
TRMQIDLIDMTSRPDDDNKWILHMRDHFSKFSWTHPLTSKRASGVAEKLVQTFCLFGSPHILQSDNGKEFVAGVINELTE
KWPGLVIIHGRPRHPQSQGCIERANGDLQLKLGKWMEEHPEKGWVEGLQHVTYAMNTSVCATTGKSPYAVVFGQSPRTHX
VLERETVHGQTVDPDHQAVFQLTNIADPTHIPACFNPFEEPLTEGQFVIWEIEKTTPVDESDVPHAKIRKIATENYLKAA
NRQQKNYDATVKHLIKSYSPGDTVGVRISEVDRTNTDPRLLPCKVLEANKQGQDTTYRVYSAEGKLKQAFSSEDLVDMRN
VCFPRLQSIDVQDLEEVTLIHAARKHSGWQASAANGHSVCACKGSCISNKCRCKKAGIPCATKCHPATLNVCQNR
>Ginger1-3_HM#DNA/Ginger 181-2251 via genewise with Ginger1-1_HM#DNA/Ginger, 1 introns (346:547) [Hydra magnipapillata]
MYKNINFNDVRKYLNDNAFPEDVNERGKKANFKRQCKNFVIVDNKLMYCKKGIGEVIVVIDQEEQLNIVKEVHEGLGTSE
KAVALASHLGINAVRKQISSRFFWHSIVEDITKYVAQCERCQKTSNRNLKVSPALKPVKVEQQVMKQVGVDLIKLPESNG
FNYVIVLIDYFSKWTEAEPLIDKTAVSVAAFLYRVICRHGCFQIQINDQGREFVNSVSIALHDMTGVQQRVTSAYHPQAN
GLVERQNQTIKKAIVKVLNENVKSWASVLDGILFALRVKVHDSMGYSPFYLMYNRQPYLPIDVKYTNVLNGDNYNPVYDK
EVLQKALQMKRGLEEKAMTNIVCAQKKQKIDYDRKHTTPSNFFVGQKVLLRNLKRENRKGGKMTFSWLGPYEILDILSNS
TCLLRNIKGNNTIKKKYSLHHVKPFVEEKSNSKLHSLTSECNDQDKSQRNSKLMKHPTKEVLQKIAEEQGLKIFIMPDLF
DGEENDVPSKIHVCKGDGNCFFRAISFLLTGSECQHTRVRNVVVKHMVSKPCSSLLSGYLGDDVENYITKSGMATDSIWA
TDVEILGTANLIGIDIAVWSFTGQKLAWLKYPASMKLDQLTAHSILLENKNNHYNVVLSLKAL
>Ginger-1_Chlorella_NC64A#DNA/Ginger 151-3389 via genewise (for intron 1241:1442) and otherwise following gi|307109524|gb|EFN57762.1  [Chlorella variabilis]
MNQPVILYALERRQNGAKNVFLTKSDVEGIIRIKQGDQQAPSGRRRRGVGGGAAVQGGAKNYSKKVLQFFQVLKGAGGQD
ILCRCVKRSGEWRWCPVVPLEELPRVIKEHHERATGSAKVDLIDLGEGRDPKYRYIMSYVDLFTRHVWLRALASKRPHGV
ARQLFKIWMDTQAPARLQSDNGKEFVAGIILELCQAFGVTAINGAIGKPQSQGCVERSNRTVKDKISAQLQMAPTIAWRY
QVRRVQGMINHEPAAALGRKMTRSQALFGEPSQRVLQAPAEFIARLLGIASDEEMDMEQGVDDSPAVPTTRTAARRPTAW
APITGRKRSAVEAELADEAEVAAAAAAMDEGEAPARRSSQRAAAAGLIAVLAMEHELEDAEEVLPVRQLPQRTAATSSPA
GQHRNRIAVLAAAAAAAASEAGEEQAAAEAEEEAAAEAEEEQAATEAEEEEAATEAEEEEAVAEAEEEQAAAEAEEEQAA
TEAEEEEAATEAEEEEAAAEAEEEQAAAEAEEEQAAAEAEEEQAAAEAEEGGTLAAPHPPMPAHLQATRSRVAAAQVKNR
QRIAAQRRPKGEPKDFAVGDDVLLLPPKRGKVGKQLGRNRIVCRVVEIKRPFGVTMYRLRSGAGVVEGMHQASRLSKAPP
SLASELTFSGTAQRGVPVVSLNVAMAAQPSGGKAALQEEWCAVWAALWLYNR
>34897420_Osa#DNA/hAT-Ac gi|34897420|ref|NP_910056.1| hypothetical protein [Oryza sativa]
MAAAALGLPACGGAAPRRIEPAAVAPSGGGSGVGAAPPRIEVAAAAASASRSFFRRRMEAPAGGGYLLGGQPARCSGGHS
TGSNGEGFGGHPATSPPSSSWVSLTREHNEEMRTPNAFFGLGTNSGEDIEMGDGDSDSEQVGPVDEHVNPVIQALTRKFR
SEAWKEFVPILIDNEVGAGKCKHCDTEIRAKRGAGTSSLRKHLTRCKKRISALKIVGNLDSTLMSPNSVRLKNWSFDPEV
SRKELMRMIVLHELPFQFVEYDGFRSFAASLNPYFKIISRTTIRNDCIAAFKEQKLAMKDMFKGANCRFSLTADMWTSNQ
TMGYMCVTCHFIDTDWRVQKRIIKFFGVKTPHTGVQMFNAMLSCIQDWNIADKIFSVTLDYASANDSMAKLLKCNLKAKK
TIPAGGKLLHNRCATHVINLIAKDGLKVIDSIVCNIRESVKYRDNSLSRKEKFEEIIAQEGITCELHPTVDVCTRWNSTY
LMLNAAFPFMRAYASLAVQDKNYKYAPSPDQWERSTIVSGILKVLYDATMVVSGSLYPTSNLYFHEMWKIKLVLDKEHSN
NDTEVASMVQKMKDKFDKYWLKSYKYLCIPVIFDPRFKFNFVEFRLGQAFGENAKERIDKVKKRMNMLFKEYSDKLKDSN
ANPLRQAEHVMAISENDPMADWVQHISEQ
>25406015_Ath#DNA/hAT-Ac gi|25406015|pir||A96722 unknown protein T17F3.2  [Arabidopsis thaliana]
MCRRQKKLMINNEMDLSDAVIVKSGRLKSVVWNDFDRVRKGETYIAICRHCKKRLSGSSASGTSHLRNHLIRCRRRTNGN
NNGVAQYFVKGKKKELANERIKDEEVLSVVNVRYEHEKEEHEDVNVVSMGLDQRRCRFDLARMIILHGYPLSMVEDVGFR
MFIGNLQPLFELVAFERVESDCMEIYAKEKHKIFEALDKLPGKISISVDVWSGSGDSDEFLCLAAHYIDEGWELKKRVLN
FFMVDPSHSGEMLAEVIMTCLMEWDIDRKLFSMASSHAPPFSENVASKIRDRLSQNKFLYCYGQLFDVSCGVNVINEMVQ
DSLEACCDTINIIRESIRYVKSSESIQDRFNQWIVETGAVSERNLCIDDPMRWDSTCTMLENALEQKSAFSLMNEHDPDS
VLCPSDLEWERLGTIVEFLKVFVEVINAFTKSSCLPANMYFPEVCDIHLRLIEWSKNPDDFISSLVVNMRKKFDDFWDKN
YLVLAIATILDPRFKMKLVEYYYPLFYGTSASELIEDISECIKLLYDEHSVGSLLASSNQALDWQNHHHRSNGVAHGKEP
DDRLTEFDRYINETTTTPGQDSKSDLEKYLEEPLFPRNSDFDILNWWKVHTPKYPILSMMARNVLAVPMLNVSSEEDAFE
TCQRRRVSETWRSLRPSTVQALMCAQDWIQSELESS
>Ginger1-1_HM#DNA/Ginger 310-2592 via genewise, 1 intron (469:795) [Hydra magnipapillata]
MHTEFADVYNFLKRCIYPKTAISKGDKSNFRRKTKPFVIEDNELYHLGKSGVKRKVIWCKEEQHHIIKSVHDGNDISNEA
NALSGHIGINSTTEHIKKRFFWFGMIKDITAYVSECDNCQKAKNKKLQVKPLLQSISIPKGNMKQVGIDLTQLPEVNGYK
YLIVLVDYFSKWVEAEPLFDKTAKSVAIFLYKQICRHGCFEIQINDQGREFVNELSNELHRKTGTRQRMTSAYHPQANGL
VERQNQSIKRTLVKVLEDAALEWPFIIDGVLFSMRIRKHKSTGFSPFELLYQREPVLPIDIDQNLIDYNDNATLIEDDSQ
NKKAILETFNKMNEMKKCIFDEAYENIQKSQVRQKRDYDKRVNPKNSIAIGTKVLLRNHKRDDRKGGKLVKPWIGPYTVT
NISSTNNCSLKNEKNVILKKKYNLTSLSLYKEKTLSNGSIQIEEVNKLSNDNDIKIEPVIKDVESSKSYINTQHESCVNV
LDKEIAKCATFEMRKLIAEKFEIVWKHNVAVGNINLTLCPQGLHRIKGDGNCFFRAVSFIITGSEDEHKQIRDKVVNHMC
NQIHDEMTGYLSMPIQTHICKTRMLEDATWATDAEIIGCASFMEVDIQVYSKYGEKTKWMIYPCSLRLNKLSDYSIFLDN
STGFHFDVVINS
>CryptonS-8_PI#DNA/Crypton 2432-2944 84.8% sim to CryptonS-4_PR_p2, SW:591, [Phytophthora infestans]
MPTKKPTKNGISSAKEFKTLCIAVAKSCKIRVSDEAIRHLRLTMNITVASTSLLPEAIQVVFTSLAERKIQRAKLVDIRE
WLAPPAVDNDEVDGDEDSESEKIHYVRKILNWKRVKGKTYYLVEWESTWEPREHLSQNIVAAFEKERRLLVRKKFFEDEA
VEDNTLNITEG
>CryptonS-3_PR_yr#DNA/Crypton 193-2328  [Phytophthora ramorum]
MLXANTNHQFTSYLSNIRAPADRTLZLSMSLQDLAPVNSQRALQTAINAFGRFLAAEGVSMGFIAASLIGDASGAVFVKL
MDRFGVHLAFVEGRVGKPLAKNSVMSYFRHVKNWLLDTYPTHRATIEKKLLKMGQTLERHCLKRAEGGMVKKAPACTKED
LRILMDGIYYDAASSKDYQDAALLTLMWYAFGRASDLGFVVKGNLSVSADGIVFVRFIRVKTAEEQGISLFPDKDNFITC
PLHAIAMALVMQDAPCAQLLDHPHLAASSYENMTNPVEIPLAEALVACENFDEPSEPPKKKQKQPEDNMKIHAYVNRVVK
TASAVQAKAKPTANLTSHSFRRGGAQHANSDPLLSAQWIFDRGSWNMTATNKAFAYVFNTTSEDQKVARVLSGWDSSKKP
PVPMLSWFDSASHQQALELGNLLFQTSVATQDPEKKLNARVAEVLTASAIQHFPEVLERYPMCPYASRMRECLMTLGISK
AQILAWSSELQGKVTQKDLEEAQGDGEAFTREEKLINHQNCIIGELIAMNQALTERVGQLERQGDVGQGQAAISSSGSAV
TQQGACTDTPPAPRSCGSKALPKGPAAIWFEWYAKTPRMWDACSDRQKKSAYKQTVNFMKLFLPNGFELDXXAPDYCDQV
IRTGAEAEAGLYKFFKENGVKSKHGSSVLKQLRKLYRESKLDPLVDAYRARVALNSITDPAPGETQELFTRK
>CryptonS-10_PI_yr#DNA/Crypton 276-2309  [Phytophthora infestans]
MSLNDLAPANTKRARESAARSFLAFLKXEDVTWEYLEASMSRDTAALVLEGVVDKFGXYLAFKEGRKGQLLARHSVMQYY
RQAKNWLLDQFPQHRVAVEKNLLKKGQVLERYCMKRETGTFVNKAPACTKKALKQMTEYLYSTATCASDYQDAALLCLLW
YLFGRASDLTLLRKTNLTIGSGDIFFVRLIRVKTSEEQGXSLFPDSDFTTCPLLAVALALITHSSPTAALLNQLPEQQGX
SXPSQTPAAPLIDLIDHPQDAPKSGGQPKTVDASPGIHSYVNRALERVMGKAGVSDSLTSHSFRRGGAQHANGSGMCVQW
IFDRGAWNMTSTNKAFAYVFNTPAEDHKVARVLSGHDPAKPVPLLTLDFFDSETQAKIRAVASVLFGASTGLDVKAXNIN
ARVADTLMAYVLRHYPSLKGVKSDAXAVQRIEXCAVAKGASVNELLAWSSHLSSNTSPDGKPSMLTPPIPSEDITKHPVF
RQQSALIEQLIQVNQKLDARLSTMESKIYNKRERAEXAESGDNTSEGAVSNTQTVKRRRTSAATSFKDAWYSWXAQEPRM
WRSTDAATKHTRSTFKMIVAFMKLFLPEGFKLSEKSPTYRDEVLALGTQAEGKLXAFLQDRKITARGAQNVLKSMRRLHX
SGILNDHIRSYHQLHAAGRITDPAPLHTNKVIALDCIQ
>CryptonS-20_PI_yr#DNA/Crypton 191-2308  [Phytophthora infestans]
MLRVNTSHKLGAHHSCICFFADKTLQFIMSLEDLAPLNSQRARQTAINTFGRFIAAEGVSMDFVAASLVADASGAVFLKL
LDRFGVHLAFLEGRGGKPLARNSVMSYYRHVKNWLLDTYPKHRATIEKKLLKMGQTLERHCLKRVDGGGVKKAPACTKED
LRILMDGLYYDATSSKDYQDAALLALMWYAFGRASDLGFVFKGNLSVSADGVVFVRLIRVKTAEEQGISLFPDRESFITC
PLHAIAMALVMQDAPCAQLLEHPHLAATYDESLNPPTDIPLAEALDVCGELDSSTEPPQKKRKLPEENMKIHAYVNRVVK
SASAAQAKAKPTANLTSHSLRRGGAQHANRDPLLSAQWIFDXGSWNMTATNKAFAYVFNTTSEDQKVARVLSGWDSSKKP
PAPTLSWFDSASRQRALELSHLLFQSSIHTQDPDKXLNGRVAEVLTASLIQYFPEVLERYPMCLYAARMRQCLMTLGLTK
TQVMAWSSELQSKVSRKELEESSGDGEKLTSENKLINHQNRIIGELVAMNRALSERVTALETQAGRSQQDREPTTGQSSP
EVDLTNSKGCGSKALPKNPSAIWFEWYAKTPRLWNVCSDRQKKSAYKLTVNYMKLFLPNGFVLDESSPDYCDQVQRVGLE
AEEGLYKFFEECGTKRKNGSSVLKQLRKFYREGKLDAHVNAFRARIAIGGIIDPAPAETHELFNRK
>CryptonS-11_PI_yr#DNA/Crypton 227-2326  [Phytophthora infestans]
MCIVILAKGLPRITCIFLPLRPRTMSLNDLKPANTKRARATALKAFERFLSLENTTMEHVVALIVADSSRASSILVTLMD
KFGVYLAFHAGAKGQPLSRHSVAQYFRQVKCWLLDEYPVQGGAVARQLLSMGRTLEQHCIKRESGGFVKKAIACTKEDLK
KMIRYLYSTARCASDYQDAALLCLLWYLFGRASDITFVRKQQLSVGAGGVFFIRFIRVKTSDEQSLSLFPDADFMTCPLL
ALALALITQESPCAALLNHLPVKSKDVPVDLAASIPLLELLDDNSALNSSQTSPGSTTVHATPTVGIHALVNRVLDRVAG
PAGVEVSLTSHSFRRGGAQHANANSELAAQWIFDRGAWNLTTTNKAFAYVFNTPKEDHQVAKVLSGMTPKQASSLPSLES
FDAATLEKVREVSRKLFNSSHDLGNKAFNVCAVVRDVLTATLLLHYPSLVKINAKTPAMKTIHLCAEASGVTTTNLLAWS
QRLTASNEHANTTAEAMTEENVKANAALNYQTALIERLIEVNRSLEARVNSLEAAMNNTEGETLARDNQAKRVRDEDEIV
PVKRRRRSKTIPLVDTWFAWYTAVPRGWQSTNKHKKSDSKQLVAFMRLFIEDGYALDELSSSYKDTVRQLGELASNKVTV
FLGEQGVPSKGSNAVLKVLRQMHREGKLNSLISAYHQRFTIGRVVDPTPTQHQSMLKLLP
>ATEnSpm2#DNA/CMC-EnSpm genewise with BREnSpm1 and ATEnSpm9. EnSpm-1_EPa_tp over 85% similar and broken. [Arabidopsis]
LGGEHEIYTLRSWMYNHRNQATGEVTIEYYDELRGFMYQTTNEPFARENGTILCPCRKCLNEKYLEFNVVKKHLYNRGFM
PNYYVWLRHGDVXRDSARTSNTNYGVEQSSNFDNDANYGQQVPDQFGYGYNQENRFHDMVTNAFHETIASFPENISEEPN
VDAQHFYDMLDAANQPIYEGCREGNSKLSLASRMMTIKADNNLSEKCMDSWAELIKEYLPPDNISAESYYEIQKLVSSHG
LPSEMIDVCIDYCMIFWGDDVNLQECRFCGKPRYQTTGGRTRVPYKRMWYLPITDRLKRLYQSERTAAKMRWHAQHTTAD
GEITHPSDAKAWKHFQTVYPDFANECRNVYLGLCTDGFSPFGLCGRQYSLWPVILTPYKLPPDMCMQSEFMFLSILVPGP
KHPKRALDVFLQPLIHELKKLWYEGVHTFDYSSKQNFNMRAMLMWTISDFPAYRMLSGWTMHGRLXCPYCMGRTNAFQLK
KDRKPCWFNCHRRFLPLHHPYRRNKKLFRKNKIVRLLPPSYVSGTDLFEQIDYYGAQETCKRGGNWHTTANMPDEYGSTH
NWYKQSIFWQLPYWKDLLLRHNLYVMHIEKNFFDNIMNTLLNLQGKTKDTLKSRLDLAEICSKPELHVTRDGKLPVSKFR
LSNEAKKALFEWVVAEVKFPDGYVSKFSRCVEQGQKFSELLPTNIHEAIAGIGVFFKDLCTRTLTTDTIEQLDKNIPVLL
CNLEKLFSPAFFDVMEHLPIHLPHEVALGGPVQFRWMYPFERFMKSLKGKAKNLARVEGSIVAGSLTEETSHFTSYYFSP
SVRTKKTRPRCYDDGGVAPTYNVPDVPDTFAQIGRLAGKLKEVWWDDHTLSRAAHNYILRNVDYIQKFERLFDSQICEAC
PELEEKEYETYKDRDFARXXTNGCGNEPLPLWLHELVQEPRSKITTAPMYFTRGYTFQTYPYGSRRTTANYGIHVEGETE
FYGIVXQILEVEYPGLLNLKCVLFKCDWFDLVIDRGVRKNNLGVVDVNANKTYAKFEPFIL
>Chapaev3-5_HM#DNA/CMC-Chapaev-3 473-2155  [Hydra magnipapillata]
MSSNRRSCVNHPDVFCYICGEYMLKENRKKVSDFLKRAYLAYFGVRLGDQDKTWAPHQVCKTCTEHLRQWTTGKRKSMKF
GVPMVWREPRNHFNDCYFCILNITGINRNNRSKWTYPDLLSARRPVLHSEEVPIPTFLQLPELCEDEYCASNSFDTNEID
SDYEGKASIPQQFNQDELNDLTRDLNLSKEASELLASRLKDKNLLEQGTKITFYRTREKDLLPFFSQEEDLVFCHEIRGL
LEKMSLPKYFQDDWRLFIDSSKRSLKCVLLHNGNKFGSIPIAHSTKMKEEYNTIALILEKLKYQQHQWVICVDLKMVNFL
LGQQAGYTKYPCFLCLWDSRDKTHHWTKKEWPKRKNMEVGKNNLINNALVERDKIIFPPLHIKLGLMKQFVKALDKNGSC
FGYIGEKMPQLSTEKIKAGVFDGPQIRQFINDSAFVNSMNETERKAWTSFVAVVRNFLGKRKDENYVKLVDDMLSSFKSL
GCNMSIKVHYLHSHLDRFPKNLGDMSEEQGERFHQDIKTMEDRYQGRWDTHMMADYCWNLKRDCSKIHSRMSRKRSFWVV
>BREnSpm1#DNA/CMC-EnSpm 1-2112 (fragment) [Brassica rapa]
MAGSGTIYELRNWMYMHRDANGRVTKEYLAGLETFMHQADSTPLAQESGKMFCPCRKCNNSKLANRENVWKHLINRGFTP
NYYIWFQHGEGYNYDQNEASSSNSNFQEEPVNHHLHNEHSYHQEEMVDYDRVHDMVADAFVAHDEDEEPNIDAKKFYGML
NAANQPLYSGCREGLSKLSLAARMMNIKTDHNLPESCMNEWADLFKEYLPEDNVSADSYYEIQKLVYSLGLPSEMIDVCI
DNCMIYWGDDEKLEACRFCKKPRFKPQGRGLNRVPYQRMWYLPITDRLKRLYQSEQTAANMRWHAEHTQTDGEMTHPSDA
RAWKHFNKVHPDFASNSRNVYLGLCTDGFNPFGMSGRQYSLWPVFLTPYNLPPEMCMQRELLFLTILIPGPNHPKRSLDV
FLQPLIKELKDLWSTGVRTYDCSTKTNFTMRAMLLWTISDFPAYGMLSGWTTHGRLACPYCNGTTDAFQLKNGRKTSWFD
CHRRFLPIGHPYRRNKNLFRHKRVVRDTSPPYLTGEQIEAQIDYYGANETVRWGGNWHVPRNMPDSYGVHHNWHKKSIFW
ELPCWKDLLLRHNLDVMHIEKNFFENIMNTILNVPGKTKDNIKSRLDLPDICSRSELHIKSNGQVPVPIFRLSSEKKSVL
FNWVASEVKFPDGYVSNLSRCVEKGQKFSGMKSHDCHVFMQRLLPFAFAELLPTNVHEALAGS
>EnSpm2_HV#DNA/CMC-EnSpm 558-3927 via tfasty with EnSpm-3_HV_p1, 1 frameshift. [Hordeum vulgare]
MMVNYIFYIIIMQMNRQWMYGNRLSREFTTGLKDFLVVANANKQKGFVICPCVDCXNQKGYSSSREVHLHLLRHGFMPSY
NCWTKHGERGVIMEEDEEGDDFMDESYLAHFGDTFMEDAEGEGEGEGEEEARDETVDDLGRTIADARRRCETEKERENLD
RMLEDHRKSLYPGCDDGLKKLGCTLDLLKWKAQAGVADSAFENLLKMLKNMFPKNNELPASTYEAKKVVCPLGLEVLKIH
ACINDCILYRGEYENLNECPVCTALRYKIRGDDPGDDVEGEKPRKRVSAKVMWYAPIIPRLKRLFRNKEHAKLLRWHKED
RKSDGELRHTADGTQWRKIDREFKDFGTDARNIRFGLSTDGMNPFGEQSSSHSTWPVTLCIYNIKHWLCMKRKFIMMPVL
IQGPKQPGNDIDVYLRPLVDELLQLWGRPGVRVWDEHKEEEFDLRALLFVTINDWPALSNLSGLSNKGYNACTHCLHETD
SVHLPNCKKNVYLGHRRFLPKIHPVRKKGKHYNGKADHRPKPAERTGAEVFDMVKDLKVIFGKGPGGQSVPKGADGHAAM
WKKKSIFWELEYWKVLEVRSAIDVMHVTKNICVNLLSFLGVYGKTNDTKEARQDQQRLKDPDDRHPEWFQGRASYALTKE
EKVIFFECLSSMKVPSGFSSNIKGIINMAEKKFQNLKSHDCHVIMTQLLSIALRGLLPQNVRVAIVKLCAFLNAISQKVI
NPEVLPRLQNDVIQCLVSFELVFPPSFFNIMTHLLVHLVEEIFVLGPVFLHNMFPFERFMGVLKKYVRNRARPEGSIAKG
YGNEEVIEFCVDFVPDLKPISLPRSRHEGRLSGKGTIGRKSTICMDGHSLTEAHHTILTNSSLVAPYFEKHKNILRSDNP
GKLESWIRKVHMETFGSWLRKHLMNDNDVVDQLYMLAKTPSSTITTFQGYEINGNTFYTIAQDKKSTNQNSGVRFDAATE
NGQEVTYYGYIEEIWELDYGPSFKVPLFRCKWFKLTGGGVKVDQQYGMTMVDFNNLGYLDEPFVLAKDVAQVFYVKDMSS
KPRKRKDKKTISTSCDDPKRHIVLSGKRNIVGVEDKTDMSEDYNMFAEIPPFKVNTDPSIKLNDEDAPWIRHNRKQAGTQ
GKK
>DOPPIA4_ZM#DNA/CMC-EnSpm 1515-4079 [Zea mays]
MFFVFCLAFEMDGDRRVMYDGWRKDGAHSNEWMGVTKAFLEHAFKDATGRLVKCPCNHCENKWPQKKEEMEKHLCKSGFM
PNYLVWYRHGESIRHVDAEVELDDDHDRMDDMLHDLGREVEMNAEEPGQLPRDAQEFFQLLAAGEERLHEHTQMSVLGTL
TRLMAIKSKHNISNSAYNDIVQLMGEVLPENHKLPKNMYFTKKMLAGLGMTYEKIDVCPNSCMLFFEEDDKLDRCKHCEA
SRYVEVTNDEGELVVTKVAAKQLRRLPIIPRLSRLFLNKEIALHMTWPKNGVRLVTDPDIMVHPSDGDAWKAFDEFDPEF
ANDPRSVRLGLSTDGFTPFNTSASPYSCWPVFIVPYNLPPELVNKEEFMFLALVIPGPEHPGPKLNMFVRPLIEELKQLW
RGVKAYDSHTEKEFTMRAAYLWSVHDLLAYGDWSGWCVHGRLCCPICMNDTDAFRLKHGGKVSFFDAHRRWTPFKHDFRN
SLTAFRGGAKIRNGPPKRQTAPQIMAWHACLKQGENDRFQGYGEDHNWTHISSIWELPYAKALIMPHNIDLMHQERNVAE
SIISTCFDVTDKTKDNMKARKDMAEICKRPMLELKVSDKGHESRPRADYCLKPDERKEIFKWLKNLKFPDRYAANLKRSV
NLKTGKLIGLKSHDYHIIMERLMPVMFRGYFKDELWSIFAELSYFYREVCAKTVSKRLMQKFEKEIPILICKFEKVFPPG
FFNVMQHLIVHLPWEALVGGPVQFRWMYPIERALKKLRASVRNKARVEGCIAEAFALKEISQFSTRYFARANNVFAPSVR
LHVENESPQSTLQIFANPGKAVGKGSVCHIEASDLNTLMLYMYSNIDSTQEAFE
>Chapaev3-2_HM#DNA/CMC-Chapaev-3 365-2044  [Hydra magnipapillata]
MASRGCINSPDLFCYVCGYLTDKGHRKTFTPFLRKAYELYFDSKVDSGKSWAPQFICLTCACNLRGWIRNAKNNNHLAFG
VPMIWRESSNHITDCYFCLTNVTGFSYKTRSSVKYPDIPSVSKPIPHDPVSCPIPTSLTEYRVDDATQEESSSSSNMADS
DYNPDDDEIHLINNDDLCDLVRDLALTKGQAELLGSRLKEFNLLSPGTRTSQFRHRHKELVQFFAMSDNMCYCTDIQGLM
SSLGVEHKTEAWRLFIDSSKASLKAVLLHNGNMYASVPVGYSTHLKETYETMSLLLEKICYRDYNWNMCGDLKVITILMG
MQTGYTKYCCFICEWDSRDRKHHYINKNWPIRDKMEPGSKNVLHVPLVEREKVLMPPLHIKLGLMKNFVKALDKNSDAFR
YLCNKFPELSYAKVKEGVFIGPQIRKIIADSHFEDLLSRTEKKAWLAFKSVVANFLGNNKSPDYVNIVQKCISAYKLMGC
NMSLKIHLLDSHLDFFPENLGSVSDEHGERFHQDISVMESRYQGRWSAAMLADYCWMLQRNMPNCQHKRKSTAKKFKPN
>Chapaev-1_AA#DNA/CMC-Chapaev 624-2345 [Aedes aegypti]
MRRKKSKSIKLASAVRKLKSTPWFVGKMKPKNHEQNQQTVCVLCLSKNKLQKLSEAAISRIRSFILPDIVAKAWYYPKKI
CTHFSFVLYECNSTENLQSKINLHVYKYDQRVSTRSGALCQCEICIAARVTLPNLIDPQKKSRKRGRPAVLEESKRARFT
Klctkcfsemsrgkqhictivqrqnnvlqivqgdrpqagdaiitaylrhkqpdedgtislannrgrptrcalnaptpssq
kglsvddlclikkncnlstrntiklssylrgmdiqipsklrksltqenqklknfysvahfqfettkasqendlealpkpv
iycndvkgfinyvekernicqkdvfykigadggggsfkitlsivdkerttkkgekdtgekklfllavapgmselycnisk
vwttllqldnleavvagdlkiinlllgimghsssypcpycitkkpvlsqvckdsrtlgqilenytqwmdqgadgkrakyh
yncvqkpllcgspetttvtlcppptlhitlgilnaifkavevadpvtaarwvtvsacqrhskfgftgrnchkllakrsvl
ssdgplgkfrsvr
>Academ-1_GA_tp#DNA/Academ 539-4234 via tfasty with Academ-1_SP_tp, 5 frameshifts and 7 stopcodons. [Gasterosteus aculeatus]
ELVFTETLSTRTLVDMLPYPSGAETTQSKLSQTDSETEKGTTEHQTTQEDARxLYTAALFLKRHLSDTSGMLCPWPPTSE
NLNVTEAQTVVPLALYNLVNWIIGASEEPTLDHFVDIADDLHLKVLSVCQDIVYLASKGRKQTPSTMLKRLxDIxKSAIx
NQLLLLLPRKSLTLGLTVRHLTGSSRIVSLLNKMGHCASWGTVLSLDTSLAQLTLEEGGDKIPKGFSKRAPTTLVWDNID
FGEETLSGRGTTHHTNGIMLQSLHHRAYVHSNQTATKEGSFLIQSPPPPKMPIEPYHQSKRQGPQNLAKCRQQHAEWTPT
LLHKLNWHMSLxSPQIRIDVQLDSWTGFHTLLQGENTLQKSALYYLPVIEALPTEMSTVNTILKRSVQMADQLELDHIVL
VFDQAIYAKAQQIRWKNDDFTQRLLIRLGEFHTCMSYLSILGKRFGDAGLQDILIESEVVAPGSINGVINGHHHNRSMRA
HKLEMMNESLQRIRFISFLDSLPPQERAVCMDVITDMKCVFPDGLMDVLSADERFDGMSSKYANFVQRKSTENATFAFxS
SYIDMMQLLLLFVRATRESNWQLHLSIVRLMMPCFFAYDRVNYARYLPVYWLEMVNLPITHPSCNSEMNVKGQWTVQRQS
VDRFASIACDQAIEQTLKQRCQDKRWLTGITQNRSAVYRWILSQHERATTARQCESMAGISPELRTRKDLDNTRIDADEN
AVSRIISTIDSMLNPFDVYQDVIVCLSSRRLSTAEIMNDLLVALEKGENAVKEFMDQRLLSNSVDIFAPIILQKLKTFND
QVKSKKNLRAGKEVILRADKNLFSRLLILGQSRKIxMREILSYSLGTVSYPLASADGLLAKTNKSALMDLLEKKGGDCLV
DQVPVDGAILFDGMAVMQAMRSRPDTFGELAETILQNILQLALQHKCTRIDFVTDQYPLISIKNIERSRRADAGSQRMQI
FGPNEKEWKKFLSEATNKEALAEFLYVSWKNADLTAVGKNLCLYIAHTNQCHCVTVKEGVQSVRVVEDGIHTFSGCDSTI
AFYGKGKRNTFSVACEKGEYLKAFKSLGTNFNLEQSTFALLCQYVCHLYDQPAADNVNEARYKAFCMASSALPELCIPPT
TDALHQHCKRANYHAAIMRSCLKQNISAPSPAGYGWKIEDGTLHITWMTRNLAPDSVLHVIHCGCKGACETGRCSCFSAG
LCCTDLCRCCSCANTKETEELEDNCPDTDSED
>Chapaev-1_HM#DNA/CMC-Chapaev 377-2436 (One Genscan-predicted intron)  [Hydra magnipapillata]
MPNKAKTHEENRKCVCFLCLKKANREITSFLVEKIRTVLKIELDFSNFQIPCGICERCRVAIRRREEGEDAPIPRLFDFS
TISVQRAATNIPCNCLICQTARTNMNQRHPLEPPKPKENSSIEKRCSDCFSVIGRGLPHNCTTGTLRQNLVEVASRDRIA
AERVASLTIANKTPSPHGTVRLSQPLGGNRFPVVPGPSSARELFPAVPKLTAQDMVGVQIGTRLSNRGMSKLASSLNQAT
PLRIVEKNFREKFDSFGKSLSEHFETKAIRDSTKNDDQHPSRLLVFCPDVGSLANHVIKVRNVSGDPLMKIGIDGGGGFL
KVSLGIIARNTDSNSPPPKRGLKDTGVKRQLLVAISEDLPESYDNLKSIISSLQLHKLSYIISCDMKVANLVCGLQSHAS
AHPCSWCDAESKDLSRSGSLRTLGSIRENFLQFQSSGANARRAKDFKNVIHEPIMTLPDDTLILDIIPPMELHLLLGVVN
HLYKSLCQIWPAAKEWPAALHIQEQSFHGGQFAGNDCRKLLKNTDRLQSLAEQSSFFLAVPFVETLRHFDSVVNACFGNH
LSPDFEQKILQFQESYLKLPNTSVTPKAHAVFFHLKDFILRHNSSLGIFSEQATESLHHDFSSHWQRYKRARNHPEYESK
LLNCVIDFNSKHSF
>Chapaev-21_HM#DNA/CMC-Chapaev 430-2446 via genewise with Chapaev-1_HM#DNA/Chapaev, 1 intron (1015:1081) and 2 frameshifts [Hydra magnipapillata]
MPNKAKDHEENRKAVCFLCLQKGNRELTTFLIEKAQXVLKVELDFSDNRIPSGICERCRVAIRRKDEGENPPLPSLYDFK
SISVRPATRESPCDCLICQIARNKLNIPHPLSASKPKNEGSIEKRCSDCFSVIGRGLPHNCTKGTMRQNLVAVASKDAVA
AEMVATMVISNKPPSPHGTVRLSQAKGGNSFPVVPGPSRARELFPEEKKLTAIDMLKVQNETGLSNRGMKKLASSLNQAT
PHQIVEKNLXDKFESLGRTLAEQFTSNHIQDSTKKDSTRVVVHCKDVSDIVNHVSKVRNIPGEPLIKVGIDGGGGFLKVS
LGVIEANREDSSPPSKRVAKDTGVKRQLLIAVSENLPESYENLKSVLNLLQLQKISFVVSCDVKVANLITGLQSHASAHP
CTWCDADSKNLHICGKPRTFGSIQADFDAFQRSGSILRRAKEFNNVVHKPIICLDNQTLLLDFIPPMELHLLLGVVNHLY
KNLCQTWPDANQWPAALHIREQPFHGGQFAGNDCQKLLKHTDVLQNLAEQSSSFNVMPFVETFRCFERVVNSCFGNNLSP
NFADKIKEFQSSFLKLPNTSITPKVHAVFFHVKHFIDRHKSSLGVFSEQATESLHHNFNVHWQRYKRDPSHPEYEKKLLN
CVVDLNSKHSF
>Chapaev-7_HM#DNA/CMC-Chapaev 462-4432 (8 introns predicted by genewise using Chapaev-3B_HM)  [Hydra magnipapillata]
MDHLTKLSLICRICGEHITKDSVDVCKYSERIGNTFYINTTIDNKNIHPQKMCRRCYIIMRNIEKGSSTSLKVVKWPSPC
PDKCSCFSKVSGRKVKKCKAGRPCIIEQNQKRWTRPIINNLIASIPKQTLRLNAIDIDPVANPHLDLCICQLCNNIMYKP
LILKECQHSFCSECLFREIEGKLETEAKCFICNQHIPLYTILNSVNVTLLIEHILLGCNKKCKLKFAVKDNDLKKLHEEI
CIGEQLLPTMICKKIHDGLDTTLADVFLLKENDAIPRIVEDAALHVIKQKLVTSESNLFAFPSGGPRCELIKNIYIFKIL
FRWLKTKDIECASNKKQRKVAKSWSGEDWVVCNAPFNFLLKDSSDSFEVKNAPWGYIKDLPLHIINKLNLLKSKNLLKHS
NIKNDEIHIKIGGDYGGGSFKMCYQIVNVDKPNSRRNTNIFSIFEAKEYKPNLIVGLSMFTQQINQLQSLCWNEKKIRVF
IFGDYEFLCSAYGITGANGRHACLFCHITRAGMKKSDTQQKHSPCSNRTLETLDTDLQKFIQKGRIPKLAKYCNNVIDSP
LFNIPLTQVGIPLLHISLGIYLKFFNMLEDGCHLIDIKIAAKMCLKNQTVNNKSFDEYIVIQLRIYEQEKAIAEYCEKIT
LIHEAMSIQVLRSPENKEYLYEIFQPRVVHFMKKKNAKIIELEELKTKTFEKSHGPLVKKLDEVLCGLNVQRQAYHGKCF
IGNHVHKMLKLNSVLDLCNSIPKTVSDLGFIDTDVFIEAKVLSEKFVELFSKYATCYNFMNSSEIINNNPLLDYFRKTWP
NESITPKMHLLESHCADFIRNWGLGLDIYGEQGLESMHAEFNSMNSTFCHMKGKQRLESILSNHYIKNSLEALEIRPTIQ
ERKSYKRKAS
>EnSpm2_MT#DNA/CMC-EnSpm 2872-6063  [Medicago truncatula]
MDRSWMKANRLSEKYEKGVEEFLQYCENLPNNNGKFHCPCVKCGNRLPLLSVEELRNHLICEGVCETYTNWIWHGESSNI
PDVLERDDMDVEMDNQMEDMICDIGQEDFQRAHAHNNLRANNELILYPGCKNFTQLSAVLRLFNLKAKNGWTDKSFTELL
ELLCEMLPKGNTLPKCNYDAKKILCPMGMEYKKIHACPNDCILYRNEFEDEKQCPTCGLSRYKVKDGDDDESLKRPPAKV
LSYLPIIPRFKRLFANENDARNLRWHACDREDDGKIRHPADSLQWKKIDELYSDFGKEARNLRLGLATDGMNPYGNLSSN
HSSWPVLLVIYNLSPSICMKRKYMMLSMMISGPKQPGNDIDVYLSPLIEDLRMLWEEGVDVFDGYSRQNFKMRAMLFCTI
NDFPAYGNLCGYSVKGHKGCPICEEETCFKQLKHGKKTVYLGHRKFLKPNHPYRKLRKAFNGEQEFETAPQALTGEQVYQ
RVKDINVKFGKKEKKKKQKTTEKKIWKKRSVFFDLPYWSSLDVRHCIDVMHVEKNVCDSVIGTLLNIHGKTKDNVNARLD
MVEMGIRQELAPHSADNKKTYLPPACHTLSKQEKTSFCECLHTLKVPRGYSSNFNSLVSMEDLKLIGTKSHDCHVLMQQL
LPVAIRGILPKKVRAILTRLCIFFNVICSKVIDLRKLEELENEAAIILCHLEMYFPPSFFDIMVHLIVHLVREIRLCGPV
YLRWMYPVERYMKILKGYVKNQHHPEASIVERYIAEEAVEFCNTNYMPEEEAIGIPKPQYDGRCGGIQGLKLKSLDSVEV
LQAHLYILNNIDEVQPYISTHKRIVKEKNSRMNEKWVLKEHNKTFLKWFKETISNDNTCSENLKCLARKPQSDAISWTIY
NVNNFTFYTRTKDDKSTVQNSGVMVVAESMHFSSSKDKNPIMASIPYYGIIEEMWDIDFVTLKVPIFKCKWIDINNGVKI
DEFGYTLVDLGKIAYTNEPFIMASQAKQVFYVSDPSNKKWSVVLQGKISHEPNNDNLHSTLYTYETPFTQRQSTSMEETL
VDDVYATRDDHREGIWENIQSNQS
>EnSpm-16_OS_p1#DNA/CMC-EnSpm 2117-4687 (may have more exons) [Oryza sativa]
MMDRDWMSEPRSSAAYKDGVEYFLSLAFRDVPEDAEVLCPCVNCRNRITQNFDRVKTHLRCAGILQSYTKWIHHGEKYDP
PPLVFAHVSGNSMNIPISSVRKSCVVEGGEGRSDDMEGLLNAAFGKEDSYESLSSASINDDDIHFDSNSVEPGMDEDENN
TFGDDHIGGEQDMFTSLLKDAKTKLYHGCDKFSRLSFLVNLYHLKCIHGWTQESFTALLGLLSDALPQEADLPRNCYEAK
KIIRGLGLDYQKIHACPKDCMLFRGDRANQESCHVCGSSRWITDKNGHPINSEGKKKPAKVLRYFLLIPRIQRLFSTDQT
SGEMRWHEEGRTKDGLLRHPADGEAWKDFSARFPSFSADARNVRLGLASDGFNPFRNMSSKHSTWPVMLIPYNLPPWICM
KQTSLILSMIIPGPDSPGNDIDIYLEPLVDELLQLWEGVETYDASARKKFSLRAALLWTLNDFPALAYLYGWSTGGKYAC
PSCATLTKSFRLKKGGKFCYMGHRRWLPRDHKYRELNSQFDGTEEKEIAPKTLNGTSVLRMLEGRVFVFGKMAKKKVSVA
KMAKKKKQAKNKSNEKGSNRELKRKRKTCKEKSSDNASKSGKKPEDWLKKRSIFFKLEYWELNKLRHNLDVMHIEKNVCD
NLIGTLLDISSKTKDDLNARLDLVDIGIRPELHPTVDDKGKQILPPAPFTMSRENKEILCSVIQNIKTPDGYASNISRCV
NMKDCTLNGLKSHDCHVLLEDILPIALRSCYPSKAVMHIVNGLARFFKKLCSKVIDVSELAELQQSIVMTLCDMERVFLP
SFFTVMVHLLVHLVEEVKFGGPVHYRWMYPLERYLYIVLLYYINYTMDMTYFFNYI
>EnSpm-11_ZM_p1#DNA/CMC-EnSpm 1182-3707 (may have more exons) [Zea mays]
MGDRRDWMYEGFKKGGCHTSEWFAKTQIFLDHAAALSQIDNIRCPCNKCRNMTSHTKRQVTLHLCSHGFVPGYKVWYLHG
EDAERATEVEVDDGEDDVDRMDQMLEDLQPELAPDHHDSPTPEVQKFFDLLKASEEPLHGQTDVTVLEFVTRLMSIKSKF
AFSINCYKELVDLISEVLPTGHKMPKDMYQSKKLLEGLGMEYEKIDVCQDNCMLFWKEHGREQKCLKCGKSRYVELVNED
GEKVVTKVAHKQLRYMPLTPRVKRLFLSRKTAMHMRWHKDCMDRQDGLMVHPSDGDAWKALDKFDPDFASDARNVRIGLA
TDGFTPFNMTAASYSCWPVIAIPYNLPPALCMKYEFMFLCLVIPGPEHPGVRLNVMLQPLIEELKKLWQGVEAYDCFKKQ
KFNLRVAYLFSVHDFMAYGIFSGWSVHGRLTCPYCAKDTDCFRLSAGGKICYFDCHRCFLPFNHPFRRQRKEFRKGTIVT
KGPPKRRSGIEITEEHMKLVLDESGKRYQGFGEEHNWTHICGLWELPYAKSLILMHNIDVMHQESNFCQALINTCMDFPD
KTKDNDKARMDLAVICDRPTQVLRENGGKPKADYCLKSKQRREVMKWMKDIKFPDGYAAGFRRSVNLKTMKMNGLKSHDF
HIIMERLMPVMFRGYISEAVWKTLAEVSYFYRQLCAKEIRRDVMEQLEKEAPVLLCKLEKIFPPGFFNPMQHLFIHLPYE
AKVGGPVQYRWMFHIERALKKLRAMVGNKARVEGCIAEQFKLKEVAHFTSCYFAEEHNVFARKKRYHDDEREMPPCSDLS
IFQTNGKAVGPPKAYHLSMEERKSALLYMFTNMPEVEKYFV
>EnSpm-22_HMa#DNA/CMC-EnSpm 709-5381 via genewise with EnSpm-19_HMa, 4 introns (1345:1569, 1711:2948, 3107:3247, 3405:3548) [Hydra magnipapillata]
MSIADPLACGFAKVAVDIALTEKHKIKHLVNENYKVFRSRVLNHYYKIYIXKNPIFHFDYEQIKKRXPVIVNHIKNLKGS
RSKLYLKDILLTFSKERFNNLGSSKMLHNLFNCXRCITNKRLKKVLEKFPVKCKRFKYKAEKRGIIGNKTFNXTNKALIK
LDQDFNKKHTTKFTKAMKINLPNPHNEKMKHRYDANKIKNDIENQWKETSTIRVFGVPVSLSNRDKLRLTHSFETQKNAN
KRRISELSALKNVNYVQLNEERKEARNPVGSIEKYSWKQVECLDEISSYPNGFKINLSELARKFFVKNKKSNSITPANGG
HVLKKFLKSMKCYLSRLNLKRKMSDNTYFDGTNINNIQYRRKKQRDISLQCELTNKEINQQLEKKIDDGIYNSREKIVSQ
KYEKVYISSENRTITKKEVLIEGRKIFLKDIRLNMFKDHEIFIKVQNNNELEALSRQQIVDVLDNIQEYKDDFDNLTKNE
LIKLKTYERTRNLMFWHNCSSMSNHTHFLVTVSVMYDTAIFLSSFEYKQKYGEETNVQAEVEKPYLYILGRCLSNDQQLL
YSDDRINDILQLSNPLEFKGTPILDVARIFKGDNPAAQLEAGHQKGGNYFCWACNMLAXLLKKTGFSLTQLNLLHYEILN
NEPMHGISNHIKNILDELLYLVEKKTKXVVENIIKTSFNGIEAKNAANYRKSLLIVTNWFLEHYKVGHFVFKLLLTLXDL
YILEEFRSTHSILRLKNTTFVHAIIIKEHXEANLKNNKRKFFGAYYHSITSHAPLQXRLFAGRTSKVEKEEAMFQYLKXV
YKKSSNYHSDNVIFNAIICNQAKRYLKEEKKLCDGVSILYKFYQPMHXSFNDTKISFTWIEKNSNKFQKHLEKSADYLVE
GINVWWKEVGNGVVFFDINYPNNXKKKLSHFRSSSMQQQSEYLEKCWKHCLKNKHKIPAYKITIGANMFYLDTLQFFQTF
STENLSRNSIISLDIILI
>Transib1_NVi#DNA/CMC-Transib 1016-2970 via tfasty with Transib1_SP, 1 frameshift. [Nasonia vitripennis]
MNTFSIQNGILCDILLKLDNKSRSVNCLIDYIKAQYELSDEESSIVLESSFMVTFKSKLSAVLYKEHIFRKKYVSWIADN
FVVNFDNNLKRGRPVTDSFEGSSRSTKYRIIQSITSSFSQEEIKKAFYKNLRDSGKKHLIKQIEDLLSDPNCSMNNSVSE
EIIPFTEDEAIALIKDAKLSKWQYDTIRKQVKGKNVDIFIPYKQLFSAKENCYPISSSLSISEKGGSVDLQQLLNHTSKR
LLQIPDILSNFKTSEAEYSLVLTSKWGCDGSSDHSQFKQIFSDGTSSDESIFMMCMVPLILEVNTSDGATVIWRNPQPGS
TRHCRPISFVYAKEISEKTVADVNAMKTKIESLLPSIVNTDVNQFKIHHSLKLTMIDGKVCQAITGSPSCATCCICGAKP
SQMNDLYKLAERTENEENFEYGLSSLHAKIRFMENILHIAYRLDFCKWQATSDQQKTTIQCQERKLRIQHRFRQETGLIV
DYPQQGSGNSNDGNTARRFFRDPALTAEITGVNESLITRYSVILQALASGSKIDSDKFDDYAKETAKLYVSLYDWFYMPA
SVHKILLHGANIINHFLIPIGILSEEAQESRNKDLKYYRQFNTRKCGRIYTNIDLLHKLLISSDPYISSLRHKAKNIKLD
VDDAVKNLLILT
>Transib1_Dwil#DNA/CMC-Transib 498-2516 [Drosophila willistoni]
MSCIYPHIILEIIFLATMSVCKRALFTIWHTEPDASKKTFAVETYIYTNIIDKTKFDKSQCAYIAMKIKNFIKKLTWKWK
ENHRICQNFEVNNQEWLDDDLVLVDQISNVGRPKLSFGDSQGKTKKKKLSDIVKEIPSNELVSAASTSLYNCGKRSDESL
PKKVISFIQSDDKQPINYTPEEALALYIDGGYTKKAYTDLQRGTKKRNANIFPTYDVLRSAKKLCYPSGLEVTDHSFEVP
LQNLIDHTVSRIYKAHYKDFPSIENNNGSQLTAIYKWGCDGSSGHSTYRQNFNDLNACMIDQHMFSVYLVPLEILRGSEK
VWKNEKPSSTRYCRPLKVLCRKETADLVNDVVNNFKSQITTIQPTIVESFEVHHQFYMTMIDGKVFSVLAESSSSVCGIC
GTTPKKMNDLSDIKNLPCKENLYEYGLSSLHAWIRFLDCILHISYRLIIKNWQVRSTDKSAVDIRKLEIQKNLRKEMGIL
VDIPQPGGSGNTNNGNTARKFFHDAKLAAKITGVNYLLNSRFSVILRTLASGCEIDTQAFKHYAFQTAILFVDKYPWFYM
PSSVHKILIHGAEIIEHFALPIGMMSEEALEARNKDQRKFRLNHTRKNSRSNTMEDLAHTLFISSDPFITMLAKSTDKFS
KKDQFLDKDIISLILSKDAQEELSDCTTSDTD
>EnSpm-11_OS_p1#DNA/CMC-EnSpm 1319-3847 (may have more exons) [Oryza sativa]
MPKQMDRTWIHGRQFTPAYMEGVKQFMEFVGQRFDEHVDIPCPCCRCLNHTSLPQQEMHDHIHIFGMSSTYTRWIYHGEL
VDTEDVEYLEQVHETNHNEGTDVGGYEPEDDNGVPELIGELYTAAEEDGQPPRFARILEDAKQALCPGSNHSRFSFLVRL
LHIKSYYRISNTAFTELLKLLSSAFPQCQLPKSYDEAKKYLRELGLGYVSIHVCKNNCVLFRKEYANMDLCPICGESRWE
DGVGDRKVPRKVLRHFPLIPRLKRIFASKRTAEDTQWHKIKRKPVDNEMSHAADGEAWKDFDRKYRTFAEDARNMRLAIA
TDGFNPFGKVSNSYSMWPVLVMPLNLPPWESVDPSNCIMSLLIPGPTSPGKDFDLFLEPLIEELLELWIGVSTYDAFSAR
KFNLRAAVLWCIHDYPALSTLSGRTTKGYYACIHCDKNPLSRALRNKIGYFGHRRFLPRTHAWRRSHAFDGHHENQVEPG
KFSTDEVLEQLEKVKDVRPGKHDTSKKRKRGEDEGPLIYSRKVSLWKLPYWKDLLLPHNLDVMHIEKNICDNILGTLLKI
EGKTKDTVNSRIDLHDMNIRHNLHLQQDGNSVRIPQARYVLKKEQRIEFCNFLKGVKYPHGYAANLARCISSDGSKVQGL
KTHDCHVLLQRIIPAGIRGFVDKDIYEAIAELGNFFRELCSRNLRIDVLKRLKKDIPLILCKLEKIFPPAFFDVMVHLAV
HLPDEALLRGPVQYGWMYPIERRLGTFKNSMRNRARPEGSIAEAYVASDTLTFCSRYMEDVDTRFNRDARHGDGPLDGNS
SVFMHGVKLIGSTRIQYMEDEIMDKLVWYVLNNCEEVQPYLE
>EnSpm11_SB_p2#DNA/CMC-EnSpm 7155-9395 [Sorghum bicolor]
MSQFREMMSQEEVAHEDAPEPTTATTSPERPCQSRKRKRQGLKRGERGLNQFPDDTYAITDVSPTGQPLAPEEALPKYRN
AIGFCVRDFLDITVKNWAGVSNNHKIKIWDKIKTRFQFPRNVPEDLVKAYTMKQCAVSFRNWRSEMNVKYAKTGMDPTSK
YNITKGQWAVFLEQRNDPNFLARSEANSQLAKRNKYHHHLGTGGYRHQVPKWRQEEAAKKAVGLPVLSEQVGERSANWIR
ARKPKETETGVSFEDPMLDEAMKSIFAVAGMQQEGKFTPRRERDILSVGLGNPEHPGRVRGISSKEGWKDGFGPQWANEY
KKRDRYKEQMANYFQEEAKKDFQEMMGKLLENPPPELMQKLASAMSNAATQMSTQAPQMQLVPVVSQPLVASSETIIPSS
VASTANKDHYPVDDIVTSTPCSLVIRYGINNHRTREVATGKAIPGGPKYHGADIPKDYCRVEVSTVVQGYEDEILDIPGP
EDIVKLGQAINNFILWPRRDVQLREPPPPSQEMPLTQESSAHVDPLPNPPPSPPQSLPDPPESPLHVFPVHQPSPLHDLS
TPQSTQSPPPFNSTPSPQLKDPEPISEPPKVPKKKVFPIPKLISPFEPKKKSAGQVRFLSGIASKRTIQEHEISELAKSE
VPAPKVITPVNFKVPTAEDYKTIPKKYVWGKPLLSRTKLMKKPSGIKRFHDWYMRASSAGIDTISMRIPQIAFLSQSTDK
CMLTFDDMWALMNHEMLDVQIVTAFAL
>EnSpm4_SB_p2#DNA/CMC-EnSpm 7712-9961 [Sorghum bicolor]
HEQEVLSQFHELKEILSQEEFTHEGAPEPTTETTTEKTTEKTDDRKRKRGDRGLNQFPKVTFRITDVSPTGQPLAPPEAL
PKWRNALGFLVRDHLDITVREWAKVDQNEITRMWDKLLTRFVLPQGSEDLVKEYTLKQWGIMFRNYKSELNSKWAKKGLD
PTKRYKITAGQWAVFLEQRSTEEFKALSESKSELAKRNKYHHHLGTGGYQRKLAQWEQEDEAQRAKGLPALPDQLGRRGS
RWIRARVPAKEAKSGLSFSDPMVEEAAKNIFAVAAKQQAGEFKPQREKDVLTVALGNPEHPGRVRGISSKEGWKEGFGPE
WEAMYRKRDRYKAEMSNYFKEEAKREVEEVMSKILSNPPPELMQRLATAMSSQLSGQQPPQMQLVVAPTTTEQAPVVPSS
IASTGDKVRYPVDEIDSPVPCSLVIRYGFNNNRTREVATGLAIPGRQFHGSEIPEDYCRVEVLTVVQGYEDDMLDIPSPE
GIEKLGQAIKNFILWPRRDVLLSQVPEPSPREVPQTQESSHPTSLPTPPTSPILHPQSPPPPSPIMPQPPSPPPSKPTPP
PSPKPQASPPSPKPHASTPQSSTPPAPKNDDKTPPQPKKTKFSVPKLVSPFEPKKKAAGTALFLSGIARSRTSKLVDLAE
HEKEGSKSFETRIVNIRPPTKDDYKFVPTKYEPGRPLLSWDKLKKIPAGIKRMHDWYMRAASVGIDTINVIIPPTAFNSE
RTKAIVTFEDMWLMMNLQRLDVQLVTVFAL
>EnSpm-4_NVe#DNA/CMC-EnSpm 1017-4784 [Nematostella vectensis]
MCRTFLSPQTCGFGKVAAIHAAKKSRTLHRDLNKGKAKFDARCYQEQFRIFNEVFTDRTQEYSVDFRKFGSDFKSLQVAL
NKWNPRKVAEKHTFLEHFSVENWSKLSITKKKEHTLYDCEGCFVSSGKEQALFPFKSPRLKSKAKENPFRVANTLKTNQV
SYTKSELQEVAEKMYDTMNDTYSNLSGGAPFNAALSKVAQASLQLKQSKNEKKARRQIFRNVKQVTEEKWKETSLIRCIG
NRQSFRARQRERLAMTLQPRSEEKENRATKKNHTGNISKVEWDKEGLKEEVSAYEDGEKVNWSALARKYNVRNRKGEIAS
NGGQIVQEYLVQGGENIHRFKWKHEDSQEGRRTRRKKMRGLGGEISLPTPETNDSLKQQLRAKIANGEYNVGELVVPTRY
KKLILEKNGTISRKEFVCEGRKIPLDDIRKDLLEKHSRFIRQNTDEHYDEMPRLQLVQRLKELNEFDESEGLTVMRRKLK
NIERQRNLMVWHDHSTVANHGYIVFMVATVYDPAFFLTTEEYSTIHGVQGFDVQTEVEKPEIYMVGRCSSGDAEQLSYVS
TRCGCIKGLSTKLDVAPGVPVTDIMRLFNGDGPAVAYESGQQKEGHYFCFTCGVHAILSGDVFHCQHVSLKDKQERILEG
VVGRRKSLLSKPKPLEDLSKEDIREELRSRGIEFKQEDNKPIIEAQLCDELSGVKRVPALLYCQPTADLETLGIGSYEEL
ACEPMHDISNHIGNVLQELPKHLKPETKAIFIDAMELTLGSKDTKRACDHRKALILITKMLERHVSNTLRTLLHTLVEMQ
EILYLKDCDRCPRIIFRYHNISFLHFLMIKLEFGTSPSKLTARKLYGKYLHNLVSHQPIQLRIISGPSCNAENEERVFNA
VKSITSSTSSYQPAHIVSNLFIRLQAEHNLGFGGGSVRHQQSEISSLASGLDAFSNTQIECHILDDPLYSKWWQAHLKRI
SDFLLPGEGVWWQYHKDINVVEFFYSKSESSAKAEGPLLHHFRSSSFQAEEKYLEQSWQECTERGIKLPMHYRYEPNARG
KVIKQITNFLRQEDEEKNEDVELVEEDVDDTAHNITADEGEEKEEEERVISVSLADDLQLDQEVQPAIQPLCQNDRGTDL
IEETPSGATAYPEAGPEKQTEETVSLGTKLERAVQVVLGLNEEVKNLDHARSLLKKHPTDRDAIQDYEQKLARVQTQVLS
KNADLKKSLILWEKGHCLKSCMSPTIEQIKQNEMTSTVYKKLKHCEALLGQWRIGF
>EnSpm-8_HM#DNA/CMC-EnSpm 7112-8963 via tfasty with EnSpm-5_HM, 1 frameshift. [Hydra magnipapillata]
MTSRSTIWRKTNSLIASILENNNYQSSTGEFFSSPIHNSIDTFESDSTLPITELSSTSDDFSNSFESFHSKHCPDLAHDL
AQWAVKHAVTHFSLNDLLILLQKHGHEDLPKNSKTLLKTPNCVLTENMCSGDYIYLGLATGIKNMLQVDEASINNNIHLI
VNLDGLPLFKSSNTQLWPLLCQFGSKPPFPVAFFCGKQKPNSSMEFLRQFLEEFKMLSENGLVYKDNFFNVSLKFWTCDA
PARAFIKCIKPHNAYHGCERCIDKGEWQGRVVFNQVNSVLRSDEQFSKMYYKDHQVSRSPLIDFNLPCVSTFVLDYMHLV
CLGVVRRLIIFWTEGPNICRLSYVQINRITEKLNDLSGKMPSDFVRQPRSLGEFKRWKATEFRSFLMYTGPYVLKNVLKH
DLYIHFLCLSIAIRVLDDNNSSSNAIGYASMLLNWFVSKSVDYYGPTFTTYNVHNLIHLSEDVIKFQMTLLDMSVFSFEN
YLQRLKRLVRGKNMPLAQIVKRLGEIDCLDNKFLRKKHKSKVVPGGKDSWFFLKSGQLAQVIEINFDSLLCEIIPCRLFN
DFFVVPCSSRYNKILSVPKNASVKRKTVQKTELKRKVISFKGRTRNVVFPLCHDCVF
>EnSpm-5_DR_p1#DNA/CMC-EnSpm 4629-7061 (may have more exons) [Danio rerio]
MMFRCYICKSLFATTVKLIRHLKLVHSLYPGKKFELVCAQDGCFLQFKSYAGFKKHLTRFHFRGVASSSGNISIQNQHAP
NPDEALVSDTEQMTDNDAQVVECSSLSRDSSREMCASIIAKLQANGVANNLILSVIESMEDFVNDFHTNLRESILNVVPV
GSTTRSSVEEVFNNFHNSFSDFNTDTKWRKYFSKKWGVVEPTEIHLGVRYDSRRNTTSGMYEQTTVNDTFIYIPLLKTLE
FIFRNEEVCKLIQEQRQSDMYREFCDGQYYKRHPLYSICNNALQIQIYYDDFETANPLGSKQGIHKLGCIYFVLRNLPSH
VNSSLMNIHLISLFHSEDGKKYGMDKILGPLIDDVKVLEQKGMKVSFSEEPIFGTIAQITGDNLGLNGILGYVESFSAKH
YCRLCLTDKVLAQEVFSEDDPRVILRNRNQNEKHYKYLADNPNENSCYGIKRNSILNTLTYFNVSENFVLDIMHDILEGV
AQYEVKLLFEYMSCGLIPCDSIPQRLYAFNYGFLDRNNRPTKVNLQHPGNSIGLNASQTLCLIRNIPLIFGDVVPEGDKH
WHLMLLLLQIVDIVFSHCISEGMIIFLKHLIVEHHRLFKDLYPSRNLIPKHHLMIHYPECIRQIGPLIHVWTMRYEAKHR
FFKKNLKNFKNLTKSLAKKHQLAIAYYWESCTSRGIESGPVSNELLSDLEKCDFISEQLNIDLSSEVTITPWVKCHGTEY
RKNLVVCLDLVEDVPVFGKIVQILIKDGVYFLVSCMESEFVEHLHAFRVFAQEHSLVLKKTEQLFYYKPFDLQMTYGNDS
SFYIVLDCYL
>hAT-79_HM#DNA/hAT-hobo 775-2976 [Hydra magnipapillata]
MAHVIKEIYETSDEVIELNAILNEQISSGSVLLKAKTTGVGKSKVWMNFSLLFKLHATKPVKNIAVCNICKKAVHQKLSS
TTTLIRHLKTHAPTAQDPSQSILPVIKKENSTFKTSVQVHKNHKNAMLNSCLALFSTDLRPFVTIYGEGFESVINTAIHL
GATYRGHITAKDILPSKHKVAEAIKTSVSKSRITISRILKAKLERSGVGITTDIWTDDFHRNSYLSMTLHWIENNQVQEA
AMAFSVLPPISKTATVVSRYLIDNFKKVDAYTAGGLRRIIFTTDQGSNILSAFKDSGFVVAIEDIDIRPEILQSTRISCS
SHILNNVLTKLFKPSELKIHCLSLHDLLHNCYQVVTFVKSGNVNAKLSRTLKKYVATRWNSHLALFKGVLLMYDELLIHL
RGTKKMVAIEAIDKNQLEVLVKFLKVFKAASDDLEGSTYPTIYMPILLNFSMQDYFKSFSSSFAQIPLNITPESDNPESY
VIDDDTDLANTLPVENFLRWVNDSDFETQYDSQVFKQDYENQRDIITYLSSFATDILSDKFKINHIHCIGLFLIPFCKSF
KVFGQNASAKLIETKENLRRLIQYCNFEKTNSSPTNSPPQKKQHSSTKPFSNHILPSLSSFIDSTAPVENNEIEQYSRIE
VVAPNVQBLKNLGNEALKWWGKNKETFPVLFIVSSFVLAIPATSAPSERMNSIAKLITNDRRANLAPETIEALMLLRMDK
ELQNSHFNAKDKH
>hAT-10_DBp#DNA/hAT-hobo 443-2258 via tfasty with Hobo_tp, 1 frameshift. [Drosophila bipectinata]
MSSEIIKNKIERGEYTVTPAHKKGKSVIWTILSDILQEDQTVLQGWIFCNTCRKVLKFVANQTSNLSRHKCCLSLRHPKE
AKKVSTLDKKTAIEKCSEWVVQDCRPFSAVSGTGFRNLVEFFVKIGAAYGANVDIDDLLPDPTTLSRNAEKEAEEKRNLI
SKEVKEAVDNGEVSATIDMWSDQYVNRNFLGVTLHYLKDFKMIDIILGLKSMDFEKSTAENILKKLKTIFSQFNVENITN
IKFVTDRGSNIKKALNNNVRLNCSTHLFSNVLEKSFEESHELQEILQLCKKIVKYFKKANLQHGLNTTLKNSCPTRWNSN
YTMIKSIVDNWTTINEILGDTEWVTKLTSINVYSLKIILILLDDFERIFKELQTCSSPSLCFVLPSITKIKTLCEPQPED
FSSISVLKERILVNVNTIWEKNLSIWHKTAFFLYPPAAIMEHEDIVEIKSFCLEKMHYFNDKTNEFPGGNSFSSNESRPG
SPNVQLATSSKNQTIVPKNKFFFSHLVAYSNNGTKSAFEELESYCTERVALCEDFEPIEWWQSKKSCYPLLSKLALQLLS
IPSSSAAAERVFSLAGNIITEKRNRLGPDTVNNLLFLHSYINKFQ
>Homer_tp#DNA/hAT-hobo 334-2211 [Bactrocera tryoni]
YILKIMAEKEDSIGCKIANGSYSLSGKRKGRSFVWNILSEILKPDGTLLEGFVYCRTCLKVLKYYNGQTSNLIRHPCCRN
IKTSQELRTVTVEDKNEAVKKFTSWVVEDCRPFSVVQGSGFIKLVKFFIKIGASYGEHVDVEDLLPSATTISRNVQKCAN
EKKEELKEEINNIVSSGGASATIDMWTDNYVKRNFLGVTFHYQKDLKFFDLVLGMKSMNYESSSGDNVLNKLSSMFKEYG
VQNMSQIKFITDRGSNMVKALKQNIRLNCSSHLFSNVLDKSFEETEELTDVLASCKKIVKYFKKANLQHLLPTSLKSQCP
TRWNSNYGMIKSIIDNWFEINNIMTDNEQSQRLLHVNVSILKVLVSMCKDFETVFNKLQLCSSPSLCYVLPSILKIKNIC
EFNNSDIAAISVLKENIRKKIEEIWVVNLSIWHKVATFLYPPAINMQPNDLDDIKNFCISQIQNNAISAPTSATSAGNDS
LSPTAISPTLTTHFSFNESNQIDQSHSSSLCSKTGGDTFFFTYLVKRTTPQATEKPEDEVERYSREEVEMTENFNLMEWW
QSNQSKYPHLSKFALQIHAIPASSAAAERSFSLAGNLITEKRNRIAPGSVDSLLFLNTYYKNYNA
>Hopers3_tp#DNA/hAT-Pegasus 186-2645 1 intron. Previously presented by 54638886_Dps, gi|54638886|gb|EAL28288.1 of Drosophila pseudoobscura. [Drosophila persimilis]
MTPKKREKTNVWIYYVNNTESGLATCRMCNGTLKNNRVSNLKTHLWNRHNIKVLKITPIETKVDESSDLDSEISEKIKRK
QKTTAVHKKQTLRQKRNALWKYFENNIDSGQAKCKICKAPLRNRVSNLKGHLFQQHDINLYYAKRQPMKKIRVNVNSLLL
RNNKNDVWNYYENIIDSGIARCKTCNGTLKNNRVSNLKTHLLKMHNLNLSVKKIQPIESASSEADSVHSVKIIPKEILKI
NVNRKQLLRSFIGLVTEDCIPLKVLDSPNMRNIIGPICDGLEASAGKPMSLKASSCIKHLQLVASNIRLDIKTELKNKLL
SFRIDSASRLCRNIVGISAQFLSDAQIKSRFLGMIELRKEPPKNVAVEVINVLKRYDIKVAQMVSATSDNGEPIEESGDD
CSNEEYLKKIELVEKSPNILLGHVRVSRCAAHSAQLCVLDVTKSSEIINYIFTCRNLTKYIRKPSNRYHETFEQKQLKMP
QLDCPTRWGSTYAMLEHLKLAKDVIPKNESVRSNIQDGSYVIDSFWEFIESYCVVFGPLQKTILKFQEEQLHYGNFYAQW
LKCKICTEKIVKDASQTLTTTIGNIILNSIDKRTKKFMNSRRLVSCLYLDPRFHHTLTAEQKVKARDYLKQVWDRITEVN
PEVTCSASMVSIPDQSVGFDEEDELLNQYLTQGLLEANVGSKSDVYTKIETLQLPFHRIDVDVLSFWQAKENSDQELYAI
SKVCFAIPPTQVAMERQFSTLRLMLTDDWNQHGQETLENILLVKLNPNFLESAIDQLPIFQNDHDPPPDRIYKRRRFCS
>hAT-9_DBp#DNA/hAT-Pegasus 396-2341 via tfasty with Hoyak3_tp, SW:1511, 1 frameshift and 1 stopcodon. [Drosophila bipectinata]
MSLTNKSFNIFKYFEEGDNGLVKCKTCFRMLKKDRAFNLKKHLMLHDIRPEQKENDSSGMQPKKIVKHQQIKVQINKKQL
IRSYIGLVTENSVPFNVLNSDNMRNIIDPICQGLKEKSGKNFSLNGTKCKSVLRQVAEKIRQEIHNECKHRILSLKIDSA
TRLDRNIFGVSAQFISSDEIKSRVLGMVELRGAGSSSAKNLAKEILSVLDKYGISLSQIVSITSDNGANMIKTTKILSEM
NLSEDDMEDAGIQENVEYIKQIELFGKTETALVGDIQICRCAAHTGQLCALDVTKNANIREYLLMCRNLTKHIRKHRDLF
ELKNFKLPQLDCPTRWGSTYNMVDQLSKAKSILSLIETVENKSRDDDFIVNEMLWEFMESYVTIMAPLQKTIVQFQEEQL
HYGNFYALWLVCKLTTNQILSKSAPDSIIYTIGEALIESMETRTKKLTSNVGFEACLYLDPRFHHILDSSQKERAVSFLK
TLWAQIKMHSPIATLSSSTSSIASEDSNSKSNFDILDDFLSVSVVPNESTDVHAKIETLKLPYMKSSTNVLHFWKERKSC
DAELYELSKICFAIPPTQVSNYYLIRNKILISKHLxVTIERAFSSLKLVLSDNRNRLSHDTLENILLVRLNSTHLDNAID
NLSLFEDDD
>HATx-3_SM#DNA/hAT-hATx 690-2552 [Schmidtea mediterranea]
MASNEKESWVWKYFIKRIVNRNTVGAKCTICKNEKDLVANTSTLARHLTSIHNINIKSAHLDSTIIATQRVQTNVISFLQ
RKTLEYLIAELAAVDGFSIRGITNSKFIRESITAKGYHLPRCETQVMGLVHKFYDQVKEAAIQQIIDDKSENLKFSITLD
EWVDATARKFFNVTLNRSRNGVINLGLVRIIGSCTAEKLFEAVNNHLLSFGIDFTRDIVAATGDGASTMLKFGRLSPVIY
QICLNHAFHLGVIKTFYHKKERLLDINQAIETEVLEDNFNEDEYPMEGDEDEEFYLNEDIESMLASVRRIVVLFRRSSLK
TDLLHKKIQELNVVTENDISAEDELQKKQLDEKVKLQLDVKTRWNTIVHMIRIFIKYYEPIKDALIELDEERMLYGINKE
NLQMLINILTPIELAVLELGKRDATLRKAMVSIEFVRDKISQNTSAISLKLLQNINEYIDDRMDPNLFHLIECLDTAAVP
PNSVLKFATEIMKRLFGTDETNDENESDNILATVSREDNNFSSLAQELTQRINSSSIPKTLQLKFDKLKQEFQIFKSTGN
RTENLERLRNALDTIQPTSTESERTFSVAGNFLSKLRCKLSDKSLNALIFLKYYFKNPWC
>HAT-9_SM#DNA/hAT-hATm 218-2773 [Schmidtea mediterranea]
MAEQMSYELTEPCTTSSEGKSIADHSRSSELPTTHPLSVSVPSDCKNKPPTRRATEVYGIGPAICSDDATITGIRLPTCM
QVLRCMMYHCNVASHSQRPGSTGAQSRFTTAKTVLKQVTKFYEKANIPMVSERRACEKIVKLLDDNNKLRSIDKTRRDTP
ATQCKLEAMQTLLASTFQLWPPNVASLVRNAEDLAFLESMKGDRTASFGAFDKSLALKISRRHLRDAATSERLKRSRKDI
EASTSTVSSQALNDDSSGSGGSTEEEDVTEQALTSEDDLEAKAASQERTQSQRRKPTGTMAFIPPDVLSRPNLVSLATRL
KMTPTQQAAFTHGLITESGGDVTRVATSYATADRSRRRVVGEIATDIHTNWEPPKLCTLHWDGKQTPTLQNQHVMEDRMT
VVVGDASQLKLLGVPSYYKASDKSCGEIIAELTMKLMTEWHCADRIVNMTFDTTSSNTGHLTAACIAIQDKLQRAVLWSG
CRHHIGEVVLSHVFEDLKIEASRSPDVTLFTRLRTNWDLVPHDSSQIRPFCPADHNTEAQQLLAEMKDEVVAVATGKIEF
LRDDYHEFTELALLYLSAKAGVVTLQRPGALHKARWMAKLIYSIKIALCENQIGELPPGTITTRHQVSKIRVFVTFVTHV
YIVWWLTCKKTADAPWNDLQLYKHLLEYEAIDKLISQSAVRAFQRHLWYLTAEMVPLALFSDCTPRSEREALAGALLKIK
PSIELQAPLNRFGNGWGKPKFPTSINASTRLCDLVGEDSWFTIYRLQLDSSFLELPVSEWNNSEAYMNSAKNVAAVNVVN
DCAERGVKLSSDFVDTARSDEHFQNVLQVVEKDRQEHPDLRRQIKFKNEKL
>HAT-7_SM#DNA/hAT-hATm 620-3030 GENSCAN_predicted_peptide_1|762_aa (1 intron) [Schmidtea mediterranea]
MNSTRSKTKVYLLESYTEVLTGGKLPSLRQVLGLFLHEHKENGKTIREASTIAIESTAKFWQKARIPTRAVQHCQAKLES
EFDVWRLLKKNASRKAETQKAKEAAFCSRLDDLFDIAHADALKNIKIEEDREFLIAQREKGRRGSMLGLDVTLTNKEQRA
SEARDKLAARRHRAVCDQQQLDAKAELSELDSHSNSSTSESDESGDEMQGATGGVHTPVRSQRKRGRLEVVSPGLAAMLD
RTKVSDRKAVYLVAETAKSLGQDVKDLALNRSTIRRQRQDHREMISGRLREEFRADVDVPLVVHWDGKMLRDLTGKETID
RLPILVSGKGISQLLVAAKLQSSTGKAQAEAVYAALNEWGIADRVRAMSFDTTSSNTGLANGACVLLEQMLGINLLSLAC
RHHIFELVIGAVFQTCMGPSSAPEVLMFKRFQSCWQFIDQASYSTGMDDKDVAAVLMDTRNKLLEFAESQLQIMQPRDDY
REFLELSIIFLGGVPARGIRFIAPGAMHHARWMSKVLYSLKVYMFRSQFDLRPTEVKGLRDICTFSVSLYMKVWFTAPCA
ATAPHNDLTFLQALIDYEVVHPAISKAASAKMAKHLWYISEELVGLALFDKDLSTATKRELVSAIKENDGADKPPKRINI
DIQSVRGKSLAYFMTKHSHVLFERLELPDSFLAVDPEEWNGHEDYEHAAALVRDLKVVNDHAERGVALVQELSGMLTKNE
QQFQFLIQVVQENRRLFPNSLKQTLTSENFATDIHESDANV
>HAT-77_HM#DNA/hAT-hATm 335-2563  [Hydra magnipapillata]
MAVSTRKQSEIYLLGTVKEEFTGAKLPSIQDVLGVFFYHLKVVEETKHSAAKETIRQLFTYWSRARIPVRDERRAIKKLE
DLVLTWDNLKKNKNRKTETQKRNEEAFIAEFPNLFDISHGDALQMINIEEDKQFLLAQREPGRRGSMAGLDKNLENKEKE
KEKRDNQMKKRKDASEEAKRKMFDTAVLEDTSSDESQDADFSGPSTSSLTSPNPCLRKRGRKNILTPEVLGSLDRAGISD
RHAVHTVASVISATGQNAAEFAVNRSSVRRYRLKHRELRSKELKVEFQSHGKPLTIHWDGKLMKDLTGDEKVDRLPIVVS
SDGVDQLLAVPKLSSGTGHAICDAIVQIIDDWKIKDDIKAFSFDTTAANTGRRNGACVLLEGKLGHDVLYLACRHHIHEI
MLEEVFSLCISPSSSPEIQLFKRFKQFWPNIQTADFHAGIQDDAVMAQLDSETRQRTLSYATEQLHTEHPRDDYRELLEI
TIIFLGGVPPRGVRFMKPGAMHRARFMSRLIYSMKIFIFRNSGFHLTDCELNGLKDLCVFAVKFYIRGWFSSRLGISAPK
NDLLLCKELLASGNCTSLAALKKLKGHLWYLSEVLVGFSFFDDSISVEDKRKMVKALDNPGVQEPAKRISLLDQDIREKE
IPDFVTTNTKKFFSALNISTSFFDEDPAIWRDLPAFTEAQTFVGKLRVTNDTAERGVALIQEYSGLRTKSEEQTQFILQV
VAEHRKKLPEISKVAVVESLKT
>HATw-2_SP#DNA/hAT-hATw 1230-5015 [Strongylocentrotus purpuratus]
MNPEAVSNFLNCFQSPPIKKEYMTFQDLSIFFSHFDVWQESSTECNGTQRECLLAYSKTVSKNHINVISIHFGNLRRKTT
YSLKKGRGDEVVQELHKLVSGLGPNCSKIGVLEGDVQAALCNEYDRERMGWAWMTNGVVLELYAWGRKNDLSTESFKQLL
RALFEVDDSVGSVSTHRLHNKIRKVTEQRSSGLNERDLDKFLNEVFVILPVSGNQASGVGGRRKPDGGKKRQSGGKGKRG
KGGSRPVRERVSRSQEKSNCKCRFRKECIILKTRLRKMRVRLTGVEKKLNDYKLSLAKSEVQRRRFKIKDEGRKRALDNQ
TKAVKKMQTELLSRKMKISLLEEQTKQFRKLKQQKGAMKVMWKKSQVRLNYLKKRNDLLSKTIQENKSLKRKLKKMTVKL
GKLASPLSEIVIQSIEKGKYTDEVRQVYQELECKFGVSSRNCEGVVRSIIEGLTKAEVGKLPKKDFAADMFQEARVLSQI
QVLDTLMNEDQSNLTIGGDGTTKGGHHYGAFDIHTQDGDCYVMGVRESVGGTAEETLGLMKEVLEDMCNVLDDEGPQKMN
KILQKMKNTISDRHIAQKKFNELLQQYKREVLPKVDNGWDGYSEIQKERAVSMNNFFCGLHYMVGLADQSSQTLNVWEKM
IFGETNVGAKKVGVSSKGNEGGTERLVRTVCKAIQDRGCEKSGKPVQFRAFLRERGRDWVPLAPFKGNRFNILFKNGAGV
FYLASDLKDFFNDYKDDNLLMRAVHADLHVPHYLAACRALGLIDRFVTKPLWQILETKENINTMNDRYKTMMSKFQEFAE
DSSEFMKGKCKIFDDVDIPNDVMLDKLVNHEGDDHLTQQVLEMLFIGFVTVTNRLVHDHLQDKYKDKDGEVESVPKTNVS
VERDFGMLDRTMKCKPKAKTNCLESIIMYSKNQTSKWVSTLPEDKRKQYMEVARKQKHVQKQKYAMRAKKIWEGREKAIR
DKRESKLHKEEKDNVRKETVYNEVKDMCGGIWTKANDVTVGLANQTPKQKLDILKLQLKARRLVFGDKNENGILNFSEKG
RVKTWVELNKQLLTLITKSQERARLVEDEDREITEALCAPNEKVEEYKIKMKRKREIELERARKRPKIGRQVQYNDLVGK
IIEHLIKEDNDEKWYSAFVSSKTNQGLNLVYLTDTNNVYSFSQEEIRADMETGDIYVKEIKATDLLGFKIRHKFNVEGKN
VWFTGYVIDAEEGEGVNKPCKVEYEYLEGEGEEEEDEDLETWEGLLLEDYWKGEVRLLEKM
>HATw-1_SP#DNA/hAT-hATw 3487-6711 [Strongylocentrotus purpuratus]
MDILFLYQFLYRLAHPDSIIHTSKPLSLRLKIAKAVRERAKLRKNKKAALPNFFNTEFVPPVAPPLQIPAKRTYEELHVE
NNEIKQKLAQLEEEQKKVETEYPDVVRESNRLQQELADVVIKHRNTLTTHAKDINKLMKEKAKLQSAYELKSNKLDEVNM
KVDTLKGKSQAKSEKINSLKKQVKRDSECKGKKVKKIHDLEQNKKEMEQQVAQKDECIERTKELMEEAKSERRAALKDLS
QIKRRAKESQCNLIATNEAKIKELKNTIEQNDVHVRELEQLNVLLEGDVIHTFEGGRFINEMRETIMVLLTECNVSMPKV
GNVITTVCKNLLGKLPDKLPSHGTLHRILNEAKFVAQTQIMEYMEEGGDPSNLQGNTLHSDATTKFHRHYQGFQVTLPDK
EQISIGLVEVGAGDAETYLDAFKRAISDIAEAVCSDQSTEQEKKIAALVTSVKNTMGDQGPTNPQFNKYVQSFREELLPH
VVSNWDSLSTAAQKEIGDMGNYFCKMHLFVNFATEADKVLKINEADVIAAGKNQFAFGTESGAARLIRTSAKALTQRGCD
MSGMAANWMTYLEEQNIKNHLISYRANRFNVLFYSAAATYYHRRHIFDFISTLPDPNNLLKAVQYDVQQTIYLAQIRALG
IIDKVITGPFWRLVERTDNILQLNNPLAIMQNKLKSWANDASPILNKEVLFENIEIHKDVMYEALFAESEDTDFTTYTQV
ALEMVLTGMLLILERQAKDQLEGGKFFAPSANLLKSAQNVPTTNNVSERDFAVLDVLVRLKPAASCHSFETYILWLHNKP
SAWLDQMTKEEKNKLLDMARCRYTSIRQQYLRKKDKLKQQHRQALHAKQEKKEKQEQRSRVTKVAATEGVFAYGGVWTLD
SYEDKISELQPAKRKAAIYAQLKYHKRVLDSKGNPQLFQKSTHGTEHSEGTLTDNLKTLLELNNITAADVEGARDQTNLQ
YHTNEKITTNVRSSKSERMKKISEQRNQIKAKQQQTLLPELLLDPASLVGKKCKQKCREEDGSVEWFTGSVTAISRFKQN
VISTEFDMVYDDFPEDTWTFPLLMDLKKGDLIIL
>TESSBIG_Osa_tp#DNA/hAT-Tag1 gi|54287453|gb|AAV31197.1| putative polyprotein  (RepBase entry has deletion?) [Oryza sativa]
MGGKYLWKPLLRFSGESYRFSPLSRSCAQDRRGDGVRPRQIRRLRAGEAGSRAVSGGNRAVRDGNRLGRRARGNPSVLKV
FARLGAVTVRFCMVTVGFVIYETIYVCACTYNYVVLLHNGRVEMSDSRDPVWEHGENIPPGWRCKYCHTKRGGGGATRLK
QHLAARGKGVTYCNSVPPDVREFFCRELDRIKDAGDQRKSDSGRRVEAARVNYYDLTGDADEEEQMEAAIAASRQDENFR
RDVEERGGTYEHGGGSGSAQPEARKGRSNPITNMLRRATSHRESPAVRDYNLASAKAPVQPRIDTGFFTKKGKQARQAIG
ESWARFFFTAGIPGRNADNPYFVSAVRETQKWGESVPSPTGNEIDGKYLDSTEKDVKKQFDRFKKDWDEYGVTIMCDSWT
GPTSMSVINFLIYCNGIMFFHKSIDATGQSQDANFVLKEIRKVVREIGSEHVVQIITDNGSNYKKACRLLRQEYKTIVWQ
PCVAHTVNLMLKEVGKMPDHEMVIESARKICRWLYNHNKLHAMMVLAIGGELVKWNATRFGTNYMFLQSFLRKRDLFMQW
MASSVFMQSKFSGTLEGRYAHACLSSLSWWENLEAVVNSVQPMYSFLRFADEDKNPNLSEVLLRYQLLKMEYDTLFANQR
DKFEAYMEIVNRRMHDLTNETLINAAAALNPRTHYAYSPSATVFQDLRQAFEWMTDIDTAAAALLEVEMYRRKTGEFGRA
LARRMAIDGKTSPAQWWSMFASDTPNLKKLALRLVGQCCSSSGCERNWSTFAFVHTKVRNRLTHKKLNKLVYVNYNLRLR
IQQANAQIRVEDDDPLQRLADLSFYETNNHISAWMDNARSNACPELDEDSAESDAPLPSQLVSDLVNLDDLRRTTGASSI
AEWADTNVGDTHIGKRKTRKPPKARPSKKVKGKGPRSTSVDSDEETQGSPEYQESNDSSSRTETDDGDDDGQGGQGTTNV
PPRGHTQQSDHHSPVQFTGEGDFTHATQDQDHGAPSSQRTTIAPGVRQQQQFSDIQQDSSSSFSASSFESGYPTYVYNRP
QASDYPATTWVYEWQEPQCSNISRLPSSYRGYRTKPCGYRVHTVDF
>193716080_Api_tp#DNA/hAT-Tip100  1-44,250-end (collapsed tandemly repeated domain) gi|193716080|ref|XP_001952490.1| PREDICTED: similar to zinc finger, MYM domain containing 1 [Acyrthosiphon pisum]
MCCIIGGALEMWRLEGGKFESRDSQKFYGWVGVLWLELGKGGSTCPENNESVDASNVEYISINDFTQSAGGSTYIEVNKY
ANDPALIPQFVSSSLLSYLVDLGPCQPLPNELIGNIFPVKTDSMGRSRSFHESYYYIKETVNQLPTKRLWLSYSPSSDRI
YCYSCKLFGFTKAKKSVMANGSNDWTNLNRNIKNHECSTEHLESEVSRGLYQKNYRIDLHIMENANRNVAENREVLRVII
EIIIFTARQNIALRGHDEKLTSNNRGNFLELVELLSHHNAVLKIHLDNQNKILNILGELVRCSILTRIKKAGLLSVIIDT
TTDVANIEQFSFIIRFVNIHGAIEERLVALEAAADGTGKGLYEKFCEITEKHNIDWKKNLCAQAYDGAAAMQGTYSGLRT
FIQRENSKAIYVWCFAHLLNLVVVDTCDSCSDTKNFFGHLQSVIEFMRARKRTAVFIDCQRDLYPEERICRMKSFSNTRW
TSHDRVINVVYKRFKALLKSLIILESFNDRVTSSNASIFKNICSTFSFVVTLIFMKKVFSVTTPLSNYLQSKSLDFIEAL
RLVNNAKENLLLMRSDIKYEQIINEAKQFCEEHDLPEKDFKTIRSKKRKRQIDEDENTNERLIEFGKDPEQELPNNCFNY
VAEWIDGISLENLKNEYKVFSTSVVSLHDGNKFPANLHNTSIIDETTSELNQETLQTSESEIDHEESEAICYNNTITVSS
ILHVLTSFDLVSAFPNLYLAYKALGTVPASSASAERSFSKVKLVKTRLRSTMGEERLESLILLSCEKDIDINIEEAINRF
GCSSDLLKSHLMFK
>193587271_Api_tp#DNA/hAT-Tip100 AA362 to end of gi|193587271|ref|XP_001945300.1| PREDICTED: similar to CG41389 CG41389-PA [Acyrthosiphon pisum]
NYNFSEDAIAVGSKRKFNHSWLQAYAPWLAYSKILKGALCLYCVLFPPKKVQGVLGSFIIKPFTRYKDIHEGCRNHISNN
WHQGATEAAKSFMEEVPINIMMVSGHQKVLEQNRKIISSIISNVLFCGTHDLPFRGKGQNEGVFYDLIQMRIEAGDQYLQ
NHIEKGKRNAIYTSPQIQNEIINISGTVIKDCIINDVKKAVAFSIMADETADISGTEQLSIGIRFFDDEKRAIREEFLGF
IELHAMDAVNIASATDHFIQNEGLDGTKLVGQGYDGCATMAGKINGVQTILREKYPHALFFHCASHKLNLVVNDLNCVPE
IRNTISTVKDIINFFRESVLRRKCIPNIPAFCETRWSQKYRSISIFKENFEIIVHALDKLSKDGNTATRKVAFQLYAVAN
KSIFIMSVILIAKYSKLLEPVVNALQSKNLDLLKCSNFIKKIVVIVKDHREHADTEIQELLTAANIAAENIGAEINLPRI
VKQQQHRSNPPVFL
>221119815_Hma_tp#DNA/hAT-Tip100 gi|221119815|ref|XP_002168121.1| PREDICTED: similar to hAT family dimerisation domain containing protein, expressed [Hydra magnipapillata]
MSSQTRQLLVERGPHQIKEFEFPINKGKRRFLPSYYSKVLSNGEVVERNWLIYSIASDAVFCFCCILFDNSSDISDWPKK
GYSDWKNLIRALTMHEKSVNHRNAFRAWKELGIRLKQKKTIDAEYQRIMDMELQHWRGVIKRIMSIIKLLASQSLAFRGS
TEHLFQPNNGNFLKLVELLSEFDLVMEKHIRRVQQESDKWSVTYLSNNIQDELINLMGNSILRKIVEITKIAKYFSIIAD
CTPDVSHYEQLSLTIRVVTFNSIQSKYEIAEFFIGFFEASDSTGEGLAKLILTHLAKLGFELKWLRGQGYDNGANMKGVR
KGVQNRILEKYPRAFYVPCACHSLNLVRWEALKKYVSQLTLKPLSATRWASRIDALKPLRFQLCEIYDALILIIEDVNRD
AETKVKARGLAKNIKNYKFICGVILWHDILFEINSVSKLLQSVTINISDCVRMLSETIKKVKSYRQSGYIQMKIAAKEIA
ENLECSTEFPDDTEVRPRRKKRQFDYEKAVDEPLTEEKKFKINFFNYILDITLNSLNERFTLLETHSKKFQFLYDILKLK
DIDDKTLENYCSSLEFILSVENETDINANDLREELRDASRMLPYSTKPLDVLNYLCQNSLISLYPNTVVALRILLTLPVS
VASGERSFSKLKLIKNYLRSSIG
>hAT7_SP_tp#DNA/hAT-Tip100 568-2658 Nearly identical to previous entry strPur2_34698_tp [Strongylocentrotus purpuratus]
MVSIRVVTVEGWIKDLDQKREWIEYEESAGRLNCIRCKMCVAHQAKLRSLRNFNQAFINGVTGSALKKDNVVKHSRSEMH
KKAIALSSRPKLTLDAIFKTTPIGKALAGASSEEEKRVSKLFDIAYAIAKEELPFTKYPVFVELEKKHGVPLGNTYTHEA
KCSEFIGVIGDTMKSEMLTALKEAQYFSIMVDGSTDASVKEQELVYVHFVNDKTGEVQSNFFCITDVKHATAQGLKDGLD
EIFADADMSLKGKLVCVCADGAAVNMGVNKGLIALLRKDHEMPWLIGMHCLNHRLELAAKNAFEKTYMDEISEMLLSMYY
VYQKSPKRLRELRTLGEVMEEVVTKPEKAHGTRWLQHKSRALATLLRSYPVIIAHLESMASESSAADGARFRGYLQVLTS
FKFVMHCLLFYVMLQPLAALSCNLQGESVDLMFAMASLESFHTSMQNLESEHEDIEDASELSKFLRDITFQDGKAEVEYK
NVRLINVRSDVFTAFQNSRKIYVKKIRECVDARFSDFNSQLFQAFKVLDTNAWPRDKPSLDQFGHKELNTVFEHFKGLLQ
EVQPESIQMEWNSFKSYWNSSLMDLQSSDVWRAFVKVSTSKYPNLGLLIRVLLAFPISNAKAERGFSTMRRIKTDWRCRL
NARTLDHLMRISIEGPSSTDFNPQCAVKNFFCTPRKPNVQPYLYQGSNKRPYPLDD
>hAT1_SB_tp#DNA/hAT-Tip100 563-3043 via genewise with 34894392_Osa, 1 intron (1469:1557) and 2 frameshifts [Sorghum bicolor]
MSKRTLHDYFSSSSGSGSTQHTNESTNQPKKPREEFSHSNLIADPGKRKPIDYYEPEIRDQVKRAYALSGPTQPREFPFP
RKxMGGQWRSFQNTWFDEFDWLEYSESKDAAYCLYCYLFFNSAKPEKFGSTVFAHQGYVNWKNAKDTFHKHSACKTHVEA
RLKCDDFMNQRTSVGXKIVEVSKEEEKxYEIRLTSSLDVARFLISQGEPFRGDDESSTSLNKGTFREMVDWYKDKVDIVK
DAYDKGSKNCQMXSPDIQKDLAKACAEEVTTVIMDEIRGRKFSVLIDESRDVSIKEQMAVILRFVNDEGKVVERFLGLQH
VQSCTAIALKEALVGMLSSHNLSISMLRGQGYDGASNMRGEFNGVQKLIRDENPYAFYVHCFAHQLQLVVVTVSTSSADI
ADFFNYIPLIVNNVGASCMRKDALLAKHHDVLLEKIExGEIMTGRGLNQESSLARxGDTRWGSHLKTLLRILVMWEAIID
VLEIVKKDSIKPTNNGGALGLIGKMESFGFVFILHLMIELLSMTDILSRALQRKDQDIVEAMHLITDVKDSLQDMRENGW
EPLLKRVKTFCEKNEIEVPDMDKEINVRGTSRRRKQKVTNMHYYHVEIFLVAIDAILTEMNHRFSEISSELLVCMAAFNP
RNSFSNFDVDKLVRLAEIYAEDFDIGDLAVLPNxLRQFVNRARRTPDFLGCTELGKVAEIMVKTKMHTSYKLVYRLIELT
LILPVATASVERIFSAMSIIKTDLRNKMGDEWLNDLMICYTEKEIFRKIDNEKIKKRFQEMKKRRMLLPKKVVVCSIL
>50930919_Osa#DNA/hAT-Tip100 gi|50930919|ref|XP_474987.1| OSJNBa0065B15.7 [Oryza sativa]
MGGSGLSSVDARGRSAREGSGGQQRVVKRGRAGDRSREGRKPVARQPANQEQASDHTFTSHEANNDIIHLHQLISTQPHC
ALVETRKVPKPNSANNACNSCLDDINWEDEIKYDPRLRKQIDEYHHNLRERVQEGLSRNGLMSLEVGLNTNGFHRKERLK
LHVGDVGGSHYQAMKKCDDLLQKRQHIDVAFHSVRETELKLSLKQVRGQGYDGASNMRGEFNGLQSLIMREYSSAYYVHC
FAHQLQLVLVDIVRKHKDVSDFFTKISILLNVVGGSSKRRDLIRDINVKEMSKALGSGQLQTGTRLNQEQCLQRPGDTRW
SSHYKTLKSLVGMFATIVKVLEIVEKDKNDWKIRDQGSNLLEYFQSFDFVFYLHLMLTILTITNSLSLALQRKDQDIVNA
MKCVKSTRLNLDELRREKWEKVLDEVSDFCDNYDIVKLEIEDTYIDPKKRRHKSGITNKHYYQVDCFNDVIDWILQELDN
RFSETSSQLLICSSAFSPRDSFHDFNLENLMSLAKLYPSDFNSGNLRDLSHQLGLYIADVRDDGRFSNIQTIAELSQIMV
ETRKHLCYPLVYQLLKLVLVLPVATATVERCFSAMKNVKTYLRNKIGDEYLSDSLICYVEKEEMKKVTNEAVVRRFMKM
>9293884_Ath#DNA/hAT-Tip100 gi|9293884|dbj|BAB01787.1| Ac-like transposase  (fixed up with 4678201; too many introns) Zaphod-like [Arabidopsis thaliana]
MKICNQQYILALGVRRNRFIWFGVNGDQEPRRRRQTRQSEGPINMEDNVDEKSTEKVMEDDVDRMNENREKRVEASSGYN
DWRNAAQRLKRHETTHRHIISMTHWMEIEVRLQKSKTIDNHMEEAIKKEKKYWRDVLVRIIAVVKTLAEQTKEKVDDPNS
GNVLAFIRMIGGFDLVMKEQIRRANKGEIHCHFLSHKIQNELIELLANETKMMILKKIKDAKYFSVILDSSPDDSRKEQM
TFLIRCVDVSTCSPKIEEFFSTFLHIKDKRGEGLFKTLQDALIDLKLNIDDIRGQGYDNGHNMMGKHKGVQKSEYIVYLQ
LQPTIGKCRETMNCITLKLLSQTRWESRIDSLKPIRYQASKIRDALFYLAEYSDNPRHRSDVESLAESETHGIGGFEFLF
GMVIWYDLLAAVNIVSKSLQFEDMDLEVAISQLGGLVTYLKNYKETGFEKAKVESTQIAIEMKIAPIKPKRLVKKKKPFG
EDVEKIDESKTAKESFRIHYFMNIMDQAIMSIEVRFEQFQEYEKIFGFLFGVKRLKVAEDDELRTSCMKLEASLKHDVHS
DVDGEDLFMELKLLKDVLPKEITKPVEVLDFLKRMDGCYPNTWITYRILLTIPVSIASAERTFPKLKLIKNYLRSTVPQE
RLNGLALISIEQELVKKLDYQKLINEFAGAKARRIMFRHEEKLYFCLFFLLTIFLFNFLKQNKFHIILFCEKILGH
>4584355_Ath#DNA/hAT-Tip100 gi|4584355|gb|AAD25149.1| Ac-like transposase  [Arabidopsis thaliana]
MDVIKENCKRDEKSWYMKKPENPTISEVINSDGNNNQQERADEVDPENKVDNLDEVVQVDENEFENKQQEQAEVVFEKKK
TTSVYNDWRNLSKRLEEHEGSHDHIICMTRWTELESRLQNKTTIDKYVQQEINKEKIHWREVLVRIIALVKTLAKNNLAF
RGENKKIGEDRNGNFLSFIEMIAEFDVVMREHIRKIGAGEIYSHYLSPKIQNELISMLAQEIRLMIMKTIRASKYFSIIL
DCTPDISHKEQMTILIRCVDISSTPIKVEEFFLKFLEVNDKTGEGLFSTIQEVLIDMELEIDDVRGHGWDIFKEMVKGLT
LKSLSQTRWESHLESVKAIRFQTPEIRDALLYLAEKTDDPKTRKAMDIEAEFPVKKKKIIRRKKHFDHGNMKLSTEEDFR
INYFLTLIDQALISLESRFEQFQRYEQTFGFLFDLQKLTYANDENLMASCVNLESSLKHGEHSDIDGADLFMELKVLREV
LPNEVTKPIKVLDFLKRVEGCYPNTWISFRILLTILVSVASAERSFSKLKLIKNYLRSTMSQDRLNGLAILSIERAMLEK
IDYATVMDDFAGKNASRIIFTQ
>32766289_Dre#DNA/hAT-Tip100 gi|32766289|gb|AAH54900.1| LOC402835 protein [Danio rerio]
MPDCCAAANCKQSTDQSSVSFFEFPLDPDRCRQWVGRCNRPDLQTKTPEDLHKNYKVCSRHFETSMICQQSAVKCILKDD
AVPTLFNFSTNQDNAQTSKRKRTREKTGEEPVVPKKTKGTTDDPNLSATEMEVKVEGVSAEISEIQNPPAHDETEKEDPA
ISKAKEILKEYFKETLAFTGFSINNKASLNPGGTLSVNTMCSEKIDQKEVLTLGEEVMREEIRNSLRLARFFSILLEDKT
NIDGVDQIPVFIRSVTSGGYPQKHLLAFLPCDVDSESLFHMLISEIRNKWGLRLEHCRGFTYLSSGVMCQKLKDFTCRML
RDFPQVVLSPSEPYAFNVWLIRSMPILPIQEVVDTVEQVANVIRQSETLAKKLDAKITTLYGHIKGEVDRVKDSYQNRWE
YATDAFQTMLDILEPLLSSIGEMCTSALSDVDAETVEALLKLKEKLKNFNFIITLVVLKNTLCCVSILNPSLRGIISISS
TLQYTISNALKLLTKHMQEIPIFHRKWFSDALGRAKKLGVPVNLPADMVTNGESAENPQAALEDYYREALSKKVLQYLID
EVKRVLGTEMARILRWLSLVPSYMADHNFSIRKDKVADANLNNLARPDSFYDELGCWEVKWRHASKRRILPTSVFATLKI
PDIGFYPNIQSLLRVLGTIPCVHAEADVYGQYDMVLNRYHSYMKEVTAEKRLSSMAFVYVNQDVNFSFEEMVEAYVKKKK
K
>34913520_Osa#DNA/hAT-Tip100 gi|34913520|ref|NP_918107.1| OJ1029_F04.11 [Oryza sativa]
MHLGREKRKKRKRVDDLIESQMGAMDKFLRDNMGMTRNLDELAIVVVDEASDMIIEDKGPISTEEINMNEDGTNVSDHEN
IFNSPATESACVDEQLVFTTDIYDRRNWDKLDNKARGKIFSIIIDSTPNVSHQEQMTLLVRCVNMSYGKIKLEEYFMGFL
KVDDTSDSELFNVLVDSIKSFGLSIDDIRGQGYDNGSNMKGK
>34894392_Osa#DNA/hAT-Tip100 gi|34894392|ref|NP_908521.1| putative transposable element Tip100 protein  Tip100-like [Oryza sativa]
MSKRTLLTYYSSSSNTDPSPSTENLSQPKRPRAEFSQSDIIGDPGLRKPIEAYPPEIRDQVKRAYALSGPTQPNITIFPR
KWQGGEWRSFQKTWFNEFDWLEYSVSKDAAYCLYCYIFFEPGKPEKFGSAVFAKEGYVNWKKGKDRLTVHSNCKTHNDAR
NKCEDFMNQRTSVSKKIEIVSKEEEIRYKIRLTSSLDVVRFLIEQGDAFRGHDESDTSLSKGKFKEMVDWYKDKVPEVKD
AYEKGLKNCQMVSHHIQKDLTKACAEKVTAVIMDEIGNRNFSVLIDESRDVSIKEQMGVILRFVNDEGKVMERFLGLQHI
ERCTAIALKEALFGMISSHKLTISKIRGQGYDGASNMRGEFNGVQKLIRDENPYAFYVHCFAHQLQLVVVAVSTSTPAIA
DFFNYVPLIVNTVGASCMRKDALLAKHHDVLLEKVENGEITTGRGLNQESSLARPGDTRWGSHLKTLLRILVMWEAIIDV
LEIVKKDSTKPTFNGGAFGLMGKMQSFDFVFIMHLMIDMLSITDDLSRALQRKDQDIVEAMSLLIDVKELLQDMRENGWE
PLLNRVISFCNKHEIKVPKMDKEVNERGTSTHRRHKVTNKHYYHVEIYLAAIDAILVEMNHRFSEVSSELLVCMSSLNPR
NSFSNFDVDKLVRLAEIYAEDFLVGDLMLLRTQLGNFISNVRRSKEFLGCKDLAKVAELMVQTGKNRTYHLVYRLIELSL
ILPVATASVERVFSAMSLIKIDLRNKMGDEWLNDLMICYTEKQIFRSISDEKIIQHFEEMKKRRMLVLQQKLVVCSMPPF
SP
>hAT-3_SBi_tp#DNA/hAT-Ac Very close to the fragmentary TIGR entry ZRSiTERTOOT00130 in Zea mays  920-3133  [Sorghum bicolor]
MRDLPGTEEDDDMRDEELEELFGLGPEARAGGGAEDPVNLADGEDEEQGGENNADEVSRPSTSDVWLDFKKLFKPGPKGK
QIRYGAVCIHCNTQYAGRSAIGTGHLRRHRDKCPKRREKIRGYSQSQISFNPDGSMRNWDYCPARARTELCRLLARVDVP
ISFGESAAFEEYIKNAHNPKFVAVSTQTTTRDLAKLFTERKAKLIELLSSDAVNCVCLTSDIWSGKAKEDYLSVVAHYIN
PDWQIEKRVLGLVLIDCKHSGQNIADRVASVLSEYGVLQKVFSVTLDNASSNCSAMLKLRPILSHYLGIQVPSEDPNESA
LNDSAISSIFLHQRCACHIINLIVKEALDVLKPLIEVFRXAISFMNSSNVRIAAYKRLCIASGLRPRKFQLDMDVRWNST
YLMLKHLFPHKEPFTTFIHANYPRTEDGLLLTEEHWXVAXKVLKFLELFYDATVALSGVYYPTSPLMIHYLVRIAIHLQH
YANDSHIRPVVQPMIDKYNKYWRDIPLLYSFAFILDPRAKMRGFAKVLRRLMNLTSTDYNAYQVGTRARLTDVYNKYEEK
FGDVRLRRTVPQNLSGKKRSAWDEIYDDDSGSSGGGSSLLHSSLNLSRDTSATALLHAATSTAAASSSELVSYLDCDTVN
QLHDEFDILRWWHEHKLTYPVLSIMAKDILTVPVSTISSESTFSMTGRIIEERRRRLKSETVEWLTCIKDWELAEARLQH
NVEDKELEDEFENLYLD
>HAT-2_SD_tp#DNA/hAT-Ac 757-3288 via tfasty with TWIFBIG_tp, 3 stopcodons. (there may be a small intron from 1324-ca.1470 to bridge the stopcodons) [Solanum demissum]
MDFGKNIIEKGKTTIVNSFTNLSSSKSKKNKKTDSTSQSKTKKTSQLRINTDDYTHVDETVFNIDSNSGLDPYHEHLQRR
FGNFEEELPEDDEHDDVNAYVDSFDNNVDEYDDDETEPPSATSPTPNPSSPAPAPFRCPAPTPPVHPRTKVERAKKSVVW
QFMTQNEDKTQAICNKCKHRMNHKTVGKQGGMRHLSNHLMSCCKNEFFACxSCSRSxKNGTTLPENVxVDDSNMVQTQLN
PSNVSGSSIQRSYSREKDLEELAKMIVVMGLPFSFAENPGFIHYIQIVYNPHFKGFTRNTIKKAIFDYQAQHFQYLRCLF
YYNNCKIAITSDMGRSVNGNDYFTITAHWIDENWTLQKRILGYKCCEMHKTGSYIAQTIIDVLQNYGICDKISSVTLDNA
SNNSNAVEILKPSLCPIYIDGFHIRCAAHIYNLIVRDGIAIYDDGCTKVETACHFIFKCQIKSRRRDFENRCREFNLPPR
KIPKLVCTRWNSLFEMLEVAYEYRKPLQMVWNAHNSNMTYRLDNNDWNDIKELIEFLKVFYLTTKKISALYYPTICSVLP
NICAISTKFYKFKNKPRFEQSVKKMIEKFKKYFIPIPQIYLTACLLNPHYKDEGASRMVDKIYFNLGIDSEDDETPSCQD
VKDSIKIEARKLYDLYNSNIRNVVHNEEPQSSRSRYNNEDDIDDMIDCIIELSHNDRNDFDAYINQNTEPTTIDLLEWWS
NRGKGFPKLQPVARDVLAIQASSVASEGAFSAARFQIGEHRYSLAADSLEISVLFRDWINGERRSYGRPPLPTKFENDID
EIMLDFSDDGIDAMEELANQPILEHVTREMLNDLKKDFLGSMNY
>hAT-4_AMi_tp#DNA/hAT-Ac 1223-3756 via tfasty with hAT-2_Crp_tp, 1 frameshift. Includes old hAT-3_Crp.[Crocodylidae]
MKRAGKAGARSSGRGGRGGRGRARAAMSPPPKHRRILFPSSHDASAASGSKEVGAVSAPDVPAPAPPPLSPEIGTSSGIT
VSSTPMSSPSVSLPLPEEELELEPGVLSALAQAILGTEGESEFVLHTPQSSPRPRSPPESSTSEEVEVEVVEASGSAEAA
PPAVVPQPAEEWDKAGSPPSTQKRASSVVWEHFELADDPRFAICQHCRRHISRGKDVKHFSTTAMLLHLRRQHPLALLAA
QPGTSASVPKGKSPARSKAPFPPKQRQATLEQWGKAADRGGRVAKASEITQTIGEMLALDSQPFSLVERPGFRRLIALLA
PSYKVPARTTFSRTVVPSLYEACREYLREELRKAGPQVALHFTSDIWSSRGGDHAYLSLTGHWCDQSGRRWALLQAEVLD
ESHTAREIMGAMNRMVQGWLVGQAELTRGFMVTDNGANMVKAVHDANFVGIRCVAHRLHLIVRDALEGDRAAGDGAATTT
ATSQLISKCRKVAGYFHRSIKGGKMLREKQAELSIPQHKIMQDVETRWNSTYLMLERLVEQQKAIHEMALLGEIGISGPL
NRAEWGTISQILVVLKPFLEATETLSAGDALLSQVIPVVRELENQMEKFQGINVPGWGRPLSPDVQALVRRLKEGIRRRL
DPLRSSTVHMMAGMCDPRVKGSMCTGSTKTLDHWTQVLVNKVREAEVQRRGDVEEGDPLSRASTPSTTSTGTSTSQSPPR
QPLPMWAMGMASMLGSKRTRPQPRAGSAEASVATYLAEDVEPLDCDPLAYWASRSQMWQDLATVARQHLSCPPTSVPSER
VFSIAGDVVTPHRTCLDPALVEQLVFLKVNLPLLGFPKLHLQTD
>HAT-70_HM#DNA/hAT-Ac 733-3354 GENSCAN_predicted_peptide (3 introns)  [Hydra magnipapillata]
MPIKATILWNYFNKVTVSGVKCGECKKCQIQIKLTDGSTSGIRYHLKTKHPTDYATMLRAQIELERQREEDIKEITEAAF
ELNDAYNQRSQKGLSKCVNGGTIGKYSSQSGRQLETDMVIMSYIARSSSPFTLVDEPCFKEMVEHLNPKVIVKHSSTFSR
YKLPLLYESVMDTVQNLIEKEVSTCQQVAITTDGWTSRSQDPYMTLTLHYINSQFELKKYVLNFDNFVGRHTGYHISKAL
EEMIQKYPVLDAVPKKVIVHDAAANMKHAVSIMNKTKYESLLCADHLLNTSLLHATNEVQEVKECIDIATQLSSKVHRST
LACQLIEKECMLLRVNYVKIIAPVKTRWNSNCFMLESILKLKDVLISLREKDALNNNPLQNVIPSDNQFSLMASLMPVLK
KMKIMSDCMSKDTEPVLHHMLTMLYKTDNFLHDHIDMENREIVNAFCKKLRYMLRHYGIFEEFTRKVINDHPSSDAVSIS
EKNNHKATQVKMPVGVDECDDLQNIEIEQGNNNHTISQNVPEIEREFESFHAMPRVE
>HAT-13_Mad_tp#DNA/hAT-Ac 635-2862 via genewise with CRATA_tp, 1 intron (1465:1565) [Malus x domestica]
MLIDSVSVLYHVFVYILMDLVVFAAIKMSKRKFKSQEETISTPTDCNLAPTLNPSVVQQEIPNQIARPQDIPTPNEVAGE
IEEPGGDDGEGNNSRLRSLVWQHYTRTVVDGVMKAICNYCNKKLGGNTGNGTSHLRHHVTICPRRRQKKLKQTLTQKVGD
GKVELYTFDQESARRALAQMIILHEYPLSMVEHVGFRNFMSVVQPLFKVVSRNTIKSDIxKIYDYERSKTMQLLDENKSR
IAITTDMWTASNQNRGFMVITSHFIDDSWTLQSRIIRFIYVPCPHTAETLSDVLMECLLDWNLDRKLSTLTVDNCTTNDK
MIDLILEKLSGSSLLLGGGFFHMRCCAHILNLIVKDGLEVIGGGVEKIRDSVVYWTATQKREEKFEEAARQLKLPGTKKM
VLDCKTRWNSTFLMIQSALIYKDVFPRLKQRESQYKCLPDDRDWEMAREICEKLKLFYNVSELFSGTKYPTTNLYFPKIC
EIRLSLTRWLTSRRDEIKNMARSMIEKFDKYWSVIHGIMVVATVLDPRFKMRLIEYFFPLMYGQYASNEIDKIRKYCYDL
VKECGSNHISNMGHQPSFTSSxLNQSDFEEMNPLMDNFDLFVSSTVSTDNVKSELDHYLDEAVLPRTSDFDILGWWKSNG
TKYPILSALARDILAIPVSTVASESAFSTSGRFVSPHRSRLHPKTLEALMCAQNWLWKEIQGTPKYxFI
>hAT-2_GM_tp#DNA/hAT-Ac 2845-5134 via genewise with HAT-6_VV_tp, 1 introns (3717:3777), 1 frameshift and 2 stopcodons.  [Glycine max]
MAENMQTEEPSSHQPTPQSSDHPTPLSSHQPTPVESSTGTAEGPNNEPMQQPPSMEVDDHGVSSTKTGGGRLKSIVWNHF
DKIKTVDGQDKAQCKYCKKLLGGASKNGTKHLHAHMEKCIQKRLHDKGKGQTFLIPKVTQGRQELTAGGYNEENARKDLA
CAIIMHEYPLSIVNHVGFRRFLATLQPQFQCPSRNTIKKEIFNVYDFEKSIVMKLLDTNEGRVAITSDMWTASNQKKGYM
AVTAHYIDSSWTLQSRILRYXNILNFIASQYIVLDXFFIIFCVRYFCVDILFIYVPSPHTSERLCNALVECLLDWNIDTK
LSTITLDNCSTNDCMIEKIKDKLQLGTLIKEGAFLHMRCCAHILNLIVKDGLGVVKDGVEKIRDSVAYWIATPKRLEKFQ
ETAKQLRIPCTKKLSLDCPTRWNSTYKMLDVAISYKDVFSRLKQRETQYSCFPSDSQWEFAKEVCKRLAIFNDITEMISG
TKYPTANIYFPQICEIKMALSEWVNSPNEVIQKMAEKMLQKFDSYWSVIHVIMGVATVLDPRYKMELLEFYFESIYPIDF
FSQVNRIRNLCYDLVSEYQAKKHQDSTSSFESPDVVSDGKSKLCDYDRYIERKKRARTSTMKTELDHYLEEEVLPRSSDF
DILMWWKLNELKYPTLQAIARDVLAIPISTVASESAFSIGGQILTPHRSRLHYTTLEALMCSKSWLWNSENAGKILNAYV
ILYELLIFLKLITCYLLFYNYYL
>Furousha1_tp#DNA/hAT-Ac 530-2056 [Takifugu]
MLRHLRARHDDNHDPVNTGNPDSKLNIYVYILYICMCVSIYCRCCVSYSYSNHSPTVSRKQKLDEALVDMIVKDGQPFSI
VEDEGFQNFIKILDPSYSIPSRKTVKAMVEARYTVAKEKALAEIKQTSAVGLTADMWTSVNMDAYLGVTCHYVSDSLDLA
TVLLGVQYFPLAHTAANISDAIANLMTEWGITEKVCGMVTDGAHNIVASVTQLNVRHIYCFAHMLNLVVKKSLCQTSELE
NMRSRARKMVAHFKSSSKAKEKLCSIQANMGMPQKKLVQEVETRWNSTYAMLHRLYEQREPLGAALASLSTDLVPFTADD
YAAINHCLTVLRPFYQATVELSEERRVSGSKAIPLAKMLRHVISAECAQMAPCIGATLANHLKNNLNEKFSGLEKVNSLS
VATILDPRFKQAGFTNQSNAQAAVERLTRECASLIDGSAEDVPLETATTSAGASEQNHNLWALLDNYVESQHCTSSASAS
TAVEIQRYAC
>54644095_Dps#DNA/hAT-Ac gi|54644095|gb|EAL32837.1| GA12516-PA [Drosophila pseudoobscura]
KKSNVWQFFYKANDTVATCCLCNRNYSRKGRGTTCLRNHLKSKHPVEFQTLAEDIRCLVKREVTYRLPQHPTSQLELKLH
KIAPDPLEMDNEDQLFARCDEHLAQMFLNHSFDLIEGPGFINFVKVLHSGYVIKARGYYENILCRDIHNRLHVQVKQQVD
LLGAISLSTSLWWANNDGLLSLSCFGVTSDFKAQRLTLKCEALSYEDTDRVAYCIQGLISGLDMGLSREKVHCIIRDEAT
ALAGALPDCSVSRLQMCVRFALQENQQLQNLYSKCKQIVEHFASSTMAQEQLKFIQEIRLKQEPCSIIAESPLRWNSIFD
IMGRVLKMKDALSLYAEENSLVQIYPDEWLDIDLCKKVMQPCEEIIKMWSDSSTTASSVIPLVAALRDSLRTDVHNFVSS
VTICSFARKLLEELEMKFSHITTDIKYLVATYLDPRYKQAFFNDREEQLVTNEVLQQLTSIQGNDEGQPSLQKVKISSSQ
IKNESKIDTILDNILASGSAHNQTATTSFSSQSQFKNLLYLYNSEPRIERSMDPLIWWKTNIKYSPLYRIVRQFLSAPAA
SASNEALFGESAHLYSDMQGHLSPESVSKILFIKSNSKVSDNRV
>HAT3_MT_tp#DNA/hAT-Ac 1010-3259 (1 intron) [Medicago truncatula]
MSSQANEEPTQAGANTTQAEANATQEEETQAEPIVGRKRKKTSVIWKDFDEKEITKGVFRAVCKHCKAQYTTGTVGSSTS
QMKRHLVSCTAKKLQDATEKRQAAIPFKRVSSGNPFLTSGVGYSNERMREIIATAVMVHEYPFNVVEDDVWMWAFEYANP
EFRKVTHKTTRSDCLKLFENEKKILKKQLESVSKISLTTDMWKSSHQVVEYMVITGHFIDAGWNLQKRVLSFVKVPAPRR
GIDVADAIHKCLKTWRIESKIFTVSVDNAAYNDLCLKYLKDNISMSRKLILNGDLFHVRCCAHILNLLVQDGLSKIKDII
FNIRESVKYVNHNDARLKNFCDVVEQKGLKERKLVIDCPTRWNSTFNMASTALKFKIVFSAYKEREPHYDHAPSFEEWDK
VEKVCKLLEVFNSATHVISGSFSTILSFNITILNVGSEYPTANLYLPEVWRVKQVLDMADEDEDLFMREMAKPMKKKFDK
YWGESNLLMAIASVLDPRCKFHSVCICFPKIYKSKEVSDENIEKVRRSLELLYDEYVALSLEESYLMPAVNLDNSSSSQT
NVKNATGIDDLLQTIREQQAISPTKSELQDYLDQGVHVVPNSESFSALEWWRNNSMKYKILSKMAADILAIPISTVASES
TFSAGGRVIDEFRSRLNEESVEALICGGDWFRHKYGVKNKSKVILCHDILLIFIHIFIWYCLVQ
>hAT-2_AP_tp#DNA/hAT-Ac 691-2341 via tfasty with HAT-1_DP_tp, 2 frameshifts and 1 stopcodon. [Acyrthosiphon pisum]
MDQNPIRQQSTSVATTSTAFLRPHNKQQSSIANFIHKPIPMSKSKMIDQQLIKMIVKEYHPFSVVEDEEFRKFIKMLCPT
YIIPSRKTVTQSLLPQMFDMTLECVKDRLKNVEAVCLTTDGWTSRTNQSFISVTAHFIDPKNDTVVSSVLLGCIEFNxKH
TSENLSRFLRNLVEERNLLYKLTAVVTDNAANIKSAIRNCNWRRLSCFAHSINLIVQSSLKCIDSTLSKVKNIVQYFKKS
SHALAKLNDYQKQLGSPILKLKQDCPTRWNSTNDMINRIIAIKDSIIATLAVLGNSELNCLSPQDWVILENARDILKIFY
EVTVEISAEKYVTISKEIIFIKTLNKFVFNFNNNNTLPKEINSMCQVLKDELYARFGKYEENPLISEATLLDPRFKKFAH
SSNENHCKNAVNLLKAKAQSIILESDEPIHQQVATSTSASNSSSMLWKEFDETVVNLIGGSNSSVAGIIEVEKYLNEPLI
NRAENPLVWWAERKNVYPRLYRLTKRRLCIMATSVPCERIFSKAGQVVNERRSRLTTSKISQILFLNHNML
>HAT-1_NV#DNA/hAT-Ac 413-2711 2 introns, 4 stopcodons, 2 shifts (pretty bad sequence) [Nematostella vectensis]
MLSAKKELLSAGLAEKMDELRDFVPKKQSRSIVWDYFGFEINDTAQDKVMCKKCFAVVATSRGNTSNLIAHLRNHHPDLY
EEFNTKNSKKSQNKRQGDIPKAPSQKKQVQCTIQESIQAVTPYEKSSLRYKAITKAITWFLAKDMVPIYTVEKPGFKALI
STLDKRYILPSSTYVYNTAIPDLYRECRRSVELQLIQEVEYFAITTDLWSSRTTxPYLSVTIHYIQEFDLKSKCLETIYL
PDSHKGENIASGLCDVLMTWSLKEEFLVALTTDNASNMVKAAELNSRSRLQCFGHRLHLAIENSVRNDRRIDRATGQCKK
IVSHFSHSWKKKEALKTVQQDLHLKQRSLITECPTRWGSRQAMIERILEQQNAVSKVLGTDKGTRHIVPTWQDIEVLESI
NTELAPLKEFTDAMSRESYVSVSSVKPVLELLRTVTLASAPEDTEQPKAxKTEVLQYLQDKYATQDLLDMASFLDPRYKA
TYVPADDLDDLKKKVLAELDELMDKVCNSTLTWIESIFTLCFVGERKSSWCSSGCRFFRISSGAxGEKRKTLGSLLKATV
PSPSDIQPKSSSEMEMYMTLPTLDTEEDPLSWWKMNKNLFPKLSKLARKYLCIPATSxPSERVFSASGNVVTYTRACLKP
EKVNMLVFLSKNL
>TEMPINDAS-1_SB_tp#DNA/hAT-Ac 1131-3215 [Sorghum bicolor]
MNADISVSVPTDDDADDDASQVEVGDDVSVPSNPSKATRGRKGKRAGIHLSPSKTKVKRGKRAGCWKYFKEINVQSEKEF
GVMVTKAKCRFCHKSYAYQQGGATSQLNRHLAKCTQFQNKLAKAKRQLAQGTLNYVADDGCLVVNPTEYDHEHTRKLIAK
MIIVHEYSFRMVEHKWFNILMKWMNSNYECIGRKTIKNECMKVYESEKEQLKKSLREAESISLTTDLWTSNQNVQYMCLV
AHYIDSDWVLQCRVLNFVELDPPHTGLVIAHAVFECLVEWKIEDKVMSITLDNASNNDVATTNLSAKLLARKNGQFDPKY
FHVRCAAHIVNLVVNDGLEPIEGLISDLRNTVKYFKRSPSRLYKFVEVCNDYAIKVGKCLSLDVKTRWNSTYKMLNTCIE
YRSAFGYYAQVDQNYAWKPTDSQWDMYEKIRPILGEMAGATTAFSGSVYPTANVFYPYILKVKLALLKAKNEEDPYLKNM
GAAMLDKFDKYWEEKNNVMVIATILDPRFKMRYIEFYFRELYGSSRCEQEVADIKKELEELYEKHELEQRRKMGGSSSSS
TTQSASSSKETTSSVACLVSSEFQSFLESSASETSKSELLIYLDEANHPLHDKNFNLLHYWKVNAPRFPVVSSMAKKFLA
VPASSVSSESTFSCGGRILDDYRSSLKPATVQALVCASSWIRGSKSPPIILVCDV
>HAT1-1_NV_tp#DNA/hAT-hAT1 161-2158 [Nematostella vectensis]
MSSKAAICIHFRQRSRGGWGICLIGQRLPSRTRSFSSVLLVTRSKMASFTSNTGSQPSKAEIARERTLPSISGKNKTRGN
CDVKNISIHDRIQQYPGEELTIKDGKLFCLACREIVSSKKSILTTHLASKKHGNGKEKLKKSKLKDQTIMEAFRAADMTQ
KDSTLPISERAYRLEVVEEFLKAGIPLGKIDKLRSLLEKNGQRLTASAHLGQYISIVLKQEVERIKNELTLPGQTGMTRD
VSMIFDGSTRQGEAIAVILRFLDENWSIIQRLVKIDICSKSVNADDLAQVLNQCLSVDYGVKANSLLAAMRDGASVNQAA
LDRIAFIFPKLLNVVCFSHTLDNVGNHLVIPTLLEFGSVWLRLFRHSYKAKLLWKDLTGQRPRSYSETRWWSKWEVYKQM
LLQFGDIEGFLIEAEAANIGPQLLPQLQAILSDPERVINLKLELAITIDVGEHFVKATYFLEGDGPLVFSCYEKLHAVAQ
ACQAPHFPNVRAVAAAIAEENPAQNVAALEQQAKACVQPAIDWFLRKFNVQLYNTVLAFKAARYMCPVSVQWLKPTQHSV
EALRIFPFLNDDCIINGLKAELPAYLAATADVVINTEERKVKWWHDHKEQLPHWASAVKKVLLVQPSSAAAERVFSVLNS
AFNDQQEHALVDYLQASVMTQYNKR
>hAT-46_SM#DNA/hAT-Charlie 492-2294  [Schmidtea mediterranea]
MSDKKKRKLKDENRQFNNNWENDYFFIQVKNNAVCLVCRETITAKTYNIRRHYEKHTELSVLSGDERKAKLYLLKANLKS
QQNVFQKQNQQSNDIVSTSLKISQIIAKKLKPFSDGEYIKECLIAAAEEISPEKVHIYKQVSLSHQTVARRVDDISNEIS
LNLNEHTKQFVYYSLALDETTDIKDTSQLAIFIRGVDNKLKVTEELLDLVSLKDTTTGKDIKDAVLKCAEDRQLDFKKLI
GITTDGAPSMIGKNIGAVSLICKHIESLGQNTSFLDLFICHCFLHIENLCAQSLNMSHVMSVVINIINKIKNNSLRHRQF
QEYLRELESEYCDLIYYAKIRWLSRGKCLLRFWNLREEIRIFMNENGEDVPQLYDERWLLDLCFLIDITTKLNELNQNLQ
GENKLITNCYQDIKTFIAKLKYFQNQLKSNNATHFPHLNDFEMENKPISEYSHNIKDLLEEFEKRFAHLEKFEQMFNIFN
CPFNIDVNSAPDYLQLELIDLQSNSEMKFRFEDINIVDFYGKYIQEDKFPNLKKLAMCIVAANGTTYLCESFFSRLKLAK
TKDRNRLTDANLTNQLRCATTKLEVDIKKISNKINKQVSH
>HAT1-3_NV#DNA/hAT-hAT1  13-1486 (fragment; N terminal 160 AA missing) via tfasty with hAT1-1_NV, 2 frameshifts and 1 stopcodon [Nematostella vectensis]
STLPEEMRLYRYELVEIMLKAGIPLAKVDVLRPFLEKYGHRLTTRSHLSEFIPLISEKEIDAVKTEMASNGFSVIFDGST
RLGEALAILLRYVDQQYKVQQRLEIEVLARSLNAEQLAQRLIQCISSxGILPNHLLAAMRDGAAVNEAALRQVGFYFPNV
FNVKCFSHTIDNAGKHFEFTVLETFSRYWNTMYSHSPAARLAWKTRTGTSMKLRSETRWWSNYEVLDLVTQYYGDVEPFL
RENHLSPMCRAKLLEVFDDPEATRDLEMELVALADAGKHFVSATYYLEGDGPLVFSCYERLSTVAHAIAIEAYRNVEAKA
KQHANDDPGIYNELVAKAKACIAPGFQYFQRKFSVEFRSTVRAFKAARLCCPVKVQELHPNAASVEELQEFGFFSNDEVA
SLVEELPSYLAAADGVVCTTEEEKVSWWADHVDTLPNWSAATKKILLIQPSSAAAERVFSLLQNAFSRQQDSALEETLEV
SVMLRYNDNKRV
>hAT-4D_AP_tp#DNA/hAT-hATm 609-2952 via genewise with HAT-7_SM, 1 intron (1174:1234) hAT-4_AP very similar, but of poorer quality. [Acyrthosiphon pisum]
MASTSTSNIILREQDKIFLIGSTCNQIIGSKLPSKRQALRVLFFNMRKVKLNLHESAKLVIQEIVVFWQKARIPIRQEYN
NIKELESLYEEWRTLQKHATRKTEINKKKQECFVNELDDLFDIAHMNALDIIKIEVDRQFLLSQREKGRIGCMLGKDKNL
QKTEERVITRLEAVTKRKKRAYGEIEQARRTVDSEIICSTSSDSDSDTGENISNKSLDIGNTSEFLDLHTFQSRGKKNFI
TPKLAIALDRCKISDRDAVHILTATVEAFGIHVKDLILNRTSINRIRQRLRKDRADQLRKEFNTSEVGPVVVHWDGKLLP
DLTGKELVDRLPVIVSYKNSEKLLSVPNLISGTGQNQAEAVFQALEEWGLIDHVQALCCDTTASNTGRLKGACIILEQLL
ERDILYFPCRHHIYEIILRSAFEVNFVVTSGPDIQIFKRFQQFWPKVNINNYNTGLEDIIVSEKLNDITNVMLLFYMDQL
RKPHNRDDYRELLELAVIFLGGTPTRGISFKYPGAMHHARWMSKAIYSLKIFIFRKQFKLKKNEEDSIRSICIFLIRLYI
KAWFCAPIASLAPFQDLQFLKSLVDYENIHKKISQSTLKKLCGHLWYLAPETVALAFFDTNLTIETKIKMVDSIKLNNLT
SEINKRIIVSPNEVTQIMKKEIYDFIYVESTSFFSRFGISTSFLEQHPSMWDENVDFQKGLEIVNTFRVTNDTAERGVKL
MEEYNKVLTKNEEQKQYVLQVVEDYRRKYPNSLKTTVLNPF
>HAT5-1_NV#DNA/hAT-hAT5 415-4083 |GENSCAN_predicted_peptide (two introns; forced intron 599-1630) [Nematostella vectensis]
MAGKCKFQDKWLLDPEFSKWIGRGSNDTEAKCKFCMKTFGIQNMGVSALRSHMKSKKHQNADAKNQETSKRQEVLESYCS
ANDVLRAEVIWSIKVVMSHYSYKSCEDISTLFKLMFPDSTVADKFSCGEKKCAYMACFGIAEFFKRELQGRIQKLDEFVV
LFDESHNKTTQSKQMDIHVRYWDDLSSSVTTRYVTSLFMGHATAEDMLRVMTDGLKSNDIDFLKISQLSMDGPDVNWKFL
YLLEEKRLEADEDAPLLINVGSCGLHVVHNAFKTGAKASQWNIEELLSSIYWLFVDSPARQEDFVEITGSSTYPLKFCKH
RWLENVPVAVRAQEIWDNIKTYVQAVLSQKKFTTPTSKSFKIVRDATKDILVPAKMAAFESVASQLQPFFTAFQSDNPIL
PFLVSRLQKVIQSLMKRFIKPDVLQQANSPIKLAKFDLSNKENYLDAKKVDVGFVAQAKIRKLLLDKKVSELQAFQFRNE
FRDFMKSVVSKLLEKTPIAYSVARNLAFLDPVQIVEDKEGSISKFKVVLKKMVEYKRVQMRDCDALVHQYTDFADKAVLA
QKEVFLKFNFVEDRLDTFLAQHIASQSSLAKLWKLVKVLLVLSHGQATVERGFSVNRQVMVENLQERSFTAQRVIHDHIT
HIGGLKKLEVSKQLLDAASQGRRRYVEYLDEQRKAQAKTIQENRKRKCKEREEDLEKKRMRLSCEIASLQFDADKFANEA
EEKAQLFLLTKSNALRKCAKEKQKALKDVEDELADLTRKAEI
>HAT-6_SM#DNA/hAT-Charlie 561-2360 via tfasty with Charlie12_GG_tp, 1 stopcodon. [Schmidtea mediterranea]
MNSKKRKVSEENRKYSDHWEENYFFIMQNSKLTCLICRDTIAVFKEYNVKRHHETKHDVYVKSNKELRKIKLAELKSELK
SQQKMFSSSLQLASNIVKASYSVAMLIAKKMKPFSDGEFVKECLAAVIEDVMPDKHKMISSISLSRQTICRRINDISDEI
VVTLRERIQQFKAYSLAFDESTDISDTSQLAVFIRGVNDSFGVTQEMLNLLNLKDTTRGEDVFHAIKKCLSCNSLHLEKL
SGLTTDGAPAMIGKNKGTVKLFMDELEATSVKPSEIFVIHCLIHQQNLCAQVLSMNHVMDVVIKTVNYIRSHALQHRKFK
AYLDELSSEYGDIVYFTKVRWLSRGTCLKRFFELRVEIENFMAEERNPVSNLNDEMWLLDLCFLVDITEKINQLNKELQG
QDNLIIDACNHIKAFQTKLILFESQLRNNNLHHFPLLKEFNSSQTINFAKYADEIRKLSAEFTRRFSELTKYDKTFEIFS
SPFQVDVFTVPEALQMEIINLQCNNELKQVHKTTSKIEFYNTYITAERYPNLRLFAQKIVSAFGSTYVCEAFFxKMKFNK
SKFRASLTDENLESQLRCATTKIDVDLKTLSDRKEKQISH
>Charlie10_tp#DNA/hAT-Charlie 431-2395 [Eutheria]
IREVKFVLFIFNPNLQMAKQASLDFFVKKRHAFSECSSSSKPNDDDGSDSEEXKTKRVCTSFTRKYDPSYTEFGFVAIID
GEVLKPQCVICGDVLANEAMKPSKLKRHLHTKHKEISSKPKEFFERKSXELKSRQKQMFNISHINISALRASYKAALRVA
KTKTPYTIAETLVKDCIKDVCLEMLGESAAKKVAQVPLSNDTIARCIQELANDMEDQLIEQIKLAKYFSLQLDECTDIAN
MAILLVYVRFEHDGNMKEEFFFSASLPTNTTSSELYKTMKDYIVNKCGLEFKFCVGVCSDGTAAMTGKHSGVVTQIKELA
PECKPTHCFLHRESLATKKISAELNSVLSDIVKIVNYVKANALNLRLFSLLCDNMEADHKQLLLHAEVRWLSRGKVLSRM
FELRNKLLVFLQDKKPVWSQLFKDVNWTARLAYLSDIFGIFNDLNTSMQGKNATCFSMADKIEGQKQKLEAWKNRVSTDC
YDMFHNLTTIINEVGDDLDIAHLQKVITEXLXNLIERFEFYFPSKEDPHIGNSWIRNPFLSLKDNLNLTITLQDKLLELA
TDEGLKMNFENTASLASFWIKVKNEYPELAEIALKSLLPFPSTYLCETGFSTMNVIKTKHRNSLDIHYPLQVALSSIQPR
LDKLTSKKQAHLSH
>Charlie1_tp#DNA/hAT-Charlie 553-2541 [Eutheria]
MDRWLXKGRLEDLLSQPTAAPSTSKDAEKDETDISESSLTHGREESTPKKLGETVNKKRKYDESYLSLGFIDVNNLPYCV
LCNRTFSNSIMVPVKLRHHFETNHSEFKEKGIEYFKRRRDELFKSQKLFVTAFQTRNEKATEASYRVSYHIALAGEAHTI
AERLIKPCTVDIAECLLDEKSVKEITALPLSNDTVTRRIKDLAANMKTELISRLQNCTFALQMDESTDVAGLAVLLVFVR
YQHQLIIEEDLLCECLATNTSGAEIFKVLNNFFESHGLSWNNCVDICTDGAKAMVGKTAGALARIKAVAPNCTSSHCILH
RHALAVKKKPVSLKNVLDEAVKIINFIKSRPLSTRLFNILCDEMGSTHKALLLHTEVRWLSRGKALVRLFELRAELAAFF
MEHHFYLKERLTDKLWLFRLGYLADIFSKMNEVSLSLQGKQLTVFVANDKIRAFKRKLEFWKTCIRHRELDSFPILKDFS
DEIGGDINECDFLILYNEMCQHLEDLHNSVNQYFPNDQCMMLQNHAWVKDPFKVQDRPMDFNVTEYEKFIDMVSDSTLQL
TFKKLPLVEFWCSIKEEYPQLSEKAIKILLPFPTTYLCEAGFSSYTSTKTTYRNRLNAEADMRIQLSSIKPDIKEICKNV
KQCHSSH
>Charlie13a_tp#DNA/hAT-Charlie 151-1269 via tfasty with Charlie5_tp, 1 stopcodon (fragment) [Mammalia]
EKFGLNMEKLSSLATDGAPAMKGKKGFNSLFKSKEKVGVPSFHCIIHQESLCCELCKSGSLHDVMEEVIKIVNFLRARAL
NHRQFMGYLEEVEAEYGDLVYFNAVRWLGRGNLLKRFTELLPQIKDFLELKGSERPNLLDPQWLTRLYFLTDVTRHLNTL
NLKLQGKNKSIADLFKEVQVFRLKLDMWIEQMATGDCTHFPLLNCPELNGITDFEELQSYLVEMKSQFQKRFTDFDEYES
CFKFLRLPLECKPQDVSELSSICPISVAQFQEELIELKANYAHQEDTVSLEFWRxVYESQNYPEISGYVAKLWAMFGSTW
LCESTFSFMKLLKSKLRATISDVNLESELRCALTEYTPQFSRIVQSXKXQYSH
>hAT-5B_SM_tp#DNA/hAT-Charlie 578-2525 via tfasty with OposCharlie3_tp, 5 frameshifts and 4 stopcodons. [Schmidtea mediterranea]
MSENKKRKTEASSNRPFQDWWTDKYGMMKSNNXXLCALCXNTVVCRTSSVKXHYETNHKFLLDLKGDSEQKEYIARDVKN
KNVQSNSFTTXXKHIGXHSNTAAASFEVSKXIAKHGKXFSDGEYXKEAXLKCAPHLFEDFENKEKIIQRIKELSIARNTV
KXRXLXMXKNVNXQKINDISPAICISICLDEXTDVTGXARLAIFXRYFAKGEXIVEELISXVSLXTTTKGXDICNAVIXA
FQKXEIDPXKIVSVTTDGAPAMTGRENGFINLFTERVGHPILXFHCIIHQXVLCAKXGLKAFDDILSXVTKLVNFISARA
LNKRKFQKXLNEVNSXYNXLLMYNNVRWLSXGNVLQXFVXCLDEIXXFLNNENIIGQYNELXDVECWTTKLMFFTDXCYH
LNELNIKLQGVXKTIIVMFDLIEAFEAKLQIFXRDIDXNNFKYFPLSKDHLQKFCYSWSLxNxYKFLXPEXxMTXNPxFR
NFAARFKQFKEFEETLKFILYPDTVSFETAKMDQXEWLNLEDLEMQLXEFQSSSIWKQKFVDLRXXLENNEXNXLNEXEY
ENMNNMLLKTWRSLXETFNAXKKLXXAILXIFSSTYSCEXLFSIMNXIKSDVRNRLTDECGEACISLKLSNYDPDIDALS
RNIQQQKSH
>Cheshire_tp#DNA/hAT-Charlie 417-2222 [Eutheria]
MSKQEKKRKVDFECRTFKAQWSMDYFVIELDGKALCLLCNDTIAVLXEYNIHRHYQTKHSSQYSQLTGKQRSEKLENLKR
NISSQQNFFTKIKNENEAATKVSFRVAHLLAKEEKSFTNXELIKSCLIAAGVEMCLEKINLLKTISLLXRTVARRVEDIG
SNINSQLKNKANDFEWFSLALDELTGVTDTAQLFIRGVNAEFEVTEELASMNSLCGXTTGKNILKEVEKTLIQYNLKWNL
LRCVXTDGGKNMCGAEKGLVGQIYKACENVRCLKSMVIYCIIHQQVLCGKYLNLSCXIEPVVSMVNFIRSCGLNHCQFYK
FLSEIEAEYPDLPCYTAVRWLSSAKVLLQFFELRAEIEIFLNEKNRPQPLLSNTEWLWKLAFAADLIMFLNEFNLKLQGK
TALICETYTAVKSFQWQQLXFESQVMSSCFIYFPCCQKLKQEARSPFPHKFAADIFSELKLQFQQYFLDLDASAKEISIF
QNPFNCAIEELPPNLQLEVINLQCNDMLKGKYQEKNXTEFYKCLPSDEYAQLKSYARGLISVFGNTYLREKTFSKMKYVK
SHYRSALTDEHLQSISMIGNTNFEPQLSKMLSPQKEFHSSH
>Rehavkus-1_NVi_p2#DNA/MuLE-NOF 4081-2837 via tfasty with Rehavkus-2_NVi, 5 stopcodons. Severely beaten-up. Remainder of coding region on opposite strand. [Nasonia vitripennis]
LLTLRNNVMYKSIILEVTTFPFNIFHWSMKAIEFARSASKNKEFMFGNIGCFCKPFHFPDGTESKSINLLSFGIRIDNIY
VPICQLSTEESSTAILNRFFDEILVxRSALPIPGKLVLDYRNNYYITPNHVFNGLKSFEEYxTSCLFYLKESQVDLLPKC
LIYTNIRFLIAKICNxNCFSAISLQSVKYFYIYCIVLLSFQTILYDFEEILLKVLVLSFSEFQSDTTHEFFKDPISRIKE
SNIDPLYSKENINIIKDECEKISNSDSVLNKVLDIDYTKCQHILKYIIDIVLRAKQYTATEGMECQRNAYCNEDISKNLI
xCCVEFVLWTRILFKESNNxEKSFGELLKHYKSDFESFLEKESGPLPSVDIYLQKNIDYLETNLESIRNIVNPSKRVVPK
ISDELDYLNLKTEWD
>CR1-7_Gav_pol#LINE/CR1 3-2189[Crocodylidae]
LVRGLRVLDPLGDSDHCLLEFTIQRKVAKASSQVVALDFRRANFNELRRIVGEALKTQRGGEPGVQGEWSLLKETILQAQ
RKVIPRRVKGGRRAYKPPWLTKNIRECLLAKKEAYSQWKGGVITKEDYSAVARGCRGMVRKAKAEMEQGLASRIKDNKKS
FFKYIGSRKKAPGNVGPLQDKTGNLVVTPDDKANIFNNFFASVFLSKDQNCHLPAGPPLGPGGGSPGPRVSEDLVRELLE
GLDVFKSAGPDDLHPRVLKELAGVIASPLARLYEHSWCSGEVPEDWKRANVVPIFKKGRKEDPGNYRPVSLTSILGKLFE
KIILAHIQEGPAGNGMLRGNQHGFISGRSCQTNLVAFYDQVTKSLDAGVAVDIVFLDFRKAFDTVSHPILIRKLGDCGVD
THTVQWVANWLESRTQRVVVDGSFSTWKDVGSGVPQGSVLGPALFNIFISDLDEGVQSTLFKFADDTKMWGDVGTIEGSN
RLQLDLDRLQGWAEENRMGFNTDKCKVMHLGRNNRHHTYRLGNSPLVSTEVEKDLGVIIDSKMNMSRQCGEAARKANCTL
SCIHRCISSRSKEVILPLYAALVRPQLEYCVQFWAPHFKRDVDSIERVQRRATRMIKGQQGRSYEERLRDLNLFSLQKRR
LRGDLVACYKLVRGDQQALGESLFPRAPQGVTRNNGHKLAEGRFKLDIRRRYFTVRAARVWNQLPSEVVQAPTLGVFKRR
LDDHLTGVI
>CR1-6F_AMi_gag#LINE/CR1 389-1450[Crocodylidae]
MVRTRSATRGSALVVPPSRGSSEAATQMEPVGGLVSTCPPFCGSSWVGTPAVGMRSGDSPACPSCDRLQALEGQVAELQA
EVSRLQGIRAAEDEIDMYFRSLQGQESTGETPRAKHPTKRWQQVPVKSGAKVAHTIAVPAQIPLVNRYVALATQEERVEE
HIPRVIEAAPPTSQAVKRQPPRKKRRRVLVIGDSILRGTDGPICRSDPWSRGVCCMPGARIRDVTETIPKIIKPSDYYPL
VVVHVGTNDASKGKTDSIMEDYKAMGHLLKEMGAQVVFSSILPVSGRSRRHEACIGVVNRRLRSWCYEAGFGFLDNDPYF
WAEGMLGWDGLHLSPKGKRIFSSRLADLIRRALN
>CR1-8_CQ_gag#LINE/CR1 308-2278 Translation after collapse of tandem repeat at 1138-1642 [Culex quinquefasciatus]
MTKSSNCDADVCLGKAANRSPRVRCEFCSASLHIKCANLDNTVVKPLRDSAGVCWLCSKCRDPVKRKATSNSNTMDLILQ
RTTSTMKLVGALLDTVQILSQLTRTLCSRPNCSTIRPPVPDLDTVAGGNDPLNFTEIFESAMNGEKRPRSSSLSRQSLSQ
PEKITRVGVSVNQTAASNITVPPVSDSNDHLAVDTEQFCSDPLFDAASKVALEVAALAAEFSAGYSTAPTEQTNPPASPK
ILASQVATAQQAAAAQQLATAQQAASAQQPASAQHVAQQAAAQQALQTAATANAQQTATINLAVASASASTDSTQKWYYV
TRFQPHEKSANIIRYIQSKTNCDPDQIVCNKLVSNNKSNGRPLSFLSFKITVPDSIETIVNTHTFWPXGVTIQPFTENRT
RAIASTKSKS
>CR1-9D_AMi_pol#LINE/CR1 83-3013[Crocodylidae]
SPPAGFKLGSSGEGEDEYGGSHGTPNQETPTRSAQVCSKDPIRQQFKGGPGTATRGIRCIYTNARSMGNKQEDLELLLAS
NNFDLVGLTETWWDSSHDWVVGIEGYRLYRRDRVGKKGGGVALYVKEQYTSSLIKLGSEGGQAETLWVRIQGARGERDLV
VGVYYRPPHQDDELDQEFSKQLEEAVRSRDMVVMGDLNYPDICWEEQSARSNRSRRFLTCIQDLHLTQEVRCPTRGNALL
DLVLATGDDLVGDLRIQGNLGDSDHQMIKFTIQRRAGIIPSRARVLNFKKADFNRLRGLVSRVLGAKNLDALRVQDGWTF
LKETILWAQSESIPWQRKGGKGARKPLWLTRGIQDTLRAKKEAYRKWKQGVASKEEYTSLARTCRESVRKAKATLELRLA
SGIKDNKKSFFRYVGSKKRVRGSIGPIQDGQGGLVTDSRDKAELFNEFFASVFLNGNLDEPSTYITDTNKGNISRPTVSA
DTVKRHLEGLDVFKSPGPEGLHPWVMKELAGVIADPLARIYERSWCSGQVPEDWKRANVVPIFKKGRKEDPGNYRPVSLT
SIPGKILEKIIKEHICGSPLANVMRRGNQHGFLAGRSCLTNLVSFYDKATNCLDAGVEVDVIYLDFKKAFDKVSHTILIN
KLRGFALDDYTVDWVANWLKGRTQRVVVDGSVSTWKDVGSGVPQGSVLGPVLFNIFISDLDEGVGSTLSKFADDTKLWGA
ANTLERRNQIQADLDRLGKWAESNRMQFNKDKCKVLHLGRKNCHHTYRLGGDLLSSTEAEKDLGVTVDSRMNMSRQCDEA
VGRANRTLSCIRRCFTNRSREVILPLYAALVRPQLEYCVQFWMPQFKRDADNLERVQRRATRLIRGLQGRPYEERLRDLN
LFSLSKRRLRGDLVAAYKFIRGEQHEVGDDLFTRAPPGMTRNNGHKLLERRFRLDIRRKFFTVRVARIWNGLPREVVLAP
SLGVFKRRLDRHLAGIT
>CR1-8_Gav_pol#LINE/CR1 153-3069 via tfasty with CR1-9C_AMi_pol, 2 frameshifts. [Crocodylidae]
FKLGSSGDRDVDDRERPGTTNLKPGAGTVQVSTKGPAKHQNGEVARAPIGGLRCLYTNARSMGNKQEELALLLANKEFDL
VGLTETWWDPTHDWAVDIEGYRLYRQDRVGKKGGGVIALYVKEQYTSSVVNLGQEEGQIEVLWVRLQGGRGERDLVVGVY
YRPPHQGDELGLEFSRQLSEAARSKDLVVMGDFNFPDICWEKQAARSAHSRKFLTSLQDLHLSQEVRVPTRGNALLDLVL
ATGDDLVGDLQVQGNLGDSDHLLIGFTIWRKVGKITSRAEVLDFRKANFNKLRRLVREGLTGKSLGEMGVQEGWAFLKGL
ILQAQKRTIPVHIKGGKKAKKPSWWSREIQESLEGKKEAYRLWKQGAATKEEYTCLARACRETVRRAKAEMELRLAAKVK
DNKKSFFKYIGSKKKVQGNLGPLQDELGQLVTDRMAKAELLNDFFASVFLDTNTNTHPIGTLGKPSIDTNPPTVRADLVK
GHLEGLNVFKSTGPDDLHPRVLRELAGVIAEPLAQLFEHSWRSGQVPEDWKRASVVPIFKKGRKEEPGNYRPVSLTSILG
KTFEKIVKDHICGGPAGKMMLRGNQHGFIAGRSCLTNLVSFYDRVTKCLDEGIEVDVIYLDFKKAFDTVSHPILINKLNS
CNVDYYTVRWVENWLMGRTQRVVVDGSVSTWRNVGSGVPQGSVLGPVLFNIFISDLDEGVESTLSKFADDTKLWGEVHKL
DGRERIQADLDRLGKWAEQNRMQFNKDKCHVLHLGRKNHQHSYSLGGTTLSSTTAERDLGVVVDSKMNMSHQCDEVISKA
NRTLSCISRCIANRSREVILPLYAALVRPQLEYCVQFWAPHFGRDVDGLERVQRRATRLVKGLQKKPYVDRLGDLNLFSL
RKRRLRGDLVAAYKLIRGGQQEIGDTMFTRAPVGVTRNNGHKLEESKFRLDIRKKFFTVRVAKIWNKLPREVVLSPSLEV
FKRRLDRHLAGVI
>CR1-6D_AMi_pol#LINE/CR1 1478-4384[Crocodylidae]
LASPGEGAAGRRGDTTRARQVTRARSAQVRNRGPDSLPNRGVARAAMQGLKCLYTNARSMGNKQEELALRIASSNPDIVG
LTETWWDSSHDWAVSIRGYRLYRRDREGRKGGGVALYVKEQYTSSASKMGSEEGQAEVLWVKIQGGRGERDLTVGVYYRP
PNQGEELDREFSGQLAEALKARDVVVMGDLNYPDICWEEQSARSDRSRRFLAEIQDLHLTQEVHSPTRGNALLDLVLATG
DDLVRGLQVLDHLGDSDHRLLEFTIQRRVSRACSKAVALDFKRANFNELRRLVGEALGFSRAGELSAQDEWSFLKETILR
AQGVTIPTRSKGGKSAQKPPWLTKDVRECLVAKKAAYTRWKGGAISKEEYTSTARACRGAVRKAKADIELGLASKIKDNK
KSFFKYIGRMKKAPGNVGPLQDMLGNLVVAPEEKADLFNKFFASIFLCRDRDSPTVIQDGLKGNXXRPRVGEDRVRXLLE
GLDVFKSAGPDALHPRVLRELAGVIAGPLAWLYERSWCSGQVPDDWKMANVVPIFKKGRREDPGNYRPVSLTSILGKLFE
KIIKEHICDGPAAGMMLKGNQHGFIRGRSCQTNLIAFYDQVTKSLDAGVAVDVVFLDFSKAFDTVSHPILIKKLGDCGID
AYTVRWIANWLRGRTQRVVVDRSYSTWRDVGSGVPQGLVLGPALFNFFISDLDDGVKSNLFKFADDTKIWGEVGTLEGRD
RLQQDLDRLQGWANENRMGFNTDKCRVLHLGSRNQQHTYRLGNSLLESTVAERDLGVIIDSKMNMGRQCKDTVSRANRTL
SCIHRCITSRAKEVILPLYATLVRPQLEYCVQFWAPHFRRDVDSIERVQRRATRMIRGQQGRPYEERLWDLNLFSLHKRR
LRGDLVAIYKLTRGDQWGXGETLFPRAPPGITRNNGHKLLESRFRLDIRRHYFTARAARIWNQLPREVVLAPTLGVFKRR
LDDYLAGVI
>CR1-5_AMi_pol#LINE/CR1 469-3390[Crocodylidae]
LRPLGDGQSINSSSPGHVSHITNNLGSPREPVLMTAQGKVPLHPTGKHWASHGRLNCLYTNARSLGNKQEELALLLCEND
YDLVGITETWWDSTYDWSVALEGYTLYRRDRVGKRGGGVALYIKDQFTSLQIEFSNQEGRLETLWVKIRGEHGEGDILVG
VYYRPPHQEEELDREFNRELVEAARSRCMIVMGDFNFPDISWDERTAKSDRSRSFLACIDDLYLTQEVYGPTRGEALLDL
VLAKGEDLVSDLRIEGKLGDSDHELVTFLVHRRAGKPLSKTEVLNFGKADFCKLRDLVSQAIRGHTPLEKGVHEEWSSLK
NIILEAQGKAIPSRKKCSQRARKPPWLNKELLDLIKLKREAYTSWKTGSITKEDYSALARTCRERSRKAKAQTELRLATG
IKDNKKSFFRYVGSRKKNKDSIGPLRDPTGQLTSDAQERANLLNDFFASVFHPPKGITLSERTRTSPGAGGGPKIDVDQV
REHLEKLDIHKSAGPDGMHPRVLKELADIIAPPLAKIFENSWRSGEVPEDWKRANVVPIFKKGRRDDPGNYRPISLTSVP
GKILEKIVKGSINARLTEGKLLNASQHGFVTGRSCLTNLISFYDQVTRALDKGDDVDVIYLDFKKAFDLVPHDVLMAKLG
NCGLDHLTVRWLGNWLRGRTQRVLVDGSKSTWRRVTSGVPQGSVLGPVLFNIFINDLDSGVRCELAKFADDAKLWGRAVT
PQDRLGIQADLDTLSRWADQNLMAFNVEKCKVLHLGRKNPQHTYRLGSATLASTMTERDLGVLIDHKMNMSHQCDAVAGK
ANQTLACIHRCISSKTRDVILPLYSALVRPQLEYCVQFWAPHFRRDVEKLERVQRRATRMIQGLEGRPYEERLRDLGLFS
LEKRRLRGDLVAAYNYIRGVHQDLGEQLFTRAPQGITRSNGHKLQEGRFRLDIRKKFFTVRVSRVWNRLPPEVVQAPTLD
SFKKHLDIFLAGVT
>CR1-4_DAn_gag#LINE/CR1 430-1341  [Drosophila ananassae]
MSLICTAKKCEFGGSITGDSYLSCWLCNNCSHIKCAGGGHNGRISDLITKNIGLTWSCIACREIESEMRTFMKQTRNGFL
DVRKQFAALNEQFLTLETQFLGLKLLSESPRRKIPNNNPMAVNLLGTPASHVIHSDKFLTPNTSSPPIVPVEVIHSPSLP
MESSMSLVPPIVLDPPSLENLQVPVAPSPRPLTGVAPELKSSGLSLRAVAPRKAIFVSRLMPDATVDDVRSHLLKHLKVA
PNDLAVFKFNFKHKRNISSFKIVIPESYFEKALDPSAWPEHSIIHEFLAKDPLNHNFADSAPKN
>CR1-6_Crp_pol#LINE/CR1 1262..4180[Crocodylidae]
PSEEGFKLGSPGDGDQSPEVSGEVGDLEEEQAGGGNRGGVLILPEKSGQSTSYLRCLYTNARSLGNKQEELEVLAQSRNY
DVIGITETWWDSSHDWSTVMDGYKLFRKDRQGRRGGGVALYVKEPYDCSELQYETGDRPVESLWVRVRGESNKGDVVVGV
CYRPPDQEEVVDEAFFKQLAEVSQSQALVLMGDFNHPDICWEGNTAVHRQSRKFLESTGDNFLVQVLERPTRGHALLDLL
LTNREELVGNVVVDGNLGSSDHEMIEFRILRKGRMESSRVRTLDFRKADFDSLRELMGRIPWEASLRGRGVQESWLYFKE
ALLRVQEQTILMCRKTSKYGRRPAWLSRELFSKLNHKKEAYKKWKLGQITREEYKSIAWACRDEVRKAKAQLELQLARDV
KGNKKGFYKYVGSKRRIRESVGPLLNGGGNLVTEDAEKAEVLNAFFASVFTGKVSSQTTAPGSTVWGGGEQPSVVKEQVR
DYLEKLDVYKSMGPDGMHPRVLRELADVIAEPLAIIFENSWRSGEVLDDWKRANIVPIFKKGKKEDPGNYRPVSLTSVPG
KIMEQILKESISKHLEEKKVIRNSQHGFTRGKSCLTNLIAFYDKVTGSVDVGRPVDVVYLDFSKAFDTVSHNILAGKLRK
YGLDEWTVRWIENWLEHQAQRVVINGSMSSWQPVSSGVPQGLVLGPVLFNVFINDLEDGIECTLSKSADDTKLGGVVDTL
EGRARIQSDLDKLEDWAKRNLMRFNKDKCKVLHLGRNNPMHQYRLGADWLGSSSAEKDLGVTVDNKLNMSQQCALVAKKA
NGILGCIGRCVASRSREVIIPLYSALVRPHLEYCVQFWAPHYRKDVDKLERVQRRATKMVRGLGDMTYEERLRELGLFSL
EKRRLRGDLIAAFNYLKGGSKEDGARLFSVVADDRTRSNGLKLQQGKFRLDIRKNFLTRRVVKHWNRLPREVVESPSLEV
FKTWLDKALAGMI
>CR1-6D_AMi_gag#LINE/CR1 426-1478[Crocodylidae]
MVQTRSAAARGLALALPPAMGSSEASTQTELMAGSAAPCPPVCGGGSVGSGGVGPGGPPACPSCARLRALEEQVRELQAE
VSRLRGIRDAEDEIDAYLCSLQAQSPTVQPPQETRPTQEWQKVSRSRAARPRVVEAPQVHLGNRFEALAAVTEEDGANAS
GGDDATPRVTWNGQRSNTSRKKRRVLIIGDSILRGLEGPICRPDPMTREVCFMPGARVRDITERIPAYIRPADQYPMVVI
HVGTNDAARGNPNRIMKDFEALGAKLKETGAQVVFSSLLLVSRRGWRHEACIGEVNRCLRSWCRQAGLGFLDNDPCFRAG
DLLGRDGLHLSPKGKHVFSSRLADLVRRALN
>CR1-6_Gav_gag#LINE/CR1 201-1265[Crocodylidae]
MGVVTRSAARDPAPMLPPARGSCEASAQTGPLGGSAAPWPPVCGGCLAGPLRPGGSVGAGGSLACPTCARIEALEGQVRE
LQAEVSRLRGIRAIEEEIDGYFHSLQDKTPGGEAARECPEADAGEWRTVTSGARPLAAETAPPVQLGNKYEALAALEECA
VGESALEGPAAITERAEGRPGKQKKRRRVIVVGDSLLRGTEGPICRPDPTAREVCCLPGARIRDVTARIPDLIQPSDNYP
MVLIHVGTNDAARSSPDRIMSDYRALGTRLRKTGAQVVFSSILPVSGRSRHHVTCVREVNPRLRSWCHRAGFGFLDHDPH
FRARDLLGRDGLHLSAKGKSLFSYRLADLLRRALN
>CR1-11_AMi_pol#LINE/CR1 804-3728 [Crocodylidae]
LSSPGDGQTTTRASSPSINCKTSRLGCSREPTPTPAQEQSFSMSTRKPRASNSTLTCLYTNARSLGNKQEELVLLLNRNY
YDLIGITETWWDSSYDWTTGINGYTLYRRDRAEKRGGGVALYVKESYTSLQAEIGTQGGRLETLWVRIRGERSEGDTMVG
VYYRPPNQEQVLDQEFARELAEAACSRCMVVMGDFNYPDISWDEHSAKSDRSQSFLTCVDELYLSQEVYGPTRGKALLDL
VLAKGDDLISDLRIEGKLGDSDHELITFTIHRKAGKSASNAVVLDFRKADFHKLRRLVLEALRGHDFTGRGVHDEWLLLK
EAILEAQGESIPTRRKGGKRAQQPPWLNRELMDLLRLKREAYNGWRTGNTTKEEYTALVRTCRERTRKAKAATELHLATR
IKDNKKSFFRYVGSRKKNKGNIGPLLNQLGQLTTDTQEKANLLNDYFASVFHQPKGTTLPNMMRDDRGEDEYMPTIGVDL
VREHLERLDPHKSAGPDRLHPRVLKELADIIAQPLARIFENSWRSGEVPEDWKRANVVPIFKKGRKEDPGNYRPISLTSI
PGKILEKIIKETILDRLTEGNILRDSQHGFVAGRSCLTNLISFYDQVTYHLDKREEVDVIYLDFKKAFDLVSHDVLMEKL
GNCGLDYSTVRWLGNWLRGRTQRVVVDGTESTWHSVTSGVPQGSVLGPVLFNVFINDLDTGVKSGLAKFADDTKLWGRVS
TLEDRLVIQADLDRLARWADENLMAFNTEKCKVLHLGNKNPHHTYRLGNATLASTMTERDLGVMIDHKMNMSHQCDTAAG
KANKTLACIYRCISSKTQDVILPLYSALVRPQLEYCIQFWAPQFRKDVEKLERVQRRATRMIRGQENRPYEERLRAMGLF
SLEKRRLRGDLVAAYKYIRGVHQDLGEHLFTRAPQGMTRSNGHKLLQDHFRLDIRKNFFTVRAPKAWNRLPPEVVQAPTL
DTFKKHLDVYLAGIL
>CR1-22_CQ_gag#LINE/CR1 1-717 [Culex quinquefasciatus]
GYCGAIFHMICAKVDVPLREQLDLNQTQVFWXCGECAKLFSNSHFRRVVKDHDGGNSEIAESMKTMQNDIANLTSTITDL
KEXVQTQSTSLSTPXWPNKRQRGSSTDTPVKVAIPTASRGTKAMNSVPVIAAEPNDLWYLWLSSFPPSVTDEDIHSMVKE
CLSVEDDDPIVVKMLVKKGVDVSTLSSVTFKVGIGRDYRESSMDAANWPEGLSFREFVDIDRRPAPTVLPSGFSRRRLE
>CR1-20_AMi_pol#LINE/CR1 1489-4408 via tfasty with CR1-4_Gav_pol, 2 frameshifts and 1 stopcodon. [Crocodylidae]
LGMSGGRGEGSTAVHESSSHNDTREGIQAMDVQMSTDILRHRQRDRKPEATRGELRCLYGNARSMGNKQEELALLLADEE
FDLIGLTETWWDDTHDWAVNIEGYRLYRKDRVGKKGGGVALYVKERYPSLQVTFDSREGSLETLWVRIQGGPGEGDLMVG
VYYRPPSQEEESDQAFSGELTEAASTRDMIVMGDFNYPDICWEDHSATSSRSANFLATIDDLFLTQVVEGPTRGKATLDL
VLTKGEDIIGDLRIGGTLGDSDHDLIRFTIHRKTGKSVSRTEVLDFRKADFGKLKRLVGEALCNQQLDDLGVQERWCFLK
EAILTAQKQAIPTRAKSGKGAKRPAWLNRDIRELLKKKKEAYKQWKNGSATREEYTRIARACRYETRKAKAGMEIKLATG
IKDNKKSFYRYIGSKKKSGSTVGPLLNTQGQPTVDACEKAELLNTYFTSVFLKSTGAAHLTRGPGNMGKTTATxNQSEQV
RDLLQRLDVFKSAGPDDLHPRVLKELAELIAVPLAKLFEESWNSGVVPDDWKRANVVPIFKKGKRDDPANYRLVSLTSVL
GKIFEKFVKEAINYKLVTDGVLRSNQHGFVEGRSCLTNLVSFYDQVTNHLDEGHEVDVIYLDFSKAFDSVSHGILSNKLE
GTGLDQSTVRWVDNWLRGRSQRVVIDGMASSWRVVSSGVPQGSVLGPVLFNIFINDLDEGVESSMIKFADDTKLWGNAGT
PEDRAKIQDDLDRLALWAERNQMRFNREKCKVLHLGRKNPHHNYTMGGGPLAGTASERDLGVTIDWKMNMSQQCDEVARR
ANRTLVCISRCVANRSREVLLPLYSALVRPQLEYCVQFWAPHFRKDVDKLERVQRRATHMIKGMEDRPYEERLQELGLFS
LSKRRLRGDLIAAYKYVRGEHQDLGEQLFRKAPQGRTRTNGHKLIEGKFRLDIRKNFFSVRVTRIWNTLPAEVVQSPSLE
VFKMRLDKHLVELV
>CR1-22_CQ_pol#LINE/CR1 669-4508 [Culex quinquefasciatus]
TSAHRIAIGVFEAPPGIISQRRSQPSFAALPSPGRLLERPMEAPNHPVTVEFPASDQHSRPGPVFGCREGVFQATFTGEY
HPLSDLSCPYSPSTSSVQPCHWFALHGTTSHIAALSSPGRMLYGRKEAPKRSDAVAFPASDQHSRPGPAFRCREGVFQPT
FRGQYPITSSNDCFDLDIFSDSSQSPEPGRDPNQDSHLTIRPSPGRTVYGTMEAPDHSVTVEFPASGQHSRPGPVFGDRE
GVFQAAPTGEYRSNQVTSCSENSSAFSSRPSTSHQHDRAAREPFTESQAPTPPSSTDTNASGTCQQIRFYYQNVRGLKSK
VDEFFLNCLDCDYDVIMLTETWLDDSINAVQLFGNAFEVFSTHRNAGNSRRTVGGGVLIAVRKSLDSTVCAEAAAVNLEQ
IFVKIQLKTQKVFVGCFYLPSEKRYEHQLVEDHITCIESVAGLADPSDYIVVAGDYNQSNLVWKALSGNRSFADPLHTHT
RCRMEKTTHEVLIDGVARNSLHQCNLVPNHQNRILDLIFISDGAERTAVSEANDSLVPLDRYHPALVFDLSAVLDAEFED
VHDPLDLNFRKTDFSELIRSLENTDWTSVLGSSDVDAAVDIFGSVVRELLARHTPCRRPPRKPAWSNASLRELKRQRAAA
LERYTQHRGPITQAVFKAASSRYKSYNKRCYKSYIRKTQENLRRNPSQFWSFAKSKYQENGLPSTMVLGETVAKTNAEKC
TLFAQHFASVFQQPGPAPASEQHLELVPRDVVDIDVFVASKDMLKRASLKLKSSNAPGPDGIPSVVLKRCFEQLSEPLLK
IVNLSLQQSKFPTAWKKSVMFPVFKKGAKRLIGNYRGITSLCAGSKLLEIVVGEVISFNCRSFICPEQHGFMPGRSVTSN
LMEFTNFCIENIAAGRQVDAVYTDLKAAFDRLDHTIVLQKLAKLGFSSRMCRWLESFLKERIIQVKIGTSLSAEFSNGSG
VAQGSNLGPLVFTVFFNDSNALFVDKCKLLYADDFKIFLAIDNLADCYGLQSRLDKFSNWCDVNRLELSVQKCTTISFHR
KTRREVFSFDYSLGGHVLERLEVVKDLGVLLDEKLTFRQHLSAIVDKAYRQLGFLFRMAREFDDPLCLRSLYFALVRSHL
EYSSVIWSPYHQNWIDRIERIQKKFVWYACRKMPWNDPTRLPSYEARCNLLGIETLETRRTIAKAVFAAKILTAEIDCPH
LLSLLNTNISSRNLRPRADQGLLARSFARTDYQRNSPVRSISDAFNDAYRFFEFHEPVSKFREKLRAEFKERTRIRLSRN
>CR1-33_HM_gag#LINE/CR1 211-1059   [Hydra magnipapillata]
MTKLTDQQKNCIALMINKAFEELKDDFQVKLNQQTKLFEVKLKEKDAEIAELSEKVKRLEENNANLPPSSSPAVCYSQIA
KQLAKPGSELYNASIKVSKSHEILSSKKSKNVVIVGLPNSQKTIIEDRKTDDENMVNELIRSLNRRIIIKSTFRLKSKVP
LVNNASEPLVVEFENEVARNEMLAAARELSTIEAYKKVYIRPDRTPDEQAEFAQLNKERKEANEDLQRNNNLDQPFRFVI
RSGKLLCIDVTTTKDIGNRKVHPFVKESVAKQARRGSYQPIL
>CR1-24_CQ_pol#LINE/CR1 613-4164 (tandem repeat preceding it removed)  [Culex quinquefasciatus]
MEDLRLSVTVVPPHSRKYAFCSSHPSRPGPVFGPRRGVFQNHLVGKYPYAENDLVSLPDAHLTSSNVSTNESLRPDSAYR
SQDAASQQSTDNADPGRPPIRIMEDPDPPDTVVPPHCCDSSRSGHQSRPGPVFGSREGVFQTPNAGKYQAAFQVGYALDP
DPRLLSSDVQTTPVHSDDPTTPVHHDNRRSSAGQPVIFEPIRFYYQNVRGLNTKVDDFFLSCCDCDHDVILLTETWLDGR
VTSAQLFGNNFSVYHTYRNPANSKRKVGGGVLIAVRNSLDSVECVQAVAENLEQMFVTIRTPSKRIFVGCWYLPPEKRFE
TELMEKHLSCIENIRRIAGPHDVIVVAGDYNQGSLVWKHLSGNRSYVDPQLTRTRTEKERLTHGVMLDGMANCNMHQCNL
VKNDRNRILDLIFVSDDDCTVVAAADEPLVPLDAPHPALVFDIDASRTVFVQVDNNDRVLNYKRTNFDELQRTLADVDWT
PVTSAMDVDTAVREFSNLLNFHLAQHTPQFRTPPKPEWSNARLKRLKKERAAALKTFTLRRCRMTKLAFNAASSRYRRYN
RYRYNVYIRKTQSQLRRNPKKFWTFVKSKYKERGLPATMALGDSTATTNDEKCELFARHFSSVFREPEIISSTHHLDAVP
RDLVDINTFVISRDMIEKATKKLKSSFSPGPDGIPSAVLKRCANQLIEPLLVIFNLSLRQATFPTAWKKSFMFPIFKKGS
KRSIENYRGITSLCSGSKLLEIIVSDVILFNCRSYVAPEQHGFMPKRSVNTNLLEFTSFCIDNIAEGRQVDAIYTDLKAA
FDRIDHDIALQKFSKLGFSPMLCRWLESYLKGRIIQVKIGASVSLEFTNGSGVAQGSNLGPIVFSGFFNDANFLFSGNCK
LSYADDFKLFIPIDTLADCYVLQSRLDKFSEWCGHNRLELSSAKCYVISFNRKQSRELFTFDYHLGSHVLERLEVVKDLG
VLLDLKLDFHLQLSSVIDKANRKLGFMFKAAQEFDDPLCLRTLYCALVRSHLETSAVVWAPYHQNWIDRIERVQRKFVWF
ALRRLPWNNPAQLPSYETRCNLLGIETLQNRRTISRAVFAAKVITSEIDSPNLLFQLNARVQPRNLRPTPGFLSRPLVRT
VYAENSPIRALATAFNEFYHLFDFHEPVSRFLERLRTELRDRSRSSRPAENPQQRASRTRRSSR
>CR1-19_CQ_pol#LINE/CR1 329-3493 (after collapsing 4 copies of a 218 bp-unit tandem repeat in one) [Culex quinquefasciatus]
MRAPRLPDATTSSPRQRLRTPASRSHQSRPGAGVGVGGGVSQPAPFGKYPPRSQHFLPDVRPTSSSCAGPSATQIANAST
LSATVPSQLANDVQPQRPGSVDRRDSSLLTIYYQNVRGLRTKTNQLHLSLSSCDYDVIAFSETWLNAKIVDSELSSDYTF
YRADRSRETSVLERGGGVLIGVKKRFHPEPIHLRGGEKLEQIAVRIPLPGKTLFVCCVYIPPNSDATIYTQHSSCVQQLC
DLAQGPDEVIVVGDYNVPNLTWHFDEDINGYLPSGQSTEQEVALIEDVLGTGLQQMFDLPNANGRLLDLALVSDSSRFQL
IEPPRAILKVDAHHRPFILVLETQSTGTAAEQSGTYYDFANCDTMALNNSIASLDWANLLLVGSVDDIVERFYDKLNEII
REVVPLKHRRPHPNSHQPWWNRETRNLRNRLRKARKRFLKHPTEMLGRELADRELHYEMSLEAAFRGYISGIESNLKREP
KSFWAFVKKRKQDKGIPQDMVYRDSSASTPDDSVQLFADFFKTVYSANQPTTSNESLDKILPHELHMPLVCLTEEDVRKV
LASTDASKGPGPDCIPPSIVKQCAATLANPLAIIFNRSLESGVFPAKWKVASITPIHKSGNVHNVENYRSISILSCLPKV
FEKIVHEFLSRAVQPIISACQHGFMAKRSTTTNLMTFVTDVLRSMESRCQVDAVYVDFAKAFDRVPHQLAVEKLRRLGLP
EWITTWLHSYLTSRSAYVKLGGSKSGLFMIPSGVPQGSHLGPLIFLLFIDDLCHWIKNDKVLYADDLKFYRTITSPLDCL
ALQSDIDSLMRWCDQNGMEANAKKCQVITFDRKLRPITHAYMMGISLLDRVCSVKDLGVTLDRKMTFNEHITSVTAKAFA
TIGFIRRNTTAFKDIHALKALYSALVRSQLEYAAQVWAPYHNVHIARLERVQRAFVRLALRTLPWRNPPEQTSIEDRRRL
LGLDTLLKRRQRMQQLFIFDLLTKRLDCQKLSQLLIVYVPPRNLRRNPSMFRLSVHHTVYGHNQPFDVCCRLFNVVSDRF
VLNMTKDSFKKLISC
>CR1-14B_CQ_gag#LINE/CR1 25-1515  [Culex quinquefasciatus]
MRVDVPVDQTLDSNNSVPTVSDAEAALGAAALAVERAAAARTTNSSIVQAAQLDGTTPPIAPRNAVATSAAAAQSATAHP
DAVHPAASHAAPAAHSTTALLPPTDPGVQQAVLPHSQVSQQLLITPQAPPQPQTMPSSQPLVVPPQSMLPSQPLVSAQPP
PQTMPLLQPLVLPSPQRQAPPPPLITQPLQTAPQALTHAASTSSSSSTATNRIVPDARFSVESYQQSKAPEVNFIPFKTS
FIVSEGNRINVHGPSLTQCQQLLDSNISEPNCQIHEQNCTPHTTQATNYCETTNTISNLQHPSLLVAPPEQSTSDDSAEL
KWFYVSRFLPSETCDNLIRYIQNKTXCDSARIICQKLVRKNRNSARPLTFLSFKLSVPESIESLIVATDFWPEGVTIKPF
LVKRQAPELIGPSSHNPQPLNNLVSPRSSRTTTPRRRPAPKMIPNQPQHTARLYPYNLPLPFYHPSQLAVPHMNQYLPLY
GQMPEAVHHRQQWSTMV
>CR1-14_CQ_gag#LINE/CR1 404-2420 via tfasty with CR1-14B_CQ_gag, 1 frameshift. [Culex quinquefasciatus]
MPKTGKIEVVACCDAGSRGTKIRCEFCAKSWHTKCANITANAIKTLRDTGGACWLCPTCRTPDGRQPASSDTSKLILQRV
TSALLLIGNLTDTMRVFCRMYSASLSASTPSTTVLPPTAALEPDLSDAFHANLSDLFDSILGDGNKRPRTSSLSRASEVQ
PEKILRVDVPVDQTSTSNITVPPVSGAADASPSATLETAVTTTPSAVNLLAVADPATSPLAAAVAAVTGVANADASADTL
LGSSELAASLPISPHQSSTTATAAAVAAMPPTIQPEEPPLTMLSVQPLVTPQPPPPQIMPSLQPQQVANIPQVLQPLQIM
PQAPPQPLTMPSSQPLVMLSPTMLSAQPLVTPQPPLPPPRKLAPPPPLIMQPLQTAPPASTAASTNEFAVRSSEAVDSNK
QSTTPTVNFIPCPTSFTVTDGNNINVYGPSPALLEQLTVSTNKNCQTRQTNCMPHTTQNNAMLNQAANNPSPPGNINQSH
PTLLVAPLEQPVSELKWYYVSRFLPTETPENLIRYIRHQTNCDALIVCQKLVRKNRNANRPLTFLSFKLNVPESIENRIT
AADFWPEGVTIKPFLVNRQPPQQTGPPLTNLNQQNNHMPIRSSPRTVTPRRLPSQTMTPRQLSTQQTVYPYPPNLSWPAF
HPNQLTVPSVYQYMPQYSRMPEYSNIQQSTMV
>CR1-17_AMi_pol#LINE/CR1 1256-4165 [Crocodylidae]
LGSPGDGDAEEHEDTSPSSQVTRTGSTQVSDRGQGRLRNKGAARAPTGGLKCLYTNARSMGNKQEELALLLASKNPDLVG
LTETWWDSTHDWAVDIEGYRLYRRDRAGKRGGGVALYVKEQYTSSMIRMGSEEGQNEALWVRMQGGRGERDLIVGVYYRP
PHQGDELDLEFSGQLTEAVKSRDVVVMGDLNYPDICWEEQSARSDRSRRFLAGIQDLHLTQEVHSPTRGNALLDLVLATG
DDLVRGLRVLDHLGDSDHRLLEFTIQRRVVKASSKAEVLDFRRADFCKLRRLVGEALGSRSFNEMGVQDGWLFLKETILR
AQRESVPMRTKGGRSAKKPPWLGKGIQGCLRAKKEAYKQWKQGAITKEDYTSVARDCREAVRKAKAEMELGLATRIKDNK
KSFFKYIGSKKKAPGNVGPLQDRLGNLVIAANEKADLFNEFFASIFLNRDRDISPTRIADGPRGGTAMPRVRDDLVRELL
EGLDVFKSVGPDALHPRVLRELAGVIAGPLARLYERSWGAGQVPEDWKRANVVPIYKKGRKEDPGNYRPVSLTSVLGKTF
EKIIKEHICKGPAGEVMLRGNQHGFIEGRSCLTNLVSFYDQVTKSLDEGVGVDVVFLDFKKAFDTVSHHILLKKLGDCGI
DAYTVRWVANWLDGRTQRVVVDGSFSTWRDVGSGVPQGSVLGPVLFNIFISDLDVGVEXTLSKFADDTKXWGEVGTLEGR
DRIQLDLDRLQRWADENRMEFNADKCKVLHLGRRNQQHTYRLGNTLLVNTVAERDLGVIVDSRMNMSRQCEEAVSKANRT
LSCIYRCITSRSREVILPLYAALVRPQLEYCVQFWAPHFKRDVASIERVQRRATRMVKGQRGRPYEERLKGLNLFSLHKR
RLRGDLVAVYKLTRGDQRELGEALFPRAPPGVTRNNGHKLLERRFRLDIRRHYFTVRAARLWNGLPSEVVLSPTLGVFKR
RLDRYLAGVI
>CR1-18_Crp_gag#LINE/CR1 418-1497[Crocodylidae]
MRRGATMGVVTRSAARDPALLLPPARSSCEASTQTGPLDGSAVPWPPVCGGCLAGPLRPGGSVGAGGSLACPTCARIEAL
EGQVRELQAEVSRLRGIRAAEDEIDGYFHSLQDQTPSAETSRESPRTAEWRTVTSRARQRAAVTASPVQLGNRYEALAAL
EDDAAEEAAGEDTSATNTRQAERQPSSRRKRRRVIVVGDSLLRGTEGPICRPDPTAREVCCLPGARIRDITARIPNLIRP
SDYYPMVLVHVGTNDAARSSPDRVMSDYRALGARLRKSGAQVVFSSILPVSGRRQHQDACIREVNLRLRSWCHHAGFGFY
NHDPHFHERGILGRDGLHLSSKGKSLFSYRLADLLRRALN
>CR1-17_CQ_pol#LINE/CR1 2-1648 [Culex quinquefasciatus]
SSSAKEAAQLCADFFKTTFVQHEDPVSDHHLRFVRPQDLTILQPRLTRQDVLRALSQVNTKKGPGPDRLSPLFLKSCAGS
LAHPVSILFNLSLQTGIFPSVWKTAAMVPIHKSGNLHNVENYRGVSILSSLAKLLELLVLNAMKEATNPILSDYQHGFRK
ARSTLSNLMVYVPYVSKALGNRTQVDSIYIDFAKAFDRLPHKIIISKLAKLGLPDWLLTWLSSYLENRKAYVKHGRSCSK
LFSVTSGVPQGSHLGPILFNLFINDVCEVIKSEKVMFADDLKFYREVYNTKDCAELQDDLSAMIEWCSANGMQVNASKCK
VLSFYRGNSPILYRYLSDGKELERVESIKDLGIVVDKKLTFKEHLSATVAKARTTLGFISRNTQEFKDFQAIKCLYLTLV
RSILEYGVQIWAPRLIGDANLYERVQRTATRMIIRKLPSNHPVRQAHYEERLQFLRMEKLSLRVSFLRRLFLFDVVNGNS
DCQALIALLPPQAPERNRRGDVLFRIPNDGWRSYFNPFYECCKCFNSVCVKFTNGMSKLSFKSRIKGID
>SMAR13#DNA/TcMar-Tigger 1150-2862 77% similar to Fugu Tiggu2  [Schmidtea mediterranea]
MDPKVKDKTGEKKKPKKMISMEAKHEIIAKHERGVRIIDLANEYGRNPSTISTIIKQKEAIKKLQPSKGVTIISKLRTNI
HDEMEQLLLLWIEEKQLAGDSVSEAIICEKAGAIFQDLKRDATETEGESSQGGEGFKASRGWFDNFKKRSGIHSVIRHGE
ASSADIKAAENFIKVFEKLISEEGYLPQQVFNCDETGLFWKKMPRRTFITAEEKSLPGHKAMKDRLTLALCANAFGDFKM
KPLLVYHSENPRAFKAYKLMKEKLKVLWRANSKAWVTRQFFNEWMNIVFGPSVKKYLIDNGLPLKCVLLLDNAPAHPPGL
QDDLLDEFKFIKIVYLPPNTTSILQPMDQQVITNFKKLFTKHLFKRCFEVTENTNLTLREFWKNHYNIVICLKLIDIAWQ
GVTKRTLNSAWRKLWPDVVLEREGFDGFEPIEEEIVSIGRSMGLEVDEADVADLIEEHAEELTTEELKELQKVSHSEVMM
ELSSEEVVEPEEELTSREISDILGKWQEVSDFVEKRHPEKLSTGRASALFDDRCLTFFRNILKRRQKQTSLDRYLVKVSR
TESQKSEAKKA
>MarsTigger1c#DNA/TcMar-Tigger 503-1813 [Metatheria]
MPSVFTAISHVTSRGDLAVIFASRVSRILCRLNAINSIKIMGPKRSVPSGSESAPKKQRKVMNLKEKVELLDMLHSGKTA
AAVGRHYGVNESTVRHIKKKEKEIREAVAAATPTTAKHLHKPRDPHLSRVESATFFWVQDCYXKGIPVDSGIIREKAKSL
YDSLKENEGEGSTPMDFQASKGWFEILLKRFSLRNVKVTGEAASADQEAAREFPETLKKLIEEKGYKPEQIFSADETALY
WKKMPQRTYISQEEKRAPGFKAARDRVTLLFCASVVGFIIKTALIYKAANPRALKGKDKYQLPIFWMFNKKARTTKALFL
DWFHQCFVPEVRKYLASKGLLFKVLLLLDNAPGHPEPHEFHIEGVEVIYMPTNTTSLIQPLDQGVIRTFKAHYTRYSMER
IIETIEENPDKDKKFYADFPDRGGAMPLTPAMWKGY
>Tigger10_Monotr_tp#DNA/TcMar-Tigger 214-2016 [Monotremata]
MESEIPAKSRGEKHKRVVLTLKQKIDICTRLEKGENRNVLMEEYNIGSSVIYDIKAQKEQLLKFFASSETNKAVEHRRTL
HAPKXEQLDSVLYEWFSLKRSEGAPISGPMLIEKAKXFYKQMQLTEPCAFSDGWLSRFKLRHGIRRIDISGEQKSADHEA
AEXYCGFFXNVIAEHDLSPEQIYNADETGLFWRCLPNSTLAGAGESSAAGFKQNKDRLTVLVCANAAGSRKIKLLVIGKC
NRPRAFKGVKHLPVVYKAQGNSRMDKDIFYDWFHHVFVPSVKEHFRNVXLPEDSKAILLLDSCRAHPHATELVSGNIFTI
FLPASVTSLIQPTDQGVIQNMKCYYRRDFLRKLINHEGTIQDFQSQXSIKDAIFNVACAWNSVKSETLRRAWIKLWPGVI
FAEVSSDEDEFEGFKGRGRKNTLAEILETVRDTPSSHPINKLRENEIKEWVEADKGVEVTRYVTDAEIIDNVLNSDMSKD
TDKDGEEEDFSGGRQDTWGKAASAFDTLIKFAERQPRYTAQEVMQLHILHSAFMQKRQKTSKQADIRDLFTKASRVCHRV
STDSTRSPQPSTSTVGTAVIDADDPEALPDPQVPPESQKKD
>Zator-1_BF#DNA/Zator 254-4583 Via genscan, 2 introns (629:1197, 1347-1524). [Branchiostoma floridae]
MATKSTDRDSPPNYVSIKVTRKGGGVVVNWYAIDCGQGDVTFAQLYEKLVAASEFRPVNFSDILSRTAHVQYFCNEEKVG
RGVEVYAGLKVGHACRQFGCFVRIEVDKTASGKTDEDPRPKSAFEVMMTASREQSRETFMFPAYAGSGNAENNNPMGHIR
LYNDIVDILKKHNFRFERNKGNEVSSKEVLTAVRNAVWYVLPHLKTLADRTIYLPQELRSLYDDKTFKQTYNNPLLYRHT
LKPMSGKELHDHAQELFKVCCVPLLQKPHLKKVKDMVVTLGEGMSEYSEHLEKSNRKVQEQRKQLFPVRSVQDGNSSELR
VVEAKVRHDPKIINRYCQLEQHLADTEEYKVCFLNDFAPEDCRKRYTYISELQLPMSVELYTYKTGNNMGSLHFIWKVPP
SKECRDFNLSNRLMHEVEKNVPVYHTREMHKKFNDRFALISSAKPVVLREMYQFLTNDASVEECQLSKDIRQRLKILLDS
GDPDLIVDMRSLNEKKESYEEFWSEASKVIEEMQLASVNDRRHGQVCYMALAMSIPDFISQVAKRLPKETNIPCPSWVSL
QFWPKNAFADKAVRYTGRLGVKYMVQSRQLNHNHPDCHYAAAVFKYMKEFAVMFKDYSAFVCLDDKHSIKVVEPGYPVAA
VDRGKSVLVAKDTVFVVADHDFTKVKLVPSVTLVCDIPESACESFYRGKVFVCMKDATFQPSSPIRHQTELYHILTKAGK
LGLPILCQYSDGGPDHRLTYISTQVSLICTGMFIILDLDMLVCARTAPQNSFRNPVERVMSIINLSLQAIGVMREKMPPA
IEKLFAGLGTMKDVRAMADKHPELKQALVASTEKTRGMMNELFQRLTLKGEAVSTIKPATEQEVEEMWDLILMVDQALTK
GDTTKVKVQNKKDLMAFMHHCCVPRHYSFSIKKCGDSDCTICKKPKLPPEVFNRLKTFPDPVLSGTGEHYKPFIEVYGTA
TSEGYRPSLKESRAKEHSMPFSPCAENTRGVVTCLDCGKPRTIHSQRALTTAQKKDLDSLKEDSMYTCGVSWIPDDHPLR
ESCYVSRALSCAVPVEPYYYSARLKAPAALRSILPLVCWQCGEEETLPIPLEKAKQFQTIHPVCQVCKSAGVEERTRGKK
KLKRRREAEDDN
>Tigger12_tp#DNA/TcMar-Tigger 282-1366 via tfasty with Tigger7_tp, 2 frameshifts. (fragment) [Mammalia]
MAPKRKPTASAGDGSEEKVKKSKKVMVLSQKIEVLDKLKSGMSNSAVAQIYDVNESTICSIRKQEKAIRETVSASAPASA
KIAHQVRDKTLVKVEKAVNLWCEDMHRKHVTLDGNVIQEKARSLYKHFHEATGGEGTSAATEPTFTMSKGWFENFKKRFS
LHNVKLTGEAASADHVAAEAFPPELKKLIEEKGYRPEQVFNADETGLYWKKMPSRTYISKEEKRASGFKAAKDRLTLLLC
GNAAGFMIKPGLLYHSANPRALRGKNKNLLPVYWQSNKKAWVMAQLFLDWFHKCFVLEVEKYLAXQNLEFKVLLIIDXAP
GHPQNLTXYADXNVXVVFLXPNTITLLQPFN
>Mariner-7_Crp_1p#DNA/TcMar-Tigger 195-1979[Crocodylidae]
MLFCACVTVLLHFLSCTMSQKRATDSESASAEKKQRKSVTLELKLDVLKRIEAGECQNEVCRALNLAGSTVRTILKNKDK
IKECGRIVTPLNALKLSRSRAPIMLEMERLLSVWIEDTTQRRMPLSMLLIQKKAKSLYDDLQKNLPEGSASEPFYASKGW
FERFKRCSNLHNVSIQGEAASADTQAASSYRNKLVEIIEEGGYTPQQVFNADETGLFWKRMPSRTYISREEKSMPGFKVS
KDRLTLLLGGNAAGDFKLKPLLVYHSENPRALKGYLKSSLPVIWKSNKKAWVTMSVFQSWFRDYFCPAVEKYCAENNLSH
KALLILDNAPGHPTTLDDLSDNVKVVFLPPNTTSIIQPMDQGVIAAFKAYYIRKTFAQAVRATEGEGALTLKEFWKGYNI
RKAIDNISSAWDEVASKTMNGVWRKLWADCVQDSQEVEEPVVTIQDNIIELGRKIGFDELEPEDIQELIDSNREELSNED
LIQIEQQRSHEEEEDAEEDVQPARALTSKGMAEAFKHLEAFLSYFDENDPDMQRSSAVARGVNNEVNCYRLLYDEKKKPK
VQLSMDSFFRKCTTPGFNPCSQPSKKSSAKHFKIP
>Mariner-40_HM#DNA/TcMar-Tc2 578-2575  [Hydra magnipapillata]
MASDRKFSRTDRDKYSLEEKNALGKLCKSYKKEYDLSIAENFQKVNFSEKRKKHVKTLPREGYLARAVREFYSDLKDIKH
DNPTLTKALKLGKRCLNQVEADEDAVTAPPSKSRYRQAGGGRKLTIPDVRQLLFEWFVDIRGTLKARLPRKMFTAQCKLF
YEQWLAQQPEEVPENKKIVFSNRWLNNWMSEHGVSLRHPNKRFQIMQADREERIFEYLKNIWTVRKYFIENFGVDPPVLN
GDQMPLHRNESSTQKTLNFTGLDTYVKENYSLSRERITVYTQVCSDPKVSIKPEFVFKGKGVRVKLNPPQDVKFQWAPKG
SYRLEHMLSTIANLPNRHNIFTHQNYGIYVLDDYSVHIMPEIKAALLKKGYIYVGIGGGVTGDVQINDTDFHRPLKAKYR
ELEQNLMIEQLRLDPKKIPQPSRDHMMQMLLKSWNSLEIDVTSRFKALWVTNALDGSEDYLVSERIFALVGEKLQAFRKK
LMLTPSPRNLKDLQGLITPPKGVKRKQGQNTCETEPLDEGYELFDCEGETLFINQLDEEHQTDEENDTNLETSALENQDE
NNRVNLNTDSSSNILLGDLCQGNDDLRKDAVFIDELGKLLCNAETSTQFIPHLTRLKRSYITSRRAIKSRIENNFEAFDN
EQLENEVEHRDENDSIRNAFEDLFK
>Mariner-2_XT#DNA/TcMar-Tc2 764-2125 [Xenopus (Silurana) tropicalis]
MYAFSMHFLFFIYCSAEIRYQYRPLTKMSKQKRSTYKVGFKLEVIKYAKEHGNRAAERHFGPPPSEKMIREWRKQEDQLQ
KLQKSKHNLRGHAAKWPELDIKEWITHHRENGFLVSTKMIINKAKLIAVEKGIQNFTSSPSWCYRFMKRSGLAMRTKTKI
AQKMPKEYEEKILSFHKFVIDARKKNQFELSQIGNMDEVPLTFDVPSNITVDHKGAKTITVKTSGHEKTHYTLVLSCCAD
GTKLPPMLIFKRKTFPKEAIPRGVVVHVHDKGWMDEKGMRLWIEKVWSKRPGGLLKKPSLLVLDQFRAHITDTTKKNFRE
VKTHLAVIPGGLTSQLQPLDVSINKPFKVFMREEWNKWMAAGNHDLTPTGKIKRPTITQVCEWVKTSWDSVKDEIIVHSF
KKCGISNTLDGTEDDMLYENTGTSTSSDESPVSDCEDLSFLDSDSSDVEFFGFS
>NP_496989_tp#DNA/TcMar-Tc4 gi|17535483|ref|NP_496989.1| tc5 transposase and CENP-B protein and Tc5 transposase, C-terminal family member (2O655) [Caenorhabditis elegans]
MSLNISNVLFLLHQKFPDPLPDNPICTREETKLAGHLVNILKLAVDHDIDVEERDEVADETFSDWDSIEFEPNDGVIFSS
PTELVFGGRVVTREEANTALDYYRSAKAGKRTLEAMRNRFRWITGRHDMDKLKLYEKDRDNFKESRRNLLKFLGERLYEE
VKGRLDSGICLHDRDLKMIALDINKKETHVENFKACQTWITNWKRSYNIVSRKITKFVTRRYVRNKAATLQSAKDFVQGC
RMDISSYGPEMIFNADQCGIQKELFGARSLAYLGEKSVERIVQSLSSLTHSFTFLPMIFMNGTLGPKAYMKIAEPTGHFP
PSRPIPVCSNLEVHAGKSHIMTKDDMRVWLRNCVAHQQCPKKMLMIVDSWTSFKDHATIQSCMQNGVDLTIRNIPPGTTS
LIQPLDVHFNGPWKTLIKNFTSYVMSFCPDYIIANRNNTIMMTSLLYHQVSAALFEPFLKYSWNKAGYTDSHDEFVTPAD
YCFGDVGEEECGFGGCSEFSFIRCARCNCQICFEHFVVDDQHFCPCP
>Mariner-1_AMi_tp#DNA/TcMar-Tigger 248-2020[Crocodylia]
MSQKRATDSESASAEKKQRKSVTLELKLDVLKRIEAGERQNEVCRALNLAGSTVRTILKNKDKIKERGRIVTPLNALKLS
RSRAPIMLEMERLLSVWTEDTTQRRMPLSMLLIQKKAKSLYDDLQKNLPEGSASEPFYASKGWFERFKRRSNLHNVSIQG
EAASADTQAASSYRNKLVEIIEEGGYTPQQVFNADETGLFWKRMPSRTYISREEKSMPGFKVSKDRLTLLLGGNAAGDFK
LKPLLVYHSENPRALKGYLKSSLPVIWKSNKKAWVTMSVFQSWFRDYFCPAVEKYCAENNLSHKALLILDNAPGHPTTLD
DLSDNVKVVFLPPNTTSIIQPMDQGVIAAFKAYYIRKTFAQAVRATEGEGAPTLKEFWKGYNIRKAIDNISSAWDEVASK
TMNGVWRKLWADCVQDSQEVEEPVVTIQDNIVELGRKIGFDELEPEDIQELIDSNREELSNEDLIQIEQQRSHEEEEDAE
EDVQPARALTSKGMAEAFKHLEAFLSYFDENDPDMQRSSAVARGVNNEVNCYRLLYDEKKKPKVQLSMDSFFRKCTTPAS
TPAASPQKNPQPSTSKSPETDTNPDSSDSEC
>NP_501949_tp#DNA/TcMar-Tc4 gi|17542266|ref|NP_501949.1| tc5 transposase and CENP-B protein and Tc5 transposase, C-terminal family member (4L315) [Caenorhabditis elegans]
MPFRADLIVGGLVEEFGHEYNPSFMSREEQKILERVRRILRDGKTHELIVYSEDEEEIVGGIVEDENWTADDDGPTTYAL
PDKVNFSGNLVDVETVEKAIEFMMDTKHNKFLTMSSVQHRYRFIKSEKDMKKLRKFARNQKVNCSRASSFAKLSELLRAK
VFETMEAKVQIDKLTLRRMAVDLNEEFVHIDDFKASDDWLAKWKKSNGLVSRHITTFVTKASFANKEKTEEAAKKYVDDM
KLELQTLDPNTAFNCDQCGFTKEQYCKRTLAPRGVKRVERLVQSKDALSHSYTILPMLSVTGKLAPKLYIVLQEKGGKFP
KKGHCSPSNLIVRANSSHIMTKDLMRDWVESAVCDPAMPKKTVLLLDSWPAWKNERDVQDAALYGHTVHVRTIPPGATSF
IQPCDIYLFCPMKNFVKKVQSHIIYAGIEFKPHERDNILRLISAVYFFFCAPRFETCWQYGWFKGGYIDSHPSEFETPSK
YCLEATGKCILQCQNAAYVRCPYCKKCICFHHWVGSGFPAHRCS
>Zator-3_AAe#DNA/Zator 540-3849 via genewise with Zator-2_AA#DNA/Zator, 2 introns (1762:1820, 2313:2373) [Aedes aegypti]
KTPIAVRIEREGKLLFQSVTSVAVESSLLETIEQVFGPIVNGTDAVEAIYAGCKSFERHDxFIISPSCTIRDVATAIGTC
TKVLCILKAEITSGKEKTRNAFDLLMQRASITTFPDKKVENDGRDALYNKLVDYLQFRGAGFKVFQKSDMEFFMSSVVSI
LWRLDGQWAKLLGAANVSKPPENLHFKPVDQESFRVLSHGAHKKKTLPLLKKEDLIGDFEKLDELCTKSFLKSDGWRQVS
ADVMQLKASLADYIHHLDKADEQYKAASASIMDDNRSLKTVPPKQNRTSLVQLLYKALEDRLNSVPAYTEQNLIFFAPIE
RRAKYKYITGLVFDFPIQIYKTFKPNASFVWKITQGDESSSAVIISRIERNIHERISTDKSERLSQAYGSVSTWTKEKVG
EIVNAITEDEDLPPEQLQDSKEGFQFLLQEGFSVSEAVHMEQQAQAAKLNKFANFWAAVSKVLANNDYTVAEERRHGETT
WISPLCVSMRDLMSKCETKMEEMFPGSNDNFIPSYEYFRLQFVPRNSHTQVSKRYYGRFDVKFGLQKRTLHKAHVDQHYG
AKQFEFLKIMAGKFSDDSIXFFLDDKASIPVGFENAPVSATRRQRHVLMAGLDGRGLNAMDHDNIPQHLIPSVAIKLYPP
KELSESWYRGKPMIILKDAIFEASSAFRHVADLIKNIEQPDTQKPIMFIGTDGGPDHNVTSIQVMLSYVALFLELDLDFL
CAVRTPPNFSVINPAERFMSTANIALIGVALARNDLGKNEKKVRSLLSKKQWRDAQEKHPETNYRQLAIDGTKDARSLLS
ARFESLSYKGEQVRMGCPATDDEIEACKRRVSTALGGIDFNAKIVKSQLLKENRVKDFFEKHVKATSYAFQVKKCADKSC
KYHKKVRSSRTTFDQIVWLPTPAPDANMKYTSFDSVYGNEPSDEHVPSKIGTAITESVEKMxPKPTFPLAFTRARMxVTC
TECxFPRLLYTKYALDKKEYTKLGQFFEDKLYVCGSHLESFPEVFQNTKxSCFDPVSLHYYQASTHLPGYKDLCAKCLDP
TVTRTEGKLLFCAKCCSKSSQPI
>CR1-3_CQ_gag#LINE/CR1 121-741 via tfasty with CR1-2_AG_gag, 2 stopcodons. [Culex quinquefasciatus]
MDVDDDPSPATDVSKLSEAVEKLSGIVNELSGQMKEKSSKKSFADVVFPGSKREREDDVNNEPPAKIKTVCGTRTIQHKI
KTVVNERELFWVYLGRLDPCHTDEEIAEMTQECLDLPEQPKVKRHVKKDADTSKLSVVSFRVLLPDDLRDTALQPDTWPT
GVTVREFDFDLRPSPRFRQLxASPHLCCxPGTLSQKPFGSAPCPRHS
>CR1-2_DBi_pol#LINE/CR1 1470-4321 via tfasty with CR1-1_DWil_pol, 1 frameshift. [Drosophila biarmipes]
QALHCVKKLKSLMLAYQNVRGLNMKLPKLYADSSAFTEDILAFTETWLKPGISDSEVLANNFNTYRTDRHSRRGGGVLIA
VTSSLTSERILIHIPNEIEFLSVKVSLQSLSVFVTCSYIPPGSDLVIYEHHLSAIKSVLSLLSNRDLLIVLGDFNLPDIS
WSPPTDSFVAMPLSAHDFVDGLLELSLQQVSFIKNSLRRQLDLVFVSDPSEITVCRIDALVVPEDPYHPTMELTICLPCS
DTLSPLVSPTKMRCFRKCNYNKLNDMISHYNWTDLYNCTDIESATELFYTVLNTFFNECVPDGFLSNLNRPPWFTNALQR
LKNLKSNTYKKYKKSGRPADFSKYVVARTDFNVLNSHCYSMYLSRCKFEFSNDPKQFYNFVNAKRKASALPSSVRLNSME
ASTDSEIADLFAEFFQTTYSSTAWSNSNYPNPLNRANCIFSPVITESSLVRDLATTTPTCSPGPDGLPGCVLKFCASTIC
KPILKLFNLSISSSVFPSIWKDSFIIPLHKKGAKADAQNYRGISKLSAIPKAFERIITSHLQHLCSSLISPCQHGFVKRR
STTTNLLELSSIVINGFKKKMQTDIVYTDFSKAFDSVNHSLLLFKLDQLGFPGNLLSWISSYLNGRTQRVIFKNAVSKLI
YVTSGVPQGSHLGPLLFTLFINDLPSIITHSRVLMYADDVKLCLSYNDIASGFNLQSDIDCFHGWCEYNLLNLNCLKCNV
MTFYRGTPTFISYFLKNTPLDRIYSVNDLGVLLDPKLKFDCHIMSTVNKAMSVLGFIKRWSKEFDDPYTTKLLFTSLVRP
ILEYCSSVWSPQYQVHIDRIESVQKQFLLFALRSLNWDQNVRLPSYESRLQLLNLPTLVNRRTMLGTIFIQNLIRGDIDS
AELLNRLTFNVPVRLTRNYYPLNLPRCTSNFCLHEPFRVLCNNYNKLYHLICISTSIPVLKTNILTHLLNS
>CR1-3_DK_pol#LINE/CR1 1412-4267  [Drosophila kikkawai]
LTSSLXISYQNARGLRSKLPKLYSDSVAFASQVIVFTETWLKPEILSSEVFPAAFTVYRLDRPIRRGGGVLIAVDSTLTS
ELIIFEESNNVEFLCVKLSVNGSSIFVTCSYIPPLSELPIYWNHLSAIQLVSKRLSDRDHLVVLGDFNIPGAIWSLDNST
NTLLTTTHHDFIAGLFDISLSQVNHVRNSLERLLDLCFVSDPERVSLARVAPLTQPEDPYHPTFDVTIDMGTVSRNKSDS
PAQEVFCFSKTDFVRLNNFIINYNWSDLYTCTDMAEAVGIFYRVMNSFFIDCVPLYCPSTSNKPPWFTKELTRLKNRKSN
LYAKYQRTGSPIVLSSYLSARSTFTVCNAQCYNNYLTRCRSQFSEDPKQFYNFVKSKRKSITRPSSLSFGNSTADNDQAI
ADLFAQFFETTYSNSIDPNQAYPYIIPKSNQIFSPTINESSLLRDLHRVKPVFLPGPDGIPGCVLRNCAEALCNPLLKLF
TLSLETSHFPLIWKESFVIPLHKKGSKLDANNYRGISKLSAIPKLFENVITPHLQHLCRSIISPCQHGFIRRRSITTNLL
ELTSFIIKGYRNNFQTDVIYTDFSKAFDSVNHSLLVRKLDLMGFPTDLLNWISGYLNGRTQKVLFENKLSNVLRVTSGVP
QGSHLGPLLFTLFINDLPEVLTNSRVLMYADDVKLCVQYNDATCQSDLQTDLNNFQTWCCVNLLNLNGSKCKLMTFSRVT
PKPATYTLNGCSLEKINIVDDLGVRLDPKLDFIDHISCMVNKARGVLGFIKRWSKEFNDPYVTKTLYTSLVRPILEYGSC
VWSPQYGVHSKRIESVQKNFLLFALRGLNWDANQRLPSYSSRLLLINLPSLSDRRTMLGITFLYNLIRGDVESTDLLGQL
NFHVPIRNTRSFLPLVLPHCRTSFELHEPFRVLCANYNDLYTIISNVDSLPKLKTSILTYLRMQATNPAVRQ
>CR1-3_TCa_pol#LINE/CR1 2102-4800 [Tribolium castaneum]
LSVFLNRFVCLQPSHSKISISINKKTVNSFHGIYQNVRGLKSKSVTFFNSFLSTSDEFDLIVITESWLDDTVLDGELFSD
NYYVFRRDRDLRHLGIHRGGGVLIAVNNKYNCRQLDISNISRRSSPAIDLVAIKINVTSYQHLFVFVVYIPPSISFSDFD
NFFDLLNNFDEINNDNVLFLGDFNTPLFSGFSKNNFSISLKHFASFHNFNQFNNIRNNRNNILDLIFSNMDCAVSKSSFS
FVPEDPFHPSLEFTLDIVAKTPDKFYMNRDHVAFNFKKANFDCLYTTLQVVDWSELEKFSDVNEACRVFYETLYNCFELS
VPKLFCRKNYRTFPTWFNTDIINCLRRKSNILKKYRRTKNMHFYEEFKKLRSLSKSLITTAYSQYIGHMENTISKDPKKF
WSFVQAKKRNSRIPGVLYHNGNAISNPNDIVNSFAKFFKSVFSDMTLTSDSPSMMTNLNSFITVNEINEHEIIRVLKRSK
DTLTAGCDGIPSFLLRDCAHIFSKPLVYIFNLILQTSTFPNIWKIAHVCPVFKTGDITQIQNYRPISILCNFSKVFESII
YDRIYSSVKRFISPSQHGFVEKRSTVTNLACFTQFISDALDRKGQVDVIYMDFKKAFDQIDHHLLLLKLDQYGFSGSLLS
LIKSYLANREQRVKYRNYISDSYVATSGVPQGSNLGPLLFLLFINDICGSLSTCAKLLFADDLKIYTEIKSIEDCLTLQN
NINAVVKWCNENRLYLNPSKCNVMSYTKKREFLEFVYDISSVTLHRTFIIKDLGVIFDTELAFSEHIRDVTARAIKSYGF
IYRNCRDFKNLSVMKTLFFSLVRSKLEYGALIWHPIYKIHIDQLENIQRRFLKFLVFIIDGNYPIRGYDQNLLLNRFGLQ
SLQFRRICIIIKFLYNLIN
>CR1-3_NVi_pol#LINE/CR1 1368-4031 [Nasonia vitripennis]
PIFAPIFFNLLIYRTDIIVFTETWLQPALLSAELGLVGYRIYRRDRDLQAVGVSRGGGVLVAVRDHINSSELFVESSLEQ
IFIRISLPDTTMILGAVYLQPNSDTTRYQEYVDGLETVAEANADCQLVMVGDYNLPSVTWRSNPLQFAQTGYVDPEHRMN
AELICGCFSSLGLSQLIPPHPSKGYSLDLLFASPGFIDLFELNEQLVPTDGHHVPSVFNANICCDSDFVPVSKRNFFAAD
YESIVNHLGEVDWDSILSCDCLEDILCGFYNVVDTCISKQVPLSRSNPSTYPVWYDRELICTIRDKKLAHKAWKLTGETS
DEIEFKRLRAVCIRMSRSRYRDYVRSVETGLRSNINAFWSFVKGLKGEAGIPVTTYLDDLKAESESETVNLFSSHFSSVY
DCNPASPLNHLLESRELISNVRVLAEDLRPFVRELKCTANPGPDNVPNVFVKRCWPALERPIVDIFNKMLANGYFPKAWK
RSYIFPVFKHGDRHDVKNYRPISLISCIPKLFDAFLTDVLSQRLLCKITDLQHGFLPGRSTLTNLLIFNDFVSDALENSA
QVDSIYIDFSKAFDRVDHGRLLAKLWNIGVRGSIFNLLSSYLSNRYQAVRINNSVSPAVLVSSGVPQGSHLGPLLFCIYI
DDLVKQFRFANALLYANDVKIFMRIHSEEDVERLRADLNALSGWACENGLVINAAKSQVVSFYRGRTQLQFQYELDGSAI
ARTEVVRDLGVLFDSRLTFAPHVDYVVSRCRGLIGFVKRTTQDFSNISAIIYLYNTLVMPTFIYCCQIWSPYTQIAINHL
DSVQHKFIRYLAYKSGRPMAPIDHDYSLIASSLGIPSIHSVHRYHDGLLTFKLLRKFMICPSICVAIDLYTSIWRIRTLG
SFRPYLD
>CR1-2_AMi_pol#LINE/CR1 1488-4400[Crocodylidae]
LSPPGDGGTTATAGPLSNPCKASRPRHLREPTPAPALERSVGKARAPKGTLACLYTNARSLGNKQEELVLLLNTNNYDVI
GITETWWDSTHDWATGIDGYTLYRRDRVDKRGGGVALYVKESYASLQADIGAQGGRLETLWVKIRGEHGTGDTMVGVYYR
PPTQDQELDQEFARELAEAARSRCMVVMGDFNYPDISWEERSAKSERSQSFLSCVDELYLTQEVYGPTRGKALLDLVLAT
GDDLISDLTIEGKLGDSDHELITFTIRRKAGKSVSNTEVLDFRKADFDKLRRLVGEALRDHDPKGRGVQDEWLLLKGAIL
DAQAKSIPSRRKGSKRAQQPPWLSRELADLLRLKRKTYKGWRTGSTSKEEYSALVRTCRERTRKAKAATELQLATSIKDN
KKSFFRYVGSRRKSKGNIGPLLNQMGQLTTDAQEKANLLNGYFASVFHQSHGTPLPITGQGGPGEGDSLPSINADLVKEH
LERLDTFKSAGPDSLHPRVLKELASIIAQPLARIFENSWRSGEVPEDWKKANVVPIFKKGRKVDPANYRPISLTSIPGKV
LEKIIKEAILNRLADGNILRDSQHGFVAGRSCLTNLISFYDQVTYHLDKGEEIDVVYLDFKKAFDLVSHDHLLAKLANCG
LGLTTIRWLGNWLRGRTQRVVVDGSQSSWCAVTSGVPQGSVLGPILFNIFINDVDIGVRSGLAKFADDTKLWGKASTPED
RRVIQADLDRLRKWADENLMVFNTEKCKVLHLGRKNLQHAYRLGSATLASTTDERDLGVMIDHKMNMSLQCDAAASKASK
TLACIHRCFSSKSQDVILPLYSALVRPQLEYCVQFWAPQFKKDVEKLERVQRRATRMIRGQENRPYDERLRAMGLFSLEK
RRLRGDLVAAYKFIRGAHQDLGERLFTRAPQGMTRSNGHKLLRDRFRLDIRKNFFTVRAPKVWNRLPPEVVQAPTLNAFK
RHLDVYLAGIL
>Ambal-3_FCy_gag#LINE/Ambal 1231-4593 [Fragilariopsis cylindrus]
MPRFNNNFKNKGSRSAAKHHSKTLPGKNPTRTKTATAKPSRKKPPASPASVESHFARTTPSSLPVKATNMVISGDNGKNP
RSPSSTEDKIAPKKTDSRNTPPRDLLQGTTITPDKPDESISPPPKITNKSDGLNTPWEAVTKVVTSRKYKRGTTSTDLTH
LQSTDDESDSSSTPSALIHLKNDKKLSTSILKPKHVSRGKTKEDALSFTDSSKSTDESSESGSASLSAASEKSEDTATLL
KGLTVTKTVHHQDDSTVKSISEATSDTIMQDIYEKTPTSPPGSVNTKTTAASTIASSKSALSSSLKVPANWKNSTTIDIP
KTATTTTAAARQTTIAEANIALEKTRSYDYLKEGKFATTKAYEDLATRSIASNKGFTHYEGLKDGTVLTENVQPDLDSIQ
DGITVNFNQAALQLLPNGWDDPEVTPAKLTEAVREIAVPRKPWKDDTIRQDARAMLIKLARTSPEIFDESWSYTTGFITN
CKEGALWKAANKIYGSQWPWKYSNSLPKLPPKHQQKQKNRVVIPKSSIKTITAARGRFMTRPGGQQTPTTEQAIKDTSEK
NPRNYQTFITLQLPAISVAGQGPGEVQALENFNLAFEIILASDRTCVIYVWPLKFHNNRTVLPYSKKHLDDSYPKARKIE
SKNELQRYVSSAYFSEGKKSWLKMYCGHNEPIQDLLSDTANQTLQDHQMNVYKETLQSPTPMICGWLLGAEPRTFNCKQF
TDLLNSLPKFEKLPVACKKQALKKSKTEKLEYGEGTMAIVILCSSSYRDPTNVAMKATFNRKTAKAISERPDGANFKYIE
YYADTKSKAATRKQLDSAGVAMIKQKKWSQNISQIRIEGIDNLDHPILLTNPLSTPSNPLPDIPTTCKQSILSIKCQTNY
KFFLFSQIHEQADKSIIGICHKDQRAEAEMILGHLQVYQKEEYGNKIEAWYTQQAIDSAVGYSICKDTGQVNHADDDNDA
DTFDGFCTSNSPARTANAIANGTPLEDEYDGNLDDVDSDDDNEPELKIDMKIMFNTSNLGDGGGFDDGHSVSTQLTSVSQ
ATALIGQIGGPQTNIDDVSTVTTEASPGSQAINTIPNQIMQQDSFPMNDATNSLDRTPAPFTNIASNIASLRQTGVQNDN
Q
>Ambal-1_FCy_gag#LINE/Ambal 126-2954 [Fragilariopsis cylindrus]
MVIMSNTIQPGMYLDNIDNRSDNRSIGSRSSFNRNEIPAKNDKDMTLRKITTKSTSNNNKTTTDVEGWTTTSPGKKKPKN
SNSTVASTESIITTIDGNFDSIEAGTSNRIYVTSPGRKNKCNIPDDSRQQTELEFIPTIMAVKRKEKVKDKEQDNGEDND
TSKTNDQDNGNTMEDNREGKDDNKEDKNKTNSKNDSSSNDSNNRGQGGRGERGGGRKGRGGRGGIERNLIPKTEWETYNF
SISFNPKTMNNKDPDTEFQALLSEMMKKSPGITFHATNEDMFPKPKSFSNIQGYPQTEAAFKDFFEVYENKGMTIYKIFI
QATMHYNELDLRNSLLNYLRSNNLWMSSDLISENVDEMIGYINYGHDKMVWRPECEKKINNGINALIQSGSIPQALRLKI
DGLKKDIKIRVAAGTFRGGPRNDPVMCEGLLLRTTKAQARASMELLGLLDDNVLGEFYSIIPKGTDKEIGPQLYGDLLRM
NNDMLNTLRAITVVNWPEELFLELYNPALDVPGTVALRVDTLLMNAWKCVAIERTTETETRGKYLLLFQEEDMEKAKALI
SNLIDDFGRESSSNCAKIALEKFNQFPEFDSIQRVSQSVQAKASKLKEMLQNAAAQRTSKTPKQIQQPRFQFHVAKQLQK
QLHLPTQKSYSNIAQSSAQKKXLTIVQPAPSTAQPTTPQQQPQQATHAEQTRMTEADNTAQQDQTSNENGLRVRTSMNLM
TQDTRTIATNHSGLSDQQTMTTMMTQITQQFQEMERDRITREDKQEAKRQERESKIEERRVEAQRDMYSFMKSMMMMTQN
QNSENKQRKEANPNPIPDELTTGETEQTSALTSSITTTKSLTTPTGKRASALLSNTNEETNMTDIGTEAEDTETIETMST
KRNKSVSVSAKDTEEGQADDMMEDGEENTEKRGENSSSFTDGFNNQQFQPKAIIAPGTGATQQ
>Ag-CR1-22_gag#LINE/CR1 102-893 Fragment, via tfasty with CR1-5_AG_gag, 1 stopcodon. [Anopheles gambiae]
KRLFSELVSATNTSPAISLVAKRTTNINNNNINNNIAVPSLAEHNNINITNNITSRQPIAIYGTDNDSPNLPTVQNRFVP
KMWLHLANIAPGTSCEQVVESVKRRLATTDVIAFSLMGKNFDTTLARPMSFKVRIPAHLRETALSSSVWPSNLRVREFIL
RDNRPASSHPLACLTPMNAHETPLKSINAVPIDNIPKPAEQTINEKPNSSSPSNVQPIVHNMEHSPIPADRTAQNNDVHH
EHSSxSLRTQEASASRYSHTNTSC
>CR1-2_AMi_gag#LINE/CR1 490-1488[Crocodylidae]
MVPGSTQMEPLALGCGGCLSLFQALGPGSMATSPCEVCSLLGSLARQLEELQATVQRLRAIRDCEQEIDSYCQALLPREA
EGRPRSPSRTREDSGTSHSVQPRGWTKVVKGPKARHTKVPAPLELCNRYEPLAAPAEPAKLPAPAGNTGSTVATAPALPK
TKRKVFVVGDSILRGTEGAICRPDPLAREVCCFPGAQIRDIVEKIPELLQPTDHYPMLLIHVGTNDMAWSAPSRVMKRYR
DLGAGLKGLGAQVVFSLILPVSGYGLRRERRIEVVNQRLWRWCHREGFGFHDHSLLFGERGSELLGRDGLHLSPLGRRLF
SARLADLLHRALN
>CR1-1_AMi_gag#LINE/CR1 256-1320 via tfasty with PSLINE_gag, 2 frameshifts. [Crocodylidae]
MAGGRCNARATATASACTCEVSVQAGPLTIEASTQVQVWRCGDCGLQVPSSDGQVGECLRCERCLLVVSLREQARELQEE
VARLRSILCHEEFIDSMLEETSGTVEEELPEAALEKGEDMDSQEGGSWRLVTSGSKQKSSPPPAAVRLENRYGALATEGG
ARSIVEEDRPGLTKVGRIETTATKKKRWVVVVGDSLLRGTEGAICRPDLLSREVCCLPGARIQDVTEGLPRLIRPSDYYP
MLLIHVGTNDTARGDPEQIKSDYRALGARVKGTGAQVVFSSILPVKGKGPGRSRCILQINTWLRRWCHQQGFGFFDHGMF
FQEEGLLGRDGIHLTKRGKSIFADRLANLVRRALN
>I_Ele34_gag#LINE/I 384-1745  [Aedes aegypti]
MSGASPGPPGGTERTICRSNVPEWMLGPDDLGQTMVLVLRRKLKENDXXDQTQXKATLPDSIIVGASIELKIGVKEARST
NATREGRGTRYILRTNSRSILEKLTKITHLTDGTEIEIAPHPTLNTVQGVVYDLDTVNKDENLILDYLKPQGVQSVRRIK
KRVNGTLKNTPLLVLSFNGTVVPDYVYFGLLRIXVRPYYPSPMICFNCGSYGHSRKFCQQPSICLRCSVQHDTPEGEQCT
NPPSCLHCKAEHQATSRDCPKYQQEEKIVRLKVDRNVSITEARRIFAEENKQETFXGVVQEQIQQQLAAKDVLIVTLQKQ
VAALTKEVAVLRNVLKSSTQSQSTSQRDQQIATTRQRSSSKNPSNTTTPQNQPAQRDRLSRKDHCFITPQTDQLENLRNN
REQYNVQTRSRSSKRHMEISPTETVNNRGKRISAQSNTSSASTNAETNNGPGSS
>I_Ele22_gag#LINE/I 412-2115  [Aedes aegypti]
MSLANGYPLLLGDPGGPGGRGGGPSNYINGDYTGARLPHYMDNDGTAGQLQYLKMQAVSGQIPQDPFLLRLSVEKCIGGQ
IDGAYKEQQGLSYVLKVRSQTQFNRLLKMNKLNDGTAISITEHPQLNQTKCVVSNADCTKLDDEYLKQQLAAQGVKDIRR
IKRRKPDGTSENTPTIVLTLSGTVIPPHIDFGWTRCKTRNFYPTPMLCYRCWEYGHTGKRCTHPTRVCGRCSKVHEEENQ
KLNEQSNIRSMEQDESLSTPTSSMSERIPCTEAAYCKLCKTSDHSVSSRKCPVYLKEVAIQHIRVDRGISYSQATREYEA
RMGASRSNSTYTGVVNASKDSEIEDLKAVVEQLRTDAKAKDARIAEMELSPQNRGVHDRMQAVREHGTIEDLIRQVSELT
ATIEKLQQDLRRKDQFILDLMARQRTPEAESCVEIICETPEQQRNALSDSSAEIPPTASFTDPIVNKKVAKWVNAIGTHK
DTGTNPKKIAKDTKNKKKLNNDGNSTDGSMESIISGHSVCTMDSSSTHPSNSGKRNHEESEASNNSSTSSPNAKRHSKVR
KAKATNKN
>I_Ele34_pol#LINE/I 1729-5898  [Aedes aegypti]
MGQDHPKAIHQTTNKNDPATKHDKTLNKRLPPPTFGNLDNCKNSDNDSDQQKRTSAXSTTTXIGKVTTTTXVPKHSALTA
AEYDRIHHLXSIPSTSKTMSVLQHDSPRARPPTSTLTRDVPDYSDEPLAAVGVGSPLXRASIFSSXSSQEQTTASLFPSN
SGRSCIKSSVEVFQCSDSPSARPPTSTLTRNVPDYSDELLAAVDVGRPYSRASILTPLFYREQSNPAFFHTNAEKHTTNI
NFXQNTPLSSSAPTDRPSSITSPLRVTATPPHPDSPSARLPTSTLTRDVPELSDEPLAAVGVGWPYTRASITTLFQYKNP
STSAFFLANAGSSTEVIPGADAINQPASTHHQRNDKAVTSTSHSTTVWKDTGEVISESNTPDRRSVQPPTTNTNHNTTSR
PISPSPSQASTDSEPFPSGGNAAPSFAVQWNISGLRSHLAELQLLIGKHQPIIIGLQETNADSNRLDQNCLGKNYKLFLS
HCSPHGRQGAGMAIKIGTPFQLINLKTKIQAVAVKLYTPIPITVASIYLPPKDKNAVEALDELLKELPKPTLILGDVNAH
HTAWGSRTSNSASECKKRGETILEMIVQHDMVILNNGSHTRIDPSTGASQALDVSFCSATHAAKFKWNTLLEYSGSDHLP
ILIDTHSXRXETQHRPKWIFGKANWELYEQIITNSICSGAILTVDEFTNKIISAAESSIPKTTGNIGRKYVPWWNSEVEA
TIKARRKCLRALRRLEDNDPRKIAALKQFQEARSICRKTINDAKLKSWESFVESINPDTPTSQVWNNINRLQGKRKNSTI
ALNLPTGHTNDGEKVANALADEYQKKSSDEHYSEQFRRKHKADNCETFKNQRSNLHKXYNTDFTIXELIWALNRRGGSST
GADNVSYTFLQRLPFSAKVALLNLYNRIWDSGIFPSQWKVGTVIPIPKHDADRSKPEGXRPITLLSCLGKLFERMVNRRL
ITELETSGKLDXRQHAFRSGKGVDSHLATLESHIDLKPDEHVEIVSLDVSKAYDTTYRPAILRTLSRWRISGRMMNIVSS
FLCDRYFRVAANGSLSSLRKAHNGVPQGSILSVTLFLVAMQPIFDVIPSGTEILLYADDVLLIVKGKNHGDIRRIMKKSV
KAAVGWATDVGFAIAPTKSKLMHVCSSRHRKCGRAIKIDNIPIPRVRSLKVLGVVIDSKLNFIKHFSSIKQSCQRRTQIL
RILGYRLKRSSRATLLKIGSALVHSKLYFGIGLTSGNIADMERILGPTYNDVIRQATGVFATSPIISIMAEAGCLPFHFA
IIQRLTQLAVRLLEKTEDVAGLPLIQRVRTLLMDLTGWCLPDICKTLRTADRAWHSPSPTIDLVLNVISRPVKTRSLHCL
SSMILSRLATVDMXNCIRMAPKITDISAPV
>I_Ele39_pol#LINE/I 1725-6497  [Aedes aegypti]
MPRKTQRNTLTTDFSDPATIMDKSITFPNYSHELRLHPTPATGKQSLKRFEDXESVVLSSLPEEEARLQSKVIQDVFLQP
VEHQAFSPAVMYNKPKDLPHSAKINSTAYDQFRHISVIPSTSKTQIFGYYESPSARPPTSTLTGDVPVQPDEPPAAVDVD
HQTLPASITTIVSYDQSDHIQSFNNTAQPKPNGMNHFEIDRKTFPDCSHELRLHPMPATHKLSLKRFEDDESVAFSSLHE
EEARLQSKVIQDVSIQPVEHQALSSTMRINTLKVLPHSAKINSTAYDHFRNISVKPSTSKTQIFGCYESPSARPPTSTLT
GDVPVHPDEPPAAVDVDHQTLPASINSIVPYDLSTHIQSFNNTAQPRVNGLEYPNNSSLDDESLSETRSACSHEPEKRML
FFQWNIRGLWCNHTELCHLLLDNPPIVVSLQEMMTKNVNNALRKKYTWNSVNRHYSQGAGAAGLGILSEVPHNFIKVNCP
IPVCVARLLNPYNITVVSIYVPPNSPDSHMLETLNSIKGNTDPPYIIGGDFNAAHEAWGSIKSSSRGLKLLSWIVDNNMV
SLNNGEPTFISSSHGSTSSIDLTIVSNSIASRLSWTIAKDTHGSDHFPIRVYSQERHPTEQHRRRWLYKNANWPTFENSL
LDVLQPNKDISIDELNNAIIKSAEASIPRTSGKSIGKTEIWWTDEVQKVVKARRKALRKMKRTAPSDPSYESIRKSFQAS
RAAARKSIVQAKQESWTNFCSSFNPRTPSDVLWNNFNRLNGKRKKGVKGLVIDGAFVQDPPIIAERFANYFQQASTTPAI
SASASNGETMLISSTESNSELDKEFSLDELLRAIDSAKGYSTGKDNIGYPMIRHLPISSKYAMLKCFNRIWAEGKFPQQW
KEGIVVPVPKPGTTQNTIENYRPITLLSCIGKIYERMINHRLITFLEKHNILHPNQHAFRSGRGTSSYFSDLKEILENAK
QSKNHLEFALLDIRKAYDQTWRPHILQQVNRLSVGNCMKSCISNFLKDRLFRVCYGSSLSTQKPQDNGVPQGSVLAVTLF
LLAMNSVFEAVPKNVRILVYADDIVLVASSKQISTVRHHLANAVSAVNTWAKQVNFSLSATKSCLLHVCQRXSHRGSRSL
PAIVVDGEAIPEVNSARFLGVWINRRGQFSTHAAKTKQALRNKVNFIRALSPKASRSTLWKISNAVCISKLTYGVELFGD
GITALLRPIYNELLRISSGALRTSPTLSLATEAGELPFDLRLAELLVRKYCKIIEKTNKNYPYFHETVDRILNQLIEHNT
PCITKLRRVGRRPWNFPRIRVDWSIKREFKKGQNPGIARMLTSNRMDAQYAKHTKIFTDGSKTSNEVGVGVIGPNIYVER
SLLPQCSIFTAEAAGLLFAARAAPRTPTVILSDSASCLSAIEKGKSTHPFIQEFEYVAADKNLVACWIPGHSGITGNEQA
DNAAERGRSSRLLYRSIPAADAIQWIKHQLHAKFQEEWANNSVTFLQRCKPTVEKWIDRENRLEQKTLTRLRIGHTKMTK
KHLFDNTFSPICDVCNTNLTVEHILISCRKFDLVRDELGLSNNLQIILSNTKENESKLLKFIKKCNLSDKI
>I_Ele37_gag#LINE/I 305-1963  [Aedes aegypti]
MALANGFPPLLGDPGGPGGGGGGTGPSNKINGEYTGRLLPSFMDHAGTSGELRFLKMEAVSGSLPQDPFLLRLSVEKFIN
GPIDGAYKENKGIAYVLKVRSKAQADSLRRMTKLADGTSIRINEHDTLNQRKCVVSNYDTIGLTEEYLQSQLSAQGVKEV
RRIKRKNAIGELENTPTVILTICGTVIPPHIDFGWNRCKTRNFYPAPMLCFRCWEYGHTGKRCREPHRICGKCSKVHPED
RIVTTAPDLTEEPTVSAGSSNPPSAIERNRTPCLEAAFCKICQSDDHSVSSRKCPAYVRECEIQHIRVDMGISYPQARRE
YESRQSASSCSTAYTGVVNASKDKEIADLTAKVQKLQSDTKMKERRIEEMERQLQNRGVGDRLETVQQNGTIEDLIRKVT
ALTATVEKLEEALVKKDETIKRQKKEIALFRAMETKSECSNVTVPETQSSTETESIIPGTVEQETTEQVAEWVKCNSRKQ
PEKNCQKSSKNKDNSPAVNSMTDLHGTRNLNTPHALNLPKRNREEESSGDSLSIKAPAIKRSIRARKMKGNQK
>I_Ele17_gag#LINE/I 341-1816  [Aedes aegypti]
MALAPDEFPSFGDPGGGSSNFFDGDFAGARLPNYMDPEGTYGAIQVLRMEATSGRLPNDPFLLRSSVEKCVGAKIDGAFP
EGKDGITYALKIRSKNQISKLLRLTSLSDGTGIKIIEHPTLNVCRCVVNCQSVAGLDDKTIEEGLADQGVRNIRRITRRN
GDKVENTSTIVLTISGTVIPPNVDFGWIRCKTRPYYPAPMLCYNCWNFGHTSKRCQQTRPTCGTCSKDHVIDKETRCTAE
VFCKRCDRHSHSLSSRKCPVYCKENDIQRIRVDLGISYPQARRRYEQAHGQSSFSNVTTAGKDQQIAELSSKVDQLQQEM
EKKDRRIVTLESSLSTDNSSMIADLLQKVDLLTSEMKRKDDRIQALESDLQNNSRMGLVRKHGTIEELVSKVTHLEEQLS
HKEREVNVLRTIFNRKNQLADSKDALSSSEIPSTQDRIQTAEKTKQQLSQKKEKKQKKKEWQPTLMYESDTSPIPPRQKN
FGENTKERSLYD
>I-5_DBi_pol#LINE/I 1473-5096  [Drosophila biarmipes]
MLKVLQLNINGYLNNYNHLQILIKKQHTNHIPIPINYTLYHINTSNNPYGGVALLIHNSLQQEQTQIHNISFDSVAVTVQ
SKVKFTIISSYIPPNKPFTLQELQDTYNNINTPCLITGDFNSWHKSWGSQNNNARGNLLFKFINQSLLTTLNNGSPTHFT
THHTFTHIDLSLASPELFLHAKWTIDNQLSGSDHFPISIQLFGNESTDSSISKPKFNIDKANWPLYQKLSKQFSDDRPLS
QQINQETAHLCTIMKHSAHLSIPQYHPNSSNQVPWWDSDLQILKTNKKIAWKNMCRNINTANIIAYKKANAILKREIKQK
KRIALYEFTSDVNPQTPIPTIWKRINRFCGLKTSTQIHCLINPNNPSDIHTSKYDISKALCEFWSNASLNNNFHPTFISH
KENISFNFSHSTSPLTQSLECDISIIELKSALNQLKGKTPGRDRISYPMIKNLPDSVMQRLLKLYNNILNAHIPQQFKVS
NVIPILKPDSNKTEISSYRPISLNSCLSKVMDKIISKRLWWLVNNSQLLDSRQMGFRKGKSVSDSLATLDYLTTTTLSRK
SHISIISLDFSKAFDKIGIHTILDELVYWKLGPKIMKYIINFLTNRKICVQIQDIQSQPLPLENGIPQGSPLSVILFAIA
YNKVNRIIGLHKSFEFTAYADDYTIINRHKRTDKTINVNPLLTDIQEWCKYSGASLSIPKSKFLHICRKQKCNFKLISTF
NLKNVKSLKILGVTITNNYKWDAHIDRLTTQISKRLNIIKCLSSTSFNCHIKTIIYIIHSIIMSKIDYGLFLYGKAPKSK
LNKIKTMYHSAIRIAFGAFRSSPINNLLYESNIRPIEQRIKHATLKNFKMISTAKKTPLEQIIKKISKTKRIPKLTSAIK
DTIDHCKALQLHPVPITNKKETTPTWSFNFSKINKSLHTLLKPNTPPIVYNKNFLEIKYTLKKHTFLYTDGSKSDKGVAY
SVTSSQQVITQKILPPYSSIFTAEVAAILHACRYAERQKGKFAICTDSLSALTALENPNNSTYYILEIRKIMSKYKYKYT
LIWVPGHCGIIGNELADKAAKQATSLPLISEQNYNIHDTLKYISNHMKAQNDLIWNNTSVHYKLINTKKQNNIDLLNPTT
SRLDTIKFMRLRIGHTKLTHCHLFDKTPPPTCQQCSQNLTLSHIFLECPRYIEQRHKFLQQSLEEIVDPMNISTTIQFLK
SINLYNNI
>I-3_CQ_gag#LINE/I 641-2359  [Culex quinquefasciatus]
MDPDEDQVEKMSESEDWDTDNEGEVDPLPGVPSNQTALELYGKDTKVVVKGTGGRKAKKRKSRLSPKPYPKPDPTSPPTQ
KPDPALPLNPSPLVPTNPTPIPTNPTPPIPPNTNPIPPAPTPPIPPNPNPIPPAPTPPIPPNPNPPGDKERPVQARARQY
VGGSQTEWVVFFRPKQKPLNFVRITKDLHNHYPGLVQCTKLNKSKLSVIVNSAEEANQIVKDIRFCVEYRVWIPAHKVEI
DGVVTDDSLSLVDLSRAVGRFKNPKLPAVEVLECRQLGNVTTEGGQKKFIPSASFRVTFAGSALPDYIELYKLRLPVRLY
VPRVMSCENCQQLGHTKTYCSNKSKCSKCAGPHKDVECQKQAEKCLLCGGEPHKTRQCPKYKEREDKMKRSLKERSKKSF
AEILSQANQSNRFAPLADDSGDEENEEEVLFRRDEESDSSGPNPKRNKVSKSTKAAGGKGKESDSLNFEEDFPFGPSGKP
APKPTPKPAPIPLKPLKPVPKLPKIPLKPVPQPNPITDAFKGVLPFSTIVEWLCSFVSEPTRLIIKRFEPLARHIGKQLA
XTMPLLSFISFDG
>I-5_DK_pol#LINE/I 507-4376  [Drosophila kikkawai]
MTSMMKQWIHFSISTRKSPQHQQETVHLEAKPKKNPPYPKHLKPKIKNPPRITHILQNKHKKIFNSLMSLKILQWNIKGY
ANNYNQLLLLIKTHSPHIISLQETHIQQLYSLPTPINYNILTNIASNRFGGVALLIHKSIQHTQCNINEDVEAIAAEIKS
KQKFKLYAIYISPNKAFSRNNLNNVINTNNELVMVTGDFNSWHQNWGSPQPNSRGKTIAKFIEQSQLTLLNDKSPTHFTT
HNTFTHVDLTFCSPSLTPLTTWNTIDDLYGSDHFPILINLFPKNPTSNPSNPYFKIKEANWENFQKYTHNFNELYPCSNN
INKEAALINKILIQSAHHTIPQTPPNILLPRVPWWNKKLSDLHQEKKEKWRALKRQITQQTIIEYRRANARLKREIKTRK
TEATTTFTSTIQTKTPTTKVWSNIRRFCGLNPAKQIHCITTTNETTTDKNKIANLFARHWSDLSKDTNFDHKFITQKYTP
ITINHSPSTSAIEIEKNITKMEFNMALQSLKGSTPGINRISYPMIRNSSLTTXDRIIAQFNQIYNNYIPQSYKISLTIPV
LKPNKEKIDINSYRPISLNCCIGKLLDKIISQRLWWFLTNNRLLHPNQFGFKKGKSTSDSLLYVDHLITKALNSKKHISL
VSLDFARAFDRVEVHSIIDQLIKWKCGPKIINYIKNFMANRKLATRVGSQTSTIHPLENGIPQGSPISVVLFIIAFNKLS
NIISLHKEINFSAYADDFFLIINLDKRKNINYDLNALFTEIKTWGEYSGASLSPTKCQHLHICRKHNCICTITCNNANIT
NSSSLKLLGLWINNKYKWNTHINALIPALSSKLNIIKCLASPRFNCNTHTLLNVTKSILISKIDYGLHTYGQAPKTTLNE
LKTSFNAAIRLALGAFRTTPIHNLLYEANISTIEQKRDHLTAKLFKSLIQAKDTPIAKYIKPNTRRKKWISTIQNAITKC
QTNGIPYQPITIHKLKPAWQLPSKSINTSIHTYNKANTPPETYQKIFNETKTYYPNHTFIYTDGSQQSSITTYAITTETE
TLAYGSLPPYSSIQTAEILGILEAAKIILKKRGKFVICSDSLGAIEAIKNPLNNNAYPALIRSIISSHYPKIKILWTPGH
RNIKGNEMADKTAKSTLRMPLIFTPNHSSKDINKFLKHQLNQQTQSLLIKCNTWYQNINTNNSHTSIYSKIAQEEVTRLD
QIKFTRLRLGHTNLTHKHHLDTTTQRNCPLCHTYTPVTIEHILNLCPTIAQMKQNILKNTNATHYLSNPSTENIKIITKF
LKETTLYHNI
>I_Ele10_gag#LINE/I 654-2231  [Aedes aegypti]
MVTGPGGPPPWGEAPQLDGAISRRVAGSFSRATLPAFMDRDGMYGDLHVLRLQGVNKNVLPHAPFMIRKSIQAHLGANIE
GAYPEANGNSYALKVRNVRHFEKLLMMTKLSDGTPIEIIEHPALNTTRCVVSCRDVIDESEQKIAEELKDQGVKEVRRIT
RKSGETRINTSTLIISLRGTNRPEFLDFGYIRCRTRPYYPSPMQCFNCWAFGHTKSRCKIEKGICGTCSGDHPFIADKPC
TEAKYCSKCDTTQHAIRERSCPAYRKENDIQRIKIDQDVPYPEARRIYEESNDPKTYAKITATGTSSDFLNLNQKIDELM
EMVKTRDRRIEQLESALNGQNTSTSNLDGNPPAVDCIPSXFQAMLDKQEAMFNRVIKNLIAANIEMQKEVQHLKSSINTX
TSIAHNALTQEDSVIEFATPIESALSKTLTPEKQQPNDDPLDIYSDDSHPLDNIPSSSKHMGTPRPPVSPMIRKKETSSL
TKSHPLTPKRPYSKANSPDKLQDSVNASKVQRQSSLTRKNVSKNSK
>I_Ele9_pol#LINE/I 1414-5774  via tfasty with I_Ele20_pol, 1 frameshift. [Aedes aegypti]
DAPLHTPTDQRHQPSNETNSENNRFEGRECVVPPSLSQARAQQAGGSIRDVLPQPVDGESPSAVDPEEDIVYTPNPPSIP
LRIPIHSHNVSNLSSINVAINHPEMSVDLPSPTACPLPHAITISRSLLRGSVCSEVGNLRHTNVEPSQSYRLSAGETHRH
RSNSPQPPHQKQQTRKISSERGSRRGEGEREVTSPLPRRGVDLRGVECGTSNECLARSVSSWHPVDSQTRPLSSSASSSS
SSTKSNSQADKCYALQWNIRGLRANINELKQLIHEYEPLVIALQETKANSRSVPSHFVGSNYTLILQTGNCQYWQQGVGL
AIREGVPFERIQLDCNLQAIAVRIHLPATVTVVSIYVPPSTQQCQAEMNKLFEQLQGPALILGDFNAHHMAWGSQTENSL
GRFIAEKSLTKQMIILNDGTHTRIDPATGHTSAIDLTICSEALAAKYVWRTLTDTYNSDHFPITVSIRGWSHSLTKKRRW
LYDQADWATFEQTIANSIKVGEDIGVDEFANRLLSAAVASIPRTSGRVGPKSAPWWNSQVEEAVKKRRKALRTLKRKKKT
NSDITEALKNFQQTRTAAKKVVQNAKTQSWENFVAKISPNSTAKDMWQTVNKLRGKQQNNTAIIKRSSGFTDNVEEVAEE
LAQHYSKISASTSYPPLFQRAKEKAEQNRMNVLPNTEDIYNCDFTLNELLWALDKGRSTSTGPDSIGYPMLQRIPLSVKS
ALLDLFNRIWHSGVFPASWRTGIIVPIPKPNSNDSGPAAFRPITLINCMAKVFERIVNRRLMTELESKGRLDKRQHAFRA
GYGTDTYLAELERSLPENNEHCLVASLDLSKAYDTTWRYGILRTLRKWRIGGRMFNILNSFLTDRTFQVQVQGHLSRIMP
LENGVPQGSVLSVTLFLVAVQPVFRVIPNAVEILLYADDIILIVRRRKEETLYRTLQAAVKAVSKWAKSVGFRISPSKSK
IFYGSPNVRRAPRNNICIDQVPIPKTNKLKIIGITIDRKLTFQQHCKTIKSSCESRLRILKIIGNRLPRGHRTSLLRIGS
AIITSRLLYGIGVTSRAENAVIKILSPIYNQMVRYASGAFVTSPVLSVMSEAGTLPFHLLVLQSVTQVAIRILEKNEAAG
DLPIIQRVFSRLEEVMNISPPNISIRTRLTDRIWHKPKPQVVWTVKQQVKAGDPPEMVRPIVHELLSGRFNRYTVVYTDG
SKSNGTVGAGVFGENISRSVGLPPQCSVFSAEAFAIKLALNLVENSKELLILSDSASCLAAIESGKSQHPWIQGIEDALH
NRVVYLCWIPGHAGVAGNEEADRLADEGRHRTPMNVALPGKDTKKAMKQAIRQSWESQWSLLRDVKLREVKFTTEKWPDH
ANPIDQRVLTRLRIGHTRITHEFLLKRTCPPVCDCCGTTLDVRHLILECRKYDEARRQHGIDPTSLRVALSCDSENEEKL
LKFLRDTNIYKYV
>I_Ele43_gag#LINE/I 560-1849  [Aedes aegypti]
MAAASSGDPGGSAKRRLPEYMDPTNQFGELTFLQLSGKNGAPLPINPYITGKSVEACAGGPIESAKTEAQGTKYTLRVRD
PAQVAKLLKLTKLIDGTEVEVVPHPNLNVSRCVISCXDLIQMEEKDILTEMISQKVIRVQRITRNEGGKRVNTPALILTF
CRTTYPEYMKVGLLRVATRPYFPNPMLCYGCFSYGHTRVRCPGPQRCVNCSQNFHGEECGEAPSCRNCKGDHRPTNRQCP
VYKKEVQVIKIKVSENLSFPEARKRVEQQAGSFAQVAAQQSVFERKLKELEAAMLQKDKEIARLQEDNKKKEERIEQMMA
FIKQVKQQSNPERVHHVSETVVAEKPRHSREQRVAQSTAGPMTRSRNNSPAVQETKRGRPPKFVYPKPAXSPDTSPPPKK
TAPTTHDLTQMEYSGEESEVSETPPNQRLR
>DOC5_DM_pol#LINE/Jockey 1925-4560 via tfasty with G2_DM_pol, 3 frameshifts and 1 stopcodon. [Drosophila fruit fly genus]
FYYSNLTNKHLTIAIWNANGLSRHLHELKTFLNEKQIEVMLISKTHLTEKTYYINIPNYNISSTYHPDGKAHGGTAVIIK
KSIKCIELDGFKKDYIQATTKSTSDTTGPINISAVYCPPKFNNTKDQYLDFLKSLGNRYLAGGDYNAKHTTWGVRDLPLQ
RGRQLYEAIRNNNSRALSTGEPTYWPTDTNKLLDLIDFCITRNITCENLTIKSCLDLFPDHSPILLTLHGGLEENSNDSP
LFKDKTNWNMFRDILEQNRNINISLKTNNALDSGVAYLNENIIDAATQSTPSIKMKxEKSGKSVHLWRIRQRTRHPEDKN
KLNRATDELKRTLREDKDNRLQYYLSKLETTLSTNYSLWKATKKFTNSTIHKPPIKRNNNTWARSNKEKADTIYNDNAEL
PRQITNLNCAIKTITKAEIKSHIKQIKNKKAPGYDLIGGKILKELPDAIITYIRNLFNGILRLQYFPITWKVGQIKAIPK
PNKNANTVSSYRPISLLPVLSKVFEKVLFEKLLFNRIEPILKQKNIIPPHQFGFRKQHSTVQQVHRVINKITDDFDKKKF
CYAVYLDIAKAFDKVWHKGLLHKLRNILPYNLYTILQSYITDRYFYIKYDNECSDIMPVSAGVPQGSVLGPILYLIYTSD
IPAPTTPGSMIATFADDTVLMSSSACEKTAASTLQQIMTQTVSWFERWGIEINKDKTQQVIYTKRQPKNFAIKINDNQIL
LHPYAKYLGLTIDSKLTWKQHILNKRNEIKNKFRQLNWLIGKHSKLELHNKIAIYKAIIKPIWTYGIELWGTASKSHLQL
IQRTQSKMLRIITKAEWYIRNEDIHNDLNIETVNETIKKNSKKHTNQLLSHQNSNLRQIPMTELEPRRLKRRTPTELNY
>DOC5_DM_gag#LINE/Jockey 211-1950 [Drosophila fruit fly genus]
MSASDAQNQKRELQAKQNKNNSYLSFTHISNYTNNYQSLHPQSDGRARSCSPALERPNNYSQHRSAECAPNSSARTPTTT
SAIPINTHSTLPLTAVTLSALPLWTLPLSATSETNTTTVATIATTTTVFYVSMPICSSSANIKTPSSIPASTKINKTQSS
LPNQQNLKLYRDNQSPNSSKDLLNNNKKQRNKAQTATQKTLKKYWLAEPHSSNRFELLAQDDEDENQTDNGTNATINTQM
QIEHKSAKPPPIYVQNVENIYALTTALNSLEETRYELKALSSNEIKIQPLETTHYHNILRLLKDKSTKYYTFRPKDQRGF
KVILRNVHHATDKDDIINELAQQGHEVINLHNIQRYDSKQPLPLFSIELKMKDNNKDIYKIEHLLHCKVIFEPPRPKRTL
PQCTNCQKYGHTKNYCTKDPTCVKCAGKHSSSSCTINTRSDRTSIKCALCSENHTANYKGCMVYKALQIQKYPTLRKKEI
PVTETTHQTTQHSTTNNVVSLKTPALSYAEVLNKNQVTSHQTNSTPQPTIVPDIQPASTQLSQTAQNDFDELKQMMKQLI
AQMTNMMNIFTLLLFKLDK
>FW_DM_pol#LINE/Jockey 1863-4547 [Drosophila fruit fly genus]
IMATLRIATWNANGVSQRKLELAQFLHEKHIDVMLLSETHLTSKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNRMKHHF
YKEFAENHLQATSINIQLDDNTLLTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVNPKGKQLYK
TIIKATNKLDHVSPGSPTYWPSDLNKLPDLIDFAVTKNISRSLVKAECLPDLSSDHSPVLIHLRRYAENVKPPTRLTSSK
TNWLRYKKYISSHIELSPKLNTESDIESCTCALQSILTAAALTATPKITNNTINSKKTNVQIEQLVHVKRRLRREWQSSR
SPTAKQKLKVATRKLANALKQEEDDDQRRYIEQLTPTGTKQKSLWRAHSTLRPPTETVLPIRNSSGGWARSDEDRANTFA
AHLQNVFTPNQATSTFALPSYPVNRHQQHTPIVFRPKEITKIIKDNLSPKKSPGYDLITPEMIIQLPHSAVRYITKLFNA
ITKLGYFPQRWKMMKIIMIPKPGKNHTVASSYRPISLLSCISKLFEKCLLIRLNQHLIYHNIIPAHQFGFRESHGTIEQV
NRITTEIRTAFEYREYCTAVFLDVSQAFDKVWLDGLMFKIKTSLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVP
QGSVLGPTLYLIYTADIPTNSRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIEKWLSDWRIKVNEQKCKHVTFTLNR
QDCPPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEAKKTQLKLKANNLHWLINSGSPLSLDHKVLLYNSILKPIWTYG
SQLWGNASNSNIDIIQRAQSKILRTITGAPWYVRSENIQRDLNIPSVTNAITELKEKYHSKLHTHPNHLARGLIQLSSRS
RLRRKDLPTQRINY
>Jockey-1_DAn_gag#LINE/Jockey 145-1314  [Drosophila ananassae]
MNNDEDDTSAWSWQTVRPKPKAIKRQNQVSPILLKEKIALAHAPSTXXNQYALLSDSTPNNGIEGESEALDLITEDTLDE
SAKPPPIFLSEVSNIKGMLAYXETKMKKELFFYKVQRDGQVRITVKSIEEYRKLXKTLSGDFVKFXTYQLKHKRAFRVVI
KNXHFSTDXDLMKQDVESKGHTVRNISNIKSRVTKEPLNLFFXDIEPNNKNLDIYKVKRIGNAVVNIEPPHKTKEIVQCY
RCQEFGHTKSYCSKTHRCVKCSLSHPSNICPKDKEQPPKCANCNEDHAASYKGCKVYQELISKKIVSGRNHLKNTKDDNK
GNDYATTQSFAPSNNSTQQPKDYQSYAQAAAGKSISNTSLERIEQLLEKQFELTNNLLNMIMLLVNKLCK
>Ingi-1_SPur_pol#LINE/Jockey 373-3341 via tfasty with Ingi-1_BF_pol, 1 frameshift. [Strongylocentrotus purpuratus]
MAPTDCRRKHASSSGRKVTVMSINTEGFSSAKQQLIGKLCKENDCVALCLQETHRGHQHIRPRIPGMKLAIERPHEKYGS
AIFVRKDVIIDQTSLTEEDNIEVLAVNMGKLTVTSVYKPPGSTFAFTEPQSFDYDLVNVIIGDFNSHSTSWGYEETNEDG
DLAEAWAEAHHLDLIHDAKLPHSFNSCRWKKGYNPDLSFTSERISCQTKKRVLEPIPHSQHRPIIVDITAAVVPQRVPLR
RRFNFRKADWEKFAIDLDEALSDLDPVPANYDQFVRTVQEISRKHIPRGCRENYIPGISAESALMYKEYIKLYEEDPFSE
ETLSAGELLMAAISEERRKSWQDLIEGVDMTHNSKRAWSTIKKISNDPKKSTPHSNVTADQVAHQLLLNGKSAHKKRHKR
NPWPQVDTESTWYFNNLELQTAIDSLKNGKAAGLDDIRTEQIKHFGHNTREWLLSLFDNCVTLSQLPKIWRKARVIAILK
PGKDPNEAKSYRPISLLCHLFKLFERLILNRLGPVTEQHLIPEQAGFRPGRSCTGQVLNLTQHIEDGFEKNEPTGVVFVD
LTAAYDTVNHRILLDKLYTMTKDSHLTKLIQMLLENRRFYVELNGKRSRWRKQRNGLPQGSVLAPVLFNVYTNDQPVYPG
TRSFIYADDLGIAAQSSHIDKIEATLSSALDNLTDYYNNNHLKANPAKTQVSLFHLRNHNAGRKLSLKWNDVSLKHCDHP
VYLGITLDRTLSYKQHVQKVKGKVGTRNNLLRKLANSSWGANSSTLRSTALALCYSAAEYACPVWERSSHAKKVDAALND
SCRCITGCLKPTNVDSLHTLAGIAPSDVRRTVASRTERSRQVEDTRHPLYSHQPAPTRLKSRKSFLHTVQPLSQPPHSTR
VILWEEKRCENHHHEKLPIPTKEQLPPGHNDDWKTWKSLNRLRTGVGRCKYNMHKWGYTDDTDTDCECGTSVQSMSHLLR
CPLLDDQCCLEDLVAANEKALQCAKAWQSI
>BS_gag#LINE/Jockey 322-2253 [Drosophila fruit fly genus]
ILRIIIKTMDENNSDDTQLLNKQSNHRTMFSIAGKLPHEIRNECRSAIQRFTSSVTQSSSVTTTTVTFTSANNSTIYTMA
NAAISSPCLGTRSTHQESSTLINSGIVEDNLSDAARRLLNDQNQRAGKRKNGKPLSPISNPKRGSSSQVLHSPPTTSLKI
STNNRFAILDTDISTNEESVEGMMIEGADIDSAHMDDSQLDGSNTGRNLQETHNTANQLNDHKKPPQIVVNIRNLNDLFE
LIKEKTSLDNVVVKANQGETVRIFPKDSDTYRKIVSHMDDIGIQFHTYQMLTDKPHRIVVRDLHHSTSNKDITADLKCLG
YEVLHIHNPSSRTNKDEKLNIFFINIKPCAKINEIYHVKTLCRQKIRIERMRKSSEIAQCRRCQEYGHTAKYCRRHPNCA
RCGENHQTMQCTRPIDALPTCYHCSENHTASFKGCLKYQELLRRSMGPARNGNRLNKNTHHHSPRDRQELPALQPNYRKN
NTQSTVQQLSTQPQLNFAQSQPSIGTGGNRAVSYATIVKGYPKIAPSKDGPAQRLRLNNPQTKQICSNTRSNTQQNNSSD
VQVFLQQQQQQFLEWQQQIQQQQHQQFLMWLQQQQQEQLQYKSQTNQRLEKLEKMVLELANMLKEWAGSELNPQLFNNVS
ASL
>Nimb-1_DPu_gag#LINE/I-Nimb 250-1956 [Daphnia pulex]
MNEEEIRAAKAAAASARASLAPLMLNEQGIAEEPEPDSMEEDLFEELRTEEQEATTEAEKEEQRRRRKAAADKWLRDKGF
TMVQRGKKGEPSNKRGRKDIETPSPAGETESSSLPSRGKPPPIPPRRSEATTESSQQVKQPPANRMTTSFETRLVAKEND
MIVDLKKVSPILINKRLSEQVSKGSVSSWKINPGGSLTVVATGAAEILEVMAIQTMGSWTISVVPKTCKGVVHGVHHLIT
KEEFLEEASAVNQGNVVKIVNAARIESRPGGPYKSTSSVIVTFEAAELPDSVKILNSIHRVTQYIPEPTQCYKCRRPGHI
AKECGGKQRCARCGGVHLTKDCTVTREHWKCPNCKGPHSAAFRGCPQWKEAKAVIRIAVVENIPRSAAVAKVRSGQTYAA
AAKATDQSDTQKEKTSEPNNAGSSDKSPDKNAQTTEPLQKVAQQKGRKDKLSSAEKKLEAFMKIMAQFMDILSAYTNNQH
LRTLAGAAKALLTHESSDNSDSSKDDQSSDSDDVEEEEITPALFTTGIQKTPEKKKKNKKKKKNKRKKEDDPAADSTASV
QTSQSKDAT
>Loner_Ele4_gag#LINE/I 535-1830 [Aedes aegypti]
METDGDGTSGENSELSSTKRFRIKTYPSSFLGPFVVYFRKKEKPINVLLISSEIYKLYKSVKEIKKISLDKLRVIFGSRD
DANSLLESKLFCNSYRVYAPCDSCEINGIIYDEDLDCNDIVNFGSGKFKNKAIPPVKILDCMRLSKLTFSDKKSSYMHSN
CIKITFEGSVLPDYVDIDNVIFQVRLYYPKIMHCDRCLLFGHTSQFCSNKLKCSKCGEGHSSVDCNKSSDICIYCGKKHN
FLKECSVYIAHQTQSNHKIKNRSKLSYSEVTKTISDLPSTNMFAPLSQNVDNEVSNDDHEHFVYKPPNKRKRIIKSIIKN
DDFTNPQPSTSFDTNFPPLSSPTSRVIPGFQKNMTYSEENSNEKNNNSNSTFQKTENSGEDNSILHILEELIEFLGLNEF
WKKIIKIILPFLASIFEKLNSIGPLICSLFSS
>55239464_Aga_pol#LINE/Jockey gi|55239464|gb|EAA10695.2| ENSANGP00000020881 [Anopheles gambiae str. PEST]
IRNTNFASKVEQLPPHSPAFWKMAKILKDKPWPIPPLKSNLPAHVVITPIEKSNALANQFAEAHRLGLTMTSPHDVEVST
TNSTVDNAPPTLPPEERITVAEVESTIKCLQNMKAPGFDRIFNICIKHLQNRAISLLVAIFNSCLSLNIFPQAWKSAKVI
PILKPGKDPTLPSSYRPISLLSAFSKLFEKIIYCRLRSSVNDLQIIPVEQFGFRSGHSTTHQLIRLQNTIQQNKRVARST
AVVMLDVEKAFDNVWHDGLVHKLYQYKLPLFLIKLIKNYLQHRTFRVVIGPYNSDVQHVPAGVPQGSVLGPLLYLLFTAD
LPALPSGAQLFLFADDTA
>BS2_gag#LINE/Jockey 304-1827 [Drosophila fruit fly genus]
FGAHFNMNTLNETAAADESLDTAFLSSPQCAAPQRFQKIKRKSRASPETERKKPKSTIGKQGENPSATEPRYGGNSNRFG
LLAHLTADKQVGNEIGDLYDQPSTSHQAAIAAAKRDAASAGTTSSAKRAQSKPPPIVMEGVDDVYLMMQSIENIVDLEKI
EARASMSGVLRLYAADANTFRTIVNWLEIEEYEFHCYQLKEDRPYRVCVKGLHHSTLHHQIKDELEKIGHKVLDIHTPLR
RNEPGTSKASPVNMFFLNIAAAANNKEILAVKALCHMRVVIEPLRKRNAIVQCHRCQQIGHTAKYCRKAHICVKCAGEHP
AKDCTRPRIELCTCYNCGGQHPANYKGCSKLQAFLQRSRPRSGVAGRTEVSDRPTPRGLAGGKEIPSSRGGISYADVARG
SIHHKQPMSLTHQQQKQKQQPYDGSPSRQRSRSRTRASRGTLQRSTDASSSIEAILQTLNENINSLRSIQEKQMELMMMM
MKQQQQQSHQQGQIINLLTALQARQAP
>Ag-Jock-12_gag#LINE/Jockey 81-1385 [Anopheles gambiae]
MTKAKKKKREDTSPTVSDEGVNSAKHAPDKRAKIDGENTEEENEVEDNDGFVCVERRKGRTVSPPPSTAPSPAAGPHKLS
QRLPPIVVSNPRFQELQKMLAHIAKVEYQIVGVGTKVWTRNEEDYKAILTFLQTADCEFYTHDLPRDRPFKVVVRGLPLS
DEKDIRDALEAEKLQVDAVYRIKRRHEGNGDSGSCLYLVHLKKGTITLAALKEIRALLSIRVHWEAFRGGRRGVTQCLRC
MGFGHGSRHCGMRQRCLNCAQNHNVADCTVVPPTVPKCANCDGNHKANDPECPQRARFQTIRQQATQRRPKTSAHGRNMV
PPPPLSSYPPIGRNGSNAASAALAAPAAGVRAPVRDKTPAIVPRIPPGFQYSTALRMAGTDQTASQPNVSSEETALYDAA
TLMQIFSTMVERLNSCRSRREQVAVIGELIIRYGC
>CR1_Ele16_pol#LINE/CR1 1623-4520  [Aedes aegypti]
MFPTSHLSSTPAKSKISVYYQNVGGMRSKIRSFFLTSVSLDYDVIVFTETWLYDGIRNSELTEEYTIYRCDRNSASSNFT
RGGGVLIAVRKTLPCSSVHLHDSEHLEQVAVSIELPRQYVYVCAIYIRPNSDPTIYSTHSSSICQILDMANTDDSVVVVG
DYNLPRLTWHFDDEVDCYLPINASSEQEITLTENILASGLKQICDVTNENGRLLDLAFVNTVAYVECIEPPSAILRVDRH
HTPFVLRIDVQHNDEPEPPPSPSDDIFDFNRCDYDALIDALSQYDWNVMLLGLTTDEAVSRFYDTIHDLLRRFAPLARRH
TTRTNRKPWWNSELQHLKNVLRKARKRFFRNKTVQNGLSVRRLEDELKSKMDLQYRMYLGNLQDDLKVNPSNFWRFIKSK
RCANTIPSNITYHGQSSHSTVEATELFAEFFKTVYSSPISTISDDYLQSLPSYNIHLPPISVTSNDALASLKRLDPKKGP
GPDGLPSVFLTRCAVQLATPVSLIFNKSIAEGTFPRAWKSAAVTPIHKTGSIHSAENYRGISILCHLSKVLESIIYDKLY
AAAQPILSEFQHGFVKKRSTVTNLLSYISTLNSSLEKRLQIDSIYIDFSKAFDKVPHELALKKLDRLGFPVWIVQWLRSY
LSERTSFVKIGCHKSESFRTTSGVPQGSHLGPLIFIIFVNDLCTYLESCKLMYADDLKLYRIVTSVLDCVALQSDVQRLE
EWCSLNGMEVNASKCKIIRFNRTRSDIVFDYKLMDKTLEKVTSIRDLGLIVDNKLRFSEHISATIAKAFVVLGFVRRNAA
DFEDVYTLKALYCSLVRSILEYAVQVWSPYHAIQANRIERVQKKFLRFALRRLPWNDPLRLPPYEQRCQLISLETLASRR
TLSERMFVFDVLSGNLDCPELLQRINFSVPSRSLRRHSALWLPRHRTNFGENNPIDRCCRKFNEIAHLHEFGXSKNVFKC
RIRNVL
>CR1_Ele15_pol#LINE/CR1 1582-5520  [Aedes aegypti]
MSPEARDDATHILNQVKKFQSNENSTNITNSTDTQRVQPFADFASADLSRAYHSAKLPVSPGELYSGICLAEAGKNAAPN
LVRVSNLQPLHVSNYRRIDDQPFIEFSSADNSSACHLAALPVSPGKFDSGICPAEARNDAAPNXSREINLQLIGNLATSI
NGTEDLYFQPCLQVSEEFTTRFIRSGDHSDQHFGEFSSSDDPGAYHFAALPVSPGKFFSGICPAEAGEDTTQNLNRVLNL
QSTEHPIAYINPYGEHHIHPFAKSADVSTAYHFAALPVSSGELYSGICPAEAGKDAAQNMMRYPNFQQHHETATCIDQTD
RAVCESSSNDHNIILPTINARNGFNDKKCSLLVYYQNVGGINTRVCDYRLACSDSSYDAYAFTETWLNSDTISSQIFSDT
YSVFRLDRNPQNSLKNSGGGVLLAVKASFKPRQLSVPNSEAIEQLWVAISFQTNTLFICVLYIPPDRSHDMNVIDQHVSA
FNWITDKMKIKDSLLILGDFNIPGIRWKFSTSNYLYPDVTSSSIRSSDATLIDSLNMARVSQLNYVVNHNNRILDLCFGS
IDGDVRFSLIEAPSCLVKPTTHHPSLLIEVIGATPCVFVEPVESLYNDFKHGDYSGMNTFFSNINWLDVINQDLELSVAT
FSNIVLYAIDQFVPKRIHRPPTNPPWSNYRLKQLKRLKRSTLRKYSKFKTLSCKLEYHAANVRYKRLNEKLYLSHQRKIQ
QKLRHNPKAFWNHVNEQRKESGLPTAMFKDSVEESSTEGICNLFLSQFSSVFTSEYLDEQQVFLAANNVPVYPPVGDHPF
VNSEFVCKNCSALKASTSCGPDGIPAIVLKNCSSILSVPLSQLFNLSLQAGSFPECWKKSFVFPVFKKGNKRDVKNYRGI
SALCAVSKLFEKVVHNFLLHNCLHFISEHQHGFMPKRSTNTNLVAYTSFIAKELQKGHQVDSIYTDFSAAFDKINHQIIV
AKFSRLGFSGSFIDWLKSYLTGRKMAIKIGDCTSPYFLVTSGVPQGSHLGPLIFLVYLNDVHSLLKSFKLSFADDFKLYC
IVDDVNNACFLQSQLDAFTVWCKTNRMELNADKCSVISFSRKRSTFNFDYKIGSTVLRRESVVKDLGVLLDSKLSFKEHI
AFVASKASKTLGFIFRVAKQFKNIQCLKSLFCSLVRSILEYSSVVWAPYYQNSISRIEAIQRRFVRFALRHLPWNNPTNL
PIYEDRCKLIGLELLSVRREISKSLFVSDLLQLKIDCPHLLSLLNFNVPHRPLRSSTFIFLHGARTNYGYNEPFSAMCRS
FNRCSHEFDFHIPRTTLRTKFSQIISESHQNSR
>CR1_Ele17_pol#LINE/CR1 1615-4588  [Aedes aegypti]
VSEELTTTATSVHHAISHIIPPSFPVPPSPTVTPFPRAPIVPLTIYYQNVGGMRTKTNDFHLLTASCDYDVIVLTETWLR
SDVRNTELSSDYNIYRCDRSSMTSRFQRGGGTLIAVKKSVASMAVQLDRSDSLEQVAVKVSSSNKSVYVCGIYLRPNSDP
GKYAAHSDCVEQIINKTSFGDSVVIVGDYNLPHLLWSYDDDVNSYIPTNASTEQELSFAENMIATGLQQICNVRNSNGRL
LDLAFVNSSEVELLEAPSAILPTDRHHKPFVLRLATRSASENLDVAVGQDFDFRRCNYEAVIDDLHLLNWDEIFNGANIN
EAVDTFYTLVFGIISRHTPLRRTNPQRSNYQPWWNSDLRHQRNVLRKARRRFLRHRTEXNKSFLRSLESEYNECVSSSFR
EYIFRIQDEVKADPSSFWRFFKSRKDAQAIPSEMSYGDSLSYDIEGSVELFADYFKSVYNVETPPDPHEMLNSLPSFDIH
LPFPTFAVAEVVSALNSVDPSKGPGPDKLPPVFIQRCAEVLGPPVCRLFNLSLSEAVFPDAWKVAAITPIHKAENIHDVK
NYRPISILCCLAKTLELLVHSRMYAAAMPVISQYQHGFVKNRSTATNLMVFASAVNSSLEKRCQVDGVYVDFSKAFDKVP
HELAMRKLERLGFPDWLVKWLRSYLRDRTAFVNLRSTKSTSFATPSGVPQGSHLGPLIFILFINDLSHRLNSKHLMYADD
LKLYRIISSMVDCAALQQDIDAVARWCVMNGMEMNALKCKVISFTKSRSQLSFNYTANGVSFERVTSIKDLGVIMDRKLN
FAEHISKTTTKAFAMLGFIRRNASDFQDVYALKTVYCAIVRSLLEYAVQIWAPYQETHITRIEKVQRCFMRFALRRLPWN
DPLRLPPYENRCELIKLEPLRTRRVFLQRMFAFDVLTNRIDCPDLLQQANFFVPARRSRPRSLFWTARHRTVFGQNHPME
RCFNLLNVDVFDFDVSRNKFKARIRLLH
>CR1_Ele39_pol#LINE/CR1 1313-5107  [Aedes aegypti]
MMEAPNLPNSVAPSAVFAHHSRLGPEVGGGNGVFHPACPGKYFSNKSSSAELSLPQIESNSRTVSTADSILNFWTLRRTI
GHASTICGHPGRTNESILGGSCSSNSVAPIAASVLHSRPGPVVRCGFGVPNLSCQASTTSTVHRAIILRLILVRLXVLYD
QLIPHHIRSTFTAPASSHELHCGPPGRTVESFLGAPSSSISVVPIAASVPHSRPGPELRCGMGVSQLAFLGKYNGFCDNS
LLDSDSHSSTTEITPTPTSHQAGIINRSLPTSTVSSNLSGRDSKEADSHRFSRRSDIDNHRSAVCRKHZLVIFYQNVGGI
NSEVNNYYLAVSDTCYDVIVMIETWLDDRTLSNQVFGSDYEVFRCDRNPHNSRKSTGGGVLIAVRRGLKAKIVEDDEWIS
LEQVWIAVELNDRKLYLCAVYIPPDRIRDIDLVRTHCRSISSVVEMSSPLDELMVLGDFNLAGISWKPSHGGFLFPDSRQ
SVLYPAAIHLLDSYSASTLSQINHVLNENQRSLDLCFVSTQDTAPFISEAPVPLVKHVSHHPPLIVNIPKCLDRDFIDFP
EPVSYDFRKADHRSITDVLTSLDWDVIFDTDDANSAALTFSHVLGYVIDRHVPKRSQQLNRLPWQTSELKQLKTIKRAAL
RRYTKYRTVSLKIQYVRLNYEYKRISRLCYSRYQQNIQGKLRSHPKSFWKYVNQQRKETGLPSSMTWNNLTASDPQRICQ
LFSSKFADVFTDETLTDGQIAIAATNVPLYAQTLSTIDISVEMISTAASQLKPSFNPGPDGVPSAFLKKHISNLLMPLHR
LFRSSVSSGIFPSCWKIAHMFPVHKKGSKRNMDNYRGISSLSAVSKLFELIIMQPLLSHSKQYLSDDQHGFMVGRSTTTN
LLCLTSFITESMVERMQTDVIYTDLSAAFDKLNHSIAIAKLHRLGVSGTLLQWFRSYLSGRQLMVTIGDCTSETFPATSG
IPQGSHLGPLIFLLYFNDVNLVLEAPRLSYADDLKLFLRIQSVNDCHFLQRQLGIFANWCSINRMLVNPEKCSVITFSRK
KEPIYFDYELSNTTIKRTTHIKDLGVILDSQLNYKQHMSYAIDKASRALGFIFRMTKHFSDVHCLKSLYGSLVRSILEYC
SPVWNPYYNNGVERVESVQRRFLRFALRKLPWSNPFRLPSYEDRCRLIGLELLRVRRDTSRALLVADILQGRIDCSYLLQ
QININVQPRALRNSVMLRTPLHRTNYGLNGAIGGIQRVFNRVSASFDFHLPRSTLRRRFVSHFAE
>CR1_Ele29_pol#LINE/CR1 1493-4417  [Aedes aegypti]
MLSTPYLIPHNTSPTCSTSGSQSFPTSLTVYYQNVRGLRTKTNNLLLSLLTCDFDIVVLTETWLHSEIASSELTCNYVIY
RCDRNSSTSNLRRGGGVLIAVKSELNCKAANLTSPVDLEQTIVQIVLPHLSVYICCVYIRPNSHPDIYTKHVESVDQVLK
EVNAHDIILCLGDYNLPNLTWRFDEDLSGFLPTNVSTEQEIALVEPMLSTGLYQINDVLNVNDRLLDLVFVSDPCIIDLF
ESPSSLLKIDAHHKPIILSLDARSRHARLQSSPELSADYDFSRCDYHAINNLIASQDWNQLLDQDSVDNSVATFYHVINR
IISETVPVKAKRSTKSFRQPWWTPQLRNLRNRLRKARKRFYRNRNPTTISNLKTAEDDYLRLQHNRFREYVNSLQSNFKQ
DPSSFWTYINKRKSSATIPADVSYRTRSAGSPEENANLFAEFFRSVYVENPPPISQDYVNSLPSYNIQLHRVTFDGDSIR
AALSKVDASKGPGPDLIPPSFIKQCAQSLAAPIASIFNRSLIEGVFPEAWKLASITPIHKSGSVHDVENYRPISILCCLA
KVFETLLHDALYPVVQPAISESQHGFVKKRSTTSNLMTFTHAVFDKLEKRSQVDAIYVDFSKAFDKVPHNLAIAKLNRLG
LPCWTIQWLKSYLSSRKAFVKVQGARSDIFGISSGVPQGSHLGPLIFVLFINDLCDQLDCGKLLYADDLKLFRTIKTLLD
CCALQADVDRVSNWCDLNGMQMNANKCKVISFSRRQSTTVFDYSLNSSSLERVSSIKDLGVILDSKLRFHEHIATMTAKA
NAMLGFLRRNTQLFDDAYALKSLYCALVRSVLEYGVQIWAPYHAVHVESIERVQKRFIRYALRGLPWNDPAHLPPYEHRC
ALIGVQSLANRRTLLQRLFVFDVITGNIDCSSLLANVQFHAPARQLRNRQLLWIPSHRSLYGYNNPLDSCCRLFNDVCDV
FDFNISKLVFKNRIK
>CR1_Ele13_gag#LINE/CR1 702-1529  [Aedes aegypti]
MPSVCEKCANDLVGEIIKCGGFCTGQFCLRCSKIPSELYPTIKTHQHLVWMCDACRNLLKNSRFTKAMTSISAANDCIVE
ALKTDIRDSILTEVRNEIRSSFKKMIDSVPLTPLNPIPLQLPFSSRKKRPRDAENEDENNRRPAKLICGTSSSSNAVVPT
VNIAEPRQEQFWLYLSGIHPSVPDENIKQLAQESLGTNELTVAKLVPKDKDIRSLTFISFKIGMPSNLKEKAMSATTWPI
GIKFREFESAGTTQPVFWIPPVTQPETNNPTAIQSM
>CR1-37_HM_pol#LINE/CR1 1032-4063 via tfasty with CR1-19_HM_pol, 1 frameshift and 2 stopcodons  [Hydra magnipapillata]
MIPFGMASVAIKSSNLKRNQINKFPQDLVSDGIEVEKLSCLYLNATSLDNKLNEFKVVIEQYKPNVVAVTETWFNNNSVV
NVEGFHLYRKDRLDGRRGGGVCLYIDNLIDSYELNDAGLNLCKLEQVWAVVYFGKDKYLLGCIYRPNDFIDMSEFHVVFS
RAREFIDKNKFKDFLIMGDFNFPSISWANGCVDVISNENGIEHKFSDILNENFFYQHINIPTFQLSDDQLINTLDLVFTT
QSASVSLIDSKFVLGNIKRGHLIICFDFILADKAVSDYKSKQRFMFAKSKFDKISDLISNVDWIRCFSNKNVQEMFDELI
YYTEVACNHFTPTKMTINSLKIRPAWVNASLKFLIRSKQNLRYKNCSCKWKDPVLKFEYKMICKKVEHEIKKVRQNFEYD
LVKRAAKNPKLLYKLHNQCTTTTxSFCTATxTINKLLYSYINNQRAVRDSIKALKGTDGETTQNPKYVADILNKNFQAAF
VREDDGPLPYFQIRTNETFIMTTEDFKYEDVFLRLKNLKENKSSGVDNLHSAILKNCASAFAIPLTYIFKESFETSKLPE
QFRSANITPLYKKGEKTLAVNYRPISLTSIACKIMEGIMRCKLEIFLNEYKLIVKQQHGFVKSKSCTTNLLDTLDFISTS
LENGKPVDVIFLIFVRTRAFDTVPHKRLLLKLAAYGISGLTIKWIEAFLKNRKQRVVLGENVSSWAEIISGVPQGSVIGP
LLFVLFINDFPETLKNISMLYADDAKIMNEMISYKSTVSLQADLDRAFKWTQEWLVKFNISKCMVMHYGINNRKTPLYIN
KQKLNVTESERDLGVIFSNNLKWKNQVISCVGKANQMLGMIRKCFVRLDIRLLRSLYVSFIRPLLEFAVPVWSPNQKGEI
DLLERVQHRATRLIPSLKKINYENRLKALDLTTLTNRRKRGDMIQLFKIFNGFNKLETKRKFNFQQTQTRGHRFKYVKEI
TKQAHRENFFFNRSANLWNSLPNDLVNSETVNSFKAGLDCWMSSSQANQLS
>CR1-35_BF_pol#LINE/CR1 3-1229 fragment  [Branchiostoma floridae]
TDAQHGFVPKRSCTTQLLVVMNDWSQCLERGEPVDSIYLDFKKAFDSVPHKRLLVKLHSYGIRGHTLKWIQDFLSNRRQK
VVINGAHSSWRNVKSGIPQGSVLGPTLFVVFINDLPEVVTSAVKIFADDSKIYRPILCKEDQEALQRDLQAVEKWSEVWQ
LPFNAGKCKVLHLGRGNQRAEYRLGGLILEETKVEKDLGVSVDEQLKFHVNTTVSAQKANQILGLVKRTFSNLDEVTVPL
LYKSMVRPHLEYANAVWGPHFKVDQNTVEKVQRRATRLVPTLKSFPYSVRLESLKLPSLHYRRARGDMIQVFKFLTGRER
VSAQSFFTESQHQSTRGHRFKLTVPLAKSLVRRQSFAVRVVQNWNSLPAEVVEAESVNAFKTRLDLCWSKKRYHDRQEGD
YTGAAYFT
>CR1-60_HM_gag#LINE/CR1 101-826   [Hydra magnipapillata]
MAPKVDYVSRKQLEDLITRVSELERKDIENLSKIDKLMSENVLLTARVKILEEKQTNSILDWSKLFNNKKCDKSTEEIKV
TQGIIDLSKDVSKRDKNIIVFGIPNSTDSDAGNRKTFDENILKNLFSEIKINPDKIRRIHRFKNTNENNTKMETSTPLLV
ELPDSSDKFAILKAAKQLKDSESFKKVSIQPDQNELERKFTKSLILKRNKLNEELNLKGQLNNPFRFGIRNNEVKKIRTN
>CR1-C_pol#LINE/CR1 1515-4543 [Gallus]
QGFKLDMMGEGGVLGDREVRGNAVTLGGGKGKPQTCPGGIREGSSEKATRPIAKLKCLYTSARSMGNKQEELETVVQLGK
YDLIAITETWWDESHDWNTLIEDYRLFRRDRQGRRGGGVALYVRKWIDCEELCLRNSHDQVESLWVKIKDRSSKGHLVVG
VCYRPPDQGEAVDEAFLLQLQEVSRSRALVLMGDFNHPDICWDSGMAGGRQSRRFLESVEDNFLVQVIDGPTRGEALLDL
VLTNAEESIREVKIGGSLGCSDHALVEFVILKNAGLAKSRARTLCFRRANFRLLKELLSGIPWETVLKGMGTEQSWQLFK
DTLLRAQRLSIPQQKKSSRGGRRPSWLCKDLQLKLREKREMYRKWKQGCVSWEEYRAVVRVCRDRIRKAKAQMELNLARD
VKDNKKGFYRYIGRRRQAKESVPPLMKGNGELASSDIEKAEVLSECFASVFTGGQASRVCQDHEPLGEGVGSGFCPTVTV
EQVRVLLMKLNVYKSMGPDDIHPRVLKEMADVVAEPLSIIFEKSWLSGEVPGDWKKGNITPIFKKGRKEDPGNYRPVSLT
SVPGKIMEQILLEAMLRHIRDKEVIRDSQHGFTKGRSCLTNLVAFYDGVTASVDGGRAVDVIYLDFCKAFDMVPHHILLS
KLERCGFEGWTVRWIRNWLAGRSQRVVINGSVSGWRPVTSGVPQGSVLGPVLFNIFINDIDDGIECTLSKFADDTKLSGA
VDTLEGREAIQRDLDRLEKWAHENLMRFNKAKCRVLHLGRGNPRYLYKLGEDLLESSPAEKDLGVLVDEKLDMSQQCALA
ARKANCVLGCIKKGVASREREVIVPLYSALVRPHLEYCVQAWGPQYRKDVELLERVQRRATKMIRGLEHLSYEERLRELG
LFSLEKRRLRGDLIVAFQYLKGAYKQEGERLFTRVDSDRTRGNGFKLRQGRFRLDIRRKFFTQRVVTHWNRLPKEVVDAP
SLEAFKARLDVALGSLVWWLATLHIAGGLKLDDHCGPFQPRPFYDSMIL
>CR1-69_HM_gag#LINE/CR1 74-748   [Hydra magnipapillata]
MVNVQSTEFNVYKADQDKLIKSLIKTIDELKNCNLLLTERLNVLEKAKVVPSTSISWASVVSGNMPPKRSTEQLHLMNAV
VAEAKEREKRESNVVVFGIEASKKADLLSAREEEKNSILHMMNSINAKIEIKQIIKLKSKSDKESPFVIVLNNRNDRNSF
LKAAKSLKNSTEFNKVFINPDLTVAERYKAKLLREECKQKNLENSEPSLFYYGIRNEKVIKISK
>DMCR1A_pol#LINE/CR1 1400-4294 [Drosophila fruit fly genus]
TSLTWPDHCTIRLFIFFLFKKLTTNLTISYQNVRGLRSKLTKLYCDSLSFASHIIVFTETWLKPEILNSEVFPGMYTIYR
YDRPSRRGGGVLIAVRSTLASEELLLDESRNSEFLCVKLSFSDRSVYITCSYIPPSSEFPEYQNHLSAIQSILNKLSDRD
QLVVLGDFNIPGTMWSPEKQSNILLPLAQHDFIDGLLDLSLSQVNYIPNSLGRLLDLCFVTSPESVFLSRVAPLTQPEDP
YHPTFEVAIDIGTVLKVNSEKSTKRIPCFRKANFRRLNNFIAGFNWSDLYSCNIMADAINMFYTAIKSFFDSCVPMYYPS
ISKPPWFNKELTHLRNVKSRLYIKFKNTGSQSILCKYLSARLNFTVLNAQCYKNYLNRCKFQFAQDPKQFYNFVSTKRKT
SSYPSSLFFENTTVTSDQAIADLFAKFFQTTYSTLPHSEQPYSYAVSKSNLIFCPTINESSLLNDLQRVKPVYSPGPDGI
PGCVLRFCAEALCKPLLKLFTLSLESSQFPHIWKESFVIPLHKKGSKLDASNYRGISKLSAIPKLFENVITPHLQHLCRS
IISPCQHGFMKRRSTTTNLLELTSFVIQGFKNNLQTDVIYTDFSKAFDSVNHYLLIRKLDLLGFPVDLLNWISSYLNGRT
QQVLFKNSLSCILRVTSGVPQGSHLGPLLFTLFINDLPLIIKHSRVLMYADDVKLCLQHKDTSCHLDLQSDLDRFQIWCR
DNVLDLNGSKCKVMTFCRANPIRTTYTLSGCSLDRITRVDDLGVLLDPKLKFSDHISSIVNKARGVLGFIKRWSKEFDDP
YLTKTLFISLVRPILEYGSPVWSPQYAVHSDRIESVQKNFLLFALRRLNWDANRILPPYSSRLLLINLPSLANRRTMLGT
VFICKLIRGDVESPDLISRLNFSVPSRFTRNYIPLILNHCRSNYELHDPYRVLCSDYNRLYPIICNLDSLPLLKQSILTF
LLHN
>R4-1_AC_pol#LINE/Dong-R4 159-3569 [Anolis carolinensis]
MENQTQTKSILARSSPRIKRTAVDAADSGHPSTSGLRNHQNPNEQSQKRQKYTMPENRTIMKCYYKSEPQRRGYQKRMHQ
LWKQEYPDSQITEPRLADQRRFIIRNKVFSEVELEEIQKICKVDYHQTTAQTAAETPATLGMVEQIEPEESVALLQEFEE
PALETSVEPPGTLTARQQELKDKIMAHAAANAIRQRLPTLKTVPKRHLAPLMKDVNAALSTVQITSIEQTNQFAYSAAVI
VTEELGLLQPRQPQRKSTGKPKWKVRLELKIKKLRSDASNLKNMKERKLKNDKIKQYLIRKYWLNTRKIEEALEIVKEQI
TATARKIERYEARIIQYRQNQLFQSDQRRFYQSLNQTTDTVTIKPEKTATTKFWKELWENNKNYNKNAGWIKEFEGKFSQ
NKMELMEITTEMISKRVQKVKNWTSPGSDQLHGFWLKHLISLHGKMAQQFNEMLQKGSISEWLTTGRTYLIQKDPAKGAA
PGNYRPITCLPTMFKLLTGIIADRIQDYLEEKNILPDEQKGNKRKSRGTKDQLLIDKMILENCKSRKANLHMTWIDYKKA
FDSLPHSWIIKCLDAIGICKTVGTFIENMMEHWKTELFVGNESYGLVNIRRGIFQGDSLSPLLFIIAMIPLSTILQKTNL
GYQISKNSHKISHLMYMDDLKLYGKTETEIQSLTNTVRIFSTDINMEFGLDKCSTVALKKGKIIESEGINMPNGQTIKCH
QPEAYKYLGILQLDNIKHEHVKTVVSKEYTQRVRKILKSKLNGGNTIKAINTWAIPVIRYTAGIINWTQVELDNLDRKTR
KLMTIHHSLHPRSDVDRLYLPRRSGGRGLLQVKQAVKEEEHALAEYVKQSEEPALIEVKNQKLLKTQQTKNQYKKTALQT
RADSWHNKTLHGKFLDKIEGKADKEKTWLWLTNGTLKKETEGLILAAQEQAIRTNAIKAKIEKSADDPKCRLCKETDETI
DHILSCCKKIAQTDYKQRHNYVAQMIHWNLCLKYHLPAAKNWWDHKPAKVLENEHAKILWDFRIQTDKVLEHNTPDITVV
EKNKVWIIDVAIPGDSRIDEKQQEKLSRYQDLKIELQRLWQKPVQVVPVVMGTLGAVPKDLSRHLETIDIDKITICQLQK
ATLLGSAHIIRKYITQS
>57226582_Cne_pol#LINE/CRE-Cnl1 gi|57226582|gb|AAW43042.1| hypothetical protein CND00010 [Cryptococcus neoformans var. neoformans JEC21]
MAENGFKMLGTMVGPKKAREEFLKSKMESEVKKIARLKDLPNQHALLLLRFCIQQNLRHLQRSLKSDDLKDYWEKMDQEL
WDEVQRMRTRQTEGTEAENALGKKLSHLPARFGGLGLLSFTDVAPLAYKAAAAQADKHLANIFGLDLPDEAPTPSQRELC
SSMWEHQQTTILEGLNDPARKRLIENASKIGKRWLNVIPYFQPLRLSNQEVATGLHDRTLVGSSIAICSFCGSDSPLGHD
ELCRSRNSWAQRRHDSINRIIHRGLQSVEGAVVSLEPRTLEGQRRNDLRVRGRCGLHATDYDLKVYCLNDRDARSTLSAK
LPSTPVATHVLNRCLSWLDKVSEIATKKAPATHAGVFKAVVMSTGGLMSRETADEMRKWRREMGHMAFEGMMRKMSLELV
RARARTFAM
>DINOLT1_gag#LINE/DRE 223-1584 [Dictyostelium discoideum]
MNKLANTIMTESTETLADKIKKSNELRTKFKYLKNTYRTLDKISEAIYHTQIELKQYKFMINIPDEISNNLKAELEIHLQ
GDDKIIISKNKFKILTDCRTQVIKYSNVFNGVLKGVHRAIIKPKKIFKTFNWEKSMDIVEKTLHEEGLEIIKLDNLGENL
IIHSFNSIISPEHKDQLIHCKHITILFLTTTEETKNQRKTNKEIEDEISENSKITELPNPEIKENTRINIKSKEESNHKN
TSESKNNNKNKIENRKENNKEINNDNIKDKSKNEKVKENEIENKKPTTIRATTTTTTTETTNTINNIEKRKVLRVPPITV
TYSVDSKEKRKMELTEDEEALEVVRKMFENEEENRIFEEKINNQKKKETPRLASIKKRQTMSPIQNPESPATPETVKRKR
SNSSPNPTTNHQEISTPYKTPTKITKEESDLMEAALRDKLPKVLQDILPSVSFV
>I-2_DR_gag#LINE/I 462-1673 [Danio rerio]
MANKQNPKRKLSDQDLDCNFGNGISLLPKSENWQRFILLESLQSDMPLSKLSPFAIQKGISGIAGTVKDCKKLRSGQILV
ECSKKVQAENLLRANMLAGVAMKTFHHPTLNHSKGVIRTRELEDMEETEITTELMTQDVIHVKRITIRREDRLIKTGTYI
LTFSRPLPPEKIQIGYLSVNVDIFTPNPLRCFSCQKFGHGSISCKNRPTCVNCGEEKHGDQCKKTPKCSNCAGEHPSSSK
DCPTWIKEKEIQKIKCTKKVSYLEARKLVENSSFFKLEKTFAAVMKPKLQSVGVQTDLTWINEKFEEIKSQTPVNTKCTD
HQSQTVLHQTQVNHKEHSSTGQHSSKNKNDKKPNPQKEKTSQEYKEMKTSSSKDIEMSDDKKPRSRSTSPKTKTKGHSYV
LPT
>I-1_DF_pol#LINE/I 1430-5083  [Drosophila ficusphila]
MTLIIIQWNIKGYMNNYNNLLILIKKYSPHIISLQETHIQYTNNIPIPINYSLLTNHATNRFGGVALLIHKSVQHTTLSI
PDDHEALATHIQSKLNFNVFSTYISPNTSVTSQSLENTLSSQQTPSLLTGDFNGWHPSWGSPTSNSRGKIVQRFIDNSQL
IILNDKSPTHFSTHNTFTHIDLTLCTPSLAPHAKWEILNDLHGSDHFPILIHLFPTTDTPKFNRPFFKLKEANWVQYNKL
TQDINDKFPPSQLVNKEAAQVNKIILYSANLAIPQTSPNIKPYRVPWWNKKLDQLRKEKQSAWKTLNRNVTLENIIDYRR
KNAKFRYELKNSKKEATKSFTSTIQPSTPSSKIWANIRRFCGLNPVKGIHAITNPDNNEITTSNAEISNIFAKYFSNLSD
DQNFTEEFLNNKYRNNSVDYSPSPTAQTIEKKIANLELASALQTLKGTAPGLNRISYQMIKNSSPTTKTRITDLFNKIFD
THIPQAYKTSLVTPILKPNSDKTQPTSYRPISLNCCLAKTLDKIIAKRLWWFVTHNNLLNKNQFGFKKGKSTSDSLLYVD
YLISKSNTHTSLVTLDFSRAFDRVGVHSIINQLQEWKTGPKIINYIRNFMRNRKIIVRIGPHTSNSLPLSNGIPQGSPIS
VILFLIAFNKLSDIISLHKEIKFNAYADDYFLIINFNKNKNICFNLDNLLNDIENWGSYSGASLSLSKCQHLHICKKHYC
TCTISCNNMLIPTVDSLKILGIHLDNKYKWNTHINKLIPALHKKLNIIKCLSSLKFNCNTHTLINVVKATVIAKIEYGLF
LYGHAPKSILNKIKSPFNSAIRLALGAFRSTPTNNLLQEANIPPVEIKRDFQTAKLSKNLIYSKDTPIHKFVKQRKRRKK
RPPIIDHIINFCQELNLPYEPQKLWKHKPPWDLPNLIDTSIRLHKKSNTSREIYQKLYEDSKANLNSYKHIFTDGSKITD
TITYAITTETSILKCGILPPYSSVLTAEIIAILEAIEFIKNKKGKYVIFSDSLAAIDSIKNTNNNNIYPNKIRSILTQLA
PKIKLMWIPGHAGIAGNELADQAAKSTNKFPLIFTPNINPTDIKRHIKAEFTTRQKQNIIHCNQWYQSTNMRNHISDFFR
NTHQKWTRLDQTKITRLRLGHTNLTHQHYLNQNPKPPCPNCQADLSLPHILNSCPPLLQVKQAIFKNSNPLDLLRDPNPD
NIEKILQFLKTTQLYHKI
>CR1-22_BF_pol#LINE/CR1-Zenon 1503-4523  [Branchiostoma floridae]
MFDNPLTTIWLFLLVALSLRIGTDIVTTGSTYLNPPMDPTQQNIRHPDTASDMTELLLNPNSKNLLTMVHLNARSLLPKI
EELRSLVSTMKFSVLCVTETWLSSEIVDRDIELEGYQVYRKDRNRHGGGVMMYVSDSLYTTRRGDLENDEIESIWCDVTK
ANTNLLINCSYRPPSADDTFFDLFETQIQKATDQAHAVKVILGDFNAKNSNWLNSNTTDNPGRQLDNIFMNHGLEQVLHE
PTRGRNLLDLIVTSHPVMCHQTGTLAPLGDSDHLATATALNLKANHHSGKRLVWLYSKANIETLHQHIAAAPWDINHVFD
SMDDIWDSWYNMFIAICKQHIPHKFVSTTRTAKPWIHSNKEIKTAIRRKHRLHSRAKRINTEVTWATYRRQRNLVTALTR
RAESAYIEELVNDVETGNTRRFFTYAKSALGNTSTGIPALKVGSAILETPEEKANALNNFFINQTDLPARNDPAPTFHPT
TVPGTVLDSVQLSVEEVRQQLSSLKVGKSCGPDEISPRLLRLVADPISAPLTCLYNKSLQLGQVPSEWKKANVTPIHKAG
SRHLSNNYRPISLLSAVSKVMETLVNKRLIAHINPILTDHQSGFRPLDNTALQLCRLMEEWTDAMDRGQIVGCVFLDLRK
AFDKVWHAGLLAKLKAYGINGPMLNWFTSYLSDRRQRVVIQGVGSEWKSPLAGVPQGSVLGPTLFILYINDLATSLTQCQ
TNLFADDTSLSSCHRSIDSVVASLNSELSSVSTWLSKWKLEANIDKCKVMFITSRALPRSIPPVILGGTVLQVVTSHKHL
GVTVTNTLSWSTHVEIISTKARRSSGLLCALRKKIPKNLLLRLYTMITRPSLEYADIVWAGLTKRDQKILESVQYQTTRI
ISGHFGLPYPSYERLYSELSLPSLQYRRKFHTAVTMYKLLNGRCPPHLQSLLPHARASAIDSRYPLRNSEHLTTPAYKTT
RSQRTFVSRAISLWNSLPSSTRTASTISSFKNRLRTSPDNKYSVNA
>LINE2A_CE_pol#LINE/CR1 884-3955 [Caenorhabditis elegans]
EFCHRTYSTKLANSSSSSSPTTSMIEISITRQCPLVAKITPVHSTAKSSNAKSTVSTAAMLYTKKSTTLSNSTQKAATKR
QATAPTPANHQSTSSVDSLSKLNCASANIRSIASAERLKYIQDYIREENIDILFLTETFLSPDTPSSLCSTMDLMCIRSD
RLQSHPKSRGGGVAIFHKPSLIMSQIDSLQNGYYDRHFCDILAVDHKPSKARFILVYRPPDTSIQQTAALYSNLSELISS
PANYHFILGDFNLPNLIWDKLDQLPINIHQDLSDLMSSHNLAQIIKKPTRTAMSGKQNFLDLLFTDSPSLISNVSIDSPI
MLSDHSTIRFNLVLNYARTARRLNRRTTILQFRKCNFEALNNHLLIFNWARQFSYFSRCETKLIHFLKIFNELIREFTPA
AKLTNTISPNFKKNLRKRVKQRRLRSPPSDQKKYIKARLRSIKKMLAKEENRIVESKNPRQLLSMVKKRTSTPSHVTCLV
VKGQLSTNSVAIADEFLNSFAKSFTPPSDPFPALPAQKPIAIDPDFTPINICRIIQKLRPKIGFSQDNINFFVIKKCVHS
LSVPLSLIFSESYASGQFPEIWKSSIIVPVHKKGCRTDANNYRPISLTHPLSRVFEKFIVEKLRKECSSKISKSQFGFMN
SRSCTLALLNACSKILDSLTIRSKYVDAIYLDFKKAFDSVPHNLLLCKLELFGLDVKMCNWFRSFLSNRTSSIKVCDHVS
KNKLEVLSGVPQGSVCGPFLFLIYINDLLGMLPPDVQISAFADDIKIYGDNSNSIQKSIDIVTDWCRKWSLNLAENKSVV
VHYGKNNPKFVYTANGIIIAKKKSVKDLGIFVDDKLNFHGHITYVTNAALLKCRQLLKAFRSTNASLYFKLYNIYVQPIL
DYGCEIYSPTSGALIKQLEKPLRFFTRLVFQRCNIKYSSYEDRLAQANLKSVQHRRVLQILRTYHNIITGNFHYPNVSSS
VKKAVTPRYPYMLRSVGETNKGFLRVNLATWNRLAKQIPEKLNRSMFASRLNSFPLNILIPPT
>HER_LINE_pol#LINE/CR1 1-1131 fragment [Scyliorhinus torazame]
EFFEEVTKHVDEGKAVDVVYMDFSKAFDKVPHGRLMQKVRRHGIVGNLASWITNWLTDRSQRVVVDGKYSAWIPVTSGVP
QGSVLGPLLFVIFINDLDEGVEGWVSKFADDTKIGGVVDSKEGCCRLQRDIDRMQSWAEKWQMEFNPEKCEVVHFGRTNM
NAEYRVNGRVLGNVEEQRDLGVYVHTSLKVATQVDRAVKKAYGVLAFINRGIEFKSREVMMQLYKTLVRPHLEYCVQFWS
PHFRKDVEALEKVQRRFTRMLPGMESRSYEERLRVLGLFSLERRRMRGDLIEVYKMIRGIDRVDSQRLFPRVEQTITRGH
KFKVKGGRYRRDIRGRFFTQRVVGAWNALPVEVVESETLGTFKQLLDRYMDYGKMI
>LINE2C_CE_pol#LINE/CR1 168-3185 [Caenorhabditis elegans]
GFLCSSTYCSLNSHPFSRSTTQTNSPILNCSYSSSSSPLSTSLPVCSTDKIVLHTLKFSLANVRGVSVLPKIIMLKEFFS
SSDIDILLLTETFLNSSVPTSLFSTANISFIRLDRNTELHSKVSGGGIVIMHKSSINVSLRDINLEKHYPKHRCEILAVD
ILSSDPSHPPLTIVLIYRPPCCSAAENIALCTHLEAYIPLSNIILTGDLNFALIEWSNNTTSTHPFSLFLSSNNLSQKVR
FPTRISRTSSNILDLVTCSPDVSVLDLSPRPAVLNSDHLSVEFKIPLHPSYHKPIIGVSSQPATPTKIFDYKKCNFPLLN
SDLSRVNWDWEFSAFKTVSEKYEHLLTILENLLTLHCPTKSPNLGTSSAPASNLLRKLKRPRKKTNKLLLSRNSPFETIK
NAQVKYRKLYRQYRKSVRCFENDIINNSNFSKVRRLINSRLKIQEKVPAILVDNKPIVNDSDISEVFAKIFASQFSPEGN
LSPNSPPPPPHNQPNSPPAPNKSPNNCTQADSFLPYIIESVLSKLPPKCGFSPHAANYLVIKKCATPLALPLSIIFRQSF
SDSAIPNRWKHAVIIPIPKKGNPSSPSNYRPISLTDPFARIMERIICSRIRSEYSHLLSPHQHGFLNFRSCPSSLVRSIS
LYHSILKNEKSLDILFFDFAKAFDKVSHPILLKKLALFGLDKLTCSWFKEFLHLRTFSVKINKFVSSNAYPISSGVPQGS
VSGPLLFILFINDLLIDLEPNIHVSCFADDIKIFHHNPSTLQNSIDTIVKWSKKNKLPLAPAKSSVLSLGSRNSNHTYRV
DNVPILPSSTVRDLGLITDFKLNFEPHIIKISCLAMLRAKQILKAFSSNSHKFYSHLFKTYVAPIINYCSEIYSPSPNSS
LSAILEKPLRTFTKRVLQRCNVKFTSYENRLCIMELFSTRHTRIKAQMKLLYRLLTGSTHFSKLTQFVKFSNSNRRPMIL
VRKDTCTSHFFAKSIPIWNNLVKNIPVFLSPYQFSNFLDLNIPRY
>CR1-5_BF_pol#LINE/CR1-Zenon 277-3516  [Branchiostoma floridae]
MGKFPLDKQRHLSICHSNVRSLSANDFIKLHELETIALEDDFDVIALSETWCDSTIPDSDISLASYQSPMRRDRNRHGGG
VALYVRNSIPSKRRSDLECDLFETIWCEIEANNWQVFICVCYRPPGQSAQERTAFIEHLQNSADVIMTDPGGKTAVVIVG
DFNNTSDNSSVDIDRFVADNNFVQLIREPTRITERTSTLIDLIITDSPSLFTECGTHAPLSNCDHSLIYGKMSLRIPPVK
TFKRTVYDFGKADYEGLNSKILTIDWNAMFSANLPDINATTESFMATLSSAIRMFVPSKVITVRPRDQPWMTCEIRHMLR
KKKRLYLKYKRTNSPDLFQTFKHIRNACTSLIRKAKLNHRLSLCLDLANPATNPKKWWSVSKEMFLGKLDRAIPSLIDNG
RVVSDDKAKAEAFNQYFASQTHLNTAGATLPQFTPRTESTKNCINCSPLDVYTILCNLDVGKATGPDGIGNRLLKHIAPS
LAAPLSNLFNRSVQGGCFPGIWKRSNVIPVHKNGDKQTKTNYRPISLLCCISKVFERIVYIPLSSYLYENKLLTDRNSGF
SPGDSTVNSLLYLTHNMHQALDQGLDVRTVFLDISKAFDKVWHLGLIFKLKQLGITGPLLAWIESYLNDREQRVVLNGAC
SEWLPIGAGVPQGSILGPLLFLVFINDLVDNLETDGRLFADDTSLTEIVRDPITSAVRLNHDLRLVHNWSRQWLVTFNPL
KTQLITFTTKRTKVVHPPLYFMGIRLTEVSSHKHLGLHLTPKLSWSLHVSIITTNAMKRTNLLKRISRFAPRQTLEILYK
TMIRPLLEYADVVWDELSVKDCNLIESVQLTAARICTGAMRGTSNDSILSEVGWETTASRRQKHKLIHFYKMVNGLTPEY
LCEIIPPQICDRTTYSLRANQNYIQIPSRTEKYRRSFLPSSVLSWNKLPLTTRVSPSVASFKNELESFFYRPPTHLHFSH
GPRYPAIHLTRLRLNFGQLNFHLFQHKCVNSPMCKCGHPNESTIHYFLHCPLYNDARLDMLSSLTTMFMQGILPFDPRHT
TENILCSTLLRGNPVLSTIQNCHLFDVVFKFIKQTDRFS
>WORF_DMi_gag#LINE/CR1 188-1252 [Drosophila miranda]
MAIVCSAKKCEFGGVIIGDSFLSCWLCDNFAHIKCAGGGNFGRLNDLISKRMGLSWSCLACREIEAEMRTFMRQTRTGFL
DVRKQFVALNEKFLALESQFLGLKLLSESPRRKIPHNDTNLLQPNPIGTPASHLHPSEAFPCRHATPLSVNPPTVAPEFF
TPSNVLPSSTQLPNSINPIPAVSVAVTSDAVSAPSAGVLVADDVLPIPAPIPAPIPAAIPTPIPATAIAANSSALVPRSL
LGVAPPSRSRSGLQLKAVVPRKAIFVSRLIPEATTEDVKQHLATKLNTSPVDIVVTKFSFKHKRNISSFKILLPDSLLSC
SLEPSIWPEHTIVHEFLLKDSNSNPRITEHAPKN
>UHU_tp#DNA/TcMar-Tc1 255-1378 wised with Quetzal ariner-1_DGr_tp in Drosophila grimshawi very similar [Drosophila fruit fly genus]
MGKRTTIEQRKLILEHFKIGYSYRQIAKMVNLSTTTVFNIIRRFVDENRIEDKGRKAPNKIFTEQEERRIIRKIRENPKL
SAPKLTQQVQDEMGKKCSVQTVRRVLHNHDFNARVPRKKPFISTKNKGTRMTFAKTHLDKDLEFWNTIIFEDESKFIIFG
SDGRNYVRRQSNTELNPKNLKATVKHGGGSVMVWACISAASVGNLVCIETTTDRNVDLSILKENLLQSAEKLGIRRTFRF
YQDNDQDNNQAXTKHKSGLVPSWLIWNCPHMIIXPAQSPDVNVIXNLWDLLENNIRNHRSNLXNALLDEWSKISPETTRK
LVSSMNNRLMEDIKAKGYHTKY
>IS4EU-1_BF_ex#DNA/PIF-ISL2EU 5231-2230 (5 introns) [Branchiostoma floridae]
MSSSNSYISSLEPNDRTRYFEKLMVSVEDAGDSSNPEVTGSAVTGDGVRLPDPYSLTGWKDDLSLWPDTDYGCIYTYLIE
APGPFNGEAMKAYKSLEAYNLFISGHVRECRTESNRDSSQPMGVFDQKRGLCHGSSLHLYGRVLLVDVFRFLGNLELSTV
PESEYTNTYHHVDVDNAKRNVYIVEIFKYHRDFHNEKIRQIFHCTVKLANLSVPFTINSKIAPDYSTYNVYLFFVIFQCR
LGEVCSHVAALLFAVEASRSLQEKRTSCTSRKAVWNKYYKDKVPAIQWGMKQEEKARQQYLEATLCICKDVKLEEVGLIL
YKDFPFIGASPDGMRQCSCHGRTVIEIKCPYKYRDIYPAADLCLSDANYCLDKDCKLKTGHRYYTQVQTHMLVTGVSTCD
FVVWTNAGMVVVNVPRDQSLLNVMLSTCVQFVKSSLIPEILTHKLQCGDSGVDVTFQEDDDPNKRYCSCQKPAYGRMVKC
DNNECESEWFHYKCVGIKRKPRGHWFCPSCQC
>MtPH-M-2-Ia_p2#DNA/PIF-Harbinger 1445-1879 MtPH-M-2-IIa_p2 near-identical [Medicago truncatula]
MVNTKKNVVRFSSPNDGGQKTKANWDYKSTENFVKACLEQVSKRERVGTSFTKKGWNNIKAQFHNLTGLKYEKAQLKNRY
DSLRKDWRAWYNLFGRETGLGWDPVNNTVVAPDEWWETKQLVCNRENCYFVSLRYIYPCFLYDEL
>47226729_TN#DNA/PiggyBac gi|47226729|emb|CAG07888.1| unnamed protein product [Tetraodon nigroviridis]
MRAYMGLNILMGINQLPDTGMYWASDIFIGNAGFKKTMTARRFEKLTQYLQLCDREFEPGRGERGYDGLFKVRPLLDVVE
NTMWDAYAPNRCLTVDRCSIVTKGRLSPAQRMPSKALRKGLTVWMLCDSRSGYCHRAKIYVGRPVDDEVAASVGYRAVTS
LVRGLEGQFHHVFMDGFFTSVPLLQRLLRNGIYACGPTHPGRKGYPEVLRPRNVGKLSQGEFYQCQRGNLVATVTRDVKV
VSCLSTNSAPGIVGISPDRRQREAHGEEESDSLESSGAAYGVPRPLPLLLYQENMRGVDLCDQLRECYQVGRPCKKWWRY
FLWFYVNLCIVNAYVIQRESRGGSPPAGFNGKQFTQRHFRVRLAQQLIGDYQGARGMERAARKRHADSPIEYGHRLERMS
ERSRRCRNCTNKGLRHESVFGCKICNVHLCRGGCFSEFHK
>piggyBac-1_AMi_tp#DNA/PiggyBac 993..2870[Crocodylidae]
MRRQRIFSAEACLAQVTGDDSDTSTDEILSQGSEDADFVPDMGDCSEQEDHASTEASSSSDEEELVPQAEVMPTLPVGKG
RGPARGRRGRPRRATAGRGAEPLPPPPENIADDDTFRGRNGRVWGKSPQLIHHRRTAKDIVHESAGPTRESNKDTVVETF
HLFLSQDILTVIIRETNREAERRFREWNDSHPENRKEWKKLDETELKAYIGLLLLSGLYHGGHEALEELWEQRTGRPCFR
ATMSLKRFRQITNYLRFDNKLTREERRAVDKLAAFRDIWTQFVEQLRKWYIPGIHLTVDEQLIAFRGRCPFRQYMPSKPA
KYGLKIWWCCDAATSFPLSGDIYLGKQPEAPRQGNLGTQVIEKLVHPWYKTGRNIVGDNFFTSTDLAERLLQQDLTYVGT
IRKNKADIPNEMQANRRRETFSSIFAFDGELTLVSYVPKKSKVVLLLSSMHHDLSVGGEQRKPDIIHDYNKNKGGVDNLD
HLVRMTTCRRKINRWPMTLFFNMLDVAAIASLIIWLGHNANWKQRSHLRRRRFFLQELGEQLIDGQIKRRMMDTRNLSKS
VKSGMTALNYKLPQRTPVEPSASMSGRCAFCPRTDDRKTRKRCEDCKRFACVHHSTSLLLCEECNI
>47230770_TN#DNA/PiggyBac gi|47230770|emb|CAF99963.1| unnamed protein product [Tetraodon nigroviridis]
MFLPESDDELENFLSGSEDPSSSDDEADADLEDTSYEDSSEEEWNSSATKRGSLLCSSAPVSPLSMSLRSPSKRRGEPCL
CCPSPPRKRMKDASVPQKASSSPRAARVSSSREEQAEKELPGNQPDTERWRDMEEDDSEPPQPRFRPERVPGPQLNRTAN
YTPLELFQLFFSTTVIDTLVKHTNANGRKKKQEHQKQWRTITRQDMYSFLALVLYMGMVPLKAMTDFWKGSRLYSLPFPS
SVMPTNRFLAISRSLHMNDLAVEAANDLKKGTPGYDKLCRIKPLYEQILAACYTFFHPYQHISMGEQMVATNARIGLKRC
IRNKHAKWGIRLFVLADSSCGYTLNFFVDAGKDPEPTGKGRSHDIVMRLLNVPFLGKGYKLYVDNFYTTPSLFRDLLSRK
IWACGTLRPNVAGYPQKKENDMTDKTPRGTIRWMRQGELLFVKWLDTRQVTMCSTIHKAYSNDRTKRKVKNAKGEWTMKS
VPIPGCIKDYSQHMGGVDLSDALISYYNVLHQTQKWYKTLFYHCVDIAAVNAFILHKEMCKLQDQPELQQKAFREQLILS
LAGIGSRPGRSAPQNPPGLIVTEPPPPPSSAQVSDTTPSAAPASGHLPAYFVEDMSNVTPRFRATLGRRTCVFCKKKSPV
YCTTCKKTLCFTSLRNCYREWHKRNSICT
>MtPH-A6-2-Ia_tp#DNA/PIF-Harbinger 947-2268 via genewise with Harbinger_tp, 2 introns (1454:1523, 1750:1822) [Medicago truncatula]
MINEDMRTKHLKLLQMMIVQVSIIIVLIFRLKNKSRSQIPSRIIEHREKVRNELMKHIIGSDRCYDIIRMSPKAFVNLCT
LLRDHGGLTHTRRASIEEQVAKFLHTVGHNVRNRVLSFFFRRSGETISRHFHRVLDALIELEDKFLKQPDGTQVPPKIRN
NNRFYPYFKDCIGAIDCTHIRVKVPTELAPRYRGRKDYPTQNVLAACTFGLKFTYVLVGWEGTASDSRIVKSALTRRYPL
KVPQGKYYLADAGFPLKACLITPYRGERYHLQEYSRNPPRNPRKLFNNRHSSLRMSIECAFGVLKKIFPILQTSTEPTFE
IKTQNKIIVDCCILHNYLMTEDPNQNLIDEVRHELTNESGLQEGHQAQRENNDDTARGELVRADVTGSMWIAY
>Harbinger-2B_DRh_tp#DNA/PIF-Harbinger 861-2273 via genewise with Harbinger-1_BF_tp, 3 introns (1014:1081, 1246:1311, 1583:1637) [Drosophila rhopaloa]
MSSSKNTSLILVEEEDKRQRPKYWVSPYLQERALKGRYASDFQNLLQTPSMFFENFHMPQKSFNTLFGMVEQYLIPKRNT
RPDAIPIKAKLAIVLEFLASGDLQRHIGSTYRISKQHFGVILLQVSIAIWTALRDEFPKWTTGNMLMWVKGFEDEWNFPN
CIGAVDGKHVAIKGPPNSGSLFYNYKGFHSIVLMAICNAHYRFTYIDVGAFGSEGDMNAFSHSxLGKQLLLDQLPFPEDN
VINGHRTPYYIVGDDAFPLHKRIMKPYSGKDLHREERIFNYRLSRARRCIENAFGILSARWMAVQRTLLSNPCKAQKIIV
ACCALHNFLMRESPATYSMQEIPSTVLTDLRPCRRGRPQDFSKEVRNNLKEYLNGSAGCSQVPWQDESAGVTKKLKKQ
>Harbinger-2_Crp_p2#DNA/PIF-Harbinger 2655-3251 R [Crocodylidae]
MRMSSSSSSPLSPGPTCVRTPMPTAQAPNWSQEEVGDLVVLWGHADVQRQFTRGGHSNTHIYEALSGGMRERGHSRSAWQ
CRIKVKALQAQWMAVTDYNHRSGHARKTMAFMRELTHILAPWDPGCTPAGVTSRGGLAEPSPRPDPSGDTSPEEGPSGLQ
RPTPPSSPAAASTGSSGSPGQWLPHPSAAPDPATRSGRP
>Harbinger-3_Crp_tp#DNA/PIF-Harbinger 349-1974 via tfasty with Harbinger-1_Crp_tp, 6 frameshifts and 4 stopcodons.  [Crocodylidae]
LLGLQPHCFWARPANRDWWRRVIQHTWDEDQSLDSFRMTWLIFREIVQLLHTQPGAPATTMRLPLPTETWPLSRWHVGQL
FGVGKATTGEAVLEVCGAPQDELANTMLQVADPLEVVTGYxALGFHKCIRALDGTHIPVTCPPHYSRRGFHSIVLKAHAG
AATNICAGWAGSAHNARIFWNSALPNLVESSCFAPGVLGLQLGNTDIGPHLPTRVCRGQHPPGHCxRPHNICGAWAEEAW
RAEDAWQRECQLWRAPKQASPPSQGPGQAAHLAAADRAPCPRSTDGPPPLPPRQxGGRPRTPGPPVQPQDHTHCGQFAQT
PIFISLHNTATDPHPSPSPTTDSLPPSLPNTDPTPNPNAAPPIKDPLPLxTMYRCLCETVRGGQVVEALRWGARHPDYGA
WCRSPEGHPAPRPLVAPPWVRIPWRARQAGGWPRGEGGRCPALSCSPSSSTGPGPAGPTCGAGPAVASSCSGAAWRRGER
WAAAQAGGQAARGPGSGGRGRGPWLLQAVLHLLPSPLGGWHWAAGLQGPGGARAGGWAVARS
>MTIS112A_tp#DNA/PIF-Harbinger 2229-3506  [Medicago truncatula]
MDPFDLEAYFQKRDAEDTYMVNRFIQRRKQIEEGSGSRSRKYFNRDHAAANQRLIDDYFADAPTYDDAMFRRRYRMQKHV
FLRIVGDLSSSDNYFTQRIDAANKEGISPLAKCTTTMRMLAYGVAADAVDEYIKIGSSTALECLLRFCKGIIRLYEEVYL
RAPTQDDLQRILHVSEMRGFPGMIGSIDCMHWEWKNCPKAWEGQFTRGDKGTTTVILEAVASHDLWIWHAFFGCPGTLND
INVLDRSPVFDDVEQGKAPRVNYFVNQRPYNMTYYLADGIYPSYPTFVKSIRLPQSEPDKLFAKHQEGCRKDIERAFGVL
QARFKIIREPARLWDIGDLGIIMRSCIILHNMIVEDERDTYAQRWTDFEQPGGSGSSTSQPYSTEVLPAFANHVRGRSEL
RDPDVHHELQADLVKHIWTKFGMYRD
>Harbinger-5_BF_tp#DNA/PIF-Harbinger  590-1867 via tfasty with Harb_Cis1_454-1581, 1 stopcodon [Branchiostoma floridae]
MDPLDHVALLQIAILQQDLLEKNDEKTRRRKRGRPRRYWTRPWLSEERRRLYGHHSKLMEELRVEDPSSFFNYLRMEPVM
FDELVQRVGPRIKKQDTKMRxALPPSLTLAITVRFLATGDNNPSLMYNFRVAHNTISLFIPEVCQAIVEEYKDEVITCPT
TPEEWTPIEEVFRERWNVPHAVGAVDGKHVAIRKPGKSGSLYHNYKGFFSLVLMALVDGDYKFLWMDISSSGSMSDAQIF
NDSELKDCLEDGSIGFPEPFPLPQDSEPMPYFLLGDDAFGIRTFLMKPYSHRHLQRDERIFNYRISRGRRVVENAFGILV
QRWRVLLTTIQPRPSVVQDIVESCVCLHNLMRIRYPSLHSGMMDEEDDQHNVVPGAWRQLAQLEDVEHVTGRNRDTKAGK
RQRALLKHYFNNPVGAVPWQNRMIDG
>PiggyBac-1_HM#DNA/PiggyBac 796-2643  [Hydra magnipapillata]
MNPKNFYGSTKRLRIPFRKTVFPVNQPXLSEVSDLSGESDEDFITSESESEYGTSEWDSETSDGNEQQQAPQLSSSKTHQ
HLLQQPQPTYQPQEKKRNLIWKIKKDDDVQQINLPFQNSEDKEDDNNGISDEPISYVRRFLTDELLQKIVDESNKYASQI
NIENMLRLEKDELEQFIGILYLMSIVKLPSTRMYWSNELYFEKVAAVMTLNRFEKIKLFLHCNDDRQRPENCTDKLYKIR
PIINMLKESFISLKHDEILCIDEQVVPFKGRSSLKQYNPHKPKKWGFKFYILASVDGLVNNFEIHSGSIDVCVGQPDLKA
SGNIVMHLLVNVPRHKWHKLFFDNWYTGFDLVKTLYHQGIACTGTVRTNRLPNIKMPTDGELKKEGRGSTAIRVTTVDNV
ELRAIKWFDNRGVALLTSYEAVNPINIVNRWDRKTKRIVQVKRPSVVTTYNTYMGGVDLLDGMLSLYRIHIRSKKWYHKL
IWHFFDLIVVQAWILYCRDMKKSQALKKDIFQLRIFKLKVAKCLVQSDKALSSRRGRPSTSVDHLHRLKRKRGPAANLPE
PSTRKDNIGHFPFFVDKKGRCKYPGCTGITKVFCEKCKVHLCFTSNSNCFRKFHE
>Sola1-2_AA#DNA/Sola 374-2498 Via genewise with Sola1-10_AP, 2 introns (1018:1078, 1590:1658) [Aedes aegypti] 
MSALKLLQVYGSESEGESSDEEFIGFGDSDDQFPANNSKHTAMWNALSAINLRHPENHPSDSAEMESGTERDDLSGSDEE
DRGSDGSFFQLEKRKRKQTKRQKLKEKRTKRRRLSHKLRIVKCGCKKKCDQIFSKDERVNIHSRFWKLEPNEQCNFIREN
VHRSSVQTRRTNRTVANHPKKNFSYTFNLSLINGEKLKVCRKFFLAVIGYGENCGNIIYRCLEHDFDGNPNPTKRGKYER
SKAKREAVKTHILSYNPSVSHYRREHAPHRFYLPSDLTEASMHQAYQDSASPALRVSYQFYCSMISKMNISLVKLGHEQC
EVCVTATLHQNSSGHKEEDRFVTVCSTCKSHVEHSRLKNLSRADYQNDGDQIRAKEIVFSVDLQKVIQLPRLEGLKSIVF
TQRVLAFNETFAPVGEYAKTYPVVACVWNESTSGRSAGDIASCFGKVVLWCQEFEKITFWLDNCSSQNKNWNLFLYLTLL
LNSEKVKSNEIILKYFESGHTFMAADSFHAAVEKGMRHGSPASTFPEFKDVVQKAKKNVVAMDMAATDFFELRMTVSQYL
LNQCKPRPYIENIRKIKLKKGSYEMSYSGSLDDDVESTSCCIFSKKQMKTVTDDSFELESILSRRKVPVGICPTRKQALL
RVILPVIEEHQKKFWIDIPERQET
>Sola1-1_DPu_tp#DNA/Sola 90-2294 [Daphnia pulex]
MFQNVNDELEITESELEKNKSVFTDITKINLCLTNDGLRLRRQIEERDTQQLSAVNPNKIEPEFLCVSGPVIENGISTTS
GDDLNQPRFLRSMAKVMDEINLILLENERLFNELSQLQSQLTDSNSKLQMFQNVNDELAITESELEKKRSVITGIRKINL
CLTNDDSWLRRHSKDRDSWANQPQHLPEDSYVMPQNQQGLSNLLEKRDYQAREKPEDPYVLPPIPEKLVFFEKKDNQPQH
LPENPHALTPNPKKSDLSEKKDEEVGMRYLSDEKNSNELYPWVLLEVLRSNQRYQIKPCIQLPFLQSFNPENPDLVEGLQ
TDSQFHLKPGDLHVMHSCRNAEKIDWFEKNESQHIPEDPHALPQNQEKSNLSEKKYNLPRHKTGETNALPLNSPKIDLKG
KKDNQPRHQPEVPSFVLLPINQENSDLFEKKDYQPQHIPENQHGWPPNPQKSDLLEKKFEHPRHKQEDSHALPENQENSD
LLEKKDNLRQHKTEVTNALPLNPEKCDLMEKKDNQLQLEPEVPSNVLPPNPAEKSHSFEKIDNEVIKDRKFCRKEHQEES
QRQQTEPEKPKEKQEKNVHETLKHIRQNIKKSLLSVKGLLQQPKQVASENNPIIDKCIIYGKTFPLCKGENEFKIAVVNY
NFWESIGKPPIVKANWTLTSKTGKNLPLLGEITVKIVVNDKKRMIPIAVINNPLETNALKNIYIGNSDLPIRGMKPLKRM
ELLFRKLRKQEPKKG
>Sola1-2_AP#DNA/Sola 1581-3674 [Acyrthosiphon pisum]
MDVEIITDVQPLKYIEEKIVNNTIMIEISNETNTSYMNTELFQNNNNITTKDAETDFRPLNLYTERILTNQILIEPNTST
VDANLILENTDFLPLMESVSNVSINNDPEYIDPITETNGGRKRKIQNKRKEKQLQRNIIPRELELKCNHTEMIKKNVCRV
SELSEEDLTDFKHNLCKLTTKIEQDKFLITMMTVSDVKRTDRKKTNRSHRMVVKYFIPQIRGNLIPVCLDAFSSVTSITR
RRLNIISKTFKQNHSSPTEKRGGIRVDLIQDEITDSIKEHIKAFKCRKSHHTRKDTGRSYLPPTYSIKYMWENWYEKRKL
EKKQTASLSKYQKIFTTKFNISFGHPRQDTCSYCMEQKIKIQTEGDIDKKSELMLELTLHKRKAKRFFELLKTETPGEIS
CSFDMMQTQPLPKLSVTDVFYSRQVWLYNLTFVISDSNQKPENCILYSWNETESGRGPNEVCSALIHFLESLEKRLKTSE
SPPTILNLFSDSCSGQNKNQFTMITLLYYINYKATVFTQINHIFPVRGHSYMPPDRVFGRIEQVLRKKETILSPNQYFEI
FKNFCTVNAYGKDFKIYDIKSAVKTVVKTKIDFKSTEQKVYSYVKGKNSSIRVSKTYAGAYEEFEVIKRHSDISKLFNNI
KILPKTNYVKLPKQNDVKKLLKFFTIPEDAQEFYEDIFNNNDDPSDEDIHYYEEDNE
>Sola1-5_AP#DNA/Sola 1276-3170 via tfasty with Sola1-1_BM, 1 intron (1446:1528). [Acyrthosiphon pisum]
MKPKLYKKKRKQKKANPELWKRTIVKKKRLSGEMYTNRNAKTFDKKIPKPVNCIKCRYKFNDNFPEDVRSLRCQEYWNIG
DYGKQKMYLSGLIQNVPVIRKKVITTKPKQVSRIYSITDVKGEKKRVCLNFFCTTFSISHRVVNLCMKNIGDNGLFVGKD
NRTNHKALNKTPISALNLVKEHINSFPKVESHYCRRDSSKLYLSSDLNRALMYRLYTDHFCKERNISPVSFFIYKQIFNS
FDPQLSFFLPKKDQCFHCNAYNNAIDKTDIENDWVQHKQREKVAMQMKSDDKKKSALDNGKSFRTISFDLQAILSLPFSG
ENQLYYRRKLNVYNFTIFDSYKNDGYCYVWDECNGKKGSAEIGTCLLNYLSQLPESVTHVSTFSDTCGGQNRNKNILAAM
LYAVNRIDNIETIDVKFMESGHSYLEADSIHATIERHRKHKKVFTTREWALLFSSARIKPSPYKVTTMHYNEFYNFEKLV
SSMIQNTTLNTEKEKVNWLKIKWMRFQKNEPYIMQYKYDQQETVFKKIDTSMKRGAGRKQEWTSVSLDIKYSKKIPISEA
KKKDLKYLMNCKIIPNDYYQFYNDLPTTKKCQPQMSSDDEDTAD
>Sola1-3_AP#DNA/Sola 1185-3119 [Acyrthosiphon pisum]
TANNTILQYCVKIIIILIENAECSIHSSESDSDTSSLSLSSISNEDDTDADPNFELPANNSIILYEENIVSNIIEKKIPR
KVKNTSEIKKNVRKRKANQENWRKNVVKKLRNSGKSYVSSSKSNKFVEAKKVLPPCGEKCKLKCFTKFTEDNRQKIFEDY
WKLGDIDKQRYFLASSMTIVKPKYRYVRENSHRRENNSFHFEVNQIRIRVCKNFFKVTLCINDRPLRTVIEKQDSFTGKI
IANDYRGKHKNHVKVPDTVKEDIRQHIRSIPRIESHYCRANTSKDFIEGGKSIADLHRDYKSECEEKNILAANYVMYARI
FNEEFNISFFTPKKDQCELCISYENSNTVEKVQLQEKYDTHLKEKELSRLEKEKDKQANCVTAVYDLQAVLPCPLGNASS
FYYVSKLNVFNFTVYNLQTNDVQCYVWHEGQAHRGANDIGSCILNYLKVLQQNAIETEASAKLDVIFYSDNCAGQQKNKF
ILAMYLYAVLNFSHINSITHKYLITGHTQNEGDNAHSVIERNIKKSKKSGPIYVPEQYVSFIRSAKKSGNPYKVQEMCYK
DFFDLKDLTTKLGINSFSNAFKITETKMFKVTKDDPDTIYFKNSYEQTEFNSISIKNKKTRKTSNQLNNNLELKRAYDVK
PGITEAKKSGLLSLIRKNCVPNYYYDFYNNL
>Pokey_Cis_tp#DNA/PiggyBac [Ciona savignyi]
MCTNRPNIVSIVVTICTNRPLHRISFAAQLYIFEVICRITNMTRRYTAQEIIDAIPYLSDAEESDFSDSCSEYLPEQPRR
EDSDSDDSELSSDSEQEDSVSEDNDDAESNSNSGDSLCTGTTNTVLWNNVPPGFQPKLNISQDRPCTIHPDITVTTSILD
IFLKLFPYSLLLQIAYYTNKRLSIFQNAKTKRRKLVPTDAHEIMKLFGCFFVMSYNRLPSINNYWSKHQSMGNALMKSAF
SRDRFKLIMSKLYAAEPDKPSQASKLYYVEDLLLCLKSTFMKYRQNSPFQSIDESMTKFKGRCSFKQYLPMKPVKRGIKL
WMRCDPHSGYTYDVNIYAGKDDQGLSIPLGERVVKTLLSTIPDGDDVTVAFDRFFTSVHLMDSLRYPAVGTVIKSRKNLP
VFQDKLSRGDSEFRCNMNGTLAVRWLDTKEVLLLSNFHTNTVGEVRKKQRDGTIINVSCPDAIRCYRQIMGGVDRADQMA
GLYDLDRKSTKWWKKVIYRMLAFSAVNAWVIYKELHRHYKKPYLDFLVELAEELIQRGESGSTVKRRSAAGRPSKRASMM
QNLGTHLPYEGNTRRRCTNCGKDKKQKRTKLMCSACNLPYCIDCFKPCHS
>PiggyBac-2_NV#DNA/PiggyBac 1218-2690 [Nematostella vectensis]
MTRAVDFFQLFFTAHLVQQISANTNAYAYANIEQKQSYANEMGAWNDTNPEEINRLIALILYCGLVNVSSFHRYWNTKTL
YHGLWARAIMARDRFKALMAMLHVVNPIEEDDHDKLRKVRSFLDHFKERCKALYQPFQNVAIDEKMVKSKHRSGMRQYIK
NKPTKWGLKLWVLADSTNCYTYDFDVYAGRQTANAPSTNGLAYDVVMKLLSPLLNQGYHLYCDNFYTSVTLIKDLFLVKT
PATGTATENRRGFPEEMKNGRKWAGKQERGSMRWHRDGVCLAQQWKDNRPVTILSSIECANDYVIVSRKVKSREQWTNIE
VRQPMAINNYNSYMNGVDRSDQLMTKNNALSKCRRWWKVLFFHMIDIAVVNSYILFQLHRAQNPDNTALYRPKKYSVAEF
REELVRQLVGLEEFGPPPAHKPPTRAPNQFETVHMPMMSDVKRNCKVCYATTGKELKVRTYCEAPQCQAYLHLTSTQNCF
KIWHSKEFHE
>PiggyBac-1_NV#DNA/PiggyBac 265-1968 [Nematostella vectensis]
MAESLAIDASEFRAIFGVNPDENDDVNNSENEFQGFELSSEEESSSSEEESEDESDEDSVKNWSEQLTHFDLEDFTGQQR
LKKTVSEDAKAEDYFSLMFSDELIGLISDETNRYAQFIIGQKADREARLAKWKDVTPDELRMFLGVALVMGINSLPQQAL
YWSQNPLFGNLGIQDVIPKTRFEEIAQFLHFSDPNNEPQRGDADYDRLFKVRPVLSDVLKSIQQAYKPSKDISVDEGMIA
FKGRLGFRQYMPAKPTKYGIKVWMAADANNGYVCNFKVYLGQENRQRVHGLGYDVVMDMAKPFLNSYRHIFCDNFFTTVR
LFDHLLDQKTYACGTVRVNRRELPPCAKEKLKPGEMLQRQRGQLLFTKWHDKRDVSLLSTNVSPLEPGRTVRRKYRSREE
IDIEKPKVTDVYTAHMGGVDRADQLRSFYSSGWQSRKWYKYMFWFLFNLAVTNAFVLEGFKRQLQGKAKRTVIVFKTELA
QSLIAKFNSRKRPRVPAPPTPQNIPASAHVATHVEGRKRACVLCSKKGKTTPKGYKIETYYECAVCKVGLCRKGCHQAFH
EMDHGTA
>PiggyBac-4_HM#DNA/PiggyBac 889-2669 via tfasty with PiggyBac-1_XT (Uribo1), 2 frameshifts.  [Hydra magnipapillata]
MEDCGDSEDDDIEDSDSFFAYTTTSSSLTASESESEDNSTEESDDDQLTERSSSSHCRRFFNAAEKARTTGGLAYRQNQN
KAQQVNLIRNILPDKTTSETNPSRNLNQWKDEQNIVKKIKFTANPGLKINMESKKPLDFFRLFVTEELINTMVVETNRYA
MQEINKQRPLRRSSRFKDWKPINSEDMRQFLGVLLHMGCVKLPSFEHYWSKNSLYRFPLFSRIMPRNKFQLMLRFWHFIN
NEDSGSGRLxKLLDFIDHLNNTMDNIYCPNKNISIDESMMLWKGRLVFRQYVRQYVKNKRHKYGIKFYELCESDGIVLKV
KIYSGEATLDKHLLGQTGAIVLDLMEKFLGKGYHLYTDNFYNSFELTKHMISQKTYICGTLRTDRKSNPKECTKAKLKQG
DVISRSREGVVVAKWKDKRDVLMISNLHSLQMIEVTNRRGEKKMKPNIIKDYNQYMSGVDKADQMVSYYDCLRKTIRWYK
KVALHLFDIFVFNAYCLSSKYGVDKTISLLKFRELVVTDLLGDRLNEIVPRITNNSLHYLSSIPPNEKKKLPTKPCRVCS
KIKRKETRYECAVCENRPPLCVGECFRMYHSKE
>Pokey1_HM#DNA/PiggyBac  (GenBank ref|XP_002155850.1|)  [Hydra magnipapillata]
MVFTYYFFISLIKMSNKKLFTSEEAARYIIEEIPSDFSEDIESSNSENEFISDAPKLLEPVENESESSNDSESSMEDISI
DHEDYNVEQDRKWTKKTKNQIETPFSSYEGPVKDHFADCQNPIDYFFSYFDNEIQQNILYQTNLYITQSMKAVLNVSLQE
FFSFLGINIIMGYHELPSWTDYWSCESDLTVPFASSALPRNRFAQILSNIHVNDNAAEPNDNKDKLYKLRPLINQLNSNF
VKLYNVSQRISIDESMILFKGRSSLKQYNPMKPIKRGFKLWAIADMDGYMYHCEVYQGKNKIQSDDLMPKHFGLGASVMY
QLTKTLHGKHHQVYFDNYFTTVPLMEYLLQHKVYCYGTIRSDRKYLPKNLKSDKMLQRGDFDYRVSAGGLVFYKWKDNKS
VNILSNFHGTEHATVLRTQKDGTRKDFNCPVSVKDYNTFMGGVDMADQLISSYGLSRKSKKWWHRIFFGLIERALCNSFI
AFNKITGAKMKSLLFRRMVAQSLITRGRPIKVGRPLLSSTQQGPSKKRKSLTYSVSSAIRKENLGVYWPKFDSSRGRCEV
CAQEKREARPHIKCSACEVYLCLIDKRNCFAKYHIVIYRRKKTHL
>PiggyBac-5_HM#DNA/PiggyBac 484-2212 via tfasty with PiggyBac-5_SM, 1 frameshift.  [Hydra magnipapillata]
KITVSDVLNYVFDGESDFNDTDESDNEFYNENDTANTAIEEDSDNEPLANIASRLSKNLKETTNNPNKNKPSTYKWKSKN
FEPLDDVTFKEPEMKPTPNVETTPFEYFKLFVSDNMLNSITNESNIYILQSKGSEKNISKKDIEKFIGAYLRMGLVKLPS
QRSYWETFMTYNGVSSIMGRNKFETILRNIHFVNNLEISKEEKADDRVWKLRTWITELRNNFQKVSPEEFHAVDEIMVPF
KGKSLLRQYLPKKPHKWGFKLWGRSGISGFLYDFDIYQGKSKNNSDTSLGVSADVVINMTSSLPDKHNFKVFADNYFTSL
PLIVELRKRNIYYVGTIRDKRMKKCPLLLEKDLKKQGRGAYDFRVEQESNVVAVRWYDNKPVNLVSSYVSIEPLHTVRRY
DRSLKKKIDVKQPNIVHVYNQYMGGIDKLDMMCALYKPRLRTRRWYIYIWFHTIQIAVVNAWFLYRRDLKICRPDTKFMQ
LQCFIAEVAESLIKVTSSRGRPSLDNITQLLKNCARVQGNPSNDVRKDGFDHMPSYNEKRQRCLSCKSGLSYISCKKCNA
WLCFKKERNCFEVFHS
>AutoChomp1_p2#DNA/PIF-Harbinger 5916-6935 R [Crocodylidae]
MXXPVPSSSTTQPRSHNWDYGEMRDLVAIWGEEETQHQLHKGHRNRDVFKRIAQQMQARGHNRDWVQCRAKTKWMKIQYK
RVHDANKKSGARRQXMPFYEELSRFLAXDRAVXTPHTYGTTGGREESPAGTPPEEEAQGGPGTTGQPGAQEQVPGGHGAR
GXLLAXAPEESXPLVLVPXSSQDXGAEVHLQLDLSSLDIFSGMVESXEHGAQEQGESSDATXIXTQDLEPEPVPSTSREP
PPPRSSTPRTAAEHAXPGTPFPTQLPRVFRSHSSDTSSLPPFQTRRAPPSPPTTSAAAAAAARPAXPTASPPPTSAXDSG
TXRGRRAARDGTALPRSTRP
>P_Dan_tp#DNA/P gi|2133629|pir||S22802 transposase (clone IbifM3) (transposable element P) - fruit fly (Drosophila ananassae) equals product of RepBase entry P_DB and is 95% identical to gi|12830679|gb|AAK08181.1| in D. helvetica. [Drosophila ananassae]
MKYCKFCCKVVTAGVSLVHVPKCSVKRKLWEESLGCSLGGNSQICATHFNDSQWKSTENKGQANKRRRLNKDAIPTKEIE
PEPENVKEGYTSSSTQTECCSLSKENKSLRQTIRAMEYDLQRLRSQLEESRQLEESLGKIFTETQIKILKNGGKRSTFTS
DDISAAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVEIKTGCLDVAIDLMENDAMDEADKLCVLAFDEMKVAAAFE
YDSSADVIYEPSNYVQLAIVRGLKKSWKQPIFFDFSTRMDADTLNNIIRKLHTKGYPVVAIVSDLGSGNQRLWSELGVSE
SKTWFSHPTDEHLKIFVFSDTPHLIKLVRNHYVDSGLTLNGKKLTKTTVQQTLNHCTKSDVSILFKISENHLNVRSLDKQ
KVKLATQLFSNTTASSIRRCYSLGYDVENACETSDLFKLLNDWFDVFNSKLSTANCIQSTQPYGKQLEFQRDVLEKMTKI
MSSEILGKSQKLPFQKGIIVNNASLDGLFLYLKDKYNMEYLLTSRLNQDIVENFFGAMRSRGGQFDHPTPLQFKYRLRKY
LIAKNTELLRNTGNVEEDNTDSWLNLDFSSKNSENWENNPEDVEPEDDEQTIANNIPADIEMDELTEDAIEYVAGYVIKR
LRTSDCVEQSSTFTYVDEVSHGGLIKPSDQFKNKLKELEKIFLHYTKENFKITKNLKEKLIIAAQNVELDKFVISFYFKI
RIYFRVKYLNKKICIKNQKQRLLGNSKLLKMKL
>HARB5_ZM_tp#DNA/PIF-Harbinger 534-1914 via tfasty with MTIS112A_tp, 1 frameshift and 3 stopcodons (includes translated intronlet) [Zea mays]
MDSLRSLVLSSSSDDSDDEIDNLLLWQHVEHLVLGDTSTRRRRSSLPRRVIHRDHAAGENLIKHHYFGPNPVYPSHVFRR
RYVSxVMFLLxFGASYSYFLRCFRFxVRMQRPLFLRILRAVQREDDYFTVRCDATGLAGLGPLQKVCAALRILAYGLPSD
AVDEYIQIGQTTARDCLIRFCRAIISSFSERYLRIPNHDDIARILSVNADRGFPGMLGSIDCMHWEWRNCPTAWRGQFCG
RNSRPTMILEAVAGYDLWIWHAFFGMPGTNNDLNVLHRSPVFDPLRNGTMPPVHFTINGTTYNFGYYLADGIYPNWPTFV
KAIRHAFEEKKVHFTTKQESCRKDIERAFGVLQARWAVLRGPAYGWDRNHLAEMMTACIIMHNMIVEDEGDGAANLDFVG
PTGPPEVCNNIPEVRNEWLNNHIRSELPNDPDQDITSQTTYLSLQHNLIEHLWARRGSMG
>HARB-4A_SBi_p2#DNA/PIF-Harbinger 3641-3979  [Sorghum bicolor]
CLTIVYVVVKQRAEWNPALEKSLVDILHEYKDSGYRGDNGWSSEGWNKMVKEFHLRNKYVNYTKSQIQDKEVQLKRDYRM
LKEARQQSGATWNEDRNVVEGTPALWANLEVVC
>HARB-4_Mad_p2#DNA/PIF-Harbinger 4645-5070 [Malus x domestica]
MDNENILNATQEPKGRRRKWEAFEEEVLLGVLEDFVARKQRCDTGAFKQGTLVEIAKAVNVLCPHSNIKANPHIESKLKK
WKKTYSMVVDMINTSGFAWNDVKKCVEVDSDDAWQTYVQVHILFYLCISYILAAIFVTHAKF
>P-37_HMa_tp#DNA/P 750-3949 via genewise with P-10_HM and P-12_HM_tp, 4 introns (969:1083, 1287:1372, 2921:3077, 3213:3312) [Hydra magnipapillata]
MPRKCSVGNCRGNYDSANEHVKVYKFPSDKELCERWLAALPNKIQSPTDNMGVCEKHWPLGCSMHYPKRSKYQIPSDPPS
LFPGCFPSMLRQTGKTFRQTNFEKISIESRNSFCDELDSFNKIDKIKNFEVKQFLTDVKQRFPDYFVVTNALDLTVFNMT
FSRPPETNISVTINTHTQQLHAYIKHTQIHCNDILGFSHKLTRWSQLEAIISRMKSSKPELSEELKHLLQEIECTYGEKS
DEINFLIEQLQLQMMPVRGKRYSTLVVRRALELYLSSRCCYRILCDTLSLPHPRTLKLKLGRIGEVGTQKECEECIKTVF
ETLTISEKRCCLLFDEMYVKPSIRFRGCHLIGYSEDNPAEIAKTILCFMIKPMFGKPAFVCRMAPVYKLSGIFVQNLIVE
ITQTVAKLGGEILCLISDNLPTNRSIYQFFALSLNEPWLGNICNQSIIMLHDPVHLFKSIRNNWLTEKTGTIHLTLNSQL
FKGYWKDLVSLYEKEKNNVIKLTNLSYKAIHPGVIDRQNVTHMCAVVNEKTVAALKICDFKETSEFLERILLIWNYLNIK
QEGMDIRLNDPNRASYKNVNDKRLQEILTFAEAVAKMPGGKGWKRNKSFTSETKISLSNMLYGIVDLIRKLLNEDHQYVL
PGIFQTDRLEGEFGIYRNNWYFVTSKMIFHRNNYFYVFFMYFMYFLCILLNFYVFFVAGALGFFYARQLCGGSYHVSVEE
VKNSLRLQRLKLFSKLDAMGVPISQCSIIQSECCQLDLNEDDISYLDTSVSSIDAISEEENAALYYISGYVQHKFLPSIS
VSGTFVTNASEFTELVSRGRLCHPTEDLFQYVRYAYSLFILLPNAEMRFQCVRYISKLFIYFYTALPFDLQALPINTVVS
TILNCFFKGLTKLNESSDKVSLNIEDRKVKKFCK
>P-1_DBp#DNA/P 1404-4073  [Drosophila bipectinata]
MNRPNVRKNGRKCIIASCQGSYRDSSHSIPIRLFSFPSDDRNLKKWVELCQLDDTFNRRTARICNRHFESKYIGKSRLRS
NAVPTLNLCDNSLLRPNSTVPCEQFEFCDDGAEEPIGTYINPIGRKEFLNRVGSPSNLETPNLESSPQLEDFCSNCQKRE
ENERFYRKKNYEMSLELKKYKEKMQKMRRAFVLMKNSSRRKGMRNSRKSTLNLFNIINKLPHVSDEAKTLCKMLLKKSNS
YNSAEKVIAQNINFYSSRTYEYMRDVLKLKLPAKSTLCRWALFKNMTPGFQPDFLENLQKIVGEMSEKGKEAVILCDEIK
IKKGLQYNTALDEIQGFENDGEKRTRFLGQQVCVFMARGLFENWKYVLSYTVSANGIKHDCLMKKVEANIEVSQTLGLNV
RAIICDQGSNNRAAFKKWGVSINKPSFNVNGKEIFTIFDAPHLIKSLRNLLIKNNLNTPDGDVSWDIIRKLYQIESRNST
RLCPKVTAKHINPNSFEKMKVKYATQIFSHTVSAAIRTVIDSGGFVECRNSAEATANFIEKVNKLFDCLNSHVLYEKNPY
RCALQNNNNVHNYLLEMRNYFAEFKYPQVVHCIDGMMLTISSVLALSESVWSSEIFYLSTAKLNQDPLENLFYLIRARGV
TNNNPSMSEFNTIMSKMLSMKILTSKSLSGNCGPDEDTMLINVIQDCSLNKTCKELKTDEDNTDFEMFSDDETEIEQVLD
IATGDEFDSNALRYFAGYILFKILEKKDCGVCADLLKKKIEAQTCTENFILNKNYDCADKTLKLKAPSDYYFSLIEIHYS
VFKKIFEKKPQMNRIKKTIIQSCISSTEKSSIYSNWFSVSHPCYEHRMKMLDGFVLILLRKNSKWLTEKMYFKGKAASAA
GSKKLKILKE
>P4_AG_tp#DNA/P 2503-5011 wised with P1_AG (one intron) [Anopheles genus]
KIHKYEANLFQFVNYFILTFFYLAFPSVIKSQAREPSNNVVQQCSTNNVVQQIETDEGRIDTSVEHHDDDLPSDNITHAK
CQNCVQNETEIELLNQTLKKTQDKCNNLLEVNTFLSKQLEIVSKELTQSQKEIELLKTNHNKFKDVAISPNEFTTRMKNV
LKDTLTSNQIDLITEERKRVRWTKAELSKFFTLRYLGKRAYQYLRDDLNFPAASISTLQRYGRTLNLKQGILDDVINLLK
NITVDLPECHRECVLSFDEMKVNRILEYDPASDEVLGPHNYLQVVMARGLFKNWKQPVFIGFDQQMTKEILFELIKRLYA
IKINVVAIVSDNCQSNIGCWKDLGAHDYCHPFFSHPITKCNIYVFPDAPHLLKLIRNWLIDTGFEYNNKLIKADKLFELV
AYRNAAELTPVHKLTQNHLVMTPQERQNVRRAAEVLSRTTAIALQRYFPDDCDAQELASFIEKVDMWFSVANSYSPCAKL
HYKKSFNANENQLAALSDMFELMSNITALGKKSMQVFQKSLLMHITSLKMLYEDMRKKHSIVYISTYKLNQDVLENFFSQ
LRQIGGVHDHPSPLHCMYRIRMMILGKSPTTLKNHTELKNDDVENSHEHHEEFLSATVFSVADIPQSVPDISVMEKTNQI
CQAIEECSQESDLISTVSSTCNVQSAQESDGLQYVMGYIANKYNTKYPELDLGVQTFKLTTDHCYSQPPTFVQHLSAGGL
FEPSPTFLLLGNRMEKIFLKMHPDGTFSKTKKIVAKIAKNIQNQISELPVEIIRTFAKQRMIVRMRFLNLKSSTENLMKS
KRKHVNQHGKGAKK
>P-1_DY#DNA/P 1189-3747 Near-identical to ProtoP_tp [Drosophila yakuba]
MAEKKRKNISGNKCSLPHCQKSRRDFPTLKLFSFPEKDPTILMKWAEKCQFTEDFVASTSSLFLCHDHFSPDDIGVRYLR
KGTIPDRNLMTYNNNDEINFNAVRSPAQKRYRSQSPVEICRQCHKNTKTLKVFQKKYISYKKMSDERQIRIKMLRKENSN
LKRKIIRLESKSEKNLLSQIDKINLTGNEKILAKMLLKEKKGTNTRWNDSEKLFAQSIYYRSTSTYTFLRDSLKLNFPSP
SSLQKWNSIKKLQPGDNECLYSALRETIKEMNESDKECILTCDEVAIKKNLTYNVSVDIIDGLEHLIDRSNKMGSHICVF
VIRGILKKWKFILNYFVPETNIKGDCLKKLIYKNINIAENIGFKVRGVVYDQGGNNRKCTSLLEVTNEKPYFTLNSKKYY
MFYDIPHLFKSIRNNFLKANFETPDGRVDFDVIREVYELDQGSVTRMTKLTRSHVNPTRFELMRVCLATQTLSHTVAAAI
KACNQNKQFNRNSPEVAASTAAFVQKVNDYFDCLNSRVLTDKNPMKCALQVNNTVWHKLKEMQEYLRSVKYHGNNIYCLD
GLIQTTEAIFGLVKDIFKDHTDHFFFLTSRVNQDPLENIFACVRAKGGNCRNPSVNEFNVIIAKLISLHIFKFSQNSNCE
SDDDVMLPIEFDSIIYQPCIEKKEIQQQEYSVSFSEIVEGNERYFDQNIDNFLCNDIPIELTSSRYFVGYIAKGSSCDKC
RSVILKETEHLTAPSELFIHEKNYSTESDFGKLKAPSDLFFNICKIHIKVFENIFKNNKKQMCIQKFIVDQCIKCTNESS
DFSLWFHVENECYEHKIDLLKKLIKVLLFKHCKWTVIANRQKSQAKLSILSHK
>P-26_HM#DNA/P 719-3409  [Hydra magnipapillata]
MVINCSVYNCKSRFDKSSLISFHRFPLNDEILCKKWATATKCLQITPSKHSRICSKHFKLEDFECQENGKRVLKKNIVPS
IFDFHESLNKNNKRNQLYNDDTSHIKKTICSISNKEVTELEITNTIKEKILKQNSPKKLLLRKKIKILKQKLKRKDKKIA
SLSKVIQNLEKKKIISIDVAELLENNFSGLTKELLKSELKNRGKKKKGYRYSEEVKKFALTLHFYSPRAYEFVKSTFSLP
AVSSLSNWTSSVDCLPGFFGDVFKFLQNKTFEDSSYKDCALIFDSMHIRAALRYDNVTGSYEGFSSFGNNILAYDPDKLA
TEALIFMVVGLKGHWKCPIGYILCDKISSTDLSCLIKNALHLCATHNLNVWSITCDGLISNFSAMKNLGCSFGSKIKEMC
GSFPHPEYDHPIYYIPDPCHMLKLARNALCSIGIFVDEQNQYIKWDHIKALHKLQEEEGFKFANKLGNYHIDFRRHKMNV
KIAAQTLSGSVADAIEFLMVSGHPTFIDAQGTINFIRTLDKLFDLLNSKNLFEKGSKKPLFLNEAPKWIETIEKSVNYLV
NLSDLSKTSLIKHRRKTFVLGFIVAATSVRDLSLNLLSRHENPFEFILTYKLSQDHVELLFACIRGKNGFNNNPDARQLK
SALKRILLRNSIIGSKFSNCLTFDQKSSGSIFLLKWSKRRSPLVEQNIISSEDSNYFKDLAGCLSSVSTSIYKEAILGYI
AGFIVRKLYSKITCLTCANSLISPKTLSTDHEYSIFCSSSWKSFTTFKNRGGLIFPSCSVLKIVEKCEHVFKVLVCGADP
HNLKISSKKNLKTYLVHFINQKLANDALFTELNMHDLEHEILTEDMHSSQLLKKIIEKYLTLRLHSYGQLYTRNELHKGK
IGLRQQSNKLVLFKGL
>P-2_TV_tp#DNA/P 3541-6060  [Trichomonas vaginalis]
MNSEKIEINLSCVDIATFKKLEKLIKEKLPGVIYNNIADYQTSPNQSKLLQENTIKSMIAASKNRALSYQRSLQMKKINE
QRKIQDGTADELEQEAEKADLETLNDNEDDSDDQDEDETNGDESLSLSEILLDDYTPLFKYPPFADKLTCVIINNMLYNL
NFPNSKSRRYYAETLQFAFMLYCQQPSEYLLARQKLMLPSKATLFRVFGKDIAAWKELLLSKSSSLPVFLRFRELYPYTD
EELREQCHFCIGIDAITGKLWKKSGHDDQIEDLFALYLMPLDCKGPSICLHIIQHTNGLASGIMSEILDYIATVQKTLNV
PVFTTDGDKSYDFVYQIFFHHWYSLVTGFDGLVEVLKSAKFQDLKIIFIADVVHIGKNLRTLLIFPNKLIFLQPYDPTLH
VDITKIRLFSKLGDAINNCDKSTTLNDKYPVTIFNVQTVKDMLDNNCYTEATWLLPLALWFEGVRNTILPVEARLSMFKL
AFFILHFFLRLQDVVGVTDRLPNIETPDHRLKFKGYLFARRMHLLKMATSLLTLYGFLEEFPNINFQHLTTLPVEHLFAL
FRKFAHSKKEVKDLMSAGAHLVMNQTYREQNFDRLVSECRLDNSGANMANVEEMPEDIKSQYIFTDEDIASITTDLMYLV
GWHEDQVFSVWGRLIKYNHTQPLSVFEPYSKDFPRNGVEILRQKLDQIIEIKAPVPFSENRGYCPSQAYETQLQKVPMAK
TPLYENFNDILQFANSNSSSSTENSTTTDSTSQGIQSQNSNFPNENLENSQNAESTDDFQSLITPIQEDHFPSANELKQG
FDIAHDVLISPPPENQHPEIDEEETQKAIYLLQNLDFPKK
>HARB-5_Mad_p2#DNA/PIF-Harbinger 2481-2831 [Malus x domestica]
MAKKGASSSNPTATWNAHNISIFCDVCIKEVEAGHRPGTHFDKDGYANIRANFKAETGHDYERKQLKNKWDALKNEWKLW
KELVGKETGLGWNSSKGTVDASEEWWNNKIQVCVFIF
>Harbinger3_TP_p2#DNA/PIF-Harbinger 3679-2483  [Thalassiosira]
MIYSAAVTRFLANSIAFLSPISVTSTEGGGGGGREGLRRGRRGVGEASTDVTPAKRPSSAPTTTSQRKKARQPAPKSTSQ
RKKAKQPSLPTRTSPRLHPQKDAQKELAEPRVLLSTIAEDPPSPSDSDKSPDILAETQETVTIVPEPQLGGDADDDARDD
DDVPDGVDDASGDALPPLENVNVSADAQVPSQLTQMASPNVQDRETEFSICNSPGEFSALQEASVDDPYHRMLVESAIDY
SFGDRVHYFLGGARINNKFRLSVETCVLGEAGKIVCEDMCAKVASLKVQLAKKYEDIMRSLDPGLFESENIREDMCKRMS
GGRPNKSSSETTTFGEKKMWEKWKQMKMEMKKIFTCLPVTYHKMKSGTQLYEVYDNVIREHWKEQFVSFAVERFKMSPF
>Harbinger2_TP_p2#DNA/PIF-Harbinger 2975-1764 (reverse) [Thalassiosira]
MLTDDNETPPKERTKRTLFLAKTIGIDVDNDLAPFLEKNGKKSITITKKMILQEIKRRDPRIKIKNTKNTTNESLMAVLP
DLTDARDVAYIRTQYAMIRDHLLNGVSACTPTAQRKGTDIMRVFLLINMLPDLRRAYSLSQTGSNREMLDAGKTHMSKFL
QLLVRYFNDPSLEVSTPCQPSLHYSFAEPIACNKGEFELTESKAKKLISDSRRYLTTMINDWEKSGNGSNQRLDDSDDDH
DFVFDLWGRFDPETCDGDDRANFLRHLPHYWLMVWHLCDEGDLLRFTCAQLRDDHTASSLSAPPSVSRGSGSARKLAQQT
LELHKEIAESVKNIGRAVARCSDDTSYERASKIRRLDKLRADRYLVFRDSKCQASSQEERDAAADYVKDLDEMIDSLKAE
LMG
>Harbinger-1_DF_tp#DNA/PIF-Harbinger 125-2065 via genewise with Harb_Cis1_tp, frameshifts, stopcodons, 1 intron (439:1303) [Drosophila ficusphila]
MLVAMDFSSDDELLLEESLFFKLKYSKKVTERIHPINLGRKAFGEFHHLFNELRKDEKKFVEYTRMKISTFDYILLKIEP
LIIKNWTNFNKTPIIPAERLIVTLSSYDNNIVLTCXSCFRYLATGTSFRSISFNFRMGASTVRSIVIETCEALWTVLQPL
HMAVPTEQNLTKVADQYWNLWQFPNCxGxIDGKHIRLKCQXHSGSMFxNYKKFxSIVLQAVADAKCKFVTIEVGGYGRQS
NGGTFASXRFTQRNNSGDLKFPKDSYLPNTIVTMPYRCCMELILSLDWVLRPYARRNLTLENEYFNRRLSRARRCVECAF
GIINSKWRILWKPIETTPPNAEIIVKAICILHNTMLDLE
>Harbinger-1_VV_p2#DNA/PIF-Harbinger 1021-1416 [Vitis vinifera]
MSSNIVQPLQQPSGEESEKQSKAYWDDITMDAFIKVCVTETLAGNRPNSHFSKLGWKNVIKAFNNLTGRNYQYRQLKNKW
SSLKKDWQLWNTLIGKETGLGWDPMRQTINASNEWWDKKLKVCFVYSLNLFD
>Harbinger-1_PTrit_tp#DNA/PIF-Harbinger 192-1527 via genewise with HARB7_ZM_tp, 1 intron (492:567). [Puccinia triticina]
MDPDQHLFHYMWDIEEEESIRRLLALRESQSVPRNLSPEPREIVLRDRIAGNDRLMADYFVENPVWNNQTFERRFRMSHR
LFDCLCGDLQQHDRFWVRKADCCGQIGLSTHQKMTAALQQLAYGTSADILDKYVRIGETTALQTLKYFIKNIIELYATEY
LRPPNRDELKVILSENKARGFPGCIGSIDGMHWAWKNCPSGFAGQYTGKEKKPTMVLEAVASQNLRIWHAFFGTPGALND
INVLHRSHLFDGLLARASDTINYTINGHDYHHGYYLCNSIYPPWSTLVSSIKHPQDGASRHFAKLQESAQKDIEQTFGVL
QARWHVLTGGCRLWQKHNVMEMMLCCIILHNMIVEEQSPLDPFLDKTDTKIIENHxDPALTHTWANYLQNNHDLHNPETH
AQLRKDLKAYNWLLRGDERD
>Harbinger2_DR_p2#DNA/PIF-Harbinger 642-1484 Most 2p are on reverse strand after the transposase. This one is on same strand before the tp. [Danio]
MAETKKQRKVIFQKEEINIILEEVELQKHIIFSRFKGSHTNKEKQKMWDDIATKLTATRGIKRSGNEVRKKWQDFSSLAK
RKRALQRTTINKTGGGPNDAPILTAEEEKALSILGTTASDGICGGIDLHGGEGLRQPEPESGPPCSQEQSGSPPIDRQLP
SPSPPNSPTDQPPSSIVQATATTPRFENICGCSQDLVQLEREKLDVLKDIRQSLKEANEMNYNFQREIIELKKAKMALEE
RRLSLEEMSFARPSISVPIILPDESGKIVQCCLIMNNYMF
>Harb_Cis1_tp#DNA/PIF-Harbinger 283-1581 [Ciona savignyi]
CIGYVAFCKNYFNLSLIYFTPRKWWVRPVFAHRVIRGEVILVDEIRTDPELFFEYFRMSPTTFDELLSHVEPLIYKITTN
WRTPISADKRLALTLRYVARIYYQGRFALXTGYFFRYLATGNSMRSLSFSFRIGYSTCCEIIGETCEAIWSTLRPLYLKT
PTSPQEWRLIASKFESNWNFPLCMGAIDGKHVMIQAPEKQGSEYYNYKGYHSIILLVALCDAEYCFTAVDIGDSGRHSDG
GAFSNSQFGKCFTQKENVLCVPQDDLLPGSSIRVPYCIVGDAAFPLRKNIMRPYPGRYLPDDQQIFNYRLSRARRVVENA
FGILSSRWRIFRRPIIAEPKKVIAITKACCCLHNFLQTRGKICPPTFVDREDAEGNVILGDWRSSGSILQPVGRTGSNTY
PQSASDIRNKFKDYFISNVGEVDWQYRVIKRH
>HARB-7_SBi_p2#DNA/PIF-Harbinger 1076-1405 [Sorghum bicolor]
MGDKADWSDRFLRNLFDACKEEIDAGNRPMGIFTATGWKNVVSKFGDKSGDKRTKKQLKNKLDILKKEYTMFMEFKNFAT
GLGWDAENKTVDCPKEWWDEHLAVSIVLPL
>Harbinger1_CN_tp#DNA/PIF-Harbinger 726-1737 via tfasty with Harbinger1_DR_tp, 1 frameshift. [Cryptococcus neoformans var. neoformans]
TLNRFFEIDCYPSEGTSAIWTTRVIKAILSLERNNVYWPDENERKAIDRHFEEEEDIPDGCVGIIDGFHVPFAYKPARHD
AVDFFSYKGRYGFNILGICDHLKRIRYFQYGYPASAHDARIFKNCSLFEEANADAQSNREAMLQGRAVHSEMISQGEYLL
ADSAFPAGDWCVPLFKRRRGQNDLDRPEVSLFVPYLMYRPTCSYIQQAKFNKKCSSARVKIEHAYGILKNRWQSLRSLRV
KIRNVRDEGVATCWIRACVVLHNLLIDTGDWYNRLDGDADEPDDYIDIERMQERMERVLERHREEEEDEARDARDASNLT
RKRVMERMQEIERRDLL
>Harbinger2-3_TMe_p2#DNA/PIF-Harbinger 2480-2839_R [Tuber melanosporum]
MQSPSTPDPNHTYFLSSFESATTASSTTVEESAADNSRSSNSPATIRPGWRTTKWSAWMDRALVRQVLATDPINCGRGRT
TAKWAEVSTILGSIEPQPICRSGESCRQRVKKLVEIYKVY
>Harbinger2-2_NV_p2#DNA/PIF-Harbinger 3301-3687_R [Nematostella vectensis]
MTNFFFYLQMAMKWNAIHDESMLMEVMVHEPWVHKFGSTERGKVWEGVAEALNVIPQFSSNGCKLKGRSVRERYSLLEKK
NTKKKMAEEMKASGIDTPELTNCERLLEELVERFAEAKLCVMEDFHNKE
>Mariner-1_PGr#DNA/TcMar-Tc1 228-1265 [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MVRTKPDRKPHLSTETKAMIVGMARAGKSLAYLSQEFGTARSTLSGIINRWKDRGTNESKPPTGRPPLTTERDERRLRQV
LDDQRRAPMREIVEQLATPISIRTARRRAHKLGYQNRRAVKKPFVNDKQAARRLAFATAHLNWTVDDWRSVLWTDESSFE
LGKNSKAISVWRQTDEKYRPECLEPTFRSGRSSTMIWGGFFDKTKAPVLFMPPGQRNAASFIENVYEKGLQPFMDGIDEA
HRPTLMEDNAPVHTAILSRNYRASHGIKKIDNWPAQSPDLNPIENVWKDLKVAIQTLYNPRSIPELKEAISQAWDDYPTQ
TFDHLLESMPHRMKAVVDADGGPTRW
>Mariner39_CB_tp#DNA/TcMar-Tc1 152-1144 wised with Mariner13_CB  [Caenorhabditis briggsae]
MARPNVHHATVISLHKXGVSRNEIIKRIAIADMWFFEVIKRFTESGSLFDRIGRGRKTTVTTPENVEAVRDQIRSSLHRS
LRKLAMNMVIYWFLIXKIARKKLNLKCYCIPKAVILSESNKQXRLEKAKFPLDGTQRGEHLGSVFFDEQWFTIEAESNFQ
SYCGLAKDIKEAFEKEKTIPGVFHPARITVFDAICSNFXFIDKNVRIAEKMYIEQILKKNLLPRTKYHFERVHLVHQNDG
APAHTAKLTQQWCEAHLPGXDEWPAYSPDLKPLDYSIXVLQNKICSRPYSTFEALEETLFEKWDKLSXRATINAYRRRLQ
TVTEANDDRIE
>Mariner-1_PPc#DNA/TcMar-Tc1 153-1187  [Pristionchus pacificus]
MVKSNPLRPAILKLFRAGIPRHDIVLRLAIPKRTVYDAIARYLELGSEEDRKGRGRPATVSTPRNRERIRKRIGRNRKQS
MRAMAKNLHISNTSVRRLIKSQLTLRPYKYLKLHGLNDRQIKLRRDRCRLLLMRCARAEHFSTVFSDEKIFTIEGKMNSQ
NDRILAHDPEEAYKSGGFIGQTSHPLYVMVWGGVCATGKTPLVFVTPGVKVNKEFYVKHILQDALLPWARSHFGQSHWTY
QQDSAPSHKAKKTQDWLKAHVPDYIPTSEWPPNSPDLNPLDFSVWGVLQAKVSTTKYKNRDTLKAALLKAWAELDTNYLR
ELATAYERRLKACVKAGGGHIEIR
>Mariner-3_DBi_tp#DNA/TcMar-Tc1 455-1387 1 stopcodon. [Drosophila biarmipes]
MGPRTTIEQRELVLKHFKDGxTQRAIAEMMVCLSPSTVQYIIQRFVRENREEDRGRVAPNKIFNDHEERRIVRKVRETPK
LSAPKIAAEIEEEMGKKCCPDTIRNVLHKHNFNGRVALKKPFISDKNRIVRFKFAKEMETKPISYWNDVIFADESKYNIF
GSDGRHYVWRRPNTELDTKNLKATVKHGGGHVMVWGCMAASGVRNLVFIDGIMDAKMYLYILKENLLQSAESLGILDRSI
FYQDNDPKHTAADVKFWLVWNCPHTIKTPAQSPDLNVIENLWEILDQAIRKRKISNKTELKSALLEEWRKIPVETTKKLV
ESMGNRLKSVKKQKGGPTKY
>Mariner-1_TMe_tp#DNA/TcMar-Tc1 150-1253 [Tuber melanosporum]
MPPILRSHAKKPIPSTHLSEFTRGRILGLHEPQMRYQQISHYLNIPYTTVRDTIAKGHQEGKENKGRGRHPKTTKSQDDA
MVEEALKNRHTTYSDIAEQVAPNVSSRTVRRRLEKKHLRKWMAQERVHLDEDLAQERLEWALAHRHWTKEMWRRKAMWGD
EVAVERGGGKRRKWVFRYPYEKWNKDCVEPKARRGERGISQMMTGCFYSQTHGLFLPVFPDPSSARGGVTGKSIIDVYDH
YDFLGIWENIREKAGEEEVFFIIDNAKTHLPFRRWLRGQGITLMEIPAYSPDLNPIENIWSLVKGKLHKHYPELYLMKGD
VNVVKKAIVEAITHCWELLDPKVFDTLAGSMVDRIEAIIKADGWYTKY
>Mariner36_CB_tp#DNA/TcMar-Tc1 274-1340 wised with TCB1  [Caenorhabditis briggsae]
MPRAGKKRNLTVEEQKAIFRGHQNGASLGDLASQFDVGKPCISRFLKRWKSHGCKPVKYHIGRPRVTSHLDDINIARVSR
SNPRLTAPAIGREVFLISPVSPSTSTVKRRLRAAGIMGRRPVKKPFISEKNRKARVAWAKQHLNWTRQDWNQVLWSDESK
FMLFGSDGIQWMRRPVGSRYDPRYQLPTVKHGGGSCMVWGVFSGKGIGPIHRITTIMDRYVYKDILESKMLPHYKAMGRG
IVFQQDNDPKHTSKFVKVQKILMSQNIFDFXDWFSSRRVRVMDWPSQSPDLNPIENLWDELERRLAGKKAKNVDEKYQQL
EEEWKKIPQTVIDNLLDSMQRRCQAVIDSRGFATKY
>ATHPogo_tp#DNA/TcMar-Pogo 396-1899 via tfasty with Mariner2_MT_tp, 1 frameshift and 1 stopcodon.  Named Emigrant by Turcotte and Bureau [Arabidopsis]
MASHLKGVSKSTMTDHIRKELCEYKRYHMECTQNDLKVxLEEKFHLKISQGTISNTLKHSAEYLSTNLGKGKAIKRHKSA
KFPEMEKVVFEWFLQHQSHVNMTGELILEKAKETMKLVYPLQDSVKQFSQGWLEKFKLRHGIKSFRRFGESGSVDTHDME
KKLEVIREKIDQFPLKDVFNMDETGLFYKLQADHSLATKQLEGRKQDKERLTVVICCNADGSEKVPLWIIGKYAKPRCFK
NVNMSGLNCEYRSNKRAWMTSVIFEEYMRWFDNKMHGRRVLFVVDNGPAHPKIIEGLQNVELFFLPPNMTSKIQPCDAGI
IRAFKMHYRRRFYREILEGYELGQSDPGTINVLDAISFAVSAWTINVRRETILNCFRHCKIHSVDDVINNLGYRNRMDVN
SLLDYPGENDACSEVQTLEEIDASIFNGDDEVEDDIALPLEPITRKEAIITSRTLHNFWMRFDKTTPEIFNAVRKIRDEL
QKECKFKNKQTTIESYFTKFS
>SMAR33#DNA/TcMar-Mariner 199-1230 [Schmidtea mediterranea]
MSDEKIVIRALLRHYWKKGLSTRAAVEEICAVEGEGTVKKSAAAEWFKRFNDGDLSLDDKPRCGRPSVLNENALVDALNE
DKHASTRSLATSLGVCNKTVHNHLQHLHYTLKRPRQDPYDLTDAQAKKRVEICQQLLKNPTDDRFWRRIVTCDEKWIYFV
NNNRLKQWVKHGEEPEPVIRQDRFGKKVMLSAWWNYQGVLHYEFIPDGHAVNAELYCEQLDRVYNILKVKYPALVNRNRV
LMQFDNAPCHRARLTQQKIDELSGVEVLPHPPYSPDVAPSDYGLFRSMQHFLRGRKFTTLSEVEQACQQFFASKDQNWYF
NQIRLLVERWQLVIDNGGLYFDE
>Sagan-5_TMe#DNA/TcMar-Sagan 369-2683 via genewise with Sagan-10_TMe, 2 introns (768:802, 1275:1343) [Tuber melanosporum]
MQQPRNVCASTELDKPGLLKQLHHxxVQVLRARKCRKKxKQLxLLQxQxCNQDQDxQIAEVAIAxVSSSREKxHRYRERQ
RLRSGxTPVIPLTVRERARRSYAKKRQSKLKHMxADQATLQVTMHIKHERLVRSRRLAYSNWPHLAGPLRIFKEEILESG
LRRLKIKINSLNKKGGTLSNSLQLDWNVQLYAFIKLQLKGERKWKSEELKWGPTDLIIQPKSRKELAFLVAKSAGWGTSV
MNRILAQEVEYIQSGKTPVPKQGKHPKVVSWLTDEGTMLAMREYMSLAGEAMDSSGLAQAITNYWTETYRDEITEDIIEQ
PVISTAGIHRRIKKALSSRAARAWLLKLGWNWKEVKKGIYKDGYEREDVIKYRDTIFLPRMASLKPRIVEWDETLEVIPK
EYEAGTRPIVFITHDECTFNSNDGRKRIWIHEDKAPIRKKGRGQGLHISDFLTPIGRLGAGSISETLKCGGDVWWTGELL
LKQLTEKAIPAFEKAFPGCQGLFAFDNAKIHQKHASDALLVSNLNLTPGGKNTVPMRDGYFTLPDYPNSVQRQSMMLPDG
RVKGLRLVLQERGLWPSNRRLLTQCSIPGDKPGERKPNPACKFASNASCCARALLASQPDFQAQKCQLQETLEAAGHQVI
FYPVFHCELNFIEYFWGQAKVYTRAHCEYTFPSLVRTVPEALAQVSNILIWKYYQRTLRIMDAYRNRMVYGSEEFKRHVY
TRYSSHRRLSELDLHVI
>Mariner2_PPa#DNA/TcMar-Tc1 664-1683  [Physcomitrella patens]
MRSIPRSLQDNITSALLHSQKSYGQIASELGCNKATISRLAKKITFNRKNLKLGRPKKLIVVDERTIICQINTRKAENAI
EVAKNLNNIINNLVSIQTIRNVLKKWNMKAVVKKKKPLLSTRHRKQRLDFALKYKEWTMEDWKRVIWSDETKINRFGSDG
RKWVWKQKGQSLLDKKIQEIVKHGGGNIMVWSCMGWNGVGRMAEVEGRMDAKQFVEILEKNLLPSIEESGIFEEEVIFQQ
DNDPKHNSKLAWKWFDHHGIKVMDWPAQSLDLNSIEHLWEHLKRQLNTWKIKPKEVWKLWKRIATEWNNIEAILCQKLIE
SMPRRLEAVIKAKRGPTKY
>ITmD37E_Ele11_tp#DNA/TcMar-Tc1 154-1151 via tfasty with Tx_mos_tp, 1 frameshift. [Aedes aegypti]
MPSKQEEQRIKILLAHRENPSYSHAKLAKSLKVAKSTVTNVIKVFGERLSTARKPGSGGNRKPEAAATTKRVAGSFKRNP
NLSLRDAANKLGVSSTTVHRAKKRAGLSTPNRNDKQNTTAKARSRRLYTTMLTKFDCVVMDDETYVKADYKQLPGQEFYT
AKGRGKVPDIFKHMKLSKFAKKYLVWQAICTCGLKSSIFIATGTVNQEIYVKECLNKRLLPFLKKHGCSVLFWPDLASCH
YGKKAMEWYAANNVQVVPKDKNPPNTPELRPIEKYWAIVKRNLKKTKKLLRDEKQFKANWRSAAKKVDKVAVQNLMAGVK
RKARQFGFGKAEA
>Mariner-6_DY_tp#DNA/TcMar-Tc1 343-1269  [Drosophila yakuba]
MGRGKHCSVEERRMIFNLTESGNTPAEIAEIMKCSRKMVYNALKVAKENTAYLTNQKKRKPKPRKTDPRTDMLIVRKSKA
DPFKSSREIMEEINKECGTNVSRKLVARRLNEASLFGRISRKKPLPSKRNISQRLSFARAHRDKDLSFWKNILWSDETKI
NKVGPDGKTFVRRPKGQALNPRYTMKTVKHGAGSIMCWGAFSWRGVGPLYRINGVMDRFTYADILKNQMEPFTFENMPLK
WTFQHDNDPKHTSRVVKKWLKDESIQVLERPAQSPDLNPIENLWNDVKVMISKKKFSNLDDLWKGVQEA
>Mariner-22_DK_tp#DNA/TcMar-Tc1 340-1335 via tfasty with Mariner-12_DAn_tp, 3 frameshifts and 1 stopcodon. [Drosophila kikkawai]
MGSAKPLNDEEKGKIQAFMEVGLSLQEIAKKKTNRSRKVISNYLKNTQNYGKNIKGRTSSAIKPADRRAILRHAPNSHDS
AAKIREKSGVKASLGTVIHVISKAEYLKRRKxKKKPPLNTSRKAQRLVFCRANMSLNREWYLVLFSDEKKFNFEGPDGYI
FYFYDFCKEEHFLKKKHSREGGVMVWGAISYYGTLQLQFLTSRMNATAYKEVLEKALPEAKNCFGNLEWKFQQDNAPIHT
ARIVKSWLDKVNVSILQYWPPYSPELNMIENVWEWLARKVYESRKQYDNKNDLINAIQAAWSTISLDYLKSLCDSLPSRI
FEVIHNRGGSTHY
>Mariner-13_DRh_tp#DNA/TcMar-Tc1 8-820 via tfasty with Mariner-1_PPc, 1 stopcodon. Fragment. [Drosophila rhopaloa]
RHSKCNQLQTARSADARGSAVCNLAKxQLRVLFTSVRKHFADSEPKQREVRLERVKELLRLAESGQLPNIVFSDEKIFTI
EQFVNSQNDRVYLTDRSCENLSHRLATRRQHPPQIMDWAAVTADGRSPIVFIEPGVKINAQYYRESILKVALKPWADNHF
GDRPWTFQQDSAPSHKARLNQEWLENNVPNFITSTQWLWNSPDASPMDYSLWAILESKVRTKRYTSLEELKKAVVREWAK
IPASHIRPACDSFLDRLKTIVKAKGGHIEKK
>Tc1-1_Xt_tp#DNA/TcMar-Tc1 394-1416 [Xenopus subgenus]
MPRSKEIQEQMRTKVIEIYQSGKGYKAISKALGLQRTTVRAIIHKWQKHGTVVNLPRSGRPTKITPRAQRQLIREATKDP
RTTSKELQASLASIKVSVHDSTIRKRLGKNGLHGRFPRRKPLLSKKNIXARLNFAKKHLNDCQDFWENTLWTDETKVELF
GRCVSRYIWRKSNTAFQKKNIIPTVKYGGGSVMVWGCFAASGPGRLAVIDGTMNSTVYQKILKENVRPSVRQLKLKRSWV
LQQDNDPKHTSKSTSEWLKKNKMKTLEWPSQSPDLNPIEMLWHDLKKAVHARKPSNKAELQQFCKDEWAKIPPERCKRLV
ASYRKRLIAVIAAKGGPTSY
>TXZ19_tp#DNA/TcMar-Tc1 390-1505 wised with genewise (1 500 bp intron) and Tc1_TF and Quetzal [Xenopus laevis]
RCKPLIRIKNRKARLDFAKKHLKKPAQFWKNILWTDETKIKLYQNDGKKKVWRSRGTAHDPKHTTXLIKHLGGSVKAWGC
MAASGTGTLVFIHDVTQDRSSQMNYELFRDIGGNSQKCRCSQIXIGRYFIIQMDNDPKHSAKATQEFIKAKKWNVLEYPS
QSPDLNPIEXAFHLLKTKPRTERPTNKQQLKAAAVKTWQSIEKVKKQNLVMSMSSRLS
>TguTc1_tp#DNA/TcMar-Tc1 368-1390 [Taeniopygia guttata]
MAKTKELSKDVRDKIVDLHKAGMGYKTIAKQLGEKVTTVGAIIRKWKKHKRTVNLPRPGAPCKISPRGVAMIMRTVRNQP
RTTREDLVNDLKAAGTIVTKKTIGNTLRREGLKSCSARKVPLLKKAHIHARLKFANEHLNDSEDNWVKVLWSDETKMELF
GINSTRRVWRRRNAAYDPKNTIPTVKHGGGNIMLWGCFSAKGTGQLHRIKGTMDGAMYRQILGENLLPSARALKMGRGWV
FQHDNDPKHTAKATKEWLKKKHIKVLEWPSQSPDLNPIENLWRELKVRVAKRQPRNLNDLEKICKEEWDKIPPEMCANLV
ANYKKRLTSVIANKGFATKY
>Mariner-12_DAn_tp#DNA/TcMar-Tc1 331-1323  [Drosophila ananassae]
MGKGTVLSLEEKSKIEAFSESGLSLHKIAEKMGRHRKTIASFLKNKQGYGKNMKGGNNRVISEADIRSIVRHASNSHDSS
TKIKEKSGVEASKSTVLRVIKKAEHLKRLKLKKKPQLNKLRKEMRLNFARSHMTWSKEWRFVVFSDEKKFNLEGPDGYNY
YFHDMRKEEHILDRLHSRVGGVMVWGAISYYGTYELQFLTPKMNAMAYNNLLKTAFPHFQNCFGNLKWRFQHDNAPIHTA
RSVKSWIQGQNVDVLAWPPYSPDLNIIENVWGWLSRKVYESGKQYSTKLELIDGIKEAWSSISLQYIEKLYESLPSRICE
VLENGGGTTHY
>Mariner-7_DBi_tp#DNA/TcMar-Tc1 378-1394  Mariner-6_DAn_tp very similar [Drosophila biarmipes]
MPKTRELTLELRAEIVTKFKAGIQQLKSLNCIKFRAEMLYYLVKKRDTTGTLKNKKRSGRKPVLDQRQCRHLLVVVASNP
SASPLKIAQESKNIIGKQISDSTIRRRLKEADFNTYVVRKVIDITPTNRTKRLQFALEYIKKPLDFWXNVLWTDEAAFQF
QGSYSHHFMHLKKNQKHLAAQPINRFGGGTVMSWGCLCYYGFGDLVPIEGTLNQHGYVQILNDHAFVSGNRLFPTYEWIL
QQDNAPCHKGRIPTKFLSDLNQAVLPWPPQSPDLNIIENVWAFIKNQRTIDKNRKRDGVIAEIDEIWSKLTLEFAQTLVR
SIPKRLQAVIDAKGGVTKY
>Mariner-7_BM#DNA/TcMar-Tc1 377-1402  [Bombyx mori]
MGKNKSCDPTLRKIIMKFVERGWSYRRIAQHLNCSKTMVCNAVQHFKRYNTALNVSRTKRSRKTTPQEDRMITRLAKKDP
FLGSILIKHEVFGANERAGVSARTVRRRLVEAGLFGRVARKVPLLKKEHRNARLAFARKYGHWTYAQWQHVLFSDETKVN
LISSDGRQYVRRPVKAEMNPRFTKKQVKHGGGNIKIWGSFSGRGVGPVRKVQGNLDQHQYKAILEETMLPYAEEHLPIIW
TFQQDNDPKHTAHSVKSFLTSQFVSVLDWPANSPDLNPIEHLWHEIKKKVATYRNTNLDELHEAFCEAWANIPVETCQKL
IMSMPHRCQAVITNKGFATGY
>Mariner-9_DBp_tp#DNA/TcMar-Tc1 321-1364 via tfasty with Mariner15_CB_tp, 2 stopcodons. [Drosophila bipectinata]
MPHGCLLREEEKGRIRAYNDAGFNISKISRIMGRTRCVITKFLNDPDGYGLKRSSDRKPKLSDRDKRSILKKASNSFLSC
ASIAASCSLPVPRMTIWRTLQASEFIVRGVLKKAPFLKPQHKEARLQFAEKNLETNWASVWNFNSILFIRIxSIFLTxII
FSDEKKFNLDGPDGFRHYWRDLRKDPLMFSRRNFGGGSAMVWGAFHASGTLNLCFTSSRMNSTDYKKVLEDRLLPFLNQN
EERKYVFMQDNASIHKSKETQRFLNEHSVKVLDWPACSPDLNPIENLWGILARRVYANNTKFDTVNSLKQEILAQWALLD
QNMLKTLIKTMTKRMFEVGKAQGGVINY
>Mariner-11_DBp_tp#DNA/TcMar-Tc1 331-1427 via tfasty with Mariner-4_DBp_tp, 1 frameshift and 1 stopcodon. [Drosophila bipectinata]
MGRGTSLSHKEQIQIQSYIDCDLSVANIAKKIGRSRKVMHNFIKNKQNYGKNTKGCQSSVLSDTDKSAILREASNSHDSV
SKIRAKAGVDASKTTVWRVISKAKHLKRLKLKKKPPLNPKRKEARLTFCRVNMSWCNEWRRVVFSDEKKFNLEGPDGYNY
YFHDLRKETHQLERLHSRVGGVMVxGAISYYGTCKLQFLSSNMNAKTYLNVLEKAFPPLENFFNHLPWTFQHDNAPIHTA
RVVKSFLKYKNVETLNWPPYSPDLNIIENVWGWLVRKVYESGKQFSTKDELIDAIQRAWATISLDYIKSLYDSLPNRIYE
VILNKGGSTHYQINIYIYINTYYCIKTHFLILKFIKYTLKKNVLFM
>Mariner-10_DBp_tp#DNA/TcMar-Tc1 368-1384  [Drosophila bipectinata]
MGPRTSLEKREDVLRHFKNGLSRRKIAEMVALSDSTVQSIIYRFVRENRTHDKGRKAPNKIFNETDERYIVRKIRENPKL
SAPKVAAQVETELGKSCHPDTIRRVLHSQGFNGRIARKKPFISAKNQKARLKFAMDHMNKDETFWQSVIFADESKFNIFG
SDGASYVWRKPNTELHNKNLKATVKHGGGSVMVWACMSSAGVGKLHFIESTMDKTQYLDVLKKNLVQSAEKLGIQEQFRF
YQDNDPKHKSGIVQTWLIWNCPHVMQPPAQSPDMNVIENLWAILDQNIRKRQIKNKKDLKNALEEEWEKITPDVTKKLVD
SMPKRLKMVIDNKGGHTKY
>39946842_MG#DNA/TcMar-Fot1 gi|39946842|ref|XP_362958.1| hypothetical protein MG08479.4 [Magnaporthe grisea 70-15]
MESSNCEARIILALNELRSSKKKSIRKVALIYNVPKSTLHDRINGIASLANRRPGNQKLTEREEEVIVQYILDLDSRGFP
AQIADVAAMADHLLAARDARPVGKQWAYRFVQRRTELKTRFSRAYDFQRALCEDPDALNAWFQLVANMRAKYGIQDCDMY
NFDETGFMMGQICAGMVVTGSERHGRRKKVQPGNREWATAICCISGDGYDIPPYIIVKGFYHLSNWYTEGGLPDTWRLKP
TVNGWTDNETGLDWVQHFDNHTKSRTKGVYRMLVLDGHGSHRSPEFEGYCKDHNIIPLYLPAHSSHLTQPLDVGVFNVLK
RAYGQKINDFIRAHITNISKVDFFLAFAAAYKKSMTKENMAGGFRGAGIIPHSPEMVISKLDVRLRTPSPKELDFSSTET
WVSQTPHNPTEAVNQSTLVKSRINCHQGSSPTPIFNAVKQLAKGLESIAHRTTLLEAENHSLRKANEALSKRRRAQKTRI
REGGSFTIQEGQNLLQSNGADGLIYEKKDENGEGSSAQPATKRRCGNCGKPGNNARTCQEDAEMSDVHISDCIEVN
>Mariner-5_PGr#DNA/TcMar-Ant1 256-1361 via genewise with Mariner-4_MLP, 2 introns (728:785, 996:1080) [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MQITGSMRYNATFKFIVVKAALDGFSLVEINERHGSTVSADSLRRWYELYEKTRSVVCDPNTYQVRGRPLALSNEERTYL
RELIAENPAVYLDEIQTRLLEEHGTHISLQTISNELHQRLRLSRKSIRRVHPSQNIDRRMEYILMIAHHDPSTLVFTDEC
GICLDGVVRTRGWAPVGERTARVPTSRATHRFNVVPAIGLNGLVAVLVQEENMYRFDFEYYLENILVRPQSVLVLDNSSI
HHGGRINAIIEARGCLLIYLPTYSPDLNPIEKGFSVLKANLRRYGEMLGGADDREEIEAFAHIVFTPQLVRSLFRGSGYL
D
>Fot1_FO_tp#DNA/TcMar-Fot1 155-1783 gi|102015|pir||S20466 hypothetical protein - fungus [Fusarium oxysporum]
MPVYSADDLENAIADFKNGVSLKTAAKKNGLPPSTLRGRLTGAQSRQVARQEQLRLTTDQEDDLERWILRQEKLGHAPTH
AQVRTIVRSVLARHGDHAPLGRKWTTRFVERHPALKTKLGRRTDWERVNAATPANIKRLFDVYETVDWIPPERRYNADEG
GIMEGQGVNGLVIGSSQESPNAVPVKTATVRTWTSIIECISAVGVVLHPLVIFKAKTIQEQWFRREFLQKHLGWQVTFSK
NGWTSNSIALEWLEKVFLPQTAPADPADARLLIVDGHGSHATEQFMAKCYLNNVYLLFLPAHCSHVLQPLDLGCFSSLKA
AYRTLVGEHTALTDSTRVGKQRFLDFYARAREIGFRKVNIRSGWRAAGLWPVNINKPLASRWVMVLTKSALPPSETLDIA
TPKRGGDVVKLFSAKSSSPSSRLSIRKAAAALDKVAIELAMKDREIERLRAQLEAAQPKKKRKIRQDPNECFISLAQILA
EANREPDQRVIQSQKGDLDCIVVDGKSSSESEEDPAPVRRSTRVRRATKMYIRQDLSSEESD
>Mariner-4_SM#DNA/TcMar-Fot1 352-2247 [Schmidtea mediterranea]
MIKKFLKLLFLNWGKVDTLTLFWIFLVKLNLKLFVFCLEMPRKYTRKTDMTNNYSEESLLQAVNEIQNGMPLLTAAKEFG
IPRSTLRRKCEGNMEKWGKKSILTLSQEQVLLERVMHLCSRGFPLTIDKFRQAAYHFAKVLHRRKMLETLPETWTRDKTA
SYEWWYSYKQRFPQLALRVAENLSSSRAEAFNKHRVTSFYEEASQVLNNAGVSSSPHLIYNCDETGLSSVPNKSRKVLAE
KGKRIIQQIQTGERGTLTTFLPCCNANGEYIPPFLIFKGQHIPQSSDYPPNTRLMASRSGYIDMDIFLSFLQHFECHRNH
EIGKKAILFLDGHKSHVSAQAVEYCSQVGIELVCLPPHSTHRLQPLDTHFNKGLKSKWSANLAEFLRNNSKVQLCRQEFY
KVFNPTWAAFTERRSLLVDAFQYCGLFPCRDPTTNNDFQMALNFVTDTKQSSTLHESHDLPAQTAIRIIAPSPRKTPNPV
HLKQHIAHITSPTMMMKLSQRNNSHSSGGSGQAPQSSFNEANAESPMHGSAQGHLRTLPQNVPSTSSGVNHGSHGYLPQP
PKKRAKRCIPSQHHSKKTKQVSVKESRTSNNCVVCDEEYSNSSVDWFCCPGCHNWTCEMCFASDLCYNCSD
>Mariner-1_AF#DNA/TcMar-Fot1 95-1762 [Aspergillus fumigatus]
MPPKARINSKNSVEQEGRVLLAVSALKNKEILNIREAARVYNVPYTTLQRRLKGHTFRAELRANGHKMTQNEEDSLIRWI
LSMDQRGAAPRPSHVREMANILLAQRGSTPTQTVGEKWVYNFINRHDEIKTRFSRRYNHQRAKCEDPKIILEWFNRVQIT
IMQHGITLEDIYNFDETGFAMGLVATAKVVTRAEMLSRPFLIQPGNREWVTSIECINSTGWVLPPCIIFKGKVHIEGWYQ
DTALPADWRIEVSENGWTTDQIGLRWLQKVFIPATTSRTTGRYRLLILDGHGSHLTPQFDQICTENDIIPICMPAHSSHL
LQPLDVGCFSPLKRAYGRLIEDKMRLGFNHIDKFDFLEAYPQARTAIFSADNIKSGFSATGLIPLNPDRVLSQLNIQLRT
PTPPGSRSTNSVPKTPYNLKQLKKQETTLKKLLRERTYSPPTPTKAVLGQIIKGCEMAMNNAALLAKENHDLRAAHEKHL
QKQKRSRRQIETAVGLSIQEGQEIIQRRDQAAEAIPTIPPEQVVDTEQRPQRAPPRCSDCHILGHRRLQCPQRKNN
>42761524_DD#DNA/TcMar gi|42761524|gb|AAS45342.1| similar to Drosophila melanogaster (Fruit fly). RE12057p [Dictyostelium discoideum]
MKPKRSLTHLIEHTERIYNALEYGVRIGNISRAARENGLTRNQLNYYRRDIKDNRIRQSHGGSRSPSTFTTEQRSKAVGP
IGEPVYVTNSTSISETYNGFFTISLDDCLYKIRDKTNNTEDFFQYVRELLESGFCKPGSLLVMDNAPIHGGIEALNALFE
LFNQYSVQLIFLPSYSPELNPIERFFGYIKNHFYRELGFSGDESPHAFPSVVGFSKPKIGQVDSYLLLLTGKIWKKFWNH
AFNDQLCVSS
>Sola2-1_NV#DNA/Sola 1310-3470 via tfasty with Sola2-6_HM, 7 frameshifts and 2 stopcodons. [Nematostella vectensis]
MFCWFLSCNVVHTPFIESLRTVDKEMATKFKLKPGEKLCSNCYDRCCEQHDDSQTSSSDSDSDREAVSYGKRKVDQIQSK
LEAKFARVFNIEIYLRRRMVSVEMLVKILTADAPARRKLKTATRQEKIKLLTLVPESWSRKKIVDTFGVSDHMVWRSRQL
RREKGILADPDPKKGGRALPSDVLERIVKFYESEEYSCICPGKKEFVSVKENNVKVYRQKQLLLVNLHELYVEYKKKYPA
DKVGFSKFCDLRPKCCVPVTASGMHSVCVCEQHQNVKLIAAAIPGSHDYIDLLGKIVCSVSSRECMLHLCESCPGKVEYL
SDIFSTNDFDSDDTVTYKHWAHVDRTSMLCLTSTVSxFIQTTCSSFDSLRTHHFIAKAQSSYLSQLKKDLKEEEAIVMLD
FAENYSFVIQDEVQGFHWNNAHATLHPFMIYYKLAGDLQCSSILKHETTTVHAFISTIVSYIKAELPFIQQPLYLSDGAA
SQYKNFKNFSNLCHHEEDYGLKAVWHFFATSHGKSPCDGIGSTVKRLVARASLQAATILTASQMYDWSSRNIPGVKFFFV
SAADVVENEMKLRLASMIxQSSETGTRSHHCFISISRTELQMKRISADDHFTVTCWCQSWILPSCSLGKYVASIYDKEWY
IGCIVERSEDNDDVFVNFMQHSKTGLLSWPASVRKNACWVPFQNIVCLVSAPELQGQSARFYRLAAEDAAIIQKKLPLFA
>Sola2-1_HM#DNA/Sola 1555-3807 [Hydra magnipapillata]
MMRSSLNIAPGKKLCKPCKQKIAIKEDLKEKKQSQEQDEDFLISSFKSKRQEINEELKNFNISPLKSHSKSSKHILSEGK
RKIARINEMVNNVTRKTESQVNVPSKLCYETNNMKKKAKNFDEIMSLIKEKILCSDKRTIVQLLTLAPPSWSILEVQNNF
AVTEYQAKMARQIFNKKGLLAISPLYKGKVLHKEIEDSVKLFYDSSDLCRTMSGKKDYVSIQKNIHKQKKLLLCNLKELY
VLYKENNPEIQISYSKFASLRPKWCILPGANGTHSVCVCCYHQNAILLVDALNIGLKYKDLLSKTVCSVENKECMLAQCD
NCPGKETLTKYMYEIFGEYEDDFEIHYKQWQTTDRATLLSLTADVSTFVELLVSCFEKLQAHSFIAHSQSQYLNQLKQNM
DQSNIIIIGDFAENYTFVVQDEIQSYHWNTQQCSLHPLVIYYKDDKGVLKHISYCFISDDITHDVTYVYKIFQLIIPILK
TKFSNLSKLHLFTDGCAGQYKNCKSFYNLCQLESEFSLKVEWNFFATSHGKSPCDGIGGTVKRLTAQESLKRPYRNQILT
SEAMYEFCIEKIKVVNFIYIKGIDLQLQREEQKERYTGVTTLPGTRSFHQFIHLGDNRVGAKRCSTDTNYTIIHNLKKKQ
DIFQLDTVTLGGYVAVVYDDKWWIGIVTETNLEEVDVKVKFLHPKGPSICFNWPEREDYCFIPYTNILKKLSVPQACSSS
GRNYVFENAEIEEVQVKWEQYCELLQTQSK
>Sola2-3_HM#DNA/Sola 913-2544 [Hydra magnipapillata]
MKMPLTHAERQRKYRERQMQKFGPDFIKEKDSIRKKEKRNSNVELARLKDKLRKKKSRVSSSKITSNISPAYKSSCTLGK
AVKKAIRALPTSPLKKATVVKQLAIQFNKDLPDMQPTHGPNALNDETKLCVISFFEQDGISRQAPGVRDTIVLRSNKEKK
KMQKRYLTMNISEAYQIFKNEHTDFSISKSKFASLRPGHILLSSLMPRNVCSCQKHENIILSLKALHFIDLKIPLYSHAL
PNTLVCDEKNDNCWNNLCEACKDGKLFLKTYQLDEKNHDKEITWYLWEKVTQLNGTKYLEKAIKKDKAIILYNNVCKMLP
KFLLHYFIKGKQSMSYENQKKVLKSNLDSVLLQVDFAENFSTFWQDEVQSAHWNKKLVTLFTAVSWHGDSCKSAVIISDD
LNHSRSSVIYFIDLLITNLIRKDVKYLQVWSDGPSSQFKNCYIVASIPWLESKHKIKICWNYFATSHGKGPCDGIGATIK
RLATQKIVRREALINDATAFYKAVRDESQVNVFMVAAEKIKTAFDGTELGNIINNACKTPWNI
>25026896_CE#DNA/TcMar gi|25026896|ref|NP_736950.1| putative transposase [Corynebacterium efficiens YS-314]
MVASPKIALTDEEITILKSYKRSRFSLVQHKAEALLLLDDGVAPDIIARFVERRPSTVTTWILEFNRLRIASLYTGHAAN
TNASKLTPAQRAEIATVLSTPPSAHDIPAQFWTVPQLKDWIASNFEVVYDSDTTYHLLLRHAGLSFKYPQVFDKRRGSDA
EIAARMATIRNEIAGALNDPEQVVFAADEVRVEHESEVRKAWIHKGHPTTLSVDRVRQAQSYIGFLSQSSGEVDLLRLAW
QNTDTIIEALTTLMDRHPGKKITVVWDNARWHRSKKLREHLGQGNVLANVRLVWLPPYAPDHNPIEKVWNEAKAAISNRQ
RLVFEDTCIGFETFVGSSTFSYRI
>Sola3-1_PS#DNA/Sola 932-4648 [Phytophthora sojae]
MGGDVCDNLVADIKCYAGRPIDFAVVCSAGNAQSRKPQHQKDAACGARKEGKAEEWSSLQVSQQILRDMGNDTGSELCCV
AYERGESDNTGLKWSRCDGSVIEHDLPHACSPRVERGKSVAIEPRIGVSTPVAIEAFVATAERKSQASRSLSFGMQTENA
DRDLLIDVAGNNEAESVPKSYGEVIHAAEIDATADNSCEQGQSYNNSSPFKSPRLRRSNRIQVERMFVSPPTLTPTPVRR
TLPTIRALLKFFSLPESEVKSFLKHLPSKKTRSTAEFWTDSDSSTTDAAYQRTVASNLVFRLLQCISETLCGTSASSAFL
EIFATWLNPVTCANDTLVTTSANVLAKTRKGSLEYRSVRALLCGSYSLKSLQDICIDVNGVCIGRKAHLAGCRDFQILLD
EGALEVSKVTRQRFDPAVVSEAVRYILSMENVSFLSWGTKTVKLDGERVSVPAIQRRKTVNVMFDQYGHQRTPGNMVSAR
TYYRLAAILTHGTSQPRKAVNYVTGFLINDNFQLLDRIVCDLLPETSTSVLERLDILREWLKYGGAQTFENGQRLEESHC
PRHLIQFGLATPPVSTGDTTKPKKPKKKAPKHSRAKAAQSETKSSARTISEAANGLNASSGATKTLSRAVSCQQCIAMDI
IFADLRQQLEATNPDPTTLEVVDDAYEKMELYLGHRVRVTNQQRAIHETAELIRTKCMDERGSSDAIIVIDFKMKLEPIY
FREKTVDHYGKRGMSWHGALVRYWTYDADASGSDGTRISENKVYVDQISNGDNKQDKESVVALVEGILIVGSRASVPIYQ
ARDVSQSDNASCYQNTFLALMLPLVGASNNIEVVRFIHTETQDGKCVLDAHFATATRKVKAWVRQGHDATTPQEVVTALT
SDGGIPNCIAELVEYNRAKMKFVYEAVEPLAKSLGRLFTRFNEVVYDHPPFTPPSLWKERFDVKTWPSFKLTIFEYSGVG
DGCIVCVCPTLGRCDCNTTHDRNRQKLDLRDDTLDSDIELGNFSSDSEDECEQFEPIGNDAEATSETSTVVALPGGSIGA
LSGIQITRFGQLRMRTSDMRCERPTLGNDPHGRDFSEKDVEAYAKRSLMDMQTGGDFSDIIESTGLGRKVIAAAKKCVKM
TREQKQLAPGWARRQKKGYMYGAKYIALYSEEVEKLFNRGVADASTKMGPARMREFLTKAYPRRYNLPGENEIRSRISAL
LQKQKKSGKALPPRRPTNSKQFSQSQVNGSVATEGGDV
>Gizmo4_EI_tp#DNA/TcMar-Gizmo 762-1771 via tfasty with Gizmo1_EI, 1 frameshift and 1 stopcodon. [Entamoeba invadens]
MVGIKKKILENMLTLLRQGKSIYTKNHYKRQRRTLPFQELVYKGIERDGTISVASLRKTIAQEEKLKMERQQEDVIINLE
IIDEVEVTKEDVNNLAPSKNSITKFMSGKTTKGEERTVPIFSFKRVKTxGVPANTPENMDKKIAAVNELRGLIGGGAKWV
CIDETSWSIASTAAYGWSARGKECFITKARGGIRLTSICAIDLDGFSYCNITPGNNTLASFEVYFKYVLNEYDKLGRYCV
FWCNYCDIHNSMNRIVNGTNHSVVFNAAYSPALNPIENIFGLWKRSIKKDVRIWNGLQELLDKIAEGFKTISGEETQASF
ERVREEIWPIFFAREAI
>Mariner17_CB_tp#DNA/TcMar-Mariner 203-1154 wised with Mariner18_CB  [Caenorhabditis briggsae]
YKFKLVKNAAQALSSLSKVFKQAFXKKLIRTXFERFHNDDESLENREHTVRLKIIDSELLRDLNESDPCQTTRSLSEPFS
CTNGTIENHLHXIGKSNSCGSXSYNHSLLALIRIILLFSKNIAFLDSYVMSDDKVIQYDNTTQNRQRLSLGEPAKTTRNX
EIYGKKVMLCVWWKSKGLVCFEVLEKGLTATTELYXDXLGQMQQALRRQGVNTPTTKFLHDNARPHVSKVTQQKIEEMGW
EVLPHPPSSPDLALSDFQXFISMRPSLAEKHFKSRVETEKWVVAYFGSQPVGFFHSGPHSLRGCWLQVVDNYGKXLL
>HSMAR1_tp#DNA/TcMar-Mariner 188-1207 wised with Gtmar1 [Primates]
MLDKKQIRAIFLFEFKMGRKAAETTRNINNAFGPGTANERTVQWWFKKFCKGDESLEDEERSGRPSEVDNDQLRAIIEAD
PLTTTREVAEELNVDHSTVVRHLKQIGKVKKLDKWVPHELSENXKNRRFEVSSSLILRNNNEPFLDRIVTCDEKWILYDN
RRRPAQWLDREEAPKHFPKPNLHQKKVMVTVWWSAAGLIHYSFLNPGETITSEKYAQQIDEMHRKLQRLQPALVNRKGPI
LLHDNARPHVAQPTLQKLNELGYEVLPHPPYSPDLSPTDYHFFKHLDNFLQGKRFHNQQDAENAFQEFVESRSTDFYATG
INKLISHWQKCVDCNGSYFD
>Mariner-4_AN_tp#DNA/TcMar-Mariner 94-1299  [Emericella nidulans]
YIDLLSKHQHNLFSFLKLSRSQIDRSNQFLWCFEALFLLFLPPCLQFCLRTVHAFLPAILTMPAPHPNELRVQVLSYWAL
GIQPPDIAKMLQINVRTIRDMIQKGQDRGYNPAQCMRVKLEYVEDGKRSGRPKEISEATDMAVLASVKQDRNGREKSSEI
LAFEAGISHSSVLQILHKHGFTIVKPSWKPGLTEAAKATRLRFCLDHQHWTLEDWKAVIFTDETSVILGHRRGSVRVWRT
ARDVHDPTCIRRRWKGSSDFLVWGCFTYDKKGPLHIFEPETAYQHKKSEVEIAALNAELEPILREEWEIETRLKRLHLRG
VPGRVPTWRFTEKTGKLVRKSKGGVDWWRYQQVFSNSFILLYWANQLFSIGNPSSTSYSFCQGLQNRTSRYKGIRGWGPC
S
>SMAR10#DNA/TcMar-Mariner 171-1195 via tfasty with HSMAR2_tp, 1 frameshift and 1 stopcodon.  [Schmidtea mediterranea]
VEYRSVIKFLVLRHVPNGPIFSQLEETYGEDSPSRRAMYKWIALFKHGRQSVFDDQRTGRPCEISDKIKEKCESLLREDR
RITTRALADAVNVSKGTIQAILHEFGVRKLASRFVPRFLSSEMCEKRLECSQANLLLFQQHGEAFLRNIITQDETPLSLY
LPESKRESSEWKFPGESSSKKMRSGTSHRKCLMLSIFWDARGVILVDFAEKTTRLNSAYYSDLVCKCRHARRKERGIPMW
FLQDNAPIHKSAASMRVLEESGFDLLDHPPYSPDLAPSDFYLFRYIKKHLRGKQFENNDELKEAVENFLHDxSPDFFKNA
FSELVIQRWEKCVNVNGSYIEK
>SMAR7#DNA/TcMar-Mariner 176-1202 via tfasty with Acmar_tp, 2 frameshifts and 1 stopcodon.  [Schmidtea mediterranea]
MENRKQHFRHILLFYYRKGKNAVQARRKLCDVYGEDVLTERQCQNWFAKFRSGNFDVEDAPRSGRPVEADEDKIKALIDA
NRRITTREIAERLNLSNSTVHDHVKRLGLISKLDIWVPHVLTERNLLRRINDCDLLLKRQENDPFLKxIITGDEKWRVVI
YKNVKRKRSWSKKDEPAQSTSKADIHQKKVMLSVWWDFKGIVFFELLPDNTTINSEVYCDQLDKLNDSLKQKRPELINRK
GIVFHHDNARPHTSLVTRQKLLQLEWDVLPHPPYSPDLAPSDYYLFRSLQSFLDGKTFTSNQDVKYHLDQFFASKDQKFY
ERGINLLPERWQKVLDQNGEYII
>Mariner44_CB_tp#DNA/TcMar-m44  659-2164  [Caenorhabditis briggsae]
MFQTELRHMRIGQSLCDIDTSIFPKTPTQKHTRNSGEEIMRNVSSSVGIIQEKLGSDCRFTMFSNTAKATAEMCGLSRKT
VIRLTPERDLPQKKLLVTMGKKERCRRYASQLDFVKRVRIVAKIHSLWKEGRDVTVSDLWTFAKDELKFQRGRSVFLYVL
RGLGFVYRQKEFNPIVSERPDIVHKRMLYLQLKKEWDSKNALYGSFDETWAHNGMVRRLAWMHANQGMYKKSKLMDLLSS
QPGPSKGRERGKRVIIAAVITQLGVLKGSELLLVSGLREEDQKQDYHADMDGNNFEIYYRKMIPLFAAEAAKLGRPAVLL
CDNAPYHNAPLRKPPTSTSSRADITSFLTEHGVKFFPKQTKEILYDLARIFIESNGGREAFTVYKFDEYAKSHGVTVLRL
PQYHCFFNPVELLWAQLKQHLRKIGKPEDSVELVIFRYFFPEIVFHLGEKPCQGVPRVFSSNFGRQTVSSHSKIGDRPSR
DDGRRRYDGLRRGVRLELRRR
>36959084_Rhizobium#DNA/TcMar-ISRm11 gi|36959084|gb|AAQ87509.1| Transposase [Rhizobium sp. NGR234]
MARLVFIDETSTNTKLTKRSGWAPKGQRYRAHAPFGSWKTQTFIAGLRSHGVVAPFIVNAPMNRRIFETWIETQLAPTLS
PGDVVILDNVGFHKSERAEQMVKAKGAWLLFLPPYSPDLNPIEMAFSKLKALLRKRAARSFDAIADALGDICNLFSVTEC
RNYFNAAGYEAD
>31212651_AG#DNA/TcMar-ISRm11 gi|31212651|ref|XP_315310.1| ENSANGP00000000892 [Anopheles gambiae]
NDGDRQRIVTAYENGSSALGISAMLNIKLGTVYGIIKQYKATWKVTAKKRGGHNAKLLTQEAVDRIQRWIDEDCTVSLKV
LAEKVFQEYGIRVSTSTVAREVKGFNYSYKMIQRIPERRNAAANIEERTTYAAEFYTLTRDFPVNGLIYLDEVGFNVSMR
TSKGRSAKGTPATTIVPQLRTRNISIICAMNASGIVLYTVHNQAVNREKFIELILELKATLRAKAIARSYFIMDNVAFHK
CSSVKEAIGNNEDKPLYLPPYSPFLNPIENLFSQWKNHVKRAKPNNQEELMEAI
>Mariner-3_ADi_tp#DNA/TcMar-ISRm11 154-905 via tfasty with Mariner-2_ADi_tp. Fragment with internal deletion. [Acropora digitifera]
MRTDELSIMDDILSGGGDVSTEYYPGSFRAIRxKYKVSSVTVSNVWKTFCQKGENLPRHTAARGQPKRLEEPELDFVQML
IKCRPSRTYKDIKKTIETMRNTQTPNVTLNFLCGHNGVMYANTLNGASNMLEFLNLFHEASEFTQPDGNPNLEHGDIIVV
DNVALHRFNGGQALAEWLDGFRGTRLYLPLYSPELSPVELVFNKMKTMLHRYEYRDLLRFNIDVAIYRALQDISVSDLRG
FYSQVGYFNIV
>39579820_CB#DNA/TcMar-m44 gi|39579820|emb|CAE56580.1| Hypothetical protein CBG24321  (better C terminal 10 AA taken from gi|39578897; presumably 39579820 was spliced) [Caenorhabditis briggsae]
MMALGEVVAKMTTVDVIKPAGDHRGSQILQNGIKQLENLKKQMGKFARETIFGSVMKLARAMFGVSESTLTKAKQFLSKA
KDRHVDTRKLRNSTALKHLSEEEKQIILDHIDKCHEEDANFSISTLHADLEHQYGYSYSPSTLYRQLRALRLSFKLKQYN
PFATIRKDIIEWRRKYLKLMDKLILEGAFICYYDETWIFHGMTKIRGWNHVDTNPYLITHWGNLNNPRPGFPAASDKGQR
AIVLAVTTESQILPESIDIVVSKRPDSEVLVDYHQYINSEMYKKYMMKVLPMIVKATPAGREAVLVIDNASIHNSVVEKI
PTKNSSKQELLTFLSTRGISSSVIASKNDLWIEVQDFFKRNGGRKELMRYEVDEYAASLGVTLPLIYKFWNF
>SMAR30#DNA/TcMar-ISRm11 232-1437 [Schmidtea mediterranea]
MKIDENISLDKSENQLNNTTSNEQNFANQQIRSIFQQQAELDLPNPLTAETNSDTAVIQIRRYNRSAYNTTSLDKKKIFI
KCYEEGKTIVEAAEISGINKYTAASLLKRYKNDGCLILQKKRGGKRTAKITSEIMSAIEDIVEQNPAITLKSISKKIMDE
KHINLTTTSINNALKRLRITLKTATLNLDRLNSPSTILQRKEYALNFSLNAPIIREKIVFIDESGFNCHLRRTKARSKIN
TGAHVIIPTLRGRNVSLIAAMNLHGIVHKQIIANSTVNANVFINFLDGLFQTLREANITCAWLVLDNCTIHKTQEVRDKV
GTTSHTLVYLPPYSPMLNPIEKVFSKTKLCARNLLAESRTDLNLENVIQESLATVTQSDCNNYYVDMTMKLPLATGGQPL
H
>BEL-12_NV#LTR/Pao 20-5416 via tfasty with BEL-5_NV, 2 frameshifts and 1 stopcodon. [Nematostella vectensis]
MNTEDYYLGNMSENEASSEVERIESKKRSLGGYLGRVSIHMKELKTCLDDPSRANEIQTALNELQSALNNYEDCYQSYIL
EELATDEFNRVKEKFEETRNECETTTKLANERLKKGKSNSTKSRLSSRSRKLREKIEMKKLLLQQEEEIAQHRMDLERKK
IELEYEQKARACKLKFQVQIAEKEAELLEERGSESDSCVSEEYKGDVGVMPPMSQEEKLMKWTEQCDPIPDNPRPDTPKL
MEGPSHPKDPIPERKPQINDQEAPPSSYRKTPFGFLPVNSTDIMLKLTMLQAMQPVKFSGNPSDFPNFRKRLRDNLEDEI
LSDSQKVEFLPKFLSGEAFEVVERVSGCSYSVIVDILEDRYGQPATVAASCIDNLTRGPRLNNHDYKGLRDFAEQLESAS
KKLVGEYAIEASTISNMKQIVRRLPQYLVNKWGDVSYKIREKGGIPKISDLADYVKRQAAIKNDPGFVNLSMSENKGGGD
KRPEQGGKGKNYQKQTSVFKTDMEGSPPETTMGKQAPIKTCPCCQGEHRLSDCANFKGRDLPGRWRLVKEKRLCHICLRP
GHMRDRCHTTTFCNCKSERKHHTLLHNPPRAKDDPPKELNSSAGEGTTEGPPRRDHAQGTRGGEPHRQTEQYATFSERAT
KTVLLHVVPVKLIAPNGNSLTTYGLLDNGSRGTMISSEVSAKLELKGHTEEISITTMMGSSKEQIEVVEFELQHASGEGD
RIPVTEGLVTKKFNVNEKCLPKDIDREAHPHLRDIEIPSVDMPKVSVLIGKDRWHAHEVFEVRRPATKASDLKALRGPLG
WVITGTLQGETSCKEVNLNFADYKKELQHQIERFWDLESFGTKSVGTDKGSPSFISHHLSREDRKAIDKLEKTITKRDGH
YETGLLWRDDDVTLPNNRNEADKRLNSLKRKFSREPGLEEKYRAAMEKYITKGHARKLSPEEAQETGPRTWYLPHFAVTN
INKPGKLRIIFDAASEYQGTSLNKNLLHGPDCTNSLTGVLLRFREDNVALVADIEGMFLQVGVREEDQDSLRFLWWDKSS
DDPPEEYAMNVHVFGATDSPCAANWTLKKTTTDNAGDFGDTTIETVLHNFYVDDVLKSVDTSASAVTLANELTELCGRGG
FNLTKFMSNSREVLAEVPIEKRAAPTLDLDLDELPVERALGVRWNVETDTFGFKVSNTEKADTMRGVLSTISSVFDPLNF
AAPVIMRGKQIMQALWRRKAPWDEPLSGDILRQWQTWKRELVRLEDLSEDERWLNGPSFLRESEDQWPDNKFDALSEESL
EIKKEVFFTDLEPGDGLEKLLTDTSDWMKTIRKVAWVMKFVEWLKTRKHAKPTEKTPGESENKLSPDDIERAKRRIAVLV
QRESFPEEVKALKAGKEVNVASAILKLKPVMKGDEVMRVGGRISMAPMSDDAKNPMILPKQSHITTILIRHLHESNGHCG
VEQVLSLLREQFWIVKARVAIKAVLGRCIHCRKQRRTTLKQEMGDLPRIRMIPYEPPFTYTGIDYFGPLYVKRGRGRVTE
KRWGAIFVCMNSRAVHLELAKSLETDDFILALMRFLNRRGHVVELWSDNGSNFVGADREIREHLEGMDHDKIGRECSAKG
CKWIFNPPGATHMSGVWERMVRVVKRSLKAILGKNPLNDEVLTTVFTEAERIANSRPLTRNPENPDDEDPLTPNHFLNVR
PTMNLPTDTDERADKYSRKRxRQAQLLANHYWRRWLKEYIPSLQVRSKWNRKQRNLHVGDIVLVADDNVGRNNWPLARVI
NVFPGVDGLVRSAEVRGKGTTYKRPVTKLCLLEAEDEDV
>BEL-11_NV#LTR/Pao 28-5331  [Nematostella vectensis]
MATIASKRKTRAGHRAFVTRFMAEGCEEKSAVEVLRDRLQILKTLDDEVLELMSRDDVFTEEDVEEETVNAGKIETTIRE
KILALEAAEETSRRNSVASEIQSEAAASSAQDQETRARLPKLRLKNFAGSVGEWQEFWDGFESSIHSNPRLATVDKFNYL
RSLLVGPARGAVAGFALTAANYQSAIDLLKRRYGQTEKIKRAHINEMMKVRGVTSEKDAAGLRRFYDAVETKHRGLQALG
VEAAQYESILVPALLEKIPEAVRLSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQEQNRGKQGPNSASALTT
AGTRKRCAFCLGEHQEDECSKVKLPKDRINILRKFGRCFICLKKGHRSNECFNKDGCSDCRGRHHVSICYERERVNENVT
NGASVTETSVHVCTGGLVALQTAQGIIRGERSVKARVLFDAGSHKSFITSKTVKAAGLKGVRKEWLEISAFGQKGKDSGL
RDVFSFEIHPIRGGESVKIEAYEVPSITQIRNVHVEQRKLEYAHLQNLWFSDVNRKDEVLEIEILVGSDSLWQFQNGRTI
RGARDEPVAIQTTLGWVLSGPLQGDEGGVSNVNLIGRDLSSSNVESEVVKLWDYETLGIREENEVHESLKDGIVFTGERY
RVKLPWKEGIECLPSNYGNSXTRLRGQLARLQKEPDIRAEYDAIIKQQVESGIIERVYELESANKVHYLPHHAVVRKEAK
TTKVRIVYDASSKERKRGVCLNDCLHVGPALTPLLYEILIRFRQRKIALVGDIEKAFLNIEVDEADRDCLRFLWVNDVEA
KEAAPIIYRFCRVVFGVNCSPFLLNATLRYHLESFAKEEPEFVRVMKDSFYVDDLVTGAESADKALELFEKARARMATGG
FKLRKWLSNDEKVTAEIRERENDVTLCDRETNVTVRDSVDTDSDEATYAKAMLGVKDEMSVVDKVLGHEWNCKNDEFRFD
LERLADKAAGVNVTKRNTLKVMASMYDPLGIVSPIMVSMKVLFQELCVEKLDWDEELTGERKKRWLSWLDDLKRVKEVRI
ARCVYGGSGAEVTYSLHGFGDASKKAYCAVIYCVTELYGAYHVELLTSKTRVAPLKEQTIPRLELMSGRVLAQLMAPVVN
AISGEVELSGRRCWLDSKTALCWINNLGGWKQFVKQRVNEILRLTTKADWGHCPGIENPADIGSRGALASELVNNQLWSK
GPQWLARPESEWPVTEKIVETPEKCSEECKRGTAALTNVTKQSVASVVDIERYSSLTRLLRVTAWVGRFVNNLRLGLKGE
TIVTGALTIDELTSAELLWVKAAQSELRSAKHYKDLVKDLGVQECDGVLRCAGRLGNSQLENDTKNPILLPRGHKFTRLV
MDSCHARVCHSGVRATLAELRARFWVPKGRQAVKKSVSECVVCKRVQGRPYDKPPIAALPEFRVSEAPPFSKTGVDFAGP
VYIKGHEGMKKMYIALFTCSVTRALHLELTEDLSTRSFLNCLRRFCARRGTPALIVSDNAKTFKSAAKFLNELYDQPDIR
TYCEENRIQWKFNLERAPWWGGFFERMVGTVKRCLKKVLGNARLNCDEMQTTLVELEGTLNSRPLTYEYDEVGAEMLTPS
HLLFGRRLLNLPDELRDDEDEEVNGMMKRFRYLAKKRRHFWNRWFKEYLVDLREQHKAVNSGRKVAEVGDVVLLFDETLK
RSEWKMAVVEELIQGPDGQVRGAVIRVLSRGKPIRMKRPVQRLYPLEVKCAEGAGVSKTVEGIEVPNERPKRAAALDAQW
RTRSMIDS
>BEL-15_DP#LTR/Pao 961-6116 via tfasty with BEL-3_DYa, 3 frameshifts and 1 stopcodon. [Drosophila persimilis]
MPGKRRGMSRQSAEVDDVDSLDTLRKLSAVKKDINRTWSLLKDKQSSFSKAQLECRMEILESYIERAFQFQVEIEDVNPD
LASRAELEDLCIEAKSTLKSMSAKFEQRTANESVLNTTIATNRHLPPVKLPKFSGDYTEYKHFIGLFSSIVDSDPTLSNV
EKFNHLLTCLEKEALGVVQAYPVSEQNYPKALSALMKVYDNDCLIFLNSIARLFELQSMQGPSASGLRSLLDTASAIYES
LLSVGDNKQISDALLIHIVMSKVDQKTRFRWEENLDYQSIPYWTDCVSSLNKRYQHLSAEETNSGQSRGKKTSQDSKSKQ
SGKTSLTVAQAKPSQDQKCSFCKATDHFITSCSDFAAASVATRFQFANGVPLCINCLRKGHIVSKCKSSHCRVCSKPHHT
LLHRYTTDSSTSQAALDNPPAILNARPLVSNHAMAHDNDQVLLATAVVDIKGSSSQHQPARVLLDSGSQVNFITDELAKS
QQLKRTRKHISLLGIGKSSLSAYQVVQTTICSRIHPFEMVADFVILKSISSYHPEKAVPPDSLMDATESYPLADPVFYKP
QKVDLLLGADAFFDILSNGQVKQGREALTLQNTVFGWVVSGRCKSKGPQATxTCSMVSTVQEACPLDSLVKRFWELENVP
NASIERLYTPEETMCEKSFIDTITRLPSGRLQVSLPFKSSPTSLGSSFETARRRFLSLERRLCQKPAIKSMFMDFMEEYL
SLGHMTAMENSIPAEPHCFIPYQCVERPQSTSTKLKVVFDASCKTTSQVSLNDLLMVGATIQPCLYATLLRFRCRKFALT
ADITKMYRQVELDEAHRKFQLIIWRRASSDPLQVFRLNTVTYGTASAPFLAVRCLKYLSETHLNSHPLGSKSLASDFYVD
DLLTGASTASEILEPAGFVLTKWTANCQLGDSQKENLVISSGDQQDCKTLGLMWNPQADIFKYCLKPIVSSETTTKRVML
SVISSLFDPLGLLCPVITNAKIFLQEIWLLSLGWDDPILLKLQQRWESMVSDMQRLHEVTIPRFVGASTSTRCQIHGFAD
ASTRAYGLCIYARVSHSNGVSVNLLTSKTRVAPLKTKTIPRLELCAGHLLAKLWEEVRSIIDCPVEKVILWSDSEVVLHW
LQTHPSQLTTFVSNRVAEIQEITSTASWRHVPTKENPADPVSRGSSVADLDSLFWFNGPSFLQQNAMDWPQNRHLRLTEA
DASLEKKKVATSLVAADGEHNPILTLIENSSSYMIVVGTIAYIRRFINKRKGVIWSSTFPSSEELGAAFLAAVEAVQRDA
FSQEIDKIKKSSKLQASLQKLTPFISEEQVGSCSFSLVRVGGRLLNAPLAHNAKFPLLMPKNCRFVTLYLSYLHRANCHA
GPRALVGFLRQSMWLINARRECSAIVRKCVHCFHYKPKLLSQIMGNLPADRLRGNRPFEISGVDLFGPVRVSLGIRGKQP
LKMYIAVFVCFASKAVHLDIVKDLTSNTFILCLSRFVGRRGPLVKLYCDNATNFVGAARMLKERMDAFNAKDEDLKAYAP
AHSFSVEFIPPRAPHIGGLWESAVKSAKNLLLRAVGSAVLKEDELHTVLVDVEAVLNSRPLVVDSGSPNEGEVVTPAHVG
RTLVSLPPESELPRPDSSLSYLQRWQLVSAIKQRFWRDWSRDYLLSLQQRGKWSEEVANLEPGRVVAIHKDNVPLQMWLT
GIVEKAIPGADGKVRVAVIRTKAGVHKRSIHRLAPIPLD
>BEL-22_CQ#LTR/Pao 23-2377 Fragment (N-terminal third) [Culex quinquefasciatus]
MDPERLKSLTNKRSVILAKVKWELSVANAIKTRNPSLGEVAERRDKLTDLARCFEGIQTEIEEATPNLEEVITVFNHRIL
FEEAYFQIKDLYTEYLDQHVEEPEDRSENRQDNDLRDAIRALLESQQQMLLAQCQKPTPQSLALAAGSQVSNSVPQNVVK
LPQIDIPKFTGERKHWRSFKDLFECTIHNRTDLRDSVKMQYLFSYLDGEAKGKVDSFSINEDNYREAWDALVTFYDKKKY
TVFALVREFVDQQQVTSSNGLKKLVATSDDVVRQLKALGREYESRDPWLIHLLLEKLDRETRSLWAQRIINIENPTFAAF
LEFLQQRCDALETCLAFSKKPASDSTKKGRHVLHTTAVASCAKCSESHPTYHCEQFKAMDVDGRRELVLSQKLCFNCLKP
SHTTSKCPSKSTCHKPDCNQRHHTMLCYQQQLQGYEPEETDHDLCPQLPEEAEEVWSFSANAAQTKANKHGPSTAALLPT
VVVNLQGKDGKLHQVRCLVDSGSQASLITEACVKRIGMKRTKVSLEVSGVNGEIVGNTAGAVTLVMSSRFNGEAKLTTQA
YVLGRLTATLPNQRFSVADLPFLEGLELADPDFNSPSEMDVILGTDVFLSILRAGQVHNQQGIPVAQRSIFGWMVAGKIT
NPCRISTHIAVLNERTPTITTTHNNLDGSITKRPKKNGIDVTPYNVALLNLAVSSTDPQACIVLFATRLRLPGLLSVKVW
ARGEGTEYLYLRSDRRTRSVPVQTVQSPPCTHSWTATQARSSSQGNWSWSRITAHHHQPGNWPGS
>BEL-15_DTa#LTR/Pao 412-7578 via tfasty with BEL-2_DGri, 2 frameshifts and 1 stopcodon. [Drosophila takahashii]
MASSNIQPLLDEQSALGERIQSLIRNFKKDSDSRKTKPAYFTERLANIEGLWSNFAIRDAKIQEIVKGKPIDNDYFLNNY
FIKIKNLVIEYKEIFNTNLATLELETNSITSTEEDLEIESMFREQRALIDSLERIMNKVTLETSHNFHSIINQYWNDIKN
IHVQIHKKFKNPKELGYDDSRYLTAEDAIVSYQVAFGGGRNMATVPSSPTTAAVPLPKIKIPKFDGNYLQWQQFHDLFKK
MIHESALPIIQKMWYLKTNLNGEAERLIRHLSLTENNYATAWKTLQERYNNRRVLCNTLIQKLVDYAPMSHDAKGIKTMH
DNVKETLSALNNMEIKTDNWDPILLRILTKKLDRQTHLLYEQSIPDTRNLQSIQEFLEFLEQRFLTLGSHWISSDKRPKK
TGTCAAGTEAQIQTCFFCKKPNHSIFKCDDFLKKTPSERLNWTQKNKLCVKCLSANHTAKTCTKRDCFKCNKKHNTLLHL
EKVADNLDVITAASVSGKQSSYILLATARVIIQGNNGQMAEFRALLDSGSQINAISERAIQKLSLKTTNSMLKINGIGGK
AHTSNSRVNVEIKSKHGDFTSRLEAMVMPHIVADQPTYPISTEKWKIPKNITLADPSFGSPGKIDLLIGAEHYFEIMQSE
SINIQKGLPRLQNTKLGWIVAGKIADQRTTSAVCAVLTEEEKVDEQLVKFWELDNFQPDRKCYSPVEKQCESHFLQNIQQ
AQDSRFIVQLPFLEHTSALGESRDIATRRFLSLEKRLQRDQAIKQGYIDFMKEYEVLGHMKEVPLVNLPRTHYFIPHHCV
LKPESHTTKLRVVFDASAVTSSGKSLNDLLHKGPTVQSTLMSILLRFRIHKYVFTADIEKMYRQIWINPKDQHYQMIVWR
NDPSEELKHYRLKTVTYGTKSAPYLATKCLEHLASKQMPHYPVGSHALKNDFYVDDCITGANTIPEALQIRTELNKILLS
SGFKLRKWCANSNQLLQGLNKEDIIPEVQLEDTAYEDCSVKTLGIIWNPKIDKLCGKTQIATNTKITRRDVVSEIFKIFD
PLGLFSPVVIKAKIFMQGLTKEKFEYNEELPEKLQKQWIAFRESLQSLNEIKISRHVFEGKIPAMKEIHTFVDASENAYA
AAVYLRAVHKDKRVTVQLLCAKSHLAPVKAITLPRLELKAAVLGAQLTSTVKEQLSMQEIPTYFWADSEIVLSWINSSTT
IKDKFVATRITTIQETSLQKEWRHVPSEQNAADVASRGICGSKFASHSLWFFGPLFLYGPPSTWPAPFIASKIERLAKPA
ETSLGAVKDDEFISKINHGNSFSKLLRIVAYIMRIKRKPLVAGTTISLEELERARKIVLRIIQQKHFSADIKHLKKSREV
EKSSNISTLTPFIDQDDLIRVGGRLEAAELSFDAKHPILLPYNDPIVKLIFEKMHKENMHCGAQALVATSRQKYWAIKAK
TIARNVVLSCVKCTRAKPKLLEQIMGHLPPLRVTQARPFLNSGVDYCGPFKIHYKIRGKKPHTAYIAIFCCFATKAVHLE
LVGDLTTEAFLGALRRFISRRGKCQTLHCDNATNFVGARNKLQELEEAIFSKKARETIVESCINKGVNFKFIPPRAPHFG
GLWEAAVKSAKHLLLKNVTTANLTYEELETVIVEIEAILNSRPLVPMSSDPNDLTAITPGHFLIGEPLAAQADSEPSQQP
QSLGQRWQAVSKLKHAFWSQWSTDYLQQLQQRQKWRRSSANIKEGALVLIKEDNTPVLQWPMGRVVKIFHGKDDFVRVVE
VKTSKGFFKRDIQHIAPLFPEEEPVHKHPISEDTATEDNDAEENKAKRKKTSTMPTLAMTLIVMLLLLPLTVAQSINVTQ
FASRPGIFFEKIGKGQLATADWSIIVYYNLNPYWHDMNTFSMGVTKIGHLCTQLPQKEACTSMYHHLKHLEEDLQSENML
LARTRKPRAPLDIVGNIANSLFGVLDSTYAKEMANTITKVKGNEEHLLALLKNQTSLIDSTINVIKRDEISNSKRLKLIE
SYIADTKSTDSVFNTLSWYTSLSTQLAMLASNLQRVQTELINVLTDIRHNKISPMLISPRQLKEQMEKIRSHLKAGQLLP
VSSDNILMAYQMMKGEGAIVKNHVIIKVNIPLISSQVLDIYKLTPIPFRIxSGIQTIEARSPFLAINSHHDEFVEMSEAD
IKTCQERAKNDFICYNKQAMFSSETSCEMKLFHNKTDASCKLINTKRSFLWLGTYAENQWIFATKSCLKLSAVCVDGTSD
IELQGSGRLNARPGCTIRNSLMTITTRGVAETKLQTSYARFGDIDLQEIIPTKSKTTHPVEVEKLNVDDLLQRKIELFPS
TTFTLPHNLSTIEHHHIAIYIGLIFMMIISIVHLVKKWQVTRQHPQRRNTPASTATLSTQPFTININDC
>BEL-10_DWil_p2#LTR/Pao 7665-8515 via tfasty with MAX_p2, 1 frameshift. [Drosophila willistoni]
MAPRPRSVQASKEERRCSRGTESFRCRVCRGIHPLKRCRRFLRLNVEKRLRNKYCANCLAHQHSGGSCLSGDKCRICEED
HHTLLHFHEQPRRRTPSSVVRRVTPESSRRRVAPTPASDPKLTLTTLLQHRNPHLMPTAMVRLETGGKTFDVKALVDPCS
AVSSMATSLATAFKLTAVNIGAEKAVAAVIRSPISEGWRLEAILKVVDGLCCRTPSAPVDPQIAKKFEGIVLADDTFYRP
SSVSLVLGADVITEVMLEGSLPGVGGRPIAMRTVFGWTLSGACH
>BEL-8_DEl#LTR/Pao 704-7897 via tfasty with BEL-2_DGri, 3 frameshifts. [Drosophila elegans]
MEVENLIAIQSQIGEEIQILLRNIKKDSSKRKEKASYFEDRKRQIEEYWKKFDKGNNIILEMLNDTPMSHEYFEKQYYNQ
MKTIVYQAIEEFNTKILQSMETETSSEVVEQIQKLIRHQAAVLESMSRTMKHIAPENKFTYKSVIDNLWKQIESLHFEIH
KLCIEPEELGYSMERYISAEEAMLQFCQPSTEAVSVATNSSVATISSIQLPKVSIPKFDGSYLKWQQFHDIFNKMVHESA
IPKIQKMWYLKANLSGEAERLVRHLELTEVNYDTAWTMLKERFNNKRVLSTAIFEKLFDHPNVTNDSQSIKNLHDNINES
LQALKNIGIRTETWDPVLLFHMTRKLDRLTHTLYEQTILDTREIQSIKEFLAFLEQRFLALEAIGGKMHKEKHKTSASAT
ASSLACLFCQKGHSIYKCDRFKDISPAERLAWVQRKKLCVNCLKADHMSKQCMSKYTCIKCNKKHNTLLHLGNGNSSTEP
KTAAASAATKNSCEKKYTLLATARVIVQGVNNQEGDFRALLDSGSQINLISERLVKRLSLQLHPTNLRIEGVGGQPRISK
GRVSVLIKSKHSDFEARVEAFVLPHIVADQPTEQVKISDLKISNNIPLADPHFARPGKIDLLLGAEHHFSIIRPEQIKSY
PGHPILQNTEFGWIIAGKINMCSKMPQNCMVVSSAEEAKSSLEKFWKLDNMEPIRKYRTPEERHCEKHFLENLQHAQDGR
LIVRLPYSEDPSALGKSCDIATRRFLSLERRTSPDVKILYNEFMAEYEKLGHMKQVLPNQIPKEHYFIPHHCVLKPESTT
TKLRVVFDASCKTSTGKSLNDVLYPGPVVQSDLFSILLRFRIHKYVFTADIEKMYRQVWMNPKDQFNQMIVWRYNPSDEI
KYYRLKTVTYGTTSAPFLATKCLEHLANKHLEKWPLGSNALKNDFYVDDCLTGADTIIDAQRIQGELNKILLPCGFKLRK
WCSNSHQLLKDVSPEDIASNINLGTALEHTSVKTLGIIWSPKDDNLCGKAQEHNTQTITKRVVASELGQIFDPLGLFAPV
IIRAKIFLQNLSVLKLDWDTEISVSLKERWEAFRQDLLCLNKMTIPRHIFDGKIPHKQELHIFVDASEKAFGAVVYIRAI
YRNRQTTVRLLCAKSKVAPLEKQTLPRLELCAAVLGAELAEKVKKDLNLQSESIKCHYWTDSTIVLCWINAKASNFHTFV
ANRLSKIQDTTCPNQWRHVSSNLNAADVLSRGIPASQLSGHTLWLYGPLFLHGSEEKWPALFKAPKDNTISLERKIKIVT
LATCTLGEEIYRIKHGNSFNRLQRIIAYMLRFCYRKNRKQTELLEFDELEQARRIIIRCIQQADFTNEFNHLRRHPERPL
PNSSKVASLHLHLDENSIIRVGTRVENAPISRDAMNPYLLPYNDEIVKMLIHKLHEENMHCGQNTLKGIVRQQYHIIKIT
PMVRNVIMKCVPCTRFRPKLLSQIMGKLPEHRVSQNRPFLNTGVDYCGPFWIHHKVRGKRPDKAYIAVFVCFSTKAVHLE
LVGDLTTAAFLGALQRFISRRGKCQTLYCDNATNFVGASNQLKELKETIHSQQAKNSIVQLCNTKGVHFKFIPPRSPHFG
GLWEAAVKSAKTLLLKNVSTANLTFEQLSTVITNVEAVLNSRPLTPRSDDPNDLTVLTPGHLLIGEALVAQPDPEPLRIK
SLPEQWELVQRLKHTFWTQWSREYLTGLQQHSKWKQAHKNVREGMMVIVKEDNVPMLQWPIGRIVKIYPGQDGYVRVADV
KTATGVFKRAIHKLAPLFRQEDPGEKRKEINGEDAEEEEDQEPKRRKSPSLPMLSMPLLILLLLLPLAAAGPINITRFDL
RPGIYYEKIGSTRLATADWTIIAYYDLKPYLEDVKTFYMGTIKVGQMCSHIQPVQACAAVYHHFQHVYEEIKTENDLLHM
SRTRRSPLDIVGNIANSLFGVLDTEYAKKMSSTIQKVKSNEDYILELVKNQTSIIDSTINIMKRDEAAIDKRIKIMTQQM
EDIANARLDSLKAFQWYIALTNQLSILAASLQRVQTEISHVLTNVHHNEISPLLVSPKQLRQHLDKLKIHMPQGKMLPLV
NDDVLQLYKLMKAEAKVVKDYVIFKLTLPLVSTQLFEIYNLVPIPVIINNKMISLDIEYPIMAVNQHRDQFITMSSSEFE
LCNILNGEEYICSDKQSMFSIDNHCEFQLFNNKSSSLCQTKGSTRSFSWQRLRTKNQWIFSIKSPMELSAVCDDQLSTIT
IDNIGLLSLDPKCTLRNPVLSVIGHQVTSTGTLKLSYARFGSLNESLTPLAKVSQANNSLKLSYNELNELSKELIPRIKI
KMPNEIVELQHHHISAYIALILSLGLIIFYVWKRFQKKSPQPTSSSSKDIDLPAKPMLINTPRRHHQTPVSDAFEINIG
>BEL-8_DAn_p2#LTR/Pao 8043-9063 via tfasty with BEL-22_DTa_p2, 1 frameshift. [Drosophila ananassae]
MFVCPCSRLVICFWIPLILLLFPYHTEKMAPRPKAQKPNYPPQGTASYRCRVCRGVHALRKCQQFLKLTAEKRLRAVLIN
KYCSNCLAHEHSGRSCRSAGKCRLCQRDHHTLLHLHNEGGRRRRSLQRSRSSRRRSPSRSPHRRPLGRSDSDLGVEPLSS
ARPSSPAALQEDQRGAYTTTLSTLLQHKATSVLPTAEVVINTGVKKFELKALIDPCCPTSRISASLARSLGLSVTSVGTD
GVCGHRLQSIRGPLDEEVIFHVDSQLQQRSPAREIDPTAYEAFANLALADERWFRPSTIFLVLGAEVSSIIRSGFIAGQR
GSPVAQNSAFGWILSGPCGH
>BEL-8_DMo#LTR/Pao 239-5887  [Drosophila mojavensis]
MLSDKAIEVLKKQSNLYDTILKAIAEKDALAVVNKLAEEFTANHSTLIKLGIPSNHPYFTQNINDGLMEKIRIYKENLMK
VEATDPDIDADRPSTSMNWQMHSTHQETVFSPRKASATDVMVELVGKRALVLKRHIEEVHANLELSNQEETLDSKETLEF
LWNKVQSTLTDLEVKYDIPSHEIDGIDALELKVHTLSKKLXRKLSVFHSMKEDVPEMPKSDLPQFNGSPKXWPTFFDXFS
DMVHKRKDISDTRKLNYLKSCLKGDAQMVVSHLLSGSAASYNSAWELICKRYENKRKIFANAVNQLVDMELLENDDESRI
RRFLDTANENIHIVKEVAQIGNDADVLIAQILLRRFSTEVPQLYEQHVKRAREIQSLQNVLEFVDQLYNSIDAVQKRAAQ
TITEAKKTSYKRCRFCKLDSHDITRCSRFKAEPVKKRKEFVTKNALCFKCLGAHCIKDCKRDLACKYCTKPHNNLLHEEA
NKNETFSSNCLKESNGQDTLLATALIRIKNKSGKYEQLRALIDGGSQRTLISEEAAQQLKLRRIKRDVEVQGISQNTEIL
KNSVCLTIKPRMSSKFVTSTQALVMPKLQRALPSKKIDMDVNKDWMGCELADPHFNEPSRIDVVIGVDLLPLIMLGNVKK
VNETLGQKTELGWIVSGNIARSSNNKVISATTTIRLDDLERFWELESNSSDPEENNDCEKKFQETTTRDEEGRLVVSIPF
KKDHELGNSRKQAMARLMQMEKKFKKHPQLFTEYKDFMEQYLKLGHMEPVDTIGKGKYYMPHQAVIRPNSLTTKLRVVFG
ASAKTTNGLSLNDVMLVGPKIQKDIFDILIKWRQWKYVMTADIEKMYRQIKVAKADQEYQYILWRDDPKMPIKEYKLTTV
TYGTSAAPFLAVRCLQELANQHCQGNNQLMRTIKEDFYMDDLITGGDSIEDCINTQTALLSIMEKAGMHLRKWVSNDDRI
IAGIDDGDSTEKIIINKDESVKTLGLQWDPKKDVFTFVVDCPKLERTTKRLILSQLARIFDPLGWLTPVTLQGKCFIQEL
WKLPLTWDEQLEPSLVNYWQEYARALPELARINIPRWSEKSSTDSTELHGFCDASEKAYAAVVYTKVGDKITLLAAKSKV
NPIKNKKTIPKLELCAAHILCKLLTKIQAIVGNNIKTIAWSDSQITLAWINNKRSKDRFVKTRVDDINKELPHVEWKYVK
SADNPADVASRGIAPEHLAACDIWWKGPEWLTKQPHQWPQFEEPETVIVATITTKENYLSPLLTRFSSINKLTSVMAYIL
RFIAKSRGKKHQPTHLTVEELKQAKTLVVKLQQQLDFGHEINLLKAGKPLEAKSKLQALNPFLDANGVLRVGGRLQSALV
PYNVKHPIIVGKSHLSWLIINNAHKETLHGGLKLMRNLIQREFWIVGLRNTLKKYLRECVTCIRYKQEMASQLMGNLPVY
RVTGDYPFQNTGIDYAGPFQIRCSKGRGQKSYKGYICLFVCMATKALHLEAVSDLSSDKFLEALHRFFARRGKSENLYSD
NGTNFVGAARILDKELVAAIKGNSSIAPVLEREGIKWHFIPPASPHMGGIWEAGIKSVKHHLKRVIGDNSFTFEEFSTLL
CQIEAVLNSRPLVALNNDTEGDDILTPGHFIVGRPLIGAPEHFDEHRKIGSLDRWRHMQRIRAEFWRKWKEEYLASLQQR
TKWRQANANLTEGQLVLLKQENTHPARWPMGKITKTTKGQDDKVRVVTIKTNMGEVKRSVNKICLLPTNEKDKQDDSTKD
RRKTRSAKLPAGKATILSLLTVLRVASATIIPATNITTKLKVQDMDPQTAMLMDKLGKVEVVSSSWQMLFYYDMQAYFEV
LKQADELMSKTNIICEKLGDFNEYCTTVSSTIMLKIKNIRENK
>BEL-10_CQ#LTR/Pao 47-4391 via tfasty with BEL4_AG, 1 frameshift. Fragment: 3-prime 1.5 kb of internal sequence probably missing. [Culex quinquefasciatus]
MESITAKRNSLFAKVKRELETAERVKTQNPSLSEVRERLVRLEAQGNSFFDVQDQFEDGTSATTLENLVSVFDYRKEFED
RYYAAKAIYAALDEGSGASDRSFAEPANNLKTAVAALLETQRALLSNQAAHAAQLNQIQQGNQPPVGQPAQAQPDPFINV
RLPPINIPKYAGVRKEWLSFKDLFVSTIHSKESLRPSQKLQYLKSLLEGDAASQISSFGISDDNYPLAWDKLLRKYDQKK
YTVFALVKEFLDQPVVSDATAGNLQKLVTTSDEVVRQLDVLGEQYQSRDPWLIQLLLEKIDEETQALWAQKLVTLENPSL
TDFLKFLEDRCDAIETCSSFTRKCTLSGAGAKKEIRKQPAKPAEKKVQSYVATPQPCPKCSKEHLLFLCEAFKASSVADR
RELVQKSRLCFNCLRTSHTAKTCSSKHTCKTDGCNQRHHTLLCQHGGRQAATAGLPGQQIAAMPVQQPAMEAQPTVPSFK
AEVTSDPAVKITVLPTALVKLRGKNGVFHTARAMIDSCSGASLISEACMTRLGISRSNARFPVTGVAGTQAGITRGMALL
EIAPRFSDEVVMKTQAYVLEVLAPPTPCQSFKPKQLELLRGLQLADPEYYKAGPVDVILGAELFLPILQAGQVTDEDGLP
VAQKSSLGWLVAGKFGGETVLQTNLVSFTVQLDVNIDQTLRKFWETEEVPAVKVLTADEKRAVDIFNTTTRRNDEGRFVV
RLPFDDSKPALGDSLGAALRRLHAMERKFLSNPPFKQAYRDFMSEYQQLGHMELIPQSEVDKHPSECFYLPHHAVQKEDS
STTKLRVVFDGSCRTSSGVSLNDRLLIGPNNNEDLYDVYCRFRTYPVVFVSDIEKMYRQVRVDKQDTDFQRIVWRDDPDQ
PVQHYRLTTVTYGTSSAAYLATESLRQAARDNAEKHPVAADRILKGFYVDDLMSGADTVEEAQELAGQITTILGEAGFVL
RKWSSNAPELLENIADSRQGPVPVEFTNVTASVKALGIHWSPTSDWFEFKVNLDINSPNTKRQLLSDASRLFDPFGWLAP
VIVKIKIIFQLLWLYDLLWDDPLPPLPEADWNTIKQTLHLLERIRVPRRIPAFNGKLQLLGFSDASESAYSAVVYGRSAD
RNGKIHIVLICAKTKVAPIQQICVPKLELNGSWLLAALMKRVSLALCHLELQHFAFTDSAIVLEWLSAHPRKWKTFVANR
TSAILDFLPRSMWHHVSSKDNPADCASRGISPLELLNHPLWWDSPYWAHSEQSFLEHCAAPAPKAPPLEERQIRTFCLEI
GSPRSNFTLERYLLDRFSSLRRCTRTLATIRRFLFNLARPKVERLTGPLTPAELKVAGLQLVRLAQHEAFAKEIACLRKS
TEVSNKSKLRPLFPFIDLDETLRVGGRLQNADIPYDMRHPPILPQQHTWITMASCGPSRCAEEQRSTRDRSKSWFYYRLV
EATASRWG
>BEL-9_DEl#LTR/Pao 1031-6214  [Drosophila elegans]
MGKEEEPNLAAGEAKLTHLRSQRSTIERHIENIHGKVIADGANEEIPVLECRLQILESHYRQLCQIQTQIESLRSTDNNR
AEIDERFIAARVSIISLIQSRQRQGPADQSVFETTLAGSHHTRLPKQKLPSFDGKYSQFKRFITSFNNLVHNDSSLAQMD
KFNYLLGCLSGPALEVVQAFQISEDNYPKALERLKSRYDNDVLIFLDCISSLFALPTLAKPDPSQLQHLVDKASAIRGSL
LSLGSAEDIMNNVMIHVILSKVDSQTKAKYNEQQTFEQLPSWDECCKALNRRCQVLESQNGDVRKSDQRDQKLKSKTHIS
QNSFVTTNVDCFYCNSSAHFISSCKAFADLAIQQRQELAKKAGVCFNCLRNSHQIKDCRSKSRCKICRSSHHTLLHQLQP
ERISASNINHIERQVTNQANLQNLARHDPRPHNNVTLIARTVKRGIIPTAVVLIRDKFGQFHPVRALLDSCSEVNFITEE
TSKRLQLDRFHVQQEVSGIAEVRQRIHYTVVATIKSRTCPFEWSSTFSTIKTICAKQPEESVYVPNWKLPEGLILADPQF
HVSSKIDLLINTEGFFEAIREGKISLGENLPSLVNTAFGWIVGGNIAVGKPTQNQLCNVIQEKASLYKLVNQFWEIEECK
MGKGILTEQEKQCEEYFLQTVSIQEEGRIQVRLPFKDTPDKLGNSFDQALKRFMLLERRLNKNPQLKQSYVNFMEEYLAL
GHMSQTESVDRAKPHFYIPHHCVLRPESLSTKLRVVFDASAKTTSGKSLNDILLVGPTIQADLIITLLKFRLNKFALTGD
IVKMYRQFSVHEEDRNFQLILWRGDSTNEIKTYKLNTVTYGMSAAPFLAIRALRYSAEINGKDCPLGASVLHSDLYVDDV
LTGADTLTELMEIKEQLTKILGRARLQLAKFSSNSKDIVERSQDEIFIELNDQEFTKTLGVAWKPNADVFVFHPKVVLDA
PVTRRSVLSAIARIFDILGLISPIIIRAKIFLQDLTLKRLPWDTCINEKQLAMWTEITDDLRVLENLTVPRYVLTAKSET
CEIHGFADASERAYGCCLYIRVQNETKIGINLLMAKSKVAPIRAQSLPKLELCAALLLSRTWRKIAGLLKPYLSSVYFWT
DSTIVLRWMTMHSSQLQCFVANRISELQENNDDIIWKHVPSAKNPADIISRGCRAEDLWTNMWYTGPAFLREPKEKWPVL
SGALPEPIEVRNRVVLQCASAEESILESIIDNSSSYIKIVRILAYVYRAINNVPAAKHLKGKDVTHIPAREMEQTFWKII
SHIQRNVYSSEILALRKGKPLQPSLQTLTPFLQETTSGIVIMRVGGRLINSELPFDSKFPAILPKHHRFVYLYIEYLHRS
NHHAGPKALLAILRHRLWIINARAVIRKLVRNCIHCFHYKPQLMKQIMGDLPADRLRQNRPFLISGVDFCGPFFTSYRIR
GKPPYKTYAAIFVCFTSKAIHVELVTELSSVAFLLSVRRFVARRGIPLKLYCDNGTNFVGASSRLKEFKDQMLNDVSLNF
LHSYSSCKGFEFCFIPPRSPHFGGIWEAAVKSTKTLVLKTVSNANLTLEELQTVFIEVEAILNSRPIAPASDDPNDDEAV
TPAHLIIGSSLLAAPDERLFNAMDPKGMRYLDRWQRVAYLKQQFWHLWHRDYIRSLQQRTKWPIRQPNLEVGQLVIVQED
NMPPQQWLLARVTNVITGRDGAVRVADLKTSKGTMRRPIHKLALLPAA
>BEL-22_DTa_p2#LTR/Pao 7113-8060  [Drosophila takahashii]
MVPRPRSAQALESRRTRGLNSYRCRVCRGIHPLRKCQRFLKLSAEKRLRAVLVNKYCSNCLAHEHSDVSCRSGDKCKTCS
GKHHTLLHMHERPLPSATNQRSRRQNPPTRQALAPARRSASAASQQRSRRQNPPTRRALASPPRSASSTPAPSLASILQR
HSVNVLPTAMVTLETGLKKFDTAALIDPCTPTSCIDASLATAFRLPTTTVGDERICTATIRSKRDDGFKLEVVLKVEPNV
RIRTPIRELADTVVSKYGDLPLADERFYLPATISVVLGADVYGKVIRPGFHLVDEGLPVAQRTTFGWILSGACNLS
>BEL-94_CQ#LTR/Pao 14-6274  [Culex quinquefasciatus]
MTTIRPDENCPYCGLPDEADREMVQCDRCDVWYHFRCAGVTRAVKHQSWFCGPCQAERHYGPNPELNPAGSEEDNFSVPP
SELSSLRSHTSSSIRQGLQLLDEQFQVRQKRLAEEKAMQERRLALEEEYAKQQNDLREEHLKVRQELLSSLRDMSVSGSR
GSARSRASAVRSERVRQWMEKQQNPVENPRKVVPRGAFPNIKPAQDVSPLRNPNMPQQCERASKIDGTVRVGKPQEFPSN
EASGGTGYEGVSDGLGRRNVPANPEQNVGRPCPAPRQQHNMPSTFAQDTRRPCPAPRNFVDGLGQRKMPSTSARDALGTR
RVEDYVPFAGQPREGVEGEAGQYWPLISRGNDGRTDRNSFGDPPAPHADGTLALLSGAPNQQLQPQPPQPFDVGDGRYRF
KSPQEHLQYNQSEQRDGNDRGPHDRGQFGGITPEQLASRQVLPRKLPIFSGSYEEWPLFISCYNTTTEACGYTDNENLVR
LLDCLRDPALGHVRGQLLLPQSVPRVIETLRRIYGRPEQLLQSLLMKARRCEPPKSDRLETFITFSLVIEQLCDHLEATN
LQDHLVNPMLLQELVDKTPAGTKMEWVRFKRRHGQVTLRTFADFMAGIAEDACEVAPMIDNKQLAGDKRVEKRTKEKGFV
HAHDATTVPEQTTKERVDIKPCRVCQSTEHKIRNCDVFKNLTQADKTTLVDKWKICRICLNEHGDSRCRFKIQCNVEQCR
ERHHPLMHGEAATTHAAEATEAAHNAHRADIGQMQFRLVAVTLHHGTRSVRTTAFLDEGSSMSLVERSLVDVLGVKGGEL
EPLRLIWTADISRTEKNSKKISVQISTAGCDQKHQLALRTVTELKLPTPSFKISSLTKQFKHLGDLEVDDNLGKPRLLLG
LDNLHLFAPQESRIGQPNEPIAVKSKLGWSVYGPSSDNKCGGGVVGSHFTENISNQELHDLIKEYFAVEEAGVTAGVLES
DDDRRARVILENTTVKVGGRYETGLLWRSDDYDFPNSYPMAVRRLEQLEKKLSKNPELAENVRRQITEYQLKEYAHKATP
KELSDSDPRKVWYIPLSVVVNPRKAKVRLVWDAAASVNGISLNSQLLKGPDLLVSLIEVLCRFRERPVAFGGDLQEMYHQ
VRIRSEDKQAQRFLFRDNPTLKPDVYVMDVATFGATSSPASAQFVKNKNAAEFAHVHPEAAAAIIQRHYVDDYFDSADTE
EEAIERAQAVKHIHAQGGFHIRNWVSNSTRFLEALGEPNQKQTVQFTSDKHTNTERILGITWNSVLDVFVFSIPTNEALQ
PFLTGKARPTKSIVLKFLMSFFDPLGLIAHYLVHGKILMQDIWRSGCDWKATINDDCYAGWTQWIKWLPHLEQLQIPRSY
FGDIRSSRIESVELHVFSDASEKAYGSGAYLRIVCDGAIRCTLALAKTKVAPLKLLSIPRLEVSGAVLGARLANTAETCH
SLPISRRVFWVDSATVIAWIHSDHRKYKPFVAHRISEILSLTSVDEWHFVSTKSNVADDLTKWRKRFTMSSEDRSIRGPD
FIYTDSKSWSVPATPIENVEEELRAAFLFHEIHLPEPVIDAERFSSWKTLVRSLAVIFRFRSNCQRKARGLPIEAVPATS
AVTGHVKGAVSSTEVPLRQEEYAQAEHCFWRLVQADMFPDEVKVLMKNRELPREEWHQVEKTSVIYQLSPFLDHAGVLRM
EGRAEAAEELPFDLRFPVILPKKHPITIKLVEHYHRKLRHGNNETVVNEMRQRFFIGNLRAVVRMVANDCQLCKIRKSRP
AVPRMAPLPIQRLQPYLRPFSFVGVDYCGPITVTVGRRSEKRWIAVFTCFNTRAVHLEVAHSLNKQSCLMALRRFMCKYG
VPREIFSDNGTNFHGANNEGVLIRAINNNCADVVTDARLKWNFNPPSAPHMGGVWERMVRSVKECLKVLDDGRNLTDEVL
LTVLAEAAEIINSRPLTYQPQDASSPEALTPNHFLRVGPANEELVLEAANVGQALTDSYQRSQMLAQKMWKRWISEYVPS
LNRRPKWHEEREPVKAGDLVFIADEEQRKTWIRGIVDEVIKAKDGRVRQAVVRAQGKLYKRPVAKLAVIEVGANGRSEPH
SEKPRD
>BEL-79_CQ#LTR/Pao 567-5843  [Culex quinquefasciatus]
MAAEKKIAVTSYTRMIDSIKERGKKLLIFVRDFDSEKLDRSLLEDKQESVEEMRSLFHETEVKLYGVIKEDEVSAFQQTN
EEVEDLLDEIRHLVRQRLREIDPPKPVSEQVKVSSSHQAHPKLPDIPLPHFSGNPEDWHLFKDTFTALIKRREGLADSEK
LFYLRAAIQDGKARFIQSAEDTFVSLWKALRQEYENKRVLVEKHIAQLFHLEPIASESGSDLRTLINEVSQSLRALANMN
LKVESLSEQFMIHLVCSRLDPGTRKDFELQLTNNALPSWEKLFEYLQSRCRCLESIENETKDKSVPRGKTTPQERSAPRQ
SKAFPVQTAPPRSRSSNINVKCFVCKGAHYLNKCGQFLALSASDRSAKIKELGLCLNCFSNKHYLRECRSSSCRTCGGRH
HTLLHLPHTAPTSNVPNQGQAPTPSQSMSSSNSVVGCDTSSIPSAKQFVLYTAVEVVEDAYGNSIKCRILLDCGSMHNII
SSRIVNMLKLPKVKANVCVAGVSGAPQLIKSKVAARIRSTTNPDCLYELEFLMMKKITTDIPIETFDVNPERFPAGVHLA
DPLFNRSRRIDILLGIQTFNDLFTGASFPLADDRTLWCKETTFGWVVGGAVTERRADETSTSTCGVVTNEMLSEQIKQFW
DSEAVPEIRALTADERAAEQSYSDTCRRLRDGRYEVGLPVKESIRELGDSRAMALSRFVQMERRMHRDENLREQYVAFMK
DYEDQEHMIEADEVPGGYFMPHHAVFNPASTTTKTRVVFDASAGTTSGSSLNDHLYVGPALQRKLYDIVIRFRFPQFVFT
ADMTQMFRQIRIRSEDRKYQQIFWRRHPDELVKVYQLATVTYGTACAPFLATRTLAQVCKDEIERFPLAAKAGTDDVYMD
DLLSGADTLEEALVLQKEFVAMMKSAGFDLHKWASNHPDLLKSVPNADNEQDAFFKDQKTTRTLGLTWQPSSDKFLTKLH
EIRFNTGPPTKRSQYSDIAKLYDPIGLLGPVIFKAKVMMQKLWEVEVEWDDVLPDTEEWDTFRNQIAEMGEIEIPRNVIP
HPNPLQIELHGFSDASMLGYGASVYARCVYSREYSTVRLLTSKSRIAPSKNAKQTIPRLELDGGLVLARLISNLTHILSI
PFTRIVCWMDSTVALSWIRTDPGRLDTYVSNRVIQIQELTKNFEWKYVSSHENPADVLSRGLLPTEIRECPIWWQDLTYL
DQNEPLWPSQPPTIPVEQLPETRNPTVSLPITDPPAMFNLFEIESSFRRMQRTMATMLRFIDCIRKDDQRERRSGHLTIA
ELNRATAALTSIAQREAFPDDFQQLESGKVIHSRSKLITLCVFSDRSKFNVLRVGGRLRHSNLTVGQKHPMVLPSKHPFT
DAVVRSYHEEFLHAPQQLLLSALRRRFWVQHGCSTVRKIIRRCVTCFKAKPVAMQQMMGDLPKSRLEGVCPFLNAGVDFA
GPMYIRQHNKRSTVTYKAYVAVFLCFATRAIHLELVGDLTADAFIAALQRFVSRRGKPVKLFSDNGLNFVGSKNKLRDLY
KLFRSQQLKGKLDDFCTKTSIDWRMIPPNAPHFGGLWEAGVRSAKYHLKRITGTANMNFEEFTTVLARIEAVLNSRPISP
MSEDPTDATPLTPGHFLVGRPLTDIAEPDLSDRKETTLSRWQRQTHMVQHFWARWHQDYLTTLQNRNKWHKRYEIKPGQL
VIIREDNVPTMQWKLGRIENVIPGPDGLVRVADVRAGKKVIRRAIAKLCLLPIEDNNAEQPEAEAADDGSNDQEEQED
>BEL-594_AA#LTR/Pao 47-6395 via tfasty with BEL-603_AA, 4 frameshifts. [Aedes aegypti]
MPRSQHIPHEASADAQCIACRKPNSAEAKMVQCDGCHRWYHFSCAGVGDSIEAEDRSYQCALCRPRSSRAPLSEKSTAST
SASAIEARLQLEMQHLVEEKELQAKLMAEKAKQDREMQEKALQLETERRAKMMDDLMKLEKEFLDRKFQLLHAQLDEGAK
TSSRASVHSGVSAAGSADKVRSWIDNHQVILRANSGKDISTGLTSQAGGHVVATRSTLVDGAVAPVAAVSSHEIRSSQAV
TQPGVFSNSFDDVISPIATVYQGGFTNTANPVPPVLQSTPRTESITLSSIPAVHPTVSWQTDIHPSSCAVSQPAPVIGST
VGGSSMLPRVPAPVSSFGRYDQSQYVRRTWMDPHVGQHNPYVLPSSTVVSTTSAEVIAGKIGEPITQNCVQPSHVFPSTL
GQLGYSQISRNEANMPPDSGNYFLSRNQPVDLNPIVSQNAPFPVYHMQSEPMSSGGESRPPLRPPVVSVSSYQTPIPAVQ
NPQLQYGGFQPSYGPNAQQLAARHVVPKDLPCFSGDPTEWPMFWSSYQTSTQICGYNDSENLMRLQRCLKGDARKAVSSF
LLHPANVPEIINTLRILYGRPEAVISSLLAEVRATPTPRPEKLGTIISFGLAVRNFCTHLVSTGQQVHLANPILIEELVE
KLPANIKLDWAIHKQRVQNVDLRTFADYMNVIVTAASSVTPTIVKHEKPKGKAEIHTVNIQNEKPEPSSQTRTERPCMVC
QKPGHKPKDCSSFKSKTLEDKWKVAQEVSLCRRCLYPHGKWPCKASNCGVNGCQQRHHRLLHPGDPRETRPEGSSQVSGV
ISVHRQQQEILFRIIPVILHANGRSVQTFAFLDGGSDTTLLERSLAEQLGVQGPTSPLCMKWTNGVERVEEESQKIQLDI
SGLSTDRKFTIRRVQTIEGLELPRQSVNFEELRSKYPHLRGLPVQSYNDAVPGILIGLDNTRLKTTLKLREGREHEPVVA
KTRLGWVLYGRSGNDVGSSSQRVLHICTKSRDDELHGLVKSFFSMESVGISVTQAKESADDKRAQEILQATTNRTDTGRF
ETGLLWRFDNVEFPNSRPMAERRLKCLERRLLKSPALYANVRQQIASYVSKGYAHKATPRELETMDAKRTWFLPLGVVVN
PKKPEKVRVVRDAAASVEGVSLNSVLLKGPDLPTSLQAVLCRCRQKAIAISGDIMEMFHQVLIRVQDRQAQWFMWRESPS
DPIQVYVMDVATFGSTCSSSSTQYVKNLNAEEYAAEFPRASEAIKENHYVDDYLDSVDTVEEAVSSTDVKEVHEKAGFLI
RHWMSNSPEVLTRIGEQNTKSVKSFTMDKGSNLERVLGMVWRPQEDVFVFSMAFREDLQRLLDDSVVPTKRQLLSLVMSV
FDPLGMVAPFVVHGKTIVQEVWRSGISWDEPLPEDIVHRWEQYAKSARNDAYVKIPRCYFPGYNPEAYDSLELHVFVDAS
SSAYAAVAYFRIVDCGKVRCSLVSARTKVAPIKLLSVPRLELQAAVIGARLAKSVISKHSLKIKRKTLWSDSSTVLNWLR
SDPRKFKQFVAFRITEILEETEVTEWRKVPTKMNVADEATKWGHGPCFDEQSRWYKGPAFLYEPEFDWPEEANRTITAEE
LRVVHVHQQLPTEPIIEFERFSKWERLTRSVAFVLRFGCKRMRRNGSKDGKATLGSAEWKRAESAVFKLIQANEYPEECS
ILHRNLTLQPDERERLQKSSRVFKLSPFLDLAGVMRMGSRIANAECVSDESKFPVILPKDHYVTQLVIDWYHRKYRHANN
ETVVNEIRQKFHVSDLRTAVKKVANGCNWCRVYKCKPQVPPMAPLPSARLTPYVRAFTFTGLDYFGPINVRFGRGSVKRW
VALFTCLGTRAVHLEIAYSLSSESCKMAIRRFIARRGAPQEIYSDQGTNFQGASAELRQQIEAVNRGLAETFTNAETQWK
HDPPYAPHMGGVWERLVRSVKSGLAYMELPRIPEEETFITALAEVESTVNSRPLTYLPLESEESTALTPNHFLLLSSSGV
VQPSVRPTEEGAALRSNWKLAQVMLDRFWMRWIREYLPVIARQPKWFGEVKAINVGDLVIVVNEGVRNSWIRGRIIRVYP
GRDGRVRSADVQTSFGIMRRPATKLAVLDVAREAGTA
>BEL-597_AA#LTR/Pao 1541-6951 via tfasty with BEL-618_AA, 3 frameshifts and 1 stopcodon. [Aedes aegypti]
ALRRHVQFLDSYNPEARGRQSRLDKLEATWEDLMSCGANLxARRRRQLEQETNNAYAVFERQYYEIGLLYWQNWPCSTVP
NLDNSIRNTSALGMHTGVRLPQISLPEFDGDYKGWLSFKSTFVSLIHDSHELSDVQKFHYLKSALKGEAAKLIESLTITT
NNYVIAWETITKRYSNEYLLKKRHLQALMEFPKIEKESAVRIHGLVDEFDQRLKILKQLGEKTEHWGAMIVHWMCSKLDT
HTLQLWEDHAASLRDPTFASLVDFLEKRTRVLDAVQSNCRRARAPAGGPPGPRPRGRRPPAGAGPAAAPRARARPPKAPR
PPPAGGARGGPARGRKSARAARVAPKVTVKRERFAVHTSVESGRNDPVCQCCGDQHYLVRCSKFQNFGLKEKLDFVNSKR
LCSNCFKSGHWVRDCNSKFNCRTCGKKHNSLIHPGFQANGGGSSSGKDNDFNSSANGAKRQDAARSHVAAEMVEENQEEA
IESSSAGSYSIGTKQGGFSSSVFLSTVVVSIRDQHGGKQLARALLDSGSQVNVMSERLCQALKLKRRTICVPITGVGQSE
STAKHAVSATVSSRITEFSVGLDFLVLQRVTAELPSTTVSVSHWKIPDKLQLADPQFNVSGRIDLLLGAEHFFRFLYERE
MKRVVLGPELPVLVDSVFGWIVAGRDASLQQEKSVRCCTATAVGNLEELLERFWRVESCEEQPAWSKEEQDCEEDFKHTH
SRSEDGRYIVQLPKHVGFERMMGDSKVLALDRYRKLENRLERNQSMKEQYHAFMKEYLEMGHMRRITEGELDADSNKADQ
PKAFYLPHHAVLKESSTTTKVRVVFDASAQMDSGYSLNDILLKGPVIQDDLLNLLVRFRKHEVALVGDVEKMYRQVLQDV
NDPLRLRIFFRFSKEEPINVYELLTVTYGLKPSSFLATRALKQLAIDEGSMDSPAKSALEEDFYVDDYIGGAASVEDAVS
LREELTSLMAKGGFPIRKWCSNRPEVLAGIPVDQLGTNLSITFDLQPDEKIKTLGITWEPKADQLRFLFSVDDNGGEWTR
RRILSAIAKLFDPLGLIAPVVVTAKIIMQELALLQTGWDSPVPLQLEQKWMHFHGRLSKLAEYSIPRFAFITDYVDVQLH
CFADASEFAYGACLYVRSVDPLGSVRIELLSSKSRVAPLKRLTIPRLELCAAREAARLYRTVTMALAMDSVKSFFWSDST
VVLHWLKAPPNTWKTFIANRVSTIQTITYGHLWQHVAGKENPADLVSRGMPVEDFLKNDLWKSGPVWLKEAPASWLMQYS
ESLPPEVDLEPRIVVQANTASLEPNFIFSLRSSLLPLVRVVARCLRFMNNCRRPTQRNTSLFLSTQEIAAAKTLLVRLVQ
EESFPEEIKSLKKRFQVPPKSSLKLLRPFIDKDGIIRVGGRLRHSLEDYTTRHPAVLPQSHIFTRLIIESYHQQIFHGGH
RATLAVIRQEFWPIHGKRAVTSVLRKCQRCFRFDPKPIQQPMGQLPSARVRPARPFLITGVDYCGPFYLKPPHRRAAPHK
VYIAVFICFTTKAIHLELVMDLSSAGFISALRRFIGHHGCPKEMHSDNATNFQGAKHELHDLYKTLHSKSGQTAIGTELS
QQEISWHFIPPRAPNFGGLWEAAVRSSKTALKKEIGSHQLTHENFCTLLVQIAAALNSRPLSPLSDDPSDIDALTPAHFL
IGTSMKALPDPDLTAIPSNRLTHYQQRQQMFQRYWQRWTQEYLTGLQQASKHVQPTPIRIGNIVVVREDNIPPLEWPLAR
IIEVHHGADGVIRVVTIQTSKGTYKRPVNRICPLPIEDKTDVED
>BEL-596_AA#LTR/Pao 30-6813 via tfasty with BEL-598_AA, 1 frameshift. [Aedes aegypti]
MSRRSNVRQTRSQAKALQDQQANLHDDIERAVLSSIDNRNMAPSTERAEACDCGGCERPNNAEPMVLCRDCQCYYHYSCA
SVTSETVRTKPFVCSSCVRLTRLPPARSTSGRLSTSSSRQAQIARELQRLEEERQLEEEFHREQIEQERLLQERSRREKL
ERQRQFIARKYELLSQGDLEEDDASNNASDNNRVENWIREQQVATSAVPSDAVIHGVKTPEQAPTGDRHTPSREIFPNVQ
STPLTPKETTGVEPNRMPCLAEQLALAVDIDTTGSITIGDTADDEDERGAIGTEVRSSQRFTSISPVDVRIYSQFLKEPN
IAKPITGTVPKILKNTTLFEKWRSETENLRKCKELESERKKENEIRRKRELQLANQLKQLEIQNRDDLQVQRAREADLKA
QLQQLERDQALIEEQKHQELTALQDELQRLRAVEQQFLKHSQQQHTGGYIGVLKSDPIELLQGNHQQPTSDEQPERTVYE
QPAQMIHEQPTSQHAANVSNYPAPHCTIMPPMSFINVIPNNLQNASINTSPSYPRYSFNENYSPSPIHTPVGGRSHYNVP
PIVPPHVVSGVQSQRPIPNPFVMNTAVPNIGFQSAELGPSPQQLATRQVVSKDLPVFSGDPVDWPLFCSSYQHSTQACGY
SNSENLLRLQRSLKGRAREAVSSFLLHPSTVPQVLSTLQILFGRPEHIIHNMISKIREIPAPRADKLETLVGFGLAVQNL
CGHLKAIGLEQHLSNPMLLQELVDKLPANVKLSWALHQQLLPAVNLTEFGEYMGNIVSATSSVTCFNALPPKSSKEPRSK
EKVYVNAHTTSNEGRSEGYRNTSGEWRGSNNRAKSPDKQIAVSKMCPACGARSHQTAACPSFKRLSIDDRWKLVKENKLC
RRCLTPHTRWPCKGEVCGIDGCQKKHHRLLHSNNSSSEVSTQNPTNATVAVHRQISSSTLFRVLPVTLYGKNGQVNTLAF
LDDGSSVTLVERSLIDGLGVNGSAESLCIHWTGGVKKQITDTNLVQLQISALGSNQRFKLNEVYTVEHLGLPEQSLNFNE
MSARFQHLEGLPVQSYDAAVPGVLIGLTNIHLLATLKLREGRQNEPIATKTRIGWSIYGCQRGNVEVMPHRQLHICAKPA
DEDLHDYVQSFFSIESLGIAMVPQVEGADDRRARKILQETTIRTNSGRFQTGLLWKHDGIEFPDSRPLAEKRLRCLEKRL
SKDPQLYDNVRRQMLDFLEKGYAHKATTEELRSFDPRRTWYLPLGVVLNPRKPGKVRIIWDAAAKVEGVSLNSMLLKGPD
QLTSLLSVLFKYREREVAISGDIREMFHQLLIQEEDRSALLFLWRNCPNSPIDIMVMNVATFGASCSPAQSLFAMNLNAT
ENEADYPRAAAAIKHRHYVDDYLDSVDTEEEAAELALEVAEVHSKAGFEIRNWLSNRTTVLDKIGEVKPGSVKCFGADKE
TGTERLLGMVWRPDEDFFSFSLSFREDLQQLIEGEIVPSKREMLKITMSIYDPLGIVAAFVIHGKVLVQEVWRAKIDWDE
KIPWEIFCRWQQWLAVLRKMNTVKVSRCYFPGYSIECYNSLDLHIFVDASEEAYAAVAYFRVVDNGRVRCSLVSSKTKVA
PIQPLSIPRLELLAAVLGARLRQTIEEKHSLEIRRTFFWSDSSTVIAWISSDARRYRQFVAFRVNEILNLSSINEWRWVP
TKLNVADEATKWGKGPSFDSKSRWYHGPGFLYDNEEEWPKDCRYEVNNTVEELRPAFVCNHHVTEPAVDLERFSRWERLL
RSVAYVLRFIDNRMWQHRKTSSKIGALSRDELQKAERCLWRIAQFDGFPDEVTVFKYNLRSNSSHRRRLERNSPLIKLTP
AIDEYDVLRIDGRIQEADFVDFDTRNPIILPRRHRVTTLLLDWYHRKFQHANDETVVNQVRQRFYIPRLRVQVRLARKQC
MWCRVYNATPTIPRMGPLPKARLTPFCRPFTMVGIDYFGPYNIRSPTGRCTLKRWVVLFTCLTIRAVHVEIAANLSTDSC
KKAIRRFIGRRGAPREIFSDNGTNFVGASGELASEIRMINREISSTFTDIQTQWQFNPPSAPHMGGCWERMVRSFKTALG
ALPTVRLLDEEAFATVLVEAESMINSRPLTFIPLETAAHESLTPNHFLLLSSTGVRQPIKTPVDDKAAIRNSWNMIQNTL
DEFWRRWVEEYLPTLTRRTKWFEDVQPIREGALVVVVDGNVRNRWQRGRVVRTYPGKDGTVRRADVQTSCGILRRPVVKL
ALIDVDKESDTEATVLVTRRA
>BEL-78_CQ#LTR/Pao 465-2981 [Culex quinquefasciatus]
MWRSFLGFVVPGENVELKTESESDPEDRKPVVEQLLLTPKQRYAEKKRKMADEEVKALLNRRGHVKGKLTRIKTALAQPV
ISAAQFEVYKANIEKYYGEYDDLNNKILDSKLTEEQASENDARYLEYEHLYDEVLVKLRELTAPLERNQTVVRAGQAGQQ
IIVQQQPLSVPLPTFDGQYENWPKFKAIFTDLMQKSLDSDAIKLYHLEKSLVDAASGSIDAQTIKDNNYQLAWQTLEERY
ENQRLIIDLHISGILQLKQMTKKSSKELRNLIEECARHVENLRFHKQELLGVSELVVIHILSSALDGETRELWEASIQRK
QLPKYQETMDFLKKRCDILERCESAASATSAVQLVLPETSSKPTTRIASAAMTSNDVECELCGGSHANFRCGSFRGMSVA
ERWAKIRDERMCFNCLRKGHRVESCPSERTCKCGQKHNSLLHYERTQQTPRNNPGETPALSVPVEALPQVPTPRGEAWTS
GTGPVVSDADDEQQTTSCFSSGAQKSSRRVLLQTAVINVVDASGRFHPCRTLLDSGSQAHILSEAMAQKLGLPFEKCNVT
VIGANAAKTQVKKGVTLSFASRYVNFSDKISCLVTEKPTGRIPSEKIDISAWRVPRGLQLADPHFNEPHEIDLVMGSDYV
WELLRSEEYKLANGTVTLRETDLGWIVTGSYDSSPQLSCQVVHVLNAATQRTERVPFHGARRLVQQAESVKDRFSTATKI
AKKEPSGTSSKEEAVDQLGEKTFLHEEDPVKKCCFNSKQVLKCKEEKVIEPKRSALRDNDAGLPRVGGRPVSFPHGVAYA
GAVTANRNPPRKERAGARRPVGNPANRKQRPASGGLRFF
>BEL-41_CQ#LTR/Pao 26-1906 Comprises complete internal sequence. Similarity to N-terminal quart of BEL-13_CQ polypeptide [Culex quinquefasciatus]
MPIANSRELPCRRCGTPDVYTMWSYCRCRSGLPDANATRNASLPSGSTKISHQYRQECREVYAARLQQLRQDQLAAQEAL
ATKQREWLEIQARIKRDYQIAKAELQQKVEECENSFRLREEQIMSSGRFEVRGTITQQSAENKKEDEQHRVLFCESSNST
VEATKTTVQSGQDNPIGSTSGVGAGVDSNKPSAGKSTSVRTFAGVSRNDADWMSSLGETTCRGWEAAKTAVSSLPFTLTP
TVQTCVNDNNTHKSISSSCIFVNEPSLSRNKRSASKTNVVESCLQDVAAQLEVEFGGLVSSKKLIQDQLMVNRESGQQKL
SYQQEQRSIPERAFQDRDTQRLPERRNQQVPPLQDTGSPLVFFSMTQRGRLNPKGKSHDEPMFICTSITIGRWNEYSGAE
NFEKERKLVGQPGQNERQMSSSMQQKGMCGVSATWHEQLDKLFVLKIVLPNSETWDKSMFIHGTKWFSGVTAGRMMFPLQ
LQEGDRNNPGYTKAINQQYSRKSQSVVEAVVVPEVQHEIVRLWFNKNVDRNQVGVPMTAVSHSTAKIGDGELGRSGSYRS
RTLLGQFPRQKKIQWFQIDPGGKSSSDAGSSSTRAMQLVGQLSVTSAASTRGGNSGPERWTTLTVGE
>BEL-27_CQ_p2#LTR/Pao 6519-7049 (similarity to BEL-5_AA_p2) [Culex quinquefasciatus]
SADRAPEFTWWGKLFQFTHATYTYYIQVLSEAHHQLHRRPKVHPHKTNPQQQHSGDQHTGERHTTSVTPLWPAGPVSSLP
GWVSCSGFIEIYASILQQISPRGNLQRNQHQQDGISTKKKKASTDAPAPQPCALCGRQFVPPEAERVPLEHATHPHRRFA
AQGCTRRSAHGQRAGEG
>BEL-62_CQ#LTR/Pao 65-2580 [Culex quinquefasciatus]
MQETYQNCGVCLGDQRDGSMIACQSCREWFHHQCVGVFSTIVNGFWTCVLCLNLPSHERFAKLLKFGTAPTRTNSPVIAS
GSSPAVVTTAITTSSSPLSMQPSVVGSLTTCRDQGEQHVAGRSYSADESSEDWLSKKINVMKNLLITPVCSSKAARTFVS
NSFASTTTGAVNGYSVESCTPSFNSQNQLLYGSLQSQQLPPPHHGRSQQQQVEPQQSRQQSQQDGPQPKQAWLQLQPPLV
PTPQQLLARQVMPKDLPKFYGNPEDWPLFSSAFTNTTDACGYSNVENLARLQEALQGKALEQVKGRLLFPALVPQVMSTL
YLLYGRPELIIQTFLDKVRQTPAPTLDRMETLISFGLTVQNLCDHIETSGQVSHLQNPILLRELIEKVPAQQRLEWAFYK
QQFRTVDLRTFAGFMSMLVAAATEVTFPSARKHTRNESEEQENDQELCSSRSAGRAHRKRSSREGREQPENVKQSTCWAC
SGSEHKVKDCEMFKRWDSHSRRKLIEYRDLCRACFGKHGRRPCNAKHLRRGQYQLQKKQKTPEQETDGEVGLIVHHTCQN
STLFRILPVKLSWNGNTVETFAFLDDGSDMTLVEQSIADRLGIDDGEPVPLCLSWTNKVTRKEPKSQRIRLEIAEKGRSE
KYTLKDSRTVASLDLKTQTLDFGELAQKFPYLRGLPVSSYQAATPKILIGTNNANLTATQNLREGQIREPLASKTRLGWT
IHGYAEDEQKHKGYSFHVSGHREDHISNKQKHKHTERFDTSTNKKRLTPETSHKGANTDGLFKNQQFLAQSDGLLQRVGD
HQQRPKTVFGLLGHAYCSPKDVGKAQSTAEPEVHYGSG
>BEL-77_CQ#LTR/Pao 1367-7038 via tfasty with BEL-614_AA, 1 insertion (1913-2199) removed. [Culex quinquefasciatus]
MSSEARPNRRILQPRISFLISSLQQQHNMPITTRSNKTLSLKQLTTVFKQVKASMQDIFNFSADLEKSCTIADVEVRLGA
LDELWVDFNETLVEIQSHGEYVATEDATYEADRAKFSESYFLNKSRLITKSRELQAPPAVLEQTIRSEETSHGLNDHIRL
PQIKLQKFTGIIEEWLSFRDLFFVSLIHSKAELSDVEKFYYLRGCLDGKPAGLIDHLKITAESYTVAWTILLNEYDNDKL
LKKRQIQSLFELPVITEESSSDLHTLVDGFLRIVQTLDRVLEEANFKDLLLVNILSSRLDSITRRAWEEYSAKDNDTLKD
MTDFLQTRIRILESLPKKKADSKVVRQNQVRSKPAVVKASYNTAQESGGPCCACSGTHFLHQCKSFQQRTVSDREALLRT
NSLCRNCLKSGHLAKDCSSRFSCRNCNKRHHTLLCFKSGKDKGSAQYKRDNSKAATDESQASGHSSSSTSNQVTPEITVS
NSTQLFSTQVLLATAIVIIEDDEGNRLPARALLDSGSESNFISEHLSQRLRVLRNKVDISVSGIGRSVSKVKQQIRATLC
SRVSNFSRDMRFLVLPKVTVSLPTSNINTAGWTIPDNVVLADPTFSVSKGVDMVLGIESFFDFFETGRKISLGEELPALN
ESVFGWVVCGGIADSGESIRITCNVSARDKLEALVTRFWSCEEVESGSSFSPEEARCEALFAQTVQRGADGRYSVALPKN
EAILSKLGESRNIALRRLHGTERRLARDAHLQDQYTEFMDEYLRLGHMHKVEETDTVKRCYLPHHPVVREASTTTKVRVV
FDASCKTSSGVSLNDALLCGPVIQQDLRSLIYRCRIKQIMLVSDVEKMFRQIGITPEDRALQCVLWRPTPSAEVCTYELN
TVTYGTKSAPFLATRALKQLAMDEKHRFPLAAKAISEDVYMDDVITGMDDEDAARNLRIQLDEMMISGGFRLRKWACNRA
EVLRGVAEENLAIPFPEGINLDKESSVKTLGLTWIPNTDEFKVQFDITPTVAEDELCKRVVLSKAASLFDPHGWFGATIT
TAKIFLQQLWTLVDADGKRLDWDTPLPPTVGENWRKYEEQLPVLNSIRFARCVVIPNAEKVELHCFSDASKKAYGGCVYV
RSENAAGDVMVRLVASKSRVAPLKVQTIPRLELCGATLVAQLFKVLQEALDIPLSAHFWTDSTCVLSWLDAIPTTWATFV
ANRVSKIQTITEGHQWKHVPGVQNPADLISRGIMPNDIVDNLLWWNGPPWLALGREHWPNSTATVAHDEVETERRRTAVA
IVASNLQEFTDYYLSKFETYPILIRRTAIWLRLMKNLPLPDEERSRGFITSAELRQAEYVLIRRVQKEVFAEEWKALSAS
QPLPKKSPLRWYHPYIDRDQILRVGGRLTHSEEGEETKHPAVLPARHQLTRMILQHYHMRLLHAGPQLLLGAVRLRFWPL
GGRSLARLIVHQCNRCYRCKPSPVQQFMGDLPAARVTVSRPFSKTGIDFFGPVYVRPGPRRTAVKAYVCLFICLCTKAVH
LELVSDLSTDRYLQALRRFIGRRGRPAEIWSDNGTNFVGGKNRLQELFALMKDSEHKEKVAKEFADQGIRWIFSPPSAPH
FGGLWEAAVRSAKHHLLRVLGEETLAIEDMTTLLVQVENCMNSRPITQLSDDPNDLEPLTPGHFLVTSSLQSLPDPSYLD
VPTNRLNYWQQVQRKVQEFWRRWKRDYLSQLQSRTKRLYAAVPIEVGRLVVVVDDNLPPIRWKLGRIHTVHPGDDGVVRV
VTLKTASGFLKRPVEKICLLPRPDEQPTTDSTEEK
>BEL-73_CQ#LTR/Pao 336-5684  [Culex quinquefasciatus]
MSTPFRNSKRTPRTPPLSPSPSPTPTLPKTPSTPQVKSVAEQKSEKKKKEEKKKMEAQLKALVKQREAVRGKLLRVRAAL
RDSEEEPNPNVRNVHFLQLQKRALENIYGECNEVQNKIYALPLSEDQDTVQTEKYVEFEGVFNDVSLKLSTLIDVVPKAE
PAAPAAGAPIQQPAQHYLPPLQVPLPKFDGSYEKWYAFKALFTTLMNRYRQEEPALKLYHLRDCLVEKAAGIIDDEMINN
NDYDAAWALLTLRYEDKRIVVDKLVDKLYGLPKISQEDATELRKVIDTCTKNVDALRNQELPVAGLGEQMLINLIVGKME
KKLQVAWEAKQKKNVLSTYAALMAFLEEQCRISEKIDTKVKPAKESAKPKTAGRSHTLAVSESKNEQKCTVCKAAHELWK
CEAFKSKSVSEKYEILKKCGACFNCLMKGHRTRACSSGSCRHCGKKHHSSLHEDSPSQVTNSAVPTTPASDVSQTVNTPA
AGTSTTLCASAASSEKQTVLSTAVVLVDGKCSTPIPCRVLLDSASQMNFVTERFANLLSLKLKPADFTVSGLNGNKTRIS
RRLRATIRSRHGNFAAELDFLVTPRITGELPVKSFDASEWPISSELVLADPAFNKRGRVDMLIGAEYFWNLLLDGRYELG
PDRPVLRNTKLGWIAGGVIASDATVVARTLCQTSEEEPLIELLKSFYKVEACDEMCLEHFQRTHERTEEGRYVVRHPFNE
RKRELGDSREMALRRFLALERKLDKQPELKEQYSQFIREYEQLGHMRVIEEAPNEDPGSTFYLPHHCVLRPTSTTTKLRV
VFDGSAKTSTGVSINDVLRIGPTIQNDLTAILLRFRGFQFVFTLDIPKMFRQVRVHPEDTRYQRIFWRYDRNDFLTVREL
LTVTYGLGPSPFQATMALKQAAADHEDEFPRAAEVVDKGTYMDDVLTGADTLAEACELQREMTGLLAKACFGAHKWCANH
SDLLREVPEELRGNSFEVTDDSSKTIVKTLGVTWNPFEDWFSVSVPDFDDLEEVTRRKLLSQLAKIFDPLGFFGPVITYA
KLILREVGELHIEWDDPVPTDIGEKWRSFRIELTALREVRLPRWISWKGALKLELHGYADASDPAYGACIYVKGFFANEE
TEMRLICSKSRILPKKRKPKEKAISTPRAELLAALLLARMVVKFLSATELKFESVHLWSDSQIVLAWLKKLPQLLQTFVS
NRVSEIQKLTQNFHWHYVATHENPADLISRGVTPKKLIKSKKWWQGRPRTTVAAAADEIVIPDDELPEMRTGVVLAMTVP
VERFPMFDKLSSFTGIVRSMAYLVRLARFVKSRKTEVVKGRLTAKEMRTATLVIVRLVQREAFQPEILALMDGADTNHRL
NGLKAFLDPDDGLLRVGGRIKRAFVPYDSRHQMLLPAKHPITEALVRELHVDNLHIGQRGLLAVVRQRFWPLNVKSTIRQ
VIRKCIVCFKANPLKTTQLMGDLPSYRVQPAPVFSNTGVDYAGPFWIKSSSATRKPQITKAYVCLFVCLQTRAIHLELVS
DLTTDAFLASLRRFASRRGCPKTMHSDTGPNFVGAKTELHELWQMFQNECATKKITSYCVEKGIEWSFIPPRSPHFGGIW
EAGVKQVKHHLKRIVGERKLSYEELYTTLTQIEAVLNSRPLVPSSDDPSDYTAITPAHFLIGREMQAVPEPDYSHLKENR
LSRWQLVQTMLQHFWRRWTAEYLPELQNRSKWLKTKVIKEGSLVLLVDQNAPPLQWPLGRIVTAHPREDGVTRVVTVRMA
NGAEFKRAVTEVCLLPLDEDED
>BEL-1_DWil#LTR/Pao 2390-7391 via tfasty with MAX, 2 frameshifts. [Drosophila willistoni]
MSTEPSKTAPKSNGLSSPSSTPEKVRPPITPATVKRTDISRKFSSVRSRSESPISRPSSSSLPQGRRFSVKDSSEHKGRS
KLSTQTQIPHVVVTHCSDAPVTRSVSQQRREHSRMSLSDFILACDALTLFEARESEALTSEVPLFSIKMHLEQLKSLWST
VEMEHSRCHKALTVQTDEESLANISRIKAKHEYAYAAYVRCGTLFGERIEQLSAQMTSLMRQPTAPSRPAAWENLTARYE
NSRLLVMTQARQLLQIPAVAQESGKSLRELQTAFQGGLTALERSGVSTENWDVLLIAICTSKLPKATILLWEQSVPNKTV
VSNWSDLNQFLTDRYRVLDATEEHKSGPSVQTIPFGPRKSSATMKVQAFPAPSAAQVPPSSATEGPSTSNQLTNAQSYFA
STPGRGLLGTAIVTLHHRGVDHHIRALIDSGADSTFLSERVFSMVQPPFYPVDAAVTGMGQSDGGCADKVCLLMLSPPCD
RLNKIEVSALVVSKLSGAIPTAPFLNTVPTQCLDRPLADPYYNKPAPIDMIIGVDLFPHMWVLCGAIMPDPPVSRSVFAA
QTRVRPEAKLDVLLTKFWEVEDLPAKPEKEDDVFCERNFQETTQRGKDGRYVVSLPFKGPNSVDLGHSRPIALAQFLRNE
ARLLKDPVLKTQYDAIIQEYEELGHMIRVTPPQVENSYLPHHAVFKPDSTTTKVRVVFNASSPSTQGVSLNDVLHTGPTL
QADLTLQVLKWRFFQFVFNADITQMYRQIRVDPRHTPFQRILYRNRCGNIQDYELQTVTFGVNCAPFLAIRVLLQLAQDV
QAMYPQASEILRNYMYVDDVLAGAHTEADARLAIRELQATLQSAGFPLRKWTSNKKEVLQAIPREHLLREDFLELEDAST
AKTLGIRWQAAEDVFFFTVADPPLKESITKRQVLSHIAKLFDPAGWLAPFVIRAKIFMQQIWLTELGWDDVLPPLLLQQW
HEFLQDYPGLSRLRIPRWLNTSDKLSWELHGFCDASQKAYGAALYVRVRCGDQVDVHLLTAKTRVAPVKTVSLPRLELCG
AVLLADLWASIVSELPIPPATSQFWTDSTIVLAWLNKPPCSWSTFVANRVSSISKSTSGQSWSHVRSEDNPADLASRGVS
AAELSASRLWWHGPDWLQRAPEYWPTPHNELPDTQLEQRVQCHTTATTLLEDVSERFSDYGRALRVVAYILRFATKRIST
PSTVHLTNDELLSAERALIRTSQRREYLAEIRALGEGRPLPSSSTLLNLNPFLDQHGLLRSCGRLRAAESLRYDERHPIL
LPYSTHFTRLLVKFAHRITLHGGNQLMVRYLRTKFWIPRIKNMVKSHLKGCKVCIVHRRRLQTQMMGDLPRERITYSRPF
THTGIDFAGPFEIKNYTGRACLITKGYVCVFVRFSTKAIHLEATFDLTAERFLAAFSRFVARRQCPQRIYSDNGKTFVGA
SKALEKDFLNATKLDIMKAFPQHTLSWQFIPPSAPHMGGLWEAGVKSFKTLFYKSSSTVKYTFEELSTLLCRIGACLNSR
PISPMSEDPEDLLALSPGHFLIGGPLLSISEPEILVEPMSLINRWQRLKAIQQAFCRRWKSEYLKELHKRNKWKSPTRSI
QTGDLVIVSEGHLPSNEWRLGRIERTLPGADGLVRVADVTTARGSIRRPVAKLILLQDSRSPEPKTLS
>BEL-1_DPu#LTR/Pao 2552-7168 via tfasty with BEL-5_NV, 2 frameshifts. (fragment) [Daphnia pulex]
MQAHNAHLLQIQPFRAGDFNSLFALAADVRDAVSSVSEDHLAVFTFSTVVSSLSTKLPTQLQIDWGQHAYKLRPNLPSLK
DFDNWIDIAVGAEEYRGNRFSTAQKIVMTPALRQQSSYGADKSSAYRSPTILSNTIKEDTNRVPIPQCAACNENPGHRLE
NCSTFKKMLINTRAAFVADNNHCFKCLSKGHYGRNCQKTTIKCSLCGEAHHTLLHGADRQFPKKIGNLKILLVRAPSKSL
RPVLLAIVPVMAQEGAISVKSFALLDPGSEATIMSRALANKLMLSGPKLKIRFGNFNSSVVLDSEVVKFTIKSSSNVIIQ
ASNVFIVPNINLSPRKINGPLSKPQRTHLSDLELEKTDSSLVEILIGMDQLSAHSIKNIREPIDGEIGPTAIQTIFGWTI
VGKIPSFLTNGPSTKKNVNTHSIAEEVSLTSLADSFHSTESFGIDVVAPNVMSFDDSQCLKVLQTSIKFIRCGWQVDLPL
RYSNLNLPDNRTQAVSRYYGMERKMKKPEFQNVAIQYNAIIKKLIDSGTAVKVDKSELNGPMGMVWYLPTHYVTYPNKNK
IRVVMDWAVKFKDRCLNEELFRGPKLIPSLIGVLLRTRQFRVAISADIESFYHRIGVPQHHQTLQRFVFRPFGSQDPLST
FQMTTLVFGAVHASTAAIWVLRHAIRQDQQCSTISATIHEDYYSDNLSKSFETEEEAIKFSHDSKTFLGNHGFNLTGFAS
SSSSLLATFPPDDRAAPLRDLNFDALPTEYVFGLGWDCKNDCYRLRIKTMPSVTTKRTLLSALARSFDPLGICLPIITFA
KLLFQSSCSLRTAVPPYKKPTGWDEPLPCNIVAKWNNWAVQLQLLSEISIERCFRPSDFPLDKCVFDLIVFSDSSSAAFC
AVAYLKVTCCERIHWSFVMAKGRIAPVGIHSLSIPRLELQAAVAAVRLARTIKDELRITISSTEFRTDSQIVLHQIQSEC
RDYPTFVRSRVNEILQHSTPESWAFISGEANPADDGTRGQTPSEFKKSCRWLNGPQGVQEYTPSIAFLQLQDPENLPSCV
IGQLNVSPLQCSYPAIAKAINDCHTNLADLKREVAFQLIDVPASKTELTNSNLEDALRVCLITAAEESFQREMKALRQGA
PIPRDSDLRKVNPYIDPADGILKVNGRLEHAPLAESARHPVIISPDHRLAGLIINQAHVDAHHAGVEHTLATIRTKYYLL
RGRRAVRKIIARCASCRFNNSMPSQPMMANLPKERLQPYVTPFSSCGLDLFGPLYTVIGRRTEKRWVMLANCFSTRAVHL
ELLYSLSRDSCLMGVRRLIADRGRPVNIYSDNGTNFLAADKELQEGVKNLNSRLVADEVINQGINWSTSPPTGAHFNGVT
ERLVASAKTSLCAVLTDGRAINDEVLLTVLKEVASLLNTRPITHVSTDPFEPEPLTPNHFILGCHHPHLPPNVEDAFHGA
SRKHWEQAQFIVNQFWRNAMREYVPELIERKKWNKKTREMRLGDRVLVLDDNTRRGLWVVATVTKLFPGDGGVVRKVLVK
TSKSEFVRPIVKLCLISDA
>BEL-2_AA#LTR/Pao 298-5753  [Aedes aegypti]
MKAEAMRKNAHHHKTLLRRRDNIIGSAKLIKSFDDQYDVEQANQVPLRIERLDELWRSFETVQDEIEVIEDSDQEFSDLR
QEFHDMYFSLKASLITKLPTNEAPALNQAVPVAPPPPIPVMSVKLPELKIPEFDGQPEQWIEFRDLFKSVIHSNVQLSAV
QKIHYLRSSLKGEASRLISSIPITANSYSIAWKAICDRYENTNYLVKQHMSALFRIPSIKKGSATALAELADEFNRHVGI
LDKLENPNRHWNSFLVERLSSLLDEKSLLEWESQCDEEGTEYTDLLEFIHKRSRTLQKCAASCVAPASGYAKPAKGKASS
SHVASEHVPKCPTCKQAHPITQCDAFSKLSPNQRLECAKKHRLCINCLRGGHMAKDCRSSLCRTCGKKHHSLLHLPSLTS
ASSIVETPGESESPVTSQACAVICPSTTVPTSQSDGSRSVVNEPSVVHAMSIPQVVSSLRSSKSSIDRVCPPSSSSVVSS
DILEHEPSPTCLQQPAASLTQSNNARDSTVFLSTAVIRVKDVNDVYHFARAMLDSGSQSNFISESLCQKLNLKRIRHNLP
VSGIGQAIVNVRYKVNLTFASRFGGFDQLLECLVLPKLTVNLPCRSVDITQWNIPNNLPLADPRFNICHGIDLIIGAELF
YTLLETQRITLADEFPILQKTTLGYVVSGKASIQPTESVLCHVATNQELNAQLERMWEIEEFSHGKAFTPEEQQVEEHFI
RTAARDESGRYVLRLPFRESAMPLLGDSYKAAVNRFLLMERRFTKDHELRQEYTEFMEDYIRLGHMEECSRVAGPQFFLP
HHAIRRPDSTTTKTRVVFDASSKSHGQLSLNETLFTGPTVQPSLLAIVLNFRIPKYVFSADVEKMFRQVWIHPDDRRFLQ
VVWRPDATVPLKTYQLKTVTYGLACSPFQAARVLNKLADDEGDKFPLAAPIVTKCFYVDDVLGGGDDLDKTAESCRQLQD
LLSQGGFSLRKWSTNHPKVLQQIPEELRATSSLTEIGKSASTKALGLLWNPSTDLFGFQVPTLQPVDIITKRSVVSEMSQ
LFDPLGLLGPVVVSAKIFVQRLWAKQFSWDESLPKEETDWWKNFRSELVQLKNVTVSRCVRPSCNENYQLHCFCDASSKA
YGCCVFVVGPNDRGRIECRLLIAKSRVAPLRGLSIPRLELCAAVLGSELVHNLLATTNFSSPVTFWSDSTVVLQWIQSPP
NVWKVFVSNRIAEIQRLTRTCRWRYVPSSLNPADRISRGIQPSQIAEDLLWWEGPPFLSQSVDTWPESPKGIPSPNDFEE
EKRATVVLTAFEVDDTIFERYSELGKLLKVVALCIRFGRNCRRTPVDRTVGNLNAAEVDEALKRLVRMSQISSFPKEIHH
LTNKTVDTRCSYNFDSKSPLRNLNVFVDEHGLLRLDGRLKNITAPFDSKCPLILPAKHRYSLLIARSLHLRTAHSGPSLL
LATIRQRFWPLRGRDLVRRTVRSCITCFRCRPTECNQQMAPLPTVRVVPSRVFSRSGLDYCGPFNVRPLYGRGANIKMYV
AIFVCLAVKAVHFEIVTDLTTAACINAIKRFVARRGRLTELHCDNGTAFVGADRELNALRRRYLEQFQSDEWTNYCVEAG
ITFRFIPARSPHFGGLWEAGVKSFKFHFRRIFGGKSYTFDEFSTAAVHIESILNSRPLTPLTDHPDDLNVLTPGHFLIGE
PMFSIPEPDVTNTTVSRLSRLQEMRRSVQHFWKVWSTDYISQLHQRTKWRTAKPNVQVGALVLLTQDGLPPFMWNLGRVE
EVYTGSDGLVRVVLVRTNRGSFKRAVTQVRVLPIEDPEDDDQQRTTRSMVETDRFNGAQ
>BEL-2_HM#LTR/Pao 51-5330   [Hydra magnipapillata]
MDQERNYQREINMLNINIKCIERNTASSDKSSIILALDKITNLLARFEMAKDELTRKMLDDGESIDTVEEWLSKPIAEVE
AANAIKNEMVNKLDLINKNECVKRFEYEKQFMEHQLTIQKEAEQASLRKLQNEEEWYLKKLKTKETLRKSVGNNNEAVQQ
SVKLQKYTITKFDGDYKDWLRFWNQFTVEVDNSNISNISKFNYLMELVEGKPREDILGLPHSLEGYEEAKRILQDTYGKD
IWIHKALIKDLEGMMAIHNTHKIKEVHDFYNKLARTVRTLKTMHKLQTAQSFVYSLMDKLGPVREILTQNDDGWEEWGLE
QLVEKLQKYIERNPLNSDFNTEQIKYDKKNPNVQSRSYENRISAFKQHNSGNYDKSMMTSVGKNECIYCGLRNHKSESCI
KVLNVARRKEILKNKRLCYNCIGYGHSAANCQSRGCRKCNKKHHTSICQNVNATMDDKKETMGTVFNASTTVHPTVMAKV
NGEKARIMLDTGAGSSYICTNLITKLKLKPTRREHKTIEQLYGTVNKRVEIYNVTLESITIPEFHIKIECINAEKEILTF
LPNPMIKEVKKQFARLRRLKFSNDGEDDEIQPVHIILGAADYQRIKTTEPMVLGKNPDKDPGAELTMFGWTLSGKQMELS
SGIEKGFLLNTGRDEFEQMCSLEVLGLSDTNNESMFHQDFSEKLHQTNEGYYETRMPWKKDVVKLPNNRDLAIKRLKSTT
NRLEKLNKLEQYNEIMMEQISEGILEKVPEKPTGEIVHYIPHQAVIKENAESTKMRVVYDCSARKDAQSPSLNDCLEVGP
SLQPLIFDILIRNRMNKLCVLADIKKAFLQIRIQDMDRDAQRLIWYEDLKKMKLMELRFTRVIFGSSSSPYILGATIKKH
ISKYKDIYPKTVVALEEDTYVDDLQAGGETEEELIRFKYESTQILNEAGFQLHKWHSNVRELENNVEDKSTKILGHPWNK
ETDQLSIEFTTCINNGNKENLTKRKILSAINSVFDVLGFSAPVLITGKILYSRLCLSKIGWDHQLPKELLEEWQTWIKTI
SNKRTILIPRCVVSGRIIELELHGFSDASKLAVCACIYVVTSHQNSKTSNLLVAKARIAPKDLSIPRLELVAAHTLSKLM
NHVRKTLVNYNISKVFNWVDSTAVLYWLKERGSWSQFVRNRVQQILLNGEVKWLYVPTKENPSDLGTRGVSPEKLSSLWF
NGPIWLSYKENWPNQSEIFDNSYGTLCESIALKENVWMVTEEIKENRTFEELWNKYNYWKILRISSFIKRFIYNCRNKEK
IVGPIKTEEMIEAETVNIKHLQGSVVLKADVELKQDEKNLWRCHGRVTGYSPIFIPKGFLLTLRIIEHHHTKTLHGGVGD
TMGSIRERFWIPNLRVAVKKVIRSCNLCKRYRVKPLLPPTKAMLPHFRTDNVEPFAVSGVDFAGPLKYKVPKNSIKKCYV
ALFTCASTRAVYLKLCHDLSAVEFQRVLKEFVARKGPPQMIISDNAKTFVATGKWLLTLKNDENIANYLAIQAIKWRFNL
SRAPWWGGLFERLIGIMKKSLSKTIGKGMLTFNELEEVLLDVECSMNNRPLCYQGDQFDNQVLTPNVLMRGKPAILLEED
IALIAKEEYAIRRAKFIKNCKTHLRKRWMNEYVHAMEERQQVRNKGSNIKLPVVGSVVLIKEDVKNKALLNIGRVESEIK
GKDGVTRGLKIRLGNGYVIERPIQLVCDLEIDFKAESMIESKKNVEIGKKVETLKRVPRRAKLDARQKISCIMEDEMAD
>BEL-2_CQ#LTR/Pao 33-6449  [Culex quinquefasciatus]
MPPKMDPNRPRLRVSKRKRNCFECEQLDTKEMVQCDTCDSWYHYECAGVTSAIIDVDWDCKWCGENNETIPRDPENSIAP
QLPYLLEPEPPHQKQVSEDQRSVRSVGVGSMAASSSGRSRSARMRELELKRLEEDYRLRRNYLDKRFAIMRAYDCEESDD
DSLVEKGSQVAEWIQKTDQIGSRNKPGSALPAFPEQPPSNSQPAEQQASGQGQQAGAFQNPPAVLNQSSIIRASQTPLGH
LIGNTRDLTLEERPPRYLFHSTGYNGVPGFQVANTTEPQTNPQLATSAAQGYTQLAGHGGVLFQAPIVTSNPPAPSRGLP
IARNQLLEPAIQRSNPPIGQRTYPDWSRIQASTNGNRQIIPETRSTPNPPCYQSQINQQPNLPNNTLDLAGQGLRQEPSS
FQYSERASDQIQQGLMGTTQVRPNVLGAMSGQANGRTAYTGTNSQQAGLLNQGGNRNAVSDRLVEEPFQENPPRYLNESL
DNRGDETVYLLSRSQMAARQAVPKDLPDFSGLPHEWPLFYAMYNSSTQMCGFSNEENMLRLRKCLKGRALTQVGSELLHP
NSVASVMSTLKMLYGKPETIIQAVIENVRGLPSPRVEKLETLVDFALSVKNLCATIQACEIGDYMYSSSLRYELVQRLPP
TLQLEWAKASRGILTPTLFQFNTWLYHMAEDASAVMRAQIGSYKTDSKPRHKKESLLHVHVESDDGEIADAQTGSNTLPT
CPVCKGKCSLTAKCPRFVERSVDARWETIRELKLCRKCLQQHNNFCKQKRQCGVDGCTYLHHPLLHANKKAALTSTVTSP
PAECENSNVNVHQERTSEVLFRFVPVVLYGPSKEVHTYAFIDDGSELTLLEQGLADELGVSGETNPLCLKWTGDTKRIEP
KSQKVNLEVSGTSATSKKFSISNARTVDKLKLRPQTLVVDDLRNRFHHLQGLPIESYRDAAPRILIGVDHAKIGHVRKSR
EGKTKEPIAIKTCLGWCVYGCIATNLSGTSTVNHHALDICQCNQENGDYLHTAMKEYFSLDSMGVLTPERLLMSTEDERS
LQLLKNLTRRRGDRYESGLLWKYDGVRLPNSRAMALKRWECLERRMLNDPTLGEALNSKIADYLDKGYIRRLTDAELVIE
RPRVWFLPVFPVVNPNKPAKTRLVWDAAAKAHDVSLNSVLLKGPDYLTSLLSVLIQFREHRIAVCGDLREMYHQVLMRDE
DQHCQRFFWGRKDGTPEPNTYVMQVMTFGACCSPSTAQYVKNQHAKQYENEFPAAVRAIVDQHYVDDMLVSIETEEEAAT
LAHDVKWIHKQGGFEMRNWLSNSKTVLATLQESPQAEKNFNVSDGLPTEKILGMWWDTQQDCFTFKLSTRCEEELLSGRR
RPTKREALRMLMLMYDPCGLIAHFLMYLKVLLQEIWRSGIGWNDKIGEKEFEKWLLWIKVLPGVRNVRVQRCYRKHTSIN
AEVQLHTFVDASENGFAAVVYLRFQEGENIECAIVAAKTRVAPLKFLSIPRSELQAAVLGVRLANTVQRSLNIKVSQRFF
HTDSRDVCCWLNSDHRRYSQFVAFRVSEILESSDAKEWHWISTKQNVADLGTKWKGLPDLNPNSPWFRGPSFLWKPESEW
PAASRQYGSTDEELRPHLLAHIVNLESLLQPEEFSTWRTLKRRTAMLFRQANNWRRRASKQQPVRGPLTQKEHLEAEHHL
YRVAQADVFADEVASLSSSVSTKKKLSKSSSIYRACPFLDERNVLRVQGRTGACKYVDVDATNPVILPREHAITKLVVAQ
FHRNFHHQNHETVINELRQHYYIPQLKAVYRKVRKDCQQCKNDGAKPCPPIMADLPESRLAAFTRPFTHMGVDYFGPVTV
SIGRRTEKRWGVLATCLTTRAIHLQVAYSLSTDSCIMALRNIFSRRGTPSVIYSDRGTNFQGTAKMVEEVVRKIDQDKLV
AEFTSNHTEWKFNPPASPHMGGAWERLVRTVKQNLNKVLGTRVVSAEVLENALNEVENIVNSRPLTNIPVDGDLSPVLTP
NHFLVQSSNGLKPFVLYDDSSRALRNNYELSQILANYFWKQWVRDYLPTITRRTKWFTSTKPIEVDDIVIIADPRSPRNC
WPKGRVIATKIAADGQVRSATVQTASGGIYERPAVSLAVLDVGVEANAHRMSLTHSGA
>BEL-1_DGri-I#LTR/Pao 270-7279 via tfasty with BEL-21_DTa, 4 frameshifts and 2 stopcodons. [Drosophila grim]
MSDKQIELLKAQAKLREQVQKMINQSASPTSFEKILAEFRLNNSKLVNIGRIDHEYFNKKIFESTMAEVALYKSKETQVK
PKEKMVLTTTEPSTSQKAMEEEMLKSSNEEAYQTDRSARPKNPILEKLEMRLAGLREEMEIAQEWLANPARKELQKIKYM
LDVRMRTIEKIIKTLEMEDKSWTCSDDIDELMFKAECLIRGHRYELSDLPSTSTQEYPRQEAPKVDIPHFNGNAKEWPSF
FGLFTEIIHDREDISDTIKLNHLRSCLKGEASTMVSHLLIGSAANYQKAWNLMCKRYENNRKIFADRLNTLLELEPLRCD
SEERIRKFLDVATESIYIIKEKSKIGNSADVIFAQILLRRFSTEALQQYEQHVKTKNRDIQSLEDVQEFINQLYHAVDSV
QKNVVKETTHRQQRTCRFCAISGHDINRCQKFKAANLNKRKEFVKMQHLCFRCLGTHAMAECRKDWRCQQCNKHHNTLLH
EETKNESVNWLKQNKGQGTLLATAVVNIRSANGNYEQLRALMDGGSQRTLISEEAAQLLRLKKNKQKVEIQGIVSNGVEL
AKHSVPLEIKPRFSSSFKAKTTALVLPKLQRALPSKRIDMDINTDWKNCTLADPNFNMPSRVDMVIGVDLFPLIMMGQVR
TINGALGQKTRLGWIVSGNIARATPKKIMTATTTVHIDDLERFWELEKxEPMxQENLHCENYYQQTTSIDKDGRLIVSIP
FHSTIELGDSRKQAVARLLQMEKKFKNYQMLYQEYNNFMKEYLQLGHMVPVNTTGKGKYYLPHQAVIKQDSLTTKLRVVF
DASAKATCGRSLNDAMSIGPKIQRDIFDILSSWRMWRYVMTADVEKMYRQIKITPIDQEYQYIVWRENQKESIKEFKLTT
VTYGTSAAPYLAVRSLHHLADLYCKDDEKLTHIIKKDFYMDDLMTGANTIEDCTAIQQKIRAVLNKGGMHLRKWVSNDKK
IIASITNTNKSEKIAITKDETIKTLGLLWDPARDDFTFSVKVPHLGHISKRSVLSQLARIFDPLGWLTPVTLQGKCFMQE
LWKMSFKWDAELEKGLADIWRNFANELPALTSIRIPRWIGSKGLTAIELHGFCDASEKAYAAVVYAKIGSQVTLLASRSK
VNPLKNKKTIPKLELCAAQLLAKLLFRISSTMNCRGQINAWSDSQITIAWITNKRSKDKFVKTRVDDITSHLPSVKWNYV
KSEENPADVASRGITPKKLEHHSTWWHGPQWLTQPASEWPIQKEEEILIVAATLNEDDPLTKLLSKYSSLSKLESVIVNI
LRFIAKLRAKITQTSSADNNLWSKAKSTIVKLQQQLDFGKEIHQQQNKKRLEAKNKLLPLYPFLDDEGILRVGGRLQNSA
LPFGIKHPIIIGKSHLAWLLIDKAHKMTLHGGIKLMKNFIQREYWIFGCRNLIRKHFRACVTCIRYRQESINQIMGNLPT
YRVIGEFPFYATGIDYAGPFQIRCSKGRGQKAYKGYVCIFICMATKAIHLELVSDMTTDKFLETLHRFFARRGKSKHLYS
DNGTNFVGAARKLNVDLEAAILSNTKLAPILQKDGITWHFIPPGSPHMGGLWEAGVKSMKYHLKRILGNNSCTYEELSTL
LCRIEAVLNSRPLISMENESETDDVLTAGHFLVGRPLISAPENMDVHGQIGSLDRWRYIQRMTAEFWKKWKEDYLVSLQK
RTKWQSDKENLKEGQVVLIKQENTHPGKWPMGKIIKTAKGEDNKARVVIIKTSNGEIKRSFNKICPLPTQEEEQKTLHRS
TRSNMTAATILSLLMMFQVTTGVIISNQNSSKIHIRELENESAIFLEKIGKVEVTSSSWDFLFYFNLQAYSEVSRQAPAI
LEKAKGLCPKFMEFEQQCLSMTARVGRQLDAIEENNNLIMEPSYQRKKRYCETIFVCPNGWFDVSSKVISMVNMKTLKTN
QENLKGYMENQTSVINATVNLVKTTTEKVNENFNDMTMRLNDITESIKVQYHIHREAIKFLLLILQLKDWTDEAESIQEK
IIDLFMDLNQGRLNPILIKPSQMMKEINKVQDVMPRNHILPGKTAGHKLQTAYKLLAAHGIFKDEMIIIKAKIPLYLNQE
SAIFKIIPIPFIGNSQKMIPAVAANYMIYNTALNTFHLMSDADLNKCRWENEETRVCQGNWAWKDAEENFCETTPMRPHS
KMLCSMDEYKEQSFWIKLGAHNRWLFKTFENTSGQIQCSDSHHQLVRLPKVGILDLTEGCSLRLKGVTLQAPQSLHTSFK
VNFSTHFIKEADDEAPFELTPIGTLTINNTKELQKLHEKIQYLNDHKVHLGDLHFFTASGHVSLILVTVVIIGLVVYLRI
RYVQNRELINITFTAPPE
>BEL9_AG#LTR/Pao 234-5474 [Anopheles genus]
MDKKIKAVQLKKRIALENIKSLERFQAKYSSDDAKQIPEVLEDLAKHKEEFFTAVSKLEELEDKDEAVEASIMERIDIEE
RCRKLKSFLRERQPKEEGSLNDTTGLASSTLAFGRPHAPNLRLPKIELPTFDGDHTKWLSFRDRFIAMIDASAELPSIAK
LQYLLSSLKGDAAVPFEHTPLTADNYSVTWAALLKRYDNSRLLIREYYRKLHYLPGVQLVCVDKLTHLVDEFTRFVNGLK
KLNEPVDSWDTPLSNMLLMKLDRETLLAWEKHSVHFTTDKYKDVIDFVQDRIQILKSTNNFVKDQAASGIKVAGLIRQPG
QRRFIANAATSRSAPAASTAHTQQPKCPLECSEDHTLRNCPVFIAKEVQQRRDVVASKRLCWNCLSSNHQVRACKSDYSC
RTCRERHHTLLHHSPPYAPPATVTLSAQSNEDNVFLATANIQIKDDYGNTHEARALLDSGSMSNFIAEEFARKLLTSRKR
VNVAVSGIGNAVQQIKGSIVATVQSKTQPFATEMTFLVLDTPSANIPTSPTDVSSWKMPDVALADSTFNSPGQIDIVIGG
DTFWELHTGRKRSIGRGKPWLVETHFGWVVTGNTHHSSVGPRLCHLSAYDTPLEETMQRFWESETIAEDPVLSVEENACE
KHFAATTVRNSSGRYVVSLPFNSNPNIVLGESKEIADRRLRCIERRLNTNAKMKEEYVKFMKEYEHLGHMKRLTSPANDS
VEHYYLPHHAVIKESSTTTKVRVVFDASCKTSSGYSLNDKLLVGPVVQEDLLSIILRFRSRAIALTADVEKMYRQILHSP
HDRNYLRIRYREHPADPISTFELQTVTYGTASAPFLATRTLKQIALDHKEEYPLAMNAVMNDFYVDDLLTGTDDLSEAIV
IQRQISDMLNSAGFTLKKWASNRSEALKNVPSEDVAVQLSHEWKSSKQVSTLGIVWEPATDTLRFRIEIPPTTPSMTKRL
ILSYIAKIFDPLGLLGPTIIIAKMFMQQLWALKIHGKAYDWDSELPSHLQHEWSKFHSTLSSLRNLTVPRYISQCTATSL
QIHIFADASQLAYGACCYIRAESMEGVTVQLLTAKSKVVALSNSHSIARLELCAARLATLLYEKVQQSLKISATTICWTD
SMTVLHWLNSAPNRWKPFVANRVAKIQHTAGIQCWKHVPGSDNPQADDISRGLTPEKLLVCERWWHGPHWLARNSEEWPQ
NTPSPSEDESAEEEKLSSRVASTALICEFRNSLFSRFSIYHKLQRVVAHCLRFIQNAKRRVGNKVHAKDIPPLTVDELKA
AELKLCYLSQQDTFSEEIQHLQKGKEIPKNSKLKWISPFIDTQGILRIGGRLSNAHLSESEKHPVILSSKHPLSALLAVS
IHLSKLHAAPQLLLTTLRQSFWIIGGRNLCKSVYHSCHACFKAKPTLIKQSIADLPTSRVTPTRPFSVCGVDYCGPIYIK
QTIRNRSPIKAYIAIFVCFSTRAVHIELVGDLTSTAFINALRRLIARRGQISELHSDNATTFKGAAHELNRVYKMLKSDE
HDRAAIFDWCAMNHMKWKFIPPRAPHFGGLWEAAVKAAKKHIVRTIGTTSITQESMLTLLAQVEQCLNSRPITPLSDEPS
DLEPLTPGHFLVGGNLQAVPIIDYTETPSNYLREYQLVQKHLQTIWARWYPEYLQQLQARAKYCNGKSAVLKENTLVIIK
EDNVHPTSWPMGRIVAVHPGKDDVVRVVTLRTASGKQIVRAANRLAVLPNPDVISNLEQKETTGTE
>BEL3_Cis#LTR/Pao 36-5954 [Ciona savignyi]
METKLPKETSTSFEIETNQQTRDSRASARSDQTDVAMQNXAGEENVTTRKHRHLDNELXDGDNFESWXLMEGELNDKLDV
LDMAIIGNDFVGVQNASYNLSSIRSNMETIIEKFESTERERLCSRITKCKELLAKAKQEAKITVIQLRQERISSKSNSYK
SSTSKRSSRKGESAEEMIKKERYKQNIAAAGLKAKLAFTRKQNELELAKMQADKDLSLNRISCEIAENDARASACLEAER
IENPFGIRPEDILELPPVNKCTSFREQMNHAEHTSIPQAAESVLATTTERHERIAPKSTFNYNTPLPITTLPSVSYRLPD
IKVDVFDGTAIKFPSWETAFDALIEARSSCVAQKLNLLQQHLRGEPKEVVDGFFLLQSEEAYEAARSTLKKRYGNECVIS
KAFTDKLYSWPQIHHSDSLGLRRFSDFLIQVLTAKNKIASLNILDYPTESSKIISRLPLFIASRWKDAVIDWKERNAGSY
PQFKQLVEFIERQSEKENIPELQKTKAIXNRRTASFATRSNDSQDGPRKIDGKCFYCGERHHIDECELFLRIPRRERKDF
LRIERLCYSCGSSQNHIARQCRQRVKCEICKKTHLTCLHMDWEIEKTECKCTTLCGNAIQGDDSSMILPVWVRSTKAPST
EVLTYCILDPQSNSSFISEELQECMGVAGTDTNINLCTMMGRNNVSATIRIRNLEISSFDRSVRIPLPAIYTRPEIPAAR
SQIPRPEYALRFKHLAKISQQISPYKPHVPVGMLIGTNVPCVIRPRDIVCGKENEPYAQKSILGWGIVGIVCKNHPGVGD
LITHCCIASEECANGAMIINGCKEXISPQQVRKGMELDFHEKECNDGSGSKLSLQDKKFENIIGENIAQLLDGGYQRPLR
LKHNNMRPPKSRPIAKXRLGHLKRRLQRNGQYKSDYKEFMXNVIKLFDKSVDKPSMYENTNRINYIPHTGKHYSKKXENL
RVLFDYAAEYPGISLNDYLLQGPDMLNSLVGILCRFRLHRTAIIADIEAMFHQFKVEKPYRDLLRFLWWKNGDLEKPIVE
YRMKVHIFGAVSSPGCANYGLRKAADDGEAEFGIEAANYLRKNFYVDDGVISVPTTENAIALIKDSKALCAKAGLRLXKF
ASNDRXVLKQIPLSDRSKSLRDIQIGIHRLPRERVLGITWCLENDSLCFRIELKDTPLTRRGISATVSSVYDPLAFTAPV
MLEPKLILQQLCREKADWDDDVPENIRSRWEKWRYXLKGFREVEVQRCYEPPEFGTVVTRELHYFSDASTVGYGQCTYLR
IVNSQQQVHCAFVSGKSRVAPLKQITIPRLELTAAVISAQVSAYLKQQLYFENCREYFWVDSKVVLGYLANDVKRFQIFV
ANRIQRIKDYTNGGDWLHVKTAENPADLASRGMLPNQLTALSPWLRGPNFFWRTDFLQPDVSNMLEEEDVQKELQLEMKR
VAVINTTVRPLDRFDIDRLLHISSWFRAKRAVANCLRFTRRLKNKTLVPVTRQLMHEAEVIILKGTQLSYFPEEYASLMS
RNRGKGCNSSSKSKLNSSLLRLSPFVDDXGVIRVGGRLQYANWGFEVKHPVILPKVGHIVELLIRHSHEKVQHKGXTGTQ
NCIRQXGYWIINGSSRVAHYISKCVICKRLRGGXQTQKMANLPTDRLHECPPFSYCGVDYFGPFYIKEKRSMIKRYGVLF
TCLVSRAIHLETSNTLNTDSFINALRRFLARRCPVLQMRSDCGTNFVGAFNELKSEAGSINQESIKQYLLRQDCDWVPFE
FNPPHASHMGGVWERQIRTVRSSLELMLRRFGEQLDDETFRTLMTEVENIVNSRPLTHSGLNEAGEPEPLTPNHLLTTKL
KPLLPPPGNFQXTDMYVRRRWRRVQYLANVFWSRWRKEYLQTLQVRTKWRTIQDNIQVGDIVLLVDENATRNIWKMGKVL
KVYPSEDGLVRKVNILVGDGRRDERGKRISPSTVLDRPIHKLILLLRTGEES
>BEL9_DR#LTR/Pao 34-5955 [Danio rerio]
MSVSEANSSSPVQRSVRLRTLPAHLENYILDINLPSCLPSSTFAANVVGDILASSTLAPMSKSEQIQSNKELSLRELMEN
LSAAEQEESNEIAQLTSRLSLYEKRQQRRQDMMLRINAFLHEEEADSLIVQGADAAIQKGAHSQESVPHISSTAEHSSKI
PAIYLASQPALMSPEQKRSDLPPISSAPVTPNTPYVVQSTNIAPPASQTLPLHNVSSIHSMPSSYFMSPRLHADPDAAQI
QIRTPVQYGHQSPPKLIRSSGLEDAPRLPQQQWAINYPVTVPHMQPSVAHPGNHYAYSAQPDYRSAYHQPYAVHSNEWPQ
PIDYRAAPPVHMPLYGAPKPSIPDFNADNERDFANLKLALDNLLDSHPELSEKYKYHVLLEHLKLPEAQMIGQSCRHEAH
PYTSAMQALQLHYGQPHQLAQSEIAAILNAPDVKVGDASSFQSFALRVHLLVSMLLSLEGSRGIELSCCSHVDRLLSKLP
KYLRDNFIEYLQIQGKLNVSSLNPYNLRDFSGWLQGKAQQQRLSNKLVERYQKEKFIPQAHGRTSTRPRGQSTLVYHGVE
SQSNRAPKPESQPPQWRKSKVHCLFCHSKDHYITQCSDIKEQSADNLMQWIVEGKRCWKCGRSHSPESCNLRKPCGMCGE
IHLQVLHGAAEKRFKAKQTTALSSRIYLTPSNSSGRVLLKVVPVLLHNEDRTIETFAILDDGAERTMLLPTAAQKLQLEG
KEETLALRTIRHDVTFLTGSIVTFDVSSMLNSGTRYRIQNAFTAAGLDLVEQSYPIKALQHKYAHLRNLPLQPFKNVQPL
LLIGSDNSTLITAEKTVQASNQMGPVAVRTKLGWALQGPEGLLNKGTTMTQSYFFTASAAHDTLYRDVERLWQLDSLPYR
SEKVVIRSRQDQESIKILDTKTCRLLVNDVERYATPLLRPAEAPKLRAPKESVLANLRNTEKRLRDQPEKAAAYKGEMNR
LIQAGYVKQITAEEAENSEESWYLPHHLVYHNDKARLVFNCSHVYKGTSLNDQLLPGPNLGPSLIGVLLRFRQHQVAISG
DIRGMFHQVHLLPEDTPLLRFLWRDLQQEASPEIYEWQVLPFGTTSSPCCAIYALQRHVREHPRSTPGLIESVERSFYVD
NCLESHPNGAAAQARVDDLRSLLADGGFDIRQWASNRLSVVAHLPPEARSKDMELWLEHNRSDQREPALGLCWNCSSDTL
GYRYRPIEYSTLTMRTIYKILASQYDPLGFLTPYLTRAKVLVQQLWAKRRDWDDPDLPLDLCESWKQWESELPNISAISI
PRSYLPDGMDQPNTEHHLHVFCDASEKAYGAVAYLSSTQGGATNVAFVMARSKVAPKRQQTMPRLELCAALAGAQLANLI
QTELSVTLQRTTLWTDSTTVLEWLQSESCRFKVFVGARVSEIQELTDLRAWRYVDTLSNPADDLTRGKKLLDLATPNRWS
KGPSFLLQAPDCWPEKPHTAPLLQSDELRNITLCNLVSVQQQDSVPDASQFTSWKDLVEAVRLQCQGTGEPAQTQPSNSY
RAAELTLLRACQESSFPEELTSLKTGQPVHINSRLRHLAPELDEATNLIRVGGRLRRMQPISDFEIHPIVLDSRHPATAL
LIKDYDERLLHSGSERVFAEIRRQYWILKGRQAIKKHQLQCTECQRWRARPRIPQMADLPSARLRIFSPPFHSTGIDCYG
PFIAKIGRRHEKRWGVIFKCLTTRAVHLDLLNSMDTDAFLLALRRFIARRGRPVEILSDRGTNFRGADAELRAAFEEMET
QLQQQLASYQIEFKFNPPNAPHFGGVWEREIRSIKNALQVAVGTQPLPEDVLHTILVEVEGIINSKPLGYVSADIADPDP
ITPNMLLMGRRDASLPQAVYAPETIGRRRWRHCQNIIEHFWIHFLRDYLPALQSRYKWQQQKEAIALGTVVMIVDPNLPR
ADWPVGRVLKLFPSQDGKVRAVEIQVKDKVYTRPVARLIPLPGLPDSAKDQSA
>BEL-1_DBp#LTR/Pao 451-5692  [Drosophila bipectinata]
MNSSGAVTGAPTPTRSAILKCKALGILQDLQRIQGALQPISKVDDAMLHVRHGQIATMFSDFKAIHGELEDLDILQISSD
LRWTVSELVATMQAEIEHETTLRSSRIAAHSTLANGMSTMQADPGLGQSFQVLPPLPLPTFSGGYSEWAEFYSIFSTIVG
SNPRISKVEKLQRLRSCLRESAFEAVRSLEVSDENYDVALNLLEKRFNNRRLIFQAHVNEILGLSLLESGSIAALRGLSD
KFNAHMRALQNLGTSVQIASCIIVQVLLQRLDPATQAKWEESQNSSGSDAIPTWESMAEFLEQRCRTLEAMDVAMAAYAP
GAHVGRRRGANNSRSSFIVTNSLPSTCALCGGWSHIMSACPRFLSMPPEIRLGEARRLGLCRKCLQTGHHMRECLAANCR
SCGRRHHSLLHFLEPQASSGQPLVGPPTSAIAEVAEPVASSPSTANALVAQGRSGDISLLATANIFVRSRAGSLVPCRAL
LDSGSQVHVITSRLASQLQLRRYKSFMAVSGIGDTGFATDGFSVDVLLRSHCSEYSALVNAVIAANITDLQPSFSLDVSS
WNIPGNLSLADPEFFRPQRIDLLIGASLFYELLCVGQIKLSAGLPLLQKTRLGWVVCGGGSHVQRRSLVSTAHKDVPESA
TMLDDQLDSLLRRFWEIEDCSEPIVKRTKEELDCDAHFVQHVARLDSGAYAVRLPLKCGSKLLGESYPQAVRRFLSLERK
LCRRPQLKEQYAAFIKEYLELGHMSPVPXDASVTGQYFLPHHCVLKEDSSTTKLRVVFDGSAVTTSGYSLNDVLMSGPVI
QPKLLHILLRFRCHRVAITGDICKMYRCVRVFPEDSYLQCILWRDSTQDELQVFKLETVTYGTKPASFLAVRTMHQLADD
EQLMFPKGAEILRRDFYVDDLLSGGDSIDEAISIMQQTSAILAKGHFRLRKWCSNVADVLDKVPEEDRESFLRFDDGSNF
TKTLGLAWDPATDRLLFSFEGIQSISKPTRRIVLSSVARLYDPLGLVGPVISKAKIFLQKLCREKLSWDESLPQALHCDW
NMICSSFVSTQRAEFPRWVLTSKSEVEVHGFCDASIEAYGACVYVVSKGAGSASYLLCCSKSRVAPLKTVTVPKLELSGA
ELLARLMSEVEQLKVYVGKYFCWCDSAVALSWIREEPSRFNVFVANRVSTIQKLTREMEWRYVPTSLNPADILSRGALPN
ELVENKLWSHGPPFLIGSQEAWPTAVPSERSTLELRARVLLIQSPYVDITAVSKYANSFPALQRVFAYVYKFSQRIHHNG
VTASDIKSGTQLLLRLVQRVHFWEDIKALQNGKXIAVSSALASSSPFLDKFGLLRVDGRLKNSSLDFDSQHPIILPRSHP
VTQAIIVDFHERNLHTGPRALLAIIRSQYWPIGGRKTVTKAIHKCIRCFRTKPRLLEHIMADLPEQRVSGSQVFGVTGVD
FCGPFYYKPEVRNKAPVKCYVSIFICFATKAVHLELVRDLSTMSFLQALKRFICTRRRPQHIWSDNATNFVGAKNELKEL
RRLFLSEEHQRALLEFCSMESIEWHFIPPRSPHFGGLWEAAVKTAKHHFYRAVGSAVLGFEELRTLLCHIGAVINSRPLL
SLSENPADLDVLTPAHFLTGGPSVSFIEPDVTKLNFNRLDSWQRVSFLQQSFWSRWKEEYLSLLQQRSKWRASGPALAPN
DVVLVKDENLPPMKWPLARIMELIPGRDGIFRVAVIKTSSGITKRAVTKLCLLPLKDEVGVEAPTGGR
>BEL24_DR#LTR/Pao 638-6628 [Danio rerio]
MEAVHAEEAMEDTHSTHEEVHAVKQADEMSLPTVEISNPVVQQVRSSTRERSFTERGLEMREQEAKQQEKAFHKAYNSWK
ETAKDCRSTLKMFCSRENLEQIQQDIQNQCNLVHQHYEPILRNHATSPDIVNRMDACAALTAEIIDLVSKRLETIGEDYN
EELVKERVRQVLNKDEYGSIFGCTKTNTVMSESSLGSGNQSKTSSKISSKRAEAEAELAAKQEQAKAMQEIHDQQAKLNK
MESEWKLSEAKMLAEIKQREVEMQLKLEEERKRLHQLQVDKEVKVAAARVKVYNDLEGISQFNDKEIDSSIHRFQLNPEA
ELFLPQQTFKAEHEAQPSQNNVSLAQAIADSLSTHRLPVPEPMIFAGDPLKFIDWKMSFIALIERKPLPPGEKMFYLKKY
LVGEARKAVEGYFYRNSEDAYHGAWKVLQDRYGNSFILQKAFRDKLMRWPKIGINDPLALRDFTDFLQGCAEAMPHIKGL
SILNDCEENYKLLKKLPEWVVHKWNRIVTEELDASGDYPSFKCFTEFLQKETRIACNPITSPFMNMKNSDEKFPKRAKAL
STKTDVKEFSSKGLNTSSVKSKVSCIVCKDENHSIVQCSAFGEKTIEDKKNFIQENQLCYGCLRKGHIVKKCRRRHKCGT
CGRNHPTCLHEERHMVSPKPLNKTSTEVQASQEVQKVMAHALTQSSSATSSIVPVLISTVEEPQREVLTYALLDTQSDST
FILEDLLDDLNAVKQPVQLRLSTMTAVDTITASNRVCGLQVRGLQAANSIQLRQAYTRDFIPVDKSYIPTKSTALEWPHL
KHLANQLPPLQNCEVGLLIGYDCPSALAPLEVIIGHENEPFAQRTELGWSIIGLSNPHLDRQGNQSFVHRVAVKEIFVPS
PNDVLKILESDFNEKGYEDKSVSQEDVRFIQHLSTNIKQKDNGHYELPLPFKSISQPSLPNNRRLAVARLQQLKKKLKSN
KQYSDDYKVFMKEVVDKGDAELAPEISEGETVWYIPHHGVYHPQKPGKLRVVFDCSAKFSGISLNDTLLTGPDLINSLVG
VLCRFRKELVAVTCDIEKMFHQFLVPPDERNYLRFLWWEDGDWEKEPQDYRMTVHLFGATSSPGCANFGLKYLAQQYEVK
HPTASEFVKRNFYVDDGLASVRSIDEAKELITDAQALCKQGGLRLHKFNSNKEDVLCCIDPSERDIVSKPLNLNPEATPT
GRVLGVQWLTRDDNFQFNINYKDQPSTRRGILSVISSLFDPIGFVAPFILQGKCILQELCRKNIGWDDQLPEDMYSRWED
WKGGLQRLKEVVIPRCYHPDTFNEIIETELHHFSDASNIGYGACSYLRFKNDKGKVHCSLVMAKARVAPTKVTSIPRLEL
AAAVLSAKISVMLKTELEMKIDREFFWTDSQVVLAYINNEARRFHVFVANRVQLIRDITDSSLWYYVNTLENPADHASRG
FHASDIATSTWLRGPKFLWEQEVNPTPHTSANLLVGDPEVKPVQTFVTTVSDSSDILSRFRRFSCWSMLLKVVARIKRLG
LKQKCSTDHITVEERQRAAEVVIKLMQQEAFSKEMRMIENGIALPNSSALYQLDPVLDKGLLRVGGRLKKSSLSQDLKHP
VILPRDSYITKLILSHYHAKICHQGRTQTQMQLRMNGFWVIGGSKSVAKLIHKCVQCRRLRRPTEEQRMAELPKERVEVS
APFTFCGMDCFGPFVVKRARKEYKRYGLIFTCLSSRAVHIEMIEDLSTDAFINALRCFISLRGAVCKLYCDQGTNFVGAR
NEFKDCLKQVDIKTLEVFLAEKQCEFAFNAPSASHTGGVWERQIRTVRSVLNATIALCPGRLDDASLRTLFYEAMAIVNS
RPLTVDGINDPNSLEPLTPNHLILMKSDVALPPPGKFVKEDMYATKRWRRVQYLVEQFWSRWKKEYLLNISTRQKWHTPR
RNLRVNDVVIIKEDMLPRSQWQLGRVVETVKESDGFVRRVKVRVAERKLTNKRNQTPKLSIIERPIQKLVVLLEED
>BEL-2_NV#LTR/Pao 113-5368 [Nematostella vectensis]
MTTEEKFTKHIGLADIKLKDIMSTTKDTGELEIALESAESIIKSLEKVKDATADYLLDNEKELSYIQEWSAKAKAEIQPF
REMRLEIKKRLENARDQEKEEEMEKELAMKKKFGDLAAKAGNSGMVESSPGKPGMVQAVKLQKYTITPFEGDYKDWTRFW
NQYTVEVDGSTIAQISKFNYLLELVKGKPRDDILGLPHTPEGYEEAKRILQNTYGKDIRVHRALIKDLEDLPTISDITKL
SSIHDFYNKLARIVRTLSTMQKLESAQSAVYTLLDKLGPVREVIVQRDDDWEGWGLIQLVENLGKYVDRNPILQGEDTPT
PSLTRKPQGGQGGQHNGRERMLMHQQNQGPHPPQCVYCSDKSHKSKDCTKVLDTASRREILMQKKLCYNCTKGGHMATKC
KAGNCAKCNSRHHTSICDRVQSSLPPSTPANPGNSRDRFYGAVDQVHTTLHATAIANVNGIPARIMLDSGAGSSYISSNL
LTKLNLKPSRVERRVIEQMYGTVDKQVELYKIQLGSTVLDSFRMELHCINAEKPIITHLPNPRIPELKKKYNKLRRLTFS
DETSTEDKLPVHVILGAADIQRIKSTEPAVLGSDPDKDPGAEFTMLGWVIGGKAAISATDTEKGFFLSNSQEEFNQMCSQ
EVLGLKDSDEEGGEFHKNFQDGLQRLDDGTYSTRLPWKPDHTSLPSNKRLALARLASTTRRLEKTGRIEEYHDIMMEQLK
EGILEPAPDTPTGENVHYIAHTMVTRDDAQTSKLRIVYDCSAREDDNTPSLNDCLEVGPPLQPMLFDILLRNRMNRLCLT
GDIQKAFLQIKVDTKDRDCMRLFWYDNLKDRNIVEYRFARVIFGSGPSPYILGATLQKHVASYSDKYPETVYQLLTNTYV
DDVQTGGDDPEQLLRFKQEASEIMESGGFQLHKWHSNVLEAEESTSAERADRAVDRPPVKILGIPWDKNKDELTIAFSDS
TEEEVSGALTKRKMLAVINRIYDLLGLASPVTVIGKVLYSKVCLSEKRWDEAITDVEIVREWNKWLKSMKACPSVSIPRS
VVDQHVTRIELHGFSDASKTAVSAAIYVVAHHADSSVRQTLLVAKSRVAPKNQSIPRLELVGAHTLTKLMTHVKEVLQGQ
PIQIYQCWVDSTTILYWIKGKGTWSQFVRNRTKVIQERDYLKWNYVPTGENPADIGSRGAGPGELSDMWLHGPNWLSDKA
KWPPQPEVTDNDEVASETVKSRKEKLLVATEEPEEKGQVDALLEQCSSYWKLRRVVAYIQRFGHNCRSKSKRTGPLTTEE
INKAESTLIRRAQAAKREKVEASMEVQIGEDGIARCVGRIAGYQPIILPRDHKLTTLIIKQVHEKAIHGGVSMTMSLVRE
KFWVPKLRAQVKRVIHNCNKCKRYRIKPVLTPGSTASAQLPSFRTEFSEPFDVTGVDFAGPIYYRTKSEQGKAYIALFTC
AATRAVHLKLCPDLSAPNFQRALKEFVARRGCPQMIVSDNGKTFVATGKWLSVLKKDESLSNYLASQAIIWRFNMSRAPW
WGGFFERLVGVMKNALSKAVGRSLLNYCELEDALLDVETVMNNRPLVYQGEEFDEPVITPNLLLRGRPVPILEEDLEKLS
DAGNVTRRMRFIQRSKEDLKKRFTREYVRSLEERQQKHEERSGEQLKVPEKGRVVLLKEDVKNKAQWKIGRVVEKITGRD
GVVRGVKLKMGNGYVIERPLQLICDLEIGGDDPGIKLNPKAQVFIPRVGSRRQAKDSAKDNIKGIFLLEED
>BEL-6_DPu#LTR/Pao 320-5735 via tfasty with BEL-3_HM, 2 frameshifts and 1 stopcodon. [Daphnia pulex]
MANRAHLVSLRGGSRGQATTLVRRLEAVFANAELDAIHKLHELVTKHQALYERYQIIEDLDQQIYALTQADALEAYIAAV
DEVNIVYQDALSLYQHRINVIRREIEAADPDRRRNDAAAPGQQGNVPAHQVIVPARATSRPKITLPRFNGEILQWRQFWQ
AFQAEIHSDDTLANINKFNYLVGQLEPNVLGTVAGLTPSNDNYPVLVNLLTERFGSIPKITAAYMRTLYTLSKPEGHLKS
LRLFYDSLESYVRGLEALGKAPDTYGDLLVCILMDKLPIEIRKNVARQHDQDEWTLEQLRKALRGEIRVMEAGQSSFLPH
QQQPSSRNQQQYHGGKQTVNLFSGNSRPIKKFPCVFCSGDHAVTQCQQVTSVEETKKLVGNKKLCSNCFSPKHQSKDCQS
LASCRICGARHHTSLHSGPAKPSNPSTLPTAVSGNHCQTTALSSSVCDIYPFVFLKTAIIRAQSQQHEEKVNALFDEGAQ
RSWMTRDAAKRLGLRVKSKELLILSGFANSPTAPKYYDLVELVIVTIENQPIVVRAIVIDFLVNPLEDGYRKNLQDLAHL
KDLRLAHPFTGQETFHVDILIGADFYWQFIGDEAPIRGQGPTAVNSKLGYLVSGPLDSVRVSKPKQSINLHIQAVDCDDL
SFLWSLEKMGIFPHQENVKEAAEYADKCIEFEDGQYTARFPWKSEHQELPANFNMVQNMTRAIIKRLAKQPKMLAVFSRL
IEEQLNHNFIEKVPAEELAKNCHYIPYHYVKRESATTPIRIVYNCSCKGWNGVSFNDCVEAVAPLHNDQTQILINFRSHA
IGIVADVEKAFHHINLHKADRDFLRWFWLEDPTNPESPLAVYRFRVVPFGAKSSPFILNAVMMHHLKKSTSEIAADMLQS
VFVDNIITGCESPSAALNYFTEANRIMNEAHLPLQAWGFSDGAVEKSLAEGGSTDPSRLSKTLGLIWNRENDTLNVQPPH
LSAADVVTKRDVLKGNGAFYDPLGFYTPLGTSSKILIQDICIADLKIDEELSADHLKRWKEIVDSINGAVDQQLMSLPRS
YFGTVDAVQELHVFCDASRRAYGAVAYLCYGSxGAKDLLRSKAAFVMSKARITPIKDSQREGEREISIPEAELMAAYLGT
LLATTIIAALKKNGIRMKIFLWSDSQIIHFWISKPEGHPRQFITNRVKKIREFTQQSAATWRYLPSEYNPADILSRGATL
SEFKKSSLWRSGPHWLIDRKKLPIWSVSQFKTSTSVHLTVSSKKENAEEEIGNIIDPSIYSWEMLLRITGQIYRLLSNLK
KKDASRKSWNLQPLNALELQDAENVWIRFFQRKHLEEELKYLQRKKEAWRTSLVSQLDLFLDGSGIIRCKGRLQNAGISE
SAKHPVLIPKKTVLARLIITSVHQRIAHYGVDSTIAHLMQKYWIPSARAQVKAVCRNCPKCRRESGPSYRYPDPAPLPAD
RVQENYPFAVTGVDYTGAIQVTSKGERISVYILLFTCGVTCAIHLEVVEDMTAGSFINALKWFTGHHPIPRLIYSDNAST
FVNASNHLLELFNHRKVQEELAAIRILWKFIPKAASWYGGWWERLIALTKTALLKMVGRTILSFTQLQTVTTQIEAILND
RSLTKISTDENCIQPLTPSHLLYGQRLTTLPYHYDAEEELLDPSYGGPSQQPQVMTKAYLRSQNILRSFRRIWNSTYVPS
LREHHQKTKGPMKSTIRVGDVVQIESESKRANWKLAIIESVNRGGDGKVRSAELRTATGRTSRPINKLYPVEVSENSSPT
TQDANIQPRCIINESRSPSGRIPRQAARQASEKIKNIAYLESIIEE
>BEL-6_CQ#LTR/Pao 240-5650 [Culex quinquefasciatus]
MSEFYTPLKNPQNPDDSAFLGFAESTNGNGGNSARSTRTATKIVELASTVDDPELAKQIKSLARQRDQAMNKLLRIYSSV
NVPTPIDPAQVKGHATKLQAAYNEYSRFHSEIVALIPEEEMDTQERVYVRFEKYYDFTYSVIEKRIMRQPPAPAQVIIHQ
QPLKAPIPTFDGEYTKWPKFKAMFLELMAQSRDSETIKLYHLNKALVGAAEGALDAKTINEGNYERAWEILNEQFGNQRV
IVETHIRGLLSLKRMLSESHSELRTLLNECTNHVESLDYLKQPLTGVSELMTVHLLTAALDMTTRKLWEQTLKPGELPNY
AATIAFLKSQCQVLERCESACPPATTKLTTKQLVPASKVGQRSHAVTASSEEFTEKCDFCGYPHRNYQCNKLNGLTKLEK
DEKVRALGLCFNCLQRGHRLSSCPSTKTCQKCHKRHHTQLHDDGTHPEQETNIAVTEPPADDPGHNFLPTMAIPLAPQSP
GTNVTTTCSLSASAPKTVLLLTAVVLVTDRDNQAYQCRALLDSGSQANFITEAMANTLGLERKRANVPISGINNVKSLAR
DKVEVQFKSRCSEFCATLECLVTPRVTGTIPTTDIDISGWVLPDGIHLADPQFFKTNKVDMLIDAELFFALMKPGHITLD
DDLPELRNSHLGWLVTGAYRPARHNEAVQYSHVASLESVEEAIRKFWELEEVPQAATMSSEEQRCENHFTSTYSRDRTGR
FVVRLPLRENADDVDSCRNLALRRFFMLENRLQRNPSLKVQYVDFVREYLQLGHCREVNLADDNPNLKPYYLPHHAVLRP
GSSSTKCRVVFDASAKSAPTNLSLNDTLLIGPVVQSDIFSIMLRFRQHRYVFTADIQKMYRQIRIHPDDTHKQRIYWREQ
PNEPLKILELLTVTYGTASAPFQATRSLVQLANEEAENFPVAAKITRSDCYVDDVLSGAPTLNDAIGALNQLKEMLARGG
FPIHKWCSNSPEVLAHIPEEEREPLKPLADRHVNEVIKVLGLLWDPSADQLLIADCSKAATERDPPATKRIIYSEVAKHF
DPLGLFSPSILLGKLLVQGLWQCKLDWNTPISDNTQARWNELKCELPKLLQIKIPRRVTHDGAVYYELHGFGDASNVAYG
ANAYIQSVMKDGTVRSRLLATKTKVAPLHSVTIPRKELCAALLLVRLICKILDALTVPLRKVVLYSDSEIVLAWLKKHPY
QLETFVGNRVAQILALSRNFEWRYVRTHHNPADISSRGMLPGELMVCEPFWTGGEYINTAGVAQDLPDEILDEDLPELKA
NVVVMAALIQEPLEIFSKSSSYRRLQQTVAWIMRFFDNARKPKAERNYKRHLTVRELRRSTNVVVRVIQHVELGDEIQRV
RTNTPCKRIGELNPVLNDDGLLRVGGRLKHAKLSDEAKHQLILPNSHPVTHNLIRDMHDELLHVGPAGLLSAIRQRFWLI
RARSTIRQVTGSCVKCFRTNPSGISQLMGDLPKQRVTPSPVFSITGVDYAGPILVKQGTYRPKVVKAYIAVFVCMATKAI
HLELVSDLTTDAFLAALQRFVSRRGLVSEMHSDNATNFHGADNELHRLYEMFCNQAEIDRIVRFCQVKEIQWHFIPPDSP
EFGGLWEAAVKCTKTHLKRVIGNNTLNFEEMTTILCEIEAILNSRPLFAISGDPADPEVITPAHFLIGRPMIAVPEPSYQ
DLKIGRLSRWQHLQLLREQFWRAWSRDYLSSLQPRKKNRITTTNVRPGMIVLLQDKNRPPLHWKLGRITAVHPGSDNLVR
VVEVFSEGSTYTRSITKLSILPIEENQGQPDQRGKDDLNCPGE
>BEL-6_DYa#LTR/Pao 273-5474 via tfasty with BEL-3_DPer, 1 stopcodon. [Drosophila yakuba]
MPAESDKNRVTFLKRKANALFSRLQRLQTSLSNETLSGYDEPTLTVRLEQIDELQSAFNVLHTELEELDFDEIGSEMSES
FDEFIVEFKASVRAEIAKRNVHFAPHSTLAEGVVPHQCSGHQTQPRPRPMPLPPVQLPTFGGGYANWADFYSVFTSIIDS
HPDLSNIEKFQHLRSCLRDSALETIRSLEISNSNYEAALELLQKRFDNRRLVFQAHITEILGLKVVRNGSVASLRNCRTS
xRSHSALKGLGTTEQIAGCIIVQVLLQKLDAASQAKWEERLEDPVFANLIPSWESMAAFLEQRCRTLEAVDCAMATYAPG
VQVGRNRSTLVATTQNSLGCMLCHSAEHAIYYCPQFRDLAPVDRLREAKRLALCLNCLKAGHQLRQCSSSRCRTCGIRHH
TLLHLDGPPSSQPHVPVSSSSHTEPSAPLSTSSTLIAQDLGSDLVLLATATVLVQNRSGLFVPCRALLDSGSQLHLVTSR
FANQLQLKRSRSSGSVTGIGDSNFATDGFSVGIAMRSVTSDFSTSITAVIAPNITDRQPSFNVDIGDWKIPENLQLADPE
FHKAQRVDLLIGASLFYELLCVGQIKLLPGLPLLQKTRLGWVVSGGCARPCGSALIASRVPSSASKENSIDVELDSLLQR
FWEVENCPGPIVQATKEELDCEAHFVKNYTRLPAGDYSVRLPLKLHLDSLGDSYPQALRRFLSLERKLTKHPGLRVKYAA
FMKEYRDLGHMSPVPASEVSSCRYFLPHHCVMKEDSTTTKLRVVFDGSAATSTGYSLNDVLMAGPVIQPKLFHILIRFRS
HPVAVTGDICKMYRCVRVSQEDSYLQCIVWRDSPIDDLQVYKLDTVTYGTKPASFLSVRAMQQLSIDEQASFPIGSEILR
RDFYVDDLISGSGTVKDAISIMQQTAGILAKGKLKLRKWCSNIPLVLEGVPAEDKESFMKFEDGSDFTKTLGLAWDPASD
QLLFSFSAFQSPLRPCRRSVLSAIAKFYDPLGLVGPVITRCKIFLQQLCKEKLSWDESLPETHNTKWLDICRSFEIISHV
SFPRFVFSAESGLEVHGFCDASIDAYGACVYVVSKGNQSFSHLLCSKSRIAPLKTITVPKLELCGADLLAKIMREIVGLK
VFKGRYYCWCDSTVALSWIRDEPARFNIFVANRVAAIQELTDVTAWRYVPTALNPADILSRGSLPSELSESSLWAHGPAY
LTEPERDWPTAVCPDKPVLELRRSVFIVKSPYVDVIASSKFANSYPSLQRVFAYIYKFCNGIRHPGLTVAHIQEGTQMML
RLVQRAQLWEDMQSLKTLGRVSSSSPISSLSPFLDQFGLLRVGGRLRNSSLDFDGRHPKILPRSHPVTLAIISHYHESNL
HAGPRALLGAIRSQYWPIGGRKTVTKAVNRCIRCFRIKPRLIEHIMADLPKERLEGSHAFEVAGIDFCGPFFHKSDTRNK
PAVKCYVCVFICFATKAVHLELIKDLSTVAFLCGLKRFICTRRKPKQIWSDNATNFVGAKNELPELRRLFLSSEHQGSVQ
NFCLSETIDWRFIPPRSPHFGGLWEAAVKTAKHHFYRAVGTAVLTFDELRTLVCHISAVINSRPLVPISENPADLDVLTP
AHFLNGGPPSSFDEPDITGLNYNRLDSWQRISFLQQIFWSRWKEEYLTLLQQRSKWRTPKPGVAVDNVVLVKDENLPPMR
WPLARVMQLIPGRDGVARVAELRTASGVIRRAVNKLCLLPLEDSVGSQASNGGR
>BEL-7_DPu#LTR/Pao 466-8120 via tfasty with BEL-6_NV, 1 frameshift and 1 stopcodon. Pos 1114-3395 was assumed to be an insertion and deleted before translation. [Daphnia pulex]
MASVATLTSKRGGNRGAVTRLIAKLSDIINDAAMDRDRKIHELNKKLEDLHDKIKVVETLDSEIVELLPAADVEAEMSNA
GTTNAVAYDARDAAEFTLKTLMDEKAAEVAAAAAASAAAAAAANPNPPAPTITPTINVTAATDSSHLPKFNLPEFGGNIL
LWNAFWDVFEVEVHLKKSYSNATKFNFLNSRLSGDAKALLLGLVPTNDNYNVAIDLLLKKRFGQPAKIIMAHMRALVALP
KPGTDRASLRKFVDSLESHIRGLEALNKTPDSYGDLLVCILLDKLSADLRRNLARQSDATEWDLDILRKSLLKEIEILED
SESSISHSSALKPPKKTNALGSKAVYKRVSPSQALCPFCTGDHWPTDCDTAKTVEERYDIAKVKKLCFNCLRKSHQASSD
CPSKYRCRVCNRAHHTSLHKADPSRVTGATILSWSPPTSVVLSATDVGEQNSFVFLETAIAKVQSQFVKLDGNILVDKGA
QRTFITSKLTKLLNLPPLRRESLILFGFTSCRGVAEHYDVVQFSIIDRHGSPIVVQAIVIPHIVDPLSDPHRAELLSLPH
LKKLKLAHPVSTKSTFEVDILVGADTYWNIVGDQVIRGSGPTAVDSKIGYLISGRLQYSGEKVEQKTLGLHISVEEALDV
TKFWNLETLGIQPDLESTKTTEFYQKNSVEFRDGKYVAKLPWSENHPPLSSNLQVCQKRTRGTVNRLASKNPNGLKLYSK
IILEQLDRGFIEKVPSSEMSKPSHYIPHFGVFKESATTPLRIVYDFSCKTPTGVSLNDCLEVGPPLQNDMLAILLRFRAH
TIGLTADIEKAFHQVGLHEQDRDFVRFLWLKDPYDSKSDFxLYRFRVIPFGASSSPFILLSVIKKHLQNSSSLLADDINR
NIYVDNLISGCETSEEAVSYFSEANNVLKSAGLNLQSWGSNDDQLTVKAKSEGVGDKSQVTKVLGLDWEREEDRLHVPCV
KLSHLSHPQTSKREVLRGISATYDPLGFITPLTIPARMLIQGIWKLKLDWDDPIPFELIERWKGIATSIEDSKTSFNRSY
FKTGEIKELHVFVDASQLAYGAVAYFCNDDSSSFVFSKSRVAPLKTEKKLLTIPQTELMAAVIGTRVASSILSALLPLGL
KPNCYLWSDSQIVLYWIQKMGKIKCQFVHNRVETIRSFTRDTNASWNYCPTTCNPADLLSRGSTLRQFLSSDIWLTGPSW
LPKRSEWPSWEGNSEPAAVFHLSVITSASASNPPPSHDGGIEKILDISRYKFSYLIRVTAIVRRFIGNIKLKDKSRASWK
LGYITVSELQEAEKVWLLAVQKAYFTEEINYCTKPTVKRPALVSQLDLFIGQDGLLRCNGRLSNSQLKKDARHPILLPKN
STLSTLVIAAHHALMMHGGVKLTVASIRQRYWIPQIVQSVKKCLKKCVNCSRVRGPPYTAPNHAPLPVSRSSFSFPFTVT
GIDFTGAFTIRGPKEAPKVDRTVYILLFTCASTRAIHLEVVEDMTTLSFLDAFGCFVSHHSRPAVIMSDNAKTFEKGAKL
FQKIFRDPIVTRRLSDQQIEWRFIPKRAPWYGGFWERLIGLAKSALSKILGRTKPTLSAFRALVADAEVVLNDRPLENPS
SSVGDEESLSPAHLMYGRRLNTLPYSEETNEEKFDASYGDKPDELKKAVARHQTLLQHFEKRFLASYLPALREYHQATKK
SNPTVIKERDVVLVHDDKPRKEWKMAVVEKLIRSQDGQIRAADIRTANGKTNRPISKLYPLQVAEPSDDPAGSSDGPLSD
PAPSSPSRPTRKCAAQTNAAIKKIFEQEDAE
>BEL-7_DPer#LTR/Pao 557-5603 via tfasty with BEL-15_DWil, 6 frameshifts and 3 stopcodons. [Drosophila persimilis]
MITRAMSKXRATDEMDEDNVEMGKVEREXARGEASXMEGAGPGTSKEAQSHGVVNVMMEMWRQMQEGQRANAMQMQQFQM
EVLRMKQIQMEKTNILLRSLGISGRTTGEPGPQSTTAEPSVISDAVSSPRQPVPSQETQRKLYDLPEFDGAPEEWPMFNE
AFTMTTAQYRQNLLRLQKAIKGKARETVECLLIHSSNVSNILETLKKNVGRPEKLVKSQISRVREFPSSEGRLEQLVEFK
IKVQNxASFLEAANARQQLKNPTLMEELILKWPVQQRLEWARHSKQLGDEKSIRHLNLWLQGLAEEVQDAGLVDDQATFK
PKKEKSRLFHANDIGLVTTKACSACNGKHDLENCNSFAQLELEKKWQHERERKLCFNCLKYGHRSQKCRRNHQCGLDGCA
KRIHRLLHAESVNQPGEEVKFTGTATHEASSMILFKILPVNLHAKNKIVRCHAFLDEGSAVTLINESLADELGLHGPKES
LTLQWFGEKTSTELVSRFNIGISDERGGKVYALNGVRTIKDLRLPKQSVNVSELSSQYPHIKSIPVKGYRNARPEILIGL
DNLHLIAPKQMRSMGYVGPAIALTNLGWVAYGKCRGESGPMSNVKAVHLVKHNDEHIEQLVRDYITNSEMDVRIVKNHVE
GRETERSNRLLSTTTKRIGDRFETGLLWKVDDVVLPDSKKMAIKRQLSLERKFIHDPEYYKKYCDLMEAYEEKSYIRHIT
SNELEVDKPGKLRIVFDAXAEVDGVSLNSMLMTGPDGYQSLTDILMRFRQKPIGVCADIAEMFHQVIIRKEDRCAQRILW
RKNPGDEMKEYEMQVMTFGAKCSPASAQYVKNRNALEFRESYPDAVNGIIKNHYVDDLVHCFSSEESAVRVVKEIVDIHK
KGGFELRKFVSNSKFFNKVFGNEQVAEPITLDRDESSHYQKVLGMYWCTRSDEFGFSLSFNKIDASIFSESRIPSKREVS
RVVMSVFDTFGILAEYSLIAKLLLQSIWQKRTEWDQPIEGDDIKQWKCWLRSLSQACKIRIPRCYAEEFFGEPIELHIFC
DASESAYAAVGYWRIRTKSGWKSAFIMGKTKCAPMKLSTIPRLELXAAVLGTRLRKCILEGHDVNPKCVHMWSDSKTVLA
WIKSDHRKYKPYVGHRIEEILEATRLEDWHWVPTKDNPADFGTKLRSGTRETSWLRGPQFLQEDASPMESRIFRRATLEL
RSKFTLSINEMSSDGSVNIVFRELLERFSSFTRLMRVVAWVNRMCDRKTKRKVYLDVSEIEEAVLIVIRNVQDVAFHDER
VALLTGKSIEKNSKLWKLSPIIDGRGVIRMNGRINNACSVGEETRRPILMPQGHHVTGLIVRHYHELWKHQNENTIIAEI
RRKYYIPHCRQEVRRAARNCMTCKIQRASPKTPLMGQLPKDRLSPYVRPFSYVGIDYMGPFLVVRGRSTEKRWICIFTCL
TIRAIHLEIARDLTTDTCLRVLHKFVARRGRPVRIRSDNGTNLVGAERELKRELQDLDHIRIANELSTKQIEWLFNCPLS
PHAGGCWERLVRSVKRAIGHALMCNAENIVNSRPLTHIALDNPTADRLPITPNHFFFxKxQPTRKEMRIAQQISHSFWNK
WLNEYLPDLCRRTKWHHPVPXLAEMDTALICDKNLHRSQWKKGVILAVTPGRDGQVRSATVKTTAGVLHRPTCMLGKLDI
L
>BEL-5_CQ#LTR/Pao 401-5709 via tfasty with BEL6_AG, 2 frameshifts. [Culex quinquefasciatus]
MPPKILRTPAKKEEVDDGEDLETLVYLRDEKLLKLVRLKEKLAGLGLHERTATQINVNRRVLDASNAEFNSLHERIVRLD
AKKRKEHGDKLVEFETLFIEIDTMLEGWKQTLEILAGPSTAPVPAAQRPVVIQQSLPRLVPTFDGKYENWKRFKTMFRDV
VDRSNETPRMKLYRLEEALIGEAKGTLDEKTIEDGNYDGAWELLEERYEDNRRMVDIHIGGLLKVQKLHKESHAELRALV
ETVVGHVENLKYLRQEFTGVSTQFVVYLLAHALDSDTKKLWEATVKKGELPNYEETIKFLKNRVSVLERCDETSEPAAKQ
RDRNNPRPTNKPSYQKANAATTSSNPEIRCEMCGDSHLTFKCGTLAGLTVAQRSEKVRSKNLCLNCLRKGHSWKKCTSRY
SCGKCRQRHHTLLHDDSEQKFVQKPVNPQNVAPVANQPPVSQATGQEPPQSTSATCNHTQTVKTVMLLTALVHLLDDKDR
PVPCRLLLDNGSQVNFITEQLAKRLNTRRVAANVPICGIGAVKTYARESMTVQLRSRYNSFTVEVECLIVPKVTGMIPSA
RFSTSDWPIPANIQLADPNFHTPDRIDMLLGVSMFFKLLKSGQLELAKNLPELRETYLGWVVAGDVGDTVPDAQFSHTAT
LDDVSEAIERFWRVEDIDSATQVSTEQDECECEAFFRATHKRDPTGRYEVRLPFRPVVGNLDNNRSLALRRFLSLEKRLN
RDPDLKRQYGEFISEYESLGHCKSVEEADDSPGQGRYYMPHHAILRPSSSTTKLRVVFDASAKLSPSSVSLNEALQIGGT
VQNDLFSILLAFRKHPVAFTADLSKMYRQIRVAPADTPFQRIFWRNEPADFIRVLELTTVTYGTASAPFLATRCLVQLCE
DEGEKFPLAAKIVRDACYVDDILSGADSPDEAIECLKQLQGLLSRGGFPIHKWSSNESAVMDQIPEGEREKLIDLDGLTG
GVVKALGLYRSPGDDEFRFTANQADADADATKRRVLSEIGKFFDVLGLLSPVIIKAKILMQRVWLAGLSWDVLLEGGLAS
TWEQFQIALPFVRDIRIPRYVIGPGNIALELHGYSDASEVAYGAVIYVRSLFPSGKSPQMRLLCSKSKVAPTKQLDIHRL
ELLGCRLLSKLVVKVLAALKLPFRNVVLWSHSQVVLAWLKKPLDQLQSFVRNRVAEIRNETSNFIWLYVRTKDNPADLVS
RGMFPAELMVCEKWWKGPAYMQSEEYRVEPVEDLPDCEIPELRKVKMVTMLTCNSVEFPIFETCSSYRKLQRVMAYVLRF
TANCRKKNPAERVRQRYLTIPELRAAQDVIVLVIQHDALSKEIQQVAENDTAGRYQGLTPFLDKGLLRVGGRLQQSELPF
ETQHQLLLPKHRVTNLIVRAYHEEHLHAGPSALLATLRRRFWLIDGRSTVRSVTRSCVTCFHAKPRGSSQLMGRLPSCRV
TQALPFEEVGVDYAGPIFVKVGTRKPQLVKAYFAVFVCMSTKAVHLELVSDLTTEAFLAALQRFVSRRGVPRTIHSDNGT
NFKGAKAELHELFLLFNQRAFNDQIATYCQPKEITWSFIPPGAPNFGGLWEAAVKSTKYHLKRILKNAQLTFEQYATVLA
EVEAVLNSRPLFATSADPADPQVLTPGHFLIARPLTAIPEPVYEGTPTNRLSKWQHLQLLREQFWRTWKRDYLTSLQPRG
KDNKEKPNVRPGMVVLLEEKDAPPLQWKMGIIQQTYPGPDGFVRTADVKVGGTVVRRPITKLSVLPIEDNEQTADHGAIP
AGTSPQPGGR
>BEL-3_DPer#LTR/Pao 383-5642  [Drosophila persimilis]
MDNDPNTGAGGNIVVADSRLSLYKRKSQSLYDRLHRLGESFAGNKIDKLTAAEVEVRLDMLAEIREEFNKAHNELEALDQ
NEIGSELREIFDTLFISLKAELLAAVEVSQSHAAAHSTTLPSHSGHSTIIMAHKQRLPELKVPKFSGGYVEFSDFMAMFK
SVIEADADLSDIEKFQHLRSCLADAALDSVRSLELSGANYRAALDILNKRFNNKRLVFQAHIKKILGLKRVDSPSAKRLR
EFSDAVNLHMRALQTLGTAEEISGFMVINMLLQKLDSKTQTKWEEHTSSDAIPTAEEFFEFLQQRCQKMERLEYATATHA
SSDQVGKNHSYTQVKKTFVASNSSADPSVCVFCHSAGHGIYSCKIFGNLSPLLRHKEVKKLSLCFNCLKPGHRTRACNSG
KCRVCGGRHHSLLHFDSIQPTTQGCPGITPPDLAVQPDTLSVAQNSASSSSLPSSTSLAAQGLRSDVVLLATAVVLVKNR
SGVLVPCRAILDSGSQLHLVTSRFAQQLQLRRTQSSALVSGLGDTSVSTEGSTISICMHSRTSAYTTTLTALIAPTITDS
QPSMAVNVSDWRIPSNIQLADPAFFNPQRVDLLIGASVFYDLLCVGQIKLTDGLPLLQKTRLGWIVSGGGQKVSSSALSA
THNCPDSIAEMEARLDKTLRMFWEVENCVEAGSNTKEEDDCEAHFVSRLSRLPSGEYAVRLPLNNNTDRLGESYAQAYRR
FISLERKLERNPTLKERYSAFMREYIDLHHMHQVNPDSRSLCKYFLPHHCVLKEDSTTTKLRVVFDGSAATSTGYSLNDV
MMTGPVIQPALFNILIRFRTYPVALTGDICKMYRCVRVSPPDNLYQCILWRDSIESEVQVYTLDTVTYGTRAASFLAVRA
MHQLAIDEGESYPLGSAALRQEFYVDDLISGGNSVAQVMDKMHQTSALLSRGNFRLRKWCSSHQEVLEGTPEDDIEKFLK
FNDGSDIAKTLGLAWDPASDQLLFALSALDTTSKPSKRSVLSTIARFYDPLGLINPVIVRCKIFLQQLWRENLDWDESLP
SALHSTWMDLRNSLASISRISFPRLVLRSSVATEVHGFCDASLEAYGACVYVVSREAQSSSHVLCSKSRVAPLKTISIPK
LELSGAHLLAKIMQNVKDMGIFTGRFYCWSDSSTALSWIRDEPAKFQVFVANRVASIQELTAAMEWRYVPTSLNPADILS
RGSLPNHLIQSELWFHGPSFLLGSKDKWPVSPTNNIATSELRKRGLLITSPHADLTSGCKFANSFFRMQRTFAYMHKFIH
RLRHPGLTVSDIRQGTHLLIRHIQLANLWMDIKEIRRNGQVMKSSSISSLNPFIDHSGLLRVGGRLGNSSLGFDAQHPLI
LPKGHSVTFALIRYYHERNLHAGPRALLSKIRLEYWPIGGVKAVSRVVSRCVRCFRTRPRMVEHIMGDLPKERLEGSRAF
EVTGVDYCGPFFYRSEIRTRPPIKCYISVFICFTSKAIHMELVKDLTTASFLGALKRFTSTRGRPSQIWSDNATNFVGAK
NELLELKKLCLSEPHMKEVHESCLADSIDWRFIPPRSPHFGGLWEAAVKTAKYHLYRSVGPSVLSFDELRTLICQITAIV
NSRPLLSLSENPDDLDVLTPAHLLLGGPHEQILEPDLTKLNYNRLDGWQRVTQLQQIFWSRWREEYLTLLQERAKWRTPA
QNICKNDLVLVKDENLPPMRWPLARVVDVVSGKDGVCRVADLKTSSGNIRRAVTRLCLLPLKESVERLAPNGGS
>BEL-3_DBi#LTR/Pao 559-5013 via tfasty with BEL-9_DEl, 4 frameshifts and 3 stopcodons. [Drosophila biarmipes]
MTDIQLVSLRQQRNTIQRNIVNLKARIELQNDLAALECQSQILESYLQILQIQSQIERLDAADDGRQELEDVFIETKAII
ITRIGASKKDRPEDASFFNSSANCATGHHNRLPSLKLPKFDGKYGDYMKFITAFTSMVHDDASISAVDKFNYLLSCLSGP
ALSVVAPFQVSENNYPKALKQLKERYDKKVLIFIEHISSLFDIQVMKRSDPAALRCILDTVSALRESLLSLGTEADVMNA
ILIHLVLSKIDADSKLSYDRVQEYEVLPTWEDCYRSLSRHCQFLESNVTTNIxxEAKQSALCINCLRTGHLASRCPSRSR
CRVCQGLHHTILHRTAHPEQPTQIVSHTSQQQREPTHAVSMLSRHSRRALIPTAIVLIRDKFGIFQPARALLDSGSEINF
ISEELAKLLQLRFERQKYDISGIGDVRTQMRFSVSTTIRSRLSVNEWHLQFAVAKTISLNQPERFVDTSQWNIPSEIDLA
DPGFYMPHRIDLLISTQEFFDLLSNGKISLGPGLPCLVNTALGWIVGGKVSDIPQSQVVTCNMARSTELQGALKRFWLIE
EFDSHDQGFTAEEQECERHFVANTRFLTSGRVQVCLPFKENPHMLGKSFEIAKSRFLQNERRLSRNPLLKEMYExLNHMQ
LASDFDSQKTHYVIPHHGVLRSESTTTKLRAVFDASCKTTSNLSLNELLMIGPSIQQNLILTLLAFRLHRHALVADICKM
YRQFEVSPDDRMYQLVLWRESSAAPLELFQLNTVTYGMSCAPFLAIRSLKYIADNFSNQFPIGAAVLKEDMYVDDLLTGA
DSVEELHLKAAEVTSILSKAGLELAKWNTSKIEGNGAEFQFKVDTKDVTKTLGMSWQPKLDVFCFRYTLPTISVITKRSI
VSLVAHLYDLLGLVSPVVIRCKILVQELWMHRPNWDDPLPQELQSQWKRIEEDLHTRHQEVQDSSGWPQPVPNSQDTNEE
LELRKATVLTCTDSGSKEDIFDYVINKFSSYRRILRVIAFVLRVFNRIKVNRKMNIVDVIHTPATELQYAFKHIVSHIQQ
KTFFNEIQQLKENKILKPEFQKLNPFLAATDGANGSITLLRVGGRLAKAPISLDAKFPVLLPKNHCFTLKFVEYLHQQHM
HAGPKALIGILRLQAWIVNAREIVRKIVRRCTHCYHYKPRLMEQIMGSLPVDRFHSQRPFFVTGVDLCGPFSTSYRIRSK
VPYKTYMAVFICFSSKAIHIELISDLSTNNFILCLKRFVSRRGIPLRIYCDNATNFVGARSQLEDFKQQLFDEANTLNVQ
KFSSIVGFEFKFIPPRAPHFGGLWEAAVKSMKSLMMKNLGNTGLTYEELQTIAIESEAILNSRPMAPLSEDPNDGEALSP
AHLLIGSSLMSVPEPSIDESRPSYLTRWQRVTYLKQQFWELWRRDYLHTLQARSKWLKPNANIQIGQMVIIHEDNTPPQE
WILGRITDTHVGADGRVRVADIKVKNGTIRRPICKIAPLPEQIGA
>BEL-3_DYa#LTR/Pao 1091-6241  [Drosophila yakuba]
MSLETKNKSVLEELKSKLQSRVRTIRRLNERLETGSIPLLEEELKCRLENLNASISKANQLQEQIEDIDCSDEFGDELEE
LCIVTKAKIMSLLSALKVASVSEAPGSAAVAPTRARLPNLALPKFSGDYSEFKNFISLFETLVHKDASIPVIEKFNHLIS
CLSGEALGTVKAYQVTESNYEKALASLKKVYDNECLIFMNNISTLFSLPKISHQSASSLRNLIDTVSSIYGSLLSIGDDT
KISNAMLIYLVLNRVDPVTKQKWEEQLDYETLPLWADFEKMLNRRYQHLSAEESTKPKQDKIVSSKPHNRSSFSCSFSNS
KPQQTCSYCNAADHLLQNCSPFGRLSVMQRFEFVKSASLCINCLRKGHTVSKCKGKKCRACDRSHHILLHRYTVPENSLA
LPPPPETMSPTFNQDQPSTSHVMHATSLDRVILATSIVSVRTKNGEYVLARALLDSGSQTNFITEELANRLQIRREESCI
NLLGIGESNSQVKKKVHTVVKSRINGSEFSFDFWILKSISGYHPDQSVNVSDWKIPKNLPLADPYFYKSQKIDMLIGAES
FFELLAVGQIRQGPDYPTLQKTLLGWVVSGRYKSAVPKQVVNSFSCSEEPLVSIDSTLQKFWSLEEMPNPKKILSPEHKL
CEDHYRKTTQVLPSGRFEVRLPFKSDPNGLGNSFEVAKRRFLSLERRLSRDPNLKTMYLEFMEEYLALGHMSPTDNKIPS
TPHYVIPHQCVLRPQSTSTKLRVVFDASCKTSSQVALNDILMVGPTIQEELYSTLLRFRLHRYALTADVKKMYRQVMVNE
ADRKFQLIVWRRDPSESLRLYKLNTVTYGTGPAPFLAIRCLKRLSESAKCSFPRAADVIGSDFYVDDMLTGAACVEELKT
IKSEVSQVLQTAGFELTKWFSNSPEVTASESTVKSIPISDSESTKALGISWLPSEDAFKFKIDTSVMGLRATKRNILSVT
SKLFDPLGLLSPIVIKGKILLQELWLNKLDWDESIPMHLETAWDMLKSTLSQLDEISIPRFVHTDPLSPVQLHAFADASM
RAYGACVYIRSKTAEGFKLSLLTSKSKVAPLKTKTLPRLELCAAHLLADLCHRIKPLLKVPIERIVYWSDSEVTLHWIRS
HPSSLSTFVSNRVAEIQEWSGEATWRHVPTKQNPADIVSRGCDVDEIGQSIWFTGPPFLKDEEENWPKNAHFEPDEEVLR
QEARKTVVGLTAAVQTSDLLDVIEGFSSHLKLLRVFAYMFRFIRKCKDKSIVFEETLSPTEYNEAFHKIIEIVQKHEYQV
EIEKVRKGSKVGPSLQRLNPFIHEDTGTWCNFSLLRVGGRLANAPISYDAKFPLLLTKRSQFVQSYVRHLHHSNFHVGPR
ALVSILRQRIWTVNAQELCSQTVRSCVRCFKCKPRLMTQIMGNLPADRLRALRPFAICGVDFCGPVYTTLKIRGRPPYKS
YVALFVCFASKAVHLEIVSDLSTDSFLLAFQRFIGRRGCPQTVHCDNATNFVGASRHFLALRDRIEEQADAIREFASKSG
CEFAFTPPRAPHMGGLWEAGVKTAKHLLLRAVGSALLNAEELATVLVGIEATMNSRPLGALSQDPSDGEALTPGHLLTGG
PLIAAPALRTPDQAGLSCLRRWRLVSSVRQTFWRRWSREYVLGLQVRGKWHEEKANVEEGQLVVVAEDNLLPQQWLLGRI
VATHAGEDGKVRVVDLRRSDGAIFRRAIHKLAPLPIC
>BEL-4_DBi#LTR/Pao 374-5784 via tfasty with BEL-6_DPer, 1 frameshift. [Drosophila biarmipes]
MGKNESNGSDLAQQSSAPLAVVEPFADMYAMQMDLSSRLTQLIKNAKKDGQIKKTKSYYEFRLNKLNELSKQFYANHQAL
ILQQCPRSHPYFADAVEDNFEQAYSHIYCSFADEYETKFPVPIQVSGDQSINNTLVPSPVSTIQLPKLPVPHFSGNFADW
PSFYDSFTQLIHENQSLSNIQKFHFLKQALPHGRDQDINHMALTETNYAVAWNLVVKRYNNPRLQFMYNMNALYGIEPLS
KEIAVDLRNLLNLANVCISEFRRLHIAIDSCDHWLVHHLLTKLPISTTQAWEHSLGNNVEIPTFTKLEVFLHNRLVSIDL
IESRKPAVPVRSSIQSTNHRQTTRPSGNSTVRGHSFHSTLESGSIRCSLCQQNHVLRRCPDFLAKDCFARKVIVDRSKAC
INCLSASHSLSQCSSNRNCSQCGQRHHTLLHFPNAQQSPSLTPGVSRQHTSDSGRSADAVQNAPSTQLFSAVASHLNSTT
LLATALVRIVNNSTGQSALVRALIDHGSEGTLITENIVQALRLKRHPVRAEITGIGNTSHNQCRHSTDFTIISCSGSDFN
AYVSSAFILRSLTGHLPKQNVNIKSCKHLQGLSFADPNFIKSGRIDLLIGVDIIPQLMLPDIRKGTVAEPIAQNTQLGWI
VFGPAEAAQTTSISIRCNLANLNNMVQRFFELDQVSTTRQLNAEERWCEDHFQQTHIRQPNGKYLVRLPLKTLFDPTQVI
GRSRQIALNRFHALERKLNHRPDFSQQYVSTIQEYFDLKQIKEVKGSEEEHTRINAQRQLSISACTVPHHAVIKDDSLTT
KMRVVYDASCKTSNGRSLNDILCTGPALQNDLGGVILNWRLHRYVFVADITKMYRCIDMHEEDAQYQRIFWRDEKGLIKE
YFLTTVTFGTASAPFTAIRVIHQIASDERERYPLAEHVLKKEIYVDDVQTGHETIDGALKIRNDVIAALQSAGMELKKWA
SNHPDILESIPTTDLSNSSIFEIDNKDSIKTLGLYWHPNKDGFGFNLKFSLNPIFTKRSILSTVARLFDPLGYLAPVIIA
AKILLKEVWSFRIERKDEPPASLDWDDPLPDQLAERWRQLIQELPDIEEIHIPRWLGFDLRHVSTLQLHMFCDGSSMAYA
ACAYLRASCTDGSVQVNLLAARSRVTPVKPLTIPRVELSGALLCTQLADWIVNQLQASHHTISVHYWSDAMIVLYWISGD
PRRWKTFVSNRIGAILEASSPSQWRHVLTQENPADCATRGLTPSQLKHHTLWWNGPHWLQLSEEHWPVNPVQSPKSELIS
GEQSLKHIGAHICIEVQPFIESYSSYNKLLFVTAYVKRFIYNTRHKKADRLTGPIQVSEFQQALFALVRMVQQEVYSEEL
SRLRSNKFLSKHNKLSQLSPFLDDEGLMRVKGRLKNALQLSMSQRTPIILPKAHHLTILVIRNAHHNTLHGGVQLTLATI
HQVFWIVNGKQAVKRILRQCVTCFKHRPSPSSQLMGDLPAHRVNPPKRAFEATGVDYTGAIEIKSSRFRGHTCYKAYIAV
FICLASKAIHLEAVTGMSAQHFLWALQRFIGRRGFCQHLYSDCGTNFISSDKSLKLWTNEFYKGIEETVVPELTRRNIQW
HFNPPHSPNFGGLWESNVKAVKTHLYRSFNGIRMTYEQLSTILVQIEACLNSRPLCPLTSDLDDLQALTPAHFLIGDSMM
SLPEPSLKDSSLNTEFLNGQRMFRLFWRKWSADWLHLQARPKWRHETDNLQRNDMIIIKDDRTGPSDWKLGRIIDLHPGA
DGLVRVATIKTSTGIYKRSVSKICRLPLPRFTEESSPSTQPMHL
>BEL-3_HM#LTR/Pao 459-5627   [Hydra magnipapillata]
MSSIAGKRRVRTITVTAIKNIFERANECMTNFSQDSNSFEELSSFKEVLIEKYNKVKAIDDDLINLIEDDEELLNEENLA
NEFSLFFKKNIKIIEKFNNNIYKSINESQSSSLKSFSNNNIKLPPLKLSTFSGKPEEWQTFYENFECAIHNNNDLSPIQK
LNYLRNLLDGKALKTISGLALTNDNYHTSLELLKERFNDKQLLISTHMKSLLSLERVQSINNISLLRRIHDNIEVQIRSL
ENLGIDSTMYGPLLIPIIMQKIPEELNLIIARNFDSCDYWDIKYVLKSLKAELQAREKAHSGRECNFDPSTAEVLHSSAS
FKPQYELKCIFCSKSHKSESCKTVTNINSRRNILRDKRRCFNCLKSGHMSKDCRSRISCYECSGKHHVSMCFKKFPLHID
DSKESNNKLTSVATTEALKSKNVLLQTAMVTVKNKDKTLRCRLLFDSCSQLSYISPSLRKKLFLPTLGRKQLNIKTFGNQ
SQTQXLEMVKLSILTLKNSLIPITCFVKPICAPLSGQYIEEAVDSFEHLKGINLADSNVDCKSLEVDVLIGADYYWSFFN
GKVIRANTGPVALQSSVGYILSGNVNASSGKDCCVFSTHTLKVETEFINEIPQFNENIKKFWELENSGVEDNIFDHFKSN
IYFDNKECRYTVKLPFKNNHALLSDNYSLCIKRLNVILNKLKNDSELLNEYNKIIIEQLNSGVIEKVNNYDSSIGEVHYL
PHRPVCRKDKTTTKVRIVFDASSTLSGPSLNDCINAGPSLATPLFFILLRFRANKYAFIADIEKAFLQIALDKNDRNYLR
LIWFDDIYNINNSNLFSSALATYRICRVPFGVTSSPFLLNATLIYHAERYCLNDNNISSKLLQSLHIDDLISSCVTIEEG
VLFFNKCKDILKEGGFNLRKFESNSSAFEKQINGDNYERQTNTRVLGLKWNKTEDSIIYSFEDLLNVASIVPTKREVMSF
IASIYDPIGLINPVVVTCKNLFQRICVSKLGWNENLYGDLLSTWNLILSDFKSVFQIAVPRWYMSPGLGNINNVKFELHG
FSDASVKSFGCCVYLRFFNANFSRASLIASKSRVAPLGKNTMPRLELSATLLLAKLLASIYDQLISIYNISNIVYWTDST
ICLHWIFNTNNTYEQFVQNRLNKIRELTLICNWNYIESFRNPADIISRGSSLKKLNNNELWFYGPNFLNDINIKWPYYEH
VNHSNETLEVLCNVVHVKVNVNLDFINVDKFSDFRYLLRVTSWILRFINNAKDKKKNIFKTGLITAEEIDNAKRLWIKFS
QINLIDENKFKQLRKDLRLFVSDGIYRCRGRIEHADLEYDTKFPIFIFNNCYFAKLLILHFHKLVKHNGVKETINALRSQ
YWIPCCRQLAKSVIRECTTCRRIEGRPYSYPPAPPLPESRLNSDFAFKCIALDYAGPLYIKDIYGDCTLNKAWIFLFTCC
SSRSILLDLVADCSSRSCIMGIRRFIGRRGVPEIIYSDNGSQFVSTETQYFAANHSIKWKFNAPSAPWWGGMFERLVRMT
KRCLKKALKNSKSSYEEVRTLLSEIEMVLNNRPLTYLYNNQGDEALTPNHLVFGHKLKLESSLSACNDIEQDVHIRNSML
SNTLNHFRSRFKSEYLTELREYHKSKRSNGCNGIRVNDIVLIESDNCKRQLWKLARVEELLYSNDGVVRVAKVCYKQENG
SSCLITRPINKLYPTEYSDNEKIVTVAFINEKNIPLLVNGGR
>GB:AAA33420 endonuclease (Gypsy_Ty3-element) [Magnaporthe grisea]
MILPAELTVGGQNLPTYALTDCGAEGKCFLDQGWAEERQLQMYPLRNPFDIEVFDGRTAESGKCTHYVRGQLRIKDHIQK
NALFFVTQLAHYPIVLGMPWLKQHDPTIGFASHVITFDSDYCRRHCNMPDKPEKVKALHAVPKKSRPQYQADRPPSLREM
DIAPISLQAASMYARRRSCRLYAVTLKQIDEVLAADPQNRNGPTLPETIREFADVFSPQEAEKLPPHRPSDHHIPLIEGK
TPPFGPLYAMSREELIALKEWLTAELKKGFIRPSSSSVASPVLFVKKQGGGLRFCVDYRALNNITVKDRYPLPLVRETLN
NLAGMKFFSKIDIVSAFNNIRIKKGEEYLTAFRTRFGLYESLVMPFGLTGAPATFQRYINDSLREYLDVFCTAYLDDILI
YSRTRTEHEEHLKLVLEALRKAGLYANAAKCEFFVTETKFLGLLVGVEGVKMDPEKITAVLDWQTPKKLTDVQAFLGFGN
FYRRFIRDFSKIVAPLTRLTKKDVAFEWNSACETAFRLLKRKFTEAPVLAHFDWEKDVILETDASDYVSAGILSQYGDDG
ILRPVAFFSKKHTATECNYEIYDKELLAIIRCFEEWRPELEGTSSPVQIITDHRNLEYFTTTKMLNRRQARWAEFLSRFN
FRITYRPGKQGAKPDALTRRSEDMPEEGDERLKHQTQVVLKEHNLPARPTRLQPIIRQNKPLLPRHLIELLDAGYESDPI
TQSALEALRTGADRHPKLQLAECEERSGYLYYRNRLYVPDSNNLKAEILRRCHDSPVAGHPGKAKTYDLLSREYYWPGML
HYVSLWVKKCQTCRRINPSREGHQGLLRPLPTPERSWQHLSMDFITHLPQSNGHDAILVVVDRLTKMRHFVPCKGTCNAE
DTANLYLHHVWKLHGLPLTIVSDRGTQFVSKFWKHLTTRLKIDSLLSTAHHPETDGQTERFNASLEQYLRAYVAYLQDDW
ESWLPLAEFTANSHKSETTGTSPFYATYGFHPRMGFEPVPLNQPLPAQRDAEKLAARMEAILEQARAEMTAAQARYEEQA
NRHRTPARRLTVGQYVWLDARNIQTARPQKKLDWKNLGPFRISEVISPYAYRLDLPSSMRVHPVFNINRLKPADVEPLPG
QQPAPPPHLEVEGEREYEVEEILDSFWETRGRGGRRLKYIVRWAGYSEPTTEPADYLENAAQLVKNFHRRYPHKPGPRP
>GB:AAA33419 homolog of retroviral gag genes (Gypsy_Ty3-element) [Magnaporthe grisea]
VPAMPASLQPPILTDSTEELIEHLQRHPEQWVSYISDSYQKLQLLHDSNVRLNSCLEMQEAETQRARAETDRVRDKAQAD
ILAMAMEKASAITSRDAAFAELEKTRSELKEVRTVTLPTVHITTPAPTTNTPVEPLMVTPMGTTPPPASEHPASARLSER
LPDPDKFTGARSDLRRFATQIRGKMTSNKDRFPNPESRLIYIAGRLSGKAYNLILPKMVGGTPQFGDYTDLLQYLEEAFG
DPDHVQNAQNKLYALKQRNVDFAEYLSEFQRLSLEGEMPEDALPPLLFQGISEELQDMLLHNPAPSRQYHEFTRHLQSLD
NRYRQHQQYKNRQTRTPRAAAPPARAAPRTQPDIPRAAPKPNAELPLNDPMDLSSQRRHNRKENMLCYRCGSQEHFVAKC
PEPDTRRTRLHQAGIERSRSRSRSPRQIQTKLPKNPRRGSDASRSSSRSSKNGARLG
>GB:BAA78625 Pol (Gypsy_Ty3-element) [Tricholoma nauseosum]
MPDSDDDDEDPEEVEEGDRIFYTAICSSHEVCATSNISQRLAEAFHKNNAAKSSTNSLLPHLHEFEDVFSKESFDSLPAR
KPWDHAIELTPGATPSSCKVYPLSPEEQRQLDQFIDEHLASGRIRPSKSPMASPFFFVKKKDGSLRPVQDYRRLNNITVK
NRYPLPLISELVNQLHGARYFTKLDVRWGYNNVRIKEGDEWKAAFRTNRGLFELLVMFFGLTNSPATFQTMMNDIFHDLI
LEGVVCIYLDDILIFTRMVEEHRRITRLVLERLRRYKLYLHQDKCEFERTKIEYLGLIISEGQVEMDPIKVNRVTAWPTP
TNKKEVQSFLGFINFYRRFIKDFSHHARLLFDLTGKEAWRWDNAQQEAFEKLKEMVTSAPILTFADDLRPFRVEADSSDF
AMGAVLSQQSPEDQKWHPVAFYSKSLSAVERNYEIHDKEMLAIMRALEEWRHFLEGAQHKVEIWTDHKNLEYFMTAKKLN
RRQARWSLYLSRFDFSLHHRPGRSMGKTDALSRRADHGDGSGDNQNIVLLQPDLFTIRALEGIAPQGEERDILRDICHAN
CSGLHEDVVARAVKELRKGSTLSLRAAEWAEKEDLLYFRDRIYVPNDPDLRRRIISQHHDSQIAGHPGRWKTLELTSRNY
WWPQMSRLIGQYCRTCDLCLCTKVPRRKPIGELHPLPVPESRWDVVSVDFVVELPESNGFDAVMCTVDSVGKRAHFIPTH
TTVSALGAARLYLHHVWKLHGLPGAFLSDRGPQFMAEFTRELYRLLGIKLLASTAYHPQTDGQTERVNQELEQYIRLFVN
ERQDDWDDLLPLAEFGYNNHVHASTQQTPFLLDTGRHPRMGFEPRQTPSHIETVNEFTERMRDSLEEARAALAKAKDDMA
RFYNQRHSPTPQYKVGDRVYLDSSDISTTRPSKKLAHRFLGPFPIVKCVGTHAYRLRLPASMSRLHPVFHVVKLLPAPPD
LFPGRHSHPPPPPTVIEGEPQYEVKSILDSRLHRGKLQYLVHWKGYGYEENSWVEESDINAPRLIKEFHRWHTAAPRRIQ
VTDFGRIRFRMHWGDAS
>GB:AAC64918 envelope-element (Ty1_Copia-like) [Glycine max]
TLIARSLLGQNKFDRCFTRPSTFLIQTHIFVVISFSAFPNSSQRFTKPFQRLCFSMATSPKDTSSPGSPSVPSSPSSTKA
PSNQEQPEFHIQPIQMIPGQAPVPEKLVPKRQQGVKISENPSIATSPREVDTEMDKKIRSIVSSILKNASVPDADKDVPT
SSTPNAEVLSSSSKEESTEEEEQATEETPAPRAPEPAPGDLIDLEEVESDEEPIANKLAPGIAERLQSRKGKTPITRSGR
IKTMAQKKSTPITPTTSRWSKVAIPSKKRKEFSSSDSDDDVELDVPDIKRAKKSGKKVPGNVPDAPLDNISFHSIGNVER
WKFVYQRRLALERELGRDALDCKEIMDLIKAAGLLKTVTKLGDCYESLVREFIVNIPSDITNRKSDEYQKVFVRGKCVRF
SPAVINKYLGRPTEGVVDIAVSEHQIAKEITAKQVQHWPKKGKL
>GB:AAC39019 Gag  (Gypsy_Ty3-element) [Dictyostelium discoideum]
MSSTTTPSKKAIRKAKVSSTAKRATEVTTASDDAITVQVKSKKTLRPTEVDDEIYSTESTDVSDVEVREKVPKKSKTNSI
EAKTIDALKNAATAVIFMNLFTIHCSQNGVEPTLKTIMDNGAASNELFQLLQPTHNESVKNNDKIEGETLKKLIHRNFRS
KTLVPFKTDYEAANTKVVEAINHRNCYSAQDVIKNIEAIMSYHNVINPVYLIHGTAEVQLEYLRSILDNNILALLKMVVP
DWLQTDVAIKLNTQTDITECREAITELVLNNADKFSRRRPSDSASNNDEKFPLKKNHATPNHNSHNRNSFDAQADKIRAA
ILPEIRKDSKVDLKKIRSSFIVYRQSKGYCLNCGKSNHSTSTCRIDPVDAKANPGPSAKKQQ
>GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) [Drosophila buzzatii]
WPRRGDAAERSPGGESSSCTKDWCHGTKDTHPKSIQSVPGVWPRRTPSCQVPQQGTGLLLAMWTHRRAHRGLLPIGKRPA
VPAVQGGAGAMPNSPKTLIGSLHDEGHQLTAIVAIGAEQQKATIDTGASSSFISERLAKRLHGGGVVRATRRRIRLANGS
CSEVNSQLDLKIRLGSRQMEVPLLVLPGVIDDLVLGCDFLAGMGTPWNVAAWRSTIEPRNPQRSGRREAKLSVAIASGEI
GHETPLDATQVDQKLIHADPEVDAFLRHELEKFQHVKGTTKITEHRITMQDTRPIKQRYFPKNPKMQAEINKQVDELLVK
GCIEPSKSPHTRTYSNGQGRKNGKWRLCVDFRQLNSRSIKDAYPLPRVHHILDQLREARYITSLDLKDGYWQIPMEKSSR
PLTAFTVPGKGLFQWKVMPFGLHSAPATFQRALDQVIGPDMMPHAFAYLDDIIVIGRTRQEHMDNLREVFRRLRAANLRI
NIDKCDFFKKELKYLGHKVTENGIRTDPEKVAAIAQLKPPTNVKELRQYVGVASWYRRYVPDFASTVHPLNALLKKGVKW
EWTEEHQRAFETVKAKLTESPVLACPDFSKPFCLQTDASNYGLGAILTQTSEEGERVISYASRTLNSAERNYSATEKECL
AIIWGIRKLRPYLEGYHFIVITDHMALKWLNSIESPSGRIARWALELQQYDFEVRYRKGKQNVVADALSRQPLEEDACCL
AKSRETPDGTACRWLQRLRQDMRKAPQKFADYREEAGNIYRHIPHQAGHEDVAAWKLCVSTDRRKQVLKENHDAVTAGHL
GSRKTIARVAARYYWPGMYRDVRNYVQRCEVCQRYKPSQLQAAGQMLTQVPEEPWATVCADFVGPLPRSKHGNTMLLVFI
DRFSKWTEMVPLRSANTAALQKAFRERILARFGAPKVLITDNGTQFTSRAFKNFLDELGVRHQLTAPYTPQENPTERANR
TVKTMIAQFAGSDQRCWDEALPELTLAVNSSVSASTGYTAAFITQGREPRLPKTMFDAQTLGTGQEAQSPIERAAKMREV
LEIVRRNLERAAQDQARITICGGGSGSRLLGTKCGRRNATCPMPRTDLQRSWHRDTEGHIRWSSLYRRSSAGISSDAEKR
TRTAHVADLKPWRGETGESQSGAEQAA
>Helitron-6_NVi_hel#RC/Helitron 2-3551 Incomplete N-term, via genewise with Helibat1_hel, 2 frameshifts and 1 intron (2144:2296) [Nasonia vitripennis]
RNCKPKNIIMSITRNDELDKNRYNEVAMIFVGEDGHPPIERDIVIYSTHDKPISIPLISKHTDPMTYPLIYPNGGYKWMP
NMKCKFGKNNISNLQFYNYRLSVRNEFNPYLNLGKVSQQAIIDAFVKVESSRLYFIRKNQNILRSDCYKGVMDYLHKKGD
AENIKIGKMFILPSNFTGSPRHLKQNYIDSMSLVNRYGKPDLFLTMTCNPNWKEITENLQKYENSIDRPDIVAKVFQQKV
KEFKELVIKDGILEKSIAYTYVIEFQKRGLPHMHMLLFLDENYKLDTPEKVDNLINAEIPNKNFYPRLYSIVKQFMIHGP
CGVINKNSPSMDKNTEKCTKNYNNETSFQATGYPIYKRRNDGIKINYKNKNSQRTADNRFVVPYNPFLLLKFNCHINVEV
CSTVQCIKYLFKYCYKGHDCAFVEIRNADINFEEDNNNKNQTLSTEEDEYKYDEINQYLNTRYLSPPEAMYRLLEYCLHE
ISHVIKRLAIHDKDQQYVYFEKGKEEKIKNKIIETTLTAFFKLNQTDLDARNYLYSDIPIHYTFDEKLKTWNKRKKNNKP
ILSRMYLVNPKDRERYFIRLLLLHVKGPTSFEDLRTVNGVLYPTFYEAAIAKQLVNEDEEWDKCLQEAIQIQFPTVLCEL
FAFICIFHNPINARELYEKYKSNFYHPKYEECAGENIALNAIEKVMQANGLTLSDFNLPNITMNIEEFDNATFLVEKVIL
KESLNYKQDKCIFIDGPGGSGKSYLLNVLIDYLKLHNIPFLCVAWTGIAANLLSNGRTVHTTFKLPLNINDCTTCNVKPN
SVNGRKLKDVQIIIWDEISMTSKFAFEAVDRLFQDLCDVTVIFGGKSMLVSGDFRQTLPVVRHGSRIEVIENSVKYSYLW
TNFRRMTLNQNLRVSNNDDNFKQWLLNVGDGKRLNLYEEENELFEIPVNMISKGDIITEIFGNNIKMNDETLKDKVILAP
KNNDVIDINNKILDIMEGHFVEYLSIDTAEDDNGENLDVMLPTEFLNSLTPNGLPPHKLKLKIGAIVILLRNLNINEGLC
NGTRLIVKQFLKYSIQAEILNGKNIGKLVLIPRIPSKEELPFNMRRKQFPIRLGFALTINKSQGQSYNKVGVYLPSPVFS
HGQLYVALSRVKDRQ
>Helitron-4_DRh#RC/Helitron 26-3866 Fragment via tfasty with Helitron-2_AAe_hel, 3 frameshifts and 1 stopcodon.  [Drosophila rhopaloa]
QLGAPTAFMTLSANETGWTDLLKLLYRLKNHGANVSDEFLSKMSYVQKGELVNEDAVTCAIYFNKLVNCLLKILQSKRDN
PFGKYRVKHYFKRIEFQHRGSPHAHILLWLENAPDNLLSNSTGVIDMVDKLVSVSESEASGNIKLITPYKKSDPGKKDNC
RFGAPFLPLAxYNPTITLMPMKDTDSDFDAVSFKEYKEKYQLLRNNLENFDYDGFDDFYAKNNIVSDEHYYNIIRAGITR
PKLFYRRTPAEKWHNPFNPFVFHCLQSNMDFQIIQDEYACAAYVVEYVNKHNRGISNLQRQIIQVMDENPEFDIVDITKK
LSVDLLHAVEMPAQEAAWYLLREPMAKASVTTVYIPTIYPTERQRIRKTLKELQELDDDCTNVWKENWFDRLIQFVANYT
MNTKGEYYQRKIPRIVRYRNYEMANNFNDYRREMVLLHIPFRSEDNDVLAENKFIQIYEDNKKLILERRKEFESNLDIEK
TLEICRALGREDEEEEQQLRGEANVIFEADPYERLVNDPHSAINADIQYATFNKLGAIAKKKENLMETQLFNELMRSANC
EQKELLMHIISHLQTPNDSPFVIKLMMEIYNRFSDTDGYCNAYITCASTGKAAVAIDGTTVHTALKISISKLLPLSSEML
HLYRSLFRYIRVLIIDEISMIGAELLAKIDLRLKQITGNHNQDFGGIDVILIGDLRQAPPVRATLIYKPIRTLMVGPHLW
RSLKFYQLTQVMRQANSQFSSILTKIGNGDILEPSELQLIESRFYTKEDALRLCPNGVRLFHTNHAVDTYNNEILQGDPD
KVISTATDIITGTNTAEQEATCRVRLHKKSVIDTGGLPYQVTFVKGKYYLVTTNIDVTDGIVNGAVGKLVHLDFNEDNNI
CRVWLEFCGSPKVGRKVRKKNARLAIQSRVSPLAVPIELRTSTIPLTTDKKVTVKRKHFPIISACALTIHKSQGGTFDQI
VYEYDKTHPQQLVYVALSRVTSIEGLFIVTPHDDPTQFRFHHNRRQATSTSSLLAEFKRLSLNTLKTRAQVIVDVISNKK
GVSLFTFNVQSLKNHYADLDDAVILKSNILLLTETWLANGQQCNIPHFNCIVQFKRDTVRAGGVAIYQNMSDITRIVTPN
MEMISKNIQDFSVRHTSVADLCAAQCVMENGITVVMAVIYVSPNQKIVDIQEFIHRVLLEYTEEGSRLLRRYNTNLYEIP
LILAGDFNINFSDKKSEPLTQFLLEEFDSKINNDPTMSTTRFNTTIDAVFSRYLDKIESQMFVSYFSYHKPIVTTIELTD
>GB:BAA84459 orf5 (gypsy_Ty3-element) [Oryza sativa]gi|5902446|dbj|BAA84459.1| orf5 [Oryza sativa (japonica cultivar-group)] (RIRE2) (Gypsy_Ty3-family)
MCFVDRKIKSQAQFDVLVGKIKRLEGARDEVANVATPLVQAMFLNNSGPSALDATEIFDKLRVAPDVYFKNIKKAGSMGA
SMALAMTKSLYPRIEIDAIDGFADGTSEEAALDLISNAQNAADKIASDVVDQFRNTDLQPSSNNSDDERTDSD
>GB:AAA70219 unknown protein (orf 2) (Gypsy_Ty3-element) [Drosophila melanogaster]
MLIDTDAAKNYIRPVKELKNVMPVASPFSVSSIHGSTEIKHKCLMKVFKHISPFFLLDSLNAFDAIIGLDLLTQAGVKLN
LAEDSLEYQGIAEKLHYFSCPSVNFTDVNDIVVPDSVKKEFKDTIIRRKKAFSTTNEALPFNTAVTATIRTVDNEPVYSR
AYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILA
NLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVII
FSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLAS
YYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASG
IGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKS
YIDQHNAKVFYKPGKENFVADALSRQNLNALQNEPQSDAATIHSELSLTYTVETTDKPLNCFRNQIILEAARFPLKRNLV
LFRSKSRHLISFTDKSWLLKTLKEVVNPDVVNAIHCDLPTLASFQHDLIAHFPATQFRHCKNVVLDITDKNEQIEIVTAE
HNRAHRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFSTDRKLFLTC
IDKFSKYAIVQPVVSRTIVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERF
HSTLAEIARCLKLDKKTNDTVELILRATIEYNKTVHSVTRERPIEVVHPGAHERCLEIKARLVKAQQDSIGRNNPSRQNR
VFEVGERVFVKNNKRLGNKLTPLCTEQKVQADLGTSVLIKGRVVHKDNLK
>GB:AAA98434 gag3 (gypsy_Ty3-element) [Saccharomyces cerevisiae]
LFKRTIEKPNLATPHPSMSFMDQIPGGGNYPKLPVECLPNFPIQPSLTFRGRNDSHKLKNFISEIMLNMSMISWPNDASR
IVYCRRHLLNPAAQWANDFVQEQGILEITFDTFIQGLYQHFYKPPDINKIFNAITQLSEAKLGIERLNQRFRKIWDRMPP
DFMTEKAAIMTYTRLLTKETYNIVRMHKPETLKDAMEEAYQTTALTERFFPGFELDADGDTIIGATTHLQEEYDSDYDSE
DNLTQNGYVHTVRTRRSYNKPMSNHRNRRNNNPSREECIKNRLCFYCKKEGHRLNECRARKASSNRS
>GB:AAC02672 polyprotein (Ty1_Copia-element) [Arabidopsis arenosa]
MTGSTSPASASETIAVSTSTLLNINMTNVTRLTDSNFVMWSRQVHALLDGYDLAGYVDGSVPIPPPTRTTDDGVVTTNND
YTLWKRQDKLVYSALLGAISLSVQPLLSKANTSAEVWETLSSTFANPSWAHVQQLRQQLKQWTKGTKSVVTYFQGFTTRF
DHLALLGKAPEREEQIELILGGLPEDYKTVVDQIESRENPPALTEVLEKLINHEVKLAAKAEATSSVPITANAVNYRGNN
NNNNSRSNGRNNSRGNTSWQNNQSTTNRQQYTPRPYQGKCQICSVHGHSARRCPQLQQHAGSYASNQSSSSSYAPWQPRA
NMVSATPYNSGNWLLDSGATHHLTSDLNNLALHQPYNGGEEVTIADGSGLPISHSGSALLPTPTRSLDLKDVLYVPDIQK
NLISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGKTKNELYEWPVNSSIATSMFASPTPKTDLPSWHARLGHPSLPI
LKTLISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSNTIASSHPLEYLYTDVWTSPITSIDNYKYYLVIVDHYTRYTWL
YPLRQKSQVRETFITFTALVENKFKSKIGTLYSDNGGEFIALRSFLASHGISHMTTPPHTPELNGISERKHRHIVETGLT
LLSTASMSKEYWSYAFTTAVYLINRMLTPVLGNESPYMKLFGQPPNYLKLRVFGCLCFPWLRPYTAHKLDNRSMPCVLLG
YSLSQSAYLCLDRATGRVYTSRHVQFAESIFPFSTTSPSVTPPSDPPLSQDTRPISVPILARPLTTAPPSSPSCSAPHRS
PSQPGILSPSAPFQPSPPSSPTSPITSPSLSEESHVGHNQETGPTGSSPPVSPQPQSEQSTSPRSTSPQPNSPHTQHSPR
SITPALTPSPSPSPPPNPNPPPPIQHTMRTRSKNNIVKPNPKFANLATKPTPLKPIIPKTVAEALLDPNWRQAMCDEINA
QTRNGTFDLVPPAPNQNVIGCKWVFTLKYLPNGVLDRYKARLVAKGFHQQYGHDFKETFSPVIKSTTVRSVLHVAVSKGW
SIRQIDVNNAFLQGTLSDEVYVMQPPGFVDKDNPHHVCRLHKALYGLKQAPRAWYQELRSYLLTQGFVNSIADTSLFTLR
HKRTILYVLVYVDDMLITGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNMLAAH
PVLTPMSPTPKLSLTSGTPLDKPSEYRAVLGSLQYLSFTRPDIAYAVNRLSQYMHCPTDLHWQAAKRILRYLAGTPSHGI
FIRADTPLKLHAYSDADWAGDTDNYNSTNAYILYLGSTPISWSSKKQNGVARSSTEAEYRAVANATSEIRWVCSLLTELG
ITLSSPPVVYCDNVGATYLSANPVFDSRMK
>GB:AAB61714 ORF1 putative transposase (Mariner_Tc1-element) [Homo sapiens]
MASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRKLGLLRQTVSQVVNAKEKFLKEIKSATPVNTRMIRKRNSLIA
DMEKVLVVWIEDQTSHNIPLSQSLIQSKALTLFNSMKAERGEEAAEEKLEASRGWFMRFKERSRLHNIKVQGEAASADGE
AAASYPEDLAKIIDEGGYTKQQIFNVDETAFYWKKMPSRTFIAREEKSMPGFKASKDRLTLLLGANAAGDFKLKPMLIYH
SENPRALKNYAKSTLPVLYKWNNKAWMTAHLFTAWFTEYFKPTVETYCSEKKISFKILLLIDNAPGHPRALMEMYKEINV
VFMPANTTSILQPMDQGVISTFKSYYLRNTFRKAIAAIDSDSSDGSGQSKLKTFWKGFTILDAIKNIRDSWEEVKISTLT
GVWKKLIPTLMDDFEGFKTSVEEVTADVVEIARELELEVEPEDVTELLQSHDKT
>GB:AAC34904 reverse transcriptase (LINE-element) [Limulus polyphemus]
GIDGYMFGYARASGSTSVSIQSSSMTEGETNERATPRASDSSSVSIQSSCVTEGECLPPTDNCNPSVENQLPCVTEGRFE
RVGSLVTVRLPFRKVACDLCSKEFLTYSKFAVHQANFHNSETQACCTYCGKSDGNHHSIACHVPKCPWRRTVTFAANLSN
FLCDLCNDSFKTKSGLSQHKRHKHPCSRNAERILSLGVRTPSARPRQVVWSEEETRTLREVEVVYSGQKNINVLCAGHLP
GKTSKQVSDKRRDLHRIRSSNVHGTPTTQSRGDPVEQVEEYEELDWEGMHPFPDPDSKFCSYLDQLRDQKGLTEPVWQEI
EIVAQEWVENLAHVQSSWNHERTTKQVPENNTPARRPFKRRLHRVERYKRFQRMYDLQRKRLAEEILDGREAVTCNLKKE
EIKDHYDQVYGVSNDRVSLDDCPRPPGANNTDLLKPFTPTEVMDSLQGMKNGAPGPDKITLPFLQKRLKNGIHVSLANVF
NLWQFSGRIPECMKSNRSVLIPKGKSNLRDVRNWRPITISSIVLRLYTRILARRLERAVQINPRQRGFVPQAGCRDNIFL
LQSAMRRAKRKGTLALGLLDLSKAFDTVGHKHLLTSLERFAVHPHFVRIVEDMYSGCSTSFRVGSQSTRPIVLMRGVKQG
DPMSPILFNIALDPLLRQLEEESRGFMFREGQAPVSSLAYADDMALLAKDHASLQSMLGTVDKFCSGNGLGLNIAKSAGL
LIRGANKTFTVNDCPSWLVNGETLPMIGPEQTYRYLGASICPWTGINSGPVKPTLEKWIANITESPLKPHQRVDILCKYA
LPRLFYQLELGTLNFKELKELDSMVKQAVKRWCHLPACTADGLLYSRHRDGGLAVVKLESLVPCLKIKTNLRLVHSTDPV
ISSLAESDGLVGAIEGIAQKAGLPIPTPDQRSGTYHSNWRDMERRSWERLALHGQGVELFKGSRSANHWLPRPVGMKPHH
WVKCLAMRANVYPTKRGLSRGNLSKNKDSAKCRGCTSMRETLCHLSGQCPKLKSMRIRRHNKICEHLIAEASFKGWKVLQ
EPTLVTDNGERRRPDLIFHRDDKAVVVDVTVRYEISKDTLREAYASKVRRYGCLTEQIKDLTGATSVVFHGFPMGARGAW
FPESSDVMADLNIRSKYFEEFLCRRTILYTLDLLWKSNNEQYLERLAP
>GB:AAC52010 mariner transposase (Mariner_Tc1-element) [Homo sapiens]
MEMMLDKKQIRAIFLFEFKMGRKAAETTRNINNAFGPGTANERTVQWWFKKFCKGDESLEDEERSGRPSEVDNDQLRAII
EADPLTTTREVAEELNVDHSTVVRHLKQIGKVKKLDKWVPHELSENQKNRRFEVSSSLILRNNNEPFLDRIVTCDEKWIL
YDNRRRPAQWLDREEAPKHFPKPNLHQKKVMVTVWWSAAGLIHYSFLNPGETITSEKYAQQIDEMHRKLQRLQPALVNRK
GPILLHDNARPHVAQPTLQKLNELGYEVLPHPPYSPDLSPTDYHFFKHLDNFLQGKRFHNQQDAENAFQEFVESRSTDFY
ATGINKLISRWQKCVDCNGSYFD
>GB:AAC46948 mariner transposase (Mariner_Tc1-element) [Chrysoperla plorabunda]
MEKKEFRVLIKYCFLKGKNTVEAKTWLDNEFPDSAPGKSTIIDWYAKFKRGEMSTEDGERSGRPKEVVTDENIKKIHKMI
LNDRKMKLIEIAEALKISKERVGHIIHQYLDMRKLCAKWVPRELTFDQKQQRVDDSERCLQLLTRNTPEFLRRYVTMDET
WLHHYTPEFNRQSAEWTATGEPSPKRGKTQKSAGKVMASVFWDAHGIIFIDYLEKGKTINSDYYMALLERLKVEIAAKRP
HMKKKKVLFHQDNAPCHKSLRTMAKIHELGFELLPHPPYSPDLAPSDFFLFSDLKRMLAGKKFGCNEEVIAETEAYFEAK
PKEYYQNGIKKLEGRYNRCIALEGNYVE
>GB:CAA56857 planarian mariner-8 gene (Mariner_Tc1-element) [Girardia tigrina]
MEISEIRILMKYEFHRGATTRQAVGNINSVYPTQAVTQTTVAHWFKRFRSGDFDLSNQPRGRPEIKVDNDALKADVEADS
SQSALELASKFGVAKSTILIHLKQINKVKKLDKWVPHELKDEHKQQRLDACLSLLSRNKADPFLHRIVTCDEKWIMYDNR
KRSSQWLDPDEPPKHCPKRKVHQKKLMVTVWWSSYGVIHYDFMVPGTSITSDVYCSQLDDMMEKLAIKQAKMFNRLTPIL
LYDNARPHSAKNTVAKRQQLGLETLRHPPYSPDLAPTDYHFFQSLDNFLSGKNFTSSGAVKTAFQEFIDSRESVFYTKGL
NVLPLKWQQCVDNMGGYFD
>GB:AAA70222 I factor (ORF2) (LINE-element) [Drosophila melanogaster]
MAPSWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHNTYTHIDLTLCSPILAPHAKWKILNDLHGSDHFPIITTLF
PTTNPQKFYRPFFKLKEANWEQFNALTHQTNKKYPTSHNVNKEAALINRIILYSANLSIPQTSPNTHPYRVPWWNKHLDQ
LRKEKQLAWKKLNRTITVDNILDYRRKNAIFRYELKKRKKEASSSFTSTIHPTTPSSKIWANIRRFCGLNPAKQIHAITN
PVNNETTLASNEIANIFAQHFSDLSGDWNFSEEFRNNKYRNNIHLYTPSPIAQTIEENITYLELSSALQTLKGCAPGLNR
ISYQMIKNSSHTTKNRITKLFNEIFNSHIPQAYKTSLIIPILKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVT
YNNLINDKQFGFKKGKSTSDCLLYVDYLITKSKMHTSLVTLDFSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSNRK
ITVRVGPHTSSPLPLFNGIPQGSPISVILFLIAFNKLSNIISLHKEIKFNAYADDFFLIINFNKNTNTNFNLDNLFDDIE
NWCSYSGASLSLSKCQHLHICRKRHCTCKISCNNFQIPSVTSLKILGITLNNKYKWNTHINLLLPKLHNKLNIIKCLSSL
KFNCNTHTLLNVAKATIIAKLEYGLFLYGHAPKSILNKIKTPFNSAIRLALGAYRSTPINNLLYESNTPPLEMKRDLQIA
KLSQNLILSKNTPIHKFLKPKKANKKKTSTIDRTIKLSLELNLPYKPIKLHKNKPPWTLPNLIDTSLRIHKKEQTSPDQY
RKLYEHTKNNLKTHNFIFTDGSKINYTISFAITTETDVLKYGILPPYSSVLTSETIAILEAIELTKNRRGKFIICSDSLS
AVDSIQNTNNNSFYPSRIRSLITQHAPKIKIMWIPGHSGIKGNELADQAAKSASSMPLILTPNINTTDIKKHLKADLATK
QKEHIINCSPWYQSINTNTSHPCDYLKQSHPNWTRLDQIKIIRLRLGHTNITHQHYLNPNSIPTCPFCQGDISLNHIFNS
CPSLLQTKQDIFNNTNPLDLLSKPNPDNIQKLILFLKKTKLYHKI
>GB:CAA72990 open reading frame 2 (Ty1_Copia-element) [Brassica oleracea]
MLDCKPSSVPMMPNLKLSKVDGDLIEDREMYRRLVGRLMYLTITRPDITFAVNKLCQFSSAPRTSHLGAVYKVLQYIKGT
VGQGLFYSAHSDLTLKGFADADWAACVDSRRSTTGFTMFVGDSLISWRSKKQPTVSRSSAEAEYRALALASCEMMWLCIL
LRELHVASSSVPVLFSDSTAAIYIATNPVFHERTKHIELDCHTVREKIDKGLLKTLHVRTEDQVADILTKPLFPYQFEHL
KSKMCIRNIFCTS
>GB:CAA26446 ORF2 (Ty1_Copia-element) [Drosophila melanogaster]
KSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPS
CHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQDDQSNAE
>GB:AAB65093 Lian-Aa1 retrotransposon protein (LINE-element) [Aedes aegypti]
MQNGAAQVALVQEPYFRRGNFYLGNLVDPVFATFSKLETANSRSMPRACVLVNKAIVATLISELSTRDVCAVTIDVSVGD
LNRKYVYCSVYLPHDEPSPTDDFKRVVVHCVTKGLPLIVGSDANAHHIIWGSSDINLRGSSLMEYLSSTDLGLLNIGNRP
TFMVSNREEVLDITLCSNRISHELTNWHVSDEESLSDHRYIFFEHSNVTAQTLRFMNPRSTNWELYIELVATKFHGYSPS
IENPSDLDDAVDTTTSYIMEAFEEACPLRSVKTTRGTPWWNSDLTRLRKQCRRSWNRRRSAGSESFKSARKAYKKALPSA
ERSGWKTLCTNVSSLSEVSRLNKILAKSKDFQVNEIRLPNGDFTSSDEEVLECLFNTHFPGCVDIASTDEPNVFSCSYES
LASARSIVTTESIQWALNSFAPFKSPGADGIYPVLLQKGFDFIQHVLKKLLASSFATGYIPKSWRDITVMFIPKGGRASY
EEAKSFRPISLTSFLLKCLERIIDHHIRDVYLANMPLHVNQHAYQSGKSTVTLLHKVVYDIEKAFAQKQSCLGVFLDIEG
AFDNVSFDAILEAARNHGLPTMITNWIHQMLKNRHLFSTLRQAAIRKLSVCGCPQGGVLSPLLWNLVADTLLRQLNNCGF
PTYGFADEYLALIVGMCISTLFDLMQSALQVVESWCRQYGLSVNPNKTSIVLFTERRNRDGIRPLRLFGTEINVTDQVKY
VGVILDSKLLWTAHIDFRVKKACMAFGQCRQTFGKTWGLKPKYIKWIYTTVVRSILAYGCVWWQKGEVRTIQSKLGHLHR
MCLMAMSGAFSTTPTAALEAIFDVAPLHIYLKQEALSCSYRLWVLDLLEKNPVNRRSTHTSLFPLLVNWDKIVLAPSDLT
IACNLPYRTFTTQFPSREEWTSGYLERSISNNIVCYTDGSLLEGRAGAGVYSRELRLNQFYSLGRNCTVFQAEIFALMCG
VQSALQQRVMGKVIYFCSDSQAAIKALASANSRSKLVIACRTQIEELNSVNSVNLVWVPGHSSIAGNELADELARDGASH
DFIGPEPAIPISKCWVKLQINSWAATQHKQYWNSLESCRQTKLYITEPSPRVAKYLTNLSKQNCSLLVRALTGHCRLNYH
MANIQRADSFVCDSCDSDYGTSYHLICNCPVFSQMRFQLLGKHLLSETEFRSLNLQDILLFLTRCVNEL
>GB:BAA88337 ORF2 (LINE-element) [Platemys spixii]
MGDGDLSPXVSGEVGHXXEAEGGGCNRGGLLIRTEKVGQSASYLXCLYTNARSLGNKQEELEVLAQSRNYDMIXXTETWW
NNSHDWNTVMDGYKLFRKDRQGRKGGGVALYVREHYDXSELQCETGDTPVESLWVKLRSKNNKGDVVVGVCYRXPDQEDE
VDEAFFSQLGKVSSSQDLILMGDFNHPDICWKSNTAEHKQSRKFLXXVADNFLVQVLEQPTRGRAXLDLLLTNREDLVGE
VEVGXNLGSSDHEMVEFRILTKGRKENSRIRTMDFRKADFDSLRELMGRIPWEANMRGKGIQGXWLYFKETLLRAQEQTI
PMCRKNSKYGRRPAWLNXEXFGELKHKKEAYKKWKLGQMTREXYKNTARTCRXEIRKAKAQLELQLARDVKGNKKGFYRY
VSNKXKXRESVGPLQNGGGNLVTXDVEKAEVLNAFFASVFTDKVSSQTTALGGTXWGGGEXPSVLKEQVQDYLERLDXHK
SMGXDAXHPRVLRELADVIXEPLAIIFEXSWRLGEVPDDWKKANIVPIFKKGKKEDPGNYRPVSLTSXPGKIMEQVLKES
ILRHLEERKVIRXSQHGFTKGKSCLTNLIAFYEEVTGSVDVGKAVDVIYLDFSKAFDTVSHSILISKLKKYGLDEWTIKW
IENWLXHRAQRVVINGSMSSWQPVTSGVPQGSVLGPVLFNIFINDLEDGVDCTLSKFADDTKLGGVVDTLEGRDRIQKDL
NKLEDWAKRNLMRFNKDKCRVLHLGWKNPMHSYRLGTDELGSSSAEKDLGVTVDKKLDMSQQCALVAKKANGILGCISKS
IASRSREVIIXLYSALVRPHLEYCVQFWAPHYKKDVXKLERVQRRATKMIRGLEHKTYEERLKELGLFSLQKRRMRGDLI
AAFNYLKGGSREDGARLFSVVADDRTRSNGLKLQWGRSRLDIRKKFFTRRVVKHWNGLPREVVASPSLEVFKLRLDKTLA
GMI
>GB:CAA35586 ORF1 for putative RNA binding protein (LINE-element) [Drosophila melanogaster]
MNQNDIRSQRQCEQDERRLSLQRNNAYFSFVSPQIGDRAPSPSTNSKLLPSANDRPRSCSPSLPASAHKSWSEETASPTP
LLSQRQTTVPGNCNTAITSAVTSLATATTSTSSAAQLIIAVPAVNNSAALTVCNNNNARKEESKQKQKSISTVQTGMDRY
IQIKRKLSPQNNKAGNQPKINRTNNGNENSAVNNSNRYAILADSATEQPNEKTVGEPKKTRPPPIFIREQSTNALVNKLV
ALIGDSKFHIIPLKKGNIHEIKLQIQTEADHRIVTKYLNDAGKNYYTYQLKSCKGLQVVLKGIEATVTPAEIIEALKAKN
FSAKTAINILNKDKVPQPLFKIELEPELQALKKNEVHPIYNLQYLLHRRITVEEPHKRINPVQCTNCQEYGHTKAYCTLK
SVCVVCSEPHTTANCPKNKDDKSVKKCSNCGEKHTANYRGCVVYKELKSRLNKRIATAHTYNKVNFYSPQPIFQPPLTVP
STTPTISFASALKSGLEVPAPPTRTAHSEHTPTNIQQTQQSGIEAMMLSLQQSMKDFMTFMQNTLQELMKNQNILIQLLV
SSKSP
>CER11_CE#LTR/Pao 973-7435 via tfasty with CER8_CE_9759-15554, 1 frameshift and 1 stopcodons. [Caenorhabditis elegans]
MMEHLGVDPNPLHPIDQYTLLAANKILQRTKRYAEALENLRHYVDDKFQEPVLRGSPLKDVYHEQVQEHLARLQPKSLLT
EAKRDITMLERELLNHGFPITTSDPQELVLTPYEYETSEDGTSSSDVDDLASFDGAFDNLRETMGSDHVQIDHQNPNPRV
TIPSAILSPPTNGSSHLNYRTVSQPSPLTVHRDSALGSLSRQPSLADELQDERHQHRLSQIRLRALEDTFIARRQADEEA
EELGRQQLSQYREMRAARERRLEEMRSQPSPPQAPAPAPRRPHTVHSGAEPTTPDLVPAPALTGYPTPEQLLPQAMLQAM
TEMGRLISQLQRDQTQARREQTSFMNECREHLRPPAEGSIGQSAYSPDDEGEEQSQRGSSPPVQPIPDSRSPSGVINFET
NAKNLPKFDGTGNFRAFRNGFDTVVLDDPRLPSVTKCNLLRNHLVGNAQQCISHDDDPLVAYQTTMDMLESVYGKGDTQR
GLLERFRKLKFHQSNPEQMKLDLTSHQLLVQRLVSTGLSATDDRITMGLIGKLPISFRDKVTEFYTDMDDHPSAIAFYQR
IRKHINSFENGLIAASLQPLHVAPVNEIPSHYVKGSVHVVDQKQQPKKGELRHPTSSSGGQKERDTSAFYIDPATGAQLG
GHLRPGKRGVHLTLIARTFPLPDETSKKPCAACGGSHSPTRCHLTSQAFREATAQKGLCANCCGKHAIEQCKSHFTxSYC
DGHHHSGGCPKKEYYRDLANYPPGQRPLSSYFVTSLPTREGKPQHLPLNHCELISHLKAKQVGLISSGSAKLSLQGFHEA
STSISKIFKISLKNKHSSESVGFLIAGYSDLPATAFRAPAFSDQDAHHLDSLEIDHLSISSQRTFDGKRIDMILGNDVLT
CLHGDRHTRRHQLPSRRVVDDTRIGYIVHSVPSLILYTSDERKWVFNDQNGLTHSLMLANMVLDHQYVEDPELKLHWSIE
QLWKFENLGIEPIPLVDETKKSTQDLLAEFQQNACYTNGVLEVALPFNGNEEKLKNNYAIAYKRLCSLHETLTKGKNLIT
KYDRVIKDQLLAGIIELVTPEMKPDSPIEYFMPHRAVIKESSNTTKLRVVLDASSPIGKDLSLNDCLHAGTNLLTPLYGI
LLRSRCYRYIIVADIEKAFHQVRLQVKHRSVTQFLWLADPSQPANADNVVRYRFTRIPFGVASSPFLLGAAIHHFLGRNP
HRLNNEIRDNLYVDNCMLGTDDFTKVMPTAMAAKSIFRKMNMNLREFVTNCDGIMQHIRAEDRAESRDIKLLGCMWNSNE
TVDTYSIKIAVLDIDHPTKREVASKLAETFDPLGLVTPILVQFKRLIQQLWIAGVSWKDRIPIELLPLWRNLQKSFVDKS
IHVERRLTFVNEEVIDCQLIIFTDASQDIYAAAAYAHFTYKKWPPVTRLITSKSKIKEVSAANYTIPKLELLGILCGSNL
AVTLSKELRLPISSIKLFTDSSCALYWILSAKNTRAWVHNRVQKYHENCARMSECGLSTSLHHVPTKENPADLATRGMST
TELQKSLFWFRGPRFLANPPESWPQKIEGTITCPAEFQDLVYKEIIDTSTEKKKSKPLIEKAIPAAPKATESVLHLTTGP
FKSFIPFDYSNSLTKLSNIIYRTLNSVCKMFPGKSWDSEIMVEFKNSESALHRRKLVRKLIILHHYRESEALGLKLPADL
DYYVDSHGFYLVKKQVTSHALPQEANEPVILFKDHPLATLVMRETHVINGHSSELYTVSAAKTMFWIPHIKVLAKSVVSN
CVDCKKVHGLPFRYPNSKTLPEKRTSPSKPFATAGLDYMGPIEYLKDDGVTIGKSYVLVYTCLVTRGAMLRVLPDATTET
YLMGLRSIFHCVGSPTDIYSDNAAIFKLGASMLNDDILSGDELSDSLTSYLASQQINFFYITPLSPWQGGVYERIVGLLK
HQLYKVSSVEKLSMFSLQYLVSGAQAMINSRPLTPHARSPNDMIALRPIDFQLPGVMLDIPFVHPTGNGRGAEERARAHL
AQLETALNRLWQIWTLGYLFHLRKAKHRNKKCTSIKPAVGQVVLIDTNHVNRHKWPLGVILQVHESKRDHEVRTATVKAH
GKRCLRSVCQLIPLEVQASEDFTSADPPSEGDLVELEEHDCDDPTSDIPTQAYFEHSRSTARTLLRVSPRVSEI
>CER9_CE#LTR/Pao 5387-12551 via tfasty with CER11_CE, 1 frameshift and 1 stopcodon. [Caenorhabditis elegans]
MTLGSSRSPSPGRRRHASEGGTAVPPTPANCGKPTKKRTRGQVSLATRIVGPLKRRINHKVDAAKRILAETEAKMEILLN
MPQDQLVSSEDSTYLDALLIRLQTILVALEGMRDLISDKFRDTEMMVDPNRHQHHQEVLDYLEKSSTARFVDHLTHDIQQ
LETEMRSRNIPITHFDPSLLATTDVETGATTEDDANDEERRDIEATIEDHAQNNGPSDHRVISDLRTPHGSTPSTGTPRL
SSPGMVWDNEGLSLHDELQIANLLDPANPQRSPMAPAAPTSSAAAPTQSAAAPPSSATAPMSSAAAYHLHGQHGQQLGAP
AHTNGGTTHRQQPLEQRIQTTTKGVLQGKREQLKQGPTETPLLVQHAPTTTGPGTRITPQRVLNAPALQTHQVINSQVGY
PSAGAHEYSAFHPLLQYAPPRGEDTLTHRLLAAIEAIATSQSQMQSELISQGRSVHVLTDRMEATEKLIVEPKILNTTVA
EETSRPAMPQPTHETAQQQQTTGSEYEYEFDSDDDNNQQPLPPQPRTEIRYVEVKNNGSHDTQNLLKYLGKYDGNSNIDS
FLTDFKESVMENENLNQANKFMILKTHLLGKARDCISRDHVTAKALEKTITSLKSVFGKDENKTSLLAQIHAIGFPQSDV
REMRRAIAKHSILVEQLVNSGLAANDERTFTPLTSRLPPAIRTRVTQFWGSKGENATFQEIFDYVTTCVDDMARESILAL
RHLPTAESETEVGPLGIPYSGQINHANATTQNQGNPNGKKTSISLADKPVYKREDHPKTYYDSNTGESLPGYNAPGKQGP
VLRLLPRTFPLYEGTTKKTCKACKGSHHTLRCTLSSKDFRQALNASRLCPICTGYHSVEQCRCLMKCILCQGLHHTGGCT
LKEYYRDLKNYPPTAPPPQQFFRASREGRHLGQNQQxAVLGRQGDKCTEAPVNSCFAASLKCFRFFSYPQYSFSNIRYPH
YQPAPNLSSNVFDSAHFEITSTNIYNGRRIDMILGNDLLAWLNANPETKKHILPSGRLVEITDFGHIVHPVPDKTIYQNH
TQIEVTSETFMHASALINGPNPEDPNLALTLQVEQQWKLENIGIEAQPLNDHTTTSAKDLQASFENTLRYTPEGILEVAF
PLNGNEVRLKDNYEVAVKRLHATVNALKNSKNPNLLKQYDEIFKTQEASGIIESVTPNMKLETKYNYNMPHRAVIKESSN
TTKVRVVYDASSHAVGQLSLNDVVHAGANMVIPLFGILIRSRFIKLMIVGDLEKAFHQVQVQPEFRNLTLFLWLTDLNKP
ITRDNICTKRFVRLPFGMSCSPNLLASTIVHFLVHNPDELNNDILDNLYVDNILIGTNDLALIMNRITRLKQIFSHMKMN
IREFVVNHDESMEKIDPKDRVSARTIKLLGMKWNSSPDADTYTIKIADVQTIMHPTKRDVASKMAETFDPLGLISPIQVS
MKRLIQKLWSHEVNWKDPIPKHLLDDWQAIQASFIDRTITVPRRLTTDFEYKDIQLLISSDASQDIYAAAAYVYFSYGDD
RPPVISLITSKNKIKPSRETNWTIPKLELLGIEIGSNLASSIVKELRCKVTNIRLFTDSSCALYWILSKKNTRVWVANRI
DQIHLNQTRMSECGIDTSIHHCPTKDNPADIATRGMSTSELQNSDLWFNGPEFLKQKPEDWPCKIEGTFTCPAEFQAVVF
AEILDPKTKKTKKPLMEKAEKPPASETVLHILELPSKFESIISFRYTNSLRKLMLVTYRTLLAISKMRKGKVPTSWILEK
FMMAPNLLEKRRVARHYIFLQHYKECAEQGLTFPSSLRYYVAPDGLYRVLKQAKSPTLPAEANEPILVHPKHPLANLLML
ETHEINGHLPEQYTRAALRTRYWLPNDSSVARSVISKCIQCKKVHGLPFPYPHSMTLPESRTTPSTPFQNAGLDYMGPVE
YSKDDGVSTGKAYVLIYTCFTTRATILRVVSDGSTERFIMALKTIFHQVGVPKMVYSDNAPAFILGGSILNDDISTWEHH
SDPLTSFMATQSIHFFRITPVSPWQGGMYERIVGLVKHQILKVCGADRFDYFTLSYIVSSAQAMVNNRPLMQHSRQPDDM
IAIRPCDFLNPGVMIETPPTEFTPSAPSGVPEQRVRAHLASLEETIELLWKYWSLGYIINLRQNHHRNVRCADLKPTVGQ
VVLVNTNLVKRQNWPLGVIVQVNRSERTDEIRTAVVKCKGKLYKRSVCQLIPLEVQSSDMDSLPDTENREDGQECLMDAG
MTVQHPSAPPLTIPSAALFDSPDEHYSPELFPRETCPNVTEATENPSPKIQNNTMIPLVPNTSTIQNARLDLHERVGEVD
NFENPDLDQVHVDSKDEVEYQDPSTTEELPTAIPGRSRPILPRRVKKPVYYNYFLHTTTAVTSTFSTP
>CER13_CE#LTR/Pao 229-7974 [Caenorhabditis elegans]
MSSVYRAQIGINRRRLKDALDTVETFDDVEDVQDGSEKEIFDDIAEIADTAYLIRSSTDKIKSYDKQWKKLISRDSKEAE
VMKDYKQRLGDYDADIQEGSIKFNQLKEKYQSFVALHQKKSPATTEYPAFSGEMSISRDPSLSPQTPVIETDPITITIPR
ETRVNPTVISSTIDPLIHHQSVVNNSIQSNQGFTTSLPVKLPAIPMPSFDGTYTQYHSFMELFSSLIDEQPISDVAKFHY
LKAALQGEAKLIVKHLPLTSANYQVARELLHEQYGDVMRTRHHLQRELQHLPSMAQIRNTSQLQEFWTTASAIFQQWKNI
EPSCDNSTNANIIMAKLPKRYVEKLFTGDNARRTYTASELFRQISEYIRWDSLVVTICNENSSNDKRTTTMMAHGQQHQH
RHFQKSSNHTNAGSQGRVSHPCVFCASPTEFHRYEQCSMYPTAEDRHRRARELKMCFRCLRVDHKSRQCTRFRPCFHCRE
NHHSAICQLRNRVTMPGSQSGQNSNMRSTTPNGSNGSFRSNFNTQPQQLQQQPVRQQHTPYQRQDARAQPPMRSYQRNEN
GSLANRRVQFGNTAAVTSQVFQGISANEDSEETDREEDITVTFNAASFPTEAQQFEIDEHEEAPSVGDQLATGPAKTLES
LPIAMMGKEIFVENSSGQLIPTTVFFDSGSDRSYITEKLMKDLRLDPMDSKRIHIQTFASPTVKTIKANRYMVTIHAENH
KIAVPLTEIDTIAKSITIGKIDEPTVGNLFKNASAIVPRTHEEPGILIGLDSMSQLLGNTESRRLPNGTTAHMTECGIMI
TGIEKTPTNVLEENSAFANDEELFHFTAKSTSSPIGILSANPEEENAALRALLERFWNLEHTMVMDNPRTSDEEIAHQFF
EATTTRTEDGRYQCKWPFKSDTWSLPDNRYLAYHRLLSTLKRLQKDKEMYLKYDAIIKDQLDRGFIEIVQDEHKPTNTKV
HYLSHHPVFKLSSVSTKLRIVYDASARANKNSQSLNDALHTGEKLLPKLNGVLMRIRVPPILVSSDIEKAFLMLELHPQD
RDCCRFLWQPPGQTQPVCYRFLRVPFGVKSSPFLLNASIKKHLRSEQSELAKKIALNIYVDNVFMGVANAKEGVQFYRES
KKIFAKVQMNLTQYESNSKELNEMIGIIEGKAADQKVNLKLLGTSWNTNKDEIGVNIAPPITSNLSKRQILQSLASTYEP
LGIISPVVLKGKLFFQKLWNNSGNWDSPLSEDEIKEWKAIETSCCGEAITINRKYFSTPNTSEHQFEIHCFGDASEAAHG
AVAYIRRIGVHSIETAFVCSKSTVSPLKKTLSIPQAELVAVERGARLAHTIQQELDLPISMIVIWSDSLCSLDQVASNSA
KNVFCRNRPREIHRLTPNAVFSHVPGKLNPADILSRGCGIEELRDHPLWFHGPPFLCKKDLPIRTSSIQQAVAMSIISQQ
SDDTIINIDPTRFSSFHRLFNVVSRMVKLFNKHEGEHVIKQKAKRVIIQLAQQLHPPSEATINNLRLEKIDNIWYYVGRI
PDRKVPFLPSNHIARLFVRAIHINNFHSSPIYTLSKIREEVWITKGLSFVRKAIRECMVCKRMISRPSYQPDFPMLPTSR
TTWSKPFTICGLDYGGPIQATNQGHNRKYWFILLTCLSTRFTVVELVPSLDAEHLLKVMKRFASQYGTPQTIITDNAAQI
KMLAQVTEEAQKQMSSMSSSQTLPTFKFIPALSPWSGGFYERMIALFKNCLIRAGSTKTLLDEEDLRTLLKEAEAVVNNR
PLTYVSADDIRPLRPSDFVFPQKRDGKLLTVEETLDASLLKTSHGQLIEIWMRSSSMIEYFIRRWKEEYIQLLHSRTQTK
HRQNPHAVTRDLCVGDVVMIESDSNKMNWPLAKVEEVHKRSAKLFTPCTGKVVERPLTKIHQLEIDVTESPIRATSDEAR
KGSEDSGSAGLRRSRRISGSTTAMTMATLLAISFFIPTTRAATLPTHSDSHKSSQASVTELVHMGLIMVVFLGGVFIVST
ILQLALSLCRCGHIIVGTMISIARTIYWGLQLFMIQFAQYCRRRGRRQKIQDYRILMVVIFIQLQFTLACNDIAHLTASE
NACFQTEERTNCILNSVSIVTVKANASQSCLMIKTKEDIEVETLKITATALVSYCQKHTVFFSRDFKLEYEYTRRCDSAG
SCSVEKCGKMSGDENLPELSQAAKSKPGFTACAPGCGGITCSCFYVDPSCLFYRYYVVPTSNTIYEIFTCPSWTNRLHVE
ISVGDKTFTTEMTPGVKFQVPGTNVSITPISHTSVPLQAHSATFITAFSFGTMKDQWTAFTYTPPSAPGSPAKGFTGELQ
CKDRKTAEDFKCIFDPDLCRCSGFSTTVNCQCTNEEIGGHSKKNRLPVRGINHQVMKIKDTVVTSAILEAVVSFNVEFRN
ASVSRLTQVQSCQVKQIGQLSGCYSCATGGQAQLSCKSKRKMMARVLCNAMDGSVQCGPEGTAMIWTFSTPDQGVLVNCT
ADCGLRTNWMLSGRLKDPPTFSMNKSYFANPFETVKSSSFSFGQVLFNFAKNIFEGIQNILIVLGLVVVFIISFIIVRKL
GSRYFITRRRNQRLRFRTKYF
>MAX#LTR/Pao 1389-6881 [Drosophila fruit fly genus]
MPLEGDKKKTPAPGKEQKFNPQSPISTRGRPAPKSVSPRVKTATPTPKPKVLPSTSSKTTPRLVISRPVTRASSESSLSR
KSESPSAVGTDFLRVTRSTTKRMASSEQPTPANAALHKFIAVSDRVSLFEAKINTPDQASPSLHTLQVRLQQVRALWDKV
EREYETCSDLMAQEGSLDTVPILQAKYDYCYSVYESCAAQIGETIDRATPQVAQAPSQPLISSGCRLPPCDTEVFDGDYL
RWPTFRDLFTAIYVNNPRLTPVEKLFHLLTKTSGEAKAIVAKSPLTNDGFASAWEALRDRFQNKRLLVNSQLKLLFNLSS
ISQESGHALKELQSTIQGCLTALEHSQVSTENWDCILVFLCASKLPKQTLSLWEQSLTAKSEIPAWEEMNAFLSERYRTL
EAIEDMKPTQAVPKRLQSFETKVSTKQKGCDICSKENHPVRLCPRFLQMSVDSRSGYIKKKQLCLNCFARGHQLRDCTSM
HSCFTCKGRHHTLLHRSPPNSENASSSTSPPTQQLPRPSSRNASASTSAVQNFFASGTSAVLLSTAMIDVCHLGTNYRAR
ALIDSGSEATFISERLFNLIKLPFRNTRTQVSGLNHSVSAKSSKLCHFGIRSPTKPGLQLDTEAYVLPELSGKLPSYPIP
RNSLKDLPALRWADPTFFESSQIDVLIGADILPSIMMDGTRQNICGSLLGQETIFGWVLTGPISKGKPKRVASFTTQVHQ
TGDPDSLDTLLSKFWEVEDLPVKMVKESDSYCERNFLQTTTKDASGRYVVTLPFRDPENTGSDLGYSRSIALAQFLRNEN
RLKRDFPLKEQYDSVIQEYLDLGHMKEVPPTHNSPSYHLPHHAVVKPESTTTKLRVVFNASSPSANGISLNDILHAGPVL
QSDLTIQVLKWRYFQYVFSADITKMYRQIWVDPKHTPFQRILFRNKEGDIRDFELKTVTFGVNCAPFLAIRVLQQLAEDI
QVPFPNASRIIQQHMYVDDVLAGANSVNEAQSSIRELQAALSASGFPLRKWTSNNKSVLKDVPAEHLLHSEFLDIDAEST
AKTLGIRWRAKSDEFYFVPPDIVVEASYTKREVLSQIARLFDPAGWLAPFIIRSKIFMQEIWLQNLGWDDKLPTEMSQRW
QSFLEEYSDLNQIRVPRWIWYQPEVVIEHHGFCDASQRAYGAAIYIRVEMGQKILTRLLTAKTRVAPVKTVSLPRLELCG
AVLLTEMVTAILPHMPSASSDIRCWTDSTIVLAWLRKPACNWTTFVANRVAKITQATPVDCWAHVRSEQNSADLASRGVS
LQELAENHLWWHGPEWLQGPRELWPAQSDTLPVTELEQRAVKVHFVKGPSIDFLERFSKLDKALRVLVYVQRFFKRCRKG
SFLPSSRPTSEEIREAERTLTSIAQRRAYGQELQHLTEKRPLPVSSPLVTLFPFIDQHGLLRACGRLTASKTLQYDERHP
ILLPYDCRLSRLIVQFTHQITLHGGSQLIVRLIRTKYWIPKIKNLVKAVVNPCKICTIYKKRLQTQLMGDFPTDRVSFSR
AFTYTGIDYAGPFEIKNYTGRACLITKGYVCVFVCFSTKAIHLEPTSDLTTEKFLAAFARFVARRGCPQRVHSDNGKTFV
GAAALISRDFLQAIKESVTDAYSHQGLVWRFIPPGAPHMGGLWEAGVKSFKTLFLKSTSVRKYTFEELATLLAKIEACLN
SRPLSPMSEDPSDLLALTPGHFLIGGPLLSTAEPEIKGEAKSIINRWQHLKAQHQQFSARWKEEYLKELHKRSKWQFPTR
NLQADDMVVVKEDNLPPNEWRLGRIVSAFPGADERIRVVEIRTSRGTIKRPVHKVILLPMEDKESSVPRD
>KAMIKAZE_BM#LTR/Pao 1687-7450 via tfasty with BEL6_AG, 1 frameshift and 1 stopcodon.  [Bombyx mori]
MPSKSQAAIFREATKFITLLKEIALSILAGDRIKYDMADLSARLPRLDTNKSKLEDVYYEILDDEDLSEEQEKMYTKNYE
TSIVDYHDILVAWEKINSKPASSPSSQPSTSSTLTTVLPKIALPKFSSKVEDWPSFITIFKSLTDDMLTLSDSVKLHYLF
SCLSGEALGMVSHLKITNENFSVALDILTRRYENRRVLIDRFVDIIMSLPNIHSRSNIRTLFLTPLISAQSALSNLDLPM
KDCDYIFVSIVVRKLKGELRTLFERKHGSRQSLPTLKNLISFLEEHARCNETEWSNTTYSQYNQPSQKSGFSRRQSPTSQ
PLQVSRQTQYQQRRPFTPNNSRPEYLPRTTAPPWQINSAHPTQLSQNNNLYCPYCKTKGHKLITCTRYNDQPIQGRWDFI
RARERCQRCLGPHYENECKTTGVCKECGSANHHTSLHRHGASSPIQSSAHLLPLNLREQPRQRPTHCPRARSSHATSHTP
SPSHTPQVATQSTARDDVTALKAERDALARALAAERQRAATAPWLYKEADRPVSPQEYQTHGSSLHQSRSPRRNQxLSTI
TEHDQEEKYAQLMHTHTTHTRPTVSTQTITSAQHENHNPNTPILLPTVTLEIADVHGQFQRARALLDCGSMVTLITQRMA
RTLQLPLKNTSLQISGVGNQRTPYSKASIKIVCRPTHSETPTITATAHILKHVTGYLPLGKVQNISHMVDQSTIPLADQG
YHTPAPIDLLLGSDILGQVLDGTKVSLGPGRPIAFGTIFDFTLLGPIHDLYTAPVSKTESAHIVSAQPELEVSTHDIRKS
LEKFWESEEPQLHVETTPLQDQCEEIFRTTTTRKPSGQYTVTLPFLHNMPELGSTHAIALRRFLNLEKKLQADPYLRVKY
IDFMADYQKLGHMSPCHPSTFAHKPHFYIPHHGIFKSGSDKLRTVFDGSCKSSNGVSLNDCLHTGPALQQDIVDIILSFR
THPVVFSTDICMMFRNILIHPDQRRYQLILWRSSPDQPLLTYALNTVTYGLRSSPYHAIRTLIQLADDEGHRYPAAAQVL
RKSIFVDDILTGHDSVVKAQALQNDLINLLALGGFQLSKWTSNCPQLLERFPDDQCDMPKNFDISPDSNSIKVLDIQWIP
QSDELTYRISLPSIKQITKRSILSTVASFYDPNGWVTPVIFRAKLLLQKLWLLKLEWDEHTPVEVQTEWNRISQDLPQLS
TLRLPRLICTNKLKSTYSLHGFADASEASFAAVIFYLHELDEHRCVNVYLVIAKSRVAPVRNRLTIPKMELSAASLLTQL
MIRVSTQLLSHITIKQHICWSDSTIVLAWLNTPPHRLQVFEANRVAKITSNPITSTWKHVPTNLNPADCASRGMSAQSLS
AHDLWWSPSWLKEPPDTWPKMPPALGHHALPGLKPKKVPAHIAVPDLDLDLLTRFSSLDKLVGVTACIKRFIFNCRHNST
DRCSGPLTVGERRDALLFWVRSVQHNEFAEDIYRLQVGKICTVRLQRLSPLMKDDLLRVGGRLTHAPIRYDAQHPLVLPS
SSPLVDLIIDHYHRINCHPGTDTLHAILRQQFWILSARRVIRHRVYKCIRCFRYRAQARAPLMADLPADRVTPQPVFSQV
STDFAGPFLIKSSTLRNAKLMKAYFCVFVCLSTKAVHLELVSSLSTEAFLAAMQRFVSRRGTPTLIRSDCGTNYVGAKNH
LIEVQDFLAQNNDTITHRLANQHITWLLQPPTGPWFTKPWPSEIAVKSTKKLLYHVIGEQHLTFEEFSTLLTRVEAVLNS
RPLCPLSSDPSDFEPLTAGHFLIGCPLTALPEPSFDDRPLSALKRFQLIQALSQRFWTLWTKSYLHTLQTRSKWLSTSSP
PQVGELVLIKEDNQPPLQWKLGRILRTLPGKDGVIRVVDLDTKHGSLRRPVFKLARLPLDSAHEEVQPRPPQDVRATARR
L
>CATCH2_DR#LTR/Pao 35-5775 via tfasty with CATCH1_DR#LTR/Pao 3 frameshifts and 1 stopcodon. [Danio rerio]
MATPKSAPSSSRRPHRVIQRPAYLDDYIVNYAGNPSSHPVGPKEKAIMTSTPITTSQSYGTAGSSEDFMQQMMEITKQQS
ETARRQTELLEKVLLHSSLQASTPSSRASSRHQTPRTRILQSVEKGQPTSEVSPDVVRIQSSPWPLPNNPPTVEELSQSL
RKTHLRDTYFQSPPPVSRETTLTSHQYATPYSSSPLDQIRTHQHNQAEPWTKPLPPLPGQQPIQTTQPHFYNIPPAAVHP
VHSRFVSVTEPMPQTSYQATSQFTVPYALYPMHLLLLHTGVQQXKGPTFPDFYKEDRAQYVELRMALDNLLHPQIPENYK
YSILLKHVKVPNAHRLVLAHAESVTPYTNALQALDRRYGRPYQFVLREIDIENLPAIRAGDERAFDEFFLRVQAIVGMLK
ALKDDGIEELHSESNVKRLLNCLPRSQQTQFRRHHLQRNPDKTKFSLLEFADxLQLEANCLEFDPTDTTRTLNRDQRAVT
RQQTRQTSILHGVNQRRTTEQVTKPTIIQQKAPNKHKPVCPYCNAEHYLSQCTAFNTLTKEQIVGWIKENKRCWKCARLH
MAKDCDLQKPCHLCQAKHLSVVHDINQRKAEVTNESSSLYNSTTETLYLDQPRCGGKVFLKVVKVTLHYQQKALDTFAIL
DDGSERTILLATAANHLGLKGKPEQLNLRTVHQDIRTLHGTSVSFCISTPSNPGKRYAIHGAFTAEQFGLAEYTYPVSSL
QKRYRHLRGVPIPPLHKACPLLLIGSDHTELITPTEPVLLGPPGGPAAIKTRLGWALQEPSKHVQEQLPISQCLFTSNCS
PSAELYHQIEKLWQMDILPYRSEKSVVRSQQDQEALNMLETQTVQVKVDGIDRYATPLLRVKTMTLLNAPKEAVMCHLRS
TKRRLTRDPPLALKYQEEIKKLENAGYATKIPPQEAAQSTESWYLPHHIVTHNGKHRVVFNCSYTYNGENLNKQLLPGPT
LGPTLLGVLIRFREHRVAISGDIKGMFHQVRLLTKDKPLLRFLWRDLNPENPPDVYEWQVLPFGTTCSPCCATFAVQRHV
FSHCQQGDKLRQSVEHSFYVDNCLQSTSSAVEARELIDGLRSILASGGFEIRQWASNEATVVRHLPKEAKSENTELWISQ
SQADPHEMTLGLSWHCVPDTLHYRRRPLPYQEVTMRNIYRVLASQYDPLGYIIPFTTRAKIIVCQLWAKEREWDDPLLPS
ELLQAWQNWEAELNHLPKITMPRCYVSATLDVPEAERELHIFCDATAEAYGSVAYLRTEHQGQIELAFIHARSRVSPKRQ
QSVPRLELCAALTGAQLAKLLHNELSLKIKDTFLWSDSTTVLTWIKSESCRFKVFVGTRVTEIQELTEGHYWRFVDSGNN
VADDITCGKSLLELSQPNRWSKGPDFLYLPPVSWPESLSVELDADLTELRNTKFCGLTLDGSGSSLPDANQFSTFEELLE
ATCRSLHGAAGETTDPEAIQYRQAETDLLRRAQTDSFPLEYNALTAGKPIPSSSRLLSLSPELDKTAALIRVGGRLRQAQ
HLCYSTVHPIVLDPNHPITRLLIKQYDAKLGHPGPERVFAEMRRYYWILRGREAIRRHQRSCVECQRWRAKPNIPKMAEL
PPARLRLMKPPFFSTGVDCFGPFLVKRGRSNEKKWGIIFKCMTTRCVHLGLLANMDTDSFLMALRRMVARRGTPSEILAD
QGTNFRGGDKELQTAFTAMSPDLQAQLAKQKIQFHYNPPNAPHFGGMWEREIRSVKAALRTIIGPQTLTEEVLKTLLIEV
EAILNAKPLGYVSSDLADPDPVTPNYLLMGRPDVSLPQVIYPESEILSRKRWRHSQVLADQFWTSFIKNYLPTLQQRQKW
MTDTSNLTPGTVVMIIDHQLPRALWPVGKVVTTYLGLDGRVCSATIEVKNKQYHRPVARLITLPSIPDDNPTTD
>BEL-605_AA#LTR/Pao 24-5926 via tfasty with BEL-631_AA, 1 frameshift and 1 stopcodon. [Aedes aegypti]
MSGRSKSSARTSESIRSKQSTRNKEKPPSGSKNKFTGNSCHTCKSFDNSQMVQCDHCDDWHHFACVGVTQEIEKNSWCCP
PCEKSKQQSSMTDVESEQKAKTKTTGSTTSKKPAETISETVVKKATGAIKKVPGVSKKESLVKTTKMQTRKAKARLAEQS
ERSKAASLVSASSIVSSRAQLEAEIKRVEAEQTLLEQETKRKRDLFIKKLSLLEELAETMGELEVAEEQGANEKVNSWLG
SNNLQQEVGNGKHESNDDDSDEETDDSIDETATSDTSEEGDGDDGGSRSFVPLRKSTPTRQTLAKLPNADRTCLNRSQKT
LTQEQIAARQVVSRDLPKFGGNPEEWPMFISTFESTTKMCGYRDEENMIRLRNCLRDDALNAVRSFLMHPSTVMKAISVL
KLRFGQPQIIINTLREKILTMPPVRPEAMDRLIDFALSVQNLCATIDACGRKEYKRDVTLLQELVGKLPPSIKLDWARYQ
RTHSKVNLFTFNNWVYSVAEDACLVSGATVYNAKPIENRGKKSNKAYVNSHIEWRSEKQNRQDTKPSNIKQSAAAPTEEK
VPVNSSKGCPICKGWCKTLVKCERFVGLSYEARWSAVRELKICRRCLRQHGGTCDRKPCGINGCTFKHHPLLHKNMSVAT
NIPTIHEKEPAVINEERSLNAHLSVKGARMFRNLPVTLYGTNGQVDCFAFLDDGSELTLIDRGVADSLSSSGAPIPLCLK
WTGGTHRVEASSRSIDIKVSGSSGKIFHLADVRTVEELRLPQQTLDVEQLVKSFPYLKGVPVTSYSMARPRILIGLKHAN
LSLVRRTREGSAGDPIAAKTLLGWTIYGGCAGNLARDAHHTYHICECNLRFDESLEKAVKQHFALESLGVSRPENPVLST
AEQRSQQLLQSLTRYVGDRYESGLLWRHDNVRLPDSEPMARRRFECLERRMAQDESLARSLRKKIEEYCDRGYIRKLTEE
ELAGQYERVWYLPIFPVKNLNKPNKFRIVWDAAASVHGVSLNSALLTGPDELVSLPSVLQTFRQFRVAVVGDIREMYHQV
RMRLPDQHCQRFFFRNDKSEELSVYVMQVMTFGACCSPATAQYVKNRNAERFQIDYPRATDAIVNKHYVDDMLVSEETEE
AAIDLAITVRGIHAKAGFEIRNWLSNSSKVAAALNGASTEEKDLNLTAELANEKVLGMWWNTTTDCFTFKLSNGRFDQSL
IDGSRRPTKREVLRVLMSIYDPLGLISHYMMFLKVTLQDVWRTGIHWDAAIEEKQFKNWKTWVKLLPNLEKLSIPRCYRQ
VTSACETTIVQMHTMVDASINGMAAVVYLRFEEKGKVECVLVTGKTRVAPLKYLSIPRLELQAAVLGCRLAESVSNNLSI
KISRRLFWTDNRDVLCxLRSEHRRYSPFVAARVGEILDTTTVDNWRYVPSGKNAADDGTKWSGQPDLSSTSRWVKGPKFL
WESEDSWPRMPFINSETETELRSSVMIHLEAPLPVIVAASFSSWRRMILVTSYVQRFIANTRRRLHKQNIQVGPVTIEEM
HAAERYHFRTAQNEAYSHEISILRASSSSKQIPKSSPLSKLSPFLDINNVLRMRGRVSACLYVNEETANPIILPADHAVT
SLMLNSYHQRFHHRNFETVVNEVRQMFRIPKLRRLISSLRRKCPKCKIRDVRPNPPEMADLPGRLAAYTRPFSHVGVDYF
GPYLITVGRRTEKRWGVLLTCLTTRVVHIEVAYSLTTSSCIIALRNFIARRGTPLAFYSDRGTNFVGAQKELQKASELLE
QNKIACEFTSPRTSWHFNPPSSPHMGGSWERLIQSVKRNLQEIQGTRRLSDEELRNALTEIEFTLNCRPLTHVPIDDESE
PALTPNHFLLGSSDGSKPLTRNDESAATLRREYEVSQTLADYFWRRWLRDYLPDITRRTKWFQKVKPIEEGDIVVIADPD
HPRNCWPMGRVIGTVNRDGQVRRATVQTSKGVYERPAVKLAVLDLASE
>BEL-599_AA#LTR/Pao 39-5409 via tfasty with BEL-10_CQ, 1 frameshift. [Aedes aegypti]
MEAIRKRRNVLFERMKWELSNASAVEKRKPPVGEVQERMHKLSELCEQFDKVQSEIEDQTEAIGEISSIFNHRLEFEELY
YQVKGRYMKLLEEHNPHGSSEGTIVEPADDLREAIRLLLDSQRILMTSQAAASNNVSQLAGQIGSVSLSHPVADAQASGG
QVPLEVRLPTIALPVFKGDRKHWTSFKDLFESCIHSKNLKNSVKLQYLLSHLDGEAKKLVSSFTITDANYVEVWERLNEF
YDKKKYTVAALVKEFVDQPPVNAPTLIGLRKLVSTSDEVVRQLKALGEQYESRDPWLIHLLLEKLDRETRSLWAQKLVDE
ENPSFQDFITFLERRCDALETCASFSKKGADTATKKEQDRRVDQSTKPGKQIQSFLASTQQPCPQCSEAHTIYQCASFKR
MAANDRRDFVQRAKLCFNCLKVTHSAKNCTSAVVCKQCKKKHHSLLCTSGDSSASDSGQPREGPAAANQQHSGEAEHADS
VASYVADLKTSCPANFLSLLPTAVVKVLGKNNVFHEVRAMVDSACMNSLISKPAFDRLGLERRNANILVSGITDGKPSKT
TGAVTLQISSRFDDRIVIVVEALILNHLVPDQPSQHFDIDTGALDEASLADPTYNKCGKIDLLLGIEAFFSILEPGKLFD
GRGIPIAQNSVFGYLVGGHFNTSHVTEGRAMLGLTATMNLDRTLRKFWEVEEVPKSKQLTPDELRAVEHFHSTLSRNETG
RYTVRLPFDSSKPELGESATAAIRRFKAMERKFSIDPELQQHYQKFMTEYEALGHMEKIPPCEVAVAPEQSFYLPHHGVW
KVDSETTKLRVVFDASSKSASGVSLNDRLLVGPNVNESLFNVFTRWRTYKIAFCADIEKMYRQVLVAKEDADFQRIVWRD
HPEQPLEHYRLLTVTYGTASAAYQAVATLQQVAADNKETHPMAAERIPKNFYVDDLLSGADSIEEAKFLRNDIVQVLNDG
GFVLRKWSSNDPQILEVDAVQDDPIHLKLPQEDDSVKALGIRWNPQEDSFSFKLTFDIDSTNTKRQLLSDSSKFFDPFGW
IAPIVIRMKILFQHLWLYDLSWDDPLPAFILEEWIALKETLHHIERIRIRRWIPHSGGKLQLHGFADASEAAYAAVVYVR
TVDQEGRIETNLVVAKTRVAPITQISLPRLELMAAELLVELMVKVLESFSHLEVKIFAWSDSEIVLHWLSSVPRKWKTFV
ANRTSKILQHLPRNHWRHVSSRDNPADCASRGITPLELLMHPLWWRGPGWLSETEDKWPAQPGRLVEEDELLEQRTSVTC
LFANATPPSRGGHETLTFLLNRFSDLTRIRRVLCWINRLCHNGLARQRGAARLEGPLTPKEINDACLQLARAAQHDCFKK
EIDCLVKNDPLPGNSKLKSLFPFIDADGTLRVGGRLHNSSQPYDVRHPVIIPKEHQYTKLLLTETHLRNLHAGPTLMIAT
LNQRYWIVGCQTVVRSSVASCTRCCRLKGKTATQLMGSLPSVRTTPARPFVHCGVDYAGPILLRSSNLRTAKTIKGYVAV
FVCLATKAVHLEAVSDLSTNAFLAALKRFCGRRGLCSEIWSDHGTNFVGADRAIREHLQSPEFNQAVSRYLSDLKIKWKF
ITPSAPHMGGIWEAAVKSFKKHLRAVLGNTTLTYEELSTVLTQIEACLNSRPLCQLSTSVDSYEALTPGHFIINQPLNLL
PEPNINHIQEGRLNRWQRVQRHVDDIWARWRNEYVATLQPRNKWQSVQQNLSSGQLVLIKNENTSPAAWELARIVATHPD
QYGVVRTVTVRRGQNEYQRAVHKLVPLPMD
>BEL-618_AA#LTR/Pao 471-5708  [Aedes aegypti]
MPDEKRLKAKELKRRNVIEALKRLDLFLSSYDPDQHQHELPHRLDRLEKIWSAYEIVQDEYEEMDDSDEFVQSNLAMRGK
VEELYFRVKAGLVSKVPAPQAPVAAAPPAPAAQSALSNVKLPTISLPEFDGDFNNWLTFHDTFVSMIHSSTEISHVQKFH
YLRAALKGEAARLIQSITITANNYAVAWDTLVKRYSNKAILRKKHIRALLKHPKIPNNNVEALHKIVDEFQRHTKVLEQL
GEPVDQFSSILIELLEDKLDDASLTAWEESIAADAHPTYANMVDFLQKRARILETISINRPQIPASKPSAYLSAQKKPNQ
PRLSTNAATEVPSKSFPTCPACEKQKHSIFDCSVFNGLDPKGRMKVVTEKKLCSNCFRSDHFARNCRSKYNCKHCSRRHH
SMIHPGPSEMEKVATEVGCENPLPGPSSVVTAVAAVPTPEAISTVKSSNASVLLTTVVLIVVDVYGQEHIARALLDTGSQ
PNAMSERLCQLLHLPRXIVNVPIAGVDNTVTNAKHEVRAEIRSRVVNFSESLEFLVLRRVTSDIPSASFSASRWAFPENL
PLADPDFNTCRKVDMIIGAAHFYSFLKEGRLRLPEQGPMLIETVFGWIVAGKYDNPAEPSKCSAVTCHAATVAAVNEQLE
RFWRIEELQGSNYSVDEQKCEDYYRETVSRDPTGRYVVRMPKHPEHERMLGTSKVSAIKRLKWLEHRLAKDEGMRTQYHD
FLREYISLGHMTPIQDEEECDLKVYYLPHHPVIKESSSTTKVRVVFDGSARTSSGFSLNDSLLVGPVVQDELLSLVLRFR
KFPIALVADIEKMYRQVSMNPSDRPLQRILWRFDASEPIQAFELATVTYGLAPSSFLATRTLLQLVEDEGSSFPKASTAI
KKNVYVDDLISGHNSIEEAIELRKELETLLQKGGFRFRKWCSNSLPVLAGLPPELLGTQSSLKFDPEESIKTLGIRWEPE
SDVFRFDVSVVIKEAPPTKRNILSTIAQLYDPLGLIAPVVVQAKMLMQNLWLLALDWDDEVSPDLQHKWGQFCEQLPGLS
KFRIERFAFASGFHSPELHCFADASEVAYGACIYVRSVATDGHVQVTLLASKSKVAPLKPLSIPRLELCAALLASRLYEK
IVGSLDMEFSGSFFWSDSTIVLQWMKAPPRTWKTFVANRIAEIQATTVGSQWQHVSGKENPADMISRGVVVEELISSTLW
KYGPVWLRQDKSTWPSQTVPDSKFSIEELELKKNVILTTQLIHPDPLFERFSSYQTLLNVVGFCLRFLHNCRFKNQRNSA
SVLSVAELQSSKTALVKLVQAEAFPDEIQRLKKGFMVSSKSSLRLLSPFLDAEGVIRVGGRLQLADTPYDVKHQIVLPGF
HPFTRLLLKHFHRKLIHGGIMMTLSVVRDEFWPLNGRKAVRSAIRSCYECSRANPQPIQQPIGQLPIARVTANEAFACTG
VDYCGPILLKPVHRKAAARKSYICVFVCLSTKAVHLELVGDLGTSAFLMALDRFVWRRNKPQHLYSDNGTNFIGAKNALH
KVYQMLQPGSDSDKINKHLAEDRIQWHLIPPRAPNFGGLWEAAVKVAKIHLVRQLGSSLLTFEELTTVLVKIEGCMNSRP
LQPLSSDPNDLGALTPAHFLVRNMIRPLPEADIRTIPLNRLNQYEKLQKYSQNFWYRWRNEYLKELNQQYSANQKRYPMN
VGDIVILKDESLAPARWPLARIIDTHPGPDGVARVATLRTASGTLKRAVSKICPLECAMEQPAKY
>BEL-642_AA#LTR/Pao 618-6059  [Aedes aegypti]
MSVNDDYRLLCKQERSLRISLENMKEFAHAHQAGADRHDVDLRIAKLDEIWEKFVGVRLRIEMLTEDVGDGDISTDTEES
EEAKLQRHIRLQKQHDRDNARIIKDFENEVYQLKKAFFSLLQAGPSCVQQVQQYQNAAVPQSKVKLPELKLPTFSGRMSD
WVTFRDTYKNLIHNDNCLSDMDKFTYLRTSLTGDALQEIASIEMSAVNYAIAWEALENAFENKKLLVMTYLDSLFALESL
RQENFESLSRLVNGFEKNLQMLTKIGEDTEGWSTLLQYMLCKRLHPTTLRQWESHYNSKEVPKYKDLIKFLKSHCSVLQS
ITPGKQFQAESRKPVRPSISHAGVQSTSCCPFCGESAHSAFKCAKFSKMRIAERVDAVKKHSLCLNCLSSGHIARFCTRG
SCFHCGQRHHSLLHANSSTTANSSTKSGQSNGNQPIKKPQGQNSQPPQAKPTPNGXSTNTQPTQSGRTDPQNSTNASNAH
SHTSATDCPSTSYHTAPLSTTRHVPHTVLLSTAVVSLCDQFGNTILARALLDSGSQRCYMSEAISQKLKFKRTREHLPIA
GIGGARTASTKAVFAEVHSLVSKYVTNLKFHVLPRVTVDLPTRSIDIRSWNVPKELILADPTFHESGAVDLIIGAEVYLE
LMIAERQIKLGDSGPVLQNTLLGWIVSGGIPNDSITLPSVSACATERIEEELARFFELESCRTTSTLSLEESACETHFEK
TTKRDPSGRFIVQLPRKQFLVERLGDTQAIATRRFLALERRLDMDPAVKKMYIEFIDEYLRMQHMREVSPRELSTFPVTY
FLPHHAVLKPDSTTTKLRVVFDASCLSSSGVSLNEALMVGPVVQEDLTSITLRFRLRKYAMTADIEKMYRMIKMHPLDHP
LQCILWREESAKPIRFFVLTTVTYGTSSAPYLATRCLKKLAEDEKANFPAATETIIYDFYVDDMLKSVDSVEEAGQLSRD
LIHVLGTAGLTLRKWSSNSREVLDQIPPYLRDERSSLDLELSTPTVKTLGIKWEPRLDIFRFTVPQWNAATEITKRIILS
DFAKLFDPLGLVGPSLVPAKVFLQDLWRTKCSWNDTLPDELQTWWREFRESLEGLTHLQVPRWIAFGSDTISAELHMFCD
ASKKAYGACIYLRCTSFDGKVTSALLTAKSRVAPLEDLEKKRKQTSIPRLELSSALTGAHLYEKVVQSIKITAQPYFWTD
SMIVKCWIAAVPSRWAMFVANRVSEIQHITRGGIWNHIAGLDNPADVLSRGMAPDQLKDYGMWWQGPPWLCLDKASWPKT
ATINSDDLDPALLEERTTVSAPAQVVEPSPIFGLRSSLQDLVRTVSLIRRFTYNCRNTSDRRIGFVTHEERAEALHQLLS
LAQQESFPEDLAALRRTGEVKSTSRLRKLAPRIVNGILLVGGRLQNANISAGRKHPVILDNHHPLSILIAVHYHQKNLHA
GQQLLVASMREKYWPLSARNLARKVIHRCVRCFRARPTAHEQLMADLPAERVTPAPPFMRVGVDYCGPFYIQYPYRKGGP
IKCFVAVFVCLAVKAVHLEVVGDLTTQAFIAALRRFVSRRGRPEILMCDNATNFVGARRELDELRKLFNNPDFIKAVTEE
TSWENINFKFIPAKSPNFGGLWEAAVKSMKEHLKRTLGNTVLVSDEMATLVAQIEACLNSRPITPLSSDADDLEFLTPGH
FLVGRPLTAMPEPSLLDINESRLSKWQRVQYFLQRIWNRWSTQYLSNLHARTKWTRQRNNLFVGVMVLLCEDNVPPLRWR
MGRVTEIHPGKDGNIRVVKVRTKDGDFLRAISKVCVLPIQDNEGARSATREED
>BEL-637_AA#LTR/Pao 48-6687 via genewise with BEL-635_AA#LTR/Pao, 1 "intron" (4460:5093) [Aedes aegypti]
NVTGFNCKRCQRPDSADEQMVACDICQEWEHFNCAGVDGSIKDHPYVCSMCKPKKTGTKAKESLKPPEKNDKKSSRTSSK
KAGTKANPAPSSASSATRMAMLEAQMKLIEEQELQQKQDLEAEEELKKREMEAAQRHLEEKRKLLDEENRLRELKLREEK
EILEKRKVMRQQSMEKKNELLKQMSECSSKSGSNVDSIEKVSSWLAKQEDLPPHSEAHVQPSMPFPTLTQTAASTSMQPP
NAISSSVPATVHVSQPVRSVFPPLVQPTALMSALNQQPxPSMIAPTGNEIGQSHPYSQAPASSAVPAVLDTNQLAARQVL
GKDLPKFSGRPEDWPLFITSFEQSTLACGYSDVENLIRLKKCLEGNALESVRSKLLLPSSVPHVVQTLRTLYGRPELLIR
SLLEKIHQVPTPRYDRLETVIEFGIAVQTLVDHLVAAGQNVHLSNPALMQELVEKLPGTMRMEWAVYKSRLPVATLQSFG
DFMSGMVTTASQVSYELPSLDRSGKNDRSRARNKGVIQTHSTGLVAASTPTTSVIKIGKPAKPCACCNREGHRLVECNRF
KSLSTDERWKLVEQRSLCRTCLNSHGKWPCRSWKGCEAEGCRHKHHTLLHGAIANSQSGMSASHLSAGQFCMFRIVPVVL
HGKGQKLLIFAFIDEGSSETLIEDAVAKQLGAHGPTEPLTLHWTGNVSREESNSQRVQLKIAAKNSESILDLHHVRTVSC
LVLPSQTLRYGDMVRRFPHLGGLPIEDYTNVQPKLLIGLNNLSLCVPRKLREGGPHDPVAVKCHLGWSIYGGVPASAIRS
VAVNFHAAAPSDPDKLLNEQLRDYFSIENNISASMEVDSEEDKRAKALLESTTRRIGQRFETGLLWKTDAIDFPDSYAMA
LRRLLSLERKLRQDPELGERVVQQIRDYEQKGYARKVTEQELASSDTKRTWYLPVGVVVNPKKPNKLRLVWDAAAKVGDV
SFNSNLLKGPDLLTPLLAVLSRFRQYPVAVTGDIKEMFHQIRIRKEDQQSQRFLWRENPTEMPQIYVMEVATFGSTCSPA
SAQFVKNLNAKEYANQYPRAAAAIHDNHYVDDYLDSFQTIEEAVQVVEEVKFVHSMGGFELRNMLSNSVEVLRRIEQRPG
ESSKDLLVTRGESTESVLGMRWIPTEDVFTYTFAPRADLQAVLEENHVPTKREVLKVVMSLFDPLGCISFFLVHGKVLIQ
DTWISKIGWDDPIGDSSLERWKQWTGLFGQLPSLRIPRCYFREPFPRNFDQLQLHVFVDASESAFSSVAYFRLPVGEQIQ
VAMVASKTKVAPINTISIPRLELKAAVLGTRLLESIRAHHTIPIAESFLWSDSKTVLAWIQSEHRRYHKFVAVRVGEILL
STDVNSWRWVPSKINPADEATKWKNGPNLNSDSSRFRGPSFLQRDENSWPKLLPATTSSLATTQEELRSVHLHRVSFSVV
DPSRFSKWNRMLRTTAFVLRYVDNLKRRIERRQPISGILHQEELAKAERFLWKTAQAEAFPEEIAALKTTQGAPEARHCA
VSKSSRIYKRWPFLDEEGVLRTRGRIGAAPFVQYEAKYPAILPEKHPITALLVESFHCRFRHANRETITNEMRQRFDIPR
LRVLVSRVMRDCTWCRVTKAVPIQPVMGPMPEARLRSFVRPFTHVGLDYFGPVFVKVGRSQAKRWVALFTCLTIRAVHLE
VVHSLSTVSCIMAIRRFVSRRGTPAEFYTDNGTCFQGASKELAREIQSRNEAIALTFTSAHTKWHFIPPSAPHMGGAWER
LVRSVKAAIGTILDAPRRPDDETLETILFEAEAMVNCRPLTYMPLESADEESLTPNHFLLGSSNGVKISPTEPVPEHATL
RNSWKLAQHITDQFWRRWIKEFLPVIARRSKWYEEARDLQVGDLVLAVNGNLRNQWIRGRVIQVFPGRDGRVRQALVKTx
TGVFRRAAVKLAVLDVEEKCKPDDELSETP
>MAX_p2#LTR/Pao 6974-7852 Best matching AA 413-715 of the main MAX product [Drosophila fruit fly genus]
MAPRPRATQSLESRRTRGIKSYRCRVCSGIHPLRKCTRFHKLSVEKRLRAVLINKYCSNCLAHQHSGGDCRSQEGCKKCG
GDHHTLLHMHEVLPAPNPAALPAPTRRERHPAAPRPVRISRTPPPAPVANNRPRQQQQKAVPILPTAIVVLDTGSKTFET
GAMIDPCMPVSSIDRSLAAAFRLPITRLGGNEICSVTLRSRTSTFRLNVVLKIDPILRIRTPIRALSDAARAKFDGVRLA
DERFHRPASISLVLGSDVYANLIQPGFLKIEDGLPVAQNTVFGWTVSGTCAK
>Helitron-2_NVi_hel#RC/Helitron 1409-5482 Incomplete N-term, via tfasty with Helitron5_hel, 5 frameshifts and 7 stopcodons. [Nasonia vitripennis]
EYDDKTYTLNYLGKMDQECEFCSAKHFLLELPVDKKYSNCCHKGKVIIKDKFQYPICLLQLTNRKSQESKQFMRLIRNYN
NALAFASFGAKLDIVPGHGPxVFRICGQTYHNAYSLNPVTNENRKFGQLYIIDNEIANEIRFSTDIKCNIKLLNENDNIL
RKINPYAEAYKMMHEVEEEELKRARNANELPREVKMFITRQNYSNNKTFELPSCNEVAVVFVGEEGEPPFNRDFCIDSKN
SKPEIFQLxVNMLILxQYPLIFPFGQGGWQPNYESEIKNKTQVTALLYYSFPLSVRNEFNPCLNLGKLTQQFIVDSWCKV
EGTRLFYIRNQQAKLRTETYRGLMDYVTNKAQSINVNIGKMVILPSTFIGSPRSLQQNYIDAMTVVQTFGKPDLFVTMTC
NPKWIEIVENLNENENTLDRPDLVARVFHLKVDCILExIKKKIFGKIIGYIYVIEFQKRGLPHMHALLYLDFKDKFHSSD
QIDNIISAEIPDESNYPILYGLFKQHMIHGPCEIQNKNSPCMDKSKFICTKKFPKPFASSTNYNVENGYPIYRRRNDGRI
IKYGSNRTANNQFVVPYNPYLLLTFNCHINVEICSTVKSIKYLFKYLYKGPDSALVGFRKENDLNNESDITSNNSNEITN
VLNYDEIEQYLAMRYVCPPEAMYRLLEFKLYDQSHVIYRLAVHLENEQFVYFKQGSETELIDRNVNTTLTAWFELNKINS
LARDLLYIxIPNHYVFDKKLKIWTPRKRIYKPILSRMYFVDPKKRELFYLRMLLLHVKGATSFENIRTVEGIVYSSFYEA
ALALHLISADNEWDKCLQEAINYQFPNALIQLYSFILIFHHPCNAKELYNKYKTYFYDPKLNDEIAEQTCLTKINNILIS
HGITLRDSxLYLxLTKLFKFSITLMICETTPLAPSYDSNIIHSLNKRQRDIFNEVQSSNFVISVAWTGIAANLLHGGKTV
HTTFKLPLNLSELSTSNVSPNSNYGKFLKTIKVLKYAFDAIDKLFKDLHNSVEPFGGIVVVLSGDFRQILPVVRRGSRAQ
ILESCVKKSSIWNKFKIMKLIDNIRVTNNDQLFNSWLLNVGEQNCTLKFEKQNHVTLISNDMLSRGNLIYEIFGSKIDPN
DKTLYQKVILAPTNIDVLKINDEILDQLEGESHTYLSIDLVNTETNEDMFNSISIEFVHSLTPNGLPPHKLTLKVDAIVI
LLRNLNLDGGLCNGTRLMIQELRSYVVKAEIITGTSKGKIILIPRIDLSPSIEEVPFTMVRRKFPFRLGFAMTINKSQSQ
SFDNVGLYLPSSVFSHGQLYVALSRVRQKNNLKILLAKDSVITENQDDKINYLNKRFNDNLKIYIKNVVYREIFELDNF
>Helitron-2_DVir#RC/Helitron 2729-8905 [Drosophila virilis]
MPRASKKSANQRRQDAINRSRVYYIENTESVCLRNSQRLADTRECNGDIREVERNTDALARSKRRSARFRQDERDLDAAA
RATQRQDEDVRALEQTQNTADHAVRRQNLEYRTLERERDAEAHATRRQDLEIRLQEQELNTVEHTVRRQNVEYRESERQR
DAAAHVTRRQDLEIRLQEQEINTVEHTVRRQNEEYRASERIRDASAHVARRLNVNVRELEQDANTVQHNIRRQNEAYRTR
ERERDVLNRRNARQNIIARRREQVVNSSQRRVTRNQDRIRENELRNMAEARVINFRNSFQNRAIQSAQQSQRNRDAREEM
STEQREQQRDLQRQRRVFSARDKYLENIKKGPTEICISCGGTWFPFQVKLLNKINLSAKFPNMDISKAFYLSNKFPSLSE
DYLFCSTCRRHISSGKIPSLCLSEGFNFPEIPDCLKDLTCLEERLISPRIPFMRIISLGYERQCAVRGAVVNVPISVSET
VTALPRTFENSHVVQIHLKRKLEYAHNFMTETIRPARVLEALRYLINRELYLKHNISVASNWLGVNAHNEEVPFVADPAD
ITAVDSLLRCRMETDSEGHDTSDLNPGGQETLLDNESIENNAIIGRIAMAPGEGRRPIDMTTDEDAEELSFPTISCGEIC
KSKSTYCRKAKSQIRYYDRRCAKVPKILYMYKCYELTRIKSSISICLRKKSRNANITVGNLRDEGFVSNLVQHDDGYHVL
KGLRSATAHWEAEKKKVLAMIRQFGLPTFFITLSAAETKWSELLVILSLILDNRVLSEEEAANLSSSEKARLIRSDPVTC
SRYFDYRFRQLLKLFKTDIFGEYQLSHFYWRIEFQHRGSPHSHGMYWLSSAPKLNENSSQSSRQVIEFIDRFITTNGDNP
DLEEVIKYQQHRHSFSCQREINRHKICRFNMPYPPMPQTEILYPLEEGDSNLRRHQDMWKKIKELLDSSVSDAEALSLNN
FDSFLAHINTDYIGYKFALRSSLKKPQIFLRRKYCDKMLNAYNEDILKLYRANMDIQYILDAFACCSYIINYINKSNRGV
SQLLREAMNEISSNNISVKQKLQHIGNKFINGTEISAQEASYNILGLHMSGCSHGEIFVNTSHPDQRVGMVKAQRDLETL
PSDSKDYFLPNLLDHYVQRPDELNNLCLADFAAKFKYSKSLNAHSTGDYEEENDDEEREDNANDGSPMVLKNRSGILRER
RHSLILRWRRYSINISRSDYFRELVMLFFPWRNEQVDILSTDNEQTFNAQFQIIESNRKRYEYLDEAHFQEVLDEIQEVN
NDNNDGQEISASQLLDEEFRGFAVPEVARNINVFEDNVHEGNSDENAIRMIKLPAQVPENELNLMVRSLNSKQRQYYAHF
MHNMNVMQIFYDYVGGGAGVGKSRLISTIYQSLTLRFNTRVGCDSDSAKILLCAPTGKAAFGIGGLTLHSVFSLPVNQYS
MELRPLSNDAINTMHSKLIDLKLIIIDEISMVGAKMLSYLDLRLKQIFRNNTYFGGISILAFGDLKQLPPVGDRWIFAPN
SRDPYSIILGAPLWDLFQYFELTEIMRQREDCAFAIALNNMSEGKMTDTDKLLIQQRIVLPSEINNIPNDAIRLFYSNQK
ASDYNNIRLSQIIIEEYTSKSKDMLKTKSISERNKLNILENIKAFKTSETQGLPYLLKLKTTAKYMITVNINTNDGLVNG
ASGQLMHIDYTASVSDVLVSTLWLKFTEATVGAQARAKKTNPLHSDWTPIERVLRTFQYRKNDQVTIERLQFPLVPAEAI
TIHKSQGATYKKVAVHLQDGISRAALYVACSTATNASGLFLIGKFNPPREIQATDPVYIELEKLRGEKKLTTHHQIYFER
VEGNILTYFHNIEGLHNHSLDISNDFIIKAADILCFVETWSREGQVYNIDGFDILGRIDGSMCTGSTRPPGGIIVYAKSY
IAQSAEILSVVNINLEHNKVCQILIFQHLDTKYVVVYRNPSFSFSEFRKLFLEHLEQELDRHSKIVILGDFNSCRARVRD
QLEIRLNELGISSLLRGVPTTKQLTEIDWVFSTNGLDNKRAQVYETAYSYHDGIFVFNS
>Helitron-2_SBi_hel#RC/Helitron 1835-6112 [Sorghum bicolor]
MPRETHMLKPVPDCHHCGAKRFPKEPPGFCCRSGKVELNAPVVPNQLMRLWTSSDADARHFRNNIRFFNGHFSFTSLYCR
LDSATANIRNSGIYTFRAHGMIYHNIRSFGREDGKEPRHLELYFYDDDPSLEHRYRRCREEQYQKDKEVIDRLVAILRDN
PYSQHLRSLGHAEHLEDYRLTLNLDQRLDQRTYNVPMASEVAAVWIEGSELLGQFQNSVVLHGKDRSRHGIRSYHGCYDA
LSYPLFFPRGELGWHMDIPKKGVTMEDVNTARALRKARSGTEEEETGLFIFLYFSCISNHYHMNTSNTIVFADSPGNLCV
SVRDYYCYKFQIRPGIFNPILYGKRLFQQFAVDTYIKIESSRLDYIRNHQTEIRADLYQGLVDSLHAGEGRSEAVGKRTV
MPSSFIGGPRDMRRRYMDAMALVRRFGKPDIFLTMTCNPKWDEITRELYPGQTPQDRPDLIDRVFRAKLEELKHMLLKKD
ILGKVRAHVYVVEFQKRGLPHAHFLLIMDRRYKITCPEQYDLLISAELPNKKKYPDLYKMVTKHMMHGPCGVLNRNCPCT
KGRESCKNRYPRPFCDATLQGKDSYPVYRRRDDGRKEKVRGHELDNRWVVPYNPYLLRLFNCHINVEACGSIKAVKYLFK
YIYKGHDRASVAVREADKEDNEGNIDEIKQYRDARWVTPPEALWRIYGFDISDRSPSVLSLQLHLPDMHMVSFHQREGVR
RVLNRPGVERSMLTAYFEKNNTSEHARGILYRDFPEYYKWDSQGKQWIRRAQKNHLRQIGRVVCANPAEGERYYLRVLLN
HVAGATSFTDLRTVSGELLPTFREAAERRGLIEADNTLHEGLAEATLWMMPYALRRLFATILVFCEPSDVLELWEKHKEA
MSEDYRRNNQSSFAVEQMVLIDIRKLLESMQKDIKMYPLPDIDDTYDPSGDIPREIFEEASVEASIDDMALSKTLNEEQR
AAYNEIMSAVDTDHGGLFFVDGPGGTGKTYLYRALLATIRSQNKIAVATATSGVAASIMPGGRTAHSRFKIPLTLDDGAF
CTFTKQSGTAKLLRTASLIIWDEVTMMKRQGVEALDNSLRDIMDRPNLPFGGKTVVFGGDFRQVLPVVRRGSRAQIVGAS
LRMSYLWNSMRHLKLVRNMRAKSDPWFAEYLLRIGGGSEEANCDGEIHLPDDICIPQTGKDSDLDTLIDCIFPALNANMS
NKSYITSRAILSARNDWVDMINMKMISRFQGDEMVYHSFDSAVDDPHNYYPSEFLNTLTPNGLPPHVLKLKIGCPVILLR
NIDPAGGLCNGTRLVVRGFQRNIIDAEIMVGDHAGKRIFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTINKAQGQTL
PNVGVYLPEPVFSHGQLYVALSRATARSNIRILAVPPSDKNDKKKKTKINGTYTKNIVYKEVLTL
>Helitron-3_AAe_hel#RC/Helitron 212-5349 via genewise with Helitron-2_DVir, 3 introns (669:742, 1984:2042, 2637:2700) [Aedes aegypti]
MEEEANDVPVIPEEDDGDDRYENEDPLLYLTQGEPNLDRADREFDKRFIENEFGYACDVCARIWFQNDLKPISNADGAVL
LAANYFETVEGFSACLTCRSSLKRGLIPTLSQTNGFTYPKFPSNLPPLDPITTRLVSPRICFMQLRRLRHAAGSLAIIGQ
IINVPVDVSAMVKELPRQLDDDCAFNVCIKKHMIHKSSYLSGYVKKGTVKAWLNYLVATPLYRRNGITFSEEHLAAIEPV
QQLGIPQTANTSFDLEVIDASNEVELLIGQQHTLLWNEDKCLEIAPGQNRTPLSIIYDEFAEELSFPDIYLGYPRSFNPE
VRVTPFMMATSEIRRRDRRGAKPEHILFMAMKIMRLRVSEGLKNTFKCMGTANITRAQLQDREFLETCIERNLSFLKSIP
NSIQYWQQRKRDVFAMIRQLGKPTMFLTLSANEIRWPHLLTVLHKLSNGSSDAGVANIMQQLTALQRATLVSEDPVTCCV
YFNKLVNVIMQLLSSTRYSPFGKYYVVDYFKRIEFQHRGSPHAHILLWLANDPREDMSENMPATVQLIDMLCSVRADDLT
ETYGNQVHKHTFTCFKRNDKRCRFNIPYWPMDQTRILLPITTGDGRLDQLRRAAVSMRDALETKAYDSMEAFLVDRNCTY
EYYLDVIRSSIRRPTVMLKRSMSELWTNPFNPWIGKIMRSNMDLQFVLEEFSCAAYVVEYVNKTNRGISSLHRELIKLQE
EHPDHDYNGLLKKVSIKMLNSVEMSAQEAAWYLLRQPMSEASRKVEFIPTMWPHERIKSRKRTKQMDEEELEEDSTDVWT
LNIIQRYEAREGMDEVCLADFAALYTEERRAKNTYKIRRFPRILRWCGYNMSELVEYKREMVLLFLPFRNEVCDVLDRNK
FLMLYEDNEAAILAKHKEYDCELNLDQVVAEYIRLSDEDDVQQEVANKKRDEYVRTISMEPNDDDINNLPNGPMAAVVKQ
RANVMSKQEYCEMVRATNAEQRDLILHIIHSLHSFDDSIKPVQIFFTGPAGCGKTFTLRILMETINRFSQAHNSQNNSYV
ACASTGKAAVAIGGTTVHSAFRITMSRRQSSKLSFESLQLYRNAFANVKAIIIDETSMLGADVLNTVHVRLQEITGNYDD
PFGGMQIVFCGDLRQLPPVNARPVFKPSVNSMHGAVLWQSLEFYPLVQVMRQTNEQFSTILTKIGNGEQLSPDEVVIIES
RFRTAEWCQQHVPRAIRLFHRNVDVERYNSIALVDREAAECTADDIYSGFKDNSQLAGARTKVHKMSVAETGCLPYLLRL
AVGTPYMLTTNVDVEDGIVNGAIGELMFVERDEDDTQQQITRLWIKFENDSIGRMLRVKARPLVYSKPGVLKAEWTPIAK
RSANISLNGGVKCKRVQFPVVSACALTVHKSQGGTFSEVVYNYEKSQEQQLVYVGLSRVTSIEGLYLTNPSNDFKFHHGK
AAVTPRIKDLRTELGRLNNHRLRTIGEDVMATIASNTSAVMLMSINVQSLNAHSLDITTDRVLNAVDLLALSETWMENGT
QTVLAEFDCITQEKRDETRAGGVAIYQNTAASTAAVSHAIDKLSASYDAMLGEADKYGDICAAEISVMGTRTLLFSLYIS
PGMTKTEFVFLIFIINSFLLQAPRSSKRNFSWRVIWSCTAKRPCQSS
>Helitron-2_SP#RC/Helitron 139-8570 via tfasty with Helitron-1_DR_hel, 1 frameshift and 4 stopcodons. [Strongylocentrotus purpuratus]
MENPSQIEHEQMQNEEFEDDWVIVKSRKTKWVEKIKERKLYSKSIDDHQTDRKIRRKSVNGVVLEPGVTYIGKAMKTFYE
SHKKKNGNRKKNVCKENKNVKREDVSLQSYVETLLAIYAYSVQSPCSMKLYSETCVQIETMQTRSWADVAGNLPTQSRTD
SCVDIHACTRNLFEQIKDFRKYRVHAGGKKKEAKNKKGRARNKKGQSSKAGKKGTDGNHSSDKSEIRFDKDEGIELAVKN
EKLDTKKSMNASDQGLDPNTCKNDEHSDQHICNMKDNKGSDGVVQDDSKNNLLKSNFDENREIETDDDSGSDVHIPVKRS
CARNCIESDSDTDTSPGCDLFDRSVLPERNMPLNVCDRPKDMPRNEPVDNVCESVLENDDMMKNDFSDVSDGVEEDAVFD
NDLKNRSFDTVKDGTDNDTDMSFNDHAHSRNPLESSSDSNIKDEDIEKAIDANMYTCTDETETEVEFVADLGLRDRPDKD
FKFVPLQNNDKQNICSKLNIRYIGKGCDSRLDRNSCIGVPLQSKQITGDGNCFFRAISYVISGTERNHAILRNATVKHLL
QTKDMFSNTLRQEYRTVREYVLKRRIKEDGTWATDTEISALANLIDTDIYSYNDQVPCWQLFSAKKPGRINIVTSDKGIY
ILYTGNVHFNVVESVDFVNFNSLEQTRTTKEDRTSKRTLPCPSIQADVKVKHVLKKCRSKSQIEEEIDEVVDKSPETFQN
HVDPKGKKRRLTLETGTINHDERKGTANLLDMTYEQCASNQSESVVHNERNTKDETLESDHKDKCTRVDTQITLVAQGTF
NQGDTRFGDLSGKQCVTNSLSALLYSKVKNANDWKSTDLDRILNNGNELYCYIRRSTSLDNQYLLISDLFEYLDAYNELF
NIVCREPVTGLLDGDELILAQSLSMTLKQALEKELCTDSDACFVTFARSTFIVLSGQDGFFIFDSHSRSSRGFLSCNGHS
VVLRTQSWQGVYKHCMRLAKSMGCPLHTEYEVTSVCAKATSGKNETLKGYPQLQDFVCNPIPSSNTHSESQSGSSGCSIH
CESFDEVQILDESVSPQKMIDNPNVFLFPEEANETIIHDVHYNGQELKLKSVTITLTKLKEPQLNNSCLLKGNDSIKTEY
ENEQKGDSKNCTKCGNDSDRLNLVNKVQNSNSILSRKRKWSNLESDAKVDVDLGKEIRKTKLVKMNENDSLRIDASECAD
SNDELIIIGEVHVRNVDHGKKKRKNRQSSNQIRKRSRQQMREKRALTKDEIIKKKEKCIHNAQMRKIKTKNKYQNDLTYK
MEKINEVKQRQKENYNTDLSHKIKQGAYVKQRQKEMYKEDSNFRNIQLNIMKTKYHSDLHYKKKILYRNKQKYLRNEGFK
ENVKTAMRTKMKNKYWNDEQFKRMHKSKIRSKYQHDEQFKRMHKSKIRSKYQHDEQFKEKQQDTMKKRIKELYRNNEHFK
EKQRDTMKKQIKELYCNDENFKEKQQDTxKNExRNYIAKIKISQKTTRKKQIKELYSNDENFKEKQQDTMKKQMKELYRN
DQQFKHTKKANMKTLSKIRYKGKEFKEKKLMSLKMKYKRIEKYRQNVIKQNRKRSVLRTVKLSEFDIVLEEFRKIISHGP
EYVCCVCLKLLFENQVLKCKKSNYKIQTCISEEYLHVCNSECRSKCLIGQSARSSLWICFTCHRKLQAGKVPAEANMNNL
QLHEVPEELANLNNLEQHLIALNIPFMKLMALPKGGQNGVHGPVVCVPSNTYETVDMLPRPQTEDQLIRVKLKRKLSYKS
YYEYKFVDKSNLLNALQYLKANNKWYFDVTVNDKWENSLERNEKDNEKEEAVEIGGKARLAKYWKEMEEQIDYILSKDKN
ANENMQDNSKLQQKIDDNDTEDDMEERLRGIQLDSCLQPVDIGQEILDQYFEDIICCAPCEGRSPVSILQDESNEAKCFP
VLFPKGQPTFHDRRDEKITLGRYLHNRLMHVDNRFAQNTDYIFYAQYIYEIQQVISQVSIALRQSPNKKDDSSSITASDL
KDAEKVKKILKSDKGYKFLKQIRGTPPFWQKTQKDVLAMVRQLGKPTWFASFSSADMRWPELMNTLLRQKGDTRESSELD
YTEKCNLLRSNPVTVARMFDKRFHTFMKKVILSPAAPIGKVVDSFWRVEYQARGSPHIHALFWVQNAPQLGIDNDDDVVQ
FVDKYISCQKPDEKEDQELHEIVSKVQQHSKKHSKSCTKTGKACRFNFPRPPSEKTFIVTPVEEIPAKDCGKVQNKGKDN
DQVKASEKTKDDAEKLLKSVKDALSNGIEYNSVNHLFEKLGITQNQFENAHNELASQQSIIIKREIQDVWVNQFNPSLLR
SWNANMDLQFVTNVFACVAYIVSYMSKAEREIGMLLSHTLSEMKEGNENAKESMKKLGQVYMQNREVSAQESVYRVCSLR
LKECSRKVEFIPVGPDPVRMSLPLSVIKSRPDNDNDDDENVWMPSKLDRYKARPKNAEFGDMCLATFCSQYRILTASQTP
STRSKNVFKLDNDLGYIQKRTRTGDAVVRYPRFSPIISPEKYYLSILQLFLPYFEDGQLKPPTFETHEEFYETGSVKICG
RELEKVWSIVCTNRKKFEMNADAIDHAQEHLDKFGPHEDAWALLCPEKEVERLEHPKEMxMSKIVMEILISQIxNEPKKD
DYSIELRSVKISKQDGHSLMRSLNEKQQSVFYKIRQWCLDRVNGKSVEPFHMFLTGGAGTGKSHLIKCLYYEATRILARM
LPHPDDVSVLKMAPTGVAAYNINGHTIHSILSIPINAQVLYQPLSDEKISVLRNKLAELQILIIDEVSMVDQKMMSYIHG
RLRQIKQSRDQ
>Helitron-2_AC_hel#RC/Helitron 233-4693 [Anolis carolinensis]
MPRRKSNLGRHTRQRRAQRLAISQQTEIERTATKQRKKHTTALLYTNEDTEHRAKRLQEARLSADHDRAKTKEKKRKQQL
ATLRNTRQQMRTQQTNKYHCIAFQYNPTEDYNSAHPVHIGNLTTICPHCNAMKFPGETKGMCCAAGKVRLPQLEPPPEPL
HSLLAGESPESKHFLTNIRRYNSCFQMTSFKANIITAPFMPTFKIQGQIYHNAGSLLPYNEGQHKFLQLYFIGDEEQQVT
RRCSISDAVHTNIVKQLQKLLLERNHLIRLFRTALDMMPTDTHKLIIHPEKTPTGQHQRRYNAPTVDEVAIVIVGDQFQP
RDIILHRRNNQLTTVSETHRCYDALQYPIIFWDGADGYHINIKMVNPITGAETDNKCSAMNYYAYRIMIREHNTNHILQC
RQLFHQYIVDMYAKIESERLQYIRFNQSKLRSEEYIHLRDAAKHDGHTKQIGKLTILPSSYTGSPRHMHSYAQDAITYVR
QYGRPDLFITFTCNPSWNIIHQLLLPGQTPVDRHDITARVFRQKLKSMMAFMVKHEVFGKVRCWMYSVEWQKRGLPHAHI
LIWLYQKITSNEIDKVISAEIPDPKVDQELHDIVTKNMIHGPCGVLNPKSPCMKDGKCTKRYPRTLIPNTITGNDGYPLY
RRRSPEHGGHVTTIRMHKEDIQVDNRWIVPYSPLLCKTYKAHINVEYCNSVKSIKYICKYINKGSDMAVFAMEPKDTSET
IDIDEISQYQAGRYISSNEAIWRILMFPIHERSPPVVHLAVHLENGQRVYFTEATLQQVAENPPPTTLTSFFTLCQTDPF
ARTLLYSEVPTYYTWDPTRKNFARRKRGEPVEGQTGVFKDNTIGRLYTVHPRQDECFFLRLLLVNVRGPTSFQQLKTVNG
ITYDTFRGACQALNLLENDQHWDECINDACQTSHPKQIRALFVIILTSCSPSSPTQLWEKYKSYMAEDIFHLIHRQNTEI
DEEKSKQIYNEVLIRIEDACLQVAHKLLEQLGMPTPNRTSPPTFEVEMQQELNYNTEEQRTYVQSNTPKLTDEQRSVYNR
IINTVENENGEIFFLDAPGGTGKTFLIRLILATIRSQNNIALALASSGIAATLLPGGRTAHSALKLPLNIQHIETPICNI
SKTSSMGKVLQKSKIIIWDECTMAHKKSLEALHRTLQDLRGNKGPFGNATILLAGDFRQTLPIIPRSTPADEINACLKYS
TLWQYVKTLKLTTNMRVQLQQDCTADIFTNQLLDIGNGQLPIDQTTGRITLPPNFCTIVTSKEQLIQKVFPNIQNNYTNE
NWLSERAILAPKNVDVYAINHTILSTIPNEILIYKSIDTVVEADEAIHYPTEFLNSLDLPGLPPHILKLKLGVPIIMLRN
INPPKLCNGTRLAVKNLLKNVIEARIITGPFKGEDVLIPRIPMIPTDMPFQFSRLQFPIRLAFAMTINKAQGQTLQVCGI
NLDTECFSHGQLYVACSRVGKPQNLYINAHNGTTKNIVYPQALGQNI
>YAMATO_BM#LTR/Pao 119-2313 via tfasty with AGM1_1900-5610, 2 frameshifts and 2 stopcodons. (has an internal deletion)  [Bombyx mori]
MRTGRRDQPVASRTPLGWVVHGARPGGKRQRVNFVGHATTADANMDEALKHYVAIEGLNVAAKTPKNDPDERALKILRET
TQQQPDGRYETALLWREESLKMPNNLEAAMNRLTSVEKKLEKDPNLKERYKQRTNALVAKGYAEVTPSTGTKDRTRYLPH
FDVTHPKKQEKIRVVHDADAKNRGKSPNDILLTDPDLLQSLPGAMMRFRQHAVAVSTDIAEMFVQIGVRSEDRDALRYLW
REDPSREPTEYRMRSIIFGATSSPATAICVKNRLQYPDAADLKLHTxVDTNKYAHDAALYWRVETPDGEMRTSLAKARVA
PMKPTSILRLELQADVMGSRIAAAVTEKHYRKPDTRFWTDSATIEENSTVEERRxVPTRENVADDATREIPVGFDGNHRW
FIGPEYLRRHPDDRPVQRTARRAEETGEEKCAMLAVSRESLGEAIPDPRRFSKWEKYLRATGRILQFVDLCRRSRERTHY
KRTRRNPRSDPTWEKNRKKTTSKTPLNTPRTPEQAVIQWKTLDADTLRRAETLIWRQSQRAAFEEEILTLQRGKQISPAS
RLRNLSVTYADGILKINGRIGNIEGADVITSPLVLDGSRRETRLMIDFIHRKMHHAGTEATIAECRQSYWVLRLRPVTRS
VIHNCLPCRIRKDTPPRPATGDHPPSRLAHHRRPFTYVGLDYFGPYQVTTGRSTQKHYVAIFTCLTTRAVHLEPAASLST
DSAVMARREDF
>TRAM#LTR/Pao 498-2705 via tfasty with BEL11_AG, 1 stopcodon. (fragment) [Drosophila fruit fly genus]
KSLPELDEAELQARLEQIERMNADFDAAQTSLERLDFLQLAHDARLDFSNVYVKVRSRLSRELMAARTVNVANxTARHTL
EGNSSLFAYNSIGRSRMPELQLPRFGGNYMDWPEFHSMFSTMVHKDHRIPIIEKFQYLRGCLDGAALDTIRSLELSEENY
DKALNLLMLRFDNKLLHFQAHVKAIFGLQGVEKGSAIGLRALRHKINSHLRALQTLATPQEISDGLLIFIIGTKLDHKTK
EKWDENLPTSGLPRWSSMASFLEARCRMLENLGSAMATSPSQQVGEDKPVTLITSSNDHPNPICNHCNSSEHYISRCQAF
LNLSAFERHKEAKKSRLCLNCLNKGHELQRCRSGLCRHCQAKHHTLLHIPSGTGASSSSSPAEESIQQEAATVLLASGCS
SPPPSIQKSQPSQNVLLPTALVHVTDRYGALISCRAILDSASQANFVTSRLADQLQLDHRSSYVHISGIGDSILPSSKSV
HIVVQSQDASYRASFAAIVTNSITEMQPNFGLDAKDWPMPNNLKLADPNFSKPQRIDLLIGSGLFFDLMCVGQIRLSAQL
PTLQETKLGWIVSGSIDSSENKRAALAAFENSSCISIDDFRPTTLEYQNLEQQCRKQLLECQVQVEKLRSENQELQRELF
HILKTYISTLNEIQLSTISTLPNFLPFYTNTEVPDDQDVITTSRLRKEAPISRFDDHSSVAASCAQASIFKRAVGKLAVL
PLQDGSVESLCLPTGG
>Helitron5_rpa#RC/Helitron ATRPA5Hp; multiple exons [Arabidopsis]
MAATFAYLKDVRPYTTAWRVQVKVLHSWKQYTQKTGETLELIFSDEQNKKIHATIRTDLVSKHVNKLTVGQWVFVEIFTL
NYAGGQFWPTNHLYKMTFTNGTTVMGSDPVSDSIDERIGCTLWGTFAEQIFRACQDSNRGMVICILRFVKIKSYKGVRTL
SNSFDVTQVHVNPPSSEAVFFQQALPSDGLSLISRERQPRWEMVVNKDVDWLDYLRNSISDLKCSIEIGKARVLCTIYAI
DTDWAWYYISCKTCNKKVNHIHAGVHGVNNKGKKPRFWCDTCKTVVTNVIPRYMLYANVMDNTGEAKFLLFDSICSELTG
ESATSVLDGSLDEVVDPENLPEPVKNLIGKTFLFLVWVEKEHISDGKEVYKVWKVLCKGGLLEEQLLEYSADIVNPASIE
SADQPQLMLENSHDTSDFGTPSSKRIYANPDEFGPTSEHAQLGDPSVKDGDPSLRSSNQYEKKNVVVRVKVEKKECC
>Helitron-1_DBp#RC/Helitron 289-5055 via tfasty with Helitron-1_DYak, 6 frameshifts and 2 stopcodons. [Drosophila bipectinata]
MPRVSXSSQEQRRQAALSRSRARYERNASQIRTRNSQHIANVRDNNPNLREESRAQDSAARAQRRRSERVRNLERIRDAQ
AHSTRREDSEERRREQLRNTAEHATRRTIPELRILNAFGTWPQRAIVERTPRSDGESSVRNAAEHATRGQDYSGFXIPER
IRDAEARATRREDSEERRREQLRNTAEHSTRRTIPEFRIPERIRDADARAIRREDPEERRREQLRNTAEHSTRRTIPEFR
IPERVRDADARAIRREDPEERRREQVRNTAEHASRRTIRNFEFQGRIRDAAARAAHREDSEERAREQERNTEDHRQRRRD
SEDRQRERERDADNRRATRRNPIARTQEQRINTSQRRETRQQRRIREEQIRQMAEDRLINFRMDPQNRLDASQRQSQRNM
DARAQLSEDELDQEREQQRNRIRATARDLYHRNIKEGPTEICICCGGTWFRSQVSGLYILAISSKFPLLNVGNAFYLSRK
FPSPSGKYNFCRTCRRAISLGKLPSLCLSNGFDFPEIPECLNGLTCLEERLISPRIPFMRIISLGYERQCGIRGAVVNVP
ISVPDIVTALPRSFDSTHVIQVHLKRRLEYAHNFMTETIRPARVLEAVRYLVNTELYRKHNISLNESWLAGLQGINEIPF
IADERDREAVEQLLQQQHLSQNAAELEENLNPGGHETLSENNDTAIQRIALAPGEGRRPTSLTLDEDAEELSFPTISCGE
IFKGXTTYAKKARSQIRFYDRRCAVVPKVLYMYKFYEMQRIQNSISIALRKKSGAVTAGNLRDESFVDRLVQHDDGYHIL
KGLRSAPAHWEAEKKVIAMIRQFGLPTFFITLSAAETKWNELLVILSLLLDNRAISEEEAAALSSSEKARLIRSDPVTCS
RYFDYRLRQLMKLFKTDIFGEFNLSHFYWRIEFQHRGSPHSRGVYWLAGAPKLEDAENTEQVINFIDRFITTNGDDPELQ
EVIQYQRHKHSASCLRELRGQEFCRFNMPYPPMPETLILHPIEENEVNVKEHKTLFKKIKEALRTISNEDAALYNNFDYF
LTHLETNFEAYKLALRSSLKKPQIFLRRQFSDRSLNAYNRDILGLHRANTDIQFILDAYACCSYIINYINKSNRGVSQLL
REAMAEISHGNISIKRKLQHLGNKFINATEISAQEAAYNILGLHMSEASEGTIFINTCHPDKRVRLXRSNEELERLPNNS
VDIFERNILGRYVQRHEQLEGICLADFAAWYRFVKRNARSAANHREDYDEANDVEVDDEDEVAEQSYPLMDGSGCVKKRR
HPLILRWVRFSINSSPSDYFREHLMLFYPWRNEEAELLSNDIEDYFRANHEAIKAKKRNYDVXDDMDWKEFXKICKRIGE
XMLLLRNEPASQFSDEEFRALAVPNIERNVNILHYDDAVNNPEEDGELHxLDSPCxFPTMTFAANSVPQXQAKTILCTCM
HNVVCKNIFYEYVGGGAGVGKSRLVSTIYQSVTWRANKLPGATDSAKVCAPGKAAFGIGGLTLHSVFSLPINQASGPLRP
LSNDSLNTIHSQLIDLQLIIIDEIXMVGSKMLSFLDSRLRQIFRSPDLSFGGISIIVFGDLKQLSPVGDSW
>Helitron-1_AMi_1p#RC/Helitron 1299..4217[Crocodylidae]
MAASRATETPAQQVANRAAMAAARNRPWREKENSAFFYNPALDYGSDPLVAIGSMATSCSHCLAMRWKGEAPGICCNSGK
VQLPQMNDPPEPLHTLLTGNTPDARHFQSNIRRYNSCFQMTSFGTTKDIRESGYMPTFKVQGQVYHRIGSLMPLPNEEPK
FLQIYFMGDNTKQAEQRCNNVIQTNLRVVLQLQDMLHKENNYVHSFKCAMEKMTPEYNVVIHADKTPAGEHERRFNAPTT
SEVAVILAGEQHGNRDIVLQLRNNSLQRIAETHRSYDALQYPLIFWQGDDGYHFELRQTNPATGLPTQKKISAMDFYAYR
MMLRARSFNHILRCKDLFHQFAVDMYAKIEAERLRFIRMNQKKLRVENYVHLRDAMNNDGDAANVGQLVILPSSFTGGPR
YMHERTQDAMTYVRNYGRPDLFITFTCNPAWASSFWMLQVELGKLFSSIFFWPKSGRQTGLPLQWHHQALLPHCSLHYLH
LQPSLGIFFLDAPGGTGKTFLLNLLLAKIRQTNRIALAVASSGIAATLLTGGRTAHSAFKLPLNLASAEAPTCNIARGTG
KAKVLQECQLIVWDECTMSHKAALEALDRTLQDLRHNDKTMGGVTLVLAGDFRQTLPVIPHGTKADELQACLKASYIWKN
IQRLSLMTNMRVHLTGDASAGEFAASLLKLGNGAMVSENQDGTISMNNIGKTVATLQELKEAVFPNVAHHFHDHKWLCQR
AILAPKNDAVNTINKDLLSQLPGTVQKYKSVDTVPDTNEAVNYPTEFLNSLEPPGVPSHNLELKIGAPIILLRNLDPPAL
CNGTRLAVKKLMPHVIEATIMTGHAAGQDVFIPRIPIVPSDLPFQFKRLQFPIRLSFAMSINKAQGQSLKVVGLNLRSPC
FSHGQLYVGCSRVGNGKNLFILAPDGKTCNIVYPEALHG
>DrNGARO1_yr#LTR/Ngaro [Danio rerio]
LSFSFFLPEISAVGPRSGSTSYSHPSIFRDDIALNHPMHNLHQASISLILEAVAPRTIQTYLTAWSAFKKFHTQYNTSFP
NFSLLTITSFITYLHTSKNIQASTIKSYLSGINFFHKLIHGSPAESISNPQTGLLIKGIQKVHPSPPDPRLPITQRVLSK
CISTLRKGYISTNTDRTLDAMFNLAFFGFLRCSEFTITSKFDPYIHPTISDLTLLDEGTLSFLIKQSKTDQTRKGHFIYI
FDLPSPTLPFQTLKAFLLFRKTQNPSPFSPLFVDDSNRPASRFWFQRHLKAVLSLSGFPSDSYSSHSFRIGAATTASQKG
LSQQQIQTLGRWSSDAFKAYIRLSQRHLRDAQRTLASHQPTSIQGRGHDPATFPSSFPSFy
>Gypsy-47_STu#LTR/Gypsy 463-5678 via tfasty with Gypsy-32_ST, 1 frameshift. [Solanum tuberosum]
MQMLTARGLFSGLASEDPHGHMAKLRSVCKSCVGRPELDMDVIGLRVFPLSLTGDAAVWFSELPYNSIHTWDQLHKVFMA
KYFPVSKKLNHKDKLNNFVALPGESVSSSWDRFTAFIRSVLNHRIDDESLKEYFYRGQDDNGKVVLDTIAGGSYGECTFE
EIAEKLEKISRNNKAWSTRKANTGRSTFAVQAAPNQSNDDIREEMAQMRTKLGLVLKHVSGGAEKVNAVNYLTRTPPPPV
EECYYEEDAYLVNDQTGGFRANAQGSNSDNWRQGQGNQGRNYGNYNREGNYVRDGNYNRDNNYNRNNYGNRNERVGPYVP
PANGNLVIEKLVRSMSRIEDMMQKMMKRFDATDENVKEMRNDLSGIGQKVDAHAVSIKQLEQQFSQLSTTVNPRQPGTLP
SNTIQNPKNDGHCMAVTTRGGKQTIDPPMPSEVEIVVERDEDEIEVTGESKNATEKEAEVTQKVVPMPRPPPPFPQRLVK
KTEEGKYRRFITMLKQLSINVPLIEALEQMPGYAKFMKDLVTKKRAVSFENDERLQHCSAIATRSLVQKKEDPGAFTIPC
TIGLLHFAKALCDLGASINLMPLSIYKKLGLGAPKPTAMRLLMADRTVKKPIGVLQDVLVKVESFIFPADFVILDCEVDF
EVPIILGRPFLATGRALVDMERGQMKFRLNNEEVTFNICRSMKQESDLKSVSVVNHIVERGSEVSIEERLGVDALAAVMM
NFEGDGIEDYDELVAALDRFEFRSKPKRLELDMKNRDSPPAKPSVEEAPKLELKALPSHLRYVFLGRDGTLPVIIAADLS
EVQVEALVSVLKRFKRAIGWTIADIIGIPPGICSHKIQLMPDSKPSIEHQRRLNPPMQEVVKKEIIKWLDAGVIYPIADS
SWVCPVQCVPKKGGITVVPNAKNELVPMRPVTGWRVCMDYRKLNAWTEKDHFPMPFMDQMLDRLAGKGWYCFLDGYSGYN
QISIAPEDQEKTTFTCPYGTFAFKRMPFGLCNAPATFQRCMMSIFSDMVEDTIEVFMDDFSVVGDSFDGCLMHLAEVLKR
CEECNLVLNWEKCHFMVKEGIVLGHRISEKGIEVDRAKVEVIEKLPPPISVKGVRSFLGHAGFYRRFIKDFSKIAHPLCK
LLEKECKFDFDDACLRAFGELKAKLVSAPIIISPDWGQPFEVMCDASGVALGVVLGQRREKILHPIYYASKALNVAQKNY
TVTEQELLAVVFAFEKFRSYLLGTKVIVHTDHSALRYLMAKKDAKPRLIRWVLLLQEFDFEVKDRKGTENQVADHLSRLE
EEAMLKLGDGAEINDAFPDEQVLAASYDLIPWFADFANYLASDLVPSDLSFHQRKKFMHDVKKFFWDEPYLFRICADGII
RRCVPEVEMMSILEACHSSPVGGHHSGIRTAHKILQCGYYWPTIHQDAHDFAKSCDRCQREGGISKKQELPMNPILVIEL
FDVWGLDFMGPFVSSHGMKYILVAVDYVSKWVEAIALSNNEGKSVTAFLKKSIFSRFGTPRAIISDGGSHFCNKLFKALL
EKYGVRHNVATPYHPQSSGQVEVSNREIKQILAKTVNANRTDWSRRLDDALWAYRTAFKTPIGMSPYQLVYGKSCHLPVE
LEHKAMWALKKLNLDWGAASSQRLNDMNELDEFRLKAYESSALYKEKMKKYHDQKIEKREFVVGDLVLLFNSRLRLFPGK
LKSKWTGPFRVTQVFPHGAVELENKEGTRFKVNGQRIKVYMGKSESVQEVIEAYYLDEV
>Gypsy-42_DAn#LTR/Gypsy 648-4038  [Drosophila ananassae]
MAENIIKPFLCENLEKSVLRREWENWLRAFQIYLEVDEIKSTTRKRTKLLHLGGIQLQTVAYALPGAIVEYDEEDDNDVF
ATLVDKLTIYFSPKQNSTFERHLFRKISPDEGEDFGKFILRLRQQIRKCSFGSTKAEMEEICLKDKIIDTWASSELKKKL
LGKEHTLGEVIEACQVDEEISKQSRLMLSXPVPETINKISDWKTRQSNNGDCGRCGRSGHKEDSPACPARLSKCNRCSRX
GHFGRKCRTVLKRPYPQSYVNLISQDDWMDLQSRKATVFNVRTETQNQFKGYASDTILNVTCVFEAPIGIRPGSELIASF
FVIGKGRQSLLGRETATKLNVLRVGLPVNHIEEVTSFPKWKGISVKLSIDPHVYPVKQPLRRIPVALEDKVNAKLEEARK
LDIIEPVSGPSPWISPVVIAFKENGEIRLCLDMRQANRAIRRENYPLPTFETFMTRLRDAKLFSRLDLKDAYHQLELEES
SRQITTFITHRGSFRYKRLMFGINAAPEIFQRRLEGLLAPCSNVMNYIDDIIIFGKNEKEHDEAVRMVREIFGKYNVLLN
NKKCVWKTNKIKFLGHILTDKGIQVDPEKISAIGSFRAPRNKEETRSFLGLVTYVGKFIPDLADLTEPLRLLLKKDQKFI
WGAAEEKGFHKLKLALTKIPSLSYFDPKYKTRLIADASPVALGAVLLQFKNDLTPNIIAFASRSLTDVEKRYSQTEKESL
ALVWAVERFYFYLMGLKFELVTDHKPLEAIFKPTSKPPARIERWLLRLQAYHFKIIYKXGKENIADCLSRLCEGGPSISY
DIKGEHSILRVIENAAXTLIAXSEIAEKSAKDEEIVDAMMCLQQGSWEPATSNKLYPFRHELTNIGTIMLRGVRIVIPTT
LRRTVLVLAHEGHPGESAMKRRLRTKVWWPQIDMDTEKFVKDCLDCILVSQAISPPPMKRTEFPNGPWLSVATDLLGPFP
NNEYILVLIDYYSRYMEFKFLRSITSQNNFSADSAEKDRDCVNKEKGREMADKRRGAKEVNVNVGDKVVLKNVVFPHKLT
PNFDTTEYEVVKRTGDLVQVVGEGRTLMRNVSHLKKVPKAKESPEDIDTNSVTDPAADQVSVSVPTKQQTPGRKDESNPE
GLKLKLVRKEG
>Gypsy-50_BG_pol#LTR/Gypsy 1525-5598 [Blumeria graminis]
KNCDRRGKSLVPDNSRYQGPEESKSQKNPNVPNIEVKCINEEKTSQLLSLSTPHNDHLLLSCTIASNKISFQTLAFLDCG
ATDEFYDLNSAQKKGLPINPLSQPRQLYLADGKLATQITHSTTIHLDIFGHKETITLFLTNIGKYDLILGRKWLRKHNPA
IDWSKDVVNLNSYYCKENCLPAQLDHITITSKEQGNGRPRKIGAAAFQTLSKQKGVEIFSLSLYEVDTRLKEVGATSTPS
PTIQPPFQTPTNLTPIQKMQQELCRQMEDFPNNSQWQKTATDMHLSGFSLEDIQIALQTKDHPDPSKKLPLHYHQHLAVF
DHKGADTLPPHRSCDHKIELKPGTTPPHGPLYNMSIEELKVLRKYLNEQLDKGFIRASRSPAAAPVLFAKKPGGGLRFCV
DYRGLNAITIKNRYSLPLLQETLARLSNAKFYSKLDIIAAFNHIQIAEGQEWMTAFNTRYGLFETLVMPFGLSNAPATFQ
ARINEILRPFLDIFCTAYIDDILIYSDDLLTHRTHVNTVLQALQDAGLHCDIKKCEFEVQEVTYLGMIISTTGVKMDPKK
IQCIVDWESPSCLKDVQGFLGFSNFYRRFIKDFSKIVRPLVALTCKDVKFVWSEACQNAFQLLRNSFISAPALRHFDASK
EIFVETDSSDFVSAGILSQKDDNGELHPVAFMSKKFENSECNYEIYDKELLAIVRCFEGWRAELQGSYYPITVTTDHRNL
EYFMTTKELSRRQVRWSEFLSQFDFVIKSRPGKDNAKADSLTRRSQDLPKNNSDPQLLHQKQVLLPSHKLHQSVIQDLQE
KTDNPPNPICNASYLSSEIVHRPKEEPLDCKIARLLEEGYTDKKDKWLAEVVTELTKPEGVPHSKEISLSECEFREGRLY
FRDRLYVPDNELRLLLIQKTHDSCEKGHPGKNALYQAVSDHYWWPNLSQQTDQFVRNCHNCIRNKVSRLRYQGTLKPLPL
PDQRWRDISVDFVGPLTKFNNFNCIMVVIDRLTKERHYIPCHTKMKAKDLAKIFVRNVWRLHGLCDSIVSDRGPLFVAEF
WKAVCHHLQINVSLSTSYHPETDGQTENANAFMEQYLRQYIDYSQEDVYEWLPMAEFAANNAVNASTQISPFFANKGFHP
RMSFGPPRPISRTDSKHLREQIAGGNNFASKMAGVLDVLRSNLARARERQEKASSANRSPAPAYRVGDEVFLDTRNITTS
RPIKKLDCKFIGPFRVTKIVNSHAYQLELPFKHENLHNVFHTSLLRPAPTNPLPGQTNPPPPPIALDVSGEKLFAIEAIV
DSKQRKNKKXFYYLILWCGHDPDDQKWEPLENVVNATSSIQEFERRFPNKLKPTKREIETAKKNARYSTKMLSSDAKE
>Gypsy-57_DEl_gag#LTR/Gypsy 219-1232  [Drosophila elegans]
MPGEPRYNLRSLVPRKLIFESDENMPDEQQQLQTRIRELQAQVEALQMNSTAGQAANTGPMARATVRLPKFTSSNPQLWF
AQVERSFRLHGVNNDDDKFDHITVNLDPEVVLAVEDLVTHPPVANKFDTLKARLLDKFAESAESKLRRLLQGGGTSGLKP
SQILAHMRRLAPESSSEPIIRTLFLSEMPQNIRPILTVWEETDLEKLAKVADKMLETIGSSNTFAISADDVAGTASVNAV
ARPESIKDIADSLRALTKKVDTMQADLKRIQSSNRSASQTRGSFHRSASQQRSQSATVSDGPLQQPGDPQAEPCYYHRRF
GNDARKCKSPCSLAHLLN
>Gypsy-52_BG_gag#LTR/Gypsy 139-1818 [Blumeria graminis]
MASNSQNSQIVTAFRQSWPNLITAVEGYQFPEDLNPVPLLSAIASTTSNPEKVMFCSLLSCFDSGFGALKAQLDARETRI
SELNVELTQLRHQTAEQQSSIGLAHQEVLNLNQTITTKNQQLDSRLTDISNLNTRVAKLNAQRSVDIDRVSQLNDQIIKL
NSEKNDLHTKVNLLDIKTSTIKDGESSIPRRSRSDPEKFSGLQQDTEKRQVMYERWKTQMQQVLLIDEKCFPDCFHQISY
ITSQLTGKAWDAVQDGVRIMNFYPGDTKQWPWETSAILWQVLDNRYILLDSTQSAKNALDTLSQDRRAYGDFKADFDHYA
ERAKYDDRTKVDMLRKRLNKKFSSVIDNQVILPRADDYAGWSEMVNNIARNLQQQDHIAKLQTPNIVHQNENNSSINLPS
ADFGDPMDLSRMKLSSAERKHRIENGLCVACGEKGHYSKDHHRKFDPIPMPKRGTNQSMPGGPNNRPQPVTPNPRTLYSK
RSFPLFNPQPVQMPNMYYNSMQPFPQQFSHNFQPQYFHTSIPSRIRALDDSNFDTESKDFKNNDNPIPIYEQELKDKPLP
>Gypsy-42_BG#LTR/Gypsy 668-1535 via tfasty with Gypsy-49_BG_gag, 1 frameshift. (fragment) [Blumeria graminis]
TLIRNSPNNPPTPPASHLSPEKFDGTRSKFGSYITQLQLQFRSNPGAFITEESRILYAGSFLTGNAYTWFEPHVDQTSGN
VDFRTFAEFHESLRAAFDDPDAYATSERQLEALRQETSCAAYYARMVSLFSLLGWAEPRVQIHYFRRGLKDDLKDALVGK
KMPTTFPEFASECIALDNEIFARTQERRSGSSPSSQSITQPRTPRANPSQTTSSGDPMELDNSEAGKAARKAYRRANNLC
MYCGKPGHIVAKCSVLAHARQEQTRVMNAEMVEAEVLAQDYAKIPKN
>Gypsy-37_DEl_gag#LTR/Gypsy 789-2156  [Drosophila elegans]
MSFLSYRDPRQHSDSESDSERLPITSTPRQAATGADPNTNMAINADQLQAVIQAAIANALIEKAGEDQRRENEMRKTIEN
LAKQVAETRVSPAQIGTPQIKIYEPIDIKNNVQCNEPLDAVKCLPEFTGAQETYVSWRQAAVAAYYIFKNYIDSSRHYQA
VVIIRSKIRGPADAVLSSFGTVLNFDAIIDRLDFTYSDKRQIHVIEQEMGTLRQGSLTLLQYYDEVEKKLTLLTNKATMS
YEASAARILCEKFRGDALRIFISGLKRSLSDVLFSAKPKDMPTALALAQEVESNHERYTFATSFAKSLEDRDRKQFPKAQ
DRQQNSYQAHPQVSAGKNPHFTKQHKAQVHSAPHNDRRHENTPEPMEVDPSMSRMLKPSQAPAYQNRKPAESGRSGPHKR
QRVNHIAQGAGEINEQYTAAASSAAQEINDDAIHEYDSDAINFLGESPCYLSSDEE
>Gypsy-33_PT#LTR/Gypsy 78-4398 via tfasty with Gypsy20-PTR, 1 frameshift and 6 stopcodons. [Populus trichocarpa]
MANEDAPGTRFNVLSETVSKQGSMLQQINTHVTDIQQQITALTLSIEKLTKEPKSVREEHSVGPSIRHSLASNSSGLLTK
GLKIDLFKYDGTEDPSGWTLLADQYFLLHQIPPAQRLLYASFHLKEQQYYKYLQHAGELNDWVSFIQALEKRFGPTEYED
PEGELSKLRQTSTVVAYQSQFENLAQRIDGLPDRFLTRTFISGLKDDIKTNVKSFRPTSLKDAIGLARLQEKSSSRDRRS
FPRPQAPTQTVSDPKVKKISFEEMKERREKGLCYNYDEKFRPGHKCKSLTLFLIDGNDYCDEDMDCSPDSDAIPHPEISL
HAIAGATNPETMRVTGYYHNKPLYILLDSGSTHNFLDPSVASKLNLPISCKTSFDVMVANGDRLYSEGQCQNIFIAIQGV
PVTSDFYLLSLGGYDAVLGAHWLQTLGPILWDFSKLTMEFCYQGKTYRLAGIPTKELSVLSCHKLEKLFRVRPPSLILDV
SQIYAIDNVYQVPPTIQAVIDNFSDMFCPPSGLPSTRYHDHRIILPPGTSPTNVRPYRYLMLxKAEIERMVKEMLHEGII
HPNRSPFSSPVLLVRKHDGTWRLCVDYRALNAVTVKDRFRIPVVDELLDEPHGATIFSKLDLRSGFHQIRIADEDIPKTA
FRTHDGHYEFLVMPFGLTNTPSTFQSLMNEIFCPFLRQFILVFFNDILVYSCSEEDHVIHLQKTLEILRLHKLHAKLSKC
RFGCCEIDYLGHVISANGVAVDQKKIESILQWPFPSSLKSLRGFLGLTGYYKKFVHGYGQIARPLIDMLKKGAFQWTPTS
ESAFKELKMAMTSPPVLALPDFSKNFVIECDASGSGIGAVLMQSGCPLAYFSxALHGKNLQLSTYEKELLALTLVVQxWR
PYLLGSSFIVRTNHHSLKYLLEQRVGTPSQQRWLSKLLGYDYIVEYRKGSLNVVADALSRRDPDVGIHSISQLEPSWIEA
IDNMAHTDPDIIGKLQSYTNGQLDQSKFSVHNGRVFYKGKLYIGADSSFRNLILKELHSSPVGGHSGFLQTLQRIRQNFY
WPNMRSFIKxYIQECETYQRNKSENVHPAGLLQPLPVPHQIWEDISMDFIDGLPKSSGKNVIFVVVDRLSKYAHFIAMSH
PYTASSIAQAFFDNVFKFHGMPKTIVSDHDRVFLSDFWQQLFKLQGTSLHFSSSYHPQTDGQTEVINRCLQTYLRCFVSL
RPKDWMQFLTLAEYWHNTNVNSSTGYTPFEAVYGCKPPKLVSYIDQSSSLPQLDELLRTRSSILQLLRQNLSEAQNRMKT
FADRKRTEREFEVGDYVYLRLQPYRQCSVATxKSLKLSPxYYGPFQIKEKIGAVAYKLNLPSSAKIHNVFHVSQLKRKLG
TADVSQIFLPDISDEGILKPKPAHVLDGRIVRRGRRNVTEILVQWEGTSRASATWERLFDMKRRFPELNLGDKVSLEGEA
>Gypsy-38_STu_gag#LTR/Gypsy 135-1484 Seems to be al there is in 6520 bp internal. Gypsy-42_STu_gag is very similar. [Solanum tuberosum]
MSVNGSNGSQLGHQDDIGNLNDVNDPIQLGGVGAIRLPPVEGNVVFHVTSTMLQLLQMKGLYGGLAHEDPHXHIRNFVDV
CGPFSFKNISQESVCLRLFPFSLMGEATKWLADLPRNSITTWDELTEAFFVRFFPPSRMMALRDNIQGFKRLEGEPIHET
WLRFQKLLLQCPTHGLPNNVLLQHFYRSLDSVNKGVADQLVPGGIMQQPFEIASNLLDGMTKINRAWYTREDQVSPLTFR
MTKEQIEKDQERDQNMAKMMTQLDILSKNVMGSGSRGVNVVGVSGANPEXAHFEALYNEEVSFLANQGGGFRPSYPRPGG
NQGWNRERDDGWRDRDREWRDRGANWKERDGDKERYVPPHERQKPKEQRADPENFRTEDMLARILNKVEGSDKVLKEMKE
DVSTLNQTVTSHSVSIKQLETQMGQISSHLNPRPKGGLPSDTLANPKNEP
>Gypsy-39_PT#LTR/Gypsy 667-6138 [Populus trichocarpa]
MANVEDVEGEGSVQGNGPPQFNDQPNFRTLREYLHPARQSTPSCIILPLNQQAFNLKPGMIQLLPTFHGMDSENPYIHIK
DFEEVCNTFIDRTCTEETIRLKLFPFSLKDKAKLWLNSLRPRSIGTWREMQAEFLKKYFPTHRTAALQRQMMNFSCSPNE
SFHQAWERFKDLLNACPHHGFEMWRLVSFFYDSLTADFKKLVSTMCNGEFYDKEPSEAFDFFDQLAENTKQWETSLPLHV
ESRNTISHSSGKFQLKETDDLNARLASLARKVESLEIKKVHVMSEQQEESCVVCESKGHRTTECPTIPAFKEVLYGQTSD
SSNVRKPFSNQVGNPYSETYNPGWRNHPNFGWRNEGSSVPQTFQPPPQPFHAPTHNTYQPPHKRSLEDTLQQFMQTQGGI
NNQAYKFQDQTNRTLDDIRSQLTKLTQSLSIQEKGKIPAQPMPNPRGQVHMSESSSSEPSNHEQVQAITTLRSGKIVDKA
IGFGIPRGIVEEKSKESEEGIKTQVTNESLSDKEGEINEKEMSEKGDDSRKIGVKVSDLEFVPRAPFPQRLGKPKHDLMN
SEIYELFKQVKVNIPLLDAIKQVPSYAKFLKDLCTVKRRLNVKERAFLTEHASAIIQFKTPPKYKDPGCPTISCIIGSHK
IDQALLDLGASVNLIPYTVYEQLGLGEIKPTRITLQLADRSIKIPRGIVEDVLVQVDKFYFPVDFVVLDTAPIQGSNAPI
PVILGRPFLATSNALINCRNGVMKLSFGNMTVEMNIFNVSKQIGEHEDIREVDLIQTVCQEHFEREWIKDPLERTLIHDE
RFCSLECVDEEVRELETYLDPMPIMSIGQWTPSFEPLISPQVKVEASLVQPYKPERKPLPSDLKYAFLGEDESYPIVISS
KLSIEQEQELLRVVRKHKKAIGWTITDLKGISPLLCTHRIYLEEEAKSVRQMQRRLNPNMKEVVRGEVLKLLDAGIIYPI
ANSKWVSPTQVVPKKSGVTVVKNENNELVPTRIQTGWRMCIDYRKLNMVTRKDHFPLPFLDQVLERVAGRAFYCFLDGYS
GYNQIEISLEDQEKTTFTCPFGTYAYRRMPFGLCNAPATFQRCMMSIFSDMVEXFLEVFMDDFSVYGDSYELCLMHLEKV
LERCEESNLVLNWEKCHFMVTHGIVLGHIVSSKGIEVDKSKVEVIQKLPTPRTVKDVRSFLGHAGFYRRFIHSFSTIAKP
LCNLLSQDVQFDWTSKCQEAFEKLKGLLTTAPIMQAPDWSLPFELMCDASDFAVGAVLGQRKDKKPHVIYYASKTLNDAQ
LNYTTTEKELLAVVFALDKFRSYLVGSLVIVFTDHAALKYLLTKQDAKPRLIRWILLLQEFNLEIRDKKGVENVVADHLS
RLSSYETIIDESPINEFFADENLFCAGTVSYIGSPWYADIANYLATSQIPSHWSKLDKQKFLRNVRTFFWDDPYLFKYCP
DQIVRRCIPDHEIPSVINFCHALACGGHFSSKKTTAKILQCGFYWPTMFKDVHAFCVACDRCQRLGNLTRRNMMPLNPIL
VLEIFDCWGIDFMGPFPSSFGYQFILVAVDYVSKWVEAIASRTNDHRVVVKFLKENIFSRFGMPRAMISDGGKHFCNKPV
GILMRKYGVIHKVSTPYHPQTSGQAELANREIKNILEKTVNPNRKDWSLRLVDALWAYRTAYKTSLGMSPYRLVYGKPCH
LPVEIEHRAYWAIRQFNDNENEVGKNRKLQLDELEELRNDAFENAKISKHKMKALHDKHIFRKSFHVGQKVLLYNSRLHL
FPGKLRTKWIGPFVIKSISEHGAFEVENPKNGNVFKVNGHRLKPYLENVVAEVETLDLEDPIPL
>Gypsy-39_BG_pol#LTR/Gypsy 1786-5844 [Blumeria graminis]
VKRQTPALSRRQGSKSYEDENEFIRSVLLDSSPLEMCSTSSSNSMLLRSHLSNPRINDSVKISTTSLIDSGCTAIAFADE
ESIVKRFGIETKPLVAPRSVRLADGSSQAAITHYVVFRLHLGQHSENLIFYITKLSKSNPVILGIPWLKLHNPVCDWRSM
TLSFRSEYCKRNCIHGRYWETMCLPSKRDSLSCNPRCKNELAPSCRSYNTTVEDCEDEGEHLITKMKENNCLSSQDISVK
EEIVVEETTPIWESPEDSDSLDLIRRKVDQADVEKFLENKPDLTIDMIKQKLPDELNHHAEHFLPKNAGILPPHRQWDHK
IEIMPGKEVPSCRNRPFSPSELQCIKKWIDDMLDKGFIRQSSSPAAAPLLLVPKQNGGVRICQDYRGLNDVTIKNRYPLP
LIRETLDSISGANFYTKLDVISAFNRIRIAEGHEWMTAFTTRFGLYEMLVTPFGLCNAPATFQNYINHTLHDALDKYCTA
YLDDVLIYSKTREEHTKNVDEVIRRLGNAGLQLDIAKSEFYTKKTKYLGLIISTDGLSMDPEKVKSIESWKEPSNLKELQ
QFLGFSNYYRRFIKGYSGLMQPLTRLLQKGVKWNWSDDQDEAFRYLKDSFTKAPVLRYFDYHRHTVVETDASNWASGGAL
LQTGDDNILHPVAFFSSKHSPAESNYDIYDKELLAIVKSLEEWRPELAGVQSTFEIITDHKNLKTFLTAKQLNQRQVRWS
EFLSQFNFVISYRPGSKALIPDTLSRLPGLKPKDASDERLQQRFRAMIPEDKVHPDLKLDCLNDEKFPEYKHSEILAPLS
NEVALIDLIYQAYKENPTAREMVEHLKDQSRRKWPRNLKKLLMKDMAEFKINNGLIYFRNRLFAPDYKELRLLIVHGTHS
SGPAGHPGRVKTLDLLQRSYWWPKMSKFVANFVKGCELCVRTKTPRTSPPGFLKPLNIPVRAWVDISIDHVVDLPPCKRS
GKVFNHILVVVDRLTKMRHFIPTSSLDSAELVSCFIKEVYKLHGAPESIISDRGSAFVSDFWHRLNTRLSVNLKHSSAFH
PQTDGQTEIINSALNQYLRAFVNFTQDDWVDWLPFAEFSGNNSVSETTGVSPFFANYGYNPRLGIEPPAPKTCDLNGSMK
KEYLRADAIADRFNRILEKLKALSRQSQERYENNANARRSEAPVYHPGDKVMISLKNIKTNRPKNKWDDKWDGPFKVVKV
YDGAVIVELPKHIGVNNSFHTSMVRPWPDSIIPGQSSINVNERRNTVGRVVERENDGKIVDKWKFDKILDVHDENIDKTG
LTYLVKWKYDQNPTWQPESDLKGCHKAIIDFHTKNPGKPGPPEWVKMPSTNQSIPEQQPRRSSRRLKQIKKLK
>Gypsy-123_GM#LTR/Gypsy 26-4495  [Glycine max]
MVTTKELETRMDSYEKIVSDLQESMQNSFEMMQKSIEGLMVSIATQHKGPKITTEDENHSGTHEPIVSVVDRAQIPFPSF
DGSNYREWKAKSEQFFELEGTPEEQRSRLLLLSMDGKAFAWQRHYMQNVNNKHKTWQQILQDAGSRFDTGAFDDPVAELA
RLKQEDSLIEYLERFDTLLARIAIPEELALSFFLSGLTVELEKSVRVHRPSSIQEAVRIARLQDEVLHEMTKKFSPTKLI
QADSQAKYSRNWSVTSQHHRTIPITTLHQQQTQNPTQPTHPTDSKVSTANNNSRKQVSDRIARGLCRFCGDKWDRDHKQK
CKVWGKLNAIFSSQDQETVDIQSESDEDHDNDLIKRSLDIVKDADVCISLNALQGVAGGSTLQMQGMIKKQVVPFLMDTG
STHNFISANWVKTLGLKSQNIQGFPVTVASDKQLVITKKCSQVQWKFHDLVFVADFLVLPSSTFGVILGMQWFRTLGEIS
WNCAQLTMKFEHQGKMVCLQGEQASTDMSELTGKLKTAQCQAMLLAIRGPYCYSDSSAADFQRLTQSQQSELDALLATYQ
QLFKEPTTLPPKRRYDHKISLLNDKPFCLKPYRYPHAQKEEIERQVKSLLSTGFIRESASCYASPLVLVKKKDGSWRCCT
DFRKLNALTVKNKFPMPLIEDLLDELHDACYFSKLDLRSGYNQVRMVEEDIHKTAFRTHSGHYEWVVLPFGLTNAPATFQ
NLMNDIFKEYLRKFILVFFYDILVYTKTWSEHIQCLSTTLQLLQDNSLVLNHKKCSFGKTKIDYLGHLISVNGVQPDEDK
IVAIKRWPRPTTVKELRGFLGLSGYYRRFIRNYGKIAQPLTQLLQKDTDFKWNGDTEKAFSTLKEALISAPVLALPDFGQ
PFTVETDASGIGIGAVLIQRGHPIAYISKAMGPKYQLLSAYEKEFYAILFAVKKWQHYFLGQHFIIKTDQKALKHLLEKP
PTTLMQNWGLEKLMGLDFSIEYKQGKENVVADTLSRQQPVGSLAAIFQVTSQLMMEAKDSWKQDHMLQKIVDKIRLCQQP
YKQYTFDGQFLRRKGKVVIGANSAIRTKILHHFHNSVIGGHSGDDLTYRRIKDQFYWKGLQKAVKKWVQECITCQQNKPL
LRMPAGLLQPLSIPDRAWKSISMDFIVGLPKSNGMTVIFVVCDRLTKYAHFLPLAHPFGAAKVAQLFMDNIVRLHGWPSE
IISDRDSIFMSAFWTELMKKHAVKLLRSTAFHPQTDGQTEALNKALEVYLRCVTGDLPKKWSEYISSAELWYNTKFHSAT
QLTPFEALYGYPPPMPNSTLTGDSLVEAVDYTIKTREQITKLLHHNLLRAQERMKHYADLKRVDKEFKCGDLVYLKIQPY
KQLTLANHAFHKLAARYYGPFKVLERIGKVAYKLELPTGTKIHDVFHVSLLKKHHGAHTVSTDFPVYNEEGEVQLQPLAV
LDRRMKKKGNRAITEVLIQWRHTNPEDAVWKELYAVQQQFPNFDWNSNRP
>Invader1_AG#LTR/Gypsy 488-4579 [Anopheles genus]
MATVKQLCEDFTKIGLVRECERLGLETTGGKVEIANRIVKYRATVASGDNAGPSGSGHRAEPANATDDVENYAGNQPYES
CDDDSEEKADLDLPEEEHGDSFVAEDDDETEEDPFQTAVRISTPKRPQRVYAFRDVEDSIETFGAEDGHDVRIWLAHLDS
VSKSAGWNDEQKLIMLRKKMTGIARKFVSSLRNVQTYAILKKELIAEFAPFVRSSDVHRILANRKKETAETMREYVYEMQ
RIAAQIDLDEPSLCEYIVNGVTDDDFFKSLLYEAQTIRVLKEKLLNFEKVRMARKKKTTDKEENKRVLSSSSRVDKRAEQ
RCYNCGNKGHQARACAQTQGGPKCFSCREYGHKASECARNKSVVPAKINVTEESVGMVDVVLNKTSVKALFDSGSNQNLV
TIGCYKRIEGSPLIDTSMWFQGFGGMRTKAIGMFTVDVTVDDNVFSGVRFFVVPNESMSYDAVLGRDSLNYFEVTMTTAG
VKVRPYGSTDEMFSIVCDNEDNLDVSPRFSERVKAVISGYKPAGNVNSRVETKIILHDETPVRSSPRRFAPGEKAVLEKT
IDEWLAAGIIRESESDFASPVTLARKKDGSLRVCVDYRELNRKMVKDCFPMRNIEDQIDRLKSARVFTTLDLKNSFFHVP
VEKSSQRYTGFVTHTGQYEFLRTPFGLVNSPASFSRFVADVFREFIKSERVLVYVDDLIIPSLDEESNFQTLKELLNVAS
ENGVQFNWKKSQFLKDEVEYLGYVIRGGCYRIAPSKLRSVQLFPEPKNVKQLQRFLGLTSYFRKFIAGYATISKPLTSLL
QKGVEFVFGEEERSSFDELKRCLVTDPVLKIYDESAETELHTDASKYGYGAALMQKSDDDKFHPVAFMSQQTSNAEKNYS
AYHLEVLAVVRAVEKFRVYLLGIKFKIVTDCAAFGHTLKSKELSARIARWALMLEEYEYEVVHRPGSSMKHVDALSRAPV
MIVKSDPMIEAIRKMQQSDERAKAIIELLKTQSFEDFVMCDGLLMKVVKGREVIVVPSGMQSDLIRRIHEKGHLGARKIE
GIIEQEFYIPNASEKIKQTIECCVKCILAERKRGKVDGLLYPIAKGDVPLDTYHVDHLGPMDITEKRYKYLFVVVDAFSK
FTWIYPTKTTNSFEVIQRLTTQSEVFGNPRRIISDKGAAFTSNDFKRYCEDQDIERVEVTTGVPRGNGQVERVNQVIIAM
LRKMSVNDPAKWYKHVANIQRWINSSPHQSIGVTPFEAMFGVPMRHEGDLRLGELMEEIRVAQHHDQREQTRAGARVSIE
KAQEEQRRSYDLRARSATTYREGDLVVIKRTQFGPGRKYAAEYLGPYKVTSVRPHDRYDVEKINGEGPKVTSTASSHMKP
YRF
>Huck1_ZM_p2#LTR/Gypsy 7530-6797 via tfasty with RIRE2, 4 frameshifts. [Zea mays]
WPFSTVTASDLEELVGEGLLRPLTDEQRPEWIPPVGGAAPSPPPGYVVSFVSFTSGGFGVPAGRFMRAILYHYGVELHNL
PQSPSRRPLFVAVCEGYLGIAPHWDLWTHLFFAELFASPTGERKVRAAVRAGGCTLLLRQSRASQYIPAFLASSNKGWQR
RWFYLRNDGELLPPFSQRVVTAATDAWRHGTPHERQKNLEPLLQALEALREGGLTAAGVIRRIHRRRVLPVAERRLSLWE
MTPKAD
>Invader6_gagpol#LTR/Gypsy 64-3168 via tfasty with BLASTOPIA_gagpol, 2 frameshifts and 3 stopcodons.  [Drosophila fruit fly genus]
MQHRNLLEIVNAVRGSQTTQVVVLPKFNPESAGSSAATWCSTVDLIVGENPLDGSALLMALTKSLEGSASNWLSQICFAG
MTWSQFQEMFLQQYEGNETPAATVFNVLNGRPNDGECLALYGSxLITTLMAKWKSMTAEEIAVSVALAHAANIDGRLQRT
VFTTTVKTRNELQNELRAFSYGKRKDHPVPENSTSKRARLHPNVKCHFCGKIGHKIADCRSMKNNLKNQQGSSSSIGRLS
DSKPGSITCYRCGNQGHIASACPARQSLSNQTKADEKRVNVCHVVEPIGTLISSGESYPFYFDSGAECSLVRESVSTQLS
GTRINNNVVLKGIGNNTVTSTLQILSNVTISGYCLEVLFHVILNDCINYNIIIGREILSQGFSATITIDKIELCKTRSVQ
TLSAxSSSFSLENVNTELCGEDRKILVNLLNKFCDSFIDGFPKNRVTTGELEVRLIDPIKTVHRRPYRLSIEEKQIVRNK
VNELLLDNIIRPSSSPFASPVLLVKKKNGSDRLCVDYRELNTNTVAEKYPLPLISDQISRLRGASFFSCLDMASGFHQIP
IHANSIERTAFVTPDGQFEFLTMPFGLKNAPSVFQRAVMKALGELAHSYVIVYMDDIMIIAETKEEAFVRLRTVLKILSQ
AGFSFNIGKCSFLKSCIEYLGFVVKEGEIRPNPSKIKALVALPPPQSVTQVRQIIGLASYFRQFVPKFSEIMKPLYRLTC
KNKIFEWKLEHEQIRQKVTKLLTDEPVLVIFDPRHPIELHTDASMDGYGAILLHKIDNKRRVVEYYSKQTSLTESRYHSY
ELETLAVYNSMRHFRHYLLGEFVVFTDCNSLKATRNKTELTPRVHRWWAYMQSFDFDxNDLDLEYRPGAIMAHVDFLSRN
PLPSARVITGEEEKHVLLAKITDNWLLAEQQKDSEISTIVVKIQNNELGESSAKSYELRSKMLFRKIQRNGKTRCLPVAP
RSFRWSVVNQVHEAVVHLGVEKTLDKMYEFYWFENMAKYVRKFVDNCITCKLTKPPSGKLPIELHPIPKVEIPWL
>MAG#LTR/Gypsy 341-1057 [Bombyx mori]
MLAAHLQPKPSILAERYKFRQRRQLNESIADYLTELKKLSKNCEFGSSLDENLRDQMVCGLKSEIIRQRLFAEEKLEYKR
AVTLALSLEAAERDAIAVERTPIEEVNKINFNECSRCGDRRHQAKDCIYKDYVCSSCHETGHLRRMCPKNGLKNQAEAAG
GSARTGRRGNRGAGGNRRSWRGQRVRDEEAESGLLCTYYTIKTTMTHTTTSIMNRTGVEKKMSLCTK
>Invader6_pol#LTR/Gypsy 3162-3800 a fragment separated by a deletion in the consensus [Drosophila fruit fly genus]
MAISCTTNRITKASPLELLIGKECRPFNMLPICEQVNKVDVNIIRNIARENIKKNALYEKTRFDKHKAKFDNFGVGDYVL
LKNEERHQTKLDQKYKGPFLVTEVLKGDRYILKSLTNKRTYKYPHEALRSMPTEEIPKELDLCDDQENVERDVRNPLVDS
NVDENVERDVRNPLVDSNGDENVERDVRNPLVDANVSEKLLSCLKTQVNERH
>GypsyDR2#LTR/Gypsy 41-4172 via tfasty with Gypsy5_DR, 2 frameshifts and 3 stopcodons. [Danio]
MCVCTPVHIVCLSEVVINKYCIMDPSVSVSLLQKTLPNMDPTAIQVLSHEITTQAQVLTTHQQQLTHLTQLTDELVKSLQ
NLHAAPTAQLTASYSPAQPSVTQTQVASGVRLALPDKFSGNPAKCKGFLLQCKLFIAQQPHLFKDENGKIAFVCSLLTGK
ALDWATAVWPDSTPIFPSFNDFLKRFCTVFDHPEGGRNAGEELLCLQQGDRPAAEFAVQSRTLAAQAGWADDPLTTRYRR
ALRPELQKEMACRDEGKTLDQLIELSIRLDTLLRTRNPLCSPVSCPVSPGPVTEPLQLGRTRLTPEERERRRRNHLCLYC
GNSGHTKILCPNKPPPKALPVSATTVFTTTNDIMSLPVCLKYGDAEISTAAMVDSGAAGNFIDYTFALTHSIPLTSCDSP
LAITAIDGRPLGEGHIKFxTQPITLQTGHVEKMSLLAINSPRHTIILGLPWLKLHDPQVSWKTGEITRWSNYCVTQCLHS
VSPVQINTITSIDDSEICQIPEAYHDLLEAFNKQKATKLPPHREYDCAIELLPGTTPPRGRIFPLSQPETEAMNTYISEV
LEKGFIRPSTSPASAGFFFIKKKDGSLRPCIDYRELNEITVKYRYPLPLVPAALEQLCSAQYFTKLDLRSAYNLIRIRQG
DEWKTGFSTINGHYKYRVMPFGLANSPSVFQAFINEIFRDMLNQWVIVYIDDILIYSNSLPEHIQHVRAVLKRLIQNQLY
AKISKCEFHQSCISFLGYIISPEGVAMDQKKVDSVTQWPQPETIRHLQRFLGFANFYRRFIRNLSTVAAPLTTMVKANNA
RLKWNSEAIQAFNQLKARFSSAPILSHPDPNQPFVVEIDASNSGIGAILSQRSLTTNKLHPCAFYSRKLNPAERNYDVGN
RKLLAMKAALEEWRHWLEGAKHPFTVITDHKNLEYIRSCKRLNPRQARWALFFTRFDFQVTYIPGSKNVKADALSRLSDE
ETLTEDGEPILKDPLIIAPIQWDIDPEIIQASEQHSTPQACPENKILVDSLLRDKLIGEVHTHPSSGHPGSTATVQLIQS
RYWWPSINKDVINFLNKCAPCQMAKHSRHRPAGLLQPLEIPRRPWSHIAIDFITDLPQSQGNTTILTVVDRFSKACRLIA
IPKLPTALETAELLCEYVFRYYGLPEDIVSDRGSQFTSRLWSAFFKNLQVNVSLTSGYHPQSNGQTERLNQEIGHFLRTY
CHANQTEWNKFLMWAEYAQNSLIKASTGLTPFQCVLGFQPPLFPWSGKTTELPAVDTxFKKCEEVWNAAHTHLAHAIRRV
KEQADRHRRPGPTYSPGQWVWLSAPMPxTPCKKLSPRYVGPFQIEKQITPVSFRLTLPNHYRICPTFHVSLLKPAVGPAE
ADREVAASEQGPPPLMID
>Gypsy-136_AA#LTR/Gypsy 3483-5939  [Aedes aegypti]
MDAELERYKRMDAIEECASEWASALVPVRKANGKLRVCLDSRRINALTKKDSYPMRNMGEIFHRLEKAKYYSVVDLKDAY
FQIPLKEECRDFTAFRTPKGLYRFKVCPFGLTNAPFTMCRLMDKVIGFDLEPYVFVYLDDIVIATKTFSEHVRLLRIVGE
RLAKANLTISLDKSRFCRKKVAYLGYLLTDKGVSIDNARISPILDYARPKNVKDVRRLLGLAGFYQRFISNYSRIVAPMS
DLLKKSKQKFVWTEAAEAAFGDLKAALIAAPILGNPDFSQPFCIESDASDLAVGAALTQQQDGQPRVIAYFSKKLSSTQR
KYSSVERECLGVLLAIQHFRHFVEGTRFRVVTDARSLLWLFTIGVESGNAKLLRWALKIQSYDIELEYRKGKNNVLPDCL
SRSVETVLTVNVDEGYQELASKIESCPTQYSNFRVVDGEILRYCKSEDGIEDGRFRWKRYPPKADRVEIIRRIHEEAHLG
SEKTLAAVRQRFWWPKMAVDVKRQCQACMKCQTSKASNQNTTPPMMGQKKVVEHPWQFLAMDYVGPLPSSGKGRSTCLLV
VTDLFSKFVMVQPFREATAETLAHFVENSIFLLFGVPEVVLTDNGTQFASKTFGELLEKYHVSHWRTPNYHPQVNDSERV
NRVITTAIRATIKNHHKEWANNLQRIANAIRNAVHSATKYSPYFLVFGRNQVSDGREYRQMRDTGSADQAGLVPEEKEKL
LEEVRENLKAAYQKHSSYYNLRSNANCPTYSVGEAVLKKNTILSDKGKGVSAKLAPKYVPAVVKRVVGSHCYDLEGVDGK
RLGIFHCKFLKKLAKPGSP
>Gypsy-131_GM#LTR/Gypsy 36-4546  [Glycine max]
MENRVGALEKAVDVHGEKLTEMKTDIDFIKDLLLQMNKKTPSVVGDHSVNKNEKPWEEEEESGETEEDKDVPLRSWVKKV
ELPTFEGHDPLGWLARAEKFFEVQQVKPSERLRLAFISMEGNAVHWFQYWRLKSKNPSWKEFADALIRRFGGNGRGTVYE
RLASLRQTGGVEEYVQEFELLVAQAKPSAEDQILGYFLAGLRQDIRSLVRPHDPRDLTRAMEVACDVEEAMKQMRSYGNT
QGRGASSGAGFRYQVGGGVIPRAGAFGGANSAQASNGGTRNSQGSMSSVAKPSFSRSRGTRTIPYAEYVKRRDEGRCYHC
GNAFGPGHRCPEKTMRVLILAEDERIDDNGEISRMEEENEHEEKREEAPDVECQWMDLSVCSAGGLTQPQTMKLKGELQG
QEVLILIDSGASHNFISSKLVQKLGLKLESTKPYYVRLGDGNRKSAQGCCENLKVQLGPYMMEGDFFLFNLGGVDLILGV
AWLATLGEIKANWQTLSMSFIHQGQNMIIQGDPRLSKAMISSKALKKLAKAEVDIMSMLWVVEKSNIEEEGLTADQTRQL
QGVLSEFATVFHEPKGLPPPRGIDHRIPIKAGTDPVNVRPYRYPHLQKNEIETQVAEMLASGIIRPSNSPYSSPVILVKK
KDGSWRFCVDYRALNKATIPDKFPIPVIEELLDELSGAVYFSKIDLRAGYHQIRMHEPDIPKTAFRTHQGHYESLVMPFG
LTNAPATFQCAMNATLKPFLRRYVLVFFDDILVYSKTWEDHLKHLRQVLARLSEHSFFVNQKKCTFGKTKIGYLGHIISK
DGVSMDPQKIEAVLRWPLPKTLKALRGVLGLTGYYRRFICNYGQIARPLTDLLKKENFKWTSKSTEAFTQLQQAVTTAPV
LSMPDFSKKFSIECDASGKGVGAVLTQEKRPIAYFSKALADSTLTKSIYEKELMALVLAIQHWRPYLLGQKFTVFTDQKS
LRYLLEQRITTQNQQNWLAKLLGYEFEIVYKVGASNRVADALSRRDEDKELQGISRPFWPDIAEIDEEVKKDLVLAKILE
DLKVDPDSHPQYTLEHDKLYYKGRLVLSPDSTWIPKLLQEFHTSPIGGHSGIYRTYRRMAQSLFWIGMKGTITNFVAACH
VCQRSKYQASSPAGLLQPLPIPKAIWEEISMDFIVGLPKSKGFDVVLVVVDRLSKYGHFILIKHPYTARSIAEIFVKEII
RLHGVPISIVSDRDPTFMSQFWQELFRLQGTTLNMSTAYHPESDGQTEVLNRTLETYLRCFCSEQPKSWAGFIPWAEYWY
NTSFQGAARCTPFEVVYGRPPPSLARFVPGETLVEAVAQDLMDRDEALKQLKFHLQKAQNQMAHYANVHRKISQIQPGDW
VYLRIRPHRQISMPTKIHPKLAAKYYGPYLVLKQMGAVAFKLQLPEQARIHPVFHVSQLKKAAGHHPVEPELPTELQGTT
EIYQPFQILGTRTVNLSGTEVPQVLVHWQGKLPEEATWEDTFSIRNQFPGFNLEDKVVYEEGRI
>Gypsy-136_AA#LTR/Gypsy 356-2674  [Aedes aegypti]
MAVRLPFADHLINDEVDYELTIRGKIEETKNDVEAKYRLLRYLFKEDEKEGRVYESPFTIDQEFDLICSRISELRSKLAN
GLDDRSFSRLKHYWGRVYRIMTKDGESERMRKELLKDIRTELSKFEGRKELAQRPDPFNFEGEDQSKKNGAKQKEQVDQN
GNREGAEDRASEREKALEAQVKELQRKLEILLNESKGAQGGDKNSDMENESLKGVNDGSRGYAGSASHTENQNEREKVDR
DSRASLSGQSSKHNELARNYAQGNETYDNYRQNQERGSYHRQESRNYRAVERNDTVRERFQGDDEWDSYDRRRDGLGFDR
FGNEHLERRNERFPLNRTSQMEREVVQRPYEVRGPWNEAVTRRAEVAQDRDAYRGQQASNAFRDEQIGHPFERRRSNGPW
RHQQDVRRSYDQRWSGENAERHWSRDRDEQFRRSVGREPGIQLEFSSDEFSEDERRFTRRQREPRGNFRRISEAEIRDAD
RRMEKWHLSFSGDARSRSLEDFLLKVRRLARMDRIADDVLMQRIHTILRGEAYDWYLCYADEFLDWEQFEERIRYMYGNP
NKDQGNRQKIYERKQNRNETFLSFKMEIERLNKLLSTPLDPQRIFEVIWDNMRPHYRSKLACRTVDSLRKLEYYAYRIDA
NDPIFRNSREGPSKTNAVHNIEVERKEDESYSSDSEAENVNVMGSRFERDKKHRDQRSAGTNGRSQGGTARDTPNTVQLP
LCWNCRKNGHLWRNCPEEKRLFCYLCGAQGKTATTCENHSGDARVRAMDNSGN
>Gypsy_MT_pol#LTR/Gypsy 5960-9469 [Medicago truncatula]
NHPIIICRLNHNKPVEHSNLTVPPSFDFPVYEAEDEEGDDIPYEITRLLEQEKKAIQSHQEEIELINIGTEENKREIKIG
ATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMT
VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSF
ITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCT
FGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDEC
QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAW
AAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIEFDF
PDEEIMYLKSKDCEEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQRHHIPFTARILFECTNNMAEYEACIFGIE
EAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWN
DVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLASRFRLDGDILYKRNY
DMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVMS
SPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNN
VVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEA
VLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVHPREFKVGELVLKRRISQQ
PDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA
>Gypsy-140_AA#LTR/Gypsy 3530-5734  [Aedes aegypti]
MRDLPMYRYSPKIWEKIEEELERWKSLNVIEECSSEFASPLVPVKKANGKIRVCLDSRRINSVTRKDAYPMRNMADIFHR
LQKAKYFSIVDLKDAYFQIPLKESSRNFTAFRTPKGLFRFKVVPFGLKNAPFTMNRLMNMAIGFDLEPFVFVYLDDIIIA
TETIEEHFRLLKEVALRLKKAGLTISVEKSRFCRKQVKYLGYXLTENGLSIDSAKLEPILNYPRPKXIRDVRRLMGLMGF
YQKFIPRYSHLTAPITDLLKKSKKFKWTDEAELALEELKSVLTSAPVLANPDYTKPFIIETDASQLAVGAALLQQFNDGK
RIIGYFSKKLSSTQRKYAATEKECLAVLLAIENFRHYIEGTTFTVVTDCKSITWLFSITAANANSRLLRWALKLQSYDFT
LQYRKGKDNVLADCLSRIDSIQVIDDEHQKLIDNIKKQPQDYKNFKVIDDKIYKLVDDSSKFSDKRFEWRYYPTLAEREP
LIESIHNIAHLGYEKTLNALKQKYFWPKMASDVKKYCKQCLACKTSKGINVNPTPPMGSQKKSCDYPWQFLTLDYVGPFP
PSGKGRSTCLLVVTDVFTKFIMVQPFKQATASSLVQFLEQAIFLLFGVPEIILTDNGSQFTSKEFATLLKRHGVKHWLTP
SYHPQVNNTERVNKVVTTAIRATLKGNHKQWTENLQEIACAIRNSVHDSTKFTPYFLTFGRNMISNGKEYENIRNGGASP
NTTLSEEERENCIKM
>Gypsy-19_NV#LTR/Gypsy 92-3934 [Nematostella vectensis]
MNLELGSISTFDCKGNPTSIGPRWKRWKAAFQYYLEAKDITKESQKKALLLHCAGIDVQEIFTTLTDPLEEAPTGDTCYK
QAIRMLDSYFSPQINVPYERHCFRQTKQEESETVDQFVTRLSQMAENCDFGDKKAEHIRDQLIDKCKSHNLRKKLLESGG
ALTLKRAQELARAMEAAESQAKFIENSFETAGKVNSLRGREEKEKGKGKHCYRCGMEGHFSKDPECKARGRMCNKCGKIG
HFAKVCKSKELKSKNFKQKKGTVHQLTEESDEYAFAVTEGQGCVTIDTELGGVELKGVLVDSGSTCNVIDRTTWEELKSK
KIKCKSWKSQKKLYAYGTEEPLNTAGEFEAKLTYNNKSCCARFVVIEEKARPILSRQTSEILGVLRIQVNTVQEDELFEE
YKECFTGVGKLKDFQAKIHVDETVRPVAQKARPIPFGLRGKVNQKLEELKNLDIIEEVSGPTPWVSPVVIVPKPSGEIRL
CVDMRMANEAVVRERHPIPTVDEILYNLNGSTTFSKLDLKWGFHQIELDEQSRVITTFVTHEGLFRYKRLMFGISSAPEL
YQHIVQQVLSSCEGAYNIHDDIIVHGRTVEEHDARLRKTLDLLKNKGLTLNKEKCVFRMSELTFMGYLLSSKGIGPTESR
VEAVLSAKEPQTAGEVRSFLGLVNFSARFIPDLATTAEPLRRLTRKGEEFVWGQEQQNAFDTLKRDLSKANTLAYFDKNA
ESTRLVTDASPVGLGAILTQVQNGCERVIAYASRSLTDVEKRYSQTEKEALGLVWGCERFHMYLYGVEFVLLTDHKPLEV
IYSTKSRTSARIERWVLRLQPYNFTVKHIPGKENIADSLSRLTGAKGVCINTDAEEYIRHVAEMAAPVAIPIEEIERESA
VDPEIKQLRDCILTENWDGAPTQYKAVRQELSTLGKLVLRGTRLLIPTKLRKQVLELGHEGHQGVVKTKQRLRTKVWWAG
IDRQVEQKCRACHGCQLVGASTPPEPLRHTQFPTQPWKDLAADLMGPLPSGEYLLVVVDYYSRYYEVDILRSVVSSKIIE
SLDKIFCTHGLPESLKTDNGPQFVSEEFETYLKANDIQHRTSTPLWPQANGEVERQNRSLLKALKIAQAEKKDIQQELRK
FLIAYRTTPQSTTGATPSKLLFNREVRCKIPEIREFRTEDSEVRDRDMELKQKRTDYADARRNAQENDLQPGDTVLLKQR
KENKLSTNFEDTPYEISSKHGNEVTVTSSEGVSYRRNVTDIKKYFGTGDEATPSVESSVDTRPTRERKLPSHLKDYEVYV
>Gypsy-19_DR_pol#LTR/Gypsy 1868-6544 [Danio rerio]
MGSTEFFKLRSVSVVGRTETGGNKQCPKKHSYKQNVNSTSKLPARLVGTRCTASIQIEGKVVSCLLDTGSQVTTIPMSYY
KKHLSRHPMKSVEHLLEVEGANGQSVPYLGYVELNLKFPKEFLGVEVEIPTLALIVPDLTTVPQILIGTNSLDVLYTNYT
EGETSACKSNFYGYQAVINVLERRNQQASIETVGSVRLKGKQEIIPAGCVVVLEGVMQLKNPLFKKVVSVESPMSSHLPG
GLLVANSLHTLPARQRVAQLSILVKNETQTDLIIPSRAIIAEAHAVERIVEREISKKSAENEKMELNEQKIPIDFGNSPL
SPEWKKRITSVLNSMPDVFALNDLDYGHTDKVKHRIKLNDETPFKHRARPIHPQDVDAVRKHLQELLEAGIIRESESPFS
SPIVIVRKKNNSVRLCIDFRKLNSQTIKDAYALPNLEEAFSVLTGSRWFSVLDLKSGYYQIEMEEADKQKTAFVCPLGFW
EFNRMPQGITNAPSTFQRLMERCMGDLNRKEVLVFIDDLIVFSETLEEHETRLMQVLKRLKEFGLKLSPEKCKFCQTSVK
YLGHIVSQHGVETDPSKVEALKTWPRPNNLKELRSFLGFSGYYRRFVQDYSKIVKPLNDLTAGYPPLQKHCNKKRDETKQ
YFNPKEQFEERWTLECQQAFDTVIEKLTSAPVLGFADPKLPYVLHTDASTTGLGAALYQEQDGQKRVIAFASRGLTKSEA
KYPAHKLEFLALKWAVTAKFNDYLYGADFTVVTDSNPLTYVLTSAKLDATSYRWLSSLSTFNFKIQYRAGNRNQDADGLS
RRPQEAMPDDLETTKERERIRQFAYHHLTDASSAVVSSEAIKAICERHEVCQSNSHTDSLYQPVTLVESLAVGEKVLPQS
FQQEETCRSGEIFLLSEQDLRERQRADPEIGIIIKHLEHEEKPCLKTIPSHLALWLREWNRLVMKNGVLFRKRNEQGSES
YQLALPVNLRDVVIKELHDEMGHLGIERTLDLVRSRFFWPKMSLTIEQKVKTCERCIRRKTPPEKAAPLVNIKTSRPLEL
VCMDFLSIEPDQSNIKDILVITDHFTKYAVAVPTRNQKAQTVAKTLWDNFLVHYGFPEKLHSDQGPDFESRTIKELCRVA
GISKTRTTPYHPRGNPVERFNRTLLQMLGTLNTKEKSNWKDFVKPLVHAYNCTRNDVTGFSPYELMFGRQPRLPIDLAFG
LPVSSQPESHSKYVQSLKNRLEESYMVATKNASKVAARNKTRYDQRVVSSTLDVGDRVLVRNVRLRGKHKLADKWESDVY
VVVKKAVELPVYTVKPEGKDGPLRTLHRDLLLPCGFLLMDKPKEPLDKEVPVKPRTRASSAKELEKCESQSEHSEDDDLS
ESYAPERTLEIETRIVSNTNPVACIRNRQTKNLPSVETAIEPSTECPIQHEPINDNLPEPVERNIPYLPEAEDQDLLCES
ERENVEELINHQSTENEINYISSQKDHTPCQSPLIDQDEMPQPEKTQRRSQRSHEPPKRLQYPQLGNPLSMVIQSLLSGL
STAFTNSLEENLEQFNSVPTIVTVQPQMQRDLHAFRRG
>Gypsy-19_SMo#LTR/Gypsy 1093-9978 [Selaginella moellendorffii]
MYPKPRRTSSKSEEDRQRLIRRLDRDLKNLETKRKKDQEKLNQVVRPSKRENYIRHELLPRANSDEPVSDIREEYDNYTT
PPDTPPAAPSTAPTEVPEPESTPSTAPTKVPEPDRTFEQSTQTTPEQQNIFQAAYNHFKGTFTNPIYSDDERPSFPPSFT
DFTRPAPFSPYRPIFTTPIYPTFASNIYRSPLSARPFEHAFDFNAPTRQQLDFTNYSRTPIYPVNSSKDEQPESSNSQAL
DVNNSHRTAEQLQSSNNNEIDEPIVDDNNLPQQPQSPHNYTFEELFDNLEEQPQPTQHNSDKYVDNKFEHHLPKINTGKQ
PDTDDDVDDTPENSPNTEEKTEKSPLNNNNNSPPSSYTDFAVDPDNPLLQITLGLHGDNLTKQPRQYRHYYQQQMAVTTA
VANIPVGRHVSYPLFHGLKSEDAEKHVEQFREAIRINGQTTELPYYFRCTLRKRANEWAQTLPQNTSFDDLTLKLVDRFK
SSLTQSQRLHKIQKLKQKSGQSIDDYTQTFTRHASKCGNSATETLLYQWYMQGLRRSLREAATHINVATYLELARALQDV
QARRMTAQVDDTDNSDSDSSSDDDSDDELGESTKSKLRKLRKTIDKLKGKAKADIKEFRSGIWCTKCKNEGHPASDCKLQ
ISKCQICTKEGHDAKTCRFRNSPEVRQVSNYPRQQFRQPYPNQYFDNYQPPPPTNWRPPRNNFQHQSRQWNDQPRYNNYN
NYNNDYNNNYNDRQHPPNRNYPANRDNYNQGYQQYPRYQNRRYQGQGYQDQAYQGNYNNRPWQPRLQNQGGPPRLGPPPP
RQQDQNQQQPPTTRMVETDELPYADNDDSDPQVMAVQTRAQIRAEKQQQPDRDSGDSEEKGPESPTKLREWKKKQKLAAK
IQRQLALQPPELVILDSDNEAQPSPARQQCQDSIPENRQTNRPTSTPTPEHNSANFDKIQAVAETILNQNIQITIGQLLK
IAPYLTKQLTDLTSAPTNTLTDSPTLNSTRTAVDTFRTEIQPGDCDNDVPTIDLRLDKHLVRGAIIDGGSSVNIIEESLV
QQLNIGPVHPAPFNVRMADHRSVQPKGIIRKVNTTIQGVEIPVNYVVLKLPEQTDGYSILLGRPWLRTAQVYQDWPNDNL
ILRGPDGPTTVSTKATKSLSSHNRPIDLEEYNLEDGLDDYEEQQILKAYPDLEPLAEIDLFRIVADFQRERPPITSALKN
PVTRDTKLEAPPAFTVDNHNKVAYIPSIPADQKLEKVSLADDGNEHYIVLATDISASFRDKGINLLRKKKHLFAWSYRDL
KGVSPKLSLHTITLLPDSKPRRQAAYRMNPNLMEQVKKELDKLLQVEYIYPIQNPIWLSPLVVVPKKNGKLRICVNYKQL
NDATEKDVFPIPFTDEVLDAVAGHEMYSFLDGFSGYNQIHIAEEDQHKTAFISPWGAYAYRRMPFGLCNAPFTFQRLVTN
TFRDYLTDFMRVFMDDFSVFSSEDQHLECLEKCLNKCEENNIALNPDKCAFFVKSGVLLGHVVCKDGILIDKDKVDVISK
LEPPKNQKELRRFLGKVGYHRRFIHKYAHIAKPLTDGLKQDAQWTWTSEQQQAFDNLRLKLTTAPILAKPDWTQEFHIHV
DTSDVATGAILSQTQHDNRDQPIYYASRLLNPAERNYTTTEKEALGMIYSLQKFRHYILSTKVVIFVDHKALLYLINKPI
LSGRISRWFLLLQEYNFEIVHKPGKNHEQADYLSRITTGDKPERLTDDLPDSNLFRVSIPATWLDDVFSYLNSAKVPDQY
TTSDQKKTFVAKTRRYSVIGGTLYKLGIDNILRRCIKPPSTTQIIKEAHDGPSGGHFAADTTTRKILQAGLWWPTLWHDT
EEFCKRCDTCQRHRLPPKTQTQQLNPTFPMAPFQKWGLDFVGPQVSTRRRNQYIIVATDYTTKWAEAIPLRHATAKATAT
FIYENIITRFGTPLELVTDRGTHFINQTIEHLATEFKIRHKTSTPYYPQGNGQAEATNKTLKTILKKVINDSGKDWDDKL
LDVLWAYRTAYKVTTDMTPFKLAFGTEAITPIEFIVPSMRVTVKYNLDTRHAVRERLQQLEHLDELRLNALWTLHAIQKQ
RKARHDRQASRHNIPKYSVDDHVLWYRGPIGKLGRKLHTNWQGPFKIIELYPNGTAKVSTLAEDFTEIVNLNKLRPYHVD
IFSISTSANFRPKPTNTPKPTINTHPSRQTLTQISSTQLNSTQHELIHQLQQQTAAKISKSQATVGSTPPEQISTVELEL
TSSPISTIDLQSSQIKPHQFRQQISTVHHQQSSAARSANQQLRVSRTLTGRALRSQKMKRKMPAHPPRRLRYVIHHIPRL
PSNDTTTWLKDHGFELLHKAFSTHPDQKLARKLAASFNPKNSTITDGTNEITLSPARIASVFKISNKGLLKFSGEVPQQI
IKANREITGELTWEDIEEQHMDRLKALLLYYELRPTDRTIGKRTAEVYGALLDGKRVNVAHHLHELLLKLLDRAILATLN
KKTMRTVIFPLLIALHQALPNKQPWTTQTNSTEQSDSSEEHSESEGATPSKKPKPASQQSGSTHSNNTSSSNKHSNNSTP
LRRRLTRKTPANPAPKPLIREHLVISDKEDNSHHHPHSPQSPHPLESAPKPTTSHKHVNIAKGKRQLIAQNSISPPAENN
ILNAPTSSTRSTKENIDYLRQSLEEHATMPPPANTTTSIHKNSAPSTKFQAKNFPTDKLISAPHLGRSSTIKLKSSSPTT
SKNPARPRHPHPTKQIQPPATSTPGTKNTANPSEKHQDHGAGAGAAAMPQPQSQVRRDYDEIRKEYEDKLRDPSYCTRKL
FEALDQRMHREQANYFPTPADIAQHLLKQDSFIYTRGAIKKEFYEPLNHRLDTQIEEMKQIRTDLRDIRKIVSKQPSTPS
AAHEFTYKFKYEELNTRYRKLEDDHTALLAEVADLQEDGTDPPDSVPNHELTLPQQKRRLYRLEQQQQQAMETDYVRTED
GV
>Gypsy-21_DAn_gag#LTR/Gypsy 746-2164  [Drosophila ananassae]
MMGLDRSPNRRVGSASNSLCSICQVDISSANAYTTTCQHEFHRECIEAHWKNSEKCPVCESACRATASKTAEKVARETRS
RSKATQPVNNPLDEGPSTSIRSSSNNNTNSSIITANAVTLLAMERRMLATLSEKMSELIQNAFSESVNRVTLTPSPAQPQ
LQDQVPRVFDRVETPRSPASQRTVASELLTRPDKVVHILNGWKIKFSGEGMSVDNFIYRVEALTRQMLDGNFTVLCRNCS
VLFEGKANEFYWRYHKAYGEISWEDFCAALRLQFRHSRDDNDIEELIRMTKQKPNESFDSFYDNISGLIDQLEQPWVSSK
LVRVLKSNLRPEIRHEILNLEIKTVSELREICRRREAFLADVKRCSGYTKVVPFRREVAEFGDEMVDLQESEPEGEAGVE
AFSLKCWNCQSEGHRYQDCLSERRVFCYGCGAANTYKPSCSKCSKNFKQGISKSQYKQKTSYASRNQSTMTDQ
>Gypsy-21_BG_gag#LTR/Gypsy 268-1935 via tfasty with Gypsy-52_BG_gag, 1 stopcodon. [Blumeria graminis]
MTTTNTEFSQRMSESFTSCFPNLSGVLTKHDFTHTLANRPFSPSKLAEILNVLPNPNLDDNAKAIFAMLLAFEHGFEKLS
LKASENEVAYNEERSRNVRARNARVTAENEKDVLRAQLETERATLSSTRAELSDSLGKKLAAETQLQLALLQNAQSRAIG
EGIAAQAPTARRTQKDPNKFTASSNEKNTVQRQEKYETFKTQVQGIISIDFACFLTEASKILYICGLMDDHAWDAVCDGH
KSITANLNDPSQWQWQNENALWTDLDSxYILFNSATLARNTLDNYSQDSPRNGTIPYGEWKAEFIRLSNRAKLGPREKVE
KWRRFIGINIKKILRSQVDNPGDDDFVGWVSRCDNIARNQLQEAHYDSINQSSGKSRNEKSNEPAQYPPDVRNAACRSHP
HDDPMDVSRLQISDSERQRRRIQGLCLACGQSGHIARDHHRKFDPIPMPKRANITSAYNKQNCQDIENRSNSRPQNINSR
SHFVNPQYFTQPPQFPMSYYPPMYQQITPQQTAHSRLRAVGENSGYVSDASSDHVSPDQGRNTSENLNQLKGKPLI
>Gypsy-18_NVi_gag#LTR/Gypsy 3621-5174 [Nasonia vitripennis]
MTDETGNRTGENTGADLATTMANSFMLMSCVSGIPSFDGKHTKLRDYIQDLKNANELVTEAIRPQFMRNVLQRITGAAKK
SLNNKTITTVEDLIKHLKQRFGPGRDFSYYNTRIQTVKMRQGDTVGDFYDELNVLLSSARNALKEEKGSDNLDAMMEPLE
MLAVDIYIRGLPANLSERVDLFKPKNLREAYEEAVRLETRMEARIIPDSRPRVNRSYYNTERRDSYNNGYRNEGGGYNNR
GGYNNEEYRNQDRYDNRNRRHDDFIGYMPEEEECAGYVEEEEDYARYDNEDEDYVGYVNEPEQRQREFQDNHRRNNYNRN
NYNQNGYQGYQRGNGSGNNYNRGGYQRGYNNSNRPGGSNWPSWNRNYGQRSQRQIFNHENGRRENYQPSGPDRRENYNNY
PNNWRNGNARNYQQNENERENLNSQRARHGERMTSQEQNQQPIQKPQQNVDYQKYQQQTQGYNQGRQNPNQSSQNNQVQQ
KAPVMAIMTREQELPIYGQPTARDLKSLIGKMMNQQQ
>Gypsy-14_HM#LTR/Gypsy 112-4119   [Hydra magnipapillata]
MASHFGNLSEFNSNEDWDNYVERLDFFFIANDIVNEEQQRAILLSSCGHATYKLFKSLVAPGKTSDRSYTELCRLMSTHK
SPTPNPIAERFKFNSRNRDTSESVATFIADLRALTTHCAYENTLDEMMRDRIVCGINDSRIQRRLLSEGSNLSLQKTLDI
VLTMEAAANQAAIIQSHQNVTSPAAINKVEIKSERHYERECFRCGGKHNPETCFFKDQECFFCHNKGHTTKKCRKKKKVL
KNTRTQHKIEEVNGNQNEEELYRIQSKSNKRKPIMIKVEIEGISTKMELDTGASVSVMSLETFTSLKKKGLTRKEIIPTK
SFLRTFTGEVVLPVGEVXLSVRINGQTNLLALIITPGKGPSLIGRNWLRKLKINWEKIFHASSGIPKSPNASMINTLVKK
HSAVFQNVLGLFKDTVVHIPLLPNVKPKFCRARPIPYALLEKVNAELDRLISSGIYRPVSHSRWAAPIVPVLKKDGTIRL
CGDYKQTVNQAAXCDSYPLPRTEDLFATLAGGQKFTKLDLAFAYQQLLLDKSSCELLTVNTHRGLFEPTRLQFGVHSASG
IFQREIEKLIGNLPFTKVRVDDILVSGRSDEEHLKNVETVLHILEKAGLKLKENKCVFMSPEVEYLGFKLTKDGVVPLED
KLNAIRNAPEPKDTTQVKSFLGMINYYHRHLPNLATIVEPLHRLLRKGIXWLWGMKEQTAFDRAKAELCSPKLLMHYDPK
KELILSCDASPYGIGAVLAHVTSEGSERPITYISRTLSAAERNYSQIEKEALSIVFAVKKLHQYLYGRYFTLVTDHKPLL
GLLAEGKPIPAMTAARIQRWALTLSAYNYCLKYRSGATHGNADCMSRLPIKNTESSVAENVILMMELSSTPVSAKDVKIQ
SARDPIISRVLDGVLSGLQFPNETGFKPFIARKYELGVEGGILMWGNRVVIPASLQEMILKELHSAHPGVVRMKALARSY
VWWPNMDKSIEETVRRCRLCELHQRSPESAPIHHWEYPSKPWSRIHLDYAGPFLGHMFLIVCDAYSKWIEAIVMKNVKSE
NLIEQLRSVFAIHGIPEVIVSDNGTSFSSAAFAEFVKRNSIRHIFTAPYHPSSNGQAERMVQTFKEAMKKLTAQQGNSIE
TTVNRFLFSYRITPHSTTGISPAELLMKRKLRSAFQGLKPDLNNSVKEKQERAERLSNRKAHLRKFDCGDQVMAKNFGSG
PKWIPGRIIKQKGPVNFEILTDDVVIHRHIDQIRLRFSDLPEYDSNPVITFPEPTNPQPPVENLSLNPFSLQPNTSIAKE
LPSTEESTASNAVQSSTEKDGASKLPSXMESSXAPVETRKSGRLRQRPIRFXDBE
>Gypsy-13_DAn_gag#LTR/Gypsy 898-2256  [Drosophila ananassae]
MSNPFRRYRSVRQFSSDSESESERPARSSTPKNARALRHAKMAFSMEQMTATIQAAVQHAVQEANIESQRRENELRLAIQ
RLTEQVNAVQVTPAQAEAPVIKVYEPIQIRDNVKCDEPLDAVKCLPEFTGTQETYVSWRQAAVAAYYIFRNYVNSSRHYQ
AVIIIRSKIRGPADAVLSSFGTVLNFDAIINRLDFTYSDKRQIHVIEQEMGTLRQGNMTLLQYYDVEKKLTLLTNEATMS
YEAPAAKVLCDKFRDDALRVFISGLKRSLTDVLFSAKPKDMPSALALAQEIEANHERYSFAASFARSQEDKDKKHYPKTQ
DHRQAPPPANAQTNTGKNPYYKKEQHKAQVHSAPHSGSTPEPMDIDPSLSRMLKPSLAPAYQNRKPVESDRSGPHKRQRV
NHVAQATSESEGKYSATASDATQEIDDDAIREYDSDVINFLGESPCYPSSDEE
>Gypsy-17_ADe_gag#LTR/Gypsy 103-1254  [Auricularia delicata]
MPSFGPGSEDFVDAATIDDPLAEIARLCSVLEEREAAFAKSQQDLAIQEAAARLMAQQLRSANLAAPPTPAPDRERSAVS
PPDSFDGNRANGRRFLRQCWLYIESRPRQFPDARARILFVLSYMKSGAAATWAGTVTQALMDNKSSYSAFADFLSDFALN
FVLSDEKGDAANRIDGMEQGSHSIEDFITDFDSYAALSGYSDYELQRKFKKGLNSRLLDRIYALDLAPSTMDALKKEALR
LEQQWRERQSFRKAPTAPGSRAGGPAAPSAPARTPSAPAAASRTAPNSGSREPDVKPMDVDWTRARNARPRTRACFDCGQ
EGHFRGDARCPHQARALAEAVRTVLVGLGVAPAGPSTSGAPPLAPQDNSSTPAKSSGVFDEAHD
>Gypsy-18_DR_pol#LTR/Gypsy 2021-6757 [Danio rerio]
MGPPELSQLAAFKLKSVSITGRTEARKEKCPKKKEHLLHQRTYKSPCYQLPTGLVGTRCTTKIQIEGREVNCLLDTGSQV
TTIPKSYYDQYLQQHPIKSLQHLLEVEGANGQAIPYLGYVELNLKFPQDFLGVEAEVPTLALIVPDLTTIPQILIGTNSL
DVLYTYCTQGNKRILKSHCHGYQSVINILEKRRQQASGAAVGPVKLKGNQQEVVPAGSTVVLEGLVQVKGPLFEKWVSVE
PATTPFLPGGILVASCLHSLPSRQRIVQLPVVLRNDSHTDIVIPPKAVIAEAHAVQRVEKEFSKVDADSEEADSILPKVP
VDFGDSPLPPEWKERITSMLNSMPDVFALHDLDYGHTDQVKHRIKLSDETPFKHRARPIHPQDVDAVRKHLQELLEAGVI
RESESPFSSPIVVVRKKNNSVRLCIDFRKLNSQTIKDAYALPNLEEAFSVLTGSKWFSVLDLKSGYYQIEMEESDKQKTA
FVCPLGFWEFNRMPQGITNAPSTFQRLMERCMGDLNRKEVLVFIDDLIVFSSTLEEHETRLKQVLKRLREFGLKLSPEKC
KFCQTSVKYLGHIVSQHGVETDPAKVEALKTWPTPKNLKELRSFLGFSGYYRRFVQDFSKIVKPLNDLTAGYPPLQKENR
KKMVESKKQYFNPREPFGGRWTQECQHAFNTVIAKLTSAPVLGFANPKLPYVLHTDASTTGLGAALYQDQDGQMRVIAFA
SRGLTRSESKYPAHKLEFLALKWAVTTKFNDYLYGAEFTVITDSNPLTYLLTSAKLDATSYRWLSSLSTFIFKIRYRAGS
RNQDADGLSRRPQTEIPDDLETQKERERIRQFTHQHLTNEQSMLVSEEEVRAICERHQIVQSGDDPDHLHPSVTLVESIT
VNVDALPQAFQQDDAYQITEIPQLSEENLRKRQREDPEIGIVVKQIKSKEKPCFKTILPELIPWFREWSRLELRNGVLFR
RKQEHGDSSYQLALPADLRDMVLTELHDKMGHMGVERTLDLVRSRFFWPKMSAAVEKKIKTCERCVRRKSLPEKAAPLVN
IRTNRPLELVCMDFLSLEPDQSNTKDILVMTDHFTKYAIAVPTRNQKAQTVAKCLWDNFLVHYGFPEKLHSDQGADFESR
TIKELCKVAGISKTRTTPYHPRGNPVERFNRTLLQMLGTLNNKEKSRWKDYVKPLVHAYNCTKSDVTGFTPYELMFGRQP
RLPIDLAFGLPVDGQTESHSKYVQDLKSRLEESYKVATENANKVAGRNKKRYDKHVVNSTIEVGDRVLVKNVRLKGKHKL
ADKWETEVYVVTKKAGDLPVYTVKPERKDGPLRTLHRDLLLPCGFLSASAPDTPVERKVMQKPRTRAQCAEESENLSEHS
ESEYDPVDYYDPERFTIDTRILPTSGLEPSSSSKHTVNLPVAKPGMKKGEERLVSITLVDEENLPDVETSRPAETDRHVL
ELPLESNLPDLSEIQVLDENIVDESEKEMAQIADQEKPDNCVGSSESSDRKDERGTNLTQREIGTSREFQETQREGTETE
SLRRSRRQGEPPHRLNYPQLGNPFCSVIQSLFSSLSTAITNSLEDSNPSRRYSPVENI
>Gypsy-17_DR_pol#LTR/Gypsy 1794-6530 [Danio rerio]
FKLTSVPFVGQRGTGESSQSPTDNLAVSVSDDSPTPKHKCCLKLPSGLIGTKCTARVLIADKEINCLLDTGSQVTTFPLS
FYQDVFANQPIQPLHHLLEIEGANGCQVPYLGYIETSITFPKEFVSSDIEVPTLALIVPDTRPNAQVLIGTNTLNSLYSE
YISSKPLKHHPVPQGYQAVMQVLEFVHRQGAEGNLGWVNLNCRVPESIPAGKTVVLEGSVRMSTPVTDRWVVVEAPRASS
LPGGIMVSSCLLSLTAGGKYLPIVLKNETEHDVVLPPKIRLAEVNSIQCVMPNGQNNVLTSSVNLTKNSEDSKIHFNFDN
SPLTSEWRERVTRKLNSMHEVFACHDLDFGHTTKTKHHIRLHDETPFKHKARPIHPKDIQAVRKHLQELLDAGIIRESES
PFSSPIVVVRKKNGEVRLCVDYRKLNLQTIKDAYALPNLEETFSALTGSRWFSVLDLKSGYYQIEVEEIDKPKTAFVCPL
GFWEFNRMPQGVTNAPSTFQRLMERCMGDINLKEVLVFIDDLIVFSATLEEHEERLLRVLHRLKDYGLKLSPEKCTFFQT
SVRYLGHIVSPSGVETDPDKIKALKTWPSPTNLKELRSFLGFAGYYRRFIKDFSKIVKPLNHLTSGYPPLHKSKKTQEIK
GHYLNPREPFKQRWTSNCQHAFEEIIDKLTSAPILGFANPKLPYILHTDASTTGLGAALYQEQEGKMRAIAFASRGLSFS
ESRYPAHKLEFLALKWAVTEKFHDYLYGSQFTVITDSNPLTYILTTAKLDAASYRWLSALSTYSFSLKYRAGKLNLDADG
LSRRPHEVAMDVVSRKEQERIDKFLTLHLENLGETSLTQDEVEAICDKHIISSMPEDVVESASDRTVLVHSLAMSSNAVP
NSYEEEELGVSLIPRLSVQDLIEKQGADSTISQIISHLNSGEKPSPTVRGELPELSLMMREWNRFVLLDGVLYRKRQNGE
VLTHQLVLPKEFRATVLRSLHDEMGHMGIDRTLDLARSRFYWPKMAQEVEQKIKTCPRCVLHKAPPEKAAPLVNIRTTRP
LELLCMDFLSLEPDRRNFKDILVITDHFTKYAVAVPTVNQKARTVAQALWDNFIVHYGFPERLHSDQGRDFESHTIKELC
SISGIKKGRTTPYHPRGNPVERFNRTLLNMLGSMNDEQKAHWRDFVKPLVHAYNCTKSEVTGFTPYELMFGRQPRLPIDL
AFGLPTTSKRLSHSQYVSKLKKHLEESYQIATRNALKNAERNKIRFDKHVVDSTLEVGDRVLVKQVRLRGKHKLADKWEP
SAYIVVRRVHDLPVYTVRPEGDEGPLRTLHRDLLLPCGFLTLPGEKVSNPPSSTSKPRTRQQVSGEDASENGVNDTAESM
EDEVPEYWIRIPVTNESHENALGTLTSTFDPPVGCDPQLPFVALGDESHVEMDSAGLEACLDDSHQEKQIKQITTLQGES
SEMSESGKSSEGELSEEMPQCPDDGIERSVEEELEEEIRKPLSNAPDNISSNIEQHETSQEPENPMRRSQRRKEKPDRLQ
YSELGNPLVIVAQALFHGLTTAFTNSLNGVDFVETSSPSTSDKAVTCQPVRVNATGRA
>Gypsy-21_DAn_pol#LTR/Gypsy 2071-5424 Poorer Gypsy12_pol very similar. [Drosophila ananassae]
MFKKLQARHIEVAIQTEDFICQSKSVHNDRPIEDTLQRVSLSSPDEQIVPDSSLLHSKISKLRDVAIHEVQKIANVAKRN
SRRLKAFWKNVKRCKDSLKHINSIPAGTRDPRPFLPVRLLDRVVYGLLDSGASISCIGGELAKEVIKNKEYRAIKGSAAT
ADGKSQNIVGVLNIDVEYGNDKKPLKLYVVPSLKQDLYLGIDFWKLYDLLPTHLKISEIESAKAVRPDEVDQHDLSEDEK
AKLANTINCFPSFTQEGLGRTNLITHTIDVGMAKPIKQRHFPVSPAVEKAMYTEIDRMLQLGVIEESESAWSSPIVMVTK
PGKVRICLDCRKVNSFTEKDAYPLPQINGILSRLPKAEFITSLDLKDAYWQVPLDVQSRDKTAFTVPGRPLYQFKVMPFG
LCNATSTMSRLMDKVVPAHMRNEVFIYLDDLLIVSASFEDHLEVLRELALHIRRAGLTINIGKSHFCMRRVRYLGHIIGD
GGIRTDPEKVSAITNFPLPKSLKNLRSFMGMCGWYRKFVPNFASLSAPLTDLMTTKRKFILTEEAIRAFERLKQCLSEAP
VLCSPDFAKPFAIHCDASKTGVGAVLVQVSDEGDERPIAFVSKKLNKAQKNYTVTEQECLAAIVALKNFRAYVEGLKFKI
ITDHASLKWLMSNHDLSSRLARWSLALQRYVFEIEHRKGSLNVVPDVLSRVNEEAVAAIDLTEGLIIDLNSESFKSEEYI
NLIKRVEENKLNFPDLKVEDGYLYRKAEHLTGEQVHDEYAWKLWLPKELVPKVLSLAHDSSLASHGGVHKTIERIRRYYF
WPGLVSDVRAYISACEVCKCTKAPNCVLRPPLGRAPETQRFFQRLFVDFLGPYPRSRSGNVGIFIVLDHFSKFVFLKPVR
KIDSSVIVKYLDSELFMTFGVPETIVSDNGSQFRSKAFRGLMQEYSINHTLPAVYSPQANASERVNRSVISAIRAYIRPD
QKDWDEVLNRISCALRSSLHSSLGTSPYYMAFGQHMVTSGSTYSLLRRLNLLNDRSLRFDRQDSFEIVRKQACEQMYRKH
EENKRRYDLPTRNVTYTEGQEVYRRNFKQSCFQAGYNAKFGPMFVKSRIRRKIGNLYYELEDLQGKVVGTYHAKDIRQ
>Gypsy-27_DR#LTR/Gypsy 71-4969 [Danio rerio]
MEAENFLINFPDAAEGSCEGPSHNSPVTPQIDRSLLDEDTGMEQPFIGAPILSSESRTDDLAVLVQAIDSLKSVFVDTVD
RQKKWLQDSTELCTHEVPKKTLTVVEKAHSEFLDVLSDRMKEFTKHTIEAIQWNSKQTHNEFKAMFDEANSSMFSSFKRA
LEESRVGEKTLQEEVCSLRKELLAMQTSLDSFMQQRISLDTKVDEKVLVSGSQVCSNTSSHVDSSESISQPALSNLTCGR
IPPIKMVFPTFGGVNDESDPVIYLERCNDFLALRPMSNSEILATMRSVLHASARDWWETVRFKINSWESFQKAFLAVFLP
EDYQDVLEEKVRNRLQGTNESVRDFAFSFQALFKRWKKEATDTEVLKALLKAMNPCYASQLRGRAQTVEELVRLGTQLER
DYDHQIKYNQLQLPKSSFLDQHLSKKSKGVEVKSNLPPEQSLTSLLCWRCHENHSPGSCSKFKAVLSGKQTGGQFQGTKE
FQPQNQQRGMLSAYDTQRFVKKDVSSGRKLDKRDGIKILRQLVIPMMVRNCSGKALVDTGATYTLLNVDLWNKIKEPNER
LDVWHEGPLYLANGDATVPLGQKVLDFYLQDLHFQVPTVVLPAQNLVYSMVLGLDFIALTGLQLNIKDQLYSFSDDPQGR
VFPFQPPITPGDSWKCCKPPGNYNPSASLYSAIPPVQFVCTANECVDKSDVGESGSVLMELLQSKIKESNLSERESHVLF
TLLYDHPEVCTPNLGRTHLVQHKIAVSTDVVVAQKPYRLPIHKKEIVKEQIDDMLNQDIIQPSHSPWASPIVLVPKKDGG
QRFCVDYRKLNAVSESDAFPLPTVNEILESLSGSGIFSTLDLNSGYWQVSMHPDSMAKTAFVSPFGLYEFKVLPFGLKNA
PATFQRLMNRVLADYLGQCCLVYLDDIVVYSANFHQHVLDLQKVLRCLQRAGLTLKLPKCHFCLTEIKFLGHIVTTDGVK
ADPAKTEAIQNFPVPTNLKELQRFLGMSGWYHRYVQNFSDIAEPLNALKKKGVRFQWTAECQVAFDCLKRHLSSPPVLGH
PNHAHTFVVYTDASSTGLGAVLAQRPSTFGASEEVLAYASRTLTSAEKNYSTTERECLAVVWAVERWRHYLEGKSFIVVT
DHASLLWVFNTTKTNSRLIRWALRLQEFEFILEYRKGKLNSAPDALSRIDVPDSCPMVASYVPKQSTESMVSLFPLCDED
IWIAQQQDVEIQRIYQSLAEGKQSDEGSGSEFVILEDKVYRKVSNPTKGTHFQIYVPQTLRKIFVEESEDEEFLGFE
>Gypsy-26_DWil#LTR/Gypsy 515-4531  [Drosophila willistoni]
MCLVAYSIECVTHKNKHIIFVYIFRYWNFLLKIMSEIKPFLCDTIDKSLLRHEWEKWLRSFTLYLDAEDITSIPKKKSKL
LHLGGPQLQEIIYNIPGALVDYDAQENNDVYKVLVGKLDEYFAPLRNSSFERHLFRNLSPLEGETFNRYVIRLRQQLAKC
SYGTTKAEIEDICLADKIIDSWASNDLKKRFLEKEQKLSDLIDACQVHEQVNKHSKTMLAEEVSDSVNKIFARKRFGRDP
PKACTRCGLEDHDANNGRCPARDKVCKRCNLLGHFARQCRTRNSKRSSDTGGYSNPKRRKVYANVQSVEDQVKSDDDEDK
ELECFRIDGSARNDDNIRCNIGGVSIGMIIDSGSPANLLCEKHWKMLCNSNAVMWNMRSQTTDRFKAYATEDPLRVLNVF
EAPISVKTNQEMIATFYVIEKGSQSLLGKKTAIQLKVLTLGLDVCRIETSLPFSKIKGRVIKLAIDSSVKPVHQPMRRVP
VAFEDKVADKIKDACDRDIIEPVRGPSAWISPVVIAFKESGKIRLCVDMRMANRAIQRENYPLPTFETFMTKARGAKWFS
RLDLKDAYHQLELHESSREITTFVTQQGLFRYKRLLFGVNSAPEIFQRVMAEILAPCKNAHNYLDDVIIFGRTEAEHDKA
LQEVLNLFEINCVLLNKDKCVYKAKELKFLGHILSSDGIAADPEKVKLILDFRPPETKEELRSFLGLVTYVGKFIADLSH
ITEPLRVLLKVNSKFVWSSEQEKAFVNLKNRLARIPELSYFDPNRRTQIIADASPVALGGVLLQFDERNESVIISFASKS
LSEVERRYSQTEKESLALVWAVEKFFYYVAGLEFELVTDHKPLEAIFKPTSKPPARIERWLLRLQAFKFKVTYRPGKENI
ADSISRLCKAQSCDSFDKGGDYNICQIVSCATPKAIAIPEIAKTSVVDREISAAVSHLKDDNWNEGLSSCYYPFRAELST
VGSILLRGTRIVIPEVLRQRVLELGHEGHPGESAMKRRMRAKVWWPRLDRDVEQHVKMCRSCLLVSQPTRPPPMKRHVFP
DGPWQCLATDLLGPLPNNDHVLVLIDYFSRYQEIKFIGSISSQTIITAFKEIFSRLGIPRSLRTDNGRQFVSAQFKDFCE
ASGITLITTPPYWPQANGEVENMNRSLGKRLKIASLNKGNFKEELQKFILTYNTTPHGTTGSTPSELMFNRTIRDKLPDI
RDIIEEVVDTSARDNDLINKQKGKLTGDKVRGAKESDIKVGDKVLLKNVIFPSKLTPNFETTEYKVVERNGNEVELFGNG
RKIRRNVSHCKKIPSNEGPPNNSKEDALTQTDSQRLIHSSSYSVIPDQPQVIPSDPSSE
>Gypsy-27_NV#LTR/Gypsy 79-4000 via tfasty with Gyps1, 4 frameshifts and 4 stopcodons. [Nematostella vectensis]
MATGFTLPPPAPLAIHDATIAEKWKRFKLAxDNYSLATGLHSKPEDVQVATFITIIGEEARDVFSTFSWQDGDKxKIQPV
IAKFAGYCEPRKNVPFECYRFNKRVQEAGETYDQYRTALRKLAEGCEFANITPDEILRDRRLFGVSDNEVRERLLRETNL
TLKKTDEICRASKSPTAQMKEVGQADTISAVVFNKKSQRHHNKSASRTACGNCGRTHESGDCPARGKMCNVCGKVNHFSA
VCRSKRxSARVNKPDVKFVEQESDEDASEPETYRDKQVSAVTLDDSQLVTLRLESGNSLRFQADTGVQCNVVPLSMYKKA
TNDIALRNVKPTKSTISAYGGSKLAVIGQVIIPVWRDTKKCKLDCKLVDKNDIRPILGRKASLGLNIIQYVDNNAINKPI
IGNSTVYAVHSSAIVTIDNIVQQFPKVFADEVGLPDGEYHIKLDGTVSPVQHAPRRVSVALRDQLKAELDKMVEQEIIAP
VTAPTPWVSSMVVVPKEHGKLRLCLDPKDLNKAIMREHYPVPTIEDVATRLHGAKVFTKLDVRSGFWHIKLDNSSSYLTT
FKTPFGRFRWRRMPFGIRSAPEVFQRKLHEIIGMPQVGVIADDFVVVGKGGTLEEANRDHDKNLIAFLHVCEEKGLKLNT
DKLKLRHTEVSFIGHVATGDGLKVDPAKVKAIQEMPAPTDKAGVQRLLGVAQYLSKFLPNLSDATRPLRELTQQEVAWSW
DEPQQKALDALKDAVTNTPILRYFNVKECVTLQCDASQFGLGAALLQNGQPVAYASRALTSAETLYAQIEKELLAIVFAW
LDGVMVESDHKPLEAIFVKLLHSAPQRLQRMLLRLQRYSLTIRYKKGKEMFLADTLSRAPLPEVNTCDFVHELEEINHQE
CLPVSGEQWQRIKHAAADDPVMCKLRDVIKLGFPETKFALPHCLIPYYDSRDELTLQEDLVFKGHQLVVPLCLRKEMMEA
IHASHVGIEGCIRRARESLYWPRMSTELKAYISSCDVCLSYRSTPGKELLVQHEMVARPWSKVSADLCELNGRILLVISD
YYSSFIEVSRLTTTTSRSVIKALKEVFARFGIPDVLVSDNGPQFVSSFRSFAREWSFDHKTSSPHYHQSNGKAENAVKAV
KRLFKKCKASGQSEFLALLDWRNTSTKGVGTSPAQRLMGRRCKTLLPMAGALLQPRHSIEQEARALTGTKQRQLFYYNKH
TKPLNPIVPGETVRMNYQDSxAERSYIVKVGNRSYRRNRRQFILGQEAPLPELPDSSEPESSPPSDGEASTDPLATEHTT
PETSTTASPRRSGRTHRAPAWHNDYQMQ
>Gypsy-32_ST#LTR/Gypsy 199-5552 via tfasty with Gypsy1-PTR, 1 frameshift and 1 stopcodon. Gypsy-14_ST product very similar. [Solanum tuberosum]
MNQGRQGELGLGLPGNIDDDNQDNVNNPENVNNQRNPNNQGVPPVVPARPVRDVAVPLTANLASSIRKPPPGGRFELKQS
MVQILHTNGQFTGLPHEDPQIHLRTFIDITDTYIPIGVSSDYVRLTLFPYSLLGAARRWLDSEPPNSITTWDDLAKKFLS
RFFPSKKTAKLRGEIINFVQKQGEDMYQAWARFKQMLNACPHHMQTNEVLAHTFFEGLDYNARALLNSAAGGQALSITSE
EFFALLDKLSEGNQGYEGEMSRTPTQKAAGILDVDQATAINAKLDAMQHNMTLCILQQMALNQAPVNVVQQAANWCEVCG
SGTHETEQCEANPDSVNYVGNAQRGGVQQNYGNTYNPSWKNHPNFSWGGNQNQNQAQGVNQYRSQGAGQQYxNPNQGSNP
SAPKGGMTNEELLQKLMTEIGTKLNARIDKQDENIRNIQMSQMSLEKQVAQVANSLNLRPQGGLPGDTEPNPKQLHAVST
RSGLQLEELAPKKRDTEVSNKEKKVEEVVKSSNVEVPVPQKKLPPPFPQRLKKQNEDECFGKFLSLLKQVHINLPLVDIL
QGIPKYAKYVKDIVASKRRLTEYETVALTEECSSRIQNRLPKKLKDPGSFTVQITIGQSVHARGLCDLGASINLMPLSLY
QKLGLGSPKRTTVILQLADRSIARPEGVVEDVLVQVGSLIFPVDFVVLDFEPDSEVPFILGRPFLATGRALIDVAAGQLT
MRAHDKVEVFDVYRALKLPSIYEELSAITVVDRIVESQVVVPEDPLERVLVGHEIEGDTEAQEIESCLNLALVDTRRNRV
ESLDRELGPPPKPSIEEAPKLELKTLPAHLRYAYLGTNETLPVILSAELSDLQVDAALRILKRRRKAIGWQMADIHGISP
ALCMHRIYMEEDHKPSAQHQRRLNPLMKEVVRKEVIKWLDAGIVYPISDSKWVSPVQCVPKKGGMTVVRNEKNELIPTRT
VTGWRICMDYRKLNDATRKDHYPVPFIDQMLDRLAGQEYYCFLDGYSGYNQILIAPEDQEKTTFTCPYGTYAFKRMPFGL
CNAPATFQRCMMAIFHDMVEDFVEVFMDDFSVFGKSFEVCLRNLDKVLARCEDTNLVLNWEKCHFLVREGIVLGHKVSKS
GLEVDKAKVEVIEKLPPPISVKGVRSFLGHAGFYRRFIKDFSKIARPMCSLLEKEVKFDFDEMCLKAFEMLKRNLIEAPI
LIAPDWGLPFELMCDASDVAVGAVLGQRKNKVFHSIYYASKTLDSTQANYTVTEKEMLALVFAFDKFRSYLVGTKVIVFT
DHAAIRYLFNKKDAKPRLIRWILLLQEFDLEIKDRKGTENQIADHLSRLEDFSHVNEGEQIREEFPDEQLMALDISQVPW
YADIVNLIVSGDYPPGATTQQKKKLNHDAKFYIWDEPFLFKQGVDRVVRRCIPESEVHKVLESCHASPYGGHHGGERTAH
KVLQSGFFWPSLFKDSIAFVKGCDKCQRLGTISRRHEMPLSNILEVEIFDVWGIDFMGPFPPSSGNQYILVAVDYVSKWV
EAVALPSNDSRVVIKFIKKHIFTRFGTPRAIISDGGKHFINHLVKNLLAKYGIRHKVATAYHPQTSGQVEVSNREVKQIL
QKTVNAQRKDWSEKLDDALWAYRTAYKTPIGTSPYHIVFGKACHLPAELEHQAYWAIKRLNLDPELAGKKRVNQLHELEE
FRLHAYENAKLYKEKTKRWHDKHIVARTFNPGDKVLLFNSRLRLFPGKLRSKWSGPFEVVRMTQHGAVELKGKTGLTFLV
NGQRVKHYFGEDSDRDREALELNDE
>Gypsy-31_DYa_gag#LTR/Gypsy 1042-2232  [Drosophila yakuba]
MPNISKVKDLIKPTQITTRAVSKKKVVSEKEVQAGSLSLRPRVPSASSNTDSSTTSSPPLTANMAINPVELVASMRIPDI
IRFLPTYSGDPLTLNEFINNVEEVILMIRGTDQTPYGQMLLRAIRQKIEGKANEAVIAAGASLIWDEIKEALIRHCRDRR
DEETLMSELFNLKQRQLPLQSLYEQITKIKLALFRLIEAEETEALTIKVRQKVVSQTVLTTFLGGLRGNLGGIVGAWRPR
DLGEAYGVAIKERNLYFSEGSAYNQQRQPMRQNDRFRPNYNQYQNRDRDQFQNRAYNQYQGRDRYQYQNRDNNRYNRNTY
ENNNRNSRYPAILPNDNTPSTSNAAAKKNANMNRPSTNGQRLFNIETNTKTNDTESSHNFEEDGNFRTGASKNKQDS
>Gypsy-25_DWil#LTR/Gypsy 241-4303 via tfasty with Gypsy2_Dpse, 2 frameshifts and 1 stopcodon. [Drosophila willistoni]
MSCLNDLISGTLKTGKVDNIRALHKFIYESEGDRNNRKRIREFSGFDYDEANAKYKAKAEYVRRNLTNGDLVSICNVLGI
KYSVDDLALHIFTNLKMNNLLASQDEDELDDEVDDEIDDETDHESVATERNVATENNLRNIPHERASENNNDEYRRINEE
RDRMMTPRFAISFRDVEENIRIFDGTNTIAVEVWINEFNEQATLMCWNDFQKFLFAKKALKGIAKLFVLSERGINSWNSL
EKELLSEFKSCVSSKDIHEQLMKMKRKNNECVYEYFYRMKDVASRGQIKDDSLIEYLIDGIDEKSENKSILYGAKNLIEF
KEKLKQYKIMSEKESKKGNGKYKNDENSARVKNKMMKTNNKDDVVCYNCGDKGHYSKDCDDKGKGRKCYKCNEFGHIAKN
CNKREMNGKFEPNTRSFKSKEEKTTCKVIKIDNIECKALFDTGSKFCIIREDFYKRLKQPELSSFDGLKxKFSKIDVANN
KDELNIDECASTSAKKEVFDLISNYQPVAIKTTNVEMRIILNDDSPIFARPRRLALKVNEKVEEWLAEGIIEESTSEYTS
PVVLVKKHDDSYRLCVDFRKINKVCVRDHYPLPLIEDQLDRLQDATIFSTIDFKNGFFHVAVAESSRKYTSFVTHCGQYQ
FKRVPFGFTNSPGVFQRHVKRGIALPYVDDVIILARDEEEAVKNLKEVIVTCEEYGLELNLKRCHFLKKRIQFLGHIVEN
KKIYPSPDKIEAVAKFKMPQIVKQVQSFLGLTGYFRKFIPNYACIAKPLTELTKNAQKFVCGPEEENAVQILKKLLTENP
VLSIYNQSYQSEVHTDASIEGFGAVLLQRCPDNGELHPVYYMSRKTTDAQRKYSSYELEILAVITALEKFRVYLLGMHFK
LITDCDAFTKTLEKKSLCTRVARWVLFLQEYDFDVLHRSGTRMRHVDALSRYPIMQINDYGISVGIKKAQSQDEKIRAII
EVLKDNSKTYDDYFLKADILYKLVNDVDLIVVPNAMQKQIIGQAHNKGHFRAKKTKDLICREYFIPHLEEKIQKYIECCI
PCNISSRKVGKQEGLLHPLQKDDIPLLTYHIDFLGPLESTHKDYKHILAVIDAFTKFCWLYPTKSTTSNEVITKLTIQST
IFGNPAFIISDRGSAFTSQDFLKYCDNEGIKHVKTTTALPRVNGQVERLNAIIIPVLSKLSVDDPTKWYRHVSKVQQAIN
STYTRSIGTSPFELLTGVKMRTNDDHKLRDLIDQETKADIYRRKSELRAKAKAHISKIQDENKKYYNLRRKQARSYSVGD
LVAIKRTQFGSGLKLKLKYFGPYQVKKVKHNNAYDVEKVGKCEGPKVTSTCAEYMKPWSPNRDDEEDDPAFGSNA
>Gypsy-21_Gav#LTR/Gypsy 50-4225[Crocodylidae]
MEHQTVLTGTESLQQAMSLMAQVLQQQQASRQTAIQEHLLQQQVWAQRGPWDIRMPKMTKEDDPEAFLEIFERTAIASGL
EKARWAGQLGVLLIGQAQAAYRAMTRLDAQDYDKVKGEILQRLNITPERHRQAFRGRKRREEKVPRLLWQSLIDLMNKWL
KPEVNSKEEICDQILLEQFIADLEEDTQRWVRCHCPKSSREALQLAEHFDMAQGEMRQDRGTRGTGTGYGQEANRKGEKE
NKGNKKGSPAGLVCFTCGRRGHIARNCSRGLRPIPGPRGTVTEPADHRTGPGEAQEAELMDCGVGDSSTGMVQPLPEVTV
WVEGRPVQAVVDTGCAQSLVRPSLIAWKQAPRYAGVQMVCLHRQKAYYERRLLHVQVNGVSRRIPVGLEEKILYPMILGR
DWPEIFEVLASLHNSEGTREGLVGAGPETEEELEIEALASSSQFREAQESDEELRAFRETEQVRIDQQVTLPEQNNPVPR
CEIRNGLLYRIKRGKAEGEEVAQLIIPRPYREPLLRLAHRNPLGGHLGKNKTEARLARWCFWPHMYEEVEGFCQVCEICQ
KVSTYKPPKVPLQPMPVVREPFARVALDVVGPLPRSVAGHQFVLVLIDYATRFPEAIPLRAVTGPRVAEELMKWVAKFGI
PREIITDQGSNFMSLVLGSMCKVLQIRHLRTAVYHPQTNGLVERFNGTLKGMLRRCAQVEPKKWNLMVPPLLFAIRDAPQ
ASLGYSPFELTFGHRPRSLLDVVREGWEADPNTGRGASEYVRDLKERLQLVREVAQENLKQAQSKQKERYDVHAKERELK
VGQKVLVLLPSSTSKFLTCWQGPFTVLRRVGPVDYEVLRPGAKREKQVYHINLLKEWHEPEGLLISPDPEPEEFGRQVTD
NPGDPRDGDRVPVGRQLEVGQRKQLQGLIKEFGDVFTDRPGKAAGVEHKIVTKEGHVVREKWRRIPYHRYQPIKEELEKM
LAQGIITPSRSPWRSPLVAVTKPDGSLRLCVDFRKLNALTQFDAFPMPQVSELVERIGQARFISTLDLSKGYWQVPLRKE
DQPKTAFGTPWGLFEFKRMPFGLNGAAATFQRLIDWVLAPHQGYASAYIDDIVIYTESWEQHLRALRAILLELRQAGLTA
NPKKCALGKRETKYLGFLVGQGRVRPLADKVKAIREYPAPTTKKQMRAFLGLASYYRRFIPKFAEIATPLVETIKGRKSY
GIEWNADRRRAFEDLKQALCQEVILHTPNFALPFTLQTDALAFALGAVLSQDIDGVERPIAYASRKLNEHEKRYSTVERE
CLAIRWGVDYFRYYLLGREFKLITDHAPLRWLNTAKTDNARIMRWALALQPFRFYVAYRPGKVNTVADFLSRCDEESPNE
GTRGEEEEEGNKANENIVRQEGEAPCGVLRGG
>Gypsy-21_DWil#LTR/Gypsy 259-4261  [Drosophila willistoni]
MSPPLRTPAKSKNEKNEKKIVEKKTLNETFGLVEDEESIKNNMEVKDVSDVEKSDPRDLDIKMQQLIHMFSPKIEADERK
YAEVKINPEHFEKVVCVFDGYNVPVEKWFENFEQNAEAYELTDKQMYVQARNKMSGAAQLYLESETVSDFQSLRQMLCCE
FESNLSSADLHQQLRDRKMHSGESFHEYMLNMRKIASAGKIEDAAVIRYIVDGLNIKSEFKFSMYNCKSLKERIKERMQY
GVFEHVKKFDNIEKNNRKITSIAKVENIKKKEYCFNCGSSEHKRKDCNSADRKCFSCNESGHISTNCPRKLSAVRKINIQ
KRVKSVSLNGVNVDGLIDTGSDVTIVKNSFLKYLGKIDLKESCLMLCVLGKSQTKAKSFFETEVIVDNLKTQQKFLVVES
NTMDCDVILGYDFVEKFRVSIDERGYTFMSLVEDTKSQEEYADNWYNVFDISCSYSAPPQYQKQVEALIQDSFQLNDAEK
VNCPIELKIVPDGAIIPFRQSPSRLSSPEAGAVKNQVDEWEENGIVRKSTSNVASRVVVVKKKDNTLRVCVDYRKLNSIV
LEDCFPVPLMDEVLEKLQAASFYTIMDLENGFFHVPIEESSKSYTAFITREGLYEFNRAPFGFRNSPALFIRFVNHIFQD
LINKNIMQLYMDDIIVYAKSANECLNKTKLVLETAAKYDLKIKWGKCSFLQKRITFLGHEIEDGKIWPGKDKTMAISRFG
IPTNVKSIQAFLGLTGFFRKFIPQYAQIARPLTKLLKKDVKFIMGPSELQALQQLKTVIISEPVLHLYSREAPTELHTDA
SKDGFRAVLLQLFDNNLHPIYFWSKKASEADSKRHSYILEVKAAYMALKKFRHYLLGIPVKLVTDCIAFKQTTSKLDIPR
EVAQWILYLQDFNLNVEHRSAVKMQHVDCLSRFPQSCLVVKDEITAHLKKAQQTDDHIIAIIEVLKQQPYKSFNVKSGLL
FKEVEGNELLVVPKLMEREIIQRSHEVGHFSTRKTMHAIHQQYWIPHLESKVSRLIANCIKCIVHNKQLGKKEGYLHCIT
KGVTPLHTLHLDHLGPMDNTSKQYKFILAMVDGFSKFVWLFPTKSTGQEEVIKRLNEWTDIFGFPERIISDRAVAFTSNA
FKEFLRSNDVEHVLSTTGVARGNGQIERVNRCILSIIGKISADEPTKWYKGVSQVQKAINTTMHSSTKMSPFEVLFGTRM
RNHIDDRLLDILQEEQVDQFNDERQKLRQEAKINIEKAQATYKRNYDKNRKGEAIYQVGDMVAKKRTQFVAGRKLASQFL
GPYEVIKAKRNGRYDVKKATNGEGPMVDYMRLWRYVAENDELLSSESEDDYQEGR
>Gypsy-23_AMi#LTR/Gypsy 46-4230 1 stopcodon.[Crocodylidae]
MDTQEPTXWQQAHXLTLHLLQGQQAQLEEMMRIRTQEAEARIQLWARQQDLCEKLAEQQTFGPREGGMTGLPRMTREDDV
EAYLEAFERAATAAKWDPGSWAAKLGPLLIGPAQAAYRALNRTEAXDYSKVKTAILYRLEISPETYRNRFRAKKGLESSR
PRLLVQTLRDLAERWLQPEEHTVKELVDQIVLEQFLTDLTGNTQRWVRRHQPKTVEEALHLAEDYTVAEGEGENPERERG
RTTIPHKTTSLAAPLRRVETTRKEGRPGNTPEVICYRCGERGHISRFCPRTTRDSSPRVEGHDEKMDCSFGRHQGXGQKN
KPVVEVRMGNTIIPAIIDTGCSQSMVRGDLVPPHLGAPSTPVSMVCMHGTVYTYPRRRLELSVLGRTEEMLVGLTKTLPC
PMLLGLDWPHLGEVVRQQMTDSPGTRERKPRELYFGDEEEELEINQLIEGGNFPQEQRQEPLFQNLWKTQEEEATRGAGP
APKPPRNPRYEVRRGLLYRVEDLEEGGERAQVLVPRRYWEGLLRVAHTLPMGGHLGRDKTEARLKRRVFWPGIFKMTEKF
CAECPECQRTGGVRPARVPLIPMPLIARPFDRIALDIAGPFPRSKMGYQFILVIIDYATRFPEAVPLRSVTAPAIVTALL
RWIAWVGIPREILTDQGKNFMSKILKGVCKVLRIDQLRTSVYHPQTDGLVERFNRTLKGMLKACIQGDAREWDALLPPLL
FAIREAPQASTGFAPFELVYGHSPRGLLDLVCEGWTQTQREEPQXRVTGEFRERLQKAXEIAQRHLSQSQERQRQQYDAR
AVERELQIGDWVVVLLPDSTHKLTARWQGPFQVTRRMGPVNYEVLRTNPTRRKQIYHINLLRKWQRGEGWLVRQEEEEEE
EATTVRRLTGTPEAPQVDDQLDLGRQAEVKALIREFQDVFKETPGEAKGVCHYIVTPPGRIIRDHWRRLPCHLWPVVHQE
IKQMXERGIIEESQSPWRSPIVVVPKPDGSIRLCVDYRRLNEVARFDAFPMPQVDDMLEKIGQARFISTLDLTKGYWQIP
MAEGDKEKTAFGTPWGLFQFRRMPFGLHGAAASFQRLMERILAPHQEYAAAYIDDIIIFSPSWETHCKHLRQVLNSLRRA
GLTANPRKCALGKRETQYLGFMVGQGTIKPVTEKVAAIKFSEKAAPLTELTKGRRNPIAWNPGAIQAFDQLKEALGQHPV
LYTPDFEKTFCLQTDASAVALGAILFQKDQGIERPVAFASRKLKPAETRYSTIERECLAVRWAIELFQYYLLGRRFVLIT
DHAPLRWLRTAKLNNARLMRWSLALQPFFFSVEHRAGRRSGNVDLLSRPGDDPEEKKNAATNKRDTRKXYTKPDLQTGTR
DRKMKRTG
>Gypsy-24_BG_gag#LTR/Gypsy 54-1433 via tfasty with Gypsy-50_BG_gag, 1 stopcodon. [Blumeria graminis]
MDNITSQPVPIPNFASFRRAEPTTESFNFASNLCGKEFGNIGPVVISASDTAPILKYIQANPAIALLELQRAFHIAGNLI
ARHRDLEISDKKTKEKIDILESNFNDLQFEHNNLSTQHEAEVKGAQKLISALNLPELMSLTSKRRELSRPYMDPKFSGAD
NKLLTPFIRDLRRKLEVNADWWDTERLRMFYVASCFPEGSIAKKRVDSGFKSDGKIIYKSVEDIISLLKQTFGDVDESAT
AQRELKGCFQKNQPLATFLPHWMSLSGLSGFNDSALISFLKDALHPDINNRLSFIKKSDIPELLHEFIALVREQDEILRN
LDPKYFLKNCRKNYNYAYNLLTTTPTPLPVPQNTELTTSQGGDAMDLSSILVNGLQLVSEWTAKDVGRKPTNDVEKAHRR
AYNALNNLxIVCDSKDHIPRDCPASFQNRKKKKTENLYSTVIAEEGKRKDSVRLQEAENV
>Gypsy-23_SP_gag#LTR/Gypsy 445-1509  [Strongylocentrotus purpuratus]
MSTFRLDLPEVFTGEDGRNFGQWVRRLEVAVEVLPQTERKLHLILPSRLAGAAFTVWESIPSTEQQEYSVVRKKLSAVLG
NTNYLTTFKSCIDARKRQQNEVLEVFAAAITTLVEEAFPNYDTAGKDGEKFRRFLAGIDKPLQIRIHEMGATSFSEALDV
AVRVERANRLGQPSVATDFTIASTSPKRDATSATLEKVLQRLDELELKLEKRNSTPRPQYSDRRLQPSRSPSPYDHPSRS
NRRYSDDRWRQPSRSPSPYQPHQRRFRSPSPLRHQRTQSPTHHRTLRGSTPPRRNAYDDGRSASPRQSRYSNQANWQSSR
SDDRHASGTRDTPYHQLNGEQHRKVRFDDQGNYW
>TY3_pol#LTR/Gypsy [Saccharomyces cerevisiae]
MDNTAEKTIKIQNTKVKTLFDSGSPTSFIRRDIVELLKYEIYETPPLRFRGFVATKSAVTSEAVTIDLKINDLHITLAAY
ILDNMDYQLLIGNPILRRYPKILHTVLNTRESPDSLKPKTYRSETVNNVRTYSAGNRGNPRNIKLSFAPTILEATDPKSA
GNRGDSRTKTLSLATTTPAAIDPLTTLDNPGSTQSTFAQFPIPEEASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCT
LPVWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSP
VVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEY
TVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGY
SIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQDKAIDKLKDALCN
SPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKH
FTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAVYTITPETSRPIDTESWKSYYKSDPL
CSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHTLFGGHFGV
TVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVD
RFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTI
QTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTI
QTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRV
INVQFLKKFVYRPDAYPKNKPISSTERIKRAHEVTALIGIDTTHKTYLCHMQDVDPTLSVEYSEAEFCQIPERTRRSILA
NFRQLYETQDNPEREE
>Tor3-2_pol#LTR/Gypsy gi|49035830|gb|AAT48687.1| pol protein [Oikopleura dioica]
LIISDASIKFKAAALGNREYDSNTDELSNVTISSYYSSAFTEVETWLSSRSRELLSVAAALNNFSSLFKDCTRILVLCDH
KSLSGINHSPKLPATSETRVRLAYARILSYQNLTILYRKGQDPLLRVADGLSRVNINDKPIKCEKFEKSAFHPKVYIRST
AKNNKNGKNTAIKAKPTVSSILPAPTVRTAEKSEAKAGKEEGEQDQISWITKLIEEGQKSCEKLQKIRENIDKEERYRIR
SNLLQMMRKQKYWTIIPESSHHIVKTIHDLSLHPSAKNMTKMLKNSQIWVVNLKKALETIRGNCITCAAKTSRRKESIKT
CIEPSLSAFEHVFTDTIAFSVGKSQIFFQSFLDLFSKHGTLHRLANKQAITVARSTQRFILRYGLQNRATLTTDCGTEFI
NSVMENLAQIHGIRLSKTSPTNSSGNRVERLHKSVRALLTNPLTLTNISDSVEIAVSTYNSMPSEALDGFSPLEVLLGTP
VKALIAQDTDPTSRETTVAERIDKIRANHQSVAKFHMLKFDEIGDFEKSGLKVGDYVMLADVKTFGHQGNKGPWKIIKKS
PRNAYTIEDPLIGNQLVRPGKRLVRLRLTSDEKSEYDSRKPLVRDRNDITRSPKNPEFSIFNLGKLLENLNPEKDKKSVE
QTDRWNNPSKVQDSGKGFPDSEPREDRSGGSH
>Cigr2_pol#LTR/Gypsy-Cigr CionaInt  from_retrobase [Ciona intestinalis]
CVASWNENVKSNFFKRAITGEKADSPVVEDEARWTHAFYVLCMLQGLSNPIKFLVDSGSSATILDRSVYEQLLLCGAIGQ
LTPCGVILTAANKGNIKCYGSVRVCLNFGKVQTNVVVLVADIGTPRGILGSDILISEGCLINFKTRSLLINGQTINMESC
STTHQNNPSRSTTKSALTLHDPFPEHLKCLLEPLRHLNVAERGAVRDLLAQYEDVFAKPNGELGRTQLIKHNIDTGTSPP
IRQPPRRLSWAKKQIVDAELRRMLALGIIEPCVGPWSSPIVLVSKKDGTPRFCVDYRKLNAVTRKDAYPLPRIDDILDTL
GGAKYFSTLDLASGYWQVEMNDADKAKTGFAIPGKGLFQFKVMPFGLTNAPSTFERLMERVLHGILWNTCLVYIDDVVSF
SNDFRTGLQRLRIVFERLRVAGLKLKPRKCQLFATNAKFLGHMVSSDGVRCDPSKVEAVREWSTPTTVREVREFLGFASY
YRRFIPNFAGVADPLTSLTRKNRKFVWNNECTNAFEQLRSMLCDTPVLTYPMHLKQFILDTDASATGIGAVLSQKDSAGR
ELVVAYASRALSNSERNYCATYRELLAVVHFFHHFRHYLWGASFILRTDHSSLQWLINFKEPEGMLARWLSVLGTYNYEV
VHRPGVKHRNADGLSRQRCRRAECHDCQRLEVSTSPIPVSVIRGQQTQPVSWWESWTTADIRKWQNEDNVLGPILQLKSQ
SQYPPSREEFMRLTGSDHFFRCWDQLAVMNGLLFRVWHADEEGQPDSHLLVVPTVMRRKIFHHLHVLRTAGHLGIVRTTA
QITRRFYWPGLRIGVRNWCRWCTACAKRKPHHGRHRSKLQQSTTNAPMERIGIDFLGPLPVTKNGNRYVLVVLSGPKVLP
CLIKKPNTTAETLVFNVFTRFGLPRFIHSDQGRDFESHLFQEMCAMLEVQKTRNSPYHPQSSGLVERFNRTLLQMLSMFV
NEHHNDWDDHLPYIMMAYRASKNESTGFTPNYLMFGREIAVPIDVAYGLPTMARRPTCPIEYVERLRQRFQEGYTRVRMS
LRQAAVRQNRNYDRSAAPLSFMSGSWVWYYYPPYGKKKLGKGWVGPFLVIQKMSDNLYRVQKSADHPSRVVHVDHLRPYE
AEYMPADWTRGSQFGQLHDAMNEKRQHKRRPLSQTRHNQTCLDLGGFGDLQYASTTMWSAECRHTFLLIVPCPVCFLFF
>Troyka-1_BF#LTR/Gypsy-Troyka 85-4932 [Branchiostoma floridae]
MASAAPRIPKQWQLTKTETINSFESWRANLIYSLSLDRNFAPFLVNGVTWQKASVENRGLQADGEAVPEASRRTAAQKAA
SLEMMLGQIAIWCPVISKNTIVKASTSLSHIWQAIRLHFGFQSTGGYFLDIANIKQDTNERPEDLYQRLTAAIEYNLLSV
EGGITHHGEVVSADEEVSPSLENMIVLLWLQLLHPNLPALVKQRYGSELRNKTLASIKPEISLALASLLDELNTTEDIRS
LRLSQARKPSPRFRPPPRPQRPKPKAQYKACPLCQQAGRPGYNHFLSECRYLPEQDKQYIIRSRVVEVDEDEHFDEPDYT
DQDEPQVLVAETVTPPKSIPSQVSRVTVRPSPYMDAFHHGQSVHILLDSGAESSLIREDEAHRLGLQIVPNYSQTPSQAD
GGRMSGILGECKTTFSRHTLPLQFDALVVKDLASPIIAGSPFLETNGFTIDFKHKRIQLPDGSTTDYSPVRKPSQPRIHR
ISTNLLRMQDRTTTVWPGDFVDLALPVEITDYQDVVLEPRYDSLSPEQMKAFEQGTYRNVAGHIRVPNVSSAPVHVAKNM
HLFNAVPVVPVEDYPLDGQVYDKSPTPAHPPTPFSDSIQLDPDHTLSSTQRYQLSSVLRTYDQVFDTAFPGYNDAVGPIR
AVVNMGPAQPPQRKGRLPLYGRNRLVELQQKLDELETRGVIATPESADTVVEYLNPSFLINKSSGGHKLVTAFTDVAKYC
KPQPSLLPDVNQVMRQIACWKYIIVSDLTSAYHQIPLHVNSRKYCGIVTPFKGIRVYCRSAMGMPGSETALEELMSRTLG
HLLMRGAVAKIADDLYCGGNTFEELLINWRDVLTALRKCDLRLSPSKTIICPRSTTILGWHWNQGQISASQHTLCTLATC
PAPQTVTALRSYIGSYKALSRVIPGTSVLLGPLDNIIAGQSSKDKVQWTDETMLAFRQAQRGLQAHQAVVLPRPEDELWL
VTDAAVRPTGIGGTLYIRRNNTTKVAGFFSAKLKPHQRRWLPCELEALAISAALKHFKPYFIQTTKPAFVLTDSKPCVEA
VGKLRRGEFSYSPRVTTFLSAVSQFPIDVKHISGKHNISTDFASRHPLECHEDKCQICSFIHAISEEPVINTSTLPQGPD
LNSPIYTSRQAWSNIQSSCRSLRRVFAHLRQGTRPSKKETDISDIKAYLSKVSITTGGLLVVPNRDMFGVTRDRIVVPRK
VVHGLATAIHLKLNHPSRHQLKTVFSRYFFALGMDTVIQKVTEACDQCASLKCQIPVPPIFTTEAPPQTVFTSFSADVMK
RARQNILVVRENSTSYTCAHIIPDETSTALRDGLISLCTPLRLLDGSPAVIRCDPAPGFQALVNDPWLKDNRLQIEIGEP
KNINKNPVAERAIQEVRAELSKSDPLGQPVSPAELAVVMARVNAKIRTNGLSSREYLQQRDQFSGEQLPMSDRTLLKEQH
HRRRSNHKPSIKSKSPRTKAHATTPSIAVGDLVYLNTDRDKTKGRNRYLVTNVEQNWIHVSKFTGHQLRSKSYKVRPNQC
YLVPNQVTLQNRRPTHDEADSDSTDTDEVRPCPEVTDFPVPDPPPDFLVPPDPPPVPEPPPAAEPHLQPATPEPHPPPRH
SKRTVRPPPYLQDYVM
>Gypsy-29_DR_gag#LTR/Gypsy-Cigr 62-1297 [Danio rerio]
MWKKTQGKIKSESKDQSQRFRGALDGSMSPPEHLIKQEDRWESHRARVIDATRRMAADAGLSLPEPSAAESYRTVTRETN
KHGGAHVTTRGTDENKHSSPQGLALSADVNIRRGTFGTPPGADKNGHDGAHGAALPDDVNKHGGAHGSALSADAYECSGG
RGATAIVTVKTPKFSGKADWEAFHAQFELLARAGGWSEDRKALELAMCLTDDALSCLLLLSPEHRHDYNALVGALKRRFG
QFEQSGLLRSELNNRRRLPGEQLRVLANDIENLTRRAYAHMPPSVQGELARDQFVQALAPVELRRQTQLAHPHTLQDALE
MALEREIVCGTPKLEESHHNIVPVRSADVGEGLSERPAWVSEITELIRSVTLQAEQRPRTRPRVCWGCGQTGHLVRQCPN
VAGNQGNGLGSA
>Tor2_env#LTR/Gypsy gi|49035817|gb|AAT48679.1| gag protein [Oikopleura dioica]
MLKAWSEDLEKEVAGMDASDDARDDKKALLKTIMAKLKSAIDKAPTSGSKLPGSDFSRDQTSRLRSSESALSSLEFTGRD
YDSNCKFLSTVEKIFDAYIADDHDLEPIFVKQVKLTFADNPYSRLKAAATPPATWDSLKSWIAENFDSGLVSIQLLARAL
ETEYKKGSCWKSFATDVDRRMDTASKAVLTQLRKNKAATNGKKLDDAANDPDVTDIFSFFSASIVADRLKSHDTAVHALM
AQEWRSINCAADIATKAEFLISQTGKTATAYFTRQFANSSQSSGEKKHKPAKQPDENKGRKWRDPCKFGMECRKGKRGDC
DLYHGKGFKVNDKIEKKDSKETQKYAAEIAALRSKLAAAESSKPTALPIESCSFFP
>TABARE_p1#LTR/Gypsy 267-2060  [Nicotiana tabacum]
MNKEEFALEEKTYENPEGLKITIIFSNLGRRYKKIGNNLNLMLEKETVKLEDSLTAMVRITKENEEIDRKREIKEIQQQA
KEKIQQIEEVKNTKITELEKELEMLKQMYANKLKEKEKRKEEEEELKLTNEIERFKLQLEEVQESPSKISINEINDQSDK
DTELGENYSETSETYTELIEKTEKIKINPEINTGDMNEDKPSISGIKNPKQLNPTYYRVSYDAYDRNKTLWDKRLNKKWA
PRQITEQYNFLDLDCVADINKTIQLWIGYISKQLIDNKITITETPGYIERTLIGTVKLWLQNLSSESLDTLRSNKKLDGT
TTTTVTDILNKYEIAIRNEFSSMTTEVEEQNKEKITNRNLMTKLAICNMCYIDEYTCAFRDYYYKGTYSPDESKEIRKLY
FTKLPEPFSSKIIKSWNEAGLADTLGVRIKFLQNWFIELCEKYKENMKMEKILVKNLACCKSRIAPQFGCTDKYYKKEGK
KKKFKSKYSKYKYRKPRRRYYVKNYKHKKPYRKKKKLTECTCYNCGKLGHLAKDCKLPKNPKKKQITEILIDNDKYTQVE
YVDYELSSEDSIYEISENEFSENEINKDIEESDEENYD
>SZ-54D#LTR/Gypsy 180-4416 via tfasty with SZ-54A, 2 frameshifts and 3 stopcodons. [Oryza sativa]
MAPALPLLASTTxATSAIAMGAALPITTSAAATATVAAAMASHGHGRPGGHRFDGDGDRPPRYHKLDFPKFDGRGDPLPF
LNRCEQFFRGQRTPEDNKVWLASYHLLDGAQQWYTRLERDHEPPSWHRFSELLNMRYGPPLHSTPLGELAACRRTTTVDD
YAERFLDLLTRTGYLSEDQQVQLFTVGLQEPMSLDVQMQHPTTLEEAMSLARSFERRELAARPPRPPRHAGRGILPLPPA
ANPQAPAPEPATAAxPAGTLTAINRTVRRLSPEEMDERRRQGLCFNCDEPYSRGHNRLCRRLFFLELGEDDTDNDSATDQ
ADAAATLRISLHAATGVRASDAMHITAHLGDTDLYTLIDSGLMHTFLSQDTAARVGRAPQPRMGLNVTVANGDKVACPGV
FPDMPLQIAGEEFATDVYVLTLGGYDLVLGTQWLATLGPILxDFTVLTMSFWHRVTLHGLPGHQRPRALACAPAALLDSL
LEEFADVFTEPTGLPPARDRSHRIQLLPGTAPVAVRPYRYPVRHKDELERQCRVMEENGLIHRSTSAFSSPVLLVKKADG
SWRFCVNYRALNERTVKDKYPIPVVDELLDELHGAAIFSKLDLRSGYHQVRMHPDDIDKTAFRTHDGLYEFLVIPFGLTN
ALATFQSLMNDVLRPFLRRFVLVFFDDILVYSPTWTSHLQHLRTVFTALWAAQLFVKHTKCSFGDPSVAYLGHIISQHGF
AMDAAKIQAVAEWPRPRSPKELRGFLGLASYYRKFIQDFGSVAAPLTQLLRKDSFAWAPATDDAFQRLKLALTTTPVLSL
PDFNRPFVVECDASGTGFGAVLHQGEDPIAYFSRPIATRHHALAAYERELISLVQAVRHWRPYLWGRQFIVKTDHYSLKF
LLDQRLSTIPQHHWVSKLLGFDFVVEYKPGKQNAAADALSCRAAPDSQAFVLSTPTFDLLKDIRTAGDTDPALQALRDEI
NSGTRTTPWAVIDGLVTYKRRIYIPPGSPWVSVVVAAAHDDGHEGIQKTLHRLRRDFHTPDDRRVVHDHIQGCLTCQRNK
TDHLHPAGLLLPLPVPSAIWSDVAMDFVEGLPRVGGKSVILTVVDRFSKYAHLIALAHSYTAETVARAFFVDIVRLHGVP
ESIVSDRDPVFTSAFWTALFTATCTKLHRSTAFHPQSDGQSKAVNKAIAMCLRCMTGDRSRQWLRWLPWAEYIYNTSFHA
ALRDTPFKLVYGRDPPSIRAYDASELRVAAVAQSIEERDAFLADVRLRLEQAQQYAKRYYDQKHREVSFEVGAWVWLRVR
HRVPASLPEAVKGKLRPRFYGPYRVVAVINEVAYRLALPPGTRLHDVFHVGLLKPFVGVSPSAPLALPPIQHGAAQPVPR
QVLRARLARGVRQLLVQWEGLPASATSWEDLDDFRNRYPSFQLADELLIEGGR
>TAT1_ATH#LTR/Gypsy 60-1286 [Arabidopsis]
MSNTDDQSSGGQASTLDNIKLLLQQLSEKTDRQQLAVTTLSDKFVSFQERCNGQLAALAVNHSEIRSAHNAYAERVDSLS
AGTTRTTGARTRLNFQGAASPSVQNSQEASGQQSPSPPVDVGATSTQNPVNQSPSAGLAAISDETIAQAPAPLGPAIRLP
NSNPRPEPSTVNSELQNLQDQIWAMNTKVHQATTSAPEVEKVVEATRRTPFTSRISKLRIRDFRDFKLPGYNGKGDPKEY
LTSFQVIAGRVPLEPHEEDAGLCKLFSESLSGPALTWLTQLEEGSIDNFKQLSTAFIKQYGYFIKSDVTEAQLWNLSQGA
DDPLRTYITAFKEIMVQVPNLSDSAAQSALKNGLWHESRFRESLTVNRPESIQDALHRATNWINAEEERAFLAKRFNAIT
KASPPLGT
>TEKAY_ZM_orf1#LTR/Gypsy 155-1150 via tfasty with XILON1_ZM_gag, 1 stopcodon. [Zea mays]
MVRTLQTTWVNTSYAPPPRQIPVYPVVVEEVSVDLPYIRVENGVILEDSSEEQLPTPTPLAESLAFAARSWTSAPLAPDI
QAPAPGGDDSDDSGDDDDDGNEDEEEQVNEEANYAQQDYFMGFGPVIEHYTSMFETGHFPNLLQEVLHALGTYVRPLYET
RQVSEPPRACYYITRIHARVMDAGDRGFKTLSAHESLTPLSTYTASFSDATRRTLWSLSHTYRQQLHDTRFRHLPLCLSG
GSQTSIVPGGASEECLNTLAGVVAGLNTDLDSATLDLSRVHLELEDAHARIAALEAQLQGxDPPEAQVPAMALSPPRKRL
RYGEPGSVTRLL
>TCN1_pol#LTR/Gypsy 1468-4950 [Cryptococcus neoformans var. neoformans]
MLLSAKVEEGSREQERTIKPANTDSCEYLQTLEDNNKNNKNQLTIDFLFHNNVYQALIDSGASTNFIDKRFVQTFNLKTT
KIEDSIPLYLFNAAGQRTIIEEEANILVNFQKPFGHTLLRLLITDIGSYPIVLGITWLQEHNPSISWETLSIHPPVSQTT
SANLAMVITNDKPPKENTDAEIVPKEYHQYLDVFDKKSADTLPEHRSFDHHIPLEEGKNPPFGPIYNLSETELEALREYL
DENLKKGFIRPSESPAGAPILFVKKKDGSLRMCVDYRGINKITIKNRYPLPLIAELLDRLKSAKVFTKIDLRGAYNLLRI
KAGEEWKTAFRTRYGHFEYLVMPFGLTNAPASFQHLMNHNFRDLLDIFVIIYLDDILIYSPDLETHQSHVIQVLDRLRQT
QLYAKASKCEFHQTSVEFLGFVVSDQGLSMDTKKVKSITEWPTPRNLRDTQSFLGFCNFYRRFIKNYSSIAKPLIDLTKK
DLPFVWEEPQRTSFEALKKSFTSVDLLRHYDPTKQLILETDASDYAIAGILSHEIDKKLEPVAFFSHKMLPAELNYPIHD
KEMLAIVSAFKEWRHYFEGARETIRVYTDHRSLEYFMTTKQLNRRQARWSEFLADFDFNIIYRPGVQGTKPDALTRRHDY
HPLEKGSSLTTAANPQNFQTLLRPGQYLGTATTGLDRLEISSPIKSLLKTGLETDESAKPFLDKANHPSEAHPYTRDDEG
LLRYGESFYVPANNELRTLVTKECHDALTSGHPGRRKTIQLIRRHYWWPGLKGFVNHYIDSCDLCCRTKTRRHQPYGELK
SLPIPPYPWSSVSMDLIEQLPPSHGYNTILVIVDRLTKMALFIPTTTSLNAEELAQLYVTHVFSKHGIPTSIVSDRGSEF
TSRFWRAFTQLLHIELELSTAFHPETDGQTERVNQVLEQYLRLYTDYKQKEWAPLLPVAEFTYNNTPHSSTTMSPFFANK
GYHPRASFTPDDNVPIFSPPARASITDLSKLHEHLKIEMSKAQESAALQFDKHRAPLPEYTIGDKVWLSARNIKTKRPTK
KLDHRYLGPYTIIARVSSHAYRLELPKSMRIHDVFHVQLLEKYIENEIPGRTQVAPSPIEVEGDLEYEVECILDHRFYRK
RRQFLIKWLGYSAEHNSWEPETALENASEIVDQYKSTHRL
>Troyka-2_BF#LTR/Gypsy-Troyka 74-4627 [Branchiostoma floridae]
MASNRTRKQWPLTTSETITSFESWKNNLVYGLSLDPNFAPFLAPGATWQKQSRGVENRGLVADGEDVPEAQRKTAAQKAA
ILDMLLGQIANFCPIIARSRICKASVSLNDIWQTIRLHFGFQSTGGYFLDIANIKLEPNEKPEDLYQRLCAAVEDSMLTA
AGPITHHGEAMTADEELTPSLENFIVLTWLKLIHPDLPALIKQRYGPELRNKTLASIKPEISLALSSLLDELRSTEDIRT
LRLTQNRQPYRKYPSTRPQGAKTKFKTNSNTKSSPATCPLCEQVGRPAFDHYLSVCPYLPAKDKKYMVRTRAVEIDDVYD
VDDDIHSDEEEEPSICQAKTISPVPEPSPHVSRVAIRASPHLDAFHHGQTVRILLDSGAESSMIRADEAKRLGLRINPNT
TQTPSQADGGRMSGMLGECTTTFYRQKLPLRFEALVVTDLASPIIAGSPFLEANGFTIDFTQRQIRLPDGSISSYTPSVK
RHNPHIHRISHNLIRMQDKSTTLWPSDFLELQLPEDLKDYPDVALEPRLDSLSTQQAKAFHQGTYHNIAGYIRVPNISCA
PVXXXXXXXXXXXXXXXXXXXXXXXXAQTVVEYLNPSFLVNKPNGGHRLVTAFTDVAKYCKPQPSLLPNVNMVMRQIACW
KYIIVSDLTSAYHQIPLHPNSRKYCGIVTPYKGIRVYCRSAMGMPGSETALEELMSRVLGDLLMRGIVAKIADDLYCGGN
TFQELLANWKEVLTALQASDLRLSPSKTIICPATTTILGWHWNQGQISASQHTLCTLATCSPPPSITALRSFIGSYKALS
RVIPGTSVLLGPLDNLVAGRSSGDPIQWSDEMLEVFRKAQRGLDQHQAVVLPRPDDELWLATDAAARPTGIGATLFLRRN
NNTRVAGFFSCKLKPHQRQWLPCELEALAITSALKHFKPFFIQTTKPAFLVTDSKPCVQAVEKLRRGEFSHSPRVSTFLA
AISQFPISVQHISGKHNLSTDYASRHALECSDSKCQVCSFVHALSEEPVINTTTLSSASNLDLPVYTSRQAWHAIQNSCS
SLRRVFAHLQQGTRPSKKDTKARDVKSYLSRVTIAPDGLLIVPNRDMFGVTRDRIVVPRQVAHGLATAIHLRIGHPTCHQ
LKAVFSRYFFALNMDAVLHQVSDACDQCASLKRQLPIPPSFTTQPPPSTVLTSFAADVMRRARQQILVVRECSTSFTSTQ
LISGETSTSLRDGLVALCTPLRLLDGPPAVIRCDPAPGFQALINDPWLTEHRLQIEVGHHKNVNKNPIAERAIEELREEL
RKIDPLGQPITPAQLAVVTASLNTKVRSNGLSSREYLYQRDQFSGEQLPLSDNRLLEEQHRRRSENHAPSAKSKCPKAGL
APTPTFHVGDLVYVHSDRDKSQARSRYLVTAVEKDWIYISKFIGRQLRARSYKVRSAECYPVPCQVPPQQRQTVPSDDDN
NDDSDPEDPIPSVPANDPVPAEDLVPVNGPLPELNDPPNTPPPLPELHNPPDTPPPLPQRQSDRCRRQPRYLKDFVLS
>DIRS-29_NV_yr#LTR/Ngaro 1410-2198 [Nematostella vectensis]
REIAAELERDVINFRQHTFAESTKATYKTHRATFLRFCSFMGFSPVPLQQRHLLLYAAFLARSLKPTSIRSYLNIIGILH
KEFGLPNPLLNNWSLQALLTGIKRAKGSPPNQKQPITTALLHRIFATLNHRSSLDASFWAICLVAFYGMFRKSHLLPTSA
TRFDADKQLTKADITIQPWGALVTIHWSKTIQFRERVVEIPLPRIPGSEICPTSAIEHAVHFNSSSGARSQAFDWMEDRA
PRIFTYKKFVTKLRHHLALCNV
>DIRS-26_NV_yr#LTR/Ngaro 1814-2851 [Nematostella vectensis]
HFSRFFISSPASGFQRQSPSNHAFQPDGNSVVSVATTLGPIVETLMASSLQQSSIPTYRRAWRLFNQFLSATFQNCVVQL
PISPSMVALFIAYLFDHHYAPSTVHTYVSALGYSHRLSNLPDPTKVFYVIQILKGYSKIGFKLDTRLPITLPILQRLVTA
APVICSTKFESCLFQSMCCFAFYAFLRVGEMTQSSQTQNTGSLLTIFQLSQLKEETGVVKALKLTFHNFKHSYNQRPFSL
IIQRQNSPCPVNLLLQYLVLRGTHAGPLFLDSFGNAVTRDKFTNLLSLAIRHSGLNPSFYKGHSFRIGAASHAAAQGLSD
AQIRIMGRWKSNAFQKYIRVNSLVN
>DIRS-31_NV_pol#LTR/Ngaro 921-2487 via tfasty with LvNgaro1_pol, 1 frameshift. [Nematostella vectensis]
GEPPIIPRLQAPRLNHNNQGLELPTPVSADRLASLLVGYDAVKVSILFNGFQFGFALHYEGSREAVDKKLITELQAGRLA
GPFVTPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKIRAAGRGCFLTKTDIKN
AFRIIPVRPQDYNLLGMQWKGYYYHDRCMPMGCSSSCKTFELFSTALEWIALEKLRIPQVVHLLDDFLFISPSQHLGVMH
LNLFLDVCNYLGVPIAPEKTLGPSTTLSFAGIELDTILFEARLPVDKIQKCLDTISKFLTRKKVTLRELQSLNGLLNFAC
SVVVPGRAFLRRLIDLTIGINAPLHYIRLSREVKADLRVWQCFLEDFNGKSFFLEDTWHSSDNLKLYTDASGAIGFGAVF
GNKWCYGTWPDNWKHRNIAILEFYPIVLSLLLWGNHMSNRCILFLTDNEALVHVINKQSCKDKELMFFVRQLVSKHIPGV
RNSLADSLSRLQLQRFRLMAPPTVDQLPAEIPAHLQPQNLQLL
>DIRS-42_NV_pol#LTR/Ngaro 13-1464 via tfasty with LvNgaro1_pol, 2 frameshifts and 2 stopcodons. [Nematostella vectensis]
PTPVRVIRLNDLLQAYDSQRATFIREGFTYGFRVNFLGARSSFETNNLLSAEQNPEAVSAKLTKEMELNRIEGPxATPPL
PDFRVSPLGVVPKKTAGEFRLIHHLFHPKDASVNDGIATEHTSVHYVSMDDAIAMIKRVGVGCYLSKPYIKNAFRVLPIH
PEGYNLLGMKWLGYYYFDKCLPMGLASSCKTFEEVSTAIQWIAQHKRGISNIIHILDDFLIIKPTHNIxQASLSTFLELC
SFLGVAMTPEEIEGPSQVLCFAGIEIDFLNSEARLPIEKLTKCRELIDCFMGRKKVTLKELQSLIGNLNFTCSVVIPGRA
VLRRIIDLTIGLRLPSHKKKLSREVKADLLTWHSFTHFNGRSFVLNDIWLSSENLQLYTDSSGSPGFGVVFGNHWCYGSW
SMDWQNRNIAFLEFYPIVLSLFLWGQDMAKQCITFYTDNEALVHVINRCTSKDKYFMFFVRKLVLVCLQENIHDCQLHCL
YLTV
>DIRS-31_NV_yr#LTR/Ngaro 2421-3401 [Nematostella vectensis]
SHSGSAASGDSSPSAASELATVVTKLLQSSLQPSSMPIYRRAWNLFSQFIYATNIAFSATLPISPSTLALFIAYLFDKNY
APATVNTYVSALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILHKLIEAANNFSLSSFLIARFQAMCL
LAFHAFLRVGEITTSSGNKGNPPLAIYQITKMVNEQKEIVALKLTFGNFKHSYNQHPFSIEVSRRNDVCPVQHIMKYLSL
RGSGPGPIFISADGSPVPRSEFTDRLSVAIKSCGLDPSRYKGHSFRIGAASNAADAGMSDAQIRALGRWKSNAFLKYIRI
QSVSTSV
>DIRS-1_SP_yr#LTR/Ngaro 4956-5966 [Strongylocentrotus purpuratus]
CSFSFSGLPLPSACSRGRSRGNAPAPPSVEDLHQEWSDLLVSSRARNTHAVYQQAWESFRKFLLLYFPASNTPYSYEQMA
LFISYLSLQGYAASTIVTYISGISSRLQTEGLLDVTKHFVVSRLLVGCRRRHSRTDARCPITMPILKKLLSALPAVCNSY
DAILFKACFLAAFWGFLRIGEFTANSRSTSDVSLEGRDVIVDGSAPRRHVRLHIRSSKTDQQGQGCYILMPEADGCPLCP
VQAVLDYMAIRPQSSGAFFCRFDGNHVTRREFTAVLRKCLSFLDLPVARFTSHSFRIGAATSAAMAGFDSGEIQNMGRWS
SDAHKRYVRINMLPIA
>EIAV_gag#LTR/Lenti gi|62288102|sp|P69730|GAG_EIAV9 Gag polyprotein. Contains: Core protein p15; Major core protein p26 (Capsid protein p26); Core protein p11; Core protein p9. [Equine infectious anemia virus]
MGDPLTWSKALKKLEKVTVQGSQKLTTGNCNWALSLVDLFHDTNFVKEKDWQLRDVIPLLEDVTQTLSGQEREAFERTWW
AISAVKMGLQINNVVDGKASFQLLRAKYEKKTANKKQSEPSEEYPIMIDGAGNRNFRPLTPRGYTTWVNTIQTNGLLNEA
SQNLFGILSVDCTSEEMNAFLDVVPGQAGQKQILLDAIDKIADDWDNRHPLPNAPLVAPPQGPIPMTARFIRGLGVPRER
QMEPAFDQFRQTYRQWIIEAMSEGIKVMIGKPKAQNIRQGAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTLTIQNANE
ECRNAMRHLRPEDTLEEKMYACRDIGTTKQKMMLLAKALQTGLAGPFKGGALKGGPLKAAQTCYNCGKPGHLSSQCRAPK
VCFKCKQPGHFSKQCRSVPKNGKQGAQGRPQKQTFPIQQKSQHNKSVVQETPQTQNLYPDLSEIKKEYNVKEKDQVEDLN
LDSLWE
>Env-1_SK_env#LTR/Gypsy? 114-1700 [Saccoglossus kowalevskii]
MNFPVPTPENIRTNNSTLDKSFTKVVNLPEYLGISSHDYTYIEISANDLMHCSGDKVKSCDHPFTIFQSDSSSCAHAIYL
DKQDRVSKFCSVQILVNYNPRPSAFYLPNSKALIQGLTADTYVVCPGRETRSLPPCELCLVDMGCNCKLTSKEISLHTSL
SQCTGNDTFLVHYVANLHFTRAIFQSYSLTNVTGSQTFVSKWKAELPDLSILQHAFNQSLATDAALTLDLAKVANSHNKR
SIMYASNLDQLAFQCRPNFDLFSTPYSYLAQLFSPTMILAIISLTLYLLMFIKIRRQGGLIRQLLIATSTSNIIHTTKGA
PILYLHSSTSEPISDPNICNYPSSLSFSFMHVAILLTTMVVFYLSKAMVLKLKRLLFSSSSITQGSKAKIILELSNPMEA
ISFFVRDVSYPVSSITRTARQPIRSAWITQGFLTSKLNLKWRNLQFLLEDSRVEEISLPPQISIPFGKSSSTIRILQTRY
HIRILVGDAPVFTEIPIINTKNREIENSYEHLKAIPPIPTNIVTNPADQ
>FIV-C_pol#LTR/Lenti gi|4377544|emb|CAA40318.1| POL [Feline immunodeficiency virus]
KEFGKLEGGASCSPSESSAASSNAICTSNGGETIGFVNYNKVGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRD
FQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVMAQISDK
IPVVKVKMKDPNKGPQIKQWPLTNEKIEALTEIVERLEREGKVKRADPNNPWNTPVFAIKKKSGKWRMLIDFRELNKLTE
KGAEVQLGLPHPAGLQIKKQVTVLDIGDAYFTIPLDPDYSPYTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQSTLD
NIIQPFIRQNPQLDIYQYMDDIYIGSNLSKKEHKEKVEELRKLLLWWGFETPEDKLQEEPPYTWMGYELHPLTWTIQQKQ
LDIPEQPTLNELQKLAGKINWASQAIPDLSIKALTNMMRGNQNLNSTRQWTKEARLEVQKAKKAIEEQVQLGYYDPSKEL
YAKLSLVGPHQISYQVYQKDPEKILWYGKMSRQKKKAENTCDIALRACYKIREESIIRIGKEPRYEIPTSREAWESNLIN
SPYLKAPPPEVEYIHAALNIKRALSMIKDAPIPGAETWYIDGGRKLGKAAKAAYWTDTGKWKVMELEGSNQKAEIQALLL
ALKAGSEEMNIITDSQYVINIILQQPDMMEGIWQEVLEELEKKTAIFIDWVPGHKGIPGNEEVDKLCQTMMIIEGDGILD
KRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGHWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGVIMINVSRKSI
TLMERQKIAQLIILPCKHEVLEQGKVVMDSERGDNGYGSTGVFSSWVDRIEEAELNHEKFHSDPQYLRTEFNLPKMVAEE
IRRKCPVCRIRGEQVGGQLKIGPGIWQMDCTYFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQT
DNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAVHSLNFKRRGRIGGMA
PYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKDKKWKGPMRVEYWGQGSVLLKDEEKGYFLIPRRHIRRVPEPCALP
EGDE
>CcNgaro1_pol#LTR/Ngaro gi|46194166|tpg|DAA01993.1| TPA: reverse transcriptase/ribonuclease H [Coprinopsis cinerea]
ATGEGDLPLGRGQDLEASLPTGARARKGVQGHLAGPQTEPRAIAESPTSLFSDVHRRERPCPRAQSAWGATHTTPTRVNP
RRCTMERRHIVEKEKMGASSPSTGGSHYVPTGNPVEAVRARLTIRNTGVQDAETRLTALKAVLRAKQHDPGSPYRADRWE
QRLREAGLLPEFADIPKGLREGFHAGIPHIKITFTPPNKPSITEFAEHFRGILQAEYDAGRYVGPLSKREVEALLGPFQT
SPLSIIPKAGKPGKFRLIQNLSYPHSALPGPITSINSHINSNNYPCTWGTFDTVYLIIARLPPGSQAAVRDIKEAYRTIP
LHPSQWPGIVVRIDDNSFAIDLRDCFGLASGGGVYGRVGDAGAQLTRAHGIGPLSKWVDDIVFFRLLASEVEGYNQKRKK
WAKEIRDNGGKRQDGGRIWFAGSIRPDGHPEEFDEDQTQPLRVLPSPSKLREDAQYAYNMSDLDSLFNDLGIPIAKEKDI
PFGFIVAYIGFLWNVKDKWVALTPAKREKYLSAIAEWESATTHDLLDAQQLYGKLLHTCHIIPEGRAYLTNLEAFMAIFR
DKPHRQLTPPRHTPEDLRWWKDQLLNTERRREIKEHPPIIDINGFSDASSEIGIGIVIGTKWRAWKLLPGWKAEGRDIGW
AEAVGFLFLATAAAGLGAEKGSHIQLYGDNRGVVEGWWKGRSRNWQTNLIFRQVHALSKSSSIAFHTHYVKSASNPADLP
SRGIYGSPEDLLPHIPIPNYLRKFVADFDSQQPPNPSPIKASAKAKAELPRGSFQSSQAEEARTLAEFRQHI
>SHIV_nef#LTR/Lenti gi|9629924|ref|NP_046131.1| nef protein [Simian-Human immunodeficiency virus]
MGGAISMRRSRPSGDLRQRLLRARGETYGRLLGEVEDGYSQSPGGLDKGLSSLSCEGQKYNQGQYMNTPWRNPAEEREKL
AYRKQNMDDIDEEDDDLVGVSVRPKVPLRTMSYKLAIDMSHFIKEKGGLEGIYYSARRHRILDIYLEKEEGIIPDWQDYT
SGPGIRYPKTFGWLWKLVPVNVSDEAQEDEEHYLMHPAQTSQWDDPWGEVLAWKFDPTLAYTYEAYVRYPEEFGSKSGLS
EEEVRRRLTARGLLNMADKKETR
>QUASIMODO_pol#LTR/Gypsy 1344-4613 [Drosophila fruit fly genus]
KFSSTCLGIGIRSRRRTYPFIQITMNDIKLKCLIDTGSSINLMSKNFFNCPINSKAPLDVHTINGQIILKSKITLKPSKL
CPTKQTFYLHKFSEKYDILLGREYLEDSKATICYTSNTVTLNKYTFKLRLEDINEEEETPKESLKENLLDSPNIEYVNYV
IDNELNETNEFRLDHLNDEERKALTSVLYEFSDIQYKEGENLTFTSTTKHVITTKHEDPIYRRPYKYPQSFDEEVENQMK
DMIRQGIIRKSNSPYCSPVWVVPKKPDASGKSKFRIVIDYRNLNEITVDDKYPIPVMDEILDKLGNCQYFTTIDLAKGFH
QIQMDENSIAKTAFSTKNGHFEYTRMPFGLKNAPATFQRCMNNLLADLIYKNCLVYMDDIIVYSTSLEEHIMSLRKVFLK
LREANLKLQLDKCEFLKKETEFLGHIITTDGIKPNPAKIKAVVNFPIPKSTKEIKSFLGLCGFYRKFIPNFAKIAKPMTL
RLKKGSIINIKDSDYYLAFEKLKVLITSDPILIHPDFKKSFSLTTDASNFAIGAVLSQEHKPICYASRTLNEHEVNYSAI
EKELLAIVWATKYFRSYLFGRKFEIHSDHRPLVWLDSIKEPNMKLQRWKIKLNEFDYHIKYLPGKENHVADALSRVKIEE
NFLGETSSNISLPTQATIHSAQEDNQSYISLTERPINYYNRQIEFIKDDNNNVETKRYFHKTKIKIHYIEMTNVHAKELI
KEYLCTKRSVIFFHNEIDFLTFQNAYIEIVSPNNITKVMKSNIKLKDIETYSEFKEIIIKSHRELLHPGIEKQTNLFKEK
YYYPDYQKLIQNIINECEVCNISKTEHRDTKLRYELTPETFNPREKYVIDFYLINNKTFLSCIDIYSKYAALIEVSSRDW
LEAKRALLKIFNEMGKPSEIKADKDSAFICSALHLWLRSENVNINITTSKNGISDIERFHKTVNEKLRIINSESDPENKI
TQFETILYVYNHKTKHNTTGRTPADIFLYAGTPAYDTQKEKQSKIDKLNKDRHSYEVDTRYKQAPLVKSKTTNPFKKTGH
VEQIDEKHYEETNRGRKVEHYKSKFKKQKRINKSKYNSSSTPENQVGSD
>QUASIMODO2_DM_pol#LTR/Gypsy 2025-5144 [Drosophila melanogaster]
EFSAPSLGTSQFIIIKHKGLNLKCLIDTGSTVNMATQNFFKLPIQEIAKKINSSNGQFIAQKKVTLPKNNLFPKPYDFFI
YPFSTKYDLILGRQLLDEGTTSVNYGPRTVTIYGHVHEMIDAFLPSEEIHIQDTQNNSFRLDHLNSEEKAKLITLLKEFQ
DLQYKKGDQLTFTNNVKHTIRTSHNDPVYRKPYGYAPGLDTEVENQIKEMLDQGIIRESNSPYCSPIVVVPKKPDISGQK
KYRIAIDYRYLNEITIADKYPIPNMDEILSKLGGCNYFTTIDLIKGFHQIEMDPESIPKTAFTTKTGHYEYTRMPFGLKN
APATFQRCMNDVLRPLLNKICMVYLDDIIVFSASLEEHLQSLRAVFQALSNANLKLQLDKCEFLKHDTYFLGHMVSPEGI
RPNPEKLRAIENYPLPTKPKEIKSFLGLTGFYRKFIPHFAQIAKPLTTCLKKDKKVDIKNPEYIEAFKRLKLLISNDPIL
RSPDFKKKFVLTTDASNVALGAVLSQDGHPISYISRTLNDHETNYSTIEKELLAIVWATKTFRHYLLGRHFEIASDHQPL
CWLHKMKEPNAKLTRWKFRLAEYDFDIKYVKGKENHVADALSRITIEEAFFTEATQHSAQEDNQNLISLTEKAVNNYNRQ
VIFTKGPEKVKQENYYKKKIIHISYETLTHKKAKQYLIDYFVNNHSALYIDSDADFETIQAAHKEIINPSTTKVIRSLTL
LKNIKSYAEFKELILQSHEKLLHPGIQKTKKLFSENYFFPNSQLQIQNIINECQVCNLAKSEHRNTKVPFKLTPSIEFCR
DKFVIDIYSVEGKHYLSCIDTYSKFATLEQIKTKDWIECKNALMRIFNQLGKPKLLKADRDGAFSSLALKEWLETEGVEL
QLNTTKTGVADIERFHKTINEKIRIINTMKNTETDLSKIETILYTYNHKTKHDTTGQTPAHIFLYAGQPTLNTQELKRTK
IDKLNKGREDHDIDTRYRKGPLQKGKLDNPYKPTKNVEQTDADHYKITNRNRAMHYYKTQFKKRKKINQTHTPTQMATS
>RAM4_gag#LTR/Gypsy 96-3798 via tfasty with Atlantys_LC_gag, 2 frameshifts and 1 stopcodon. [Medicago truncatula]
MRLRNKKILPEMTRPPVVSGTTAANIASTSGTATNQSIPAGSTLLGRNNPTGHVLEPVEAVLEENVTSQTSQANTSNTMA
NNSSRNIPVATTAAHTTQSAGNMFSQSVLNLGNNGRGSYGIPTSSTQTSHTTTITPPFSNQGENIAFGRSPQGFVPFGSP
QQSLTNASTNALRQTMAETNHDMVNMVTQQVATVISPLIKDTNSSYQALSQHMGRIADFLGAPQARATPATRNSNANARP
REASVEEQTNQVLENQAQNEQPEIPEEPVRIPVVVNRNQNADQVVMQARRNNYGGHNNIADIVETLMAxNGFNTGIHRPN
FVSALADFVLETEMPRNHKIPKFTKFAGETNESTVEHIARYIMEAGDLANNENLKLKYFPSSLTKNAFTWFTTLPPHSIV
TWNQLEKAFHEQFYMGQSKISLKELASVRRKTHESIDDYLNRFRLLKARCFTAVPEHKLVEMAAGGLDYSVRKKLDTQYL
RDMAQLADRVRQVERLKAEKARTNRFPKKEKVGYIETGDSEPEFDWGFDSVEDSEINLAELKEGPPYTCKLLRPSNGKNV
EEPKNYKYPSKTYTFDVSKSEEIFDLLVADGIILVPDNMKIPPLDQRKKRGFCKFHGFLGHNLSRCTRFRDSVQKALDEG
RLKQQVKPDVDSSKKAESMYAEVVGINMVDVATPNDGRLSSREAVPDDIKMVTEGHVQNTSLVTEDQFQKNVEKAYPKAE
EDLIDFLNCCKISNTNAMLCPRSSAVFDKEAAKAIEGTQPQAKWKGKKKDNRPRYNFNKRGAPYKDHATGNTQKRNWGKT
FNPPANSPTNTWVFSGGRKSGYSAPPTKWVKRKVPAPRVEAPRSPTRYPYNNNYRRQQPMTRTQWRRYQRQKKPQPHKIP
RNIDKMEDKQKAVFEMVKKPATERISPPLSILMKDHPKEDEEMTSNFTESDPSLDIVCNVVSILPVEYDVQSEINEAESD
FVDEMATHKPLCYYVMNNDCVEEQHAVFEKPDISMKSHLKPLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGRIGLYDS
DLKPHNVILTNYEGTSGNSLGAIELELMVGSTKRIPTFMVVPLKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE
NVEADQSYFLAEVNTITKNNFDKQLAHIAPVVSPGLKQIASNNEMYSMKLQPEAGFVWEKDFRDHDFVMVNQQEAQLDDE
GLLVTRAQAYKKATDGLVPKASEYVTPPLGGSAGN
>RETROSAT5_gagpol#LTR/Gypsy 1471-5880 [Oryza sativa]
MASRRRATTSNDETQTPDLNTLAGIMATQTQLLQAIASNQGNRGGSSFGEFMRTKPPTFATADEPMEAEDWLRIIEKKLT
LVRVREADKVIFAVNQLEGPAGDWWDTYKEAREDGAGEPTWEEFTVAFRENFVPAAVMRMKKNEFRRLRQGNTTVQEYLN
KFTQLARYAIGDLADEEEKIDKFIEGLNDELRGPMIGQDHESFQSLINKVVRLENDQRTVEHNRKRRLAMSRLPQTVPQR
LKGATPSGWKPPVMVTNRPAALSNFNRPVALQNRTPTPTLAAPGAKKNVDCFNCGEYGHYANNCPHPRKTPIRTGANAMT
VRGTTTPAVGRGLFKTPQSNRTTTGFGRGQVNHVRAEEAQEDQGVLMGMFSINSTPVKVLFDSGASHSFISLKASQKHNL
TLVGLRKPMIVHSPGGEITVSHACIDVPIRLRDVVFPSNLMVLIPQTLDVILGMDWLAKHRGVIDCRRREVTLTTPWGSD
MRATMDQDPRLTERAGGIFTMLPLKGMPVVQRFPDVFPEDLPGMPPDRDVEFIIDLIPGTAPISKRPYRMPVNELEELKK
QIRELQQKGFVRPSSSPWGAPVLFDKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQL
KIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLR
KHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIRSFLGLAGYYRRFIEGFSKIARPMTQLL
KKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVLMQDEKVVAYASRQLRPHEENYPTHDLE
LVAVVHALKIWRHYLIGNHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDLEVHYHPGKANVVADALSRKSHCNHLR
MEGMVPELREEIAQLNLHIVPRGQINTLDIQPLLRTQIEEAQKDNEEVREVKERLAAGRAKEFSTDEKDVLWYKKRIYVP
EQGGLRGLILKEAHESAYSLHPRSTKMYQDLKEGYWWPNMKRDVAEYVALCDVCQKVKAEHQRPAGLLQPLRIPEWKWDE
IGMDFIVGLPKTATGYDSIWVIVDRLTKTARFIPVKTNYSSAKLAELYMTRIVCLHGVPKKIISDRGTQFTSHFWEKVHE
ALGSYLAFSTAYHPQTDGQTERTNQVLEDMLRACALDFSKDWERCLPYAEFSYNNSFQASLKMSPNEALFGRRCRTPLMW
SETGERAVFGPDIIQEAEEKVRLIRDRLKVAQSRQKSYADTRRRNLEFKEGDYVYLKVSPMRGTKRFKVKGKLAPRYVGP
FQITARRGEVAYQLQLPENIAEVHPVFHVSQLKKCLRVPEEQAPLEEIHISNDLTYPEHPIRILDEAEKRTRSKVWRMYK
VQWSNHTEAEATWESEEFLRTEYPHLFENW
>RETRO1_pol#LTR/Gypsy 2428-6156 [Oryza sativa]
EDALVSFLRANADVFAWRPADMPGVPREVIEHCLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWL
ANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFITPVGTY
CYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDLVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGK
LLGFLVSARGIEANPEKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAEHALTQL
KAYLSSPPVLVAPEPNESLLLYLAATPQVVSAALVVERDEDNSHSAHPHSVPIWPGSRQGGEAPESNGGLRPPTTGVGPP
PACQTVPGAPDPQEGPEATAGRPHLAPFDPEANPVLSRPGKEQGEEAPEPNGGQRPLTTGVGPLPACPTMPGAPDPQDGP
EATVGRLLLSSSDPEVIGTEDECAPRGHLDEERPGGSAPSKEDRPRRRVQRPVYFVSEALRDAKTRYPQAQKMLYAILMA
SRKLRHYFQAHRVTVVTSYPLGQILHNREGTGRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWTPAPETVSMPEAST
NPSQLPHAAHWVMQFDGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQ
LVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMIADELSRLASSRAQTPPGAFEERLTQPSARPDPLG
ETDAPDRPPRPVGVQASGPEGSAPSSLRLIAWISEIQTYLTDKTLPEDREGSERVQRISKRYVLVEGTLYRRAANGILLK
CIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIHQPAQALQIIPLSWPFA
VWGLDILGPFKRAPGGFEYLYVAIDKFTKWPEAYPVVKIDKHSALKFIKGITARFGVPNRIITDNGTQFTSELFGDYFED
MGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLP
SELTLRSPRATMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLS
PMWEGPYRVVGVPRPGSVRLATGDGTELPNPWNIEHLRRFYP
>PYGGY_pol#LTR/Gypsy 1840-3240 via tfasty with Gypsy1_MG_pol, 6 frameshifts and 7 stopcodons [Pyrenophora graminea]
MDQKTRSEWNQFQQEHMRTLPITIDLIVNDVTNAVALVDCRCLCYALVNKKFAYCYYLERFQIPARLIEGVNSKLSEIYK
VARFSLRMHRHEEIAYAYVMDLSSEEDIYLGRGWIDHQDVTVAPAKKSIFIHSKGIRVRSTEGGSAGKPRQINAAGFAAL
IRRQKRAPNSVQIFAASIADIDKALRPKKKVDVRALLPEQYKEFYDLVDPKRAEKLPPHRGPRVDHKIELDLKDSQPLWG
PLYGMLRGELLVLQKELTSLLNKGFIRVSSSPVSLLVLFAKKLGGGLRLYIDYRALNAITREKNRYLLPLIRETLNNISK
AKWFTKLDVIAAFYKICVVEGNKWKTAFRTRFSLYKWLVTPFSIVNSLSTFQRYINWTLREYLDEFCSAYLDDVLIYTDG
SLEQHQDHVRKVLRKLQESGLNVDIKKCEFGVKSTKYLGLIIDAEKGIRIDLEKVKAIIEWEPPKTVKGVRLFLGFANFY
RRFIQSFSGITAPLTRLTGDVSFNWGEEEQAVFEKLKRIFVTEPILATFYSERDTILECDSSRYATGGVLSQYNDEGVLR
PCAYFSKKNNVYECNYKIHNKELLAIICCLKEWDAELRLVKSFKVITDHKNLEYFIKQRCxQTLNLLGRLLSRFNIEILY
RPGKQNVRADALSRREQELAKDAEDERLRKRVIQVLKPTRTGMMKLARTIRTQKRLDFIGEDSRMTNRRPSKPDxRAVRT
SRQTGDSPSPTEGQSEQQEDLAQGNELEELWLEALKNDRQYQEATQAVIRAERRFPPSLAxKCSISECEVSNQGGLLYRG
RRWVPDNESLRTKIISGVHESLSSGHTRGERLPYKDNLPRRFFWAGMIGRIRRYVRNCDVCGRTKPxREGRQGLLKPLLI
LDRIWKEISIDFIKGLLTSEGITCLIVVTNRLSKGSIFILLPNIKIETVVRAFLRQVVAYHWLPEAITSDRGSQFVSVLx
ERLCEILKIRRQLSTSFYPQTNSSTERINSVWEAYTRAFISWAQTDWASLCPIAQIAINSRDATSTGVAPFFLQHRYNID
PLQLEIPQGADQKKYTAEEYSDRKKAEAIVAKFRDVFNLAQASMATAKQNKKGQANRHRKEAKRYQVSDKVWLRLDKQYR
TGRQSQKLDxKSAKYTVVxVIDSHLVKLDTPPGHHPVFHVDRLRLANSDPLTSQVQDNYQPLLLQIGDKNKWVVEEIMSE
KWKRRERGWRLYYEVKWARYTLTDLQPGELLEEIEALESIEGYTKDVRSEEGRLPEGFRRDNP
>Ogre-MT4_orf1#LTR/Gypsy 701-2110  [Medicago truncatula]
MRNLRQYSFRRPDLLSLRKLGKKVVCMDDFYKQHGNLMGVVKTDIDEGLLNAFVQFYDPGYHCFTFQDYQILPTLEEYSC
WINLPVLDKVPFSGLEEIPKHSTIAAALHLETDEVKAHLITKGKLLGFSTDFLYERTTFFDKMGVAYAFNSILALLIYGL
VLFPSLDNFVDIKAIQIFLSRNPVPTLLGDTYLSIHRRTQAGRGTILCCAQLLYRWITSHLPRTPRFTTNPENLLWSKRL
MSLTPTEVVWYDRVYDKGTIIDSCGKFANVPLLGIEGGISYNPTLARRQFGYPMEGKPLSIYLENVYYLNVDDSKGTKEQ
VVRAWHTIRRRDKSQLGRKTGAVHESYTQWVIDRAVQIGMPYKISRFVSAITPAPPLPMTFDTEKEYQERLVEAEREVQK
WKGEYQKKDQEYEAVMALLEQEAYDSHKKDVIIAQLKKSIREKDAALDQIPGRKKKRMDLFDGPHSDFEE
>Ogre-LE1_orf1#LTR/Gypsy 782-2086 [Solanum lycopersicum]
MTHPHFPNTQMVVKVNPILKTWWKDIQKNRELEANELLGGLTALISVESDRHLIKALLKFWDTERLVFKFRDFELTPTIK
EVGGFMGLAYKELEIIVPHKPSPRSFLKQMGMCHNPNLLCLKEGWISLEFLYSRFGDEEGHQNFHREFACSSAKWERYRL
NAFAVVLLGSLVFPREGGKIHTGLCYVVRMLARGGKTLVPMILAEILRALTACTKGKRYFEGCNFLLQLWAVEHFYQRAN
KVDIVRWTMGNKIINHPLRMKHFISPVGTEDWFTYLKERSAVEIQWKYYWLKPRRAIIRGNELYFIELIGLNGVQPYAPL
RVLRQFGQIQMIPLRSHMSHYGYDFGSELPQVNTILRRWKNVITIDVQEHRPFCTPEYYVWLLEDAEHRDLSEGGLPGFG
DEKERRWARNLLNTDYDITLEMKKQIVPNIGEQHD
>OGRE_PS_pol#LTR/Gypsy 6510-9977  [Pisum sativum]
MAFTMNGSVIAQYDFDNPIYQAEEESEEDCELPAELVRLLKQEERVIQPHQEELEVVNLGTEDATREIKIGAALEDSVKR
RLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMATKIKEEVQKQWDAGFLAVTSYPPWMAN
IVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVLVDNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFCY
KVMPFGLKNAGATYQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFGVRSGKLL
GFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCEPIFKLLRKNQAIKWNDDCQKAFDKIKE
YLQKPPILIPPVPGRPLIMYLSVTENSMGCVLGRHDESGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYM
LNHTTLLISKMDPVKYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPDEDIMYLK
MKDCKEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHMPFSARLTFDVTNNEAEYEACIMGIEEAIDLRIKT
LDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVKLYHVPRDENQMADALATLSSMIKVNWWNHVPHVAVNR
LERPAYVFAAESVVIDEKPWYYDIKNFLKTQEYPEGASKNDKKTLRRLAGSFYLNQDDVLYKRNFDMVLLRCMDRPEADM
LMQEVHEGSFGTHAGGHAMAKKLLRAGYYWMTMESDCFKYARKCHKCQIYADRVHVPPSPLNVMNSPWPFAMWGIDMIGK
IEPTASNGHRFILVAIDYFTKWVEAASYANITKQVVTRFIKKEIICRYGVPERIITDNGSNLNNKMMKELCKDFKIEHHN
SSPYRPKMNGAVEAANKNIKKIVRKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPYSLVYGMEAVLPVEVEIPSLRVLL
DVKLDEAEWIRTRFNELSLIEERRLAVVCHGQLYQRRMKRAFDQKVRPRSYQIGDLVLKRILPPGTDNRGKWTPNYEGPY
VVKKVFSGGALMLTTMDGEDFPSPVNSDVVKKYFA
>PSAT19#LTR/Gypsy 3-659 [Pisum sativum]
EAEEDDVEGIPNKITRLLEHEEKIIQPHLENLETVNLGSEDCVRIVKIGALLEESVKKGLISLLREYSDIFAWSYEDMPG
LDTDIVQHFLPLKPECVPVKQKLRRTHPDMAVKIKEEVQKQIDAGFLVTSTYPQWVANIVPVPKKDGKVRMCVDYRDLNK
ASPKDDFPLPHTDMLVDNTAKFKVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFCY
>Pifo_pol#LTR/Gypsy 3160-6534 [Drosophila yakuba]
KFSTGSLRNPSGYISPATHESSLPFIEINLPFSPHLKFLIDTGSTHSFIDPKHIESKDCVGLEKPLTLKTALNTFVLQKK
FVIPFPSEFKTQGKMNLLPFRFHSFFDGLLGMDSLSFLKAKIDILNSQLKTSNTILPIINYTNQTSNVFCITAHTKTTIP
LPVQNDQGDFLYDTTYINKDLIISGGLYKSNNHLTTFEVANYRDSDQLLYLESPLKGIPYVKADFVELNNISSDPPKLPD
LVNPLDNLKMEHLNPEEKQNLITLCKEFSDIFFNETVKLSFTNKITHSIPTTDNTPIHVRSYRYPYIHKEEVKKQINSML
NQDIIRSSYSPWSAPVWVVPKKAGPNGEQKWRLVIDYRKLNDKTISDRYPIPNINDILDRIGKAKYFTTLDLASGFHQIE
MNPDDIAKTAFTVEGGHYEFIRMPFGLKNAPATFQRVMDSILGDVIGLNCLVYLDDIIVFSASLQEHVIHLTSIFQKLRD
ANFKVQLNKSDFLRKETEFLGHIVTQEGIKPNPDKIAAIKNFPCPKNKKEIKSFLGLLGYYRKFIKDFAKITKPLTKQLK
GNNKTITIDDEFTKTVDFCKILLTNDPILQYPDFTKPFILTTDASNFALGAVLSQGTLQNDKPVCFASRTLSDTEVNYST
IEKEMLAIIWAVQYYRPYLFGTKFTIVTDHKPLTWLMNFKQPNSKVIRWRLQLLEYDFEVVYKNGSQNVIADALSRSNAN
LNHNEIVPNSPYECPVSDKPLNDFNIQLVIKLSQDTGYNTSTPSKHKLRREYYRPLLIRCLSFLPELTDDSEITRTIVDY
HTKNNHRGIDETFLHLKRKIFFPYMKDKITKIIRTCETCLKLKYDRHPQKIPFQITETPLKPLDIVHIDIYTINNNYNLT
IIDKFSKFAAAYPIPNRNCINVVKSLKHFISQFGIPKKLVYDQGAEFSSDMFSNFCSQYNIVLHVTSFQQSSSNSPVERL
HSTFTEIYRIIIDTRKQLKLNTEHDETMSETLITYNSAIHSATEHTPFELFTGRTHTFENNTKFSNEHDYLVKLNEFKQK
IYPLIADKLSEKALQRTLKINETRTPPATLEPETLVLRKENRRNKITPRFSLHKVLHDQGPTLVTTRNQKLHKSKIRRII
LKKK
>RETROSAT6_gagpol#LTR/Gypsy 1922-6439 [Oryza sativa]
MTHTHSMAALTDDANGEGASQPRTGPYSSGRAGGSRRAATAEQHDDEPSLAQLLANQNRLFERMVANSENMGAAMAQQAN
QAPSKLADVQRTHPPHFSSAADPLAADDWLRDIEIKLNLCRCDPVEKATFAAYYLQGAAAAWWETYKTLIPPDEPITWTV
FREGFRSAHIPAGLMEIKKKEFLNLKQGNMPFMEFMERFNYLGRYAASDLNTETKKVELCRDRLAPELKHALAAHEITSM
KTLVDKALRVESSEKEVVEDRKRKWAAKKFAGSSSSTRPRLAPSPAVRPMAPQPPRQMYVPPRPQTQLVRQVPRAVQAAG
DASRNANVTCYNCGKKGHYSPSCPYPKTGKSGPYSQGAPQQPRGPPQVQPGQRGAPAVPKPAPTFGRGRLNHVTAEEATD
APGVVLGTFLVHSIPLTVLFDSGATHSFMSTLKAKQLDLKTEFLSDAMRIQSPGSTMVTKLLCKGVELIIDGVKFKANLI
LLDTLGLNVILGMDWLTKHEGTIDCAHRTVTLRSTDGQFVRFTFEQTSTSNQPSIQSLSIPELKSVPIVNEYSDVFPDEL
PGMPPDRDIEFVIDLIPGTAPIAKRPYRMTSENLMELKKQLNEQLAKGFIRPSSSPWGCPVLFVPKKDGTMRMCVDYRPL
NEVTIKNKYPLPRIDDLFDQLTGTRVFSKIDLRLGYFQLKIRPEDIPKTAFTTRYGLFEYTVVSFGLTIAPASFMNMMNK
IFMEYLDKFVVVFIDDILIYSKSEEEHAQHLRMVLDKLREHQLYAKFSKCEFWLKEVEFLGHVLSEGGIAVNPRNVQNVL
NWKQPQNVPEIRSFLGLAGYYRRFIENFSKIARPLTQLLKKENKFIWSEACETSFHELKRRLTTAPVLVMPDVLKPFNVY
CDASHHGLGCVLMQEGKVVAYASRQLRPHEINYPTHDLELAAVVHALKIWRHYLVSNRCEIFTDHKSLKYFFTQPDLNLR
QRRWLELIKDYDLGIHYHPGKANVVADALSRKLHHLAVIETINQPSLSSEFQKLNLGLVEDGYVAALALQPTLYSQIKAA
QSIDEEVAEIMKEINSKPQSIYTLNSDGMVMLGKRIFVPNNQHLRETILDEAHQTPLSIHPGCTKMYQDIRTQYWWPSLR
RDIAAYVAICDVCQRVKAEHQRPAGLLQPLQVPEWKFDEVGMDFITGLPKTPNGHDSIWVIMDRLTKVAHFIPVHVTYGG
AKLAELYLTHIVRLHGVPKVIVSDRGTQFTSRFWKNLHELLGTKLFLSTAFHPQTGGQVERTNQILEDMLRACVLEHNTN
WEKCLSFAEFSYNNSFQSSIQMSPFEALYGRNCRTPLYWSEVGERQFFGPAIINEAEKNVTLIRDRLKEAQTRQKSYSDR
RRRELSFDVGDHVYLKVSPMRGTQRFQIHGKLAPRYIGPYQIISKRGQVAYQLELPFQLSNIHDVFHVSQLKKCLRTPIE
HTSLEDINLKPNLSYQEYPIRILEESERRTRKSSIKMLRVQWSNHTVDEATWEREDRLKAEFPSFF
>Stalker4_pol#LTR/Gypsy 2553-6230 [Drosophila melanogaster]
QCENRAKYVGKLTEPFRKQPINVKVHSINYSLNIFVTFYNHSTENKLTFLIDTGADISLLKVNSDNFVIQNEKIINIEGI
GQGVIKSQGTTLIELQSXKYIIPHEFHLVNPNFAIPCDGIIGIDFIKKFNCQLDFKPSEDWFIIRPQNLNYPIYVPITYS
AGNNTVLLPARSQVIRKIDINVVNDFIFVPNQEIHNGIYVANTIAASKHVYVRLLNTTNFDQVVKVNKIQYENLKDYDIH
NTDTGNRSEQILSKLKKNFPDQFKNQLTELCTQYSDVFGLETEPISTNNFYKQTLRLKDDEPIYIKNYRSPHSHIEEIQK
QVGKLISDKIVEPSVSEYNSPLLLVPKKSLPNSQEKKWRLVIDYRQINKKLLSDKFPLPRIDDILDQLGRAKYFSCLDLM
SGFHQIELEENSRNITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTISFSGLEPSQAFLYMDDLMVIGCSEKHMIKNLTD
VFNVCRKYNLKLHPEKCSFFMHEVTFLGHKCTDKGVLPDDKKYDVIKNYPVPHDADSARRFVAFCNYYRRFIRNFADYSR
HITRLCKKNVPFEWSSECQNAFEYLKENLMHPTLLQYPDFRKEFCIITDASKQACGAVLTQNRNGIQLPIAYASRSFTKG
ESNKSTTEQELAAIHWAITHFRPYIYGKHFTIKTDHRPLTYLFSMTNPSSKLTRMRLELEEYDFTVEYLRGKDNFVADAL
SRINIKELKDMQHKVLKVTTRQQSRQENCTVTNKELLPRQSIQNVSKPNVHEVITNDEVRKVVTLRITESICLLKRGNKV
IARIDVDDLYTNGIFDLGQFFQRLEMQAGILKISQLKLAPSEKIFETISIDNFKNMGNIKLKTLRVALLQPVTIIKTEKE
IQSILSTYHDDPIQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTKTPLTYTETPTNAFDIVIVDT
VGPLPKSEYGNEYIVTLICDLTKYLVTIPVANKSANTVAKAIFENFILKYGPMKTFISDMGTEYKNNVIQDMCKYMKIEN
LTSTAYHHQTLGTIERSHRTFNEYIRSYISADKTDWDVWIQYFTYCFNTTPSVMHNYCPYELVFGRLPRQFANFNKTDRI
EPLYNIEDYSKEIKFRLEIAYKRARLLLEKAKSYRKQLYDKKTSDFQLKIGDKVILRNESGHKLDPVYIGPYTVETIEDR
DNIVIRDTKQKKQKVHKDRLKIYNQ
>Saci-3_gag#LTR/Gypsy 283-1149 [Schistosoma mansoni]
MVDNDKNNINMIDSEIQVISFRPVPFIPHDPEVWFAALESQFEIRRITNQRQKYAYALESLPGDHLTAVREVVLNPNVPN
VYDRLKDAILRHFLPSREERLRTLLARHPMGDAKPSHHLTRLQSLAGNMTADSEIVKELWFEALPVSIQPTLTALLEDTP
LNKVALIADKILARVNTKGDHLVASFSRSNVDLDARRPPAHGDRDRCIHTRLSFRDRANVPAPYVPRPRSQSRKAVTTRP
KRASSKPRQKAVSEASPGWCWFHRAFGAGARHCRAPCSYKAGNFSAGE
>SZ-7_p2#LTR/Gypsy #ReverseORF 9146-9820 R) [Oryza sativa]
MEREVGGTDPQPLLGRMVVIEDYVLCGFLPPPSEFLLLVLNFYGLSLLHLNPNSIAFLSIFVHLCEAYIGVEPFLDLFRF
YYELRWMESNRVSGCVGFRLRDGMKSRYIPFQCPSSRSKWRNRWFYLEIKDSNPVFVVPEDQPDKIPAWTAKPPLSPSLQ
SFIDIIDDLREQGLSGYEVAADFVGRRIQPLQARAHPAYNYFGSDDATRVSPRGIFLVFILACL
>SZ-52#LTR/Gypsy 1297-6100 via tfasty with RETROSOR1_SB, 4 frameshifts and 13 stopcodons.  [Oryza sativa]
GVALSWYTTIPPMTIYSWEHMRDTFRAGFIGAYEEPKEADDLYAMKQLPGETLRSFIVKFSRVRCQIRHVDDEMLIAAAK
RALLPGPLRFDLARNRPKTAKDLFERMESFARGEEDELRVQEEEASCWEKSSQRTSKFPKGKNKRERIPESPGKSSSMTI
NKIRKNRxILSEMDPTMKEKKENINGTTARRGRNNWGQSGKGRGQWCEFRQRxRTMVEQxKRKRKRKxTxPNQILSNTWT
RRSFHRRMLQxVLSYTWSGRAIPQKNAGKxLTCWKNTxIDMRTSMKELVINEDKTPxKHRKLxRxRQLKKVPKRVINAIT
GGSSLESxVKRQRKAYVRQVNRVGTSYQSNPPVYSKTVISFGPEDAEGIFFPHQDPLVVSVEIAQCEVQRVLIDGGSSAD
VLFYDAFKKIQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEA
IIHHNYICMKLPGPRGVITVRGEQLAARKYELQGTPSVKGVHVVDQKQGEYIKIQKPIPEGKTKKVQLDEHDPGKFILIG
ENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKTKVIRE
VMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVDATARCELMSFLDAYSGYHQVFMVKEDEEKTSF
ITPFGTYCFIRMPFGLKNAGATFARLIGKVLAKQLGRNVEAYVDDIVVKSKQAFTHGKDLQETFENLRKCSVKLNPEKCV
FGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSKSAEKGLPFFKTLRGANTFEWTAEC
QQAFDDLKKYLHEMPTLASPPKGQPQLMYVAATPATVSAVLVQEEENRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMAS
RKLRHYFLSHDITIPSAYPIGEVLTNKEVAGRIAKWAMELLPFDLKYISRTAIKSQVLADFVAEWTPNEVEQQEEVEKPW
IVFSDGACNAAGAxAAAVVKTPMKQTLKYSVQLAFPSTNNTAEYEGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFE
AKEETMAKYLEEARLNEKHFLGITVKAITKEENGEADELAKAAATGQPLENSFFDIITQPSYEKKEVACIQREGDWREPI
LKYLVSAQLPEKEEEAKRIQLTSKKYKVVEGQLYKSGVTAPLLKCVTREEGMKMVVEIHEGLCGAHQAPRSVASKVIRQG
IYWPTIMKDTEKYIKTCKACQKFGPMTKAPPKELQPIPLVWPFYRWGIDIVGPLPRAKGDLRFVVVAIEYFSRWIEAEAV
ARITSAAVQKFVWKNIICRFGVPKEIVCDNGKQFESGKFQDMCKGLNLQINFASVGHPQTNGAVERANGKIMEAIKKRLE
GSAKGKWPEDLLSVLWALRTTVVRSTGMTPFRLVYGDEAMTPSEVGAHSPRMIFDQKDEEGREITLEMLDEIRVEALEKM
ASYTEGTKSYYNQKVKTRPIEEGDLVLKKVLNEVAVGKLESKWEGPFIVKKKTETGAFKLAYLDGEELKHTWNAISLKKF
YA
>SZ-8#LTR/Gypsy 178-4795 via tfasty with SZ-56, 1 frameshift and 5 stopcodons.  [Oryza sativa]
MDLDAKFDLLFKTIADNEKKRMEAEERTRADYLELKKTVEGRIPAMEKKVEELGESLQSLSTKVEQLEGNTMRQVKFEPF
SAASASGVQGGAKEEQFGGVAGMFTPNGTPEKFSPSPIPFNCDSASPTFGNGMGTMNLSSAIPPMTCPQFTGDNPQMWKS
NCEQYFDVYGILPVHWVKIATLNFSGNAAFWFQSVRNQMSGISWVSLCDLVCSRFFKDRQQALIRQWFHIKQEGSVSEYV
EKFDSLMHQLLAYYNSLLPVYFVTKFIEGLRSDIRMVVLVQRPQDLDSTCSVALLQEEAMEGVKFQGYKRPNNSVMIRNN
SPAPIVGQASTPQKIFSPQITEDRRGTEAARARDDRLSALKSYRRSKGLCFTCGEKWGKDHKCATAVQLHVVQELLDILH
SKSPTxIESSGGEQEIDEVGDLMSISQQAVWGTESSRSIRLIGWVQGTELLMLIDSGSTHSFMDETVGSKMVGVSPLRKP
LSVQLADGGSLLCSHEIANCKWWMQGHSFSSNFRLLNLGGYDIILGMDWLEQFSPMQVDWSQKWMEIQVNNQPVRLQGIT
SQTNSCNAISAEQCLGMARKGSILYLVQLTSSVSEICDTMPEAVHNLLLKFQDVFSEPTELPPKRYCDHSIPLVPVATPV
NLRPYRFNPALKDEIEKQISDMLKSGVIQPSHSAFSSPALLVKKKDGTWRLVIDYRKLNAITIKGTYPMPIIDELLDELS
QAKWFSKLDLRDGYHQIRMAPGEEYKTAFQTHTGHYEYIVMSFGLTGAPATFQSAMNDTLKTFFDDILIYSPDFESHLDH
IHQVLALLSEHQWKVKLSKCSFAQQQHTYLGHTISATGVHTDQSKIQEVLNxPVPTTIKKLRGFLGLAGYYRKFVKGFGL
ISKPLTNLLRKDVPFVWTTATDSAFNQLKxALVTAPVLALPDFKKVFIVETDASEAGIGAMLSQDNHPIAFISKALGPRT
KGLSTYEKECMAILMAVDQWRSYLQLGEFIILIDHHSLMHLSDQRLHTPWQHKAFTKLLGLNYKICYRKGTSNAAADALS
RKFQDDNSELYHISSSTPLWLQEVTKGYAQDPFSLQFLTELSVCPTSRKHFSLSAGLLKYKGRVWIGNNDNLQLQLMSAL
HDSPIGGHSGFLVTYRKIKQLFAWPNMKKMVKTFVHQCQVCLQAKPDRAKYPGLLKPLPVPEGAWQTISLDFNEGLPRSE
HSDCILVVVDKFSKYSHFLPLAHPFLALSVAKLFMKNIFKLHGLPLVIIFFRDKVFTSQLWEHLFEGAGTKLHFSSAYHP
QSDGQTERVNQCLEIYLRCFVHSVPSKWAAWLHLAEYWYNTSYHSAIHATPFEVLYGHPPNHFGIGISDCSIPEMDTWFK
EKKLMQQLVQQHLHRAQQQMKHFADKKRSFRTFAIGDWVYLKLQPYIQTSVAVRANHKLSFKYFGPFQVIxRVGSVAYRL
xLPPHSSIHPVFHVSQLKSAVGFSGLVQSKLPTDTSTLQFPLHILDRRLAKKGNSTVTQVLTQWSDSLPEEATWEDMEDL
RSRFPAALAWGQANFQGEG
>Saci-2#LTR/Gypsy 268-4416 [Schistosoma mansoni]
MEVFTKKRDENLNEPPVIPVKPTTGSAPRQPPLLENSSDYTVWKFKVAAYLRKVPASEQFDYLVSYLSDEATKRAIVNGF
AADNTLAQNWKILDDCFSTPVDPQQAAIRFLSRHQTPGENPMDYFNSLQQMAVQAFPCLDATGRDELIKSRFVEGLLSSS
LKEHFLLNPPTDINSLKRVTFRFMAAEQLKSPLDMHQPTAMAVMQPTKASRPLNPQRISNVTRSSHWNSSRRQFNPTEKK
WRPTNSYHGRQSECPYCRRFGKNAKKCGHNRFGNTSKPYIFHLSSYANHVRPITIKARVQGIDIEVLLDTGASVSLIKSE
FLGRLNRKVQQTRHPSTLLTASGDPLKVNSKVWLDLMIDRHSFRHGFFVCPTLTWDMILGVDFMLEHKACIFMDSLEAKF
GETKIRLHHTNTPFKAVSYVGISDLVRQVNDNRTLKEKDRHATIAVPQQFSSVFEESISGNRTSTVQHTICTGDHRPLRQ
PPRRVPVHYQPQLDTMIKDMLDKNIIVPSSSPWASPIVLVKKKDSSLRLCIDYRRLNAITKRDSFPLPRIDAILDALSGA
CWFSTLDLASGYWQVEVRPQDRKKTAFVVPNGLYEFQVMPFGLTNAPATFQRLMQTVLQDTVPHKCLIYLDDIIVYGSTP
EQHNANLKAVLHRLQQHNLKVKPSKCRLLQKEVVFLGHRITADGVGTDKEKTRVIVNWPQPKSPEDVRSFLGLASYYRRF
VRDFASLAAPLHRLTHKGRKFLWTTECQQAFDALKTRLSSPPILAVPDTSANGGEFILDTDASSSAIGAVLSQVAPDGQE
RVIAYASRRLDKSETRYSTTRREMLALVKFLQHFRHYLLGKPFRVRTDHRALQWLRSFREPEGQVARWQERLQEFDFTCE
YRPGSRHTNADALSRIPQTAGTVNAVLSTAVEIDWPSLQAADPDMQIIYQRQLQGNNKPSMKELKDQSLTTRRICTKWSN
LKLYGDTLFLINEARQPLLVVPRIKVESIVEQVHRKLGHAGERRTEYAVRQRFWWLSMHEDVVQICKNCNTCCRFKSPRQ
TSRAPLTPMVTTGPHQRVGIDIMGPLTTTKKGNRYILVMVDYFTKWCEAVPLPQQDALTVARAFIDHWVSRYGAPFSLHS
DQGPAFESRLIAEICQLLGVRKTRTTAYHPEGNGLVERTNRSIKAILQAFVSRSSQELWDDVLPQCLLAYRTSVHGSTGF
SPAILLFGHELRLPVEIQTPLLPCEEQEHVPYIRTLRNRLADAYRLVSSNLRKASEHQKDLYDRRVHGPVYKVGDRVWLR
RPMASSGSCSKFHQPWQGPVEIVLIRSSTTFVLRNLQRPQDDVITVHYNQIKPDRMTVSSDAQFANPPPATTFYEVPSEG
GTAYPCPRPGTEDSAYLREGAV
>RN12_gagpol#LTR/Gypsy 18-4675 via tfasty with ATGP4_gagpol, 4 frameshifts and 11 stopcodon.  [Oryza sativa]
MVQGDSSAVAKLQDTMSDVLSGLSLLASKSDLVDLRRSVAVVTSRLTSLEQHHGLSAPPNNSSAPRLGGTGILPNPSQLP
SGADTATEHSSDSGNNGGGVPRYYKLEFPKFDSKEDPLNWLNHCEQFFHGQRTDAGDRVWLATYHLTGNAQEWYFHHEQH
KGPPDWDTFKDLCYAQFGPPIRHNPLGELKRLTQTTTVAAYQCRFLALASRTAELLTENQQVQLLTAGLREDLAIDVEIN
RPDDLQEAMSLARAFERKALKQADGTQGRSQHLRLGGCGMRISHETExPILIIYFTLKKMRNHMLILQILVLPNVFxTCx
LTKLIIISSYTNKLDKYLSxLTLIxSKNCFNTDxKFRGGCSDSGVGIGGCWHPPPLGCATGGTHPIGRTSFRTAHATVPA
TPSGAGATATDNADSAPKQFHQLSLAELVDRRRQGLCYNCGEKFVRGHKCARLFYIEYDETAPDDDIPVADDDHSANEPH
VFLNAISGIDGHTMNLPVIVGDERVVALVDSGSMHNSVQPQLVQHLQLPLSPVHSDLHVIVANGDRLVSPGLCHDLDIMI
DGEPFTIDCYALDICSVDIILGTAxLSTLGPILWDFKSMRMAIWRSTQEITLYSLAGSRPLLCAALANDDLLPRLLAEFD
DLFAEPQGLPPACTIDHRIHLKTGSVPVAVRPYRYPQLQKDKLERQCATMLQQGIIWPSTSPFSSPVLLVCKSDATWQFC
VDHWALNAVTVKDKLPIPIVDELLDELRGACFFSKLDLRFGYHQVRMHDADIHKTAFRMHQGHFESLVMPFGLTSAPAKF
QALMNTVLAPFLRRFVLVFFYDILIYSSTWSEHLQHIRAVLHVVRDNKLVLKRSKCRFGERTVHYLGHVVSAEGVAMDEQ
KIQAVENWPPPRSVRAVRGFLGLAGYYCKFKRDYGRLKREAFRWxPAADAAFVALKTALSSAPVLQLPDFAKAFIVECDT
SGSGIGAILHQGVGPLAFFSRPLAPxHAGLAVYERELIGLVQAVHHWRAYLWGRTFTVWTNSYSLKFLLDQHLFTIPQHH
WVSKLMGFDFTVEFRPGRVNVVADALSHRDQEDATASLSAISVPSFQVLTDLRQEVAMDTDLSALRDKIRDGTQGLAWAV
CDGLITHKGRIFVPALSPLLPTLLATAHAGHKGVxRMLHHFRADFDTPGTKKLVQDHICTCAVCQQKxSKHLSPAGLLQP
LPVPTTIWEDIAMDFVEGLEGLPRIHGKLVILTVIDRFSKYAHFIPLGHPYTATSVVRAFFGEVVRLHGIPSSIVSDRDP
VFTSMFWKELFGLSGLKLNLSSAFHPQSDGQSESANRVVGMYLRCLTGDRPHQWLRWLPWAEFCFNTVFQSSLKMTPFQV
VYGRPPPALRTYDRGSARVPAVEQALADRDEFLTEIRDRLVLAQDYAKLYYDDKHRDVAFGVGDWVWVRLLHHQAASLPG
FSRGKLSPKFYGPFQVLDIIGEVAYRLRLPAGARLHDLFHVDVLKQYHSEPPASTPTLPATVNGRVLPRPAAVIRGRIAR
SEREVLIQWDGMAAADATRENEAAFRHHYPEF
>RETROSOR1_SB_p3#LTR/Gypsy #ReverseORF 9791-11455 R) [Sorghum bicolor]
MLEVAAAQDLEETLSDVEASVGDLISAKEFEGMAAITFEFGQSTVRAEDIADMVEARFFKEGRAEAPPADQTVPAPEEGY
AVVFRDFFTCGLRMPPYHFLREVMESFNVELQHFSPNGILTLSKFAWACESYGAMPHIDTFCSYFELQRQPKKVKDAEGV
ECIAQFGSCAFMPRRTMPGPRCEISYCQKGKWEKDWMRAWFYVRTPAASKTLDDGSVDKVYPYASLMKELKPFSKVDPSQ
EMSEERIACDKAFALACRYSGGRDLVEEMVAADYWPLGRRTDEFTIEMVQVPVFGPPEGLPFPRFGAGIPEDETKESFLD
RVEVSARRIVGKITEKEFLQRRSALGTMPRFNRVFEELGIQYEDYVIPPDVLLGLEKKKDSSKAVALAESKKRKGGGAVK
QLAKKRRAEVVLEAPVESSSARSSGAESNSVASAPAEAAAAGGAPEAEASRAVSSVRAPFASLLGEESSDAEAPEASPVR
EAIPAAPEGPRVASAGGGSPPKEVQVESSDEAESASVRRIRRAEAPLRSAGDGINSLYMGNDFLLIISFSASFD
>Ronin2#LTR/Gypsy 17-4326 via tfasty with Ronin1#LTR/Gypsy (merged gag and pol at PVRPKDxARQH) [Takifugu]
MDPADQDAVRRTLEAQGRLLGQHDQLLTDIWTSLQTLNASVTNLLSSGRXEQGPPPPPAEAPRVAPQLVAAAPREPHVPI
PERYSGEAGACASFLLQCXLVFDLQPLTYPSDRAKIAFVVNLLSGRAAXWATAVLENQXPVSSSFPAFTAELKRVFDHPV
QSSEAASQILSLRQGSSSVADYSIRFRILAAXSGWNDAALRGVFTQGLSDDLKDELAAREEPGNLEALIGLATRLDNRLR
ERRRQRTSERAVRNSGSVSRXREAPVDSSASVPVPAPEVPPSEPMQLGRTRLTXSERQRRRXAGLCLYCGHAGHFLADCP
VRPKDxARQHRRGVLASGSSSCSPPARLTLSGTLLWGQEXVSAAFLVDSGADDNFISXDLARQARLPVETLPEPKTILGL
DGEVLARITHRTQTXTLVVSGNHREQIXFXLIRSSSSPGVLGAPWLARHNPQIDWSAGRLVSWSVACHTSCLRXAVTPSS
AVPXPAQETXDLSRVPKEYHCLGEVFSKQRALSLPPHRPYDCAIDLLPGAALPSSXLYNLSRAEXEAMESYIGESXASXL
IRPSSSPVGAGFFFXQKKDGTLRPCIDYRALNEIXVRNKYPLPLLDAAFAPLHRAQVFSKLDLRSAYHLVRIXEGDEWKT
AFNTPLGHFEYLVMPFGLTNAPAVFQSXINDVLRDMLNKFXFVYLDDXLIFSEXEEEHVQHVRLVLQRLLENRLFVKAEK
CEFHTSSVSFLGFVVARGQLSPDPAKVRAVMEWPTPSSRRQLQQFLGFANFYRXFIRDYSKVAAPLTRLTSXLQSFXWXP
EAEAAFNRLKGLFSSSPVLAHPDPSRQFVVEVDAXDVGVGAVLSQRSGEDQKLHPCAFFSHRLXPAERNYDVGNKELLAV
VLALQEWRHWLEGAAQXFVXWTDHKNLTYLRNAKRLNSRQARWALFLGRFRFTXTYRPGSRNXKPDALSRQFASXPVETD
PDPILPLSCILGAASWQVEERVREAXQSAPDPGGGXPNRLFVPEAVRSEVLHWAHASRLTCHPGVSRSLQFLRQRFWWPS
MARDTKEYXAACPVCARGKASHQPPAGLLQPLGIPRRPWSHIAVDFVTGLPPSEGHQVVLTVVDRFSKSAHFIPLPKLPS
AXETGELLVQHVFRLHGXPKDIVSDRGPQFCSQVWRAFCSALGASVSLTSGYHPQANGQAERTNQSLEDALRCVAAQDPS
SWSTYLPWVEYAHNSLVSXSTGLSPFMASLGYQPPLFEVQEDEVAVXSVQANMRRCRRVWRQVRAALLRTSRRSQXQANR
HRTPAPSYQPGQKVWLSTKDLPLQVESRKLAPRFVGPFEVERMVNPAAVRLKLPPAFKIHPTFHVSKVKPVAESDLVPPS
XPPPPPRIVDGGPAYTVRSILDVRRRGXGFQFLVDWEGYGPEERSWVPRRFILDNSLLRDFYRAHPDKPGRAPGGAR
>RTIP1_p2#LTR/Gypsy ReverseORF 7905-6776 R0 via tfasty with Atlantys2_p2, 4 frameshifts and 5 stopcodons. Trimmed 22 AA to first M. [Ipomoea purpurea]
MARFLLGPSALVVAAESRHIHDPPEGFVGIHLQSVAFGFRVPPHPFLSLLFRHYNLVPGQLVPNSHRLLTSFIILCHWWQ
CEPDLDLFRYLFTVNKVGSHSPGFIQVAARPGRQLFEGLSDTIKEWKPLYFFVRPRSSSFTFPTLWPATLFKPCSRSAVF
TEDAVKGGDFLKGLGPYSVKYWSGSGPWPSMAFCRRRRHHRxRLFHLFLDLLLTSCGNTHKxVGFFYRPVRFRLLQLREA
IAPTPEMADRAKKMRRRLTQRSTGAAAASSSQPSSVVRPTPPPSHNVVDLTPSPVVSPSRQPPPPSTESPSSKRSAEHTE
GPTPKRIRLCHE
>Ronin2_Cis#LTR/Gypsy 29-3700 [Ciona savignyi]
MSSLPDVLKPMRFDADPNSPKAAKQLKHWLKVFSDFLEKCSRLAGAQNLEPPNKLTTLIAYVSADVYECIEDCTTYDDAI
AKLKSIYIKSPNIIFARHLLATRTQKSEESLRDFLQSLHLLSKDCGFKDVTAEEYRRELVRDAFINGLTSHQIRQRLLEN
QELALEQAFDVASSLSMAQEHSAAYLPRRDVAAAAPPDKDTFDSKTILRSEALGAISRSRKCYFCGNPYHDRRRCPARNA
ICHSCGKSGHFSPVCRSTQALVNNRHPRITDHSAAALTSCSPSLCSTAAACPASLLKASLKVSVNGNSLTALIDSGSSES
YINSSLLSKLKLNVYPSTHQIQMASSAMKIKSSGFCLVNVAIKDVEYISTKLNVFNDLCSDVILGLDFQSQHERLIFELG
GQLSDLVVPSNQMCALTAAITKEASLFSNLSPQIKPIATKSRRFSAEDKAFIKENIDKLLKEGIIQPSSSPWRAQVVVVK
DTSNRHKNRLCIDYSQTINIYTELDAYPLPRIDDMVNELASYSVFSTFDLKSAYHQIPIIQSEFKYTGFEANGKLYEFTR
IPFGVKNGVSVFQRKISEFVQEENLKDTFPYLDNVTVAGRNKEEHDRNVETFLKAVRRRNLTLNESKTITAVPCIQILGY
VVGNGIVKPDPERMRPLKEFPPPSDFRSLRRVLGMFAYYAKWISCFADKIRPLAKATNFPLSPDALAAFELLKEELENAG
LKSTDESVPFVVECDASDIAVSATLNQGGRPVAFMSRTLQGSETLYPAYEKEATAIVEAIRKWSHLLHRRKFTLITDQRS
VAFMLDNRRRSKIKSTKVQQWRMELASFSYDIKYRPGQQNVGPDSFTRAFVSSVSPSSNLELLHNNLCHPGVSRMMHFVR
MKNLPFSMTEVKRVTSACKICAEVKPQFYRQAEGTIIKATQPMERISIDFKGPLQSTTQNKYLLIVVDEFSRFPFAFPCK
DMTTSTVIQCMDKLFALCGMPGFIHSDNGPAFASTGFRNYLIQRGIASSKSSIYHPSGNGQAEKTVGTVWKTIQLAVRTH
LLPLSEWESVLADALHSIRSLVCTATNSTPHERFFNFQRRSSTGTSIPSWMTVPGTVHLRRFVRTHKSDPLTDEVELIGI
NPTYANVRFPNGREATVSLRDLAPCPQSNCFERANMDDPIQPCTNPEREAGDAPHSNESVVNTETNDLDRSLTSGDSETT
GMDNEIVLRRSSRVNKGVPPARY
>GB:AAC52011 mariner transposase (Mariner_Tc1-element) [Homo sapiens]
MNSAKIEARTNIKFMVKLGWKNGEITDALRKVYGDNAPKKSAVYKWITRFKKGRDDVEDEARSGRPSTSICEEKINLVRA
LIEEDRRLTAETIANTTDISIGSAYTILTEKLKLSKLSTRWVPKPLRPDQLQTRAELSMEILNKWDQDPEAFLRRIVTGD
ETWLYQYDPEDKAQSKQWLPRGGSGPVKAKADWSRAKVMATVFWDAQGILLVDFLEGQRTITSAYYESVLRKLAKALAEK
RPGKLHQRVLLHHDNAPAHSSHQTRAILREFRWEIIRHPPYSPDLAPSDFFLFPNLKKSLKGTHFSSVNNVKKTALTWLN
SQDPQFFRDGLNGWYHRLQKCLELDGAYVEK
>Q9X962_SALEN/172-323 transposon family T32 Pfam:PF04986
GSVTLIQRFGSALNLNVHYHMLFLDGVYAEDDYGKQRFHRVKAPTYDELNTLAHTLSHRIARCMEKRGILERDAENTWLT
LEEGEDDTLTQLHGASVTYRIAVGPQQGRKVFTLQTLPGREDKADSSSRVANHAGFSLHAGVMAEAHQRISL
>O31506_BACSU/1-248 transposon family T30 Pfam:PF04740
MKVFEAKTLLSEATDRAKEYKELRTQMVNLRKALKGVADLSDSEFSGKGASNIKAFYTTNVGVADRWIDYIDMKIAFFNS
IAGAAEDKGLSDAYIEESFLEHELANANKKSKSIMSEQKKAMKDILNDIDDILPLDLFSTETFKDELADANDKRKKTLEK
LDALDEDLKTEYALSEPNEQFIKSDFQKLQEATGKGKNATPIHYNAKAYRESDIHKKRRHLKRRTEAYLKIKKEEAKERE
IEKLKERL
>Q9S135_ECOLI/6-115 transposon family T34 Pfam:PF05717
AGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLFIFRERRGDQIKVLWADSDGLCLFTKRLERGRFVWPVTRDGK
VHLTPAQLSMLLEGIDWKHPKRTERAGIRI
>Q8KHQ6_RHIEC/4-113 transposon family T34 Pfam:PF05717
AGVKVFLASHPIDFRKGPDSLLSLVRDAGSDPFNGSLYVFRAKRADRVKIVWWDGSGVCLYSKRLEKAQFCWPRIGHNRV
QLNHAQLMALVDGMDWKRVRSVAVKPPEIV
>Q8KW57_9RHOB/6-120 transposon family T34 Pfam:PF05717
ASTKIWLAAGVTDMRKGFGGLSALAEKVLAEDPFCGHLFVFRGRRGDLLKVIWWDGQGACLFSKRLERGRFVWPAAKDGK
ISLTPAQLSMLLEGIDWRLPQKTWKPLTAGNYPAI
>O81431_ARATH/13-121 transposon family T24 Pfam:PF03004
DSHIWETMCAYWDSEEAIGKSLTYSKARMSDSNGLNGTYVDRKAEKIVQNYEQILQQELSEMEAETSNVSDGESRPWELT
TNELTVIFLEFKADSRGNYYGVGSFNDSL
>PIV_MORBO/195-281 transposon family T20 Pfam:PF02371
SLLATIPGIGKKTLPHLLVAIGDGSSFQSAKHLASYAGLAPRHHQSGISIHKQSSIGFSGQKELRSALFMPAVIVSFGRY
PAFQKFV
>Q05405_ANOGA/40-122 transposon family T1 Pfam:PF01359
HYTPKSNRQSSEWTGRDEPAPKRRKTQQSADKVMAYVFLDSQGIIFIDYIEKGKTINSEYYIKLLERLKDEIATKRPHLK
KKK
>Q9XEQ1_SORBI/395-621 transposon family T21 Pfam:PF02992
KLLRWHKEDRKIDNMLRHPADGSQWRAIDKEFPDFANDARNLRFALSTDGMNPFGEQSSSHSTWPVTLCIYNLPPWLCMK
RKFIMMPVLIQGPKQPGNDIDVYLRPLVEELQLLWSKPGVRVWDEYKQEHFDLRALLFVTINDWPALSNLSGQSNKGYNA
CTHCYEDLDCVFLKKCRKVVYLGHRRFLPVNHPVRKKGKHFKGNADHRTKPLNRTGDDVLEMVKDIK
>Q9SI89_ARATH/199-361 transposon family T24 Pfam:PF03004
GETLWGTMCAYWDTEEAKKRSKTYSKARLSDRNGLGPHVHYSGPKSFQEIQIELSVDSNEDCDLCLQEEKMGRPVPLGEV
FIQTHTKSDGTYVDQKAEKIALAYEQNVREKLSELEAAASAVSDGSSLPRDLTLDEYTTIFLEEAQRQIEEQAAYNEKRD
AEI
>Q9SI94_ARATH/157-231 transposon family T23 Pfam:PF03017
SSAPPDRILIFDWNVEDLIVAEGHLISSDPKELLANNIPLGPNAALVKVDKIFHKDAYLWRPTSEMILMGDALHE
>Y4JC_RHISN/6-116 transposon family T34 Pfam:PF05717
RGLRIMVATQPVDFRRGMNGLVALVGSALLADPYCGDIFVFRAKRCDRLRCIYWDGSGMILSTKWLESGKFIFPPVKDGA
LHMSPEEFSLLVAGLDWTRVKRKPVKRPTKV
>P95898_SULSO/17-86 transposon family T35 Pfam:PF07282
FGELRDVLKYQLEKYGKKLILVNPAYTSKTCARCGYVKNDLSLSDRVFVCPNCGWIADRDYNASLNILKS
>Q8PRS0_METMA/290-358 transposon family T35 Pfam:PF07282
WNKLVTITSYKAEWAGKRVELVNPCNTSQMCSGCGEIVKKELSERIHSCPYCGLTLDRDHNAAINIMRL
>A625_PBCV1/346-413 transposon family T35 Pfam:PF07282
HFTFRMRMKGKCEEKGLLYTEPTEEYTSKTCGVCGQINYLLGSKKTFECFCGNVCDRDIHAARNILLK
>Q24397_DROHY/91-162 transposon family T5 Pfam:PF01498
KRQLAKIVKADRRQSLRNLASKWSQQLAKLSSESGRDKLKSIGYGFYKAKEKPLLTLRQKKKRLQWARERMS
>Q8YK98_ANASP/97-407 transposon family T36 Pfam:PF07592
LSDLESLIEPVTLGDPESPLKWTSKSVVKLAAALNIGGHRTSPKSVYNLLESLGYSLQSNRKTRDGSSHPDRDDQFLHIS
KQVLHFQSQNEPVISVDTKKKELIGDFKNSGTEWCEKArpIEVKMHDFVDPKLGKAIPYGIYDLTSNQGWVNVGIDHDTA
EFAVESIRHWWYSMGKEVYPKSQHIMITADCGGSNSYRSRLWKLKLQELATETGKTIHVCHFPPGTSKWNKIEHRLFCHI
TQNWRGRPLTSLQVVINLIRNTTTTQGLEVEARLDPNlYKTGIKVTDQELETIAIERNSFHGEWNYIIKPK
>Q9HSW9_HALSA/317-386 transposon family T35 Pfam:PF07282
FDRFTDLLEYKAEMEGISVEEVSERDTSKSCSCCGRTRDANRVERGLYVCDSCDTVANADVNGAENIRQN
>Q9R9V4_PSEPU/7-118 transposon family T34 Pfam:PF05717
KVEKVYLYPKPVDFRKSIDGLAALVELDIKVAVFDPVLFVFLNKSRNRVKILYWERNGFCLWLKRLESERFKTSPDPTEV
AIVLTVQELNWLLDGFDLWRNRPHQVLTPRYV
>Q92LF9_RHIME/6-119 transposon family T34 Pfam:PF05717
ADLQVYLHREPIDFRAGINSLAVLVQETMALDPFAPAVFAFCNRRRDRMKLLFFDRSGFVLVLKRLAEDKFRWPRHQETV
MRLTTERCAGFSTASISMRWCAIRCGNTNRWLGL
>Y751_METJA/192-259 transposon family T35 Pfam:PF07282
FSKLQFFIEYKAKWDGLDVEYVNPSRTSKLCPICGCKLDPNGQRLLKCNNCNLVFDRDVVATFNLFKK
>Q981D9_SULSO/210-277 transposon family T35 Pfam:PF07282
LRALQNMLENEIRRRGIRYRKIDPYNTSRVCAKCGYKKGEILGSLFVCPACGYKADRDYNAAYNIALK
>Q9HHX8_HALSA/177-247 transposon family T35 Pfam:PF07282
FAKLHAQIRYKAVEKGIPVETVNPCNTSKECHACGEVGYRPRQATFKCTNDACWMGESQADVNGAINIADR
>O51966_HALSA/81-343 transposon family T11 Pfam:PF01609
YLRDLVEHGLDEVAVPNAVDADIDRFRDVMIADGTVLRLHEFLSDQFEARHEEQAGAKLHLLHNATEQTIERLDTANEKT
HDSTLFKTGPWLENRLVLFDLAYFKYRRFALIDENDGYFVSRLKQNANPLITRELREWRGRAIPLEGKQLRAVLDDLDRK
YIDVEVEVEFKRGPYNGTRSLDTKRFRVVGVRDEDADDYHLYMTNLVRKEFFPADLAQIYRCRWEVELLFRELKTQYNLD
EFNTSDEHVVKILLYAALLSLLV
>Q9RBZ6_RALSO/121-310 transposon family T11 Pfam:PF01609
VNAQLSAKGYLLKEGTVVDASLIAAPSSTKNGSGKRDPEMHQTKKGNQWHFGMKAHIGVDADSGLVHTVLGTAANVNDVT
QAHALVHGKEADVFGDAGYQGIDKREEVQKLKVRWHVALRPSKRRALDKNTVSGALVDELERVKARIRARVEHPFRVIKR
QFGHLKVRYRGLVKNTQQLHTLFALSNLWM
>O87488_PSEAE/82-345 transposon family T11 Pfam:PF01609
THLHQERLAVYQWHASLICSGNPMPIVLVDWSDIREHKRIMALRASIAFNGRSITLYEKSYPLSEQCSKASHNGFLADLA
KILPLHVTPLIVTDAGFKVPWYKEVEAHGWFWLSRIRGTVQFADIGAENWRAVRSTHDLANGQAKSLGCKTLTKTNPINC
HLTLYRSKPKGRTNQRSTRTNCHHPSAKTYSTSAKEPWVLASNLPPESRSPKQLVNLYAKRMQIEETFRDLKSPAYGFGL
RQSRTNSPERFDIILLIALMVQCL
>Q44283_ACEPA/147-393 transposon family T11 Pfam:PF01609
LFVTLFLDQHEHAPARIVLDVDATDDRIHGHQEGRAFHGYYGHNCYLPLYVFCGDHLLSATLRTADRDPGKEALADIRRI
VEQIRSRWPRVRILVRGDSGFARDSLMTWCEDNHVDFLFGLAGNTRLYDRIASLSAEVRDEAATTGRAARGFASFDWITK
DSWTRRRRVVAKAEWRHGNRYHRFIVTTLPQGMSDPRHLYEQIYCARGDMENRIKECQMDLFSDRTSSHTIRANQLRLWF
SAAAYVL
>Q55076_9SPHN/140-391 transposon family T11 Pfam:PF01609
MMAAMIDIYCASYPAPPTAVTLDIDDTCDVVHGYQQLSFWNGHHGERCFLPIHIYDTATGRPVAMLLRTGKTPSGKEAAG
HIRRLVRHLRRNWPDTHITIRGDGHYGRPEVMAYCDAARVDYVFGLPTNSALRADPAIVAVADACAVKRAQRQCPVLRNY
AETRYGAKTWKCQRRVVARIEASTLGMDIRYVVTSLATGSAEHIYDTLYCARGQAENLIKRHKSQLASDRTSCRSANANQ
MRLILHTAAYWL
>T402_BURCE/24-198 transposon family T11 Pfam:PF01609
ARATARKAARSGPDRLLTSRRRFIIDSRRWGRPKTGPNPTDRARPGSKHHIVTDANGTPLAAILTGANVNDVTQLLPLID
AIPPIRGLRGHPLQRPRVVYADRGYDSERHRRALRDRGIEPVIAKRRTEHGSGLGKYRWVVERTHAWLHHFRRLRIRFER
RADIHGAFLKLGCCL
>TRA2_ECOLI/106-296 transposon family T11 Pfam:PF01609
SFKTFTRGEIAHLVIDSTGLKVFGEGEWKVKKHGQERRRIWRKLHLAVDSKTHEIICADLSLNNVTDSEAFPGLIRQTHR
KIRAASADGAYDTRLCHDELRRKKISALIPPRKGAGYWPGEYADRNRAVANQRMTGSNARWKWTTDYNRRSIAETAMYRV
KQLFGGSLTLRDYDGQVAEAMALVRALNKMT
>PITG_10708  (gypsy, gag) putative gag protein for gyspsy element [Phytophthora infestans]
MSRTANLEPDYPTVAHPIFAVTVAPKVEDISHEALTQWVDLRLEYEEIMRARCDSSGEDLKSVMRSVKNSFDDSFLETLC
ETKWEKTKDELTDAFIWNWVMDTERNFRNKALPNIDELFQDQLVMSTTKSNIDARVIDYFHLCNTIVKINGLATLFSTEE
GTKKKCKVLLNSLPGELKNRVKNEIDFRFPGAKSNVSELFKIGTTTRPSKIARLDKRVVREPGTQAAPRIFRTKSEKNHP
GPKGGCWTCGGQHRQVECPEKAEDDAAATRKPKKGRQPGQTRFLRVGGVVDVEYCADSGAETSCISSTALKEN
>Q9UWN4_SULSO/106-282 transposon family T11 Pfam:PF01609
ASDELEVIADATGISTNTGGQYIVAKWGKTRDSKFLKIEIVMDNNEFNVINAEVTSNEVESAVKTVKDLQDKGKKVKKFY
GDKTYDANEVYKTGVEVVVPPKKNASTKRGHLARRKAVREFRKLGYDRWREEKGYGVRWRVESLFSAVKRTFGESVRATS
FAGQVVEAKLKFWAYAW
>Q54404_STRLI/90-261 transposon family T11 Pfam:PF01609
LAQRIRRDMGRGPRAVATIIDSQSVKAASTVGKDSRGYDAGKRINGRKRHMVVDTKGLPLMVMVTPADLHDSAVAKEVLF
RLRLTHPEITLVWADSAYAGKLVTWAKKHLNLTIKTVSRPKDTSGWVLLPRRWVVERSLAWMMNARRHARDYERLIQHSE
ALITWAAITVMT
>O69605_METDI/15-172 transposon family T11 Pfam:PF01609
HHRQPEREKRRKRGACIDPHGYDAGKKIKGKKRHILVDTVGLLLHAVVHPADIQDRDGGVLVMATLFEMFPFLKKLFVDS
GYKGPKFANALAKVRPHIEIEIVKRSDQVSSFVVLPKRWIVERTIAWLNRCRRLAKDWECLNRKALAFLRLASIRLML
>Q5X3J7_LEGPA/150-247 transposon family T12 Pfam:PF01610
VLGLDEHSFNRKVGYATTFCDLAKHKIFDVVEGRSEKDLEGYLNTLEGKDKVQVVCIDLSSSYRKLIRRYFPNAMIVADR
FHVIRLLNQFCLQTYQQI
>O18571_9HYME/37-117 transposon family T1 Pfam:PF01359
TYDNRKRKRSWIRDYETSQAFADAGLTLKKVMLCVWWDWKGIVHHVLLPVGQAIDSKLYCGQPERLRQAIERKRPVLSNR
K
>P94655_CLOPE/18-121 transposon family T17 Pfam:PF01797
VFAPKHRRKEIYGEKKQEISEILRQLCELKGVRIVEAHACVDHIHMLVEIPPKMSVSSFVWVLKCKSSLMIFEKFANLKY
KYGNRHFWCMGFYVDTVGKNKKAI
>Q23826_CHRVT/37-117 transposon family T1 Pfam:PF01359
TYDNRKRKRSWIKDGEPSQVFAKPGLTFKKIMLCVWWDWKGIVHYDLLPVGQTVDSQRYCEQLERLRQAIEKKRPELYNR
K
>O18572_9HYME/37-114 transposon family T1 Pfam:PF01359
YYDNPKRKKSWVSPGKPSTSTPKRNIHGHEVLLCIWWDQQGVVHYELLKPNETVTADVYRCQLNDVLLQKRPAIASSR
>Q25436_MAYDE/163-243 transposon family T1 Pfam:PF01359
HYDNSKRKKSYVKRGGRAKSTPKSNLHGAKVMLCIWWDQRGVLYYELLEPGQTITGDLYRTQLIRLKQALAEKRPEYAKR
H
>P74059_SYNY3/1-120 transposon family T14 Pfam:PF01710
MAYDLDLRLKVIDFIESGDGITKASRTFRVGRATIYRWLGREELAATKVETRQHKINIKELEEDVKNNPDMLLKERAKKF
GITPASLCYQFKKMKITRKKQLLYQERDVQKRAEYQKILS
>Q6V4T5_ENTFC/148-243 transposon family T12 Pfam:PF01610
WLGIDEIHIIRRPRLVLTNIERRTIYDIKPNRNKETVIQRLSEISDRTYIEYVTMDMWKPYKDAVNTILPHAKVVVDKFH
VVRMANQALDNVRKSL
>Q93CQ1_ENTFC/150-245 transposon family T12 Pfam:PF01610
WLGIDEVHLLKNYRCVITDVKNKSVIDILRKRNKDTVISYLSKLQDIDKIELVAMDMWNPYKSAVNTVIPHAKIVIDKFH
VVKLANEALEKIRKAN
>Q52160_9ZZZZ/162-271 transposon family T12 Pfam:PF01610
VLGVDEHVWRHTRCGDKYVTIVVDLTPVRNKNGPARLLDVLEGRSKQAFKQWLQSRPKSWRDQIESIAMDGFTGFKSAAQ
EALPQAQTVLDPFHVVRWASNMLDECRRRV
>O54651_STRPN/153-251 transposon family T12 Pfam:PF01610
IMSWDEYAFTKGKMSFIAQDFDNLNIITVLEGRTQAVIRNHFLRYDRAVRCQVKIITMDMFSPYYDLAKQLFPCAKIVLD
RFHIIQHLSRAMSRFRVQI
>O86927_STRTR/153-251 transposon family T12 Pfam:PF01610
VMSWDEFGFKKGELAFVAQNYETNKLITILDNRRQTTIRNHFLKYPLKVRQKVQFITMDMSGAYIPLAHRLFPNAEIIID
RFHIIQHLGRAFLKTRIAI
>EnSpm1_DR_p1#DNA/CMC-EnSpm 127-2790 via tfasty with EnSpm-3_DR_p1, 2 frameshifts and 2 stopcodons [Danio rerio]
MQWKCKSCSYTSEKRAQLFKHYRISHGAYSRIAPVPCLHTECPCTLKSFNALKVHLSKNHSxQRSAQSSNSSHALVSYKC
HVCDFKEPCSESEYFAHLRTHLRNSEKVQCPFKDCSFETNVYSTFNAHKSKAHQQHCHEDFKLGVMLSTAFGDTQENIVH
SLNDSSGSEDECNMAEEQVNLEDTKQKLEHSLASLFLKMRTILHISENATQEIIQQLNQIHLLSEPLLYNIIQQTVEKHY
DKVDSTVVKKLVRAVTESNVLLHCTNEGGPLSTSNRRASYFMREYPVVSPVEYKVDRDEQYYVYIPIIQMLQKLLNKPEV
LEEVLASGERAKGYSSYRDGTHYRDNSFFSDDCRISLNLYIDDFEVTNPLGTSRKKHKMCAIYWVIANLPAKHTSSLHTI
QLALLCKTDVVKQHGYSKILRPLIEDLTCLEEQGVYVEQLGSCVRGSVLHVLADNLGAHSLAGFQESFRVNFPCRFCLAT
RDDIQIKEVRSGSFEMRTKEKHQQHIQDVLQDRTLVAQYGVKSSCPLSDNLKYFHAIGGYPPDLLHDLLEGIVPVELALC
LQDLIGKHYFSLDSLNNAIKQFPYKFSDRTDQPQPIPKSYKSKQTIGGNGDENWALLRLLPFLIGHKVKENDHTWEIVML
LKDVVELAFSSxFSDDTVEFLNFKISEHRALLQDVFPNFVLRPKHHYLEHYPQLIRTYGPLRNLWTIRFEGKHKSFKKVI
RDAHNFKNVLLMLAKKHQMAIAYHMDGSSFFKPKIQMDRVVSSLLTAFPEAVQEYLHLQSPSCSSVLVSSSVYIDGIRYC
PNMVLSVGSCSGLPEFMQIEKILTVNTEIMFLCEPQSAWYIEHLRSYELCSLHSLQVVLPSELNDPFPLAAYNIRGCLYV
TLKYYICC
>CACTA-1_Roryzae#DNA/CMC-EnSpm 2584-5037 [Rhizopus oryzae]
MKFANDLVVLLHYEPIFPTKLDTLRNAVGIDYTYKGMFRLVVCPECHTLYQPEEVHCDSKCTFSEFRITCNAPLFKPATI
GASKMYANKVSAFNSIKYALTVMFSRPGFESAIEAWRYRTRHNNTMYDIYDGQLWNEFKDRDGNLFTSQARSLLFTLNVD
WFQSSKRNVYSVGAIYLTINNLPRSIRYKKENIILVCVIPGPKEPKDTQINNYLQVLVNDLKELYYDDFFTCTAESPNVP
VPVRAALFLIACDIPASRKVSGFTSFNATVPCNKCSTAFPARYNTHLQRDFSFGLEDIDAWSLRTNIENRYHAKNWKEAT
TKRKRADLEQKFGTRFSALHDLEYLDLVRCTAIDPMHGLFLGTAKKMVKIWRTTICDLTHELYLTDADLKEMQKEANDII
LPAQYTPINQKIASDFSDLKADEWRTWCLALSPLLLKSRLPVRHKENWAKFVQACHIVCRPCITQNEAMIAHKLFHEFVL
GVAELYGPEMVTPNMHLHLHLKDSIQDFGPIYAFWLYGFERLNGDIKKMTVNYKTAFEVTYMKKFLSVVHYGDYIRNLPQ
GIKQNPVMMSSFVYLSPTPSDSLVASSVSTSFDFSLFVSAPLRLNDTFTGAEILPPDTQASARHKVSVNRLTQAHYGYLL
AFYRLVYTDRTFASALIPEDHDDLSTMVLPDISVFAEIEILGQTYRSKASRTTRGCYIEVACNPTIPGKEAEMRIGEVQY
YFSHQLQMKKTIIPNGRVFAPNAFDEHLFAFVRWYNAPLHPFRGFECLGAAYYHNSFRPAGSDCILPVSRIFTCVAMKQG
YPDNHVVFLPLPRKTIGL
>EnSpm12_SB_p1#DNA/CMC-EnSpm 3192-6720 via genewise with EnSpm-10_ZM_p1, 1 intron (5729:5807) [Sorghum bicolor]
MDDREWMYSGRSSFGEWTDEWIKKTDAFLETAFRLAKGARKIWCPCSSCENGLRQTKTDMGKHLCKYGFMPGYIRWTLHG
EPDRMRDEVVRQRVAEFEDEGGVADMIDDFHDGNFIEGRSEDEEPEATAKAYYDMLEAAQKPLHEQTNVSQLDAIGRLID
LKSQLNMSRAGFDVMLTVFGSILPKGHILPKNMYESQKLLRALKMPYEPIHACEHGCILFREEHAEATHCPKCGSSRFVE
QHHGDGRIEQLSIPVKILRYLPVIPRLQRLYMTEESAKQMTWHKHGRRYNPEKMVHPSDGEAWTHFDSIHHEKALEARNV
RVAFATDGFNPYGMMAAPYTCWPVFVIPLNLPPGVCFQAQNIFLSLIIPGHPGNNMGVYMAPLIDELIKSWDEGVLTFDR
ATKTNFTMHVWYHYSLHDFLAYGIFCGWCVHGKFPCPTCKTNVQFIWLKKGGKYSSFDKHRQFLPIEHPFRQDIKNFTKG
VVVTDPPPEMMTGVEVRAQIDALEVSEGGGFVGYGHEHAWTHKSGLERLPYYQDLLLPHNIDVMHTEKNIAEALWGTIMD
IKEKSKDNVKARIDLAAICDRPNQEMRPPRAGKTWRRPPADYMLTRPQRREVLEWFQNLMFPDGYAANLRRGVNLSTMRI
NGLKSHDYHIWIERLLPVMVRGYVPDHVWQVLAELSNFFRQLCAKELSRSVVKDLEKMAPLLLCKLEKVFPPGFFNPMQH
LILHLPYEARMGGPVQFRWCYFVERTLKVVRKKCRNKCKIEASIAEASILEEVSNFTTKYYGDNLPSVHNRQLRYNVGEN
ESNLSLFRGQLGSASDWTQKTLRHDEWRIIMFYVLSNLTEVQPYIGEFLHEFWHLSREPTAQESESLLKKGAGSRAPDFI
SWFQQKAQNDESMSAELRQVADGFAYRVRTFSAYDVNGYRFHTTMHEQCRPNRTTTNSGVFTRGDDEVDYYGRVEEIYEL
SFDGWKPLNPVIFKCHWFDPAVTRKTPNLGLVEIRQDCELPGEDVYVVAQQATQVYYLPYPCQTKEHLKGWYVVNKVSPH
GKLPMPNDDDYVFDPNTYAGEFFQEEGLEGSFTIDLTDPIGMDINYERVVEDDDGDEVENAKDIELLRRLHIGDDNYANI
LPSDGADLIEMYDSDDPSYDPANPDHEEYF
>EnSpm-2_DR_p1#DNA/CMC-EnSpm 5074-7521 (may have more exons) [Danio rerio]
MKCFVCETELNGSKLLVRHFRFVHGLVPGKSLRLKCVEAGCGSEFGTFSGFRKHLNIKHPEQCEQSCDPSGICETEEENS
AAMFHQSDSAEDVATTSVMLKSNKNTLDMCASAVAQLKVAGLSQSAINGFVSSMEEVVFEIHSQAQDAALLCISSEDTVS
KRKIEESFTNLENPFTLLNSEVKRQRLFTAKWGIVEPSEIVLGTRFDSRRNKTTGTFDQVVVTDKFSYIPILETLKTILK
NPQLTDLFKPRHISKEGIYVDLSDAAHFKSSPLFSTEKDALQIQLFYDDFETANPLGSKKGIHKLGAIYFSLRNFPPVFN
SSLVNIHLCALFHAQDVKRYGFNSIIEPLVNDLKVLEIEGVKNPVSGRCIKGTIVQVTGDNLGLHSLFGFLESFGARYCC
RFCLLEKHQFQSVFSEDSPEVELRTAEMHALHCETLQSDSTLPHVYGVKRACLLNSLKYFNTATNFAVDIMHDILEGVAQ
LEVKLVLQYIQHNFLSANDLDGRVHAFDYGYNQQRNRPPKVKLLDGSNDLGLNAIQSWCLLRNLPLIFGDLIHKDDKHWH
LLLLLLQIVNIVFSPVLTDGMTTYLKHLIIEHHRLFKMLFPQKNLLPKHHIMIHYPQCIRKIGPILHTWCMRYEAKHKFF
KTQLKSFKNITKTLAKKHQSCMAMYWESFSQYRLTLGPGKMVELREIRGGPEIASKLGVVISEIVYAVKWIKHHGTEYRP
DFIICTEVAHEMPVFCKIMTIAVKNENVLLCGTLMETVCFDEHYYAFTVRLHPDKVLTVVNVNELCYFKPFDLQRKYGTT
DSVLHIVPYCHFMQT
>EnSpm-1_TM_p1#DNA/CMC-EnSpm 2991-6406 via tfasty with EnSpm2_OS_p1, 1 frameshift and 1 stopcodon. [Triticum monococcum]
MKSHDCHVLMTQILLVAIRGFMDGYRWQGDEDDYEVVHGGWARNEEGQQDNHRGEGRREDEESPGHDHDGDAVHSHHVED
ARHDDEEDQDKGHDHEDEDAGADDDGGWVQDPHIQELLLKQTDNARAAAREKAKLDQLEIDAVTPLYEGCRPEDTRLKVT
LMALEMKVKHKMTDACFDEDMSFWHKRVPKGNKCPTGFEEAKKIVCPLDLPHMKYHVCMNNCIIYRDKHTESTICPVCGV
TRYKKRKKAPRKVVWYFPITPRLQRYFADPKLAKLLRWHTDREEKKREDDGNDPEINKKDKMMSHPKDASQWQALKFEHP
EFGDDPRNIMLGASTDGVNPFGSxRSTHSTWHVFVWMYNLPSWLCMKRKYIHMSMLIEGPKQPGNNINLYLGLLKEELDT
LWKTPANTWDAAEKEYFPMRAALLTMVQNYLGYGYLAGQVVHGFSGCVRCMDDTAYRQLDRDPGSSKTVFMGHRRWLRDD
DPWRKRKDMFDGETEPQRRPRTRSGEEIDELLKNWKDCPLPGKKQKASKPGKKRKAPEPLLMVWKTGSVFWDLLYWKIHY
VPHSLDVKHITKNVCESLLGTLLNMPERTKDGPKPRADLKSMGIREELHTNDDDETKQDTVSHRKGKKAKKTGNDYPPMC
FTLSQEEIEQFFTCLVAVKLPYGYAGKISRYLDPAKQKFSGMMSHYCHVLMTQILPVAIRGIMDAHVRETLFGLCNFFYV
ISWKSVGVRQLRRLQEEIVVILCKLEMYFPPAFFDVMVHLLVHIMEDIIQLGPTFLHSMMPFERMNGIIKGYVRNMSRPE
GSIARGFLTEECISYCLNYLGIENPVGLPVNRHLGRIAGWGHREGRREMHVDFEVRLGDFERANLVTLQHIDVVDPWVVE
HKTFIEKTYNDQGQQRTYGDIIKEHNSCSTRWFKQKLLSYPLHEDSSAEEQLIFALSQGAEHNLMTYEAYDINGYTFYTE
DKDMKSDGYQNSGVTMESYTGNDKDRYYGRIEEIWELSYAGEKVPMFRVRWAKSVLKEDRYFTTIVIPEAKSKTAGANVT
VKNEPWVLASQLDQCFFITDPSKPSRVVVRIGKKKIIGMDGVINEKDFDKYGDPKMEHDDDDEVAAYTTRRSRTTLPKGR
PLHRRTPFAKNKGKKIVNR
>Chapaev3-4_HM#DNA/CMC-Chapaev-3 454-2106  [Hydra magnipapillata]
MPRTCKNQADNFCYICGEMTLKRCRRRLTPHVKKLYELYFGCKVGDQDKNWAPHACCVRCASSLSSWANRTGGGPTFGVP
MVWREPQNHCSDCYFCSVNISGRNSKGKKAIVYPNLPSAIRPVPHSAELTVPEPPSEIPNTESSDSDEDTDDDDSYELPE
DTERKPHFITGSDLKDLVRDLYLTKQQSELLASRLQEWHLLAGDARVSSFRKRSRELQQYFSMDKELCFCNDISGLFDDL
GIQYDSSMWNLFIDASRYSIKAVLLHTGNVLPSIPIAHSVTLKESYVNISLILDRIKYRDHRWSICADLKVVAILNGLQA
GFTKYMCFLCKWDSRMRSEHYMRKCWPQRETFEVGSHNVIHEPLVDKEKIVLPNLHIKLGIFKQFVKALDHDKPAFQYLQ
TKFPKISDAKIKEGILVGPQIRELMLDETFSVTMDQYELAAWDAFKRVCQGFLGKHIAPNYADLVDRLIASYQQLGCNMS
LKLHFLHSHLSFFSVNGDVYDENGERFHQSIATMESRYKGKWSPAMLADYCWNLHRDEPDAAFKRQAKYN
>Chapaev-3B_HM#DNA/CMC-Chapaev 456-4425  (8 introns predicted by genewise using Chapaev-3A_HM)  [Hydra magnipapillata]
MATVVATNHILCLMKLCRLCGNYIGHDPVNTENIKIRIDQAFFTELEEDRLDTHPPKICMKCYTNLRNIEKRGTTSNFSL
SQWPLTCFIERCICFWKNPGRKKKKQCGRPSINDKVIWTRESICKIMESFSGLSRLCHDSIDVADNPHKDLCVCKICMRL
LHKPVLLNNCQHLFCATCIFPYIIGKLETETKCTICFSNITLGSILKATSMQNILDNLFIKCCNNTCKEKFTVKNISFKE
EHEKTCKVRNKSQYSSPSSSSSLTVTEIYKINEHCEIPKELDYAFAHFAKLKMAKNKSHSFELPSGGPRLLYFRFFHTKN
VKLPSLSNQRKVSKYWSGDDLIVENKKFLFELKNKKETFEIKDTPTAYINDLPSHLIKLLDKLERYNQLTYEKINQSEIH
VKVGGDHGGGSFKMSYQIANVSKPNSKNNTTVFNIFEAKDYRANLKIGLSRHIDEIRQLQTMKWREKNLRVFIFGDYVFL
CAIYGITGATGRHCCLFCEITSSEMQLNTENRNRQINLRTLQTLKSDYERFKNNGGNIKNAKKFNNVIDEPLFDIPIDQI
AIPALHISLGIFLKFFDMLEAECHLLDVKLAAFLAMNDKRLDSIEFDKYVKKQVEISQLKYVIDDINNKIILIQDTCVVE
VLRNPENSDYLQLIYTERIALLKSKKIEKVLNSTRNNDLFLEHXCCKVKLLEGLGPIIKGIESVLQSCGVQRQAYHSCSF
IGNHVHKMLKVDNIKKLCDAIPLVLFINIKHQEHPIHVEAINIQQFNILFNNYSKCHNKMNSCYLFSEENIKSFSKHKMH
MLENHMGVILSSWGIGLGLYEEQGGESIHAEFNNIGRIYSSMSGTRKLESIIRGHIIRNSIMAKSLKPPIVPRR
>Chapaev-3_HM#DNA/CMC-Chapaev 451-4860  (8 introns predicted by genewise using Chapaev-3B_HM)  [Hydra magnipapillata]
MATATAANHLSCLVKLCRLCGNYVGNDSFDVISIRVRVDQAFFTEVGEDRAETHPPKICMKCYTVMRHIEQRGTTPSNFS
IKHWPQTCSLERCICFVKKSGRKKKKQCGRPPSGNKVIWTRESLNVILDSFSDMSRMCYESINIADHPHKDLCVCMFCKR
IIHRPVLLNNCQHLFCATCIFPNLIGKLETEAKCPICCSNITLGSISKATAMQNILESIALKCSKNTCNDNCVMQFDTKS
ISNKEEHEQVYKSENISYSCSASSHSSLTVADIYKIDKTCDIPKELDYAFAHFAKLKMAKNNSHSFELPSGGPXVISYFR
FFKSKNVKLPSLSNQRKVSKNWSGDDLVVEDKEFLVESINKRGTFDLQQTPTAYINDLSSHLIKVLDELERHNQLMYDKI
TPREIHIKIGGDYGGSSFKMCYQVANVVNPNSKNNTTVFNIFEAKDYRANLKIGLSRHTDEIRQIQSMKWREKNLRVFIF
GDFEFLCAVYGISGATGRHCCLFCEITKNEMQLSMKDRNQTILLRTLESLKSDFERFKNDGGNNKNAKKFNNVIDEPLFD
IPIEQIAIPALHITLGIFLKFFNLLEKESHLLDIKLAGVLAINDKRIDLSEYDDYVEKQVEIFQLKYSIEDINNKILLIQ
DACVIEVFHNPENSENIKVMYKERIALLESKRTEKEGRIAECFKVELNQGAGPIVKEIESVLQSCGVQRQAYHSRSFIGN
HIHKMLLYENIIKLCNSVPQTVFNHINLPEHPIQMEAIGICKKFKVLFEKFSKCHKEMNSCEIFNNTKVQSFVCFILEAT
VNELLTFFRTNWPNEGGESIHAEFNNIERLYSNMLGTQKLESVMRDHYTRNNLISKSLKVPIIP
>Chapaev-10_HM#DNA/CMC-Chapaev 868-2496 (fragment)  [Hydra magnipapillata]
ERMCLKCSGVVKSGIIHLCSDVQAVKNLVNAAYALGSASAERVASSILKTKMEKENICRGEKFTIATHGKPLTIVAGTTD
NKCDRVNFSQVSFGTIIELIKCLELSQCKTKKMCSIFRKSLCFQSSIEGNIVKKLEALKAKINEYFSCKEEEFFEAGDIV
NKSMVYIKDIDEFIHDIITERNIDPLSTIVRVAVDSGQGFLKVTMNVFNPHDKTSNQPDLDDAGVKRCFIVAIVEGVSEH
NGNLRKLVDTLNLQNIKYSVAFDLKCANSMFGITSHAGKYSCLWCEGESLLDGGEKRTLGSLDYHYSKYTEAGKPKSKMA
DYKNVINPRLLYLEEDPDTIIENLVPVPELHTLIGIVSTFGKLLSKLWPGFEKWLNSNYIFFRGYHGVGFDGNNANRLLD
KLDVLSRDIADQGKLDLLPVIECLRKFQAMKQATFGEKIIGDIESVVFEFKMSYANLMEYINTYFENISLNIPWKVHIAV
NHIVPFLKSTNTDNGLGIYSEQAGESVHHEFKKTWIRYKRRQSHPDYAKRLKSSVVEFSTFNK
>Chapaev3-1_AA#DNA/CMC-Chapaev-3 1525-3297 [Aedes aegypti]
MFLHSSEKQSVNCKVKMDNSKCDLVRSLLCNICGLYTPRHKQRNFTQLVIEKYKQYFKRDPQINENFSPNHLCVCCHSML
LKKEHRSILAVPMIWSVPDVAHMYCYSCLMPSLVGRKWCQRSEIQYPKRSLCTLPEKVLPSDGMESEEEETCCPDNHEDD
LPVINSTPTIATSSSYHPQPSTSAGHADNPDLVGQASFDDLTRDLNLPSNLSELLGSRLREKKLLKTGTRTANRSKFDDF
RSTFDEHNGITYLRNLHGLFELFEVDHDPTEWRLFIDGSVSSLKALLLHNGNVYPSIPVAYSNIHKEKYNVLQDILYLIN
YPAFKWKIIADFKLINILMGLKSGNPKFPCFICLWDRNNDGDKYSESAWPLRPSFDKYPGNKPDLYSAILEPLVAPEDIL
HPPLHIKLGLVTQLFKKIVQQNSKVKEHLKDLFPKLSDMKVEMGIFDGPKIRDIFKSTDFDNILTIDEKSAYQNLKLVCA
GFLGNNRANNYKELISNMMTCYKKLDINVTLKMHSLICHLARFPSNLGSFSDEQGERAHQDFKDIEQRFKGKNNVNAMGT
YCWGLVRQKDPEEHKRQSPTKTKYFVVQYM
>Chapaev-17_HM#DNA/CMC-Chapaev 750-2893 via tfasty with Chapaev-1_HM, 1 frameshift and 6 stopcodons (potenitally a damaged intron missed). [Hydra magnipapillata]
MVYKSLYFRYNKKCVFSVFLNCFIFPDRMSLFKPTCTHEENRRKVRLYCAKKTNKPNDIDVPWIKNLVNFKYNIKNSFYP
KAIxESCKSSIRRGKEPLHVKWNKMKIPVQTRSVFVCKCKICIIGSTQGRPKKFKKGRICNAQPPFNSLTCQTCFSIISK
GITHKSSLAVLKCNIIQKLANNVKTIEQIANSLIKDKIDKKGKAILATGGKKVSFTIKRNHDTSNIQQLSINSMIDIQST
LELSNTKILKLAKExRFKAQNRKIVQSGLAAELKRIDQQLDDCFVEDFELFNIKSVEEKSLFKLHLSEQQMSMSFCGKxx
IKKGAYPQNQYIQVSIYGGRGFLKVIxFYNVPLFFLIKNNKCNLLxNIQVCLNIVSNPSETIKNKRRKYGEIKSPNFKEG
SVKASFIIALVPDAPETNHNVKILLNKLCLDKINFTCVADIKLCQVMCGMSPSSMATHPCYICTWNRTEVFKNDCTELRT
LGSLRLSSKLYKLSGSKKIRAKEYFNCIDEVLLIGDDNDLVVNHLSPPELHLMEGATNHIFKTINKLADPVLLKKIENDL
NISKSIRNGSYNGNGCQKILKNWVKYYNLFPVLLKPLAEAFRLLDNLVHSCFGVNLRPTFEKDIRLFKNHYSTLVEDYEM
TVTVKLHVIFQHVGPFCKDKDIGLGFFSEQAGEALHYSFLKEAWERFKVSDNHQKYAKYLKKAVVSFNGKHLNNV
>EnSpm-3_DR_p1#DNA/CMC-EnSpm 2115-4739 (may have more exons) [Danio rerio]
MQCKNCKFSTSSEDVLLKHYQLHHHRISNWPCLYTECVCAFKTAGALRSHLSKSHHNTDRVSRDLSTFNCGLCEFHEICT
EKRFFLHLQNHLKRKETIQCPFKGCGFKTNNRPTFSSHRSRNHRNQTLSDRQSQIVSDSLGVSEVLCTTQNISEFDEEDI
IESVEDVNVHTLERKIASLLLCMQTVLHVSKSATQTIFEELKSILLFSKSHALHTIETIVTKHNINIESVVIKEIADSVC
LTNPLFASISEKGTLSTDYKRNQYFKRNFFVIEPTEYLYEHSHKEVFVHVPVIRLLETLLNQDSFLNNIEFTHKHLPGQY
SSFKDGKYYRESGFVTEDDVKLSLAFYVDEFEICNPLGTSRKIHKITAVYWVVLNLPANLRSTLSSIQLAVLGKSIDVKK
FGFDKFLEPLIKELKSLEHEGLFVEALGHYIKPTVFCVCADNLGAHGLAGFQENFNVEKFCRFCLISRDQISTVKPCDFP
LRTVDQHDLFVEQLKQSAVQSVNGIKSECALSKHLRYFHPVTGFPPDILHDFFEGVIPVELSLCLRDLISKGFITLEGVN
HSIRTFPYKYSDRVNKPKTILKTSLAKGSIGGNGHENWTLLRLLPLMIGDRIPEHEPSWDILMDLKEIVEIVLSNSLSDE
TLCYLSFKFSDHRLLLTSTFPDYALKPKHHFIEHYPELTKCFGPLVTLWTMRFESKHSFFKKVARDAHNMKNVLLTLSMK
HQQMIAYHLDAQSLLKSDLHVEKLDVVSISLLDATLRHAVQTKFPQLHTVSLSRDVCLHGTRYAKNMIISAGHCNGQPEF
FRIESMLIHSAKVFFITKRVSAWYLEHLRSYELVESHYTDMVIFDSGDLNGYHPLIPYSVGSKVFVTLRTYLQH
>EnSpm-17_HM#DNA/CMC-EnSpm 520-2557 via tfasty with EnSpm-6_DR, 1 frameshift. [Hydra magnipapillata]
MSYWTKRRKIQKNVASIFDEIAEANSFVLKDSSLPLNMSCNNSKFDATPESFKPIDTSIFSLNSVFHDCVNSSDGIWETN
DGKLNSSESILSIDKSNVINVLVNDLTSWATRHKITHAALGDLLIILRKSFPGLPKSPKSILKTEQLKVEVFENSYSYLG
IKNGLLSESTECFTDKTVTIQVNFDGLPLFKSSSMQIWPILGLVEKFDGILQCNKKPFVIALYCNNCKPKNITAFLSDFV
LEVNELHKNGITLNSQHYSFRISAIICDTPARAFVKCTKGHNAYHGCDKCEQHGVYNGRVTFPETAATLRTDASFANMSD
RKHHICVSPLAQTSIGLISQVPGDYMHLSCLGIMRKFVYLLIKGPLKTRLGPRAVLDLSEKLLHLKKYICSEFARKPRAF
SDFERWKATEFRQLLLYTGMVCFRDTLPDALYNNFMLFCVGMTILLSHSLCHKYVDYAHSLLVLYVEHSSSLFGPEVVTY
NMHGLVHLAQDAKQYGPLDNISAFPFENYLSNNLKKLVRKPHLPLQQVLRRLSEQHLAESINSETNSTLFQLKKEHFDGP
LCNSENINVQTQHKELYTNKFCIKVSQGDNCFKIKTGSIVLVKNIIKSCCGQIYLVCSNFDSVENFFTYPCNSDTIDIFM
VSYLAKHLSYVLLSEIKQKFVLLPYKAYFVTIPLLHNFS
>EnSpm-13_HM#DNA/CMC-EnSpm 1213-3205 via tfasty with EnSpm-6_HM, 1 frameshift and 1 stopcodon. [Hydra magnipapillata]
MCIFYTILLFAKCFFRKRITNWRNNRSHVFAISQCIDSPTNDSNFSENFAIKTFNCGCLLQSESEIESDCDHQPKINSVS
QSFESFSYPSDNEICELTDNSQSLLKDIRIWVLKHQTTRECVNDLxTIIILLLTILRNHGHQLPKDSRTVLGTLNKVDTT
EMNEGEYKYLGIKEGLETILKHSAYNCDEIKLLFNVDGLPIFKSSGYQLWPITSQFSVFQPFTVALYGGQKKPNPIEFLT
NFAHELKELHNKTVTLCGKSYYVSIFAIPCDSPARSLLKGIVQHSGYHACERCDEAGVSVKGRIVYGTNNSNLILKRTDY
GLRSGQYAQLDNENRSHQHIVTPLYEIQQLDLVQQFPLDYMHLVCLGVMRRILLYLKGGYPQIFSGRLASADLIKISHRL
SELKGKLPSEFARQPRELTEVNRWKATEFRTFLLYTGIVVLKDVLEPKRYKHFLSLALAIRMLCEEETILRCSYLNSARQ
LLNYFVTNAHEHYGDTFTVYNIHNLKHLTDDVEFFQSSLDVFSCFQFENYLKTLKGLVRGKQNPLIEIVKRLHELKDTYS
EKTITITKFNGPTNSWFITEDCICFVNNILPDGRLVCKMYKKSELDNFFKDFVSSKTLQIFLIRKDTLWSDQITCANIRW
RKCVCLAHGNDQVIIPLLNCVKLG
>EnSpm-20_HMa#DNA/CMC-EnSpm 741-5751 via genewise with EnSpm-18_HMa, 3 introns (1412:1480, 1590:1700, 1988:3674) [Hydra magnipapillata]
MASILHPLTCGFAKIAAYNAFMIKIDRESDEGTQIYTSRKYKYQYNQFQNQFQIGDNNNFVLSYSLFVSKYKQIIKNIRL
LGKTYPSIKTEVMQEFSLERWRCLTVKQKTDHRIKDCLGCQNDIKFKYYLSQFPNRCKSYQSIAAKKGLLKHKELMLNDI
TNTIITQLDKDYQNTFQTTFTKTHSKILKIKNKSTEEMSKQRKHIIKNTVLDIENQWKETSVIRTYGKNISLRTRNNHRL
ITSMETFKQAEQRSYEFKEKGVKKPKKHIGSSHAYKDQLNSCLEEVKVYKAGEKINYSDLARKYNIIDNESKMPKNGGQI
VKEFLKENDVNLTSLSELKRRSEEKSPVIIRRKKRRLTDLNVSFPQEETNAQVAAKLNLLVSENKYSLGELIAPQTFSKL
VVRNNEIETETFSIDGRVHPLKVIRDSITKNHWIYMRVKTDEEYEKMSRISIINYLKRINEMQEVDQDEETNNLKIRLKK
FERKRHFMLWHDTSTISNHSHVLMTISTLFDPAIHYTSEEYQQKYNKTINIQAVVEAPIWYIFGRCSATDEMLVYSEQRL
NDIIQMKDPIKNSEIEIYDEMRFFKGDGPSAQFEAGQQKGGNYVCWICDINVVEHSNYSCSLNRACINLQDRQDKVLFTE
QSRKKSHDKIKKLYSYLTKKEIIVELNQQNVNFTKNESKQLLDLKLTKTMHGIQRVPSLIFYQPDISLPKNGLSKYELLM
EPLHDVFNHIKNLLRELPHHFDKKAKTEIESIIELSFEGKDVKRAVDYRSCIIKTSIYCQQKFPQNPLTDIFITMCQIQE
ILYKPESERTNKLILKMYLVIFKHVMLIISNLGENLNVLTVRKFYGKYFHCLVAHTPDQLRIISGRAANTEKEERIFNFI
KTTTSTTSNRQPCHVISNALIRMQVSNDLNNFNEVPLIESSISKLYKFVQPTSNTTITFEIIRNYPNEYQAMLQKIADFL
IEPNIYWYETDVGVTFYDFENVTISKKVPHHFRTKTLIEELDYVKSCWEDICLPNANTLIPAYKIKVVDKVNNKTKLLFL
KTLKKPFH
>Transib1_Dmoj#DNA/CMC-Transib 499-2547 [Drosophila mojavensis]
MSCIYPHIILEIFFLATMSVSKRELFSVWHMETDVSKKTFAVETYIYTNIFDKNKYDDSQCAKIDKKIKNFITKLTCKWK
ENHRILKNFELNNQEWLDDDIILVDRNSNVGRPDLSFEDSQEKTKKKKISDIVKEIPSNELVSAASTSLYNCGKRSASKM
INLLSTDESIPKKIKSIIQSDDKQPIKYTPEEALALYIDGGYTKKAYTDLQRGTKMRNANIFPTYDVLRSAKKLCYPSGL
VVTDHSFEVPLQNLIDHTISRIYKAHYKDFPSIENNNGSQLTAIYKWGCDGSSGHSTYRQNFNDLNACMVDQHMFSAYLV
PLEILRGSEIVWKNAKPSSTRYCRPLKLICQKETIDLVHDVVNNFKSQITAIQPTNITNFEVHHQFHLTMIDGKVFSVLA
ESSTSVCGICGTTPKKMNDLSAIKNLPCKENLYKYGLSSLHAWIRFLDCILHISYRLITKNWQVRSTDKAAVDMRKLEIQ
KNLRKEMGILVDIPKPGGSGNTNNGNTARKFFQDAKLAAKITGVNYLLIYRFSVILRTLASGYEIDTEVFKHYAFETAIL
FVDMYPWFYMPSSVHKILIHGAEIIEHFALPIGMMSEEALEARNKDQRKFRLNHTRKNCRNNTMEDLAHTLFISSDPFIT
MLAKSTVSFSKKDRFVDKDIISLISNKDSQVELSDCETSDSD
>EnSpm_AC#DNA/CMC-EnSpm 73-1908 via tfasty with EnSpm1_PT, 9 frameshifts. [Allium cepa]
MDFALRNNGNYKEIRCPCSKCKLLKHLIPQMVRVHLRQYGSCELFDLGSSWEQLASNPVQDKEVVSNEIGTTNLVEHMVE
DAHDSIFPVPQLTDDDGNAEEETNIGEKNIYDLLDTTKKPLWEGCTRGIQLSVTAEYIAMKSKYNLIEYGFTAVVQAAKR
HMPPHNLMCENHYEVKxLMSAFSLLYQKIDTCLKGCVLFWKEEYQxLEIIKICNQERYKPRKKKGKEVPYKRMHYLPITP
RFQRLYASSVTAQHMRWHDVRTREEGTLTHSADGEAWKYFDYKYPDFASEIRNVRLGFCADGFSPFSQFGSKYSSWPIIV
TPYNLPPWMCTKTPYMFLTVFVPGPDDPTSSRKMNFRMYASLLWTISHFPAYAMLSGWSMAGRLACPYCMEETRAIFLPH
GKKDSWFVLHRRFLHINHRFRRDKKNFXLNRYETXETTTVWSSEVIYELVKDYPKIHETGEQIEIQGKSSIHNWCKQSIF
WELPYWKNLLIRHNIDMMHNEKNVFDNLFNTILNVKGKTKDDLKSRRDIEVICNRPELRIKPNDRKKPKACYELDNNQVK
LLLKWVEGLRFPDGISSNLCRCVDYKSNKLSGMKSHDCHVMMENLLPFVFSSR
>EnSpm-12_OS_p1#DNA/CMC-EnSpm 1579-4134 (may have more exons) [Oryza sativa]
MDRDWMSEPRTSASYKDGVAHFLSIAFCDVPDDAKVLCPCVNCRNRITQNYDRVKTHLRCAGILQSYTKWIHHGEKYDAP
SLVFAPVSGNPRNIPISGAHKSNVVEVGDGRLDNMEGLLNAAFGREDSFESISSASIVDDGIYFESSYAEPNMVEDENNT
FGDGHNGGEQDMFTRMLKDAKTKLYHGCDKFSRLSFLVNLYHLKCIHGWTQESFTALLGLLSDALPQEADLPNNCYEAKK
IIRGLGLGYQKIHACPKDCVLFRGDKANQESCDVCGSSRWITDKNGYPVESKGKKKPAKVLRYFPLIPRIQRLFSTEQTS
GEMRWHEEGRTKDRLLRHPADGEGWNDLNTRYPGFSANARNVRLGLASDGLNPFRNMSSKHSTWPVMLIPYNLPPWICMK
QTSLILSMIIPGPHSPGNDIDVYLEPLVDELLQLWEGVETYDASARKKFSLRAALLWTLNDFPALAYLYGWSTGGKYACP
SCATLTKSFRLKKGGKFCYMGHRRWLPPDHKYRELGSQFDGTEEKEIAPKTLNGTSVLEMLQGRVFVFGKKVSIAKMSKR
KIQAKKNTNDKGSNRKLKGKRKTCKEKSSDNPRKSKKKPEDWLKKRSIFFKLEYWECNKLRHNLDMMHIKKNVCDNLIGT
LLDISSKTKDDLNARLDLVNIGIRPELHLTIDDKGKQILLPAPFTMSREKKEILCSVIQNIKTPDGYASNICRCVNMKDC
TLNGLKSHDCHVLLEDILPIALRSCYPSKDVMHIVNELARFFKKLCSKVIDVSELDELQRSIVMTLCDMERVFLPSFFTI
MVHLLVHLVEEVKLGGPVHYRWMYPLERYLYCFFLSYIHYSLEITYIFKYV
>EnSpm-4_HM#DNA/CMC-EnSpm 2862-4946  [Hydra magnipapillata]
MSYFYSQRTKKRKIAVVVSQILNSACLSIPDSHVSTCVSEANSINLPINMVQISSSTVPINYLPLLDVSSSNDDLNYLLD
DSCNTEEFNDLPEWVARINDDSDEEDTDYTEELDKSETLKDKLVSWAVKYNISQTACTNLLGFLHKLHPDLPKDARALLS
TCRNVNVRNVAGGEYFYFSLQYWLSIFTERYPLNNNINQLNLHINIDGVPIFKSSTNSMWPILCSVKNTGWCLFPIAIYF
SKSKPTSLTEYMEDFVSEMIMLEKTGFKKSGKCYSIKLDAIICDAPARAFIKCIKPPNAYNSCERCVQTGEWLGKVVMPN
LFAVLRTDSGFRNNADPAHHCISFVSPVLQLNIGLVSGFPLDYMHLVCLGVVRRLINQWIHGLSAYRLSRTTIDFISNKL
VSMKTYTPREFARKPRSLLEYKHWKATELRQFLLYSGVVVLKGILPKELYVNFLCLSVAIRILISPSLCNIYVDYSQELL
KYFVSNFCMLYGNDQCVYNVHSLIHLPDDVRRFGVLDNISSFPFESYLGRLKKLIRSPQSPITQIVCRLSEGHLQHSETN
GVDFKSKFKKIHFKGPVPLPLCHLSQYKKYFGSQFLVSNENGNNCFAIDNKVCLVKNILAENDSNESDAIVVYVEFERKE
PFFTDPLDSSLLSVFYVEKLSYLVKVYSLKKLRTKYYLLPHKNGFVVIPQMHFY
>EnSpm-3_HV_p1#DNA/CMC-EnSpm 554-3871  [Hordeum vulgare]
MSHPWMYGDRRTTAYREGVHSFRDAADANKHGGGYMFCPCVECRNEKDYTSSRVIQSHLLRSGFMSGYNVWTKHGERGVM
MEDDDEEEENDDDNYRSMFPEYADTAMEDNEEEDQDEEREPDEPADDLGRVISDARRGCDTEKERLQFEQMLQDHNKLLY
PTCEDGQKKLGSTLELLKWKAETGVTDSSFEKLLVLMKKMLPRKNELPASTYEAKKLVCPLGLDVQKIHACPNDCILYRG
EKYENMDKCPVCTALRYKIRKDDPGDIEGEPPRKRVPAKVMWYAPIIPRLKRLFRNKDHAKLLRWHMEDRMKDDKLRHTA
DGLQWRKIETEFPRFAADARNLWLGLSTDGMNPFGEQSCSHSTWPVTLCIYNLPPWLCMKRKFIMMPVLIQGPKQPGNDI
DVYLRPLVDELLQLWAEPGVRVWDEHKQEEFDLRALLFVTINDWPALSNISGQSNKGYNACTHCLDQTESIYLDKCRKNV
YPYNRRFLPPKHPLKKKGKHFNGKAEPRGKPVIRTGAEVFDMVKDLKVIFGKGPGSQPVPNGPDKRVPMWKKKSIFWELP
YWEVHEVRSVIDVMHLTKNLCVNILGFLGLYGKSKDTPEAREDQERHKGRDGMHPGQFQGRASYALTKEEKEIFFEVLFS
IKVPTGFSSNIKGIVNMKDKKFQNLKSHDCHVLMTQLLPVALRGILPENVRLAIVKVCAFLNAISQKVIDRESLSGLQID
VVQCLVSFELLFPPSFFNIMTHLLVHLVEEIRILGPVFLHNMFPFERFMGVLKKYVRNRARPEGSISKGYGTEDVIEFCV
DFLPDLKPIGVPESRYEGRLTGKGTLGRKAKVCMDGHSFSQAHYTVLHNSTVVAPYIVRHKNILRSENPGKADSWIKGEH
EKTFGSWLQTHLMNDDTVGDELYCLARPPSSTICTFQGYEINGNTFYTVAQDKKSTNQNSGVRFDATDENGHCLETYYGY
IEEIWELDYGPTFKIPLFRCKWVKLTGGGVVVDQKYGMTTVDLNNLAYMDEPFVLANDVAQVFYVKDMSTKTRKRNQQKK
ISSDEPKRHIVLSGKRNIVGVDDKTDMSEDYNKFHEIPPFKVKTDPSILLNDEDSPWLRPRRKQK
>EnSpm-5_HV#DNA/CMC-EnSpm 2531-3250 [Hordeum vulgare]
EDLYSLSCGPDKPLLVYSAYNVNGVRYHTLDRERKRRTQNSGIMVKGEKNGAEILYYGVLKEVLELMYSKNKHGDRSVYL
FRCDWYDITSKTTGLRDDGYFKSLNHKALRYKKDPFILASQAEQVFYMEDTHLGKDWKVVQTFSHRHLYDVPESETGELN
ATDAYQEDIIAPTFTVNNVDLAFHTFGRDDEEGTPVDPKIIAEIEKNVENNDEDSATDEDEQEDDGLSGNRSEHSSDDEV
>EnSpm-7_ZM_p1#DNA/CMC-EnSpm 4243-5640  (may have more exons) [Zea mays]
MPEPYRKSQDEVQEDIEINGISRCYTRWVYHGEGDIDVQEDDDGTLAVGYEYMSWDGNDQAPLDDEGQAKDVILDDSERG
VQGLIQDLYTAASHGVGGNLYQQIMEEAKRELYPGCTEESRLSFIIKLLHIKVYNRIPNSGFDAILELLSSSLKNVTGLP
KSYNELKSLLRKLGFGYESIHVCKYDCALFWKDHEEDDHCPICGYTRWKVNKEGRKKVPHKVLRYFPIIPRLQRLFISKQ
RAQYARWHKEKRVPVENEMRHPADGEAWKEFDDSFKSFADDPRSLRLAIATDGFNPFGQMTNSYSIWPVIVVPYNFAPWM
CIDQPNYMLALLIPGKKSPGKDFHVFMQPLIADMMTLWNGVSTYDAYEGKDFTLRAAILWGINDYPALGIMSGRTTKGYF
ACVHCDENPCSECLTNKIGFIGHRRFLPSDHAWRKNRSFNGHHENREPPRKIRSLILHNSILYPS
>EnSpm-6_NVe#DNA/CMC-EnSpm 527-4058  via genewise with EnSpm-1_ADi, 1 intron (1326:1807), 2 frameshifts. LArge gap near C-term. [Nematostella vectensis]
WSGANCKKQYLEKFSTSEWDASPEYRKKLHTLGHCICCRDFLFKYQKMFLAKQINLTNPKLSSPFGKLPTQVNYYFSEQN
SIPLTPNNKILRKIGTEIYQKFDAKCKESFSKSFADVLLLVLQAGLQKKLSPVEKKKKRTKXKRKSKHSTESRWAKTDVD
XLFAAREKQRMSQYFKTRQEAVERVQTKGKEERSHVPKEFDGDLQKLMDDVQYWPNQPLNWSAKAREYKIKKKRGPESPP
NAGQLLKEYLSSKGVDVNRFNRRQNGGKRVRRVIQKQRGGEISLPVPWSNTEVRNTVKDLIQNGTCNIGIPIAETEHVKL
VIDADGNVAKAVTKVHGRKIPLQEIQKESLKKNREFLKIHNGEFFEKMTIEEIIXELKSIGEDTTGTMEEMKERLKRFNR
TRHWLIWHDHSVIANHGFMLFCLRELYDPAIHKSSQTYLEETGRKINIQATVESPKVYILGASKSTVDDQMRFVKTRQED
LKNQVSTITNEGIEVNEVMRYMNGDNPAVQMESGTQHGGTFPCAGCDCNINSCYNLEYSLQRPYLTLKESQDLILAVTAG
QGETYHPYKNLKADQLKKEXKSRGLSEEGKKEEIQERLTETLRGKTHLPALLTSRLPGNKQIEELNLQRYEVLYFEALHA
SMNHIKNILAELRHHVTDIDALITLNEILGIQLSKDKVRGVDYRKTLILVTTALYSKVGRNIRLLLVTLCEMCEIFYASA
DRRSPKMILRLHNLCWHHAILCRTVLTPPTALTYRKLFGIYFHASISHASFLLRLHSHRSTNAETFERLFEKITDITKKT
WGERLEDLPSNAMLHVSAEINTKETDAVLKEEGEIIKLAKALPQMGNNTLTKDMLREYAGDWEGHLHQIADFLVPGEGEW
WYETEDTVEFHDGNDEISHRNAPALHHFRSSSIPQEQSYLRESSGERELWxxERALVLGQCEIVKKYDQLKQHLKENPRS
RYYINKYNTHLAHIQVEVLKAYRKKHQELSHSTATSLSEDERLSKKASLKISEHLLNAWKMT
>Q48525_LACCA/2-81 transposon family T8 Pfam:PF01527
TYSRNRYDQDFKKNAVHLSFNSSKPVKIIASELGVPESALYRWRKLYTEDGKQTPFASLEAENRALKRENAELALERDML
>Q46068_CORGL/1-84 transposon family T8 Pfam:PF01527
MPRKTYTEEFKRDAVALYENSPEASIQTIATDLGVNRATLANWVKKYGTAAPNETPSPASVNEAEQIRKLERENARLREE
RDIL
>Q45623_BACST/4-82 transposon family T8 Pfam:PF01527
QNIGIKFNEDFKKMVVDLYGTGRKVKDLSSEYGVSEVTIYKWIKRYSPVKLEDGTSVAADDITKLQKQIRRLQEENEIL
>O85620_ECOLI/17-107 transposon family T8 Pfam:PF01527
RKGCPNYPPEFKQQLVAASCEPGISISKLALENGINANLLFKWRQQWREGKLLLPSSESPQLLPVTLDAAAEQPESLAED
PETLSISCEVT
>Q9ANC4_BRAJA/34-120 transposon family T8 Pfam:PF01527
RSGCRLWSAEIKGRAVFESMKPDARVCDVARRYGVKAQQLTTWRRLARAGRLALVTDDAADFVSIELSDPVASGKSEGPS
RLRLARF
>O86607_STRCO/1-82 transposon family T8 Pfam:PF01527
MGTSKYSPEFRADAVALYHASPGGTYASVAKDLGVNHETLRTWVRDAEQAGRPGAVEATAMDKENRQLRARVKELELERE
IL
>TCB1_CAEBR/2-74 transposon family T5 Pfam:PF01498
DRNILRACREDPRRTSTDIQLSVTSPNEPVPSRRTIRRRLQVAGLHGRRPVKKPLVSLKNRKARVEWAKQHLS
>TCB2_CAEBR/2-74 transposon family T5 Pfam:PF01498
DRNIVRVSREDPQRSSTDIQMVVKTPNEVTPSLRTVRRRLQDAGLHGRRPAKKPSISKKNRIARVAWARAHLH
>TNP3_ECOLI/12-989 transposon family T7 Pfam:PF01526
MPVDFLTTEQVESYGRFTGEPDELQLARYFHLDEADKEFIGKSRGDHNRLGIALQIGCVRFLGTFLTDMNHIPSGVRHFT
ARQLGIRDITVLAEYGQRENTRREHAALIRQHYQYREFAWPWTFRLTRLLYTRSWISNERPGLLFDLATGWLMQHRIILP
GATTLTRLISEVREKATLRLWNKLALIPSAEQRSQLEMLLGPTDCSRLSLLESLKKGPVTISGPAFNEAIERWKTLNDFG
LHAENLSTLPAVRLKNLARYAGMTSVFNIARMSPQKRMAVLVAFVLAWETLALDDALEVLDAMLAVIIRDARKIGQKKRL
RSLKDLDKSALALASACSYLLKEETPDESIRAEVFSYIPRQKLAEIITLVREIARPSDDNFHDEMVEQYGRVRRFLPHLL
NTVKFSSAPAGVTTLNACDYLSREFSSRRQFFDDAPTEIISQSWKRLVINKEKHITRRGYTLCFLSKLQDSLRRRDVYVT
GSNRWGDPRARLLQGADWQANRIKVYRSLGHPTDPQEAIKSLGHQLDSRYRQVAARLGENEAVELDVSGPKPRLTISPLA
SLDEPDSLKRLSKMISDLLPPVDLTELLLEINAHTGFADEFFHASEASARVDDLPVSISAVLMAEACNIGLEPLIRSNVP
ALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQIWGGGEVASADGMRFVTPVRTINAGPNRKYFGNNRGITWYNF
VSDQYSGFHGFHGIVIPGTLRDSIFVLEGLLEQETGLNPTEIMTDTAGASDLVFGLFWLLGYQFSPRLADAGASVFWRMD
HDADYGVLNDIARGQSDPRKIVLQWDEMIRTAGSLKLGKVQASVLVRSLLKSERPSGLTQAIIEVGRINKTLYLLNYIDD
EDYRRRILTQLNRGESRHAVARAICHGQKGEIRKRYTDGQEDQLGALGLVTNAVVLWNTIYMQAALDHLRAQGETLNDED
IARLSPLCHGHINMLGHY
>Q52761_RHILV/1-970 transposon family T7 Pfam:PF01526
MPRRMILTDAERQNFLALPTDDDTLIRHWSLDDDDRRLIETRRHDDTRLGLALQLCALRYPGRLIQRGEVIPSVALSFLA
EQLGIDPEALSTFARRAATRYEQLAILRQHYGFTELSHPLRADLLAFARGIAIAATKDKFVVATLADEMRRRRIVIPGIT
VLERLAGQACTEAEEALYADVAGRLAPDLIIRMEALLGAGRRAKQSGISWLREPPGKAGVSAMRGLIDRLEAVRHAGIPN
DVLQAIPAHRVRRMAQEGRRLTAQNFEQMRPGRRHATLAAFLLEMEIALTDAAIGMFETLIGKSFRQAEATRDKQLLESA
SSATSALDFFANFGEAITAQRESGLSLDEAVTTVTSWEELIQATASAKAVKRPRSEDDLITYLSAQYVRIRRFVTPFLAS
FTFEGNRRNAHFIEAIVRMETAWRKGSRSAEQPWVRKALLLANARWRKEIVGADGAIDRKMLELFLIVELKNRIAAGDIW
IRGSRAYRALDEHMISQQTFAVIKAEARIPVAIPIDVETYLTQKAEALDQKLREAARRLEAGRGDTRIGAKGLRVPAVRT
TETEAATAFARRVATTMPPVRLTDLVADIDRMTGFSSLFEHLQTGRPPSNLRVFYAALIAEATNLGFSKMAHACPGITRR
QLQQMAIWHFREETFTLALAKLVEAQHSTPFSTMFGSNTVSSSDGQHIHLGDGGEVAGSVNGRYGNNPIIKLYTAISGGY
APFHTKIIAATASEAVHVLDALLETDAGLHIIRHHVDGGGVSDLVFALCHALGFAFVPRIPDLDGRCLYGFEPAKQYGIL
QNVMGDRIDADLIRANWDDILRLMTSLRTRTVSASLMLKRLSATTRQSGLAQALRQMGRIERTIFTLDWINDEQLRKTTT
AELNKGESRNSLVRAVNLHRLGRFRDRSQENLSIRASALNLIVSAIIHWNTIYTGRIVDALRNAGQAIPDHLLSSLSPLT
WEHVNLTGDY
>Q57428_ERWAM/1-956 transposon family T7 Pfam:PF01526
MPRRVTLTDRQKDALLRLPTSQTDLLKHYTLSDEDLGHIRLRRRAHNRFGFALQLCVLRYPGRVLAPGELIPAEVIEFIG
AQLGLGADDLVDYAAREETRHEHLAELRGLYGFRTFSGRGASELKEWLFREAEMAVSNEDIARRFVAECRRTRTVLPATS
TIERLCAAALVDAERRIETRIASRLPMSIREQLLALLEETADDRVTRFVWLRQFEPGSNSSSANRLLDRLEYLQRIDLPE
DLLAGVPAHRVTRLRRQGERYYADGMRDLPEDRRLAILAVCVSEWQAMLADAVVETHDRIVGRLYRASERICHAKVADEA
GVVRDTLKSFAEIGGALVDAQDDGQPLGDVIASGSGWDGLKTLVAMATRLTATMADDPLNHVLDGYHRFRRYAPRMLRLL
DLRAAPVALPLLEAVTALRTGLNDAAMTSFLRPSSKWHRHLRAQRAGDARLWEIAVLFHLRDAFRSGDVWLTRSRRYGDL
KHALVPAQSIAEGGRLAVPLRPEEWLADRQARLDMRLRDVGRAARAGTIPGGSIENGVLHIEKLEAAAPTGAEDLVLDLY
KQIPPTRITDLLLEVDAATGFTEAFTHLRTGAPCADRIGLMNVILAEGINLGLRKMADRTNTHTFWELIRIGRWHVEGEA
YDRALAMVVEAQAALPMARFWGMGTSASSDGQFFVATEQGEAMNLVNAKYGNTPGLKAYSHVSDQYAPFATQVIPATASE
APYILDGLLMNDAGRHIREQFTDTGGFTDHVFAACAILGYRFAPRIRDLPSKRLYAFNPSAAPAHLRALIGGKVNQAMIE
RNWPDILRIAATIAAGTVAPSQILRKLASYPRQNELATALREVGRVERTLFMIDWILDAELQRRAQIGLNKGERHHALKR
AISFHRRGEIRDRSAEGQHYRIAGMNLLAAIIIFWNTMKLGEVVANQKRDGKLLSPDLLAHVSPLGWEHINLTGEY
>PIV_MORBO/72-168 transposon family T9 Pfam:PF01548
AISHHHKVSIVNPLYIHAYAKSLGIRTKTDKQDAILLARYGAKENPPLWQPKSDNEIKLTALLKQREHHKRQLIKERTRQ
EALSIYVKSYTDDNIRH
>Academ-1_SP_tp#DNA/Academ 2062-6627 [Strongylocentrotus purpuratus]
PSSASAIRRLRSNSSVAGASKQPSVSAHILPKICIICRQNKTHKDSEGKKKKEPLMLCQQPDGGKVATAAKDKKDDHILL
QIQDRDCVAIEVRYHRSCFRSYTVYQSRKSVEPIKEQKYGKAFLTFCSYVVDKKIIQEKQIYRMTALRRLFVKAVKDVES
KDASNYKTYSLKQRLKRKYPQLCFLQPKKRYASEMVYVETLSTEDLVPGAVGSEGEETDTTTDTDALSDTDTDITDVDES
IEPPTKRQKGGNGRRSKPPMASLRDRYASALDLKDDVMQTRTSLPWPPTSSDLTLDSARTIVSTKLYNFLAWVVGASEDP
EEEEKVKIGAAEDRRILTICQDIIYMATKGRKMMPKHTSLSMAMRHLSGSSQLIGLLNGFGYCVSHTNVLEHDTAPGLQE
IEKGSSKLPSSLEKSSYTTLVWDNNDFGERTLSGKGTTHNTNGIAVQHAHLAAVIPQALPAQSMKKTRQRSLPAPATILV
RFTGQRKSSPEAFDDSVALEMSQYDDVLHSNKEKDAAFYVAKSSQERLLPSWTGFNQLLSSNIPPKATIAYLPVIDASPT
DFNTVHTVLHRSLEIADQLALPAIVIVVDQAIYCKAQTIRWQEPTFLKKIVIRLGAFHTTMTALACIGKRFQEAGLQDIL
IEAGVVATGSVTGVMNGHNYNRSIRCHKLMAEALHRLRWQSFMGSLEEERQHQYREVVASLQGSFPSEFTNQVQGELYQA
MVKEYKDFIEEGKKDATFTFWSSYLDLVGNILLFIRATREGDWQLHLASVRALLPWMFAYDRTNYARYLPVYWIEMSQLP
TTHPYIYNELMKGHFGVQRQDSHGFAQVACDMTIEQTVNRDTKTSGGVKGFSNNQGATNRWVRGHHERALITRQCEVMAG
KGEKSSKRVDLTKSRMTRDQQDVANIMSTINSMTNPFVVDRETDADDLVHLSSGIVASVSVCSDLLKAGEKGDKAFINFA
KTRLQGDTDLNKTITKMKLKTFADSDKAKVNIKGREVVLKSARELLARLIIIGRVRKVDQRKMLSYSLSTYPPAICKEDG
CLVKNNKAALLHQLENLPESSPTVDRLLESVWIVDGMALLQGLIPSRMPATMGQLAKKILKDVVYLARSSSSDQVHFVTD
TYPPVSIKGAERKRRAASGSQRIKITNQDQPVPKQWKKFLANGFNKQHFAKFLYESWSACGEDEFKGVDVYLAHSEECHK
LSCRSGTTVSEAIPELYTTQEEADTRMMLHAKYISNMGRKDIIIKSPDTDVFVIGIGIAAQLEGSKLYFHTGKQDKERTI
NLNAIQCHLGDQISDAIVGLHPFTGCDSVSALYGRGKTKPFTLMSQTTKFIKAFQELGKAFTLTDDLVSTLEEFVCKLYG
MKEISKVNEARYAFFSMATRQEDIMPPNKDALMKHIQRANYQTAIWRRCLESQPDVPSPVGRGWQSVDGGLRIDWMDMQP
AQQSILELTSCKCKKSKCKVTGVDAQCCAPLGLPCTELCECKNCDNMAVPGEEPIIGEEEEAEADEGDNCDDEENFEEEE
LF
>Academ-1_HM_tp#DNA/Academ 949-6333 via genewise with Academ-1_SP_tp#DNA/Academ, 5 introns (2685:2877, 3121:3359, 3646:3831, 4073:4218, 5463:5707) [Hydra magnipapillata]
MQLKRSVQYLTLAETKDAGLLHEAAEQKNDGRILLQIKDKDCVAVGVRYHKICYTLYTQEVRNIQRCPKPNLDISKNYDI
AFQKLCEDIVMERIINNNEIMTLKSLLKKFFYKSIENSDIIIYQSTRLKNRLVSKYPNLVFHKPSNRSESEIVYISNCNV
RFAAESFVNNSSTENTDEDVDSHDDNTKEIPKQNISIELIHFYMVALELRKVIQGIADFTGIWPPVSHLFTIENCVESVP
IVLYNFLCLVLGFSDEPYLYNQRHSITTPLMLKVISIAQDLIYVASKGRTNTYKHLALGMTVRQLTGSSKLIDILNGFGH
CVSSSTVTRHESALAALNVMVNTIVPCNVAKKKFTTLVYDNADFLEETLSGSGTTHVTHGICIQEKYNCNFSNSIQVSRR
LKTVPLPKQVVQPYHLGKKPSFSVSYDSQSYFTQNNLXDLTPSTNVKEQLHFIKYDLAYCFIKLPTISSEILPSWTGLNT
IMSDKNMLTTIAYLPVIDAPVTEISTINEILKQALTIANTLELAHIVLVFDEAVYSKIQLVRWKTEEYLSRIVVRLGDFH
MLMSYCSGISKIYADAGMQDIFIESGIVASGSINGVLSGKHYNRSVRCHKTLYEALQRLCFQSFLDSLVNEENCDIIEFL
SAMRECIVKENDDFYYHNYKDYIESQKFENLCQRYKDFVDVQCQENATFNFWYNYIDMIQILLLHIRATRTGDWALHLSA
VRSMLPWFFITDRVNYARYATSYWVEMKRLAITHPAVNDEIHNNWTSQRQEQYGFSRVACDQTIEQTFNRDSKTQGGIVG
FTRKRSAVHRWIMAQHQRCAIFKQCEIISGSISHTRQRKDLGVSRIKKDENAILDVLSTIKTMANPFDLETSVLLHLSTG
AVATVPLTTDMRNMLCTGEEKVVSFINTRILSSEQDLHSSIPKSKIVTFSSMLKKYSAKTSNGDLVTVKNTKDLFAKLIL
IAKSRNVEMREVLKYPLRPYPMPFATTTGGLVKTQKSKLISLIETPVVDAIVDNVEKGNALMIDAMALLQTLKIITPTFK
ELSDFLLCTVISMGNSFGSSRIDFVSDRYPEVSIKDLERDKRASLGSQTIKIMNPNQKVPKQWKKYMSVGSNKEDLVDFL
YQSWQLSDPSLFCGISVYITHGEFCHQFVPILKTVVVNEVAALHCNHEEADTRLLAHVEHAITNGIKNIIIQSPDTDVFV
ISLSNTFCKDSCLYFLTGIGNKRRIISINAVIQHWNKNWCQAFIGFHTFTGCDTTSSFMGKGKGKPLKVLFEYTEFLDTF
SRLGDSFIISESVLSSLEKFVCYMYQKNSTCNSVNEMRYQLFKSGIYDEELLPPTLDSLRCHIKRVNYQSYIWRNATKPI
HNLDDFQNHGWMVSESGIAIEWLMNPVAPDSILNFVKCNCTTGCDTKRCSCVKSALKCSELCNCSKCDNTAFADDEDVYD
NGVEDYDEYEDEFLEDDLL
>Chapaev-2_ACa#DNA/CMC-Chapaev 605-3445 [Aplysia californica]
MECHDEASHVRYIHELCRTCGGRSLSGKQKLQKRKAYKCIDFAHDILLVFGVTIAVDERSKHSLTICYACTNKIKRSRTH
SFEGTIINARKAAETSSNLWTAFRSDIRASDCSICTHYHRTSMGSKNTPIELVTTKTSEATKTTHSPHRSTFEDSANTTS
NSTAEPSTHTEDNTSHEERQDEDIASLDTSAASSTTGHSEFELQLPPIATSTPSKPTQLMVDSNTSSLPIATSTPSKPRQ
LMVDSSTSPAFKHDKLFSQSLEISPTRPLTKEEEKLNTHLVRRKLNNSSTNTIQCKTRGQPIVLTKLIKARKETSTAKSS
TKRQRSHLLSSVRTHIAGSSQESITTQHAAELKHTKVATRKSICEKAGINLKPHMSNQSVMAMKEATDLTWSQLRQQRRF
LKQAGLSLPNEKEQRRAMEGLFADDIVTQVENFVDTTGQIHSTLLGRVANITDFIVRLLETHKQQGTLTWHNSTIPTDEI
WIKFGGDHGKNSMKFTMQIANTRKPNSKHNTFVVAMANIKDTYENLKICMSILQPQLDELSKLEWDGKKIVLFLFGDYDF
LVKLYGLSGAQGTYPCLWCHVPKSYIKTGQRRDSLPRTLATLKRDHRRFKKYGKGQKKNVQRFHNSLHPPMIEVEPSEAA
PPYLHILLGIVLKHHRLLENAAHEIDMQLCLQSKNDCKDASASLRAHGNKWKRAEELKKEIELLEGSIVFSNTPDQRENF
EKELSEKQDELSDLDFEPLSPLSGPICSHLDTILDKHNITPQAYHSRSFIGNHCHKYITAKVYRDLTLFIVKKTQECTHR
TDILDTAFILRDTFNELNNAFRDVHLFISHTNPIPYNKIKQIQSCVAKYMSLYRKNFNNKVIPKQHILEKHCVPWIQKNG
FGMAFHGEQGGELIHSSVAKLHRRATSIKNKERQLKVIMRSQHLQSSPEQLAFAPPVKRRKTTPDS
>Chapaev-3_ACa#DNA/CMC-Chapaev 545-3544 [Aplysia californica]
MEHTPESHVSALNCLCRVCGRLNITGKQRKSFKKPYLCSEIASDLFLVFGLSIKDDTSDKHSKFVCLKCYKTIHDAKRRN
SAVSLQTLRNTFDSSQHIWCAYSENCDAKTCTVCEQKRLLSLGCATVKPRDPQSHSSSHEKYTHQASPSTNISETDTTTQ
STCTRALSTDSTQQNDPHTSTSQTFHPHPQSVVPVSDQHVGVQHADTMVQDSHIVAHTDTISQSTSVTNSPIPHDSSCEH
SVSTVRVSPSSSFTPTKGQTFSATPLASSTPAQIHETVRPTQDSTTSPMIKDIETISHAMSKTETHPLTKKEEQLTTRLI
KRKLYSDPKGKTLKCKTKGQPLVFHKIVVPRKPTTSARTPTKKKRAQLVNKIRKGTSGTSGTSGTTADADSLHATELGLV
PRNRRQEIWKKAGTKSQITISAQQALIMTEELGLSFRKGRVHSQLLKDMGVRTESEASQKNLAQQLVQDFVTVKGKLFLK
DNFIETETPFARIRDLPQFLSYLLDEYDAKDMLTWRDGIIPEEQIWVKVGGDHGKNSFKATLQVVNAHSPNSQHNTVVIA
MASMKDTYKNIHRFLEGGLVEDIVSLQSHAWRNKTIKVFLNGDYDFLCKMFGLSGPQGTYPCLWCLTPRNRIHAQCEAFQ
LRSLDSLVADNNAFLTEQGGDKKEASRYHNSLHPPLLPIDLDHVAPPYLHILLGITLKHHKLLEEAADKLDLKIVSQSDA
SATEAGAKVKKYGGQWRKVDELKAHLDILQGCIVLCHTDVDKAQYSQELEQTEHTLAQLSYLELTPRSGPIASSLDNILK
AHRITPQAYHSRSFIGNHCHKYLNEVVYKHLTEEIVTQTRRLTCDPFIVDEASIVQFTFDDLNKTYSDIHRAISHSRPIN
KDALPELQRLVDTYMATYRRTFPNKTIPKQHILEHHCIQFITQHSAGLGLLGEQGTESSHQTIAKLEKRACGINDEIEKL
KFIMKKHLLQTAPSLRHTPKPKTTRTSPRTTEASTSSVY
>Chapaev-2_HM#DNA/CMC-Chapaev 773-2919 (One Genscan-predicted intron)  [Hydra magnipapillata]
MPNKAKNHEDCRKSVCFLCMRKGDRELTDFIIGRIHKLLKTDIDFEDERVPQAICNTCRTLLQKRDAGDMSVSLPAIYNF
SAVVVKPLTRTSGPCDCLICQIAKLKLNQKHPLAPKEQTRNLDQGESSKPGPSPNSRLKSSEKRCTQCLSILARGFRHSC
TIGTRHQNLQALVQSDPVGAEQIASAIISSKDASPGGTVRLSQARGGQLFPLTPGPASAHKSTSSTLTMQSLLNVQLNTG
LSNTGMRQLASTLNKSTETRLVEPFFQQKFAAVGKSLNNFFQLSVVDISAEKGKTEEKRAIVHCKNLEDLTNKVLLSREY
GYNHFVKLGIDGGGSFLKMSLSVIKVTDEDDETRSPQPKSLRLLTSSTARDTGVKRQLIVAIAENVSETYENVKVMMNII
QLNDVSFCISCDLKMANIICGIQSHSSKHPCCWCNIDSDNLSECGTSRSFGSMKEKFEAFVAAGSDTKSAKDFDNVIHPP
LISMDDSTLILDVIPPMELHLLLGIVNHLYKNLSDLWPGAKEWPTLLHIQLQPYHGGHFAGNECHKLLQNLDILQMLAEK
ACAYQAFGFIETLRHFKEVVTSCFGTTLQEDYKEKIQKFKTSFLFLPISVTPKVHAVFYHVSEFVEKHQTSLGIFSEQAT
EAMHSRFKFHWERYKRIPTHPDYGKQLFNCVVDYNSKHL
>Academ-1_AMi_tp#DNA/Academ 464-5175 via tfasty with Academ-1_NV_tp, 1 frameshift and 1 stopcodon.  [Crocodylidae]
MELIASLSPAKRGRYDSESTRCIICLEVGSQSTISQSTPAGIARINEALIQRRTVAEFDTCYGSILDRLSHCVDPALQHS
KSLNWHRSCYSSFTHKGHIERLLRKSRKVEDERETYQQHQVKNTPRTSSRSSTPAVHWRMCIFCQKHSNKKRLSQVLSFE
SANAIHKLAEKNEVLRCRIGVEDLIAAEARYHPECRREEQRKQQVSRSHSHVEIAQEDILLSPEARAWHQVIDELDAGFA
RKNVYSLKDILERYCDLVEDEGGERPLTTLKQMKQELQTYYKTAIQFQHQRNANLPLLVFRTVTTGKAVQAVVTLHINDE
EAVGLQFREEFSDTRNLYYAALKIKADLKVIAGMKGYSNLNEEQAQKCVPDSLYTLIRLILEDDNDDLDVESHAQDKNLD
RDVLNICQDLVYLQSRGKKLTPKHVGLGLLIHHATRSKKLVQSLHAAGCSIPYDTVRRIETTIAEKNLKEFWENGVVIPR
NLVPGHFVQFSSDNIDILEETLDGKQTFHATQIVAFQRGPSKPTEIEESTDVIGRKRTLKDVPPEFNKVIPAMMTRNKSL
KPPVHSTGSNTNEKLDNTAVQQMSAELPWILGRISADNQENVAVPGWTAFNQFLSDDTSPPSIVGFCPILPAPASEYDTI
WTVIMRCKTIAGRLGQQHAVITFDQALYCKANELVWARPEETEGVIIRLGGFHIIMVYLTAIGQHFAASGLEDCWTESGL
FSENTATNIMKGKLYNCAIRAHKITFEAIWHILINEFIVWLSSSSKGLDYDVVDQLSSSIAVAFRNDDCEAGRNAVKELL
VHLPTIVTLLQEFVEEHSHQGTFKYWMNYLEVVNTLLCFIRAEREGNWHEHLCAFEEMLPLIAVHDHTNYTRWGPVYLEC
MKDLANFAPTVYAEFVEGGFGVKTTNLPFVNISTDQAIEHVNKVCKIAGGIVNITRNESARQxWELNYNERGHLTEMVNQ
MFGINTTTSFNHNERQRTRLKRDYNDVKLLQEQFERFHLFKVSNDELLRISTGDVVPEDIALDILNARDKGREIVNTIIQ
KRLTADATESFYANIPKSKLKTFKDVKSTMGQRSKMKQMQNAKEIQQRLLAAVAAGRRFDVHSLLQHELSGYPPSLFKPD
KSLNVADKAALSWILIGDKAVTVLPDATSEKSAVIIDGMALVQRIGKPKTARTFGDLADSFVQQVFANYSNTCNRVDIVF
DRYISPSIKAGTRI
>gi|15793204|ref|NP_283026.1| IS1016 transposase [Neisseria meningitidis Z2491]
MRKSRLSQYKQNKLIELFVAGVTARTAAELVGVNKNTAAYYFHRLRLLIYQNSPHLEMFDGEVEADESYFGGQRKGKRGG
GAAGKVAVFGLLKRNGKVYTVTVPNTQTATLFPIIREQVKPDSIVYTDCYRSYDVLDVSEFSHFSFAETSF
>YI90_MYCPA/74-171 transposon family T9 Pfam:PF01548
LIAAGQRLLYIPGRTVHHAAGSYRGEGKTDAKDAAIIADQARMRHDLQPLRAGDDIAVELRILTSRRSDLVADRTRAIEP
NARPAAGILSALERAFDY
>Ps133360 Pogo-family transposase 
MPSSRRSYSITEKLSILAEYEAGVEGSGFHAVGLRHGVAASTIRGWWQHREKLRAASRDRQVATRTARRLTGGGRRPANS
ELEARLYEWVISRNRKGLRVKDSYIRLQARNIHRQLHGEDVVGFEASSGWLARFKARRNLVSRRQTTSRSLPADAPDVCR
LFIQSVHHLIAKHGIQPKNIINMDQVPRYLETEPKAAITTRGSREVLLRKGGSGHKRFTATFAITAEGEFLKPHLLFSKL
KNKPKCPPGVLVDVNRTGMWNDDLLLAHAEAVICSRKETQLYREPVLYLIDSYGCHVKLTDSKRLERCNIFVVLVPPNLT
NMLQPLDRSKYDAYISEALRDPMLQTKAGNPKVPRYDAVAQWTLDWVASKDPAEHLVNDDSERELVRVSAPDWYIPDNER
SSLFCCLSFGLDMSVPEYAEALTTYMATLVDLTGLLDDEYLVAVRKGLMAPGELEIYAASKMHGWNITLKTADEGSRLTS
SFVYAAENATKDVVLVRGGGYFAVEINGCLL
>Pi1146747215 7000000037415293 (Mariner_Tc1-element) [Phytophthora infestans]
MSTNQHSKLSLPTRFRRGTPARSKPPNLMHVARLNLHSQFYRASRRCLLSPRSSATHPRNTAGSSRPSTAAKTGAPEIRE
ALELWMEECCTYTLSTLRLLVREDFDVDISETTISHHLTGVLYSIKQTRVGPMTCNCEVNKQKRKKFAEALVKHQDEGAL
IIYFDETNYNLYVKRSRGRAKKGKRAIEKLPPSKWPNLQIQCAGSSAYGVVAYRNKRGSIKMQDNADFVKKLYKVVMESE
VYATEYTSKNIVVVFDNAPAHSRTKELMPAHDDLVLLRLGPYSPMCNPIENCFSSLKAHNNQYLALAREEILEPVLISDG
KPITKTEARMRILERAASVNMPKITQRMVQKMEVHAAKFVNAAIRFEDMVYDE
>Ps136140 IS4-like transposase [Phytophthora sojae] 3bp TSD + IRs.
MDEEGTLVLSQTVEGEEIAMLLMIELVANAPLSYRDRILVPDFRLDILSMPDGEAKDQFRFITSDLQRLVRYLKIPDPVI
TKEGVRATALEALAVCLRRMAFPQRWIDMAGMFGRAPSTLCHIFYFVVEHLDKTFTELLYFDAERIAKNLDRYCQEIAAK
TPDYIEGVWGFIDGTVRPICRPGIGQQAVYNGHKRVHAFKFQTVVAPDGMICHVYGPVDGRRHDIYMLRESGLMSLLEGN
DVFHNKLIYGDPAYGCTNVFCCPFKGCRIDAPQQEVNKAMSKVRVSVEWSYGEITRYFSYLDFKRQQQVAMTPVATLYKI
GVLFTNCITIARGKNNNSKYFNCPPPTFDEYFGTTC
>PITT_10716 mutator-like transposase [Phytophthora infestans] 
MPPSQAWSRVIQCRTEAEFVSYRWQVFCCSVVRGVRPLVCSICPGDHEMIERHLHCKSVTCENSVSCTKCPVRWKVRHCP
TASIWVIISNGKPHLRGDTECAVPPRPKVTPEMKAYIHRMDENAVPPRLIWSNLLRAPDIPKPALGYPSYAQVQRSVRYI
RWLQGSKNSIQRVKELVHSKAYVADIDPETAFVFGNVEDENGFPFVGNGEDEQPLILGITTMKLLRGIRALQRAEPFLIF
HLDATVKLSDLGYPVITCAFTDKRRVYHLGALFIVSQRTENEYFKAIGTFTRLFQTHTQTPLRIDAVMGDAEAAQLNALS
KIAVFNSCKYLMCFFHVLYNVRKRIRHLPDSTRAVVYRGILDMHYTLCDEDLISVWNQVMSDWERDFRLLDFVNYFYNQW
IASRFWRWQIYHSPGGFATTNNPCEVFNASIKRYTQRKAVDTRRLMIKLLTIVEDYSICAPTPATGSLPGPPQEAKRLAK
VLVSIRRIAVFRTRDESKVRIRYVGDTGRDNEDIANIAAIGDSWVVDIAPEVGLFSSAECLTDDEKKSASTFYRSAVKWS
VRRAHHVGMPPPGWLVSTSAFECGCAYYKKFLSCAHVICGRMAIGLGVPGVGGFHVKLKDRRIRRARDAKRKHAARSLLQ
SSDHAMETVFSCPVSDVSSDSSLSFDLLSASVQTFLREFTDDGVNLDGPVAANTYGGENNRMDVHTETSAAVFADSASGW
TQTQVGDEFLSADSIHEATSGSIQESTASSNISRIDISSLLSPIQPPDQQQHTVFPEEEISLRRQVGRPPLASPA
>aF23M2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
VVVKKNNGKWRVCVDFTDLNKACPKDCFPLPHIDRPIESTTGQEMLSFMDAFSGYNQIMMNPDDQEKTSFITERGTYYYK
VMPFGLKNVGATYQLLVNIMFKDLLGKTMEVYIDDMLVKTAFSASHLDHFQQCFDILNEFGMKLNPLKCTFAVPSREFLG
YIV
>aT3J11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIKEVQYPEWVANMVVVKKKNGKDRVZIDFTNLNKACPKDTFPLPHIDRLVESTAGNELLTFMDAFSGYNQIMVNP
DDQEKTSFTTNRGIYCYNVMPFGLKFRIKNVGTTYTQLVNMMFYDHLGKTMEVYIDDMLVKSLKKEDHIQHLKECFEILN
RYQMKLNPAKCTFGVPSGD
>aT24G3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LRISSITEAKYLDWLANPTZZKKKSGKWRVCVDFIDLNKACPKDSFSLPHIDRLVESTSGNKLLSFMDAFAGYNQIMMNP
EVQEKTAFYTEQGIFCYRVMPFELKNAGETYQRFVNKISALZIGKTMEVYIDDMLVKSLAEEEHVSHLRECFQQLNLYNV
ZLNLAKCRFGVRSGEFLGYLV
>T32A11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEAGIIYPISDSSWVSPANLVPKKGGVTVVKNEKDELIPTRTITGHRMCIDYRKLNAATRKDHFPLPFIDQMLERLANHK
YYCFLDGYSGFFQIPVHPYDQEKMTFTCPYGTFAYRRMPFGLCNAPATFQRGMMSIFTDMIENIMEVFMDDFLVYRSSFE
DCLENLYKVLARCEEKHLVLNWEKCHFMVHDGIGLGHRI
>T5M2/T17H1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LAKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPT
DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELF
AKLSKFSFWQRSVGFLGHVI
>aT15J14/F15A23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEVGRIREVKYPEWLANPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQILMNP
EDQEKTSFITECGTYYYKVMPFGLKNAGATYQRLVNRMFKDLLGKTMEVYIDDMLVKSTLSTSHFDHLQQCFDILNEFEM
KLNPSKCTFAVT
>F6H5-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
MAKGHIRESMSPCAVPVLLVPKKDGSWCMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCIFSKIDLKSGYHQIRMKEE
DESKTAFKTKHGLYEWLVMPFGLTNAPSTFRRLMNHILRAFIGHFVVVYFDDILGYSKSMAEHIDHLESVMKVLREEKLF
ANLKKCTFCTDNLVFLGFVV
>gi|12584303|gb|AAG52950.1| putative envelope protein (Endovir1-1) [Arabidopsis thaliana] (Ty1_Copia-family)
MVRTRGDSRRPTRAPANTRAVARTRSEARRAAPSAPATTPIVGRTRRDARRTAPTIISDDSDSSSDDAVPDPKAARSPVA
VPSKQAAEAPPPPSHAPDDSPAPVSDLPPKTSTAPPINDPAPDLLRNAFSSRGRLPYDPSDRCSIHRHHQAERDAADPSI
WTPPYEPLTIQFLTSQGVERYKDFKLRDPYEQRYVPRGPPEMRDMMKVIEDNHLLDTVAEIDPFVKEVIWEFYANFHIFN
EETKKSKVFVRGKMYEFSPQMINKTFRSPAIKWHAKAEFERVTMSKHALAKYLSDGKVVTWKDLRTPVMPTHLAGLYLIC
CINWIPSKNNSNVTVDRAKMLYLLNERIPFNFGKLVYDQVEKAARSPGQIQNILPFPNLIYRVLMFQRVITLENYEKPGP
HPKLFNPDVRGGIEHPKRRGEYLFGTSLPGDLRHVSTLLTTIATRIEGMISSLLLSVCFPC
>T7B9-3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
MEKGHIRESMIPCVVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMREG
DEWKTAFKSKHGLYEWLVMPFGLTNAPSTFMRLMNLGLRAFIGIFVVVYFDDILVYSKSLREHIEHLDYFLNVLRKEELY
ANLKKCTFCTDNLVFLGFVV
>aF28L21 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVQYPNWLVNTVMVKKKNGKDRVCIDFTDLNKACPKDSFPLPHVDRLVESTAGNELLSFMDAFSRYNQIMMNP
EDQEKTSFITDRGIYCYKVMPFGLKNARATYQRPVNKMFKEHLGKTMEVYIDDMLVKSLKKENHVKHLEEYFAILNQYQI
KLNPAKCTFGVRSGEFLGYIV
>MYM9 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
MERGHIGESMSPCDVPVLLVPKKDESWRMCVDCRAINNITVKYRHLIPRLDDMLDELHGSNIFSKVDLKSGYHQIRMKEG
DEWKTAFKTKQGLYEWZVMPFGLTNPSTFMRLMNHVLRAYIGHFIVVYFDDILVYSKSLGEHVEHLKMVLEVLRKEKLYA
NLKKCTFGTDNLVFLGFVV
>T29A4 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISNSTWVSRVYCIPKKGGMTVVKNENDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGSFPIPIHPNDQEKTTFTCPYGTFAYKRMLFGLCNAPTIFQRCMTFIFSDLIZEMVEVFMDDFSVCGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHEI
>F23H14-4 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDKGFIRPSSSPWGAPVLFVKKKDVSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPT
DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSWEAHQEHLRAVLERLREHELF
AKLSKCSFWQRSVGFLGHVI
>T24H24 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVKYPDWLANPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGHELLSFMDAFSGYNQILMHP
DDQEKTAFITDRGTYFYKVMPFGLKNGGATYQRLVNRMSADQLGKTMEVYIDDMLVKSAREKDHVPQLRECFKILNKFEM
KLNPEKCSFGVPSGEFLGYLV
>F14I23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGTPVLFVKKKDGSFRLCIDYQGLNRATVKNKYSLPRIDKLLDQLRGVTCFSKIDLTSGYHZIPIAEV
DIRKTAFRTRYVHFEFVVMPFGLTKAPTAFMRLMNSVFZEFLDEFEVIFVDDIQVYSKSPEEHEVHIRRVMEKLREZKLF
AKLSKCCFWQTEMGFLGHII
>T5N23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LESGIIQPSSSSFASPVVLVKKKDGSWRLCVDYRKVNGITVKNCFPIPLIEDLMDELGGAVIFSKFDLRAGYHQVRMVEK
DIPKTAFKTHSGHFEYLVMPFGLTNALATFQGLMNSVFQKFLRKFVLVFFDDILIYSKSKKEHLQHLKLVLEVMREHKLF
AKRSNCAFATSRVEYLGHFI
>T14K23-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIHPSTSPWGEPVLFVKKKDESFHLCIDCRGLNRVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQILIAEA
DIHKTAFRTRYGHFEFVVMPFGLTNAPATFMRLMNSMFQEFLDEFVIIFIDDILVYSKSLEEHEVDLRRVMEKLREQKLF
AKLSKCSFWQREMGFLGHIV
>F23H14-1-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKAGLIKEVQYPEWLANPVVVKKKNGKWRVCVDYTDLNRACPKDSYPLPHIDRLVEATSGNQLLSFMDAFSGYNQILMHK
DDCEKTAFITDRGTYCYIVMLFGLKNAGATYQRLVNEMFAELLGITMEVYIDDMLVKSLQATDHIKHLTACFDILDKYQM
KLNPTKCTFGVTSGEFLGYIV
>F9M8-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHCVPKKGGMMVVKNEKDELIPTRTITGHRMCIDYRKLNAPYRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKNTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLDHKI
>F23H6-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNAKDELIPTRTITRHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHP
YYCLLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRWLTSIFSDLIZEMVEVFMDDFSVYGSSFS
SCLLNLZRVLKRCAETNLVLNSEKCHFMVREGIVLGHEI
>Tma5-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LAAGTIQGSSSSYASPVVLVKKKDGSWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGAVVFSKIDLRASYHQVRMAPV
NIHZTAFKTHSGHCEYLVMPFGLTNAPANFQSLMNSVFKTFLRKFILVFFDDILIYNSSLEEHEQHLKLVFEVMRENKLY
AKRSKCAFAVSRVEYLGHFI
>F5M15 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHK
DDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGM
KLNPTKCTFGVTSGEFLGYVV
>Athila4-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLAKYP
YYCFLDGYSGFFQIPIHPNDQEKTTFRCPYGTFAYKRMPFGLCNAPATFRRCMTSIFSDLIEEMVEVFMDDFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKI
>GB:BAA92234 transposase (ISa-element) [Bacillus subtilis]
MDKFTRKTSFEQWFSPIFSTKLEELVESYQLNYYTKKLHIASFLKLFVFAQLNETESLRAVSETLFSDDLQKATHLEAIS
FSQLGRRLNQVPTEVFQQVFLDLVAQIHEKSHYEQRRETTTPLKIIDSSTLPLNLKNHKWAEFRKTKSGIKLHLRLVYAE
KGCSYPDKAVLTNAKEHDRGQLEVLVDDKECMYVFDRGYLDYERFDRMTDDGYFFVSRLRKNAVIRVIEPFKLPEDSLVF
SDEMVLIGTPQNRAENAFRLIKVLDSKGNELHLITNRFDLSADEIAELYKSRWAIELFFKWLKQHLNIKKFYAQSEQGVH
NQVYIAMIVYCLNVLAQLNTNSSRTYLQISRLLKAAPWKSAHLWLRKIVGKTVP
>GB:BAA83475 transposase (ISa-element) [Porphyromonas gingivalis]
MSTNISLFAQVIRLLPRPLIKKLSTEFQVDKHSKHFTSWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPS
KSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALNDWAKYTHTKGAVKLHTLLDFE
TLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQIL
VD
>GB:CAA35935 unknown peptide (AA 1-108) (ISa-element) [Shigella sonnei]
MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVRVRQHERDTGGGDGGLTTAERQRLKELEREN
RELRRSNDILRQASAYFAKAEFDRLWKK
>GB:AAC05650 transposase-related protein (ISa-element) [Leptospira interrogans]
MKGRRKYSPEFREQAVNRTLNGSFTIKEVAESLGVSYFVLRQWKAEHLKKKETEQPLPDKQLKESEELKRLRKENVRLKD
ENAILKKFAAMLSREQNPD
>GB:CAB62585 hypothetical protein (ISa-element) [Lactobacillus sakei]
MAIKYSNEFKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIKQADPNNTKVLSSNERALIKENKRLKEELDILKRAAVLM
AKS
>GB:AAC82816 ORF H0386 (ISa-element) ISH8 [Halobacterium sp. NRC-1]
MRRLTTLFPSEFLEDHAEELGVVERDRKLQIPAFVWAFVFGFAAGESRTLAGFRRCYNSTADETISPGGFYQRLTPTLAE
YLRDLVEHGLDEVAVPNAVDADIDRFRDVMIADGTVLRLHEFLSDQFEARHEEQAGAKLHLLHNATEQTIEQLDTANEKT
HDSTLFKTGPWLENRLMLFDLAYFKYRRFALIDENDGYFVSRLKQNANPLITGELREWRGRAIPLEGKQLRAVLDDLDRK
YIDVEVEVEFKRGPYNGTQSLDTKRFRVVGVRDEDADDYHLYMTNLARKEFFPADLAEIYRCRWEVELLFRELKTQYELD
EFDTSDEHVVRILLYAALLSLLVSRDLLDLVTEQADDELVFPTERWAATFRSHAQLILHELGEFLGYSPPPLLDRLIEDA
QKIHKQRPILQETLATTTQPRCEA
>GB:AAC16614 transposase (Mariner_Tc1-element) [Drosophila simulans]
MSSFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL
LDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWI
FFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNTARYQQQLINLNRALQRKRPEYQKR
QHKVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYQLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDE
FYWRGIHKLPERWEKCVASDGKYFE
>GB:AAC16618 transposase (Mariner_Tc1-element) [Drosophila simulans]
MSSFVPNKEQTRTVLIFCFHLKKTAAESHRILVEAFGEQVPTVKKCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL
LDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWI
FFVSPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNTARYQQQLINLNRALQRKRPEYQKR
QHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDE
FYWRGIHKLPERWEKCVASDGKYLE
>GB:AAC16613 transposase  (Mariner_Tc1-element) [Drosophila simulans]
MSSFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL
LDEDGAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWI
FFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNTARYQQQLINLNRALQRKRPEYQKR
QHGVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDE
FYWRGIHKLPERWEKCVASDGKYFE
>GB:BAA21371 transposase (ISa-element) [Deinococcus radiodurans]
MVETVTGHGLPFISRFPRNANLKYLYTGEHPRRRGRPKKFDGKVDFSDLQRFDLVSETSTERVWTQVVWSVQWAREVRAV
VIQQVGKKGQVTGYAVLFSTAVTMPAHEVIALYRSRFEIELIFRDAKQFLGGQDVQLRSQPGIEAHWNVVLLTLNLCRLE
ALRAAEGGQNLVFSLEDMKRRAYNALLAQVILSKLDLSARFEELEHLPSSPLNFGLKAA
>GB:AAC28262 transposase (Mariner_Tc1-element) [Drosophila teissieri]
MSSFVPNKEQTPTVLMFCFHLKKTAAESHRMLVEAFGEQVPTVKMCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL
LDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWI
FFVDPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGATVNTARYQQLINLNRALQRKRPEYQKRQ
HKVIFLHDKAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDGWFGAKDHEF
YWRGIHKLPERWEECVASDGKYFE
>GB:CAA58055 transposase (ISa-element) [Leuconostoc lactis]
MTSLSSQERTVIQTLLELNYSVRAIARFIKRSPSTVSIEIHQVTPYKAEIAHALALKKRHLRGRHDTLTPAIAVFLNHHI
GILKWSPETAAHVLGLPFKTIYNWLNAGRLKLSLADLPDKGIRQKRQSDGRRQVFVHGRSIETRPESVKARRTFGHFEVD
TMQSGKRRGDVLVTITERLSRQHSVRQVTGRNSQAVTPVLIRFFQGIKNAKSITVDRGREFARYNEIEQKLGIPVYFAHP
YSPEERGSNEILNRYVRRFIPKERKIETVSAKELDQINHWINARPMKTLNWQSPRKFFQQFTVFG
>gi|15724035|gb|AAL06418.1|AF378070_1 reverse transcriptase (Calypso) [Glycine max] (Gypsy_Ty3-family)
VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDYRKLNEATRKDHYPLPFMDQM
LKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSVFAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDF
SFFGASFGNCLANLEKVLQRCEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH
VGFYRRFIKDFTKV
>O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)
DAAPVFDDLLNFRADETQAEISTTCETLFVGSVFKNRKVLQQTMSLQPIKQCFCFKQPKSCPKTLKMVCVDETCPWHLTA
CVVKDSESFKITSYATTHTCNIDSRKNYNKHANYKLLGEVVRSRYSSTQGGPRAVDLPQLLLNDLNVRISYSTAWRAKEV
AV
>gi|15724050|gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) [Arabidopsis thaliana] (Gypsy_Ty3-family)
VRKEVLKLLDAGVIYPISDRTWVSPVHCVPKKGGMTVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQM
LERLANHPYYCLLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDF
SVYGPSFSSCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLQPPKTVKDIRSFLGH
AGFYRRFIKDFTKV
>gi|15724020|gb|AAL06416.1|AF378057_1 reverse transcriptase [Sorghum bicolor] (Gypsy_Ty3-family)
VRKEVLKLLHAGIIYPVPHSEWVSPVQVVPKKGGMTVIINEKNELIPQRTVTGWQMCIDYRKLNKATRKDHFPLPFIDEM
LERLANHSFFCFLDGYSGYHQIPIHPDDQSKTTFTCPYGTYAYRRMSFGLCNAPASFQRCMMSIFSDMIEEIMEVFMDDF
SVYGKAFDSCLENLDKVLQSCEEKHLILNWEKCHFMVREGIVLGHLVSERGIEVDKAEIEVIEQLPPPVNIKGIRSFLGH
AGFYRRFIKDFTKV
>gi|15723979|gb|AAL06406.1|AF378026_1 reverse transcriptase [Avena sativa] (Gypsy_Ty3-family)
KEVFKLLDVGIIYPIADSEWVSLVHCVPKKGGITVVPNDNDELIPQRIVVGYRMCIDFRKVNKVTKKDHYPLPFIDQMLE
RLSKKTHFCFLDGYSSFSQIAVKQQDQEKTTFTCPYGTFAYRRMPIGLCNAPATFQRCMSAIFHGFCEEIVEVFMDDFSV
YGTSFDNCLHNLDKVLQRCEETNIVLNWEKFHFMVNEGIVLGHKVSKRGIEVDRAKVEAIEKMPCPRDIKGIRSILGHAG
FYRRFIKDFTKV
>Q9SHM9 /139-265 Pfam PF03108 MuDR family transposase (MuDr-element domain)
DIPPLFEDIEYEIENTPYLDIEDDGKGIYKGKVYASKEDCQIGLAIYAIKNMFHFKQTRTNCSDEKCDWRILATLMKGTG
YFEIKKASLQHTYSLETRGQFMQKATSKVIASVFKANKCWRARKSAL
>GB:CAA93760 unknown restless (hAT-element) [Tolypocladium inflatum]
MDADLQDLFWGQVGSETSLTLHSSPCPSRRSTQSSSLSASAPQTPPRKILNLDENPTPTEIAHFPFELFNDELRAATPPR
TKGAKVAWWWVKGFRMRLKSNDKKLRWVCRLCVRRKCRTVSHFSYESNGSANIIKHLRDIHGIKEGKTRRRLAALRL
>GB:CAA39913 putative coding sequence (ISa-element) [Agrobacterium tumefaciens]
MKAVADTLGVSRSNLIERLKGRSKPRGPYNKAEDAELLPAIRRLVDQRPTYGYRRIAALLNRERRAADQPVVNAKRVHRI
MGNHAMLLEKHTAVRKGRLHDGKVMVMRSNLRWCSDGLEFACWNGEVIRLAFIIDAFDREIIAWTAVANAGISGSDVRDM
MLEAVEKRFHATRAPHAIEHLSDNGSAYTARDTRLFAQALNLTPCFTPVASPQSNGMSEAFVKTLKRDYIRISALPDAQT
ALRLIDGWIEDYNEIHPHSALKMASPRQFIRAKSI
>GB:AAA66268 mosaic protein ORF3 (CACTA-element) [Zea mays]
MFRMDSSGRRSRSRRSRGSSGAPNMFEGTTTSRSRQEQLLASLEQMRGSSGPSNTEGTTSRAADLVAPTMAPTAEAAVDA
EAAVDAEAEEAAAELDDGEETSGADASTEEAATQAPPRRAIRYRRSLTLKPSKPFDQRRVIEPKGTRAWKEVSWDGTGHR
TPILTELGICLRFAYPAMVTEGGQEIAAHYWAHWDLKPYGNDGTHTSKVWDLFWGQFRVCDPYTLDDSYVREVFNGSADR
AVKGMMYKARLRAVTVYQKRQGNYCDANMAKEIHLTAQQYKESEVDWLSHHSDAWAWMCEYWASEEFLAISNRNRMNRLS
KPGVHFFGADGHVGKAARMAARNGVEPTLLQVFVEGHKGPDPNHPEILNDSNATEKLARYIDNVREKNGPDTDWLTGEFD
TEAAYKAGGGVPHGRLAIGDGVVPRRSYTRRSNFSAGSNRPRRPSAREGELLEKMTQMEESMAQYKQQVQQQMQQMQNWM
LHQMYGGAGTQFGMPPFQQPPIITHPVSGQSSDRSTAAADGSQGSATSVQDQLMPLGVIGGQMMPWAPRQPGIWPPMQTQ
MPPPMPWGFPPRGQSQSPGLPSHSPGSGSGSHHASPPPDQSTFMDLLMNTSGGGSNDPPTE
>O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)
TKRTKTMEMIGSTGSLTDLKLELSTLTLAVGQQYRSKFELEYRLKLLAIRDGFDFDVPTSNKTTVYYECWVDRCRWRVRA
SRQGDNPNFYVYIYDTEHTCSVTERSDRSRQTTPFVLGVLYRDYLGDMSYSKSYKTLRFAR
>O81510 /24-166 Pfam PF03108 MuDR family transposase (MuDr-element domain)
EEDTNEKKDEDEMSRFDCFDDTDGASDGDEESSVCTTYLKIKTSVDLIMEMVTICLNYGKVHQDDNKFIKFDFNVGRSTL
ELVRATPTGVGSCFEIRVYISDHTCSVTARSNRARQATHAILGQIYKESVNYWMSHRTLKFAR
>Pi_model.supercont1.11.4.1 1475 novel transposase Pi-A IRs plus 9 bp TSD
MIDIFSRFPEVLIIDATHGTNASKYKIFSFMAHDIFGKGQYVQHAILQNERSETLFSACEEFKKQNPSWTKLQCVIVDKD
FTEIGVLQTAIPDVRILLCQFHVVKYLREEIACADYGFSAWQKKQLRAVVNLLVYAKTEREYEKHRRYMTRLTCIGTSRG
TATARSGAIVESGAESVAVGGSVESVAALSTAVDTEQVALNHPFETYFAKNWDGCRDMWCSFTRQSAVTLGNNTNNRLKA
SWKHMKEIVNSSVVLDECLASIIFYQTRSEQLLYNRATNISHVHHEEYDKEMNVVANLVSKHVCELIHEQYVYATGPASY
SFYEAMPGMIFIKNEKDAEGSLDEPRAEYTIAKSTWECSCLFASTRLLPCRHVFYVRQQLKLETIIPTQCFHPRWLLSSM
NDTRPPLETERNGCSVTRIASLPKLPWDSNRKFRQANSFATAITEAVSTLGMAEYRVAIQALAQVSTMFTEKKFE
>Pi_model.supercont1.11.21.1 1491 novel transposase Pi-A IRs plus 9 bp TSD
MRELFHYFPEVLLIDATHGTNTSKYKVFSFMIHDAFGKGQFVQHSIMQNEMASTLLTAVEQFRTANPDWPKLQCVVVDKD
FTEIGVLRQAFPGVIVLLCQFHVIKYLREQLASSVYGLSQWQKSQLRSLIPSLVYAKSEHEFEKHRNYMRHLLLIGSHPL
SRATATMPDTLLGSDGPEGFRIDSDGLQMDVDGDQATSSLTTSLSTSTPNVWAETNPTALPFELYFQKNWDKCKPMWCAF
ERQNVVTLGNNTNNRLESSWKQLKDTMNSHMGVDECVASIICYQTRSEQSFRAQVVKIGMVHNARYDREMALVANLVSEH
ACELIFEQYSYALGACARYTFYEAVPGIVFIKNEAVDDEVLDEPGVEYSVNKQTWQCSCLFMSTRLLPCRHVYYLRKALK
MEMIIPTQILPSRWLLSSLNSETTLECLTGKYFAVRKALRDQDRPWDSNRKFREAQAVAGSIADTMSGMGMAQYRAAIKS
LEEVARLFKRG
>Pi_model.supercont1.15.1.1 1490 novel transposase Pi-A IRs plus 9 bp TSD
MRYLYDRFPEVLLIDATHGTNVPKYKVFSLMIHDTFGKGQYVQHALVQNERKETLEAAIEEFKLNNPATKRLQCVIIDKD
FTEMSVLEAAFPGVKILLCQFHVIKYLSEEIAKADEYGFNPWQKEQLRGIVSLLVYAKSEREYNKHRRYMHQVITVGGVE
RDSAPVGHTTDSVGHAADAVGHRVEPVGCGSGLVEREDEEEEDHLEARLHPFESYFKRNWDNCRGKWCSYKRQNAVTLGN
NTNNCLEASWKQIKDIVNSFMQLDECIASLMYYQSLAEKDFVNRMFKIGVIHHASYDKELHYVSNLVSEHACNLIFEQYA
YAVGRATYSFYEGIPGVMFIKNTTHDDDALDEPNQEYNVDTGNWRCSCMFMSTRLLPCRHVLYLRKALKKETIIPAQLHP
RWLLSTLRASFTVPTIPDKAFRIRRIVRPEPNAWDANRKFREANQVANAITSTMSSLGMREYRDALRVLNTVAELFKHRH
FHEIDRLVSD
>Pi_model.supercont1.5.3.1 1604 novel transposase Pi-A IRs plus 9 bp TSD
LRSVYKQFPEVLLIDATHGTNRSKYKVFSFMAHDTFGKGQFVQHALLQNERWPTLLTALEEFKSNNPAWTKLRCVLIDKD
FTELSVLKTAFPDVTTLLCQFHVLKYLREEIASADYGCNTWEKHQLRGLMNLLVYAKTEKEYMKHFRYMLHVCGMGRPRS
GQLTSDPVGQNLAPVGQNLAPVGQNIVAVGQNVATEARNHTTSESERCETTNTIVEPFESVRHPFVAYFIKNWDKCRELW
CAHKRQNTVTLGNNTNNRLEASWKQLKEWVNSFMAVDECIASIMYYQSLQERRFMDEVYKKVNVQHVGYDREMTLVANLV
SEHTCELIHDQYCYALDRASYAFSERAPGVYFVKSTSPDEDALDEVDAEYTITTHDWTCSCLFMSTRLLPCRHVFFLRRA
LNKENVIPTQLVHQRWVLSSVRSSIEFENASDAPTTVESFAVRRVLVTDERPWDSNRKYREALPNASEICDSMAGLGMVQ
YREAMTYLKAVAHRFKVGDFSSSIKMPTISEGTRDDVFDSDTVGEVEVEDPELSQPSTQITPQSGESGTQSGESDIQSGE
SGSVSAELICQTGVETSASHATLQPVGNDTFDVASPPRSRGRPK
>Pi_model.supercont1.6.8.1 1637 novel transposase Pi-A IRs plus 9 bp TSD
MRTLFDQFPEVLMIEATHGTNRSKYKGFLFMAHDTFGKGQFVQHALLQNERYETLLTAIEEFKANNPAWSRLQCVLVEKD
FTELSVLEKAFPGVTVLLCQFHVLKYLREEIASADYGFSRSQKEQLGGVVSLLVYAKTEAEYDKRFQYMVHLASIGYAGP
VANDRSGIVVGVGSGSVGVESGSVGVESGSVGVEVTDHELEDISSRIDEHPFVYFRKNWDSCRELWCVHRRQSTVTLGNN
TNNRLEASWKQLKEWVDSFMGVDECIASTMYYQTLQERLFIAEVYKNVTVQHPDYDSEMTLVANIVSEHACELIFGQYSY
AIGSASYTFYEGCPDVYFIKSISTADDALDEMNAEYSVTKREWMCSCLFMCTRLLPCRHVFYLRKALCQETVIFTLLLNR
RWLLSTVRAAIENTSVVSDTAEPKSFEVRNVISSQARPWYSNRKYREALQFASQICDTMAGLSMTQYKEAMQYLQSVTGR
FKRGKFEDPGVPILPPAESERHGSTSNSRDDALSPPLLTGHDPTARPTHHVSAELLTRHADTANVSHVSPTASESDHATS
CNSVETTQVADLSGQSGSIGGISGPVEEESGPVGEELDPVGEELDTVGDVEFSTLPPATEDTPFVIASPLRSRGRPR
>Pi_model.supercont1.8.9.1 1434 novel transposase Pi-A IRs plus 9 bp TSD
MRSMFGHFPEVLLIDATHDTNSSNYKLFSFMIHDAMGKGQHVQHCLVENERKETLRLACSQFKECNPCYDAVAVIIIDKD
FTELPLLEEEFPGVRILICHFHAVKALQEEVSKDAYNLDAWTKKEMKRLIQLVVSAPTETAYDKIISTMKVVLRVDEKVK
LWFKYFDANWTSCKEKWSSVFRGNTPHMGNQTNNRLSSSWQKLKTLVNRSTALDDCVVSILFWQTINEKMWARNVKRIGV
YMNVEYDAEMNLLLNTVSRHAVELVKQQYDFALLPTTEYRHYPMGPYVMMQYSAGKEDDVLDEYMMNPSGWTCSCIFRVT
RLLPCRHIIYYRNVTNCNSLVPESIIHPRWLVKSYRRLRQGQYLEDDELTSPYEVRTVQRPCIGRIKTEREKFNELFGLG
RQIADVGSRWGTRAHETLSKAMMQFLDNVKAGQF
>Pi_model.supercont1.3.12.1 1556 (mutator-like) mutator-like transposase [Phytophthora infestans]
LVETMKASKITKSQLTACNVCNLAAPHKMRVRERCCRDLACKEVSVGVPCGWYGKTQECQELHLITVAERGEHLTPRRGI
EPARMSGAMKAFATDLAAQALKPSRIRNGMMGRFALDKETLPSLQVVQRFVNYYTRSHLRNNDYIDEATKDIWDAGFTGK
EHADSPFTFSWRLTPDGKPWVGRGTDKDPFLVGISTKNLLQKVNRDPDSFILHMDATFKLSQAWYPVFVVGISDSNRSFH
LLAIFISSQRKEEHYTKALLALRRVYLQVVEQPMRVSYVMGDADDAQWNAVQTVFGEDNSLSTLMCYFHVAAKVFKRTRH
LPTELGHVVMQGLQDMHFTRDAYDYLETKQKVLSQWGQLLELETFVAYFTKQWLTGKFEQWQCFRSPRGLATTNNPAEQF
NRSLKRDYTLHRRLKMGVLLVRMSACCKNESFNTRAFAVTTSPSTTLKRRMHELRRQGIIYQHLPSRNSISFLLNETEPS
TDVAHVFQQSTTRVYDPELKRTREALPVTAQLSYHTDRMELKGMPPAGWAIDAATGRCPCLYNMKYAVCVHSLLAM
>Pi_model.supercont1.27.9.1 1608 (mutator-like) mutator-like transposase [Phytophthora infestans]
VLARFTSFDIYKSQAMGCTICPGADHKMRYRLLECSSTFCAEASPLKCSWRGKMVTCLDNDHSSIFEFGQHSSPAATPAS
KKLTLRHKAFCRDLVKQRLRPIRIRHALARKFGTPLEELPALKTVQNFVNHYSRTQMENHDRVQELSAWVRDHAYTGSEG
MTEPFTFAWHMDNQGKPIIGNGSDKQPFLVGISTKALLLRLSVPPESFILHLDGTYKTNQSDYPVLVVGVSDRSRRFHLV
ALFVMSQETQPMFQAALMALCRVYRWVTDKHLSVYYAMADADRAQYNALAAVFGDNLKYQFLMCFFHVMKHIQEHVKLLS
SGAQARVLRELYDLHFARSYSEYIGMLRPILSGWMRDPTLVPFAQYIHGQWLTGPFMAWQVFMTPSGFASTNNPAETFNA
LFKRDYTLRRRLKMDTLLRELSACCRDQSSSAKAFEFTVCPAPTLARRVSELVREKLLGVGEDQDLNALRAGACCILRVI
SLPAPRVQVAPNNRSEEAIAVTAQMGVNYARKEFEGEPSDGWPVDVLRQWSPCRYWFAFGACIHVLFALRVTAHVDSSGR
EVLINRRK
>Pi_model.supercont1.95.1.1 1604 (mutator-like) mutator-like transposase [Phytophthora infestans]
IIQCLKAFKIANSQAIFCTLCAVPTPHLMRYKILKCRCTQCKQAAPYATCPWRAKMLVCLDRKVVSLFESGEHVTRAIPP
HSRTLTTAQKDFSKQMTRAGMKPARIRTAMLLQFGLRPSELPALQKVQNVVCYYRRTKLGGSDTAATIVAAMQKLAFDGS
EEEHEPFTFSWDLDSEGKLVVGNGSDENPFLVGFSTKALLRQASQDPATFIFHVDATYKTNQVGYPVLVIGITDAARTFH
LLALFVTSQQQEGHYAKAFAALRWIYSKKLGEPLHISYLMGDADAAQYNAAAAVFGSDSKHVHLMCFYHVLAKVIDRLKG
LPYGVRDSVLRDIYDLHYSRSADDFATVSKATEARWLKLPMLEAFHRYFQRVWLNDRFRHWQCYSTPTAFATTNNPVEQF
NRALKRDYTAHRLLKMGELLQQLAACCRQRAIDRRPFALTPVASKELLARVKALRSQQLLREYVAPRMSLDFLMVNSSTD
ILHVLYTAPERAYNPATNSLQEALQISAQVGVNTSRKEAEDQPKTGWPVNLLTQTCPCSYHFKYGNCVHRLFAMQERDRA
NCNGEEVLVNRRA
>Pi_model.supercont1.73.2.1 1413 novel transposase Pi-A IRs plus 9 bp TSD
MKRLFKAFPEVVMVDSTHSTNVNRYKLFSFVAHDVFGKGQYVHHALVESEHKVNLRRVVEIFKANNPEWTKIRVIMTDKA
VHEKEVLQEMFPDARQLLCQWHVITWLKKQVTRLAPAVKKEMKSLVRLLVYATSIKEYEDARGAMLQQLGGDTRHQLYRT
FMENWDNSQEKWVSYQRGNVPHLTNNTNNRIESKWGKIKDVINDSFTIDQLLSTLITLQEYAEEQYLAEYHKVGSRPSRC
DEDAELSSLALHVSTFAFDLVASQHALATGPGADYQVEVVAQGTARVTSPGSGQVHVVDTQTNSCDCIFMKTCILPCRHV
MFVRSTCNFETMIPPMRSFPARWIVHSSVDNIGDGEVLSGGMKQVTCPALPKEKALNSPDMYCKAKEVTDKIIDRMVLQS
TPTYRVALRWLED
>Pi_model.supercont1.76.2.1 1579 (mutator-like) mutator-like transposase [Phytophthora infestans]
LLDSGKATRVTKANMTSCTICADPIKHTMKYQLLRCKSKACQIAGSGVSCGWRGKFLTCTVTRMMDLYEIGNHFSVARSP
REAGLTRQQKLFCQELVSYRLKPVRIWSALRKKYGLEGERLPRLRAIQNFVSYYFKTQLGYNDEHEDITTAVRDLAYKTS
KGDSAPITFTYSKTTDGDLIVGDGSDEEPFIVGLTTRNLLRLMDRDPGTFIFHIDATFKLSQVGYPVLVMGISDRARKFH
LVAFCIISHRVESVYAMALLAFRSIYAEVIGKQVRKKFVMGDADDGQLNALEQVFRFDSDFVFLMCFFHVMKKVQEKTRH
LPDSVANNVLAQIYDMHFSATLGELAQVTQFYLGQWSSRSDIAPFAAYFTKQWLSTQYSKWQCCYLEPGYATTNNPVEQF
NRIIKRDYSLRARLKMGMLIIVLSESCTNESQEAPLFHLNPEPTTSRLPRAKQLGSDKLLQANPQPTGCPNSNLIRVVSQ
PAPWFYIPSKKRTEEYLAVTAQMGWNYARMEYMGQPMEGWLADVSSGWCQCKYWRKFGSCIHLLDARLASHRVNSQGRRI
LVNR
>Pi_model.supercont1.42.2.1 1417 novel transposase Pi-A IRs plus 9 bp TSD
MRRMARLFPEVVCIDATHGTNINRYRLFSFMVTGKFGCGAFAQQSLINGETEQNMKNAISALKIYNECWKEIQVIVIDKD
FTELSTLEAEFPEASIILCHFHVIDYLKREISKREYGFTDFEKLHLKNFITIMVRATTEELFDHYLNALKELCRGKLAFV
EYLETNWLSCKDRWCTFRRGELPHLDNNTNNRLEASWGAAKDVLSRHMPMDECIETLLFLQQAAEDSYKIKTTRIGHRVN
HGYDREMKMLARIATHHACNLVEEQYKACQKAEYTVVADAVVADGLTSTFQTLRSKVTQQDYAVNVDTNTCSCVFNQTQM
LPCRHIIFLRLQQSKSTAITCENIPPRWCLLEEAEDADLRPVEVSSFAIADVPGVKSSKVISHNAKYKNAFTVCQRIAEV
VADKGTTDYSRWLSHLE
>Q25438_MUSDO/523-604 (hAT) hAT dimerisation domain, hATC (PF05699)
EFEFYRKEIVILSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFLNS
FY
>P52K_HUMAN/634-729 (hAT) hAT dimerisation domain, hATC (PF05699)
NPDTLSAELHCWRIKWKHRGKDIELPSTIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENGRKRLKAYLRNTLT
DQRSSNLALLNINFDI
>Q9LH75_ARATH/568-650 (hAT) hAT dimerisation domain, hATC (PF05699)
DLDKYLSEPIFPRSGEFNILNYWKVHTPRYPILSLLARDILGTPMSICAPDSTFNSGTPVISDSQSSLNPDIRQALFCAH
DWL
>Q9XIC2_ARATH/147-231 (hAT) hAT dimerisation domain, hATC (PF05699)
ELDIYLGEPTLDMAAFRHFNVLAYWKDNSCRFKELSSMACDVLSIPITTVASESSFSIGSGVLSKYRSSLLPENIQALIC
TRNWL
>Q9M3F0_ARATH/539-625 (hAT) hAT dimerisation domain, hATC (PF05699)
ELDVYLKEKVENPKTIIGLEWEVLSWWKLNCGRFPVLSAITKDVLAMQVSSVASESAFSNSGRVIEPHRSCLTHYMVKVL
LCTEQWM
>Q9ZWT4_IPOPU/691-785 (hAT) hAT dimerisation domain, hATC (PF05699)
QLRVQLEHFEHVQQLPDFRTLESISDLCRWLVKTRKSNIYPLVFRVVTLVLTLPVSTATTERSFSAMNIVKTTLRNKMED
EFLSDCLLVYIEKQI
>Pi_novelB_transposase consensus sequence for a novel transposase, IRs and 9 bp TSD [Phytophthora infestans]
MSRAERNKRLKKTKKGEDDSQLVPEGFDPYQRTYICTHGWKKRKSRSEGSRPRQHIRLTDCPFRFVVQWNLARGELQVKN
GFHNHQVSPAAFATYPASRGVADPLVGARVDGMLAVGAKRSRIYDYLLEHDQNVIQVDVDNLVRDHASSISSLDDNDATA
REIALFAAADPENVSSVAETDAGETGVISLASAHMRRIYGRFSEVLLVDCSHKTNR
>PITG_04016.gag  (gypsy gag) gag protein of gypsy element [Phytophthora infestans]
MSQIPYFRVRTQGGEDPTRSDLDPGYGMVDAVGLELLWSDEDHNLSPQFAQCLPALKNRNYIGRTSLAKSYEWHTGGTSG
LGDEVEEADIGEEADMGAGADVGAEAYVVAEADVGAEADGCGRESLSWNGGRGGVERSGCGRNGDSGSTECVNGEESTRG
PADEGCPSVRNGERAKQGGERAGPTRFVSDYSKRRMCRRLGLHYGTQKASPRQGDDARRSAGDGDGEGSTKNRQEGATQA
ESVSERTVLRLEAANDGVADRTVSQSTVDAMAATIGELRAMVTRLHQDPSDAGHDERQSERQRTREEPRRRSSGRTRRQR
RHDSGSDDSEEEGEQRRRSTARRSARARSSGSPGGDDSSDDSGGALSGDSSSSSSESESSSDDSSESDDSGSQSDPDEGS
RQLRRSHRRREHRQRHERQERRGQWEPAKRSVKDLELPTYTPSPKVSVSTWIDRVYLALKGAEESGRGQWTDRALYFILG
NKLMENAARRWVNMDRRLPGSKRTWSYLKKLLQRRYGERLDKSAAEWRVNGRRMAPGETYADYAAVLRDLVGKNKVSERV
LLAQFYRCLDKTTKKLVQQRPKPRTLERAVAKATKIDDPMGNVAQGMMNIGQAWATAPCPYIIPMAGTMGQTMVVPEIGG
AGLPSTMGHGTESADGEVGSMALFTNPQGVWNAYSGTWDVPPGHTWNGKYWEASKRSQRNLQQPVGKKTERKGRRQRERD
SNDEESDGVPVKKKLKAAVRLAKGQDGDPTAAGALRGGDTVMCFGCKQPGHIRLHCPNPPKCFACGEPGHFARDCTNSEA
KSRNDEYMKGRTGAEKPSEN
>Pi_fam_41.trim  novel transposase core consensus sequence weak IR + 8 bp TSD [Phytophthora infestans]
MGRDSAEIRLKDMLHALRQLDGSDVLVIQDQMDVTCGVMQTKVQKLMFERWGETLAMDFTHGTNNLGYHLGTLVVTTATG
RGFPVFDFICLNEQALTISTILDYFKEKNSGWKHIQSVVIDKDFVEW
>Pi_fam_55 (piggyBac) piggyBac transposase core consensus sequence [Phytophthora infestans]
MSFNPVTEIKELWSQKPFMGQSDFVATMARNRFEHIRARFQVHAPGSVPVERREQDPLWHSRRLMSQIQEKFAAIAVPVG
AVSLDENTVRTKARSSAKTFMPSKPDKYGVRFYAVVGWESLYAYSVWDNGSGNRTQTTPADRYVDVFPALRSALFRTLER
EDVPIKRKDASALWIAMCGHLTKTYPAPNQHRLLVDNFYTRHLALFTDGELLGTVRIGLQGKWMAERLEASKGRIDHAER
GSWELLAALDVPDWEKQQEKHKQPTYVPPMTTAINAGYIVFRDKKTVVFYTNDLAGTPSQDVLLGHSQEAIQLCRGLAPL
RRWTGDQVMHRKTFQVPAMIVAYNLFMNGVDRVDQLRSTNPIRRKERRLSMSILTWALDLALINAFALFRKVAGDAAARV
TLREFKRRVAQKLTVQRQKERPQPIEDVVGADSPHAITPNSKKDSKGKLTCYLCSLRGFKRKALFGCTGCHRGFHVSCYS
AFHFRDALTSDTPNVRSALYAVCAGDTLKKNKTITYLNQLELP
>PITT_21436 novel transposaseF2  IRs + 9bp TSD
MTRRRPPRGANSPSPLNTSLVESSRRRGRTRFSPTSRPSRPYRGTSTSDVAVTDTSMHSSDVASTLPATSIRGEAQESPS
PSLTIESMSTQPPTSSSANPTSSPHTQSPRSLSPTTTELPQSTASSVRSQVVSKPRDGRTKVYYQGYAFTRANATVVKIT
YRCSSYRKNCRAQFAYYADSASFDFGNMEPHTCRAILGLVGSETGSGDHCIDVSEAVMDEVDKLAAKTTMTQKEIWTGIV
QKFYMLDGPPVRGVSKQVVENRVQNARGTRAGGPTSLIEKPPLSKVKGSHQGFFQFQYSWHDAIKAQKDPVGIDRIIGWA
HPALLSLLCFENLSWYIDGTFRCAPNHYKQCVTIMVYDQSSKLYVPVVHVLTTSMTKKSYLKLLQCVQDSVGSKLVPKDV
VCDFEGALIGAMCAFFPDIRIIGCLFHFKQACSRKLKRYGIPKLEAKVAMSPSVFDVLTVIDPSKIAVQGIAWVKAKIRK
TCETKQLVYSRQKWRIFWAYFQRTWMDTFPPTFWNVYGINRDIVSRTNNPLERFHRELNKRFRPHPSMKQFATTLEILAR
EYVLQRNAIISGIAVPPVRVRFELPRAPRLPSVAAIEDSASSSDSEGQVDDVDVTSDPYSTDVSSTSEENAVLEEADADY
EQDNSFEYEGVV
>model.supercont1.129.2.1 (piggyBac) piggyBac transposase [P. infestans]
TVSGVLFYFMQPRLWEDIAEASNEYFDKKIDERVEGQYTKQKQRGKKIPGFKKSTRDAIKAALLSTPPITARELCVFVGL
LFARTIAPNKEKLENIWKTTDEGGIPRGRFGIFMPRDCFMHISRNLHFSSNNDPRAATDRAWKLRPVIDALQQQFKAGYI
PPPVMAFDEAMLPSRSTFNRMRVYMKDKPHKWGTKLFMLCCSASAYCLRFEVYCGKRQTDRSSSSKDTSCGPAAVIRNLR
QVFGARETIEKCLVVTDRLYTSPTLSIQLLAMGLYSIGTVMTNRRGFCKEIIVKKKKRPADVHRGTYAVAESTLVPSMKA
VCWWDNRPVHLLCAGGSTEQDRVVRRAKSGEQVEVACPRVLKHYQTFMGGVDVHDQLRLQRYSLQLALKYKKYYKSLFLG
FIDLATVNAFIVYNRRRAIDGKPKLSHVQFLKQLHLELTQ
>7000001773487428 (helitron ORF) [Phytophthora infestans]
MVRITREELDDRVQRARSENASQSHEESRKDRQLRKQRLRTAEARYRKAIQELEQLELVETPAPTESGQMRVTGPAVESE
EKTEEDDPAEHQRRFEEDAHCEHPVDNARGFQIGASGNADDRAAATRARDAERTRARRAAMTSSQKLRTRAKDAERKRIR
RANRSDSRVILDRGRDAELARVRRDRMAPEDLAAHQAYYRDAQSNHRATRTEEDSQNARIRDAVGHDSRREGMSDAQRQA
ERDQNTDAHRYRRNGMSDEQRHAERHVNAAQRRDFREGMTDEQRQAERDQNTAARRDFRGGMTDEQRQTERDQNTAARRD
HRGRMTDVQRQVGRDENTAARRDHRGRMTDVQRQVDRDENTAARRDHRGGMTDEQRQVDRDENTAVRRDHRGGMTDEQRQ
AEHERDAAAHRARRDAMTEEQRDQRKEQERFRRRSRQYKKGLAYHDSFDPSTVAGGRHYFTRYTDDNGENERVCHYCNAW
KFPQETDGCCCRNGLVFVPSSRTAPDALLSLFENPTFMRSIRAYNNVFAFTSMGASRSRPLNVDESVTRNGVYNFRVQGS
VCHRLGSLLPPTFGRSMYAQVYFNDPDMDARVRSRMNMTQGLDRAVMETIDQMMVAHNPYTQEFINARRFLIDRGWDAYA
AAIREHERRRAAGEDVDDHDPSLALSNFLPEGDHLQLRLHVTRNANPGTHNTPTASEVAAVVIDTNAAEHRDIILHTTGG
GFKRIFETSVTYDPLQYPLLFPYGDNGWTYDIPYVGNPVDRHGDPLTMSVREYEAYLLYDRTVSNSLILRGGRLTQQYCV
DQWAKCEQERLRFIKKNQLQYRLETLQGLTDALRGESVEIHRMAADDEAAIRRTRRGDNTEQESAEPDAGEVGRKIIIPP
KFTGGPRYMYQRFLDAMAIVRETGAPNLFITMTCNPNWPEIKENLRRGEKASDRPDIVARVFMEKLKALNKDLDEGVLGI
QAARVHVVEYQKRGLPHAHILLILRPEDKPTTKEDVDKLVSSELPDKEKYPELYDTVISNMLHGPCGQQNPNCPCMKNGR
CSKKFPKALAAETVMTPDKYPTYKRGRRPDGILCHKGKVWDNATINQWVVPYNPFLSQKYNCHINVEVCATNKAIKYIYK
YVYKGSDMTTITIEGEEIRASEILQYLLGRYISPVEACMRLFMHPTQGSTHSVVTLPIHLERMSMVAYRDQATTPQLHNL
INRGDRSMLTEFFKLCARNPEATANLLYKDVPRKYRWTEHKTWEPYKKYVASLGRLVHVSPQDPERFYLRLLLCNRRSPK
SFADLRTVDGTEHPTYQQAALALGYLENDDEWIHCLREAAEVKMPYQLRQLFGIILVYSMPGNAKDLWDRFKKDMSEDYA
RSIEVRDADLHNVREEEVRLRMAEYKSLKNLADYLVSNQKSLDMYGLPLLADYDDVSAQVDDPDSESVDVVQQEIDAYPL
NELEHVAEQADHLNSNQRDIFDQVIAAVSRPVGGEKLFFLDGPGGTGKSFLLEQILAHVRMQRKVAIAVASSGIAATLLT
GGHTAHSTFRIPLKLTETSTCSLSWQSQKAELIRSASLIIWDEAPMMNRACFEAVDRSLRDIMKNELEPFGGKVMVFSGD
HRQILPVLKNATRAETIQACFKSSPLWEHLRQVRLTENMRVRTAPDAASAAELAEFSEFLLQIGEGRYPVNHEIGDGDIC
LPRDMCIIPERRVQQITSDEEDADMEPPPSFRLLPPADEEHERDLDEVEEDRRVRNVNALIDAVYPGVDTENLPDEYFVE
RAILAPTNASVRRINDMVAERLSGETKEYLSVDSLEGVADTNMFEQEFLNSLNFSGIPPHRIVLKVGTPIIMIRNLNSDA
GLCNGTRLRVVSLRERSIEASIMSGPFKGKKVFIPRIVFYSEDDDKEFPFKLKRKQFPVVPAFAMTINKAQGQSIHHVGI
YLESPVFAHGQLYVALSRVTSRKAIKIAVDPEAIDEDGSVHTNNIVYREIFGTRTW
>gi|151933496|gb|ABS18391.1|  (piggyBac) piggyBac transposase [Helicoverpa armigera]
DPLLCFQLFITDEIIHEIVKWTNVEIIVKRQNLKDISASYRDTNTMEIWALVGILTLTAVMKDNHLSTDELFDATFSGTR
YVSVMSRERFEFLIRCIRMDDKTLRPTLRSDDAFLPVRKIWEIFINQCRQNHVPGSNLTVDEQLLGFRGRCPFRMYIPNK
PDKYGIKFPMMCAAATKYMIDAIPYLGKSTKTNGLPLGEFYVKDLTKTVHGTNRNITCDNWFTSIPLAKNMLQAPYNLTI
VGTIRSNKREMPEEIKNSRSRPVGSSMFCFDGPLTLVSYKPKPSKMVFLLSSCDENAVINESNGKPDMILFYNQTKGGVD
SFDQMCKSMSANRKTNRWPMAVFYGMLNMAFVNSYIIYCHNKINKQEKPISRKEFMKKLSIQLTT
>gi|125849599|ref|XP_001341002.1| (piggyBac) piggyBac transposase [Danio rerio]
SVLQYFQLFFSKSVMQKIVDHSNIYASMHTNEKKKPWKNITIKDLKSFIAMVIYMGIVKCFNLTDYWKRTDFYSLPYPAR
IMSCRKFLSMCWALHLSNPKVDAENDKKKGTPQYDRLCKIKPLYQDIRDACKASFHPHQNISIDERMVASKARHGLIQYM
KNKPTKWGYKLFVLADSLCAYTWDFFIYEGKVKTEQRKGISYDSVMALIDERVLGTGYKLFVDNFYTSPTLFRDLLSKKI
GACGTIRANRIGHSKTPAPRGNIRWFREDGLLFVEWKDKRDVLMCSTFHKAYNGDYIKRNVKGKGGVWTPQDFPVPAAVL
DYNKHMGGVDVSDALIGYYTVLHKTKKWYRSFFYHFVDIAVVNAFILHQQMAKSKNQKAMTQKVFRETLVAELAG
>gi|118088243|ref|XP_419582.2| (piggyBac) piggyBac transposase [Gallus gallus]
SAMDFFQLFVPDNVLKNMVVQTNMYAKKYQERFGSDDTWIDVTLTEMKAFLGYMISTSIHHCESVLSIWSSGFYSNKSIA
LIMTQSRFEKILKYFHIVAFRSSQTTHGLYKIQPFLDSLQNGFDSAFRPSQAQVLHEPLIDEDPVFIATCTERELRKRKK
RKFSLWVRQCSSTGFICQIYVHLKEGSGADGLDALKNKPQLHSMVAKSLCQNASGKNYIIFTGPSITSLNLFEEFEKQEI
YCCGLLSARKSDCTGLPPSMLNNPDTPQSRGQYRIRMKGNMSLICWYNKGHFRFLTNAYSPVQQGVIIKRKSGEIPCPLA
VEAFAAHLSYICKYDDKYSKYFISHKPNKTWQQVFWFAISIAINNAYILYKMSEAYHVTRYSRAQFGERLVKELLG
>gi|17534623|ref|NP_494149.1| (helitron ORF) F59H6.5 [Caenorhabditis elegans]
MDNELTSRPDSIMDTEPTTLPDSAMDTKPTNLPDFPSTSQEPVSRRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMD
WERKKEKRASMSEEEKAEMKYKKRVWMKKKRNEVAKTHDTSSVANPNYLGSMRCVCKNCNARFFQGEVSSSNDHINMCCY
FGLTTTLQDRFSNYPDELRHLLLDDSSHARNFQKNIRQFNSSFAMASMGAQLDVPRGRGPYCFKIHGQVYHFAGPLHPDP
GQRPAFGQIYILDTDQATDERLGNPANADCDPAVMAELSSLLLRTNPYAQAYKMMAEVEEKENSEAAKEGRHPGCVRLIF
DISTTKDPRRYNLPQANEVAVVFVGEDDDVPTTRSLAVHPRGGGLKTIRDIDRICDPLTYPVLFPNGTDGWHPDLEKRPS
EKKQGRITQKMYYSYLLMERSGVFNPLHHGRALFQQFAVDSWVKIEQNRLNYHRTHQVDLKAANYNAVQDYIAGDTDVPG
RRIVLPSSFPGSPRAMVQNFQDAMAIVSKFGKPDIFLTFTCNPAWTEISENLGPRQSASDRPDLIARVFKLKVDALFDDL
LNRDILGHVAAYISVFEWQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELYRIVTTAMMHRPCGAQNPH
SPCMVDGHCSKRYPKDFHPSTTLNVDGYPGYRRRDDGRYVEYGTQHLDNRRVVPYNKWLLLRYNAHMNVEICGFIEAVKY
LFKYVYKGHDRAALNIIQNVRGDGNVVDEIREHLDARYVCAPEAIHHILGFKLEKKSDTVYRLAVHLEGFQTIYFRASVT
TQQLESSSQTDTTLTAWFKINQKSKDIAESGNIPSTFVDSRQFFYMDMPTHFTFVKKDGWKVRGRGTRQIGRMYTVPPYE
TERYALRILLLNIKGATSFEDLRTVLDENNVPVVYATYVEAAKAQGLLNDDSEYLKSLKEWAGCSVPAALRSMFVAIILF
NEVHDLNALWDAVKWDLSEDFRHAGAGKEEAEALAYFDIESRLQRVGKRFDVTKPSINPPPIDLDTVNPAQCASEGNRLL
ATLNDQQKRAADQILAALDDASLPRLFYLDGPGGSGKTYLYITLYNICVGRGLKVACTAWTGIAANLLPLGRTSASLFKL
DIRNQCKSSLHQRQLKEAQELAENDVFIWDEASMVPKTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSR
ADQVDACIKRSPLWTEFQILHLISNMRVTSGDSDWIQFLLNVGDGSANHSDSKVTLPLSVMCDHNIVEEVFGAVIDPTTS
YPCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFLNKMSPSSLPPHILKLKKGSVIILLR
NLDVSAGLCNGSRFIVETLASHSLGCRFATGERKGHFTIIPRIDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSK
IGLWIPTDVFTHGQLYVALSRVRTKEGLIVKSSSNIVTNIVFNEVL
>F18P9 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LAAGIIRPSNNPFSSPVLLVKKKDVSWRFCVDYRALNRATILDKFPIPVIDQLLDELHGAVIFSKIDLQAGYHQIREDVI
AKTAFHTLEGHYEFLVMPFGLTNAPATFQSQMNKIFSPYLRRFVLVCFDDILVYSRTVEEHAHHLSLVLKLLDENQMFAN
ZKKCSFGVPQVEYLGHII
>MVA11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LSNGTIZVSSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGAMAFSKIYLRAGYHQVCMDTE
DKHKTAFKTHSGHYEYLVMPFGLTNAPATFQSPMNSAFKDFLRKFVLVFFDDIFVYSSSVEEHKKRLRMVFEVMRKQKLY
AKMSNCAFAVPZVEYLGHFI
>F23C08-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYWGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASRYHQIPIAPT
DVRKTAFRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSWEAHQEHLRAVLERLREHELF
GKLSKCSFWQRSVGFLGHVI
>gi|15230800|ref|NP_189677.1| (helitron ORF) [Arabidopsis thaliana]
MARKINFPSGGSPDFLTPNQLFGVDYSGNVLSDITNISGESIVSTIRLMSNNKEKVSNDQDRSEEFDDHIFDCSSQEEYE
SDKDSPTDEVVGPNNMIDMNDLLRRNLNKEFAAAASNKEHGSSTTSRCCMQGQIVLPMLKESPEYMWWLFTSDHPDAKNF
RANVRPYNMLFSFTSLGGKVDRSVKKGRGPSMFALQGENYHLIDALKPKPGDYAKFQQLYVMDTDNEVDNRIEVMSKGNN
GKTEGVKQKFKKETVSALLKMLDEINPHVANFRIARDRFNIEKEDANFHMRIISNRDTDGRVYNLPSVGEVALIPGDFDD
NLDKRDIVLQIKSEKLRRIHECHVSYLSLQYPLLFPKGEDGYRLGIKKTETNTSKRKKKQKDVSMRQWFDYRLQERKDEK
HILLRSKRLLQQFIVDAFTMIESNRLRFIKKNQTKLRSTNKQAVQDASDAGDNDLSNKGKSVIIPPSFTGGPAYMQQNYL
DAMGTCKHFGFPDLFITFTCNSKWPKITRFVKERKLNAEDKPDIICRIYKMKLENLMDDLTKNHIFGKTKLATYTIEFQK
RGLPHAHIIVWMDPRYKFPIADHVDKIIFAEIPDKENDPKLYQAVSECMIHGPCRLVNPNSPCMENGKCSKYYPKNHVEN
TFLDNEGYPIYRRRDTGRFIKKNKYPCDNRYVVPYNDFLLRKYRAHINVEWCNQSVSVKYLFKYVNKGPDRVTVSLEPHR
KEVVSEENNVGETNNDPQEQNQVEDYFDCRYVSACEAMWRIKGYPIHYRQTLVTKLTFHEKGKQPIYVKEGETAESVLYR
VNDDETQFTAWFELNKRDPEAAKLLYEQIPNFYTWNGKDKNFRRRKMPGFVVGRINHVPPKIDDAYHLRILINNIRGPKG
FDDIKTIEGVVHKTYRDACYALGLLDDDKDYINGIEEANFWCFHKYVRKLFVIMLIFESLSSPAVVWEHTWKILSEDFQR
KVRDKLKCPAAKNIETTWNRSLEEKMLPQLKPGDEPAFNQLILDERNYNRETLKTIHDDWLKMLTTEQKKVYDKIMDAVL
NNKGGDICLNVASSGIASLLLEGGRTAHSRFGIPLTPHETSTCNMERGSDLAELVTAAKLIIWDEAPMMSKYCFESLDKS
LKDILSTPEDMPFGGKLIIFGGDFRQILPVILAAGRELIVKSSLNSSHLWQYCKVFKLTKNMRLLQDIDINEAREIEDFS
KWILAVGEGKLNQPNDGVTQIQIRDDILIPEGDNPIESIIKAVYGTSFDEERDPKFFQDRAILCPTNDDVNSINDHMLSK
LTGEEKIYRSSDSIDPSDTRADKNPVYTPDFLNKIKISGLPNHLLWLKVGCPVMLLRNLDSHGGLMNGTRLQIVRLGDKL
VQGRILTGTRVGKLVIIPRMPLTPSDRRLPFKMKRRQFPLSVAFAMTINKSQGQSLGNVGIYLPKPVFSHGQLYVAMSRV
KSKGGLKVLITDSKGKQKNETTNVVFKEIFRNL
>At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) [Arabidopsis thaliana]
RHKGKLSRAIAGVFRRKFDGPYFIWKVTPLNIRERYFRSFLRMFYWDHGLTEAVRAGFEVIAQKRMKGIISQAKRSGSQP
LLIRDKLWNQMWVHWNTSQAMVRSESASQCRNSGRGGLGPHKHVSGQKSFVQVHQELEELYGRPVAFGEVFMKTHTRADG
SYVDAKAEKVPEIYKKTCEERLIEIDDDGPENSVNSSEQSTHRDLCIEEKNEIFLQCTEKDQKGNHFGLGSLVQTLS
>gi|167876703|gb|EDS40086.1| (piggyBac) piggyBac transposase [Culex pipiens quinquefasciatus]
TAADFFKLLITPEMADAIVKYTNLHAEQNGEKNWKMFTVNEFYAYIAFQIVIGYEKRRKCALARLYTTEPLHRQPIFSTI
MAKTRLEAIIRNIRFDERATRQKRISETGDRAAAIREVFDAFADNCAKAYDPSGVVCVDERVVPCRAKCGILVFMKNKPG
GKEGVKVFLGADLENSYGFFFQIYFPKKRKSTPKTVPTANKKPREEKQGMRVVLDATERIQGSGREVVVDNFFTSVEAAK
KCKERGLFLTGTLRKCKPDIPREMLPSRTRTVHSSIFGYNSDLTITSYVPKKNRAVVFLSNNPNLCGVDETTSKKKTVVN
LHYNVGKAPVDNLDKSTREFSTARKTKRWPNRMMMDIVDLAMHNAEILHHLKYPEWRASTRQSRFKFFQKLSYELAY
>Pi_model.supercont1.15.5.1 1380 (hAT) hAT family transposase [Phytophthora infestans]
MEAVTKAVNRAIGDEMSENFGLVLDGWTHGTERYLAVFACYETSAGLQLPLLSLAPVMDEPDDQLKAEGHLTAIKRFLPF
FGKSVSGCLYLVGDNCSVHKPLADLLGVPLVGCASHRLNLAARDFLEPSEDDLEAVQQLMRKLRTLKQAAKLRIKTPLRA
VLQQDTRWSSTFSMLKRYFCIREFISADDDELADYLPSRTAHRKLAALLASLEDVESVSKRLKANGLTLLDERDLFDGLI
EIQPSFAKYIAYDANIVHSPDFEKAVVNVLAGHTALLTDAENATLAPFKRRASMASVCERAAVTKEGFAERILKRRKVPA
APATYMLLGAIPPTSNIVERLFSMALRHERHQLSPIMLEMILFLKVNSSRWDVATVEQCL
>Pi_model.supercont1.23.3.1 1225 (hAT) hAT family transposase [Phytophthora infestans]
VEDLSKAVEGHVGDEMPDKFGLMRDGWMHGSETYLAVFGCYETKSGPRYPLLSLTPIVVDASGWVDAETHVAALAAFLPF
FGKDLSNCIFLVGDKCAVSMRLARLMSVPLVGCASHRLNLACVPRRGLLADPREESTRCRGTCHLHLLLVARVVSADVGH
QVGVPRLVDVLAGFATSFADLKASRISVFGKVKLEEERSNLLWEDLAPRALRRHQGSVGHGEGCA
>Pi_model.supercont1.4.136.1 1273 (hAT) hAT family transposase [Phytophthora infestans]
LNLAVRTLLDPHEQDLEQVQSLMKKLRTITQAAKLRLSMARMILHYERNRLSLTLAVRTLLDPHVQDLEQVQSLMKKLRT
ITQAAKLRLKTPLRSKLRQQTRCGSTYAMLARYLDLREFINADNEDVVELLSSPASNRRPKALLTEMGDIESISKKLQSG
ELNLLDARDLLDGLLEIKPSFTTYLAPRADIVHSPDFEGGVVKALGGHEKDQTSAEKEALRSFQRATSTSSDPVEESVKL
GFADRILKRRKITTEPNTYTMMSAIPPTSNKLE
>Pi_model.supercont1.776.1.1 1369 (hAT) hAT family transposase [Phytophthora infestans]
MKKCSESVGVLIESELGKLFGVMWDGWTHGTTHYVGIYGVCYADGKRRERLLSLSPLEDGSQDAEVHIEMFERVLALYNK
DISMVAFLVADNCATNQRIATLLELPLVGCASHRYNLAVNRYLAAYEPELAAVNSLMVQLRHVSNAAELLKFTDLKPVKR
NVTRWSSTFAMVDRYKKLRDSIRQVDAVDELIPKGSAHKKLLGLLEHLKKLDSACKTLQREDTSMADVRVLFDQVVDDYP
VMASHLRPAAKIVHAPAFEAALVKICNNAKLTASKARAVQRLVVEARCCNCATLRGGKQMRAAGAAGVSFHELAKVVPPT
SNTVERLFSQCKLILTPQRSCMLSANFEMLAFLRVNRDMWNATSHVANE
>Pi_model.supercont1.7.16.1 1217 (hAT) hAT family transposase [Phytophthora infestans]
TTSAKAALSVNPVGFLGSFALMFDGRTSHSLHFLGIYAIYVYNGVRHQRLLALSPMEDGQTAEARLDHISTVLSVYEKNL
QMVRYVVGDNCATNQSMATRMGVPRLGDALVLVADLVAQPAFCGVNGTALTVVSRRKRVFLFGSQKRTDLARPLVALLNA
TDGNPVFGLLESVCQADWCSPTFLAGPRWRSLNTRKALGFELQELALKDRKPLGAFH
>gi|148550589|ref|YP_001260028.1| (TyrRecombinase_Crypton) phage integrase domain protein SAM domain protein [Sphingomonas wittichii RW1]
MTESSTKSSPMEIIVVRTNDTALPTRSRKTDAESVDVRLLRTIGEIIPTDLPPISQLGLETTLAAMADATKAAIAADLDC
WRDWCGEEGRRPLPADPEDMVRYVNALDAKGRKPATLARRIASIASVHRMLGLASPAAPTDAPMVRAALKAIRRQRGALQ
RQAAPLRLGKALDHHAAKGFTLAALLEACGGDLQGLRDAALLSLGYDAGLRVSELTRVEATHIDAQDDGSATLFIPFSKT
DQEQEGAWAWLSAETMRRVALWQAESAIEDGLLFRRVGVYRRRARGSDPETALARTTYTIGKEALSRQGVNGIYRRVASA
AYEMGLVNLSASKLADAVQALSTHSLRVGLTQDLFAAGEDGAGIAQALRWSSPTTALRYGRKLAVRSNVAARVLSRVRS
>PITG_16330 (TyrRecombinase_Crypton) /1377
MGLEELQPDITLGAKATAVAAFSNGKSFVCGMDKVGMYLAFSEGKKGTLLARNTAMQYYRQAKIWLLEQFPQHRASLESR
LLKMGKTLDNFCLKRDGGGFVAKVPPCTKADLKKMAVYLYVNACSESDCQDAALLCLLWYLFRRASDLSMIKKRNISIDA
ARVFFLRLVRVKTSKEQGLSLFPDADFATCPLLAVALVLSVQAAPCPALIGSLPDQVQQTLTTLSPDVPLVELLSAPPMT
SGLATPAPPPPRNAAAPTIYAHVSRVLDRVAPAAGVSAALTEDHMVAKVLSGNKPEDVFQRVLFAACYQLETESFNINRK
VLDVLTACVVRHYPVVKGLKTKSPANRR
>gi|21885465|gb|AAM76342.1| (piggyBac) piggyBac transposase [Daphnia pulicaria]
NPLGVFKSMLGGEDTLYLLREATNDYIAEFWSSRKTPPSRKVGGKPEGRLIGPRLPAGGFVTDHELVAFFGIQFLIGYHR
LPELSMFWEQQPDAGLGLGIIQQAMTRERFKFISKHIACASPWDDVDPNSDDPDQEPERPDPIRKIRPLVKRLNERYHAC
RKPPRGQSIDESMVKFKGRSVLRQTMKNKPIKSGFKIWSRCCHRGYTYKFEIYQGARFGEKQGRSRNNEAVERVVVDLCQ
PLTDQGFVVAFDRFFTSIALLDKLRENGVNAVGTILPSRVNQPSNLRPDEFAAKFGGEPGTCRKGIFVWRDTKAFRVASN
YHGSNLVKVRRKQRDGSFKTKSCPKAIDDYVNNMGGVDTANQLRSYYERDRKAKKWWHRLLYSLLETCLVNSWICFNDMV
RSQMAEIKT
>PITG_20069 (TyrRecombinase_Crypton) /1570
MGLEELQPGNTLRAKATAEDESGKSFVCVMDKFGMYLAFSEGKKAKIWLLEQFPQHRASLESRLLKMGKTLDNFCLKRDG
GGFVAKAPPYAALLCLLWYLFGRASDLSMIKKRSISIDAARVFFLRLVRVKTSEEQGLSLFPDADFATCPLLAVALALSV
QSAPCPALIGTLPDQVQQAPTTLSPDVPLVELLNAPPATSSLATPAPPPPRTAAAPTIYAHVNRVLDRVVPAAGVSAALT
SHSFRRGGAQHANGCEKMTARWIFNRGSWNLSTTNKGFNYIFNTSREDHMIAKVLSGYKPEDVFQRGLFTACYQLETESF
NINRKVLDVLTACVVRHYPVVKGLNPDSPAVQRLETCVTQAGRTLPDLLAC
>gi|56266668|gb|AAV84949.1| (TyrRecombinase_Crypton) tyrosine recombinase [Enterobacteria phage D6]
MSELIISGSSGGFLRNIGKEYQEAAENFMRFMNDQGAYAPNTLRDLRLVFHSWARWCHARQLAWFPISPEMAREYFLQLH
DADLASTTIDKHYAMLNMLLSHCGLPPLSDDKSVSLAMRRIRREAATEKGERTGQAIPLRWDDLKLLDVLLSRSERLVDL
RNRAFLFVAYNTLMRMSEISRIRVGDLDQTGDTVTLHISHTKTITTAAGLDKVLSRRTTAVLNDWLDVSGLREHPDAVLF
PPIHRSNKARITTTPLTAPAMEKIFSDAWVLLNKRDATPNKGRYRTWTGHSARVGAAIDMAEKQVSMVEIMQEGTWKKPE
TLMRYLRRGGVSVGANSRLMDS
>gi|168467784|ref|ZP_02701621.1| (TyrRecombinase_Crypton) phage integrase family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317]
MTNSLTVHQNLPALPVESVNEEVRRNLNAMFRDKEAFSEHTWKMLMSVCRSWAEWCSVNGYTWFPAHPENVRDYLLGLQA
RGLAVKSIEQHIAQLNMLHKRSGLPRPSDSMAVSLVMRRIRKENVDAGERAKQALAFERRDFQTVRSLLIESERIIDIRN
LAFLGLAYNTLLRISEITRIRVKDISRTEGGRMLIRIGRTKTLVSTAGIEKALSLDITYLVDRWITASGVGEDPDNYLFC
RVRKNGVAVPSSTSKLTTRSLEHIFEAAHYKVYGAKDASGERYLAWSGHSARVGAARDMARAGVGVPEIMQAGGWTNVEI
VMSYIRNLDSETGAMVRLLEET
>Copia-120_SB#LTR/Copia 295-4957 via tfasty with OSCopia2, 2 frameshifts and 1 stopcodon. [Sorghum bicolor]
MAADDDSAAAAAKDAQDRAAKEAEDQRLAAEAEAAHREEEARLRAAALDEYEQAHEALWAQATAVVNVKALIPIVLDKAT
DSYTKWRGIFLTVLGKYALTRHVLEDEVFTRPAWVQTDCCVLTWIYGTVSSDLQQSLMIRQGSARTAWCYLEDEFLGQKE
TRALLLETQFRNLRQESLSITDYCRRLESMAASLAEFGDPIGDRQMVLTLLRGLNGKFRHMVSILKMHRPFPTFPEARTH
LLLEELEIDAHPPSPPAALVAATPRPAASGPPAPPAASRPGAPQAPARSLGAPGAPTGGQRNSRRRGRGGRGGTQPAPTG
GAPPGFPGGAPPGGAHGVQPSFAHPWAGTLQMWPYGRPPPLAAGVMWPYGRPPPPPPAFTAVPQYGVPGGHTYGTGYAAP
PPQYAYGGAAPSPPAFQGPIPAYQMPGGMPWNPTHGGTWNADSLAQSFNTMTLTPPASSEWYADSGAGSHMTADAGNLSV
TSLPSSCTPSSIIVGNGALLPVTATGSHTFSFPHRNLVLNDVLVSPHIIKNLISIRRFTTDNNCSIEFDPFGLSVKDLQT
RNVIARCNSSGDLYPFYPSTTSTSALIAAPTSLWHRRLGHLGREALSKLISSSVISCNKDDHHVCHACQLGRHTRLPFGS
SSSRARHNFDLIHCDLWTSSIVSVSGYKYYLVILDDCSHYIWTFPLRLKSETFSSLSNFFAYVKTQFGTTIKSVQCDNGR
EFDNSPARTFFLSHGVALRMSCPYTSQQNGKAERSLRTINDILRSLLFQASLPPVYWVEALHTATYLVNRLPTKTLAFST
PYASLHSTQPTYEHLKVFGCACYPNMSSTAPHKLAPRSSLCVFLGYSSDHKGYRCLELQSNRILISRHVVFDESFFPFAN
MSTTPMASSALDFLLDEHDLTAPIPGARFVHAGTPHVVHGAVEAPTPPSEMSAGLRTLFPSPSPFTTTTDAAASSAPATP
TGTAASSAPATPTGAAASSAPAASPTTVPGAAAPVHPAQAAASSTAATGRTAVTRPVSIIPVVNAHGMRTRGKSGFAQPV
DRLNLHAVHMSPLPRSVRDALSDPHWRSAMQAEYDALITNDTWSLVPRPPGVNVVRHKLRADGSLDRYKARWVLRGFTQR
PGVDYDETFSPVVKPATVRVVLSLAISQDxPIHQLDVKNAFLHGTLTETVYCVQPSGFVDSSRPGFVCRLNKSLYGLKQA
PRAWHHRFASHLFSLGFVETKSDSSLFICRRGTETAYLLLYVDDIVLTASSAGFLKIIIGALQHEFAMTDMGQLHHFLGI
SVTRSANSLFLSQRQYTQDILERAGMSACKPCSTPVDVHSKLSADGPPVDDATQYRSLAGALQYLTFTRPDITFAVQHIC
LYMHDPREPHLTALKRILRYLQGTLSLGLTLRRSSLTELVVYTDADWAGCPDTRRSTSGYAVFLGDNLVSWSSKRQHTVS
RSSAEAEYRAVANGVAEATWLRQLLLELRHPPRRATLVYCDNVSAVYLSSNPVQHQRTKHVEIDLHFVREKVALGHVRVL
HVPTTSQYADVFTKGLPTSLFQEFRSSLTVSDAPD
>Copia-118_AA#LTR/Copia 5-3905 via tfasty with Copia-114_AA, 1 frameshift. [Aedes aegypti]
MGDHRKEAAVHGIQQFVGKGYDVWQFRVQTYLESVNVWDAIVKDVPVTAAEAAKFHETDRKAKAILVGFVADEYLGCIRD
KGTAKAMWKSLEDTFAKKSAGRQTLIRKQIARLHLKDGASVRTHLLEFEDLIRQLRMAGSKLEESDVCSSLALTLPESYD
ALVTALENLPENELTYEVMKTRLIDEESKRNDRSYTVEDKPAAFIGDNQKKGNRFNGKCHSCGKRGHMKKDCKKAKGNAN
VASIFKPVVFMADRAVTKRDSVGKIVFKLDSGSSDHLVNKKTYFKSVKSVQSPIIINVAKDGQFLEAKQVGEISGSSNLG
VPLNVKDVLYVPSLRDNLMSVKKLAKAGVEVAFNSKVATLKLNGKTIATAYLRGNLYEHEIEVPEKEANLCSSETANLWH
RRLGHLSENSMKMMVREDLAKGLNFKPQKLQFCEACVQGKMCREPFDGKRERATRPLGRIHSDVCGPIEPASWDGHRYFV
SFIDDYSHFAMVFLLKKKSQVFEKFQEYEAMVTAMFGASISKLTVDQGREYCSGNQMKFYKAKGIQIEATVAYSPQQNGV
AERFNRTLVEKVRSMLIDSRMPKSMWGEAVLTGTFLMNRSPTSALPRNLTPTECWTKQKPNLEKLKVFGSQAFAWIPNQY
RKKLDAKSRELVMIGYASNGYRLWDRNSRKIVIARDVKFNEACYPYASNSSKSEDIPLMILTSSDQEGESKNYLVSGEEN
EARNSVEMIEAEDSEYDDELPTALPSQQERDSNSDESSTRRSERERKFPGKLLEYLTGFEATAVGSPQFTDIPQCFNDIA
KSDDRDHWMEAVLDELKSMEANRVWQLMKRPPGVKPLKSKWVFRLKENECGQAIRHKARLVVKGFLQRPGIDYEETFAPV
ARLATVRVVLAVAVRYGFYLHQMDVKTAFLHGNLKEELYMEVPDGVQAAPGTVCKLLKSIYGLKQSPRCWNEKLNTVLLK
LGFSRSKRDYCLYTSTKENDEIFLVLYVDDLLIIGRNIRTIEHLKQQLSREFKMSDCGEEKFFLGIKLDYDRQRGILKLS
QGSNAQKILKKFGMIDCNAVKTPMEKGLQLSRAGSRTNEPYRELLGSLMYQMLCARPDICFTVSYLGRYQQNPVDHHWQA
LKRVVRYLKGTSELGLLYKRNESSAPLIGFVDSDWASDQEDRKSVSGFVFKVFGSTVSWASRKQVTVSTSSSEAEYVALS
SAVSEAIWLGGLLEDLKCKSKAEAIPIFEDNRGCIGLARNMESKRIKHIDIKHHFLRDHVAAGTVTIEPIGTADQEADIF
TKSLDTVRFQDLRSRLGVTD
>Copia-124_AA#LTR/Copia 65-4134 via tfasty with Copia-108_AA, 5 frameshifts. [Aedes aegypti]
MDREGEVARVPQFDGSNYPQWKFRMSVLLQEHELQECIEVDLVEVDELKVKEEDSAAVRDAKSKAVEKRAKKDRRCKSLL
ISRVSDNMLEYIQDKESPKDVWCALERVYQRKSIASRLHLQKKLLTLRHGGGCLQDHFLTFERIVREYKSTDAKLEDIDT
VCYLLLTLGPEFATVVTALETMPEDKLSLDFVKCRLLDEEIKHSSGESDDRVIRRVDAAAFSGAGAKQQKKKKSVKWKCF
GCDREGHKIADCPEKRNNEKKKESKKTSAHLGKSEKSVCFLSGESAGLRKSSWIIDSGSSEHLTNDRKLFKKLFPMKEPM
HISVAKEGESIVAKEYGDVDVFAAARGKSIPITLKKVLFIPEARVNLLSVRKMEMAGLKVVFANGIVTIERESKVIAVGE
RRGKLYELDFHREKPSESVLYSCGRVPKELELWHRRYGHLSAKNLKVLMDNGMVDGISAKPKKSGDEFVCEPCLAGRQTR
KPFAVREDRQTKRVLELVHSDVCGPVTPVGIEGERYFVTFVDDWSRFTVVFLMNSKDEVMDKFEEYEALVSAKFGKRISR
LRCDNGGEYVGREFRKFCKKKGIKIEYTVPYSPEQNGVSERMNRTLVEKVRSMLEDCGIGKEFWGPAIQTAAFLVNRSPA
SAIGQRKTPYEVWEGNRPNVRGLRAFGAVVHVHIPKERRKKMDAKSWKGIFVGYAPCGYRVWDPKQKKIVVARDVVFVEN
ATKMSSEMDPKPERSADVFPIRAIREDSDVDSDAEGEEVSDESSDDAGNSDEESDESDAYESGGDDQYDSCADRTIREAE
SEEQAEAESPGRRSGRSRKPPEWHQNYEMNYTGFALNATSFVDNLPSSLAEMKKRPDWDKWQAAVHEEMDSLERNQTWTL
VKLPEGRVPITCKWLFKVKHNEGDGEERYKARLVARGFSQRTGFDYAETYSPVARLDTVRVVLAVANEHRMAVHQMDVKT
AFLNGHLEEDIYMTQPEGFERGKHLVCRLNRSLYGLKQASRAWNARFHSFVERLGFRRSLSDPCLYVKGSGCNQVILVLY
VDDLLVVGRQLKAVEVVKRCLAGEFEMTDIGEVRRFGMRIDRDTEQRSLRISQKGFLENLLRRFNMQECKAASTPIECRL
RLKKGEEAERTDKPYRELIGCLTYVTLTSRPDLCAAVSYLSQFQSCPTEVHWVHAKRVLRYIKGTLDLGLVFVAKESAPV
IEAFADADWANDPVDRRSLTGFVFRVCGSTVSWLTRKQSTISLSSTEAELVALSTAVCHGIWLERLLKDLAIEPERPVVY
HEDNQSTIRVAEEERDTGRLKHVDVKHRFVREEIQRGRIAVRYIPTGKQIADIMTKGLPVSVFQKHRASLGLASSGH
>Copia-130_AA#LTR/Copia 1666-5041 via tfasty with Copia-23_CQ, 2 frameshifts. Fragment. N-term 50-100 AA missing. [Aedes aegypti]
MEEQALKIGGRGKQQNTAECYFCGIQGHRKKDCRAYLAEQNSNEKSKKRSYKEKAKVVHEDDQNKAFTFMVRNRRQASKS
RIVDSGATSHLANDHKSFQRLDSSARPEITGADGNSIRTAGIGDCVIQCLDSKGKEVKITLTEVIYAPDVEGNLLSITKL
TEKGVRAMFEANRCSMWINGEEIATADRVSGLYRLNTVEESRSLMVANRQHNKDCQHLWHRRLGHRDPDVLGEIERKNLV
SGMQVKNCGIQLTCECCIEGKMARPTFAKEAVKTSKEILDIVHSDVSGPMTKTQGGCRYYLTMIDDHSRCTVVYFLKSKS
EVEGRIREYVRFVETQFGRKPKAIRSDRGGEYTSHSLRKFYVSEGIKAEYTAGYAPQQNGVAERKNRSLNEMGLCMLLDA
GLPRKFWAEAVNTAVYLQNRLPTKATDITPFEVWFGRKPDLSHLRVFGCGVYAWKPQQKRKKFESKAVKLTFVGYATDSK
AYRLLNTKTGEIVISRDVRFLEVDELAKKIPDGSMEKPAIDEAEETEVPLQLTDLENVAPEVAEHRDEFEDPEVEDDEEA
YELAEQTLSDGDESQLNDDTMKQAVVRRSTRPNIGVPPDRFQEVVSLAVDLAEPKTFAEAVSGAEQVQWKAAMKEEMTSH
RENGTWEITELPPGRTAIGCKWVYKRKQDETGQVTRYKARLVAQGFSQKFGTDYDLVFAPVIKQATFRTVLTLASRDRML
VRHVDIKTAYLYGELQEEIYMKQPPGFMSSNVNDVCRLRRSLYGLKQAARVWNHRIDGVFKKLGFHSSTADPCLYVRRTK
NGFLYLLIYVDDIVVVVRTESEYRALVAALKEEFKITELGDLRFFLGLQVRKKNGRYSLNQRSYIIKVLSRFRMENAKTS
RIPMMTGFLQQKEEELMQNQGEFQNLIGCLLYIAVNTRPDVAIATSILGRRVSNPTTADWNEAKRILRYLKGTADHELHL
GGGEPCEMECYVDADWAGEIGERKSNTGYIFKLGGGLVNWRCSKQTSVSLSSTEAEYIALAECLQELQWLRKLMDDLGES
MKLPVRVNEDNQSCIALAVADRTTRKSKHIDTKYCYVKDLVKNGIVTIQYCPTDKMEADLLTKPLGAVKLKQLREAIGVR
LANVEE
>Copia-128_AA#LTR/Copia 90-4063 via tfasty with Copia-138_AA, 1 frameshift. [Aedes aegypti]
MSSAKKAGIVQFAGEGYDTWKFRVETQLSAHGVKETITEDPPAEEPARTAFLEKDEKAKALLVAYIADSHLEYIRDKQTA
REMWTSLANTYAKKGFAAQTYIRRSMALLRMEEGTPLADHFRRFDELGRQLKNAGATVTELDLVSQLFISLPPSYDVVTT
AMENLDDQLKLETVKARLLAEEQKRSGRESGSSAASGSDGVVLAARSGNRRPQSSKFAGKCYHCGEIGHKKFACPKVKNR
SDRAQVAKIPIDKAVALASGAKVSEKPDEIEWVLDSGASSHMVGDEGYFQEIHELHVPLRIDSAKDGERLVATKEGTVKA
RLCVGENRYTLSFGHVLLVKQLKYNPMSLSKLLNAGVHVEFEPDRAILTKDGETIGVAKSKGNLFYPRMNRLPSGSALAA
GSNTELQLWHKRYGHLSFKNALELKNSAMVDGLDGLHGDAKFCDACAESNMVRQPFCGTRPQTRRPLERVHTDVRGQITP
STSDGYRYFLSFVDDYTHFGVVYLLKRKDQVFDYFKVYEAMATAKFGTKIANLRCDLGREYFSKERLAYYDAKGIQVEST
VGYTPQQNGVAERFNRTIVEKMRAMLTESGAPKYLWGEAVLNAVYVTNGSPTEAIKGKETPAERRHGEKPDVTKLRVFGC
QAFSWVPKRKRGKLDPTGRKCAMLGYAPTGYRLWDQEKRKMFVARDVRCNEAAFPFKAPSESDGRLVIPEDVSPVPEQEG
EIEEQQMIKAVGEARNDARDSDDEDVGDQDPDEDSATEVEDNDEEGATALPPQSERNETTGEVPRSSGRECRRPGWFSDF
LTYKALSAGANSLQVPECYNDVKGHPNEPDWREAIRDELVALQKNQTWTVVKRPAKVQPVPCKWVFNLKTDADGRPARYK
ARLVAKGYAQKRHVDYEETFAPVARLTTIRTLLALATTNGMHIHQLDVKTAFLNGKLKEKVYMQCPEGVKMRPDEVCLLH
RALYGLKQSPRCWNSHFNEFLTTLGFVRSKHDYCLYVRACGDATVYLVVYVDDLLIAAVDEADIERVKTTLMQKFEMTDM
KELHHFLGIKIHRDLDRGLMKLSQTSQIETIIARFGMQNCNPVKTPAEPRLQLKREAGKCEYPYRELIGSLMYVMMGSRP
DLCFVVGYLARFQDAAGEEHWKHAKRVLRYLQATKKLGLVYRSKPKEPTVAAYVDSDFASDECDRKCVSGFLLKVHGNTV
AWSSKKQSTVAMSSTEAEYVAMSSCVSETIWLTGLMADLRQDALLFPVPLYEDNQGAIAMAEREETRRVKHIDVKFHFIR
NAVAEGKVKLIYIPTQKQQADILTKSLPAPTFIALRSKLGLEGNN
>Copia-117_BRa#LTR/Copia 19-4118  [Brassica rapa]
MGDLVVAKPKEGGSSSIKCPILTTTNYTVWAMKMKLLLKVHKVWEVVETEVADDEKSNMAMALIFQSIPEALILQVGELP
TAKKMWDAIQTRHVGAERVKEARLQTLMADFDRLRMKDTETIDEFVGKLSELSSKSLALGEEIEESKLVKKFLKCLPRKK
YIHIVASLEQVLDLKTTSFEDIIGRLKAYEERVHEEEEENQEDQSKLMYANSEGQQQSRDFNNNYRGRGRGGRFYNRGRG
RGRFNGQRDASRLTCFRCDKTGHVAYDCPDRLLKLQETVQETDNTSTQEADELMIHEIVYLNEEKIVPSNYEVREGDDDI
WYLDNGASNHMSGDRRYFSTIDDSVAGKVRFGDDSRIDIKGKGSIEFVDRNGDPRRLSDVYFIPDLKSNIISLGQATEAG
CDVRMKGEQLIMHDKDGKLIVKAVRSKNRLYKVRMKVKEDVSFLSTTTTESTKWHARLGHVNLETMKAMIQRDLVIGMPK
IKVEKKVCGSCLLEKQARHVFPKATAYRATQRLELIHGDLCGPINPSTSAGNRYVFVLIDDFSRYMWTLLMKEKGEAFTK
FKHFKNIVEQETKEQIQTFRTDRGGEFVSSEFNTFCNESGIKRHLTAPYTPQQNGVVERRNRTLMEMARSILKHMSVPNF
LWGEAIRHCTYLLNRIATRTLNDQTPYELYRGKKPNISHLRVFGCIGYAKVDSKHLKKLDDRSRMLVHLGTEPGSKAYRL
LDAGTKKIVVSRDVVFDETKGWNWRLDEAEKNRVGEFEITIGSFGNHGIRDAEQRIKGGDNVNTTADNETVVIDEQEAES
DDNETEEQEEQMQLRRSQRQASKPRYLDDYVLFAEEAGEILLMSVNNEPYSFEEAKGSKEWIRACKEEIKSITKLECWTL
ADLPQGVKPIGLKWVFKLKRNSDGSINKYKARLVAKGYVQQYGVDYDEVFAPVARIETIRLLISLAASHGWEIHHLDVKT
AFLHGDLKEIVYVTQPEGFEIEGYEGKVYKLNKALYGLKQAPRAWNDKLNKILLELKFIRCLKEPSVYHKRVKGDLLVVA
VYVDDLFVTGTNMRVITDFKKEMANTFEMSDLGKLSYYLGIEVCQHDKGITLNQNRYALKILEETGMKDSNPVQIPMDAG
LKLEKSEKEKEIEATSYRKTVGCFRYLLHTRPDLAYCVGVLSRYMQSPRESHGVALKQCLRYLRGSMSYGLTFERSESHA
SKLIGYSDSSYNVDPDDGRSTTGHIVYLGKSPITWCSQKQETVALSSCEAEFMAGTKAARQAIWLQDLLAEIMGVAGEKV
VIRIDNQSAIALTRNPVFHGRSKHIHTRYHFIRECVEKGLIMVEHVPGSEQKADILTKALARIKYKEMRELIGVHEVKKE
VFKFREE
>Copia-108_AA#LTR/Copia 77-4083  [Aedes aegypti]
MEKDSDAVRVPLFDGSNYPSWKFRMLVLLEEHEMTECIEEEVADVERLQVSAADNESVKATKLVALEARRKKDRKCKSIL
ISRISDSQLEYVQDQPTPRQIWLALQRVFERRSIASRLHLKKKMLTLRHEGGDLQEHFLKFDRLVREYKSTGAVIEDIDV
VCHLLITLGPEFATVVTAIETMPEDKLTIEFVKCRLLDEEIKCRGKEFDSFGVKREPSAFAGKPTGAVRKWKCFSCQKVG
HKAAECPERQKRKKEDNKKSSANVSEEKAGGICFAASGGVVREEKVLWIADSGASEHMSNNKNLFEELVPLKDPVEIAVA
LNGKSAIAKCSGKIKMIAVSGSKKRECTLENVLYAPDLRCNLFSIRKVEMAGMEIVFKDGSVKVRKDSEVVACGRRRGLQ
YEMDFYAESTSASSLYSCGKLQKCNELWHRRYGHLSEKNLELIVKKNMVTGFEKCAVDDNGEMFCEPCIEAKQTRKPFVS
SSEKRASRVLELIHTDVCGPVTPVGHDGSRYYVSFIDDWSRFTIVYTIQSKDQVLGCFKLYEAMVTAKFGRKIARVRSDN
GGEYRNEQFEKFCQQKGIQMECTVPYSPEQNGISERMNRTLVEKARSMLIGSGVDKVFWCEAVETAAYLVNRSPASALKE
GKTPFELWEGRKPNISGMRVWGSPAFCHVPKENRKKLDSKAWKGIFLGYHCNGYRIWDPKRKKVVVQRDVIIDESRGTSK
EVPALGKTSTDNEMIRITHDEEVGDTDFGNTEVPGDSHETSFEDCDEGSDSDSAADEDSAGAVEAPSDQIRTSGRRREPP
AWHRDYDMNCAYAMSATNFVENFPDTLKEMRKRDDWPYWKAAVEEEMNSHRKNNTWSICKLPEGRKAVSSKWVFKLKRGE
NGAVDRYKARLVARGFSQRFGYDYTETYSPVARMDTVRTVLAVANQERLKVHQMDVKTAFLNGNLEEEIFMTLPEGSEGE
LNDVCRLNRSLYGLKQASRAWNERFHRFVTKLGFRQSENDRCLYVRGEGSQRVFLLLYVDDILIVCRNLKEIEKVKKRLA
QEFEMSDMGPVGNFLGMSIDRNEEQRILRISQRCYLESLLCRFGMENCKPAATPMETRLQLKKGDEANKTSKPYRELVGC
LAYVAQCSRPDLCASVNFFSQYQSCPTDEHWNFLKRVLRYVRGTLDIVLEFHGSDKAEPFVVYSDSDWGNDVNDRRSITG
CVFRVFGGTTAWLTRKQQTVALSSTEAEFVALCTAACEGIWLRRLLEDLGVVIEGPVKHFEDNQSCIKVTEEPRDSRRLK
HVDVKFNFVRELVKDKRIDIRYIPSEKQLADIMTKGLASTAFNRLREALGLQKLSR
>Copia-107_Mad#LTR/Copia 60-4187  [Malus x domestica]
MAESTNSLPLPTPVTINAAAQLPLKLTPTNFPSWRAQFNALLLGYDLMGYIDGSKPCPAASSAVSYTFWIRQDQLLLHAI
LASVSEQIISLISSSKTSKEAWDKLTKLYANKTRSRVLNLKERLTLMRRDTQPVSVFLQAIKAIIDELAIIDSPLSDDDV
VLHVLNGVGPAFKEIAAVVRASDTSISFENLYDKLIEHETFLQRDAPPAAVTPMTALVAQAPRSSQRDFRXTQASQQRPT
NTTYNSHRANNHNSNNRRSGTGYRGFCQWCGTQGHSAKRCPQLSSAPPTVNHTTIRPSTSSPWLLDSGASHHVTSDSRNI
PDSTTYDGPDQIIIGNGTGLSITHVGSTSLSSSSTTPFHLNDVLCVPSISRNIISIAKFNRQNATSIEFFPDFFLVKDLN
TGAALLRGPNKDDTYEWPCLMPQKQVMSSVMDSSNVWHRRLGHPNHRTFLQIQRTSSIPMSSTPSVCTSCHCNKSHKLPF
GHSTLVSKRPLELIYSDVWGPAPYLSTDGFSYYVIFVDHFTKYIWFYPMKHKSDVFSIFATFKALVENYFHTKIITFYSD
GGGEYVKLKHFLSTNGITHLTTPPHTPEHNGVTERRHRHVVETGLTLLHQASLPLTYWSYAFKTAVYLINRMPTHVLNNI
SPYKALFGDLPNYIKLRAFGCLCFPWLRPYNSNKLLPRSRPCLFLGYSSTQSAYLCLDLPSRRMFVSRHVRFDENTFPFS
SRDSVIPPVPSPDSTAWSAVTPAAISIPAHIAEVPPVPSHTSSQHAATHTSSEVSELCLSPAPSPSATAHPPSPHHLIPT
SIIPLPPPPPPNNFNHHPMTTRAKNNIFKPKQLCTATKHPLPSPIEPTCVSQAIKDPLWRAAMSDEFNALIRNGTWELVP
PQPSQNLIGCKWVFRIKRHSDGSIDRYKARLVAKGFHQRPGVDFLDTFSPVVKPTTIRIVLHLALTHGWPLRQLDVNNAF
LHGSLSEDVYMVQPPGFGESTVPTHVCKLRKALYGLKQAPRSWYKELSTFLLNQGFVNAISDTSLFIFRQDNDVIFLLVY
VDDLVLTGNNTRLLSTFIQALANRFSVKDLGNLHYFLGVEVIPTTTGLFLSQHKYIHDLLAKAKMDGAKDVTTPMATSTP
LILSDGSPLTDATTFRQLVGGLQYLSLTRPDISFTVNKLSQFMHRPTESHWQALKRLLRYLKGTIFHGILFRRSASSRLY
AFSDADWAGDRDDRKSTTGYVVYLGGNLISWSSRKQRSVARSSTEAEYRAIASTTAELAWLQSLLHELGVSSMDKPTVSC
DNIGATFYSVNPVLHSRMKHIELDFQFVRDRVNRGLLQVSHVSTQDQLADVLTKALPRPRFQLLRSKIGVSDGTTVLRGR
KRESSSQHIDCLSTSL
>Copia-109_BRa_gag#LTR/Copia 818-1801  [Brassica rapa]
MANMEKLQFPALDITGTNYISWVTNVELHLESLGLSETVKEINTSTPQEKAKSVIFLRRHLDESIIYDYANMRDPKELWK
SLKDRFDHQKDITLPLARDEWQSLRFQDFDKVMNYNSAVLGIVAKLRYCGETITESQMLEKTYTTFHKSHITLQQQYRLR
GYTKFSELIVALLIAEKNNELLIKNHMTRPTGSKPFPEANALDAKKPVKENKAYWGRGRGRQNYRGRGRKYNPQDRKSFQ
WVRSEQTPKGKEHQGNTSQKREEACFRCGTKGHWSRLCRTPAHLCALYKESVKGKEKEVNFAEHSEGTTHLDASDFVNDF
EETAITEA
>Copia-115_SB#LTR/Copia 39-4401 via tfasty with Copia-30_SB, 3 frameshifts. [Sorghum bicolor]
MSSPTKTRGRSPSLKEKGDGSGTKSPTAPSKSPARRSRTRARRAREVVIERIIREGGGSGTWPQLTRTNYYEWSLRMKLK
LQARRLWDAIEFDDVEFEDDRNALDAICSAVPGDLVPVLATKATAKEAWDAIKTIRIGDERVRTAAAQNFRTEYENISLR
DGEPVEEFALRLTSMVQRLATLGDPEPEVKAVKKYLRAARTRYKQLVISIESLLDISLMTIEEVTSRLKAAEDVEADPVQ
AEGGKLLLTEEQWIERYKKKDTSSSRGGSSSGGRGKGRGKGRGRGGGRNGDARNSNRPPPDTSCPRCNKMGHWSRDCPDK
KKEEQAHVAQDDEPTLMLAVGVSLEQEPESLFVPPAPLPRRADGAAVLHFVEKKVCVDLDDADNRDSKRWIVDSGASNHM
TGCRAAFSDLDTGVTGSVRFGDDSLARIHGIGTVLFSCKNGEHRELSNVYYLPCLTANIISVGQLDEVGFQVLIEHGIMR
IRDEQRRLLARIPRSPGRLYVLDVTIARPVCLAARSEEDAWRWHCRFGHTNFTALRKMGREGLVRGLPLLSQVEQVCDAC
LAGKHRRAPFPLQAQRRQLLHGDLCGPITPPTPSGNRYILLLVDDYSRHMWICQLPTKDAAPAAIKRVQAAAERKTGKKL
CALRTDRGGEFTAAHFNEYCAELGVRRELTAPHSPQQNGVVERRNQMVVGMARSMLKAKELPGVFWGEAVTTAVYILNRT
STKGLSGGTPYQHLNGSTPAVHHLRTFGCVAHVKVTTPNQRKLDDRSRRMIFVGYEPGSAAYRVYNPSTRRVHISRDVVF
DEAAQWTWQGDHNGKPADFIIEDGYTDAPERVIVTTTASSPGSSSAGSPVPPGGSPPSPWAPTPGVTTPGAATPPATTPP
VASPFTSSPAGGDSEFLDADHDDAPLRYRSIDAVLGPSEAPGRVERALAEEHLMLASEAEPTTYDEAARLECWRHAMLDE
MTAIEANGTWQLVDPPPRVRPIGLKWVYKAKKDAADNVSKYKARLVAKGYVQQHGIDFDEVFAPVARLESVRLLLAHAAG
EGWQVRHMDVKSAFLNGDLLEEVFVQQPPGFVLAGHEHKVLRLVKALYGLRQAPRAWYAKLDAALTALGFRRSGSEYAVY
LRGVGAHRLIVGVYVDDLVITGSSTVDIAQFKEEMKGTFQMSDLGLLHYYLGLEVAQTADGITVCQSAYAAKILDSAGMR
GCNPCATPMEARLKLSKSSAAPAVDQTMYRSIVGSLRYLVNSRPDLAYSVGYISRFMEKPTTEHLAAVKRVLRYVAGTLN
FGCQYKRKTGDLQLRAFSDSDHAGDVDTRKSTTGVFFFLGENLITWQSQKQKVVALSSCEAEYIAATTAVCQGVWLARLL
AELRGEQTNTFQLMMDNQSAIMLSKNPVFHDRSKHIDVRYHYIRECVEEGRVQIESVVTQEQLADILTKPLGRDQFVQLR
SRIGLVNVKQTSKA
>Copia-115_BRa#LTR/Copia 66-4054  [Brassica rapa]
MLTTTNYTVWAMRMKIMLKLHKVWEVVETGSDEVEKNIMATALLFQAIPETLILQVGDLDSAKKIWDAVKVRHVGADRVR
EARLQTLKAEFDRLKMKDNDTIDEFVGKLTEISAKSAALGENIDEPKLVKKFLSSLPSKKYIHIVASLEQLLDLNTSNFE
DIIGRLKAYEERINAEEEETQEQNKLMYANMESQSHREYHGEYRGRGRGGRYSNRGRGRGRSYWENRDASRVVCYRCDKT
GHFAATCPDRLLKLQETQEGKEEETQEADGLMMHEVVYLNEKNIKPKEFESSMDGDRIWYLDNGASNHMTGNRDYFKQID
ETITGKVRFGDDSRIDIKGKGSILFISQGGEKKLLADVYFIPALRSNIISLGQATESGCEVNMKGDLLTLHDKDEKLITR
ANRSRNRLYKVIMDIADEKCLKLDIEDESARWHARLGHIGVETMRLMIRKELVLGMPDISIERETCESCLLGKHARQVFP
KSTSFRAEEPLELIHGDLCGPITPATPAKNRYIFVLVDDHTRYMWTILLSEKSDAFNKFKVFKSMVEQQTKKNIETFRTD
RGGEFTSLEFQKFCEESGIQRHLTAPYTPQQNGVVERRNRTLLEMTRTILKHMRMPNYLWGEAIRHATYLINRVGTRSLQ
SQTPYEVLKGKKPSVKHLRVFGCIGYTKAETPHLRKLDDRTRTLVHLGTEPGSKAYRMFDPTYRRVVVSRDVIFDENKGW
KWSKTTANEEEFSITYGNFGNQGIREDETEKEAQNQDTNAVNNDEVVEEEESEDETEEVQLRRSTRATKTPSYLSDYILI
GEEEGERLLLLINEEPWDYEEAVKEKVWRKACDDEIESIIKNKTWDLVDLPNGAKAIGLKWVFKIKCNSDGSINKYKSRL
VAKGYIQRHGVDFEEVFAPVARIETVRFIIGLAASNGWEIHHLDVKTAFLHGELKEDVYVKQPEGFVIEGSENKVYKLKK
ALYGLRQAPRAWNEKLNNVLERLQFVKCSKEPSLYRKRQDESLLLVAVYVDDLLVTGTDRDMIIEFKREMSKVFEMSDLG
LLTYYLGIEVRQHEEGITLKQESYALKILQETGMEECNAVHIPMDTGLVLSKAQKEASVDETEFRKYIGCLRYLLHTRPD
LAFSVGMLSRYMHQPKTSHRAALKQVLRYLKGTTNFGLTFKRGNKMELVGYCDSSHNIDEDDGRSTTGHIFYLNNCSITW
CSQKQETVALSSCEAEFMAATEAAKQAIWLQELLGEITEPVYDRVKLFIDNKSAIALTKNPVFHGRSKHIHKRYHFIREC
VEDEQVDVQHIPGVDQKADILTKALGRIKFKEMRELVGIQEVNFKLKGDN
>Copia-133_SB#LTR/Copia 116-4321 via tfasty with Copia-21_SB, 2 stopcodons. After  removal of insertion pos 554-1674. [Sorghum bicolor]
MGSSGKDSEALERAWNQAAGNLLWPMLTRTNYQEWSAHVKCNLEAMYLWDAVEPEDVTKVERRRDRLALGAMMKGVPTEM
HSMLLNKKTAKEAWEGIKAMRLGAERVKEVNAEKLLGEFEAITFKAGETIDEFAVRISRLATDLRGxGEKSVDDARVVKK
FLRVVLPRYNQVAVTIEMFCNLKELTLEELVGRLRAAEDRFDPSADQLSEKMPKLLLFEEEWIAKNKARMVDQSSSSGGK
GGGGKHYAKKEKTGARDSRPRLTSMGTPRRRGKCKKCGIYGHWAKECKTPAKEERQEAAHAVLGENDSALLVAQVCDVVR
RNPTSVQQVFLNQDRVFPADYNEGSWVLDTGATNHMTGCRVSLTELDEIVGGAVRFGDGSTVQIRRIGAVTIAGKNHDHR
VLTEVYYIPSLQCNIVSLGQLEENGCRVEIDRGVLQVFERRQGVIQERALIKAERRNRLYVMKVNLTTPICLVSKISEEA
WLWHARYGHQNFRSLRDLGSKKMVIGIPRIQHEDQVCDGCALGKHHRAPFPRASTYRASERLDLVHGDLCGHISPPTPGG
KSFFLLIVDDYSRYMWLELLTTKAEAFQCFRKIKSIAEPESGRQLKVFRTDRGGEFNSTVFTAFCSKQGIKRNTTAPYTP
QQNGVVERRNQTIVEMARCLLKSMKVPAKFWGEAVKVAVHILNRSPTKSLDQKTPFEAWFGRKPGVQHLRTFGCKAYAKV
VGPGLTKLADRSVPGVFLGYEPGTKAYRVYDPIHNKLIVSRDVIFDEKQGWNWEEEERSAAGVPEGFTVCWPEDTDENPT
IESSSGSDQQPPSSPAPSIPSPGGGSVGSPHTPQASTGSTHNQIQWATPPTGESVDSEGVPQRFRTIASLLEDTEEVQGF
EYNGVCLVAAEEPRSVDEALKESCWREAMQAEMQAIEANRTWEVSELPTTHKAIGLKWVFKIKKDPEGKIVKHKARLVVK
GYAQQQGVDFDEVFAPVARIETVRVLLALAAQGGSEVHHMDVKSAFLNGDLSDTVFVKQPPGFIIGQGDKVLKLRKALYG
LRxAPRAWNSKLDKELIALGFVRSKLEHAVYRRGGSNSFLLVGVYVDDLVISGPSVSDIVQFKQEMMMKFSMSDLGLLSY
YLGIEVKQEDDQITLSQSSYVKKVLETVGMRNCNSSPTPMESRLKLCKTKEGDDIVEPTSYRSIVGSLRYIVNTRPDLAF
AVGVISRYMEAPNKVHxTAVKHVLRYQKGTMDYGCVYKRDTELKPFLIGFSDSDFAGDTEDRKSTTGVVYFLGKNLVTWA
SQKQKVVALSSCEAEYVAAPSAACQGVWLSRLIGDLMETKETPVRLLMDNMSAIALSKNPVHHNRSKHIDTKYHFIRECI
EEGKVEVDHVGTDNQLADIFTKALGRVRFQELREALGVVKVQ
>PREM2_ZM_pol#LTR/Copia 2759-6001 [Zea mays]
VYASGGSSWILDSGCTNHMTGEKRMFSSYEKNQDPQRAITFGDGNQGLVKGLGKIAISPDHSISNVFLVDSLDYNLLSVS
QLCQMGYNCLFTDVGVTVFRRSDDSIAFKGVLEGQLYLVDFDRAELDTCLIAKTNMGWLWHRRLAHVGMKNLHKLLKGEH
ILGLTNVHFEKDRICSACQAGKQVGTHHPHKNIMTTDRPLELLHMDLFGPIAYISIGGSKYCLVIVDDYSRFTWVFFLQE
KSQTQETLKGFLRRAQNEFGLRIKKIRSDNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVERKNRTLLDMARTMLD
EYKTPDRFWAEAVNTACYAINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFILVKRGRKSKFAPKTVEGFLLGYDS
NTRAYRVFNKSTGLVEVSCDVVFDETNGSQVEQVDLDEIGEEEAPCIALRNMSIGDVCPKESEEPPNAQDQPSSSMQASP
PTQNEDEAQVDEEEDQANEPPQDDGNDQGGDANDQDKEDEQEQRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHF
CEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRPNQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGY
SQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSKALYGL
KQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYF
LGFQVKQLQEGTFISQTKYTQDILSKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSV
CMCARFQADPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQ
NSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDI
EISYINTKDQLADIFTKPLDEQTFTKLRHELNILDSRNFFC
>PDR1#LTR/Copia 269-3603 (fragment) via tfasty with ATCopia17, 1 frameshift and 5 stopcodons. [Pisum sativum]
IPKNAWILDSGATNHMTFDSTLLCSYTTPSSIPYITVADGSHACVVGTGNIDLQPPFQLQSVLHVPTLSHNLISIHKLTR
DLNCKVIFSMSHCVFQDLTTGQTIGIAKEKEGYTTSLMTIQRCCPPVSSLSLPLQPHKCWLQHKRLGHPPFYIIKSMFPS
LFLHHSVESFKCDVCQLAKHNRVSFPSSFNKSDEPFDLIHSDVWGPAPTSNIFGAKWFVSFIDDCTRVTWIFLMNTKSEV
PQIFIQFYNMAQTQFGKGIKRIRSDNGKEYVNHTFSNFTSKHDILHEFTCVDTPQQNGVAERKNRHLLEVARSLLFQMSV
PTSYWGEAILTAAYLINRVPSxVLGNKSPVQFMLSRFPFVPILHTLESRIFGCVAFVHVHKQYRNKLDPRAVRCIFLGYA
PNKRGYKCYHPPSRKFFVSKDVTFHENVSYFTRSQSQRENISDLESESKSESEFLILGPSLPRTPISVPSLEPELSPSLS
PSSTPESESVSVPGPSRPSVLQESAPPAPTLVYQRRSKPDLLQKQIQSPEPExVLKMIPLVMIVPFLILVTLIQLIYPLL
xGRIKDLVPPYIDTLSLNMSPxHLSTQYQSFIAAVDSVKIPSSVEEALQNRNxIQAMDEEMRALEKNGTWEIIERKRDKS
PVGCRWIYTVKYKSDGTLDRYKARLVAKGYTQTYGIDYEETFAPVAKMNTVRILLSLAASCGWELQRFDVKNAFLHGDLE
EEVYMEIPPGVGITNGANKVYKLKKALYGLKQSPRAWFGRFTKAMMCLDYKQTQGDHTLFFKHSQGGKLTVLLVYVDDII
VTGDDLIERHFLKEKLSAEFEMKDLGQLKYFLRIEVAYSKQGIFISQRKYVLDLLQETGKLGCKPASVPIEQNHRISFEE
ESDKVDKGQYQRLVGKLIYLAHTRPDLAYAVSVVSQFMHDPRVRHLQAVDRVLQYLKATPGRGLLFKRGGNLTMETYTDA
DYAGSVSDRRSTSGYCTFLCGNLVAWKSKKQSVVARSSAEAEFRAMALGICELLWMKQILEDLKIQCEGPMTLFCDNKSA
ISIAHNPVQHDRTKHIEIDRHFIKDKLDSGLITTSYVPSRHQLADVLTKDLPTERFRQLTCKLGMIDIDSPA
>Retrofit3#LTR/Copia 43-4422  [Oryza sativa]
MASSSSTAATNPFQGHPISEKLGKANHALWKVQVSAAVRGARLQGHLTGATKRPPAEIAVTKDGATKKEPNPAHEDWEAT
DQQVLGYLLSSLTREVLMQVATCDTAAEVWSAIEQMYSTHTRARAINTRFALTNTKKGNMSTPEYFAKMKSLGDEMATAG
GRPIDEEELIQYIITGLGEGYSEVVSAVCARVEPISVSDLYSQVLNFEARQAIYRGAQEVTVNVANRGGFSHGGRGNSNG
GQGGSRGGGGGGGHGRGNGGGGHGRGRTPGGVDKRPICQVCFKRGHTAADCWYRYDEDYVPDAKHVAAAAVNSYGVDTNW
YIDTGATDHVTGELDKLTMKEKYNGGEQIHTASGAGMDISHIGHAIVHNPNSRNIHLRNVLYVPQAKKNLVSVHRLVNDN
SAFLELHRDYFFLKDQITRKTLLKGRSWRRLYPLPHSSLKQAYSAIKLSLDRWHHRLGHPSITTVKQVVNKFSLPCSDLS
SESVCNACQQAKSHQLPFPISSSVSKHPLELVFSDVWGPAPESVGRKKYYVSFIDDFSKFTWIYLIQHKSQVFDKFQEFQ
VMVERQFDRKILAMQTDWGGEYQSLNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQ
VATYLINRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGR
IYISRDVVFDENIFPFTELHANAGARLRSEIDILTPELLGPIRSVGNEQCMHPVNNPLSADVSAALSNRANEPHRDGAVH
PADAEDPPATPPLDASSGPEPDRVVHHSPAATSSGRHPGPTPGSVPRGAASSLAEETAEDSVSQAVQEQESQVVQEQEQS
SPAQEHAQAVTDETNTLQHADVTDTGSEAPAGPRTRLQSGVRKEKVYTDGTIKYKHSWFTASGEPTNDLEALKDKNWKLA
MDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILS
LAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPD
TSLFFLNKGDITMFVLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKK
VGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRY
LKQCTRLGLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESEYKAIANATAEIMW
VQTLLAELEIKSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVSTNDQVADGFTKPLSVRL
LENFKSNLNLVRSGLREGVS
>RLG_scMaximus_1_6_env#LTR/Copia 6122-7624  [Saccharum hybrid cultivar]
MVRCKNAGGAPGDGDDSPPRRSEIARGKRIKILARKKKTLTEAEIAQAVADAAEQAERGGRSSGIRIGERRFHLEGRQLG
TEATEGTKDTGATEGMSVDPPPETTEAPEAPEATEDTEEQPAQSPPRRRSTRARTQVTPRPEGQRHGARPPPRARGSPPV
EHFDLRGATARQVQGLRFVEVSRWFPPVRDPRASEGFYTPLQEDFYRALVDNGIAFRPQRVCRLESLVEVVGEQLRPHLS
FLPGLSDLLGRTGAYCGTWVREFYASLWIDSAHDFIHFAFRGRDHLLSQTQFDIWDFILSEMEDTIAEGFKGNRQLPYAH
WICFIIRSSIQLPAEIQAEISDTTTAFPEYDIRQLWASVTRDQAPVPGQRVRPEVPETAAEQDATVDELAEAELADLDAQ
PADLLEDVTSDSTDEDYQPIPRYRSPRSHDHEAGGSGSASRTDPAMVAILERLTQAQEQQQQQIQRQAQDTAAALAQIQA
RQDEFQRQQLEIQRQQVEMQR
>RLG_scMaximus_1_5_gag#LTR/Copia 740-2383  [Saccharum hybrid cultivar]
MIVQESTSESDIDDESLALMVRRTTKMLKKLNKSGIKFDGKKKKFFTSTKRKPISEMDCFNCGELGHLAHQCPKPPKDKN
KNKYKGKKDDSSEEEDDKRKNKPYKKKDGKKREFYKKKKGGKAYIVGDWLTDIESSCESSGDESDDEKEKIAALVVGPSP
SSSTSSSPSSPPSSPSSSTSHLCLMAKGDRKVQNSDSDDSDSDDEYDAPSYDELVKLLNKYSKIIRRTRNENDELQHENE
TLSSKLESAHETRDELIDQNETMYSSLKELKTSNKELRDKHDKIEKKHGELMTRLNSLKEEYTTLKINYDTLIVANELAL
ETHDATNQIVKINIATSCDDLIIENLEQGSSGKGKSVVEADDYDEYVKLKSENEMLKVENKKLLALEKQASNESLIEENK
KLKQEKEHLKTGLSKFTRGQHLQSELLMNTVIKLDRSGIGYLANQEKKVKTQQQQSKSKPKPKRCVECGQEGHFAHECKT
PPPQPLPKHARPFAFNAHYMLRNDSSGKMKVMFLGPPNKNRPKKIWVAKSLVEKVKGPSQVWVPKQKA
>PCretro5#LTR/Copia 98-4630  [Phanerochaete chrysosporium]
MPSKRSDTTAPAVCSGKPHIFDKLETEDRWYKSTGHAGWMPCELQPCPHRYSQPIGVVEDASWQVAVDPSQLKLFVARLS
GRQPSPPRSASIQEVPEAEATAAPTLPPPSRSSERSVAEEELEYLDATSSPVARPSVSSSSIIRAFNSVPKLALEGSNYR
LWHQRIVVAARGVQCDDLLEEPDVPATRKREADALLSAILDTLPDSVFMSVSSTADVPADVMSAMKVRYGVSTAVSDAAA
QRKLFSMTCKDDRKLQAHLDSMLAVREQIIESGTSVSDKVFTDAIIASLPDSYKPIVNAYSATLLLDAARTGTPRPARSH
ELIPLLRAEAHSRYTVARGGAKDAVPTAASADARGQRGGRGKGKGRSAQQQQRGGNSANQSSREGEEVTCYKCQGKGHTK
KVCPSKNYAKRPEPAANAAQVTSAPAPASASAPAPAPAAKIVEVEDAWAASALAPESDAPPEREDTVDEALVSQSTDPVD
IYDSGATHHMTPFRHLLYNYRPIPARTVRAAGKSHFAATGVGDMKLLMPNGNSWMRITLRDVYFAESMAATLVSLGKFDD
AGYRAVIGGGYLRIMRGDAQFAAIPKIRGLYRYYHSGEGLALAAFSASLSLYQLHQHLGHLSYGYIKKLVASKAIQGLQL
DPARRTEDECSVCMRAKAARAPIAAKRSSPLAATFGEHLHLDVWGPAPVRTINHCRYALVMVDDHSRWLEEPLLRSKDEA
FARFRDFVALIRTQSGAQLKVVSSDRGGEFTSHEFSEFLSRNGVVRRLTVHDTPEHNGVAERVHGTIFNMVRALLISSGL
PRTLWGEAVRHAVWLYNRTPHAAIDFRTPYEVRFGSPPDLSGLKPFGAVCFVRNLSAGKLDARAVECRWLGFDPTSNGSR
IYWPTSHKVSVERDIKFSSREVPLLEGEDYSLDPAPDSDSDNEQHPDAASDTSGTFPSDPPDDEPLATPRRSARLAQKRL
AAHIIDLSHSELEATLEAAQSEALGHDPRSYAEAMRSPDAPAWQEAMDEEIRRLEQHCAWVYETAPSGAHVVGSKWVYRT
KRDAQNAITGYRARLVGQGFTQIDGVDFFSDDTFAPVAKMASQRANAALAAQRDYEMAQIDIKSAFLYGPLKDDEVIYLR
PPPGVKLQGLKTGQVLRLRVALYGLKQAGRRWALFLREIIADIGLTRSEQDHAVFYRHLPGNHVAIISSHVDDLTLIAPD
QKTIEDIDRRIRARVEATPLQPLNWLLGIEIKRDRAKRTVSFSQRAYIDQIISRYGFEDIKPLAAPMDPHLVLSKEDCPS
TAAEVAEMRHKPYRQALGALMYAAIATRPDIAYAVNQLARFAENPGMKHWNALRRVYAYLKGTRDLSLVLGGDARDGPLV
GYTDADGMSTEGRQAVSGYAFLIGGAVSWSSKRQEIVALSTSEAEYVALTHAAKEALWLRNYLHEVWQMPLQPMQLYSDN
QSAIALARDDRYHARSKHIDIRYHFIRYHIEHGNITVTYCPTEDMVADTLTKALPSMKAKHFASSLGLAKA
>Copia_MT_p2#LTR/Copia 5848-8814 (no matches to anything) [Medicago truncatula]
MASSSSAGGSSSNMDIDTPAYDIKGRTMSIEEWELIIQAENPVDFASLTHHGCDLVRFYKKQKLMSYFSLLNGPTYEVLV
RQFWVRASVFDIEAAKQEEAQLILVDPTLKGKTREEMGLLSFTGTEIRSNVMGIPVTXNEQVIAQAMRRDASGKYFGEEI
PNPRTSXWKEIVNETIYGSKDAKPYSTLSMEKKMLLKIQNENIFPKGGGSDQPSLGHKVFLHHTITQETTMNVPKYMFKY
MIKELKKSQMENRKFVPYGRLLSVIFQEGGLLSALKDVGIYDNQKLGAVTGKIINAATLVKMKLIPANARKKLDTDMHES
DAISDLVTHHIPICKKDPLDVQRAYILDFYKTYNKKISLKDVPEEMYGGDLPVAKGRKSKKKQITKEEYLAEDATEEGAQ
KHKKAKKEKSAMSTILEEVEDLDDVPLIRKRTRSAQETAEQPASEQTGSEQAASEKPPSPKKKREAALQTIKRKRSXRNL
KTAEGRRAEMLEELEENWDEDSSPKKAKRTITSEPIVMPSFEMTEELKQYAREYSASKIAEKKRMKELYEKERDERLKAA
GYVPTPDIAALASELEQETVQYGATLLSQALKNKQASGATSSEPASKAPEAVHPEAHSSGNPSKAPTNTQIPSLPSSPSS
SSTESDDQPLSQHIDKLLKTKPTKLTEFGTLDYERTQIEFSKNRIKLCEKFNLPTTHPLYPDIPEPVSVQQPEPNQTNPP
NNQTPQKASEVVSEATTSETPQQQESSTLHKLEKHLGGEMQPTPTKASKTVPGKTVLENQQTQTIPEQTVPEQTASEQVA
PDQTTSEQIASDQTTEPEQQPEPPIIDLTSDQPSTSNTTQTEPSPIPDHILESEYIEEQLIRLSDEIQALILRRTVPVPP
IHYYDQWMDLKKSFDELLDQLRTKCVSSHSAMLKKLLDDMHEAAKEKELNXVPLLDITPFYPEEEYITRAARIHAGYKRR
MREKDELLXKKDDQIKYLLEQLYKQAQP
>Copia-134_AA#LTR/Copia 78-4279 via tfasty with Copia-38_CQ, 1 frameshift. [Aedes aegypti]
MANPNAGSSASGDGVLVRQQQQSFNTQGHPHIERLVGRENWRTWKFAVKTYLEVEDLWEAVEPTPNEDGTLPAVDPRKDR
IARGKIILFLDPVNFIHVEEVKTAAEVWRKLSNTFEDTGLTRQWCLLHKLITTNLVSCGSMEAYVNRMISTAHQLIGIGF
PLDDRWIGMLLLAGLPPEYRPMVMGLENSGIQITGDIIKTKLLQETVLAEPTTEPAFVSRHDSKSKHGKVTKATTTQGKG
PQCRRCEKFGHIARYCNAKEPAQRNKSDKKGDAFCTVLSVREAGEDDEWYFDSGSVKHLTKNEMLLEHMRPADGSIYAAN
KGIMKIVAEGSAKLRPTCNPDTIDVTNVELIPELAVNLLSVGKIVDQGHSVTFTKTGCKVINPTGKIIATGQRSNGLFKL
EQKPSKALACPSPETADLWHKRMGHLASRNLVRLRNGMVDGVRFHGNDLGNCKTCAMGKQTRLPFDHEGSRASEVLELVH
SDIAGPMEENSLGGSRYYLSFIDDKTRKVFVYFLRTKSKEEVLQKFKDFHSMAERQTGKKLKVLRTDNGWEYKNWNFENY
LKQLGVRHQTTVEYTPEQNGLAERVNRTVVERARCMLYEAKLAKPFWAEAVAAAVYLINRSPTKGTETTPEEAWTGREPN
LSHIRTFGTTVMSHVPKQKRKKWDQKADECILTGYDDETKAYRLYNLKSKQIFKSRDVTFIDEGIIKRDNTPAGTTDDQR
RSYVRLEFSENVLDEPLPTPADQIDAAQANDVNSSDESFQDADDTEADSALPPHQSSSTPVALRRSGRERFLSGKYKDFY
IVNKGLPSTKFTDSKDDCPMPSTSVAEDSVALPSCSNQRLASVVTQQRLMLCDRGRLPQGKYLNDSDNECSDTGADFSET
FLDDPVTHNEALSRDDADHWKQAMIDEYDALISNETWTLTDLPEGRKAIKCKWVYRTKLDVNGNVDRYKARLVIKGYSQR
KGVDYEDTYSPVVRYSSLRYLFALAARLGLQVDQMDAVTAFLQGDLAEEIYMEQPPCFVDGGKKSKVCRLNKALYGLKQS
SRVWNSKLDAALRKFGLESTVYDPCVYYRISGGKVLFVAVYVDDVLIFSNCKRWKNEIKGKLNQEFKMNDIGPAKYALGI
RITRTKEAVSLDQEAYIDAMLDRFQMAKCNPVTTPMNTSEKLTKEMCPSTAEEEERMRDVPYREAVGCLMYLAQSTRPDI
CYAVNVLSRFNTNPGEQHWNAVKHLLRYVRGTSKFRLIYHRSKDSTIDGFSDADWASDHDDRKSTTGYVFTAQGGAISWC
CKRQQTVALSTCEAEYMALSAAVQEALWWKRLRGLFEKEEAIVIHCDNQSAISVAKNGGYQPRTKHIDIRHHFIRDAWEK
GEVKVAYIGTDKQIADGLTKPLPAVKMKICREVMGLQNPMG
>COPIO_pol#LTR/Copia 2196-5414 via tfasty with Copia3_HV_2575-5959, 1 frameshift. [Oryza sativa]
EYVSGGRSWVIDSGCTNHMTGEESMFSSLDPNGTSQDNIVFGDDGKGKVMGLGKIAISNDLSIANVLLVKSLNYNLLSVS
QLCSMGYNCLFTDVDVTVYRRNDSSVVFKGVLKGKLYLVDFSSSKAKHETCLVAKSNTGWLWHRRLAHVGMRNLHKLLKH
DHILGLTNVQFEKDRVCSACQAGKQIGAHHPVKNVMTTTRPLELLHMDLFGPIAYLSIGGNKYGLVIVDDFSRFTWVFFL
HDKSETQAIFKKFARRAQNEFDLKIKNIRSDNGKEFKNTCIESFLDEEGIKHEFSAPYSPQQNGVAERKNRTLIEMARTM
LDEYKTSDRFWAEAVNTACHAINRLYLHRLLKKTPYELLTGNKPNVSYFRVFGSKCYILNKKARSSKFAPKVDEGFLLGY
GSNECAYRVFNKTSGIVEIARDVTFDETNGSQVEQVDSHVLGEEEDPSEAIKRLALGDVRPREPQQGASSSTQVEPPTST
QADDPSTSSLDQGEEGEQVPPSPINLAHPRIHQSIQRDHPTDNILGDINKGVSTRSRIANFCEHYSFVSSLEPLRVEEAL
NDPDWVMAMQEELNNFTRNEVWTLVERPRQNVIGTKWIFRNKQDEAGVVIRNKARLVAQGFTQIEGLDFGETFAPVARLE
SIRILLAFATTSIFKLYQMDVKSAFLNGPINELVYVEQPPGFEDPKYPNHVYKLHKALYGLKQAPRAWYECLRNFLVKNG
FEIGKADSTLFTKRHDNDIFVCQIYVDDIIFGSTNKSFSEEFSRMMTKRFEMSMMGELKFFLGLQIKQLKEGTFICQTKY
LKDMLKKFGMENAKPIHTPMPSNGHLDLNEQGKDVDQKVYRSIIGSLLYLCASRPDIMLSVCMCARFQAAPKECHLVAVK
RILRYLVHTPNLGLWYPKGARFDLIGYADADYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCC
AQLLWMKQTLRDYGLNVSKIPLLCDNESAIKIANNPVQHSRTKHIDIRHHFLRDHSTRGDIDIQHVRTDKQLADIFTKPL
DEARFCELRSELNILDSRNVA
>PCAL_pol#LTR/Copia 1093-5823 [Candida albicans]
KTGAASINCVMNIHNCSKTTFPVENSHSLNASLNVMNFKGLRFNKYLVYDTGATISVVNNKDILLNVKDATIEVSVADGA
TLEADCIGDLIIRVGIVSITLENTLYLPESSFNLVSLKQIEERGFNVLITKESVIVFNQNVAPTIIASRKNAADLYMGPQ
FSEESLECDFDYDGLADMLSNANQDDKDKSSMNEMSEYQEHDYSSRALINSLTEVDVLDVEISPYGVEQLLPTGDKNDIY
NFHLMSNHMSIEKILLLQKYQGLVLHTSKESLQKIADCKVCLLSNAKQRSHNHHSERKASRRHERLHCDTLGPFRSENNK
WYLTSVIDEHTGYIEGIITKDRKVKDLLIQRLKIWNNRFNDKVAYFRSDNAPEFPQPSDLAEFGIWRETIAAYLPELNGL
AEVVNKLILQQIYRIVVTLGPQILKLIYYVIQYSITMINHTPRRSLKGQTPYGCYYQLSEGNFYRFPFAIDCVVTFSNAI
EKNRYGVTSTKGAPSSIMGAVIGYASDCFSYYVLLKNMRCDIILSPNVRILRSYEVINSYLKNLSTTPMSHIVPMAEGIQ
GRQLGAQYEVRGTYVESEYDNTNDVMHMPKESYSVQPASFTLTTGNSSNEYVINDDPVQITIENPDDFSNPLQLTEESHD
MVSEVKSDENPKPSLHELTPGDNPVSKPPQLGTETSVIGKSKEPITNHTKDAPSIQGRDHKRLESTAQVGLSHQPQTGTP
ASEESKLSGTDHFGVDVVKETVSEDWHTSDYPETSAEDEQQNPSLLANKNRVTEKIDEGENISFPGGDDDSVVINSNVEQ
SNVETEDAGNSPIQDEVSQEGRILNEQTDIVDTVAKVIENEKISPINSLDDHTELATDSGNDSNSTESDIQSKNEISPVI
NEKNTEIIQKHIESILADKRLDEFETYNVDEIENVINDDDIAEANPLPDENNDVQMNESFDNNHSMSRAKKKYTFEKEVN
EKIAGTKHSLDTTDPREAIRVLNTGETKRIEPKKREVPITVKLNKRSQYKSPYVTRSGRTVINPKRYLHAVVNKIDYNDP
GWIKSMNAELEKFRSKDVYEEVPIPTGVKPISMGWVHTEKIDSLKGVVRKSRCVVHGNRQKEKLDYDPFSVSSPVIDLVT
IRLLTIIGCELGMTIQHLDVESAYLNASITHSNPIYVFPPKSVPLKKNHCWLLKRSVYGLKQSGLEWYHTIKRVLEDIGF
TQVLHNDGLFHIEYEEGSVIYLGLYVDDILMVGSSQKVIDNFVDQLRDHFEVKVFGEISNYLGIEFRKTESGYILSQEKF
LKKLLKDFKLDDSYGKNIPWIPNDKYEKVAIIRENVNPENDFEKVPNETLLDPDAKKLYQSGVGLLLWAATNTRPDISVV
VNSLGSKSANPNVHDYEKLIYCLRYIKNSMGYHIEYKRNRLNIPPKSFVIECFSDASFAPGLDRKSISGTLIYVNGNLVQ
WATKKQTVIAQSSAACEMLALNYTMLKAIEIKNHLMDLGFEVGKIHCHQDNQAVIKVLRNNYCHPHRPIDICYKFLRQLI
NDKVFSISYVKTNDNYADCMTKCLSRAKFKAFVEGMIKRLDLEDNQTLIQNAITAE
>CPSC3#LTR/Copia 35-4312  [Oryza sativa]
MSYTPPGRRGGGGGGGSGNGRGGASGSGGGNGADGALLPLVSQGRDASHTARLPVLSRTNYPDWALLMRVNLQAQGLWTA
IDPGYAEFREDRAALSAILQAVPREMLRGLAKHDTAKAAWDAIKTMRVGVDRVREAKEQGFRRQFESMRFKERETPEEFA
MRLTAVVADIRDMGGVMEDEHVNKKLLRVVPKKYKPVAISLEQLLDVKTMALEELVGRLSTVDSYSDDEEGSNGGKLYLT
EEQWQARVKQREQEGSGNSGNKGRGAPGAQNHRGKPGGSPKGKEAATGANSSRDISRVKCFNCDEFGHYARQCRKPRRQR
RGEANLVQAAEEEPTLLMAHVVGVSLAGEATLGRTPSGQEVHLTEKKVILDHEDGGEEEVTGDWFLDTGATNHMTGVRSA
FAELDTGVVGTVKFGDGSVIEIQGRGTVVFRCKNGDHRSLDAVYYIPKLRKNIISVGRLDARGYDAHIWGGVCTLRDPNG
LLLAKVKRDINYLYILKLHIANPVCMAASGGDTAWRWHARFGHLNFQSLRRLAQGNMVRGLPTIDHTDQLCDGCLAGKQR
RLPFPEEAKFRAQEALELVHGDLCGPITPATPGGRKYFLLLVDDMSRHMWIRLLSGKHEAATAIKQFQAGVELESGRKLR
ALRTDRGGEFTSVEFMDYCTDRGMRRELTAPYSPQQNRVVERRNQTVVAAARSMLKAAGLPARFWGEAVVAAVYVLNRSP
TKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVAQRVCVSRDVVFD
ETATWAWRDPEDAATEEEEFTVDFFVSPVAPSVADAGEQTGTPVQAGVSPVSTGVLSSPPRAPNGEFCTPPTSVTPETDG
GPVRYRRVQDILSTTEPVLDFDYSDQCLIATEEPTSFVEAEKHECWRRAMVEELRSVEENQTWSLAELPAGHKAIGLKWV
YKLKKDPSGAIVKHKARLVAKGYVQQQGVDFDEVFAPVARMETVRLLVALAAQKGWEIHHMDVKSAFLNGELEEEVYVVQ
PPGFDDKTNASKVLKLRKALYGLRQAPRAWNAKLDNTLLSLKFNKSATESAVYVRGVGDSKLIVGVYVDDLIITGSQKKE
IDAFKLQMKQRFNMSDLGFLSYYLGMEVVQKGEGIFLSQSAYAGKILEKTGMEGCNPTQVPMEARLKLSKEGTGECVDPT
EYRSIVGSLRYLVNTRPDLAYSVGYVSRFMEKPTSEHWAAVKHILRYISGTIKTGCWYGREEVGNAKLVGFSDSDMAGDL
DDRKSTTGVLFRYGGSLISWQSQKQKVVALSSCEAEYIAATTAACQGIWLSRLIAELLDAEPGQTTLMIDNKSAINLCKN
PVFHDRSKHIDTRYHFIRECVEKKQIAVEYVCSEDQLADLLTKPVGRVRFKELRRKMGLDRTLQD
>Copia-82_Mad#LTR/Copia 36-4106  [Malus x domestica]
MSKGKMNADQGPALKPFDGKDDFTDWQRMMKNVLIQQDLDDALDGEKPENMTEAAWTKVLKKAKSSIEIHLTRSVRSHIT
EKMTAQEAWEKLENVYMGKTVSNKLFLKDELFGLRLEEGGDIEDHVCRFQNCIANLQKVEETYKDDDMAIILLRSLPSSF
KHFRTTLMFGKESLKLEDVIQALQSYAKLDDITESSQGLYAKGKERGREKTKEEKIGNRGRSKSKKKKEKKEGCFECGSA
DHWKRNCKIWKEKKAKMEGSSGSASAVTEHESDGELLSVTSGSKAFTNWILDTGCTFHMCAVREWFDTYKEVSSGEVLMG
DDSSCPVRGIGTVRIRMFDGMIRALGNVRYVPRLRKNLISLGTLDEAGYGYKSKKGRLRVTKGSLVVMRGDLQPNKLYKL
IGTTIVGGAAVSVNQSVEDKTELWHHRLGHISQKGLQELHKQGLLEGVSSCKLDFCEYCVLGKQRKVSFASSSADNRSKE
QLSYIHSDVWGPAPTKSNGGARYFVTFMDDFSRKVWVYFMKQKSEVFAKFKEWKTETENQTGRKIKYLRSDNGGEYTSNE
FADYCKQEGIIRHFTVKKNPQQNGAAERMNRTLMERERSMRFHAGLPDSFWAEAVNHASYLINRSPSTVLGFKSAEEVWS
EKPVDYSKLRVFGCSAYAHIPSDERSKLKPKSTHCIFLGFEKGVKGFKLWDFNNRKKVVSRDVVFDETTMPLNKVESSRE
KTDDAEIEATKIPLISSDEEEAQVEQIEQEAESDGFEEEEEHQHRSPVRNQVEQETGQIEGTPIRQTSQRVRTPTNNPPA
FQRCIALDKPNRNKKKPDRFGFDQDEVNYALNISQGDPTTYREAIASDERDSWISAMTEEMESLYKNSVWELVPKPKDRK
LVGCKWVFRKKEGLHEQDAVRFKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLAMAAQHDMEIEQMDVKTAFLHGDL
EETIFMAQPEGFVEYGKENLVCQLRKSLYGLKQSPRQWYKRFDSFMLKINFRRCLYDCCVYYHVFQDGMIILLLLYVDDM
LIACQDKSRIQDLKKMLSEEFDMKDLGAAQKILGMEIQRDRTAGRIWISQAKYIQKVLEKFNMQEAKVVSTPLAAHFRLS
GQQCPTSEEEQQVMKNVPYANAVGCLMYAMVCTRPDIAQAISVVSRYMANPGKQHWDAVKWILRYLKGSWRQRIMFERQK
ENAGVLGYVDADYAGDLDKRRSTSGYVFTCAGGPISWRALLQPITALSTTEAEYIALAEAGKEAIWLSGLVSQMGITQDC
VKLKCDSQSAIHLAKNQVFSGRSKHIEARYHRIRDWVESKEIWIEKVHTDDNAAXFLTKIVPAKKFKHCLNLINLVD
>Copia-81_VV#LTR/Copia 126-4192 via tfasty with Copia-106_Mad, 79.8% SW:3639, 1 frameshift and 4 stopcodons. [Vitis vinifera]
MATNNNSIHPQLPKFTGKNFDNWCIQMRVLFRSQDLWDLVNIGYNEVTDSKEFEALSKEQKDSLKDSxKKDQKALYAIFQ
AVDESIFEKILETETEKEAWVTLQKLYKGDEHVKRMKLQTLRGEFESLRMNDSESISDYFDRVQTIVNQMRVNGEKLDDQ
RIVEKIMCSLSARFDYVVATIEEGKDIFTLTVEGLMSSLCSHEQRMNQRINSTNLEQALQSRGIYRGRGGQQGGRGRGRG
RGRGGHNNFNNRDGDGDTNSSKGRGNTPKPKDKSHIQCFRCKKYGHYKSECRTKLQNEQDEQANTVEVExNLVLACNVAT
SNVDRQDVWYLDTRCNNHMCGKKELFSQLDESIxGEVNFGNKSKVSIMGKGNVKIRSKDGTDVTIADVFFVPDLFWNLLS
MGQLTEKWHIINISNGVCTLSDKNKKMIAKVQMTKNRMFPMFLQVETLFSLKATIEDSNWLWHLRFGHLNFRGLKLLVQK
NMVTGLPMIDIPDRACEGCLLGKQHRNSFPVGRSKRAKQPLELVHTDICDPGEVRSLGHNKYILTFIDDFTRKTWIYLLK
EKSEAFNKFKEFKVLVERQSGCNIKILRSDRGGEFTSNEFYNYCKSQGIRRQLTTSYTPQQNGIVERKNKTIVEMARSML
KAKSLPKTFWAEAVTCAVFLLNRCPTKAVFGRTPEEAWSGHKPEVSFLRIFGCIAYSHIPKEHRKKFDDKSEKCIFIGYS
DVTKGYKLYNPETGKLIVSRDVQFLENESWTWTQTQSEEKGVVIEEDFENQKDSTTDISTSYSSPIRSSPMQTKTRxESE
SQGRPKRSHIMPTHLKDYEVMKDTEITDEGLVNFCLFADCDPISYEEAASDEKWIQAMNEEIQSIEKNNTWELTTLPVGK
KPIGVKWVYKTKYKPDGKVDRFKARLVAKGYKQKPGIDYFEVFAPVARLDTVRMIIALAAQKMWKIHQMDVKSAFLNGVL
EEEVFVEQPPGYIKEGQEKQVYKLKKALYGLKQAPRAWYTWIDTYLLRHGFQKSPFEHTLYIKSNSNGDVIVVCLYVDDL
IFIGNCQQMFEDFREAMKQQFEMTDLGLMSYFLGIEVQQTDDGIFISQKKYAIDILKRFKMESSSTIRTPIVERLEMKKE
GIGELVNPTYFKGIVGSLRYLTSTRPDIVYGVGIISRFMEKPYQSHLQAAKRILRYVSGTRDHGIFYSYSSNFSLVGYTD
SDWGGDVETRKSTARYVFFYLGTGAFSWSSKKQQVVALSTIEAEYMAVTSATCQVVWLHRMLSELKYEQKGPTKILCDNK
SAIALTKNPMFHGRSKHISIKFHYIRELVKNQEIELEFCRSEDQVADIFTKPLKTDVFEKLKMMLGVIDFTIRIKG
>Copia-82_ST#LTR/Copia 102-4543 via tfasty with Copia-81_ST, 79.8% SW:4225, 1 frameshift and 2 stopcodons. [Solanum tuberosum]
METEKQLAHTHPLYVHPSDTPGSTLIPTQLTESDNFGLWRRSMCIALQAKRKLGFITGTCRKDQFSVDLHEDWETCNAIV
LSWIMNTVSKNLLSGIVYTSNAHLVWEDLKERFGKVNRVRIFQLHREIATISQGPDIVDAYFTKLKELWAEYDALVPSPG
CDCAKSKDYIEHLQRQRLLQFLSDLNESYEQARRQILMKTIEPTLNQAYAMISEDEGHMSSSFGITGGRGDLIAMQVGRG
QPYRGKKPFMQCTHCGLKGHLKEKCYQLIGYPADWKGKKVMANAVAMTNTVAMDTNVGRSFVAQERVTPGHYYKGEQLGY
YHNGQYYSFTEEQHKQVLGMLHAKRDTGEHQGNLAGIATSLMADLYSKEWIVDSGASHHITANYNMLKSRTEINSKQQVN
MPNGGQSNLTHIGIAEFLENMLVDNVLYVPDFKYNLLSVSKLTKSLSCSVTFFPDFCVFQDLYSGRVRGIGKEQCGLYVL
KQDNRKKDMTTLVNNAVVEGRCTDGNLWHKRLGHASTKTMKSLSFLQNKDLNVAANNDCPVCPLAKHSRLVFPISSTRSM
IPFELLHMDVLGPYKTPTHDNKHYFLTIVDDHTRFTWIYLLSLKSDVIVVLRTFLSQIKTQFASVVKIVRSDNGTKFFNK
NCTNLFTSYGIIHQSSCVHTPQQNGVVERKHRHILSVARALKFQANIPARYWGECIEGAVYLINRLPSDVLKGQSPFELL
YGKTPLFSHLKVFGCMCYATNPVKIDKFGERAKVAVFLGYSVTQKGYKLLNLATRMFFISRDVVFKEHLFPFGQTSSNEP
DQFLDMIHVKENNTDPTLPHHYDEIHSDPMVTNENIAIYETISMPTVDVIHDATTTGNCPDIDTTVTEVDDNDVVSSPSD
DYTADEVAQMIVPGSQENVAQIAPRRSARTVKAPLWHEDYISTGKGKANLATTYSLTDCVSYHKLSDNCRSFVAKISEVT
EPHHYKEASKDTRWVVAMKQEIKALEDNGTWEVVDLPKGKNAVGSKWVYKVKYKANGEIERFKARLVAKGYSQQEGLDYH
ETFSPVTKMVTVRTILALAASRGWNLSQMDVYNAFLQGDLLEEVYMELPQGFKGQGGAKVCKLLKSLYGLKQASRQWNIK
LSNALIDAGYCQSLYDYSMFTKRRGDDIVVILVYVDDLLITGSNDDLIHETKVVLHHKFKVKDLGELKYFLGIEILRSSK
GILLNQRKYALQIISDLGLGGAKPASTPMDPNQKFTSIEYDEHTxNSEDVPLTDITAYQRLIGRLLYLTITRPDISFAIQ
TLSQFMQTPKESHWNATIRLVKYIKQEPGMGILMSSNKADSLTCFCDADWAACPNTKRSVTGFLVKFGELLISWKxKKQQ
TVSRSSTEAEYRSLATTTSEITWLLGLFIELDVFIKQPVDVYSDSKAAIQIAANPIFHERTKHIEIDCHFIRDKIKAGIV
QTHHIGTKDQQADLLTKGLGRTQHEYLLSKLGVLNILHPPA
>Copia-84_BRa#LTR/Copia 145-4243 via tfasty with Copia-41_BRa, 78.1% SW:3834, 1 frameshift. [Brassica rapa]
MANDSSSAETTTVFNARDPSSTLLTVNMSNITKLTNANYLMWSKQICALLEGLELHGFLDETTMAAATILNAEGQNVVNP
DYPPWRRQDRLLYSALIGAITTPLQSVVSSATTTAQIWNLLAQTFGNPSRGHIRQLKNQVNKCTKGTKTISEYLRTIKTK
TDELAELGKPMDLEDITENVLAGLPDEYKPEIDAIHGRDSAISFAELHERLLNREAMLLCKEPAASLDVPATANATDTRS
RNSNMQNNWRGPNRNNNNRNYSNQGSHNSHQGSYNRGSRPYLGRCQACGIQGHSAKNCPEFQIIRGTNNSNQTWRPQFQQ
QAWYPRANVAMMNGDANTWLLDSGASHHMTSDIANLSLHTPYNGGDDVILGDGSGLNISHTGSLSLPSLKHPFFIDNVLF
VPALDKNLLSVFQLCKTNGVAVTFTPTYFQVRDLSTGALRLEGKPENGTYQWPKAPTSTPPSLSYASATSTTLSDWHSRL
GHPAASILQTMLSTFHLPLSSKALKNKPCNACSINKMHKLPFSVSTLISTSPLEVVFSDVWTSPLLSIDNFKYYVIFVDH
FTRYTWLYPLQRKSQVSEVFQRFKALVENRFQSKIKTLYTDNGGEYIALTAFLAANGISHYTSPPHTPEHNGISERKHRH
IVETGLALLSHASMPKNYWPYALATSVFLINRMPTPVLKMKSPFESLFGHIPNYSKLRIFGCLCFPWTKPYTSHKLDARS
SPCVFLGYSTTQSAYYCLDRKTSRIYTSRHVVFHEYVFPFELPNPLTSDSFDENVPAASSNADHVTTTVIPLKPQAPPST
APAPPSTAPVPVLQPPNSAPTTTTPTAAAAPPIPPPEQSTQPTIIPSTEAPPAAPNPVQHQPQRASTRKRKPVDKLNLSA
VVVPATERIPTSVAEALKDPRWRKAMCDEINAQLRNHTWDLHSPVHAANVVGCRWVFTIKRKADGSVDRFKARLVAKGFT
QQHGLDYQDTYSPVVKPATIRLVLSVAISNQWPIRQFDVNNAFLQGKLDETVYMMQPPGFINQDNPKAVCKLNKAIYGLK
QAPRAWYASVFYYIVLTGNNTQQMERFIKALSTRFSLKDLGSLSYFLGIEAHRTSHGLLLTQHRYIADLLQRIKMEDCNP
VSTPMCPYKPLTLDSGKPLSDPTQYRATVGSLQYLSLTRPDISFAVNKLSQFMHKPTDEHWHGVKRVLRYLSGSITTGIF
LSASNTPALHAFTDADWAGNRDDYTSTGAYIVYFGKHPIAWSSKKQATVARSSTEAEYRSIASTAAEVCWLLSLITELHI
KTTAPPTIYCDNIGATYLAANPVFHSRMKHLALDYHFVRSHVQAGHMRVTHVTSADQLADALTKPLSRAKHQQLCSKIGL
AQGGPS
>Copia-83_GM#LTR/Copia 52-3972  [Glycine max]
MALARMEIEKFVGGIDDFSLWRVKMNALLVHQGLDAALSEEAIAKIEERRHADVTKKAHSAILLSLGDEVLREVAEEKSA
KAVWDKLEDLYLKKSLANRLYLKKRLYALLMEDDKPLKKHLDDFNRIILDLKSIDVKIDDEDQAIILLSSLPKRFEHFVD
TMLYGKATLSMDEVKAALNSKENQRENDSKKEEIVEGLIASNKNQKKDFKNKKSKFKNKKKKCFLCDKEGHFKKDCPSKS
RFNEWNKHNADVVVAQEGYDNAEALVVSEEDSQKEWILDSGCSFHMCPNKGWFENYKQIDGGIVLLGNNKSCKVIGIGSL
RIRMHNGIERVLEDVRHVPELKRNLISLGTLDKEGCGYKCDRGSLEIYKGKNLIMRGVRKNGLYSLVGQTIVVDSANVVT
DDNTKLWHHRLAHISQKGLEELAKQGVFGQGRIEPLKFCEHCVLGKAKRQKFPTSTHSSNAALDYVHADLWGPSRTESHG
GARYFLSLVDDFSRKVWVYFLKHKNEVVKVFEEWKILVETQTGRKVKKLRTDNGLEFCDERFKTLCKQNGIARHLTVRGT
PQQNGLVERFNKTILERVRCMLNHVGLPKSFWAEAVSTVVYCINRSPSTAIGFKTPQEAWSGMKADYSELKTFGCIAYAH
LKQDKLEPRALKCIFIGYPQGVKGYKLWCLEPGHKKCIISRDVVFNELQMANLIMPFKSAGSQSSQVQVKSEESVTTQTH
EESVVARYKFVPASGQANEEATQDYCLARDRERRTIKPPERYGHADLISYALIVGKEIEDQEEPQSYDEAISSKDSSKWI
EAMEEEMASLEKNQTWTLVDCPKGQSIVGCRWLFKRKEGVEGVQSARFKARLVARGFTQKEGVDFVEIFSPVVKHSSIRV
LLAMVAHFDMELEQMDVKTTFLHGKLDETIYMKQPTGFVKKGDEQKVCLLNRSLYGLKQSPRMWYRRFDDYMIKIGFSRS
AYDCCVYWKCHKNEKPIYLLLYVDDMLLASQSMTEIARVKRLLNLEFEMKDLGHAKKILGIEITRNRKEKVLYLSQVDYL
KRVLERFNLKGAKSVTTPLAQHFKLSKEQEPKSDEDIAYMQKVPYASVVGSIMYSMVCCRPDLSYSMSVVSRFMANPGKR
HWEAAKWVLRYISGTIDVGLKYANRGEVPSIEGYVDSDFAGSIDTRKSTTGYAFKVFGNLVSWRANLQSVVALSTTEAEY
IAASEAVKEALWLRGLVSELLQVKELKTTVIHCDSQSAVSLSKNQVYHDRTKHVDVKYHFIRDMIKSEAVAIEKISTNEN
VADMLTKALPYEKFNYCLQLLNITGSN
>Copia-78_VV#LTR/Copia 111-4001 via tfasty with SHACOP18_MT, 89.2% SW:4860, 1 stopcodon. [Vitis vinifera]
MEGDSSFSAMAPPVFNGDNYTIWAVRMEAYLDAVDLWEAVEDDYDVPPLSDNPTMAQVKNHKERKTRKSKAKACLFAAVS
ATIFTRIMSLKSAKAIWSYLKFEYEGDDRIKGMKVLNLIRDFELQKMKESETIKEYSERLLSIANRVRLLGSEFKDSRIV
EKILVTIPERFEATITTLENTKDLSKITLAELLNSLQAQEQRMVMRQEATVEEALPAKHEDGWRNKKKKNRKHQQANGEA
AAHRSNKNKAGSSKGKYPPCKHCDRTGHSPFKCWKRPDAKCNKCNQLGHEAIICKNQNQQQDADAQIANEDENDHLFVAT
CFSGSISSDSWLIDNGCTNHMTHDKELFKELKPTRIARVRIGHGGHIPAKGIGTVAIATHLGTKVIDDVLYVPEIDQNLL
SVGQLLEKGFKVYFEDNYCLIKDASGQDLFKVKMRGKSFSLDPLEEEQIAFPAKENIVELWHKRLGHYHYQGLLKMQKSE
MVEGLPEFEVISTSCQTCQYGKQSRLPFPTATWRASNKLQLIHTDVGGPQRTPSLKGSRYYIIFIDDLTRMCWIYFLKFK
SEVGNTFWKFKAKVENESGCKIQILRSDNGKEYTSCQLNLFCEEAGIEHQLSAPYTPEQNGVSERRNRFIMEMARCMLHE
KNLPKKFWAEATNTAVFLHNRLSTKAVKNQTPFEAWYGYKPPMTFLKVFGCLCFTYVPQVKRDKLDKKAAAGIFIGYSTV
SKAYKVFQPHTDTIIISRDVHFMENEEWDWEDSKTELETSFLDEREDDPPVRGTRLLSEIYQRCNVAIYEPADHEEALKE
SKWKDAMKEELFMIEKNKTWELVDRPQERKVIGVKWVFRTKLNADGSVNKYKARLVVKGYAQIFGVDYSETFAPVARLDT
IRLLLAISAQLGWKVHQMDVKSAFLNGILQEEIYVEQPEGFVVEDKEDKVYRLHKALYGLKQAPRAWYSRIDDYLLGLDF
KKSLSESTLYVKENNNEILVVSLYVDDLLITGSSAKLIDEFKLDMMQVFEMTDLGLMTYFLGMEIKQGKDQVFICQRKYA
KEILKKFRMEDCKEMNTPMNQKEKLSKDDGAEKVEETYFRSLIGCLMYLTATRPDILYVVSVLSRFMHYASEVHLKAAKR
VVWYIKGTVDYGVKFQKIPNMKLFGYSDSDWGGSLDDMKSTSGYCFSLGSGSFSWCSKKxDIVAQSTAEAEFVAATATVN
QALWLRKILVDLHMKQTQGTEVFVDNQATIAISHNPVFHGKTKHFNIKLFFLRGVQKDGDINLRYCKTEEQLADIFTKPL
LVTKFEFLRQKLGVCSS
>Copia-72_ST#LTR/Copia 52-4528 via tfasty with Copia-74_ST, 66.1% SW:2961, 2 frameshifts and 6 stopcodons. [Solanum tuberosum]
MGDSSSPSNNSGTIVAPATSAMDSSHPYYLHPSDSPGMNLISIVFDGRGFPGxRRSIWIALSAKRKLGFINGPCQAPTSD
ASDSSQWNCCNDMVTSWLLNSLSKEIGDSVIYSNTAKELxDSLExRFGKSNGTKLFHLQKELNGLVQGNSDISGYFTKLK
RLWDELDSLNADITCFCVCVCNGKSKISKSLQDQRLIQFLMGLNNTYGQARGTILMMNPLLGMDLAYSLLLQDENQREVY
QHTQTSPDSSSFMAVNLGNHNHSSGSPNLRNGNGNQNFRNGYGGQKSDVYPQKPSFPSQRYGINTQRTKGKKSKYNPNVT
CTYCFRAGHVMDDCYRLHGYPEDFEFTKGKNSIIKGTAAFAGEDNSYQSSKExGTTNFQHFTKEQMAEITQMVKEMQMSQ
SMPSTEINANGVAGTILKYSGTCFSIFNSVNWIIDSGASEHMCFEASSFSFMKPLHVPMNISLPNSFKVTVTHIGSVPIL
PNLTLTNVLHVPVFKYNILSIHMLCDQINWNVLFTSSACLLQDLLLKKVVAFGELREGLYLLQPTTFRPSLNSVKQSVSF
SKGSNSSFIHVSCPVLCDALSNVSLWHMRLGHLPLSTMKLFNFIKHSSDSTLICHVCSQAKQTRPSFPTSSIKTKGTFDL
IHIDTWGPYKHATHNGYKYFLTIVDDYSRGIWTFLLSTKSNAFPILKTFLSMVERQFNKKVKCIRSDNDLELGKGTLAAA
YLQEHGILHQQSCVATPQQNGVVERKHRYLLEVARGLFFQSHVPISYWGECVLTTTHLINIFPSKVLHGKTPYEILFHQP
HSYSSLRTFGCLCYCSTLSQGRSKFDPRATQCVFLGYPHSQKGYTVMDLTSKRQFPFATSSTSSSQLFTPSPSCFDVPDQ
PFSPITFNNHIFSSVPPPPSSPNIVHPPSPNYVIPPIPYPRRSDRLSHKPGYLKDFVCSSVYLTNLIDSCFAFPPPTQLF
YFNTLSVPNQQIFRSLTNFTEPTSYSQAVAHPDWVSAMAAEIAALELNDTWEVVSLPLGKKVLPCKWVYKIKLLSDGSIE
RFKARLVVKGDIQREGIYYNETFSHVVKMTTIRCLLAVAVKKDxKVSQLDVSNAFLHGSLDEEVFMKFPPGLIPPSPTHV
CLLKKSLYGLKQASRQWYSxLAGALSYKGYTSSLNDYSLFFKRSAGLISIVTIYVDDILLTGDDLHEIAEIKSFLNAEFR
VKDLGDINYFLGLKIIRENQGFIITQRKFALDLLKEFDTSNVSSVTSHLDPSIKLHADADILLSDPTTYRHLVGKLNYLT
HTRPDLAFPVLKLSQFMQWPCHSHYSAALRVLKYLALDPGQGILLSSAPSLSLNVFCDADWASCKVSRRSISGFFITLGG
SPISWKSKKQAFISLSSAEAEYKSMRKVTAEITWLIRLLEDLLVPPSLPIPINSDSQVVIHIAHNPVFHERTKHVELDCH
FVRQQYASGLISLQFVPSNSQLADIFTKPLSGASHHGILSKLGVSSLPSNLRG
>Copia-71_Mad#LTR/Copia 120-4520 via tfasty with Copia-87_Mad, 1 stopcodon. [Malus x domestica]
MAANSSNSSSPVAAHPSSPAIADPSSSLPPHLNPSPMNPNSSFQASINSITIQNIGSMIQTKLKRHNYLVWRSLFEPIFR
RYKLTGMVDGSEPPPPQFLADLSGNLSSIPNPAFEIWYEKDQNILIWINSTLSEDLIPFTVGVQSSRELWQNLEKRFGGV
SRSHIHQLRSNLQLMSKGTSTISEYLQRIKEVSDALAAAGAPVEESDLLHLILNGLPDDYDSFVDSIQFRLADTTVDDLH
GFLLSKEMALARRKQSQGSSEPYQAFTSIPAASNAPPLLPTPPPHQAYNAQSNGSQNSYPGNNRGNFQRNTSQRPYNNRN
RSNRFNNSSTNRGGNRGGNRGFRSFTSAVIPCQICEDTGHLAIDCSHRMNPNFQGRVPPAKLAMYASSSTSSPPPWLLDS
GASSHMTNNIHHLQNPQPYTGPDKVYIGDGQGLPILHTGSTLLKTPSADFQLKNVLHVPHLKHDLLSANMFLRDNWCSLT
LNPFDFHVKDLTTGRMLFRAPVSNGLYPFYASSSPAPKVHAHSAIRTSSHVWHQRLGHPTFKTFRSLLSKSILPVSNNVQ
QFFCSNCVLGKCAKLPFQESLCTTSRSLELVHADVWGPAPVCSVSGYRFYVIFVDDFTKYTWLYPLKHKSEVFHIFVQFQ
ALVENLSGYKIGTLRSDSGGEFTSSNFKHHLSLHGIQQQFSCPYTPQQNGCAERKHRHIVETARTLLIASQVPHKFWVEG
FLTAVYLINRLPPVNKSSPWEQFFKKVPDYKSLRVFGCQCFPWLKPYTNSKLDPKSKMCVFIGYSLAHKGYRCLDPFTNR
VYLSRHVHFDEHTFPFHDPHLLKSSTPHTPELTHLFPLPFPIFILLILSLPVFHHPYLPHLLNLRQLLNxASSQPEQVHS
PAPCPAPLQPPSPPSSPLPASHSLHPAPHPVPPISSVHPMQTRSKSGIYKPKALTATTHPLPSHFDSEFIPTTYLQASKH
SQWRAAMQDEFNALQSTGTWQLVPSTSTHNLVGCKWVFRIKRKPDGSVDRYKARLVAKGYNQQEGIDYGDTFSPVAKPVT
IRIILTLAVQSNWFLHQLDVSNAFLHGSLKENVYMAQPPGFIDQDHPTHICHLKKSLYGLKQAPRAWYEKLQSALFSMGF
QASHSDHSLFVLHKPTLVLVLVYVDDIIVTGPSSSVCNTIISQLSSKFPIKDLGDLHYFLGLEVQKSTSGAFIHQSKYIL
DLLKRTKMDGAKPCATPLSSVKLDHTGSLLSNPEDYRSIVGALQYLTWTRPDLSFAVNLVCQFMHSPREPHFQAVKRILR
YLKGTLGFGLWFPKTTSPLLLNAYSDADWAGCSWDRRSTGGFCIFLGPCLVSWSAKKQHTVARSSTEAEYRSLAHTAAEI
TWICQLFSDIGFKLSSLPQIWCDNVSAIALASNPVFHARTKHVEIDYHYIRELVLAKLLTVKFVCSADQLADIHTKSLPR
PRFLHLRSKLSLQPSPFSLRGCEEQVT
>Copia-73_SB#LTR/Copia 552-4697  [Sorghum bicolor]
MDTGKEAQRKAAACEHESGGNCGDDSLMTKAELRNEMKSMIQGLLEMNLIGPREMFAVEVASGVAGAVDANVIEHLVEMY
KEAIRTVSNGKAELEKSLQKFRMAAEVYRLEMEARVRAKMEELWALNAKKADLELKVRFLEAELIAALPKMGELEDLKRE
KAPFFTSIGEQAKQWEQWQKMEGLENFKTTSNGPVIATTSHFGNFANYAHLGKGTQAQALASTCRHNIEWVIDSGASKHV
TGISNPFKTYTPHSYSETIQTADGTSQPIHGVGSIECTPSLCLSSVLHVPSFPVNLLSVSSLIDQFKCTVTFDENSCIFQ
EKRTGRVIGTGVRRDGLWFINHVESALAAAAGAKEREIFLLHCRLGHFSFESLSKLYPEVFKDVDRSKLVCDACELGKHT
RSTYPSMGLRSCEPFMLIHSDVWGPCSVTSVSGFKWFVTFIDCYTRMTWIYMLRGKHEVLRCFQDFHKLVTNQFNAKIRI
LRTDNGKEYVNNDFGAYLSDHGIIHQTTCPNTPPQNGVAERKNRHLLEVARSLMFQMNVPKYLWSEAVMTAAYLINRMPS
RILGMKSPTELLLGQQEFKVPPRVFGCVCFVRDHRPSVGKLDPQAVKCVFVGYSSTQKGYKCWDPVGKKLFVSMDVTFRE
FEPYYTKPWDLDPLLEEFSSVTESDSREGEHEGVDAQNEVIVGTIPCLMDRSGIQETIHQDNGECEGEEIVGDEVVGDGI
EESIDEGSEENREIVAKEPIVYQRRRFRSQGEQTAEKEPIVYQRRRFRSQVEQVGTPQPQQPVLPVPNLSSDLSPLSSST
QSELTGNVSPTPEHVELSLAQRRDIRSNFGKPPVRYGFEHPSTDHDIANFLSYSHLSPAYRAFVASLQTAPVPRDWKCAK
QDPKWKAAMEEEMHALQKNKTWELVPLPKGKRVVGCKWVFTVKQNPKGEVDRYKARLVAKGYSQTYGIDYDETFAPVAKM
GTVRTLISCAVNFGWPLHQMDVKNAFLYGDLQEEVYMEIPPGFANSQTVGKVCRLKKSLYGLKQSPRAWFDRFRRTVCGM
GYTQCNGDHTVFYKHRGTFITIMAVYVDDIVITGDDVEEIKCLKKNLGKAFEVKDLGPLRYFLGIEIARSPKGIVLSQRK
YVLDLLTETGMLGCRPCSTPIDKNHQISAESGVSVNKETYQRLVGRLIYLCHTRPDISYAVSVVSRYMHDPRTGHMELVY
RILRYLKGTPGRGLWFKKNMHLDLEGYCDADWASSRDDRRSTSGYCVFVGGNLVSWHSKKQAVVARSTAEAEYRAMALSL
CEMLWLKGLLKELRVLRNETMMLHCDNVAAINIANNPVQFDRTKHVEIDRFFIKEKLDSGVLRLEYVKSRSQLAYCFTKG
LGPSENELSCNKMGMLDIFSPS
>Copia-77_MLP#LTR/Copia 5-4223 via tfasty with Copia-65_MLP, 78.8% SW:3243, 2 frameshifts. [Melampsora larici-populina]
MSFTIPDDSDISFESANSHNTVLDNQTSSSDNQLIVSNPYATTIEPLDPESMNPEMETQVAGTNQSQTXPGVNNSQXLQQ
ILNQQSITNAPQTVHQTITNVFTITGSENTDSWIVRTKNCQVKLASLVSLTADGSNFDVWDADIQEYLETMTGCIDYLHP
AAIPSVSGWREDIARGINGLFHWTVDKHISMRLKEHSSVPSARYAWLKSQFSGQTFAGRMSLLDQFISIKYDPSSTTVDA
HVHSASTLRRKLERSGMFIPDDVFAGVLLNSVPQDFPDVTNTFEAMIINDPCSIVNSSSMVRAIGAADVAHRRGNISVAD
GLSTSVIKSSKPKVLRCYYCKKAGHLKPDCRILKAKDKKRSSPVASTSDARTVEPQFADIDFSGCVESRHIIVSQLDTDI
PPSTIIFDTGATHHVFNDRSFFTSIKNITPLPVRMANNNSSSFITGVGSVKICNATNSLEILEVNNVYFCENLRHSLLSG
IQLEEEGITFRNSSKGIELWKNESRVLTAIKSGRKWILKAISNSVETSAVLGDFTLWHRRLGHVNDKTLLKLVREKSCVG
LPEKLTKTVACEDCAVSKSTKTSTIGPSLISYDSPLQLVVADLCGPFPVKTVSGSEYSLEIRDVYSTFMRTYLLKSKSDA
TNQIKIFIAEAERRTGKKVINWRTDGGGEFINNSLKAYFADKGIKIQTSLPYFHEQNGSIERANRTIQGGMCVLLRDSGL
PKKFWGFAIITATDLHNRTPNSNTGSKTPIELMFGFSPQVDHLRIFGSWAFVHIPVEKRKKLDDRAVKCRFVGYLEGSKG
WRFWNPAKDEFIDSAHARWLDEKATSKILPVDAPLPLDKSSLNHILTSDDAIIDHDELRHLFESLSITYSLEDRQFTETV
RQQDHNIDLLHAKAAGFAARLPRSYQEAMNGEYSSEWKAACAKELEMLIKLGVWEEVELPAGQKTVSSKWVFAEKTDSLG
NVIKRKSRFVVRGFTQREGLDFSETFAPTAKFTSLMIIFTITVYHGWHIRGFDVVAAYPHSPIDETIYVKPAEGIPMSSA
KFVLLLRRALYGTKQAARCWWKHFSSILSGMGCKYCINDQSLYVLHYKNDIAILWIHVDDGVICGSSIDIINFIHESLLK
TFDITWSDRLEQIVGIKIDYKPDGIFLSQPVLTASILESTGFTTSKTSTPMIANLQLDTSGADAVGINSSSYLSILGSLS
YLAIGTRPDISFSVNYLARFSSKPGDKHWLALKHLLRYISGTKGDGIYFRKKEQDVDLITYCDANWGGEFSRSTHGFAVF
LFGNLISWASRRQSCVATSTCHAEYMALGVASRESIWIQSLLEDIFKKSFITTLKCDNTAAIKVAQDLHLTKRSHHVARE
FHYVNEQIFDGNLKITWIDGPNQKADILTKSLGNVTFQIHKHNICMS
>Copia-75_ST#LTR/Copia 571-4989 via tfasty with Copia-3_ST, 79.4% SW:4102, 2 frameshifts and 4 stopcodons. [Solanum tuberosum]
MGTSGAAAEHQLGTTMAVATIDHLHPLYMYHFDAPGSLSVGIMLNGSDNYTLWSKAMQLALLGKNKVGFVDGTVKRSQFT
GDLTRLWDRCNAIVVSWILCNVSKDLHSGVLFCSDAHLIWEDLKERFNKVNSSQIFQLHKELFTLVQGVASVSIYYSRLK
DLWDEYDSIMPPPSCNCPKSRDFYDHLQHQRMLQFLMGLNDNYSQARSQILLMPHLPSINHAYAMINQDESQQLVAGSSR
LIPENLTPTAMFTAKPASSPQRPKKPYNPNVVCDFCHMKGHLRIDCLKLLNCDFCHKTGHLKLNCYKLNSYPPHYKGKRE
VVVAGNSMYDVGSVHRQDSITMTPYQQCPPLSPCYIPPPQPPGSMLPMFTPAQHQQLLHMLNQSSINDTQGTANMAGNPS
LSQPVLIDWIVDTGASHHMIGNPHLLHHKGLLDNTSHVQLSTGTSAKVSHIGDCHIGGGDILKNVLCIPAFKFNLMSVSQ
VTKDLNCCVTFYPKCCVFQDLSFGKVRMIGKERNGLYTLCFQMEVKDKVPRGCLAVTQEADGSVWHKRFCHVPMNVLRKI
PTFHSLGDKFALHNCEVCPLARQTRLPFTHSTSKSSCIFQLLHMDVWGPYKVETFDGMRYFLTIVDDYSRWTWIFLMRLK
SDVVGLLKQFFVDTETQFAIxVKRVRSDNGFEFFNTNCNALFKLYGVVHESSCPYTPQQNGVVERKHRHILEIARAIKFQ
ASFPDKFWGFCIHAAVYVLNRIPSTVLADLSPFEKLFEKPPSFEHMRTIGCLCFATNLPKHDKFGPKAVRAVFMGYGTTQ
KGYRLYDLENKSFFISRDVVFMEDVFPFKDTVTDQQHSLPTHKxFAFDDLVTASIVPVPPSQSTRIVPEEIVQLQVDEVA
TSVAPVDVIPATPVRKSTRGVRPPIWHKDYVTKASTRGCIYPIASVVNYTNLSPHYQSFVSKFSTDTEPTSYTEASKDTK
WIKAMKCEIKALEENKTWAVVELPKGKKAIGCKWVYKIKYNADGTIERFKARLVAKGYNxKEGFDYQETFSPVVKMATVW
SVISLAAANHWPIHQMDVYNAFLQGDLYEEVYMDLTDGFNNRLGNNQACRLLKSLYGLKQASRQWNIKLTTTLVASGFHQ
STRDYSLFTKKSDGKLVIVLIYVDDLLLTGNDSIMMHETKEALQAAFKIKDLGELRYFLGLEFARSKEGILIHQRKYALE
LIADLGLAGAKSVSTPMELNQKLTTTQFDTNIPSGKQDPSLADPTNYQRLIGRLLYLTTTRPDISFTVQCLSQFMHSPKK
SHMDAAVRLVRYLKSAPGMGILMSSHGGNKLKVFCDADWGACINSRRSITGYLVQxGGSPISWKSKKQLTISRSSAEAEY
RAMASTVAEIVWVVGLFQELGVSISQPVSLYSDSTSALQIAANPVFHERTKHIDIDCHFIREKIQDGLLVTTYIPSADQP
ADILTKSLGVHSHSHLMSKLGMKNIFIAPSLKE
>Copia-84_VV#LTR/Copia 895-4995  [Vitis vinifera]
MSSLSLRSILETSKLVGANYDDWYRNLRIVLMHEKLINIIDKPAITAPADTNDAEATKTYQKYLEECLSAKCIMLASMSP
ELQRQHEDMEPPAIIEHLKKMYGGQSRTARYQLSKALFRSSLAVNAQVGPHVLKMIDLIEQLEKLGCTLGKELSQDLILQ
SLPDSFSQFIVNFNMNKMSCDLHEMLNLLIDYENQVSSEKNKGIVMVVGKTSKKKGKGKYIPKRKPLGTKGGVTKPKYKK
VKTDHSDAECFFCKEKGHWKRNCKKYLDSLKNKKQGKTLMKNVFMISLTVTDSSTWVLDTGSSFNICNTLQGLKITRWLK
KGEINLQVGNGANVAALALGSISLNMPTGKVLVLNDCYYVPNFVSNIISISMLDKRGFRIIFNNNICSIYHDDDLYVNGY
LQHGIYVLPDVNYNSVMHVSSSFKRKRDSQLNKTYLWHCRLGHVGEKRINKLYKEGYLDNYDYESYKTCESCLKGKMTKS
PFIGTGERASELLGLVHTDVCGPMKIQAKXGYSYFITFTDDMSRYGFLYLMKHKSESFEMFKRFRSEVEKQTGNSIKVLR
SDRGGEYLSENFIDYLRENGILSQWTPPGTPQHNGVSERRNRTLLDMVRSMMGFTDLPVNLWGYALEAAAYLLNKIPTKT
VSTTPYEIWKGRKPNLKHIKVWGCPAYVKKLQTDKLEARSDKCRFIGYPKETMGYYFYHPLDHKVFVARGGTFLEREFLA
EGSHGKEIELDETQEETNETTAAQEHEMEFEQPFFDVLKSTQRLQSPTIVAPEPAIVQEQVNEPEPAVVQEQVNEPILEQ
IQQPLNPIHEPLRRSSRAHRAPDRLNLMVQDDLSNEVHHNDDDPKNYEEAMQSLDRNKWQEAMESEMESMKINKVWTLVE
ASKDIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAF
LNGELKEDVYMTQPEGYTSMSDHNKVCKLRRSIYGLKQASRSWNIHFNKTIEKFDFVKCEEEPCVYKRFSGSTIIFLVLY
VDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTG
VTLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKDQFLIY
GESELKLKGYTDASFASDKDDSKSISGYVFTLNGGAVSWKSSKQATVADSTTEAEYIAASEAAKEAVWMKKFISELGVVP
SIEEPIPLLCDNNGAIAQAKEPRSHQKSKHVLRRYHLIREIIERGDVKIEKIDGKENAADPFTKALGITQFDKHKWEVGM
KYMTDWL
>Copia-92_BRa#LTR/Copia 84-4378 via tfasty with Copia-45_BRa, 88.5% SW:5435, 2 frameshifts. [Brassica rapa]
MASPASNSETINISETQSILNLNMTNVTKLTASNFLMWSRQVLALLDGYDLSSYIDGSGIIPSPTNTVDGVTTPNPAYAI
WKRQDRLIYSSLLGAITVTIQPILSTTTTSYQIWETLSTTYAKPSRAHVKQIRQQLKTWTKGTMTIDVTYVQGFVTRFDQ
LALLGKPIEIEDQLEYVLDGLPDEYKQIVDQIEGRDTAPSIAEVHEKLLNFEVKLQSKTTTPATTPITANVANYRGSNHS
NTTRNSSYQGQNRSNNNRPQQQTWQQQQFSAPGGQAPRGYQCRCQFCNVQGHSVKRCPQLQNVPAVSQSSRPFTPNVSSW
NPRANVAIAQSYNPNNWILDSGATHHLTTDLSNLSLHQPYTGGEEVTIADGSNLPISHTGSTSLNSSTHSFRLNDVLYVP
NLHKNLIYVYRLCNTNNVSFEFFPAHFQVKDLSTGVRLLQGKTNDELYEWPLTSQNTISLFAASTSKTNQSTWHSRLGHP
SFSVFQTVASKFSLPVFSLSSKEPPCSHCLINKSHKLPFHTNTITTTKPLQYIYTDVWTSPIHSLDNYKYYLIFVDHFTR
YTWFYPLTKKSQVRDVFIQFKAVVETHFGSRIENLYSDNGGEFIALRSFLASHGISHLTSPPHTPEHNGVAERKHRHIVE
MGLTLLHESSMPTTYWTYAFATAVYLINRLPTPVLQQLSPYAKLFQKEPNYLKLRVFGCACYPWLRPYAKHKLDLRSLQC
IFLGYSLTQSAYLCLHQPTGRIYTSRHVKFDETQFLYKPPSSSAPPDFDHSSPAYAPPTIIPLPSAPLVHTPSSASPGQD
PHLPQSPAPSTAPLPQGNFEMSSGNNSTGSTSNSSTPTNTESNPTQPDPQPSQTIPSSLPNPTSPQSSSSPEPPPEPELE
PQPQPVPQNAHPMRTRSKNQITKPVKKLTLTAVTSAPNHTIPKTVAQAMRDEKWRASMSSEYNAQLDNHTFELVPPPANH
RIIDTRWIHTIKYWPNGDIRRYKSRWVARGFNQEYGIDYGETFSPVVKSLTIRLVLHLAVTNSWEIKQLDVNNAFLQGTL
TDEVYVTQPPGFEDHDRPHHVCRLRKALYGLKQAPRAWYQELKTFLCQMGCHNSAADTSVLIYTDNTNLLYILVYVDGII
ITGSSSTLVSACINVLASRFSLKDPTDLDYFLGIEVTRTSRGLHLMQRKYIVDLLTKMNILDANPVSTPLPTTPKLTLNF
GYALDNPHEYRQVIGSLQYLAFTRPDIAYSVNKLSQFMHKPTDEHWKAAKRILRYLAGTLSHGIYISKSSPLTLHAYSDA
DWAGDTDDYVSTNVYIVYMGSTPIAWSSRKQTGVARSSTEAEYRSVANTAAELSWVCSLLTELGVTLSTTPVVYCDNVGA
TYLSANPVFHSKMKHLALDFHFVRNNVQSGALRVTHVSTKDQLADALTKPLSRSRLIELVNKIGVTKLPPS
>Copia-91_SB#LTR/Copia 37-4483 via tfasty with Copia-26_SB, 1 frameshift and 2 stopcodons. [Sorghum bicolor]
MAFAASSSALSAALSLTTFLPPVSEKLNRTNHQSWKAQVLAALRGAQLADWLETNTEPPARYLPKKKPGDEDEVPVANPE
FGAWVAKEQIVLSYLLTNLSKEILGHVNTETTAKGAWAAIEALFASQSRAKIISTRMALTSATKGTSNISEYFTKIKSLA
DEMAAASRKLQDEEFVSYVLTGLDQDFDSIVSAVAARVEPITVNELHTQLIAHEQRLEMRNGGNQSSANLATKGKSGGGN
SYRGGRGGSGRNGGRGNRGGFTRGGGNNGANRGSFxPGIFCQICGKEGHPAHRCFKRFDSNYNGPPQKSASAATTSSYGV
DTNWYMDTGATDHITGDLERLSFRDKYHGGEQVHAANGSGMEITHIGHNTLCTPVTHLRLNNILHVPKSRKNLLSVHRFT
NDNNVFVEFHPRYFAVKEEETRKMLLRGRCEGGLYPLRSSSNKSPPNKQVLGAVRPTTSLWHNRLGHASSQVVDSVLSRH
KLSFVKDMNKSHVCNACQQGKAHQLPYPRSTSISARPFDLIFSDVWGPAPTSVGRQNYYVSFIDDHSKFVWLYLLRNKSE
VFQVFHDFQSMVERQHNRKILSVQTDWGGEYQSLNSFFQRVGITHRVSCPHAHQQNGAAERKHRHIVEVGLMLLSQASMP
LKFWGEAFIHVVYLINRLPSRIINNQTPFFRLLGKDPEYTDLRVFGCACWPNLRPFNTRKLEFRSKQCVFLGFSHMHKGF
KCLDPKEGRVYISRDVVFDESVFPFSSLHPNAGAQLRAELLLLPMHLHDHRGANDCGHNMCPPEPTDLSTSCAGHEGVPE
KNSLQNDIAFRSTSGFGAHTHECRTSGNSGRSEVDSPGVGAAPGPRSSSGSVPVGASGGRSDSECRGEERIRSSGSSVAA
PTLPPSSEQRVLTASDPGEDTAAATEADPQGSTAAAPRSGTTSSSAASPEFSTEPENPRPARPATRLQSGIIKPKIYTDG
TVRxGMLANTTDTEPTTVENTNDPKWFEAMNVEHDALLRNQTWKLVPRPRGKNIIGCKWVYKVKRRADGSVDRYKARLVA
KGFKQRYGIDYEDTFSPVVKAATIRLILSIAVSNGWLLRQLDVQNAFLHGVLDEEVYMDQPPGYVSKSHPGYVCKLEKAL
YGLKQAPRAWYARLCSKLISLGFKSSKADTSLFYYNKGGHTIFVLVYVDDIIVASSSLEATKVLLSDLQKDFALKDLGDL
HYFLGIEVKRDSNGLVLSQGKYANDILVRSGMSKSKPVHTPLPSTQKISITDSDKLGEEDCTRYRSLVGALQYLTLTRPD
ISFAVYKVCQFLHAPTTTHLSAVKHILRYIQGTSKFGLRIRKSKCRIVSAFSDADWAGDVDDRRSTGDFAVFLGENLISW
TARKQATVSRSSTEAEYKALANATAEVMWVQKLLAELCVPHARVARLWYDNLGAKYLSANPVFHSRTKHIEIDFHFVRER
VAQKLLDIRFISSEDQLADGFTKSLPVTKFRKFRCNLNLISG
>Copia-98_SB#LTR/Copia 36-4518 via tfasty with Copia-26_SB, 3 frameshifts and 1 stopcodon. [Sorghum bicolor]
MATPSSALAATYYPITFLPTNEKLTKANFASWRAQVVSALNGYQLGKYILPGAEPPSKFLETKPGTQIDSKEPPAINPEY
EIWIAKDQQVLNYLLSNMSKEILGQVNHEVTASGCWATTEGLFSSHSRARVIATRMALATASKGTSSISDYFGKMKHLAD
EMTSAGKKLEDEELVSFILIGLDRDYDLVVTAVTARVEPITMTQLYTQLVSHEQRIEIRDGGSNQSSANIAAKWSRDSGS
NTGSHQNRNGGKQCGGRGGGGRGGFGRGPRGGRGGPNNQRRQPFQPGVYCQLCKKEGHTVVACFKRFDATFLPPQKSASS
ATASYGVDSNWYMDTGATDHITSELDKLNVRDRYHGGNQIHTAGGSGMEIKHIGHGVLHAPSTKLSLHNILHVPCANKNL
VSVNRIARDNNVFLEFHPDHFLVKEQSTKKTLLKGACENGLYPVKPLNKEVLGVTKPTTSLWHHRLGHASTAIVQQVLHR
HKLPFIKESNKTSVCDACQRGKSHQLPYPRSTSTSSSPLDLVFSDVWGPAPTSVDxNNYYVSFIDDYSKFVWIYLLRQKS
EVFQCLKNFQCLVERQFDRKIRTMQTDWGGEYQALSSFFTRMGISHDVFCPHAHQQNGSAERKHRHIVEMGLTLLAHASM
PLKFWDEAFSTAVFIINRLPSRIIDNDTPYSRLFGQQLDYSSLRTFGCACWPHLRPYNTRKLDFRSKQCVFLGYSNQHKG
FKCLDPKEGRVYISRDVVFDEHVFPLSSLHPNAGAQLRAELSLLPDVLLNPGGMHASDHSLFAPLPTNASHCSPGDTSGA
GEKTGENSETNGGVQSSHAPYFMCPPEGSSGRSQVDAPEHSGVPAGESTPSVEPSASSSSADGSSAPLHAEHESGARRET
PQAPSPSGDSAASAPHADLVGGSDVGALGSSVPVPDGVIPGLPAAHRPVTRGQHGISKPKQYTDGTVRWCQLASTSAEEP
TTIRDALQDPQWKMAMDAEHDALLRNKTWHLVPLPKGKNVTDCKWVYKIKRRADGSLDRYKARLVAKGYKQRYGLDYEDT
FSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGVLNEEVYMYQPPGYVDPRRPDFVCKLDKALYGLKQAPRAWYARL
CSKLEHLGFVPSKTDTSLFYYSRGGHTLFVLVYVDDIIVVSSSTSATQALLSDLQKDFALKDLGDLHYFLGIEVKRGNNS
LTLTQERYANDILKRSGMEKCKPIETPLSYSEKLSLETGDKLGPDDCTKYRSMVGALQYLTLTRPDIAFAVNKVCQFLQA
PTTVHWSAVKRIMRYVRGTTNMGLCIRKSLSMVVSALILRYVRGTTNMGLCIRKSLSMVVSAFSDADWAGCVDDRRSTGG
FAVFLGDNLISWRAKKQPTVSRSSTEAEYKSLANATAEVLWVQKLLSELRIPHPPKARLWCDNLGATYLSANPIFHARTK
HIEIDFHFVHERMAQKLLEIRFVHTDDQLADGFTKALPIVKFRIFRNNLNLKCG
>Copia-102_Mad#LTR/Copia 106-4368 via tfasty with Copia-69_Mad, 85.5% SW:4843, 1 stopcodon. [Malus x domestica]
MAEDQALSREAASSSNTSSPSVIHGEINPNLRLCSVLLNEFNYLPWSRAISLALGGRSKLGYANGSIKAPEPSSTSYGAW
HANDQLVMSWILNSMEPKLSELFSYSESSRVLWESIKEMYGSQNNAARIFQLKKDLAGLRQGDQSFVQHLGSMKSMWNEL
DMYRPHTTDSAALLKRADEDKVFQLLASLGAEYEDLRSHLLMTPDLPSFNSVCQAVQREETRRKVMHIEPKSNSEARVFT
SNHKHTGEKNFTGKKADWKCTYCNMKGHIREKCWILHPELKPRFDKEGRMIKEGKGIFPKALHSTSSLTGGLPNFTANPI
DLINEFASFLQRRxGTTEEEEVISKNPTAMLGKFAGFLNETTTQDNVSGIISALSTALNEITHDCWIIDSGATDHITNKS
SCLDKFQNMPESSLVSVANGKGEPIMGKGKLKLLSDEIESTALYVPSFPFQLLSIGKLTNTLNCLAIFSPHNVVFQDRVT
QKKIGEGFLLNGLYYLSKKLKPVKHPFASLSLPQEYQLWHLRLAHPSEPVMNKLFPNFCKATHECEVCQMSKATRLPFVS
SKSRTSKLFEVVHSDIWGPSRVESFDGYKYYATFIDDYSRCTWIYLLKFKSEFFDAFKDFHQLILNQFSSKLNILQSDNG
TEYTSNNMSNYLSNHGILHQTSCVGTPQQNGVAERKNRDLLEKSRSLMLQMHVPRRFWSQALLTAAYIINRLPTRVLNSK
SPVEVMKGRTIDISHLRTFGCTCYVHIQAAHRDKLDPRAVKSAFMGYSSTKKGYKYYNPLNGKIGVSRDVRFDENAPFFH
KNSSEEPQGENLLDIFPLPTPANLHEFNVYLDHHSEQHDDEETSPDQGSSGTTPQPVLAPRRNPTRDRHPPLRLQEYVTY
TARHPISKALTYQKLSPSHAAFLHQLSTNDEPRNFNEAAHIPVWQKAMKEELQALNDNQTWSVVDLPKGKRAVGSRWIYK
TKFHSNGNIERHKARLVARGFTQTYGIDYKETFAPVAKMSTVRVLLSVAVNLDWSLFQMDVKNAFLHGDLEEEVYMKLPP
GHPQEHETNKVCKLHKAIYGLKQSPRAWYSKLSSVLEAAGFTRSHADSSLFVRTGISGKLVVLIYVDDLIITGDNIEEID
ALKSSLHQQFAIKDLGILKYFLGIEMATSSKGLFLNQRRYVLDLLDEAGMLNCKPASTPLVSRLQVDAPSEPLPNPRVYQ
RVVGKLIYLTITRPDIAYSVSFVSQFMHSPSMIHWESVKRILRYLKGSIGRGLLMQKHGSNHIMAYTDADWAGNALDRKS
TTGFCTFVGGNLVTWKSKKQTVVARSSAEAEYRAMAATACELIWLKSLLTDLGCVNKEPMSLFCDNQAAMHIASNPVFHE
RTKHIEVDCHYIRAQVQSKVINTVYTRSYDQLADLFTKALDSTHFQRLLSKLGSINPLDPA
>Copia-101_BRa#LTR/Copia 6-4251 via tfasty with ATCopia48, 82.2% SW:4683, 1 frameshift. [Brassica rapa]
MAMEPYTPPTLDIVNSVTVKLTDKNYILWKRQFEAFLNGQGLLGFVNGSMPQPVATITVPNINGTSTPVPNPDSALWFQT
DQVIQSWLLGSFSEDIQSVVLHCTTSQEIWLTLASHFNRATSSRLFELQRKLQTTSKQNKTMADYLRDIKAICDQLTSIG
SPVPERMKIFAALLGLGKDYEPIKTSIEGAMDTAQAPTFEDIVHRLTAFDDRLQSYSSSDTAVTPHLAFHTTRGRPFFNR
NRGRGRNGRDFFSTRGRGFPQHISSASSSRSSVSSDGDSRPVCQICGKPGHVAMKCWHRFDNSYQLDEMHNALAALRISE
ISDGAGHEWFPDTGASAHVTNSPMHLQQSHPYNGSDSVMVGNGEFLPITHTGSTSIASSSGKIPLKDVLVCPNIAKSLLS
VSKITTDYPCGFDFDCDNVRVYDKGTKKVLLQGRNSNGLYKLRSLADHAFFTIRRVAASDEVWHQRLGHPNPLILQHLSS
TRTIMINKSSKSQCAACKLGKSTRLPFEASSYAATRPLERIHCDLWGPAPVASVQGFQYYVILVDNFSRFSWLFPLKKKS
DFMSVFVAFQALVQNQYCTKIGSFQCDGGGEFISTSFLQHLELNGIKQLISCPHTPQQNGLAERKHRQITEVGLSLLFQS
CVPHKYWVEAFFTANYLSNLLPHSAKTEATSPHQILHKRAPQYALLKVFGCACFPTLWDYAKNKFDPRALKCVFMGYSDK
FKGYRCLLPTTGRVYISRHVTFDEQSFPFSNDYRHLIPTPQTTLMTAWFRSLPPIITEVTSSSSSSGSSGSDRTTDTSED
FGNSQAIQCRLRIQKPRQISETNTPLITTVSAPLQASGSTRDHTGQTVSTGEASSSSSSQETEQAPVKHNMVTRSKSGIV
KPNPKYALLTEHTTLKEPNSVAEALQHPGWTASMHEEYDNCIETNTWSLVPKSPDMHVLSNKWLHRIKLGSDGTVKKLRS
RLVAQGCGQEEGIDYWETYSPVVRTATVRLILHTATVMKWSIKQMDVANAFLHGDLTEVVYMRQPAGFVDKTRPDHVCLL
HKSLYGLKQSPRAWFDKFSSFLLEFGFKCSVKDPSLFIYSKGKNVIMLILYVDDMLITGNASEIQQKFLTEINNQFRMKD
LGQMEYFLGIQAKFHDSGLFLSQERYALDMLASAGMSECSDISTPLPIRVNKVPDQDKLFTSPSYFRSLAGKLQYLTLTR
PDLQFSVNYICQKMHAPSLSDYRLLKRFLRYIKGTIDYGINFAQDTDFTLRAYSDSDWAGCPHTRRSTGGFCTFLGSNII
SWSSKKQPTVSRSSTEAEYRSLSETASELSWICSVMREIGVPVLVTPELYCDNLSSVHLTANPTYHKRSKHFELDYHYVR
ERVALGALVVRHVPAYLQLADIFTKSLPYAAFDDLRFKLGISQPPTPSLRGTINQ
>Copia-90_VVi#LTR/Copia 42-4603  [Vitis vinifera]
MATPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLVHHLSENRHASEETMGTETKETHDQSIETWSHNDG
LLTSWLLGLMTEEVMLLLDGTETAYDVWNSLEEKLLPMTKEKEVQLTNRLRGLKKGTRSLDEYLREFKGICDALAAVRKP
VSDLDKVFQLAQGLGTKYMDFRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENKESINHEQAYFTQRGRGRNRGGRFL
SRGRGFTPAGRFNHNATSDQRQNVHPSTRNPRNSFNNQLPPQQKLQKSEGTLICQICNKANHSALDCWNRFDYSYQSEEI
PQALAAMALNEEEKDPNFYVDSGATTHITNDPGKMSQVIPYKGHDAIFVGNGEALRISHIGEARLKTKHRDLKLKKLLVV
PEIKKNLLSIGQLTSDNPCSIEFSSTGFVIKDQLQQVLARGTKKGGLYALEENVIQAMTVTRSSKASSEVWHQRMGHPQT
KSIKLLQDKNFIEVSSWMKSATVCVSCQLGKSCKLPFGLRNKISSNPLDKIHCDLWGPAPNNSTQGYKYYVVFIDDHTRY
TWLYPLRRKSDFFECFLKFQNLVENQLERRIKIFQSDGGGEFQSIKFQNHLSKCGILQQVSCPGTPEQNGVAERKHRHIV
EMGLTMLFNAKLPLSLWVDAFLTAVYLINRLPSTVLKMESPFFMLFKQYPEYRSLRIFGCQCFPYLRDYGKNKFSPKTYP
CVFIGYSSLHKGYRCLHPSTKRVYISRHVIFNENCFPYANSLVKENHLQIPIEMVSFSTSDASCETSKIDHQTKSWKENT
ANQSSNSKKCNHCPCTTEQRNQFSVEGRISASCNTNQNTEASCVNPTGTPTAVATEISTVAASTNDHNTVITTETPTDVA
LGASGHNSNTATTTGTLSQIESTSSYKPANVSNFPDISKHLVVDLSFPQKWQKNEHVGPSPQNKSTSHSADDEVPDISKQ
IVVDISSPQGQHTDNKGTHMITRSKLKNDPSLKSQMVTFAATRSDISEPKTYRTTLKIPHWLKAMQEEIKALIQNRTWDL
VPRPPTANIVGSKWVFKTKLKEDGTIDRYKARLVARGFSQIPGLDFGETFSPVIKHTTIRLILSLAVTLGWTMRQLDVKN
AFLHGFLKEEVFMEQPPGFINEDLPNHVCKLNRSLYGLKQAPRAWFDRLSQCLLHLGFYCGKADSSLFILRKGQSIVLLL
IYVDDIIVTGNDNNIISDLISTLSSEFSLKDLGSLHYFLGLEVKYLPNGLFVSQTKYTRDLLEHTKMMECTHINTPMALK
SIITPSDEQPIDPTRYRQLVGSLQYLTFTRPDIVHAVNKACQHFQAPTKADLRAVKRILRYLKGTMEHGIRFFKQSSLRL
TGFCDADWAGCTNTRRSTSGYCIFLGANCISWSSKRQPTVSRSSAEAEYRSLASSAAEITWLTFLLRDIGIQLREPPQLL
CDNLSALHMTVNPVFHARSKHIELDYHFVREKVASGVLITRFLPSSLQVADIFTKALPKTSFQVFRFKLGVHKLPLTSLR
G
>Copia-87_GM#LTR/Copia 385-4506 via tfasty with Copia-97_GM, 89.0% SW:5200, 2 frameshifts. [Glycine max]
MASSGPILSFSGTPTITTAKLNWKNYLSWSASVELWFLGQGHHDHLEKDAEAVPDDRRPEWEKLDYQLCAVLWQSVEADV
LEILRSFKTCCSFWKKAREIFANDIQSLFDATMKVTALKQTSHDMIAHIGKARAAVEELKRFLVAESLEEVNRKLDKFYM
VLILRSLHSDFDHVRDQVLAGDQVPSMDSLITRLLRVPHALKEENPADVVETSAMAAPRGRGGGRNSRGGRGGRGGRPQC
TYCKRMGHTQETCYSLHGFPDKVAQVTQTETEKSESKFSDKEYQEYLKLKSEKSSSQTSSSSVPCYSTACISQSIDGPSP
WILDSGASDHISGNKSSFTSISFPKIPHLVTVANGSKVAAQGSGHVSLSSSLKLDSVLFIPQCPYNLISLSQLTRSLNCS
VTFTANSFVIQEHGTGRLIGEGRESRGLYYLKPNFSVSCSATSNPKLLHDRLGHPSLPKLKMMVPSLKNLRVLECEPCQL
GKHVRSSFPKTVQRCNSAFSIIHSDIWGPSRVSSFGFRYFVTFIDEFSRCTWVYLMKDRSELLPIFVSFLNEIENQFKTT
IQVFRSDNAKEYFSHDFSSLLSSKGILHQSTCPHTPQQNGIAERKNRHLLDIARSLMLASHVPTHHWGDAVLTACFLINR
MPSSSLENQIPHSIIFPHDHLFHVPPRVFGCTCFVHNLSPGLDKLSARAIKCVFLGYSRLQKGYKCFSPSTRRYYMSADV
TFFEDTPFYPSSTDHSSSIQNVLPIPSPCPLDTSNPDVSEVPSSPPHPTEVASPPLLTNQRRIQQVGPSIPEASFHDSPP
SPINPQAMDPATSHPSDSDWPIAIRKGTRSSRNPHPIYNFLSYHRLSPLYSSFVFSLSSHFVPSNIHEALSHPGWRQAMI
DEMQALEHSGTWELVSLPPGKKAVGCRWVYAVKVGPNGEIDRLKARLVAKGYTQIYGLDYCDTFSPVAKITTVRLFLAMA
AMRHWPLHQLDIKNAFLHGDLEEEIYMEQPPGFVAQGEYGLVCKLRRSLYGLKQSPRAWFGKFSHIVQLFGLKRSEADHS
VFYCHSSPGKCVYLIVYVDDIVITGNDASKIIQLKEHLFSHFQTKDLGYLKYFLGIEVAQSGDGIVISQRKYALDILEET
GMQNCRPVDTPMDPNPKLLADQSEPFSDPERYRRLVGKLNYLTITRPDISFAVGVVSQFMQNPRVDHWNAVMRILRYIKG
APGKGLLYEDKGNTQVSGYCDADWAGSPIDRRSTSGYCVSIGGNVISWKSKKQTVVARSSAEAEYRAMAVVTCELMWVKQ
LLEELKFCEVTQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKDIVTEFVNSNDQPADILTKSLRGPRIQF
ICSKLGAYDLYAPA
>Copia-86_SB#LTR/Copia 7-4393 via tfasty with Copia-74_SB, 1 frameshift and 4 stopcodons. [Sorghum bicolor]
MVSRPSCLPFRQRCFPARRSHGGVQRRVKEVTSAVEEESHRSRRMGDTGASSGERVCESSLMWPMLTRSNYAEWAMMLQC
NFETLEIWDTIEPGSDKVKRSRDRQAMAGILRSVPQEMWQLLGSKKNVKEAWGAVKSMRIGAERVKEANAQRLLKEFENI
KFKDAETVDEFALRIGALAADLRTSGETMEDTRVVKKMLRVLPQRYAQIAISIETLLDLKTLTIEELVGRLKMAEDRFGI
EETTDRMGNLLLSxEAWATKNRHRLMPEGTSSGGGGKKRYKQKGGGGGNREHGDRGEKKDPVVQADNDGAPRRKGRCRNC
GIYGHxAEDCKKPKKERNEEAHHTQVDAEQPAILLATVNVVRAHARDVAHAHDVEPVRGHVNRHIIHLNEKKVFPGDGDQ
RRDIWVLDTGASNHMTGCREAITSLDTSVGGSVRFGDGSLVEIAGIGSVLLQTKHHGHKVLSEVYFIPKLKSNIISLGQL
EEGGCKVVLEDGFCDVFDTERLLLARAPRVKNRLYLLTVQLAAPVCLTMKKDDTAWLWHGRYVHLNFRALRDLGLKGMVE
GLPQLDRVxEFCDGCVLGKQHRLPFPQVGSYRANKPMDLFHADLCGKIKPSTAGGKNYFLLIVDDYSRYMxVEFLSTKDE
AFKCFKKVQALAETERSCRLRAFRSDRGGEFNSVEFRQYCDDRGLKHFTTTPYTPQQNRVVERRNRTVVEMARCLLKSKG
VPGELWGEAVATAVYLLNRAPTRSLKGRTPYEAWYDRKPKVHHLRTFGCLAHVKITGPGVTKLSDKSVQMVFVGYETGTK
GYRVYDPRSKKLSVSRDVVFEESKGWDWNQIPHQNSLGSALEVEEYTVARSGTVTEHADAETGNAAGLENEGPASQVDWS
IDDGLDAGPVHATPPGSPVGQGIAFATPPTGESVDSEGVPQRFRILSNLLDTTDELTNFEYSGVCYLAAEEPKSVEAALG
EQCWREAMVAEMDSIQENKTWELSALPAGHRAIGLKWVFKVKRDPEGNVIKHKARLVAKGYAQREGVDFEEVYAPVARME
TVRLIIALAAQRGWQVHHMDVKSAFLNGDLLEDVYVQQPPGFVVKASSGKVLKLKKALYGLRQAPRAWNARLDSELVKLG
FERNPLEHAVYRRASKEGPLIVGVYVDDLIITGPSSTSIDSFKKEMMSSFSMTDLGLLSYYLGIQVDQQEGRTTLCQSSY
TLKILEQAGMSGCNSCHVPMENRLRLTKNDKSAHVDKTKYRSIIGSLRYLVNTRPDIAYVVGIVSRYMEEPRGGHWTAVK
QILRYLAGTVHFGVVYKKLVSTSSLVGYSDSDLAGDIDDRKSTSGSVFLLGSSLVTWMSQKQRVVALSSCEAEYIASANA
ACQGIWLSRLLGELLGIQAPKVKLLVDNKAAIALSKNLVHHDRSKHIDTRYHFIRDCVERGEVDIDHVSTNDQLADILTK
ALGQVRFVELRKQLGVVDVQRD
>Copia-89_VV#LTR/Copia 702-4715  [Vitis vinifera]
MLNGTNFKDWKENMMILLGCMDIDLALRMPKPDELNEQSTQEDEVYWGKWERSNRLSLMIMKRGIPEAFRGAVTDEVTNA
SDFLAEIQKRFAKNDKAETSTLLASLISMKYKGKGNVREYIMEMSHLASKLKALKLELSDDLLVHLVLISLPAQFNQFKV
SYNCQKDKWTLNELISFCVQEEERLKQDKTESAHLASTSKDKGKRKNKDNKVAASNGPEQKKQKVEVTCFFCNKPGHTKK
ECTKYAAWRVKKGMFLTLVCSEVNLASVSRNTWWLDSGATTHICVSMQGCLSYRKPSDAERCIYVGDGQSVEVEAIGHFR
LLLKSGYFLDLIDTFIVPSFRRNLISVSVLDKSGYCCSFGNNRFTLSINSNAVGTGLLNVYDNLYLLETVPSYNETLHVE
SRGTKRKLNKDNSASLWHKRLGHISKSRVERLVSDGILDSLDFSDFDICVECIKGKQTKTKKLGANRATDVLELIHTDIC
GPYPTASWNGQQYFITFIDDYSRYGYLFLIHEKSQSLDVFKTFKAEVELQLNKRIKSVRSDRGGEYYGRYDGSGEQRPGP
FAKYLEECGIVPQYTMPGSPSMNGVAERRNRTLKDMVRSMISHSTLPEKLWGEALKTAAYILNRVPTKAAAKTPYELWTG
RKPSLKHFHIWGCPAEARPYKPHEKKLDSKTVSSYFIGYAERSRGFKFYDPAIRSIFETGTATFFEDVEFGGRNQARNIV
FEEEEGSTIAFDNVQVSLPIIDQEVNLDPQPTDNIVQPLIANEDIAPEEQTQQPQENMPLRRSTRERRNAISDDYIVYLQ
EREVESGMMEDDPINFQQAMKSSNSQKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIFKTKRDSNGNVERYKARL
VAKGFTQKEGIDFKETFSPVSTKDSFRIIMALVAHYDLELHQMDVKTAFLNGDIDETIYMVQPENFVSEDSKNMVCKLTK
SIYGLKQASRQWYFKFHQIIVSYGFEANLMDECVYHKFSGSKYIFLVLYVDDILLATNDIGILHDTKRFLSKHFEMKDLG
DASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSLESQEMQKIPYASAVGSLM
YAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLDQLELIGYSDSDFAGCQDSRRSTSGYIY
LLAGGAISWRSAKQTLVTSSTMEAEFVACYEASNQGIWLRNFVTGLRVLDGIERPLKIFCDNKSAVLYSNNNRSSTKSKY
IDIKFLVVKEKVQSGQISIEHIGTNSMIADPLTKGLPPKVFHEHTAHMGVVSFEDIQI
>Copia-90_ST#LTR/Copia 60-4668 via tfasty with Copia-104_GM, 74.5% SW:3444, 9 frameshifts and 1 stopcodon. [Solanum tuberosum]
MAHYQIPGALLQDGHSSHRPPYFNGQHYSHWKDRFRIFVSSNDHQAWIVIKKGPKPIPGLTEKDGTEKPFDPESFDITKE
QQEVIQTNARAISLLYCAVSGAEYDKISTCETAKEMWDKLEVTYEGTTKVKEARISSLVNEYELFKMAEDENVESMFSRF
SKIVCELKSLGMVYSNALQVRKLVRSLPKAWETKAAILEDGDLQKMTYDELRGNLMAYEQNHINRYNKDDKKKTVAFTAE
TSEIGEEVDENQDEGMALINRGVRQMLRQRRQRPQQDFKNNDFKRNDDRCYYCGKPGHIKQNCPERRRRNNRRNEDPKSL
GAWDQGETTDDDHDEMANLCFMALGETSEVRPFNCPNCNDLQNSLDMVADELQKVIDEYNKIAQEKKDWQILLEASQIEV
DLLTEELEEVKMQLNSIRKSPSHSSVRSNRTTLYRRNSPNHSSNRSNRSISNSHSPETSVKITCYTCGDLGHKSFNCRKY
SSGKWIWSQKLLIIKDPKILGYLKETNLIVLQEQSKKTYKKGMWVLDSGCSRHMCGKKENFKTIKRIDGGCVRFGDNAKG
EVTGVGTITLSSSCDLVEVYLVEGLKHNLLSISQLCDAGFQVTFNTASCIIKHPEKKLTLIGDRVNNIYVLNNVDSSISY
CLTAVSSDPWLWHRKLGHASMHALEKLSRLELVIGLPKLKFEKDHICDACQLGKQTRSSFKGKDIVSTTKPLQLLHMDLF
GPTRTASIGGKRYAFVIVDDFSRFTWVIFLTHKNEAFANFEVFCRRVQREAGYFITTIHSDHGGEFENKDFEEFCAQNGF
TQNFSSPRSPQQNGVVERKNRSLQDTTRTMLLDRSLPDHFWAEAVSTACHILNRCLIRPILKKTPYELWRGKKPNISYFH
PFGCKCFIHNNGKNNLGKFDPRSDEGIFLGYAPISRAFRVFNKRTLSVEESVHVVFDDTNPRVQEIEAGDDEIASPNQLK
IFQKFHSKLTLKSQLLQRxESTTPADKANIPREWRHNASYPENFILGKPDDKIQTRSSLRKQASVALVSQMEPKRINEAM
EDESWIQAMKEELDQFERNQVWTLIERPKNCSVIGTKWVFRNKLDENGKVIRNKARLVAQGYSQQEGIDYDETFAPVARL
ESIRILAYASFKRFKLFQMDVKSAFLNGFIKEEVFVKQPPGFENPSCPDYVYKLSKALYGLKQAPKAWYERLSTFLLKNN
FQRGKIDTTLFIQRSGSYILIVQIYVDDIIFGSSNPSLCENFANLMKGEFEMSLMGELTFFLGLQIKQSTNGTFISQTKY
AKELIKKFGLEKGKAFGTPMSTLHCLETDAPGKDVDEKMYRGMVGSLLYLTASRPDIMFSVCKCARFQSAPKESHLTAVK
RIIRYLIGTTEYGAMVSSSTSFDLIGYSDADFAGDKNDRKSTSGTCQILGKSLISWHSKKQTSVALSTTESEYLAVGSCG
TQLLWMMHQLLDYDLSFEVVPIFCDNTSAISLSKYIVHHSRAKHIDIKHHFIRDHVENGDFSLEFVDSENQLADIFTKPL
LEERFCFLRNCLGITCFN
>Copia-90_Mad_pol#LTR/Copia 1971-5597 [Malus x domestica]
MNKLLFLYSEXMDKNYGYSQNKXNGGDFCLADSATTHSILRDRKYFSNLVLAKVKVTTISGQSDVIEGSGKAQIMLPNGT
ILSIKNALYATRSIRNLLSFKDIRLNGYHXETKSVENVEYLCITSNDTQKRILEKLHGLSSGLYCTYIKTVEAYTVMNQK
FIDSKVYMLWHDRLGHPGSTMMRRIITNSNGHPLLSRHIDVSNDNPCKACSQGKLVIRPSQLKVDDESPSFLQRIQGDIC
GPIQPPCGPFRYFMVLVDASTRWSHVCLLSTRNVAFARLLAQIIKLRAQFPDHPIKSIRLDNAGEFTSQTFDDYCMALGI
DVEHPVPHVHTQNGLAEAFIKRLQLIARTLLMKTKLPVSTWGHAILHAASLVRLRPIANHQYSSIQLVFGHQPNISHLRV
FGCAVYVPIAPPQRTKMGPQRRLGIYVGFDSPSIIRYLEPLTGDVFTARFADCHFDETVFPSLGGEKTVPEERQELTWVV
PTLSHFDPXSTQCENEVKRIVHLQGIANQMPDAFNDASKVTQSHIPAANAPARIDVPVGQNKVAANDSSSARLKRGRPPG
SKDSAPRKRKMRAQLNPNDIIQEKELNDKSTIRDSVLPEKENVLDETHVPEETEVHESKEISINYACTNELWDRNEIIID
DMFAFAIATEIILSDDIEPRSVDECRQRQDWPKWKDAIQAELNSLERRSVFGPVVQTPPGVNPVGYKWVFTRKRNEKNEI
ARYKARLVAQGFSQRPGVDYEETYSPVMDAITFRYLISLVISEKLDMRLMDVITAYLYGELDTDIYMKVPEGLKLPEATN
KPRGMFSIKLRRSLYGLKQSGRMWYNRLSEYLIKEGYANNVICPCVFIKKSNTGFAIVAVYVDDMNLVGTPEELNKTAEY
LKSEFEMKDLGKTKYCLGLQIEHCVSGILVHQSAYIEKILKRFGMDKAYPLSTPMVVRSLDIKKDPFRPKEDDELVLGPE
VPYLSAIGALLYLAQCTRPDIAFSVNLLARYSSAPTIRHWKGVKDVLRYLRGTTDMGLFYSDKPTNEQILVGYADAGFLS
DPHKARSQNGYVFTNGDTAISWRSTKQTLVATSSNHSEIIALHEASRECSWLRSMIHHIRNSCGLPSKTDTPTVIHEDNA
ACVAQMKEGFIKGDKTKHISPRFFSAHELQKAKVIEVRQIRSNENLADLFTKSLPKCTFQKLVQGIGLRRLTDLKNAESG
GDTIQGEHP
>ERV1-2_XT_pol#LTR/ERV1 2648-6070  [Xenopus (silurana) tropicalis]
MPFSTLECLVDTGAARSVLKKSEAPNLKITGELNGIGLEGTSVPLEETVETEVFVGPLKTSLSFVLSDSVPCNLLGKDAL
MKLRANILYTKDGPIVTANSSSKDVNLFESVIPLMATRVHGNLEIPPDLEGLPSSLWATKGGTTGLIHRADPVTVQIRPG
AKLPRVPQYPLSQKQINGIRPQITSLLQQGILIPVKSPVNTPLYPVAKPGKQGEYRLVQDLRAVNKIILENTPIVPNPHT
ILGNIPPEASWFSVFDLVDAYFCVAINADCQYLFAFTYEGEQYTWGRLPQGMVSSPSEFGQVMKQVLDRWQPIQGTTVVQ
YVDDLLLTAISKDLCREASISLLQHLHEEGCKISPSKLQYCQQKVIFLGHCISRGTKHITTDRILIIQKASYPQSAKQVR
AFLGLVGYCRQWIPNMSQLATPLYALTSQAGHIILTEEQKSSVDQLKLAVLRAPSLALPNYKKPFFLFCHEQGGQASGVL
TQKAGDKQKPVGYFSCKLDAVISAAAGCVRAVAAAAMLVEKTADIVLGSKLFVMVPHAVHTVLQSLTTKHLSAARLTKYE
VGLLVPANITLLRCNVLNPATLLPTEHQGESENDLEHDCQQVMEQFYSPPNPVQDEPIPNADLVLFVDGSRLQHPEGGFG
AGFAVVSGSEVLYSESLDPSQHSAQSAELLALIKACELAKGQTANIYTDSRYAYGVVHDFAQLWKHRNFLTSSGKMIKHA
TLIKELLEKVQLPRDVAVIKCQAHQKIKDDITAGNDRADKAAKKAAFMVLTVIPADELPTSVTLDILKNLQKQAGTQIHT
KWINKGCKVENDIWKHEDGRLCAPPVLFPLLANITHFPSHVSKGGMISMVNKLWFAPGFAQHATDFCKKCMICAKHNTGK
TEKTPLKHLVKPFYPFQRLQIDYIQLPKCNTYEYVLVCIDMFSGWIEAWPVTKATALITAKKLITEIVCRYGLPETIESD
RGTHFTGQVFAEMLKGLQIHQHLHTPYRPEASGRVERANGTLKTKLGKLCEQTKLTWVQALPLALSSMRHTPRGPHQLSP
FEVLFGRSPNTGLFFPQELQGEHASLTDYVKQLHKQLTNLHGKVFSSLPDPETVFGTHSLQPGDWVVIKRFVRRHLEPRY
DGPHQVLLTTATSIKVEGKPN
>ERV1-2_AMi-I_1p#LTR/ERV1 677..2179[Crocodylidae]
MGGSGSKDVPTPPKGTPAGYMYAHYGQKSCKFLDKWNWYTRDNPPKQFPSEGTFDLDKLIHLRKVLESRGSKTPQTQWDV
YFDWYEEGSKRQQESRVRSLKDSQEKLKAEIKQLKNGYSPGQANLPSAPPTPLYPQLTHETETENESVEDILESTSCLAQ
PPPYPEHLPPELETPPCSPEGASAGSYSPVGLNNSRPKKGPIIQVPLRQLPGAQGLVTVHAPWTPGDLRNLVKEFPNIRE
KPQKFKDELQTVINCYNPTWSDMNQLLRAVLPSEVRQRLTDEADWPQRDPGHGTDLATARRHLLEAISVVCPKKTDWAKI
NNCKQNKGESPADYLDRLKEVFERHSGIDEATQNAREAIAAAFVQGLQPKLGDQLRNICVGWQTKPLNELVTVANHCLAC
QERKKENNEAQLMALQLQTYHPRGRGRGKGNSRGRGRGRGCWQTNVSSIDRSSCFYCGQTGHWKGECPNRPXTSTPSTGN
SADQQHQQFSLPLPQNSLSQY
>ERV1-3_DR_pol#LTR/ERV1 2671-6100 via tfasty with PRIMA4_pol, 3 frameshifts. The missing N-terminal region (2014-2325) appears separated by a 250-300 bp insertion. [Danio rerio]
KSSVSFYLMSAQAVPHISVCKGKHQSWADLGPFVKQCLEVKDWISREXGVEWSEXSQAFRVDSETETAVSRTVTAIDKLC
VKNSCMVDFNAADIHPALAEIPSELWAKSKYDVGLIKGCDPVTITAKSDYRPCQQQYPLKREAIEGITPVFEALLEQGVI
VPCNNSEVRTPIFPVKKIRDNGMPTEWRFVQDLQAVNAAVKQRAPLVPNPYTILSQIPEKSQFYSVVDLANAFFSVPVDK
DSQFWFAFNFNGKGYTFTRLCQGFTASPTLYNEALLRSLEPLTLTAGTALLQYVDDLLICAENEETCVKDTVTLLKHLAK
EGHKVSLTKLQFVKQKVTFLGHVITPHSKSLSEKRVSGIKNVPKPLTKKQMLSFLGMCSYCRTFIPNYAILEQPLRALTL
GKGMKSTDKLEWTTEAEQAFVNMKLQMAEAPALGLPVPTKPFVQMVDERSGFMTSLLLQDHGGRLRPVAYFSSKLDPVAA
GLPRCLRAVAAAEKAVMASRDFVGYSDLILMVPHSVSMILQEQKTSHLSTARWLRYHTILLDMPNVTVKRCTGLNAATLL
PTEEDGEEHHCCLTALEQVCTPRPDLSDEPLENCDNVLFVDGSAFKDPQTGQNKVGYAVTTEFDVVTSGKLPGHYSAQAA
ELVALTEACKLMAEKEATIYTDSRYAFGVAHDFGALWKHRKFLKSDGRPILNAPLVAALLDAILLPDKLAICKCAAHTNN
KDSVSVGNSRADGAAKVAASQDKDNSECSLLSVDDNNDVCSSLQDMQTFATGLEKNKWRQSGCVMKDNVWKCAEGKACLP
KHFFQHYAKLLHGKDHVSKTAMVAQMNELWFTKGFTTFADNFCRRCVICNTHNVARAIKVPQSSHPPPTGPFEYLMMDFI
ELSPCNGKRYCLVMVDMWSKWVEVFPTSKQDSAAVAKALLTEIVPRWGIPRKISSDNGTHFVNEAIKQVGQYLEIDLRTH
CSYHPASGGAVERENGTLKNKLAKCCEDTGLTWVQALPIVLMYMRMRKRSKMNLSPFEILFGKPPRVGVNGGKQQLPSTD
VCENDMLNYCKEMSHVLSDVCVQVKAAQGKAAERPLHSLRPGDFVVIRDHEEKELESETLRWLGPFQVLLTTETAVKVAE
RATWVHAGHCRKIPSPEEDSTRE
>ERV1-5_Crp-I_1p#LTR/ERV1 5985..6671[Crocodylidae]
MGSGQSVVKETPLAEILGNWKKIDGTQGLSRRRAVVLCKVDWPTGTRGTPLEWPAGGSFDQDRLTFLRHELEDKFPGQVD
YWYVWDNWVTTRRQKREKQELKWQDCTGNLCAQLAGSAPPHAALLPSLTPSVPSPSSVPPLYPSLPHPVSISTALQAPLI
SMALPPPQGGQIALEAHVYRPFSPQDLISWQQQMPRLRDDPEKVLQTIRGIFRAYDPTWADVQQLLETLFTPDEKFAILD
ANRRWADADAACTPWPAQDPGWNYGDQQQVGLCRTVRGGLEEAIRLAGQKPANWSKIRECQQGPEEHPSAFMARLLKQIR
MYGGGLDPEGEVNRPVIVSSFVDQSAPDIKKYFSKHVPDWPGKPLEEIVRLATFVYNGRDEERINEKRKQRREEASILAA
ALQVPYGGRGRGGRGRGRWYPDVRGGDRAESEYGPGGRGNWGNCNYCKQPGHWKRECPLRPRGAPWMHQEPVPPPPPNAL
PMPPFPPNAPLDPNATQLKAETLGALGELEWDLGPQSQLYIKIGNRFEPFLIDTGASLSTLTFLPDSLSEDRVLVQGIEG
NPHLVPMSAPIPIELGILKLSHKFVVMPGGPVNLLGRDVLGKLGARIQCAPEGFRLIVPEEAVESLLALSASFPDIPKEL
QEVPQGLWSMDPTDVGLLKSATPVRIKVKDGSPPSVKQYPLPREAEEGISVLIDSYVSQGVLVPCSSPCNTPILPVKKPK
PGPDGKPIYRFVQDLRAINNYVIVPHPVVPDPSTILTLIPCSANCFTVVDLCAAFFSIPLHPESQYLFAFTWKEKQLTWT
RLPQGFAGSPTIFSRILTDDLKDIVLPAGSTLVQYVDDLLLASPDCNACLSDSVALLKALALKGHRASPSKLQLCKTQVN
YLGFVIRPGERLLSPDRVQAIQDHPRPVTKKQLRAFLGATGFCRPWIAAFGETAKPLVQATTSVAADPLIWTREMDAAFV
TLKRSLMSAPALGLPDYSKAFFLFSHERQGVASGVLLQYLGDRPRPVAYYSVQLDPVIRGSVSCVRSIAAAAVMVERSRP
IVLGHPLTVWVPHEVEILLKQHTTQALSPQRAHKYELILLAADNVSLRRCNVLNPATLLPLPDDGEPHHVCMDVVAESGK
PRQDLQEKPLPNSDLILFTDGSSFYSDGRRVSGYAVATLWEVVEAASLPPSTSAQAAELHALTRACLLASGRRVTIFTDS
KYAFGVCHATGQLWKQRGFLTSSGSKIANGNLISALLDAILAPLELAVVHCYAHLQSDSDVSRGNNLVDAAAKAAALQPI
QLSFSDATNATDMTFPPLDWRHLYDDVPADELADWKRWEGELSPDNIWRIGGKPVLPKRYLLQAVRYFHSLGHAGIEGTA
SAILRWWSAPHVYPAVKRVLSACSTCLAFSARQKLDAKSKGGRPWAVFPFQRIQIDYADMPKSAGYQHLLVIVDQLSGWP
EATTTRKADARSVVKFLMKDIIPRFGVPEVIDSDRGSHFTAKILEEVYRCLGVARQLHTPYHPQSAGQVEWMNQTLKTMI
AKYCKETGLKWPEVLPIVLWHIRRTPRMPLGLSPFEILFGRPALVPGTYVPAHASLLDGDEMLSRFVLRLQKEFKENNTQ
AQLFQAPPLGLQIHEYRPGDWVLVKKIPRTSPLEPRWEGPYQVLLCTYSALKLAGKSSWIHHSHVKKAPNPDPASKPE
>ERV1-4_Gav-I_1p#LTR/ERV1 291..3956[Crocodylidae]
MPASLESGWLVPEASTSSYLRSGTQYGPXPPSKPKKALQMPLRQLPGQGPNGESTVTVHAPWTPGDLLNLVKQFPNIREE
PQKFKDELETVINCYEPTWADINQLMRSILPSEVRDRLIKQAKWPAQDPGRDGRLVSARERLLEAILKICPRKTDWAKIN
NCKQNKGESPADYMDRLKLVFERHSGIEKAAETAPEAVAAAFVQGLLPKVQEQLRTIAVGWQTKTLAELITIANHCTTCQ
EKKKEITETKLMSLQMQTLDSLRNSNVITAPLLSLNQEDPFVSCVINGISTKCLVDTGASRSTLRAEEFSTTPLSSDVIN
AVGISNQIVPHPVSQPLQVSLGPVSDQHAFLLSPCSPVNLLGRDLLCKLGCTIYCSPNGVYLDVPCVNELAVLAVLDSSP
PAPEFSDLSVLQEEIIQAVPPSLWSQHANEVGQIHTAQPIRIKLNPAKPLPKVAQYPLRPEAEDGIRPVITALLKQGIIV
PTKSPCNTPILPVRKPGKNTYRFVQDLRAVNSVVLPTFPVVPNPAIILSCIPPDACYFTVIDLCSAFFSIPIHPDSQFLF
AFTYQGLQYTWTRLPQGYTESPSLFSQILKKDLDDIVFKGGSVLVQYVDDLLLASTSLEACKADSLTLLTSLALKGHKAS
KEKLQLCLPRVHYLGHDISAGERLLSSSRIEAILKVPKPTTVSQMRTFLGMAGYCRQWILGYASIVKPLQNLTLVNTPEP
LPWTSEAEATFVSIKQALSQAPALGLPDYTKPFFLFCHERDGFALAVLTQKHGDKHRPIAYYSSALDPVAAGFPPCLRAV
AAAAITVELSCTLVLGSPLTVAVPHAVAALLLKTKTQHLSNARLTKYEILLLSAENVTLTRCPVLNPASLLPTPSDGEPH
DCITVTAHLTMPRTDLKDTPLQNPELVFYVDGSCHRSPKGSLAAGYAVCSQYDVIESHPLPDVHSAQVAELVALTRACTL
ASGASVNIFTDSRYAFGIVHDYGQLWKQRGFLTSGGTKISNGPYVEALLNALQLPSAIAIIKCQAHQKPYDDVTRGNALA
DSAAKAAAISTPQATPVFLSIPTAQSPLASLHDVALLQDQAPEPEKCSWRLAGCLLHPDHLWRSPDGRLVAPMVLLPYLA
RLHHGMAHVSKGGMIEAVKLDWFAPTFPSVAQQYCYACPICQAHNVGKSVKTKQAAHPPPWGPFVNLQIDFIQMQKCCSY
EYVLVIVCMFSGWVEAYPCAKADTTTVSKRLLRDFIPRFGIPLSINSDRGTHFTGQIMKEVCKVLQIQQNFHCPYHPQAS
GQVERQNGILKNKLAKICAETHLKWPDALPIALMSMRSTANRKTGLSPHEILMGRPMRLPASPPVASHLCDIHLLDDTIL
DYCKALMKCVKNFHSQVQAALPKEPDEPCHSILPGDWVHIKVHQAKRLLAKRICHYRAKRMCPNDTTMPFGTGKRPLPSS
WFPKWGWLVVTWVILSFSSWIILYELKDSPAKKNFINQTMLQNRLRRSLPPWQVHQNVFLQLSYQYAIDLNVSHCWICSH
VPLHSTGGIPMIPVPLNATQMLTPYYSDLYGNKTWQDVNCNRSDYIQLAYATPGKFCWTCNGSRVAVGISKCKIEFKVNG
AWLSNNSWIPNYSPRSEFSGYYSQWMMAPHCNTGGFTALAGHYFVCGDKAYKNLPSGWEGTCYVSAAHSAFTIKSHLPKG
KIRNVREITETQRFWGIMFPNYGAGLAMSEIKKVAASLEKIANATAIGFHDINDEMKEIRHDVTLQNRLALDYMLASKGG
VCALIDTECCTYIPDNSEEIQDLAQHIQKEAAKLHESDSWNLSTWFSSIFSSLGSTIIHGLLILFVIFIGICLVLMLIRC
CLNCAAKQMQDSLSTSMQRNEVYNMYVEIANSKEEEELEVKRLMAINI
>CfERVF2_pol#LTR/ERV1 1950-5505 via tfasty with CfERVF1_pol, 8 frameshifts.  [Canis]
RGPDSDTPLTQAEPRVLLQVAGKSISFLLDTGATYSVLPSYSGASFPSPVAVVGIDGTSSIPRTTPLLSCSLDGFPFSHS
FLIIPSCPAPLLGRDILHKLKATIRLSPSPTVSTHLLLPLISPDPSPPPHLPLPVNPQVWDTSKPIVATHHPPVKIQLKD
QTFFPSXPQFPISETHRRXLKPIITDRLRQQGLLIPXSSPXXTPILPARKPSGAYRLVQGXRLXNEAAXPLHPVVPNPYA
PLXXVPSTATHFSXLGLKDAFLFTAPPHPDSYXLFAFXWGEPDTHTSGQLAWTVLPQGLRDSPHLFGQALSRDLQQALSQ
XSTLLQXVDDXPLCRPSXPSSQEDTALLLSFLGSKGYRVTPSRAQLCTPTVTXAGYILNPYTXKTLTGDRXRDLRXTRIS
GXPXPRXSADGXLSFLGLVGFLRHWIPDSALLARPLXRAAKXTPRGPXTDPSXXKHLVXSKXXDCLTSGPVSALPDPPKP
PYLXTDERSGSAXGLPVQPTGPTXRTXAYLXXQLDVAAQGWQPCLRALAGAASLTKEALXLTLGQRPLAVFSSHRLGHDL
LSQKPVSHLXPSRLQLXHLLFIENPDIYLSTSPRLNPATLLPTPSTNPEPSHSCPQLLEELTPPHPGLSDQPLPNPDRXL
FVDGSSLIAPDGQRHAAYAVVTLDAILEAVPLPLGTSSQKAELXALTRALHLSKGQRVTIYTDSKYASLITHTHSVLWQE
RGFLTTKGTPIIXGPLISKLLEALSLPTEVAIVHCHGHQSSKDPVSRGNNKADSTARATALGSSPAPLLFLNTPHSPSYT
DEETQTLKRMGGIAGGKGWIFIQKKLALPNHLAPMIISDIHQSLHIGPKALHQFLEPLFHYPHLRKXIGEVHQSCKTCST
VNAQGGIRRPGPNHQLRGHQPGEDWQLDFXHMPRHKSFRYLLTLVDTFTGWIEAFPTARETADVVATILIEHIIPRFGLP
RTLQSDNGPAFISSITQQVSESLNITWKLHIPYHPQSSGKVERANGLLKEHLTKLTLETRLSWPTLLPLALTRLRATPRG
PSGLSPFELLYGRPFLLTQNLPSSPPPLLSYLPYLTLLRALLRAHADSVTPTPGEPTPDTPQALAPGDSVLLKELHPKTL
QPKWTGPYTVVLTTPTAAKLIGHHPWVHVSKLKRAPSQDVWTAQPLGPTQIRLSRHPPPPGPTS
>SloEFV_pol#LTR/ERV-Foamy 1690-5082 via tfasty with SFVO_pol, 8 stopcodons. [Choloepus hoffmanni]
MELQVQHRGKIFKGHYDSMAEVSCFPKEFLNDDNPVDYEEIQTIHGKQKMPMYYLTFKVDGHKFVGQVIPTELDYALIAA
KVVPWIKLTNCEVELTIKLPLEEYKNDIIKSSNLSEQGKDKLRLLLHKYDSLWQKWEKQVSxRKIPPHHIATGTVAPKPQ
KQYHINYKAKLAIQTVINDLIKQGVLLHQNSSMNTPIYPVPKTNGSxRMVLDFRAVNKVIPLIAVQNQYSIEILTQMQRE
QYKTTLDLSNGFWAHPITKESYWLMAFTWEGKQLVWTRLPQGFINSPALFTANVVDILKEIPDVEVYVDDIYFSNVTEEQ
HLITLKQVLKILLKSGYIVSLKKSEIAKEEVTFLGFNITKEGHGLTAKFREKLLNISAPKTLKQLQSILGLLNFAHNVIT
DFAELTKPLYLVISRAEGQHIQWMEKEGMALQEIIxKLNNASYLENRDIQKPLIIKLNSSPTAGYIxMYNKGGKKPIQYV
NFIFTPAEIKFKPTEKLLTTMHKAIIKGLDLSQxGAQVHIYSPLASPTHIQKTPLPERKGLHSQWITWMTHFKNPQLIFH
HDPTLPDIQNLPQPLSEDNMQILPKYDLTSYTAVYYTDGSAIKNPNPQKTHSAGIGIVKGKFDPNFSIIKQWRFPLGDHT
AQYAEISALEFAVKKAMMDKGPILIVTNSMYLAKSFNEELDIWISNGFVNNKKKPLQHISKWKVIANCKQNKPSIHVVHE
PGHQKQGTSIHTKGNLLADQLAVQSSHMVGMVTKLPSLDKELEQVLDSKSPNPKGYPVKIYIYIYLLENGNVIIERDEGK
RIIPPVMERGKLAQQAHNTFGTIHGGWEATLIKLKNKYWWPNMIKTVRSVVANCEECQVTNASSQIPTPPKTIIHPDKPF
EKFYMDYIGPLPSSHGHEHILVVDDARMGYCWLFPTKAQNANATVKALNFLSGTAIPKVLHSDQGSAFTSATLQQWTKDR
GIQLEFSTPYQPQSSGKVERKNGKIKxVLTKLLYGWPQKWYPLIPFVQLSINNIPSSQTHQTPHKLMFGVDSNLPFANVD
DANLSREEQLSLLQELREELTPAASSSCTSGWKPFIGQFIQERVQKYTPLCPxWKKPTKILTVFDDHTVEILDPLGQxRK
VSIDNLKPTAH
>SloEFV_gag#LTR/ERV-Foamy 132-1724 via tfasty with BFV_gag, 3 stopcodons. [Choloepus hoffmanni]
MAQPQNLDVAGLQVLIGLSGARTPGHQDILTVRVDAGPWGVGSRFARIQIDLQDGNRQPLPQPTYTPAPGPVDLTTDILL
NVSYAQLMAKLGDVPFLTGVYRHGPLYTGHWLPGDDLSHHFLPITMAELALLNNQQIQEEVALLREIICRFQQWQAMGAP
QPQNPPLQPQVIIQPQPGALALPMNHLRAVVGATPNDPQAIALWLGxNVQAIEGVMPINNGPMxKWVVNALLASHATLHV
TDQEAQDWNSTIAAIYQRAHGTLALHHLPTVLKDIANSDGVIVAFTMGMMFSNDDYALVSGIIQPLLPGQAAVVAVQAQL
DILPDDNAKASAFPEIVTEVYQTLGLNILGQPMQHPPGSQQCSNQQGGNGRRQQQTGNQNKGGFRSSHPSQHPPQSPQAP
PIPRNRGNFGGNRGKQDQEGSQGQNHQQPQNHGEDPPRQLRHYNLRPNVNHPxWFNKPEGSSPNPYRQREHQEQQPPQQD
QSKDRGVQSNSQPRRSGGNNRTVHLVQQVHSPPSPTSSRDGTSGPAQGQNI
>RELIK_env#LTR/ERV-Lenti 4860-7466 [Oryctolagus cuniculus]
MATAAANGEMYIKGREAKDLYEQYALKQLSEEENPPVVNPFEGLPEDQQDELAARQQAHLQQVKEELKRWDPDKGKLIEG
KQTLKRFKILGNLMRLWERFELPMLRAYGLIMTIIILIILPSVKTEEQVLGLVENPPAYTYPDINNVPFTCESNIPRSGC
EPTGTLSLIKTKVKNYTIPWLTHAKELVGPWRDLIEQFFSSNCKRSKIECGNYTCHAHNNYTNWTCNGVVPKLTGPLNLI
TKQSISFLTDAGSMECIDITEIKENAPLTCTMRGCSLEGTIYEACDKWKQTMFEVGLSRLCVRPPFALIKCLEYKTYSLS
RDDKSYWGKPNCTSWVTTTCTEEIPFVGPDLTLLGLEHSYLEPYVNNSKERMDYSEWETAFAHDIDPSLIITKIQGHINC
SCVAVKDSLVWMTFEQNRGVQIGEGQEKDLERISHVECSFYYENESYYLNESNIPYLSTPGFGYSMYMNETYKIQWSTIR
DEFSVSFICKNGSEHRYIRCRPPSNNQSTHCFWQAGYEMFHKHFVKTPVREDPGSWTCRTEGEVLYARCTHPLDSKKELG
CYIRDLEWEERMITFLAPYMVVKATPFTYVPVNMSDLTIPIKPMHKKRDFGVTAAIVTIAVSAATVAGAVTGALALSTTQ
LQGDALESLLKVIQEQRAQLGDQSALLKTHAMGLQMLEAHTVQIEQIITILALERELKCEAIGRVCITTIPWNNLSIPNA
TQLADMFKHNHSTWLEWVNATAHLEANITKRALQIIQLQNIAAFKIGQVKTVEQTINTLTDTVSSWLPSWKWFKIGAIFC
MVLVCLPILQHLFSIGRNFTKGYLALRKEPSPPEIEEEEEETPNLEINPGYAQECSSPWPSGSTGFTGL
>CfERVF1_gag#LTR/ERV1 333-2003 [Canis]
MGTSQSKFDSKTPLGCLLANLRTLELDQDLRRRRLIHYCTVAWPQYRLNNQSQWPPEGTFDYQILTDLDNLCRRQGKWSE
VPYVQAFWTLRSRPELCSSCSTFQVLLARSPPPTLPHSTSRDSNLAPPSPLAEPPEDLSRPPVRAPHLSPPPYQPAPQQP
VSPTPSSISETPGPGPASSIPSPTVPLLPAPEPQPPSSPLPSPPISARTRSKNSSPDLVCPLREVAGAEGVVRVHAPFSL
QDLSQIEKRLGSFSANPDNYIKEFQYLAQAYDLTWHDLHVIQTTTLTTEERERIQAAARGHADQVHLTDATMAVGAQAVP
AVEPGWDYQDGQDGRRRRDHMVRCLIAGMRAASNKAVNYDKIREIIQAPDENPAIFLNRLTEALIQYTRLDPACPAGATV
LATHFISQSAPDIRKKLKKVEEGPQTPISDLVRMAFKVFNSREEAAELKRQARLQQKVQLQTQALVAALRPAGSRSQQKG
GTTRTPPGACFKCGAEGHWARQCPNPRAPTRPCPLCHLMGHWKSDCPSLRESSAPQRGGRPETVSPAFQLLGLEDD
>BaEV_pol#LTR/ERV1 2044-5613  [Papio cynocephalus]
GCQGSGAPPEPRLTLSVGGHPTTFLVDTGAQHSVLTKANGPLSSRTSWVQGATGRKMHKWTNRRTVNLGQGMVTHSFLVV
PECPYPLLGRDLLTKLGAQIHFSEAGAQVLDRDGQPIQILTVSLQDEHRLFDIPVTTSLPDVWLQDFPQAWAETGGLGRA
KCQAPIIIDLKPTAVPVSIKQYPMSLEAHMGIRQHIIKFLELGVLRPCRSPWNTPLLPVKKPGTQDYRPVQDLREINKRT
VDIHPTVPNPYNLLSTLKPDYSWYTVLDLKDAFFCLPLAPQSQELFAFEWKDPERGISGQLTWTRLPQGFKNSPTLFDEA
LHRDLTDFRTQHPEVTLLQYVDDLLLAAPTKKACTQGTRHLLQELGEKGYRASAKKAQICQTKVTYLGYILSEGKRWLTP
GRIETVARIPPPRNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESTPFTWQTEHQLAFEALKKALLSAPALGLPDT
SKPFTLFLDERQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPHTLEA
IVRQPPDRWITNARLTHYQALLLDTDRVQFGPPVTLNPATLLPVPENQPSPHDCRQVLAETHGTREDLKDQELPDADHTW
YTDGSSYLDSGTRRAGAAVVDGHNTIWAQSLPPGTSAQKAELIALTKALELSKGKKANIYTDSRYAFATAHTHGSIYERR
GLLTSEGKEIKNKAEIIALLKALFLPQEVAIIHCPGHQKGQDPVAVGNRQADRVARQAAMAEVLTLATEPDNTSHITIEH
TYTSEDQEEARAIGATENKDTRNWEKEGKIVLPQKEALAMIQQMHAWTHLGNRKLKLLIEKTDFLIPRASTLIEQVTSAC
KVCQQVNAGATRVPAGKRTRGNRPGVYWEIDFTEVKPHYAGYKYLLVFVDTFSGWVEAFPTRQETAHIVAKKILEEIFPR
FGLPKVIGSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRAR
NTPNRFGLTPYEILYGGPPPLSTLLNSFSPSNSKTDLQARLKGLQAVQAQIWAPLAELYRPGHSQTSHPFQVGDSVYVRR
HRSQGLEPRWKGPYIVLLTTPTAIKVDGIATWIHASHAKAAPGTPGPTSSGTWRLRRSEDPLKIRLSRT
>ERV1-6_XT_env#LTR/ERV1 6518-8020  [Xenopus (silurana) tropicalis]
MGNLLLYCGTLNRSEWKISTRYPQCRPHLVNMEKGMDYWFGNREHNIPRARRDVIGKILGGFGTVGSVMNSMSIGSLQKD
LESTGLLDSKGIHVQRNLNQILNSMVVKTASVLGPSVLHLQETTVGLLKSSNIAEVARACMEIQIEYSTDLKVTAQALHG
GITPLGIRNSLPEEYRIALNHLDLWINKWMGCNEKECLGTSLIPLAGQELPVYSMAILGIPVSNNQLLFYKLQYKDFIIP
SVAAEPEQVDLSACLHFSSKVLCTPYQIRTVYHSCFHNQSMCPVQVETIKSTYDLVTPINNDKICFQVMTNDEEVKVFFH
SCTATSKLKRGLYCAQDGPIEVVLRNVRIPVPKYLSRDVNSIPIQFNLSQVSEFPWKEWAARLEQDQGLLHSLHKQLHEA
EVIFQHEQGNLELIEHDLSGMSGMTWWKKFSKSVQSWSHTSAGTAATNFMLHPFIILLCVCLICIFMQVCLICKTKSMYR
NLRRSLEQGELILREMIIRKN
>ERV-2_AMi_gag#LTR/ERV1 605-2086 via tfasty with SNRV_gag, 3 stopcodons. [Crocodylidae]
MTAEALQAAVVQKATAEEKDALKSECKRLESELQQCKENLAEAGRNASSYKGCxRAEWVRGRPPALSRGDLxPSGSVAGE
VGSCGGCHSWLRQPGNWDENIWLDPDSLDPSGGRDLPEDAKALSPYVPLRQELHDVKEKVEQCPMAPVVTQQIIKMEQAP
AAGGVGDGNVLDQQQCRVEQTVTVTAPLAPEQVRAAAMNLGPLNKDTAIQWVAECLHQTGWTVPDCQAVAQANCNSEDWS
VIKAALDDGQPVEDDLYRWTRRILTALLGARIVSRLYFMEVQKPGESPEAYIRRKQLLGCASGLIPQLGNGDYNFDDLGF
KTTLIEGLAALVKVILGPVDDAMQWPELRTRIQKAGIIYRESSPKKEVRNKGDRGEPIQAVTFSNNGPPFWKFGTPQHKM
GFRERGASRGxGPGGRMEYGICREGQNEEGRDSLWTEVWKKLMSMGEDRDKWNGAPTNALMKRLVELIQTEELVEGAEPD
PHRSVQPSAPPDPQ
>ERV39_MD_p2#LTR/ERV1 2004-2779 May be part of gag [Didelphinae]
SQIIATISTRRGKQWETLGGTSKRKHENITKEWRKGDGKEREKNSMVGGLYMKQSMGNNISAKQRSIIEMQEEMRNSIAE
IKHDIFDSQGGIQNCIDKSKEQIRSYLENFLACRMVLGITKSNKDNKSLKQQHNIIHTEKKQHHNSPDHSDKAAEMNTVA
SKLKAEYTNPTIKIPKELKVVTQEKVDTFKLKAERGKSNEKKAGLNTNAKEFYPRGHIKNLIPLNDNRTGEGFSTCQYQI
IDMLPPEPDASKQSKERG
>ERV-2_AMi_pol#LTR/ERV1 2207-5755 via tfasty with ERV1-4_XT_pol, 1 stopcodon. [Crocodylidae]
MLIDTGASISILQQRWVPDGVLMDPNHLQLQSYTGELEDSPVTQPIVTQIGEWKFQEKYGIQKDKPGGDSENGILGMTAL
QQGGILLDLANGCLWKWPVEEKSVLISAVHRCAAIKAPAVTDxVDQDEWMQAFPKVWAKDKLECGKIQACVLIKGPDPPP
QRQYKYPSEAEVGLQPTINSLLSQEVIVQMPSVCNFLIWPVLKADGKTWRLTIDFRALNAVTPVTAPVVAKYPEILAAIA
GGAKWFSVLDLANAFFAIPLAQECWYKFGFTFRGQQYCFTRVPQGFHNAPAICHAHVVRMWDKLSPDSQSCVLSYVDDIL
IHGGDKEQVAKVTREVLQVIEETGFKVNRAKAQLVVKEVKYLGVTLGQDGRTPDRQRVELIGKLPAPTDLSSLQALLGTL
NFSQDFIPMFAEKSQPLVKLLKKGRQWEWGPEQQAALIQLKRDLVQAPALAYPDETKPFALQLATTKRAIGATLLQGKGK
EQRPVAYASRTLAGPEQNFNPCEKECLALIWALRKWEYIVGGARVIVQTAHSPLKYIISGKIKEGHVSSPRLAQWTLALM
NRDVDFERQQKIPTVSYGLVVQGEEHECPLPEYQRLEWSVQTGLTLEKAESEDWSIWFVDGSSYYIEGKPYTGCAGIRVQ
DEEVFQQQVTPHSAQAAEVQAVKAVLEVEPLGKNVAIFTDSDWTCRALTTWLPIWAKNQMYMGEGKLVAHSALWEQVYQL
IVNRSGKTAVQHVRGHQKTKSKEGFWNNWADALAKEAARKGKQCQQVAVLTRQAQRKSDAVSLGDLKQLQENDKDLKSLL
GRDEVIQLEGVIWRIDPATQARQWVVPQEVRNELIQFVHEKGHLGWKKTMEIVSQTGWWPSVKQDVKQWVDNCLPCAMVN
ADSSKRKVQLRHQRINGPWSRIQVDYIGPLPTTKNGNGYCLVVIDPFSKWIEAIPTRRNTANITAKQLFNIVFSRWGVPK
EIDLDQGPHFVAEVMKELCSTLGIKQRFHIAGHPQSSGQVERTNRTLKESLAKMVKCDGKDWDEKLPVILMALRAAPAAH
GFAPFSVMTGRQMQLPQQWWINTDLPDDLVPRVVTDQWVQALIQHINDIHVRVAQELGLNVKRMDKRFGPNKDLTEWNIG
DQVMYRKWEDKEHGLDVKWKGPAYVVDKASPTVYLVELPGKMRGDSLWRKWFHISQLKPWKGK
>FeLV_env#LTR/ERV1 gi|74706|pir||VCMVFP env polyprotein precursor (clone CFE-6) - [Feline leukemia virus]
MEGPTHPKPSKDKTFSWDLIILVGVLLRLDAGMANPSPHQVYNITWTITNLVTGIKANATSMLGTLTDTFPTIYFDLCDI
IGNTWNPSDQEPFPGYGCDQPMRRWQQRNTAFYVCPGHANRKQCGGPQDGFCAVWGCETTGETYWKPTSSWDYITVKKGV
TQGIYQCNGGGWCGPCYDKAVHSSTTGASEGGRCNPLILQFTQKGRQTSWDGPKSWGLRLYRSGYDPIALFSVSRQVMTI
TPPQAMGPNPVLPDQKPPSRQSQIESRVIPHHPQGNGGTPGITLVNASIAPLSTPVTPASPKRIGTGNRLINLVQGTYLT
LNVTNPNKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSVPQHKLTISEVSGQGLCIATVPKTHQALCNKTQKGH
RGTHYLVAPNGTYWACNTGLTPCISMAVLNWTSDFCVLTELWPRITYHEPEYIYSHFENKPRFKRDPISLTVALMLGGIT
VGGMARNRNRDCGLLETAQFRQLQMAMHTDIQALEESISALEKSLTSLSEVVLQNRRGLDILFLQEGGLCTALKEECCFY
ADHTGLVRDNMAKLRERLKQRQQLFDSQQDGLEGWFNKSPWFTTLISSIMGPLMILLLILLFGPCILNRLVQFVKDRISV
VQTLVLTQQYQRLGQWRLRPTVSPQLNV
>ERV-3_AMi-I_2p#LTR/ERV1 2151..5717[Crocodylidae]
RGPRGGTPEQSPGSWEKLGTLNWDPGGRPRIPVTVGTQGHTSALLDTGAALNVFGRKWDLKQFETDRITLRSFTGQETAG
VVCKGVTACIQFPEGPQEINIDGVQQEGSTEQLILGAPLFNREGWILDLANGVVWRAQTADPWEPCETNPYWRWERCKGV
GAIDFDSGDEWVQQFPNVWARSKSDCGRINACVKIIGDPVPPQKQYSFPKQAEEAIQLIIADLLQQGVLIETNSEFNSPI
WPVLKADRVSWRLTVDYRAINKGTRPMAPIVANMPAMLSRVQESPRWFSVIDLANCFFAIPLHPESWNRFAFTFKGKQYT
FTRVPQGFHNAPAIAHHHVVSMLQSLAGPDQERVVSYVDDILVWGDQEREVKERTGRVLALIQKTGFRVSRPKAQLVMQE
VTYLGVRLGVEGKKIDSQKVTALLNMPVPKDPHSLRVLLGGFNFLRSHIYQFAEITQPLWRLLKKKVQWEWGDSEQKAFC
LLKEALIAAPALAYPNPLKPFYIKLATNEIALSAVLLQKNSDSKLVPIAYESRKLTGPEINFNQCERECLAAVWAVQKFE
GLTEMAPVIIQTHHSPLKYILSGNLTGSKVSNTRIAQWALFLTGRGVGHETQSKVDMLPYALLIEGTAHQCPGIEPCQGN
TGVTEAPPLEENPAVEDQPTHVWFTDGSSSFENGKRFTGYGAVNLNNDQIGGPLPPGYSAQAAEVRAMRELLEQHNPPEG
KLWIYTDSDFCAKALLHWVYNWNKANWHAADGKEIAQKADWQAIWEWIQRHPSSLRIRHVKGHQKADTLEAKMNQLADAA
AKKGARGDISAMQTRSSSHQNWKIQEEYAVHQGTGEVRWVPPPXCREEIISACHSLRHEAPEATTARVQEIAYWPGMSKD
VKEWVQNCLRCAGEGAKPKDPGLLHQKIVGPWQWIQMDYIDKLPRTARGNQYLLVIIDSFSGWVEAFPMRTHTAEATAKK
LWTEVICRFGAPKIIDSDRGPHFTGAVVKQLLQALGIRQQWHIPHHPQASGQVERMNRTIKESLRKVVNQTGTDWDLKLP
LILAALRSGNRLGTSLQPYQILFGKRMALIPTGLIPYPDSLDNPQPTEIIEWVKELPYRLRQQELQINEAIQQARLRMDK
QLEQLPRLWEIGQSVMYLRLTPKAHVLESKWVGPFTIINRLSPTVVQIDKGESGKWVHVSQLKLFKGAE
>ERV24_Prim_gag#LTR/ERV1 899-2224 [Primates]
MGNRTSKTESSSLRRDPPLETPAGFVFNTYGAFSCKYLEKWSHITHDDPKLQWPKWGTFEIPKLVYLRAQLEKAGSKIKQ
NNWESYFQWYLEASKRGSDKVISLQEENKRLSKTISELKKTAEISPPSSAPPSLLSELPCLDLPPLPPPPPSSAVPAPFR
EHPVSGRGEPALVYQPRSKVELKGIIKEFPDPLQDPIGFAREFELNIRTYDPGFSDLYQLVHMLVSESKAKDWIAKANWR
NPLEDFHKFSEADCEWARDTAKALLDAIPLVFQRVVDWNKIQQCRQNLDEPVMSYYERFEKXFKQYSGLSEESYANHQND
TLLNSNFINGLDEELAIIIKRQRPSWATSQTHDLVNFADQMSCTLTKEEKERKVKQKGKANKIMSLRLKQLSNQFVTPKQ
PNKFQNRPNPPLCNYCKKPGHFKKDCRKLKWKEQQQAKEKEE
>ERV1X2_ML_env#LTR/ERV1 5469-7547 [Myotis lucifugus]
MGWTLPGGAEHSNRHQSCRKKTLDPSYTGEEGERQHREMAGPEDRRPIEGQTHSVFILTLLICVQPGMGNPHSAKNYSWE
VTRTIDGTVIGSVVGIGTPVIRTDLYKLFGRNWGNSHSQSMSTRYGWGDQPWATGGKSYGCGTLSLEQGLWHTEHYVCPR
EGGSDCGGEDDFYCASWGCETLALWKKPPTDKLLRLTREIRPGAPRKNCIVGDCNPVILMPLAWWTDQWEGGKTWGLRLY
VSGRDPGQLFTIQRRALPRWLNPIGPLLPPDKQKRPSLPQHPAPAKPPGSLESQKPGNPGPAPPTEQLLGAGTGRPNQQL
LGTLDLMFSFLNRTSPNLTADCWLCLNPEPPYYVGIGAEAKLGRDASAIRNLSVESLPDELCMWGHKQPGLTLGDILNPG
TCVYPRNYPLSSSMYEDLCNSSIILPENYTGETPTYLVAPEGTWWACTTGITPCIFSPALQHPTNPELCILTHILPQVYY
YSGEGGREHLNLEPKRVKRAPVLVPLLMGIGIAGSTAVGTAALATGHQNYKELSKQIDKDLSTLENTVSQLEDSLSSLAE
VVLQNRRGLDLLFLKQGGLCLALGETCCFYTNHSGVIRESLSQLRKRLADREEARRAEGNWYKNLFSWSPWLTTLLSALA
GPVIILLLGLIFGPCIARCLLNFIQNRIQAVKLTVLHTQYTRISEEGAESKI
>ERV1-6_XT_pol#LTR/ERV1 1956-5360  [Xenopus (silurana) tropicalis]
MFADVPLTIPGYLQTKVDFWFCEGADNILGTDVMQKRGWIVDLGNKAIWKDARGKKPVVIDPSEYGHLKTVCSTEITVKE
FQWPDTGDNQVLTELVHKFPNLWAQSKNECGLMEGVRVNIQGTDPPPQRQYRLPPEAIEPIGQIIQDLEKIGVITETTSK
CNNPIWPVKKPDGSWRLTIDLRMLNKHTPPLTQLVAEMPDTMSKISATANWYSTLDIKNGYFSVELDEGCTYKTAFTFRH
KQFAFRRLIQGWSLSPTLFNNALAEKLATFSRQECLLQYVDDILLQTVDKQEHLILLEELFTILSNAGLKLHTTKVKLLQ
PEVQFLGIQIGPGYRKPLQERSKAIATLPVPTSHKALRQFLGLLNFSREFIESFAEKAKPLYELLQGNQSTFGDWGLEHQ
EAFETLKRDLQMAPALATVDPAAPFALQVHTSDVSISAVVLQLQGENWRPVGYFSRLLTPVERGFEVCVRHLLGVHFAVN
ASEHLVGFKEICLQTPHTPLKLLLERNIPGVSNQRFAQWLIALSGRQIKVDHKAKYILSQLMQYEGEIHECLVDAEETLP
ILFRREASTTDEAVFVDGSRFFADGNYYTGYSIWYPDRNLAIKHKLPGYFSAQRAELEAVKTVLERDLSEGKHPLVIYSD
SSYVVRSLTDHLAVWQRRGFVDASNKTLTQKETLETTFKLAMEAPRLYAIVKVPAHKKGEDPLIVGNTIADSLAKEAALN
GEEVMPKTPLTVSPVKKADTRFPSFEEEQAKDPSLNPQVDLTFPFIRENGMLFHDLNGKLRPVVPKHLQIPFTKYNHESL
GHIGQKKLLEVLEEKFYWETMKDTVEKVVTSCLICAQTNPRPKGQRPPLQRVPPADGPWSTLQIDFIGPLPSGKYGLKYA
LVIVDVFSKWVEAIPLRRDDAQSAAKALWEHVFSRWGFPQILESDRGTHFTGQVMQATCALLGVAQRFHLPYRPQSSAVA
ERSNRTLKSRLTKMLLDRGNTWVDALPAVLLSVRGTTSSTTKYTPFELMTGRQIPLVFPNEPFLSTPQRDAIAKSEWLKL
LQENLATILPHAASNMQKITPPEFTKFQKGGMVMVKTLRKAGPWSSGWEGPYTIINKLGPVTLQVQRPSDSVQNRRRQQT
FWVHADQCKLYVPKE
>ERV13_MD_gag#LTR/ERV1 474-1841 via tfasty with MdoERV2_gag, 1 stopcodon.  [Monodelphis]
MLKVNYLETKLDRMQTQYEELLKAKGTMAEXKEHEATKLEGATKSDKPTKLEMETEALESKPAHMFPLREVPIVSPEHGI
VNLMCHKKFTQADIDSFKKNTPSYEEEPMGVVKQFKHLIKLYNPSYLDFDILMDELLTKREKQQIIQDTNNNPRIANWPT
EDPGWEVNSFAGYRDLTTAREAIIETMRQNSRYPGTWSKFECLKQEVGETPSTFLDRIIDCAEKWIGLDILTDENVNHIH
RQFVKNACPVVRNYFWSNCPNWFDMGLDEIRIANYVFQDEKDRQSEEKNDIIDNLTKEIRELKQKLKSNEVQEKTVAALR
TYRQPRNNYNPRQYRQTPRCFLCNRPGHLMRECRFRGQFFGQSFRGNxGNRFNHFNGFRQNGYRNYGFNNGFNNAFQYGR
PNYPNYFDTGCYHNSQQAADLNTMQEYIKAGARPKYSQVAGGNPQKLDMQKGATSL
>ERV16_MD_pol#LTR/ERV1 2457-6027 via tfasty with ERV34_MD_pol, 1 frameshift [Didelphinae]
LPESWVTAKVEGKLVKFLVDTGADKSVLRNPLGDVSSWASWVQGATGTRRYNWTMKRSINLGSHLVSHSFLVIPESPAPL
LGRDLLHKIGAHIHFTDSAVSVTDNTGAPLQVLTLTLPEEYRLYEPLYSQPPASIHKDVQLWVDRVPGVWAELSGVGLAK
KDPPVIVTLKPGATPIRIKQYPMTLEARRGITPQINRLLGLGILVPCHSPWNTPLLPIRKPGGVEYRPVQDLREVNARVE
DIHPTVPNPYTLLSSLSPDLTWYTALDLKDAFFTLPLAPSSQPIFAFEWFNESTQTSGKLTWTRLPQGFKNSPTLFSEAL
AQDLQDFRTTHPEVTLLQYVDDLLLAARTSDDCEQATLALLKTLDHLGYRVSAKKASLVQREVKFLGYKLKGGHRWLTQA
MKDTILQIPCPSTARQLREFLGSVGYCRLWIPSFAEIAQPLYNLTRESPDWEWTPQAEEAFQHLRRAMLEAPALTLPNPE
KPFQLFIEEKHGVAKGVLTQRLGPWNRPVAYLSKCLDPVAAGWPPCLRTVAAAALLTKDADKLTYGQSLILSTTHAIEGV
LKQPPSRWFSHARLAHYQSLLLDTSRISFRVISSLNPATLLPNPSPTNPAPIHDCGEVLAEAITARPGLQDEPLPNSDLI
LFTDGSSFLENGHRLAGAAIVNAAGETVWAAALPKGTSAQKAELVALTQALRKAEGKRATVYTDSRYAFATLHVHAPIYR
ERGFVTSGGAPVHNLPEIQDLLSAVWEPKAVAMVHTPGHQKGDSLEAQGNRLADWAAKQAARGQVTILTTTTIPPPPDGE
PQYTEEDLTWIKSHLGQAEGAWYRDPEGNLLLPEALGQLLTTHLHHLSHLGDRKLAQLLDKGKLKYRGRSRFLCRLVDSC
TACQLLRAAKPDKHIGQRIRGQRPCQHWEIDFTEIKPGKFGFKYLLVLVDTFSGWPEAFPTKTETALIVAKKLLEEIIPR
YGLPETIASDNGPAFVSKITQGVAAALGTNWKLHCEYNPQSSGQVERMNRTIKETLTKLVLETGIDWVTLLPLALFQARN
TPGPSSLTPYEILYGSLPPILPTLPNPKGRNIPPELRPMLLSLAHFQKDLWPRVRDLFQPAPYDPHPYQPGDWVWVKRHQ
KGSLQPRWKGPFVTLFVTPSALKVDGIGPWVHHSHIRKAEPLDLNSLNVWVAHKHPTDPLKIKLTHHPSP
>ERV13_MD_pol#LTR/ERV1 1905-5629 via tfasty with MdoERV3_pol, 1 frameshift and 3 stopcodons.  [Monodelphis]
MGNEIKTNENDKEILKTWZISTGEINEELENEEQEQVLSFPDPSVLAPVIPVHSPENSTEPHVTLKIGTQVYDCLLDTGA
AKSVLQKSPEECKAVGSIEVVGVTGKPQKVKKLEPRMVSLGPLSVEHSFLLMPNSPMNLVGRDLLCKLRATIVCTPTGDI
SLKLPEESLNLFPVLFLDTVESEGEGNNIYQIPDDIPKGLWATDSTDVGLLKSATPVKVLTKGGPPPCIPQYPLSKEAID
GITPIINSLLQQGIIIPCISEYNTPILPVKKPKLDAEGxIVYRFIQDLRAVNDHVVKSYPVVPSPATIISSIPSHAKYFT
VVDLCSAFFSIPIHEDSQKIFAFTWQGNQYSWSHLPQGFCESPSLFSQILNKDLKNIQFKDSKLIHFVDDLLLASPSAKV
CLCDSKHLLCELYKRGHKISKTKLQWCLPHVEYLGFVLSEGSRSISQKRVADIQKLSAPKTKRQLRAILGTTGFCRQWIP
NYGELTKPLTALTKDTEKDPLKLKPEHLQAIAKLKEAILSAPALGIPNYSKPFSLYVHERKGIASGVLTQSLGPNQCPIA
YYSGQLDPIAAGIAPCLRGVAATALLVTKSADLVLGCPLTVYCSHEVEALLxKFRMQAFSDQCLAKYDIVLLGNEHITLK
RCNTLNPATLLPDLPTQGEPLHNCETVVQLIERPQENLSDTPLDNPDLILFTDGSSYMQNGIRFTGAVVVSEFETLWFAS
LPRNLSAQGAELITLKHACELARDKRANIYTDSKYAFGICHAVGSLWLQRGFLTSSGKRIAHAEIIxELLSSLQLPKELA
VIHCKGHSLGQDLVARGNHRADMAAQYAAQQNAPACIMNLSVIDTTDLEKAYNDKEVQKWEQNFGARKENGIWIASVGKP
ILPKAFYSYICQAIHKKGHFGTQALIDTVKRTWLAPGISTVANKICSACSVCAQFNQSIFKQKAFGGRPLAHTPFEHLQI
DYINMPKSGQFKFCLVIVDQLTRWPEAFPSSKNTSSFVAKILLKEIIPRYGIPLRVDSDKGSHFTDSVLKQVYENLGIMP
KFHVPYHPQSSGQVERLNREIKTMVGKLCMETHLKWPEILPLALFYLRTRPRGDVHISPYEMLFGHSPLQAKSFKTAYVS
MLGGDLALAEYITELQNRVRELQEMGILTQGGPLDYALHLIKPGDSVYIKNFNRTSATQPLWVGPFHVILTTPSSAICVL
EKETWLHCSHVKKAATAEEEITSDNMAAVKKISEEEIIQEEE
>TA1-2#LTR/Copia 57-4111 Wised via estwise with ATCopia10 protein [Arabidopsis]
TFLKASFQIFNENSDFSLWKTRMKAHLGLAGLKGIIDDFDLTVTVLIPKSEGKKIEDGDEQGDSSQTKIVPDQVKIEKSE
NAMNIIIAHVGDAVLRKIXYCKSAAEMWETLNKQYMETSLPNRIYVQLKFYSFKMNDSKSINENVNEFLKIVAELSSLEI
NVVEEVRAILFLNGLSSRYSQLKHTLKYGNKALSLQDVISSARSLERELDEQKETDKNTSTVLYTNERGRPQTRNQNQNK
EGQGRGISKSNSNAKLTCWYCKKEGHVKKDCFARKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWVLDSGCTSHM
SARKDWFCNFRKDGGTTILLGDDHSVKSQGQGSIKIDTHGGTITVLENVKYVPELRRNLISTGTLDKRGYKHEGGDGKVR
YFKNQKTALRGEIVNGLYILDGNTILSETCVAEGSKGKTELWHSRLGHMGLNNMKVLAGKGLVSKEEIRELDFCENCVMG
KAKKVSFNMGKHNSEYVLSYVHADLWGSTNVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCERKELVENQQNK
KVKCLRTDNGLEFCNLKFDAYCKDHGIERHMTCTYTPQQNGVADRMNRTIMEKVRCMLNESGLGEEFWAEAAATAAYLIS
RSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPSGTKGYKIWLLEEQKCVISRNVLFH
EELVYKDTIEKERVVESEAEPASHSKSTLIKMKTPGNLNSGGVIQVSDEEESDESVDEEQEPEPQVELPETQTTSSLANY
QLVRDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEKNSLIKNGTWVLVDKPKDRK
IIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAPVAKHTSIRILMSVVVDQDLELEQMDVKTTFLHGEL
EEELYMEQPDGFISEDGENKVCLLKKSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHDACVYVKQAGEQDHLYLLLYVDDM
LIAGKSKSEINKVEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYIHNVVQRFNMAEAKVTRSPIGAHFKLAA
VRDDDECIDNNDVPYASAVGSIMYAMIGTRPDLAYVICLVSRYMARPGNIHWEAVKXILRYMRGSQDLNLVFTKEKEFRI
TRYCDSDYAADLDRRRSVSGYVFIVGGNTVSWKANLQSVTALSTTEAEFMALTEVAKEALWIKGLMKDLGLEQDKVTLWC
DSQSAICLSKNSTHHERTKHIDVRYNFIRDVVEAGDVDVLXIHTSRNPADALTKSIPVNKFQSALELLKLVK
>SZ-37_gagpol#LTR/Copia 54-5221 via tfasty with Copia-37_ZM_gagpol, 2 frameshifts and 6 stopcodons. [Oryza sativa]
MSNEVNHVGKAPMFNGTNYTTWKIKMSTHLKAMSFHIWSIVDVGFAITGTPLTEIDHRNLxLNAQAMNALFNSLIQExFD
RVSNLETAYEIWNKLVEIHEGTSEYKDAKLHFLKIQYETFSMLPQSVNDMYGRLNVIVDDLKGLGANYTDLEVAQKMLRA
LPEKYETLVTMLINSDMSRMTPASLLGKINTNDMYKLKKKEMEETSPSKKCIARQAEVEDKGNGKVNEANENLEEEIALL
ARRFNDLLGRRKERGRGSNSNRRRNRRPNKTLSNLRCFECGEKGHFALKCPSKDDDGDKSSKKKSGGYKLMKKLKKxGKK
IEAFIGEWDSNEESSASSGSEEEDGDDTSSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDVSYDEL
VSMFEELYAYSEKEIVKFKALKKDHASLEVLYEELKTSHERLTISHEKLKEAQDNLISTTQHGALIDVGISCDLLGDSAT
CHIAHVASSSISTSCDDLVDMSSSSSTSCVSICDASLVVENNELKEQVAKLNKSLERCFKDKNTLDKILSEQRCILNKEG
LGFIPKKGKKPSHCATRFVKSNGKYCSKCREVGHLVNDCPCGKPPKTCMFDSHYMLRKAHDGSIVARYVGSPILGGKKNA
IWVPKALVSNLQGPKQVWVPKRAxSSFVGEYRTGGSHWVFDSGCTQHMTGDRAMFTTFEVGGNKQEKVTFGDNSKGKVIG
LGKIAISNDLSIDNVSLVKSLNFNLLSVARICDLGLSCAFLPQEVIVSSLLDKSCVFKGFRYGNLYLVDFNSSEANLKTC
LVAKTSLGWLWHRRLAHVGMNQLSKLSKRDLVVDLKDVKFEKDKLCSACQAGKQVACSHPTQSIMSTSRPLELLHMDLFG
PTTYKSIGGNSHCLVIVDDYSRYTWVFFLHDKSIVAELFKKFAKRAQNEFSCTLVKIRSDNGSEFKNTNIEDYCDDLGIK
HELSATYSPQQNGVVERKNRILIEMARTMLDEYSVSDSFWAEAINTACHTTNRLYLHRLLKKTSYELIVGRKPNVAYFxV
FGCKCYIYRKGVRLTKFENRCDEGFLLGYASNSKAYQVYNKNKGIVEETADVQFDETNGSQEGHENLDDVGDEGLMRAMK
NMSIGDVKPIEVEDKPSTSTQDKSSTSATPSQAQVEVEEEKAQDPPIPPRIHTALSKDHPIDQVLGDISKGVQTRSRVAS
ICEHYSFVSCLEPKHVDEALCDLDWMNAMHEELNNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENGLVVRNKARLVAQ
GFTQVEGLDFGETFAPVARLKAILILLAFASCFDIKLFQMDVKSAFLNGEIAELVFVEQPPSFxDPKNPNHVYKLSKALY
GLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFDMSMIGELS
FFLGLQIKQLQDGTFVSQTKYIKDLLKRFGLEDAKPIKTHMATNGHLDLDEGGKPVDLKLYRSMIVSLLYLTASRPDIMF
SVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYAGCKVDRKSTSCSFQMLGRSLVSWSSK
KQNSVALSTAEAEYVSAGSCCAQLLWMKQILLDYGISFTKTPLLCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKC
DIVISHIRTKDQLADIFTKPLDETRFCKLRNELIVIDFSNVA
>TDH5#LTR/Copia 5-4435 [Debaryomyces hansenii]
MSHFLDFDVTEQDKLRGIDNYKLWAAMVKSRLLDLDCHLDLYLSNVDIPGVSEFTDTERNVIRLKFDLILDKLLKKCITS
AVYATYCTKRGLRGLNLWHALFRDFGTISVKQHLELHSTLTRQLFDSTVSLAAKIQLLEDADLDLLPLDEGQRILFFHSC
VNNSTVKNVIIRLDEYVPSRLNWLALKDGISEILHETSSPVSDESSMALVVLQRNPRRIMIKSKLTCFKCGGIGHKLNVC
PSRSDDEYWNLQPPKPTNKPNYFVTYTEEKPSVSPTNAVCGLSYLVPKPSQHTAAYADTGHQTSSASVSHGCAAATDSHS
DVFLLDTGASVHITHQKDLLHDFNPDNSGTIAGLDPATTFKILGTGTLKFTLPDGSILPVEDVQYVPSCGRNLISVSRAS
KGGSTFHLLPDGIVDLRLGLQVAALTKDDLYQFSLPCLPAHNVSAGTAFTATMDAHSRLGHPSRKVAQRIGTLCPSYAAA
LKSESKDSLCESCIRAKATHALPKTSTTSGRTVKTPLELVHSDVCGPFSQPSLTQDLYYVVFVDDYTHYMAVYPVKQKSD
VYECARSYFLQSERFFHNRGGYKPVTFRTDNGGEYMSSQLQQFLKAQGITHQTTVAYNSHQNGVSERAIRTINEKCRAMM
FHASTPLCFWAEAVACATYLLNRLPSTAIDKQYPYQRWYKSHAQWDHLRPFGCMAYALIPQQLRSSKLSPRSIRGVMLGY
AQTQHAYRIFDLDSGKVAVSNNVKFDEFVFPFQTMTNIPRDIASIGSLSSSLSSFSSIPGIRATAELPGTLMSPPVLDVD
MSDIESDFSSHDSMVPQDLASPVDGPSMDIVGPPSRGSLSSSPGITTTPRVVEPLSPLVTQEVSRPRIEYISDSEASVPG
EDYATSFYERHHDNFDKSDDEDYVDEPVRRRRAITMPDRLRRRSEVSSDGETEPSKKLKYETLHTESDSSLVVRGSGYFM
SHAYVVSTKKDGVPVTYKQAMLSDEAEKWKIAMDSEMSAHYSNNTWDLVLLPKDRKAIGNRWVFTKKDDGRYKARLVAQG
FSQVPGEDYLDTFSPVIRYESVKLLLAFSAVDNRVVHQMDVDTAFLNGTVEETLYMKQPVGFINENEPEKVCKLNKSLYG
LKQAPICWNTTISDFLAEHRFNRIDTELGIYVRGNIIIGLYVDDILISGKDMKEIEDVKKMLALKFKMKDLGVAKKFLGI
NIAQDTNGIKICLYDYIGKVLQDFEMTDANTVTTPTLAGEDLHKDNTEECDATRYRSLVGKLLFASTTVRTDIAYAVGIL
SRHLAKPSEMHMKCAKHVLRYLKGTQDIGHHYTGDSSLDIYCDSDWASDKSDRKSITGYIVRYGGAPISWKSKKQTTVAM
STTEAEYLALGEATKEALWIIMLFDEMRVPLQLPISIHEDNNSCILLAEHPVFHLRTKHIDIRHHFIREHIIKKQIKLCQ
ISTHTQIADMLTKGLNKIKFQDLRSLAGMTRIRIKG
>TSU4_SB#LTR/Copia 147-5373 via tfasty with Ty4_gagpol, (1 frameshift) (merged ORFs seem likely as similarity continues right after frameshift, within first ORF) [Saccharomyces bayanus]
MYERFLNKLTTKKNKIANEAEEDDDISNLDQLIEVDEKIEKTNNIILRLQEKLELIEFNKDVKKLHKRNDSTGTYYLFDT
ITSKNNKYYPKDWIFKYKMNKIGDIPVFLNNFHQFIEKYEFDNVFDQQIQNIDPRENEILCKIIKEGFDESPDIMNINTV
DIFRIISELKKKYTRFFGRDRRLKAWEKVLVDTTCKNTELLINELQKLILMEKWILSKCCQDCPNLTHILEEAILGTLHE
SVRNPVKQRLHMYSISENEKTEEILINIVIETVMDLSPPDSHYTERNCKYCKSELHSSVNCRKKVNRNLGLLHPATQKVI
IHKAQTKKNTQRLAQNHSELLKRQKKKNKKGSNKTLVIIDTGSGVNITNNKNLLHEYEDNKEKVKFFGIGKDNSVPVKGS
GYIKIKSNTNDDYLLTHYVPEEKTTIISGYDLAKETDLVLNQNYSTLENKDMNIKTHVKDGIIHVRMDDLIDHPAYDYKI
NAIQPTSSKKIRLKPKIISLKDAHKRMGHTGVQQIENSIKHSHYEESIDLIKEPNEFWCETCKVSKATRRNHYAGSMNEH
SIDHEPGSSWCMDIFGPVSNSNLDTKRYMLIMVDNNTRYCITSTHFNKNAETILAQIKKNIQYVETQFDRKVREINSDQG
TEFTNDQIAKYFVSKGIHHIFSATQDHAANGRAERYIRTIVTDATTLLKHSNLRIKFWEYAVISATNVRNCLENKTTGQL
PLKAISSQPVKVRFMSFLPFGEQGIIWNHNHNKLKPSGLSAIILCKDPNSHGYKFFVPSIKKIVTSDNYTIPDYAVDPIL
RNTQNIYLDDQSRSDTFNEAENIDAVSRLYDSLEDYEDDHKQVTLLTDLFTTEELAQIEANSKYPSPSDNLEGNLDYVFS
NIEESDEDEYDHVTNMDVDSELQSKENITTESETNEINKPSNTDEDVYEENVYRIPTAIQENLVGSQKTININNEDNIAS
RMQKNISGNEINYKELSDDDSDCSLHDSTNDSVTITSKKDNLTDDKDLQSQQELFEKVSDPEVLPEHMKIEKDVESQNSD
NETSQGVQFQPESIVTSSSDNDTQNDDYSTDKESHHLPLVVNVMDNTDQTYDKPNKEKSKNNSDISISPKGNNEELVQLV
DSNKAEKQDATLESSAITDEPIEIENPAANKAGFLNKAFNSLNKKRKRPIENKTSFNDTAKRDNKRQRKNIIKLLPDNTE
TSSAPRIKTIYYNEAISRNADLKEKHAYKEAYRKELQNLKDMNVFDVDVKYNRSDVPSNLIIPTNTIFSKKRNGIYKARI
VCRGDIQTPDTYNVIGTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEDIYIPHPHDRRCVVKLNKALYGLKQ
SPKEWNDHLRRYLNSIGLKDNTYTPGLYQSKDKKLMIAVYVDDCVIAASDEQRLDDFINNLENTFELKITGTLIDDILDT
DILGMDLIYNKKLGTVDLTLKSFIEKMGEKYKKELDKVRKSSIPHTSVYKIDPKKGELKMTEKEYKNGVLKLQQLLGELN
YVRYKCRYDVEFAVKKVARLVNFPHEQVFYMIYKIIQYLVQHTNIGIHYDRDLNKDKKITTITDASVGTEYDAQSRIGVI
IWYGKNIFNVYSNKSTNKCVSSTEAELHAIYEGYADSETLKATLTELGEGKDKEITMITDSKPAIEGLNRSYLQPKQKFT
WIKTEIIKEKLKEKIIKLIKINGKDNIADLLTKPVSISDFDRFIKVLNNQITPQDILASTDY
>TORTL1_gagpol#LTR/Copia 872-6126 via tfasty with Copia1_OS, 1 frameshift and 2 stopcodons. [Solanum lycopersicum]
MAAPLNLEEGQSSHRPPRFNGHFYSWWKVRMHDYLMAEDSELWDIILDGLFVPMMEVKDGEKTITVPKPKQKYDDADRKK
IEKGFKGKTLMVCGIGPDEYNRVSACESAKEIWDCLLTTHEETEQVKESKIDMLTSRYENFKMKEGETIHDMFTKLSSIT
NELRSLGEPISMTKQVRKVLRILPKSWESKVDAITEAKDLKVLTMDALIGNLKTHEMNRNHDLSKREAKKDKSLMLKYKS
DEDSSDDDDMTYLISRFQKIVRKNKMHKRGTNGTRNAAQGDTCYKCEKSRHFIRECPLLKNENKEHQKHRGDKENRRDLV
PGNRDRKAAAGMVVKRALAAWGDSSSDSEDPDEPKDVSMVAVHEEETVFNEMFALMAHTENEEENNQVTLFDMKNDLDKY
SLKKLRTLAKVMLDSVIELTSERDTMIAELEILTENKGQFEDTMSRMVSLELKNSELKNQLCQITEEAENLNGKPNSLQA
EIQEKLKNSEKNLSLSLEKNNKFEQDVVKLKKELENSLKWTKSSKLLSNVTNQSNFNKKGLGSLSISPPYNPHSKYVFVS
DNLLCLHCGKNGHLKNECVSWRNSCERHSKYAQKQNVPNERPGLTEPVSTHKFSKKKSVPAPRSFVRKIQSLPYWTKYNL
ITPLSAYWELKLKWVPKLNKxFLVQVSERGSSQCWYMDSGCSKHMIGDVKNFLSLKTLQGGGVSFGDGKNGYILGVGKVG
RSLEDSIDNVYHVDGLKYSWLSVSQICDKGNEVKFTSEKCTVVSLTTNKVILTAHRRKNMYVANLEISHGDDLTCLSAQN
KNADLWHRRLGHVSLSLLNKLISKDLVRGLPKMKFAENKICEACVKGKQIRSSFKPKNQVTSSRTLELLHMDLCGPLKVQ
SRNGKKYILVIVDDYSRYTWTRFLRSKAETADELRGVLQNDSKAETADELVVFFKMIQTKLNQVVCSIRSDHGTEFENST
LDRFCMENGTSHNFSAPRTPQQNGVVERKNRNLVNIARTMIIESNLPQSFWAEAVNTACHVTNRCLIRAVLNKTPYELLN
NRKPMLNYLRAFGCRCFVLNNGKDDLGKFDPRSDEGVFVGYSSSSKAYRIFNKRTQCIEESIHVVFDENGSLKNDGSNDD
DDVLKMLRSKKIEGAETDADQQLNNDCDDQNHSPPEEDAEVEQDDGVPGTTQNSSQSTSDSPEDDVTPDEEDHDDLPNQS
AARSGWKHSSSHPLDNLISPLNSGIQTRSKTRNLVAFSTFISSIEPKNVKEALSDADxINSMQEELHQFERSKVWYLVPR
PKGRTIIGTRWVFRNKLDENGVITRNKSRLVVQGYNQEEGIDYDETFAPVARMEAIRILIAFAAFMGIKLYQMDVKSAFL
NEDLKEEVYVKQPPGFEDAELPNHVFRLNKALYGLKQAPRAWYERLSKFLLKNGFKRGKIDNTLFLLKREQELLIIQVYV
DDIISGTTSEHLCEEFSSLMGREFEMSMMGELTFFLGLQIKQSSNGTSICQEKYIKELLKKFNMFDSKPIDTSMGTNPKM
IVEKSDPLVNQAMYREIIGSLLYLTASRPDIVYSVGICARFQACPRDSHLKAAKRILRYLKKIGNLVLFYPAGDTFDLVG
FADADFAGYQVDRKSTSGMAHFLGSSLISWGTKKQNSVALSTAEAEYVAAAACCSQLLWIRQHLEDFGIHIKAFLLMCDN
TSAVSMGKNSFHHKRTKHIDVRHHFLRDHVEKGNIVLTYCPTEEQIADIFTKALSKDQFERNRLKLGMLISK
>SZ-37_env#LTR/Copia 6865-8289 via tfasty with COPIO_env, 1 stopcodon. [Oryza sativa]
MPPRTRHGRRAPTPDPVSEPEESSGEDYAQRDEEVEANVEGASEEESGDDDSGSGEYEDEESDDMHIDPSIQFVVNMRNP
SQYTILRHHDQFLRPRDTPDPRFHTAFQKSVYEQVYAGKAFAEHKWISWRDINETLEFEGLQDLFRTVGIDRIMTLKQDY
NEDLIRQFYATVWVAGDYSEMKWMSDTLxCSISRRQFRRLLNIRLDFGDDLHEEHTHNPLSIDYLSQFYEDGARYTYGKV
AGLRTIPSVVNKIVRATILPRLGNNDDIRGVAWHVIDAIIQGRQFDIVTLMLQEIAISKGTFTQGIYYAPYIMRLIQDKL
GAARQNLKKHKQYKPRLQLGAPCAPRVAPSSHPGASSSSAPPPPHGYDPNAFFHPQYAYFGMQPNEYFNPVLGAINTLSE
SIQRLFTGHEALHEDVRGLRTDVGDLNASVGRLHTRVGILDSRVQMLESSQASHRRRRDASHPSTSACPPSPPQE
>SC-9#LTR/Copia 157-4322 Wised via estwise with SC-8 protein [Oryza sativa]
MMEDQGVWEVIEPAARAAVDPQKDKKAESHLLQSLPEDLLMQVAXNDXAKEVWDCLKTRFVGADRVRDARLQTLKGEFGA
MVMEPGETLDQYVGRITTMSVRHSALGSTLSDAAMVKKLFDTVPEKFVSLVTGIEQFYNVDDMPFEEAAGRLKAYEERVR
KKKAAAGGVTTDGQVLLTQAEWEARFKKDVGESSSPQKGKASGEGAKGGQSGRGRGRGRGAGGRGGAARGNSASGSGSGG
RDKSHIKCFNCEEYGHYSNQCPHPKKKKGEAHFAQIEDAGAALLLAVTENAPVQATQEMFVHEDRVWPKLLLADGGAVAG
NVWYXDNGASNHMTGDRKKFRELDESITGSIRFGDASSVQIKGKGSVLFSCKNGDQWLLQDVYYIPSLCCNMVSLGQLTE
TGHRVVMDEDVLEVFDKCPWRLVMKVRHTTNRLYRIELNLAHPVSLLSSLDDPAWLWHARLGHVNFQAMKLLVDKGMEVD
VPAIVHPNQLCQACLVAKQIRASFPVVANYRAEEPLELIHIDLCGPISPATMAGNKYFVLIIDDFTRWMWVFVIKSKDQA
VEAFTKFQTXAENVAGWRIKTLRSDRGGEFLSGEFAQVCESAGIQWHLTAPYSPQQNGVVERQNRSVMAMARSLLKGMSV
PGRLWGEAVRYAVYILNRLPTKAMGNRTPYEAWTGKKPHLAHLCVFGCTTHAKITTPHLKKLDDRSAPYVYLGVEEGSKA
HQLFDPRRGRIHVSRDVIFEENVVWQWLGDAGEQVSVEFDVEEIVEPPAGSATSLPGAIPRYQAPSPGNRPGKELVVVEE
EASSLAGTMEASPSLPTTPAMPIGEQSTPHSAGEIDTDGAPVRYRHIADIMRDAPRVDLVDDEQDGEAFLAEMEEPSAYR
EAAGHPAWEDAMAMEMDAIECNGTWELTTLPAGHRAIGLKWVYKLKKNTAGEVIKHKARLVAKGYVXRQEVDFDEVFAPV
ARLDTARVVLALAADRRWQVHHLDVKSAFLNGELEEEVYVAQPEGFVKQGREHLVLRLNKALYELRQAPXAWNIRLDRCP
KQLGFERCTQEQAVYTRGTGSGGVIVGVYVDNLIVTGENPVELKMFKEQMMGEFEMSDLGLLSFYLGIEVDQGENGTTLK
QTSYARKVLXSSGCXECNSTSIPIDPRMQLNKDADGHPVDATEYQRVIGCLRYLLHTRPDLSFAVGVASRFMERPTLMHF
KAVKQILRYLKGTIDCGLVYAARNGDMQITGYTDSDLAGNVDDRRSTGGMAFYINGSLVAWSSQKQKTVALSSCEAEFMA
ATAAACHALWLRALLVEIVGGPTKVVKLFVDNKSSIALMKNPVFHGRSKHIDTRYHFIRECFDGGQVVIEFVRTEEQRVD
ALTKGLPAAKLATARHLLGVRFLGPQHN
>RLG_scMaximus_4_1_gag#LTR/Copia 61-2136  [Saccharum hybrid cultivar]
MAQLSLHINNIKKAPHFDGTNYAYWKVKMTAHLKSINREVWKVTETKFEVANPEAPTPVEEKKLQCNDIAISALHEALDD
KTFEQVKNIEIAHDAWAKLEETFEGTEGTKTAKAYILQEKFSSFKMQDDESVPEMFYRLQVIVNEHKALGEEVKGNQFSM
KFLRSLPKRFDTLITVLVKTTLKDSTPQQIFQEVMTDDSYREDDEKDELVKKKKKENEKKDDEKKKSVAFKATTSKGKSK
IESSSDEDSSSCDSDDIDEKMALFVKQFGKFMKKKGFRARRRKNSYKKNEHTMRCFRCHSKDHLIAKCPYDSDDEDAIKK
ERKKQKKKQEKKESSHKRKNDSHVATWDSDDSSSDDEDDYKSKKKGHASIAIQKKVSLFDTPSCFMAKAAKVSSNDESDH
DNASDSDSDEEEFTKDELITMLEDCTQHFKESRKECKGLLKEKKNLMQELDELRASYESLKVDHKKLQKSHIKLEEAHSS
LVEKYKNIPTNVEKAKTCNIGISCDIIDETFYKPIIVAPTNPSCSSSTSSSSSSDGFTCDSTLIVENENLKKEVKELNHT
LAKAYGGEDRLLMCLGSQRASLYKEGLGYNPKKGKAAFAPHKTRFVKNNGSYCKSCKQVGHIEQHCMNKKSNANVSLIKF
NSFYMLTKGTNGVHAKFIGAPWMGSKKKAIWVPKSLVSNLGGPKQVWVPKKN
>SHACOP15_MT#LTR/Copia 172-4086  [Medicago truncatula]
MAAKFEIEKFNGRNFSLWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIW
DTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITN
NNITDTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVK
KECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVY
MGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLY
MLLGDTLQEADASVAASSQEETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLKFARVTTRSKH
ILDLIHSDVWESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEF
LAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKG
KPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDSTSK
ETAIVQMEEKSKESDSSEAESVHEEQEPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDA
SQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTT
IRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDY
SRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQK
NYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADP
GKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAE
YMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNL
ADVMTKPINADKFVWCRSSYGLLET
>SZ-17#LTR/Copia 6-3104 Fragment (N-terminal 600 AA missing) [Oryza sativa]
ASIEFDPFGLSVKDLETRNVIARCNSSGDLYPFYPPATSTHALLAAPTSLWHRRLGHLGREALSKLIRSSVISCTKDDLP
HLCHACQLGHHTRLPFSSSSSRASNNFDLIHCDLWTSPIVSVSGYKYYLVILDDCSHYIWTFPLRLKSDTFSTIANFFAH
VKTQFGTTIKSVQCDNGREFDNSPARTFFLSHGVAFRMSCPYTSQQNGRAERSLRTLNNILRSLLFQACLPPVYWVEALH
TATLLVNRIPTKTLSSSTPYFHLYSTQPTYDHLRVFGCACYPNMSSTAPHKLAPRSSLCVFLGYSSEHKGYRCLELGSNR
IITSRHVVFDESFFPFADMSTSPMASSALDIFLDDNELTAQPPRAKFVHAGTSSAARGAVEPSTPPPAPSSIGPRSPATL
AGPEAGPHGGSPAGAATSQPGAISPARTAAPSAATSTTRAVTSAPRAATSGTTPSLSPLAGTAAPPPRAEVAASSTAATG
RTLATRPVSIAPVDNAHSMRTRGKAGMAQPVDRLNLHAAPLSPVPRSVREALSDPNWRAAMQAEFDALLANDTWSLVPRP
RGVNLVTGKWIFRHKLHSDGSLDRYKARWVLRGFTQRPGVDYDETFSPVVKPATVRVVLSLALSQDWPIHQLDVKNAFLH
GTLSETVYCIQPTGFADPSHADLVCRLNKSLYGLKQAPRAWHHRFASHLISLGFIEAQSDSSLFIHRRGNDTVLLLLYVD
DIVLTASSASLLQQVIAALQREFAMTDMGPLHHFLGITVTRFASGLFLSQRQYSQDILERAGMGECKPCSTPVDVHSKLS
ADGPPVADSTQYRSLAGALQYLTFTRPDIAFAVQQVCLYMHDPREPHLAALKRILRYIQGTLSLGLTMRRSPPTDLVVYT
DADWAGCPDTRRSTSGYAVFLGDNLVSWSSKRQHTVSRSSAEAEYRAVANGVAEATWLRQLLMELHRPPRTATVVYCDNV
SAMYLSSNPVQHQRTKHVEIDLHFVREKVALGHVRVLHVPTTSQYADVFTKGLPTSLFQEFRTSLTISDAPD
>STONOR_ZM#LTR/Copia Fragment (N-terminal 350AA missing) 2-3229 [Zea mays]
WYQSQVEAAVEAIGDIHLKLVNGFVLLLRDVLYVPSLRRNLISVSRLDDQHIHCHFGDRQCVIQFDNKDVGLAIRRDMLY
LLSQSDVVNVLDIPENDPANSGRKRKRSDGETSSKLWHYRLGHISRGRIESLVKEQILHPLDFTDLEQCRDCIKGKFAKQ
IKKDAKHSTRVLEIIHTDICGPFPVRTVDGFNSFITFTDDYSRYGYIYPIKERSEALDKFKQFKAEVENQHDLKIKIVRS
DRGGEYYGRHTEYGQVPGPFARFLRENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMLSYSNLPLGLWMEALKTAMHI
LNRVPSKSVARTPYELWTGRKPTLNYFHIWGCPAEARIFNPGQGKLDERTTSCHFIGYPDRSKGYRFYCPDRQTKFIETR
HAIFLEDDMIKGSKVLREVDLQEKRIYVPFPMVEEPHFSIPTVVTPTVTPTVGETPAANVASSSATTTEQVASPSAHIGP
EPVAQDSSEDDDSVAPSDAPLQEPQVESEPEPSLRRSQRLRKSAIPDDYEVYAAENIECDEIHMSEDIDTEGDPTTYEAA
MRSANSSKWLSAMEDELESMRMNKVWDLEVIPHGAKTVGCKWVYKTKRDSRGNIERYKARLVAKGFTQREGIDYHETFSP
VSTKDSFRIIMALVAHFDLELHQMDVKTAFLNGELEENVFMAQPKGFVVSGKEHMGCHLRRSIYGLKQASRQWYIKFDQT
IRKFGFEENKEDNCIYAKFRKGKYIFLVLYVDDILLASSDKDLLAETKGFLSSNFDMKDMGEASYVLGIEIRRDRQKRVL
GLSQKSYIENVLKRYNMHKCNASPGPIVKGDKFGEYQCPKNQYEKNKMKSVPYASAIGSIMYAQVCTRPDLAFTTGMLGR
YQKNPGIEHWKAVKKALRYLQGTKGLMLTYRRSNSLQIVGYADADWGGCRDTLKSTSGYVFMLSGGAISWKSCKQTARAS
STMHAEFVATYEATGQAIWIKKFVPGLRVVDSIERPLRIYCDNEPAVFFSHNNKSSGSAKYIDIKCYIVKEKILDHTIQV
EHIRTHQMLADPLTKGLPPSVFSKHAAGMGLREYL
>TY2_pol#LTR/Copia 1233-5273  [Saccharomyces cerevisiae]
MTTNLVLGQQQKESKPTHTIDSNDELPDHLLIDSGASQTLVRSAHYLHHATPNSEINIVDAQKQDIPINAIGNLHFNFQN
GTKTSIKALHTPNIAYDLLSLSELANQNITACFTRNTLERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLTINNVNKSK
SVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYL
HTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHK
FFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGL
DITTILPFGQPVIVNNHNPDSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDNQSKLDQFNYDTLTFDD
DLNRLTAHNQSFIEQNETEQSYDQNTESDHDYQSEIEINSDPLVNDFSSQSMNPLQLDHEPVQKVRAPKEVDADISEYNI
LPSPVRSRTPHIINKESTEMGGTIESDTTSPRHSSTFTARNQKRPGSPNDMIDLTSQDRVNYGLENIKTTRLGGTEEPYI
QRNSDTNIKYRTTNSTPSIDDRSSNSESTTPIISIETKAVCDNTPSIDTDPPEYRSSDHATPNIMPDKSSKNVTADSILD
DLPLPDLTHKSPTDTSDVSKDIPHIHSRQTNSSLGGMDDSNVLTTTKSKKRSLEDNETEIEVSRDTWNNKNMRSLEPPRS
KKRINLIAAIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDRNDIDPKKVINSMFI
FNKKRDGTHKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLG
LNDKLLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRGWSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQ
YDTKIINLGERDNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEY
KEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAIS
DASYGNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELNKKPIIKGLLTDSRST
ISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNKWIH
>DIRS-5_NV_yr#LTR/DIRS 1348-2349 [Nematostella vectensis]
PSYLSIVRQQLTGLGFTERSVKIITSAWREGTTSQYQTHLKKWLQFCKERKCDVISPKLSFALDFLSMLHEQGLSYSSVN
TARSMLSSILQLDASSSVPFGQLPIVKTFMKGIFELKPALPRYVSTWDLSVVLDWFRKGEIVTSLTLKELTLKLTFLLIL
LSGQRCQTISLFSLENMKLSDSSCTFTVTEKIKQTRTGHHIAPIVFLAYPEDEKLCIMKYLKEYLLRTENLRNNCKQLLL
CHAKPHGPASTDTISRWCKAVLASAGVDVSQFKAHSTRAASTSFLANREVNIQDIMKSAGWSSDKTFQRFYHKPTERTFN
FGSAILSLGGQHK
>DIRS-3_SP_gag#LTR/DIRS 219-1682 [Strongylocentrotus purpuratus]
MDKSWDSKNNFEIPSSARCLPGTSKSPSEPAITGTGTNPQAAGTIMPTLPGASPPTSKAKPSSGIAVGTPKCKISSKAKP
SEQENTKSSKTKVKSSDNKYVGKAKPNREVDNTSKAKPRSDSKSKSVDSRIDKLEDMLSVLMERIPAPAQPALAPQTFSS
PVDKNTEPLSVGRLTSGEGLLADDFYDGSESPGSELLYDTDDVGSMGRAVGSVPTTAGKGQDSIPMIAAKFAMPSGIGAP
LHDDIAQSMTYLMSNKLEEKSLDEAAEKYLSPENCELLDTPRVNTIIWENLRSATRNKDLKIQYIQKSLTKGLCAFARSL
NPATMTEEQHDALALLCNANYGLNSMRKNLIKPDLNPLFHHLCRPTYPVTKHLFGEDLGRQVKELQEQQKATAGVMNTRN
QPQDRHQRSYHPYRKVTDYAKHTMKRAGWFPNRDQGNSSSRMYGNSERPFLGQRQNSNFKKGNSKQQASHTYTPTAANRG
KQSYHRKK
>Pioneer1#LTR/DIRS 388-1741 via tfasty with DIRS-1_CR_yr, 3 frameshifts. [Chlamydomonas reinhardtii]
MVGSFARLLPRRLPLLMLFCVSATGAASRVPGCGHELDPRPAAPPLPLPPVPLLSRVPALAALRQAGWAPRAPVPAAAAA
DREAVYQRGLVSAARTVEASLAASTYSRQEAAAREFAAWLARFGGGRTVLDCTPDDVLVYITEHWLPSHSGRQTEAPGPS
AIKSHLSLLSGALARAGRDGRYNAVTGEGNPCSSAWVEDYRKGYQRQQMLAGYQEVSAVPLSVQKYEALVRHLWGSIRVA
AGDSLAVLVHVRDLLCILFLWQTAQRAHDIGKLGLGDFVDPVRPDQPYQGFPLPAPWEHVCGVPSLCICERGTKTYRLAR
APAIWLEPQPAAPDFCIPRVLGLYMWLCASRRPAGSPIVDLLFRPLTPDQRSFKTPLRTSTLSARLKLHLQAAGLYAGES
CHSFRRGALQAAAGGGATSEELMGLSHIRTPAVLGRYLDEERHLRDSRSQL
>TnDirs1_gag#LTR/DIRS [Tetraodon nigroviridis]
SLTPLSYSMSTAITPAKGSDPKAKEAVSRPCPASCGATISGRDPHPLCIVCMGPKHAQSSLANSQTCPHCASMPEKMLER
RLRVAVANSQDPCLSTPAPQPDVHQARASTSWADMMDAESPVMPPLFDELAGGEQGDEDAEGDANSDFLDMVEMEEEEDD
STFPPRQSRPSSSAEVAPPADSDFYEVCKRAAAKLGIPWPASQGAEGLERDLYDGKRLPPTQPAPKQLLPAVPACVKEMG
RFWPSPFKSKLPTKGCSKLEVQGMKELGLAEPPAVEPSVAYHLHPNRRSVSACSNISLPSKSDRLTASTYQRMYKYAAQS
VCALNAVTLLSAYQAEILEEMGHQLDSQTPNPLLWDEICVVNDLLLRSSRGAAQGCGRVMGLAVSGERALWLTLSGLSDT
QKVEVMDAAYDPTKGLFGPALEKMRETSSRRKQEGEAFDLCLPRRAQSRPPQPPPAGFAAAAGRARQNSHRAPKHGPAQQ
TGPQTRTENPRQWGKHSFATVAARNKPSPHPGDGKKKRAT
>TcDirs1_pol#LTR/DIRS Tribolium.castaneum  from_retrobase [Tribolium castaneum]
FKLEESASPILPEPRQTQSIAEQTTTEDGERRPNATQSLLSASNVENRTSEEETLKVGSYCGRLKFFTDQWRQITSDPTI
LSWTQGYAIPFHQKPYQERPPKERDWSFKEKSILQVQLNKLLDCGAIRQCTAEPKQFVSNVFLVPKKNGASRLILNLKQL
NHFVETTHFKIEDHKVVCKLLSRNCFMAVIDLKDAYHLIPIQKCRRKYLRFTFLGRLYEYTCMPFGLSTAPYVFTKLMKP
LVAYLRSHNLLSVLYLDDFLLMDNSYLQSLHNISMTCKMLEGLGFLINYEKSQLTPNQTVRYLGFIYDSSNMTVRLPLDK
QQCITKLAKKVKRQSQCSVREFAKMIGTLVAACPAISYGQLYTKSLERAKYLALKNTHGNYSQIMFIPQYVREDLNWWEV
HISSRKSLLPPKFVLEIFSDASLSGWGIFCGGESTHGHWNEKERSKHINFLELLAASFGLKCFAKNLSGCCVLLRIDNTT
AVAYINRMGGVKHPHLHALAKEIWQWCEERKLWIFASYIKSSHNTEADWESRRLSPETEFELAPYAFRKICTFFQIPEVD
LFASRNNTKCRRFFSWFRDPEAEVVDAFTVPWTDLKLYAFPPFSLVAHCLQKIVSDRARGILVVPYWPTQPWFPIFTSLL
RKEPIFFEPDTNLLLTSHRVPHPLHQKLSLVAGLLSKKV
>DIRS-2_BF_pol#LTR/DIRS 1844-3778 [Branchiostoma floridae]
IYAQLNPVNTPTINSQGMGSPPVMGTSLPPVAGRIQNFFPQWKTICSDPWVLGVVSRGLRFHLTGRPRQLVPPEEVTGPE
EDLLAAEVLSLQQKGVIVEVPPLEDQFLSRLFLVPKKDASWRPVINLRPLNEYIVSEHFKMEGLREVKSLLRQNDWMVTL
DIKDAYFHLPLHQSVKKLLRFRFRNRIWEFQACPFGLNVAPRAFTKVLKPVVAVIRSKGIRIVIYLDDMLILGSSRAQCL
QHLQFVTDLLTHLGFLINWEKSQLIPTQRLTFLGMDVNSLLMTLSLPQEKIVKISRACTSLLRSPHVTLRQIAEVVGRLN
AAAVAVLPAPLYYRSLQSCLNEALTQNRPWDSKVMLSPAARSELVAWATCLPQWNGRAILPSPIALLITTDASLQGWGAV
CEGRRTGGRWSPQERKSHINELELKAAFFGLKCFASNLQRNSHVRLRLDNTAAVAYINRQGGCHSQPLCQMAIAVWKWAL
GKGLTLSAEHLPGQDNAEADKASRHFQDHTEWTLQPLLFQQACQTLHFHPEVDLFASRLNHQLPRYCAWHPDPEAWKIDA
FSCSWSELKGYAFPPVCLLTRVLEKIRLEQAVVLVVAPFWPSQPWFPLLRELAVEEPFFLPTGPDVLHLPGLEEAHPLWQ
ILRLAAWLVSGKH
>HTLV1_gag#LTR/Delta gi|9626455|ref|NP_057861.1| Pr gag-pro [Human T-lymphotropic virus 1]
MGQIFSRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPGRV
NEILHILIQTQAQIPSRPAPPPPSSSTHDPPDSDPQIPPPYVEPTAPQVLPVMHPHGAPPNHRPWQMKDLQAIKQEVSQA
APGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLR
REYQQLWLAAFAALPGSAKDPSWASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKECQKLLQARGH
TNSPLGDMLRACQAWTPKDKTKVLVVQPKKPPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDCPRLKPTI
PEPEPEEDALLLDLPADIPHPKNLHRGGGLTSPPTLQQVLPNQDPTSILPVIPLDPARRPVIKAQIDTQTSHPKTIEALL
DTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQG
VLYLPEAKRPPVILPIQAPAVLGLEHLPRPPEISQFPLNQNASRPCNTWSGRPWRQAISNPTPGQEITQYSQLKKPMEPG
DSSTTCGPLTL
>XEN1_gag#LTR/Copia 228-1385 [Xenopus laevis]
MEVLAKKMAMVKCSGQIVKCMQGSPDPWAKAQDYVARAIHDKSLSKSKGKGALVYAACCIAEQYKMLYVQKGNLEEKVHC
LNVLVDSLKFSVENAAAINVSNQQTTAEYKQVCIENEQLKQRLRDAESLVATFREAGADHSNCKSEIKQLKAQLGARDCL
VSAVKVENTAKNDRNVTDVKCIRDSNMNCELAVKSKMLNVDCCRQAKPPIVTLKCTENRTAGQKQDVPKVQVYKPIQPRK
QPGSERVFAIKATHPEKQSVYSTDKKCTQKKVFRCYACSRVGHIARNCTMQFYNTNNHKNGYNANESWKSSRWGFQNKSK
SWNTWIPYHVLKTQNERLSKENFTLKNAWGKFKTEIESLKSEFYTLKRSNVSQTTSLVGGNCSQH
>STLV-2_gag#LTR/Delta gi|9629499|ref|NP_056907.1| gag-pro-pol polyprotein (pro-po clipped) [Simian T-lymphotropic virus 2]
MGQTYGLSSSPIPKAPRGLSTHHWLNFLQAAYRLQPGPSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPKGYPGRT
IEIINVLIKNQTSPTPPPAPSLPEPANPPPLQQPSAPPEPHTPPPYIKPPATHCLPILHPHGAPSAHSPWQMKDLQAIKQ
EVSTSAPGSPQFMQTVRLAIQQFDPTAKDLQDLLQYLCSSLVVSLHHQQFHTLITEAETRGMTGYNPMAGPLRMQANNPA
QQGLRREYQNLWLAAFSALPGNTRDPSWAAILQGLEEPYCAFVERLNVALDNGLPEGTPKEPILRSLAYSNANKDCQKLL
QARGHTNSPLGDMLRACQAWTPKDKARVLVVQPRKPPPTQPCFRCGKTGHWSRDCTLPRPPPGPCPLCKDPSHWKRDCPQ
FKPPPTEEEPLLLDLPSDAIATEEKKLPGGGDVISPQQIS
>DIRS-1_CR_yr#LTR/DIRS 727-1947 [Chlamydomonas reinhardtii]
MCLQGYLAQLRLGQVASLVVDPGATPDATERHAVYQAGLEAAHELRQSALASATVARQNKAAAELWGWLQRYRPGVSPAT
CSDEDLAAYVMKGWLPNHHSRASADVPAGPSALKSHLSSLSGFFNRIDRGGPYNSSTSRGNPCESSIIEDLRTAYQREQV
QAGYAEVSAVPMTEAKYRALAFYLWAQYSAAATAIERLVALRDHLCVLLLWQTAVRGHDLGKLGTGDFVNPDNTALPFQG
FPLLPPWQWGSYLGPILCFCERGTKTHKLARAPPIFLMPDVAEPRLSIPRVLALYMALCSAADAPPGSAVADLLFRPLAP
DGKRFKETPLSSSAMGARLRMHLVAAGLYGGETVHSFRRGSLQNAQAVGLPPSSLLDLGQLRTPAVLERYLDSSRHLGRD
VRARVE
>DIRS-1_BF_yr#LTR/DIRS 3634-4557 [Branchiostoma floridae]
MLASWRGSTKKQYNGAWQKWVHWCNSGNRDPVRGPIQDVLDYLHGLFQRGLQYRSIGVVRSAISTVHAPVDGVKVGEHPF
VRSIMKGIFQERPPRPRYVVTWDVSPVIKYLKQLSPAKVLSLKQLSLKTAMLCALTSADRGSTLAVLDVTRLSYQAKGVL
FVLSHLTKTCRPNKPLKKVFFPSFPQDKSLCPMSYIKKYLARTKDLRGEEKHLFVSFKKPHKAVGPSSIARWIKTVMSLS
GLNTNQFAAHSTRGAATSAAERAGLSTSEILKAADWSSESTFSTFYRRDAQESNFGRAVLDAASKSAL
>Copia-70_ST#LTR/Copia 36-4351 via tfasty with Copia-81_ST, 76.2% SW:3688, 1 frameshift and 3 stopcodons. [Solanum tuberosum]
MADLTVATLPYHHPLYLQSSDTPGVALHTIKLTGPENYGLWSRSMRLALLVKNKLGFVDGTCLKSLYKDELAAQWERCNA
VVLSWISSTVAPNLLTTIMYALNARRVWEDFKERFDKSNLTRVYQLWTDVASLKQGTDSVTDYYSRLRDLWNEFDVLVPF
PSCECAEAKSYTNHLHQQRLLMFLMGLNETYSHVRSDILLKSEAPSVNQAYSIVVQEESQRVLGVVDSYKEPLTMLAGRG
QNYKGKKPLLDTPCEICGFRFHFTADCYRLVGYPSDFKSKRKSPQTGSNTSSSHYSGANAGRSGNSSHTGTGNFRSYANN
VAADKEGKGHNELSNDELDKVRTMLHHKDTQECQTNMTGNVSLSSSQCVHEWIIDSGATHHVTSCKSLLHDLKxLKGSNT
VQLPTGLRAVILHTGSSTILGDLKLKDVLHVPEFKFSLISVAKLTKDLSCSVSFFPNICILQDLYNGKVIGIGREHNGLY
LLKDEITAVAGTSVRTGNxTDLWHIRLGHPSLKAMQHISSLKDHVDAGKPYCCHTCPLAKQRRLVFPVSHSASDHCFQLI
HVDVCGPYKTPTYDKKQYFVTIVDDFSRFTWICLIQYKTEVTLILKNFLTMISTQFNTKVQVVRTDNGTKFFNMSCNTLF
SSLGIVHQSSCAYTSQQNEVVERKHRHILETARALRLHNGMSIKYWGHCVKTATYLINKIPSSVLQGKSPYTVLYGKEPN
LSHLRVFGCLSFASVLPRLDKFAPRAKKAVMMGYSETQKGYRLLNLENNQFFISRDVTFIEDMFSFKEDPQVPVKLILHD
SEIFVLGDDKVLETSNHDTPVIVSHELPEGSEAAEEVIVPEHSPHVDTHRGIDPAPVETVDPADVAVPPEETRRTRKPPL
WHKDYIVPQKINSSCLYPIEEYLSYSNLSHTYQSYVAAVSGVVEPSNFREASLDQDWIDAIQAEVNALEQNQTWTIVDLP
IGKKAIGSKWVYKIKHKANGDIERYKARLVAKGYNQxEGLDYHETFSPVAKMVTVRNVIGVAVSHNWPLYQMDVHNAFLQ
GDLTEEVYMTLPQGFQRQGENKVCKLLKSLYGLKQASRQWNLKLTDALVEAGYTQSPYDHSLFTKKIGTNVAVVLVYVDD
LLITGSNNKMIQDIKGALHNNFSMNDLGDLRYFLGIEILRSRTRILLNQRKYALELISDCGLSGSKPTATPLEPNKKFTS
VDYDEFTGNTSDPLFKDVTAYQRLVGRLLYLTTTRLDICFAVQVLSQFMQRPKMSNWEAGMRLVRYIKGCPGQGILLSSE
PSTQLEGFCDSDWAACPNTRRSVTGYTIKLGNSLISWKSNKQHTVSRSSAEAEYRSMAAAVSEIIWLVGILKELNVNIET
PVRLHCDSKAAIQISANPIFHERTKHTKIDCHFVSEKVKDGLIQTEYVNTKEQLADLLTKGLGAAQHRLLLGKLGVFDI
>Copia-22_MLP#LTR/Copia 54-4838  [Melampsora larici-populina]
MRTRRKDYGEAKPIAKRSYKKKEKVKDEVLLKSDIELPTFIKKHPEVLENLKRHPGLRPITPSVYPPTSDSLYPPIPINR
LHFIFRFSLLSLHSPPQPYFHNRRLNPLPTPLSQVPFFAPKGLLFEPTPRVTQYSTATRLEIRRIFQRSKTIKSQSTMSN
AGPPPPAAPPGMRQPPPHQTHAASVEDYRSNKFQLSMPTYVKGSVDTLKVDGSNYAEWEFKIGRCVDRVTKTTDYLSKDG
MKSSDPDGDAVVYSMIELTVPFEIQRRLSGSAKDAFRTIRALFFFPSRSGHMATWKEVLEIKYDDVSDIGDYFRKIDEKI
SDLERSGFEWSKDAITGVLYQIGLGNAFTNVNNTLNARLRATPTNPITAREVEESIRAEKQIHNTDNITPAFSQLDLNAN
AFNASPTMNRRGAGNTGSLYRAATPSRGRGVFVHSPQFQSRNLNSPLSRHLTSPPTRTYQLSPKFVPPAPGVVSKFHPSL
YNQGICYVCHNTGHWSDTCPTKFPASPSQPSTSRSSTTASTSTPPRSFRLNLIDANGATFTVDATGVEEDEGPLPDGIWA
SEGTLTEMWDNGDEGVSDTGATHMVTGKLEYLTDVRMLPRPIPVSVATKAPKAFVTHAGTMHIRSDDGKPIPIHNTFYSP
LASSTLISIPQLVKSGGSWDAKDGKMKLKFPCGGVVTSDLNLNARRWTVPVMKASAFDCPKLSPPSRIVHPTPPSLSSLT
TNATMIGAPPAVNEALKWHCRFGHTSMRNIQRMIKHGVVSGLPEKIDKTPFTCLDCLKSKSLRSITLTSSGTRLQPLELI
VSDVAGPYTPSANGARYMINFRDVATTYTESICVAKRDQVPQMFFEFVERMERQTGFKVKKLRSDGAGEYTSKAMNTWCA
ARGIINHQTNRYEHHQNGTAERSIRTISDMGRTMLHAANFGEDMWAYAHTAASHVHNRIPNAATGLKTPFELMFDRKPHL
DYLRTFGEPAIVHIPCEIRRKLDVRGKKMLMVGYPKGKKGWTFWDPETKVTTTVDSSLARFLSDGPPLPQPTPAPTSTET
LSDVENSKGSLAYVLNALRLGEFDGEHAVEEQDALALMVETQTSPYGIIPKSYTEAMRLPEAEKWKEACLEELRRFTDMG
VWEVSDPPEGQHLTDLKWVFTIKRDGRFKARLVAKGYSQVEGVDFTETFAPTATFAALRVVLVIAAYYGLKVRGFDVIAA
YLNSPMDHDVWVKSPPGFKLGRVMKLLKALYGTKQGARCWWKFMEEKLRALGFQPSQFDPSFYVLRRNGKMCLVWLHVDD
GCVASDSDELLKEIEKELSSQIEIKWEKDLTHIVGVQIDRVATNHFILSQSDLANKIVRDNQDLLSSFSATTPVPPNLSL
TTPTNELPLESNRYLSIVGAVSYLAVGTRPDLAFPVNFLARYSKSPQTEHWNAIKHLLRYVRDTANMGLDINPTKIKVRR
AVETFVDANWGGEFARSTYGHVTRLYGVPIAWVSRRQGCVATSTCHAEFMAVGAACRDTIWLQSLIQDIIPRIGTPLILG
DNKSSIHVSKDNAANKRTRHTEREFYYINEQLYKKKVDLEWIPGNEQLADTFTKALGPLKFREARGLLGVCAKRK
>Copia-22_BRa#LTR/Copia 113-4408  [Brassica rapa]
MSNDSSRSTETIIVSNTRTLLNVNMSNVTKLTSTNYLMWNRQVHSLLDGYDLAGHVDGSIEIPSPTIMTDDQVTVNTEYS
LWKRQDKLIYSQLLGAMTPPIQALLATTTTAADIWSTLAATYAKPSRGHILQLRQQLKQWTKGTKSIDEYVQGLTTRFDQ
LALLEKPLDHEDKIEFILEGLTEDYKTVVDQIAGRDTTPSITEIHEKLIQHELKLSVKSETISSVPVTANVATSRGNSNY
NSRGHGRSNRGSNNNNWNNRRNNYNNTGYTPRPYQGRCQICGIHGHSARTCSQLQLHGTGGNSNQSSVSSYAPWQPRAHM
ASAAAYNPNNWLLDSGATHHLTTDLNNLALHQPYTGGEEVTIADGTGLPITHTGSALLPTPHRTLKLRDVLYVPNVKKNL
ISVYRMCNTNGVSIEFFPAHFQVKDLSTGDQLIQGRANNELYEWPVQLSSPMSLFASPPQKPDLLSWHARLGHPALPVLK
SLVSKFSLPVSLSSTNDLFCSDCSINKSHKLPFYSNTLASSHPLEYLYTDVWSSPVVSIDGYKYYLVIVDLYTRYTWLYP
LKLKSQVLDTVIRFKALVENKFKHKIGTLYSDNGGEFIALRQFLATHGITHLTTPPHTPELNGISERKHRHVVETGLTLL
GQASMPTTYWSYAFTAAVYLINRMLTPVLGNESPYVKLFGQLPNYQKLRVFGSECFPWLRPYAKHKLEPRSASCVFLGYS
LTQSAYLCLHRESGRIYTSRHVVFNEKRFPFASSASPPTPPAPTPDMQTDFGETTLVPLRPLISTPPPCSAPHQQRSPAS
STPPATRSPAPLQQNQTAQELQPQPEPQPQPPSNTTPTSPSISNNTTSTPTETSSHTTSPSPPPSPPPSPSPPPSPSPPP
APTIPEPHHVNQHPMKTRSKNNISKPINKTSLLASVSTLKPKIPKTMAEALKDPKWRQAMVDEINAQLRNGTSDLVPPEQ
YQNVVGCKWVFTIKYKANGEIDRYKARLVAKGFHQQHGHDFTETFSPVIKSTTVRAVLHVAVTKGWSLRQLDVNNAFLQG
TLDEEVYVTQPPGFVDQDRPHYVCRLKKALYGLKQAPRAWYQELRSFLLTQGFLNSTADTSLFTFHHGSDTIYLLVYVDD
MVITGNNNKLIDRFIATISSRFSLKDLGDLSYFLGIEVTRTSKGLHLMQKKYIIDLLTRTNMMDARPVSTPMAPTPKLSL
TSGTPMDNPSEYRAVLGSLQYLAFTRPDLAFPVNRLSQFMQRPTDLHWQAVKRILRYLAGTSSHGILLRSDTPMKLHAYT
DADWAGDADDYCSTNAYIVYLGGNPISWSSKKQKGVARSSTEAEYRAVANVASEVLWVCSLFTELRIPLPEMPVLYCDNI
GATYLAANPVFHSRMKHIALDFHFIRHHVQTGALRVAHLSTKDQLADALTKPLPRPRFLELMGKIGVTHVPP
>Copia-23_SB#LTR/Copia 36-4387 via tfasty with Retrofit7, 1 frameshift. [Sorghum bicolor]
MASSSTAMSFQFSLIGCPVTEKLSKNNFPLWSMQVLSALRGCQLEHYIEPEAEAPPKKIAKDAAKPTELTDNPEYKEWVA
KDQQIVNYLLSSISKEVMVQVSSCTTSAEMWRVIVDMTASQSRGRIINTRMALATAHKGSSTIVEYFSKMISLADDMASA
GKRLEDEEIASFILAGLDAEYNPIVSSITGRVEKISLGELYTQLVSWEQRIDLQTSGGSGSSVNTATRGGRGGFKRGGGG
RDRGRGRSNNGNNGRPQRNNNGDNFICQLCGKEGHTAIRCFKRFDASFTGAPEQRSAAAATNSYGVDTNWYTDTGATDHI
TGDLEKLTMRDKYHGNDQVHTANGAGMRINQVGQSFVRTPKRNLVLNNVLYIPEASKSLASVHRLRDNDAFIEFHPDYFL
IKDQATKRTLLRGGCEGGLYPLKSSSPTNKASLGAVKLSTSTWHSRLGHPSSTIVHQVLSKNKIQFVSEFNKEQVCDACQ
KGKSHQLPYPVSTSVSSSPLELIFSDVWGPAPTSVGRNNYYVSFIDDFSKFTWIYLLKHKSEVFQKFHDFQSMVERQFNK
KILAIQTDWGGEYQKLSSFFQRIGISHHVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFITATYLINRL
PSKVIHGQTPLGRLFHQTPDYHTLRTFGCACWPNMRPYNARKLQFRSKQCVFLGYSNMHKGFKCLDVSEGRVYISRDVVF
DESVYPFARLHPNAGARLRSEILLLPPSLLNSSYGDNNISGPSGNDSLCTNPVVEHADFAGNLDSNDQDASANGGDFMQP
VALPFLASPGAGPDSDSPTTTVDLSGGSSSALAPTDSVTPSSNTDLPRVLPSPPPPAPGGQSGSAPTASASASAAPSASA
APSAPTGSSVPEIGSPMDTTVPVPAPPVLRPVTRLQHGIRKPKIYTDGTVRYSHIATASEEPYSLQHALADKNWKNAMDV
EFSALQKNKTWHLVPPLKGKNVIDCKWVYKIKRRSDGQIDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRLVLSLAV
SRNWCLRQLDVQNAFLHGYLEEEVYMKQPPGYEDKHKPHYLCKLDKALYGLKQAPRAWYSRLCHKLQSLGFVSSKADTSL
FFYRKGGHIIFMLVYVDDIIVASTSQEAVNTLLQDLHRDFAIKDLGELHYFLGIQVKRKKGELLMTQERYAADILKRVNM
QLCKAVNTPLSTAERLSITSGTRLGSDDSTRYRSIVGALQYLTLTRPDISFSVNKVCQFLHSPTTTHWEAVKRILRYVKG
TIGFGLKIRKSDSMLVSAFADADWAGCPDDRRSTGGFAVFIGCNLVSWCARKQATVSRSSTEAEYKALANATAEMMWIRK
LLDELGITYPRTARLWCDNIGAKYLSANPVFHARTKHIEIDYHFVREQVASKCLDVRFISTSDQVADGFTKALPVRQTVM
FRNNLNLIDKL
>Copia-25_BD#LTR/Copia 73-4305 via tfasty with Copia-42_BD, 5 frameshifts and 3 stopcodons. [Brachypodium distachyon]
MSTSPRRGGDLTMPAAGKYMPPAKRPGDGDGAGSSGRRGSNVPIQYPQLTEANYQLxAGKMKILLCHLGVWQAIEGEGAV
DEEMDQGAMTALSQSIPDDVMMSIMKYETAREAWAAIRTSWIGEERVVEARIQSLMRRFDRLMMQEGETVTAFSRRLNAL
VGEIRSLGEKLAERTVVQQLFSAMPKRFASIIGTIRxWGDLKTMMVAIGRLRAFEETEDEYQEAHGGGEYQLMLVTRVLE
QLMHKGKGGGSTSSASAGKKNAGRDRAQTGRGDKAESSGKKKKDRKFDKSKVKCFNFEEMGHFASECREPKKEKAHLVVV
EDDDKPALLSVEVYSLTPVVKPAPQEIVMLNEERLVPKLTGTRLMSRCLDTGASNHMTGSKEKFTELNTRVGGTVKFGDG
SVVEIHGRGIMLFECQNGEHRLLTEVYYIPKLKSNIVSVGQLDEIGCKTVIEDGVITVLDRQRKVLAQVKWARNCLYILR
VAQAYPVCLLAKSEDLAWQWHARYGHLNFYALKKLGQQGMVRGMPVIDHVERVCDGCMVGKHRRSPFPAEAAYRAEVPLE
LMHADVCGQITPATFSRKRYFLLVVDDNSRYMWVMLIRTKDEALAAFKKVQLAAKWKLNLKVKALRTDRGGEFTSKEFEQ
YCTKHGIERFLTPPYMPQQNGVVERRNQTVINMARSLLKAKNLPGTFWGEAVSTAVYLLNRVPTKSLIGKTPYEALYGKK
PNVEHMKKFGCVGHVKKVGVHLRKLADRSSPMIFIGYETPSKAYRMYDPKNKRLVVSRDVAFDEQMEWKWGxEEAGMNSS
DREVFTVSHNLTEIYAATEPASPMSSVVTEPASPVSPAATCTVAEPATPMALKKQVNTASRLQLSPPAPATAASPESTSS
ADFSGQNLRVRDLNSIYNETSEVVALDEELYLLGVEEPANFAEAEKESAWQIAMKEEMDSIVSNVTWEFSDLTKGHKAIG
LKWVYKLKKDTQGKVVKHKARLVAKGYVQRQGIDFEAAQEGWKLHHMDVKSAFLNGDLVEEVYVSQPPGFESAGHEVKVL
RLKKALYGLRQAPRAWYYKLDQTLVALGFERSPLEHAVYKRRSDTSSLIVGVYVDDLIITGGSNEEIIAFKNEMKKEFKM
SDLGLLSYYLGIEVQQEHDTISLCQSSYAARIVEKCGMGNCNATQVPMEARLKLSKVSDNPSVDASLYRSIVGSLRYLLH
TRPDLIYSVEMVSRFMENPTTEHMAAVKHILRYVKGTLQYGCIFTKSKIGMKLHGFSDSDMAGDLDGRKSTTGVVFYLGE
NLMSWLSQKQKVLALSSCEAEYMAASVAACQAVWLGRLLGDLMNKEPETVTLKIDNQSAIQLVKNPVHHERSKHIDTRFH
YIRDCVEEGLIAVEHVRTEDQLVDILTKPLTKQKFLEMRGRIGVHFVRPQQA
>Copia-24_BRa#LTR/Copia 274-4378 via tfasty with Copia-91_BRa, 83.4% SW:4190, 1 frameshift and 1 stopcodon. [Brassica rapa]
MDPTPGKFEIEKFDGKGDFGLWKFKMLAQLEIQGLLSVLEDEVSKLETDGGKVEEGVEVKKDPKKAEKDLRVRSLFSTCL
SDVILRKIMNEATALGMWRALERDYQTKSLPNRIYLKKKFSCFRMEEDKPLEENFDTFLKLVADLASIKIDISDEDQAIQ
LLSGLTTAYDPLVHTLQYGTGKDTLTVNEVITAAYSKEAELKQKGLNTRGKQSEGLYSETRGRASTRNDSGSNKNGNYKS
KNRFRSKSRGKQTMKQDKTCWVCGSDEHWKRDCPERKRSSQFPKPGGSANVAKELPGPIALTASLVVSDSEWILDSGCTF
HITPHKEFLSEFVEFEGNKVLMGNNSACTVQGMGKITIDNHDGSIVILSGVRYVPEIRRNLISYGQLEQAGCSYSGKDYM
VKFYKAGREVLSGRYINGLYYLEGTVRRPEANATTGTVDLTKRWHTRLAHMSLRSMETLARKGLLKKEEVGKLEFCEGCA
MGKAHKQKFPKAKHTTKGVLDYIHTDLWGSPNTVMSLSGAQYFLTLTDDYSKKVWIYFLKTKSEVFNYFAEWKALVENQT
GRRVKSLRTDNGLEFCNQKMDQLCRESGIRRHKTCPYTPQQNGISERMNRTIMDKVxAMLSETGLDSSYWAEAASTAVYI
INRSPNASIRFDIPEERWSGHEPEYGHLRSFGCIAYVHQVKEKTSPRAAKGIFLGYAEGTRGYRVWLIEEQKVVVSKDVV
FNEEKLFKDIEKEQLGTEKDQTQQSSQKRVTFRSVLEDVCEGESSRSGGDPKEVGSQGQGSQEESTTEDETEKEPEEDTE
GNSESLEDYVLARDRKRRVIKPPSKFEDADFLAYALASAEDIDICEPKSYQEAMKSKDQEQWNGAADEEMESLKKNQTWD
WVERPKGHKVIGCKWLFKLKPGIPGENQPPRYKGRLVAKGYAQVEGIDYNEVFAPVVKHVSIRLLLSAVAHFDLELEQMD
VKTAFLHGVLKERVYMEQPEGYVEKGKEKMVCLLRKSLYGLKQSPREWNHRFHTFMMEQKYERSEYDPCVYMKGSSVSDI
VYLLLYVDDMLIASKQPRTVQRLKEQLSQEFEMKDLGPARRILGMDIYRDRIRGVLKLSQGDYLTKVLKTFGMSDCRAVS
TPLGSQFKLQSLTKPEEQQQAREMENIPYTSAVGSLMYAMVGSRPDLAYAVGVVCRFMSKPGVSHWLAVKWIMKYVRGAL
KLNLTFTKNEDFMIRGYCDSDYASDLDRSRSITGYVFTVGGNTVSWRSSLQKVVALSTTEAEYMALSDSVREGLWLKGIC
EEMKLNKGEVEVHCDSQSAIYLAKNFVYREKTKHIKTKYNFIREVIADGDVKVVKVHTSVNPADMLTKTLPGEKFEGCLA
KLGVVEEA
>Copia-21_MLP#LTR/Copia 7-4564 via tfasty with Copia-75_MLP, 84.5% SW:4763, 1 frameshift and 2 stopcodons. [Melampsora larici-populina]
MSRFSRVNPRSIQLRHLRSSYLVILLFILNLVAMSSPSNTTGSPKSSSSSRSDASSTATVRRQTADLTSVSPLSSSIDMS
TTLVNDAIKIPQLTAGMFTNWNKRFHFALQTRGLLAFLVSDTPPTDAAELATSKRNQGxVMELMLSSIDATNEALIELTD
TPKDAYAKLAKAHGSSGGVLAAATICDIATVRLEPGQSLSEFITRVRNLQNQLAQYANEDKDIALSPKLLAIFLLNGLGK
DYEYLTAPFYADIATLTVSKVMDRLVLEVAKQSSSDQRSSASAFNARTSHVRPTSAGNHLGRKIGPGPNDLCNLDNHRGL
SHTNRNCYQQGRPRNRNSPTTVAANPKSSLSEAEMARRYMSIEAAHLAKKNAPPATAVPSAPAYAVSTQEFSAEAFVGDF
PDEGFSAQGYVAGNGISSTYGYILADTAATRSMVSNQAYFLHMRPISAINITGISEGRQIATHIGSIVLSGFSHLDHTPT
DILVPNVLYVPTMKVNLLSLSQLCAAGASFSGSAESITVTGMPGNYFVCEKTLDNTLWQTKVRSSISDFAYSASAERWHY
RLGHLNYSSIKHLVSNGSLKVSLASNSTAPSSCITCQKGKISQPPFLSHFPASTSPLNCIHSDVMGPFPSSMGGARYLVT
FIDDFSRHATIFPIKNKSDVFECFLKYKARVELLCDACIKYLHCDRGGEYRSNAFLSYLDKHGISLEQGPADTPQQNSIA
ERYNRSLIERVRCVLAHGSIPIKFWAEIALAVCFTLNHSPHTFLKFKSPLSKWNQNLPGAGSHDPDPSFLRTLGCSAIFL
SSKNPGKLDLKGREGVLIGYELGAKAYRIxDLEDKKVVITRVVLFNEEHLPFSHSPSFTDEPKFLVLEDPGYDIDSPPSV
TSSSSHAPTVLPISPITSIPTSTRSPSVPLPYSTRQLSNTTSHLRPLILSPAASPAKSPKSPIPPDASIISSGSGIVHAP
GGKKAVPARQSKRVTGKPNRLGDLQAFHAGIDSSDEPTYKQAMAASDADEWLKAMQAEFDSLKAHHVGRLVARPVGARVI
GGMWVLKKKRNEKGEVTKYKARWVCFGNHQVEGIDFNATYSAVGKSDTFRLLVAIAAYLKCSVVQFDIITAFLHGLIKEH
VYIQQVKGFIEPGCEGMVWELVKSLYGTRQGACDFSDHLRSVLKAFGFVTSEADNCLFIYQHGSHFLYLHIHVDDGFLIS
TSDELIEDFRQHLLKTYEVKWKPRPTLHLGMRLTYLNDGGIFLDQSHYLQDMLEKFGMDDLNSAKIPFPVGMKLSAGSPD
DIQAAAHLPYQSLIGSLNWASVSTRPDIAYAVSQLARYNSCYTFDHWNAAKHLVRYIAGSLSRGILFTGAMPVELKGFAD
ADYANDLNDRRSVTGYLFTFGDAIISWQSRQQKSTALSTTEAEYMSLSDCARQAIWFKLLFKDLNLPVSAVSVSSVGEAV
QLFNDNRGTVLLSKEPVVNERSKHINVRYHFIRDHVKLNNIVTAHVPTTAMPADFLTKPLAIEAFERCCGQASVCDCSS
>Copia-20_MLP#LTR/Copia 83-4603 via tfasty with Copia-75_MLP, 85.4% SW:5173, 1 stopcodon. [Melampsora larici-populina]
MPSGSPTHESSPTGTHRDLLPPASPADSNTSTTSSSTAIPPLDDTVSDDFLLLQLLPSADMSTPAGTNTEDRIKIPELTD
GNFPHWNKRLHFALQTRGLLKFLTEDSPPTAADGLALYRRQQGRVMELIVNSLNAANDSLIQITDTPKIAYEKLSKAHGS
SGGVLAAAAICEIATAQLESGQSLSDFIIKIRTLHNQLSQYANEDKEIALSSKLLAIFLCNGLGKDFEYITAPFFADLSK
LTVQSVMDRLVLETAKQSSSGQNTSAVSAFKSSSSPAVNNSAPNVNNSGSASNPNSNYRRIGSGPNDLCHLPNHRGLSHT
NRQCHGQKGKNKTGGHGSIPATNSLTEAEMVKRYLAIEAAHQAKKSSQAQTPQAPAPTYAVLTSNQFSALDLAEDFPDEG
FAAQAYVATNKSIDHDYILADTAATRNICFNRSMFVQLKPVSPVKITGISGDPQFAHHIGSIVIPGFSEEDHSTIDILIP
DVLFVPTMTVNLLSLSQLCANGALFSGSGTSITVVGMTGRSYFICEKTSDERLWQCKVRLSNSVSAFSASAETWHYCLGH
LNYDAIRRLASSGSIKISPRVSSSSINSCMTCQKSKIFCLPFKSHFPASSNVLNRIHSDVIGPFPVSLGGARYIVSFIDD
CSRYASIFPIKLKSDVFECFVNFKNQVEVLFDKKIKFLHTDRGGEYQSANFLSFLTTHGITLEQGPAETPEHNSVSERYN
RSLIERVRCNLHHTSLPVKMWAEIALATAFTLNHSPHSYLNHESPLSIWNSFIPDTGLHGPDPSFLRTLGCSAIYLAPRI
SGKLGLKGREGVLLGYEKNAKAYRVWDLEHKKVIITQSVIFNETLFPFSTSTLTSDSPKFVILQDDGYDIPDVTAPNLSS
LSPINSTNTSVPHIHSSATTQGLKPLLLSSISPRTSPSPITRRHHSITDVEPSSSTVFSNIRGSPSRTASTSTKDNVGRP
VRTTSKPQHLGNFIGHAGTDLNDTPTYNQAMNAPDADEWKKAMKIEFDSLVQHNVGKLVPKPLDARVIGGMWVLKKKRDE
NGVVLKYKARWVCFGNRQIEGIDFNDTYSAVGKTDTFQLLVAIAAYLKCSIIQFDIITAFLHGIIKERVYIQQVKGFVEP
GSEGMVWELGKSLYGTRQGAxDFSDHLCGVLLAFGFTTSKSDDCLFIFQRKSNFLYLHMHVDDGFLISNSDSLINDFKSH
MLKSYELKWKIKPTLHLGMHLSYHNDGSIFINQTHYLQDILDRFGMDDLNPVKLPFPVGLRLQNGSPEDVQAAAYLPYQS
LIGSLNWAAISTRPDIAYAVSQLSRFNSCYTFAHWNAAKHLIRYIKGSISQGILFKGSMPAELKGFGDADYANDPLDRRS
VTGYLFTYGGSIISWRSRRQKSTALSTTEAEYMAILDCARHALWFKSLFNDLKLPVSSVSLSSAGQAIQLFNNNRGTVLL
SKEPVINDRSRHIDVRYHFIRDHVRLRNITTAHVPTTSMPADFLTKPLSIEAFQRCCDQISVLECSS
>Copia-20_BD#LTR/Copia 36-4375 via tfasty with Copia50-PTR, 1 frameshift. [Brachypodium distachyon]
MSTTPEELKKALEDALAELKVTRLEAEGTKAELAAVKGKKVDVEEKPGMVVPVPAALPMRSRASINYPQLTRSNYTLWAM
QMRVGMQSAGVWAATSSEDVDHVMDRDALLAIYQGVPEDVLPSLAGKDTAKQAWEAIKVMNVGHDRVRETNLQTLRKAFE
TLEMEDTEAVDAFATRLNRMVSSIRALGDDVKELTVVQKILQAAPARFMHLVTSLEHVDLKTLTVEDLFGRFKAHEERVC
VCASAIPSTGEHLMLSKKQWESWSSRKSSGSAETSSSSGRSDGGSSRGANRGKAAEKPPQAAKGEKKKRKFKCYNCGEKG
HFSKECPNPKKEKALGAEVHDEDPALLLASTFVVVQGNEEEERVFLNEEKVKPKLGDNAGEESDKWYLDTGASNHMTGSI
EKFTERDKTIVGAVRFGDGSVVEIAGRGTVLILARNGGHRGLTDVYYIPKLRSNIISLGQMEEHGYKVVLEEGFLRIFDR
DRRLLMKVPRGRNRLYTINLKMSTPVCLLASVAERAWLWHARFGHLNFEALKSLAQHDMVKGLPLVNHVGQVCDGCLIGK
QPRASFPKQASYRATKKLSLVHADLCGPITPCTPAGNRYFLLMIDDFSRYMWLVLIKSKDQAFSAFKKIKASAELQVGSK
LKMLRTDRGGEFTSNEFNVFCEERGITRQLTAPYTPQQNGVVERRNQTIVAMARSLLKSQGMPGVFWGEAVMTAVYLLNR
SPTKSVIGKTPYEAWRDRTPSVEHLRTFGCTAHVKVTGPSGGKLADRSIPTVFIGYEQGTKAYRLYDSASKRICVSRDVV
FEEGRRWDWNAAGLPRHGDIEEYLVVHAEPEVDNSTSADPVQIQTEEHAAQTPDSGGMGTPENSAVVASAGSIATNQSSV
AEMSEAAEFETPQSALRMRSLDELYDETSPSWTPIDMDHVRQLELYMLGEDEPTHHAEALKHEAWKVAMEDELKSIEENE
TWELTTLPAGVRPIGLKWVFKLKKDAAGNTIRHKARLVAKGYVQRQGIDFDEVFAPVARLETVRLLIAVAAQEGWEIHHL
DVKSAFLNGELEEEVYVVQTPGFEQKGSEEKVFKLRKALYGLRQAPRAWNIKLDRSLISLGFVRSPAEHDVYVRSSGGAR
LLVGVYVDDLVVTGSNIDEVKKFKKQMLDLFSMSDLGLLSYYLGIEVKQSKEGIKLSQTSYASKILEKTGMLRSNACQVP
MEQRLKLSKSGEGEKVDATYYRSVVGSLRYLVNTRSDLTYSVGIVSRYMECPTTQHLATVKQILRYIRGTLNIGCSYVRK
SCEELSLLGYSDSDHAGDTDDRKSTTGVMYFLGGCPISWLSQKQKVVALSSCEAEYIAAATAACQGVWLSRLLAEMTRKE
PVEVQLLVDNKSAISLSKNPVHHDRSKHIDTHFHFIRECVEDGRIEVEYIATRDQLADILTKSLGRLKFHELRSRIDTVS
VPEACQD
>Copia-20_SI#LTR/Copia 113-4108 via tfasty with Copia11-NVi, 63.6% SW:1564, 4 frameshifts and 3 stopcodons. [Solenopsis invicta]
IATETTLKDIRVTKLTKATYSRWKIEIRDALESYQIWEVTTGRTTKPSEVRSEDGVVTNVKEIDDWRVKDSKARSVIRST
LDDTTFYQVCDCETSADIMKRIKAFFEPKTLNALLELLREFFSYSWKSNDTVGTFVAGLKVIARKIEALDSEDFGNKFNE
KLVMAKILGCLPKDFDSFVTSWSILSEEMSLEFFLEKLANAERNIEGCTDDVSVEAFKSQCKSANGQVMKTNEKKFKGKC
HKCGKIGHLKRDCRSKSDKSEKQEATKSQKEMKEFKDVQEKELSASSAHRLKDEGCIIADSDGSVHHTGNVEWFSLLRKI
DVPLTLNIADGKTLKATHVGDIRIEKSIDGKKWEKRVWKTVYYCEDMGSESLFSTTFMEKTRGYGFYHGNGTMQLMDGRK
TILGERRINSQYVPFIRVVPPSASVKITRSIELWHQRLGHVSDNMIPAMVKNNLVDGLDVILKKRDDCDSCHFGKQKVSS
HPTREKRECLPGQRFHSDVCHVGIMSWNKCKYFLTLKDEASGYRRVFFMKSKEEVSSILKIFFLAAEKETGRKAISLRTD
NGTEYINEKVKEVLRELNITHELSSPNVKQCNGMAERENRTLCDTARSLLFNADLSKTDRHLLxTEAVGCIPSxSGTKPR
SYNYNSYSEWYGKKPEVTHLRVFEAKAFVRIFDSTRHKMDPKAKKMIFVGYDRHTDKIYRVFDFEKKIVERVADVTIEDV
TNTNEQVLFPLMFEEQEEVSTELLKQEETLEDLSREDDSTDEFYSDEGEVIQVSSEPQKKRGRPVGLRSYQKPVLPSDRV
LRDRTDKSVRIAAMNVSLDPISYEDAISRDDSDYWKQAMDDEMAFIRKNTWELELLPNEQSTVSCRWVYKSKLRSDGTIK
RYKARLVARGFSQTYDYFEIFSPVVLYESVRAILAIVAKYNMELVQFDVKTAFLNSPLEEDIYMQQPEGYEVDGSSRVCH
LKKALYGLKQAPRNWNNIFNDFVMSHGFKRSEADPCVFVKGAYTDDWMILSLYVDDGLIECKRKRTQCIFVSLLISEFEV
TCHEPTCYVGMEIARNRETGTLCIKQQGYISRMLHRFGMEDCKSVKSPMNSSIESTELKETKDEEKRFPYREATGCLNYI
ATVSRQDISYAVSKLARYSNDPQQLHWKAVKRVMKYLKGTIDVSLYFHKELSDELIGYCDSDYAGELEERRSTSGYVFLI
HGGPIAxSSSLQRITALSSSEAEYMSISEALKELLCLRTLVKSLGLEQTKSTELKVDNQAAIAMSRNPEFHKRTKHIAVR
FHRVRQEQEAGKVHVTYVSSSNQVADLLTKPLPWPTISRCLGQMGMTSGTRG
>Copia-21_EPa#LTR/Copia 96-4482 via tfasty with ATCopia13, 85.0% SW:4961, 5 frameshifts and 4 stopcodons. [Eutrema parvulum]
MSDVPAKQVSEKADDVSSISPYLLYASDNPGAVITSVQLNGEHYNExSSEMLNALQAKRKIGFINGTLTKPAEGSPHLDN
WLTVNSMIVGWIRTSIQPKVKSTVTYISDAHQLWMTLKERFSVGNTVRVHQIKAQLAPCRQEGQSVLDYFGKLSTLWEEL
QVYQPIHVCSCGAAAAIAKKREQEKIHQFVMGLDDTRFGGICTTIVGMDPLPSLGEIYNKIVREEQRIASAPGREQQQDA
VGFLARQTGQLETQSKTETSIMKPRNTLCSHCGRTGHEKRDCWQIVGFPKWWTERNNGGGRGRGKGGRGSSSNSSGRGRG
QATVAHATSSNSSSFPEFTADQWRILTQLIQDKTGTGSSDKLSGKKVGDVILDTGASHHMTGNLSLLTDINSISPCSVGF
ADGSKTFASNMGIFPLSPKLVLTDVLYVPDLNCTLILVAKLLKQANCFATFTDTICVLQDRFSRTLIGAGEERDGVYYFM
DIVSAKSHKAAGGSDHVLWHRRLGHPSHLVFFGLSTISSSSKLASPGPCDVCFGAKQTREVFYDSINKTTECFSLIHVDV
WGPYRVPSSCGAVYFLTIVDDFSRAVxTYLLLEKSEVKWVLLQFFAYTEKQFNKTVKMVCSDNGTxFMVLSSYFRDHGII
HQTSCVATPQQNGRVERKHRHILNVSRALMFQACLPIKFWGEAVLTAAYLINRTPSSVHHGRSPYEILHGSKPGYKQLRV
FGSACYVHRASRDKDKFGERSRLCVFVGFAFGKKGWKVYDIEGNEFLVSRDVVFREDLFRFADQHSLPSDSAAPMADCVD
DLLIPSTDRGSSNEAVSPHDASPVSPVSVVEVPNDETPPSPALTELVETPTEIAASSHPSDEVSASSAPPTVVAASSPPA
RLGRGLREKTPSVRPQDYVSYNTVHDSIAHHALTPSNSEFSSTVQGKTLYPLSDFISDDHFSPGHRAYLAAITAAVEPKH
FKEAVKQRVWNNAMTTEVVALEGQRTWDITDLPPGKVAIGSQWVFKIKYNADGSIERYKARLVVQGNKQVAGEDYNETFA
PVVKMNTVRTLLRLVAAKQWEVYQMDVNNAFLHGDLNEEVYMQLLPGFRHSHPGKVCRLRKSLYGLKQAPRCWFKKLSDS
LLRFGFVQSxEDYSLFSYTRANIELFDDDLLICGNDPYMVQKFKDYLSRCFYMKDLGKLKYFLGIESRGPEGIFLSQRKY
TLDIPSETGNLGCRSAVTPLEQNHGLAKIVSPLLDDPKKYRRLVGRLIYLLNTRPELCYSVHILSQFMQEPKVAHWEAAL
RVVCFLKGSPGHGILLKSTSDLTLTVYCDADWSSCPLTRRSLSSFVVMLGGSPVSWKTKKQKTVSHSSAEAEYRSMAAAL
RETKWFRRLLTELGIDQTVPTRFFCDSKAAIHIAANPVFHERTKHIENNCHAVRDAVKDGLIVTEHIRTNDQIADILTKA
LVRVQFEKLVSKLGVQDLHTPT
>Copia-21_BRa#LTR/Copia 25-4190  [Brassica rapa]
MGDLVVASSKPKEGGSSIKCPILNTTNYTVWAMRMKILLKVHKVWEIIESEVSDDEKNNMAMALLFQSIPEALILQVGEL
DTAKKVWEAIKTRHVGAERVKEARLQTLMAEFDRLTMKDTETIDAFAGKLAEISSKSASLGEDIEEPKLVKKFLKSLPRK
KYIHIVAALEQVLDLKTTGFEDIVGRLKAYEERVTDEDESQDDQSKLMFANNDSQSSRESTRDSSNDSRGRGRGRSWNRG
RGRGRYNGGYNGGYNGGYNGGYNGGAYNGPRDASRITCFRCDKVGHFVAQCPELKLKLQEVQETEQNETQEADELMMHEV
VYLNEGKIVPSTYESSNCEDNVWYLDNGASNHMSGDKRYFSSIDESITGKVRFGDDSRINIKGKGTIEFTDRNGEPRKIT
EVYFIPDLKSNIISLGQATESGCDVRMKGEDLIMHDRDGKLIAKATRSKNRLYKVRMGLKETMCYLSTKTSESSRWHARL
GHINVETMKSMMKQELVTGIPNIDVEAKVCGSYLLGKQARHAFPQSTSYRATKSLELIHGDLCGPITPTTSGGNRYIFVL
IDDFSRYMWIALLKEKSDALCKFKTFKTLVEGETKMRIQTLRTDRGGEFVSKEFNDYCNETGIRRHLTAPYSPQQNGVVE
RRNRTLMEMTRSIMKHMSVPNYLWGEAVRHSTYLLNRIATRVLKNQTPYEALRSKKPNIGHLRIFGCIGYAKVEAKLLKK
LDDRSRILVHLGTEPGSKAYRMLNPQTQRVVVSRDVVFDETKGWNWSSTSSDQREAGNFKIVTGVFRNHGIEETEPVETE
EKATVKELESGTSAEDINESEEDHDESNEDEPMGLRRSQRLSTKPKYLDDYVLFLAEEEGERLLMCLNEEPESFEEAMKH
KEWLRACEAELESITKLDSWELVDLPPGAKAIGLKWIFKIKRNSDGSINKYKSRLVAKGYVQRYGIDYEEVFAPVARIET
IRLLINLAATNGWEIHHLDVKTAFLYGELKETVYVMQPEGYEVKGSEEKVYRLKKALYGLKQAPRAWNDKLNKSLLGLKF
TRCHKEPSVYKKEVEGKVLIVAVYVDDLFVTGACLKAINEFKGEMASKFEMSDLGRLTYYLGIEVKQHDEGITLNQNRYA
LKILEEAGMRECNPVHVPMEAGLKLEKSEKEKEIDATGYRKIIGCFRYLLHTRPDLSYCVGVLSRYMSSPRVSHGVAIKQ
CLRYLKGTTSYGITFERAGRNAARLVGYSDSSHNVDPDDGRSTTGHIFYFGNSPITWCSQKQDTVALSSCEAEFMAGTEA
ARQAIWLQDLLQEIIGALREKTVIRIDNRSAIALTKNPVFHGRSKHIHTRYHFIRECVEKGLMEVEHIPGTEQKADILTK
ALGRVKYKEMRDLIGVHDVKEKNFKFKGE
>Copia-25_Mad#LTR/Copia 142-4225 via tfasty with Copia-64_Mad, 2 frameshifts and 1 stopcodon. [Malus x domestica]
MARSSGADLRAPVFNGDNFFWQIRMKKIFRSHKLRDIVEKGLDTPVKEGEELTAAKSKLLKDNIIRDAKALGIIQGAVSD
QIFPRIAIQETANAAWNVLKQEFVGDKQVRAVKLQGLRRDFEYTRMGENEAFSAYLVRLFDLISQMRSYGKDISNQRIVQ
KLLISLPRSYDSIAYVIENTKDLDTVDVQDVVAILKGYEQRIDRHDESHTEKAFVSLSIGPKQNKYNGNQGFKPQKNWKS
KWKKGENRPANQTRKVAGTSDGAKNPCIHCDKLHFGECWFKDKPRCHNCHKLGHIARDCRVKKEKANQHVNFVNQVNDTP
TMFYVCNMSAVTKSEDIWYVDSGCSNHMTGMEDLLIDIDRNRTAKVEMGTRQLIEVTGKGSLGVDTKMGRRYIKEVMLIP
GLKENLLSVGKMMEHGYFLVFRGTTAEIYDDGSMSNLIARVPIKGNRSFPLKLKPKIQVALKASVYQSSTIWHRRLGHLN
VGSLKQLKEHDMVLGLPDLEMTNEICEGCALGKHCRDTFPKEASWRASLPLELIHSDICGPIQTSTKAGNRYFLTFIDDC
TRMCWVYFLRNKSEVFSIFKKFKLTVELQSGYKLKKLRSDREGEYVSVEFREFCEEMGMERQLTVGYTPQQNGVAERKNI
TIVEMAKCMMIEKGVPFEFWAEAVNTAVYILNRCPTKSLDKKTHFEAYSxRKPRIKHLKIFGSVCYAYIPRQIRQKLDET
STKCIFLGYGTCEKEYRLYDPISKKIIVSRDVIVDENACWDWKSQSEKTISVSIPRKKCGDQNVEGNSSEKSDVNDEFLA
SSSETNESIENGSRLVQMQSNTGLQDYDHTPLKFKSLTKIYAKCNLCIIEPENFEEVTKDKSWQKAMEAEIGMIEKNCTW
ELVDRLFDKPVMGVKWIYKTKLNLDGSIQKNKARLVAKGYSQKLGIDFNETFAPVARLDTIRTLIRLAAQKGWKLFQLDV
KSAFLNGVLNEEVYVDQPLGFVIKGKEDKVYKLKKAFYGLKQAPRAWYKEIDSHFCSFGFHRSPSEATLYIKATEAGILI
VSLYVDDIIYTGSSGALMDEFKAEMMGKYEMFDLGLLHHFLGLGVIQTEGSIFLHQKKYARTLLEKFGLKECKPVATPLA
TNERLSKQDGSEIADENLYRQIVGSLLYLIATRPNIMFAASLLVGFMHNPTRKHMGTAKRVLRYIQGTLDYGIAYEKGKD
DVLIGYCDSDWAGSEDDMKSTFEYAFSFGSGAFSWAPIKQSSVALSSAEAEYISAAKATAQAIWLRFVLSDFGEEEVEPT
QILCDNTSAIAISKNPVAHHKTRHINRRFHFIRDALQNGEVDMIYCKTEEQVADIFTKALARDRFEYLRKALGVISAKHL
EG
>Copia-29_GM#LTR/Copia 299-4303 via tfasty with Copia-93_GM, 81.1% SW:3865, 2 stopcodons. [Glycine max]
SLPVFDGKLFDDWKVKMLAIFGFQDVFEVVTFGFEDPGRKATEEQQLDFKQKQKLDCKARFLIYQCVNSKIFNKISKAST
SKEAWEILMKTYGDGEKNKKVKLQTLRRQYELLCMEEKESISYYFDRIQELVNAMRSCNDKIPDELVVDKILRTLPPRFD
HVAVAIEESRNLDDMEIEELQHSLEAHEMRINERRSNQEQALQARSNYKGKGKGPWKGNKPCSNQKHQDQGYNAGSEFFK
GKKSDQSQKKNDSSNGSMEWKFDKRKVRCHNCQKLGHYARDCWQGEGAKNKPKNQANLAQDEGSDSEAVMLMATTSKESS
IDTSxYLDSGCSTHMTGKKEWFISLDDSSKSKVRFADDSSLTAEGIGRVAFRDTNGKETVIEEVLYVPGLKTNLLSLGQL
LQKGFVMTMEDNCLKVFDRNQKLVIQANLSQNRTFRIGMNILKHQCFATSENKEEWLWHLRFGHLNFKDLHLLTSHKMVE
GLPHIVVPNEVCRECIECKxTRGNFSKFVPTKATEKLGVIHSDVCGPIQTETPGGSRYFISFIDVLTRKVWIYLIKRKHE
VLDVFKKFKCLVEKQSGKMIKVLRTDGGGEYVSKEFKEFCESEGLIHEVTPPYTPQHNGTAERRNKTLLNMVRCMLKSKN
LPCFFWGEAVSTAAYILNRSPTKRFIDTSPEEAWTGAKPSVTHLRIFGSICYKHVPDQLRRKLDDKGMPHILIGYHSTGG
YKLYNPESGQVSISRDVICDETRSWNWNSISSESQSRILLEEETPPAAPTTNQVPSVRKSSRTSQLPITLRDYELFQDSE
VNLEGELVHFALIAEAEPIEFDKAVTNKMWVRATKEEIDSIEKNQTWELVDPPSNKKPIALKWVYKVKVNPKGEVVKHKA
RLVAKGFLQKAGIDYGEVYAPVARIETVRFVVAIATNDNWSLHQLDVKSAFLNGPLDEEVYVLQPQGFVVKGSENKVYKL
KKALYGLKQAPRAWNRRINSFLSQIGFKKCTSEHGLYVRCLQDSKSETLIVCLYVDDLLITGSCEEEITAFKNQMMNEFE
MSDLGLLSYFLGMEFRMTQYGIVMHQSKYAQDLLKKFNMQQSNPARTPTEVGLVLEKETDEEPVDPTHYRKIVGCLRYLC
NTRPDLNFSVGLISRFMQEPRQSHLLAAKRIMRYIQGTTNFGILFPKGGADIGLELTGYSDSDWCGDKNDRKSTAGYIFF
YGGAPISWSSTKEPVVALSSCEAEYIAASEAACQAVWLDALIKELQLEKSGKVKLLVDNKSAIDLAKHPASHGRSKHIET
KFHFLREQVNNEKLKIEHCRTEVQLADILTKALKLERFRCLRDSIGIVCVNATLN
>Copia-29_CQ#LTR/Copia 170-4252 After removal of a tandem duplication (pos 3086-3253) [Culex quinquefasciatus]
MEYEQNPRVYLYNGKNWPNWSLRMEAYLRELKIFHCVQRTLEQEPFFPAVEADDAAEQARKEALRNVRREEDAKCVSVLL
HKIADSQLERIRGKRSPKAIWDTLQKAFDKKGVSGVFLLLNQFTTLRYDEEQDMEEHILEFERVVRELEAANIKFVEPVQ
VFFLLQSMPKSYAQLITVLKTLPVEQCSMEFIKSRLLNEDVERHHLAVKVEPKAEPSSAFAGKGGKFTFKCHACGKPGHK
KADCPEKEKAEQAAGSSHRRKKGKAHAAETKDGANDDVSFVSVAQEANSVETHEKFRWVLDSGASEHMVGEKGLLVNVRR
MESPTVINVAKAGVTLEGRYVGDVKMKADIGTRTLNCTVRDVLYVPGLLTNLFSVKKVAERGMEVIFGQKGARITKDGEV
KCTAKQNGRLYELDVKVVRGSAMVGESESKLSLWHRRYGHIGNTGLMKLIRNEMVEGLDVGKNAKPEKEICECCMKGKQA
RLPFEEATKPRSSRPLELIHSDVCGPFNPASWNGKKMFVSFIDDYTHFAAVYILEAKSEVLDAFRKYAAMATAHFGTKIA
RLRSDNGREYINTEFKKYCNDAGIVMEPTVPYTPEQNGKSERFNRTVMERARAMMEDAEIDWNMWSEAVLAAVHLINRSP
TAALRDAKTPYEMWFGRKPNVSKLRVFGSKAYTHIPKEKRSKLSAKSHVCVLVGYGMNGYRLWDPVKKQVIVARDVKVEE
KVMHKQVYTDDHMVSDSIVRQQEHEELDSDDDPDPEQEEEEVVEVLVDSEAESESDDEVFDQEVPEEEDQVPEENAVPEQ
EEAAAERRSGRARKRPARFSDYELEQKRPARHDHDVCVAFALNAEAYVDEIPDTIEALQKRDDWPLWKRAIDDELRSLEK
NRTWDLVEAPAGRRVVSCKWVFRIKKKEDGTAARYKARLVAKGCSQRAGYDYQETYAPVVRMSTVRTLLAVAVQQNLHLH
QMDVRTAFLNGHLNETVYMRQPPGFERGSKVCKLNKSLYGLKQAPRSWNERFNQFILKLGFKRSPYDCCLYTKVTKDVKL
YLVLYVDDIVLASNSLEELKNVKVQLAKEFEMEDLEELRNFLGLKIERDVEKGTLTINQSQYVSGLLKRFGMEQCKPLGT
PLEANVKLARKKDEEAVTEHPYRELIGCLTYLMLSSRPDISIAVNFLSRFQSAATDTHWIHLKRVLRYLQGTKEFSLEYK
RSETADPLVGFADADWGSDIDDRRSTSGFVFKVFGNTVSWTSRKQATVSLSSTEAEYVSLSQAACESIWLMNLLSDFGIV
LDAPAVIHEDNQSCIHIAEEPRDQKRMKHLDIRYNYIRECIQDELIKVQYIPTKDQLADVFTKGLPAVSYKKHRSTLGLR
G
>Copia-30_GM#LTR/Copia 86-4456 via tfasty with SHACOP3_MT, 73.1% SW:3641, 1 stopcodon. [Glycine max]
MDSQPHTPHTPPILATPNSTITPLSSFNYKISVKLDATNYLVWLQQIEPVLRVHRLHRLCVTPEIPPQYASEHDRLANIE
NPAFSNWELQDQLLLAWLQSSLSPAILPSVIGCKHTFQLWENIHQSFQSKTKAYARQLRTQLRTTKKGSSSISEFLAKIK
HISYSLTSIGESVSLQDQLDVILEGLPNEFESLVTLINSKIEWFDLEEIRALLLAHKQRLDKARITEEAASLNFTQSQPN
SKTPNSVNPNSATETQIAPQANWTTGNSNSGNYDSQNNNFKNNNQSRGRGGRNGRGNRGGRGGRSTVQCQVCHRTGHDAS
YCYHRFNAAYGSNQPYVHGNPYQYVRNTTPNNNNWAQSNPQWQQAAPQANFTGYAPQTNFTGYAMHPTMNNNLDTAATQH
VTLMQPPPGSAPPPSHLEHIFLGNNQGLRVTGISSYAFPSPSHPHHTLHLNNVLHVPSINKNLISVSKFASDNNAYIQFH
PSHFVMKSQDNDQILLQGKLEKAGLYPIHSQSSTTSSLSSRHHSVHSIVTSHNDLYFQWHHRLGHTNLDTMNNVLKSCNM
PTFNKNKTDFCISCCLGKSHRLPSQLSQSTYNSPLELIYCDLWGPAPMQSSMGYKYYISFIDAFSKYIWVYFLHDKSETL
TIFKQFKALAELQLNTKIKAIQSDWGGEFRSFTSYLSQLGIIHRIICPHTHHQNGVVERKHRHIVEMGLSLLSHSSLPYH
YWDHAFHTAVYIINRLPASHNHCIPLKVLFNNVPDYNFLRAFGCACYPLLTPYNNPKFQYRSKECIFLGYSTSHRGYKCL
DNKSGRIYISKDVLFNEKHFPYQITPPTTCSPNQTVTSAAPLGVVNHIPLQTPHTPNNLTPNNQPTPHTPTTFPSHTSSP
YISASASPTPTLPSTASSTIDPNSTPTSSPSPTSNTHHMLTRSKTGHLKPPLFPTINLTTTEPTTVQQTLSSIHRTEAMQ
QEYQALQANKTWSLVPLPPHKRAIGCKWIFRIKENLDGTINKYKARLVAKGFNQKYGQDYSDTYSPVVKPITVRTVLTIA
LTSKWPLIQLDVNNAFLNGQLHEDVYMQxPQGFIQGESTLVCKLHKAIYGLKQAPRAWYESLTNTLISFGFQKSKCDPSL
LIFNKHGCCLLILIYVDDIIITGSSNTAINLIVNKLNATFSLKQLGTLEYFLGIECKLTPSGALHLSQAKYIRDILHRAG
MEDCKGISTPLPANLKLSKTGADPFDNPTLYRSIVGALQYATITRPELGYSVSKVCQFFAQPLVSHWSAVKRILRYLKGS
IDHGLTLLPATTSAPLSINAFCDADWASDIDDRRSTSGACIFFGPNLVSWWSKKQTLVAKSSAEAEYRSLAHAASEVLWL
QSLLHELKVPIPPPVIYCDNQSVVAISHNPVLHSRTKHMELDIFFVREKVLNKSLVVSYIPAQLQVADILTKSLSKHLFY
NFRSKLRVLSTAELVGG
>Copia-32_VV#LTR/Copia 100-4418 via tfasty with ATCopia13_116-4591, 1 frameshift and 1 stopcodon. [Vitis vinifera]
FFLGTRDRSGDFITPTRLRGENYDDWASDIQLALEARRKFEFLEGTITGPQPPYTQSDWNTVNAMLVSWITNTIDPEVKS
TLSKFRDAKRLWEHFKQRYAMVNGPRIQQLKTSIAKCEESKSMSVTTYYGKLNVLWEELFKHEPLISCTCCSSCTAASLH
QARREQGKLHDFLMGLNTDLYAQLRTNILSQDPLPSLDRAYQLVIQDERVRLAKAVTEDKLAEVLGFAVRTGAGRGRGKT
ERPVCSHCKKTGHETSTCWSLVACPHCHKHGHDKNNCYEIVGYPEGWLDQNKADGSVGRSRQQAGRGRGSARANAASSII
GASSTKSSTDQLFTPEQWKALAGLIGNAQVPDDRLNGKFDTKSWIIDTGATHHVIGDLSWLFDTIALFECPVGLPNGESV
VATQSGSVRLSNNITLKNVLYVPKLNCNLLSVSQLTDDLHCIVQFNSYMCAIQDHTRELIGTGVRQDGLYYFGGAESDSV
QHVSVHNAASTLELWHKRMRHPLEKVVKLLPPVSNLKGSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHCDLWGSYK
HVSSCGARYFLTIVDDFSRAMWIYLLVDKTEVFRMFMSFIAMVDRQFSQTVKVVQSDNGTEFKCLLDYFSATGILFQTSC
VGTPQQNGRVERKHKHILNMGRALRFQANLPIYFWDESVLAAAHLINRTPSPLLHNKTPFEILFGTPPSYAAIHTFGCLS
FAHDKKSKDDKFASRSRKCVFLGYPFGKKGWKLFDLDTKELFVYRDVKFFEDVFPFGNPGAVNIIPDNIVPTVNVEIDSD
FADFVDDDADLPNPQAQTQNPNLIQPEPQAHQDLSPGPEVVPTVGLDSLGLDNTSNGQSAPMGKGMRDKFPSVLLRDFVT
HTVVVESPSPATPSPQHPSGTPYPIAHYINCDNFSVHYRKFLAAIISSNDPKSFKEAMKDVGWQKSMHEEIRALKENGTW
TLEPLPKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIVASKNWELHQMDV
HNSFLHGDLEEEVYMKLPPGFESSDPNLVCRLRKSLYGLKQAPRCWFAKLVTTLKGYGFLQSYFDYSLFTYTKDNVQINV
LVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYTLDMVSEAGLLGAKPCGFPIEQ
NHRLGLANGELLSNPESYRRLVGxLIYLAVTRPDLAYSVHTLSQFMQEPRIEHWEAALRVVRYLKGTPGQGILLRTDSDL
SLQGWCDSDWAVCPVTRRSLSGWLVFLGQSPISWKTKKQHTVSRSSAEAEYRAMAAVTCELKWLKGLLLSLGVHHPKAIK
LFCDSQSALHMAKNPVFHERTKHIEVDCHFVRDAITDGLIAPSYVPTVTQLADIFTKALGKKQFDYLLAKLGIFEPHAPT
>Copia-32_PIT#LTR/Copia 90-4174 via tfasty with Copia-12_PR, 85.5% SW:4601, 3 frameshifts and 4 stopcodons. [Phytophthora infestans]
MTTTKRAEVLLGSGNYFHWEYNMRMTLARKGLLAHIQVVTPENEITEAWIVNDSKALGIIAQGVELQHQTKTRSATRSME
AWETLREFYNRTTLHNRVTMTRRLHEFKMESGSSMAKHLDAFDELIVGLQTLGEPMDEVRQLVVLLSSLPAEYELISSIV
ENAKGVTLIEAKEKLLKEYERLEKKETTEKAFxVNGNAGKFRNGRGNGRKWNAPKRNVGFKGKCFNCDHVGHMKRDCPAT
KKGSQDDAVFAVGGERSAGWLIDSGATSHMTPHRNDLFKYKSLDTSMEVTIADGKKLHVAGTGTVKLTGLDGRRIRMVDV
LHIPGLDRRLLSVGKLAERGMNVEFQRSSCVIWGWNAAIASGKKVGKAFLLDCQQEEVRFVEYADADSEWELWHARMSHP
NKDALTKTQRSTTGVPPVRRGCETLCGGCMKGKQTVTAFPSRSLTKTTRVLELVHTDVMGPMRTLSKGGAKYVLTFVDDY
SRYVVTFFMKSKSDVGSKLKEFKALYENQWGERLKCLRFDNETEFVNKTVLELFELNGIVHQRSVPYSPQQNGVAERMNR
TIMEKARSMLHYKSMSTEWWAEAVSTAVYLINRFTNTSNSDVTPYELAFQVKSRMEHLRVFGSQGYAHVDDVKRTKLEPK
SFRCTFLGYAENVKGYRVYDLDASKVKVSRSVKLDEREVGGIYDTPSPASGTIIHVTRNDADTVVPAPEVERQSVQDEPM
EEAEEPAQDIEMDDVEPERNAELPQLPAPEERRxSRLELATYRAQPPAFQEDRIIFHPETERSTRPREPVFLPGNGYDDD
VERQSKSGSDGPPSPKRPRIDEDCLLTEAVLAYAASIGGVPDTPNTYAEAIASDLPAExRRVMKAELHSHSQNGTWTLVP
CGTATRSIGCRWVFTKKRDETGRVIRFKARLVAQGFKQKFGIDFFETYSPVANMTSIRAVLAVCVACDYIMEQLDADTAF
LNSGLVDLVYMDVPLGLENAEGMKCKLLKDIYGLKQAAEQTIHRVFLRNDFKSCGADQCMYVKRSRDAFVYVCLYVDDMI
IAAKPRGEIREVKGALKRAFKMKELGEAKFILGMEIDHDKAAGTLMIKHTRYIDGIVERFNQRNAKLLDNPCASNMKLSK
MMSPATEKERREMQSRPYRSLIGCMMYITTCTRPDIAYVVTQLSRFLENPGTQHWKAAIRVLQYLKTTRQHGIVYQSGTQ
DVKAEAFTDADWGSNIDDRRFVSGVMVMIGNAPVVFKSKYQRMVALSSAEAEYMARSMCTQEVLWTRAILKDMGHQQVGA
TxVWENNQGAIALASNAGYHARTKHVDIRHHFIRENVERSTIKVDYVDTKRQLADMLTKALGTKSLAFLREANGIKKRNA
AE
>Copia-28_SB#LTR/Copia 118-4317  [Sorghum bicolor]
MGDDTDKDTSDRALVGHLSWPMLTRANYQGWAAHIKCNLEGLNLWEAIEKGEKSERRKDRLALGAMLRGVPLEMHSLLLN
KETAKEAWEAIKTMRLGADRVKEVNAQKLLAEFESIAFKSEETIEDFAIRITKLVTDLRGLGEKSITNERIVRKFLRVVP
PKYGQVAVSIEMFKNLKELTIEDLIGHLRAAEERMEPSVEQVTEKAGKLLLTEEEWAARNKSRIVSGSATSKKGGGEDGQ
QHKKEKHWKPRGKDAGGESRDNGLTSMGTPRRKGVCRRCGIYGHFGFECKKKQKKQERQEVAHHANADGESGALLVARVC
NLVRSTEQTGQGVYLNQTRVFPSEYEVGSWVLDTGATNHMTGCRDSLASLDETVKGAVRFGDGSRVEICGVGAVTIAGRN
QVHRVLTKVYYIPSLRCNIVSLGQLEEAGCRVEIDRGVLTVFERVDGVLNVLIKAERKDRLYTLKLNLTVPVCLLSRMDE
VSWLWHARYGHLNFRSLRDLGVKKMVDGLPMIQQGEQVCDGCALGKHHRTPFPRVSAYRAEEKLGLVHGDLCGPITPGTP
GGKQYFLLLVDDKSRFMWIDLLKSKDQAFESFKKLQKAAESESGRQLKAFRTDRGGEFNSGVFTVYCNEHGIRRNTTAPF
SPQQNGVVERRNQSVVEMARCLLKSMKVPGRFWGEAVTTAVYLLNRAPTKSLDGMTPFEAWFGKKPGVRHLRTFGCVCYA
KRVGPGITKLSDRSVPGIFIGYEPGTKAYRVYDPENKRLMISRDVIFDEKRSWSWGVKGTVTADSEPEEPTFTYPDDDES
EDGTVADPTIEEAVSDSENSGSGNAELQLGSPVPTTPSQSTIQWATPPSGGTADSEGVPQRYRLVSDLLDSTEPVQLEYS
GLCLVAAEEPSTVDEALKAACWRRAMLEEMQAIEANRTWEVCVLPKNQKAIGLKWVFKVKKDPDGNIVKHKARLVAKGYA
QIQGVDFEEVFAPVARIETVRVLLALAAQGGWQVHHMDVKSAFLNGDLSETVYVKQPPGFVVGTGDNVLKLRKALYGLRQ
APRAWNAKLDEVLVALGFVKSKMDHALYRRVSKQSFLIVGVYVDDLIISGPDRGDINMFKAEMMTRFNMSDLGMLSYYLG
IEVKQGVDGITISQSSYTKKILETSGMAGCNPCDTPMEQRLNLYKSKEGEAVKVTEYRSIIGSFRYLVNTRPDIAFAVGV
VSRYMEAPNKSHWSAVKRILRYLRGTIGYGCKYITGAELRPLLLGFSDSDFAGDVEDRKSTTGVVYFLGGNMVTWASHKQ
RIVALSSCEAEYVAAAAAACQGVWLSRLIADMLGVKETPVKLLMDNMSAIALSKNPVYHERSKHIDTRYHFLRQCIEEGK
VEVDHVGTAEQLADIFTKALGRVKFIELRGALGVSNVQHD
>Copia-27_BG#LTR/Copia 41-4789  [Blumeria graminis]
MSKNTSLVILGETDSFSRWDASLRARLAKRDLTGHVIHDDPDVDPIFRPSEPKREDQITNDAWEEIWRTHRRAVLTWKNH
ETEARNIILERLSEKVWPRDHIGLSAKALYDSISSPRREMSSATYIDALRQFQAVKFTDSIERYCNEFQTAYQNMITAAE
ALSMSDDKPTEWAISEAAAAGFFLVGTIHVPWLSSWRDNRAIDASDRPTSLRSMMSSLRTVAANNHRQNNTYEPIHSASA
ANPKSSPNPDAMCKRCKHKHTNKKCFKQHPELATGQKGQKWKENFQKYGERLGKGKAIAEASDSEDEEYYRSRMEALLSE
PCDGKLSSGVAASASRYNKLPIIYDTGASHHFLPDRSVFAEIYNRQNPFRFDQAVGRSSLTEQGSATIKIGQQQLILNDC
LYSPRSASGIVSAGRLQRIAGVFPDYAKMLLVKHNHEQRDVPIARLILHNDVYYIHPLLHDKRIKDKSIAAPGVARIQKT
SNAQRWHQRLGHIAQNILKKTKDHSLGLEGIDTSDLKICETCHLSKAQRHVSRDPRPTPYEPLDEVFVDTVGKLVPSVDE
KQYAVIITDAKTRMHWVLTSQTKDQIASALVQWVKIMHHIYDKRVRTIFRDGGSEFSKTKVFCEQHGIRTHTSAPYTPEQ
NGASEAANKVVLRVTRSILIDANMPPCYWSYAMQHACFILNRLYCLRTKKIPIIDFLQSLRQPHMDKIDLRNLPRFGCRA
YKLISPKPSKFEPRAEKGWFLGFEVNTSKNFLILHPHKTPTKGWKWIVSFTPHATFNEDVLLGDELDQINKERATNYWNN
DQPITPTLGTYQSPSLPHNKLPNQDASTSDPNNLPLNASPPDLSQYPGNIPQSELNNDPIPANKPPPPNNTFITLPSLEK
NDKTYVDQPPTTPPVPQSTWQHMSPNPLALINPQPDPSESDINSNPDISDPIELNSPESDSEHYPNTKSPENQEAQKYDR
IMTGWDPIPSIAGQKRPHSPETGLIQQKGSSEIININNGAGIGKVDISNISRNQTDNAQSSESELQPNDFIMTGWDPVKS
QAGQKRACSPEGDMMRTKRGRAVKRVDYYRLHHGKSALESSDPKTWEEAMSSPEAQKWKKAANEEIKSLIDTGTFDIIKR
EKLPKGRKPMKCKWVFKKKYNADGSVDKWKARCTAKGFTQRPGIDYQETFAPTPRPETGRIMLVIAHYLKWYRCQGDVPT
AFLNPDLKIDLYMELPKGFEEENHVIRLRKGLYGLKQAAALWYDDARATLATLGLHPTTSDVCLYSNAQNDLFVLLHVDD
FQVIGPNNTKIELLMRALNKKYNLKRVNTNLFLGIHIKENENKLELSQGQYVRTLLKRHGLDDCKPANTPIERLIEPNGS
QCSRQSQLEYNSIIGGLQYLANNTRPDIAFAVNHLARFLNNPSAEHISAARRILRYIAKHPDKGITFTRSNEKPILEAYS
DADFAADPSTSRSTSGTLIRLASGPIFWKSHLQREVVLSTTEAEYLAATETCRQLQWIKSLFEELKLTKLIEGTECTNLY
VDNQSALSLIKNHDNHKRSKHIALRNHYCREQYKNGRIKVTYIPSLDQLADPLTKVKTQTQIH
>Copia-25_SI#LTR/Copia 127-4223 via tfasty with Copia1_DM, 67.7% SW:1940, 1 frameshift. [Solenopsis invicta]
MATHEAKTETRITKLSDCNYRTWKTEMKWYLRGKGLLDYVLGTVALNENATEAERKVFRTNDDKAMAAIGLHIEPNQQIH
IEDCNNAYEAWSSLEQVHQPINRIRIMQLKKEFYHIKMKDDETMSSYVARTKIAAANLKQAGAEVKDEDLAYAVLAGLPD
TYENLNMALASLPDDRFTSVEVIRVLLAEHDRRKSRNDDTSAEAMEALQINKGSKGTKSDKTSNASAAEKTATCFNCKKP
GHYARNCRSKTGNKQAQRDNKSKKNLDAFLVSLNNLDVEESWLLDSGCTHHVCKRKDWFQNFHEIEGETINTAANPEKQK
GTQLCAKGKGDIVLKTFVGNAQKAIVLRNVYYVPHIRKNLMSVSQIERKGKELTIKDGKVRIRNTHTGKIMCEAYRKNDL
YVVRAEVDLKTEAPAETNFASVKDSSIWHRRFCHVNNRAIEELATHNRVRGLNDTKMDKYKCDACYIGKSTKSPCKKIKR
RQSNDVCELIHSDLCGPMPVKSWSGNRYFITFTDDYSRKTTVMCIQSKDEVTDCVKKYIARVEREKGKKVKRFRTDNGLE
YCNRQLTDFFEDTGIKHERSNVETPQMNGIAERINRTLMDLVRSMLKSAKLPQRFWAEAVVTAAYIRDRVGHSSIKGDVP
LAIWTGRTPSVQHLKVYGCLAYANLPRQGRKKLDDRATECFLVGYASQTKGYRLWCRDKSDVITTKHVRFAEDKIGYEWL
YRDNTLHRYRYNNTWSESDSESEPEPTTTRRHSRSSTKKEESSSSPEDDSENSEESPTKKAISQTKACRIVGETDEPPRK
VGRPKKKKVIRNPYGRKGKPKSNTDDQSTCDTEDNSEVEIHHVEVVEPRDLNDALASPQATEWKRAIREEIKSLEKQGTW
EVTELPRGKRCIGCRWTFKLKTDSDGKICRFKARLVAQGFSQEKGVDYHETYAPVANFSIIRFMLAATANFSWYTRHIDI
KCAYLNGRLDEELYMKVPPLYKVEEGKVVKLKRPIYGLKQSGRSWNTEINNFLIENGFKRLRSASCVYCKGRWTILVIYV
DDIFIFSRKKAPLLEAVQLIKNGYETRDLGDITYALGVKIQRNESGDLQLSQRAYIESLLSRFNMEECRAASTPLEHGLK
LSKEDSSKSPDEKARMINVPYRQLIGSLMHLALYTRPDIMHAVTKLSQYNTDPGQLHWNQAKHILRYLSGTRDYALSYRA
EKAPAIQIYSDADWAGDLDDRHSYSGTVVALGQSVIQWRSAKQKSITTSSMEAEYVALSTGVKEAIWIQMFITELGMSEL
LPQTSELRCDNRAAIDFSKNCVEKGHTKHIDIAHHFVREKLDEKTITLSYIASNENPADIMTKPLRRVAHQGGVHKLGLN
VAKVGD
>Copia-27_BRa#LTR/Copia 14-4233  [Brassica rapa]
MADAIALYQPPSLRFVHSITVKLTDNNYAFWKRQFEAFLNGQQLLGFVTGTQAQPAETLPVPGINGVDATAPNPDYKLWF
QTDQVVQSWLLGSVTEEVQTVILHCSTSHEIWTTLDRHFNRPSNSRLFELQHKLQTVSKDGKTMMTYLQEIKNLSEQLRA
IGNPLSETMKIFSALRGLGRDYEPIKTTIENAVDSTVCPSFEDIIPKLTSFDDRLQSYSTGGDASSHLAFSATQQAAMYT
SRGRSSRGRGSRGRGRGSFSTRGRGFHQQFSSPHSDSEQKMVCQICGKSGHPAIRCWHRFDNSYQDDEVPNALAALRITE
VTDGSEWYPDSGATAHVTNSTQRLNHSQPYYGSDSVMVGDGNYLPITHVGSAELASTSGKLPLRDVLVCPDIAKSLLSVS
KLTSDYPCSFKFDCDGVRIKDKATKRLLMVGANAKGLYKLTEPRIQTFYSTRQHSTTDEVWHRRLGHPNPQVLQLLESNK
AIVVNKRLHKVCTSCHLGKSSRLPFVSSSFVASKPLERVHCDLWGPAPVASVQGFHYYVIFIDNFSRFSWLYPLKNKSDF
LSTFVKFKAMIEKLLSTTILTFQCDGGGEFMSTEFKSILTTAGIQQLVSCPHTPQQNGLAERKHRHVTELGLAMMFQSHI
PQKHWVEAFVTANFLINLLPSTVNTSTKSPFEVLHKKRPEYSSLRTFGCACYPTLRDYSASKFDPKSLLCVFLGYMDNYK
GYRCYYPPTGRVYISRHVIFDENSFPFSGKYFHLKQAGGSPLLQAWQKSFVPPPQQREPPRSDPVVTSHQVQQASLPLFT
AADFPPLPSQIQQPESSPASTVSSHECPERTAGYPDAIGDSAHASNRQDATEPVQTEQHVQEGCHPMITRAKAGIRKPNP
RYVLLTQKVAHPEPATVAEALKHPGWTAAMTEEIDNCKETKTFSLVPRTSDMNLIGNRWVHRVKLNADGTVQCLRSRLVA
KGYTQEEGIDYLETYSPVVRTATVRLVFHLATILKWDIRQLDVKNAFLHGDLAETVYMEQPAGFIDKAHPDHVWKLHKAL
YGLKQSPRAWFDKFSTFLLEFGFTCSKKDPSLFIYRRHKNVIMLLLYVDDMAITGNSTALLNQLIAEMSKQFRMKDMGPL
HYFLGIQAQFLAEGLFLSQQKYAEDLLAVAGMSDCAPMPTPLPLQLNKQHGQDTLFSNPSYFRKLAGKLQYLTLTRPDLQ
FSVNFVCQKMHEPTDSDFSLLKRILRYIKGTVTMGITFSRVSDCTLRAYSDSDWAGCKDTRRSTGGLCTFLGQNLISWSS
KKQPTVSKSSTEAEYRSLSETASEMAWMCQILRELGVPLHLTPQLFCDNLSAVMLTANPAFHSKTKHFELDHHYVRERVA
IGALVVKHIPGYLQLADIFTKSLPEAPFTALRRKLGVDVPSTPSLRG
>Copia-28_PIT#LTR/Copia 6-5030 54.3% sim to Copia-11_CP, SW:1021, [Phytophthora infestans]
MSPSGGSAGMSKPMKYTSEGVPKNWQGKDWQTYKWAMMNVFKEDDLKDIADGALTKDMLSTASAEDQEKFNKKQIKIMRM
IGTSVPPEILQQIRDKETGSEMWAELCNLFEGKQNEAIKAYTIRRLENDLWDKKLASGGDANLHLCKMFSIKSELVGLQH
TIEDSTMVDMLLESLPDLTEFECLKSSIRYGADPSVYTPVRVRELILAAAARQKEFRGKRQGKQGGHKSGGDKSGDPEKG
GNSNQQNKSSKQRKARLCFVCGSDSHIKAKCPEREEKNSGAGDRETKRKPQGNLTISQENKSGAGSNSEPKRKPQGNLTL
SQEGNGLSQILHEPADQGIVTGLITAEAHHEHETLHETLYDAQGTGVDEKLLEVNDQVPVDENFSGWWYFDTASNSHVVG
DRSYFVSYTEDASQLRSIRGISPNIAARIAGMGTVALTTEVNGEQTVMCLDDVFYIPGAEFGLFSPGLAHEQGFDFTFNH
DTQDFTILWEGKSVAVAKPQEATWGFLGLHPGQTSVKEPVNRRPMVNFTIAEGVGTLALWHERMCHTCPQYLKTMVDRGL
VRGMMLTQRHQQICDACHVGKQKKKAHRKKMDRATKWPNQVVYADLLIPSKDNRTRYEAVLVVMDGYSRFVRVFLLTSKE
SSVVNKHLQQYILWAERQAGRNVNGTVYKVKQVLTDKGGEFINKGMENWYARRGIEHIRVGPKSSQLNLCERTHQSLVDM
MKTTMVHAGFPRSLWPEALRNAVYVKNRVYNRGTQGIPYEMIFGMKPDVHHIRKFGSLAYVHVPVTSGRRKHDNNAKIGF
LLGYEEDVVGCKVYFPDEHTARFVSDLRVAEDVVYKDRHEGAVDEEDLESLHFTRRDDQDVDYDNRLNHEMATSKTMELV
SEPNSELSIGLVGGEMDVAANSEHEKGVQMADAVSNALNSRPDEIESTRELGRADLHESDGHGGVSLTDAASSACNLTTS
IPRSEIKASSSGNLCVGGKQSESSTQNDGADVGSVVGTRGSSLDGNEVDDDDEAGLPTDDDITVASVFSFDEKTISMENN
NSSSGVGLEEDPESTDEHQSAVVDNNNAQKMDASVCLDPVVIRETGKRTHRDETQSEEARVEHEAAKPDTKRTRTGLREI
QERRQPRRFDDFVMNAATSRVLDEHGRPIRACEVKIPRNRREALRSRFANYWMEAEMVEIAALKAKKVIQEIPNEDMPED
AKPVSTMWVYALKSDHQGYVIRFKARIVALGNHQRPGIDFKETFAPVARMASFRLLLGLAALLGLEVYGGDVNTAYLNAW
LGIRQYLHSINGYPCRVSGHSYVVLKALYGLRQSGREWNSELNDWFIQRGYQRSLTEPCLYYLFDGGTMVYVLVYVDDIL
VATNSKEYKDQLFMDLDNTYGLKDQGLLTQYLGVEVTHTSEYIMISQGKYAREILGKLGFENAHAVGNPMEVNSRLTPLG
EKESADGSFPYREAIGMLMYLATSTRPDLAYSLGQLSRFVANPSAKHIGTVKRVLRYLAGTLDYGIKYEKKKNNSKELVL
QVYCDSDWANDPDQRKSTTGFVFMLAGGAVAWMSRRQSVIALSTAEAEYIAACEATMEAVAGKNVLQEMLPLHDVKLRVG
IDSQAAHVMATNPTYSRRTRHIELRWHYVREQVQKGTVELHKVRGETNPADTFTKPLDKKRLKGLLLIAGIGAEK
>Copia-28_Mad#LTR/Copia 120-4407 via tfasty with Copia-87_Mad, 2 frameshifts and 3 stopcodons. [Malus x domestica]
MATNSSASDSEIHPSPVTNQFPNPSQSLISSITIQNIGSLVPIKLTTTNYLTWSALFAPIFRRYNLTGIVGGSMVAPPKF
LGDSTGNRTSTVNPKFVTWYENDQNILIWINSTLSDSLIPYTVCVSSSRELWSKLESRLASASQSHIHELRSRLRTITKG
DSTAAVYLQQIEEIADALASADAPVEDSELISVTLHGIPPDYDSFIDAIQFRLGSTTIDELHGLLLSKELQLNSRKKISS
ASIQAFNASPGLLPTPHDPPFSQAYVAQHFTNFHQGRGMDRNFSHSRNSQTRGMDMNFSTYRNNNPRNNFTRQNNQRYNR
GSRSHFTNYGKRISCQICKQFDHEAVDCPHRMNTNYGTKSQMALCASTSSTAPTWLLDSGASSHMTNSYANLQNPESYNG
PEQVYIGDGKGLPIIHSSSSTISTSSHNFDPYNVLHVPALKQDLLSANKFILDNSCSIHLYHFHFTVKDISTEKTFFKGP
VKDGFYPFHASSPFAGHPHAFATTSKASQDVWHQRLGHPTFKIMNQIVSKSCISISDRISKSLCSSCALGKCSKLSFHTI
SCNTRKPLEIVHTDVxGPSPTLSVHGFRYYIIFVDDFTKYSWLFPLKYKSEAFAIFTQFKSMIENLLSTKIVTLRSDSGG
EYINTQFSTFLRDHGISHQLSCLHTPEQNGCAERKHRHLVETARTFLTASKVPHIYWVEAFSTAIYLINIMPTALKCSPW
ESLFHRCPDYSTIRIFGCQCFPWLKLYNNSKLAPKSQSCVFLGYSLHHKGYKCLDIATKKMYISRHVIFHEHVFPFHHIS
TSPSPTATVPSPLFSTSIPSTLTFTSRSSSPNSSAPSPSISHPILASTFISSSPTLPPNPLLPPPLPQPLSATNAHPMQT
RSKSGISKPKAYTTTKHSIPPHLTQDFIPSTYLQAFKCPQWRQAMQEEFNALLNTGTWSLVHSHPSQNLVGCKWVFRIKR
KPDVSIDRFKARLVAKGFHQQQGLNYTETFSPVAKPVTIRLLLTLASKFNWFLNQLDVSNAFLHGNLSELVFMIQPPGFD
DSLQANHVxKLHKSLYGLKQAPRAWYEKLHTALSSLGFLGSQNDHSLFVKQTPDLVFILVYVDDILVTGPNSQACQDTQA
CQDTISQLSALFPIKDLGPLHFFLGIEVKRSSSDIFISQPKYILDLLKRAHMDGAKPCVTPLSTSSLDHTSPLLSNPAEY
RSLVGGLQYLTWSRPDLSFAVNLVCQFMQQPRESHLQAVKRILRYLKGTIDLGLWFPKCSKPLSLNVFSDADWAGCHLDR
RSTGGFCVFLGDSLISWSAKKQPIVARSSTEAEYRSLANTTAEITWICKLLVDVGLVLPCPPTLxCDNIFAISLAKNPIF
HARTKHVEIDYHYIREKVMSNAISVQFVCSHDQLADICTKSLPKARFLFLRDELSLHLPQFSLRGHIRDN
>Copia-12_CQ#LTR/Copia 80-4226 after removal of an 890 bp tandem duplication [Culex quinquefasciatus] 
MVLPNASGSGDGAQTNPPGSSSSLAGLPPIQRLIGRENWSTWKFAVQMYLEHEELWEIVQPTPNADGTLPAVNAKLDRKT
RAKIAMLVDPENFVHIQEAKTAREAWMKLEETFGDLGPERKIGLLCKLINTKLVNCSSMADYVNRIVTTSMQLRGIGFNV
DEEWVGALLLAGLPPEYKPMVMAISNSGLPINGDVIKTRLLQEVEEPPVTVALATKDKRYPSKQAAGQSKGPKCRSCHKF
GHIAKDCQNKNRLGGKGQSALSTVLSTIGAAEEDEWYFDSGATSHLTKDRGLMENLQDGSGTVTAANNGAMKVVATGDAK
LKASCCPGSPALDVRNVQLIPELTTNLLSVSQIVEKGNTVIFDKRGCQVVNPDGDVFATGTRVNNLFRFDAEKQSRAMAC
RESGQAELWHKRMGHLNVHGLKQLKNGLVTGIKFSDDGIGDCKVCALGKQTRLPFGKAGSRAEELLELVHSDICGPMEET
SMGGKRYYITFIDDKSRRIHFYLLKTKSAEEVLAVFREYHCLVERQTGRKLKTIRTDNGKEYINRMFQDYLKTNGIRHQT
TVDYTPEQNGMAERVNRSIVERSRCMLFEANLPKRFWAEAASTAVYLLNRSPTKGHAKTPEEVWSGKKPDLSHLRIFGTS
VMAHVPKQKRRKWDAKAEECVLVGYEEDTKGYRIFNKTTRSVTVSRDVRFISEGETSHAEVAATEQGAVYVKLDLLESLA
QPGTDGTRTTPTGQQPELCQPGPSREPDIPSEQEDQFEDTSDDETSGESSYETVEEDPADVTVTLSPALPPRTSSNPPVS
QVLRRSGRERALPGKLKDFDLGNKGVPRSNVSDNPGSGPAPADDRQSLIAAGRPRKRLNKASSCTDDPCTVGEALGGGQS
AQWTAAMQEEYDSLMKNGTWDLVDPPPNLKIVGCKWIFKTKRDSEGAVVRHKARLVAQGFTQKYGYDYDEVFAPVVRQTT
FRTLLAVAAKRNMVVKQYDVKTAFLNGDLEEEIYMRQPPAFVTDGNERKVCRLKKSLYGLKQAARSWNNKLHTVLAKQGF
IRCKADPCLYKKVKANKFCYVLVYVDDLIVASDASGLHQELVAALEKNFEISQLGDIHYYLGIEVERDDRGDFFINQAKY
INQVVVSNGLSDAKVSKMPLDPGYLKQEAEGEPLPDNFEYHKVVGQLLYLSVNTRPDISAAISILSRKTAAPTQTDWTEL
KRIIRYLKGTSHYRLQVSKTDKQAGLIGYSDADWAESTADRKSNSGQIFLFNSGTISWSCRKQTCVALSTAEAEFIALAE
ATQEALWLKRLLEDLDEDGAVTVNEDNQSCLKMLEKEKFSNRTKHIATKYHFIRDVKEKDEVKYIYCPTEEMVADILTKP
LPGVRMSKLAGACGLAPAPRGGV
>Copia-11_SMo#LTR/Copia 58-4326 68.3% sim to GmCopia11, SW:1874, [Selaginella moellendorffii]
MSCSKVGLILLQGVTAFDGRRGFNTWSEKMMRVLQMEELWEIVSPPTIAADARTRRAPAALGASTSVEGEVVDEEAIRAS
VAAARQQLDPGEQAALEKKESRAKGLILSKLADALMMRLRHKCACEIWAHLHNKYAVLSLSKISMVETCIRETRFHPGEN
FEEFLAKMQDLWMELEGSPAAFNESKKVLALCEAMQDSSFSSFVPTVRMMSLNFEQAEQTLRSELAARGLIVDFDQRPSH
VLISQSTSNASASSNQSGTDSALWAGNHRGRGGRGRGGRGRGRGFRGNPQQQQNSGNSGKEAAVRDCFVGKNKQECWTCG
MPGHYSKDCPVAAWLQRMNIGLAANAQEGETQELAASSEVAVPNVSEKLTIDSGSERHLMQSGSNFVQLRAAKGKCIRVG
DGSILPVRATGDVRVPLGRKSLLLKNAWYVPKIVKNLVSVARLTDEGLDVNFSKHQCQVLANGRPLLHFPRCGNLFEKEI
ASGEKSNAPEICMTADSSLWHSRLAHANPPLIRRMQKQELVDGFNDHVLQSSAKCHTCILGKQTRRTFKPAVIRSTRPLQ
LIHSDVCGPMRLFAQNGTKYFVTFTDDFSRHTDVFFLRHKDEVFSKFKQFVAEAEVKTGQRVGCLRTDSGGEYVNKSFQQ
FCAERGILHQRSCSHTPQQNGVSERKNRTIMNAVRCFLQESGLPKFLWAEAVGSAVHVQNLLPHSRNPNKIPEELWTGQR
QSVVHLRRFGCLSFAKRVDEHLGKLESRSKLAFLVGYDSNSKGYRLYQPGNHQIFVSTDVRFDEGTLYKDHVQEEGSSDQ
NMNWTPEEWSWDGVEDGDEDDDDLTIIYPSSPLADDHPTPVSGSFLPEEQGDATHRARTGEVDRLTRDLPFNVENYGRTS
SGRSSRAPHPKQWSFAATEIASEPVNFEQAIQAPDADKWISAMQDELNSLDENQTYDLVEAPEGREVVGSRWVFKLHRNP
DGSVQRYKARLVAQGYSQVPGVDFDETFSPIVKQTSIRMLLAFTAEFGLCAHHMDVKTAFLNGNLKEEIFMRQPPGFELF
GSRCSELVCKLRKALYGLKQASRQWYECLDSFLMDLGMQRLNSDGNLYLLQQGDHFVVIAVYVDDCLIVSNNHTVLKDVK
IKLMNRFVMKDLGAVRQLLGMEVDRDEADRTITLTQRQYVKKLLNQFNMTSCKSVATPVVTGIKFTSKMDDLFDQPSVYR
SLVGGLLYLANMTRPDISFAVGLLSRYMQSPSCYHWQMAKRVLRYLKGTAAHGLVYKCSGQSKLVLQAYCDADWAGNLDT
RHSTSGICCIIAGAPVSWGSKKQTTVALSSAEAEYVAASTAAREIIWLRRLLGELNQQQSDATILHCDSRSAIAMSKNPV
FHARTKHIDVQHHFIREHVAAGDLHLEYVPSQYQLADLLTKPLSELTFIKLRNQLGVSSTPSA
>Copia-12_PIT#LTR/Copia 278-4480 via tfasty with ATCopia63, 63.6% SW:1408, 2 stopcodons. [Phytophthora infestans]
MSDTSMESAPPSPKKPKIKDVRCSNFKGNEGYPGLGAGFENFIHEFEHAIRAEGLVNGSTWTNDLKASVIVNYLKGKASR
YYHKKSSEWQRRHDGENMPYSEVKRAMRAEFGCKLSQLELSTKMRCNKRESDSWHDYLEYLNFIEGLMEGDQTKLVMEVF
GNHACPELAATLLAAVPEDTTDYATESDRMKRLLYKLRGDxRRHSSKRDDRKIRQSDHRNENSNGVRGQKRNNNQKEERS
WRNHKSNDEDSDKQSRQQNNGQAFAAASGNRHQIRCHVCNQLGHKIFTCPVVEQAKKLASTTSSAHVATATDNTAVSTGS
VNTATAEEVDSSYSSDSDDEAHVWVAASTTDSANFFNSNVWTIDSGATHHLCMDREQLFAITPAFLSVRVANGNVELATE
KGSTVVTTTTRTGEKHTVLLKNVYYAKGIDRNLMSVAQLTQKGYSLRIREGPVYGTSDTGKQIAEVKKCPLNGLWSVGIE
EAAASFAEMKTSTLRQWHERLGHVSYQDLIRMMDKKLVGGMVASNRKVDFCMNCAEAKQARRLKNKHDTSASAPTNEPGA
TLCVDLKTDMTPDRLGHKHILTIVDHATNFNRVYLLSKKSKAEEHLENFISEFERQYDTNVKVIRCDGGGEFISGRLNRF
LLNRGIRHQLTERDMSSSNGKAERFHRTLMDSARAMLWASTLPQRFWGDAVLYASYIRNYLPTRANADYASPIEALSGKV
PSVSHILKFGSKCTSHIAHPSEKSTKKRAEKGIVIGVDPQKKAYRVYIPRTKRVISTTHIQNIDRLDTRAVGRYMDATDA
TNADEVANEGDRATEDVSSPREESELSEADVGSPVENQQLTSRAIQRIFGLNRGNSSPKGDDFQLPQSFLDEFATPVTAL
LTVAPREGTAFVTLLESDRTKVPMTVAEAMNSPYCREWMQAMQEELHAISSNATWEIVDIPSDGNLITAKWVLRIKFDNK
GELERFKARLVARGFNQKYGVDFEETFAPVLKIASLRLIVALAALWHAIVRQGDVPNAYLRANLDRPIYMRAPAGLRVPK
GKCMLLLKSLYGLKQSGKLWNDTIHAYLLELGFERSQLDPCQYFRRYNGSLTILGLYVDDVVVVSQRESDSNWTMKKLSG
QFQIKDMGPAKRCLGINIAQSTSGISMDQTTNIDSLLAKLEMENCRPVKTPMKSTRNLHSEDCEPHFDTNNMRETIGSLL
WISTCTRPDITMAVNYLARFVAAPTTTHWTAVKRILRYLKGTRELKLEFRRPQAPQHRIGVAIYSDADWAGDKDAKSTSG
GLLTINDMLISWYSKKQSTVSLSTAEAEYIAAATAVQDCLWVKQLIDELKLRVKGDNVILHVDNQSAIKNMENDVTTARM
KHINIKFHFIRDAIRNEGISIRYCPTTEMKADILTxPLGTT
>Copia-13_PIT#LTR/Copia 15-4472 via tfasty with Copia-87_BRa, 60.5% SW:1162, 2 stopcodons. [Phytophthora infestans]
MSPSNDTVAAESARGHPDADVDRERTDSSKYGGDDEVKETRDPQQKLVDLLTGLTERKERLEESQKRQEEQQRIAGTESS
VFESAIGLGRAMDREALDRTPTRNSPAMSPATYFGVKQRGYGFKNAAANVEMAQAPQPALPQHYVPPRMYQAHVQPPTMP
HGMPAPAQGFPRVPDTRQRKLGIRHFDGKELYQGLGSGFLSWGKRFVRQILFAERASGFTWTEEVKVDVLGHHLTGMAER
YYNQQVEGWWEEEPTLEHAMQRLLHTFATKITPAQSMKMFTAPKSSKRSWTEHYLYLVAVSEACGGADNLVLDNIVHYAD
ASMRVSMLSRLKLGRTDYLRQAEELAHFAQSTEIELRGKNLGRDVVNNVHDDRIDDRKCFKCGKVGHLKALCPNNKRRGT
ERGARADFVLAVDNSVNEKGVWILDTGSSRHLVNDEDLLEDPEDFESECVAADGGALRVTKRGSIVLETMAMGKKTTVRL
LDVQYAENLEQNIISYGMLEKKGYKIDYRGQHRVVAAMTGGPAVFDVEKVNNVLVVRAQVQGRKRSAGDVLMSVLAPSEQ
NEEVGQDVQRGTLMHFHRRLGHLNYDTILKMAKNPASGIFLTDEKRANCLACAQGKQTKNKQSRKDTGANAPIDVIGGVI
CSDLKGPMTPRDRLGNRYMVNFVDHRTNYCRIFLARTKDVAAQKFKHFMAFFERQFNCRIHVLRTDGGGEYQTLDLFCKE
TGIARQVSEPRNQASNGKAERMHRTIMNMVRSMVFACGLPLSFWGDAAEYAAYILNRSPSKANPGSKSPLQMLTKSTPDL
SDIVVFGSPCTVHTDAKNKSLGERGKAAIIVGKSDEMKGYRVYIPKDKVVVVTQHVRNVETLTDVQNEKLRRVHLEESEE
TNEEDRNANAASTGAGSKGKKKAKRKSKGGWTRERHRTRSTTQKAAGAGTTSDDNSQDGAIHDVVNSVREADPKNYGQAM
KSGLKDAWVIAMVEELRALEDNGVWTVEVPPTGSHVLHTKWVFKTKTDADGAIERFKARLVACGNEQLFGIDYNLTFAAV
MELSTVKIVLVFARRWRVPARHGDIPNAYVKADKEQHLEIYLAIPKGMQISEAVLRALGVDTSSKLVLRLKKSLYGLKQA
GRLWSKLLHAKLEEIGFTRCVTDMCLYYKKHGSDMTLVGVYVDDLLVTASKPELVEDCFQAMSVLSIKDLGVVRKFLGMR
VELHESDGYSLDQQAAIEELLEQYGLADANGVRAPIGEECNEAExGAPQLLMQSGGRGEPTKRSFQSLVGSLLWIARCTR
PDISFAVHKATRRTHQPTVNDWKLAKRIARYLKQTKELKVKIRVDAASGRRICLESWSDADFAADKADRKSVTGGVITLD
GAIVQWICKKxTGSVISTMEAEFTSASNVGRELLGLRELVRELEFAVVEPMTMYMDNQAAIRKLETEDSMSSAKHVDIRV
KFICDFARRGVIKPEYVESRLMKADLLTKALPAARLDELRKIFMLE
>Copia-13_EPa#LTR/Copia 129-4382 via tfasty with ATRE1, 80.8% SW:4496, 3 stopcodons. [Eutrema parvulum]
MTTATSETLNLNGTTLVHINMSNVTKLTASNYIMWSRQVHALLHGYGLSHHLDTSIKIPDLHITVNNVVSPNPAFDSWNR
QDQLIYSALIGALSLPVQPTVSRANTSAEVWKTLADTYAKPNRGHIKQLQHQLKQWTKGTRTIDEFVHGLTTHFDQLALL
GKIIDHEDQVDYILGGLPEDYKHVVDQMEGRDIAPSLTEIHEKLLNHEAKLLTAHAPTPTSFPITANYANNRNNNRSTSK
TTQNQSQPWKPQFSPRGQETRTLRPYLGKCQICGIQGHSAKRCHQLQTFFNQSQANQAILPTPPYPPIPWQPRAHLTTAT
PPAPNYNPWILDSGATHHITSDLNNLSLHQPYNGGEEVLIGDGSGLRISHTCSASIPSTSKTFILNDVLCVPEILNNLIF
VYRICNTNNVSIEFFPDCFQVKDLRTGGQLLQGRTKADLYEWPKTHPSPATYITATTTKPTLQEWHSRLGHPSLRILKTI
VSQFSLPFSNSQINSLCRDCSINKSHKLPFSETSISSSRPLEILFSDVWTSPILSIDNYKYYLIIVDHHTRYSWLYPLKL
KSHVKDTFIRFKALVENKFQTKIQTLFSDNGGEYIALREFLSTNGFTHLTTPPHTPEHNGISERRHRHIVETGLSLLTHA
SMPTTYWSYALSTAVYLINRMPSTTLSLHSPYQKLFHTNPNYTKLKTFGCLCFPWLRPYNNTKLEPKSSPCVFLGYSLTQ
SAYLCLQPQTNRLYVSRHVRFDETIFPFSSSLTPSPEPNITSDNPSPPNIIPLLPLVQNPTASPIASPPLSDPSPAMSTG
SSLPSHHTLASSSQRQAPSPAQSATLSDLAHDGDLSPAxAQSENxTITTSSPSLDHDAAPPSAPASLAPAPPALPPRHSM
ATRSRSGIVKPNAKYSLAATLAATDLEPRTVGQALKDDRWRNSMSDEFNAQVINHTWNLVPPPPPMVNVIGCKWIFRTKF
NADGSVQKYKSRLVAKGYTQQAGLDYNETFSPVIKSTTIRLVLDIVVKRDWPIRQLDVNNAFLQGTLTEDVYMTQPPGFI
DKDRPNYVCHLKKALYGLKQAPRAWYMELRTYLQSVGFKNSLADTSLFILRKCTSSVYLLIYVDDILVTGSDSDLIHATL
TALADRFSVKDHEELSYFLGIEAKRVPAGLHLSQRRYILDLLSRQNMLNAKPVSTPMATTPKLTLNSGTKLSDASEYRRV
VGSLQYLAFTRPDISYAVNRLSQFMHLPTTVHWQAVKRVLRYLAGTPTHGLFLRRDTPLSLHAFSDSDWAGDTDDFVSTN
AYVIYLGHNPISWSSKKQRGVARSSTEAEYRAVANTSSELSxISSLITELGISLPTPPTIYCDNIGAIYLCANLVFYSRM
KHIALDYHFIRNQIHAGQLRVKHISTKDQLADALTKPLSRATFQLLTNKIGVSKTPPS
>Copia-11_Pru#LTR/Copia 73-4722  [Prunus persica]
MSDKEQTPENKKSNSKNSSNSNSNSSMDTSNPYYVHSSDHPSHMLVPTKLNGANYPSWNKSMIHALTAKNKIGFVNGSIK
PPSETENPTEYALWNQCNSMILSWLAHSVEPDLAKGVVHAKTAHQVWEDFKDQFSQKNAPTIYQIQKSIASLTQGTMTVS
AYFTKLKGLWDELETYRTPLTCNEMKAHNEEREEDKMMQFLMGLNDTFSGVRSNILMITPLPKVRQAYSLVIQDETQRQM
TSGTTENFSIAAAIQSRPNNSKNKHCDHCDRNGNVIADCRQLKFHCNFCNRNGHTEDTCRFKDGTYTSSGQGNHARNENQ
GSNRGTNSRRNSGFSGSNTRTFTQRSHGFVPHAGSSFPSAHAAQQVGSSSVTQPSQNPIQAPDFSAQTFLSGLTSDQYQQ
LATAMSLVNTNASSSGNNHAFVNAAGLSTFTVPSINFVSSKPWILDSGATDHITSDSTLFTKMQPSHTPIVNLPTGSSAP
ITSVGTIPFNNTITLDNVLCVPSFHLNLMSASKITDSLNCCVILFPTFCVLQDLATGKMIGMGKQRGGLYYMSPLPRIPV
SCQVSQTSNLWHLRLGHPSPARFQLLSSLLPSKIVSVDNNCGICHMAKQTRIPFPLSSISSRSAFDLLHCDIWGPHKIAS
HSGARFFLTIVDDFTRCTWLFLMVHKSETQTLLKSFFTFVKTQFNFNVKAIRTDNGSEFLSMKEFLQTNGIAHQRSCVHT
PQQNGVIERKHRHILNVARALRFQANLPLIFWGECVLTAVYLINRLPTPLLSNKSPFELLYHQPPTLNHLRVFGCLCYAT
VTHPLQKFDARATPCIFVGYPMGQKGYKLFDLHTSKFLVNRDVQFHEHIFPFSTIPPQPASSTPIIPNPIFDIEPPLSIN
PISSPNDITCPPPAIPIPTSINTPTHDTTCPPLDASLVEPTSITPSSPQPHPATTSQVVPNTPPISHSSDHTLPLLHFPS
EPTLLGSPHSSPMAPTRHSTRPRQAPAWHQHYHMSNHASSSARSPSAVTGTKYPLSHFLSYSRISSPHYSFLVNISGTTE
PTSYAQAILDPNWQQAMQTELDALAQNNTWTLVPLPPGHKPIGCKWVFKLKYKSDGTIDRYKARLVAKGYTQVEGIDYQE
TFSPTAKLTTLRCLLTVAAARNWFIHQLDVQNAFLHGDLHEVVYMDLPPGLRRQGGNTVCRLNKSLYGLKQASRNWFSKF
SGAIQQAGFQQSKSDYSLFTKVRNNSFTAILIYVDDILLTGNDLQEMEHLKSFLLKHFRIKDLGDLKYFLGIEFSRSKKG
IYMSQRKYALDILQDAGLLGARPDKFPMEQNLRLTPTDGALLNDPMKYRRLVGHLIYLTVTRPDIVYSVRTLSQFMHEPR
KPHWDAALRVLRFIKNSPGQGLLFPASNNLALRAYCDSDHAGCRTTRQSVTGFCIFLGNSLISWKSKKQQHVSRSSAEAE
YRAMANACLELTWLRYILHDLKVPQVNPAPLYCDNQAALYIAANPVFHERTKHIEIDCHIVREKLLAGLITPSYVPSHAQ
LADIFTKPLGKNDYTRLSSKLGLHDIHSPT
>Copia-9_GM#LTR/Copia 48-4122 via tfasty with Copia-93_GM, 79.0% SW:3456, 1 frameshift and 5 stopcodons. [Glycine max]
MAMLKNNDQIPAKLPIFDGTNYERWTAQMKVVFRYQGVLDIISTDITPLEMNPTKAHRATHREQMKKDDKAIFLIHQCVD
SNVLEKIIDYEMTKEAWDVLATTYANDKQTKKVRLMALQRQLGLLQMESNETVAQFVNRLMILANQMKSCGEVVTDSMKV
EKVLTNLTPSFDHIVFVIEQSKDLETLKLEQLLGSLEAHELKMKNREGIKKKEKDSEKVLFAKNQKKGGGDSWKNKKGKG
KWRYNKQESSGSKSENQKKEGENNGNGKKKSKEHIQCYNCQKYGHYAYECSNPKVPRKRSEEAQFARDSDDEEAVMLMAT
VNSETGVKEWWYLDTGCSNHMTGHKDWFCKIDETMKRSIKFGDDMSIMAKGIGKVAIRRVDGSKVTISDVLYVPNMESNL
LSLGQLLEKGFSMHMEGEHMEVADSNWKCVLKIDVSKNRTFKVGVSTIKHKFLTAQSNASVWKWHKRLGHLNFNNLNKLQ
KKNMVVGLSSIEVPRQVCGRCCEGKQPRKVYNAVVPTRAKEKLAVIHSDVCGPFEIKSHGGNLYFVSFIDYFTKKLxVYL
LQRKSEVFVTFKSFKLLVEKQSGCSIKMLRTDGGGEYTSLEFENFCKEEGIIHEVMVPYTPQHNGTAERRNRTLLNMVRC
MLREKHLLHDFWAETVSIVAHILNRCPTKRLDSLTPEEAWSGLKPSVKHFKVFGSLCYRHVPEQNRRKLDLRAQTMILVG
YHSIGAYKLFDPLSKKIMISNDVIMDKTKELDWNIGMERQTNKTVEVELGEEIQDEVQIDSEQYVNDEQNVNDGPDVIGV
VSLRRSLRQISPPVKFQDYDVFPDATINVNGELMNLVLLVEAEPISLEEALASPHWRKAMEEELRSIxKNNTWEMVNLPS
NKKAIEVKWVFKTKVKPSGEIAKYKTRLVAKDFLQKPGLDFNEVYALVARIETVRLIVAIASMRKWTVSQLDVKSAFLND
PLEEEVYTRQPPGYEKISMEDRVMKLNKALYGLKQAPxAWNKRIDGFLQKQKFLKCTTEHEVYLKDYGVIGVVMLCLYVD
DLLVTGDSKQEIDRFKKEMMDEFEMSDIGRIAYFLGMEFVTTKSGIFLHQKKYATDILKRFNMLDCNSATTPCEPGIKLS
IGEDTNLVDSTLYRQLIGSLIYLCNSRPDITYGVGLVSIFMKKPCKDHLLAAKRILxYVKGTLECGILFPAAKENSEIKI
VGYTDADWSxDVGDRKSTFGYMFMLGNAPISWCSKKQEVVALSSCEAEYISTAFGASQVLWLGMLLEELNIKCSNVMKLR
IDNKSAIDLAKHPIAHGRSKHIKVKYHFLRDQVNKNKLALEHCRTEEQFANMLTKAFKPKRLEEMKNKIGMHKLIDLN
>Copia-9_DPu#LTR/Copia 595-5059 via tfasty with Copia-5_DPu, 2 frameshifts and 1 stopcodon. [Daphnia pulex]
MATLLKHLFLSPPQNPEDVNVIQNAAAISDWEKRNTLAMRIIYSSIQEERSRPLMSCTLAQEMWTKMETMWTEFAADLAP
LLWSQFYGVKFLPGQTVMEFMSEVEHIVSRLRAIDGIVLLDNQIIAKITMSLPPKMKLIFKPAWESTAAAERTLRNLTSS
SREEEKMAEALLSSKKIDPAQPSTSELARDGKEGEGRSTRTCWECGDTNHIRANCRDYKRKLKRKRDEEEEDRDKKRRRW
EREDDDRSRQDKDNNQWRNRRERDDRERRGRDYGNNNDERRRRDQKDSKKENNGRRRGYSYSAATSDSRSDKPTEWFADS
GATQHMTGNRDLLVNFVPTGSECWMVNGIGESKLAVAGQGDVNVVATANGRNVKGTMRGVLFVPGLMINHSSIQSSFIYT
VIYPGLGINLYSIGSATDEGIEVHFANNTVTFAHKKVIIMEGKRLGKEALYHLNIRAEQYYPRTEQALKGARVEPLSIxH
QRLGHLNNKSILKMASMGRWDSVKGLALFKDQLNPSDHCRGCLQGKMCRAPFMSTRIKTTSIGQVIHSDVCGPMQVGTQN
GERYFVAFKDDFSGWIEITLLKYKSEVPDTFKKFKAKLETETGEKARSFVSEYHIPPLIFSHLFQQVKILRSDGGGEYRG
NEFKDWLASTGITHQVTPPYTPQLNGVAERANRTIVESARSQMYGRKVPMELWGLAMQCAAYVKNRTVSSVNNITPFELW
FKKRPDISHLKVFGCLVFIHVPDEKRKKLDPKAVEAMMVGYVEGSTSCYQIWDPRARKLVISRDVTFEEQSMMELSEIQT
ATEEKDYYSILPTADDHKHGTGANRMDQEEVAPRAEQPVHQGEEEVRPIDQPQEDETTQTQGEGNHHQDEQSDELSYGAD
PDQDEQIDEPFYGFDLAMGGVRRSERIRQARRMPTPADKMRQLRGYPANVLTDENESVGPSTKVNFHVAFILNHLQSFFS
ATKVYGKQELTYRQALSSPDAAKWKGAIKDEYLSLIKNGTWTLAPLPPNRKAIKCKWVFDIKQGYEGVDERYKARLVALG
CSQIPGLDFDQTFAPVVRLSTFRLFLAMAAAGNLEILQIDVKTAFLYGRLEEEIYMHQPEGFAVPGREKEVCRLIKSLYG
LKQAPRVWNTELNDAILQYGLIRSEEDQCVYYRLQGEEWVAVLFFVDDGFICGTSKEIVKKFSDHLKRKFEIRTLPAGRF
LGMTIRRDRENGKLSISQPDFVDAVLKKVKMEGCNPVGTPAEPGLPLTASMSPQQQKEKEEMKNIPYKEAVGALLYLSTT
TRPDISYAVGQVAKFSQNPGIQHWKAVKRIIRYIAGTRTYGILYSQEKGEMVTGYTDADYGGDLEDRTSTSGCVFLCSSG
SISWFSRKQECTSLSTTESEFVAASEAAKEATWIRSLLKEIQRRGQEPIPLLCDNQGAIRCAHNPELHRKMKHIDIRFRF
VKRAQESGVIDARYVNSQDQIADILTKPLPLPKFQYLRKKLGIIEVNTM
>Copia-9_PD#LTR/Copia 32-4141 via tfasty with POPCOP1, 88.8% SW:4802, 1 stopcodon. [Phoenix dactylifera]
MNSSSVQSSVPKLSKENYDIWCIQMEALLGSLDVWELIVDGYVKPESAEAEAALEKAEKKLLQDLRKRDKKALYTIYQGL
DDSMFEIVSEAKTSKDAWELLKKAYSGIEKVKKVRLQVLRTQFETLHKEGTESISDYFTKVLSIVRQLRRNGEKIEDVRV
MEKILXSLDARFDLVATVIEESKDLEEMSLEQLMGSLQVHEQRLAKRGEENSVEHALQTKLTLGDKKSESSRGGFQRGRG
RGSRGRXRGGRWQQSNETKEGNDXGNSFRSRGRGRSRGRGRGPGRGRGGQSKRRYDKSEIQCYYCKKFGHYASECWYNTN
NNEEKVNFVDKEEEEKQEPVLLLAYDKFEGCNSSTWYLDTGASNHMCGEKEFFVELEEKQYGNITFGDLSQKPVKGKGKI
LLELKNGEQRYISDVYYVPNMKNNILSLGQLLERGYDIQMQNLSLSIRDKNNTLIAHVKMAKNRMFSLTLSIDHSNCFKA
TVADDSTLWHLRYGHLNFQALKLLERKKMVIGLPRIEHPSKLCEVCVLGKQHRKPFMKGGSRRSNQRLDLVHSDVCGPIN
PTSIGGNGYFLTFTDDYSGKTWVYMSKEKREVLSKFKEFKSMVEKRSGCYLKCLRTDRGGEYASDEFKXFCKENGIVHQF
TMPQTPQQNGVSERKNRTIMNLVRCMLKERRVPKEFWADAVVCATYLINRFPAKRIGDITPEEAWSLRKPRVDHLRIFGS
VAYAKIQEEKRTKLEDKSQKCVLLGYGENSHGYKLYNPTTKKFVMSRDVEFDEEQIWNWASNDQQKQVVFDDEKEQKDTR
EGLNVAENSPQPAAIISSSPAARKTRSIQDLYNVARRIDTDDEFNMLCLFAGFDPLTFEEAYQESKWRKAMQEEIHAITK
NNTWELTSLPQGHKAIGVKWVFKTKRNAKGEVEKHKARLVVKGYKQEYGVDYEEVFAPVARMETMRMLISVAAQKKWKIF
QMDVKSAFLNGHLEEEVYVDQPPSFVVQGEEEKVYKLKRALYGLKQAPRAxNSRIDGYFIQNGFTKCPYEHAIYMKTNLQ
GDVMFVCLYVDDLIFTGNNLSMIEEFKSSMAKEFEMTDLGLMAYFLGIEVKQGNDGIFISQKKYAKEILAKFAMDDCQPV
DTPVECGVKLTKEGEGKLVNPTYYKSLVGCLQYLTCTRPDILYDVGLVSRFMETPKNSHLKAAKRILRYIKGTLDYGVFY
SSYAXLELTGFSDSDWAGSYDDRKSTTGFVFYLGEAAFTWSSKKQNVVALSTCEAEYIAASSCVCHAIWLRKLLEELQLK
QESSTKIYADNKSAIALAKNPVHHERSKHIDTRFHFIREHVKTKDVKLIYVKSSEQVADILTKPLSVQVFQKLRRLLGVM
APGGTSLRGE
>Copia-10_PGr#LTR/Copia 649-4695  [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MEPFSRKDAMDDKGIASIPKLNGDNYSIWESKMKFFLDSRQLIDVCLQEQPSPPTDLIAAKHSCALFHLSSVVDDSIYNS
VFKLSSNITPYNVWTTLKKKYASKTIFSLCKVWRTWDTIHCDRGLISYVDRCLECLGEFKTIGYDVTQDVFAVCIISRVT
TIKQDLMEGLMLDEGLVSDPFRLLEKLRTLAVHEQVMKPDRSSIPSTSALPTNSQEKRPYQHPCENGHDPKEKHKQKNCW
YDNPHKKPKRFQSNYQPARANITQSSQMNTVQHQSSSSNDNNENAVPAFSYCSIVKSSSVVKLGAILDSGASNHMFNSLD
FFVDSEPVFIFIITGDGKSREELVATRKGTALIQLNDSKVITLKNSLFVPNLTRNLVSLPQLIDKSISIRQTGKLFEVVS
NNQEKICSLDLANQLFEIYGDISPVHQKTIALLTDSKEITGFTKWHNRLGHANKDRLKVVIPSDENLVKEECCDSCMKGK
MTRKSFKHHFDPTSAALEVVHGDLVGPITPSSNGGARYFLTLVDQHTGYINITILKEKSDAPDAINKFKIFYENQTGNRM
KKLITDGGGEFCNKNLSSLLEAAGVQHNVSPPYTPQQNGVAERANRTILDMTRCILLHSNLAPEWWAEAVKTSCAITNCL
PSLSRSRTSPIELLFKKKPNIKIFRPFGCKVWSLKPEVHHDRKFDSLXREGVLIGYANDYSTYKVVRLDNLQIINVKHAH
FEETVFPSCPALRKSISNLDTSNNLPTFEKLSTLPFEEDSLPTEEEENIHSQELFEEEVISEKQFDDDSNQDSSKIISSN
IDESNILNYSRRTALISLAPKTHHQAMKGEETEEWKQAEKKEYENMDSHKAWLVRKRKEEDTPIPLTWAFRKKLGSNNEV
TEFKARICVQGFRQSFGLDYFAKYAPTGKPCSLRLLISFAVNNDLKIHQLDVRSAFLTCPLEDKVTVLPPPGYSGEEDTV
FELRKAVYGLRQAPLVWYKRLSNFLKSIDFNISVSDPCVFWRTQQSGRPMTWIYAHVDDLVIISSDPLVFKEEIEKEFAI
KYLGDAEFLLGMNITRFEGSVKINQLQYIERKLIQFNLQDAYPASCPLSPRIQFDKATKEDQEALKHLDLNYRSIVGSLN
YLSILTRPDISYAVSALSQFLENPGLSHYQAAEQVFRYISGTREIGLLYQKQEDSSLKAYVDADWGNCLITRRSVTGYVA
MVGNHLLSWKSNKQDTVSLSSAEAEYKSLSDLSREMVWITSLVNETQVLKSPSKIKVYVDNKAAIDLANSETAQNGFRTK
HMNIRLHFVREHVQSNLLNLVYIKSNENPADFLTKAVGRCTIRRSLKELGIAYQSQSKTASNLATRSTE
>Copia-10_BG#LTR/Copia 169-5115 56.4% sim to Copia-108_AA, SW:1076, [Blumeria graminis]
MESGAPMNLFPVLNRDNHEQWFRRMKLRLEGKDIFYTAEMSLEAYAWTGMLSEAKFSKNGDTERPRAEKLEGKWDIEKKA
EFKKDQAKFLSTLADYLIEDDQKIIDEFGTAIEVWARLKSKYQKISVTAANKYLTQIQNFHFNENDGIEASWTRIKGLCN
KLIAANISMRNAYPDDGLLIVLMNKLPELYSPTIDGLHLQENLTAKEKIQRLVDKEDRSKESANIATRRKTSSPQRRRYS
DISMKDSLNDPISPSQMCFLCKGGHFQRYCPFVAEIQKFGEQLRIRQERQDTSKSQKPSKGPQYYKKKGNSNPTFWGKKS
KGYSAQGSEPMHQTINHDGSDTMEWRVNSSAPHQIDERLHLSKELICKSVPAEWVFDTGATLPMTDQIHLFRGPLQKTRQ
VTIQVGGGELYSNQRGKALVLCRDGSSVLLKDTLYVPNLGVNLVSAKQLCRQGMNGFFNENEMHIMKNNKRVINAKQSKG
LYIITHISSDFHGKALAAKSTFNPAMEGIHDCYDNDGEEIASEPDPDDSEPEGAKSKADRHLYRLMHRRFGHYGPKLIGN
LHKVSTLEKKIPIPPPEGRICKSCKVAKMRNSISKCLAKHRSEALELISLDIAGPFPKSLRGNRIFLQIVDSFTRKIWSI
PLPSKSSAISALRNLRTKVELETGKKVKAARSDNAPELKLVLSHWEKEEGISAEFTTIASSHQNGTAERSIQTAENAMRS
MLHSQDLPLEFWDEAVEFDAYVRNRLPVGPIIKGEITCPEQAYTGKKPDIKNVRVWGSKCYDYVNPKTLPANSRHDKLVL
RGREGVFMGPVECTTKQYKVYAPDLGYTRRTSTLYVDEKTKGGTVRLQIRDNPSGTQGTSNVFVERKTRGRPRKDNPLEI
SPKPQVHDDISVTVPAAEADEAKIQVLNQVERAKSPNLDIPDENTENEIKQGCLSNNIVKTKHSAILEKADNKKRPLSSV
ISMPENSSINCSLVKSQNIEEIGDVDQALYPEDMMGVELFTDPILISNSGNTIVNQANMSQDEVHERNFSSDIDEMLDDQ
VLSDIHESITPAISNSLSESNLKLRYFFRKRKEKFGNENDREAKRIKAMIAMILGYNLQSHKIHSAYSANEVIGIKIPKS
YNDAVHDPIHATEWIAAIKEELHALESNGTWIECTPPKGANLVSTRWVFTIKTHPDGSLERFKARLVARGFSQQYGSDYT
ETFAPTVRMDTLRIFLAIVAKRNMDCWHFDIKNAFTESNVKEEIYLSAPQGIVIERGKALRALKSLYGLKQASRDWNQLL
KQFLVECKFSQSRADPCLYVNAKMEIWLLVYVDDIAAASYHATSLEWFYEKLSYRFNAKNLGETSKILGVRITRERKTRT
IYLDQKQYISRVLDRFGITKENHKPKLIPVVDYEHLRPGKEKDESIDPNEFSQAIGSLMYAMIFTRPDIAFVLGKLSQFM
KAPVNHHGYALKNLMRYLKSTIKQKLRFGPESNHAKNFTIYTDADWASDKVDRKSISGGVGMFYGGPFSWASKKQNSVST
STAESEYISQAMYAKQGQWAALVFKDMLFPEYISPNRKTVQMFGDNQGALALVKNPYLHERSKHIDIRYHFIRHLAENKR
LQVHYISTSQMVADGMTKPLTRIAFQRFKRQIGLLDIDRKIEETTCSEG
>Copia-14_BG#LTR/Copia 484-5178 via tfasty with Copia-57_Mad, 49.7% SW:859, 8 stopcodons. [Blumeria graminis]
MVCDNKIVLAPGVSFVSWENDLQAKLARRKVLGHVFHNIEGIKPISKPTPPTSFESQKPSTEMCHDLVNDYEEKLAVWRY
GEIEAQNIILQRLDEKIRPRHYRHCTAKQLFDEVANTHQQSATTPYSVALRALHNTKMGDNAESYCNEFIKNLHDVNNAA
ELMIETPQTSTEKTENEFAVLKGYAAAMFVEGTMEVKWLSNWRETRAYTDGKKYAKLEDMMSTLRVAVEQRSLRSNPVVA
SVSNNNRMEPGPDDPCRRCRHKHLNKGLFLATSxTSAIxKGSRxERKGxDCMSRRIKxxGRNxxKTNSSQHLNSNEKRLL
YDTGASHHFVPNKNKFINLKKYSKSFKFDQAVGSSSLTHYGTACLIIGKKRYELHDAVYSPRSACTILSAGRLQRLANIV
PDPENKMLVQKKIGKPDIKIARLIRKNDVYYVRPLNENNSPKEQNNVVAPGVSRIPNAIGAQRWHERLGHVGQKILKKTV
DCSVGLQSINFSDLSTCETCHLSKTQRFISRDQRITPNKPLDEIFVHTIGKLTAAVHGEQYAVIITDAKTRMRWALNTHA
KDQIASLLIQWIEDQKHQYDKRVKIIFRDGGSEFMRTKSYCEQHGIRTGISAPDTPEPNGASEAANKVVLTMARSMLIDA
RMPSCYWPWAIKHACFIVNRLYCLRTKMVPLIDLLQGLNQPAPEKIDFSNMPRFGCRAYKYIDPKPGKFSPRAETGWFVG
FQANTNKNFIIFHPHWTPIQGWKWIESFSPHVTFNEDVMFGDRLHLAAQQSASNFWSNRTSSFFDRSEEPSESSSSTSTD
IQTDQQFEREHCREEVSQSIETDDDLPQVPTPRDLSIDSEMGNNTTNEGHVPSQIHPQEQREPTLEDQAKLFPRQERVIN
PQDQGEKFQEEQREYTLAENLEPYSQHEAETNRQTQIGQDMTEQSQFQEEIQNHNDFTNENEELAYDFNMTGWDPIPPIA
GQKRSHSPDSNIHQGPSKNRVVSQPDHEIINEETPYDVIMTGWEPVAPKAGHKRDRSPEVEIMQTKRGRKVKKHDYYRMH
HGMSAITSSDPKTWQEAMTSPEAKQWMKAAQEEFSSLKEKGAIKIINRNKLPQGRHPMKCKWVFKKKFLGDGTIDKWKAR
CTAKGFTQRYGIDYQETFAPTPRSETGRIMLVLAHQCNWHRRQGDVPTAFLNPDLNIDLYMEMPQGFEKKNHIILLRKGL
YGLKQAAALWYDDAKATLAAQGLYPTTSDVCLYTTKQKDLFVLLHVDDFQVMGPNLTKIEKLISALYKKYKLKMVNTDLF
LGINISKPSKNVLELSQGQYARLILDRHGLTDCKPAKTPLERLMEPSTSECSPGFQKEYNSIVGGLQYLANNTRPDIAHA
VNHLARFLSNPSEEHFEAAKRVLRYISNSPDKGINFTKRDNMKPILEAYSDADFAADPSSSRSTSGSLINLGSGPVCWRS
HLQREVVLSTTEAEYLAATETCRQLQWVKSLLEELNLLGMIEGSKLTNLYVDNQSAISLIKNHDNHRRSKHIALRNFFCR
DQHQSGKVNVIYVQSSEQLADSLTKPKSTVPLYGSIKSKDWKTSQ
>Copia-17_ST#LTR/Copia 79-4518 via tfasty with Copia-74_ST, 69.8% SW:3239, 5 frameshifts and 3 stopcodons. [Solanum tuberosum]
MSTSVSSDSTIGAVSSTQNNGALDAAHPYYIHPSDYPGMNPVSTIFDGKGYGGWRRVVVIALSAKNKLGFTDGSLLVPTD
PILQKSWARCNDTVLSWLLNSLSKEIAESVLYSNSAKDLWKDLEERFGQPNGQAFQLQKELGALVQGNSSVSGYFTKMKS
LWDELNALNTFSACICNCECGAKIKNLKAHQDERLLQFLMGLNEIFIGVRNNILISSPLPSIGQAYSLVMQDEKQREINS
SPVYLADSAFFTAANQPPGNRKSGEYKGQKGIYTPKKNTYICNYCKKVGHNISQCYKIHGFPPDFKFTKGKMTQTAALAS
SRVDPEQARPNVADPLNLTQENIRHLLSLLQQFKQGGNIYEDMTTANCASIANFFNFYACFAHTDDSWIIDSGASEHMSF
NKSFLSNLKPLPRSVMITLPNSHKVRVTHYGSVSLFPNIVLEHVLYIPSFRFNLLSVNKLSQQLSHSVLFTSTSCFLQGP
SLKSPLEIGKAAGGLYIAKPSLAIFPSKSSTKLRKNLVTGKSNAINSLPALVSSFSLFNSNVKENLWHYRLGHMPLSNMK
FFFSIPITSKSNFIVLCEICSMARQHKLPFPSSCISTKSVFELIHMDTWGPYKHHTSDGFKYFLTIVDDFSRGTWTHLLT
NKSNAFTVLKSFLNMVERQFNVKVKTIRIDNAFELGSGKVHSAYFSAKGIIHQTTCVSCPQQNGVVERKQKHLLETSRAL
LFQSNLPIKFWGDCLLTTTYLINRFPSKVLSYKTPYELLFHTVPTYTNLKSFGCLCFASTLSTHRTKFDPRSVSCVFLGY
PHGKKGYKLLNLKTMRSFVSRDVVFHELFSHFSSIKPTFQIPFLPQLSSPHHMDQSLEVPPSITPTLPLTDPPIPSPKSV
SLDTPSSPTSASHNPSHFHPAPSSDSMLDTLIRKSSRSHTAPSYLKDYICNALQLTDLTASCFLSPVTPSHFSFTALSSS
NQHLLNTLSHLHEPISYTQAVLHPGWQDAMAKKMTALELNNTWDVVELPPGKKALPNKxVYKVKHHSDGSVERLKARLVI
RGDIQREVIDFTEIFSPVVKMTTVRCILSITFKKSWGLFQLDVDNAFLHGDLEEEVYMMFPAVVTSPSSNHVCLLKKSLY
GLRQASRQWCAKLTTALTFKGYTLSLNDYCLFYKKTDSSVSIVAIYVDDILMTGNDMNELNNLKAFLHNEFRIKDLGSLH
YFFGMEVLRESHGLILSQRKFTLDLPEEFHSSHLTPVSSPLDPFTKLLAKTGDSIPDPTLYRHLLGKLNYLTHTxPDLAF
TVQYLSQFMQDPRLPHMQAALRVLRYLLRDPSLGLFMSSTPDFKLLAFCDADxASCPNSRKSVSGFYISLGSSPISWKSK
KQTSISLSSAEAEYRSMRRVVGELTWLVRLFSDLTIPIELPIPLFSDSQAAIHIAKNPIFHERTKHVELDCHFVRQQFQA
GLISLSFVRSSSQLANLFTKPLTGTLHHTLLGQVAVLFPPP
>Copia-17_PIT#LTR/Copia 55-5024 via tfasty with Copia-42_BD, 54.5% SW:1041, 3 frameshifts and 3 stopcodons. [Phytophthora infestans]
MSGPLKYTNDGVPKNWDGKDWQQYKWAMEIVFKKKKLTDIVNGNLTKMMLFTSEAEEEFDDHQLTIMQLIGMSLPAEIFH
QIRDKSTGTDMWKALCVIYESRENRTTMAHRAESIRHELDMLKQSTGGDVNKHLSTMFNLRTELLSLNYQFDDTAMVEFM
LNSLPHTYEFESLKSGVRYNCADTYITPERTRELIRVADSRQRVFQAKSGKRSQKSGSIEKQKADGNGQNREKPEKFKDT
KKKVKKCFVCDSTEHLISECSQKMKNQDGARAAGSEQKKKARANVTRMGHNEPLGSDTEEVHASEEVTDALDALLIDARL
PAENSEENEAGSNMKKRPRGNEADATVSCWYDGLEHDEHEVDTSSGWWYFDTAANVHVTGNPWYYVAFTPDLNQSQHVLG
VTPALASRVAGVGTVQLITEVEGERKAVYLSDVFYIPGATHGLLSVGLATEQGFDFDYHGQLRCFCVKMNTTILxLLQHR
RMELGDFKxAIHPEMDLLVHRIEPLCNFTAAEGVASLKLWHERxGHVCPQYLKTMVDKNLVRGMMLRQRELGACDACHIG
KQKQRRHWKKLDRNTKAPNQMVYADLLIPSKANGTRFEAVLVLMDGSRFVKVHMLTSKSSEVVNQHMKEYVLWAERQAGR
QQDGPIRVKYRVHQILTDKGGEFVNTVMDNWYGVHGIEHVKVGPKSSQLSLCERTHQSLVEMTKSMMHDAGFPVSLWPEA
LRNAVYIKNRTYNKGTQSIPYEMMFGIKPDLHHIRKFGSLAYVHVPVTPGRKKHHDNARLGFVLGYAEDTVGCKVYFPDD
RTAKFVSDLRISEDVMYRDRHGADLEEDDLESLYFTKRSNMESSTENSTLESTMDLSEVCNSNAAPMMSEVTLEATRDLE
EGEDDTAQRVEERDEVMTELREAQQASLSSRASANWTGLEAIGDTVTEPPCVPDVEGVTAGLPSALTALQSEQYHNQSDD
LIQSDGVNSEGSASKLTTVYGYTKPDMTSDNEYAVSVCGSLDVNADGSSSEVDTEELHADENLSESIVNEANLVADEDGD
MLVDVDEKFSEDADNVTIASTCEKLVCKRQRDETNSEMGRVEICAEREGPKRARTGLREYHERRRPKYLDAYVVNAVENT
SRVLDENERPIRASDVRIPRNHREAMRSKYSKYWREAELAEMSAMKRRRVLEEIAFEDVPKDAKPIKTHWVYSVKSDFQG
FVIRFKARLVALGNYQRPGVDFIDTFSPVARMSSFRLLVSLAAALNLKLYGGDVDTAYLNALLGILQYVKSIDGFPCEVN
GHMYVVTKALYGLRQSGREWNSEINQWLLTRGYQRSLTEPCLYYRIDGEDVILVLVYVDDIVVATKDEKSKNIFFEDLDQ
EYGLKDQGLLIVYLGVEVNQTEEQITITQTKYTHEILEKFGYGEAHAVGNPMEVKARFVPLEEGETSDTSFPYREAVGML
MYLATSTRPDLAFALSRLSRFVANPSSKHVGALKRVLRYLTGTVNYGITYDRQEIKSKAIVLEGHCDSDWANDPETRKST
TGFVFTLAGGAISWMSRRQSIVALSTAEAEYVAACETAMEAIAESNILQEILPHHTVELRIGIDNQAAHVLATNPTYSRR
TRHIELRWHYVREQVERGVLNLHKIKGDENPADTFTKALDKLRLKNLIASVGIGDAK
>Copia-18_EPa#LTR/Copia 89-4149 via tfasty with Copia18-PTR, 81.8% SW:3937, 1 frameshift and 4 stopcodons. [Eutrema parvulum]
MIDDKMKLPQFEGHWDHWSEVMENFFKTKGLWSLLETGFEEPANTVILTAEQRTQLDNAKKNDHKVKHYLYQSIDRVTIE
QIQDRRSSKMIWESMKKKFGGNERVKKSLLHKLGRDFEILEMNESEKVEEYFKRVLTITNQMRSNGESMSESKVVEKILR
TLSEKFMYMVVSIEESKDVENISLDELQSSLMVHEQKFKRSEKKDDQVLKVTYGTQGRGTNSRGRGRGGRGGRSFPDKST
IECYKCHKLGHFRNECPKWDEEANYADFEEREEMLLMAYTEEGERPANLQEKSEFLLMTYSEKRENQKKRAWFLDSGCSN
HMSGDRELFSSLKDSFKHSVKLGNDKRMEVIGKGSVRLVLNDIVYTISDVYYVPELKNNLLCLCQFQEKELTIIIRKRTC
KIYHDDKGLIAESKMSINRMFMLINEGDKGGETKQQCLQTVSEDLAKLWHERYGHLSHRGMKTLQSKNMVRGLPLFDTQT
FTCSDCLVGKQPRSSIPKQSTWRAKEVLELLHSDICGPISPTTTSGKMYILTFIDEYSRKSWVYFxTEKSEAFDSFKLFK
KKVEIEKGKNIKGLRTDRGGEYTSHEFSKYCKEHGIRRQMTTAYTPQQNGIAERKNRTVINMVRSMLSARKMPKIFWAEA
VSWTFYVLNRCPTLAVKNITSQEAWSGMKPTVKLFKVWGSIAHAHIPDEKRSKLDDKSIACILLGFSEESKGYRLYNPRT
KKVIVSRDVVFEETREWNREEDQRQESSELTWNDDDDSMGRKxSRRIDDEAEPATEVEEPAEAQPAEAQSPPTEQQAIVR
EGRIKRTPRYLSDYIVGVEIEDEEDEVNMMEINSSDPSAFEEAAKDSKWREAMNEEIKSIEKNQTWELTTLPKxAKCIGV
KWIYKTKLNELGEVTKFKARxVAKGYCQEHGIDYNEVYAPVARMDTIRIIISTAANKTWNIYQLDVKSAFLHGVLMEDVY
IQQPKGYVIKRGEEKIYKLQKALYGLKQAPRTWFSRIEDYFVKEGFKKSQNEETLFFKSNKHGNILLVSVYVDDLIYTGD
NVSMMEEFKKLMQREFDMTDLGKMRYFLGIEVLQTTRGIHISQGKYALEVLKRFNMEDCNAVYNPMVPGSKLDMDEEGER
LDETFYKQIIGSLMYITTTRPDLQFAVSLLSRYMAKPTQLHLQAVKRVLRYLKGTMDFGIWYKREGNGEILVYTDSDFAG
DIESRKSTTGYAFLMDNAAVAWLSKKQPIITLSTTEAEYVAVSVCACQAIWFKRILKELGYDGEESTIILCDNTSTIKLS
KNPVFHGRCKHIGIRFHFLRDLVKEGTIRLEHCGSSDQVADIFTKALTRDVFEGLRSKLGICSVADKLSFENQA
>Copia-18_SI#LTR/Copia 130-4149 via tfasty with Copia-24_SI, 66.5% SW:1873, 2 frameshifts and 2 stopcodons. [Solenopsis invicta]
MADEIFSRDIRVTKLSKTTYSRWKIEIRDALESHRIWEIANGNVNQPQEVSEAGVVKNKKEIEDWKAKDSKARSIIRSTL
DDTTFDQVCDCESSENILKRIKAVYEPKTLNVLLELLREFFVYSWKSDSTVQFVAGLKVIIRRIEALESEDFGRNFNEKL
LMAKILGCLPKEFDNFVTSWSLLSEDTSLESFLEKLTNAERSITERSDDTSHEAFKIRPKSTNSQSKKTMNKRFPGKCHK
CGKIGHMKKDCWSKVEKQESSEEKKETKSQQNEVGLSASSVFKVNDDNKIIADSGASIHLTRNIEWFSSLRKLDTPLILS
VANGKTLQATHIGNITIEKSIDGKKWIKRIWENVYYAEDMSSESLFSTTFMEMTKGYSFYHGNGLMQLKDGRETILGGKR
IGNQYVPYIRVKPPSFHAKAAQSIGLWHQRLGHVSDKTIRAMCKNNLTDGLEVIFTKRDDCDSCHFGKQTINQHPTKEKR
DCLPGERFHSDVCHIGIMSWNKCKYFLTMKDEASGYRRVFFLKTKDEVSNILKQFFIDAERETGRKAISLRTDNGTKYVN
ENVKEVLKLRNIIHELSPPNVKQCNGMAERENRTLCDTARSLLFNTDLSRTDRHLLWTEASGTAAYLRNRIPNRGIMNTT
PYYEWYGKKPNISHLRIFGAKAFVRVPDTMRRKMDPKSRKTVFVGYDRLTDKIYRVFDPTRKVVERVSDVIIQDSSDENN
QVLFPLSSDKQVEDFEEPAIESSSSGNGEKEEKDDSEETIDNSYKEEVSSSDDYEEVRxHKxRFAENEKKRTASWLKEFS
EASSLNRRELRSGSNKLACIAAMKVSMDPTSYEDAISREDAHLWKKAMDEEMMSLTKNQVWKLEELPKDRPTVSCRWVFK
SKLKADGTIERYKARLVARGFNQTKGVDYFETFSPVVRYESVRTVMAIAAKYDMEMTQFDIKTAFLNGPLKERIYMQQPE
GYDDGTHRVCLLQKGIYGLKQASRNWNIFFNDFVMEYGLIQSDADPCIFTKDANTDNWMILCLYVDDGLIVCKSNKLLKD
FISSLRRKFEITCHEPSCYVGMDIKRDREMKTIYVNQQGYISRTLCRFGMQDCKPVTSPMDSSVKLMEQKNEEDIIGKRF
PYREAVGSLNYIALISRPDISYAVNTLARFSNNPSEVHWRAIKHVMKYLKGTIGFSLCYKGKSEDKLVGYCDSDYAGDLV
SRRSTSGYVFMLHDAPISWSSNLQRVTALSSTEAEYMSISEALKELLWLRSLLESFGLKQAGKTELRVDNQAAIAMSKNL
EFHKRTKHIEIRFHRIRQEQEAGNVDVTYVPSNKQVADLLSKGLTWAKISEYLEILKMTS
>Copia-18_SB#LTR/Copia 1445-5602 [Sorghum bicolor]
MHFISAIPKLTGQNYVLWREELDAALALAEIDLALQEPKPTEPEEPERAQNETDEAFANRKRDFAPIRAKYDLEKYKWEK
SNRKCKIVIKKTITEGLRGAIPECDTAKEYLEKVKNQFTGSTKAHASTLIQKLTNMRFTGGSVREHILSMSTMAAKLEKL
KMPLADGFLIHLALNSLPKEYETFVVNYNTQPEEWDLEKVIAMCVQEEERLKNANGGSVNFVKGKNKKPFYNKKAPDAST
SQNKGGSTSQPKAHPKQDNQHRQEDPDRCRWCNETGHWKHDCPKFMKHCLVKGEDIITFVDESLYLSYARSTWWIDSGAT
VHVANSLQGFSGGRTLQRGERQIKVATGVEAEVQAIGNLSLDLASGFTLELHDVLYVPSLARNLISVSCLSDYGFDCHFS
KNDCKLQLNNKCVGLAFRQDKLYLLSLSENVNAECNNVENAIPADASKKRKRIDSSSKLWHCRLGHISRGRIERLVKESI
LPPLELSELEQCVDCIKGKLVKNIKKGAKRSMGVLELIHTDICGPFPVTSVDGFDSFITFTDDYSRFGYIYPIKERSEAL
DKFKIFKAEVENQLDRKIKVVRSDRGGEYYGRHTPYGQVPGPFARFLQENGIVAQYSMPGDPQQNGVAERRNRTLMDMVR
SMMSYSTLPLSLWMEALKTAIHILNRVPSKSVLKTPYELWTGRKPSVNHLRVWGSPAEAKVFNPNIGKLDPKTVSCHFIG
YPEKSKGYRFYCPGRHTKFVETRHASFLEDQMIRGSKAAREINLEEKRVFVPIPMVQEPYFTLPVVVGSTPVVTTPAAFS
PMANLEPVPQEPNEPIVEEQQPQQEQPQEEMPVAETSGRPQRARKSPIPDDYIVYECEEVQMEDEPTSFEEAMRSTEASK
WQEAMEDELKSMSTNKVWDLENIPEGAKTVGCKWVYKVKRDSKGNIERYKARLVAKGFTQREGIDYNETFSPVSSKDSFR
IIMALVAHFDLELHQMDVKTAFLNGDLEERVYMAQPKGFVVTGKERMGCRPKKSIYGLKQASRQWYLKFDKTIRKFGFKE
NVEDNCVYAKFKNGKYIFLVLYVDDILLASSDVTLMQETKRFLSSNFDMKDLGEASFVLGIKIHRDRSRGVLGLSQEAYI
EKILKKFNMHKCRPSPAPIVKGDKYGEHQCPKSKFERDRMQAVPYASAVGSLQYAQVCTRPDLAFVTGLLGRYQSNPGME
HWNLVKKVLRYLQGTKGLMLTYRRTDDLQIVGYSDSDYAGDDRKSTSGYIFTLAQGAISWKSSKQTIVTASSTMYAEFIA
CYEASGQVNWLKKFIPSLKVVDSIDKPLKLYCDNEPAVLYAHNNKSSNAAKHIDIKYYVVKDKIRDHVISLEHISTEKML
ADPLTKGLPPNVFREHVAGMGLRESL
>Copia-17_GM#LTR/Copia 42-3992 via tfasty with COP7_MT, 88.2% SW:4621, 1 stopcodon. [Glycine max]
MGTTKYDIEKFSRENDFGLWRIKMEAILIQHGCAEALKGEERMSESLSSKEKSKMIAKARSAIILCLGDKALREVAREKT
VASMWLKLESLYMTKSLANRLCLKQQLYTFKMTESKTATKQLVDFNKILDDLENIEVKLEEEDKTLLLLNSLPKSFEYFK
DAILYGKDQDITLEEVQTSIRTKEMQKQQASKFEDNGESLNISRGRSEKKGTRGKKSRSRSRDSKNGQKTKFKCFNCHKT
GHFKKDCPDKIKKGSLDSSDIVEASEGYESAGVLVASNTKTQTEWIMESGCSYNSSPRKDYFETFELKPAGAVLLGDNYP
YKVQGIGTVRLKMFDNREYLLKNVRYILELKRNLISINMFDDLGYSTRILNGVLKISNGSLIIAKGNKNKSNGLFILEGS
TIVGHASVASNTLIDKTKLWHLRLGHVSERGLHELEKQNFLGGDKLDKLEFCDHCVLDKSHRISFGTGIHVSSRPFEYVH
SDLWGPSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSEAFQKFREWHTFVGNQLGTKLKVLRTDNGLEFVSEQFNEFCR
KIGIKRHKTVPHTPQQNGLAERMNRTILERVRCMLLSAGLPKTFWGEVANTIAYLINRCLSSALDFKTPMEAWSGEPPDY
SGLKVFGSVALAHVKQGKLDARAVKCVFIGYPEGVKGYKLWKLELGETRCIISRDVTFDESKMAMLSKEQKNNSSSSENT
NFEVEHSEISDHDSGNVIDHFDQAEVGDNEELATQHDLSNYQLTRDREKRVIKPPKRYGHADIICYALSVAEEIQNSEPK
TWRETIESEDSQLWLQAISEEMESLRKNKTWILVDQPKKQKAVGCKWIFKKKEGIPGVERPRFKARLVAKGFTRVEGIDY
NEIFSPVVKHCSIRIILGLVNQYDLELEQLDVKTAFLHGNLKETIYMNQPEGFKEGENKVCLLKKSLYGLKQSPRMWYLE
FDEFLIRYGFIRNKxDNCVYILKNGKVCVLYLLLYVDDILIASADKEEIRKLKENLNTEFEMKDLESVRRILGIDIHRDR
AKGELFLSQSNYLKKVVERFRIHLSKPVSTPLGHHTKLSVIQAPETAEERSKMDQTPYANDIGSIMYGMVCSRPDLAHAV
SIISRFMGDPGSAHWEAVKWPLRYLNGSLKAGLRYKKTAHEAAITGYVDADFAGNVDTRKSLTGYVFTLFGTTISWKANQ
QSVVALSTTKAEYMALAEGVKEAIWLKGMINELGITQACVTIHCDSQSAIHLANHQMYHERTKHIDVKLHFIRDVIESEK
VKVEKVSTEENPTDMFTKSFSSVKFKHCLDLINFEDA
>Copia-14_ST#LTR/Copia 48-4001  [Solanum tuberosum]
MSDDKTLTKIPKFDGHYDHWSELMENLLRAKGLWSLVEEGYDEPAEGVEMTAAKKKSLDEIKMKDHQVKHYLFQAIDWVV
FEQILNCKTSKIIWDSMKKKFGGNERVKRSLLQTLRRDFEVLEMKNEESIDDYFGRVMSVSNKMRSNGEDMTDSKIVEKI
LRTLTDKFTYVVVSIEESKDTERMTIDELQSSLSVHEKKFKKISHEEDDQALNVRGRGRGSYRGRGRGRGRSFNKATIEC
YNCHNLGHFQYECPNGNSGANFAEIEEKDEVLLMTYVELQGARRRDVWFVDSGCSNHMCGERGMFSSLDTSFTHNVKLGN
NHKLMVGGKGVVKIMLKGINYVINDVYYIPELKNNLLSVGQLQERGLDVLFKGGDRNTCSIFHPSRGKIAESVMSANRMF
ILLGESNDKTKEEKCLQVDISDKAELWHHRYGHLSYKGLHTLCSKEMVVGLPEIGDVKTTCEACVKGKHHRVPFPKQSKW
RATERLQLIHSDLCGPINPPSNSQIRYLISFIDDFSRKTWIYFVLEKSKAFHQFKTFKAFVEKQTGLFIKCLRTDRGGEY
NSNEFKEFCREHGIKRQLTTAFTPQQNGVAERKNRTIMNMVRAALLEKEVPRVFWPDAVQWVNHVLNRSPTLIVRDMTPE
EAWSGRKPSVEHFRVFGCIGYVHIPDVKRSKLDDKSVKCVLLGFSSESKAFKMFDPVEKRIHISRDVIFEEDKKWNWEAV
GYSGEESIELEWENNYESVEEAEETEEYTDDVPSPNNPSTGETITTTGRVRKPPIWSADYITGEGLSDIEEEVNMARVET
ETLAFMIISDPTSFQEAIRHQSWKQAMDAEIQSIERNHTWSLTTLPVGAKAIGVKWIYKTKLNELGEIDKFKARLVVKGY
AQEYGVDYTEVFAPVARMDTVRMIIAVAAQRGWGIYQLDVKSAFLHGELKEDVFVEQPQGYEVAGKKDMVYKLHKALYGL
KQAPRAWFSRIEAYIVKEGFVSSSSEQTLFIKQKGGKIIIVSIYVDDLLFTSNDEELLNEFKRSMKDEFDMTDLGKMRYF
LGIEVIQKADGIFICQRKYAAELIERFGMQNYNFVCNPIVPGQKVGRDEAGVKVDSTLYKQMMGSLMYLTATRPDLMFVV
SLISRFMANPTELHFGTAKRIMRYVKGTLEFGIWYQREGKSELLGYTDSDYAGDVDDSRSTSGYVFLMSGGAVAWSSRKQ
PIVTLSTTEAEYVAAATCACQAIWMKRILKEIGHEQDEEMVLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELANEGV
VKLVYCSTEEQLADIMTKPLKMASFQRIREAFGMKIVN
>Copia-14_PIT#LTR/Copia 5-5017 62.0% sim to Copia-25_CQ, SW:1262, [Phytophthora infestans]
MSPRRRAGSPVRSTQSSRASDELQLPARADETTSDETHATSQASSTRVEQQLELLLAQFGTVMTTLTNQQQVQNIPVEAS
TRRPQRQLIQEFSAARAQPQRVPTPYGPRRGNPSTEELTADASTRQSEPPRNPRTSEAAAQPVQTEAGTDSATDEPMVGD
HRCTRCMNQSGHVQLNARLTDTNYQTWRVEICSILDVAHLLDPIMERETMADQRNEGQRGCFKQRLGVAQRELTMGLSQE
LQMRFTSVIQRADPILLWRTLEDHFDNHPGVNSVFLKRDMLNRRLQRDERLDDYIRDIDDYQQRLRRANKQLPEQEAVSI
LLSNTVGVYPAVVNEHEVRIGRDESITWEQAIERLRLADHSRQETELQQGRGGGGRAVQRDVAFVGGRGDGHNDGRGRRN
SSSSQARGNNNRNNRRSRSSSPRGRNKRQKSKSSSSARDDIAKRKAKTKCNTCGEQGHWSGDPECRQRGNNNNNNNSSNP
PRRMIDVVTVKTAKSAAPTQAEGQEHVLAVRDNFNYKDKDKDQDMVEWVLDSGAQTNVSSDLTLFTELHEDSVAELVFGN
GTTERATVGTVLMQVLNEHTGKIEERLLDDVSYAKSAAYNLISQTYMQFKGNFKVRISHDQKTTWLVKDTLKLRFKYIRG
MYRMWTPRQSKNVMSVKASEAENPMTLLHNRMGHVNMETIKTMAGTYNFGINMQSKNFALYECIPCLESKTKRMSYKRKP
SRSAKPLHKLCVDLCSVGVDTISKSNQFLLIIDEATRYKWGYLLAYKDEATELIQKQIRWIQNQFPKATIKTLFSDGGGE
FVNMQLETFCKDLGIDTRSSNPYSPQENAIVERTNQTVMRQVRSMLQATQMPVSLWGEAFLHAIETLNKTPTPVLKDQQS
PYEALYGERPDLSVLRTWGCLVHAHIPDDSRQRKEKLTPRTQMCLLLGYSEKTKGYKLLNLRTGSVTTCRDGNMKAHEKY
TVNTVYIEQLLANTYAYGDYDLPAEIPIVPIRTTMSTYLQLPAELAEKRAAEMAKLATAGKSQDQGVEVEAESATRSDDP
QLPSEDAKKPAASVGGSKRKNTKGKNKAKACANRVGASKAKDSRRDAHEDESWEPCTTQKSSPDDSAATSRPKRKRQPSA
RLKDYVVTNVTKQNVEDVQIPISHKHAARSKKWKEWKAAMQVEMDSQQQHETWVLVRRTEAKGKRVISCKWVYALKRDST
GRIKRYKARLVIRGFLQRMGIDYSETYAPVIRFETIRCVIVYALQRGWAILQFDVKTAFLYGDLDEEVYMEQPPGFGEDS
TRYVCKLQKSLYGLKQAPRVWNKTLHKFLTKIGLERLDSDYGLYARKVGGEVTMLLTVYVDDLLLLGPNDLCAKVAMQLS
EEYELTSLGPVKYLLGVEILIDSERRHAVFCQRQHITEVLKRFHMEGCNAVATPEALRAEVVTDAKDDSPPPYRELVGAL
QYLVSASRPDIAHAVRNLSKYLSCFDHTHYAMGKRVLRYLSGTQDHGLVMDIVIWNDVKLTCYTDADYANDPDDRKSVSG
FVTFVNGNVVSYGSRKQEINAQSTTEAEYIAMNEGTRDLQWLRGLCEELCWEFATPEIIGDNKSCIYLTAKPGKHSKNKH
IMNKFHLVRHLVENEQLRIRHVGTDDMIADAMTKPLPKDKFEHCRDGMKVLRIDRQQGSARSVGAKHHRHA
>Copia-15_SB#LTR/Copia 103-3936 via tfasty with Copia-39_ZM, 1 stopcodon. [Sorghum bicolor]
MILWLTAMSCYDVAKGKPEQFTPEEEKTFMAADNLFRGAVVSALDKKYVDNYIICTTAKELWDALEAKFGVSDAGSELYL
MEQLFDYKMVDSRSVIEQAHEMQALAKELEQFPCVLPEKFVAGGIIAKLPPSWKDFATSLKHQRKEFGLAELMGTLDVEE
KARAKDTHGKGVESSSANVVQKKKQFAFRNKKKNKQENKQGANPKPKQTATFKKKKAEGGCFVCGSDDHWASGCPDRKFK
REEKKSVNMVIGEAKxGTSGYGNYLPTVLSVCHSPEWWMDTGANVHVCADISLFSSYQAGNTGALLMGNGSHARVLGIGT
VILKFTSGKMVLMKNVQHVPSIKKNLVSGSQLCRDGYKIVFEANKVILSKFGTFIGKGYDCGGLFRLSMHDVCNKIVNHT
VISNESNIWHSRFCHVNYGCLTRLANMNLIPKFNLVKGSKCHVCVQSKQPRKPHKAAEARNLAPLELIHSDLCEMNGELT
KGGKRYFITFIDDCTRFCHVYLLKTKDEALQYFKAYKAEVENQLERKIKRLRSDHGGEYFSSDFSDFCVEHGIIHERTPP
YSPQSNGIAERKNRTLTEMVNAMLETSGRSKEWWGEAILTASHVLNRVPTKNKEIIPFEEWEKKRVNVSYLRTWGCLAKV
NVPINKKRKLGPKTVDCIFLGYATHSIGYRFLIINSGVPDMHVGTIMESRDATFFESEFPMKSTPNISSHESINSHEQFI
PIEQSEEPHIHYPEEDDNVVTRTSKRQRKVKSFGDDYIVYLVDDTPTTIKEAFSSPDADLWKEAIRNEMDSIMSNGTWEV
VEQPYGCKPIGCKWVFKKKLRPDGTIERYKGRLVAKGYTQREGEDFFDHNSPVARLTTIRVLLSLAASHGLLIHQMDVKT
AFLNGELEEEIYMDQPDGFVTSGEKGKVCKLLKSLYGLKQAPKQWHEKFDRTLTSAGFAVNEADRCVYYRFGGGEGVILC
LYVDDILIFGTSLVVIKEVKDFLSNNFEVKDLGEADVILNIKLSREGNGGITLVQSHYVKKILSRFGYSDCQSAPTPYDP
SVLLRKNRRIARDQLRFSQIIGSLMYLASATRPDISFAVSKLSRFVSNPRDIHWQALERVMRYLKGTVSYGIHYTGYPKV
LEGYCDANWISDADVLKATSGYVFLLGGGAVSWKSCKQTILTKSTMEAELTALDTAGAEAEWLRELLMDLPVVEKPVPAI
SMNCDNQTVITKVNSSKDNMKSTRHVKRRLKTVRKLRNSGVIALDYVHTSKNLADQFTKGLSRNVIDSASSEMGLRPT
>Copia-17_CQ#LTR/Copia 120-4216 via tfasty with Copia1_AG, 1 frameshift. [Culex quinquefasciatus]
MADDKIEKLNDQNFEIWKFRMELKLTKEKLIKVVLEPKPRLKPVAGSGQTERRETRRMLQRRGFQRCSAAEMAAWLEKDG
EARHAIGMAVGNDQLVHICRKKTAKEMWDTLLGIHEVESMNTMMTVMRKMCSMKLPEDGNLPEHLKQLTAMHNRLEVADE
GLKPRQFVAVILSSLPMSYGTLINVIEGYPREQITVDFVKSKLRDEWRRRQECQEFQNGPSDEKALKISAKSGSRAKPKA
AELKKKKSGVCHFCQEEGHFIRDCPVMAEKRKEVMKSDAKKGSAKVNLAAEVHSEKEVCLMATTACETNRWYLDSGATSH
MTSDRAVLSNWNPAKQPEICLADGTKIVCSGTGSGKLVSVDEGGARVKVTLNDIIHVPSLAGNLLSVSKICDLGLKVLFD
RDGFEILRGQEAVLLGERHGGLYRLKQFVEKAMLAKPEHPQLCEHLWHRRLGHRDPDAISAIVREELGFGLQMKKCDVQC
VCGVCCEGKMSRLPFPKESLSKSQAVGDLVHSDLGGPMEVATPAGNRYFMTMLDDFSGYTMVYLLKAKSEAESKIREYFN
LVKNQFGRPPRVLRTDGGGEYSGSSLKKFLAESGTIHQMTAPYSPQQNGKAERKNRYAVEMVRCMLAESGLGKQYWGEAI
TAANYLQNRLPSSSVEKTPHELWYNKKPSYSHIRIFGSEAFVHVPKEKRLKLDMKAEKMVFVGYAEGRKAYRFLDPDTNR
IVISRDAKFIEQDGVTELQRNRPEPAEKADAVEMVQLPSYSAGRNEGSTSREVQTEPVAEVDEPETTDTEEPEDTASEEQ
NESVYENASEGELSFHGFPLDEIARRSLRPNLGVPPRRLIEEIFVAREEEMEPRTLKEALSCDDSSEWKRAMLEELKSHA
TNGTWDLVELPAGRKPVGCRWVYKRKRNAAGEILKHKARLVAQGYCQKYGEDYDEVFAPVTKQTTLRALLAVASKKKLIL
KHFDVKTAYLYGKLEEELYMKQPAGFEKKGAEKLVCRLRRSIYGLKQSARCWNHRLHAVLVGMEFVQSGADPCLYTKDVD
GERTYILVYVDDILVGSAAETNIQEIYGCLKKEFEMTDLGDLNYFLGLEIHREDGKYSVSLEGYIERVAERFGLRDAKVA
KTPMDEAFVKVEPESVALQESTTYRSLVGALLYIAVCARPDIAVSTSLLGRRVASPTEADWTAAKRVVRYLKGTKHWRLH
YGDTEAGLVAYSDADWAGDLKTRKSTSGMVFLLAGGAISWASRLQNSVTLSSMESEFVALSEASQETVWLLHLLDDLGEA
PQKPVVVMEDNQSCIKFVGSERVTRRSKHIETRECYVKELCNDGVIELVYCPTEDMLADLLTKPLGAVKMAKLSSLLGSK
SGVGKR
>Copia-16_ST#LTR/Copia 123-4125 via tfasty with SHACOP21_MT, 78.1% SW:3313, 1 frameshift and 2 stopcodons. [Solanum tuberosum]
MAVNTNSNSQPLPIFKGVNYQFWSLKMKTLFKSQELWDLVEKGFPDPDEGHAQQLRENRRKDSNALFLIQQALHDDIFPR
ISVAETSNEAWEILQQEYMGDKKVIVVKLQTLRRDFETLSMKKGESVHDYMSRVSAIVNLMKSYGEKITDETVVAKVLRS
LTSKFEHVVAAIEESKNLADYSFDELMGSLLAHKDRLNRSHEKVEEKAFxVKEESSFSKEKSSNFSGRGRGRGGFRGRGR
VRSRGRGQFSESRQPKSDLQCWYYKKSGHSEAYCWTKQRDEQKHANFSEKVEEESKLFMVHSQTTDNSDGVWIIDSGCSN
HMSGTKSLFRDLDESRKSEVRLGDDKQVRVEGRGTIAIKTMQGNSKLICDVQFVPSLAYNLLSVGQLMVNGYSVLFDNDS
CIVSDKESGQTVAIVPMTQNNMFPLNVSNVVENSLVAKGVNETQLWHLRYGHLNINGLKLLTRKNMVIGLPKVGDLELCE
ACIFGKQSRKSFPVGKSWRASSCLELVHADLCGPMKIESLGGSRYFLLFTDDYSRMSWVYFLKFKSEAFENFKKFKALVE
KQSGYNIKALRTDRGGEFLSDDFNLFCDENGIRRELTSPYSPQQNGVAERKNRTVVEMARSLLNGRGLPVHFWGEAVAAA
VYLLNLSPTKAVLNQTPYEAWTGRKPRVSHLKVFGCIAYALVNIRSKLDEKSEKCIFIGYSPQPKAYRLYNPTSGKMIIN
RDVVFNEEAAWEWNGKKEDSVIHIPVQPEGEHTTSLGSIGLDPSSSSSSDSINSSHGGSSNNSTPIRSHSPSSTSSSETP
PNKFRSLEDINASCSFSLLAAEPTCYEEAVKQPEWQNAMTEELxSIEKNQTWVLVDFPERKNVIGLKWIFKVKYNADGSV
KRYKARLVAKGYSQKQGIDFEETFSPVARFETVRTTLALAAQLGWPVYQFDVKSAFLNGDLHEEVYVSQPEGFISSEGES
KVYRLKNALYGLKQAPRAWYSKIDTFFQEQQFRRSENEPTLYVKKRGNGEFLVVCLYVDDIIYMGSYESIVSEFKSCMMG
KFEMSDLGMLYYFLGLEVKQGSNGIFISQRKYATELLQKFNMLNCNPSPTPTNTNEKLVLDDGTGSVNASYFRSLVGGLN
YLSHTRPDIAFSVSLISRFMHSPSKQHLGAAKRILRYVAGTKVMGIWYSKVSDFRLIGFTDSDWAGNLENRRSTSGSVFS
LGSGAISWSSRKQDTIALSSSEAEYMAATSAGCQAIWLRKLLVDLQQEQIGSTEIWCDNKAAIAMTKNPAFHSRTKHIDI
RYHFIRNLVAGGIISLKFCGTNDQVADVLTKSLPRNKHEFFRLQMGVCDFEERG
>Copia-57_PT#LTR/Copia 63-4289 via tfasty with Copia-14_ST, 78.0% SW:3936, 3 stopcodons. [Populus trichocarpa]
MSDDKTLTKNPHFDGQHYDHWSELMENLLRAKGLWSLVENGIQEPIVGTALSNAQQTQLDDAKMKDHQVKHYLYQAIDRV
TFEQILDRRTSKIVWDSLKSKFGGNAKVKQSLLNTLRRDFEILQMKHSETIAEYFVRVTLVANQMRSNGETMPDTKVVEK
VLRTLTERFTYIVVSIEESKDVSAMTIDELQSSLVVHEAKFKRLDKEHNEEHALHVSIGDDRFHNAPRERRRPTYQSRGR
GRGRQGFGRATVKCFKCHKQGHFQYECLTWERNANYVELDDEEELLLMAHVEPMESADITTEDDEDAVTLDCVKENGGDV
ELDNGGNVALDCVTVNGGDVKLENDVLLLMAHSETKELTKEEVWFIDSGCSNHMTGNKKWFVTLDESFSHSVKLGNNARM
QVMGQGNVKLKVxGRTQIVSNVYYVPDLTNNLLSVGQLQERGLAVLMKKGVCKIFHPKKGLIVHTKMTTNRMFVMLAELH
NDACLQVIQEDITGLWHKRFGHLHLRGLQGLHHKKMVHGLPEIQAVHKVCEVRNKGKQHREGIPKKANWRASEKLQLIHS
DLCGPITPQTVSNRQYILTFTDDFSRKTWIYLLTEKSETFEKFKFFKTSVEMETGLKIRCLRSDRGGEYNSQIFSDFCNT
QGIKRQLTTSYTPQQNGVAERKNRTLMNMVRCLLVERKMPRSFWAEAAKWSVHIINRSPTAALQDATPEECWTGQKPSVA
HFRIFGCIAYVHVPNQRRVKLEEKSQKCVFLGVSEESKAYRLFDPESKQIITSRDVIFAEEEIWNWGRIDGDMEELKWED
AEPFADEEGNAGNDHAGNAQMENEQIQAQAEEASREASRADATxRANATSSSQTIRREQPKRISRAPAHLQDYVTGENLT
EEEEGDDQFLVLYTTADDPVSYDEAVKDIKWRQAMDAEIQAIEKNNTWELVELPKGMKKIGVKWVFKTKLNERGEVDKYK
ARLVVKGYAQRQGIDYSEVFSPVARWDTIRMILSLAALRSWEVFQLDVKSAFLHGELKEVVHIEQPEGYIRKGEEQKAYR
LRKALYGLKQAPRAWYSRIEDYFNGEGFEKCSYEHTLFIKKEGGSFLVVSLYVDDLIFTGNDIKLCREFKASMQSVFDVT
DLGRMKYFLGVEVHQTDAGIFLCQEKYAGELLTRFGMGSCNAVNNPMVPGTKLSSQEKGEEVNSTEYKQLIGSLMYITTT
RPDIMYAVSFLSRFMAAPKEGHLLAAKRILRYLKGTIDFGVFYKKGSNNILKGYTDSDFAGDLDGGKSTSGYVFMMGDGA
VAxSSRKQPIITLSTTEAEYVAATTCACHSIWMKEVLNNVEEDYCKCITVFCDNSSSIKLSKNPVLHGRTKHINVRFHFI
RDLIKKGEVELVYCGTKEQITDIMTKPLKLEDFVKLRMLLGVQEKKALN
>Copia-56_MLP#LTR/Copia 113-4856 via tfasty with Copia-93_Mad, 56.7% SW:1084, 3 frameshifts and 3 stopcodons. [Melampsora larici-populina]
MSGRESASDESQLPTPASTPAPFQEEIDKTNANSQLEDQSDHSSSAETAQSSHTVTPAGQDPSLVMASNDPIDTDTPAQR
QSIKMNSILRKIAISTKLTASNYTAWSDGIRFGLMATSYDHYLDSEDAGGQIDAEIVFATKKAIFFWLLASIESTQSTRF
ISMISKFENGIKSTTPSPSLLWKTIRDYHISNSESVKLMLCSEITDLSQGSTKDLIDYIDIFRSKVDAYLGSNGEMSEEE
QARQFVRSLNREWAEKGCDLLDAGHVKFRNLKTELKKTHQTRKMFSSNRQQSSRIAETSESSQGNxTGRWQTCSRNRCMG
QEHPTKPPINQSVTIILITLVKxSWKRSKQEAGEWVEYPRGGRGGNRGGSRGGFCGGFRGRGHGQSSSHENRATSRHIVD
SDFPNSEDLQSAFSNLRLEDREVSYSVELDGNSSCSAQPQLSCIGDHCDSVALIDTGASHHMFHDPGLFESATLMENHDP
GAKLNLAGGGTTLNIHSIGNVNLLNSKGENIKLKDCLYVPELSxNLIAGGRLLRAGAVTTVLEDPNFRIDHGKKELFIGR
FIGEGSMMYVALRSAVSPSSHQSSISKTNQLTILKLHYSLGHPSEKYLKRMWGLGYFKDVLPKTITSKDFEIITKCPVCP
LAKSHCLPFLSTRPRANKFLGNVHVDLSGIIRTSSVSCEEYYILFTDDYSSYRVSFGLPDKSAETVFECFKRYIIFAERQ
TGETLKMFSFDGGGEFINGLLTPYLEDLGIVTRVTSPHTPKENSVAERSNRTINTKARCLMVQSCVPIKYWYHAVSYAVM
LQNRTITTSLNLQTTPHSLWNDRLTSMKRFQPFGCLVYRHIRKEIRGGKFEPVLRTGVLLGATENNHNFIILDLETNKIH
ISHDVTFQPLVFPFMKDAEDGPDWMFIEDLPIEPTDDKESLNEYPIDSINQRDTIDDVDDLIIETTHPSPIKEPQTINDD
QIDPSLIHPLPADEVLPIEAEQPVPELPAAEQPGPKEPRRSERAKQPIERYTPGKTNFIEAFPMRSIVPKMSYSNCSWSV
YQCREAMKARAEPKSYKMAMKAPDADKWRAACDKEMQNIMDMGVWEIVDRPKDAPVVGGRWHFKYKLHPDGSVSKHKARY
VAKGYTQTEGVDFNKTFAPTGQLASFRILVAVAAGKGWSIEQMDAIAAFLNRDLKEQIYLELPEGYDAERANGKVAQLKK
ALYGLKQSARCWSDKVKEKFISMGLTQNPHDACLWYGKDEDGLETLIYLHVDDMAITGDKIAEVKSLLKQKWRMEDLGPA
HCVMGIEINSTEEGGYSLSQPGFIQTVLERFNAENSKPASTPLPGGTKIIKASDNDLIEFQRTKLPYNSLVGSLMYIAQG
TRPDIAYAVGALSQHLSKPSLFAWQMGMHVLRYLKGNQSLGLIYLPQNTAIEGNQSWFYPECHTDSDWAGDPSTRRSTTG
YVFKLNGAAVSWKSRLQPTVSLSSTEAEYRATTEAGQEVVWLRGLLSNISLNQESPTILCSDSTGAVSLTQKSIFHSRTK
HIEVQYHWIREQVKKKTIKLRHISNKNMFADTLTKPLHPGPFRELRDQVGLDVIHGHLKQG
>Copia-57_SB#LTR/Copia 117-4317 via tfasty with Copia-21_SB, 2 frameshifts. [Sorghum bicolor]
MGDSKADMDKTFTPTANLMWPVLTRSNYQSWASHIQCNLEGLNLWDAIEKGEKAERRQDRLALGSMLRGVPTEMHSMLLN
KKTAKEAWEAIKTMRLGADRVKEVNAQKLLGEFEAMAFKPGESIDDFALRITKLVTDLHGLGEESVTDTRMVKKFLCVVP
SKYYQVAVAVEMVKDLKTLTIEDLVAHLRAAEERLEPSVDQVAEKAGKLLLTEEEWAARNKSQMISDSSGSSYKGGGGGS
HQSHDKKHWKRSNKGGDGEARDSGSSSQNTPKRKGKCGKCGAYGHWRRECPRRKAQGDKQEVAHHVNNEGDNGALLVAQV
CNVVRTTAVGGSNVFLNQERVFPSTYDAGTWVLDTGATNHMTGCRESLASLDQSVKGVVRFGDGARVEICGISAVTIAGK
NTDHRVLTDVYYIPSLRCNIVSLGQLEEAGCRVEIDRGVMTVYERSKGWLNLLTKAERKNRLYVMSVNLTSPICLLSKME
EAGWLWHARFGHLNFRSLRDLGSKKMVDGIPLIQQGEQVCDGCALGKHHRKPFPQATAYRATKGLELVHGDLCGPVTPST
PGGKLYFLLVVNDFSRYMWVEFLKTKDEAFESFKKIQAAAEMESGLKLRALRTDRGGEFNSGMFTVYCNAHGIRHNTTAP
YTPQQNVVVERRNQSVVEMARCLLKSKQVPGRFCGEAVMVAVYLLNRAPTKSLNKMTPYEAWYGKKLSVGHLKTFGCVAY
AKKVGPGVTKLEDRTVPGIFLGYEPYSKAYRVYDPVKQRLMISRDVIFDEKKSWTWGVSGTNAAANATVADPTIDGAAIS
DSGSSEAGAAVPGSPVPSTPSLSAPSSTVGTPGTSASGASAQIQWATPPTGAEEDSEGVPLRYRTIPDLLDSTVPFQLEY
SGLCLIAAEEPNSVEQALTENCWRDAMLAEMQAIEANQTWEVSELPRNHKAIGLKWVFKVKKDPEGNVVKYKARLVAKGY
AQRHGVDFDEVFAPVGRIETVRVLLALAAHGGSEVHHMDVKSAFLNGDLSETIFVQQPPGFIVGMGDKVLRLRKALYGLR
QAPRAWNFKLDKELSALGFIRSKLDNAVYKRSSKDSLLIVGVYVDDLVILGPKIEDINQFKEDMKLKFNMSDLGLLSYYL
GIEVKQGKGGITLSQAAYAVRILENAGMEHCNPSDTPMEPRFKLTKGKESEAVNVTVYRSIIGSLRYLVNTRPDLAYAVG
VVSRYMEAPGRVHLAVVKRVLRYVKGTTGYGCSYERGAELKPILLGFSDSDFAGDSEDRKSTTGVIYFLRNSLVTWSYQK
QKIIALSSCEAEYVAAAACQGVWLSRLMADLLGTKETPVKLLMDNMSAIALSRNPVYHDRSKHIDTRYHFIRECIEEGRV
EVEHVGTAGQLADIFTKPLGRVKFVELRTALGVVDVQQLRG
>Copia-59_Mad_gag#LTR/Copia 1517-2494 [Malus x domestica]
MSNLNKLDFTALEVSGRNYLKWVQDVKLHLTAKNLRPAIEEATDKPVGEAEKATAMIFIRRHIHDALQTEYLAEEDPRAL
WVALADRFDHQKDIFLPEARHDWQHLRFQDFKSVNEYNSEVCRIRSLLKFCNETLTEEDLLEKTYSTFSASNIVLQQQYR
AQKFTKFSDLISVLLLAEKQNQLLMKNHQARPTGATAVPEAHYSTNQHPKRQKRRGKGGQKPSHQGQQSQGPSKGGNKAQ
KRPNLAPKAPNFKNKGKAPATMNDDMCYRCGSKDHWSRICRAPKKVVDAYHSRRTKFESNFLQVDEPETTKMEVSDFQED
TTPMED
>Copia-58_BRa#LTR/Copia 18-4144  [Brassica rapa]
MSDNKDEIVAHKDTGMAHKDNGPASIKFPMLTSSNYTVWAMRMKVALKVSEVWETIDPGSKDEKKNNMAIAFLFQSIPEA
LILQVGDIDTAKGVWDAIKARHVGAERVKEARLQTLMAEFDRLKMKEEDTIDLFVGKLSEISSKSASLGETIEESKLVKK
FLKTLPRKKYIHIVASLEQVLDLNTTSFEDIVGRLKAYEERIAEEEEETHDEGKLMYGDTSQDSYGGNYSGGRGRGRSGR
SQWRGRGRGRTGSTFQSQRDAYRQRQNGDASHITCFKCDKQGHYANDCPDKVLKLQETAEKKDEDTQDADELMVHEVVYL
NENKVNPTSFEADLDTENVWYLDNGASNHMCGNRLFFYKLDETITGKVRFGDDSRIDIQGKGSIRFVLKEGEKKILNNVY
YIPGLRSNIISLGQATEVGCEVSMKDKTLMLYDRYGSLMVSTTRSRNRLYKVSLEVDRMYCLQITEATQTSVWHSRLGHV
NINTLKLMAKRKLVTGLPNVEIEKEKCVSCLLGKQARKPFPQATKFRASNPLELVHGDLCGPISPTTPALKRYIFVLIDD
HTRYMWTILLREKSEALEKFKRFKTLVEEETQSKVKMFRTDRGGEFVSHEFNEYCDKKGIKRHLTAPYTPQQNGVVERQN
RTLMEMTRSILKHMNVPNNLWGEAVRHSTYLINRLATRSLDERTPYEMLRSRRPNLSHLRIFGCLCYAKTEAPGRKKLDD
RARALVHLGTEPGSKAYRLLDPVTKRIRVSRDVVFYEEKEWDWSKTEETEHPKAGELVVKLKKLGNESREVEIIQDDEEE
EGEHVIEVDDEEDIEGDEEDDTQEPRRSHRVSTKPSYLDDYILLAEVESERLLMIINDEPWDYNEAKKLKVWIDACKDEI
FSIEKNNTWELVVLPSGVKPIGLKWVFKIKRNADGSISKFKARLVAKGYVQKHGIDYDEVFAPVARVETIRMIMALAASR
GWEIHHLDVKTAFLHGELKEEVFVVQPEGFVVKGQEEKVYKLKKALYGLRQAPRAWNIKLNQILRGLNFQRCSKEPSLYR
KEENKSLLVVVVYVDDLLVTGSSLEVIQEFKREMATKFEMSDLGKLTYYLGIEVYQGENGIVLRQDRYARKILEETGMSS
CNPTHVPMEMNAKFSKSPDDKDIDAREYRRSIGCLRYLLHTRPDLSFSVGVLSRYMQEPKECHGAALKQILRYLRGTCSL
GLRFKRGGNLKLEGYSDSSHNVDNDDGKSTTGHVFYLGDSPITWCSTKQEIVALSSCEAEFMAGTEAAKQAIWFQELLGE
VLNEVCKRVMIRVDNRSAIALTKNPVFHGRSKHIHRRFHFIRECVENEQVEVDHVPGSEQRADILTKSLGRIKFKEMRNL
IGVEDMNEVELKLMGE
>Copia-55_ST#LTR/Copia 184-4527 via tfasty with Copia-6_ST, 81.9% SW:4216, 2 stopcodons. [Solanum tuberosum]
IDYNHPLFLSQSDVSGTQIISFQLAGVENYSIWYRSMRVALLGRNKLGLVDGSCKKEVFPEEMGNHWERVNAVVLSWLMN
SVEKGLLGGIMYASNAQEVWDELFERFNKVDGSRTFNLHKEIATLSQGTATVSTYFSRLKNLWEEFEALVPSPGCNCEKS
KGFVVHLQKLKLFQFLMGLNESYNQARSQILLMSPMPSVNQAYGMIISDEGQKSISANSGILGANPASGGNNFDMAMFTR
NGSTRYKKNYNVQCEFCRMKGHTKKVCYKLVGYPSDYNKFRKKGVQAGNSSYPSNARAHNVITDDQFQDSEQCDIMGDTF
ENISEGSKANYKGIAYKSEFPSQNRESEVGVYPFTKxQYSQIVSLLKNMSDNNTSTTANSVPSANVAGMNQLDYAVKNIQ
KWIVDTGATNHMVANVNLLDKPAIVSRGVYLPNRDMAKVAHAGSSSITSRTSLSNVLHVPQFKINLLSVSKLTKELGCSV
SFFPDFCLFQDLSNGRVREIGREENGLYILTGSIKVQQSLNSGCGFAVKESHVHEEAADVELWHKRLGHASSRSLNQLIS
VKTESIANTLNNCTVCPYAKQVRNTFPTSSIQTSACFDLVHMDVWGPYKVPTFDGNRFFLTVVDDFSRLTWVYLLKLKSD
VCVVIKQFIVYAKTQFGRCVKVIRSDNGTEFVNTVCRDLFKDFGIVHQTSCAYTPQQNGVAERKHRHLLEVTRALKFQAD
IPSNLWGLCVLAAVHIINRLPSSVLQNKSPYEVFYNKKPCLSHLRVIGCLCYAKVVQEVDKLKPRSRMTVHMGYSMTQKG
YILYDLETRKLGVSRDVLFKEDVFPFKNNTSESGNKLFVPCDSECGMNDMAEVSVTHEGTTHEVHNTQPEEAGQVGVPVM
PDKVTRRSARDRNPPVWLKDFVSLSVNETVDYPMSKYVAYAHLAPRYQAYVAAISASTEPKSYYEAITDPRWVEAMKEEV
SALQQNNTWEVVSLPEGKQPIGCRWIYKIKYKADGEIERFKAKLVSKGYSxKEGIDYQETFSPVVKMKTVRSVLALAAIK
QWHIHQMEVFNAFLQGDLFDEIYMDLPQGFQSQGETKTVCRLKKSLYGLKQAPRQWNAKLTEALLKFQFQQSQYDHSLFT
KKSTEGITVILVYVDDMLITGDSLKLINETKGHLQQAFKMKDLGELKYFLGIEFARSKEGILMHQRKYALELISEVGLGV
AKPAMTPMDANIKLTSKEYDDHVMKGQVEHMADQGSYQKLIGKLLYITMTRPDISFCVQTLSQYLQAPKQSHMEAAIRIV
RYLKKEPGQGVLLSSNDNIEISAYWAACPNSRKSVTGYVVKLGDSPVVWKSKKQTIVSKSSAEAEYRSLASTVAELVWII
GLIKEFGVDVTLPVKVYSDSKAAIQIAANPVYHERTKHIEIDCHFIREKIMQGVISTNYIPTNEQPADLLTKSLFRMQHE
SFEFQVRH
>Copia-50_GM#LTR/Copia 134-4114 via tfasty with SHACOP8_MT, 81.4% SW:3850, 4 stopcodons. [Glycine max]
MDNITQSSTIYVPIFNGENYDFWRAKMETYFSSQDLWDIVQEDFTILADTSALNASQEKELKKNKQKNSKALFILQQAVT
NPIFPRIMGAKTAKEAWNTLQEEFQGSVKVRAVKLQSLRRDFELLKMKESETVKDYYSKVKEIVNQMRAFGEDILDKKIV
EKILITMPQKFDPIVTTIEETKDLSTLSETELVGSLEAYEQRLYRHKEDTIKNAFQSKFKFQPQNKENRGKKNYGKTSRR
REGSRNFLKNKTNKNPPCNICKRQGHVEKNCWFRNMPQCNHCKKFGHVEKNCCNKNRHQANIAEERDQEQCTFYATQDSI
KEKGGNLYLDSGCSNHMAKDETIFKSIDESVKVKVRLGNGSVVESKGKGTVMVETDKGTRLIHDVLLVPSLKENLLSIGQ
MMERGYTLHFEGGVCxILDNKNKRSEIAQVKMNKSNRSFPLNLKYATNISMKVQVDDSWLWHRRFGHFNIHALKLLHEKN
MMRDLPSIKENNEVCEGCLLGKQHRFPFSTSGAWRAKDLLELMHTDVCGPMRMPSYGNNRYFILFIDDFSRMTxVYFLKE
KSEVFGVFKKFKALAENQSGKRIKVLRSDRGKQYTSREFERFCEDEGIERKLTVAFSPQQNGVSERKNPKVMEMARSMLK
EKGLPKTFWAEAVYTAVYILNRCPTKSVKDKTPIEAWNGKKPSAKHLRVFGSICYIHIPNVKRHKLENKTIRGIFLGYSN
ISKGYRVYNLQTKKLVISRDVVVDEYTSWNWDEEKVEKNVLIPAQLPQEETEEEDPGEPPSPPPQQQDQELSSPESTPRR
LRSLVDIYETCNLAILEPGSFEEASKQELWVKAMEEEIQMIEKNNTWELVNCPHGKDIIRVKWVYKTKLNSDSTIQKHKV
RLVAKGYSQQPGIDYNETFAPVARLDTIRALIALAPQKGWSIHQLDVKSAFLNGVLEEEIYVEQPxGFVSEGKENKVLRL
RKALYDLKQAPRAWYSRIDQYFMDRGFRRSKSEPTLYIKSQGQYTLLLSLYVDDLIYTGNNTKMMMDFKEDMMKTFEMTD
LGLMSCILGIEVSQRNEGIFISQKKYTEGLLKKFKMYGCKPIATPLITNEKLQKNDGTPEADASKYRSLIGSLLYLTATR
PDIMYATSLLSRFMQSPSQIHFGAGKIILRYLQGTKEFGIWYTTETNSELLGYTDSDWEGSANDMKSTSGYAFSLGSGMF
SWASKKQATVAQSTAEAEYVAVAEATSQAIWLLRILEDMGEKQDEPTKINCDNKSAIAMAKNPVHHNKTKHIAIKYHFIR
EAEATKEIKLDYCRTEDQIADIFTKALPRPRFEELxAMLGVTEICIK
>Copia-48_ST#LTR/Copia 67-4619 via tfasty with Copia-74_ST, 69.0% SW:3212, 1 frameshift. [Solanum tuberosum]
MGTEAAATVLPSGTSSSVDGQSGQVMNIDVHHPYFLHNSDSPGMNLITSTFDGKGFPGWRRSILIALSAKKKLGFINGTC
TAPDPQTPQYAQWSCCNDMVISWLLNSLTKEIADSVIYSKTAKELWDSLEHRFGRTNGAKLYHLQKELSGTVQGNSDVAS
YFTKLKRLWDELDALNIMMCCSCVCVCEGKSKLVKSLADQRLIQFLMGLNDVYAQARGNILMMNPLPNIDYGYSLLLQDE
NQRETYANSSFPNDAMGFMINSQGRNLQRSGNVVTKGNFPQGSFTPQRNHIPNSREVRGNYKSKGRRTKYDPNVSCIHCG
KTGHVYDNCYRRIGYPEDFEFTKSREFDPSKQRGFQGRANGAFPREDSEVQGMTQQQGTPSNIFYHLNKEQYVALVKQVA
RDIKLEQGSSTTAGFNASAISGTVQKYSGSCLSVFNSSTWIIDSGASKHMCFDSQFFISLTPLPVPLHITLPNSFRIIVT
HAGSVPILPNFTLKNVLFVPVFRYNLLSVNKLCSQYTCDLLFTPSCCVLQGHLMKNNQVFGEVRDGLYLLEHVSPKFRVL
SKDVVSFPKGSNSISQHSSVSFQSSVNVVPNVDLWHVRLGHVPYSVMKKFDFIKFSPDSDFVCDVCPKAKQTRLPFPLSH
IHSTKIFDMIHNDTWGPYKSSTHNGFRYFLTVVDDYSRGTWTFIMTSKSNVFPILKDFLAMVERQFQTQVKCIRSDNAME
LGKGHQEGQFLKSQGILHQTSCVATPQQNGVVERKHRHLLELARSFMFHSNLPICYWGESILTATHLINKLPSKVLQSKT
PYELLFGQPPSYKNLRSFGCLCYVSTLAPHRSKFEPRAVPCVFLGYPINQKGFKVLDLATKKIFSSRDVQFHEQHFPFNS
GVSPPPPIFSSFPSDLTDQLPDPPLSSLIPNEEPPPCSSPAPALPPDLTPIPSPSPSPSHSPPPPRRSGRVTTVPSYLHD
YICNSLVLTDLTGTCFIHPSQPTAFSFHSLSLPNQHHLLSLSQITEPHSFAQASQHPGWTAAMQRELDVLALNHTWEMVD
LPPGKKPLPCKWVYKVKHKSDGSIERLKARLVVRGDIQQQGIDYTETFSPVVKMTTIRCLLTIAVKKDWRVHQLDVSNAF
LHGDLQETVYMKPPQGFISLKPTQVCLLKKSLYGLKQASRQWYAKLAGALIFQGYSSSLNDYSLFFKSTGGLISIIAVYV
DDILITGDDKTEILHITTFLNTEFQVKELGDIHYFLGLEIFREPQGFIVNQRKFTLELLNKFPHTGPAVSTPLDPYFKLT
ADDSSLLSNPTIYRHLVGKLNYLTHTRPDLSFAVLKLSQFMQRPTHSHYSAAIRVLRYLSLDPSQGILLSSDPSLKLLAF
CDADWASCKESRRSVSGYFITLGGAPVSWKSKRQTSISLSSAEAEYRSMRRVTAEITWLARLLTDLSAPLSLPVSVYSDS
KAAIHIAKNPIFHERTKHVELDCHFVRQQYVSGLISLSFIPFVHQLADLFTKPLPGPSHQLLLHKLGVSSPPSNLRGD
>Copia-51_ST#LTR/Copia 101-4774 via tfasty with Copia-74_ST, 81.2% SW:4978, 3 stopcodons. [Solanum tuberosum]
MAVSLDEPASSSASTVTGSIDPNNPLYVHPSHSPALMLVPVPFDGMGYRSWRRSIMRSLSVKNKLGFINGDFPKPTANSP
QLRLWQRCDDMVTSWILNSLAKDIADSVEYVTDSVELWKELEDRYDQTNGAKLYQIQKEINDLTQGVLDITSYYTKMKRL
WEELSNLNANNQCTCTCLCGAKDGTHKAEQDRRLIQFLMGLNEVYTVIRGSVLMMSLLPSMAQAFSILIQEEKxREFKPK
GQMLMESASLNAGSHSTGNYSAGAGPSNSKGFKTNYSAGGSSSMTSTSKSNLFCDHCKRSGHIMAKCYKLHGYPQDTQNQ
TYGRNGYNNNNEYRNPPRQNQSNNPRFNKGKRVATNVHGSDVFSGNDEYIDKGNQPMSLTREQYGHVMNLLQHFHGGEAS
SSSNNPTEGAVDLAGIVVCSSSLDFDKFSCKHFDSKADLWIIDSGASNHMTFNKTLLTNRKTLPYPLLVSLPNGYKVKVT
QVGDVILTSSIILHNVLFMPSFKYNLISVHSLTIHLKCVVSFTDALCLYQAPSLKRPQVIGNNKDGLYFMCTKCLKTDFQ
PEHCSSKPESCSSKNCSPVSNSHASFNSFNSCHLQSTVMNPISCNKNELLSMTSCLSHGNNVDLLWHTRLGHVPFAKMRG
ISSIPAKFSHKQPFLCSVCPLARQTRLPFSQSTRISTKIFELLHIDLWGPYHVATYNNYRYFLTMVDDHSRTTWTHLLSC
KSNALQTIKAFITLVENQFSTTVKTIRSDNGLEFTSNEASLFFQSKGIIHQRTCPYTPQQNGIVERKHKYLLETARALLF
QSKLPTKYWGECVLTATYIINRLPSSYLNNKCPFEILHKTQPDYSSLRSFGCLCYPTVPKVHRGKFEPRTGPHIFIGYPF
GTKGYKVLCLTTKRIHISRDVIFHENVFPFALRTHKGTFPSVLHSIPFVETNIDMHDVVDCNVPNANLYQPCPMPYLPND
NTIIESSSLPVPTPQPINPIRKSHRTPQVPSYLSDYICSLPSLRNTNATSALTPILPLHTVFSNNSHIAPDNLSPNSQLL
VKNVCHDHEPSSFEEAALYPAWQAAMTQEFEALHNNKTWDLVPLPIGKKTIGCRWVYKIKHKADGSVERYKTRLVVKGYT
QQAGIDYTETFSPVVKMTTVRALIATTVKRGWDIFQLDVNNVFLHGDLHGEVYMDLPPGLEVAGTTTVCKLNKSLYGLKQ
ASRQWYEKLSAALFSKGYSHSMSDYSLFINKSNQSFIFVAVYVDDVIITGTDPLEIQHLKxFLHDTFKIKDLGKVHYFLG
LEVLYRDGGVIISQRKFVLDLLKEYGCIECSSFSSPLDPNVKLKAKEGPALPDPTFYRKLVGKLNFLVNTRLDIAYGVQH
LSQFMQDPREPHLQAAYHLLRYLKGDPTLGIFMSSQPDYSVHAYCDSDxASCPDSRKSVSGYLVFLGQTPISWKSKKQEA
ISLSSAEAEYRSLRKVVGELVWVDRLLQELDVPFSKPIAIHCDSQSALHIAKNPVFHERTKHIEVDCHFVRNKLQDGLIS
LHHVVTTEQLADLLTKALTGIKQSSIMSKLAVKASHPT
>Copia-54_MLP#LTR/Copia 51-4497 via tfasty with Copia-7_SMo, 62.6% SW:1595, 1 frameshift and 1 stopcodon. [Melampsora larici-populina]
MSNDNFEDLPNTPASLPDFEIQLESESNNSESLHSSRSSTPTGLNSNSTFNPRTLIPLNNLVTPTTNSNMSNLFNDNSNS
NSESISSVPILTEDNFSTWHLKVESFIIMKNLDGIIGGREAVPSDDALRATYDLRCKYLVGFLRLKLSDRIAELLINDSN
RRNPIELWKTIIGHFASTKARNRGRVFSQLFTLSCDGSDLQGFMTTVKKALNDLSATGVKTDEEMISYFILHLLPDDLYN
LKTMITHGAELMDQKLTVDSVLNNIQQYVNNKKVNINSFQSPSSAYTAQRNSSASSRQPSYPICSNGKHNPDTAHSADRC
HQRFPRLKNKNKRSPANGAVNTAAVMSTFSAQEDFALPPVPPAITSFLLAAVQKKWDKVLNLLDSGASVTMFRDQSAFKT
YSECSEDVYLADGNSIQAVGKGTVIVKGIDNVELSFTNVLHIPSLSSNLISLSQLFSKGFELMNSGRDAFEIKKAKQSVL
SGVISNGIFVLNLSHGKSLALSSTKSILTDEATLLHRRLGHLNHRYMKMLFNSSVSSLSPCSTCTLSKHHCLPFSGKLPR
PTAPLEVIHSDLSGRISPESIGGGRYYFKLTDGFSKYKHVYILKHKSETFSIFVQFKKLVEKQLGVPIKRLVNDNGGEYI
SEEFLTYLKNEGITSDFSAPYTPQQNPISERGNRTTTERARCMLIDTNLPKKFWGEAVSTAVYLENQCPEASIGYKTPHE
LWTGKIPSVDHLHIFGCAAYPLIPKQFRSSKFSPVSKKCILLGYQERLHNYCLWDYGSRKIIYSHDVIFNESDFTHSSLS
SINTDYDVLTEDIPSLESSNSDPVMSDQEPPVPIMNNLSSPVQVSSSLDSIPSHGFTPAGSPPIEYTHIEDGDPITTSSS
SDSTNVSSESENVDVVRNDSSILIPPIPESSRWSYQPISQSAPRDISSSINPNNILSTRRRQAHLTRANPSTTPKTYKQA
MRGDLANEWVEAMKVELDNMERRGVWSVCELPEGCTAVGTVWVYKTKTDVDGAFVKFKARLCAQGFSQVANVDYHETFAP
TGCKTAFRVLLAVAGVNNFDVHGMDAIAAFLNGIPGETIYLRIPEGLHIDGATDKTVLKLNRALYGLKQSPRCWYKQLTD
FFISIGFxSSKADSCLFISSDDSEPCYVAVHVDDMLITGSKKGIASFKSAISKKFEMEDLGEATSILGMKISRNRHLKTI
SLSQEHYVETLLDYYGMSQCSPVSTPMIPNTCLSPASAESIAAFKASGLNYCQSVGSVNYLAQCCRPDLAFTCSQLAQHL
ENPGNEHWAAFHRLLRYLRGTSKYNLTYGSSSPAEGSYAHAKTENFADADWAGCINTRRSTTGYLFLIFGGPISWKSKKQ
PVVSLSTTEAEYKAVVEAGQELMWLQTLFTDLKVVTDPMIPLFNDNQGCISLASNPIFRARTKHIEIQYHWIREKIEDKT
FLLSYKPTAEMTADIFTKSLPRVLHNRCCVSMGLTSACLQIS
>Copia-54_BRa#LTR/Copia 103-4468 via tfasty with ATCopia15, 87.6% SW:5284, 1 frameshift and 1 stopcodon. [Brassica rapa]
MVSVKNIPRRSTRTRIHTNRASTQSPVADSPPISPPNTSDLNIGAQQTTSLTNSQDPAQSPLFMHNADHPGLLLISIRLD
GSNYDDWNAAMRIALDAKNKISFVDGTLTRPPDSDARFRLWSRCDSMVKSWILNTVSPQIYRSILRLRDAVDIWRDLYGC
FHMTNLPRTFNLTQEIQDLRQGSMSLSEYYTTLKTLWDNLDSSDEPDKPCVCGNAAQQQLKAERAKIVKFLAGLNDSYGI
IRRQIIMKKVLPSLVEVYNILDQDDSQRGFSNVIATPTAFQVSENSQSSLGDNSICYVQNGPNKGRPICSFCKRVGHIAE
RCYKKHGFPPGFKSKYPEKTQTARPVTAQVSLNPISTPDVKPPHLDNLIGNLTKDQIQQFIALFSSKLQPQFSQNSNEAS
TSKSINDLSGIAFSPSTYCFIGILNVSSQTLSPQHWVLDSGATHHVAHDKNLFASLDDSVVSYVNLPNGSTVKICGVGTI
QLNKLLSLQNVLFIPEFKLNLLSISSLTSDIGSTVTFDPSTCLIQDPSRALTIGQGRRMGNLYVLDTNASAVSVNAVVDI
GVWHKRLGHPSYSRLDLIAAHLGTTKSKNKGSSHVCHLAKQKKLSYPSPNNICKHNLELLHIDIWGPFSVETVDGFRYFL
TIVDDHSRSTWVFLLRTKQEVLTVFPTFIQQVENKYNTKVKSVKSDNAPELWFTQFYKDKGITPYHSCPETPEQNSVVER
KHQHILNVARALMFQSGVSLSLWGDCVLTAVFLINRTPSQLLSNKSPYQVLTNTDPDYTQLKTFGCLCYGSTSPKQRHKF
LPRARACLFLGYPYGYKGYKLMDLESNVVFISRNVVFHEEVFPMLHKVPKDIPQSVFTPTDSELSITPISSSPPSPPTSP
LLSSSSLPSTRSKKPPAYLQDYHCNSLHSDTTFPISSSLSYSKISPSHLAYINNITKIPIPHSFAEAHESKEWCEACDIx
IRAMESTNTWEVTILPKGKKAVGCKWVFTLKFNADGTLERRKSRLVAKGYTQKEGIDYNETFSPVAKMATVKLLLKISAS
KRWSLKQLDISNAFLNGDLDEEIFMKIPDGYAQRKGITLPPNAVFRLKKSIYGLKQASRQWFRKFSSSLTSLGFVKAHGD
HFLFVRRQEDDFVVVLVYVDDIIIASTNDAVADILTENLKSFFKLRDLGPLKYFLGLEIARSSSGISLCQRKYSLEMLTS
TGMLACKPSSVPMTPNLKLSKTEGELIPDAALYRRIVGRLMYLTITRPDISYAVNKLCQFSSAPRTSHLKAVYKVLQYIK
GTVGQGLFYSASADITLKGFADADWAACPDSRRSTTGFTMFVGDSLISWKSKKQPTVSRSSAEAEYRALALACCEIMWLV
ILLRELGVFSTTPPVLYSDSTAAIYIATNPVFHERTKHVEVDCHTVREKLDEGKLKTLHVRTEDQVADILTKPLFPYQFE
HLKSKMSIHNIFCTS
>Copia-60_GM#LTR/Copia 104-4003 via tfasty with SHACOP18_MT, 87.8% SW:4605, 2 frameshifts. [Glycine max]
MDSETPYTALAPPVFDGDNYQIWAARMEAHLEANDLWEAVEEDYEVLPLPTNPTMAQIKNQKERKARKSKARASLFAVVS
KEIFTRIMTIKSAYEIWSFLKNEYEGDERIKGMQALNLVREFEMQKMKESETIKEYANKLLSIANKVRLLGSEFSDSRIV
EKILVTVPERFEATITSLENTKDLSKLTLAELVNALQAQEQRRRMRADDSVEGALQAKLQINQGEKSKWKKYKKKNFNTQ
EAAANTSNKSGDNNKGFPPCKHCGRMGHPPFKCWRRPDVKCEKCNKLGHHVRICKSNLQQKNEAQVADQQEEEEQLFVAT
CFTSSSSTECWLVDSGCTNHMTHDQELFRELDRSQVSKVRIGNGDLITVEGKGTVAIESCTGTKLIYDVLYVPEIDQNLL
SVGQLVEKGFKVIFENKHCSIKDVNDKEIFSIKMRGKSFSFDPLKEEQAAYPATVNSTEAWHKRLGHFHHAAVLNMQRKE
LVHGLPHLDSKLPSCEACQYGKQARLPFKQSTWRATEKLQLIHTDLAGPQRTASLKESKYYIVFIDDFTRMCWIYFLKSK
SEVAGVFWRFKQWIEKQSGCMIQALRSDNGKEYTSAQFAMFCEEAGIEHQLTAPYTPQQNGVSERKNRTIMEMVRCMLHE
KGLPKEYWAEAANTAVFLLNRLPTKAVNGKTPFETWYGYKPSLKNFKVFGCLCFTYVPQIKRDKLDKKAEPGIFVGYSSV
SKAYRVFQPHTRKILISRDVYFMENEKWSWNDTEKMSIADPLQNQDELIDDAPVRGTRLLSDIYERCNVAVLEPAGYRDA
KEDPKWSAAMQEELVMIDKNQTWELVERPEHRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDFFDTFAPVAR
QDTIRMLLAIAAQKGWKICQLDVKSAFLNGFLEEEIYVEQPEGFLAKGHEDKVYLLKKALYGLKQAPRAWYSRIDEYLSK
LGFVKSLSESTLYVKGDQANFIVISLYVDDLLVTGSNVELIQQFKDDMMQVFEMTDLGEMSYFLGMEVKQNEGDIFICQR
KYAKEILKKFNMENCKGMNTPMCQKEKLCKDDGSEQVEEALYRSLIGCLMYLTATRPDILYVVSVLSRFMNCAKESHFKA
AKRVLRYVKETLNYGMKFSQSQDFELQGYSDSDWAGSLDDMKSTSGYCFSFGSGMFSWSSKKQEIVAQSTAEAEFIAATT
AVNQALWLRKMLTDLHLEQDTTTEVMVDNQAAIAISKNPVFHGKTKHFSIKLFFLRDVQRDGAVCLKYCKTEDQLSDIFT
KALPRSRFELLREKLGLANH
>Copia-67_ST#LTR/Copia 48-4189 via tfasty with Copia-87_Mad, 67.0% SW:2232, 4 frameshifts and 1 stopcodon. [Solanum tuberosum]
LLPQFKVDSYHSSLGLPNPSPTISSIKGFVPIELTYLNYLTWKKGFLTVLKSHNLLPLVDGSIPCPSSTHDEYRLWIQCG
TITLSWINATLSPPVLDSLLNYACDTSKKAWDILASLYLDQVSSSSIHLKSKFQNLKKGSLSMEDYLQKLHSLPCSLRAV
GKPVTDDDLVTQALQGLPPSYRTFVSGLNVTGTLPSFLALRPLLLTEETHINATENEDSTSHIALVASAQAPPLFQPPSS
NSSHANQYPRKSHNGCGRGRLGRGKGQNQYSSHSIFSPHWAGFQPHFHPSSSVDGILGRPRFTSTKQCQICFHFNHTTLE
CRNRFNHSYAPNLLPKSFAAVNLEEVQPLVWYPDSGASAHMTNNPSLLSSTSPYSGLSQVIIGNGNLLSILSTSTSFLPT
SSKPLRLNNVLYVPSLQKNLMSVHHLCVDNNYFIQFTESSFFVKDKKTKQVLFHCKNNGSLYPVRSTSHHSCHVALSSAV
SPSYLWHQRLGHPGERSLAALVRRGFINCNSSSGNSGCNVCHIGKQSKLQFPLSPNIAPAPFLLIHSDVWQAPFTSNSGF
GYYILFLDDHTKYSWIYLMRNKSETFAKFKEFYNMVANIFHSSISYFQSNGGSEYNNSHFRSFFSEHGIIHRFSCPYTSA
QNGRAERKHRHLNNQIRCLLFQASMPYSFWADASLFGVHLIDITPLPIINFTSPYEKLYGKPPDYNLLKVFWCLCFPYVA
HSFAHKFLPRSKACLFLGVSPQHKGFKYLDPSTNQIILSRHVNFQESFFPYSSMFPANPSPLTVPSSQTAPPIFSPVQFP
DMCASPITNFDFISTSDTTSSPSISISPNMSITSPRTLNSTCSNNPVFSTSYPRTHVMVTRSMTRSLKPRVFPSLNVSVS
TAPRWLNAMSEEFNALVQNHTWTLVPPPPNVNIVGNKWVYRIKYGPTGSIDRFKVRLVAHGFSQLPGLDYRETFAHVIKL
STVHVVLSLALLNNWCMHQLDVSNAFLHGELNEDVYMRQPKGFEHSDYPQHVCKLSRAIYGLKQSPRVWYTRLATYLLDL
GFKQSTSDYSMLTFWQDNSILILLIYVDDIAVFGSSQRLVYDFIDSMKAEFAMKDLGSLHYFLGVEIVYNTARALLLQRK
YISDLFHRFDLAEVKPVQTPLYSKLDWHSVDTQLLDDPSLYCKMVGSLQYLSFTRSDIQYAVNMASQFLHQPRFIHLQAV
KRIFRYLKGTPAHGLQLEKNISNSLTLISDSDWAGCTTTRRSTSRFCIFLGSNLITWSIKKQSTVAHSSTEAEYRALAVA
TADAIWIQFLLRDLGIYLSTPILAKCDNIGAIHLAHNPVFHSRSKHVALDYHFIREKIAQGDLTVSHVPTAQxLADVFTK
GVSVTKFKEFQVNLHVRSSTSD
>Copia-66_SB_pol#LTR/Copia 3715-7263 [Sorghum bicolor]
MSSDVNPMEELCLVDSGTTNTILREMKYFQTLKKREGNVMTIAGSDALIVGSGRATIVLPMDTQLMIEDALLFPESTRTL
LSYRDIRKNGLHVETHVDNKEEFILFTKLTGFGKQVCEKIPSLQSGLYYTYIKPISHVAYKIIFQNVDLFQTWHDRLGHP
GIGMMRKIIGNSFGHNLHKAKFPQSSDFVCTACATGKLILRPSTLKIKTEPLKFLERIQGDICGPIQPVCGPFRYFMVLI
DASTRWSHVCLLSTRNHAFAKIMSQLIQLKSHYPEHRIQTIRMDNAAEFSSHAFNDYCMAMGIQVQHSVPYVHNQNGLAE
SLIKRIKLIARPMLMNCKLPTSCWGHAVLHAAELIQLRPTAYHDNSPLQLVRGDPPNISYLRKFGCAVYVPISPPQRTAM
GPHRKLGIYVGFRSPLITKYLEPLTGDLFTARFADCIFNEDHFPTLGGEMYQNECREINWNAEGISSSDPRTMETELQVQ
RLIDLQNIANNLPDAFTNYKGVVKSFYPARNVPERVEVPNKTTHVIPLGNKRGRGNSKVQDKKQKKVVNEDQLSVDIHLV
TNQYLLERFDMLPDPLMCVNTKVGTSRNPRSIILGNNDDPSRVDEIAINYIETGESYDRKATIVDIYFSEQIAEILQNDP
DPKSMVECKKRSDWNKWKDAIETEIASLSKREVFSAVLATPPGIRPVGYKWVFVRKRNENNEVVRYKARLVAQGFTQRPG
VDFNETYSPVMSGITFRYLISLAVQNRLSMQLMDVVTAYLYGSLDSEIYMKVPDGISIPNSEANRNMFCVKLQKSLYGLK
QSGRMWYNRLSEFLTHKGYTNNDDCPCVFIKKSQKGFCIISVYVDDINIIGNEQDINEARHHLKAEFEMKDLGQTKFCLG
LQLEHFSSGIFIYKAAYIQKMLEKFNMDKAYPCKTPMVVRSLDIEKDPFRPREEGEKILGPEVPYLSAIGALMYLANSTR
PDIAFAVNLLARHSATPTKRHWVGVKTIFRYLNGTRDLGLFYSKNQDQNLLGYTDAGYLSDPHNGKSQTGFVFLNGGTAI
SWKSSKQTLVSTSTNHSEIIALYEASRECVWLRRMVDHILKSCGIGALDAPTIIFEDNAACVVQMESGYIKSNITKHITP
KLFYPHELQKNGEIEILQTKSCDNLADLFTKSLPYSMFHKYVEGIGMKRLRDLQKSGGVSLDK
>Copia-69_GM#LTR/Copia 58-4062 via tfasty with Copia-83_PT, 81.8% SW:4036, 3 frameshifts. [Glycine max]
MEGVVTHDGDMFKLTAENYSYWKPMMEDHLYCKDLHEPITHENKPEGKKDNKWELLNRKVVAMIRKYIDRSLFEHVSTYT
NAYELWTKLESLIQKKTPRNKAHLVRRLVKLEYMDGQNMIEHLNTFKGIVNQLKKVDMNIDDELQTLLLLSSLPESWDTL
VVTLSNSAPDGKLSMDNVTDSLLNEESRRKEKGLSSHSEANVVENRGRSEHRGKGGHGKSRGRSKSRPKGLSCYYCGKSG
HKKSECRFLKRDQKAGTVHANQIDPKKKNEGGTTTVVASNDENVFLIGNENYLNIASDDCIWIIDSGASFHVTPHEGFFS
SYQKGDFGMVKMGNHVTSKIVGIGEVTLMTENGSKLVLKEVRHVPEMRLNLISTGKLDEAGMTNQFGAGRWKLSRGSMVV
ARGKKEGSLYIMQGKICKGEMNVAQDTTKELWHKRLGHMSEKGLEFLAKDHFPNIKGQPLESCEDCLAGKQRRVSFQRSD
EARRRKQILDLVHSDVCSTSEKSLGGAQYFVTFIDDHSRKVWVYPLKTKDQVLQTFKEFHASVERETGRKLKCLRSDNGG
EYRGPFEAYCKAHGIRHEKVPPKTPQLNGLAERMNRTIAEKVRCMLSHSKLPKTFWGEAVKTVVDLINLSPSRPLNGEIP
EEVWSGKKASYGHLRVFGCKAFVHIPKDERAKLDAKAKECIYLGSPRDELGFRLWDPINKKIVRSRDVVFFEDQTIHDIQ
QSEKPKPIVRNSRGETLLKEAEPTQMIETNQTEQPPQIEQPDQMEQSQMEHPTQMMEESTMETVQTEDESQVRRSTRVRQ
PSKRYFSDEYVNLTDDGEPQSFQEAIEIDDKEKWMQAMKEEMQSLIENQTYDLVELPKGRKALRNKWVFKLKNEDNNSNP
RYKARIVVKGCNQKKGIDFEEIFSPVVKMTSIRAILGLAAKQDLEVEQLDVKTTFLHGDLEEEIYMEQPEGFVEPGKEHL
VCRLKKSLYGLKQAPRQWYKKFDLFMAQHDFRKTSADHCVFVKNYENGESIILLLYVDVGKNKMKIDALKKALSKSFAMK
DLGPVKKILGMKITRDRSKRMLWISQEDYVEKVLERFNMHNAKPVHAPLPGHFKLSKKQCPKSEEEKEEMSKVPYSSVVG
SLMYAMICTRPDIAYAVGVVSRFLSNPGNEHWDAVKWILRYLRGTAKRCLCFGNGNLMLLGYTDADMAGDVDSRKSTSGY
LTTFAGGAVSWQSKLQKCVALSTTEAEYIAAAEAFKEMLWMKNFLNELGHDQDDYVVNCDNQSAIHLAKNPTFHSRSKHI
DIRYHWIREVLDEKKLKLEKIHTDVNWSDMMTKVIPTKKVEDCCQGAGMVVHPN
>Copia-70_GM#LTR/Copia 1308-5537 via tfasty with Copia-85_VV, 78.2% SW:3708, 6 stopcodons. [Glycine max]
MHSCFDLTVNFSVNNCFASIEILNGSNYRNWKQDLEFSLGISDLDLALRESKLVINSESTPEQKELLAKWERSNRLSLIA
IKRTVSEHLLSGLPEKATAKEFLDALGERYQVSDNAESRCLMKQLTDMRYDNVRGVREFIMKMVHIQTKLKSHQIDLNEK
FIVKHALNSLPADFTQIKTAHNTIGEKWTVNDLITKCVVEEEKLKKEKSDIALLSVHGKPTFGKGHWKNTKSASNASHRY
QGSGKPGKGQHHNVGGPRPAIFKKGIWCFWCKEKGHKKSDCGKFKAWLENKQKSGGNNLAFVCLESNLVDVPIDSWWLDS
GSTTHIVVSFQGFRNLRESKLRVGNDLEVCVEKVGDVSLVLASGFELVLKDTFYVPSFRRNLIYVSCLDKLGFSFTFGDR
KINLMLNSQIIGYGSLVDGLYKLSLDSDNISSSLVVENFVAKRSKVEEKSFMLWHKRLGHISRERVERLTKTYILPSLDF
DDLGTCVDCIRGKFTKTKKKGATRSSDLLEIIHTDISGPLTSTICGNKFFITFIDDFSxYGYLYLIKEKFEALEKFKIFK
TEVEKQLGKIIKIVRSDRGGEYYGKYGATGQHMGPFALYLQDCGIVPQYTMLGTPEQNGVAKRRNKTLKDMMRSMMSRCN
LPEFLWGEALKTTLYILNRVPSKSVPKTPFELWTGRKPSLNHLRVWGCPAEVKIYNPLQKKTDPKTSRCFFIGYPDRLKD
TGSFVRxGNKIVESMNAKFLELDVADPVVPSNELMSSHLRLFLCHYLFQLLVFEFDxLGFRSPNxDxGHFPVETTVATGD
IVGSQANDMLDPPTVDENAQPVEQIPQVPLRRSTRERRPAIGDDFQVYLSEDAYDIGDIVDPKSYQEVVSCPQSEMWKHA
MNEEMQSMSVNGVWELVELPENCKAIGCKWVFKTKKDSNGNIERFKARLVAKGFTQKEGVDFKETFSPVSTKDSFRIIMA
LVAHFDLELHQMDVKTTFLNGDLSETIYMQQPEGFRISGNEDLVCKLKRSIYGLKQASRQWYLKFDEVVTSMGFEENKVD
xCIYLKVSGSKFIFLVLYVDDILLASNDLGMLHETKHMLTRSFDMKDLGEASFVLGIEIHRDRSRHTLGLSQKAYIDRVL
ERFNMQNCKPRDVPVVKGDKFNKDQCPKNEIERAEMNDRPFGSALGSLMYAQVCTRPDIAFIVGVLGRYQSNPGNDHWIA
AKKVMRYLQKTKEYMLVYRRVDNLEVVGYTDSDLGGCPDDRRSTSGYIFMMAGGAISWKSKKQTLVASSTMQAEFIACFA
AATHVVWLRNLVTGLRIVDSIARPLKIFCDNNVAVFYTKNNKTSRGSKHLELKYLTVRDLVKDGSIVVEHVDTDSMLVDP
LTKGLRPVVFKRHVENMGIVSSFDILVSGSFRFMLFPFSCCWILILNFGK
>Copia-69_VV#LTR/Copia 133-4021 via tfasty with SHACOP18_MT, 80.4% SW:3495, 2 frameshifts and 3 stopcodons. [Vitis vinifera]
MATSSISLLAPQIFVGENYQIWSVKMQTYLEAFDLWEVVAEDEPIAPLPANPTLAQIRAHTDEKTRKFKAKTLIQNSVVD
SVFHRIMNCRTTKEAWDKLKLKYQGSDRTKQMQVLNLKRDFEFLTMQEDETITKYSEKIALIVNKIRSLGEEFPDANIVE
KVLVTLPERFESKISSLEESRDLSQISLAKLMNVLQAxEQRRDLRQENVTEGAFQMQTLQSNKDKNQFSKKKSKNREKSS
KEGAQQKKYSTCSHCKKTTHLEKYCWWRPDAICGNCKQLGHVTKVWKYKNKGPQFQQAQVADADSQEEKLFVVSCFSSQD
SYNAWLIDSGCTHHDVTIFKDLDKTYNSMVKVGNGGYVDVKGRGTVAIKTNSGIKLISDVLFVPDISQNLLSVGQMLEKQ
YSLQFKDNQCIIFDPYGEKLLCLKMKSKSFAINWENAAEYAYAGVTQSVSDLWHKRFGHYNQRSLVELKKLELVEDMPNV
SNEAQICEICQQGKQSRLPFKNNQAWRATEKLQLIHTDVCGPMKTTSLSGNKYFILFIDDYTRMCWVYFIKLKNEVFSVF
KQFKALVENQSNLSIKILRSDNGTEYTSSQFVEFCSTAGIKRQLTTPYTPQQNGVSERKNQTVKQMARCLLFEKKMPSNF
WAEAVNTFAYLLNRLPTKSLKNKTPHEAWYGVKPFVNHLKIFGSICYYHVPKPKRSKLDGRAQKGILIGYGTSTKGYRIF
CLQINKVVLTRNVKVDEMTTWDWKNKKDAQSDADFDNHEDFQTSKFVDDFPVRGTRSLEDIYQRCSLSITEPKSYVEAKD
SEAWRRAMQEELKMINKNETxQLVERPKNHKVFEVKWVFKTKLNSDGSICKHKARLVVKGYAQQYGVDYQETFAPVARYD
TIRLLFVLSAQNSWHIHQLDVKSAFLNGFVDEEIYVEQPDGVVAPGKKDYVYLLRKALYGLKQAPIHCMTKLGFVRSQSE
ATLYVKTDDVQLLIISLYVDDMLVTGNHPKLIQSFKDEMNRVFEMTDLGVMKYFLGMEVMQSCSRIFICQQKYAMDMLKK
FKMQDCKLVSTPMTTSEKLSKDDGSEKINEGLYRSLIGSLLYLTTSRPDILFVVSVLSRFMHSPSEKHFSAVKRVLRYIK
GTIDLGVQFSKSVEGDLKLLGYSDSDxGGCVDDSRSTSGYLFSLGSGFFTWSSKKQETTGQLTAEAEYIAVASAVNQALW
LRKILKDLGQEQVEATNIMCNNISAVSISKNLVFHGRTKHIKIKYHFIREVQQSNEVLLVHCSSENQLADIFTKPLPMER
FEALKQKIGVCHPDAKE
>Copia-66_SB_gag#LTR/Copia 2428-3306 [Sorghum bicolor]
MAMAKEFDELALDGHNYPTWASDIKINFASRGLLAHINEPIEGVVLDEQKKYGALMLLRFYIHKDLKQEYLMEENPRTLW
LALKERYDQQKELIWPEANHEWNHLRLQDFKSVADYNHVVHKICSKLKFCDKEPTDADKIEKTLSTMLPADRVLQQQYRA
SNYTVYSQLIHTLTQAEKHDELLMKNHHKRPVGATPLPEVHNVQNNVKNKKFKGSTSGGPKNKPEKRKFNKKQKPNAKNK
QKGEGKSKNDNKCHRCGTYSHFAKDCRTPKHLVALYQKVLKGSKERQSKRTRN
>Copia-62_VV#LTR/Copia 73-4251 via tfasty with Copia-57_VV, 81.8% SW:4000, 1 stopcodon. [Vitis vinifera]
MSSTASQSSSSSGSAQSSSMASIPSYQMLNYSLPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSVCPEKELRPGEINP
AFVAWRRQDRTILSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLRLEFQSTKKGSMSMIDYIMKVKGA
ADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIREDKISLEAVHSMLLAFEQRLEQQGSIEQLPAMSANYASSSNN
RGGGRKYNGGRGPNFMMTNSNFRGRGRGGRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRFDITFQSTQNNTTGVSN
SGNSNSMPAMVASSNNLADDNWYLDSGASHHLTQNVANLTNATPYTGADKVTIGNGKHLTISNTGFTRLFSNPHSFQLKK
VFHVPFISANLISVAKFCSDNNALIEFHSNGFFVKDLHTKRVLAQGKLENGLYKFPVISNRKTAYVGITNDSTFQCSTIG
NKRELWHHRLGHAATDIVTRIMHNCNVSCGKYKATVCSSCQLAKSHRLPTHLSSFHASKPLELVYTDIWGPASVTSTSGA
KYFILFVDDYSRYTWLYLLQSKDQALPIFKQFKLQVENQFDAKIKCLQSDNGGEFRSFMSFLQESGILHRFSCPYNSSQN
GRVERKHRHVVETGLALLAHAGLPLKFWSYAFQTATFLINRMPSKVLQNASPYFALFKRNPDYKFLRVFGCLCYPFIRPY
NNHKLQYRSLKCVFLGYSLHHKGYLCLDNLTGRVYVSPHVVFDETQFPFAQNISSSPSKDASDESVIPAIIVSSNPSTLS
FHGSNHSMASPNLTSALTHPTPPTDTPTTRSLREPVLEAEVTLPAQQQVVVPPPRVTTRSMSGITKRKHIFNLAAFKISE
PTTLKQAIKDPNWAEAMQTEIAALHKNQTWDLVDPPKDVNIIGCKWVYKLKSKPDGSVDRYKARLVARGFNQTFGLDYFE
TFSPVVKAATIxIVLTIALSYRWELRQLDVQNVFLNGDLVEQVYMAQPPGFLHPNHPNKVCKLKKALYGLKQSPRAWFTK
RSSALLSWGFNSSRIDSSMFVHFGTHSTLIVLVYVDDIIVTGSSPVLIQQLIHKLHSLFALRDLGQLSYFLGIEVAYDGG
SMHLSQSKYITNLLQRTSMLDSKAAATPGTVGLSLSQFDGDLMDDVTMYRSVVGALQYATLTRSDIAFSVNKACQFMHRP
TSTHWSSVKRILRYLKGTTTHGLLLQPSAHFTVQAYTDADWGAQPDDRRSSSGYLVYLGNNLVSWTASKQKVVSWSSAES
EYRGLAIATAEIIWTQALLSELCISLTSIPTLYYDNISAYYMAKNPVFHARTKHIEIDLHFIRDQVLHNKLQLQYIPSTD
QPADILTKHLTSSRFLSLRSHLCLVPRPFSLRG
>Copia-60_MLP#LTR/Copia 55-4731 via tfasty with Copia-2_LBS, 61.2% SW:1319, 1 stopcodon. [Melampsora larici-populina]
MSDREDLDSLNQLPTPATTPAPFSNLDESDAEIQSESHSETSNSTVHSDQTTVPVMASVPIDTDTPAQKQSIKVNSILHK
ITINTKLSATNYNPWSDDVRFGLAAASYDQYLIVKDVPTVITDPEVILATKKCIFHWLLASMESAQSTRFISMISTFENG
IKNTPSSPFLLWKTVRDYHISNSESVKLMLRSDITDLSQGSTKDLLEYIDMFRAKIDAYLGANGEMSEEEQARQFVRSLN
RDWAEKGCDLLDAGHVKFRNLETELKKTYQTRKMFNSNRQQSSCTIEASEASQGRKNGRWQTCSKNRCLGREHPTKPHEQ
SECYHHPNNSSKMEAWKKSKKQAGEWIEYPRGGRGSSNSRGRGRRDAHFSxGSSNFTHGSDFPDSSELKSVFDGLRLEDC
EISYHVSVDGKFSCSAKPQVACVGDQCNSVALIDTGASHHMFHDASLFEVGTMIANEDPGAKLNLAGGGATLDIHSIGNV
NLLNSKGEDIKLKECLYVPDLSRNLIAGGRLIRAGAITKVLEDPNFRIDHGKKELFIGKFIGEGSMMYVAIRSLVSHEFH
QSSISKTNQFTILKLHYSLGHPSEKYLKRMWSLGYFNDVLPKTVTTKEFEIISKCPVCPLAKNHRLPFPFTRPRATNFLE
NVHVDLSGIIRTTAVNQEEYYILFTDDFSSYRVSFGLPNKSAETVFECFKRYIAFAERQTGQPLKMFSLDGGGKFINGLL
SPYLEELGIVARVTSPHTPEENGVAERSNRTINTKARCMLIQSCVPIRYWYYAVSYSVMLQNRTITTSLNLKETPQSVWK
KHKSSMKRFQPFGCLAYRHVRKEVRGGKFEPVSRPGVLLGATEDNHNFIVLDQESNQIHISHDVTFQPLIFPFMKDADKG
PDWIFIEDLPLDSAEEKQLVIEPNSTPNVLRYDSDEEDPVIQESLPPRITEVLNETPESELEPTDQIINQPQINEIPEKE
PVTKQPVQEQPRRSTRERQPVNRYTPSNSTSSNFVNIPMRSIVPKISQRYSESQHSYYCREAMRARAEPKSYKMAMKAPD
ADKWKEACDKEMKNIKEMGVWEIVDRPTNAPVVGGRWHFKYKINPDGSISKHKARYVAKGYTQTEGIDYNETFAPTGRLA
SFRIMVSVAAAKSWDIKQMDAIAAFLNSTLKEEIYLELPEGYDQERANGKVARLRKALYGLKQSARCWNEEVKDKFTQIG
LKQNPHDGCLWYGRDRNGMETLIYLHVDDMAITGDKIKETKELLKLKWRMEDLGPAHCIVGIEIHSTTDGGYSLSQPAFI
QTVLERFHYEDCKPASTPFPGGNKILKASDADVLEFNQSGLPYNSLVGSLMYIAQGTRPDVAYAVGVLSQHLSRPSKEAW
NMGLHVLRYLKGTQSLGLIYSSSNSQIEGNQSWSFPECHADANWAGDPSTRCSTTGYLFKLNGAAISWKSRLQPTVALSS
TEAEYKATTEAGQEVVWLRGLLSNISLTQESPTILCSDSTGAVSLTQKAIFHARTKHIEVQYHWIREQVEKGAIKMRHVN
SKNMFADTLTKPLHPGPFRELRDQVGLDVIHGHLKQGEC
>Copia-64_SB#LTR/Copia 620-4654 via tfasty with Copia-54_PTr, 2 frameshifts. [Sorghum bicolor]
MSQSEKINAIVINITLDGPNYLEWSFCVETALRGVGLHSHLTDDPPTLKSDGSNAAAVKSWEISDGKVMAAMVNSVKPTM
IMSLCKFRQAKPMWSYLKGRYVSGALQHTLMQQLHVIEQRDMSIDDYYSAFDRLMGSLISMVPQCTAGQTCTTLSFIEQF
LTYRFVMGLRAEFDSIRTRLLHTSTLTMAQALSELLAEETRLQSLSSSVSQPHSVLATSHRKTSTTREPCQHCGKNTHSS
DACFAKYPEKLAEFRARRAARGRGTSSTPRGSGGSGSVGSVSVAATSSTTAPSSSWVLDSGASFHVTSDSSSLVSCKPVT
DGACVQTADGTSCPITHKGSLCNTHFAVPNVSYVPQLSMNLLSVGQVTDQNCFVGFDDSSCFIQDRRSGQVIGTGHRRKG
ASSLYVLDTLRLSSFAKWHHRLGHLCGSRLSSLINQGCLGPTSIESSFHYKGCKLGKQIQLPYLSSASSSARPFDLIHSD
VWGPAPFASKGGHKYYVIFIDDHSRYTWVYFMKHRSQLCSIYQSFVRMVHTQFSTPIKVFRSDSGGEYLSDAFRQFLSSE
GTLPQLSCPGAHAQNGVAERKHRHLIETARTLLISSFVPSHFWGEAVSTAVYLINRQPSSKLCGKCPGEVLFGTPPRYDH
LRVFGCTCYVLLAPRERTKLTAQSVECVFLGYSLEHKGYRCYDPSSRRIRISRDVTFVEDRPFFYNPSTQPSYSPTESTS
FLGLPPISIDDNIPTPSPIVTPIPTPPPPPSHSFSKPPITQVFRRRPKDPNTLPPTSPTLAGPDDLPVDDSNNTNDESPI
ISNELQVGPRYNLRDRSTIHPEEKYGFPRVNATVVEPSTYQEACGIPEWQLAMSEELAALDRQGTWDLVPLPSHAVPITS
KWVYKVKTKSDGSIERYKARLVARGFQQTQGIDYDETFAPVAHMTTVRTLLAVAASSSWSISQMDVKNAFLNGDLTEEVY
MQPPSGVVAPPGYVCRLRRALYGLKQAPRAWHERFVSVIRAAGFSPSDHDPALFVHLSPRGRTLLLLYVDDMLITGDDKD
HISHVKQQLSAEFQMSDLGSSRYFLGIEVKQSSEGYYISQSKYIHSLIARSGITDNRTAATPMDLHLQLRPTDGVPLKDP
SRYRHIVGSLVYLTVTRPDIAHAVHVLSQFVCAPTSVHFGHLLRVLRYLRGTSSQSLFYSHNSPLQLHAYSDSTWASDPT
DRQSITGYCILLGSSPIAWKSKKQAAVSRSSAEAELRALATTTAEIIWLRWLLADFGISCDVATPLWCDSTGATQIAHDP
VKHELTKHIGVDAFFTRSHCNQKTIALKYVPSELQLADFFTKPQTREQHRLHLLKLNASNPPLPP
>Copia-65_MLP#LTR/Copia 153-4104 via tfasty with Copia-112_AA, 61.3% SW:1311, 1 frameshift. [Melampsora larici-populina]
MTRAAAKAFANRFASMTKDLPIKLSSIAKLEVDGSNFTTWERNITNYLLALIPDVADYLEPTMIPGDENYRPKYAEVVNS
ILYWTMHDELSRMVDSIEHPCGRLAELRKQFSKVSFAGRCAKLIELNDLKYDSGVGSLESHLNVLRKKKEDLKMIGLDLS
DEMFAIIVRNSMPADFPNVDAAFEDRIAQNPATVITTSDVQKAITAADIQYRRVKGPEALKVTTRIPPTSGNSSASTSFN
TYRPQRCYNCNGFNHFANQCRRKRQFQSREKASTSGSVKTNEVELEMAELDLQPWDDPKDVTVSDVRLNTSVDDAIFDTG
ATHHIFNSPETFMNLKKISPINVMVADGSTKAVITGVGSVRISDMDNPLLNCVLEPVYLCEGLRHNLVSGIAIHDQGINF
ESDKTGLKLRMKDGVMMKAKRVGQRWIFKVLKSSVETMAIGSYKLWHERLGHPNERVLRKMIADGACHGLPMKLGPTERC
EVCADAKSTKTNRIGPSFMSHDQPLSLIVADLCGPFQTKSVGGASYFLNIRDVHSTFIKVYPLNQKLDTIACVKRYIAEV
ERLTGLKVKRWRNDGGKEFMNQALETYLASLGIVLEKTMRYHHEQNGTSEQSQRTIQSIMRCLLFQEDIPKSFWGFAVAA
AAYLHNRTPNSNTNGKSPQEILFKEKPQADHLCVFGSWAFVHVPQEIRKKLDHRAVKCRFIGYPSGSKGWKFWDPKTNMF
LESAHAEWLEEEASNEFVKHSTDEWPIPDKTSGIQHLLNDLNISHEEEELLSVLEVAFELDDSKITEGVREQDVLVQHIQ
MLAAGIAHKIPSGFKTAMKSSEKDQWKQACDKEIEMLKRMNVWVEVALPEGKRAVSTKWVFAKKLDGDGEVKKYKARFVV
RGFNQEQGVDFHETFAPTARFASLLIILAISVCRGWIVKGFDVVSAYPHSPIDEEIYILAPEGYPCLREGDVLKLRRALY
GTKQAARCWWKFFSNVLSKVGCKYCVNDQSIYVLKSEGDVAIVWIHVDDGLVCSSSDKMINYLRESLEKFFELVWQDEVE
QIVGVKLVKKDDGLFLTQEVLATQIVTEAGFLMSSAETPMVAGLSLESAKDDEVALEASKYLSLIGSLSYLAVGTRPDIA
FTVNYLARFSAKPLSSHWTALKHLLQYVSGTRTNGLFFSRKDPNEFIEAYCDANWGGEFSRSTHGYVIFLFGCPVAWASR
RQSCVATSTCHAEYMALGTTARELVWILNVVEEMLGKRIKGKMLCDNTAAVKVAKDLHMTKRSHHVAREFHYVNELVFDG
IVEVLWIDGRNQKADIMTKPLGHVLFNFFKPLLCMNG
>Copia-64_ZM_gag#LTR/Copia 50-1933 55.4% sim to CPR1_gag, SW:742, [Zea mays]
MARRRSQKNKKTPPTNATQKEVTLEILFDDCSNYDSWSTSVINAFRTIDPRLEQIIDKSIFPSNFDGEINSEEDQRCYRL
NYLAFDILTNSLSKEDYRAFISNYDESIRDAHDIWTRIKSKFDESKHDSSFCASTSFGTCDTNPCKEEEENERWRPNDES
TSPKGLSSHFDSHMCCVANENDSGSTNEDEEEERSFVQLYARLSQEDKAVMLKLLERAREQGEARQRLEDILSMKMLRFD
ELTKEHEELKCSHVDLVQRYETISIEQDNALHCIAQLVNRNTLLKDQVEKLKVENLAFQEKYDMLLCSHENLMDDHIMLN
IAHEVVIENLKFQQPHSCTCVHIDTILPCANACCPSTSKSSFELEFAGTNDDTYQKLKEENERLKMSLTQLKGKCIAQPS
QDNRDHMVKKLETGTTVACTTSLEENVKDLRIAKKRKQKKKINTSSKSLNHASIKGNIQGNNQATLHTKKNKKCSECFEE
GHLIRSCPYIKNGLIINKDDRLCFKCSKKGHLIKSCPHLKQRGIGLEKKVFTNHVASNKQGKKKSSRLQKRLCYTCRKKG
HQCKDCPIGNNPTPSLSIVSHVTRQPKIATCARKVTSLPSANTKDFWVPRSLFTNLNGPIKRWVPKCA
>Copia-39_PIT#LTR/Copia 13-4031 via tfasty with Copia-4_PR, 81.8% SW:3773, 1 frameshift and 2 stopcodons. [Phytophthora infestans]
MSANTTTAFTTKLRKFDGTGYRVWARQLQLYLEVKDVxSAVLKPAPTLLQLENEESGQADRPLRQQERPLHQLEMQQKLA
MTIILAALTDDQAALVADLQHPKAMLGALQKTHRHVCDTTVxALKREYMSLYVDVGGDMLKHVRQTRLMLAELECYKVVL
TDAEKKSNFLQSLGPDWNGYIGSLESCASMEELLIKAAAEARRRTTQTQRGKRGGTQAVRSGNAFAAATHGKPGAKKGKC
FNCGKYGHFKNECKTKQIGGAFGHAATSGQDDEEGEESGFSFQVSSSAESDWIIDSGASSHMTGSRGLLNGLNKMDNDIV
VTTASGMKLSATHRGTAHLPLVSGSTCTLDNVLYVPGLKRNLVGLSKVGAAGLTATFNREHCVITSGHDKLLATRRTSGL
YVVSPLSTGNCAEVEYASGDQLDDLATWHARLGHLNARDLKALLKAGDVTTRSSQLLPCGSCAAGKLASVSFPEKKPRKL
KRGQVVIAIDYVGPMETTSRDGYTGMVSMMIEPYHLASVFPVKDKSSATHALRECIANLKVMIPSARVAVLKSDNAAEYV
GGEIADFCNENMIAQEFSTPYTPQQNGKVERSNQVVVEMARAMMQAAGLGKRFWSDAVLTAAYIRNRCPTKVLGDKTPFE
AVTGGAPVLSRLRVFGCDAEVLLPKSQRHKLDAKTIKAIFIGYEKSGAYRFWVPSGHGGSGRAIVSMTAVFFESSVPRNT
TVTLNGELPTQVYDEPVDGVAPSRYLEAIQEDIEMEDSDGSQLVSDADGSQPLSDLPERHLIDPRAEKQPTRRSTRIKKK
SVRRLDYEQSHNAEETALVSELSDPLTLQEAMARPDAEQWRQAINSELDSLRRNGTYEEVFAPANVRPVQTKWVFRRKTL
PDGSLDKYKARLVAKGFTQQYGVDYTETFSPVVRHDSIRAILALAVQLDWDHLQLDVQTAFLNSNLAETIFVTPPTEGND
KTVWKLRKALYGLKQASRAWYETVTKFLCETGFVQCQSDSCVLVKRTTDSIVIVLLYVDDMLIFSNLASELAAFQASITS
RFAINKCDASSSFVGMELGWNKDGDVLTISQQKYAATVVKRFASHGDRSQPRTPMDSNFQRQVADDTEVIDESIRPEVGS
LLYASTVSRPDLATAVRLIAQETEQPTRTVQDAVRRVLGYIARTADMGIVYRRSSQRKLQLEVYCDAAFACERERKSATG
FVIFLNGCCIAWGSKKQPIVTLSTTESEYVALAHGAKECIGLKQLLFELGFDVGKVIVHEDNQAAQHVAEGKGVSQRSRH
IDLRYHWIREQVQRETIKIVYCSTAVMVADMFTKPLPQAKFSLFVTRLGMCRVGVSERAT
>Copia-38_MLP#LTR/Copia 587-5347 via tfasty with Copia-75_MLP, 60.7% SW:1882, 2 stopcodons. [Melampsora larici-populina]
MNPTDATSESKPSESTSHNPSSQKTQLSLPKNSIPFPSKEFKMTSNSTDQKFSLDSYSNVVKLSTGTFNDWKLRLSTALG
AQRLSKYILQDLKAPTDPDELEEYETYSLRALAAIHSTIDAENFQVIQSCTSPREAFKALCQHHDDAGGLSTAHLFSDLM
TLRMNPDDNLSDHVSKFRKIHNDLLSNLSSTPDFKISEPFIAIILIKSLPSEYTPLVQSLLANFETLTLPRLYSLLKIEA
TRASSTNPSDTALAASRPNFKRPGKKSDRPTNHNSSLKCSLGHAGHNDENCRTRKYRAFLEYEKNQQSSSSNHVNVSAQL
SQSIPEADEDVSYWELAFSASTSSSAPIICNTGATSHMFSDKTLFSDLQHTRPTRIGVASQDGAIWAKHKGTVRFESIIL
RDVLYSPQLTGNLISVGRLCDDGFNASFTKTLGVITDSSGKEVLRMSRNKQTNRLWTPIVKSTHSTAMFTYTDPAELAST
WHRRLGHLHPDAVIIFLRRHKLISLSRKDFLPCDSCAMGKLKQSPSTHSFHRSPGVLNLVHSDLIGPISPATKTGLKYIV
TFIDDHTRYSMVYLLKSKDQTFEAFKQYKALMENKCGSKIKKLKSDxGGEYSSNKFLNFLQQEGIEIERGPANRPTADSV
LERYNLTILSKTRSQLIQSGLPLYLWGELVKYCCIQINCSPTAALCHKLPIEVFESLLPGHVHPFDVDRLKPFGSLCFAV
DRNRKSKMAPIARRYIFLGLEDGARAARLWDKASGRVFVTGDVVYREGVFPAHHPTLSPNVKDEFILPEYPDEAVTSPGP
SNIPEDSSADKNNPEEMSPIQDESKSLHNTPSIHSLESDGSSSAPSFRPSKIIPLSQSIHAPRPGTSSQPIPAEEPNQNQ
KITPIITDLRLRRQESLSPPSSHSLASSVNQSSGVSSNDQPDVTFPASNRSPSIQSPVSVHETIRSPSLSPVPSAPTSDR
QLSKSPSPEVQIQVTSPAKSPSPPARLPTPPPCIPTPPPVAPTKLAVKTDPPPMRRSSRTRQAPDRYGFLSQSNVAVSTS
PMLITPHxTFIPNHYGFSATNGTDPDSPTYSQAMSGPDKQAWVHAMQQEFDSLTEHGVGKLVEPPPGANVLGGMWIFNKK
RDEHNRVIQFKARWVVLGNHQIKGVDYNNTYASVGKLDSLRILLALATVKTNRRTRGRMKVRQFDVVTAFLNGNMKDLVY
AIQVKGFENPTLRHRVWQLIKSLYGTKQAARRWQQHFGATAAGFELHATTSDTAVYVLKSTLGLLILHLHVDDLLIFCDN
DDLFLKFQTFINSKYQLKWTDKPTLYLGIKLDISQDGSVIKISQSHYIEAVLERFAMVNCKPSKSPLPQKLVLTPGTIDE
IEEAKNIPYQELVGCLQWIATCTRPDIAYAVSQLSKYNSAWTITHWTAAKHLLRYLKGTQDLSITYSGRIEEPQAYSDSD
FSQCPLTRKSVTGYVVTVANGAVSWKSQRQSVVALSTSEAEYLAATECAKHMSWVRSFYFDIMHQLEKPTPFYIDNTSAI
FTATGDGIKSRSKHIDRRFHYIREIIESNNLIIHHIPTEEMLADHLTKPLGPIALKHALQLNHMIEM
>Copia-40_Mad#LTR/Copia 338-4857 via tfasty with Copia49-PTR, 1 frameshift and 4 stopcodons. [Malus x domestica]
MAEEKGTGSKIVPVAAPIMVQSENSSFNIGMVLDEKNYDLWAPLIQIHIAGWKKMGYLRGSIKAPNVDDPKYDDWFSEDQ
KIKSWLLSSMKPEIMKRYIRLSTSKEIWDSLKAAYFDENDEARIYSLNQKASRLRQNGRPLATYFGELTEIFQELDHFNK
VSMECENDIKVFQKSTERQRVYVFLGGLDDGFNQVCGEVLRKDPLLGLQASYAYVRREADRNEAMKTEVDKSELDALATK
ARGSSFGSNREGSQSWPGQTRPSQTSRDRPQGKCTHCGMTGHSKSRCFELIGYPENWDKTRDPRWNKSRASVAETKNDLD
QIEDKASAMIAAAGSDGKALSTSTSVMNNTWIIDSGATEHMTCDSKQVPSLKTSIHNRVNVANGNVVPVIGEGTVSLSDT
MKLDTVLVVPSLNYNLLSVAQITLVLHCLVIFWPHFCVFKDIRTRKTIGYGIRRGKLYYLELTTSSSSLLTQALSVDDSQ
GDINKVSDIWMWHRRLGHASFSYLHKLFPSLFVKTDVSQFKCDVCEMAKSHRTYFPPSFNKSTVPFMIVHSDVWGPxKIA
TLGGAHWFVTFIDDCTRMTWVLLLKSKSEVSSAFxRFHKMVAVQYNRNIQVLRSDNGGEYVNMELRSFLELQGIVHQTTC
PYTPQQNGVAERKNRHLLEMVCASLIAAHLPLHYWGEALTSAAYLINRLPSRTLNFHTPFQALTSQTSSPPTPNLPPRVL
GCVAFVHLHPPQRHNKLEPRAVRCVFLGYAATQKGYRCYHPSSKKMFITQDVSFHENEMFFGSPASSLQEEYRNSEVLTR
DNSKVLSFDELHEEQPYAASGELQPYTAPRELQQPMAFEHGQQPCFGHQPTEQLTDEGQQTLQVDDQSTGPMRFGLDDDQ
QPTSWNGTEQQLQQVSRDFSPGVISGSSWNSPSDNSHNQSSSTPDAPPLRHLPERINRGIPKPTYEADPKCKHKYSVSEP
NSDSRVKYPLNNYVSTSHLSKSNKSFVYQLSTVSIPNSVQEALADSRWKDAMNEELRSLKKNATWEITDLPAGKKPVGCK
WVYTVKYKADGTVDRFKARLVAKGYTQKYGIDYTDTFAPVAKINTVRVLLSLAANLDWPLQQFDVKNAFLHGDLTEEIYM
DLPPGWSDPDIRKQKVCRLKKSLYGLKQSPRAWFGRFTKSMKAFGYRQSNWDHTLFLKHRNGNVTALIVYVDDMVVTGDD
PVEQAALKKYLSTEFEMKDLGSLKYFLGIEVSRGKSGIFLSQRKYVLDLLEETGMTACKLVSTPLAExMKLGIDQNQVLV
DKGRYQRLVGILMYLAHTRPDLAHALSVISQYMHNPGxQHMSAVMRILSYLKGSPGKGVLFRKNGHFRIECYTDADWAGS
TDDKRSTSGYFTFVGGNLVTWRSKKQNVVSRSSAEAEFRGMALGICELLWLKFLLQDVGAKHGQPMRLFCDNKAARDIAH
NPVQHDRTKHVEVDRFFIKEKLDSKVIEVPPIGTNDQVADILTKAVSSDKFSKFLDKLGMCNIYAPT
>Copia-41_Pru#LTR/Copia 189-4643 via tfasty with Copia-12_Mad, 76.7% SW:4051, 5 stopcodons. [Prunus persica]
MASSSSIKIDGLLSMVTIRLSDNNFLKWSFQLESVLQGYELFGYFDGSIVQPPKFAILDEEGVTSQVTAGYKDWLKTDKA
LLSLLIATLSDEALEYVIGTKTAREAWLNLVDRYASVSRARINHLKTELQTAQKGRDSFERFLLRLKHVRDQLAQAGVKV
SDDDFMIATLNGLPPEYDMIKTVLIARDSSISLKDFRAQLLAAEQTAEARILTHSAMLTSHNPVASSSNGYAPPMSPSLS
NTTGLLPTPPSSTVAFYVSNAHNRYTSPRGVSGSSNSLMSTGSTSFGRGKFSNGGFGKPISASSHMSGSQVSSSKFGSNS
FYRSNIVPECQICCKRGHTAANCYFRHDASPAQGSAQVIECQICGKKGHGALDCFHRSNYSYQGLPPSPKLSAMTAQSSY
IPNQVWIADSGASHHMVADVSSLHHVTPCESAKQVTVGNGKGLKIQNIGTTSLSCNSSSLHMPSVFHVPKLSANLLSVNQ
LCKDNQCLICFDASVFYIQDKRTKTILLQGLSHNGIYPIPCTLTSQSKAMAFLGQKASSSLWHRRLGHPTNAVVxLTLKN
SQLESLNDDSSMICSSCLHEKMHMLPFTDTHIKTRIPFSRIHSDVWGPSHYRSLDGYRYFVSFLDECTGYLWLFPLFNKS
EVFSKFLHFTAYVQNQFKATIQCLQSDGGGEYSSHLFSKFLSSKGILHQVSCPYTPQQNGMAERMNRHIIETAITLLTEA
SLPGKFWFHATAHVAYLINRMPSSTLDNQAPFFRLFGTDPKIHSLRVFGTAVYPYLRHYNVHKLQPRTTxCVFLGYATGY
KGVIGYNCATGKCVISRDVIHDESVYPFVPSTTPQQSSTSSSVVNTSPIIISLPSQSHPDSECAGHDLSGDGVFLSSISV
PAQSIPRNGSISIVSPSLQYENDQHVFIDQQLQAILPYEAFSPLPPSPNPEPVNTHAMQTRSKSGIVRPKQFQEYQGYFT
CLTASVELDEPCSYKVASYSAEWRRAMQEEIDALQSQGTWSLEPNPGNKNIVGSKWLYKIKKNSDGSIARYKARLVAQGF
SQQPGSDFGETFSPVVRHTTVRLILSLAAMNHWSLRQLDVKNAFLHGDLEEEVFMRQPQGYEDPAYPEYVCKLKKSLYGL
KQAPRAWNAKFTGYLPALGFKLSHSDPSLFVKHEGSDVIVLLLYVDDIILTGSNANVVQTVVDDLSSVFEMKDMGRLAYF
FGLQITYPVSxGLFVSQTKYAKDLLHKAGMQSCRACSTPCKPHNQILTDSGEPLSDPTMFRSVVGALQYLTFTRPDLAYA
VNTVCQYMNSPTDVHxLLVKRILRYVQGTMNFGINFTSTSPTVSDPWQLSAYSDADWAGDINTRRSTTGSVVFxGNNPIS
WQSKKQGSVSRSSTEAEYRALANTAADIAWIRQVLQDVKFFLPTPPLVYCDNISALTLSSNPVYHSRIKHLDIDYHFVRE
KVQKKDLLIQYVPTEEQVADVFTKGLHSPIFSRHCNHLRLGNVTG
>Copia-40_Pru#LTR/Copia 42-4549 via tfasty with Copia-5_Pru, 78.9% SW:4373, 3 frameshifts and 1 stopcodon. [Prunus persica]
MAPDNDAKPVDREKSSSTTDRDAYDSTDPYCIHHSDHPGMVLASMPLTGDNYSTWSRKVRISLSAKNKTGFIDGSIVKPS
LTKKPTEYQRWQRCNDMILSWILNSLDPDLSNSVIYAETAHEVWIDLKERFSQSNAPRIFQIQRSIATHTQDQMPLATYY
SKLKSYWDELGSYNDTEVCSCGAKKSLAEREEQQRLMQFLMGLNESYAAIRGQILLMEPLPSVRRAYSLLSQEEKQREII
TTHANTESMAMLSIHNKKGGSSKPAYQFRSQQGYHSQQGQNSQLRSSFRGSQKETRRCTHCNGDTHTVDTCYYLKGFPPG
HKWHNKEVFLPDRGSSSHQGNQRKSHAANNVQNSDSQVHHLQSIAPHLTLDQCQQIMGAVGKEDVSQTQVNFAGLSSPSC
LFSQKQSNLSHAWVIDSGATDHITNSQDFLTDTSPSSMSPVGLPTGAKAPIKSTGKITFDGNLCLTDVLCVPSFNVNLMS
VPKLTESLNCCVVFFPNFCYIQDLVTKKMIGLGRRHGNLYYFDSNYISQKPPSSSHHVLSRQNLWHLRLGHPSDARLRIL
AQHESDIFFSQHSCDFCPLAKQTRLPFTLSSISSIASFDLIHCDIWGPHKIPSHSGARYFLTIVDDYTRCTWVYLMQHKS
DTQGLLKSFFAFVSTQFNKTIKAIRVDNGGEFSSLKTFFADLGVVYQHSCVSTPQQNGVVERKHRHLLEMARALRFHAHL
PLNFWGECVLTAAYLINRLPTPLLTGKTPYELLFNHPPIYKHLRIFGCLCYATNLHPSHKFDKRARKCIFVGYPFGQKAY
RVYDLETKKNFSSRDVIFHENVFPFANQHDVPTIPVLPLTPNDYDYEPVHISDPLPTSSSKPNPPTTLDMHPPSPNTHSG
TPTPPLPNTQPPSPRTQSSPNTHTQFSPNTQSNISPQPSPPLSPSHDRQPPPPLxHSERLKQPSVLLRDYHCYTAMSPYF
DSSSSSNTKGKGTRYPISQFLNYHNLSSTHKSFVASISRVVEPTTFAQASTDPLWQEAMDKEIQALEQNNTWSITSLPAG
KHPIGCKWVYKVKYNPDGSVERYKARLVAKGYTQQEGLDYTKTFSPTAKLVTFRCLLALAAVRNWPLHQLDVQNAFLHGD
LDEEVYMLPPPGLRRQGEHLVCRLHKSLYGLKQASRNWFAKFTNALQDAGFVQSLADYSLFTRYHDNSFTIILIYVDDIV
ITGNDPKAIQSLKDFLHARFRIKDLGNLKYFLGIEVARSKKGIFISQRKYSLGARPYSFPMEQTLRLNPTGGKPLQDPTR
YRRLVGRLIYLTVMRPDLSFAVHVLSRFMHEPHQPHLDAALRVLRYLKGSPGQGILFPTTNNLKLKAFCDSDWASCPTTR
RSVTGYCTFLGDSLISWKTKKQNTVARSSTEAEYRAMADACCELTWLRYILKDLGIQHSEPAVLHCDNQSALYITKNPVF
HERTKHIDLDCHLVRQNIQSGLVSTAYTPTKMQIADIFTKPLGKVPFGSLLGKLGVYNIHSPT
>Copia-38_BD#LTR/Copia 59-4522 via tfasty with Copia-44_SB, 2 frameshifts and 2 stopcodons. [Brachypodium distachyon]
MDFFSDSSSSAGGDQTTNPFTSPPPPPPPPPSLPPIQPLPASSLLHLPIRSLVPDVLDLEKGNYIRWSRFFQSVFRQFGL
RDHVNGSVLASDRLQDAKWMQSDFCIVSWLYSTITQEILDIVMQPDDTALHLWSALADLFLDNSLxRQVFYLQEFHSLYQ
GDMSITEYCSRLKTLADNLRAVGAPVSDRTMLANTSRGLRGDFSNAVSNLNLLTTPPTFQRARSYLLQEEKRLANTAKME
NATALYAGGKQAPAPQPVAAALAPAAPSSSKGNRQKKKGNNDVRQRGNNSNSAAPATSAPPWVPSTYNPWTGVVQAWPFP
PNQAPKAGPSLLGPRPGMPLPHAFYAGPLPTYAPPPVPPPSAPYQPPHQLDPALLAALHSAPARDFNNPGDWFLDTCAAS
HMASNPGTLTVRSSSSLPSRIVVGNGASMPITHSGHTVILTPSSSLQLHNILVSPSLIKNLISVRALTRDNSISIEFDPF
GFTVKDLHTRVALFRSDSTGDLYPLRPSPPCSATPQSFSVTVDTWHARLGHPGRDVQQRILQFFPFTCTPSSSHSCHACR
IGKHVRLPFSESLSISTVPFQLVHCDLWTSPIPSNSGLKYYLVVLDDFYHYTWTFPLRRESDVPTTLINFHAYVRTQFNL
PIQIQCLQTDNGREFDNGVPRSFFSSQGIILRLTCPYTSQQNGRAERVLRTINDSVRTLLFHAGIPPRLWPDALATSTHL
LNLRPTRARAHATPHQLLLGTAPSYDHLRTFGCLCYPNSIATAPHKLAPRSQACAFLGYPPGTKGYRCYDPSTRRVLTSR
HISFDETRFPFQELTATRSSTAATPACPAPLFLPQLVPIPVAAAPGNTAVEAPRATSPSSPAVVRNEPTAAMNLSSAAMP
AAAASSSTAAASSSAAAGPSPAAAAASSQPASTSIAAQSSYPAAGLSSSEDEQPPSPPGMVTRARSGIPLPSRRYNSDEY
VCAASTSAPSPLPSSVRVAVRDPHWFAAMxEEFDALQRNRTWTLVPQPAAANVISGKWIFRHKLKPDGTLDRYKARWVVR
GFHQRPGVDFTDTFAPVVKPGSIRMVLHLAACRRWPVHQLDVKNAFLHGHLAERVYCQQPSGFIDTAHPDHVCLLSRSLY
GLEQAARAWYQRIAAFLVRLGFSATRSDSSLFVLHNGTEQAFLLLYVDDMVLTTSSTGLLHRVISALQGEFAMKDLGPLD
YFLAIRVHRSATGFFLSQEQYAMDLLDCAGMLNCKPAPMPIDTKPKVAASSGTPASDASFYRSIVGALQYLTLTRPDLQY
AVQQVCLHMHQSCDVHWSLVKRILRYVRGTVRHGLQLFVQNTATDIIAYSDADWAGCPDTRRSTSGYCVFLGDSLISWSS
KWQPTVSRSSPEAEYRAVANAVAECTWLRQLLTELRCSPDKASVIFCDNVSATYLSANPVDHRRTKPIELDIHFVRDLVT
VGQVRVLLVPTAQQLADIMTKGLPSMAFADFRSSLCVTNGAAETAGGC
>Copia-36_DPu#LTR/Copia 39-4273 via tfasty with Copia-13_DPu, 68.3% SW:2590, 4 frameshifts. [Daphnia pulex]
MDGTFNPMFNPRDISHIDKFNGTNFQQWKYGISLILDQYEIKDTAEVIKSHKVLSKNHAHSNESHMILQGFDVSPNPTTN
DAGDVTNTEEIYQWSRKDLMAKQYIYSTNDSERQRVLMNCKTSNEMWLKLTTQYQQNASDNRHLLRNEFYSYRKQEQPEF
LNNNEFSLKLLPHYRYRPGDTIMAHITAVETLAGQLIDVGVPVGDEDIISKIVCNLPLSYRTFQTTWASTNPAEQTRALL
TTRLVNEERAIQRHQQAQESSGATNSTSNNEALYSNSSQSQRGRLNRRDSGRLHNRPRQMQGDRPRCTYCTLPGHKAEEC
RTKKRDERNSERQGHGDRANTAQTERNATETEWALISAACLKACKKGKWYADSGATQHMSEDRSAFNNYQAIPEGTWTVD
GIGNTKLQVVGKGDIQVESRIPGIFHTGTIKNVLHVPHLGVNLISIAALTNLGAEVAFTANKINVTLNNQIVMTGERSGM
SLYELEIQTAPTKMSQSAEKATTSNANAVALKAASFNTWHKRLAHVNYQTIQRMMRHEAVEGITLKENSEIPKEICQGCA
LGKMHKLPFLPGTRKVTEIGELVHSDICGPMQTPTVGGAKFFVLFKDEHSSYRVAHLLKHKSEVPDRFQEYVHTLNFETG
KKVATLRSDNGGEFTSNAFESWLKENHIRHETSVPHNPQQNGAAERDNRTIVESVRCLIHERNLPLWLWGEALMYAIYTL
NRTLPQNKKITPYEIWHNKKPNVAHLREFGVKAYAHIPDAERQKLDAKSKEYIMVGYAETQKAYRLCDRTTRKIHISRDV
IFEEDTTVSSTHLEETEPFEPLTPSTNDKEKDQTEQPKTTKRSSSRQHQPKRLFPMEQGSYDTKKRKEKDSATTTVSLKS
LSLNSYVEPNHYQDALSSPDAAMWKEAIEDEIQSLIENETWELAQLPKGRSVIDTLWTFKKKIGIDGEKDRYKARYCAKG
FTQLKGIDYQETFSPVVKHTTLRTMLSIATVLDLDIIQLDVKTAFLHGEIEEETYIKQPEGYVIPGKENEVCRLKKCIYG
LKQSSRVWNQKFHKFLTSFGLKSTAADPCLYTCQDKDGIILVAIWVDDGLVCGSKMESINKVIEHLSVHFKMTSKTAKHF
VGLEITRDRQHRKTFVSIPNYIEKLQKFNMASCSHKVTPADPHTQLSIKMCPTEDQEKEEIKKTPYREAVGCLIYAAITV
RPDISYAVGQVSRFCENPGRPHWSAVKHILSYLAGTKNHGICFSDGNGERNTLLGFCDSDYAGQVDTRRSTSGLVFMANN
GPISWGSTRQTCIAQSTTEAEYVSLNEAAREAVWLRRLMNGVSCQPLQPTKLYCDNQSAIRLAGNPELHKKTKHIEVKYH
YVREQQQKEEIKIEYVPTNQQTADILTKPLAGVTFREMRERLGVKEAPITF
>Copia-33_MLP#LTR/Copia 44-4561 62.4% sim to Copia-14_SI, SW:1441, [Melampsora larici-populina]
MSDEGITVPIDQLILASPAHSLSSSEQDFQSPSESESLLDQTFIQSLLPTMSTSIPPNAGTTTVTTINPSAFGSRRYQMA
SSMVNTLSKVTITEKLNDTNYLNWSSEILTGIKSLSFTSFLLSDKDEPTDDADLQLFNEVVRESLMTWMVSKLDQPNRNR
FQPRITVETAIGSDFESAPSKLWILIRDHHSPRTSAHQMLLRRLLFNLAQKDSSLPSHMDEFNRLYTAYMAAGGKIGNVE
LGQQLLMSLNSDWTKVAEDIADSDTFEYDDVVKALKVRITNRAMLHPALNLPSLSVPQANAASPMRRRQGFVQTRCSPTK
CLSLTHSEADCIRNPRNINKYNAWVESKKARGEWVDRSPNSPSNRSSSSKSVTASASLVIPDPELPSLSSLQAALERSEF
SASASAVYIVDPKASIENEHFGIVDSGTTHHMFKSEKYFNKDTFTDLSSSNEQVGLAGGSSTLQIKGRGDVTICGPTGDL
TTLTNCLFVPSLKQNLIAGGRLFFEGWITDRREDGSFVIQRNGVTALAGTIHPNSMLLQLSAVRTIPSEFSTASAITDKT
TESLHLLHHKLGHPNFTYLKQMVKGDVITGLPLSLSKVVLPESLPCNSCDLSKAHRQPHSDTRTRALQPLDNIHIDLSGI
MRTPALCRSHYFILFTDDHTSYRHITGLKSKEKDEVHVAIHTYLSLVERQCDRKVKCLTLDGGGEFLNDVLLPYCQREGI
YLRVTAAYTPEENGVSERSMRTVVCKGRAMLIEANLPIRFWMESVKSAVFLNNRTTTTTLPKNKTPYEMWYHRKPDVTHI
KPFGCLTYVLIRKPDRESKYGPTSEQGVLVGHTEHNRNYRVFMLNTSKIEITHDASFREDVYPFTRLPAFDISHLTTNQE
EVSLLELNPNPTPILTPNDDEENQQLVVIEQQPAVIEPQAVIDPNPPPALPRRSERVSRPVDRFVPNSNLAFWEDDCLIS
KGDVCAYAFAAESTVRLVSEPNSYKQAMKSPSRDEWIKACAKEMDNMSRKGVWKLVDRPKDAPVVGSRWHFKVKHNPDGS
VRKHKSRIVAKGFTQTFGVDYEQTYAPTGKPASYRILVAIAAYFGWDIHSMDAVAAFLNSALKETVYMEQPEGYVLPGDE
DKVCLLLQALYGLKQSAHEWNEEFRIKLIKAGFKQAAGDECVYIRQRSKSDIIIFYLHVDDMAITGPISSIILFKQEVSN
FWEMDDLGVATCVVGIQTMRLSQHHYAIHQRAMTESLLMRFELSECKPVSTPVQGGLKLLKSTPEEAANFATLNLPYRSG
VGSLMYISQCTRPDIAYAVGVLSQHLDTPCQRHWDAFRHVLKYLRGTLHLGIHYHSQDNQLFRMQSSWNVPMTNVDSDWA
GCKNSRRSTTGYLTTLFGGAISWRSRLQQTVALSSTEAEYRATTEAGQEVQWLRNLLRDVGFQWNGPVSINCDNLGAIDL
SSNAVNHGRTKHIDIEHHWIREQVKQNKIILNYCKSEDMTADLLTKPLHPGPFWEHMKSVGLKKCP
>Copia-37_BRa#LTR/Copia 26-4209  [Brassica rapa]
MDLEPYDPPRLNIIHCVTVKLNEQNFFFWKRQFQSFLSGQRLFGFVTGTIPQPVPTIMAPTIHGTSTPVPNPDHEMWFQT
DQVVQSWLLGSITDTLQSMVVNCTTASEIWSTLETHFNRPSNSRMFELQHKMQTLSKDGKKMFDFLHEVKALSDQLASIG
APLTEAMKIFSALRGLGRDYEPIKTAIEGSIDTVPPPTFESIFPRLVAFDDRLQGYNSGQEVTPHLAFATVRTNQQGNYY
SSRGRGGRRGRGRGSYSTRGRGFHQQISSSFEGDTRPTCQICGKPGHHALKCYHRFDSSYQLEEVPQALAAMRITEVSED
SGSEWYPDSGASAHITNSTRNLHQSQPYHGSDTVMIGDGSYLPITHTGSTVLASSSGKLPLKDVIVCPQITKSLLSVSKV
TDDYPCSVKFDNVGVSIKDKNTKMVLTRGRKDKGLYRVENKPSIKALYSSRQHSASDAVWHRRLGHPHQQVLQHLSASSF
IKISSSSKKMCSSCQLGKSSSLPFQSSSYVASRPLEKIHCDLWGPAPTTSVQGFRFYVIFIDHWSRFCWLYPMKYKSDFL
SIFCKFQALVENQLRCRIGTFQCDGGGEFISSAFLSHLQKDGIRQQISCPHTPQQNGLAERKHRHITELGLTMMFDSKMP
LRYWVEAFFTATFLSNLLPTTSLPNHQTPYQKLFGKEVNYSFLRTFGCACYPTLRNYASNKFDPRSLKCVFLGYNDRYKG
YRCMYPPTGRVYITRHVIFDESDFPFENAYKTSHPSVLTPLLKAWQMSFDSPTPSETMPPKAAEVDQAVHQAAVPLFTEN
DFPPLPSLQQPASVEISSVVSSSSSSSSVPASSPVPVPTPAPEPVNQRHSMVTRSQVGTVKPNPRYALLTQKVSIPEPRT
IAEALKHTGWRNAMGEEFDSCKETNTFTLVPRTEDMHVLGNRWVHRVKLNADGSFKKLRSRLVAKGNEQEEGIDYLETYS
PVVRMASVRTILHMATVLNWEIRQMDVKNAFLHGDLQETVFMKQPAGFIDQENPRHVWKLNKAIYGLKQAPRAWFDKFSS
FLIDFGFCCSKSDPSLFVYKTAQDIIILLLYVDDMVITGNSSACLARLLQQLNQEFRMTDMGELHYFLGIQVQKHQKGLF
LCQQKYAEDLLAVAGMTECEAIATPLPQQLNRVEDKSELFSHPTYFRSLAGKLQYLTLTRPDIQFAVNYVCQKMHSPTVS
DFHLLKRIIRYVKGTLTMGISLHKDTDFTLTAYSDSDWAGCSSTRRSTGGYSTFLGKNLISWSSRKQPTVSKSSTEAEYR
TLSETASEITWLSSIFRELGLPLLTTPLLLCDNLSAVLLSANPSFHSKTKHFALDYHYVRERVALGALEVKHISNQHQIA
DIFTKSLPHEAFSSLRSKLGVAAIGAQSLRGPIIT
>Copia-37_MLP#LTR/Copia 372-4866 via tfasty with Copia-6_SMo, 65.0% SW:1421, 1 frameshift. [Melampsora larici-populina]
MSSEDADIISADDSQDNSTVTGGSSTSSSADTFGTVKQSLTESVSADNPPGQSRTLEPSSSVMAESSDSRVFGDAIQKYS
QIMTNALSKYKVSDDLTDENYTEWSQSLMEVFRSLEFHHYVKVKNYRNQSLSAEEHEKTRFNLTTYILNRLDLINKVRTR
NRLTDPEDPSEILYDPFLCWSFLKEYHNRVSEDKLEAVTKALYACQIVKSDTLSSFIDKFENLIREFYRLKGELSDVQSA
RMLLSAIPSLSIKMKEYIHNTVVPLTREGVATYLRKYEERHGWTCSAIREANAVSIRPNKKVSGECTPDECVGPHLSKNC
WSKPENADKRLAFLAKICGKSGGGNLNSSTPITQESSVRGAKKVFDSSVNNASASMAFLSLNVEFTEDVKDNSSITSVSA
SPSEFDEDPDIDASVSAALSSSRDWALHDTGATHHMFKDVKFFDQTTLVKIEDTSKRLKLAGGDVSLAVHSRGVTKLLAG
DDSVFELKNCLYVPELTRNLVAGGLLKKLGVRELFHDSKNFSLVLNGLAIFNGFISDNNLMFILLEPVSGSHLSSIGASI
TEVSSSLQHRRLGHVSNKYLKLMAKHESVEEFNYSHYTKCASSSSSSSSSSSSSPNPARARTFLENVHVDLSGIIRTTGI
NNENYFILFCDDYSAFRHIFPLQDKTKEEVYDVFMSYIAVAERQTGCPLKQFTLDRGSEFLNNLLGPKLKELGITLHLTS
GYAPEENGVSKRGMRIVNTRARSMMLESSLPIRFWYYACSTAVFLTNLCVTATLEGGKTPFEVWYFRKPSIHHLRVFGCQ
AYGLIRKELRPSKFSPVSSEGVLLGFENDNFNYKLFDLASKKVYITHHATFNEEHFPFKTLPSVPSAVDNIPERHPVQVR
FFDDDDDLLDDQPVPASTLIDNSHQSSEPNVVPTVQPVTKPVEAPRRSNRASKKVHDTLRGMCSGAEFDDDFITESFFAC
LPPECNLAGVLSSPDIPKSYKRAMASVDAKLWKAACDKEFNSLRDKEVWELVDRPKDKNVIRGLWVFRKKSLVDGSVKFK
ARFVAMGNTQIPGEDYGETFAPTGKPGSLRILVALASVNGWEIHQMDAVTAFLNGLLEEELYVEIPEGYRHESTIGKVWR
MRRSLYGFKQSPKIWQDDVESFLIEVGFEQCEIDHCIYIRSVGNLFTAVYVHVDDLAITGNDITKFKSQIAAKWEMEDLG
IAHTVVGIQINRLNHLTYSMSQQQYTQTVLKRFNMTDSKPAVTPLSPNVKLLQSTEEEAEEFSKTKLPYNSVVGSLMYLA
QCTRPDMAHAVGVLSQHLKSLNKLHWDAAMHVLRYLSHTINIGIVYSGNDSNIVAGQRSFECPVSHCDADWAGDVNTRRS
TTGYVFVLAGGPISWRSRLQPTVALSSTEAEYRAITEAGQELLWLRNMMAKFGFIDPNPTVLHSDNMGAIHLTSKSIFHA
RTKHIEIHYHWIREVVKKGELTIKHCPTHLMVADLLTKQLPKEQFSNLRRSLGLRFLG
>Copia-37_GM#LTR/Copia 129-4344 via tfasty with COP3_MT, 79.2% SW:4110, 1 frameshift and 7 stopcodons. [Glycine max]
MAGNDSTSKSTFYPTFSVSNIKNYIQITLEMENVHYDSWVELFLNTANAFDVADHIIPPKDATVKKDAQWSRLDAIVKQW
IYSTISIDLLHTILKLGATAQEAWNRLKDIFHDNKNSRAVYLEQQFSQIHMDNYPNASSYCQALKLIAEQLSNVGAPVNE
DRLVLRLVTGLSSGYDSLATIIQQLDPLPSFYKARSMLTLEETRRNKNTGAKSALLHAQSDVSSAAPNRSPDVAPSRSNN
RNTDGRGKQYRGKGNNNNKGNSYKNSFDNNKNNSGTNNRQGNQPTSWTWVPFTPPSWPQQPSWNPPPCPYPTTGxVPSAT
GHGVVVLGPRPHAFLAQNQTLGAPQGALVPTDIPATMQTMSLQQPDDNWYMDTRASSHMTSNTGTISSYFNLSTNNKIIV
GNGIEIPILGCGVKQLQPPSPPLLLKNVLHAPHIIKNLVSVRKFTSDNNIYVEFDRFGFTMKDMQTRKPLMRRNSLGELY
PLLPTHQIESSTPHALTTISASTWRNRLGHPGPAIFSVLRNNNFISCRSVSKHFCHSCQLGKHTKLPFSLSTSSTCYPFD
IVHSDLWTSPVVSAMGHHFYVLFLDDFTNFLWTFPIKHKSEVFNIFTKFHTFITTQFNCPIKNLQCDNSREYDNSPFHEF
FKKHDMTFRFSYPHTSPQNGKAERKIRTLNNMIRTLLLYANIPPSQWHDALSMATFLHNILPSKSNKFVSPTSSLYLRYP
DYNSLKTFGCLCYPHLPSSTTHKLDARSTPCVFLGYPSHHRGFLCLDISSRKIITARHVTFNESIFPLSHNPPTLASSYS
FLDSDPSPYMTHIINSPLASNDxTIPPPTSPTTSPTTSPMAQQVTTLEPTHQTVAASPVPSPPMRTRAQHDIHKPKSIFD
LSVTTSVSPIPKSPISALHDKNWKQAMTNEFDALIKNKTWVLVTRPPDVNITRCIWLFKHKYKSNGDLERYKARLVVNGR
SxxVGIDYDETFSPVVKPATICVVLSIVVSKNWTIHQLNVKNAFLYRHLSETVYMHQPPGFRDRNHPDHVCLLKKSLYGL
KQAPRAWYQRFASFLSTIGFVNSKTDHSLFIYTHGDDTSYILLYVDDIILTTSSHSLRDTIIAALQSEFSMTDLGPLNYF
LGVSATRHSGGLFLHQSKYAEDIISCAKMVNCKSALTPVDTKSKLSATSGEKFDDPTLYRSLGGALQYLIFTRPDISYAV
QQICLYMHDPxTSHFADLKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGDYPDTRRSTSGYCVYLGDNLISWSAKRQ
TTLSRSSLEAEYRGVANVVTESCxLxNLLLKLHCPISKATVVYCDNISAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQ
VHVLHVPTRYQYADIFTKGLPKPLFDDFRSSLSIHPPPTSTEGVY
>Copia-42_GM#LTR/Copia 118-4455 via tfasty with Copia-100_GM, 84.3% SW:4741, 2 stopcodons. [Glycine max]
MSERDTHIPAIDSFLYLHPSENPAVSLVSPVLDSTNYHSWSRSMMTALSAKNKLEFVDGGAAEPLKIDRTYGAWKRSNNM
VVSWIVHYVSMTIRQSILWMDKAEEIWKDLKSRYAQSDLLRISDLQQEASSIRQGNLSATEYFTKLRIIWDELENFRLDP
TCTCSSRCTCIALKTVAQRKREHRAIQFLRGLNEQFGNVRSHVLLMDPFPEISRIFSYVAQQERQLGNSLINVNSIEMKP
ILVNAAKLVCNYCGRTGHTKSVCYKKHGMPSGSNERNKMNSFINNKICTYCGKTCHTVEVCYKKHGFPPSFKFSNSRSSA
NSSVTGDEAITNDQTQQIEPKEIRFSPEQYKALLALIQQPSEGNSDSMSSSSKQIASCSVDTTPIHGKHPFFVNNTCTHC
TWVLDSGAIDHVSTSLSSFKSYTKLNPPILVKLPNGHHVSATHSGDICISDSIVLFSVLYVPAFSFNLISISKLVSTNHC
KLIFSSDSCLMQDALTQAKIGIVEMRNGLYYLTPTRPATCSIETEIVHPNCTIISIDLWHSSLGHLSFERLQKMQGTYPF
LKFNKDLVCNTCHYAKHKRLPFLNSSTYASCSFEVLHIDIWGPCAKTSMLGHRYFLTVVDDHTRFTWTFFMHIKAEARKH
IQDFIILVHNQFDSKVKVIRTDNGVEFLMNDFYSSKGIVHQTICVETPEQNGIVERKHQHLLNVTRALLFQADLPHSFWL
FALTHATHLINCIPTPFLKDASPYEILFGKPCDISNLKVFGCLYYISTLSANRKKLDPKGHPCLVLGFQPNTKGFLVYNL
HTNDLTTSRNVVFYENHFPLHHTTQEIETQPIPPIVSPTPFQSEQYSFDTPAFNPSNTSMPSEPVLRRSTRDRKTPTFLT
DYHTFLNSTNTFNPISASVMHPGKSSVTHPLDSVLSYSRLSPSHKHFALSISTIVEPKTYTEASQHDCWFKAMKAELEAL
QSNNTWTLTELPHNKKAIGCRWVYKVKYHADGSIERYKARLVAKGYTQMEGLDFLDTFSPVVKLTTVRLVLALAAINGWH
LRQLDVNNVFLHGELNEEVYMQLPPGMVVPHSNQVCRLNRSLYGLKQASRQWFHRLSTLLLNNGFTQASSDHSLFFSFNN
ESFTAILVYVDDIVLTGNDIKRINQITSLLDAVFKIKDLGNLKFFLGIEVARSPQGIHLCQRKYTLDILSDSGMLACRPA
ATPMDCTTHLQSQGDPLLVTTASSYRRLIGRLIYLTNTRPDISYVVQQLSxFMNVPTIDHQKAASRVLRYLKGSPGHGLF
YPTSGSIHIQAFSDSDWAGCRDTRCSITGYSIFLGNSLISWKSKKQSTVSRSSSEAEYRALVATTCEIQWLTYLLLEFHI
SFNQPANLFCDNNxAIQIASNQVFHERTKHIELDCHIVRKKCLSGLLKLLPVHSSMQLADAFTKALRPASFKFMISKLGM
MIIYSQ
>Copia-45_ZM#LTR/Copia 2980-7303 via tfasty with Copia-60_SB, 1 frameshift. This is the product of the inner Copia element of Copia-45_ZM, which is inserted in a Copia-60_SB-like copia in the opposite orientation. The product of SZ-6 is very similar with lots of errors. [Zea mays]
MAEQTLDATANLGAIQQLMVPSYATVSVQSHVPTKLEMKASNYSRWASFFKSMCGKFLLRHHIDGSAPPRPQDPIWDQAD
CCVRSWIFGSVDDSILSLAVDGDNQTARNLWVAIEGLFRANKAPRAILHLHDFHSMTQGDSSIDEYAEIMKRKAADLRDV
GHPVEDSQLVLNLLRGVNPRFSNTADDIANSTVLPDFASALDLLKLKELRLANEVKTAAATALLAATSSCSGPGGCRSSA
GPQQTPAGGGGYGKGGGGYGGGSKKKKGGNYGKHAGASTHQWPQSGRQPSGPWFCFSPYGAPQGGPGGQGGWRAPGAGVL
GVAPQPQAHTAFAPLQMSSPTPNWDQSGLIAALHQLALQGQGSWVMDSGASSHMTSTDGILLSRLPPSYTSITVGNGHNL
PITCRGSSVLPTSSSTFTLRDVLVVPSLVRNLLLVRQFTRDNNCSIEFDALGFSVKDMASRRVMLRCDSDGDLYTIPAAT
HTSPYASIAITTSLWHSRLGHPSSTAINTLRNTSAISCNKVEPPLCHSCQLGKHVRLPFTPSQTRSSAPFDLIHCDVWTS
PVASISGYQYYLVLLDDYSHFCWTFPLIRKSEVASHITDFCALVQTQFGVTIKSFQADNGTEFANHTLTSLFSSRGILFR
FSCPYTSQQNGKAERILRTLNNISRTLLIHAHMPPPYWAEALVTATYLLNRRPCSSVNNAVPYTILYNKTPEYSHLRVFG
CLCYPNLSATTPHKLAPRSAACVFLGYPSSHKGYRCLNLTTRRVIISRHVVFDETSFPFSTTLLPVTDMDFLIAPNPAAA
VPVVAPSPRDVERPRPSPVVHEEDPAILLRGPVLQELASRTPPSSAAPPPPPTTLPDAPRERPRVYARRPRTTPALPEYV
AEPAIHVVDDPVSSSPAPPPPPPPLEPRRVTRTQSGAIQPVRYVGLSATATTPASPIPGNYRSGLADPNWRAAMAEEYQA
LLDNDTWRLVPRPPRANVVSGKWIFKHKYHSDGTLARHKARWVVRGFSQQHGIDYDETFSPVVKHPTIRTVLSIAASRSW
PIRQLDVKNAFLHGHLEETVYCQQPPGFVDPAAPDHVCLLQRSLYGLKQAPRAWYQRFATYIRQLGFTASSSDVSLFVYK
EGESLAYLLLYVDDIILTASSTDLLQRFITLLHSEFAMTDLGDLHHFLNISVTRSSDGIFLSQRQYAVELLQRAGMAECH
STSTPVDTHAKLSATEGAPVADPSIYRSIAGALQYITLTRPDLAYAVQQVCLFMHDPREPHLALLKRILRYLKGTLSSGL
HLGVGPVQSLTAYSDADWAGCPDSRRSTSGYCVYLGDNLISWSSKRQTTVSRSSAEAEYRAVAHAVAECCWLRQLLQDLQ
VSLASATVVFCDNVSAVYMAANPVHHRRTKHIEIDIHFVREKVALGQVRVLHVPSTHQFADIMTKGLPVQLFTEFRWSLR
P
>Copia-45_PIT#LTR/Copia 47-4999 via tfasty with Copia3_XT, 54.2% SW:1340, 6 frameshifts and 6 stopcodons. [Phytophthora infestans]
MSTKDKKEPREEKQLKHLPFDGNDFEVWLERITLKLERKELWRYCETEVLEPDESKESEKHARWKKETRRAKEILYDGMT
NQIMKTVKYEPTPFRVLERLKKRFVGKTYFKYAEEMTNLRRLRLDPKANMADHLGEVRRLMEHIAVLGKPLDDYEKPALL
IGSLPSEYDNVVETFLTSHTPQDINEPPNYEQLEHALEVAYDRRQGRKTESGKVDDEDKAYMSSGGRGRGRGRGRGRGRS
GPGGRGSPGRRGGFGGRGSGGRGGSAGRGRGRGGQGRGTQQQLLGSCYHCNEQGHQVRDCPYLGKRPPSERSGVKQPGKR
SKAGGGQQAKSGNAKSSSSQGNYFGEESDNAYVAGDCLQRRMENIAHKRWYLDSGCTNHITNQKSDFITLIPLSARVRVG
GENWLNVAGIGTVQKVLRASRGLCTLLLHDTRYVPELQCSLFSVRRQTRKTLPPNQRVRVHFDDDDCAIVKVQSASAAAR
IDETNLYHLELESPPDVVMVVSSTSEQSASLWHVRLGHPGRNVFNALFRHVDWPLANVDLRVDETFHCESCVKGKLTRKS
FHTVNIPDREWLVGEFVHIDVWGPYAIASYSGKRYFALFVDEASRFSTLFLLENRSEVYAKFELLYEYVKTQLKVRMKKL
RCDNARELTSLCRMCEKKQRMECSLTVKHTPEQNGIAERMNKGLxLNRMRCLLAHFQLPQDLWAEAAVTTAxYVNIVPNA
TKGMQVPFAVWHRETPAYSQLRTFGCAVLAYVDKVERKKMDPKARASIFVGYSREQRAGYKTNQAFYSHTAVFYESKPGR
VFTxQIHPESSTTEYLGVDDGVMENIPSILEAAHNDRLGGAEDEEHQHLGDVEPHCRDDHASRTDGHNAHVSDSRAGGAR
ADERSGGEVHDEMQRSIKRGRSCVDVPHNESRRKKQRTCKQMNQSASSTTVASGARDREHLQVDHLRGMSNEHGTMPTHR
SKKKMHSGRRKAPTVEVQHQEYVDEKSNTMLNDELPTREWAYTPTSRGMTTTDSEMSRSRENSSKEGVTTSKKRGLREFV
ALEGANTEVCPVTRSGRVSKPPSWISDYVYIAYSNTNPDDDAVCSGSVEWVKAREELQQAMAKEKALAWWQDYCCLAVRI
ITEPHTLDDALLSEYAVQWKDAADEEYRALMENCTWVLVPREKHMKVLKNRWLFRVKYTSEGDIERFKARLVVKGFMQIY
GIDYLEVYSPVVRLDTLRALLTLAAVWDYEAHQMDVTTAFLNGAIDVEVFMEQPTGYVAEGKEDWVCFLKKSLYGLKQAP
RVWFRLLRSYLEEQGFGLCExSHCVAVKVVDGWLVFITIYVDDLILFAPNLVMIQMLKDMLDARFKMKDLGELHYILGWE
IIRNRQDRTVFVSQRKYMLTVLERFQMSECNGCKTPSTADLKLSKTMCPTDTDENDLMKTKPYRAVIGSLMYLMLGTRPD
LAYLVRECSQFLDNPGLMHWRAAKSGLRYLKETIDWGLRLGWYxVGKxKTDNHLDAYADADFANRVDDCKSVAGYITKFC
GSTISWVSQTEKTVALHTTEAEYMALSLLVQEVVHLRQMLKELKVQQRNPSQIYVDNESAKKLAKNPQFHSRSKHIDVRH
HFVRERIELKQIDVERVASTDKIADAFTKPLTRPSVREAQSSDGIDDTQRI
>Copia-46_ZM#LTR/Copia 34-4272  [Zea mays]
MASSNSSSNPLLGVQVTEKLTRQNHGMWSAQVLAILRGARLERYVNGKAVAPSEEIDEKQSDGKIAKVSNPAYDEWFATD
QQVLGFLLTSLSRDILAQVAIARTAAEAWKIITDMFASHTRARATNVRLALATTKKDNMTVAQYYGKMKGLADEMAAAGR
PLDDEELVMYICNGLDLEYNPLVSALVTRLEPVTPSELYSQLLSFETRLELQLGIGSSSSANSAGRGGGRGGSQQMRGPN
RGRGGRQNSGRSSGGRGRGQQQPLRQNQQRRSFPTGPTATHDNNGRPICQVCFKTGHTAIDCWHRFDENYVPEERHVAAA
MSPYSMDQNWYMDSGATDNITSDLEKLAVRDKYHGSDQIHTASGAGMEIKHIGHSLVHTPTRNLHLNNILHVPKATKNLV
SVHRLTKDNSAFLEFHPDYFLIKDQATKNTILKGPCRKGLYPLPLPAIKQAFGVVKPSFERWHSRLGHASAPIVSKVIST
NNLPCLDESNKESVCDACQKAKSHQLPYPKSHSVSSKPLELVFSDVWGPPPNSVGKNKYYVSFIDDYSKYVWIYLIKHKS
EVFQKFNEFQNLVERLFNQKIIAIQTDWGGEYQKLHSFFERVGISHLVSCPHAHQQNGAAERKHRHIIEVGLALLAHASI
PLKYWEDAFVAATYLINRTPSRVINYDTPLERLFQQKPDYSSLRVFGCACWPHLRPYNTHKFQFRSKQCVFLGYSPSHKG
FKCLDPSTGRVYISRDVAFDENVFPFSQLHPNAGARLRQEISLLPSDLQPIPSDQGGELMGDHRFDSNNLCDEVCAETAS
PARVSALPSSIADQPNQATSPTELGQQTESHAPDSYDPIGADSTEDLPPPAPGSPMAEGAASQIVQPTAPEDSRPRTRLQ
AGIRKPKVYTDGTIRYGCFTSSGEPHNINEALEDKNWKDAMDLEYSALMKNKTWHLVPPKKGTNIIDCKWVYKIKRKADG
SLDRYKARLVAKGFKQRYGIDYEDTFSPVIKAATIRVILSVAVSRGWSLRQLDVQNAFLHGLLEEEVYMKQPPGYEDKSL
PSYVCRLDKALYGLKQAPRAWYSRLSMKLQDLGFKSSKADTSLFFYNKGNISMYVLVYVDDIIVASSTPSATSALLSDLN
KEFALKDLGDLHYFLGIEVNKVSDGLILTQEKYASDVLKRIGMSDCKPVATPMSTSEKLSVHEGDLLGPNDATQYRSMVG
ALQYLTLTRPDISFAVNKVCQFLHAPTTVHWAAVKRILRYLKHTTRLGLKIGKTTSLLVSGFSDADWAGSLDDRRSTGGF
AIFLGSNLVSWKARKQATVSRSSTEAEYKALANATAEIMWIQILLLEIGIQAPRKAKLWCDNIGAKYLSANPVFHARTKH
IEVDYHFVRERVARQLLEIEHVSTRDQVADGFTKPLAARQLELFKGNLNLEKI
>Copia-48_PIT#LTR/Copia 40-4773 59.0% sim to Copia-29_PIT, SW:1538, [Phytophthora infestans]
MSTTNNNKKGGSDDKKKAHPPFDGQDFEVWLERMTLKLQRKGLWSYCEKEPTEPSFTDDEAKGEETDDHAKYMKESRRAK
EILYDGMTDKIMKTVKYEATPYKVMEHLKKRYIGKTYFKYAAEMTKLRKLQLDAKGNMSDHLGEIRRLMDRIGLLGKPLD
DYEKPALLIGSLPSDYDNVVETFLASHVPTDPNEPPNYEQLEHALEAAYDRRQDRKVAADNIDEENALFADGGRGRGRGA
GRGRGAERGRGRGRGRFSGRGRGRGEGCGRGRGEGYGRGRGAGGRGSYGQGGGPECFHCKEKGHRVYGCPHLGKRPPNET
KSNAPSSKRSNTSRKGTYNESDDEAYVILHVMNLKRPIADLAHDRWYLDSGATSHMTNQLTDFVDFTPFSARVRVGGNHS
LSVEGIGTVVKLLSTSSGKQRLTLRGVRYVPELQCSLYSVRRQVNKDVPITERVKVHFDEPEGADVMLQDGNTVAHVDET
NLYRLDLESPSNVAMVALPKKTDEVRLWHTRLGHPGRSVFNALFRHDAWPLSNVDLRTPEHFECETCVKGKITRKSFKSI
AVQHREWLVGEMTHLDVWGPYAEPSYGGKKYFAVIVDDASRFATVVLLERRSDIYDEFDAYYERVKTQLHVRMKSLRSDN
AKEFDKLQQNCARYGLECTTSIKHTPEQNGVAERMIRTLTERMRCLLSHFNLPQPMWAEAVMTAAYCLNIMPNSVRGMEI
PYTVWYRETPSYSKLRPFGCAALTYIDKVERRKLDAKAREAIFVGYSREKRGYRFLDSKTRKAFYSHTAVFYEEKPGRVI
AGTADSVTHAASTGEYFGLNDSTVRDLEPILDEMHEEDEAKKRCENKRRDGEATDEKTEKSQTGGAELCDENKSDVALSS
RKRGRIHEMMTDKPQKRVRFHRSKRCPAPAAALVERGPEGQEEDATAKVPKSHVDDDVERIAAHTQQSSLEQEPLEDGES
KSYPVTRSGRVSKPPRWLSDSVHLAYKESTNADDTRGLTVATGIEWKKARAQMQLEIAKERAMDVWQDFVCLTASAMFEP
TSYKEAMQSDEAKQWKDAMDAEYEALLKNGTWKLVRRTKDMKVLNNRWVFRVKYHANGDIDRFKARLVIKGFMQIYGIDF
FEVYSPVVRLETLRILLTLASIWDYEVDQMDVTTAFLNGGIDVTVYMEQPEGYEVKGKEDFVCVLLKSLYGLKQAPRVWF
RLLKDFLESEGYTLMQCEACVAVKAVDGWLVFISIYVDDLILFAPTKAMMNVMKQMLFRRFVMKDLGPIHYILGWEITRN
RQERTMFINQKKYAEKVLQRFDMAKCNGCRVPSDVSLKLSKSMCPTTNDERELMKTKPYRAVIGSLMYLMLGTRPDFAFM
VRECSQFLENPGILHWRAAKRGLRYLKETAEWGLCLGGVQERQKLTHHLQAFADADFANRVDDRKSVAGYLTQFCGSTIS
WCSQTERTVALHTTEAEYMALSLLVQEVVHLRQMLRELKVKQVKPSDVFVDNESAKKLAKNPEFHSRTKHIDVRHHFVRE
RIELKQIDVKRVPGVENVADAFTKPLPRANLEQHRSAMGLISKETFESTGGRHSDDNQ
>Copia-47_VV#LTR/Copia 1435-5580 via tfasty with Copia-89_VV, 88.2% SW:5004, 1 stopcodon. [Vitis vinifera]
MMYIYSCMYDAYVTNCELYYYESTSSISANVNNIPVLNGTNFKKWKEHVIIVLGCMDLDFALRDDRPSDLTSASTAEQRS
TMEKWERSNHMSLMIMKHSIPEAIRGAIPEETQAKAFLDQIANRFAANEKVETSTILSKLVSMRYKGKENIREYIMEMSN
LVTRLKALKLELSEDILMHLVLISLPTQFNPFKISYNTQKEKWTLNELIAQCVQEEERLKQEKIESAHLASTSQGFGTNK
KRKKDNKGKQTAVSGTSKQKEQKKQDKEITCFFCKKAGHMKKTCTKYAAWREKKGTLLNFVCSEINLAVVPTDTWWIDTG
ATTHISVTMQGCLRSRMPTDGERYIYVGNGNKVAVKAIGLFRLQLDSGCTLDLEETFVVPSFRRNLIYVSCLDKFGYCCS
FGNGMVSLYLNSNIIGTGSLTDKLYKLNIKATNGNETLHSSNYGIKRKLMNENSSMLWHKRLGHISNQRIQRLVSDGILD
PLDFSDFQVCIECIKGKQTYMKKKNANRCSDVLELIHTDICGPFPTPSWNGQQYFITFIDDYSRYDYLYLIHEKSQSLDV
FKNFKAEVENQLSKKIKAVRSDRGGEYYGRYDGSEEQRLGSFAKYLMECGIVPxYTMPRTPSQNGVAERRNRTLKDMVRN
MISHSTLPESLWGEAIKIEVYILNRVPSKAVAKTPYELWTSKKPSIRHLHVRGCPVEARPYKPNEKKLDSRTVSCYFVGY
SERSRGFKFYDPSTRSFFETGNAKFIEDVELSGREPLRKVVFEEEFVNIPIITTGHGHIMFNDTIQNVQSITGIQDTPEI
PPAQVMEPIQVHQEVTQQPQVQVPLRRSTRERRSTISDDYVVYLQEHEFDMGLEDDPISVSQVKQSSNSEKWIEAMKDEI
KSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHY
DLELHQMDVKTAFLNGNIDEIIYMVQPENFESKDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYL
KFSGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGM
SNCAPEDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVM
RYLQRTKDYMLTYRRSSHLEIVGYSDSNFAGCLDSRRSTSGYIFMLAGGAVSWKSVKKTLVASSTMETEFIACYEASNHG
IWLWNFVTQLRIVDGIEKPLRINCDNKAAELYSKNNRSSSKSKHIDIKFLVVKERVQSLQVSIEHISTNSMIVDPLTKGL
PPKVYHEHVTHMGVVHIDDVSE
>Copia-44_VV#LTR/Copia 21-3959 via tfasty with Copia-58_Mad, 83.5% SW:4083, 2 frameshifts and 1 stopcodon. [Vitis vinifera]
MEGETIKIMNQDLVRLNRFDGSNFTRWQDKVRFLLTTLKIFYILDPTLAPLLEPKENDTPQVVAAARKKRKEDELICKGH
ILNALSDRLYDLYTNTNSVREIWEALENKYKAEEEDTKKFLISQYIDFKFFDEKPLLPQIHELQVIVNKLKVLKIELPEA
FQVGAIVAKLPSSWKGYRKRILHKSEDYSLEEIQKHLRIEEESRSRDKNGGRANGGTNKANAVSKANHPRGKNNNKRNSG
NYMSPKKNQEQFKGKKGPCFVCGKPGHYARECRYRKDLKGAVVNAIDEEIIATLSDVCVVQGKVQGWWYDTYATVHVTYD
KSLFKTFEDAKGDQEVQMGNEGRSKVLDKGIVEVVFTSGKEVTLINVLYVPDMNKKLVSEDLLGKPGIKAVFESDKLILS
KSGNFVGKGYSYDGMIKLCTNDNIIKMASTSAYMCDSNSLFLWHNRLAHVGLSTIKRIVKCGLIACDTKKFEKCEICVKS
KMIKKPFHSVERSSNLLDLIHSDICELNGMLTRGGNRYFLTFIDDCSRFTYVFLLKNKSETFNAFKVYKAEVENQLGKNI
KVLRSDRGGEYFSSEFNSFCEEYGIIHECTAAPYTPQHNGIAERKNRTFLKMVNAMLLHAKLNFNLWGEALLTACHILNR
IPRKKNEISPYELWKERKPNIGYFKVWGCLAYCKKTDPNKTKLGPRAIKCAFVGYASNSKAYRLLDLESNVIIESREVEF
FENLLSDSNSQVPTSVGESLEETPSKVVEQPIVPRKSQRARKEKVLGSDEIDSQRISFYLVEGNREDIIRKIPIVLQIEE
DPKTYKEAMASRDVAFWKEAINDEMDSIMSNxTWELVNLPPRSKPIGCKWVFRRKYHTDGMIQTFKARLVVKGFKQREGI
DYFDTYAPVARTTSIRILFALASIHNLFVHQMDVKTTFLNGDLNEEVYMEQPEGFVLLGNENKVCKLVKSLYGLKQAPKQ
WHEKFDHAILSDGFRHNNVDKCLYSKTCDDYMVIVCLYVDDMLILSDDMKGIIETKRFLSSTFKMKDLGEVDTILGIKMK
RNSEGYALNQTHYIDKVVSKFSHLKIKDANTPFDSSIKLEKNDGRSVTQLEYASAIGSLMYDAQCTRADISFAVSKLSRF
TSNPKVEHWKAIGRVLGYLKNTKELSLQYSKFPAILEGYSDASWISSVGDNLSTTGWVFTLGGGAVSWGSKKQTCISHST
MEAEFIALAAIGKETEWLRDLMMDIPLYCNNVSTVSIHCDSQATLARAYSGVYNGKSRHISIRHEYVRQLIQYGIISISF
VRSSGNLTDPFTKPLTRDLVRITSRGMGLKLLK
>Copia-42_ST#LTR/Copia 89-4713 via tfasty with Copia-74_ST, 72.2% SW:3440, 1 frameshift. [Solanum tuberosum]
MDEETEISSKKTSEQIDVSHPYFLSPSDSPGMNLINTSFDGTSFGSWKRGVLISLSAKNKLGFINGSCKIPDTESTLLVY
WQRCNDMVLSWLLNALSKEIAESVLYSQTAAELWGELEERYGQADGTKLFQLQRELINMTQGSHNIAGYFTKLKKAWDQM
KELNTFMICTCDCKCGAKEHNQKMNEDQKLLQFLMGLNEGYSAARGNILMMKPLPTASQAYSIMLHEESQKQVHNNNYMS
TDASAFFVNQRGAQRWTPPKKQFDSKAGQHEGTHEGKQMDLFCRYCKKTNHIKANCCKLIGYTPHFKLNGQKQKQEGNSD
SYANAVQTGGVHSSTNPGDNLLNFITSQPFSKAQCERLAKAFQAMQCDDPNAGNSEASASANLAGTATVCNIFFSLFSQY
QTRDDGNIFGSFFSPSSSKFWIIDTGASQHMTFDRTLLHNLKYLDSPISVTFPNSYKLKVHVVGSVHLASDLELHNVLFI
PSFKQNLLSVHRLCEQFDCDLIFSKFGCTMQVPSMKKEPLFGKANTGLYVLRSNTSLQHSTSTSITPSLRQSSLLSQVQS
TMPSSLSQESVSSRLSSHSVLSPVCNTSSAINRDVSVSNVFSSSKLWHYRLGHLPYAAMKHIHTVSFTEKDNFPCDICPM
ARQTKPPFPLSSISSTRCFQLLHIDTWGPFNTPTYRGEKYFLTIVDDFSRCTWTFLLSTKSDSFSSFKSFLSFIDRQFSV
KVQIIRSDNAFELGSSFEHKAFLQSQGILHQTTCVDTPQQNGVVERKHRHLLETCRALLFQSHAPKKYWGDCLLTATHLL
NRFPSKVLHNKSPYQILFGKVPDYNYLRPFGCLCFTSTLPRHRDKLSPRAVPCVFFGYPFGKKGYKTLNLQTNQIIISRN
VKFFEHIFPFAYSTPLQKLFPASSFPSTDYSPPPTSSPVTSFSDSIAPPPSPTSFIPPSPVYDISPSQSPTSTDATVQVP
TPVLTSPQGQVLRKSQRVHSAPKFLSDYICNSASSLISPDPPFLPLHSFAFAALSPHNQSIITSICQIQEPHSYQQAVLH
PGWKAAMTQEFAALESNHTWEAVQLPPGKVALPCKWVYKVKLKSDGTLERLKARLVIRGDTQREGLDYFETFSPVVKMTT
IRCLLSIAVKRKWDLFQLDVNNAFLHGDLDEEVYMRFPPGLPAPSPSTVCRLRKSLYGLKQASRQWYAKLSSALKTRGFT
ASLNDYSLFFKVSGPLITIIAVYVDDILLTGNHSSEISAIKTFLDSEFQIKDLGLAHYFLGLELVREGGGLVVTQRKFTL
ELLKEFDCLDSRSVSTPLDPTLKLTSECGKPLPNPIIYRRLIGKLNFLTNTRPDLSYTVQTLSQYMHYPCSGHYEAALHT
LRYLCNDPGLGLHLTSEPTFQLLAYCDSDWASCSDTRRSVSGFFLSLGGCPISWKSKKQPVVALSSAEAEYRSMRRIVAE
ITWIVRLLNDLSAEPSLPVPLRCDSQAAIHIAKNPVFHERTKHIELDCHFVREKLLDGLISLSFVPSSSQLADLFTKSLA
GPLHRALLSKLGLRTSGSNLRR
>Copia-42_SB_env#LTR/Copia 6821-8554 via tfasty with Copia-10_SB_env, 2 stopcodons. [Sorghum bicolor]
MTRGSPSRHVEKRSKTNQDRSAAPRTKAVLPRAGPGGSRRAAARASGQGPSAPVAAPPPSSHRAPDPTGRDTEVDPAEEE
LxRAGRTISAQVRSPYDGPECPISALVPFDSPAPIVRCPEIAPNMGGWAPPHPIDFRHNVRDIRSFRSRNLYAEDEKDLH
LEYCFWHYFHFYYYDSILYRKSLKKGKPPVIQMKYIIEYSLTSTFKDQEIRQMVEDLRNMGISGLMELHRHWNNEVIMQF
YASYFHETDNESDTDVIHWTTKGRHYKVDFVTFARLLGFNGHDRRAAEITDYEDVAMSEYQFMYLEGFPANGxTVYLKPY
YYVLNNILRQVLYPKEGDSTFLRDDSQKVLARFGDDFHKFSVSRYIWNRIHDASEDPVKNLPYAPYVMHVIQQVSRIRFP
TDGSNHKVLRLANRVSVQAARALKARGADPPPRRGGPSSARSRRAAPSPPAVSRSTSSQPLTSSGKGKKPSKFKFLMTYM
FGQCCASAQREHDIQERLYRLEQQAGVVSSPPPPFVPPRDPLVLYDEACQAYQDEATSRPHGKGVAAPEDEEYHEDEQDD
DDDDADDDGGDDEDFDFE
>Copia-42_VV#LTR/Copia 44-4531 via tfasty with Copia17-PTR, 83.4% SW:4916, 2 stopcodons. [Vitis vinifera]
MTKYDKHNSTATVSQITSNQEAMASSNSSADSNLMPITGHKLNGNNYLQWSHSVMMFICGKGKDDYLNGVAAKPNKTDEK
FKVWNAENNMVMSWLINSMTNDIGENFLLYGTAKEIWDAAKETYSNNENTLELFEVESVLHNFRQGELTVTQYFNTLNRY
WQQLDLFEEHNWSCPGDGIRYKQIIERKRIYKFLIGLNKNLDEVRGRILGSKPLLNIREAFSEVWREESRKKIMMGSQDS
VTNPESSALAVRGNPFNNNDHKPKKGRPWCDHCRRPGHTKDTCWKIHGKPADWKPSRFANDKEGRGNLVSMDEKPSPEPT
PFSKExIEVLQKLFSQSLPAAVPTVVGTGSLAQKGNFLSALNVKKEKLSPWIIDSGAFDHMTGDEKLFYTYNPCYKNLTV
RIADGSLSKVAGTGSVRVSKNITLDSVLLVPKLNCNLLSISKLTWDLNCVTKFGSNLCEFQVLDSGKTIGSAKMCSGLYL
LEVNDPPQGSTHHSDCSVSSSPISLSVSQSNNDSAVMLWHYRLGHPNFLYLEKLFPSLFYNKNPNEFQCEICQFSKHIRN
SYPNRSYKASQPFSMIHSDVWGPSRIKNVTGSRWFISFIDDHTRLTWVFLMKEKSEANQIFKTFNTMIQTQFQAKIQILK
TDNAKEYFNSILNDYLLSHGIVHQSSCVNTPQQNGIAERKNxHLLDVARSLMFSTHVPKFFWGEAILTAAYLINRMPSRI
LDFQTPCQILFQSFPNTRLISTIPFKVFGCSAFVHVHQQHRDKLDPRALKCIFLGYSPTQKGYKCYSPVTKQFYHSMDVT
FFEQQSYFSKSDIQGETNFIQEYQLWDIEESSHFFPNSDQPYPSLNHESIPPQNLFLESPYFLESPSQDQTNNSPTNPPP
QNLDTIQSTKNDELITYSRRRQNQKEMEQQASLEPTQESDPSSRSSEDPLGNYNPETNDGSDFPIAVRKGVRSCTKHPIY
TFVSYEGLSPKFKTFVANLDNIQVPNNIQEALGSPEWKSAVYEEIHALEKNGTWEISELPAGKRPVGCKWIFTVKYNEDG
SVNRFKARLVAKGFTQSYGIDYEETFAPVAKLNTVWVLLSLAANLDWPLHQLDVKNAFLNGDLAEEVYMEIPPGFETQTT
RNKVCKLRRSLYGLKQSPRAWFERFTKVVKKHGYSQYQTDHTLFVKHSPAGKLAVLIVYVDDIILTGDYEEEIRTIKSFL
AAEFEIKDLGNLKYFLGMEIARSRKGISVSQRKYVLDLLKETGMLGCKPADTPMDPTTKLGAKENCAPVDKGRYQRLVGK
LIYLSHTRPDIGFSVSMVSQFMNNPNEEHMEAVYRILRYLKLTPGKGLFFEKNQRRDIEVFSDADWAGSVQDRRSTSGYC
TYVWGNLVTWRSKKQSVVSRSSAEAEFRAMAHGICEGIWLRRVLQELKISDEEPMKMFCDNQSAISIAKNPVHHDRTKHV
EIDRHFIKEKIEEGIIKMLYVPTSLQTADILTKALPRKVFDDLSSKLGLINIYRPA
>Copia-44_ST#LTR/Copia 77-4606 via tfasty with Copia-74_ST, 68.2% SW:3164, 3 stopcodons. [Solanum tuberosum]
MDQEKDETQVLNTSTASKTTTIDINHSYHLHSSDSPGMNIISYTFDGKGFPGWRRAVLIALSAKKKLGFINGGCKAPGLD
TAEYEQWSCCNDMVISWLLNSLSREIGDSVIYSKTAKEIWDSLENRFGRCNGAKMYHLQKEVSSLVQGTSDIANYFTKLK
RLWDELDSLNVIISCTCVCVCEGKGKLVKSLQDQKLMQFLMGLNDVYAHARGNILMMSPLPSIDVAYSLLLQDENQREVY
VNANPLTNSAAFMATTQSKWNHRNGNQMMRGNTQSQKYDNGEQRNAKSVQRFRSRKTKYNPNVTCTYCGKTGHVHDNCYR
LIGYPDDFEFTKTRETQGTMKANAVTTEEKSEAFQNTQEDTAYNNYNQYMSKEQYTNLVQQVTKDVLKESRTTPTTGFNG
NVIAGTILRNSSSCLSLINSCTWIINSGASEHMCFDPNSFLSLTPLPVPLTLTLPNSFRIIVTHTGSVSVLPNLTLKNVL
YVPVFKHNLISVHRLSSQIKYDVLFTLSGCVLHDPLMKNIQVFGDVNEGLYLLKSSSIRSQFVSNANVVSIPQGNSSIPS
SGSVPFSFSANVVPSVDLWHVRLGHLPFSAMRKYSFIHFPSKFEHVCDICPKARQTRLTFPLSAIHSTKLFELIHIDTWG
PYKSPTYNGFRYFLTIVDDYSRGTWTFLLSSKSNAFPTLKEFLAMIERQFHAQVKCIRSDNALELGTGIQKASFLKFQGI
LHQTSCVGTPQQNGVVERKHRHLLELGRGLMFQSHLPIDYWGDCILTTTYLINRLPSKVLHGRTPYEVFFGKQLNYEFLR
SFGCLCNASTHSQNREKFEPRATTCVFLGYPQGKKGYKLLELNTKKVFVSRDVHFHEQxFPFASNKSYHSLPPIFSYHNS
TLDTPESVSCPSPSPQALAPPDITSPDIATPSPISPSVSSPTSSSLSSSSSSPLITEGRTQRVRHKPSYLEDYYCNNIQL
TDVTTACFVHPSTPTAFSFTSLSLPNQHMFNSISDVVEPKSFAHASQHAGWKAAMDAELEALALNHTWDILQLPPRKKAL
PCKWVYKVKHRSDGSVERLKARLVVRGDVQQEGVDFSETFSPVVKMTTIRCLLTVAIKKAWQVHQLDVSNAFLHGDLQEE
VYMKCPAGLPSIKPNQVCLLRKSLYGLRxASRQWYSKLAGALGFKGYTSSMNDYSLFFKASGSLTSIIAVYVDDILITGD
DISEINHIMQFLHTEFRVKNLGDIHYFLGLEILREKxGFIINQRKFTLELLADFDCSGVVVSSPLDPYSKLHVDDSPPVT
NPTLYRHLVGKLNYLTHTRPDLSFAVLTLSQHMQHPSESHYLAALRVLRYLRNDPSQGILLSSDSTFTLLAFCDADWASC
RETRRSVSGYFITFGGAPISWKSKKQASISLSSAETKYRSMRRVTAEITWLVRVLADLSVPPVLPITVNSDSQAAISIAK
NPVFHERTKHVELDCHFVRQQFIAGLITLSFVPSKHQLADLFTKPLSGVPHRHLLNKLGVISSPSNLRGD
>Copia-43_BG#LTR/Copia 83-4731 via tfasty with Copia-69_Mad, 56.3% SW:703, 2 frameshifts and 1 stopcodon. [Blumeria graminis]
MSXXFLLKNAGGFEQWRRAVXERXAQLMTXDLIETEDDXAPDPCLQTERPRFLNDDATTQQIALWEARERQFILTHNRTQ
QLLEYMTQILEPTLYERVLSTNSTNKRTPTWLYRAVKRTLNPSSKSAEIELQTKLSRLEKSAKTTDIDVWLNSWIQIENI
AKSNKYTWACDIIDRFHAAIGRRSIFFATSFAAHIWMGSITLQQLAEQYRLCEAKLKRFXYVEAXDLXSVFQPPVSFAAV
SKEXSSRKSQQKERLEKRGGCPCGPINHPLEKCFLFNVDLRPKGWKDTRQPHVKKKLRNTLMDGAKKKNHRKQTWTxDTP
NLLENPANQSSSALTAEDDTDMHENYINEDYVNEASVIGENSLQSAYMLALASSQSSLPYKNWWVFDSGSGRHLCHDKNL
FHTFKTLKSKQIITTGAGNCEVKGVGSVVLKVTTPRGAGTLNVDGVLYVPEFMVNIISMDRIKDQMLIWDHSENWLTQWD
AMRTPEVKIWNQYNQNFIAKDACYPIQTSIVTDIPESISVDLVLQNSSFAAKTSSLKKISSADVVIWHRRFGHPGPNTVI
QLNNAVVGAKITGSYDGKCESCNLAKSRRIVSRIPTDRGKDFWTRMHVDLLVLSEGWNGDKYALHAYDAKGHGHLVETLS
HRDQQSLSRTIISMIRKLKKDGRNVQFLRTDNERGLGSNFRQLLQDEGIQLETSVTYTPEQNGFAESSGNRICTVARALR
IHSGLPEELWPELVHTAVYLLNRTPTKGLNWTTPFEQYNEYKPDVSNLKIVGCRAYVHIPKEKRMASAKLAERAWIGYLI
GFEARNIWRIWHPKSRQVVRVRDVVFREDCLYRDDISRDEVPIEIDQFSNMVGPSDDDLLQPHLNRWNISEDSPDNTKIV
SEVSKIMKSSVSDKQIETDPYRNEDSKFKIPGNFWDPEPQTIKFFKPPKEHEVSTDIDKNNIIHGKRTRRTNTSAAVHVE
PIDDFGVNLGEPFFSCLANAITEDRLKGKISRIYNSDGYSFQSNQNLTKSVDPSSWKQMIKHQDNTQFRIAAESEFQGLQ
DRKAWEVINITDVPEGSKIFPMRWVFVTKKDGDLIKHKARIVVRGDLDKTPYVRDEIYSHTLSLQNFRALMSFINYNDME
TLSFDAIQAFVNAKRDKPIYCYMPEGFRQRGKVLRVHQALYGHRQSPKDWFNCYTSALQSLGFKSANEERCFWLHDNGII
LFFYVDDSIMAFEKKFEKQALELQRSLCELFPIKKLGEATSFLGIKIIREREKRKMWLLQENYMDRIGKSFKLKPTGRVM
TPLAPDFDMSHNTGEKLSADVIQAYQRKVGSAIYASICTRPDIALAVSMCADHLVNPAMRHLHAITHILQYLINTSKYGI
RYNGAPSKSDEQTPDMLLMASDASFGDNEGRKSSQGFIAFLYGGPVVWHSNKQRSVTTSTTEAELVALSAAARELIALER
FVGYMDKRTNITSKLICDNQQTVKILTQKAPLLTTKLRHIDIHQHWLRQILQSSDKIEMDLCWTPTSQMPADGLTKRLHI
TKHQEFVHQIGLENISECDIQTFNSTPEG
>HERV1_gag#LTR/ERV1 870-2618  [Simiiformes]
MGGKASKPTPLECMLKNFKKGFDGDYGMKLTPQRLRTLXEIDWPSFNVGWXAEGTIDREIIGRVFRVVTGVGEQPGHPDQ
FPYIDSWLSVIQTHPKWLQACFEDYCKTLVARTKQGTIEKTHKAQXQEKEQQGKQEKPVLQAPPEELETPPPYVPIYPSL
ARLRQEATPAAASGGSDSEESTPQTSPRREEPGPLPDKSKEELQDEVGRLRSGRARAMQMPLRETRGQIYLDAQNEVQGG
ERLYVYQPFSTTDIFNWKQHTPSYTEKPQALIDLMQSIFLTHNPTWADCKQLLLSLFNTEERCRVIQAAHQWLESNAPVG
TGDVRXYAQQALPIETDPGWDPNQAQGLLNLLRYREALIQGIKAGGKKATNTGKVSEVHQKPDESPSEFYERLCEAYRLY
TPFDPEAAGNQCMVNAAFVSQAQNDIKRKLQKLEGFEGMNISQLIQVATKVFVNRDEEAKREAKRRVKEKAEFLAAALVE
REAGFARGHGRGHGCGHGRGQARPGQETRTGQEGQPRLERDQCARCKQRGHWKDECPEKEKDKGNNQGQNGWTGPPSAAG
QGIVGSDVDLIGLAGANDYLED
>Gypsy7-PTR#LTR/Gypsy 1526-5577 via tfasty with SZ-10, 4 frameshifts and 6 stopcodons. [Populus trichocarpa]
MTLMTFMIVSVPMITVKDQFILGTVNTTINQGHHDYDDPDERVMRHIKVEAPTFEGQLDPWIFDRWIHDMDQFFGWYNLF
ENRMVRFAKMKLSGTAQLYWKREESLIRRGQPPITDWVEMKTKLEEKYLPRSYRGNLLDQWNNLRQGGKSANEYVTQFDE
YRMRCAVREDEVMTLSRFxKGLNDDLRREVVLWGCFHPxxSLYPSIKLxLGHKKPVDKTSGHRNTPSRSQPGSNNSILGA
LPHKPNPLIFQIPREDKGKSIFHEAPKTSRIQCFKCQGFGHISSSFPNKALLIKGQEDMDEEDNYDDKIYEPNPDDFQDL
NDEDDESNLLGCVxVYITQIKTTRLGVVRCALTQPKGTEDWRRTAIFYTYIKCGDKGCKIIIDNDSCINAVSSGSVSRLG
LKSVPHPKPYNVSWVNDTSIAVKERCPFPIKIFYYNDEIWCDVIPMDVGHAILGRPWLYDLDVTIFGRSNSCSFTFQGKK
IQLIGLPPRSNDNSQKKSKVKDGGLNIISPREFDKEICEESVVFAVVAKEIVEDFLEEPPEEVIEVLREFLDVFPSELPN
VLPPMRDVQHAIDFFPGATLPNLPHYRMNPSEHAELQRQVCELLQNGFIRESLSPCAVHALLTPKKDGSWRMCVDSRAIN
RITIKYRFPIPRLDDMLDMMAGAQIFSKIDLKSGYHQIRIRPGDEWKTTFKTKDGLYEWLVMPFGLSNAPSTFMRVMTQV
LRPFMGKLLVIYFDDILIYSKTKEEHFDHLIQVCTILRKASLFVNVKKCSFFTDQVVFLGFIVSWKGVSADSQKVQAIVD
WPEPKTIHEVCSFHGLSTFYRRFIKGFSTIMSPITDCLKQGEFKWSKGANRAFEEVKKKMTEAPVMRLPDFTKVFEVECD
ASGVGTGGVLSQERHPVAYFSEKLNEAKQKYSTYDKEFYAVVQALRYWRHYLLPQEFVLYSDHEALCYLNSQKKLNHRHG
HWVEYLQAYSFVLKHKSGIENKAADALSRRVTLLSVMSVEVTGFERLKEEYESCSEFGEIYLTLKDENHRAINGYHLQDG
YLFRDNKLCIPKTSVRDFLIWEIHAGGLSGHFGRNKTIEEVERQFFWFSLKRDVAKLVGQCRTCQLAKHRKQNTGLYTPL
PVPTCPWQDVSMDFVFGLSRTAKKHDSIFVVVDRFFKMTHFIPCIKSTDASKVAKLYFDEIVKLYGLPQTIVSDRDVRFT
SYFWKTLCHMVGTKLKFSIAYHPQTDGQTEVVNRSLGNLLRCLVSDHNRNWDLILPTTHFAYNSSINRSIGMSPFEVVHG
YKPRKPLDLFPMSLHARVSESAESFARRIQDLHIEITKQIQASNAQYKLQADLHRxHNEFNVGDYVMIRI
>Gypsy7-NVi_gag#LTR/Gypsy 3857-4954 via tfasty with Gypsy11_AG_gag, 1 stopcodon. (fragment) [Nasonia vitripennis]
RSTRCEHAINEHHDKQLCTHELHKRHSSFDGKKNLRDYIQDLTNASELVNDPIKLQVLQHALHKITGSAKKSLNNKTIKS
VEDLIQHLKQRFGPGRNFSYYNNKIQNVRMREQNTVGDFYDVINVLLSSAKNALKEEKVEEFKNEMMAPLETLAVDIFIK
GLPANLAERVDYSKPNDLREAYEEAVRLEIRMEAKIIPDSRPYxDRGRYYNNQDNYNGFDHKTGRYYDAPPYPDRRNDTN
WRNNQPQHNDQTQRGNLNYQEARHDPSIASQNQGYPRQNQMHQMQSQGTNQVQNQQMPRNTDQQHYQQQLQAYNENKNAN
PTNPSNNQSKAPVMAILSRPEKYREYGSQTVKDLKMLIGRTTRPQQ
>Gypsy7_Dmoj_gag#LTR/Gypsy 587-1849 via tfasty with DM176_gag, 1 stopcodon. [Drosophila mojavensis]
MEGDATTPLSDTNMTQVINQLKNVEKFTGNKNALYTFINRIDYILALYTTNDARQRSILFGLVESCISSEVMLSLGMTNL
TTWTDLRKQLILNFKTQTKNHILLEEFRNTPFKGNVRAFLEEAEHRRQTLMSKLELENNQDEKILYDRLIKTSIDDLIQK
LPTNICIRIINCEIPDLRSLINILQETNLFDEPCQNLNQNKVKQDKNFKPTYPNPNIQKFPTFLQPNHPYVPYQPYFQQP
YLPPNHYSPRPMQPTPNPVRPFNPTLRPIFRQNQFDNNRFxQHTQTTPQQTPFNSFGVANQPTKRVRQAESEQSKMSIDE
ETRNQEEINYHDYMQKEYYNQLASYSQYYPQYYQEQSYPQTSDYTYTQPATTEQETEQPNEIEIEKAENFSAASLGNQQY
IIITYKGKNIKCLIDTGSTVN
>Gypsy9_AG_pol#LTR/Gypsy 2215-5742 [Anopheles genus]
FFRPTGVNSNPRSIYSLELNGVDYIKIRLSIANNETSILLVDTGASISLFKASKLKKNHGPIRSDSISLTGISNTPIYSK
GSTTCTIYFNNLELEHDFVLVPDEFNIGADGILGRDFYKLYRCSINYHLEMLTFTCQGEEIQHNIEEDDGKGFILPIRSE
VVRKVYLPNITEDTIVFAQEIQPGVFCGSTIISKDNQLIKFINTRQRNIYITNAEFKPITEPLANYEVKQVNNKVGEINN
DRLQKLLQKIKVDKIPTTEIYNLKKIVTEYNDIFCVEDDPITTNNFYPQKIELKDNIPTYIPNYKQIYSQADEIQNQVDK
MLKNDIIEHSVSPYNSPILLVPKKSTDDNKKWRLVVDFRQLNKKVIPDKFPLPRIDTILDQLGRAKYFSTLDLMSGFHQI
PLENDSRKFTAFSTGSGHYQFKRMPFGLNISPNSFQRMMAIAMAGLTPELAFVYIDDIIVTGCSARQHISNIVKVFDRLR
SYNLKLNPEKCSFFKTEVTYLGHKITDKGIYPDDSKFETIRNFPLPKNADEVRRFVAFCNYYRKFVQNFAKIAKPLNNLI
KKNVKFIWTDECQKAFNSLKESLLSPAVLKYPDFTKEFILTTDASDVACGAVISQITDGKDHPIAYASKSFTQGEKNKPI
IEKELTAIHWAINYFKPYLYGRKFTVKTDHRPLVYLFGMKNPTSKLTRMRLDLEEFDFKIEFLAGKTNVVADALSRIITD
SDELKASIPKNKSDISNPILMVNTRAMIKKNNVVENKENKKKKEDIIEEYNPTNMYETDRPSDTTKMLKMKSNINEKDEF
IELVIYNHNYYKALGKFKIPITSAKQSQTLEFVLHESCLIARKYHKNLAIASNDRLFEFYSMSTIKEIINKMITDVHIVV
FTPPRLVEDTEEQIKIMSNFHTTPSGGHIGQFKLYSKIKDKFKWKNMKADIIKYVKSCKACATNKILKHTKEKTVVTTTP
SKPFNIITIDTVGPLPKTANNNRYAVTIQCALSKYIVIIPIQNKEANTIAKALVENFILTFGNFLEMRSDQGLEYNNEIL
AQISKILEIKQTFAAAYHPQTIGSLERNHRSLNEYLRSYTNEHHDDWDQWTKFYEFVYNTSVHSTTNFTPFELIFGRQAN
LPQELYKTKVELLYNIEQYYNEMKFKLQKSHEIAKQKLIQAKLQRQAKLNENINK
>Gypsy8_DR_pol#LTR/Gypsy 1940-6655 [Danio rerio]
SHSAFKLKSVSIAGRMGTKRKQSPNNQQALNKHTDTRNSLKLPAGLVGMKCTARVKIEEKEVNCLLDTGSQVTTVPMSFY
NRYLSRHPMQPLNHLLEVEGANGQAVPYLGYVELTLKFPQEFLGSEAEVPTLALVVPDLTQTPQILIGTNTLDVLYAGHA
QTVKPRVMSRYQGYQAVIRVLEARLQQAGVNVLGQVKVKGDMPEVIAAGSTVVLNGCVKVIGPLSETCVTIEPSVSSSLP
GGLLVASSLHSLPAKRNVQIPIVLRNETQIDLTIPPKAVLAEVHAVQSVIEGRKPVNASVSKVTNPAQNRIIPDFGDSPL
SNDWKEKITDLVNSMQDVFALHDLDYGHTNKVKHHIHLSDSTPFKQRARPIHPQDVDAVRRHLKELLDANIIRESESSFA
SPIVVVRKKNNDVRLCIDFRKLNSQTVKDAYALPNLEEAFSVLSGSKWFSVLDLKSGFYQIEMEEADKSKTAFVCPLGFY
EFNRMPQGVTNAPSTFQRLMERCMGDLNRKDVLVFIDDLIVFSKTLEEHKAKLLQVLTRLKEYGLKLSPKKCKFFQTSVQ
YLGHIVSQNGVETDPTKIEALKTWPRPKNLKELKSFLGFAGYYRRFVQDFSKITRPLNDLTIGYPPLQKNQKRNPTKSTP
YLDPKEQFGERWNQDCQWAFNTIIEKLTSAPVLGYADPRLPYVLTTDASTVGLGAALYQEQEGRMRVIAFASRGLTKSEA
KYPAHKLEFLALKWAVTAKFSDYLYGGEFTVITDSNPLTYILTSAKLDATSYRWLSSLSTFNFKIQYRAGKRNLDADGLS
RRPHDEQIDDFASQKERERIKQFTLHHLAETEQQVILPDAVKALCERHQVYQSCGDSNLPYSQLTVVESLSQSVDAVPQE
FQQEAGGLPVLPQMSEEELKECQRTDPVLEKVIRHLDSGKKPHGKVEPAEVALWLREWDRFEFKNGILFRKRQDPRGVLY
QLALPKKLRGNVLKNLHNDMGHLGIERTLDLARARFYWPKMAITVEEKVKTCERCVKRKTPPERAAPLVNITTSRPLELV
CIDYLSLEPDRSNTKDILVITDHFTKYAVAVPTRNQKAETVAKCLWDNFFIHYGFPERILSDQGPDFESRIIKELCGIAG
IQKVRTTPYHPRGNPVERFNRTLLQMLGTLEDKQKTYWKDFVKPLVHAYNCTRNDTTGFSPYELMFGRQPRLPVDIAFGL
PATGSSPSHSIYVRNLKDRLEESYRIATENASKLARRNKKRFDERVVTSFLEVGDRVLVRNVKLRGKHKLADKWEKEIYV
VLKKAGDLPVYTVSPEGRDGPLRTLHRDLLLPCGFLQESMPEPVKPKPPRRPRTRANTSAREPDTMTESSDSEDDSMDHY
SRRHLPKVESRILFNPRHVKPSRDRPIAELSSKTRVVKSKINDCPAIEIPQENLPYLPEDENCPMSEPERENTPVMDSVR
PDMLRNVPVVNDQELLEQRDELEILSEIDDEADQRNIHSGQAVIDQVERNTLRRSQRHREPPQRLQYSQLGNPLSLVIQS
LLQGLSTAVTASLEESDCPREASLLMQKMFPSAAVTQPKRCRGTCIDSRRG
>Gypsy6_pol#LTR/Gypsy 2220-5318 (Gypsy1_pol 93% similar, Gypsy3_pol similarly close) [Drosophila fruit fly genus]
FFRGKSLLPVIRRRVAGKEMKFLIDTGASKNFIRPHKGLKGVRPVDSPFTIHSLHGVTTITKKCFVSLFDWKATFFILPD
LSSFDAIIGLDLLKQAGASLCLASGHLRWGNGEEKIEFHPCPDVNFTEVDCSDAPPLVRNAFLEMLKTRKKAFANPNEAL
PYNRSVVATIRTVSEEPIYAKLYPYPMGTADFVNKEIEDLLKNGIIQKSVSPYNNPIWVVYKKGTDDHGNRKMRLVIDFR
KLNERTVPDKYPMPNINMILSNLGNAKYFSTLDLKSGYHQIILAERDREKTSFSVNGGKYEFRRLPFGLKNAGSIFQRTI
DDILREQIGKFCYVYVDDVIIYSEDENSHIKHVDWVLKSLHDANMRVSAEKSSFFKKSVSFLGFIVTCNGATTDPEKVKA
IKEFPEPKSVFEVRSFLGLASYYRCFIKDFAAIARPISDILKGENGTVSRHRSRNIPVQFSETQQQAFQKLRNILASDDV
MLRYPDYKKAFDLTTDASAHGIGAVLSQEGRPITMISRTLKDREVNYATNERELLAIVWALAKLRHYLYAVKDINIFTDH
QPLTFAVSESNPNAKIKRWKARIDESGARIFYKPGKENLVADALSRQQINVMEEQEAQSCVATVHSELSLTHTIETTDKP
LNCFQNQITLEEARFPLKRSFVLFGNKRRHAINFPCKESLIDELADVIVPKGVNAIHCDLHTLALIQDELVRRFPATKFW
HCKNRVTDIFAVPERREILTVEHNRAHRSAQENVKQVLSEYYFPKMTKLATEIVANCKTCAKAKYDRHPKQHELGETPIP
SHVGELLHIDIFSTDKKYFLTCIDKFSKFAIVQHVHSRTIEDLKPAILQIMNFFPRARVVYCDNEPSLNSHTISTMLDNH
FGVSIANAPPLHSVSNGQVERFHSTLLELARCLKIDKGITDTVEIILLATAKYNESIHSVVDKRPVDIVQEHPDDPQTEV
RNRIIKAQNTLRTRENASRQHRVFEVGEKVLVKSNRRLGNKLTPLYEERAVEADLGTTVLIKGRVVHKDNLQ
>Gypsy5_AG#LTR/Gypsy 35-4444 [Anopheles genus]
MLTKEELLCALEVANIEVPPKATLPQLRMLYEQSVPKNKMEEQSTQNFIPQRVCADEDEVTNNGNHVAAAAILMKDKAAP
TSSTQGASFDATSHQLELMALRAKIMEMEQRQTFTDGRLVHPEELKHLIPEFSDGLGINKWINTIRYNSELYGWQDRTML
LYAGSRLTGAASEWYNGFRNTLKTFDEFADTIKKAFPDRCNEAVIHSQLASVYKKISESYTSYVYRVNALGMSGHVSEEA
IITYVIRGLSRDPLYDSLVTKDYRDIYDLIDNIKRYESHLLLRKNPERRSPSHINTISPRPIPPRQTTTEPLRCYNCSNH
GHHSSQCTQPRRAPGSCFRCGSTSHVIRNCPVPDRRQLTVAAVQGNDNETAHLDSGENGNFVQLEAYQEVSVAFKRNNVW
SPGLIITSLFDSGSSKSFINEAIVPVTKLSAPQPSGFRGIGNVNLQTLGTVQLKLSFRNQTFIHNFYILPKSYMSLSMIV
GRDLLSEFNITLAQFRKHYSKLMLMNLNKDKILNLKKPGFYHKLQTLGLLRSSIQAPLPEVCKDSKLSDPNISSKFISIS
DKSEHKQQYDTTFSEMCSINISDEASTINVGEHLSKEQGIALRSIVSNNYINFPDKHIIPSAHKMRISLTHDTPIFTKPR
RLSFDERNKVKVIVKDLLEKNIIRPSNSPYASALVLVRKKNGEIRKCVDYRPLNKVTIRDNYPLPLIETCLEHLGNKKFF
TLLDLKSGFHQVAMDEDSIKFTAFVTPDGQYEYTRMPFGLKNAPAEFQRFINTILRKFIENEKLVVYIDDILIASQDFKE
HLEIVSEVLHTLRNNGLELRLDKCKFAYDELDYLGYKANHSGICPSDNHVKIIKNYPVPQNTKQVQQCLGLFSFFRRFVP
HFSSIAKPLTNLLKNNVPFIFDDECKKAFETLRDKLIVAPVLAIYDPKRETELHCDASSIAFGSVLLQKQDDGRYHPISY
FSKTTSADEAKLHSYELETLAVIYALKRFHTYVHGIPIKIVTDCNSLVETLKNRNSSAKIARWSLFLENYNYIIQHRPGL
AMSHVDALSRLEHLAAFDDVDIDFQIRVAQARDPLIQTLKKELETTDVEGYQLQDGIVFKRSPSNRLKLYVPTEMVNNLI
RSIHEQIGHLGAEKCCNQIDQNYWFPNRKTRIINFINNCLKCIIHSAPSRVNNRNLHSIQKEPYPFDTLHIDHFGPLPTS
SLKKKYLLVVIDAFTKFVKLYPTTSTSTKEVCNALKQYFSYYSRPKRIISDRGTCFTSAAFSNFLSSRGISHVLNATGSP
QANGQVERVNRIIRPILSKLSNQTDHVDWVTHLLSTEYALNNTIHSSTRFSPSMLLFGVNQRGPSVDILTEYLEDKNKAF
SDLETIRAEASFNILKSQQNNEKQHAKHHRPAPVFNEGEFVVIKNVDNTPNSNKKLIARYKGPYVIHKRLPNDRYVIRDI
DGIQMTQIPYDGVLESDKLRRWIVPLGGA
>Gypsy4_VC_pol#LTR/Gypsy 1631-6031 via tfasty with Gypsy-1_CR_pol, 1 frameshift and 1 stopcodon. Removed pos 5084-5349, which seems to be an insert, before translation. Gypsy5_VC almost identical. [Volvox carteri]
DAGKRAGVSCKQAVSAVARVDEVSSAEPDLKIRDSVVPPVCDPLICDRMFLRDEFRRVENELGRQFTFDAACNDSGDNSL
CSRFASPSNSFFDTDVSGEFVWINPPYTHIKEWQQHYHRCKLKNPKTTSAVFAVPKWTQVECLMRSAGYQLLKTYAVGTQ
LFSQPVDVGTRSDLPGIPWPLQLWYDPPSKSVQLNSLDGNGRTMLFDARLCQTACKVLADSGANCGRVADGFISLEAVRR
MALSVRPCTISTVRVANGTHELINGSITAKLRIGSFHETVTLLVLKQGVPGVEIILADDWLERKKAKMCWESHTLTVRKA
TGDTVVLRPSFWSSADDDDHLDGIAIMNYVTATLYAASTVETMSAKAAARRIAKGARSYLMLVQSELISESSASAETLPP
DTDIIPEATLQGLLDEYKDVFEELKGLPPDREVGHTIPLVEGAVPPAKRSYRLTQLERQEVRKQVTELLSKGYIEPSTSP
YGAPVIFVEKANGQGLRMVLDYRALNKITIKRRYPMPNITDLFDQLQGAKIFSSLDLQQGYNQIRITPEDVAKTAFIAPG
MGQYQFKVLCFGLTNAPATFQAVMNRIFAEHIGKFVLVYLDDILVFSKTKAEHEQHLRVVLSLLRKHEFKAKMSKCQFNR
IELHFLGHVVSRDGLKVDERKVKVVKEWPVPTDASKLRAFLGLANYFRRFIQGYSSLVAPLTTLTSAKVPFHWTKECDTA
FQGVKDALTNAPVLKLPELDKPFVVWSDASLHGTGAVLLQDDRPVAYTSSKFSSAEYNYSTTDQECLGTVLEWRCYLEGA
SHVTLVTDHQPLVYLQEQKSADKLSRRQARWLERLSRFQFTWEYRPGRINVADPISRVHDTVLNVLTASLADSDLGHRIK
SGYDGDPNLAKSRVAKLQLKRRNGFWYRGNQIYVPHNAELRRAILTEYHDVPYAGHRGIDRTKQAIAQSYWWPGLDSDVK
EHVKSCPQCQRSKPTNAKPGGLLQPLPIPTEVWESVTMDLVTQLPTSRNGHDAIVVFVDRLSKMTHFAPTHTTATAEDVA
RLFVATVFRQHGLPKNIISDRDSRFTSNFWKETFRLLGTHLYMSTAFHPQTDGQTERMNRVLEETLRHYISPTQDDWDEH
LPLIEFAINNSKQKATGTTPFSLNGVRQPRVPVDLHLKTKVPAAQKQEAMLRERISKAKKCLLAAQQVQKDDADMHRRPV
RYEVGQKVLLSTKNITLKTPGTKKLMPKFIGPYTVVARVGEAAVKLDLPAASRLHPVFHVSLLKLYKEDVKRQPPAPLVI
EGEPYFMVEAIVDHRDVSVRGGRGKTRREYLIKWEGYDSSHNTYEPEESLRQSTPLAESIDEYERKLASKKHPQAPEKPK
GRKSSKKKxRSRDGSLQR
>Gypsy6_CB#LTR/Gypsy 22-4128  [Caenorhabditis briggsae]
MADLTQQIASLISVFGQLVPSQATTSTNGSQLVESISTRIPNFIYEPDEDLTFDSWYNRYGDVITKDGSTLTDEAKARLV
LSKLNTKEYSHFANRILPETPNSLKFEDLFPKLKETFKSTSSIFRKRQEFLRTEYDGSSIEEYTGLVLRRFTSSEFKTMT
DDQTCCMVWINGLRDNSYSDIRTKALQIMEAKPTCTLLELEKEIKRLLDVRADSKSVCSAAKQNEINAIHQKASSRDKSQ
KPPPSPCFKCGGKHWARDCQKQVKCTLCQKDGHIAKFCRTKKRDANVQKGNFSKVKSVIVGSATNSQRNRIYRVVTINGM
KIQMQLDTGADVTLIRTKDWNRLGRPSLLAPTIQVKSANHQPIAVKGSFQCQFNLNGTSATGIAHVAETGTLLGTDWISK
DKKLWNILNPSQISAVHSDAGSACNYLDITRNRLKAELNNEFSDVFKPELGRCTKTKASLLLKPDAKPVFRKARSVPFAA
LPTVSEELDRLQQAGVISPVDHSEWAAPIVLVKKKNGSLRMCADFSTGLNDAIQLHQHPLPTADDIFVTLNGGKYFSQID
LAEAYFQIELDEQAKKMLCINTHKGLFSYNRLAFGVKSAPGSFQQIMDSMITGLEGTAAYLDDIIISGSTIEEHNQRLMA
LMKRINDYGFRIRLEKCTFLMERITFLGFIIDKDGRRPDPEKIAAVQQMPPPTNDGQVRSFLGFIQFYGSFVKELFRLRP
PLDALTKKDAKFLWTSQCQNSFDRVKQILQSDLLLTHFDPKLPIIVAADASQYGIGAVISHRFPDGSEKAIYHISKALTA
PQRNYSQIEKEAFGLIKAVTKFHKFLYGRHFTLKTDHKPLLSIFGDKKGIPLYSANRLQRWAIILLNYDFTIEYVNTNHF
GQADALSRLISDQIQQKECEDRIVAQVESEVITNLVSACERLPVTANMIRAASKKDPLLNQVYKYVVSGLWPKIIDKSSQ
ISFFHHRRDQLSIVADCIMFNDRIVIPSTLKARVLKMIHRAHPGIVRMKQLARSLVYWPSIDKDIENMVRSCDQCAAVAK
NPIRNTLCSWPIPTAPWQRVHADYAGPLDGTYYLVVVDAFSKWPEVFPTTSITTTATINILRKVFSQFGDPQTLVTDNGT
QFTSSGFENFCKDRGITHSRSPPFHPQSNGQAERFVDTLKRSLGKLKGEENADTALYVFLQSYRSTPCTSSPNGSTPAEN
FIGRKIRTFLDQLRPKDQLPNSHDTEMEKQFNKQHGARSRSYQVGEKVYVKDYRNINTATWIPGTIQKRIGQTMYHVAVN
DTVWTRHTNQLRRRDAPIQFDVPLDTMDPIDVTPTATQLPSSSTHTTPSPVNTPAKPKTPPPKQYRKSTRIINQPPRLVM
KPNQKSYH
>Gypsy6_Dmoj_pol#LTR/Gypsy 3258-6956 via tfasty with OSVALDO_pol, 2 frameshifts and 2 stopcodons. [Drosophila mojavensis]
MLRARRRGKRNGAPPAGAGRRRLDSKNEVKNPLSVEEGRIVAAVVIGGRAMTATIDTGATRSCISEDCVRRQAIRGEIQE
MRSRTRLADGSTLEITKRISVEVSLAGKVAKMTLLVMPAMLDHLILGMDFLGAMDTTLCCGNAALTMRMKEEPNEETSLR
SGPHESKESDQSGGPQSLARSRIREKERKRGLEAPCWSPTQKGGAASTGGGLPIDGQGTSQGSGPPARPIKRWREIPKRE
PGRCPQLARAKDLEEGLEERPPEVRLVGLEAEDVDEIRSSQSPQRPIYQEEDEENTEPSPDDAGWPEDLEDELKEFLEAE
LALFEGLDGVSNIAEHSIRMRDDKPLKQRYYPKNPAMRKVIDEQVDELIRAGAIEPSRSPHSAPIVLVKKKTGDWRMCVD
YRQLNAHSIPDAYPVPRINHILERLRHARYISTLDLKSGYWQIPMAADSRECTAFTVPGRGLFQWRVMPFGLHSAGATFQ
RAxDTVIGPDMEPHAFAYLDDIVVIGATKAQHVENLREVFRRLRKANLRVNRKKCSFFRKRLVYLGHVISEEGIRTDPAK
VEAIRRFPTPSTLKELRQCLGMASWYRRFVPNFASMVEPMTRLLKKGHKWEWSDEQEESLKQLKESLTTAPVLACPDFSA
RFVLQTDASDYGLGAVLTQEVEGEERVIAYASRKMLKAELNYSATEKECLAIVWAIRKMRCYLEGYRFEVVTDHLALKWL
NSIESPTGRIARWALELQQYQFDIRYRRGKLNVVADALSRQPVESCQRMMETNPPCKWIARMRGRIKEDPEKFKDYVEEN
GQLYRNLGHRVDDEDYIPWKLCVPTHQRKRVLQECHDAPTAGHQGVRKTVMRLAQRYYWPGMFREATLYVKRCEECQKFK
SEQRKPAGQMLTRQVAEPMSILCADFVGPMPRSKRGNTMLLVFHDAFAKWVELVPLKRATAALLQAAFRERILARFGVPK
MFVCDNGAQFASKGFRSYMESLGVRLQFTAPYSPQENPTERTNRTVKTMIAQYIEGHQSSWDVLLPEISLAINSSGADST
GFTPAFLMMGREPRLPATLYDEVTPGSATREVDLETRKETMKEIFEVARNNLQKASKDQGRITICADENGDPRxGRWFCC
GSTSCPAQRRASRRNWRRKFEGPYRVVHFISPNVVRLARAGERRKRVANLSQLKPFYTEEEETGETMLREEAGEEGSGVF
QSPTSPHALQSDVGRRSLQRHGGGHRSRGRLLD
>Gypsy6_Dmoj_gag#LTR/Gypsy 1957-3327  [Drosophila mojavensis]
MEDAEYHNPGLSVGWIYQRCKEELITIAREFGLDTEGRVEDLRKRLSTFIQSNNYSAEAKARLAEIEKRFAKGSEFTLGG
NAPSMGSRAYQKSEPDLRKVQEQGPVQAESLRLRVPMANGAAVRRREERKEFGNTGEDEAVATIPKTGRQVPASTIPLER
SPPWGVAEQVRKWGMRYDGQTDPLGFVEIVEERAITYGIELDQMPRAMSEVFADKAAKWFLTSGLRDSSWADFMREFLDF
FLPPQYFERLEDQIRSRHQREGESFKDYLIELRLLMRQARYSAAQELYRAYENAAPDYRLYVRRHDFVTLTQLTQMAAEF
ENVQGQRREQGREAVADRTKTAWSKPAENRPNNPFRTQTPGSQVRGQAAGAAMAPTAVSQEAVHRMMVQEGESGTATRRT
CYRCGQVGHFARECQSGQAPSCQRCGKKGKSTRECCERDDAGNGMGRPPLERGGAA
>Gypsy9_DR_pol#LTR/Gypsy 1396-5956 via tfasty with Gypsy12_DR_pol, 3 frameshifts and 2 stopcodons [Danio rerio]
MSRGRGSAQGKPETDxTExAVGKLRWNSVKERPRVPISNRSDCFSFMSTDDFGLPVGLIGPSLDVPVQIEGIYARALLDS
GSQVTILYRSFYQTYLKHLPVQPVKDLEIWGLSLQKYPYDGYLPLRLEFTAAVAGVPQVVDTLALVCPDPQPAQKVALLV
GTNTVRQLFETCKAEAGDNFMSVLSVHPVVRDAYEKIQEVEIGEEICGPQGTIWFHQCRSVSLEPGETGQLEGRPTFPYD
LEDEHVLIDQPVDTMDLGALMVRPEVRPISMMRNHLVTVTVKNMSDHSINVTRGTPIAQVFPVDVVSPIIAEREVTDSNQ
ITMDSFNFGDSPLSLEARRELCEKLLERKDVFSTHEREVGCSCSTLHEIRLTDSTPFRERSRRLAPKDLEDVRKHLFELK
QCGIISESRSPYASPIVVVRKKSGSVRMCVDYRTLNRRTIPDQYTVPRIEDALHSLSGSQWFTVLDLRSGYYQIPMNPVD
KEKTAFICPLGFYEFDRMPQGICGAPATFQRLMERAVGDMNFLEVLVYLDDLIVFGRTIEEHHERLLKVLDRLREEGLKL
SVDKCQFCRTSVTYVGHVVSKDGISTDPSKVEAVVNWPRPQTLTQLRSFLGFCGYYRRFVRGYSSLCRPLNKLLGEEVSQ
EQEKKLSRSLAKEVFGARWDESCESAFQELKQRLTQAPVLAFADPQQSYVLHVDASLDGLGGVLYQPYPEGLRPVAFISR
SLSPAERNYPAHKLEFLALKWAVVDRLHEYLYGVTFEVRTNNPLTYLLTSAKLDAAGHRWLSALSTYSFSIKYRSGRKNV
DADSLSRRPYSSETEGGKWEEIPETGVRSLCQAVASGENSSVKECPFQSFSESGEIRAPVKNVFVSATQLKDSNEELWEA
QGQDPYLNIILSAIRKNQSHDNVKCELPEFACWRREWSNLAVSNGLLFRVTTSEGELNRQIVLPSALQSDTLASLHDSHG
HLGFDKTYALVKDRFYWPGMKDAVKQYCKSCERCLVRKTLPRKTASMQHMQSSGPMDLVCIDFLSIEPDRHNVGNVLVVT
YHFTRYAQAYPTRDQKALTVAKILCEKYFVHYGLPNRIHSDQGPDFESHLVKDVLGVLGVKKSRTTPYHPQGDPQPERFN
RTLLNMLGTLESTKKAQWSQYISQLVHAYNCSQNEATGYSPYFLMFGREPTLPVDVCYGTNEMGGSMSPSVYVQNLRKNL
RIAFELATEVAKKKNLSNKRRYDEKVQECVLNPGDRVLIRNLGLRGKHKLADRWSSVVYLVDKRLENLPVYQLTPENGVG
PSKVLHKDHILPVSSKVRFGEESKVVMVDDVPKKNRFPRRNLRTSHNIEVKEKGSFQVEGETDTDSESEYDCAPFRYLDF
SMFDGEEIGKDKGPEMNNDVGLLTDKCLVTPQLDQGDGNSVGNLEEEAVTSDPLDVDSNTDCQGQEKEVSESVDTLPEIS
LRRSERERKPPARFTYPNLGIPTEERMVTTKVCGVLLNHMQTPNQCHKHDLHHNWWCNSHALCQSCWVHISTLPCVVPRV
>Gypsy21-PTR_gag#LTR/Gypsy 2790-6143 via tfasty with Gypsy_MT_gag, 3 frameshifts and 3 stopcodons. [Populus trichocarpa]
MENEERAHLEAHYQRELKSMKSDITRLTSLLEQALVSKSGEDTSTQPAIATPSVSMPAAPFVFTSQNLGANPSSFEQRFT
THVPPTQVPVTVNLTTDDPYRMKFSKHVDYDKLTALEERLRAVEGADLYDPVHAAEMCLVPNVAVPKEFRVPEFIKYTGT
ECLVTHFKSYCNKMAEVVNDEKLLIHFFQDSLSGSALSWWYTRLDNTKIRKxKDLVKAFVEQYKFNMKVAPDRSSLLVME
KGNKETVREYALRWREKASHVQPSLLEKEMVTLFSNTFKSPYFEHLVGSSAQHFYELVNIAKRIEQAIRMGGMLEPTEKK
GFTGKKKDSEVNNLEGGIRVRKKNYHHYNFQIPTQQVASVNFTKYFPTNQQNQPNDQQSNQIVNPPRRNFQRTQKRLPPL
PLPLGEMYSKLLSIGQVAPVPLTPLQPLYPNWYKPDLTCEYHAGIAGHNIESYNAFKNKLLQLIKAGWITFDDAPNVNSN
PLPNHAASSGGVNVVGVEGKKERVLKVSMERLYGMLVxSGYLPEFEPVMNENNYCKFHGEVGHHIDDCQEFHQEVKRMLT
FGMIRIESEEESSEVGMIGRQGKKMEVCRLQPTVGGPPKLILTKPVCTNSGSYGTMPYNYGYSFNIKNPTPIFHTEIGGL
TRSGRCFTPEELERxRKAKGKEIVDAFKGMEVNKPISEDESNEFLKLMKHSEYSVVDQLKKTPARISLMSLILSSELHRK
ALQKVLNEAYVPQDITQDTMEHLVGRIQASNYLYFTEDELDPEGTGHNKPLYITVKYKGCLIDKVLMDNGSALNVLPRHI
LDEMPIDATYMRPSTMTARAYDGSPRQVIGTIDIKLFVGPQMFLITLQVMDIHPSYSMLLGRPWIPASKAVTSSLHQCLK
YIINGTLVKVKAEETLSMIRNVSVPYIEAEDCKDGNLHAFEIVNIEWIPENTVLRRPIISDTARMIAKCFFKHGLPFQNA
PITGNLKRVNMMKINAADKRFGLGFKPKKDDHKRAVRIKRERRLARMEGRKPEEEDIVIPPIHVSFPKSAYVMKPENMME
VLGQELVVMDINNVDEGKGKGWNCNDEPKTTKEDELLPQLTIHSLEEALTNAFVRKLLVDEVFQNWEIEEAPVIFKK
>Gypsy17_AG_gag#LTR/Gypsy 1761-3125 [Anopheles genus]
NPNFDHMTKLKEIVRRLELIHKTLQQNKGNIRQCALATYRLQVDEIYSVFRKEIETNYDKYSDSEIKFYNNIIQNLITNI
VEKVNNETINTDNNTSDLNETLKSHKKLTLKTTAHVIISILSIYKRQKQIVPTANIDHTAIKTNTSVDSSYKPNMDALEI
LKTATSLIPTFSGRYDEAEAMLAALETMKEAVDEQHHRLIMRVVQSKLKGKGRKIIGKTVTNIEDALAKIGAYVKKTESP
EDIATAIHALKQKTTPKDFGEEIQALAEELEQAYLGEDVAPALATAKTNKIAMAAFGKGLKKEIHQAIVLSGTIPTLDAA
IRAIISIDKTNQSTQDKKSDNRQNGQENRYSSNQRQTNTRGIDQRQNNNNWRFPPQQNNNSWRSQPQQNNNNWRSPQTQN
GRQGAGFNTRNRQPAGPNFLGQREPQRAILYTQMETQNPQVDQPSTSHYGQHTQ
>Gypsy40_DR#LTR/Gypsy 160-4920 [Danio rerio]
MEVFSLEEFVTKPTIEQINVCRKQDLLLIADHYQIVVNKQSRKAEIKGKILLKLHEKSVLLLSNVVEETGENISQDDVAV
AHLSPGAEDDPNGQVDVGAEAKAGLPVFDPFSPISSGYRDDARLKVRLARLQYEAQEKAHARQAEINLRLEIRKLEIEAE
KVIKLRQLDLEAMKISSGSAAQPNSAPASVSSDVAPPTDPAPTAFDIGKHIALVPPFRESEVDSYFCAFERIAISLRWPK
EVWSLLLQCKLFGKAQEVCSTLSVEDSLKYENVKSAILRVYELVPEAYRQRFRACKKTSAQTFVEFAREKGILFDKWCSA
SKVADFNSLRELMLMEEFKNCLPERVVVYLNEQKVTSLSQAAVLADEFILTHKNVFATARSEKSQPNSSQTSRPKSSTTR
EERECYYCHKQGHVIADCLVLKRKQQPQVKSVGFLKTHTAFNASDDDKIDDNYKPFILEGFISLSENGEDQIKVKILRDT
GALQSFIVADKLKLSDDTFCGSSVIVQGIEMNCIKAPLHRIHLKSDLCTGFVRVAVRPSLPVKGIDVILGNDLAGGKVMP
VLEVTEKPDLCAQSDLTDAYPDVFPACAVTRAQTRKLGNVIELADSFFSPLLAGEKIPDSETSREKQNTQNVDVVTDTET
LKLPVSREKIMVAQKEDKSLAPIFDSAVTKDVIKEMKRGFFIDNELLMRKWCTNPGSDFDWDAVYQIVVPSPYRQHVLYL
AHDHQLAGHLGITKTYNRILKHFFWPGLKKDVVKYCRVCHTCQIVGKPNQVIPPAPLTPIPVIGDPFEHIIVDCVGPLPK
TKSGNQFLLTIMCAATRFPEAVPLRKITAPVIVKALIKFFSTFGLPKIIQSDQGTNFLSKLFKQILQSLDITHRVSSAYH
PESQGALERFHQTLKSMLRKYCLSTDKNWDEGVPLVLFAARETIQESLGFSPAQLVFSHEIRGPLKVLKERMLSVETSKK
TNILDYVSQFRDRLHSACKLAKESLASAQKGMKRKYDRKAVARSFAVGDKVLVLLPVPGSSLSARFAGPYEIKKKLSETD
YMIHTPDRKRQTRVCHINMLKVYHSKETGKDAPVSKPESVVPTVVAVAEQTSAVMSDADDGVILRDLPQSSVRLVNSEIL
SDLNSYLKHLPADQKTDIIKLISDFNCLFGDVPTQTNVLKHDINVDGARPIKQHAYRLNMAKRSIMRQEVNYLLENKLAK
PSSSPWSSPCLLVPKPDGTYRFCTDYRKVNAVTVPDSYPLPRMEDCVDNVGSARFVSKLDMLKGYWQIPLTDRASDISAF
VTPDSFMQYNSMAFGLRNAPATFQRLVNTVLADIPNCSAYLDDIVVYSMSWRDHVHSLREIFTRLSNASLTLNLAKCEFG
QATVTYLGKEVGQGQVRPVDAKVTAISQFPVPTTRRELRRFLGMAGYYRSFCKNFSTVVNPLTSLLSPSTSYVWSDACQS
AFDSVKALLCNAPVLAAPDCASPFKLEIDASAVGSGAVLLQEDETGIDHPVSYFSRKFNKHQLNYSTIEKETLALLFALQ
HFEVYVGSSCLPVIVYTDHNPLVFLSRMYNHNQRLMRWSLLVQNYNLDIRHKKGIDNVMADALSRA
>Gypsy42_DR#LTR/Gypsy 170-4924 via tfasty with Gypsy-33_DR, 1 stopcodon. [Danio rerio]
MAEFDLEHFINAPTIEQLDKCRKDDLIRVAEHFKIKVSKQQLKREIKSVVVHNLGELGVLQLAAECQQSLHGDDVCTLHS
GGEEASEAAAEEASKSKAGLPPFEPFSPTLVESGGDARFKLRLAKVQMEERDRVAQRHAEMELRLEIRRLEIEADKEVKL
RELEIKAAKDAPVSPGQVPPVQATTFTTGSGFSSSTFDVSKYIPLVSQFRESKVDSYFNVFERVASALHWSKEIWPLLLQ
CKLSGKAQEVCAALSLEDSLNYDVVKAAVLRAYELVPEAYRQRFRNHKKNANQTFVEFTREKCVLFDKWCTSSKVSNFQT
LRELILLEEFKSCVPDRVVVYLNEQKVTSLSEASVLADEFALTHKNVFTPARVEKTLVTSISKSPTHFKNPTVKTGEERA
CFYCHKIGHLISECVLLKRKQQSAVPKSVAFVKTIDVGETPAVSDRLDADPGYKPFLLEGFVSVDKSTSPVKITILRDTG
AMISFIAADVLPLSDETFCGSHILVRGIEMGVTKVPLHEIYLQSDLFTGSVKVGVRESLPVPGVHFILGNDLAGGKFMPV
LEVCEKPVMSDHSDELKVDYPDVFPACAVTRAQARKFADADDLTSTFIAPSFENDVLMTENKTDDRCDVQDTKRDLKLQV
TREKIIAAQKEDGSLGNIFSLVVPLEVANRRKIAFYIDNGLLMRKWCPDITNEWAVVNQIVIPLCYRQMVLSLAHDHDLS
GRLGIKKTYQRILKHFFWPRLKSDVAKFCRTCKACQFSGKPNQVIPRAPLVPIPVIGEPFSHVIVDCVGPLPKTKAGNQY
LLTIMCTATRFPEAIPLRKITAPVVVKALVKFFSTFGLPRVVQTDQGTNFLSKLFAQVLKTLNISHRTSSAYHPESQGAL
ERFHQTLKSMLRKYCMDTEKDWDEGTPLVLFAIREAVQDSLGFSPAQLIFSPSVRGPLKVLEENILSPVTSAKTNVLDYV
SKFRERLHQACSFAKESLVNAQITMKKKFDRASVLRNFNEGDQVLVLLPVVGSAFSACFAGPYTVIKKLSDTDYVIDTPD
RRKKSRVCHINMLKAYHSRESIRTDQKENENDFSTTALVSEVLYSESNSSEDDGVIVRHDYQQCARLSNSEVLADLDSHL
HLPDSQSNDIKELISSFPMIFSDVPSCTSVLQHDIDVGNARPIKQNAYRVSAAKRAVMKAEVDYLLNHGLAKPSCSPWSS
PCLLVTKSDGTARFCTDYRKLNAVTVPDCFPLPRMEDCVDNIGSAKFVSKLDLLKGFWQIPLTARASDLSAFVTPDNFTQ
YCVMAFGMRNAPATIxRLINCVLAGVENCNAYLDDVVIYSHSWANHISTLREVFMRFEKASLTVNLAKCEFGQATITYLG
KEVGHGKVKPVNAKINAIAEFPIPTTRKELRRFLGMAGYYRNFCKNFSTVANPLTSLLSPSCKFAWSDDCQQAFENIKAL
LCSAPVFAAPDATKPFTLEIDASTVGAGAVLIQEDARGIEHPVCYFSRKFNKHQVNYSTIEKETLALLMSLQFFDVYVSS
SGFPVTVFTDHNPLVFLGKMYNHNQRLMRWSLVTQGYNLVIKHKRGSENIIADALSRAGIVGDLE
>Gypsy42_AG_pol#LTR/Gypsy 1560-4976 [Anopheles genus]
TKFSLGFAINQHNIKYCSNFLPYIKVKDSKTNRQIRMLIDTGANKNIIRPGIIKNTIKTEQVSIKNIFGTKIIQEKAICK
LLGPNIPAQTYYIMEFHDFFDGIIGTEFLSQTNTVIDFKNNVVVINETKIWFEKLFSSKKFYHHTISIETDQNGDWCVPT
FENLSENIIIEPGLYSSIDNKTFVKVLSTSKTTPHIPKLHFTVNNFETLTPIPSACNDIPTKKIIETLIRTDHLSFYEKS
KLFETVIKNHNVLLKLNEKLTSTTIIKHKINTTDDLPVYTKTYRYPHVYKQDVETQIRDMLDSGIIQPSTSPYSSPIWVV
QKKMDASGKKKVRVVIDYRKLNDKTINDKFPMPEIEDILDSLGKSQYFTILDLKSGFHQIEMHPEHQEKTAFSTSHGHFE
FTRMPFGLKNAPATFQRAMNNILAELIGKICYVYLDDIVIVGTNLEDHLKNVSTVLGRLAQFNLKIQLDKCEFLKRETEF
LGHIISPDGIRPNPEKVKKILDWPIPSNEKQIRQFLGLSGYYRRFIKDYSKITKHLTKYLKKDQTININDPEYIDSFSKL
KETIASDQILAYPDFNLPFVLTTDASDFAVGAVLSQIQNKVERPIAFASRTLNKAEINYSTIEKEALAIIWAIRKYKAYL
YGNEFKLFTDHKPLTFIKTSIKNNRILNWRLELENYQYSVEYKEGRANVVADALSRKTENTNEINSTNTTILATNHSGST
SDDFYIKSSERPLNYYRNQIVFELVAQHEDLIEIPFPNYKRTIIRRTDYDESKITDILRKFHNGKQTAILASQNLIQIIQ
NSYKNHFSCSGYIVMTHSQVKDVASVEEQNQLITREHERAHRGIHEIENQMKRSYFFPKMHDRIKSAINACPVCNMHKYE
RKPYNIKISPRAATDKPMERGHMDIFSINSKSFLSLADSFSKFAQMIPIDTKNLVDVKNALAKYFSTFGIPLQIITDHET
TFRSIQLKNFLCNLGCSLTYASSSESNGQVEKTHSTIIEIYNTNKHKFVDMDTEALIPIAVSLYNATVHSATGYTPNEIL
FNQTNEMRPITIHEQAEKIFANAKTNIERSRQNQMKGNIRKETPPLIREGQEVYVKPNIRKKLDPRARNTTVNNVTDRTF
ENSRHIKRHKNKIHRIRS
>Gypsy16-PTR#LTR/Gypsy 23-4417 [Populus trichocarpa]
MTTNKERIENLEAALGGLQDNFNKMELGVTDKLQQLEAAISRISEVLLPRQEPNSSNVQERSGQAFGARSRDTTDGGRSM
FSSKLAKLEFPKYFGTDPTEWLTRVDQFFEYQGTLEAQKVSLASFHLESEANQWWQWLRKAYHEDKKEVSWEIFVEELWA
RFGPTDCEDFDESLSKIRQTGSLREYQKEFERLGNRVQGWTPKALVGTFMGGLKPEIADGIRMFKPKSLKEAISLARMRD
EQMIRQEKPHRPLYRTSDNSDRPFKHTDVSNRPFTRSVGVSSPFKTQSASPMKRLTWSEMQQRRAQGLCFNCDERFVLGH
KCKGPQLLLLESSYEDDEIDNEEPEISLHALTGWSTARTMRVSAKVGHHELIVLIDSGSTHNFINERVAEILHLPVVPTE
PFAVKVANGVPLRCQGRFDNVHVLLQGIPFTLTLYSLPLIGLDMVLGVQWLEQLGTVGCDWKRMTMKFSWMNQHHQLEGI
GNQPIQPIQVQALSKELKQGNSIFAVCLQPAGEETPQMNRPDMQQLLQEFADIHQEPQQLPPQREIDHHITLKEGTEPIN
VRPYRYAYFQKAEIEKQVHDMLKLGLIRSSTSPFSSPVLLVKKKDGTWRFCTDYRALNAATIKDRFPIPTVDDMLDELYG
AAFFTKLDLRSGYHQVRVNPLDIHKTAFRTHNGHYEYLVMPFGLCNAPSTFQAVMNSIFRPYLRKFVLVFFDDILIYSPN
WTMHIEHVKTAFEILRHHQFFIKLNKCVFGQQEVEYLSHIVTSQGVKADKGKIQSMLNWPCPTNVSELRGFLGLTGYYRK
FVRNYGIIARPLTNLLKKGLFRWTEEADAAFLALKQAMTSTPTLAMPNFNEPFVIETDASGTGIGAVLTQHGRPIAFMSR
ALGVTKLSWSTYAKEMLAIVQAIRLWRPYLLGRKFFIHTDHCSLKYLMEQRIVTPEQQKWVSKLVGYDYEITYKPGKENS
AADALSRVIGSPSLNALFVPQASLWQTLKEEANQHPYMIRIGKLATANPGAPYKWLNGLVCYNNRVVIPPNSTLVQLLLQ
EFHDSPSGGHSGVLRTYKRMAQQFYWPSMHRVVQQYVASCTVCQKNKADTLSPAGLLQPLPVPCQIWDDITMDFIEGLPP
SNGKSTIFVVVDRLSKSAHFLALAHPYTAKMVAEKFVEGIVKLHGMPKSIISDRDPIFISHFWREFFKMSGTKLHMSSAY
HPQTDDQSEVVNRCVEQYLRCFVSQQPRKWCSFLAWAEFWYNTTFHSSIGMSPFQALYGRPPPSIPNYQIGASSVHEVDQ
TMISRTSLLRQLKINLQAAINRMKQGADSKRRDVNFQVGDLVFLKLHPYRQQSLFRRPAQKLASRFYGPYKVEEKVGKVA
YKLQLPTDARIHPVFHVSLLKKQVGESTVTSAELPPITDDGEFVLKPIAVLETRWVRKGSTFVEELLVQWEHLSKEDATW
ENAQELRDKFLSFNLEDKVLIQDRG
>Gypsy10_Dya_pol#LTR/Gypsy 3909-7155 via tfasty with Gypsy12_pol, 1 frameshift and 1 stopcodon. [Drosophila yakuba]
VFKKLQSRHVEVAIQTEDFDCLPESIHNDRRVRDAANVAQPPIPDEQQLPASPLLHSKIQTLKEIKHEETYLQNIGKRKA
RNSSRIKAFWQNVKSCRIGVNYIKSLPEGPKDPRPFLPIRLFNRTVYGLLDSGASASCVGGNLAREVEAAGNSSAINSSA
TTADGRSQQIRGHIQTEVEYGDQKKVLKIYIVPSLKQDLYLGIDFWKLYDLLPRRLIISELDSTEVDFKVKVDQHKLSEM
DKARLTNVINCFPSFSQDGLGKTNLISHSIDVGMAKPIKQRHFPVSPAVEKAMYSEIDRMLQLGVIEESDSSWSSPIVIV
TKPGKVRICLDSRKVNSFTEKDAYPLPQISGILSRLPKAEYITSLDLKDAYWQVPLEKASRDKTAFTVPGRPLYQFKVMP
FGLCNATSTMSRLMDKVVPAHLRNEVFIYLDDLLVVSSSFERHLEVLREVALQIRRAGLTINIGKSHFCMLRVRYLGHII
GDGGIRTDPEKVAAIRNFPLPKTLRSLRSFMGLCGWYRKFVPNFASLAAPLTDLMTTKRRFSLTEAAVESFEKLKQCLSE
APVLCSPDFSKPFAIHCDASKTGVGAVLAQVSEEGDERPIAFISKKLNKAQQNYTVTEQECLAAIVALKSFRAYVEGHRF
KIITDHASLKWLMSNHDLNSRLARWALALQRYDFAIEHRKGSMNVVPDSLSRVNEDAVTAIDLREGLLVDLNSDHFKSAE
YTELVQKVSANQKNFPDLRTDSGYIYRKAEHLTGEQVHVEYAWKLWVPKELVSEVLSHAHDNSLSAHGGIHKTIERVRRY
YFWPGLVADVKAYINACEVCKTTKAPNYVLRPPLGKAPESQRFFQRLFIDFLGPYPRSRSGNIGVFIVLDHFSKYVFLKP
VKKIDSGVVIKYLEGxLFMSYGTPETIVSDNGSQFRSHAFQKLMQLYGITHTFTAVHSPQANASERVNRSVIAAIRAYVR
PDQKDWDEYLNKISCALRSSVHSSLGTSPYYMVFGQHMVTSASTYSLLRKLNLLDDRSLKFNRSDSFDIVREKACKKMME
KHSENEKKYNLRSRVVAYTEGQEVFREILSKAVSKQDTTQNL
>Gypsy10_Dya_gag#LTR/Gypsy 2506-3906 via tfasty with Gypsy12_gag, 1 stopcodon. [Drosophila yakuba]
MLGLDRSPERGADSSPKVVCPLCTADINPAEGFITSCQHEFHKRCIEAYWKKSAQCPVCKVASRPEIPKPQEVTERQTRS
GSRKRQPVDTVGQQVSGNIASTSGQSTQANNIGGSNSNSLTDNAMILLDMEQRLLATLSEKMTDLIQNSITETITRALAS
TSGGNDNSQREHFSHRSLSNGDRVETRNETGSNSRQVLSAPGSPASQRSTTSDLVNRPDKVVHILNGWKIKFSGKGVYVD
NFIYRVNTLTxETLDNNVDLLCKHASVLFEGKANEFYWRYHKAHGDIQWNSFCTALRLQFRDSRDDCDIEELIRNSKQKQ
NESFDSFYDTISGLVDQLEHPWTTSKLIRVLRNNLRPEIRHEILNIDIKAVSDLRQICRRRETFLADVKRVSGYVRSTPF
KREVAEFSQEYDTQLESEPENEADVEAFSLLCWNCRKEGHRYQDCVSERRIFCYGCGAANTYKPSCN
>Gypsy12-NVi#LTR/Gypsy 407-4162 (not positions in consensus, as the LTR and int are improperly defined) [Nasonia vitripennis]
MSDGQQTKVLVGWVYNLRKDQVEEELKKRNVDFDENSNLNELRKLLAQTLRSEKNLQDEQVDQKEENPSHENVHEETETE
SSHSDTESEMSDTPKLEFRLDKGDWETFADRLEVYFLAKGTVDNKKVATALTKFDEEAFKLLKSLCAPKKPIELTYEELT
KMMKEQLNPAPSEVMERCNFNRAKQEQTESIADFAARLKKLALNCNFKDQLQTALRDQLVCGLKDHETRVELFKKTSLTF
DTAFTEAVAREKAVQMRRDRKKPMFLNVTINSKRIRMEIDTGVYATIFSEKVKNEFFNDLSLSQTKHSLEDYVENVLKPV
GSLENLQVTLNDKTIKLGCFVLPGKGPPLIGRQWLAAFGLWPLMANSTNSISLNKIQDCNIPSIREQLVIEFKLLFGDTP
SLFNKGKLKIYLKENAKPIALKARHVAYAMKPLVEDEISRLVRLGHLVPVESSEWATPIVIVNKSDNTIRICGDYKLSIN
EYIIVNKHPLPRIEDVFAAMQGGKKFTELDLAHAYMQFEVEESSQQYLTIATHLGLYRYTKMPEGISTCPGDFQTFIENT
IRGVKNTTAYLDNIYVTGSTYEEHLENLKQVCTRLQESGLRVRPEKCKIIKKKIELLGFAIDKDGLHKSSSKVKAIVEAP
KPENAKQLLSILGLINFYERFLEHRSDKLKPLYDCANSKEFFWSEACDNAFKVIKEELISPRVLAHYDPNEQLVLACDAS
DYGLSAILSHKYKDGSERPIAYASKRIPKKEMHRAIIDKEAAAIVFGFKKFYDYIFGKEIILRTDHEPLKRIFGPKTGIP
LTATSRLQRWAYLLSGFKYKIEHIKSKDNGNCDVLSRLPIEDDSDVFESNYTAINYITSELDILDSNAIAAETKSCKVLS
KIMMYITSDWPSYDKLTDHEKKYYSKRTEFFVDENCILWGHRVVVPMSLQPFVLKELHLSHLGIVKIKMLARSYVWWPGI
DNDIEQLVNSCKVCLEERKKPPNIPLTPWPWPNKAWSRIHCDFLGPFMGHMYLVVIDAHSKWPEVIDFHNNTKAEKLISK
FRDIFARHGLANHIVTDNGPQFTSDLFQNYLKKLGIKHTFSPPYHPATNGAAENFVGIFKDKVNKIVKGGRALEDAINIF
LFDYRSVPHSTTGKSPAFLMTKREMRTRFDSLRPRTENTVYEKQHAQIVQRKGSRRVSLEEGDTIMIDNYGKGDKKIEGT
IVKQLSPSTYDVQIKPDKICKRHADQIISVAPGKKTVRRSERLKNKCKVSS
>Gypsy14_VC_pol#LTR/Gypsy 1647-5548 Gypsy8_VC_pol almost identical [Volvox carteri]
EFAQSFSCGTRTGDMNSHDFQIIDYELLRQLERRIGRTFSLDAAANDDGSNSVCKMFASPTRSFLNSDCSGHTIWMNPPT
KLLSDFLRHYHRCKSYDPSISSCILIPTEQKRIRPYLKDMTRLMILPSGTQLYRSYRVGCQDPPPETSTYEIWWDPPKGK
PIEPKCSITETDTQLHLFAGRLGANAVRVLPDTGATHCFVSQLMATKLGLRILPTPLAPVRLADQSTVPILGECRARLRL
GSFGTDLRLLVLPALTVSADVILGTNFLTRYDAQLRPARSELSLLRPNGVRCTLRAMHAPSSSVSESPKPEFLLLERAPA
RTSVVSAERVFRDLFESPGSRGLLVVVKPLTESTAHPPTSPIPQVNSLELPPEIETNRTLATILHEYADVFAPISGLPPD
RGVHHTIPLEPGAQPIYRPQYRLTPLEKEEVEKQVKDLLAKGFIQPSTSPFGAPILFVTKKTGELRMCIDYRALNRLTIK
NKYPLPRIDDTLDRLAGARIFSALDLASGYHQLRIHPDDVPKSAFNTPLGHFEWLVLPFGLSNAPATFQATMNRIFAPYM
HRFVTVYLDDILIFSKTPEEHAEHLRLVLETLRKHQLHAKLSKCEFWKTEVKYLGHIVGSAGIRMDPNKVDTIRNWPQPK
DLSELRAFVGLANYFRRFIRNFASLAAPLTDLFGKQRLPDEWPPQALAAFQSIKECLSTDVLLNYPDFSKPFELVSDALL
NGTGAVLLQDGRPIAFTSKKFSAAERNYSTGEQELLGVVNALHEWRCYLQSNIPFTLVTDHHPLTYLKTQAHLSRRQARW
VEFLEQFTFEWVYRPGKLNVVADALSRHPNLAMILCAVPPVTPSSDLPISSRIAEATRKDAWFQNPNNTRKFYEHPGGFF
VLEEEGNHRIVVPNDPILKHEIIARSHSDRLSGHPSSGLPAGELHPLPIPDMPWESISMDFIVGLPKTKRQHDAILVFVD
RLTKMVHLAPCRTTATAEQCADMMFHHVVRLHGMPQKIISDRDPRFKNLFLPALLNRAGAKQNTSTAFHPETDGQTERIN
RILGDMLRQYVSTDTEQWDRYLDAAEFAINNLRNRTTGQSPFFLNYGFHPRTPLQLELADTVPAAKVYVDTFHERLKLAK
RFYQSAQDRAVQQESKKRRTVTLHVGQQVLLSTKNLSIQKGTRKLMPRWIGPFPITEMINSVTFRLDLPPEYRFHDVFHV
SLLRPYCADVPDGPIQPPKALELDPVTSKPVWTIERILKHETRKLRKRTLYRFLVKWKGHTDENNTWLDSADISDRNLIT
EYWNAHPEHSEDAGSWGEEA
>Gypsy14-PTR#LTR/Gypsy 54-4776 via tfasty with IBGypsy1_pol, 1 frameshift. BREAKUP? [Populus trichocarpa]
MVLTKSGYQTIGEPLSVLQSHRHSTRKATTPSSMSSEEEEVTPDQSNLSDKVDRLTTQLEAVLKWIQSQPSSSASPGLKN
VDDGISPPRARLTTEKEKSQDEDAHPRFVTGIRPQPFKVEARIDIPTFDGTIDAEKLDSWVDQLETYFTLYGFSSGEKVA
FARLKLTSHALAWWNAFLKNNDDREISWKEFTQLLQQEFYPMGYVQDRWTRWHNLRQRQNQSVQEYTTEFHRLAVTLGIG
LDHEDVFTKFVAGLWQHIQNELRLYQAVNISAASSIAMAIEQKNKPRGQRPTDNDKERNSGNHNFKKFTQGNPSSVSKST
KFCEHCRVSGHDKATCWKLRPDLFPTKWKKGRQGQAHNDNNNLNDHIELGQMEEADMSLSLMAMPKETTSNLLTPPDEKE
ELFTLRIQVKQEIIDAIVDTGSQKNLISASLVQKLGLETNPHPKPYPLGWIQKDVELKIDRQCRFRFAITSQYIDEVTCE
VVPLDICQVIFGNPYLWERDAIYHRRAQQYHLVKDGKTYIVHKDRSSQKADLVTACQARRMINASQKFVLMMIRPLTDEV
TPSRFTLSCKAIDNKLNELLNKYTNLFAEVGGLPPKRAIEHEIQLISDSTLPNICMYRNSVLENEEIKKQVTELLDTGVI
KPSSSPCGSPIVLVPKKDGGWRMCIDYRALNKITVKNRYPLPRIDDLLDQLRHATIFTKLDLKSGYHQVPIRKEDSWKTA
FKTRQGLFEWLVMPFGLCNAPATFMRLMNDVLRPFIDHFVIVYLDDILIYSCSLEEHLVHVQQVFAVLEEHHLRLNRKKC
EFGKKTLIYLGFIVGGGELQVDPAKVQVITEWPRPRTVTDVRSFMGACQYLRKFIQNFSLLASPLHSLTKANQAFVWTKA
HEDTFQLLKRKISEAPVLALPDLQKPFEIEGDASGYVMGAVLMQGGRPVAYHSEMFQGAAKNYPTYDKELLALHQAVKPF
EIEGDASGYAMGAVLMQGGRPVAYHSEMFQGAAKNYPTYDKELLALHQAVKHWRVYLLGKETVVHTDHQPLQYLQSQARL
QQARHMKWMTYLQQFHLVIKYKKGSHNKLADMLSRPPVTAICLSVFMQVHPALHEEYVDWYKEDPDFQSTWEEVLSSRPS
EFMLRDGLLYKGKLLCIPRSDERVRYIREAHTSKIAGHFGVTKTLQNLSRYVFWPRIQHDVARFIRGCVLCSTSKPANRK
VGLYTPLPVPTRPWESISMDFLGGLPMTRRGNDYLFVVVDRFSKMVVLMPCKKTITSDGAARLFFENVWKLFGLPNSIIS
DRDSRFLSKFWCALWAMMDTKLKRSTAFHPQTDGQTEVVNRTVVHLLRGYNARHPKTWDESIPFLQFAINHAVHGSTNKS
PAEVCLGFLPQSPFDLEFTIESNSALDKGEGERLRAQRFVDQIRKIHSEVEQQLTKAQQKYKERHDRHRVQGHFQEGDLV
WLHLGKDRLRGVGKKLKPIRYGPFKILRKIGDNACQLELPAYMEMYSVVNVDKLKLFEPSMLDDEPDGTLPTVEDLVTEQ
EIILSEDTIVERKTTTTRRGERESFRIGSKGQRPSKAKWFSRETGQAQFPHLQF
>Gyp_MT_gag#LTR/Gypsy 2379-3815 (1 stopcodon) [Medicago truncatula]
MHHLAFHSLKSKSHTNFLLQKKVSSFQMVAPRIHYKATHTHYTRAAVKRKMDHLEQENRALYEEVAAMQIKMGEMAEVIK
TMAEAQAQVLAQAQAQALAQAQAHAQAQAPPPPPIRTQVEASSSAIPEWTICADTPTHSAPQRSTPWFPPFTAGEIFRPI
ACEAPMPTSQYATHVPPPFATIPQATMTYSALAIHAIPQDNKPIFHSKSMKAYGQVEDLQEKYDEMYREMKALRGKERFG
KTAYDLCLVPNVQIPHKFKVPDFEKYKGNSCPEEHLTMYARRMSAYAKDDQVLIYYFQESLASPVSKWYINLDKTKIQTF
HDLCEAFVEQYNYNVEMAPDRSDLQAMTQGVKETFKEYAQRWRDVAAQVSPRIEEKEMTKLFLKTLSQFYYEKMVGSTPK
NFAEMVGMGVQLEEGVREGRLVKDGASASGTKKFGNHFPRKKEHDVNVVAHGRAQQTYPIYQHIAAITPTADVIQPPNSX
PRFPQYPQQNPQQQYPQPTYQQRPYQQQPYQQQQPRPQKMQIDPIPVTYAELLPGLLRKNLVQTKPPPPVPERMPAWYRL
DQTCDFHQGAPCHNIESCYAFKYAVQRLINDKKITFTDSAPNIQTNLLPNYGAATVNMVGNCQETHPILDVQHIRTPLVP
LHAKLCKVNLFKHDHDVCKVCLLNPWGCQKVKDDIQRLLNQGGLVVERKCDDVCVITPEEPLEIFYDSRKTFAAPLVICF
PGPIPYTSEKAIPYKYNDTMIEGGREVPIPPLPSVGNIAEDSRVLRNGRVVPIVFPKKVSIPVIEEAQAKDSSAVKEVSQ
SNGAGASTEFDEILKLIKKSEYRVIDQLMQTPSKISIMSLLLNSEAHKEALMKVLEQAFVDYDVSVSQFGGIVGNITACN
NLSFSDEELPAEGRNHNLALHISVNCKTDALSNVLVDTGSSLNVMAKTTYAQLSYQGTPLRRSGVMVKAFDGSRKDVLGE
VVLPITIGPQVFQINFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLKFVRNGKLVTVNGEEALLVSHLSSFSFIGADS
VEGTPFQGFTMEEESTRKSEASISSLKDAQKVIQAGGSASWGKLIELPKNKRREGLGFFPSADLSKTKTVVEPIRGTFHS
SGFIHAITKDDPEGVPRSFVTQGGSSRNWVVVDVPFIAHLSK
>Gyp3_Cis#LTR/Gypsy 111-4988 [Ciona savignyi]
MAFNFLMSPPVYTPGQNIGDFIDIFSSYCDGINANEGVRRHMFXTAIDADLKWQIQENDNSIFELSLSTILQRARQCKNG
TVQLEKHRNNLFSRRQGMDERTKDFIYAVKSMGDLAYPEPNEAKDEVMYLVLVNGLQDRQLARTIPASINYRREFWAASE
VILREGEQAPPDQVMPLEMANASHRDDERLRNIMDKLENMCIEMDNMKKQMVRQERPSENHTHQHQRSTRNRPEVRPPFR
ASGRNRKCFACGTFGHIRSQCRRTNIMDGQAVVTNPPVPRGKILNRREQKIDMPKTLHSSRRGPSTEPNRFATIMVGETV
MCALVDTGADITLIKKSCFDKCIKGTGEINILPNSYRMVGANGNCLNVAGTTELKITVGSVSTTMNVYIVEDVTHDFILG
LDFLQKHKCKICFSSNMLAIGDSRVPMLSKXFVPRRTEVSLINDYNVPANMEVCVTGKIWHEYQNESIPDMTVFIERLES
FTEKYGLLTANCITNCEGNRVKVRIANLSDEAIQLCSGVRIASLTPVSGQGNAECNIPETCVLLGNSKTADKCTCCKRYA
DVTSPKEILSVQSKEXNYRRDTDEHWQAITEGINISSALTHEQKMRALSIIKHYSAAFSTSRYDLGRTDIVEHHIDTGNV
KPVRQAPRRMGHHAKKKVEDIVQEMLDQKLIRPSTSPWSSSIVLVKKKSGETRFCVDYRQVNEVTKRDSYPIPRIDESLD
EMTGSAYFSTLDLKSGYWQIPMSPESREKTAFASHMGLFEFNVMPMGLCNAAGSFQRLMRIVLNGVEWRGVLAYLDDIIV
YARTFEEHLDRLGDVLXRIVGAGLTLKPTKCSLFQQQVNFLGHIVSSEGISCDPKKVQSVAEWPVPQSVKQVRQFVGLTS
YYRKFVKDYAAVAAPLHKLTEKNKRFTWNDECQASFTTLKRRLTTSPVLQYPDFKKPFILDTDASDSAVGCVLGQIVDGR
EHVVAYGSRTLSKAERHYSTTRKELLAVIHATKLFRCYLLGSKFLLRTDHASLRWLWKSREMYGQCARWVEYLSEYNFEL
LHRPGKNHANADALSRIYEGEDPFPYKVNREEEGHEENAAINSLHLQQSIGHTAEDMRQAQQNDPDIEPVFEWLQRGVRP
AYRKVKSSTPQTRHYWSLFPKLRLHQEIIYIKTDTLTQPGVEVERVLVPEALVHETIASLHDQQHGGAHLGVQKTTSKVA
ERFYWPNWRKSVEDFCRKCYQCILNKKPTTTIRAPLKPSNEMKPMQRIEIDVLGPLPLTRNGHQYILVACDIFTKYVRAW
SMRNQSAAETASLLFHRWFTVHGVPDVIHSDRGGNFESKLFEELLRLMGSKKSRTTAYHPAGNGGVERNNRTIMSMLRNY
VQRDERRWDEALPAVIASYNASRHXSTGISPHYLLTGRQLRLPADLLTKDPTVKENTSHWVQLEGLRNRLLLAEEVVRET
LREQRARMEKTYNTKQFGPPIEVGDTVVLTNPVIKEGKCRKFNLPYKGPYTVVEKQGDLNYIIHDKSGNAQLVHYNRLKL
CRDINIGSNEKQNNTPSEDDHITPVVTQRYSPVRIVPASTAPMMTMEEPPQANPLEIDGANXLNPDVAVGNTYRGRLRSR
TRRPTYYPDEERALSPVTPLENTRN
>Gyps2_pol#LTR/Gypsy 1466-6082  [Strongylocentrotus purpuratus]
MGPGAPKPTTSRESTIDPPTTYLSGKRKKIARLVGRKCEITCSIGGKETVILWDTSAQVSALPRKWLMEHLPQEEIRPVS
DLFPGGHLLITAANETPIPYLGYVDLLVTLNKARHTEIQVPFLVTDSEAGYGILGTNVIEEVITHPPSHTIDIAAVIAEI
LPNHPRPTITALVKLIQTPDQLSPRQVKSGRTVRCIAPGTSVISCQVHVGDLQDSVALLEPSANPTLMDALDIQPAVVEI
GKGRYSKVEVVVTNLTKANVFLPKQTTIARLEPISGIQDDALHQEQSATLSQVKGSLHQEDWLSTFNLDHLPESQHAAVL
QMLKEERGAFSIGNEDIGQISDLHMKINLSDHIPVQKNYMSIPRPLLQEVKEYINDLLKKNWIRKSSSPYSSPVVCVRKR
DGSLRLCIDYRALNAKTIPDRQPIPRIQDVLDSLGGNQWFSTLDQGKAYHQGFVAEDCKHMTAFVTPWGLYEWNRIPFGL
TNAPAVFQRCMEDCLEGLSGDICHVYLDDVLVFSPTFQGHLLHLKQVLKRVQEKGIKLKPSKCRFFEKEVKYLGRIVSAD
GHRSDPADVQAVETLREKRPKTVGELRRVLGLVGYYRKYIPNFSKQAGPLYNLLSFPPDQKTPRKKNPKKNEHILSSKQP
IEWREHHQDILNGLIDSLLKAPVMAFPDFETPFVLHTDASNDGLGAVLYQKQEGKLRVIAYASRTLTPAEKRYHLHSGKL
EFLALKWAICDRFRDYLYYSPPFTVFTDNNPLTYVLSSAKLNATGHRWVGELADFSFNIKYRPGRANADADTLSRVPLEV
SDGDEFSEEISPSTINAVCQAVKAEQYQITAWINAITASDCGNGEDSEHLSSDRFCKEDIRRAQKEDPTISYVLKVMHDG
TQPSRNERRKLPRETLQVLREWKKLEIDSDGILRRKTRHSYYQIVLPAKYKQFVYQELHNNMGHLGAEKVLHLSRERFYW
PNMEIDLTKYITQQCSCLKQRKPQRQIKANLVPIKTTQPFELVSIDFVHLERSKGGYEYILVVVDHFTRFTQAYPTRNKS
GKTAADIIFNNYCLKYGFPKRLHHDQGREFENHLFQRLQELSGISHSRTTPYHPQGNGQVERFNRTLLGMLRTLAEEQKS
NWSSYVGKVVHAYNCTRNESTGFSPFYLLFGRHPRLPIDLAFGTDVDMGGKVSIDKKDYVAQWKEQMEQAYDIAARNAGQ
SGDRRKQHYDKKAKSVILSPGDRVLVRNMRPSEGPSKLRAYWEDQIHAVVNQRGEMPVYEVKAEGGLGRIRVLHRNLLLP
CDLLPRQPPQNEPVGSIRSQGKNANRRKKAKHQDRTMSEQIGSNDDSEDDLEVILDITGEEVTQAQLDKESVNDAPQSPS
FIAEPLNFPDETHITVPQRETFTPSSPTLEGTIIPGTDAHEEEETALPRRNRHPPSRLVYDQMGEPSVRTIHADQLPTNQ
STPGINQPFPLNPQSEQWVPPSKPSPMPFFPAQTSYPGTTQPTIPNNHPLHLNFHQQAGASPYPMFPQMIPWMYPARPPY
PIGQPVWAPINFRNQPLV
>GypsI_p1#LTR/Gypsy 249-2420  [Oryza sativa]
MQQAQDVTQFQEAQSKKQRKRASAKAKKERRTLMLEARTLLKESVVAEIKGDIQAAQKLRVKASNRRSITASLRAPDPVA
TPKLPTPTVQHTEVELLEALEAVSDNLRRHISHTRRANSPHPLRNYRRKYRKVQRLHQLVSSRIAQSSLLEEDWSLDTSV
LIKKVFKFPSILEPPYDLFPDEWACEPTKIKEKVRCAIMKEYWKRRDREHLVLPGSTIFVDYNTYTPRQQSTWESCLHLS
AVGGSSDYNNNRFAVLRSEAPAPRSEDLRQELRELQDRMAQLGRRLQDHEAPRSSSTQAGGRSRRYQPSYHPQHDRRTLA
PRRTLPSTQVMHQRQTALPPRWNRWSRHQDYPTSSRLAQEWRVREAPSSQVPPHVPSSPRREVYTQRRRETNAPNPATRQ
VAPPLLPTPSIPPRRQHAPTENQRKRERRRNNRYALYRELEDLVLKHTQVRVRPDGEVHQEDERIVFRISPSLERDARYN
YLIARLTPKPRRTLDVADKNREQALTQPCPVTILQRGKGPVQATLGISLSTSARQSKENQSTPMEGVEQTPVEQVDKASR
QEEAIINPMVDVLPQQESSSVPPARVEQVAGSKNIEDPKESIVMCSALAAHYETKPNAAWVPPPVTHDFTYPSDEEIVPN
PRANFSKTFLPQLDQVHPQFSSEGSRRSTSSSQEATRASAPCLPIGTGEGSLSDRGKALRSDVSPRRYVDITTRLPHDQS
GLL
>GYPSHAN_MT_gag#LTR/Gypsy 225-2315 via tfasty with MEGY_MT, 3 stopcodons.  [Medicago truncatula]
MAERTLKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKENQEAVRLHLF
PFSLRDRASAWFHSLEVSSITSWDDMRRAFLAxFFPPSKTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKW
LIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYALIEDMAQNHYxWTNERTVTTPTPSKKEAGIYEVSEYNHLAAKVE
ALTQKIEKLNVNDVTPSSASPPCEICGISSHIGVDCQLGSAANIEQLNYAQYNQGTRPNQNFYKNPQGSYGQAAPPGYTN
NQRVAQKSSLEILLKNCMMNQNKNLQELKNQTGFLNDSLSKLNTKVDSIATHTKMLETxISQVAQQVAASSQTPGVFPGQ
PETNPKAHVNAIFLGGSKLEETITKAKSVKRESVRCLGKNGVIKSEKPLDKNKALTPLRLTKLNLEAQFTKFFNIIRKIC
IKIPYAEALSRMPLYAKFLKEIFSKKKAIDHNETIALTRDNSAIVKKPPTKLRDPGSFAIPCMIGNETLNRAWCDLGASV
SLLPLPLFTRLGLGKLKPTETTLKLADCSDIQPVGYVEDIPVKIEGIDIPTDFMVLDIDEDNACPIILGRPFLATAGAIV
DIQNGRIVFQVSDELIGFELKNYMKGPALYSCNMIKGHNVKERLLAPSTQYDLFDPF
>Gyp2_Cis_gag#LTR/Gypsy 40-717 [Ciona savignyi]
MNYIMSLEQENAVALKLPTFWTGQPRVWFQQTEAQFALKNISADQTKYFHVVAALDQSTACRLLDLLENPPEKEKYQAIK
ERLISVFCLTQSQRAKRLLHMPPLGDRMPSSLMDEMLALLGKEKECFLFRELFLERMPANIRTVLASQDFVDNRNLARQA
DELLLAGREDVDIFISKVQSRRFRPQPAREIDTDAICFFHRSFGNKARQCRPPCAFQGNCRADRP
>Erika1_TM_pol#LTR/Gypsy 2238-5608 via tfasty with BAGY1_HV_pol, 1 frameshift and 3 stopcodons. [Triticum monococcum]
MVNAAQAEDSSDVIMGNLPVNNVPAKVLFDTGASHSFLSCPFASKHNVDTEIMPKAMQVVSPGKLLTSSLVALDISITLG
DYKFLSSPVVLGNSDIDLILGMDWLSKHKAHLDCAARQIQLTHSSEDVIVFAARDNTIQLFSLNEKGELDAISQIPVVCE
YQDVFPEELPGMPPNRPVEFVIELEPGTEPVCKRPYKLGPEELKELKKQLDVQERMGLIRPSTSPWGCGVLFVKKKDGTD
RLCVDYRPLNKKTIKNKYPLANINELFEQLKGAQVFYKLDLRMGYHQIRIREQDIPKTAFRTSYGSYEYTVMSFGLANAP
PTFSRMMNFIFNPYTNDFFLVYLDDILVFSKNKEDHAKHLRLVLDKLREHQFYAKFSKCEFWLDEVLYLGHIISAKGISV
DPEKVSAIVNWEPPQNVKQLRSFLGLASYCRRFVENFSKIAKPLSNLLQKHVKYVWSPECDVAFNALKEKLITAPVLTPP
DETKPYEVFCDASLQGLGAVLMQEKKVVAYTSRQLKPNEKNYPTHDLELAAVVHALLTxRHLLLGRKVDIFTDHKSLKYI
FTQPNLNLRQTRWVEMIQEYNPSIEYTPGKANVIGDALSRKAYCNSLILKPYQPELCEAFRKLNLQVVPQGFLANLQVSP
TLEDQIRQAQLLDAMVKKVKIGIAKSQSKYKCYRLDDKDTLFFEDRMVVPKGELRKVIMNEAHNSLLSIHPGSTKMYQDL
KQTYWWTRMKREIAQFVNECDVCRRVKAEHQRPAGLLQPLAILEWKFDHIEMDFVTGFPKSKRGNDAIFVVIDKLTKVAH
FLPIKESITVAQLAELYTSRIVSLHGIPQVISSDHGSIFTSKFWDSFQKAMGTSIRFSTAFHPQTSGQVERVNQILEDML
RACVISFGMKxEDCLPYAEFSYNNSFQASSGKAPFEILYGRKCRTPLNWSETGERQLLGNDLITEAKEMCKVIRDNLKAA
RSCQKSYYDSKHCDLAFEIGDHVYLRVSPMKGTRRFGIKGKLAPRYVGPFKIVSKRGDLAYQLELPATFANVHDVFHVSQ
LRKCFKTPERTVNFEDIELQEDLSYREHPVAILEETERKTHNKAIKFLKVKWSHHSDREATWEREDHLRSEYPEFFQSxI
SGRD
>Daniela_TM_pol#LTR/Gypsy 2961-8842 via tfasty with RETRO1, 1 frameshift. [Triticum monococcum]
FLRANVEVFAWQPSDIPGVPRKVIEHHLAVCPHARPVKQKVRKQAVERQEFIAEEIKKLEAAGLVRGVLHPTWLANPVVV
RKANGKWRLCIGFTDVNKACPKDPFPLPRIDQIVDSMAGCDLLSFLDAYSGYHQIFMAEEDEEKTAFITPCGTYCFIRMP
FSLKNAGSTFARVVHVALEPQMHKNVETYMDDIVVKSKDRATLIQDLDETFANLRKINLKLNPEKCVFGVPFGKLLGFFV
SQRGIEANPDKIKAIEQIEAPKRVKDVRRLAGCVAALSRFISRSAERALPFFKILKRSGPMKWTPEAEAALQDLKKYQSS
TPTLVAPKPQEKLLLYIAATNQVVSDALVAEREADDEPATAASASSNKQGASPTSSGPDKDGSAQVREEIQKRMVQRPVY
FVSSLLQGARSRYFGVQKLLFGLLMASRKLRHYFQAHEITVVTRFPLKRILQNPEATGRIVEWALELSSFGLKFESTSTI
QSRALAEFVAEWTPTPDEEIPETSIPVKEASKERLMYFDGAFSLQGAGAGVLLVSPTGEHLKYVVQMHFPKEQATNNTTE
YEGLLAGLRIVADHGIKKLIVRGDSQLVVRQVNKNYQSPLMEAYVDEVRKLEEHFNGLQMEHVPRAQNDIADGLSKCAAL
KLPVEPGIFVLKLTRPSVTPSTVQSKKRKLISGDYFPAELPEAAAKKVPKIDAKSAKEQSAPASPRVCSVKADAPDKFCS
GKLAGERQAPAEPQALAVEAGVPAAADTPLVLVVEPQAPAWAQQIVHFLQTGELPEEQEEAERVDRQSSMYQFVDSTLYR
RRLNGVKLKCIPREDGQKLLAEIHGGICGHHIGVRALAGKAFRQGFFWPTALQDATAQVTKCEACQFHSKQIHRPAQALQ
TIPLSWPFSVWGLDILGPFPQAVGGFEYLYVAIDKFTKWPEVEPVRKVTAQSAVKFFRSIVCRFGMPNRIITNNGTQFTS
RTFMQYVQDLGAKVCFASVAHPRSNGQAERANAEVLRGIKTRTFDRLHKCGRNWIEELPVVLWSIRTTPNRATGQTPFAL
VYGAEAVLPMELVYGSPRVLAYDELEQEQLRQDDALLLEEDRLQAAVRAARYQQALRRYHSRKVNARSLEEGDLVLRRIQ
>GmGypsy10#LTR/Gypsy 1920-6515  [Glycine max]
MSLHSSSSVNGEGSTPKDPLYKILDELRSLKLWKEKQERKEKGKKRVEEISQDEREKIREEERRKIMKEMKREKHASYSS
HDSCKSLSEELSDYYRGRHSSHTKHHSQRREKDRRPQEVNISLPYFHGKDNVEAYLDWEMKVEQLFACHHISEERKVPLA
TLSFQGYALYWWTSLVXERRIHGDPPVEYWNDLKSALRKRHIPSYYERELMDKLQRLRQGSMSVEEYRQQMELLLLRAGL
REEERTSIARFLSGLNMEVRDKVELLPYRDLDELVQLCIRVEQQLKRKPSSKSYGSHSYPRKDQAHGILGAAPSKPKEDK
GKTIEKYTPKTSSQERTSNIKCFKCLGRGHIASQCPTKKTMIMRGQDIYSSQEETTSCPSSSGSEDEVRGEESSEEVYPH
EEGDLLMVRRLLGGQSCDLSQSQRENIFHTRCKILDKTCSLIVDSGSCCNCCSTRLVSKLNLTIIPHPKPYKLQWLNEQG
EMIVNQQVKVPFSIGTYKDEVNCDIVPMEAGHILLGRPWQFDRKIIYNGLTNEITLTHLGTKFVLHPQTPSQVAKDQLTM
KDKRDEEEKLEKQKKKKDSKALSSKAKGKEKEEKDSSKKIVKKENHFATKGDIKRALLLKQSFYLLLSRETSLSTATIPT
FETLPPKVQELLHEFGDIFPKEIPPGLPPLRGIEHQIDLVPGASLPNRPAYRTNPQETKEIESQVKELLEKGWVQESLSP
CXVPVLLVPKKDGTWRMCTDCRAINNITVKYRHPIPRLDDLLDELHGANIFSKIDLKSGYHQIRMKKGDEWKTAFKTKFG
LYEWLVMPFGLTNAPSTFMRLMHHVLRDFIGRFVVVYFDDILVYSRSLDDHLGHLRQVLSVLRKNTLYANIEKCTFCVDN
IVFLGFVVGRNGVQVDPEKIKAIQEWPTPKSVGDIRSFHGLASFYRRFVPNFSTIASPLNELVKKNVAFTWGEKQEQAFA
LLKEKLTKAPVLALPDFSKTFELECDASGVGVGAVLLQGGHPIAYFSEKLHSATLNYPTYDKELYALIRALQTWEHYLVS
KEFVIHSDHQSLKYIRGQSKLNKRHAKWVEYLEQFPYVIKYKKGKTNVVADALSRRHTLFCSLGAQILGFDNIRDLYALD
EHFSPIYESCGKKAQDGFYLAEGYLFKEGKLCIPQGSIRKLLVKESHEGGLMGHFGIDKTLVLLKEKFYWPHMKKDVHKH
CTRCVACLQAKSRVMPHGLYTPLPIPSAPWVDISMDFVLGLPRTQRGVDSIFVVVDRFSKMAHFIPCHKVDDASHISKLF
FXEVVRLHGLPRTIVSDRDAKFLSHFWKTLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLSTLLRALLKGNHKSWDEYLPH
VEFAYNRGVHRTTKQSPFEVVYGFNPLTPLDLIPLPLDTSFIHKEGESRSEFVKKLHERVKNQIENQTKVYSTKGNRGRK
ELVLNEGDWVWLHLRKXRFPTKRKSKLSPRGDGPFQVLERINNNAYRLDLPXEYGVSTTFNISDLIPFAGGADIEEEEXT
DLRSNPLQGXG
>Gyp1c_Cis_gag#LTR/Gypsy 600-1265 [Ciona savignyi]
ILQEWWLSNQSIDDIFFECQLQVYLCSLFNLFKKLEDCFTVKVLSAKMGNSRAAITIGNTEIVCEQINATLRHSLQYKSY
FSIRPLVSFTNSNGTLRIGQVMKNDVVYEGVRLVEHYTPGRTFKFRVNDKFYLYDNYTLEHADVHVRHKFSLTPIEEPLR
TIWFRLRKKFPCRRWDWSISAQSLVQYINRKLQRTTSFNSRMKDANETADADPHTFVGKSI
>GMR1#LTR/Gypsy  translation of AF104899 [Gadus morhua]
MQNPGTAAGPAGPRESDPSLALLTEAVLRLTQQATRDPPITAPTSRLTKLGPDDDVEAYLETFEQVATREGWPEAQWACI
VAPFLTGPAQQASQDLNPGDAGLYPALKAAVLAYYGHSLAAKALNFHEWTFDVRGLVRTQVAHQCRLARRWLVDGAGPSP
VDRSWWTTSCDTCPPTPGGAGQHHPETVDDLVRQLENWQVAQRLAAGPRPNPRATRRETPTPPSRTRPSTPPRERGEPEV
RRCYHCGQRGHLVRDCPDRQDVPMPSACTAPRDRPTCMLATCWTQGDKDSPTVPIKVMHQDTHALLDTGSAVTLVRADLA
GGRPGTPMQVSCVHGDTRTYETCHVVVRTPQGVFVARAGIVPTLPVPFLIGRDCPIFTRFWSSMRGTEGTRAARPAGRKR
RPAQRGPGARRRESPGRSPDPPRRPPPTTDQPWERPADRPPRGPRRTTRRVPEERVRRHREARPDLPGTRYARYRETEPG
PSSDTVTASERGNTPEEPESSPLTELSDFAQAGGENSARPGQFATAQHRDDALRHAWGHVVAHDGQVRDSVSHLTHPHFC
TQRGLLYRVDVRGGEVIQQLVVPRPYVSKVLFMAHTHLLGAHLGMDKTRERVVARFYWPGVRRDVARYCQECPDCQRVRP
RAVERSPLIPMPIIETPFERIALDIVGPLPRTSRGHRYLLVILDYATRYPEALPLRAATSKAYRELVLLFSRVGLPKEIL
TDQGSCFMSRVVKELLKLLQVSQLRTSVYHPQTDGLVERFNQTIKRMLKKSIEADGKNWDQLLPHVLFAIREVPQASTGF
SPFELLYGRRPRGILDLAKEAWESHPSPHRTTIEHVELVRDRMAKVWPIVRDHLTRAQQAQARVYNRGARVRNFRPGDRV
LVLVPTSECKFLAKWQGPYEVVEAVGPVNYKVRQPGRRKPTQVYHVNLLKQWRGGDDPPPTAPMALMVRPAIPEVPMGTD
LSPAQRQELGELVLQSRDVFSDVPGRTSVISHEIRTAPGVTVRIPPYRVPESRRNAIRAEVERMLKLGVIEESRSAWASP
IVLVPKPDGTHRFCNDFRRLNEVSDFDSYPMPRVDELIERLGPARYLSTLDLTKGYWQVPLAPSSREKTAFATPGGLFQY
TVLPFGVHGAPATFQRMMDQVLRPHSSYAAAYIDDIIIHSASWDEHVKHVRAVLNGLRAAGLTANPAKCRLGREETAYLG
YRVGRGNVRPQEDKVAAIREWPQPQTKKQVRSFLGLVGYYQRFIPGYATLACPLNDLTRKPSRIVQWTEAATRAFEDLRG
ALCSEPLLVTPDFNLPFTLQTDASEVGLGGVLSQAPEREEHPVTYLSRKLLPHERNYSTVEKEALAIKWAVNKLTYYLLG
HQFVLVTDHAPLKWMATAKDTNARITRWFLSLQPFSFTVEHRPGREHTNADALSRRDACGGWAPRTEGHRQRGGVCGIPP
VPRPLFGRVEAGIYRRWPTAGDIPRPPESRNRGNEEHLGGRHPGVKRRPPADRTRGVEWKRGRRRGPRPRTVSRTADTWT
TTRATPRLGCTACA
>Gypsy1-NVi_gag#LTR/Gypsy 1058-1951 (no M) [Nasonia vitripennis]
QSIKCRNHQRKEQIACRAELDAARAAANQAPGRVEAYRTPKLPVFIKADPAMWFTQVEASFRHAHITVEGTKADHIIAAL
DHEAMTAIRDIALTDPQPPDVYTQIKQRLVSSFAASAESKLRRLLKGQVLNDGKPSLILNRLRSLDDGAKCDDAIIRSVF
LEQLQPNHRAIVLASDISDLNKLATLADKIVENSPSDSRLSAVNVNSDIASLASEVKRLADSFDKVSTRLGKLENSFKAS
KGEDRSGSNSGEFKRPSRSRSSSRHSSGLCFAHRKYPDSPTSCKKWCTEYSKWASKN
>Gypsy2_TP_gag#LTR/Gypsy 61-1230 [Thalassiosira]
MSYLDSEPCINYERSWDTTETERTVALVQVWDNGTKSKVEVPIDDNTKGIEHLVMVTNEEFKLACEELQFEDEDLYIQYA
KCLKGNTKFYWDNVMGEVEDADKTTVNFPTHQIDLIQAIVGEDQRDVLHEWMETRYKKPPNVHPIQHHARTLEIFRFMDA
VPGIAPQADEATKKKWLFKSYPLKFRDEYHTSGRSLTTDTMLQVTTFMKKLYEIEERNRRIAGRKRGRSPSNYRGGGSKR
QRNCGGESNNSRDSHNDGGRSNNGNNNKQRHSRKGNNHGHGGKHNDHRNDNNRNKSRVQDDEKCPLHPNLEPGHTWLECR
QNQYGPNFRPKSDSKGNGRRTNEHRSGKRDNENGTNYFVDRKANDNMEAESSNDVHHFDLIGSMSNAGS
>Gypsy2_ST_gagpol#LTR/Gypsy 23-4321 [Xenopus (silurana) tropicalis]
MDPAEESAASPFDQISQQLASLTQAVRDLQGSYQHLQTQVQGLSDPSNPVPPAAPAMSASPSAEYTGRPFEPKVPLPDKF
SGDRRQFRTFINSCRLLFSLQPYTFSSEQTKVGVMISLLSGEPQTWAHRLLERRSSILIDANTFIHAMAQLYDDPHREVT
AEAALRSLTQGKRPVEEYVSDFRRYAADTEWNTQALKHQFRIGLSETLKDELAHVGVPQGLEELIDLSVQIDRRLRERRA
ERLQPSSMSWLSPRTSGNLQAAAHAGDTSEPMQIGLVRSALSSEERTRRRQLNLCLYCGQPGHFLKDCPTRPKGKTRCPA
MSPCVTFREPTSLSFPVVLQWPQDCLKSTVVIDSGACGCFMDLDFIKEHAVPTRPKMQPLSLRTADGSPITSGPVTLETL
PLEVFLDSKHIETISFDVVASPLFPILLGFPWLRLHNPSINWNTGDIHFDSKTCSSHLLEKSHSMAVAPATDTQFAVVPN
YLHEFKDVFDEKGADTLPPHRVYDCPIDLLPGAAIPFGRIYPLSEPELIVLKKYIDENLEKGFICPSTSPAGAGIFFVEK
KDHSLRPCIDYRQLNLITVKNRYPLPLIPELFQNLREAKIFSKLDLRGAYNLVRIRKGDEWKTAFRSRYGHFEYLVMPFG
LCNAPATFQHLVNDIFRDFLDQFVIVYLDDILVFSSSIKEHEIHMRKVFSRLREHSLFAKLEKCEFHKTSIEFLGFVIST
DGILMDPKKVSAVLNWPVPTSRKATQRFIGFSNFYRRFIRNFSKIISPITDLTSTTKRFQWSSQAQSAFDKLKELFTSAP
ILKHPDPSLPFVVEVDASETAVGAVLSQRSGLQNFLHPVAFFSKKLSPSEKNYDVSDRELLAIKVAFEEWRQYLEGSSHP
ILIFSDHRNLEYLRTAKRLRPRQARWALFFSRFNFHITYRPGSQNHKADALSRMFHDENVETQSDTILRPQNFLLLQTDL
VAKMLEQSSSVVPSDQLRNKDGLLFFKDRIFVPEALRLDVLRLIHDHPLAGHMGGRKTVDLAKRSFYWPGMIRDCNQYVL
SCEVCARFKESRTKHLGLLHPLPIPDRLWGSVSLDFIVELPHSHGFNTIFVVVDRLSKMAHFIPLTSIPSAVTTAEVFIR
EVVRLHGVPDEIISDRGVQFTSRFWRTLCNALKIKLALSTAFHPESNGQTERTNQTLEQYLRCFSSFLQDNWYELLPLAE
FAYNNSVHSSIKQTPFYANFGFHPQVLPNFPKEVSVPAVQDRLSFISNNVQLIQSAMKQAQRNFKFFADRKRRSDPEFKL
GDSVWLSTRHIKLPCPTKKLGQKFVGPFPITKQVNEVAFKLKLPSSYKIHPVFHAALLKPVVKNRFVRRSAKPPDPVPIE
GVEEFEVQSILDSRIRRGRLQYLIQWKGYSPEENSWESASDVHAPLLVRSFHKKHPEKPASTCARRSHLGGG
>Gypsy3_Dpse_pol#LTR/Gypsy 26-3187  [Drosophila pseudoobscura]
MGTEVAESIRTRAIRAQRARDRFQRRKRRRLQVCAAVHSAIRQDDRPFARVKMGPKTVMGLLDTGASVSLLGKGGLELIG
ELELKLQDIKKFSVQTAGGTPHKILGHVSTVMTYGGQKQTMELFLCPSLKQPLYLGVDFWRKFGLAPHIVGLERHKELAE
IDAEVLTRSRPTEPHELTHTQQTRLDQVKSNFRAFDTHGLGRTTLERHEIQLIEGAVPVKERFYPVSPAVQELLFAEVDE
MLRLGVIETSESPWSNRVTLVRKPGKNRLCLDARKLNKLTVKDAYPLQSIESILSRVEDTVYISSIDLKHAFWQIELEPE
SRTYTAFTVPGRPLYQFKSMPFGLCNAAQRLCRLMDRVIPQRLRSHVFVYLDDLLVISRTFEEHIHLLEEVAKCLKEANL
TIGRKKSKFGYKYLKYLGYIVGDGALRTDPEKVQAITQIPMPRNVRQIRRFLGTAGWYRRFIRNFSALSAPLTDCLKGKG
QFKLTEEAGKSFEELKKALTSAPVLHHPDFKKHFFIQCDASHVGIGAVLFQRDDEGAEHPIAFFSAKLRGAQLNYSVPEK
ECLAAVRAIEKFRAYVELMPFTVITDHASLQWLMRFKALDGRLARWSLALQAYDFDIEHRKGKENIVADMLSRPFDVDAI
DFLEFDTTAFEDEEYRRKIESVQSDEDEFPDVKVEEGLLFKRTQFGRPELEEFSWKLWIPEALTSTLIQQAHDSDAAMHG
GIARTLGRLRQFYYWPRMTVQVKAYVADCDTCKETKHSTQVHRPLMGAETRTERPIQKLYLDFLGPYPRTRSGNVVILIV
LDHMSRYVWLKALPKATSSAVIRFLHAEVFAQFGVPEIVHTDNGKQFVSAEFSQFLDRRSITHLKSGNYAPQANAAERVN
QTILAAIRTYASEDHTRWDEKLTEIQCVARSAIHTGIGTSPYFVLFGQHMFTSGRDYKLARRLGALNDAQMSPLARSDKM
EIVRDEVRGNSHEAYNRAKNRYNRKAREIRYSPGQEVYKRNFVLSKFKDNINAKLSPKYVKCRVIRSMGNSLYELETLQG
SRIGVFHAKDLKQ
>Gypsy4-SM_pol#LTR/Gypsy 3617-6950 via tfasty with GYPSM1_pol, 2 frameshifts and 2 stopcodons.  [Schmidtea mediterranea]
EIKAKRPRINILLNGRKVEALLNSGSSNTIESDDLLTMEERSNMKPTSKVMSMSHNVLNIIGKLKAELIISNQELVHYVS
VMRNSPVGCLIGIDVMEQLQGISLDLKTGRLMKGQTNEKEHKMREVFLNQTLEFPARSEVIYYADVLDVSDEECIFEPNG
MLIEKYEIPMCDEVVKVKDQTVPVRIVNQNTKPIQMKPKYKLGKLTKFEIEKTPKLSRNIKIYKEPQVISNDLTKLQKWE
FTELLKKYKMVFGKHEYDLGLTQVIEHEIPLLDETPIKLKPYRIPYIHQEESDRQIKAMKEFKIILDSSSPFSSSIVVVK
KKDGDLRFCVDYRKLYQVTRKNKYPIPVPQEMFDQMGELQFFTLIDLNKGYNQFKVKEEDRRKMAFSDGKELYEFNVLPF
GLTGAPATFQRDMNFVLRDITHALIYIDDIIIFSNTFKEHLKDGETVFRRLLKANLKIKPSKSEVVYVGHIISLNGLQPN
PENVRKIKEYPIPENVDQVRQFLGLASYYGKFIKNFSHVAQPLNVLLKKQTQFKLGKTQQEAFELLKESLIKKPILRCSN
FRIPFILMTDASNFALGAVLGQQVEGEKDHVIAYASRTLKPHKKNYSTIEKETLALVYGIATFRQYLVGRKFVVFTDHNP
LQxLIKHRDSASKLIRWSIALQEYDFEIKYRTGKSNGNVDTLSRIPVNNESKNNETNYNNTIFMAIKTANSLQxLQKDQE
NDDELNQLQKHAVTIKKESDWKHEVDEKHKYIIHDGLLKCVENENLLIVVPTKHRTTLMLIYYDGTLGGHLSARKTLSRL
KQKYYWDTIESDVRQWCHTCEVCLTKRNKGKKIKVSLKPMPVPEVPMEITAMDIVGLLPETINGNKYIIVFCDYLTKWPE
AYAMQIRKAETIAKIFVENIIFRYGAPKKLLTDQGTNFQSKLFISITELFGILKLSTSPYHPQTDGLVERFNGTLINMIS
SYVNRKQKDWDLFIKPCLFAYRNAVNERTSETSFYLMFLRRNNMPVDLKFQAPISQYIMQEKLQSVWTQAGLKIRHRQEA
YKECYDKRAHVHNIEVGDLVYVHKPEPAKGRSPKLQRPFKGPYNIYMDTTETNLKLRPQNNKKAGTIIVHAN
>Gypsy3_VC_pol#LTR/Gypsy 1304-5938 (perhaps part of gag protein) [Volvox carteri]
RSLSCPGSDPPDGGVDLAPTTQDVDFSVLSAMASLAVQNNRDLCVAEPVVSGPSVAVSIEPTPAGVPQRQAHKFLATMSS
APVKLSNASDRVVNRSQSELNAAFNVRLVTEPSRYCNTKTNSSMPVADVPPPQELCIRKHEFQHLQQLSGRHFTWDACAS
NDGSNALCPKYSSPSRSFLHDSCAGHHVWMHPPRARIQDFLRHYLRCKSIAPSTTSGGFLLPKWVTARWRPLLAGMKKLH
EYPHAGYHLFSMSSGKGKMSRVQGVSSPMEFWYDAPVESPSESAVCVATTVPFSVSPSLAMQFAGSVCQQEATILLDSGS
QAAHLLSAGFARRVGLVVKPPDGSTAAPKIVVGNGQPVPFVGFAEVPVRIQGYKARLQCAVVEFSPAFDLILGEPWISAT
GAILELCNNAARLTRISGHPVLRNGPFTPIPKPSGSSPEVLDAVAHCSLAQAMEESDTFYLCLVSAADPVPDAVNLPGEE
SSLPPSQSSVSAFAQKVSDVVRGESPADLRLKALLLEKAHLFPDQLPASLPPDRNLPPVVPLEPGARPPAQRMFRYSLPE
QEEMQRQISDLLEKGFIEPSCSPFGAPVLFVKKKDGTLRMCVDYRAVNSLTIKNRFPLPRIDDLLDRLRGATVFSSLDLT
QGYHQLRLNPSDVERTAFRTPFGHYQYKVMPFGLTNAPAVFQSAMNQALQGLPFVVVYLDDILIFSKTADEHVEHLRAVL
ERLEQRQFYCKLSKCEFFKPSVSFLGHIVSADGVRPDPRKTAVVQQWPLPKNVSELRSFLGLANYFRKFIRAYAALVKPL
TDLLSPKTKWFWSEKCDEAFLRVKEALTQAPVLALPDPREPFEVIADASDFALGAILLQRGRPVAFESRKLIPAELNYIV
TEKELLAVVHALKLWRCYLEGVKFTVVTDHEPNTAMRRKSLLSRRVARWSEFLESFDFDWQYRAGRCNPADPLSRLPGHI
DVETTKVMTISAQRLGEISAFRDTTVELKCSFPMFESSVLDGYGIDPWFKISENTVALSQRGQFWYRGDALVVPDHADLR
TTVLRLCHDHPLAGHTGVTKTLDLVRRSFWWPRLRQSVAAYCRTCDSCQRVKADTSLPGGLLLPLPIPDQKWSFVTMDFI
TDLPPDPDGNTSIYVFVDKLTKMVRFVPCKASVDSVKAAEIFVNTIVCSYGVPSVVICDRDPKFTSAFFESLFDGYQIDL
RRSSGYHPQTDGQTERANRVLEDMLRHFVSGDQSSWSRYLPMAEFAMNNSLHESTRTTPFRLMYGYEPLTPASHLVRKLG
EERAKTRLQSVVKLSNPLSVKFSTDMQNALERAKSCLAAARDRMKKWADKGRSERGLSVGDRVLLSTKHMTIKGVRKLLP
RFIGPFVVKEKINAVAYRLDLPPAVRIHDVFHVSLLRPYHDGGRVQLPPPPQIVEGELEFEVESILLHKEVKEGRRQKRF
YLMRWKGQGPEFDSWEPEANLTNCGDLLRDYWARQSDSVPTSKSQGQATLSGDADASGSKPHRAPQTTRHGRVIKKPSRF
NAFLNHLSVTSGVPESLLFPLVWR
>Gypsy1GM#LTR/Gypsy 20-4524  [Glycine max]
MADNTRMKEVYAELKKNADAITRVSDDLQNHIERLEATNHAQMEKIEVMQSTNDSQFSQLNAVMSQVLQRLQNIPMSSHG
ASNSQKEQQRSSFQVRSVKLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQMLQKTEPFSSWQ
AFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTALVNRVDGLSAEAILDCFVSGLQEEISRDVKAMEPRTLTKA
VALAKLFEEKYTSPPKTKTFSNLARNFTSNTSATQKYPPTNQKNDNPKPNLPPLLPTPSTKPFNLRNQNIKKISPAEIQL
RREKNLCYFCDEKFSPAHKCPNRQVMLLQLEETDEDQTDEQVMVTEEANMDDDTHHLSLNAMRGSNGVGTIRFTGQVGGI
AVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLVGNGQILSAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGST
WLATLGPHVADYAALTLKFFQNDKFITLQGEGNSEATQAQLHHFRRLQNTKSIEECFAIQLIQKEVPEDTLKDLPTNIDP
ELAILLHTYAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEMLVQGIIQPSNSPFSLPILLV
KKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMP
FGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKV
SGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDLLQKDSFLWNNEAEAAFVKLKKAMTEA
PVLSLPDFSQPFILETDASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQ
RSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRMFMLAWSEPHSIFLEELRARLISDPHLKQLMETY
KQGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQ
QAKSNNTLPAGLLQPLPIPQQVWEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLH
GIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTA
YHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLV
KLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQLKPFNGTAQDPYLPLPLTVTEMGPV
MQPVKILASRIIIRGHNQIEQILVQWENGLQDEATWEDIEDIKASYPTFNLEDKVVFKGEG
>Gypsy1_CS_pol#LTR/Gypsy 831-4001 gi|12958102|gb|AY013569.1| Clonorchis sinensis clone 4 LTR retrotransposon CsRn1 [Clonorchis sinensis]
MPTALFLQAAFQHPFKHPGQSVTATTVCGPPRTSRLFHITDRSSGLRFLVDTGAEVSVLPHKTPLHDSASYSLQAANGTR
IATYGERSLTLDLGLRRAFKWIFLLADVQTPIIGADFLTHYNLSVDVRNKRLLDMLTSLSVNGISAPASSTGIRVILPDS
HFADILRDFPTLTHPCQYTQPVTHSVVHHIQTKGPPVHANPRRLHPDKLPIAKHEFEHMLELGIIRTSSSHWSSPLHMVP
KKSKGDWRPCGDYRSLNNATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPDDIPKTAITTPFGLFEFTRMP
FGLRNAAQTFQRFMDEVLRGLPFVYAYLDDVLIASTSPTEHAAHLRAVFERLSTYSIRLNIDKCLFGVTSLDFLGHHIDS
TGISPLPBRILALESFPIPTTLTQLRRFIGIINYYRRFIPHCADILQPLTDLLGCKEKSVTLPSVAIAAFERAKQAIAHA
TKLSFLDTHESTKLILTTDASNAAVGAVLHQVVNNASQPLAFFSQKMQAAQTRYSTFGRELLAIYLAIRHFRHLLEGRSF
TIQTDHKPLTYAFNAKPDRYSPREIRHLDYISQFTTDIRYTPGSDNVVADALSRPDINALHPSKQLDLAKLANLQHSDPN
FLPILSFPSFQVSSIPLPLQSGSIFCDMSTGSARPIVPEAFRRVVFDHFHGFSHPGIRATRKLISARFVWPFMNKDLTSW
AKQCIACQRSKVTRHTNSPIGSFAVPDARFTHVHLDIVGPLSPSNGFTHILTMIDRFTRWPVAVPISDTSAETVAFSFLQ
HWVSNFGTPSIVTTDRGSQFQCNLFREFSTLFGFHHISTTAYHPCSNGLVERFHRYLKAALTAQMNPSSWSFSLPLILLA
IRSTIKEDLHCSPAELVYGTTLRLPGELVSTSGAQPESPVTFVTRLKQHMSDLRATPTRRSTRKEHISTDLSSTPFVFVR
HDATRKPLQPCYDGPFKVIERHSKYLVLERSGKHDTVSIDRLKPAFIEAPTTTSSNPANPATPAPTQDTPAANLTPSTSR
SGRRVRFPQHLADYET
>Gypsy1-PTR#LTR/Gypsy 120-4865 (1 stopcodon) [Populus trichocarpa]
MRSNKNQPLLPYNSEIERTARGLRKKTRKTQNSSGIMADNENPEQDTRALRDFALPQVTGIRSVIRKPRIEANNFEIKPA
ILQMIQTSIQFYGLPSDDPNAHIASFLEICDTFKHNGVTDDAIRLRLFPFSLRDRTKNWLNSMPADSVISWENLAQKFLA
KFFQPAKTAKKRIEIANFAQLESEPLYEAWERYKDLLRRCPHHGLPKWMQVQNFYNGLNASTRTLIDAASGGAFMSKSQD
DAYNLLEEMAMNNYQWPNERSIQKKTVGVHEIDAITALTAQVHSLTQQLKTTQLSANAIHTTCDFCHGNHTSEECQVGNP
FSQAEHAHFVSNYSRQNNPYSATYNPGWRNHPNFSWNNQTIMKNPAMPSSSEHMKEKSKLEEAMTQLANNTIRFMTETNT
NLQNQAASIRNLEVQVGQLANMLTGRQQGNLPSTTEINPKEQCKAITLRSGKEVEQTAGNKSAGREEEEQVAKPLQNMKK
SDPLPEPTQEIMQRIPFPQRLKKNKLDKQFSKFLDVFKKLQINIPFADGLEQMPSYVQFLKDILSNKRKLEEYETVALTE
ECSAILQKKLPPKLKDPGSFTIPCSIGNSIFEKALCDLGASINLMPLSIFKKLGLGEARPTTVTLQLADRSLKHPRGIIE
DVLVKVGKFIFPADFIILDMEEDNEIPILLGWPFLATGGALIDVKKGELRLRVNEEEVIFNLFKAIKQPDMGESCFSIQV
VDSLINDKVKLPTDPLEACLVNNVLEEDAEIAEYTCWMDSFEPNRRRYFEDLGQPAPKIKSTSEQAPVLELQPLPEHLRY
AYLxEASTYPMIVSAKPTKTEEEKLLRVLRKHKAALGWVLADIKGISPSICMHKILLEDEVKPTVEHQRRLNPTMKEVVR
KEVLKWLDAGVIYPISDSSWVSPVQVVPKKGGMTVVKDANNNLIPTRPVTGWRICMDYRKLNKATRKDHFPLPFIDQMLD
RLARHEYYCFLDGYSGYNQIAIAPEDQEKTTFTCPYGTFAFRRMPFGLCNAPATFQRCMMAIFSDMVEQIIEVFMDDFSV
FGTSFDDCLAKLALVLERCEKTNLILNWEKCHFMVKEGIVLGHRISEKGIEVDRAKIEAIDKLLPPTTVKGVRSFLGHAG
FYRRFIKDFSKISKPLCSLLLKDIKFQFDEECKTAFMLLKKKLVTAPIVIAPDWEKPFELMCDASDYAVGAVLGQRKNNV
FHTIYYASRTLNDAQLNYATTEKELLVVVYAFDKFRPYLMGNKVLVYTDHAAIRHLVSKKDAKPRLIRWILLLQEFDVEI
KDKKGTENVVADHLSRLELTQQLEPKFTVINECFPDERLLAISTNKFFPWYADYVNFLAGKIIPPDFSYQQKKKFFSEVK
HYFWEEPILYRHCADQVIRRCVPEEEMTNILKHCHTLEYGGHFGTQRTAAKVLQSGFYWPTMFKDANAFVTACDRCQHTG
NISRRNEMPLQNILEVELFDVWGIDFMGPFPSSYNNKYILLVVDYVSKWIEAIATPTNDGKVVLNFLRKNIFTRFGTPRA
IISDEGTHFCNKQFEALLSKYGVRHKRALAYHPQTNGQTEVSNREVKQILEKTVSNSRKDWA
>Gypsy1_MG_gag#LTR/Gypsy 242-1291 [Magnaporthe grisea]
MSSPPREEAAAQVPGAALQELWRTIADLQGRVQALQTGAPTVPAIAEALQATALPKRKPLRDPPLYDGVPASFTAWRCAM
EYKLRRDADFIGDHRDQYEYLWAGLETSVQKVVRSYYEVGGRDGAYRYTDFLDYLERTYDDPHKRAQALAELETLKMKPG
QSFAQFIAIFERTLATAGGLAWADEVRTNFLRFRVSPRIREACVGRGMGDGTYLGAVAIYRQVAQDLEAIELDRRFGPHR
AGAATAPRPPKDEDTPMTGVAAMGSRPNGGARGRRRPGQTQPSDTNRRDTRPRAQWVPSDEYQRRRETGACLRCGNSGHQ
VADCTYAAALRPSTVVAATTTETPGEGNE
>Gypsy1_ST#LTR/Gypsy 14-4302 [Xenopus (silurana) tropicalis]
MDPEEAVPDVGRALRGLASRMEAYESQQVRIGQVLDSILSRLPATPAVAEIPPAVVVPLPAMSSAREPRIPPPPRYSGNP
QACRGFVTQCQIQFEFQPSQFSCERAKVGYVMSRLEGKPLEWATSLWESQSPLTFDVKEFLQMFRTIFDAPGRVATASSR
LLQIRQGSLGASEYAIDFRTLMAETSWNEEAYKAVFYQGLSSRLKDDLVSRDLPDSLEDLIALAIKVDTRLKEHQADKER
SKKSHPVLAPRFQNPMIPPPSPQFTTSSSEEPMQLGKARLSAQEKLRRRLSGLCLYCGGQSHLAVSCPVKLGNTPASSKT
VVSFAGSIVPKSVEQSHQFHVPVQIRLSSQAIPVSAFLDSGAAGNFMDLAFAKKVGISLFPVTPSIRVFAIDDRPLSTDT
ITLTTGELSVQIGALHLEKMSFLIIPCPSSPVVLGLPWLRLHNPSIDWSSGQISRWSQYCQRHCLIPQPLQRVTVSSTSF
SALPSVYRDFSDVFCKKSAEFLPPHRRYDCPIDLLPGTMPPRGRTYPLSPAETAAMKEYISENLQRGFIRPSTSPAGAGF
FFVEKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYL
VMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENFLFAKLEKCTFEVPKISFLG
YIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKDFSSRIAPILSLIRKGGRPNCWPPVALEAFQSLKD
AFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLL
EGASHPVTIYTDHKNLEFLQSLKRQNPRQARWSLFFSRFNFVLTYRPGTKNRKADALSRSFSPEDRLPIEQEPIIPPFRI
IASVLPQFAEQILLSQSAAPSDTPIGMAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLRRLVWWPTIRKDVRDFVAAC
TVCATTKASHSRPCGLLHPLPIPSRPWTHLGMDFIVELPPSCGNTVIWVVIDRFSKMAHFIPLRKLPSAVELAHLFIQHI
FRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQDDWSDLLPWAEFA
HNNASHSSTGRSPFLSVYGQHPLAFPQDLLLSEVPAADDLAAHMSVIWAATKSNLEKSSLVHKTFADRRRKPSPPYKVGE
KVWLSSRNIRLKVPSPKLGPKFLGPFSISEVINPVAVRLQLPPEMRIPNVFHVSLLKPVVLNHFSSAQSPPSAVLVDGQQ
EYEVEKILDSRLSRGSLQYLVQWKGFGPEECSWEKDSDVHAPRLVKAFHDQFPQKPRPSGPVAPRGGGG
>Gypsy1_OS_pol#LTR/Gypsy 3895-7497 [Oryza sativa]
MSKEANLEWLQKRVQEYRSTKNDIGETVEDFDEVEKLGQGFTSADPLEEVDIGDGTKPRPTFVNKNMRADYKVKIIELLK
EYVDCFAWEYHEMPGLSRELVEHRLPIKPGFRPYKQPPRRFNPLLYDRVKEEIDRLLKAGFIRPCRYAEWVSSIVPVEKK
GSGKIRVCIDFRDLNKATPKDEYPMPIADMMINDASGHKVISFLDGNAGYNQIFMAEEDMYKTAFRCPGFVGLFEWVVMT
FGLKNAGATYQRAMNLIFHDLLGIILEIYIDDIVVKSDGMEGHIADLRLAFERMRRYGLKMNPLKCAFGVSAGKFLGFMV
HERGVEIDPKKIEKIRDFKAPTCKKEVQKLLGKVNYLRRFISNLAGKIDAFVPILRLKKEADFTWGAKQQEAFEELKRYL
STPPVVRAPKAGKPFRLYIASEDKVIGAVLTQEEDGKEYIITYLSRRLLDAETRYVFIERLCLCLYYACTKLRHYLLSST
CIVTCQADVIKHMLQRPILSGRIGKWAYALIEYDLAYEPLKSMKGQIVCDFIVDHHIDIAYEGEVCLVEVIPWKIYFDGS
SCKEGQGIGVVLFSPNGMCYEASVRLEYYCTNNQAEYNALLFGLQVMEMVGAKYVEAFGDSELVVQQVAGVYKCLDGSLN
RYLDSCLDIIANFDNFAIRHIARRDNSRANDLAQQASGYNVKKGLFLILEEPVLDFKSLCEIGKIGDQGRSDRHCTAGLT
GDQGRSDRPHAAGLTGDPERSDRPCVAGLTGSGQNAGGHVSINLEAELIVNSDICAQDTEEDWRIPLIQYLKDPTLKVDR
KIRRQAFKYTLLDGDLYRRNIDGVLLKCLDEDQSKVAMGEVHEGICGTHQSAHKMNWLLRRAGFYWPKMIDDCFKYYRGC
EACQRFGNVQLAPAAVLNPIIKPWPFRGWALDFIGQIYPSSSKGHRFVLVATDYFTKWAEAVPLKNMTHTEVIDFILKHI
IHRFGIPQTLTTDQGASFMSKEVKSFTESYGIKLLSSSPYYAQANGQAESSNKTLLKLVNKKIEEHPKRWHEVLSEALWA
HRISKHGATKVTPFELVYGQEAVLPVEVNLGSLRYIKQDDLSSEDYKTLMGDNLDEVIDKRLKALEEIEKEKKRVAKAYN
KRVKAKLFQVGDLVWKTILPLGTRSKEFGKWSPSWEGPYRVCGIVRGNAYFLETLQGERFQRAINGKYLKKYFPSVWQDA
>Gypsy-4_AF_gag#LTR/Gypsy 1067-2275 (N term incomplete) via tfasty with Gypsy-25_DR, 1 stopcodon. [Aspergillus fumigatus]
MSAQQSSSNRTSVNPSPSVQDLINLIQANQQTLNRQLDANQEAMARRFEQFEASVNERIDAANVNQRHEQPQQSQQQHLP
PPNGPQLNNPPASNLLLPTMTNGHWKTEELGYFWPDMPEDASIKQYNTSLFYKNVNVFTDRVKDVINYKGEPLVKANLQA
SLRGAALDWFTNELTELEKRSLRALLLDQGWLPELVKRFRPRAADALVKLQSLSYGYNDVRNDRTPRAFAQDVIRHARAA
QVNDIFNQITMVxTRLEPYLRRDIPEPTPTTTLTQFLEQLESRSGIWKDIANGYQKDRNKGTQPYGKPKHQQSQRTQGKS
PQERQADQPRTDRPYYPSNGYGYGRSYYPQYQYQPRLNASPFAQRMQQYQYGQQPPASNQNPSYQSPAQPQATAQPQGNW
RTN
>Gypsy-3_DVir_env#LTR/Gypsy 4860-6287  [Drosophila virilis]
MSMTTARVTDYSHADYIPIMDGDILLWDSYGYLRHTTNLTDYRTMTEETMKLTGMFPQSHMRKLLEIDTGHVLDMLSALD
VHHRKVRSLDFLGTALKVVAGTPDANDFRKTELTQMQLVTASNRQISINSRMQEKINQLTDTVNRIIKSSKEKQADTGHL
FETLSTRNRMIITEIGNLMLTLTLEKINVINPTIIDHSDLMNILTDQITGTPITDILKVSNIKVERKDNVISLIIEFPII
SKQCRKITIFPVAHNGSVLQLHDNLVADCDGQMLAVANCSQTATATFCKRSKSISCAQGLHAGGTAHCQTQPSHLAPVTI
VDDGIIVINDRSAILTYDDCTAMKIDGTNLVTFSSYATVNGTRYFNRKSVQNRFPAVAASPLLNISGHDSILSLPYIHRL
SENNLNYIKEVRDSIAVGNTLAISFGIMLLACAVGAGVYWLHRLTIKRRNSRKISKILENLNATEDGRSSRGGVVN
>Gypsy-4_AF_pol#LTR/Gypsy 2315-6880 via tfasty with TCN1_pol, 2 stopcodons. [Aspergillus fumigatus]
MWNHNGRQSWNQGPSRVGPPRERAYAANVHVEPTVEHPSPSPRYDEPEYSPYVESNERYESNEPYDQHDQPDDEDPGYQA
FLDHPAFERGDFPESKDEPCAFAVDVGPVVTTCNGCGATFPSRNRLHTHLSEYPRTQEPIPVTPTTNDPTAVRIIESTHK
PTGLVGIRSWRCATAKIGINSTSEYHEICLDTGCSSTIGNTEFIEALPSVTITELTDGITVSGIGSRHRSNRSAMLTLWF
PGLMNDGGSANAFAKITIRCHLVDGLKPKLLIGTDVICGEGFMLNFERGIATIGSCSRLTFPIIAQAKPRRITRAVVYAK
QRSLLPAYSVSKLAVRLKTDLPANRDFIFDPLDGSTLNGATIYAHMVDHVFSFIEVRNETPTPITVTRHARIGTISEADF
VTAYQVSEDAIPLAKLLESEPLEFESTKLSHPSSRYREHVERQLERAYQLTAEPESPLTVSPDHDNQTVLPNGITVYGKG
PETDRLAEVLISFNVxGDDGSTARIPEEEWMEVPLKEGWENRLPKPHVYRVSPKDRECIDRTFDPLREAGKLSPATGHTP
SAYPVFVVWKTVTNQNSQTKEKGRVVIDLRGVNKEVVPDLYPIPIQEDIINMVRGCRYITVINACRFFYQWPVKRSHRNR
LAVVSHRGQEIFNVAIMGFINSVPYVQRQMDRLLNDLEFARTYVDDIIIASMTFDEHLNHLSTVLQRLQDIGIRLEPTKA
FVGFPSVQLLGQRVDALGLSTPEEKLAAIRTLEFPRNLKQLEHYLGLTGCFRHYIDKYAHIIKPLQERKTRMLKGSPLKG
PERRAFATGKAINAPTDCETEAFRQLQSAFDSPLFRAHFDPLRRLYADLDASYEGFGVMAYHIQIDDHHTNLSIPPARTV
IQPILFLSRTLTSAESRYWLTELEVSCLVWALRKLRYMIESSRQPTVVYTDHASTVGISTQTSMNTVALEWLNLRLIRAS
QYIQQFRLQVFHRPGKSNIVADALSRLTTKQNKNIKYNEPDLDSIDAYFTDHGYTASSIQLSTQLKKRIIEGYCDDPRTT
RIIEVLCNNRTSDLPTVLPYQLDDDGLLYMTKHRLIGEGITEEPWIYIPRPLAKDMFRLIHDERNHQGIDKCLASLDGFT
LYQGRRMLRQYIKHCPVCLQNKIRHHKPYGSLQPLQVPPAPFEIITMDFIVGLPDDNGYDQLLVVVDKFSKRVGLIPGKS
TWTAQEWGSSVLRYFQEHDWGMPCFFISDCDSIFMSKFWKGYFTALKARWLYSAAFHPQTDGQTERVIQVIEVMLRHSYT
TAERPDLFRWTMDLPSIISTINGSPNESTKATPHRLLFGIDLRQPWQLLKQFVKQDFSVxLDAEESMKYASIRMKEIYDR
NHKPIEFRVGDQVYVRLHRGYSLPTKRANRKLQLQNAGPFRVLERVGRLAYRIELPSTWKIHPVLSVAHLEPAPATPDPF
HRELPKPPAVVDAEVYPGEDDIYEVERLLDKRTVQRGRKRTPYVEYLVRWKGYGPEDDQWVRKDDLQGSLELIEAFERNR
PM
>Gypsy-4_BG_pol#LTR/Gypsy 1853-5942 via tfasty with Gypsy-31_BG_pol, 1 frameshift and 1 stopcodon. [Blumeria graminis]
GKRGILDKEALLGYLVNIQEVDLGKLFSGKTYTLQCSLSFNYQVVDGISVLPDTGANGFAYIDSECATAVAKWLGQTPIN
LGYSIQSKGFDGKKGPIISQYILLSLWIDKRCLDNIPFLIVELGTHDIILGSRWLAHYNVMIDSRQRKLVWPLNHQLTPS
FSSPIRIHLNILLQNNPTVQNEHQKDIDRRDKLLKEQDKNFHFGANSKKRSVHLKKKIHRNSCSAPHSNELSSEANKNLD
NYNRSIETPDNDGKSHLVHIKNELPTETTTHHNTANTYVSTNTCKLMGMDICEISAPAFHLNLIPADSILFSISLHEIEQ
ELANVEQSVNLDDFQRDLNETIKKIPSDYHDLIDVFSKSASDKLPPHRTYDHNIVLEDQAQLKSGPLYPMSADQLKAVHK
YLLENLHKGFIEPSQAPFSSPVLFVKKSDGSLRFCIDFRKLNALPRKDRYPLPLIDETLSRLNKAKIYSKLDIRQAFHRI
RMHPDSEELTTFRTRYGSYKCKVLPFGLTNGPATYQRYMNDILLDYLDVFCTAYLDDILIYSENKSDHVEHVRKVLVRLH
QAGLQADVRKCKFNVTKTQYLGFIISTEGLMVDPEKISVVKGWLPPKTVKGVQSFLGFCNFYRRFIANFGHIVKPLVNLT
KKGLFFDFDLACHKAFEKLKTALTSAPLLSHYDPERTSRLETDASDGVVAAVLSQKNEDNVWHPIAFFSKTMQPAELNYE
VHDKEMLAIIRGLANWRAELQGSPHKVEILTDHRALEYFMTSKDLTARQARWAEVLSQFFFQIISRPGHQNASADALSRR
EQDLNIQDSIKREIRYKPLLQDQNLSNEIIKDxNLCYLESFKVIDAVIAANKTHNSLKDLRQQVNKNTNLSIDDGIIFFK
SQLVVPLVDNIRTELIREVHDQLSNAHAGRNKTYQELKSRYFWNGMRKEVEQYCRNCHLCRVNHAARDKTPGLLHPLPVP
DRPWQHICVDYMDMPRDKKGFDKVVVFIDRLSKVSVTLPCKKDVTARDTADLYFTYVYRYYDLPDSIVSDRGAQFISAFW
KFVMELLGVELRLSTAYSPQTDGQTEIMNQYITHRLRPFIHYYQDNWSDLLPAMDNAQLTLPHDSIGMSPFQLSRGYTPR
KSYDWKTPQNPKNAREILALEDAKAFASKLQETWKVGQEIMHRSQAKMIAQANKNRREPDFDIGDRVYLSTKNLRLQQPN
TKLAPKFIGPFKIISKKGYSFKLNTPKQWSNHNVFHARFLRKAADDPLPGQILPQPTPINIAGDDEWEVDKILDVKLIRK
ELQYCAKWLGWDDDPQYYPASNFKTAPQKIMEYHLQYPQKPGPPKHLMLWLDSWKNGFDDYNELDDNYPMTPSLRTSFFR
REG
>Gypsy-4_BG_gag#LTR/Gypsy 306-1868 via tfasty with Gypsy-9_BG_gag, 1 stopcodon. [Blumeria graminis]
MSDIYKSPETRLPPQPAFDSEHEHSDVNPGEDEIPTRAEVPHVAFRKKKSRISEVDQRLEELTMAHNEVGKKMSDAIVET
AYNQLSSYHDLEIINRHQQEEIELLKTKMKQLEKLIESVNLNSSSTDLNYNHRSSRTQPRYPSRVRQRCEDIEELEEEEC
QENFAPQFKKGKLPNRNMPSEYGHRGPSAERYRTNTPETQHKRMSRLxSSEEPDFQGPPFAKYQDSKESVGQTYGNVILG
EPDRKIDPIREFGGSCDLKFFENWLILLRGKIKDNEGHWGSDNRIMNFIFASTKDDAQELLAPYFTGEDEENDFVNSVQM
VNHLISTYRSSTLQRDSMVKFETLRQGSAESFQDFKTRFISLAGKAKIHHSMRKDLLYEKMNRQLKQAVYTQLHLLPDFN
SLCQHAEPVDKERIRLEKSIVNTRQEKLNSRKLYDPNSSAIYSVNQPSPRKELNKELSEFRGVICHNCKKAGHTKLECPR
YNSKISPPTVQVVAVEESGSEVESEGNLPDLNELYEGKEES
>Gypsy-3_DGri_gag#LTR/Gypsy 203-1138  [Drosophila grimshawi]
MLEAQLNQALGQIRQVPIFNGETDELGAFIGRIDFIMELFPSVDARQKLIMYSAIQMQLEGDAMRTSLRHLPGDWGALRS
VLISTFKTQTPCEELLRRVYNTYFGGSIRKFLEELEQKSFVILNKLVIENNAENKTLYSNALKNTVRDVIHKRLPDRLYM
QLARYDISTTDKLKAVAQELGLYEDRIPEKPKSANNTHYNKNNNKYYPKTQSNYNPNYNQSFRNQQNYNTNYRNQNSQNE
PMVNKQLYNEYQQKLNQGRMQNPINYQSDCNNTRPPNQPTKRQRPSNSGQSKMEWAENFHQTASETNTEPHS
>Gypsy-2_LG_env#LTR/Gypsy 5233-6612 Misses a chunk (near AA 100) [Lottia gigantea]
MKTVLTMLVVCIVILPTTDSILTYKNTLFRPVNRIATSRSRWLLTLVHDIRPYLDFLxNLSNDIGRALWTVDSIIASYYT
QDNSSAEYGLTKSxDSTKYALITDNESKQCTNPHMNFCQIKSPIFPINLSKLCVMALFSKNEIKASSRCDVSVKPNEILP
TSVYFTNGYWAVVVRERTRFSIVCRDTHLEHSSIVVKPPVQIIHLKPTCKAVNDHVTLPSHNTNKSTYFDNTSFKHLLTN
FNESITDIWKPITDHFGNYTLTKLPPKLKGTETIPIEKLVSELDDLHPIENLKKQTWPLWVWVTLCVVSAVGILILYIVV
KLYMKPLMLKFKSPWRRSDRKGENSGKVPTDQSTEAIPMVTMNQPSAPDDERLYPDIPRATTLHSLLNLAQQQRAIQKAE
TNI
>Gypsy-2_DWil_gag#LTR/Gypsy 837-2674 via tfasty with Gypsy4_Dpse_gag, 1 frameshift. [Drosophila willistoni]
MSVRHSSEDLAAIQDDNTLCLICDKPIQYRAQLRSTTCGHHFHIACFNIRVGSREICPTCDQPLQSMEGDGAEALSGGPQ
TSHQARVQTRSAAQRANLLAEMAQRDVSQERRLDESVEPAESVRNSDVNLARLIANAMATAASRQNERLEIQAVRQTELL
TQALENGFQRLYSVVATHQANAEESTQQAANLRSQVSATAASEQASNSNSILELRPDRISQVISSWKLRFNGKSGISVDE
FIYRAEAMTHQALEGNFVVLSRYVSNLFEGNASEWFWRYHKKVSHIKWLDLCRALREQFKDERTDQHIKAAISKRRQGDK
ESFDEFYEAIVALADKLSTPLPEIELLEHLRANLLPDIQHELLYESIASVSKLRQLVRTRETFMQTVRKPLGVPPRPMPR
RMVNAVSIQTEEESEAEDDVPVVEAVNLVCWNCDTAGHPYQECVAERRVFCYGCGKPNTYKPSCTHCNDHSTKHGRSCTS
EKCTQTDDLEGQQYRLEETQGLEEYLPEFTHIPDEKSQEISKYSETEPVESPRLGIYWSKTRSRERRKVFNKGVKKERKL
IASAVVGNVFDIRPYAEVKLFNRLVSGLMDTGASISCVGGSFAEELLAVKTEY
>Gypsy-2_PD#LTR/Gypsy 371-3553 via tfasty with Gypsy4-PTR, 7 frameshifts and 4 stopcodons. [Phoenix dactylifera]
MLKQDLRDIELDELRRQLEQLQQENQRLRQRQEQRERRHRQGSNHYSDREPFDDESERSNEEVEDFNPFYNRKASSSSEE
DTRHQRERRPHRNHRDFGIKIDIPDFEGCLQPDEFVDWLHTVERVFELNEVSDDRRVKLVAIKLKKYASIWWKNLKRRRE
HEGRGKIRTWDKMHRELKHKFLLEDYHQNKYFKLHNLRQRDMTVEEYTMEFEQLLMTCDIKEPEEQTIARYLGGLKPEIE
QVVQLQPYWMLNDVIRLATKVEKQQLRTSNSRFPRYRDGASNRGSSMSKTSASSKASTSQPSQKKDKGILSNPSHSNTVA
SNPRKCFKCQGFGHIAADCPNRKLISLVEEESCAEEEEEDQPVKWDEEGPSEEELVHADQGEALVVRRSLNTTVVADEED
WLRHNIFHTKCTSHGKVCNVIIDGGSCENVVATLMVDKLKLPTKDHPCLYKLQWLRKGNEVKVTKHCLVQFSIGKRYQDE
AWCNVIPMDAYHILLGRPWQYDRRAIHDGFKNTYTFEKDGMKIILVPLKMDHRPKPPLETSAFASKSELLKACKDATIAY
ALIVLEENEESTKLPRAIKPLLEEFADVVPDEIPAGLPPMRDIQHCIDLVPGAVIPNKPAYCMSPKEHEELQRQVKELME
KGLVQESVSSCAVPALLVPKKDGSWRMCIDSRAVNKITIKYRFSIPRLDDLLDQLHGSVIFSKIDLRSGYHQIRLRPGDE
WKTTFKTxDGLYEWMVMPFGLSNAPSTFMRLMNQVFRPFIGRFVVVYFDDILVYSKGKEEHLTHLxQVFQTLREQKLFAN
LKKCQFLIDKLVFLGFVVSSQGIEVDPSKVDAITSWPTPKMLHEVRSFYGLASFYQRFIKNFSSIAAPMTKCMKGDQFRW
TDKAQRSFEELKKRITEATVLALPNFDLVFKVDCDASSVSIGAILSQEGVPIAFFNEKLNDTKLKYSTYDKEFYAIALDH
WSYYLLHKEFILYSNHEVLKHLNFQHKLSRRHAVWSEFLQPFPFLLKHKLGTQNRVADALSRxHALLSTMxLKVVRFEVV
KKLYEKDPDFGKIWKLSAEGS
>Gypsy-3_DAn_gag#LTR/Gypsy 776-2311  [Drosophila ananassae]
MGLDRSPEKMASGESSKPVCSICKAEIETAAESSRTTCNHEFHRRCIESHFQKSRLCPVCKYQCGPSGSKAPDARETRSR
SRMQQSEPTRSLAASDPYISANAEGMYTRVGRNPRTLLSTSSSRPVEADMIVNDLTLLEVERRLSVMLSERLEDCVGACL
QKLLGTPNGSSSNDAGTAQANEGERQRRNSEIATDNRDLLTLENTSFNRNRTGPTVASPRSQHSRVSELEQRPDKVAQIL
NSWRIKYSGTGVTVDNFIYRVEALTHQTLEGNFGILCRYANVLFEGKANEFYWRFHKSVGVVRWDRLCEALRMQFRQGRD
DGDIEELIRNRKQKPNESFDSFFDSISVLTDQLEQPWGTAKLVRVLKNNLRPEIRHEILNVEVSSVSDLREICRRRESFL
EDVRRTHGYGKSNPFKRDVSEIIPGDEGKPTESDDEEAVEAFTLVCWNCQEEGHRYQECVEERRIFCYGCGAADTYKPSC
LKCSKNFKGSTAKPKYRPKTSSARPHQSKMTE
>Gypsy-3_CP#LTR/Gypsy 35-4533 via tfasty with Gypsy14-PTR, 1 frameshift and 1 stopcodon. [Carica papaya]
MVKTRSGYKETGEPFSILNIHRRPSRRTTSFESVIMAQDSIVVDLAKQIASLSEQMAKVMSWMEDQSHDDSDKNSTETIK
SPRSEFKDQSPQEEEEERLPRPFKVEAKIDIPSYDGSIDAEKLDSWINQLETYFTLYRYSSEDKVSLARLKMTSHALAWW
NSYIQTHEGEEITWDNFLDLIRKEFYPMGYQEDRWRRxHNLRQKRDQSVQEYTIEMFMKYTSGLLPRISTEISLYKPNDV
SSASTIAMTIEKKNSRNEQSFEGSRSSSSKQKKFKKATSALSSSSSTSSARRYCDHCKIDGHTKEKCWKLHPELHPKKRP
KGKTVATTTCDNEPIVVDQVQRAYPNLSLMATPKVMDSESLTKHDEREELFVLKIQVKQEVITAVVDNGSQRNLISEQLV
QKLGLSTIPHPKPYPLGWIHKDVGLQVNRQCTFRFAVTSQFIDEVTCDVVPLDICQVILGSPYLWDRDAIYYRRAQRIQF
TKEGRKYLFSGEKMKQTVDLITACQAKRMINSSKKFVLLFIRPSKDEGRTEAINIVNPTHVAIAKPSQNKEKNEITKLCG
EFLDLFSEERGLPPKREVEHEIQLISDSSLPNLSMYRYSVVENEEIKKQVSDLLESGVIKPSNSPCGSPVVLVPKKDGGW
RMCIDYRALNKITVKNRYPLPRIDDLLDQLKHAYYFTKLDLKSGYHQVRIREEDSWKTAFKTRQGLFEWLVMPFGLCNAP
ATFMRLMNDVLRPFIDQFVIVYLDDILIYSRTWEEHLDHLRKVFELLQKYELRLNKKKCEFGQRSLLYLGFVVGNGELQI
DPGKVKAIKEWPRPTNVTEVRSFMGACQYVRKFIQNFSMIAASLHELTKANRRFEWTQKHEDTFQLLKRKICEAPVLVLP
NLQKPFELEADASGYAMGVVLMQEGRVIAYYSELFQGSQKNYPTYDKELFALHQAVKHWRVYLLGKETVVYTDHRPLQYL
QTQSKLQQARHMKWMTYLQQFNLVIKYKKGVQNKLADMLSRPPITTLCLSAVMEIQPSVHEEYVNMYDHDPDFCDIMTMV
KMEKPSEFTLRDGLLYKGSQLCVPRKANRIQWMREAHTSKVAGHFGVNKTVQNLQRYVYWPRMQQDVTRFVKACVLCSTS
KPSNRKIGLYTPLPVPSRPWKSISMDFMGGLPTTKRGYDYLYVVVDRFSKMIILIPCKKTITGEETTKLFFRNVWTHFGL
PSSIVSDRDSRFLGSFWRSLWSMMDTKLNRSTTFHPQTDGQTEVVNRTIVHLLRGYNARHPKSWDESLPYLQFAFNRAIH
SSTNKSPFEVCLGYLPQSPFDIEFTLESSSKEVQDKNGPEKAQKFLECIRRVHGEVEKQLQKAQQKYKARHDRHRVKGEF
QVGDLVWLHLGKERLKGEGKKLKPIRYGPFKILKKIGDNACQLELPSYMEIYSVVNVENLKPFEPSMLDDEPGEVMPSVE
DLHTNNETPLLEDTILERKVTKTHRGTREAFRVGKKGQKPSASKWFTREMGESTFPNLKF
>Gypsy-4_HM_gag#LTR/Gypsy 17-754  [Hydra magnipapillata]
MSSMAKMIGKFDGSGDVVVWLKKVKLVGELQKMGDLSLIIPLFLEGDAFALYEQLSENEKASAVDIEKALLDAFAVDLFE
AYELFRDRRWNEGESVDIYMASLRQLMQLAKVENEELLQRAFITGLPGEISKQLQSQVKIFGINLNDVLNHARVLLSKVT
KEECLSTTISGSHKNNNRKSASRFNCYNCGKPGHVARSCFAKKETVTEGIQCFRCGKTGHIARFCSLKQGNASGKPPAPA
VSLDN
>Gypsy-10_BG#LTR/Gypsy 328-4643 via tfasty with Gypsy-40_BG, 1 frameshift. [Blumeria graminis]
MTNSASIGVGSPCNKDLKSAEPLRSKWRSVEQIEKLRADNKCFRCEKSGCYAKVCPLLPWRGPRYRKDVPRPDKPLLGPN
NRPLRAKWKTSEQIERLRNESRCFQCELPKCSTKYCLLLPAINPKFKIITSSEKRDVHDTRYIKNCDNSGSGRKQSLELP
ILKEKVPDVATVAGHEAKMNTSPFLVNALVNDVTMVQALIDNGCLCSGIIDEALAAQLSLPREPIPPRALQTAENSSEDK
PIVRSITWVSIDLDGYVTERLLLYVVPHSTHQMILGKKWLEDQDAVIHSKEQRLELRKSGGSVYSARRWRKKLKAVKEPK
AAAVEALSCLEDGVPVCKASLDDINKALRTKPCLTVSEARNRLPHPVKKFARLFADDSGADDLPPTRDHLDHAINIRHEN
GKPVQPPWGPLYSMSREELLVLRKTLTELLGKGWIRPSNSPAASPVLFARKPNGRLRFCVDYRGLNAITLPDRYPLPLFK
ETLRQLSKAKWFTKLDVKSAFHRIRVRKGDEWMTAFRCRHGLFEWLVTPFGLSNAPATFQRYINEQLRGHLDVNATAYMD
DVLVYTDGSEDDHWRTVQIILGKLEKAGLYLDIDKCDFLCREVKYLGYIVRAGDSVTVDPAKVKSIIEWEAPTSVKGVRS
FLGFANFYRCFVNGFSEITAPLTRLTKKDSVWRWGPEENKAFERLKKIFSTEPVLAQWDPERDTVMEADCSGYALGGCLS
QADKQGRLRPIAYYSRRLSGAEANYPIHDKEMLAIITCLQEWKAELRSVAKPFTILSDHKNLDYFMTKRLLNERQARYYD
VLQQFNFTLKWRPGNSCERPDALSRRDQDKPHGLDDERTMGRIIQLLPTVKASPVDAQLGISSESTPYQGPHSGRSNGST
SPAIDPAASARISDDEEIQALWNQGVNHDGDWIRARNAVQRGERSFPPDIAQKLTANIAECTVAADSVLRGRENRIWVPD
YEPLRTAIMQRTHDSYLAGHPGKDTMIGILLRRWFWPKMRESVRRFIRNCDVCGRTTVWREAKAGFIRSLPIPDRIGSKL
TIDFITNMPPSQGCTNIMVITDRLSKDIFLFGTNTMEAATCAKVFIDRYYRYFGFPRYLTSDRGSDWVGIFWRTFCQLTG
ITQRLTTAYHPQSNASERANQELYKYLRAFTCYSQDNWMELLPVAQLALNSRPSSAIGGLSPFFLRHGYDLEPLAEPTPT
SEDSSRHPGGLSAQDYVKRLRDAQDFAQAAMASSQQRNEGNANRFRRQPDQFKVGDKVWLDLRNVKTPQLSKKLAWLHAK
YDVTAVPDPLTVELNVPGNIHNRFHVELVKRAGADPFPSQRQDDAQNPAILDNLGEQEYEVDSIIRARTVRRGRGNFRQA
LVKWTGWAEPTWEPIEYLSETEALRIFEETYGPITTNNGPSESNSGRYVGQAEPHVQRARRERLQEKKKKKKGNRNFSP
>Gypsy-9_ST#LTR/Gypsy 44-5499 via tfasty with Gypsy24-PTR, 1 frameshift and 4 stopcodons. [Solanum tuberosum]
MANEVRDIKEMLDRITMELANFSVRQNQIEEQHEKSFAELKEALDAVKKNDTGKNHEETEGAGEIYTPSGQPMAWVSASQ
TGGAPTMVTPGGYQLGMGPLPQFQSPLGRSIQHTHVMGGGPAGHMGAGSSTHFQMHTGGQTQMPYGGFQSHPTMGIPGGG
RAQPPAHGHFFNSMSRLSKIEFPRFNGVDLRSWIYKVDQYFSLDEIPPNQNVRVASLHFDGLAIEWHLAYIKSKQHHLVS
EHFLELCGYTKMANEIRDIKEMLDRMTMELANFSVRQNQIEEQHEKSFAELKEALDAVKKNDKGKNHEETEGAGEIYTPS
GQPMAWVSASQTGGAPTMVTPGGYQLGMGPSPQFQSPLGGSMHHTPVMGGGPAGHMGAGSSTHFQMHTGSQTQMPYGGFQ
SHPTMGIPGGGGAQPPAHGHYFNSMSRLSKIEFPRFNGVDLRTWIYKVDQFFSLDEIPPNQKVRVASLHFDGLAIExHLA
YIRSRQHLPYPTWDEYMFALMDRFGTEFEDPMAELKLVKQTGSVKDYQNEFDKIMTRLTILPEYAISGFITGLKPEIGYT
VKNHKPFSLPQAYQLARNTEAQVNAxLKVARPSSFVGGSQYRGSSYNSSLKGTGSKRDFGQGKREVSLNLNRNTNRRLTS
AEMNERRQKGLCFFCEEKFFHGHKCGGSKSLYLMEVEEEEETSEEEVVDTPVPELGKEEEPGEVCEISVYALHGIPTFHT
LRVEGYCxQRPLYILIDPGSSHNFMDEGLARELQGNIQAVRTHAINVADGHDRQTKKLCKAFSWMMEKLTYTDDFLLIPL
RSCDMILGVQWLLPLGDIKLNFQELTLGYTYQGHECVLKGHVDKVRTVEAKRLEKMANGGAQLFMIRVVPLEEKGNLGVT
TPKEIVFLTREYPQLFAEPKGLPPSRGPFDHKIPLEVGSNPVNLRPYRYSYLQKDVIEKLIRDMLEQGIVQPSCSPYASP
VVLVGKKNGSWRLCVDYRDLNKVTIKDKFPISIIEELLEELGGSKIYSKIDLRAGYHHIRMANEDIVKTAFRTHEGHYEY
LVMPFGLSNAPSSFQSLMNHVFREHLRKFILVFFDDILVFSQNLSEHLVHLKTTFDLLMKHTLCVRQAKCSFGASRVEYL
GHVISVDGVSTDTKKIVAVKKWPKPKNVKELRGFLGLAGYYRRFIKHYGIISKPLTDLLKKDGFQWSEMATQAMEELMEA
LTSAPVLALPNNCVVFIVETDACDYGIGVVLMQEGHPIAYLSKGLSVRHQGLSVYDKELLALVLAVTKWAQYLMGKKFIV
RTDQKALKFLLDQKLHTGSQMKWIAKLMQFHFEIEYKKGRENKAGDSLSRVPTGEVASMMLINGVSELFEKIKNSWERDP
LTKAILAKVVSQEEGHKEFTFVNEQLRRKGKLVVGDEPTLKKEILLIxHEKPVGGHSGIENTYKRISNLFYWKGPKEDVT
MFVRQCATCRSNYDSAAYPGLLQPLQIPSVAWGSISMDFIDGLPRSKGKTTILVVVDRLTKYGHFLTISHPYTATSVAQL
YLDQVYKLHGMPENIISDRDPIFMSKVWQELFAMQEVTLSTSTVYHPQTDGQTEVLNRTLETYLRCFCADSQKDWASYLS
LAEWWYNTTFHSAIQTTPFEALYGQPPPLHIPYVPGDSTEEEVDRNLITREFKVELLKFHIARAQQRMVYMANQHRTDRQ
FEEGDWVYLKIQPYRQLTISNQTFSKLSAKYYGPYQILQRIGPVAYKLSLPPQVAVHHTFHVSQLKPCLSLPTNFNHLPT
VDVSSPNCVQPQEILERRMIKRGNKAIPQILIHWEQMSRDDATWEDYSTMKLRFPQFLS
>Gypsy-11_AA#LTR/Gypsy 162-4298  [Aedes aegypti]
MATADAKMNPSISSAGVQAGTPKTLNFGVFENYVAGDDFEVYEERMTQHFLLHDVPEERKVAFLLTHLGMDTYAILKKLL
QPVNPSTKRYEELVLTLKRHFRPEVNKVSERYRFHQADQKAGQSVTEYVVELKALVEKCEYGEFLKEALRDRFVFGIFDG
RLRTHLLKQKDVSFDKAVEEALTWELAEKDNKVREGNFSAHVVRSNKPWRARSKSRSRFHDDKKMQPRRNKLCDKCGREH
EPGKCPAKNWKCYSCGKQGHAASMCYAKVSKQNRSSSQEPRKIQTVGTVGSGDELALELANLRMQLNSLQDKSFLLERSG
VMVETLFVEGQPVDFEVDSGACATVISSSLYRKQFSHLQLFGVRNDFSTVTGEGLKIIGGISAQVSKDRSGPSKKLVLVV
IESEKSFRPLLGRTWMDVLWPSWRSSLKQGNVSINSFDRSIFDSIRVKYPNTVSDVNSPIRDFEAEIVIESNVTPIFHAA
YSPPFQQRPAIEAELNRLCDENILKRVQHSRWASPIVVVPKANGKLRLCIDCKVTINPFLRSEHYPLPRIDDLFAKLANC
KVFCVIDLRGAYQQLRVSENSQQXLTINTHVGLFQYLRLPFGVASAPSIFQSIMDQILGDIEGCGCYLDDALIGAESLEK
CKQILDVVLARLNHYNVKINLDKSRFFASSVDYLGHTVSGDGLKPNKSKVDAIVNAPAPKNVTELQSYLGLLNYYAKFIP
NISSELRVLYRLLRKDERFVWTQECEDSFAKSKQLILNNNVLQLYDPRKPIVVAADASPYGVGAVLSHIVDGEEKPVLFA
SCTLSPAEKNYSQLHREGLAIIFAVKRFHKYIYGHKFKLISDCEALKEIYHPRKGTSIVATSRLQRWAVILSMYEYXFEY
RPNRCLANADALSRLPVPGSTEIEELSINRLESCPDLPLKTRDVADFTAKDQVLSQVYGFVMRGWPRSVPEXLKYYYNLR
NSLNSQDGCLFYGDRVVIPKLLQSIVLKMLHANHDGIVRGKMLGRSLFWWKNMQGDIENYFKNCEICDQRRNVPTEKVTS
KWPKTSCPMDRIHIDFFAFEGKTFLILVDSFSKFIEAKLMSSTNADQVNEKLEDFFKFFGLPKEIVSDNGPPFNSFDFVN
HWETRNVKVTKSPVYHPQSNGTAERGVQTVKNFLKKRLLDQQLNSKNLSRKLNEILAWYNSTPTTVTSLSPSELILRYRP
RTVLTGINPKANSSVEQSNRNTRQVRFDESKNETIVYDAGNRKIATDKEIPEKQFKKGERVMYRNHLKEVVRWIPVVVID
KIGKFLYKIKFIENGNIRIVHVNQLRHKNSFIESNLTKLPEKFVDQSRCKRRRSDSGNGIHAPTPKYLKRRSESMSDELM
LRRSARESRPPVRFGFDEL
>Gypsy-13_BG_gag#LTR/Gypsy 185-1252 [Blumeria graminis]
MSQINTNNKTAEVPKPIIQWPKWSGDSADFPAFHISLEGVAEEHTNNKSFCYSVFSQSLPAEAQRRVAPWMRAQKKSNDW
SSEKFISHLEDLFVDRDAATRAQTKINALRQGPRQTFANFRSVFEQLCSEADHLAPVGASKVNAMKCALASHLRQGIAYR
QGVSETNYDSFVREVQSLAKELESIPSFREIRGSDKESFLVERTSQATLTSIDRNKDICQPNQSSSRISQPATLFDKDGD
IQMADKSSLQSQIDAQTQVILAVLKGTSSKVSGGNSRTNDERPFPPEVSKAERNQRIDNNRCERCGKSPSHRWGDCRYRN
FRENPTPRGYSSTRRAGVNSMSKAPSKGEFISDSEN
>Gypsy-11_AMi#LTR/Gypsy 100-5402 via tfasty with Gypsy-41_AMi, 1 frameshift. [Crocodylidae]
MSNADQSAIPSRSDGTVQGGAGQPAGTEATPEWVRVFQQILREVTHSSSDQAAYKRLRSFSGTLPVPAGEEGFDSWLSHI
QETLLTWQIPDEDKRRRLLEVLREPAFGVVRTAKLRNPAITTQQCVQVLQDAFGQPTGSGGAYYELLGTFQRKGETLSAY
VLRLEPVLQRLVTQGALSVTDADQIRLRQIRIGARYSSDLLRNLNLAGSRSSPPDFSHLLREIREEEEISRLRETMWVPE
DVSPRRGPMGRVLTVAPHEDTLLGVEEEPVAPALAAAVARTLPRGQPSPRHRASGGPRPHTRSRAPGFCYRCGEPGHMAR
ECTQPENPGLVFERLKGPVGSGKRGRGRAMESAPLRTQTDSRTLPSVNSLPKGLVGPRAEVPVTVNGRPCRAILDSGSQV
TILFESFYEEHLRHLPLLPLTGLGLCGLSQEQYPYRGYVNVRLKFPAEIAGVEEEVSTIALVCPDPGWMKGATLIVGTNS
SLFQVLARYCKRQAGPGYQQRLTMHALCSEAYDRWEHREMWGHPEVVGTLHFSGAKPQRVPAQGQWALPTVCNWIERDEK
NKLLVVETPTGRERPGALRVPDGVIETKGLNQDPVTVIVVNPTLKDIVVHPGQKVALIKEAEVVSPEQEGNPPPIDPSRF
FFGNSPVPEACKARLRDKLGARARVFSLHDWDVGEAKGVEHHIRLSNPRPFRERSRRIPLAEMGEVRRHLQELMDHRIIT
ESKSPYASPIVIVRKKNGQLRMCIDYRTLNARTITDQYTVPRVQEALDCLVGSKWFSVLDLRSGYYQIPLREEDKEKTAF
ICPLGFYQFERMPQGISGAPATFQRLMEKVVGDMHMTQVLVYLDDIIVFGKTLEEHEERLLRVLDRLETAGLKLAIDKCK
FCQASVKYVGHIVSQEGVSTDPEKVSAVTTWPRPKNFRELKRFLGFAGFYRRFVKDYATITGPLNALTRGHQGGRSPRKK
GRDNGLNGLPVTRSPTEPFGPRWDSRCEDAFQEVIRRLTQAPVLAYADPNRPFILHTDASLSGLGAVLYQEHDGHRRPVA
FASRGLSPSETRYPVHKLEFLALKWAVTEKFRDYLYGTTFQVWTDNNPLTYVLTSAKLDATGQRWIAALANYTFSLHYRA
GRKNVDADALSRQLPSNPGSVWSPETVKTICDLQLQDPVGTRESTVCMAEVLGLPPEGIPQAWVQYTTLTPSSLPQVTAT
EWRTAQEQDPDVREVLRARRSGNTRPATLNNATPAAHLLLREWERLRLFDGVLHREVQDPEGRKYWQLVLPQKYKALALR
ALHDDFGHMGVERTLALARERFFWPKMAEDVRTKCSNCDRCVRRKTLPARTAYLHTIQSSKPMELVCMDFLAIEGEGHRK
GNVLVVTDHFTRYAQAFPTRDQTARTVAKVLWEKYFSVFGLPARIHSDQGRDFESRLLREVLTVAGIQKSRTTPYHPQGD
PQPERFNRTLLNMLGTLQQEQKAAWSQHIAYLVHAYNSTRNDATGVSPYLLMFGREPRLPIDLCFGVERVYQQHLTHGQY
AQQLRDRLRRAYRLAAETAGRNQQRHKRLYDARVREQGLQEGDRVLLRNLGLTGRHKIADRWRAEPYTVVRQLGDLPVYE
ISPESGPGRSRVVHRNLLLPIGELVGPPPPERELREERPRSPRRRRPHATQPAVVPAAPPEDSDSDWWYPTDFHPSLGPA
TPQGEGEMGTAARGAPPGETEGENIPTPLPASGADSSSEREPESPGPSRSPAPDRTPRPRRELRPVRRFTYDAPGVPGEV
PIAAPWVQ
>Gypsy-9_CR#LTR/Gypsy 48-8459  [Chlamydomonas reinhardtii]
MDDDDAPSSRRPRTSGYTPASSAGATQGIDYERIAAHCERFDPSTHSVRDWLDNVEELAEEFGWDEARKLHLAAKRLAPT
AKEWYRAWKLANPMASSTWEGFCDALRERWGVSDRELHSQLANCSQRRGETVREYSDRYLSLVTQLRIDYNRDPTHMHNF
MRGLEPDIYDEVYIMEPHNLTAAIRKAVYASEKGRSAPHRTGSGNGRGDGGSESDTRGRSDSRDGRRVRFDTRSPSVGPR
YGTKFDSERRYDRDTRDRRPDQHTPNRAGTGGGGSAGNGNNRPGGSGASDVDRLSSRMARMQLLHRLDPSVNLYQSLLAR
AGPGRYHDHVQAADSDEDSDDGGAMSEEDYFSSSSSGGSTRHYPPSLRTPSYRGYDYTAPEKAASAYTKRVGDFEATTLP
RKRVPVPVPGPTPMETDRSPARRFTAGHGEQRRERELAREREQAREREGPAPRPTQAAAAAASTSAAMPRGGPGRANPSA
PATARPTTPGRRPRGDKPPAASAAAPRPRTAAAGGTAAQAATPRPRTDPIPAIESGDEERKVADEICSKINAYPISLGRA
LRISPAGIYSKLGGRMLGIARHVGGAQDARPAAAAATPNLNGSGRGGPTAGATARVNNCRSQDPPAFKAPVVTTADDWDV
VETEVLLGRADGRFMPIPAVVDTGASNTVVPRITLKRLSRQGDVVRSDVPFTNADGVRAPSCGLVRGLLISLGDMVCSVD
AYVTEATNYGILLGSDFLAPIRADISYSRGLLEYTNDLGHRSARRIQFSRLSGPAAHLAHKRPAPTEQPMREAEEPEAPT
RQPPLAGGNGRVQPLSPFAVHQQQIAPPELSNLSATASLARAERYDQMLEALQQERTTRVRIPAPQSGRRVLMMDLDSVP
TAPADNPVVPPAEPMNIEEEWQRLLEGQPPGPPPPSTTVSVEEQRWHDLMSAASDAHERPRSQPPTPRRTPSAVTGHHNP
QSFETPGRQAREARLPPDYSPTNSLPSPDLPPEALPLLHELAAGRGSIDKVERVARILKWTASHELEVLEAAAFLAGQRD
LQLPGCDDEENEEWWHNLDAYSLEGTDISDDDEGTGDYLTQAPQALTLRRSPSVDDLMEADPSQAETPSLISASNSDIPR
DPFSFPAWAKAWENPATATERGEGLIEPDGTTNQRGAANPIAGLPTSTRAGARSPDQYVCKATLHPQPRRDGTDSDDDGP
SLRYESWDKSGSEDEETAFCFFAGTIGRPSRSPSLAVPDRGTDPVATITQARPTRDQVLGMTPDQHLTAARAYGARLREA
RGPIRPDDERRQMLLGSIDPTLPPDAQALLAKTLLDNYDLFAVSNQDLSVTDWLEATIDTGDAAPVCTNPYRLSKGERDA
LEAEVQKMLATGVIQHSSSEWCSPMVMVKKRPAGSDKAGGGATDAPPAPPQWRACIDLRAVNELTKPLRYPMPHVQTLID
TIGPPMGEKRIYSTMDLIAGFWQVPVRSEDRCKLAFQAPSGLYEFNVLPMGARQSPALFQRLLSMVLRPLLWYGPGETTG
RKCCALFIDDICVASPDALAHAQHLQDTFDCLRLANLKMAVKKCHFATSKVDFLGHTIDQFGTYTLAARNADAIRNYPKL
KTVRQIKAFLGLANYYRSMVPNFAVISRPLYDCLGKAGYRWELEQQEAFDRLKLALTTEPVLRAADVTRPFRLATDFSCN
AVGACLSQVDDEGREYAVSYASKRLVGAETRWSSTDGEAYAAVWAVKKYHEYLACGRFELITDNSALTYITKAKDLTGKL
ARYALRLQGYDMIIVHRPGTRHGNVDGLSRLGHLEEDEEATGPTDHPPQQQDTAVDSPADGKLHLVGLAMAPQRARRLGG
SLSTFLHGRTLSQEFDRVWSAQTPRGGARAFLALRAPPLAAEGSPVVTAAPAAETAALAGDGGSAAAAKAPHSDATTKAA
AHDNAAGLRIRPATAAGFQQALAARAQQASPLLSPGKRGRVGAASTAATASASLRTPSGAPQRRRRLPCAPQHLQDYTEK
GGSDSEGTSPKCGRCQQGKPEWNMLLCDFPGCEQAFHTTCLQPPLRRVPEGDWFCPQHQQQRAPNQGGGAGGGQGKGGLT
PNHPPAAEGGGSGAMLSGAANVGGGPATTAADPLSPRRKLKIVRRHLPAAAVTTGRAAARDIHEGELPPTAAAGTAAADL
QAGPGSWTATADPPEMELPASTQAHDLSCRTFVGAQEGAAGETKPSATTARAPPPELVAAAVARDSSDEDPEWEPGSGSV
SEAEVSEDIIAVDGVPRYSTRESAIWADTGLLHYLQHRSFMERPDLTWNEFYKECARIISKARRYRWANGQLFRSGTRNR
PEVRVLRLSERQQALAEVHGLAHPGARGTFDLCRSRFWWEGMGHDCKVYVEHCSQCHPAQHVLLRNLPLRPLPIMQVHHR
VNVDLSGPHVITPRGNQYIIVAIDAFSKYPLVGALPNKESATTARWFWEHVVCHWGSVAVVMTDQGTEWQGQFAELLGRE
RIRHVRTGARCPQQNGQVERFMGVMRSALVRLCQTGEETEWDTHLPQVALSYRAARQRSTGCSPALLLYGRELTLGQQKP
PLDQQAAEPGEDVDSADEGEQEVAEARRQAANARRSILDGAAAAARANMESAQERMKRDYANRTFKNAPPKPHTAAAAAP
PTDAIAVAGDTDSDRTVTPTRSPRRPTTTEAHTGDVALGGGAVEHARGARGSNPGGRGQDRSSGRGRGRRGQGGSAPPAS
ASPERSHESIPDDDPALSHLPSLAKDALVYRVTKGRTKLQRDTEGPYKWKMWNRTGTLALVEDQQGRQFSVPTAQLLVHR
GAAR
>Gypsy-5_ST#LTR/Gypsy 27-4200 via tfasty with GYLES1, 2 frameshifts and 3 stopcodons. [Solanum tuberosum]
MTSKSQRNKEGEQEVQRDTTRKHDKSRVREASSNPPVCGRSLGEEGEVFDTSQLDEKILGVEAGLSALNRRLVVFENNFS
SLETVALEGLDEVKSNLEELEKVNKEGLTNLELKLTESLSSLHREFETLKRQVDETAGAGVAGPITVRETRIEAPKPKEF
RGERNAQDVENFLRQMDAYFEHVNMTSEAAKIRTVAMYLSDTSMLWWRRKKADMERGVCTIDDWEQFKGELDGADRGKNV
VVGMFNHMALFNHMMLAALAAQPASVRPRESLFVNAKLNGKDVRIMVDTGATHIFVTKERAKDLCLNYVASDTMLKTVNA
LPTTVHGFALKVPIDLGGWKGLTDFTIAPMDVFDIILGLDFWYEVNAFISPRLNQLHISDAGGSCVVPLIRVPQNGMHLS
AMQIVKVFKRGEPTFLAALVGGVGDLIEAVVLPPCIEQVLVDNRDVMPEELPQRLPPRREVDHQIELVPGAKTPAMTPYR
MAPRELEELRKQLKELLDAGHIRPSKAPFGAPILFQKKKEWTLRLCIDYRAFNKVTVKNKYPIPLIADLFDRLGQDKVFT
KMDLRKGYYQVQIAEGDELKTTCVTRYGVFEWLVMPFDLTNAPATFCTLINKLFHPFLDQFVVIYLDDIVVYSDSIGENV
EHLCKVFKVLRDNDLCVKREKCSFAQPTIQFLRHTISHGEIRMDSNKVEAILDWEAPTKVPELRSFLGLTNYYRRFIFGY
SAIAAPLTDLLKKSREWEWTDLFQSSFEKLKAAIIDEPALALPDFTKAFKIHTDASDFAIGGVFMQEGHPIAFESRKLND
AERHYSAHEREMTAVVHYLRTWRHYVLGAHFVVKTDNVATTYFQSQKKLTAKQARWKDFLAEFDFTFEYKPGKANVVADA
LSRKVALAAIISSTCSSIIDDMKEGMQHGPVAKQLLFLAQQGKMKKFWEENGLLYTMGRRVYVPKWASLWRTLIKEGHDT
MWAGHPGQKRTLALLESSYYWPRMQDDIEVYVRTCLVCQQDKVKMKAPGGLLEPLPIAEKPWDSVTMDFITCLSNSEGFG
TIMVVVNRFSKYATFTATTASCKAKEAARIFLRDIVKHWGIPKHIISDRDLRFTGTFWREFFILLGSELHFSTSFHPQTN
GQTERINALLECYLRHYVSANQKDWAKLLDTTQFSYNLQRSEATGRSPFELATGQQPNTPQSLPVDAGLKSPGAYHMEKA
WEEQVDLAxSYLDKAARKMKKFADRKRRPVDYRIGDxVMIKLNLRQFKSLRSVSQSLIRRYEGPFEIVAKAGKISFRVDM
PHHLKIHPVFHASQLKLYFKDVEDKDRGQTGRAQIFITPPAVDKQIEAIIDHQLVRGKGWNNSSSQFLVHWKGTASEEAT
xEKYENLWQFRDKVHSYSQVCGTGVVAKSGGG
>Gypsy-5_DEl_gag#LTR/Gypsy 563-1816  [Drosophila elegans]
MGKNWIYLLKKEDFPKVAAKLGIILEGKSDDMRKALSEYVTKTQNDPGMAEIWAELEELYDKPGSSGKLQVPDAEQLIAS
LGVESMKEAGRSRGPSQERRTEQQRPSAPDYAKVAKQVREWSFKFDGTEKPLEFLEQVEWSANTYGLNLNLIPRAMPELL
QGKALKWFISNNKHWRTWGEFSDSFQTYFLPRGFFSKLADQVKQRKQGFRESFKDYMVDMQTMMRPLGYSPKETLEQIKE
NCTPDLRISLRTYKIDDLESLMVLADEYEELEKEREAFIQENKFSRSKATAPQQVTCRRCEEEGGHQAPIDGPSQWTPNT
YNHQSTLWRPPDTNQRPPSAAPRAHRSQTHIVNPHEACRRCGGHGHWARGCQNQRLLFCWTCGKVGVRSVECCQRSGNGP
RSQPQRGEQGSQGVVSPN
>Gypsy-6_AA_gag#LTR/Gypsy 1138-3063 [Aedes aegypti]
MDLLKVNMNSKFPYAGHLTNDEIDYELKLRNYTEDVEKELNFKQRLLRRLFNEDEQENRDYRTSLTIDQEFEFVAGRVNM
IRGCLAKSFDIKYLSRLKHYHMRVQRCIADDVEAKKMKELLLGNIATLLSSQNALQSKMQANPKDLLGETDSDQHYSEKS
EGAKSLLCQLPFLLPAMEQSELTQGKESGHTDQDMRNLGAYRKSENKMTQEKIQDKNENSTSRTNNSPQSEIATPEQNRS
DEVIGLQAKMDQLELQVSRLTSLLMASIPNLQQQPERGYSNSCELPANRYNQTNQDNQRTRRFEGLSNINLEPHNMGSPR
NNVRQNGNRIRFENNSSEDETPVDYPHPRERAIHREDRVQYDRKMEKWNLFFTGDSRSTSLEDFIFKVKVLASMNSIPNA
KLLSNIHLLLRGEASNWFFTYYQPSWTWDIFETRIRFRFGNPNQDQGNRQRIYDRKQQKGETFIAFVTEIERMNKLLTKP
LSNTRKFEIIWENMRQHYRSKLACFSVSNLDQLIQANYRIDASDPTLHPVGPKLSVHNIEGEEVEESEDEEVNAIDRRQN
RGQNQGLNRNGQNPRRENQEATRVPMCWNCQQQGHFWRNCREMKTTFCYVCGNPGKISSTCDKHPRRSSQNQAVESPSSS
GN
>Gypsy-8_AA_pol#LTR/Gypsy 2871-6095  [Aedes aegypti]
MSNFKYFSQNYNINTCFRRCPHLSVKILDEEIQGLADTGAGVSIISSVDLIKKLGLPINKCNVKIKTADSTEYSCLGYVN
VPFTYNSKTRVIPTIIVPEVSKILILGVDFLEAFNFRLMIPQEHSQNDSEGVESVEECSLFEIMWVENYFGDDDRTICFQ
IEPETEVVPIPTEMDESLDMPTIEVLKNPYENPADIDTEHQLSDVEKQELFEAVHKLPATTDGKLGRTHLLEHTIELLPG
STPRKMATYRWSPVVEKVIDDEVDRMLRLGVIEECTGPVDFLNPILPVKKSNGKWRICLDSRRLNSCTKRDDFPFPNMLG
ILQRIQRSTYFSVIDLSESYYQVGLEKASTEKTAFRTNKGLYKFVVMPFGLTNAPATMARLMRKVLGSDLEPFVYVYLDD
IIITSRSFEHHCQLIRIVAQRLKQAGLTINIQKSKFCQRQIRYLGYVLSEDGLSMDASKIQPIVDYAQPKTVKDIRRLLG
LAGFYQKFIRNYSEITTPITNLLKKGRKQFIWTEEAEVAFRKLKEALISAPILANPDFDVPFIIETDSSDIAIGAVLVQI
QRGERRTIAYFSKKLSSTQRRYSATERECLAVLLSIENFKHFVEGSKFIIQTDAMSLTFLRTMSIESKSPRIARWALKLA
KYDLTLQYKKGTENIPADCLSRGVQALDVLGLDPYVDGLKSQIERFPDKFKDFKIVEGKVYKFVTNSTTPEDPVFRWKYV
VPLCERQKVVRDIHGEAHLGYFKTLCKVKERFYWPRMSSFIKRFCHTCEVCRESKTPNLNVRPPCGKPKECSRPWEVISL
DFLGPYPRSKHGNVWVLVVSDFFSKFVLTQCMRNATAPAVCLFLETMVFTLFGAPSVLISDNAQVFKSSSFLKLLEKYQV
THWLLPVYHPAPNPTERVNRVIVTAIRCALNKQLSHKNWDESIPNIAMAIRTSVHESTGFSPYFINFGRHMVSNGSEYDH
LRKLGPDKEPDPTKMSEEMKKLYEVVRLNLHRAYERYSRPYNLRSNARHQFNKGDMVYRKNMHLSDKSKDYVGKFGNKFS
KARVKERIGTNTYVLEDLLGQRIPGTYHGSFLQKA
>Gypsy-7_SMo#LTR/Gypsy 25-4374 [Selaginella moellendorffii]
MADQAERWNPIVDGGADDGADEAAEIWTIQDVVHELRALNRNQQEMQDEMHGMMDTMRGRVEALEAGRGSAPSKPSLVDR
LKIPTFSGDGGVDECLAWLANVKKFLAARGTPDAEALVAIPMVLRDAGLRWWNWLEESRVADKKPPVSTMDEFEAAFRLR
FAPHYDVENARTELRHFQQGKMTLGDYIEKLTRLISRVPTKDPDQNKSYFIDGLHSESMRQHLRHSQPTKSLEELFDAAR
RLDNDKHKSRKRSRSPSVENRRDDRRGHKDGNKHHKLKSVVTTSDAKGSKKQKFFVKNYRQGCHHCGELGHYKADCPQLK
NKQQDKKNGQSSSHGKSDTKKLQTLQREDDENDHSGRRKRLSIVARQLNCVWNKMELEDTRESALMLEGVFRGDPVRILL
DSGSDDNFVSAKFVAEHGLVTRGVLPYTVEGAATSAQHFDACVEGLEVLVGKTTLVETFYLADIHRVDLILGMPWLVKVD
PEIKWSIKRISLEYGGVKDVWFGEGVQPPVVMLSATSLKRACRNGKALSSYLLFVRDLGDQGTCGGEAAVRDVLDEFSDV
FPSELPHGLPPLRGVEHGITLEPGTRPIYRRPFRLSYAEEQEVQRQVKELLEFGFIQPSKSPFGAPVLLVKKKDGSMRMC
IDYRALNKKTVKDKMPMPRVDDILDKLGEARVFTKIDLRSGYHQIAMDDASISKTAFNTSFGHFEFTVMPFGLTNAPATF
TRLMTEVFGRYLHEFVEIFLDDILVFSKNMEEHKVHLRKVLLLLRDSKLYAKKSKCEFAKSEVEYLGHIVTSKGVKTDPR
KVAVVENWPTPTTVAELRSFLGMASYYRRFQHKFAEVAIPLTRLLRKNVPFEWKKPQEESFVALKRLLSETPVLRIADPS
KPYEVTCDASGYALGGVLMQEGQPIAYESRTLNSAEQRYSTYEQELLSIVHALRTWRHYLYGAVFVVLTDHKPLVYLFTQ
KELNTRQARWMVKLMEFGEFPIEHRPGKSNVVADALSRVRHVTTLQTRFCHHLSKVVSEFGQLVEHAQAQDAEVASLRDQ
MEAPFSLVDGILYYNGRVYLPRVDALITQVLFHYHDRLEAGHFGGKKTYELIKRNFYWRNMKADILKYCKSCELCQRVKV
PREKPGGLLQPLPIPQSRWCSISMDFITCLPRTQRQKEQVWVIVDRLTKYVRLLALRKTVTASDLATVYLEKVFPDFGLP
EDIISDRDSKFTSGFWKSFAKAMQVTLKLSSGDHPQTDGQTERVNQVVEDMLRCSIGQRQGQWDLYLPLVQFAYNNSQHS
GTKLSPYFAMFGRHPRTAVELGLHLSKDVQDKLDSEATDLATELDEILVVCKRNLQAAQDRAEKFANEHRQFREYKVGDL
VFVRVIFPSSERRNTLVPLRTGKSDKLSHRYAGPYEVLERIGKAAYRVRLPAGVKIHPVFYVSQLKGVLSRSDGPNASLM
YTAVEDGPGA
>Gypsy65_DR_pol#LTR/Gypsy 1364-5758 [Danio rerio]
VTDCGKRCTSIAKSRAVRGGTDGSKTGTLTKEQFLERAVGKCPEVEIHAGGVAIRCLLDTGSNVSTLTESFFKEHLHGED
KDMHCTSKWLKITAANGLPLPYQGYIELDIQVMGLTLPGCGFLVIRDQKEGEIDSAPPGILGMNIAQRCKQLILAEFDNA
LKGNLDAEWRAALNKVQEAAAVEANSLVRVASTHKLYIPAASVATVQARTPKILPESKDLCLFEPGQSSLPGGLVLIPTL
VSPAKRVFPIQVVNLSPEGAWLPPKVKLGVLGHGGHVESSSCEVRFHQISVDHEEVMVNQRSMKGVSGDLQCPLERVQIG
GTQAQQAELKSLLRRYLDVFAVTEEDLGYTELVKHEIPLNDEFPVSQSYRRIPPNQFQEVKDHIAGLLKKRIIQESSSSF
ASPVVLVRKTDGSLRLCVDYRKLNCKTRRDAFPLPRIDESLDALGRAQVFSSIDLASGYHQVAVHEKDRHKTAFITPFGL
YEYQRMPFGLCNAPATFQRLMQTIMSDLVFQMVLVYLDDLLVYSSTFEEHLVRLETVLQRLREAGLKIKVDKCHFLQSEV
RFLGQVVSAQGVSTDPEKVSAVNQWPVPNTLKELRSFLGFCSYYRRFIEGFSRVAGPLHDIVNTCVHQKSVAQANKLFKD
SWTMECQQAFEKLKEKLTCAPTLGYADFTIPFVLETDASNLGLGAVLYQQQRGHKTVIAYASRRLRGAERNDRNYSSMKL
ELLALKWAVVEKFRSYLLGSKFTVLTDNNPLCHLNTAKLGAVEQRWAAQLAIFDFEVQYRPGRSNTAADALSRRPGMEGM
EVVTEDSEYDGCVAVCSELRVGTLVEASIAEQVAGSREEGTGQLQEAMEDEHFLENTPTLPGYTKDELCQFQKADPVISL
FRHFWNQKRKPTKNERVSLSRSVLALLKQWDRIQEKDGLLYRIIDDVFNGECQQLLLPACLVERVLQSVHDNMGHQGVER
TLGLLRQRCYWVGMYNAVDQWVKKCQRCVLSKMPQPKIKAPWTPFLASHPLEVVAMDFTTLEPASDGRENVLVVTDVFTK
FSQAFPTRDQKADTTAKIILKEWFLKYGVPQRLHSDQGRNFESAVVAELCKLYGVRKSHTTPHHPQGNAQCERFNRTLHD
LLRSLPPDKKRRWPEYLPELVYAYNVTPHSSTGFSPHYMLFGTQPHLPVDALLGQEPMSEKEPAWLSVHKERLQEAHTRA
REYAEKKAADRVAKRHNELYCPEVAVGQHVYLRHRPLGRNKIQDAWAPTAYKVIEVHGTTYTVEPVGGGPARRVHRSDIR
PCPGPVPMPRRKIKSVEEVPTSIKGMPSLDAECVVVENTRLHESGSANPVREESVQSQLDLDPDSGAMDEMEEAQERSKD
RVINEVSAIEELSLPNPERTGSPIETVSARPVPVPRKPKTESTHVDAPCPSPRRTQRSTAGVHSNPNKLPKSVCNAVSLS
PDILSKVLAGILLYTSEKLQEVDD
>Gypsy61_AG#LTR/Gypsy 68-4540 [Anopheles genus]
MLNSDDPNSDQQPSRSSHESHRQSSVPDPSTAWIHEMFKQQQSILHQQQEAFMKQQESFLTRMMSSMNVREPNGPEFLVE
SLAKQVTEFRYDPEENVTFAAWYRRFEGLFEKDAAKLPDDTKVRLLLRKLGVAEHERYNSYILPQKASDFCFEETVVKLR
ALFGSKESCVSKRYKCYQMQKTSSEDYVTFSCRINKATEEAELAGLSIETQKCLIFVCGLKDEQDADVRMKLLSRMEEKK
DITLAQLAELCEKLTNLKRDTTLLAGESKVQMIGQEKCRSTKGKWQGSRKLHQRPEKQSRVQCFLCGEGHWARKCTFKHH
KCSKCFKFGHKEGFCNAASRWTNRMRQNRNVRSVTVNTVRSGRGCVRVVINGTPLEMMLDTGADITIISRRLWHHVGKPV
LKPSMVKARTASGDLLHILGEFAGSMIVAEQCMSCVIRVTTADLALFGKDAMDIFNLWDVPLTSVCNRVGLDEPCSEILQ
KEFPKLFSGKLGCCTKAKIQLELKEGATPVFRPKRPVAYAMFQAVDKELERLENDGIISKVDYSEWATPIVVVRKSNGTI
RVCGDYSTGLNDMLQPHQYPLPLPQDIFASLATCTIFSQIDLSDAFLQVEVEELCRKLLTVNTHRGLYAYNRLPPGVKTA
PGAFQQLMEVMLAGLGGVAVYLDDIVVGGPNEEAHMKNLRAVLKRIEEYGFTIRLDKCSFQKKQIKYLGHLLDSKGLRPD
PARIEAILNLQVPTDVTGVRSFLGAVNYYGKFVRNISMLRHPLDSLLKEGASFTWTKQCQDAFDQFKAILSSDLLLTHYD
PRQEIIVAADASSFALGATISHRFKDGSIKVVQHASRTLTKTEQKYSQPDREGLAIIFAVTKFHRLVYGRHFRLQTDHKP
LLRIFGSKTGIPVYTANRLQRYALTLLLYDFQLEYVPTDKFGNADVLSRLIAKHEKPEDDYVIASIEIEEDLRSVVNSVS
KALPLKFSDVERETKNDAQLRKVYEFTRNGWPHAAVRDRTLSNFHSRRESLSTFGDGLLFGERLIIPSSQRYKCLQQLHL
GHPGIERMKALARSYVYWPGLDSEIESLVKSCRQCAMAAKSPVSSLPICWMKANAPWQRVHVDYAGPIEGDYFLLAIDSF
SKWPEIIPTKTISSTATIRILRNIFARFGMPTVLVSDNGTQFTSADFAEFCNTNGVEHIRTAPFHPQSNGQAERFVDTFK
RALKKIREGGSSVSEALDTFLLTYRSTPSKLLEQKSPAELMFSRKIRTCLELLRPPQRLDPVSEGNPRKFKMNDLVYAKQ
YRRNSWRWVPGMISGRIGRVMYEVTIEQNRKIRSHVNQLQKRVDRNNTSKVAAQLDNTSNTSLPLNVLLDAWNMVEEVHY
PDAYQTTSQHVAETAKDCTSSSSSSCPTSSSSSSSSSSPSSSSSSSPSSSCPASPSSSSSPAPSSSSPAPSSSSPTSSSS
SLQRSAKAFLSPTSPGFETADSGTPSPVQPLRRSSRVRRSPLWMAAYKRI
>Gypsy68_DR#LTR/Gypsy 90-3987 via tfasty with Gypsy-24_NV, 1 frameshift. [Danio rerio]
MEGAFGLKPPANFDWNATNIPKAWKAWEEEFSLYIDLSLTDADDKTKVKVFQYLIGETGRELSKTLGAALPADGELTLEW
LITAFRNHCNPAPNETVERYKFFSRNQNSGEMIDKYITDLKGNFGSAKDSLIRDQIVCGILNSHVRERLLREPELTLEKC
VRICRASELSKENVMTIEGQKAEEVHTVQRIKQNQGAKQTHTKCKFCGKQHEWKKLSCPAYGKQCKKCGKLNHFAATCKT
KETKRKGIHSVTEIEEEPFQEILSLGSQMREDTQEKQLFATMLIGERPVKFQLDCGASCNVIPIQQLNPDTVMEKTEQIL
VMYNKSTLKPVGKCKIKIRNPRNRKLYRMEFIVVEDTSSVPLLGNKAVQAMDLVRIQHENIMAIDDIVTTERCRGKEPWD
KSDIHREYADVFEGDGCLEGEYNLEVDPAVKSVRLPKRRVPVALLKHLKDELGSLVERGIIAQVEKSTEWISSMVVVKKP
SGKLRICIDPRPLNKALRRQHFPLPTIDDVLPDLTKARVFTVCDVKDGFWHIRLSEESSYLTTFATPCGRYRWIRMPMGI
SPAPEVFQHRLTQALEGLPGIRIIADDILICGEGDNDEAAEKDHDTKLRQLLDRCRDRNIKLNFNKLKLRQKEVPYIGHR
LTSEGLKIDPEKVRAILEMPRPSDVKGLQRLLGMVNYLTHKDVIWEWTDVQEDAFNKLKQMIASAPVLKYYNPEDDLVLQ
CDSSETGLGAALLQAGQPVPYSSRALTATEKGYAQIEKECLAILFGMEKFHQYTYGRKVEVHSDHKPLETIVKKPLLNAP
KRLQRMLLRLQRYDINVVYVPGRLMHLADTLSRAYLPECAAEGSVETEIETINMLQYLPISEGILQKIQRETAKDEKFQM
LQQVIAQGWPEQKTQLKEEVRQFFSIREELSEQGGVIFRGEKALIPAKLRTEIMERIHASHLGIESCLRRARDCVYWPGM
SAAMREYIGKCAVCRTVDARQQKETLCAHDILIRPWAKVGTDLFSFNNRAYLITVDYFSNFWEIDYLTDTSSSTVIHKLK
AHFARHGIPDTAISDNGPQYSSQEFKKFSIAWEFRHVTSSPAYPQSNGKAESAVKTAKHLMEKAKRAKADPYLAILEHRN
TPSQGFNASPAQRLMSRRTKTLLPTRDSLLQPGVVNTEHAVEINQRKQAYYYNRGAKDLRPLQEGEQVRVQLDTKRKAHW
TPAKVERMTNNRSYTVKLENGTVVRRNRKHLRTVPGRPQRADTGNTVKLAQTNHPDEGHTKAVPETCITRTHHTDTSNSV
VITRSGRIVKRPTHLRDFV
>Gypsy75_DR_gag#LTR/Gypsy 278-1657 [Danio rerio]
MAFSLNADDFDETMTGLGLGRGRFFGETPVTPIGRESKINGKPQVLCSTRIADQVASPTADTVPLAVPDLNNPDWQGFIA
QIVQQVGQTMLTSQKEASSKGEENADTQSQSLGATKTTFTDIPSLNLTGVRLIMQSDAKEPPVYRGDSTDKLSVREWEEL
METYLRKRGTPLAEQHQEILSRLMGKAKDVVKVTLRCNSALKPIEDPKVIMNILKQHFGDVNYSCMPLADFYGTVPLAGE
NPIEYWVRLNKAVDLTEEALKRLGRQMQNPCQEAAMMFVKYCPDPTLSAVFRFKAPEKWTAQEIQEQLDRYQTDQREQMS
TKPKRHSVTRHVTACIQTPHKDAVSVVPSEEPGECDVSITRAAQSDDNCMRTLINLLDRALSQNAQTPSQPSQSKLCKVC
RSRDHSTVTHCRREHLCFTCYQPGHGKRECTNERFRPSQAPPRGSAGLNWMAHVVEGDA
>Gypsy72_AG#LTR/Gypsy 35-4060 [Anopheles genus]
MDIPASIEELMEQFTRVGLVKRCEALGLDTSGSKEELAGRIVEHSEGGNQDTTRVGDYLDAVEGSSTSSRESVDREARGV
SIHFKDVQDYLPTFSGKEDVCAWVIEFETSSKLFKWHDLHKLIYAKRVLQGAAKAFVRSIPEVSSWIDLKHALVEEFEEK
VSSATVHESLRRRKKKSDESCSEYIYAMCEIGKKGHVDEQSLCEYIVQGIDDDPMNKTCLIAAKTIKQLKSQMRTYEKLA
EQIREQRSKRQIPAKNPDSNKTKYAPPASMKCRSCGKTGHIVKDCPNKAAGPVCFACGKPGHRARECSERPHFSGNANLI
SSDKGGMITMKIGEKELNTLFDTGSQFNLLSEVAQNTVSCLNVTPTTMCFNGFGGKRTAALGKIETNVTIDQHIYQGIQF
YIVPASSMGYDAVIGRDALKDMEATVTQQGIKVRPIKNNAEESECVSEVLLCEPDKITVPPKFRETIASIVSEYEEARCE
GKSVQSPVKLTIVPNERIVPFRHTPGRLAYPEEKAVDDQVEEWLTKGIVRPSTSDFASRVVVVKKKDGSNRVCVDFRKLN
AMILKDGFPIPVIDEVLQKLQNAKWFSVMDLENGFFHVPIDEASKKYTAFVTKKGFYEFNRAPFGLCNSPAVFMRFVNHV
FLNLINEGVLEIYMDDLIVYAESEEECLLKTKRVLLTAAAYGLAVKWNKCKFMQSSVFFLGHYVENGTISPSPEKISAVT
KFSVPRNVKAVQAFLGLTGFFRKFVKNYAQIARPLTNLLRNDAVFVMGHEEMHAFNLLKEILASEPVLRLYERKAETEVH
TDASKEGYGAVLLQRFDGKLHPVAFWSKKTTDAEAKKHSYVLEAKAVYLAVKKFRHYLLGMRFKLVTDCIAFKQTLQKSE
VPREVLSWVVYLQDFTFDTEHRPGTRLKHVDCLSRYPVRVMIVNDDVTAKIGEAQKKDETIKAIREILASRPYESYKLKG
GLVFKTIDGIDLLVIPKVMEKEIISIEHNNGHFATQKTVHGLKQKYWIPHLEQKVKQVIDNCVRCIMYNKKLGNKEGYLH
PIEKGDRPLQTLHVDHVGPMDATGKQYKYILTVVDGFSKFVWLYPTKTTNAQETIRKLENWTAIFGSPERIVSDRGAAFT
SLVFADFIKENGIEHVVCTTGVPRGNGQAERVNRTVIAALAKLSAEDSTKWFKWVDQVQQALNSHFNASTKKTPFKVMFG
VEMRHIVTGELVKLIQEEMYERFEEERQEIRLEAKEAIGRAQLEYKKQYDKKRKPEPGYSVGDLVAIKRTQFVAGKKLAS
EFLGPYEITQVNRNGRFKVKKAAECEGPNITTTSADNMKLWTYTVNNEDLEAYDSDESSEI
>Gypsy60_DR_gag#LTR/Gypsy 224-1675 [Danio rerio]
HCFINFKIMGEKFVDRFNISSPISPFIPRGRGVITNSACKDGPTINRMGLSHVTSDYVQGVGRGLFVHDPTAQHSVGNTS
TTHNTSCDRQILDCLTDMFGRLGEQISDAVAAKIIENSTMSVNRESHVNRGVNSDSFTKQDVSRVTVHVTSDRDPVIFRG
DGSDKFPVHEWIEMTKTLLFKQKCAVENQADEIMSRLMGRAGDIVRISLRSDTSLNVKSDPEIIYSILLKYFSIAPSCLP
LADFYSTLPKVGESAVDYWIRVNKAADLADEGLRRQGRVMDDISAEVARMFVKYCPDPVLSDFFKHKPISEWTAKEVQGR
LDEYQREQRSSLTSASSLDMRNVDVLPCDNLLPMSRSQETNASFAHYTSSPPVSDGVQDRVHSTCCPERAVRQSHDQGGN
SNEHILNRMMGMLEQVVERVHQSSNVQPERNLIPRYRGRVRGCGVCGNTSHSTKSHCLRDRLCFSCFSPGHAQSACPQSQ
SGN
>Gypsy48_AG_gag#LTR/Gypsy 1381-2295 [Anopheles genus]
GIFCEPKMSKNESDDKNAGPSAIPVRAAGPSSVAGTMEQENSHLAIEKISTKLPCFWEDAPSAWFVAAEAEFDISNVTRE
RSKYSHVLSVLPKNVLPKIMDIITMPLPNNPYSHLKSQLLERLNASEEQRITQLLYHVQMGDRSPSDFYRHMVQLAGDSA
NLTSELIRKLWLSRLPKTMEVALIAIGNREINELIKIADRVWEATQAGAVSSIAGVSSSESSGRNPSNETAILRQEISEL
RSMLRRISFQTGNNRGRQRERSQSQKRARTPSQVRKHPMCYFHFRFGEQARRCQKPCNFSQQKN
>Gypsy45_DR#LTR/Gypsy 339-5096 [Danio rerio]
MEFDLTTFSLAPTIEAFNKCRKKDLFLIADFFNISVQRDVTKQTLKEELFGKLVEEGILPKDSDDSVEGQDEVVEQMSEM
DVNHDPVIAQEAEMAEQITDLGVNYDHVMTQDPVIALKLKELDLLIKKQECEAEMIKLRVVEKQADRDIQLGKLELEAKR
LALTPVPMPRSRPVSVSTPVTSANSTVTEDFSRVPSRESFDISKYIRLVPPFREAEVDSYFVAFERIASKLSWPKDMWAL
LLQCSLTGKAQEVCSSLSIENSLDYDVVKAAVLRAYELVPEAYRQKFRSHSKTVKQTYVEFVREKRVLFEKWCFSSKIST
LADLQELILLEEFKNCIPSNIAVHLNEQKVSSLSDAAVLADEFVLTHRNIFPNTTVKNSPVNVESSVVNRFTRAAKSEMS
PKMTPKPAGADKRVCFFCLDPNHLIADCRAWKQKNTTIKPKNVALVEKPHEGNSPVEESYRPFLFEGSVSLSPDSKFKTV
TILRDTGSVQSFIAADVLPFSAESFTGNDVLIRGIEMRCVNVPLHSVYLKSEVVSGPVNLAVREQLPVDGVGLILGNDLA
GGIVFPRPVVSHTPNFMQKPDLAEKFPSAFPACAITRAQSKRFEDVVDVSDSFMVKEPDSLECVLSVTPDPDPDEICLDD
TPTVPLEVSREHLAAAQKADPSLTKCVLAADGIKHAPDVGVVYFWENGLLMRKWKPHEEDLSWQEVQQIVLPSGYRQQVL
KLAHENVFSGHVGVTKTYNHIVKYFFWPGLKSEVAKFCKSCHTCQVDGKPNQKIPPAPLCPIPVITDPFERLIIDCVGPL
PKAKSGHQYILTIMCAATRFPEAVPLRTLKAKAVVRELIKFCTTFGLPRIVQSDQGTNFTSKIFKQTLKELGISHQTSSA
YHPESQGALERFHQTLKTMLRRYCTETGKDWVEGLPFLMFAVRESVQESLSFSPAELVFGHTLRGPLKLLSEQILNPRSN
PVPVDDYVSSIREKLQNAQAIAKRHLSVAQSKMKCHYDKKAVKRDFQPGDSVLVLLPTPGSILHSKFAGPYLIERKLNET
NFLVATPDRKCKSRVCHINRLKAYVDRHHLGKAQDKSAVLPVSTTATAVISSNFSLEEDDLVSKDVSASCTRLNNSVIMQ
DLQHFLSHLTAEQFKDITGLLHAFPDLFNDVPGRTAVCVHDIDVGDAVPVKQHPYRVNPRKREIMQAEVKYMLDHGLAEP
SQSPWSSPCLLVPKPDNTFRFCTDYRKVNNLTKPDSFPLPRMEDCVDRVGLAKYVTKLDLLKGYWQVPLSQRASEISAFV
TPDSFLQYKVLAFGMRNAPATFQRMMLQVLSDVTNCEVYLDDVVVYSDNWSDHVKTLEKVFKYLTSASLTLNLAKCEFAK
GVITYLGKQVGQGLVKPVDAKITAIIEFPVPCNKRELRRFLGMSGYYRSFCPNFSSLVSPLTDLLSTCKKFEWTNDCELA
FNGAKDLLCQAPVLSAPNFTKPFSLQVDASATGAGAVLLQEDEAGIDHPVSYFSKKFSKTQQNYSVIEKEALALLLALQH
FEVYLGNSPQSIIVYTDHNPLVFLSRMSGSNQRLLRWALTIQEYNLDIQHKRGSENVMADALSRV
>Gypsy50_DR#LTR/Gypsy 608-5407 [Danio rerio]
MSSSSIIEDFFAFPSEILLERCTKEELLQIAERFDIEVTSNDKKLKETLMKAVKSALCERGVLEVRAPIIPDESVSSPVC
SVDLNAKFSEMSLQEKQLCVDAEKFRAERDVCALKEKELENDFEVKKMQQQLEMRKMELELQKEREEREFQLRKLELELK
LKSHQAPVISAAESNVFDVHKNIRLVPPFLEREVEKYFQHFERVAESLKWPKTFWTLLLQCVLIGRAQDVYSALTTEQSS
DYEIVKSAILQAYELAPEAYRQKFRTHFKSEKSTFLEFAREKENLFDRWCSSVKIKSKEELRELILLEEFKCCVPNAVAM
YLNEHKVTKLSEAALMADEFTLTHQNTAHVNDMSRLKLNSMSKSKKMLSRQHVVSVPAENVSLTRQKGEIICFYCKKQGH
KISDCAILKKKDKSVKPVGLISKVNHNVSTKQIEKINISEMEDKTSVDFGPFITDGSVSLPDSDEFVPVRILRDTGAGQS
FLMQGLLPLSERTATGSHVLVRGLEMGYMEVPLHHIHLNSKLVTGDVVVGVRANLPIPGVTFILGNDLAGGNVWEKPDGE
IPPVVFPSVEGLNKPPDCSDLFPACAVTRAMTKRGVLDETGSVLSDTFISSTDSSLEPGTVNTTTVDEETPVHNITSVDA
HIEKPVSLSESPPCDANANTCLLSPLHSVTRAELIKAQHADEAVQEMFSLVGAGGENKVSTSYILRDGLLCRQQPMSSDS
SLDPRIQIVVPSIFRHDVLRLSHQGPAGHMGVRKTCDRILREFYWPRLKKDVTKYIRSCHNCQMTGKPNQRIPLAPLQPI
AVCTTPFEHLIIDCVGPLPRSKAGHAYLLTVMCQSTRYPTAYPLRSITTKSILKALTNFMSIFGIPKTIQSDQGSNFMSR
QFSKVLQQLKVKHNISSAYHPQSQGGLERFHQTLKSLLRSYCVELDCDWEDGLPWMLLAIREVVQESTGFSPNELVFGHT
VRGPIAVLADEWNITDPPENVLDYVSGFRYRLYEARAIALRKLGKSQEKMQRLFDRKVKLRSFQVGDKVLALLPVLSSPF
QARFSGPYTIVKCYTNNNYLLSTPDRRKKVQVCHVNLLKPYLSPVSSLSVHVVTSDLDSSVSGASVDMTTDLDEKSGPSR
GVVEGRLNNSEFLVNLSHHLSHLCEPEKTSIIELVNSFPSIFSDVPTQTHVIQHDIDVGMASPVKQHPYRVNPVKRKLLE
KEVEYLLAHRLAEPSFSSWSSPCILVTKSDQSYRFCTDYRKLNSLTKPDCFPLPRIDDCVDRVGSAQFVSKFDLLKGYWQ
VPLTSRAKELSAFITPDSFLQYTVMPFGVRNAPATFQRLVNRVLSGMQGCEAYLDDVVLYSSTWSEHLAQIRELFERLAK
ANLTVNLAKCEFGKATVTYLGKVVGRGCVRPITAKVEAISSFPTPTTRRELRRFLGMVGYYRGFCKNFADVVAPLTDLLS
PKRPFHWSVQCQCAFDNAKSLLANAPVLTAPNFEKPFLLAVDASAFGAGAVLLQEDDKGVEHPVSYFSKKFNCHQQVYST
VEKEALALVLAVQHFEVYLSSVCGPIVIYTDHNPLTFLDRMRGKNQRIMRWSLILQPFSLLIKHIRGKDNLIADALSRV
>Gypsy58_AG_gag#LTR/Gypsy 121-1398 [Anopheles genus]
MSTSENGASDFPMEGEQRRSSLLRSTGFATGQQIFPPANENVVPTVNLPSQNAAGQPSLQHFAASSSVPAQSPDSAMLMQ
MMQLMQQQMQQQQQQVQQQMQQQQQLITQVLQQSQVTNQQSQAFPTQVIAPSNPELIIDALSGSITEFRYEAESEITFDT
WFARYEDLFAQDASRLDDAAKVRLLVRKLGPAEHARYASFILPSVPREIPFDETVKKLKALFGRAETLVSKRYKCLQLTK
SRTEDFVSFVCRVNRSCVNFQLSAMSEEQFKCLILVCGLKDDADADVRTRLLSRIEERTDVTLEQLSAECERISSLKVDS
AMIATQAEEQILALRSRSNAQQQASKWKQRKQYQHTRNSDNVNKPPGPCWLCGEAHWASECSYALHKCRDCNVTGHREGF
CNQQKRGNKKGKYKKKNARRWTCVR
>Gypsy54_DR_gag#LTR/Gypsy 424-1653 [Danio rerio]
MLDCEGLPNSHVSNASMEQQGVFSSTPFPNSQPQNLVAAMSDIISQVGQQIADSIVTRLNQTHSVETHPVIDSPKHVTTD
NTSSQMLDLLQSQMSFSRNVKEPPSFRGKMSDTVDLNEWIDIVRDYIKRNNLRKEQQAEEIMVHLRGKARDVVKFGIRNS
DVNIVHNPDAIFSILRKHFEATPCSPLPLADFYTTLPGPDEGAYEYWLRLNRAVDVAADRLKEQGKVLDCPGTEVTRMFI
RHCPCKELAITFRSKTMDQWTVQEVHNILNEYHSETSLVAAVRNTASIKIPVNRTEVELPTAALPPTSNVQQSSSLEVSA
LERVMNLLEKVLLKEANSNEPSRRSKPNVSLPRIKGLNDLPCTVCLSPDHSGLTHCREKKLCFQCHSPDHSRLGCPERVK
SLSSHGPGN
>Gypsy76_DR_pol#LTR/Gypsy 980-4324 [Danio rerio]
VEGKLTIPGSKERAVSGVTQFVSPSNSSLLLPITLTFESKEHQLQALVDSGAAGNFMDQTLATNLKIPLKLLDNPLEVTA
LDRRPIAPGAVTHLTVPLHVSVFHHKEEISFYLIESPDLPLIFGYPWLTLHNPHIDWSNGEILHWGPLCHKVCLDPPSNN
PESQDPVDLSRVPPQYHSFHSVFSKQKASVLPPHRPYDCAIELMPGQCPPRGRVFSLSPPEQTAMETYIMEGLKAGIIRS
STSPAGAGFFFVGKKDGGLRPCIDYRALNKVTIRNRYPLPLMATAFELLQKATIFSKLDLRNAYHLVRIKQGDEWKTAFN
TPTGHYEYLVMPFGLTNAPAVFQALINDVLREMLNKFVFVYLDDILIFSSSLQEHESHVRKVLRRLQENHLFVKPEKCEF
HTTEVLFLGFIIKPGQVQMDPKKVQAVLDWPAPTSVKEVQRFIGFANFYRKFVQNFSSVVAPLTALTKVGSARISWNPEA
EAAFRELKRRFTSAPILTIPNPELPFVVEVDASDVGVGAVLSQRGKDNCLHPCAFLSHRLSSCERNYHVGDRELLAVKLA
LEEWRHWLEGAKHPFQVLTDHKNLEYIQQAKRLTPRQARWSLFFNRFDFVLSYRSGSKNLKPDALSRIYSNTPRERNPEA
IIPQSKILAPLRWGFESAIRKAQIQDPDPGGGPTNRLYVPKAVRSQVLQWAHSSRLTCHPGISRTLDFLQRRFWWPTAKK
DVISLVRACPVCNRGKTSHLPPQGLLHPLPIPHRPWSHLSMDFITGLPPSHGNTVILVIVDRFSKAARFIPLPKLPSAKE
TADLITSHVFRVFGIPQDIVSDRGPQFSSRFRRSFCQSLGASISLSSGFHPESNGQTERINQSLETTLRCMVGHNPSSWS
SYLLWAEYAHNTLRSSSTGLSPFECQFGFSPALFPEQEIQVAVPSVQQHINRCRRTWRVVRRKLIQTSNQYQRQANLRRR
SAPSLRVGQRVWLSTRNLPLRIESPKLNQRYIGPFKIIRRVNPVSYRLEIPRSFKINPTFHVSLLKPVLCSSFVPSDRSP
PPPRNIGGKPAYTVRRILDVRRVQRSRQYLVDWEGYGPEERSWIPAKDILDPKLIRDFQARSSGGLGGNVRSRS
>Gypsy-1_PI_gag#LTR/Gypsy 45-860 [Phytophthora infestans]
MPTNAQLQAEIDRLNQAMAERTRVPSNLPKFTGKRGEDVREWLFQVENACRINGIAIDDANPRIPGIAGSAMEKPASGWF
LHWASTTRVEEHTWGIFREHVLQHFEASNYQSVLRDKLQRLKQTADIETYNGEYSALIFRVEGMSVLDQVLFYANGLKPR
TRSYVKLENPETLSNAMDLAVKFEVTHFVEDASERKVRHEKTKTSNEQPQDNKKTFKGKPFRGKGRFKPSSNLKSKETRT
CHFCNKPGHIKANCFAWKKEQGKQGNEKPRQ
>Gypsy-1_HM_pol#LTR/Gypsy 736-3684  [Hydra magnipapillata]
GKLKWDEFALGIFTRTRPETRLPTIDLVINGRKATALVDTGCSQSIITKKLLPPDYKVIRVVNVATMGGIIRCEEVSAKI
CHPTNGCLVDVVVLSVNEVINKYDMIMGMDLIKTCDGLQIGTGKLKLCNSLIELSSKLRVATIEIGTSKAYFDGKKWIVS
WEWENEPKMKNRTSQYNVADQHCEAFNNEINEWIKEGILIKYDDKIMGKPKGLLPLMCVIQDNKKKIRPVLDYRELNTYV
KASTRDADVINDAMREWRLMSKNSNDSVVDLRRAYLQIHVHKRHWPYQTVIYKNQRYALTRLGFGLSLAPVMMSSILRYV
LQQDSALAKTTRGYIDDTLATNGNGRKLVIHMKKWGLHAKAPEYFGENPVRALGLEVTVNPLTKEMFWKRGRELPIIKSV
LTKRDIFSLCGNLIANLPVAGWLRPACSYIKRCTNEAGWDEPITNKYVIEMMQEVVDKVVKCDPAKGVWNVKPNASLTVW
CDASSLAKGVVITQGDRKIEDATWLRPKSDAMHINVAELDACIEGLNMALKWNPSDVSIKTDSHSVFSWLNSELTRDKPV
KCAGQCEMLIRRRLQIFEKLVEDYVINVTVTWVPTTKNIADELTRVPTKWIKNKVATQECNTIYKYDKQQIRKIHSLAHM
GVSKSMELCMRAGIHVTRDTVKQVVAECDECNSIDPNVMLWDKGNLAVSKVWERVACDVTHVDSSLYLTCIDCGPSRYTL
WTPLSDESATMVVQALETIWSTLGPSSEVLLDNSKSFRSQLMQTMAAKWEIRLIYRAVEKPSGNGIVERVHRTVKRTNAR
VKCGIPMSVFLINNVPSKHGTPFEIFCQHHKRVRIPGIDKIESTQKSMTECREWKVGDKVWVKPKHITPCTQRWLKGSIV
ALHNGLTAEVDVNGHTLPRHFSHLQHRRVDTKEEDTTDDYDSTLFKLPETSSKHIVNDDPNLQIIPPDNGKNDNSTGSDQ
NYSTDGETESQPVQFTRYGRRVLPNRKYNDYV
>Gypsy-1_PPl_gag#LTR/Gypsy 66-2372 [Postia placenta]
MSGTGQSPPQHGRNPSRQVIYSPMPRPHSKHAPRFKGTSLDDFLEDFEAIARNAGVLNTEWPRTLPRYCVQEVRDVIEHL
PEFQGSDWAIAKAALTELYQSNDKRRRVTADKLREFVADSAKTQSFRSRKDLDVYTRQFLAMSGELKRRNLITDNEINLR
FYKGLPREVKLRIRQDLKSTTASSAPAMADVLMLVRKLYSEDDIDAESDHEDYLDTDDEDDSEVSTDEERDDEPAKKKRK
DKEKSSNPRVKATPDSVVPGPSGKSQENVLDALTKQMEELRIQVAEQARQAQTRRICWICDTDSHRVGYRNCPEADKLVE
EGLLRYSQGKLVRIDGSDLPLVRPGTGGVANALRTERRAARGKERDPPPHQSMNVGVISDTGEDVLTGEVYAIAVPFSDD
EDAYSYPAARTPKKDVRFDPLAKKDDGKATGIKLKISGKGQPPSITVQHPERPPAQSTPPTVEKAPATKAPVAKRKPPAA
SVADDSDVGMQSSSSKAPKAKTPSYRFTSDVQESVNIEQVQKTILDTPITLPLRELLASSADLQKRFANLTKTRREYAAK
YGEYMEADSDQIEGARNAYLSLRWGEDAETIIGRYANSVSVRPTRLFAMTTGRFEAKIADTNLSAMIDTGSELNLISATA
FEHLNIPLDIDGARWSLRGISGEPVSLQGCARDVPIEIGGHRFGHHFFVTQVGGSIGKQDVILGQPWLQWYAAMIRYSRA
GPMTLTIYPKGDEGDGPAVSLKLVAPHHDRNVDRLVQSHERHDVQDFY
>Gypsy-2_DVir_gag#LTR/Gypsy 823-2217 via tfasty with Gypsy4_Dpse_gag, 1 stopcodon. [Drosophila virilis]
MMAVVRSQENLTLSEAPAVCTICNESSIGDADTVETPCAHKFHRNCLNQWLRSNETCPTCKRVCSRELYEDSSDLNAVAS
QRPTNTVPNYYTQPSKESLGLSEQRVQLLISKTLEAHKAEMASYLSEELNAAVRNLNLYQEPREEPQLEWENDFPRDAPR
SNNASRLPNASVQSDARREYAVDRPDKISSVISNWDVRFSGVASDIPVDDFIYRINxLTSQCLNGNFRLLYQFANLLFTG
PALTFFWRYHRTTDQTGWFNLCTCLRERYKDHRSDEDIKDMVRRRKQRGSESFDEFLDTMLALSDALREPMSDSELVINV
KRNLKPELRHELLHVNTPSLATLRKECHKHEAFYSNYLSKPISRPIIPQRVVNEVVHEDTTMTDLTQNLVETGDLYAIHS
PDKLICWNCEEKGHRYQECLKARRVFCYGCGAVDTYKPTCRKCNPVSENSPEDFRRLLNANVRRQ
>Gypsy-2_DAn_gag#LTR/Gypsy 2483-3781  [Drosophila ananassae]
MEEIKATLQKFDESLKTLLDQVVAVKEDIRKVGTRVATLEQDHERRNPAVIQPVPLVRPRTEYELKETSTLPDCVKELQT
FEGEPGKFVSWINRAQAVVNDYEIIIGKPLYRTIILYIRQKIRGDADLALSSYNVEDDDWSEIKRVLSLHYADKRDVRTL
EYQLSQLTQAGRTLDQFYNDVNNHFSLILNKLKQSEHAPNVASALIEMYRDKALDVFVRGLNGDASKLLIIRGPKNLPEA
YSFCLELQNVSVRGNARMEHTNKFTPFFQPRYPTNASRYAPPMAPRFPPSFQPPVRAPAGATFNDGSSGNSRGFNRFQGP
RPAIKMESNRSGQSYQSGFGMRRGNDSVYGSAPGPNPFKKAQRLYHMAAVPSSVVTMPETDTQNSACQATYVDEAVSAHD
SSLEYDAPYHKADNENVNDEANFMPDAYPACHT
>Gypsy-1_HM_gag#LTR/Gypsy 68-736  [Hydra magnipapillata]
MTSFFAINNITSDQHVAFLLAALPLKTYKTMEELTAPEVPEDVSYEELVTKLETLEIRKSSLISRYEFGKIYRGTEESIQ
TFAHRVIRAAQDCKFLPSERDGRLRDQFIIGINDGAILRAILRGDDALSFDDCVKTASVVAQTRLDAACLSVNEEVNAIH
RTTGTTSYTRRKKEIRCYNCESLNHFARECTSLCKKCLHKHAAKDCYKRQRNQENLNGTSSH
>Gypsy87_DR_gag#LTR/Gypsy 181-1539 [Danio rerio]
MADEELDAAAARGDRHLADAANTHLPFKIDFPHSFSGDGTEPFSSWIQRFEVALNVSAVPLDKAKLLPVKLIGPAFAYWQ
SLSSDVKADYALAKASLTTVFGRTTFLATFQTFLNARPRKPQEPLEVYAAELTNLVTEAFPQYDAAARNCEIFRRFVTGL
DPSLQLKIHEHGAVTLDNALKIATQCERAQLAISVANPSAVMPVVLNQQPPTNTVTANHITELASVIAELRTDLHALRQS
HQRQMDERVDQLSHRISSLQDKRTSSTHSSHQSCAAVDYDITTRHRQPDLDDHHRNCCCTSQHTHGCRQHPQDDCCPAQR
RRDYFEHEQAPPTDSFSRQRRYSYSRSCESHPPYTTHYAEHTPHRPYVNARSGRSPSRERRSDYNPEYVTHYKRPTSHSP
QYRHSSYRRHSSPSPPPQSHKSSRYSSSPTRHVHFTESDSEKAPFSPHRGNE
>Gypsy85_DR_gag#LTR/Gypsy 278-1621 [Danio rerio]
MLDDQEDKLTSEISNIAAGRGRGALLTTPDKGFWFMGPEYTSTGRGRVLRPSFETRPDVSCSPIIRSEKQEGTKNESKIS
SDMSDLIRQIGSEIGVAIRDSLLQNRDSGLSPGNSSREMPDSSKTDMPNATIIDATKLNLVLKSEITAPPYYRGDGTDKC
SIIEWEELMRVYINKREIVDTERVEEVTNRQMGRARDIIKVWLSNKTITPTVDSVFAILRHHFSDCSSSGMPLADFYSVK
PYSNESPLDYWIRLNKAAEVAEHCLREEGRTLGNRSRELAVMFIRHCPDKELSLVFKSKSAQSWTASEIQERLDEMLREQ
KATGRVTCQHTAKILEPADNLTPLSPQGAESAAPPTDNGALDKVLSMLEKALVCNAQSVRGGWSKNSNRQSRVCRVCASK
DHSTTAHCKMDNLCFKCFSSGHRSFNCEKTVHGEGTSGRVDEELQGN
>Gypsy-1_CR_gag#LTR/Gypsy 37-2373 [Chlamydomonas]
MGQKSGGSAPPATKQKSAGATRTTHGKPTGATTAAGKRASDQTSDHVKSRRAIAQGAEMGAAKDTSDVMDDANVVSGGSP
AGSGKRRIPGQHGSNQGSPGQGHRDSNGDTVMGEVVGPGAGGTRAGAAGTQPPASTLPPSALNATDRRKRLMAAYLAAYA
RVNGHVQHYTRAAQPIVTADDVVRAHELATVMGTSLTLTNQTMLDYILDVAQNEALPPVPTTAGAPADAPAGPMPAGGGN
RAVLPTAVTPMDPVMAEIKQSLTRLDTALTDLKLQAQHDRKELEDLIALNAPPPAPATDTDLTNTASADSSSTSESEPSE
AVDDEPSEVEPPAAEPPVQAAAPAADAPPPIRLLAFGAKPAAAKTAPTSTDQHRRRRQKYVSLGVSRFRQSPQYVPLRDD
LYRHQNRASIKAFTKAFVKSVDAYLTAKRLDKMQALDELRAYEAMDIEMPLQYLRGENAEKLTENDRRRFYTQRITAPPT
YAAAAAAAPSTIDEVIAQRDQVGTGGTGKKPKVPEPQKFSGVTDKHITCTTTWFDTFVEYCDEQKLEPSRHLLFFCTGTA
QEWMVGYRHDMQLAKMAITTSRLRTAFLQQFGDVRRHTPAEARRRLMMLEHKQQPGERIATYTQRFRLIARDARDMAELD
RIEHYMNGLAAQFQAVCRTDSEGKDWTSLDSLVSYALGQESRKTQSKGATLAIANTSRPPFRSRPRKQGCSTGGGGGGGG
GGYGGKRPGGGARDSGKPKKIRADRNTCRHCFEHFANGFPAQHLQDCAVLKRKKAMAA
>Gypsy-1_GM#LTR/Gypsy 23-4488  [Glycine max]
MAENTRLKDLQTEIRTHSDDIRRIGQTMDMRYQEQNDKMLQIQNSMDQIQLAMNLLLQNASQPPGSSPNNGSPMVQPINA
SLPVKEISLGFPHFDGTTPVMEWIFKAEKFFTYHNTPDASRVDIAAMHFDKDVVAWFQMSQKLSLVSTWSELTRALESQF
GPSPFDCPMAELFKLQQTGSVSDYYLKFMSLANRSLGLSNEALLNCFISGLNPDIRRDVVAMCPPTLLRAVALAKLFEEK
YGPVSKPFRNSYSHKYSQISSTPVSINAQPKTQIKSSLPPLLPTPPGPPIRSSNVKRITPAEMQLRREKGLCYFCDEKFS
FNHKCPNRQFLLLQMEDDNEDPISTIVPQGTQEDEIVESEDHHLSFNALKGGRGVGTIRFIAYIEKLPVTVLIDGGSSDN
FLQPRVAKFLKLPVEPATQFRVMVGNGNYMSAEGLVKQLKVQAQGNTFQLPVFLLPISGADLILGASWLKTIGSHIADYD
ALQLKFLWKGKFTTLQGDRELVPEQAQLHRIRRMVATNSIAEVYSLQLMEPDVVPKSMLDLPVTMEPELALLLHTYSVVF
DTPSSLPPQRSHDHSIPLLSGSQPVKVKPYRYPHSQKEEIERLVSGMLDEGIIQPSKSPFSSPIILVKKKDGSWRVCTDY
RALNAITIKDNFPIPTVDELIDELFGASFFSKLDLRSGYHQILLNPDDRHKTAFRTHHGHYEWLVMPFGLTNAPATFQSL
MNDIFAGILRKFVLVFFDDILVYSANWKDHLYHLEVVLSILKQHQLFARFSKCCFGVQQIDYLGHTLSGSGVAMEGTKLE
AIQKWPEPSNLKQLRAFLGLTGYYRRFVKSYASIAAPLTDLLKKDSFKRSVAASEAFQQLKIAMTSAPVLAIPNFKEIFV
LETDASGSGVGAVLSQNKHPIAYFSKKLSLRMQKQSAYIREFYAITQALAKFRHYLVGHKFIIKTDQKSLKELLEQKLQT
PEQQQWLPKFLGFDFTIQYKPGKENIPADALSRSFMMAVSTPIHSWINKVMDLTQTDSQLSKIYQSCLQGQNPSSEYSIQ
NGLLXFKGKIVLPHDVGLLNQIMEEFHSSKIGGHSGVNRTTARIGAQFYWNGMRSDISKFVRECAICQQAKVDHVLPAGL
LQPLPIPQQIWEDIAMDFIVQLPPSQGFTTIFTVVDRLSKFGYFIPLKSEFNGKVVAEVFITNIVKIHGFPKTIVSDRDR
IFISTFWQQLFKAQGTTLAMSSSYHPQSDGQTENLNKTLEMYLRCFVFEHPKSWVTMLPWAQFWYNTSFHQSLGMTPFQA
VFGRPPPAVMHYEVDPKDPDPLKDLLQLRDQLLSKLKGNLLKAQQYMKMQADKKRRDLQFKVGDLVLVKLQPYRQHSVAL
RKHQKLGMRYFGPFPVIERIGTVAYKVQLPESAKIHPVFHIALLKPFHGKSSPPYLPFPLTSSELGPMLCPWKVLDVRVV
KRLEATMSQLLIQWEATEAKDATWEDLRDICESYPQFNLEDKVVFDEEG
>Gypsy-1_Gav#LTR/Gypsy 1975..4131[Crocodylidae]
MPELVVRLREVLRRISNAGLKLKKEKCVEFLGFRVDATGIHPTNAKVEAIHKAPTPKNKQELQAFLGLLNFYHSFLKDKA
TVAEPLHRLLDKDATWKWTKLHDKAFNDVKRLLSSDSVLVHYDMEKPLLLTCDASPYGVGAVLSHLQNDGREAPIAYYSR
TMNKTERNYAQIDREALAVVAGVRKFHDYVYGRKFTIVTDHKPLLGLFTKNGPTPQIISPRMLRWSLLLNAYDCEFQHRP
GKSIANADAPSRLPLSCPEFTVPPLSEVLMLESSSDPPLQADDIARMTAKDPVLARVLNWVWRGWPSAKVADEFKPFVTR
QHELSALKGCLLWGNRVVIPNAGRTRVLDALHAGHPGIVRMKALARSYVWWPKIDADIEQTVKRCEPCQATCHAPAKAPV
HPWEVTRTPWSHLHIDFAGPFQGQIFFIVVDSFSKWLEVVSVASMTSCTVIRVLRQLFATHGLPDTIVSDNAAQFTSEEF
KKFMERNLIRHTTSAPFHPSSNGQAERMVQTTKDALKRIVDGDWNQQLANFLQQHVTPCTATGRSPAELLMNRQLKTCLD
RLHPDMVAEYQTRQEIQFSKKQDVSPVRTFEPDEPVYIRNYATGPQWVPASVLGATGPVSYKIQTPDGKTLRRHVDQMRG
RVSDNVTSAAPEGVAPLVEPVLMSPSAAVLDPSTLPVAEATLEEPKEPTAVASEKSVTPEVGRTRRVTVQPKYLQDYIT
>Daniela_TM_p2#LTR/Gypsy #ReverseORF 9362-10690 R) [Triticum monococcum]
MTVFAHLCENFVGVHPNVALFRHFFMPRVERGEPLSGGIAWVSRTGKKDSYLEGEFRGKWEEWRADWCWIVEENPQPFTA
RRQTAVVRGSDWSDVAPKDDRLRIAVTRIQCLRLAGLTVGTVGADFLRRRIAPLQERRRPAWEFKNAADIMRLRPGLNYN
FTVLELNAILQELFKYDPEHPEVFRLPQGVVPLCNNSALDRIRVMMPLCDSHGLVPTWQEPADEVVQEFFDNLVEVPIRP
DEKNGLTRDTTDAELKRIATRLEEAAAAAAAGEFAFTMEEAEAAEAASRAAREELAGKKELAGRGEPVGKKELAGRDTEP
SEPAEDTSGSLEINSSSSSSSDSSPQAEPPSPPRRRLHKAGDVARRQASRQSPRRATRSTAASTVAAGAPHAAAATGAGS
SRTTASAPAKRPREPTPPPFRAGRDPDFDFSVFSSDEEEEEE
>SFV1-12C_AMi_gag#LTR/ERV4 39-1751[Crocodylidae]
MELELVKNCPWRNGKRHVQNAVELGAHIAYHQAGGTGGRLVSGYLSLEGEEETAKEWEVHLHPGAFGCVMGSERVLFRPR
EEGGTEPFAGPKPSEESTALSQEFARRMRCAQEGEEPALINLTLAPELRDPELLSELCGKLEGESHPAIGRTGSEHGKGK
MLNAMFRMITTLMREKADLEARLLAVQAAEQTATGKNPGPPPFQDGVEREGSCPEDPEEKGGSFDGRAEVQSMTPPHEAA
SLPTAPPSQYSKGATEKQLYPVPLTDAATSQTATHPVAARSRVIGAQSTACITANTYHAETWTELQELCKKSKMRPEETL
AMWLGRLVVEFGSDLVDREKASFLTGRASWSGGHATDINIVTCNVHWPIPLPALVADQASRKSYAWHGGCPLKVDIKQIL
LATIGISYCTWNPRTHALGLTPPQQRGPWPHRYLQDPGAVPITLNGVEACIEVYGGKAATILRILLNPLVGRPAGNLLCQ
LPRLQALIKPGIETTSDSEHRSTVCPHKSSSRRPHVSPQRTPEERIMFGFLLQHSGLTKRQLRILGDESQWKLAYELGFR
YSVKLDDESSC
>SFV1-9_AMi_pol#LTR/ERV4 1798-4837 via tfasty with SFV1-1_AMi_pol, 1 frameshift. [Crocodylidae]
VAAAGTGYAGRDPTDDRPYATFDVSATSSSRAIPVRFLLDTGAQVNVLRPEVPHVRTSKTLFVRGLHATSATTVVKFFIA
PYPLYAVMGDLNILGVPAIKALKLKHAIFSALPLTITPATKHQPQLSVPTAWRYQPIPTRPALQPKVDALLRGLEQQGRI
RPVNASTYLSAGWGIPKPSNPDDARLVVDYRQANRRCVPLQLPHTITEIMDAITAVQREGEWFATTIDLKDMFYSIPISD
PQGILNMCVGGKMYTWAVCPQGYRNAPALATAAMGETLRTFEPQRPPHAHIWSYVDDIIVLGTDRASVRATTACLNQHLQ
DAGWTVNATKSHLEPTTDVTFLGTRFSGSFRWGTTHGTDVPPLDVHPSTLKDFQALLGRLNWFRNFLTPNHLPLLQRLQQ
QIRKKTQRRCPWTPKDQRNLVALFTTVRETKLQAPPMAARLTISIGYTTAHLWFTTSASDQKPLAFAGHKTLQSHQHRYG
CLGKIMLAAQMAEHLAPSPGTLLGPGASLLTSLDPFRPHQEFQGTLKTWTGLVLRHQYYWSGWAHSDAEGSPDPTAVDTP
ARPVLYGTTTPAWMAADGTTRGDGRYGYYCKPCYDVHVISSNLGPNSAQQNELLAFYSVLEHCLERHNGTLPVPVIAIDS
EYIYRIATGAADPSENSLLWEDVFQILRHFVVLPMLKHTRSHRPDTDPIHAIIDKLLAANSQNEFIEAWPKEVRAVSTAT
ADYNPFLSWLHERWGHPGPRKATRTWHAQAPTGPAPSLKDWQDISRACIACAQNKPHPHRHQRGTFDPALFSPGKTWQLD
LLGPLPGAKPPNKALAIVDLGSRQLLVLPTRRSNAPAIMTCLNHAFARWQVPHVIHSDGGPPFTSKALDNFARERNIQWH
HHLPYHPQSNGVIERHIGLYKEHLRLQGGGSYKNWTKHSDLVLTALNSDKPLWEDRTALPRPPWTPCYAASDQVWVSVPV
TNDRQPVPVAGTIVQPGDFPNTYLISLQAASPPRNVLAHHNWLSHRTDLSPVAP
>SFV1-16_AMi_gag#LTR/ERV4 12-1975 via tfasty with SFV1-20_AMi_gag, 1 frameshift. [Crocodylidae]
MGSPKERERNNAQNLRSSKSEEDGVDYVSLNCPWRDRRRPLVESTTDLQDHARYHRAVTGPIKGYFSVIAAANSKGKKEW
AVENLTPAAFACLMSSPAVRYRPYDKAQDVIPFITSKEIADNKDKNPRREYGRCIKYVKQSSGYATPSDRFNCPTLREES
RESEILTELREQLEEKGRESSRWKCGGEKWKKGKVINIMFRTITELLRLAANQAGDIEALAQDVADKNAKLARLKSQNGG
DPEEKNKLAKKRPEKILTDVAGEEGAAHKMGGVSDITPGGEENTGPLAPPTASPGNVGNNASAPPTVLTKGSITDPLAPP
PSPPPYKIPSVYPSLPQKADTASAPTFQVNPIATVKTTVEGEVTRTVAVYRTRTRGEMQDLIRETKISPEETPVMWVGRL
VLNHGGELLDMEEAITLMRHPVWSGGTCTDQTQIANNWVWPIPISAVVVPTLLAQIHKWHANPPSHPTPLQLLYSIAGMS
YLIWNTEVRPVMLDEQQRREYWPHRWCREPGRAPVEADAVKACAELYGGDQTPLLKVTLHTLIGSPIGNILTELPDLTRT
SKVEAATASPIIQVAEGQGKKHQSPRSSLKMSPNVQWKERTPEEKARFGFLLKNSGLTPIQLRRIGDQGQKELATRMGFK
YKKWDPDKRTQQKNE
>SFV1-17_AMi_env#LTR/ERV4 5092-6751 via tfasty with SFV1-10_AMi_env, 6 frameshifts. [Crocodylidae]
IVLILSGAVVASVPPTDPGTSNSILSLLSVWANITGSNEESGLTACLRLPLSVDDPVLDPNPEPLNVTAWFQARNRDPHQ
KVNLTLPGAKGPRRAHVPYQYRWPLPLTLDKMNAPNCSVGLTNWKTYSSDQMSPAAKRSSLCAKQLLGSEVPWGIHTRRG
RLGQRPDNSLTWDPKKLSPTWYLALPPEPSLTTIEPKSNNQGPPPFGHSPLLTPHTIATWDDSLAVNVSQNTGWHSYYYP
ILRAARISQWCHNLSAAPPNPTALPGEVQKTVWKGQSCNTISTPAPRGLLWACSDGHLYTTLPATLSGIQCFLATVVFCP
PLYASTARPPTPMMRRHQRRGATWSTLTGGGRVLKSVQWAIEGTFLWGGIGIGKARVAIAQLAEQVEHLTNQTADSFDLI
NQQLQATSQMAMQNRLALDAILIKEGGLCQFLNLSHDHCCVGIPNVSLPLGKQVEKMRKIAESTNNIAGLGKGWLASIFG
WMGWEASSWLMHLLTPLITLCLPLSAIAIGLSIGCCIVQYLKNKLITLSAFVYTRLPEDESNDNEYDDENEL
>SFV1-16_AMi_pol#LTR/ERV4 1975-4528 via tfasty with SFV1-8_AMi_pol, 2 frameshifts. (SFV1-11_AMi_pol almost identical, with errors)[Crocodylidae]
VAAVEAGTGGRFSSDERPYITLTIQKLSSQEEMSVRFLLDTGAQVNVIKPEVYHKKTSRIIFVQGLHAVASTPVIRFKVN
GKTLSGTLGGINILGVPGIKSLRLQQHLISALPLEILETERHRPIVKNPTSWRYKPIATKEHLRASIEKLLQSLQHHGCI
TEVKSSTYLSPGWGIPKPGRPSEARLVVDYRQANRRCALLQMPANHTITEIMQDITKAQAGGEWWAVTLDLKDMFYSVPI
IDDQGILNMCVGGKIYGWNVCPQGYQNSPALATAMMNNSIQSFRNIYAGTQEINIWTYVDDVAIMGRHRGAVHQAATNLR
AHLWREGWKINDEKSMNEPANSFTFLGTHFEGQYRSGTTHNVMPTSAKRPKTQADFQALLGHLNWLRNYVAPPHLKVVQR
IQQQLRKKPRNRKPWTNYDQRALESVLTEVTNTRLTVPSENTPLNVYVGFTEEHIWATARNTETEHPVYMGHRTLQEHQH
RYGCLAKAMLATQLVEHLAPYTGTLIAPGGSLLTSLNPGKIHPEYQGTAKTWCAVVLRFQYYWSGWKVLEGDLPLSEDEE
SLMPKLYGTTEPGWVASDGTSRENGAYGFYCKPCQLTKIYNAHNGESVQASELRGFHLALEHIRGCHDNTLPVPVIAIDS
EYIYRIMTKTARATEHPQIWEDIRETLLQLETLPLIKHTRSHRGDTDPAHQVIDQALAQGVLSRCTEAVQSIQISNKNSQ
GTVDDQLFLKWLHEFWGHPSAARARIRWQLDAEKGPNIKRWQEIVQACPTCAKEKQDKHRHKHGAFNTEYFSPGKTWQVD
ILGPLPEAKIPNKGLAIVDLGTRQLLVLPIRKTTAVKVQESLINARARWQVP
>SFV1-8_Gav_pol#LTR/ERV4 2333-5776 via tfasty with SFV1-19_Gav_pol, 1 stopcodon. [Crocodylidae]
VTAVGVSPATDGCSNPSEQNDKREADFETGLTRTTLKRDELELKCNETKLSERTELKRRNPKLNESKRNEMHQSELKPSE
QKQSKRHSKLKETVQTESKRTKPKRSELETKLEANVANMTEGVQEGVEGNNDEGKLRSTNVTVAANNAKLFENDPRPYAR
IEIQNPDDPNNITYSKFLLDTGAQVNVIKPSVPHQRTTKVIMVQGLNAVTATHRVKFLVKGHHKHLDAVLGGINILGVPG
IRTLNLKYQVLEALPINIVNPPDRHRPILKTTSMWKYTPIPMKDHLREALGKLLDRLIKKRSISPIQASTRLSPGWGIPK
PGKPQEVRLVVDYREVNKRCVTLAQASPYTLLQSLREMAEYQARPWWGTTLDLRDMFFSIPIRDDDGILNMCVRGQIYKW
NVCPQGYCNAPALATSAINYSLKGFAEDHPESNTVRIWSYIDDIAIMGRDQNFVKEVTKTLVGHLTKDGWEINTEKSHLE
PKTSLNFLGTTFNKAIRYGTIHGKFDIPVKADLSPKTKTEYQSLLGKLNWFRHYISPEHLPVLSKIQRQIHEKSRRRTPW
TSNDAKALNKLLTAMENTPLSTINLTVPLVVTVGFSEEHLFVTVRGSEGSLVYLAHRTIQSAQHRYGAVGKILLAAQLAE
SMSCGHGKLRAVGATLLPRLSHERPDPCFQGDPATWSALVLNHLYQWHHWKHEDVPPPKAVTEDQTIILYGTTEPAWMAS
DGSTRDGGKYGFYCKPCQKHDIYSGSTSAQKNELLGFREVVSHCLTCHNGTLPVPVIATDSQYIYKVITGNASPTENMDI
WGEIYRILPEFTIPPLIKHTRSHQSDTDPVHEYIDKLLQEPDHTEQVLIAQDTDKEICTDPYLDWLHENWGHPGPRTCQQ
RWRKESQNDPKHGKYRDWKRVTQACEACATEKTHPTSNLKGALNPKTFSPGSSWQVDLLGPLPGAAVPNKGLIAIDLGTR
QITVIPLCKTHAAAVISALTSIFAVWQVPKVIQSDGGPPFTSTAIEKFAHLHNISWHHHLPYHPQSNGVVERAVGRYKEA
LCLKGQGSYKNWTKFNHEVLTNLNTGKEMWNQRNVEPVEPWKxKFKTSELVWVTLPDPKTRHPKVLKGVIGKAEYYPNTY
TVELEESGQKILAHHNWLSRRSGTNPIT
>SFV1-6_AMi_pol#LTR/ERV4 1784-4834[Crocodylidae]
VAAAGRAGGSTLKPDPADPRPYTRLIVYDPTDPTTQREVFFLLDTGAQVNVITPSTPHTKTTKTIMVQGLNATATTAKVK
FSVAGYRKALEAVLGGINILGIPGIKALQLKEQILQALPLSITGPDRHRPTLCNTSTWRYKPIPTKDPLKGALIDLLQRL
EQQGCIKPITASTRLSPGWGIAKPGKPNEVRLVVDYREANKRCQPLMQPSPSTLPQCLYEMAQFQKDTWVGTTLDLKDMF
FSIPINDVEGALNMCVNGTMYKWTVCPQGYRNAPALATGAMNDTLKEFRTSYILPGQDELKIWSYVDDLAIMGRTRQAVA
EVTNNLVTHLNNKGWTVNLRKSKLQPTADITFLGTKFIDKTRFGVTHGSPDTSPLEGQLPTDKKRLQQLLGYLNWYRHHV
TPTHLPVLAKLQRQIRNKSQKFTPWTERDGKDLHKLLTAIRTTPLHAFDFADPMTVTLGYTASHVWATAHNSRGELTYTS
HRTLQAAQHRYGAVGKILMAGQLIELLSHGHGTLRAPGATLLPLLNAGRPDPQFQGEPSTWNTLVLNHHYHWHCWKCEDL
PPSPDTAENASPVLYGTTAPAWMASDGTTRGDGGYGFYCKPCHDTKLYAGRSSAQKNELLGFKEVIQHCLQHHDGTLPTP
VIAIDSQYIYKIVTGTGAPTQNLDIWQDIFDMLSTFTVLPLIKHTKSHKPETDPVHEVIDKLLEDPLRTDIVLAVEQVKQ
KGKIDPFLAWLHDHWGHPGPRACHTRWRSATNNHTPYGSRTDWERVAQACEPCAKEKCHQTKYQIGALDPLQFAPGKVWQ
VDLLGPLPGAKPPNKGLVIIDLGTRQLQVIPLRKSHAAAVISALTAAFASWQPPNTIQSDGGPPFNSTALDKFARLHNVT
WHLHLPYHPQSNGVVERHIGLYKERLRLKGGGTYKNWTKLNHDVLISLNADKTLWDKSXPRHPEPWHPKFAPDELVWITI
PHPHQSHPRVYKGKIISAEPYPNTYSVRFDEGEKQQQILAHHNWLSRRSHLHTNTVS
>SFV1-6_AMi_gag#LTR/ERV4 33-1784[Crocodylidae]
MESELVKNCPWRSGERLTSDSDDLWAHIAYHQAGGRSSNVVAGYLSLRGEEGVGKEWAAQLGPSSFGCVMSRKGVVYRPR
DEVETLSLARVKATGAANPTPAQEFARCIRHVREGGEGTPPDKFNCPTLAPQSRGHELLTQLRENLEAEGRTATRWAGPK
WDKGKMINVLFRTVSLLLRENANLETQLATVSKAAVEMAAQQNPEPPPENGAEEKEKYPGGPEKKEEEGGATKERAGTQP
TAPPPGAAPPPTAPPPYYGEEPPSGNLYPTLPPGTPTPPAAAHPIALVKQTTDPQGVTRTTTTYRTRNRAELQELCRESK
IKPAETLVIWLGRLVVEFGSELLDLEEACFLTRQASWSGGHATDLXLVMGNXHWNIPLPSLVAGQIDHKSHAWHDGRPGR
ATAEQLLLAIIGVSYCSWNPRVHQLGLTQAQRXGGWAHRHLRNPGAVPATLEAIEACVEVYGGESAITLRLLLNPLATQP
AGNILSQLPRLQALMKSATTDPADAPNRLTAYPVEYQRPRHHQPDPRQESKLPPQRTPEERAMFGFLLNHSKLTKQQLRV
LGDAGQRQLAHELGFRYTEKPKNE
>SFV1-7_Crp_env#LTR/ERV4 5072-6262[Crocodylidae]
MVLPLDRLLLCNTSMQQAIFMWWPTFNNSSCHHSAWVSQLISTPYFGKVVSLPAGLQTLVSACKAAAVQCNYPTSTDAVT
YVPSNFSPAAFGQVCAHAPKLILHNCSNSPATAPCNSRSPKDALPPGWVWLNLNTSHAFLDIQPDPDYTWTLVTTALNMK
QFILYRESPFFQRPQTGRAKRSAWDQMSHLERLGTIFPSVGTPLALTKLVYLNQAFEAFGNSTKTGFEKMEQAINKLQQA
VYFNRLGLDYLLATEGGLCTALNDIYNGSSPSESDSQLQCCLRFTPASFNLTDVLQGIDVALNLTRQACDIGSNFDWMFS
WLDVFGLGHLKRLAVTALTICSVGVIICCLFCFLLQWLKSRLVRLSAFVYTRLPSDEATMSSAVQEPYPEDEYGTII
>SFV1-8_Crp_pol#LTR/ERV4 1727-4729[Crocodylidae]
VAAASSEARPGDERLYAPLWYHHPTEPKTVPTPHHTLLDTGAQVNVITPSLPHTRTGATIFVQGLNATESVPVVKVLVSP
FKPLRAAAKPLRAILGSQVLLGVNGIRHLHLQGPVMQALPTEEQSPISFTVNAPAHRPEPLHSNPWKFRPIPTKGPLKAS
LDKLLKSLLTQGRLEIITQSKYLSPGWGIAKPSDPSQARLVVDYRVANSRIKPLATPAAMSISQLLHDVRLHSQSWACTI
DLKDMFFSVPLTDDEGLLNMCVDGVMYKWKVCPQGYRNSPAAATGALSPVLKSVVPPNSVQIHSYIDDILVMGPDSTAVQ
ETTERVSRALTQAGWTINMKKSIKRPSQQFTFLGITFTPEGISIEKPDQLSCWRERRPTTKKQFQELLGQLMWVRHFIPS
HLHPFIRHLQKKTRGNSWHPCFWDRSDEKKFDELLEFFRNPPTLHGFSPSKTLQIKYAWSDDQLSLVVYNAEGYPVYYNF
TAIAGEQHQYGLGLACLAVRLAEPFSAQQGVILGPSAETIPALDPNRPSTCFNGLLTTWAKLVNETHARWSHWQFKEDPH
PVTTYQERILLYGTTQPAWLASDGSTKGSQKYGATCQACDWMEIQHVGYDTNAQVLELMGFLCVLQHISTAHNPSRPPCI
IAIDSEYIYKMCTGGGTPTAHVPLWAAILDLVESLHPAPLIKHTQSHCPDTDPVHAHLDAKLQAAPASVLEQSPTSSDHL
IQWLHEFWGHPGAAKAQRRWRRLGGEPTEARAHQWVAATRRCAACQANKPTASKRHEKRAFDSSHFSPRKTWQVDLVGPL
PGAKSHPKGVVAVDLGTRNIACVPLRRTTAKDVQGALQQIIQWWGEPTEIQTDGGPPFTSKLLDRFASARSIVLHTHLQY
HPESNGVVERAIGVLKQALRTTGGGSYKGWERRLPEVLTNLNSDKPHWTVKPLMPPTPWKPVYAKGDLVWLTIPKGPQPS
TPVEATVLEPATYPNTYWCDGPTARILTHHNWLSRREKHLS
>SFV1-8_Crp_env#LTR/ERV4 5210-6262 Probably N-term truncated[Crocodylidae]
MLSACYSAHQSCGISPLSDGLKVNSTLVSEMQFGNFCTQSARRMIYPETKKGQSAITGNCPVLPGSRKHNQKLPPGWIWY
NLDTHLAYLSIPKKSKSQWTLVTTAIGSPHFSFYAEKSTPRNQHAPGRKKRNVWGEMSHLERLGTIFPSVGTPLALTKLV
YLNQAFETFGNSTRTGFQRIETAIKDLQHAVYLNRLGLDYLLATTGGLCQTLGGIYNNSAPRLSLNPHENFADCCLRFHV
DSFNLTDVLEGIDVALNLTRQARNVGSNLDWMFGWLDMFGLRHLKKLALTALIICAIGIAICCLFCFFLQWLKSRLIRLS
AFVYTRLPSADQNSYEAVQAPYNESEYDAMV
>SFV1-17_AMi_pol#LTR/ERV4 1895-4940 via tfasty with SFV1-2_AMi_pol, 1 frameshift. [Crocodylidae]
MAAGHTGGPLKPDPTDSCPYAELVVYDVTNPTIRRKVLFLLDTGAQINVITPTTPHVKTKKAIKVQGLNAVAATTKVKFT
VAGYHRALEAVLGGINILGIPGLKALELKEQVLQALPISVSKMDQHRPTLRNTSTWRYKPIPTKGPLREALVTLLQRLEQ
QGCIKPVAASTHLSPGWGIAKPGKPNEVRLVVDYREANKRCQPLMQPNASTLPQCLFEMAQFQKGKWYGTTLDLKDMFYS
IPIVDSDGILNMCVEGTMYRWTVCPQGYRNAPALATGAMNDTLKDFRTSYALPAESELKIWSYVDDLAIMGRDQQVVAEV
TRHLTDHLHDKGWTVNLKKSNLQPTRDITFLGTRFTGATRSGVTHDETPELGPLETPLPTNKKRLQQLLGHLNWYRHYIT
PHHLPVLARLQRQTRDKSRKATPWTGKDKKDLRNLLHAIKTTPLHALDFTETLAVTLGNTANHVWATAHNPRGELVYASH
KALQAAQHRYGALGKILLAGRLVELLSHGHGTLRAPAATLLPLLDAKKVDPQFQGEPATWNEMVLNHHYHWCCWKCEDLP
PSPDAQEDSTPTLYGTIAPAWMASDGTTRNGGGYGFYCKPCHDAGIFSAPEGATAQRNELLGFEAVIRHCLQHHDGTLPT
PIIAIDSQYVYKIVTGTATAAENLEDWERIWDMLSRFAIQPLVKHTKSHKLETDPVHEIIDKLLEDPLRSDVVLAVKTDD
PKTHSDPFLTWLHEHWGHPGPRASHLRWWSTTATPAPYGTRSDWERVSRACEACAKEKCHRTKHQVGALDARQFAPGKVW
QVDLLGPLPGAKPPNKGLAVVDLGTRQLQVIPLRKSNATAVITALTTVFATWQPPKEIQSDGGPPFNSKALDKFARLHNV
NWHLHLPYHPQSNGVVERRIGLYKEQLRLRGGGTYKNWTKHNHEALISLNEDKTLWDEPELQKPPPWEPKFKPDELVWVT
VPHPHQTHPRAHKGVICKPELYPNTYSVYLDENKDQSPILAHHNWLTRRSTLKTD
>GGERV28_pro#LTR/ERVK 1938-2759 [Gallus gallus]
GSGRIPPERDTVEPLTASSSQPRATTRVSKLRPATRGSLGLDLATATDVTVIDQKPVRVPSMATGPMIIDGSPVGCLLLG
RSSTGLNGVTVLPGLIDADFTGVIQIVIQTLFPPVHIPAGSRIAQLVPLPALTQSLQPESDMTRENKGFGSTGGLVMLTV
PMKQRPVVTITLYSAGLQRDIRALLDTGADITIVAQHCWPQSWPLERVDKGVEGVGGAVAVSRSVRPIQIFIDGRYAHCH
ITVMPLPTGVQALVGRDVLDQLGIVLTTRDSGFR
>ERVB2_2_RN_pol#LTR/ERVK 2612-5263 via tfasty with MMTV_pol, 1 stopcodon.  [Rattus norvegicus]
MGAIEGNLFADQISWRSDQPVWLNQWPLKEEKLQALQELVQEQLRLGHIEETNSPWNTPVFVIKKKSGKWRLLQDLRAIN
STMHDMGALQPGLPSPVAVPKNWEVIIIDLQDCFFNIKLHPKDCKRFAFSVPSSNYQRPYQRYQWKVLPQGMKNSPTLCQ
KFVDQAISSVKKKYKNSYMIHYMDDILIAHPQRAIVDQQLIDLVNALEEFGLIVSEEKIQKYDNLKYLGTNIRGNNITYQ
KLQIRHDRLRTLNDFQKLLGNINWIRPYLKITTGELKPLFEILNGDPNPISTRQLTIEACEALNKVNEKLTLARVQRLDP
AEEWSLCILKTNCTPTACLWQNGILEWIHLPHISHKVLVSYDTLCTQLIIKGRHRSKELFGRDVHNIVIPYNKAQLEQLL
QKNDEWIISLIGFTGKIFFHLPQDPVLTFVLENEVIFPRGYSKTPLEDGINIFTDGSSNGRSVVCIQNRDPIIRKNSGYS
AQQAKIEAVLIAFTEVKQAFNLYTDSKYIFNLFPEIETAVLSPRTKIYLKLKQLQESIQQRQNKYFIGHVRGHSGLPGPI
AQGNALADSLTKIMQAVETAKKSHDLHHQNAAALRYHFQVTREQAREIIKSCPHCPDWGHTLKMGVNPRGLKPRILxQMD
VTHITEFGKLSYVHVTVDTYSHMVFASARTGEAVKGVIQHLVQSFSYMGIPKKIKTDNAPAYVAKTLEHFYQQWNIAHVT
GIPYNPQGQAIVERMHQNIKAQIQKLRSTGKYTTPHHLLSHSLFVLNHVNTDNQGLTAAERHWTEKESAPKPLVRWKDQL
TGLWKGPDVLIASGRGYACVFLQNAESPIWVPDRLIRPAKGNGHPSPTPKEAEPPDNAEPGQKDQGDSPRAKNKTTPDAD
VDAT
>HERVK9_gag#LTR/ERVK 153-1556  [Catarrhini]
MGQVWALVRSTLELFHTDDEEEGEYNEVTEEVTEHVYLPAKAKAAKEGEVHPYPSAPPHYYFEEKEWPDPPDLSFPEDTG
RKVVAPVTVRAAPRATALSSIQAGIQQARREGDLEAWQFPVRIHPPDQQGNIIATFEPFPFKLLKEFKQAINQYGPGSPF
VMGLLKNVAVSSRMIPTDWDALTRACLTPAQFLQFKTWWADEASIQAARNAQAQPQINITADQLLGVGGWAGLDAQVVMQ
DDAIEQLRGVCIRAWEKITSGGEQYPSFSAIKQGPREPYVDFIARLQESLKKMIADSAAQDIVLQLLAFDNANPDCQAAL
RPIRGKAHLVDYIKACDGIGGNLHKATLLAQAMAGLRVDKGNTPFPGACFNCGKHGHTKKECRKNQRVRPPDRGKKKTAE
PEICPKCKKGKHWANQCHSKFDKDGNPISGNAMRGPSRAPFQTGAFPAQAIPSPLYNVCPPPQPVVPQ
>MacERVK2_pol#LTR/ERVK 2642-5173 [Cercopithecidae]
KVFKHVATVQQPQALPLKWKTNIPVWVEQWPLTREKLEALENLVQEQLSLGHIEPSTSPWNSPVFVIKKKNGKWRLLTDL
RAINACIQPMGSLQPGLPNPSMIPQDWVLMVIDLKDCFFSIPLDQKDCERFAFSVPVFNNSQPLSRYQWKVLPQGMLNSP
TLCQEFVHRALDPVRKRHPSVLLYHYMDDILLAAPTREKQQDAFASLQTQLSFYSLNIAPEKIQVDFPIQYLGYTLGARN
IRPQKIQIRRDHLKTLNDFQKLLGDINWMRPVLGIPTYQLQHLFSILEGDSHLDSSRHLTPLALQELQLVEEQLQKAHLH
YILPDVPLSLCLFHTLHSPTGMIHQTNRPLEWIFLSNKTSKRLTTYIDRLAELIIKGRHRCRQLWGGDPSLIISQFTHSQ
ITYLLATSDSWQVACASFVGQFSTQYPKSPIFSFFRQHSVLPFSPISVFPVQGPTFFTDASSNGKAGYWSVHQSRVTVYP
YPSVQQGELFAILMVLLDFPTTSCNIVSDSQYAVYVTSYISQATLPLCATSSLQKLFSLLSSTLSQRRAPLFITHLRSHS
QLPGPLVHGNTQIDSLLIGHLQAAEQEHALHHTNSSGLQRRFHLTRKQARSLIRACPSCAPLSIPSFHPGVNPRGTQVNQ
IWQMDVTHVPSFGRLKYVHHTIDTFSHFQWATPLPSEKADSVITHLLACFAIMGIPLILKTDNAPAYVSRKLQVFLQQYN
IQHITGIPGNSQGQAIIERANLTLKTQLQKQKGGNESPRNQILKVLFTLNFLNQWRQLQDSAAVTHLSSPPSVIVPADNL
RVWYPNEEGKYVQGQVLKQGRGYALVLTGSGPEWFPTRRLKPC
>IAP-d#LTR/ERVK 2518-5207 via tfasty with RNERVK9_pol, 6 frameshifts and 3 stopcodons [Mus mouse genus]
NAGSQKExSGQTGFFLGATEGALPITWKTEDPVWVPQWPLPSEKLKAVKELVQEQLELGHIRPSKSPWNTPIFVIKKKSG
KWRLLHDLREIKKQMILMGLVQRGLPLPSALSQNWPIIVLDIKDCFFSIPLHPNDMVRFAFTVPSQNHAEPDKRFEWTVL
PQGMANSPTMCQLYVDAVEGVRERFPNVKCYHYTDDTLLAAPRDALLDEAYSFVVTQLKEQNLVVAPEKVQKDVVVNYLG
TKIMAKYVSPQKIQFRTDGLCILNGFQKLLGDIQWVRPYLSLTNKQLQSLYDILPGNTDLNSPRYLTDAARKALLLVEQS
IQSAALKRxDESKQFILCVLQTESQPTGVLWQVAPLLWIHPKISPAKTLVYYPASVAQLALIGIQQSMQFFENAPESLIV
PYNAKQIEVLTAMEDNWAILRCSFQGLIENHYPKDPILQLVKVHPVIYPRITARDPLPDAPLVFTDGSKTGQGAYLITGS
SPVTIQFPPASPQVIELQIVIKVFELIAGPFNLISDSQYVVNMLQCLEIVAKINLRSTIGELVIKLQRIILNQHSRLFIQ
HIRAHTGLPGPLAEGNDIVDKASRKCMAFLMASSIMILACDFHAQFHVNSKTLSSQFKISRAEAREIVKACKTCAPLLPQ
VSVGVNPRGLRPLHLWQMDVTHFLEFGKLKYIHVSIDTASGIIFDSLQTGEKARQAIAHCFEAWGAWGQPKELKTDNVPA
YISASFVSFYKIMVHLVHELPYNPQGQGIIERAHHTLKKCLINPKGGIAPAVSTPRERLAIALFTLNFLNEDKQGYVAAE
RHVNPDISPKGTVMWKXVLTGCWKGPDPVLVWERGSVCVFPQDHRQPLWVPEQLTGAVQGKQNDEDVDVPVAGNAPASEN
xRATLGNYVCVPETHA
>ERVB1_3_RN_gag#LTR/ERVK 307-1892 via tfasty with RNERV14_gag, 3 frameshifts and 2 stopcodons. Other proteins are all chewed up and probably very close to RNERV14 proteins [Rattus norvegicus]
MTLLKEQGTAIRIKMAKDFVKSIERCSPWFLGNRGLHVPDWEQVKLDFPKVLQKEGPKTFPISTFSLWRLVKDALLSDNA
KVKELRGEMERTFGAQDEQTKRSVASSSRDSESDSGSESEREETALTREIELQHKLAKCPVQRRPKGLMKEIPLQSTAPP
IYDEAFLDEWEGxYQEVTSRGVVLMLVKRKQAFPVMEVPNPQNPNQIVRQHVLLSFKKLKALKEAVSAYRPLKPFTQAIF
ESYVTANLTPSDKQQLCRGVLSGSDYLLWRGEYQEQCISLARLNAQADNPQGGVEMLTGTGEYAALQNQIQYDPAVYLQI
ATAATRAxKGLPNMAAGDQISKVIQGPSEPFQEFVDRLLQMAGKLFGDLDTAMPIVKQLAFENANKYYKEAIRPHMSKSL
NKYNKLCKDTNRAYHMGQVMAKVKGDAGNRNCFSCGQPGHMRRECPKNRAVQGPGCRKGHHWGNECRSKLDIEGCPPSAG
KPAEGPTLGPQTKVYRAMNLAIPNLICFILQNNPFKSRTLSEVPQKAEY
>ERV2X1_ML_gag#LTR/ERVK 132-1940 via tfasty with MacERV3_gag, 3 frameshifts. [Myotis lucifugus]
MGNSGSRERDLYSQILKSMLKARGCSVKRSQILEFLNFINETCPWFPEEGTVDIQMWEKVGKQLRDQYTAEGPEKIPIPT
FTLWPLIRDCLDPAQASSRMPKRDVAKTLQPAVEEGESLKISPLPSAPPPPPPAAPAAALPSVVKSPPNKDLPPKYEREP
EIEEKRGKHHREWDDSDDEEDLAHSFAKMALATRPLRLQADAQPNVKVISTPAQVLSPLQQTLREARRAGEDVTGFSMYP
VVERPDPTNPGQVLRVHEPIPFKILKEFKSSVSMYGPTSPFVLSLLDTVTSEALLPLDWQTLAKACLSPGDYLMWKSNWT
ELSTEQAARNQQHGVPITLEMLTGTGAYHSLQAQMMFPLQAYQQISICGTKAWRELPTKGEKTMDIAKIIQGPEEPYQDF
VARLLQAVDRMRWRSRFGISTSEATGFENANRACQEALRPYRKKGSIPGVIRICADIGPSYVQGVTLAAALKESLQKDHS
EKRTCFNCGRPGHLARNCRQQVASGGQGSSAPSLPARQPDLCPRCRRGKHWANGCRSQTDINGQPLDSRQGNGKWGRPRP
HQTIGALLQTVGALLPAEGLPSGNSTTPPQEVQDWTSVPPPDMY
>SFV1-18_Gav_gag#LTR/ERV4 33-1823 via tfasty with SFV1-3_Crp_gag, 2 frameshifts (seems to have a 40 AA deletion). [Crocodylidae]
LESELICYCPWRTGDRDCADSDDLWEHIAYHQADGPTGLCINGFLSLAGEPGSKEWAVQLAPSSLGCIMSRKKVTFRPRD
EVGNLSLARVKPCGTVNPTPAQEFTRCIRYVREGGEDTPPDKFNCPNLPPDLRGHELLTQLRETLELLGRMVTKWSSSKW
DKGKIINILFRTVTALLRENANLESQLSTASKSAEDLAVKCSALSAPNGAEHREKTVPENGTDHKEPCPEFGAEPKGRLY
PSLEGLMTNDESSPNKTTPTSWPDHLPTTAPPPPYLGELDETSAMKGRKRNQRKGIYTSALPISVHKFTTGGAGAPAQLT
TTTRSRTRMEMSDLRKETGIQPEETPIVWLGRLVVEAGNKTLDADEAMQLVRNTAWSRGLVTDPIPVTTNNHWPISLPAL
VVETLMKKLHVWHEGKTKQPNAIQLLHAVIGASYALWNPILQPLNLTPHQQNAAWPQRYLTNPGQVPCLLEAIEAASEMY
GGPQGLTAKLVLNPSVNGATANILGLISRLQSAIGSNLTQVHITTYPTQTPSPEGPSRRGPPRTAPPQRTTEERAMFGFL
MNHTKLSKSQLRALGDEGQKVLAEQLGFKYNEKKKNE
>ERV5_MD_pol#LTR/ERVK 2700-4850 ERV5 unlikely to be autonomous; pol N terminus truncated and gag/pro missing. via tfasty with ERV17_MD_pol, 4 frameshifts and 4 stopcodons. [Monodelphis]
MSRMIRLFSQQYVASALHSVRLHFPALYIIHYMDDILIAAEDESQISKAIYSQLEITLQKYHLVIAQEKIQKTSPVLYLG
AQLYATSVMPQKIQLRKDCFNTLNDYQKLLGDINWVRQYSFLTTTELQPLFKILEGSSDLNSPGTLTPEASLALEIVEDK
LNQAPLNHYQPQLAVEVTIFATLMLPTGALTEKQRVIEWLHLKSKMGKALQSYDCLMAQLIWKGIEHVVSGLGRYPHEIQ
VPIAKDILQKYLQSHDEWSLLLVYPIAITTYTPQGLFSFLSQHPIVFPNILRDRPVSGPNVYVDANANYKAGVYKEGSSP
VIFTTPYSSTQQNELTAVLLAFWLFQEPFNLIMDSKYVFQSLQGIEQAVIRSTQSNVQMLFCKLQTVIxQRTHPVYVMHV
RSHTNLPGPIFKGNDIIDQALIAQCYLTDMQLAEESHHRFHQNSTALCKMFQLTKDQARSIVKKCPNCVPNHPPMHIAVN
PRGLNSTDIWQMDVTHEPSFGRLKYIHVTVDTYSGFLWASCLMGERTSHVINHCLMTFEMAGPPRTFKTDNGPAYTSKQF
FLFCQTWGIQHLTGIPHNPQGQTIVEHSNQILKNILLKQKGGDSTPHRxLAIAVYTINNLIFTSNNISRAEKFFSAFSYE
xNSGTTTPVLPAPEQKFGMWKDDNQTWHRGKDHPVVLQGRGFVCVSTGKDRVWLPPRxVREIDHKEKDKERTQEASQ
>ERV147_MD_pro#LTR/ERVK 1831-2694 [Didelphidae]
QDPSKRAAGKLEKGPASGPXKQRGSCRIQPEKSIXPXAISSLYRATPGSAGLDLCSSADLILTPDSPPVLIPTGVKGPLP
EGTMGLIMGRSSLSLQGVXVIPGIIDSDFXGEXQVMVQPPPRTVSXXKGQRIAQLILLPYVQTANPVLKTXXGQGGFGSS
NWAFWVQEIKNSRPMKXIKVNRKNIGGLLDTGADXSCIAGKDWPRAWPTKDTPSNLVGIGQATNVAQSSQILTWSXGKLS
GXFCPYVVPSLPLTIWGRDILSQMKVSLVTPNXESQTPLDEGPSXFS
>ERV45_MD_gag#LTR/ERVK 231-2015 [Didelphinae]
MGHSESKERKLFTGIIKHTLQKRGVKVSKTQLTKFLDFIQICSPWFPEEGTIDLNTWEKIGFDLKSYYAEHGPEHVPAEA
FSFWSLFRDALDPTHEATRLAQTFSNLSATEKTPLLSRQNSRAEIFRVSVSDQESEEEDDNEEKLPSRXEATLEREAAKY
NTDWDFPVRLRPPPPPIHTSSIQKGKRKEKGEQSRPPPPPRTVGFQGAIQNAQRDGDFSLFPVVYAGGGDSDDEEEPRWE
PLPYKMIKEIKTACASYGPTSPFTLTLVETLAGNWMTPYDWNQTAKACLTGGDFLLWKAEYEEAAKREAANNKRKGNRIT
KDMLLGEDDWTNCAEQIKLPKKALYQCTTCALEAWKKIPVSKGLTSGLANIKQGSEEKYADFLDRLIQQIKRTIPHEDAA
DIVIRQLAYENANKTCQGMLQNVKRTGNISDFVKACEDFTPSFVQGVAIAAALQGKTYPQVIRNPGARKECFKCGGIGHY
RRECPQGDIRPTRTPPPTFNYGPGPCNRCGKGYHLPKYCQSRYHRNGYLLPARPPQNMQQGNFKRGPARAPQNNGATTVG
LSQKNPFLPQQSAPCIEQPQEAQDWTSAQPLVSY
>LTR82_MD_gag#LTR/ERV1 504-1819 via tfasty with MdoERV2_gag, 2 frameshifts  [Didelphinae]
SLRNPQSKKRDLSLNTPSSLEPTQSLSSPAPCNSAHTQTTSTPHPVLTISKSTQTPRPVLTISKSTQTPPTQPISPPTPI
TCSMATQTKNQEAETKNNSVTGLFPLKEVPTFNKSGDVILLRHHTPFTPPQDIERFKQNIPSFEDEPIVIIKKLESIFHT
YDPRWIDIENLLQAFLTEREKNKIISLVNQAQGRRAVHWPLQDPKWNPNNEQDYTRLCQAREALLTTMRACSDRPGTWTK
FENLKQKPNENPSQFMDRLIELGGRYIDLDLARERDVRQIRRQFVKNCCKVVKDYFKTNCPNWASMDLEELRRVAVYVFN
GHEKKDEENSDLIETLRREIKSLKEEIEREKANQAVAIASLQEYTNQTPMCYFCGKRGHVMLNCRNWNQVLNNINFRNNG
NSRNNNFRNNNNYRNNNNRNTFRNTNPNEANDNLQQYI
>HERVS71_pol#LTR/ERV1 3443-7038 via tfasty with CfERV1_pol, 1 frameshift and 1 stopcodon.  [Primates]
QGSLTLGPQEPMVTATVGGQPVRFLVDTGAEHSVLQTPLGSVSNKKMAVQGATGAIQEYPVTHSxEVXLGQKRATHSFXV
VPECPFPLLGRDLLHKLQASISFSAQXAHLTLGNATSXTAQLLLTTPLSEEYLLVSPSXSPEXNTNTLLLXXQTLFPRVW
AESNPPGLAKHHPPVVVELLATAIPVQVKQYPASQQAREGINPHIQRLLQAGILTPCQSAWNTPFLPVQKPGTNDYRPVQ
DLREVNKRTVTVHPTVPNPYTLLSLLPPEHTVCTVLDLKDAFFAIPLAPKSQPIFAFEWTDPRSGDTTQLTWTQLPQGFK
NSPTLFGEALQQDLNTFRASHPNCTLLQYVDDILIATETMDGCLQHTRDLLYLLQELRYGVSAKKAQLCLPRVSYLGYEI
NKGKRALTSARKEAIPRIPTPTTKRQVREXLGAMGYCRXWILRFAEIAKPLYTATRGNGPLIWTDTEEQAFQNLKKXLTX
APALALXNISKPFHLFVHESQGVAKGVLTQTLGPWRRPVAYLSKRLDPVAXGWPSCLRAIVATASLVQEADKLTLGQNLT
LTAPHAVETLLRSAXGKWMSNARILQYQSLLLDQPRLTFSPTRCLNXAXLLXDPDSXTPVHDCQELLETTETGXXDLQDV
PLKKADATVFTDGSSFLEQGVRKAGAAVTTETDVLWSQVLPASTSAQKAELIALTQALRWXKDKRINIYTDSRYAFATVH
VHGAIYQERGLLTSAGKIIKNKEEILALLEAVWLPQQVAVIHCKGHQKENTAVARGNQKXDSAAREAARPSVXPXNLLPA
VSFPQPDLPDNPAYSAEEEKLASDLRXNKNQEGWWILPDSRIFIPRALGETLVSHLHSTTHLXGAKLAQLLRSRFKIPRX
QSLTDQAALWCTACAQVNAKQGPKPSPGHRLRGNSPGEKWEIDFTEVKPHRAEYKYLLVLVDTFSGWTEAFATKNETANT
VVKFLLNEIIPRYGLPAAIGSDNGXAFTSSIAQSVSKALNIQWKLHCAYQPQSSGQVEXMNHTLKNTLTKLILETGENWV
XLLPLALLRVRCTPYQAGFSPFEIMYGRAPPILPKLKDAHLAEISQANLLQYLQSLQQVQEIILPLVRGAHPSPVPDQMG
PCHSFQPGDLVFVKKFQREGLTPAWKGPHTVILTTPTALKVDGIPAWIHHSHIKKANKAQTETWVPKPGSXPLKLHLSR
>MacERV2_pol#LTR/ERV1 2042-5611 [Cercopithecidae]
GCQGSGAPPEPRLTLSVGGHPTTFLVDTGAQHSVLTKADGPLSSRTSWVQGATGGKLHKWTNHRTVNLGRGMVTHSFLVV
PECPYPLLGRDLLTKLGAQIHFSETGAQVLDRDGQPIQILTVSLQDEHRLFDAPVITSLPDVWLQDFPQAWAETGGLGLA
KYQAPIIIDLKPTAVPVSIKQYPMSREAHIGIRQHINKFLELGVLRPCRSPWNTPLLPVKKPGTQDYRPVQDLREINKRT
MDIHPTVPNPYNLLSTLKPGYNWYTVLDLKDAFFCLPLAPQSQELFAFEWKDPEKGISGQLTWTRLPQGFKNSPTLFDEA
LHRDLTDFRTQNPEVTLLQYVDDLLLAAPTKEICIQGTRHLLQALGEKGYRASAKKAQLCQTKVTYLGYILSEGKRWLTP
GRIETVARLPPPRNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESTPFTWQTEHQLAFEALKQALLSAPALGLPDT
SKPFTLFLDERQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPHALEA
IVRQPPDRWITNARLTHYQALLLDTDRVQFGPPVTLNPATLLPVPEDQPSPHDCRQVLAETHGTREDLKDQELPDADHTW
YTDGSSYLDSGTRRAGAAVVDGHNTIWAQSLPPGTSAQKAELIALTKALELSKGKKANIYTDSRYAFATAHTHGSIYERR
GLLTSEGKEIKNKAEIIALLKALFLPQEVAIIHCPGHQKGQDPVAVGNRQADQVARQAAMAEVLTLATEPDETSHITIEH
TYTPEDQEEAKAIGAIENKDTKNWEKGGKIVLPQKEALAMIQQMHAWTHLSNRKLKLLIEKTDFLIPKASTLVEQVTSAC
KVCQQVNAGATRVPEGKRTRGNRPGVYWEIDFTEVKPHYAGYKYLLVFVDTFSGWVEAYPTRQETAHIVAKKILEEIFPR
FGLPKVIGSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRAR
NTPNRFGLTPYEILYGGPPPLSTLLNSFSPSDPKTDLQARLKGLQAVQAQIWAPLAELYQPGHPQTSHPFQVGDSVYVRR
HRTQGLEPRWKGPYIVLLTTPTAIKVDGISTWIHASHAKAAPGTPGPTPPETWRLRRSEDPLKIRLSRI
>MER84_gag#LTR/ERV1 626-2326 via tfasty with CarERV2_gag, 2 frameshifts.  [Primates]
MPQGSCSPLSKPNMGSIHSSIXSXSPLGCILKNWSHFDPQTLKKKRIIFFCNTAWVQYKXXNKLNWPINETLDXNIILQL
DSFCRNLGKDSEVPYVQVFLALSQNPKLHKNCRVCFQGTSSLPDSDVLDDPSFCLSHSPQPAPXSPTPSPSAPSPSQPPP
YPDTLSPSHTHTGVTYATSTESSENPKNILPLRKVANGDLGTIRVHVPFPMSDLLQIQSKLGSFSQDPSKFIQEFRALTI
AFDLTWQDIFVVLTTCCSHEEKSRIWSLARAWADEAHARNPNDNRAGAECCPRHRTQLAVPGRRCRPKQGRGRRDYMITC
LLEGMKKAVIKPVNFSKLREITQEPSENPALFQARLVEAMHKYTNLDPESPEGQSILAIHFISQASPDIRQKLQKLEQGP
QTPFPTLLNTAFKVFNNREETSKIKKAQLEEEKCRRQANYMATALAHSFSLANNPKARPYNTNRTGACHRCRNPGHWSRE
CPKPPGYKPPPGPCPHCKQEGHWKSECPSLPHEGGAPLPSGLSQPQPRQPTRQGGPAERGQGQGQGQAPLTLFLDYDQAS
ESHPLDD
>MDEV_pol#LTR/ERV1 gi|3309125|gb|AAC31805.1| pol polyprotein [Mus dunni endogenous virus]
GSRGSDPLPEPRVTLSVEGTPVNFLIDTGAEHSVLTSPLGKLGSKRTIVVGATGSKLYPWTTKRALQIDKNMVTHSFLVI
PECPAPLLGRDLLTKLKAQVQFTSEGPQVSWGKAPLACLVLSTEEEYRLHEEQPKGAAPLDWVTAFPNVWAEQAGMGLAK
QVPPVVVELKADATPISVRQYPMSKEAKEGIRPHIRRLLDQGILVACQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVL
DIHPTVPNPYNLLSSLPPERTWYTVLDLKDAFFCLRLHPKSQLLFAFEWRDPEGGQTGQLTWTRLPQGFKNSPTLFDEAL
HRDLAPFRAQNPQLTLLQYVDDLLIAAASKELCQQGTERLLTELGNLGYRVSAKKAQICQTEVIYLGYTLRGGKRWLTEA
RKKTVMMIPPPTTPRQVREFLGTAGFCRLWIPGFATLAAPLYPLTREGIPFEWKEEHQRAFEAIKSSLMTAPALALPDLT
KSFVLYVDERAGIARGVLTQALGPWKRPVAYLSKKLDPVASGWPTCLKAIAAVALLIKDADKLTMGQQVTVVAPHALESI
VRQPPDRWMTNARMTHYQSLLLNDRVTFAPPAILNPATLLPLTNDSVPVHRCADILAEEIGTRKDLTDQPWPGAPSWYTD
GSSFLIEGKRRAGAAVVDGKKVIWASALPEGTSAQKAELIALTQALREAEGKIINIYTDSRYAFATAHIHGAIYRQRGLL
TSAGKDIKNKEEILALLEAIHAPKKVAIIHCPGHQKGEDLVAKGNRMADSVAKQVAQGAMILTEKGNPSKSPEDENYDIK
ELFWTSDPLPYFFEGKIDLTPEEGIKFVKGLHQFTHLGVEKMMRLIKKSRYQVPNLKSVAQKIINSCKACAFTNATKTYK
EPGKRQRGDRPGVYWEVDFTEVKPGMYGNKYLLVFVDTFSGWVEAFPTKTETAQIVAKKIFEEILPRYGVPKVIGSDNGP
AFVAQVSQGLATQLGIDWKLHCAYRPQSSGQVERMNRTLKETLTKLAMETGGKDWVALLPLALFRARNTPGRFGLTPFEV
LYGGPPPLIKDGGTLVPDSGSVLPSSLLIHLKALKVIRTQIWDQLKTAYTPGTTAVPHEFQVGDQVLVRRHRTGSLEPRW
KGPYLVLLTTPTAVKVDGIASWIHASHVKRAPSQDEETHEDNWAVEATDNPLKLRLRRRSPLHHPGPREPQPSCPSSTVL
GSA
>HERVP71A_env#LTR/ERV1 5556-7574 [Primates]
KENMGWPHFWKLIWLGWATIQRAEGQNGNWQGTPPYPIRLVINVTKMVAPQTIRFDACQVLPCGNLENQRQLSQADKYLC
PEPDTGYSRASPCPSWDDVWWTTQFQGWTVNMGWVTPSWRPLKNKLHLSKGSPPNNCQNLECNPILITIDNPAVLDQEPK
VASRVYGLGADITGKDPLGRFVLKLIKNSTSHLPGTTPTPDPNKHFSPPNNDPKRVKIIEVKDLRQTLEIETGYRDVNAW
VKWVKFSVQALNKSNCYACAAGRPQAQVVPFPLGWDTDPEGMRCMLALYQDKDAWGNETCKSLSLLFPALRRSDPRAIPS
FSIGNMNHSSCLSRQGAEFNKPVGELSTCTHILNVTGESGNGNYSALHIPRADVWWYCGKRNLRNLLPSNWTGTCALVQL
AIPFTLAFHKIPENTHGHRNRRDLTNSFDPNIYVDSIGVPRGVPNKFKARNQIAAGFESALFWWSTINKNVDWINYIYYN
QQRFISYTRDALKGVASQLDATSRMAWENRLALDMILAEKGGVCVMLGGKCCTFIPNNTAPDGTITKALQGLTTLANELA
ENAGIDDPFTGWLEGWFGKWKGMVASILTSLIIVAGVLTAVGCCIIPCVRGLAQRLIETAINKQMPMTYQQNNLLLLETK
LNSLSYEEESKQLLERFEDQKGLDENETKGSK
>HERV15_pol#LTR/ERV1 2707-6360 [Catarrhini]
MVSMEVGGRLMDFLVDTGADFSVVTHPISPPTKNCATIVGATGAKEKRPFCKSRRCVIGGQEVQHEFLYMPNCPVPLLGR
DLLQKLQAQISFTPEGNTTPEFGKSKAMVLTLTVPEAEEWRLYELCARRLPEPDLHSMWGMLFKVPGVWAEDNPPGLAAN
RPPVVVELNPHAAPVRVRQYPLPREAIEGITKHLNRLYEQGIIVKCKSSWNTPLLPVRKPNGEYRPVQDLRVANKATVTI
HAIVPNPYTMLGQIPAEAAWFTCLDLKDAFFCLRLAPQSQPIFAFQWGQSQYTWTRLPQGFKNSPIIFEEALATDLEAFA
PPSDNSVLLQYIDDLLFAAPXREECLQGTERLLHLLCEAGYKVSKDKAKVCFREVGYLGFMVSQGQRRLGSARKEAVCAL
PTPVTRRQVREFLGAAGFCRIWIPNFSLIARPLYEATKGKEREPLLWEKEQEKAFKDIKEALIQAPALGLPDVKKPFFLY
VDERKGMAVGVLTQLLGSWHRPVAYLSKRLDLVALGWPHCLRALAATAILIEDANKLALGQKLIVRVPHAVVTLMEQRGR
RWLSNSRMLKYQGLLCENPRVTLQTVNTLNPATLLPVEEPDWKDGGLPHCWQDLPHCCINTVDEVFSSREDLRDTPLESP
DVEYFTDGSSFITDGVRYAGYAVVTQHSVVEAQALPSGTSAQKAELIALTRALLLAKRKKVNIYTDSRYAFATLHAHGAI
YKERGLLTTEGKDIKNKEEILQLLEAIWAPEKVAVIHCKGHQIGKSYEAQGNRKADREARRAAMSKVLPEERTPAMPLLI
EPPLLEVPNYSSSEKAWFRQETGKYIKGGWWLFSDGRLAVPETIAPRFVKQIHQGTHIGRTALETLIGQHFYVPRLSAIT
RAVCEQCLSCVRNNPKQGPTRPPGIQEMGAVPCENLLVDFTELPRAGGYRYMLVFVCTFSGWVEAFPTRTEKAREVTKVL
LKDIIPRFGLPLTLGSDNGPAFVAEVVQQLTQLLKIKWKLHTAYRPQSSGKAERMNRTLKQLLKKFCQETHLRWDQVLPM
VLLQVRCTPTKQTGYLPYEILFGRPPPIINQIRGDLKELGELTLRRQMQALGVAMQEVQSWVRERIPISLTDPVHPHKPG
DSVWVKRWNPTTLGPLWDGPHIVIMSTPTALKVAGVTPWIHHSRLKPAAAVTPDDDQWISQQDPDRPTRIVLRRNPTTGK
KDNCPAPTTPEAGQSTHG
>HERV3_env#LTR/ERV1 6389-8368 via tfasty with HERVE_env, 5 frameshifts and 3 stopcodons.  [Primates]
ECPHCTHTTWSGSXITRTLLYHTYYECTGTHLGTCTHNQTTYSVCDPGNGQPYVCYDPKFLPGTWFEIHVRSKEGNLLNX
TKVPPSHKGAISLYFDICQATSIGSTFPVISSSEEYYNSCHKNICXPPAFSASSPETXCWXCXIWSCNLQSLGXVMLTKI
PAEPDCKASTCSPVNLTTLEPNLAVWTTGLKAPxEYKSAARKQTQESIYILSKNLGPVHPKIPVFKSFYEHXNQELPELP
SFARNLLAVDRLHVQLAENIASSLRVSSCYVCGGTNMGDQWPWEARELMPQDNFTLLSLPPNXRSRARAFWLLKTSIIGX
FCIARWGKAFTDPVGELTCLGQQYYNETLGKTLWRGKNNSKPPHPGPFSRFPSLNHSWYQLEAPNAWQAPSGLYWICGPW
AYRQLPAKWTGACVLGTIRPSFFLIPLKQGEALGYPVYDETKRREKRGITIGNWKDDxWPPERIIQYYXPATWAEDGMxG
YRTPIYMLNHIIRLQAVLEIITNDTAKALNLLAQQATKMRNAIYQNRLALDYLLAQEGGVCGKFNLTNCCLEIDDNGKVI
KDITXKIQKLAHVPVQTWKGWSPDSLFGGWFSSLGGFKTLVGIVLAILGXCXILPCLLPLLVKNIQXATEALVDKXTTTQ
LMALTKYQPLPNEENCLXMKN
>HERV-Fc2_env#LTR/ERV1 5396-7213 [Hominidae]
RKHRLSTTGPQNSPQPGFVSPMARPSPLCLLLLLTLLPPIVPSNSLLTEPPFRWRFYLHETWTQGNRLSTVTLATVDCQP
HGCQAQVTFNFTSFKSVLRGWSNPTICFVYDQTHSNCRDYWADTNGGCPYAYCRMHVTQLDTAKKLQHTYRLTSDGRTTY
FLTIPDPWDSRWVSGVTGRLYRWPTDSYPVGKLRIFLTYIRVIPQVLSNLQDQADNIKHQEEVINTSVQSHPKADMVTYD
DKAEAGPFSWITLVRHGARLVNMAGLVNLSHCFLCTALGQPPLVAVPLPQAFNTSGNHTAHPSGVFSEQVPLFRDPLQPQ
FPFCYTTPNSSWCNQTYSGSLSNLSAPAGGYFWCNFTLTKHLNISSNNTLSRNLCLPISLVPRLTLYSEAELSSLVNPPM
RQKRAVFPPLVIGVSLTSSLVASGLGTGAIVHFISSSQDLSIKLQMAIEASAESLASLQRQITSVAKVAMQNRRALDLLT
ADKGGTCMFLGEECCYYINESGLVETSLLTLDKIRDGLHRPSSTPDYGGGWRQSPLTTWIIPFISPILIICLLLLIAPCV
LKFIKNRISEVSRVTVNQMLLHPYSRLPTSEDHYDDALTQQEAAR
>HERVH48_pol#LTR/ERV1 2271-5850 via tfasty with CfERVF2_pol, 7 frameshifts and 7 stopcodons.  [Primates]
TDALATTFASSKPRVTLMVAGRPVCFFKINTGATYSALPNFSGTTQSSQVSVVGINGQVSKPRATSPLFCSLHTFSFTRS
FLVLPSCPTTLLGRNIFPKLHTTLRLPRSPxYPTHQPKPLSGASNFLLLLQPPTLKRATFSCPPSVVNPAVWDTSTPFSS
VAKHHTPVRITLKEPTQFLSQKQYAIPQVALISLKPIISRLLSSHLLCPTNSPFNTPVLPVKKLDGAYHLVxDLRLINQA
VLPVCPVVPYPYTLLSTIPSDTTHFSVLNLKDAFFTIPLHPDSQDLFAFMWEDPDTHLSRELTWCILPQGFRDSPHLFCV
QKALAHDLCSLSLKLSTLFQCINDLLLCSPSQRDCNTHTIPLFNFLAERGYQVSPKKAQICTPSVTYLCLTLTPRTRELT
TDRISLLxSLLPPQTKQKNLSFLGLAGYCRLWVPSFALSAKPLYQAAKGPLHEPLNPAKGPLHEPLNPAQTITQPFRLLR
KALTSASSSALPDLTKPFSLYIDRxRKVALCILTQSKGPTAQVVAYLSKQLKATILRWPACLQALVAAAVLTLESLKLSL
HANLTVYSTHNIKNMLAHCSVLSLISAPWLLQLYALFIENPLLPITILTSSRLNTAMLLPEVTTAQDPTHFCVNTVQTFL
IPFPNLTEQPFPDAPFTxFVDGSSFLHQGRWHAGYAIVSPHTHTLLEANLLLLSTTSKKAELVALPQALTLAARQQINIY
SNSRYTFYIVYSHSSIWKKRGFLIAKNTPAINGSLISKLLQAARLLQKVAIIYCRGHQTPDDPISAGNRLADQITKQVAL
QPMQGQFLSLSFFSPLYSSEEKEDFQAQNLQKQGPWYVKERCFVLPHSQSLPHLQSLHNSFHVSYKPLLQLLRPILTCPH
LSSHVxEITQSCSICHSVSPQGSLRPPPFPTHQAQGQVPRQNxQVDFTHMLANKRLRYLLVFVCTFSGWVEAFPTTSEGA
NVVTQTLIMHIIPRFGLPTFIQSDNGPAFISQIIQGVSTSLGIKWVLHTPYRPQSSGKVEKINSVLKAQLTKLALETRQS
WTKNLPFALMRLRATPKAPSFYSPFEIMYGRTFLLGPPPLPDSEPLGNYLPSLIQTLSFIREAANKAMPLPVDTSLSSER
NCLTGTDVFICQPNPLKKLQPKWSGPYTVILSMPTAVRIQGLPYWIRRTRVKLTPQGYSFLQNINSGQHPRSPCI
>HERVE_A_env#LTR/ERV1 5698-7824 [Catarrhini]
GGRQALLQSHPEADWSTHGRSMRRIIVGLIFLIIWTCIVKTSTDFPRMEDCSQCIHQVTEVGQQVKTIFLFYSYYECLGT
LKGTCLYNDTQYKVCSPGNDXPDVCYDPSEPPMSTVFEIRLRTEDWWGLINDTSKVLARTEEKGVPKRIILKFDACAVIN
SNKLGRGCGSFSWEKGYMTENKYICHELGLCGNECGYWSCVIWATWIKNEKDPVHLQKGKNGPSCTKGQCNPLELVITNP
LDPRWKKGERVTLGIDGAGLDPRVNILVRGEVYKHSPEPVFQTFYDELNVPVPEIPGKTRNLFLQLAERVAQSLNVTSCY
VCGGTVMGDQWPWEARELVPTDPVPDEFPAQKNHPDNFWVLKXSIIGQYCIAREGKEFTHPVGRLSCLGQKLYNGTTKTV
TWWSSNHTERNPFSKFPKLQTVWTHPESHRDWTAPTGLYWICGHRAYAKLPDRWAGSCVIGTIKPSFFLLPIKTGELLGF
PVYASREKRSIAIGNWKDDEWPPERIIQYYGPATWAQDGSWGYRTPIYMINRIIRLQAVLEIITNKTGRALTILARQETQ
MRNAIYQNRLALDYLLAAEGGVCGKFNLTNCCLHIDDQGQVVEDIVRDMTKLAHVPVQVWHGFDPGAMFGKWFPALGGFK
TLIIGVIIVIGTCLLLPCLLPVLLQMIKSFIATLVHQNASAQVYYMNHYRSVLQEDMGSENESENSHY
>MuLV_gag#LTR/ERV1 172-2109 no M [Mus mouse genus]
ICIWRFRGRTDEFVFPTAALGDVSEASGARWVARSVSPSPDRFGLFGAPPLSEGDVVLLGDERSKPSPPPSEFLLSVFRR
NRAARLVCLSVVLSFVCSLLFWTVSKNMGQTVTTPLSLTLEHWGDVQRIASNQSVDVKKRRWVTFCSAEWPTFGVGWPQD
GTFNLDIILQVKSKVFSPGPHGHPDQVPYIVTWEAIAYEPPPWVKPFVSPKLSLSPTAPILPSGPSTQPPPRSALYPALT
PSIKPRPSKPQVLSDNGGPLIDLLTEDPPPYGEQGPSSSDGDGDREEATSTPEIPAPSPMVSRLRGKRDPPRGSFHHLSG
FPHSVWGVMVSCSTGRFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKA
VRGDDGRPTQLPNEIEAAFPLERPDWDYTTLRGRNHLVLYRQLLLAGLQNAGRSPTNLAKVKGITQGSNESPSAFLERLK
EAYRRYTPYDPEDPGQETNVSMSFIWQSAPDIGRKLERLEDLKNKTLGDLVREAERIFNKRETPEEREERIKRETEEKEE
RRRAEDEQKEKERDRRRQREMSKLLATVVTGQRQDRQGGERRRPQLDKDQCAYCKEKGHWARDCPKKPRGPRGPRPQTSL
LTLDD
>SFV1-2_Crp_pol#LTR/ERV4 1841-4837 (SFV1-15_Gav_pol near-identical; may be same element).[Crocodylidae]
VAAAGRPGGNEDQRPYCSINVRHPDSQRQPITVRFLLDTGAQVNVIQSTVPHILTSGKILIQGLNSIDQAQRVKFFPSHY
PKGLTAVLGTINLLGILGIRALQLKEQVLQALPIQVSQIHMPRLTRLSRWRYKPIPTKETYRAALEILLQCLLDEGKIQR
TTTSTYLSAGWGIPKPGNKTAVRLVIDYREVNKRCHTLAQPQSKTLSQIVHEMSQVQAKNWVGCTIDLKDMFFSIPINDE
EGLLNMCIEGSMYKWNVCPQGYSNSPALACSEMNATLRRFMTKAGEEDQDVKVWNYVDDLAIMGFDRNKVKQKANQLVTH
LQQEGWTINDKKSNLEPTTCIQFLGTTFDGSTRQGTAHDLPNQRNWKTHPPQTRQDFQTLLGQLVWLRSYIPSQHLPALA
RIQTQLRNKQQKKHPWTPRDTEKLSDLLTATLETRLEAYNPSEPIHIIAGYTSTHVYATAKNTEGELIFNTHKTLQTCQF
RYGIIGKALLALQLAQPLHQGQGSVTLPGGTLLPLLDPSRPDPTFGGEVSTWSTLVLEHHYCWHNWSHHNFPPPPEEIPQ
RVTLYGTTQAAWMASDGTSKDGGAFGLYCRPCHKLDLRHAESGDSPQLCELRGFALMLQHCLNDHDNTSPVPVMAIDSQY
IYRIVTGTADPSEYIDLWEDVFTTLERFKRLPLIKHTKSHQPETDPVHEVIDKMLQNPLRTDTVYTTSTTHSEPYIRWLH
EHWGHPGTKAAYDRWRHTGGSQEHGPRRLWRQVAMGCEQCAKEKAHPHKAEQGAYDPKYFAPGKVWQVDLMGPLPGAKGA
TKGLVAVDLGTRQIAVLPLRKTRGSDVTKALTKIFAFWQTPKTIHSDGGPPFTGKTISTFTTLHNIAWHHHLPYHPQSNG
VVERAIGLIKERIRVKGNGTYRNWTEHLSKVVLNLNVGKALWEPRNTETPLPWAPKFQPGELVWIAVPHPTQKRPRVSQG
EIVRKGDHPNTYIVNIKDSNSHLLAHHNWLSRRSKQLEC
>ZVERF_env#LTR/ERV1 gi|21070180|gb|AAM34209.1|AF503912_2 envelope protein [Danio rerio]
MNKINKLVVAWGVMLVIILWVICHMEFRGTTKEKRSVKEGGGTGVRITLEREEGKDGMWQFDLCQVIDCGKDQLAWRGYD
VYGCLWPTTTRPPDGPHCHTWHNVNWKTAPGFIKKMLKNSPLAKADSIQNRLRLSRGYQHSWGGWKNTLIISLKNGNDET
DTYITLGVDVEGKDPLGLIKISIKKPKPTGAPIITDLTENKKKVIQSTDYSNLTPLDLMTLETGYHETNLWLEWVTNAAE
ELGFEGCLACAAGRPQLNTEPAPLHDYDSWGYKCMLKLTKEKSPKNCTALSNLYPPAGNKSSMGVALKRRKGNYTCFNLT
TSSASKILVGAFKREWCGQMIQEGHDKLGGWGRVGLYYACGEKVVLDRIEPTMEGVCAMIRVAVPMVMIGNRAINGHKNR
RKRSVNSDFDLTRNSPTYIDAIGIPRGVPDEYKLADQVAAGFENIPVIAALFPVTPNKNVDRINYIHYNVQRLSNLTRDA
VSGLKEQLAATSLMAIQNRLALDMLLSERGGVCSMFLDTCCTIIPNNTAPDGSVSRALEGLKELSNEMKASSGIENAVSK
WLSDMFGEWKGVIIAMLTSMGIFLGILVTCGCCCIPCIRSLINRLIITAIEKKENPPPYQMPLLAAAEGDDVMEEVEELL
DMV
>SFV1-4_Gav_gag#LTR/ERV4 21-1906 via tfasty with SFV1-20_Gav_gag, 2 frameshifts. [Crocodylidae]
MGGELESELIQNCPWRSGSRPTNDPDDLWAHIVFHQAANPAAAMINGYLSLRGANGKEWAVRLNASAFGCVMRDPRAVYR
PREETGSVSLARVKPSGAASSSPAQEFARCVRYMKEGGEDTPPDKFNCPSLTLGSRGHELLTQLRENLENNGRKTKWTGL
KWKKGKMINVLFREYAVLLRENADLAVQLEAATRAAAENLAAPPLQDGAGREESAPKSAPTQTPPTWSPPPATAPPSTSP
SPPPYVKQRHLEDVKVKETTETESNTRTNTEESESTSLQAMQQLFPESATALPISVQKRVTGPQGQGTQITITTRTRTRA
EMNELRKETGIKPDETPIVWLGRLIAEAGNEILDQDEALQLVRNTAWSKGKVVDPVPVLANYYWPIPLPALVVEALQRKV
HTWHEGATNHANAGALVYAVLGASYASWNPTQQALNLTPAQAQGAWPHRFATNPGDVPCLLEAIEAATEMYGGSQNLTAR
LLLNPSVNGPVAHVLGQLGKLQGAMKPKAQKTAYPAIDKEQNTASVYPTKYIPTRPRWTNQRSQVRNYPRLPARNSPPQA
RNSPPQRTPMERAMFGFLLGRSGLTKEQLRSIGDERQKALAKALGFDENNKKQKNSDCRRCQHGDRRR
>SFV1-5_Gav_gag#LTR/ERV4 33-1986 via tfasty with SFV1-3_Crp_gag, 1 frameshift. [Crocodylidae]
MESELIRHCPWRTGDRDCANSNDLWAHIAYHQADGLANPLITGYVSLAGDKGGKEWAIQLAPSSFGCVMSQNGVTFRPRD
EVGNLSLARVKPDSAVNPTPAQEFARCIRHAREGGEGTPPDKFNCPNLPPDSRAHELLTQLRETLESEGRTVTKWTGPKW
NKGKMINVLFRTVSILLREVANFDSQLSTASKTAEDLAVKCSAPSTPKDSAEQKQRSQLEDAATQTETLTPEIGAEQRKE
PPPANGADGNKARPEISAEPKKRLYPSLEGLTANNETSPNKATPTSWPGHPPVTAPLTKGNLTSPDVITPTPWPDHPPAP
PVLATAPPPPYPEEPGSTLLVKSGSEANEKELTTSALPISVQKFTMTGAGPPQASLTIRPRTRAELSDLRKETGIQPEET
PIVWMGRLVIEAANETVDLDEAMHLVRNTAWSRGIVTDPLSVTANQQWPITLPALVVEAIIRKTHVWHDGGSKQPNAVHL
IHAVIGASYAQWNPVLDPLGLTAQQQAQAWPHRYLDNPGLVPCLHQAVEAASEVYGGPQKLTVKLVLNPSINTPVTNIWG
LVSQLQSAMTSSSTQSHVTAYPIQAPPEKTSRRGPPRTTPPQRSAEERAMFGFLLNHTKLNKAQLRALGDEGQKLLAEQL
GFKYNEQPKNE
>SFV1-5_AMi_pol#LTR/ERV4 1808-4871 via tfasty with SFV1-10_AMi_pol, 1 frameshift and 1 stopcodon. [Crocodylidae]
VMAVGSAGGLLQLKPDPTDPRPYAELTVYNPTDPDDQQQVFFLLDTGAQVNVITSTIPHQKTTKTIKVQGLNAIAVTTKV
KFLVQGHRYPLEAVLGGINILGIPGIKALDLKEQVLQALPIIIPEQDWHRPTLRNTSTWRYRPIPTKGPLKKSLTDLLRR
LEQRGCIKTVTASTYLSPGWGVAKPGKPNEARLVVDYREVNKRCQVLQQPNPSTLPQCMFEMAQFQQSKWVGVTLDLKNM
FFSIPITDPEGILNMCIDGTMYRWTVCPQGYRNAPSLATGAMNNTLKNFQASHSLPPEEELRIWSYVDDIAIMGRDSSVV
TSIVNQLVAHLQSEGWTINEEKSCLHPVDDITFLGTRYIGSIRHGISHDGPNIDPLKTFLPVTKRHFQQLLGHLNWYRHY
VEPSDLALLTKLQRQIRDKSRKSTPWTKGDQRNLLRLLATVKNTQLHAIDLGESLTVTLGFTTNHVWAVVHNPRDELVYT
AHKTLQAAQHRYGAVGKILLAEQLVEPLARGHGTLRAPGATLLPLLDAEKVDPHFQGEPKTWNTLVLTHHYNWHCWKLED
TTPNPSPEDEEKVPTLYGTSAPAWMASDGTSRHGGGYGYYCKACHDKEIFQAYPDDNSAQKCELLGFLKVLEHCLTHHND
TLPVPIIAIDSQYIYKILTGTALPTENLNDWQDIWKTLTKFARLPLVRHTKSHRPDTDPVHEVIDKLLEDPLRTDIVLPI
TSTSGPEVNPFLAWLHENWGHPGPRACHQRWCxTITEPASYGVRRDWEKVAQACEICAKEKCHRTKHQLGAFDSSQFQAG
KVWQVDLLGPLPGSKPPNKGLVVVDLGTRQLQVIPLRKSNATAVISALTAVFATWQPPHEIQSDGGPPFNSNALDKFARL
HNVAWHLHLPYHPQSNGVVERHIGLYKEQLRLRGGGTFKNWTKFNHDVLISLNTAKPLWDEANVKKPLPWEPKFQPDELV
WISIPHPHQSHPQVHKGTVQRSGQYPNTYSVQLEEKPDRPPIIVHHNWMTRRSDVHPVSLQ
>TguERV7_gag#LTR/ERV1 798-2443 via tfasty with TguERV6_gag, 1 frameshift and 1 stopcodon. [Estrildidae]
MGQKNSKVQGGPQGKNSKPGKGKHLEAGKGKHSKTRKGKKDEFPEIPRESPLGWMLEHWEDLSVRRKRFKSKMIHYCVEV
WGNMEIGKYQYWPVFGTFESKLCQALSDHLYEEEEWGDEELDYARLWEYARVQLFPINTSGSKSKLGQNLGTPRKPAPPH
KVPPAQAWVPAAPPSAPPDQSAPPPNTQVSDAGAPGPSQPPPPPSTQPGETHTRACHTGESXSPPASRTRQKTRKGNTGD
SDDERDRPNLYPLRGVPTAPGIIGFVNIPINTGDVRAFKKETGKLMDDPLGVAERLDEFLGDSIYSYDDISAILRSLFNT
EERDMIRQAAIKDWEFRNPQGGGGAEKWPEQSPSWNAQVEADREKMIRLRNMVIQGIxGAVPRGQNISKALGECQAKDET
PTDWLERLRKSLQMYSGTDPESPVGAVLLKTQFVTKSWEDIRRKLRKKIDNWQEKSLQELLREAQKVYMRRDEEKQKTQA
RVLVAAVREAQAQTAGSSAPARGPQGKPAHTQKKNKQVSAPECFYCKKKGHLKRDCKKRIKDEKVFQEE
>RNNICER3_pol#LTR/ERV1 2059-5685 RNNICER2 very close [Rattus]
MKIREVRARSPPPEPRITLEVGGQPVTFLVDTGAQHSVLTQAPGQLSDRTAWVQGATGSKRYRWTTDRRVQLATGKVTHS
FLHVPDCPYPLLGRDLLTKLKAQIHFEEGGTRVTGPRGTPLQILTLQLEDEYRLYEPEQDKPKSLEIDSWVTKFPLAWAE
TGGMGLALQQPPLIIQLKATATPVSIKQYPMSWEAYQGIKPHIRRLLDQGILVPCRSPWNTPLLPVKKPGTGDYRPVQDL
REVNKRVEDIHPTVPNPYNLLSTLPPTHTWYTVLDLKDAFFCLRLSPESQPLFAFEWKDSEMGLSGQLTWTRLPQGFKNS
PTLFDEALHRDLADFRVQHPTLILLQFVDDLLLGATSETACHQGTESLLQTLGRLGYRASARKAQICQTQVTYLGYQLRD
GQRWLTPARKQTVANIPAPRNGRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKQGVLFQWGAEQQEAFDNIKRALLSSP
ALGLPDITKPFELFVDEKQGYAKGVLTQRLGPWKRPVAYLSKKLDPVASGWPPCLRMVAAIAVLTKDAGKLTLGQPLTIL
APHAVEALIKQPPDRWLSNSRMTHYQALLLDAERVQFGPVVALNPATLLPLPEEAEQHDCLQILAEVHGTRPDLSDRPLQ
DADHTWYTDGSSYLVNGERKAGAAVTTEDKVIWASALPVGTSAQRAELIALTQALKMAEGKRLNVYTDSRYAFATAHIHG
EIYRRRGLLTSEGKDIKNKTEILALLAALFLPKRLSIIHCPGHQKGHSPEARGNRLADVSAREAAMGTQVLSLKDQDQPT
SPQPEQTGWLYTTEDTKLLQKMGAVWCPQLKRWVYTGKTVMPTKMTFELISYLHKLTHLGLKKMKTLLRREEIDTYLLGR
DQALREVTESCRACAQVNPGKAKIGQGVRPRGHRPGTHWEIDFTEIKPGMYGHKYLLVFIDTFSGWVEAFPTKHETAKVV
TKKLLEEIFPRYGMPQVLGSDNGPAFVSQVSQLVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLSKLTLATGSKDWV
SLLPLVLYRARNTPGSHGLTPFEIVYGTPPPFINFFDSNIAEFANSPSLAAHLQALQIVQRDIWKPLAAAYQDRLEQPTV
PHPFQIGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIHASHAKAARPEETADHNIAPQTWKAQRTQNPLK
LRFSRCCS
>REV-A_pol#LTR/ERV1 gi|71980394|gb|AAZ57418.1| polymerase [Reticuloendotheliosis virus]
GRQGSPALREPRLKVKVGGQVIDFLVDTGATHSVVQKPVGPMSKESVAIIGATGNIRNYPKSEGRLVDLGRGLVTHSFLV
IPECPDPLLGRDLLQKLRATISFTGEGPPEIRTEGKLLVTAPLEEEYRLFLEAPIQNVTLLEQWKREIPKVWAEINPPGL
ASTQAPIHVQLLSTALPVRVRQYPITLEARRSLRETIRKFRAAGILRPVHSPWNTPLLPVRKPGTSEYRMVQDLREVNKR
VETIHPTVPNPYTLLSLLPPDRTWYSVLDLKDAFFCIPLAPKSQLIFAFEWTDAEEGESGQLTWTRLPQGFKNSPTLFDE
ALNRDLQGFRLDHPSVSLLQYVDDLLIAADTQAACLSATRDLLMTLAELGYRVSGKKAQLCQEEVTYLGFKIHKGSRTLS
NSRTQAILQIPVPKTKRQVREFLGTIGYCRLWIPGFAELAQPLYAATRGGNDPLEWGEKEEEAFQSLKLALTQPPALALP
SLDKPFQLFIEETGGAAKGVLTQALGPWKRPVAYLSKRLDPVAAGWPRCLRAIAAAALLTREASKLTFGQDIEITSSHNL
ESLLRSPPDRWLTNARITQYQVLLLDPPRVRFKQTAALNPATLLPETDDTLPIHHCLDTLDSLTSTRPDLTDQPLAQAEA
TLFTDGSSYIPHGKRYAGAAVVTLDSVIWAEPLPIGTSAQKAELIALTKALEWSKDKSVNIYTDSRYAFATLHVHGMIYK
ERGLLTAGGKAIKNAPEILALLTAVWLPKRVAVMHCRGHQKDDAPTSAGNRRADEVAREVAIRPLSIQATVFDAPDMPDT
ETPQYSHIEEALGHRLRGTKDPAGWWHLPDGRLLLPRAVGRKVLEQTHKATHLGESKLTELVRKHYLICGIYRAARDITT
RCVACAQVNPGATPVEKGLNSRIRGAAPGEHWEVDFTEMVTAKGGYKYLLVLVDTFSGWVEEYPARRETSQVVVKHLIHD
IIPRFGLPVQIGSDNGPAFVAKVTQQLCEALNVSWKLHCAYRPQSSGQVERMNRTLKETIAKLKIETGGDWLSLLPQALL
RARCTPGREGLSPFEILYGLKPPAVPRVGCDKLASITNQTLLKSLQALQATRSLARAALRDQLPQKEAQQDRTPLFQPGD
LVFVKKHDFQQLGPRWDGPYTVVLSTPTAVKVAGKTPWIHHSRLKKAPDNQEEWTVSPTSDPLRVKLTRRAKS
>RodERV21_gag#LTR/ERV1 699-2228 via tfasty with HERVFH19_gag, 2 frameshifts and 1 stopcodon. [Rodentia]
MGTVSSVPSHSPLGCLLENLQPLHLAPDLKGPKFIHFCNQIWPQYPLDNQSKWPPNGTLDPNIIRDLYKYCERSGKWKEI
PHSYVQAFSYLRSKPSLCSPTQLLLAMKPEPDDSSTIFDXANEPPPYRPQPTAPLPXSLLSPFLPLQQQAAQINSPRHPL
SAHRQPLLCYSRSAIGPPLPPRTRPNPAXVLPLREVAGVDGLGYMLHVPSIKRTLLEKRXGSYTANSSTFIKEFQYITQS
YNLTFHDVYMILTNNLLPEERRRVWXQARAHADEIHQTNAAHPVGAEAVPDQDPEWNYNXPGGILARDQFITCLLAGLRK
AALKAVNYEKIQEVIQDKHENPSQFLDRLTKALLQYTNLDPETPDGKQLLMTYFFQSFPDIRAKLKRLERGPLTPQAEVL
AVAFKVYHGRDEKAxKQKYLMLAKAFQPAIATAQAPSPPKAREPPGPCFKCGQEGHWARACXNPRKPPXPCPRCHQEGHW
XVDCPHVPHGMGTSSPDRPPADLLGLAMDD
>TguERV3_env#LTR/ERV1 7002-9152 [Estrildidae]
TETEIYPDKMNVSWWVGIFAEXLFTTIAVXQXLEGXPSQSNAEWPWSQAFTQYTGSMGKTSDLEGLNLTTLVMRSDQIYX
XQEWQKQGLWSLQGTIGEVIEIGCRMINGTTHSKATQISVNXRREICNRPSELDCWRXFKLGQAXXVVCLWARDTIGLSF
KFMISAIAKPATTXPSTQAQTQNTPSXLEPRVYEIGPYVIRNTGXQKLLFNPEWSLKRVELLMQTNISTVQPACSPFLRS
SFEGWTKWLQKRVHLXDRMRRDLTGMLGTGLGVLNGIDSEILMNKLAVATSDLTKLKQPLQSSLLALGNSQWQVSRVLPR
WRXXEDXDHSLLVDALGGAQXNISLALSCIQAQLWIQSTAALIIREGSEGVFPAEVRKVVWDSATDFERDLQSWWTMVNF
TYDPTTXTATAFVLTVRNATVHTIHPIVALGLSHEKSVLYPSEHRAWAWKXQGKWQTVNLEPCIAREQQGFICESNLISA
QDVCLDTDQGICHFEIHPDNNQQTVLVYIGDGCVCLRTVCDVIEIDRNKVPLSVKNHSNFCICNFIKVTGCDFVYSAPVV
SHQLXKSNYTTYDELPPTXIGMNLTLVKQLMKHQDLIKIVEEVHKNGQRTLVTVHHDVXEINRVLQRVKQDGSHNWWDAL
FGWSPTATGIMNTLCHPIIVLLILVTISXMMSILTLVWNWSMLKRVAILTSLSRTHGILLKENCHDGKSEFRSGPL
>TguERV1_gag#LTR/ERV1 2331-4049 [Estrildidae]
MGANESKEIPRGTPLGCILTHWKALVGYGGSETKRELVKFSTQWWPLYRLDGGLKWPANGTLDYETLLQLMLFLRREQKW
QEVTYADMFFSLRNHPEWQRDCGIRPPSDPLVLALEKDNKANKEKLKRCCSTCSINQRCSHPSKVYATEILEQGTAEALL
PPPRNQEGRGVEERVGERVKSEPSPTSASPNLSSGSSTLEKTVIKARVSPPTPRSGEPSRFYPPLPSSDSEWDESEPSPK
PSPQGPIASRTRRQTRMNPPPQTTRKQTKGVIQAPLRQAIASDGEPRIIKVPFFSMDLEAWEKTAKGYRNDPIGVAKRLK
FMVKQHLPDWADMQLLLDALTETEKQLVLKVSKDLAEDACVSTQEDIKDVFPLQDPMWDPNEPDELAQLKRYQDFIVKGL
ERAIPKTINWSALYAVKQGPSQTPSDFLDHLRDAMRRYTTLDPGSEEGIQQLINLFLGQSTGDIRRKLQKIRGPNSRDLE
TLLDEAWRVFSNREEGYKQGMKKLVAVARGEGKEKCEQDPPRQGPPRLGKDQCAFCRKFGHWKNQCPERRRGDEQRKSDR
GGERVVAHAKED
>WEHV1_pol#LTR/Foamy gi|2343269|gb|AAC59310.1| pol polyprotein [Walleye epidermal hyperplasia virus type 1]
SVGCQGAQVCTNREAEILVKVNNTIIPMLVDTGACLTAIGGSAPIVPKLKLTDTTAYAVGISSDPVEHIKTEQVKVKVKD
ASCNIEPWFNKDQTFHILGRDTLTKMRAMIAFLPCGRMEVVFPARYHQNVITDGAEAKWSLQQFPESLWASSPTDIGKMK
ITPIHIEVLPVPCPSIRQYPLPKEKVEGLRPMIHSLLAQGVLTECHSSCNTPIFPIKKPGREEYRMIHDLRAINEIVAPL
TAVVASPTTVLANLSPDMTCFTVIDLSNAFFSVPIHPDSQYLFAFTFEGRQYTWTVLPQGFIHSPTLFSQALFSSLSKIK
DSLTSEICIYMDDVLIASKDEETNYKDTATMLHHLADEGHKVSKKKLQLCKSEVVYLGQLISKAGRDILPERKKTVSQFA
APTTVRQVRAFLGLAGYCRHWIADYSENSKHLEELLKKEVIEPFTLTGEQLRAFEQLKSTLLSAPVLAIPDYRKDFELYT
SHTDHVAVAVLAQKQAGRTRPIAFLSAKLDAIEQGLPPCLRACASIHKNLTQADSFLLGRPVKIYTTHSICTLLQRDRSQ
LVTASRFSKWEADLLRPELTFVTCTAVSPAHLLATATSGDPPHDCVLLTHTMSRPRSDLSDVPLEKPELILFTDGSYSKG
EGGCAVVQYAPEKDTFLTVAACTGFTSAQTAELAAITLACQYAEDKSVNIYTDSRYAFGVLHDFGHLWQHRGFVTSAGTP
IKNHEMIQKLLEAVQLPSKISLMKCPAHTKGVTLEIRGNAAADEAAKKAVSMRQGVLKEDALEETMPSLSMCYDLIDEKY
CEDRPQGQGVFWHEDLIIPPVAMLPSIMRAIHGVSHTHKGGMMAYFKKLWFHPLAAQAIDEVIAGCVVCLKHNPKYRKRK
DKQGHRPLPGRPFSHLQVDFVHMSDKKPMYALVIVDVLSKWPEVFSCNKEDATTVCDILMTDILPRWGLPDQIDSDQGTH
FTSKITQQLANSIGVAWKLHCPGHPQSSGMVERLNRTIKTKIEKVKTHLQIDAWHKALPYVLMELRAIPKKNYLSPYEIV
MGRPMKLDTLSNVSPLWASDTLVTYMNKLTHALSEYHTQVANQWPTSVLPPGPEPGTWCMIKSFTKKPTVWEGPHLILLS
TPTAVKVEGKPTWVHLDFCKLLPSSFSSPRDEPEQGSTPNTTALERKPHTPSPRPSSSDSAPSPGCTMPRRSTRLYNKKK
>HFV_env#LTR/Foamy gi|9629130|ref|NP_044281.1| env polyprotein [Human foamy virus]
MAPPMTLQQWIIWKKMNKAHEALQNTTTVTEQQKEQIILDIQNEEVQPTRRDKFRYLLYTCCATSSRVLAWMFLVCILLI
IVLVSCFVTISRIQWNKDIQVLGPVIDWNVTQRAVYQPLQTRRIARSLRMQHPVPKYVEVNMTSIPQGVYYEPHPEPIVV
KERVLGLSQILMINSENIANNANLTQEVKKLLTEMVNEEMQSLSDVMIDFEIPLGDPRDQEQYIHRKCYQEFANCYLVKY
KEPKPWPKEGLIADQCPLPGYHAGLTYNRQSIWDYYIKVESIRPANWTTKSKYGQARLGSFYIPSSLRQINVSHVLFCSD
QLYSKWYNIENTIEQNERFLLNKLNNLTSGTSVLKKRALPKDWSSQGKNALFREINVLDICSKPESVILLNTSYYSFSLW
EGDCNFTKDMISQLVPECDGFYNNSKWMHMHPYACRFWRSKNEKEETKCRDGETKRCLYYPLWDSPESTYDFGYLAYQKN
FPSPICIEQQKIRDQDYEVYSLYQERKIASKAYGIDTVLFSLKNFLNYTGTPVNEMPNARAFVGLIDPKFPPSYPNVTRE
HYTSCNNRKRRSVDNNYAKLRSMGYALTGAVQTLSQISDINDENLQQGIYLLRDHVITLMEATLHDISVMEGMFAVQHLH
THLNHLKTMLLERRIDWTYMSSTWLQQQLQKSDDEMKVIKRIARSLVYYVKQTHSSPTATAWEIGLYYELVIPKHIYLNN
WNVVNIGHLVKSAGQLTHVTIAHPYEIINKECVETIYLHLEDCTRQDYVICDVVKIVQPCGNSSDTSDCPVWAEAVKEPF
VQVNPLKNGSYLVLASSTDCQIPPYVPSIVTVNETTSCFGLDFKRPLVAEERLSFEPRLPNLQLRLPHLVGIIAKIKGIK
IEVTSSGESIKEQIERAKAELLRLDIHEGDTPAWIQQLAAATKDVWPAAASALQGIGNFLSGTAQGIFGTAFSLLGYLKP
ILIGVGVILLVILIFKIVSWIPTKKKNQ
>AAY99339_pol#LTR/Gypsy  gi|68685649|gb|AAY99339.1| pol-polyprotein [Silene latifolia]
MGVIQVVTGGDENRGSTNGHKRHLNELYQAINFVPTTAIPASTVPDITIGRKDYEGVVAPHSDPLVVHLDISNHLVKRCL
IDTGAYTNIMFRECFLNLGLKIEDLSPCTNPLYSFSGAGLVPLGSIRLPVMFGQTDAAKNVLSEFVVIDGSSAYNVLIGR
VTLSEADAVMSIRALTLMYVSDQGEVQKLVSKDERDEVVNVQISARGCNMQSLKVAKKSEKGKSPSLRQEGDPMSTNNVS
MVEGAETEQVEIDPGRTVTVGVGLEPKFRADLLDLLRKNKDVFAYSAAEMPGVSREVIVHKLNVLSNARPVKQKMRNSSA
EKDDAIKAEVDKLLEAGFIMPCTYPEWLANVVMVKKSSGGWRMCVDFTNLNKACPKDCYPLPRIDSLIDATASYTMLSLL
DAFSGYHQVFMAEEDVLKCAFITIHGTYMYKMMSFGLKNAGATYTRLVDKVFQDQKGRNIEAYVDDAIVKSKSDSEHLAD
LSETFCSLRKYKMKLNPMKCNFGVRAGKFLGVLVSARGIDANPEKVQAILDLLEPRNRKEVMMLTGRMAALARFISRSTD
KSTPFFKVLKGNKDFSWGEEQSTAFRQLKAHLITLPTLSRPMLGETLYLYIAVTSATVSAVIIREEDKQQHPIYFISHTL
LAAETNYPLIEKAAFAVVVAARKLKPYFNAHPVTVLTDQPLEKALENFEKSGRLIKWAVELSGFGIQYKPRPSIKGQALA
DFLAECTYQEEPNPGVWEVYTDGSSTTNSSGAGILIISPNGDEFEYALKFTFSASNNESEYEAVITGVELARAAGAEHIV
LKTDSLLVTNQIRGEYEARDDGMVRYLERVKADTAKLKSFQIQCIPRSENNRADTLSKLTSSTIKNVSRTVLVDIRNAKS
ITETVGMVGDIEAETTWMTPIMKYKLTKGLPEDRSLSQKIKRIAARYLVFEGELYRRSVIRPLLKCVGPADAGLILTEIH
DGICGHHMGARTLADKALRAGYFWPTMLEDSRAKTKKCKNCQMHAPVIHAPSRDLQPVLSPLPFAQWGMDLLGPFPTASG
GRKYLIVAVDYFTKWVEAVAVPAKTTAAVRKVIWENIITRFGLPQVMVFDHGREFWSDMVMNWLEELGIKFAYSSVCHPQ
SNGQAEAANKTILNGLKKKVEDLKGRWADELPGVLWSLRTTEKEATGYSPFHLVYGSEAVLPIEAVVPTFRTATFNPVEN
EEGLKASLDLVEESRDTARLNLAVYQNRMRRAYNHRVHKRDLRVGDLVLRKSTATNKGNIHGKMTTNWEGPYKVVEEMRP
GTYRLTDMEGVPLMSHWNTDNLRKYFI
>AFLAV_gag#LTR/Gypsy 57-1063 via tfasty with TCN1_gag, 1 frameshift. [Aspergillus flavus]
MSSQSSSSKKTPVKSTPPAETDSESETTVKEQLKQMKSMITQLVNNAKEKNQEIENLKVQLGEAERIRNEQQDHIAQLDA
QVGASAPKDAIGKVKLPKAEPFDGTRSKLQAFLTQMNMHIHANRKNLIDEADKVIFISTHLRGAAWNWFEPYIREYYEVV
PDNWSNTTRELFTDSGNLRKHLERTFGDVDAEAVAERKLKHLYQRGSASTYAAEFQQIISRMDWNEKVYVSTFISGLKDD
VKDEFARIDRPATLNEAIDFAVKVDNRYHERLMEKRDNEAWRKGSHRPKGQYKSNDQRERTGVKHNDPYGPKPMELDATE
GQGQSKGISQKERERR
>ACCORD2_pol#LTR/Gypsy 3352-6757 tfasty with ACCORD_pol#LTR/Gypsy 1998-5540 [Drosophila fruit fly genus]
MVSNPLKFLIDTGSTHSFINPALINEDTTKKLTSDINIHTVLNKFKIREYTDKINFKQFEKIPNFKFLLFDFHSHFNGLL
GMDILSSLNAKINLAESILETPETAIPILTRANPVDTVYNLPQNTKMLLPLPVNLMEGDFIYETTNLDNQVSITGGLNTA
NAGSAYFEVCNNSDQIQTLYLEEPLQAEEFSSQTHQYLNCMTAATDTERQDDQQLNILTEHLNSEEKQYILKLCKSFKRL
FHNENNQLTFSNAIKHSIPTTDNIPIHTKSYRYPFVHKDEVRKQISKMLEQNIIKNSHSPWSAPVWVVPKKSDNIGEKKW
RLVIDFRKLNEKTVSDRYPIPNIADILDSIGKTMYFTTIDLASGFHQIQMNPRDASKTAFTVENGHYEFTRMPFGLKNAP
ATFQRVMDNVLGDLVGNVCLVYLDDIIVFSPSLQKHIADIKSVFTKLQNANLKIQPSKCSFLRKEIDFLGHIVTQEGVKP
NPLKIQTIxDFPCPKTTREIKSFLGLLGYYRKFIKDFAKITKPITRQLKGKKFIIIDDEFRQAFETSKDLLCNDPILIYP
DFNKPFTLTTDASNYAIGSVLSQGPDTNDRPISFSSRTLSNTEIRYSTIEKEMLAIIWSVRHFRLHLFGRRFKIVTDHKP
LIWLENLKGQNPKLLRWKTILAAYDYEVVYQKGSQNVVADALSRIEPNLNINEDPRIIPIVSQPLNHFNCQIIFCTGSTT
LREVETPFIHKVRHIITEPVHTFDSVTNTLQAIMKPNKTVAIFAPDDIFKIIEESYNNYFFENDLYKIVRCNIWLTEITN
PNDQENEIRAYHLNTNHRGIDETYNHLKRDIYFPHLKDTITKIIKNCDTCLTLKYDRHPHRPLMQDPTAPEGPLAVVHID
IYFINxNTCNLTIIDKFTKLAQAYPLSNRNSIKVADALLQFISHYGAPKKIIFDQGAEFSGSLFNDLLTQFQITAHTTSF
QQSTGNASVEGLHSTLTELYRIILNKRKEARLEREHVQILAEAVATYNNAIHSSTSYTPFELFHGRTHIFNKTIIIDNHH
DxIKKLNEFRKDIYPKGQEHLSATAERRLAKLNKDREKPVQVEPNDTIFRKENRRNKITPKFSLHKVDRDKGVTFLTTKG
QKLHKQKIRKRVKKTV
>EFV_pol#LTR/Foamy gi|9634979|ref|NP_054716.1| Pol [Equine foamy virus]
MQALQPLQVQIKGNSLKGFYDTGAEITCVPAIFLIEEEPIGERTIQTIHGITKEKVYYLTFKIQGRKLAAEVIGTQLDYV
IIAPSDIPWYKKYELELTIKIDIQKQQEQLLHTTNLSSEGKKYLKDLFIKYDNLWQKWENQVGHRRITPHKIATGTLNPK
PQKQYRINPKAKADIQIVIDDLLKQGVLKQQTSPMNTPVYPVPKPDGRWRMVLDYRAVNKVTPAIATQNCHSASLLNTLY
RGQYKTTLDLANGFWAHPIQESDQWITSFTWNGKSYVWTTLPQGFLNSPALFTADVVDLLKDIPNVEVYVDDVYFSNDTE
EEHLKTMDLLFQKLQTAGYIVSLKKSKLGQHTVDFLGFQITQTGRGLTDSYKSKLLDITPPNTLKQLQSILGLLNFARNF
IPNYSELITPLYQLIPLAKGIYIPWETKHTAILQKIIKELNASENLEQRKPDVELIVKVHVSPTAGYIKFANKGSIKPIA
YHNVVFSKTELKFTITEKVMTTIHKALLKAFDLAMGQPIWVYSPIHSMTRIQKTPLTERKALSIRWLKWQTYFEDPRLIF
HYDDTLPDLQNLPQTTLGNEVDILPLSEYEVVFYTDGSSIKSPKKDKQHSAGMGIIAVRYQPQMNIIQEWSIPLGDHTAQ
FAEIAAFEFALKQAIRKMGPVLIVTDSDYVAKSYNQELDFWVSNGFVNNKKKPLKHVSKWKSIADCKKHKADIHVIHEPG
HQNDLQSPYAMGNNAADKLAVKASYTVFSVQTLPSLDAELHQLLDKQTPNPKGYPSKYEYTLRDGQVYVKRTDGEKIIPS
KDDRVKILELAHKGPGSGHLGKNTMYIKILNKYWWPNLIKDISKYIRTCTNCIITNTDNVPNKSYIVQEKTGLPFQKYYM
DYIGPLPPSDGYYHVLVIVDEGTGYTWLYPTKAQTANATVKALNHLTGTAIPKVLHSDQGSAFTSATLVAWAKDKGIQME
YSSPYHPQSSGKVERKNSEIKRLLTKLLVGRPTKWYPLIPTVQLALNNTPNAKIGKTPHQLMYGVDCNLPFQDLSTLDLT
REEQLAVLQEIRTALEQPAQHPTLPKWTPCPGLLVQERVNRPAQLRPKWKKPTPILKVLNPKTVVIAGPGGQERIVSIDN
LKKTPHHDTSNDSTRMDAVEVPTECQQDQRGHT
>GGERVL-C_gag#LTR/ERVL 15-1835 [Gallus]
MRAAMDLYFILRALYRGLRTIMFLGTYWFLFKFIMFSVGVAYTYSQLRALMEIPAWFLYIPANLTDNMMFGLVSRCSSQF
LMHVRDASLGTVLSVSLNVFSAIVFYIMWRKLSPKPENVEWQGIWRGLGKRLEAWGPPVSWDFTLEHLWDPEKLSEYLSK
GWCSSERSEEERLIWGLACAYRALYNTILERESFQTEIRTKGGSLQVKPDQSQEAPVSMSVAPVEGQKWKRVSSRLERKE
EAEEVEEDPGEGPSPKPPSPRKATEKXKRHGEESEEEGVTVTTIRRPLKMTEIQGSRKEFIRHPNETVVTWLLRCWDNGA
SSVSLDGNEARQLGNIAXDSAIDRGISRCLDGVATLWERMLLAVKERYPFKDDLEPEMRKWNTVEKGIQYLRETAVVEML
YDPTFVPNDPRQDHDPERVRSTPDIWRKLTRTAPERYASTLVVTFDRYEDXXRRPPVFELILTLQNFEQKLPPSHASISA
ISQVTERLDKVEKKQDGMLEELSLVINRDEPVAVSETPDEDQDDQKSLLKELIKLIKVSAIKGKRLPARANDSSKSMSRA
ALWSYLREHGEDMKKWHKKPTPALRARVRELQNRSTTTEIAPVTAGN
>GGERVL-A_gag#LTR/ERVL 317-2236 [Gallus]
MXFLNAHLITLLISLNALFVIVIISLSICIYXILRKPSPKPENTEWQGVWRGLGETLERWTSSVSWNFTPEHLKDPESLN
RYLRQGCCGSGRSEEAQMIWGLANAYRALFNTIPERERVSETERESLRAERDTLQSERDVLRTERDALQHAKFSLQTEXT
KIQSHRXXLXSELNTLIIEQDRLRAELESESIGTDQPDQPQEAPESMSVAPVRGRKTKRISTHLEQKKEEEEKVEEADTV
REEEERGPEERLQDPGEAPLSPGEGPSIRSRSPTPRRATRSPERVGGEQDIVTITDRSLKMNEIRGLRKDFSRHPNEPIV
TWLLRCWDNGANSVXLDSREARQLGGIARDSAIDRGISTCQNEAFTLWKRMLLAVKERYPFKDDLMPEKKKWTDMEKGIR
YLRECAVVEMLHGPTFIPDEPDQEHDPERVRCTPNMWRIFTKTAPERYASTFAAMYGRGERRPLINELINKLQDFELHLT
PLRACVSAITKVAEKLDRMESXQEDIIDELSTVLXADGSMVVSDTSDGDQDSQNSLLEGLIKLVSSQPASSNVSAIKRRR
PPARASDNSKTMSRXALWRYLRDHGEDMKKWHKKPTPALQARVKELQDRSTTKVNSSKKVIAPVAAGHGNSRKNDRGNK
>HERVL18_gag#LTR/ERVL 60-1485 via tfasty with CarERVR1_gag, 1 frameshift and 1 stopcodon. [Primates]
MWPQHGLWYPVAXVLLGWAPVETWAAVDGSPMSVEKALKQLEAQSTEKERAFAGRVGWAFLTVLREVHAQSLRDAAQVRD
LQAQXARLEAQIHSLEKXLGVRDLQAQTGRLEAQIHSLEXELEAAXSAGLGPSSWPETPTRSDTEEEEPPAAAHPVVRQK
VXHEQPLGPQGRAQGPPTMTEHTSYSAYTPTELRELGKQCRQRXGEPXPAWMLRLWDEGADSISCSASEMEKLASITTHP
SLRQRLQVSRQLAQGQGDHTLIEWLMAAIxTVWNDAGEIPETVSKWQSYTDLVQVIQEMGMRQAMFDLNTRGPDDERFTS
HMRDLVLGXAPPSAFGSLAAVLTPYVGRHIHEVTTAMAALREAEGHRRDRGVRAIKKGKXPPPQGATPWXKRGPQRVTRT
QMWIDLISAGVAREKIDRQPNEMLLTLWRQLSPEQQFRKMPKRGQNNAARPSPAQTLQLKDYLQTGGDMEPFLFD
>TguERVL-A_pol#LTR/ERVL 2133-5312 (TguERVL-B_pol 89% identical, 95% similar) [Taeniopygia guttata]
RGPASSQVEARENRVFWTVWIRWPGTSEPQRYKALVDTGAQCTLIPSRHVGAESVSIAGVTGGSQDFTVVEADVSLTGNE
WKKHPIVTGPEAPCILGIDYLRRGYFKDPKGLRWAFGIAAVATEGIQQLNTLPGLSENPTTVGLLKGEEQKVPVATSTVH
RRQYRTTRDAVVPIHKMIRELESQGVVSKTHSPFNSPIWPVRKSEGEWRLTVDYRALNEVTPPLSAAVPDMLELQYELES
KAAKWYATIDIANAFFSIPLAAECRPQFAFTWRGVQYTWNRLPQGWKHSPTICHGLIQTALEKGEAPEHLQYIDDIIVWG
NTAAEVFEKGEKIIRILLEAGFAIKKSKVKGPAREIQFLGVKWQDGRRQIPTDVINKITAMSPPTNKKETQAFLGAIGFW
RMHIPEYSQIVSPLYLVTRKKNDFRWGPEQQQAFAQIKQEIAHAVALGPVRTGPDVKNVLYSAAGNHGLSWSLWQKVPDE
TRGRPLGFWSRSYRGSEANYTPTEKEILAAYEGVQAASEVIGTEAQLLLAPRLPVLGWMFRGKVPSTHHATSATWSKWIA
LITQRAHIGKLNRPGILEVITNWPEGESFGVADEEEEPVTRAEEAPPYNQLPAEETRYALFTDGSCRIVGMNRKWKAAVW
SPTRRVAEATEGEGGSSQFAELKAVQLALDIAEREKWPKLYLYTDSWMVANALWGWLERWKEANWQRRGKPIWAAEEWKD
IATRVEKLPVKVRHVDAHVPRSRANEEQQNNQQVDQAAKIGVSKIDLDWEHKGELFLARWAHDASGHQGRDATYKWARDR
GVDLTMDSISQVIHDCETCATIKQAKRVKPLWYGGRWSKYKYGEAWQIDYITLPQTRQGKRYVLTMVEATTGWLETYPVS
HATARNTILGLEKQVLWRHGTPERIESDNGTHFKNSLINTWAREHGIEWVYHIPYHAPAAGKVERYNGLLKTTLKALGGG
SFKNWEQHLAKATWLVNSRGSTNRAGPAQSEPLNIVDGDKVPVAHVRGLLGKSVWINPASSTDKPIRGIVFAQGPGCTWW
IMQRDGTTRCVPQGDLIVG
>MST_gag#LTR/ERVL 48-1469 [Primates]
MWKRLWNWVTGRGWKSLEGSEEDRKMRESLELLRDLLNGCDQNADSDMDSKGQADEVSDGNEELIGNWSKGHSCYTLAKS
LAAFCPCPRDLWKFELESDDLGYLAEEISKQQSVQDVTWLLLTAYSHMREQRNHLKLEFIFKREAERKSLENLQPGHVIE
KKNPFSGEKFKQAAERPFAKEISITKRKPSADSQDNGKKASKAFQKSSRWSFPSQAQRPRRTEWFRGPGPGPRCPVQPRD
TAPCIPAAXAPAVAQRAPGTARAAASESASYKPWWLPHGVKPAGAQNARVKEAWQPPPRFQRMYGKSWVPRQKPAAGTEP
SQRTSTRAVPKGNVGLEPPHRVPTGALPSGAVGRGPLSSRPQNGRATGSVHRQPGKAAGIRLQPVRAATWAVPSKATGAE
LPKALGAHPSHQRALDARHGVKGDYFGALRFNDCPAGFRTCVGPVAPFFWPISPFWNGNIYPMPVPPLYLGSK
>ATGP2_pol#LTR/Gypsy 1557-5009 via tfasty with ATGP1I, 2 stopcodons.  [Arabidopsis]
MDCRLPKSGKPWHREFMSCRRKLTMPETSGRSLVRSHNSLFIISITAFALHHAYGKWEVLSILRECVGTLRVGDVVTHTL
FDSGATHCFVSPELVETGGFRKEPNTDYGMVRAAGGQAMYPTGLVRGISVVVNGVNMPADLIIVPLKKHDVILGMDWLGK
YKAHIDCHRGRIQFERDEGMLKFQGIRTTSRSLVISAIQAEKMLGKGCEAYLATITTKEVGASAxLKDILIVNEFSDVFA
AVSGVAPDRLDPFTIELEPGTTPISKAPYRMAPAEMAELKKQLEELLDKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYR
GLNKVTVKNKYPLPRIDELMDQHGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMM
NGVFRDFLDEFVIIFIDDILVYSKSWEAHQEHLRAVLERLREHELFAKLSKCSFWQRSVGFLGHVILDQGVSVDPEKIRS
MKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYT
VYTDASIVGLGCVLMQKGSVIAYASRQLWKHEKNYPTHDLEMAAVVFALKIWRSYLYGAKVQIYTDHKSLKYIFIQPELN
LRQRRWMELVADYDLDIAYHPGKANQVADALSRRRSEVEAERSQVDLVNMMGTLHVNALSKEVESLGLGAADQADLLSRI
RLAQERDEEIKGWALNNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMKK
DVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVERLTKSAHFMAISDKDGA
EIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSNFWKAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGN
WEKYLTLVEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEAHDRQKSYANK
RRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEE
SVEDVPPGLKENMTVEAWPVRIMDxMTKGTRGKSRDLLKVLWNCGGREEYTWETENKMKANFPEWFKEMGKDQLDADSRT
NPIQGGR
>CAREP1_pol#LTR/Gypsy 2-1966  [Cicer arietinum]
QLYANLSKCEFWLEKVNFLGHVITKEGIAVDPAKIEAVLAWKQPQTVTDIRSLVGLAGYYRRFIEGFAKIVAPLTQLTRK
DQPFAWTEKCEENFQLLKRKLTTSPVLVLPQSEEPHEVYCDASHQGLGCVLMQHKKVVAYASRQLKIHERNYPTHDLELA
AVVFALKIWRHYLYGCTFTVFSDHKSLKYLFDQKELNMRQRRWIETLKDFDFTLQYHPGKANVVADALSRRSVSVSSLIM
ARQQELWEAFRDLHLNVEFAPGILKFGMIKISSGLLEDIANSQDDVLIQEKRNLIVQGKTTEFKIGADNVLRCNGRICVP
EITAMRKTILEEAHKSKLSIHPGATKMYQDLRQNYWWPGMKKHVAEYVSTCLTCQKAKVEHQRPAGMLQPLDIPEWKWDS
ISMDFITGLPKTRRKNDSIWVIVDRLTKSAHFLPVRTTYKVDQLTEIYIAEIVRLHGVPSSIVSDRDPKFTSHFWGALHE
ALGTKLRLSSAYHPQTDGQTERTNQSLEDLLRACVLDDRGSWDHVLPLIEFTYNNSFHTSIGMAPYQALYGRKCQTPLCW
YKDGENMIVGPEMVQQTTAKVKKIKEKMKTSQDRQKSYADKRRRLLEFEQGDHVFLRVTPTTGVGRALKSKKLTPKFIGP
YQIYARIGPVAYRI
>Atlantys2_p2#LTR/Gypsy ReverseORF 7860-8837 R) Reverse strand product, three exons (?) (8837-7874, 7797-7130, 7061-6348) [Arabidopsis]
MSSSQSPSTPSASLVDSSDSNHPDDLPPIYKRRSVWTSSEEDAVSSSNAPEQTTPFTAREDTNADIARELDLPDDPEPPL
VRRSFAPMADEAGTSNWQDVPEPFMPTVKIEDFLYFGPNETEDILRLNEQKAFEKAEKKKRKKNKKVIMPDPPGSTLCTE
RSLSDLRARFGLGAVTLRVPSPDERADNPPAGFYTLYEGFFYGCFLWLPIPRLVLEYVTSYQIALSQITMRSLRHLLGIL
IRSYESETEITLAHLRNFLEIRRVPKSEVDRYYISPAKGKKIIDGFPSKDEPYTDHFFFVAIEDAVHEDLLGTVLTRWGI
LERTLKFLEPIPDDFLSAFHALSARKCDWLKHFSRERVERALRLLHGVSCPTSSESSDHRTQFFVDMQSTKLTLREVYAK
KKEDKERRLAEEKRLVDAGLISPRAAPEATQDGNVIPDAAAPVDAAPAEAQEAEPSAAAPEAVVALPASDKAAGKRVRVD
DESSKKKKKKKKTSGSEAEKVLPIFEDRIASANLLGGCVGPLLPPPDTLLESRKYAETASHFLRAVASMNRMVHSYDSAM
RSNMEVAGKLAEAESRIQAAEREKNEALSEAAAAKLEREEVERMAFVNKENAIKMAEQNLKANSEIVRLKRMLSEARGLR
DSEVARAIQTTRREVSETFIAKIKTAEHKVSLLDEVNDRFMYLSQARANAQLIEALEGGGVLEREKEQVDEWLKDFADAE
VNLNRFIAELKDELKAPAPEPAPLSPGGHRSVESLADEAGVTDQSGSLLPAEDNRPSEDLD
>CER5_CE#LTR/Gypsy 30-4322 via tfasty with CER4_CE and CER6_CE, 2 frameshifts.  [Caenorhabditis elegans]
MAEGKPTALSALEALTAQVAAQEQRSQQQFEAQAALTEQLINRLLAQPELPRQHAGGDVVAAPQSNARLMNDLKRSIQKF
QFNVAEPEAFKRKLTFVEDGKNLSERERTRLLLGCLEESTFHRYEDSQREISDIYSISFDDTVTALTKIFGSTKSLMMRR
QQCLQICRANGLSQDYLDYTNSISDAVLDSKLSSMTSDEWSIFLFLRGLNSPGDEKAKLYLMQYVEASEKKNEKLKLSDV
HDEWMKFIQMHQQSKIVSVKPSKSSQQVDVNKVDTNRSKKKKKPIPRKPEKSSQDSKKKGEIPTCFYCNKKGHYATNCRS
NPKTGNQGGNKGKSKGCDSVHVDGLDVKTEHQAKHRMSVEVCGKDVAFQLDTGSMITLISFKCWEKVGSPPLEKVPHRFS
CANGTPMAVKGRCLVKFKLKGIEYTEYVYVCDRQTNLLGTSWLNLCPQMRSALAQIVNQVSTSETEASRLEVMLKNDFPE
VFKDGLGLCTKEKAEFRTEENAVPVFKRARPVPYGSLEAVEKELDRLQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCA
DFKCSGLNAALKDEFHPLPTSEDIFSRLKGTVYSQIDLKDAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLKPAPASF
QKIMDKMVSGLTGVAVYLDDIIISASSIEEHEKILRELFERIKEYGFRVSAEKCAFAQKQVTFLGFIVDEHGRRPDPKKT
EVIRSMKAPTDQKQLASFLGAVSFYSRFVPKMSKLRGPLDSLMKRDVKWNWTDIHQEAFNTLKNAVADSTMLSHFNESWP
IIIAADASQYGIGGVLLHQTPEGHEVPVAHFARALTDTEKRYSQIEKEAVALVYTVKKAHKFIFGRKFLLQTDHKPLLAI
FGPKKDLPVHSQNRLVRWATTLMTYNFELSYVSTSKIFKADWLSRMMQDHQQNADDVVIAEIYDDDDDEDDSIIQKLNPV
TETDIRFESQKDHEVSSVIKLVRNDSWKPKPSTEIEKHWIRYRDRLKLIHDCLLLDDRVIVSKSLQQIVLKQLHEGHPGI
VQMKQKARAFVFWRGLDSDIEKMVRHCNNCQENSKMPRVVPLNPWPVPETPWKRIHIDFAGPLNGYYLLVVVDAKTKYAE
VKLTRSISAVTTIDLLEEIFSIHGYPETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFVDTLKRGIAK
IKGEGSVNQQILNKFLISYRNTPHSALNGSTPAECHFGRKIRTTMSLLMPTDRVLKVPKLTQYQQNMKHHYDLRNGARAK
AFQVNQKVYVQVHHGNKSQWKHGVIRRKFGGVLYEVQVGDRIQKSHVNQIRTRYGDYSREDIFEETIYPLFFSTPGKFTS
GSDNKSSSGATGGKLIFLILQARLLILDCLPILLVLWGRVAVMRCPAMMIQLLLRTVPVLMSIVEAESQVN
>CRM_OS#LTR/Gypsy 1256-5839 [Oryza sativa]
MAGPEDKDEEGASHSPRTKGIIQYFTRQVKQHTEGLDTDLQVTNEKIGQLESTQISTNTKLTGLETAVARIDTSLAALVR
HFDALNAGGNGGGNDDDIDGEYVEDNLEDEYIADTEQDDRDARDRRRLHNNRRGMGGRRRREVRNNDDAFSKIKFKIPPF
DGKYDPDAYLSWEIAVDQKFACHEFPENTRVRAATSEFTDFASVWWIEHGKKNPNNMPQTWDALKRVMRARFVPSYYARD
LLNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRR
ASAKANFSAGKTSSWQTRTTPPAGRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHRCKGFGH
VQRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEKAEQNQRHTLF
QTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPM
QACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHPMSPEDILRDDVAKAAKSKCESDKKAQSDGKKPETINLKPKC
LLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPN
RAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSG
SIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKS
MGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRR
FVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFS
EKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKEN
IIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEA
HGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKR
GRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHP
QTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAK
QRAELMLKLHETTKENIERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYK
IDLPADFG
>CFT1_pol#LTR/Gypsy 2555-6055 gi|6650019|gb|AAF21678.1|AF051915_2 pol polyprotein (trimmed N term) [Passalora fulva]
MSDRRELCNTEKAQASPTTTVFRTKIIVNGHKTDAMIDSGASGNFASESFVTRNRIATCKKKEGYELIAVDGSSLPSVER
ETIPLPLAIQRHHEEITLDVTDMASHDIVLGMPWLRKHNPVIDWRRGVLTFRECECVIDIQPAQWQRSLADEARKQLNRI
QLAPTRRTEEPPSTGTDTGVGPPGHEVTGSDGSNAPSKDTNISELSIPKEYRKWSRLFEEERGKDALPKHQPWDHKINIQ
PGKEPPWGPLYQMSEKELQTLREWLKEKLAKGWIRRSTSSAGTPCMFVPKANGKLRLVQDYRKLNEITIKNRYPLPNIEE
AQDRLTGSDWYTKIDLRDAFYAIRMAEGEEWKTAFRTRYGLYEFLVMPMGLTNAPASCQDLVNETLRDLLDVCVVAYMDD
ILVYTKGSLQEHTKQVQDVFERLTKSGFKTAPEKCEFHKKEVKFLGFIISTTGITIDPAKTQSIREWPEPKTVKDVQSFL
GLANYNRKFIKDYSKTAAPMTMLTRKDVNWKWGKEQTEAFKRLKEQCASAPTLRLFDGSKEVHIETDASDMAIGACLTQT
HDGKRHPVAYYSRKMTTAEQNYDIHDKELLAIVAAMQHWRVYVEGPPKLTILSDHKNLTYFTTTKELTRRQARWSELLGQ
YKFEIKYTPGTENGPADALSRRSDYMEGKEPVQHKILKTNPDGSLSANTREFNNIVRILSDKEEQFPISQGKYQVPKDRE
EECIRQHHDEPTYGHPGTSKTVDLIQRSFSFPQMRLKVLRYIKKCVHCQQNKAARHAKYGHLQFRTPPTKPWDEVTMDFI
TKLPRSKDRVTGQAYDMILVMVDRLTKYAHFIPASEIYTAEQLGYLVLDRLIRYHGFPEVFITDRDKLFTSNYWKTLMGT
IGIKHKLSTAYHPETDGQTERTNQTLEQYLRHYINYAQDNWVSLLPMAQIALNNHKSETTSTTPFYANFGKDPNLSGTPG
SHPQAERAIVTTETLKEVHKEARKAIEDAQQRLSQRRQDERKMAPLLKEGDKVYLLTKNLKTRRQTKKLDHVKVGPFFID
KVVGPVNYRLRLPPDAKIHPVFHISKLEPADAETPCQESFHFEPEAENEFEVEKILDKKGQRYLVKWKGYDESENTWEPR
INLANCYQLLRQFQKWRQDSRKQEAQERRASPDQTRSRPKYPHARTK
>ATHILA-7_SBi_gag#LTR/Gypsy 301-2307 [Sorghum bicolor]
MAEKTLREFSAPSTENIRVGPTFDLGEYDYEIKPSLIKMVQLIIFSGKKDEDAIAHLQNFLEIGNTIDIPGIPQDVVLLR
LFPFSLEGRAKQWFYQSKDQFKTWRECSKAFLEKFFPIGRTNILRGKISEFHQQKGEPIPEAWERFQGYISDCPHHGMEK
WLLMQTFYYGLTQRSCEQLDATAEGSFMSLTPRRAEAIMAKMAENQNWTFNTQTCHESEEVPEELCALSTKMDVLLSWLE
QRDNYKRNRQAIQDAFNSQDQHEEDISAITKKQGWSQPQATSQGKYQSDYNSNQRQPPLRELILEQARINESIYKKLAFN
DEMLEGINSKLDNFSLAVKEQIMFNKKIESQITHLASILSATNHEQIKGISTRGGKVTRDPPYPEGARRPSHSVQVDKEA
GENNKEKEVEVPSPPVDAQEPELMKDFHDTTLLPFPQRRRSTTTDERFSKFVDVIQKLYVNIPLLDAMQVPTYAKYLRAI
LNNKGPLPSTEVIKLTEACSEAILRSSPIKKKDPGCPTIDCSIGNQMFENALCDLGASVSVMPKTVFDKLDYSTLTPTTM
CLQLADQSVRYPAGIAENIPVKIRDFFVPVDFVVLDMQEERKIPLILGRPFLNTANATINVGAGEIIFTINGQEERFAFR
PRPEQCKTLKDQEDQDASTSPTAEINHKE
>ATGP5I#LTR/Gypsy 401-4796 via tfasty with ATGP6I, 1 frameshift and 4 stopcodons.  [Arabidopsis]
MAESEEEETSHNRNNKLLVEAFEKMMDTKLNAFRQEFHEKLELGQTRPRExRRVNEPLEQRDEATDQYYGHRSTSSHNSQ
RRHHRRAREGRDLLQDNLGGLKLKIPPFHGKNDPDAYLExEKKIELVFNLQHYTEINRVRVAATEFYDYALSWWDQLVTS
RRRNQELPLESWSEMKAIMRKRFVPSHYHRELHLKLRNLTQGNRSVEEYYKEMETLMLRADISEDREATLSRFLGDLNRD
IQDRLETQYYVQIEEMLHKAILFEQQVKRKSSSRSSYGSGTIAKPTYQREERTSSYHNKPIVSPRAESKPYAAVQDHKGK
AEISTSRVRDVRCYKCQGKGHYANECPNKRVMILLDNGEIEPEEEIPDSPSSLKENEELPAQGELLVARRTLSVQTKTDE
QEQRKNLFHTRCHVHGKVCSLIIDGGSCTNVASETMVKKLGLKVQKHAKPYDLxWLNDSGKMRVKNQVVVPIVIGKYEDE
ILCDVLPMEAGHILLGRPWQSDRKVMHDGFTNRHSFEFKGGKTILVSMTPHEVYQDQIHLKQKKEQVVKQPNFFAKSGEV
KSAYSSKQPMLLFVFKEALTSLTNFAPVLPSEMTSLLQDYKDVFPEDNPKGLPPIRGIEHQIDFVPGASLPNRPAYRTNP
VETKELQRQVDKLMEKGHIRESMSLCAVPILLVPKKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKID
LKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESLREHIEHL
DSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTI
VAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIECDASGIGIGAVLMQDQKLIAFFSEKLGGATL
NYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFAYVIKYKKGKDNVVADALSQ
RYTLLSTLNVKLMGFEQIKEVYETDHDFQEVYKACEKFASGRYFRQDKFLFYENRLCVPNCSLRDLFVREAHGGGLMGHF
GIAKTLEVMTEHFRWPHMKCDVKRICGRCNTCKQAKSKIQPNGLYTPLPIPKHPWNDISMDFVMGLPRTGKDSIFVVVDR
FSKMAHFIACHxTDDALHVANLFFKEIVRLHGMPRSIVSDRNTKFLSYFWKTLWFKLGTKLLFSTTCHPQTDGQTEVVNR
TLGTLLRALIKKNLKTWEECLPHIEFAYNHAMHSASKYSPFQIVYGFNPISPFDLIPLPLSERVSIDGKKKAELVQQIHE
NARRNIEEKTKLYAKQANKGRREQIFEVGDMVWIHLRKERFPAQRKSKLMPRIDGPFKIIKRINDNAYQLDLQGKYNVSS
SFNVSDLVPFIADEPDLRSNPFQEG
>ATGP5A_gag#LTR/Gypsy 244-1731  [Arabidopsis thaliana]
MADEEEGENSNKLMLVALTATMTKLLDARLEAFRQEHINSDPDRDRTRREPRDPVDDRDTMSYYSQSSRQTNHRRRRHDR
EERVLPRDDLAGLKIRIPSFKGTNDPDEYLEWEKKIELVFNCQQYTEESKVKVAPTEFQNYALSWWDQLVTTRRRAGDYP
IESWTQMKTIMRKRFVPSHYYRELHNRLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRFMGGLNRDIIDRLEVQ
HYVELEELLHKAIMFEKQLKRRSSKPSFGSGKPSYHKDERSGFQKDYKPFIKPKVEDQDQKGKGKAVMTRTRDIKGFKCQ
GHGHYASECSNKRIMIIKDTGEIESEDEQLEESSSTEDYEAPSKGELLVTMKALSVIAKTDEQEQRENLFHSSCMVNDKV
CSLIIDGGSCTNVASETMVEKLGLKVMKHPRPYKLQWLNEDGEMSVDRQVKVPLSIGKYEDEILCDILPMEASHILLGRP
WQSDRKVRLHQSPNL
>ATGP10_pol#LTR/Gypsy 1643-5212 via tfasty with ATGP2I, 5 frameshifts and 7 stopcodons.  [Arabidopsis]
LRCRTYQTFRTRKSSCNRLVWVLTFLIYACLSDxSLCAxFTRLNIAYIIFICIGTLLVSGNPTHVLFNLGATNSFVSSDV
ADKFGHGYEKREVNVLVHTAGNQPPLQTRVVLVGVPVVIQDTILQANLLGMPMERFEVIFGMDWLSGYHAHLDCRRSRVV
FELRNRPRLTYCGINPSKIASFVSALKVENLLWEGEVYLVTLTAIGGEVEGDSRIEEIPVVNEFEDVFKPLEGLPPPRNH
LFTINLEPGVTPITRAPYRMPPVELAELKKELEDLLEKRFIRPSSSPWGASILFVKKKDGSMRLCIDYRGLNNMTIRNKY
PLPRVDELLDQLRGASxFSKIDLASRYHQISILELDVMKTAFQTRYGQYEFVVMPFELTNAPPAFMRLMNEVLHDYLDSF
VIIFIDDILVYSRSAEEHREHQWKVLDRLREQRLFAKFSKCKFWQREIGFLGHRILGQGVTADPEKIAVIQQWSRPTSVT
EVRSFLGLAGYYRKFVKGFSSIVKPLTRLTGKGVPFIWSKEVEEAFVKLKKTLTTALILALLEPNKPYDTDASRVGLGCV
LMQEENMNAYASRxLRRHEENYPTHDLEIAAVVFALKAWRSYLFTLPDLNLRQRRWMELIADYDLEIQYHPGKANVVADA
LSCQKMKVNVGKDLESLTDELKKVNLLALEGESSEPLGLQAVTQANLLHRIREEQVQDEKLxKIAEELKTLDRPNASGYH
LADDGTLLLNGKITVPDRKGLRQEILRAAHTSLLSIHLGSTKMYKDIRKYYHWPGMKRSVAKCVSQCDSCQGVKVEHQVP
AGLLCNLPIPGWKWESISMDFITGLPTRPGRSNDAIWAVVDRxTKMAHLVSMKSANKSPILAEKYIDEILRLHGVPANIV
SDRDPKFSSIFWQDLQHALGTDVHMSKAFHPKIDGQTEKTITETIEDMIRLCALEWAGDWEDYIPLVEFSYNNNYHSSIG
MSPFEAMYGRPCRTPLCWTEVGERMSFNNRLINETAEKIQFIRDNMKKAQDRQKNYADRKRREVEFQEGDMVYLKVTALK
GKDRFGKVGKLAVRFIGPYKIEKRIGEVPYRLFMPEEMRVHKVFHVSQLRKHVPDPNAIIPEPIQELKTNLTFPEIPLRY
WxKKNAEIKNRRILQIQVFWGRQNRKVITWANEEKFLGQNIHSFSNHGMLRMKSDRLILLEFGTNSIKGGGRM
>Athila4C_env#LTR/Gypsy 5863-7362 [Arabidopsis]
MTGQKKKARKSVGPSSSSAVPHHRRRFSTAAGLRPSQPESQAAAPQPPIDRFPWPKLPKERIPSQRVWEKDVNREFTKGD
YINRPFSPDWDDYDTLFYNAWMSVEILPTRFADFGLMQRLQIEKSVLGLLDDIGLGTICCRQYDLYPELVKQFMASVRVS
YVNDRKRNAQEGALIFFIRGVRYSLPLRDLCDIYGFDNDLTGVSLPGQFKDSQIFWSRFGNGIYDSKDAVHSEIRHPVLR
YLVRLISSTLLCKMEPGKMRLSELLLLYHALHDFFPDSLGFEQVDRNVNFGAVFAHHLVSLKTKPFTGRGQKSERVGSLL
TPIFEHFRISFEGEEVNTTRVTMDETYLKNSHWLKGNLLWCFRDDTGQHMIQLPRPALTEITGEHEEIGFHPDPSLLHAA
PRTRRQRGSASGSAPTQTEDEFIDPAGGPRVGSSSSALPYQLPSPPPIPMEPQVFQQYVVDSFKSVWNAIATLSRCGCVA
PTRRRRRSPAPTSGSEHED
>Athila0_gagpol#LTR/Gypsy 145-5829 [Arabidopsis]
MQTRSKGSAHLLPFRDRIDRIARELQETKAKAACDQQRPAAMDQQNRPVDVQDPPNVDQPRNIGAGDAPRNHHQRQGIVP
PPVQNNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDSFDRLCGLTKINGVTEDMFKLRLFPFSLGDKAHHWEKTLPPDSI
TSWDDCKKAFLAKFFSNARTARLRNEISGFTQKNNETFCEAWERFKSYTTQCPHHGFKKASLLSTLYRGALPKIRMLLDT
ASNGNFLNKDVAEGWELVENLAQSDGCYNEDYDRSMRGTGGSEDKQSKDIKALNEKLDKLLLAQQKQIHYITDEEHFQMQ
EGGNDQTEELCYIQNQGGFNKGYNNYKPNPNLSYRSTNVANPQDQVYPPQQNQSKPFVQYNQGYVPKQQFNGGYQQQNPP
PGFTQQPQQAPAAQDPDTKRMLQQIIQGQTTGALVLEKRLAEINSKVDCSYNELRSKYEDLTSKMTYMERQAVSNTSSTY
TGPHPGKAIQNSKEYAHAVTLRSGRKLINNQPTEKITEDSEVQEGEDQHQNEVQTDEPIKLDQPSDSLDPLLDRAKPTFE
ERKAAAAEKNKEFAPPPFKPTMPFPRRFKKELIEKYKTLFDKQLKEIELRMPLMDAFMLIPHSHKYLKDLIMERTKEVQG
MVVIGHECSAIIQKNIIPRKLGDPGSFTLPCSVGPLSFSKCLCDLGASISLMPLSVARRLGFSKYKPCGIQLILADRSVR
IPHGVLEDLPVKVGSIDIPTDFVILEMDEEPKDPLILGRPFLATAGAIIDVKKGKIDLNLGKEMKMTFDINKAMKKPTIN
GQVFWIEEMDRLADELLEELTEGDHLASALTNDGEEGYLHLETQGYKEYLDAHIPMEGPEEFEELIVPSEEAVSGCTMSL
IAEKTNSTEMLDHGGENISSDDWSELKAPKVDLKPLPKGLRYAFLGPNDTYPVIINDGLSDEQVNQLLNELRKYRRAIGY
SLADIKGISPSLCTHRIHLENESYTSIEPQRRLNPNLKDVVKKEILKLLDADIIYPISDSTWVSPVHCVPKKGGMTVVKN
DLDELIPTRTITGHRMCIDYRKLNAATRKDHFPLPFIDQMLERLANHVYYCFLDGYSGFFQIAIHPNDQEKTTFTCPYGT
FAYKRMSFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFSVYGSSFSSCLLNLCRVLERCEETNLVLNWEKCHFMVQEG
IVLGHKISGKGIEVDKAKIDVMIQLQPPKTVKDIRSFLGHAGFYRRFIKDFSKIARPLTRLLCKETEFNFDEDCLKAFHL
IKEALVSAPIVQAPNWDHPFEIMCDASDYAVGAVLGQKIDGKLHVIYYASRTMDEAQTRYATTEKELLAVVFAFEKFRSY
LVGSKVKVYTDHAALRHIYAKKETKPRLLRWILLLQEFDMEIIDKKGVENGVADHLSRMRIEDSVPIDDTMPEEQLMFYD
LVNKSFDTKDMLEEAYAVEEEKLPWYADLVNYLVSGMIPQSLDAYKKKKFFRDIHHYYWDEPYLYKKGSDGLFRRCVSEG
EVQGILGHCHGSTYGGHFATFKTAQKILQAGLWWPTMFKDTQEFIAKCDPCQRVGNISRRNEMPQNPILEVEVFDVWGID
FMGPFNPPSYGNAYILVAVDYVSKWVEAIAAPTNDHKVVLKMFKSIIFPRYGIPKVVISDGGSHFINKVFEGLLRKHGVK
HKVATPYHPQTSGQVEVSNRQIKAILTKVVGVSRRDWSAKLDETLWAYRTAYKTPIGRTPFQMLYGKSCHLPVEVEYKAI
WATKLLNLEIKGAQEKRAVDLHELEEIRLEAYESSKIYKERTKAFHDKKISPKDFNIGDQVLLFNSRLKLFPGKLKSRWS
GPFTIKEVLPYGAITLTKEGSSEFTVNGQRVKRYMADCPIPEGTTVDLQEPINA
>RNERVK3_env#LTR/ERVK 5713-7782 (renamed to ERVB4_5_RN, but "new" consensus is poorer) [Rattus]
QIPGWRLRKMHVFFFRAMKFYWILLKLLFLTVLTSGTSSPYQIWNYTWVIINEAGDTAFTTSHTGPNPTWPQLTPDFCKL
AAGGNSYWGLADKYLPLIEAPHGSSFNERYVGCDTVHRRTNIRETDFYVCPGSHRDRSLNYKCGYRDQFYCASWGCETTG
DAYWKPTSSWDYITVKKGWHNSNRNSTLTQECRNTEPSKGWCNPLTITFTDAGKKITPENWHRGFEWGLRMYVANRDPGV
TFKIRLFKTTPNLHKASIGPNPQLHSQGSLPPRVVTQPPFNTSSPPTTLFQPTIPVGPMSPTSLILSVLNASALALVYHE
QETNTSIYEECWMCFSANPPFYEGIATFGNITYTNNTGGLSWNTIELTITEVSGIGSCLLGKNMLLPKQLLEICNHTIIV
DNQNTYLQAPKYTYLACSTGLTTYVITSQFLKTKDYCVLVQLFPRLSIHEPETFLKSWEKGSDMPHKVKREPVTAITLAV
LLGLGAAGAGTGIASLVTSHQYYNQLSEAIDKDIAELRDGLANLKDSVASLSEVVLQNRRGLDLIFLQQGGLCAALKEEC
CVYVDKTGLVEDSLKKVRDSLEKRRREREQQESWYQNWFSTSPWLSTLLPSILGPLVGLLLLISFGPWAFQRLTRFIKSQ
IDSALPRNSVSVHYHRLETGTAEENQRDNEQDEVPTTYRERLNFHNLLY
>RNERV14_pro#LTR/ERVK 1809-2621 [Rattus]
TGLDLXSSSRAVLTPQMGPQALGTGXYGPLPFGSLGLLLGRSSALLKGIRILPGVVDADYTGEIKIMVSVXRGVIVIPQG
DRIAQLILFPQFNTDNPVRKFSRGNQGFGSTGISALWASSLAERPILTLWIEGKAFKGILDTGADSTVISKSFWPKAWPL
DTTQLLLQGIGTASAPFRSSKILKWKDEEGHMGYFQPFIIDNIPVNLWGRDVLHDMGAVLTTQPAQTMMKSMGRSPGRGL
EKXFLQGKSYSINEEKQIIHHPWDKSGLGNLS
>RNERVK3_pro#LTR/ERVK 2297-3118 (renamed to ERVB4_5_RN, but "new" consensus is poorer) [Rattus]
RATAGSAGVDLCSSTTRIITPEEGTVIIESGKFGPPPPGMFFLIIGRASSALQGLVILPSVIDADYSGEIKFLATATQGP
LTLRAGQRIAQALPLPFMGQFPHKVKGRGSSSPGSSDVYWVQKLTDERPMMSLWLDGKQFQGLLDTGADTTVLSSRHWPS
TWPLKATATHLKGIGQTQDTLQSSKLLTWKDKENNTGTVRPFVVSGLPVNLWGRDILSQMGVMMCSPNEVITNQMLRTGF
LPGKGLGRNEQGITEPLTPTPKTDRGGLGADLFS
>RNERVK9_pol#LTR/ERVK 2743-5436 [Rattus]
PYNCPTERKESGPGFFLGAAEEGIPITWKTEEPVWVPQWPLSSEKLATAKALVNEQLAMKHIKPSVSPWNTPIFVIKKKS
GKWRLLHDLRVINQQMQIMGPVQRGLPLLSSLPACWPVVVIDIKDCFFSIPLCPRDSERFAFTVPSCNHEEPDQRYEWVV
LPQGMANSPTMCQLFVGNAIAPLRQKFPALRCVHFMDDILLTAKNEEILDLAYGNLVKLLEGKGLIIAPEKVQKGNLVNY
LGAKVSPYTIIPQKVELRKDNLKTLNDFQKLLGDINWVRCYLKLPNYELKPLYNTLAGDSALDSPRQLTDEAREALKKVE
KGLQGAXLHRWKEGADIVLCILATYMQPTGLLWQDGPLLWVYPRASPARSVEYYPTAVARLALNGIQQCIQXFGVSPTSI
IVPYTGQQMKILCGTVDDWAILRCGFHGEIDNHYPKHPLLSFFKEHPVIFPKVTSSVPIQGAPNIFTDGSKNGCGAYMVD
HQEPILCQYQPGSPQVIELKIVLEVFKNCSFAFNLLSDSSYVVNAVKILEVAGPIKISSTVCQLLRELQELIWKRGHKFF
VQHIRAHTGLPGPLSEGNDLVDRCTRMEFIFLSSSLDQARQFHQQFHVPTKTLQQKFHLSRADARQIVLGCQQCITFHHP
PSVGVNPRGLLPLKIWQMDVTHISGFGTLKYIHVSVDTCSGVIHATPMSGEKARNVIGHCLEAWAAWGKPQHLKTDNGPA
YTAQSFKSFCKQMDVQLSHGLPYNPQGQGIVERAHRTLKECXIKQKGGIGHGRTPKEQISLALFTLNFLILDDDGLSAAD
RHQCRAGTLKGYVKWKDVXTGLWHGPDPVLAWARGSVCVFPQDRQDPLWVPERLTRRCNKNEDPAVADTSRCDPNAGPNG
APVGDTIGVPETHADTS
>RNERVK8_env#LTR/ERVK 5531-7274 via tfasty with MMERVK10C_env, 1 frameshift.  [Rattus]
MRLRTLLLLLGMVIQVDSLTLWAIARSWPVPMPVHSNSTVLPTFFSTSCLRDVPCIVPXGEXPQRYAATNXSLLHTLCFT
XKNSSLPCXWLXRATLANWLDPMSDSXMGTGIILAALSQITQGASSXSGDTSVDSSADLNITXLIMMHNCSXPSRPGQGN
YAQDNSTRRRVLPACPPYQEFPPNFTPCQSPFHRAKQFLPGFEFSPPLGXVQYDWGENKTGKHNLWPWXQWVLSNEQGAY
TSLTPFARLXGENFTLYNVSATRKNDTRLTNIQXNSLLANDTAASTSVCVRPPFFFLISTNVSDDALNCNSSDVVCYLAE
CWDGTNDTAVMVKIPSFVPIPVEANPDSFPXLNLLRTKRDFXITAAIISAIVLSAAAAXTAAIAMTNQIQTAETVNQIVE
RTAVALEIQEEFNTHLASGLLLANQXIDLVQEQIEALYHMTQLSCVSSLRGLCITPLQANFSQHSQQSKEISNYLKGNWS
MKAEQLSRQLLMQIAVLNSTRLDPITIGDFTSWITNAFSFFKEWXGMFAWGAIVLLGCGVCLWLXGRLKREHARHKAVVY
QAMAAIXSGASPNVWLASLKD
>RMER16_env#LTR/ERVK 4229-5239  [Muridae]
KLAAVLYEXTLAIDKIGTGSGFRTSVSACVKAPNLLLIGHVKITFVSSTVFNVSCIDCTLSNCVSVLKPGMSVVMVVYQP
AFVLLPVSITGPWYSEKSLQVLEEVSQALSRSKRVVGLIIAGIAALITLIASTTASAIALTQEVKTATFVNHLAKNVTNV
LSIQEDLDRHLEQRIDALYDTIQIIGEEVQXLRVRSHLECHAKYQWICVTSKIYNDSHYNWEKVQRHLQGIWHNSNTSLD
VLTLHXEIMNLKNAALLSFDAADTADKIIHGLRSVFPSWSSFKNGIYGLIMLALLVLGILLFLPIVLKLAFNNINMLAAK
VHGLKLKMNPQTELLI
>MERVK1_pro#LTR/ERVK 154-1332  [Macropus eugenii]
MGNQLPVIKPEEQEVWAEILYRECREAGVTIELNDLREFCKRIWKVSPWLEQTGISRERWGAVGEQMTAYEQLRPGELED
LDFLIFSVIKSLLEGLERPGQDWNESGSGERGGENPGKQKVKECREKIDSELHLADGKGEAGENTPCLPSVPPYSMLHWS
DSLGPQSSLEKGIRKAIENGEDVGTFPVLEIADPSVPGGVWRSHIPIEWKRVATLKEACTKHGPNSPFVISMLETLSGQF
VLTPNDWKSLARACLTPGQKEISTGRGQEKLPIAIALPLKHSVQIQLLKEIGQNRPECTIWLNGIPMTGLIDTGADRTCL
SGRSVPRHWKLKESQRPVWGIGGCQNTLETMHPVKWEAEDRQGTVWTLVIPGLSFNIWGRDIMSRLGMKLSNF
>MERVK1_p2#LTR/ERVK  1743-2111 Tiny fragment [Macropus eugenii]
MRHFVTIPRQPRKESKTQAGNKDTWAMVKDMASGKWKGPYKILIWGPGYVCVSTGKGNAWITIRRIRRCKPMSETAEMQE
VETPESPETPEKDHAPPESTDDNFNPAAQRGSSTHPNIADHSI
>MMTV_env#LTR/ERVK gi|9626969|ref|NP_056883.1| gPr73 env [Mouse mammary tumor virus]
MPKHQSGSPTDSSDLLLSGKKQRPHLALRRKRRREMRKINRKVPRMNLVPIKEKTAWQHLQALISEAEEVLKTSQTPQTS
LTLFLALLSVLGPPPVTGESYWAYLPKPPILHPVGWGSTDPIRVLTNQTMYLGGSPDFHGFRNMSGNVHFEGKSDTLPIC
LSFSFSTPTGCFQVDKQVFLSDTPTVDNNKPGGKGDKRRMWELWLTTLGNSGANTKLVPIKKKLPPKYPHCQIAFKKDAF
WEGDESAPPRWLPCAFPDQGVSFSPKGALGLLWDFSLPSPSVDQSDQIKSKKNLFGNYTPPVNKEVHRWYEAGWVEPTWF
WENSPKDPNDRDFTALVPHTELFRLVAASRHLILKRPGFQEHEMIPTSACVTYPYAILLGLPQLIDIEKRGSTFHISCSS
CRLTNCLDSSAYDYAAIIVKRPPYVLLPVDIGDEPWFDDSAIQTFRYATDLIRAKRFVAAIILGISALIAIITSFAVATT
ALVKEMQTATFVNNLHRNVTLALSEQRIIDLKLEARLNALEEVVLELGQDVANLKTRMSTRCHANYDFICVTPLPYNATE
NWERTRAHLLGIWNDNEISYNIQELTNLISDMSKQHIDAVDLSGLAQSFANGVKALNPLDWTQYFIFIGVGALLLVIVLM
IFPIVFQCLAKSLDQVQSDLNVLLLKKKKGGNAAPAAEMVELPRVSYT
>MurERV4_pol#LTR/ERVK 2520-5168 (MYSERV6 pol very close) [Muridae]
MLLGKVLIYVIKNNPRLCQLSKHRTSQGLSFQIYKGGATAEIPTALPLKWLTDKPVWVXQWPLTKEKLQALEQLVQEQLE
AQHIEESTSPWNSPVFVIKKKSGKWRMLTDLRAVNRVIQPMGPLQPGIPLPSLLPKXWPMIVIDLKDCFFTIPLHEQDRE
RFAFXVPTYNNGXPVKRYXWKVLPQGMLNSPTLCQYFVQQPLEIIRRQFPQSIIYHYMDDILLADSDTDTLEKMFKETQR
ILPCWGLQIAPEKXQRGDSINYLGYKISQQKIQPQKVQIRRDQLQTLNDFQKLMGDINWLRPTIGLTTXELSNLFQTLQG
DSDLNSPRWLTAEAERELTLVEQRLQDAYVDRIDPKLDCILVILPSTHSPTGLIMQREDSIMEWIFLAHKVKKLKTYIEK
VSXLIIKGRIRLRQLSGTDPAEIVVPFTNAEIMSLWVINEDWQRACSNYLGEINNKYPKSKHLQFIKRTNWILPRIVKGT
PIPEAPTFYTDANKLGMAGYKSDKISKVIQSPYTSVQKSELYAILMVLLDFPESLNIITDSQYAERVVLHIETAEFIPDN
SELTLLFMQLQQAIRNRNYPLYITHIRSHTGLPGPLAQGNEEIDQLLIGNVLEASKFHEKHHVNSKGLKKKFSITWQQAK
EXIRKCPTCSLYNQTLLPAGSNPRGTKRNXIWQMDVFHFAEFGKXRXVHHTIDTYSGFQWATALSSEKADSVITHLLEIM
AIMGIPAQIKTDNAPAYVSSKMKQFFAYYNIKHITGIPHNPTGQAVVERSNHTLKEMLIKQKGRIKTPRDRLNSALLTLN
FLNVGEKGTTAAERHWVIEKTVELNQPIYYKDVLTSEWKPAKVLRWGRGFVYISTGNEKLWIPSKLIKIRTEQERSPENL
GH
>MurERV4_gag#LTR/ERVK 41-1721 [Muridae]
MGNLISNAVEETAGDEGMDIFFQXASKKFIVAATAGISPALLPEGIFCFFFSFSSSYILFQKRLEEWLSSWKNCGWKWRG
LRNKKMAEMGKQKGSLCSLVSERVAELAVQLERLRVEVEALGRRGAPEKREQKGSVPVTEQESGSFPQEERGKETVPEGG
RVREKLKKREDNLMKQPISRERVNLEPTAPPEXEEGRPGVTRSPSAFPVVVQHMPANGVEQGYDEIGWRPIEMIDLRHFK
EAMISYGMHSPYVKQILNNWATQNRIIPQDWKGLVTAVLEAGPQLQWLTWWREEAANIEQRNRARGMNIVKDQLLGEGRY
SDIQEQIQFDDATIEQCRLVALRAWDKVEEPGKKSTSFTKIIQGSGEAFTDFLQRLVSAVNKAVSDPDARQVLIETLAFE
NANTECKKVIRPLKARAAPMDEWIRDTTDIGSNVYHANXIGQAIARGLRYQNARCFNCGKYGHLQRDCDQAAKGLRSQNA
RCXNCGKYGXLQQNCEQGISKGNGFSKYKPERRPRLPGVCRRCGKGCHWTNECRSKRDIQGNFLPSGNGLGGLARGPAAK
>RNERVK22_gag#LTR/ERVK 193-2379 RNERVK23 close [Rattus]
MGQAFSKQSLFVTGLKQSLKTRGIRVKKKDLIKFLDLVEDICPWFPREGTIDQKRWLRVGDCFKDYYEVLGPTKIPVTAF
SYWSLINDILRTTSEWPDLQHLVKEGERSLKESSLRELAPLPLPVDPILGEESASGVKSSPSPPSVIIDMESAFDPIPAR
PFSAEKIMSNAPPNTPECQPHRQLYPSLQDLGKGGVSSPEQEVKIEAGAARFESKTATIALATDGTRAGTRSPLSFPPPP
YGLLDAVLDSPPVSDACRQLTNDVTSLRHMVETRKEQVQLLIALRDLETKLTELTPLQSPQLKATGQGKTPNKKHKVLAF
PLSLRSGAKVPRDPSTPXTLEEEEDRVTDGDSEEETELHPDSQEPGDTAAGSGSRAARAAPGPPRYHYQPLDFKILEKLK
TAVSNYGPVAPFTLALLESSTEGWLTPNEFSQLARAALSGGDFVLWKSEMAEAAKEIETKNRVRPDTRSWTAKKILGEPP
FNTLESQMQFSPGLLAQIRQACLAAWKRLPPKSGFSSTLTKVLQGADEPYNSFVSRLTETAERLFGVQEPENPFIKQLAF
ENANSTCQDILKHHRSKPLAEYVRLCAGAGTSHAIGLAIGAALQKAGFNSQKTCFNCKQVGHFMRECPHPRQYKRPPAEG
QGNASPMRAPPTTLCPRCSRGRHWANECRSKTDSQGRPLPPRQSGNFPRGQPPAPSFRTGPGAIGFVPQQASHTSPNQSH
PSPNQLPIS
>ENS3_pol#LTR/ERVL 2484-5552 [Gallus]
MFIRKLTTKGNDLLITCIVEPKLVPITFLVDTGAQISAIKREDADRAGVTLSRRKIFVADAMGGVHSQNMATVRLRLPGE
ERSQDVPMVVGTLPLNLLGLDMLKGKSWTDDKGREWMFGVPSLNIRLLQTAPPLPPSNLTCVKPYPLPLGARSGISPVLA
ELKEQGIVIPTHSPFNSPVWPVRKPNGKWRLTIDYRRLNANTGPLTAAVPNIFELIAAIQEQAHPFMATIDVKDMFFMVP
LHPDDQLRFAFTWEGQQYTFTRLPQGFKHSPTLAHYALAKELEQIPLEEGVRLYQYIDDILIGGDHLTPVKIMHDKIIKR
LEELGLTIPPDKIQSPAAEVKFLGIWWKGGMACIPQDTLSALDQLKMPENKKELQHALGLLVFWRKHIPDFSIIARPLYD
LLRKGVSWGWTPVHEEALQLLIFEAITHQSLGPIHPSDPVQIEWGFAHSGLSIHLWQKGPEGPIRPIGFYSRSFKDAEKR
YSQLEKGLFVVSLALREAERTIRQQPIILRGPFKVIKSVMSGTSPPDGVAQRASVRKWYAQIEHYCNIFKVTEGAPKTLA
IQDDILSTTDTDLPSVVQVAPPYSDQLQNVWFTDASSKREGKVWKYWAVALQIGTDLTIITEGEGSAQVGELVAVWSVFQ
HESESTTRVHIYTDSYAVFKGCTEWLPFWEKNNWEVNRIPVWQKEKWQDIISIAKKGQFSVAWVAAHQEDGTPVSHWNNR
ADELARIAPLRQGEPDSDNWERLVEWLHVKRGHTGALDLYRETQARGWPVTREQCRTCISACDLCRTRLGQHPLQDAPLH
LREGKHLWETWQIDYIGPFRKSEGKQYVLVGVEIISGLLQAESCPRATGENTVKALKKWFSILPKPTSIQSDNGSHFTSG
VVQEWAREEGIHWIFHTPYYPQANGIVERSNGLLKKFLKPEKTNWSTRTSDAVRRVNDRWGINGCPRFNAFYPKAPPLLP
ITLNPDKLEEPSYSPGQPVLVDLPHVGPVPLTLMESLNKYTWRAKDAREKEYKINARWIIPSF
>TguERVK9_pro#LTR/ERVK 2468-3292 [Estrildidae]
WPSTPGPGKREAEREGGARSDTSSSPDPRAHGGLLGQLVASTCGSAGVDVCTAATVVLDSCKVHKVPLDAFGPLGEGMSA
FLMGRSSATLQGVIVHLGLIDADFTGQICAMVSTPTPPVTIPKGTRLAQLVPFKSSVRRTTDRLRGDGGFGSTGPPQVHW
TAVLTKDRPEMLCTLSIPDATPSEIRLRGLLDSGADVTVLSLAAWPPDWPLDPAETSVAGLGGTARCYVSQRPVLVTNPE
GQTAWIRPYVTSSPANLWGRDVLSAWGVRIGTGF
>ERV3-1_AMi-I_3p#LTR/ERVL 5183..7123[Crocodylidae]
MHHFNFVMYCFVCLSCLYLCRDAVFAATYQYHGGWVGATRNRISGNYTCPPDLRSCLFLNLSVDSTSCKVGPSPGKGWGT
LYCNETVTVNFSFAVGPPPIKCTTIKQIWLTKREVQQSLKNLSGSWDSGSGSKIPMTQVSPNSTLICYNTSIITGRGWWV
QLLDVRHQPSVPTWKPHIARVRSTCRTVWQGPRIHHVQYTINITKVDLRKSKKECAPWLEHTLRVKRDISDTILGGIGAG
TGVVNSFDIETLANKLSKLGSLDGQALKLIGSWGPLLPWLTGTHLVGTYHLWQWVNQTALEITGILKKQSTFQNATLCML
WQLQAYQQYHNLRAVIQGSSGSEWRKALGIQFEGWLQPLPQYTQCNTSVCTVEFKLAINQTWPAVWCEMQIFPQLFGDQW
WVPTFEGSHIDLMNRTHRIDDCENWPEGWVCPARNHLYEPCTYSHDPSHCRWERWWLQETLTYDLRNGTACVFSPNPIQW
NGDEVSSPPVCECRHQVMIITDLRTKESVPFLNVSYEAMHSTLPIPLWVIPVKVSFTQLEQLLDQHEEITHQLQKIATTI
ARTGVLITTQRGELLRIAQEEHDLTVHHWWDIFKGWSPKANVVLNLLLHPIVVICIVAVCLLLWTCFLYLRIRSLAHLYN
IQRMRTA
>ERV-4_AMi_pol#LTR/ERVL 1483-4470 via tfasty with TguERVL-A_pol, 1 stopcodon. [Crocodylidae]
MDTGAEVTIFQWEHAPLNGRPVVLKGVGGGAVKGWEIKGMVKLGEREVSTVVTATRLPLWILGTNVLSHCIIDGPRRRVM
ALEKEAPLPRDGPWVHSEWDVGCTKEEIQIELEKGVRPRFVRPYPLTPEAEEGVSEMVQGLLRAGLIEPTISQWNSPLWP
VRKASGKWRMVIDYREVNKRTKKLGPVVSTLPEMWDVAQRAGASHFTVINISNCFWAIPVRESDRDMFAFMFRGKQYRPL
RLPQGWCNSPILAHQQVRKALDSLPRVQSYVDDILIWANTPGECADISHQVLQALGMAGFRVDKRKVQWVQRSVRYLGMQ
LDARGLGILEQTKEALAQLPPPHTRKELQSQLGLMGWCRAAVPDFASLARPLYQALKVKGDPWAWGEEEEGIRQEMLRVL
LDSPPLLPPDPSTPKYVEAGVQGDXISAVLYQRSRQRWENWELLGAWSRALSNTEAHYEPLQKEMLAVVFGLEKGWRLVG
DAPLRIRAWPGILTALRKGPPAGSPHQTRWLKWSLQLAGYPHWEAGGMLKNPVLPWLETPAEGEAISPITPTESFDPADP
QALFTDGAADGVMAVWAWYCPFSGEYGRGEIQGSTQLAELKAVEEAIAYGIDKGWTEIRVYTDSWVCAKGAIKSIPYWKK
AGWHLKGRPVWGMEIWQRIWEMSGQIRVAIRHVAGHQGDGSPEAIANAKADSLTRPSRINSLETARAAHAFAHEGGKGMW
RRLRQEGRRATEAEVRQALEECPACSTHRRSPYPGRGQVDVRALEPGEEWQMDFVGPLKASEGKRYILVAVDVATGWPEV
WPTTEATGETVVRALKEIEARFGKPRCLKTDNGSHFKNTVVGRWCENARVEHRFGIPYHPQGQGKVEHLNQELKRKLEVA
QEVFGKGWVRQIPWVLRALRTRGGEWGTSPFTQMMGQPPRFQWEEEVELGLEQGDKNxSLRPPLGAKIKFTSRPGQRREQ
EGLVLAWGQGNTVLVGTPTSKYWVPANQTAVFQETP
>ERV3-3_Crp-I_1p#LTR/ERVL 56..1555[Crocodylidae]
MEGVAWAPLVALLKEVTGMENPGWDKDRLRPAWSDPGTVPDHWARFAAAARGKPRKGCLSWLLATCLRLGAEEXAQLREE
VTRLSKELEDVRDSNSVACEAARAAQSRLETLERREGKIMIARVAASLQKRAQLAQAVEPSFHKIRQCLYGQRPEVELWE
DGEEETDDEPGAEPPPYVPAQREEPSQVFPVVVTRSGPQGGNPRTELRSFTRAEIRDIQEQHKSKPGEPVIDWLVRMYSE
GASAISVSRAEAAQIILRPELQLNQFAGGDENVTLFSAALQATAASYGNMEEELSPAPRAWVNLEEAVRCLYQLALTEII
RAAVWTRTPDAEVVTAPLWRRFCQRAPTECTSALLALEPEAVDHPVRDAIRRLVQLLPILQKPGLAKPTKTAKAMAVASA
KDKPPDPPELLEKAGEGWPKTPRAKLWKDLLAAGFNKVQIDGVPTNVLRGLWAKHCSEKASPKAEPSAPPKGFSALRAEL
STLSQAPAGPPASTPPDHVA
>TguERVK8_pol#LTR/ERVK 4086-6836 via tfasty with TguERVK9_pol, 3 stopcodons. [Estrildidae]
MGVTVLKGADYPTLPLRWLVTRAVWENQWPLPFEKLVALHELVQDQLRQGHIESSTSPWNTPGFVIKKKSGKWRLLQDLR
KVNALMESMGxLQPGMPSSTMLPAGWDILLLDLKDLFFMIPLHPDDRPKFAFTVLSVNNDRSVRRYQWKVLPQGCKNSPT
ICQWYVAQALSGVHEQFPDVYCYHYMGDILVAALTREELQRVRPQLFSALHSYGLQVALENVQSRPPWKYLGVKILExTI
QHQELQLPETIATLNDAQRLLGVLNWLRPYLGLTMAQLSLQFKPLKGDPDLSSPWKLTPEARQALEKVQKALSTCQVYRV
DPSVDITVFITYPDGHPTGIIGQWDEKWPDPLHILWWVFLSHQPKKTVSLLIDLVAQLIIKCRYRCLQLMTANPVRIVLP
MERDTFEWCLINNVPLQCALQNFLGQIVYHLPSHKLLQMAKTINLSLRPKNSQVPVRGPTVFTDSSGRTGKAIVTWKDES
GWQVLEGHVSSSAQLVELKAVAMAFQRFSQVPLNLVTDSAYVADITKRLDCSLLKEVNNAVLFQLLRALWCAIQDRVHPY
YSLHIRSHTTLPGFKTEGNARADRLANPAWVAPQPDRTAQAKALHDFFHQSAHTLQKQFDLTATEARDIVSSCADCHGFA
APLPAGVDPRGLKALQRWQTDVTHIAEFARLKYVHVSVDTFSSAMWATVHTGEKSRDAIAHWRMAFAVLGIPSCVKTDNG
PAYASQKLCQFLHLWGVSHKFGTAHSPTAQAIVERVHGTLKRVLEKQKGGMPGETPNSRLEKALYAINHLTVPKNSEIPV
ILNHFLSLHSAGETHLPxAQVWVRDLVTNRWEGPCNLITWGRGYACVSTGTRVRWILAKCVRPDLRQQKQSVVNRQPVSS
DHAADHPSQSSDDDQDTDHQSAGPSTFDLLCFLDMDW
>SRV_RN_pol#LTR/ERVK 2908-5514 [Rattus]
KRIGKFLISTIDVPAPQGYADPIIWKSDEPIWVDQWSLTSEKLEVAQLLVQEQLEAGHIQESNSPWNTPIFVIKKKSGKW
RLLQDLRAVNATMVLMGALQPGLPSPVAIPLGYFKVIIDLKDCFFTIPLYPDDQKRFAFSLPSINFKEPMRRYQWRVLPQ
GMANSPTLCQKYVAKAIQTIGDSWKSMYIVHYMDDILIAGQEGGQVLQCLTQLKQALAASGLQIAPEKVQLQEPYTYLGF
QMNGPKIINQKATIRRDQLYTLNDFQKLLGDINWLRPYLKLTTRELKPLFDVLKGDPNPKSPRTISQSALLALQKVKDAI
AKQFVTHINYNQPLVLIIFNTTVTXTGLFWQSNPIMWIHLPSSPKKVLLPYYDAIADLIILGRENAKKYFGIEPAKIIQP
YTRPQVDWLLQNTDTWPIACASFAGDLDNHYPPDRLIQFCKLHAVIFPRIISKEPLDDALLVFTDGXSNGITAYTFKDKI
VKFQTQNSSAQLVELQAIIAVLSAFPDVSLNVYTDSAYLAHSIPLLETVGQIRYVSETATLFLCCQKLIQKRTKKFFLGH
IRAHSGLPGPLTRGNEVADGATKLIATASPGLPENLQRAQTAHSLHHLNAHTLRLMFNITREQARQIVKQCPSCVIHLXT
PHLGVNPKGLVPNMIWQMDVTHYSEFGNLQYIHVCIDTYSGFIVATLQTGEATKHVIAHLLHCFSVLGIPKQIKTDNGPX
YISKAFQKFCTQLHIAHVTGIPYNPQGQGMVERAHLSLKXTIEKIKKGEWYPTKGTPRNIVNHALLILNFLKLDADKKSA
ADRFWHPNSQKQFAMVKWKDPLDNTRHGPDPVLIWGRGSVCIFSQENDAARWLPERLVKQIDNXNKSRE
>SRV_MM_gag#LTR/ERVK 154-1968  [Mus mouse genus]
MGQEISDEGNFSFSNAWTYLVILNSLSQLFAMYCLLXFYKVLKEKRSPIQPVSKFLCVKLVVFVSFWQAVLIALLVISEK
RTWEWQSAEAVAIGLQGFIICIEMFFVAIAHHYTFSESDRDDLEEEAAKYHDPEWPPFQRPPPSAPPGPPDGVLGMAVLD
PRKELQDKISALKRQIELEEEYQDLINQLQELKTRKTSREGKATRENPPGPRVPQLGVQRRPLPSGFSSAADRPEEGEAE
AFPVSETTDAQGVAWRHHTGFNFQIIKELKNAVSQYGATAPFTLAILESAAEEWLTPGDWNTLVRAVLSGGDHLIWKSEY
HENCKEMARRNAQAGNAWSFDALVGEGQFASSDDQMQYDPGLFAQIQNAAMKAWRKLPVKGDPGASLTAVRQGPDEXFSD
FVHRLMTTAGRIFGNAEAGVDYVKQLAFENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAMQGQSVRDF
LASRDKKACFKCGKPGHFAKDCRAGNESTXRQPGKQPGLCPRCKRGKHWANKCRSKTDTQGNTLFPNRGNGSRGQPQAPN
QHKPKQAYGAVSFMPASNNNPFQNLVEQPQEAQDWTSVLPPTQY
>TguERVK4_pro#LTR/ERVK 2345-3346 (pro-pol ORF artificially broken to give separate pro and pol peptides) [Estrildidae]
KPTARARCLQPRGTIKKLISQRSPSLREDTNLVGNITSGGRRDNTLAYPPEDNNSNTXHDITGLHNRGTRAGEPACVGGV
GNFISQAWLGRDPDHPRPILNTQSNFSPYRLALTEPLLLRDSNWHFVTVDTQDPGTWRKLHSKYIVLGDTKYTPLDITIA
PNLTSANPKHLVLWLHCAHPPVYLPKGQIIAQAIPVSGAPVYPEDLWMKTAEKIYEVCQAQVIGKDRPKIACYMWNGGEH
KWLNGLLDTGADVTVIPSRDWPSRWELQDVAGHIQGVGGAQLAKQSKNIIKFEGPNRQTAYLRPFVLDYTEPLWGRDLMA
QWGVTLTIPTPQV
>TguERVK7_pro#LTR/ERVK 3008-3856 [Estrildidae]
KTQSKKLQGERAAPPRDETNSGPPNSRGKICEYPDPNALRXITSTIPANDPSLLSPGTWCTLATSKPTTFLKDDGYDYIS
TGITGPSQLRQDFLIVGKERNCILGLLVLPCVVSANCNEELLVLAKAYYPPLHIPPRTPIATAIALPMGTMDQIPPRCFP
VASENPEVLWVQHISEQRPMLTCELSNGGVRVTIKGMIDTGADVSVISSCYWPTDWRLVPPPGTLTGIGGVTPCLQSESV
ISIEGPDRMKALIRPYVVQKPITVWGRDLLSAWGAKIELGFL
>TguERVK7_pol#LTR/ERVK 3841-6558 [Estrildidae]
TGFFVGATKALSTPKLTWKTDTPVWVDQWPLPDNKLSALKELVAEQLQKGHIKPTNSPWNSPVFVIHKKTSNTWRLLHDL
RKINAVIENMGPLQPGLPNLSMIPRDWPLIIIDLKDCFFNIPLHPDDAPRFAFSVPSTNLQEPLQRYHWLSLPQGMKNSP
TICQYFVARALTPVRQKFPQSVILHYMDDLLIAAPTQEQMRGTCSYAVAEVKKAGLVISESKIQETAPWKYLGWKLTDQS
ISPQKIQIRTDVRTLQDLQQILGEINWVRPVLGITADELAPLFDLLKGDNELRSPRSLTPEACKALEHITDALQNRQAHR
YVPGQPFFLAILGEKLRLCGLIFQWDSSLKDPLLIIEWVFISYRSPKTILTPLEMMSQIIIKGRARLLSIAGREFETIYL
PMKKTYFDWAMQKSEDLLYALLDFPGACSIHYPAHKMIKAKLCYKEKPMISEEPLNAITIFTDGSGRTHNSVVTWQNTNT
KTWEQDVQKVEGSPQIVELAAVVRAFQLFPEPFNLITDSAYVANVIKRIEGSVLKDVSNNDLCLWLTCLYRILSHRANPY
FISHIRAHSGLPGFMAEGNARADALASAASDEEGXAGVEKSTSVLAATTLPNTIEQAKLSHAFFHQNAQAIKRDFRISLE
QAQNIVRACPNCQHVQPLPPSAATNPRGLESLQKWQTDITKYPSFGKFKNIHVSIDTFSNAIFASVHTGETAKHVCQHFS
QAFSYLGVPQEIKTDNGPSYTSQELATFLNDWGVRHTFGIPHSPTSQGMVERTHQTLKRILNQQKGGVDQATPQKRLSKA
LYVYNFLNSSTEEPDPPIYRHFLNNKKAKIKEHPPVLIKNLDXGQIEGPYNLITWGKGFACVSTGQGLKWVPGKNVKPYH
APKSAGTPTPDSTSASTSQEASTQT
>EnSpm-3_ADi#DNA/CMC-EnSpm 1178-6452 via genewise with EnSpm-1_ADi, 4 introns (2069:2404, 2630:3074, 4087:4384, 4588:4933) [Acropora digitifera]
MAEYFGCGFARVAARQSFLKPNGKIEYDQDLRWKRYLSQFQGPHSERFAVAEKKYFHKRSKVLSLHFKRWKTKDKSQYIE
HFDQRNWENLPELEKKQHERMNCQGCAVHHYTFQSLFPSWGKNNSLKLQAINKTQSRVLKPSNAANVKPTLKAIKQATTK
IYEDINGPFQELFGMSFAKAQTKTPELCLQEKKSQAELRKQRREKLRAEKKQMEEHWSNRDCDTMLATRQTYMQRQEQRL
ALFLETPEDTENRSAKRKDSEDHGLLKRKRHSPKPEDLQFDKDGLLQEVKTMKDGDKINYSELARQYGLMQQTKLGNMVV
KEFLENNNVQLSRFKQFRGKTPAARRRLNRMQGGEISVPLPRTNDQIRETLKSKIESGEYILGEMIVPQTYKKVVLTEDG
TIKTELFTVSGRKIPLSDIRDRTLKQHEKLGLMHVRTDEDYTAMTKEQVYERIAQLNESTNCPETANLDELKKYLKRVER
TRHLMVWADNSTLLNHGYLLLTVNAVYDEALYFTDKEMKEQGKGNVDVQSLVERPQVYILARCGSSEAEQIAYINTRKVC
LEGLKNKVVTSNGIQITDVMRLFHGDGPQQEFESGEQKGGNAGCSGCSGDARKYKYLSVSLSKPFLSLMDRLRKVLQGPA
GRNKRNGGLKPFKNLRLEELREECQARGLPTDGKKKDLEETLREEMGGIQRVPAMMFFDQERTLEEINLGKYEVLPTEPL
HDVKEHIFNVTXELPAHLEREECDHFESIVECTFAGKEKLRGCDYRLAAVIVAQYLRGKVRAKVQSLLDSLTELSRLLYL
SAQSRSPRLVLRLHNTAFLHAMLCKDIIGQPEILTTCKFYGRYWHSXTAHAGKQNRIISGKSANTEEEEERHFNNLQGIT
KXTNRRPGDVFTPSLVRLQAEQQMAETRQGNAVKAQESQISKYYKALPPFPNTIIPNRYIVRNPKEYQAHLQSISDFLIC
GEGVWWQQIASGVEFRDGPDELNFRPEGPSLHHFRSSSLVLEEEHLNQCWEICLADEAIRIPHRVIRLYGGNGDCIQVIQ
TDFRDDDNEGSSDEENENADNIKTSTSNEQCELEHWDDDTEEQAESVELTAMDNGAFLALNKEPSVCYDSNDEDGGAGTQ
GLQVLNVSSLSTPDEHQSLQKSSSGFHNVPSRNDTVITSTPECKQSGKQLATKLCKNIAKILGETDDVYRLDKAREDQKS
HPTSPFYNEKYQNLLSVMQTKILTKHTSLKKEHSNWEKEYCLKHDFHEPNLNDVKKDKKQYSVYKKIILCDELLKYWGVT
VHLY
>Tx1-14_B_pol#LINE/L1-Tx1 1726-5501 via tfasty with L1Ci-B_pol, 2 frameshifts. [Branchiostoma floridae]
MTQVELQISSYNCNGLSDSVKRRELFTWLRDKPYHIICLQETHSSIPVEERWQSEWGGTMIFCHGTSNQRGTAMLFKNNI
NPHIHQTKLDVNGRWIIVDLSIDDFRFCIVNIYAPNDDKPEFFLNLSMELDNFADSTENLIITGDFNTVQNPLLDRFSTN
CTYHPKAYEAISEFKSKFDLHDIWRFRNPTTVRYTWRRRRQASRIDYFLTSFSFINRVNKCVIADKFRSNSLIFCIAQFP
RGKGYWKFNLSLLDDSSFQHNTVKIMNEFFSINQGTADPHIVWDTAKCFFRGHCIKFSSWKNKQYLAREKKLTDDINRLQ
SQIDNMPSPSESILDDLDGKQKQLELLYNQRAKGLIVMSRARWMEWGDRCTQYFLKLAHRNYTRKNMQKLKISDNVFTSN
PQEILEKQSEFYSSLYSFEEPPMPLSPENIEPFFPAQYNKKLSNEQQLLCEGHITDEELQKAINTFSNSKSPGLDGIPVE
VYKHFYSVFKTPMLNCFNFSLSKGYLSNSQKQGLISLLLKEGKEGQHKDPTILDNWRPLTLLCCDVRILSKCLALRVKTV
ITDIIHKDQTGFVKGRFIGDNIRRILDLIDYYEKEEKPGLIFISDYKKAFDTIRWDFIIKSLEFFNFGPQFIAWVRVLYS
NITSSVINNGYISSPFTLHRGVRQGCPLSPYLFIIAIEMLAIKIRRNHNISGLSVKGRTSKISQYADDSNFPFTPDISSF
YGLLEDFDSFSHISGLLLNFDKCKVLRIGTLKNTNFVLPSGHPIKWVDGGIEILGIYIPVDLTNIVTQNFDPRLAKIDKL
LFPWKGKKLSLYGKITIINSLLVPQFTYLFQTLPLPDKHFFKHYEKNFFSFIWNGGPERVGRKTLYNSVENGGLNLVNLY
AHALTLKASWVPKLFFNPDWFTACILHTHPCIESVLFPFYQLKSAQDLTLSPFLSEIFQAWYSYQYKPPITPDEIRQQVL
WMNSNIQVGGKPIIFNSFVNRHIIFVNDLLNIDGTIMSYNELCYTYGPVCNNFVYLQLLTAIPKKWKSTLIGVTPTLVCR
PQQHSSEWLLRIKINKDLYKHFLVSEKLIDIPQNVQMAWLYLFDTPIPWKTVYTSVIFCTIDPVTRFFQYKILHKFLPTN
RLLYIWKCVNSPLCSLCHMEEETYLHLFWDCPQVIEFWEKVKTWFSEKIGQTLIVNSFNIIFGNLNQGASIIGNLIILLA
KMYIYKCRESKRVNFKSFINYVNFFEKVEAQIANRRGKMAKHHGKWGTLVTNTASVSV
>Tx1-13_BF_pol#LINE/L1-Tx1 2104-5616  [Branchiostoma floridae]
MASLLLLLISQMALNIATFNVNGLRNEQKRTQAFNLFKEKRLDIICLQECHVGDKSEQLKWTKQWGGRALWNPGTQTSCG
VAILFSPCSDWSVSDINKDIDGRIISCKISCRETAFKLCNIYAPVLNSARRKFLSDLLEYISTRNNGNNVILCGDFNFVE
DLTWDKKGGNPTQGNIGNKEIKDICSRFDLEDKWRVLNPNTFRFTWRDKKCTIQCRLDRFYLPQRLAVSLFTYLPVPFSD
HDGVSFSVKITKNIVRGEGLWRCNNSVIATQTFQLDFDKHFDFWVLLIPYFPDLGQWWDNVKGKIRQLIVSHAKRMALEK
RQNRDRLMERIDFLTITIAQQPNPDLAKELARVKQELFDLKRQENEGAKVRSRVQWEEQGEKPTKFFLSREISRGKAKVI
EEIRDEKGTIIKDQKGISKVFESFYENLYANEDLDEEAQKELLNQLSNTIPEELQVQLEQPLTSEDYLLALKSFSNGKCP
GEDGLTKEFYIMFWDKLKNYLPKILNEGLNRGVLSESQKGSVITLLNKAGDPLEVKNKRPISLLNVDYKILSKAITNRLK
KVLKYVIHEDQTCAVPGRSITDNLLDFRNIIDFVNHKNLEGAIISLDQQKAFDRVNHQFLDKVLTKMGFGHVFRGHIQSL
YKNAYCKIMVNGHLSNKIAFSRGVRQGCSLSPLLYVISLEPLACLIRNNKDIRGVQLPNGTEKKLSMFADDSSALITTDD
SIGRLFEDIKTYELGAGAKLNKGKSEALWLGKWRGRGDGPIQLKQWTNSKLKMVGGFFGNGNLAKTNWKHRISGFKDKLV
KWEDSTLSFEGRKVVINTVLIPTLWYIAPVFPLPKVCEQEIQSLIFKFLWGGKTEQVKRSVLYLPKMKGGLEIVNVAEKA
KAMFALTFKHLVQKESAAWAVIGRYWLGLFLNRLGLYQWSNLVPHCVEWPKTQQHLKEVVEGYNSLDSTLDWSQTTLKCL
YSLSEGTWAGDAAVVLRQPKKNWSKIWAVCHNEILPNVLKDLNWKIVHNIIKTKSTLRFWKLIKDNKCIWPKCNQSETLQ
HVFFECEKAEQCWSWLEGFIRRWIAHDFRIEQSFATLDNVDVLDKISKSKNDIVIYLSSSLRQRLWKERCELLYDKRLSS
PQVTAVNVKTLLKNKITVEFHKLPESEFHRNWVKGFKWLKISNGKLTFRF
>Tx1_FR1B_pol#LINE/L1-Tx1 2-3137 [Takifugu rubripes]
SAGVGILFSRSFNPVAVTVEHVVQGRCLLVKAAFSHHTVVFINIYAPNNGAERKLFLEKINDVLNNLSSSDLLILGGDFN
CTEDHVLDRNHIEPHPVSQQVLRQLVRSHGLVDVWRRMHASHRQFTWSHIRDDTISLARLDRFYCCKHHFSTFKKCDILP
VGFTDHSLLLGCVLVRDIRPKSAYWHFNSTLTADRGFKEAFSYFWAGFRQRKKDFTSLRQWWDHGKVQIRLLCQQHTLNV
TRYITRSIEALETEIVELEQFCESRGDRGCLEALKTKKMALANLLDTKVQGALVRSRIQDIAEMDTPSTFFFGLERKRGQ
SRVIHSLLSEEGRELTEPEQIRRRAMDFYSSLFRSEYKENNELFEEYCSGLPQVPEEANGQLERPLSVPELYAALQSMQS
LKAPGIDGLGVDFYKAFWSIVGQDLLDVLNESLHSGSLPLSCRRAVIALLPKKGNLQDIKNWRPVSLLCSDYKILSKALA
TRLREAMEHVIHRDQTYCVPGRSMVDNIHLIRDVLEVSSSLGTQVGLLSLDQEKAFDRVEHSFLWRTMERFGFNAGLIAM
IKVLYRDIESVLKFNGGLCAPFRVHRGVRQGCALSGMLYALSLEPLLIKIRANVQGLVLSGFTGNLVLSAYADDVIVFTR
DQQDINILNRITDRFSMVSAARVNWGKSEALAVGNWGGGLPVLPGGLTWKRNGLRYLGVYLGCQEMEAKNWDDIVEKVDS
KLHKWSWIKPHMSFRGRVLVLNNLVASLLWHRLACLDPPSGLLAQVQSKMVDFFWDRLHWVPQSVLFLPREEGGQGLIHL
ASRVATLRLQFVQRFLGGPPDLVWRSVASCVLRRVNNLGLDAALFLTKLNFLSLRGLPLFYQGVFKSCALFRWSFVQTDS
LHWLLKEPLVCGGRLDVCSSATPGLKEALIRRRMVTLEQLVAAAGPELTDAQAVSSALGVRSVRLIQRSLGLWKQRLSTK
EKGLLLLHGRGEAETDPTDDFPELHLHPDLLDLGGPLLDGCGSGSLHSMDRRILYANIVKTLNKDKLKNREVTVWKDRLG
GQSPQW
>CR1-1_NV_gagpol#LINE/L2 17-3724 Appears like a gag-pol fusion, with 3end of gag and 5endof pol missing [Nematostella vectensis]
MAATMFFALCLILCMIGTVPHENLSINEMDSSSPKRPSQHQFGFFCTVFKPLPVLLRLAPSGFHRSTRSVTKISKHGYTS
LAIPGHDPPIDVTIFMDISINPGPEIHLDYSSRPAMDLHTASYTKTTPTFSRESLYSIRRQMRTRNLFLKPVNISLFCTL
KHLGIFRFRGKRAGKRKRSEANLQLELQLHVNTVISSDPGRNHSIINGTKLCENNSQHLPVLITTRHDYSTSANTHNARN
SSNLLKINSVKITPDSAPRLHLATWNIRAMNRKAASICDLVISKRIDVLALVETWLTAENNSKSTVVEDTSTRLPVPNCS
DPTVADVINTLRDFDFIHLPRAGRGGGIGFFLRKALNVKPNTSTVFKALEYVDLSITASSSSMRLVTVYRPPPSKVNKLT
TRMFFDDFSVLLEHLAMDPGKLIITGDFNFHIEDPGDADAVRLLDMLDAAGFEQKVVGPTHRKDHTLDLVVVRDGNLSVR
GRPEIVAFPNSVSDHSAIICDVDMPKPCASKKILHRRPLRKINFDSWCNDIRDSAIYSSAPSDDSDCNVLCDQYNTVLNH
FIEKHAPVRTFSVTLRPYSPWYDDSLRLLKRQKRKAERRYVSSRLEIHRQVYEEKCRAYSTALNVAKRNFYKDQISGSNQ
TQLFRLIDGLFRVKPVPLLPSYESPQALAEDFILFFTTKIQHLKDNLRSSPLLTMEMSVTPAQPQCVASFPEFSAVSVSY
IRDILQQSKPKSCILDPVPTSVLKQSIDVIAPAITSIVNASLSSGVFPTSLKGGVINPSIKKQSLDREVYPNYRPITNVA
FLSKTLERVAANQTMNYLIPNGLLAKLQSAYRPFHSTETALLRVFNDILTAIDCQQEVVLVLLDLSAAFDTIEHSALLSR
MQHRYGINEIALQWFKSYLTGRTQQVLIDGVLSSSQPLRYGVPQGSVLGPLLFSLFFAPIEDVVRAHGLGAMMYADDTQL
YVSICPSEDRSSVLSRLEVCVKDILIWCTSNGLACNPDKTEIVHISSRFTSTNIIPEIDVDGHFIKPAQAARDLGVIIDS
SLSMTKHVNSICKSAYHSIRNIGRIRKYLDRNNCEQLIHAFITSKLDACNSLLSGLQEKEIAKLQRVQNSAARLIVGAKK
RDAITPILKELHWLPVASRIDFKILTITHKALHNQAPEYITELLTPYTPSRSLRSANKNLLVIPKSRTKTYGDRSFSNFA
AKLWNSLPLHIRNTDCLSKFKSSLKTYLFCKHYNN
>CiL2_gag#LINE/L2 340-1494 [Ciona intestinalis]
IHNPKFNMRSLANPNNFAKLEALIASLNFKPDSVSITETWIVENQPGHYNNLQGYSFISNNRSKCRGGGVGLYIKSNLNF
HIKQCTSIMEEKIFEPLFVTLEDISFNTTSNSSQSSSLICRVIYRSPGIDPKSNLEFRTYLSSVLDKLETRNSKCIIMGD
FNYYLINENNTNTNDFIDLMHDYCYQSSIINKPTRITDKSATAIDHIWTTINSSQIKAGIITDPISDHLPIIQAINLKIN
NSQSNISSRNFSQKNIINFNGKLADMDISKVLQETEPNLAYSQFQQQYMTEFNSSFPETKVNKSDKSKWFNKDLYLLNRT
KQKLFKKYLQRNTEENKKRYNAARNKYHHAVINGKREHYRKLFSANRLNMKATWKSINSLLGKI
>Tx1-13_BF_gag#LINE/L1-Tx1 195-2060 Big one. [Branchiostoma floridae]
MATPKSDGNDMFQKSFSIKFEEETDVRRILESFHEMAGIDVKSDLHNVWLKGRNTFEVTTNTMGKKNELMLSLKNWYPHV
EVQGYGMGTVVSLFRVPSYITEGTVQAVLRQYGKVMSVKYPTYPPPYDNIQKGIRQYRMVIEKPIPNALRINNNHIWVKY
EGQKQVCLKCNQEGHFASDCDQIRCFKCNEIGHTIKDCTNEIKCNVCGKSGHTNRECAASYARALAKPSNRWTRESVVNF
EEMSGGVSVSDSDSEGEELTDEEDESDDLVNTGCNACKEKSGFPLHVKKVCHRCDKESPSEDVHLITCKKCSEQDTFYCG
ECFHKRRTVTSESEISIYLSTSQDELDPEETTPSPETQTSSEETQLPSQEVVSEADSQRKQASSQKAQPPTRKGKVPSTS
TPSQVKSSKTSSGQEKTVQSKTPLSQDKPTPSQDIVPPSQDPTTEPTKIARKTSLSQDKSGQDLASPSQDPVQGPSNTPE
TIWTTVVSKRNRTSDSLPQPAAKKATPKSSVSSSQKSSLERIIAQKRAYEGSRLMRNNGFPMACAHFGYKCPKEELLWSS
LSLHLSNTHGLKSPTFACPVTGCAIRSPSPAKWLTHLICEHVEYVEGTTPKALERWFSKKM
>Tx1-3_CQ_gag#LINE/L1-Tx1 130-1146  [Culex quinquefasciatus]
MDKTRKNTLKMVFGNAAKVPAHVDVLRFTANVLKIPATDVHSIYRDENDRCFYVKFLDEPTFVEFTGRIEEQYRFVHSDG
QVAVVKLEVASRLFRYVRIFNLPPEIEEKDISAVLSQFGTIRQHVRERYPTEYGYTVYSGVRGVHMEIAKEIPPNLYIGH
FKARLYYEGLKNRCFYCKLEGHIKVNCPKIASLKSSTPAGSFSAIVAGAIAANATDLTLPTDMTTLTPQNKPPIQPRDPD
RGISPTPEEAGDDSEMDDDDEDEREEESGADESPDLGGDKHRKPRSSSRNVLEQLENRSRSRSLIRPEGTGGNGGKNGKE
GKGGKGGKGGKGRGRPRK
>Tx1-2_CQ_pol#LINE/L1-Tx1 1411-4659  [Culex quinquefasciatus]
MATTTFSRKLATININAISTNIKLGLLKDFVWNNDLDIVFLQEVSFENFKFLASHFAFVNISVDNKGTAVLIRKNIEFDN
MLMNPNGRILSVTIDKVHFINVYGHSGSQYRHQRDVLFSNDIIPHLSAAHPNVILGDFNCILLNSDSNGTVKNLCQGLKD
LTSNLDLIDIGNSIHRNTIYTFFRGDSASRIDRIYGPKDFLEKVLSFDTLTTAFSDHRAIVLKFNVDSNSNVTSTGRGFW
KINPSFLHDEDIKREFVLEIQNTRQRFAYNNNFCRWWIEHFKPKAKSFFKTRSFELNKFITSSKSFLYGCLREISCKQSN
NENVEKELSFVKSKLMNIEQNRLSNLKLKIQPENIIEDEKLSTFQMSKYAAKNSIMKLLINGNLTSEKTKLQLALENHFS
LLFEGDKTFYPGVNNIFNHVKNRLTLEQSNNLIKPIDLNELQEALQQASKKKSPGPDGLTYEFYCTFFDEIKNDLLKLFN
LFLMGEIPNTAFVEGIVTLIPKKEQSFEISDKRPISMLNCDYKLFAKIIMNRLQPLMDSLIGPGQAAGISEKSCITNLKL
LRNLIIKAKKSKSLKVLVASFDLEKAFDRVDHHFLWLTLEKFGFPIQFVNLIRNLYKNASSKILFNGFLTNNIFIKSSVR
QGCPLSMALFIIYIEPLIRMLYDDVRGCLIDNSFLKVIAYADDINVVIRNNHEFDKTLELINYFSIFAKIRLNVGKSQYM
RLNNCLSGPHVLKEVSSLRILGIDLSENFNTIIENNYSRIILNIKFLISIHHKRKLNIYQKSWILNQIILSKLWYIAQVF
PPNNSNIAEIRTICRNFIFKGVGLYKVKFDQLYLDVDQGGLSLVDVESKCKALFVKNILFPSQDGIKDSFMLSQQTNNTL
SRNSREWLSLAEEISNDTDLNTSKKIYRLLISKQNIKIKIATEFPELPWQNYWQNIQSNFISSEEKHSLFIMLNDLIPTK
AKLFRHKVRDTNTNLCEYCNKLDTSKHRIKLCSSSRLVWNSVKTTIIRKLGLDIVDPEELLGKTFKNEKEKLGLWLVVEA
IAYNLKNFGNGTVADFECKVREKRWNNKKFYDRVFGKWICYI
>Tx1-3_CQ_pol#LINE/L1-Tx1 1377-4646  [Culex quinquefasciatus]
MPLVRNIATANLNAINSDVKKSLLKDFIWNNDLDIIFIQELSFENFAFLNSHTAIVNISANNKGTGILLRNNLQYSDIIL
NENGRISSVCVDSINXINIYAHSGSNQKKERDTLFNEDILIHLAHGKENVIVGDFNCILLAEDMNGAVKNYCKGLQNLIS
GLELKDVEQTILKSRVNFTFXRGTSKSRLDRFYASNEFINQISCIKTLPLSFSDHHGVLVKLNLKDNAPNIFIGRGFWKL
NSFFLNDNDILTQFTAMYNGLRNRNSFINLCYWWNEVMKTKSKSFFKKISFESNQQTIREKSFYYRCLNELFEKQKEGEN
VCSEMKIVKSKLMEIEQNKLRFYRYTFRTSNLIENEKLSIYQITSRIKNSTPSKLISLRINNKVTSKTSELKSMIFDHFK
NIFCKRAESGSDNDDILEHITKTLNDAERDALSKPIELQELKDAIFNASNNSSPGPDGLNYDFYKTFFDVLNTDLLNLFN
GYLVNNEYPPGHFSAGIISLIPKKGDPHDLNNRRPISMLNTDYKIFTKILWNRLQPMMKKLIGPGQSACISETSCVNVLR
TLRNVLIKSKQTKHFKNLLLSIDLEKAFDSVDHEVLWKILKKFGLPDSFIRCISRLYQNATSKVLFNGFFTDSFKIECSV
RQGCPLSMALFCLYIEPLIRMLFESVKGCLIGDCFVRVIAYADDISLLIRNDHEFDKALELINYFSIYAKIKINTVKSQF
LRFNNCSSGPHQIKEVDNLKILGIIFHRNFDTTISENYKDLINKLKYTISLHHRRKLNLFQKAFILNTYVLSKLWYIAQI
FPPNNKHIAEIRRICFKFLWQGYFYSVAKNELYLPIYKGGLALEDVEAKCKSLFIKNILFFKTNSGSSVDEFMIAQSNNR
AVTRNAREWINLAIELKPRTVLNTSKLFYNYFIDQMSIKPRMQTEMQNLQWDLIFENLDKKFISSDTKTYLFSLLNELIP
TRSKMFRHGIAGIDSPNCILCGNLDTITHRIKSCDKSTVIWNWIKNLVIVRIRINTRDPEELIALQFNSKSYKKNAGLWL
VCEAIRFNLMNYGLDGMGCLEKFKKEIRDARWNNKAVFAKYFKNVLNIF
>Tx1-8_CQ_pol#LINE/L1-Tx1 1396-4653  [Culex quinquefasciatus]
MFLRSICTININAINSLLKKSLLKDFIWNSDIDIVFLQEVAFEDFGFLPSHTAIVNISTDNKSTAILVRKNINFDNVLIN
PNGRLSSILIDDINFINVYAPSGSNYRNERNSFFTFDIIPHLSFTKKNIIVGDFNCILLPSDSNSSNKNICSGLQKLVTS
LNLHDIEHKINQKTNFTFIRGDSKSRLDRFYAPLELINNVRSINTSAVAFSDHHAVILKYKVPDNIPLQTRGRGYWKINP
SLIMNEEITADFKTLFENWKKQNMYINNFNFWWNDSTKSRIMKYFKSQSFLFNQQIHREKNFFYTCLNEIIEKQSVGENV
YNELCLVRSKLLEIEQNRLNNLSLKTSSGSILTDERLSLFQISSRIKNQTENYSFKLRINGEITNEHCRLKQFITSHFNS
IFAADNSDQNNDNVLSHVHKKLSVQDQMSLSKPIDKDELIFVLKEVAKKKTPGPDGLTYEFYSHFSDILLDDLVILFNSY
LVDGVNPSRDFKKGIISLIPKKGCDQYEISNKRPISLLNSDYKLFTKILANRLKPLMKKIIGPGQTACNIDKSCVDNLKT
LRNIIIRAGQTKRFKGLLLSLDLEKAFDKVNHSFLWDVLKKFDFPEPFINCLKNLYKEATSKILFNGFLTDSIEIKSSVR
QGCPLSMALFVLYIEPLIRLISDNVRGCFIADTFIKVIAYADDLNIFVLNDHEFDTVLEMINYFSIYSKIKLNVNKSHFM
RLNNCVSGPRLIPEKDALKILGVYFENSFSRTVKLNYDSVIQKLKHCLKLHSSRHLNLIQKIWILNTFILSKIWYLAQVF
PPNKVHIAQIYSSCSMFLWNNHFFTVTRNQMFLDVSDGGLGLVDVDLKSKALFIKNILFSYPDADDPMDRFMMAQCQNTS
LTKATREWLSEVSRIALYQDLITTKSIYRFLQSEKIFVPKVVQENPDLDWKLIWENISSNFLTSNSREALFLVMNDVICT
KSKQFRNNVRGVENNICDFCNSIDTTEHRIKYCTGSVIVWIWLKNVLNVKLKIMIDDPEEILATDIDSKDSRLKAALFLI
GEVISFNLKHYGTPSLGKFEQSLRDTRWNNKKLVKTQFCNFLNIL
>Tx1-3_XT_pol#LINE/L1-Tx1 939-4316 via tfasty with L1-53_XT_pol, 1 stopcodon. [Xenopus (silurana) tropicalis]
MTLRISSLNVNSVRSTARRGLIYNILMSVVFDICFIQETRLKNNNDVFCAKREWTLGPSYWSFGLDEYDGIGVLFKTSDF
SIDKIIEIHPGRCLLLDLTKNGTSYxIINVYGPQKIADRKDLFSKIKPYCFTSKVLVVGGDFNCVVSNTDRTRNHVLQYD
ENFLKKLLCQAGLVDSFSFFHPRKRGFTYRKAKCASRIDRLYINKQSVLSGYNLIPMEVSDHDMIVMSISLDDPKPYGRG
IWKLNSHSLDDEKVKQEFYSFYNDRRTTQFLYDNTSDWWENIKSDIKLFFKSRAKRISNAKYMRYMALRLKLSRLYSRIN
NGEIVDSSYITCIKNEMKTLQYDRMDSLKAENKFDSWGFLGPDPFEACKQRVSKKVISGLYDSDGILRTKHEEIKNIVTL
YYKDMFNGKEIDPVKIEQYLGDVSNPVLDQESASEMSLPITEDEVKLSIKSLIDNKSPGTDGLTSEFYKVFSELLVPDLV
ALYNEVLREGKLTDSQYVSVLVLLAKKGDLNELRNWRPISLLNTDYKILAKILFTRLSKVTDALLSPYQSCAVKHRSIHD
VLLLVREVIEDARNNKDNLYVVGLDQTKAFDRVHHAFLYHSMKKYGIPDVFIQWLKVLYKEAVSLPLINGSLGTSFPLRA
GVRQGCPISPLLYDYSIDPLLRRINGNRGIQGKEVCLRGRSEWVKACAYADDITVFLHSAADNSALREEIVYFSDVSNSE
INKDKSEALWVGEEGKVFAIPYERKESIKILGITFGSADMVHKNWEEKLEICSDKVRSWRNWKWSYRKKIQAIKRFLLPL
FIYTSFVFPLPDTLVPKITSLFFQFLWGNRLNIIKRNVAYLPRKAGGLGMLCPQLFFNLLFLFKNLSFLQNDKECLWGVL
FKKQINEFFRVWVIGDKIKRMVGKYKQCAGYAQQCIHVLIKWQILYGEFLQSDRKKLYNSLLGKYYSVELALRDCPSSMV
PNALRNINCPRVPGKMRDVIWLCFHGKLYVRANVKCKGINERNCPRDECPGELETMSHFLYECPFSRKVWGELAKDLKLP
HLKAQSYAQLVYGDFKQPRDLNKNTLFVLNAIVIYHLWNARSLKSAKQIFLSIESVKRLIFNDLRDVYVKETDTDYWKNM
DLSFLF
>CR1-2_DR_pol#LINE/L2 979-4008 [Danio rerio]
RPTRVKTIDSTCATPPSKDTDKALEYFTVLFYFTLIFCCQCTFIMCFLIPVVTNTRKTREVRCRRNPHNLRSIHVSTISQ
LSLSVGLWNCQSAVNKADFITSIATYSDYNLMALTETWLRPEDTATHATLSANFSFSHTPRQTGRGGGTGLLISKEWKFT
LIPSLPTISSFEFHAVTIIHPFYINVVVIYRPPGKLGHFLDELDVLLSSFSNFATPLLVLGDFNIYVDKPQAADFQTLLA
SFDLKRAPTSATHKSGNQLDLIYTRHCFTDQTIVTPLQISDHFLLSLNIHITPEPPHTPTLVTFRRNLRSLSPNRLSTIV
SDSLPPSRKLTALDSNSATNTLCSTLASCLDRLCPLASRPARASPPAPWLSDALREHRSKLRAAERIWRKTKNPAHLLTY
QTLLSSFSAEVTSAKQTYYRLKINNATNPRLLFKTFSSLLYPPPPPASSTLTTDDFATFFCTKTAKISAQFAAPTTNTQD
TTPTPHTLTSFSQLSESEVSKLVLSSHATTCPLDPIPSHLLQAISPAVIPTLTHIINTSLDSGLFPTTFKQARVTPLLKK
PNLDHTLLENYRPVSLLPFMAKILEKVVFNQVLDFLTQNNLMDNKQSGFKKGHSTETALLSVVEDLRLAKADSKSSVLIL
LDLSAAFDTVNHQILLSTLESLGVAGTVIQWFRSYLSDRSFRVSWRGEVSNLQHLNTGVPQGSVLGPLLFSIYTSSLGPV
IQRHGFSYHCYADDTQLYLSFHPDDPSVPARISACLLDISHWMKDHHLQLNLAKTEMLVVSANPTLHHNFSIQMDGATIT
ASKMVKSLGVTIDDQLNFSDHISRTARSCRFALYNIRKIRPFLSEHAAQLLVQALVLSKLDYCNSLLAGLPANSIKPLQL
LQNAAARVVFNEPKRAHVTPLLVRLHWLPVAARIKFKALMFAYKVTSGLAPSYLLSLLQIYVPSRNLRSVNERRLVVPSQ
RGKKSLSRTLTLNLPSWWNELPNCIRTAESLAIFKKRLKTQLFSLHFTS
>CR1-17_HM_pol#LINE/L2 879-3967 via tfasty with CR1-11_SP_pol, 1 frameshift.  [Hydra magnipapillata]
MTYKTIDFESLRFNVFETANNILNDFCDVDTQIFQVNNFDSPYFNIKNFKTELQTFKNNFMAIHINIRSINKNFDKLKHF
LTDCNYSFSMICLTETWCSDESIQKNSNFQIPYYKLLSSERKADKRGGGIATYIRNDQAIKARKDLSISDSSCEVLTIEI
TNSKTKNILVSTCYRPPEGDIKKFSSYLEDIFLKINREQKKLFCIGDLNIDCLKYKKFPNATTKLFFDNMFQHCIFPIIN
KPTRITPNSISAIDNILTNAFQDSSLKTGIVKTDISDHFPIYFSINQDTRINNNSKTKIYIRKTNKISIQKFKDTLSIVN
WDEVYKKCNLEDTNSAYNTFIDIFFNHYNSYFPIEEKIVKEKYLNCPWITSGIKKSSKTKQKLYIKYLKNRNEVNLSIYK
QYKNLFEKIRKNSKKIYYSKLLQNTNGDIKKSWNIMKEIIGKKNTKTNTLPDRIVVDEKEYNDKSSIAEHFNSFFANIGP
NMASKIQCPNTYFETYLTNQQSELKFNGLDYDELEAAKNSLKINKAPGIDEISSNVVISVFPVIRKPIFEIFKSSITTGT
VPDKLKIAKVVPIFKSGEQCSLNNYRPISILSVFSKLLERIVYNKLYKYLTINNILNKKQFGFQKQHSTEHAIIDLVNKI
NDSFDNNKFVLGIFIDLSKAFDTVDHAILLKKMEKYGIKNVALHWFESFLINRQQCVIMDKNTHSKLLKIKCGVPQGSIL
APLLFLLYINDLPKVSKKLDAIMFADDTNLFYSSTSIAELFETAGIELEKLNTWFKSNKLSLSTEKTNYILFRHQSKKKK
SIPIPLPSLKIENKFIERTKATKFLGILIDENISWKAHINLLNTKIRNNICMLYKARPMLPQKNLKLLYFSFIQTYYTYG
NIAWASTHRSNLVALYRHQKHAARIVFNKDKFTHAEPLLKLLNALNVYKINIYQNLIFMLKYKLGLVPLHFSEEFFKCNR
NKYETRGIGNFKVPYKKTKLSRFSISYRGPYLYNKLIAKNTIITKLLNHNSLKTLLKKLVLNLNNFTNVY
>CR1-16_HM_gag#LINE/L2 1-507   [Hydra magnipapillata]
ESLNFQETTIMEKINKITKRYEKEINNLNKKTLDLENRSRRNNLRLDGIFEKPNENWNECENAVKEMFKKQLKISNEIII
ERAHRIGQPKEDKKPRTIVLKLLNFQDKTKILNATKNLRGTGIYVNEDFAKETMESRRMLWEEVKKLRLEGKYAVIKYDK
IVSREFRK
>CR1-18_SP_pol#LINE/L2 1370-4387 [Strongylocentrotus purpuratus]
MCVVSMSEKQSYVQSLQSIDLQTIYEYLSPENNENGYNYGPSQSFYTPDEFNDYSKTKLKNYSCVFSSLHCNCRSMNKNF
ENLTIFLNTLDVQFSLLGITETWLKESDCFYNIDHYSFLGNGREAKRGGGVAIYIRNDIDFKSRADLDLNTVHFESIFVE
ISNFTKNIIVGVIYRPPNQSVQSFIESFDEILNIVKKENKLLYLMGDFNLNLLKVTSCKRVNEFLDVCMFNNIYPLIHTP
TRVTNHSASLLDNIFTNDLEEIFAGVILGDVSDHFPVFSISNLQLQIKKEHASVKRDFNKENSQLFVNEIMNVCWSVENH
DANEAYNDFLQKFLNIYESCFPIKKSVKKKFKNKPWFNKPLRKLCNKKCYLYRRYVKKPTPERHEKYKNFRNKVTEEIKE
TKRAYFKGKFQNAAGDMKNTWKIINGVLGRGVKKKVLPSSIQCNDAMINGTAAMCNAFNKYFVNIGHTLSSSFVNSGDCM
QHVIKNNSSAFFTPCTPKEVINIVSKLKNGKSPGFDGVDITLVKNVIHILCYPLCDIINLSLNTGVVPDKLKIAKVIPIY
KNGSNDNLSNYRPISILPIFSKILEKCVYSRVYKFLEKCNIITPKQFGFRAGHSTSSAITEFIHKVTNAFDNKEIMIGLF
LDLSKAFDSLDHSILLKKLECYGFRGIVLEWFKSYLSNRKQYVVLEKCESQTMAIRCGVPQGSILGPLLFLLYVNDICNV
SKVLELILFADDTSVFMSHQDIVSLQNMFNTEFAKLVDWLYINKLVINIKKTHFMIFTKKHIDVTQIKVKVKESVIEHVT
HLTFLGVTIDDKLNWKEHTGVVCNRLAKHVGVFYKLKFLPKEILMILYNTLILPHLNYCILVWACSSMQNTNRLLILQKK
IIRIISHSQYLAHTLPLFYNLNFLKVNDIYVYQCAIFMYLCFKKLLPNTILQYFQLNKNIHGHQTRISNNFHIPGVRTLV
SQNTIFFRGPKIWNDIPIDIRLSPSLNSFKRKFKLYLLRQYSIVQ
>CR1-25_DR_pol#LINE/L2 2-2791 Fragment (ca 100 N-terminal AA missing) [Danio rerio]
SDLRLSVFGCSETWLDGSVLDSEIEIANYSLIRRDRNRNGGGVCVYIRSDLSFNVRNEMNNASIEAVWVNVLLPKSKPIL
IGNLYRPPDQSNFYELLDESLNDFVKTHGSEIIICGDLNTDMLNVDAVLYKAFKHFSDFFGLKQIIKVPTRITPKSQSII
DLILTSDSDKISCSGVIECSMSDHFLVYLCRKVQKVKLMGHNTVLVRSMKNYSPNLFCDILDKVDWSGVWGSKDVEAAWD
CFKDLFSNALNKIAPYKKIRVKQRSDPWITDEILQLLKIRDESFAKFRKDSDCSSYEFYKLKRNEVRNKIREAKRVFFKD
KINENKFDPKKLWGVLRNLGYSNAKSRKSSKINLKVEDKLIVHPKDIAESFNQYFILLAKKLCGQLPGQPDIYNEDRVFS
FYRQQDILPDSFSLRPVTESEVLKIISELKLNKAPGVDNIPARFFKDSVKVIAPLVSHILNLSIEQGKIPCDFKSARVIP
LYKKGSTLDMINYRPVSILGVMSKILEKIVHEQIVNYITKKHILYELQSGFRALHSTETCILHMTDKIRRAVDGGNYCGM
VLLDLQKAFDTVDHQILLYKLKAIGFDKVSLKWVQSYLHDRNQRVDIKGILSAPLSINCGVPQGSILGPLFFLLYINDLK
IACSEELYLYADDAAILVSHHDKRALEEIMSSQLKSVYNWFLDNKLSLHMGKTEAILFASRVKLKKDDNLVVKINDWKIQ
SKNVINYLGCLIDNKLSGDAMAKKVITKICGKIRFLARQSDLLDVHSLQLLAGALIQPHFDYATSFWYSSCSQNLKEKLQ
KAQNKLVRIILKMHPRAHLHKESFNKLGMLTVSNRVCFLKLGMVRKMFNNVVPSYLMNYFQMVRQQHSYSTRSWDFNICL
FKFRSLVGKNMFLYTSAIMWNKLPKAIKEIKDLRLFKKAIKRWLFDEDN
>CR1-21_SP_pol#LINE/L2 1274-4222 [Strongylocentrotus purpuratus]
MDDNVQDYLDHVVSDCKYMDCSDFQCNNLSKISIMHMNARSLFKNYEDFLVFLSCLKHNFSVIGISETWFKQTTNTCMFD
IPGYSLLQVCRSNKRGGGVLLYVRDGIDYKLRTDLSGEHAGFESIFVEIAIDNVKSIVGCVYRAPDNDIASFIHSFDYHM
QVIGREKKDVYLLGDFNINLLNCDSDGRVKDFVDFLTSFGLFALITKPTRITSTTSTLIDNIFTNCIQDDFDCGILCSDL
SDHMPIFSINKGKSLSNEKVNDTVFRRVITNERVQRFKQDLLTIDWSLLYSLIDVDDSYNYFLRIFGNLYEFHFPLVRLS
RKKKCKKPWITQGLLKSINHKNKLYCKYIRHKSEANRKKYIDYKNTLTNLVRNNKKSYYGDVFKSTQRDIRKTWFHINDL
LGRGKKDPIPDEMYHGEIHLNSNLDKAEYFNKYFINLPARISREIPPVQTLFEDYLLPRDNPSSLFFRPTTVHEIVNFVL
DLKPSKSSGSDDISPRVIKDCMHVIAGPLCDIFNKSMSQGFVPDKLKIAKVVPVYKKNDRKCIENYRPIALLPIFSKILE
KLVYKRLNEFLLLNDVLIPQQFGFRKNCSTTMGVLNLVNTIICAIDSGNYCLGIFLDLSKAFDTIDHDILLRKLNHYGVR
GIALNWFKSYLENRLQFVVVNGAKSQSSNVKYGVPQGSVLGPLMFLIYINDIINSSQLFTYSLFADDTCLLYSHKNVHSL
MQSANTEICRLFTWFCCNKLLLNTGKTQCVIFRSRGRKIPENIHPLVVGGQQINRSQHVLFLGVTVDEYLSWKEHLDKVC
TKVSRSTGVISKLRYFLPQYTLVTLYNAIIMPHLMYCNIAWGHTFRTHVHKLQVLQKKVVRYITNSEYKTPSTPLFLQLH
ILPFDELVSLNCLIFMFKCQSLQYTFLTNVFVENSSIHHYHTRQSSLVHQSYARTHTALKSFRTVCVKKWNKLPLNIISI
TTLSRFKISCSKHLFDRLLSDT
>CR1-13_SP_pol#LINE/L2 600-3736 via tfasty with CR1-18_SP_pol, 3 frameshifts and 1 stopcodon. [Strongylocentrotus purpuratus]
MPIEPQDIHQLLSPTTEEDEEYGPNSFCYTSEEFNSCLNTFNSHSKVYFTSSYLHINCRSLNKNYSCNMFALMKNMDQIV
FVIRLNTFNSHSKVYFTSSYLHINCRFSNKNYSAICSLLDAIDVQFSAIGFTEIWIKEADPFYNFNNYIFLLNVRQGKKG
GGVGLLLNDKLKYKQRKDLDVNNECFESMFIEIEKVKKNVLIGVIYRPPNQPVQSFLDILEDALNVVHKENKDIYLMGDF
NINLFDVNSCQSVNDFLDLLMTHFLYPMIHCPTRITDRSCTLIDNIFTNNLEEVWCGTILSDVHVSDHLPVFLINKKQCI
QNEDNNFVLRDLNEENIGKFMHEIYNSDWTLCSNDPNYSYECFLRQYVCIFNKCFPLKQCVKSKKYNNRWFTKELRKMCN
KKCELYKKYLKDPIEYKKDKYNKYRNMVNGKIKKAKIAYFKAKFRNASGNIRKTWKLINESLGKSTSKHNMPDSVMCNDQ
AICDKKEICSVFNNFFINIGPSLTDNLDNNLDNDFSNDDIYSNIDFNSCTAFFNPITPTEIINIVSKLKNNKSCGHDDVS
VKLLKKVVHIISCPLSAIFNISLSTGIVPDQLKLAKVIPVFKNGTKENVSNYRPISILPVFSKILERAVYNRLFMFLNKC
NIITECQYGFRPGHSTSNAIMHFIYNVLKTFENNHILMGLFLDLSKAFDTLDHTILLKKLYYYGIRGVTLKWFESYLENR
TQFVQINKDKSNIEKLRCGVPQGSILGPLLFIIYVNDMCNISDKLKFILFADDTSVFMSHSDVQVLQNVFKQEILKLSNW
FLYNKLVLNYDKTKYMVFTNKNIDFNNIHLRVNDHKFERVDNLKFLGIVINHKLKWHEHINVVCNKIAKNIGILYKVHFY
PLNILKMLYHTLITPYFNYCIVAWANFNKIDMLRLLKLQKKAIRIITHSQYYAHCNPLFCKLGILNVIDMHNFYIAVFMF
SCFNGNLPTFLSTCFNLNCDVHNFNTRNALNYHLPKIRTTCMKNSLFFKGPLIWNSIPQEIKKCKTLNLFKIKYKQFLLN
KYNNQY
>CR1-4_NVi_gag#LINE/L2 420-1415 [Nasonia vitripennis]
MLRDLLEKQKSDTNTVKNKTFAEVMSYSKTSTRSKRVPSIIIKNKSAHTIDQINLFVAHYLNKDKAIQTKKVHKKKDEVI
VNCLNEESTSKAFSILKKKLADECEVNKEKVENPKVKVVGINNFENLDDKKLEEDINERNFSKFSKKCIVLHTYKNNKTN
LQTALIEMPAELYQSVRESNNKLFVGYQNCRVYDYCNIKPCFNCGRFGHNGLKCNNRPICFKCTGNHKTRECERQGNIMK
CPNCIYSNSKYKTEYKTEHMATDSHECKILQAKIRKFIDFTDYTMQPILPRYVGMAGATTVKAAGWRNIGMSTASINTLN
DNIPNKGRNKN
>CR1-4_DR_pol#LINE/L2 2-1699 [Danio rerio]
LCNSFLTFFETKIKNIHHQLHSNSSAPDFSQHVSEIITHFSFDTFTLPSTAEIVGHIRKSKTTNCLLDPLPTCLVKTCLP
SLSTLITNIIHKSLDSGSVPSLFKTAVITPVLKNLELIHPIWPTTDQFPNLPFVSKILEKCVASQIHNYLSINNLFELFQ
SGFRPNHSTETALVRITNDLLLAADSGLLSILILLDLSAAFDMVLHEVLLNRLASLGISGTLLLWFKSYLEDRTQYVQIK
DFKSRSQIVTTGVPQGSVLGPLLFIIYLLPLGHIFRKYNIQFHCYADNTQLYLSTKPSCSFPPSALSRCLAEIKIWLSAN
FLKLNSDKTEALLIGTKSVLDKADNFTIDIDNSTIFPSVQVKSLGVILDSTLSFEGHINNITRTAYFHVRNITRLRPSLT
TNNTAIFIHALVTSRLDYCNALLSGLPSKLLRQKLQLVQNHAARVISRTPSHEHVTPLLYQLHWLPVKYRIDFKILLLTF
KALHNLAPQYLTELLHIYTPSRTLRSANNFTLVPPRTRLSTMGDRSFSSMAPRLWNSLPLDLRSSDSLHTFKSRLKTHLF
KQAFL
>CR1-5_NVi_pol#LINE/L2 1509-4384 via tfasty with CR1-73_HM_pol, 1 frameshift. [Nasonia vitripennis]
MEAQINLIEEIQNSLNEQERIYRDVETFNKDRSSNNDLILYLNIRSLNANFEKLQILLKSLKIKPYVIVCTEVWKLTHYQ
YYRIKDYKLYYNHGDINKNDGVVVYVNENVKHTNDTIVIGKLKILNTIISLNNKKQLEISSLYRSHGLSCIEFNQNLKIY
LDQKKNVKNHIIIGDFNINIQDYNHISVEFLNNLLENGFLPGFTNTTRPTNITTNEGTCIDNIFIKTDFLNTKSLTLMTP
ITDHYPLFLELKNRTLKQDNKQLEGDFYRYNYKKLNNTAKQINWTKFKNTKDPNENINEIIKEIQYCMEKSKYKKPNLHN
SKKTPRKDWITKAIVKSCITKETLYNKLKQHPDNEELKENYKQFVKTLDKVIKAAKIDHEKKTIEKNSDDPRKLWACINS
KIGKNKNKTETTISQLKTEDNTIITNRIEIANKMNEYYCKLGETLSNKIITPSNKKLELPKSNPKTIYIKPTNESEIIKI
IDNMKLKSGGIDKISARILKTIAAIIADPLAHVINQCIEMAIWPDMLKAAEVIPIYKAGKKMIMGNYRPISLISNIAKIF
EKVIHRRIIDFVSQSKILSKNQYGFMKNIGTKDALNMISKTIYENLDQSTPIAITFLDLAKAFDTVNHKILLDKLYAYGM
RGKGHQLITSYLNNRKQKVKIGSHTSDFENVNTGVPQGTILGPLLFILYVNDLLMNMPENSIISYADDTAVIANGKTWSE
VEVKMNKHLEDISTWLRLNKLTLNIQKTVYITFGNYCDSVPKKIEFKINHEILKRVNETKYLGLIFDSNMRWDKHIQYLI
NKTRYLIFIFSKISKFMDTSTLRIIYYAFFHSLINYGIVAWGGAYQNNLQLLQTVQKRILKIINKNTFQRANPLNLQQLF
AYESLRYHYTNFKDQFINSTSRTRNKLIILPRYNKTVSTKNSYIKAINIYNKLPNDLKIIDMRRKTNIRKIQDWLRINE
>CR1-8_DR_pol#LINE/L2 295-3459 [Danio rerio]
MWLFRLLLWIILCSAVISAAPLMYSAGDLYKLRPATSQPPLLLHNHPDLTRRPRPKYIHRGSRRNVSSTTNHDRNGIIRS
FWSNTRLPRFARRGVNHDVLSSLPRSDYMSNVTVRFMLLNVRSLSNKTSYIHELIEDKSIDFMCLSETWQKPNDFFILNQ
TVPSGYKYLCKPRCTGKGGGLALIYRDCFKICPIQIAEPTSFEVLAVLLKGPTPTVLVIVYRPPKVSALNIFFNELSAIL
THVCTLSPNIMLMGDFNIHFDNTANTQYNDFKLVLDSADLVQYVHFPTHSKGHILDLVCCSGVVPNNISSTDHLISDHKS
VFFNVSLSLGRVKPPRSVSFRNIKNIDHHVLEGMIDYSVNQCLSTSTSDLVNFYNNSLSQILDTVAPLRTRIVSYTNPSP
WFTPELRHQKALGRRLERLWNKTGLEVHKQMYSEHLASYKAEIERAKSTFYSNLITSGHSNTRTLFSTVAKLLKPHDSVS
LDPIQCVPYSNFLHAKTDXIHHELLNSVLIAPNYQYDYSHXSGSVSILSNFELPSVDFITREIMKSKTSTCSLDPLPTVL
VKSCINSLSSFITSIVCSSLSTATVPSSLKMASITPILKKTGADTNDLNNFRPIANLPFVSKILERTVAAQLHSHLLTNN
IYEHFQSGFRPKHSTETALTKVVNDLLLAADSGYLSILILLDITAAFDTISHSLLLERLASIGIADNALCWFSSYLSDRK
QFVQIKNRRSDPVSVLHGVPQGSVLGPLLFIIYILPLGHIFRSFGIHFHFYADDTQVYISTKPTTSHPPSDLTKCLNEIN
TWMTNNFLKLNASKTEALLVGSKSVLSKAQSFTLFVDNSPVNFSTHVKSLGVILDGMLSFSSQISNISRSAFFHLRNIAR
LRPSLSQQSTEVLVHALVTSRIDYCNSLLSGIPDKQLHRLQLIQNSAARIVTCSRTSDHITPILFHLHWLPVHYRIQYKI
LLLTYKALHNLAPHYLSDLLQLYTPSRSLRSSSAELLSVPHFKMKSFGGRAFSCTAPKLWNSLPLHIRQMDSISNFKSQI
KTFLFRIAFNDLLV
>CR1-6_SP_pol#LINE/L2 1778-4861 [Strongylocentrotus purpuratus]
MSLLYMMNDVINMNNTQDATINVNLMNREEGDNSDIAAFLNSTTPELQLEIDSNEIFPQHLFTGYLLEKELTSSPYSNSN
QLFASHFNIRSLSKNFDQFQLLINDLKCNHGVIGVCETWLNEMSPSSLFDIHGYRLITSNRTNKRGGGVGFYVTKNLNCE
VLVEFSHMSEAIENIFIEIKVPNKGNLIVGEVYRPPNSNPIEFIESLHALLSEKYFENKTCIIMGDFNLNILKCRDNHNC
RDFLNLMLSKSYIPLIRKPTRISDVTSTLIDNIFVNNLSSLVTSGIIVSDVTDHFPIYALISSFMTKNSDRSHTSNIRVM
SETNLNRLRERLRSVDWSPVYNHSDVNISYENFIHLLTSNLNSTIPLQKSNFSNHKKIPKSPWITKCLLKSINRKNKLFY
KHRKNPNARNKAQYVRYRNVLTSSLRLAKQLYFSRQFEKYKYDIKSTWRVINEALKTKNDTDPPKYILKNNCKIDDPSAM
AEVFNDFFVNIGPNLANTIPKSDLEFQNFLKAPNPQSLFFTPVLEIEIKTIITNLNTKKGSGYDGITNFLLKNIIDEIIS
PLIFILNLSLTTGTVPQNMKIARVVPIFKKGQKESLDNYRPISLLTSISKILERLVHTRTLNFITHSKVLCDSQFGFRKN
HSTSHALLSFIDKIAHAIDNVSHTIGVFLDFSKAFDTINHDILIYKLRHYGFRGVPLDWFIDYLTNRKQFVSVSGHDSHL
KLVTCGVPQGSLLGPLLFILYINDLRNSSQLLSFICFADDTNLFFTHRDPRTLVDTVNKELVSVQSWIYANKLSLNIGKT
HYMLFSNTLKILPNHVNFNNTELEQVDCTKFLGLYIDSDLSWKSHITNLSKVLSRNTGILNRLKHFFPSKILLSVYSALM
TLAWGNASGNLINMLFRIQKRAIRNINHVGYLFHTNNLFHENRILKLSDLFYCNVGIFMYNLSTNNLPEIFLQMFRKNRS
LHDYPTRQSNAYHLPRTRTVFAQKTIMFTGPSYWNALPLELIESPSLYTFKRKLKELLFKAYLDVNV
>Ag-L1-5_gag#LINE/L1-Tx1 121-1086 [Anopheles gambiae]
MSATGQSSIKLDFSHVPNKPTTNEVIDFITGKLGISMIQVNRIHLRTSSVSCHVDIKEQSIALDIVEKNDGKHTIQCKGV
EYPIPITMDDGSTIVKIHDASAQVTNTHIKNHMQRYGDVICVTEGVWSDAFACAGIPNGYRYVRMVIKKQIPSYIHINGE
TTLATHRGQQHTCRKCDHPVHHGMTCLSNRKLNSQKTNLMDRLKSYADVTTSGIQQKQNTLNTTTTTNTIPVEQPPQPQP
GTSGLKFIPIKQTDAMTNDNSTVTETAVNLETNKGYRSRSPSVKRQAEKKLTDFITVESKRWRTRYTKSAEDKITKGRRQ
SR
>ZEPP_pol#LINE/L1 2618-7422 via tfasty with L1-1_CR_pol, 1 frameshift and 3 stopcodons. [Chlorella vulgaris]
MTRSRSPSLRLLSLNVNGLRDRDKRRCLFNLLERDRWDIILLQETHHSSTEEGTAWAQEGPAGVRCNWSGPAFWCHFTSQ
SRGVAVLLRPTASTAAITVRHCSTTGRTLLVDFTYCGQPYTVASVYAPAAAADRQQYYTQELLPSLPAARCLLVGGDFNC
IAGQQDMAAGQPGQRTHGYWTGLRLVETEHQLYDVWRDLNPSSRAFTHVATTGQSAARLDRWLVSETLRARVSREPRAIG
QVLGYPGDHLGVSLSLTAPASTLYGSAAWRLPLHLLDDQPFCDRVTAAIPEYLAAHPLGEGVTQGSRWVELKWQVKDMAM
QRSWALAAERRASQRALESDSRAALAAFTRRPAPDTLLAWQNAHQLLQGLNVEAAKGAALQAGIVWQFYGEQSTFWFHHL
ARGRQGRTELMALRTGPAPDSPRVVLDHPAGRDRGGAVLREYYSGDEAAGLFAAQPVSLAAQDELLQAVDKRLSPQAAAA
AEGERGDGSVSVAELETALRSLPRGKAPGLDGLPYEFYLRFWPVVGLELAGMLQEAFGGGRRCPPLTQGRITLLYKGKGA
DRESLASYRPITLLNTDYKLAARAIASRIGPLLNQVVDATQTGFLPKRWAGDNVLAHLEEISYLEATHQPGVQVFLDFEK
AFDRLDRAWIERCMAAVGFGPGVQRWVHILHSGTTSRVAFNGWHTDAFPVAAGVFQGSPLSPLLFVLARAPMAAHARMLA
GQLAFQPIRLPSGEPAPVMHQHADDTSVHARTPGMLRSCWGPSVGLHCAATGARLQRSKSQALGLAASAISPGPIQSRGV
TFAASSDGVKHLGIPLSTQPAAAATALYTAIIEKVEARIARWSGFRLSLLGRAYVAKQVLASMVTYHATFIPVPQDLLQR
LCRAIHTFVAANRPVTPGAAAALFPSKDVCFRAAAHGGIALVDIKAQILALQAKVVGRLLEPEQLAWKANFDHWLYRSTA
WLAAQEPGTCQRGGSTSGSWEDSCSSPPSQRSMWRPRSAYGSTCMPTSSCGPITCGSRKRSATTQSWVSHCSSTGSSRMQ
SAALCLGGLGQAWPGQDQPPARCRARPGASGSDGARARAHPSGCLASSLESANPGAATGRYVVRISDPSDRRVCLAQPKV
APTSQPHSKQHRSLLCQWTKALQPCTHSFLRPRSLHWFSTGTSPGAWHPRSGTRQQRQHAEQLHPEQHLQVEQQTGEQQP
GEQLEWEQQLPEPLPPPPPTLILPLPLGIPGTGPSGLGARHAAGTxVCGEGGHRAATGASQDQQGGGQPGGPAATSHLGx
YHRxSAHAFGRSRRDGRPGLQLLVPASQVLGKRPRGQPDPSSWAIWMAAPHTVPVPLRDRGGPARAPAAPSPVPQGADVT
VDPAAAVTAEPISTLGSCVAKWCNASHLDRRQRVTAWRLLHGQLFVGGFARHVHRADPAGHVCPHPSCAGQLATLTHVFI
ICPLAAGVWDWFAATWAAVTGDDAPPRSADLLLADDTRIWGPPRQLRQLWDLRLATICQLWAAYQRGRHRPDAAAITPGA
VAARILSSCKKALLADWRLATVNVRQTAGVLSDWLRGRDPMITREQFAARWCHRAVLCALEELPGAQPVIHWSAQHPVPL
PA
>IseAg1_gag#LINE/L1-Tx1 gi|34392588|dbj|BAC82627.1| gag-like protein [Anopheles genus]
MKLLKPILSYVTLCGEVTGVSYRGQAQTCRNCAAPVHHGLNCVQNRQNRFANVVQVKATYANTVSAKTVAPTPQAASHTA
AGNSGQKKKKKSRSRFLSAATPAPTHANVEDQHPRDASKIAARLIIPIVPVTVRPSSPKPNSRKGKISNANDKHVAPALS
IAPTTDAVVSAHDRRFDDASSPAVPAAPVATAALAATAFAATNAASVATAAPAAITAPAANAASTAAAPAAATAHAATAS
PVATAALAAGAPATVSTPMDKDDPAAAAAPATAEVPGAVVANPAATSAPLAFKVPLDVLPAPFPGPSTDEPRTVTRKRTT
ESDVESDASSSSMNSFTMVAKRKPGRPSKKATTTNNL
>KoshiTn1_pol#LINE/L1-Tx1 gi|34392553|dbj|BAC82605.1| pol-like protein [Tetraodon nigroviridis]
MMDTLILVLFFIASDFNLSHNMESFRVGTLNVNGARVAEKRALVFDTARRKRVEVLFLQETYSDEHNQADWAKEWEGQVV
LSHLSTASGGVGLLFLRSFTPTSVEVEHVVKGRCLLVTACFNERTVVFINVYAPTNGTERKSFLEKVSARLNRCGPEDFL
IMGGDFNCTECEFVDRNHAEPHPGSQHALKQLVHSHGLVDAWRRMHADCRQYTWSRLGEDRISMARLDRFYVFKHHFNAL
KSCSITPAGFTDHSLVLCHVFIKNVLPKSAYWHFNSVLTSDKGFREALIYFWTAFRRRKSDFTCLRQWWDHGKTEIRLLC
QQYTLNVTRDACRSIRELESEIVDLEILSAFTENRGHIEALKSKKMALKDLLGTKVQGALVRSRVQNIAEMDAPSSFFFG
LEKRHGQRKAIHCLLSDTGQELTEPGQLRKRATEFYSALYSSEYREREDLFEEFCGGLPQVSEATNVRLDGPLSVSELHA
ALQRMQGRRAPGINGLTVEFYKAYWDIVAPDLLEVFNESLSSGSLPVSCRRAVMALLPKKGNLQDIRNWRPVSLLCTDYK
ILSKVLATRLREAMEEVIHRDQTYCVPGRSIVDNVHLIRDVLKTSSLLGLNTGLISLDQEKAFDRVEHRFLWKTMERFGF
RTSFIAKIQALYGGIESVLKLSFNGSLCAPFRACRGVRQGCALSGMLYALSLEPLLCKIRSSIAGFVLPGFNKNIVLSAY
ADDVVILTQNQSDVDVLSRLTDSFNVLSSARVNWRKSEALAVGEWRDGLPVLPQSLCWKRDGFKYLGVFLGDEDTEKKNW
EDIPGKVEGKLNKWRWLKSQMSYRGRVLVVNNLVASMLWHRLACLQPPPGLLDQIQKKIVDFFWDKKHWVPQGVLFLPRE
EGGQGLIHVASRTATFRLQFVQRFLTGPADLVWRETASCLFRRVSNLGLDAALFLIDSKSLKVNGLPPFYQSVLKSWALF
KNTLQKSSNSLFWLLNQPLLYNARMDISREATPGLKAALLRSRTLVFKQVVDAAGPALTDAGALRSRLGVRTTATADRAL
TLWRKRLTGTEVLLLAMYSGGMEPNPEDPFPDLYLTPRLGDTSGPLLEKARELNLHTGDKKAIYLNCVRATHRARLNHRP
PTVWSSRLGGDGGAPCWRVLYKPPIQKRTADLQWRLLHGAIACNAVVSAFSSAVSNTCPFCGHPETLFHFFSECERLTGF
FTLLAQVFNLFNVGFCERTFIYGAGYKKTSQKKWQLLNFVCGAAKLAIYVTRRNKVEGRAGQDAASVWRCSVRCRLRLEF
GFYKMTDDQQTFIDTWCFGQILCSVDNNILHLSKILNY
>KenoFr1_pol#LINE/L1-Tx1 1494-4955 RepBase name is L1-1_FR. gi|39652285|dbj|BAD04856.1| reverse transcriptase (Tetraodon Keno_Tn 39652288 92% identical) [Takifugu rubripes]
MTLNISTINVRSVRSRVRAQSVLSFLSSFKSDVFLLQECGLPFLNHYRQWEEMWPQTSLWSGSNENRNDGVAILIKNPQV
LVKGSTVVKNGRALLTHLTFMGQDFKILNIYGFNEKNDRYDLLEDLQSHMLGRVPLVVGGDFNCILSRKDRRRTGEDFKV
DKTSVLLQGICRDFKLQDCFKTMHPREEGFTWFSGDGTRASRIDYVFTRDCPATDARLTPVFFSDHLMLSCTLSLPSGVT
SGSGLWKLNCSLLEDRELVRQYREQYKEWQTLQDFYDTRAHWWEMVKGRTRTFFRQAGKEKKNRETRRMMGLQKRLQRYF
NLNQQGIDFNEEIKQVKKEMSVLSEIQSKGVILRSKEREIEEGEKCTRYFFKKIINKGGTITKLTKENGCTTETIDEIKE
TIESFYEKLYKEKHVQIDTMNEILKFLNKTVNNSVLLSQDFTLLELNNSLCSFKTGKSPGQDGLPVEFYLTFWDLLAPDL
ITVFMEFEGLDRLPDSFRVGIVTLLHKQKDKTELKNWRPITLLNVDCKLFSRLLATRMSTFLEEVIDPDQACAIPGRKIT
DSLVLIRDTICYARDRNMRLVVLNLDFEKAFDRVSHQYLFQVLQKMGFPERFVAWVGLLYRDITSRILFNGHLTKAVDIN
CGVRQGCPLSALLYVICIEPLAQILRRDKRINGVQVPGSGGLETRCILYMDDVNVLCTDLLSVNRTLDLTDWFGRASGSK
LNKEKTRAQFHGPWTATDMTGLPLTVTQTDQKILGVKFDREGGGKTNWPDMVGKVRQKLGFWGLRGLTMEGKVLITKAVI
LPLLLLISSVFFPPRSVILELERAIFYFLWGSKMEKLKRAIMKKTKEKGGKDVPDLHLFLGARFTAIHVGIVTAPSKNPK
TAAMARFWMGTYLRKLKIEPVNLSVPVSFNLPTAYSFIQRFLVHFNVENEELHILTNHRSLISVVQEREPVSPVRGLALG
EPSTVWRNVNHPALPNRLRDLSWMVAHEILPVRSVMHSRGMAAHATCPRPGCGAPESVRHLLWECSAAKDQWAMAGSLKF
PYLPAREVLTAQLVLYGVSPTVIPPKDFAKQWLTLAAIKDATWTSRNLLVRKHMQIPPVAVIRMAAAMVQGAGTAGGRPR
TPPQRRIASVPIRTKEPELHSKGQGSSGLALRVR
>VLINE9_VV_gag#LINE/L1 5-2173 [Vitis vinifera]
MKPGGRCWFGVEKKTFEINIEEQKGRVRGKICERGPKSSSWXRFGGKSLSLLLEGVESCCXLQERTPFRKFWSEGDRDYS
LELRSNKAGRFLFCVVRDAENKRFSLAFPEGGGLVGGWNLLVSKLKSLGVSPFQWKGALPQAPPNRGVDRASIPLRXCPA
PRDAVWLEADKESLVRNEEMLGRCLIGLWKGDSDRLPDLVSFGXWAKNTWLLEGNLWLSNMRENLLFLEFEFADEAERVL
NLGEKSFRGRSFRLEKWKPSVGCLKEDNGDXRLVWVKILGLPLHLWGRSLFKRFGDSCGRFVAVDENTAERRNLKWARIL
VETRDWHHPSSLQVVAGSSCFALQLWWEEEPRISTVLPSHGPGAWKRKDDEVSHSRAEGSVGFPPSSSAPSQPEKPPPQP
EKPPPQPEKPPPQPEKPPPQPEKLPPQPXKLSPPALGRDDASDKSMSTARQALACDLDLGLGLDSSAHPDLARPIGPGLG
KAHSLGNTYIPLGPASSSDLGLGTPTRSPRRRRGPPAESPQLEAPSHLEVTSANDLPPTAEGRNPQGMLSPPPPPSSGMP
SSPSSTPFLVTGSERERGCSGQXDPTSRETEETPIPLSLMLRDGSTVVLRPDPPNFAAKQKDRTDISPREEVWSEEEISN
LFHFSKVLGMPVEGHEVEILNLLEKLKLRTGNSTLCKRRKKKKSCTTRFERELKRLECSVSYGETSGXAKKSGHNSWDLV
PVD
>SHALINE14_MT_pol#LINE/L1 4-4110 (1 stopcodon)  [Medicago truncatula]
MNILFWNVRGIGNSDTRTALKNLCLSHKPSLIFVAEPMVNFAQIPDWYWHSIGVSKYCINNxGPFLPNLWALWGNELIAT
VIFVSDQCIALEISCYQSSVYIAAIYASTYYVKRRQLWANLTHFQGCFQGPWFFMGDFNAVLGAHEKRGRRPPPPLSCED
FLNWTNANILNHLPTLGTFYTWTNGRFGNENVALRLDRAVCNEEWINFWRSSTCSALVRHQSDHHPLLLSLIYSTVKHAS
PFKFFKAWISHDDCRQLVSDTWSKDVRGQGMARLQSKLNNVKNAFKIWNRTIFGDVDRQVKLAMDEVNRIQHLIDSEGFS
DNLYLQDLEAQLSLTKALNVQDELWKEKARHHQFINGDRNTAYFHRVSKIRATTKSISFLQDGDNVITDPTAIEMHILSY
FQDIFSVDNNCAQNTLVDETIPSLVSEEDNNMLXRIPXYDEIKEAVFALNADGAPGPDGFGGHFYQTFWDIVGLDVVHSV
HEFFLHGELPPNINSNMIVLIPKIPGAKAMGDYRPIALANFQFKIVTKILADRLASITSRIISVEQRGFVRDRNISECVI
IASEAINSLDKRQYGGNIALKVDISKAFDTLDWNFLIMVLXHFGFSPIFINWILAILQSARLSILVNGKAVGFFSCSRGV
RQGDPLSPLLFCLAEEVLSRAXSTSAARGRIVPMSYCRGISLPTHILYADDVLIFCTGLKSNIRWLLRIFHNYSEVSGQL
INNAKSRFFTGAMTGSRTNMIANLLGFSVGSVPFQYLGCPIFQGKPKVIHFQMIADRIKMKLATWKGXILSIMGRVQLVK
SIIHGMLVYSFHVYLWPRRLLRLLDTWIKNFIWSGDVLTRKVCTVSWKVLCRPWDEGGLDLKPTRLINXALILKLSWNLI
AQDSQWSHLFKSRYFSNGQPSMRYFKSSVWSGVKLHIGTVMNNSLWIVGNGDNINFWTDNWLGEPLVDLLNIDADFHAHI
KGMLSEVIVNGTWXIPAAIADFGDIKERLDVVILPRTHLPDVLVWKHASDGVFTSKLAHSFMRPPSHVWPWAASIWXACI
PPSHSFIFWRLSHGKMPTDENLQTRGCIVVSVCSFCLKPAETSDHLFLHCNFAFRLWTWLGVKLNCVIDSSSVDSLLDCR
PVSCSSQVSDIFVAAVXHTIHTIWWARNAVRFSXXTPTIHAAKIRIHSFIAMSGNVSKGKCLLSYFAFLDSFAVSPHCRS
VKDIILVFWKPPSSPWVKVNTDGSVIGGNAACGGLFRDXLGTFCGAFSCNIGIQTVFEAEVFGFILAMEYAAHKGWRHIW
LESDSTSALLIFSNPSLVPILLRNRWHNAQVLGVQVISSHIFREGNSCADKLASLGHEITDAVWLDTLPARVCLDFFRDR
CGLPNYRFPFVFGGLCFSLFSLFCFXFC
>RILN8_OS_pol#LINE/L1 1416-5008 via tfasty with MIUSE1_TM_pol, 3 frameshifts. [Oryza sativa]
MNSAMRNWNVLCWNVRGLNSDDKWLAIRNKIEESGCAVFCLQETKRSSFDHSYIKKFAPKRFDKFAFSPSVGASGGILVG
WNSSVFGGSVLIERFAVKITFTSNHSGLVWTIVSVYGPCTGPERNNFLSWLHQLNIPDDDLWLILGDFNFYRSVTNRNRP
GADMNDIFLFNAMISDLGLVELPLKGRAFTWSNMQHSPLLEQLDWFFTSTAWTLTFPHTLVKPLARSTSDHTPCVVQIGT
DIPKADIFRFENFWVEHDGFFDLVQSIWQNHGYEGNAAKNISVKLKALRKGLKKWSKSLSKLQLLIKNCNAVIAFLDSIE
NLRDLTVLEWNFRILIRNKLLLYLKYKQIYWQKRCTIRWAKFGGENTKFFHAMATESYRRNAIPSLVDSSGLVCTRHEEK
AHIAWSAFSSRMGCSQFEFMPFQLQELFHANQSLASLDQPFGISELDKIIQNLPIDRAPGPDGFNGMFVKKCWPIICQDY
YRLAAEFYSGTLDLDPLNHSFIILVPKKSVPEGINDYRPISLMGISLKILTKVLADRLQKVILEIISQNQYGFIKGRTIQ
DCLAWNFEFLHQCHHSRREIVLLKLDFEKAFDTIEHEAILLVMEAMGFSATWLGWIRKIFSSASSSVLINGIPGKNFHCK
RGVRQGDPLSPLLFVLGAELLQVIVNRAYAMGLLSKPFPSDFDPNFPIVQYADDTLLYLKASGKELFTLKALLQTFQLGT
GLKVNFNKSCLIPINVDEGKAQNLAAVFGCQLGSLPFTYLGLPLGTTKPKVIDFAPLVDRIERRLTSNASFLSYGDRLTL
VNSVFSSLPTYYMCTLMLPKTVIDNIDRARRHCLWRGSEVNSNKRSLAAWDKVCKPKRKGGLGVLNLTIQNHALLIKFLD
KFYNKKDLPWVNLVWSAYYGNSVPHLTNLKGSFWWRDICKLMDVFRGIAKCNLKSGNTCSFWYDVWDDQPPLFHTMPRLC
SFAQNQNASVSDFLSIEAEENFTLPLSAQAFQEFQELTSSLLDHELVNENDVWSYIWGNMKYSSQKFYALNFRVIKPPVH
FLWLWKCKAVSKVKVFGWLLMMNRLNTKFMLDHKNCAPPDCDLSCVLCQSAAVEDLMHLFFLCHFAQNCWSLLGITWDTT
LSLEAMFIRAKLDYQGSCFMEKFLYAAWHIGSKEMGSFLAKDPSFITWRQLLKGDLFLLLFRISARYHDVIISWINGL
>SHALINE16_MT_gag#LINE/L1 324-1169 (fragment) [Medicago truncatula]
MDPVNLNLAGLTLSEEGLTLNLESEPETAAVLEHCLIGRVLADREIQFAYFSERMSRAWKPGKRVTITKSVPDRFLFQFH
HRVDAARVLEEEPWLYDNYHIVMDRISPGVVPSCVPLNHIDFWVQIHGLPFGFIQPKVGQGIGSFLGTLKTYDDRNTIHS
SYMRLKVAIDVTIPLKREWRVRASNGSFVTINFKYEKLGVFYYRCGLLGHTDKVCPELFELEADDGIRHWGVGLKPVTQS
LGTTATNRWLHDPIPAVAPKPSQVLFLLVVKLLLALVILHLS
>TREP52_gag#LINE/L1 109-2875 merged ORFs and matches to CIN4; several stopcodons and frameshifts [Hordeum vulgare]
PTSLTAVESLPVALLLRLPPAMASVGTRSGDSSPDGRIRWSGSTGESSDSRSYREVLSSPPAPHGPLSPAAPRPAPCLLG
HGAAPLDRAGHPPXXXHSEVHRASGGPVLDADGFQQPRKRNRHPRVRRAATPPSQRRRRSPSPEEVAGLCFRCLEGGHRV
CACTNPVRCCRCLISGHESNCCETRLPGDHPAQPQAVHRQVPNSPLRNLPPRLHRDAAXPRNAAPPQPPAPAPARITMAR
SIKMEEVEEVLAHGMVATITGTRPSVSPADVEASLHAMFDLQPGDFTVHKHAPEDFLIIFSSRLIMDRTAGEHLLNAACF
SLLLRPWCKLAHATAGSFAYSVQLELRGILPQAWHLSTAEHIFGTGCWVERLHPDTRSRADLAVFRLTVRVRDLASIRRE
AILELVEHVPADRPDLPPAFRTLEYPISIRLVQSAALPRVVDDATNGNGTGDGEADGSMPDPAGHGRERGQQGRRGRKRR
RPASAPDGRADGMAVDAAGWTCSTGRLRADGKAVDPDWPARLCMRHRPYHPVTDAWMHGPRLGPTCPVAKPKEENVGERK
SAPGFRWRWPKLQPQRIPARPSRPGRPPHRWSSHPDSWQRPIGAHPPSSCCRTRKAPVVRVAXRTGGPPSRDEPTTSNVC
ASGDQDGPSSPHVAPEADLQSGQSDTLPSSAPVADLSPTALHADPATTTQEAVPTSTPAALSDLHGHLTSPSWDASGETP
CTSPSTAPLGKDDLGCPSPAAQEPRSILRRPTPASPSQSMPHSTPASHATLVRSAGRLATPPSTLLRARQPASVSSLTLG
DFLTAATKQTCSGLPNSGCKCRRQPLNFSLRRGRSAAAVKAKPGMPPTAERRAQVQILRIHGIISTDQVISAEAMKAYDG
VFAAPLSHAVLKAIAALVGRALPADTSTMPVTTVISGNPIEA
>TAR2_TA_pol#LINE/L1 77-2000 via tfasty with 31433139_Osa_pol, 4 frameshifts and 1 stopcodon.  [Triticum aestivum]
QNWSRAKFGDVGRELEKLRAELAELQSNGAAHELLKEKANRMDELLHREQMMWLERSCIMWLKEGDRNTQFFHQRAVWQA
HGSYISKLKNEEGEWYTSPSDMERMASSYFKEVFTRDPTLDVDSVLDLLNIKVTNDMNNEMLVRGFTEKEISDALFQISP
IKAPGPDGFPARFYLHNWDVMKAEVQHFFSPGVMPQGVNETRIVLIPKKQYPREHEIVSKCLVNRLRPLLDGIICECQSA
FVPGRLISDNVLIAFECIQHIQQESNPERASCAYKLHLSKAYDRVDWVFLEQAMGRMGFENKWVSWIMQCVRTVDYSVKF
NGRLLERFSPSRGLRQGDPLSPFFFLFVADSSSALILDAVGTRGLSPVAICRTAPRISHLLFANDTLLFFKASEAQANIV
ADVLHRYAGGTGQLINPEKCGILFGESCPVDVQELVKNILHVRQQEFEDRYLGLPVPEGRMCKGRFQTLQTRLAKILVDW
GERFMSSPAKEVLIKAVANAIPTYVMSVFKLPLSVCDELTKMVRRYWWGVEKGKHKTHWIAWEKLILPKNQGGLGFRDMG
LFNQALLSRQAWRLIERPDSLCTRLMKEKYCRRGNLIDTVFTGNSSAVxKGIEHGLELLKKGVIWRIGNGRSVRIWRGPW
IR
>L1-2_CQ_gag#LINE/L1-Tx1 185-1606  [Culex quinquefasciatus]
MAQVRSRENTFKVDLSNFPKRPSIEELQKFVLVKLGLAVGQVKRFQVNHAQNCVHVKCSELKVAQDTVAMHNGKHVMEIN
KTKVTVRLVMEDGGVEVKIHDLSENVTNDDIVAFLRHFGDVLSIREVSWGEGFPLRGMSSGIRVAKMILRRHIKSFATIL
GESTLISYRGQPMTCRHCTLTQHIGMSCVENKKLLGQKADLSARLKSASGSTSTSYASVLNGVAPDTNTLLPEFSGTILG
PVIPQRPIRPESTGTAPNAPQSGAATSATGHSADGSLNISGDGTSSVQTSGSTDVAEHSAGSEASGGGTSSEVSNTLASE
TEVSAGSVATAIEGGALIDRPNESELASTSDMILIPLPPAAPAAEGDNKETEEMETESPSAADDAAELNTPHPKLPCEEE
DAEMPAVSDLASCESVSPFEFPAPIPVPIPHPDLKKTHSLSSISGTESEGSARSGEFTEVKKKRRPGRPKKPKV
>Tx1-1_NV_pol#LINE/L1-Tx1 1470-4996 [Nematostella vectensis]
MCIINLNLMVMLTYICFTMAFSVCTINVNGIHEAPKREKVFSALRSMNCDVAFVQETHISTATEEQHWEKEWGGPAYWSC
GSPHARGVGVLFKPSFNFKFVSLKRDTEGRFLSVLIEVNKTHFSLNNLYAPNLPAERVAFYGNLWRLSHPGVPAIIGGDF
NCVSNLALDKWGGSALSGTLGYPALHTFLERFRVLDLYRSYSPSGTAVTYITPDRRVGTRIDRIYAPEPFMQGGSCTVRP
FPFSDHAAVHARLTIPDIEPAGRGVWKFNVSVLQNEDFRKSVRAFWPSWQQKRPQFPDRRVWWDLGKFHLKRLAIAASVR
LSKEKRHHIAALEREYQRLNTRGADVSRLRAIKQELEDAQTRVLEGVKVRSRAQWLEEGEKPTRYFFGLESNNRTKHSIT
ELHTSSGRTASNTSDILAAVREFYTTLYTAETTDPEAQDSLLSRLDARLSEEERSSLESPLSEADCREALTQMKRNKTPG
DDGLPAEFYLRFWDLVGCDLVDTLNSGYDHTHLSESQTRSILSLLFKKGDRLLLKNWRPISLLNVDYKIGAKALANRLKP
VLASVLSPDQTCGVPGRSIFENNFLIRDILDYAETKRLPGALIALDQEKAFDRVDRYFLDRVLEKMNFGPVFRRWIKTLY
NGSKASVCNNGWLTSFFPLQRGVRQGCPLSPMLYCLCAEVLGNAIRKDPQVTGLHLPQSKATVKTTQYADDTTLLLRDSY
SIRRAFALIGTYERASGAKLNATKSEGLWIGSSRGSDQTPVDIKWQRDKLHILGIWHGFGDLTEFNWAPRVEKLEKTLTL
WRSRTLSLKGKVLITNVLGMSKLWYTASVLRMPPPVATKVNKLVWDFVWSGKTPQVSREKCVQPREKGGLAAIHIQSKVK
SLQLKWIAQVANPDNNAPWANLARYWTSRKLGIRKEWNWLKGNSAPVAAPGKRPRVYDDLLQAMAEIKPWLASAPLRALK
VKNIYSEFVALLPNPSKAQQTWEDRLRLPGIPWFSVWRNTYGGLSTNWESDLLWKIRHRVVRTASFLTSHMHCTFSPKCH
RCGRTETLKHVFLSCDFATRVWDWAFPIAERINATPLTRNVNNVILTLGLSTAKGDKSKTNLVVYIFKLILWCLWTARNT
SLFEKRQAEIVSVAKYKIRERIERDAAVLGPLAAYSRWGINDVLCCWRGEALSVL
>L1-N6_CQ_gag#LINE/L1-Tx1 98-1006  [Culex quinquefasciatus]
MSKYRRNAVVIDYNVLPVRPDIESVSKFISNDLQLDLKRVKNLQLNNSRNHVIIELGSPEEASDLAERHNLKHKVGCRGK
LFRIPIFLEDNSIQVRVHDLPPHMPNEIIATHLEAYGEVNSIRREVWREYFPGIPNGVRVVRMVLEKPIPSFIKVEEEVG
YILYNQQVKTCRHCAKPLHHGKKCDENLALTPTTTTTTTTPAAQLLAPTLPALSPPVSTPSATAIEKEIAPEKTLPEIAP
PTTTTFLPSTSVKNHQTTPSDQTMDISPEDDDDNETAKTVKPKRRSRRKKPWDPHWNHLYDDW
>Tx1-1_PM_pol#LINE/L1-Tx1 2415-5146 [Petromyzon marinus] 
PSDSPGLPGRSLEIPRRDQREEGQSGHCLGSMEGQQGNKGLCDSSRETPCQAGTRVPGQGEGKAEIFPQTNYKVGGHGGK
EQAMPMYIGSLNVNGCREAVRRFSAMSLARKHAASVFFIQETHLTVEDEDDWRKEWGGDSFYSHLDNTSCGVATLFAKGF
HPELITHTEVVKGRLLAVTVRVGDVTTHLLNVYAPVTNKEKIPFLHLLRRHLAGIPDDECVIVGGDHNCTLGALDRSGGQ
PGGVGPKREMQGLLEDAALVDVWRIHHPGQRQFTYTRTRRDGSVTQSRLDRFYISKSFVTCAITSGIRAAPFTDHNLIVL
RVRLERAREGASHWHFNNSLLEDGAFLEMFEDFWEEWRKTKTQFDSLAQWWDMGKVHTRLLCQQYTWGSTRLKNADITDM
EARVLDLEGRLAEDSDPALLREYEENRERLKGLQEEQTRGAFVRSRVKLITDLDTGSPLFYSLGRQNGRRKSMECLFDGD
GVLVHELQQKSTIIRDFYGSLFSPEETSEPAQAEAWSGLPTLGEDGKELLEQKLTRTDLDAAVRGLAPNKSPGLDGLTGE
FYAAFWPSLREDYREVLEEASVTGVMPQSWRRAVLTLLPKNGDLRHLQNWRPVSLLNTDYKILTKALSLRLKGVIAQVVN
GDQSYTIPGRTIHDGIFLVRDLIAVSQRLGIPIAFLALDQEKAFDRVDHKYLLGTLKTLGFGDAFVRTIRLLYTKAECMI
KINGALTAPVKFERGVRQGCPLSGQLYALALEPFLSLIRRRLSGLVLREPSVKLVLTAYADDVLLILRSLDDVALLHECQ
EVFSKASSSKMNWQKCSGLLVGAWDMTECPEKAKAINWSTTSLHHLGVFLGPEEEPPQRNWVELEEKVKERLGTWSRLCK
FLTFRTKTLVVNQLVTSMLWHRLFSLHPPM
>Tx1-2_AMi_pol#LINE/L1-Tx1 2411-6358 Tx1-1_Gav_pol and Tx1-5_Crp_pol near-identical.[Crocodylidae]
MAVTTIASLNTNGCRDPVKRTAVLEGLQQKRLAIAFLQETHSDVHVQADWHAAWRGRLFLSHGTNLSAGVATLLSPQLRY
DSAVAREVVPGRLLTVHVTLAHQSLLLVNVYAPTDGRERVAFLETLGDLLRDASEKDDLLLVGGDFNCTVDALLDRTGPE
PHLPSARKLRTVLEAADLVDAWRVLHADARQYTWAKMSASGLAMARLDHLYIGQHHLPLLRSSRIIPSGLSDHALVCCEL
SLPGRARTRAPYWCLNVSLLQDTHFRDCFAHLWRSWEAARADYSSWRLWWDMGKVQIRAFCQQYCQLAASELRRRTQELE
EDVAELEAALLHAGNDAALLESLRSRKKCLRELAEGAARGARVRARCQELAEADAPTGFFFGLERRRAAAKTLDHLKTPE
GRLLTDPGEVRGHAVAFYRDLFAAEPVCPQAAQQLHQDLPRLGASQVEALERELSLAELEAAVGGLASGRAPGLDGLPVE
FYRAFWPLLGPSLLRVFRESLADGTLPTSCRRAVLTLLPKKGDLGCLKNWRPVSLLCADYKILAKALANRLRTVMASVIG
PEQSYCVPGRTIQDNLFLLRDLLTAAELFGLDVGVVSLDQEKAFDRVDHRYLLGTLEAFGFGPLFTAALRVLYHDASGLL
KVNGVLCSPFPVRRGIRQGCPLSGMLYALAIEPLLHALRRRLTGLALPPAPGPTTGPPIRLTAYADDVTVFLGSQEDVRA
LVDCQRAYELAASARINWGKSDTFLLGTWAGTPPPDLPGGLAWRREGLKALGVFLGPPAFAARNWEDLAEGVEARLQRWR
LPALSYRGRVLVTNNLAAATLWHRCAVLDPPPELLERLQRLLVDFLWDGRHWLPRAALYLPTGEGGQGLIDLASRVAAYR
LQALQRLLYAEGHLPWRQLACRFLRRVGGLGFDRELFLLDLTFLNGAVLPPFYRSMVRAWRAAFHLCPQARHLRFPQLLR
EPLVYNPALQRVVPSLASASLVAALIEARTTRLEHLLDPARSDWLSPEALAARLALRSVRTAGRLLRAVRAALPTEAATA
LEVYLQARRTLPAADAAHDAFPPLPVIPAVPSELAERPNTLLRLPVPPSSNTGCPFGTLPRKGLYVWVVRTRHAQVLAGR
PDTVWRRRLARPGTPAWRTLYKAPTAKKTGDLQWRLVHGILATGTFVRHLDPAASAACPFCPGVLDEDIFHAFLDCPRLQ
PLFATLGALLRALGRDFSEDVYIHSFPYRAAERAAVSLANFLLGQAKMATLKSRRNRLTGTGMVDALQLFRLLVRARLSL
EFEHAVLRRTVPTFEERWALEGALCRVEAGRLLLAL
>Tx1-2_AMi_gag#LINE/L1-Tx1 468-2300 Tx1-1_Gav_gag and Tx1-5_Crp_gag near-identical[Crocodylidae]
MAASSQGTWHGDVSADLPLSHGLRVHAPLHVRVEDCAGALADLLGRRSVRYASRVNSVPIVYLSSPSLVREVCAAGLEIS
GVHHLVTPLETLAVRVVASNVPPHLPDWDLTNALERYGVLTSPWRRLTMGSRDPKLRHVLSFRRQAFMLLRGDTQKLPPS
LTFVLDGRSYVVYFSQGGNSCCRCGGSSHLAAQCPLGQSAGAPAAAPTQEDGASTSGVGPSSKGGVGGSAKPPSAPAPSE
GLDPSGVGMPPGGGPGTSSQVSPAPVVADAPPGGGAGESSQSLPVPVPPGVASVSGAGAPSGGAPETSPPPPSTPASAEV
VDPEVANPKQPGPPPMGEVPAAPKKAKSKRQKGASKGAPAPLGPASDSTGEKVAREPEPTLPAPPETLPPQAMTEGVPET
SGNPSPPSQLVGLVSGKAGGECLPPEQQQARETAEGPATPPPAPLPAEADEEEMECLPSERRKRPRERDDICPPKRMGID
LPETVLDPDTEGGLLGSLAIEGTFTGLTGKSPPRVQPRRFSVGNIQLLLEKPPWVAPSYGGLLNLLDQTKGQRNVAESIR
QWCPDPAQFVRAASDAARLMRRDPGTRQHAFRLEKLVTRVREVWGRGGPAE
>L1-54_XT_pol#LINE/L1-Tx1 1455-4592  [Xenopus (silurana) tropicalis]
MAGKLISLNVRSIKSKIRRAAIFDFLSSLGADFIALQECGLSNEEDCECAKNDWKGGISFWSGSTESKNSGVGFLFCKNI
GDFVSFFVIEPGRAILVKVNYCGSIIRFVNVYAPVEKEDRAELLNKIYYFLPGVEPIIICGDFNCILKREDRKGQAGLDV
TSGILKNLVSDFVLQDLWVLSKKQTEGFTFESNKCKSRIDFVFGSSEFMTKDFVLVANGFSDHKMLIVDFVLRDKNIKNK
KRDWKLNADLLEDSDVVEGFKLKYAQWQKQKKKFSSVKVWWEWLKREAKNFFVNIGIKISKKKRREYNELNVKLQTMIRL
RERGFDVAEEINDIKQKIKKWIENRGREIIFNARIRDIEEGEKCTRYFFKKILSKKVFIDKMENEECIEGILKKVYEFYN
NLFAEKGCDVKIVEDFISLIEKRISVNDQEWVDREIDLEEVQAVIASCAKGKSPGCDGLTIEFYVKFWDILKNDFLEMIG
EVFRTGELTLSQKKGVVTIIYKKGEKDKIKNYRPITLLNVDYKIIAKIFANRMKNVIAEIIGPGQVCAVPGRCIWENLYI
VRDVLEDVMQRDQGIALLSLDFEKAYDRVNHDFMFTVLTRFGFSKGFINKLKVLYKNVTSEILVNGFKTEPIEVKSGVRQ
GCPLSPILFICSIEPLLLALQRDKIIKGVSVPGKTECIKSLGYMDDVVILCSNKESVNRVILWADIFNSAANFKLNIEKC
ECNVYGKWVDFENCKVKLERGNSRILGIVFSQNVSGELSWAEALEKIKKKLSMWKLRSLSIIGKVLIVKAVILPILLYVG
LVFLPNYLWMRRFIREIFVFIWSSNMEKLKREIMYRELGNGGKGVPNVQQFLELKYIQFIIKLARQDKWASYFVKYGAGW
ILNRHRWFKTDIKKPYSFSGTRFYNVLDKIIKRWDLFKYSEVELVNINKICTDWRKQEAVCPVENFNSKISKEIWNMVVN
KNLTNSQRDLAWALVHKCLPVKDFQYRRGLLRSPKCPREGCTENETCMHFIWNCKFAQRMWRDMGVVMKAITGLSYINYE
VVMFGR
>L1-2_HM_gag#LINE/L1-Tx1 100-1272   [Hydra magnipapillata]
MASYAKAASVVSSVGERIVEFKVFMDMIHANNQHYVNDRAKEIIEKINEKVGRNKIESLTYHRDGRWIAVFNSIDDAIAM
TRNEVAITNCKSPVFFRRREQYGFLITIKCDPTIQDDELTEKLLPFIESVISIQHTTYSFDHTVKDGRRLFRVKLNCMVK
ELPHHIEINGAKILLNFAGKEFLCRLCGNTHVPRERCVSSVLNSNDKKLNNMEKNSVAEKNQKIDSEKKKDTFQFSVPAS
LTSNIFLRGEVNDCIYKKNNIPTFNFLDKQSLELPNEVKNKIKNTQKEYQSAFDEARKLEKQKQEKHHPVETLVIDEDRF
TEVKSKTKKKKBKAKKKEDGEISSGSDFDADFDVSMNENINERKRIHPQTPIKEKPTTKERRNEKPKWQT
>L1-2_CQ_pol#LINE/L1-Tx1 1639-4833  [Culex quinquefasciatus]
MNLPCSYNIATININAISNDNKIQSLKTFIRSTDLDIILLQEVENPNLALPGFNVLTNVDDSRRGTAIALKSHIRFSNVR
RSLDTRIIAVTLRSMVTICNVYAPSGTVNAASRERLFNNTLPLFLQNCSDHCILGGDFNCVIASKDATGTSNHSLALKNL
TSNLGLKDAWEVLKANQIAYSFIRPNCSSRLDRLYVSGAFVPGLRTAEYLVTSFTDHKAFKVRCCLPDQGRPTGNGFWSM
RAHVLTEENLEEFELKWNRWLREKQNFNSWIEWWIRCAKPRIKSFFRWKTNEVFRRFNVANELLYGQLRAAYDNLTNNPA
MVPEINRIKGKMLLLQNNFSKAFERLNDKFLGDEKLSTFQLGDRAGRKKNSTISSIKHQGRLLEDSAEVEDHIFDYFRQL
YSAEDVQLNRDFPSNRLVDPNSEANNRAMEEITTEEIFTAIQTSASRKSPGCDGIPKEFYVKAFNIIHRQLNLILNEALR
GGFPEQFLDGVVVLSKKKTNLETIKAYRPITLLNYDYKLLARILKVRLERIINENRILNSCQKCSNARRDIFEAVHAIKD
RVVELNCKRKTGKLISFDLDHAFDRVDHTYLLSVLRSMRINENLVALIGRLMCSARSRIIINGNLSAQFPIQRSVRQGDP
LSMLLFVVFLHPLLEKLLAICNHPKELVVAYADDISIILVDETKLAEVRRAFDDFGLCSGARLNIAKTTAVNIGPQRENS
TGAGWTTVCDSVKILGVIYFNSLKRTIEENWRETIRKTSYLMWLFKPRDLSIHQKVTLLNLFVTSKLWYMASVLSMPNAC
IAKVTSQIGQFIWGRYPTRVSIDQLALPVAEGGLNLHVPKMKSKALILNRFIRGSSETPFAASFVSQLDNPPNLSGIPAL
YPCLKAIARELPYLPQRLIGQPTATELHGYFRRTLTTPKIMNEHPAVAWRSVWRNIRSRVLTSAEKTSFYLLVNRKIPHA
ELLFRQNRLDSGTCQHCLGAVEDLEHKFAKCTRVRHLWNFIQSKLGAILNRRVSFNLFLIPELNNIEANSKSRALKLFIF
YINFVLDPDCSFTLASLDFAVSLVC
>L1-3_SMo_gag#LINE/L1-Tx1 1101-4160  [Selaginella moellendorffii]
MFKGKKPLLWTARMRPRGEEGTEEMVDTRRTKMGGIGSGRNPETTARRRMNAGAGXPREELIXGKGGITVKIVANREKNE
DSNNVITTQPVGIKETEQVTVGREGXKDKATRGDAWGENPCRKSKEETRGGVMSEEKPKNPRKQSCALSTWTGKGEEKRG
GAGSKWRNDMWQPGSALFKGDLSIRRALFSVKDEGQREDKGKAVSERERKGKGEKSPKGKWEVEEGEGTEGWEKGEKERE
GKKGTLESEGKKREEDTGGKMPRARTTARMSTAGGRARGVQLPEVLDPEEALVGEVSPANVENKGKEDASEEEETPLTRA
PRRNPTNESPGVGEENAGARAEKEASGKEAAVGSPTGIKRRVKTCCPLEKGPPCFKAIREANARKEQEARRLAEEAAKRL
LEEEAEREKEKAVKERQEKEARQERSDGMGQAARTYEAPLGQELHDRMREDKGKGKLDEXRQWEASSSRGIREELVPEVV
ISPEGKREPETGYPKVLPQYSKMSVCPDAPIVPFGPPPVKIEEIMPPRKPTRMPFGPANDVLEVDQEEFMEELNKLQARR
AEETIHVIVEGAVPAGFVVSDWVCAALAYHDMLVTVLAEDVKDLGEKCYNVVIKDERARHKLLRVDAYAQLDFQLFFRXY
HNNFTPQKKRMLLPPSVIVNFELQGMDVALAEDKILAAILRQFATFIRMEGMPVGDRVTVKVRIPKEVHIPFEIELKPGK
GQGPRRIRVMLLPNPSVCIICRRTGHIGKHCLARGASVGGMQETGEDRQKANSGSEGKKRGARGERETTEKAASSGESKK
PRTKGQKEEGQGEQSTAAKQEKXQSGASRGKEWRPTGRXFEGQAVGEAKGPDTEVEXVQDKGEXPPQQATQRVPGPVEQE
QQQSRSRSGRTEDFARGNCPPGFTPPRRAVCEIELYVSGTNPPKFLGEWIDNRVGYAPPAILISPGQDIGRTLEDILAYN
FNWNPQRFSIREDNFVEQAPNSFRFRGTVRIPFAWPLRPMGPYHWVERQRLGSARGFRNG
>L1-7_HM_pol#LINE/L1-Tx1 672-4538   [Hydra magnipapillata]
MESIKISVNICGLNDKNKQNVVITKFQEMNYDIIMLQETHLSKNNADDFLLKWNQLGFFSIGERHSKGTLTLINQAKNNL
KLIEHFADDSGNFNYVIIENQYHKYLIINLYASSGTSFKHERERKFLFKKITEKIKKLNYQNYVTILGGDFNMVLSDIDK
YPSIFRKQCSSSEYLKALLNTLNVEDTWRIFNPQSLEYTYKSTNNITYSRLDRIYLSNHMRQYIDIYHEPMTHSDHHNAV
HAHIKINNFKVGKDIWILNNNHLKNKSFKKSITNIINSHTTIINTSTYKNDEWDNFKTNIKIFSRKFSKDEAKNRRRKEF
TMKKQLKNALKKAHLNPHMKNLSQNLKTNLENYEKKKAKGAAIRAKIDWRFQGEKCSKFFFHLEKEKTRKQLITNINDSN
GNEHNNTPEIIKSFHDFYSKLYKESKNSVIHQTILLENTDIIKITEQQRQTLDQTITLTEVKAALQSMKSDKSPGSDGLT
AEFYKENFDTLGETLLIVFNNIIKENELPNSLKQAIITCIYKKGNKSDIANWRPISLLNTDYKILTKIISNRLKHILPYI
IKETQTACIHHRTIFESLSYTRDIIHIANEMKLDASIISIDQIKAFDRVDRTFLFDCLSAFSFSNSFINIIKTLYYDINS
RLKINGFLSEEIKIHRGVRQGCPLSMSLYIIQAEIFAGYIRNNSQIKGITINNKETKLQQYADDTNFFLTTDDSIKALGE
ALALNKLATGTKINANKCQGIWLGKNRNGNKENYLNFSWKEHSFKCLGVVFSNTNFSHSKQWDECTNKIEKKIKSWKRFK
LSFKGKRIVINQSLLSSIYHLAFTIPLPNDKKIKSIERLTEKYLWDNSTIKTKKEISKLSIEKGGLNIIDIQTKLKSIQL
SWISKLFDQQYNGAWKDAASYILNNYREANQGNQVFFTSHSNDSLKTLPLFYSQMLKNWNSIYSQCDNVDKLSYEELLNQ
PLFYNPYIKHLNTSLKPTPNTEKNNITKIADISKVFVPGFLDYQLVDMKPRQISIIINSLPPQWKLRINTETQKYDHNKA
IPYLYSKNNRPIPITELKPKVLYKILNTQKYDKTTVNLSKWKHYFKKSMSNITDEEWVKLFLTTXKNNTNNKADEIRYKL
IHFKLPTNEIFKKRGYKINELCPQCMKTKENLPHMIYNCKKVQPLIKYSISLINKIYTQIPHLKNTFKTFLFAPSQILFL
CNIGRIIINECLYKIYCNRQRSFHENKKFSRIALLVEFQNRIKKILNEEYQFARENDSLEAFLKEIKQIWCKRNKTLKLE
LDINRFLN
>L1-4_HM_gag#LINE/L1-Tx1 108-1433   [Hydra magnipapillata]
MASCVNRRETVFFKTNDDALLPLMDNQRTEEISVILLEKMAKASAGESIEQVEISYSSDEPSDDEDEDKPKNKKQPKNYA
EAAKPETKKRNLPKTLICEIEKHFTLNELLKAIEDENLDEELEGAQFLRRNTAIEIVMKTNEAKIKLLENGLYINNYHHV
FKISNNNRRPKTEGKRLNQTHVSVFGLPIEAKLFDIGKHFEEIGYGRHVYTKPVMRTTPGKGTPYYSGILVAVMEDMPKP
MPTSLNILGYKIRTKHNGQEINNLIERRQPCDTINENSSTIIHQQLTYERETSNSKPEEIPSNVTNEENINKITDTNKKT
NNIIENEEKTNKEEEKKQPTKPKNETQHEKTKEEERKTLEKRRKEYYFDKPTTKEAEEQKIHTKDVEESKRAEDTNEKSR
EKMDEDNTWQKKRSAPPPTPYKNDRKKRMGTSKESTTLENG
>L2-24_NV_pol#LINE/L2 2-3270 via tfasty with CR1-42_HM_pol, 1 frameshift. Basically complete. [Nematostella vectensis]
DECEKPVIKNHKRCICTTCVAFTHAKCSRIFDVKLIKAATPKEWTCPRCLLSELPFHVVPQLDSSDMTEIAADGSFDAPC
CADVTPTVNNSLTSELANLPPYVLPDLIEENKHLETLRKCNTKDILLCHININSIQNKFEELSRLIKKLNVHIMFVSVTK
IDSSYTNNCFALPGYSIHRDDRKKGGGGVIAIVSACLTYKLLNITKKYKTIEPIAIQTKIKSETVTMLCPYRPPKPLTGN
YQILLENELSDICNWASLQSNNVILVGDLNLNRLRPDKPEGKLLPDLETEQGFLCTITKPTRIEMRANKLTLSLIDVLLV
NKPETIKHSGNYYPSLSDHALVYGILNDRVNPNKPKVISFRSYKFFDCDDFKMQLNVAPWHVGDIFDDVDDKVYFWSSLF
QSITEEAAPMERMKVRDKDVPFMTSEWKQAIRAKRKATSKFLKNKTPENWENKRAARNEATRQRRIAIKHYWRKQCEHLK
EKPREFFKTFKPFLSSKNTTRDNEIHLNDVDGTLVKDQSRVAEILVDYFSTIADGIGGDKAKLSSPDDFMDHPSTIRILD
VCSNTTPCRELRPVTEGQVLKELHSLKPGKAAGCDAIPPKLLKIGETELAKPLTSLFNSCIKSKVWPGSWKLGDWTPVFK
KDEKYSKENYRPMTVLPCVDKVFEKLICSQVAEGFERHFFTNSSAYRKSHSCETTLINLIEGWKKARDNKLSVSILSTDM
SKAFDSLHPPLLLSKLKAYGFQENLIALLGSYLSERNNRVRLGRHVSSYKNINRGCPQGSALGPLLWNIFQNDLCYHIDG
SLSMYADDHQIYHTGSDLSTVISDLRVSADHASQWYDSNLLAGNLKKYQVLHLTGNRRKNADANAALYVHGEIINDTNEL
KLLGVTIDDQLNFSTHINEICKRASQRAGVLMRLRNLIPTNAKLQLFKSAVLPHLTYCHLVWHFCRSSDKRKLERVQERG
LRAVFKDKSSSYANLLERAKLPTLLNRRLQDIAILMYKVHNNLCPPNICGIFNRHSANYNLRQADFSLPRYNTTTYGKHS
LRYLGPKLWGKLSVTIRSSPSLNTFKRKIREIDISLLIDDGTKCCSLCKN
>L2-20_ACar_gag#LINE/L2 16-1833 Unlike anything else yet.  [Anolis carolinensis]
MPNRKKKVALPIVQGSQDDKKDCKRKKTSPKPVGESILLKQSYLEDSAAARQAQASRTPEETAITLTNRFEPLRVGELTP
LPDQFHKARDIYLSPEREDLQIPQVPQSPQVFQVSRASVDLHEGTTNSPVRFLDLNAILDLPKPLEENLKGPDRSNCSDD
QRPGQDGGRSDSRLVSLLFAEFNQLADQLNRFGRLLCLLNHPSAQSLDYTQGRTIWNSLDPDPQNARDLAWAQNRDHPME
PSSILRRASLETGEPFESPMMSQDALSMPKGEILESASHGCLFGGLCPLDLGPTNPCPWSGQGPPGTTRQEKDWPSLPEM
DALDVTEILGRVPVSPSVPPFCGSPQRRRCLSLSKRQAPKMAADLGDAIGELMPSSPNPKKLRHRRAGHPDWRQKRCHDM
RRTSGEKPEQIIFLAEGVPGTLQSAGLAAGQDGLTTDSGEPEAPDMDKYTMMGTGKPPNRRSQRRGCHQKKFKTRIFWGV
GFGNRTRPATTPFSHKLANVPPSGSRSVNMEKGARPQNTSTWDSSIRTVDIKERVTSRCGGVKNLSQHSRGNLDLTSPRS
PPHPQCWPGVLAFTPAPHYFEGSIYDHLVIGHAPPPFQGASRTLGT
>L2_AC_10_gag#LINE/L2 1322-2347  [Anolis carolinensis]
MIDIGMAETESRVKNDLSHLYDLLGESFNLLLLQLKILNNKMDHIFSGLVHITRTSVQSDLPRADNPLCADLPKDLCSNG
EEGSLDLGLEGGMDDEMTEGRGGLLGMXGNENILDWRTTPMDIQRTTANLISDPIAQPTAVSTQDQHLLMTDNFAVDIAD
LRINRGRWTSRRAVCDSLAQILSKRPWEIRLKAITWLRRDYQSLDRSTCLLITPEDNLWLGELLAMRSCLKKWGITIRRV
VVDPHIRPLIDTVVPARLFPSGPCNKSTDSSPVRAPPPGLYQFETPSVPVVPTQSATLSRPRTLPLFSPLSSLDGSPSSL
TSEASLPEAQGRLYSSLTSSES
>L2_Mars_pol#LINE/L2 277-3246  [Metatheria]
MMNILTPGHTLHIPVILNSCRSSSKPHSPPPTTRFLIPIPLNPPTPKFXPNXTQPFHCALWNACSIGNKLPFILNLFLSH
SFHLLALTETWLPPDDTASLATLSSTGCTFTHSPRLTGRGGGVGILLAPHCHFQVLPLPPSLSNLSSFEVHAIHIYHPIK
ILVAVVYRPPGHSPSFLNEFGTWLTIFLSSPTPALILGDFNIHIDSPSNTLTTQFLNLLTSHELLLHPTSATHKDGHTLD
LAITHKCTTSMFKNSEIPLSDHNLLAFHLSLCLPLQNPTLHPHHDLQSLDPSILSQAISPALATLSSSPHLDPLVNQFNS
TLSSSLESLAPLSYHRLCPAKPQPWITPTIRRLRSYTRAAERRWRKSHNRSDWVHYKFMLHNLNWALTAARQSYYTSLIN
SLSHSPQQLFQTFSSLLKPPMAPPPPTLSAENLASYFTEKIEAIRHELPLLPSSSSPITQMPSATISSFTPVSHDEVALL
LTKANPSTCSSDPIPSRLLQQIAPSVIPTLSLIFNLSLSTGSFPTAYKHAHVSPILKKPSLDPSIPANYHPISLLPFVAK
LLEKAIYNRCLHFLSSHSLLNPLQSGFRPYHSTETALSKVTNDLLVAKSNGLFSILILLDLSAAFDTVDHSLLLDTLFSL
GFRDTTLSWFSSYLSDRSFSVSFAGSSSRSCPLTVGVPQGSVLGPLLFSLYTTSLGDLISSHGFNYHLYADDSQIYLSCP
NLSADLQSRISNCLSDISNWMSSRHLKLNMSKTELIIFPPKPSPPPTFPITVEGNTILPVPQAHNLGVILDSSLSLTPHI
QSVAKACRFHLCNISRICPLLSSDTATTLVQALITSRLDYCNSLLVGLPASSLSPLQSILHSATKVIFLKRRSDHVTPLL
NKLQWLPIASRIKYKXLCLAFKALHNLAPSYLSSLLTPYSPXRTLRSSDTGLLAVPRTRHSISRLRAFSLAVPHAWNALP
PXLCLLTSLASFKSQLKSHLLQEAFPNPS
>L2_Ele3_pol#LINE/L2 1887-4814  [Aedes aegypti]
VDVIHVSDFNANVPLNSNFTLNSVLPHPAQTKEVIYEKNINMHYFNYLQTKTFLEKFSRIFLKIGVHNARSLSNNIDNYR
TFLEKSEINILAIVESWLKPSITNKSVELNGYKIVRSDRCNSKKSRGGGVAFYLKSNTKFSILRKSGKDSDVDYLFIKLN
LANLVCGVVYKPPDVNISKLDDIFNIVSEISSTEPNILVMGDFNINILNYNSPQTRRLIDQLSSLSLKLIDTWPTCHKSG
CQPSVIDLLMGNCTGNICNAYQSSLGGISDHDFICVDYRFKISKSKPEVYWARDYHKINNETFLSDLRDCSFDRLYYCSN
VNEKLNSFNEIIFSVLDKHAPLKKKTARDPVSPWIDNHVRRAFKNRSEAYECWKRDKSNRGKWNNFKCLRNLANREIKRK
KHEYFTSKLNIDLPAKQLWNNIKRLGLKQVNTKAGGGDVTAASLSTYFISHFVPETFVENPGGIDAQSRFSFRGVTSNEI
LTEFTLASCDSVGNDLIPLNVLKMSLSVTLPYITDIINCCITTSEFPEIWKVAKVVPIGKTDNPTVESEYRPISILCALS
KIFESIVSKQLNEYLVSNKLLSPLQSGYRKSCSTITALIKVENDVREALDKKMITVMALLDFSKAFDTISHHLLCNKLKF
RFKMDSLSVNLIYSYLSGRSQYVDFNNTMSDKISVPCGVPQGSILGPLLFSMYINDLPLVLSFCKFHLYADDCQLYISES
IXNLNDSVQKINNDIQNILNWCVHNGLILNAKKTQTIIFSNKRMKVINPPKVKVDNDFIEYSDVVKNLGILMDCKLTWND
QVNAVCCKVYKALHSLVALRKCTPQHTRFQLARALIVPLFDYGDILFSLVSNNNFRKLNHAFNTITRYVFNLRKFDHISR
YVNLLLGRSFNNHLSLRVCTQTFKILNNPPSYLENFFSYTRSPRTPLLVVPRSASGNLKLSFRHRAISAWNKLPRNCRSA
RNYSSFKNNIELFYNS
>L2-9_NVi_pol#LINE/L2 1787-4551 via tfasty with L2-4_NVi_pol, 3 frameshifts. [Nasonia vitripennis]
MGMFRQCLANARPSYHLFGVAETRFGSEVDDVFAQVDGYSVLRQDRNKRGGGVALFISNVFKATILCSSQSEVEGKPGIP
EYLMCGVQQGNKPPIFVAVIYRPPGVSFSDNSELANNLRRYSAGYDYRLVMGDLNANMLSTSHDAEFVRDLACELNLKLV
NHGATHHVRDSHTWIDMIFTDDDNVVLSASNSPANFRSSHTIIDVEIYFQTTEPPALNSLTYRDFKSIKSDELLSLLAAC
DWSSVSCSDSGVDTRLEHLSQKLLTVIDQLAPLKEFKPRQKDYPPWVDAELRHLYSRRDALKRRHKHARRGSRRRDDLWT
EYQALAAEAERCTNQAREEFIQNRIFDALENNKNVWNELRSLGLISKAKEDLHGFTTDELNTHFAGVSISDAEREVDLSG
ILAEANEDGFTFREVTFADVVLAVAHFSSQAKGEDGIPQSVIAKSLPVLGHLLVTLFNASLSCGVFPGAWKNAHLVPLKK
KPIPSTVSDFRPIALLSFLSKVLEKIVHEQISEFLASKNILDPFQTGFRHNHSTQTALLKLTEDIRTGIDSDKQLLTILL
LGFSRSVVLWVMSYLSGRNQRVVTKLNGESSWLTTNLGVPQGSILGPLLFSIYINDLQEVLAGFRGPKGLLTDSVAHLLY
ADDLQTYTQVTRDNLREGVDRMSAAARAVSDWASHNALHLNTGKTKAIIFGSEYNVNKLQGLNLPGVEVQTGVFVPFVDA
VTNLGVVMDSKLTWKPQVDAVSRKVNRALYGLRSFRSCTNEALRKQLAGALVISHLDYCSVVYLDVSGELETRLQRLQNS
CVRYICGVGRYEHISPYRRKLGWMNIKERRTVFHGGVNVQGAQHGATAVPFGPLEKNQCRTSGRSSRDITVPGTRTDTGL
KSYRVQGARLWNSLPRGMRTLPSLSRFKLAMRNYLLPTLSET
>L2-2_Crp_pol#LINE/L2 1-912[Crocodylidae]
QCLPLGGQGARNLKSVIVQPLLKKPSLDADSPSSYRPVSNLPFLGKVIEQVVAQQLQAHLDAIGFLDPCQSGFHPGYSTE
TALMALVNDLRLEINRGNCALLILLDLSAAFDTVDHEVLIKHLHDLVGICGTALNWFCSFLAGRSQRVVMGECSSSPRDL
SCGVPQGSILSPLLFNVYMRPLGETVQRFGVRCHQYADDTQLYLSSSDPGPAVSVLSQCLAAVGDWMQVNQLKLNPDKTE
VMVVGRPLTWGGLGHLSLMGFSLPCLMGSSGGSVARSTFHQLHLVRRLRPFLSDSIWPPSSMPS
>L2-1a_Cis_gag#LINE/L2 100-795 [Ciona savignyi]
QARNMNTMESALMKKLEELDTALAHIKSKQDKYESNCSLRPDTAPPVPVSDSTHPKELQEIRKSLNDLEASLKDLKAVVR
DTDERLDNLEQYGRRNCLIIHGCKRXPQXNFISYVLSILNRLKLPYTISKAAIDIAHVLPSKRDSTPIIVKFVQRMVRND
VYDSKKHLKGTGMSMTESLTLRRLRIVEKAREAFGFRSVWTNNGVIFTVHQNTRRVIHRLSDISSILARSK
>L2-3_Cis_pol#LINE/L2 941-4204 [Ciona savignyi]
MTVKYPCRICNLPCKSNQNSIACDICNYWLHAKCLNINEHDLANFATDQLPYFCPVCMEENVPFQAIAQNTFIETISSHA
MHSDYFQCIKNDIRNSYVENETIESISSSEYYTVDKMTELNRNNDFCIIHVNVRSLQKNYDKLYQCLLEASILPDVIAVT
ETKIRHSMSNGMLNINIPGYNFEHADTPTFAGGVGLYIKQSLSYTMLDTTMCIAPEQCEHLCIKVRNMDKSCIVGVFYRH
PSAIFSLFQTSLSNLIDFLNPSKCNLYLCGDFNIDLIKCSTNHNINNYYNTLCSCACKSLITNPTRVTPHSATLIDHIYT
NDYKHEIISGILITDISDHFPTFIIIKSKNQHVKPSKQYFRNMSNFNEENFLDELHNKLSREFPQNLLNIDGPSVNTIMA
SLLCELEELINKHAPLRPVSNRILKLKKKPWLTKGLLKSIKIKNHMYHKIMRMRKLNLGSEHDFSQYKVYRNKLNHLIAS
AKLMYYRNRLHLYNKNTAKQWETIRELVTFKSKRKCGPSVIIGENNEIISDSFQISNKFNNFFSTIGSAMASSIPKSNCP
PQQHMKWASSSLFLYPIVPDEIHNLISNLDCKKAVKQSDIPTKFIKLSASVLSPILADIFNSCIQTGTFPDVLKIAEVIP
IHKTGATDRCTNYRPISLLSQFSKLFERLLYNRLYDYLIKFNLLSPHQYGFREQCSTANAVCDVYNQLLLNSENKFYSCC
VFLDLSKAFDTVDHQILLGKLNYFYGVRGTPLLLFKNYLINRYQYTYVNTVKSESSMITCGVPQGSILGPLLFLLYINDL
PCASNFKTKLYADDTVLFLKDKSLNELETKTNNELLKVTEWLHYNRLSLNHSKTNYMIINPFKYCSTTDFKVVLDGTNLK
RVNSVKYLGVYIDDKLNWNEQIKCLEKRISKYCGIFYKIRRYLDIRTLRLLYFSFIHSHLQYAIICWGAANKTVLKPLNV
LHNKIIRIITSSQRSCSVTPLYQKLYLLKLNDIYDLEVGKFMHKLFNNTLPQPLQLLFKKINTVHCYDTRQTKTTVYFHP
SFTTNFGTKTILHNGIKVWKLISESLKHASYSVFCKQLKVQLISNYI
>L2-8_NVi_gag#LINE/L2 1292-2590 [Nasonia vitripennis]
MGALRYCTLPSSMLTLFSNQFELIERSVDDLKTLLVRRLDAISQRSDPAPAALEMIDRLVERVSSLEEKIEKQVSKLEDL
QNDRLLLSQENKALRESLDDAMRVMHRVETRINADDGGSCTSRNLSRNLSLSLSNSSNKISNDNDGDSSSADICIAEASR
VFVSLRDCESVDASGGAGASTSADTDGFRVSKGRRHTRARKRRGEGREHSAGVRSSPTDGMSSGESTAEIIISSISDCSE
QERGDVAHAVLATVLPSVARDDIVSARLLRPNTRVATVGGRPSPWVVRLSSHLIVKNIMRAKHKITGLNTRHINVSHLSQ
ETSNSLVQSKIFINELLSKESFLQFKSLKSVASGLGFKYVWHRGGRFLAKMRDGEMSHHFQTAXDLQAIAASYSCTTSND
NLVNNVTAVHNGNAITGTAPCTGSLDKDSKKN
>L2-4_NVi_gag#LINE/L2 1105-2313 [Nasonia vitripennis]
MLDLFSNQFDLLERTVGDLRTLFVGKLDAISQRSDPGPAASEMIDRLVDRVSSLEEKVVMQNSKLEELHDDRFLLSQENK
ILKDKLEELTRVMLKVENFVDGARSGRDDGSSNTSPSNSTGGDANNNNNNECDFDASRVFVSLRDIESADANGGAGASTS
TDTDDFEVCKSRRRIRGRKCRGRVCEHSAGGQSSSTDGLSSVESTTEIIVSNIFDGSEQERGDVAHAILSTVLPSVARDD
IISTRLLRANDDSRRLSPWVVRLSSGAVVKEIMRAKHRITGLNTRHINVSHMPSETSNSLVQSKIFINEMLSKELFLQFN
SLKSLARGLGFKYVWHRGGRFLVKMRDGELSHSFKTAADLHAIAASYDCAISTKNCVNSGNVRDVDAASLDSQTVTSEKT
SNN
>L2B-3_AAe_pol#LINE/L2 1686-4487  [Aedes aegypti]
QSRRATDVVLLNIAGITSHFNELEIIVSRQKPKIVMLTETHLTSDIGISEYAIKNYHMICCHSASRHTGGVVMYIHEQVK
FHVVDNSTCGSNWFIAIKVVKGLKVGVYGVLYHSPSANQQEFLLHLEQIWLERVIDDKVINLIGGDFNINWKNVSDKRKL
QNLMQCFNLNQKVNDITRRTIRSQTIIDLVFCNDDELNVTINQGNKISDHETIQIQFNECSEPVEDYITFKCWKKYSKAA
LISLLRRSMSDNSERELDEKADILSTLLKENINKLVVIKSIKCNSRKKWYTIELKSLQLARDDAYRKASTSWDEADWRQY
KVLRNEYAYSIRKAKAEFTQRKIEQNRGNSKQLWKTLKSLWKSREKPPIRLTFDGEVVENDHEICERFNSYFVDSIQQIN
SSIEDVPNCFEDESDHFAETWNVFHRISYDVLCRSIHKIGSSSGIDNVNLQVLKDSLEVTGEYLLGIINESLEQGNFPRS
WKQSTVVPIPKVSGTTKAEEHRPINMLPIYEKVLEIIVKDQLLEYLNEQKILISEQSGFRQNHSCESALNLLLYKWKRMI
EEKKTIIVLFLDLKRAFETISRPEMLKVLKKYGIGGQVLKWFESYLSSRTQICQYRNSTSVPKSVPFGVPQGSVLGPILF
ILYINDMKKAIKHCDINLFADDTVVFIAEKNEKTAIRKMRDDVELLSKWLKIKKLKLNVEKTKCMIISNKKQLNYTELKM
DIEGIEVERVNVFKYLGVYIDDKLKFKEHIDNVIKKVARKYGMLVRLGSQLTFWSKIFLYKTLVAPHIDYCSSVLFLASD
THLSRLQRLQNKFMRYILNCSKYTPILGMLEALQWLSVKERIVFNVLTIIFKLTNNQMPEYLTNIIERGRNIHTHQTRRN
YDLRVVPFTMTSTQKSIYYRGIRIFNELPNEIKHAQSIAEFKRKCSNWIKNRYR
>LOA-5_CQ_pol#LINE/LOA 436-2109 [Culex quinquefasciatus]
MMNELDPKRSANCSQQLEKTEEKEEVKKGKESAVIEEKIENMECGGVDDGDGDDLEDQLGDLGLDGGSSVSSSVLDSPQR
SMEVDAPEDQSAGPGIPPGDNDSLHSSGDTSGSVTPTPVDPAGSNRKRRKPGKPKLTNAQLRRMDYFVRNGHPPKEAREL
ALVPVEQNYLNKRQRSKDEPSPNSSGQGKGPDKKRIRNRGSEGPAPPPAAQAGMISYKEVAEAIHVAVIPLGYPAKTLTT
EELKAIRTQLLDLIIKLETPVVRPKYRNCTFKYGYLILACADEATAGWTKEVVNKLQPWEGAELVAVNLADLPKQVLFLG
YFQDSLQYTSEDIIRLVQNQNDDFRTEQWKVARRTEHSKTIELLIEMDEKSAEQVAAQHFQLNYTFGKARLRKVTGSTAN
SDQKDSATLTGKVQTEHVPQPPAQDSQITERTVLSGAQPSCSQPLDRIDVTAKPGTVLQKSESESKQQPLGSSRKTKPRK
VPQGASSNKKLQPPGSSKNKQSNLQGVGRGPVTGRIQPLESAIAGASKKHGSTAAGNCRPKPGSLAGPATGSSSSQQ
>LOA-1_CQ_pol#LINE/LOA 2-3052 Fragment. [Culex quinquefasciatus]
SEVISEKILNWKVSDEESLSDHRQIEFEYNAGDIIKTNYRNPKKTNWILYKKCIDVYEFNSGGEIRTVDQLENASSHLIN
GILNSYAASCPFQHNSSNREVSWWNDNLAALRKRSRKLFNKAKASGLWDSYRKSLTEYNIEVRKSKRKDWNRSCEKIEST
PVVARLQKALSKDHTNGLGNLKKADGSFTQDSSETLEVMMKAHFPDSIVVSSESDQASEGEGPTKDWSENAHLKSCEIFT
QSKVEWAISTFKPFKSAGRDGIFPALLQHAKDKISIRLTELFRASISLGYIPKAWREVRVVFIPKAGKKDKTNAKSFRPI
SLSSLLLKTMEKILDDFIKGTYLKNYPLSKSQFAYQSGKSTITALHSLVTKIEKSLLNKELALCAFLDVEGAFDNASHCS
MRSAMESRSFDLCVINWIETMLRNREISADFGGERLVIRPQKGCPQGGVLSPLLWSLVVDKLLKKLAELGFEVVGFADDI
CIIVRGKLNNFITNRMQSALNFTSKWCRSEGLGINPAKTVIVPFTKRTNTSLQKLSLCGVTIEFQSEVKYLGVTLDKKLT
WNPHLENVINKGINAFWVCKNTFGKKWGLRPKMIHWIYTCIVRPRIIYAAVVWWQKTKQTAVQKKLSKLQRLACISITGA
MNSTPTEALNALLNLLPLNQFIELQAVKSALLMNRSVKIQEKDMTGHLELLKTFNLNPTLNSIVDWMPTRANYDVPFNVV
ATSRYIWEQGGPTLRSGSIVFYTDGSKMHNMTGAGVFGPGIKKFISMGLYPTVFQAEIFAIIECIHICLNRNYRYSNICI
FSDSLAALNALKGYTCQSKLVWEAIMLLKQLSLKNTVNLYWVPGHCGIDGNEAADCLAREGSGTNLIGPEPFFGIPDCSL
KMELKRWETSMVMSNWNAAIACRQSKRFIYPCEKSSRVLLKLDKRNLRIIIGLLTGHCPCRYHLVKMNKLQDSRCRFCNI
ENETSEHLLCECSALIQRRILFLGKGFLLPKDIWEASPSRVIDFIKRVDPNWDECSF
>LOA_Ele4_gag#LINE/LOA 1080-2624 [Aedes aegypti]
MEFTRENDLIEKESLEGVSSCSSSILNTPEREDMYVDDDDYDDGINVTLLSSSVIMESNKDSLQNTVEEKQMEASIATLN
STNNGDEKGCSKLPSTAVATSDKKQKRLNGAGKKRFKYLVAHGHSPNDARILAEXPFRVVQPDPSKRRRNADLSESTSSD
TNPPKKLARQVVRGQSSKAKSSVQQRLEQASKGGVSLDPKEAEGNNRLNKPLFSEVVNCTRIGILPEGFPNTEFTTQQLV
TIQNAILKKVAEQRKEPIKPKFGNCLFRPGHMIIICKNQDTVNWLKAKISNIKPWENASLIAVEEKDIPRPEILVGFFPR
SEQDSNEEILAFIESQNEDLIVDAWRILKRYTVKQHHVELIFTVDAVSMKSLENCKFIIDYKFGVAYIRKRNSKAEVIED
NEEKASKDETGKSRQHFEGARDVEMSEPGPIGVDNTLKSAENNAHCTLTTSTTIVNQCSPHSKEKKNDKSTVVHSISQPD
HTKKRNNNLEYRQIESHKQTLKKEADKLPANQNK
>Neptune1_Ap_pol#LINE/Penelope 100-2535 [Acropora palmata]
MRITIRAMCVKRDDLDKQILQCRSELSKICPVVLLNSIRAKIQELNAALFNHLHQIKTLKLKHFIGPKTSSHGTFDSQNT
VVTIPENLPLTDSEKSVLSRGLNFVPIAKSTDEFSVKQDVEKFPRRIQLKAFFREKEDNSYASDKDIFETLHVRKSKWTP
PEGQFASLDFFIKKCRHDVHKLKSNCNTKLSNLSKEEWTALINLKNRNDLVIKAADKGGATVVWRTDLYHQEAIRQLSDP
TFYTKVNKDLTPANQKIVKDTIQELITKQELPVTAQNLIITTPRTSCIYFKPKIHKTQQPRPSIVSACSCPTELISSYFR
QSHDTHSQITTFIYQRQQPRTRNIPGNFQFSQAENKIIFTMDITSLYTVIPNNEGLQALKYFFNQRPIKKPSSETLLRLA
ELVLTLNCFSFGDNYYKQINGVAMGTKMGPGYANLFVGLIENKFFSNYHGPKPDLYKRYIDDCVGATSSSKEELNLFINS
VNSFHPALKYTWEISENSLAFLDIKLSINDNGLSTSVHYKPTDSHNYLLHSSSHPQHVKNAIPFSQFLRLRRLCSDDTDF
NNKCEEMCQFFKKRGYPDSAVTTGKHRAQEIDRETALQTSQNEETDRIPFTLTYHPQNLAIKNVILKNFKILRNDPETKH
IFSLPPLISFKRDKNLGNFLVRSAFKFNNQPGTFTCKRTRCKTCPFISNTVKISGPNRSVKVTDHFTCISTNVIYCITCT
LCKKIYIGETGRRLADRFREHLRDVEQNNTDASKPVARHFNLPNHSHHNMTICGLSLHHGNTESRKNLEQKFIFQLGTLS
PH
>LOA_Ele6_pol#LINE/LOA 1477-5163 [Aedes aegypti]
MNTDIKFIQINLHHAKGATGILCRRFLKENFSVAFIQEPWVNKNRVLGIAGQIGKLVYDEGNSNPRTAILIKGGIKFVPI
TQFIAKDIVVIRMEIPTTRGKTEAYVVSAYFPGDVEAVPPPELTAFINYCKTNNKHFIIGCDANSHHTIWGSTNINKRGE
DLFEYISSNNIDLCNKGNQPTFITKAREEVLDITMCSPLFSTRIKNWHVSDEQSLSDHKHIVFQYNAGEIVKIAYKNPRN
TNWERYASTMQSECLLLNTTIQSTMQLDRVAKNITEQIIQAYNVNCPVKEEISNREVPWWNKTLNNLRKKSRKLFNKAKI
SGQWDQYKKALTMYNKEIRKSKRRTWRSYCENIEKTPDIAKLQKVLSKDHSNGLGNLKKTNGDFTVNSQETLEMLMETHF
PGSNLVVSDNEESINVNDNYGPTGTIRYNSLIPDTIFTKSKVEWAMNSFEPFKSPGMDGIFPALLQKGGEILLDSITNIF
KASLMLGHVPKIWTQVRVVFIPKVGKRDKTNPKSFRPISLTSTMLKIMEKIIDEYIKTEYLQKIPLNRYQYAYQTNKSTV
TALHNLVTKIESTLDRKEIALVAFLDVEGAFDNATFSSIKKSMENRHFDPGIIAWIMEMLKNREVSAELGVSSITIKTTK
GCPQGGVLSPLLWSLVVDDILNKLTEQGFEVIGFADDVAIIVRGKFEHTITDLMQSALNCISRWCQNEGLNINPSKTVLV
PFTRRRKVTFKNITIEGCIVQYASSVKYLGVILDDKLNWNLHLEQVISKATIALWVSKNTFGKKWGLKPKMIHWIYTVIV
RPRVVYAALVWWPKTKQSTAQKKLEKLQRLACMAMTGAMRSTPSKALEAVLYKLPLHQHVQMEAEKNALRLRRTNIFLEG
NLSGHLSILKDFQINPLVVMNEDWMERTLNLDIPYKVVETDRQMWESGGPSISPGSIMFYTDGSKMSDNTGAGITGPGVN
VSIPMGRWTTVFLAEIYAILECASICLRRKYRHARICVFSDSQAALNALKSYTCQSKLVWECIQVLKQLAMNNQVSLYWV
PGHCGIEKNEKADFLARRGSNTQFLGPEPFCGVSKCVIQMEIKKWERNMIQSNWIGTNTSRQSKLFITPNKQITEKLLNL
NKKSFCIVIGLFTGHCPARYHLKKMGRSPTDICRFCDCEIETSQHLLCECSALFAQRRQYFNKGILSPFEIWQGNPNKVV
EFILRIIPDWGTSHYQSTAVTLNSNLSS
>CiLOA_pol#LINE/LOA 1253-4778 via tfasty with Baggins1_Cis_pol, 6 frameshifts and 2 stopcodons. [Ciona intestinalis]
QINLHHCIAAATELMAKLNAEGHTFIALVQEPYCLHGKVRYSPTSTTIFSHVTSIHPKTCVIASINLVTWPLAQFTNRDM
CTLLLSATNNNKNKTILFSPQFACQVTTEMPPPSQLVQDLITHCELNNTNVIIGTDANSHHTFWGSTDCNNRGTALLEFL
MSTMLTVCNTGSTPTFVTKNRAEELDLTLCTNHXXXSHSVTNWKVHKDISLSDHRLITFQVDREYSTYPSHYRNVRNTTW
DKYVVHLDKSLSGIPHKLPTTVEELEKYSMVVERAISSAFECSCRLVKRSSTRRQSWWSAELTSLRKLAKRSHKKALRSK
SASDWSASKEATRAYKAKIRSSKRTSWRKFCSEANNLPAAMRLHRVLKGSKSHQIGSLRKPNGEFTSTPGEALNVLFDAH
FPDDVNISHRHQNTDPSLVLGDDDLETRIVTEDRVREAIKSFDPYKSAGLDKIYPVLLQRGIDILVPHLKNLYxSSLKMG
QVQSRWNEAKVVFPPKPGKGDYTSAKSYRPLSLTSFLLKGLERLYWCIYRQVPLGTFSPSQIYQYTYRPGVSIENSLHAV
TTKFEKAVFNGQFGLGIFLDIEDAFSNATFESMIEEPLRSRHVHGKVIRWISNMLRNRVATAEIHGHTEVKRVTKGCPQG
GILSPILWNLVVDTLLLQFTSxDAAKVQAYADDLCITITGLVASVVGDIAQSALQRLEKWAKTNYLTLTFAPAKTVVVMF
TKRRKWSIKPLTLNNELLKLSSEVKYLGITLDSALTWKPHCINRIKTATMSLAQCRCAVSTRWGLNPKSMMWLYCQVVRP
MLSYACMVWVRATFSTTLQEKLRKCQRLACLTITSCFRTTPTRALEALLNLPPLHLHLQGNAVYRSHRLKTLGQWEGGDY
YTSRNKRHTYICNRISKEIQTLSLPCDRCIPSLHFDHSLRLVIEDRSSFKPPDPPHQSDGIICYTDGSKTVDRTGSGYLI
TRCTETKQVSVSLGSYASVFQTEILAINMVAKELLYDGTDSKSVDIYSDSQARINSLLVRDTWYFPRCSFRETPEAAKSY
VKKRQKLRSILQVITGHGMFASHLQNLKKSESPICPVFDEEDETSFHYVGICPAYANARREHLNLTELSREDLPSITIKA
FVAYLRGSARLLKLGRSMQ
>Maui_pol#LINE/L2 1079-4186 [Takifugu]
QTRVQTRMQSCSLTHLSAASVEPSSTNNNIFNTIEVVSVPRLKVHQAQSRGAVNHHNLIKINTKAQVGETNSTIKCGLLN
IRSLLCKSLLVHDLIADHHIDLFCLTETWLQEEEYVSLNESTPPTHLNYHIPRVTGRGGGVAAIYHSKLLINPRPKHGSS
SFESLTLGITHLNWRTEKPLLFVVVYRPPAGPHSEFLSEFSDFLSDLVLRTDKVIIIGDFNIHVDVVNDSFRNGFISLLE
SVGFLQQINQPTHSFNHTLDLVLTYGVEVEHVSVFPQNPLLSDHSLITFTFMIKDSSMFRTQSYYSRCLSDNAVAKFKEV
IPVLIPGPPCVXXGXSHYNLSPAEVDSIAEGAAASLXITLDSVAPLKKKIVNQRRCAPWYNSHIRTLKQKARRLERKWYS
CKIXSYHLAWKDCLVAYKKALRKARTAYFSSLIEENQNNPRFLFSTVAKLTKSHSVLDPRIPSSLSGEDFMSFFTDKVIT
IREKANQAIPTAARPSPDVLTVGTYRVSNEPLNSFXPIYFSETSSLIQKSKSTTCLLDPIPTHLLKDVLPXIGSSILDQI
NCSLATGYVPRSYKVAVIKPLLKKPSLDPDVLANYRPISNLPFISKILEKVVVTQLLDHLQRNSLFEMFQSGFRAHHSTE
TALVKVTNDLLXASDHGLVSMLVLLDLSAAFDTVDHSILLQRLEHVIGIKGTALDWFRSYLSDRYQFAHVHGVPSSYSRV
SHGVPQGSVLGPILFTLYMLPLGNIIRQHGINFHCYADDTQLYLSMKPEETEQLVKLQACLKDIKSWMXSNFLLLNSDKT
EVMVFGPKXLRDRLDHXITLDGISLASSLSVRNLGVTFDQDLSFNSHIKTVSRSAFFHLRNIAKIRKLLTQHDAEKLVHA
FVTSRLDYCNSLLSGCPNNSLRSLQLIQNAAARVLTGIDKRDHXTPVLASLHWLPIKSRIIFKILLLTYKVLRGLAPSYL
EELVTPYXPNRPLRSQNAGLLVVPRVSKGRMGGRAFSYQAPLLWNQLPVQVREADSISTFKIRLKTFLFEKAYXQ
>LINE2_CH1_pol#LINE/L2 1-661 [Crotalus horridus]
DLSAAFDTIDHGILLRRLGGVGVGGTVLRWFSSYLSGRSQSVLVGGQRSTPRPLECGVPQGSVLSPLLFNIYMKPLGEII
RQHGVRFHQYADDTQLYISSPSSLSEAADVMGRCLEAVRVWMGVNRLRLNPDKTEWLWMLPPKDHVNCPVLTLAGENIPP
SERVRNLGVLLDPQLKLEHHLTAVAGRTFAQVRLLHQLRPYLDREALLTVTHALVTSRLD
>Sake_BM_pol#LINE/L2 1906-4878   [Bombyx mori]
DFGICFQFKLISKTKESHSCNYKSINTTTRLYPSKDVNVSIINIFNLVHQNLQGMMGKELEIEMFLNMHNINVFCVTEHW
FRNYELLFNFNDHQLSSSFCRENAIRGGSLILVSKCLKCKERKDVVALSVERIIEISCVELEHLIVVCVYRPPDALYDSF
ENILENVLLKLSVSNKQIFVCGDFNINLLENTNTTIRFRTLLKSYNLPNLFLEPTRTTTTSATCLDNIFTNVTPINKKII
NQLTSDHSGQFVSFESNMNSKDKNTLVIVPINKKRIEKFRNNIKQEHSEIIYNKNPNLSYQNMFERINLVFTDVFIPKTV
TLKNKTVFSEWATTGVYKSRKKLYDLYSEKAYNNDETFHQYVRNYSKLFRKVCLAAKSLHLSDLIKNAPDKIKMTWNIIG
RESGKVRNSHQEFSLKIDDKLVTSHEDVANAFEKFFSDIPVSTTTSLNSSPTAAEILLHNHVNKCNEIFKFKKINSSNII
KSFNSLNVKNTADLWGISVKVLKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLS
KIFEKIILTQLLEHFNSNNLLHNKQFGFTRGRSTTDAGAYLVKNIFKSWEESHDCLGIFCDLSKAFDCVEHETLVRKLHH
YGIRDGALELITSYLSGRIQTVDVKGNRSSGTLLKMGVPQGSILGPFLFLIYINDLPSFIESRHEVVLFADDTSLLFKIK
RQLQVYDEVNDAISCVVHWFRINNLLLNSKKTKCIKFTLKCIKPSLNVRQVDSNVIVSEESLELVESTVFLGITVDSKLQ
WGPHIHKLASKLSSAAYAVKKIRMLTNADTARLVYFSYFHSVMSYGILLWGNAADVEMIFILQKRAIRAIYNMHSRESLR
EKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLH
IHRFKKTIKEHLCNKAYYKVNDYLEDCTKWE
>Baggins-1_NVi_pol#LINE/LOA 1255-4944 (really starts somewhere around 1340) [Nasonia vitripennis]
MRVAVLSNKMADRGQRNSVNNMNGAGSVPDTTIEFTQINLHHCKSASAVLARRMAGVRTGICLIQEPWIHNGKIAGLNGI
GTLISGSPVSTRTCLIVKGLQVETVPKYCSRDLCTARVSYKGTEGERKVIMIAAAYFPYEEACPPEEMVALIRECEAEGT
KLIMGCDANAHHTCWGSTDCNSRGESLLEFLAATNMDFLNTGSRPTFRNAVREEVIDITLASRNVWSEVMDWRVSEEVSM
SDHQHIVFRLGGQSTLDQLIRNPRKTNWVGYREELKAKISCFPVTYGTAEDIDHCSRILRDIIISSYENNCELRLKRPSK
GAPWWNKSLEKRRKKVRRLYNRSKHTKSDKDKRAYRAEQKEYKKEIEKAGVEGWKRYCKSRSTLSDTARLCSVLQHPKKP
LTDSIRLVTGDWAKNGQEALXGLMETHFPDFREGARSEAVQLMARGEDWRLAKRVTDKARIRWAIGTFEPYKAAGPDGIF
PALLQQGMDVLVPALEKLYRACLALGYVPEEWGQARVAFLPKPGKTQHAVAKDFRPISMTSFLLKTLERLVDRYIEESSL
VEAPLHSKQHAYQTGKSVDTALVDAVSFIQKGMKNRGLVLVAFLDIEGAFNYTTGEAISAGMEEHAIPATVARWISVMLR
TRTIVAAWGAYSCKGVVRKGCPQGGVLSPTLWCLVVDSLLCILNEAGINAQAYADDIVILIRGDDEDVLAGLMQFALGLV
EKWCNKVKLGVNPNKVSVMLCTNRYKTKPMEGLQLHGVPLKLVKEVKYLGVTLDARLNWGKHIKDKCEKAIGTFWACRRA
FGNTWGLEPDKVRWLYDAIIKPRLTHGALVWGHKCELKTHTGALDRVQRLVMGGITGSMRTTPTVAMERLLELPPLGKVI
RANACRTFCRIAESTNCSDFKDAALLEQVMPLMEERGCDRMAERIYFSKPFSIIIPEREEWKTGSHELLENSVVWFTDGS
KNENGVGAGAWEKGDTQEIVCSLDHYATVFQAEIRAITEAAKWLLERGTGQRTVSFCSDSRAALMALDSISISSKEVLRC
RQALESLAEHNAVRLVWVPGHSGVVGNEKADRLAGRGADGIRARRCAVAVPTCEVNRAIKDWLNSQLSDKWTNANGLRQA
RALMGSSPPEEWLRTIRGLSRNRLRLAVGWLTGHWRVGYHLWNLRLRDSGSCRWCEYETETTSHLLCECPAFAGTRQRVW
GVPMLGLEELRLKSLASICRVAEAINKGL
>Baggins1_Cis_pol#LINE/LOA 1809-5513 [Ciona savignyi]
CVMEALKKTSKDLVLCQINLHHCIAAAQQLMGRFQTMGQTPLALIQEPYCKRGKVAFVPQNACCFSDPNSSKPRACILSA
KNLVAWPLLQFMDRDTCTIAIADNTNSKNPVVFCSVYMAGDDPTEPPPHKMRELVTHCEQSNLRLLIGTDANAHHYYWGS
TDCNSRGHALMEYLMSTRLSVCNTGNSPTFVTRNRAEVLDLTLCSANLLSKVSDWKVSKEASLSDHQLITFRVNNLCKTT
PSHHRNVRKTDWMLYLQELTLLCEAIPAAPPKTAKEVDMLAKAVETAITLSYEKSCRLIKRTSNDTPSWWCAELTLLRRC
ARRSHRKALKLKTPAAWDESKASTRAYKNAIRSRKRASWRKLCEEVNTLPAMARLHRILKKHRSLQIGSLRKSNGDFTST
PSETLHVLLDAHFPENVNNQGSSTNHVKQWSSIQASDEVLVNNIITAERIKAAYTSFKPFKSPGPDGIYPILIQKGLEIL
CPLLIQIFKASLLLGFIPQRWLVARVVFPPKPGKEDYSTAKAYRPLSLMSFVMKGFERLILWYLQEGPIGQSPLHPNQYA
YRAGFSTEDALHNMIIKLEKAVFHNQYALGVFLDIEGAFSNATFDSMIVPLRKYHVNETVIRWISYMLKHRTATAELHGC
TEKKQVKKGCPQGGILSPLLWNLLVDTLLRQFTSQEAALVQAYADDLSVIISGPDPSTIGTIAQSTLNRLEKWAINNHLR
FAPAKTVVVMFTRRRKWSLRPIFLHNIQLSLSKEAKYLGVILDNKLSWKNHHSSRIKKATAALAQCRRAVGPTWGLQPKI
MMWLYCQIIRPILTYASLVSVSATYQRNIQDNLRKVQRLACLCITGAFKGTPTRAMEMLLNLPPLHLYLQGTAIKTAHRL
RFLGHWKGTGYSVWHKKSHIDICNQAMEDIHLLSLPVDCSSCTLHLERHFAIQISDRDNITPPVRPSDPSQLVCYTDGSR
LDGSTGAGVLIQSTKFDYKFSFPLGSFPSVFQTEILAINHAARILQSWNTAKMSITIHSDSQAALKALMSLKIHSPLLRE
TWYLLHNLGGLNLVELCWIPGHSNFDGNDQADELARDASSTAFIGPEPSLCIPVCSVRTELEAWMSRKHAEEWRQHCGCR
QTKEYLGQGLSLSRELLRLRRRQLRSVLQIITGHANLAKHQSILMRTACATCPFCQEEDETPLHYVGHCPAFAVTRWRNF
GVFKSDDLASIPVKHLVSFLQDTGRLDRYIPDPC
>CR1-70_HM_pol#LINE/L2 782-3944 via tfasty with CR1-61_HM_pol, 1 frameshift.  [Hydra magnipapillata]
EILLNLIQHTKNDNNKKYKMDDYESLIFNFRNKYIGSDENTDPDINYFNDLKVDCFYHYASELKEFLSKNGDENKKIRIV
HINIRSMNKNFENLRHFIEETKNYFDIICLTETWCSQNELNNNSNFHLPNFETILLERQLNKRGGGILIYVKQNIAHNVR
NDLCVSDGDKEIVTIEILNNKSEKLKSKSILLSCCYRPPGGASENLSLYLKHNVFHKGNKEKKKNFVIGDLNMDCLRYSE
NKKIKKFYDEIFVSGAIPLINRPTRITENSTTLIDNILTTNIYNNDIQIGIIKSDISDHFPIFLTINTISTPNINKSQTI
RKRIFNKKNLEAFKYQLSLLNWKHINFNEDINAIYNKFFNTFFSVYDANFPVSEITLKPKTLSSPWITKGLKKSSKIKQK
LYIKYLKTKSHANLRIYKNYKTLFEKIRKNLKKNYYSNLITKYKNDSKQIWKILKEITGKQKTCSNFLPKMIKINNVCVY
EPNEIAKEFNKYFTDIGSRLADRIPSTNISFNDFLTTSNNLLSSHDLFLDLSIEEFERAFKSLKKNKATGADGINGNIII
DCYESLKNILFKVFQTSIQQGVFPDLLKIAKVIPIYKEGEKSNVNNYRPISILPTFSKILEKIIFEKTYNYLVSNNLLYK
NQFGFKKNSSTEQAIIQFTREVSNSFAKSQYTLGVFVDLSKAFDTVNHDILLKKLEFYGITGKMIKWYKSYLSNRKQFVY
HGEELLPINLQNKTLIEIKCGVPQGSILGPLLFLVYVNDLNKASNLISIMFADDTNLFLSNKDINKLFLDMNKELNQVSN
WFKCNKLTLNIEKTKWILFHSSTKKRFLPYDLPKLYIDKVEIKKDSVLKFLGIYLDENMTWKAHIDYISTKVAKSIGILY
KARNYLNKNNLKQLYYSFIHSYINYANIAWGSTGKSKLQRLYRHQKHAMRIIYFLNRFSNTKPLFKDMNVLNVYELNLYN
ILCFTFCCMNNPLFHVFKDLFTFKVKNKYSLRNNNYLKEPFCQTKFNQFCIDYRAPYIWNKIVQPNLDSSISFSVFKNKL
KNIIFSTDNILKYF
>CR1-65_HM_gag#LINE/L2 168-932   [Hydra magnipapillata]
MATLSEIKKMLKEMFMDFKKEMQNQTEALLKQQEKNVLDIISGNTKIINKRLDKIENILNENISKIKILEKDVADVKLSL
NFQENLIDQKVAACHNSFEKELTCLQLLKNQQRNVEDRTRRDNLRIDGLPENDKETWSQTEEKVKIFLEKNLGLLGIDIE
RAHRTGIKKDNRTRSIVMKLKSYKDKMKILKETNRLKGSNIYVNEDFSKMTVDIRKKLFAEVKERRLKGENLAVRYDKII
HLKNAVKYSINVPK
>Crack-1_CS1_gag#LINE/L2 378-1028  [Capitella sp. 1]
MTTRKFSVDMKAFLTDPDGATLLRDTICGHLCSMIESLKTDLKRRDDRIDHLETRLEELEERNDTLEQYTRRNSVRINGI
SESAAEDCENKVLSTINEKMSLSPPMTMDSIDRMHRIGKPVPGKHRSIIVKFATYHQRKRVMSKRSSLRGSDIFINEDLT
KHRNNLLYIARQFKKKGGITDCWSYDGRILIKDNKNLIREIKKHTDLSSLQTESQPN
>Crack-4_CP_gag#LINE/L2 223-975 [Culex pipiens]
MSNRRSNTAKAGKESKSNGDVAQQLEEISAKLSKLDELEKLNRDLLGQLLKLSHRVTEVTVENRLLRQEIEDLKQERLQE
EVLIKGFKLQGPEHHQEVFHKVCEVIGADVAENVKEVRPLIFKQNRKTDAVLVKFWRVGDKHQFIQRVRALKRPITPGDL
NIKSINKFVLIQDHLTPEKQRVHRLTWELCKLGLQKPWFYKGSTWVTHPETQKRLRVADSKDVDELQFLLVTQGKVNTNS
NLDNQVTVSDD
>Crack-1_SP_pol#LINE/L2 1096-4005  [Strongylocentrotus purpuratus]
MSNVNLKDQIISIQSLKGLKIAHLNCTSLTKHLDEIKCMLKECNFAILTLSETHLSEYISNGEIQITGYDIIRRDRNRSG
GGVAAYIKHGITYTQIDDIVPDNYLEIITLEVKFGRYKSFYVIDWYRPPNAKAECFDMFANILQAIDDLNKECIIMGDLN
CDVLPLPKSWQTNRLTDISELYNYSQLIAAPTRVTQTTSTAVDLILTNTPLKIRHSGVLEITISDHYLIFCEFGNDRPHN
AYHKYHVGRNFKRFDETHFKEDVQDINWDAVHSELNPDQACDILITKLVNVINKHAPLREKRVKNKDSPWMTQNILQKIK
ERNNQKIKARNTRNGDEWGKYKRLRNNVTYMIRKAKHDFISQKIESSNKNTKEIWKSLRYLAPSKSRDGHVPKLVIDGKE
YDKNDDIANHFNDYFVNIGKDLHDSINNESESDDVPRIVYSAGCTFSLKAIEESHVLKVLQSLSPNKATGPDQIPAKLLK
SIATSIVKPLTHIINRSIIEGIVPSKWKIARVTPVFKQGDKMSTNNYRPISIISVLAKVMEKIIYDQLYYYLDTNDLLCQ
TQSGFRAKHSTQTALLNVSEEWMNAIDNGAIVGAVMIDLRKAFDTIHHKTLIDKLSAHGLDEQTVCWFESYLSERKQSTN
INGAHSNYKYITTGVPQGSLLGPVLFSLYINDLSLVINKCKISLYADDTCIYYSSKKPGEIQQSLNEDLGQLYRWLQSNK
LILNLEKCELLLMGTSRKLKVLNDNIPFRVMIGGSQIKRVQTCKYLGVILDEHLNWNAHIGYVKKKTLNNLYLLKRIRPF
ISKDVALLFYRSNIQSYFDYCSLVWCNTGKTNMQTLQLLQNRSLRVVLRVGYMYSSQLIYDSLNFDKLDVRFCKHLAHLM
FKVVKKELPSYIYMQFITQTFNYSLRVGDVHFSIPRIKTNYGKRCLRYRGSKLWNVIGKSSSVYTLTAQQFKKYIISLDW
KHIFTQMYPY
>CR1-63_HM_pol#LINE/L2 1056-4135 via tfasty with CR1-29_HM_pol, 2 frameshifts.  [Hydra magnipapillata]
MNSKLLNNFELNSFNFFQTNKFVINKDTDPGSIYFSEAGALLNNCSYFYNNELKEFLERDHLNVIHFNIRSLKKNFESFR
NNIEEALNIFNIICVTETWCSSDEAKSNSNLHLPGFYLVPLARKTKKRGGGVLFYVSEEMRFINRPDMSISDADKEVLTI
EILAKKNKNIIISCCYRPPSGEINSFKSFLITDIIKKNYNEKKLNYIIGDINLNAFNYHVNYKINGFYNDLFENGAIPLI
NKPTRVTSNSASLIDNIMTTDTFNESIKKGLIKSDVSDHFPIFFSINIDIELVPITNQVFFKRCFSEANLMSFNEQLSLL
HWKHINFSSEANLVYNSFFKTFFEVYDANFPQYEVSLTKKSIKSPWITKELRKSSKVKQKLYIKYLKSKTDKNKEIYKTY
VKHFECQRKNLKKKYYSNLLEKFKNNSKRTWQILNEITGNYKSKTSNLPKVIKNNDVFLNNPKDIANQINNYFITVGPNL
AKNIPIITNSTNYFTLPIISVLNNFEISMKEFECAYKMLKTNKAKGPDGINSNILIASYENIKTILFQVFSCLIKQGIFP
DQLKIAKVSPIFKGGELSNITNYRPISVLSGFSKVFERILYNKIYDHLSKNKILNTSQYGFKNNNSTEHAILHLTRNIAD
SFEKSQFTLGVFIDLSKAFDTIDHEILIQKLKNYGISGNFLNLLKSYLSNRKQFVQIDVSSSTNLLDITCGVPQGSILGP
LLFLVYVNDLHNASNLTTVMFADDTNLFLSSSDIVTLFNDINIELVKISNWFKTNKLSINLEKTQWTLFHPKSKKKLLPN
DMPQIYIDNVQIKQSKVIHFLGVFIDENLTWKNHIETLCNKVSKNIGVLYKARNFVNRHALIQLYYSLIQCHVNYANIAW
GSANNSQLEPLYRQQKHLARLINFKDRYTHAKPLLIDMNILNIYQLNVFNVLCFMYKCKINLTPIFFQNLYAIKPRNKYE
LRNNNLIHQHYSHTNFGRSLISYRGAFLWNQIVLKNFDFSKNCSFLTFKNKLKKVILTIDNIFEFF
>CR1-34_HM_pol#LINE/L2 1612-4573 via tfasty with CR1-11_SP_pol, 1 frameshift.  [Hydra magnipapillata]
SLFDRHSPIDSYHQSTLPSTIEEISLNSDLDNLRAKYPKNISLAFLNINSIRNKFSDIITYINKTVDILILGETKLDDSF
PINQFLYPGYKTPYRLDISQHSGGLLVYINENIISKRLAKKDFPRDIQIITFEIKLRMRKWLIIATYKPPNQNCDYFFNH
LKGVLDFYLQSYLDFILIGDFNIQPSEKKNEGIPSTLSCINLIKQPTCFKSVNNPSCIDLILTNRKLSFQHSNTFGTGVS
DHHHLIYTMLRSTFCKLPPKKLIYRSFKNFSSEIFAKILRFNLKSCYDISTFNEIFSNLLNIHAPLKSKILRGNNKPFIT
KDLRKAIMLRSSLYKKFLVDKSDFSALMYKKQRNLVVKLNRKNKKKYFEQINTLSNSNTSLWKLTKPFFSDKSTNSNERI
TLTENGNIISDSSLLTNIFNKYFINVALPSSMADHIKWSFSPCTSDPVESAIKKYVDHPSIRNIKNKFKMNAHNFKFHCI
TPDDITKIIGSMNEKKKTSGEIPTFMLKSYLIYFRDSLTDCINNSILDGTFPSFLKMADVLPCFKKNDPTDKANYRPISI
LPALSKVFEMIVYEQILLFMEPKFDKLLCGFRRGYSTQHTLIFLLNKWHECINNGGIVGTLLMDLSKAYDFIPHDLLIAK
LEAYGFSKESLKFLISYISGRKQRVRIGPSVSNWVDILSGVPQGSILGPILFNIFINDIFFFIKDTELCNFADDNTLYAC
DYSLEKVIFRLQKEATNTIAWFKFNSMVANPDKFQLLLVGLKNTKNQYLKIGNITVFASDRVKLLGVTIDKNLNFGEHIK
YLCSKANGKCFALSRIRSFLSRNKATLLFNAFIMSNFSYCPLIWMFCSKYYDNLINKIHKKALCIVHKRFDLCLDELLSF
DNSPRIHLRNLRFLMIEVFKSINCLNPQFMKDLFNTKNLPFKLRCSKKMILPSNGSKYKDQCCTIFRAISLWNTLDNKTM
SSKSSEVFKKHIKNWYAKNCYCKICRF
>CR1-27_HM_pol#LINE/L2 936-4023 via tfasty with CR1-16_HM_pol, 1 frameshift.  [Hydra magnipapillata]
MATNENFESRVFKIQKTNYSTLNENLDSDYNIYHNKFSDCSYYFPSQLEGFLFKNENERNNNQMLILHLNIRSLNSNFEK
LLDLLEETKHVFNIICLTETWISLEDLNNFHLPHFNTFLMERKTNKRGGGVLIYVHENFEHCFRHDLSVSDCDKEIATIE
ITNCNKKKILLSCCYRPPDGVSENFSMFLQQIIKKGTVEKKQNFIIGDLNMNCFLYNDNLKVKNFYDEIFETGSVSLINK
PTRVTTNSATLIDNIITSDIFNNDLKVGILRTDISDHFPIFLKLDNTNSEKTLTAQRVIRKRIYNEANLNLFKNQLSLLH
WNNINFNDNANNIYESFFKTFFSVYDANFPIIENKITTKSLNTPWITKGFKKSSKIKQKLYINFLKTKTPKNEKIYKDYK
NLFEKIRKNLKKNYYSQLLNTFKNDTKRTWQIMNEIIGKQKSCSGFLPQMVRVDNKSLYEPRTIAQEFNKFFIDIGPTLS
KKIPKTKSLFTDFLVPIDNCIGSVELSSELLFEEFERAFKSLKKNKAIGADQINGNVIIDCFEQLKVVLFKVFKASIHQG
VFPELLKIAKIIPIFKEGDKSIISNYRPISVLSTFSKILERIIYNRVYKYFHVNKLLNINQFGFKKDSSTEHAIIQFVRE
ISKSFEKSQYTLGLFIDLSKAFDTVDHQILIHKLKHYGIKNKVLKWFESYLSNRKQFVPSNDGYHTNCLSITCGVPQGSI
LGPLLFLIYINDLNKASKLTSIMFADDTNLFLSNSDIFELFKTMNKELIHVSSWFKCNKLTLNSNKTKWTLFHSLSKKRY
LPLNLPKIFIDQNEIKRDSVTKFLGVYLDENITWNHHIDYISTKISKNIGVLYKARIYLNKKILIKLYYSFIHSYLNYAN
IAWGSTEKSKLQRLYRRQKHAIRLICFANRFSHAKHYFIEMRILNIYELNIYNVLCFVYMWKNDLSQSVFKDIFTPKPIN
KYNLRNTDFLNEPFCQTNFNQFCIVYRAPHLWNKIVLPNFDFELPITFRFFKSKLKTLIFSLEDVLCYY
>CR1-38_HM_gag#LINE/L2 3-623 Fragment.   [Hydra magnipapillata]
KVEKSILENAKKISTLATEVEEIKVSLNFHEELIENKIKTALDIFMKSKCTPNEIQNNNTELKKINSKLREIEDRSRRNN
LRVDGVKEDDNESWLESELKVKTIFDEYLGIKNVKIERAHRAGKVGIKEHRTIVLKLLDFKDKEAILKNSSKLKGKNIFI
NEDFCTETNRIRKDLREKMKIERQSGKFAYISYDKLIVREWNAKKK
>CR1-63_HM_gag#LINE/L2 72-905   [Hydra magnipapillata]
MDFTMASIELMVNVLLDKQKNTIIEETQKLLKEQEKSFTAITTANIKIITGRFDKLESDILNNSAKIATITNALETSNQK
ILLLETELNEIKKFIHVNDEIVASKFEIVKEKTKKVSSQVKDKSTVNKINNKLREIEDRSRRNNLRINGIKESEHETWEE
SELKVLKLFEETLEIKDVKIERAHRTGPRGENKNRTIILKLLNYKDKTDIMKRSVKLKGMNIYINEDFCFETVQIRKDLK
NEMFKQRELGKYAFISYDKLIVREWSEKKIDAKDCQV
>CR1-41_HM_gag#LINE/L2 64-804   [Hydra magnipapillata]
MEITIKNIEKIITNKFEEQKRSLLKETERLLKDQEKNFTQIVSGNIKIITDRLDKIENELNINKVNMRNFEKDVNDVKES
LNFQEEKIKEELTQIRKRYDLEIKNLNKKNTDLENRSRRNNIRIDGLKDMPGESWSDCEKSVKNIFTNNLKISSEVIVER
AHRIGSYKEDKTPRTIVVKLLNYQDKNKILSSLKNLKGSGIYINEDFAKETMEERKRLWEEVKNLRNQGKYATIKFNKIY
CREFRK
>Crack-4_CQ_pol#LINE/L2 3-2858 Fragment [Culex quinquefasciatus]
NFEECIMNKSVLNHKSAVKIFQWNIRGMNSLEKFDGVRELIDRYGDPIDVLVLGETWVKEGNQEMYNLAGYKSIFSCRAR
SNGGLVVYVRSNINAKIVDIQSHNGFHLIHLLLSLGKMKLNLIAVYRPPGFPSGDFLDKLEAKLGVLQSDQEVILLGDTN
VPCNVEANSTVQEYVRLLSSFNLQVTNNITTRPASQNLLDHVVCSTGIPGRITNETVETELSDHSMILTSLEMKVEKVAK
TLTTDIVNHELLDELFARSITQFPGEVSAAERLLFAINQYKEALESATRTVTVKAKVKGNCPWMTLELWQMIKIKEQVLK
SSKQHPSNAHLRELVKHTSQLLSKRKAQSKRNYYYNLITTSTPTNSWKLINEVLGRSKKKDSEILVRDQSGVLKDNIQAA
NXLNKHFCEVGENLASSIPSDRNVNHFRTLTRHDLTIYMRPATSQEVIVLIGQLNPKKSPGPDRIPASFIKKHHLLFAEL
LKDAFNEMIETGVYPDFLKEARVVPIFKSGDPTDVNNYRPISTLSMLNKLLEQMVAARLSSFLDTHKHLYNQQYGFRKGS
STLTATCELLKDIYDSLDERKFCGALFLDLQKAFDTINHELLLQKLEFYGIRGKANSLLRSYLTNRMQHVSVNGTRSESR
RISTGVPQGSNLGPLLFLVFINDLSRLQLTGKIRLFADDTLLLYSSRDCRTIRNNMLEDLTILNQYFASNLLSLNVSKTK
FVMFHTCQRRVPELSPIRFGNQVVERVSHFKYLGLVLDETLSWEAHIQHLKRCIAPICGVIRKLASFIPSVWLLKLYFAL
VQSRLQYLALNWGTAAAFRLRELQTLQNRCLKSILAKPYLYPTRQLYIDAPETVLPVRGLHMQQTLVHMWNMLKDDATHH
NLEFEIINSMTRQNGDIRIPRSNTELCKNRVTYVGSKLFNELPNDLKELNSKVVFKKNLRRHIKNNLLNALS
>Kiri-6_DK_gag#LINE/L2 329-1273  [Drosophila kikkawai]
MSTSTASKRLRSNAGTANDRLSDAPSSQILDLLKVRFQEQTDEITAFVRETEKRILSILSDRLDSIAGEVKQTGERVSRL
EREVVDLRSQREQLSVLVDRLSQEVADMRVVKERVGGVEAKLAAHHAANNALDLRIHGIPYVEGENLKTLFHTLCFSLHI
TPPPRVRDIFRARKTQRTNVDPVIIVKLDNLREKIGLLKIIAAYRRENKMQLSLKHVGIDSDAPIYVNEQLLRENYIIFK
EAMRLKKHKFLTAVFTRRGLVHVRCNGSENVRCIERIEELNVMCDNEPPLSSSRSSQLPTLALEDGPAQSESFRS
>Kiri-4_AAe_pol#LINE/L2 1443-4274 [Aedes aegypti]
MANVRREYTSTDWSVQGIVMKSAFISNKLSICCMNAQSICARRMSKVVELRQIAKVSNVDVICITESWLNINVSSDVLDI
EGYTIVRNDRVGRLGGGILVYLKKNINFKIIEASSNDIGTPETEFIFVEISIDHRKVLMGFFYNPPELDCSQVIHDKLTC
LKYQYDHIYLMGDFNTNIINTLSEKVKRFCATLQCLSLSSLGRIPTHFHRTGASLIDMIITNDTGSVLRFNQIEVPFLSN
HDLLFASLDFDLLPNNNTRTFRDYSRINSSKVIELYNRIEWNEFYSIDNPDYLVPFFNNHIENIFDSCVPLKTVHNHPRS
NPWFNQDISKAMIDRDLAYRVWKVSKCDTDYSLYKSLRNKVTALINTAKKEYWNTKVSNASTSKELWKYFGQMNVNSKKT
NGDTRFSPDEINVHFSNCYSTSNDVVANNPSLVDSFFSFSAIELNQIINATYEIKSNAVGLDGIPIKFVKSILPLLLKPM
HHIFNSIIKLGVYPNAWKISKIVPINKKSNSNSLDNLRPISILSAISKIFEKLVKNQIVTYISNSNLLSSSQSGYRKGHS
PKTAMIKVCDDMGFVLDSGGSVVLLLLDFSKAFDSICHETLCHKLESQFGFDFDAVSLVRSYLTNRSQTVFVNNQFSEYL
PITSGVPQGSVLGPILFTLYINDLPIRLAGCNVHLFADDVQVYFNCSGLTTDAAAELINNNLQRILDWAVENHLILNARK
TQACYISRFKRMVEKPEIVLNGNRILYSDVVTSLGIIVQQNFEWDSFILHQCGKVYAALRTLRSNAYFLSSATKLRLFKS
LILPHFITCDFIMTQASRTTMDRLKVALNCCIRFVYNLNRYSHVTPLQNALIGCPFNKFPSVRSVLLLHNIIRTQSPSYL
FSKLIPLRSVRGKKFVIKRVRTSHYASSLLVRGISLWNNLPSHIQNTNSSLGFKKTCLQFFNHE
>Kiri-7_CQ_pol#LINE/L2 1-1668 [Culex quinquefasciatus]
KNDPAGDVDADELNAFFSSGHRQLQAVDRSDNSSEPCHRTTADHGDNGFAFRHTDVNEISRKILEVQTNATGTDDIPISF
VKLLCPFVLPMLAHLFNHIIDTSSFPAAWKKAIVTPIPKSSSPIQPKDFRPISVLPAVSKVLEKVLLGQISEHLNAAEPP
LLAQNQSGYRKGYSTTTALTKVVHDVYSNLDENRCTVMVLVDFSLAFNCVNHQILRKKLNTEFKFTRSACDLITSFLSGR
SQIVRFGNSMSAALDVPDGTPQGSCLSALLFSLYINSLPRNLKCEWQLYADDLQVYLSGPIAEVDRIVRDVNEDLAAIAD
WARVNQLFPNPKKTQAIVFNKTGTVTPQENIVFCDSIIPLSSQVINLGLHMDCNLTWKAQVNDVVRKVYHTLRTFRRFGS
VLSLQTRRKLVQXVIVPFFTYCDTVYFPGLSAALREQLHRGFKSALRFVHNLRRRDTTVALRNSIMGHDLPDNYQLRVCC
FMKKAFEGTLPDYIMQHLQRGRQERTAGFIIPRHTTSSGKSVLVHGASCWNSLPMAIKREARFNPFKRAVITHMQN
>L2-1_Croc#LINE/L2 201-3200 [Crocodylidae]
MAQSTXSPITVQIGRNCPRKQKSRHKKPDSGHLTPIHCTGPLPXARAGSRQHKATRTKVDADQRKICRQQTTHNLISDEA
PDIACITETWLDDTASPVLAHLVPPGYSAHRRPGQDEKAGGTAFIFSANIKSKRGASGKTTSFEFIHLTTETRAKANTDF
MLIYRPPQTKGFIKELTDTLSATVVKYPRLVVLGDFSTHIDKAADAKAXKLISSLASLGLSQVISGPTHAAGHTLDLIFG
LDVKIEDITTQSLSWTDHHLIKAVVRDLPAPRQQERPMILIRPRRLMDSNKFQSLLKDSSTLPPTGRGVEDLVNHHHHCT
LASTIDTLAPKRPLPPHRPHRSPWFSDTLRRMKREGRKLERRWRKTKADTDRMKXNEFLQAYAEAVLQAKRTFLSASTEA
AKSRPKELSRVVNCFINPECLQPASEPSTKRCEELSSYFAEKITHIREAFSNSMDPLRLYPPTNSPPAFPEFSTFTHQEV
LDTLKESRPKTCESDPCPSWLVKESHEQLVPLLTEIANASFREGIFPSSFKHAIVRPTLKKPALDTSVLANYRPVSNLPF
LSKLIEKLAKGQLQAHLTEANILDPAQSGFRPGHGTETALVALMDDLLLSMDRGQTSILILLDLSAAFDAVDHEILLSRL
REVAGVQGNALKWFESFLEGRTQRVVMGNCTSTTRPLTCGVPQGSILSPVLFNIYMQPLGELVRRHGLKCQQYADDTQLY
LSFTTYDHTTTTKMAQCLDEISSWMKNSWLKLNPSKTEVMLVGRGKHFEEFAATVQSPLVEGTHPQLVNSVRSLGVLLDS
SLTLSSHIAASASNAFYHLRLARRLRPILADDDLASVIHAFVTSRLDYSNAIYLGMKPSALRKLQLVQNAAARLLSNTGY
REHIKPVLRSLHWLPIEYRIKFKVSVLIFKALXGLGPGYLKDRLKLRDEDRGRQLRSSGTMELSTTRVKLVCAGDRTFSG
AGPRLWNELPQELRTITNLTTFRSKCKAHFFDLAFSNINT
>Kiri-8_CQ_pol#LINE/L2 1552-4058 [Culex quinquefasciatus]
MLDNSSATPSQLNCFIPRVVMNCALDSSKLNICHLNAQSICARQLSKFNEFKICFSNSKVSIICVTESWLTDNIPDELIS
LEGYNLIRNDRKCARGGGILVYYKSNLTCKILTXSKNDTLNTTEXLLIEIHCNREKFLLGVFYNPPRVNCSEIVSSLFSE
FSTSYENVVIVGDFNKSGTLSDNFLNAIDHLGICCVNSFPTHFHSGGCSLLDLFXTNNTNFVHNFNQVSAGGFSKHDMIF
ASLNLSSFEDEIYYFRDYNNVNLPALIEAVNSINWSQLFSMXDPDIALDXFNQHIRNLFNRFIHLRKYVPRKNSWFNNNI
MKAMIERDLAYNIWKTDKNFTNYSQFKRLRNKVTHLINEAKSNYVTSRVDSSVSSKDLWNKLKQLNISNKSKPDVKFPNS
NAEINNYFTSNFTQDLSHPPILPRNNEGFRFSEVNVNDIINAINSVKSNAVGMDDIPIRFIKLILPEIIHKITFIFNMII
LSSKFPRAWKMTKVIPIRKKSRSLDLNNLRPISILSALSKVFEKVLKIQIQTYLDNFNILNSNQSGFRKNHNTTSATVKV
LDDILSVIDKKGKAFSVFIDFAKAFDRVSHVKLIQKLSLQFGFSSGATELLQNYLCNRKQVVFANGLFSDSASIISGVPQ
GSILGPLLFSLFINDLCSVLNHCRIHMFADDVQIYIASNRLSIPQMAQLLNEDLANIYDWSCSNLLPINSSKTKVMLFSR
NSSEHQQPLIMLGQNVLEYVLKYPSLGFILKNDLEWDGHVNAQCRKIYIGLRTLKLSASMLPVNVKLKLFKSLLLPHFMY
GDVLLLNASSASLNRLRVALNACVRFVYNLNRYSRV
>Kiri-1_CQ_pol#LINE/L2 1299-4148 [Culex quinquefasciatus]
MPPLTNHTSANIPGVVMNCALHSGKLNICHGNTQSLCARKFAKLDEVKDLLHNSKVTVACFTESWLTGQISDRSIAIPGF
AVCRNDRMYQRGGGIVIYYRSHLSCRKVFCTQLSAESGNKTESLVVELRFGGETVLLVAVYNPPGNNCSDFLEEKLVEYA
STYNNVLLIGDFNTDMSKPSNLQSQFQSVLDTFALVSVGEEPTFFHNRGSSQLDLFITSCSDRVLRFNQVGCPALSQHDL
IFASLDFDANPVPRVNTYRDYVNFDSTSLVDAVSSVPWHNFYEVNDPNELADFFNSRMKQIHDVCIPLRVIRCRNESNPW
FSYEIRKSMLERDLAYSDWRRAPAESKLVARQRYNSLRNRTNTMIANAKVQYFNRFLDSRVPSNVLWKRLKSVGVGKEKS
SSVCEFDPDEVNRAFLSSFIQNEQGSGLRSSAADSPYSLTFQPVEGWQIVNAVCDVKTNATGLDGLPIKFIKIVLPLVLQ
QITHLFNSIIATSIFPTCWKHAKIIPLRKKPHLSALTNLRPISILCALSKVFEKLLEQQMSSFITENNLLTEHQAGFRKG
QSIQTATSRVFDDLARTTDRRGSAVLLLLDFSKAFDTIPHNKLCTKLETQFNFGPSAVNLIRSYLENRRQTVFCGDLQSV
SSIVDSGVPQGSIVGPLLFCCHVNDLPPVLRYCSIQLYADDVQLYIGRLGPCSRELIRMVNEDLDRIAVWSQRNQLFVNQ
AKSKALFVQGRRRNKAQLDLLPRITMSGQAIEWVDSAKNLGFIFQADLQWDGLIQQQCGKIYGSLRTLRSCTSAAPVSTR
LKLFKSLILPHFLFGELLHVNPSAGALDRLRVALNCCVRYVYGLTRYDHVSHLQRNLVGCPLDNLYAHRSCLFLRKLLTT
RSPPELYQKLQQFRGRRLLNLIIPANRTLTYSSSLFVRGVVNWNMVPTELKHGVSQATFKRNCLEFWNRE
>Crack-13_BF_pol#LINE/L2 2-2143  [Branchiostoma floridae]
MILNEASLYIANLPWDLVELFEDVDDALDVSMLLFNTVADFHAPVRRFTVRANSAPWLDAELREAMAMRDEAKTAADLYG
LPSDREIYKKLRNYVVKLNRKKKEHYFKSKMSENSNDPKYVWKLTNSLLGRSKCQYPTCVEVNGQNIVKPRQIANYFNDY
FMTKTETHRKNLESQNAPVTVPIDQQIMSDKSCCFQFHPVSDDEILRLLLDIPMSSTCGIDQLENKLVRLSAVYIASPVR
HICNQSLMSSCFPSQWKRAKVCPLRKNTRKPLTGNNSRPISLLPTLSKVLEKVVHNQIWQYAALNDIVTPFQHAYRPNHS
TTTALLRMTDDWLSAMDKGEMVGVVYIDFSAAFDLVDHELLLAKLQSYGFSSGPLAWMRSYLHARTQVVYINGHFSEPSV
LECGVPQGSCLGPLIFTLFTNDLPLSVSNSTTEMYADDTSMYKAAKSIAEIAAVLQPDLNKIVEWVKNNKLVMNVLKTKC
MLFGSPRKLALLPSTSLNLVIGTRSIEQVKETVLLGLHMDQSLTWDLHINHVVAKQSRNIALVRRHAWAMSYEVCKVVLC
ALVLSVAQYCLPVLANMSESNARKLQVVQNRACRLVLKCPLETHVKQMHSDLGWPMVRERFAISTLTMFFRILVSKEPHN
IYSSIVPVHSTHTYSTRLSNSFSFKLPKPKTNSKKRTFLYRAISLWNDLPPYIKSLPNISRFKKAMYQVFSSQ
>Crack-9_BF_pol#LINE/L2 1-3165  [Branchiostoma floridae]
MASCLYANLAVLAAIFLQFTNPVTELKCISSSQPNPCEVFCSRFNFTAISQADHVLSLLYPTGHITRIARSKKDIHVKTS
VNLAHLCIHTLLLLSGDVACNPGPNQSEDNVVANVDWQPLFERIKSKNGIKMVHLNTRSFLPKLDEIRMAMTDNPIDILT
LNETWLDSSIDDNELYIPNYTLYRKDRNRHGGGVACYVTDELQHKLIPELTELDIESVWVEVKHTVGKPIVIGSAYRPPN
ATTQFFETLETAMTTATAISDEVFLLGDLNCDVLTKGACKKIDKICSTFQAKQLIDEPTRVTETSSTCIDIIITTSPEKV
TESGVCSTGLSDHCFTYAVRKAKRPPGNPRTATVRSYRRFDESAFQEDLRNAPWSKVDNCSNVDDALSCFQTMLTNVCDD
HAPWVSIRIRGHEPPWITQEYLAMAHERDFYFDKAKKTKLTSMWETAKKLRNKCNNMARYLKKQYYCNEIETKGKDSKSL
WATLKTLLPSQAKQPVNVPKQQQKSIANKFNTYFTSIGSKLAAAFTGAYRAVLGPAQFSFKFTNISTEFTYKQLMSIPLG
KSTGLDGVSSRLIRHAAPIIAGPLTHIYNLSLTTGEVPKDWKRAKVTPLFKDGDKTSCSNYRPISVLPTFMKIFEKAIHT
QVYTYCKDHKILNSFQSGFRPAHSTTTTLVHVTDSIIENMEKGLVTGAIFLDLKKAFDTVCHKILLLKLRMYGVQDKELT
WFCSYLTSRYQTTVVNGVQSDFLEVTVGVPQGSVLGPLLFILYINDLPDYISHGQVVLYADDTALFYASKTVRDVNTCLN
ADLRNIETWLHTNKLTLNVTKCKAMLFGTARRLQSSTEQLSTTLSGTSLEVVTSFKYLGVWLDPCLTWEVHIDKLCNAVS
SRLGVLRRLIPCLPQRTLVMLFNAMVLPKMDYCDVIWGNCGKCLSDRLQKLQNRAARLILGLKYTHHVGVDELSALGWKT
LTSRRNLHLLQSMYKAVNNELPDYINSFQRTSDSHSYPTRHSQNLCLKLPLVRLECGKRKFSYRGITAWNSLPPSVKTCT
SKSTFRTNCRAWLA
>Crack-17_BF_pol#LINE/L2 287-3310  [Branchiostoma floridae]
MDTHEYFTLANSDQYWYCNPCMLPCFSDSFFDSSSNDNSTSSSVSDIVNDEEILESTDKIPPSKGLTIVHLNICSLYSKL
DQLYVFMSSNNVDVMTVSETHLDSTILDSELHIEGYHLYRNDRNRHGGGVAIYVSEAYSHTEVPELKQPGLEAVFCTVNI
PYTKPITIASIYRPPSSPVEFFSLLRDALEKWSLTKSDSELFLLGDFNVDINSNSSPGAKSLKYLSREFQLQQVINTPTR
VNQHSSSLIDHVYCSDIHRVNDYGVVNCTLSDHYAVYCIRKGKRPNSAPKYVTSRKFTKFQEEDFLTDLKALDWSPVYQA
TCVEEAWSIFKSFFITISDIHAPYISKRSKAMQPPWLSADIKKMMFERDKMKARARKTGDSTDWEGYRATRNKVNRLVKQ
AKANYCQHKLENCSSEPNRIWTAVKEILPRKSSVITKTLNWAGQHLCDPLSIANCFNNFFVTVGRKLAERFTQQTLTLQC
PTVYRQISSTFQFKQVNDDSVYNKLSTLSNNKATGLDHIHSRLLKAAAPCICKPVTHIFNMSLSSGHIPKEWKRARVTPI
HKGGDQDDPNNYRPISVLPVIMKAFEKEVHGQFLEYLHQHQILATQQSGFRPGHSTATTLIDATDYMLHNISSGKLVGAV
FLDLKKAFDTVDQNVLLQKLSWVGVHGVEHHWFTDYLAGREQTVSLNGCESDFLPVTLGVPQGSILGPLLFILYINDLPS
SVSTVCKVCLYADDTAIFCSSKDARVIENTLNSELANLATWLHSNRLTLNVAKTKWILFGSSGKLRAVPPLRLQIDQETV
EQVYQFKYLGVLLDCNISWNEHIDMVCSKVSQRIGLLRRLRSCLTVNIASMLYRCMILPLLEYCDIVWENCNITKQRQLQ
VLQNRAARVILQMKRRSSVQDLHSRLNWKYLTQRRKEHMCVMVFKCINGLVPTYLDTTFVHNHLLHSHNTRQASLLHKPN
YTNTAGHRTFAYRGATYYNTLSADIRHAPTLRQFKAALRHTPPHMDL
>Daphne-1_TCa_gag#LINE/L2 7-958 1 frameshift. Resembles Proto element gags. [Tribolium castaneum]
MAGDATQQANVLCKKCGSKVVNFVKCKLCQHQFHPSCAKILNATFHDNKSITCCEKHEIFEDAYDGKTSDDEINWENVSP
QLFSYIIKEKDALIEELRXVKLHYCKFAFKKKNKSLSPKKHSPPMIAGQSPPAHTVVDNKSAGRNKNEIKNKDKLNKVVF
EKDQLQAQSNTTATKIVENNKKSMPRHETPKNEDSVIEERKNDWKTITHKKLDRKQQRNAVIGTHACDKIKTAPKKAFLY
VSRLYPETKSEDLVSLLQNTFPEVTCMKLDSKYPEYYSSYKVTINLNNLEHAMKSEIWPEGSYVTRYFHPRRSKTSSQ
>Crack-20_BF_pol#LINE/L2 2-2479  [Branchiostoma floridae]
EKENADIAIMGDFNSDLLNSTHSMSSVEFLMGLYQLEPVIRQPTRITETSESCIDNIFVSNPDKYKSSASVAWGPSDHNL
IMTCAKAGRVAGAARRCEYRSYKQYNQQPFIDSLKSARWDTVLDCFDVTEAWNAFKDIFLTVADEHAPLRNKTVRENNHT
APWLTDRVKNIMGRRDAARRKAIKTRDVKDWEIYRSLRNQATSVIRKEKKSHFAQAVTEAKGNQSLMWKIINNFTGKSKP
NSVVSHLERADNTTTSSPCEIAQDFNEYFTSCATRLVDGMPASQEDPLRNMPEPTKTFSFESVDEVTVLNELQRLKTKKA
TGMDKIPSRLLKDSAPVIVKPLTHIFNLSLSTGEVPTEWKEAQISPIHKSGTRANVANYRPVSVLSVTSKVMEKLVSYQV
SRFLDRNDLLTEHQSGFRKHHSTATAVQKIVEDVKSAFNSSKVTVALFLDLRKAFDTVNHNILLGKLKKLGFDSDATKWF
TSYLSDRFQCTQIQGQHSTKALVTCGVPQGSVLGPLLFCIYVNDLPNVIEKSSIHLYADDTILYYSASSVKECEETISSD
MXRVAXWLKENKLLLHPDKTKSMLFGLPQKLRHTGRSVNITDGVNVYEQVQSFTYLGVTLDPSLLWTSHAGKVMKKILGG
LGAMWRAKGFVSTEILQTMCQTLLLSHLDYCATAWLPSLIQCNKGQTAKLDRLLNRAARLITGYRLQDHVPVHTLLTAAG
LESVRKRLETVSLTTVFKSVRGRAPSYMSTLFRWMSPPTLRVNTRAASTRLRDYDPHLLQLPHVRVTSFRGSLQYYGVQL
WNKLSHETRSMMKFRTFRRQLHLMA
>RAVLIN_MT_pol#LINE/L1 72-3588 via tfasty with ATLINE1_11_pol, 2 frameshifts and 3 stopcodons. [Medicago truncatula]
MEEFLNGQANNLYHIPTRAEYTWSNRRGDGSIAQRLDRAICNEQWIVVLLLVQPLIKHNLTIILFYCSKxPLSFASQFKF
LQMWTPHDDCKKMITSSWNTNIVGCHMYILNYKLKNLKTKLKVWNKTVFGDVHXAVKIAEQNLNQIQNDIDLQGFTDTLL
DQEKEAQINLELCLKxQEDFWREKAKVNWHLNGDRNTKYFHRITKIKKTSKLITTLQDGDNMITDPDQIANHIINYCKTL
FSTNFVLQDQLLVDEVIPTLISDDKNAVFTTLPSSLEIKXAVFDMNKDGAPGPDGFGALFYQTYWDIVKKDVVNAVLEFF
TRDWILPNFNSNIIVLIPKIPDATSMGQYRPIALANFKFKIITKILADRLAQLMPKIISTDQRGFIQGRNIKDCICIASE
AINFFHKKSYGGNIAFKVDISKAFDTLDWNFLLHVLKSFGFNEIFCNWIHTILQSANLSIYVNGKPDGYFNCTRGVRQGD
PLSPLLFCIAEDVLSRAISKLVDQGKLELIKGTRXVNVPSHSLYADDIMIFCKGKNASISNLIDLFNIYALESGQIINSA
KSIMYPGSISVSRIQQLSTMLGFNIGSFPFNYLGVPIFKGKPKASHLQPIADKIKSKLATWKASLLSIAGRVQLVKSVIQ
GMLMYTISISILGPRLCVNDVETWSRNFIWSGDVDKRKFVTVAWKKVCKPFSEGGLGMRSIYTLNESTNLKLCWEMLNST
EDWAILLRSRVLRGRKAISHHIFSSIWSSIKNEFNDINNNCIWLLGNGQNINFWLDNWCGAPLSQALNIPHAISVHLTST
VSDYIVNGEWNIPETLSQMFPLLSQLVQQVTIPLEAKDDKIIWKHSANGYLSFKQAYVFKRNNNEDLKWAKLIWSTDIPP
SKSLLVWRLMHNKVPTDDNLMDRGCQLVSMCYLCCKNSDSFIHLFFDCPFALKLWSWLSASLNMNMQFTDLDDIWKIFER
TWSPQCKIVIKAALINIINTIWFRRNQARFKNKLIHWKSAIxMIIAKISLSGNITTKASKGDIREFIILKAFKVNINPPK
APIIKEVIWTPPLTHWVKGNTDGASIKNPGRASSGGIFRDSEGICIGCFTQCLGNLNAYHAELVVAMTAIEMAYQKHWKF
LWLETDSQLVILAFKNSTLVPWNLRNRWNNFQLKLTNMNFVVSHIYREGNXCS
>ATLINEIII_gag#LINE/L1 160-1623  [Arabidopsis]
MLPAAAPPGLSGEVPLREGSPVSSPVSLERQDGDLIVSNQSTYRVLLVSDSDQFPALSQSALETTQRMSHPPAKKSWVNA
ARKHTFTQQKFVSEEVDGQATVVVPKEVFLGAKPLWEDFLIGHFLNAKAPHVGKIHMIVNKIWRLGDKSNLIDVYAVNDS
TIKFRIRNEAMRRRALNRGMWNIMDLPMVVSKWSPFAEETQPAMKSIQLWITLTDVPPSLFTDKGLEFLASAVGKPIRLH
PKTESCSSFDEAQLLVEADLTKELPKEFVFTGEEEGELAAVIKYSYPWLPPRCSCCDKWGHLRDSCLSALKTCSRDTPNP
DPIHVEETETGQVLSNSQTAASVTAECVTENIPIIPISEDGKEEEKGAESWITPKFGRSPPKKQEGLQFGEVSILSNSYS
ALNGKDESGEDIITADSVEKQAEETQNSTQDPPQEKVENQNRLAKKEMILRHSLPRGSKSAHKVLSNPSTRNNPKDQSKG
LPPKHH
>38346464_Osa_pol#LINE/L1 Genomic ORF; L1_Td-like partial protein [Oryza sativa]
MDHNKAPGPDGFPVEFYQKFWEVIKHDLLNLFNEFHSGSLPIFGLNFGVITLIPKVEEANRIQQYRPICLLNVSYKIFTK
VATNRISSVADNLVNPTQTAFMRGRNILDGVAIIHETVHELHRKKLNGVIFKIDFEKAYDKVKWPFLLQTLRMKGFSPKW
ISWIKSFIVGGSVAVKVNDDVGPFFQTKKGLQQGDPLSPILFNFIVDMLATLINRAKTQGQVDGLIPHLIDGGLSILQYV
DDIVLFMNHDLEKAQNMKSVLLAFEQLSGLKINFHKSELYCFGEALEYRDQYAQLFGCQVGNFPFRYLGIPIHCRKLRNA
EWKEVVERFEKKLSSWKGKLLSLGGRLTLINSVLSSLPMYMMSFLAIPSGVLKKLDYLRSRFYWQGDGHKKKYQLAKWDI
ICRPKDQGRLGIHDLEVKNIALLSKWLFKLLTTNGMWQQLIRNKYLGSQPLSQAYWKAGDSHFWDSLMKAKQDFFRFGSF
RIRDGSQIRFWEDKWLGNASLRDQYPCLYNCYS
>ATLINEIII_pol#LINE/L1 1623-5294  [Arabidopsis]
MSGFFWNVRGLNKSNKHSVIQKWVDEQNFQFGCLIETRVKEENSQWLGSKLFKDWSMLTNYEFNRRGRLWVVWRENVRFT
PFYKSDQLITCSVKLESQEEEFFYSFVYASNFAEERKILWNDLRDHMDSPIIRDKPWIIFGDFNEILDMDEHSRMEDHPA
VTSGMRDFQSLVNYCSFSDLASHGPLFTWCNKRDNDPIWKKLDRVMVNEAWKMVYPQSYNVFEAGGCSDHLRCRINLNMN
SGAQVRGNKPFKFVNAVADMEEFKPLVENFWRETEPIHMSTSSLFRFTKKLKALKPKLRGLAKEKMGNLVKRTREAYLSL
CQAQQSNSQNPSQRAMEIESEAYVRWDRIASIEEKYLKQVSKLHWLKVGDKNNKTFHRAATARAAQNSIREIQKEDGSTA
TTKDDIKNETERFFQEFLQLIPNDYEGITVEKLTSLLPYHCSPAEKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEF
YKRAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAG
NQSAFVKDRLLIENLLLATELVKDYHKDTISGRCAIKIDISKAFDSVQWSFLKNVLSALDFPPEFVHWVMLCVTTASFSV
QVNGELAGYFQSSRGLRQGCSLSPYLFVISMDVLSKMLDQATEAKQIGYHPRCKSIGLSHLSFADDLMILSDGKVRSIEG
IVKVFDVFAKSSGLKISMEKTTIYLAGTSEVSHQWIKDRFSFDVGTLPVRYLGLPLVTKCLTAADYLPLIEQLKKKIGSW
TARFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIREIDKLCSTFLWSGPDLNSHKAKVAWDDVCKPKKEGGLGLRSIK
EANDVSCLKLIWRILSRGDSLWVKWVETYLLNTESFWSIKESTSKGSWMWRKLIKFKDMAKQFCKKEVNTGRNTFFWYDD
WSTLGRLVEIAGDRGTIDMGISRKMTLEEAWNGRRQRRHRDNVLNQMEEALELTRQRRNGNDDVTLWKGKNDDYRHCFST
KETWNNTRTMGIEVPWHKGVWFTHSTPKFSFCVWLAVYDRLSTGDKMLLWNRGLQGTCLLCRNATESRDHLFFSCSFSSE
VWEMSAKSIYKSSYSTDWRHLLTKIQENWKDRVESFIARYIFQVSVYAIWRERNRRKHGRNPNQAAQLVRWIDKQIRDQL
SAIKLMGDRRYDQGFQFWLNSSS
>L1-1_VC_pol#LINE/L1 2122-6819  [Volvox carteri]
MAQPTHPFSNMSCPRANNGTRQRGATRGHPLRIATHNVQGMTARHRPKVHAAVKLWAEMGLDVVCLQETHHTNAHDQGRL
ENELNLATQAAHTQGWKVAAYSWSDSPHKAGVLILVRRDLATNLEKPPPTPGVRGRFTSCVLRWGGHRIHICNIYGPTGT
SAHVNPLRQQLFTTTLPATTKHAAENSDTMLVWAGDFNFVEDPGLDSTAGPGGRRGDGPTVDLLRAAGPTMVDSHRQLHP
HSCDYTHFYRAPCVGASRLDRIYVDHGTMPYIAKTEIAVQTPSDHKPMVMHLLPCRPESKGPGNRRVRLAFTSHQDLAAS
MEAWITSQCATAPSAEDNPLGLIAWWPGFKRRLSTLALQLNKAAQHRKLRPGARAREVLPQVQLARQAVDAAPTAQQPLQ
QLVEAQAMLARAHREDCRKDAMEARTHWLRAGERPSPSLTAFLQAQAIDQQPAPVALQALSGRLVTNPAQLPQVVADFWK
DVSKAPDFICPQARQAVLNSLTAANIKFPAEADEQLGAKKITATELRKALKKSAPGKAPGWDGIPADIYRKFWSAIGNTM
AGLFTAIGTTGQVPAGFLEGIITVLYKKGDPKLPGNYRPITLLCSDYRLLAKVLANRLGPALGRVITPEQSAFLPKRLIG
ASVLFLRHLSHLLRKQNRQGLLAFLDFAKAYDTVDRGFLLAAMEAMGAGPQLCAWVRLLLSETRARAMVNGYKSRLVDME
AGVRQGCPLAPLLYLFVAQALQCWLRSQEVGIKLQPSDPNPVTACQYADDTEVALDGAESVPSFLQAMETFARASGQRLN
LEKVELLWIGQQRQQQQQPAPAAGPQLTAPQQETIGGLKVVTTATALNLPIDNQVTPPQPDWTKRMGEAKRRMQRLSRFP
LSAFGRATAASAYGLQTVTWHMEHGGLAPDRVLDEIERLTARLVDRQQGPDDPGRRLTGVPKELLIGHPSTGGFGLLPLR
QHIQARHAVWAARFVIATLGLRTGNTRSDTGATDTDMQVGGGIHPWVRTLSAYLLLTNPAFQPWALTTASPTGPWLGTRD
LPKDISRIVGALGHLPPPEDIGTNPLTPGDWCWATALWGNPLFPNAGGTDPTDRGRRPGLEYQYPGLATCRKLQTVGDLV
RVWTLAESSDLATLPRTVWLEWARTHLDPLTPISTRDKPVTRAALAALHSSINPAWLEAARTVETRRQQQQQQQQRGLTE
PMAAATEGEEAVIPSPAPLLTSMQAMGMIAGRIGWRIPGMAEATPLARLTVRLATQLQCGPMEERRRRLVAEFVREATDP
QGPSPPPPSEISLFRATQARVWSGVRWENENKETLWRLAVDGVALPGNTHLARMTPERCGCGGFGGAAGQPCSPRMHHFW
ECPVAQAVRAQIDRHLQSSQEAAVGGVTRKQLWLLLAPTGCEQAVWDIIALSALSAMEVGRCCLRAAGRRQERAGSQGPQ
NREHAQQVQVPGPRQRRITDFFIQADGAGPQTGPALNAPGDEDQTQERNTATGAVAATAGAAAAAPAATPLERACARAVV
DFWARLRSFTALGTPRRGWDRVGPDHPILSVSEGALRCAEAVEIIA
>L1-1_Acar_pol#LINE/L1 1631-5386 [Anolis carolinensis]
MLMGDLNIMSVNINGLKSEVKKHRLSKLLSENQIRVALLQESHRQDTRTKLLNFTNWETQFESKGSSRSRGVAIIIKNDL
NFETGKVITDGEGRFIMVCGKINNCKVSFISVYGPNQRQKRFINKIFKKIDQEAEGDIIIGGDLNLDLYKKRKNGEKNKV
NFKKWNIQEVNERTGRRVDTPTFYSARHNSFSTLDYFFVGNNNAWPIIETSVGSRWPGDHAPLFLKLGISSRKIEYKWRF
NPLVTFKDQDKQELKEEIKHYFRINRSPDLKENTIWDAFKAVIRGKCITMEWGIKKRLKERGEELKQEGDKLFQNFQKNP
SVQNKERWKENKKVLEDLEKIEVTKKYLFVKNDFHVNSINNTKRLASYLKKKKGRNMVTKLKDENGQIKTKEEDLREIMA
SYYEKLYANKETERSEGVVVRKLDPQDQIGLNKTITSKEIEEVINNLKPNSSPGPDGFTSNFYKIFQSEIIPNLEILFNE
ILKNRTIPETWKRSEIITILKPNKDESDPNSYRPITLCNVDYKIFTKLLANRLTDIIPKLIGEDQYGFIKNRRLADPIRN
ILNVINQATREKEKLLLLKLDVYKAFDTVNHHYLQQVCEEYNLGREFCEVIKELYKDNRAQLLINGTRTRIIKINSGTKQ
GCPLSPILFALAIEPLANFIREDDKIKGFKIARELIKINLFADDAMVLMGSPMESIKEVIQTVKKFENLSGLAINIQKSE
ILHKNLSWKELKEIQTISGIRLGEKKLKYLGVYIPKNLNNIIQLNYNHLWKKVNNQIRNWNNRNWDMSNKIKIVKMMVLP
KFLFLFQALPYSIPSKIIKKWDNSIKTWITGRNKNRIPNSVFYSSEQNGGWGAPNLQDYYEACQLTRLLELDFDDSRRWV
RIEKTINGWHNCLCLKGWVDNKILKEIKGGPMISSMECWKKWQGKLPINKVDILPIEFLNNKKEQIFGKAITNFKQNGMK
LIKDLLNPDGTIKDWEMIKDICGQSNWLLWSGLKQRIMNWKKKEGPETDFDQILKWKLEKEKGLMGFIYKILTEKQYKLK
QTLAEIWKEDMNINDSDIEYWINSIKKIKQIRIRETQRKILTKWYRTPIQLAYITKTTTKLCWHGCGKTGSYIHMWWECD
KVQKFYNKVKKEIEDLTGHKLILKNKEFFIQKLDKNKITKDWGEIIKYMLVAAQATVALGWKEQTKWEVKKWYEYLADFM
LQDYILERRTKYISGRIKKNWELKWGRLIDRVKGQRKYKELNHSLLTIDQLK
>37718853_Osa_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MQECLSKFYCEICESEDHIVARCPIFRSSVKPSAQLCGYAGDGLGFFHIPLSAGQKIKHEPRAALIKVSKGQMTVNAVIS
ELERLIPGGWRWVVHDNGNGSFRTIFPSAAELKRMVEWGKVHTKVGDAEMQIVERGVGNEVKYVIPKVWVQCKGIPSELR
EYLIIWAVGSILGITKTVDMVFTRRYDIARLQVLVLDPSLIPEVVDVVIGDYLYELAFRVEPENGPEEPIPMDMDNIGDG
DFEKKNDGNEKGDSGKEPGPGGSSQSKLGSGSMFYEKGGPSLHSIQVGLTADSGGLNLSDEEFDGLHDDVIGVERVQSQE
SLVAKLSAIPEAAVSPSRRSKRRASDSDQLVLQRAEKSKADKNLENLHVKGNLINDVSFLHFSNDQISASIKSLGIITSS
PNVVLDDVINDLRSMEENRLSDHVRLSTTKGFSNNVDGDLVDDHFDDNFLLQHLCSEIMEEVMDSGGDCDNCLQTTLDSR
DSPSNSKKKGKKGKNKKEKK
>2618693_Ath_pol#LINE/L1 gi|2618693|gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase  [Arabidopsis thaliana]
MLRLVECRKAISQWKRENDFNAKSRITKLRRELDKEKSATFPSWTQISLLQDVLGDAYREEEDFWRLKSRDKWMVGGDKN
SKFFQATVKANRVSNSLRFLVDENGNEQTVNREKGKIAVTFFEDLFSSSYPSSMDSVLEGFNKRVTEDMNQDLTKKVNEQ
EIYKAVFSINAESAPGPDGFTALFFQRQWPLVKNQIISDIELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCS
VMYKIISKILSARLKKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKG
ILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISGIQFNG
TGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYL
GLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSVQ
DKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSI
LYGRELLVSGLKKIIGNGENTYVWMDNWIFDDKPRRPESLQIMVDIQLKVSQLIDPFSRNWNLNMLRDLFPWKEIQIICQ
QRPMASRQDSFCWFGTNHGLYTVKSEYDLCSRQVHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAVAVED
RLRTRGVLIEDGCSMCPEKNETLNHILFQCPLARQVWALTPMQSPNHGFGDSIFTNVNHVIGNCHNTELSPHLRYVSPWI
IWILWKNRNKRLFEGIGSVSLSIVGKALEDCKEWLKAHELICSKEPTKDLTWIPPLMNELKCNIGIAWSKKHQMAGVSWV
VRNWKGRVLLHSRCSFSQISSHFDAKIKGWNYAVESMDQFKFDRVTFGASTHDIIKAMHKPNQWPALRAQIDDLLMRAKD
KELWFMAMEPHHCNEGASEIAKSVITGMRWQSYVASGYPRWLQNFFEAEGNLSR
>Vingi-7_AMi_pol#LINE/Jockey 3-2283 via tfasty with Vingi-1_EE_pol, 3 frameshifts and 2 stopcodons. [Crocodylidae]
KXIGLCLPVISSPKMMRWSFCKADWPKYSETVDHSIVTVPIQNTSVEEADKHVCGAIYKASCTAIRPIYIPCLDVESAAL
LKEYESSGDPDVADHLIESLNAAHCAKWEETTAELNFTHSSQKCWSLIHRLGAAQKPPAPNCPLVTPNQVASHLLHVAKA
PLEKNTKRTTHHELRQYRKQHAEYNSPDPFEVTELEKVLNGLKHGKAAGYDNISPEFLKRLGPRARAWLTQFYARIISSR
SLPKKWMAKVIAIPKLGKDLTLVASYRPIALLSVCYKVLERLILQWISPEVETILSVDQAGFRKGRSACDQVLALTTYIE
NGFQKNLKTGVVLLDLTAAYDTVWHTGLLLKLSRVLPSWVVIVVETLLRNRxFRVHLGQGISTWRRRANGLPQGSVLAPT
LFDLYINDLPTTTSRKFIYADDICCATQAPSFCTLDQTLNEDVTKLADYCTTWRLTPSPAKTVSSVFHLHNASAKKELNI
YMGGQRLKHDPCPTYLGVSLDRTLTFREHLKKTAAKVKSRNNLLAKLAGSTWGAAATTLWTSALALSYSAAEYCAPVWRK
SSHTHLVDTQLNATMHIITGTLRSTPLPWLPVLANITPPHIRRLMMTRKLVETIRAAPYLPLYDDLFNPPKARLPSRCPL
WSNLPDQDLSAEALWIKEWESREVTNKFLVTNPTHQPAGFELSRxEWSLLNRFRTGQGPCAANLHRRGLSANPSCTCGEI
QTMPTSPRSVPSTNLRGGLITLNSVNEEAIAWLRGFAFAK
>22208464_Sbi_pol#LINE/L1 gi|22208464|gb|AAM94293.1| putative reverse transcriptase [Sorghum bicolor]
MILEASYLDSVPTAPDDAHVAPQSPAYIPVSALWWGNKQTNCTPTVQDEIVFGPGVQQQEPGGSQAGSMDEVGVISGLVT
KMDIDTATERGPTAAAMTSSPAGVPPPPPENQQPPNLYTGLFCELPAPVLQAPAPGEPAPRARKMKKPTVSTRSSSRLAA
RPSAVPVAQRAQRKLMQELSFIDNNQQQAPDAAVTEYLDLYADDLPEQAVKAIQTAARLGNKRLVKILEAVETKLDAIDG
LLAMEFLGNNYYSSFEFLPADNTRGGVLIAWDQDYIRGNLVRQDRFCLSIDITLRLTNHSFVLTTVYGPANNTEKNSFLA
ELIRCQPRGRPWLCLGDFNLICEAQDKNNNNINRAHMRKFRQALDASELLEIKLQNRKYTWSNGRKNPTLVHLDRAFCNL
DWDEIFPSATLIALSSSLSDHCPLFLCNQQQPHRRATFKFESFWVRVPGFLQIVQTAWALPVRGSNPLTLLHNRLRNAAE
ALKKWSKSLFSEARLQLELANEVILRLDIAQESRPLSDAEVDLHRQLKLQLLGWAAIERSRRRQSSRIINIKEGDACTKF
FHQRAKGRRKRNLITYLKNEGGLDQPFTLEELKHTVDELPAEKAPGPDGFNGLFYKKCWEIIKTDILAAMNSFHSLRAGP
MRSLNGANITLIPKSDNAEDPKDFRPISLIHSFGKFVTKTLAIRLSPHIDRMISNSQSAFIKHRCIQDNFMYVRNLARAY
HRKKIPALLFKLDISKAFDTISWEYLLELLEQRGFSARWREWLTLIFKTSHSTVLLNGTEGRQINHVRGLRQGDPLSPFL
FILAIDTLHRILEVATANGFLSPLRGRNARLRLSLYADDAVIFINPIREEVTALFEILEQFGATTGLKLNIGKCTVAPIR
CAEINLDHVLEGYRGNKTNFPITYLGLPLSLGRLKVVHLQKIVDKSRSRLAAWQGRLMNPAGRRELVRSVLSSMPVYLMT
TLKAPKQLIADIDQMRRRFLWAGDNEISGGKCKVAWTAVAKPEEFGGLGIIDLDKFSRALRLRWLWFQWTKPERPWNGSE
LPVNADDVALFNAATTVTVRDGRKASFWHSSWIEGRAPASLWPRLYAHSRKKNRTVREALLNRRWVSDIAHNLNQDLLKE
YFEFWLAIDRVRPALDEAGGDIIIWGLESSVCWPSPIPFPSLNLESLGTAKVQILLMAAVKNRLWTSARLQQRHWKNNYF
CALCERNLETAHHLFFECPYSRLVWQAVSSWSSCPSLQPASWEDRSRLEDCFSQTLTTGEKKAHTLAILTLWSIWNRRNA
VVFREDRKTTISLVVEIKDMARQWSLAGCKALRPLMVAHVISE
>31433139_Osa_gag#LINE/L1 gi|31433139|gb|AAP54692.1| putative reverse transcriptase (first 433 AA deleted; could be gag?) [Oryza sativa]
MEFYSDLLLGYAGSAPAFGKAVTIRSHPKVGDPVDWLLRGKSKPIKGRLAGADMIHIGLPELGSRWGRQRDRHGDGYPPE
ADDGWQGWIVEFGAGSGGIAGAESRRGLGCGREGGGGAQTEPDPWKYIGCGWDSKGPATHIEGDILEDEDDVVEVSLDAD
EANLVGQWTVLARYYSLKTPNQNALFDDMRRAWRLRADMNYKSLRDNLFIVSFSSEGDYKFVKDGGPWLHRGDALLVAEF
DGLTSPSQVPLEVVPIWVRIYDLPLVLMTKDRGILYGSKLGHVREVDVEADGRNKHDFFRIRVDLPVNRALKTHIAIKIN
VQGNEEAFERKINTVKAVQSSGVARKLSFSGAGSASSTSSRHKKVEQWDEAVPPRMEAFDGFELNEKEGDANVDLQLADQ
TRNMQVSGGGSQDAEGLTKGRKTKQARPAPSGA
>31431911_pol_Osa_pol#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MKVLFWNIRGLGNSARGRQLRELIIEKEVDIICIQETKKESFSDRDLNTFQGNRIFNWSWKASRGASGGLLLGVNTNIAV
VTETHAGAFFLSNVIKLNYDNSCWEIMVIYGPVDNNLKQAFLDELNWHILYRSHHVVIGGDFNLYRFASEKSNTNTNSRN
MDMFNSFIANLDLREIYRSGPKFTWTNKQDSLVQEVLDRILVTTDWDDMYPTALLSSILRVGSDHIPLLLDTCEGIIVKS
KYFKFESAWLAEESFKELVIQRLLPRDNSYILEFWNKKQSSLRRFLVGWGKNNRSKKLREKRTLQCKIEELDKKALTEEL
TSDEWNQRYSWENDLEHIYEMEELYWHKRCGEQWILEGDRNTEFFHRVANGRKRKCHITSLMDGETELTSKSEIREHIVE
YYKTLFRDVPTANIHLSQGVWTNHLNLSDASKENLTRPFVMAELDKVINEAKLNTAPGPDGFSIPFYRAFWPQVKNDLFE
MLLMLHNEDLDLKRLNFGVISLIPKNNNPTDIKQFRPICVLNDCFKFLSKVVTNRLTEVADEVVSQTQTAFIPGRFILEG
CVIIHEVLHELKSKNSEGIILKIDFEKAYDKVNWEFLIEVMERKNFPKKWISWIKSCVMGGRVCININGERTDFFRTFRG
LRQGDPLSPLLFNLVSDALAAMFDSAKAAGVLCGLVPNIFPGGITHLQYADDTVLFVANDVNQIVATKFIL
>L1-1_XT_pol#LINE/L1 1780-5517 [Xenopus (silurana) tropicalis]
MASYSIVSWNIRGLNSKFKRSLMWSYLKRYPPSILLLQETHLVGQKVLALKKPWVGWSFHASFSTHSRGVSILIRKNIPF
ELLHLVTDHYGRYVIMACLIANKPITIVNVYVPPPFNVTVLEHIAKKLADLPPAPTCILGDMNQVMDLFWDRLHPTSSGP
TNLTQWANSLGLTDAWRWKHPDDKVYSCHSQPHKSFSRIDLALTSPDILPLIEHASYLPQSLSDHSPLQLIFRWLPSPPD
KLWRLSPLWLKHPDILEPHIEAYQEYWDINSGSASQGMVWDASKAAARGSLMTSVAQVRTAAKEAVATAENTLTQAQQQH
YNNPSVNTYEEVRRAEAALARESTAIAKKALLYSSQRIFDKGDKNSKTLAFLAKQQQPSTAVPRIQSQEGRMIYEPHLIA
ETFAKYYENLYNSTTSCTIPQLNSYLDSSAIPTISPAERAWLDLPITVXEIERAIQSLPSNKTPGLDGLPPDWYKSLNKI
IAPRLLETFQAAWDSQSLPPSFHEALIVVIPKSGRDPTLCSSYRPISLINTDAKILAKILATRLTRAIQDLIHPDQSGFM
PGRATDFNLRRLFTNLQLPHTNKGSRVVASLDSEKAFDSVEWNYLWEVLHRFGLGTKFIQWVKLLYKSPVAKVRVNNFIS
PPFQLRRGTRQGCPLSPILFALAIEPLAITIRECASIKGLQFANITEKVSLFADDILIYLADPLESLSTMLTVVQEFGKY
SGLRINWEKSQLFSIDPTPHIPPPQQTQLKWVTSFKYLGIWIHPDPQLFLQLNLDPIMDSLSQVLKTWAKLPLTLWGRVN
IIKMIYLPKFLYIFHNTPFTIPRSFFKKLNRTITSFIWANGTPRISWERLTATVENGGLALPHFYFYYLASQIYYIHWCL
APNPYNPNTQLQASILHSIEGLSTYPYRHHTDMTNLPHTLLTPHKAWTTALKTMHHPWPLLSPQLPLWANSLLPDLQELQ
DYTYWPRLGFKKLGDLTLGPQFPTYQDLQDRALGKQIQFYRYLQLRHAFHAQFHTLPPTITTVTLEDILLSPSPAKLLSR
LYKEIMTTIKPPFDRAYRLWTQDIPELAQDQWEEATENAYNFLIPIKDRLIQYKFLHQTYITPLKLMRFGRRQDDLCPRC
KSPGANFFHMIWSCPPIHEFWSKIMETLASELGTPQIVDPITCLLGVIDGILSTNVARVRLRTLMFYAKKTVIMHWMGDT
LPSQTFWRRLVDGALPLIKLTYETRGAYDKFDKIWENWYNQDNLDT
>L1-5A_XT_gag#LINE/L1 190-1113  [Xenopus (silurana) tropicalis]
MGKHTQRARSEAAARLEKFARSPSQPPPDESSCQSSASEPTGPTQPPEHREPTLGDLLEAIQESRTATTAQLEGIKIDLS
LLRHDLQNLRDRTAAAETRISTLEDTVSPLNNEIPTIRQQIQALMGKTEDLENRLRRSNVRVVGLPEKAEGQQPEAFITK
WLTDTLGADTFSPQFVVERAHRVPPRPPPPGAPPRPFLLKLLNFKDRDAALRAARLKGPILYNGTTISLYPDFSPAIQKK
RASFTGVKRRLREANIAYSVLYPAKLRIQDGERTQFFTTPAEAEDWLTRRGHRQPSPRARGTPPNSPR
>L1-4_STu_gag#LINE/L1 144-2091 via tfasty with L1-3_STu_gag, 1 frameshift and 1 stopcodon. [Solanum tuberosum]
MGENKIYFNAGFKSFDITKWNAEGSVWYEWVERSRRMMRRTTISSKAMDWICSLLREASTDNEKNIRRWRFADRKEEFFC
TRKHNDYGRYMSIIALNAGGRSVIIIPEPVLNAGWYDLAFKIENFIKCHKGPVPTILSRATDPKYPYAKAVRDSKWLTKS
HRGTEMTSKSDKxEDGLLSRCLVGHLEKASKESPSLSEIRRWSSSEWKKTFGVNIYELYGNMFLFEFPNKFMAEQTLQGQ
WKWKNLVFNLEWWSPTVGCEPIFMEVKKTWIRIIGVPLHLWSHQVFAEIGQLCGGWVATEEETELKNHMKWARILVADDG
RNIPKEVSIVRDGIKFFFPIWVESKARFEVLPEKASTFTGEDDSVINLDHNMNQRVIRSNLCVPAQKSLINRDSSTETHV
GREKLSKVVVPTDVCDSYIPLLMKDDALGLNERPEFLNEGTSGPDPASLVIFNNITISTQPIYREDWSLKDTESQFCMQH
RTEQSNVQEMSIISSSDVLIDAVLQTTNPKSQILIRDGMEKGVEEVACNTLEQRLVSSIEEWEVEEAEPLCTQQHLTTEK
EKEMSVWVKQNLIRLGKLLGADFQGHEQEALELLLQVDSARQARHQDAAVVCKKTRFKGSKELKSLVAFDVKFKSGGGRE
KGRNFLTIS
>L1-5A_XT_pol#LINE/L1 1707-5477  L1-5_XT_pol over 90% identical. [Xenopus (silurana) tropicalis]
MFGTSPRARCRSGEPILHLSPTTLMATCNIISWNIRGLNSKFKRSLLFSYLKKYAPSMVLLQETHLVGQKVLSLKRAWIG
WAYHTSFTTHSRGVSILIRKNTPFELTQLITDHYGRFIILACLVANRPITIVNLYAPPPLTTSLLDHIAKKLADLPLAPT
CILGDFNQVMDLGNDKLHPTTTGPTNLTHWAEALHFTDIWRWKHPTDKVFSCHSLPHKTFSRIDIALGSPDILPTIDTVQ
YLPQALSDHSPLQLTLRWLPSPCDKLWRLSPLWLQNEEVDKTNTAAYKEYWEHNLGTASPSTVWEASKAVMRGALSGAIA
LARNTAQESVQAAEKALADSQTQHFANPSPLTYSSLLEARAALERESTAVTRKALLYSSQRIYDQGDKNSKVLAYFAKTQ
HTTTAIPRIKTVSDSRDIAATFAKFYRDLYASKAHYTKTQLTQFLDKIPIPSLSPAERAWLNLPITPGEVQLAIQALPPN
KTPGLDGLPPDWYKKLADVIPTHLLATLQDAWDTGALPPSFTEALIVVIPKPDRDPAICGSYRPISLINTDAKILAKVLA
NRLAKVIEDLVHPDQSGFMPGRATDINLRRLFTNLQTPHREIGSRVIASLDSEKAFDSVEWPYLWEVLKRFGLGQHFIKW
VQLLYRNPTAKIRVNGIISEPFDLSRGTRQGCPLSPTLFALAIEPLAILIRNSPTIQGLTYANISEKVSLFADDILVYLA
NPAQSLPALLQEVQNFGNFSGLRINWDKSQVYALDHIPPVPLPPGMQLQWVQSFKYLGIWIHSDPTQFTKLNLDPLMDRM
ASTLKTWVKLPLTLWGRINLLKMAFLPKFLYVFHATPYPLPRSLFRKLNTLVTPYIWASKTPRISWQRLAAPLQQGGLAL
PHFFLYYLASQISYLQWQFCPNPYNPNTALQASLLDSIEGLSNSPYRHITDGGPLPDSIKTPHKAWATALKLMGHSPPYL
SPYMPLWGNSLLPHLKNLPDFIIWPRLGIKKLGDLVQGAHFPTHQELQSKEPQVHLHFFRYLQLRHAFQAQFQTLTPTLV
SLDLEVTLHQPIAPKLLSRLYAHLLEFNAKPFERARTLWTNSIPSLTTEQWEEATESCYDFQYKVLHQLYITPNKLHKFG
KVPNDCCPRCKSPQADFLHLIWSCPPIAQFWATVMNTIATELALPNVLSPTTCLLGTVEDILPTNAARVTFRSLTFYAKK
AVIMRWMGNSVPTLELWRQLINTALPLIKLTYETRGAHENLKKSGECGVSQIGPPTN
>L1-6_SBi_pol#LINE/L1 3153-6821  LINE1-2_SBi_pol 83% identical [Sorghum bicolor]
MKGIFWNCNGFADCKKYRFLNELTKEKNLDFIALSETGRANFPQSTLNNICAGRDYLWHCMAPRGRSGGMLLGINLLNFD
IGEIEEGDFFVRFKIRRREDDFKFNLISVYGPAQVEHKSLFLSEIVNVCSKEALPIIIGGDFNIIRRPQEKNNANFNNRW
PFLFNAVIDSLNLREIEMSGRNFTWANNLPIQTFERLDRVLVCTDFESKFPHTTVQALTREISDHTPLLFSTNNPSSNYQ
PQFKLELGWLLREGFCEMVKDVWQSTIVSGSPIERWQAKISRLRQYLRGWARNVSGVYKKEKETILNKLDALDKKAEIML
LTQQEVDLKHVLNERLSELLREEEIKWYQRAKLKHLLEGDANTKYYHLLANGRHRKTRIFQLEDGVNLITGDAQLKAHIT
GYYKNLFGPPEITPIELDETQTGDIPQVSELENEFLTQPFLEEEVRVAIFQMEHNKAPGPDGFPPEFYQVFWSVIKDDLM
ALFSEFHQGNLHLNRLNFGTIILLPKKKDARVIQQYRPICLLNVSFKIFTKVATNRLTSIAQKIIRPTQTAFLPGRNIME
GAVILHETIHELHSKKKNGVIFKIDFEKAYDKIKWSFLQQTLRMKGFSQKWCQWVQRFTEGGNVNIKVNDQLGSYFQTKK
GLRQGDPMSPILFNIVVDMLAILIARAKEEGQVEGVIPDLIEDGLSILQYADDTVIFMSHDIEKAVNMKLLLTTFEQLSG
LKINFHKSEIFCFGEAKEYEEFYSQLFGCVVGNYPFHYLGLPMNTRKLNNNDWKIIEDRIEKRLSGWKGKMLSVGGRLVL
INSVLSSLPMFMMSFFEVPRGVLEKIDCFRSRFYWQNDQHKRKYRLAKWEVLCQPKSQGGVGIQNLDTQNKCLLSKWLFK
FLNEDGMWQELLRKKYIKNKTLGSYVKKPLDSHFWKSLMNVKDSFLELGSFKIKDGSQTRFWSDTWLGNKPLKDKFPSLF
NIVRRKDDSVAQVLGSTPFNISFRRNLVGANLLAWHRIVASVQDLHLVDQKDVFVWGLNASGIFTVKSMYAALINNGVRV
SQDIWQTKLPMKIKIFLWYLKKEVVLTKDNLVRRNWSGDRGCCFCHFPETINHLFFDCVYAKFLWRAVHIIFGLPPPTNI
NDLFLRWTKLGTKKYNSLLLTAAASLCWAIWITRNEVVFDRCRPKSFLQVLFRGTHWLRQWAHLQRHDDQREQLNLVGQV
LETSALHFFSSNGWLSSSYIGHA
>L1-6_DR_pol#LINE/L1 1710-5474 [Danio]
MVNLNIMSLNVRGLNSPSKRTKFLDYLRRKNIDVALIQETHLRIADVQRLQNKHYIPIVSSGYNSKKRGVAILFKRNHTF
SIENLGSDNNGRMAYCCTNIGGKKLMFVNIYAPNSYDALFFPDITKTLLAYNEYSLIIGGDMNTVMDTVLDRSNPSIPMI
QPQSSKALNWFTKDLNVSDTWRLLNPNVKEYTYFSPRHKSYSRIDYILLSPMIFSCVKNIEFLPQSISDHNAITTSLQFS
TLTKPSRWRFNTLLLKNEEYISQLRSELTEFISINQNSVSNQDMFWAFIKGFLRNNAISFSARLKKNYLQQISSLEKRCG
ELERELEKKFATETQQKLKVERATLNDLLRQRTEYLMHITKHKYYIDGSKPSRLLALTLKKHEQRFNINAIKNSEQVLTS
NPSDINKTFKKFFEKLYSSEIQTNTDHLEKIFESLNLTKLSKEDADNLDSEITLDELHNAVRDLHTGKSPGIDGIPGELY
LVLWDLLGHIWLQTINKAITKGHFHKDLNTALITVLPKPEKDLFECSNYRPISLINEDIKIYAKVIAKRLQSVISKLIHP
DQAGFITGRLASDNVRRVLHVIAESGKLKKPSGLLLIDAEKAFDRLEWGYLWYTLKNFNFGDQFIKMIQTLYSNPLARVT
TVGIISDTFCIKRGTKQGCPLSPLLFNLSIEPLAQFIRQCKNITPIQLGSSVHSISLYADDILLFLSDLQNSLPNALTAL
NEFGRISGFKINYSKSVLMPLNPIGHNVTNNTNIKISTKVKYLGIELSPTLQLIPKINYMSIYSKVEADIQRWMRLPSSP
PARISTIKMNILPRINFISSMLPLPPPPNYWKKLDSILNKFVWNGKRPRVKWSTLQKNKTEGGWACPNFKLYHWSFILLS
VVKWFEPDMQCSWKEIEKDLIFPTRLQDFLFSGFNHRKCILRYGPILSYTLQIFKKVETYFPSRTTWHNHSPLWHNVNLL
SGRQPFNQPSWANKGILTLKDINGEKSILDFQELVNKFNISPNTLFIYFKIRAALKAHKTPWGKDLHTHPIVKWIYNAPR
KGTVSYLYCCLSNINAHSFSKERLWLSDMSRPNTTIDWETVWHNTFHASTNPNHQFIHFKTIHRAYLTTRIRHIIGLSPD
PYCKFCEPQRPDTFLHMMWECPEVQKLWDSVLDILFKVTKICFPKDPILLLLNDNSQFPLNAKVRKFWLAASTATKKMLV
QRWKPPHDLSVKHWLHSLLEILYLELSSARINHAKVDILTAWKIYICNVKEILDT
>L1-4_EPa_pol#LINE/L1 618-4089 via tfasty with 25405244_Ath_pol, 2 frameshifts. [Eutrema parvulum]
MAYLFPFSFVEYLEMVGSDHRPLIAVLDDKLIKKRRNFRFDKRWIGQEGLQEAIEMGWKKTVGGRNGRTAFVTRIQNCRR
EVSKWRKQKKPYGKERIEELQKALDEALNDDSTTQLQILEITRQLKEAYVDEELYWQQKSRNLWYTEGDQNTKFFHALTK
QRRARNRIIGLHNSNGEWVGTEPEIERVAVNYFHDLFTTTEPGEFEEFLREVPESITEEMNGKLTAPASEEEVRQALFLM
HPEKAPGPDGMTALFYQNAWHIIKDEVTQLVNNFLRTGELDSRLNVTNICLIPKTERPTKMMEFRPISLCNVAYKIISKV
LCQRLRPLLPEIISETQSAFVSERLITDNILIAQEMFHGLRTNASCQGKYMAIKTDMSKAYDRVEWIFIEKTLQKMGFAQ
QWVNWIMKCISTVQYKVLINGQPRGLIIPKRGLRQGDPLSPYLFILCTETLISNIRRAEREKRLTGVKVARASPPITHLL
FADDNLFFCRAIKEECQVILDILKNYEMVSGQQINHNKSSLQFGHKIEDNRKDELKSVLGISTIGGMGTYLGIPESLGGA
KTQIFSFLRSRLHNKVNGWTSKLLSRGGKEVLIKSVATALPNHVMSCFRLPKSILTKLTSIMAKFWWSSGNNQKGMHWKA
WTKLCWDKKEGGLGFRALEEFNTALLAKQLWRLIEKPNSLFARVLKGRYYRNSGPLDSVKSYSPSYGWRSIVSARPLVNK
GLIKRMGTCTSISVWNDPWIPTNRPRPAICKTHNYYPALMVNHLIDHRSRTWNEQLIRAIIIPEDAEVILRMPISRTQKP
DSYGWHFTHTGKYTVKSGYHIIRSALKDEGLPIHGPNVLPLLAHAWDLKCPRKIKHFIWQALSGCLPVAKNLRDRGIQCD
PVCTRCGAEEETINHALFQCPPALQTWALSKIPSNPNIFPADSVFSNMDYLFWRSTQGHENNQFPWVLWYVWKSRNDKVY
NNLERDPREVIKLAESEATLWTEANTKTQTETIHGLSQEEGQHDFLTEHNDLCCFVDASWKEGNKFAGQGWTTTRLGAAG
WLGTRNTRSSLSPLHAEIEALIWAMECMHTAEQKEVCFATDCLQVVKMVSEPTKWPAFSTHMEEVQRCKEFFTNFKLRHI
PRNKNTMADKLARSARMQSSYSYHIGFTPPRGFLSHYK
>L1-2_XT_pol#LINE/L1 2128-5816 via tfasty with L1-1_XT_pol, 1 frameshift and 1 stopcodon. [Xenopus (silurana) tropicalis]
VLSWNVRGINDKVKRYxTLLESQGPDLILMQETHLVGQRVRALQRKWASAVYHADFSTYSRGVAILVRKSLNFHFEALVS
DRGGRYIILKGQIAGITYMIVNVYLPPPADIQILNEILQKVAALGNFPTLWMGDFNLVMDSAMDRLHPSTHDTRMFANWA
EATGLVDIWKWKRKQYSCYTVASSAMSRIDMCLGLRDILPLVTEIEFLSRMCSDHAPLLLSLNRSNSNSSGHWRLPPKWI
VNPKVEEWVFPQLTQYWDINQGTAEAHVVWDAGKAFIRGTYISLIKSVRQEYDLALSLARDALAKAETDLTLAQSDETKL
GMQTAQRDIDLRLTEKYSQRELYRTAAWYDKGDKNGKLLALLAKGAIPRTVIRSVMDGKNELPNPAQVTEHFWQYFKLTY
QVPLDRSMQGLNEYLNGIDFPEVPPDLARQLDKDITVDEVKEAINAFPSGKTPGPDGIPIEWYKKYVDFLSPKLAELFNG
TTQSKPLPDSCYDAYVTLILKVGKPPDRCESYWPISLLNSDIKIFAKILSNRLKLVIEELIHPDQTGFMPSKTTDINIRR
LFTNLTISHENAGNRIVVALDTAKAFDTVQWQYLWKVLTRYGFGPRYRNWVQLLYARPRAKILVNGRLTEDIPLERGTRQ
GCPLSPMLFALAIEPLAVRIRAHEPIEGLRIGNVTEKISLYADDMLLYLANSHQALANLLAVVAEFGQYSGLRINHSKSI
IFPIDPLPPGTPDHISQLQVVTSFKYLGITVHKDLNMFEQLNLNPVVQALTNKVSIWQDLPLSLPGRVNIFKMIFLPKFL
YALHNSPITPRMKWFNGVDKIIREFLWAGDHPRLNIKILQAPSSGGGLALPNLNFYFIAAQLVFAHWWMVPNVNNPAVVL
EAAILGSYEALSKLPYRGTSPFYTTTPLMATVVQAFQKSQKLVHGSLETWSPRTPLWGNKQLPHFHALPDIARWAQLGIK
TLGDILTGGECKTYDTLRQEVNPPPDMFFRFLQLRHAFSIQFPARPLRVAQTTMETYLHRLDLSKPLSWFYTILSASGPS
PLQKAKIKWQSDIPALDNDMWSDALKQVTEISICMRDRYIQIKFLNRAYLTPYRLAKIYENVSDQCPKCRSDVGTLFHVF
WSCPVIQRFWGEVLQFLNEKLAFPNIRSPELCLLGLTGDLHLHPYSRLCYLQLLYYAKKSILMHWKSLDPPPLQFWRKLV
DDSLPSQKLTYLARGCPEKFNAVWGSWLDL
>L1-2_GM_pol#LINE/L1 2202-5864 via tfasty with L1-3_GM_pol, 9 frameshifts and 3 stopcodons. [Glycine max]
MNIASYNVRGLGRGVKWAAIRRLINKENIQMICLQETKKDSIDRTLCQAIWGSDEVKWEMQPAINSAGGILCMWTESVFK
LQNKVTGNGFILLEGVCNREALKICIVTVYSPCDIHNKRILWDSVRQLKQASQVRLWCVLGDFNCIRNPNERIGKSDRLV
GDNSMQEFNEWIEDMELLEVPNVGRQYTWFRPNGESKSRLDRALISPEWRDTWPESVQFTLPRNFSDHCPILIKANNVDW
GPKPFRILNCWLTDKSFRDVVNHCWNSVQVSGWGAYVLKEKIKRLKGRLKIWNKEEYGDSFKKVQQLEVELNKLEEDTLH
RQMTDLEISRRKKLQEDLWVAAQAHETLLRQKSRSRWLKEGDCNTRFFHIRVNANRNRNSIKGLLIEGVWTDEPNKVKEE
IRTFFSNRFQEADFQRPKIDGISFKSIDQQQNSMLVAPFQETEIQNAVWECGNDKSPGPDGINFRFIKQFWDTLKHDIFR
YIHEFHANGAIPRGCNASFIALIPKISNPQHLGEYRPISLIGCMYKIVAKLLANRIRRVMPAIIEETQFAFIEGRHLLQS
VLSPMRxxMKQKEPQALPYFKIDFEKAYDSVSWEFLLYMLRRFGFNSRWIKWIEGSLKSMSMSVLVNGSPTNEFSPQKGI
RQGDPLAPFLFNVVVEALSGLLRKAIAENMYKGYPVGSNKVDISILQYADDTIFFGEASMENVRAVKATLRAFELISGLK
INYAKSCFGAFGVQISGGVMRxYLNCSLLLSFYYLGIPIGANPRRTQMWNNIIHKYERKLAKWKQRYVSWGGRVTLISAA
LTSIPIYFLSFFRIPKTVEERLKRIQRRFLWGGGLEQKRIAWIKWDQVCMPKEKGGLGIKDIDTFNLALLGKWKWNYMQE
KGEIWSRVLESKYGGWRSLYGRRKGGHQSMWWKDLKQTVNSAQHGDIVHSNMRWKIVGGDKVRLWEDKWNQQQQPLAERY
PRLYQISTQQNQTIRQMGQHMQSGWEWQFLWRRSLFENEIESAVNFLKDIEGIHIQQQGSDEWEWLGDQTRNYSTRSAYN
LILEASKGGQQQDWCKELWRIKIPSKISVFAWRLIEDRLPTRMNLHRRQVQLQDLRCPFCREAVEEASHLFFHCVFIQPI
WWESMSWLNLQTAFPLGPKQNFLQHISIQAEGLRSKRWRYWWMAVTWAIWKTRNRVLFSNAEFDANRLFDEAVFWTWTWL
RHFEKHFSTHLNQWASNISQGFIM
>L1-3_Cis_gag#LINE/L1  692-2095 [Ciona savignyi]
MMSSDYIPEIEGTLDRSVVFQLTGTVEHMSVSSFMELFAEGAPLAGISEIVESVILENFKDATFLVTLKNPSETQIVPKR
QHIIDYFXNNQITFTTESGANMAIKADFPQGESEIVSLHPFPLDIDIKKLEDLIEKEQWGKLKHINYGTHRNFNKIKNGW
LNVTLTETKVKNIPPLLKIAGRLITVTRPGEAHLPLCRYCKIRGHHQQSCPKKGFCTTCKTHGHLTRNCRNGTTYETRPR
TVFYSETSTAPLLSTPSRNDKNVIINEWQTVQRVGKQHLIPTRHAPIRLTNHFGLLDADDMLQKALFGETSNDIVQDLFK
PDDFPELIENHTSPTLSAPKSQRSPRRKKQKKGKTSPEPTKPDQQHQNPAHEEPNEQSKPETMETTNLSSSTNTSDLLLE
EITDKTDQQFKSLLNRKPSQTESVYVTPDDNKTPTHPTAQNNDFNTELYNLRTNWNINSPKRPRPSDS
>L1-4_CPa_gag#LINE/L1 20-1318  [Carica papaya]
MVWNKRGRNLVLSEENEKSVKRIFFPDGFEAGGWWKIMKAIFELTETPLQNPFTTPTNTKKPPSCFQQPPVDASQISLCC
PTCKSSFSVLFAMVDKKSYAELLKTTTLCPSRAKEKVPDPYMKNPIFEIQIINHSGGNASKTIPAQTIVQKPKYSSTPDR
KANNPRPKYTWAEKGKWHNQAGPSRVPNKKSSPIKKALKVNWVWRKKKKPTNSNLNTCPNLLEESLQCPSRENEEENAAT
QNPKQTPSRDSSEFQKGIGRPECDLASTMFLSNRWQDEMSSIPNPGMNLDEVSQSGLMIHAQEPNMGMEMVIHAQEQAPI
GENILQNDKIRHIEKITASLHKLLNDNKRYXPILFSEWIAQNILCISEELGTFFFGYELETQNLFFDLQKKIEGRNSEPL
LLQSGKKKQNENVPRELKRLHSSINYDGTQQED
>L1-3_STu_pol#LINE/L1 2148-5780  [Solanum tuberosum]
MMKFKLISWNVRGLNDREKRRVVHSLLSGWRADIVCLQETKIEGDISEMVKQIWGGRWIRYACLEASGTRGGILLMWDAR
AWMGEVLEIGSYTITCKFESQTQNFSCHISGVYAPNCYKERRLVWEELSSVRGLMEGPWAMCGDFNVSRYISEKKNCNRR
TKGMREFSDFIEDMELVDMQLEDAAYTWFKGDQQEAASRIDRIMISKEWDDTFNNLKQIPLQRLGSDHIPIALITGCWER
NKSYFKFENWWLQSEGFVDRVREWWSSFSYTGRPDYVLACKLKALKLKLKEWKQEEGGNLGSQRRRLLEQLAELDTERVN
RTLTVEETTKKAAILLEYEELVKKEEVSWRQKSRVLWLKEGDKNTKFFHKMANAHRRYNNIDQLMIQGEVTQEKSRIEGE
IIAYYKNLYRETHQWRLSYNNVECPMLTEEEKMSLQGRFEENEVLNCLKLCAADKAPGPDGYTMGFFIKCWDVLKKDIMD
TFQNFYEQEVFEKSFNATFIALIPKKKGANELRDYRPISLIGSIYKILSKVLTERLKVVIDKLVDSQQMAFIKGRQIMDA
VLIANEAVDSRNKQKKPGILCKLDIEKAYDHVNWKYLLKILEMMGFGQKWLNWISFCISTVSFSVLINGSPAGFFQTQRG
LRQGDPLSPFLFLITMEGLNNMLKTANMRGWIKGFDVARENTESLEVTHLQYADDTLIFCGAEEDQLKYLRVILVLFEGV
SGLHINWIKSSMYTINEVNNIELLASILGGEVGTLPTTYLGMPLGAKSKSLEIWNGVIEKCEKKLARWKTQYLSRGGRLT
LINSVLDALPTYMLSLFPIPPGITKRLDSIRRKFLWQGNKENRGFHLVKWNAVTTGKKNGGLGIKNMELHGKALLMKWLC
KYSNENQTLWRRVIGAKYENQDSWMTKIVTTPYGISLWRSIRALWEEVKPKFKMKVGNGNKIKFWKDEWHEKGNLETLFP
DIYNLAMFQQRTIAELWTPQGWNFIFRREPNDWEVMRLAEFLKLVGHFTGLQAYEDMLWWKGNNRGEFKVHSAYRLMDES
SQQSPIWPWKQVWKCRIPHKVSCFIWLLAKEAALTQDNVMKRGITLCSRCFLCGETLETVNHLFLHCKYTRQLWRIFLSL
KGISWTMPRRVTEALYSWEEAGALAKDRTRWRIIPASIWWAIWKERNSRCFEGIENSVQDVKLNCILLLCFWCNQLYSND
TVSIVDVLDSI
>Jockey-6_DPer_gag#LINE/Jockey 903-3443  [Drosophila persimilis]
MEEKMGDQRPKCIKEEKEEKEERKMETSHQTDKTTIAQLDLTGACITLSSSSSSELDGCSPQRTGLRQARGDPSPLHEMS
VDPSCSWESLNEDGTFPEKVPDRRACHLPAVDVQGNGSKIKLQKTLQNGARYHLSLSTRQRHGQQHVAARELTDPLLINV
ADTDYRHVAVNVADDVADDVAADDQIHAATNKTIDNSYLYIDKNKNNSKPKTNNSKNKNKSPKTNIKAKKSLLESLTPAS
RTSMTITQSPPLTELENSNDIINNWLSDIPATTLPNMAVFSAPNYTPGKRQNREMDTTDEDQSFHELPKQDLDFNTPKFK
SDTAKRFASEFNKIKIHNPTKTNQPLTQPSNTKDLDTGEFQDSSGPNNLQRQPLPPISMHSEMLTANNTDQIEQPDLFPW
QEVPRSKRVPSIYISGVKTIVPLLEKLNYTAGIGRFTTKSTPGNGIRIQCADMDAHKKITTLLNDQKVPMHTHQQIGQRG
VRYILRHLHYSTTREWISSELKKRHYIVRYTSNMKHRSTGQPINMFEIEIEHKQDGSHDEILKISELGGQAVAFERKWVT
RDPLQCHRCQAYGHTRNYCKNAPKCMKCASDHLSTTCTKPRYTPAKCVNCGGEHVSCFKGCPAFKAARSKLKIDKIVNMD
RSIGKALGRPSVWEEISRHPQPNRGGPTTAGDHRKDEGDYVEGRKIPGRGFTNPFSGRTVQPKPSLHSTEIKKRLSKMRN
RERSKQTSSHKKDRIGKGRAPKTGDTNVNPAASHLEKFQSRLREEQMALSQSAKXMTEGPAEQENKRFEDRLNVIELSIK
DIMASISQIHTLLQNPPPKNTDNINNTTNNSEHHKTTNILNQIENKQ
>Jockey-5_CQ_pol#LINE/Jockey 1525-4191  [Culex quinquefasciatus]
SNAVDILRVANWNGRSVHGKKLEFFDFLERHDVDVGIVTETWLHEEQAFYHPKFRCVRFDRDSADAERGGGVLIAVRKGL
THTELDFSTKVIETVGISVSTADGNVHIIAAYFPGARRRSAWTQFRRDISTITRGAEPFFVVGDFNARHRSWNCARANXA
GTVXFQEAASRNFFVHFPDAFTFHPXGRGRPSTLDLALSNNLLDMTKPVALNELSSDHRPVLFDVSLSAPIEQSSPKFRC
YARADWPRFQREINAKLDLLNPEVTDLNTEADVDAAVEFLTKTLLEPKLFQFQKFNSVATXLXQSRGHPQADRAPQHAKA
SMVQETGPDLPGHRVVTKPXNSEECNQANFNKFKDTLRTLHDDRDTLWRITKALRKTTKYSPPLRXGTNIIASSSEKAXL
LAASFAXAHTNQMPDDPVTVAEVNNSIDXIDRTPLADNHSWLVRPKEVAQLIRRLKAKKTPGQDQLRNIVLKRLPRKAHI
FIAKIFSACVRLGYFPAAWKHAVVIGIPKPNKDATNPSNYRPISLLPTLSKLLERVILVRIDQHLENTRVIPDAQFGFKR
GHSTNHQLVRLVKEVRANFARRKSAGMVLLDVEKAYDSVWQEAILHKMYLANFPLYILKIVRSFLQNRSYHVAVNGHVSD
RHEVLFGVPQGAVLSPTLYNIFTADLAMINGVSYFLFADDTGFLASDSDPAIVVTKLQAAQNAIERYQKKWKMKTNAEKS
QAIFFTRKRSPRYLPRREVSVWGSHVPWSEDVNYLGAALDKKLTLAKHIKNATTKCGKITRMLYPLVKRRSYLDRNSKLL
LYKTVLKPAMTYAYPAWHDCAASHRKKLQVKQNRLLKMVLNLDPFHPTDDVHRMAKMELIDDWLLRVLPKFWMGCATSAN
PLLQRMSP
>Jockey-6_DYa_pol#LINE/Jockey 1746-4415  [Drosophila yakuba]
MASLRISTWNANGVSQHKLELAQFLLEKHIDVMLLSETHLTNKYNFNIRGYIFYGTNHPDGKAHGGTGILIRSRLKHHCH
IETAKNYLQATSLKIHLDNGNQLTLAAVYCPPRSTLSEDQFMEFFNSLGEHFIAAGDYNAKHTHWGSRLVNPKGKQLYNA
IIKANNKLDHVSPGTPTYWPTDPKKLPDLIDFAVTKNIPRNLISAECLSDLSSDHSPLLINLLRHPEPANLSYKLTSEKT
NWLKYKKYISSHIELNPPLEAEADIDSFVNSLESIIVAAARCSTPQTVSKITNHKKTNLQIEQLVLEKRRLRREWQSSRS
PSAKQKLKDATRKLTKALKQEEELAQRTYIEKLSTSSTKNSLWKAHPTLGSPTVPVVPIRNHTGGWARSDKNRASTFATH
LQKVFQPNSATNTFEIPPATDDSQXHHAPVVFRSNEISKIIKEHLNPKKSAGCDLITPKMIIELPYCAVCSITQLFNAIN
KLGYFPGRWKXSTIIMIPKPGKDHTVPSSYRPISLLSCLSKLFEKCLLSLTITPFLNTHNTIPAHQFGFREKHGTIEQVN
RITSEIRNAFEKREYCSAIFLDVSQAFDRVWLDGLMYKIKTTLPNNTHKLLESYLYNRKFVVRCNTAISDEHSIEAGVPQ
GSVLGPTLYVLXTADIPTSSNLTVSTFADDTAILSRSRCPIKASSQLAIYLVDVEKWLSDWRIKVNEQKCKQVTFTLNRQ
DCPPLTLNNVALPTANEVTYLGVHLDRRLTWRRHIEAKRTHLKLKANSLHWLINSRSPLSLDFKVLLYNSVLKPIWTYGC
QLWGNASNSNIDIVQRAQTKILRTITGAPWYVRNASIHKDLNVPPVKDEIAEKKEKYLNKLSTHPNQLARSLTRLSSRSR
LRRNDLPTQQ
>Jockey-7_DF_pol#LINE/Jockey 1982-4645  [Drosophila ficusphila]
MAPLRIALWNANGVSRHKLELAQFMNDNEIDVMLLAETHLTNKYNFQIRGYMFYNTNHPDGKAHGGTGVLIKNRIKHHFH
NTFATNYLQATSINIQLGCHNLALAAVYCPPRFMISEAQFTDYFNSLGKYFIAAGDYNAKHTHWGSRLVTPKGRQLYYAI
INPSNKLDCVSPGSPTHWPSDPRKLPDLIDFAVTKNIPRNLISASSLSDLSSDHSPVLFSLNQQPVSNDNPVMLTSRSTD
WLKFKKYVSSHIELTPQLTGEDDINRTVCMLESVLASAARIATPPRQNTTHNIKNTNAEIEQLVLAKRRSRRVWQSLRSP
SAKQQLKEASRRLTKALRQEEDRSQHRYIEQLSPFSSKFPLWKAHSTLSPPTVTVTPIRTPAGCWARSDKDRADTFAAHL
ENVFQPNPVTNVRNIRSQTEDDLPIAEPIVFRPCEVIKIIKEQLQPRKSPGCDLITPKMLIELPLCAVGTICQLFNAMTR
LGCFPKRWKKSIIIMIPKPGKDHTLASSYRPISLLSCLSKLFEKCLLTRIIPYFRRHNIIPAHQFGFREKHGTIEQVNRI
TSEIRSAFENREYCTAVFLDVSQAFDRVWLDGLMHKIKIMLPNSTHKLLKSYLYNRIFVVRCNTSISAERNIEAGVPQGS
VLGPTLYLLYTSDIPTSSQLTMSTFADDTAILSRSRCPQQASAQLAAHLEVVEKWLSDWRIKVNEQKCKQVTFTLNRRNC
PNLTLNNIVLPQSDDVTYLGVHLDRRLTWRTHIEAKRTHLRLKANSLHWLINSRSPLSLDYKVLIYNTVLKPIWTYGSQL
WGSASNSNVEIVQRAQAKILRIITGAPWYVRSVNIQRDLNVLPVRDVIAQHMQNYYTKLSTHPNHLARALTLVCSRSRLR
RNDLPIQR
>Jockey-7_DEl_pol#LINE/Jockey 679-3992 via tfasty with Jockey-3_DYa_pol, 1 frameshift. [Drosophila elegans]
MTHTTNNINNNTNTLKLCFWNACGAGNKTNEIEAFIVKEKIQIMMVIETKLHPNSKALNFPGFHTYHARNPNSNRKGGTA
IIVNKNIRHMALSPIETEFIQSSPIVLIPSSGIRADMVIIAPVYCPPTYKWSPSHFTQMFNYFKEALGGKSKFILSGDWN
AKHSNWGNYRSCERGRHLHDSLQNSRSLQTLATGEATHYPFDSRKQPSALDFAIYKGFRRQNLKITASQDLSSDHVPLQL
TINFNKTNIMQEKTKTTIITKQTNIPKFKKLLEDKILLNTDIKSGQDIEDCIDILMRNINNSAKEATPQTHTQNRNNNRH
KENPNLIKLDEKTLNLLNQKRELNKIYRATGTKEAKTWFKAAQNKLAKEIKKLREKNINDKIKDIDPTDRYKMEKLWKMT
NIIKKQEQPCWPLKKEIDPSKPTPASLWTRTADEKAEVLALHLESRFTPNLRNEITDREQIKKELMNHKTLNAAMTRAQN
YSNLRPVTLAELNTLIDALETKKAPGHDKVDNKLIKTLPIKARLYLVLIYNRILQTGHFPSQWKHATITMILKPKKSPSC
ASSYRPISLLPCFSKILEKILMVRLFETESFAKAIPHHQFGFRKEHSAEHQLSRVTQFILKAFEEKEVCSATFVDVSEAF
DRVWHDGLLVKLAKLLPTCMFNVLENYLLNRTFSVKLGNGTTSKTCKITAGVPQGGNLAPILFSVFTSDMPLPIPINPSY
ERSFPNYFPKNMLLATYADDTVILSSASTANTATELSNTYLSKYCSWAKHWDISINAKKTGHILFSLRGKENPYTTPLVD
GQRTKKQNKQCYLGVILDRKLTLKPHILQLRAKIFSSYKKLEWLLGKKSKLPDNTKTLLFKQIISPIWHYSIAVWGSLIS
ETSAKQIQTVENKLIRKSIGASRYTKQSTIREIHNINSFSEVFAHSSQRFAISTVNHRNPLIRDLILKPYIPERLAASRS
RYLDQYQKHLLPAKANIPEPQIETIYNSTYGYTEGEEKQILKKLREKFRKSLPTLLRLTDEREELEENEKEIKKKNEKKR
ALKDKPPERWCELLINKYNKLFREGRITREELLDKMEGQPHGIIRIIIPDFQTHIGQQTLYYSTN
>Jockey-4B_DVi_gag#LINE/Jockey 666-1979  [Drosophila virilis]
MPAFHEPLVXWQRKRRXATLLAEAVKKGKPLKNRNTSRTGTKPVTPNTASXXSNRFALLEPQDDVSXIDXDXTDTADEXX
PAPXXQQAAKKISKPXPIXVPGVSXIVAVEQTIDQSVGPDSYEFKVSPSGYLRIYAKDADTHRAIVRKLTEVRVQFTHFC
LKEDRPYRVVVKNLAASTPRSXIEAAFTSHGHTVTNLCNPGARQPTSEASADFTNDSPSRNFWFVDLKQDVNNREALRLN
RVGRQRVTIELPRKSNSIRQCFRCFEFDHTKNYCLKQPMCGRCGQPHWTNSEQCQAKTVADLRCSNCNGNHAAYNKRCKA
FQQRLNARHRINVAPRHDTTNSNLHGASTRSSYPPELCNKACRMLMRCGQDATLTSKMLKRANPLCAISPPLQQRSPNTS
SMDLRGKTRPSEVSFKDSSSRSQHLMQQSQVSWSASRS
>Jockey-1_DK_pol#LINE/Jockey 2184-4907  [Drosophila kikkawai]
MSQIGLKIGVWNADGLANKALELELFVHKHHIDIMLVSETHFCSRSYYKLHGYDVHLSNHPADRHRGGSAVIIKSCLKHY
QFLTMEHQSAQCVAVKVNTDQGEIAIASIYCPPNFQRSYDDIRTLFEELGPKFLIAGDWNAHHRLWGCRNSSVSGRVLAN
YILSSHIQVLATGGPTHYPYSQRTPTAIDFAIYGGIRSELLSISGSLELCSDHIPLLIELRSAAFKVSQKTHILPRNANI
PRFQAAINQLVNLNMVLRSPEDIDDATEVFVRNIHIAAESSTXGQGSINPSDPPHALLKPEVLDLVRSKRALRRRFMRSQ
NPADKRAYRRAENDLKKLLHKTKNDYFSDLLRNADPTKPYGFNLWKAAKSVKRQPPRRIPIKRADNTWCRSDADISLAFA
DELEGRFQPFDLARSEDVEATLAFLNTSCPDVEPIRHVSPEEVCLQIKKLHVSKAPGFDGIDNRVAKALPKKGILFLVLL
FNSMLRIYHFPTQWKCAVISMIPKPGKPENLVASYRPISLLPTFSKIFERIFLSRMMAVRSVQDAIPDHQFGFRNHHGTP
EQAHXVTQHILDAFENGQYSSAIFLDVKEAFDRVWHNGLLFKLKTLLPTAQYLLLKSYLLERKFMVDVRGERSSIRSSRA
GVPQGSVLGPVLYTLYTSDLPNPREPGTLLATYADDTAFIANSACRIEASRKTQSFLDTYSEWTKRWNISINGNKSQHCN
FSLRHKILPRVKFQDTLIPQSPQAQYLGLILDKRLTWRQHTTKIAAACRGKLRKLNWMLKSTSKLSLSNKVLLYKAIVVP
AMTYCIQIWGTASDSNVMKVQRVQNRALRTITNAPWFARNADIANDLKMLPVREQINRHSSRYNERLLAHTNHLAASLAI
PMSRRRLKRRHPGDLWLRGRQRTRVLHQ
>Jockey-1_DEu_pol#LINE/Jockey 1935-4583  [Drosophila eugracilis]
MANLRITMWNANGVSRHNHEVTQFLNDNHIDIMLLAETHLTNKYNFQVRGYTLYRTDHPDGKAHGGAGILIRERIRHHFH
RSFATNYXQATSIQVQSGNGHLTIAAVYCPPRFTISEGQFMDFYNLLGDRFIAAGDYNAKHTHWGSRLVTPKGRQLYNAI
IKPNNKLDYVSPGSPTYWPTDPRKVPDLIDFAVTKNIPRNLISARALSDLSSDHSPVQITLLQCTKITDDPHRLTSHRTN
WLKYKKYVSSHIKLNPQFNLAADIDGSTDALEEVFVKAATIATPQCREMETNHLKTNLQIERLVLEKRSLRRAWQTNRSP
SSKQRLIKATRLLNRALKQEAEKAQLRYIKKLSPTSTKHPLWRAHPNLSSPVETVTPIRNSSGSWVRSDADRAETFALHL
RNVFQPNPATGSFVLPQIESESISLPPLFQPKEIAKVIGELKQKKAPGGDQITPKMITELPNSAVEVICKLFNGIMTLGY
YPKKWKKSIVIMIPKPGKDRTISSSYRPISLLSCLSKLFEKCLLTRIIPYLEAHNVIPAHQFGFRQNHGTIEQVNRITSE
IRTAFQHREYCSAIFLDVCQAFDRVWLDGLMHKIKTHLPGYTHKLLESYLYNRTFAVRCNTATSGDYIIKAGVPQGSAIG
PTLFLLYTSDIPTNEQLTTSTFADDTAILSRSGCPGRATTQLANHLLVVERWLSDWRIKINEQKCKHITFTLNRQTCPPL
SLNNTQIPQVNDVTYLGVHLDRRLTWRRHIQCKKEHLKLKANSLHWILNARSPLRLEYKVLLYNSTLKPIWTYGSQLWGN
ASRTNIDIIQRVQSKTLRIITGAPWYIRNLNIHRDLGILTVKDEIDKQKASYNEKLSMHPNXLARSLVPSRSRLQSNDLH
SQQ
>Jockey-1_DYa_gag#LINE/Jockey 396-1988  [Drosophila yakuba]
MSSDQKNERRSSVNPRNACYSYFSTRDIDQNQKSTKSNSTLLTVDSKRASSCSPSLLTPTPASWSYQCQTPSPPASLNEA
PTTSSAKISAVNSPPIIKPTTNTASSVPTAAQQNKMATKTVSLDKQQAVPAIQTGMDRYIQIKRKLSPPNTVGNKPKINR
TNKSTDQTRSSNENRFSILAEADNNQPELGQETQRKPKPPPIYIREKSSSALVNKIVALVGDENFHVVPLIKGNIHETKV
QTKSEEHFRAVSKYLEDTKKNFYTYQLKSSKGLQVVLKGIEPDVTPSEIQEALKARGFCAKNVSNIVNRNKKPQPLFKVE
LEPDSKALKKNEVHPIYKLQLLLHRRITVEEPHKRNGPVQCTNCQEYGHTKTYCTLRTVCVVCGDFHNSVNCPANKEDPQ
MKKCGNCGGNHTANYRGCAVYKELKSRMRRATATHQQHFAKAARSSFGQLDTTKGISYAEALRTGMENPPQPHSENAQQV
PVQPQSKLESMMFTMQQSMMELMSFMKTTMQTLVQNQNMVIQLLVAQQSK
>Jockey-2_DT_gag#LINE/Jockey 222-1994  [Drosophila takahashii]
MSAADQDINVPLCDHVMNVDSCDGSSSPNLFITDNSNASTSKEFSRSSRGRGVRVTSVRSKEARSQKFDLERNLSIADTS
YSSLDNLKDVLEASADTLLNTEKDFASQHEFDNFNEGIHGASTPGHSTTSNLQFVSQEVADQLRCESVKRIRKRNELDPN
HSKDASFGPIIKRFRNLKRKVHLEIFGSEDSDSPGEKYSGHGNDFALLSDEDIENPLPNDRIDTQSPPSEPLNSCQPPVT
SKSTITSSNSGGISQKSKGISGTPIPSSKAPKSEPRPPAFVIKGVTDVKQLMNLIKAATTNIRFKITGPATVRVSPFDGD
TYKLVQQLLWSNNIPFNSWQLKSDRSFRIVVKGLHSSTDPEDIKADLGAAGHVVRNVYNPPGKNNGHRPNIFFVELESST
NNVKVYDIKSLAYQSITIVPPERRDEVVRCYXCQDFGHTKTYCFVPPKCAKCGGDHESRSPVCPATSQDQFKCINCGSNH
SAGYRKCPAFLEAIARRKSGTIKKQPXXKFVPAPLPAQSAWGPALPSPSTGSSTSKPMQRVTEPPPPSAGFEILISRIDQ
MMSMMXKMMELLMNQFTGSSPSDASKIRRHV
>Jockey-2_DK_gag#LINE/Jockey 637-1857  [Drosophila kikkawai]
MDRYIQIKRKLSPHNTVGNKPKINRVTKSYDPNNTNKFSPLAAGENNEAELEQETQKQPKPPPIYIREKSSNALVNKIVA
VVGDGNFHVVPIIKGNICETKVQTKTEEHFRAVSNYLQEAKKSFYTYQLKSSKGLQVVLKGIEPDVAPSEILEALKGKGF
FAKNVSNIINKNKKPQPLFKVELEPDSKALKKNEVHPIYKLQFLLHRRITVEEPHKRNGPVQCTNCQEYGHTRTYCTLRS
VCVVCGDFHNSAHCPANKEDPNTKKCGNCGGNHTANYRGCVVYKELKSRMRRATATRQQNTQNVYFNSKTTPDVFFAKAA
RSSFGPLNAPTGISYAEALRTGMQNPLPSNSVNAQQAPGQPQNNLESMMVTMQQSMMELMSFMKTTMQTLVQNQNMVIQL
LVAQQSK
>Jockey-8_DAn_pol#LINE/Jockey 1761-4367  [Drosophila ananassae]
MQTLRISMWNANGVSRHKLELSRFLIDNHIDVMLLVETHLTSKYNFQIKGYTIYRTDHPDGKAHGGTGVLIRERLKHHFH
KRFETNFLQATSIQIQSRNGSLSIAAVYCPPRFSISEGQFMDFYNSLGDRFIAAGDYNAKHTHWGSRLVTPRGRQLYNAI
INVRNKLDYVSPGSPTYWPTDPRKLPDLIDFAVTKNIPCNLISAKAVSDLSSDHSPVLLTLLQSPEITEHPLSLTSPKTN
WLKYKKYVSAHIELAPEFNMESDIDYTTSALEEVLVAAAKISTPQGKEVDRNKYHKSNQQIEQLVREKRRTRRDWQNSRS
PASKQRLKEATRSLDQALHQQEENAQLRYIQNLSPTSTKYPLWRAHPNLSAPIETTTPIRNSSGCWARSDEDRAETFATH
LESVFQPNPASNSFLLPVIQPEATPQSTAPSFRPNEIEKVIRGLKPKKAPGGDLLTPKMLIELPKCAIEVVCKLFNGIIN
LGYFPKKWKKSIIIMIPKPGKDHTTPSSYRPISLLSCLSKLFEKCLLTRITPHLEACKIIPAHQFGFRRNHGTIEQVNRL
TSEIRSAFEQREYCSAIFLDVSQAFDRVWLNGLMHKIKTYLPTYTHKLLESYLYNRVFSVRCNAATSGDYIIEAGVPQGS
ALGPCLYVLYTADIPTNAQLTTSTFADDTAILSRSRCPTQATNQLANHLIVVERWLSDWRIKINEQKCKHVTFTLNRQTC
PPLSLNGMQIPQANEVTYLGVHLDRRAHRMQEGAPKTESQQPPLDHKLTIATVPXLQATTLQFSPKANLDVWLPAVGERE
QQQHRHHTARTIKNLENYHWGTLVCSQRKHPPGSGHPRSERRNSEAKRVLQRKTVFAPKSPRSGIDSGF
>Outcast-1_DWi_pol#LINE/Jockey 1677-5252  [Drosophila willistoni]
MKILQYNIQSLTHNNNKHLLEIFLINNDIDIAIISEIWVTNNANCSLANYNFICNPRADGYGGVGIYLKKYIKFTQLNCI
SEVEVISVSTMNLKHNINLFSVYAAQSLSDDLFEKGCKEILTRANQTNGLTIIGGDLNAKSQIWGNTIQNNRGNILEQLL
INNNFYCLNNGSPTYSHNASYFSTLDITLINNYNLNPKWTVTNAKISNSNHLPVILELDETYEVQNQKRINHKKILQAFS
KIHISSLDNLTSTSQNITRQNTISIDPKNRYKPKKYWDEHCDRLFRLRNACRQKYYKTKLHTDALIYLKSNRTLNNYLHK
VRKNNIDKLMDEISKTNSAKEMWQKITALKQYKKLKPTKNEKTDEDHEKFLKQMATVPDTSDCIRMKPPNTWLLPASNSN
FTDNDLLDFLNSRNPDSAKGPDNISYRMLLALPPSEIQILVSLLNETLDNGDIPASWRKIKVVPVPKKNLDSAIITNNRP
ICLLSVVFKCLEGLVKTRMENHINNNNILPPRSYGFRKHHSTSNCINDVLNNIANLKARGMHVCASVLDLSKAFDSVNIP
ILGNKLIDLGFDHRHIQFIYNYLKERVLTMGRTEIKIRKGVSQGSCLSPILFNLYTAELHKISNQINSILFQYADDFFLV
CYHKNFSDAKNILERQVTEFSKMCNKINLSFNPNKSAALHFNLRRKPLQIICNNVAIRDVDKINYLGRLISTNNSMTQHI
KETIAKSNKTNMFLHMINGCRFGTHPKNAILFYKAFTRNRYEYASSSFANTTKTVMGIINTHANLHLRKALGLIRSTPTY
IIYHLAAELPPEYRIKFTTAKELIRVFAYGLPAASLLSSVFHANKTSYAKVYAEFKDVLDNITPIEPTPIRTRKIFIDAN
FSKGAFKNIRXANETMILSLYKEKIKNLNSKNFDLIYTDGSVSEDFTGSAFFHLGSNITKSYYSNKKLSSLTAELTALEK
AVEFADSNHLFKVAFLTDSLGAIQTIRNPKNNNCIAQRILKNIENSYNIISVEIHHIPSHSNIKENDLADTAAKNARHDG
VFTHISWTINDAIIHIYNKIKLEWERAYNEFCIDRNKGYCLLYPYVSSQPWFQGKNQFHRLEIKQLNRILSGHAFDKNTL
FKMKVVDNNLCDTCNITEDISHIILNCSKYTNTRMNFPTLTKYNDIYQLLAQEPIANYKSITQFTKAANIEL
>Outcast-1_DT_pol#LINE/Jockey 1768-5307  [Drosophila takahashii]
MPIKIYQHNVQSLSYNKNDIEFVLNNNNYDIAVLSEVFSHNVLNNRRKIALFNIIEKHRDDNYGGVAIAFRKCIKFKSIT
YRTDNDVIVATTLNLNPNITIISVYFEPSLSMDDFKCEILNILDFSDNLNNVFIIGDFNARNTVLGDYTNNARGKFLIES
MNNAGFVCLNSGSPTYRRHIDSAQGSVLDLAFTNAGLSTSWECKPLFVGGSHHHPVNIEVLDTAMKSSTFIAKNRLLNSL
GKTVLNGDITNIASTIKGKIKKSTYIIKKNRIPKLWWNNDLKILFERYKATQTLANRHPSMDNYILAVNVKAVWKKAVKA
AKSLSYMEKLEEINEQPSNQSAWNFLKALKNLDSGNYCKLNMSDQENYLQYLEQQIPTDVSNSMFHDQIVDAELFQEFNL
VDLNLVLSKKKKSAGGHDGVTFEMLNNLDSNCKSHMLKLFNQLIRDNRIPEEWRIIKIIPIPKKDKDLTDYKNFRPISLI
SVFAKTINKMIKERLCEFIESEYILPARCFSYRKNRSAAMCLNDILNSCELYKSRKKSVAMVILDLENAYNCVNLNFLKR
IMVSENIPPIFINWIHNFFKIRILTLGKYTKTVTGGIPQGSCLSPVLFNLYTKRLHQIQDRNTEVFQFADDFIILSSKRF
FQDMEDNLQSKINDFELLCSDINMSFNSGKTVSLVMCNGNSRTLNIQATSGVIRQVRNTKLLGRIISSNGSQIEQVKKIK
GDNNNAMQILNLATTIKSGLRPKVATNIFKTFIRSKNEYALTSYGNLTKSSSKQLFITQAKSLRRCVGVNPFTPKFMVFA
LAGVIPPCYRAKILTAKELIKLKTIDVNRFNTIINSNIKTSYKVVYDSLKLIIDRIQIADHYTYFKNIVIQLNFSSNNKK
DIAKEEAKGRYSELISYFRQNDYNIISTDASVTSSCTGLGIAAICDRSNEMYKIENRMSSVQAELLAIKQGCILAIKSNW
RKVAILTDSKGALMVLRNKNCDNNTVSDIHNLLSISCISSCYLQWIPGHMSLDLNEKADFLAKQAVYDGTDIDYKLSIGE
AKRLLNQEIWKEWGSEYERLAREDGGIFAKTYPTLSIIPWHIRLKWNAKDIKLINRLMTESTYDNCFLFRIKAIDSNLCT
LCNLIDDANHQIFNCQRHILIRRKYKIFNRFFNISDLILSKEQLFYREVAKFINEAQINL
>Vingi-1_Acar_pol#LINE/Jockey 110-3058  [Anolis carolinensis]
MDEYQRSLSRPLLTIMSINIEGLSLAKEELLAKMSEDISCDILCIQETHRDITMRRPKILGMQLAVERPHRQYGSAIFVR
SGVAISATSLTEVNNIEILSVELDSCTVSSLYKPPGADFYFTPPTSCHNHEAHFVVGDFNSHSCVWGYDEDDRNGEAVLT
WADNSRMSLLHDSKLPPSFNSGRWKRGYNPDLIFVKESISHQCTKRVLNPIPNTQHRPICCVAYAAVRPKSVPFRRRYNF
NKANWTKFTETLEAAISDIEPSIENYDLFVEAVKRSSRLSIPRGCRTSYLPGLNEESLNQLQEYLRLFQENPYSDGTIAA
GQKLSTALANAKKDRWIELLENLDMSKSSRKAWQLLRRLDSDPLVNPGHANVTPDQIAHQLIQNGKTNCSRIKMKINRVP
ELETHQLSSPLNLKELREAIKRCKTGKAPGLDDLMMEQIKHLGAKAENWLLKFYNQCLAHKQIPRAWRKTKIIAILKPGK
DASNARNYRPISLLCHLYKVYERMLLNRLGPVIEPKLIAQQAGFRPGKNCTGQILHLTEHIEEGYEKGCITGTVFVDLTA
AYDTVQHRKMLHKVYHITRDFDFTKTVQTLLENRSFYVEFQGQKSRWRRQKNGLPQGSVLAPTLFNIFTNDQPQPPLTKS
FIYADDLGLTTQAKDFETVEKQLTNALKDLSSYYKENHLKPNPAKTQVCAFHLRNREANRKLKVTWEGQELEHCFHPKYL
GVTLDRTLTYRKHCMNTKHKVAARNNILRKLTGSAWGADPQVIRTSALALSFSTAEYACPVWHKSAHAKQVDIALNETCR
IITGCLKPTPVDKLYKLAGIAPPDVRREVAANGERKKVEHCESHPLHGYHPPPTRLKSRKGFMRTTTPLDVPPAAARVSL
WAAKPGNSNWMAPQEGLPPGANQEWATWKSLNRLRSGVGRSKDNLARWHYLEESSTLCDCGAEQTTQHMYACPQCPASCT
EEELFKATDNAVAVARFWSKTI
>Vingi-6_AMi_pol#LINE/Jockey 3-2694 via tfasty with Vingi-1_PMa_pol, 3 frameshifts and 4 stopcodons. [Crocodylidae]
TIVTIPSTEHRGTATTAVKIGELTVINIYKPPNEEWPNPALPSPQHPTIYVGDFNSHHTEWGYDVNDNNGEALIDWMSAQ
DVHLVYDAKHRATFRSARxGREYNPDLTLVSSDSEGVPIRLSQTVLSDFPHSQHRPITSHVGVEIPVMPSKxVPGADWSG
FTADVEKTIHCIPLTPKQYNRFVALLIAAAKKNIPxGFRERYIPCWSRDCEALFQQYQQSGDPATATALLESLDTCRQQS
WLDCVESIDFTHSSHRAWSLLRKLGASNPAEAANPRVSANAVAAKLVANSKGSLDKQHKQEVKKKLRETMANCPESSRLS
DHFTLAELDAGLASTKKGKAAGKDGIPPEFLHHLGPLAKQWLLALFSTVMENGHIPQIWREAMVIALPKPGKPVHDPGSY
RPISLLCTTYKLLERLILLRISPIINLLLPQEQAGFRPHRSCCEQVLAITTNIEAGFHHKLKTGAAFIDLSSAYDTVWKH
GLMLKLSLLLPCAKLLQLLWTLMSNRRMKVYLRDKVSTPRILNNGLPQGSVLAPTLFNIYISDMPYTSSQKFIYADDIAL
TTQAKSFQDIEATLNSDLSIMAEYFHKWRLRPNPTKSIVSAFHLDNRKAHNTLNVTFCGEKVRHDPTPTYLGVTLDRSLT
YHYHLRKTAMKTKARVNIIRKLASTSWGAKAAVLRTSAIALVFSTAEYCAPIWASSRHTKLIDTQLYSVMRTISGTLIST
PVQWLPVLSNITPPSIRRDAATYREIMRINSNPDLPIHRDLQDLPTRHMISRKPFWTxTEHLLYHNTEESWRKAWAENTF
PNKHLVSDPTMQQPGFNLPWSTWTTLNRIRTGHGRCGHLMYKWRLKTSPGCDCGNPDQTMEHIITSCPRYKFEGDILELH
SLSSRALVWLGNLELKL
>Vingi-1_EE_pol#LINE/Jockey 92-3073 [Erinaceus europaeus]
MDPSHFQSQQQAAPDSFQAVGPALRVLQLNVEGLSFAKRVLIGQLAIQHQADVICLQETHIAVDEAARFTISGFDLICYN
LHPKHGRAIYAKSCLADVYHTASSTFYDSITIGTIQLVNVYKPPSASWDNEVLPSPNHPAVYVGDFNSHHQDWGYSSTRA
DGSILADWASANDLSLLYDPKQPGSFHSARWNKDSSPDLCWISTVNGQAFPATRQVLKIFPHSHHRPAIIHIGLQLPLIL
CSEKLRWNFRKANWRLFSDLTNKSIPAIPINSIPSEDSYRRFRQAIFKAASQAIPRGRRANYTPCLDAECEQLLKQYDES
GDPDVADHLIASLDAARQARWQQLTESLNFTHSSRKAWKLLHRLGAGSQPPPVSHPPVSPNSVASHLTQVGRAKIDPVWK
REISHEWSSHFRLSCPSPKLSPFTLSELEDALKRVKPGTAAGYDNITPELILNLGPAAKKWLASFLSHILESESMPKVWR
RAKIIAVLKPKKDPTLAASYRPISLLSVCYKLLERLLLSRISHLTEKFLSPAQAGFRPGRSTCEQALALSTYIENGFQKN
LKTGAVFVDLTAAYDTVWHRGLLVKISRCLPPWVANTISFLLQNRRFRVHLGDKSSRWRLVSSGLPQGSVLAPTLFNIYI
NDLPETSSRKFIYADDICCATQASKFDILEETLTKDMSLISDYCKKWRLIPSTAKTVSSVFHLHHASASRELNVQLGDTR
IRHEAQPVYLGVTLDRTLSFHEHLIKTAAKVGARNNIIARLASSSWGASASTLRSSSLALCYSTAEYCAPVWFRSPHVHL
VDSKLYSSMRIISGTIRSTPVPWLPVLSNIAPPDIRRDAASSKFISHVYARPDLPIYADIFAHPVQRLTSRHPIWSPTPT
LNFSVPDSWKQSWQSAEVKNKHLITDPCERQPGFDLARYDWALLNRYRTGHGRCAAMFHRWGARDDPNCPCGYRQTMTHI
VNDCHLSRFKGGLETLHQAQPDAVDWLRKKGKR
>Outcast-1_DAn_gag#LINE/Jockey 225-1751  [Drosophila ananassae]
MAHSARGKTLSSDAASTKKLSQSFKKRKPNDSASAKMDLEKIDLEEMDILESSEKNHTTCSQPAPQTIFTDPDLSYHIDN
DISDTPKQVPLTYNNSHKGPYIVYIDKHTNEDENRKPINALELNASIFKLKLKDIVKVNKIGFGRCKAECKTAKAANELI
NSDLKKEGYDPKILKHFIFKTGIIFQIPTKFTLDELKEFIISPVPIHEIIRVNRKNENKEFVPTSRVKIIFEGSQIPEEI
NFLYTKVKVETYIPFSQCFRCFRFGHFAQHCKQTEEKCRNCSLPHPREEVCTTIKCVNCNHPHTATSLECPARKKAFAIQ
KCMTSQNLSRVEVRIRYPALFDKLTPSPPEIFNAKDFPVLQTPRSSAIPVLQDNAKLAAESIHRLLPYNKIAKNVQHRVN
ESKNSQGTIADWRKVIKEHEIALEERFVSLKNTPSPSQLAIPSSTSVYHNSALETAENSLINISSEIASFLLANNSETPV
NIRSFLESIKTKIAKTNTEIDLKKINLST
>Jockey-N2_CQ_gag#LINE/Jockey 114-1520  [Culex quinquefasciatus]
MPKAGRGRGSSSAASKNPRSSSTGRVQKGKQTNAVSAAIAQGSVSADGIDKKYLHPGYVPRSPVRTRSGTSGATTSGTST
SANIPIRNEFQMLSDDEENNNTDGSSTTDDDDDDGRARKKVSTPKKNNSPKERRPPPIFVLDTLADDVDELLEGLGYCLK
IGKSSVQVYTFDEKNFDLVVEKLKRQNFKFYTFDPVQKTAVKVVLQGYQDRPISDLKKDLSGAGITPRDIKVLSRKTTVT
GTHTLYLLYFDRGTVKIQDLRRTKALDGFWVNWRFYSKNPSDAAQCHRCQKFGHGSRNCNLPPRCVKCGESHLSEACALP
CKADLGDKAEQTKARIKCANCGGNHTSNYRGCSARKNYLEEQEKRKKKAAASHPPQRSTSETVPAAGHRTVPADNSAFPP
GWGRSFASVVAAGSGNTAQQEVTGEDLFTLPEFFALAGEMMTRFRTCRNKAEQFLALGELMIKHIYKG
>Jockey-9_DPer_gag#LINE/Jockey 4-1032  [Drosophila persimilis]
MAELGYYVIFIRAIKGRSDGQPLDQFELEIAPKPDESHHDVLQLTQLGNQLVTVERQAKPVDPAQCHRCQAFGHTRTYCR
RSFVCMKCAGAHASTACAKPRADAPKCANCQGAHISAYKGCPAFKAARGRLLSHRVAMQELRRKRSSLLQPLPEQQPPPA
RTTPAHPGRRQQQQQQAQTPANPWRGQQQQAAWTPLNVSSPGRRRGQQHQQKQKQQQPIHTKKQTPAASGPRTGRRRPEQ
PLSRSQAQQQQQLQQPQREQQQRQQQQHQLVNARSWQQPQQQRQFDPDHQQPSSRCDGSCRQVILENIKRMTQLEKKIEE
MTLLLSSFIPGQVNTNANDPSNA
>Jockey-N6B_CQ_gag#LINE/Jockey 80-1318  [Culex quinquefasciatus]
MEVEESSEEEDFRPVRGNRKRKKSSEVTGIGIEGEKVEKTLLNNNKFSPLADNKNNNNASPAGGGDAPAVPPPGQSAGKQ
KQPPLVVKNTTDFYKLVAIVESCKLGFKPIYKLTRFGTKVTCFSVKDFDKLQELLKKKKVEFYTHDRRSERNHRVVLRGF
PDELKPDEVKYLLKRDLKLDALEVHIIKRKEKSTVDETPYIVVFPKGYTNLKKLSAMKVVASTIIRWEAYRNKRPNVTQC
RNCLQLGHGTRNCHLKGRCNNCGGPHKTDECKVQEAEPKRCANCSGAHEATDRSCPKRADFIRRRQQASKPKPPARKAEK
QSPAVPAFTPAEFPPLPGAVPDGKSKDRPRPAGSSQGGPRDGGATEKEAGEVLYSSAELWGIFSEYIGRFKTCKTRLDQV
TLVSYMISKYGI
>Jockey_Ele3_gag#LINE/Jockey 233-1513  [Aedes aegypti]
MAEYVNKTLTHPTSASKSPTRVRSLDRISGQSMAYANTDACTSELDFTEGDGDTVASPFISPNQFEPLSDDDEGELPSAS
AQSKKPSKVRLPPIFIMDSTISDIFKLLKDCSTPQSEDFLLKRNKSSVQLLTKSKDVFDKTISTLKSKNVPFFTHGTSDN
VPAKFVLSGLPLAELSKLKDELTRVNINPSDVKVLSTTKTSQDTYALYVLYFPRGSVKIQDLRKTKALFNVAVSWRFYEK
RADDAAQCYRCQRFGHGSTNCNLAPKCVKCGGKHLTDGCTLPKKANLSSKQNDRSLLKCANCGANHTANFRGCPTRKAYL
ENLEKRKTKPVQRPPRMTNDDFPSLVGQGTALHRTSPNAKGRATYAQISANTPLATSANHCNENLFTISEFLCLARDMFA
RLSGCRTKEQQFFALSELMIKYLYHG
>Jockey-N6C_CQ_gag#LINE/Jockey 68-1288  [Culex quinquefasciatus]
MEVEESSDGDEFRPVDGTRKRRKTSDDGAVVGNGXEEHLLNNNKFSPLAENNNNNNNNGNPAGKGSVPPVPVVPVAKKPP
PLVVKNTSXAKLRSVMSPCTTKPSYKLTPFGIKLLCSSEERFETARAHLIANKVEFYTHEKRSERQLRVVVRGLPPASPE
FVKKXLKESXNLDAVEVHAIKRKGEFASSEETPYIVTFPKGYTNLKQLSEIKXLRAFHIRWEAYRNKRPNVTQCRNCLQL
GHGTRNCHLKGRCNNCGGPHKTDECEVQEAQPKRCANCSGAHEATDRSCPKRADFIRRRQQASKPKPPARKAEKQSPAVP
AFTPAEFPPLPGAVPDGKSKDRPRPAGSSQGGSRDGGATEEEAGEVLYSSAELWGIFSEYIGRFKTCKTRLDQVTLVSYM
ISKYGI
>L1_RS1_pol#LINE/L1 2099-5392  [Cercopithecinae]
MAGSSSHITILTLNVNGLNAPIKRHRLANWIKSQDPSVCCIQETHLTRRDIHRLKIKGWRKIYQANGEQKKAGVAILVSD
KTDFKPSKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLRDLQRDLDSHTIIMGDFNTPLSTLDRSTRQK
VNKDIQELNSSLQQADLIDIYRTLHPKSTEYTFFSAPHRTYSKIDHVIGSKALLSKCTRTEIITNCLSDHSAIKLELRTK
KLNQNRSTTWKLNNLLLNDYWVHNEMKAEIKMFFETNENKDTTYQNLWDTFKAVCRGKFIALNAHKRKQERSKIDTLTSQ
LKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFEKINKIDRPLARLIKKKREKNQIDAIKNDKGDI
TTDPTEIQTTIREYYKHLYANKLENLEEMDNFLDTYTLPRLNQEEVESLNRPIAGSEIEAIINSLPTKKSPGPDGFTAEF
YQRYKEELVPFLLKLFQSIEKEGILPNSFYEANIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIH
HDQVGFIPGMQGWFNIRKSINIIQHINRTKDKNHMIISIDAEKAFDKIQQPFMLKTLNKFGIDGTYLKIIRAIYDKPTAN
IILNGQKLEKFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLK
LISNFSKVSGYKINVQKSQAFLYTSNRQTESQIRNELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLSEIKEDTNKWK
NIPCSWIGRINIVKMAILPKVIYRFNAIPIKLPMSFFTELEKTALKFIWNQKRARISKTILSQKNKAGGITLPDFKLYYK
ATVTKTAWYWYQNRDIDQWNRTESSEIIPHIYSHLIFDKPERNKKWGKDSLFNKWCWENWLAISRKLKLDPFLTPYTKIN
SRWIRDLNVRPNTIKILEENLGSTIQDIGMGKDFMSKTPKATAAKAKIDKWDLIKLKSFCTAKETTIRVNRQPTEWEKIF
AIYSSDKGLISRTYKELKQIYKKKTNNPIKKWAKDMNRHFSKEDIHTANRHMKKCSS
>L1_Mdo4_pol#LINE/L1 2599-6405  [Monodelphis]
MLGNTQLVIITLNVNGMNSPIKRKRIAEWIRVQNPTICCLQETHMRKVDTHRVKVRGWSQIYWASTDKKKAGVAIMISDK
AKVKINLVKRDREGNYILIKGSIDSEEISVLNMYAPNGIASKFLKEKLEELKDEIDRKTILVGDLNLPLSELDKSNQKIN
KKEVREVNEILEKLELVDMWRKINRDKKEYTFFSAAHGTFTKIDHVLGHKNIANKCKRAEIINATFSDHNAMKIIISKGT
WRGKSKINWKLNNTILQNQLVKEQIIETINNFIEENDNDETSFQNLWDAAKAVLRGKFISLSSYINKLRRAEVNELGMQI
KKLESEQIKNPQMKTKLEILKLKGEINKIESQRTIDLINKTRSWYFEKTNKIDKVLVSLIKKRKEINQIDSIQDEKGDLT
SNEEEIKAIIKNYYAQLYGNKYGNLGDMDEYLQKYKLPRLKEEEINYLNNPISEKEIEQAIKELPKKKSPGPDGFTNEFY
QTFKEQLIPILNKLFDRIGQEGVLPNSFYDTNMVLIPKPGRSKTEKENYRPISLMNIDAKILNRILAKRLQQVITRVIHY
DQAGFIPGMQGWFNIRKTIHIIDHINKQTDKNHMIISIDAEKAFDKIQHPFLLKTLESIGIEGPFLKIINSIYLKPSANI
ICNGDKLEAFPIRSGVKQGCPLSPLLFNIVLETLAVAIREEKEIEGIKIGNEETKLSLFADDMMVYLRNPRESTKKLLEI
INNFSKVAGYKINPHKSSAFLYISNPFQQQELESEIPFKITLDNIKYLGIYLPRQTQELYEHNYKTLSTQLKLDLNNWKN
IDCSWVGRANIIKMTILPKLIYLFSAIPIELPKNFFTELEKXITKFIWKNKRSRISREIMKKNAKEGGLAVPDLKLYYKA
VVIKTIWYWLRDRKEDQWNRLGVNDLSKTVYDKPKDPSFWDKNPLFDKNCWENWKTVWERLGLDQHLTPYTKINSEWVND
LNIKKETISKLGEHRIVYMSDLWEGKDFKTKQDLERVTKCKINNFDYIKLKSFCTNKTNVTKIRRVATNWETIFIKTSDK
GLITQIYKELNQLYKKSSHSPIDKWARDMNRQFSAKEIKTINKHMKKCSTSLIIREMQIKTTLRYHLTPSRLANMTAMES
NECWRGCGKVGTLIHCWWSCELIQPFWRAIWNYAQRAIKDCLPFDPAIALLGLYPKEIIRKKTCTRIFIAALFVVAKNWK
MRGCPSIGEWLNKLWYMLVMEYYCAKRNNKVEEFHGDWNNLQEVMQSERSRTRKTLYTETDTLWYNRR
>L1_SS_gag#LINE/L1 1302-2189 [Suina]
MKKLRNHPQSNQQENSPKTVNNETDLCSXTDLEFKREIVKILKELREDMNSNADTLRKELENIRRSQEKLEHSFAEMQTE
LGAVKTRMNNAEERISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIAG
NFPNLKDTGFKIQEAQRAPNKLNPNRPTPRHIIIKMAKVSDKERILKAAREKQNVTYKGTPIRISADFSTETLQARREWQ
EIFKVLKGKNMQPRILYPARISFKIEGEIKIFPNKQKLKEYSNTKPRLKEILKGLL
>L1A_Oc_pol#LINE/L1 1193-5059 via tfasty with L1MA6_pol, 3 frameshifts and 1 stopcodon.  [Oryctolagus]
MGSSKHILENISGKMAGQSHYVSIVTLNINGLNSSVKRHRLDDWLTEHNPTICCLQETHLSNKEACRLKVKGWKKIFHAN
RNQKRAGVAILISDKINFNTKTVKRDKEGHYIMIKGSIQQEDVTIINVYAPNYRAPVYLKDMLRDLKGDLDSNTIVLGDF
NTPLSEIDRSSGQKINKETADLIDTIAQMDLTDIYRTFNPTSTDFTFFSAAHGTFSRIDHILGHKASLSKFKRIRIIPCS
FSDHSGMKLEISNSGNPRKYANTWRLNNMLLNEHWVIQEIKREIKNFLEVNEDNNTTYQNLWDTAKAVLRGKFIAIGAYI
KKLERHQINELSVHLKDLEKLQQTKPKSSRRREIIKTREEINRIESKKKKTLQKISQARSWFFEKINKIDTPLAQLTKKR
REKTQINKIRDEKVNVTTDTTEIKRIIRNYYKDLYASKQENLSEMDRFLDTCNLPKLNHEDIENLNRPITETEIETVIKA
LPTKKSPGPDGFTAEFYQTFKEELIPIILKLFRTIEKEGILPNSFYEASITLIPKPEKDAGLKENYRPISLMNIDAKILN
KILANRIQQHIRKIIHPDQVGFIPGMQGWFNVRKSINVIHHINRLQKKNHMVISIDAEKAFDKIQHPFMMKTLSKLGIEG
TFLNIIKAIYKKPTASILLNGEKLEAFPLKSGTRQGCPLSPLLFNIVLDVLARAIRQEKEIKGIQIKKEEVKLSLFADDM
ILYLEDPKNSTKRLLELIEEFGKVAGYKINAQKSTAFVYTSNAMAEKELLRSIPFTIATKTIKYLGINLTKDVKDLYDEN
YKTLKKEIEEDTKKWKNLPCSWIGRINIIKMSILPKAIYRFNAIPIKIPKTFFYDLEKMMLKFIWRHKRPRIAKAILYNK
NKAGGITIPDFRTYYRAVVIKTAWYWYRNRWIDQWNRIETPEINPNIYSQLLFDQGSKTNSWSKDSLFNKWCWENWISTC
RSMKQDPYLTSHTKIHSTWIKDLNPRPDTIKLLENIGETLQDIGTGKEFLEKTREAQAVKAKINYWDCIKLRSFCTAKET
VRRVKRQPTEWEKIFANYATDKGLITRIYKEIKKLHNIKTNNPLKRWTKDLNRHFSKEEIQMANRHMKKCSRSLAIREMQ
IKTTMRFHLTPVRMVHMQKSTNNRCWXGCGEKGTLTHCWWECKLVKPLWKSVWRFLRNLNITLPFDPAIPLLGIYPKEFK
LIKKKAVCTLMFVAAQFTIANTWNQPKCPSMVDWIKKLWDMYSLEYYTAVRNNEIQSFATKWRNLEHIMLSEVSQSQRDK
YHMFSLIGDN
>L1_SS_pol#LINE/L1 2710-6525 [Suina]
MAINNHLSIITLNVNGLNAPIKRHRVAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKIFHANRHDRKAGVATLISDK
IDFKTKDIKKDKEGHYLMIKGSIQGEDVTIVNIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKT
NKATEILKETIEKLDLIDIFRTLHPKKAEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGK
RKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHL
NELEKEEQKSPKVSRRKEIIKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEIT
TDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFY
QTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPDRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHH
DQVGFIPGSQGWFNIRKSISIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANI
ILNGEKLKAFSLKSGTRQGCPLSPLLFNXVLEVLATAIRQTKEIKGIHIGREEXKLSLYADDMXLYXENPKDSTPKLLEL
INKFSKVAGYKINIQKSVAFLYTSNETLEKEYKNTIPFKIAPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKD
IPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKA
TVIKTVWYWYQNRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINS
KWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVS
NDATDKGLISRIYKQLIQPNSKKANQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAI
INKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKTLLKRDTCTRMFIAALFT
IARTWKQPKCPSTDDWIRKMWYIYTMEYYSAIKKNDIMPFAATWMELENLXLSEMSQKDKDKYHMISLITGI
>L1_Ele13_pol#LINE/L1 1278-4460  [Aedes aegypti]
MDHASYNIATININNISSPTKIDALRTFLRTMELDIIFLQEVENDQLTLPGYNVICNIDHMRRGTAIALKEYIQFSNVER
SLDGRLIALRINNVTLCNVYAHSGTAFRAERERFFNSTISYYLRHNTPNVILAGDFNCVLRQCDATGSNDSPALKNTTQQ
LQLCDAWIKLCPRSSGHTYVTANSSSRLDRFYVSRGLQQHLRNSATHVCSFSDHQAVTLRICLPSLGRAPGRGFWTLRPH
LLTQENIEELRYRWQFWTRERRNYASWMAWWLLCAKRKLKSFFRWKSKIAYDEFHCEHQRLYSQLRRAYDDFYGQPALLT
TIHLLKAQMLALQRKFSKMFTRINESFIAGEDISSFHLGERTRKRTTITRLQSVDGQILHSSEDIEQHLYQYYSSLYTEE
AVVRNGLNNFFQSERAIPINDATNEACMSAICTEEIITAIKTSASKKSPGPDGIPKEFYLRTFDVIHREINLILNEALSG
QFPAEFVDGVIVLVKKKGGDETVRSYRPISLLNFDYKLLSRILKSRLETIMRTHDILSGAQKCANSSRNIFQATLSLKDR
LAQVIKRKQRAKLISFDLDSAFDRVRRAFLHQTMHSLGFNGHLVDLLAQIADRASSRLLVNGHLSPPIDIQRSVRQGCPL
SMHLFVIYLHPLVKELERICEEDLIVAYADDITIVCSSTQRVEMLRETFTRFELASGAKLNWRKTKAIDIGLIERDPLVV
PWLQTGNTIKVLGVMFTNSVRLMVKLNWDAAINNFMHQIRCHSMRCLNLHQRVIIANIFIMSKIWYLSSILSPYAVHIAK
ITSTLGRFIWSGIPTRIPMTQLSRDRKDGGLKLQLPAMKCKALMVNRHVQDLECLPFYKTFVESSDPTQTIPADLPDLKV
LCQQYQQLPIQIVQNPSADQIHRMYIDQTDKPKVEQEHPEVDWRRIWSSLHWRSFTAAERSNLFMLVNEKGDYRKLLYTM
RRVDGENCVYCNEPIETLQHKYSECQRVNAAWEFLQRRITAHLGGWRRITFNELIRPSLDGIERNRRIHILKLFIHYISF
VNNVNNVVDVNSLDFYLNVNC
>L1_AC_5_gag#LINE/L1 1132-2190  [Anolis carolinensis]
MATPKWRTDKDNKDSRLNVRRTSLPEEGGLKDILREIRKISEKQDQLQNEVQMIAKKQDLQQKTLQEELADLKKEWRGEM
GAMKKGLIKNSNDINELKIVNRKNDKMQTKLQEKMESMEERERKLEKIQEKLEFQSLEYQLRYRNIQEEEKENIGWVITQ
ITAKILQCTEQEACGQIDRVYRIQSNFTKKNKVIKDVMVHFLKKTTRDEVLRKNASNPIWYKERKAIILKEYPKSILNRR
RKYYFLTDELKRRQIKYRWEKYEGLMATYKDDRIWITSEDEAKDFYRMIKKDLNVNRLSLSSSNGKNPKETKKRRFDSPK
DNDPTVAELDLITDQEDSDMGEPTEDDGILKDE
>L1_AC_4_pol#LINE/L1 2236-6002 via tfasty with L1-24_ACar_pol, 1 frameshift. [Anolis carolinensis]
MSKVSCQLKCFSNNVNGLNSPNKRNRLFNKLRKEKYNIIAIQETHIDLKHVKLLNKGYLGQSFIAADNVKKRGVVLYVDD
KFPAKETFKDNEGRVIAVTIDFEKEIFLICNIYAPNGPKSKFTKTLTENINNSEFDHIILLGDFNGVLDVELDKTNRTKR
VKVTPSLPKNLIALKEEYDLIDPWRELNPKRKDYTHFSNRHQAWSRIDMIWTSKSLLTAISNIDILARDLSDHCPLIMII
NKKYVQKKWRLNENLFKKEHDINKIKAMTKEYFSINDNGETSPQTVWDAYKAVARGFFIQLSSSKRKQKDLEWSRLNKEI
EAKEKELKTNPKNQELKKSLALLVKMKEKRDLEEVAKRIKWVKQQAFENANKPGKWLARLIRKKKQNRQITKIKTEGKIL
NSDKEIREAFHKFYENLYSKDSINPETITEYLGKQKLDKISDEQRLDLNREISEKEILKAIKNLDSNKTPGPDGFIAGFY
KLEQPEVILFLIKIMNQALQDQVIPESWKEATITMIPKEGADLSEVRNYRPISLLNTDYKIFTKTLANRLKEFLDGWIGE
DQTGFLPSRTINDNVRIIIDALEFYEQHNQREVGFLSVDAEKAFDNLNWTFFKLLFQELDLGMQIQNAINSIYEDQWAKI
QINGQETNKIKITKGTRQGCPLSPLIFIMALEILLKAIKKDTNLQGIRLDKQDYKYRAFADDVICIIENPIQNTQKWILK
IEEFGKVAGLKINKEKTTILTKNMSKKRQKELHDTVGLETPSKIKYLGIWISAKNNQLLDLNYTRIWKEIKSDLEKWKYL
NISLMGRIAVIKMNILPKLLYLFQNIPIIRSTKLFKDWQKEIMRFVWKNKKARIKYSTMISRKNKGGFDVPDLKLYHDAC
ALCWLKDWIKLEKIKILNLEGHELRKGWHGYLWYEKAKIEKQFGNHFIRSALLRIWDKYKCRYYTKTPLWLSPIEANHRR
LLGWRNWPTYRELLIIDKEKKNPPKLKELITIQEINKNVSWYQYFQIKEAYKRDNLVGFEHDQGFWDKFILINKKNISIM
YNNLLSWDTEIAIVTNAMILWARNIERPIQMYEWEIIWNKKIKYTYSVDLKENWLKLIHRWYLTPKKIGLMYKNISNKCW
RCKTHIGTYFHMWWKCKKLEKFWNVVLEESNTILKTKFAKKPELLLLGLYDPNDKIDPNTDKLFTLSITAARLVIARLWK
SAQIPTKELWLEKLLEIKNMDQLSFLIKRTNGTVMKATDWTSFEDYLRNKIRTSKD
>L1_AC_6_pol#LINE/L1 2113-5897 via tfasty with L1-24_ACar_pol, 2 frameshifts. [Anolis carolinensis]
MNNFLESLRVFTNNINGLNSKIKKKRLFNTLLKNNYDITALQEVHIANKDVNYLTNNRLGKAFHSLDEKKKRGVTLYITE
KLKPVKEFSDQEGRVIAVKIFVGNESILICNVYMPNGPKRKFVKQLRTNINQVETDHLLIMGDFNGIMDCKMDRSSTKKN
SKKNVKKSFPKNMYQLMEEFDLCDIWRLKNPTQKDFTYYSNRHEIWTRIDMVWASKSLASKIQEIKIQARDLSDHCPITM
TINKRKNMVSWKLDNNLIKQEKDIEKLKQITKEYFQLNDKENIAPQTVWDAYKAVVRGFFIQQKSRNNKIKNQKLLTIQG
EIDKLEQKSKANPREGDILKKIKLLQKEKTNLQLESIANQLKWARQNAFENANKPGKWLARIIRKKKNKQQIIKISTKEK
DVFTDDEIKTEFEEYYKKLYEKDEINPEEITKYICSQKLQKITDDQRSKLNQEITIEEIKKAIQKLKLGKAPGPDGFTAE
FYKIEQEEILQFFKKIMNRAISEGRIPESWKQAEIILIHKDGTDSSNVRNYRPISLLNNDYKIYTKILAERFTNFLKDWI
TEDQAGFLPNRSTKDNIRIILDAIEYFDQNHQREVGFLALDAEKAFDNVNWEFFKLLFIELDMGTQFQNGINAIYSNQLA
KIKVNGLYTDKFEIQKGTRQGCPLSPLIFIFTLEVLMRSIKKAENLKGIKIDKQEVKVRAFADDVICIVENPRENIKDWL
KMIEEYGALAGFKINRKKTVILTKNISKKKQEELKDISGLETVKKIKYLGIWITSRNNQLLELNYGAKWHEIKKDLDSWK
NLKLSLLGRIAIIKMNILPKLLYLFRNIPIIRGKKIFTDWNREINKFIWQNKKPRVKFTTMTTPKERGGFDLPNLQLYHD
ACALEWIIDWVKLEKIKLLTIEGYNLRWGWHGYLWQDKRKIDKEFGNHFIRSALIAIWEKYKGYLYRKTPLWFSPLEASQ
RRLLGWQKWPTYKDIIKKESITREPPPVKDWKEIQKKYINITWLQYYQIKECYKKDKVIGFNINTNFWDNLLKREKKIIT
LIYNKILEWNTEKDIIKDSMLNWSRNVGRAITIDEWNTIWNKNTKICYSIELKENWLKIVHRWYLTPKKIGSMYKDRNNL
CWHCKKQVGSYFHMWWSCKVIKNFWSIIHRECKKIFKVNFECKPEYFLLGLYNFKNKKDLNSETGEINKGEIFIYAITAA
RTVVAKNWKEGKNLTKEAWLEKLMDIKNMDRLTYLLKKVNGRPMKETNWTLLDNYMQEPAS
>L1_Ele5_gag#LINE/L1 171-1193  [Aedes aegypti]
MAAVRARENTFKVDLSNFPKRPSFEEIHSFVHETIGLSVDQVLRLQMNHAQNCAHVKCRDLKTAQDAVDHHNGRHELEVN
KTKFKVRLMMDDGGVEVKIHDLSENVRNEDIAAFLKQYGEIISIKELVWGDNFAFKGVSSGVRVAKMILHRHIKSFVTIM
GEESLISYRNQPQYCRHCTNPSHPGLTCVENKKLLGQKTDLNNRLKAVQKKTSYASVLDRSKVVASLMPEFVATNLNELN
ANARSSTSTAVVEERGASGVSPPAAPADDERMEEGEIQKNTSDDTDAATADAAAAAAAATVVENIAAAPVAGSSAVPLLP
PLLPPLLPPLMPPLMPRLLML
>L1_AC_9_pol#LINE/L1 2381-6130  [Anolis carolinensis]
MDWSLRCYSNNVNGLNCPQKRNKIFSQLKKQKYDVIALQESHISQRFVALLSQKALGKEYYSAAPDKKKGVVIYVKNNIP
SELAFKDTEGRIVAIRIERGGHRLLICNIYSPNGSKGKFVKKLRELIGEQKFDDLILLGDFNGVIDNKIDRQIQSKKKGQ
ENLGQLPQSFINLKKEYDLVDIWRLYHGTEKDYTYFSSRHNNWSRIDMIWSTKTISTKINKISILPRKDTDHCPLELKLN
YKPGMKKWRLNENLLQKEEDIEKNKKLLKEYFLFNTTADVDDGIIWDASKAVMRGNFIQQNAIKNKLRNQKSLEIHKAIE
LAEKNLKKNPKNSKLGQELDYLNKQRQQLEMEQRAKELKFVKQYHFQNANKPGKWLTRTLRRKRQEQWITQIKDGTKVYT
SEKEIMDQFSKYFGNLYKSDHINREEVMLYLGRQKIQRLTDDQREMLNKDISHKEIDIAIRKLDPNKAPGPDGLTPIYYK
RLKDDLIPHLQKVMNNALHQKQIPKSWKEANIILLPKDNSDPNNIKNYRPISLLNTDYKIFALIIAERLKLYLTNWIKEE
QSGFLPDRSIKNNVRSLVNIIEYYEKHNQKEVAIMTVDAEKAFDRINWDLFKMLMREMDIGNNFMNAIQAIYEDQTANIW
VNGQSSNKIRVEKGTRQGCPLSPLIFVMSLELLLNNLRDDDNLKGLKIGKETYKLRAFADDLVCIIEDPLNNIKKWLREI
EDFGKISGFRINKDKSMILTKNVSKERQSQISDITGMKTPTKIKYLGIYLTTKNSQLLQNNYINKWKEIKNNLKNWSSLK
LSLLGRIAVIKSNVLPKMIYLFQNLPIIRNQKLFKEWNKDISKFIWNNKKPRINYTNLTDAKNRGGLGLPNLALYSEACG
LDWVRDWINLSNKKMLTLEGHDLRAGWHAYLWYNKAPIEKNFGNHFIRSALLKIWNKYKQRIYNKTPLWVSSMEARQRRE
LGWNTWPTYRDILEKEGREIKLKSQEELKLKYGNLTWLQYYQLKESFNKDKIQGFEDKVTPWDVILDKGKRKIAKIYKFL
LEWSTEKEQIKECMTNWARDLGRTILLEEWELLWGEKLNYTYAYELKENWWKMFYRWHLTPKRISKFTKGKKIKCWKCGR
GEGSYLHMWWSCEKVKPYWREIHDKCQKILKIKIPLLPEFFLLGMTNNQWGKNEDKIFTHLTTAARLVLARLWKQKLIPK
VEEWIKRIWDIMNMDYLTFLLSTTQNKPKKGIDWTLVKDWMKKEKVRILL
>L1Mdo1_pol#LINE/L1 1-3807  [Monodelphis]
MPANPQMTIITLNVNGMNSPIKRRQIADWIRTQNPTICCLQETHMRRVDTHKVRIKGWSKTFWASTDRKKAGVAIMISDK
AKAKIDLIKRDREGKYILLKGSIDNEEISLINMYAPNGIASKFLIEKLGELKEEIDSKTILVGDLNQPLSNLDKSNQKIN
KKEVKEVNEILEKLELIDIWRKINRDKKEYTFFSAPHGTFTKIDHTLGHRNMALKCRKAEIINAAFSDHKAIKILIGKGT
WRAKSKINWKLNNMILQNRXVREEIIETINNFVEENDNGETSFQTLWDAAKAVLRGKFISLSAYINKLGRTEIKELEMQI
KKLENEQIKNPQKKTKLEILKIKGEINKIESDRTIELINKTRSWYFEKTDKIDKVLVNLIKKRKEERQINSIKDEKGDLT
SNEEEIKAIIKNYFAQLYGNKYTNLGDMDEYLQKYKLPRLTEEEIDFLNNPISEKEIQQAIKELPKKKSPGPDGFTSEFY
QTFKEQLTPILYKLFDIISKEGVLPNSFYDTNMVLIPKPGRPKTEKENYRPISLMNIDAKILNRILAKRLQQVIRRVIHH
DQVGFIPGMQGWFNIRKTIHIIDHINKQTNKNHMIISIDAEKAFDKIQHPFLLKTLESIGIEGSFLKIINSIYLKPSTNI
ICNGDKLNPFPLRSGVKQGCPLSPLLFDIVLETLAVAIREEKEIEGIKIGKEETKLSLFADDMMVYLKNPRDSTKKLIEI
INNFSKVAGYKINPHKSSAFLYXSNTAQQQELEREIPFKITLDKIKYLGIYLPRQTQELYEHNYKTLSTQLKLDLNNWKN
INCSWVGRANIIKMTILPKLIYLFSAIPMELPKXFFTDLEKTITKFIWKNKRSRISREIMKKNTKEGGLAVPDLRLYYKA
AVIKTIWYWLRDRKEDQWNRLGASDLSKTVYDKPKDPSFWDKNPLFHKNCWENWRTVWERLGLDQHLTPYTKINSKWVND
LNIKKETIRKLGEHRIVYMSDLWEGKDFKTKQDLERVTKCKINNLEYIKLKSFCTNKTNVTKIRRVATNWETIFIKTSDK
GLITQIYKELNQLYKKSSHSPIDKWARDMNRQFSAKEIKTINKHMKKCSTSLIIREMQIKTTLRYHLTPSRLANMTAMES
NECWRGCGKVGTLIHCWWSCELIQPFWRAIWNYAQRVIKDCLPFDPAIALLGLYPKEIIRKKTCTRIFIAALFVVAKNWK
TRGCPSIGEWLNKLWYMLVMEYYCAKRNNKVEEFHGDWNNLQEVMQSERSRTRKTLYTETDTLWYNRR
>LINE_LS_pol#LINE/L1 gi|19519|emb|Z17425.1|LSLINERPT Lilium speciosum for two putative cds's 835-3541 via tfasty with 8096424_Osa, 11 frameshift and 4 stopcodons. [Lilium speciosum]
GGDFNSTLSPDERVGGSVELRDLRAFGDFVSDCSLFDIPLSGGRFTWTNGHHFAQLDRFLASDTWLISHPNSCLRVMTAT
VSDHCPIILMAPPRPTPIIRFEAVWIGEEGFGEGLARAWRRDHXSLRAALNLSSKVRALRVFCRRWRGQLGRQRRYTDHL
ISLIEPLEVQREGGTLPPGGHSNWGFLHSVLDEEHHREEIYWRQRSGCWMEEGVRNTSFFHRVNAIANRTPSTVWSALMS
SILTRPLSWGWATQYFRTALSPSNADSSVCLGRSGPVRPWPSSMDDPFTLEEVRAPVFGYAACGSTGPDGIPFLSISRFW
SLVGVDLLAHLHDFYRGGRLDPINHSYLTFIPKPGRGKRVEDFRPITLANASYKIVIEVLANRLRGVSVNLIHDSQSAFV
PGRSILDSVALAEELFATVREEKMAIKIDFRWAFESLNWNFLIECLRVKGFNDRWIGWVRSCLGSSRATVLVTGQPRHYF
RVRRGVKQRCPLSPLLFILAAGVLGALIRGASARGSFPWSSGGGFVWLVSGFQFADDTLIFSDHPQEAENLLSSCLVLAA
SVLELNCAKTQTLLLGTIEERAADLASLRCSRGTLPMTYLGISQSDRPLPRNCWDGLIRQVQDRLASWQNRSLSWGARLT
LINAVLAQISTFLFSYHWRPESVLRHLDGLRRSFFWRGREGYPGLVLAGWEGICRRGEEGGLGVTNLRDFNRALLAKWLW
ILVSVQGVCGRWWXGNVYFERHPLSGLTGRTLGSISALWRGVTRVIAPFRPASPIMWVRGRWSFWEDIWLGPTHLGVDST
PLRCPPGYRGRTASLYLGARGWSFSTFRTTGGEALAQLRSLLSLLAGTSPISGERDVPHLRLEGNGIFSVRSFYSFLHTG
GLLSLVADTLWSVRAPAKVLVFGW
>LINE1-42_ZM_gag#LINE/L1 327-2762 [Zea mays]
MVGYPAPTPPSSVSPRPCRASLAGAVGSSEADQLVLSQGSARSFPSEGGWQVVARRRSGRPPPAPRRWSPEDLRGRCFNC
LSPSHFVASCRRPSRCFRCLGFGHRAPGCPLKVARKAHPEHQVGRVSVWQRLGAMQDPAQHGGFRRRESVWRRISPSQPA
TGGELLSPPLMARGSGESTPLAAGGRRKRRRAKRRRAAVGDTQEQRSRSPTSASSGGLGAEGAVQHVVCVETPSCVLDFS
IEMAREEAALRKALFVTVTGTRPEVPAVDIIEEIAQSFNVNRANMSIHRTLPEDFLVFFPDEDTVSRVLNGGKIFRGPQF
DLVFKRWTRCANASTASLPVLLDVEIRGIPAHAWSRATAEQLLRDSCIIDELHPATVLKSDFSSFMLRAWCINRAKLHRN
MDLLITEKGPGSGEKRCLSYKLNILATPVPVEDGALPADVGDGAPPDGDGGHTPGGGGGHQPGGSRGLSSRPSSPRHPRG
SDGGRRSALSRLGSQQPSRRVGNDLVIAPGETINGAVGEAAEVLPSVLCPSTEGAELNVGDVRVSDGMPDRQAEELLPDK
EAEELIPDRQADESLGRALDGLVSPRCLSSLVGTAEEKGQCEAEELFPDRQADESLGRALDGLVSPRCLSSLAGTAEEIG
QCEAAGQGCPTLKVYSRRRQRDPLQQTPSPLEDTSVESDHVKDTTPVCDFVALVTKKTDGLLPPPVPLRRGCKQLPPDFI
PRRSSRLARQRTPNDATRQIQFELLRTMDIGGADEAFSDKALEKYGRLFNSPLSESHIKALAALFGWSVPVDIHLQDVQV
LPAVLGPEDIM
>OSLINE1-3_gag#LINE/L1 75-2075  [Oryza sativa]
MANQGGGAWRGRFNPRPMRNFGEGRKPQAPTFSTGGESLQGIGGGALGDQAKTMAARGATKQQYRPIQHKEPAKETEKGD
TSVLQPEQPLQSNPRAGNNPIPQRFFCQRCKNVGHLARDCNVSVFCINCAKPSHRTEDCLYDKQPRPVAKLVGYGAPGLG
CILIQNTRPDSPKEHANPLAMVSIVFGREFTESQLEQGFTQQFKWNWQWKAKAMPNGTFQMRFPNKIKFEELSNFDYFNV
KGTDVQVNVKEWTQESDAVGKMHTAWVKVSGIPDAMRGYQALYEVGSNLGTVMEVDMATFRASNVIRFKVGMMELESLPL
KLILTTPKGLLYQAHFELEEVVEQGWFNESIFEEVQVGSESFLKSGQKSGQRDGKQIMEMGDKISPGILLRGNGSKDDPT
DMLCPTTMIEESQIKCAQILRDRALAFQLQEAEAKSTTDCGIEVGMTSGETILTEETQVLLTQDKKWEQAGNRGMAVNTI
DSEATEVGDEGIDREDERVHLGDSEDYMDSQESEGSFAKRLGINLVEDNTGSQEEEMRRSKRLKEKEDLKPQDMAMQRKE
AQNAFVNKGQNTVPSIINESNVSLINMANILGVSLGCAIEDVESNLNLIKNLESARINLFMKEGEADKNAELKKKEMEGM
STDQEWSDDSSDNSTLDEIEQMLKQV
>OSLINE1_2_gag#LINE/L1 31-2127  [Oryza sativa]
MFWRELGSGRHPGDWVAAAFSSHERRIWMEVLSDLLRKSAEVTSAICNWVGDQVNRAGSGWIWPNAFRHRAGWRPIMGQW
NPNPRRRADMKFGRITPVVKFWYGKFYRGHTKDIIDVDLFWRSTVKEKDSELLGYKFRYKEGIKSKISLGSQISSAGFNL
GFGHLALVLKVMAAAEGGGDQGTINAIVAHPKPSGASSLPPGSRLESELQAVLVLNQSVDGIHDQATGSRVLPSSGNHDG
GLASNNLSSQGPTVFTEGEVVDEEEDAVEIEIEENEVQKAGQWTILARFYSLKFPNQSALFEDMRRAWRLRAEMSYKSLK
DNLFIVSFNAEGDYNFVLQGDPWLHRGDALLVAEFNGLLNPSMVNLDTVPIWVRIYDLPLVMMNRARGELYGSKMGKVRE
VDVQEDGCNKHDFFRIRVDLPVNRPLRRMLAIKIKVQGKEETRRFHLRYERVPHFCFFCGFIGHSDKECEKRLTNENEPL
VFSAELRCSPLKPFERKVGKVKAVHSQGVQRKLSFRGPGSVSSSSAGIRQDAKRYEDQPTRVDAFDGFDIREGKGEDSID
SQLADQTNMLHVSEVSSLGQKKGKDLVSKETSSIPSMEMIPAIRDLNVQQVSFGDGSTEEFGSPTKRKALPTTKSSGIVQ
QAVLEYGQRGAEETASSTRAMKRLKKGVEANTGVEDMEATSLGAAGKLAGPMRGSRQEK
>OSLINE1-4_gag#LINE/L1 2-967 (fragment) [Oryza sativa]
MNFTRRYDVARLQVLVLDPSLIPDVVDVVIGDHLYELSFIVEPDNGSDEPVPMDMENLDDGTLEKEEGNLNQDLGKGSGG
DPGNDSLIGSGGQVSERGGPSIPAAHLSLIPESDGLTVSDEEFDGLDEDSVMVKKVNTQQSLGEKLAAIPEAVISPSRKS
KRRASDSDQLVLQRAEKLKADKNLDNLQAKGNFHDNVSFLQFTNEQISAALDNLGVITLGTNFILDDVKNDLKSIEEKRL
SKYVSSSVNQVHTSNVDSEILDDQVDDNSLLQHLCGELMEEVMDFSAVDDNYSQTTLNSLDTSPNSKKKTKRGKKKKNIF
K
>LINE1-17_SBi_gag#LINE/L1 126-1679  [Sorghum bicolor]
MIFPGLSFXEGAKVQAEVAXLFSLPITFPELVPSSFALVAAFGRCKFRLDASSVGHLLQAAIGGXAAHFRVSHLGGRTFK
FFVCSRRVGFFIVNLRSFSCPSFSLTFHLWGNGGPDWRRELRLFELEEAXSWSPAVASRRGQXNLPPNQLPQPRKXFADA
VRLGPVQKLTGANAIPLGRRSAFLRLQRPRSPLLPSAGXLGARSNGGRSSNGGSTGSRNSGPRDKXAXLFCPRCLSSGHR
RVDCRRPLKCYACMQWGHAEFYCRSRPAVKTGKHAGNSNRPAPRAGWANRAETGPYRTPDLNLTVFPEPVSPEQQLWAAG
EAAPRQPITVLPEGGGGSPSLTLGLALDPSPFTPHSSPSTVNPTAPSPSDQLRPAVVHHSTLDMAYQRADPRPFIPEGFI
WNDVQDRVFMSRAVAPSRPPAMNEDLAIATFSPLPGNELSFAIIRNTIRAFLAQRGVQYHAIMPCHLGQAYVRFRHAYDR
DNMVQLSPMVFGNIEIKFVKHDQGRTGGQLILMMMSGC
>L1PA16_pol#LINE/L1 2813-6640  [Primates]
MIGSKPHISILTLNVNGLNAPLKRHRVASWIKKQDPSVCCLQETHLTRNDTHRLKVKGWRKIYHANGKQKRAGVAILISD
KTDFKPTTVKKDKEGHYIMIKGSIQQEDLTILNIYAPNIGAPRFIKQVLLDLRKDLDSHTIIVGDFNTPLTALDRSSRQK
TNKEILDLNSTLDQLDLIDIYRILHPSTTEYTFFSSAHGTYSKIDHMLSHKASLNKFKKIEIIPTILSDHSGIKIEINTK
KISQNHTITWKLNNLLLNDFWVNNEIKAEIKKXFEINENRDTTYQNLWDAAKAVLRGKFIALNAYLKKLERSQINDLTSH
LEELEKQEQTNPKASRRKEITKIRAELNEIETQKSIQRINETKSWFFERINKINRPLARLTKKKREKIQISTIRNDKGDI
TTDPTEIQKILRDYYEHLYAHKLENLEEMDKFLETHNLPRLNQEEIETLNRPISSSEIESVIKNLPTKKSPGPDGFTAEF
YQTYKEELVPILLKLFQKIEEEGLLPNSFYEASITLIPKPGKDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKLIH
HDQVGFIPGMQGWFNIRKSINVIHHINRIKNKNHMIISIDAEKAFDKIQHPFMIKTLXKLGIEGTYLKIIRAIYDKPTAN
IILNGQKLEAFPLRTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQIGKEEVKLSLFADDMILYLENPKDSAKRLLE
LINDFSKVSGYKINVQKSVAFLYTNNVQAESQIKNAIPFTIATKKIKYLGIHLTKEVKDLYKENYKTLLKEIIDDTNKWK
NIPCSWIGRINIVKMAILPKAIYRFNAIPIKLPMSFFTELEKTILKFIWNQKRAQIAKAILSKKNKAGGITLPDFKLYYK
ATVTKTAWYWYKNRHIDQWNRIENPEIKPHTYSHLIFDKVDKNKQWGKDSLFNKWCWDSWLAICRRMKLDPYLSPYTKIN
SRWIKDLNVRPQTIRILEENLGNTILDIGLGKEFMTKSSKAIATKTKIDKWDLIKLKSFCTAKETINRVNRQPTEWEKIF
ANYASDKGLISRIYKELKQFNKQKTNNPIKKWAKDMNRHFSKEDIQAANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMA
IIKKSKNNRCWRGCGEKGTLIHCWWECKLVQPLWKAVWRFLKELKTELPFDPAIPLLGIYPKENKSFYQKDTCTRMFIAA
LFTIAKTWNQPRCPSTVDWIKKMWYIYTMEYYAAIKKNEIMSFAATWMQLEAIILSELTQEQKTKYRMFSLISGS
>L1PA15_gag#LINE/L1 L1PA15-16_5end_1738-2740 via tfasty with L1PA10_gag, 1 frameshift and 2 stopcodons (latter replaced with arginines as in other subfamilies). [Primates]
MRRNQRKNSGTMKNLNVVTPPKDHTSSPAMVPNQNGNSEMTDKEFKAWIARKLNEIQDKVENQHKETSKAIQEMKEEINI
LKRNQSELLELKNSLKEFQNTIESFINRLDQAEERISELEDRSFELTQSDKNKEKRILKNEQSLREIWDYVKRPNLRIIG
IPEREGEKVNNLENIFEGIIQENFPNLAREVDIQIQEIQRTPARYYTKRTSPRHIVTRLSKVNAKEKILKAAREKGQITY
KGNPIRLTADFSAETLQARRDWGPIFSILKEKKFQPRISYPAKLSFISEGEIKSFPDKQALREFVTTRPALQEILKGVLN
METKERYLLPQKHT
>L1SU_SP_pol#LINE/L1 1297-4968 [Strongylocentrotus purpuratus]
MAVKLSFMTLNVRGIRDRLKRMNIFEWCKTKKNSIIFLQETYSTVEIEERWKQDWGGPMFFSHGSNHSRGVLILFSNHLD
FEEKKIKVDEEGRYIIFKGEIQRVKMLLVNVYFPTRDKETLQIEFLKKLDESIFDQCDRDYLVLLGGDFNSILDGKLDYV
GSKTPVKSRVIDLIKEFLNKYDLEDIWRKKNPNVKQFTFRQNWPVVQSRLDYWFIPCSVEKLVGTCEILTSITPDHSGVR
LEFNDLVDKFVFGKSYWKFNSSLCMDKDFVEEMNKEIQELKVEWSLQILNKLVFWDFLKMKMREFIITYSRKKAKARRVE
IELLEKQIKDLEGELVVGPTKYIVDCIEEKRDKLNKLYDFSRQGIKIRSRAPWFEDGENNTQYFEQFLKSNKRKSVIREV
YKENGETTRDKEEILKEIKLFYKDLYSLRADINQNDPFFFNDISKLNEDNKEICEGKLTKDECLKVLKEMKLNKTPGNDG
LTVEFYYTFWPALGDLLVEVLNETYERGELTASQKQGVITLIEKEAKDTLHIKNYRPITLLNVDYKIVSKVLAKRMKEVL
NEIIHHDQVGYIKDRNIGEAVRLIDDMLFYSMHYGEQGKGFLCAVDFEKAFDSVSHRYLFQILKLFGFGDSFCSWVKLLY
KGISSCVMNGGHSTGYFEIERGVRQGDPLSPYLFLVAIEILAHAVRRDNGIKGITFGKSEIRQVLYADDMTIFLKDIDSV
RRLQYIFESFEKISGLKVNKTKTHFMWMGEDENKPDGPLFGNLVKEIHILGVSYSLDRSLKDDLNYKEILSKIKKLLVWW
KQRDLTIMGKIHLLKTYALSKLNYISSLVIVPHWVYKEVAKISFEFIWRGKDRIKRAIMYQDYDFGGLRMINFEMSVKIQ
RIMWIKRLLYGEKSLGWKLFFDHCLQFVGGRFIFLCDYDLNKIKLVLDIPPYYMEMLQAWQETSNLRYLEGYINPIIFNN
QNICINGKSIFDRYLFERGIVQLNHLVEKGHVKPVKYFMNLGMKGNNLLMIIDIYDAIPRLWKDDSGLIEFLEVDLISFN
TYFHISSKKIQFVDVGSRTIYDYFIKALQRTYDLQVRDGQNDYDFIDKELKEIFVRPRITILIRKQREFQFKLLHGAIYT
NEHLHRFGFVGDNLCSFCKQEIETYKHLFLSCGSVQRLWQALIQLFELDEIKDLEWRDIFVGLVGSSYRIKMCNTIIFMV
KYVTFMSRSGGASTNFRKDEKKHF
>LINE1-12_SBi_gag#LINE/L1 1436-3382  [Sorghum bicolor]
MGKSVNVACEFCGLFNHASLDCRRMLCEICGFTNHNTFDCKKCLPWNYGPELCATQVEEQSFFFIEECIDSRVAIEKAST
AVIKVVEGNANAKQIEFEFMNLIGADTWRWRARPIADKKFLLRFPSAKMVTEWSRIKNLTLRNDAQITIETWSPAVGAKG
ILQTAWFRVSGIPADQRSIKTLAKIGGLVGKVLEIDEGSRYRYDYVRLKIACRDVTRVPKTAESFLGMYLIDFGFEREVT
MESGPKMLKSGITVGDPESQPPAKRTKSGMDAGKSQLEEKNESLSGAGDTSNKGKENDTSKQSQVCWSAPPKVGCGDLTT
TNPKSVAQKSFRKRCIDDDGEKVHIPETLEDSDSDSDSFAQKLASLAGLDGVGQTSKNDQENNSKQIWFMNETSEINIKE
MSLXKLDDKLKEDDTKGVSVTVNTQSPEIFLSDDTIVNTQESEIMDIDGGTIKGGALPLSDYEVQIEKTVPEQERRRSER
LKKITPLTNLEELERNTEDTSFEGIYSNHNSFSVLLDDDISHITSCMGIVVDESSFDTFNLIRDLEKARDDLYQKQIVKN
QKPQTDLVEGGLEEDVPLAIEWINDESSESEDFILVESRRKKREKRKSLMLANSQNNRRIIQETPDDLKKKKGKLSKKNV
TKNIKKVKK
>LINE1-9_SBi_pol#LINE/L1 3435-7032 via tfasty with Isabelle_TM_pol, 1 frameshift. [Sorghum bicolor]
MAVKLWKVLSWNIRGINSEKKWNAIRDRISENNCDVICLQETKRASFDTTFIRLFCPTHFDCFEFLPSNGASGGSIIIWK
SSVFSGSLIFQNSYATSVLFSCVHNNASWILTNIYAPCTPAGKKEFIQWFQNIQMPDNVDWLVVGDFNLYRNPLDRNKPG
ADVADMLMFNEAISALGLVELPLKGQRFTWTNKQLPPLLERLDWFFSSPNWTFSFPNTFVSTLVMETSDHVPCLITISTD
IPKGCIFRFENFWLQRDDFMNQVQAAWDTPIYHSDAAKILTAKFKILRKVLKQWNQTLSNLKQNIANVKLILTFVNMLEE
FRDLSIIEWNFRKSLERKLISLLQQQRAYWKQRGHIKWVTLGDASTKFFHAQATIKHRRNFITRLDDDQGSSFYSHHEKA
ELIWLSFKERLGTSNPSPLHFDLPSFFVNNTDLSSLVLEFSRAEVDDVVKQLPSNKAPGPDGFNTDFIKHCWPIINTDFY
NLCDAFYDGAVCLQSINGSHITLVPKKDDALRINDYRPISLLNISVKIITKLLANRLQKKLPALLHKNQYGFIKQRTIQD
CIAWALEYAHTCHQTRREIIILKLDFEKAFDRIEHSFMLKIMEHKGFPSKWLQWMNLIFQSGTSAVLLNGVPGKTFHCRR
GVRQGDPLSPLLFVLVADFLQSILNDARMNNRLSLPIPSLSDQDFPILQYADDTLIFMNGDIDELNNLKDILSSLADSSG
LKVNFDKSMMVPLNVSEERLDILASTFGCSKGSLPFTYLGLPLGLTKPSVADFWPLVSKCERRLVAFSSFLSEAGRLELT
NSVLTALPTFAMCTFQLPKTIIKHIDKYRKHCLWRGSDVNNKKPPKAAWQMVTLPKDEGGLGVLNLSVHNESLLLKHLHK
FYNKANIPWVQLVWEKYYAGDKLPSQSFSFRGSFWWRDNLKLLPSFKDMARVSIQDGKSCLLWHDIWNDVPCSEAFPELF
SFVRNQNSSFYWAANTQDFYDLFHLPLSPEAFAQYQILQAEVQNVTLNNTPDQWSYLWGSVLFSSSRSYKHLIGHHQIHV
AFKWLWKSCCQNKRKFFFWLVLQDRLNTRALLKRKHMSLPDYHCVLCNSGIDEDILHLLFHCPFSLACWSSLQLIIPNSQ
DVGFIVESIKRQLHLPFFMEVLITMCWSIWSMRNDVIFRNIPHSVNRCKQVFKKEFALVILRAKAKYQPHIDLWIQSFV
>L1-15_XT_pol#LINE/L1 1616-5347  [Xenopus (silurana) tropicalis]
MAIQFTSWNVRGLNCPIKRRLVLDFLKKHNTSIAFLQETHLTGSKILALKRPWVGWSYHATYSTHSSGVAILIGKKVPFR
FGSLKSDPKGRYIFLHCYFYACELLLANIYIPPPYDPEILLILSDLMSQFPHALVIIAGDFNEVFTPSIDRTWKQPDKAP
PKTTQLARMVTSLALLDPWRIANPNTRQFSCFSTSYLSLSRIDLVLVNAAMIPYINKVKYLPRGISDHAPVQIQWQLPYK
IKNSRPAINPIWLNILDNYTTVEASIKEFITLNQSSNPILPFWDALKIYLRNSISAEISAYKHQAKAAHKELEDQXSHLD
RQAANLQTPETLTALREAQEKYAESLRQKALQKHYFSKINIYEHGERSGKMLAHLAKTHSTPPPIPALKDSKGTLCTDPS
EIENLLVTYYKDLYSTKLQASAEDIRAFLEPLNLPSLPQEYREFLESNITDTETQEAIDSFPQGKAAGSDGIPIELYKKH
AKSLTPLLTKMYEEAQLTGTLPESLYEAAIVLLPKPGKDPQLCESFRPISLLTADVKIYAKILARRLARVITKIINPDQI
GFIPTKTTVLNTRRLYLNLTLTPNNTGNRAIAALDIAKAFDTVEWPYLWCVMKQLGFGPKFIQMVQLLYKSPKATLRINS
LCTSNFTLSRGTRQGCPLSPLLFALAIEPFAQAVRKHPLIRGYEQKATIEKIQLYADDTLVYLGDTGQSLTALIELTAKF
GSISGLKTNTSKSILYLVDEQNXNDPCGTCPLQVTNKFTYLGIQVALPITKYTELNLNPLLPWLQEKFKNWETLPIGPAG
KIHLIKMFILPKMLYILWHSPTPIPKKIFTKIHSQFTKFIWGTSRARLRLSTLMRPRDKGGIALPDIYMYYLAAQLTHIS
PMIHQELSPPLFQLWAQATGYPEAPWHALLVKQKPSEHSPLIALQRSVLSAAHKLINYMGHPPQTPIWQNAHFPQLAQCN
PPNIWRSLELNTIGDVWENGQTIPFMNLHKTRHLPLNQWLTYHKIKRALTTALPNNGPMVNNSPVLESLLLPNQRSKLSI
LYKLLSKPTYCDTEVRSRARWEEELGTIITDDQWEWVLNTPLIVSFSQRHKLLQLYTIHRAYYTVQRLHAMKLLNSPYCP
RCKTEIATLIHTLWGCSHLKDYWDGVCGWIEKKIPEWGPGDARKCLLMLDLNTSLDLHTKIFITKALFQAKRILTLHWKD
TEPPSMHEWKKAMDDLASLERTILDKKGQMLKFLQIWRHWVDTV
>L1-13_STu_gag#LINE/L1 121-2091 [Solanum tuberosum]
MDEDVIYFVMGFKSYDITRTISRAETWYEWVERGRKMVTRASFSQKTMEWVGFVLREASKTKGNSVKRWKFHDHASEFFC
SRNFNKSGRYISIINMQGKRKAVIIIPEWSFNSGWLDIAFKITDFINAKRKRTETLIHRNTEKGLLYADAVRNNKWTTRE
MNAAKTHRQGNSLVISDEAGRTQNELLARCVVGSLPEEIPNVILSEIRQWSTSTWKHLHGVNIYEMGRNQFLFELPTKKD
ADHIVKGTWFWKNHKFLLNWWSSTSNAITENLKQVWIRLVGLPLQFWSQKILQEIGDLCGGWIQTEEETELRNHLKWARL
KVKGDEISVPKVVELKHDGKIFRIQVWIEAPARVLTEGPRENLTFVQRFIEKPYNKRGGGGLVCTDVTGHVGTSESQGNL
NYTAVQTWESTREEVVGTEAHGASHDLNLNEGKGKRKGLKILGQDPMAQWANRFEKAFVIKSLGDPLMDETEANQIIIDT
FPQQNSGEKQILSSINLDTREEGGEEEFQFEGPIDEDAMSIIHIDDRGDLIKQVDRGRKEIGALNIEEAIPLNSTDLTDS
MDPDNHSAVSFWVRQNVLKLAEEFGVHFNGSEELAEELFMKIDGKRQNPIEVVKALIPLTPKSNGSKELKRLESGNNFFS
YGTRSRGGHTIVQFNEG
>L1-19_CPa_pol#LINE/L1 2-2029 via tfasty with L1-9_CPa_pol, 3 frameshifts and 2 stopcodons. Fragment. [Carica papaya]
KVLGEVIGDCQHAFVEGRQIIDAVMAANEMVDDLFVNKRDGLVCKLDMEKAYDYGNWNFVDYLLDRMGFGSKWRKWMKTC
ITTTAFAVLINGGPxFSKATRGLRQGDPLSPLLFICVMESFNGLLSRANNLQMLKGVSVGRGGNKTDVTHLFSADDTLIF
CKPELKNLLHLRCILLCFQAVxGLKINLNKSEMARTGGGGAAGTYAEILGCREVKFPFKYSGVTLGAKYKDQSMREPVID
TYERRLAGSKRGFLSRGGRLTLIKSTLANLPIYYLSTITIPVNVAKRLESIQCRFLWGDGIDDRKYHSVNWNDIKAPLQY
GGLGIRSLVKLNEALQGKWLWRYWREENKMWRRIVEARWGVHMTSRSGGSLSLPHGRGLWRKILMQWNLFNQCLKWKLGR
GNKINFWEEDWVGEGRLLRRFPRIYNIAQSKDMTVLEAYRVVNGNTVWLINTKRNLNDWEVEEFEDLMSTLESAQVSDSD
DQVVWNLEKNGIFSVTSYYKFLHEMGTENRRLFPAKPIWKTKIPPRIAFFAWEACWEKILTLDRLKSKGRIIANGCYCCL
KAEETCNHLLLWCPTVSKLWCGIYGWLGINWVISGSVGGEIWAWDGLYVKRNIANLIPLTVFWVIWKERNRRAFDSIESS
SNRLMDRWIHLFGTIVLGHDIINDEDFGEVIDALTSL
>L1-22_ACar_pol#LINE/L1 2414-6169  [Anolis carolinensis]
MAQRIKIYSNNVNGFNSPNKRKKIWHHIKKGKYDIICLQETHISHKHVAHLTQNSLGRTYYASGPEKKRGVVTYVNNKIL
SKIAFKDQEGRILGIMIEIGGRRTLICNIYAPNGCKTNFANNLQQKILEHEYEDLILLGDFNGVLDTKLDKSSTKGITKK
KDSGKLPSRFIQLKMELGLQDIWRQRNCSERDYTFLSHRHSTWSRIDMIWGTKVITSLVNSIKILPRLHSDHAPMEMIIE
DKRNIKKEYRWRLNELLLKDISEQNRYRGLLAEYFQLNREEDTNIATIWDASKAFIRGQFIQHNIRKNRDKRLKQKELEE
AAARLEDKLKSNPKDKETAFKLETLKKQLDNQQLEEIGKKMIYVRQQNFENANKVGKWLAWKMNKKKQSHCINKIQEDNN
IYFERKEIEKQFIKYYRNLYTEDKIPKEKVTQYLGTQNIKKITENQRERLNKKIDIEEIVRAIQRLPNNKAPGPDGLSTI
YYKVFQDILSKPLQKVMNNILEGEKIPQSWENANIVLIPKKNTDNVRVANFRPISLLNVDYKIFTSILAERLKNVLAERI
HEDQCGFLPGRHQRDNIRIIMNAIEYYEKNRQREMAFLFLDAEKAFDSVNWFCILEILSEMDIGFYFKNAIKKIYSKQSA
RIIINGELSDTLEIKKGTRQGCPLSPLLFILTSEILLDAIRKNKDLKGLRTKNIIFKTRAYADDIVCLIEEPTNQIKLWL
ETIEKFGEIAGIKINREKTKILTKNISQAQREELQKKTGIEVVKKVKYLGIELTASNTQLQKNNYDKKWREVKKKMERWD
ALNLSLLGKIAAIKMKVLAEALFLFQNLPILRNKKTLSDWQKEINKFIWGRKRARIKFQYMKDDIRRGGMGVPDLQIYYD
AAVLEWVKEWAVLRKTRILALEGQDLNKGWHAYLWKRKGFKEKNFNNHYIRKALLTTWERYKHKFYRKTPLWLSPLESEH
MREIPRERWLTYKHLVREDNHGISIKPYEEVKQLEPSITWLNYWQINECFKIDNQIGFEKNDTTWDKVLKLEKKVIKVLY
QQLLIWETEEVYVKDNMIAWAREFGHTINFEDWEKCWQKKLKYTYSTAIKESWYKIFFRWYITPVKLAKFNKGKRGEECW
KCRKEKGDLFHMWWGCKKIKRFWRKIKKEMEIILQIKFTLKPEYLLLGLTDFHMDSNNEKLFIYMISAARIVIAKSWKTT
EIPSLELWTLKLMDIQNMDNLTQIISQKYHTRTKTNWNNLSRYLKEKWNLEI
>L1-21_XT_gag#LINE/L1 139-1044  [Xenopus (silurana) tropicalis]
MGKHTAKSATAKMDKYLSSSQPPPEANLERERAASPSPPIAEQAPTPQTEPTNRDLLQAITESHTSMTSQLDTIKIDISH
LRQDMQNLRERTSEVELRVSSLEDTTRPIPGELSRLNKQIADAMAKADDLENRLRRNNLRMVGLPENSEGNQPERFAEDW
LRQTLGADHFSAFLVIERAHRVPTRPLPPGANPRPLIMRFLNYRDRDAALSAARAKGQLTFNGAPISLFPDYSISVQKQR
ASFTGVKRRLRNEGLLYSVLFPAKLRIIDGPNTHFFTSPAEADRWLDSRGARGNQRVGSPRQ
>L1-13_Mad_gag#LINE/L1 540-1292  [Malus x domestica]
MGFVAYLMFNKFGEHEIEAYVRVHVLCGLSGEQVKMQGAEVVKIFGSDDEGLMQEPDIVKIRFNFHWMLKVMVGILVHDQ
GVSSVNCSSSGXIXSISNLFIFRQNEGRWIVISSINXIDSMFGDDESFIMPCXNNLVCDYKSVNFDFXDVTNDLALYLVV
DMSNVXSEEAEXRENTRNXVXAFXKAEVGSVSAGPKTGMMSPKKRVCEXDAVKXGPSGGDPRATVRMLSPRKRIRXEIAI
KEEFSYLEELD
>L1-8_SBi_pol#LINE/L1 2241-5921  [Sorghum bicolor]
MIGIIWNCRGVAKKGLGSYVKELLWDHKADFIGIQETMKKSYSEKFFRKIDNNKDFSWFWTPSNGKSGGMLSGIRKDKFD
VESFECGEYMIIANVFDKSVRKNWSLANVYGPAHDDFKDSFLTELSSFCYKAKHPILLGGDFNIMRFSSDKNKNFNDNKY
SCVFNQIINSYDLRDLPLSGGKFTWSNNRKNPTLEKLDRVLISSSWENEFPLCNLRKIPRYMSDHNPLIVRTDNSQVIGA
RPFCFETAWLRHVDFKEKVNEIWKKKVTAKSKIDAWCIKMDRVKKFLKGWGQSLKGHTRKYKNILKEELEKLEKLEEDFL
LDAENLNRKTFIQSELWRIMEEEEIYWHKRSNNNWLLKGDCNTAFFHRVANGKKRKNTIFSLNHKDQVIEGDDALVEHAT
NFYKELFGPSTSSGFYMEPGCWDSREKVNEQDNEELEKPFSELEIKDSVFSMEKNTAPGPDHIPVEFYQHCWDIIKGDLV
DLFEDFHNSKLDIGRFNYGIITLLPKVKEANNIKQYRPICLLNVVYKIFTKTLMLRLDKIMGKIINRSQSGFLKDRNIMD
GILALHEILHDTKIRKRDGLILKLDFEKAYDKLNWDFLQDCLRQRGFGSKWCDWIKLVMNSGTVSVKVNNSTGSYFKSGR
GVRQGDPLSPFLFNIAADTLAKMINLAQRNNLIKGLVSEYIENGIAVLQYADDTILCIQDDKEQASYLKLLLYLYEDMSG
LKINFTKSEVIMVSQEESKSLEFSNMFNCSVGTWPIKYLGVPVSGSRIHIADWLPICEKIMKRLDGWKGSTLSLGGRLVL
VNSCLSNLPVYAMSMFWLPKTVLERMDTARKKFFWQGGSMKKKYHLIKWIKITKPKSKGGLGIKDLRRMNISLLCKWWWK
VENGEGIWQEIVRKKYLKKGMICMLNKNPKNSPVWNDLLKVRHIYLKGRTMRVGNGKSTSFWHDKWCGLVSLADKFPELY
QINVEQKCSVEEMKRKNWRPSFRRWLHEDLQNQYRRLLDIVFRYSLNSDKDYARWDWEKSGIFSVKSTYKHLCRHDYGLN
FSRIWKAKLPLKIKIFMWLVIQNSILTKDNLGKRKWKGNKSCAFCSENESVQHLFFECSTAKYVWSLLAHSLGAVCRPNS
LEQYWTWVQNILPQAPSMHTVGLAAVVWAIWRTRNNVCFNKKKMRSPTEIVCLICSFLAYWTGLFKEDLKEQVIQGAEVV
KSTALFFHNQDMQARAHDDLQMVPFAG
>L1-8_CPa_pol#LINE/L1 145-3788 via tfasty with L1-2_CPa_pol, 4 frameshifts. [Carica papaya]
MIDKILSWNVRGLNDHKKRTIIKGCINRWKPSVICLQETKMEAINEKIIGSLWRMDNIDWNFLPAKGSAGGILIMWRKDR
VNCHGVISGEITLSCLFSNLSNGDFWYFSGVYCRGNCEERIKLGNELRHIKDSWGDRGVVGGDFNMVLKSSERSSGSTNP
KDIDDFSTLIDSLDLNDLPLMGGRWTWSNLREHSSSSRIDRFLITTNLLSVLPNLNQKILSRPTSDHFPILLASDGIQWG
PIPFRIDNKWLVLDSFRKLVADTWSNSIIKGTISYRIATKFKILKAVIKTWAKETGRKEEEGINDILVEIDDLDRKEEHS
LLSIMKREKRKNLKLMLSNKLHMEAISWKQKAREKWIKDGDRNSKYFHMLANHRRRINFVEELTIGNNRIKGNEALREGA
KIHFQNLYTEQHDHRPNLDNLSFNIISEQDKEHLEGKFTEKEILDCLRECDGDKAPGPDGFNFKFLQTFWDTIKGDIIEF
FNDFHNHSTFVRSLNSTFLVMIPKRANPENINDFRPISLIGCIYKLLSKVLAKRLSKVLDKIISECQHAFVYGRQISDAI
LIANETVDEATRHNKKGVLCKLDMEKAFDHVNWDFIDYMFQRMGFGQKWRSWIRFCITTSSFAVMVNGGPSSFFTASRGL
RQGDPLSPLLFIIVMEALHKLIEKAKELHMLKGITVGNRNKTIEISHLFFADDTLIFCQPEIRSLIFLRCILSCFQAVSG
LKINLHKSEMVILGAGDDDVGSLNATLGCRLSLLPITYLGVPLGAKHNDSKIWDPVVDMVQNRLATWKKKFLSKGGRLTL
IKSTLSNLPIYHLSVLNIPSKVAKKIETIQCNFLWGDVDNERKKYHLVSWKVKKPVSDGGLGLRSLVNLNKALLGKWIWR
YWNDKESLWKKVIDCKWFAGDQKNLSQIKKHNYGRSLWRNIMNISPAFLDCTEWIIGKGDKIQFWNDTWCGTAALKDRFP
QIYAISRFKNALVGDVVTPDSLNTWNITVMRNLQDWEIEEYEALLLCLSHIQIKNHEDKLRWKHKNSGNFTVSSFYDFLD
GRINSNQLKFPAKIIWKSGAPPRISFFAWEAAKEKILTLDNLMRRGIPIANRCYLCKMGPESCNHLLLWCPFSHKLWVMI
LGLLGLSWVMANTVFGELLAWEGLSKRNKLFKLIPLTVFWVIWKERNKRAFDGKELDFNTLKDNWFHYFGSTILEHDIDS
NVDFASIVDILIDM
>L1-9_XT_pol#LINE/L1 2411-6175  [Xenopus (silurana) tropicalis]
MIWYFGYTMSQTGFTVVSWNTRGLNDKVKRSIVLNILRKSGADIIMLQETHLIGQRIRALKRHWVPIMYHAEYSSYSRGV
AVLIRRSLGFCLEQLITDPGGRYLLVKGQVEGRPYLFVNVYLPPPADILILHEITQKVAQFGHIPTLWAGDFNMVMDPHT
DRLRPHVGDTLALAQWASALSLTDTWRWRNPDARQYSCYTRASAALSRIDLVLVTPDLLQGLTSCKFLPRVCSDHAPLLA
AFQWDRDTRSLRWRLSPKWIQHKYIAEKHPPLLAQYWDANEGTTQPNIVWDAGKAYSRGMYISLIKQARQKCEESLMKAQ
DKLTQAEAAIAEDDTDQNAHRLNECQRDVNLLYTEKYTQTELYRAAHWYDKGDKNSKLLAMLARGETPYWTIRELLLEDG
AMTTLRTEMVDRFARYYQTLYDFQPDQTNTGLAALLNTIDIPTLAEPSATELDRDISPEEVTEAINSLPGGKAPGPDGLP
SEWYKQHLEFIAPKLCSLYNEVTPNSLLPDSCYEAHITLIPKEGKPPHKCESYRPISLLNCDVKIFAKILALRLRGVIRD
LVHPDQTGFMPARATDINIRRLFNNLCVRHQNSGTRVVVALDTEKAFDTVYWPYLWEVLQRFGLGPRFVGWIRALYARPQ
AKIMVAGMLSTVIYLKRGTRQGCPLSPLLFSLAIEPLAIQIRESKEIVGLQLGDLEEKVSLYADDMLLYLADPKNSLQAL
IRVLTNFGKHSGLKVNYDKSLVFPIDNLPQSILCTITQLNTVSEFRYLGIQIHKELKRYEQLNISPVLARLREKTLVWQN
LPLSVPGKINLLKMVFLPKFLYVFHNAPVVPPKTFFKALDSVIRGFIWSGERPRMSFQTLQAPLTGGGLALPNFEKYFLA
SQLVYVHWWTVPRLDNRALVLEAAIVGSLEALAKLPYRGISPYYQTTLPINTVVESFQKALKVAQNKQPVWSKWTPIWGN
KYLLHFQTVPEIARWAAAGIKTLGDITVGGECKQFNALRAEFQLPTNMLFQYLQLKHAFQSQFPTRPLTITETTLERYLR
RPDLAKVLTYMYIVIMQTNTPQHHKVKQQWCENIPDLEEEMWKEALEQVPQITISSRDRYIQIKFLNRVYLTPQRVARIY
PGASDLCPKCPNEVGTFYHLFWECPVIKGFWREVLSYAESALALPNILSPSLCLLGILDTLQLRPPAKLCYLQLLYYAKK
ALLLHWKSTGPPSLNFWKKLINDSLPKQKLVYQARGCPDKFEAIWGTWLLANAPP
>L1-11_CPa_pol#LINE/L1 425-3482 via tfasty with L1-8_CPa_pol, 8 frameshifts and 1 stopcodon. [Carica papaya]
MVGKMLSWNVTGIRACLDRWKPTTVCLQETKLDDINARTINGIWRQDEVGWASLPANGTAGGILVMWNKSLVDCSETLVG
GTTVACKFVNLSNGVEWYFSGVYCRDSESDKETMWKELTECHVKWGNKGIIGGDFNMVLKRGERSSGHFSVSCANEFQAY
VNKFNIVDLLKGGNWTWSKQRDNPSFSRIDRFLVSSDLVLELPGLNQKVLRPTYDHFPILLDYDGIQWGPCPFRIDNKWF
KNGEFREMIANVWNSTNCRGTPSFIIATKLSRLKDEIKSWTKEVGKAEEKGINDLMTELDCLENMEGTIGLSNADRERRN
GxGHLLEAKAREKWIKEIDRNTKYFHCLANHRRRTNYVSELLVDGNKIEGNREAARSHFLNIFTEDFPARPLLNNLQFDR
LDNSANSILEAEFTESEILDCLRDCDGDKSPGPDGFNIKFFQEFWEIVKGDIMGFFKDFHNSASFVRSINSTFIVLIPKK
KNVVNLKDFRPINLISSLYKLLSKVLANRLSKVLSRIISQNQQAFVHGRQITDVILIANEVVDDVIRKKGNGLICKLDME
KAFDHVSWNFIDHMLDNLGFGRKWRSWIKMCITSPTFVVLINGGPSKFFKAARGLRQGDPLSPLLFIIVMEALNKLIDKA
SNLGLFKGITIGNQNKKTEITHLFFADDTLFFCRPDIDNLLHLRCILLCFQAISGLKINLDKSELIDLGMHSSNHILADT
SPNFAAVMGCRSSQLPIKYLGVPLGSNHKDTRSWEPIVELFQNRLAGWKSKYLSKGGRLTLIKSTLSNLPIYYLSVLTIP
KKTAKKLETIQCRFLWGDYDNSRKFHLVNWNEVKKPVAAGGLGLKSIVTLNKALHGKWIWRYFCEHNKLWKEVVDCKWFG
NNRPDLTDLDKSVFGKSLWKSIMRSLDSVLNGSNWKVGNGNTIRFWKDRWCSMESFQNRFPHIYVIAKNRNSLIRNVYED
NYWNVEVTRNLQDWEVQEYESLLQLLATINLNSSENCLYWKANRNGAFSVKSFYKLLVDG
>L1-10_GM_pol#LINE/L1 2022-5696  [Glycine max]
MNILSFNSRGLGSGVKWSAIRKLTLTNNLDVLCIQETKMESVDRKLCQYLWADCNVSSECAPSTNAAGGLLCIWNNDSFS
VDRKVVGRGFILLEGMWIKDNKRVSIINVYAPCDLQRKRQQWDEILQLKTSSQAGLWCVLGDFNSIRHQDERVSSAQSVG
ADPSISEFNSWISDMALEEVRSVGRRFTWCRPNGSAMSRLDRFLLSDEWLLQWPDSTQFVLDRDFSDHCPILLKSKNIDW
GPKPFKVMDWWLKDKGFQQLVEQQWGNYHPPGWGGFVLNHKIKLLKQCIKQWSLSNGEANARKVLNIKKELNALENGLND
RPLSQEEVTLKKSLQVQLWDAAYAYESMLRQKARVKWLKEGDSNSTYFHRLINHRRRKNAIQGIFIDGVWVHEPCSVKNA
AVLYFKDRFSEECSSRPTLDGVQFSSLDLRDKESLVXRFSEVEIKSAVWDCGGDKSPGPDGLNFNFIKHFWEILKPDFMR
FMDEFYINGSFPKGTNASFIALIPKINDPQSFNDYRPISLIGCVYKIVAKVLAKRLALVLPHLIDERQTAFMKGRHILHG
VLIANEAIAEAKSRNKPCMVFKADFEKAYDSVSWGFLDYMLMRMGFCERWRKWINGCLSTATISILINGSPSKEFAPKRG
LRQGDPLAPFLFNIVVEGLTGLMRSAVSKNLFSSYQVGTLKEEVNILQYADDTLFFGDATKHNVRTLKCVLRCFEEASGL
KINYSKSHFGCLGKSGSWCREAAQFLNCSHMDFPFSYLGIPVGVSSKSWIVWQPIIRKFEAKLAKWKQRSLSMGGRITLI
NSVLSALPIYLLSFFKIPKKVVQKIVSIQRNFLWGGHQEASKIPWVKWDTVCLPKNKGGLGIKDLSIFNEALLGKWGWEL
ANNQNQPWARILISKYGGWKELISGGKSNFTSQWWQDLKAIFQQQHNDRFVDNLKWRVGCGSKISFWKDKWLEDNCNLQG
KYPTLYLISKQQTSSINSMGDFVEERWEWKLTWRRDFFDHEIHMAADFLAEIDSVHINQSSRDFLCWKPDPNGIYSTKSA
YKVLQEAHDNASEDSVLKIMWSLKIPPRASAFSWRLFKNRLPTRDNLRRRQVALPSYSCPLCDXEEESVNHLMFNCAKTR
SLWWEPMRWVNRVGPLPIDPKNHFLQFSQWNSKASTDKRWEFLWIALSLSIWHHRNGMVFKNQPFTPEKVMDEALFHTWS
WLKCVEKGFXMHFNFWSTNLKEAFS
>L1-23_XT_pol#LINE/L1 1-3010 via tfasty with L1-10_DR_pol, 6 frameshifts and 3 stopcodons. [Xenopus (silurana) tropicalis]
ISDHAPLLTNWENLKTNTHRRWSLNPIWLDILDIDEQLGNTIGEFFEENANTASPLVVWDTFKAYMRGIFHTEINMVKRN
SAREQDELANQVRLAEIKASHNPSHQNLTALKIAQQTMLITxHxNEQGERAGKLLAYLAKQHSSPPVITELVDSEGTHHT
KPEAITSLLTSFYNEIYQSKISNTERDTGEFLNNLALPRLPEDYKKQLDKDITLTELYEAIDSFPTRKATGPDGLPIEFY
KRFKGCFKEVLGPHLLKTLLCAKEEGVLPPSMYEATIVLLNKPGKNPTQMDAYRPISLLSADIKILAKVLSARMNNVLST
IISEDQTGFMPGKSTALNIRRLYLNLATKHDNQGQRSIAALDIAKAFDTVEWPYMWQVLARFNFGINYIKWVQLMYNSPK
ASLIVNGMQSNKFPLERGTRQGCPMSPLLFALAIEPFAQAIRQHTGIQGWRIGDREERIQLYADDTLVYLGDWTESPQNL
FSLTEKFAQISGLVTSPTKSITFLVDPLPDHQAPPEFPFPLENQFTYLGIKVKLPLTDFYELNVNPLMGKTLAKVKAWES
LTLGPMGRIHLIKMILLPKLTYVLLQAPLQIAKSFFVTKLEVIFRQIIWAKSRPRLSLITLTKDKDKGGVALPNIYLYYL
VAQMSHFATWVEEAHHQTLFHMQALLVGNKCTPFQWLSIKKPSNTVYQNVVMQHAxLIWTKATQILKFTGFLPQTLLWCN
YWFPHVAKLGEMPIWMNRGRDGKMGQWLLKWFQLPSNQWLQYMQIQKKISLQNNKAIIQISQNSTVDLIMRGSTKGLISS
LYANLHSKVFNKPLEILRGKWETDLGTLDDDGWDEVLESPLTASLNYRDRMIQYILYTEYYTPAKLHQIFPNTTSECPRC
HVENATLMHMVWECSVLGKYWTKVLNKLDLILEVKLPRTPLVCLLGIGLKELLTQHLSVFTRDMFIFSKKKAITRKWKDS
TPPKYSHWLSEVKHLCTLESLIYKTRGAPKKHEKIWGKWLEKST
>L1-43_XT_gag#LINE/L1 1-1125  [Xenopus (silurana) tropicalis]
MGKRKQREQKSTLSPYLHKSGSMGSRDEIQDGASQTSASSASPQIGLATSPQREDITMADARLSPGQCTSQTTETSSSTD
EAPVTSRILQEQLAQLQAQLNSTIAQSIATAITAAIRDIQRDITDLGERTDKLETYTDDMAQRLINLEQENTDLREEMTQ
LKDSCEDLENRSRRQNLRFRGIPEEVTTPEIPKYLVELFTHICPDTPQEQWKMDRAHRSLATKPPPTKPPRDIIVRFHYY
ESKEALLTKTRTINSLEFHNHKIQIYSDLSPVTLAKRRELRPVTQILRDCKIPYRWGFPFKLIINHRGQTHTLIHPRNGH
KLLAALGIKTRDTRKTIETSSTTTTLSPQWTRVPGSPRPPGLALSPSPLRGDESP
>L1-42_XT_gag#LINE/L1 142-1281  [Xenopus (silurana) tropicalis]
MGKRRPKEQLGTMSPYLHKSQAQQQRAQDGADESDQEAPPDSSPASSPGHTDSALTHLQQQPGETISHSINTADLVTVQV
LSQQLADLHEKLTSSITDTIHLALKDIQADISNLGERTDQLETNMDELIVRYNQVEQENSSLWEELAALKSHTEDLENRS
RRQNLRIRGVPEEITPQDIRTYLRSLFSNINPDLPVEAWRFDRAHRALGARPANINSPRDIIVCFHYFESKESIISKTRN
IQHVDHQGHRVQIFHDISPITLNKRRELRPVTQKLREHNISYRWGFPFKLIATKGNRQYILQDPSQGPKLLQDLGLAPLD
PKLLPLNRKRQPPDHLTPIWEKVKPGHPNQIPHHKPPDHIPSSTKAYYIIPLLMEEPREL
>L1-46_XT_gag#LINE/L1 9-1082  [Xenopus (silurana) tropicalis]
MGKKRIRDSTCTISPFLQKPAASDKLRRIQDGGGEQEPDFSSATSSPSQPQTPERHSEASPHHSEGTDHTDSQTVTTDIL
IKQLADLRDSLSAAITESVKAAVQEIRADIFSLGQRVDHLETVSDNIIVRHNTLEDDLLTMKEEVTSLKAHCEDLENRNR
RQNLRIRGIPENVQPKDLRQYLRTLFSTLCPELPAEAWRFDRAHRALGPRRPTQQTPRDVILCCHYFESKEQVLAHTRML
PHVDFQGTKLQIYNDISPITLAKRRELKQVTQHLRAHNISYRWGFPFKLIATSNGQQHTLMDPQQAKRFLLAIGLPPIPQ
TEPEIQKSPSRLTTEWERVGPNPPRSPRRPSPTPGPPT
>L1-BT_gag#LINE/L1 3225-4148 [Bos taurus]
MKRQRNTQQIKEQDKCPPNQTKEEEIGNLPDKEFRIMIVKLIQNLETKMESQINSLETRIEKMQERFNKDLEEIKKSQYI
MNNAISEIKNTLEATNSRITEAEDRISELEDRMVEINESERIKEKRIKRNEDNLRDLQDNIKRYNIRIIGVPEEEDKKKD
HEKILEEIIVENFPKMGKEIITQVQETQRVPNRINPRRNTPRHILIKLTTIKHKEQILKAAREKQQITHKGIPIRITADL
SIETLQARREWQDILKMMKENNLQPRLLYPARISFKYEGEIKSFSDKQKLREFCTTKPALQQILKDIL
>L1-50A_XT_gag#LINE/L1 147-1286 L1-50_XT_gag 87% identical [Xenopus (silurana) tropicalis]
MMGKRKPNEQRTTMSPYLHKTPGRKRAESQDGGDSVTLETLPELQPSPHSPASLYSEDDPAVQPGTGQSLEGDTLYMSPN
TPDNSPVTAQTLAHQLSLLKEGLTATLSKAVSDAVASAIKDIHKEIRELGDRTDKLEYLTDEVIQRHANLEDESMALREE
ISQLKNTCEDLENRSRRQNLRIRGVPEELEAAEIPQYLKGLFTKICPDCPPDKWEFDRAHRSLGPRPPPTKPPRDIVVCF
HYYIQKEAVLTNARTKSTLEYLNHKLQIFADLSPTTLAKRREFRPLTQLLRDNNIPYRWGYPFRLIVQHRGQSYTLHSLE
RRQQLLQALGLTGSKQNSPLKQPTSKGRMSPQWHKVPETHPPQRLTPSPTAPPGSLAQIT
>L1-39_XT_pol#LINE/L1 1516-5352  [Xenopus (silurana) tropicalis]
MVNVIDVNKYTYHNLVMDNTVKVISLNVNGLNIPEKRRQIVNVMRKGKGDIILLQETHFKNTPQPMHKLGTFSQWYYSNN
PDQKTKGVAIAIRKNLNFQLENTLSDPNGRYLFIKGQLYHTPCTIGCVYFPNKNQIPFLNKLKEKITDFANGLCIIGGDL
NFPVDPQNDTSKGSSVLPLSKLKIASKSLQSLRLIDTWRFHNPTTKQYTHYSSTQNSYARIDYVFISQHHLHWLKEASID
NILWSDHAAVQIKLNIPNKTPSTWQWRLNESLLEDLDCRKEIIDTIKDYKQNTQTDGTSHLTKWQALKCVLRGILIKHGT
RIKKDRQKKTTQLIREIGKLEIQHQQNLSLDTYRLLTEKRRELKQLSNSATKYAMTRLRQKYYEYGNKTGKLLARALRQK
QQDSYIHKVKNEEGIMQLLPNRIAEAFRHYYKNLYNIPQHPNQIKLEHKIQTYLNENALPRIEKHILQELESPIQLHEVI
EVIKNLKLQKAPGPDGYSGKFYKNLLEYLAPMLTNCFNEIGPEKPLNEEFLLAYISVIPKPGKDLTNCSSYRPISLLNLD
LKIYTKILATRLNPILPEWIHRDQTGFVRGREGKENTMKIINMMCWAKEHRTHSLLLSTDAEKAFDRVHWTFLKKVLENS
GMGTRFINKIMALYTIPRAQIKINGILSEPFTIRNGTRQGCPLSPLLYVLCMEHLLIALRQNPDITGLTIKGEPLKIAAF
ADDLLLFLTKPLISLPIAMKELKNYGDLSNYKINMTKSEALPVVLPGKLLTQLKNNFKFHWQTEKIQYLGVHIPTDLHKI
YEHNHKPLLSNLSTQLQSWNHNHFTWTGRINIIKMSILPKLLYLFQTLPITLPKSFFHQTEHMVSQFIWTKKKARLKKTI
LYKPKEKGGLGLPDFFSYYQASIVSKLVEHTYTANDKQWIKIENQWAGHPLANVVWNKEKKKELHIGQNSQIQALTETWK
NLNKEYNLIPFPSPLIPLGDNLDFPPGIMDKGMNNAFGIQNLQLQHVLATATEPPAIMINKDTWTKKDSWRYLQIKNFLK
ELHNLQQPLRPLTDLERLCNRNTSPKHLISTVYKIIIQSKYANLPHFTRTWAQELQIDLVEEEWERIFRTVAKCSISNKF
QENSYKILSYWYRTPTQLYKMRLIQNDKCWRCNGESGTISHIWYTCPKVKTFWEQIEQISSEILGCQIRFSPQMILLLHT
DKAEKIFKKSLLMQLILAAKILIPRKWRNDDPPTVEEWLSSVNEIYLMEEITSSLSPRPQKFIEIWQPWVSYLNTHDKL
>L1-27_XT_pol#LINE/L1 1442-5251 via tfasty with L1-1_XT_pol, 2 frameshifts and 1 stopcodon. [Xenopus (silurana) tropicalis]
MPQGNNKETVQALRILGWNVRGLNDKIKRATVFNFLKRYTPDVICFQETHITGSKTLALRRPWVGWAYHATYSQYSRGVT
ILIRKSVQFQMLAIQHDPQGRYIFLNCIINSHPLLLLNVYIPPPYHPDVIRKGAVFMLQYPNTPALWLGDFNNTWDTNLD
KLPQQMPPQGVAPHHKXTSFAKLASEIGLHDIWRLHNPGQCQYTCHSATYKTLSRLDYALANHLALALAPQAEHLPRGIS
DHSPILITLTWYENKPLPFWKFNAYWLNLFPEIETQENEWSIFLDAQTPDTDPLLLWETFKAHLRGSLIAQVTAIKRTTT
ATELHISSQVTQAEATHTQTPTPHNYEQLKLREREYNNYLQVKAKRKLFFAKQNFLEHGDRTGTLLAKIAKANGTPPVIT
QIQDETGQILTNPQQINARFQRYYQQLYSTNSPFSQTETQSFLSEIHIPKFTSAHRAILNAPITLEEVKTAISLLPNRKT
PGLDGLPSEIYKRHVDYLAPKLLETYNTAKMQGTLPPSMAEALIILIPKPGKDILDCSSYRPISLLNTDVKVLAKILAKR
LSLVIHKIIHPDQTGFMPGKSTALNIRRVYEIIQAHQVNAKDEALVSLDAAKAFDSVEWKFLWAVLEQIGSGTEFVQWVK
LLYCSPKARIATSGWTSEPFLLSRGTRQGCPLSPLLYALAIEPLAVKIRADNQIEGLRVAEYTDKIGLYADDMILFLKDT
THSLNRALTIIEEMGQYSGLRINWTKSNIFSLKGTENTDPPLDHPLIVVNTFKYLGINITRNPGDYLQENIHPLIKYVRD
KTRTWGNLPLTIAGRVNLVKMTLLPKILYILxFMHSPIFLAQKLFQIITSHILTLVWKGTRPRLKLALLRNPTTAGGLAL
PHFHLYYISSQLTQISHWFHTQSQHSAKRMGFTGPVPTRDRIYHLLKGYSGCPTPRQTNTLMIQALRIWDKANKLVPHKT
GVIEHYTPIWENRSLPECCTMQDTVLWKEKGIWCLGQVLDHNTIKSFEQLKQEYNLPNHYLFRYLQLRHALSTQYPSGYP
TLETQPYLTAIQAGYTKGMISKLYSILLNPNTIVHTNRSKTAWQDNTGRIDQEEWEEALESPKYASPYTRERTIQTYILH
RAYLTPLTLKHFRQNTDTTCPRCHSDNPHFYHLIWTCPILIDYWKQITQFIHDVMGSPVPLDPKVCLLAILEHLYPNTYK
RTAITELLHIAHKHITSKWLSTESPTLNGWRTLVNQALPYREITYKNRGHPDKYDKVWGPWLENPRTTTH
>L1-25_ACar#LINE/L1 8-1094 via tfasty with L1-23_ACar_gag, 2 frameshifts. [Anolis carolinensis]
MAYRLRSEKDTKDPRAMQKRASFSEESQVKEMTEMILKELHRMQEKQDAYQKLAQEQMAEFKKEIKNELKGMKQEIGSLS
QELKELKSDKAELRNSHGKLQREVQILEQKSNKIEAKQELMEAKELEYQLRLRNVWEEPRENIRMVVVEIVANLPQSPKE
EIEGRIDRVYRINTHYAKRNKTPRDVIVNFTKKIYRDEILKLNNENSVTFKEKKVIILKEFPMDTINRRRKYLFLVDELK
RHNLRFRWEKTEGLMTTYRGEKHWITSEGKAQNFYKKIKKEMEEEEETDHADRTMRGKPGRKKYTTPQGRQEVDREQQPR
EEQPIGDDKTEEEGESEEEAEESSINPSEEEGKDPKEKEEDRV
>L1-28_ACar_pol#LINE/L1 2-3478  [Anolis carolinensis]
GVMIDVEGRKVLICNIYAPNGSKEKFVEELYQKILEQEYDDLLLMGDFNGVISNKLDKSDHGKAKRGKVAGELSKKFKQL
KEELGLVDIWRHQHEEERDYTFFSSRHLSWSRIDMIWGSKTITNQVNKIKIMPRVNSDHAPIEMTIESRGMREKEFRWKL
SDLLLKKASDQERYREKIGEYFKLNKEEDTPIEIIWDASKAYVRGLMIQHSARMKRSRQSRLNKILGEMARLEANLKVKP
RDKETKLRLDVAKKELEALQVEEMGKRLKYIKQHYFENANRVGKWLSRRLAKRRQVNTINKIQEGGKSYYNNKDIEKQFT
KYYEKLYSEDKIPKEKVTQYLGKQNIPKITENQREIMNRKVTSEEISRAIKRLPSNKAPGPDGFTMLYYKIFQETLTIPL
QQVMNKILEDGKMPATWKNANITLLPKDKVDTTNVKGYRPISLLNVDYKIFTSILAARLKEVLKDRIKEEQAGFLPGRHM
KDNIRNILNAIEYYDKNPQKELAFLFLDAEKAFDNVNWFCIIEILREMDAGYFFINAVKTIYSQQTARIITNGQLSSEIT
IRKGTRQGCPLSPLLFIMTLEILLEAIRRNKDLQGLRVRNHSYKIRAFADDLVCLIENPLEQFDLWWATILNFGEVAGLK
INREKTKILTKNMPQEKRERLQKETGIEIAKKIKYLGIELTASNAQLQKNNYDKKWRELKDKMKRWSSLKLSLLGKIAAV
KMKILPEVLFLFQNIPILRNKRIIKNWQKEISKFIWEGKKARIAVKYLKDDVRRGGLGLPDLLLYYEAASLSWVKDWASL
REKKMLDLEGHDLNKGWHSYLWREKTKKEKNFKHHYIRAALIQTWDKFRKRFYTKVPMWFSPLEAEHKRELPREKWLTYR
ELLXVGYQGTSLKRYEEVKQLEPSITWLNYWQIKESFREDEKIGFENKDTCWDRMMKMEKKIMKILYRQLLTWETEEEQV
KEVMTKWARELGRTINMSEWERIWNRNLKYTYAVELKENWYKIFYRWYLTPDKLARMSKGKGDGKCWKCGEHXGDFMHMW
WRCKKVKNFWQIIHREMEKILKKKFERKPEYLLLGITDFPMDQNMEKLFTYMTTAARICLAKLWKKQEVPSRENWILRLM
DIKNMDTLTQFIKQDEVTRHETDWSLLRGYMNSESMINE
>L1-34_XT_pol#LINE/L1 394-4170  [Xenopus (silurana) tropicalis]
MAEIKIGSMNARGLNTPLKRYNLLKEMRRLKLQVMLVQETHFKKTKVPTLRFKGFSTVYISTPYISKSRGTMILLADTLG
FTLIESKTDTAGRFNIIKGLINNTKYTIASVYLPPTEQHSALSATLQALSEIEEGTLIVGGDLNVALEPILDTSTGHSSM
PYKKIESLKKMLRTHTLIDTWRLTNPTSRNYSFYSPVHNVYSRIDYIFIRHTDIALLKEADIDVISWSDHAPITCTLINK
TPSLKRSTWRLNDSLLRDQQIKQDIIHKVKQYFTENNTDNINPWTLWLAHKCVIRGELIKIGSRLKAERNAKVQQLLTKI
RTLETQHKLSKLAHVLESLTEARKELRDTYSSYLARAIEINKKLFFEHGNKCGRLRNHITQLKTPTGQMVTTTKDIAETF
RQYYIKLYQLPTNTQRPHDRHHACRDYIHKTNIPKLSTEQQALLDTPITKEEILLAIKSSKSGKAPGPDGFTIAYYKELG
EHLTIHLTSAINSISNGNEIPQEALEAHISLIPKKGKDPSDPGSFRPISLLNVDTKLYTKVLATRMNQILPELIFPEQVG
FVPGREARDNTNRLFSIIQHSKKSNTPIMLLSTDAEKAFDRVDWTFLKATLQEINLGPQMIKRISALYTLPTAKLRVNGE
LSETFHIKNGTRQGCPLSPLLFVLSIESFLRKIRDNPNISGVKIGTREHKTAAYADDLLFFIRNPRITLPNLLLELQEFQ
KISHFKVNLTKSVALNISLPQIDFNDIMQNFPIKPSHSHLTYLGIKIFSELKQTIDRNYTDLINAFKVDLHTWAKPTISW
VGRINVLKMNILPRFLYLSQTIPYPPPQKTFQNLNNLTNKFVWANKNPRIARIKLSATKNSGGLGLPNWEAYHKSAILNR
CLDWSFHRHTKLWIRIEQESLVTPLWASLWLPNTKREYKDKSDSKLKYTLNIWDTLTNTGKWQNTPTPLTPVFGNPDFPP
GLDLDNFKGWKLQLHSGANYFYTGQQIKSIEELIPNRTITDLDRFRYRQIRHFLYSLAPTQSPRPDLTEIEQIWNQQKTP
TKTISLLYKCLLNLTPNPSDSFKNKWETDLNINIDQEQWDKITQINHSTSPCTKIQELNYKIYTKWYRYPSKLAKIYPTV
PPTCWRCKNGIGTLTHIFWSCPLLKPYWDTIRDTIKLITDTDIPNTPLTLLLHDTPLPYSAYKNSLVPIMLDAAKLLIPI
KWRQTEPPKIKDWLYKLSEIYRFEEMKSTSEKESRKFTQKWFYWNQFKHSEQYLELAAA
>L1-28_XT_pol#LINE/L1 1687-5439  [Xenopus (silurana) tropicalis]
MTGLTILSWNTRGLNSKFKRAIILNHIHKLRPDVTLLQETHLTGQKLLALKRHWVGHAYHAPYSTYSRGVSILIKKSVPF
ELLTIQSDFYGRYIIVHCKIQNQPLILVNVYIPPPFSINLLEQITQKIMTLPTDPLSIIGDFNCTVNPLVDRLTGTDPSA
PQLQGWMAALALIDLWRNKHPIDQQYTCHSASHNTLSRIDLALGTVNFAQLLQDVQILPRIHSDHSPLLLKISWGFTTQH
KLWRLSPLWLKNNMVAEQCTAEYDQYWDINKDSANNNIVWDASKAVARGSLISTIKGVRKTYKEEMKQKEQKYQEAQEEF
INNKSDETHSKLVTAQRELDLQHVTLTRKKLLYQNQKSFETGDKNGKTLAYFSKITEATTVVSAIKGGKGNLITDPQEIA
SIFAEYFKEIYTQKNSAPQNNMKEYLDNIPNPKLTRQQRLSMDSPITPQEIEAVISGLPTNKTPGPDGLPAAWYKLLGKQ
ITPLLTKVFNEALITHSLPDTFYDAIITLIHKQGKDPTNCDSYRPISLINTDAKILAKVLANRLLKVVPELIHIDQCGFM
PHKTTSINLRRVFTHVQNAKRMQGGGLLASLDITKAFDTVNWDFLWAVLAKFGIGPNYITWIQLLYQKPNARIRVNTILS
DKIELHNGTRQGCPMSPLLFALVIEPLAIAIRIDPVIKGFQVGQIEEKIALYADDLILFLADHNNSLTQALKTLDIYSNY
SGLKINRQKCHLLALSGPEQEGTLQGLKWVRQFRYLGIEVTRDLSKYYDKNLEPILTKFKNDVVHWVKLPLTLWGRINLF
KMIYLPKFIYPLHNSPVYITNKFFNQVNKVLGSFIWANKAPRVGWRTLTAPYQLGGLALPNMQLYYIASQLTYLHNWFNP
DPDNPLTALHGNLIGSLEALRNAPYRKKRDITPLPEVLTTPMTAWAKLVKQNRKNIKGHSLQMPLWNNTNLQHFKELPDF
QYWPANGVKWLSDVVIDGNFAQFNTLKEKLEKPNLQFFRYLQLRHVFKAQFGSLTIDTGSTPWEIRLWDPGGKKLLSQLY
KVILKVTPSPFDKAKTKWDKILPQLNEEQWEEATDHIYDFLIATRDRVIQFKFYHQVYITPTRLRTMGRSPNAECPKCHN
VNAGFIHMVWDCIHIANYWSGIMQYLNEQLILPRVKTPEVCLLGLIDELVPQNQPRNLMRATLFYAKKLIIMKWMSPIAP
TIAEWVAMINKTVPLIKLTYLARGTPQKFDRIWTPWLDANPELTIPGTPPQ
>Penelope1_CI_pol#LINE/Penelope 1237-3182 via tfasty with Poseidon_Ac, 1 frameshift. [Ciona intestinalis]
MAWQIESSTGETLSNKDWVMNMSDKELTPAQSVLSLGLNFAVSPDNVPWKQIVASIEKGLVGQPLHIKSLLQSKLVGCIR
SHKTATTNVPKSYLAAIRELQKDRSIVILSADKGNRAVVMNRTDYTAKLLELLKDARTYKKLARNPTPSLERKVNNYVRR
LHREREVLSYSEFRQLHCTDGRTPQLYGLPKVHKPGIPLRPIVSFIGSPSYMLAKFLAKIVVPLIGNNSHHVRNSHEFAA
EVTEMTIADGECLVSFDVVSLFTNVPIPLAMSDAVTRLRTDHLEDRTVLSCEDIEEGLRLCLNATCFAFQGAFYQQVFGT
AMGGSPISVVIANVVMETIEEXALATFMHPPRYWKRYVDDTFAIIGAEQLHPFLDHINGIEESIQFTLERENEGRIAFLD
VEVSRDEEGGIKTNVYRKPTHTNRYLSFWSAHPIEHKKAVVRSLKHRAEALVSDPLRLQDEMXFIKDGLRYNSYPPWMVK
WKPTQKPKEITPTIATVSLPYVPXLSDTLKRMLTDHGIKVYPKPHTTLRSLLSHPVENQATEPKGVVYLIPCGDCEGVYI
VETGRALKTRLKEHRRDVAAKDASKTALSKHSAVCNHRVAFENVRILERETDLTKXLFLETPLHIHKHRECVNNKEQCTY
FPTVYNNLI
>Copia-4_SCH#LTR/Copia 23-4873 R [Schizophyllum commune]
MSKRDSDGRPILTRFNWSWWDSEIQPWLSSKGLWRYAKGTVTKPKPKDASAVTDAEYRTQEEYEQRLEKAAGELWLAMEE
PLRPQFKDKRSTPKDLYDAMKTAFNIQEAGTRFAALSDFFDVDLGDNTEATTALTDLLSRVDEAMTRVQSLRPSTGYDLA
TMDLELKAMVTMRALAASPNPQHANMYTSLLLDKALTYETVKDMIAREFASHRMTADGTPLAANRAGYTPECYNCKGPHL
IRDCPKFKPDWKKEEEAAAAASTSKRQQKKKNKGGANASGASSAPSSGPSEASSSTPSTSAAAARVESAGQASAFTSSPA
LKEWLQSKAAANFNTDTGASLHMTPRRDWFVTYSLHRVPVRLANGAIVYSAGIGSVEYQPVEGEKLLTPIVFFDVLHVPL
LTSNLLSIYHLTAHKGYEVSIKDKHVAFYRAGALVCTATVDDSNTGYLDGYVVVPPAHSAQRAASTTLPLDAALWHRRFA
HVNHGDIAKLRQRKLVRGMRFDSREAPDPICEPCIMGKQTRKVVPRGPGERATRPLELVHTDLKGPMPVASREGANLYWI
TFIDDKTRRRWVAYLKRKSDAWAAIQQFKAAAEVESGQRLEVLRCDGGGEYISNVMKDAALKEGWRLEITEPDEPHQNGV
AERANLTLANGASSMLYEAKLPPSFWAYAIAAYNHVANRAPTSALPGDTTPHIAWTGKTPDVGYFRVFGCLAYVLVKDKH
RRALEPHSQKCIFLGYPPGTKAWLFYNPATKKTVISSHAVFDERYMPGTSLKSLNLITAEIIDRGEGPPDFGDVADQGGD
VPSPPSHRHSADDDDVVSYDDQPPPPSGQPAPAGPQLQTPPPTSPPRAPTTPEQPSTPLQQPAGPTTPPSARPPPPSAPR
PPRTAPPSKAALRGRQERAQEQQPAPRAERSPSPAWQTVRPSTSSGPPPSRLPRATKPTHSLSERELTTRAWQKQPAPPS
TGRATPSTPAPQPQVTSPNRFAPLSGQIEEVDEEEEEQEEQSAQEERREQAQDEEAQDRERARKEMMDWAGSDDELALTD
STPIPGAHVMQAGLDYVFSGITEEDWSVEQALNFALSTTVASDAQQGEPKTFAEALLRPDKAKWIEAAFDEVQALVDNGT
FEVVELPPGKRAIGSRWVFKVKRNADGSIERYKARCVAQGFSQRPGFEYTETFAPTPKWAAIRAILALAAMDDLVLYSID
ISNAFLNGDLAEEIYMRQPPGFKLGIDPDKDYVWRLKKSLYGLKQASHVWHETLNRVLVEMGFTRILCDHSVWVYGRGDA
RILVPVFVDDMTIGCKTDAQALGIIGELKKHFKLRDLGPTTWLLGVAIERERSQRTLSLSQRQYATDVLERFGMAECSPV
TTPLNPSHKLSAADAPVTPEDIEFMSTRAKEYASAVGAIAWLALATRPDLAYPVSVLARFTGNPGRPHWNALKHLFRYLK
GTLDYKLTYDGKTVNARSELFYTYTDADHGGNPDNGRSTSGQIVMMAGGAVSWSSKLQTIVALSTTEAEYVAACSAGQEI
LWMRNFLTECGYSVKSAPSTLYIDNNSALQVAKNPEHHGRMKHLDLRFYWLRDEVHRGSIRLVHLQTADMPADMMTKALG
RVKLQHMATLSGLGVGR
>Copia-3_CQ#LTR/Copia 19-4165 via tfasty with Retrofit2, 2 frameshifts and 2 stopcodons. [Culex quinquefasciatus]
MEADKVGLPQFDGTHFAIWKFRVELLLEEKELSDHIEKEPTASNLALAEWKLKDVKARNLIVKCLTNDYVDSVRGKTTAR
QMWKTLLEAHAKTGTVSEMFLRKKLLALKYVDGESMEKHLASFDSIVTDLRAAGADVKTPEAITYLLETLPRSYDNVATA
LMTIDPETLTVAKVKANLLNEYVKQKERSGTGQEETKPAVFLGKVDRRRKPFPGQCWRCKQTGHKSFECQAPEEGAGSSR
ESGGEVAVRLPTKKKAFQLRRPDAEEGEESVPRGGFAFMTKTTELKRKGGSEVTWIIDSGCTDHMVNDSSLFLAEQTLRN
SYPVSLAEEGQAIAATKVGFISAMSYVQGKEYLCEVSDVLYAPGLRHNLLSVSRLEKAGFSVVFRNGVVELLDGNTIFAV
GKRTQDLYELSFTLNRVEANSIQANVDRNILWHRRLAHLGMKSVRDLARRQMAKGIDSSITDSTELCEACIMGKHSRPPF
RSRESRASRPLERVHTDVCGPITPATWDGKRYFVTFIDDCTHFTVIYLIASRDEVLPRFKEYKAMVEAGFDLPLSKLRCD
NGGEYVSNEFKSFCRDSGVVVEYTMAYTPEQNGEAERMNRTIVEKGRAMIYDSGLPKEMWGEAVMCALYVTNRSPTRALK
ADVTPAEEWYGEKPDLSALRVFGCKAYAHIPKHKRGKFDPKSRECIMIGYDTNGYRLWDPVNRKLLLSRDVIFKEDEFPA
IENPCERGSELRVTSADRFVSEDRVTSADRFVSEDRVMSADGFISDDRAEEVGGVTGVDGGPTAEEPVPEVEEEVSAVSD
DEFFDSENPEQEERVQEAEVVLVEQEVSTVSAGGEEVNNEQDPLLVRKERSRRPPLWHQDYDMESSALLAEGNPDDVPVS
YADIEGRSDETCWRRAIEEELSSLKINDTWDIVPNSAGKKVISAKWVFKRKLDKDGNPDRYKARLVARGFLQTHGVDYQE
TYAPVAKLATIRFLLAIGIQRGYHFCHMDVVTAFLHGNLEQPVYMKAPDGVEAANGSVLKLKRSLYGLKQSPKCWNDRFH
YYVISIGFVQSKADYCLYVKEDAAGLLYLLLYVDDLMFAKxSESHETEGVLSTESHERLGCVEHFMGMRIAIDRDRGRVT
ISQDVFAESILERFGMQSCNSVTTPIEPSTKLRRPEGATNTDTRYRELIGSLMYLMLGSRPDLCFAVSYFSRFQDCAGEQ
HFNHLKRVLRYLRGTSAYELVYSRNPDAAPITGYVDSDWANDLDDRRSTSGFLFQVYGNIVSWATxKQGVVAQSTTEAGY
IAAANAVSEALWFKKMFADILEPIRHPIPIQEDNQGCLFVARNPETKRTKHVDVKYHLVREKVCNKEVVLEYVPSEQQAA
DILTKPLHEERRKSGMSWDGKRR
>Copia-5_CQ#LTR/Copia 50-3545 via tfasty with Copia3_XT, 1 frameshift. About 150 AA missing at C terminal end. [Culex quinquefasciatus]
MTDAKPAPVQVPMLDESNFNPWRLRMLAFLEEHELLECVRTSVGDVAELKERAGEKPEEKTARMKLLDKRIRKDRHCRSQ
LMARISDAQMDHLEEDMSPKDIWDKLHNIHARKSVASRMRIQRQIVTMRYDGGKLQQHFLQFEKLIREYRSAVAKLEEID
VICHLFISLGSAFSGAVTALETMSQEDLKLDFVKNRLLDEETKKGIESPTPSQSDTAFHGAKPQKKQKCFGCNKEGHRVA
DCPEKKKPQQSKRKQKSKANVADSGSNRKEVCFVSEANPQQARTRWFIDSGATDHLVRDKELFCELHRLKKPIEIAVAKD
GETIQAEHSGTVKVVAVVDGKRVNCTIKDALYVPKLRCNLFSVLRVEQAGMRVVFEDGKATVYSGSEIVACATVQNKLYE
MNFLARHGTEDSSLLTCGRVRKGFVLWHRRFGHLNEQSLKCLVQKEMVSGLDLSTAGTDDTIVCESCVVGKQTRKPHPPR
EGRRSSRVLELVHTDVCGPVSPEGLDGMKYFVTFIDDWTHFVMVYLIRSKDEVMECFEEYEALVTAKFERPISRLKCDNG
GEYRNKRFEGFCKKKGIRMEPTVPYTPEMNPLSERMNRTLVEKARAMLADAGVDKKFWGEAMLTAAYLTNRSPTAALEMK
KTPYELWESKKPDVSNIRVFGSDVFVHVPKELRRKLDDKAWKGTLVGYSHNGYRVWDPKKRTVVTARDVDFVESVVEQQQ
VAQPNSQFVPLESDEESCVDDASCADDGDETSEDEFSSAADEPEAEEADGSGRPQRPKNPPAWHKDFEVEYASFALNAMN
FIEDIPSSVPELKKRDDWHEWRAAMQDEMNSMKRNNAWTLVKLPAGRKTVTCKWVFKVKRGDAEKPDRFKARLVARGFTQ
KPRFDYTETYSPVAKLDTLRAVLALANENRMFVHQMELKTAFLNGELAEEIYMTQPEEFQQGNGLVCKLNRSIYGLKQAS
RAWNDRFHGVISKLGFVRSANDMCLYTRGAGDKKLILVLYVDDILLAGTSLKVLEAVKQKLTEEFEMTDEGEIKQFLGMR
FERDKLKGVLKISQRDYFDGLLKRFRMDDCKPISTPMEHRLRLVKGEEKQRTSKPYRERGFPDCKRLKHVDTKFHFLREL
VQQRTIEIEFVRSAEQQADIMTKGLPAVVFKDLRAKLGLEETCCD
>Copia-5_PSt#LTR/Copia 418-5700 via tfasty with Copia-22_MLP, 58.6% SW:1774, 3 frameshifts and 3 stopcodons. [Puccinia striiformis]
MSSPSESGKTPANRPSSPIDNTLSDITGYPNIGRGTEQVNDIFNRHLGEDWEERLSVTHPPRQRAYSETDTTVTSFRIPG
SFIPPRPATPRPRRQLIPEFTSPHQSSSRLPPQPTQSTPFRFHSPPRPNLTPFPRNQQTIPSDISFVLSPSFSFRPPHIL
SPPPPPPPPPGYRQPSPTPSPSPTPVPHSPDNMPDQPIAPHQVRADLEAVKAQLEETRIVNQAIKAGREFFATAGRQLAA
DGSNFEDWAANIKEAGNTHLGESDFFTTATTNRILEKIGRGIFLASIDDSLKSDIQVATTCLEMHKLVTQKFKTISRAAQ
MNTWQKFKTFTLEDHPSSAGVASKLRNLASEWKSMKLEFTEDTFLGFVLQDSVGVTSTVAKDFNNRVESLVQADPTNPTP
KFDKLIHLFEICQQQHSLSTAAVSQASTPPVFTQQPSSVLQSTVLPSDSLPSFDQQAYLEEIHPDDWAEALNCYSVTANR
CWSCGNSSHYLRDCPTRARGNPVHTPNARTRNLLVSTTTNSTVTIQLCSFLPNRRTYVPATWSSFSTSTVISSISTTSAL
STTLSSTILPSICPPCSKWLSTTRSQTNGFFQSRISTSTSITTTSVATPQATNRLNRVGASARNVELEGLGADLSNVDFR
SMTADLSDVSIPAIIDSGASHHLTGEYKMLHNFRELKVRIPLNVATKGSGATISGTGDLRFRAPGGTTISLEGVLYCEQA
RSTLISLAALRKANSFFDYDCQKDSFEIYNRFRQHVFSCVFERHNNRWCIPYPMVATEASTSLSLSSPQSHHHVPPLLFL
SANNKKPISYDPFITPFERVYPSTWNPEHLTASEKQLLFWHRLFGHASLRKIRSLIKRKLGIGLPDDLPAGKIHCPVCAI
SKSTSLNPVTSSMRKPLRLDILCTDLMGPFPEETPDGCRFLLTLRDVSSGYSYVKLLKNKSDANQVLISAINILENQTRS
KVQILRSDNGGEFANKEFADFLNSKGIVAERSLPYHHYQNGVIERFNRTIADMGRTVLHDSRLPRSFGGFAFVWANHILD
RIPNKASGDKTPFESMFNQPPQFDGFRVFGSKAYIHIPHKKRDKLADQAYEAIVVGHLEQSKGWLFYLPVEQKFVSSSMG
RFVDSTQKFDRPPPSNALYRPALTTSPTNKMSLSFIANQLELGNFRYEEEFTNQELIIDSILESCEFFGIDIPRTYKQAM
KSTDKSSWVTAIQEELNNLSHMEVWVSQMMPPGKSALDGRWVFARKSNAEGDPDCFKARYVAKGFKQIAGKEFGATFAPT
ATFVSFRLLLIIAGHFKWPVHTFDFVVAYLNSPIDEEIWVKPPEGVQLPEGHAFLLKKALGRFTSSxSARFVKPNQQKPK
NLFFCFWKTAKKTFMWAxLSWLLISLNQQKVKPAKLQKGFTxTALLYGTRQAARCWWLHLRAILDKLGYSPSQYDNSLYI
LQHKDFHGVIWIHVDDGVVTASTVELLRQLETDLKDILKIKWSTTLESIIGLAVQRTPDGFILTQPKLIKSLLKAEWDGV
VTAKTPLPPNFNAATEGGDASTSTRYLSVIGTLSYLAVSTRPDIAYAVNYLARFSAKPTVLHWKGIRHLVNYIAGSADQQ
LCLFPKNTDHELKTFADASWGGEFSRSSYGVLITFLGCPVLWVSRRQASVAASTCHAEYMALGAATRHTLWVRHLLKDIL
NKDFVGLLHCDNQSAVHVSTDDASNKRTRHTDRDFYITNEALFKKMIQLIWVPTKDQLADVFTKSLGPEAFARMRSFLLR
PG
>Copia-5_PD#LTR/Copia 138-4227 via tfasty with Copia-72_VV, 80.3% SW:3551, 5 frameshifts and 1 stopcodon. [Phoenix dactylifera]
MASRNLKADFEKFDGKGNFTLWQQRVKDLLVQQRIYKVLVRKRPEKISVEDWEELEEIAFSTIRMCLADQVLPEICSETT
AKGLWERLENHYMGKSMTNKLWLKKQLYSLRMPEGGDLISHIQKFNQVCSEVMSLDVKIEEEDRTLLLLCSLPGSYDGLI
TTLVYGKETLNYEEVIGVLRSNEQREKICKGSSNSEVLAVNERQGRPRERVREKSKGRSKSRGKQKAWKCYKCHQIGHIR
RNCPLLKSEKEKNSSKGGSASHGGALSSEDSGDDILVVSDGTxRMTDRWTLDSACSHHYTSHREWFDTYEKTDGGSVSLG
DDHPCKVAGVGTIKVRMYDGVIRTLTNVKHVPELKKNLISLGYLEKHGCAFGSQPGSGCLRITKGALVVMKGRRMTNNLY
EMEGSVVTDGAEVLAAAQEKQLVYKLWHYRMGHMSDRGLTELGKRGLIPVVEKEGNDICEPCIYGKQHRVKFANSFKRSE
GILQLVHSDVWGPAPVSARGGARYFLTFIDDFSRKVWVYLMRKKSEVFARFKSWRAEVEKETGQPVRCLRSDNGGEYTDS
EFRRYCEENGIKRHFTVRMTPQQNGVAERMNRTLTEKARSLRLQASLPKTFWGDAITFSCFLVNRSPNRKLDGGIPEEIW
SGKKVELGHLKVFGCPAYALVEATERSKLDPKSQKMVFIGYPRGVKGYLLWDPHSQKCTISRNVIFDEESILKKPGSADE
AQKAGQGSSGQHSLAGDVPSNSTSKRVSFEMEFGRHVPTRVEDQLGGPSVQEEVQVEPQSSGLRDLVRGVAPHRQKRIIY
KPVRYGIDETISYALITANGDPETFEEAMESSERESWMQAMMEEMQSLEKNRTWQLVDLPEGARAIGSKWVFTKKEAPSE
QGGVRYKARLVAKGYSQREGVDYTEVFSPVVRHASIRVLLSLVAQYDMELEQMDVKTAFLHGSLEERIYMQQPAGFRQPG
LEEKVCLLKRSLYGLKQSPRQWYKRFDTFVLSLGFSRCEHDSCVYVKDVDEEDALYLLLYVDDMLIASRSVNAVNGLKSA
LSAEFEMKDLGPSKKILGMEICRDRSKGVLHLSLGGYIQKVLMRFGMDKAKPVGTPLASHMSLSKLQCPQTDEEKEYMDR
VPYASAVGSVMYAMVCCRPDIAHAVSQVSRYMANPGKEHWQALKWIFRYLQGTRRLGLTFGQQDGHGRNSNASREFSGPL
EGFVDANFAGDLDTRRSTTGYVFSMFSGPVSWRSTLQPITALSTTEAEYIGITEAAKEALWLKRLIQEMGVKQSTVVLHS
DSQSALQLVQNPVYHARTKHIDVRYHRIRELVEDGEVMLVKVHTKKNQSDALTKILPRDSFLSCVGLMGLTDQVELAEAL
EHQGG
>Copia-2_SPDB#LTR/Copia 632-4723 via tfasty with Copia-72_VV, 60.4% SW:1044, 4 stopcodons. [Spizellomyces punctatus]
MSVRSNSPTSSVYMSTSSTADKRGCRAFVDGMLKDIGQYNGEPNTMKLNTFLGRVDMVIKHQMVPPDMVVDFVSTKFMGL
AQQWWTSLSPTRQASFTAWYDQEDGHGRTITGLRSALYVRFMPRTHMHDTLRWLKQLKPKTNQSQSMDEFVAYFNSQIYS
LPSMPDFIKQDYFISALPAEVAALLQSNEENLTSLETLQEAATRIYPVIHKHAKPQGGSMHAAPAQVTQMDNASGQSTTS
KKGKKGKQKKQNEGHIEKQPNSNQHSNQNSNQSTPxPCRYCNASHPRTVCPLILKLVQKQSNCLSASLTEACHVEMVHDD
VPYSALINSGATDHMTPNRGHLDPSTIYQDVRNVSLADNTILKSTVQGNVIIKADGYSTPLELRDVLHVDGLQKNLISIP
KCNENGVDVTFHSSGEVSLMKNRxQIASGIxWNNAYYLEGTLKPQGFPDTEVCATEVSPALAHARLGHIGQHVLGKMALA
MLSWPIVGAHSHRDCEACILGKSSCTPFPPANKEPRELCELIHSNLQGPFxITGLDGECYALVYIEYTSRYGVTYCIPNK
EAETILSKFKEFKAWLECTTDKKICTVHTDRGGEYHGIFHKYLMDCGIQHQQTTAYSSQQNSIAERWNHTSLGRVCAIFA
DMKLPWKLWAILIQMVTYLHDLTPNSLSDKTPHELLFQCRPNVTHLRHIGCIAYAHVPAAGRDKMANRARKTYLVGYAQQ
NGTKAYLVWDLVCNAIATSRDIKFNEDAPLELKYQQDPSTMDLLDETTSDDDQEYQIDYIMDKCQTRVHKPEYLVKWTGY
TDPTWEPRVTVDDTQVLDTWENCIQAYAIDVHTGKINPESLTFKQAMATPDANDYLIACQQEIESLKAHGTYVTVPHPPH
KHVISTKWVCHKVFNPDGTFKKYKARAVCQGFTQRPGIDFDDMYSPTLPLPILRLFLMYMVQHGLDIHSMDSVTAFLNSE
MDKEVFIEQFEGFELPNKPRKSWVLMLKKALYGLKQSPLLWYQNLRTALEELGYCVVEISPCMFYKYAAPGHTNSDVQPS
LLTLVIIMIFVDDLLILTKDPEQMNESKKELHSKFSFMDQGHITNHLGLAYEYDISADIRTLKFSNPMYIDNLLDHFKLM
NCHAIATPYAMSVRSQQMQESAPFPNPKIYQEAVGALTWASISWQWDIATAVGYVARNVSTPTQCDWEAVKHIFKYLKGT
RDFAITYTSLEKDPCGLRVYTDADYAGDLSDCKSMSGLLATWNGYPIHWKSSKQTCVAHSTTEAEYITASVGFREILWIH
QILADMFKPIAGFQLVPTPLHIDNESAATLAQTKAINQCMKHIDRHYHGICRGVTDKQIVILDMDTKEQMADYFTKPLTQ
EDHN
>Copia-2_AT#LTR/Copia 39-4150 [Arabidopsis thaliana]
MATSYPFPDNVHVTSSVTLKLTDSNYLLWKTQFESLLSSQKLIGFVNGAVNAPSQSRLVVNGEVTSEEPNPLYESWFCTD
QLVRSWLFGTLSEEVLGHVHNLSTSRQIWVSLAENFNKSSVAREFSLRQNLQLLSKKEKPFSVYCREFKTICDALSSIGK
PVDESMKIFGFLNGLGRDYDPITTVIQSSLSKLPTPTFNDVVSEVQGFDSKLQSYEEAASVTPHLAFNIERSESGSPQYN
PNQKGRGRSGQNKGRGGYSTRGRGFSQHQSSPQVSGPRPVCQICGRTGHTALKCYNRFDNNYQAEIQAFSTLRVSDDTGK
EWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNGKIPLNEVLVVPNIQKSLLSVSKLCDD
YPCGVYFDANKVCIIDLQTQKVVTTGPRRNGLYVLENQEFVALYSNRQCAATEEVWHHRLGHANSKALQHLQNSKAIQIN
KSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVF
ISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKF
WVESFFTANYIINRLPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCF
YPPTGKVYISRNVIFNESELPFKEKYQSLVPQYSTPLLQAWQHNKISEISVPAAPVQLFSKPIDLNTYAGSQVTEQLTDP
EPTSNNEGSDEEVNPVAEEIAANQEQVINSHAMTTRSKAGIQKPNTRYALITSRMNTAEPKTLASAMKHPGWNEAVHEEI
NRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSK
GWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFV
CHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANGLFLHQTAYATDILQQAGMSD
CNPMPTPLPQQLDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGL
PIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLG
IPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPRRAFVDLRSKLG
VSGSPTPSLRG
>Copia-2_AN#LTR/Copia 187-4733 via tfasty with TNT1, 1 frameshift. [Emericella nidulans]
MPPKASRGTKSNDVPFQMTTRHRTYEPETPVSADNQISNDSTDEDQPDEPTTMEDMRAGLLRQLRDELREELREEMAQQL
RSEIRHEIRAEQQHQSPTQQLHQEINQNASYGRNTDIQQRDLIYCEKQDIRKLAKSKFGTQASILLNGRSNYTAWRDSML
MDTYMIEAKDILDETKPPDGSNEIDIARWETKNEILHTRILQSTARHVRQTISWKGSTLASELWARITSTYGLSMAEERL
MTVKALLDINPQGNYPAMVRDFQRIAAKIKEMKLSLDDVIHDIFICSLGQWQQNFVRTKLDEFYSCGRGPIKNLDIDTFA
DQLVARSSSSNNKYIPQEPQEFKLEPRYRIILTEPKDSSRTKRDGQDQKPARTKTLCQACGKGYHKPDDCWTLHPEKAPK
RHGNQASGTSNDNKNQQPTGQELVLRNHPQANSIAIVPAKEPENDEEPQWLLDTAAAFHISNKYHVFINLRGHKAYINDA
GGRTHQIIGIGTALVYGVEIPDVRYAPTTTADLLSFSQLDDQDFDVSTQGTVNKKHFYITSPTGASLDAFKEQNTCLYQI
KPVAYAIQPILHAKDTQKETNNIIPTATMEEWHQHLSHVHLQAILKMAQQKIIKIKGPKTLAFCDICRQAKERRKSTKEP
ASRATKILVRIYIDIAGGGAILDCKDKQAPPGIRNIRYFLLITDDATQYQWVYTLRTRDEAIPTFQGWLEHIKNQGYSPP
AFVRSDREFLTEHVKKLCQTYGLIWEPTAADSPWQDGVSERGIQTVLQYTRAMLYDSGLPRWLWPQALQTAVYHMNRLPT
RVPLYNDRRPMAPTSDPEIQPCAHFTPYSAWTNGDTDIKHLVKFGSPAWMHLHGASKYAGKPTSKIDPKAKKVHVVGYQG
RHIYVIWDPEINQLRDTSDISIKEEFNPPQSKPYEAAKAPEAAKALETVKPGETAEAAEPKTNEDLLIQDISDITSREEL
YRPAKGFAIQKSVESPLPEPKSYNEAIKGPESAQWHAAMQEEINTLKQKQCWDLIRKSDMPAGARAIPGRWVYKKKLNPD
NSIRYKAQWVIRGNLLDKSEFEGATYAPVVDPITSRILFGVSAQKGWHIIQADAVLAFLNAKLKGQPIYMHQPLGFAEGE
PGTLVCLLRQSLYGLTPSARLWYDDLRAYLESIGFKVSPHDPGLFVHVTEKLYITTHVDDFMIVGEKAQNAVQALESLKS
RFEIKEAPEFKRYLGMNIKTTPTGIHLSQEDQIDDIINSFRLHNAHPTKSPLDPGTVIDDAPDPKINIKEYQHGTGSLQY
LATKTRPDISRAACFLAEFNTAPTAKCWAALIHIIKYLKGTRSLGIRYQHDPAANIKPPKAFSDSDWGGPHTKARRSVGR
YVFKLAGGPIAWQSKRQTCVATSSNEAEYIAASEASREAYWIYSPQTSKDRQKFIKIQRLAKFMKDLRLFDDQHAPGILL
YMDNKGAIDLTMSNIQTKRSKHIDIRYHYTRDMVDQGIIHIKQIPTAEMVADGCTKPLGSEAHSHFIRLLGLHNDD
>Copia-2_GM#LTR/Copia 82-4105 via tfasty with SHACOP21_MT, 77.0% SW:3175, 1 frameshift and 6 stopcodons. [Glycine max]
MQNNNGNGNSLNQLPIFKGINFHFWSLKMKTLFKLQELWSSVESGFEDDGIESVESRFEDDGIEEPDQALREKRKKDAKA
LFIIQQALDDEVFPRIAAASTAKEAWHILNQEYVRDKKVVNVRLQSLIREFESFQMKEKENMQECLSRISSTVQQIRTLG
EEIKESQVMSKVLRSLTKKYDHVVVAIEESKDMETYTFDELKGSLHSHEERICKGDDKKxEKAFQAKGESSNKKRAKQSS
SRGRGRGSRGRGRGRGQSNEEKDQSSQNYQGSFKCYYCKKPGHKEASCWKKEEDEQKGRDQKSNFVEQEEKLFLAQHTSN
NDAEGGVWYVDSGCSNHISSAKPIFRTLDETAKTKVRLGDGKHLKxKGRGTIAITTEQGNTKLLCDVQYVPRLAHNLLSV
GQLVNSGYSVLFENGACLIQDRSSKETVVKIAMGKNKMFPLDLSSHVIQVLIVKGDDNAKLWHLRYGHLNMQGLKLLHSK
DTVQGLPKTGELELCEGCIYGKQSRGSFPTGKAWRASECLELLHADLCGPMKIVSLDGSKYFLLITDDYSRMSWVYFLKA
KSEAFESFKIFKAMVEKQSGLYVRALRIDRGGEFLSNEFITFCEEQGIRRELTAPYTLEQNGVAESKNRTVVEMAKSMLK
ARGVPNRFRCEAVATAVYILNVSPTKVVINMTPLEAWRRKKPFVSHLRIFGCTAYALVDLRTKLDDKSVKCVFIGYATQS
KAYRLYNPLTGKIIVNRNVVFDEDAGWVWEECEISKSVQQKSVSFDGSDEVSNVPENDHTPSPPLTPSSQGSLTPLSQGS
SSSSSDSAPRRYRSLADLYENCDFALMAADPTCFEEAEKEVEWQNAMKEQIKSIEKNTTWQLLNLPEGKNVIGLKWVFRT
KFNTYGSIQNHKARLVAKGYAQQKGIDFEETFSPVARFETVRVVLALAAQWKLKVFQLDVKSAFFNGDLQEEVFVEQPLG
FVKAGEEGKVYKLQKALYRLKQAPRAWYSKIDSFFLQNEFERSENEPTLYVKKGTNxFIVVCLYVDDIIYFSSSQKLLEE
FKAAMMNQFEMTDLGLLxYFLGLEVKQGEDRIFLCQRKYAEDFLKKFHMEKCEAMRTPMNTNEKLQRDDGTEKADEKLFR
SLVGGLNYLTHMRPDIAHSVSVVSRYMHSPTKxHLGAARRVLKYVVGSIKLGILYESVDNFKLVGYSDSDRAGCLDDRKG
TSGSVFSLASGAITWSSKKQDTVALSSSEAEYVVVGAVARQAIxLRKLLKDLCCEQEGAIELWCNNRSAIAMTKNPAFHA
RTKHIEVQHHFIRQLVAEEKLVLKFCGTNEQNADLFTKALAQAKHQFFLEKIGMHELELRG
>Copia-2_SI#LTR/Copia 254-4212 via tfasty with Copia-24_SI, 80.3% SW:3491, 2 frameshifts. [Solenopsis invicta]
MMADSLVDLKNVTKFDGQNFQLWKFQMKAIFIAHDLLDIVNGTAVKPEATGQPQIAWIQRNAKATVLISAAMQPSQLEHL
ITCDSAAEMWNKLSAIHEQTSATSKLLLTTRFHEYRMKLGDSVSQHITKVENMARQLKDVGEAVSDVTIMAKILGSLPPK
YNAFVTAWDSVEEANQTIFNLTQRLIKEENQLTATDEAASALAAVNLKHHKKGPRRGKLRQPQESDAEHGKYQNFECHFC
HNKGHIARYCKKKRNVQKGQDEKKRGANDDRKSDLADHDAFVASSDISVTECTDTDDAWFSDSGASQHMSFRKEWFAEFE
SCNGITVSLGDNSLLKAEGRGTIFIKKLVNGEWQDGKLVNVLYVPLLRKNLFSIGACTAKGHVFVIRDNGIDIYSKQNKL
IAHGIRQGNNLFRLEFTAIVKREANAVVRSTLKLWHDRLGHVNNKYLQAAIENKLIDGVKVSEISDFFCENCQYGKQHRL
AFKSKSPRKMLKPGEFIHTDLCGPMQTPSIGGAKYFILFKDDCTGFRYVHFLRHKDDVFDVFKEYEAMIFNKFSQRIQTI
RSDNGTEYSSHRFRDHLKSRGIQLECSAPYTPQQNGSSEREMRTIVESARTMLLAKKLPTRLWAEAVNTAVYVLNRTPSS
RSKLTTPYEVWTGKKPNLSHAKIFGCDAYVHVPEQQRKKWDSKSKKLVFVGYQGDSRNYRLIDPETDRITISRDVSFNEC
AEPIFECPAASLPLPNERAVLDNNEQPEQIDDCPRREADQCENPHHEVEPDVINSRPKLRNRNLLPPCRYEACFVSYTES
NTYDEAVTGKDSEKWTQAIREELAAHERNQTWEIVPLPHDRKAIGHKWVFKVKTTSSGEITRYKARLCAQGFSQKAGVDY
DEIFSPVVRYDSVRTLLSIAAANDLEIYQFDVKTAYLNNNLNEEIYMRVPKGLNVPNDNSICKLNKALYGLKQAGRCWNK
KFDAFFKKFKFARGSADRCVYFGLINNDKVYLALYVDDGLLMASKIETINLILNALKDNFDVTASEADCFVGMQIERDRV
NKKICIHQSKYIDSILHRFAMCDAHVISVPADPHVTLEKCLSNDELHDIPYREAVGSLLFVSLVSRPDITYAVGLVSRYL
ERHSNPHWQAVKRIFRYLKGTKNLGIIYTNSGSKLNLVGFSDSDYAGNKDTRRSTTGYLFELANGPITWCSKRQSTVSLS
TTEAELIAASEAAREAIWLRKLLNDVGHPCETPSLLYVDNQSAIRLTKNPEFHRRTKHIEVRHHFIRERYESGEINIVDY
IRSKDQKTDLLTKPIAHDHFQDLRRKINVIDVSKTLNQW
>Copia-2_PIT#LTR/Copia 5-4435 via tfasty with ATCopia36, 62.2% SW:1230, 1 stopcodon. [Phytophthora infestans]
MGPMVHTVATDEVQGKPEAEPSRERAGSQYGEDDEVKKADDETKGTQDKLLDLLKDLAVRMGRLEESQERQEEKERKGRE
SSVFGSSLGLGRAMDRQALDQTPPRRTSPAVSPATYFGMKQREYRDAAANVEMAQAPQPALPQHYVPPQAYRAPPPPSPG
PGFAGVPDTRQRKLGIRPLDGKELYHGLGSGFLAWGKRFVRQIQFAERASGFQWTEDVKVDILGHHLSGMAERYYNQQVE
GWWEEQPTPEHAMQRMLHTFATKITPAQSMKMFTAPKSSKRSWTEHYLYLVAVSEACGGADNLVLDNIVHYADPNMRVSM
LSRLNLARTDYLRQAEELAHFAQSTEIELRGKQLERDVVNDVHEDEKDDRECYKCGKFGHLRAACPNKKKRWGEGTDADF
VLTVEESATETEDWILDSGSSRHLVNDPELLEDAEDYESQCVAADKGALKVTKRGSVMLVTTAMGKMTKVRLLNVQYAEN
LERNIISYGLLEAKGYGLAYRGKHRVVAGINGGPAVFDVEKTNNVLTVRAMESRGTGRKGNVLMSVLAEGEADVGRDVQT
GPLMHFHRRLGHLNYDTIIKMAKDPASGIALTDEVRANCLACAQGKQTKKKQSRKDTGANSPIDVIGGVICSDLKGPMTP
RDRLGNRYMVNFVDHRTNYCRVFLAKTKDVAAQKFKHFMAYFERQFNCRIHVLRTDGGGEYKTLDLFCKDTGIRRQISEP
RNQASNGKAERMHRTVMNMVRSMVFACGLPLSFWGDAAEYAAYILNRSPTKANPGSKSPLQMLTKNTPDLSDIVVFGSPC
TVHVDAKNKSLGERGKAGMIVGKNDEIKGYRVYLPKDKVVVVTQHVSNVETLSDVQNEQLKRVHLEDSEESEGTGALETD
TSRTKTKEKAKRRGKKSRWTRDRHQTRSATRKPAEAVASGGADEDRVEQTADVVNSVREPDPKNYRQAKRSKLWRKWLVA
IAEELKALEENGVWVVVVPPIGSHVLHTKWVFKTKTDADGAIERFKARLVACGNEQIFGVDFGLTFAAVMELSAVKVILV
FARRWGVPARHGDIPNAYVKADKEQHLEIYLEIPQGMVIGDEVMRRLGVNVKGKLALRLRKSLYGLRQAGRLWSQLLHAK
LEEAGFTRCVTDMCLYYKREDGEMTLVGVYVDDLLVTASKPSLVDDFFCSMSVLSVKDLGEVRKFLGMRVELDSSEGYSL
DQQATIEELLEQHGLANANSVRVPVGDEHNEAEVDEPQLLTKVGAPGEPTIRRFQSLVGSLLWIARCTRPDISFAVHKAT
RRTHQPTTSDWKLAKRVARYLKGTKSVKLIMQAPTRKDDVMALESWSDADFAADKSDRKSVTGGVVTMDGAVVQWICKKQ
TGVSLSTMEAEFTSASQVGRELLGLRELVRELGFRVVEPVPMRMDNQAAIKQLESEESMASAKHVDIRVKFICDFARKGI
VKPEYVESRLMMADLLTKALPAPRIAELREIFKLKxR
>Copia-6_PGr#LTR/Copia 85-4181  [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MDTFSRKDAMDDKGISAVPKLTGENYSIWESKMHYFLDSRQLIDVCLHEQPLPISDETKAKHSCAMFHLSSVVDDSIYNS
IFKLSSNLTPFSVWSTLKTKYASKSIFSLCKVWRLWDTIHCDRGIISYVDRCLDCLGEFKTIGYDVTQDLFAVCIISRVT
TVKQDLMENLMLDEALVSDPYRLLEKLRTLAIHEQTYTKREERPTQPSSSTSALSTNFKGKGKRPPPPPPSQDYEHPCQN
GHDPNTTHSQRNCWYDNPTKRPKRFRAYPPAKATITQTTTSNQSNQQSSSSNANNENAVPSFGYCSTILQSAASQSKLIT
ILDSGASNHMFNSLEFFVKSEPTHIFIVTGDGKSREELVAVRRGTAMIQMADDKVITLHDSLFVPNLTRNLISLAQLIDE
KILIQRAGQVYEVISNSQEKLFNVNLSNQLFEIEGDIFPPHHQTVAMLTDSVETSGFTKWHNRLGHASTNRLKVVVPSSE
KLVKEKCCDSCMKGKMTRQSFKHHFDPTSAALEVIHGDLVGPITPSSNGGARYFLTLVDQFTGFINITILKEKSEAPDAI
EKFKIFYENQTGNRLKKLITDGGGEFCNKKLSGILEASGVQHNVSPPYTPQQNGFAERANRTILDMTRCILMQSNLAPEW
WAEAVKTACAITNCLPSLSKSRTSPIELLFKKRPNINIFRPFGCKVWSLKPEVYHERKFDSLSWEGVLIGYSNDYSTYKV
VRLDNHQIINIKHAYFEENVFPFCPALNKSLDNLKLSNNLPVFQDSSSLPFDESQLPVEEHSEEDHPEELLQEEIINEKQ
AQNGNDDKIINSNIDESNILTYSRRTALLSTAPKTHTQAMKGKEIDEWKKAEKKEYENMDQHKAWLVRKRRNDDTPIPLT
WAFRKKLGANNEVTEFKARICVQGFRQTFGLDFFAKYAPTGKPCSLRLLISFAVNNDMKIHQLDVRSAFLTCPLEDKVTV
TPPPGYEGPEDTVFELKKAVYGLRQAPLVWYKRLSNFLKTIGFNICVSDPCVFWRENQPGKPMTWIYAHVDDLVIISRNP
IIFKEEIEKEFAVKYLGDAEFLLGMNIIRSNGSIKINQQQYIERKLTQFDLQDAHPASCPLNPRIQLNKATVEDQESLKR
LGYNYRSIVGSLNYLSILTRPDISYAVSALSQFLEHPGLTHYNAAEQVFRYIGGTRKVGLTYKKQQESSLKGYVDADWGN
CLVTRRSVSGYVVMAGSHLLSWKSNKQDTISLSSAEAEYKALSDLSREMVWITSLINEVNVMKSPINIPIYVDNKAAIDL
ANSETSQNGFRTKHMDIRLHFVREHIQSKLITLLYIKSNENPADFLTKSVGRCTIRRSLKVLGIYGDLDSALHLTTQSTD
DCWNFS
>Copia-8_Ano#LTR/Copia 239-4155 via tfasty with Copia-1_Ano, 74.0% SW:2714, 1 frameshift. [Anolis carolinensis]
MALPSQGGAGAALFSFQKLTSENYLLWAERMQCLLIREGLWKSVQNRPDPTKEEEVELDEKARATIILSLSDRMLCHVRN
FKTAEETWNGLKELLQRPSAGAKVTLCRRLYSMKLNVGEDVKLFIDNMMCLFNDLSARKLEFSEEHKAMVLLSALNKGYD
TLVGSLSVLPDDQLTPNLIVNKLLEFQSCQEMKRKDFSGSSSSQQCTNTCAAIKTCYFCKRPGHFAKNCPAKDKGRRKTF
VKPAVEDKDASRQGFSRQRLMLIDRMNSNQNGLIFIVDSGSCFHIVNKENVLLDAHSPSINYVCLADGKILNVQMQGNVF
VNSLKTIISDVLFVKEIEHNVLSVSLLLKQGFDVIFKNESNQIVCKDNGIATKLVEKNGLFFTNGNFDNDLNCLKNVPLH
MNCIHAFHRTMGHVGYKALKNTVLSCGLKLSNCDNFLDCNICNRTKLKRYSVTRKSLRRTSDILQLVHCDVAGPMPLSLG
GARFFLIIVDDFSRFNFVYVLKGKHEVFEKFKQWLNLVERQFPGKRVMKVQTDRGTEFVNEKMDKLFKDRGMIHQRSNPH
SSAENGVAERWLGLLEGMMKRMLEDAQMSSGFWAEAINTASYVLNRVWSSSINDTPYSLFFGKKPDLKFLRVFGSFAHVL
VPVQQRAKRNQIWRKMRFLGYEAFTKGYRFLGPDKRVVVSRSVKFDVHSGWDRIHANEEVFLPMGHQLTTNMENVKRELI
DAEDSLEGGSDVSEQISKRKRYEKGESSSSEEDESLNKRKVVKTEKIVPVVRRSERKNKGVPPKRFQVGQVSGQWTEPLS
YAEVLERSPSEQELWKMAMKKEFNSLKRLNVMSVVEPPKDSNVIGCRWVFRRKVVEDGSFVYKARLVAKGFQQKLFEDYD
EVFAPTVKCETLRLVLSVACAKQLVVRHFDVETAYLNANLDETVFMSRIPGFEDDSPTGIYRLNRALYGLKQSARNWSHH
LHGLLCGLGFTRSSQDACFYIRGSGNEQVLLVVFVDDVLVLAQNHDVVDEVHRSLSKKLRIKDLGNVSKYLGLSVVRTEH
RILLSQCDKISKLLEKTGLSDAKCAATPMAVEFLKQVAGEKFKFPELYRSIVGSLQYIAGLTRPDISYAVSVLSRRVQSP
SCTDWNGLKRVLRYLKGSINKVFEVKPFDKSVLSVYSDSSFADVENHKSVSGFVIKLGDCLLSWKSRKQAVVCLSTSEAE
FASLTEACKEMMWIKKLVEDAGISLEDKVQVFVDSQTCIDLAKMESLKARSRYIGVRHAYVRELVSNGEMCLNYVRSEEN
FADVLTKALGEEKFLKFSEMLGLVSA
>Copia-7_SMo#LTR/Copia 272-4531  [Selaginella moellendorffii]
MSSANAAGNSWDSGGWEKLLQKFTGQNFSTWKTKVQLILLAKDCWPIVDGTTQRPAAADVTQRLDWDSKNRKALSVIGLG
LGDEFVHLLDLTKTAHQNWTSLTQIFAAKAANAKVVLTQRFFTMRMQPDDTMATYIGKFKAMITELKDAEAAITIDQAKA
FLLSSVSPDLQPFASMLSAVPGKDLDSLYSDLIEEERKQNERRQKAPSQAARVEQALIMGKQSGGKKRDGPVRGQKSPSP
SPGFATNKKRKGPCNYCGKAGHVERECRIKKAAEKARAERSSSSRQPDTMLMMTLAASSSTVSEAEVLWMDSGASMHLTP
LKRAFHKYRPLEQEKQVFVGDKRPLTVEGQGTVIIKLESGAEKLVNQVYYVPEAGQTVFSVGVAADQGFSTLFNADGCTI
FDETGHPVAFGRRAETLYKLNAQLILSTHEQGHLLAIRPSSWAANSLQLWHARLGHANSHDIQLLASHKLADDFTLTGAG
QLGVCETCQLGKQPRLPFPRRSPEDGASGFLQLVHTDVCHVPEATLSHKRYFVSFIDDYSRYAVAVLMAHKGEVYHHFQV
YKSWAENATGCTIRTLRSDGGGEYMSKEFLAFLAQAGIHHEYTAAHTSQQNGVAERLNRTLMDCVRCLLQHAGMPKVFWG
EALNTAVYLRNRLPTRSTGQVPFQVWTGKRPKLGHLRVFGCVAYAHIPDVQRRKLDPKSEKCIFMGYHTQVKAYRLYNCQ
RRKLVVSRDVVFDEARLYRDTLRLPPVSPPSLVDLSEILDDVPHLHPAPDNPAAAEPGGVAEGAPEGGDLAGGADHGTSL
PSTPPLTTPQATAAASSSTNEQPDLSTLVADLFVGDELYQDATTPPSIPKLPPPPAGTAVVTRSGRVVKPSLKAKEAMPI
GKRAYFWALSAPPASLGPQAALHGPEAEHWQAAMQEEYDSLQKNNTWSLVELPARRKLVSSKWLFKKKYDADGSIERYKA
RFVARGFSQVHGLDYSETYSPVVKLTTIRMLLILAAELDLELHQLDVCTAFLNGDIDEEVYVAQPPGFIQPGEEHLVCKL
NKALYGLKQSPRQWYTKIDSFLISLGFVRSAADCNLYIYFDAEGYLFLALYVDDAILVANQLRLIHKFKTYLGAKFAMKD
LGESHFCLGIQVTRNRERGTLELSQAKYVSDVLQRYGLAHVNPVATPMEAGTKLSAESGEYLDQSPEEEKASRAVYRSMV
GSLIYLVISTRPDLAYAVGTVAKYLDRPSTAHWQALKRIMRYVAGTNQLSLKYSRGESGNKLAGYSDADWAGDPDNRKST
TGYVFLLNGNVASWCSKRQAITAMSSTEAEYIAAAAATKEAAWLKGLLQDLQINTGVVKLLCDNQSAIALTKNSRFHSRT
KHIELRFHFIREQIQRGMIELEFCPTNSMLADVLTKPLPRVKHEVFTKALGLTLDVGLEE
>Copia-8_BRa#LTR/Copia 49-4197  [Brassica rapa]
MSGEGNGNGGYSAPAIPKFDGDYEHWSMVMENLLRSKEYWTVVESGYTQPAAGVEMTAAQRSTLEEMKLKDLKAKNYLFQ
SIDRTILKTITQKETSKQLWDSMKMKCQGNARVQRAQRAQLNRLRRDFEILVMKQGESVDVYVTRVMVIANEMRNCGEDM
PDVKIVEKILRTLTDKWNYIVCSIEESKDVDSLSVDALQSSLLVHEHKFKKDGGEEQTLAVTDDYHGGRGRGRSGFAFRG
GRGRGRGRRIFNKATVECYNCHKLGHFQSECQANYAEEEVEEMLLMAYVEEIQEVEEVESSQLSLMAHIEEPQKKHHNDV
WFLDSGCSNHMCGELSLFSELNEGIKKTVRLGNHSQMKVMGAGNIRLSIEGVSHLVQDVLYVPDLKNNLLSIGQLQEKGL
EILIKSNECRIYHPSRGLIIQSKMTTNRMFTLFSKNETNLAMMCLQTDAQDKFMLWHQRYGHLGYSGLKTLKNKEMVNGL
PDFAETEVVCTDCLKGKQHREIMPKKAIWRASEKLELIYSDICGPISPTSNGGKRYLICFIDDFSRKAWVYFLVYKADAF
ATFKQFKSGIEKQSGLRIKCLRTDRGGEFTSSEFNEFCKDSGIKRQLTTPYTPQHNGVAERKNRTVMNMVRSMLVEKNVP
KVFWPEAVNWAFYLLNRCPTSSVKDVTPEEAWSGIKPSVAHLRVFGCIAHTHIPDVHRTKLEDKSRRGVLFGLSAESKGY
KLFDPTSKKITVSRDVIFEEDKKWDWDVTYEESIQVDLEWENEESQDDAGRENAEEVAGQEPEAEDGDNEIVENPNTGSS
PMATAGSSSMATATTRTDVAESSRGSGRRQTRPPVRLSDYITGDQYEEDELAQFALFVEGMVQFAFFAGTDPVNFEEAIQ
SENWKRAMDSEINSIEKNDTWTLTDLPQGAKSIGVKWVFKTKLNQHGEVEKYKARLVAKGYAQEHGIDYEEVYAPVARLD
TVRMILALSAQRGWTVYQLDVKSAFLQGELTEEVFVEQPKGYERRNAESKVLKLRKALYGLKQAPRAWFSRIDSYFRKMG
FEKDASEQTLFTKTNEQGNTLIISLYVDDLIYTGSDETMMRKFKESMMREFDMSDLGEMRYFLGLEVMQVDGGIFVSQKK
YVNEVLKRFGMEESNSVLNPIIPGFKIHKDDDGVRVDESLYKQLVGSLMYLTATRPDVMYAVSLISRYMSKPTELHLTAA
KRILRYLQGTTAFGIFYQKKGNSELIGFTDSDYAGCVEDRKSTSGYAFILSDAAVAWSSRKQAIVTLSTTEAEFVAAAAS
TCQLIWMKRILKRIGYEGSSSPVIFCDNSSAIKLSKNPVMHGKSKHIDVRFHFLRDLVNEGEVQLKFCGTRDQVADIFTK
PLKLEAFEDFRKKLGVCDVSTIN
>Copia-8_DWil#LTR/Copia 57-3926 71.9% sim to Copia-113_AA, SW:2478, [Drosophila willistoni]
MTNIYPCEKLRGRENYDVWKRQAQSYLVIKGCWSVVCNGPSEKEASLDERALAEITLMIESTNYAHIAKSKSAKEAWDAL
AQAFEDSGLTRKVELLKKLVQLNLEQFDSTQEYVNEMIMTAIKVNNAGLCISDEVTASLMLAGLPSEYQALVMAVENSKS
TLTVDNVKGMLLQDVKFDNNAGINSNAMYSRASKQAKRDKAKLNNRFGKTVICYACGGKGHMRKVCPSVVQEERSDEEKA
ALASNTSLLVNANPHVGKSETVWYIDSGASTHMTNDRRLLSNESEVSNKSVIIANKEKLHVKSRGDVGILLHVNGKSVKG
NIHDVEYVPNLCGNLLSVSQMAKNGKRLVFEKNHCYIFEKNILKATGYLQNDLYRLNCELPKVEKALVAINGFELWHRRM
GHICDTKLQLVKEATDGVEYSVNESCRDKCIVCLKGKQTRMISKQPGIRAEGLLDLVHSDVLGPLRVKSFSGARFMLVFV
DDYSRKVFVYSIKEKSDVVRKFEIFKNLAENQTGRKIRILRSDNGKEYCNQELEHFLQNAGILHQTTAPYNPEQNGVAER
MNRTLLERVRCMLLDSALPNIYWAEAANTAAHITNRMPCRGNSSSPEELWTGSKPNLKYMRIFGCTALAHIPKQKRGKLD
AKSEECIFVGYSDTSKAYRLYRKSDRKFLISKDVVFIENNCRDSTQHFGEMGTVEDNCRDGKQSLEAEPLYQEDLLKQST
SEFESWNTDTEETVDAEELKTTAGHVPDAFGVRRSKRIANKLEEHHLCCVVSQGDDPLTVTEAIKSKLADSWEDAMKSEM
LSHELNNTWTLTELPKGKVAIQSKWVFKTKRESGDLVPRYKARLVVKGFSQKEGIDYTETFAPVVRYTSMRVLFAAAAKY
GLTIYQLDAVTAFLNGDLQEEIYMRQPEGFDDQSGKVCRLNKSLYGLKQASRVWNEMLNKVLLGFGLQRGEVDQCVYHYV
TGSTMVYVAVYVDDILIFSNNKQMVAKIKGELSQKFNMKDMGEVSSILGMRVRHNKTEGTIKIDQSNYIAGILKRFGMDD
CKAVSTPVDVAQSLSADMGPQSEADIEDMKKVPYLEAIGCLLYAAQNTRPDISFAVNMLSRFSSNPGMVHWTAVKRVMRY
LKGTLNKCITYHATGDDLKGFCDADWGGDLDGRRSTSGYIYVQQGGAISWCSQRQRTVALSSTEAEYMAAVSAIQEAIWL
LRLQKELYLIDTNKIVLCCDNKSALHIIRNNSFSPRTKHIDIKVKFIREWLTNGSIRIEYIPTEDMPADALTKPVPASKI
ALLGSRMGLT
>Copia-8_DPu#LTR/Copia 337-4248 [Daphnia pulex]
MRYCYGRFLIFNSCDETRKLALLNSRNSHEMWTRLETQYLQRAADNKHLLHRDFLNLRPTAGEDIMVHITALESMATELN
DLGVNITQHDLITTIMCSLPARFGFLASTWDNIPDNERSMDALRARIVSEQRRIELRRIEEQASLPPPQERNNSALQAKG
IQRTPFIRNARGGRGRGNGSRDVVNRDTAQCTYCGKSRHYEFECRLRIAQQGEKQPTPPKRPNNDDNGGSRVNFSLISVC
CLPDGDLKGIVLDSGATRHMCGELSYFTDLCDIPPNSWPINGIGGKILYAVGVGTIKMTSFVNGVSVEGELKNVLYVPNL
GVTLISIASLSINGYSVSFCNENASIQKGNTIVMTASRSGEGLYKVKAIVSQYATMGLNADTKSQVTLNIWHKRLGHVNN
QTVRRMANNIGIGGMQITPGSKSMEECCHGCEVGKMHKLPFANSTTKYSTVGECVVSDLVGPMQVNSVGGARYYVLFKDV
YSKYKTVYFLKHKSETANCFLEYTKMLTTDTGLHVKLLRCDGGTEFINSQMNTILTSLGIKLQTSAPYTPEQNGIAERDH
RSTVESARSQIHDRGVPLNLWAEAVNHSVYVLNRTLAKSQNKTPFELWHGVIPNISNLRIFGSVAYMFIPDTLRQKLDPK
ATKGVYVGESEEQKASRIFVVATGRTHITRHVKVYENLPYWPGISELPSSTPQTESTIQPLLHLETLENDVAPTTVPISI
EEPLQERQLTIPLRKSSRGLIPKKLFPMETFGSYAAVETSTLPMSCCISIALKGSSLYYEPQTYKEAMGGAESALWKLAT
DREIAAHMKNQTWTLTTLPNGRICIPSGWDFKVKTDKLGLPCRRKARFFAKGYRQVQGIDYQESFSPVVRYDSLRNIIAI
TAARNLELIQLDVTTVFLNGLIDELVFIAQPEGYVIPGREQEVCRLNKGIYGLCQASRIWNKTLHDALIQYGLIQSTADP
CIYYRITRTCFLIIAVWVDDGLVAGNSMDVIDDVIRYLNRKFKITAVPADLFVGIVIARDRPNQRIYLSIPQFIEKKLVK
FRLSDAHPLSLPVLKGSPRLSSYSAPSTPTEVATMSTIPFREVVGCIMYAALTVRIDIAFIAGQLAQHCQNPGLDHWKAA
QRVLKYLASTRNHGLCFGGNDVKDNILIGYSDADYAGDPDTRRSTSGYVFILNGGAVTWSSRRQPIVALSTMQSEYIATS
DSTREAVWIRRLLDNLGSTQMNPTALRCDNESAIGLAYNPLAHKGSKHIDVRYHYIQVTNKTIELGYVNTCKQIADVLTK
AVDGETFASCLNGFGLGKVPDIIE
>Copia-7_Pru#LTR/Copia 57-4667 via tfasty with Copia-25_Pru, 76.5% SW:4139, 1 stopcodon. [Prunus persica]
MAKDDDNSKSSTDGEFSNPDHPYYIHQSDHPGMVLVGKPLSGDNYSTWSRxFQLALSAKNKTGFLDGSIKKPLKAKPEFD
RWRRCNDMVLSWILNSLEPDLANSVIYTDSAHEIWADLEERFAQTNAPRVFQLHKEIATLTQDQMLLSTYYSKLKGYWDE
LSSYNNMEPCTCGVLKSIAAREEEQHLMQLLMGLHESYAAIRGQILLMQPLPTARKAYSLLLQEEKQRQVASTPNNTTSN
ESMAMLSIHTKKGHTSKQGFQQRPSSSNIGPSFQPRGKPREPKQCTYCNGKTHTIDTCFFLKGFPPGHKWHGKEVVPKLD
DNSRPSQNRSSHGSNRQHTNVHNIQSPVAQIHHLQTIAPHLTLEQCQQILGTVGKEEVSQSQANFAGLNYPFCLSSQTNS
YSSHAWVIDSGATDHITNSHALLTENSPTHLPPVGLPTGEKAPITSIGTVNFDDIFRLTDVLCVPSFNVNLLSVPRLTAS
LNCCVCFFPTFCYIQDLRTKKMIGLGKRHGNLYYFDPQRLASQLHSSSTYHVSASHNLWHLRLGHPSNAKLRSLSKHFSD
ISLPTHICDFCPLAKQTRLPFPSSSIKSIAPFDLIHCDIWGPHKIASHSGARYFLTIVDDFSRTTWIYLMKLKSETQNLL
KSFFSFVSTQFHKQIKAIRVDNGAEFSSLQTFFADLGVLYQHTCTYTPQQNGVVERKHRHLLEMARALRFHAHLPSKFWG
ECVLTAAYLINRLPTAILTDKTPYELLFGHPPPYRHLRVFGCLCYATNLQPTNKFDPRARKCIFVGYPFGQKAYRLYDLD
NEKFFSSRDVIFYENIFPFAAPHTTTISILPASPSTFSPHPGPHMPLSWPTPLSANNEPPIPTQPFDPPIPPSLDNAPPI
PTQPSDPPHILPFDPHIPPSLDNPHTTQNDLTDPSFSQSPHDTTLPSTSFPTTTPDQNSPTMPSPPNSLPSSPSSPPPLR
RSHRIPQPSIILRDFHCNATMPPNPAQSSSSPTPGKGSRYPLSHFLAYDRLSSTHRTFVAAISKIIEPTTYAQASTDPLW
CDAMAKELQALEQNHTWSLTFLPAGKHPIGCKWVYKVKYHSNGSVERYKARLVAKGYTQQEGLDYTETFSPTAKLVTFRC
LLALAAVRNWPLHQLDVQNAFLHGDLNEEVYMTLPPGFRRQGENLVCRLHKSLYGLKQASRNWFAKFTTALRAAGFVQSL
ADYSLFTRSQNNSFTALLIYVDDIVITGDDPKAIQSIKDFLNVRFRIKDLGPLKYFLGIEVARSKKGIFISQRKYALEIL
DDVRLLGARPSPFPMEQTLRLRPDEGKPLKDATKYRRLVGRLIYLTVTRPDIAFSVHILSRFMHQPHQPHLDAALRVLRY
LKSSLGQGIFFAAHNDLKLKAFSDSNWGSCPTTRRSVTGYCTFLGNSLISWKSKKQNTIARSSAEAEYRAMADTCCELTW
LRYILNDLGIRHSEPATLHCDNQSALHIAKNPVFHERTKHIDLDCHLVRQNITSGLVSTTYTPTNLQVADLFTKPLGKAS
FGTLLGKLGVYNIHSPT
>Copia-6_SCH#LTR/Copia 309-5369 66.9% sim to Copia-2_PSH, SW:3017, [Schizophyllum commune]
MSNSLYQATFLFEGNNFTQWVDGMSSWLEAQGLAYVIEEEVPSPRTNDAGTVVNQDEITSWKRDDVKVRGSIKLRLSPNV
KSSIPADKMETAKSLVEYLQEEYGSTQIADLFGFFQTALNAKFNSGQHPDPQINVVTNAFARLAADEIVIPELLKAMILL
HVAGIQSITESILQRYDKSDLTVAVVREALLTHYSHKQTMSGSHVQKFSNVKRKRDDPKYSNQQQSGNSAPNGGDKAEKK
KKDKRGQRGGKNKKDKGKGKQPEHAHAHATISEVVGSARISALTPSVENVKTSHVALITPAGTKVRQVVEKPAVAADKAI
ADTPIAEGAKNVFATAKELDLQVTPEIYREIDSVVNVGGFPVNMDCTDDFPTPRASSSKMQIDDEPPVKRARVDDHTLNS
FLFDGTIDEQISWDLSPLEEYLREENMFGDVEVNVDDAIAQAAGLTGADRQVPSHEDLLRNTDCGTQRLILSRDSVLYCM
LTGSHELCTNIFCACNDIAACPKCKGKAPLHGDELGFPPSWLVDSGASLHVTSEESDLAGYEKLSEPIVAQTASKDTTLA
LVGRGTAFVDHCVTRHGRKVVTTSQLYPVYHVPGLHGRLLSLGSLLQGGLSVRGNSTMISLHRKNSPLSVLEFYKLNEVQ
TLYFLWSTPSTAKTVQSVSTVYKVDYDIMHRRFAHPSKDVLRQAKKHTKGFPQDLVFPEETRPCKGCAQGKMHQRAFPPS
EHRAKNPFDVIHSDLKEFPTISYHKYRYFIGFFDEALSFGWTVCISQKSDAKQATRNFIAMVKNQFGATIKKWHIDNGGE
FKGMGMEEFLAENGILVEKGAPYAHQQNGRAERFNRTIMDKAEAMRFTACLPNSFWEFAIALATRIYNWTPIRRLKWKTP
YEALHKEKPDISHLRVFGCAAYVFIPEEKRQNKLSPKSELMTYLGIPDGVKGYLFMRSNTSLFVATQAMFDEEVFPRCPD
SDSNRRQHVPVGDEPQRDDDPADPQDLQGPGDLPGDDDDAPSPPAPPAPPLPPRGNDDDDDDQNHQDPPPDRRDKTPEAA
PPAPKRGRGRKQAGPPPEPTRKSTRLRSKLARPNNVYGDRAPAEIERDVSSETKWREMVGDDEPRSSRSKATSGAEKGVP
DPSSQPSSRADAPEHLDDDEARIQKLCREGGVGLITELLSKAIPNETVPDTSNIRNWTFRDIYKLPKALQKEWFDACREE
LEALRQRKVYSLVDRPKGRKVIKCRWVFDQKSDGRKRARLVAKGFSQVEGIDYDEIFSPVVRYETFRLVIALAALEGWHM
SGLDVRKAFLYGDLDEEIYMEQPEGFIAKGKQGKVMLLHKAIYGLKQAALAWWKALTKSTKAMGWVRLTSDAGVFFYEDS
NGHFCVIIVYVDDAMFFSKDKKLIAFLKAEFNKRWECRNQEITEEFLRMRITRDGSKIKLDQIPYLDKVLQRFGMQNCKF
AATPLPAGYVPMPNEDEVDPALRQKFQSVIGSLLFIMLGTRSDIAFAVTKLSQFAANPSQDHLHKALYICRYLAGTRDYA
LVFDGKSNGGLIAYTDSDWASDPIKRRSTTGFFMKLANGNICWQSRLQRTVAASSTEAEYMALSDCSRQVMWLKSLLAEL
RRKITVPVPICGDNQGSIFTGSNAYRDRRMKHIDIRYHYIRELVEEKEVELFFIDGSDNPADLFTKNLGRTLFLKFRSQL
GLEFYSS
>Copia-6_Pru#LTR/Copia 121-4213 via tfasty with Copia-36_Mad, 86.5% SW:4877, 1 frameshift and 1 stopcodon. [Prunus persica]
MSNMAGSSSSELLTPVFNGENYEFWSIRMKTILKSHGLWDLVEHGFDASDPKKEKGKEEGSKAAEEEKSTSAEILMKDAR
ALGLIQGAVSDQIFPKIVNEETSKGAWDILKQEFRGDKQVRSVKLQGLRREFEYTRMKDSESLSGYVAKLFDLINQMKSY
GEELPRERVVQKLLISLPRSYDSICSVIEHSKDLDTLEIQEVVASLKNFELRLDRHTENSTEKAFTSLNIESKSSKNGSS
SGGNKSQRNWKENGKNWNNKSNSNPKPNASNDGTKTPCKHCEKLHYGKCWFEGKPKCRGCGKFGHMVRDCHGNQPVQKVN
YANQVEVTGTLFYACNAVTGVKLNNSWYVDSGCSNHMAGDERLLIDIRRDVTSKVKMGTGETVQVAGKGTLVIETKTGRK
HTRSDVGAGLEENLLSVGQMMEHGYCLVFGKGMVTIFDDWSLQNPIAKVPMTSNRCFSLTMVPATQLVLRASVTHSLQTW
HKRLGHLNDQSIRMLANQDMVHGLPSLEKDFAVCEGCKLGKQHRDSFPAESTWRAQFPLELVHTDICGPMQIALMSENRY
FLLFIDDYTRMAWVYFLRNKSNAFECFKKFKAMTELQSGHKVKSLRSDRGGEFMSNEFLAYCSEAGIQRQLTVAYSPQQN
GVVERKNRTVIEMAKSMLHEKSLPYEFWAEAVHTAVYLLNRYPSKSLKKMTSFKAYTGRKPGIAHLKVFGCLCHVLIPSV
LRHKLEENSHKCIFVGYGLCEKGYRLYDPKTRKIILSRDVYFDEEASWKWENPSNADVRMSMPNGNQGTAETEQRVLDEQ
SQFLDTQMQMEEEIKPQGEEMLDETQRFDHTPHKWRSINDIMTxCNMCIIEPDSFEEADLDESWRSAMEAEFEMIEKNNT
WKLVDRPFDKPVIGVKWVYKVKLNLDGTVQKNKARLVAKGYSQKPGIDYNETFAPVARLDTIRTLIALAAQKEWNLFQLD
VKSAFLNGILKEEVYVEQPQGYVQESKETKVYRLNKALYGLKQAPRAWYDEIDAYFNTAGFKKSLSEATLYIKTSDTSGI
IIVSLYVDDIIYTGSCPKMLEEFKQDMMQHYEMTDLGLLHHFLGMGVEQTDKHIFIHQKKYAMKILEKFGMRDCKSVAIP
LVVNEKLCREDGSEAADENEFRQIVGSLLYLTATRPDVMFASSLLARFMHNPSKKHMGTAKRVLRYIQGTLDFGIEFAKG
KTATLIGYCDSDWAGSEDDMRSTSGYAFTLGSGMFSWDSIKQNTVALSTAKAEYVSAAEATSQAKWLRFVLEDFGEVQVE
GTPILCDNTSAIAMARNPVHHQKTRHISRKFHFIREAIQAKEIELVYCKTEDQIADILTKALPKDRFVRLRSLLGVKSAK
GLEG
>Copia-6_TMe#LTR/Copia 217-4417 via tfasty with Copia-8_TMe, 85.6% SW:4877, 4 frameshifts and 1 stopcodon. [Tuber melanosporum]
MSQILDLSQVGHVTFPLLGDLNFGPWRQSMSDQLKELDLWWIVSGREKAPDKESTEPADVLAYDKxLRKCFRIMAKIRNA
IEPHICAQYTSDDYDEDPKSLWDKLAEGYRKALGFELYYFQRSLFDCTLDAHGTTAQYVHEIDSIIECLREAGEVIKPPE
KTFYLLNGLPASWHEWRDLQATIIKPDQPDKLIAMIKAQESSMNRDREASSDNVLAVGGKSYGRKAGGYGEEVRSSSGSG
GIKRGEADKTLTCYYCQKKGHSKIDCRKLKADWAKGLARDNVNTLAQSTARRRRTITQPIFTAFTSTHFVSTSCQWLLDS
GCSTHVTGVKGQFTRYTPISPGAHRIRVANNTEIDALGEGDVLLSVWDRKHKKQQSLSIKGVLHVPECGKNSLLSVSQLR
RSGFYIDFNKEEGASLERDDGLEVELEEVNGLYVLHTETVRACGKALVVEIESNEGAMLVDKQVALWHFRLAHLGNDAVR
RLSLEENAIPRMPVVPRCICIGCVYGKMVRKPFPSVPSTLRASQPLELVHSDITGPVTPVSLGGAVYLLMFTDDYTRFKV
GYLIKRKSQALVCFQGYKAFAEKHHGKTIRKLHTDGGGEYTSNGFCHLLRQEGIEAQRTTPYTPQSNGVSERANRMIIGT
TRALLHAVSAPKKFWGEAAMTAIYVRNRLPTRALPEKETPYERWFGRKPTYDHLRVWGCVAYAQIPKETRKKLDHTARKC
MFVGYSSTTKQYRLYDPQKKQFLFSRDVEFAESESYYPAESTGKAYQRPYYAPPIDPWEEHLAWNDEFDEPDERIEADNG
GNDEEDDDDDDEDDDKVPGDVNPGRPEVVLGKKPRMLRELEAAGESAYWDMELGELPEVQEGHQTRSRRSGQSSSTMTEA
MVSTVYMVEAGPRNYKAAMESDEATQWKAAIDSECASVVKNKVLTFVDKLLAGKKAIPTKLILQRKLNPEGKTVRHKARL
VAQGFRQIQGLDFTETFAPVASLSSVRVVLAVAGARGYAIHQMDVVTAFLGSKMVEEVYVNLPPGVLGRPRLVRLNRSLY
SLKQSPRCWYTTIDSYLVSQLGFRRGRFDCCIYTHIDGTIVALYVDDLLIAGLQHNVDRLRRKLEMQFEMVDLGPVKHFL
KMVVTRDLKARKVYIMQEGYIWQVLERFGMGDCNPVNTPMDRDKPHPCKIDEKGCDKSLYQQLIGSLRWIAMGTRPDITF
LVSYLGRFSHDPSQHHWACAKRVLRYLAGTVHLRLSLGGGSIKHSEVLLSGFVDADFAGDTPSLKSTTGYMLHTGDAVIH
WHSKCQSITTTSTSDAEFIASTSAIQELIWFRHLATEVTGLGLPLSILYNDNRASLSTFHDVTYKPHLKHIGVRAHGIRE
VIEDEKEVVMEYCGTKEMAADSLTKPLVGETHALFVKLCGL
>Copia-7_Ano#LTR/Copia 210-4391  [Anolis carolinensis]
MEQNKETSWSLPKLQDNGENYLNWKRRLETMLKPAQLKVLQEGGPPEGAGEEAIQTWREDDRLVRCIIINSLSERVFQFV
RDASNAKEMMDYLQTNYSKGSEADIIFAYKGLFNSKMHSEDDLNDYLQQIRSLVDQLRSSGEPITERMCIGLVACGIHPS
YKSIITILRNTHRLESEQLTLKSITAELKSEYLERNGSDPKNNMQSESQSKSMALKAGHKFKLKNKVICNLCQKAGHLQR
DCWFAKNNQTSSTASHSRSQGSKPRAFNTQVRRQSQSSASENANERLGQHTSAKHANLVLPSDTAESEGINDFFGSLALH
VTNKLVNEKDILLDSGATDHYFCHLDYFIEIEKEKSTVKGIGCQKVNCTGLGKVNLACADSGINLTLSNVYYSKDIGTNL
ISVAKLMRHGCKIVFENGLCKVLKDGKLVLKAEEYHGIFKVMFEPKFSGLALPECEKRNCARLWHERFGHANEKYVWNAK
EVCRDMEVNSCCKEICETCIKAKAGAPNVPKDKEFEAQRPLQVISSDVCGPMSTSLGGSLYFVVFKDSFSGYTKVYFMKH
KNELFNKLKEYLAMVENQFQRMPETLRTDNGGEFCNKAVDDLLRKYGIRRQYSLPYFPHQNGIAERKNRSLIIMAKSMIY
HAGIQRKFWAEAINTACYLQNRMPNAKSHVTPYELWFGHSPSVKHLRVFGSKAYVYIPREKRSGKFDCSSKECLLVGYSD
EHKSYRLYDPEKNIIFVGKTVYIDERVGRNLQPPVDEPLLRNDSDDLTCGLQSGNEPIAPSAGKVLPSLVRRADQRNEPT
PPSGETLTSEVEGPDERIDPHSGMAEEHKWHPQGPDESAETPDGQNEQLPRRSQRTNCGVPPQRFAYLTNEAELQEPSSW
NQMLKFPEDEKEKWLTAASDEIESLHKNKTWTLVPPPENRNVVGCKWIFKLKRDENGQIQRYKARLVAKGYSQQYGEDYD
EVFAPVVKHTTLRTLLAIAASRKMNVEHLDVATAFLHGELEEEIFMQQPPGFEDKAHKGYVCKLQRSLYGLKQAAKCWNQ
KLNQMLIEKGFAQGKADPCLYSRFKNNRWTYVLAYVDDIVCCFQQKSDFDDLVQHLSRTVEIKQLGNLSHYLGIQVEREE
DGSFLLNQRQKITDLLKHLGLLEANTVTTPMEVNYWKNTSESEPLSDNTLYREAIGKMLYISRITRPDISAAVGILCRKT
SKPTKYDLIAIKRVARYLKGTLNFKLRLQATSNPTLTGYLDADWANDITDRKSTSGYLFFYGDALIDWTTQKQKVVASSS
TEAEYVSASEACKQLKWLHMMLFDFGIEEPTPIQVFEDNQGCLKYTQTEKISTLLKHIDTRYHIVKNAHEEGFMRLEFCR
SEDMIADILTKPLPRHAHDKLKKMLNLMDMSSPG
>Copia-7_AA#LTR/Copia 74-4197 via tfasty with Copia-106_AA, 89.1% SW:5257, 1 frameshift. [Aedes aegypti]
MSDEKLWLFNGENFGNWKFRIEVLMEDRGLLECLETAIADQEYAEELPDDTAEERQRKKKLLDERMAKDRRCKNLLIHRI
AEDQLEYAKEQKTAKDIWDELKNNFERIGIAGKLILKKQFQELRLAEGGDVKAFLLRFEKILRELRTAEVNMQEEDVVCQ
LLLALPGSYGALITALETTIQPQQLTLEYVKKRLLDEQVKRLNSSPAGESENSGDSAFSGKKLGIKCFGCGKYGHKRAEC
PENRPAEDSSSTRLRKKNGKFSRKTKFGASVAEEMTFVATETMECLSVATVSKKNVDWILDSGATDHMVKSKTFFDEMHA
LDNKVRIAVAKSGQAVFAEYAGTVKVNMLIDGRKVPAVVKDVLYVPQLACNLFSVRRLEDNGMMVRISNGTVKVLKNGSV
VATGRRAGQLYKMDIELRDVAYSASGGECEAGAMASKKDGFDLWHRRFGHLGTANMKTLWKHGMVETTTKISDWPERCVC
EVCLQGKQSRQPFEDGGERRASRPLEIIHSDVCGPFTQKTWDKKRSFVTFIDDFSHFTVVYLLESKDEVQSKFEEYCARV
TAFFGTRVSRLRCDNGGEYTGKSFRKYCRTQGINVEATIPYSPQQNGVAERMNRTLLEKARSMVHEAGLHKSMWGEAVLT
AAYLCNRSPTSALKEKKTPYEIWYGRKPNIDKMRVFGSVAHTWVPKEKRDKLDPKSEKNVMVGYTANGYRIWDPRKRRVT
VARDVVFDEQKDGSVAAPNNAKQVLWRNDDTEDCEDEPGAPVVGQPNIAPQPEKAPPDVNAEHITDDDEDADTALPSQPE
RVDCPAEATTRRSERERKLPGKFLDFITGSRASTAAECSTGVSEDHDDATMAFALNAETFVENLPTTIDGLRRRSDWQHW
KKAIISEMESLQKNETWELVPKPPNKNIVDCKWVFKIKRDEAGNVNRYKARLVAKGFSQRKGYDYDETYAPVAKGTTVRV
LLAVANQMGYHLHQMDVKTAFLNGQLKEEIFMRQPEGFESGDPSLVCHLKKSLYGLKQAPRSWNSEFHNFVIQLGFQRSN
LDSCLYWWSDGKIVVYLLLYVDDIILVSNQMDVIAEMKKKLSTRFEMTDVGLLKMFLGLKIDRDQAKGTMKISQPKYVDD
LLQRFGMANCKPAPTPLEPNLKLERREDEAVTSEPYRELIGCLTYLALSSRPDISAAVNFFSRYQSAPTSEHWSHLKRIL
RYLKGTVNHGLAFRRNEGSAPLVGYADADWGNGPADRRSISGNVFQVFDGTFSWMTRKQSSVALSSTEAEYVSLSHAVCE
AIWLRNLFLELGIKLDQPVVLHEDNQSCICIAQEPRDHKRMKHVDIRYNFIREKLQDGTFKIQNIPTNEQLADLFTKGLS
RGPFEMLRSKLGLFG
>Copia9_TP_gagpol#LTR/Copia 3045-7817 [Thalassiosira]
HEVGIAPEGLSPPVLTSTLHTNNPSIYASNMDPPRHALYSISASTTDTTVDRPPAEPPPPKQPDPIQTSKLTATPASTMQ
SLESPPPGSIFQQTPRREASIPYIMDSARVNFGWMHDQSTSLTCRGMDSIIYNEHEPCFLGLANDNESEWATPRVLTTYQ
SQQNLVGGTHQPLPRVIRDAMWDPGANICMTPYLHLLTNIVKITPFAVGVAVGPSSFPHKEVSTSMCTMKGDLMLPLVDG
SYHAQECYYNPQATDTLVSPQAICEDSHDRFSQWSMEANTTGQPGRITFKSAQGDALMSIPLHLKNGLWHCKNENFLQRS
PNPIPCTPMIGMEQVQEPLEEIEFSPHAAMNRRRPTSKAKQLEADLWSARLGFPSDWQLDVLPLNAAGLPTKFCPHPFSH
YEWKTSARMHRNPRGKDPERVIERGMRFYLDYGFMRASATDYSRPSKATDRVVQSFDGYNCYLLIVDEVSHHVWVFLCQS
KEPPVEIVSDFLLVYGHKRGGVLRTDQGGELARSAKFREAMRIRNFELDDGPTAAFPQHSAFYAIEPTGAGAASQNGGVE
KWNDTLATTVRALLYSAGLPPKYWSVALVHAVYLHNRRVHKSIQRTPFEAWYGLKPNLRHLKVFGSRVCVKVPATRRAKL
DRGDFRGIFLGYTATNSNIRYLDLDSGLVKSSADAIFDEAWYTQSRRPPAAQLLYDLGVMNDVEDSPGSMMYPPAPTVYP
PLPSKSQILTKPLMASKLPLPLREYSPSIVSAKAAKSSAVWNSIIAHHDESPPIHSIIEEYGINKTDMAMVYISPDPYNS
AFEEHLDIRDFTNERHPTAGMSLIEQDGGRLILAHMMPGTPAAKIPYWRSRLKQAWLISVNGIEVHTRADVQEAIASAIL
QKKTNCTLLFAHPEIKHGLTNQGIPQVNMDQLNPRLLLRPSVQDLINNMPTFDSNIDDTSIPLNNNDILWQPRACVTRGN
SEDDVFTYRTRAMKLTRGKLRQQKDWDEWHRAEWTQLDQYEDQGMFGDPVRINDERLIFYLVWTYVEKVLDKRKKARCTC
DGSTRAGKVRILDHTYANCVDQTGARIFYAASAAENLLMFGADVSNAFGEAPSPKQGFYIRPDKAFNEWWTIHKQRPPIP
PGHVIPILKAMQGHPESPRLWERHVDGILRKALNFKPTIHEPCLYSGAVEGERVLFLRQVDDFNVAAPTERIANIVYDTI
DEHLTMPLKRMGLVTLFNGMDITQSRHYIKLHCTTYIERICEKYLNDWLKDAKISADRPLPFPTKDEFLKQLLEEVGDPD
LTKQAKLRTQHNVGYRNLMGEIIYAMVTCRPDISYHTVKLAQSSARPADIHYRAAKSVLRYLYATRNDGIHYWRSKPNDI
LNDLPLPAISSNISDLMTDGRPVHDPLHPHGFVDSDWATCPRTRRSFTGICFCLAGGTIAYKTKLQPTVAMSSTEAEFMA
ASDGGKMSLYIRSVLYDLGIPQWAAHELYEDNDACNAMANAGKPTTRTRHMDIRYHALRDWVERDLIVLERVPTSLNQAD
HFTKSLPRILFHRHVDYILGHVPPPHSPLHDNIASIGIQTEYHPPVTTTKTCTTTRTTPYHPYVSVLNNE
>Copia6-PTR#LTR/Copia 97-4179 (2 stopcodons) [Populus trichocarpa]
MFVRFTGKNYTAWAFQLEIFLKGKELWGYIDDSNKGDLAVEGSVVAKAAWAAKDAQIMSWILSSMESHLILSLLPHRSAK
AMWDHLTQVYNQDNNARRFQLELAIANYTQGNLSIQDYYSGFLTLWNDYSDLVTAKISAEGVLAVQQVHKISQRDQFMMK
LRSEYELVRASLVNRDPVPSLDACFGELLREEQRLHTQTIMEQTRVAPVAYVAYRKGKDHDMSKTQSYSCKYGHIAPHCP
NKFCNYCKQPGHIIKECSIRPPRINKAYHTAVTNAGPSAPQPLVGSPISQPPAHLLTKEMVQEMIVSAFSTLGLQGTGSS
TLPWILDSGASNHMTNSFGGLRNIRKYYGSSHIQTANGNALPIVAVGDIPPLKDIFVSPKLAVNLASVGQFVDNNCDVSF
SKHGCIVQDQMSGQLVAKGPKHGRLFFIQFHVPRTLVPSSVLSLFCTAPKVSNEVWHKRLGHPNPRILSHLLKSRLINTT
MHSSSSMFLDCVTCKLGKSKVLPFPSEGSRATNLFEIVHSDVWGISPILSHARYKYFVTFIDDYSRYTxVYFLRNKSEVF
SMFKLFLVLVNTQFSATVKTLRSDSGGEYMSNDFQSFLQSKGIISQCSCSYTPQQNGVAERKNRHLLDVVRTLLIENSVP
PKFWVEALITATYLINRLPSQVLGLESPYFRLHHCPPIYTNLHTFGCVCFMHLPPPHRNKLSAQSIRCAFLGYSITQKGY
LCFDPHTNRVHVSRNVIFFENQCFFPLPSSSATSLASLPSFDDSSHLQSAQVDRFKPHMVYKRRLPVLPPSASVLSSAPP
LHPSVASEVTVLAPLRRSSRVSVPPAKYGFNSFVAHNSTAALSATLSSIAIPTGYSxAAKEPCWQQAMQEELHALEANQT
WDIVDCPSGVTPLRCRWVYSVKIKVDGSLDRYKARLVALGNHQKYRVHYEETFAPVAKMGTIRTILAIAASKHWCLHQLD
VKNAFLHGDLTEDIYMRPPAGLFSTPTSAVCKLRRSLYGLKQAPRAWYERFTSILLQFDFLKSKYDASLFLRKTAHGVVF
LLVYVDDIVITGTDLALIDQLKQHLQKSFHMKDLGPLTYFLGLEIHAGSHGIFLSQHKYAMDLVTTAGLQNSPPLDTPME
INLKLRKDEGDLLSDPAAYRTLVGSLIYLTNTRPDISYAVQQVSQFMASPRHLHMVAVTRIIRYVHGTIRRGLCYPAGTS
LDLIAYSDADYAGCSDTRCSTTGWCMFLGPALISWKSKKQDRVSKSSTESEYRAMSQSCSEIIWLHGLLAELGFQQCTPT
PLFADNTSAIHITANPIFHERTKHIEVDCHFIRDAFAAQTISLPHVSSNLQVADVFTKTLTRQRHHYLTTKLMLMDKPAS
I
>Copia16-PTR#LTR/Copia 148-4294 via tfasty with ATCopia31_1-4050, 2 frameshifts [Populus trichocarpa]
MSEGNFVQPSIPKFNGHYDHWSMLMENFFRSKEYWSLIEQGVPTTVEGAPLTETQMKVIQDQKLKDLKAKNYLFQAIDRS
LLETILKKDSAKDIWDSLKQKYQGTARVKRAQLQALRKEWEILQMKVGESVNDYFARTLTIANKKRIHGEQMNDVVVIEK
ILRSMTPKFDYVVCAIEESNNVEVMSIDELQSSLLVHEQRMNYHTVAEEHALKITYEANFEGRGRGRGVYRGRGRGRHRP
SFDKSTVECYNCHDLGHFQYECPKKGLRANFADTSEEMLLMAYIEEQQISTAEVWFLDSGCSNHMCGKKELFSDLDETFR
ETVKLGNNSCMTVMGKGNIRIRVNENTQVFTGVFYVPELKSNLLSIGQLQEKGLAILIKNGKCKVYHPNRGLIIEIKMSS
NRMFVLLDQRPSEEQICYSSLTDDSAGIWHRRYGHLSYDGLKTLQQKNMVQGLPHIKPPVILCEECMLGKQARDPFPKSS
TWRATRILQLVHSDICGPIKPISNSNKRYFISFIDDFSRKVWVYFLTEKSEAFYTFKRFKNLVEKETGVYLSALRTDRGG
EFTSNEFNNFCNEHGIRRQLTAAYTPQQNGVAERKNRTIMNMVRSMLNEKKFPKNFWPEAVNWSVHLLNRSPTLAVKNVT
PEEAWSHIKPSVSYFRIFGCTAYVHIPDAKRTKLDNKNLKCVFLGVSGEAKAYRLFDPLSKTIIISRDVKFEEDGHWDWD
HGYAEAVMADLDWDDVHVHALDSHGDNAILESDSDVAATSTHPINTHEGVEVAVADEATAEESVPESRVNTGRSDAGKSV
HGGVHAESSVNVGRRVHDGVHAETILPTAIESNTEEGRVRRPPRWMQDYIGSEQLSDTDDFAFFALYADNDPLSYTEAVK
SDIWQRAMEAELNAIERNDTWELTMLPAGGKVVGVKWIFKTKLNENGEVDKHKARLVAKGYTQQHGIDYAEVFAPVARLD
TIRLVISIAAQKGWVIYQLDVKSAFLHGELNEEVYVAQPPGYEKKGKEQMVYKLEKALYGLKQAPRAWYSRIESYFADQG
FKKCPYEHTLFIKTGDGGNILIVCLYVDDLIFTGNDVNMFDEFKQSMMNEFDMTDLGRMKYFLGIEVLQSSNGIFVGQKK
YAQSILKKFKMDGCNSVNIPIVPGMKLCKDHGGSRIDSTLYKQIVGSLMYLTSTRPDMMFVVSLLSRYMESPTELHLMAA
KRVFRYLKGTVSYGIFYKRGGLEGLNVYSDSDYAGDIEDRKSTSGYVFMLNSGVVSWSSKKQPIVTLSTTEAEFIAVTSC
ACQAIWLRRILQQLGHNQEGPTTILCDNSSAIKLCKNSVLHGRSKHIDVRFHFIRELTSMGIIEVTHCPTQSQVADIMTK
PLKTDAFVKLRGLMGVCSVSSVN
>Copia47-PTR#LTR/Copia 241-4240 via tfasty with LCCopia1, 2 frameshifts.[Populus trichocarpa]
MSNNSDLFGVRFTGKNYSAWEFQFQVFVTGKELWGHVDGSDPTPHATKLSLWKVKDARVMSWILGSVDPLIILNLRPYKT
ARTMWEYLKKVYYQDNNARHFQLENDISNYSQSNLSIQEYYSGFQNLWAEYTDIIYAQIPAESLSVVQKVHEQSKRDQFL
MKLSSEFEITRSNFMNRAPFPSLDGCFGELLREEQRILTQSSLKQDNPAAVAFAVQGRGRGRNMGNVQCYSCKEYGHIAN
NCRKKFCNYCKQQGHIIKECPTRPQNRKIQAFPAVVSESSSVTVATSSLTPEMVQQMIITALSALGLQGNTSNSQLWLAD
SAASNHMTNSSSMLKNVREYHGSSHIQVANGGHIPITKIGDIDPTFTNIFVSPELSTSLISVGQLVDDNCDVHFSRNGCL
VQDQVSGKVIAKGPKVGRLFPLHFSIPSCLSFACSNVLNKSEVWHKRLGHPNSVVLSRLLNSGLLGNKDKFSSFDALIDC
STCKLGKSKTLPFPSHGSRATKCFDIIHSDVWGPSPILSHAHSKYFVTFIDDYSRFTWVYFLRSKSEVLSVFKTFLAYVE
TQFSTGIKVLRSDSGGEYMSRDFHDLLLQKGIISHRSCPYTPQQNGVVERKNRHLLDVTRTLLLDSSVPSKFWVEALSTA
VYLINRLPSQVLNFDSPYYRLYHEAPSYSDLHTFGCVCFVHLPSNERHKLSAQSAKCAFLGYSISHKGFVCYDLSCSKFR
VSRNVVFFENQYFFPTATPAASSLHAPILPHFEDVSSFERFKPGIMYERRRPLLALPETNPPSDTASETASVPSPLQPAL
RRSTRVSYPPDRFGFSATLSNIIVPSCYSQAVQHECWQTAMQEELCALQDNHTWDLVSCPLSVKPIGCKWVYSIKLRSDG
TLDRYKARLVALGNRQEYGVDYKETFAPVAKMTTVRTIIAIAASQGWPLHQMDVTNAFLHGDLKEDIYMAPPPGLVLSSK
SVVCKLKRSLYGLKQAPRAWFDKFRTILLRFSFVQSQYDSSLFLCTTSTGYVFLLVYVDDIVITGTDSTLISKLQQHLRD
SFHMKDLGSLTYFLGLEVHSSPSGIYVHQQKYTHDLIALAGLQASSPVDTPLEVNVKFQSDDGDLLPNPSLYRQLVGSLN
YLTITRPDISFAVQQVSQFMQSPRHLHLAAVRRIIRYLLGSSNRGLFYPAGSPISLVAYSDADWAGCPDTRRSVTGWCMF
LGDSLISWKSKKQDRVSKSSTESEYRAMSVACSEIVWLRGLLAEMGFHQTTPTLLHADNTSAIQIATNPVFHERTKHIEV
DCHSIREAVDAHVISLPHISTDLQIADVFTKSMTRQRHQFLVGKLMLINHPASI
>Copia18-PTR#LTR/Copia 77-4125 via tfasty with ATCopia23_39-4058, 1 frameshift and 1 stopcodon [Populus trichocarpa]
MTTEGSFVQPTIPRFNGHYDHWSMLMENFLRSKEMWELVEIGYTEASGSMQTDGQQKKNDEMKLKDLKVKNYLFQAIDRT
VLDTILKKDTAKNIWDAMKKKFEGNARVKRSHLQALRREFETLEMRSGEGVTEYFSRVMTVANKMRIYGEDMQDVKVVEK
ILRSLTEKFNYVVCSIEESKDIDALTVDELQSSLIVHEQKFVRHKSEEQALKVTYEGGRGRGRISYRGRGRGRGRTDFNK
ATIQCYRCHxLGHFQYECPTVNKESLYAELDEEEEMLLMAYVEKHQARREDAWFLDSGCSNHMCGYKAMFSDLNLEFRHS
VKLGNNTRMNVMGKGSVKILLTGINHVIAEVYYVPDLRNNLLSIGQLQERGLDILFKGGTCKIFHPKRGLIIQTTISINR
MFILLPDSQSSSQEQADQCFHTGTQNLCHLWHQRYGHLSYKGLRTLSYRNMVRGLPQLSTSNVTCTDCLKGKQHRDPIPK
KSTWRASQKLELIHADICGPITPTSNSNKRYILLFTDDYSRKTWVYFLVEKSEAFSSFKSFKSMAEKQTGLFVKCLRTDR
GGEFISNEFNEFCKHNGIKRQMTTAYTPQQNGIAERKNRTVMNMVRSMLSDKNIPKTFWAEAVNWAVYVLNRCPTLAVRD
VTPEEAWSEMKPSVDHFRVFGCIAHVHVPEERRTKLDNRSITCVLLGVSEESKGYRLFDPVAKKIIVSRDVIFEEEKLWK
WGESCDQQSVENLDWGDEDEERARENRNRGDGIDDAEQPGGNNCREGCREGDEEACDTGVETINYREGDERVRDSEIMQL
EERSSRQLRGRQPPTWMGDYVSGEGLYEDETNMALEVSTDPSVYEEAVKSTDWRMAMNSEIESIEKNKTWTLTELPAGTK
KIGVKWVYKTKYDENGKIDKYKARLVAKGYSQKYGVDYTKVFAPVARMDTVRMIIALAAHKNWMISQLDVKSAFLHGELS
EDVYVEQPRGNEKKGSEHLVYKLHKALYGLKQAPRAWFSRIEAHFIGEGFQRCESEQTLFTRRTQEGRIIIVSIYVNDLI
FTGNDEVMLSDFKNSMVREFDMTDLGKMRFFLGIEVLQKSDGIYICQRKYALEVLRRFGMMESNSVGSPIVPGFKISINE
DGNIVDETYYKQLVGSLMYLTATRPDMMFVICLISRYMTRPMEIHLQAAKRALRYLKGTVNYGIHYKRGGKEELLAFTDS
DYAGDMEDRKSTSGNVFLMGSSAVSWCSKKQPIVTLSTTEAEFVAAAVCACQGVWMKRILKELGHSDEGCTTIMCDNSST
IKLSKNPVMHGRSKHIDVRFHFLRNLTKEGTVELIHCGSQDQIADIMTKPLKLEVFQKLRKLLGVCEILP
>Copia5_AG#LTR/Copia 76-4014 [Anopheles genus]
MALPSSSNSSSSFVGSTSIPSIERLLGRENWTSWKFAAKTFLQLEGLWEVVKPVKKEDGTFETVDEKKDLQARLKLILLL
DPTIYVHIEDAESARSAWDKLEMAFEDKGLSRQIGLLHKLIKSDLDTCGSMNSYVNQVISTANQLNAIGFKLPDLWVGMI
LLAGLPEEYRPMILAMENSGVAITGDYVKTKLLQERPLLRNENVQALATNKRREVFKPKQKPSSSKGPQCRKCGRYGHIA
KFCKDDRKGGTTLCTVLSTFGNSEANEWILDSAAYAHMTSNKDLLSNLQNATGKVVAANGGTLDIVARGTAIIQPKCMEE
IVTISDVKLIPGLTSNLLSVSRMVEKGYTVQFNTKGCKVYNPSGKLVLTGIHNNNQFKVEQVANNMQEALSCNTAESFEL
WHKRMGHLGAVNLKKLAGGLATGITLKNMDGADCRVCPLGKHSKLPFPKKGSRAENVLDLVHSDINGPMETHSLGGHRYY
ITFIDDKTRRIFVYFLKTKSEVEVFEAFKRFHAMAERQSGRKLKTLRTDNGKEYMNKSLTSFLQKEGIRHETSNGYTPQQ
NGLAERANRTIVEMARCLLFEGNMTKGFWAEAVSTAVYLINRSPTRGHNLTPEEAWNGRKPDLSHLRVFGTKAMVMIPKE
KRRKWDPKSHECVLTGFDEETKGYRLYDHKKKQTIISREVIFLDEGCSSNVTVTAMQEPRRTFVRLDIEETTSIQPVQIP
VPNFAPDAGSDSTLEENDAETDGELDESTTDDENNTSTETMVQSEDDSSDFLGFSGSDVDGFVAVASGMYSGTYADPVSH
QEALARDDSKEWGTAMQEEYNALMENKTWTLTSLPKGRQAIKCKWVYRTKCDSSGNLTRYKARLVVKGFSQRKGEDYDET
YAPVVRYCSLRYLFALAIKHDLMIDQMDAVTAFLQGDLDEDIYMEQPPCFVDGQRKTLVCKLNKAIYGLKQASRVWNNKL
DAALQRFGLIPTQYDPCVYVGSEGGKIIIVAIYVDDMMIFSNDVAWKKQLKKHLCSCFRMKDLGAAQHCLGIRIQRTKET
IKLDQEIYIESILKRFNMDKCKPVAVPMNNSEKLTKEESPKSNNETAAMKDVPYQEAVGCLMYLAQSTRPDILYAVNMLS
RFNKNPGQKHWNGVKHVMRYLRGTSNFKLVYKKNVDSKIIGYCDADWGSDPDERKSTTGNIFMAQGGAISWMCKKQPTVA
LSTCEAEYMSVSAAVQEASWWRGLSAKLANADEVIEIRCDNQSCIAIAKNGGYHPRTKHIDIRHHFIKDALSRGIVTLEY
VSTEDQIADGLTKPLQRTKFEISRELMGISEA
>Copia1_Dmoj#LTR/Copia 121-4013 via tfasty with Copia1_DM, 1 frameshift. [Drosophila mojavensis]
MSSMYNIEKLDDSNYDCWSVMVESVLVHQNLWAVVSNEFVKPEDETSEAFKTWKRENDKAKAVLILSMSASQVNYVKRCI
YAKDVWNELKKLHQSSGPVRRVTLFKQLLNKKMAEGENLQTYIMEFSNIVENLSAIGITLQEELIVIMLLASLPSSFENF
VVALEARDELPNFSSIKCKLTEENERRKISDQKEATQSFSARQTGQGGRERGRNETTDRRRYFKCYKCGQQGHYAANCTT
KEANEKYGKERRGKGNEKSERENGKNRDAHSNQRSFAGMMGNYRMSKDAWVIDSGATSHMCARRDLFDNFEQHNESIELA
GNNFTTACGRGTVVINSLCGFEITLKDVLFVPGLQCNFISVGKAVANGCSVEFNSGFCKVFDSENIVILIAKRISGLFLC
ETKNNEKLCLSKGADDIKKWHARYGHLNVQSLRELKSKDMVRGLAVSSDIKHFDCINCLKSKCHARPFEDSKNRSKQICE
LIHSDVCGPIRQVSNGGARYFLTMIDDKSRYIHVYFMKQKSEVTKIFKEHVTMLERQKGQKVKIIRSDNGTEYVNKDFDE
YIKLAGIKRQLSAPYTPQQNGVAERCNRTLVEMARVMLNSAALNESFWAEAVACAAYLRNRSPTKALDGITPFEAFTGLK
PVVKHLRVFGCTAIALEKGPKKKFQEKGKEYTMVGYSESSKAYRLFDKNTGDVKISRDVYFIEDSVRESTEKASATIMVE
DDNADQEGIQEDHSSTEEQPDDDADEAEQPRRGPGRPKIVRTGLKGRPTKQYNMANVMLSNNIKVPLTVQQAQSSPQADE
WRAAMQEEYNALMCNDTWDLVQLPHGQKPIGCKWVFTLKTNSSGEVERYKARLVAKGCGQRYGLDFKETYSPVVRYSTIR
CILAMAAEYELYVHQLDVSTAYLNGILEEDIYMQQPELYDDHSGCVLKLKRSLYGLKQAGRVWNTKLDGVLTKMGYRACE
SEPCLYTKCSDDQTINLIAVYVDDMLLACSSMGEMLAAKKAISSEFQVVDKGQVTNFLGFEIQREGRTGAIRVSQRKHIV
GLLNEMGMSNCRTTSTPLEANYPVNCERESCKRVDITEYQSVIGSLMYIALCTRPDILHSVCKLAQRNSNPHSEHLAAAK
QVLRYLHTTADLALVYEKTGEEIAGYADADWAGDSTDRKSFTGYAFMWGGSAFSWTSKKQKSVALSSTEAEYMALSDAAK
EAIYLRKLISEMNPYFKRNCIRIYEDNVSALNLVKNPIYHARSKHIDTKYHHIRNCYENKLIDLSYCPSNEMIADVLTKN
LSRVKHMKCIALIGLMKI
>Copia1_CR#LTR/Copia 435-5318 (1 frameshift) [Chlamydomonas]
MAGKLIKPSQVSELRAGDKDAFWDWVSNLKIVLKNNRMLDVVMPGIGVDGNGNFDAEDLKLDADARDFIESKVDSTLRLA
LTNAGTAKAAYDTIYAKFNPATVARKAELSRQLNMLRMQRGESVAVYCARARKLAHELLELEIIMKELTEGEDILAASES
SETNLVMWVLTGLPESWENFKDRMMDSASSTGDLGVTMDQLQSKMENREQRYQDGSGVGVSASAVAAIQVPPAPIYPAAQ
SQEDQVAVIAAALNRLGFQPRGAGHGGNNGGGDRPRKDMLRVKCYRCKQFGHYADKCPQGQQQQGQLGLGGGAGGSGSGQ
VPPLVAALAQLQGLYAYMGGAPQKAAPMMQQPAQTPQVAAMAAAAPAVAAPAAAAAAAATGVAPQQGGAERVRTYRMFMM
MAQSQAQTLPHGPSDWLLDSGCSSPVSYDPSDLFDLRPLLEPTFVQVADGRPCAATHIGNMILRTSLGNAEADAMMKDVL
LVPELGVKALSISAMARAGVETTMGNAGAVCKSRDGEVVMRGRLCPRSGVYVISGRALQPSAEQWAQFQQxRGDPSPPPH
QEDQAVGGAAGCWAVVDRSGELWRELQAARSRADMLAVDRIHRCFGHLGHTRMLQLPDVVSGLPVTRSQIQLWAATRGRC
DACGLGKSARRRLSRQDQPRGATAPLQLVHTDVCGPLPAAACGSKYIVTVVDEYSKYSVLRFTRDRETVPYVLQSVLVLM
ETQCAPLRVKEIRSDRGGEYVGSVLADFCAAKGILQNFSAPYTPQLNGVAERLNQSLQRAGRAMLVDSKLDVKYWRLAAE
AANAVRLRSPVRGLAATPHQLFTGVKPDASHMHVFGSKVYVHTPEPQRDHKFSPTGRAGRFIGWEPDGNYRVLVDSKLVV
SRDVVFDEDRAANAGEPATATAAASAPPLDLRVDSSDSDNDSPPAEAAGVSGGPPAGQSNEQGRRNTSQQGAREQREAAP
SAQELHVERQPGSGEAAAEASTSAVASEPHARRRRRRKPLKPPAQGGAAAGEATAAGGAPNLAAATPPDKAERGGGVPAT
ALPPQPRRSDRSRAAPVRLGFSAIVVVRGALVQVLAAAVKGPVGQDLPGGDEPTFEQAKQRPDWPLWQAAIQEELDSLRS
LEVFQPAHPPAGAKALAVRWVLKVKRDANGKAARWKARLVVKGYQQRPGRDFGETFAPTGRLASLRFLLAIVAARNLELH
QIDVKTAFLHGRVEEEIYADLPPGCDLGDSELKLLLRKSLYGLRQAPRAWYGKLKETLERMGFVESDADPGLFVLWAEQG
ILFVLVHVDDMLMAAELLPLMDSTKKALNGHFAITDLGEASFYLGMRIDRDRANRTIKLSQERYTLDLLEAHGMSESKPV
DTPMTVGTPLMRADKGGGELLGLGEAQRYRGIVGSLLYLANCTRPEISLAVGTLARFMAEPTEEHLKAAKRVLRYLKGTP
GTGLVYGGHGLVLAGYAEPPSDAELSAESAVELKLAGYADADYAGCPNTRRSTTGYVFTLNGAAISWQSKLQPTVACSTV
EAEYMAAGSATREALWLRKLGGDFGVLGSGPTVLLGDNQGAISLTRNPLHSAQTKHIDVMYHFVRERVAMGDLAVEYVPT
SEMVADVLTKPLDAVKFKKFRGELGLK
>Copia1_TP#LTR/Copia 89-4609 [Thalassiosira]
MSTEEKSIRVITFSGKKKDYRVWSIKFTARSHKKGYKSILDGKETVPTESEYENAIAIDEDKRNKKDCKVIKCYEANAVA
YDDLILSIDGLSSTGKVAFNIVETAKSTDYPEGNARLAWLHLANKYAPKTGTSYIQLMRSFVNSKLDLGTDPDDWITELE
SLRTEMDKVKISGKTDMSDVDLIIHIIASVPEEYEVAVSDLEDRLTSGADKIDIEIVREKLSARFDRLKKNDVKDAVNET
ALSALGVLLEDEDLHPDELAAFVKQFKGRCNKCGTYGHKAATCPSVKNDGGDPGTSALDDAKPKALTYLRGKKCFLCGKY
GHLKSDCKLNKKQSAEQANMAIGESDDDNESIDELGLYAFGLEVTKDDLAFHVIDGVEYPSFTDNTWIGDTGSSCHIVND
DTGLYDITPISEVVGGIGGQSIRATKMGRLNVVIKQADGTQVKRVLYPVKYCLGATERIWSLNQEVNDARLSTDDKHRYV
LTYNDEQQTKIVFDRRAKTNNGWVPGVEVIQDTAEIGMFTKQTKTINEYHEELGHPNMVATRSTAKARHENVVGPIQQCE
DCAVGKAHQKRVPKQPVARAKNPGERLFLDISHPKQQSIGGSNDWILVADDATDNCWSWFTRRKDQLSDVIVPFIIDLKA
SYGITVKCIRCDNSGENHSLERRCNQEGLGIKFEYTAPNTPQQNGRVERKFQTLYGRVRAMLVGSGIKQPLRNKLWAEAA
NTATMLDNELVKEGETLTSHQKFFGKGVKSPIPIGSTKKFGEMCIVSNREKIMSKLADRGKPCIWLGYAANHAQCTYRVY
NPKTRRVILTRDVVFLRKSYGEWNADKDEATAVKPTTLPDDDDSDDEEEPININHHPIVSESEDEEPDTFFSAPSHESTD
DNEESDISEGDTSEAENQTNPKLLREMRKLDASYNPDAHKVIESTKLNEEPIDNGTGRVSDVEGTDELSNLLIATDELSN
LLMDITKVASSEKPTLLQLPYDEPKTWEQAWYHPDPYQRKMWRAAIMKEWNDMKKRNVWIVQRRCDMPKDRRCVKSKWVF
KLKRNGVFRARIVACGYSQIPGVDFEESYSPVMNDITLRILLVIWIVMTLKAIIADVETAFLYGKLLEVIFMECPPGMMG
TTKDDVLRLLMCIYGLVQAAARYYAYMAKTLRSMGFKGGDVDPCLFVKWINGRVCFVGLYVDDNLIIGHPELVDDTIKQL
RQKGLILKISDLDDYLSCHIVLSKDKRRAWLGQPHLIASIVNKFGSQIKGLRQYKTPGTPGLSLVRDVERVNPLSTEKHS
MYRSGVGLLGYLVKHSRPDLANMQRELSKSLDCPTEASYKELLRGLKYVVDTKEFGLKIEPSLSNVNEPWRIVVYSDSDY
ATDPDTRRSTSGYILYLRDVPIAWKSKAQQSVSLSSTEAEWIALSEAVKEIKFVVNLLESMKIKVNYPIKCRVDNIGAIF
MSQNVTTTSRAKHIDIRTKFVREYVEDGKIKIVFVRSGDNDSDIMTKNVQGDLHDKHSKKLIGKQH
>Copia5-NVi#LTR/Copia 135-4135 via tfasty with Copia3_XT, 1 frameshift and 1 stopcodon.  [Nasonia vitripennis]
MAETSDLKNISKFNGQNYQLWKFQMRAAFIAHDLLEIVEGTDKKPASTTTNAADVFKWSKKDAKAMFFLSDAMEYSQLEY
LITCSTSNNYRMSPGDSIPQHIARVENLASQLKDIDQAISDTMIMAKILSTLPAKYNAFVSAWESVVADDQTLHNLRERL
LREESRMTTMDNLDNALATLSLPKEKNQGHRPQSGNNANSNQRKKSITCDFCKKPNHIARFCFARKRSKNSNVNSNGNDQ
NNSRKQMDGDSANLTAFTVTKNDSNSESASANVAENPAWLSAIGDRDSWILDSGASRHISCCREWFRELRMTGQDEFVYL
GDETRLKVEGYGDVYIKRFINNAWLDGVIRNVLYIPSLARNLLSSGVCTFDGHSIVFDREQANIFSRENTLIARGIKxRN
NLIKMLFIPESRLDANYTSVAPLSLWHERMGHINCNRIKHMLNNDVVSGVLVSDKKDFFCESCPPGKQFKLPFHKTEKNA
NVAPGEIIHSDLCGPMQTPSVSGAKFFVLFKDEATGFRTVYFRRHKNDRYDRLKCFVNLIKNQFGKDMKILRSDNGLEYK
NKRVTEFLESRGIKHQTSALYTPEQNGRAEREMRTIVECARTMLLSRNFPTRLWAEAVNTAVYILNRSLGAQSNDATPFE
LWSKQKPDLSHLRIFGCDAYAHVPNALRKKWDEKSKKLIMVGYDADSANYRLFDPRTGRVTISRNVSFNENLHERKSRNG
EEAYIDFDNEVCETLQNDDRIPRAKPHNENDENRADDAAADEPALGEADVHEQLDDDDPGAANADAIAANDRNPRIAEIA
RPNLRPRDKLLRPQRYRADTVVCESPTTYKDALNRADSDLWKIAIQNELEAHARNRTWDIVELPKGRKAIGYKWTFKIKH
AIDESEQQCKARLCAKGYSQEAGTDYDEFFSPVARFESIRVLLAIAARENLCSMQFDVSTAYLNSELNELIYMRVPDGLN
VSDKNLVLKLNKAIYGLKQSGRCWNEKFDRFMKRIGFKQADADNCVYIGLHENDTVYIALYVDDGLLLAKNQKTLDRLIA
ILQEEFKITSGALKFFVGMEISRTEDGIFIKQTNYIKRILEKFHMEGANPIRTPADQHSKLVSPLEPQTNFPYREVVGSL
LFLAMVSRPDIAYAVSVTSRFLDNHDQTHWRAVKRILRYLKGSENIGLFYPSNSESDTLVGYSDADYAADLDTRRSTTDY
VFKLYDACVSWSSKRQATVSLSTTEAEFIAASEATKEIIWLRKLLSNIEHGCAQPTILHIDNQSAIKLSRNPEFHRRSKH
IDVRYHFICEKVKNNEVNTKYVNTHDQCTDMFTKPLCCEKLNKLLNKINVTNRI
>Copia1_ZM#LTR/Copia 109-4419 109-4419 [Zea mays]
MPCGKAQVRAAMRGARLEGYLTGATKMPDEETVDNKGKKSPNPAFEEWEAKDQQILSYLLSSISREVQIQVTSAKTAAEA
WHSIEAMFASQTRARAVNLRLALSTTKKGSMTVAEYYTKMKGYGDEMAAAGRPLQDEEMVEYILTGLEEEFLPMVSALVT
RVDPISLEDLYSQLLNFETKLDLMRGGGEQHQGSANMAGRGGRGNQRGGSGGRGQRGGRGSSRGGRASWSGGRQSNQGGY
IRRSNNSSDERPVCQVCFKKGHTAARCWHRFEEDFVPDEKLAGAATNSYHVDTNWYTDTGATDHITGELEKLSIREKYAG
GDQIHTASGSGMTISHIGQSTVNTPNRNLHLNDVLYVPQAKKNLVSVHKLTSDNSAFIEFHPNFFVIKDKDTKNILLKGR
CHKGLYPIPATSTIKNALGAVKPSMSRWHNRLGHPSSFIVRQVVSKNKLPCLGPSTDESVCDACQKAKAHQFPYPRSTSV
SSSPLELVFSDVWGPAPESVGRKKYYVSFIDDYSKFTWVYLIKYKSEVFQKFHEFQSLVERLFDRKILAVQTDWGGEYQR
LNTFFNKIGISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKILNLDTPFERLF
HKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENFFPFASLHSNAG
ARLRSEIQLLSPDLLNPATFNSGVDSLIDHAADMSTDPNQISGDNSVQDQAEHTPNMDVLAPSVPNTAPEADAVHIPGSA
SHSGSAPAAPSTAAPSPTCRGDSRVATHPSASHDYVASVDMSRGIAGREESFLTAPTTATSPASSEPSGSLPATAADAQV
PEPILGGVSSMDPASTRPRTRLQQGVRKPKVYTDGTIRYGCFTSSGEPYDLNEALGDVNWKDAMDIEYSALMKNKTWHLV
PPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGYKQQYGIDYDDTFSPVVKHATIRIILSIAVSRGWSLCQLDVQNA
FLHGVLEEEVYMQQPPGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTSLFFYNKGSVTIFVLV
YVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSE
KLSIHEGSPLGEKDITQYRSIVGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDST
LVSAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEYKALANATAELIWVQILLTEISIKSPRAAK
LWCDNLGAKYLSANPIFHARTKHIEVDYHFVRDRVAKKLLDIEYVPTGDQVADGFTKPLSVRLLENFKVNLNLTRL
>Copia-1_AB#LTR/Copia 67-4266 [Agaricus bisporus]
MSSTAVMNDVLPPTVPALDVSGTNWAIFELRFRMVIQGKGLWGHFDGSTPRPTPPRAITPASHPSTPVLATSPSTAAAAV
QVPIPSTPTPTVAEIDAWDRNENIALSLLAQRIPDSTLVVVSAQTTVKLMWDKIVRDYTYKSAFSQANLRQDFMSSCCPS
GGDVRLFLNELRAKKAELLAIGVHISDDEYRSAIIQSLPRWLSTYASNQLSAARLHTSLHNTIDPDMLIVMICDEWDRTR
RFAKKGQKSEGNDALAVEEEGKGKKKGKGKGKAKDGERKKGPCWFCQGEHLKKDCAEWKKKQEEGSSKKDQSKSSANVAE
EDDDESFAVDIDKGGKVSETIARVEVFDSGSSRHISPYRDMFTSLQMIQPCALRTANQQCLNAIGKGEIKLDLPNGDSRS
QLHLKEALYAPEAGYTLISIGRLDTDGFSTTFRDNKCIIRDSNGARVAEIPRNEKGLYKLVKSSCDEVNVAVETLTVDAL
HRRLGHISSVAARKLVTSGLVSGLKLSGDESNSITCDSCSYAKATRLPIAKVCEGERALKVGEEVHTDVWGPSRVATKKG
RRYYVTFTDDYSRWTHIEFLSNKSDVFEAYKQFEAWCETQFNSRIKVLHSDRGGEYTSEEFQKYLKSRGTQTKLTVHDTP
QHNGVAERRNRTIVERVRALLHASCLPKSLWAEAAAHIVWLMNRTSTKAVQGMTPFEALYGRKPRLGNVQEWGDEVWVHQ
AGGDKLGARAKKGKWLGYDTESNGSRILFPDTGTIKIERNFRFIKDQTNLQLEGEYIPTPEVPASSTPAISSPELHESTT
TPVSPSVGSTPTQRESSPAPIQQPDSPDQVPVVRRSQRTRQPSQKAREILEGKGITVVEELDWEEVHVLVTEMEIMEALE
PRTWKEATQRTDWPLWKKAMEEELATLQAAGTWELVDCPLGINIVGSKWVFKAKKDAAGNIVRYKARLVAQGYSQIPGVD
YFDTFAPVARLSSIRTVLAIATARNLEIHQIDVKGAYLNGILNDDETVYMRQPPGFHDTTHPRYVCHLKKTLYGLKQSGR
RWYQRLCEILIDNLGYSRCDVDHGVFFRVIQDDLIIILVHVDDCTLVATKLELIRELKERMNEFVEVTDLGEIHWLLGIE
IRRNREEGKLYMSQRSYIDSCLRRYGFEDAKPVSIPMDPSIHLSTNQSPNSTTEIARMARIPYQEAVGSLMYAAIATRPD
IAFAIQVLSKFSKNPGEKHWEAVKRVFRYLKGTRELWLTFGGQDDTLKGFADADGNMAEDRHATSGFAFIINGGAVSWSA
KRQEIVTLSTTESEYVAATHAAKETLWLRSLISQVFNITLPTTRLFSDNQSAIALTKDHQFHSRTKHIDIRYHFIRWIVE
EGKIRLVYCPTEDMVADTLTKALPSPKIKHFACELGLTTV
>Copia-1_PR#LTR/Copia 28-4293 via tfasty with Copia-6_AG, 60.5% SW:1168, 2 stopcodons. [Phytophthora ramorum]
MSDHHDEHQPTTGTTGVGPDNQGGDNNLQEELQRQQIQALVQQGLLRQRLQAQVQPEQEFTRATGESTTSPQHRTEPRQG
TGASSTSQTEPNFGRVIKTFKIEPFDGSVEQGAIVSGVATWFTRFEALLEMQEDLHQVRLPERMKNALIFQHLSGAASQW
YISNLSDLRLRTFTSLGQELKREFGSKLSKAQIGQLVANEKKENSETYREYSLRLRTMAAATSSDGFETKDSNNLALSSF
IVNAWRKHTDNLRMVMREDSSHPVREFDRAISRLCTIAGHQGVLSFPSRQSAPATKLQPSNTSANAKSNLGKRRVAEGEI
KREGAFKKRDYSKMRCGTCGELGHTTGFHDRYVARQSSGMAYLASDSIDIKSSDRGDVQGDKGGEPSSFDxWSREPSDPK
VHVFDPGISDGAPIIDSGSTYHVTGTRNKLFDLRKCEPHAVEIADGALVCGNQKGRMLINKFTDKECLIYDKPLMRGSVQ
RGVYTLDIPPGMAACALRPNSIEDWHQRLGHLNYRSVAELSKSDAVKGLKIVGSLQPSKPCEVCAQAKISRAPAPHQASR
PLDAQDEVCHGDLAGPFTASYHGNRYYYALKWKGHTTVYFIKTKSEAAVCFQHYMNIVNRRFNRLDGIKVYRSDNGGEFT
AGDFRMVCGGEGIAMEMSEPDVHHQNGVIERTHRTIADAARALMLQAQLPHYLWEYAIRSAVYSRNRVLSRSDPTKTPFE
TFWGRRPDLKLIKTFGQRCVVLIPPEKRSTAYKFRPKGRTGVFIGSDPQRKGYFVYVTGHGNQVIHSRSVIFLEPPKANL
PAEYSDPKDDPLLVVPDNCEIQSEYEDINNVTDEPRSPRRELRVAGNTMRDSVGPGLTPHQVAALNGFEIPTHLRRSERI
ANRSLGLVLSAAHVTLREVIQEPLNLKEAKASTEWHLWEQAIQDEIKALRANDTFDIVEPPVGAHIIGSTIVFRVKVGES
GEVERLKARICAQGFTQEFLKDYFETYTPVAKLNSIRVFLALATQKGMRVRQGDVPTASVKAGLSEVLYVRQPRGFEEVS
RSHVWRLKKALYGLKQAGREWNVELNSCLIEYGLCSTREDPCVYTHPTNELIVLIYVDDILIGYHDEQVLEHLMQALYSK
YQIKDLGDVRWFLGIRINMDTARGITTLDQTQFASEILRRFGMEDCRPRKTPLDQGTILYKRTQHDDEDQENPYxQAVGA
LLYLARVTRPDIAFAVNQVAAHASSPAQSHWIAVKNILRYIEGTKNMGLIYKRNKSTVPARVYTDADWANNEEDRRSISG
VLVQVFGNSVSWQTKRQRLVSKSSTIAEYIAADDEVEEALWTRMLLQRLMKTQALDAIPAMIDNKSTIQRLLNGKNSEAQ
KTVDCSIFSIRDAIQSGHLQLKYCPTAIMLADGLTKALGSTQFSERREAIGIEELTSSAGGE
>Copia-1_MGI#LTR/Copia 876-5312 via tfasty with Copia-3_PSH, 59.7% SW:1243, 3 stopcodons. [Mycosphaerella graminicola]
MSSEKAVTLSVPVLETQKDWEVWSDKIRNQLATHGFSAMIKTKDPVNPEGELHYDPADWTKYVREFRDKQERALGVIKDK
CCYNAKDLIKECTTPLDALEILEKNYSLSGDGEFKTLIEEWNQLTIQSEGVNAYGSEVRRLWNRFTQIHSKVTQDECFAV
MKFITGLSSEFDMWQTTFMQTHNILPKTTGGVTVQVTLADAIADAERFHHIQKASSESHMFAGRRPKAQPHQPREKCKHC
KRPHRGECFSLNPSKAPEWWKERESKKRKVSDDDETTFFSSETKKKTVQHVAISDDSAFNVASRSGETMTFHKGRSLFDT
WIIDSGASSHLIGRRDVFTSFKEIHGHTSRGIGGNSVNPIGIGTIQIPARVDGKLHKLNITNVKYSPNAGVNLLSLDQIW
SQFDQVIPSTTGLSFVKGNKAFRTQFEEGLLILDTMPTPQDDLCMAAYEVEDGWASLWHERLGHLGEQNVRRLKKMVDGM
DAHTLDGQCICEACVMGRFHAKPHRGHIKRGKQKLDLLHMDSKYGPKETRGYDGSRFWLTIVDDSTTNTDCLVYKHVRDV
VDLVRHYLDHHETPVFKCRRIRLDQGSEFITNDFKNLCYDRGIELEFTSTEQSQSNGVAEVVNKIILEKLEPTLYAGKLE
LKWWPAVVEAMAYLRNRCPNSRLDITAHEAWTGERPDISNIRKIGSKAYVLKKEPKDKRPGYVHRADIGKLLGFKGNKQY
LVICPNWKEPRWVYNVIFKEHRKHIREETDSSDSDSEDEPPSKRRNVRLLGPIRRSAKDSRHNASGGELDSEASSSDSDI
EIVSPSRSPTPPPPPRTPTPPPRTPTPPPRTPTPPPRTPTPPPDERPQDETIPDGYREKRQRRPNSLFPETDYALIAKQD
AETESRLASHRDNLFVTLNAQSNPLAKALSEFPEIQAILMFSFIATAAAATEPSEPRTVYQAKADTMWSEWKDAMLEEVK
SLRKNKTWRLKKRAEVLRNGKKVLPGRWVFKLKRGPNGEILKYKARWVVKGYAQEEGSDYTETFASVVKPMSYKALFAIA
AALDLEIEQMDVKTAFLYGLIxETVYVEQPHEFEEGSDNVCLLDRALYGLKQSPRTWYNTLTSYLNKIGFKPLVADISVF
FRGHTFIAVYVDDLLIVGPKKLEIQEIKNQLSERFEMSDLGPCAYYLGMTVRRDRVNRKIFLGxRAYVEKFLQQHGVWEE
KIYTTPMDSASKIELAKEGYIALDELRKKYQSAVGLLMYAMLGTRPDIAFSVSVVSRFCANPTEEHWKLVKRIMCYLRAT
VDFELVFQGDLKDLSGYTDSDWAQDPETRRSTSGWVFSLGSGAISWSSKRQTRVALSTVEAEYMGQTxAAKEAIWLKTLL
DQLLPEGNHGPQATIIHCDNQGAMALAKNPTFHSRSKHFSVDTHFIRERVQEGDIELHWVETEKMIADGLTKPLANKQFH
AFRRALGLALPSHVETPRWLQSMTDQKKNRTKEPNNEGE
>Copia-1_SCH#LTR/Copia 5-4639 61.3% sim to Copia-1_CPu, SW:1798, [Schizophyllum commune]
MSPDFPAMSAQTFKIETPLKCKDDGTNWPRYKEVTLQKIKKTAGLARHLRGSPRPPHPVYNRVTKAWYKSSDLGDPDSDD
SDDEDEDEEEEEEEDENAPATATATSTSVPTPLTDEEREALEDKLDEWEQREAAMRDIIYTTVSPSTMTEIKGGKTAKDV
WDALVSKFENVDNVAIRTQLYRQLGNMKCVEGENLRVHLAQMDDLFDRLEQLGMEMDHTQRVEHIKESIPDSYQVIVTQM
QQTVFAMNLTRKKKKIVLSSKDVIAQLQARFDADEQQKKSNESVAMAASRMSKGKGSASKDDKCSNCGKAGHWKRDCWSK
GGGKEGQGPKKKKNGGKGKGKGQSQANTAAKSSGVDDSGDETALITISCPNDDDNVALAITSDFRDDAQLLALPAEQRSK
ITIPDTGATGDFSGDRSRFITFHDIPPEPIKAADGRALYATGKGDMLVPFPMGENEPPTPVRIKNAYYAPDMAFTLLSVS
KLDRAGCRIKIEGGIFTIAVQRPEMKVIGRIPLVRGLYRIDKAPAARATQQVAAATTPKISITELHNRMGHKHHDALKRM
VVEGRVTGINLDMDSKPEFCVGCLEGKAKKKPFPQVGTYEDVKAYGDKVVCDLQGPYPTTSLGGKKYAQVYRDVFTREPR
PYYLAKKSEAFGKHLEYDAFVKLHRGVQHIRVLGTDRGGEFISGEFERYLAREGTIHHKTVHDSPQSNGIAERGNGYLTD
MARAMIKTSNLPDYLWAEAHRHACWIDARTPTKGLPSGKTPLEEATGKKPNLAQVRVWGCKVWVRKEKLKKLDSRVEEGR
FVGIDEESKGFRVYWPSKRKISIERNVYFDDKTARAGAKANGPEGETLIVDSEALDVPAKAPTTSTPPPPPPKVQEPTTE
PSPKAASPSPSAPPSPPPTQPEPEPEPVPAPHEVVSEARRSSRNAGKPAPNYQEEDLRRRPQHVAQVADAKEVVIEDDFV
DEVERLACAAAMPIREEVEDEVDIGGSELDSLWSKLVEKLGLSADVQELEVEPRTVEEALGRADAEKWEAAIREELTQIN
KLKTFDVVEVPKGKNVVKVRFVFKLKRNELGNVVRYRARLVARGFTMVHGVDFHDTYAPVIRQPTLRIVLTVAAKRKAAI
HQGDIRNAYLNTEIDEDVYIELPDMWEKFFPIPKDLKGKRICGKLRKGLYGTRQAGRGWYKKMRGTMLTLGFKVSSADEA
LFYAFNGAEYVVVAVATDDFTVVADCDDRADEFKRRVGQHYEFVDLGKINWLLGMHITRDYEARTILLGQQAYIDQLVDR
FGLRDARPVVIPFEPGTDLSYEAPGVSSELLSKEEKGTYRELVGGLIWVSTCTRPDIQFYVSTLAQYFEEPRTTHLKYAM
RVLRYLKGTRDLKLILGGDHLNPVAYADSDWASTHAHRKSISGFVFFIGRGPVIWRSKKQPIVTLSSGEAEYVSLSTAGK
DVIWVHKLMVELAPFFDEPRRLYPARPTQVYTDSQNSIALTKDSVHHERTKHIDVRYHWIRQTVEQGHFKISYCDTNNNV
ADLFTKALGTVKFVHFRDVLGLGDA
>Copia-2_ADe#LTR/Copia 36-4838 65.8% sim to Copia-1_AB, SW:3211, [Auricularia delicata]
MSSTSLTTDTLGSDVKKLETNGSNWAIFLIRFSEVVEAKGKWGHFDGTVTRPQYTAPTTQAEAEEIAKWDRDEAIARTML
TSRIPDSTAVKIQKYGTVAARWTAVSAEYSQKGLYAQTNLRKVFMEMKCERDENVRDFMGGLAVKREELAMQGVNITDDD
YRSTIISSLPPQLSNIASSLLASRRLLGIQHIPVEPDNLIQVICEEYDRQLIQRGKRSGGGAGSTKSGKAENEALSAVSS
SKGSKKQGNGKKETRKCWKCQKEGHLKSQCPDKSSSGSKDSGAANAAVSSDSDSEIGGAYALDGASCDGADQADGQSAAS
TDMPTLLPVSSTMPSEAGETSDEEVCEEDWFSEVGDDADCACDLGDWPNASWDQMRTGSGAEDSCGAHAAEVEHEKPADA
LEIAAAAARVARQDCDETWSVRTELFDSGTTSHISPYRDDFINLTSIPPRHFRAANKDTFAATGKGEMIIDVPTGGTSSS
LRLTEVLYAPEVGYTLVAIGKLDEHGFRVEFGGGKCKITAPDGNTVGEVLRNSRGLYRVDREAESANVATQTVTAQEMHR
LLGHCSPDVARRMLEKGMATGLRLEYRDGKPFFCDACTFAKATKKPISRVRQSERASEFAGEVHTDVWGPAPVESIGWRR
YFVTFTDDKTRYLKLYVLAAKSDTFEAYKTFEAWCKTQHKAPVKCLRSDRGEFTSNEFSAHLKAAGTERKLTVHDTPQHN
GLAERRNRQLLEKVRAMRYDSKLPRNLWAEAVHHAAYLINITPTRALGGVSPHQALYGSPPDVSKLLPFGENVWVVTQKG
SKLGDGRVVKGQFVGISEDTLDGMRIYWTERKSVTSERNVYRREEDAQEAARQLEGEQEPGWDVAELPATSAPQNATTAG
GAPGTPSAASAPVSAIKIESDTGAQSTGTKEDAVEELGKPSAPAAGKSEHHDGYAPRDPSARGEWHSVPDGEPKTRAQPA
QKQNKPANELESRSATTGQTALPETAQRRQVDVPESDADSERPRRERKPSCRVQELLSGVGRTSARPSDPVVTKGITVPP
KTAKPSEPKILEADGESDWMMAAEDEEFALAAEMSDADAMEPRSLAEAMKRPDWPLWEQAIREELAQLRDMSTWELVDAP
PGANIVGSKWVFRAKDADGNIVRYKARLVAQGFSQVPGVDYFDTFAPVAKLASIRVVLALSARMDLELHQIDIKAAYLNG
RLTDAEVIYMRQPPGFTTPGAAGKVCKLLKTLYGLKQSGRRWYQRLVEILCQKMGFTRSEVDQAVFFRHGGKGRVVIVVV
HVDDCTIAASSKELIAGFKRRIRTYVEITDLGELSWLLGIQIRRDRETKTIGLSQKSYMDSILRRYNLEEVKPLSIPMDP
NAHLSSAQEPKTTAEYAAMRDKPYSEAVGSLMYAMLGTRLDISFAVTTLARFSKNPGLPHWEAVLRVFKYLKGTKDLWLT
YGGVEGELHGFADADGSMAEDRRAVSGYAYIIDGGAVSWSTKRQEIISLSTTESEYVAATHGVKEGLWIRSLISQIFEPI
AGPTTLFGDNQSAIALTQDHQYHARTKHIDIRYHFIRWVIEEGKIRLVYCPSAEMVADVLTKALPSAKVKHFATAHGLRM
A
>Copia-1_SI#LTR/Copia 252-4243 via tfasty with Copia11-NVi, 76.9% SW:3055, 1 frameshift and 2 stopcodons. [Solenopsis invicta]
VKNITKFDGTDYQSWKFEMRTLFMAHRLWDIVNGSTPMPEAGAARETWSVQNANAMYLLSSTLEPEQKRPMLTCENACEM
WKKLARIHEQKSASNKLLLSTRLYEYRMSASDSITQHITKVQNMAAQLLDVGETVTDTVIMAKILGSLTPKFAKFQTAWD
NMPPDMQTLQNLEERLLREEARMTENDESESAFVVSKKSKEKSKSRVSSREAKNKKDGKDIRDRKDKKKVRCFRCQGLGH
FARECKKDKKEGNRGTSESSDCAFVVESGKSGAGKSGFGEIPTDLAREILKADKKDCWISDSGASQHMTFRREWLRDFRE
LPMGEHEVALGDDKVCYALGVGTVDIEKFVNGKWIASYIKTVFYVPELKKNLFSVGACARKKIGVYFFDEYVKFDNRGFT
AGYGVIQTNNLYRMLFKTKCAEDENEASVAKTSFLAWHERLGHVNVRAMRKLVSEKLIDGIEITDGAEDFCGACQEGKSQ
RKAFKKTRVRAGTEPGEVIHSDVCGPMSVESIGGSRFMVVFKDDATNFRYVYFLKHKNEVLEKFKELDRLIKNRFGRNIR
VLRSDNGLEYKNRAFDEYTDKRGIEREYTAPYTPEQNGKAERDNRTLVESARTMLLAKGLPKNLWAEACNTAVYLANRAG
ASSMRVGATPYELWMGVKPNLHHLKIFGSEAYVNVPQIKRTKLDARAKKMIFVGYDSTSSNYRIFDPVSKRVSVSRDVTF
RETTGSVKLSKPKDAREVILPKVEREALVPAEGDSFDEEEEDDKVFENAVDDEQRDEGRQQVNEPVRKLRDRSLIKKPSR
YDAEAAECDIPITYREAVESKDAGKWREAIDSELESHEKNGTWHLVKRDPKMKPIDSKWVFKKLKNEKGEIRRFKARLCA
RGFMQEKNIDYTETFSPVVRYDSLRVLLVASKNLEIAQFDVQTAFLYGTLDEEIYMETPEGLNMDEETREEQVCRLVKSL
YLKQSPRCWNQKFSSFLREFRFQETSADKCIFVGEVNGETVYLALFVDDGLVIGRTKGVIEVVFRYLKRAFKIMVGDGSL
FVGTKIERDRNKRSIFVHQTLYAKKIFERFGMSEAKSVSVPSDPNTTLLSVSENDEGIEKVPYxEAVGSLMFLSIVSRPD
LAFAVNSVSKFLNKHNREHxQAVKRILSYVAGTMDYGIEYRGSENDEITLEGYSDSDYARNVETRRSTTGYVFQVAGGPV
TWASQRQKLVTLSTTEAEYVAASITAREAVWLRKLLEEVNCLSQGATTVYVDNQSSIRLVRNPEFHKRTKHIDVRYHFVR
ERVQKKELEVNYIESAKQKADIFTKAFPKNRFCELREEIGVRERPRTNGGS
>Copia-1_HM#LTR/Copia 91-3920 via tfasty with Copia1_DR, 1 frameshift.   [Hydra magnipapillata]
MKLKNLKDTLIGNGEIDEDENEIAFAELIQFLDERSIALIIRDAKDKGREAFKILKDHYASTSKPRIITLYNQLTSLKKF
TNESITDYVIRAEKSATSLNTAGESISDSLLIAMVLKGLPDDYRAFVAIITQSETSNNFQKFKQALRSFEETEYTRTTHI
EHSDTKIMKFKTSGGNIKKVLTCYTCGTIGHKSSECQAKTKPKIWCNYCRSNTHKDSSCRKQIKDKAKAVNNIQKHTYAF
KINEEQYRETQNKTFLVDCGATTHIVNTDEYFTYIDEYFKPEEHFIELADGTRTNNIAKKRGTVKTLLRTKNDELVTVTL
ENTLYIPTYPQCIFSVQAATAKGARINFHKYSAELISKEGTVFPIRQYGRLYYFYKNSINETRTESLEMWHKIMGHCNTN
DIIKLEDVAQGMKINNIAKFDCETCILSKNVNTCNQQPDTRATYPFQLVHTDLAGPIEPVAIGGFKYVINFVDDYSSCLF
TYFLQQKSDAAKAAEKFLADIAPYGKVKTFSFYNDISPSGNVKCIRSDNGGEYLSKEFNELLLKHTIKHEFTSPYSPHQN
GTAERNWRSLFDMARAMIIESKLPKHLWTYAISTATYIRNRCYVQRIKSTPYGLVTGLKPNISRLHLFGSVCYPYVHNTK
KLQPRSIKGYFVGYDKDSPSYLVYYPESNSVLKHRLVKFTEKYESVSQIDTYNTDDFINVEPKTTESTTKPSTPDNKQNI
PQEISSSRYPQRQRQPPKYLEDYIVDNDNDDEINYIDYCYLMNIPTSYNNAINTNESDKWKNAMDEEIQSLTNNDTFIIT
ELPANKKVVGGRWIYTIKGNNNKIIYKARYVAKGYNQIQGIDYLETFSPTARMESVRILMQISVQYNLILHQMDVKSAYL
HAPIEREIYVNQPPGYEKTHNNKQLVWKLNKSLYGLKQSGRNWQNVLSDFLEEIQFIQSNADPCVFVTRSNTEISMILVW
VDDIIIAANSNELLIKIKKKLSKRFKMKDLGPLTYFLGIQFKSTSNYITMNQSDYLQNVLQKFGFDNCKPRSTPCEQVPN
SYHNQESIKSNDSEIKLYRQMVGSLLYAMTCTRPDLSYVVTKLSQHLSKPNSGDWIMIKHVFRYIKHTLNYCLTFRKTDE
LKLYAFCDADWASSLEDRHSISGYCFSLCKDGPVISWKSKKQSSVALSTCEAEYMSISAACQEISYLAKLLRELLEVKIE
PVTLRNDNQGAIALAKNPIKHTKSKHIDIRYHFIREFHQQGRILLEYIQSNENYADIFTKPAKKDSLRKFKDFLFGL
>Copia-1_AT#LTR/Copia 72-4501 via tfasty with ATCopia72, 1 frameshift and 3 stopcodons. [Arabidopsis thaliana]
MVKAVVHRSTRRPASSSRAGSTSRAGSLPPIPEALFAPFGSSVVMNPDSIHSPLFLHNADHPGISIVSEQLDGSNYNQWS
SAMKIALDAKNKIAFVDGSCPRPEEGNHLSRIWSRCNSMVKSWILNSVNREIYGSILSFDDAAQVWNDLHNRFHMTNLPR
TFQLVQQIQDLRQGSMNLSTYYTTLKTLWDNLDGAEASEPCQCCKKSNCDGQLAAKSKVNRGRIIKFLAGLNEKYSIIWG
QIIMKKPLPDLAEVYNILDQDDSQRQFSHNVPSAVFQVSQEVVQPGVLPSSSTMNQLGTLNAVQKKDSKPICSHCGYTGH
TSERCYKLHGYPVGWKKGKSFYEKSQHSSQSSQPPKPNSGVTAQVTGNSQSTPAGLESLIGNLSKDQIQNFIALFSSQLQ
PATPVQQPASMPSSHSNDPSGITFSSSTFSFIGILTVSETEMTQSTWIVDSGGTHHVCHVKDMFINLDTSVQHHVNLPTG
NTIRVGGVGNIAVNDDLILKNVLxIPEFRLNLLSVSALTIDIGARVVFDSNCCVVQDLTKGSTIGRGRRVGNLYLLDVED
SVSEDTVSTSFVANSVVDASVWHQRLGHTSFDCIDLLTDVLGISKTKNKxLLHCDIYQRAKQKKLTYLSRHNICLAPFDL
LHIDVWGPFSEPTQEGYHYFLTIVDDYTRVTWVYLMKFKSDVLTIFLCFITMVETQYQTKVKDVRSDNAPELKFEELYRR
KGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSQIPLSYWGDCILTAVFIINRTPSPVISNKTPFEMLTKKVPDYA
HLKSFGCLCYASTSPKQRHKFEDRARACAFLGYPSEYKGYKLLDIESHTIFISRNVVFYEDLFPFKNKTAETEDSSVFFP
HIYVDRNNSPPAQALPIQETPPLDVPATKxNSRVSRPPAYLKDYHCNAVTSSTDHPISEVLSYSSLSDPYMIFINAVNKI
PEPHTYAQAQQIKEWCDAMGMEITALEDNGTWVVCSLPVGKEAVGCKWVYKMKLNADGSLERYKARLVAKGYTQTEGLDY
VDTFSPVAKLTTVKLLIAVAAAKGWSLSQLDISNAFLNGDLDEEIYMTLPPGYSSRQGDSFPPNAVCLLKKSLYGLKQAS
RQWYLKFSESLKALGFTQSSCDHTLFTRNSKNSYMAVLVYVDDIIVASSCDRETELLRNALKRSFKLRDLGTLKYFLGLE
IARNADGISICQRKYTLELLAETGLLGCKPSFVPMEPNQKFSQEDGELIDDAEHYRKLVGKLMYLTFTRPDITYAVHKLC
QFTSAPRAPHLQAVYKIIYYLKGTVGQGLFYSANVDLKLSAFAYSDFSSCLDSRKSTTGYCMFLGTSLVSWKSKKQEVVS
MSSAEAEYRAMSMATREIMWLRYLLEDLWIDVSEASVLYCDNTAALHIAKNLVFHERTKHIERDCHHIREKIILGLIRTL
HVRTENQLAVILTKALFPGQFKRLLSKMDIINIYAPS
>Copia-1_ADe#LTR/Copia 22-4395  [Auricularia delicata]
MFGTTLTSTGMKIGTLPKLLAGGTNWVSYRDQMEQFLLGQPGARKHLTGRATAPVPPTKPKVADPAKPTDAEAKALASYE
TALSVHEDTMDVYLQKEAWLITAITQSIPADLHQRLIGVRPAHTLWTQLTAMFVNQSILMRTEILIQLFEIRSTNEDGKD
VLKIIQALIEKRNEYVEAGGTLDDEIYAALLIKSMPKRYRSVIHTAITASQGKLEFDAIYAALREAIRLNQADERREREE
ARAMAARFAKKQPQQSGSTTTASSKPKCANCGRKGHGKDNCWAKGGGAEGQGPPGREHGYANGDDGKAKSKPGGSAGKGK
AKAAESATDANTGKEKEEGFCFLAAGVAHAHPASQPTLETRLLDTGASRHFDGNLDNFVEITDCKPYSIQTASGLETATQ
RGTIRFACHQDGGVRTFMLKNVYYLPSCKTPLVSIGCLRKKGLVFTNDEDGYGVLYDSKDSARRPILRTAEVDCVYPLTT
WNPTRGSAAGVTGMARKPLTRMEAHARLGHLSHSTVEAIVKNGSAINFEVDLSTPIQDCESCIRAKMKATRIAKHRLEPL
GKELGDHISADLWGPARTEARGGYRYYGTFLDGATDVAYIGLQRSKDSGETLDNYKAVEVGLKTQHGVDVKTFHSDRGSE
FTSAKFDAHLREQGTKRSLTTHDTPQHNGAVERLNGTIISLVRAMLYDSGLPESFWGYAALYVVWLRNRTPTKRTAPLSP
LEKATGEKPDLTRARQFGCDVWVAVKDGSKLEPRADAAIWIGPSAETADGHTVYWKSMRTVTVERNVRFADGTQFPTTQD
EQGEPHGDGAVQAEPTSSTNKPAAPHAAGQPEPLVGTDRTAHGRVSDTRSAEGESEAPAAQDARKRDFTAADIGTDDPDA
QQGRPKRHRKPSAYVQAIQSGDGVASHYRNRDPKFPPGLQAPAHAGFAAVALPPSFIPKNYQQAQRSAIWPEWKPAMDAE
MASLQSHGTYTVVPREEAGNAPILPLKWVYDNKTDSSGNITQRKARIVARGDLQEQFGGYGETYAPVLRTTSRNMLLAIA
AHFDWEVRQADFRSAYLNGVLPQPVFVEQPDGFELEGKPRTTHIFCLNKALYGLKDASRIWFDTVSSYLNSIGFASSVAD
PAVFYRVTDTERTYLGLHVDDPIYTGNDVGLLLQLEQVLNEAFPMKILGDASFYLGTAISRDRIAGTISLTQPSYIEDLI
QLCRLADAKPTPAPMNPGIRLGRHQCPSTDDEKREMEQVPFREALGLLLWIANGTRGDLLFLATLLSQFGNNPGRTHWEA
LKYGVRYLAGTRNRALVFGQSDDGLRGYTDASFGTEALDWRSMSGYAFTLFGGAISCRAKRQSVVALSTAEAEYIALSQA
AREVIWIRSLISELFGPLSSPTPVHVDNKSAIDLAKTNKFHDRTKHIALPYHHVRSAVADCTISVLWIDTHSNIADIFTK
ALDKVKVARFSSQLGLSP
>Copia-1_BM#LTR/Copia 159-4034 [Bombyx mori]
MGPNMFNLEKLVGRENFATWKFSMKAYLEHEDLWCCVECHDGKPVDAVKDIKAKSKLILLLDPQNYVHVQDCKTVKQVWE
NLQKAFDDNGLTRRVGLLKDLINTTLDSSNRVEDYVSKIMNTAHKLRNISFDVNDEWLGTLMLAGLPEEYKPMIMGLESS
GIKISADSVKSKLIQEVNTSKSAAFYTNSRKPRNNTSSIKTKGPRCFNCNRNGHFAKYCKLPKKQTPNKGESPSFVAAFS
ATVSKNVSNEWYIDSGASMHMTSRIDWMYNVTESSVKNITVANREPLAVNGVGCVNIQLSQENKIQVKNVLFVPGLATNL
LSVGAIVKNGYKVTFNDKGCEVGNSKGEVICSAKLKNSLYVLETCKEVAHLVSRNKNSNNTYLWHLRMGHLNMSDVKKLP
TCSEGVTLIPDVNDVTCTHCMEGKQARLPFKNTGTRATRPLELIHSDLCGPMENISFGGMKYFITFTDDFTRMVHVYFLK
DKLKILEIFKDFKLKVENELNYKIKRLRTDNGKEYCNYNFEKYLSNHGIIHQTSTPYTPQQNGLAERMNRTLVERARCML
FYANLEKKFWTEAVATAAYVVNRSPTKSLEGKTPYELWKGKKPNLSHLKIFGSEAMVHVPKEKRHKWDKKSVKMIFMGYC
DSSKGYRLMDPKTLKIIKSRDVIFIENVETSIPIEDNRTVTVSSVPSETEDSENSSVSREQEIHTQESSATAPLMSSKDS
NIRKGDSEDSSEYDTDTGELDATYHPPYPIRQDYSSSITLRQRNKQCDTQDGKTSLLCLYSDLTDPQTVEEVLTSSQAAE
WKRAMDEEYSSLMKNKTWSLTELPPGKKALPCKWVFKIKTDQNGNVTRYKARLVIKGYAQRKGTDYEETYSPVVRYTTIR
YLFALTAKYGLDIDQMDAVSAFLQGEIDTEIYMVQPEQYKQGSKVCKLHKSIYGLKQASRLWNLKLNCVLHELGMQQSRT
DPCIYYNVEKNTFIAIWVDDLILLTSQKKTKNLLKEKLKEHFEMKDIGSTSYCLGLQITRDGGKVMIDQEKYIKEMLARF
KMSDCKPVRSPFEVGMKFNEKKEEDELIDCPYQQAIGSLLYLAQGTRPDISFAVNTMSRFNKDYTAAHWTAVKRIFRYLQ
GTKDFKLVYTKDGNENITGYCDADWASDVRDRKSSTGYVFMLQDGAISWRSQKQQTVALSTAEAEYMSMSSAAQEALWLQ
QLHTELGQQKNNPLIIFCDNQSAIKLSNNYCYLPRSKHIDIRYHFLKDHVSNLDIKYCYIKGEEMVADNLTKGTSVDKHL
YCLTKMGLHSKG
>Copia-1_DAn#LTR/Copia 453-3635 64.3% sim to Copia12-NVi, SW:2434, [Drosophila ananassae]
MQGVAIKIEKDIDEKNTEIKKAITMAAQARIEDTLIPVFDGTNFTSWKLRLMVLLEYKECKQQATCIKTDKEAEADWTKR
DLKARMMIMSTVTDRQLEYIGECKSAYEMMKKFDSIYTTKSTALQIIQRGKIEEIKLSNYTEVDDFFVDFEKSINDFKAA
GGVLEEAEKMRYLIKSLPPNYSYIGDFIDIVPEQQRTVEYVKSKIKEKNFNKSETSKRSSVSTFNANAKGVCFSCGKYGH
QKKNCYLNQGNQASQIAIQTGQNRGFSHNLGRGKRGNFHGRSRGSYSRGRGSHRGYVNETSGNESSAAWSVELQHPAANG
PSGCDFKDPSENAYQLKWILDSGCTDHIIKSDKYFVSYQDLKIAVDVKLPDGKTLKATKIGNIKLTFKTYYKNKTVELKN
VYYVNGIQENLLSVSRITKNNIIVAKNSNAKIYDQHNELVVVANKVNNLYVIKGIAKETGSIKEVYTNVLKLTNKEKWHR
ALGHINFKYLDKLVSEKLLEGLPDKLEKTEMKCANCLQSKMSNKPFENNRIKSKEILETIHTDLNGPHTTGYGGEKYFLT
FVDDYSKCTRLYCIKNKSDTVNCFKDYINFVENKFNKCVKKLQCDNGKEYLNKDIYTFKARLVVRGFQQKEDIDNVYSPV
GKMQTLKTLLSYSCVNNLYIEQMDVETAFLNGKVKTEVYINMPLGYEMSEDKVYKLQKALYGLRESPRAWYDTINEFLTG
LGFIRSKYDYCLYVDIAKKDPIHLLVFVDDLLICCKNFSKIEEVKASLKKRFSMKDLGKISSYIGIDVDYNNDRTKMTLC
QTKYIESLAEKYMLENSRLYDTPMETNLKLEQASVSTEHIKYRNLIGELLYISTGTRPDITYSVNYLSRFQNCYNETHFK
YALRVLKYLYRTKDLKLTYCDNLNNDILDCMVDSDFAGDCIDRKSTTGFVIRFQGNPIFWKTRKQNSIVKCSTFAEYTAM
SEAVTEILFTRNLLMDSFKEKFSQPIKIYEQIIGAIAIAKFGNFTKNSKHIEVQYHYINESYNKGLIDIVKVDSDKNLAD
ILTKSLCKTKFFNNRQSLKLL
>Copia-1_Cfl#LTR/Copia 82-4176 via tfasty with Copia-22_NVi, 82.1% SW:3708, 3 frameshifts and 3 stopcodons. [Camponotus floridanus]
MAENHGIPVFDGEDYGSWKKRITMYLKMKKCDVVITRERIGTDNTEDWEQNNLKAINYIYSAITNKQLEFVSDKESAYEI
IKKFDEMYLKESTALQIVLRNKLEKLKLKDYSDSATFFSDFEKSINELKAAGAKVEEKEKLNYMLRTLPESYSYVGDLID
TLKTEDQTVEYVKSKIKMLELKNRESESADSKSNAFVTESKQNREWRNPADQGCFNCGKFGHYKKDCTESGKGSWREPHR
GSTRGRGQQRGTWRGGGYNKRGSGSTNGRGGHYNSRGRGHHWRREQNGQEAASGGGVFHTVVEVNSLNREVKENNQIHWL
LDSGCTDHIINNEKYFSECTTLNEPINVKVGDGRILKATKVGKVNILFPIYNRKRKVTLFNVFYVKEMKQNLISYSQVTE
RNKIVSTGNKSKIYDKFNRLLAIAWKEGRLYKMTSFPCDESEVNVTSSYNKAGNISLKEKWHRILGHVNFNYLTTLCKNQ
LLDGIPNEIDTEYIKCRICENKMHNLPFENNRTRAKEILEIVHTDVNGPHKNLGMNGEKYFVTFIDDYSKAAKVFVIKSK
DEVYKCLLEYINEVENKTGKTIKKLRCDNGKEYLNRNIYKLAKEKGIFIDTCPPYVHELNGTAERYNRSIMDIARCLLAE
AKVNVKFWPEAILAAAYLKNRTLANTIEKKTPYEILFGKKPSAKYLRMYGSRVFVRVPEQNRTSKWDRKADLGILLGYNE
VGYRVLINNRIVIARHVDIVENDIRCIGLDEYENSSDSETGDENLDDCLENFEDCQEINEQELRGKENETESNAGQKQKN
NQVQEIRKSSRVKKKPVRYDENYVYNNCIYINYCSADSPNNFEEAINCDESECWKQAMNKEFNCLSKNKTWKLVDQPKNK
KVLDVKWVYTKKSENKFKARLVVRGFQQKEVVDDIYSPVAKMQTLKILLSYCCQKGLIIEQMDVETAFLNGKVLxRQHFx
MVKFGKVSEIYVKQPRGYEDGSNKVCKLEKALYGLRESPRAWYECLDEFLKKLGFKRSKYDYCLYVLANDDNIIYLIIFV
DDLLICCKNKKKIIEIKRSLSNRFRMKDMGEVKHYLGIDIEYNYERNVMALNQKSYIESLATKYYIKSTFxKLIKCFLLT
GTPMETNLKLEQASVVSNDIQFRNIIGALLYISSGTRPDISFSVNYLSRFQNCYNATHYKYALRMLKYLYLTKDLKLIYK
RNENVEIIDCYVDADWAGDCEDRKSTTGYIVRFFGNVVYWKSRKQGSVTKSSTSAEYVALSEAVSEIQFVKDILEDFDIY
IKKPIKIFEDNSGALSIAKYGNFTKNSKFIEVHYHFVNEKYMKGIIDIVKVETEYNTADLLTKPLSKEKFEKFRNMLNIK
EFII
>Copia-23_NVi#LTR/Copia 1421-6796  [Nasonia vitripennis]
MFLDNSLIEERLLESVKKEIKRIRAEEVAPAEKVDPSQRGNTLSPKLDVNTVTADGGPAYKFDEGKEQKSDFVDNDSWKN
KFEANMLGKSTPVIKSNQLIQLGLGLNNFRHDXRTSKLGQFSLNNTDKNLEISEITAKLDKLEKENTDLKKTIETECNRV
HDDVVTELLRHKWAIKENYSWIEEKVQFWAEQDRLCDEAQDESAGLSADAENAQNNNQPSNQNISNKVTSNAHVSRDYIA
KLVQDEVNKIDSNKSIGNIQDKIQIEVTNRDSTFRREYKLTQNLNVNTFLDFLNSELTLADLLYVIDSTVKPTRVLDETK
LEKDKVRVRDIIINRIDISYYEKVSDIRDPIKLLDEIKRIKENELNVTTRSVRKELHSIIYNPHKERASAFWDRFDRIVR
LYNKLPDTPPLSEVEINDAFYEAIVVHLPQVKETEFLNKNTTGKVLNLKQLKDYIVQQESARIGSNGSAGQKAEAGAKAY
LVTNPGVLCYNCGNKGHYKDECTRKGKMCFRCKRYEGHVRANCPYTENQLEKVLKENESQRRYESSNSNRGGRRGGFSRG
GKRRNSESQKGSNPKKIKSDRGHARGRSRGKGRQNKQNNNNSTKTSESGECTGLYVDSKFLNAVESDKNRLIRFLADSGA
TEHMTNSKLIFKTFDNTKRLDIKCANDNDSAIIKSEGVGNISGYTKNDDFLSLKNVIYAKSLSENLLSLRKFVDKGLGIY
LDNKXIDIFDPXSKTIFVSGIYEQPYWVIELETNNSDXNENNNVNKVVAYITTRRREYPTVSVAPNKKSESXIKETTREQ
DKLESTEISKDSKLDEPMQIDNELNVEVNSDNNKLCSSYSNFENTLNDRKICNLBESIDLEKLDCESNISKINNLFYTNK
AMLWHVRLGHASLKKLKEFQKKFPNLKNLKEIKFDDSVMDCEVCIVSKFNKLPFSSTRQRATKPLQIVHADTMGPISPAT
HPKKYRFISVFIDDYSRLAIAYPMKHKSETGHCLESFIKSSRNLLGYDAKFCYLRCDQGTEFTGGYTQEVLDKFEAELKL
ASPDTPEHNGVAERFNQTIQKLTRALMYDTRLPENMWDLALNAAVYYYNRTPHSSNEMIPPLQMFKPDFKLNLEQLKRFG
CIAYIKVQRKTGPKFDQLGKRVVLIGYKPTGYLFLKPEEGKYYESRDVRFNEKLVFGDKYNKQSIKDWSNPMEDINKETW
LVKFDEEDEILISETEGERRRRGRPRKEKGVELPSESHTLESDLNLLESDELNAFIATVENDPNSYREAMSTKNKLDWQG
AIKSELDSMEKNKVWTLVDRPVIQGGKRPNIIDSRWVLKTKVGLNNDNKYKARLVIRGFKDQNHYKLMETYAPVSRLPLI
RSVLAIINKFDLEVRQLDVKTAFLNGTIDNEIYMEIPEGIDCSPVTRRDKVCKIQRALYGLKISPKKWYEKFTEVVIKLG
LESHDSEPCLFTWRNNEKYLIMLLYVDDILITSNDTHKLDEITSKLKLEFEMSDMGEPKSFLGIEINRDRQNRTMTLTLE
NYIDKMLKRFGYSEMHPQRTPMVTNQVANRERREREESENQLENTLNKTNGPYREIVGSLLYLANTVRPDITYAVNVLSR
HQINPTDEEWKMVKRVCRYLKHTRSLGLKFEGKLDNLQGFSDASFADCKGSITTSGFVIKLYGDTVAWKTHKQTFVALST
CQAEYVAMSEASQEMVSLQNSLSLILRNSFLPMTLWCDNKAAEASTQVSSTSKLRHMTVVREHYVRECVARNLIKISWIA
SKDQIADIFTKALPFELHAKLTKLLLNYYLKY
>Copia-23_Mad#LTR/Copia 778-4949 via tfasty with Copia-41_Mad, 1 frameshift and 3 stopcodons. [Malus x domestica]
MTSLNFSNIETLIGSNFKKWKEDVEIVLGLMDLDLALREDKPATLTDKSTTEEKLNFDKWERPNRMSLMIMKKTMTQPVK
xGIPKLDNAKAFLATVGEKFMESEKAETGTLLTQLTSMKFDGTGSVREHILRMVDLSLKLKDLEVPVTDQFLVHMALNSL
PAKYGQLKVSYNTQKDKWGINELISMCVQEEDRLKTDKTGEVNLVQMEKGSKLLSAGSSFSVGKKKKNIISYSFKNANTS
KGSFKFKPMNTEIEKTNECYFCKESGYLRKNCIGFKNWLTKKGKITNVFVCVKSNLIYIPPKSWWFDTGCSIDITNSLEG
FSKTKEVNNEVYNVYVGNGSKVVVEPIGSVKLVMSSGFILELNLVLYVPSMRRSLISASKLVQLGISFVGDDERFFESNN
MNSLLGIAYLQTDMWQMECSYVHECFHVQGIGSKRLLTLEKSSMLWHKRLGHISKERIITLCKQNLLPQLDFNDFQTCTD
CFKGKLTNTRKLGSTCSQHLLEIIHTDICGPFPNKTICGKSYFITFIDDFSHFAFVYLISEKSEALDCFKIFRLEVEKQL
EKHIKIVRSNRGGEYFGRYTEAGQHKGHFATYLQDNGIVAQYTTPGTPQQNGVAERRNRTSKDMIRSMFAQAKLPIFLWG
KALKTANYIINIIPSKSVTVVPFEAWTGRRPSFNHFHSSAFxSLDWKKLDPRTMSCRFIGYSEKSKGFKFYCHHGPSRIM
ETHNAKFVEEPEELSALAITSQLVEFKELRNDDTILLDQQEITLGFRISPPQMLSTPPETQNEAPISFTEEGTSNNAAET
NDTNEEIYEQPMNITTAGNKSPLEVPAAENVRRSQRARKTVMLPDFVYLNEAEYSLGDEDNPATYHQAITSIRAPLWHQA
MTEKIDSMNTNQVWSLVPKPAGLTKTVGCKWVFKTKRDSQGNVEKHKARLVAKGFTQREGINYNETFSLVSTKDSMRVIL
TLTAHFDLELHQMDVKTAFLNRDLEEDICMHQPPGFVERGKESMIYKLNKSIYGLKQAFRQWNKKFDQVMAAFGFHENKM
DECVYLKIIGSKVVFLVLYVDDILIASSDITLLQSTKQMLSNSFDMKDLGEAKFVLGIEIVRDRSKKALGLSQRLYIDRI
TKRFNMENCSSGELSIGKGNKFSNDQSPKNDLEKDSMKAKPYASLMGSLMYAQLCTRLDLAFTVSVLGRFQSNLGAAYWT
AAKKVLRYLKKTRDYMLVYSxVDELELVAYTYSNFAGCVDDRRSTNGYLFLLAGGAILWKSAKQKSIASSTMEAEFIGCY
TATKQAVWLRNMIKGLQVVDRIDRPLKLFCDNKAAVLFSKNNKRSLANRLMDTKYLKVRDEVKKGTIDIQHIGTTFMVAD
PMTKALSVGVFKSHVFNMGVKETFELINEWE
>Copia-24_SI#LTR/Copia 217-4170  [Solenopsis invicta]
MADSTIDLKNITKFDGTNFQLWKFQMKIVLTASGLMDIADGTTPKPEPATDNYAAWNTKNAKAMCILSSAVEYSQLEYLV
TCEDAAEMWAKLSSIHEQKSATNKLTLMTKFHEYKMASADSVAQHVAKIENMARQLKDVGEELSEVMIMAKILGTLPQKF
SPLITAWDSVSQPNQTKDNLIERLLIEEKRLSNFEEATTALATIKIHKKSGAAHASRSRKETQTTKDSRYEKEEISCRYC
RKRGHPEKRCYKKRDDIRNKRDSDNSAKEKDDNTANFGAFTISNDDFASRMLKHDSKEVWLLDSGASKHMCFRREWFSEL
DNSYRESVSLGDNSTCEVMGRGTIHIKMYVNGKWLNGKMDDVLYIPSLRKNLFSTGICTSKGYILKFESNNVKIIRDKSV
MACGIKQHNNLFRLLIKVDIVNEANAVSSNSLKTWHERLGHINCQSLREMIKKNLINGVSLSNSDKFFCESCQFGKQHRL
PFKSEKRFRDRRIGEFIHTDVCGPMSEASIGGSRYFLLFKDDKSSFRRIYFLTYKSETFEKFKEFEELIFNKFGTRIKTV
RADNGTEFCNNNMRNYFARHGITLQTSAPYTHEQNGRSEREIRTITECARTMLQAKNLPTRFWAEAVNTAVYILNRCISS
QTREITPFELWHKEKPNLSHIRKFGSDAFAHVTKEHRKKWDPKSKKLILVGYEGESTNCRLFDPLTNKIIITRDVIINEN
SDNDSNIKSDNASIKITSQDENIFEPLQNIQNDSTEPINEIDNSDRIKPVANTYNLRNRQSVKPPERYEASIAILDEPAT
FIEATTGENAIQWKSAIKKELEAHEKNNTWTLVSPPKDYNIIGCKWVFKIKENPSENVIRFKARLCAKGFSQKAGIDFTE
TFSPVVRYDSIRTLLAVAAHENLEIGQFDIKTAFINGILNEEIYMRLPEGIETDDHNVVCKLNKALYGLKQAARCWNKQF
DEFLQKFNFQQSNADQCVYLGQFENEKVYLALYVDDGLILTSSKDVLNKILQTLSSAFETTTGNGKTFIGMEIERDRLNN
TIFIHQKHYINRLLARFGMFDANPVSIPADHNVNLRSADTEDMTCCNIPYREAVGALLFLASVSRPDISYAVGIVSRYLN
NYDATHWNAVKRIFKYLLKTPEFGIVYNNSDNKFAIKLTGYCDSDYAADIDTRRSTSGFIFKITNGPVTWSSKRQATVSL
STTEAEYIAASMATKEAIWLRKFLSDIGRPCDNATTLMIDNQSAIKLIKNAEFHSRTKHIDVRYHFIREKLKNLDINVEY
ISSQDQLADILTKGLPRDRFKYLRNKIGIIDRQDALNS
>Copia-25_ST#LTR/Copia 167-4784 via tfasty with Copia-31_ST, 72.9% SW:3525, 2 frameshifts and 9 stopcodons. [Solanum tuberosum]
MAIDSTDELFGSTPPNTQQIDCNDSLYVHPSDTPGVSLVPQLLTGAENYSEWSRSVKIALLVKNKLGFIDGSCNREQCVG
DTYKLHQWDRCNAIVQAWIMASISKELRRGIVYSSSAHKVWATFKERFDKINATRIYHMHKEIGDLSQGTTSVSTYFSHL
TDLWDEFESIIPIPGCDYPRSRPFMEYLGLQKTMKFLMGFNDTYSPQRSQILMMDPTPSLNQVYSMIIHEESQLNGSSGT
LRSGSMEGLITANASHYRSNTYNNSLYCTYCHKQGHVKEFCHRLIGYPPNFQFTKQxKATRxSxxQHxFWQFIQYWEFIR
GGNYGNNNTTKQGQGINYNNGNSITRQGINHNDGQAYNNAGYKGKNPAYRGNVNAGEPSAHNANVSSGAAAQSSSQSIPV
IQTFTPEQYQQILHMLDKDKEPTDSANMAGKPLINQDYWIVDSGATNHMTSSLNLLSDPTSLPSPQxVHLPSGARTAITH
TGTSTLPTSQSIHNVLYIPDFQCNLLAVSKITRDLxCSVSFYHDFCLFQDLWSGVVKGIGRLHxGLYILNPSTHATTSHH
CLSSVSTTSPSYTAPTFDLPSPTFVSTSSLCHNRMGHAPYSILLKISSLKKHVVHPCDCFVCTLAKHHRLPFPTSTSMSK
NLFDLVHIDIWGPYRVFTFNGFRYFLTFVDDCTRMTWTYLLRLKSDSFVILQSFIQMVHTQYSTSIKHIRSDNGSEFFNQ
HCSSLFVSKGIIHQSSCVHTPQQNDLVERKHRHLLEVARALKFQAQIPLKYWGDCILTATYLINRLPTQVLSAKSPFECF
HGHSPSLDHIRTMGCLCYATTPNYSDKFSSKSIHAVFMGYSHTQKGYKLLNLETGTFLVNRDVIFKEHIFPFKYPKSLFL
NHLSTLLSDNSDVPSLLTTSSPIPSDFHSPTSVALSLPSNVTHPASLSPDSPITSHMQSPDQSTTSASPSPPALAPLPQR
KSTRSSKPSIWLTDYVYPPLPSSHSSLYPIDHFVSYSHLSSSFQFFLSAFSAHIEPSTYAQATQDQRWVQAMKLEIEALE
ANHTWDVVDLPIGKVPIGCKWVFKVKYNVDGSVERYKARLVAKGFTQQEGIDFDDTFSPVAKMATVRTVISLAALYSWLI
FQMDVHNAFLNGDLSEEVYMTLPQGFGSQGEQPHKVYRLLKSLYGLKQASRQWNIKLTEAFVQSGFIQSRHDYSLFTKSD
GDAFVVLLVYVDDLMITGNDLGAIKKAQHALHQKFKVKDLGELRYFLGIxFARSKEGIAMSQRKYALSLISELGLAGSKP
KKAPLEQYLKLTSIEYDANIENGMVDLPLEDSESYQKLIEKLLYLTITRPDISYSVQCLSQFMSAPKQSHYEAALNVVRY
IKKQPGLGLLMSSAGSPHVTAYCDSDWASCPMTRRSVSGYCIRLGSSLISWKSKEQSTVSRSSAEAEYRSMASTVAVLVW
IAGLLKELKVKIQLPMDLFCDNKAALQIAANPMYHERTKHIEIDCHFIRDKIQEGLVKTAHVSSKERMADTLTKALGHQQ
HDFLLDKLGMKNIFHSQLEG
>Copia-25_MLP#LTR/Copia 53-4564 via tfasty with TNT1, 60.8% SW:1399, 1 stopcodon. [Melampsora larici-populina]
MSDHGLVSTSAGNPPSSTHSQSEEEGNNTLLQITDSLLQSIRNPSNISPSSNLNNPPPSDSKMSAPLSQPVMQGTNKQLQ
AVYVNQALSKICPEKPLSDENYFIWSSEVRNGLDSLYYIEYIETDDIKDEPGSIIHEVARKFLTSWLLKQMDATNRSRFE
PKITTYTTNGAKTESLPARLWKSVEDHHGSRTNETRLLLERSLNLIVQSPSTPLSKHLEFFQLAATKFKNAGGKITNDDL
GQKLLISLNNAHFDDAKAIADQDITDYDKVVNALKKRMATVAMLRGNRPDRLIQHPPVQIMPEASAVSRNRFANKCTKKK
CLGINHSPDLCFKKPGNEHMQREWIAERIKLGQWKGEVPSNLPDASASTAVLDEPSIEDLEASFARMSPSASHVSTVHLR
DEVAKNAAENSIIALIDTAASHHMFNDRHSFSLYEDISNRHELLNLAGGTVTLPIVGKGSVSFKGPNGDIFKLHDCLHVP
ELKHSLICGTILIKEDFITVxEGDSFKISQAGKVAFVGHFMKNINLLQVKVSILTRSQPPQASFTDAISLHRRLGHPNVR
YMKMMLSEESVIGIGDLKSTVVPDSIDCNPCNLAKGHRISHSYSRERSKSLLENIHIDLSGIIRTPALCGSIYFILFTDD
YSSFRDVSGLSNKSSEAVFEKIRQYVALVERQCEAKVKNFTIDNGSEFINDLLVPWCEERGIYMRTTAAHTPEENGVAER
GNRSVKEKSRALMIQANMPIRFWLYAVKASVYLLNRTVSSSLPKGKTPYQLKYGSKPDMSHVKTFGCLAYVLIRKALCTG
GFGHVSRQAILLGHTNHNHNYEVFIIESNTIVLSHDVTFKEHIFPFQKLKPFNVSHLSVDDEDELLLTDPSTLAPDNHRE
QSDNELLPGGEGMHQETEPLVEQQIEGNTEDHLNNQLEDLVIDQDSGPRRSERLRQPVTRYTPSANFAFWNDSSSFTDEF
DLFHYAFSVGPIVRLIHEPATYKLAMKAPDKAEWLTACKKEMSNMKRRGVWRLVPRPKDHPVVGSKWHLKIKMNTDNTIN
KRKARIVAKGYTQTYGVDYLDTFAPTGKPVSYRVIIVYATIFGMEVHSMDAVAAFLNGRLKELIYMEQPEGFEEGEDGED
LVCLLYQAIYGLKQSAREWNDEFKTKCRAVGFVQSVADECVYIRVRGDNICIFYLHVDDMAITGNDIKAFKEEIKSLWEM
EDLGLSTCVVGIQTVRKGPHHYAIGQEAYTLSILERFGMMDCKPALTPFPGGTKLRRSTPEESAMFKRLNLPYRSGVGSI
MYLAQCTRPDISYAVGCLSQHLENPNKHHWEAFQHVLRYLKGTASFCIHYKYDLTLPKELSSNNSWTLPTYFSDADWAGD
KSTRRSTTGYVFMMAGGAISWRSRLQQTVAKSSTEAEFRAANEAGDEMIWLNVLLESIGLKQQYPQFLNCDSMSAIDVSE
NVVLHGRTKAIEIHFYWLREKVKDGTFQLRHVESEDMLADVLTKPLHPGPFRSFRERIGLRLIE
>Copia-22_SI#LTR/Copia 226-4172 via tfasty with Copia-24_SI, 82.9% SW:3733, 1 frameshift. [Solenopsis invicta]
MANSSTDSIDRIDLKTVVRFDGSNFQVWKFQMRAIFTATGLLKLVNGTETTPGPTEDRFDAWNARNARAMCYISSSMEHK
QLETLITCETAAEMWAKLSAIHEQKSAANKLTLMSRFHELKMAPNDTVVQHVAKIENMASQLRDIGEELSKVTIMSKILS
TLPQKFGPLVTAWDSVSEEEQTQSKLIERLIKEEGRLAAMDDATSTTAAMTVQQRRGRGTQRGKVDPKSNVDKDSLETKK
TFVCHFCKKRGHISRYCYARKNASKDNKNSEKTNVENSADVSAFIVSEAKVIADLLDRDAKRIWLLDSGASKHMTYQREW
LHDFHETTNETVSLGDNTLCEVRGYGTVAIKTLINGEWKLGKLENVLYVPTLRKNLFSTGACTNKGYSVIFNEKTVEIKD
SNILKIRGVQQSNNLYRLLIETTTINNANVVEENAFEIWHKRLGHINDKCLRKMIEEKLVTGIKPCSYDKCFCENCVLGK
QHRLPFKNASKRKSKIGDLIHADVCGPMSERSIGGSRYFLILKDDCSGFRKVYFMSHKSDTYDRFKEFIASFKNAFGHDI
KSLRADNGTEFTNHMMRDLMKKRGIVFETSAPYTHEQNGTAERDIRTIVECARTMLIASGLPKCLWAEATNAAVYIINRC
IQSQSRDVVPYELWFKRKPDLSHVKIFGCVAYAHVPKELNKKWEPKSNKMYLVGYHDESKNYRLFNPLTNKVIVSRDVIF
NEKARYNKNKEEHDISFDIRLNDSSEKGNDNYEIEHIGDNDEPESIVVGTNKSYNLRNRDDLKRPDRYEACIALFDEPTT
YKDAINGKNSKEWTIAINEELQAHERNNTWTIVDFPKKEKNIIDYKWVFKQKPIVCEGRETVRFKARLCAKGFSQKPGVD
FNEIYSPVVRYDSIRLLLAIAAIENLEMRKFDIKTAFINGEVEEELYMKIPEGINVSCDKVCRLNKSIYGLKQAARCWND
RFNNFMRKFDFKQSESDRCVYFGKFEKKRIYLALYVDDGLVLADCTVVIDHFFTELKNTFEITESEVNSFVGIEITRNRD
KRTIFIHQSSYINRLLKRFNMCEAKSVSVPSDPHVILKIPDCEWEKMDKTPYREAVGGLLFLAMISRPDVSYAVGLVSRF
CGKFDLNHWNAIKRIFRYLISTENYGILYHGDDTSDIKGFSDADFAGDIETRRSTTGYIFRLAGGAITWASKRQATVSLS
TTEAEYIAASTAIKECIWVGKILSEIGFRCNAKPITLHVDNQSAIRLIKNPEYHSRTKHIDVKFHFIREKYDKRIIDIVY
VSSQDQFADICTKAIAKEKFEFLRSKIGVVRPLDNK
>Copia-19_GM#LTR/Copia 121-4481 via tfasty with Copia-100_GM, 84.0% SW:4793, 1 frameshift and 3 stopcodons. [Glycine max]
MSERDLQTPGVDSFLYLHPSKNPAVSLVSPVLDSSNYHSWRGSMMTALSAKNKLEFIDGGAPEPLKVDRTYGAWRRCNNM
VVSWIVHSVSMTIRQSILWMDKAEEIWKDLNSRYAQSDLFRIFDLQQEATSIRQGNLSVTKPFTKLRIIWDELENFRPDP
ICPCNTRCTCLALNIVAQRKLEDKAIQFLKGLNEQYGNVQSHVLLMDPLPEVSRIFSYVAQQERQIGSNLIAANNIDMKG
SLINAVKLACNYCGKTGHTENVCYKKHGVPSNNSERNKSSSHRSGNVCTYCGKMGHTIDVCxKKHGFPPGYRFSNPRRSA
NSLVAGDDAVTNDQTQLLESKEIRFSLEQYKALLALIQQPTDGNSANMSSNLKQIASCSADTTPAHGKSLSFVNHTHTLN
IWILDSGATDHVPASLDLFKSYTQLNPPTVVRLPNGHHVTATYSGDICISDSIILSTVLYVPSFSFNMISISKLVSTNSC
KLIFSSNSCLMQDVITQAKIGTIEVRNGLYYLTPNYMAISNIETNIVHPHCTITPIDLWHFRMGHLSSERLRNMQSTYPF
VKLDKNFVCNTCHYAKHKRLPFPTSNSHASNSFELLHIDIWGPCSKVSMLGHRYFLTIVDDYSRFTWIFLMHVKAETREH
IKAFIALVETQFDNKVKKIRTDNGLEFLMSDFYSLKGIIHQTTCVEMPEQNGIVERKHQHLLNVTRALLFQENLPNSFWC
FALSHAAxLINCIPTPFFKNASPYEKLFGSSCDISNLKVFGCLCYISTLSAHRQKFDPRAHPCIFLGFKPNTKGYLVYNL
HSNDLVVSRNVIFYENHFPSQPETQQSQPLVSPTPFVLDHFPFETHDVVPISLPTSSAHIENNSATPLRRSTRDRRPPTY
LHDYHAFLIATANTNSASVSHPLGYSASVCHPLDFVLSYLHLSSSHRHFVLSISTSTEPKTYDEASQHGCWLKAMQAELQ
ALQTNNTWTLTDLPANKKAIGCRWVYKIKYHADGSVERYKARLVAKGYTQMEGLDFLDTFSPVAKLTAVRLLLALAAIHG
WHLRQLDVNNAVLHGELNEEVYMQLPPGMQLSHLNQVCRLQRSLYGLKQASRQWFHRLSSFLLTHGFTQASTDHSLFLCF
NDNSFTALLVYVDDIVLIGNDIMAINRITIFLDQTFKIKDLGTLKFFLRIEVACSQQGIHLCQRKYVLDILSDSGMLACR
PASTPMDCTTRLQAGIGDPLPVEDSSSYRRLVGRLIYLTNTRPDISYAMQQLSQFMANPTTDHSKAASRILRYLKSSPGC
GIFFPTTGSTRLQAFSDSDWAGFRDTRRSITGFSIFLGNSLISxRSKKQSTISRSSSEAEYRALATTTCELQWLTYLLQE
FRIPFTQPANLFCDNRSAIQIASNQVFHERTKHIELDCHIVREKSLNGLLKLLLVRSSMQLVDVFTKPLSPTQFKTLVSK
LGMMNIYSQLEEGS
>Copia-19_CQ#LTR/Copia 129-4007 [Culex quinquefasciatus]
MDANRFSIQKLNNDNYSAWRFKVELLLVREDLWRCVDPGTKPAAESDETWKALDAKTRATVGLLIEDNQHGLIRGAATSK
AVWTALQEHHMKTTLTSKVSLLKRICDKRFADGEDMAEHLFAMEELFDRLKNAGQPLADTLQVAMILRSLPRSFDTLTTA
LESRSDADLTLELVKRKLLDEVAKRQGSAGSDSALKVGAYGRSSKKKTLVCHRCKMEGHKQYECPQRGRHVDGDTKARRT
KPKKEDSVSFAFVAGGGAVADVTKPWVIDSGATSHTVADRCFFSELKNSEVHVALYTPGLAMNLLSVPAIVKKNAKVLFD
AGGCRILRGETTVAVGVLKQGLYHLKQPEEVAYAASGHHNKDCKHVWHRRFGHRDLAAIARMEAENLASGLRVFDCGVDE
PCGSCLKGKSSRKPFPAESTTSTKATLDLVHTDVCGPVEVPSVGGYRYFMTMIDDYSRFCVLYLLRNKSEVSDRIAEYVA
LVKTLFGRKPKTVRSDQGGEYTGEKLRNFYKQEGIQAQFTAGYSPQQNGVAERKNRYLTEMVRCLLFDANLPQCYWAEAL
STAVYLQNLLPTKAVKSSPFEMWHGTKPDVAKLKVFGCKAWVHVPKEKRKKLTGTARELTFVGYSLEHKAYRFLDRSTQK
VIVSRDVRFVESASAEVGHQNGDAKPVTVTSREETVVFDSVLNKPVPKPDEPALEQERAPEAEPECPMDGDNPAELDAEE
EDASFRSALSDEEEFNGFSDVSPSSSTEDTTNKTGSTTPLRRSDRLTKGIPPERYQNATNVTKHTVREPRSYLEAVQGPE
KAAWLAAMKEEIKSLQENQTWELVELPPGRKLVGCKWTFKKKEDESGRVVRHKARLVAQGFSQRYGTDYDEVFAPVAKQT
TLRTLLTIAARDDMLVRHLDIKCAYLYADLDESIFMKQPPGFQSDDNLVCRLKRSLYGLKQSARVWNAKIDGIFKQMGFQ
PGVADTCLYVKKTDKQMSFIAIYVDDMVIFCHSEKEFSRIRTTLEGQFKLSTLGELRQFLGIHIEKIDGHYTLNQRSYIE
KLLGRFGCEEAKPSKIPLDPGYVKQKEETNLPTNTSYRSLVGSLLYVAVNSRPDICIGTSLLCRKVSNPSDRDWTEAKRT
LKYLKGTKDLRLHLGNGDAGLECFVDADWAGNEGDRKSNSGLIIKFGGGVVSWSTRKQTCVALSSTEAEFVALAEGCQEL
LWAKKLLNDLAEDNQESVVVWEDNQSCIKMVESDRVERRSKHIDTKYAFTKDLHQRGVIDLRYLPTDEMVADVMTKPLDR
TKLELHRNTLGVK
>Copia-20_BG#LTR/Copia 72-4317  [Blumeria graminis]
MSNNWDEYPESISTGDKAAQNCFYSYGDAKLSGSENWLAWSDTIRNDLDVFDYWRFFDGSYPRPPDLKSKDATEISKRSK
QQVAWDREARQAHHYLKKTIHQDQWAKLVKMRPTDPVGAWKLLNDIYRPRKATTILVALKNLIKTNCSEGSDVADYVARQ
ETANEEIIRLGEDFPDKYFALLLLSGLPSSWENWRSTIFARLQNVEELQSAEISSLIREENDRRLAQEDEDVQFANVARN
LPVRSSDENQTLKPEHDIDGKCYNCHKAGHGWLSCWSSGGGAHGKGSKQRSQKTKQNKARQNTLSNANSVISNTSQEEEI
LEVGYVFTATPGNQDNGHRSIQIIADTGASIHVVPDRNMLINFQPNKETIIGIGGASLTHGTGDVIIEATVGNCISKLIL
TNAKWVPTINNVLLSIGKFTNKGGKFTIQEDGCKLMDSNLKCLATGIRKHNIYFLNGRVLTHDESQIANIAKYPSWDEVH
RRLGHISVTSMKKLISGNHVTGLPIDQKSPAKIHCDSCCAAKALKLPFKNISSSRSTCRGERFHTDLWGPSSVQSLGGKS
YFISFIDDKTRYTTIEFLKQKSDAANAIKNHIAWITNQTGKPPQSVRSDNGGEFLAVSSFLKAHGIEHQLTAPYSPQQNG
TAERLNRTLVEGARAMLVEKNIPKNLWAEAVLHMNYIRNRVSTNSNPDGKSPFEMWTGRRPDLSHLYEFGSKVWILDENR
TSKLDPKAKQFIFTGFNDGSRSVRYFKANLNKIMISRNFQFESSTNGSTEFEDYQSNSPDLDDSSIEGEAKNYINLESPV
TKVDTEGSIHNNESNENIVGPQTQDEPVKNETQSNLPLPRRTGLRERKQIDYSKLHDPKYSSGKNKTNSEQATDLHAGYT
EIVGVTRDILCGFTAYDTQVPDRIDQAKRSSEWPHWEMAIMDELLLHQNYGTWELCDLPAGRKAIGSRWVFVKKFVENGD
LSRYKARLVAQGFSQIPGQDYSETFSPVMRLDTLRILCAIKVIQGLIANQMDVKGAYLNGSIEVEIYMRQPPGYDSGNGK
VCRLRRSLYGLKQAGREWNKRLNKFLTDIGFQRATKEHCVYSRKDQNRFDIVGVWVDDMYILSKSQKDMSQIKRQIHQEF
ESTDQGVPKYMLGIEIEVDEKNHSICLSQEQYIKKIIERFDLNHEYTSDIPMSPHTKLILATETEELIDATKYRSAIGSL
MYAAIATRPDIAFAVNTLAQFNVRPSRVHWDAVIKIFRYLKGTAKLGILYDRCQGAATIETTGFTDAGNGTNTAVGCPTT
GGVYLMAGGAIKWISERQRGATLSEMESELVASCKTAQAGIWIRDLLEDLGIVQGPINIWIDNSASTRVIENPESHKRAL
HIQRKHFWIQQQCEQGVVKLHSVETSKNIADILTKPLARPSFEKHRENLGLSNCRG
>Copia-20_Mad#LTR/Copia 107-4278 via tfasty with Copia-68_Mad, 1 frameshift and 2 stopcodons. [Malus x domestica]
MAGSGSGDLRAPVFDGTEFEFWKVRMVTIFKSYGIWKLVDKGIVIPDSKKKGEKKKTKKEKDEEDSSSSDDDEGDDDELD
AHMEDQLMKDAKALGIIQSAVSKEIFPRIVNQETSKGAWDLLQEEFRGDEQARSVKLQSLRREFEYMRMKENESLSVYLT
RLFELINQMKSYGENLTHQREVQKVLISLSSKYDPICVVIERTSYLNTVTVQEVVGSLKSYELRLSRHVDEITSTEHAFS
TMGLVPKAQNRPLTQGNHSKGKKNWKSMSRKWENNTRQPERQGEITEGVKQKCKICDKAHHGECWFKGKPKCHNCNRFGH
VVRDCHQPKKNHTANYLNHVQDNAMMFYACHKASVQENNGVWYLDSGCSNHMTSTESLMINIDRSIRCKVKMGTGELVDS
VGKGTLIVETKRGTRFIPEVMIVPGLDENLLSVGQMVEHGYWLLFGNFMACIFGDRELQDHIATVKMKGNRCFPLMFNHV
DHIVANIATTEGNTWKWHRRFGHLNYDSLRMLQERSMVYGLPYLKEYNQVCEGCATGKAHREAFSKEQKWRAKLPLELVH
TDVCGPMSETLGGSRYFLTFIDDKSRMCWVYFLKCKSKVFRIFKMFKAMTELQTGYKLKKIRSDRxGEYTSLEFERFCED
VGIEKQLTVAYSPQQNGIAERKNRTIVEMARTMLYEKKLPLKFWGEAVHTAVYLLNRCPTKALENKTPFEEFCGRKPGVK
HLRIFGSVCYTHVPTQLRQKLDINGVFVGYGTREKGYRVYDLKHNNIIVSRSVIFDEDAALNWENMETVHFSVPFSEANE
GISITEIENGVCEETNISSSGLSCPNTRSEYVSSVHNDAPNTVNMESEIPLTETYDNTPKKWRDLNEVFAQCRLSVIEPE
NYIEASQDEAWKKAMDEEITMIEKNDTWRLVDRPSDKPIVGVKWIFKTKLNLDGTVQKHKARLVAKGYTQKPGIDFNETF
APVARLDTIRTLIALAAQKGWKLYQLDVKSVFLNGILEEEVYTDQPDGYIVKGEEHRVYKLKKALHGLKQAPRAWYSNID
THLLQSGFKKSPSEATLYVKHVDGQGTLIVSIYVDDIVYTGSCLEMIEDFKCDMMNKYEMSDLGLLHHFLGIGVIQQEGS
IFIHQKKYALSLLDKFGLKSCKSVSIPLPPTDKLRKGDGSEAADEELYRKIVGSLLYLTATRPDILYSACVLARYMHCPS
IKHLGTARRILRYVQxTVDYGIKYEKGNAALLIGFCDSYWSGDEDDMKSTSGYAFSFGSGAFSWASVKQQSVALSTAEAE
YMSASKATTQATWLRFVLHDFGEELIEPTPLMCDNTSAIAMSKNPVFHQRSKHIKRKFHFIRDAIQEGTIDLQYCKSEEQ
LADIFTKALAKDRFCALREKLGVISVKTLEG
>Copia-20_EPa#LTR/Copia 74-4177 via tfasty with Copia18-PTR, 81.6% SW:4049, 2 frameshifts and 1 stopcodon. [Eutrema parvulum]
MSGEGQSMLAIPKFDGDFEHWSMLMENLLRSKEWWDLIERGYVEPARGEILNGAQRQELADKKLNDLKVKNYLFQAIDKS
ILKTIIQKDTAKQFWDSWRTKYQGNERVQKAQLQRLRREFEILEMKETESIADYFSRVLLVATDMRNLGEDMQDTMIVEK
ILRTLSEKFTYIVCSIEESKDIDSLSVDALQSSLLCHEQKITRHTKGSGGEEQALKVTYEANHLSGTREGSSRGRGRGRG
RGRHFNKALVECYKCHKLGHFQYECPSLEKQANYVEFNDEEELLLMAHVELKQTRMEDLWFLDSGCSNHMTGTKRWFSEI
DESFRHSVKLGNDTRMMVQGKGSIKIKVDGLIQVIKDVYYVPDLNSNLLSIGQLQERNLAILIQDGMCKIFHPSRGIIIK
TSMSTNRMFVVAAQVMGAENCYKIESGGDTHLWHCRFAHLNYKSLQVLSSKGMVNGLPQIGSYKKVCRNCLVGKQKRESF
PKRSNxRASKNLQLIHADICGPITPSSIGQKRYVLTFIDDHSRKMWSYLIAENSEAFQMFKNYKASVEKESGLTICCLRT
DRGGEFCSKEFEEFCKSHGIKRQLTTAYTPQQNGVGERRNQTIMNLVRSTLSERRMPKEFWAEGVKWITYVLNRSPTNAL
QDQTPEEVWSGLKPNVKHFRVFGCIGHVHIPEAKRTKLDDKSCKCVFLGVSEESKAYRMYNPISRKITVSRDVVFEEEEN
WDWGRKNVEEATDPSTLLTWENDDNIAGEEEYLHEDVGEEPAAEEEPAAEEEFFHEDAGAEPGAEIIPAGTYDTEAETTN
VADTNVADTNQRIRRRSVRERAAPSYLREYECGQALINMEDTACFVDDQSSQVVTATGDPVTYEEAVQHLEWRQAMRAEL
ESIEKNETWELLEVPKGIKTIGVKWMFKTKYNEDGEIDKFKARLVAKGYAQKFGVDYNEVYAPVARWDTIRMLIATAAQR
NWIIYQLDVKSAFLHGELHETVYVDQPQGFVKKGSEGKAYKLRKALYGLKQAPRTWLCKIESYFSREGFKKCDFEHTLFI
KTEQSQILIVSLYVDDLIFTGNCENLITRFKESMKNTFDMTDLGKMRYFLGVEILQKEEGIFMCQRKFAKEVLERFGMDS
SNGVNNPIVLGVKLSKKGGGAVLDTTLYKQKIGSLMYLTVTRPDLAFVVGLASRFMENPTEAHFAVVKRILRYVKETIDL
GIKYRRGGNQSFQAYTDSDYAGDLDDRKSTSGSVFLIAEGAVSWSSKKQSIVALSTTEAEYIAAVSCATQGIWMMRILSE
FGEKYEECITIKCDNSSAIQLSKNPVHHGRSKHIEVRFHYLRDLTKEGKVKVMHCGTEDQLADIMTKPLKLETFRKLKKM
LGLVDVPK
>Copia-26_CQ#LTR/Copia 86-4153 via tfasty with Copia-113_AA, 83.0% SW:3883, 6 frameshifts and 1 stopcodon. [Culex quinquefasciatus]
MSTRRSPVRDPARNGNGGAGNGGNGAPLAQVGRNVRVYGSSVAMPAIEKLKGRENYSTWAFAMRMTLIREGSWPAVKRRA
EGDIVAEDLKERALATICLGLENNNFGHVQDEEDPEEAWGKLEAAFQDSGSARRVGLLRKLTSVHLDDCASVEEYVDEVM
TASQRLAAIGFKVDDSWLAGMLLMGLPEHYEPMIMGLEASGKAMSADAVKSKILQDVKHERGPKTPGADGALYQGYKFES
NQGAAAVKIEKSDACYKCDKPGHFAAKCPEKRITKNRSLQPGSARTRRVVSRAGAWYLDSGASCHLATSEQNFTDEESVQ
FVVGTANNGSMTAVSRGNVALDVSDGSLDVRGVLKIPDLASNLLSVSTICKEGHTVIFTAKQCEVLGEDGKQVVFSGVEE
GGLYRLERPERSFLVSKLELWHKRLGHLNVGSLQKLKRMADGIEFQEGVLPDCVSCFEGKQTRQPFPSSSSRATELLELV
HSDLCGPVEVPSLGGSRYFMTFLDDASHKVTVYFLEKKSQALDAFKRFKARAERESGKKLRVLRTDNGREYVNADFRKVL
EQDGIGHQTTCPYTPEQNGRAERLNRTLVEKARCMLNEAKLGKEFWAEAISTAAYLVNRCPTRTLGDMVPEQAWTGKKPN
LKNLKVFGSSVMVHIPKVRRQKFDPKSRRGTFVGYCEGTKGYRVYDPETGDFVISRDVVAIEEGSSNKSVACELILKPVE
FMELHFVEAMQPELPIEREDVVRDRRDEGDQAGVIEIGHEDPPPEEPVEALVDFLEGALPSQPGTxPAAQQQGFTRRSER
ERRTPGKYNEFNCYGTFSGQNVSPQSAATSPMQSVIVEMEDPKSYEEVLRRADRDRWIAAMQEEMNSLSENRTWVLADLP
NGRKAIRNKWVFKTKRGPDGVVQRYKARLVVKGCSQRPGVDYDEVYSPVVRYATVRFLMALSVKYNLDIDQMDAVTAFLQ
GELNDEEIYMLQPEGFVDAGGRVCRLKKALYGLKQSSRVWNTQLDAALQDFGLHRSAVDPCLYWSFQGDKLLFVTIYVDD
FLIFTNDLNMKKKLKANLNKRFKMKDLGQASHCLGIRITRNREDGKLWLDQQAYVEDIVKRFGMADCYPVAMPAEPSLRL
DKTMSPGSKEEAEEMHKVPYKEAVGCLSFAAQVTRPDIAFAVNMVSQFAANPGKQHWDAVKRIFRYLKGTANKKLEYSKE
GADQIRGYTDADWGGDPDDRRSTTGYVFTLQGGAISWNVKKQPTVALSSCEAEYMALSRTIQEAMWWNNLRAQMFKVEPV
DLYCDNQSAIAIASNGSYNPRTKHVSIRYHFVHESLQHGLVKLGYVSTVEQPADGFTKPMNSQKQTKLCEAIGISD
>Copia-31_CQ#LTR/Copia 122-4294 via tfasty with Copia-126_AA, 1 stopcodon. [Culex quinquefasciatus]
MAHATGPSPVVERLLGRENWCTWKFGMQTYLETEELWEAVEPNLKDDGTPEAIPKAKDRKARGKIILGLDPSLYVHVQGT
TTAKGAWDKLEQTYEDNGLTRRWGLLHKLMTMNLTNSVSMEAYVTRMVATANQLGGVGFPISEEWVGMLLLAGLPQSYKP
MVMALQNSGSKITGDLIKTKLLQEDHEPMETIEPAFAVKGKPSYKQENIGKPQSKGPKCHSCHKFGHIARDCPAKSSSKP
PERKGGSKPGRAFGAVLTTMDEMKSEDWFFDSGATCHLTRTKSLLRDAHQADGKMFAANKGEMQVVAEGTAVLHPTCGEE
IDVNGVQLIPELVVNLLSVGKIVDSGHTVVFGQKGCEVLDLEGTCIATGSRSNGLFKLEQDVPKVLVCQPTTVELWHKRT
GHLSIKNLTRLRNGMVTGVQFLEADSAAGCKICPMGRQTRLPFNKSGTRATEVLELVHSDICGPMEQVSIGGSRYYITFI
DDRTRKMFIYFLRHKSEEEVTRCFKDFHSMSERQTGHKLKVLRTDNGTEYKNKGFEKLLSQLGIRHQTTVEYTPEQNGLA
ERANRTIVEKARCLLFEANLPKTFWAEAAAVAVYLINRSPCTGIQTTPEEAWTGRKPDLSNLRVFGTTTMAHVPKQKRRK
WDPKAVECILIGYDEETKGYRLYNVKSKQIFMSRDVTFLDEGLADCDGRTTLKATNGPQSTYVRLDFEELVQEPEPVREP
EPAQEPEPAQEPEQVEEEEASDTSSDEFEDADDSVTLPALPPRQSSHPPQSQALRRSGRERAIPGKYKDFNVQCSGKRSS
RVSDAPMMDGSSTSAARLENAASTAPPSSSNQRPVDDVFQHGLMLNDRGCPPHGKYSHVDVHDGDTGSNCSQRNLDDPCT
HQEALTRDDSDRWRRAMQEEYDALISNGTWEMTELPADRKAIRCKWVYKTKVDADGKVDRYKARLVIKGYSQRKGVDYEE
TYSPVVRHSSLRYLFALAARMNLQIDQMDAITAFLQGELTEEIYMEQPPCFDDQDKTNVCRLKKALYGLKQSSRVWNLKL
DAALKKFGLTCADYDPCVYYKVVGEKVLFLALYVDDLLIFSNCKRWRKEVKDQLCGEFRMKNIGPAKHVLGIRVSRTKDS
VSLDQEAYVEFVLARFQMSNCKPVATPMNAAENLTKSMEPTDPEEAKRMANVLYKEAVGCLMYLGQCTRPDICHAVNVLC
HFNDNPGDKHWNAVKHLMRYLRGTSKFKLTYRKDGNADIKGYTDADWAADCEGRxSVTGYVFIAQGGAISWCSKRQQTVA
LSTCEAEYMALSATVQEALWWKRLRARIEKNEEIVIYCDNQSAIAVSKNGGFHSRTKHIDIRHHFIRDTLDRGDVEITYI
NTEVQVADGLTKPLQKQKLELHRAAMGLQDH
>Copia-30_Pru#LTR/Copia 86-4098 via tfasty with Copia-35_Mad, 89.2% SW:5686, 1 frameshift. [Prunus persica]
MTSEGNFVQPSIPRFDGHFDHWSMLMENFLRSKEYWSLIETGYEEPMTGARPLSEGQQKELEALKLKDLKAKNYLFQAID
RTILETILEKDTSKKIWESMKKKYEGNARVKRSTLQALRRDFETLEMKVGETIADYFARVMSVANKMRVYGEAITDVTIC
EKILRSLTEKFNYIVCSIEESRDMDALTIDELQSSLIVHEQKFHRSSGVEQALKVTTDERVGGRSRGRSNYRGRGRGRGG
QAFNRAEVECFKCHNLGHFQYECPKWDKEANYTEVNEEDEMLLMSYVESHEVKRNDAWFLDSGCSNHMCGNRGMFTNLDE
SFLHSVKLGNNSRMNVVGKGNVKLLLNGVNHVVHEVYYVPELKNNLLSIGQLQERGLAILIKGGVCKIYHPMKGLIIQTE
MSVNKMFILLAQTPVPTNAQPERCLHTSSQDLSSLWHRRYGHLSHKGLRTLQNKKMVHGLPQFQASNTTCMDCINGKQHR
DDIPKISTWRASQPLELIHADICGPISPISNSGKRYTLCFIDDYSRKSWVYLLTAKCEALNCFKLFKKMVEKEKGLFVKC
LRTDRGGEFTSNDFNDFCKQSGIKRQLTTAYTPQQNGVAERKNRTVMNMVRSVLSDKRIPKTFWPEAMNWTFYVLNRCPT
LVVKNVTPQEAWSGVKPSVEHFRVFGCLAHVHIPDARRGKLDNKVFPCVLLGVSEESKGYRLFDPIARKIVVSRDVIFEE
EKEWDWGVNYEAQILLDLEWGENEENNEGEERVSENGDEDGNGDRGERSESEGSEEAQGREVGNSNGPDENEGRVRRAPP
YLNDYVSGEGLSEDEAHVAQVVATEDPFHFEEAVRNVKWRQAMDSEINSIEKNKTWTLTELPAGAKKIGVKWVYKTKYNE
HGEIDKHKARLVAKGYSQKHGIDYTEVFAPVARMDTVRTIIALAAQNGWKIFQLDVKSAFLHGELSENVYVEQPRGYEKK
GKEHLVYKLHKALYGLKQAPRAWFSRIEAHFINEGFQRCDSEQTLFTKRNREGKIIIVSIYVDDLIFTGDDEDMMSEFKS
SMLREFDMSDLGSMRFFLGIEVLQRADGIFICQKRYALEILKRFGMLESNEVNSPIIPGFKISKDEDGITVDETYFKQMV
GSLMYLTATRPDMMFVTSLISRYMAKPTELHLQAAKRALRYQKGTVNYGIHYKRSGDGKLLAFTDSDYAGDMEDRKSTSG
YVFLLSSGAVSWSSKKQPIVTLSTTEAEFVAAAVCACQAIWMKRVLKELGHGDEVCTHIKCDNSSTIKLSKNPVMHGRSK
HIDVRYHFLRNLTKEGSIALVHCGSDDQVADVMTKPLKVDAFQKLRSMLGVCEIADVN
>Copia-32_BG#LTR/Copia 240-5018 via tfasty with Gypsy-26_BG, 60.7% SW:2047, 1 stopcodon. [Blumeria graminis]
KNPSFCxVCTPKKMSGISNMKPETSSLSKQEEIDNFIKKTLKEFSTYNFKDDNLWEAYQDEFSDKTLDDFQAASRTVLRS
LRTYLRSHGVWVKWDRHTTMAVSLFNTLSEESPTEWTREDIMNSNETFDSVKIINVMKNSQNYSVQTKLGNPRMSTQEVP
KRSQSIHPSTDQAPQKKPSELSAYPITGYGRELSNLAKMYGPELKYQGEGDSFDYKLNIFMELCEKADVPELLYAKAYSI
MLSGSALTHYFSVTSNGHRSNFDELCTATRDYFEGPETKRTKIARWESLTLRLVITENIDKGKSTLECLQMLFTELRHLQ
LSFDIEYRSEKHLHTKLINACRSFPACQLACFKPSSTLTGLFNDLQSSISTVELNEGAQTSQLFTDRRYYKENSQRNAET
SRSNSHWRSHKSLGSSQKRCYVCKRPGCWSRNHTVSEQESAKKGFQKQMMSRINDRTDQLLAQYEGDPEDLSTSESELDN
QIETLVLDTTPPAETDKLDVLYNESFITSFGTILNPRETALNLADLSFQYAITGNDPTTPAIVTEDDPCNYLASSRYNSS
CFYGIIIDTGASKYSTGGLKQFQALQRIANITIDTTKAGAVNVQFGIGSSSSIGAIKLDTPIGVIEFHIVKADTPFLLAL
SDMDNLGVYYDNIQNQLITPSKKVKVIRRFGHAFLLWGIFLQSLISSSFFMNPCFLTDTELRRLHRRFGHPSAQRLYTVL
QRSGHNDIQKEHIDHLTKFCDYCQKHKGPPRRFKFKLQDDDIQFNHSIFVDVMYIDNNPVLHVVDEETRFQAARWLQNIS
AKHIWDAIRACWIDVYIGPPDYIVTDAGTNFTAKEFHQSAASMAISVKNVPVEAHWSIGIVERYHSLIRRVYKIISQELA
GAKISKEFMLQMAIKAINDTAGPNGLVPTLLVFGAYPRMTTLDPPNPSVIQRSMAIQKATNEIRKFRAENQVNSALNERN
GPNVEPVHNLPANSDVLVWREGNTGHLGEWHGPFKLINIEKETCKVQLPSGPTSFRSTSVKPYFRNSIDDPSSLQEQTKE
REHGVNEANDMPARIQRTRRPPARFCDEPSLSAFVNDTEPFQATSFQKSRQKEIDGLLERGVFIKVKPSDIPPGIRIFSS
RFVDEIKHQGTDKAFEKSRLVVQAYKDENKHFVLTQAPTIQRVSQRIILSLAAMLPVDLYLRDITQAYVQSETNLSRDFY
IRAPMELGGRGTILKVIKPLYGVPEAGNHWFFTYHQHHTERLSLKQSTFDPCLLYRNECDEGFGVVGIQTDDTLFIADKL
FAGEEQLQLDKAKFAAKERKILTESAPINFNGGHISRDSGSRSINLTQELQCRNLKPVHSEPIDIYGSRNKSRTSVSTKD
QFISQRARGAYIASVCQPEASFDLSYAAQTMDPDNNSIKKLNKRVLWQIKNQNRGLKFVPLDKNSLQLLVFTDSSFANNN
DFSSQIGFVIVLKDRHNKANILHWSSIKCKRVTRSVLAAELYGMVHGFDYGAAIKSTLDKILHIKVPLILCTDSKSLYEC
LVKLGTTREKRLMVDVMCLRQSYQRREIAQVRWIKGDSNPADAMTKSDCCNALKRLIDLNTIIVEENEWVERV
>Copia-32_SB#LTR/Copia 118-4345 via tfasty with Copia-21_SB, 1 frameshift. [Sorghum bicolor]
MGDGKSDMDKTFNPTANLTWPVLTRSNYQGWASHIQCNLEGLNLWDAIEKGEKAERRLDRLALGSMLRGVPHEMHSMLLN
KKTAKEAWEAIKTMRLGADRVKEVNAQKLLGEFEAMTFKPGESIDDFALRITKLVTDLRGLGEQSVTDARVVKKFLRVVP
AKYSQVAVAVEMVKDLKTLTIEDLVAHLRAAEERLEPSVDQVTEKAGKLLLTEEEWTARNKSRMMTDSSGSKYKGGGGGY
HNRDKKPWKPRKTGDGDAQDSGPSSGPPRRKGKCGKCGTYGHWRKECPLRKGQEEKQEAAHHVNQDGLNGALLVAQVCNV
MRTTTVGDQGVLLNQDRVFPSTYAVGSWVLDTGATNHMTGCREALASLDETVKGQVKFGDGSKVEICGIGAVTIAGKNKD
HRVLTEVYYIPSLRCNIVSLGQLEEAGCRVEIDRGVMTVYERSHGSLNMLVKAERKNRLYIMEVTLTEPICLMTKMDDIA
WLWHARFGHLNFRSLQDLGVKKMVEGMPLIQRGEQVCDGCALGKHHRKPFPGVSSYRASTGLELVHGDLCGPITPPTPGG
KLYFLLVVDNFSRYMWIELLKTKDEAFDCFKKVKAAAEVESGRKLKAFRTDRGGEFNSGMFVVYCNTHGIKHNTTAPYTP
QQNGVVERRNQSVVEMARCLLKSKNVPGQFWGAVSVAVYLLNRAPTKSLDGKTPFEAWFGRKPGVQHLRTFGCIAYAKRV
GPGVTKLEDRSVPGIFLGYEPGTKAYRVYDPVKRRLMISRDVIFDEKRSWSWGVNGTDAAIEPTDTDLAPVFLFPEDADE
VAVAGPTTGGGTENSEHTGGIDGAAASGSSVPATPTSPHTPAHSSGGNQIAWATPPTGAEEDSDGAPLRYRTLPDLLEST
MPVQLEYSGVCLIAAEEPSSVEQALTEICWRDAMQTEMQAIEANQTWDVSDLPRNQKAIGLKWVFKVKKDPEGNIVKHKA
RLVAKGYAQRHGVDFDEVFAPVARMETVRVLLALAAHGGWEVHHMDVKSAFLNGDLSETVYVQQPPGFVVGKGDKVLKLR
KALYGLRQAPRAWNFKLDRELTALGFVRSKLDNAVYKRGSKESFLIVGVYVDDLIIVGPKLEDINQFKLEMKRKFSMSDL
GLLSYYLGIEVKQRKGGITLSQGAYAVRILESAGMGHCNSSDTPMEPRFKLSKGKESDAVNVTAYRSIIGSLRYLVNTRP
DLAYAVGVVSRYMEAPGKAHWAAVKRVLRYIMGTTSYGCSYEQGTELKPVLLGFSDSDFAGDSEDRKSTTGVVYFLGNSL
VTWASQKQKIVALSSCEAEYVAAAAAACQGIWLSRLIADLLGTKQTPVKLLMDNMSAIALSRNPHHDRSKHIDTRYHFIR
ECIEEGKIEVEHVGTADQLADIFTKPLGRVKYVELRTALGVIDVQQLRG
>Copia-32_BRa#LTR/Copia 151-4290 via tfasty with Copia-95_BRa, 78.4% SW:3689, 4 frameshifts and 3 stopcodons. [Brassica rapa]
MAALASANDKPYGISQIKAYIPITLDMSKLNYDKWRELFETHCVSFGVVQHLDGSSLPTPETEKEWKERDGLVKMWIYGT
ISDSIIDTVLKKNATARELWLSIESLFRDNKEARALQLENELRTMVIGDLSVHEFCQKMKTTAALLANIDAPVSERALVS
HLLNGLSDKFDSINVVQHKVPFPTLLEARSMLQMEETRLSKQQKPTARHDDTSSSPTVLYAGSDGNPQNSNNNFNNSGRG
NKGRNRGGGRFRGRGRSSNNWQQQQHVNPYASPWYYQQAPPVYPPFNPYPAYHAYSPHFTHHQPRPGNTGYSGILGSHPS
TPSHQAHMAQQAAPPQMTQLPAALNHAFNTMTLQEPDNAWYMDSGASTHITATAGNLQSLFNTSTMPPVTVGNGSLAAVK
NTGHGIIASPSRAFTLRNVLVCPAIIKNLISVHKFVTDNLCAIEFDPFGFCIKNLQTRNTLLRCDSSGPLYxVTPSPPPF
SHSALSVTSLDSSVWHKRLGHPNNSILTRILSSFSSSIPKTDLTTLCQACQLGTRLPFFDSKTIVTSPFEIVHSDIWTSP
ISSISGMKYYFIFLDHYSHFVWVYPLHRKSETLSKYLHFSNYVxTQFNRQIKSLQCDNGGEYDNRLFKEHLASTGTLFWF
SCPHTSQQNGQAERMLRTINNMIRTLLFQASATLEYWVEALHTAAHLLNILPSTAINNDAPHTRLFKTQPTYQHLKTFGC
LCYPNLISTAKHKLAQRSTPCAFLGYPQDHRGYRCLGLKTKQIILSRHVVFDEMVFPFSFPSTHSTACSTPLITPSPIIR
PTTTPTAPPPSPPPSPHILSPQPPTPKIDATPPAPQNTHSMVTRGKSGIIKPRLPMCLHTDNSISLLPISHVQAAKDPVW
NCSMNLEHDAHIKKGTWVLVPRPKDTNIVRSMxLYKHKFNADGSLKCHKSRLIANGKSQQPGIDCDETFSPVVKPATIRT
VIHIALVRGWPLHQLDAKNAFLNGDLQETVYMHQPPGFVDKSKPNHVCLLKRSLYGLKQAPRTWNTRFASYARRLGFRQS
TSDNSLFVLCSGSDLAYLLLYVDDIILTASSTSLLHHLIKCLSSEFEMSDQGPLHHFLGITLKRDANGLMLHQQNYAADI
LHRANMANCNPCLTPVDTKQKLSADGSKPVSDPTLYRSLAGALQYLTFTRPDIAFAVQQVCLFMHDPREAHFHALKRILR
YVKGTISHGIKMTRSQSLSITAYSDADWAGCPSTRRSTSGYCVFLGENLVAWSSKRQQTISRSSAEAEYRGVANAVSEAT
WLRNLLFEMKIHISRATIVYCDNVSAIYLSSNPVQHQRTKHVEIDIHFVREKVQMGHVKVIHVPSAQQFADIFTKGLPSP
LFLDFRNSLTVRSSDAKTAG
>Copia-30_PIT#LTR/Copia 5-4297 via tfasty with Copia-4_PR, 65.8% SW:2369, 5 frameshifts and 3 stopcodons. [Phytophthora infestans]
MTSATTATAFATKLKQFNGTGFPAWGAQVKLVLEIKGLxADVEKDAPPADGLAAEAEALKVYDAAVAAGTSGTVAPRTPL
HEQVMRLKMASSIILSALTEKLAAEVYLFDHPLAMLRHLRLTYNVKCSASVGAAKREYMSLYLADGDSMTEHIKTTKRGL
ADLQEQRVYLADEEKRQSFMQSLGPAWNDFVGVLEMCPTFEAMVTRCQAEVIRRDQQKNRRSTNGSGKSNASNGAFSAEQ
VAGKKGKNKRDMTKVKCYSCQEMGHFARDCSKERVPPKGKGGEAASVAFSVHDVTDECKREWIVDSGATSHMTGHADNLV
GARELAEPRVPTVASGDSLVATAMGQAPLYKNGKEVCVLQDVLFVKGLARNLVSVEAASRRGMTVEFKGVGCAIRASNGV
TIQAAERTTKCTCWMLPASPGVHGCGHRQRTxCCIIIICIFSFNAQVxKAPVEDVAMMTSEAPHVETWHRRFGHLNVKSV
QQLLGELRVPWKGAVKQACPTCVSGKLSQKPFAAKDKRVLKKNQILLAIDYVGPMQVTSREGFTGMANVVVEPFHLDMVY
PLRVKSSQAQLDAIKDCIAKMKAYAPTYRVAFVKSDNAAEYTGGVFAAYCEKNDIVQEFSTPYSPQQNGKVERGNRVIVE
MARSMMLGANLPAVYWADAVVDAAVQYVRNSRPTKVLDGKTPMEALFGKAPDISNLRVFGCKAQALVPKEHRKNLDSKTR
NGIFIGYATGGAYLVYIPHHGTGEAITARTVVFYEYQFLPAEDGDEITISSQLDLLQLDAVTAPLLSRLETVEEEKQDVS
MATPGEEDVAMAPTPSAVSSNLETPGQPTSGSSQPVGAARRQARLRGDPRLEKAKNPVRKSSRIPRPSQRKLNYDESHLS
MEEVCAMVEERVFPAAVDGRSVRDGYIYSKLTPSDITNWALGVEPLNIEEVDASDDRSEWERAMDDEIQSLLDNGTFEEV
PLPPGRTAVKSKWVFKTKTLADGSLDKNKARVVAKGYSQRFGVDYTDTFSPVVRHSTLRLVLVIVVARRMKRMQLDVKAA
FLNSALDEEIYLEPAEGYKNADEHVWRLRKALYGLKQASRSWYENLRLFLESQGFYQGEADYCLFSKGSADDDNLMIILV
YVDDMLVFATHDEDLASFKAAMETTYDVNDFEDATYFLGLELQWSPSGEEVTIGQQKYAKSILERFNMDKTMPARTPMEE
RFRDQLVKAQEVINFRPRPAIGALLYLTVNTRPDMATAVRILAQEIETPTDCLKHGVEHVFRYLRNTQDFGLVYKSSAVK
RLVVYCDAAFAVERNAKSATGYAIFYDGCPIEWGSKKQSMVTLSATEAEYIAMGSGVQECIGINLALKDLGLEVDQITVF
EDNQGAQHLAESKVVTQRSRHIDTKYHWLREKVKEDHIRIEYCPTRGDHFTKALGATKFQYFRDRLAVRRVG
>Copia-28_Pru#LTR/Copia 77-5068 via tfasty with Copia3_LC, 72.7% SW:3710, 1 stopcodon. [Prunus persica]
MERDRVAGSCNSPPFFDGNNYAAWREKFEIFLDALDECASEYLTKEWVAPVKTVENAVVPKPRADWTEAEVYAAYSNKKA
RNALVTALSSTQFSHIQHIPNAKQAWDKLRVVHEGDDQVRTLKLQMVLAQFEELRMSETESISEFYGRVEMITNEAMSLG
QPIEELIVVQKILRVLPSRFRAKKTAIMEVQNLNEIKLGKLVGKLKTYEMELNMEENDTKKSKNIALQGVHVASPKGSEK
SSVFEDEMALFVKKFRRILKDKGKFAREGSFGSESHFRPSTDRSNERNKVVKPFTKDFRKSVKCFTCGGTGHYAADCANN
QKKYSKGKDKAMKVTWSESESEVSQEDSSSSDDDDQQVAFVVSVQPVSDESDSESDDQSYESLGRKYDCLFKETLSLKEE
SLNLEGNNQDLQHEILILKETKKELSDKFVSLEKEIATFVSIRSNLENQVNVLKASNIVFQNSNKQLLGELNEAKSKILS
MTIGASKIDRMLNMGKLHGDKGGLGFNHLDSSSSSFTTKFVKSKTPVTVPLDVQQVVKKSKFVPTCHRCGLTGHIRPDCH
RYSKDKTRNLPSKSKRNSRSLQDQVDHLLNEVTKIAKLVSLKMSSPIVPKSTWVAKGQTKCLVVLNAFAASNTNSWYFDS
GCSKHMSGDKSVFSSLTPFDGGTVTFGGGHKSQVVGKGTVCIPGLPELKNVRFVEGLTSNLISVSQLCDDGIVEVRFSKH
GCKIIGKGDNEIVSVTRSRDNCYCIDGVNDTKDVVCNKVVNETSVLWHQRLGHVNFRDLHKLSKRELVSGLPKLDKSDQH
VCEGCQLGKQVRVSHKKVKHIQTNVSLELVHMDLVGPIQTLSLGGKKYILVMVDDFSRFTWVSFLREKSDTFQRFKSVCH
LLQKEKMTSHLPLVRIRTDHGSEFENSQFLKFCDEMGIKHEFSAPITPQQNGVVERKNRVLVEMARVMLNSKNLAKHFWA
EAVSTACYISNRVFLRSGTKQSPYEIWKGKKPNVSYFRVFGSTCYILRDREHLAKFDSKCDKGIFLGYSTSSRAYRVYNY
RTKTIIESINVNIDDFAASTEMALDEDDLLPPPPVQEPPGLDLVVDLSSFGNPVPVDLSTSPASSSIPSVQVSSTHADHS
PLPQTESVIIGPLHQGVRTRKQIAQEISHVCYVSKEEPRNVKEALNHGEWFLAMQEELNQFVRNDVWYLVPRPTNTNVIG
TKWIFKNKTDEQGNIVRNKARLVAQGYTQMEGIDFDETFAPVARLESVRLLLAIACHLKFKLYQMDVKTAFLNGILNEEV
YVEQPKGFEDPHNPNDVFRLKKALYGLKQAPRAWYERLSSHLLGNGYVRGSVDKTLFVKRFKKDVLIAQVYVDDIVVGST
SDLHVQDFIHVMTSEFEMSLVGELNYFLGLQIKQNHDGIFVSQSKYAKNIVKKFGLEGAKSARTPMSTSAKIHRDLHGKS
VDHTLYRSMIGSLLYLTASRPDISFSVGVCARFQSDPKESHLFAVKRIIKYVSGTVEFGLWYTYDTCVNLVGYSDADWAG
CSDERKSTSGGVFYVGNNLVAWHSKKxNSVSLSTAEAEYVAAGSCCTQLLWMRQMLEDYGLAQSCFLIYCDNMSAIDISK
NPVQHSRTKHIDIRHHFIRDLVEDKILSLEFVPSVKQLADILTKALDFQKHVTLRQSIGLCSCV
>Copia-27_SB#LTR/Copia 23-4302 via tfasty with Copia-29_SB, 1 frameshift. [Sorghum bicolor]
MQYDGSVSPPREPPHKKFVVLKKSPPPIAMGDQGSSSGGVKESSLMWPMLTRDNYTEWEMLMQCNYEALEIWGVIDPGTN
PKRSQDRQAMSALLRSVPKEMWQTLGRQKTVKEAWEAVRTMRVGADRVKEVNAQKLLQEFENIAFKEGESIDDFGMRITN
LVGNLKTLGETIEDVRVVKKFLRVVPARFAQVVVSIEMFCDLKNLTIEDLIGRLRAAEERLDDKTDKVTDKMGRLLLAEE
DWIEKNKHRFLTGSKPGGGGAGGSTSKNKAAARSDGGASKPVKLTSEGTPRRKGRCRNCGIYGHWDQDCKRPRKDKKKEQ
APPEANVAVGGGDQVGALMLATCDVVHRSSQCVHLMEEKVVPVDVPTGVWVLDTGASNHMTGSLSALSQVDSSVQGTVKF
GDGSTIRIKGMGSVIMQDRNQNHKVLTEVYYIPELKSNIVSLGQLEEKGFRYVGENGKLCVYDQDRTLLISAPRIENRLY
LAKFSLTPPVCLLAQSENLSWLWHARFGHLNFRSLNMLGAKSMVVGMPCVKEVEKVCDGCVLGKQHRKPFPQVSNFRAGK
GLELVHADLCGKITPESIGGASYFLLVVDDHSRYMWIEMLKSKDQAFECFKKIMLRAESESGEKLKALRTDRGGEFTSNM
FSVFCNNGGIKHYTTAPYTPQQNGVVERRNQSVVEMARCLLKAMRVPSVFWGEAVRTAVYLLNRCPTKALSGKTPFEVWH
GKKPVVSHLKVFGCVANVKKVGPGVNKLSDRSSKMVMIGYESGTKGYRLFDPSSNRLVVSRDVLFEENVPWDWNNPQCST
DQQVTDSFVVHYELSDQNLTTGQNAENAGTPVTAQGGEAPADQGSNVSHNHSPNSPNAPGSNAAPTMQYATPPSQHSEDT
YGGPLRFRRLDDIFDNTEELEEYEYSGVCLLAADETVSVDEALEEKCWVEAMNSELRSIEENNTWCYTNLPKGHRAIGLK
WVYKVKRDPEGNIVKHKARLVAKGYAQKYGVDYEEVFAPVARLETVRLMLALAASGRWEVHHMDVKSAFLNGELQEEVYV
QQPPGFQNSKQPGKVLKLSKALYGLKQAPRAWNAKLDQELVKLGFCRSSEEHAVYKRGSGINLLLLGVYVDDLVICGPDQ
NRIHEFKQQMSKTFSMSDSGLLSYYLGMEVRQKPGEITICQRAYAAKIVEQCGMTGCNPVDTPMEQNCKLIPGRPELARD
VTKFRSIVGSLRYLVNTRPDIAYSVGMVSRFMESPTSEHWAALKRIVRYVAGTTQYGCKYTCKSLLNLKLLGYSDSDHAG
DLEKRKSTSGVVFFLNGNVITWTSQKQRPVTLSSCEAEYVAAAAAACQGVWLVRLIADLTGQNLQKFKLLMDSKSAIELS
KNPVYHERSKHIDTRYHFIRECVADGIAEVDHVGTDRQLADILTKPLGRIKFVEMRQQLGVGNMCHD
>Copia-29_Mad#LTR/Copia 940-5074 via tfasty with Copia-52_Mad, 1 frameshift and 4 stopcodons. [Malus x domestica]
MCAEREADSMVNILTHNFSGLYMQGSSSQSSDSQGSSSNSNNVPFTTGGTITRVPNNAPPVSMPFISQGSTAMHTQPPGH
IFPHAPYSIDGSLFPQVPYSPTSYMMPPSLPPIYPDFPNVYGFIGTGNLPRPFPNSNNGSRSFSGSKPNEGYRGSNFGNG
RGQFSGPKQSGGTWQFWSGNTDTKLHIVPECQICSKHGHTAPNCWKRSTSPSSMGQVVACQICGKRGHSALDCHRRNNFA
YQGTAPAPSLTAIQAQAPSNLLPQDSWIKDTGASHHITADLNSLQQVTSYASTDKITIGNGEGLQIKNIGSARLHTLPQS
LILRTVLHVPTIAVSLLSVKQLCKDNFCWFICDDNDFFVQDKVTKVVLYHGRTNEGELFRIPVKLLSKSPSQKSVALLGQ
KIKSEVWHQRCGHPSNEVLSVMLKQSNIVSSPDTHQHLCSCCISGKMSRLPFHDRTESCNFSFQKVHTDLWGPSPTTSIE
GYKYYVSFVDEYTRFVWIFPLINKSKVFDVFQKFYSFVFTQFNIGIKCLQTDGSGEYISRRFDDFLKHKGIVHMISCPYT
PxQNGLAERKHRHIVETAITLMTTAxLPQDLWYHACAHSVFFINRMPCKVLGMQSPYQRLYGVSPxLQGLKVFGTAVYPY
IRPYTVNKLQPRASLCVFMGYALGYKGVICFHPKSRKFIISQHVIHDEDLFPYKSQHTLQNTSQGISSQDSTYVSSPIHS
AIFLPQSVSMPNDVSSLEFVEGQGSIDLSGSTTMNTSLQSSGTLSHSSIVPESETTPSSSSTTLMLHVLDPAQLEVILPF
PSSSNSGTTHHIVSSPPRMQTRLQTGAISRKTYANYIASLPELQSLQLDFQDSCSSGFSFVASVRDISEPKSFRSAATNV
NWQIAMQEEFDALKSQGTWVLVPPPTHRSIIGSKWVYKLKKNHDGSISRYKARLVAxGYTQELGLDYFETFSPVVRHTTV
RLIISIAAQNKWELRQLDIKNAFLHGDLEEEVYMKQPQGFVDSTHPDFVCKLVKSLYGLKQAPRAWNAKFIGYLPAIGFT
VSQSDNSLFFKHDGTDVVALLLYVDDIILTGSNATKIQAVIQELGDVFDLKDMGKLSYFLGLQIQYSDNGDIFLNQSKYA
KDLIHKAGMDNCKPASTPCKPHTQLLASEGNLLSDLTMYRSLIGALQYLTFTRPDMSYAVNMACQYMNQPTDVHYGLVKR
IICYVQGTVTCGITYSASLDNSITAFSDLDWAVDPNTIRSITGFVEYMGHNPISWQLKKQSSISRSSTEAEYKALAHCAA
DVVWIRLLLKDLHQFLSMPPLLHCDNLSMLALCSNPVFHTRIKHLDTDFHFVREKVQKKDLQVQYVPTKEQTADVLTKGL
HGPTFFKHCCNLRIGNPT
>Copia-30_DPu#LTR/Copia 25-4104  [Daphnia pulex]
MSAIAFSTRDTSHISKFNGSNFPFWKFQVSLVLKQHDLMDVVLGKEVQPQQADPATAANTTAINSWNKRDNSASCCIVAT
IEETFQRSLINCKSSKEMWDRLAAQYEQAASENKYFLQQRFYNYSFQQGHDVMTHITEIETLANQLSDLGEIQTENQIIT
KVLCTLPPSFRSVVSAWENVEDSKKKLPLLTTRLLKEESLNKMHDNGESAEDKAFFSKRSNQVRPRDAQSSKKIDKRVCY
YCDPSGRIGHTEERCWVKHGRPGRPSQNLLQSADAALSHHHTEWPVDYGFSSYITSFLSSTSRNLKQWFADSGASQHMSD
QRWMFSTFHAVKRGSYPVKGIGSDNCPLQATGKGDIRIKSKVNGEWRNNIIYDVLFVPKLGANLFSVRAATKRGVKVVFD
NDGVSITYNSSVVATGTSNGTNLYLLDFEPVSHINEDTSVVNPISLLSKTNAASINTWHHRLGHLNTATIKKMESLKVAD
GLLISSSPQPSICEGCVYGKHHHQPFPTGGRTRGTRIGDLIHSDLVGPMSIPSPSGSRYMVIFKDDFSGYCSIFFLKKKS
ETAEHFKFFVLRLEKETNSFVNVLRTDNGGEYTGGDFQKWIKSKGIRHETSIPKTPQQNGVSERQNRTIIESARSMITAS
NQSXELWAEASNCAVYLRNRVIGKSLPEMTPYEAWFGRKPNLSHXRMFGCPAYMHIPADERSKFSPKARKCVFVGYCETQ
KGFRLWDSVRRRIFVSRDVIFNEVVPXLXHXFSSDCAAKEXPCNPAVLPXQATAPPEDEETASDVIGVETTEQSTSNPTA
SKEXDAVDSSSPSTDDLGPRKRRPPVRWADESTTGIYAGIAVDPDELVEPETYEEAIISPQSVEWKLAMEEEMNSLIKNE
TWSLVELPLGRAPXRNRWVYKIKRSGQNNVKFKARLVAKGFSQRPGIDYGETYSPVVKHDSLRTILSLAAAQDLELLQLD
VKTAFLNGDIDEELYMDQPTGFKEDSQMVCLLKKGLYGLKQASRAWNEKFNHFLIQYGFTRSNADSCVYFQRDENNITII
AIWVDDGLLCSNHQSKLEDIVNYLSDKFEITSGPVDHFVGLEISRDRCKGLIHISQQAYVKKILARFKMGECKPRSVPAD
PCSHLEKELFTSETQDYPYREAIGSLMFAAICTRPDISYAVGQVAKYSSKPSHVHWEAVKRIFAYLKGTISLGISYFRGV
KDGVLQAFSDSDFAGDADDRRSTTGNIFILNGGAVSWRSQKQKCVALSTAESEYIAASMATKEVVWLRRLLMEIGCQQIK
STPLFCDNQSAIRLVYNPEFHQRTKHIDVKFHHIRDMQVQQEISIQYIPTENQLADALTKNLDHQKLSRFKHSIGMCPFV
>Copia-30_CQ#LTR/Copia 3-3786 via tfasty with Copia-117_AA, 1 frameshift. [Culex quinquefasciatus]
MAQYTTGNSRQVKESLFDLNIRHLETDTMADEKQKILLIPTFHGAVKSDYPCWKVRVLHYLKREGLSHCLEKIPAKESYA
EVAQYEMRLKDDNEVVTIIWHSIDNTAMKHVLGLVFAKQIMDKLDHVYERQGQLTLFDYRRQLYRLNLTSFGTLTEQVTD
DEKRSTLMAAIPDQFENTMDALAVMRKDDIRKMSLDEFKGIFLDAEMKKKLTDDEVVSSLALAARRKKEERTCYRCGMAG
YTAWKCGQEPEREEFPAGRRHPSPQRYGRVSPQRSGRANASGERIVRFVDASPEREHGREFHQDRSNFALIVQTGPARQI
AHGSTRPNALGQPEEQSARGEDRGVQERRAGEKPAWQTAHGAPARQIAHGTTQPIALGQPEERQNRGEDQRVQIVRREEE
NPAWQTAYGEAAWQIAHGLTRPNALSQPERQAARGEDYGVQEWRGIGKPVWHTAHGEFEKRSTYLQTRLKARGQPARLVA
RGEDHRVQEWRGVDESAWQIAHGLKEPNTLGQPEERQARGEDHEVQIVRRRGNQPERQIAHGREGRRIAHVPTHLTAFGQ
PAMCKNRGEDRRVQNLKREVEDPERHIAQGKSEWRITHLHTQPKALGQPLERKTHGEDRKVQNFRREVINSERQIAHGEA
ARQMAHVSTHSAVFGQPEEYRTRGADRRKQILRREVVGKSEWLIAHGNSAQRIGHVQARPIALDRLSERNAKGEDRSVQQ
EWRRAEQPARQAAFGADKKQQSGSGAGEQKRARAVKMIMSSSTTDRKVLKECWPEEPRTNTTAKDSEMIIGKKRGVLKSN
AILREQVKTLFVLILFLNLLSVSKIFSTRKRVRFDYECKFIVDKKEDDEEYDIECNDQALLSKSGNLAEIWHKRFHRRDT
GYNSMVDGCNFEISQIEGKLVVSKSCELRKQARHLFIIEEPVGVLPSLICQQAQQVEYNGLRHLAVVYLMRYSNLILEKF
KELEALVYTNFLVQNSKLRLGIIEELDCLKENSICSFKVKDRESVLMIRAKFLKMCAEASVKLPIDESGERMIGLKLTGR
SWKERSNEVVRKMDFDRLHGNTSVHVSEDQSLCIALQSYVRGALCRFGIQLNLNCMKIDVPPKKKPYQTVCYFSRFQNCA
TERHWSGLQQVLRYLRGTTKLFVLNDALDDKVIDNMFSWSSKRQKPSISSTEAKSASSCNAAKEGSWMSSQLEYYTFYKD
RIAEELGEHQQSKNIDIDFDLRDMIQAEKLRVEYVLNIEQPADILTKLLGRQQFEKILEFL
>Copia-11_EPa#LTR/Copia 25-3527 via tfasty with ATCopia45, 76.4% SW:4062, 3 frameshifts and 2 stopcodons. [Eutrema parvulum]
MLLIQNPRRGPSSVKCPMLTTSNYTVWAMRMKIALKVNKVWETIDSGDKTEDKNDMAIALLFQSIPxTLILQVGELDTAK
AVWDAIKARHVGAERVKEARLHTLMAEFDRLKMKETDTIDAFVGRLSEILSKSASLGETIEEIKLIKKFLKSLPRRRYIH
IIASLEQVLDLNTKSFEDIGASNHMCGNSEFFLDIDESITGKVKFGDDSRIDIEGKGSIRFVFKNNEKKILHNVYYIPEL
KSNIISLSQATEAGCEVRMKENLMMLYDRLGQILVTTTRSKNRLYKVTLEVDNIRCLQLTTTSESAKWHACRGHVNLETM
RLMINKELVNGIPKIEIEKETCESCLRGKQTRKPFPKETTFRATHPLQLVHGDLCGLITPPTPAQKRYVFVLIDDYSRYM
WTILMEEKSEAFEKFGKFKMLVEQESKTAIKTFQTDRGGEFTSHEFQVYCDQHGIKRHLTAPYSPQQNGVVERRNRTLLE
MTRSTLKHMDVPNHLWGEAVRHATYLLNRVATRLLMGKTPYEMFKGKKPNIDHLRVFGCVSYARTKAVGRKKLDDRSRTL
VHLGTEPGSKAYRLFDPTTKKIVVSRDVVFDEEKKRSWNKVERKTRHDDGEFDIELGEFGDSERTIENSPETEDRHWAEC
ERLFLTMNDEPLDFxEAKALTVWVEACEDEISSIAKNKTWNLVDLPMGVKPIGLKWVFKIKRKADGSINKYKARLVAKGY
VQRYGIDYDEVFAPVALIETIRLIIALVASSSWEIHHLDVKTAFLHGELKEDVYVSQPEGFVMKGHEDKVYKLNKTLYGL
KQAPRTWNDKLKKILKDLKFHRCSKEPSLYAKRVAKDLIVVAVYVDDLLVTSSSLKLIFEFKREMATKFEMSDLGKLTYY
LGIEVQQFEGGIILKQERYAHKILGEKCMDGCNSTHIPMDMNLKLSKAQKEKNIDEKEYRRCIGCLRYLLHTRPDLSYSV
GVLSRYMHEPKESHGAALKQVLRYLRGTTLFGLLFRCENKVNLVGYSDSSHNVDVDDGKSTTDNIFYLDNCPITWCSQKQ
ETVALSSCEAEFMAATATAKQAIWLQELLGEIIGKTCEKVTIRVDNKSAIALTKNPVFHGRSTHIHTRYHFIRECVDNEQ
IEVEYVSGSVQKAVILTKALGRIRFKEMRDLIGVQDVGKDNLKLKGEE
>Copia-11_DPu#LTR/Copia 305-4267 via tfasty with TNT1, 2 frameshifts and 1 stopcodon. [Daphnia pulex]
MLVNGDEIVEWKMRDCYARFLIFNSCDEVRKLALLNSRTSHEMWTRLETQYLQRAADNKHLLHRDFLNLRPTSGQDIMIH
ITALESMATELNDLGVHITEHDLITTIMCSLPARFGFLSSSWDNVPNNERTMDALRARIVSEQRRIEVRRLEEEAKAVLQ
LQPSTTMLSKHRSSQRGFGRYRGGRTRGSGTPRDTINRDNAKCTYCGKSRQYEFESRLRIATQGEKQPNQPKRPNNDEDG
TGSQRRVDFSMISICCLSAIEHDTIVLDSGATRHMSGERSFFVELSDITPGSWPINGIGGKILHANGIGNIKLTTCVNDV
TTNGELKNVLYVPGLGVTLISIACLSISGYSVSFSGLNATVGRDSSIIMTASRSGETLYKVNAVVVTHSESAMAASTCQT
TVNVWHKRLGHVNGRTIQRMAAGTGVLGMLITPGATTLNECCHGCELGKMHKLPFTKSDTVYHNVGDCIVSDLVGPMQVD
SVGGARFYVLFKDVYSKYKTVYFLKHKSETADCFLDYVKTVFTATGRRVHRLRCDGGTEYINNYLKNELATLGIQLQTSA
TYTPEQNGIAERDHRSTVESARSQMHAKEIPLKLWAEAINYSVYVLNRTISQSETVTPYQRWFGKAPDISNLRVFGSVAF
SSLxNTPDVLRQKLDPKATKGAYVGESEEQKASRIFVEATGRTHISRHVKVYENLPYWSVTPLGNEIQTTTPDAPVSTPS
TSEDAVSPVSNDTPVITQQLDRPAAVPVRKSLRGLVPKKLFAIEMGGACAVHQSPDVSMAAFISMAFKAISLFYEPKTFT
EAMSGTEGDLWHKAADHEMEAHIKNHTWTLVPLPAGRTCIPSGWDFKLKTDKLGLPCRRKARFFAKGYRQVKGVDYQESF
ASVVRYDSLRVIIAIAAARDLELIQLDVTTAFLNGLIDEVGFIAQPEGYIVPGRESEVCRLNKGIYGICQASRIWNKTLH
EALINYGLVQSTADPCVYYRITLTSFLIIAVWVDDGLVAGSSQLLLDTLVSYLNQKFEITAVPADLFVGIVLTRNRAKRQ
ISLSIPQFIDKILTKFQLSTAPAISLPVLKGSPRLSTMASPSSPADVLSMAGLPFREVVGCLMYAALTVRFDIAFMAGQL
AQHCQNPGLEHWKAAVRVLRYLKGTRIHGICFGGKDSNHHVLVGYSDADYAGDPDTRRSTSGYVFILNGGAVTWSSRRQQ
IVSLSTMQSEYIAASEATREAVWLRRLLDNLGTTQILPTLLRCDNESAIGLAYNPLAHKGAKHIEVRYHYIREQVADETI
VVAYVETKKQFADMLTKAVDGETFQFCIKGCGLDAVPEIGI
>Copia-12_TMe#LTR/Copia 100-4410  [Tuber melanosporum]
MSAVTSGTIATQANSSMPTTSLTQSIEKLEGSMATGQSNYNAWHFRIVRILKEKDLLAAIEGEGISGKKDDQAFTILTLN
IKDTQIPHIQSATTAKEAWMALQEVHQGIGSSGRMVLLQRLWALKLAEGADMAEHLNQFRSLVNQLRNLSVDGKGIDDSE
LVTILTLSLPQSYEPLVMAVQSRTEVVTFDFMTGRLLQESARRHVGQVKQEGSDNMTVSQTAFAANRPGSERHLRQSQGG
FPGNGRGRGGFHAPGRGIPSSLTFGRVGHVPANEGGAAQSGQGQQKGKCFYCGKDGHWKRDCYKRKSEQNSNREGGCTFL
ATTLTKTTRMGWVIDSGASQHLCGERDQYVSYEELKGERSITIADGKIIEACGIGNVEIPTKNGMMTLTKVWHVPNLYGC
LMSVSRIVDAGYAVDFAKDACFVTKGHRRTQLGFRSGSLYLLTEEVRSPDNIPVVVAKLGLSGNQARSTTREVWYRRMCH
RTLDDNSFRFISEPVKDMKVEEKNVDHRESQICGTCALGRQHKEAATSTRDKPQEILTIVHSDICGPMQTNSLNGERYMI
TFTDETSGRVSVTLLHSKDGALAAFEKYRRRAEKESGQEIKVLRTDGGGEYVNIRFKKYLEDAGIQHIVSPPYSPRQNGL
AERMNRTLIENARCMLEDSKIGKRFWGPAVLTAAHVHNHLPSRSHGNLSPMEHWTGMKPSVGHLRVFGSTTWVHVPKERR
RKLDAKSVKCILIGYEENSGSKVYRMWDQEKKSIVLSRDVIIDESRPLQNGIHAEEAVAELKLVTPMTEESPDPDTNRDF
IQMERITPVRNIEPVDGDIGSSIVVGTPQANASIRLQQRGNISVARDRIENPAERLGLRRSGRNRKQTQFYGEEARYAFL
SYTGEKEPQSLAEALNSEDKEKWEEAWQSELQALSRNETWVVEPLPQGRQAIGCRWVFRKKDDGRFKARLVAKGYSQEAG
IDFQETFAPVAKFTTIRLLLAMSCENNWEIQGMDVKSAFLNSELEEQVYMEIPEGVLVQREKICDYERPIACRLVKAIYG
LKQSPRAWYGRIHSFFSKNGFVRSEHDHSLFIHYERNIVLVLYVDDIVFTAPAKELTDWIKIKLQAEFEMTDLGELRTFL
GLEVHRNRELGTLRLSQSRYIQRILEAHGMDTCNPVTSPADPHVRLQKSDEFFEAKTEDRRRYQSAVGSLMYAMLGTRPD
IAYAVSKVSQYSSNPGSTHWTAVKRIFRYLAGTVECGLVYHAEGITMGFTDADWGSSEDRKSIGGYAFLLYGAAISWNSK
KRATVALSSTEAEYMALTQAVKESVWLQGILGDLRAGNQTEGLRKINVDNQGALALAKNPEFHARTKHIDIQYHFIRQLV
EEGRIELRHCPTSEMTADIFTKALPVPTFDRHSLGLGLIRSVDTVGERARNEAWRNWARCEQVAVKGKRGGSTGEGR
>Copia-13_PGr#LTR/Copia 327-4877 61.1% sim to Copia-22_MLP, SW:1566, [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MVNTRSTGLPPIVPDFTARVTPPRRHSPSPSSSDFFSPTSAMSSNNPPVSPSDNRPNDPSIPPTTTYPSIYPPLPSFAFP
SGFAAGPSASTSAIPPVDPPRQSATPSSASDHKSTADDDRRGADDERGGAHDTALSFDALLEQAFRKNGLAGFNDDLLKL
LLLRNMMGEKNDSGSSQSAVASLLKWQQLGKDVQPPLSIDGSNFHLWSSSMKDIVASVTKNTDYFKTDLSANDPGTSSGV
VALIKNSIDPALRSSLNGMTAYGAWNSLKGRFAKPSWSLLLSRWSDVARAPDASDSVSSSYESLKRSWLDLEERLGGLTA
DKLLSLSFHSSLGNFKQPLTDAINSRLAIKPDVSITSEEILSMACQLQQSAAANSSLMGMTAHRGSYPSRGNRGRGFASG
RGGRGGGHRQSGKSDPPADSWGQKYLTAEFPCNVCWEWGHWAQDCPRVKRGLPPLDDPRKSNPGWQPKKSNVMSGRLIVS
DGTLASVSANPEKADDVLCDTGATNHVTSQRQFFINLRPANIRLRVASEECISVDGIGDAYIPTAYGDLHLTNVLLCNQV
RGTVLSIGFFDKWDGRVSFKNGLFVFSQCGRLFPSYVENCRWFISSVPTSKQLSASVSASPGIQTPSVSSMTSQLWHARL
GHLALRTVNKSILNNSVFGLPDKPFAQFSGKCGSCSLAKSTHKPVKSPSREVADKPGAIVAVDLVGPFPAALDGSTYGLV
IHDLFSRMTSTFGLKSKDLAAKEVMTWIENFKKHCSHDVLCIRSDCGGEFISIKFNDFLKKKNIRHEMSVPYEHHQNGSV
ERTNRTLLDMARTLLIHAKLPNTLWFLALKQATFIFNRIVHEGAKKTPYELCLGKTPSLDMVKVFGCRAYLHNIKYPKQF
VPRSTPLIHVGISDTSHGWTLWNPVSKKLEIGASVIFHEDELPSQLTNSGTLNAVLNSIQAFHLGDFSQIKELEIQDACV
SSAVALSPFLSDAPNTYGQALKSEFHCEWLKACEEEIAMMIQLHVWEEVPFSEGIEVLNCRWVFALKRSQEGIITRFKAR
IVAQGFRQVHGVNVGETFAPTPTFPSLRLLLAMASRFGWPVASFDVKSAFLHSDIDHDVYIRPPPGVNVSPGCVLKLRKA
LYGTKQAARCWWLHLKAKLATIGFHPNLEDRSTYVYKSGEDMAIMWLHVDDGLFTASSQELMSRLKSQLDSVLDLKWDVQ
LSSIVGIRVKEISGGFALDQPMLIEKIINYSPSNIKTRTPLPSTDLVSNPSKGMDREYLSRIGCLLYLAQGSRPDITFSV
NFLARFSMAPDQSHWDALEHLISYVRFTSGLALPIVSSGDPSDCVRTFVDANWGGEGWRSVHGFISTVWGAPISWASKRQ
SCVARSTCQAEYMALSFAAKDSCFLSSLLSSFFSISSPLIFSDNKAAVYISKDCGSRKEHRHVDREFHIINELLYQEKVR
LEWIPTDQQLADIFTKALGWRKVSEFLTQTGLRSLSHTLASIGGKVCAGCDEHTPPAIVRLSPESKNSSIGDWFNGG
>Copia-13_DPu#LTR/Copia 60-4300 via tfasty with Copia16-NVi, 2 frameshifts and 2 stopcodons. [Daphnia pulex]
MSMSTSKDISHIVKFDGSNFQQWKFGCRLLLESFNLLDIVDGVEKIPAAVSYFLSTSKLFHLLMHFLIDSNQKLIDAWKS
KDVHARHYLFATIERQQQNTLYRCQSANDMWVRLTTQHAQNAAENKHLLMQQFFEYKYHPGSHYPYAxQYTPLNLFLCSH
SVMSHISAIELLASQLKDLNEPVTEAQVMTKILVTLPPSFRHFLSVWDNVPAKNRNIQTLTQRLLKEENVTKIYNNGQSD
AADSAFFSNNFPPQQSDRHSRGGFNNRRSRGGRPGRGAGTRHPHIRKCNYCGDTTHLYATCRERLRNERDKKGSPGEKSN
LAKDSNKNHGDHSYHSSTQQTIRNDSTWYADSGATRHMTDQRNILWNFKPDDSTPRYVTGIGNTQLLTEGQGDVKATTMI
NGAEVPITIKNVLFVPKLGTNLFSIGASTNEGVEAVFTNNEAKFYRNGNLELTGKRTDNTLYQLNITAKVAYEDSALAAN
LVLPLSTWHERLAHVSNSSILKMANQNLVAGLNLSSHHSDSKVPCVGCTLGKMHRSPFPQGRTRGTDIGSLVHSDICGPI
TPPTPAGSRYFVTFKDDYSNWTTVHFLKTKDEVPDLFRAYTMFLKNSTGKVVKTLRSDNGGEYTSKNFSTWLQNSGIRHE
TTAPHTPAQNGVAERANRTILEAARSLIYTRNIPLKLWAEAIAYAVYTLNRVVSKAASVTPFEMWFHKKPDVSYFRIFGA
RTFVHTPDATRKKLDPKSQEGIFVGYCDASKAFRIWVHEKQRVVISRDVLIDENNVFKGPSNEEKHILIFPESDFIEERT
DGNPTPDEESSGSTSGPEFEQLRKDPTNAEREQNPEGEQRPEGEQRPEGEQRPEGEQHPEGEQHPEGEQRPEGExNLDEM
EENSTLVQPRRSSRQPVYSEKFKNWRRDLGLLSCANQPHEPLNYTEAITSDEANLWKPANDDEYASLMKNETWARLVAKG
YTQSQGIDYQDTYAPVVKQCSLRTVLSLVAALDLEFTQLDIKTAFLYGELEEELYLEQPEGFVIAGRENEVCRLKKSLYG
LKQSPRAWNTKFNEFLVKFGLTRCDSDSCVYYRRQEEGEITIVCIFVDDGLICTNKKSVSTSILNFLNMLFEIRSLPADR
FIGLDILRDRPNKKLFISQIDFVNKILKKFNLDLCHPKSIPADPNARLTAAMSPSTQPDPISPHLTRYREAIRCLMYIMT
TTRPDIAFAVGQASQFCQNPGDGHWNGVKRIFAYLAGSAHLGLCFDGQQKNNLTGFTDSDFAGNLDNRRSTSGFVFLYNG
ASVSWSSKLQQCVSLSTTEAEFVAASETSKEAFWLQQFLREVKGDEIGPIPILCDNQGAIRLIKNPEFHQRTKHIAVKYH
FVRHQQHNGNIEVSYVPTENQLADMLTKPLPGPRFTFLRDQIGVKPLPQTPTV
>Copia-11_CQ#LTR/Copia 70-4692 [Culex quinquefasciatus]
MSTERGTLGQLPYTALQVRETIFDGREGTFGTWKHRLLRRLAKLRLDHCLIRTPLEEACAVDLLDTKVDEAKKEVYRKRL
NDDTDALDEIVMAVNNDVLNYIIGATCAKEAMGILIHEFQKEGTGCLISMRGRLQTLRERKFDSLSELFYHYDVIVRELD
RLGAKMSNAEKIHSLLLAIPGRFNHVRGALTVLPNEELCKKPIAEIKRMFLDAEMAMGEERKNGREERSGPPNVALKTSS
KKAEPKCFGCGEIGHYKNRCPRRPRKQRNGHGGGRAAGGHAMIARAGRTIRQAKLVKLARAVITRHRENAMPIRGREREQ
PRENAEPARGREREQPSDRAVPTRDREREQPCDHAVPTRGREREQPCNHAVPIHRCAAVKIPPTTPQKDLRERVRVLTAK
KLPRERELPHKAASPRERHRERTTTHGSSVTTVKSREQALAMGEVAREQPRENRRAALKRAIWMGERPVQRKVRFVIDSG
ATNHMVREENLLEKVEEMKQPLIISTAKSGESLRAIKKGKVTLRSVVGNVIKMVNLYNVLFIPGLETNLLSVRKATTAGK
RVTFQGGEVIFDDKGEVIAKGKLVDGLYSVEFLREFSDSALLGKKELDIHRWHKRLGHLSYGAIWTLLNKKMADGFNCAA
SSSDRDAICEGCLAGKQTSRKFRKMELPRSSRPLELVHSDVCGYMEKSTQEGFRYFVTFIDDYSHYTVIYLLKNKSEVFQ
KFKEYEALATANFGQKLSKLRCDNGREYVGKEFQEFCKEKGIQMVLTVPYTPQQNGVSERINRTLMEKVRAMLFDSKLPK
SLWGEALYCATYLTNRSPTRALLDNKTPFEIWNRKKPNLSNLRIFGCPAYAQIPKEKRRKLDPKTKRLIFVGYANNGYRL
WNNFTRCVEIHRNVVFDEESMLDVEELIYTNFKQSKPEHNSQDRSDYIKGEIPQSSEESADETTPKADPSLTDDDDDDED
GNDVSEYDDADDNLDDIETAPEEHFNEEAQVESLESMDDKITKEGEVGVQPTLRRSKRTKKTTRNLTVLATSNFEEIPQT
ISELKLRDDWDSWKEAVNDELGSMKANNTWVAVNSVPEGRKSINSKWVFTVKDDGRYKARLVAKGCSQRPGFDYIETFAP
VVRMESVRTILALANEFGWLIHQMDVKTAFLNGDLNETIFMKLPNDELCRSQVVRLQKSLYGLKQAGRAWNKKFDDEVKK
LGFVQLKSDCCVYRSSTKQLGMVLYVDDILIIGEKESNINWIKNQLGRLFQMKDMKEIKHFLGMDISRNFQKQTLEISQV
GYTEKILKRFGMSECNPVGTPLDPNVQWRETADDELTTHPFKELLGCLQYLAITSRPDICAAVSALSKYQAAPSDLHWAG
LKRILRYLQGTIETKIVYEKKRDHHIMLGYADADFANDKDNRKSVSGYALVVFGNLVAWSTKRQPTVSLSSTEAELISLC
TAAKEGLWLTNLLNELSVANTSFTIMEDNIPCIRIAEEPRSHQRTKHLDLKYLFIRELIAEGKLQLRHISTNDQPADAFT
KGLPKLQHRKLTNLLNVRIEG
>Copia-9_PR#LTR/Copia 29-4441 67.1% sim to Copia3_XT, SW:1422, [Phytophthora ramorum]
MGKGHTRSGQILGLEKFNGEDFTVWKDKVLTHIETLDEVYQRALLEKDQPRATVVMMDFLESTPEKPVITVEGEVTQQEA
KNLRWRYQHWTRAHAELKNLFNQALPNVFLSVLEDQVSRMQPCDIWKELEQKFGLGDAGGVIELLRQWERLTTANWSNLG
ALFGQLKKLRNDVNRKMRGLVGKDMITEPWLCMQVLALLPSEFWGSSVSMTAEWFTIENVEMSLRRVFGDRSKKEINMLT
DKRRPLSINVAKRFTGKKRSQDEALGQQAKDCFYCFETGHWKKDCPAMAADRDPNRHGGTLFRSNIRTAPGAKKKRLLTV
KKGPKSTTKSTAVAQREERTPAEDLAFDRQLEKAIKDADEFEFKDPIPLSEGSENEAPMNSMDIDSEVRKRYPGYLYRLK
QLKVTDNLWVVDTGAGHAISSERRWFSHLGKGRTHTFEYGNRGTSSSELQGTVRFSVLKPGSYYSTISIQNVAFDTNCSS
NLLSAYYLATQGYHHIQAKNGEYLYFLDSKNRFIFAAVAIDEVYYLPSRPQKVNTKVLSVGTNTRLNIQNTLKEWHLRLG
HVGKGRLVNILAGNAIKDAPQLSRREMENVPFFCRTCELAKSRRMSYRNMVGEKAPAPLHTLHMDSVGKIRPQGLYTTSG
HKYALAVVDDATAYKWYFVIKSLKEVGTIVKVLIKQLEKQLPYTVKRIRTDGGTEFVNTVLKNYCNRNGLVYQQSNVESQ
EENGSAERAHQTIMGKARCALIGSGMAAKWWPEALKYMTIVNNRIPTARLRGKCPYEALFGTQPTGMRLRIWGSTCYAHV
PKTKRANQKLSERSIECKLLGLSESYKGYRLLDVKGNRYLNARDVTFGATYTEGLISRSFPSGQIESNKECFLEICELGK
RESEINTNVPKKRQRTDNEEVEAGGGTETVGAVNQRVSVPPIPRSRRKRQPSSRLRDYIVSINAVTISTKVIPIPRSIKE
ARRGPHAEQWETALQTEYQALVANDTWEVVHLPKGRKILGCHWVFDVKYNPDGTVERFKARLVVRGNTQIHGVDFDEIFS
PVARYESLRLLLAIATIKDFHVHQMDVSTAFLNGSLFEEIYMQQPHGFRHGDASRVCKLKKSLYGLKQAPRIWYALLNKF
LVSIGFCRCKKEYCLYRQKWEVNGVTHVVLICVYVDDITIAASDMKLMQKVKAKLASRFTMKDLGDIHYLLKMEIKRNRA
NRILSMSQHKYIMDLLQKFEMSESSTEPTPQTKSVVLEKEEELNPEQIAAQPFDYRGLVGSLMYLVRGTRPDIANAVREL
SKFLSCYNKSHYKAAQRVLKYLKGTSMYGLVFDGKSKEVIYELYTDASFANANENRKSVTGYVSIMADACITWKSSRQST
VSLHTAQSELIAASEGVKESEWLWILLEELGFKQTQPIVCWCDNKGAISIIKDPANHTSTKHIDIKGLYAREVHDEGRIV
VSYYNTNDMIADALTKALPQTQFENSGILWA
>Copia-8_LBS#LTR/Copia 88-4419 via tfasty with Copia-126_AA, 59.4% SW:1127, 2 stopcodons. [Laccaria bicolor]
MSGSHNISIPFSLPEDQRCRGYENFASWKTLMIAHGKPRGYLKYWENKIVVPQEILDAENTSTDPKTSPSGSTTDKPPGP
TPAHSITPSELEYELCESASMSSILINLVDIAGSGVDSNGKLHEAWTLLAKQYGGASDRARNMQERALANCKFEEGMKVA
GENGHIEKMRALRKAANDASAEITNIRFITKLLDSFPKSWDPIISNLYDKEDLSEVIMKLTSHGERLANRASETTKTTNN
TFDSVKALEATVHALQAEVKTLRTRPGGSSNPNKSHLVCTNPSCGKTGHLIPDCFQMGGGKQGQYPPWWKGKRTISPIAN
LASSSSTIDGTINTGGHFALSATFNDDVAKLLEENESVLQKVALAASQVLPSISSCSFADSGYTTHFFKSRDVFSMYKPL
ERMAGQSSKEGASFSILGGGDIEIKVVFNNVEHTLTFRDALHAPDITANLLSISKMDIAGWHAVFGDQRVRFYKGKSEIF
DGILKNGLYLVNGSFSLAIPTALTAQSLRSPTDLATWHRRFAHFGVTRVKQALKLVDGLEVTSEDAIGQCEDCILGNQKR
RPYDDDVQIKNRILRLTNIDIWGPSRVKSHGGSLYGMKFHDSGSAHRKTFFLANRQDETTLTALKTYRSESEKVTEKLMV
FIRVDNAPEFKGKLWAEYFRETGLIMLPTPPYSSSSNGTAERSIGVTTGAVRIMLLDAGLSAKWWAEAWAFADYVENRLP
SSRHPGVIPEEGWTGKRQDVGHIRVWGCIAYVHIPFEKGGSKLAARGQKGRLIGIEGxGVYRILIPETGQIIRSRNVKFE
EGLGHRTLTTEREYFHQDNGDTDYDFLVEPIVTEKPITVPAVPGNPIIPDTLNHPQTRPRIVYPPASRQSARIAAKNNPP
PAETDDDASIPILEDPDEDDDSTHTALNAEFPPEPQNRFVPVTFDDAFNLSRRHLWFPAMEREIAQWDERGVVTAVPHPP
GVKTIKGKWVYDLKVDGLGSLIRRRARGVVKGFSQRLGENYYESFAAVARYESVRMLFALIASLKLHFWLIDFVGAYLNS
KPQGTNYLEIPQGFENHYKIPNIDTVLIMNFTIYGTMDGANNWFRLLNKTFTELGHRQSRADPCIRIQHTTEGYTISSTY
TDDVSAGSSSVDAMDRAKxELAAKFEITDLGTPNKVLGMSIVNHASGDISIHQKPLITKALVTFGMENANPKYTPLPPGV
TLVESQPMPIPPHDSEFMRDKDYRSALGMLNHVANGTQPDIAFSVMVLMRYASDPRPMHWKLVQHLLAYLKTTSNLVITY
RKDGVIKPFGYSDSSYADESDSRKSSAGFVFISSGGPVSWKAKTQRCVSTSTGEAEYVGIFEAGKQAKWISAWFFEVDQF
FDLPITVYCDNDAAVALTKNFGGHTKIKHVDVKTHWIREAVNLEDIIVVPIDTTQNVADIFTKSLSRPTLEYLIKLMGME
YIDI
>Copia-9_SI#LTR/Copia 112-4379 via tfasty with Copia-14_SI, 63.0% SW:1715, 1 frameshift. [Solenopsis invicta]
MENWNLTSVEPLDDKNYFLWSEKIEGILRAKKLWKKVINVKPPEKPVEGTENYETKYKSWNEWDDDNYAARAVIINTMSS
SQLLKYSREKSADKLWSLIKNNMAAETDQLKAKFLSELSNLRMYKDESVDAYVNRAEALRNQCVQLGKNIEDYELRMYIL
SGLRSEFDQNVRVLDTQRELTINDIRYALKQEESRKNKRKEERTSRDEYVRRARDKPKFDVACYNCGMKGHVSSECRNKQ
KCFNCQGLNHISADCKEPKRIASRGRGTRGNSRGRGFGRRRGQSEVTLKTADESVLTVRDSAHVSMSLCKNGESKVTKDN
SNDCIWILDSGATSHMASNEVMFGYLEDEKRDIRLADKEGKKLISDGKGEIVLKQDSVNSRIRLENVLCVPDINVNLLSV
AKITDHGYNVKFDKHGAIVYRDKDEIKMRAVREDNAYYVKTTTMNDEKAATITDIDIWHKRLGHINKRIIEEMKREDLVI
GMKETSKEIRQCEPCVEGKICRKAHPRLPGRRTKKIMELWHTDLIGPIKPSSRGGKRYIMTTIDDYSRVIFIDFLREKGE
AAKRLKELIMLKENQTELKLKAIRSDNGGEFIAEELENWFKSKGIKHEFSPARTPQCNGVVERANKSIIEMTRTMMMDSK
LSMDFWAEAASTAVYIKNRSKSTVHGKTPYEMWNGWKPNINFMRRFGCMAYVLDKEKQRRKFDSKSVKGIFIGYASNNTY
RVYVPETGKVKADCDVKFDETRNGCELINRKADKEEKNEEKLIIMGINPGNNEEWMENRMEIEEDEEDRRTESSVYEDAT
QEDLGDDTHENLENGDESEDEEQIDDGRNVRNGVIEEIQEQPIEIRSRGRPKGTTKAVMELRRVERLEEQERNIGQNDVR
RSERIKNQQSALLVTDDEIPKNVEKAMESSDWKFWKDAIKEELTSLDKHKVWDVVPRPKDKKVIKCKWIFNIKEDPNTEQ
RRYKARLVALGCGQRPGVDYRETFAPVVRTETLRILFSISAQERRKIKIYDVRTAFLHGTLKEEIFMEMPDGLRSNKEQV
CKLKKSIYGLKQAGRCWYECLTDVMQNCGMKQSVEDPCLFYVKKENNYLYCGIHVDDMVIISNREEFEKEYMDKIKRYID
IKDLGEANTVLGMQIEQEEGRIYVHQRKYIQNLLQLYGMEECNTVGSPMDVNVIMEECSNSEQADVHIYQELMGRLMYLG
VYTRPDISFTLSNLSQFNNDPRMMHMTALKRILRYLRGTIDYRLEFGEKAVEGLIECEADASWDRTKDAKSYSGILVYRN
GDLIHWKSKKQSKVALSSTESELEAMLEGTKEVVWTARLLREIGMSNGSQTELRCDNLNAVRLANGGTFKTKSKLLNRRC
HYIKEIVKEENVRVKHVPNEVMTADCLTKPLSKPKLLKACEEVHERTRMIKPRGRLWDIVFYH
>Copia-10_PR#LTR/Copia 44-5221 57.3% sim to Copia-104_AA, SW:1191, [Phytophthora ramorum]
MSGRQPPPPGTSPPPTPAAGGAPRAQQVTTTGTTIRVPSATTPVMATLAGQDGSTGGLIAGAGGHVAGVGDYVADDGLPR
GGLPFTGFVPGNGMQPAGGVSLSRGEVVPSSGLGVATGARPIGMRTPGGAATHGAGVLPVEAGVAQTGAGVPRVGLTSVK
LDISHKPPVMKGSFDLYSVQLRAFLTRLGCWCVVDGSYRSDQQNFTDLAARDNAAREAILYGVPAADAEMICQEESAEAM
WSRFVDRQTKREYSNYIFTRDEFVSNRYTPDKTMDQWLREMETLRRQLFHYGKQITDEDYAETLLGHVSRTHRDVVRQFS
KHYVVRDGGAVRPVPTATQVMNALRAESALDERVACEADAKPVHVCSCGKQAKDDSATTKPNGNSSRGKQNRRKGRYKAN
QRNEERKQNCKKKETRTCHECGEVGHLRANCPSRKSDESDRPAISEFKRWENKSGGNNTKRTSKNSSGLCCRVRGASVIA
ATSVKTSAGTEMEWVLDSASDVHVCNNRSVLYNIRKDQLHFFLGYDGNTREDEDVGDVTLRVTSNKSPYNELMLPFTNVL
LSPEAPDNLLSQDMLENDGWTVKYGFINSQRVCWLRKEHVELLLTKTNRRYRLKAMAAAVYKVQSEVRQQTNESDSRVIL
KRKKDSDSLLERWHLRLGHLNPPALRRMVRDEVATGMKVDLSEDMRSPCWSCRAAKMIRMSYKKTLTRRATRPFQKLMSD
MCYVKEVTYDDYEHFQLIQDEASRYLWGFMLYRKENSSDVVLAHLKWVIAQGNKVEVFNSDQGKELFNNKLKTFLQGNGI
EYTTTNSYSPEENGLVERMNGVVLSRVRCLLTAANMPWLLWGEAFGFAIEVMNISGNNALEGDTPYFRRFGERPDMTSLR
TWGCIAFIFTPKVLRKSKLENPGKPGLFVGYAKHSESYRILNLITGNIVEVRSVEFEEDWTVEASYVIKLLSNRYGRGRH
ALPQIIPYVRLPVMHRETVDVTRRSHDDCTGPSKRQRCEVHVSCGCPADERNESAVLTTSGAPGRWLITGQEVPTETAAA
VALPTSEGVLQRGANAFHREVSEHESGVDSVVDLLNSSQEATARSLPDRQTSPSVGDHDSGYFAGNDVDTGNGDQYEGDV
SIGNPADLLDRITSYEGFVDMNSEDDDEADGWRDEALRAATSFRRSSRVRRPNVRLQDYEVEIPASLVVQAVNLLMEPQS
IQEALQAPDAEKWKEALEKEYSDLMRNNTWDLVERPKGKKVLTNKWIFVRKRNPMGQVIRHRTRITIKGCQQQYGVNFWE
TYAPVVSYEAVKLVLLFALHYGLLCEHIDFVTAFLNGPIGDDVEIYMEMPEYFDDGSGRVCRLLRSLYGLKQAPLIWYKM
LDEHLRSCRFKRSKMDNGVYWRVVGGSPIFLTVYVDDVVIAANAKNIKLVVGELERKFKIKDLGSVSLLLGMEINYILGQ
AMWISQRGYIEKILSRFNMDKCRAVATPQPVGALPLPAASDAEEVNDENLPYRAIVGCLQYLVQCSRPELANAVRTLGKY
LNKYTHVNYSMAKRILRYLRGTSDYGLVWEKKETPDLHFVAYADADLGNEKDDRHSITGYVLQLNGCTYAYKSRKQRIVT
DDTCCAEFVAASECSTMIVWTHNLCKELKLKRHKPTVLYQDNQATITVLTEIKGNYKTKSVDLKYHKVRDFHERGEFEVR
YCPSAENLADIFTKALGPTLFRKFRERLNVVPLPLAIADGNAESRD
>Copia-10_CQ#LTR/Copia 104-4029 via tfasty with Copia-1_BM, 1 frameshift. [Culex quinquefasciatus]
MADEEVRVPGAGRGVAAVQPGGPRLPGSSVSLPVKEVLRGSENYNSWAFATKMVLIKERTWRAVRDPVEGEPEVDADTSE
QALATICLSMDRGLRGMVQNAATAREAWDILRNTFEDSGSTRRIGLLRKLTGIRLMGAEKVEEIICQSTQEYVSEIMVTC
NQLAEVGFKVDDDWVSSLLLKGLPKKYAPMILGLESSGVKLTAEKVKATIMQEVKVEAGSSSSESEGAFYSKQRQQKFKK
PVEKSDVKCFRCKKLGHYASECTNGTSAKSKEKSGNHKGNATSFFAAFNAVESPAGASGDWIIDSGATTHMCRNEAILEK
PSSVSAMINVANNAEVAVVAKGSVKLEAECDGEIRDLTMTDVMCVPDLAINLLSVSKVCQKGFRVEFTKDACAVLDASDT
VVAIGRETDGLYKLTETKRSRANLVQADDQFELWHRRMGHLSASGMKRLREMTTGAQFDVKDGCTCVPCIEGKHQRQPFN
ARGQRAERVLELVHSDLCGPMETESIGGRRYFLTFIDDASRKTVVCFLKSKTEVLEAFQNFKAFAENQTGERIKRIRTDN
GREYVNREMEEFLRKSGIHHEKTVPYNPEQNGLAERRNRTYVERARSMLFDAGLDKRFWAEAVATASHVINRSPAKGLSV
TPEEKFTGKRPDLSHLRVFGTKCMAHVPKERRRKWDKKSTGTDVALTEPEVGDEEMELIVPSIPIEVGPAAEEEAEPEED
ESDFSDYESVEGDADSLVEAEEEPLVLPPQPEDPQVLVRRSGREHVPPGKYKDYVCSTLPEKDSQPRQNRSIPMMVEPDT
YREAIARDDSDQWKRAMAAEFGALVENRTWELTDLPKGRKALRCKWVYKLKTNSDGSVERYKARLVIKGYSQIKGVDYSE
TFSPVVRYATVRYLMSLAAKLDLKVHQMDAVTAFLQGDLGEEEIYMEQPEGFTESGAPTKVCKLRKALYGLKQASRVWNQ
KLDAELKRSAYDTCVYFKLEGNTVLIVAVYVDDLLVFSNNQQWVTKLKKDLMARFRMKDLGMASKVLGMRVTRGDDKVML
DQEQYINELLQRFNVAKCNAVSTPVDPTQKLTKEMCPSSVEEREQMAKVPFRELVGGLQYLALSTRPDICYAVNAVSQFS
SNPGKAHWIAAKRVLRYLKGTKMMKLTYSKHRDQSFVGYSDADWGNDPETRRSITGYVYMEAGGSISWSCRKQTTVALST
MEAEYMAVSAATQEALWWRGLLKELFGVAQPVTIYCDNMSAVHLAEKEIGYSPRSKHIDIRHHFVRENVEEKLIKLEHVA
TEAQKADVFTKPVAVSKFLEARKALGIHG
>Copia-14_BRa#LTR/Copia 35-4072  [Brassica rapa]
MSEKDSLIIPKFDGDYEHWAMLMENLLRSKEWWDLIETGIPRVERNVILTGPQRTELAEKTVTDHKVKNYLFASIDKTIL
KTILKKETSKDLWESMKRKYQGNERVKSAQLQRLRRDFEVLEMKNGETVTEYFGRVMEVANNMRNLGEDIPDSKVVEKIL
RTLEEKFTYIVCAIEESNDIKELTVDGLQSSLMVHEQNLKRHVGEEHVLKVEGQWKPSMGRGRGSSSYRGRGRGGYGGRG
RGSFDKSQVECYKCHKKGHYKSECPEWEKEEANYAEMEEDVLLMAHIDGISDDLKHNWFLDSGCSNHMCGEREWFTEEFD
STFRQSVKLGDDRRMLVQGRGSLRLEINGIVQEVTSVYYVPGLKNNLFSVGQLQEKGLRVLIEDNACEIWHKKQKRMLMH
SKMSKNRMFIIQAKIRKTREVGDDNKCLQVTESKEELWHRRYGHLSHKGLKVLAEKKMVLGLPSNHLHVEEKVCDVCMKG
KQNRQNIPKRSDWKSSERLQLVHSDICGPITPTSESGKRYIINFIDDFSRKCWTYVMSEKSEALKLFKEFKAAAERETGQ
ALVCLRTDRGGEYNSTAFVEYCKESGIKRQLTAAYTPQQNGIAERKNRSIMNMTRCMLLEKAVPRKFWPEAVMYAVHILN
RSPAAAVEAVTPEEKWSQHKPTVEHLRIFGCVAFALVPYEKRIKLDEKSVECVMMGLSKESKAYRLYNPATKRILISRDV
QFDESRGWEWEREAQTEELSWKELVVESEKRRDDETLPEETQADVEAGEPEAEEENIGEENAEESEGEEAHQPPTRGRGE
RNRQAPVWMRDYVAGNASFVITEDEEDLVAMFIAAEDPNCFEEAMQQDVWRQAMEAEITSIEENQTWELVDLPTEAKVIG
VKWVFKTKFNEKGEIDKYKARLVAKGYHQKYGVDFYEVFAPVARWDTIRMMLALAAEKGWKVFQLDVKSAFLQGELSEDV
YVEQPKGFEVREESNKVYKLKKALYGLKQAPRAWYSRIEGYFVKEGFEKCYCEHTLFLKKEEDNILIVSLYVDDLIYTGN
SVTMLERFKKSMMNEFSMTDLGGMKYFLGVEVIQGEQGIFINQQKYAEEILERYGMESCNSVRNPIVPGHKLTRAGAGEN
VDPTTFKQLVGSLRYLTVTRPDLIYSVNLVSRYMEQPNEQHMLAAKRILRYVQGTTELGIQYKRQGEKKLVGFVDSDYAG
DSDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVSAAYGACQAVWLRNVLEEMGSSQGGGTVLFCDNSSTIKLS
KNPVLHGRSKHIHVRFHFLRELVKDGVIGLNYCTTQDQLSDVMTKAVKLDVFEKLRERMGVSSKKE
>Copia-16_PGr#LTR/Copia 52-3963  [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MSDTEENKPKLVATNIPKLDDDNYESWSGRMEVYLKAKKLWSFVGGSEIPSESKRHEAAHLLISHLGDGAYDACVTRDNR
DKPSALWTAITEQYASESANNKGRVWLKFMRSTYNGDLKEYITSCRKFIQQFSTLQLGVPDDLISISILSKLSKDMYNVV
DNILMNESIIHFPNRTLKKLQEFAYVTETRIDSSSKTASKSTVKEEASAFKTESKKYVNPNPCSKGVHNPKAAHPEWKCH
KLTDEQRIAARPASGHVTSAKEVESDYVEVSAYLNFGSEASKPAILDSGASHHMVNDDTFFKKVKEVNIEINTGNHKQRV
VAVASGQIQIIDDAKNLITLDDVLFTPDLNRSLISMNKLFXSSATITKKXNNFIINFDEGFKLSGKINNNLFELDNXFAM
KSTASSYFSSSKDIDWHSRLGHPNSVYLKKLVPNAVDQNCETCKMCKGVKKPFKGKFASTSSVLEAIHLDLVGPFQTRSV
SGCQYFLTIVDQHTGFKAIKLLKHKSETFSKLEEWIIWAENQTDKKVKRIISDNGGEFKNIFFEEFCSIKGISQFFSPPY
TPQNNGMAERSNWAILDKAKCLYAQANLSPRFWAEAIHTSTDLCNLLPSSTREFKIPYEEFFGRKMNLDKLRSFGCLAYV
LTPEVHRKAKILPTSERGIFLGYANDFSSYRVLKIESKTVCICRDISFKESVFPSLSNESIDQSSFFFNPFDVIHGVDED
DEPEEFRPFPEQETPALEEETDINTLQEMISPDTRVASKEIIGDISSENILTHRRRGVPELNLKEVDSDTLSFQEILKHP
NKAKWMTALDGEVDNMKEYEVWDLIDKTKEEHPLNCTWVFRIKPEVSNQPEQYKARLCVQGFKEVFGRDYNQTFAPTGKL
VSLRLLITFAAQRGLKFHQIDVKCAFLNAPIRERITLNPPPGLNIPPNKLLLLKKALYGLKQAPKAWHLTLSSWLLSVGF
NRSYAEPCVFWSANTWLYVHVDDIAIFSSEPEVFKRLISKRFKIKDLGETKHLLGMKVDQSPTEIRLNQTHYIEGTIIKY
GCSDSIPLATPMKPNSQLVKASKNEIEELNNLQYHYRGLVGALNYLSVTTRPDITFAVGCLSQFLKNPGILHWNAAIHTL
RYLKGSKDFGITIRKTPIEDLKFESYVDASWASCQITGKSTTGYLILWNDNLISWRSKKQSTISLSSTEAEYIAITEVTK
ELIWLKMVAETALNFSIPSPSPIYEDNQAAILLANNESNHSAFKTEHMNLRYHFVRSEIISDNLSLIYKKTQGMLADFLT
RSIGRSSIFKVLRVLQAGMPSPSG
>Copia-16_BD#LTR/Copia 26-4367 via tfasty with Retrofit4, 4 frameshifts and 4 stopcodons. [Brachypodium distachyon]
MASAATQSATSGAIVSSTFLSLGVAIPTTPINFANLITIKLTPENYLLWRAQVLPILRSNLLMGYVDGTFPCPTEKIPNP
QAGDGGAYPTIPNPAFQAWYQRDQAILSAILSSLTESVIGMVLLASSSGEAWSTLADSFASQSTARSMQIRHQLSATKKH
NSSATVYFNKIKALSDTLTTIGQPLRPEEFNSYLLAGLDSDYDALIEVVSTRTTVMPTRDVYAQLMSNEQRIESRKAEAA
ADFHTANAANFRGNNSSGGRSYEQQNQGKPIYSNKSGSPGPSYPMQQINSNNRTNNSNRVLGGDHPRMRCQLCDAVGHIA
SRCFKRFQYDFLGIGNDGRYTDRQIAAATQGGQGGQTSAYAVDTSWYADTGATDHLTNELDKLTTKENYHGKDQVHSANG
SGMHISHIGQSIIPIPSKHPLYLKDVLHVPSVTRNLLSVRKLALDNNIFMEFYPYYFCVKDRATREILLKGRCRGGLYPL
GAPSFKQAFRGQVFSGVRVYSHQWHSLLGHPSTQIVQHVLHKHSLPLESVKDKVLVCDACQQGKSHQLLFSRSSHVTSSP
LELVFSDVWGHAQTSVSGHQYYVSFIDSYSRFTWLYLLKQKSDVFNIFLQFQKHVEHLLDKKIISVQSDWGGEYHNLNQF
FNNIGISHRVSCPHTHQQNGTAERKHRHIVETGLTLLAHASVPFHFWSDAFTTACFLINRTPSRVISMQTPLERLLSEVP
DYTFFKVFGCACWPHLRPYNNRKLQFRSKKCVFLGYSSVHKGYKCLHVPSNRVYISRDVIFDENVFPFSNLPSTPTSNQS
TAATPNSDQFDDVAYIPLLFPNHGAGTGRGARFELLDDDEPGSPATSRPHNHVPDSPEVSTPSSESPGAASSPTETASTA
AEISNTESAVTASPPAAPALSRRVTxLHHGITKPYICNDGTVAWTATTSVDLLTTEPRDFREALAHDHWKQAMETEFAAL
xRNNTxHLVPAARPGANIIDSRWVFKIKRRANGSIERYKARLVAKGFKQRYGLDYEDTFSPVVKPATIRLLLSVAVTRNW
HVRQLDIQNTFLYDILEEEVYMRQPPGFEDSARPKYLCRLEKALYGLKQAPRAWHARLSSVLRCLGFTASSADTSLFILH
RHDVVIYLLVYVDDMIVISSSPVASDRLVQQLRDEFAVKDIGPLHYFLGLEVLRSPGRSFLFSQQKYALELLCRASMLKC
QPANTPMVVTEKLSALDGDPLLADDATRYRSIVGGLQYLTMTRPDLSFAVNKVCQFLHEPRDCHWTAVKRILRYVQFTLS
HSLSILSSTNSSLSTFSDVDWAGSVDDHRSTGGYAVFYGCNLIAWSARKQPTVSRSSTESExKALANATAEIVWVQSLLQ
ELKILLPQPPILWCDNIGATYLSSNPVYHARTNHIEVDFHFVRERVSQKKLKIRFISSKDQLADIFTKSLPFLALEHCKR
NLCLLDPG
>Copia-17_SI#LTR/Copia 95-4039 via tfasty with Copia1_XT, 74.4% SW:2856, 4 frameshifts and 3 stopcodons. [Solenopsis invicta]
MAQDNVKFNIPLLNGGNYVFWKTKVRAILTRDDLWDVVNEPKPAQPDEAWKKRNNKAMATITLSVEDSQLIHFAHLDNAF
DTWQAVLRKYERSTFCSRLYLRRKLYSIHYRSGSMSNHIDAIMEVVGLLCGSGRPLENEEIVAVLLVSLPESYSRLVTAL
EGRDEADLTVEYVTGKMLDEYQKRMESNESSDKNSEVALQSAVANPSNYSRINKGEKDKRVVKRDNKETRTCFFCHKQGH
VKANCRFFKKSSQQRGSSAESGKETAEARSGIQDNQITFSMKEEARAANIGVWYVDSGATSHMTNDRNFFTVLQDTNMKI
FLADGSSVDVAGIGEGYLKCRTTDKLIQTIELKNVLYIPRLDGGLISVLKIIEHGFRVIFEKNDCTIYQGRQVVAKAENS
GNMFRLKTIGLEMIARIANVETCIHQWHRRLGHRDLKAIKPLSKEGLATGIKITACSNEIICEHCIKGKLAQTKFPKSKR
REKEPMKLIHSDLCGPMQTATPNGNKYFLTLIDDYSRFTVVCLLKTKDEVSNVIKEYITMMLTRFGRKPIALRTDNGREY
VTSELTNFLRKEGIQHQLTVAYTPQQNGVAERKNRSLTESAKCMLLDADLNNRFWGEAVLTAAYLQNRIVSxSINKTPVE
MFTGKRPDLRHIRIFGSKVYSFVPKQKRKKWDDKANEGVLVGYDGNTKGYRILNPRTNRIxISRSVRIIEHDTEKKMYDT
IWMKKEKSMIKQHGTFGYEMLPTEDEENSGTDSEEESENCALDEEECEIPVAKPEQPQRRESQRTNKGVPPLRLAYRAQT
NLITEPGSWTEMMELPLRERERWIAAAKEEIKSLNEHKAWELTELPPGKKTITCKWVFKAKSDDEPSYKAQLVARGFSQI
YGKDYDQAFSPVVKHETIRILLLIAAQKKLHVRHLDVKSAYLNGELEEEIFMDQPQGFQKRGQEYKVLKLKKSLYGLKQS
ARVWNKRATEVLAQMGFLPGKADQCLYTRKEKDGTITYILLYVDDLLVASTTEKMIEKISRSIQKHFRIKYLGNVNHYLG
IRIERKEDGSFLLSQKEKVIKLLEEYSLLESRPVATPMETSFLNSGSSARLPNNSKFRQAMGLLLYIATVTRPDIALAVR
ILCRRFENPTVQDWNAVKRIIRYLASTIDKKLELSSTGKMELECFVDADWAGDRVDRKSTTGCVFRLGDGTVAWSSRKQT
SVAMSSTEAEYVAVSHASKELLWLRQLLRDMHILEKDPTIIYENNQGCICLIGSDRCGVRTxCKHIDVCHHHIRDLREEK
VEIKYCPTEAMLADVLTKPLPRERFLELTRCLGIC
>Copia-19_BG#LTR/Copia 100-4545 via tfasty with ATRE1, 59.9% SW:1020, 1 stopcodon. [Blumeria graminis]
MSLAPSSSSSRIILSPGVSLDDWINDLQAKLAKEGVIGHVYHHFEGIRPIHRPAAPTDEIDSADYLPGLDAYTTAVETWT
LGEIRAKNIILGRLNPTMRPRNHDRITAHQLYQSIIDSRRETATAPYALALEEFLRTKFELHADDYINKFLANLQGLNDA
AETLHATTGTEYHVPKGLAAAIFVQGTRHIPWLTNWRDMRACTDQNSYATLESLMSTIRIASGNRTVDPSAQAAPPPQPN
RVFATREPTERLDPEAECRRCNHRHKNRECFKQHPQLANGPRGERWRARKAIGRQGGTGQVADGNVRAVTGIDTDSENED
SVGMAASALSTHTHLVIYDTGASHHFVPCESMFRNMHSRHEPLRFDQAVGDMQLTKQGVARITIGKLVIDLHDALYSPKS
SCIIISAGRLQRLGNITCDADMTRLIMCKPNHEETPIAELLCKNNVYYIKPLTHLPEKHIHTAAPGVARVPKTSSAQRWH
QRLGHTGQKILKKTAQCTIGMEGLDTSELTICETCHLSKAQRHVSREPRPTPFDPLDEVFIDTVGPLTTAHNGHQYAVII
TDARTRMRWAISTCTKDQIATELVQWVEQQHHQYGKRVRSIFRDGGSEFTRIKLHCDQHGIRTDISAPYTPEQNGTSEAS
NKVILRRARSMLIDARMPACYWPWAVEHACFITNRLYCLRTKLIPLLDFLQGLKQPYPNQIDFTNLPRFGCRAYKYIHPK
PGKFDPRAEMGWFVGFQINTNKNFLIYHPHWTPTHGWKWSLSITPHASFNEDIVFGDELNSIDQQQTTSYWTNYDSIFSE
SQHFQPPCTSHSNTSTQHQPEHQPQNYQPHHGQDDQREQPITIPQPSTNPQSSDTHDTQPASHAMDQVVESHNVHTIPNS
PAAHEITLHQTDQQVIQRPKQQLSDQREIYAAETSEPDQPLDRIMTGWDPIPPMAGIKRQHSPEGSITRSQRGRTIKRVD
YYRLHHGMTAQATTDPQTWDQAMTCTEALQWKRAADEEFSSLKQKGAIKIIPRSQLPQGRKPMKCKWVFKKKYLANSNIE
KYKARCTAKGFTQRQGIDYHETFAPTPRPETGRIILVLAYQLGWHRKQGDVPTAFLNPDLNIDLFIELPKGYEKDGYVIQ
LHKGLYGLNQAAALWYDDAKTTLAQLGLLPTTSDVCLYTNHKRDLFVLMHVDDFQVVSPHQSRIDKLMKALHDKYKLKTV
STNMFLGIEISHPYPEMIRFSQGHYARTLLNRHNLSDCKKAVSPIERMMEGNKEKCMSHEMTEYNSLIGGLQYLSNNTRP
DISFAVNHLARFLTNPSQEHMQAARQVLRYIANNPDQGIEFTRHDQQAILEAYTDADFAADPSTSRSTSGMLIRLASGPI
CWKSHLQREVVLSTTEAEYLAATETCRQLQWVKSLIQELGLSDHVEGATRTNLHVDNQAAISLIKNHDNHRRSKHIALRN
FFCREQHENGKITVSYVPSNLQLADALTKVKSPVAIHxVAEK
>Copia-18_BG#LTR/Copia 78-4535 61.8% sim to Copia-8_BRa, SW:1209, [Blumeria graminis]
MSTKSSKYGGTKLTGEDSFDNWKNDLEDSLVVDGQIDLIETKLVPDKNLEREIDAAARSATRLLHAQVSLKISQSVDENH
RSIIGTFKHPQDKNNALISKYEGNNETRYHHLVTRFTDITEGKSMGIHEKVELMRKLRAQVLKIKPKNDIPEWLMIHTLK
LSVDAEQYETTLQVINQSTVELEFEDIISRLASRETELTSDIATANWAGRRQGGYQVRGKREPRGTDTTNTAGFDLTPKI
STNANLLAGGGCFSCGGPHFQNQCPVWLKTSAGKAWVVAQAPRKENAKVARAMDSDSESNASLCFMVQNSDVKRVIWWLD
TCASTHIANRKDVFVEEILSPSNTCVAAANGGSIYSKGSGTVRIHWQNREGKERMTTVKNVAYIPECTNNLISVGKLEDE
GVSLTVDSPNKSISLIKKNKVALEGKRKGRMWRVRPLPRDISNKVYKASPPTPTLIRKNVTFAPNLEVTLDEANSKIKPS
MAQVELLHARLGHPGKQQEAGLRKIMTDLPEHSFCPPFCNACTQGKMTRNPSKEKMRSVSAPLERVHMDLWGPISQHSLQ
GNRYMLSITDQHTGMIWVYFLINKSQAKGKVREWIDTVESQRRRWGISERVKAIRFDRGREFLNTELMKWCDGRDVAIEP
TVGYHPEGDGFAERSMRTIMEKANTMRFGMKMEPELWQLAAKHSVYVHNRQQVKDMELSPWEQWSGKKPSVSQWKVFGCP
AWVYIPREKRKKLDPRAWEGVFVGLKEESEKIFLIWSLKDKRVMEARFVKFDQTGNGVTDGDLIPWEQLDEESKMGDNEA
NDDEDESGDDLDEDCENNDVVGDECIIEDEVVGLPEDQNASANDSDDSILSELTDLVSPTIISNEEECTNSMPQTSIRQP
TQQQTAAEKREIKAQLKRLRQDEIAKESAARRQQTRGDGRRRRDQVNMMKNEPGIHEGVIYKELTFKQAMELPDNEEWLK
AFEIEIDNIIRNKTLSKPIDALPDGVEAISARIVFDAKTNEDGKIIKYKARLVARGFSQIHGIDYEETFSPAIGMEGLRI
IVAIAAKHGWRIHQMDVVAAFLAADLTEDIFLEVPREARHYFGRFVKVLKSLYGLKQAARLWYLLLSGFLEGIGFTASTT
DPTILIQKATGVVVGVHVDDMLITGANEKAIDTVKAQLKSRFEMKDLGDAENVLGIRIKRQPNGAISIDQEKYARGIIQE
YLYEDSLLYATPMEKGAVNNLKDNPGRELNGEEKKKYVQLLGKLMWLNNTRFDIVFAVTRMASFATEASWNHWKALLRIV
GYISGTVTFGTTYGNKDRRGDPPIDYYTLNHGVEVYSGSAQLNDEMGYADADYADDQRDRKSILGCVLMLNGGIVHCSSR
KMHSVARSTTEAEYIGGSEAAKKVIWLRRLVAEIEGKGSAGSAAPMLLGDNKSAIQLASGVSNTSKIKHIDIAFHHILDE
VKKGTILIRWVPGERQLADGMTKALDRVKFEANRRAIGISSVISNL
>Copia-15_SI#LTR/Copia 105-4075 via tfasty with Copia-99_AA, 73.9% SW:2504, 2 frameshifts and 1 stopcodon. [Solenopsis invicta]
MTSESKYIITKLNNGNYFNWRYKMKMLLIEKGVWTVITADAPNPVTQDWTQKDEKAHTAIALNIEDDQIQHIRSCDTAKS
AWKNLQDFHEKNTPNNKVSILRQLMTTRLDEGGNVESHVTKMTELFQRFIAYGDDLSKELILCVTILSSLPESYDVLVTT
LENRKDELTSSVVCSAVIAEYRKRLERSRDNNTEAVLRISSSTKGSSNAKGEAFDVSKSKCLFCKRKGHWKKDCRKLLAH
KEKKSQEQQSKIQQQVNSAEASGSAQHLFAAMTFNSDGWLVDSGATNHIVSRREIFTDMKKHSESIYVANGYKVTAVGKG
TVDAKFMNKSGDIVEVTIKNVLYVPDIxGNFISVRRLNKMGYTVTFHNDECCIVRACDGVQVALGEPCGNLYKLKTPNVI
YAISNPDPEPMKNCVHKWHSILGHRDIQLVKTLPSSDLVNGIHFDECSKECNNILNCEVCLKGKMSRMKFPSSNNRAKEK
LDLIHSDVCGPMQTATPSGKRYVLTFIDDYSKFTAVYLIKEKLEVFGRFREFVEMCKKMFNRKPKLIRTDRGGEYMSVEF
IKFLDQEGIQYQRTAPYSPQQNGAAERKNRTLLEMARCMILEAKLENKFWGEAVVMANYIQNRLPARDIVRTPFENWYGT
KPNLNSFKRFGSKCYVHVPNEKRRKLDSKATEAIFVGYDAISKAYRCYVPSSAKVVISRDAKFVYKDSDWKINQDQFKEE
NEVTITHLPEDEFYSADEDETIEENDPATSDAFRDLQQSPIAQRDINEHVPVNNENEIRIPELRRSTRSNLGVPPCRYTE
KRINVIKEEKVEPKTYNQAISSEQKNDWIQAMKNEIKSLKENETWELVDLPKDRRAIGCKWVYKIKSYGENEIFKARLVA
QGFSQKYGIEYDEVFAPVVKHATYRILFTVAARKQMKVIHLDVRAFLNGKLSETIYMKQPPGFTEEGREHQVCLLRRSIY
GLRQSARVWNQEIHQTLTAAGYIQSKNDPCLYIKYNKGKICYVLIYVDDLIVASEDDNMLEECEKILSAKFKIKNLGDVR
NYLGLQIKRDTNGNFALNHKRYIMKIIKDFGMMEAKTSNVPISVSYGKGGNSELLIDNENYRKLVGCLLYIAVNTRPDIS
ASVTILAQKVTKPTQEDWNELKRILRYLKGTADLSLMLGGINCNTGLVGYADANWAEDVALQQRKSTTGYVFKYFDGVIS
WCSKRQTCVAKSSMEAEYIALSEASSEALWIRRLLRDFKQPEEDPTTIYEDNQSCLKLIKEEKLSNRSKHIDVHAYFVKD
HVDKGTIKCVYCPTENMVADLLTKPLSANRIVKLRETCSLMEI
>Copia-15_AA#LTR/Copia 83-4121 via tfasty with Copia-108_AA, 4 frameshifts. [Aedes aegypti]
MERESELVRIPMFDGTNFPSWKFRMVIVLEEHDLKECVEQEVEEVEALAIKEEDSAAIKKQKEEEAVKRRKKDRRCKTFI
ISRICDSQLEYVQDQPTPKSMWVALHKVFERKSIASRLHLKKKLLTLRHESGTSLQEHFLIFDRIVREYKSTGAMIDDID
VVCHLLLTLGPKFATVVTALETMPEDNLTLEFVKCRLLDEEIKCRGKDIGASVSKREPAAFVGKPTGTKNKWKCFVCQKV
GHKAAECPEREKKKSDKKKTSANVTEESSGGICLLLKVTAEEDQVLADSGASEHMTNDKSVFETLVLEEPIKIAVALSGK
SAVAKFRGSVKVIAAIGNENRECTLENVLYAPDLRCNLFSIRKVEMAGMTVVFKDGGVKVFKDGKVVACGQRRGVQYEMD
FRSKKEGVSSLYSCGKIQKCNELWHRRFGHLSEKNLENIMKKKMVKGFEKNTSDDNSEVYCESCIEAKQTRKPFSESSEK
RSSRVLELIHTDVCGPVTPVAHDGSRYYVSFIDDWSRFTIVYRMQSKSQVLECFKLYEGMVSAKFERKISRIRCDNGGEY
RNEHFERFCRKKGIQMECTVPYTPEQNGVSERMNRTLVEKARAMLFGSNVDKRFWCEAVETAAYLVNRSPASALQDGKTP
SELWEGRKPDVSGLRVWGSPSYCHVPKEHRKKLDSKAWKGIFLGYHCNGYRIWDPRWKKVVVLRDVIFDEAGTVDEPNEQ
GNLPDLVRIRRPPIDTELDGSEVEDVGDHQDDMDGTFDEFEDCEGATGGSDSAGASGRDTAETSGNHFNSENESRVADSN
GHSVRKRAPPKWHDDYDMSCAYALSAMNFVESFPDTLDEMKKREDWPQWKTAVDEEMKSHQKNGTWTLCKLPEGKRAVSC
KWVFRIKRGEDGGVDRYKARLVARGFSQRFGYDYTDTYAPVARLDTVRTVLAVANQERLEVHQMDVKTAFLNGRLREEIY
MTLPESVEGRPDGVCRLNRALYGLKQASRAWNERFHELATKLGFRRSENDRCLYVRQEGESKLFLLLYVDDILIIGRNLM
DIVKVKKHLAAEFEMSDLGQVGNFLGMRIERDIQNRVLRITQRTYLESLLRRFGMEECKPVATPMECRLKLKKGVETERT
TQPYRELIGCLAYVAQSSRPDLCAAVNLLSQYQSCPTNEHWGYVKRILRYVKGTLDIGLEFRGGERVEALVAYSDADWGN
DENDRRSISGSVLRVFGGTVMWLTRKQQTVALSSTEAEFVALCTAACEGIWLRRLLSDLGVTVEGAVTYYEDNQSCIKVA
EEPKDSRRLKHVDIKYNFIRELVQDGRIAISYIPTEKQLADIMTKGLPAGAFGRLREDLGLQRLSRG
>Copia-14_CP#LTR/Copia 31-4140 via tfasty with COP20_MT, 81.3% SW:3838, 3 frameshifts and 2 stopcodons. [Carica papaya]
MASSSTTGVQIQQVQSSIFKFDGKNNFAMWKHLMELCLRSNGYGEILDNGFVEKEKSSAAGLQDLVRDHSLNEKALFLIC
QSVELSVLEKIFHAKTTKETWNILLKTYEGADPVKRTRLQGLKRQFELMEQRKDESIRDYFSxMEKLINEMKKIYGDQIN
ERDVMEKILRTLSSRFDYAVTAIEESKNLDTMTLNDLQASLESRRCRMNERSPSTIEQALKAKLNLKDEKKRLDHNNSQR
GSNLRGRGGGNFRTTSRQGATENESSQGKSRIQCHKCKKYGHYQLECKSHIQCHNCKRYGHYSRECRAKRSEHRENQVGV
AQNDSVETLLMAAHDSNGSNNSQWLLDSGCSNHLSGNKEVFSELDELFRSSVKLGDNHEVPILGKGRIAIKLNNGSADYI
SKVYYAPTICQNLLSVGQLAEKGYDLCFNKHGCTVSDTKKGMILKTKMSSNRLFPTQINYGNASNCNSVIVDDNWLWHMR
LGHLNFGSIKFLANKEWVSGLPTIQVPDQLCEHCVLGKKHRDPFPTKQAWRAKSPLELVHSDLCYVDAPSNRGNKYFITF
IDDFSRKAWVYFLKHKSDACGIVKNFVAYIERQSGYSLKTLRTDRGTKYIVCDDFLRKHGIKHQLTARYTPQQNGVAERK
NRTIMDMVRSMMHCKKLPKSFWAEAVACAVYILNRCPVKSVRDKTPQEVWSGRKPNLSHMRVFGCIAYSHVPDELRKKLD
DKADKCIFIGYSMETKGYKLYNPKTQKVIISRDVTFDEDGVWEWSEEEKRSLSVPVFINNEIETSNHTGEQSSPPVSEES
SSVAPEASSPPVLRRSQRDRRPPTYLKDYEVSNDPDDDEDVVHYAFFADCDPIVFEEASNDDRWIKAMDEEIFAIEKNNT
WELTTLPNGKKPIGVKWVYKTKYKPNGEVERFKARLVAKGYKQKSGIDYFEVFAPVARLDTVRMIISLAAQNCWKIYQMD
VKSAFLNGVLEEEVYVEQPPGYEKKGEEDKVYRLKKALYGLKQAPRAWYTRIDTYFLDHGFQKCPYEHTLYIKTNKDGDI
VVVCLYVDDLIFTGNNSRLLSEFREDMIAHFEMTDMGLMSYFLGIEVNQTDKGIFISQKKYAGDILKKFKMEACKPILTP
VEERLKLIKDGSGDLVDATNFRRLIGSLRYLTATRPDIVYGVGIVSRFMESPRQSHxQAAKRILRYIKGMLDDGILYSTT
NKIELVGYTDSDWAGDTEERKSTSGYVFNLGSGAFSWSSKKQQVVALSTAEAEYIAAASCAAQAVWLRRMLNELKHQQDG
PTTIYCDNQSAIALTKNPVFHGRSKHIDIKHHYIRDLVKDKEIVVEYCASEDQIVDIFTKPLKADIFIKLKKMLGLVKSS
LREDVGQLNLI
>Copia-15_BG#LTR/Copia 66-4276 via tfasty with Copia-26_BG, 70.3% SW:2589, 1 frameshift and 1 stopcodon. [Blumeria graminis]
MPTTVTINDIKSGLPTLLGASNFRRWYNTWYVSLRGAGLWSVVDDGDNKESRPSRVKREGTETIEDLQFNYDKRNDSANA
LLVSGVSEDLQDLVSSVADERESARVAMRLLKTKFDHETTTSTLNLFTNFLDLKMDDGDDLSNHLSNFDTSFHHILSRCA
QSKRPESKALKDFLSVEQVxTMCLFRSLPPSMENVVDNLSTKDGLKYADISAHLSDLISKKTSTTNPPSKAYFSSNNIGK
GKGKGKNKGIKECSWCKKNGFPYKGHEHRECQKLKEMKESSIGRASDNIRPSNYANAVSNPHLTNDYCGASHVISENAFA
ASTSPAPSHWILDSGCTTHMTSCKDLFSSIHRQKGTVTIASGVQIPVLGCGTIYLDLLTSFDKRLSATLDNVLYVPDLKG
GNLISADKLERNGYEINSKNGQRRVLKDGQEWMYAALDNMGHFVIREFSNSTLFTSYMDAHLCFGHPGQNAMHHLKERYP
DLIPKRPDHFHCPSCILSKSTHVSPKARTSRSEKPFDIIHSDLSGKFSVDSLGGKRYYITFIDDYSRHAWVSFLRNKNDT
YSAIRNFVHRIKNQYGVTIKKFFSDNGGEYVDGRVENFLGECGIDLLKSPAYEHESNGVAERFNRTVVTKARTMLLDFPK
FLWAESIATAVYLYNRTPHRTIEYRSPLELVDKTPLPTVSHLHHFGCKVFVHIPDESRPSGSKLQPRAMEGYFVGYTNSS
NIFRIYIPKKRSIQVTRQVLFLPNKTGEATLDLLQSQIGDEHPGHAPPSPTRTTPCATFDTPTRPQTPDSSNFPGSFVDT
PEIPQLPLPMTPHEPLCEPEVPRAPRRDHRKLLMRRETAIEPRQEGLVSDNSQDNSHGNPKRGTRERRQADPGPGMVPNT
QRYQAYAVTVEPRTYQQAIQANDSEQWKNAITEEMDALHRNNTWEVVPIPRDRNVVGSKWVFKIKHKADGLFERYKARLV
AKGFSQQPGTDYDDTYAPVARFDSLRLLLALATHNGWTPRQLDVKSAFLYGNLDREIYMQIPDGYRTSGKCYLLRKSIYG
LKQSPLVWYSTLSAVLQTDGFTSTNFDPCVFVDLNRKTYIAIYVDDILMFGSDEKILDNLEKTLHSRFECTDLGTVHFIL
GIQVEITEKYLSLCQQSYILKVLERFGMVDCHPVGTPLDPGTQLRNGTPEEEIDDPTTYQSIVGSLMYACIATRPDLAHT
VTLLSQFSSCPNSTHLAAAKRVLRYLKGTANWKLHYPRRNDLTLHGFTDSSYGNFIDDRKSCAGYIFRLGEASISWSSKK
QKTITLSTTEAEYMAMSDTARHFIWTINALSELKQPYKPIMHADSNGSIDLSRNNKVSQRSKHIDIRYHFIRSHIDTTFK
LEYVSSRDNLADLLTKQLPKTDHQRLSDLVRCSSEGKCCRNLSS
>Copia-15_EPa#LTR/Copia 61-4409 via tfasty with ATCopia22, 86.0% SW:5288, 1 frameshift and 2 stopcodons. [Eutrema parvulum]
MTNEVRRTISPYDLTVADNSGAIISHPILKSNNYEEWACGFRTALRSRKKFGFLDGSIPRPAEESPDLEDWLTINALLVS
WMKMTIDPELLTNISHRDVARDLWEHIRKRFSVSNGPRNQKMKAGLACCKQHGMTVETYYGKLNKIWDNINNYRPLRTxK
CGGCVCNLGTQQEKDKEDDMVQQFLFGLDETIFHTIRSSLTSREPLPTLEEVYNIVRQEEDAVNNHRIKVEKPEITAFST
QIRPRFKTEERERFGICKHCNRRGHAPENCFVVIGYPEWWGDRPRGRSNTQGSTGRGRGRSGFSGGQSRILSSSYANAVT
AGTPSQEHANYTVTDQDRDAVTGLTDDQWRSVTKILNASKRVGKEASTSETLTGMSFNSPSWILDTGASHHMTGKLELLK
DIRQISPVLIVMADGNKRIAAREGTVHLGPHLVLKSVFFVEELKSDLISVGQMMDENRCVVQLADHFLVIQARTTRMVIG
VGKREAHSFYFRGMESVVALQTNGKSSLDLWHKRLGHASTKAICLLPNVEFxISSEDHNKVCDTCMRAKQTRLSFPLSQN
KSSKIFQLIHCDVWGSYRTPSHSGVRYFLTIVDDFSRGVWIYLMVEKSENQKHLRHFMALVATQFETKVKTLRSDNGTEF
ICMREYFLQQGIHHETSCVGTPHQNGRVERKHRHILNVARALRFQSHLPLQFWGECILTAGYLINRTPSAVLNGKMPHQL
IYDSVTSYEHLRVFGSLCYAHNQHHKGDKFESRTRRCVFVGYPHGQKGWRLYDLDENVFFVSRDVIFNETVFPFLSTTKN
DDEAPPGPATNQPTTAVLLDLLSDNGPPDTPHGPEMDDPQIPAPPSPIPPTSPTLADDDANGVNISTAPEPPPIVQTQQP
TLGETLGRGHRKRTPSVTLKNYVTNTVTAQSLYPIANYVDCHRFSETHKAFLAAVTAGTIPYTYNEAVKEKIWRDAMGNE
ILALDKNGTWTIVDLPPGKKAIGNKWVYTIKYRADGTIERYKARLVVLGNHQKEGVDYADTFAPVVKMSTVRLLLGVAAV
KNWHVHQMDVHNAFLHGDLTEEVYMKIPHGYLTKDSNKVCRLHKSIYGLKQAPRCWFAKLTTALRTYGFKQSLSDYSLFS
YTKSGVNLHVLVYVDDLVIAGNCSNALQRFKDYLSTCFHMKNLGILKYFLGIEVAWNEHGFYLSQRKYVLDIITETGLLG
AKPAQFPMEQNHKLSLSSSPLLHDPCKYRRLIGRLIYLAVTRPELSYCVHTLAQFMKNPREDHWEAGLRVVRYLKSNPGR
GILLTTTSDLQINGWCDSDWAACPLTRRSLTGYFVQLGDTPISWKTRKQPMVSLSSAEAEYRAMSFITKELFWLKQMLKD
PGVTHDQPMRVYSDSKSVIALTDNPVEHERTKHVEVDCHFIRDAIVNSTISTTYVRSQNQLADVMTKALGRKEIHSFLRK
LGILDVHAPT
>Copia-15_DPu#LTR/Copia 44-4435 via tfasty with Copia16-NVi, 3 frameshifts and 6 stopcodons. [Daphnia pulex]
MSNSKETAHIATYDGINFSMWKLGLWVLLEQHNLIGIVQGEELLPDMVxKSKLALFTLDTIYLSTLFSFNKQNFACNLAN
ADAIASWKQRDCKARGYILSMIEVSQQRILIGCTSANQMWQALCNQHLEQASDNLYDLQARFYQYQYKEGNDRKTHIADI
KEIAHHLGEVDKAIEERELITKIVCTLPAPFRNFVSSWRHISVDRQTMVSLTSLLLQEEREIGRWTPKGDSSQEAAFHAK
QSASSDGGNNQSTQHALYAHPPAGPSHHNNRYHPKRGGRSNNRHQHEKDRQTRQHDDQHSKSTMKCDYCTMDNHNTVDCN
TRKRHERTDRKREQMAKRVKREHRKKAIFDAVVDVPLEDQDYSLMSITPRFETRSNGDWFVDSGATQHMTDQREWLTNFI
DVPDSSRTVKGIGSSNYPVRGSRDVQVWIATTDGVKKPATIKGVLYVPGLVTNLFSIAAATDLGWMATSQRRKCLLLICR
xKKNIMFGKRVGRTLYHLAINTRYEEEAESTIALPSSISPGISTWHRRLAHVSYNTIVKMASSGVVDGLDIASAVIPSES
xTGCAYGKHQRLKFPVGRVRATYTGQLIHSDLCGPMEKATLRNGARYFVLFIDEYSGxRFIFFLKHKSEAASKFMELINI
LRGETGNLVQTLRTDGCGEWSRNDFTExLLRKGIRHESSAPHTPEQDGVSEIGIRTVTEWARSCLYDSPVPSEPWGEEVR
SGTTELIKDCRLPLCLWAEAANFTVYSLNRVLCKTSFPVTPFEKYHNKRPNLSHLHVFGSIAFVHVPKAERRKLDQKSLR
FIFVGYSSYSEGYRFWEPVTRAIKISRDATFDEHHRLADATKETSAHVHPPNNNSIVLEPNQHTIPLVEPTSPDLLVKGV
DDLTTVKKKQPSPSPEEIDPSKDVTNPLDQREPEDDQHLPSRRSLRGRIPRREWKAWSAKFGFSAPYEPSSYKDAMNCPE
YEKWKDPIKEEYDALIENDTWEIVPCPPDRKPIECRWVFTIKPAPNGVPPKYKARLVAKGFSQRPGIDFDETYAAVVSHD
TLRALFSVIASQDLEMHQSDVRNAFLQPLLEEEMFMKQPEGFILPGREQVVCRMKKSLYGLKxAPHVWGELSTSFLKDQG
FESSTAYPCLFIRLRGEERTYLAIWVDDAIIASSQQSAIDALLTTMDKTFKIRAHPVTRFVGIDINRDRAARKIYLSQED
YITKIVGAFNMESCAPKDVPADPNVRLIKPINDQSLLTNVPYREAVGSLLYLALMTRPDTSFAVGLVSRYSEKHDQTHWN
AVRRIISYLKGTSQLGICYNGSTSGPELLAYSDSDHAGCLDSKKSTTASVFLLHGGPIAWKSRHQRCISKSTTVSEYIAV
SETASDAVWIRRILPDLIPGWGKLPVRIFCDNQAAILLTAHQHQRQSTKMVDIHYHYVREQQKKKEIVLEYMKSADQLAD
ILTKSLPVSRFTDLRNRLGIVQVQH
>COPI2#LTR/Copia 35-4048 [Oryza sativa]
MTTSMKFDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQLHLHNDILQECLTEK
TSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANF
RDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCK
LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKG
DVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNS
AKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTS
VHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGG
EFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKT
PIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPS
EHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIE
ECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSS
EPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGK
EKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLS
SEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVP
YSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLDRR
RSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSESAIYLTKDQMFH
ERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGLIE
>R1A_SS_pol#LINE/R1 1-1532 Fragment, via tfasty with R1B_DS_pol, 1 frameshift. [Scolopendra]
AMADDSLVLVAAPSVKRIEELWIVCREDLENWATENNLEFNREKTGLLFHSWRPVLRPPVLRFGGVDLVPSTGVRYLGII
VDVKFDWLAHVRFLAGKVKRMANRISVVVGANWGIKPLVLRTLYLRAILPMLLYGARIWGLRAGRVFMQKRVNALPRFLL
LNIARTYRTVSTEALYVLCGLPLLAIVAEETALHYARLSGPDYCRDTPVAEWTHPADRVALPVGTYETMDATRLQLFTDG
SRREGRTASGFVIYDNGVQIDHSSVRLGDGNSVFQSEVLAIWFAVMAIRRLAVDEASLFSDSLSALTAISGSNPVDALVR
RTRVAVDELCTTCSLHLGWVKAHVGIAGNEEADRFAKLALDKDIEHRKLLPRSHSSLIKQRTIFFQWQALWEGHKDGRPV
FALFPKVSSRGALFGRKMMQVITEHGNFAKYLHRFALMESPACRCGGGEESVAHILRECDLPFRAAARSRFLREMVPRGL
TWADMDGSWCRDEFATHFERFVNDVISDPFT
>R1_Px_gag#LINE/R1 named SART1Px1 by Kojima and Fugiwara gi|22004000|dbj|BAC06449.1| gag-like protein (22004003, 22004006, and 22004009 over 99% identical, 22004016 and 22004019 close, 22004022 over 90% similar) [Papilio xuthus]
MMASLKTNLPQEGTTSSAGGESLPEATLASGCPSYSGGGKNCFDCTTTLALNMDTDARDVEVTGSGMEEEMELDTELMLS
EESTSMSESSRRASPLPRKRRGRPPTTGHYVGLAKAKLALIEAEREEERRRAEAEVVAASRVARARSQAHRLSETATEDE
EFQAAGSLGQVIEENIEVIKKMATTSKNLKGGYVRALKDAAEEITKMTKALQRRTTSEETKGLQADNARLRAEVAQLRKE
VAEMKKHLLAPNERSEVAVEARRQPEPQPQRQPNDSEELVRTILCQVGNMINARFEALQDRLLPEKRLRPQLAADNRPVS
ESRGAPEVLKAAGKAXGKTSGKVPNKAPSKPPKEKTTAEPQAQPQPTAAVEPADHQPKELPWTQWSKKGLRKRRRTDRGC
TQTPKERKRQEHHQTGHPKTAAVVVSITPEAIAKGLTYDAVIAEAKAKIKLQDVGITTGVRFRVCATGARRFEVLGTNNG
PQADALAERLTQVFDTDLVRVSRPTKTTEVKISGLDDSSTIEEVLAAVAEIGGCPRESLKSSGVVRDRFGVGHAWVECAV
PTARRVAAAGRLTISWVSANVTLLEPRPMRCYRCLQKGHVRAQCNAEEDRSKLCFRCGVEGHKFKGCMAKPHCTICAAAQ
KPADHKLGGRGCSAPAPKISRGKRTAQPQPAQQAPEEAAMETEEVNIRNGPTPTTSQC
>R1C_NGi_gag#LINE/R1 668-2368 R1C_NLo_gag and R1C_NVi_gag over 90% identical [Nasonia giraulti]
MDTIKTQLRKMTRSSKGVGCSREDFLKKDSKGGGGDSEDTRSSVYSADSLRERSRSRSPTGLKSTKDFELVESKAARKQR
KAEEKRRRRENANASVNDRMNKSVSCSVQDVSKKVNVSRSENDVSKTGATESMEVGMEECASMKESANVKRTVKRNAVGQ
DRFKGAKGELFVVCENLRQPLKRIKREVADAEVPVDSTSVSVNESAEVSEVVVDELRAVTDGLRGHLLSDANKFTKWQAN
SVLDHASKFEGLVQRLMLENARLRGELSAHTGIKADLVNVRETVRRVDESMNVVKTRVAAASRAPPAAAGAAPGKGSGAN
VGPKPSFALVVRGANEQLTCDEVRRRMIESTSEDVNVRVRTIRPARGGGVVVETASDGERKALSRCAGLAEAGLRAAEPK
VMDPRVIVYDVPNEMTNEHLLRGMYDKSLSEHVSVNEFTKRVKIVRRVDGQRLGNVIVELPLPWRDRLLQDGRVFVGWNS
FKCCSYERVMRCFRCQGYDHRAKECKSEPLCYRCGKSGHRINVCKAAEDCSNCRARRLPSEHSARSPECPVYAWRLQLLR
SRFVNNG
>R7Ag2_gag#LINE/R1 1132-2610 via tfasty with R7Ag1_gag, 2 frameshifts and 1 stopcodon. Masked Q richest regions.  Overlaps gi|28569881|dbj|BAC57917.1| gag-like protein [Anopheles gambiae]
MDRNLRPRQPSVDCSLEAIPKKTTVSAKVDTGRTSMTAKMNEEKEIRLHLMLQAEKAEKAELMKTVASLQATIEGLQKQL
AEEQQARLSADAELREERDAMLAEIRDLGQxMRRELSWKLGQQQQLQLQSQPGPSGTAAVKLPDHQAPTAEGIRQAEQLS
FAEVVRRKFRGMAKGKLRQPPXXXXXXXXXXXXXXXXXXXRYPQRQAGRWHAAATKQXXXXXXXXXXXXXXXXXXXXXXX
XXXQRSNATQAQRREQLRNEQRRPARLRQDQIIFEPAEGTSYKVLYEKIRLNPRLQEENKGVHQGYRTTRDFLRLELKKD
TDAASLLQRIQQEVGDLAAGRIVTEMAEVLITGIDMLAKKEDVERGLQRALERTAVAATTSLWERRDGTQRARVRLPRRD
TDLLLDKRIVVGHSVCLVRSAPKQQQSAVRCFRCLERGHTTADCAGEDRSSLCLHCGAADHRAASCTSDPKCIVCGGPHR
IAAPMCKGPPSQC
>R1NS-1_CQ_gag#LINE/R1 893-2506 [Culex quinquefasciatus]
MVNSKTNVHYTXEEVXRLNXXIRSAGNIRSDITRSGLSLXVLARXAEELWKEXRSKYNALAEEASAEKAARLLLEZRVXA
LEVHNDSHPSIEVEDQVTHSEFXXLREQNAALQATVEELSKTIAELAAAKPASEQAALDSEVYALREQNQALTAEVAALR
ETAVTQPPSESQSGAQATLSSELAKAQQEILTLREELKGLKEEEAKRESEPKSGKSGKTGKNKGKNKGKNQQNQKPKQAK
GGAKNADPKPAVPKTPPGSKEDGTSPEGASQGGNPGDGSGEGNANDGFTVVNRRKPRSKHKPRTRNEAIAIKADEKSYAS
LLRNMRSNDDFKDLGEATKSVRRTRRNELLLILKKGAKPSSEYARLVAESVGSDEIKVRSLCPETTLQCKNLDETVTAED
LLDAITTQCLTGTLSAPVQLRKYNQGTQTATFKLPAKIAAMVLKVGKIKVNWSVCPVSAIERPTVCFRCLEYGHKSWACK
GPDRSKLCRRCGAEGHQSKGCTAKAKCLICTGDGSNHATGSYTCPSFRSAFDKLRPCK
>R1_DMo_pol#LINE/R1 1842-4943 [Drosophila mojavensis]
MFSIIQANCGRSRAAVVDLGVRMRNSGAMFALLQEPYVDRGGRITGLPAGMRVFSDRRNKATIVVDDQEVVCMPVSSLIT
EFGVCVSVSGNFGSIFLTSVYCQFNAELEPYLLYMDAVLLLASRTPVIYGLDANAVSPLWFSKLPERSRGYLNRQRGELL
ADWVQGSRAGVLNVRSRVYTFDNRRARSDIDVTIVSDSASTWAAYDWSVSEWDLSDHNIITVVVTLDPESTVESFAPVPS
WQLQNADWRRFGDELRTASMDIPLEDFRLLSSDAQVTALRSLVHQVSDTLFGRRQPRARRRVGWWNAALTDARRTLRRAR
RRLQHARRTQSESASALASYFRITRKEYERMMLKAKEEDWRRYVGEHQDDPWGSVYKICHGRKTRTDFGCLRWNNEQYVT
WHDCANVLLRNFFPAAERPVDIVVPREVPPALETFEVEMCIARVRSRRSPGLDGITGGMVKAAWRAIPEHMTALYSRCLA
DGYFPLEWKRPRVVALLKGLDKDRSDPASYRGICLLPVFGKVLEGIMVNRVKEMLTDESRWQFGFRPGRCVEDAWRHVLS
SVEASSARYVLGVFIDFKGAFDHVEWDAALRRLSDLGCREIGIWRSFFSDRKASIVSSFGEANVNVSRGCPQGSISGPFI
WNILMDVLLRRLEAHCTFSAYADDLLLLVEGNSRSQLELTGAQLMEIVGGWGIEVGVSVSATKTVTMLLKGKLSAGRNPA
VRFAGANLRYVTQYRYLGITAGERLSFLPHIASLRDRLAGVVGALTRVLRVDWGLSPRARRRIYAGLMVPCALFGASVWY
TVVMRLVGARRSLKSCHRIILIGCLPTCRTVSTDALEVLAGAPPLDLVATRNAMQFKLKRSYPMVEGDWLYDQDVSTLDR
TMRRALLDERLLREWQIRWDDSEHGRVTHRFIPDVSFVYSRPDFSFTMPTSFLITGHGSLNAFLHARGLSETAGCLCGHP
LEDWLHVLCACPLYADVRDLQGLRIQQSESGDWTMERTLMEAESMQLLEDYARTVFSRRRMLMDGMGPGRPVPD
>R1-7_DPer_pol#LINE/R1 1977-4970  [Drosophila persimilis]
MQLIQLNLNHCRAAQDLLTQTVRELGSEVALLSEPHKVGSSSDWATDLTGKAALWLCGVDAPQLRDTKSADGFVRGYVGG
IWFYSCYLAPSLSLETFSRIMDELSCDLRGRNNVVVGGDFNAWALEWGSSRTNARGRTVLEAFASLDVVLLNEGSQHTFS
RAGVGSIIDLTYASSTLARHARWRISDVYTASDHEAILCTLGTLARSRGTPFRHGKAYRQDTLRAQAFASALESYSANDA
DGANDMATKLADALEGACDQSMLPRGTFRKHKDPVFWWSEAIAVLRRTCHRARRLLQRARGTPRLARCSETYKAARKDLK
TAIRNSKRECFLKLCDAAEEDPWGGAYRMVVKRLNAGSKAPTDPEALEGIVSVLFPRGRQIPSSLRFEHSPSDICEVTEA
EVLQAGRNLIPRKAPGPDAIPNSALKLALLLLPREVAGLFNKCLQEGTFPERWKRQRLLLLTKPGKPPGVASSYRPICLL
DSMGKVFERVIGARLSAAIEAAGGLSQNQYGFRKGRSTLDAILRVVQTAEEAIAGTRWRGGTKSYCLVVTLDIRNAFNSA
DWTRTLEALRSFNIPGYLLNIARSYFSNRVLTMDTCQGSRAYEVSAGVPQGSVLGPLLWNAMYDGVLRLPMPANTNLVGF
ADDVAIVAVAKELAAVEELANVAIQAVEAWLAAAGLELAAQKTEAVLISSRKVVETARVQVGGTAIQSQRSIKYLGVLID
TRLSFKEHLEYVHTKAGGTAGALSRMLLNTRGPKQATRKLLTSVVTSQMLYAAPVWAEAAKVRSYMRGVEATYRLCAIRI
ACSFRTISDEAALVIAGQVPLRELIRERKEIHDAMTDSAAEARSKAEIKDAARRTSIDRWQTRWDHSPKGRWTHTLIPSI
ACWVERKHGQVDFYLTQALSGHGCFRGYLKRFGHETEDWCPECGTGIEEDARHVLFDCHRFDLERQTLETAAGSRVSTET
LVPLMLADPKVWEAAAEFASSVMRTLRSLERRRKEQTE
>R1-7_DPer_gag#LINE/R1 502-1983  [Drosophila persimilis]
MEEEEKLAFRKGSMLARSPAPEPSPSPAAAAQSRDLDSRETPKRVRDPASPGSSQRQTPPKKSKAHQEATCLENLSELGK
ILDEVQTRMMDKNTRHINMATRALFVRMKELHSNIIZSSQEAAAGRSAPQEGSDAQGLCPKCSQSTRSADKEQQTTTVWR
KDAAAQTEPWRRLSQPSVAEGPLGEPGTPPTRPRQRKGAIATKRTLKKAPLRPHGDVATTSAMRQPKSPGIPDSEWSVVA
KRPRAARRARPDAVIVQASGKSYSEVLAMVTRRHDNQLSDLGSCVSKVRRTINGNLLLEVAKDSVESAEGMKASIARVLG
DGASVRAMTEDSKVVILEIRDIDSLATEQEICAALTRQFNIDEGRVRVRSLRRGYAESQLAVVSLPFSLGQAVLKGGKVR
IGWTICRIRERDGLPRCYRCLEPGHIARNCKSTVDRSGCCIKCGEKGHKVAECKKEPACFICSAAGKKEVTHQAGTKNCP
ATRSGVGKTRTTCS
>R1-10_DWi_gag#LINE/R1 297-1574  [Drosophila willistoni]
MPLQRTPPPPGQGAVQQVAPSLVAQNAALTVETCQDATPKRSRDSTAYSPNSGGNVPPKKSKVQPKVKALDEMSILLDSI
AVHYSKEKDASGKINRSITNTFREKVARLQELVVVARCHERSGPTQVSPRVRDNKEVRKKSAQQPADKREEQPHDPAQKD
NNTWQRVGASSRAARQKSGIPRRVKPEALLVQPASGCSYSEVLAMVTRRSDDKLKRVSEQVIKVRRTVKDGLLLELKGAP
EDKQLLKDELKHVLGESAGVRVLAPIKHAIIRELDELTEPCDLIAALANQASVDEDCCTVRSLRRGLSGSKVAVISAAET
VMRKLLALGRVRVGWSCCRIKELDELPKRCYRCLRAGHISAKCPSQVDRSNCCLRCGVEGRKAASCGVKDPICFLCQEEG
RQPTNHFAGSHRCPLNGTKRQPRAHQ
>R1-13_DWi_gag#LINE/R1 764-1930  [Drosophila willistoni]
MDTMFNKGDDGKKPVRHINLGTKNAIVRMKELHEAICHIMMGSKSVVKAARSEIATQTSPLNARQPRNDAKXIDLAGNTP
KRQREDAIVQRNTPPKRQRAMAQNTARRDPEPGTLQKVSTPEPQAAHGAAEWQTVSRKRVNKPSLRKARPEVILIKANEG
CTYAEILSLVTRRPDGKLDDVKNSVKRTRKTATGDLLLELKGGGKANSKKLTEDLSQVLGQQASVRAAGAEAWLEMRNLD
NLATEEEIKKSMXLKIGDDAEQVNIRGLRKSFRGKQMAILSMPRTIAAKLLKEGFIEVGWDMCPIRERHAQKRCYKCLCF
GHKAENCTSAKDRTNWCLRCGQTEHKAATCNNKPVCFNCVDAKRTDASHYTGSRRCPLATTGEQDASKK
>R1-12_DWi_pol#LINE/R1 1852-4860  [Drosophila willistoni]
MIQPHLKFLQLNLNHCIAAQDLLQQTVRELSADIALLSEPYRVGESGRWAKAACGKAAIWCCGSNVLVMQDVLSADGFVR
ARIGRNWVYSCYLAPSLSLERFGSILDSISNDARGRQGLIIGGDFNAWATEWGSTRTDARGRILLEGFANLSISLLNVGT
QHTFRRAGTGSVVDLSYASDXIAASAVWSVGVAYSASDHEIVTFSIGRNRHPPARTLPLRKSFKLDTLNPLLFAESLEGL
TXCPNTNAEEAANLIMSRLDEACVASMAQRGSFSRHHTPVCWWNEAIADARRACLRARRLYQRARHSLNFEALGLEYRRR
RKALKVAIRDSKRECFLELCDSAEQDPWGKAYQTVVKRVHGNRQSSPSDTTTVRSIVSSLFPDAPELSHVSPLGTHLQVE
ECSLAEVIETVRRQKPNKAPGPDSIPNTALKLAVTIHPHVFTELYSKCIREGVFPTRWKLQNLVLLPKPGKPPDEASSYR
PICLLDTAGKVLESMLCSRLESAILAGGGLSEHQFGFRKARSTIDAINRVVHLAAEAIDGSRWKGGSKEYCIVVTLDVKN
AFNSARWDRILDALATFNIPSYLMNCVRSYFRDRRIRYSTDDGLEERGVSAGVPQGSVLGPLLWNTMYDGVLRLEFEXHT
HIVGFADDVALVVSAKDLHVAEERCSVAIAKVGHWLSAAGLKLAAQKTEAVLISSRKRVETARIRVGDSLVVSKRAIKYL
GVMLDTRLSFKEHIEYCSSKAAASARSLARILLNTRGPKQGRRLLLSSVVKSTALYAVPSWIKGVEVRSYRRSLESTHRL
SAIRVCSAFRTISDDAALVIAGMMPIDECAAIASATFVASRQSSGSNITQPRGQARLMAWQHSMRRWQERWDSSPKGRWT
HALIPDITQWVSRKHGEVDYYLTQLMSGHGCFRSYLKRFHHDVSDECTWCGAGIIEDASHVLQHCPRFDEERHRLERVMG
EPVTQCNLAGMMVANSNVWQAAAAFAAHVMKKLRQLERERSAN
>Waldo-3_AAe_pol#LINE/R1 2294-5389 [Aedes aegypti]
MPGLHEGDCYQTTVEVIQINLNHCDTAQHLLRQSVAEYKCDVAIISEPYRVPAGDGNWIADNAKSVAIWTVGRYPFQEVV
HRADEGFVIAKINGVFFCSCYAPPRWSIDQFNEMLDKLTEELTDRRPVVIAGDFNAWAIEWGSRFTNSRGSSLLEALARL
NVDVANDGTTSTYRRDGRESIIDVTFCSPGLSGSLNWRVSEEYTHSDHQALRYNIGSGRQLEARAIPSKERRWKTSQFDK
EVFVEALRLERNAQHATANELTAALARACDATMQREGKPRHGRRPAYWWNSTIADLRTSCFRARRMMQRARNDAERADRR
PAYKAAKTALNKEIRLSKKACLEELCRNANSNPWGDAYRVAMAKLKGPAVPPDRCPEKMKTIIEALFPRHEPTSWPSTPY
GAQDNDEEEAQVTNDELIAVAKALKTRKAPGPDGIPNVALQAAIQENPDMFRIVLQKCIEEGNFPDIWKRQKLVLLPKPG
KPPGDPSAYRPICLLDTVGKVLERVILNRLTKYTEGENGLCDMQFGFRKGRSTVDAIRTVVEAMDTARKQKRRGNRYCGV
VTLDVKNAFNSASWAAIAESLHRLEVPEYLCKILRSYFQNRTLIYETDAGKRCTTVTAGVPQGSILGPTLWNAMYDGVLK
LSFPRGVKIVGFADDVVLVVIGESLEEVEILATEAVDAVEEWMRGKKLVLAHHKTEVVMISNRKAVQKARISVGQCTIDS
KREVRHLGVMIDDRLSFNSHVDYACERAVKVISALSRIMPNNSAISSSKKRLLASVSTSVLRYAGPVWVTALQTKRNRSR
LNSTFRLMAMRVASAYRTISSEAACVIAGLIPISLQLEEDSECYRDRRTRGIRKRARDETMRKWQQQWDSAENGRWTHRL
IPCLSTWVNRKHGEVNFHLTQFLSGHGCFKKYLNRFGHARSPLCTGCGDVDETPEHVVFECPRFEHERAEMTSVVGNDVN
VHNIVQRMCADEEKWDAVNRTIVQMMSLLQRRWREEQRHSTQRTAHGSESLGQPESSDRPWRLTSQPVEESI
>NeSL-1_ACa#LINE/R2-NeSL 108-4163 [Acanthamoeba castellanii]
MAAKSVACPHDGCANKYASEASLRRHIKNKHATDEEGDETSHSCPHCHRPFSTARGLSVHIGKSHRQAPPEPTRPPPAPA
PADPGLDPDPGPTVTPPSRDDEDREEPDDDPVEIADLSCPHCAQALPSAHGLANHLRACKDHRVPAPGAPRSGPPSSRYW
TAVEHHRYVEAMARFADHPDLLARAAAHIGTRTYKQVDSHRTKVIAAEREGRPVRTLDPTMDWRMRPYCASTTARWLAEQ
GRSPVAPRSPCPEPHAPPPAAALLYIPATPPAPTPRAPVAPPKLAPPAESTVPATPDGNPEAPAPPFSAPGPPTPKALPP
PPPSRRNLRPHLVPKDAWQGVADAVAPAASRLLRTPLAHLSTEQWATFEAALAGLEATLHHAARSAEAVPTRCASRARED
AERQLREARKTREIFGKAAALYAAGKDPTATIERIPPEVRLHLPTPGSAEWPARAAAARRVIRRAVARADRLRKRMGILD
SDRDLQRLFNANQKKAVRQILAPSTKAPRCQLDPAAVEEAYIQTLAKPPPIDPSPPWKNSVQWPRPPTAADDGGSPFSVA
EVRAQLRRLPNGSAPGIDGIPYEAYKRTKLDATLAHVFEVVRLNARLPARWDVARTVLLYKKGDPNDTGNWRPISLQVTI
YKIFTAALSKRLISWAGKHNTFSASQKGFLPAEGCHEHAFVLRSVLDDARRHKQNVYLAWYDLRNAFGSVSHDLIAWCAA
MLGLPRYLRDAIGAIYRHSALFVQVGDQETTGVIPMRCGVKQGCPLSPLLFNLCVEPALRCLRRTTGYKFYGTSITVEGQ
AYADDLLTAAPSAYHAARQVATIEEWANWAGVSFVVQALSLDAPAGKCAALAINFEGGLMHSIDPALKVQGAAIPAMSRN
NVYRYLGVHVGLTDALGQANELLEKASRDARTICASGLEPWQKVVAIKTFILSRLPFFFHNGKIQRGRCQQFDRELRENL
RAALRLPVCTTNAFFHSRVASGGLGILPIAEEQQVYLAAHVFKLLTSPDLSIRAIARHQLAEVTHARHTTPVQDGEASPF
FGWLMRGQEVASTTPSGDVSSIWFAAAGAYSRMGWSVRDALHPTLTVGPGVQFEGRFQRANVIPALRASAFSRHAVEWSA
LRTQGRAAAYQHAVHPATHHWVHNSAGLTTKEYRFAIKCRLGLLPTRAAPHHRNGPTACRACSYARETANHVLGHCPATK
AEVIARHNRICRALAQAAEASWTSVLEDVPIPGVDSPLRPDIYCSRPGQCAIIEVAVSYEDAFNASMEGRAKQKTDKYAG
LAATVEEQLRLQTRHAAFVVGFSGVVLPASVTATATSLDLPPKTWNVLLKRCVAASIKGSYTAWRRFRRSTP
>HERO-2_DR_pol#LINE/R2-Hero 87-3512 [Danio rerio]
RHGKTALGTVWVSTPACVFREREPKQATESPTEIYPQEIPRGGEDEISNRTDQRLMTHANEQTTNKIYVTCICGKLCKNH
WGLKIHQARMKCLEQESKVQRTGPEPGETQEEPGPEATHRAKSLHVPEPQTPSEVVQQRIKWPPASKGSEWLQFDEDVSN
IIQAIAKGDADSRLKTMTTIIFSYALERFGCIEKGKTKPTTPYTMNRRATQIHHLRQELRSLKKLYKKATDEEKQPLAEL
KNILRKKLMILRRAEWHRRRGRERARKRAAFITNPFGFTKQLLGDKRSGRLECSIEEVNRFIEETVSDPLREQELEPNKA
LISPTPPAREFSLRGPSLKEVKEIIKASRSASTPGPSGIPYLVYKRCPGLLLHLWKILKVIWQRGRVAEQWRCAEGVWIP
KEENSKNINQFRIISLLSVEGKVFFSIVSRRLTEFLLENNYIDPSVQKGGIPGAPGCLEHTGVVTQLIREAHENRGDLVV
LWLDLANAYGSIPHKLVELALHRHHVPSKIKDLILDYYNNFKMRVTSGSETSSWHRIGKGIITGCTISVILFALAMNMVV
KSAEVECRGPLTKSGVRQPPIRAYMDDLTITTTTVPGSRWILQGLERLIAWARMSFKPSKSRSMVLKKGKVVDKFHFSIS
GSVIPTITEQPVKSLGKLFDSSLKDSAAIQKSKKELGAWLAKVDKSGLPGRFKAWIYQHSILPRVLWPLLIYAVPMSTVE
SLERKISGFLRKWLGLPRSLTSAALYGTSNTLQLPFSGLTEEFMVVRTREALQYRDSRDGKVSSACIEVRTGRKWNAGKA
VEVAESRLQQKALVGTVATGRAGLGYFPKTLVSQVKGKERHHLLQGEVRASVEEERVSRVVGLRQQGAWTRWNTLQRRIT
WANILQADFQRVRFLVQAVYDVLPSPSNLHVWGKNETPSCLLCSGRGSLEHLLSSCPKALADGRYRWRHDQVLKAIAASL
ASAINTSKNHRAPRKAVHFIKAGEKPRALPQLTTGLLHKASDWQLEVDLGKQLRFPHHIAATRLRPDIIAISEASRQLII
LELTVPWEERIEEANERKRAKYQELVEECRERGWRTYYEPIEIGCRGFAGRSLCKVLSRLGITGVAKKRAIRSASEAAEK
ATRWLWIKRADPWTAVGTQVGT
>Utopia-1_Gav_pol#LINE/R2-NeSL 748..4521[Crocodylidae]
MSGPRQAAADPRPSTDPRRQRDSQSPEPRLTRAASRRRTPDPEDAPRTTAEHPERRRTPPDPRGPSATTAGPERRRPPDP
GGPEDDPPEGLPTLVEEPRTPPTPDPPDGRPRRGCRRGSAHVPPLPPPCEAAVPDLPPAKAVQVAQRHEQTPTALPPAAP
SVLLLPLRHRVRGPEAPEEPPQGMPGPRGREETRHAGEVRRPTTRAAARRPARPAAPPATPPDQTSGDRPTERPAPATPP
RRSAPRDPRPDVTPRPDGPPPGPPGPPDAPDPPRIPEPPGEPEPPGALQLPSVPGSPGAETSAQQRMPTPRQALWLEELS
RATAFEAFEASVARLTEELSAAARPGQPRRGADNGPTTRRDHRPQPQRRPRRQRYDPAAASRIQKLYRANRPKAAREILE
GPSAFCQVPRETLFNYFSRVFNPPAEAAAPRPATVEALTPVPPAEGFEEAFTPREVEARLKRTRDTAPGRDGIRYGLLKK
RDPGCLVLSVLFNRCREFRRTPAAWKRAMTVLIHKKGDPTDPGNWRPIALCSTVAKLYASCLAARITDWAVTGGAVSRSQ
KGFMSTEGCYEHNFTLQMALDNARRTRKQCAVAWLDISNAFGSVPHRRIFGTLRELGLPDGVIDLVRELYHGCTTTVRAT
DGETAEIPIRSGVRQGCPLSPIIFNLAMEPLLRAVAGGPGGLDLYGQKLSVLAYADDLVLLAPDATQLQQMLDVTSEAAR
WMGLRFNVAKCASLHIDGRQKSRVLDSTLTIQGQAMRHLRDGEAYCHLGTPTGHRAKQTPEETINGIVQDAHKLDSSLLA
PWQKIDAANTFLIPRVAFVLRGSAVPKTPLKKADAEIRRLLKKWLHLPLRASNEVLHIPYRQGGANVPRMGDLCDIAVVT
HAFRLLTCPDATVSIIAASALEETARKRIARQPTGRDLATFLSGSLEGEFGRDGGDFASLWSRARNATRRLGKRIGCAWT
WTEECRELGVSLQPAPHADRVTVTPRTRTFLERFLKDAVRNKYAGDLRAKPDQGKVFDVTSKWDASNHFMPSGSFTRFAD
WRFLHRARLNCLPLNGAVRFGHRDKRCRRCGYAAETLPHVLCSCKPHARAWQLRHNAVQDRLVRAIPAAAGEISVNRTVP
GCESQMRPDIVITNEEAKKVVIVDVTIPFENRRQAFTDARARKREKYAPLADTLRGRGYDVTVDALIVGTLGAWDPSNES
VLRACRVSRRYAKLMRCLMVSDTIRWSRDIYVEHITGHRQYSDPTRRAAAGPDPEGTA
>CR1-3_FR_pol#LINE/Rex-Babar 1-2185 Fragment, via tfasty with Rex1_FurC_pol, 1 frameshift. [Takifugu rubripes]
CKHQGCIHPLPPLGRSDHNLVHLSPAPMVNKQPPTKRYVRSWSEETSMALRDCFDTTDWDVLCEPHGEDIDGLTTCVTDY
INFCVENTVPTRKVRCFPNNKPWVTPDLKALLNEKKRVFRSGDKEELRRVQKELRRGIRRGKDSYRRKLEERLKGSNARE
VWRGLKTISGHTKDSGRGPESGGLDRANELNSFFNRFDCAAPPSPTHQSPDLTVLSHHHPPSPPVTPPAPAALSSHHATS
LHPLPDRPSQSNPRPHPPGVTPRLSITADQVRKELRRTKTRKATGPDGINSRLLKDCADQLCGVLLHIFNLSLSLERVPL
LWKTSCVVPVPKTAHAGEPNHFRPVALTSHLMKTMERIVLTHLRQLVDSKMDPLQFAYRPGIGVDDAVIYLLHRSLSHLE
STGSTVRVMFFDFSSAFNTIQPSLLRGKMEGAGVDCHLAAWTTDYLTNRLQYVRLRDCESDVVVCSTGAPQGTVLSPFLF
TLYTSDFSHNSDSCHLQKFSDDTAIVGRVSEGNELEYREVVTNFVAWCELNHLRINASKTKEVVIDFSRKASHTAPVNIQ
GLDIEIAEEYKYLGVHLNNKLDWTHNTDALYKKGQSRLHLLRRLRSFGVCRTLLRTFYDSVVASVIFYAVVCWSCGSSER
DRKRLNKLVRRAGSVLDCSLDSIEEVGERRMLAKLTSIMDTPSHPLHETVGALSSSFSSRLLHPRCKRERYRRSFIPTAV
RLYNMHNS
>YURE_CI_pol#LINE/R2-NeSL 1194-5813 gi|34392547|dbj|BAC82601.1| reverse transcriptase [Ciona intestinalis]
MATSSSSVSSGNVQTEVRCVYHGKGDLLLECPVAHCPSIHPTVATITKHLKKHHTPQFEQITTKNLTITYTCSQCSFSTT
GLTQHHISKHYKTCKGVGAVQEGNKGRFCCPACGTRWALLCKARHHFNNVHFEYDTPPIAAFSGTPYKLKKRKFTIINKA
LTYSCPLPLNQLLCPLWSCSLTILNKPLSSVQQETAHGDGSQGQSYVPTQLRQVLRARCHCGNPPIGKGHWASCQGKRPL
SSPKGGRSSPTPPANLTLHFLNYLPFQLPSQSSSPQSSTLDPTACKARVPIPSFLRGDCEVTFFIIPSVNFYRPYLSYPL
RMFWRNRTSSGHCSLHRVVRGFVRERLVPHPRSKSPARTPLEFLCEFRLAGVFPDPGKVASLRPVPAPLTLCLSPPVAGP
MISCEDHSAPPSVRSSSPIPNSPASVSSVEAHLSDLLDKVSSGELRPLSPTLPSSGFFGPLLPPTPPPRPTPSAEKASPS
GLSYLPCREVKIASIARPSPASQRVGCDADRTGPSLNPNYQQTSPPSTPSFSPIVRPPKFPRSGAKVNSKSKPPGVRPRR
AKPIEPGTESASPVDVDTISSSVQEPCTPENRTPEFFYERKWLVSILNIHEREGSNFFQFNRDLEYWTQLLSGSQKGGRA
KRASYNRGAANQAMKNRDSGRKDFDPRPVAGHSSGGGTELGSRPRYPKGARLRADFWRDMKGTVRKLLDGSNGERRCGIP
LDIIERKFRQVSMPGWIDHRRYAAGASPSLVTQAETDVAITSEEVEAVLSGLNVQSAPGSDGLSYRFWKGLDPSGRLLSC
LFEIVRRHGRIPGAWPTCSVILLCKDAQGDVQDVGNWRPITICRTLYKLYAAVIARRIQTWAKQGGVLSRLQKGFMPVEG
VFEHVFMLDTVLSDAKLRRKNLLAVFLDVRNAFGSVRHECLLKVLRHFDAPHYLVELVRDIYTGATCRVRSSVGETGDIP
CDRGVRQGYPLSGILFNLVTEVLIPGLSAGNDGYRMACLGGKLTQVLAYADDLVVVTENRDQMLRQLGVCEEFGRWAGLA
FNQRKCGLIGWRTLRGGRRVALEDPLLLNGVEIPLLRPGEHYKYLGAMTGVMSVPRTGSQLIKDFRARLQRLFTSFLTPH
QKLIALKRFLLPSLSFHLRVRPIARSELIALDRRVRECLRVAFRLTKPSCQAVFHTPTDMDGLGVPSVCSESSILTIAQG
FKVLTSPDGTVSATASARVKLYAAKFGGLTEAGPSDWARYLSGDDVNGNSTRKPGANLPSGLWTRVRCASRQLGAVWRVC
PENGITVRVRNSVITSRDRRKLIRSFHDCSNQQWKEQWMQHPNQEKTAAAHMAYADANRWVKQPSVMEPHTYFFALRARL
NLLPTRVSRAIYSRDQHPDILCRRCGASVESLPHVLNHCPPNMSIILGRHNLVLQEVLNAVDKTQFKEISVDRTVPEHMS
ETGEALRPDIVARRNDGSVVVVDVACPFDQKANFDEAAKRKLLKYDKLCCNIAASTGKPVECHSIVVGSLGSLAEGLSTS
LRALGITDFARSKLVACHQG
>RandI-5#LINE/R2-Dualen 3-7370 [Chlamydomonas]
NAADRTGPLDSADRLHQRFLAQTGLLPARGTMTTEGEWSYEQTQHGVTTHRSRIDDILMCTTTLTACPSPHEHVSTVAGN
FDHKPVHIKLPADALHLWEAPQPAAPPATTSEDSPRWSRVTLPITKKQLAAAAAHLEDIMVEATADLHNASKGAVQVIDN
ALKQHTKNPTTYPANTMQWDLAHNRIVQQTDVNQLAERLGKALEDGLTCLLEECTLKPPHTGKHHLSRSAARHLKPLWDK
EVELKQTLTNLTAGGAAPDTTTEGEAATIRGQIKDCQAQHRQLVADRAKAQREAAAAALQHTLATRPAHGHKRIFQKEAT
ERGLPAVRNPETGEVVTDPPSILTALDGHFRKLSAPPRGPRTGEYRLSPGATRGYPFELPNATDAFTLERNRHPEAHSML
SSMADPANFDHCIAHLSRNKATGPDGIPNELLRILPHGMKRALHNTLKIMYVKSTIPESWATSDTVLLPKPGDALDIKNK
RPIALANTCYKLYTSMLTLGIGELAGPLQLFSESQEGFRAYCNTERQILNLVHVLEDAALYGKDVYAVYVDYSSAFNTID
QDRLLQIMFDLGLPDDLIRAVRNLYAHATTRIRTEHGCTSAIPIERGTVQGDTLSPVLFILFMEPLVRWLHAGGRGYRYG
CLSPEDNARYHCSAAAYADDLAALTTTLEDLQIQCDKISDYADWASLRVNHTKCAATAIWHNKSRSTPTLDGPTGQATLN
AMHRELTNKLRIGNTTVPYYPPTKPYKYLGVQLTFSLDWKAQVSRVTETVKEKGTAIATSLATPAQRLRMLQQCVHTSIA
YAFAAMPYTKQDIANFDATLAGYAKRCYGLPRSFPTRTTLLPIDEYGLGLGSLLPQYARVANRALVLALNDTGRLGVVTR
ALLPRQHSLAGASLAHHLPADRGRFFTTLQQMTLAREHGIQLFYKGTPYATPTWSIVEALDAAAAARAAAPLPVEHVLPL
AELQLEFSHLVDRNTSRHLISTRELEKLLGASRVRHKHKVALNRLSLALVATAGLDGDQMPPEKHGSPNPLPPTQRVIPP
LEELQALSARNDPRPPGMAPPLTALMTGGPAPQPLTPAPNTTTQMDIEEASPLYHNPPLQYTPTALGQMAPTPAPAADTA
APVAQPEANLRTRPRKTPVMRTPTHPTAHSRRVTKHAAQKARIAENTRTTPDDLLTGDKAAISTAMRLTNGDESLAVGTR
GYETARSVFTALAKDMSRHNHLCKPHPRDPPSFNNRTPVTRTQRPLAPAITTLLTANATMPSTGAVQTYLHQGQPAAAAA
EDPMDVDAAAPEHDQMEVDDSQHDLMEADDRQQASPLRLSRRRGKQTIWKLARERVVKDLVHPPTDDCTNGDAQLTYDLD
NDGQELAAILYRTNQQTATDKEIARKRKAGEDTTNTREPYFAVQWKPSVIPPGLVTAFSRMGYATVTDVRCYKHPLQARP
RATQPHPDGAGTTDADTATAAQPAGILPAHAPPTAPAPGPLETTHAPRAALFSSRSTRLLRQVTWANSNERERDLKHDLE
WEELISEYTNRLAAGPDAPARPTRPPKDRNLTMRQRQGRHDDDPDDQATRARVTRAATTISTVPSDPYHDVSPPGSYAIT
TPTAGRALPREAHVYEPSGRWLGMLTYTRLQTLWESFNRTNNNRTKAFEEAVAALLHRYRRDPGQTDHKTAPQHQTSLPS
ATVRAVVRSLRNTGRGRVKEMFASPLNHTTDADEYWSREAADVVFGAQHDAYSTAWTGLHYAHPPANPDASRQALVWALA
SAETVNNSPEPTLTILVLPKCATYPHTQWLTHPLCRRLATWTNGELDSPGTAGMEPGLGTDVPLQKQRGAILVAVGNTAG
LNAFTQSWKGLRSSLVAGPHAPATVADTHLGSGTLNTSCPHIPRHTSKHAKYLATHLNIATVVTPDEAPATPRLNRTQFQ
RTLPLAHNPEEIVWTDGSVSKTTTENGRELQVAGACAWHKDRVVYVNPNGFGCTNTITRAELAAIRAALEEFGGETSMFA
KKTLTIASDSAASLYLIKRAIDEPRRLHLSKHKALLSSIADLLHARAKRDAHTVFLKVVSHTGLHGNEEADKGAADVATS
TKPADVSELADNNPHAAHWWPATTRTREDGSTTVHYISDLNRGLLKTLDPSSHGGHSKHTLYTTKWAESAPHLDTRASTA
YMTHPGAGHSLRRFIQNARQGGLICPARLALFKLRASDTCALCAPIHQRAGSPPERGNAGHLAGHCAHPQLVGARIAKHN
AAVRMIAECLHHGANGGGYMLMDASSADARPEYCAGTCPPKWMLRNNIPEADRKRMRPDILFIPSLPRSDVGASGPRGLT
TAGRRQHKVYLIEVGYTSDLHHSEKCDQKQAQHTRLADALRDAGWDVVYKKEQIVTLGHGGTVSNTLEPLLRSLGATTTS
AKSCCSRIHMHSVISLRTTSLLYYRLEREMGIVNSRQVGPTGGATAAGPSPRDPG
>GENIE_GT_pol#LINE/R2 1199-4639 [Girardia tigrina]
SSTEVGELVEQSPAPLQSPQFSNNYNNLNINNNLYYSLNTFNQSNNLCCLVNIEFFPTQHLLGDIVNSGCINYMNNYNNF
DNINLYINSNVLSYNNYNHSFLASPYTTNITEHADINMHVQEVNMQQDNNTQHAITQQVSLQATSLQHTLDEMIVQFNTA
VRLKKKHKVAKIFRGHNHRKDLPTLPAREQYKTKPKLAIREVLHRKTTATSSPSENAIKAFFSSYSRPAELFTGQELLES
SWFPVHPEDDFEFRIPGRDQIAKYIKFASKSAAGLDWITYEDIKLGDPSGEILQPIFEYIVQNNICPSEGKASRTIMIPK
PGKSDYSDPSSWRPITITSAVYRLLMKYLTWELYNWILLNQMLSRSQKSLGKFEGCHDHNAMLNMLIQDVRRQTNPSNPI
NKNKRLYIVFLDFTNAFGSVPLDTLMYVPQRFGLGTSALTLIKNLYLDNYTNVTCGESKIENVKLNKGVKQGCPLSMLLF
NIFINIIIRAIEAMPDVHGYPLGDMDIRILAYADDIALISDSHKDLQEMVYKAEYIGRILGLLFNPSKCALMDIPHDKKR
TPPILVNGEMIKCVGKADPYKYLGTFRSWFRKLDIKELLQMMMDETKLITESNLHPHQKIHAYETFIHSQLPFHLRHSRI
PFSDFITNRKTNKTTNNSNDSEKSIQKAYDPESGQLFLNTFALPSGCAKDFFYITKDAGGPQLTSGLDEYLIQSIMYIFR
LLGSEDPTLNSAIKHDLISHLNLKGFVNINFSQAISIFNSNFTDRTDHFSHLSRTEWARLQLARKKLKSTLAIQTNVCLI
NGHLVLTLSLENNVLLIDSKEKGDVKKIHASLMGFLRLAHLIRLQKHGWSKLLFSATTHHEILNKRILNGHVPYKIWYFI
HRARLGLLPTKLFSVSNLCRKCGGKKETMSHALVNCPMMQTLINERHDALEISLVQILSSKFQGTVIRQKTYVNELRPDI
TMESDTQYYLVEVKCPFDTKMSFELRTQQTTDKYNIIIEILEDVHPGKEVRLVTFIVGTLGSWGPQNSDFLRDLGFSKDE
IDQVKTRLMLQNINSSCEQWKRFVQYAPTITPGPIPDAESEDDQGTSDNGPTAATVQGPVIGDEEEELQIYDSGLDESSD
DEPDPDDAELLFTIDIEQYLNSVITD
>GENIE_GT_gag#LINE/R2 15-1199 Not matching other gags yet. [Girardia tigrina]
LQNNNSTPIVDNSSRAQTEHVISNHFVTQDSSNSDSNIIDRDRNLVDLDASITSPTIIQPEDSKISEDEDFILVNRKKSK
NKKKSKKTTENKNEIPIQKSKDKKKKSKINTEKLTENITTSEIPLEIAPSIPLPSASTSGSQQPANPPEDATLSDTDLFL
TQDDPDSLILSGSTQPTFVDLNPSQQSELPSNTDSQRFEAGETPKIITSYRDDLFYSTVLHYNSDTGYGISVDNGEQRFR
ILARNLVRKTKDKFPSLYAGQVIRHTVFFNHFNQAYYANNITDSKGNLIEFSDDKPFQSIPTDPKTELEQIRRERQHLVD
RALRHNQLRETYILNKLNNNNGGGGEHLKRKKIKVNTDDVSSNDGDRKHRRQEETSDNGAAIPAQSNNQITPLN
>LIN1_SM_pol#LINE/R2 3009-6476 (probably pro-pol) [Schmidtea mediterranea]
WESILKKAIALTLEKQKRNINNSINIKPKFQKSCVSFLLSKWFKSNTNILVLSPDLTINLIAQNNNYIIENVNFRQFKDV
QHVISIIPNENYWCLLLYSTRRMTCNIFDFRKTDISDRLTEIGGNFTDYLNSFFLSMKIKFQINHGILHRCFISDDPTFH
ATAFIVFLEKLILDRDFQHDKIYKLLDDINTKECVEISLNLNLINGKITDSILIKYFNNLSLSTDFVLLGFTMCTAILDD
CTHYLNEHLNYKCLQNAKVVFAIFAPPKSRETLMVIDYNTDEHYFLDPTTLDVSLNYTFICKVLVTKINEIRNSRGCAIR
AGKCPHDVRGSGLLSKILICAFINNYAHDMSLENINLREIARIINSVLPIVSEINNKDKEKILTKAKETIKFDLQQRKNK
VFELIISFENADVNQIVESIIRQIPHLNNFTEIKSHEPYLGSKQNSNIISKYKSRSEFLINMKLTFYKIINDLPVTVRPE
IQDILNQFSHEDPVSNSWNKILKDCRSTTNVLNLVDILPFEVIYELKRADNTSPGIDGIQYKDLALLDPEGILLSFLFNK
IISSKIIPTSWKTFKTILIPKPDKTDNYDKVSSWRPIALLSVIYKVFASILTTRLTSWVICNDILHIGQKGGSVHEGCVE
HNSILSSALEHSKYSKNSPLAIAWLDIKDAFGSVPHDYLWSVLKTIGVSEEFITIVKLLYTDTQSFYSCGPIVTPNLSIK
KGVKQGCPLSMILFSIAINPVLEAISRSCIEPFMIGDSPVQVLAYADDIALVANNVENLQKIVDVAVEAATEIGFEYRPE
KCGYMQLPRVNINGEILINEKEIKKLLSKEFYQYLGVPVGEDNDQSPYAILDKVVSDTNKIADSGLFGWQKLKAYKIFIH
SRLTFAFRTREIKTMALSASQGNTNSCGNNSSKLRGHLRRILNLPHNSETVYLYNSTENGGASCVDLLDEYHTQTIVHFF
RLFTSNCDYSRKVNIDSLKFVTGPRLGIKEPTLQQSFDWINGAETKLNHGGRKTRFQRARTSIIYFKREHSISVSFHIVK
EQVFLYLITKSHGTFILTTKFRKAISKIFHSALYDSYMQKWQLSNKSDMIAAAIKLSPQINKAIFKSKLGEFAWNFIHRA
RTNTLNINAKPNRKGDSRLCRRCEKEDETMSHALQ
>R2-2_PM#LINE/R2 1-2983 via tfasty with R2Dr_pol, 3 frameshifts. Fragment. [Petromyzon marinus]
SLPMVCECCQARFATLSGLSQHKRHAHPVTRNEERIKDGIKGTSQRGVHRSCWSLKEVEQLALLELQFQGKKNINKIIAE
ALGTKTNKQVSDKRRDLSKKTGAPMSDSLHFSSRPLETLSPPPNVTTGTSSILAQAAERLTNENSGTLEKPAMEAIKAWL
NGEGQHDALVETATALMLCPMRLVKNKGKRSKPENDIIKPRILPTRSWMKKRAEKRGSFMKHQKLFFKNRSLLASLVLDG
TERHECRIPNADVYRFYCEKWEKVLPFNGLGQFKSSGVANNEYFEPLISVEEVQTAIRAIKPTSAAGPDGLTRAAICAAD
PEGRTLTALFNAWMITGIIPKELKKNRTILIPKVMDDEKLKELGNWRPITIGSMILRLFSRIMTARLARACPLNPRQRGF
IAASGCSENLKVLQDLMRHAKKLHRPLAVMFIDIAKAFDSVSHAHILWVLRHKKVDEHVVGIIQNAYDRCTTSFKSNGES
TREISIRVGVKQGDPMSPLLFNLAMDPLICTLESHGVGYSIDTDHVTALAFADDLVLVSESWVGMAANLAILESFCGLSG
LEVQARKCQGFMISPTKDSYTVNNCDPWTIKNKDVHMIQPDESTKYLGLKICPWTGIIRSDLHVQLKTRWISKIDEAPLK
PTQKVELLNAYALPRLLYPADHSDCKQSTLRVLDQEIIKAVKGWLHLPASTCDGLLYARARDGGLAILKLENAIPSVQVR
RLQRIANSSDAIARNIASSQGVEEEYRSLWVRAGGDSEAIPTFFLRGSESKEPVYPRPCDWRKRESRRRCEKPVQGRGIV
NFAQDRISNAWLGPRCGFKQCFFIAALQLRANIYPTRESINRGRDGASRSCRKCSARLESLSHILGQCPAVQNSRIARRN
KISDILADEAARLGWWVYKEPRFTSEAGELRKPALVFAKGEEALVIDVTVRFELSRKTSSEAASHQVAYYTPPCDQVKVL
TKASNVTFFGFQVGARGKWPLENNEVLTSLGLTK
>LIN5_SM_gag#LINE/R2 8-2929 [Schmidtea mediterranea]
MPKKHSNSTGQKSEADDMEPMNCNSNLISEMNRLFQSFINQVMEKNTVQNNNRKSRSKSISRPNSKDNQKSKIIPKNKNN
KKGFKIENHLRNDKNFNDLKECFYNHEKFYKNLETCDLNELIFKIFLLKVKINKFEFKISEFKNLKIEKKENKMMKNIED
KTTKSKNHVNFKNLKKNENDENKTKINPENQNSEILNKNNEDKTKNLKSFKDVLINGKNKELKKNKKDLNNEKVKNNELT
QKNLSKIINLEKIRKWTDDFFNNLTWKFHKNIDVPETMETNTNLFNYLLIKFQLMQTKNLTPSRTIIEIKEEVSENDIKE
MIDKYFNLFNNEIFLNFKNRFENLNYESFIKDFLYIIHLKIKTFLNLFKYLNQSNLINNNAKKIFRAHQARETNGRSSST
FGRLAKNHVIKEGTVTTLHSSSTCGRLTDHPDTDQWEPATTRNPPSPNLLPINQIVKNISSIQKPDTTHWIRSTNSFVNN
IKSIKIKPKLTSKNENHFGPLINFSEDINEETKPLKIKTTSIEIKIDLEDTPKHITEERINKTSTITNVDLDAPITKISA
QTSSNTNDSISYSPLPTAEQLPKTPISPISKTITTEICDITESPYPIPLINVDLNKILDNIETNMESDVFSSISDYESEI
DNDNNIKTNNARESDIDLFSQSICENNQINIMQKNNQTRSNTPENAFNIMTKASEKNTIKKILNVKKKVIAALPPIPPMK
TKPDSTLNCQAEDKENLIVYRFGSKGKFSCNTTHKSQECGEIAVYDYDALVEHAESNHIIQFNEQSYIDCHSCHPKKGKD
SNTPVPVKYADFFNHAEAHGHIITTAAADTMKTYLRLTKENQLYCSHRNSNRKSKCNEIFNLDSDLSDIIEHMKSHPKYS
FDSTKSIQCYCGIWKPFTNLIDHIKTVHLKEFINSISDSKTIKMDINTNITPINLAMILGTDETQNIPDEEAIKPRSLPE
NLAFNRDIEKELS
>Proto2-1_BF_gag#LINE/Proto2 248-1501  [Branchiostoma floridae]
MPRCEDCREAGAQPCQGDLVLCQRCSDKRFPPSGSGSEAVCKDVIINDLLCFTVNKMDTLPFDIITKLCTETYMDEEIES
AKRLVFDTCKPDERYIKRKGGDKSTANMEDIQRVLHSTAPPSLPTFVSATLHLPAVSLEHVDISVCMQELQIMRQEMKLI
RDCSIDSVRVQTELVALRKEIWELKNRPSSAPPAPSSSAPPAPSSSAPPASSTSAPPVVSTSAPPAASTLAWPKESYADA
VSDTCPSETIPKSLHAGLSGRQVERAPTTKSSQASRRRGYSSDSRALARPQSTSAGGHSDLDSEGFRLVQRKKKRSRAVV
GTAVSSSLSAVKSRPAEIFVTRLEPDTLTQDVERYLTDNLSQKCAVSCSKLTTKYDGYSSFRVSVDYNALSEVLSPSFWP
CGILVRRFHSRRRSSTS
>Sm1_pol#LINE/Penelope 2766-5036 [Selaginella moellendorffii]
PGKRTAAERGYWDSSHPFRCIGFFFEGDSAPDISSPAWFPRKECWTRWPSPFWPQQLPTGAPTLHDTGTGHLRSPATSRT
FTDQRQQGSSHTQPSTSPWTEPDPCQPQEQDPSTTTPLSLALTFANRQSPREGNPQDYWSPLTSPSKAILDIAGQRPVSK
FENRVETGAVHNLSSRALSAAEIRLLSLGLRYIPNPAPLRAPQIVESSDALCRAVRLRHLFKDDDSALPEFRVPNPSFEP
PPAPAYVERRLAHVRGSLLHRLEGAHKPRSFAHGWKKRALHSLATDTSIVIKPADKNLGAVVLDRDWYTKEALRQLNDPL
VYVKVPSVPSKSLQERLAELITKYRSCSWLDNSTQQFLLHQPAVPRQACMMYFLPKIHKQPIKGRPIASYIGTLWEPLAR
WLHRQLYDILLKQPTFLSDSRTLLQDLLHLQLPRDCWLFTFDVESLYPSIPTREGLQRLRDFVFAEYGNTTRSRFLMAAA
ALVLEHNYVEFDGNIYQQIRGTAMGSNFAVVYACLFLCSLEAEYKHATNDWPFYLRRYIDDGVGIWTGTRAGLERWLRGY
GTLCPSIKITSVISLEELDILDIHFFKGPRFEETGCLDSSTFQKPLNAYQYLPWTSVHPRHQKVAFIRSELRRYLLREST
ADGFHAMRTRFYHRLRARGYPTSFLHHCFSGISYDQRHQALLARSRRSSDACRRAPLAFKLPYTLHSAQLGLGDILNPKQ
VMDEAPTDTLPRVITCWRRSPNLGSFLVRAK
>22004038_Api_pol#LINE/R1 gi|22004038|dbj|BAC06469.1| reverse transcriptase [Acyrthosiphon pisum]
TGTLQVGLGWQAAGETAVVKARPAPRPHGPRSPNQYGFRCGRSTEDATERLLEMVHGAALGAVQHRDICVAVSLDVRNAF
NSAPWPMIDAALRGKPVPPRLISMIRSYLKDRSILVGELLLRRDMYVW
>NotoAg1_gag#LINE/R1 552-1841 gi|28569887|dbj|BAC57921.1| gag-like protein [Anopheles gambiae]
MREAIRQLTNSLAEANARNERINEELTQMRILMTKQQEYTERRELIAREEMEKMRAAHERDRTALNKLLMQGAGTSSHRA
AATPTTPTPQPRRMQQHQEKQRQPPQQQHQQIGPSTSAAPPQLLVSGASFDPEGDDGQGSFAEVVRHKWGRNTGKPRGYQ
QQQSQSHRQVVIGTQQECLQPEQQHQRQQQHTVRRHNVDKVEVIPGENQTWETVYQMVKDAIKFDPAHKDLADHVVIGRR
THAARLRIQLSCTADSTLMLQEVQQIIGNAGIARVITEMGEILITHIDPLASEEDLKEAVDRKLQASAGVTKVSMWQLSD
GTKRARVRLPAKAAKQLVGQKLTVSCCISNIKEAPAINLQQQRCYRCLERGHIARECRSPVDRQKACIRCGAEGHLAKDC
NAEVKCAVCSGPHRVGHSDCVRPMLRCPH
>KagaAg1_pol#LINE/R1 gi|28569891|dbj|BAC57924.1| reverse transcriptase Ag-R1-6_pol over 90% identical and with errors. [Anopheles gambiae]
MDILQININKCRIAQDLALNTMRVEKADVLLLSELYAVPQNNGNWVVDRDKSVAIVTSGVRYPIQRIRSVTVLGIVVADV
NGITIVYYYVKPNVGVRQFEEIMERIDILIRGHPRVLLAGDFNAWHTAWGSERTKPKGIALLQLVNGLGLEVLNIGTSHT
FRGCGSARPSRIDVAFASPSICRPDLAANSATCWRILSRYSYSDHVYIRYTVGEQPPREQQTGTARRQRTAVRLAGTRWN
TRQFDPTLFESALRSTRFEDRATHAKSRIESLTRACDETMSRVFPSQDHTGRPAYWCTPAIEELENECRIAEQRQLASPT
DPDISALDRQARHALKTAIRASKKQFFDRMLQALHDDETGQCIRKVLYRLQPSRTAQDRDPVVLKSVVSTMFSDHSPAEW
PTEDKHEIGNRVPLREVTDLELQIIASGMQPRKAPGLDGVPNAALASAIKNYPGSFRQVYQECLDRSCFPEQWKKQRLVL
LPKPGKPPGDPSSFRPICLLNNAGKTFERLLLDRLNEHLEDSDNPQLSEYQYGFRLGRSTLLAIQQVVNAARRAMSFGRT
NNRDRRCLMVVALDVRNAFNTASWQCIAEALRDKGVPLQLCNILQDYFTDRELTYDTTDGPVTRRVSAGCPQGSMLGPRL
WNVGYDGVLRLELPEGAQAVGFVDDLAIVAAGTTPEHAAAVAEEAVERVHAWMRHHLQLAPEKTECVMISSLRRGHPEIP
IRVGGLEIRSKQAIRYLGVMIHDHFLWRPHVTMAVEKANRVVKVVTNVMRNHSGPRVAKRRLLAGVSEAIIRYGAPIWAE
ATDRQWCQRMLASFQRPLAQRVVCGFRSISYSVAVLMPRLIPHPLLIKEDARCHQRYLADPEASRAVIRREERAVTLEVW
QREWDANASNPGASRYARWAHRLIPEVHSWMAQKRGEVDFLLAQILSGHRFFREFLHVCGFAPSPECPACTGSVESVAHV
LFYCPRFAEVRRDLLEMGVDGSITGENLGQMLLKSSDSWTRIQEAARRITTVLQLRWREDKAALNALANSTSAEAAVNAE
QMQDDPAAARRAARNRQARARRAQERAEQLGDVELVSAFRQLYGPAASDAIASIPAAVPLLLEVTTTVDHTPVTAAVAVA
EAATATSPAAEVAPRIAEVAPFPATNGMAPPLSPILSPRRRRQAQRQARAHMLPDRQQNGRAVSSAEELERRRREMERTR
RQRQRRARDSQAITIHFSPLPSDEIQERRSTLTAEEEAAISMQATSGR
>Poseidon_Hyd_pol#LINE/Penelope 23-2503 [Hydra magnipapillata]
MSLKFYITSSYGGKLYKNTVQLQVEKTKNAASKNQWIFLERCIKNNIIPKSFHIHCPVKTKNGYNLMVEYRKKLLIIAKN
DAKKRFYQSKRRVIELSNAIKNIMKPEDMLNIERITNKSREIKFEQTKQHLIRKFNFLINSKKNDSLKKFNPLNIISIPP
TNLIKNPILNLSNISISHEQENLLSLGPQFIPTQNKIPFIDIITSTEECALNIEKNVNVERAEFLRQNVSKTLTKYLRVK
IDSNISKNQRLAINELKNSTNIKLYPFDKGNGFAILNSDSAIQKIKEQLGNCAISAVDPTQKFLSLIQRTLSKLKKDKKL
DKKTYGKIYPSDAIPPRLYGCIKAHKSEKGYPMRIIVSTIGTPPHKLSQHLVEIIQPTLNKNECRVKNSSSFVSTAKEWF
INDEVQVSFDVINLYPSVPLDKATITIIDMLNKDRDDLIQRTKLSLVDIHKLIDLCISKCYFLWEDKIYILKNSGPIGLS
IMVVLSEAYLQHIESNAIQQALNVNIAPKTYKRYVDDSHARFTNIDDANSFLTLLNSQDKSIQYTCEYENAQHQLNFLDV
CISTNHSLHKYEFSIHRKDAITNVLIKPKSSISPNIAGIFKGFLARAYKICSEHNIQDEINFLIKIFTENGHSYKQYSDI
AKNYKYSTNPSCSQKFDTKNLVILPWVPKLGLVLRREFRKVGVKTVFRFGNPLINILCRNKSKLPPNSHPGVYQLNCTCG
AYYIGETRKKISTRIQEHKSNVTKANWETSGIVEHSQHCNGKINWENPKTLSIISNNYTRKIREAIEIQRVQCSKPKENV
LN
>Penelope1_XT_pol#LINE/Penelope 52-2430  [Xenopus (silurana) tropicalis]
FGHDIGGQPYLQTFFRNKNQIPEGIRRRKRTRRGGRKCKRETPQGEENIIFNLSKHILTQGETSLLSKGLSFVPSTIPNT
FDTFVDIYRFQRKLKLKEHFRNSQDTARPRFRAKSNFEPPNTPAAVRTFGKVLSLEAKTMANNTKSHPNLSLAERQAIKT
IKADRDLVIRPADKGGSIVLLDYSYYREELLGQLADTGTYSALPGDPTYKFKKELDGILFSALNAGWLTEDSTQYMITEH
PRIPIIYTLPKVHKSLSSPPGRPIISAVGSLYQPVSTFIDSYLQPIVKSMLSYTRDSTHVIQRLRDLGDIPSDSILVTMD
VKSLYTIIPHEHGINAIRRALAMSPLANTPTEFLLCLLELTLTRNYFRFENSYYLQVSGTAMGSALAPSYANLYMQDFET
KYIFPLLGEQILTYFRYIDDLFMIWLDGEENMLRFHQELNDLDSPIKLTLNYHHDNVDFLDLNIFKTDSGLGTRLFRKPT
DRNSILHASSHHPPATIRGIPFSQFIRVIRNNSSPDTARTQLKEMYDRFLARGYTKNLLDPQLQRALLQTQEGLLQKTNR
NKTQATPLIFTTTYNFTSPHLSKSIQNNWPMIGQDETLSLYQAKKPLMGYKRNSSLRNLLVKTDFKGHSTPSTNWLSSQR
KLGCYKCPDCVTCRCLLTGPNFPHPHTGKRFKINHRLTCTSIYVIYIISCPCGLYYVGKTITTLRERIGNHRSAVSRALK
EGKADQPVARHFLKMKHSLPTFRCMAIDFQPPLSRGGNRDQALLQRESRWIHRLDCVTPRGLNETLPLGCFI
>Penelope1_Dw_pol#LINE/Penelope 32-2533 [Drosophila willistoni]
MTTTDGPPIATQTIGFAEIKLNYSNTKTTINRHQTTSKKLVRLKSSLKFLLKCRKSKLIPNFIKNTTRCDNIFKFDNNTF
PDINKTLDRYTYFFHTKILNLLIKHKHNTLIRINNKLAETTKTLGKQLDEQSMSAFLEREQNAVKRLTKTLREHHEMKHE
KLNNKRNFALLNNNRTDDWFVNETELEFPPDIKSLLSKGPKFALPIEHEKLPLIKYIADGEEIVQTIKEKEKQEAARTAF
SLMVKEHRAMKYINATDRAILNITQRTYKFLKQHDDILILTSDKGNKTVAMKKIDYDHRMMDILSDLNTYRILRKDPTTR
LQTKNNNLVDKLHKMGVISKIEKNRMTTTTAISPRIYGLPKIHKEGTPLRPICSSIGSPSYGLCKYIIQILRNITLDSKY
NIKNATEFKQRINNTYICDDEQLISFDVVSLFPSIPTDLALDTIRNKWTKIQEYTKIPKALFMEIVKFCIQENRYFTYKD
QTFIQLKGMPMGSPASPVIADIVMENLLDTTMDKLTRPPRLLTKYVDDIFSIIHQDDIDKTLDTLNSFDRNIKFTMELED
NGKLAYLDSMVIRRGNELKLKWYRKPTASGRIINFNSKHPKTMIINTARSCIQRMLNISDKIYHEETKMEIINILKDNDF
PDNVIRTLFKKHKSTIDKTKNEKTYISVTYVPKLSERLSHSDCYDKDGIKIAHKPDNTLKHVFNKTKSKIEMTNRSNVIY
KIPCNGQGNIPCNKIYIGTTKSKLKTRISQHKSDYKMRHYTDTPKTALMTHCATSGHAPNFEETTILDEERHYNKRFTME
MLHIINTPSATRLNFKTDTDNCAHIYRHLLDKN
>Penelope-3_ADi#LINE/Penelope 104-2154  [Acropora digitifera]
MDQVXFDYSTKNIAIPPRNSYLKSLIEKVESAIKRMRWKAFFFDRNDQDNKEATNNNNFGFKSRKCPPQNSELDKFEADL
LDMVHNIKFRNVNNKFQNKLNEDISKIKKSTKAFIPADKTSNFYKLDKTQHDKLLRDSITTTYKKASTDAANIIDSQAKS
IAQELNIDDRTEQIAKQQAFITLKDHKDNFANHPTCRLINPAKSELGKVSKQILDNINSTIRKTTKLNQWKNTSDVTNWF
TSIPDMQKHSFVSFDIDSFYPSITESLLSKAISFAKNYTTIRDKDIDIIMHCRKSLLFDKETAWTKKNHSDMFDVTMGSF
DGAEVCELIGLFLLNNLSEKYGKNNVGLYRDDGLVLLRNANGPQSERTRKDITREFKKQGLNISINTNLKICNFLDVTLN
LSDGTYYPYRKPNNETLYIDSNSNHPPTIIKHLPAAIGRRISDISSSKELFNQAKPHYESALKQGGHDEKLMXTERKKPA
THTAQNSRKNRQRNIIWFNPPYSMNIQTNIGREFLNLVDKHFPKNHRYNKIFNKNNIKVSYSCTDNLQTIIKKHNRKILE
TSKTPSTENNCNCRKKNDCPLKNNCLTSSVVYNANVTTESDTIGKNYIGLTEGTFKQRYTQHKLSFRNRNYSNSTELSKH
IWTLKDSNTNFTINWSILATAPAYSNKSKRCHLCLTEKLYLIRA
>Penelope_Odi_pol#LINE/Penelope gi|49035804|gb|AAT48673.1| pol protein [Oikopleura dioica]
MDNRRHLETRELIRNGEKLHRNKEHLHFLTKCHEAKTPPPYTSVPKQLLRTTNWSRDQLLSHRLKIIDKDIQATQDRICR
LQTTFNTSLSKLQQSISSSAFLICKKHIFSKIATNQAPIDKKRTLKLKTLLSSSTAHKSPTPIVALTNVTIPQDLLNLLE
YGIDLPIGGSPNDYKILTSLEKLTKNWTAYAEENNIDPFTIDEAKSYLKVNFHLLRKCYNPQNRQKLLTTFLDQNPEVRF
IKIDKSKNLELISHKDYSLKLNKQFNNAHFEKLPRNPLTLDIKYFYTFLRKMEPYISKSTWHQITPNYALKAAYGIIKRH
KPNHPLRPIVSSKNSITSGIESYFVKILNKLLPKIKYSFKSTQDFKKKFLIHRAKFNPKTDWIISFDVESMYPSIPLDRI
IPKIVDIIYSDPKNFFESETRDDVECEIMPRTIFEEIFTKTLRHFTAFSTESSFFRQKQGVAMGSQMSGIIANITMSLLE
QDIIDNEIVNKNLKFYGRYVDDIICIIKKSEVPRINHLINNWDKNMNFTIEFAKNHSLTYLDTRIYFDQNTKFLELKQFQ
KPSKTDTLQNFEEAVSPLSQKIGLLSGEIYRANNTTTTPENLDHALKSLVKKFTANSYPVKLVKSKIKNIQDANFIPPEK
DPNITHRFHLSLEYTSPRVNKIAKTIANMIRKITPSYKVVLAFKTLRLGQIITSRLKRKIEYNEKSGICYKFLCSCNKSY
IGETLRTFHLRRLEHTRLRSNTAIKRHFSNCPIFQNEYENHINSPEVTSEISEGNFAKTKFSILQSNLSQYTNRTLTESF
LITLFKPTINEQTDYRKEICFL
>Penelope-8_XT_gag#LINE/Penelope 64-1074 [Xenopus (Silurana) tropicalis]
MVDLNSRRSFRLKILQDCENHTQENTTVEGERFDFENCWFKYERFLEKEIKCWWEITSLEKYIKHKIIPRGLRINKRPAF
EDGSLDFKRRWDEILNQSSIQLMELLIKEKQNKLRQLEEDIKQQKEKMMGMEKLPIYQDSVRELDTNLNTIDKEIADRKF
RKFERDRGDYTNGNIYDWHQSRVKHTRENESYKTNKHRFPRMEKETKWSKTKTNQLPNMKVLNIKQSRDKKDIGNIDRIG
GVEKGEKRLGTPLSNSNTNRFAPLTEKPIGSLRHSPTDAQSTPFPEKKKTPRREYPRDAWDARPKFGPQPKRMRRWEENL
SLNLEERGPEKRPNYGN
>R1-1_DK_gag#LINE/R1 199-1725  [Drosophila kikkawai]
MEEENPFVGRXALAXXPXAPRDEEEAAAFGRSSKLSRXPXXHEXQEGGRGXGXTPPPKRLRDPASPAGSPRTTPAKKSKA
SEEAACLQDLQEMGXLLQEVSXRMMDKSTRHITVPLRXMIARVXTLHSSILVASRAAAAGVSDRQESRVASNLCXKCAQX
TRSADKEQQTVXAWKKEASVQTEPWRRLSQTDAPGLPAPVLAPPPXRLAQQKSAKAPKKPRAXPPPAAHGAXXQXXXARK
PESQANXENDWEVVARKPRTARRTRPDAVIVHASGKSYSEVLAMVTRREDKQLSDLGRCVXKVRRTNNGNLLLEVAKGSA
ESATTMRESIEKVLGDXASVRATTEDSKVLVLEVRNIDPIATKQEVCAALAGQFNFEAERVKVRSMRRSFAETQTAIVSL
PVSLAKAVLHRGEVRIGWTICRIRERLGPVRCFRCLEPGHIAIHCKGPVDRSGCCINCGEPGHKAASCNKEPSCFICSAA
GRKETRHKAGARGCPASNSGYANPKPACS
>R1-4_DPer_pol#LINE/R1 801-4087 via tfasty with LINER1_pol, 1 frameshift. [Drosophila persimilis]
MVGKLKVGWTSCRIRERTAQRRCYRCLEFGHLAIRCKSAVDRTGCCLRCGVNGHKAATCQSDPRCFICTANNSNETNHYA
GSRRCPAARSVPTPIMKVMQLNLNHCAAAQDLLSQTVRELAIDLAILSEPYQTRESPGFILDATKKAAIWLCGATPLQLS
LSRRCAGFVRAKVGGVWIYSVYLAPSLTLSEFAGTLDNLAADARGRHPVAIGGDFNAWAEEWGSVATNARGRALLEIIAP
LDIALLNEGNQHTFSRAGIGSVIDLTFVSSSLFNSSGWSISNIYTGSDHRAIIWDTGQQTSSVETAAPRWRCYRAETLNT
ALFMQLMSNLTANGNAECMANHVMEHLEAACTATMAQRKHYGRHHQPVFWWNEDIAALRRECNQARRRYQRSRGSTAFPQ
WQSTFRDCRRALKAAIRDSKRQCFLKLCDSAEQDPWGRAYKLVTNKLCAKRQAPPSDPDTTRSIVEELFPHRADHIGDVR
CLTLQPHSQAHIEEVSLEEVERAARSISPNKAPGPDSIPNRALLLALSTRPDIFAKLLNQCLREGVFPVRWKIQKLVLIP
KPGKPPGTASSYRPICLIDTAGKLLEKVVCARLERSIAEAGDLSPHQYGFRKARSTIDAVRKVVDIASGAIAGTRWKGGG
KEYCLVVTLDIKNAFNTARWSCILRALESFDTPRYLQRMVQSYFERRLLLYDTQAGTEEYEVSAGVPQGSVLGPTLWNAM
YDGILRLSLPHGVHMVGFADDVAVLVVAKDLSVVETTCNQTIARIQQWLDLVGLELAPHKTEAVLVSSRKKVETANISVA
GTLVSSKRAIKYLGVLVDTRLCFREHLAYMGTKAATTNGALSRLMLNTRGPKQWRRQLLTSVTRSVMLYAAPIWAKALRT
ASYARGLAATHRLSSIRITSAFRTVSDEAAHVIAGIAPLEFLAEERSTYYQETHGRGMDAAAKRQVRMACKQESLRRWQQ
RWDTTTKGRWTHQLIPSIDAWVSRKHGQVNFYLTQLLSGHGCFRSYLHRFGHADSAECSWCGHYVEEDAEHAIFSCGRFA
AQRQRLEEALGGAVVKQSLVPCMLLSPENWEATSCFAATIMRELRAVEHQTRVQLX
>R1-4_AP_gag#LINE/R1 618-1997  [Acyrthosiphon pisum]
MSTHSTMDEDEGLQDAQQGTSQPQRTQRSPNTPGSSPQHKKKRGSADPVPIAREAIKWIRYTLEIASTKKTNITAETQRS
LFAKLEALEGSIHDMVIANLTLQSQLEESHRGAEICMSACAAQFGTELRLREAAHEQTLEAVVARYAAREVAREEDAARV
GNTAQQPVEHEEHTFAQVTEHGRRRNRGDRPPAVRAAERSKSRTAKRTKLLAESRNEEHRPAFIIQSIDGAKASDTSTGI
WKKVMSKKVMPRCQTITTKQGKVIIKPLNKETADVLKSLSLESDELQEEPLMWPRFIVRGVPSCMPESTIQEAILDQNPE
LGIEPGCIDRVFKPVFKRGPRDREDTNWVMEVNPPYYENVRKVEHLYIGFTRCRIAEYDEVTQCHVCLRHGHPAAKCNEK
QPTCAHCGRKGHLADVCPAAEAEPSCANCHGKHNARERSCSARTNHLVGRARRTNYGKTQ
>R1-4B_DK_pol#LINE/R1 2276-5200  [Drosophila kikkawai]
MVKFLQLNLNHCRAAQDLLSQTVTELKTDIAILSEPYRAKPDGVWQQSTDGGAAIWSCGQPAGHMTQRASRPGYTRAKLH
EVTVYSCYLAPSMHIDAFRDVVLEIAQDARGRSPVLIAGDFNAWSTAWGSSRTTQRGTILLDALATLNVCLPNDGNRCTY
SKAGRESVIDLTFASPELTRNXQWEVTDLLTYSDHAAITFKTMRXQQRLPDRQTAYRVHTLNVEVLLASMDCNAIIGDAN
SCADGLSARIKAACDAAMESSTRGCGRRPVPWWNQEIATARSECLSARRRCQRNRGRPLQGMYESIYRERKKALKVAIRA
SKNRCFQDLCDAADQEPFGSAYKMVMGKLIRQPTPTSHEQLGAIVTTLFPAQPPLVLPNVTVGEPIPIDEEEVLSALTSC
KASKAPGPDGIPNAALLAIVKSHPKLFAEVYNNCIAERTFPTAWKQQRLVLVPKPGKLDDDPSSYRPLCMLNSLGKIFER
IICSRLEAEIEERGALSSHQHGFRKKRSTIDAIREVTQLAENAIEGERWQGGTKKYCLVCTLDVKNAFNSANWSRVLQAL
QRGGISGYLVQLIADYFKDRVLQYKSDAGNQEHQVTGGVPQGSVLGPILWNVMYDGVLRLNLPEGCSVVGFADDIALVTV
EKHLADVSTKCSLAIDMLMSWLADNGLSLAEHKTEAVLISSRKAVEKVNFRVGSTTIESCPAVKYLGVQIDHRLNYKSHL
EYVAAKASKATGAISRMMANTRGPRQHSRRLIATVVTSTILYAAPIWAEAMSTASYSRQCKTVYRRCALRISSCFCTVSE
EAALVVAGTIPIDLLAAERRTGNSGSGTQRSRTISLWQTRWDSASTGRWTYRLIPELEPWLYRRHGQMDFYTTQLITGHG
CFKAYLHRFKHEADPFCDYCGSGVVEDAEHAFFSCSLFSADRAALEAATSCLTPENIIGCMLETPSKWEAVTNMAATVLR
ELRRREKIRRMDGER
>R1-6_DPer_gag#LINE/R1 591-1883  [Drosophila persimilis]
MSKNNTPITTNDSEGFNKSKKMARTPTGERTDAPLPALPGPEQHQKAQGSTALRDLGREITQLVEMLEDGKRRSIHQPMR
DSIESIRVLYELVAIQLHDEGAKAVIRTHQSSQTSPIFRPLPEPKRKQAAGAPTPRTKRTKAAVEVQTTPGVAVEKDAHA
ERERKEPEETPFLTVTNRRRRKRPQKPTGALADKTRPDAIVIATKGEKTYAEILRKVRTDETLRGLGDAVARIRRTQKGE
LLLQLNKSGEETETFKSLVANTLKEHAEVRSLSHRVTVECKDLDEITTTEDICEALRSQVELAELSADDIQLRKAYGGTQ
TATIRLPAESAQKALKIGVLKVGWVRCRLRERISVTKCFRCLEFGHMARQCSSKVDRSKLCRRCGKENHLAKDCSLEPQC
MLCKGTSADWKHVAGSGRCPLFRNALTKRSA
>R1-5_DPer_pol#LINE/R1 2101-5040  [Drosophila persimilis]
MVKLLQLNLNHCRAAQDLLAQTVLEQKIDIALLSEPYGKKHEGVWQQSSDGGAAIWSCGPQPGQLTHRASRVGYVRAKHS
GTFVYSCYIAPRFTQQEYEAIISNIANDARGKSPVLIAGDFNAWATTWGSAKNTPRGTSLLDEFASLNVCLLNTGTTPTF
SKAGRESIIDLTFASPELARHAKWQVLSAYTHSDHLAVMTETFAPRNTTRIQRALQAGYKEESLSRAALLSAAENLSAAG
DAEASALAVYRTVKAACDAAMKKRKIGGSRHRPVPWWNEHIAKARRECCAARRAYQRARGSAQFGRNGAAFKAKRKELKE
AIRSSKLKCFKELCDAADAEPFGGAYKLVMGRLNRQPMPKDPVHMREIVGTLFPRQPPLQEEARVEGASLRDTTTIITAR
EVLEATGKLKIGKAAGPDGVPNAALKCIIRAHPEAFATMYTQCLAERTVPRAWKRQRLVLIPKPGKELNDPSSYRPLCML
DTMGKIFERMVCNRLEAELAERRGLSDLQFGFRKQRSTTDAIEMVTNLAREAMAGTRWAGGDKKYCLVCTLDVRNAFNSA
SWKSILEALTRRGISEQITRTLRSYFTDRVLIYDTEEGAEHHQITGGVPQGSVLGPILWNVMYDDILRLTLPEGCTLVGF
ADDIALVTVSKHVRDAEEKTNVAVGMIVAWLAANGLALAEKKTEAVLMSSRKKVEQACVRVGSTIIRTKPALKYLGVMMD
QRLNFKAHLEYASAKATAATAAISRMMANTGGPRQRSRQLIAGVVTSIILYGSAVWAPAMMVSTYSRDCRSAYRRCALRV
TCCFRTVSEDAALVVAGMVPLDLLAAERQSGVEVASERRERTIAQWQRRWDQAAKGRWTRRLLPQLSPWLRRRHGQMDHY
LGQLLTGHGCFKQYLHRFRHADDPYCSCCGPGVDEDAEHVFFVCPRFSQERTRLGETLAEVSVDTLTDQMLADEQSWNAV
AYMAASVIKELRRLERSRTN
>R1-3_DF_pol#LINE/R1 2005-4959  [Drosophila ficusphila]
MIRIYQLNMNHCEAAQDLLAQSLRENRSDIAILSEPYRIKPSNTWAGDKLRKAATWSCGQHATPLTDIMSEKGFIRAKVG
WLYVYSCYLPPSLSLEEFTGILDLLVRDARDKSPCLIAGDFNAWATDWGSVSTNPKGRAVLDAFAALEVTLLNNGRENTF
RRGNAGSAIDLTFVSSTLVPRTSWNVSKCYTHSDHQAVITVIHSRALAPVPTRVSRYKPEXLDKDVFEYMLQGLHPSGTA
TDMASQVMAHVTRACNASMTKTGNGPNRQPVYWWNDDIAKARKECFRARRAYQRALRRGVTHAAAQQXTFKEKRRALKAL
IKXSKKRLFLELCDQADSDPWGTAYKLAMKRLHAFRPASPKCPDLLXKTVVHLFPQQPPRXVDRMAXANWTETTPERVTE
EEVLIAARRIKPGKAPGPDGIPSAVMRKAIELQPSYFATLFSRCISEGVFPKCWKRQNLVLIPKGSKAPEDPSGYRPICL
LDTAGKALERVICSRLEASISSXGGLSDSQFGFRKARSTKQAIQEVVNLAARAIEGKRWRWGTKEYCLVVTLDVKNAFNS
ASWARIXECLVNKGIDPTLTRIIGSYLSQRVLRYETNXGXKTYRVTGGVPQGSVLGPTLWNLMYDGILRLXLPSGVKMIG
FADDVAIVAVAKHTHELEAITNEAIRQAXEWLANAGLSLAEHKTEAVLISSRKVVESVTLTVGGTAIRSRPHLRYLGIIL
DHRLSFKEHLKYTAEKASTACSALARIMPNTRGPKELRRRLLSSVVRSITTYAAPIWADATANKTYTKEVRAVYRTCALR
IVSAFRTVSGDAAEVLAGMMPFDVGIRELACAHEVSPEENRKRSLAEWQRRWQCSVRGRWTHKLIPRVEAWVDRAHGQVN
YYLTQFLSGHGCFRAYLHRFGHAEDPSCPRCGTSCPEDAEHVIFTCPRFSRQRDELQRQCGEPLAPENLVANMLASVSNW
EAAAKMANSVMKELRREEQANRRSL
>R1-2_DBi_pol#LINE/R1 1243-4219  [Drosophila biarmipes]
MKILQINLNHCEVAQSLLEQNVIEQNVDMALISEQYRNKNSGEWLANSSKKSAIWSCGNPRRQISRKKSGNCFARAHVNG
IAFYSCYLPPSLSLPQAINVLEEIAEDARENRPAVIAGDFNAWATEWGSPRTNARGRALLESFAALELVLLNSGTKPTFS
RAGTSSIIDLTFVSAGLASGSSWEVSDAYMGSDHAAIICTIKSTNGPPRVPKTVVGYKVETLDVEMVQMLFEDLSTNGSA
DERANRIADYTKVACDASMQRKGKLPSRKRPAYWWNQSIAEARKECHRARRAYQRARGRLEFRALQIYYREKRRALEKLI
KESKRRCFNNICEEIDSNPWGFAYKLVTKRLRAFSRPSPTCPVFLKRVVETLFPEQEGMARIAQIVDTRSIKLTSPEEVL
EVLKTIKDDKAPGPDGIPNKVLKIAIKANTKQYVDMYNACLTEGVFPSRWKTQRLVLIPKGDKAAEEPSSYRPLCMLDTV
GKILERIIHSRLESALVGTNGLSEMQYGFRKGLSTIDAIGKLCEIADKAIEGKRWLYGTKQYCIAATLDVKNAFNSASWH
HTLNALSKLNVPVYIQRVIASYFEGRLLLYETESGQSTHRVTGGVPQGSVLGPLLWNVMYDEILRITMPEGARLIGFADD
VAIVVTAKKLPDAERICNEAGKRASAWLDSKGLALAAHKTEAVLISSRQKVETATIKIGEATIKSRPSLKYLGVMIDHRL
SFKEHLAYASGKAGRTAAAISRIMANTRGPRQPGRRLLVSVVTSTLMYAAPIWARATKNGSYLQEGDSVQRLCALRVCCA
FRTVSHDAALVISGVIPMDLLAVESVGIRAGSTGVETVESLRKRCRQLTIAKWQERWANSSKGRWTHKLIPELQRWLGRK
HGHVDFYLTQLLTGHGCFKYYLNRFKHERYPHCPLCESDNEDAEHVFFVCPRFENERRDLSIRVGRTPAVCNLVEIMLES
EVNWSAVCNMATIILKKLRIAERLRNSNRIVS
>R1-1_DVi_gag#LINE/R1 734-2044  [Drosophila virilis]
MEDELHAFARRSALQRSPSHQAVTPVQQRVAASSPAKASEELPRTLRGTIEKMGLVLNGLTALFNGQRHINGLMREELAR
VESLQKVALKLCAPETKCDEAQTTPSLARRAEPNVLKTRPTKLGGQKEASTPKRPRDGVPEQRRTPSKKAKRQGQNPAKQ
AVLTHQKTAPANSNLAGHNGNPESWTAVNGRKRTQKRPRADAITVRGVGDCTYADMLRLVKSDPALKHLSGDVHGIRKTA
KGDLLLRLNRKPEHSADELQEAVGKALGDRAVVRTLTETSQVEIKDLDELATKEEVLEAIKSALQDDSLPIETIKSLRPA
FGGQQRATVTLPAPKARTLVEKAKVRIGWVVCRIRAIDQPKRCFKCQGFGHIAANCTSGDDMKGACFRCGDTGHEAKSCS
KPPKCSLCIRKGEKSTDHATGSFKCPAYREAVRKMKC
>R1-2_DM_gag#LINE/R1 18-719 [Drosophila fruit fly genus]
MCDDPSIPGKQSAERVRKEVAPALGVRVHEVRELKCGGAVIRTPSVSEMKKVVANKKLAEVGLKVQPKKSQRPKVQVFDV
DSGIQPDGGIVRQQFKEEFSPAAFMKEMHLNTKPWSVTDGERANLTLEVDEKALNVLEQTGRVYIKWFSYRCRSLVHTYA
CHRCLGFDHKVSQCRVKETICPQCGQAGHTAPRCTNPVDCRNCRFKGHPSRHSMLSFTCPIYGAVLARVNARH
>R1-2_DWi_pol#LINE/R1 2266-5205 [Drosophila willistoni]
IKFLQLNINHCRAAQDLLKQTVIDLGIDIALLSEPYGVKQDAAWAQNNIMGAAIWSCGHSPLQLECVGRHRGYTRAKCNG
ISIFSCYIAPSVDIDDFAAIIDCIAADARRSPPVIIAGDFNAWAMEWGSVKTTARGRILLDSFASLNVSLLNIGNTQTFS
RAGRNSIIDVTFASTSLARNATWIVSDVYTHSDHSAIIFECGGQTTRLARPKFSLWSQETLSEEAFLFMMNNAQRSAGDA
ETQVKRLCSAISEACDASMIRKRQGGSTRKPVHWWSHEIAEARKECLKARRKQQRARGSPSFQRLLDAYKTRRALLNRAI
KQSKADCWKKLCADADDQPFGAAYKLVMGKLAKRPSPTDGVLLANIVKTLFPERPILQHPVAGAHQETNPGYIISDDEIV
LAAKRIKSKKSPGPDGFPAGVIKLIAMNQPSKLADVFNSCLCQGVFPARWKRQRLVLLPKGGKTDEPSAYRPLCMIDVLG
KVFESIIRNRLEAHIDARNGLSEHQFGFRKKRSTVDAIHTVTEIAKKAIEGQRWKGGGKEYCLITTLDVRNAFNSASWMC
IFESLQRLAAPEYLIAMIRSYFEDRILIYETDRGQQEYKITGGVPQGSVLGPTLWNVMYDAVLRLDMPPRTQIIGFADDI
AVVTVAKELGEAEARTNDAVQSIVSWMQRNSLSLAAHKTEAVLISSRKRVETAIIHVAGCVIRSKPAIRYLGVMVDHRLT
YKHHLQYVADKAARATSALARIMSNHGGPRQKSRWLITTVVRSVLLYAAKIWAPAMAIQSYSRACRSQYRACALRVICAF
RTVSEDAALVISGMLPLDIVALEASSNSTAAQKREVSIRTWQDRWRHSSHGRWTNRLIPNVREWVSRPHGQTDFYLTQLL
TGHGCFKSYLHRFKHESDPYCTYCTGPIEDAEHVFFVCPRFTAEREELSQGIGRPFIVHDLMDILLSSQNNWLAVSHLAA
VIIQSLRRAERQRNQNSNSR
>R1-2_DVi_gag#LINE/R1 984-2468  [Drosophila virilis]
MMNRNNKSTTPLGGQEEEGVCKADPFARRSCLASTPPATPVRAPQPTAPCREIEEKETPKRLRDPASPTNKPRSTPPKKS
KANTQEIEEIGSILDELLFMYHGKQPAMRHINLATKSMLARLKELQEVVKAXLTENLRMRCSEESHKQMSHAEESAGSNS
KCDTATQTEESGACSKPPTAAQKPTNEVTGKNQILAPSNSKPAPTRKQQRSQPAEGKVPTQAREAKTPVKNTREVKNKWT
EVKGKLTRRKQPNRPDAILITCTESMPYADVLKMVKTAPALQALKNNVQGIRKSAAGELILRLQKPSDPATDQLRVAISS
ALAGKAAVRTLQETVQMEVLDIDESTTADEVLTALSASVEGDIPVEATPTMRAAYGGTQIASLALQPSLATKLLETGKVR
IGWVICRIRQKIEPKRCFRCMGFGHTSTRCKSQHPVGKETCFKCAGTGHKSGQCTHEAKCILCTRMGTGTNQAAHSTLSR
NCPEYKKAYKALRNG
>HaTad1-3_BG_gag#LINE/Tad1? 125-1576 [Blumeria graminis]
MAGWGARKVEFTAGKIFTAPPKPPTDSGTAAIMAVDSLATSTGVNMDNLKSIGYYLNKVRDRLVIAGTNPTATPMAEVDG
AIDALKSHALSLQSTMKATPMEERMLALEKAVTKSLEEPVRKMAPPSTQGMGGRPTYASVVAPPATKAAVRIRVQGAEKM
QPAELLNKAKIHIEGAYAVRQLRSNDTEVFVQSISQRDAALNMAQPKEFCVLKQDYPVEILGVPLGTMIHGGKNADNGRM
IYQITTETNVRIPGIQINRLRWLYDGKEHQWMNKNGHTRGSVIASLPTEALQREVIRNGIVLNSMLYTAQLWSPRAQVKQ
CFNCSQWGHTQASCNRAKRCGECAGTHQTRDCPRKSVLCCNCGKAHKSWQKGACPNFASYKVSVQRARYGLLERTADLRR
EEITAAATTISPAGKQVDNQGFTLVSNQKAEVGKRGPGRPRKNPVATAPPTQQFAPSGSNSRPQSSLFGTRGLGKDGEVT
YNFS
>Tad1-16_BG_gag#LINE/Tad1 102-2093  [Blumeria graminis]
MPPTRKPHKNAVSGTAKDRVSKTYQWNTAIQNHARNMLARRGLESNLQNMNAIAAALQAKENDVPEVEMVDAEVDRLKTL
ADSIWASSSPEDAEQVFPALPRLVEVRPSKGAEIITSKASTAPESVAEKAVPSTTTEPARVAARKIAVPLAKRTPKKSTX
RGTEVPDCAEAANVSRPQPPPASIPGTAECHNHSSGGAPTGTTPIHPPEIEALLEAERKRAANTSARLEIGSTVLKTLES
VILSMKTTDNKEYLDAMNVCLRGALAHFLRTGTTPVPTSLPPRPIGQQASSSGPPPPSTARXAXPAVAVPQVTPTWATVA
RXGLPKXPTPVMASRAPKMPTPPTKKSAKTXPSSTPDNRLFLRLNSKHQWRNLSPAGIREAVAQLTNAXQAAIEHVYRVP
TGFALRAKDQESRQXLLNAAESFLPIGGRLEEASXLVALQISTVPVAIHTLLGRVQVTEEMVIEEIXRVTKAVPVKVRPH
GKTRLDAPYKSWLAHFKKGAAPRQGFRLFDDSGVAVPHKPRQTVQQCKRCLQFHGTRGCSRAQACXNCTSTMHSTDECRA
HTKCRNCGGPHRSDSRACLARPTKSGPVSREQLANIRIASQRELAAVVRAKAAARRAEAAVQAAARQXQASPEAVKSNNS
FEVLMTDVAPDATATGTTNPVESS
>Zorro1_pol#LINE/Zorro gi|46431264|gb|EAK90859.1| polyprotein of L1-like non-LTR retrotransposon Zorro 1 [Candida albicans SC5314]
MLSNLTKSTPPHGLLVKLCYQSSKLPHKRLSSMKDQTNFCSMKMSTLRLMTTLNLRISTIPETMMTTWMRTQKKRTQKKR
TQKTTTKCQLMRFRKMKSMTFKKRMRMINTNQLKITSLNCERTTNINGLKQLIENNDITLLQDLGKTTRSLLDIIQLPLT
IIYSKLTAIVIHHKIDDLIKVTNQHTFELDPVAFPRVSDAVIRVNNKRKYHIINVYYPPNKFDEQRQLIRMIYRQLKNKN
TPIIMGGDFNHILNPEIDRQFQVRHNYSETRTTEESLLRNTQLKLIDAYRCFEPQAINFTNHNQLNNRRIDRFHLSERLE
KQLLSKDDAIRSTHERITIVLKFTNKPVIDMGKKRFMIKDYHIENPTFISNVLNSNPRDWAHLRQIIKRLTKKKRFPKVP
RSTTLTADTFDDLRIRYNGKSKPKKHIFQTIRDVHGRKASNTKEILDIAHGYLSNLFNKSPHNRQQITSYLEDFTPNISP
EQIATLDQPITLDELTKELKAKSNLSAPGEDGYGFRFIKSIWETCGPLLVNMGNHIRSTGNLPPDFKLILITLIPKTTKS
DYISDTRPISVINVGLRLISAVMNNKLQQIMESHWDHDQHAFIKNRSIQDIVEKFAITWERVKRWTTYSFAMVLLDFSKA
FDSLNHSYIHAVLMKYKFPQSFINFCMAITSGHIGNIRINDKSSEPLRLLAGVRQGNPLSPTIFILCLEPFLAKLKHSIV
GIPLEANIFVKVLAYADDVTVCLNNPKEQHILSNALNQFAKASGLEVNKNKTILLSRKIGSYKLPFQKHHADKPEIKYMG
VPLSPKLKLTFLKNWTKNLHTAVNLDLPLQQRALGINTYLISKLHYQDTLASFKQSEINKIALQMNQCFRGVGEENLLAL
PNQGGFGLMDIRTQTTYNRCKIIYKMLTSTEPHNWHLQVYRAKLQHRINYIQKRNKGSQILPWYNALVYDCGSLTERLIK
SRTLLPHLTASLIAWFQINKQHLLPYTNESQLMEFFPQETRLTLYTTTKINPHFVPTLNGTVDMTYYNHGSKKHQLALRK
TLMPSTWSATFNILEEQWALFFKQINKVKQQHPHSIDHYHRFNLGHYTYYKLSQPNCDLCEQPYTTTPLEHRFCQCIWAK
KTWQRLGPRNLSNHFSSYIANPLLTTEQYLALSCFIAAITALEIHWRYGHHRNTLDESSFVIWVRGFKYHYYHTHRF
>ATCopia18A#LTR/Copia 350-5009 Wised via estwise with ATCopia11 protein [Arabidopsis]
MSQSTDQYDNPFFLHGSDHAGLVLVSDRLTNGADFHSWRRSVRMALNVRNKLGFIDGTITKPTENHKDFGSWSRCNDMVA
TWLMNSVSKKLXQSLLFINTAEGIWNSLMSRFKQDDAPRVFEIEQRLSAIQQGTMDISAYYTELVTLWEEYRNFVELPLC
TCGKCECNAAALWEKLQARSRVMKFLMGLNDSYEATRXHILMLKPIPSIEEVFNMVTQDERQKNLKPFHKSDNVVFQASD
NAKFSVDQNPAAYTEYSYNGPADNNACAVQNSYKPRGASRPLCTYCGMTGHVIQKCYKPHGYPPGYIPGYKSNPTSPGYQ
PRPPSSQQSFAQPSFQQSFGQPPQPRAPFSSPRPPLHAVANVMTGPFNTPNVCVPPVVTQQNTPVTNVDFNQMNNDQIQT
LLQQLNTHVEISEHQEPSSSLSLITEHGAMHPSSSSGTVSFPSTSLRYENDKLTFQHQCLSTLYSNLPHGSWIIDSGATS
HVCSDLGFFNETVTVSGVTVSLPNDTRVDITHCGRIHLSESLILHVVLHVPSFKFNLISVSSLLKHNHLSAHFYLDFCFI
QESIQGLMIGRGILLYNLYILQLDASSAVSSSHSSHFSGSLAVDGKIWHQRLGHPSSNKLKVLSCTLSLSKSHVLESHCD
ICPLAKQKRLSFESNNNQSVRPFDLIHMDVWGPFSVESVEGYRYFLTIVDDCTRVTWIYLLRNKSAVSSKFPDFISHVRT
QYNAVIKAIRTDNAPELAFHDLVAKHGMLHQFSCPYTPQQNSVVERKHQHLLNVARSLLFQSNIPLAYWTDCIHTAAFLI
NRIPSVLLDNMSPYEKLTQKXPQYLFLRSFGCLCYTSTLQKDRHKFSPRADKCVFLGYSSGFKGYKGLHLDTNIVLVSRN
VVFHENVFPFKTDKSYMQDNDLFSDSILPLPIDSHLHMEPNSVVNPDLGIHSSHDTPSSSSSSHNASSSSSQPSVTNSFL
ETVTTGTTTVSLQDARPKRSTKVPGYLSDYHCALLQSTTSPEVLTTKLKVITTPYPLSSFLSYANIKPAYQNFILSISVE
TEPKNFKEAIASVQWTKAMNVELGAMELNKTWSVVSLPPNKNVVGCKWVFTIKYNADGSIERYKARLVAKGFTQQEGVDY
FDTFSPVAKLASVKLILGLVAKKGXSTPQMDVTNAFLHSDLEEEIYMSLPEGYTSSSGVFPPNPVCKLHKSIYGLKQASR
QWYKCLSQVLLDVGFQQTYSDNTMFVRLTGTSFIALLVYVDDILMVSNDDEAVQSIKSVLAASFKIKYMGPAKFFLGLEI
ARNSDGISICQRKYCLDLLTKTGLLGCKPKSVPMDPKVPMNKETGTLLTDGTPYRELIGRLLYLCVTRPDITFAVHCLSQ
FLSCPTDVHLNAAHHILKYLKNNPGQGLFYSADTELCLNGFVDADXGTCKDSRRSVSGVAVFIGSSLITWKSRKQDVASS
NSTKAEYRSMAVATKELLWLSQMLQELHIKVDFKAKLFADNKFAMHIANNPVFHERTKHVEIDCHNTRDQVKKGFLTVHH
VTTENQLADILTKALHPGPFHSILSRLSVSSLYL
>ATCopia13#LTR/Copia 116-4591 [Arabidopsis thaliana]
MSIAEEVSSATHPRTNQQPDVTKVSPYTLASSDNPGAMISSVMLTGDNYNEWSTEMLNALQAKRKTGFINGSISKPPLDN
PDYENWQAVNSMIVGWIRASIEPKVKSTVTFISDAHQLWSELKQRFSVGNKVRVHQIKAQLAACRQDGQPVIDYYGRLCK
LWEEFQIYKPITVCKCGLCTCGATLEPSKEREEEKIHQFVLGLDDSRFGGLSATLIAMDPFPSLGEIYSRVVREEQRLAS
VQIREQQQSAIGFLTRQSEVTADGRTDSSIIKSRDRSVLCSHCGRSGHEKKDCWQIVGFPDWWTERTNGGGRGSSSRGRG
GRSSGSNNSGRGRGQVTAAHATTSNLSSFPEFTPDQLRVITQMIQNKNNGTSDKLSGKMKLGDVILDTGASHHMTGQLSL
LTNIVTIPSCSVGFADDRKTFAISMGTFKLSETVSLSNVLYVPALNCSLISVSKLVKQIKCLALFTDTICVLQDRFSRTL
IGTGEERDGVYYLTDAATTTVHKVDVTTDHALWHQRLGHPSFSVLSSLPLFSGSSCSVSSRSCDVCFRAKQTREVFPDSS
NKSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTE
FMCLSSYFKEQGIVHQTSCVGTPQQNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSSIHNGLSPYE
LLHGCKPDYDQLRVFGSACYAHRVTRDKDKFGERSRLCIFVGYPFGQKGWKVYDLSTNEFIVSRDVVFRENVFPYATNEG
DTIYTPPVTCPITYDEDWLPFTTLEDRGSDENSLSDPPVCVTDVSESDTEHDTPQSLPTPVDDPLSPSTSVTPTQTPTNS
SSSTSPSTNVSPPQQDTTPIIENTPPRQGKRQVQQLARLKDYILYNASCTPNTPHVLSPSTSQSSSSIQGNSQYPLTDYI
FDECFSAGHKVFLAAITANDEPKHFKEAVKVKVWNDAMYKEVDALEVNKTWDIVDLPTGKVAIGSQWVYKTKFNADGTVE
RYKARLVVQGNNQIEGEDYTETFAPVVKMTTVRTLLRLVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKV
CRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYSFFSYSCKGIELRVLVYVDDLIICGNDEYMVQKFKEYLGRCFS
MKDLGKLKYFLGIEVSRGPDGIFLSQRKYALDIISDSGTLGARPAYTPLEQNHHLASDDGPLLQDPKPFRRLVGRLLYLL
HTRPELSYSVHVLSQFMQAPREAHLEAAMRIVRYLKGSPGQGILLSSNKDLTLEVYCDSDFQSCPLTRRSLSAYVVLLGG
SPISWKTKKQDTVSHSSAEAEYRAMSVALKEIKWLNKLLKELGITLAAPTRLFCDSKAAISIAANPVFHERTKHIERDCH
SVRDAVRDGIITTHHVRTSEQLADIFTKALGRNQFIYLMSKLGIQNLHTPT
>Tad1-15_BG_gag#LINE/Tad1 462-2006  [Blumeria graminis]
MPAINKANMASKSPSPEGSLPSMPSSPEMDMSDVPRLTSSIWNTDLSPKPSRLLTSVRPVNLTSKVDIFSSDPITSTDLG
TKNLFLKTPFADQPRKRGISATNHTNSQPSKMVKIAAPHSIKHTFETAIFEARDLLVKAYSLTGDKEKQVAVLDLIEVFR
SFTEKGKVTTTQPPVQVSTPEPAESSAIKQQPPPVAPAVPSYAQKVREGIPNNKPATVTPARPVMKVLSRKAAAPTISNT
GQVTNTRPIIPAATTSTTNAAPATTAKIIDTENVITLVTRSGCSLPNYQAFTIRERINKILGKRAISRVHTSPKGNLVLS
CMDASPTELILDQEKWEVVFAGWPIQKAQKVTNWPKMVVHGVATCIPIHQLNEEIETYNDGINTQGQARWLTKSPSKLVR
ASVAFCVKTEEQKTRLIKTGVLIGGQLLKVVSYQQSTQKTQCRKCLTFGHHSMWCKKSPVCAICLGPHYTNSHKCNTCSA
TQSCIHHAVQCANCKSNTHLAFQRLDCDYYKALTC
>Tad1-4_TMe_pol#LINE/Tad1 2605-6564 [Tuber melanosporum]
MRITTLAINVGASVGNRSLAMDLFSYVDMFFVIDPPVGNDGCHVAHEVEGFDLFSFVVGSGVEVYVRSVLCGLFEIGGHD
MTCAMVDYVYEGVACRVGGVYFRPGMAKADFEKACEDMVGCDVLLGDFNARHRYWNAAGDPMVNNHGRWLFGYLQQQQLG
VTLPQQHTFRNVSTIDLCLWKVRPRYHRYVDAAGLEHCGQIIRWLADVPAMGMRPRPAWKRAKWDQVAIGLDRLRSLGDE
ELWGGVRNIVDGLPRCGMGRSRCVWWTVELERMRKDVQRLRRMRRGDVGSEDYKLARNVYRCTLVNARYDHIRDRLAEAR
DPEIFRLARAIETRRTIPPMVDDNGICVHDHQAVSDLIAAQLDPVSVAPWTTAQAIELEPAVDIGMAIRRSPGNTGPGMD
DIGYPFIRFWHRRDPVTVQRLVDYGLRHDIEDWHSAEVVLIPKADKPRYDIVKSWRMIHLLPTLAKVAERVVLMRLASSI
DLGDTQFGSRRKRGCHDAISVVYEFLAHNKHLKAAVVSIDVEGGFDHIDLDLLSDFLVARGCPAILCAWVRRWAMRRVVQ
FRFNGRISRRYQTTKGIPQGSPLSPFLFGVYVADIFTPRLRYRPSLRSIVISYVDDGVIAVATGSVQSTLQHIVEIFEDC
NRVARTRGMGFSPIKTKWLGFGDVSWQALQLDGNDIEPSEDLRILGYRFNRFGNMSAHVGYWLNRGLGVRRRISALGRRF
GSVGGLGAWETFRLFQSAYLPTVYYGLEFVTDFGSYVKRIQVHVNDCLRSLFRCPIKVANNILMAEFGTPPVALQGRYLQ
RRCYSRMINYKYCADHPWFGSVRDHWADPDMVPYRMLSDKRLLRPCITFPTAVKEGAAGRHHQLLEDLSTSETLIIYTDG
SKTSLGCGMAWVVCEGGMYEEARGRAVPLGWSIVECELLAIVCALREVSLYHSGTVDLFTDCASAISLIRDMSPEGESAG
IWEALCPLINCFKQVNIRWVPGHAGIHGNELVDKMAKAAVYFRPQPRHWQDLCFGIGHSMIAKDKRKREWLRWHKDEGHS
YYERKPQPPRHLRGLTRMDAFVLLRIRSGTGMVGHDDCIGKDARRHWTECSRYNTLRPDKLYDDRQVAAWKTWWTWHDYL
GLGIPSHLSIIHGERIVAGNPFDHTLYVKRGGTLTVVTDDSYDDHPVRHTGNMAQYVFALFGRPDICACCGRIFTSKRMF
QRHIADHPECADDWAGVYWEQMVGMWHELDYATRNSLVIFWALKIADYGVCCPGCASVFASRSAMVGHVRGRSRCWDKLF
DLFWAWACDNLDVLEGDIGRRGARHEDALIRDPASRDERP
>Tad1-1_TMe_gag#LINE/Tad1 1-735 (fragment) [Tuber melanosporum]
VKEVRILSARFLVQDEEIRLSKANTSCIVTVAPXDVDKMVGRTVLYASRCRIERAFSANKFTQCKNCWGYGHQAPRCKTD
HPVCPICALSHTKATHRCQNPTCPKGGNLKPVAYCCPTSVPFCTNCSSAHPAFDQSCTQRPKPPPLPASESPPPGEEEMD
TQDDGGEGPSSRPPRPQNLAPSVDLGDGLATRAPPNLPFSTPFRRPGSVFPVPSTPSRPQGTDPSRTQEDVTPTPVPKPP
AGSSR
>Tad1-5_BG_gag#LINE/Tad1 58-1569  [Blumeria graminis]
MPDPPPPPIPPSVVGAPTTLTETLNQATSAANTRTQEATLLFGSVAAALDNVTCGTAASTIPLHLQKTYNEFLTRMQAVA
QEFFENHVRGVPIPATNTHLLTAQPKPVAHAKASYANVARKPKGNAGVSTPQKPRPANLQKQAKPLPLDDRLFLRLDENA
TERLISAYSLLLQLRNFLGENSAMLKEVQHVPSGLALRPSSEAALTRLEDLFVQGIEEGRFPGVQGIEKAQNLDSYIITS
VPRTXTTLDKNNRLVKEPITPELVLKELKEENGFNPTVVVETKGSIASPYDPSARFIARFPTGSRLPRRFRLFGMGINCR
KLSEKVNIAQCGRCFQWHNQRICARTPRCRLCGSVEHTEETHKPCGPHQHPCPSRRIHCHGPHPADAPECPLRPRLNGIK
LTKGQVAQIRSTSAAARIGLCTTVGCIRGNTTNTSVDEEMTDTPSGQAPIYTQATNPSGTTPGPLMLEGPPSSTQLVRTT
SPSPPRPTVFLGNRYAILDVEDEV
>Tad1-10_BG_pol#LINE/Tad1 2052-5753  [Blumeria graminis]
MSINVGRGGSTQNIALARAFELGIDVVLVQEPLWNKPKKTTKDHPGYTYHLPHGGENVRPRAVTYTRIDDKKISATQIFP
YGVSTGDYCWVEVNGITFLNVYKAPNDSTAIQPLINWTPPPNSVAAGDFNSVYWAWQPGTERPHGQGEMIEKWADKHHLT
CHIVGEPTHRAGNTLDLVWSNIDGARAWVDRGGCVTSDHFPIRGQIPVRNSVMRPEKAKLRVTKXKLPRYAEVIAXWVRP
PPVLDTTERVEEYAZEICFHLTNAINAVGTRPRAXXGRSAPWWTPACKVAYAEYKAAIAPHQRALCAEKLRSVVKASKKE
FKTQQVESITTPNDVFKLMRMGNPRQASIPPPLKHNGTLITDPLKRATILRDALLARYQASDDLSPCTVTSSSRIPWEED
VLDEEVRACTIGCGNTAPGADGVSVNLLEACWNTIGPWVSQLFRACILLGTHPQCFKLAEVVLLQKNDRDPTTIKGWRPI
ALLSCLGKGLERLLAKRMAHLAVTHDVVGQQQFGALPKRSATDLVSCVVHDIEEANSQGWAATFVTLDVQGAFDAVLHNR
LVRRMQEQGWPEXILKWTXSFLANRMVQVRYSGGVTAKRELVCGVPQGSPISPLLFLLYMAEPMRAGTPGLRFSYADDIG
ILGXGRTIAESAAAAQEEVNHLLEWARNNAVAFDIDKSEVVQFPGRYREASIGIXVNGTLIEPSQNVRWLGVYLDPRLNF
KHHVTTWCGKALKIAQHMRRFNTAYRGAAPGALVKAIDTCIVPIATYGADVWWPGLRRPTVRGMVTPPTAGLCSMIDKAV
LMGLRSALPVMRTTPNAVLHREGGIPTGKIILEGNRLRLSARMQTLDDRHPLRIRAAVCPNVGTRKFKKHNRKSARPEIQ
MSRAQRAYRQLPEAEAAEPLASPFYQSRPVSKAGSRKDQIEACKLWITNVPKSEICAYSDGSSEGSGRSAWGFVLKLDGK
TFLKGSGLKHGGEALDAEITGAREALKAALGHLRGKDDQAKGTTQCINVLMDSRQAINALSTGRSSTSHEEVRRFRELSG
LAQVRIKWVPGHSGIHGNEEADAAAKSALRTLPSVETEPATTTTAFLHQKMHRQRQSLLDSWWNETCPPRYRELDLLMRR
RKPPELGLSRLLLRXLIAARTGHGNFAAYHRRFNNPHAITECTCGEETTPTHFIHCRLNANTTRRIRGSLSHSALLHKLL
GPKGLESFKQFAQDTNCFGYSPVHPSPTLSGDRI
>Tad1-9_BG_gag#LINE/Tad1 58-1644  [Blumeria graminis]
MPPQSSAEAGSWPPLPPANSTRPDVEMVLNGPQQQHTTHTQQFVEPICEASHRNSPPNPTPSPQIVATEFLAEQGRIFQT
RSAQAERFIIGFCKLLEPVTDERLRRLFDQDLLALQGKIMEILWGNPSQADATLPQRTAVGQANLSNPAQVIEPPQPNPA
SVTRPVQILARENNRPAPSRPSAAPTTHQPNQGTNTNHNNTTEKSWTEVLRKRNKPANQATPSATPKTVLVRPVSTLKPK
APAPNPQRPDERVFLRLRPDHPWRRMSPHFVKISLASKLRLANSAIKQVTVVNSGFAIQAEGEGARGALLSGGANLDSSE
MKLEAASSWISVLAPNIPDKLYTLEGPTPVTPEMVIEEAALKTGVRPTSARAFASSMARPSTDWVLHFATGKPKLGERLF
EESGRLHELQRKLKIAQCNRCWGHHPTKICSRAERCSRCGSIEHKAAECKQLVPRCINCHGPHAATEPSCMARPTRAGGK
TVQRTRDQLSVIREQGQKERNASIRELEAKQKAAEATAENETTNVAQCP
>ATCopia19#LTR/Copia 14-4224 Wised via estwise with ATCopia47 protein [Arabidopsis thaliana]
MDRSMEIYSCPSLDISNCVTVKLTDRNYLLWKSQFESFLSGQGLLGFVTSAISVPASTIPVPHIEGHTDTAANPDFQAWH
RSDQVVKSWLLGSLTEDILSVVVGSKTSQEVWLNLASHFNRISASRVFELQRRLHGLSKEGKTMDEYLRCLKNICDQLAS
VGSPVTEKMKIFAMVHGLTREYEPLITSLENTLDXSPGPSYTEIMFRLKSYDDRLQGYTAADVSPHLAFGTFNNSSRGRG
KGSRGRGRGNYSTRGRGFQQQFLSLSSQSSGERPTCQICGKRGHPAIQCWHRFDESYQYSEAAAAAFSALHITDVTDDGA
WVPDSAATAHITNNGQRLQQSQPYYGNDTIMASDGNFLPITHIGSASLPSTSGNLPLKDVLVCPDIAKSLLSVSKLTKDY
PCSFTFDANGVLVKDKATSKVLTMGSSTSDGLYKLENPKFQMFYSTRQVKASDAVWHMRLGHPNPQVLQLLSLSKAIKIN
KSTNAACESCRLGKSSRLPFSSSEFIASRPLERVHCDLWGPAPVSSVQGFQYYVIFIDNLSRFSWFYPLKRKSDFCSIFI
KFQSSVENLLQTKIGTFQSDGGGEFISQRFFKQLQDSGIQRYMSCPHTPQQNGMAERKHRQLTEMGLTLMFQSKTPQKYW
VEAFFTSNFLSNLLPTIALATKISPYEALFGKVPNYSALRTFGCACFPTLRDYARTKFDPXSLKCIFLGYTDKYKGYRCF
YPPTGRVYLSRHVLFAEESFPFADTYINQQTASPTPLFAAWLQGFSTTSSSETNTQENGTTASTENHQQESMSENQPIFG
NGLSEENSENMQLTIADPISAIPLQTVLQQDNETTPEQRSRSDGKRPECTASLDLDPIGNIVSPLPSRLEQLASRTTTAT
ESTHPMVTRSKAGISKPNKRYAMLAHKVSHPMPKTVTEALKDEKWTAAMNVLGSKWVFRVKLLADGSLDKYKARLVAQGF
NQEEGIDYLETYSPVVRSATVRAVLHLATIMNWELKQMDVKNAYLHGDLTETVYMKQPAGFVKKALPNHVCLLHKSLYGL
KQSPRAWFDKFSNFLLSFGFVCSFSDPSLFVCVKNSDVIMLLLNVDDMVITGDSSKLLSNLLNELNKQFKMKDLGKLNYF
LGIQAQFHQKGLFLSEPKYAEDLLFTAGMKDCAPVATPLPIQPDNAPHQSQLFDNPTYFRSLAGKLQYLTLTRPDIQFSV
NYVCQKMHAPTLSDFHLLKRILRYIKGTTTMGISFNKNTDCKLRAYSDSDHAGCHASRRSTGGFCTFLGNNLISWSSRKQ
PTVAKSSTEAEYRAMSETASEITWIVNLLKDLGVPXLQKPELFCDNLSAVCLTANPSFHPRTKHFATHYHYVREQVAFRE
LIVNHIPGYLQLADIFTKSLPAAPFTTLRFKLGVDLPPTPSLRG
>COP10_MT#LTR/Copia 97-4467  [Medicago truncatula]
MAPRNNNGAGSSYEVALDQTSPYFVHSSDGPSSVTVTPLLNGSNYHSWARSMRRALGGKMKFEFVDGTISPVTDSFDPSF
RAWNRCNMLIHSWILNSVDSSISQSIVFMENAMDVWNDLKERFAQGDLVRISELMQEIYSLQQDSKSVTNFYSELKVLWE
ELEIYLPMPSCSCRIQCSCEAMRTARKNHVLLYAMRFLTGLNENFNMVKSQILLMDPLPPMNRIFSMVLQHERQGNFAPI
IEDSLPSINAVNSGKPKYGNSGNMYKNTNQSSNSNYNKNRSCTFCGRSNHTIETCYKKHGYPPHLQRNFNNSSYANHTAS
SETENPTSDEPGRVASTSITNEQYEKLMSLLQVSSSKQDSVTAQASANQVFSTPSGHTSNGKHSTSCILSLTCHSFALNS
WIIDSGASDHICGNLQWFHSYNEITPMHIKLPTGHYAIAKHAGTIKFSSNFSISHVLYVPEFHFNLLSVSKISDSLNCIV
IFDGSKCLIQEKNTQRMIGSGEKREELYYLNPPDKMVCSSSIVKSPSTFLPDSALWHFRLGHLSFSRMNVLHSKFPFVNV
DSKATCDVCHFAKHRKLPFTPSCNKAKQPFELIHFDIWGPISIKSIHGHSYFLTAVDDFSRYTWLTLMKTKAETRQHIVD
FITLIENQFSYKVKTIRSDNGPEFLMPNFYSSKGILHQRSCVETPQQNARVERKHQHILNIVRALLFQSHLPKQFWSYAA
IHAVFIMNRVTSPIIDNNTPYFLLHKQIPDLNQLKVFGSLVFSSTLQANINKLASRARKCAFLGYKSGMKGVVLLDIITK
EIFVSRNITHHENIFPYQPVSSPPLWNYYSSIPSKSLDQNLDSNSSVCNDFTSSDQNSPTQTSLDMHIDNAPNPDITDTS
LPSISKPARIRNAPSYLTDYVCNSSSAFASAPKSSGTLYPIASYHSYAHLSSSQKSFSMSVTQCTEPKTYKEASQSECWL
KAMDSELEALAKNGTWSIVDLPHNVKPIGSKWVYKIKHKADGSIERYKARLVAKGYNQVEGVDFFDTFSPVAKLTTVRIL
LAIASIKNWHLHQLDVNNAFLHGDLQENVYMNIPEGVSSAPNKVCKLHKSLYGLKQASRKWYEKLTSLLIAEGYTQSPSD
YSLFTIQQGSNFTALLVYVDDIILAGSSITEFTRIKAILDAHFKIKDLGILKYFLGLEVAHSKEGISISQRKYCLDLLDS
SGLLASKPASTPLDTSIKLHQDNSKPFADVSCYRRLIGRLLYLNTTRPDITLATQQLSQFLNAPTVSHYKAACRVIRYLK
HNPGLGLFFPRHSDLQILGYVDADWAGCIDSRRSTTGFCFFLGSSLISWRAKKQATISRSSSEAEYRALSTGTCELQWLL
YLLKDLQVTCIRQPVLYCDSQSAIHIASNPVFHERTNHLEIDCHLVREKVQKGILRLLPISTEEQLADFLTKPLSPPKFN
SFVSKLGMINIYHAPAC
>ATCopia88#LTR/Copia 212-4899 Wised via estwise with ATCopia22 protein [Arabidopsis]
MKTALSLRKKFGFLDGSIPKPADGSLDLEDWWTIQALLVSWIKMTIDPSMRSTISHXDVAKDLWDHLKKRFGVMNGARIQ
QIHAGLACCKQRGAAIEAYYGKLTQMWDSLASYRPIRACKYGLCTCDLATAQEADLEEDKVHQFLCGLDDQFRTVRSTLV
ARVHVQPLEEVYNILRQEEDLRINVEEKPTDVTSFSVQTXPRFKLDDKEKGVMCNFFNRIGHSPDKCYAVFGYPKWWGDR
PKGRTLQGRGHGGTNGGARRGCGSTSYTNAVQVNPLTSYEQANYVVTEKDSDEVTGFIDLQWKAIKNLLNNGKTNETEKX
TGKSSLPLRIVDTGASYHLMGHLDILESVKEMEQISIVLVDGREKVAVKERSVRIGPCLILRSVYYVENFHTDLISLCQV
MDENNCVGQLADRFLVVQDRTTRMVFGVSRRTGGTFRFRSMESAAFVEVRDDKSFELWHKRMGYHSNKVVGLLPVVSNVV
SDILNKACDVCLRAKQTRLSFPFSENKTKGXLIYCDLWGPYRTPTHSGARYFLTIVDDYSRGVWLYLMSEKSEASNHLKN
FLAMTTGQFDTPVTLEYLFQVIXKAKVGSFFRVIRSDNGSEFLCLSEFFKQQGIVHETSFVGTPQQNGRVERKHQHILNV
ARALXFEANLPIAFWGECVLTAAYLINRTPSMVLKGMTPYERIYNEKPKYNHMKVFGTLCYAHDQFHKGDKFAFRSRRCV
FIGYPYGKKGWRLYDLEKYQFFVSIDVVFYENEFPFKSEVEEEIAEEELEVLNLQSLFVENEEENGRTSSIREDGPLTPQ
STIGPTPSPTGLLKTQFLNTLLHFKTSSSREVKELXNQNRSTMIPTPTPAIVPIMSSTTNLQVQEEQLGRGKRQKTQSVK
LKEFVVNTGILKSKTASTSDSTSSHPIANFISCERFSTQHQAYLAAITSGVXPKSFKQAMKDEKWKSAMSSEIDAQERNH
SWTIEDLPQGKQAIGSKWVYKLKYKLDGTLERHKARLVALGNKQIEGVDYGETFAPVAKMGTVRLVLDTTVKNVNXKKKR
VFLLNNTFXLTLSQTHDEYKELILILQKEPSGSLFAVKDLVTLVNHXPLSSSDVIGLKRLHSTMXRRVSWLTLLLLQILQ
TLFCLTVMLRGTLDLGIVLXACDWADWACVLSLTKNRRDVHQIDVYNAFLHGDLEEEIYMRLPPGFQASDSFKVCRLCKS
MYGLKQSPRCWFAKLSTSLQEYGFEQNKLDYSLFTLDKNDXHIRVLVYVDDLIISSPTVMDDFKSYLSSCFHMSDIGLLK
YFLGIEVARNSTGMYLCQRKYALDIVSDTGLLGSKPVAFPLETNHQLGLSKSPLLQDPEPYRRLIGRLIYLAVTXPDLAY
CVHLLAQFMQQPKQDHWTTTLRVVRYLKNNLGQGILLRAETPFCFTGWCDSDYASCPLTRKSVTGYFIQLGGSPISXKQK
KQKTLSRSSTEVEYRAMAFLTQELXWLKRILQSLGVKHYQSMSVWCDSKATIHTATNLVFQERTKHVEVDCHFVRDEVLS
KNIRLLHVQSHKXLADIFTKPLGKKEFDRLCIKLGIQDLHAPT
>COP14_MT#LTR/Copia 262-3950 via tfasty with TST1, 2 frameshifts and 3 stopcodons. [Medicago truncatula]
MNKSKTRREKARQRVMMGKTIFNSSTEGLALQDTSHQGQQSSSNSLPSTNEQLYNILESQTTSRMFSFGSIAEKDNFLES
ALLSVKPSRTWIVDSGATDHMTGESSMFSSYSPCAGNLKIKIADGSLSAVAGKGSVIISPLLTLQDVLHVPNLSYNLLSV
SKLIQDKRCQTHFFDTHCLIQDSISGKMIGNAKLNGGLYYLEDKLETGHQLGQISSFSESFFVSNNKDDVMLWHLRLGHP
SFKYLKTVFRKLFVGKDFSSFQCEICELAKHHRSSFPAQTYKPSKPFSIIHSDVWGPNMINSLSNKRWFITFTNDHTRLC
WVYLLKEKSEVGQIVKNFIxLVQTQFNSTIQVFRTDNGTEYFNTVLGNFFYENGIVHQSTCVNSPQQNGIAERKNRHLLE
VARALLFSTKVPKYLWGEAVLTAAHLINRMPSRVLNLKTPLETFLKFFPIASVAANLPLKIFGSTAFVHEHKQIGKLEPR
AIKCIFVGYSPTQKGYKCFDLNSKRLLVTMDVTFFENKPFFESNHLQGGKSNEDSSYFFEDLILSENMFMSHSSRPSVPI
ENAPDNVNESTPSMSEDVTESGATNQNSNNDSLEPKDNQELIQMSLHEHPYNETERKFGEVEGTWKGVIYGRKNHDKVVE
DLIPQHSHESEPRENQLTKTNKGKGKISPDFHDPILDVPIAHMKPVRACTKHPMSRFVSNSNLSSSFSAFTSHLSCIEIP
KNVQAALNVPKWKEAVFEEMRTLEKNNTxNVMTLPVGKRTVGCKWVFTVKYNSDGSVERYKARLVAKGFTQTxGMDYSET
FAPVAKLNTIRILLSLAANLDWPLHQLDVKNAFLNGELEEEVYMDGPPGFEEKFGSKVCKLKKSLYGLKQSPRAWFEKFT
KSVKKQGYTQGESDHTLFVKYTPGGKITILIVYVDDIVLTGDDVTEMERLKRNLAAEIEIKDLGSLKYFLGMEIARSKKG
ISVSQRKYVLDLLQETGMSGCRPADTPMDPNLKLWEKGDTPVDSGRYQRLVGKLIYLAHTRPDIAFPVSVVSQFMHAPYE
EHLDAVYRILRYLKAALGKGLFFGKTNDRDVAIFTDADWAGSITDRKSTSGYCTYVWGNLVTWRSKKQGVVARSSAEAEF
RAMAQGICEGLWIHRVLKELKMTVELPLKLYCDNKAAISIAHNPVQHDRTKHIEIDRHFIKEKLDSGILCLPFVPSNQQT
ADILTKSLARTSFEHLISKLGMIDIYAPT
>COP_MT#LTR/Copia 305-4486  [Medicago truncatula]
MSSTPATSSSVKSDFHPTLAVTNIKNSIPFVLEMEKDHYTMWAELFEVHARAHKVIDHIIPLPGKEKPVSTDANFEMWTI
LDSTVLQWIYSTISFDLLTTIMEKGSTAMAAWNRLADIFEDNQNSRAVALEQDFSSTRMEDFSNVSAYCQRLKQLSDQLK
NVGAPVSSHRLVLQLVSGLSEPYRGVATLIRQSNPLPSFFQARSMLTLEESGLAKMHNTSSPTALHTAVPRDSDDSSQQR
SNRRQNNRSGSGRNRNNQTRTGGRGQRGGSRSDGPSWTPQPWQQPQYPPWSPWGWTPPPWSVPPCPYPTSQWTRPAGPSR
QPGILGQRPQAHTTTASPAPTDIAAAMHTMSLTPPDSTWYMDTGASSHTAASHGNLSSYSNLSNLNQKLIVGSGQGIPIL
GSGHTTLPTSHKHKTLNLNHVLHTPQIIKNLISVRQLTTDNNVSVSFDPFGFSIFDFQTGIPLMRCNSLGDLYPVTSPSH
FAGLASSLWHNRLGHPSSSTLQSLHSNKFISSEHLSSKTICHSCVFGKHIKLPFDSSKNVTLLPFDILHSDLWTSPILST
SGHRYYVLFLDDYSDFLWTFPISNKSQVFEMFTLLSNQIHTQFSQTVKCFQCDNGREYNNTSFHKYCDDNGLVFRFSCPH
TSSQNGKAERKIRTINNMIRTLLAHSSVPPSFWHHALQMATYLLNILPRKNLSNHSPTQLLYHRDPSYTHLRVFGCLCYP
LFPSTIINKLEPRSTPCVFLGYPTNHRGYKCFDLSHRKIIISRHVIFDETQFPFAHMPSLPPTAYDCFTDDLHPSIIHQW
TNPTLQPLPHDLPSPSPPIPDPPSTSRVGPHTPGTSSSPAPLAQPAPPTRTMATRSMQGIYKPKKLFNLSVTIDDPTISP
LPKNPKLALSDPNWKAAMQSEFNALIRNNTWDLVPRPCDVNVIRCMWIFRHKKKSNGCFERYKARLVGDGRSQIAGVDCD
ETFSPVVKPTTIRTVLTIALSKSWPIHQLDVQNAFLHGDLHETVYMHQPLGFRDPDRPDYVCRLRKSLYGLKQAPRAWYQ
RFADFVSTIGFQHSTSDHSLFIYRRGSDLAYILLYVDDIILITSSHELRKSIMALLASEFAMKDLGPLSYFLGIAVTRHV
GGIFLSQSIYVGEIIARAGMASCKPSATPVDTKQKLSTSAGTPYDDPTLYRSLAGALQYLTFTRPDISYVVQQVCLHMHA
PCTDHMLALKRILRYVQGTLHYGLHLYPSRIEKLISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAE
AEYRGVANVVSESCWLRNLLLELHFPLSQATLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSR
HQIADIFTKGLPRVLFDDFRTSLSVREPPASTAG
>COP16_MT#LTR/Copia 117-4039 via tfasty with Copia2_OS, 2 frameshifts and 2 stopcodons.  [Medicago truncatula]
MLFFLTTKKVAYVLNEAMPVAPSSSTPAGANNNGKVADPTAAEKAELEKADPDKQLAIDIALWKENDYLCKNYILNRLTD
PLYDYYRRCDTAKQLWETLQKKYDTEEAGVKKYAVSRYLNFKMSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVII
DKLPPAWKDFKSLLRHKTKEFSLESLITRFRIEEEVRKQDQNEEMFAVSNNNAKKKFVGAVLKPADKPFKNPNRPMNKNF
NRNKTRNNPRPQIQQPPKNDVAPPFNCYNCGQAGHIPRKCRNRTNRPAQAHMATAVAPDEPYVAMITEINMIAGSDGWWV
DTGASRHVCYDRDMFKIYTACDDQKVLLGDSHSTNVAGIGDIELKFTSGKILILKDVLHTPKIRKNLVSGFLLNKAGFTQ
SIGADLYTITKNGIFVGKGYATDGMFKLNIDMNKISSSAYMLCDFNIWHSRLCHVNKRIISNMSGLGLIPKICLNDFEKC
QFCSQAKINKExHKSVTRITEPFELIHSDLCELDGNLTRNGKRYFITFIDDCSDYTHVYLMRNKNEALEIFKQYVKEIEN
QFNIRIKRFRSDRGTEYGSHTFNEYYKELGIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVC
YVLNRVPKTKNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECVFIGYALNSKAYRFYDLKSKTIIES
NDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNENIERDVIEPRRGKRARIAKEYGPEYVAYTIEEDPSSIKEA
LSSIDADLWQEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFDTYSP
VTRITSIRVLISLAAIHNLRVHQMDVKTAFLNGEVEEEIYMDxPEGFVIHGQENKVCKLDRSLYGLKQAPKQWHVKFVNL
MIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGEADVILGIKITRTDNGISL
NQSHYVEKILRKYNYFNCKPASTPCDPSVKLFKNTGDSVRQIEYASIIGSLRYATDCTRPDIGYAVGLLCKFTSRPSMEH
WQAIERVMRYLKKTMTLGLHYQRYHAVLEGYSDVDWNTLSDDSKATSGYIFSIAGGAVSWKSKKQTILAQSTMESEMIAL
AAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTATIAKIENRYYNGKRRQIRRKHITIREYLSNGTVRVDFVRTNENLA
DPLTKGLNREKVANASSRMGLMPIDHK
>ATCopia68#LTR/Copia 52-4004 Wised via estwise with ATCopia49 protein [Arabidopsis]
MTNSKIKISVFDGTGDFSLWKTRMFSNLRILGLKDTLVEQASFPPLSEEDEADPTKKKKRIEEETEKIERCEKAMNIIFL
NVGDKVLRKIDQCKTAAKAWMLLERLYLVKTLPNHVYLQLKVYNYRMQESKSLDENIDEFLKMISDLSNLQIQVPDEVQA
ILILSSLPVKYEMLKETLKYGREGLKLEEVISASKXKKLEFQADSSSRSATQGLHVKGNQNNNSRSRSQDGKKICWIYGK
EDHFKRQCYKWLEKNKSSGNTQEAGASRLAKDDAQDXVGLVASEVNLSEDRLDQNEWIMDTGCSFHMTPRRDIFIEIEEL
TSGKVRMANNSFSEVKGISKVRFANIDGTTFVLHDVRYMPGMSRHLILMGTLEAKGCVFEGNDGVLEVMQGNTVFMKGSQ
RASLYILQGEAKKSEAMVAESGDSDMDLMQVXHSRLGHVGXKGIDELAKKGCFGKDKVSSLKLCEDCVFXITHKVSFGQV
QHITKEKLDSVHSDLWGSPNVPFSLXKCQYFLTLTDDWSRKVCIYFLRTKDEAFDAFVLXKKMVEVQSERKVKRLRTDNG
LEFCNHKFNDFCKQEGMVRHRTCTYTLQQNGVAERLKRTIMKNVRSMLSESGLGXKFWAEAASTSLYLINRTTSSTIDFQ
IPKERWTSAIPDMLGLRRFGCLVFIHSDEGKLNPREKRGIFTGYPEGVKGFRVWLLEDQRCMISRNVVFKEKVMYKDVIA
QEKSGMSSNXLIYLLMSVLVKMQEQIERXGLIVEWSXVQGGETTPEQNTNETTTDEIELEEVAGYAYLVIEDGGKSEQGS
FQEALEDADQDKWIKASDEEMESLMKNKTWILVERNKQQKPIGCKWVFKRKAGIAGVEGPRFKARLVAKGYSQKGXDYQE
IFSSIVKHVSIRFLLSMVTHFDMELXQMDVKTAFLHGFLDETIFMEQLEGSXDEKNLDKVCLLQRSLYSLKXSPRQWNTR
FNDFMEAHNYERSSYDSCVYFKKYADGDYVFMLLYVDDILIASKNMKHVSELKALLGSEFEMKDLGEAKKILGMEIDRNR
LKCTLSISREGYLSKLLGTFNMDQSKLVLMPVGIHFKLRSATDEEAKSQYESMRAVPYQSVVGSLMYAMIGTRPDLAHSI
GLVCRFMSKPLKEHWQGVKWVLRYIQGSLKRKLXYSNKGDFIIXGYCVLDHGADQDGRRSTSGVVFTVXGNVVSWRSSLX
KVVALSSTEAECMALTDASKEAVWLLGLMNELGFEQEAVDIYSDSQSAIALAKNIVHHEWTKHIEIKYHFIRELIYNGLV
RMKKIAIETNPADIFTKVVPVGKLQEALELLRVTEN
>ATCopia43#LTR/Copia 63-5123 [Arabidopsis thaliana]
MEPTDVSTGTGKVLLLDTKRYGYWKVRMTQIIRGQGEDAWTAVEEGWEPPFDLTEDGFKITKPKANWTAEEKLQSKFNAR
AMNAIFNGVDEDEFKLIQGCKSAKQAWDTLQKSHEGTSSVKRTRLDHIATQFEYLKMEPDETIVKFSSKISALANEAEVM
GKTYKDQKLVKKLLRCLPPKFAAHKAVMRVAGNTDKISFVDLVGMLKSEEMEADQDKVKPSKNIAFNADQGSEQFQEIKD
GMALLARNFGKALKRVERGQNRDSTSWSNKDGERSRGRFSRSENDDSGKKKEIQCYECGGFGHIKPECPVTKRKEMKCLE
CKGVGHTKFECPNKSKLKEKSLISFSDSESDDEGEELLNFVAFMASSDSSKVMSDTDSDCDEELNPKDEYRVLYDSWVQL
SKDKLQLVKEKLTLEAKLANVSTEDKQKLSGITVDGNSQDYYQKKLDCLQEECHRERDRAKLLERELNDKHKQIRMLNKG
SESLDKILAMGRTDSQPRGLGYQGYTGKINKEEGRVINFVSGGSTSETVVRQSYTEPKKQVKSHVETKGESVVRTRMVGV
ICCDHCGKRFHMREQCYKFKEKVRTLWNLAKCYIEPSRFCTVWIKKKDLYGDMEAERYNHKLERMYEEEEMHYASCCNQV
NKEMQDEANLVCNWNLSELDDCTPQAKVAYTSAVSQDNRAWYFDSGCSRHMTGVQSVLNDFSVITNGKVTFGDGGKGSIK
GKGKIEIDDQPHLSNVYFVEGLTANLISISQLCDDDLTVTFTKTGCVALDIAGNNVLSGVCSGNNCYMWKDSEVCLSAIT
SKLDLWHQRLGHMNTQSLVKIVNADVVRGIPKLEGSTSVVCKACSQGKQVKVQHKRATHIGTTSVLELVHMDLMGPVQTE
SLSGKKYILVLVDDYSRFTWVRFLREKSEAAESFKILALQLQTEKGNLVQIRSDHGGEFQNEEFEKFCRIQGIRHQFSAP
RTPQQNGVVERKNRTLQEMARAMIHGNNVSPRFWAEAVNTACYIVNRVYVRPGTSTTPYEIWKGRSPNLCYFHTFGCVCY
VLNDKDHLGKFDARSDEGIFLGYATNSMAYRVYNKRLKRVEESVNVVFDDKHPTRLFTVEQDDDEQVEETRHSTSLVESG
TSKDVEQTTEPRTSSSRLTVPKSHSETDVIGELDGDRVTRGIKMNYRDMILFTCFVSSIEPNNIEIALEDEFWYQACHEE
LNQFSRHEVWDLVPRPVHVNVVGTKWIFKNKTDEEGNVTRNRARLVAQGYSQVEGIDFDETFAPVARLESIRLLLGISCL
LKIKLFQMDVKSAFLNGVIQEEVFVSQPKGFEDSNFPDHVYKLKKALYGLKQAPRAWYERLTLFLIEKGFKRGSVDKTLF
ILVDEKDILIVQIYVDDIVFGSTKQKLVSDFVESMTKEFEMSMVGEMNYFLGLQIKQTDEGVHISQSTYAKGLIQRFGMQ
TAKTSKTPMSATAKLSADEAGLSVDEKLYRGMIGSLLYLTASRPDLCFSVGVCARYQANPKQSHLNAVKRILKYVKGTTD
VGLFYSKQTNQNLVGFCDADWAGNLDDRRSTTGGCFFLGNNLVSWHSKKQSCVSLSTAEAEYIALGSCCTQLLWMKQMLL
DYGMTSNTLLVYCDNMSAINISKNPVQHSRTKHIDIRHHFIRELVENKIVEISHVSSEKQLADIFTKPLDLNSFLNLKKS
IGLSEY
>ATCopia41_env#LTR/Copia 3976-4899 via tfasty with ATCopia42_env, 1 stopcodon. [Arabidopsis]
MKSLLSGLQRLVQxKAESASSADMFGAQSSDSLPEISRPTATECQEVKSDEALTEPNPDWALVLVKDPSPPLIIEVEDET
LPSIDSVQNPKPKDPEATPSQPSVASRLRKRKSSAADPRIKRMKQGKGVTGSSSFDGIRFVSTEAEKRYAQFSQRNFIEE
VELSRKTNEAAREFIKQAGLIRTVTKFNPFTQNLVFEFWANLPTMKVDTYMVKVLVRNREYELSPGKINEMYGLPSVDAR
QQRMDIAGLVDEQVAEFLTGGKVSVLSKLQVSAFTPTSLELFKLCCSNSSPTSNAGYAQPDRLYITFL
>ATCopia47#LTR/Copia 14-4299 [Arabidopsis]
MANQSMELYSYPVLNISNCVTVKLTERNYLLWKTQFESFLSGQNLLGFVNGATKSPDPVSAVTNIDGVVTEIPNADYSAR
HRSDQVVKSWILGSLSEDILEEVITESTAQQVWEGLARYFNRVSTARLFELQRKQQTMCKHDTPMIDYIKGIKNICEQLA
SAGSPVKEQMKFFAALNGLGREYEPIKTSIEGSMESTPAPTLDSITPRLTGFADRLKSYEVVSVTPHLVFTADAPDAGNY
YQTNYSGRGNFSGKGNRGRGAYNTKGRGFHQQTTTGSSMSGENRPVCQICGKLGHPALKCWHRFNNSYQHEELPSALTAM
HITEVTEHNGQEWFPDTGASAHVTNSHQHLQQSRPYNGSDAVIVGNGEFLPITHTGSTNLSSTSGKLPLKDVLVCPDIAK
PLLSVSKLTRDYPCSFEFDCDGVRVHDKGTKRLLILGTSKDGLYVLKNTPIQAFYSTRQQATSDEVWHMRLGHPNPQILQ
YLSKINAIKINKSSKSMCEACQLGKSSRLPFSLSTSVTTKPLQRIHYDLWGPAPIVSGQGFKYYAIFIDNYSRFCWFYPL
KLKSDFFTVFINFQALVENQFSTKIQSFQCDGGGEFTSNQFVNHLQASGIKQLISCPHTPQQNGLAERKHRHIIELGLSM
MFQSRIPQKYWVKAFFTANFLSNLLPSSVLDAQKSPYEVLLGNAPDYTSLRTFGCACFPTLRDYTQNKFDPRSLQCVFLG
YNEKYKGYRCLLPSTGRVYISRHVLFDEQVFPFATLNKEVTSNLQTPLMQAWQKSFQVLPTTSPQPASPLFSETDFPPLP
IRIPEQSTVRSEGRSGCTTGLDPASIGNSLSLIPQRMDSSESTSTSSEIPELAIVTQPTEESTENPAASTTTSTQTESDT
PATAQHPMVTRSKSGITKPNPRYALLTHKVSYPEPKTVTSALKDPGWNGAMTEEIGNCGEAETWSLTPRTPEMHVLGCKW
VFRTKLNADVSLNKLRARLVAKGFNQEEGIDYLKTYSPVVRSATVRGVLHVATIMEWEIKQMDVKNAFMHGDLTETVYMT
QPAGFVDPDKPNHVCHLHKSIYGLKQSPRAWFDKFSTFLLEFGFTCSYPDPSLFIYIKNKDVILLLLYVDDMVITGNNSK
ALSNLLAELNKQFRMKDLGELHYFLGIQVQNHSEGLFLSQQKYAEDLLVVAAMSDCSPMPTPLPLQIHKESDTDDAFPDP
SYFRSLAGKLQYLTLTRPDIQFAVNFVCRKMHAPSQFDFSLLRRILRYIKGTITMGITFRKDTDCTLRAYSDSDFGGCKS
TVRSTGGFCTFLGSNLISWSSQKQDSVSKSSTEAEYRAMSEAASEITWLCSFLKELGIPLHETPSLYCDNLSAVYLTANP
AFHNRTKLFLRHYHYVRERVALGALIVKHIPSHHQIADIFTKSLPHGPFSSLRFKLGIDSPPIPSLRG
>ATCopia62#LTR/Copia 169-4614 [Arabidopsis]
MAPGRKISTRRTIRVPVSARRSANRDDSSPEGSPEPRARTRNPVTESHDSIHSPYYLTNSDNPGASITSEVFDGTNYDDW
KISIKIALDAKNKLVFIDGSVPRPPESDPMFRIWSRCNSLVKSWLLNSVSKPIYKSILRFDDASEIWNDLSTRYHITNLP
RSYPLTQQIWSLQQGTMDLTTYYTTLRTLWNELDGSDCVTLCKRCDCCKAMDKKAEHARVIKFLAGLNESYAVIRSQIIM
KKHVPSLAEIYNLLDQDHSQRSFTPVPSNAAAFIVSAPEQVQPSVNATFNNAKPQKVICSHCGYTGHTVDRCYKIHGYPL
GFKHKNKNQSDKSVSLEKSVSTVKPVVAHMALTDSTTNDLINGLTKVLTKDQINGVVAYFNSQMQNSSIASSSGATITAL
PGIAFSSSTLGFIGVLKATVNVLSSETWIIDSGATHHVCHDKNLLMRLSETMNSSVTLPTGFGVKITCIGTVKLNEFLVL
NNVLYIPDFRLNLLSVSQLTKDLGYRVTFDEDYCLIQDHVKGLMIGRGEQINNLYVLDVPRIKDFPTKEISFHANIVVDS
SLWHSRLGHPSVTTSDIVTDVLGFKQRNERSFHCTICPLAKQKRLPFVSKNHVCDSAFDLVHIDVWGPFNVPTPDGFRYF
LTIVDDHTRVTWLYLMKNKNEVLTIFPDFLKMIETQYKSQVKGVRSDNAPELKFVKLFKEKGIIHYFSCPETPEQNSVVE
RKHQHILNVARSLMFQAQVPVEYWGECVLTAVFLINRLPTPLLHDKSPFEVLTNKMPDFNGLRVFGCLCYSSTSTKNRDK
FQPRAKACVFLGYPPGVKGYRLLDLETNIIYVSRNVVFHEDIFPFAKSGSTVLPDYFATETSNVDASSTEASTSEAPAVV
NDSVTPSNINPVVVSESPTDTNDIVDSTIPAVSSTDKTSKGRTSKTPAYLQDYYCNLSTNGVEHPISNFLNYDGLADSHR
AYICSITKYAEPTSFTQARKSDDWLKAMNDELKALEGTATWKICSLPPDKHAIGCRWVYKVKLNADGSLERYKARLVAKG
YTQQEGVDFVDTFSPMAKMTIVKTLLVVAAAKKWSLHQLDISNAFLYGDLEEEIYMTLPPGYTTKEGETLPPNAVCKLQK
SLYGLKQASRQWFLKFSTTLMLLGFQRSQADHTLFVRNVNGKYIAVLVYVDDIIIASNDDAEVVELKADLERAFKLRDLG
TLKYFLGLEIARNASGISVCQRKYALGLLEETGLLACKPSNIPMEPSIKLISDGDEPPMEDPASYRRLVGKMMYLTITRP
DITYAVNRLCQFTSAPKESHMKAAHKVLHYVKGTVGTGLFYSADCDMTLQAYTDADWASCRDTRRSTSGFCMFLGTSLIS
WKSKKQQTASHSSAESEYRAMEFAVREVAWLVNLLREFQAPQLKSVAFFCDSTAAIHIANNAVFHERTKHVELDCHILRD
KVMSGLIKTLHLKTDQQVADVFTKPLFPTQFKALVGKMALQ
>ATCopia54#LTR/Copia 142-4091 Wised via estwise with SC-8 protein [Arabidopsis]
MLNATNYTGWAIRMEITLSIHKVWEVINPGSDDVDKNLMARGFILQPIPETLTLQVGNLNTTKKVWESIKTRHVGVERVK
EARLQTLMAEFEKIKMXKEHIDNFVGRLSELSTKSAELGVEIEVPRLVKKFLNGLPRKRYIQTXLDLNNTRFEDIVGRMK
VYEEXSWXVGDEQDDXENSCKLILIHNPIKITASRGRGQRGRFGGRGRGRGRNTRDKSKIMCYRCDKIGHYASNCPDRLL
KLQEACANXEEETQEADELMIHEVVYLNEKNVKLLKXQSDGDNVWYLDNGARNHMTENRSYFSKIDESITGKVRFGDNSR
IDIKGKGSILFVSXVYYIPDLKSNIISRGQATKAGCDVRMKENYLTLYDRDGKLLVKAIRSKNRLYKVTMETEAKKCLQL
NLIDDSSIWHSRLGHVGLNTXEXMMNKELVVGLPKITVEKETLASCSLGKXVRRIFPQATSFRASRLLELIHADLCGPIT
PMTAAQNRYIFVLIDDHSRYMWTVLLKEKSQSFDKFKKFKALVEEETGAKIKTLRIDRGGEFTSHEFQDFCDKSGITXIC
DKSRITRHITAPYSPQQNGVVERRNRNLLEMTISIMKHMDVPNYLWGEPVRHATNLFNRVAIRSLVKQTPYEVFKGRRPN
IEHLRVFGCIGYAXTESPQLKKLDDRSRRLVHLGTEPGSKAYRLLDPSRRRIIVSRDVVFDESKNWSWNETKNXQVRAHE
XFKVSFGNNGIENEDSVQETEENGADENNEGSVEEEEDIPNDNDQDEQTNEVILRRSXDNVIXPNHQDDYILFAELEVEK
LLMTISEEPWDYIEAKELKVWRDSCRRXMSITKNKTWDLVELPVGVKAIGLKWVFKLKQNSDGSINKHKARLXAKCYIQR
HGIDYDEVFTPVARKETIRLMLVLAASHGXQVHHLDVKTAFLHGELKEEVYVIQPEGFVTRGSEEKVYKLNKALCGLKQA
PRAXNHKLNSILNELKFVKCPKEPSLYQKQDKDKVLLVAVYVDDLLISGFSLKLILEFKKEMAKKFGMSDLGLLTYYLGL
EYXQHEGGITLKQEKYASKILSETQMEECNVVDIPMNANLKLSKAHDEKNIDEKEYRRNIGCLRYLLHTSPDLSYSVGVL
SRYMHEPKESHGAALKQILRYXQGTRAYGLSFTQKNEAKLIGFSDSSHNVDEDDGRKTICHIFYLNKCLITWCSQKQDNV
ALSSCEAEFMAATEAAKXSTMTSRXLGEINGKPCEKMLILLDNKSAIALTKNPVFHGRSKHIHKRYHFIREFVTNEQVEV
EHVPRKRPKADILTKALGRIKFKEMRELVGVQDVSK
>Rex1_FurC_pol#LINE/Rex-Babar 36-3143 [Takifugu]
QLPTLNCSFLNFRSVCYTCLHSFLFGIYFLSFHLQLEYSDTMFWRLEYFFLCFAVLGLFAAPISCAEKRTGIVYTRDQLM
ALRPPSFVVGEKPQIPKELRRKRRGSKAGVKQRMKRRRFKPCVPAVITGNVRSLANKMDELEALTRTQREYREASIMCFT
ETWLHGLIPDSNVTIAGFSTVRADRDTTAAGKKKGGGLAVFISNRWCNPEYIHVKERVCSPDVELIAIGLRPYYLPREFT
NVIAITVYIPPTGKANTACDVIHSVTADLQTKHPGAFILITGDFNHASLKSTLPTFHQYVQCSRRDRKTLDLLYANVTSA
YTSTALPPLGKSDHNLVLLSPSYTPVVQQQPVTVRTVXKWSDGAMDCLRDALETTNWSALCEPHGEDLDGLTDCVSDYIK
FCTENSVPTKKVRCYPNNKPWVTSDLKALLNKKKRAFTAGDPAELRSVQKELKRSLKESKDAYRKKLEERLERNQTRDVW
SGMRTITGFQKKGIRSADGNVDQANELNQFFNRFDSSSPSPSCPNIPLDNNGSPSHLPEPLTPLPTSSPSPLLTPYIDXN
MSPIPPTGLSFTSSQVRRELERLNQRKAAGPDGISPRVLKNCSRQLCGILQHLFNQSLHLQRIPVLWKTSCLVPVPKKTH
PVAPSDYRPIALTSHIMKVMERLVLXHLRPLVSPFQDPLQFAYQPKVGVDDAVIYLLQRAYSSLDRLNTTVRVMFFDFSS
AFNTIQPRLLRAKLENMQMDAPLVSWIEDYLTGRPQFVRLRSCVSDPLMSNTGAPQGTVLSPFLFTTYTADFQYHSETCH
LQKYSDDTVIVGCVENGQEDEYRDLVESFVRWSRENLLQLNVTKTKEMVVDFSKSKSPPSPVCISGKDVEIVPSYRFLGV
QLDNKLEWSTNTDAVYKKAMSRLYFLRRLRSFSVCSRMLHMFYQSVMASTIFFAVVCWGAGIKAKDANRLNKLIKKAGSV
VGCRLANLDEVVRDRMVLKLRTIMDNPSHPLHNTVDKLRSSFSNRLLQPRCSKERYRKSFLPSAIRLYNSSKPXQ
>Rex1-3_FR_pol#LINE/Rex-Babar 3-2828 Fragment. [Takifugu rubripes]
KAGAKVQARRTENRRRHKPSLPSVIMGNVNSLTNKIDELAALGNQRIYRECSLFILTETWLTATIPDANVDLRGFTAVRA
DRDTKACGKSKGGGLIIYTNNRWCNPGHVSVKAVLCCPNLELLAVSMRPYYLPREFSHVIALCVYIAPTANGATACEKIH
SVAARLQTKHPEALLIISGDFNHVTLDSTLAALHQVIDCPTRNNRTIDLLYTNVKEAYRVIALPPLGKSDHNLVYVQPQY
TPLVQRQAASTRSIRRWTPXAEEALKDCFNTTDWDVLLGEHEEDIDGMTDRLTDYLNFCVDVVVPTKTVQCYPNNKPWVT
QEVKDVLNKKKKAFRNKDREEMKEAQREVKRCLKEAKNTYRKKVEKKLADNNMRDVWEGVRTITGHKAKTSTEGGGVERA
NDLNQFFNRFSQPTPLQSSXXXXXXXXXXXXXXXXXXXXXTTPIPLLSPSPHPPCIPLLSPSPHPPCFTADQVRGELRKL
RPRKAAGPDRVCPRLLKTCAAELGEPLQRVFNLSLELGKVPTLWKTSCIIPVPKKNRPSELNDFRPVALTSHLMKTLERL
FLNLLRPQVQHAEDSLQFAYRDKVGVEDAIIYLLHRVHSHLDKGSGTARILFLDFSSAFNTIQPLVLQDKLLQMRVDPCL
VAWISSYLTDRPQFVRMKDITSDTVVSSIGAPQGTVLSPILFTLYTSDFCYNSEMCHIQKFADDTAIVGCIRDDZEEEYR
CLVRDFVAWCHNNGLQLNTSKTKELVIDFGRDRPRPRPVQIGTEEVEGVQTYKYLGLWLDNRLDWTSNTRQLYKKTQSRM
YFLRRLRSFNICRKLLWMFYQSVVASVLSYAVVCWGGSVTKADLSRLEKLIRRASSVVGMKLKPLATVAERRTIDKLRSI
MDNVRHPLHTVIHSQRSLISQRLRLPKFRTNRLGNSFIPRAIRLFNSSLGGRRANRRTGTFL
>Expander1_Cis_pol#LINE/RTE-BovB  363-3191 [Ciona savignyi]
MKVDIIGVTETHWTTQNPTMWEQDNYVIIHSPRKDGTHRQGVAVAXRKELLSNLISYKCVSSRLMTMTIHLNKKVITFFV
AYAPDSSYDDSQNEEFYNIIQSIINALPRKNEIILLGDFNASVGADKCNNWSDVMGKYGHGDMNERGLHLLQFCAINELI
ISNTIFKHKSGRRYTWTSPDYTFKKQIDYIIMSKNLKASIKNSRAYQSAEIGSDHSLVIANMIFRIEKEPKRVKNPKIKK
YDYDKLKNGDIAKAFRKSVGSRFATLLGQTTEHEPESXYCKMTSILKDAAEREIGFKQHKTIPGLSIEVVKLCEERREAK
IKLLSEPNNSLLQSIFTSLNKKVKKAVRRQKEENLHQKICEMEEAFKKNNSHKLFDCIKNLERKKPKPFFGIKDTNGVLQ
VEKKKVLDVWKSHFELHLNTEFPRDENALMEFNDSHPNDEEIQPITMEEVNNAIRQLKNNKAAGIDGITSELIKAGGYIT
SKMFVSLFNGIIKSEKMPKDWSKMIVTPIFKKGDKLDPKNYRAIALLSIPGKVFCKILMNRCMEKTEQYLSKSQFGFRSG
KGTVDAIFIVRQIIEKAREHNVNLHLNFIDFKSAFDTIWREALWKIMLHVGISRKIVTLVRILYKDTTCTVQIDGQQTDF
FPVNIGVKQGCIMSPMLFNIFLDYVLKEVKSLDSXFDFNDSMLIDIRYADDTTLISAVFEKLQIATSELAKACRKWGLKI
NPSKCAVLSAENGRIQLENDTIPNVDRFKYLGSIVPECSEDIRNRISLASQAFGRLRSNIWSSHHISRKLKIRLYRALIL
PIAIYGAETWSTTSSDMNSLKVFEMKCLRAILNVTRRDRIRNVDLRKILRVEETIEDVVNARRLRWFGHVARSSESSLIN
LSFRKDFQCKRRRGRPRKRWRENIRDLCGIPLATAERRARNRSKWREDVVRWTARGHHALCT
>RTE-1_Gav_pol#LINE/RTE-BovB 261-3930 via tfasty with RTE-1_Crp_pol, 4 frameshifts and 2 stopcodons. [Crocodylidae]
PCHRVQISIFSRSCGCCFHAPASSFKQSHVXASTTENNTLSCTDLQKPCGDEPVVTDDxxIRQSPAANLHAGXGSLMVVL
HLELRQERDSAAATVTEQSYSGSLPLTPHGEGARKGALNLGCLICSWLDNRVQRDHSXCRKHHKKTMIFATWNVRTLMDN
QXNERPERRTAVVSRELVRYNIDTAXLSETKRPDEGQLREEGGGYAFFWKGKPAQDRRVHGVGFAIKNQLISQLMELPVG
INERLMTLHLKLSNNQYATVISAYAPTLDADDDVKEQFYSNLDHVLTNTRKEDEIILLGDFSAGVGRDLELWSGTIGKEG
VGKANSNGILLLSKCAEHGLVITNTIFRQSDKYKTTWRHPRSKHWHLLDYVIVRARDRMDVRITRAMRGTDDCWTDHRLV
RSIMNIRLAPKHRKQPKAMRRTLNTKSLQDPKVCKDLQQCLHEKLSALSANEGNVEELWKGFKTAIHMACAESIGYTTRR
HQDWFDESDAEIQALLDRKRRAHSAWQDDTSSQQKKETYQLLKAEAQRRIREIKNQWWQDKAKEIQLYADKHDMHSFFRA
TKAIYGPTSHGPTFLRSQDGSTLLKDNESIQARWKEHFEALLNRESTVADTTIESIPQHPERGSLANPPILEEVWRAIKE
TKNNKATGPDGIPAEIYKAGGEELVLRLHEFIXRIWNNEEIPGDLRNANIMTIFKKGDKSVCGNYRGIALLSTAGKILAR
ILLNRLLPLAEEVLPESQCGFRPSRGAIDMIFVARQVQEKCREQHQDLYMAFVDLPGTTSGPVYGLIDLTKAFDSINREA
LWKVLARFGCPEKYIKVLRLLHDQMTATVLCSGSETDPFVIRTGVKQGCVIAPTLFSIFLTVILVLIKDRLPSGIDIEYR
TDGGLFNLGRFRSKTKVLKTTILDLQYADDCAILAHTEENLQTALDLFGEAYRTLGLSLNIEKTKVLYQPAPGHECDPPP
QITIEGKTLEVVEHFPYLGSHLSQRVNIDEEIQHRIRCASASFGKLLRRVFIHRDLRKDTKIQVYNAVIIPTLLYGCETW
VTYRRHLKSLERYHQRCLRKILHIKWEDRRTNASILAEANVTSIESVILKHQLRWTGHCVRMPDSRLPKQVLYSQLSNGL
RSRGGQRKRYKDTLKAYLKKTDADIKSWEELAADRLQWRRNLNQAAARFEVKRLALEAEKRERRKEKERNPSLQPTLPCG
KTCNFCGRICGSRIGLLSHLKTHQ
>RTE-1_AG_pol#LINE/RTE-BovB  373-3291 [Anopheles genus]
MGSWNVRTLSEAGALKKLDDALATLSMDLVALQEIRWLGNGVHNRRGKHCYDIYYSCHDRHRVLGTGFAVGPRLKPAIMD
FKAINDRLCTLRMRGKFFNISLINVHAPTEDKEEEEKDLFYGRLARIVDACPRHDLIIILGDFNAKVGREPMYRQYTGCH
SLHEHSNDNGSRLVQFAAANNLVVGSTKFARKKIHKITWAHPGGESFNQIDHVLISRRRQSSLLNVRTYRGANIDSDHYL
VGLVIRCRIARPRANGGGENTQARLNTDSLRDIAVQQEFKTALEESLLPEDRYETTSERWNALKTKIINCARNILPPRRG
NTKSGWFDDECRQVTERKNTAYRAMQQRHRTRACAEEYSRLRREEKRVHRSKKHALEEQNMRELEQTREAYGPTRKFYQA
IAGHRNNVVPKVTCCRNKDGDLVSNQPEVLSRWAQYFDELLNDQFSEQLEAPLADNVMLLPPSIEETRKAIRRLKNNKAP
GTDGIAAELVKNGGARLENEIHQIVTEVWDSESMPCDWNLGIIYPIYKKGDRLDCNNYRGITVLNTAYKIFSLILQDRLV
PHVEEIVGNYQRGFRNGKSTTDQIFTMRQILEKMAEYKNDTYHLFIDFKAAYDSIARVKLYDAMSSFGIPAKLIRLVRMT
MTNVTCQVRVDGKLSGPFATTKGLRQGDGLACLLFNLALERAIRDSRVETTGTIFYKSTQILAYADDIDIIGLRLSYVAE
AYQGIEQAAENLGLQINEAKTKLMVATSADLPINNPNLRRRDVQIGERTFEVVPEFTYLGSKVSNDNSMEVELRARMLAA
NRSFYSLKKQFTSKNLSRRTKLGLYSTYIVPVLTYASETWTLSKSDEALLAAFERKMLRRILGPVCVEGQWRSRYNDELY
EMYGDLTVVQRIKLARLRWAGHVVRMETDDPARKVFLGRPQGQRRRGRPKLRWQDGVEASAIKAGITDWQTKARDRERFR
TLLRQAKTAKRL
>REX1-3_AFC_pol#LINE/Rex-Babar 8-2861 via tfasty with Babar_pol, 1 frameshift. [Cichlidae]
MAPRMDALVLQCVTFVLFLCISSVSGHSSGYSYTREELLNYRTTTPVDLFPIFVASAADLLLTLIRKVRRRKRGKRAGAL
VRLRRRGLRTALPGIFLSNVRSLGNKIDELALMRSMNRDFASSCVLCFTESWLSEDIPDCALKLEGFHLLRADRQAALSG
KTKGGGVCFYINSGWCTDVTVIAQHCSSSLEYLFIHCKPFYSPREFASFILAAVYIPPDADAQAAQCALAEQILHMERTF
PDSLIIALGDFNKANLSHELPKYKQYIKCPTREERTLDHCYSTISGAYRAVPRASLGLSDHVMIHLIPAYRQRLKLSKPV
VRTKKLWSNEAVEELRTCLESTDWDTMKAASNSLDEFTDTVTSYIHFCEDSIVPSRTRVSYNNDKPWFTPKLKKLWLEKR
KAFRSGDRDCYREAKYRFTKEVDIAKHQHSEKMQQQISENDSASVWKGFRNITNYKPKTPHSTDDLLLANTLNDFYCRFD
EPSGSLHTSNGPNNRGTLDTHSPTSPPSIEPSPPSNCSPTTPPSSPHTKEDFTPPPPTTTLHIHEADVRKQFKSLNARKA
PGPDGVSPATLRHCANELAPVFSGIFNSSLQACHVPACFKSSTIIPVPKKPRITGLNDYXPVAXTSVVMXXFERLVLSHL
KTLTAPLLDPLQFAYRANRSVDDAINMALHFILQHLDSPGTYARILFVDFSSAFNTILPDHLRGKLSQMNVPDPICRWIT
DFLTDRKQHVRLGKNVSDSRTISTGSPQGCVLSPLLFSLYTNCCTSTHQSVKLPLILTDTPITSVDSFRFLGTTITQDLK
WEPTITSVIKKAQQRMYFLRQLKKFNLPTRTMMQFYTAIIESILTSSITVWYAGATIRDKQRLQRVVRSAEKVIGCRLPS
LQDLYTSRTLRRAARISADPSHPGHSLFDLLPSGRRLRSIRTRTSRHKNSFFPSAVGHMNNNHMTVPATNT
>CR1-22_HM_gag#LINE/Rex-Babar 216-1280   [Hydra magnipapillata]
MELSNETRKKVLEEMYSVYKKETELMFKEQEKNLISIISANTKMTNDRMAKVEKDTHKNAKIIKSLENKVASIVESLNFH
KELFDRKIKTLSDSHEKDNVLSKGAIKTYNDNVEVMNNTNIESVRILNTRIDELNKKLKSAPLSNKLESFATILKGKSAE
EVQHRHRLINIVTAETENRQNRASNVIIVGLPKSDDYDNIIAANKFFNACGVDSAKIGYISRIKSSKINNTIHNSNIVKV
SLINEQSRSEVLQKCSHHNIAEFKGIFCREDRTRSQQEAFNELRSKMKKLNDELYAADVLDKPFRNVIHKRTGEICCIDV
QKSNELHKYVFASPASTLAPHRKRLLTTVQTATT
>CR1-10_NV_pol#LINE/Rex-Babar 1-3111 [Nematostella vectensis]
MYEMWSVLLLTLSQFAVWPQLLFSSLCWRNFPQRPSELLSRHPGQGTNPRKCYSSSTLKAFRKSSTSSRLSDDLWMELKD
LGILKPYRSRRKRRKQRTRPCVNESDANEAGTVSVNPPRIKASLPVTLLANEAGTVSVNPPRIKASLPVTLLANVRSLHK
KVDELHSIAESTKPGIICLTETWLDSSVPESAIHLGNYVCFRRDRPIGQCGGICAYIDSHLPCKRLLEFENPDIEALWVS
IRPFRLPRSVSNILVGIVYHPPHCGSEENSRLIEHISINTESFLTKHPDGMILVTGDFNPPSTGIKASVIKQKSGLSQIV
TVLTRDSGMLDWVLTNKPKLFQSPIQLPKIGKSDHYAVLIKPIGALGTIKSSTETISRRDMRPSCMDAFGRWITGYNWSY
VLDAPTADAKCRLLYSVLQNAVDIYFPAKSIKVCLTDKPWVSSRLKGLVTKRQRALRIHGKDSPIFKRIRNSVKELVKNC
KHNYYSAKVASLKDTNISRWWCEVKAIGGLSSTSEWWHQLLSEDTPTIESLCDQFNNLLYSLTSHFAPLDISSLADENLY
VPPGFLVTDEKAYKALRSIKSNKSPGPDQVPSRVWKEFAFELAPIVSDLYNSSLREGRVPEILKTSLVIPTPKVTPPKTV
EDDLRPITLTSPLAKILEGFTLEHLMNQVAENLDIKQFSMPGRSTTHALVYMLHIILAALDKGNCFIRVFFADFSKGFDL
VDHNALVNEMKLLNVHNVIIRWICCFLSNRPQRVRVGNALSSVVVSNGGIPQGTKSAPLLFAILVNRMLARWPNRVKYVD
DTTVFEIVPRCSPSYIQFIVNDIKEYASSRGMRLNPKKCKELQINFLKYQPSVPQRLILGSAVVEKVEHYKLLGVHISAD
LSWNVHVDHIVKKASKRLYALRVLRKAGVQQSDMVLIYCSLIRSVLEYAAPVWASLPEYLAELIETVQRKAIRIIYPCLS
YESGLKVAKMDSLTVRRAELCRRFMAKARCTEPIKYIIQSGTEVAHGYSLRGGCSRLDKSVGVTERYNNFITIRFQ
>CR1-22_HM_pol#LINE/Rex-Babar 1201-4290   [Hydra magnipapillata]
MSLPPQQAPLHRTANVFSQPCKLQPHNISPIPQTKAKRKQHLPNNSLQDLQSQATSPRLKLPSINFFRFWANNPCSLNSE
KLHELVARLTSIDKSEWPHVIFFSETWFSATSDTTIAGYQLHNTDRDGRGGGVAIYIIDGLANSKVTDVTLTSTSVEQIW
HIIHFENESILLGCMYRPIDKNDDTLTQILASIKAAQQILPKLKCSTMLLYGDFNFSHTSYKSCNVGGGVETTAHVTEQR
PGDIKFQECLKDCYLTQLVTFPTYRNNMLATPCSTLDLIITNNPDRLISINEGNSLGHTPMGKAHCLLVGLFAVYFNKNK
LTSPSRRRLIWSKANFDAISLHITSKEIPTNLSANDLYSWFIDVYNEAVKLHIPSTTTPFKIKQDLWVTPKVLEAVKLKR
STWAKYVAAGKDSHAKLRNEHQAACKHVKKVVNAAVLHYEQQLVSSFKEFPKRLYSHVKNKLKVHNHISMLETSDDNITE
DSKFITSTINNYFHSVFVEEPPTPLPIFEERTKSTCEIDESLFTAATVQNYLFCLDDTKSMGLDGVHPRVLKNCAKAFAI
PLSLIFKQSFQTGNVPDLWRKSNVTPIFKKGNKLKACNYRPVSLTSVPCKVMERIIKERIMKHCTLHNLISKSQHGFVNH
RGCLTNLIESXDILTEAAYRGHIVDIIFTDFAKAFDTVPHKRLLHKIQAYGIRGQLFHWISAWLSERKQRVVIGEQTSEW
KRVTSGVPQGSVLGPLLFVLFVNDYPDGISNYTKLYADDSKIIGIINNNQSSSDYETLQTDIDNAVSWSHKWLMHFNIEK
CKVMHVGCRKNKSTHTYTMADINGNRHNLSPTCIERDLGVLISDNLKVKAQVEAAASAGNRMLGRLKKTFRCRSLQLWKK
LYQLYVRPHLEYCVQAWSPHLKSEIVLLERVQKRATKVISSIKHFNYEKRLQLLDLTTLEERRIRSDLILQYKIAHQLQE
VKFYIPQAQPFLLNSRYNLRRNSRCLKPQLIKRNSERQHFFTNRVTNRWNKLAQNVVDAPTVHFFKKHV
>Rex1-1_PM_pol#LINE/Rex-Babar 2-2944  [Petromyzon marinus]
MAAHTVAAAQCLPGRCLVWLFMYALCLVLCTFCRASNTFSRHDLLKIGLCYERSVTSEFLRLHKIPVELARSPGSPWIII
PAGRRRRRRRERRQKRGCRAGALARLRRQPLKPPLPSLFLTNARSLANKMDELRLQTTANNVVKDSCILLFTETWLHSSI
PDSAIELAGYTAQRHDRTVDSGKSRGGGLCVYVNNSWCTNTVTVDSHCSPDLEYVTVKCRPIYLPREFTVVMITAVYIPP
DANANSAIGLLHGSISIQQSKYPDAVQIIAGDFNHADLKAALPKFHQHVKCATRGTKTLDKVYTNIKLGYRARPLPHLGQ
SDHLSLLLIPAYAPIKKTAPTITKTVATWPEGATQQLQDCFDRTNWGVFEHQDLEVFTDSVLCYIKNCIDTVTVDKRIRV
YPNQKPWMTREVQQLLKERNIAFKSRDKALYSTARANLKRGIREAKADYRRRIEERLDSNDSRQVWQGVQHLTNYRANLG
AADGDTALAEELNLFFARFEVTPPGTASPNPTVHSSLNLTVEEHEVRRTLRAVNPRKAAGPDGVPGRVLRDCADELAGVF
TRIFNLSLEQSTVPPCLKSSTIVPLPKKTHISSLNDYRPVALTPVVMKCFEKLVRSHIIATLPRSLDPHQFAYRANRSTE
DAVATALHAALSHLEQQGSYVRMLFVDYSSAFNTILPHKLVVKLGDLGLPHSTCMWIHSFLSGRRQRVRVGRHTSTALSL
STGSPQGCVLSPLLYSLYTHDCAPVHHSNTIVKFADDTTVVGLISGGDESAYRDEVERLTAWCRGNNLLLNTAKTKELII
DYRRKKTDTPPLTINGDCVERVADFRFLGVHIGEGLTWSANTSELLKKAQQRLYFLRILRKNNITQKLLVSFYRASIESI
LTYCICVWYTSCTVAQRKALQRVINTAQKIAGCPLPTLEELHSSRCIKKAQNIIKDSSHPGHSLFELLPSGRRFRSVKTR
TNRFKHSFYPTAITTLNTAN
>CR1-26_DR_pol#LINE/Rex-Babar 106-2939 via tfasty with REX1-1_DR_pol, 1 frameshift. [Danio rerio]
MHYQHIADKLAGSCNLRQTFRIYQFYSTGLTTHCPLPQPLQRRRRKRHKRGKRGGLHARLKSRANRPPLPSILLANVRSL
DNKLDELRARITSQREVRECCALIFTETWLSEKVPGTAVQLQTHSLHRGDRTTASGKAKGGGVCVFINNSWCGDVQTVHK
HCSPDVEFLLLKCRPYYLPREFTAVFIAAVYIPPRANATAALGKLFNVFNAQEMAHPDAVIIAAGDFNQCNLRTVLPKYH
QHVSIPTRENNTLDNVYSNIRGAYRAAPRPHFGQSDHISLFLYPAYRQRLKQTNPITKLVKIWNPQTESTLQDCFALTDW
DVFKTAATKEDLSVNVQDYAEYVTGYISTCVENIIPTIQVKKFPNQKPWINSKVRHMLNARSLAFTSGNENEYKSAKYGL
RSAIKEAKRQYKEKLDNTYSTASAGQMWRGLQHITDYKSTTNVTISASESLPDDLNTFYARFESSSINTEQRHTQTQTSQ
PALPPPAVTPAAVHKALRKINPRKAAGPDNIPGQALKACASELVDVFTSIFNLSLSQSSVPTCFKTTTIVPLPKKSPLTC
LNDYRPIALTPIIAKCFERVVLPLIQSSIPDTLDPLQYAYRTNRSTSDAIAAALHTSLSHLEDKDTYIRMLFIDYSSAFN
TVIPHKLTHKLSELGLHPTLCDWLLDFLTGRPQSVRIGNKSSSTILTNIGTPQGCVLSPILYTLFTHDCVASHKNNTIIK
FADDTAVIGCITGGDEAAYRKEVASLVTWCENNNLTLNTDKTKEMIVDMRKERRTHQPLFIRKLEVERVSSFKYLGVHIS
EDLTWTLNTTQLVKKAQQRLYFLRKLRKLGLSSKILSNFYSCVVESILTNCITVWYGNATEKDRKRLQRVVRTAEKIIRS
PLPSLQTIYHHRVHKRTASILKDPTHPQHRLFTLLPSGRRYRSVRCRTARLKNSFFPSAIRLLNR
>RTE-2_PM_pol#LINE/RTE-BovB 493-3875 via tfasty with RTE-1_DR_pol, 1 frameshift and 2 stopcodons. (all between bp 545 and 665; perhaps this is the end of gag) [Petromyzon marinus]
MGATGCHRRWEGSLHPNGxLPPASSWAAPGQxGAFPPRLTCSNGCLELMVHHQTSGLQPPAPDKSKTKRKKVPALHFASW
NVRTMCSGLSEDLLQIEDIRKTAVIDRELARLHVDIAALQETRLAGSGSLRESDYTFYWQGKQQNEPRQHGVGFAVKNTL
LGMIEPPTAGSERILLMRLLTASGHVNILSVYAPTLYSPPEIHDQFYEELHNIIRKIPSSEHMFLLGDFNARVGADHDAW
PACLGYHGIGKMNASGQRLLELCSYHNLCITNSFFLTKPCHKVSWRHPRSLNWHQLDLVITRRALLNSVLITRSYHSAVC
DTDHSLVSSKVRLRPKKIHXLKQKRYLRINSAKXSLPELTQSFQHSLEQSLHDTPDGSVETKWAYIRDAIFNAAINTFGK
QTRRNTDWFEEHLAILEPILQAKRMALLKYKQVPSTGSLRALKAARSAAQTTARRCANNYWVNLSSRIQLASDTGNIRAM
YEGIKTAFGPNIRRTAPLKSSTGAIITDKQEQMARWVEHYSELYSRDNGVSEAALAAVKPLPTIHELDNVPTLKELDNAI
NSLASGKXPGQDGITPEVLKCAKPAVLTKLHELICQCWEEGAVPQDMRDSNIITLYKNKGDRGDCNNYRGISLLSIVGKT
FARVALSRLQILAERTYPEAQCGFRAGRSTIDMLFSLRQLQEKCREQRMPLYLAFIDLTKAFDLISRGGLFKLLKVIGCP
PKLLAVISSFHDNMKGTIQHSGTTSEEFPILSGVKQGCVLAPTLFGIFFSLMLTHAFGTAEEGVFLHTRSDGKLFNLGRL
RSKTKVRKVLIRELLFADDAALTAHTEQGLQTLIDHLANACNNFGLTISLKKTNVMGQDVRDTPSINIGSYTLEVVQDFT
YLGSTITCNLSLVTEIDKRIGKASTAMFRLTKRVWENKSLTLNTKVQVYRACVLSTLLYGSESWTTYAHQEHRLNTFHLR
CLRRILGIRWQDRIPNTSVLNLANIPSMYSLLSHRRLRWLGHVRRMQDGRIPKDVLYGELASGTRVTGRPVLRFKDVCKR
DMKSCDINPNDWEKTAGDRLSWQQAVKTGLRRGEEKRHTAWQTKRERRKEKATNTSGAATAFTCNCCGKDCHSRIGLLSH
SRRCKTYS
>RTEX-7_BF_pol#LINE/RTE-X 2-2521 fragment [Branchiostoma floridae]
PKEEIEAFVSEFSKILKDAGTRSLSIKIFNKKRKTRRQNKQWFDKSCTELKREVKNLASLLEKQPSNPDIRGRFFKRKKE
YRKLTKKKKRDFHKYIMTQLSSLKDKDPGAFWKLVNKLKPGKAQENNISDEEWLKHFSSVDKLFNNTNDCPVSENDSLNS
DNDLSPPHATPSVLDSPITLEELTTAISNLKNNKSSGNDMILNEMLKSGKTILKTPLLQLFNTCLQNGYFPDEWSHSHIV
PIHKSGDPSIPDNYRGISIMSCLGKLFSSILNTRLVDYAENNRLFKPHQAGFRKNFRTTDNLFVVSTLVRKYISQNSHLF
ACFIDFSKAFDSVWRNGLIYKLNKLGIGGKFLQTIRDMYSKTTNCIKHSQGLTESYVTNCGVRQGCNLSPTLFNLFISDI
TAVFDNECEPPIMHTERIPCLLYADDLVIFSESKRGLQSSLNKLENYCNTWRLNVNLRKTKVIVFTKGGRLPRDCSFTYQ
KKPVELVTSYCYLGIIVSSAGTFKANHKHLYKKGLKALFGINQSLDKADAPISVRNKLFDACVKPIILYGFEIWGAFKTS
NSCPIESVHLKFCKQSLRVPRSSCSLAARAELGRYPMQVEASLNSIKHFLRLRLNVPADSFQADAFSCQLELDKSGNKCW
ASGVRKSLEECGYAYLWHFPIPHRTNTFQIVNSIGQRLKDIYFQTFLKEIHNDNKGGAAKNKLRSYRLFKTTYNEEKYLS
NENMRDRNAATRLRISCHKLHIETGRHTRTPLEQRLCKHCNLDRIEDERHFVVECRLYTVERNELYKVIQNQFPYFIHLS
SVEKFIFLMQLDKPSIIKHICSFISTITEKRGEVEFIQQ
>RTEX-1_CR#LINE/RTE-X 1866-5705  [Chlamydomonas reinhardtii]
WDGGRGGISVWAWNAHGLLTGGSCKLHDRNINKAARAHDILVISEAHLTHRVPDGRIELDGYSVFRAHRSQEAIRSDFGG
VAVYVRECLMGGVMHLRTDVSLTGCEVVWMRIRSKDGDSLLLGCCYLAPETSRVYKDGGKTRVAREATAEAVFGRLQQAI
SAMRQNGEEVLLVGDLNARMPAGLSDIPDLDQLAALEQVEHITALGGALTSMPSPEDYAGLPARASQDKHANCFGEFLAR
MCRSQGFVLLNGRAPGDESGRITFPKGEEGGSVIDLCIASPTLFQSVTSVDVGELLRWARRGAGYASDHRPVTLTLSWEV
EGQASTEGQAKAKRPRTAFNAQKSERYSNLFEQDESPVVSKLTELKGHLEQGRYSTTEAVEALSKCLSGVLEKAFGQSRP
AHLRETETPWWNEECAVARAALVQAKVALGKPVVKEGERWEAMRAARSVYCRAKRRARAAHDAQVMRDRVARCRADAKAL
WKMIEERCTSKSPITADGFRDHFARLLNDGAGTVDDSAAKRLLAYCCDEDGWRDSMYDDEEWAELDSILNSDISIDEVTH
ALERLPNGKAPGTEAAPSECYKYAKTQGDPRADPPIPPVNRVAPVLEVLFNRIWRAQDGDESFPEQFTTTVLTPIYKRKG
DVKTPGNYRGIAVGGALAKCYASILLNRLARAGELFKWRHPAQAGFRRKYGTAHHLFVLRHLVTKHTRAGAPPMIVVQID
FEKAFDKVPRPLLWLRLREKGVSGRLLEAIQAAYEKVMMTVKADGKLSAAFEATQGVKQGCPLSTELFGLFIETLAEYID
AHEDWLDTASTAGTPELNGKKLSLLMYADDVSLLATTPERMRHLLSLVDTFCEAFGMKANVAKCERLVFTSDDQERRRLN
DECSGLRLAGQPIPAVDKARYLGLVYGPGRAFAACRETLCEAARRAMYALTNRLNRLRIFSPDIRMRCFEVQVRSILAYG
CEVWGPDVLAEMLDGGPPPRRRDSNNLAHGPFEACLKDEAVKLQVQYMRMTVGTKRPSHRLLFAELAQLPLHFFFAKLCI
GFYNRIAVQKDSLAHDALIDEVQDALVHPEGDGWCARLFRFISAHGVDVWQGRMHMIRPEREESRAGSPLPEGQIVSAFR
ESLMKAWKHERLQSEPSTFPSDNKQPGVQMSKYKHWMGLCAEGAAPLTMQGHSRAFIPVAHHKALMRFRLCCWPLTANRA
YGRPREERICPLCVANEVEDENHVLMRCTAYDQLRLGSEIDFTGGMQAVMQNADPARLAALLDSIWEHRSISTPIRGPN
>RTEX-12_BF_pol#LINE/RTE-X 251-3532  [Branchiostoma floridae]
MPIQKVALKFGSWNIQGGLKRKSQDEDFISYFDDFDFLAMQETWLKPGDHLRLESFSYCSSIRNVKKSSRCRRSSGGVLL
MFRNKFSKGVTKLPTRHPDFLWCKLDKIFFGLEQDLFVGCIYLSPENSTSVDTRNNTLFDILQEDICKFSIQGSILVLGD
LNARTSSLQETFIDDDCLNQEFLDIKDIRHRSNCDKGTNRYGTQLVETCSASNLVILNGRTPGDFNGKLTCHKYNGSSLV
DYCIVNYDFMPKVQYLKISDISVFSDHCLLTCSISTNYSPYVQQMKPSTHPLPTKYIWDDDSKDKFTEALQAPLVLNDLQ
NFLDKSFDNVDNAANEFAAIITRVADKSLKKIVHNNRKKKKKKKASKPWFTSSCASLRRKVNQLATLLSKYPWKLDIRHS
YFSNLKLYKKKIKTEKRHFKEKQWQNLSKLSKVDPKKFWREMKLQRQECSNREEVDNAISPKDWRNHFENLNNLAGSSQS
DIKFHQYIAQERPDICQTTNNQMTTEEHTDSIISSLEKLTPNPLDLEITDGEILESLRNLKGNKACGSDSIINEMLKYGD
TKLILPLKKLFNTVLHSGNFPHQWSRSILVPIHKGGTSSNPSNYRGIAISSCVGKLFTFILSRRFQHFLENDNLLSPFQS
GFRKNFRTSDNIFVLKTLIDKQTSEPGGKLYACFVDFKKAFDSVWRNGLFYKILSSGIGGNFFKIIQSMYSNVEYCVKTP
NGLSDFFQSTCGVRQGCNLSPLLFNLYINDLPATLMSPLCDPVVLKDTPISSLLWADDLVLLSKSETGLKECLKRLDDFC
SLWKLSINRDKTKIMIFSKHGRTSKQQQSTFRTQGHTIDITKFYTYLGIDITPSGSFSRATKQLRLKALRASFKLKSLLA
SNHNPSISLALDLFHSLVKPILLYCAEVLGTNIQCRDLIFNGVQEYPAENIREGIYNILSPILGSNIQLLKVTRLGKKND
VTSPRPVLVRFKRYSDKLNILYQSELLSNQNILLTHPKFSYEVSDLEHVLLNYCKILLQVPRSSVNAAVRGELGTFPLYI
EAQSQLIKYWLRLQNLPNDRIVKKAYDFAVEQNRTGPYMYKTYCADTVSKMFG
>Tad1-1_PPl_pol#LINE/Tad1 2012-5971 [Postia placenta]
MLGNRFALPDVPSADGRLRIWQQNLNTSLISQLDLLNNLHPSSIDVLALQEPYFDHLRNTRSGRHWTVVYPPGHKDGDKP
ARSVLLVNNQTMSSNTWEPIPVSSTDLTAIRVTXDTDTLYVYNIYNDQKHSDTLRLLATETKKHMRSNRNRRRTHIIWLG
DFNRHSPVWDEPRNSHLFTASNLSSAELLINTVSNLDLLMILPRYLPTLCASRTKNETRPDNVFGSSTLVENIIHCSSHP
ALRPACTXHYPIITVMDFAMTPPAPEVRYNFRKVDWTALRNDLAGRLLDIEPPQALRDIDHMTSKLQAITDLITSLVEKH
VPKVRPSPHARRWWTDDLASKRKEVNRVGRLTGQHRGDLTHPSHTHLRSLRNQYKEDIEKQKRHHWLQFVEEIDPDSIWI
ANRYLGHEGSDSSRARVPTLQADIGHGIDDLSENSQKGKAFFAGFFIPPPPAHVLNIDPNTDYPEPTFRWQAITDSQIAR
NIGRLAPFKAPGPNGVVNAFFKETCDLLTPHLGPIFRGTFTLKHYPEEWKISKTIVIRKPGRPDYRVTKAYRPIALLDTL
SKILSACVAESLVHGAELRDLLPTTQFGGRPGRTTTDALHLLVDRVKTAWRRGNVMSIMFLDVKSAFPSVVPDRLIHDMR
KKGVPKELTDWTYRKLKGRTTTIAFDDYTTDPYAIASGLDQGCPLSVIFHHFYNARMTELARPDNGEGTSGFVDDSTFLA
EAKTFEDTHHKLDQMMTRPDGALHYAREHNVQFELTKTALLDLTRKRERPTGHPTRTRPTTRPTSVIAGQPITPSASHKY
IGVILDQELRFKEHAAYALGKGQFWAAQLRRLSKPTQGMPLRFSRQLYLSVAVPRMLYAADVWCAPTLTSTKNGRRPSQH
VRKLIGVQRLVTMQSLGALRSTATDLLDAHADLLPIDLLVDRIVTHSALRLATLHPSNPMCAVAKKTARRLVKRHRTALH
HTFRIFSVDPDRTETINPTRLSPNWEPRFRVHIAPSAEKAVEEAESCRDGHKIWTDGSLIDGGVGAAAVLEKNDEHKAVL
RKYLGSGTEHIVFDGENVGLALGLELVRKERNVRRVSAFVDNKAALLATGNTHARPGHHLTDIVHKQIDHLFRCHPRARL
TLRWIPSHVGVPGNEAVDHQAKMAARQRPDPPNMTALPRVLRKSLPMSVAALKQHRTADLKREALTRWETSPRCDRLRRI
DPTLPSNKFLKLAGTLPKQQTSLLIQLRSGHAPLNKHLFRLGKADSARCSCGTDDETVIHFLLRCPNWNRARAPLRRAFP
PSNLQLRTLLNDPDALTHLFDYIKATGRFAAGRNDRPNPH
>I-1_AF_pol#LINE/Tad1 1661-5479 gi|70999918|ref|XP_754676.1| reverse transcriptase, RNaseH [Aspergillus fumigatus]
MKYQNHPRKESIAILQLNVGRIPEAHEIALSQAYSNHIDIILIQEPYIYRDLTRKITKRHPSYECFSPTDSWEISGIPRV
LTYIRRKNGIRASQLRPDSISQETLSDLLLLQISSCSGQSALIFNIYNAPAGAKRAGEAARTLTSLLESYFSLPTLLAGD
FNLHHHRWQPSLQHAPTTFAESFTEWLDRLGLLLTSEIDIPTHDKGNVLDLAFVSSSPTLIGASTRVAHHLDATSDHRPL
LTNLPWEQGPVETPQRLRFDTLDHTRFLTLLASNIANVRSSAENEDELDYLANGITAAIHSSYTASANKSIPQGGGQRWW
NTTCKEALQDYRAGLCTQKDFRRVTRRAREQYWRDKISAVTESKEVFDISRWHKSTGSYRSPPLKDPLRPDSPPAVALQE
KRDIISRNLLQNTAEAGDIPLDTPAVPSSSLPFPDVTMAQVEKSVLQAGNTTPGADELPTGIIKVAWPLIKDRVLALYQG
CLRTGYHPKCFRHAVLAIIQKPNKSNWSSPRSYRPIALLSVLGKGLERLIARNMAWIAIQYRVLASQQFGALPLRSATDL
TTSLLHDAEQALNQRLTASLLTFDVKGAFDGVLPGRLIHRLRSQGWPDNLARWVASFVTGRVVQIRIDGEIGPATEILCG
LPQGSPVSPILFMLYLAPLFWLGVPKSRFGYADDGAILAISPSIEANCQSLSNSLQEALDWAATEGITFAPDKYELIHFS
RRKADQDPSHTPSIVAGPVTVSENTTRPYLRWLGVLFDKKLSFKYHVRETTSKALTVANALRGLGNTVRGIKPYLMRQAV
IACVLRKAYFGAETWWPGRSRPCPRAGSISNQVQGQLDKIAKVIQTGARAILPIYRTTPLPALYRESGLLPAEIELDHIA
TSAAIRVRRLDPYHPLRRRAAKIAQTGWATSRFARRVLALPESEQINPLQYPPWLPREARADAQLRIKAPNGLSKEQAAT
NFQDFYSSLPNTDMKVFTDGSKLPNGMAGAGFALYQTGRLCLQSSFSLGLNKELFDAEAEAALAGIKAAMQYHTARFATN
LWVCLDNLEVATRLLSPFAGSSQEIFETVRTLASTWLERERFPYTDGGSVRICWVPGHAKVPGNEAADQAAKEGAALEPP
ISQKHSFASLKRQTKAAMISGLQKHWQAVAPQPYQDLCITSSPRCPDELRLPRHLLGRILAARTGHGDFADYHERFNHED
AHLHCRCGARKSPVHFFFCRIVKRRLPQPLGPPSEMIPFLLGTAKGAAKLAAWLSQTRFFDDICPRRPLPEHA
>NAVIRTE1_pol#LINE/RTE-X 959-4166 via tfasty with Expander_pol, 3 frameshifts and 2 stopcodons.  [Nasonia vitripennis]
NRNFFGERKGQERKKRGEQRNLRIINWNVAGIKxVDERTWGYLKGFDVICLQETWLEDKEGNFWEKKLGGYEVRIRNAKK
GGERGRVKGGIVMAVRQGTKTERIEWIEEKTNEFIGARILGRRDIWWIGTAYMREEKQENFKEIEGMTENARGEKLIWCG
DMNARTGxEGGGVDEEENEENRESKDEKINREGEELLEKTREMGHSILNGNTEGDKTGEYTYIGGAGCSVIDYVITNEQG
KREVQRNRVELGKTLGKTDEEKDKITERAIWTEKAIGQFREELNKGEEETEWTELKRKLEKAIRRKKGSGRKRKKNTWWD
EKCRLRKQRYRKLGKAIKKGAGRKEYVKAKRDWGILVERKKQEEMEKRIKEAGDSKTGRKFWEVVKSRRRKKRTRCSSKI
KKEEWLTHFKGQLGEETEEDLGTSTQGEDEEGEREDKEERITENEVRKAIRKMKKGKAPGADGLQNEVWIHGEEQVIGEI
TKILNNIWKGGKVPEEWKTGLITPLFKKGKKEEAKNYRGITLMDTGYKLYAEIIREKMERELEGREMLDDTQMGFRKGRG
TADAIYILSKAIETELDKKGGKVYAFFADMRAAFDKVNRREMWEMMEKLGLGVRIRNRVKELYRGTRSEIRIGEDKIGGF
ELHKGVRQGCPLSPTLFNVAMADTEKELSKVQEGGIVLGKKKFWSISYADDVVMVANNATGLKQMLKKFKKIIERKGLEL
NTEKSKIMVFKNGGRRKKEDSFFWEKKEIEVVKNFEYLGYMLKENGKEEAQIKKLKEKASTVMSSMWGLGEELFRDNWEL
RMRLFDTMVKSVMEYGAEVWGWKGKEELEKIQRKYMKWVMKLDRTTPEHVLHLETKRYKLETRTRRRAIKYEVKLSKAKE
GTLWRECWRTLEKEEEKERRRGKRRSNREEELNKRGWALSEYHRRLRAGEQVWSELERIEKDIQWQKWESEMRDSRQARD
VKELIKPQGETPEYLRRTGNTGKKGLAMTARFRMGNEARGYKYWMKEEERICRLCREEEETFEYIFSRCNRTGSRENNWK
NILNGERKNLAKLYRVIWVRKEKEKEEE
>RTE-5_NV_pol#LINE/RTE-BovB 400-3537 [Nematostella vectensis]
MVRSELPNAGSNVARTNKVRADHLPLRMTVKSKLGRRKRLVLAEWNVRTLMDRSRSERPERQTALIARELSRYEVDIAAL
SETRLANYDSMVDCGYTFFWSGKTEEERRESGVGFAIRNQITRIMEEDPTPVSDRIITMRLPLEKKVYATVISVYAPTLT
NPDENKEQFYSQMREVLSKVPKKDKLIVTGDFNARVGCEHEKWEGVLGHHGIGKCNSNGELLLTLCAEHSLVITNTIFRH
KEHHKVTWMHPRSKHWHLLDYMITRKKDLNDILDTRVMRGADCATDHQMVRSKVAFSLRRPHARTKAKPPTKLDVRKIRS
GDMKAKLQHEMNEALKNLEEMDGSEIEAQWNTLKTVVYETAEKVCEKPKRKHQDWFDENDKHLECLLEKRNAARANMLQT
NTRSNKNKYTAARRVLQQYTRKLKTDWWERKAESLQQASDVNDMKGFYNGLREVYGPAKRGSTQLTATDGCTILQEKSEI
LNRFADHFDQLLNVSGLVDEGALNSLQTRPEVVCLSEPPDIKEVVDAIDATQEGKSPGKCGIPAEIWKHGGTEIVSKLHK
LVLKVWSAENTPHDWRDASIIPIFKKGSRRDCGNYRGISLLSIAGKILSRVLLNRINRHIAPVILPESQCGFRSGRGTMD
MIFCLRQTQEKCIEQNMPLYAVFIDFSKAFDTVSREALWQVLVKFGCPPKFVNVIRSLHSGMKASVSQGGNDSKQFDVSN
GVKQGCVLAPTLFSLYLSAMLEIAFKDCVDGVSIQTRHNADLFNVAHFKAKRKTCQVIVREMLYADDSALVAHDVESMQR
LVDRFSSAAEQFSLKINIKKTECLFQPVKRQTLTQFPGEIHVRNETLVQTKDFVYLGSTISDNARIDNEITFRKGKASAA
YAKLRERLWDNHHVSLKVKGKVYRAVVLSALVYGAETWTVYRSQVKNLHAYMMRHLREIMKITWMDKVTNKEIYKRTGLR
SMADTLIEKNLRWTGHVHRMDTDRLPRQLLYSQLTTGTRNQGRPRLRFKDVVKRNLKWRDISSNSWQTTARDRPAWRVKI
KGPTQ
>RTE-4_Crp_pol#LINE/RTE-BovB 654-3881 via tfasty with RTE-1_AC_1, 4 stopcodons. [Crocodylidae]
MSSGITSMGHKETKMIFGTWNVRTLMDYANSDCPKRRTAIVSRELRKFNIDIAALSETRRAGEGHLKEEGGGYTFFWRGR
AEEDPRTHGVGFAIKNKLVNRLSELPTGVNERLMTLHLKLAKNQQVTIVSAYAPTLDADEIMKENFYSQLDTILSNIPRE
DKIILLGDFNARVGRDSKLWNGTIGKEGIGNSNANRVLLLMKCAEHGLVITNTLFHQRNKFKMSWKHPRSKHWHLIDYVI
VWTRDHQDVLITRAMTSTDDCWTDHRLIRSCMSIRIAPKxRMQRKQIRRKLNIECLKDPLKQREFQQLLNETLPTEHPEG
VEEHWTGLKTAVLSSCENTIGYKTRKHQDWFDENDTEIQGLIDRKQKAFCAWQNDINSAIKKNAHQQAKSEVQRRTxELK
NEWWIQKSKEIQHFADIRDTHGFFSATKAVYGPSTQGLNPLRSKDGTTLLKDSESINARWKEHFQDLLNHDSTVDEDKIN
NFPQKAIREDLGLLPTLAEVGSAIRKMKNNKAAGVDGIPAEIFKGGGEQLTCQLHVLILKIWNKEEIPANLRDALIVTIF
KKGDRADCRNYxGISLLATAGKVIAHILANRLLPLAEEILPESQSGFRPSQGTADMIFTARQIQEKCREQNRPLYLAFID
LSKAFNSVNRKALWKILSKIGCPNKFISVLRLLHDNMSARVLSNGNQTEPFEVKTGVKQGCVIAPTLFSIFISTIMHLID
RKLPPGIEIVYRMDGRLFNLNRLKSKTKTTTTSIMELQYADDNAVIAQSETDLQTILNVFSEVYESIGLTLNIRKMQVLY
QPAPNGETNPPSIQINGELLENVDHFAYLGSHLSSKADIDTEIQHRLKCVSAAFGRLSKRVFLNHDILAETKLLVYRAIV
IPTLLYGSETWTTYRRHLKSLEKYHQWCLRKILRISWEDRRTNISVLAEANSNSIEAMIIQNQLCWTGHVVRMPDSRLPK
RIFFSQLKEGQQSSGGQRKRFKDTLKANMKRCNIDINTWETLAQDRPKWRKALWEGPQHFETARRQAEEEKRNRxKEHQN
IQRSNTVPIPPGNTCPHCDKTCGSRIGLWSHLQTHY
>RTE-11_SP_pol#LINE/RTE-BovB 2-1769 Fragment, via tfasty with RTE1_LA, 2 frameshifts. 80% similar to 72094933_Spu  [Strongylocentrotus purpuratus]
QMDTRCKKVETSRQATKSKAVYTTIKQITKKSNIRMQAVKSKDGEILTEMKDVKERWKESFEELYNHQNQTNGEAPTQMA
SLDPVPDILRDEVEFAVRKLAEEKGFDSITGEELKAAGSTGITILHKIWREETFPADWGKAIITPIYKKKQINCGNYRGI
SLLSHAGKVFVSSSSKWIMKKTEEVLSEAQAGFRPGRSTMDQLFTLRQIMEKRLERNQSLLCCFIDYEKAFDSVWQEGLW
KAMNFFGYSSKYIHLLQALYQQSNSAVRVNGELTDWFKTTVGVRQGCALSPQLFNILLEAVMLYAIHDTKIGVRVQGQLI
NNLRFADDIVLIADNDRDLQTIVDLVHQSSSNFGLKINITKTEVQAISKQPQLLNINIGGEQLKQVDKFTYLGGTISQTG
SCSEEVKHRIGKAIGAFQALKKIWASKDIRCSTKVELYKVLVLSILLYGAETWTLKKVDENRLHTFEMACLRRIMGVTRF
DRLRNTHIRTQLNMEETIIDRVATKRLRYFGHINRMNSKRYPHILLNGNVHGKRPRGRPAKRWTDCIKADCNNRQVDSLT
KATRLTEDRKVWQAIVKQKPSYIPVMVWTA
>RTE_Ele5_pol#LINE/RTE-BovB 188-3241  [Aedes aegypti]
HDVGSATLVRWPIEDSSPTKKGKSRANGLILRQQTRQRIKDNDWKVGSWNVRTLNEPARVGLLARELRNVGVNVAAIQEI
RWPRTGEREFRAVDPIANTSFKYHIYYSGGDRAERGVGFIVIGKQMKRIIRWKPVSDRICVLRMRGKFFNYSLISIYAPT
NDKPDDMKDEFYESLDKAYGECPKQDVKIVIGDANAQIGKEDFFRPVIGTESLHSVTNDNGLRLVTFAAARGMAISSTYF
ARKNIRKHTWRHPSGDACSQIDHVLVDGRHFSDVIDVRTFRGPNIDSDHYLVVAKIRARLSSVTSSATHRTLRFNIQRLS
TDGVAAQYRQQLDEKLGRVNVAGDVDSLWDPIHEAVTTTAREVIGTGQRRRRNDWFDEECQRVTDMKNVARSRMLVAGTR
QNRERYRAARAEEKRIHRRKKRQHEESVVADAQESMNRNDMRRFYATVNGARHNTVPVPAMCNDREGNLLTDKTAVAARW
KEHFQQLLNGENGNVARNRMNIDDDDQAVDPPTIGEVKKAISELKNCKAAGKDEIPVELLKHGSEQLYQSIHRVLLKVWE
DEELPTGWLDGLIRPIYKKGHRLECANYRGITLLNSAYKILSRILFNRLRPLEESFVGEYQAGFREGRSTTDQMFSLRMI
LDKFREYNLQTHHLFIDFKAAYDSVKRNELWQIMSENGFPAKLIRLIRATLDGSKSSVRIADEVSTSFVTLDGLKQGDAL
SNLLFNIALEGAIRRSGVQRNGTIITRSHMLLGFADDIDLIGIDRRSVEEAFVPLKRETARIGLTINSTKTKYMVAGRDR
VRHGGVSAEVVFDGDVFEVVEEFVYLGTLVTCDNDVSREVKRRVAAANRAFYGLRNQLRSRSLQTETKFALYKTLILPVA
LYGHEAWTLKESDRKALGVFERKVLRTILGGKLENGVWRRRMNHELYQVYKDANIINRVKYGRLQWAGHLVRMSEERIAK
IIFSREPGRGRRLRGRPRIRWLYAVEEDLATLNVRGNWRSFAQDRRRWSSTIRPAMA
>RTE-12_Crp_pol#LINE/RTE-BovB 186-3236 (RTE-10_Crp_pol near-identical, with frameshifts)[Crocodylidae]
MSFASWNVRTLLDDPNSDGPERRTAIVTRELSRYNIDIAALSETRRADEGHLREEGGGYTFFWKGKPANDRRIHGVGFAI
KNQIVSRMTEFPVGINERLMTLRLQLTNNSFATIISAYAPTLDAEEEQKEQFYADLDEILTIIPKEDKIILLGDFNARVG
RDFNMWRGTIGKEGVGKANSNGILLLSKCAEHDLVITNTIFRQRDRYKTTWQHPRSKQWHLLDYVIVRARDLKDVHITRV
MRGADDCWTDHRLVRSIMSIRVALKHRKQPKSVRRQYNIKCLQTPRHREALQTHLSKKLANLRIENDNTCVEEDWQALKE
TIHEACTESIGFITRRHQDWFDENNAEIKALLDRKRKAFCDWQNHPTSSQKQGTFRRLKAEAQRKIREIKNKWWEEKAKE
IQQFVDNHDMRSFFSAIKAVYGPSSCGLTPLRSEDGSTLLKDNESIKNRWKEHYQKLLNRESTVTDETIESIPQHPVREA
LASPPTSEEVHQAIRQMKNNKASGPDGIPAEVFKVGGETMTNKLHTLFLKIWNTEEIPADLRNANIVTIFKKGDKSDCGN
YRGIALLSIAGKILARILLNRLLPLAEEILPESQCGFRPSRGTMDMIFAARQIQEKCREQHQELYMAFIDLTKAFDSVNR
EALWKILSKFGCPGKFITILRLLHDQMTASILCSGSATEPFAIRTGVKQGCVIAPILFSIFLAVIKMLIRDRLPHGIGIE
YRMDGNLFNLSRLRAKTKVTSASIVELQYADDCAVVAHTEEDLQTALNCFSQAYQCLGLTLNIGKTKVLHQPAPGQSTPP
AKILIDGQELENVEHFAYLGSHLSKKANIDEEIQYRIRCASSAFGRLXHRVFNDHDIRTRTKLLLYKAVVIPTLLYGCEA
WVTYRDHLKSLERHHQRYLRKILGIKWEDRRTNASVLTDANTSMEALIIQHQLRWTGHCVRMPDVRLPKQLLYSQLSQGQ
RTRGGQRKRFKDTLKANIKKCGIDTTNWEKLARERQKNDRNGRKGNKTEKSVVRPSL
>Polinton-6_NVi_polb#DNA/Maverick 3-1900 via tfasty with Polinton-1_NVi_polb, 1 frameshift and x for surmised intron. [Nasonia vitripennis]
ENFRSNCLHAYGLDPAHYYTTPGLSWDAMLKYTQVxRLDLLTDIDMLMFVERGIRGGISQCCNRYAKANNPYMKEGYDAN
ADEKYLMYYDANNLYGWAMTEALPYGKFKWVTNLETPNFFNVPDDGPKGYILEVDLEYPITLHGAHRDMPFCAEHMCPPG
LKQKKLMTTLHDKKNYVIHYRALKQALAHGLRLKKIHRALEFEQSKWLKPYIDLNSAKRTAAKNEFEKMLFKLFNNAVYG
KTMENERKHVEIKLVTKWEGRYGAEALIAKPTFHNCTIFDENLVAVQMFRAEVCIKKPIYIGLSVLDLSKTLIYRFHYDY
MLERAGDKCKLLYTDTDSLVYEVSNLNMYEIMRTDIHEFDTSDYAENNQFDMPRVNKKIVGLMKDECNGDILLEFVGLRS
KMYAMLVQNQKPIKKAKGVKSSVVKATIEFDDYITCLQENTILTREQRNIRTRQHKLFTEKEVKIALSARDDKRFLQKGK
TDTLPWGHYSIIVDEQPTAAVLSSREEEEAIAVAGPSREGEKQQLSWLESQSLSPPQSSRRYSKREKQSWWGSAYMSGIP
GARSSYCLLKSQRKDLFINHRRRRKERATTIPRRKNNSAKVSSIKRAHIHL
>Polinton-6_NVi_p1#DNA/Maverick 5767-6561 [Nasonia vitripennis]
MIVHRRQRRGRGFVNKIINKLPVELHLPGYQYCGPGTKLAKRLARGDPGINQLDVACKEHDIAYSQNRDNDEARTIADKI
LADKASKRASSKDASIGEKIAAFAVSKTMKLKTKLGMGAKRKRRTKKSLRLNKIVKAAAKSMIPTNNARKAILSALKGAR
DAVKKAGGKHKVLVPRVLPVPSKVGGFLPLLIPIFAGLSAAGALAGGAAGIAKAVNDSKAAKLQLEETSRHNRKMEELSI
GQGLYLKPHKTGMGLRIAHGKTLI
>7226209_Nme#DNA/Merlin gi|7226209|gb|AAF41374.1| hypothetical protein [Neisseria meningitidis MC58]
MLPIIRKKVKPDGIVYTDTFRSYDVLDISEFSHLRKFNGIPKEHLGLHLKKCQWHFK
>30248752_Neu#DNA/Merlin gi|30248752|ref|NP_840822.1| hypothetical protein NE0744 [Nitrosomonas europaea ATCC 19718]
MKASDFREWVGKITQLSRGQKEQTKHKLGGMVPRIEVAKWLESSFEPICPVCQSNHFYRWGYQAGLQRFYCRMCKHTFTA
ISGTPLARLRHKDQWLNYSAALIEGLTVRASARQCRIDKNTSFRWRHRFLTLPAAAKANHLEGIVEADETFFPVSCKGQR
QLDRPPRKRGKQIHMRGTGKDQVPVLIVRDRSGATADFMLDAIDRKAIEPPLRTVLEKDVIFCSDGAAVYRSVARSLGIT
HRPVNLAAGVRVIAGVYHIQNVNAYHSRLKQWMKRFHGVATRYLENYLGWFRWLDQQENLSSPIVPLQAALGRENQFQLL
TNT
>13592884_Tmu#DNA/Merlin gi|13592884|gb|BG577820.1|BG577820 Tm_ad_12A09_SKPL Trichuris muris (parasitic nematode) mixed adult cDNA clone Tm_ad_12A09 5' similar to gb|AAD01406.1| (AF007429) putative transposase - Haemophilus paragallinarum, mRNA sequence (frameshift, stopcodon) [Trichuris muris]
DQLDMCKKSAEHWNESMRGVAAEVLMRQPLVIWGPGLTVEVDETVYSKRKYQRGRLYPQQXVFGGICRETKECFLVRVPD
RSSRTLIPLIQQYVRPGTMVITDCWRGYDSLSQVGYTHQRVNHCQNFVNPAAGAHTQTIESLW
>Polinton-5_NVi_py#DNA/Maverick 13465-14823 [Nasonia vitripennis]
MAFLHSHSTECMSSELDLFTLPATQTSIESSSFLHYKPVSSLSDDVDAPLEFVVPAGSEHYFDLAHTMLHVQAKIVPADE
ATATTEDLKVGPINNFMHSMFNQIDVFFNQKIVSPPNNAYPYRAYIETLLNYAPAAKESHLTASLWYDDTSGGFDSPANA
VSTATAPMIVNKGLENRKYFTQNRRYFDMIGHLHHDLFNQDKMLINGVEMRVRLVRSKDAFCLMDATADGKFKLSIKEAT
LIVRRVKISPGVLLAHAQALSKTTAKYPITRVEVKSFTLHSGILGDSIDNVIHGQLPKRIILGFVENKAFNGNRALNPFN
FQHFSINYISLYVDGVQIPSKPLQPRFTGLDKLYIDAFQTLYTGTGVHFLNEGFGINRYNYYKGNFLTAFDLTPDLSAHC
ATHWNLVRSGSIRIEVRFETALLTAINCIVYAEYDNVLEIDSSRQIVTDFSA
>Polinton-5_NV_atp#DNA/Maverick 12780-13424 [Nematostella vectensis]
MDDRRFRCPCAVMVVGPSQSGKTTWVHALLQQAPRAFDKQFRKIVYCYGEWQPLFDSMQRQLGVEFHHGLPDSITDLFGK
HDTPGLLIMDDLMDQIDRVVKVFTQESHHHDITTLFLSQNLFPGGKSRTASINGHYFVLFKDPRNQLGVRMLAQQAFPGQ
LDYVMDAYRQATQEPHGYLLMDFHQKNPDAYRLRSHILPNQCPMYVYXPAPPKV
>Polinton-4_NVi_p1#DNA/Maverick 5449-6324 Matches Polinton-3_NVi_p1 [Nasonia vitripennis]
MYWDQLRAVLSCIMIIHKQQRRKGRGLVNSLINKLPVELHLPGYQYCGPGTKLAKRLARGDPGINTLDRACKEHDIAYSQ
NRENVEARNAADKVLAAKAWERVRAADAGVGEKVAALAIAGTMKAKSKFGMGLKRIKKKKPSISLAKVIKAASTSAVPSN
NSHAVIRSALKAARQAVNKAGGKKNIRIPRMLSVPSKIGGFLPFLIPIFAGLSATGALAGGAAGIAKAVNDASAAKRQLD
ESQRHNKTMEAIALGGRGLYLKPYKEGYGMYLKRGQGLRKKKKTSNCRNAH
>Polinton-5_NVi_p1#DNA/Maverick 1836-1273 R [Nasonia vitripennis]
MAELKKLAAQRDALLASIEAKKRAMEKLNGQLERYQQRMLDMSALLQQKQQEAERKASLAVQFVPINVRCRVCITNSSEH
DVWQQCWRCLLFRCWKCNGQPCPCILDMDSPRSPSPPPSSAGDDNDGDDNNVQGTPPTARRNRSVPYNFHRMPTPPKELV
PGLLRGGPTRQLRQQRATRKCRCIACL
>Polinton-5_NVi_pro#DNA/Maverick 15671-16252 via tfasty with Polinton-2_NVi_pro, 1 frameshift. [Nasonia vitripennis]
MNTRQIITAIRGLKADSIGVYAANHVPKLLSTPTAIVTNLDTSDQPGSHWVAIFIDKNGYGIYFDSYGVAPVSKHHLDRL
GKNCTRFDWNKKQVQSVDSKVCGEHCIMFLYHMCSGISLRKYLRFFSSDFVKNDALAVKFYRRLMRRMQNKTMRHRHHRV
NAFPRTSSTGRGYCNQICTAKTGCLLSEQFIQTY
>Polinton-5_NVi_p2#DNA/Maverick 14973-15674 [Nasonia vitripennis]
MTDYVIDIQGFRDINKKFIPKEVGVLSLQSRIVGHWIIRAPCSFTELPADMQQTNNYCTLDVHGLEWHDGDISFKNLRRN
LCNLVKDARRIYVRGQAKAKFLEKVVARRIINLEDFSAPSFDELSMQFPNVLLCTSHGIKKFENKKNFCALRRAYQIRRW
IHSIVASPHRSDPYDINSQVMYQAILDYDRLQMERYHYPERFRASDVVDGIKKEADEKKDGAVEEEYVDAPST
>46143253_Apl#DNA/Merlin gi|46143253|ref|ZP_00204423.1| COG3677: Transposase and inactivated derivatives [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
MAQSFLLSSSARKLSPLKIARLSDADAFSLLHELRWRSKNEQVCPKCGVQHQAYFISTRKQWRCKHCRHTFSITSGTIFA
NHKLPIQTYLFAIALFVNAVKGISACQLSRDLNVQYKTAFTLSHKIRESLIVQRELFPLSGEIHIDGTYVHSAPRPKNKK
AERVDRRLKQNANPNKRGVLVMRERYTEQDALFNPQLVGAKRTITFPILSENSESVKKLATAYIEPNSRIHADENSAYDE
LMVNYDLQRVNHQREYRSDDGITNNLAESYFARFKRMYYGQVHKMSNIYLDNYANEVAYREDTRKLDNLTIFNDITSKCL
STPSENAWKGYWQGHHRQVERLVM
>MuDRF-1B_PSt#DNA/MuLE-F 282-4051 via genewise with MuDRF-2_PGr, 6 introns (923:1006, 1242:1318, 1399:1456, 1565:1644, 2156:2241, 2502:2574) MuDRF-1_PST product very similar, but suffers from a very poor consensus. [Puccinia striiformis]
MKPSTNHPKNGQDESDSNYYDEEESEDDSSSSDEGPDPPSPRRKPGRLQKAGLLPLHKKKSKNPKIKVPSPILTKESTKA
TEETPQSKRDTRNKSQKKTKKKNAEEKHPKRWXIPDMNDXYETFIDHGTTVDXQGYPLHPNGDTIFVQRPGICEAXNFGX
TAFTKRXQVRXRSKGRWKVITHKCLGVLVCDXXDCQWAGSPPTDPDVLKELFETPVQCQGMAGKCXGEVHHIKCENTALR
IDXHXATEWGLLRHRGVHXHVWPECKKPDXLAXERFGEVVENNPKXGAFKLKIGKPSQDxGTTFETVTDIHPxFQNSDRL
AYYRKRKLIGLDLVPGKNGSGVGDKFINDMFSWAARGLQVISASFMPGVEHFTFQTKWMRERLLARDGNREHYQGGLLSD
VTYRYFENGYLLSTSMFCEQLQRWIPVQLTWIRGLSEEYYQVHFTVLLKQFFAPGITVAEREGLCRQVVDFSKAQANGFK
AAYKDVFRDPSDVNASAMLKGCHQHYITQVARIKGNRGLIMADEEPEFFERCMELLKLPAAGEPNHEERVDHIRRRYPKI
RKWLDWWTMADVEAMLFPSRRPMLEDHPDGNDGLPDTTNAQESLHRLYYMFSDGKASLLVGMVDMFAFVTMLAEDWHAVM
RGVSINYGAQKVKDIGLTLGMSQKRKRYANDGRPPDTTDALVEIGAQKPKHAKLGRPRNSPNINKTPGSAFASYRAAPSD
SDRANRCWMAAALEGLYALYTPLWIRGINGKGNDLFTYLTKHFSSRKTHEMTMAGSLGSILSKAQGKFFDMARQAYPGRF
NPGVFASCDYFIKILLDPKQHPKNNHLHNLFGFAIRREFSCEAHPDIKQAPLAMERPHHVLTISSDMFGEARLSYGDVGK
LLTLWETDGLPLHSGRVCKSCLESKPLFKPPTPTKKKKQAKKPKITRVASEVEVLTDYINISGDNQHYLLEHSHLHFPDN
LPPLHLNIHLDVTSIQDETRKRDFMDGTDWPFKLTLGGYVYTLVACGFWNTYHYWGKVLQTSAGMTGVWLHNDADNHGYA
QLINRVPGSIAGKAPHTSWLLYSRTWTPSETQFMEESIEKIQRDNPKPVGELPFLQAKALLHLS
>Merlin-1_XT#DNA/Merlin 1-849 Replacing BQ737326_Xla, gi|21876223|gb|BQ737326.1|BQ737326 [Xenopus (Silurana) tropicalis] 
MDLSDLPGTEKEAVLFLQQRGILPNQRECASGHPMKLYFGEEIFFKCLECKIKKMLRVGNWLENSRLPFVQVIRFLHGWA
HELTSIEWCQRELNISKSTAVDWNSYCRNVCLADLEHQPKNKIGGKGRVVEIDEALFVKRTNNTGQAQPPQWVIGGLCKE
TNNVFLEIVTDRKATTLMKALADNVEEGSAIQTDSWRHYNAKDVEEAEFKQFALDHRFSFLDSSKDAQAKMWGGTKWCKK
YRGTTRQHLNLYLVEFLWRKKYVDEDPFDALLDSIAQFWPPEE
>15384307_Ehi#DNA/MuLE-MuDR gi|15384307|gb|AAK96240.1|AF406971_5 transposase [Enterococcus hirae]
MNELTTEIIAALAQKQDLDEVFRHHLEIAINQLLQTELAEFLGYERYSYAGINTGNNRNGSYERSFDTKYGQLNLTIPRD
RNGRFENHTLPAYGRHSDNLETTVIQLYTKGITTAEIAELIENMYGAHYSKATVSNMTKAVNEQVQAFQQRRLASQYAAI
FLDATYLPLKRDTVQKEAVHIAIGIRPDGTKEVLNYQVAPTESTGIWTELLGTLIKQGVKDVLLFVADGLVGLDEGLNRH
FPKAKRQRCLVHVGRNLINKVRVKDRKAVINDFKQVHWAANREAAELKLNEFANNWHRTYPKLIKDLLKMPNLLTFMDFP
PAIRQSLYSTNLIENFNKHLKRTTHRKEQFPTEDSLDRFLVSQFNAYNEKSLKRIHRGFKGLQDTLEASFI
>30349493_Cje#DNA/MuLE-MuDR gi|30349493|gb|AAP22019.1| transposase [Corynebacterium jeikeium]
MTAAPYSIDPTTYLDDLLAQASPDLMRQMLQGFINQILSAQADTVCGAEYGVVSTERVNHRNGYRHRDLDTRVGTIDVAV
PKLRHGAFFPDWLLERRSRAERALSTVIATCYLKGVSTRRMNDLVATLGISSMSKSQVSRMSEELDDMVADFKNRPLDPG
GYAFLSCDALTIKVREGGRVVKCSVLLATGVNADGYREMLGMHVATAESNASWKGFFQDLKARGLTGVFLITSDAHEGIQ
HAISEVLPNASWQRCRTHFAKNLYEKVPKTQWPMVSAMFQTIFQQPDATSTWAQAREVVDLLEPKFPHVAAYLEESLDEV
LAFTAVPKPVWTKVWSNNPTERLNREIRRRTDVVGIFPNRESIIRLVGAVLAEQHDDWIQQKRYMSLTALEHTKHLMHHP
GEHRDDHHQLTA
>29349845_Bth#DNA/MuLE-MuDR gi|29349845|ref|NP_813348.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
MKEEFDFESIKNKAIEQLKAGKPLLGKDGAFAPLLESILNAALEGEMDAHLTEEERQMGNRRNGKMQKQVQTPLGEVTVS
TPRDRNSSFDPQFIKKRETILAEGVADRIIGLYAMGNSTREISDWMEENLGNRVSADTISSITDRVLPEIKAWKSRMLDS
VYPIVWMDAIHYKVTDERGCAVTRAIYNVLSIDREGHKELLGMYISRNEGANFWLSVLTDLQNRGVEDILIACIDGLKGF
PEAIQSVYPNTAVQLCVVHQIRNSIKYVGSKNQKEFLRDLKCVYQAVNKESAENELLKLDEKWGEQYPVVIRSWQDNWDK
LSEYFQYTPVIRKLIYTTNTVEGYHRQIRKVTKNKGVFPSDTALEKLVYLAYRNIRKKWTMPLANWATISQQLAIKFGNR
FKLL
>Merlin-1_DF#DNA/Merlin 354-1216 via tfasty with Merlin1_CI, 1 frameshift. [Drosophila ficusphila]
FDGQNGIPLSKICDKNKKKVKCNFKESVNKNTFFSGSHLTHKQISRFVAYFVMTPPPHTELLMDEIGIAEHAVVDWSNFL
REVFFDLALNSHEGKLGGEGKVVEIDEAKFGKRKYNRGRIIEGQWIFGGFERGSKNIFLIPVPDRKAETLINIIKEKIAP
KTHIVSDCWAAYNALSACENFEYTHSTVNHSKNFVDPNTGQSTQNIERTWRDVRSAVPKYGRVEKHFEGYLAEYIFKRAY
HPRKTRIHGIFCAIADLYNPYNPRINTPNSEQLAEFELLDLEENADED
>AV383621_Hro#DNA/Merlin gi|6128678|gb|AV383621.1|AV383621 AV383621 Fertilized egg Halocynthia roretzi (tunicate) cDNA clone 006I18_5 5', mRNA sequence [Halocynthia roretzi]
IWKSRRFSLVDHVLSKAEIDEETYQLKRLHVLQSHGNALDVIEFLAKLGLLVNSVACDCGKQMSLVKYSSCRDGFRWSCC
RSCSKTKSIRAGSFFGESKLPLMTVVIMLSTWASEAPMAETEWQEEVSQSTIIDWHNFIREVCKEWLLANPQKIGGLSND
LEAIDVEIGRIRWR
>56475703_Azoarcus#DNA/Merlin gi|56475703|ref|YP_157292.1| putative transposase [Azoarcus sp. EbN1]
MCRSCRHQTSVTTGTIFEKTRTPLRVWLAGAWYATNQKLGVSALGLQRVLGRGSYQTAWTMLRRFRRAMVRPEREKLHGL
VEVDETYLALTDRQLPLTAAGRKSKTTKVLVVMAVEIHQPKGFGRIRLRRVSDDSAASVIPFVQEAGDAAAVVRTDGSAA
YLGLKSLGYGHERKVMLGAEDAAHVAMPGVHRVASLVKRWILGTHQGSVQPDQLDFYLDEFVFRFNRRASRSRGMLFYRL
MEQAVRTPPVTYADVARKRRPPQA
>ISAzvi1_Avi#DNA/Merlin gi|53611338|ref|ZP_00090182.2| COG3676: Transposase and inactivated derivatives [Azotobacter vinelandii]
MARLRKRHLWQGYAEALTQSLTVRRAAKHCGVSKNTAFLWRHRFLTQIADHQAQHESGIVEADETFFLESFKGQRDLPRP
PRRRGGSAKQRGLSAEQIPVLVVRDRSGQHADFQLKKLDAVHVRERLRPLIDADAILCSDSAAVYAHFAKAEGITHQPVN
PSQKRRVDGPFHIQNVNAYDSRLKSWMIPFHGVATKYLTHYLGWRRLLERYKTQLNPLICLREALGRVAMQQLTQT
>ISSpo3_Spo#DNA/Merlin gi|56677272|gb|AAV93938.1| ISSpo3, transposase [Silicibacter pomeroyi DSS-3]
MEKNKSSSPDFSVRDFFKRFPDDEACLEHIFNVRFGARHVCRACGVESTFHRMSDRRAFACAACGDHVYPTAGTIFQDTR
TPLQVWFYAIYLFVTTRHGVSGKELQRQLGVTYKTAWRIGHKIREQMDKHDLKAMLQGHVEIDEAYIGGKRPGKRGRGAA
GKTIVMGFKQRGGRLVTEIVPDVKLKTLRAETLKTVDAGATVSTDELYSYSLLKGEGYTHVAVKHGAKQWTIYDAETDTM
HHTNHVESFWRHFKHSIRGTHVSISQRHMRKYLDEFTFRANHRGEVNLMFDRLVAAF
>ISSod11_Son#DNA/Merlin gi|24375914|ref|NP_719957.1| ISSod11, transposase [Shewanella oneidensis MR-1]
MKTSSYLLKAGVDYPTNWDEFVDWFHDEQSCTSYLYALRWPNGFICPSCSSHQSPYQLSNGKLKCHACRFQCSVTSSTLF
DKTRTPMKSWFAAVWFITNQKNGVSALGVQRLLGLGSYQTAWSLMHKLRYAMVDPERDKLSGIVEVDETLIGGVIPKSSI
KNQQGKRKAIVLVAVELLSPSGFGRIRLRQVESATKEHIHQFIQDVIEPGSTICSDGSQAYKQIDKKGYKHNRMVHLGSS
VPAHETMAGVHRVSSLCKRWLLGTYQGAVKAKQLDYYLDEFTFRFNRRKSDSRGLLFYRLLEQAVR
>Polinton-1_SP_px#DNA/Maverick 3385-4140 (Polinton-2_PX_atp > 94% identical) [Strongylocentrotus purpuratus]
MESEDQVYLTLPSNSSFDYFPNNTLTSFTTKLATPLVLRGEYEVALVDIIYPHSWTNVNFTNNKYSFSIGDQVITVGRVP
VGHYRDAQSVCTAFNESLPANLRNKASFNINPSTLKVRAEIQPDSGVYLSEGLGQLFGFPEGTLCTNQEGKFLPDLNGGL
FAMYVYTDIIENQRVGDISAPLLRIVAVDHKRAGEVVDRSYQTPHYLPVKSKYIDTIHIDIRSDFGDKVPFQNGKVVLKL
HFRSVRRRSFHL
>Polinton-1_PI_int#DNA/Maverick 6673-7599 [Phytophthora infestans]
PKNGFIGAQALYQKAKELNPKITFKIVKDWYGSQPDIHRFQEQKKRFNGFKIASHNPNSWQIDLAFWKKRPILTAININS
RLGYAKLLRKKTAAIVLEALKAFVRLHKVDILTSDNGSEFMNFQAQELFKSKTIEHYNNEPGDHGTMGKIERFNRTLKQR
LTKMSPKRITQKLITDVIENYNTTFHRSIGMTPNEAKGKVMNADLSHNQVEADRIEKEFDVGSSVLYRLKKQTFDKEAAR
WSKAVYKIAGIDGYRVQIRSKMVIPSTRRQTILKYSTQRLQMLLLIVAIFLKLRRSWIIRRHGLGSTNI
>Polinton-1_SP_py#DNA/Maverick 4550-5875 (Polinton-2_PY_atp > 96% identical) [Strongylocentrotus purpuratus]
MERIHHMSCECSKSETDLFSIPPTQTTVEKGKWVEFFPLTNISDTTPIQFHLQGSTEEYTDLSQTLIHLQVKVVNGDGTP
LAEDAQVGPTNMFLHSLFSDVDLMLNDRLITPSTNTYAYRAALETLLTYGPEAKESQLTSALFYKDTPGHMDDGNPLRED
AGNMGLKERHRFIKGSKTVDMVGLLHLDMVFQDKLLLGGVDIKLKLNRSKNSFSLMSSVQNAEYKVIITSASLHVRRVKL
SPETSLLHAKTLETQTAKYPIRRSEVKTFSIPRGNLSFTRESLILGQMPKRLVIGCVSNTAFNGNYAKNPFNFHHYDLNF
LALYADSEQIPWKPIRPNFSAPDPNYILAYQTLFSGINSMFHDKGNQITRTDYDKGYTLYAFDMTPDLSTGDCFNLRKHG
NVRLEMQFARELPETVNVMVYAEYESVIEIDRNRNVIIDFGG
>Polinton-2_AMi_7p#DNA/Maverick 8644..8961[Crocodylidae]
MSNCVKRNLAVLKLLVQSSPQQRKAILCSASEDLVAAISEIALNTLKGNIPLTPHQIHVLKKRRRIIKNLSNKRLSQKKE
TAGETVWGIYWPPVKFCHPSDHGTFD
>Polinton-1_XT_pw#DNA/Maverick 2263-2700 [Xenopus (silurana) tropicalis]
MLSKRTYGDPAVYTHYYITQSGHGLDGFRGSEYMYGAGIGGLFRGFFRTISPIFRRGLEIIKPHVKNAAKNIVKDAVANV
STAVMDRINRPAQEQEGSGIAYISKKPRKYKRRYNSAFLTMATNKSTQRKRRRVQKTARRSPGDIF
>Polinton-1_NVi_atp#DNA/Maverick 10159-9458 R [Nasonia vitripennis]
MFKKQSVKLPVVNFDTIAEPEKKNKRHGDLLPDSIRAVFCGPSNCGKTNSLLALITHPNGVRFENVYVYSKSLNQSKYKF
LKDLLEPLNGIQYFAFSENDDVIAPDNALPNSIMIFDDIACEKQNNVRAYYCMGRHKKVDCFYLCQSYAQVPKHLVRDNV
NLLVVFRQDEMNLKHLYNDHVNSDMSYSQFRELCSKCWMDDKHGFLLIDKDSAINNGRYRKGFDTFAINIRHT
>Polinton-1_DR_polb#DNA/Maverick 13216-9068 [Danio rerio]
MDDENRTDDTYNIQPDQTLSVRLQRGVEMDADRDEDIFASLQHMIDMYPNSRDITFNNIPISQITNLDDLEMYIEQELNL
NLPEDVESFLNSEQSGGAVTQETSASATVNSQLTDDGFDDDDDDDDDSHSTSHATHGRTDIESTHQSNVDDEQPSTSNVA
EPLRHRPTRQIDIETLLRDGGNVNEYHVLPRPRFNSVSLRRTLNMSEIRSQDLASYHIRLHDTMDDIVSFARQIGGDGSV
INLCLRTPTLKSDVNAVLTPGNNYDVNLFTDQIAKILQSDDKLSANETVEIEAEVVMNRLGGGGVRRKLTDLAFDQVIKR
KKTSLFIPTNISNKLCFSICIAHFLDPQLPECELENRASIIHNKVGLAIQDKVGFHDIAKFENMLDIKIVVFYRTNTGVL
QTYVNNNEPHDKTVYLYLQDEHYYMILNLKSFIGASYVCEFCYKGYTSVRNHQCKHVCNVCFDGECYKHPKKIIHCTDCL
RYCKSSYCYDAHKKPVLEGEKVPCDVIKYCKKCNRRYDKKKSKHICAPNRCDACREELVPDGEHECFIKTVPLKDPQNKY
IFYDFETRYENARHVANFVCAITFCGERFVAGGSDCVKKMIEHFRKPKYEGYCFIAHNASGFDSFLILEYFCKAGLQMDI
IMKGCKLIFMFDVSFKQRYIDSISFIPMALSKMPAALNLTTTEKGYFPHHFNRLENENYVGPYPDKKYYGYENLSEKDQA
KFDAWYATTSGEVFDFKEQLCQYGVNDVVLLREACMTYRESFIECTQIDPFSYTTLPSCCMGIFKTHYLKDHTIALTHDN
AYIRQNKTFSSVSIEWLEYLKKTRNVDIHHALNHGEMQIGKYFLDGYYEQGDSRYGLDFLGCLFHAHQCRYEPHKLHPMS
GVPFGVLRRQVDEKIEILQNAYGLKVEIIWECEWSKMKQTDPSVIEFMSTYSAPERLKPRDALFGGRTNAYKLYHKVGEG
ETISYLDFTSLYPFIMSTKTYPIGHPEIIFNDFQPIENYYGLIKATVYPPRKLLHPVLPYRCGGKLMFPLCRTCAHAENQ
TSRCNHTDDERALSGCWVSVELLKAIEKGYVVVKVDEVWHFPERSDKLFSEYVKTFLRLKQQASGYPSNVTTDSEKETYI
RKYYEREGIQLDPSQITHNPAQRAINKLILNAVWGRFAMQSQHSVTQLVRDPEEFTTIVFGKTDALKYFTFISDDVALVQ
FHPTEDSHRIIRDINVFIGAYTTSWARLELYKLMDKLGDRLLYSDTDSVIFVSKAGDWMPPLGDYLGDLTDEIGDGDYIT
EFCSSGPKSYGYRTASGKVCMKAKGITLNAKNSQTIRLDTLIGLVDGYVTSGDDSRYILAQADNIVRNKKHLTLHNKSVV
KKFKVVYNKRRLLPDYTTLPYGF
>Polinton-1_DEu_px#DNA/Maverick 3531-4604 (reverse) [Drosophila eugracilis]
MQVSIMNVLAQLTKARSALKRKFDDLKHVKNQSVIELEETFKPITEPLHELVNENKKQTFLKTNVGAKVKRELYENEKYE
NDMTDDDDLYYTTNGRQHQTKRNLSQYRSMNDSDSYNDFFSQTNVFEKGKKGETYNDDVDKGSEPEAISMPTKENEMRED
INIEDEIDNKNYDFNISHLSRENILDKAYGPKKSLDNVLTLGNSELKINDNKIHLSSGMSCELTPGLYSLIFHKHPQNYN
DHDLKTYKNIILETNVHRLGYNVNNRIKGSRAFKYTKIIKKIINDNENPTTSTPLRTKTGFGYMTLEESKPNYIYWNDVN
ELVERLQILVASKTAGNNNHNNEIFSIVEELREEGIIV
>Polinton-1_DY_py#DNA/Maverick 10358-11647 [Drosophila yakuba] py proteins of Polinton-1_DAn, Polinton-1_DBi and Polinton-1_DEl very similar.
MSNHIECMKGELDLFAPHPTQSSILRTEEVSYNPIASLDGASSIEFVCLGNGETYRDLSSVYLRLVVQLKKNDNSVIEGN
AVGVVNNILHSIFRSSSVYLNNILVSQSDNNYHYRAYLQTVLNYGSDASESHLASQGYFPNFGRLTSGKYVYPSSNETLK
NIFQNSNKVELFGKIHGDIFNQTKLLVNNVDLRINFNIEKTAFYLMEKDSESNLKILEAQLFMNHVTVNPSILLAHHHVL
QTKNALYPFSKVEVKSFTIYPGNNTLSIDNAVIGQLPNFLAFCMIKNRSYSGNRGLDPFNFEHFKMQRFNLMVNGVQVPS
QALEFDYSNSENVQSSRGYNMLFRSSGIKHYDRGLQITKEMFDTNSFILAFDLTADQSNTTICSNLMSQGTIRIEGRFSE
PLSEAVTCLVYCEYDSMIDIDKHRNIRTLF
>Polinton-1_EI_atp1#DNA/Maverick 6407-7672 [Entamoeba invadens]
MLQTWGTYNTNFIFPKRDKIEIANKRLEDELKYCRNQYKIEKDENCIDQYYVKYSITYKNIDEKGYKLSSKEEFDKDIEE
VNRIYKYRPDIVAYSTYDYKKFTSERKDDDGEYVDNDEDYGDERLNMQMSSARKPTGASMDINKSDVAIVDFDIHTSLFD
EKYNIALRDYIIKKYHLKNGLVKTTSGGLHYYCYPDMIPHELKNKNKVVKIISNPLYEVDIFIPRPEIDDGPKVMKYGSQ
AYNHSGEIGIYQPINRRQKNITVRDFEINDLANLGNLYDVYNILKLGESLTIPNINAELCNKTKTRIYDDEGNEILQDIE
YGTDKLEDKDILTHIKSEIHAHTNKGITLFKLFTIFNRFVKEDREYCYKYCYEHMNLTSKATEQFNSAKESSANIKLYKN
LNPNNMLKKYVTNSVKPDVKKE
>Polinton-1_EI_atp#DNA/Maverick 9284-8442 [Entamoeba invadens]
MNKFIYRSEKSSDFDKSHTSERSKENEDNIDSNIDTYVDNIVETKLNNSKKKFISKISNDVNFRYNSFNLCIGPQGSSKS
TSVMKELMKLSLIPNDYHLIIYVNNNSSDDTFTSLVNYINIPVVKTDYEHVEKQCEQLFKLKDDYNKMVDEEIHKDSSIL
QYLYVDNFDKQRLHTFILFDDASFIFEKNSKSKFKNWFCQCRHLNITVFACIQIFNSIDPKLKSQLSTVFLFKGFSRERL
QLIYRQCCIDMSFSDFFNFYMRLQKYQKIIIDNIDCSLVIK
>Polinton-2_HM_pro#DNA/Maverick 9607-10764 (reverse strand) [Hydra magnipapillata]
MCTNESLSSYFNNEPFLKDYFIGVYAFDELSQTQTHVNIIKRMVKNGSFFIYNNETSKENGEHWRLLLKLDANHFFCFDS
LGTESCLKQIPPFLRSNRHLFEAVEEIQTNIQINTLNINYNEIEISSYXRQTNHFPYEWTSDNHEFYWFTKFILKYSSMT
GQQTILFSYNKTCFQWENSSLCGAFAAYFISLLPNYLINGQIYLPLLCRLLNYHFYEVSSLHASELAQINLLPFFHFVRT
KLFKHLDVTAKQLFEKDMKLHLYLRKTESLVRNNVTMKTMKIPIENDIFKNEVMTNNKIRSFLNDARLLRTNNECQWDKI
SIQDINAIRDVMNEENLALKHYENMNDMYFFDYRRLKDINNFIDVPQDDVMTKKEIKTRFVQNLI
>Polinton-3_SP_pz#DNA/Maverick 8662-7925 [Strongylocentrotus purpuratus]
MENTRKMVLVPQETLRNLQTTQPTVKEKQINTLDEQIRTVLERDDLDLHGKAQLYSQYLRQYLHATDSLKQPLSIELKNA
PYSPSTPTSDTPPMLKEENTVERDILQHVPKLYVKRATQLLEKMKQHGDIGWTGSGELLLRGQRMMGTNMCDLVYDLFRE
RRGYTPSGSEHFIRGLANINLPETIVSNPQRRSELQRLKRMRIESTSSTASPGVSLTPQSKPLSSKSKRKKKGRETSPRS
PEWFPF
>Polinton-3_SP_polb#DNA/Maverick 14889-10345 [Strongylocentrotus purpuratus]
MSSHESNSQRSLNFKEKLRKLVVSFFPLSSSQLQSTVEKAAESVRDGVRRASSSTTSAHHGTTNGVSERDAFNDFLPRDG
GSSNNSDHALDTPANAGQSARGSGASEIATPPIAPREIPATSNHDGPGARYSSKNVPPPHVNFNFSSDEEDYPNPPPTNV
QKGLKKQIGGKRIHSDTSTGGKKKRKTKNTTDPSIVIYPEEGEKEEEEEEEEVFSDIPDLLPSSPKWVFVDQRMSKRFGV
REVWYDFKSDSKPFATIEDMLEYIRSSLEELRTLILANTSERDYVRLVLVSDQLNVPIAFPWATVRDFDIDAILDRIEEV
LNSNQDFFINPGFTIRFHHVVNPAGGRARKYDGISATLAALKKKSIVTVPAGDDGMCFAKAILIAKYQKLKHQKYRNWSR
NDRASPTAFLSEARALHRLAGVPEGEVDSSQYNAFQAVLSPAYRLMVYRGRRKEALIYAGPPTGEPLFLYLTGNHYDVIV
NHEAFLCARFVCTECHETYRDPRYHSCCRMCLDCQSTNCDRDTFRETVNTTLVCDKCNVTFLTEGCFKMHSVHIFDGKTA
CQRNFKCQSCEKIFDTDLIGIERSAHKCSNMKCNTCKMTVDGRYHKCYMKVPPQSPFFQQENAKPSTRRAKKRKTGKGKE
DFPTKYIFFDFECTQETGLHVPNYVHATWECVHCMDGKQDENQHCERCGPPEGRSVAFSGDSTLVDFSKWLFSVENHQSV
AIAHNAKAYDSYFLLNHLVEQGVQPHVILNGAKIISLQTKDPKIEVKDSLNFFQMALSKLPKTFGLDEMKKGHFPHLFNT
AANANYVGPLPDKKFYGVGSMGKSALMEFHAWYDALFKENYVFDFKKEMLDYCQSDVHILHQSCKVFRANFKYISMTETN
EGGIDPFLRCLTLPSACNLLFRTNNLKPKTIALIPQDGYAHAKNQSLIAGEWLHHEAMLSGIDIKHHFNGGERKVHGRYV
DGYGEGEDGKKYIWEFLGCFYHGCTTCFPKPGFKNKKLGKTAGQLYKETMHRIKLLRDAGYTVCYTWECEWKEIRKYPDV
NPHIAHLQDVFREPLNPRDSFYGGRTGGCSLFYQAKPGEKIKYYDFTSLYPFINKSAKYPVGHPTIMHSNFPPLESIFGL
VKCTILPPKKLFHPVLPFRSGGKLTFTLCRTCTTTLNQGPCTHTDSERALKGTWVSEELKKAMEMGYSNLQLEEVWHFPA
SAQYNRQEREGGLFAAYIDKFMQIKQESSGYPAHVVTAEDKERYIADYLEHEGIALDPAKIEKNPGLRAIAKSIINVLWG
KFAERSNLRKTVFVRTSAALLDMLNDKSIVVQDIIVLNEHLIEVHHTMAKGFVDHNVNTNIILASFTTALARLKLYTVLE
QLDDRVLYYDTDSVVFKTDPLVQHLDPTTGDYVGDLTDEIDETGEEFIETWLCAGPKNYSYCTNKGNTVCKVRGFTLNAA
NSMVINHDTMKELIQGVPGTTKTIHESRILRDSKNKTIYTKQTKKDYRVVFTKRVCLDGGRTLPYGHADIPRTCI
>Polinton-3_TC_polb#DNA/Maverick 13367-16549 [Tribolium castaneum]
MEILFLELNINKFNPLRASTYIPLPKDIAKRRAVINIHNDDNECFKWSVLAHLHSTEVNVNRHRVDAYREFEEELDFTDI
SFPVKLTDIFKFEALNNISVNVYGTEQRFDHEKGKWVSDIIGPFYLTSKKRDIHVNLLLIVDDERMIKHYCLISNISRLI
SSQLSKHNHAKFICNGCLLFFSSEQKLVKHRKYACNEVVTTLPTSDLIINKFGKEVPGNELTFQNFDKSLKVPFVFYFDF
ESILKPLRNDNSADNIRTIVTHLHEPYSFGYYIKCAYNDNLSIYRTYRGKDAPKIFVKWLQDDVNRLYHDHLKHIVPLEM
TPLDELVFQISTHCHLCKEPFKTDYGSLNCDRVRNHCHLTGEFLGPAHSICNLNYKIPKYIPVFCHNLTNYDSHLFIKAL
ATEKTIINCIAQTKEKYITFSKKILVDKVMNTTTNTVDNIFITLRFVDSFRFLSFSLDKLSQTLTSNECLTIRKHFPDDN
QFNLIRQKGVFPYSYLDCFNKLDDTSLPLIQQFYDNLNKTDISEHDYERAQEVWNLFDCKTLGDYSDIYLKSDVLLLTDI
FENFRKVCLKIYELDPAHYLTAPSLGWDAMLKMTGIKFELLTDIDMVHFFRKSIRGGLCQCSKRKAVANNKFLSNHDPSK
PTSFIMYLDATNLYGAAMSEYLPYSGFRWEDPNEFNDNLILNLTDNADVGYIFEVDLEYPSELHNLHNDLPFCPEKFIPP
SSKTEKLCATLNNKVHYVLHYRNLRQAIQGGLKLINIHRVLSFNQSPWLKTYIDLNTEMRNKSKNALEKDVFKLMNNSVF
GKTMESIDKRVNVKLVTSWNNIGRKPGAESLIARPNFKNSSIFTPNFVAIQLENEKVFYNKPLYVGFTILDISKTIMYDF
YYNFIKLKYGNNATLLYTDTDSLVIEIFCENIYDDIKSNIERFDTSNYKAENIHGIPVSSSVIGKMKDEYKGRVISEFLG
TGAKAYCVDVEGELSKKAKGIKHNVITSELHKIDYQNAVTVPNTEIIKEMNIFRSKLHNIYTELKKKIALSFKDDKRYIL
NNSEGRTLSWGHKNILPQTQE
>Polinton-4_NV_py#DNA/Maverick 6601-7890 [Nematostella vectensis]
MATSEVLNFTESPIVDEGIERYEFHEYEPVARTNLNSAGEIRINVEQQDLFTLPSEAYLLFEGRLTKADGTAYANADAVA
LTNNGLMHLFSQISYQLSNQDVETVFHPGQATTMLGMLKYPNDFQLAQGLNQLWYKDSAATAVIADNTGFAVRQAFLIQK
PTAKGTFSFIVPLKHIFGFCDDYNKIVYGFKHTLTLVRKADDDAIFRATAAGAGKVNVDKISLFMPHVIPSDMERMQIYK
TIESKVTLPVAYRARQCDTITVPQSTTFSWRLSVKTSPEKPRYIIVGFQTDKDGSQEANPAIFDHCDLKNMYIMLNQERY
PAVDYNLSFPNQQFSRAYRDAATFSEKFYGMNDLITQSNITPSDYKDLFPLMVFDVSKQSERLKSSVVDVQIKATFNAAV
PAETEAFAVVVSDRMLQFQSDGQKMSVVY
>Polinton-4_NV_atp#DNA/Maverick 1518-2345 [Nematostella vectensis]
MEVKDLSWNDSTNKRFNNPLLPRSIRGLIVGKSGCGKTTLLLNLLLRPGWLDFNNLQMFGKSLFQPEYKILKKAFEEKLP
KEAIIRLFDIQDEVMRLNVSPACVVEEMSKNLAEKADMECKFFETAEDVPDPRDLNPQKKNLMIFDDLQLEKQNKCEAYY
IRGRHSNVDCFYLAQNYFKLPRQTIRENANFICLFPQDLKNINHIYNDHVSTDMPKEEFKKLCKTVWEQPHGFVVIDLTS
KKYNGKYRCGFDNFYIPQDQQSLQGTFSEMLPRSI
>Polinton-3_NVi_polb#DNA/Maverick 1465-4671 Fragment (probable an N-terminal bit missing), via tfasty with Polinton-1_NVi_polb, 4 frameshifts. [Nasonia vitripennis]
KINSVLSCKFKKIVKNVDGDEEGECIETKHFNTKNTEIFAASIVKQWFIDHIMEPLLTKIEEFEEQDSGWTLHSIVNIQI
NMNVFNPIRTGSSYIPLPEFLVKKEACINVKNSDNQCSIKKNPNRVTNYFPYEDELNMSGIEFPVSLKKIPKFEKQNNGI
SVNVFGLDEKSIVPLYLTSEKKENHVNLLLLTEVETDSLEENISHFVYIKNLSRLVSDNLARRKKKRFICDRCLNYFFSE
KNLAMHEEHCKLLNDCKVKLPTEGRDYVEFKNYGFKEKVPFTIYADCECLLKPLESKDGSESNTTPMQKHEIYSIGYYFK
CAYNDTLSVYRSYRGVEAARWFSEELRIIEMSVTDLYKNVIPMTPLTSDEIISYNTATVCHICEKPFLDGNVKVQDHCHL
SGKYRGAAHAGCNLNYQDSRIIPVIFHNLSGYDAHFIISDVSNHFPGQVYLLPITKEKYISFTKSVENSDIKFKFIDSFR
FMPSSLEKLSSYLEEYKIVDREFSSLEKEKINLLTRKGVLPYEYITSWDKLDETTLPDLDKFFSTLNDSGISMEDYEHAQ
NVWHSFNIQTLGEYSDLYMKTDILLLADVFENFREHSIKAYGLDPAHSTPGFSWDAMLKHSGIRLKLLTDIDMVLFIERG
IRGGLSQCSHRYATANNKYMLQDYKTEEETSFLIYLDANNLYGYGESQYLPYDDFEWITDCENFDFFSVADNAPNGYILE
VDLEYPYELHDEHNDLPFYPEHLTPPGSKQNKLLATLQHKKNYVIDYRALKQVIAHGLRLRKIHRVLKFKQSPWLKSYID
LNSSMRAQPKNEFEKYLFKLMKKRVNVKLLTKWDGRYGAQAYISYPNFHSSSIFNENLVAIQLRKTKVIINKPIYVGLVV
LDLSKRLMYDFHYNYMRKMYKDNCKLLYTDTDSFIYAIKCDDFYEDMKSNIHRFDTSDYPADNIFNMPRVNKKIVGLMKD
ECNGKILTEFVGLRSKMYATRINGQDCVKKIKGIKGSVVKKSIKFDDYVDCLRNTCIKHRKQHVIRSRLHNVETIRQNKI
ALSPYDDKRRIQDDNIQTLAWGHYTMKGT
>Polinton-2_XT_polb#DNA/Maverick 7413-12092 [Xenopus (silurana) tropicalis]
MQQKSDNLYVCRTPSVKRSVSHVSKPVEVTTKKTRLGHSIANTNMALLNKAAKKQSFNNHNWYTWYTHQTDFWHKLQGTI
QNIIIDVTALLGLPCKNELLSKVTELSEKLYNVNKTFRRGVELLPQTIVGDAHSLLSSFVPTPLPTNNANDTVTWLLAQC
SFCCGLRSVIDSVLNEFQCLVSMSDERMRSVMASKLKTRYTAVSNVFRCGLRDMIGKGLKTKSVRYLQHKKNVKYRSKAV
KKAINTLRSLRRTVPVKRRHCKPYCSVSGSRIASTVNHNVNPDTVMPGSSSTVPAEEIMQSHIQYSPVVHQNAISNTPNE
IPVQNEAHDQNNGLEASVYLEHINRFQKSRDKFNVLEYYEHFRFVNLEKMPSFKDAVHSVHGAIQGLLNGMMPDIGHHDL
IQLRLDGDGLSNPLYSIKRSKDSLNAESFLNDVSKLLQSNAELLGNGTLRLVVSIVKNRVGGVISRRRVRSTPYSRIIAK
KRRWLFDLNNENNNLCLAGSICAILAEKDTADSVLLERARAIHKALGIPDDQLVSFSDIPAFEKYLNVTIKVYYHSQGEW
RVFHTPGPCRDKVIFIYHEGKHYYGIKKMSAFLGYEHFCDYCHTPFHHKNEHSCHYFCKSCLRRDCTEVLSEIPRCPSCR
TFCRSKECLKQYKSLASAGKIKCRLKKFCDSCGNYVIREKHTKCPGLKCNVCYANIETYDGHVCYMRRIKPEAEAIEKYI
FYDFECMQETGVHIPNYIYALPLTGDEYWEFQGPTCLSDFVTTFIDKKFSGFTFTAHNAGRYDSYFVVQQLVKEHIKIDL
LAQGGKLLCVTVTDLGIRFIDSLNFLPMKLSKLPKALGFQDCKGFFPHFFNTAENQNYIGAMPSKEFYGYEYMMPDEQAD
FIAWYEANQNNVFDFQYELKKYCIQDVKILKQACACYRDSVIEMTTKTVTKYSSNENVEPTEITYEVDPFEYTTLASVCM
AMYRLKFLPKNTIAILPPDNYNKNQKRFSTPAIQWLMYTAHKEGISIQHALHGGEKAVGNYFLDGYAFINGKHVAFEFQG
CFYHGCDICYSGKDFNRVTGTTFGQLNHKTQIKIHHLKSAGFEVREMWEHDWNTQVESDNDLKTFLPQPLQPRDALYGGR
TNAIKMYHKTAPGEQIHYYDFTSLYPFVNKTKKYPKGHPKIICENFKSFDNYFGIAKVKVYPPKDLFFPVLPVKMNGKRM
FPLCRTCASICQTMPCSHNREDRSLTGTWCTIEIQKALDMGYRLGEIFEIWHFDNTTDKLFEKYIKVHLRDKQEASGYPS
WCTDAKKKQQYIDDYYEKEGVLLRKEHIEQNPAKRQIAKLFLNSLWGKFGQKSNLPSTCIVTDPDVLFKYAFLPQYEVSS
LDFLDDDTVMLNWKYAKECGTLSRNTNIFIACFTTAYARLELYDLLHKLNERCLYHDTDSVIFVSKPGDWNPPLGDYLGE
LTSELPPDTYITEFVSAGPKTYGYKLSTGKTTLKVKGITLNARNIQLMNFDSLKDLVLDYPQNSDYQKKIVIRQNGIVRN
KKLWQIETRPLQKTQKCVYDKRRLTGGYNSEAFGFTKHGH
>Polinton-2_TC_py#DNA/Maverick 3082-4287 [Tribolium castaneum]
MFDIEKGIEWDEGVVGYKFQSHEAYTARYENTDEIRIPLQEDLCTLPCDSLILIEGQLVKTDATTNKTVPATETKFVNNG
VAFLFSEIRYEVSGVTVDTNTKPGITTTMKNLASLNQSESLKLTMSGWDLNEEATKPIDGYFQACIPLNRLLGFAEDYKN
IMLNIPQELILIRSNSDVNALICATNEKARVVIDKIAWLVPHIVPGLKEEVKLTKTIEKDKEIAVPYRSWELHSLPLFPN
TTKCSWPVKISTKFETPRYIIFGLQSNREGQLDKNMSKFDRGDITNMRVFLNNERYPYENLNISYKKHHFGILYEMFTNF
RSRYYYTDKKETHITPTQFFDSYPLIIIDCSMQKTGLQTQSIALRIEFDTDTGISEGTTAYALVISDRAFTYTPLTKSVK
QV
>Polinton-2_XT_pro#DNA/Maverick 5114-5761 [Xenopus (silurana) tropicalis]
MNTLELTRILTADPCTRHIFAGVLPCDLLPIHKLKDLPAAFIINTHNSRLPGEHWLAVYIDHKRHVLFFDSFGISPLSGL
YPDEILCFIKKNADKIIFHNEQLQSSLSAVCGEFCIFFIHQICSGLSFKNVLSYFTNDLKQNDQLVSRFVWKHLRSLRIK
NVQCKSLQCCTTYCKANRGVTNNLMYVSCILKPFEVKTDLNSVNAHGCVSIKYQLL
>Polinton-3_HM_p4#DNA/Maverick 19677-22496 What is this? [Hydra magnipapillata]
MELPANIIVLTEDQYELRKLVNDYMRRMISTELVPVFEKGGMDSILNTEIKNGFYLRSIQYYMDFGNEAGAYTESLNLAT
DLVTQKLSGVSSTRTLLYALQKLQPGVDVFSKWFKVPLTHRKPNSTKQVVKRSDLYYDVNSFYVNNQFKNNALLLPLQLL
GTYQTALGNDLFGIEFVKDANGNATPELQYTWSKAAAPDFYLLYGRTKFSYEDTSGWDKTNPWFPMEISSKRQLALPDLM
IYSHSSDRDPDTPVAFDFGPWSNITRDTQGPTPYETLFNWARTFYQFFGPDPTDPSVHVWQNKSQAEIAALPFLVFVEHY
KNTTNVEVLNLIDPTRPYYNMTKTSNKRIVYRITPVRYNILDSFYYVSEVKMDLYLANMMKSTGPTPSTPELKELQAFYY
KQFLPWNVAQCIKHVVNDPLVKKTAIQYNDKTQSMSPWYDLDYVPLVDTIYRTCVDSIPIAFTSDKNSPDVLKFLLGNMV
GTYMRKNNVISNNLPVDKTGVPQFPPHHFMFLQQQLFFPVDFTKDHYVTYKFTLENVQFNDMPMPYLASNELVWKEFQWQ
TPQFFPNSLGGSEPLLCNKPYGLTELEVPYDYTNISVGTGNESFWILPSFTNIFNNDHSVRTARRFFVPPLTIKTKTPST
ISEDVFMLMKNVDILNIDPTADYGKYLEVLFYIDEADPIFSNSLKVSLNSTAFIERKIAPSDNKYFKFTNSSKSYLEQLS
LKQLTVRGVSNTGGIILQVADDGSIIEDWKTSLPIQCLKMSLYEPMYKIDKRITVLLERDRSLVGVEKNPYSFKMSAANV
RDLSTLLNGKRKFICTLANILNISNRVLNFKPTDKNVWITMDGVEQTPTFVNNTVLDNVIMSFDMAPYLAIQDSVVQISF
ENTIRPQFEGFYKTFVINDADDFKNLKITFVNSDLAPLQFDETXTFNNPNFTFYIQPFN
>Polinton-3_HM_int#DNA/Maverick 18224-19468 [Hydra magnipapillata]
MDQIDDLVSSALTTIQSSLFGLNTIAKIKKNLLALQNGSKSAQDQKLFDNIRKFREENEPYNKLIKRWSEMSLLFKVTNV
LSKLEEPRTPYSYRTHKKSYNLPGQYFHCDLADMSVFNTDKKVYRRNYCVVLVDGVSGFVRFKASIGKSAREILVALKSL
FEHMNRQEEVFLQTDRGGEFYNKQFEAWCNENKITHFSSKNLQKAYLAENAIRRLKDIYQKLRIAKKLTDKTDWTSFLPL
VEEKLNKSKRTVSGITPEQLNLDTKQGEALRMLDSFQDQKKARLTFKSQNLYRVENETLKKKLPILKPLLVGMKVYKRNF
NTDPRLKFAKASTNVVSKWDLKNIYNIVKVIRNNDVANNFYSPPDLYKVANALDEKEVYYLKRADITPYIRDRKKDYYSN
LNEYETEFFDKLNL
>Rehavkus-1_CS#DNA/MuLE-NOF 6388-7362 [Ciona savignyi]
SLGTNIALLHLNTHYVCDHIRKKRSRIFYCKGYCTFSNCPVTFEISIPDLSLQAEINMKGEVRHLQHEKRARYVQGNDRE
ALRKLLEFKNPRREFLDGIANLEEDTYQSGNRDGVHSMGVLKQVAHEGKKIERCDMNQWLALEKLKTRDGDKSLIRQIGL
DPPYIMLYSSEAMRIFYKKCNHDIVYIDATGSLMIGKEKKKFYIYELVVRNIVGKTPFAVASFITARHTIPSITNFLLTF
SNDVQRASKRKRFPKLVMCDGSVALMKSVCLGLFECSLNAYTDKCLDIAQGNHKEMFHQNGFSALLCKSPHVQCKEIVQE
NVRFY
>MuDR-1_DT#DNA/MuLE-NOF 2274-5446 via tfasty with MuDR-1_DF, 1 frameshift and 2 stopcodons. [Drosophila takahashii]
VDVTTIVNALCNVNIFTENGTLKPRSDDVWMEASNNLQGTISARALNLYARVNRYNILTTVKQRCGISEANNTANNSTLN
STAPEDDPEYEISEPSKNGPLPILYLNLQLDEEAWRSIAPKAQQKKDLRSRNYLQPNWTDIIAKCVYEKVPLPCAFNFKK
AKISDKVDNIWLKIEGYCSECSSILKGHCLVEPEEQCGISISVSVPDTRGIPHNKKRRCTGSRRIEIGEELILKKAALWR
KEATKDMKDDDPEPSYIPKLPTLRKLREEATNRHLGITKDRDPISSLYLKKYEGELAGCILDIGLDEFFCIYCTGAQIKT
YTSRIRSIKKISVDATGSVVLPIVKPNGESSYVFLYQIVMEGDDSIFPVFQMLSAKHDTASIQFWLSRFISKSGQFPLEV
VSDFSLALLNGISLSFNECRLKTYISKCFQNITSEDPTELPRCFIRLDIAHLIKMMCRKNVFKGKLPNVKDFFIRCIGVA
TTCETKETFAEIIKAVLIVALSESSGEDESGDYLSSHRNEKYLLTRIATFTALDHEENEDNVYLPEELEETDGDVSDFIS
SIKNKAEDEASKCNSAKCRPNPYYLPELMPPLLKLCQYFVLWTNVMKDKLSSKNNVGSSALVEAYFKDLKNTDMSIFHRP
VRADKFVVQHIRCIEAVCKLERAAMKRKTxKFLNSxRNNQLKKIRKEKGVLEDMSDESDVEYLLKEENWKVKNNTKNPSD
YNVKEDEENENIYQTMDLENEYEESKHRPRGKYLKKCPNVELIYNRPHRRQRDEILHNGGAMGPIWIGNKLIQFKNTCAM
DSLVEILSTAYMDNYYYKNKLDSNTDNLTVALIKKYAVEGISASLYCERGLILMSFFDGKNNTVLCQTNIGAFVDQALNG
IPSATSRRSHKEGAKNECESHTSTHQRLELMDSEKVKDLGVAKALLTFVGEYFEESEEICRRCYGEEILERDPGPHVIID
IEFATHSAFHQKTTAGSTGSATLLQIPQEIEIQNRKYILSGAIEYVPAQGSGIGHYISYCRRVTGSWEVHDDMCRRWRKF
TAYTTKMTFHIVIYTQAE
>Novosib-1_CR#DNA/Novosib [Chlamydomonas reinhardtii]
IVKEQTGADAATVRLHNKCEKELQVLLVELQSAKENARTRAQAVALAAVPDPRALAMPGAAEKAARLVLEAAAAPAASKR
PAPRAVLGDITNGPVAASTPPACLPLPLGAQHEEEQLDTSGADGTSPPPPTPAATTAPATMPTTVPVDVGAEVDVVAVAG
VAAAEPASPPVPPAAATVTAADTLSQPTSQGRRLYGVSLWRGRFKARVTLGRQEYNLLTTKDSGPDPSNRLQLLRQVETT
AAEERASRQVGTGGKAAALKALWGCYAAAFTPLPVDPFILQAAAPMMPLLRGVRLRTVRNSSKPLLCAAPLPGPGPQLGP
GKVQKKKRPASKRKPRNAKALEAAPAPALVVGATARPRRNVRQPEWLREAATAREDREEDESEPHSEQEDASEGEEVQGV
LPTVAAADVALDEGQRCQLCYSAASDDSQLHSTMLLCGDEQCTRGCNAGYHIGCLAACLPYDQRQGWHGRRTGAGAAPGG
GPAAAEAGGGAGTGAEPEPGAAPGGGPAAAEAGGGAAEGAGGGAGAGDAAAAVEAIAATARRKWFGRVLLCRDLRGGAAY
AASIQGIPHLEQQRQRFLKLAEAFPETRVVDPLEELIREVRADPAAAERPPSMTDPVLHERISCFMQKSGGGGGSDMDML
DAEAAALVAVVPVTEGQRVVGHLLQCMRGTSVPQLATAAQLERGYWAFRLTHGQWPSRLRPAQALATMNSAVAQEQHHAK
AAALKRTGVDFSLAHSHFRSGKAANLIDEPHKLKTAAKSQAQGSIFPPGASLEVMQDIAALRPCGFTGSARPGPMRGGNP
GPTEPPRTGELGMDSCVVQAVLQQLVQDWQETPVMQRRQKFMDEDPKVLLAIAQGRTDTQSVACAQALLGSRLLATALRD
RGFTREALWMETLIGAFRAWDEAQLDPLERAMRNELRYFLISRCLGNSWSVVGGSCSHVCGLSLANAASFLNNTDARLHV
LENMRPQDREHLNERAISTDANEGHFACITGPGGQKPSVMVLQGRERRIAHHVAMRQRPEQARGWSYRRARTRGGYAMRP
TDHLHSSGSGRRLGKWNNGAKLADPGLSAKREGAIAKRAAKKAKGRQCSIRAVQFNKAKMMA
>31194665_Aga#DNA/P gi|31194665|ref|XP_306280.1| ENSANGP00000015450  [Anopheles gambiae]
PLPFISTLQRYAQKLNLKQGILEDVLVFVGNLAESFNSCECECVLSFDEMKVCKILEYDPAADEIMGPHNYIQVVMARGL
FKNWKQTIFIGFDQQMTRDIILKIIERLHEKNINVVAIVSDNCQSNIGCWKDLGAHDYNRPYFHHPITKKNVYVFPDAPH
LLKLIRNWLLDCGFMYKSKSIKPDILRDLIDKRNEVEMTPVFKLTENHVSMSPQERQNVKKTAELLSRTTAKSLRWYYHN
NPEAEELASFIEAVDSWFSVSNSYSPIAKLDHKKSYIGSEEQKLALHTMFNYVENMRAIVKTNLQVFQKSILMHITSLML
LFDDMKIKHGVKFISTYK
>28630152_Dvu#DNA/P gi|28630152|gb|AAM94947.1| P repressor-like protein 1 [Drosophila vulcana]
MTYCQFCRKHVQGVKFIKAPKCFVRRSLWEKILGCSLGEYSKICETHFDASQWKPADRKGHAAKRRRLNNDAVPQKEPER
VLAGLGYANCSTQTEEKDINRTTHMGSVIMKNKILTMEKEIRSLRQQLEQYQNVDKSLSNIFTATQIKILKSGGKRSTFN
ATDMSAAICLHSVGPRTYKHLYEKGFPLPSRATIFRWLADVKINAGTLDVVLDLMENEEMCLADKLCVLSIDKMQLAAVS
DVNNSEDVLNEPSNYVQLATVRGLKKSWKQPVYFGFNTRMDVDALNSIIMKLHKINYPVVAVVSDLSPENQSLWSELGIS
ETNKSWFSHPADEDLKIFVFADPSHLMKLVHKHYIDVGLDINGHKLTKTTVKQTIRHCAMPDVSVKLRINENHLNVCSLT
KQNDNLATQLFSSTTASSIRGCSELGYNIENACETADFFELFNDWFNVFNSKVPRVNSTDLPQAYGRQIKIQQSTLAKMS
EIMRTEMTDSADKLTFQIGILVNNASLDGLYEYLAEEYEAINILTSRLNQENVENFFGSMRSIGHGGQYDHPTPQQFRDK
IRKYIEGLIKLNQ
>MuDR-1_CI_p2#DNA/MuLE-NOF 3464-4576 Fragment? [Ciona intestinalis]
MLRNVPSYLHNRPRNVMQHCMKRLYFATNISAGGITRVNTSSFTVRSSCGKLMYDVYLGNDSDFPKCTCPDFKYHILPCK
HMFAIFSKYNDVSWASLPTWYTDSVYITLDTEVITTLGVSGTNRNPTTETTTPEDPDCIELSLVDPVEVPEEKPSVISDK
PSKQTINQLVEMVNSIKDTFYDVTSQQALLQAKDALQSVQLNLNKFCKDEEGIRVVKPPLSLKLKKRKLPSSFVCDKLPR
KYPKPNKYQNRHGAVADRMVPLHSVTGLQPKQSKFPVSCNISIPKNANSQKVTNFKILSCHMTEKHFTYKALQCGPYSVT
YLQLLSLEINISSQQKQEIWECDRQFRVGWLYDQIIDSYLWCLCKANHVC
>MUMET2_p3#DNA/MuLE-MuDR 3735-4439 (perhaps part of tp)  [Medicago truncatula]
MAHVSASQPTVPHASDTHSTMPHAPSSQPLMHTEPVQRPPKLTSVQGPSRFTSVQGPPMEVAKLVHQNIHLERPFKIQKV
SSSNATNTVPEKIVTDFYNALPASQIESGLGPDVFDDPDDHVLAAITDQMFDAAENKFQILNNEKDVKNLNEQKLKTLGL
KKHVRPKNSRKSTRLMKLKTKAIKGAGSSIAEPMVIEESEEGTLTQENDGVIKSGTCMEVLRGLPKLVMRASKPN
>MuDRAVI2_p2#DNA/MuLE-MuDR 6799-8295 via genewise with MuDR-12_SBi_p2, 2 introns (7405:7493, 7764:7842) [Vitis vinifera]
MREWEMDPRLRPYIIRSGFYGVYRIGHITLDWGLITSLVERWRPETHTFHLPVGEMTITLQDVAVILGLRIHGLPITGTC
DIDWSLLCYELLGVTPPTSEIKGSAISTRWLCHQFSHPPVDLDDATLERYARAFILGLIGSTLFTDKKGTHIHMCYLPLL
RDLTQTSMYSWGSAVLAHLYRELCRASLDGATDIAGCVTLLQLWSWERLHVGRPDFGRPPAPPAAQHLEHDAADDLPAEQ
LDQGLQDEALLHEGLPADPLGCRWRVPLSWAQNPSRVLTFYRDQLDAQTHDQVLWEPYMGDLVAHLPAISLADQEIWRTM
SPLICFDIVEWHRPERVLRQFGLQQGIPPSCSIELDLHSVDRRGRHKYDWGAFHAQYITLWGSREERIATAPPMVGVMQF
HDPYMEWYRRITRRLITPPLHRDQMRYHSTAAATQLLVRFFNL
>MUMT_tp#DNA/MuLE-MuDR 499-2578 via tfasty with Jittery, 1 frameshift and 2 stopcodons.  [Medicago truncatula]
MSFGYEKEITEYYKNYAERVGFGVXXXXXXXGDEGKMYFTLACNRARKYVSRSKNLLKPNPVTQTQCKARLNACIYLDGT
TKIKSVXXXHNHDLSPGKARYFRSNKNMGAQMKRRLELNDEAGINVSRNFQSLVVEANGYKNLTFGEKDCRNYIDKVRRL
RLGTRDAEAIQKYFVRMQKQNSQFYYVMNVDDESRLRNVFWADARCRVAYEYFGEVITFDTTYLTNKYDMPFVPFVGVNH
HGQSMLLGCALLSNEDTETFTWLFKTWLECMHGRSPNAITTDQDRAMKNAIEIVFPKARHRWCLxHIMKKISEKFGSHSD
YESIKTLLHDIVYDSFSKSDFMTRWENMIEFYKLQDNEWLKGLFVERHRWVPAYVRDTFWAGMSTTQRSESMNSFFDGYV
SSKTTLKQSVEQYDNALKDKIEKENIADFRSFNTVISCISHFGFEFQFQKAFTNAKFQEFQLEIASMMYCHACFNRLEGL
DSIFFVTxSKKVYDQMKDIVFMVFFNEKDFMLKCTCCLFEFKGILCRHILRVLKLIGKTDFVSSNYILARWRKDIKWRYT
LIKCGFDNLVGKTELQRAGKACDAFYEFASTRINSEDDLVKVMNLIQNMKIELPCNETSPRIVEEDCSAQNQATILDPKL
ARSKGRPPSKRKTSIVDQIVKKKLAXXXXXXXXXXXXXIRVQEEVSMKFIAIY
>Vandal8_p3#DNA/MuLE-MuDR 7739-6300 #ReverseORF Via genewise with Vandal21_p3, 2 introns. Likely a fragment. [Arabidopsis]
DEEQPMQPERMFFSPSEYVKTCKIGTRCTVQQTVKYLEEFKEDLPWFKAHPQFRHVFHMPEEKNHMTQGLWMLLLRTAQT
EMDRECWFVVNGVPIRYSIKEHALLCGFDCHDYPEELQPSMKIVDADLKFAKKIFKKVSGIKIVDVEKKLDEMKKCGEKK
KTDRKKLAILLFLCKVIAAKSKADGNIDKFFLKIVDDVRACETFPWGRFTFDGCMEGIKSVMKSMKGKAKLQTCFSGFIL
PLEILPFEAIPHLGQKFRDPVRFENECPRMCKAKFSSSVMKGFSLEEINEELGSVKVISSVLEPDYEEKDLLRRIVDGDH
VDDGIGFVDPVVDSWRNRLIKERKRIFWKDMFEADVRARSGGEQMEEENVPRHVPDVPGSSSSCSLKEAIDEGFKRVMAM
LAEHNERLVTIE
>SHAMUDRAV_MT_p3#DNA/MuLE-MuDR 1353-472 (reverse) Probably the C-terminal half of SHAMUDRAV_MT_p2, but splice site is unclear.  [Medicago truncatula]
MTQYHVIDKRFKTWYKSNGFRFPQESEHWDNRRSHTLPRMRPRSLTHTHAYIEWLTTTCNPRLRISIETNPSNSDPDEAE
EEEPEHEPEIRNNQTPIHDDFWDQDIFSQLQDHQSQPHTTQNIHGSVMYEFLDTPQQNIIQPPPYTSPRNAYEPHYQSTY
QQNSMPNYGYNDPNQAGASNNNYFSYNDPNQAGPSNTNYPPYSNPQYPMYTNQNYNHPPTPTNLLSHFSPASLNSSDQFL
DMGWPTREHDVSLSLGYGSQIQSAADNNDEDQHDPQVNRGRNRRRRGCGTAGHL
>31226952_Aga#DNA/P gi|31226952|ref|XP_317799.1| ENSANGP00000014340  [Anopheles gambiae]
YKELNALKIENKTLKKELEKNKRRSIEPVEFVAKIKNIFKGTLSSNQIDLIMKEKKRVQWTIEEISSALTLRYFGKRAYR
YIAIDLHYPLPALSTLQKYARKINLKQGVLVDVLVFIGNFSSGLPRQDRECILSFDEMKVQRVLEYDQSTDEILGPHDYI
QVVMARGLFRQWKQPVFIGFDTKMTKEIMVDLIQKLNEKGVNVAAIVSDNCSANIGCWKQLGAHDYFNPHFEHPITKKNV
YIIPDAPHLLKLIRNWLIDHGFRYKDKNITIEPLRLLVDSRLGSEYTPLFKLSSKHLNMSSHERQNVSLAAQLLSRTTAT
TLRRYSINDDAKHLAEFIEKVDLWFSVSNSYSPKASLDYKKSFICSEDQVKALDDMFEMVDNMRVIGKNNHQTFQKSILM
QITSIKKIFGDMVQKHSIKYISTNKLNQDVLENFFSQLRQRGGVYDHPSPLACLYRIRNIILGKSPSVLLNQTHIATKDN
DDEQQIPETDSHTHRNDHRNEHFVSAIMYSRANIEPSLPDMNVVEKDTNLFYDMNDNSSTDSSTITEFNEQEEDGFEYVV
GFLGRKFKDNFPDLYLGCYTFENDTEHSYSNPPSFVQHLSVGGLFQPSITFLDVCREMETIFLKTHKNGQFSNKKSIVRI
LTNKISRKLPELPLEIVKAFSKQRIIIRMRYINLKNKEELNKRQALKRKAHDENRKGAKKMRKIVN
>ProtoP_tp#DNA/P 1176-3788  named Hoppel (gi|23664272|gb|AAN39288.1| transposase) by Anxolabehere in 2003 [Drosophila fruit fly genus]
MAHLNNLMDMAKKKRRYISGNKCSLSHCRKSRRDFPALKLFRFPERDPTMLIRWAEKCQFTEDFVASTSSLFLCQDHFSP
DDIGVKYLKKGAIPDRNLIKYKSCNNADINLNAVGSPPRKRHRSQSPVEVCRQCHKNAKTLKVFQKKYFAFKKLSDERQI
RIKMLRKENSNLKRKLVRLESKTEKNIYSEIDKINLTGNEKILAKMLLKEKKGTNTRWNDCEKLFAQSIYYRSTSTYTFL
RDSLKLNFPSPSSLQKWNSIKKLQPGDNECLYSALKEAIKEMNASDKECILACDEVAIKKNLTYNVSVDIIDGIEHLLDR
SNKIGSHICVFVVRGILKKWKFILNYFVAETNIKGDCLKSLIYKNIIIAETIGFKVRGVVYDQGGNNRKCTSLLEVTNEK
PYFTLNNKKYYMFYDIPHLFKSVRNNFLKANFETPDGLVDFDVIREVYELDHGSVTRMTKLTRSHVNPTRFELMRVCLAT
QTLSHTVAAAIKTCNQNKQLHRNSSEVAASTAAFVQKVNDYFDCLNSRVLTDKNPMKCALQVNNGVWNKLKEMQEYLKSV
KYHGNKIYCVDGLIQTTEAIFGLVEDLFKDHTDHFFFLTSRVNQDPLENIFACVRAKGGNCRNPSVNEFNIIIAKLISLH
IFKFSQKSNCESDDDVMLPIEFDSIIYQPFIEKKEIQQQEYSVSFSKIVQDNERYFDQNIDNFLCNDVPIELTSSRYFVG
YIAKGSSCDKCRSVILKETEHLTAPSELFIHEKNYSIESDFGKLKAPSDLFFNICKIHIKAFENIFKNNKKQMCIKKFIV
EQCIKCTNESSAFSLWFYENNECYAHRTDLLNKLIKVLLFKHCKWTVIADRQKKQAKLSILSHK
>P_Dsubsi_tp#DNA/P gi|20384706|gb|AAK54378.1| repressor [Drosophila subsilvestris]
MKYCSCSRKHVQGVKFINAPKCLVRRSLWEQTLGCSLGDNSKICDTHFNASQWKSAPKRGKVFKRRRLNDDAVPHRDPEP
EPKIFKLGYADSSTQTEDKVINRNTLLEKESLRKQLRLMEKEMLSLRQQLGEYQELEKSLGKIFTETQISILKSGGKRAL
FNATDMSAAICLHTAGPRAYNHLYRKGFPLPSRATLYRWLTDVNAGTLDVVIDLMENEEIPEVDKLCVLSFDEIKVAAAF
EDDSSADVVYEPSNYVQLAIARGLKKSWKQPVYYNFNARMDADKLLSIINKLHKRGYPVVAIVSDLGAGNQSLWRELGIS
ETKPWFSHPADEDLKIFVFSDTPHLVKLIRNHYVDSGLVINGNRLTKTTVQQTISHCAKSDESILFKITDNHINIDSLDK
QKIKLATQLFSNTTASGIKQCYALGYEVDNACETADLFKIFDDWFGVFNSKLPRANSIEATQPYGQQIEYQRGILAKMSE
IMRMEIVGKAHKLPFQEAILVNNTSLDGLHGYLSEKYEIRFISTSRLSQDIVDNFFGATWSKGGQFDHPTPLQFKYMLRK
YITGMTKFKQLINK
>HARB5_ZM_p2#DNA/PIF-Harbinger 2953-3684_R  [Zea mays]
MADNNTNTPFRPPAASPNSGNQIFPPPMWDPQMWQAQGFDPTQASTFTTPTNSHMTNPTWSQGPNDPSAYTFRTPWNPYF
GMTNPGGPPTQTSFGQPQLVPPIPCPQVSTHVPNQTDPITFESEAEHSVQEVNSPTKPSDTPGTFRRTKEQNFKPDEDLL
LCKTWLEISSDPVISTGQRKEGLWARIEKRYNELRGEFPLRLNRALSSRWDKIRAETGKFAGFYARVLRENQSGLTDNDK
VHLY
>Harbinger1_DR_tp#DNA/PIF-Harbinger 977-2128 [Danio]
FVIVVSCLLISTSKSWNVIVYAKTIQLLILFPFCCRTTWIRQRSDVWWQHVLTSWTDCEWKDNFRMGRAAFLQLCNRLQP
HIQRQTTTFRKPVPVEQRVAICIWRLATNVEFRTISHLFGIGQSTAVSITNCVASAIVKNLLSIFIRTPSEQEFESIIQG
FRDKWGFPQCGGAIDGTHIGILAPPVSSADYYNRKGFYSVILQGVVDHRLMFWDINVGWPGKVHDARVFANSSLFDRGQG
NSLFPPNIERFGDVDVPVMLLGDAAYPLMPWLMKPYPENQLTTPAQSTFNNRLSKARMTVERAFGPLKGRWRCLMKRCDC
HIDNINSIISACCVLHNYCQLYGEDCDEIATDDENVNSDWNSCHSATRSNATRDALCSYFSNL
>Harbinger1_AG_tp#DNA/PIF-Harbinger 452-2931  genewised with Harbinger-5_BF_tp, 2 introns (806:874, 953:2344). [Anopheles genus]
MSEPELENDNNEVRDRSRSRSRSPQARRLWVQDLFLNRNETGNRLLTDITTSGIYETMNRFLRMKKEDFFHLLSLVGPKI
AKMDTDFRKAITEQERLLITLRYLATGETFTSLQYVFRVSRHSISRIVKETCACLIEALRDYVKLPSTEEEWLAISRRFE
QRWRFPHAIGAIDGKHVEIICPRNSGSEYHNYQKFFSIVLMVVVDADYNFLWADAGGKGGISDGGIFKNTRLYHKLENDQ
LNIPPATPLQVPYQTPVPYFILGDKAFAFTNYCLRPYSGVHPPDSMERTFNKMHSTCRMPVENSLGILANRWRVLKGIQL
QPDVAKNIVLTTVYLHNFLR
>P-29_HM#DNA/P 152-3058 via genewise with P-13_HM#DNA/P, 2 frameshifts and 1 intron (2754:2826) [Hydra magnipapillata]
MVNSCAAAGCTNRAMKNDNRAFHKFPINNRELCKKWIVAIKRETFIPTEHSRICSDHFLPSDYNIPDFNNKPKLKPFAVP
SIFIDSKPKVKRKNEIYINSVISETTESIDCQVDINSTFNIIKSSNKIINDDTIISKSTLSTNASPTKAKLKAKIKILKQ
KLRRKEXKINSLKVMLKNLSKKKIVSEDAANVLCENFSGLTFDIIKNQFKNNTSLPKGHRYTDEIKKFAITLHFYSPKAY
NFLRPILHLPASSSLANWTSSVDCEPGFFEDVLSYISIKAETDINYKDSCALIIDAMAIKTSVLNDKKTGXYHFIGFTDY
GKDIVAIEPDTPATEALVFMLVGLRGHWKTPIGYILCSKITAENLSCLIKKALTISSDKKINVRSITFDGVNVNFNSVES
LGCTFGKRLEKINGRFTFEGYNHYLYVIPDPSHMLKLARNALCDLEVLKDCDGKYIKWSYIKALYEIQEEEGLKFANKIS
IKHIYFQRHKMNVKFAAQTLSSSVADAIEFLMFSKHPNFKHAEGTINFIRVIDKLFDMLNSKNLFSKSYKKALFLNDYPY
WNSTFDQIINYLSKLTDANGTPLLKHRRKTFVLGLIVAAKSLQHLAYELLTLNVHPFKFCLTYKFSQDHLELLFSCIRGM
NGFNNNPDVIQLKSSLKRILLRNSIVGSKHANCLTFEDIANGSIFALKWSKKSAIYSNPETDFLNFDIDIVTIQNYLDNT
SIYKEAILGYISGFIVRRLLSKITCSVCANSLISQNNFVEHSYGTSALSLINIKNRGGLIAPRNDVIQTIIVCESVFKFL
IIINxIYICxRIFTQIKIMSxNLFNKIISEKHFFKDLNDHDAEHEAVTEDMHSTQLIKMLANDFFTIRLQRYGQLYTEKV
LRKSMIGLRQQSNKLIIFKGL
>P3_AG_tp#DNA/P 732-3117 wised with P1_AG (one intron) [Anopheles genus]
MTAPLKECNQPNVEFQTDSEYFSDVENVPSQTIIDMKRELDQVKEDNRKLIEVNTNLRDKLHSYFNENKRLKAEIDNLQK
HISKKDAGIDEAALVTAMKERLKPTLSENQIDIILKKKKRVVWTKEEIGSALTLKYFGLRCYKYLAKDRKFPLPADATLK
RYTKNLVVKEGILDDVLKLISNLTSTFTEKDRLCALSFDEMKVNRIIELDKASDEIIGPHNYLQVVMARGLCNKWKQPVY
IGFDKKMTKEILLKIIEKLSEININVVAIISDNCSTNVSCWKELGAKDYERPYFQHPTTLNNVYVIPDAPHLLKLLRNWF
LDSGFTYNGKHIKADLLFDMIASRNETEITPLYKLSKTHLVMTPQERQNVRRAAQLLSHTTAISLRRYFKNNAEATDLAN
FIEKVDLWFSISNSYSPFAKLDYKKSYTASDDQIKALDEMFEIVSNMTVIGKHSLQIFQKSLLMQITSLKLLYDDLHKRH
NISFISTHKLNQDVLENFFSQLRQIGGVYDHPSPMSCIHRIKMIILGKAPTFLKNQTDLEPSTFSCTDEYISSQIRTSIE
IENEGSEQANDGDIISASIITSALNQPPVKQSIQSDTLSSRSSEMLSSVSSSAIELPEQDSDGLEYIMGYIGRQCFEKFP
HLNLGNLSLNLNSDHSYSHPPSFVKHLSVAGLFVPSEAFLKQGYKMEKIFQKLHPNGNFNKKRYISKRLVKRLQKEFPEL
PLIVVQQFAKHRINIRIKFLNMKIANEKRVNNKRKAPSHSKTAKKCEKLQISCFV
>50746565_Gga#DNA/P gi|50746565|ref|XP_420555.1| PREDICTED: similar to THAP domain containing 9 [Gallus gallus]
MRQFVCLLHLRHHAAYEQLRKVFPLPHPASLSNWLSNDAAAPGFSNDMFLQLQEKVERGEQAYCYCALMVQEMSLQKCQE
WDRQSQRLTGFIDLGAGSLNADEAPLASEVVVVMAAGISSPWRAPLGYFFVSGVTGCLLAQLLRQAISKLNNIGVTVLAV
TSGATACGAETARALGVRINPQRIRCAFHHPPSSAHCIAYFFDVCHALHLIRNTLQYFQKIQWLSDTVQWQHVVELATLQ
EEKLLGPRSGHPVSKETYQLKVNLAAPLFSEGVADALEHLQKLGLASFQNCGGTVKFLRTMSRLCDVFHGRGSYGSGLKG
PLLAGNYNKVSPLFHEAKSFFVTLTDSTGRHIIKSKRRLGFLSFLLNAESLKWLYSNPVLQEGAASPRLLTSAFSLSPLE
RFLGTLRQTCSAGSGNPTCATFQAAYRKVLAGCSLAPDALHSTASISSLDLSLSHGTDLTLGSIRSQYSPARGRMLAAGL
PCAGLLLRDSPLSNALTDLSLHKQSITFAAGLVAEQLASNLQCEACVASLFESDRSRLRCGAVLYIKKLHGLSLPSASVH
HVAHISEQVLSRHRQLGDDHKNSKLQYLSLEQKIFHELLGQNHLFPTLSEHLLEGELHIDNHYTILVKGIAECYLNIRTN
QAQKLNFNYHCSRHKLKRAKGKHLFFSQLGSCWSSQTHAGS
>P-1_HM#DNA/P 400-2961  [Hydra magnipapillata]
MVNKCVVTNCKTGYSTGPKKSTFHFPEESSLRERWIYFVNRKDWLPSKYSAICIDHFEDKFIKYGKRCTMKWDLQPVPTI
HTDKKSSSSTLRVPKLPRKEPTLRYLGKDEFSDFQNIDKIISLNSLKEQHCPPGFTFKKLHDSVVFYKLCFDEISGIPTV
FESITVNKDLNVSLSYKGYHISLPEWFRSGHNCKLTNCSMIENFPAHIRNKANAFNSILTELNEIRYYSPQGRPPYSASV
IRYALILRHTSAQSYKLLLEQLPLPSFSLLRKIQSGDINAFKAIKVLLQKNCVSSDCVLLVDEMYLQKAAQYQSGKYVGE
DSESNLYKGIVVFMIVGLQKSIPYVVRSSPEVYITGSWLKKEIDECIISLHQSGFKVRAVVADNHSTNVSAFSEFHKAYN
GDGKLFICHPVYNGVLKTYLLFDIIHLIKNVRNNLLNAKKYVFPSFSFDLFKDKVEVPAGYIAWSLFHKIYEKDQLLNGN
LKKARKINYQVTHPGNNKQDVNLALAIFDETTTAAILSYFPERNDAAQFLSLFHKLFITLNSKQKFNTSNQLGNAAVKGD
NKPTFYREIANWIDIWSKCDYFTFSKQTSLALITTLRATASLIDDLLEEDYTYVLTSRLQSDPLELRFSKYRQMSGGRFL
VSLLEVCNSEKILAVRSLLKEDINFWEENIYQTFDNSSLENIMQEIDLLSTEILECQLSEDSMEVAVTIAGYVAKKLKKK
FGCHTCNQKMVSTDQDILNNEYLKILSRGGLICPSQPLSDFICHLFSILDVISPILIKHCSYSFSIKSFAEQIFKNYYSS
VDFTCDNHQELGIKYGSRIVINIFYNNLQKETTDSVRKDQVKQFKKRQRTNNNS
>P-12_HM#DNA/P 1007-3465 via tfasty with ProtoP_tp, 1 frameshift and 4 stopcodons  [Hydra magnipapillata]
IFVCFDLKFTCYxIYFRYPQYFAFIENSKVILFDVSRSCLPETIFSVEINCHSRQVNIYCRHTKVNCYDLLSFSHCLTRW
SQLEAIVKRVCTSSPEIKDEVLSLISQIENTYSDTSEEISFLIEQLRLTTYSPNGLRFSTLCIRRALELYLSSRCCYRHL
RNLLCLPSPKTLISKLGRVGEVGNEKECNNTIKVVFENFNSSEKRCCLLFDEMYIKPSVSFRGGHLIGYSEDNPTKIAKT
LLVFMIKPMFGKPSFVCRIVPIFKLSVHFLHDLIININKQIIDAGGELLCLLSDNHPTNRSVYQSFVVNKSFPWQGVIEK
EKPVIMLHDPVHLFKSIRNNWFTEKTQTISLKINNQPLSGDWSHIVQLYNRQKICVAKTTKLSRKSVYPSLIDRQNVANM
VAVFNEKTVAALRLANFENTACFLAPIVSLWNMLNVKRKGCDVLLNDINRSPFQTLDDLRFKEILAFADATSKMSEGKGL
KRHNTFTPETKHALVNTLQGLVELIKKLLSEDHQYVLPGIFQTDRLEGEFGIYRxNYFCVTYSxENCCRFEIxKTNISLI
YLNVLFFNIHKFNDTFLFDNCCFNYNLILGSTQFIWLYLFANFLLICRQLSGGNYFISAEQVLNSLHLQRLKLFSKIVSL
DETDIHCSRIHSDCCTMDLMEEDIIYLDECLINADNESINDQENAALFYMAGYVQHKIDPQRVVDTTTSQSASSEFTDYV
SRGKLRYPGDTLLQFICVCYLLFNSVPMSEKRFQCVVYLKKLFLFLHSTLPFDLETDSIGISKVISIITNCFLKGVTTLD
NTSDIVSLNIEDRKRKKLNT
>P-6_HM#DNA/P 826-2607 via tfasty with KBOC_DB_tp, 2 frameshifts and 1 stopcodon (fragment)  [Hydra magnipapillata]
MFEHLNVMGDHTVGCAVYSPDIITRAFEYFATSRSTYHRLCYDYQLPSIRTLTRITSKINSQDDLTFLSSVLSNLDEKKK
KCVLLIDEVYVKAALLYQSGSIFGKAVNNPEKLATTVLSFMVKSLYGGPEFLARVLPVSNLTSDFQQEQCKLIVDTIESS
MSNGKVIAIITDGNKVNQSFFSKFKTVDGKPWLCQNGSYILYDYVHLLKCIRNNWLTEKLGQLQFTQNEITYIANWRDLV
NLYTLEKNQLIKLSRLTETSINPKPIERQKVSTCLQVFSEETVAALKTHPKIDQESVKGTIIFLELIIEFWKIVNVKCPG
ANARFRDESRNVIRSSDDINLKKLLAIATMAEYMKPTSGKRIRQLTRDTSNALSHTCRGLIDLSCHLLSSGNEYVILGWF
SSDPIEKCFGKLRQGSGGTYFITAKSVIEKVRIQHAKLVLQLNIEVEGNDGHDCLLCLKDLDDMEIDIIYNLPDLEDSIN
IEIFYAIVYIAGYVQKCSTEEIGEDTTTYYEKYGTYLNTLNRGGLTIPSDTLSQWSLFCYIFFSLLDKKVCRTFLIRQLC
FYCRVVxFFYCKETMPNTSKHFFKELCITSHSQK
>MuDR3_SM#DNA/MuLE-MuDR 460-2184 [Schmidtea mediterranea]
MTYTNKDKAIDFIKSENTWSYHYENRTADSKKVYYRCNKAKLRGKQCPAGILLQIHLNNECVDLYRTGADHMHDNLLDNN
RLTEEMKEEIKTLYDLKIKPKAILQKLREKGLHPKNKSQVSSYLKKLNKLKYGSTKISLGELEQWCIDHSNIPEDENESF
VAAFSIRYGNEENEQEMETEDEEEEDEYNFRVLISTKRLLKLAKKTKKIHADATYKLNWEGMPVLIIGTTDMDRHFHTFG
ISVCSNEKTKDFIFIFESLVNSLKNLGENIHFDTLISDASNSIRNAFKKVFGEDSNLIMCWAHMRRNVVKHLHLVEQEFR
EDILNDIDTLQLASNKIIFEKAKQLFIKKWLQKKQNDFIDYMKEMWLTTHQNWYEGALSNTPSTNNALESFNLVIKKEDT
LRERFPLSRYFKLCLDSVKKWSNLYENNDKVFVESPTIDLKKWTDGYHWAKSSKIITSKTLSNCVEYYCPAGNESKVSED
QIQNVKDMRWNTFDQFRKRSSVVWIVNISLDGAKWKEGTCTCPSFLKEYMCKHVIGVSIRLKYVKPPPAAKQIPIGEKRQ
RGRPKKTTKALLVD
>MuDR1x_SM#DNA/MuLE-MuDR 747-2102 [Schmidtea mediterranea]
MLEFVTSQKGNRKLIVQGYLFTKHSENSDGKSLWRCEKRTCTARVHTKDDEIVHEVATHNHTVTHGQVEVEKARAGMKRR
GETTDETTRSIVQNELMNVPVSAAHLLPKRTTLARDVRRHRQKVGPNDQDDIMRYSLTQSNRPFIRIRRDDMIIFAAQDD
LEFLSRCEHWFADGTFRVSPNGYDQLYTIHGFINGEVFPVVYALLSSRTEEAYQHLLQEILILKAGLNPASIMVDFELAA
IRAFQSTFPTATITGCMFHFGQCVWRKLQAEGFSERYRNEPDFALLVKRLLALAFVPPQDVIDLFEHLIEDPAYRDIEVI
CDYMEDNFIGRLRRRRRGPPRFSIQLWSQFSRVIDNLPRSNNAIEGWHNAFNNVVGFAHPTTTKLARKLQQEQHSNQLLR
RQLELGTTAGKKKKTYIRVNEALHTMVTDYNNRDSITYLGDIARVLNINVV
>MuDR3x_AP#DNA/MuLE-MuDR 494-1948 via genewise with MuDR2x_SM#DNA/MuLE-MuDR, 1 intron (1458:1547) and 1 stopcodon [Acyrthosiphon pisum]
MDKIQILKTDRGGLKIVFKDYMYTKQKNLANNKIRWECVEKKKKNCKGSVTTDQMIFNVLKNIEHKNHPPSPAQIEVAKV
MLNMKTKAQDNFDTPSRFFATETSNLSNEAMVLLTEEKSVKTSLRRIRNKKYPSLCPLSELKINGIWATTGGPEPKPLLL
FDNENNTNRIIVFASPEGMSALSKSVKWCMDGTFFTCPKEFYQVYIIHACIXNTYIPCVYALLQRKTKEIYIELLSTLRS
MLSELKLKTISIDFEQSMIQAIELVFVDINIQCFYYHLSQCIWRKVQNIGLATKYKENQNVRQIVGMLKGLALLPLKYVK
KGMSVLYDLSNDLNDPDIDVLLFYFDRTYVNGTYKRTTTKSNGLSLWWSSPIFPPYLWNVHNAKKKNTGRTNNISEGFDN
KFKSLIRTQHPTIWMFIEALQRSDSLANIKLLNIQTGTVFTKKKNKYQKRIKICV
>Mudr5_OS#DNA/MuLE-MuDR 904-3699 [Oryza sativa]
MFCRTAKLGFFVCTSLHAVSWIEGFVSSLLGDGSDEFTVKVHRGGFFVGHGNLRSYLNGKVSWFDNVEIDTWSPLWLDQF
VEDLGYLRTPTLKIYWLLPGKDISDGLRVVVSDTDTNVMASMVEKFRTLVVYIDHDDKVAGIDWDDIIDNPGTPLPKVIS
PNKVNCVEKIIGESSKQQEGNLKEQSSRQQQGSRQQQSNLKEHNNREQQEDDCDEEDSGTESDDSDEEFYDSDYELDDGD
DDLFVDYVDENVIDEGVAKGKKILKGKKARGSRLKGNLAIVPRGDESEDTDEEELNAADSDDEGVRLKFKSFAEEDLNNP
NFKVGLVFPSVEKLRQAITEYSVRNRVEIKMPRNDRRRIRAHCAEGCPWNLYASEDSRAKAFVVKTCDERHTCQKEWILK
RCTSKWLAGKYIEAFRADEKMSLTSFAKTVQLQWNLTLSRSKLARARRIAMKTIHGDEVEQYKLLWDYGKELRRSNPGSS
FFLKLDGSLFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYGGQLLTAVGMDPNDCIYPIAFAVVEVESLATWKWFLE
TLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFPESEHRFCVRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVM
RNLNKSAYEWLEKLPPNTWVRAFFSEFPKCDILLNNNCEVFNKYILEARELPILTMLEKIKGQLMTRHFNKQKELADQFQ
GLICPKIRKKVLKNADAANTCYALPAGQGIFQVHEREYQYIVDINAMYCDCRRWDLTGIPCNHAISCLRHERINAESILP
NCYTTDAFSKAYGFNIWPCNDKSKWENVNGPEIKPPVYEKKAGRPKKSRRKAPYEVIGKNGPKLTKHGVMMHYKYCGEEN
HNSGGCKLKKQGISSEEAKRMVATAKESLAMEIQQNIIEQEPNVINQVKYH
>MuDR4x_SM#DNA/MuLE-MuDR 102-1601 [Schmidtea mediterranea]
MVVISKTRRGKPLLIEGEYQYHLNSKNSAGTKMYWLCTKREICKARLVTNADLENGITIFHSTSHAHIGDESAPEVRSVT
EKIKARARAEPNSHPSHIIREELRGVTDTEVILNVSETNSLVKMVNRVQNSARPNLPASVSSCLITQPYNQTISGDLFLR
FDSGVHDSNRVLIFYSDLGLRSLCRSTQIFADGTFDTVPRIFFQLYTIHGEVFGYTFPFVYVLCLRKTRSVYESIINHLK
EASIRLNITFSPETIMVDFEMAAIMAFKNMLPNSTVKGCLFHFNQSLWRRIQENGLSVRYRNRQNTDLQGLVVALMALPF
IPEEDVAGTFKDLVAFAPPELNDFIEFYGRTYIGLIRNGDSWTSVTPRFENTMWSCYNSTLSGHRRTNNVVEGWHSRFHG
EIQSHHATIWKFLEFIKKDEADNKILIEQLFGGHRKIRHPIKRMYLVNNSRILELVRSYGEFKNSGTIKIYLHSIGRLLK
NNFTYIPEQDHNQPNMNEH
>ISMca5_Mca#DNA/MuLE-MuDR ISMca5 gi|53802661|ref|YP_112568.1| ISMca5, transposase. Almost identical one in Plasmodium yoelii. [Methylococcus capsulatus str. Bath]
MPSKKKPAAAGMTALPSIPHELIEQLTGGATPMTAEQINATTMALKKALIERALGAELSYHLGYPPGSARPEDAANQRNG
KSAKTVLTQDGPLRIEVPRDRAGSFEPILIPKHERRFTGFDDKIVAMYARGMTVREIQGFLAEQYGTEVSPEFISCVTDE
VMAEVTAWQGRPLEPMYPVVFFDCLRVKIREDAVVRNKAIYLALGVLPDGTRDILGLWIENTEGAKFWMKVFNDLKTRGV
ADILIAVTDGLKGIPEALGAVFPATTLQTCIVHLIRNSLDYASWKDRKALAAALKPIYTAPSAEAAAVELDALEAGPWGQ
KFPTVVATWRRAWDRVIPFFAFSPAVRRVIYTTNAIESLHSQLRKIIKTRGHFPNDEAATKLLWLALRNITADWGRAARE
WKDAMNQFAIA
>37537156_Osa#DNA/MuLE-MuDR gi|37537156|ref|NP_922881.1| putative far-red impaired response protein  exapted gene? [Oryza sativa]
MDEDEVSLEEMEEYNMVASKLFRSEEDGYKFYNEYARCKGFSIRRDKVKRFSGTELVFWRRFYCSCEGYRTLKNFERTNR
KREPRALTRCGCKAMLEIELNGETGMWFVSGFEARHSHRLANLDLVAFLRSHREVNDAQKAEAVELGVGGLRTCQIMEVM
ENNNGGYDKVGFVTRDLYNFFARYKKKRIEGRDADLVVNHLMAQQEQDPDFFFRYSIDEKGRLRNLFWADSQSQLDYEAF
SDVVIFDSTYRVNRYNLPFVPFVGANHHRSTVIFGCGILSNESVSSYVWLLQTLLEAMHQKHPKSLITDGDASMAKAIRK
VMPNTDHRLCSWHIEENMKRHLRRQKLADFKKFLYDAMDVDDFERCWIVDDITLAIECSKSSQIQKDKNVQDITRDSEES
KQSESCIPTDKDVQDITSDSKKSKQSESCIHTDKNVQDIPSDSDIKTSEKRVDSTTHATSHKDRPETESLTRKLIMLIEE
QGKEMKEMKQNQQSMHNQIQSLTNIIAAFKEEKTIPTSKNSKPNVCKSFDKETHIIKKKFKCTAEDEETIKSIMSAPESQ
LVVHIDDVSISQKTMQILTNPVTESSTSYLDDHIFLPMNIKEKHRYLAVIHAKRRIIQVLDSMANSSTQRKELRKVLLEP
EEKHIATQWPDHHITSWEVTVIQNLPLQGDLVSCGLFVLKNMEHWQGNRLSKEYTHEDIKYFRRKLAAILGGAQKKDKKI
N
>33334431_Sen#DNA/MuLE-MuDR gi|33334431|gb|AAQ12271.1| transposase; TnpA; (97% similar to one in Salmonella enterica) [Sitophilus zeamais endosymbiont]
MDEKQLQALANELAKSLKIPENLSHFDRLLKKISVEAALNAEMTHHLGYDKNQPKPGTNAHNGYSTKTVTTGDGPLALRT
PRDRDGSFEPQLVKKNQTRITGMDNQILSLYAKGMTTREIAATFKELYDADVSPALVSKVTDAVMEQVVEWQNRPLDAVY
PIVYLDCIVLKVRQDSRIINKSVFLALGINIEGQKELLGMWLAENKGAKFWLNVLTELKNRGLNDILIACVDGLKGFPDA
INAVYPEARLQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEEAGLQALEAFSSAWDIRYPQISRSWQANWANLAT
FFAYPTDIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDDAVKKVVWLAIQAASQKWTMPLRDWRIAMSRFIIEFGAA
>Arnold2_pt1#DNA/MuLE-MuDR 7603-8550 R Arnold1,3 close [Arabidopsis]
MSTKKLFFPKRLFQPGSEVDNITRVSKHSSFKIVSTVRKALEPIEFNTLMDTFLGPIVEFAKMDLAFSSHIVHHLLQRRI
LTNNDELWFVFADQPMRFSLREFIITTGLPMDDASGSSPNVKRKKKEKWWIKDNQTLKRKQKKDVWINKEMTFLDLTYVL
EKRSKKMQPEERLRLAGSLLVEGILLARNPTTMLPIENLKRATDFEKFCKYPWAQIVYSYLVTEVKRIGNDYLLRKQYGL
FGFVQSIQIWALSSVQKLGEKFGTRDESSSGNIPLILQWRSTSSPSAKAITMIADGDKVHFLSCGFFYVLNTVYK
>IS1113_Xor#DNA/MuLE-MuDR IS1113 gi|27762619|gb|AAO20849.1| putative IS1113 transposase [Xanthomonas oryzae pv. oryzae]
MLDELTSGCKTPQDVEKLFSQMLQHMINRSLEAEMQAHVGHAPHGRSGGNVRNGKSRKTVQSALGELQIETPRDRAGTFA
PQLVKKRQVRLAGMEEKILALYARGMTTRDIESALVDVYGVEISHGLIAQVTDAVLEEARAWQSRPLEAIYPIVWLDGIV
VKVQHNKQVINKAAHVVLGVNLRGEKEVLGLWLAEHEGAQYWLSVLTELRHRGVRDIYIACMDGLKGLPEAVQAVFPQTL
TQLCIVHLVRASLRYVNAGDSKAVVAALKRIYQSATAEEAAAELEALDTQWGDKYRAVVRLWRGNWDNIIPFFQFVPQIR
KVIYTTNAIESLNMVMRKLTRNRRIFPNDDSALKSLFLAVREASKNWRSIHHWKPALQSFQVMFGEERVPMNAL
>ATMU3_tp#DNA/MuLE-MuDR 360-3353 Via genewise with ATMU2, 2 introns (ATMU5 very similar) [Arabidopsis]
MPLVRKNGVVMRIGSPMLHESENLVGDGVEAPPRGERDEIGEEVGGETNVVSESCGGEDGAQDAAKATPEGEADRIGEEA
RGQANVVSNVDVADVAEVRSPLRRSKRRQIRLEEEAHDAVEPMPEGEANQIGEEARGQSVDVADATAVCSPLRRSKRRQN
RLEEEADVAVEESTRREIGQEEEEALGETSCGGEEEAHDEAQESGVAVADAVEVRAPLRRSKRRRIRDEEEEDLEAEVPA
LDEDDDCAVQGDEDCDEVDDAVDTNREEDDTAGLGVEEDGNLDMERDFPEANGEEEASDNDSGDDIWDEDKIPDPLSSDD
EDDDRVEAARNDLGDPEILLALEKTYNSPEDFKLALLMSSLKTRYDIKLYNSEAMVVAAKCVYVSDEGVECPWRVRCSYE
KRKHKMQIRTYYNEHTCVRSGHSKMLKVSSIGFLFEERLRVNPKLTKHEMVAEILREYKLEVTPDQCAKAKTKVLRARRA
SHDSHFARIWDYQAEVLLRNPGTEFNIETVAGAVIGSKQRFYRLYICFQAQRESWKQTCRPVIGIDGAFLKWDIKGHLLA
AVGRDGDNRIVRIAWSVVEIENDDNWDWFLRQLSTSLGLCEMTDLAIISDKQSGLVKAIHTILPQAEHRQCSKHIMDNWK
RDNHDIELQRLFWKIARSYTVEEFNNYQADLKRYNIQAYTSLQLTSPITWSRAFFRTGTCCNDNLNNLSESFNRTIRQAR
RKPLLDLLEDIRRQCMVRTAKRFIIADRCKTKYTPRAHAEIEKMIAGVQNTQRYMSRDNLHEIYVNGVGYFVDMDLKTCG
CRKWQMVGIPCVHATCVIIAEKKKVESYVNDYYTRNRWRETYFRGIRPVQGMPLWGRLNRLPVLPPPWRRGNAGRPSNYA
RRKGRNEVASSSNPNKMSREKRIMTCSNCLQEGHNKKSCKNATVLSPPKRPRGRPRINEVCISFISIFKNSVSKTDCNVC
IRNHKGM
>MuDR-1_FO#DNA/MuLE-MuDR 164-2710 [Fusarium oxysporum]
MNPVTATRQFSDDCLPPEREYGSREALHAAINAWAAPRGYAFVTGKSKKTESGRRIVFFSCDRGGAPPKASGVRQRSTTT
RRTGCQFSVLAKEALDKTTWRLTHRPGSEFAHHNHEPSTSMSAHPVHRQLSNADRSTINNLANAGVAPKEIRSYLRQNTE
SHATQQDIYNCIAQGKRDQKKGQSTIQALANELEAEGFWSRIRFDEDGRVTAVLFAHPESLTYLKSYPDILILDCTYKTN
KYRMPLLDIVGVDACQRSFCIAFAFLSGEEEKDYIWALDRLRSMYEACSARLPSVILTDRCLACMNAVSHCFPAAVSLLC
LWHANKAVLRYCQPSFMRHNDAAQKPQGHQEWKDFYGRWHELVASANEETFEDRLQQLKERYASAHAREVAYIIETWLDL
YKTKLVKAWVDRYLHFENVVTSRGEGIHQLIKVYLDTSQLDLFEAWRAIKLAILNQVAELRANQAKQQIRTPIELSGSLY
SIIRGWVSHEALRKVEAQRKRLQQDRLPACTGVFSATLGLPCAHTIEPLLQQAQPLQLHHFHTHWHLQREGNPQLLIEPR
RQFDQVPATSTLPKTSTQREPCAFEIVEQASQTRANPKCSRCHTQGHRMSSKACPLRYAHLVSPSASTAPPNTLPPSTTP
SSAQQPVPDPSLCSILPQQQVAPPAALCDQEMVPSPPDIIALPSSSADVPPPPDMPPSVPASGPDIRYDDPRAIYDRYIA
ARMAWYNKLPRGSLKTNQEYRKAMGLPQRYDKTSYSWCLDYKQMGKRCTSTIPGREWTKEEMMAYLDWTRVEDERVERQV
AQEMGDNPLANRRTGMKEIWKRVEQDMIDQQALYSNDKLAEDCIIVTA
>MuDR-12_SBi_tp#DNA/MuLE-MuDR 847-3690 [Sorghum bicolor]
MDKLVRLHHGGRVVRTRDDSVKFEKMSEQLLIFGESPTLAQLLEEVKLKLGWNDVDFVQIQGVIDVGSANGPRIKRLLPI
SSDLEWTHYKAVVLASEVRSLDLVVSKESSVRVECRPSPARVDVGPSLEEEIIVTQPWYGDSQVVVSQEHDEYGGAEGLG
FPEHGVGWAEDDRYAEDNTMEHRDVQGNTDNEDNDDSYVIGDSEKGLDDASGDDSIDDDLSDEDDLSGEEEFGDARATNR
LDIEVDGDDEIFEDVADVDSDDDRPVRRLTEREIEILRRVLPDREPSIGDFEDLSHGHRAFADGGLNESSIPDVSVCPII
RKGLLFATMDELKSWLQEYSILHHRPFRVINSYKEKRYTVACEEQLCQWRVCARKTRAGKWKITSVNQPHTCASADAEDT
HLQLNSRFIARQLCPIVKHMPTITVSALVETIFQLYNYYVKYGKAWRAKQRALEIIFGNWEEAYERLPVMLNAMKAANPG
THFEYVPKEGESRNGREVFGRAFWVFGQSIEAFKHCRPVVSIDGTFLTGKFEGTMLICIGTDAEDQLVPLAFAIVRKEDT
DSWCWFLRLVRQVVIGPGRDVCVISDRHAGILNAVEEVIPGYGQIHHRWCTRHLAQNLIRRDHTKDNFKLFEEVCRQQEV
KLFNEKLEALKLATNDDGRQFLSDLMPSKEKWTLAYDTCGSRWGFMTSNMAEMFNSLLRGCRGLPVTAIASFTFYKLNSW
FVARKKHARSLWLQGKTWPLLATEQLAFSKRKSKRQKGSCFDPIRHGYEILEGGGTNIGGEDRGARKHKVIINENRCTCG
KPRIYHRPCSHMITACRLRRVDAEIPPRMAVEFSLTNLRSTWHPQFEPFLDESQWPTYDGPKYVADLGLLWKSRGPRRRK
RFKMDMDRATKGRSTSSKVGTHFVEDTQKSRCSKCHKPGHNRRKCPQLIREEVLLRSFYMCYNFHNC
>MuDR-12_SBi_p2#DNA/MuLE-MuDR 4011-5638 via genewise and tfasty with MuDR-9_SBi_p2, 1 intron (4665:4753) and 1 stopcodon. [Sorghum bicolor]
MTHEAATSMVYDERYTPLLKRANLAAVARVCRRGTPPFNPAALTALIDRWRPETHTFHLPCGEMTVTLEDTAMILGVRIR
GFPVTGDTESEGWENRVHNFLGRALPELEAGKKRRSSGVPLRWLREQWHQCPPDADEATVNYYCRAYVLHMFGTVLFPDG
TGDTASWMYIPCLQNWDDAGNRSWGSAILAFLYRQLCEACQRAGGTHSTMSGCMTLLQIWMWERLPVGRPHRMQQPPAWF
PEGDTIVAPTVAHLYERTSGVYHVSRHAYISYTNEMDTLQPQHVSLPAIYLTCSNLYGHSTQRSRCFQVEWRPYRRERIL
GLALSTVCRADEDLWTMRCPLICFYAVEYHLPHRVARQFGRLQPCPPEDFSTSWQLHRYLAxILKVDSSISLILMVLVLT
ISRFDRLNRQRQKKITNWQAEHQRYIDEWLRYEQNNMRIHAVHRDNAFNEYLAWLGPRTRLCLRPAWTEQDIADIASEDE
GDNPYDEATRTGRQVEIAPVLSRAVSPNVFVFC
>MuDR-14_SBi#DNA/MuLE-MuDR 615-3557 via genewise with OSMU5, 2 introns (1590:1668, 3228:3298) . [Sorghum bicolor]
MDPDSSFNLEMRIVVPNSRARWFCVNEVVDADRTHFSGMLEDVVDKYPPNYGDVASLFYFCRDSKVHIPIRSDQELVEMF
DKHRVYRSCWLTVAYHKENSEPPVLPNWDFGEPNNPAPSPDTPTIPEPTPLEPSQTTNTDQAGPSQPSYDDDHNDDSIVD
DDGTLANPNPMFEHVGVDDESLYIDLGPQYQPAPPNPSTGRKQREEEVEEEEEEEEDSSGDEMLSDSDANVDDVSDDEIV
ADRVPEPKPDAHYDKKDPPMSVGTIYSNMAAFKIALASHSAKHEYHYLIEKSDPGRYRVYCKYKDEFNCPWRIHASTLRD
GVTVKIKKNKDDHECQSARRVGICVGLDQYWVADKVADWLKEDANIKMKELIRRINEEYKVLLTYRRVYKGKNIAMDRIY
GPWDRSFNNLFRLQAQLEQSSPGSSLIIDYHTVKDKIRFNRLFFALKPCVDGFLRGCRPYLAVDSTFLNGKFRGQLCVAC
AVDGHNWMYPVAVGVIDSETNENWVWFMQKLREVIGSPAGLAFCTDCGQAVMNGVSEVFPEAEHRECMYHLVQNFKKRFN
GQVFDDHLWAASYSWSPYMFNKHYQAMAAARPDAMIYLADNHKKLWTRSQYRTTSKVDYVTNNLAESFNNWIKLEKSKHL
DDLLDTIRQKILIKWNHRKRVAMKFTGKILPHIEKKLREDSYNLDIEVITDSPEGVAEICAKGGSGYRFVVNLPERTCTC
RAWQGSGIPCKHAIAYITSIPHARLEDYVDDYYSVSKFKAAYAGSIPCIPDKSMWPESKHGFFMHPPCLRPTAGGRHKNR
MKGALEGGNSNRRRHECPICHQKGHHWYTCKNGDPEDIAAMLAERGVPKKRQKKATSTNTETSLVLANPTSSVMQFPSNE
AVEKAREKKKNKAATTSGGAAKKRKVTAATTSGGPSNRYNLDHLSVFPCIY
>MuDR_ZM_mudrB#DNA/MuLE-MuDR #ReverseORF from RepBase [Zea mays]
MDCPPSKVVADAVEAARAAAVAASEARCAVFVAEKEAKAAVQFAAIAVEKVEAVKASSNVDLVDFKYHVSIKNSLRYAIQ
EMRRQSKLLHSVQKLCSTIPEVQGGKIGKVRGFLEHVCKELDKTSSICEEDLETKNPTWDLYDNPSVDDEHPLDDDELGD
>MuDR-18_SBi_p4#DNA/MuLE-MuDR 23632-24288 40% similar to MuDR-18_SBi_p1 [Sorghum bicolor]
VSHHLSDILKFANVLSNLSTHQKDLIEKIGFSSLLGLQCLEVPNDLYHWLLEYFDPTKSTLILPNGFSYTFNDKCVHKIL
GIPIGPRRVDGKGTVESCYFFKNQINSIQHTPSVEELCTLIKPDLHGDEFVRIFMLLALSAFLCPNTRSVCSTRYYAELV
DVKSISEFNWCSFVLEWFLSYTSKYKKRKLRKPGSPYGGCCHILVVMCKIxLVALKFYI
>MuDR-11N_VV_p1#DNA/MuLE-MuDR 972-3563 via tfasty with SHAMuDRAV_MT_p1, 1 stopcodon [Vitis vinifera]
MDSYTTVLCYTRSKIIDCEFGVSYNRPPDKGVLINSMITFDELKTKLYHALNINPTYTKLNMVLQYPVPFPNGKGTGNYV
PLPIRDDGDVRIMFTVVAQSPPPNTIEMYCQTSSIDYHPVPSSFTTPLHIESLGPSQHMVEKNTSSPKYMQSYDNDMEPT
VRVDMAGVTESIVMTVGNYVDILPGNDNDNVELFDEDDGNEDIMDMEDNENTENDASLLGGGEHDVPSPIFRELNWDVIN
SIANKDLIARTGLWNESDELFKGLRFESKVDLQYAVKRYSICRNQHLIVIESEPDIWVVKCKKWFEGCNWRLRACRRKCH
GLFEITKYIGPHTCVYLKLSQDHSQLDSIFIAREVQNVVQNDHTISIVALHQIVKDKFGYSVHYKRIWEAKRKAIIRIFG
DWDESYQTLPRWMNIVKLTNHGTKVVWKTSVLAGCNGNIRFMRVFWAFGACVEGFKHYRPVIQIDGIFLYGKYIGKLLIT
TSIDVNGHIFPLTFAIVEEESSDSWSWFLYTLRTQVTQREGICLISDRHAGIQAAIRDPSVGWSPPYAHHRYCLRHVASN
FNDKYRNKMLKDLVYKAGSQHQPRKYEACMTKLKQLDEKCLEWFNRLDTKKWTLEHDGGHRYGWMTKNIAECINGVLKGA
RMLPITALVRLTFYRCVSYFETRRTEIQTQMANGDLYTSYAINKITKYESRVSxHTVNIFHRSNEIFEVTTAPHRFHMDK
GNNIQIVKLKERTCTCNKWQSFGIPYSHVLVVCARARIDSWQFVDKHYRMDVYACCYTLQFNPIPHQAYWPEPNFPIVHP
NPILVRDKRRPRSSRIRNEMDLRELSVKMQYGHCKQEGDNRRKCPNREKSSNTTTRYCKFQLKI
>MuDR-2_MLP#DNA/MuLE-MuDR 207-2228 via genewise with MuDR-5_Mad, 2 introns (899:966, 1679:1751) [Melampsora larici-populina]
MDLNLSMLYPSLQDAEDSLREYTKSHGYWLKITRTIFAQKGKGPARKRVFACAHGGQPRTTDSDVRTTSTRLLGCLWSAQ
ALRDTTTHQWTLKITNNEHQNHEPSKNFEEIPAARRLTKEQATEVIQLAKAGAASRVILSTLKDSDPNNISTPQDIYNVV
KKHRIEHLDGRSSLETLLDELKDEGVFHAYQLDSDHSLRRLFLVPNVCASSAQDLWTGDVLLMDSTYKTNRFNMPLLHIM
GVSSTHKSVSLAFGFMRQETEEDYTWILEQMKAFLGSKILQISAVVTDRELALMNSLHRVLPHSHHLLCKWHIEKNIQTN
IKKYFTDEEWKKFKAKWNQICDSLSPEIFNQNINTLSTQIHTRAFDYITKTWVIHKEKFVLAWTKDIKHFGHTVTSRVER
GHASIKQWVLMSTGDLATVYQKLVLLCQQQRNKVTWKTKYDRTHILNRLKGNIWSEVNRKISHYALLQVYQQYRQALSLK
NDSICTHVVSGSKGLPCAHFIKELIGSSKKLLVQHFDIHWRLEYTVPPIEPLQDIEIDTMLKNIQTQYATLPANRQAVLK
NQLALILSNPTPSVSDPVPIRSRGRPVGALNKSKRDRSAFEHQEAQETAPQCSQCHQTGHNKRTCRM
>MuDR-2_CSa#DNA/MuLE-MuDR 2015-4651 [Ciona savignyi]
MERMFLDEFSLLLPFDDCNSCSVDLYANQLLRKHNLLSSEWVALQTTGDGNCLFNAASICLCGNESLSTELRVRTTLKLV
LGSYEREGIAKGVTFVSPXYREACLDCGKAGHYSSAWEILALSYVIDAPIVSHYPACNGHSDIVLPILNTTFGEDLTGPR
LHILWSRLGQSGKTWTPNHFVALRKDYLQVNHSTPYNTLPFEKFLEQEASYENSKIGRDLTATGESDKDEGLNVKIAVNA
TGATCSRIQYDLMKDSFFKPANKEISAEIMKIEXSESHPLVKNEHPXFKTTNKPDVTISVNSATTGQLHGKFLPTHEAFL
LLTTASKCLEXVPDHAKHNLFFIINNSANIKSKXRNTFYDNCGSWSKCKLNKLIYLKNGEKWTEVRLFNGKYCTRRSKKL
NYVQLVPQPQQSELIVIGTYYTTLKNNSSYKRKVTWIESKEATNKPFALYQYLGTYPGHFPHGNCQNKDVDFVRTKPKVM
EQISNYSNQGKPAKKLYLELKDELNPVDGPRNLEQIHKQRYLSRKLQSVDKKTCKSYEDELLQVISMVQTHEFVRKLSHG
KDVPTSVILFTDNQIADVNRFCLNGKTVWGCDKTFNLGKIHATITSFKNLSVLKQGLHPIFIGPILLHNKSDFRTFFDFF
GTLRTILDGPFENLIFGSDNEKAMHMAAVAAFAGCKHVLCMQHIVDNMTNRLLDLGVEKSNRKEIKRLTTALVASEDEVE
FSANENKLKEFCQKNCPIALPYLKVERIKKHVWEPSKQIGFVWSNNNAESVNHVIKATIDWKQQKLPTLINVLYDIVQSQ
YNDIKKALVKIGPYVLCGTYATFRTTIDDWTKKTKQEKEEYFNKFMKHKTRQIVTVVPGSNAGKKKGQRQRRRPHRTKE
>MuDR-3_HM#DNA/MuLE-MuDR 1635-4075 via tfasty with MuDR-1x_SP, 1 frameshift and 1 stopcodon. [Hydra magnipapillata]
MCSACMMSFTRKDNMKRHALQAHKTIFRDNQSKDKRTPCHYQNCSQVFFQNVKLIKHIEECHEGIFTKESYIFLSESEFL
AWKEKEELNSYVFFSKQTGSFFTGKNINKDVKTSYYICQNDGHSKPHRSVSEPARKTNKRYYRGSVKSGAFCPARMIVKV
NINGVTNVQYIKTHNHSIGITNTMYQPIPGNIKKNISAKLSIGVPVNTVYRDLRESFGDRQNRNDEDTVLTKSHLLTKKN
ISDISRAVKKGCRLHPDDSVSTFLLVQKLKSEDFNSILVYKSQGQQTVIGPKVYDDIDLNKDSFVVGIQTKHQLSMFETH
SSQIVCIDATHCTNQYAFPLVTLLVRDEFKRGYPVAFLISNHADEQTITPFLEEIKRRCNNSVKVNAVMTDDDLSGWNAF
TNVFGDVRHLLCKWHKKRAWRNKLPLVGPTNLQEEVYRILETIIDEKNPDVFLSTMNGFVKAYEHKCPNFISYFVTYxAP
RHLKWTSCYRNFQHADTDTNMLCELFHNKLKTVYMERRPNKRLDDLINLLLTIEENSYWHHKRDTIYLGTISLPKKYKKR
HEKGMLILIECISKCSLTQYTVKSQSKDVTYNVDILTEACKESLCLESCINPACNGLCEHLYRCSCNDIVILYKHVHKLQ
SFLLRSQEKNCPKESLAVGTGNNQVKQKSQTFINESERFQKNIDELSTLFSHLMIINLQLPSINRQLEDMIRQAEAIKNI
NLIEIPTEPTSHNNLLNFEPNKKLDNQWQPNKFKRTRKGNRKKEIKSYQYPAQNQKEEIVLKLSQQHVDLIHDKQNTRVC
DNIEPSDFTNTLIT
>MuDR-9_VV#DNA/MuLE-MuDR 2062-3867 [Vitis vinifera]
MSRCAETEVRPHDLSLCPQPIIGSGHSFPNADEFRNALYTMSLVGRFQYKFKKNSPKRISVCCLVDGCPWRITANSVGTT
KILKVNIFIDVHNHCADVECSSQPSMRGRRGARVIEQVIRATPQYLPRQICKDFRSRYGVSLSYKQAWTYKEMAKERIYG
LPENSYMLLPWLCQRLVDINPGTIAECTRQDGHFWQLFIAHSFSIQGFLMGCRPVIAIDSTHLSGPYRGSLFSATTYDAD
DGMFPIAFGVVSSENYEDWLWFLQKLKGILQDKEVVIISDRHQAILRSVSQLFGVENHAYCYRHVKENFSSYVTKHSMKG
KKCKMDALLLLDSVAYARLDDDYVVAMEKLKTYNSDLAKWVEENSPQHWAMSKFAKKRWDKMTTNLAESFNAWLKEERHY
TIFNLVMTHMDKFAHLACDHMGTTENWKAPIGPKTEEKLLENIIKSGSFPVYPYVGGVFKVFNMKVYVDVNLRERTCTCK
AWQMVGIPCEHACAAIRQMKQDVYEYVDSYFKLPMQELIYSGHFNSIPNHNMPTVDADGCVRDAQGRLYPSLKPPCSKRP
PGRPRHRRIESQFSSKRLTFCSRCQVAGHNRASCKNPLPVP
>MuDR-7_VV_tp#DNA/MuLE-MuDR 1710-4093 via tfasty with MUMET2_tp, 1 frameshift and 4 stopcodons [Vitis vinifera]
MDESPLSLPGNSPSMPNVQAPQSQYDFIEADGQSEIVNVPIDVEDDEDDEDYNLSDFSESDDDIIEDFGMEDDGINRAIG
GKQLEGVWNGEGDSDHGDSDELRSAEGSSDDEGNSRPRFPEFNQRIGMENVQLVKDQKFASHVIFKEALKEWCIKEKHDF
EYKHNDKWRVTAVCKKKCGWKIHASQTQMGDAFQIKSFKSIHTCGKDHKNSKISSRWLANKYLPFFRDDHTWTANALKGA
VFRDHEVDVTLDQCYKAKRMAFKMIHGAEEKQYERLWDYAAAIRKWNVGSTVKIQTTNDVFERMYICLDACKRGFLAGCR
PLIGIDGCHLKGTTGGQLLVAVGKDGNDNIFPIAFAIVEIENKSSWTWFLQCLLDDIGHVDENGWVFISDRQKARNNxCA
CELFIYFLKISxSITxIxITNVYLRIFVWQGLVETFKDLMPNAEHRFCVRHLHANFKKDFPGKVLKDAMWSAARATTKNS
FDFHMDELKKLDVKAYEWLVKLDVRTWSRHAFNPRSKSDTLVNNIAESFNAWILEARDKPVLTMMEIIRVMLMQRLQTKR
DHMRRYEGRVCPRIYKKLERIKSEVGHCISRWNGESKYEVEYIYGGRYVVDLNERTCGCGRWGLSGIPCFHAAAAIIEHG
EQLETYVDIAYTKETFLSCYQWMISPLPSHEQWPKTPYDLIKPPKFTKKVGKHKKVRKREAGEPINAFRVSKKGTAMKCG
NCFQWGHNQRTCKAPDNPNKKAYKKKKKGQLEQSSTSGAKGSKKLLVNFKYYFVELFIQISSTTLLNFFNFFGFL
>Polinton-1_DAn_px#DNA/Maverick 10603-11175  [Drosophila ananassae]
MFFQNEFFVTVLSNDSLNVFPDNVKCAFTNIVNIPETMSDEWEVGITDIYLNNCFGKNHKKLRRDTKENTSEESSSNSSE
FISLVNSETFRYKAAPLKADEIEYGPIFIYTDIIKPRCVGSKRPRCLRVLFTNGREKFMQFRNVEYYPIENYSPNEISIL
ITDSSGYKIPFETSSIPIFLTLHFRKRRKIL
>hAT-1_EPa#DNA/hAT-Ac 472-2693 via tfasty with ATHAT8_tp, SW:1929, 3 frameshifts and 1 stopcodon. [Eutrema parvulum]
MASCXTPPPIDTDXANETVEDVQTRTLAAGSKGKRKDMTGDSSYGLASRKKARSWVWNHYTRDNNTEKCNCGKEMSCPTK
SGTSNLKKHLLSCKSFKVCEAANNFKTNTVLAPDEEGNIAMCKVSEKVFRVATNEMIVLAELPLAFVESLGWRHICSKVQ
LYQPHSRRTCTRELVEMFISRKTAMKTLLGQNKQRLSLTTDIWGSPYTSASYMVITAHFIDTSWKLRKLIIGFKNISDHR
GTTIATVLLDCLEEWEIKRVFCIMLDNATANTTAMKKFKEGFSQVGDDALVMKGKFLHLRCSTHILNSIVKEGLTEIDAS
VAAIRNGIQYVRSSTKRLQSFEYRVESGKMSRGSLPLDVKTMWNSTYLMLDQAVKFRLAFEKMEAEDKPYNDYFLEIVEG
KKRVGPPSTADWEEIERLIQFIIIFYNSNLSLSASNYVTAHKIYAEIATITRNICAISSCPGPDEELRYKALSMMTKLKK
YWNPFCEGTSENANSQDREMNKLLIVASGFDPRKKMKFADICFDKLYGKESIEFNILSESVTKILKSLFDEYDILVIKNA
GTSSQSQGTSSQSQYQVRDEVFERIVLSNGVGYERMDSLYEELVEESGIPESANELELYLKEPIERPKLMKGTDYDVLDW
WRKNSPKFPVMSLIATDIIDMQVSPVASESAFSTSGRVLDPYRSCLTPYMVEVLMCNEQWLKCEIRINEKGLLTIxQLLS
EVHDQDDIMRGNFQYAEIYFI
>hAT-1_DEl#DNA/hAT-Ac 325-2225 via tfasty with Hoyak2_tp, 3 frameshifts. [Drosophila elegans]
MSSSSADKPDCECSSSTDSEKDLEPNRQSNKKKSKISRVWKYFKRSDDKKYAKCLDCGEEYKTSGNTSNLHDHLKRFHPG
VERKSPESSTQVVRAERNVTTSTSSSCRSSMNSVASYFKRAVMYDSNSKRKTDIDKALTEMVAKDVQPYNIVENEGFVQY
THVLDPRYKLPSKTHLRDVLMYNYFTETSAKLSAILVNVSNIAVTCDLWTSSANASFLTVTGHFVYNYELKTASLATKKL
LSTTNHCSQNIADTLRDIFIEWNILEKTVCIVTDNASSMLKACDLLHIRNLPCFAHTINLVVQDALKVDDPVLQALFTKC
KSIVRFFKQNTISNEKLKLAQEGSEYTLLQETPTRWNSSYFMIERIIKMNDAIAKVLQSTTNAPQPFTAEEILMLKDIEK
LIIPMTYGFFGIIESVVPLLQTLQGKTLNKILMESIKQRLSVYEQRTVCRMATLLDPRFKKSGFQHSSNAEQAATCFENE
LANFPVKETASNQPVAPDSSLQDTLFDFLGERSMNKFVNSRVDAILTKRQYLERAIVGQDSGPSTIDGAIDSAQLKVPSY
KLHIIEYITFFQVNQTDFPAIGSLFAKYLCIPATSVESERTFSKAGQIISERRTRLKEKNVNILLFLNRNSWLK
>hAT-1_PTri#DNA/hAT-Ac 284-2468 via genewise with hAT-15_SBi_tp, 3 introns (345:423, 1462:1533, 1629:1795) [Puccinia triticina]
MQVTKKRRHTSNVWEHFNVEGLGDHTQAICRYCTTDLSARTSLGTSHLQRHLLNCKQSPLFQGNSESSKTKWKFSQEISF
ELLAKMIILHEYPFRLVERNFFVKFVCSLNPEFKMLSRHTVHNDCLKIYNQIKQSIVEELSSIQQVGLTTDLWTSRDQTG
YMVVTAHFVNDEWELKKRIIGFKPLASPHAGAAIADRMHKTMLEWNLLEKCSFVTLDNASTNDAAVQRLQKIISDQFPGG
LDAQGAYFHVRCVGHVINLVVKDGLQSVHQGLLKLCPLVKYIRSSPARKQAFEEAVDLCGIIVTRRPTLDVATRWNSTFF
MIDSALPFKLAFERLSVTESSYNSYPTPAEWVKLMHMQDFLEIFHKGKLYFKQYHYEQIVTFLVFFFSAKATVDLSGTQY
PTSNLIFKIMTKLNKCIIKAQNVLNTPNVLHTPNNHHSQSMHQKFNKYWKPLQTFASLAISFDPRYKLDFLWFYFSNNLG
xGEDASKVQLICIRELLTKYFSSYAPKPESILPRENVSANSQNLLNNDEDDKFLQFFATTKGTPNPTSLTSELNLYLKQP
NVVVTKGQHFHILEWWKVHQSELPHLSELAKTVLTAPMTSVALESAFSTGGHILDEYRSQLHITMVEALICAQDWLRHKS
NTANIVDILSEED
>hAT-2_DSe_tp#DNA/hAT-Ac 661-2231 via tfasty with Hopper_Bd_tp, 1 frameshift and 3 stopcodons. [Drosophila sechellia]
KKTDLDKAVMRMIALDVQPFSFFVEDRGFCDLIRKLYPRYKVPSxSHLRNVDLPREYVGLKLKLEEDLSYVDNVSITTIT
ITLTIITIVGPRVLMRRISLHFINECYGLKSAVLSTHKLVDATNHCASNIANSLSAVLNECNLFNKVVTIVTDNDASMKE
KCELMKMKHLPCVSHTFNLLVQDLLKIDSIVPLLAKCKRIVSLFKSSSIATKKLKNAQTSKSRYGLIQEVPTRWNSAYYM
IQRIILVNDSLSALLLNSTKDPRPLSADEMFVLVEICQVLAQFHEATVQISTNKTLSISVIIPLIYELHQKSCKVYSQVI
SHPALDICEAVKKRLPERFSHYETRTVTRIATLLDPRFKKDGFLFTSNSEKAAKALQLELFSSLSRVLSTPDISTPPNTP
QEKRNSFFTFLETKISNKVHSNIRMLLRTYFEGPNEPEDKDPLAYWMVRISFLLFKLNIHDFIPFQANSESLKPITKLFx
KYLCIPASSTESERTFSKPGRIVSDRxASLKPKVVDVLLFVNKN
>HAT-2_BF_tp#DNA/hAT-Ac 1238-3139 [Branchiostoma floridae]
MNMLRFSYFNGLIKYFLLLGSAQPLPPCATQSPPAASHTATRPTTASSSAGTAEKPALPSLDSLLEDSSAPSTSSSATVA
SGPSSNVTPFSLAKLNKLPAEKQHKITGRLCHYIVKSLRPFSVVDDPYFRAVVNELNKNYQMPNRGEVSERFIPKMYESA
LLNLKSELAHVDFAALTGDGWTSRVADHYMTLTIHYLHNWELKAKVLQTLKTEVSQTGENIAVEIKSCLEDFGLMGKIEV
MTTDNAPAMINATSAAGIALSMGCFAHTLNLSTQKAMDVPTVVTMLSVIRPIVTYFRNSSIGKIVLKDKQALLAKPGHNL
LQDCKTRWNSSYLMVERFVEQYPALVAATLDDRLKKKDTFRKLQRCTEKDLDRMEQFLEVLKLPYKVTVAMSSEKRATSG
QVLPMIQKLQTNLAEKKEDEKFTKDLKAAIRNDLAKRYQHEGRREFLQEATALDPRFKDASVVTEDVWERITNKIEVIQA
QVQVKKEAEDEGDMPQPQQIKQKSRDGLSDTDTDTPLAKKAKLTAMEEIFKDEDEVVVTHVEPPLPVRLRIQQEILKYKV
MPKLKSTDDAVAFWRGKTDELPLLSTTARKYLVVPGTSVPSERIFSTAGDIVSAERATLDPENVNMLLFLNKNT
>HAT1_CI_tp#DNA/hAT-Ac 617-2409 wised with HAT5_CI [Ciona intestinalis]
MQSSRHKSKVWEYFSVEKGAVNCLLCKLNLSQGSTDTKKKNTTNLWSHLRVNHQKEYQESQKQILIEHKGQPTLEESFNQ
VRRWSNIDPRSKELDRIILEMMATDNRPFALVTAPGFQRLMAKAEPRYQLKSEKYYRTDMLDQVYCLVEKKIRELLCVEN
AGHFLSFTSDCWTGSTESLMSLTVHFIDTEWNRRQAILNAKAMMGSHTGQYVSEIFKTMLQHWQINENRVFLVLRDSGSN
MIKGMKLIDMPSLSCFAHTLQLVIEDGIKTQRTVINILARLRKIATHFNHSVLAKQKLQDIQEQISVPKHTILQSVATRW
NSSLDMLXRMLEQRRALTVYESDNGTISCPSSDEWKLIENLIDTLSXPFKTITLEMSKSNACLSIILPNICALRLLLKNV
GPKSRGIQTMRGEMLTSLEKRFLTIEQNKEVVMACMLDPRFKTKVMSPLSSQQGKEWILEEINNQNSSSPQPKKICLQAQ
SSSAAAHEPQRSCLDAVFESLLGSSSIESGPTHELAQYLGEPVQKKNTDPHLWWKNNSCRFPSLEATARKYLSAPPTSIP
SERLFSEIGNIYXSSLTGINAEKLSFLHDNLRLLNWNY
>48139970_Ame#DNA/hAT-Ac gi|48139970|ref|XP_397065.1| similar to ENSANGP00000015075 [Apis mellifera]
MSKIRVKRSAIWRHFSINYQEDGSHAIVKCNKCNLTVPYCKNTTNLWSHIRIRHKDILESELSNQPNRKRNENHASKSRQ
RSSTSSKISSDVSENYFDTRRDKEITRCLVQIVAENVIQFSAVNGKGFANFVRALNEKYKVPDVNTLISEHVPESYERKR
VETKEILSRSTNVHLAASLCTDCKRGTSFLVTIAHFCANQAQHRKLLRISRLERTNGTTIRENLLRVVDAWGIASKVRTV
VYNGKSDIANTNETEWRQVYCFGRALNLIARNAITDTEIINELVNKCRGIAHLFRFDNSKLSRRRHQLGENSFQDQATLD
RRWTTVYSLLNGINESRSIVSSKNVVASLTEQEWRMIGEMIRILKPLHEATRELLADCTVTISKVIPIVHGVEAALKNMD
NLSRDATLFRDNLLILFRKRFENIERNPVYAIATFLDPRYKDIAFQSKECVKLEKHLLIKELNYCLSYTSFVPWEFGSEA
KESVFGALCIISKDIKMKIDSVWGWASPPLRLQLGGSRGASGRVAAGAPSSQRMGEMVVERAPSPARLSHTSEKHPRATL
TELNVLRRHRELCDVVLNVGSRKIFAHRVILSACSPYFRAMFTGELAESRQTEVTIRDIDEMAMELLIDFCYTSHIIVEE
ANVQTLLPAACLLQLAEIQDICCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFLLLPVGQLV
DIISSDELNVRTEEQVFSAVMNWVKYNVTERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDDACRDLVDEAKNYLL
LPQERPLMQGPRTRPRKPTRRGEVLFAVGGWCSGDAIASVERFDPNTADWKMVAPMSKRRCGVGVAVLNDLLYAVGGHDG
QSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKENKWSKVSPMTTRRLGVAV
AVLGGYLYAIGGSDGQSPLNTVERYDPRQNKWSQVSPMSTRRKHLGCAVFNNLIYAVGGRDDCMELSSAERYNPHTNSWS
PIVAMTSRRSGVGLAVVNGLLYAVGGFDGTAYLKTIEVYDSEQNQWKLCGCMNYRRLGGGVGVMRAPQTENYIW
>47226801_Tni#DNA/hAT-Ac gi|47226801|emb|CAG06643.1| unnamed protein product;  KIAA0785 homologue [Tetraodon nigroviridis]
MEGKGSGPSCSGPNLVAHPRAKSKVWKYFGFDTDADGCILHWKRIYCRICMNQIAYSGNTSNLSYHLEKNHPIEFGEFVK
SNADQMREVFATVFPRTKTEPSVSHVQHLNQETTPRQSLDYETRRHGDLTAAVVTFLCEGLYPVSLVEEPAFKTLMSTVD
PGYSPPCKSDLLAKMLPQMYSRTRDRVLGEVAGVLYCGITTDLWQSQMQNRTYISLYLHALNCTNTSGFSVINRCLETFE
VQEENAAENITRAMYEAFVQWGITHKVSGATTNGSVDIVKACSLLELSDRSKVESDVIEEAKAILERQIAERPSLEDFAS
VSDEPPIKKQTPLRDASVGQENPLAAIFCQSGSNQSQEELHAQVVEELSNYKSQRVLGLNEDPLLWWSSHAHLFPTLPKV
LQKYWCIPAMSVPCHRLFSSSGAALCGKRNRIAPALVHQQVFVYENSRSYYEPEL
>ATHAT3_tp#DNA/hAT-Ac 1172-3376 [Arabidopsis]
PIIVYIFFLLQMDSSANPNNTESNTKGNEDEGRTRPIDNSKGKRKSDVADDGDSANPCKPKKKLQTRSWVWDHFTRKDGD
DDQCKCHYYKRFFGCSTKSGTSNLKKHLDCCKHYSAWKGRQSQNVINQEGNLQSGKVSKEVFREATNEMLVLGQLPLSFV
ESVAWKHICSKANLYKPHSRRTATRDIILMNVARKASLKDLVSANKRRVSLTTDIWTAQATGASYMVITVHFIDEYWRLR
KFIIGFKYIADHKGATISRVLLECLTEWGIERIFTITVDNATANTSALRKFQRALQSQRADSLVLNGDFMHMRCCAHIIN
LIVKEGLHKLGNHVEAIRNGVLYVRSSTSRCDSFEQKVVTGKMTRGSLPLDVKTRWNSTYLMLTRAIKFKVAFDKMEAED
KLYNDHFLEVVDGEKRIGPPTTIDWREVERLVKFLGLFYTATLVVSASSIVCSYKCYGEIVTIEKNLLGMTHSYDKELRE
KAVEMREKFDKYWDGQKNINRMLIIASVFDPRQKMEFAKMCFEKLYGVDTSEAKEMYNSVYDVMKAMLKEYTVIFKGPNT
QSSQSNPPSSTAARDTFACELAEDSNVEFERMDRSYKEMVNEIRVTDPKDELDIYLKAEVENPKTLPGMEWDVLSWWRLN
SQKYPVLSEIARDVLAMQVSSVASESAFSTSGRLLEPSRSCLTHYMVETLVCLEQWLKSEIKLSENTFLTNAQLLADIEL
LDKLEKGNFIYVVY
>CHAPKA1_EM_tp#DNA/hAT-Ac 286-2379 [Entamoeba moshkovskii]
MEESLSTISFVEEEEDILKQISERRKNIPKNSVVWCVFDLEENTKTLDGIKTKIWRIDEIFYEEKPTQTKRMFRKSFVEA
LNRSDSSFKLKCKLCYYEHCYYKSSKSSSAVLKHIEMCHPEIIDEHQRNHRRPYASITGSIDPFNTKANVLLVSFIILNG
LPYSLVDSPMFNNFIGHINERYVVPKRNSVSDKLIPAMVKMAKQFILNQMGNCQSICCTIDGWTTKFQQIPFFSFTAHYY
CDNKLVSRVLKLSPXFERKTKDNISTFIXXSIKEWQLEKYNSFPIICDNANDVMSGVQESGMIKIGCCCHRMNLVMNNVL
DSCLIFNNLVKKCXSIESKFKNSSSLNSILNEIENNYFGSTLNTLVQVETRWFSNLTMLKRIFEIHNVLEGIIQAVSENY
PSNVRNLFLDSYLLTKNELILIEFFIGHSSKLNSICNDFSSQEIGTLSIVIPTIKNVVAELKFEKEQILATESSVISISN
YSIVTNEGNITVNNFKDIEECIDSVLTIESNESNYDIKEIKKNFIDQLIISIEEKFENRNNIFKNETFLIATTLNPRFKI
DFFNDEELSQVKDIINRMIGDNSPHHEIHELGRVRRASSINEFDRYVAEECIKSNDFNDVINYWERSKTIFPNLYPLAMK
HVSYLCSSTASERLFSNASNNFINKRTGLLCYHLEELCILKSFIENDGITLFENLSI
>ATHAT9#DNA/hAT-Ac [Arabidopsis thaliana]
MDQQSLERIALLEAENERTEMEMNAEVETQGQNQTESVTQPCQRAKRLRKKQRALCWDEFTSVGIEEDGKERARCHHCGI
KLVVEKSYGTSTMNRHLTLCPERPQPETRPKYDHKVDREMTSEIIIYHDMPFRYVEYEKVRARDKFLNPDCKPICRQTAA
LDVFKRFEIEKAKLIDVFAKHNGQVCLTADLWSSRSTVTGYICVTSHYIDESWRLNNKILAFCDLKPPHNGEEIAKKVYD
CLKEWGLEKKILTITLDNASANTSMQTILKHRLQSGNGLLCGGNFLHVRCCAHILNLIVQAGLELASGLLENITESVKFV
KASESRKDSFATCLECVGIKSGAGLSLDVSTRWNSTYEMLARALKFRKAFAILNLYERGYCSLPTEEECDRGEKICDLLK
PFNTITTYFSGVKYPTANIYFIQVWKIELLLMKYANCDDVDVREMAKKMQKKFAKYWNEYSVILAMGAALDPRLKLQILR
SAYNKVDPVTAEGKVDIVRNNLILLYEEYKTKSASSSNSSTTLTPHELLNESPLEADVNDVSIIIYLNIFH
>HAT-7_Mad#DNA/hAT-Ac 1688-4021  [Malus x domestica]
MFFFRILFQSRYEESSKHSGIGYSSTGDSPEKPEDEAIEIDSENEIDVEGDPENDGEESEGEDEKVSNSDSRKRSWVWDH
FTTYYVTKKQSKINEKGEKYLAEVKLRRAKCNYCPKQSSVGDYAAEPRVNGTTSMRHHIERYCKFYQGNRSKKQKVLVGD
KSKGNNLVAVGFSQESVLEACVKMVVIDEMPFSTVDKMGFRLFCAVGIPLFKVPSRRTLVRTFLNMCDESKAYLKKTLSA
HRICLTTDTWTSTQNTNYMVLTAHFIDHEWNMHKRIINFCVIPNHYGTTIAKLIESCLLEWGIDKVMTITVDNASANKVA
LDQLMTKMNRWENSQAILGGKYLHVRCIAHITNIIVSHGMKRLNNGLLAIRNCVRFVRSSPQRLELFRQAVNRVKLTCKA
TVCLDCPTRWNSTFVMLDVALKFKKAFATMAEDEASPFLAYFKEVEDEKDEDGVIIVCQTKGRKRVGPPTEEDWSKAEVF
VKFLRVFYDVTLRVSASTHPTVHTGLHDVIKVETAINNLESRANMQVGLPSEQLLKAMASDMRSKYEKYFDSYHELNPLI
VIGLVLDPRFKLRHVTQLFRKKLSDIEAQLKTEEIKNILRALYDEYAPNVEGGKYMKKSESLQSQPSSTSSNVATTEDDL
IDEWMHFVEDSDEKVVGDEVDSYLFDPLVQITKEESTKYFNILLWWKVNGNKYPILAAIAKDILAIQVSTVASESAFSTG
GRVISDFRSSLTPKSVEALICMQNWLRGDNIITLEDDAPSIDHIEFYESIESGKYII
>47207164_Tni#DNA/hAT-Charlie gi|47207164|emb|CAF91387.1| unnamed protein product [Tetraodon nigroviridis]
MARFPESNISVQTKRYASDIKSLAEEFTRRFRDFAAIEKDIALFSSPFSVDTDNVPAHLQLELIELQCDAESRSRHQQLS
LANFYRQLDKGRFREIREFAKKMLSLFGSTYLCEKTFSVMNLNKSRVRTRLTDSHLRDILRINTSAFEPDLAFVLQSRSQ
YHPSH
>HAT-28_SM#DNA/hAT-Blackjack 334-2221 via tfasty with 117935429_tp, 1 frameshift. [Schmidtea mediterranea]
MLKQKRSCKFLDKYAEEYPFMKKGRTETEGYCSHCKSYLSISHGGISDIKAHVMTTKHVCAVNSSASCGKITSFFVKPNT
TEADQVIAAELSFSYHIIKHHQSFVSASCTNKLFPKIFSDSKISKKYASGATKSTCMITKVLAPHSVSVAVNEINSSFFY
SLSTDASNHLSEKIFPLVVQYFTLSGTKVKLLKLGNLKGETADLVANFCIQSLKDLNLEMKNCVAFSGDNANVNFGGRMR
AGTNNIYTKLKGAIGGQIEGIGCPAHVVYNTLETACDQLSCDAGMIVFKLFNYFSIYMVRTERLKDFCAFVSVEFKKLLS
YTKTRWLSLLPSIERVLKIFDGLKSYFLSEDKAPKVLLDFFNNPLSEAYFWFIHSQASSVSFLILKIEGKNQSVVEALLV
LKATVSIFEEKLIQCFIPTSVLSLLKKLLDSGIITDQDIEKFKKEVICFYETFCDYLKKWVKPLEHFEIFSWMLLKEKPE
WKDVELVLDYFKEKEIEINDTLLFNQIQIVRAIVDSESKENLDWKFKIASEKWVCVLQKMDKNFPEQYIDLLKICEYVFA
IPAHNANVERIFSLMGIQWTDERNSLSSSTVEAILQCITNFDLNCSEMYDYILCKKELLKAAKSSNKYL
>Charlie2a_tp#DNA/hAT-Charlie 1455-2246 [Eutheria]
YSLKCILTHLFELKNEVRLFLTESKSDLADWFDNEDWLCQLGYMADIFHKLNELNLQLQGFDENIFKARNKIKAFYQKIL
YWQRCIEINNISIFPTLSEYIGLNKVPLSERVTGIINSHLISLGKAFLVYFPEIEKVNDSNDWVTNPFASQVVSNSLLST
KLKEDLIELSADRSLKIIFDDRSLCDFWHITRKEFKELSDIAITKLLPFPSTYLCEQGFSALTSIKMKNRNRIDAEPCLI
LAISNIHPRIHELIGKXKPHPSH
>Charlie24_tp#DNA/hAT-Charlie 346-2151  [Theria mammalia]
MSKKRKYNEAYVSFGFTFITERDGTQKPRCFLCGKVLANGSMKPTKLKEHLISVHPENTSDSVDLFHEKKAQFEKAGTLP
KLGFAPTQKPCLEASYKVAYRIAKQKKPHTIGETLVKPCALEMVELVCGLEQRKKIEAVPLSNDVIHSRIADISSNILKQ
VMEELAAMPFPFSMQLDETTDVSQCSQLLVFVRYVHADAIKEEFLFCEPLLETXKAVDIFEMVKSFFAKQNFDWKKNLGT
LCTDGAPAMLGNTSGFAALVKKEAPHVIVTHCFLHRHALASKTLPTILKEVLSTAVKVVNFIRARALNHRLFKRFCQEMG
AEYEVLLYYTEVRWLSRGQVLKRLIELRAEVSLFLREKESPLSEQFDREEFIHGLAYLADIFGHMNEVNLSIQGPAVTIM
DAAEKLRALLAKLPLWKRRLEADNYANFPMLEEVLLQAGVESDKALSISLQAEICRHLETLQNSFEGYFCSDDLKIETWI
RNPFLADIDSINDADLAKDDLIDLRTKEMMRHEFNSKSLGEFWCSLTQAYPHLAKRAMGALIPFATTYLCESGFSALVAI
KTKSQNRLDVKDDMHVAMSKTTPQFQTSFKPNNSSLLIEIYF
>Charlie6_tp#DNA/hAT-Charlie 637-2556 [Eutheria]
MSDGPMWRFLKTRCEMEEEDSRPRPTDNSDKVSDEELQSSESFHCTSATRDTKKVRLYNESYLSMGFTWAGNPSCPIPLC
VVCGKQLTNAAMAPAKLKRHLTTNHSHLTSKGADYFKRLLESQNKQSKAFVXKVTFSEKAQEASYLVAELIAQKRKSHTV
GENLIMPACKIIVSKMLGQDAVREIEKVPLSNSTISRRIDDMSHDAEEVLCNKLKNNSFSIQVDESTDFTNKCHAVAFVR
FVNDGEIQENFFCCKELPETSKGQDIFNVLSSYLETKGLSWRNCVGICTDGAPSMVGSMRGFASLVKKENPDVVTTHCFL
HREVLVSKTLGDEMKKVLDDATKMVNFIKQRPVHSRMFKKLCENLDKEHINLLLHTEIRWLSRGRVLNRVFELKGELQEY
FQENSRPDFAECFEDEEWLQKLAYLADIFHHMNQLNKSLQGPGENVLTSSDKILGFKRKLNLWKNHVAKGNLEMFPLLLG
LESEEGYQQVSSLIENHLEELQNKTEQYFPSLSTQVYDWVRDPFSESSAQPENLTLREEEELCELQSDRTLKMRFTDLPL
DKFWISVKEEYPAIHRKAMNILLQFSTSYMCEQAFSCLTSIKSKDRNRLISVENEIRVCLSQVRPRIEYLCSKKQAQVSH
>HAT6-2_NV_tp#DNA/hAT-Blackjack 2136-8739 8 introns. Genscan, tfasty and trickery. One stopcodon. There seems to be a cystein protease ORF at 1622-2065 as well. [Nematostella vectensis]
MVASLMWTHTKNVNLTGWAPNHFVPLLPPSPEPVPTPKAPASRPGTKRPASPSTPPKMPSKTAMYRGSLKYQSSFSSKWT
QQWPCIVSVQGEPTKFRCTICGNREISCAKQGAKDVRENLNTTMHKNNNEQMKKQSTLFQTCAAESNKIDKVTSAEVQVV
MALVKHNIALAAADTFSSLFPKIFPDSEIAKCYRAGRTKSTCILNNxPHFRSALVEGMKSSADDGSNDNGTQKMNPLTVR
IYDSQLQRVKTSFLDICMTSGGTAEDIFASIDGCLTSLDIPWQNCVAFGVDNASVNVGKRNSIMTRGQSKNDVVYFSGCQ
CHVVHSTAMEASTALTEATGFDVQDLMVDVFYWFDQSTKRKAKLVEYAQFCDQEYRKILKYGSTRWLSMEKVVTLLLKQY
HTLRSYFLSEGESAPRFKRLEVAFRNPMTEVYLLFYQAALQIFLNLNLFLQRDDPLIGAINSSLKRFLQQLAMKFIPRKT
VHQAASMEELLDAPKHLPDSNVDVGLITKTSSNKLVAAGDVSPDAASTCYKGAQLFYASAFQYALKRMPFKKDLLVNAGF
VHFEERETIDADMPVFFVQRFVTVLISNSMLFIVHCSRMRPHWFLSINLFCLHTFIGIRTFSLLGQPSNCRPSLMSDGDL
PSAVRQASLVDGGRLRPDAVWGYLNGLVSPDGQPRFPRLSKVAQLVLTIPHSNAAEERVFSMIKKNMTPYRFCLDNEGTL
SSIMTVKLEQSNQPDGIKLPPELLKSAKAATLVYNRDHR
>HAT-8C_Mad#DNA/hAT-Ac 1623-3926  [Malus x domestica]
MDGSGSGSGSQSQSTSTPRISVLVKRKPQYIRTQEYYEDYCDDDPDMDADIGLEEIDEEIEEEEGEEDSVELDRRQMPSV
ATLASRVGQRKKSNRTKGPSPAWNDATKVXVTDEFGITTVMAECNHCKMQVPAESSRHGTKGILNHLKKCPDSSLYEAPD
SKQPLLSQGVMGGQVVAHTFNQKRLDMKCVKWIIKAEMPFRAVDQEDFRDWIHDLNPKYKLPNRHKVAAAVLELYFTEKE
KIKRVVDGLRVSITTDTWTSIQNINYMVVTAHFLDNDWALHKRILNFVQITSHKGDDIGRCLEVCLNNWGIDKVFSITVD
NASANDTAIAYMKRRLKSNGTLLLDGAHLHMRCACHILNLIVKDGMTELSREIEGIRNCVKFIHSSPARLETFREYCVLM
RFDRMSNIPFDVVTRWNATYEMLNSAFKFKQVFSRMADECNTFISYFQEEVSKEINGVTTKVKRVGPPVVEDWERAVSFA
HFLKKFYDATLTLSATLTPTSNLILGTVMALQVEIEEKICXSSNATLQSVATSMKLKFDKYWGDIEKVNPILFIAQALDP
RYKFEMLEASLEELRYSCDAILDVKTTIKKNLTDLFKAYKEGEVSSSSSSVTVDQRPSVVVDDSSGLEDDDVATRMQRKI
QQKRAAAQQNEISNEVDMYFNDPHQSLTYEGFNILDWWKVNSGIYPTLSRVAKDIFALPSSTVASENAFSLGGRVVDPFR
ASLTPRTVEALVCTSDWLRGNEMSFYKEPTIDDLMFYKELEELEKGK
>HAT-8_Mad_tp#DNA/hAT-Ac 1357-3700 via tfasty with HAT-8C_Mad, 1 frameshift. [Malus x domestica]
MDGSSSQSSTHMVSVLGKRKQTQPSGTLQLGTPSPQDYLHNDYYVDSWDDDPDTEEDIALEQIEEEGEEGGKREEEGEEE
EEEVEVVRQWEGPPPKKGNRRKGPSPAWNDAKRVTITDNNGEKSFMAECKHCKLLVPAHPITHGTTGILKHLRKCPGSSL
FENVDPNQPTLTQARMGGPVVTHTFNKKRLDRRCVRWIIIAEMPFRVVDQEDFRDFIRDLNPKYKLPNRHKVAAAVLELY
VEEKAKIKSVIEGLRVSITTDTWTSIQMINYMVITAHFLDTNWGLHKRILNFVQVTSHKGDDIGRCLEVCLNDWGIDKVF
SITVDNASANDTAIAYMKRRLKSNGTLLLDGAHLHMRCACHILNLIVKDGMTELSCEIDAIRNCVKFIHSSPARLESFRE
YCVLLRFDRMSSIPFDVVTRWNATYEMLNSAFKFKEVFSKMAFECDSFIAYFKEEVSKEVDGVTTKAKRVGPPEVDDWER
SVSFAHFLKKFYDATLTLSATLTPTSHLILSTVIALQVEIEEQILNASNATLQSVATSMKLKFDKYWGDIEKVNPILFVA
QALDPRYKFDMLETNLEELGYGWDKIREEKVRVKGYVTELYNAYKEGVVLSSSSSSSTSSSATSNVEQRSSVVLDDVGGV
MVDIDVASRMAKKIQRKRAEAQQNEIANEVDMYFNDPHQSLTYEGFNLLDWWKGNCGQYPTLSKVAKDVLALPSSTVASE
NAFSLGGRVVDPFRASLTPKTVEALVCTSDWLRGKEFCFYKEPTLDEFRFYEELERLERSK
>SLIDE_tp#DNA/hAT-Ac 915-2682 wised from "gi|1617412|emb|X97569.1|NTCIITE N.tabacum DNA for class II transposable element slide-124 with ATHAT10" and others [Nicotiana tabacum]
MNALYPNETILENNEENEDDDETQTPDLDDTPTSPLNNPSDAPVDPPVETPTFNREPAKRLETSLVWNFFTQVRRKNKAK
CKTCGKLMSHKYVGDRSGTGSLTRHIKTHPRDKxxxKRHLEGTSVDSAINPSTGSNLVQPGINTVTGGILYYDPNRDREE
LAKMITVMCLPYTFASNPNWVHYIRRVFNPTYKGWPRATVKSDIYKFKHEYEQYLRYLFTHIPNRISITTDIGRSGNDCD
YLTVTSHWIDEEWIMQNRIIAYRIINSRHTGKFIANTVADICNKxAFPGQYYPTISNCLVYIAALSDLFVEFSEGGDIYE
LAINEMKQKFKKYFFPIPPIYGLAAMLNPTMKLGGPHFWYSNIYKALDLSNEEIATLADAKASIKINAQTVYNAYQLALE
HARPTIPTPTSSSSQSSKRVAGLKALKSWTEFRGSQGENYDETSHLNELQVYLSQGLEKENPDGSFDLLEWWKAREKHFP
VLARMARDILSIQASTVASESAFSQARLQIGDHRASMRDSLEKSVLFRDWIRSERRNFGIAEAQPAIDEAYEEMIAELTE
DSLRPEVVMNKLLFHHHQRNLLRTLKDL
>HAT6-1_SP#DNA/hAT-Blackjack 424-2865 [Strongylocentrotus purpuratus]
MAEKQQKKTKKWSQKYKAEYSLQFPCIRKSDRGIHHAFCTICSVDISVEHGGRDDIRKHVGIKRHTDIAKARSSGKSTLM
TYFTKQGTSEEEDVTRAELFFTGFIVEHNLPIAVADHAGPLFRKMFPDSKVASKYGCARTKTSAIIGELSNVTASAIADI
ARSFPFSLATDGSNDGGDSQLYPVLIMYYDDSAGVVKQGLLSLPACKQDSTGVNIYKLLHSELNDRKIPWGNCVSFCADN
ASVMLGKHKGVAAYIHKENPECYIMGCPCHMIHNTAKKAAQALPVALDDFLVDIYYYLDKSSKRIKGVKALQELCDAPTH
KILKHGATRWLSLGQCLDRLIEQWEPLRLFFKKEVQRKMKPVKAITLRKKNAVVVSTGTAGSKATISSRGAGVPATLKLA
SASKQTTGTASKSMVRAGSSTCPSSSSTGKGGPKLSSAFAKSVDKSSAKPSSQKPTPSLAAPTSSHLKRKGAPTSSAASK
HKCNQPAASSASSSHTLQESREKRANRMFLSPQTKLYCFFLRYANRLFEKGNLLLQREEPCIHLLHRELNGLLKDIFIRF
LKPSSVSSVALLEVPYSDRNHQKNDEELMIGKDAKLYIREQRSLEKSTFTLSESDIQGFFSAVRSYYVKACAYIFKTWPL
DDELAKHAQVLDLKQHQEVGFDSVEFFVKKFPCLLGDGDVDSLESEFAHYQADTSIASIATETVRVDEQWHRISQLPDPC
TGAKMYPTLTKVMKGILVIPHSNASCERAFSIVRKNHTEFRPNLSVKTLEALLIEKLAHNTPCFNREYSKEIINRAKKAT
KLSLKAACTSASK
>ZhAT3_ZM#DNA/hAT-Ac 1048-3183 [Zea mays]
MDGNSNRIDNNNSQSFSVADPLTLSSTGREIALDADTGTGTAATPSTATTTASTTSTDTICHKRGRKSTSDVWNDFEQLF
KDINGKKVRYAAKCLYCKSQLTASSTAGTGHLKRHRSTCASKAQRAAKTQSLIQFNADGSVRSWDYNPDIARTELCRLIC
TLDLPLGIGSTAAFERYIKHAHNPRFTVVCRQTTTRDFVKFYNQSRTSLIDVLKSSVSCVALTSDIWSGNAKEDYISVVA
HYVNADWVLEKRVIGMRLIDVSHNGANIADRVKTVIAHFGLTDKVFSITLDNASANTNAMNILSPQFSGYVGSLFLHQRC
ACHIINLIVKSRLKRLKPYVEDFRTAVSFLNSSNQRIASYKSYCIAMGVRPRKFGLDMDVRWNSTYLMLKHLIPYKSTFS
VFIQTHYQQHMTQPLLTETHWEVGEKILTFLELFYDCTVALSGVYYPTSPMMLHHIIEIAEHLNNFENDIMLRDTVVPMK
SKFLKYWKSIPILYSFAFVLDPRAKIRGFSNALQVLSRYVTTDYSEYFNVIRSELTNMFSKYEIKFGAAKLRRPTHTTST
SRKKTAWGKIYASPEVSEVSDAVSSSSFGSQVSELAMYLDSDPITVFDDGFDILSWWHEHKSNYPILSLLAKDVLTVPVS
TISSESVFSLAGRLIEERRRSLTSEMVEILTCLKDWQLGESREQHNIANNDMEEHYKNMYLDEEREAGVGRS
>CryptonS-1_PS_yr#DNA/Crypton 365-2509  [Phytophthora sojae]
MSLSALIPANTQKARTTGIGAFERMLEAENVSMNVIQACVRGDSSGKSLAAIMDRFGYYLATYEGKKGKLASNTAISYFR
NVKLWFFDEHPHLRVPTELNLLKQGKTLEKHCLKRDNGGFTNKAPPCTKADLRSLIRYVYSTASVATDYEDAALACLMWH
CFGRSSDLGYISKQHITVSADNVFYVRMLRVKTAEEQGLTLVPDRDDFLTCPLHTLAVALVMQEAPCVSLLSQLPALATT
AGTSLDAGAPLLEVLRVSVADSSDTAAALEASLSPPSTASLLPTPSPPSSNPSQATTASLPAQLTASSPARSSLGRGEDG
VQAYVNRFLKRVAEPAGATSNLTSHSFRRGGAQHANGDERLAAQWIFDRGSWDMTRTNKGFAYVFNTPREDRKVARVLSG
WSADEAPVIADVAALDHGTQERLARLEELLFGSCIGLADAKLNVSRKVIGVLTAYLIKYFPQVKALAPDTLFVARIEECL
GAADIPVADMLSWSMAINTSAASSPEQAHEKSEAKSNCCHAGCHHLAVISELIESNRLMSARLLALETIILKQAPPVKRI
EEASEEQASSEQAPPAKRRKKAATNLSSLWFEWYTRLPRVWDSSDRQKKSDYRLGVAYMKLFLDGGFVLREDAVDFKDLV
FEVGKRAEAAVLRFLSEQGSRAKGAGSVLREMRKLHRSGALDSRIVAYQSHLALERIVDPAPAATQNILQVVGHV
>CryptonF-3_PS_pt#DNA/Crypton 3625-5820 R [Phytophthora sojae]
MRCHRGFWAYAGEAGAEISDSAARFARKQAAQDAPGVNKAAQDWLRTRAGRALRSLWLAEEPPRRQTYILNNADDTFPLE
DYPKGIVDGRKDRRRYPRMVRADVSTPEVVHEASAAVQAGNSSNDQDSTVDKALDTYRGELVRAALAAEVTALARAIRGG
AIEDVVSRAAAIVECMGAQIASELSPSARQRVVGISSDVAAYVRAATTQMKMYTDAEVSAAIADSVTRVRSADQALCSYV
RNAMHSDPKLKTTYQEREKYRAVSTVHLNHCYWLATVPTSASVECSACSQDDVPTCGEATAIEATPHTGDFARKRLRVIE
HEQDLDTAVGQVRIVNKLSGARGTRLVSGVIGDAASEVGTRISGEANVHMASAEEERSSGDVDNECHNEASASDEVNNEN
HDDASASGNGSNEHVDENSSDREDVGSDSVHDEDDSDDANGKSAHYEEGFEGDKYQSSESESSVCSDGSVYEETSAKGPA
SAPSVPNRRVLRQRKSHDDALFVWVDCQGSGDAKSFRFYREDLDSLLPLSFMTSMAIDYFIYRDMVKQDGLVCCYGTTLY
LSMEVARYTLKPQKKRRLLKNLIEQFDWKRYRYMLVPVSGRKHWSLLVIENPLHSVPPKVYHINSLRRAHSSAYAFDVTK
WFLSNLHEKEFDAFEWKTFVFNTKPQQSNSVDCGLYLLHYMDVISKHVAAAEPQSIEDKLGEWISTDFNATKAASYRSKL
HSRVARGPQQGK
>CryptonS-8_PI_yr#DNA/Crypton 277-2310  [Phytophthora infestans]
MSLSDLAPTNTKRARDGAARMFKAFLEEEGVTWEYLEVCMKRDNAPRVLEAVVDKFGMHLAFKEGRKGSLLARHSVMQYY
RQAKNWLLDQFPQHREAVGKVLLKKGQVLERYCMKRESGNFVKKAPACTKKALKQMMVYLYSNGVTASDYQDAALLCLLW
FLFGRASDISLLRKVNLSIGSGGIFFLRLIRVKTSEEQGLSLFPDDDFATCPLLAIAVALATQSAPAAALLNHLPEQQVA
TEASLTPAAPLIDLIDNPEAVAPLNSTTDENKPLDDTTGIHGYVNRVLTRIMPEAGVVQRLTSHSFRRGGAQHANSVGMC
VQWIFDRGAWNMTATNKAFAYVFNTPAEDHKVARVLSNRGPDDSVALLSLDVFDSHTRQSIRLVSSALFTSSSGMESEQY
NVNAAVHDTLMAYLLRHYPSLKTLSTSGLVIQRLEACAEDKGFTVNHLLAWSAYLSSNPSTAEDSKSKFAQDNPDDITQH
PVYFQQTALIEQLIQVNKKLDARLTVMEDIIGNKHPRAPTKPEESEDSSEKKSPGKRRRTSPALSLKDVWFAWYTQEPRM
WSLTDAETKHTRSTGKQVVAFLKLFLYDGFVLDKHSARYRDDVLETGSLAEKAMLAFLQQHNVTARGAQNVLKSMRKLHK
AGQLNEHIGKYLQRQAQGLIMDPAPPHTCNTIGLVTMK
>CryptonS-13_PI_yr#DNA/Crypton 346-2469  [Phytophthora infestans]
MSLASFVPANTQKARTTAVSAFKRMLEEEMVSLEYVQASIASDTTGKRFASIMDRFGFYLATNEGKKGKLARNTAVSYYR
NVKLWLFDLYPHLRVPTELQLLKQSKTLDKHCLKREKGGIVNKAPPCTKEDLHALTQYVYSNARVKADYQDAALACLMWH
CFGRSSDLGYIKKQHVSVSADGVFYVRLLRVKTAEEQGLTLVPDKTDFLTCPIHALAVALATQDAPCGSLLSQLPDLVPV
EATANAPGLPLAELLEADPASLRVALAGPCSSVPAGTPPAPSLLDAAAVAAPSAVPGPSLSTPSRPRETTRGEDGVQAYV
NRLLKRVSNPAGASEALSSHSFRRGGAQHANADEKLAPQWIFDRGAWDMSKVNKGFAYVFNTPQEDRKVARVLSGWSVDD
VPKVVDVEVLDHSTQEQLARLQDILYSSCSGLKDPRFNVSGKVLAVLTAYLVKYYPQLKALSPSAPIVLRVEESLDASGI
SHADMIAWSSALNRSPSTTFDRNNKQQDEARGCRGCHHSAVIEELIAMNRTLSARLTIVEAAMLNSTSTQATQVLREQAD
ATSDQDPKPKRRKKQVTHLSTTWYEWYTKVPPVWSSADRQKKSESRHVVAFMKVFLEQGFKLDTKAEDYRDQVLGAGRRA
EEAVIAFLKARGTNAKGSGSVLRALRPLHKDGILDKHIAAYKRLLAIGRIVDPAPIDTQDILAVAGHV
>CryptonS-10_PS_p2#DNA/Crypton 2514-3013  No matches to other crypton proteins so far. [Phytophthora sojae]
MDNRIQGANAPVIAIPQLKHSAWIPVSPDTKSYTIEKRSHTVSERARPRAWPTATKTGSITPALPGFVAAFDGSLRGARG
ARLGALGSGVVGGGGVRHARSALSCWRCGAESVKAEKAAQPAKNKTLRFFLGFGADKPVHTLLKSFGISLMIGSPHWERR
LGPGRLM
>CryptonF-2_PS_pt#DNA/Crypton 2522-4147  Has Peptidase_C48 / ULP1 domain. [Phytophthora sojae]
MEKERRRLNQVPIATKVSKLKEWRDNPKWTAKVAAKQLGVAKGTLMGWKKALWHLLDDPAALEALGDAFRKKGAGKKKRL
KPYELRVLKFYHSCHEDGGTCTFSELLSYARNNIPEFAILKKGTQESWISRFISNYKNKPVGQPSQTGQQSQVGQPSGGV
ASSEDDEPSEDDEASEDDEASEDDRASEDEQASEDNDRAKVKTKQAPVKTRRRGGCNESPVGLKRRSAEPSANEPVNKGS
GATKNLHGNSGNNDVENGSDISEEDVGDAAIEESQEQVKPQSGNKPKGTARPQRIAKRKNRDEPIMTVVHQLAGNKHGEI
IRIPLYQEDLDSLLPGEWLTTRVVDCLIYKHMIKVDGLALPLGTSFYLEIQNAYRRERDGEDVPDEVTGSFDWAAHKFVL
LPISGADHYSFVIIENPLKPAGTICYHINSLRGYHNSASVLDTLMWFLAREAKRCGRETSVAPQLLAYKTSPLQSNSLDC
GVYMLHYMHKVARFISEKRPDSVAEKMKSLTSGSFNVTKAGRSRSALLEALQKDKVAVTVIE
>Crypton-1_NVi_yr#DNA/Crypton 752-1579 Resembles DIRS1-like Tyrosine recombinases [Nasonia vitripennis]
VVLIFGILGALRRGELTNITTDDIEDDSTRLLIKIPVTKNNVPRSFAVRGEFYQICKNYMNLRPTEIDKHKRFFIHYIDG
KCTRQPIGLNTIGQMPKQIADWLKLPNPHLYTGHSFRRTSATLLVDGGGNLTDLKRHGGWKSSTVAEGYINESMNHKEQI
HKKITKSIVLKPTEVVVADNHIPQCDNQVASTSGAEITVDQPKKSVTVSLKRTRFDSEGRDDNEPHAEDEFYRLTETQQA
TCGSPLKKRRQIVMLQLMYIIIIINYNVRYTIFVF
>Transib-9_HM#DNA/CMC-Transib 1226-3083 via tfasty with Transib-4_HM, 1 frameshift and 2 stopcodons  [Hydra magnipapillata]
MINQEDDYNSEEDTQRNRKKWDSISRKSKIRRTEELWKNVNKLAEIENIDLKEVCDFLLSRCSSSSCVKTTQITTVTAVS
ICCDSLLGRSAYRKLRKMLRANNIDVYPSWKEVQDFKNSITPLRTVPLPEPYIGVYSTFTESIKITVAQILKLENVHITN
ELTNLVLEIKFGYDGSGGHKMYNQLHNVNTNNIIMAMFCPLKLLNSNADGNNLIWEQISLNSDFSQRPLMLQMGKESREN
AQSLTIFNAEIKTMKEEGFIIIFNGQYLNIKVNIVADSFDRKASNIYQGLGGAYCDLCDLSKEQCEDICTIEQGFVINRD
IETMEQIFLDLVQKDGSLTKKSKDYDVRHGQTASPIAGSNVRSVQVLHALLRGFDHFMKVVVHLAAGVHAWTESRQPVLR
TSLKxRKNIYRSxLAKETGIKWDFADSSGQGGSTTTGNVARSLLYNEKNRKLITDYISNKHARMLAERYGLLLSNIIRAM
SSSQKINIKKYRDICKETNILLRQEMPWVSLTPTIHKLLGHTWELIELNNDTGLKSWSEEGMEANNKQLRIFREKLSRKT
NQLQNLEDCFKRLWVGSDPLVTEQRNKGRIQCKLCSEIGHSKKTCFKVHENDIVNTLFM
>CryptonF-1_CI_yr#DNA/Crypton 245-2549 via genewise with CryptonF-2_TS_yr, 2 introns (386:503, 1699:1710), 1 stopcodon [Coccidioides]
MATPTLNSQSALMVEMEARVRHALDSALDARPKKTRMQYESRQKEWRHFCRTKSFQNEELVTEQKLLWFLSECVVGRPAK
RSCHSRDRTNENGEPVVQTLGQSFIKAYKTAIVNLWSYXRSCRTNSHPHPVGQAVRALLETHSRQKHERKKAEFVDCGAG
TLLDGYHEKNIVRLVEYCWQGWSEFKKGQSVEPHLRTAVDFLMGHSMLLRGESRRTAQLADLFTLELTNEGPTSCFPMIL
IMGNGKTNQMGRIEYATVMRHRNLLLCTMAQTVFYLFYRWDIVREPPPQFHNRQDWYQLHLIKRDDVRKPLSYEIQLDWI
RRIYSGTGLSGLKKTHAGRAAGARHAEQVGVSKGQICRAGRWNSNALSQCYLTNISRKFVRAMAGFDSRTPGNFYLPRAR
VPVPESLERAVWPWVDDWMRWFESYDVQNPNSCLQRPELRRFSDQNQPRGSSAVQLDRDDLAAQEFLRLLHHLRTVLLQD
SVILQPLFSGHPLWTSPVFMRENYRQFAEAVRMANTHKEKPYEMQLQQTVPMVADQLRIVQQDLDVACGHLHTALETGLQ
KINNQLEALTSGQVSFLVRAFPAGXRMMTAAAVFEDKDEERDSGSTAFREAQAPACLLEIAPASASASVPATYQLSRTIT
TVPDLWQEWTVGLEGGPSVQSLDVLYGAKWRPGGTERMFYSRRKMIIDYINRQRQGSASGSAAVEKLELVQQRGKLSLNR
LSRML
>CryptonF-1_PS_yr#DNA/Crypton 233-2348 via tfasty with CryptonF-1_PI_yr, 1 frameshift. [Phytophthora sojae]
MGSTEAETRMQVALKESVQRTYEKATTLRPKNTQRAYSSRQQEFLDWCSEKGAAFNNLTRFTVTGEKLHLFLQERVIGRT
KRHKSGSTPSDRIETVGRSTVNSYVAAMVDLWKQQSRAKVNSNPSPRDEAVTTLLKLTEYEEDERKRKIFEDRGADTLLD
GYTTIDQVKEIARYFWTPARDSGKNLRNLVAFLLSHYALMRGESARMMELADLHSIVLENEGYTPCRALVMVMRQGKTNQ
VGRIEVGACMRNKHVEICPHGILGFYLFWRWHVDGEAFPDFTSSERWYPIKLLKTGKHPTKPMSYKVHNAAITAALKHVG
VHSKAKTHVGRGSGSRMADLGGASESQIRRLGRWNGQSMEKCYLTSLPRQAMRTLAGFEPSIGSFFVARASVDPPLALQS
MVFPQVEVWQQAIASGTAEQSLAAGGFLELLQYLRKVVLQDAVFFAEIRPTHPIWQHSIFQSREFTEFKSEVMQAVDAME
DPTEQRLQKAVPVLNAKIDGLHQDFKSSLAQVCSTMRTVQGSLSDVMRVLAPLQGGTAVVQVQLLSGGREGDGDTAHVVP
SASPIAIDVQSDRTKYKLRRGLATVPDLWKEWSVGLDGARAVRDLEDQFGTKWCSADERRFFNRGRPIYSLVAAVADDIL
TSARVSDVDATNLAVQVLEEYRRTHNKSLNWIAKHAGEIKDAVQAIAVSRCSVSTTSISDPSPND
>CryptonF-1_PS_pt#DNA/Crypton 2837-4779 R, 1 frameshift. Has Peptidase_C48 / ULP1 domain. [Phytophthora sojae]
MRCHRGFWAYAGDKGTDISDSAARFAQEQASQAEPGANKAAENWLRTRAGRALKKRWEGETAExRQDYIQKNPDATFSLD
DNPLGFADGRQDRRRYPRMVRADIATPVVLQEEAPVAPATTRTPVDTQCREQVDEFKSYQDELLRAAFVAEVTALAHAVR
ANDVSRVVSRSVAVVECMGAQIAASLSPDSRARVVGVIRDVTAYMQAARTQLTMHSDEEADGALHETQTSAAAANSALSN
YVRDTIQVNPDFKAMHEGRENYTTSTTNNLQELYWLGKVPSVRTLQASPGSPAVSSDASATSTTVCQAGASVERLNGSVA
EGAANSSNDAQISPSAQAKPTTITSRKRPRLLEGKQRSATTNSKPHATSGKEQPAGNAADDEDSAYEPSNAEESDVNDDD
VDPPXNRFFRKRVSKNDPLIVWTDLEDDDHPRTVHVYPVDLDSLQTGAWLTQTALDYFICRYMERVKGLIRVCDSELYVL
METARFTRKPKRRRRLLADLVALFDWSAYQYVLLPVSGRNHYSFLVIENPMHPGPTKVYHVNSMKNAHSSAYAFDVLQWV
LSETHKSQAESSAPFEWSTFVHLTKPQQSNCIDCGVYVLHYMDVISKHIAAEKPGSIEEKIAAWTGGDFGVKKAAAYRAK
LYRTISPA
>CryptonS-14_PI_yr#DNA/Crypton 346-2433  [Phytophthora infestans]
MSLSALIPTNTQKARTTGIGAFERMLKVEDVSMDVVRACIFSDSSGKSLAAVMDRFGYYLATCEGKKGKLAPNTAISYFR
NVKLWFFDEYPHLRVPTELILLKQGKTLEKHCLKRDNGGFTNKAPPCTKADLRSLICYVYKTASVASDYEDAALACLMWH
CFGRSSDLGYVTKQHITMSADNVFYIRMLRMKTAEEQGLTLVPDRADFVTCPLHTLAVALVMQESPCVSLLSQLPSLVTP
SAPSLDAAAPLLDVLRVPSVNAATSSQLPAAGMTDPAAATLRSVPSSAAANPSATNQARGDDGVQAYVNRFLKRVSEPAG
ASANLTSHSFRRGGAQHANGDERLAAQWIFDRGSWDMTRTNKGFAYVFNTPREDRKVARVLSGWAADEAPMILDVAILDH
GAQERMTRLQELLFASCVGLKNNKLNVSRKVIGVLTAYLIRHFPEVKTLEPRSLFVVRVEECLEAADISHTDLLAWSVAL
SHVASKPAQQRKDTEKNGCNRTECHHAAVINELIESNRLLSARLLVLEAAILKRPAHEEPAQTTEQEQVSSAQTPAAKRR
KKATTNLSSIWFEWYTRQPRVWSSNDRQKKSDYRLIVAYMKLFLEGGFQLHERSEDYKDRALEVGQRAESAVLGFLSGQG
IRAKGSGSVLREMRKLHRLGALDGRITTYRTHLTSNKIADPAPTSTQDILQFVGHV
>7505609_Cel#DNA/hAT-Ac gi|7505609|pir||T23522 hypothetical protein K09A11.1 - [Caenorhabditis elegans]
MVKSRVWDYFLKLQDGRNKCNLCNKILARGSRGSTHNLISHLTRVHPKEYVLQEEPPVMIAQEDSSEFSFQSNNMKTEDF
TMQSFFEPEFMKLYNDNNITKSIMEMICMDSMPMTTTDRAGFKRFMTSVCPDYELKSPSSMISYELPKLYQEYEDQLRME
LNLAEHVVLSVDIWSDKGSIQEMIGVTGNFLKNEKVVRRTIGVINYQKDVHNGVYVAAELDNLMARFNLNGKVEVVCRDY
NSIVENACDHLKISSVNCFNQQLHLAACEAKSKIGQINRVLLNCKLLVKNLKNSSVTWQTSEKIQSLMEIPNLCLNHCSD
ECWCFLQEFFGRVIECQQVIEELQKLQSSDWDLMRDVVEILAPLSKFSKLSESKESSASVIIPYCDYLVKAYESTQNQPE
AFLAVKEHMERELHKYTSCQYLKFSTLLDPRYKDLYTNDSDTSNLIKAIETEFETMDYKNRTFEEISSELCGPAPKSQKL
DFDAYIQVFKTQNIVKLTNKLQEKIKSRGKHNALTGEKLTVRMEVTRYLSTAVEDVTPRDFWLNDVTKASYPRLAKFARR
FIICPTGSSAAEKLFSTDRATMDEYRNTLSDENLKMLIFLNKNISSMTDLEFETERDLHD
>4753646_Ath#DNA/hAT-Ac gi|4753646|emb|CAB41922.1| putative protein (possibly fragment)  [Arabidopsis thaliana]
MHKRLEELLDFKLMQKESDYLLRVRFFSPTLIMIIINLTEPNRTEPEVEVRFSFRFGSVYNRTNRNETTKMSKPDFKTLG
FSFFSSNFETCGGVSSPSRPSPSKLSSTVTVLRALDSDQPTLISPDMSSPSSHANNNDLLNEEVKVQTSVGKKRTETQRS
SSDHQLKPRKKLSQSSDIRQYFVPKDDDKESTNRTRNDIGRCELFKAYQESSEDKALTSGNPTSLKCDQDEFIRTVSEMI
VLSGLPFSFVESEGFRRFCHNVIPMYEDVSRQTVAKDIAVIYLQEKSFLKVMFSVNKMRVSLTTDIWEAPTTSSSYMVVT
AYWIDANWELQKRIISFKPVLDKKGETIARRLIECLDEWGIEKVFTVTVNNAEGNDHEALTLFQDAMRLKGANALVKDGD
FLRMRCCGHIVNLLVKDSMEHVSDSIVAVRNAVKYVQSSLSRIKSFEFRIETGKVPKGNLSLDSVTEWNSTYLMLVAALK
LRVAFDKMLGEDKLYGKYFLEIEEETGEKRVGPPVSATWDEVERLVTFLGIFFNCTVESSERKAAASSKGYSEIATIDWN
LIKLSNNVDEEVRKEATSIKDKFEKYWDGLININPLVIVASVFDPRKKMKFTSLCFDRLHGKDSLESKNLTLSITSVMRH
LYEEYTIMLDKQSQSDDAAIQSDHRGSEQSGECDGYISSDYLYKEMINEMRKEQAELARDVLAIQMSSFAHESAFCTSGR
VLDPYRSSLTPYTTEALICTQQWLRTSLQSEPPLANLEQMFEELDFQESL
>9294198_Ath#DNA/hAT-Ac gi|9294198|dbj|BAB02100.1| unnamed protein product  [Arabidopsis thaliana]
MRFFCRMDSQTRETLAHLEAENEYLAMNEEAETQGEATQSATQSTQAATTVYNSNKRLKSDVWKEFRPILELEEDGKQRG
RCIHYDKKLIIENSQGTSALKRHLQICQKRPQVLSEKIVYDHKVDREMVSEIIVYHDLPFRYVEYEKVRARDKYLNPNCQ
PICRQTAGNDVFKRYELEKGKLKKFFEQFRGRVCCTADLWTARGIVTGYICLTAHYVDDEWRLNNKILAFCDMKPPHTGE
ELANKILSCLKEWGLEKKIFSLTLDNARNNDSMQSILKHRLQMISGNGLLCDGKFFHVRCCAHVLNLIVQEGLSIATELL
ENIRESVRFVKASESRKDAFAACVESVGIRSGAGLSLDVPTRWNSTYDMLARALKFRKAFASLKECDRNYKSLTSENEWD
RGERICDLLKPFSTITTYFSGVKYPTANVYFLQVWKIERLLKDYAVCGDLRVDKTEIKLGTHG
>47214857_Tni#DNA/hAT-Ac gi|47214857|emb|CAG01224.1| unnamed protein product [Tetraodon nigroviridis]
MLLPPLNQATVELSEEKRVSGSKGIPMLKMLHHSLQRNASKITTEIPINLVDNLKRRLLETLCNLESLSVMTLSTLLDPR
FKTMAFFSASKANDAVKRLKSECATEIRTTVPTQMEDAEAGPSSRPSAPSSDDKLRHLLDVDVKKSRANSNVTTDAVVEV
QRCISEANTPRSQDPLQYWQTQRLHYPNLYKLAMKFPCTPSSSVPCERVFSKAGEMVSKRRNRLGTNMLKQLMFWNKNA
>34909382_Osa#DNA/hAT-Ac gi|34909382|ref|NP_916038.1| P0439E07.4 [Oryza sativa]
MDDPSFCNFELRLLGMRGDDEDDLEEERVEVFGNTASPRIDGSQPETKTEPDDDGTGAGGNGAPSGSSASNKRSRSQSML
RFNADGSVSQWEYKTDVARTELVKLIAREDLPLCFGESAAFEEYIQKAHNPRFCSVSRQTTSRDVFKVFDSQRAMLIETL
KSISSVALTSNIWSGNAKEDYLSVVAHFVNSNWQLGKRILGLVLIDVSHTAENISEHILSVVQEYGLTDKIFSVTLDNAA
ANTKAMDHLKHAISGYVGDLYLHQRCACHIINLIVKAGLEIFKNMLADFRSAISFVNASNQRIALYKSFCIAKGVRPRKF
GLDMDVRWNATYLMLKNLLPHKGIFSVFIATNHPPVNGHALLTDLHWTIAETVLLFLEQFYDSTIIMSGVYYPTSPLIMH
HILEIAGHLNTYENDRNLRNVVIPMKSKFLLYWSEIPFLYSFAFILDPRAKIRGFSNVLQIMTGNYSEYLTEVRAALSDI
YKKYEAKFGDVRLQRATPSSSCGKKKTAWGKIFGSSASGSSVGAGPGVGDGFASASPGAGLSASASPIPGFGASASPGAG
LGAGLFSRRTSATALIQAVYSTANMNASELFAYFDSDTVNQFDDDFNILNWWHEHKHTYPILSLLDRDVLNVPVSTISLE
YAFSLTGRIIEDRRRCLGPAMVQALALIKDWEQAESKKQHSAENKELIKSFEYLYLDDETTGDGDGTGTGDGARAGTGT
>40644297_Rda#DNA/hAT gi|40644297|emb|CAD54185.1| transposase [Rana dalmatina]
LNPSLERDRKMREYKRTLVDALLVQFPPGSGGTVEAQGEGRGGGRGRQRSRGTASTSEGRVSMAEMWKSFVSTPQQTAPP
ADMERFSRRQHFTNMVEQYVCTRLHVLNDGYAALNFWVSKLGTWPELALYALEVLACPAASVLSERVFSTAGGVITDKRS
RLSRANVDKLTFI
>CryptonS-18_PI_yr#DNA/Crypton 277-2367  [Phytophthora infestans]
MSLQDLAPANSQRAQQTAINAFARFLVAEGVNMQYIAATLLGDMTGAKFVKLMDRFAIYLTSAEGRGGKALARNSVMSYY
RHVKNWLLDTYPKNRASIEKKLLKMAQTLERHCLKRLEGGTTKRAPACTKEDLRILMDGLYFDAASSKDYQDAALLALMW
YAFGRASDLGFVAKSNLTVSADGVVFVRLLRVKTSEEQGISIFPDQVSFVTCPLHAIAMALVMQDTPSSRLLDHPQLATG
DEERIVTPTDISLAEALAACDGDDTETASETSSKPRTKKRKTNDESMKIHAYVNRIVKSASEAQARARPTPNLTSHSFRR
GGAQHANGDASLSAQWIFDRGSWNVTSTSKAFAYVFNTTSEDQKVARVLSGWDASAKPQVPTLAWLDSTTREQARCIANL
LFQTSICTEDPSKRLSDRVCEVLTASLIQHFPEVLERYPMCPYVSRMRIILVKLGIEKAQVLAWSSELQRKAMKKSDGPE
GNSGNKFSREDTLINHQNCVISELVAMNQALAKRVTELEKQQAQRDGVISVSMPIPEPGTAGEVAGNTSRHTVTSAKLKG
CGSKSTSKRPAAIWFEWYAKTPRLWDVCENRQKKSAYKQIVNYMKLFLPNGFKLDPSSPTYCDHVLEVGQQSEENMFKFF
VAYGAKRKSGSSVLKQLRKYYHEGKLDALIKEFRARVAIEAIIDPAPRETQDLFVRT
>CryptonS-16_PI_yr#DNA/Crypton 340-2424  [Phytophthora infestans]
MSLSAFVPTNTQKARSTAIAAFKRMLEEEHVSLEFVQASILLDTSGKRLAATMDRFGFYLATNEGKKGKLARNTASSYYR
NVKLWLFDVYPHLRVATELILLKQGKTLDKHCLKRENGGLTNKAPPCTKEDLKALVRYVYSNARVNADYQDAAMACLMWH
CFGRSSDLCYVQKQHVSVSSDGVFYLRLLRVKTSEEQGLTLVPDKDDFLTCPLHSLAVALATQEAPSPSLLGHLPALTPQ
TSATLDAGAPLHDLLSLTPDTLHVAVAPRPTSPQDTVSRNSPAPIPTLDKGVKRGEDSMQSHVNRMLKRVTEPAGVKAEL
SSHSFRRGGAQHANGDDRLAAQWIFDRGAWDMTKTNKAFAYITNTAREDRKVARVLSGWSADAAPKVIDTALLDCTALEH
LERLQELLFATCTGLKERRLNVSTKVLSVLTAYLVRHYPQLKALAPGSPIVMRVEECLVAADIPLADLLKWSIALNEKAD
VPAQDKEETQEATHTCPAMNHLLAVIQELVASNRVLAERMTIVEAALLKSKSSCVNKAAAEEQQQEQESSDQEPKPKRRK
KQATNLSATWYEWYTKTPPVWSSTDRQKKSESRHVVAFMKIFLXDGIALDIQAEDYKDQVLDAGRRAEEAVLGFLKSQGV
NAKGAGSVLRALRPFHKSGALDDRIGAYKRLLATGRIVDPAPGDTKDILAVVGXV
>Ginger2-2_NV#DNA/Ginger 560-2143 [Nematostella vectensis]
MAASVCVDADDFYSKLEELKEKSKSSKSNTTLYICDEFYEKAKQWLKCTTPEEKKDIALSDNDKLKIIRNKWNVDEEGRV
IDAKGKYVVHKSTIHDVLSQAHKAICHRGRDKTAKYLSENYSNLPKQIITLFTSICKLHQEQASLTNYCKKPVTKPIQAD
GFLSHLEMDLIDFRKIPCNCGRRHLWALHVEDHFSKYSWLLPLKKKESLEVAQTIEPLFWQFGFPCKLHTDRGGEFKGSV
DDFCAKFNIPQARGAPRNPSAQGLVERANRLVKENLLSLIKEKGLASNDWCKILNEAAYKKNITLHRAIGKSPYEVVFGI
FPHKEKALTPTREITGILSTVQEEGNNDDKVESVSNTEEEELATVETRAQKRKRKSETVPERAATSKTTTMTVSTIESHD
QNVEEDESGIIIETRAQKRKRENDQVFENQAGYNRKMKETRPRKLNFQENDYVSVKINVVDKGPLHPNSLLAKIIEKAND
NARIVTKFGVIDSLISLNRLNKIAKPNIVFDYSTEVSLTRASKMAHLQ
>39579425_Cbr#DNA/hAT gi|39579425|emb|CAE56362.1| Hypothetical protein CBG24037  [Caenorhabditis briggsae]
MKLLPIARECLDNAQNVSSAIRNNFQACSEMSRLPTLPNDTRWLNGLKCLVDVTELSKEILDLVSKLSLKGRTSMYWLND
HPEYVNAVLHILKPLLTYSIDFQRQDEVTIHRVLHAYKVILNKWSAYKDRDFTKIVDKDIVDLDLIEAMATSGLKPLQHY
YSQFGTHHYGATLLSPRTKHMKNFTKEERKRAISDESFNVKSSEKIEEYWSRKRLDYPALYTVATKVLSIVPSESVCETT
FSTAAFLLDKRRARLRTETVEKIVFGSQIASKNPDWVDDLKTN
>Ginger-1_TriAdh#DNA/Ginger 439-2012 fragment via genewise with Ginger2-1_AP, 3 introns (721:877, 1083:1170, 1399:1536), 2 stopcodons  [Trichoplax adhaerens]
KIAKTIFVTTKYKLLLNYSLLNIIRGDIIDMQAQPDGGYKYILNYQDHLTKFCVLRPLKSKXQEVVSREIFEIFGLLGAP
TILHTDNGREFSNKYLTEILTIWPNCKQVHGKPRHSQSQGSVERANQDVEVILACWKREHSIVNXASHLPLIQWQKNSRF
HSGIGRSPYEAMFGKKPRVDIDGRKFSKSVLDKIGYIQGTDEDNIESQPFENIPDSEDELSSQESSFDDLESNADLCVKE
HTRNLRQQSKRKLQQQAETMLQKSVKRLKSGIVGDTVLIPLPEPDREKSQLRNVQACIFSVSKDNYYQLGTWHGLINRLH
DATQLTLCKESFLAKDDINCNVKISLRETAKLESVITGQKSHFCGCYTSCITSRCKCFKANVKCNSKCHHQRTCKNK
>Tip100_tp#DNA/hAT-Tip100 1329-3755 gi|4063770|dbj|BAA36225.1| transposase [Ipomoea purpurea]
MKKTQKIDLFFKRKNSEDSTSQVNPFASIEPLNSESRPEKAQRVEINEKFDIQALERDPGLRLPIWKCPIEKRDEVRRAY
IKAGPYQCLLSKYPKSGEKHPRSFQASWFKLFPSWLEYSPSKDAAFCLPCYLFHTQDGPSGLDAFTINGFRSWKKVRDGK
NCSFLAHIGKDLTSPHRNAEKACADLMNQQSHIAQHIEKFTSQEIAENRLRLRTSIEATRWLAFQGCSFRGHDESITSTN
RGNFLELLSFIASFNDEVTKVLDKAPRNASYTSPTIQKQILQVLATKVKSAIREEIGDAKFCIIVDEARDESKKEQMSIV
LRFVDRDGFIQERFFGVVHVKDTSASTLKEGIFSILSRHNLDVQNIRGQGYDGASNMRGEWNGLKALILDECPYAYYVHC
FAHRLQLALVASSKEVIPVHQFFTKLNSIINVVGASCKRNDQLKAAHASNISHLLSIDELESGRGLNQIGSLQRPGDTRW
SSHLKSISSLMRMFSATCEVLLNIIEDGTTHAHRGDADAAYEVLTSFEFVFIMHLMKKVLEISNMLCQALQLQSQDILNA
MHLVSSTKLLIQTLRDSGWDELVASVKSFCETVNITVPDFDAQYIARRGRARHQQDELTIGHHYKVDIFYAVIDSQLQEL
SNRFDHKAMELIVLSSSLDPKEMRISFRIDDVCKLVEKFYPQDFEDYETLQLRVQLEHFEHVQQLPDFRTLESISDLCRW
LVKTRKSNIYPLVFRVVTLVLTLPVSTATTERSFSAMNIVKTTLRNKMEDEFLSDCLLVYIEKQIAKQFSIDSIIDAFRD
MQERRSKF
>HAT-30_SM#DNA/hAT-Tip100 664-3120 [Schmidtea mediterranea]
MSKRKQTTLLNFFAKKQSRSSESEKIAELEPEKANNEFIAVADDQIMHVDHQAQPSNSQNLENRNDNDNDVHNVLSRHSN
LNILKDEEKIYYLNNFWKPPPNFCFPGTKIQNENFKRKFNYSWLLNYPWLVYSKSIDAVYCKYCCLFATNNPADRATQAL
GQLVKDPFKTWRRATRTFNKHQITNYHKYSVLRADDLQTVVDGKRQSVIDLIDTCRVKQAKENRLKLTPIIKTLLFCGRN
GFPLRGHRDTDTFNMNIDEIDKSTIRQEGNFRQLIRFRLESGDQALKEHLETSSKNANYLSWKIQNEIINACNQIILKRI
VERANQSECFSVLADETTDMSTQEQFSICIRFIDKDKKMNESFLQFVPVVSTSSKSLANTLVQFLSSIGLNLSYLKGQGY
DGAAAMSGRFNGVQAKIMDLYPSALYVHCASHSLNLALSDVCQIQDIRNCMGVVEKCYSFMNTPKRDAVLQKKISDICPD
AKRTKLKKLCPTRWVERHDSIMIMVELLNPLILALEEIETWKDKESSSGAHILLCAIKSTNFFLSILTVEKIFSYTLPLS
KILQTESLDLVTAIKICEDVVGQFEKFRKSAVTVFNEIYKRAEVLLREMVDTNYAISIPRINKRQIHRCNISSQSPEEYY
RISLFIPFLDATVTQLKERFLKHKAILKAFNILIPSNTNTSHHEYSTNLEILLQKYNTDLNCTINMLIAEYELWQTKFSL
NPIQKNASVLQYLCECSEEIFPNIFKLLKILATLPVTTSTVERSFSTLKYLKNYLRSTTAEDRLNGLALLYIYRDMPITE
EEIFNILQEKKRKLDIVL
>Zaphod2_Hma_tp#DNA/hAT-Tip100 ref|XP_002155742.1| PREDICTED: similar to zinc finger, MYM domain containing 1 [Hydra magnipapillata]
MKKVKSGATKRREKAAAMEKIMKYPKLTHFLKPAVPASSVLISTNNFDCDYLGTRLESDGLIYDSNAKSNVSHGLICESN
ATTNPLIFLSDDPSDWPDNVSDAQKCDVVKRGLKKIEIDFPKNSERRRFSMSYYNRKMKNGEIFERSWLIYSLNSDKVFC
FCCKLFGITSSPFRKGINTWEGLSKKLKEHETCSAHLKCFEHWMTLRKGIANQATIDEQQQKLLHKERVFWRSVLERILD
ITLFLSSRNLAFRGSDTAIGSKSNGNFLGVFELLAKYDAVFKELLLRIQDKKTNAHYLSNDTQNELIRCLAQEIESENLS
MVKKAKYYSVILDCTPDVSHKEQMSIILRSVTCTSRVGINISENFFGYLTVNDTTGKGLLDAFLNQAKKWDLNILDCRGQ
SYDNGANMKGKLKGVQARLLEMNPKAIYVPCANHSLNLVIVDGALSSISAISFFGVLTRLYTLFSSSPPRWEILKSCVEI
SVKPQSDTRWESKINCVKPLRYYLKEILEALDRLEKHAFEKKDGATATEVRSLIEYIRTWPFLLSIIIWYDVLFQINKSS
KLLQSSTTSLDILASEIKATNTFLHEYRETGFTDAHIKAQEIAEELGIEKIFPTVRLRKKKKMYSYECADETRQPEHQYK
ADFFLPLIDMSIASVKERFEQVSIFTNLFDFLYRSESLIKACNENSLTVFCTNLQTKLGDIDSEDLEMELKRFVIVVQED
KNTNLKSAYDFLNYVYKEELQETYPNLVIALRIILTSPVTVASAERSFSKLKLIKTFHRSTMVDERLSSLAMLSIENEVA
RKLSYEGLINKFASYTLRQYAKLKMVIFVF
>ZhAT7_ZM#DNA/hAT-Tip100 503-3111 via tfasty with 37537014_Osa, 1 frameshift and 3 stopcodons [Zea mays]
MKRKLKTIDCFFQRDNPRATPIENPNLTNVQDSDPINLHTEAAELNQQETLATAFERDPGKRVQILRLPFDQQDEARRFY
ISEGPYQVILDEYPLNDASHARRFQSNWFKQFSWLEYSPHTDRAYCLPCFLFSKKPIGKYGSDTFTVKGFNNWKKVNEGK
ECAFLKHMGNSGSAHNYSVGCFNNLKNSMTHIDKVMVKENEKLVAEARLRLTTTINSIRxKISLFFMMFIPMYTLLCIII
ILIIxYLKPCMLCRWLTFQGCPFRGHDESQNSLNQGNFLEMVKLLASYNKEVKGVVLQNAPRNAKYTSSDVQKEILSIVA
RKVQKLIREEIGTSKFCIMVDEARDESKKEQMAIVIRFVNKEGLIKERFLDLVHVKDTTALTLKNSICAVLTANSLSIED
IRGQGYDGASNMRGEWNGLKALILNECPYAYYIHCMAHQLQLALVAASREVQQVHNFFQHATFIINVVSSSTKRNDELLA
AQAEEIAREIELGELDTGQGANQMSSLQRPGDTRWSSHYKSIQSLKKMFSATISVLRSIANDRSVSKYSRGDAAGALQII
VKFDFVFILLMMEKIMKITDVLCQTLQKKSIDILNALDSVSNTKVLLGNLRNDGWDPLLQEVNYFCEKNDIDILDLNHKY
VSFGxIIAQLLFISYELILFAFYHICRFVDVTKSRNKNDNTTVFHHYKFDVFNVAIDQQLNEIEDRFGGQATDLLSLCAS
LNPILGSFDIEKVCSLVEKYYPADFSNQERMQLECQLPHFQLDVCNHPELKGLSSLADLTSGLVKLGKDSSYPMVDKLLR
LLLTLPVSTATTERAFSAMKFVKTRLRSKMGDAYLRDYLVVLAAMISSDDIIKAYDLANTRRAKFKITEM
>Zaphod2_Osa_tp#DNA/hAT-Tip100 |gb|EAY87545.1| hypothetical protein OsI_08956 [Oryza sativa Indica Group]
MSSRNRKYDSGAEKRKKRKRLEAVAQSQKGALDKFFLRETPNANIEDDISDDMAEVDANIAESDDAVEENVDGDIGHDLA
DEGRDLASEGNEENIADDADDNVSFRPDMFDPRTWDGLDPKMIDILLQKGPKRDLSIEHGPRDNLSRRFLASSYTKVLSN
GEKCDREWLVYSKELDKVFCFCCKLLRKGLVRGQLANDGVNDWNHLANRLKEHEVSREHVTNMSTWYELRLRMQKNQTID
KVAQRELEKEREHWRRVLLRILLIVKFLAEHNIAFRGSNSKLYQDSNGNFLGLVEMLVEFDPVIKEHVDRITNDKIRDHY
LGPSIQNELINLLAVAIKSSIIAKIKEAKYFSVILDCTPDASHQEQMSLIIRYVDVTTCSIEESFLGFLDVNDTSGQGLF
DVLVEELNSLDLDVANVRGQGYDNGSNMKGKHQGVQKKLLDINPRAFYSACGCHSLNLTLCDMAKSCRKATEFFGVIQRI
YTTFANSTKRWKILKDNLSGLTLKSLSSTRWESRVDSVKAIRFQIPEIREALLQVAETDNDPLTVSEVNSLSENELGGFE
FLVAIIIWYEILSSINVVSKQLQSKDMVIDIAIESVQGLISLFKKYRENGFSKALEAAKQIALEMDIPIEFRTKRKIKRK
RQFDEGTSDASIDSQSGEESFRINYFIPVVDQAIASLIRRFEQYQGYEKTFGFLFTSDRLRLLDDDSLLAACENLEVALK
SGEHKDIDGKELSDELGLIQQILKKSMGPLDILQFLKERPFYPNATVAYRILLTIPVTVASAERSFSKLKLLKSYLRSTM
TQERLNGLATIALEKDILEKINYEDIIEDFISRNTRRMMLFSRS
>HAT-27_SM#DNA/hAT-Tip100 602-3100 [Schmidtea mediterranea]
MKRNYASGAFKRKKKAEREEEIKKIPKLDCFFTKDSATESEFVAQEDRHQSDQIEVSSSTSNQPIFTGSSNQVFNDFENN
LELVDNINNENLVESLIESSPNANRENDVGLWGELSSEDTLYWIEKGPESCQHSTENFHSSKQLYNDNTVRYCSKTLFFD
EKTNGEKYTREWLVYSPKIGNVFCFVCKLLTASNFNLATNGLRDWKNAGSSIKSHQNSSEHRNALVTYLTRKSNYSVSDQ
LQKEIQQERIYWRKVLERVVAVICTIVERNLPFRGSNEIFGMEGSGNFIGLLELIAKFDPFLAEHIRKFGNPGSGKTSYL
SKTIFEELLDLMAKTVLKSISDDIKQSKYFGMSVDSTPDISHKDQLCMIIRYVDQINFKPIERFLNFIEIENHTGEYLAD
ISLEFFEKDIGLNFQDCRSQSYDNAMNMAGKYKGMRAKVLEKNDKAIFLPCSAHSLNLVGNSGADCCIESINFFGLIQEV
YNFFSSSTERWNKLVEFSNRTVKSLSKTRWSARSESVKVIHENYENVMEALNAIIEDANFYGNTRNEANNLLNKMEEFEF
ALLVIFWDQVLERMNAVSKNLQSPKVTLDVCSSLYASLASYITNLKNSFDEIKIEAKKLLPNTDYTVKRKRFKKKFPDED
QTTTEPEISAKENFRNNVFMKILENIENNLIQRSDCYLEISKVFGFLTNIELSQEDLKQHVNNVVEKYPDDIDDSLFFEL
LQFHEYIRNDWPNDHPNHLSFYEIIKEKNLEIAFPNLETILRIFLCLMIANCTGERSFSKLKLIKNFLRSTMSQKILNNL
ALLSCNIDKLKAIDFDSLINQYALEKFRKKVL
>hAT-3_AMi_tp#DNA/hAT-Tip100 526-3026 via tfasty with Arthur1_tp, 2 frameshifts and 1 stopcodon.  Arthur-1_Croc would have been a better name.[Crocodylidae]
MKRHYESGSQKCKKMKARQEDEAKQKDSLSSYFKKLEILNSGHSSKSMGEETSELSDHLLSCGDTTTTAKVEQVDSEVTM
ELQNIGNFVEVREETYPEDIALWPKSVSLDMIEYFLVNKPKNEVIWKIxEKEYEVGGRKQFRGLHESHFLRMKKNGMTEM
RIWLIFSETTKAVYCYVCKLFPDHSKGKQTFVDGHSNWRNIARDIADHETSKAHINAMCKFVQRCKLSGRIDSVLSAQFE
KECSYWRKVLRRVVATVKLLSSLGLPLRGHDESSLSNRKGNFLTCLEYLSEFDDFLKEHLKNYQYCGSGKTNFLTHQTYD
EFITIMAERLRNQFTDEVKDAKYYSIIVDSTPDVSHVDQLTLILRYVTGNGEVVERFLCFVPLKSHTSECLETTVLEIIA
NLGLDIKNCHGQSFDNAANMAGKYSGLQARLNNASPSALFIPCSSHSLNLICNAAAESCEGATHFFYFVQNVYAFFSVST
HRWSMLQSHLEQANEKHLTVKRICDTRWSARADAVLALKMSYDDIKKTLLDIATSNSEKPRAKTEAKSLAEKFEKYDIAV
FTLLWNRLLQRINAVSKLLQKVDTNLLNAAQLLASVKSFVMEVRNDYSSVEAEALTLTENIGSSDISDEKRKKSRKLFFD
ETRDNEINLKGKEKIIVETVNVICDTIIVQLQSRGKSLKKTVNLFCVFFDRSMDENAKSHYSKKLSEFYREDIDTNLFED
EVKHFIHFIENDEVCASRSPVDLYRLVRDGLQATFPNVETILKIFLTIPVTNASGERSFSVLKRVKNYLRNTMSQEHLTS
SAILTIESASLQNITYDDLIDDFVKKKCRKKAI
>hAT-1_ADi#DNA/hAT-Tip100 1851-3676 via tfasty with HAT-4_NV, 1 frameshift and 1 stopcodon. [Acropora digitifera]
DIGDLLSERHALEKSKNRKILLSILSNIRYLARQALPLRGDWNTETMSEENSNFHQLLXLRAQENPEIIEWLRKRDEKYT
SPEIQNELLEAMALGMMRQISANIQNATFFTIMADETADVSNKEQLVICIRWVDDCFVIHEDFIGMHPLERTNADQVVAI
LKNALLRINLNIQRARGQCYDGAATKAGEKTGVATQIKTINGKCLYTHCYGHASNLAVADAIKSVQCISDSLDTVREIGK
LVKKSPQRNTKLDKIRAEAXAFCPTRWTVRGEALAAVINNHAELMELWDWSLTVSKDAEMKARIRGVKSMMTTFDFYFGC
TLGEQLLRQTDNLGRALQDSSTSAAQGNRLTQDVVKTLLKDRTDTSFSLFWARILQGKTTEIQTIEDPKLPRKGKAPVRH
EFGEQDTHHFPETPKDHYKRIYFNAIDTVTQCVATRFEQEDFKIYVNIQEILLKSFASERCDTELAEVVKTYGGDSDSFE
LKGQLLLLPQTAESMGFDTxEFDVNDLVTFXQSLHISRRKLLGEISTLGKLLLVMPATNAVGERSFSSFLRRGKTYLSST
TGDSRLNXHSMLHVRKDGTDAPTLVDVANDFVGEKENRKQLFXKFSASD
>hAT-4_PTr_tp#DNA/hAT-Tip100 863-3316 via tfasty with Tip100_tp, 1 stopcodon. [Populus trichocarpa]
MNKIRRIDSFFEKKRKNIDNSQPSEPTPMCNVEVMVEQPQCASVYEEPALISEQPPTRIDIAHLIRDPSNRPQIWEYPVN
QQDEIRRAYINLGPYQPLMSEYPLTGKKHPRRFQSHWFKSYPWLEYSEKNTAFCFPCYLFPSKPSGKPGSDTFTVKGFNC
WKKVNDGERCAFLTHMGKGPNSAHRFATRCLENLKNQSCHIEKVVKRQTTQEILNNRLRIKASIDIVRWLTFQACAFRGH
DERPExKNRGNFLEMMELLASYNEQVGALVLGNAPQNAKYTSHQIQKEILHVFARNVQSSIRHEIGDARFCLIVDEARDE
SRREQMALVIRFVDRSGFIRERFLDIVHVKDTTASTLKEEISFVLSHHNLDVQNIRGQGYDGASNMRGEWNGLQALFIND
CPYAYYVHCLAHQLQLALIAAAREISDVHTFFQNLIFIINIVSASCKRNDELRAFQAATIEHLVDIGEIETGKGVNQVGG
LQRPGDSRWSSHFKSICSLIKMYGATCLVLENIALDGSTYSQRGDAAFSFKLLMSFDFAFILHIMKNVMGITDVLCQALQ
QKSQDILNAMHLVTTTKTLIQKLRDDGWETLLEEVTSFCKHQDIEVPDMDACFSSVGRSRRKKKSVTVEHHYRVDIFTAI
IDQQLQELNNRFNEQAIELLKLSTTLDPRNSYKLFNVEDICLLVDKFYPEDFSDQEKIHLRLQLQHYELDVPNHPKLKNM
SSIADLCQGLVETEKSTIYPLVDRLIRLILTLPVSTATTERAFSAMKIVKTRLRNRMEDDFLANYLIVYIEKEIAERFTI
DMIIDDFYSMKERRAQLK
>hAT-12_AMi_tp#DNA/hAT-Tip100 1392-3986[Crocodylidae]
MKRTYQSGASKRKETKEKKARDEKGRQTLDQFGWVVKGNKEVGSGTGDAGGTSLAGDEEYSDHENITKEASSDVAGECEN
ESGLVVQAEGDIASNEKNETIDLVSGSAPELHQEMFSNDPATWGHLDRLQRDLIVSKGPPPKPASFPCDSSKWSFPTSVF
CKTLSNDESVKRDWLIWSHKAAGLFCFPCCLFRDQNKNQALYHSRFCHGGVNDNWRKLYDKVKSHEANSGHLQHYLQWKD
LANALSGKGAIDNALEKGIHSEKEKWRKVLRGLVDVTLFLAEQNLPFRGSHSTLEHDDCGLFLSTVQFISKYNQDLNCHL
ETVTEHRMAGERMQAHYMSWRSQNEYLEVCAKKVLNTILEEVRNARYYGIIVDGTPDVSHTEQLVFIMRYVHEKDGKWDV
QERFLKMVDCDKKKGVDIVEQIKKVLAECKVELQNCRGQGYDNASNMSGKYQGVKTRIQDENPQALFSPCSAHSLNLCGT
HAMEKSPEVKTYFGNVQKLYTVFSCSPARWKILQETAGLSLHSVSTTRWSSRIDAVRPLVKNPKGMLDSLFKIEEELDLT
AETQADVSGLIEWMQSFEFILLTTVWYKILQSINIRSKLVQGSKLTMEEGVQHVKSLLEEIQRLNDSWPSLLTEAKVIAE
GLGITTEFKRTHRRIRRTKHFHNEPANTEHTISSPEDKFRVEVFITAMDMLLSDLRSLAETTGKLSSLFSPILDPPAVAE
DEEIAKFAESLSTTYPRDVNKDELQEELCLFYKIRKDSNLCTSGGAMGTALELLNQIYGKGVESVFPQICICLRMLIALP
VSAASGERTFSKLKIIKNYLRSAIGEDRLNHLIMLSVENALAKQINYDDVIDDFASMKARKKYFT
>hAT-6_SBi_tp#DNA/hAT-Tip100 563-3196 via genewise with Zaphod3_Osa_tp, 1 intron (1980:2073) and 1 frameshift.[Sorghum bicolor]
MLPKKHESGAAKRKRKRQEEQFRQSQQGALDKFFSVSSSAVPEHDENPIDAPENQEEPRTENLQPSSEPGNLQPSYDNDN
ISEQIDAWMNEXTASSEPENSVDDVQPSIHDVFDPRTWENLDNKGRDILIEKGPVRELNLEFPADARNRRFSYTYYSRKL
SNGEVVDRKWLVYSKHVDKVFCFCCKLFRSDQNRSLVAHDGLRDWKHLSARLKEHENSVEHIRNMNSWNEVRLRLSKNKT
IDDDLQREIAKERERWRQVLVRIVSVVKFLAKHNLAFRGQNEKLYQPNNGNFLGAVEMMGEFDPVMQDHIRRIQNSEIHH
HYLGHRIQNEMISLLADCVKQSILKIIRNAKYFSVILDCTPDVSHEEQMTLIIRCVNISENVPKIEEFFLEFLKVDDTSG
LGLFNALQSALASLGLNIDDVRGQGYDNGSNMKGKHQGVQTRLLEINPRALYMPCACHSLNLTLCDMGNSCRQAISFFGV
IQRIYTLFAKSTKRWKILVDNVPGLTVKSWSNTRWESRIKSVQAIRFQTPQIRSALIALEKASTDDPGTVSDCQSLVSAL
ENFEFLVGLVIWQDILFSINKVSKKLQSKIVSIDATLKHIQGVIAYFEKYRDEGFISSMETAKNIASELDIEPIFPTKRQ
RKRKRHFDDQDDQDEEIQQSAMDTFRREYFLIMIDHAIASLNSRFEQMTVFDNIFGFLFNSKKLKSLDEVDLWAHCKIFV
DKFSHDNSSDVEINDFFQELKVLQMALPDSMMSAPEILKFIMDADCYPNVSVAYRILLTVPVTVASAERSFSKLKLLKNY
LRSTMSQERLNGLAMCTIERDILDTIDLNTVLDDFASRNARRSIFV
>Kolobok-1_FraCyl_tp#DNA/Kolobok-Hydra 6716-8962 [Fragilariopsis cylindrus]
MMGGDRIFVNKIDDRNVIIAWKSITALLVENTMCCKCKKKNTMEFCAETIGIATKVSLACKNEICEKYNKWSVKEPAMVN
LDKLVDDKCDPYDIKQCGNRATRQYQLNLDLTLGIMMIGGGGHDYALVASQLNLCCSQRQLLDSFTSNEETMALHIIKMA
EEVVERNLNDEKKESQLVNDPITDEVHLVADTIRKRKAGENNPRSNTPALEVDAVSLDENQEARPRPKKKRNIGVSMDAG
WRKRSSGRTYDAQQAQFFAFGVETNKILYFEQMSTRCRKCEHKLEHDPKLCSHNYTGSAKGMEPHAALKCIQSIFSKGDA
FVGTIVTDDDSSMRARLKQNGREKIEAGLCRKEDLTPTIQLSNKNDHGALELNIPEPICKADANHRVRGFGNAVQKLVNM
RNGESGGVTGVDRDRLKVNFAYARAKNVDKDFNLFCAAFAPVIEHHFNNHELCGEWCAAKKLTDTKKSADHLHYRCKVKN
KLMYDNLKEIHKRYTTEQQLREIHHKVNTNLSESANFVVTKFLPKHKNFGTTIADKGRVHFSVCIITDGYKSTMVELYKR
MGFENNLLRVKGWTDIEKKRTYKKHYIQLDTIKRRRMMRKNIKKRENRKKEEKSQDKGEFYKPGMGLNEGTSRAALNTRK
KAKKKVTTAAIDGKKKRTSCKLCKRKDHVNKSKHCPYHKNYVTKEGEDPALIKAMILEYPNGIPDHTVVEELKHDEVNLV
DEPVESVIDENTGKWLCAKCEMGGMGGIM
>Polinton1_SM_py#DNA/Maverick 7057-8274 [Schmidtea mediterranea]
MICGKSELCLFDRPSPQAVIEMGAFEDVFPMNSIMDSRTDIEFHINGSQTEYLDLNDTLLTVQIKVVDKDRKPLGEPSDV
IPNNFLFHTLFKDAVLGFNNIKIEGGNSTYIHNALIETIINYNSDTKNTCLIPIGYGSDDDRKKWIKGSKLFTMGSSLQL
DFMDQPKYLLQGVNVHIKLKRSDSALSLTSASTAPILQLVDAKLLVRRVRVEPSVLAGHQLGLNSKHAIYPLKTKEIVQF
AIAKGSASFYKEQIFGDRRMPNFILVTFQSESQYNGSYLTSSSIFKIFGVKSLTLSKNSDYRETYTQDFDNDNYCATYMQ
SIVRNMGYLDKNLNCGITLDDFKNKYLFFTFVLAPDFDLNQSQLPQNGNLRLDIKFAKATTEPVHVVIYGVFENEVQITA
NRTVLV
>Polinton1_SM_int#DNA/Maverick  4633-5775 (deleted the (TTA)n simple repeat) [Schmidtea mediterranea]
MSNLNLNPLVVMEKIWTNPEDETGFGGVAKLKKRVPKSKKETQKWLSDQLAYSLNKPMRKRFPIRAYKTFGINDLWQMDL
MEMIPYSKINKGYKYILTCIDVFSRFARGVPTKTKSAEEISKAINNLFKNGHPDNLQTDLGIILGKEFYNSKVKQILDRL
KINHYSVHSKYKAAHVERFNRTLRDRLKKYFVHQGNKIWINVLPKILVSYNNSSHRGLNGLRPVDISSKTRVQSKKVTIT
KPKYKVGDHVRISKISASPFIKNFNSNWSDEVFQITKINTKQSPEMYVIKDSDNNVIQGKFYEQELQVISKPTVFKIQKI
LKTKMVGKNKQYYVKWHGYQKPSWISSKDLVK
>Polinton-1_AMi_1p#DNA/Maverick 3386..5317[Crocodylidae]
KKGGGGAGRRIHLRKSVQSALKDHDYYRSKRVNFTQRGGSLCNSDSSRGLYHKRGSHGKRGGKNGWRTSKWLAGRKVRAW
LKRSVGKAKHRLRKNKRSPSNGTLEGPSNASPPPRPDPSPGPTEPERGGGEYDLGSPLEGPSNVPRPPRPDLSPGPTEPE
RGDGDYDLGSPLEGPSNVPRPPRPAPPPRPEGSESWDSESGVEDSLEDPSSAPRSPESAEDVLPDVHMVRVRRQEWSVAR
FGGMRYTEEFRFVNLERVPLHVAYEAISRGVEEIVAELRQRFTGNDYAQLRIQADSMANCLYSRSINLNQMTPELFLEWF
SNLLQSQREILLDSTFRLVVVVVRGRGGGSRRVISSIPYSQIIAKKRKYLIDLNTYDTNLCFAGSLLAVTKRRGARDAEL
LDGAKELHRKLGMSIYQKVMLHQVPLFEDLEQVNIHIVMHKEKNGWSLFKTQDAPRYPDTCFLLLHGEHYYGILDVKKVF
GMRNYCDLCQTLYSHSHACRFRCRLCLSPNCAENVGRTQRCPNCKLFCRSKECLERHVALASEKRIECLTKTLCDECKSY
VDKKHECKGRQCKQCYGKITDVNKHWCFMRQIKEPEEGEGYIFYDFECVQETGMHVPNYIFAMELKTGGKKTSESRRQKP
PKGL
>Polinton-1_DAn_polb#DNA/Maverick 2035-6214 via tfasty with Polinton-1_DY_polb, 1 frameshift and 4 stopcodons. [Drosophila ananassae]
MESKIVCDQCKKVITVNEFITHYDSCEGPRNAFAVLMNNNPRSSNSSGNKFYRSRTTVPANNSGKAKQPSSKATVMRGDG
LQGAANHLKRKAGKENGAVNNDVERSDLEEQPSTSKRARIVSSNHLKRKAGKENGSVNNDVERSDLEEQPSTSKRARIAN
AEDVNDSKICMDCKESYNSYNEMEHLTSAEHRAALKKLVWGNKNIFPTIENNTFHVEKFRVIGESDICLKEFYNKCKQNL
LNIIKHGMSEHRSLKVTVSVHGRYIKPADEADTFIETIKNFATPSCSIYENEYEDVEKILNNCNDLLIARADEFQEKDSG
WSIKQFEYYEIQTVKLQHLPGSGYVIAPQNIRKRNALINVKNNDVYCFKWCVLAHLSYMRHIKENFSTSAEKKASREKLA
RTSFYRVFDISQPFITHEQECLNFSGIEFPITKKGIQLFEKNNAQYSINVYEIINNRIVGPTIRTKEVKQKHIDILGINN
PKEKCMHYAYITSIKTLCKSQINSSNSERYFCRNCLQFYCTTNKTHNIKECGQVASIYPEPNTKSSFKAFSKKLSPPVVI
YADIEAVLENYQTASNNPEASFTLPKQKHTACAVSFYVAHKYNPELNKLWTYDGKxIKNKIISLNKxYxFSYLxITGADC
MKMFVQTLKDETMALYQKYWKDCKEPIHEFDIDDEDYQEHGNCYACEEPIEMDDRDKYFDQFSGKYQGPIHKKCKISFKL
SSAFFPVVFHNLSRYDIHLFINELGGELKPIPSTKELYIALTQKIFQKGVANYSIKYIDSNRFLNSSLEKLASNMEDKDF
KILKSKFSGEKFQQMRRKGVFPYDYIDSFSKFNETELPPREYFYNTLTDEECSVSDYNFAKEIWDSFHCRSLRDYMKLYL
ESDVLILADVFENFRNICQKIYKLDPVNYVSAPSISWDAMMKYTKAELELISDPNMYNFLKRGIRGGLTQCTQRISHANN
EYMKNYDEAKPKNYLSYIDANNLYGWAMSQKLPFSNFKFLSESEINMFDIINTDSSGDTGFILEVDLEYPDDIHDKHNSL
PFCPENKVPPGGKIPKLLADLTDKEGYIIHLKQLQLCLQQGLKLKKVHRILSFSQSYWLKPYIDLNTKHRKLAKNDFEKN
FYKLMNNAVYGKTMENVEKRRNIALVTHYESRRNSPGFRQRVAMHNFHSLEIFGENLAAIESTKTSILYDKPIYIGFSVL
ELSKWLMYDYYYNFLLLECPSAKIIYMDTDSFIVSCEEDIYTIMRENPSRFDTSNYDNINPFNIIPANNKELGLFKDENA
GKVMTSFAGLKAKAYSFLVETTNDDINIKKVKGVKYSVIKKLSHLDYIECIKHKKTYYGEQRCIRSRGHQLYTEVINKIS
LYYKDDKRYVLIDNINTLAYGHYLLREILNSLN
>Polinton-1_CI_px#DNA/Maverick 11209-11955 [Ciona intestinalis]
MVEDFYVTLPSNASLEYFPNNTLTNYVTRLPKEFHLQGTWVVGLTEVAFPYSWYTIPQQAVTMKIRRGPDLGVIEADISP
GYYNSPKELIESIVKLFTDVGYANNIEVSYNDLTGKVRVNVHKKGWYLEFSDVLSRMLGYDKKRLRRGSHEAERVCDISL
DMSLLYFYSDIVQGRSVGDTLAPLLAIVPVKGRPREAVYQRFDYPCYHPIQNKVFHTIEVDIRDSLGKKILFQRGRVCVT
LHFKRVNKA
>Kolobok-2_XT_tp#DNA/Kolobok-T2 1790-4138  [Xenopus (silurana) tropicalis]
MPSCIVKGCSTWTGQREKNPSIILHSFPKNIEQIKKWLAQTGQFCDDIDAKAEEILKGKSNNRFRMCSRHFSRDSYIAKG
VKIQLKPNAVPTIFNIVTPDTSIAILHDIPSAKRRRVEDEPSTSSCTVRIISRSVTVATQTDQKIFTCDSSVNTDNWPLI
YNVQTQTVPFAITKDIEVQTGSHYVNADAWKIRNDHRYSTCFSTPVKENQESKNVPISHSTPIAFTGNTQLSPINKPDSE
AEEVEESVSFMDDPKDLTYNLSKSSQSKSLIYCSSESDCDDSIHRQVDTVRERKFIVFEHCLDILFHLVRCQYQIENCCD
APVVEIKKKIDGSQLSVKLTCLNGHQALFWRSQPVIKSTSAGNVLMAASVLLSGSSFRKVHEMYSILGVSTISHTTFYNY
QRAYLFPSIDYHWQQETNNIRKEIGNNEVVIAGDGQFDSPGHSAKYCIYSLMDVLSKKIISYTIEQLGPGKNSYNLEKES
FQSCLDGLLADNINVKIVATDRHSVIRNVMSTKYKNIDHQFDVWHLCKSLNKKLMAASKKKNCGDISKWISSITNHLWWC
SQTCDQNVEVLLSKWKSLMFHISNVHTFPKLEHYKKCIHPKISRKEVRKAPWIKPGDPAHATLASIVNSKYLLKDMHHIE
KFCHTGDLENFHSKVLKYRLKRIAFKIDAMHARTVLAILSHNRNVNRPQATVKCAKKSTLPVGSKRYKFVFPKHKKNWVT
RAIYEEVVDDHLLDIAGDSLKILSGELIHNWDSKSSSVPANIATLERPDKNELISKHVSRFAR
>Kolobok-1_BF_tp#DNA/Kolobok-T2 416-4176 (4 introns) [Branchiostoma floridae]
MPSCVSCHNNNINTKSKAISFHRFPSEDKIRLQRWLIAVRSNLREPWTLEKIQDSIASKNPAFVCSEHFSADSCIDNPKA
RYVPYSVPAKVLLQDAFPTQFGRSTSRVSSERQREKRDRKELLQKLLQQSNDACDHQMTEPMSSVDETGMTEASDAGAAS
PSAPQTKFNSGIVTSQGLLDSGVSTSSLLSDSGSSTAQSMLDSGVSTSSLLSDSGSSTAQSMLDSGVSTSSLLSDSGSST
AQAEVAHGYGLKFHTYCKPPSAEPDKFVTASTQTELTGEMIESLMSSTLCSTPKAKANMRELSFATLSPVASPSDKNDPT
FNLSSFETDMDDTDTDYEYDSEEEEEGNGSQFYIVHRSKLLERFQTCECGQPLAVWNMKSTGSMLAIEYECSSCSNRGTW
HSQPKIGSMAAGNLLIPAAILFTGGTYKKFADICDTLRLQKFSESHYNNVQRTYLLPAVNDYYLNEQQLILRRFQATAEE
EAQQVTLLGDGRCDSPGHCAKYCSYTLMEEKTQFILDFQLAQVTETGTSQAMERHAFEKSLEFVRDNGIDVECIVTDRHR
GIGASLKQRNNRHINHQYDVFHMAKSIQKKLSKSAKRKANRALGPWIKFIKNHLWYSSSTCEGDDVLLQEKWLSLIDHIA
NRHTFRKNQLFKKCAHHRLTPDEKENITWLRPGSAPHRAMREIVSNKTFVKDMAHLTGFKHTGVLEVYHNMLTKYTPKRL
HFPYLSMRARLQLSVLDHNNNVFREQAKTLEGDPRWSVVYPKRTSLWVARKLFEAKTYEYRQQLMEEVVRRKESGQWKYG
QHVLPDPEMPANIAPVERGSKQEAVDAYRTRFRPR
>Kolobok-14_HM_tp#DNA/Kolobok-Hydra 373-2214  [Hydra magnipapillata]
MAKNKSFKNRKVKRVFQGNRYTKKTVEVFLQQPDKDTNNDGINILPCASSTKLNISIDKADQPLTKHDDFFFFFHFPMFK
DLICSIGSCGECNSKDIALEYLDEKAKGFSIQFCIKCATCEWTYFFNSSRAFSIPDRDTRGVKSQEINVRTVMAFREIGQ
GHEAMKIFASILNMPPPMSLFSYNEINSDLLKFYEAASCDSMKDAVTEIRKRDFPNAAENDIVDIQIGIDGSWQKRGHSS
LNGVCTAVAKANRKVVDYQVFSKFCRGCALWQSKRNKSGYGKFLKTHVCDLNHFKSSGAMESAGALSFFTESLAKYNVRY
SHYIGDGDTESYTNVVKAKPYGEDLVPVKIECVGHVQKRLGTRLRQMRCDLKGKKLEDGKIISGKGRLTDKIINKMQNFY
GMSIRQNTLEAWSGDRTIALYNMKKSVLAVLWHCSNISNSEERHQFCPRTKESWCKYWQNDKNYKPSINLPLAIKSILKD
TFLALRSDDLLSSCLDGATQNPNEAFNQIIWKKCPKNIFVTKKVLDLGVASAVINYNDGLRGFTRIFDYLQLLPGSFMIQ
GSWKKDVSRVKNTIKNSTPKQKRARRKRRCIRKGYIDKEKEKEGVDSYITGNF
>Kolobok-1_DR_p2#DNA/Kolobok-T2 6026-5394 (2 introns) [Danio rerio]
MSERNTIQPYIYDTDSDTDQAESTVEESIIRIRYVTMHAPSVICLIKFANVMRYVKHRQDIKISTKINFALGDTAGKFPV
YVNVAALKTSNEIINSITVSCNKVRRRMDQLEMQPSCMTEHPGMDPVCFNIYSLQNASNIYKADYGPLRLRGVQK
>Kolobok-1_TV_tp#DNA/Kolobok-T2 338-1540  [Trichomonas vaginalis]
MLGACIMTGMPYTKGARFLSLCGTKPPVKSGVMRQQRFCDDKIRRLKSISLMLSRKSFSGYLSIDARWTHRRNSPSCTVT
ALDAVTKRVLACVNINHIGGNRQHAQYSGASNNMESAGTRIILKQLKKYNILKDVKEIIKDRDNKSVSVFKEFGVSHLER
FDPGHVSKNISKDFTKFSASHKTVEVFNDKTQKIEKIERPFWGLNASLSMWLWSCFAEENIDKRTKMWENCVYHYVGNHS
FCEPHNYKCFEWQKGVNSIQLQFMLYDWVHKWTPIVSKVSSIGSTCMNEAFNSKIACYLDKSRAWKNINIRVNVAILEWN
DPEHFLGDIQKALHLPPLPEDCVKSFEENCYSKMILKQKTVTKGSKKQNKYKKSIQSVPGGDYQVFKSEWESEDEDIDDF
D
>Kolobok-1_NV_tp#DNA/Kolobok-T2 [Nematostella vectensis]
MGAATHTRSIAERCLSTWQELRKASVYASDSAFASHLLSLELRRRERFTKTTTGGPKQKAAAIREPQTSTPVGKHHNRMA
DPEISLSEAGSDQGDNIVDITGSTICRLGYSIVDGEVVVDQEQEAEESEESYSSQSDDDLDESIKTALELLNTDLDMSDD
EKIATPAQQPETPKDTPSMVPVPEIATPQQPETIQPETPKDIPSMAPVPEIATSQQPETIQPDEPEQPGIHLKPECFLRE
KQINFFREELRMVQSTKVLCSLDLLADEFRKRCGQPGCTEKPTVKHVINGVGATFISVCSMGHQGRFSTTEFDGNGMSVN
NLQVAAALLLSGNNFAKIEKFSKFLGLSFISASTFYRVQRLYAIPTINEWWEWMRETIINTLQEQDVVLAGDGQCDSPGF
SAKNLCYFLMEIVTGYILEVEIMDKRHVNMKSATMERKALDNALSRVKKVLSVTEVCTDASSSIKKMIAEEFKGIFHSLD
VWHKAKSIRKCLLKVSNTRENGKVGKWTDHIIRHFWHCCSVCGEGTSTDEEALERLKNQWISLLHHVCNTHEWPTGKCHH
GDLPDEHELPWFDRRDKDFQALQKVILEPSLLDSFKSYVRFRHTGALECANSLSLAYAPKRCAFSYEAYKARKQLSAIDW
NFHQGREKAVNDKGEQMVSRKYNRRTKEWNLRIIKVGKTYDYIPMLMAMIIRKRFTDIDGITRHVSLAEDDPARIQPTLA
MAKPVSSRELFQAHQSRFRPPSTENE
>hAT-4C_AP_tp#DNA/hAT-hATm 862-3110 via genewise with HAT-10_SM, 1 intron (1388:1464) and 1 stopcodon [Acyrthosiphon pisum]
RQKIFIVGVMKNxILGSKLPSKKDVLSVLFFNMRMVKLTLQDSISLVIDECLIFWKKARIPTRDRCHCLKQLKKLYEELR
NLEKSKNRNSELCRQREHTFEDNLNDLFDIAHAFAMDMIKINEDKEFLNFQRQKGRPGCMLSTDVKLAGIEKRKHNREKK
YIDVQEKSCSSKSEEVEFNSTSSSEDVESITETESSRSPMPCPLQMKRARLEILTPRLSAVLDKCKISDRDAVHLLTACV
EATSLNPLDFVINRTSIRLSRQRFRELNAFRIKYNFFDLNLKFITIHWDSKILLDITGKTKVDRLPIIATAPNTEQLLGV
PELSAGTGYEVSSAVYDTLEDWSLLDRVQAFVFDTTASNTGRLNGACVLLEHKLGRNILYLACRHHVFEIILQSVFVGSK
FAPSSGPDIPLFKRFKNQWETIDLTQFSIWSMDVKTSNVLNDVSQQILIFAHKKLRDDFPRDDYKEFLELVVIFLGDVPP
GGIKFRQPGPYHLARWMAKGIYCLKIMLFQKQFKLSVGEKKALQTICCFIVKCYAESWFTAPDAVQAPLNDFIFIKKLNS
YKKDDKVIAEIALNKFVNHLWYLNEECAAFSLFDDRINVNQKRNMVKKILEEDKEKEKEVQKKLYLKSEEVSNFVNNELP
TSLLSAKSMVMFKRFDLSTNFLKIDPSEWNSQNDYIQGQQTIRSLKVVNDTAERGVKLMEEFNDKITKDEDQKQFLLKVS
CLYK
>HAT5-3_NV#DNA/hAT-hAT5 710-3118 [Nematostella vectensis]
MSKRTVFNNLWLQDPLFPWVAQAQESTKARCKMCSVTFELGNMGKQALISHAKGKKHLRRVAPSTQQVSLNSFVTVQKQE
SEQNSSAAERTMTVPPPPVDLSQVASSSDSSKGTIKKYVTKDETLKAEVLWAIKVLMSHYSCNSSAGTDKLFSNMFPDSV
IAKQFQCGATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISFDESLNKVIQKEQMDLIVRFWDVQKNKVVSRYIDSQFL
GHTRAADLLQSFKLGLQKLNPANLVQVSMDGPNVNWKFLEDLLEDREQTDPDLPKLINIGACGLHVVHGAFKYGATATGW
RLDKLLRSLWYTFSDSPAKREDYEAISGSSMWPLRFCGTRWLEDLPVAERAVAIWPNIKKYVDEVSKLPKSKIPTSQSFK
NLQAFVQDPLIVAKLEFFISIARILGPFLKKFQTDQPMVPFLTQDVQTILEAILSKFVKKSVLQEATTCAKLANIDVSKS
DNLLPPRKVDVGFAAKMSVHKMESTKQATPLQILEFQNNCLEFLKQLSSKVMDRSPLKYKMARNLVSLNPIYMASNPEAA
TTRFSNVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKALDVFLAEYFHQKPQYADLWQTVKMLLI
LSHGQSCVERGFSDNKDIVSNNMHQDTLVGFRRAHSGVKSLECPIEDSITTELLTSCKYASNRYRQSLAEKKSIEAKTHK
ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRVKSKEKRKEIEKEEQNIDLLQKKLK
SF
>HAT-8_SM#DNA/hAT-hATm 508-2772 [Schmidtea mediterranea]
MTTATRSSAAVWLVGKGTKLLSSSRLSTNGDVLRCLLFHHQEEHLNVSESIHRTITELLEIWKKARIPTQRVDSGERKLR
KLYDVYQLLKKNRTTSLESCRIKEQSFKDDLQKLFDIAPRDVMEIMTNVEDKQFLAMQRIDVNSSSMAGVDRKLLEKEAR
KRAREQASDRRKLNEAEKSQQLEAHGDLAEALSSTPSISEGSDSNTGDDTDTDFLPSSVDEAQSIPKTKRRKSAKNIISS
PEVAGALDRVNLPDRGAMFVVASVAKALGHPLEDLVLSRSTIRRSRMATRKLLTEADKDSFSIECPLLLHWDGKLLPDIA
GAEETVDRIAVIVTGNGIEKLLAVPKIGRGTGNEQAAACITVLDEWKLRDVVQGLVFDTTSSNTGIHKGACVLIEEALGR
ELVNIGCRHHVLEVVLSSVFTVLFGGTGGPEVGLFKRFKKKWPYIKQNDYSPAKDELFNSATEILRKEMVTFYTNAITHQ
QPREDYLELLRLCLVFLGGGSAGTDITFRAPGAMHHARWMAKAIYSLKMVLFQGQMTLTARELKGLTELALFVALVYGRF
WHEAPLASHAPLNDAQMLRLLQTYPNRTVADAAFSALCRHLWFFSEHLVGLAFFDDRVESHVKKAMVANLQLPKTRSALH
RVDSSDADFNNLETFVTERTNRLFELLSATGVEESRSFLLKEPEAWEADASYQKLYERVKMMKVVNDSAERGIALIEKYN
QSLTKDEDQKQFLLRFVQNHRQQFPSSSKAELAT
>HATw-1_BF#DNA/hAT-hATw 1310-4780 [Branchiostoma floridae]
MSSDGGEESEEAAGVLAKLCITKQMLEGDHSHLPRVKPAEFTNGLVLELRKLEGTANSTVVSQLMHLAPTAVKEDIEKCN
PKSLQNRVKDMFKKYQKHSKNDRSHLEDFLKAQFRLPVPRPPPAQDEQSASSSTMFKLQQERKEKKACKRKIAQLEKERE
DVELKYERLIQDYFSTVTQLQVNEENFRQTIQAKSNHVSELTAELASYNKANETLSAKLDSLQTQMSRCNTGKVRNLNKK
VKRKDDKLKLQDELIKEKDQTIKELEAAASSSSEKLEDSTAHLQLSTIKKKVKSMQDSKRKLQQKLEKAQTDKQQLQADL
EATVEVLHKKIKDLQKENTDLQQIQALMEKDEVKFFEDGKYSDEIREVVMDLLTRGVSMNKVPSVITTVLSKLAGKTVDQ
LPSKALMSRLLVEADCLATLQVGEAIISGAAEVEKGNCLHQDGTSKFHKKYLTFDATLPSGKTLTMSMSEVPSGDAAGIT
EAFTERCRELAAALCDEGEDVAQKTAQIITSFTSTMSDRGATNPLFNSQLQALRSELLPAVHENWDALADDVKGEMANVC
NYFCKMHLLVNFATEANSTLKLFEDAVAEGSNPLAYTQQGESGAARLIRTACTAFTEHGSEKSGAPHYFNTHISHNHGED
TNYMVTFRGNRFNILFYNAAAVFHHHKHITSFVKSWPDPNGLLKAVKADATQKVYLAGVRALGIIDKTVTGPFFRLLGME
KSILGMNKHLHQMQLSLERWAKDASTLLGGEPLFNEEVVKRNKDVLFESLFAPSEDEELDMLTQQALEVVCAAILILLER
QAEEQLPGGKYWQPSEAEQQKSQHVPTTNVVSERDFAVLDNLIRSKPNASSLSCEAYIMWLNNQTSTWLDNLDAEEKERH
MAYARTHAASIHAKFLEKKQKIKEQRLEALLKKQKEKEDKKQKARQRKVALTEKVLKMGGVWKTAEEVDERVGSLNREQE
KLEAVKNQLQFHKKVLNSEGDKELFQMTITRPGRGRHVFSSSEKISHLKEVISKNVTHSTDINSESEEEDEEREYVTLKE
PEARTVQGIHETLNKKRQAETEKREVNRQKLSLPDYLKDPSKLVGCKIRQKFNTKDQDGNKVQTWYTGTVTEMMDGAQDP
KDTEYLIVYDDENEKDEVYNLLSDLEKGELIVLNSD
>HATm-7_HM#DNA/hAT-hATm 634-2952  [Hydra magnipapillata]
MSSAAVTTRKKSTCPIFGSPADLRANVLPTYKHVMLSYLLSMQKMRVETGGKQPSLKEISENLAHKIENLWGKASIPTVS
HKRIVKMFLDYNQKYRNIMKSVNKTKHTDKLKSKIITFQKHAENTLFDVAACKCLDFSKCICEKAKKVPEKEHEFLSDQR
FMRIMYMEGLDIQATLRLRRKEARKNRVNSPLPSNPSKQPCAITGIEAQSTLSSRIHNSSFYSISQDSDSDDTVIWNTDS
ESDADYLDTAEGHKQKRNRKDKTEQMRSPLLSLAQACDRVGVSSRGAAFIACAVLEDINIISKGDQSKVIDKNKIQRERK
KNRLKMQHLDHENIQMLEGLYFDGRKDTTFVIDTNKGKNIRKTIKEEHVVLVQEPGSKYLGHVETASGHGYSIKTSIKTF
LTQNNIDTSKLVAMGCDGTVVNTGFRNGVIALFELELKRPVHWFICQIHANELPLRHLIQNLDGPTSGPNGWSGPIGREI
KLCDTLPIVNYIPVSVTLPKIDKKSLSSDQKYLLDICKAISTGYCPNALANRNPGKLNHARWVTTANRILRYYVGCSEPS
HKLREIVEFVIRVYCQMWFNIRYDPSCTEGARHLWLTINLSRYASSEIKSIIDPVIQRNAFFAHPENMLLAMISDTRPNV
RKFALKQIMKARSIKTNKVRKFSIPEINFEATDYIDLIDWIKCELSEPPITTHISDENLIEMLTNGNLPDVQHFPCHTQG
VERCIKLVTEASDQVCGLASRDGFIRARLASRKKMPIFNTKRQFETETNESDS
>OposCharlie3_tp#DNA/hAT-Charlie 1639-3552 [Didelphidae]
MSTAKKAKTDSGRSFQESWTESFGVIEHDGKALCILCNESVVCRASSVRRHFDTNHKSVAKLGETERKEFLERKLRKYHS
QYLSFCNYLSRTNHLTAASFQISLCIAKHGKPLSDGDIIKTAMLSGSNSLFHDFPNKDKIIQRISEMPLSRNTVKDRVQR
MASDVSQQLTTDLQKAACYSMCLDESTDINNHARLAVILRYAVGDIMREELVKLVSLPERTRGIDIYNAVTEVFWSQDIR
PEKVVSITSDGAPSMVGATSGFIQFFVKETKHQVIQFHCIIHQEALCARESSKKFDDVLKDVTKMVNYIMARALNFRQFQ
ALLEEVQAQYNCLLTYNNVRWLSRGRILERFVACLDEIRLFMNEKGQEYPQLNDMAWLTNLMFFTDFTLHFNVLNKQLQG
VGRTAERMFCDIKTFERKLQVFERDLESGQLKYFPNLKIHLENSTTFADNPTSHQEIYKEFSSIVAAAKVNFSNRFLQFR
KMETTLRFLTSPDKAKFEELDLSCLHWLDLGNLEMELLEFQESSIWKNKFYDLRETLEKIEGMTKDSTVSSENEILKVWN
SLPNNFKSMKALGIAFLTLFGSSYACEQLFSSLNYIKSDTRNRLTDDLSAACVALKLTKYEPXLDKLSACIQQQKSH
>hAT-2-h_SM_tp#DNA/hAT-Charlie 74-1843 via tfasty with OposCharlie1_tp, 2 frameshifts and 4 stopcodons. Poor quality sequence. Likely well over 90% identical to OposCharlie1_tp [Schmidtea mediterranea]
MQSRKKKIDSQSTIFxEQWTYDYFFMQYKERDMCLIYQNIVSVFKExNLRRHYQSQHKDKYDCLVGEEKKNKILKLKNNL
KTQQNTFVNQNQLNISSLRASFxVAKLIACTYKPFVESKFVKECLPSVAKEMLPENPNLFSKVSLSGPTVTRRIEEMGNN
LHQHLQNSGEKFSYFSLALDESNDVRDSAQFLIFIHGTNDYFEITEELAALQSIKRTTTREDIYEMVCKTVNNLELNxTK
LASMTTDGSPSMVGSNKGVIAHINQEMGKNNHTHPITTHCLIHQQALCSKSLKWNSVMKTVVSCVNFIRTNALNHRQFQE
FLSELNVANKDVLYHTEVSWLSQGRVFKRFYELLPQIKDFLPSKNKEIPELNDAEWKWHLAFLTDVTELLNSFNVQLQTK
GKLICDIQSYMKAFAVKLXILIKHVKEENFSHNSNLPITQNLLAEKPLVSFPNKKCVDSLEKLQKEIQLRFKELSLHEQD
IQLFRNPFSIDIKNVDTIYQMELAELQNCDSLKDASSLSSLPNFYASLPSEKYPNLRNHALKMVTIFSSTKNCEQTFYRM
KHLKSLTRYILMDTQLHYFIRLAVTNMKPD
>HAT6_CI#DNA/hAT-Charlie 281-2095 [Ciona intestinalis]
MAEKKRKLVSENRQFLEKWQHSYFFVQKDQACICLVCKQAIPVLKEYNLKRHYETKHLEKFKHLVGDDRIAKYKSLETSY
KSQKNMFKKMSSESEATVMASYVVSYNIARRSRPFIEGEFVRDCMLQVVELLCPEQRSKFANISLSNNTVTRRIEDIGND
IDLQMNELLENFTHFSIALDESTDLSDTAQLLIFIRGITDKFEVHEELLSLQSLKGQTRGVDIFDAICSAFCHHNVDWNK
LVGVTTDGAPSMVGKRSGCVALLKSKFNEITNKELITYHCIIHQEALVLKVLQMKNIMDVVIKSVNFIRSRGLNHRQFKS
FLESLNSEHEDVVYFTAVRWLSTGATLSRFFHLRQEIFEFCKEKNYDIPELQENEWLCDLAFLVDITAIMNSLNLKLQGK
GKLASSLIDDVRATERKLVLVRSQLLDENILNLSMCTKFADENPAARHLFFNTKYSETITRLLDEFSRRFDDFRSRSTEF
QLFRNPFQCAVETMPTKFQFELIELQENTTAKDKFKSEELLTFYQNLNNDTYPVLLTHAKEMACLFGSTYLCEQTFSVMN
INKSKLRTRLTDSHLGAVLRINCTKLKPRFTKIISQKSQLHKSK
>HAT-2_SM#DNA/hAT-Charlie 925-2874 [Schmidtea mediterranea]
MDKWLKIGTQCPENDKNDNTNNNDGPTPTKLRKSVDEDPNKNESSGTVATSKNIRQTMLSNKKLRKYQEEYIKYGFTFCV
VNGEERPLCVNCSDKLANESLKPAKLKRHLETKHKEFANKSENFFKRRAESMKNQTVFLKTYTTIPEKALRASLEVSYLI
GKNLKPHTIGESLILPSAIKMTSIMHGEKYGNDLKTIPISRDTVSRRISAISRNIESVLLNRIQNSPVFALQIDETTDIT
KMSQLIVYVKYVFEEDISEDFLCCKRLEGRTTGEKIFEIINRYFEENDLAWAHCVAICTDGAAALTGSNKGLKGLIIKIA
PHIVFNHCMIHRQALVAKDIDEELHKVLQDVVIVINYIKGNSLNSRLFSILCNEMGSEYETLLLHTEVRWLSRGKILRRI
FDLRNEVYNFLVEKKHILAQSFINEDWLGKLSYMVDIFEKLNDLNLSLQGESTTILTLSSKIEAFKNKLILWKGELNKNN
TDMFPCFSEFTNENNIDFMLFKNIISHHLIKLGENFTKRFEKFPDKELGWIRDPFSFDIINSNIPLNEKEQLIDISSDET
LRIQFRSLTCQKFWLSTENKYADLKKKAINILIQFASTYSCESGFSKLVAIKTKYRSRLDPEDDLRIAISHIVPNMEAIM
SSLQAQTSH
>OposCharlie1_tp#DNA/hAT-Charlie 1312-3120 Near identical proteins were encoded by transposons in Anolis (hAT-2_AC), Echinops (hAT-2_ET), Myotis (hAT-2_ML), Microcebus (hAT-2_MM), Otolemur (hAT-2_OG), and Tarsius (hAT-2_TS) [Monodelphis]
MTSRKRKIDSECRIFKEQWTYDYFFMQYKERAVCLICQNIVSVFKEYNLRRHYQTQHKDKYDCLVGDVRKDKILKLKNTL
TTQQNTFVKQKQLNISSLRASFQVAKLIACTGRPFVEGEFVKECLLSVAKEMCPEKADLFSTVSLSGSTITRRIEEMGDN
LHQHLQNSARKLSYFSLALDESNDVRDSAQLLIFIRGTNDNFEVTEELAALQSIKGTTTGEDIYEKVSQTVKDLELDWAK
LASVTTDGAPSMVGSKKGVIARINQEMDKRNHSHPIAIHCLIHQQALLCSKSLKWDSVMKIVVSCVNFIRANALNHRQFQ
EFLSELNVAYEDVLYHTEVHWLSRGRVLRHFYDLLPQITAFMLSKNKEVPELNDAEWKWHLAFLTDVTELLNSFNVQLQG
KGKLICDMQSHVKAFEVKLGLLIKQVKEENFCHLPLTQNLLAEKPLIAFPKETCVDSLEKLQKEFQFRFKELHLHEQDIQ
LFRNPFSIDIENVDTIYQMELAELQNCDSLKDAFKSSSLPNFYASLPSETYPNLRNHALKMATIFGSTYVCEQTFSRMKH
LKSPTRSRLTDAHLHHLLRLAVTNMEPDIDHLISQKQAHSSH
>hAT-16_Crp_tp#DNA/hAT-Charlie 1334-3190 (Region from 425-1333 maybe accidentally ORF due to GC-richness)[Crocodylidae]
MSAPKKAKLDVRSFQPSWTDKFGFIQKKDHAVCALCCESVVCRTSSVQRHFQMKHEQTFLDEADRIESIKKAVAGYTKQI
SVFKRLSVSKNQATEGSYKIAQCIAKNGKPFTDGEYIKEAFLSSLEVLFNDLPNKDTILSRIKELPVSARTVERRVSEMA
ENISEKQTTALKDTVVFSVALDESVDINDVPRLAAVARYCASDEIREELCCLKPLHGTTKGEDIVKMFVNHFEERGVNIR
KIFCVTTDGAPAMVGKQKGFVKLLEDQIGHPTVKFHCIIHQENLCAKVSNSELSNVMNTVVRIVNFLVARSALTHRQFQA
PLEEMDSAYNDIPLHSNVRWLSCGKVLMRFVNCFDAIKAFLSEKGQSYPELDDDKWLCKLMFLADITAHLNELNLRLQGA
GQTVLDLYEIWKAFLAKLAVFSQDIRTSAFCYFQHIKELSTRCTVSVDEIGMYMQELESEFSDRFQDFQRFGPMFSFLIK
PENFNESDLDLSVFQWMGVEDLEMQLIELRSSELWASKFRDLQSALEATERDHGASILTCWTSLPVKFNSLKKIVFAMLS
AFGSTYLCEQVFSHMKAVLCPSWSQLTTDHSEACVQLKVSKYELDIGKLSKEKQGQGSH
>HATw-2_HM#DNA/hAT-hATw 545-3851 via tfasty with hATw-3_HM, 1 frameshift.  [Hydra magnipapillata]
MQNRDLYLWYQSLEEKNLSNVCTVFRQRFSSNFQITDNDLSLFSKIKRVIQKSRLLTKKSKEEFMLLNFIPPISETNIQT
FLLSTKIIPKKEKNLVKDLDHLKIENKTLKRKVKAVDNLKENYKNCYKQLNNLESGNKKLKSVIKTSNAEKLEFVRQSKQ
CKALYTTTNERLSALEKKFTTLKLKNKTNRIRNLNKKILYRDIKLEKQEKEIDALKAQFVSESQTLNKEFNDLNQMLESS
NTKVDILSQEKRNLQKKLCRLKNNLNKTKESISASSIEDLTFLQSEVKELGAKVESLNKENIYLNGLLKLLEDEEIVTFE
RGRYSNDIREVIMELLSLNVSMNKVNDVIKIVLKKLAKKTVSKLPSVDTISRFMSEALILAQIQVSEEMLDNVEKDTGNC
LHGDGTTKYHRHYQNFQLTSKSGKMLSFGLSELASGDAGSTLSSLTETLDDICDVLDTKDKEKDFAKLICSFKTTMSDLG
SVNPLFNSKFKEMRELLLPKVIEHWDYLTIKQKNEFKDMSNFFCKLHLLTNFATETDKVLSSFEKIALSDDHKDIFAFKT
FESGAARLIRTACKAFHKRGSNELGVAGYFNSFLIGKGVDKCMFAPFIGNRFNILFYNGAALYYHSESIKEFLSQWPNPN
NLLKAVNEDISNLLFLAESRALGIFDKLITGPLWRLIEENKNILSMNKFLFCLKMKLSDLCKDASPMLNQTPVFDPRDVK
IHKDKLYEKLFEETGNIEFDVLVQQSLEIISHAFLIILERQAIDQLPGGKYWNSDDRIQKAAENVPTTNKASESDFAILD
LLIRTKPNAKIQTIQAYTMWYRNKTLDWLDAKSEEERYILIGKASNSVEKMKLKYKERQVELISKKSSILIVKQQLKADT
EKKALLKKANIVNELIQLKSQVWLTADEAKDKSSKIENDTLRKQVIRVQLDFYRYVMGAKCLLKLFYKTKVSGNKRIDLS
SGELMENLLTVIGNCNLPPPEKTTNTLKEKNQRNDLIKKQKEKLFTTLKDSRMSHLAKQKKVLFLPALLDDPFSLVGRVI
LHKIKEVDEEEYFWCKADVLKIGKVGKKIKQTLYDVIYESEPGSIYTFPLLSDFDKGDMILL
>47203812_Tni_tp#DNA/hAT-Tip100 42-2039 (-Gulliver?) Closely related to hAT-31_SM [Tetraodon nigroviridis]
MAKRTGSGTSPHQAKVKKKCDSFKMEWLSEYVQTEEKTVKLGEIFSFSSEKGLLCKTCCEAKIASEFSEGKMWTEWKLDY
LKHHIQHKSHLKAVGIVRRCKMGMGIGTLLRESTRDREKRNELSLVKKSNPEQVKVLIDDILLAININASMLSVQQIHDH
MAKYVSIPESWRSKNDAFEFVNSINQIVQNETMCKVKNAPWHTLIVDESTDITVHKMFVLYVKYREENNVNHKTVFGGIV
QLTACTAQDIVQAITQFYTNHKLDMQRMVMLTSDGASVMLGKHNGVAAFLKQQIPHLTEQHCVAHREDLGIDDAWKDVSL
MRDVETFLRTVYSTFSRSTVKRGKLEELAKILDEDSLSFRPLNEVRWLSRDQAVNAVLRNYTILEEYCKRESSDNRDPVA
NYCHKKLTDSKFKFTLGALGDVLGELAHLCLSFQRRNLTVMEGHCFARAKIEKLRSQYLTGEKDIKWSDCVKEAMRASSA
DGRDTGEIICFIRNLCDHLDARFPEDELKEWSALDIEALSSDISFEYGAADVATLAKKYEAILHQPHSVEAINGEYAEFK
YIMRQKLKQGSISTFSDMVAATLKCEELKHVSQLVDICATFQASSADCERGFSLMNQIKTASRNCLEVDHLDQLMRIKSK
LQADEAIDLDNVYNHWRREKDRREN
>34913676_Osa#DNA/hAT-Tip100 gi|34913676|ref|NP_918185.1| putative transposase [Oryza sativa]
MKKKSIDLKTLWDRHSKSRKVGLGSGSGSTTQPVRIDSEVAVPSVQPITDANESPVQIQITAVEVVPEVAASDAARDVTE
PETEVASNDPDIATAVTQQEQPSTWSPIRDWSPIRDGDDEETEYDSSDEAIYDIDLLCHDPGRRIAIKNYDVNERNSVIR
GYIALGPCQPRSHNFPIRKIGGKPRRFLPSWYDEFKWLEYSVEQDAAFCFICYLFKHKINNSGGDAFVNRGFRNWHMRKR
IAKHVGGMTSFHNVAQDKYNHFLAPKTNIVESFAATNEQDKARYMARLTYSMKCLKFLLRQGLAARGHYESEKSLNKGNF
LEMLSMLAENFEEVGKVVLNNAPKNCKLTAPEIQKQIANCCAKETTKLIMEDLGDEYFAILADESSDVYQKEQLALCLRY
VDKKGRVVERFLGVVHVENTTSLTLKAAIESLLMEHSLSLSKVRGQGYDGASNMKGHANGLKKLIMDECPSAYYVHCFAH
QLQLTLVAVAKENPDCVWFFEQLRFLLNLLGNSCKKTEMLRVAQAQRIVEELDLGDIETGKGLNQEMGLGRPADTRWGSH
YKTVMHVLSLYPSIQKVLIMVGKDRSFGAECANAQTVLTIFQSFEFVFMAHLMQTVLGFTSDLNHALQKRDQDIVNAVGL
ILLTKFQLQQLREDPGWDDFLQEVQSFCVKHKIKIPDMDSFYRPVGRDRRFFIKIKNMHRFHVDMFLSVIDRQLQELNER
FDEVNTDLLLCMAAFSPIDNFASWDKDKLIKLARFYPNDFSSTEMNHLPSALKLFLTEMRIDERFRKVKNLANLSIMIVE
TKLHNRHEIISKLLKLVLVLPVATASVERIFSAMNYVKNKLRNRMGDQYLNDCLVTFIEREMFLKVKECDIINRFQAMKE
RRIKATLPSHEGTEIEN
>50762314_Gga#DNA/hAT-Tip100 gi|50762314|ref|XP_429220.1| PREDICTED: similar to KPL2 protein, partial [Gallus gallus]
MFAREQREKRRRKMLMEQLIAHEAEEEIYQEEQLVYRLMRQSQQERRIAVQLMHVRHEKEVLKQNRIFREKQYEERRLKE
FQEALDREAVLSVDTLVQEAIQAFLNNEMKTEHSLISQEAESSAKQYKLSVRAQLGAASQKLLKKGKSIPDELLVDILLE
AIKQTPPEKGWILDGFPTTINQARLFEKACTGIDPDETEAKYVNCGKLSLVTNPRTPSKPPVTLPAFDVSILLDISDTTV
LKRVASLMYTWPKLENWFSDHQNTLVKVNAEMEESTVCKTVKEILIEEIYKKQNRRYVQEKSPEEKALPVTPQDLLSPVS
VTPLIKPGTDEWIYVDEPLPKEIPDFLVPYWEMVENVYVNTIKTVLRCLRDEQYSVIYYLADIRKNFQDYLKHPDHKQEF
VSQWQSDFNSIPDDLREDEETKAELHQRVTDLRDLLWDICDKRREEAEQERTDIMNDGWLRDHKGIAINHFFSLMQVEVD
RFQDTKRLLHDYYRAMEGKIPTEDRQSFTRLPLLDIIDKEQQEDQNESRRIPLVSYKLPSPETNITKSKSKGNLLKSVKD
ENSSENVVVALGKDENVIRDTWQTAVTAVSDMVRAEIQSKEVKEEGEKQTEVKEDTKSSQTISSKSTGKDAKDTKKSPKS
PTKTKGPRSTASAAEDSPVPLTAEELKKQKLILKIQQEYFAALKHEEKATKTRLKLIKAKALAYVEELTMKAEEAYKDME
KWLGESVEKLIEVGRHHIESSSKIQYEMNLEETDFFISSDVKVIPDPVPPPQVPLIETSESSTLTISQLNTFHKHFLQVA
PKVSAEQTLKSMNSITIGRVESTFRTCHAIAKSVQPFTDLDWIYKSDDVKGTDIGSLFRNYKSARMFKHFMAEAERRALK
EELENCKFFSLISDEFTDSISKSAAVVYVHFANEGKVHCQIVGVQPVQKNDASTIKSAIEETFQINLQLSLASQDWSRKL
VGFGSEETDVMTGQNNGVANLMREIQPCVQSVHCFAHRLRLAYKGALENIQLYSLTNGLRSMYYFYHNSTLNKKNLKAIY
EAIKLHPAIPSCTGGSQWFSRLQTALQILLKGHPAFVLHLDK
>hAT2_SB_tp#DNA/hAT-Tip100 641-3129 via genewise with 34894392_Osa, 1 intron (1579:1667) [Sorghum bicolor]
MDDSLGDGYDSDEFEQAVAAVEEEMENSMAGAQVEEEIETDEEGIITEFNPDHIITDPGLRIPIDRFSIDIRSEVRRAFI
DKGPTQPIGYNFPKTSNKRCFQKNWFKEHPWLEYSVEKDRAYCFYCYLFKHDRMDDKFGYDVFTTLGFNNWKNAYLSLPK
HDGxIHNQCRTAYEDFKNQRTSVKHKVDRYTKDALIKYETRLDTSLGIVSLLTLQGEPFRGHDESLTSLNKGNFLEFLDW
YKERNExVRLAFDETCPKNAKMTSPTIQKELAECCAIEVTKAIKEEMAGCLFSILIDESRDISVKEQMAVVVRFxNKKGK
VIERFLGIKHVKETTSEALKTAIVEVLGEHGLHIANLRGQGYDGASNMRGEFNGLQKLIRDENPYAFYVHCFAHQLQLVV
VSISRCCSSIEDFFEYVALIVNNAxSSCKRKDLLLDKQREILLGKLGSGEISSGRGKNQATSLARPGDTRWGSHYKTLLR
IESMWDSVIEVLQIVHEDERNPSRAGGLVQIMExFSFVFIMKMMLQIxRITNELSLVLQRKDQNIVQAMSLVIDVKTRLM
NLRNDGWEPLLxEATKFCSENDIPIPNMNESxTRFxRSRKGGKNDITADHYFRVDTFYAAIDAITTEFDHRFNEVSSELL
VCFSCLDPRDSFSKFDVDKxARLTEIYSDDFSYSEKKGIKDQxETFILHVRRIEEFRDCHDLASLAAKMVELERHTLFPS
VYRLIESALILPVATAxVERVFSAMKIIKTELRNKMSDAWLNDLMVCYIEREIFKGIDLEKIKKTFQNKKDRQMQLPRRN
>116317825_Osa_tp#DNA/hAT-Tip100 gi|116317825|emb|CAH65861.1| OSIGBa0126J24.6 [Oryza sativa (indica cultivar-group)]
MKRKSDIASMFQRYEAKKKATSPSPLSAANSEEQIEKQEDADAAGPEEQIEEHEGGSNQETEERVIEQNVALAPIPPRPP
PVPEKEPIYDFSRLPFDPGERQPISSYPVNDQDAVRRSYIMKGPYQPYAHAFESRNIGNKPRQFSPLWFYKYPWIEYSVK
KETAFCFVCYLFGKGRSKTSAFVKGGWNNWNRTDALDLHVGGVASAHNAAQERYNLFITPHGAIDDKIVKVDNEERRLYK
IRLTYSLRCLRFLLQQGLAFRGTTKVKSLTNRGNFIELLKWLAENNEEVDKFVLKNAPGNCTLTSPDIQKEIIQCCAMET
RDQILEEIGDNYYTILADESSDVSHKEQLALCLRYVDKSGRPCERFLGIVQVDDTTSSSLKEAIESLLTRHGLTMTQIRG
QGYDGASNMKGEIKGLKTLVMKESPSAYYVHCFAHQLQLVLVAVAKENGDCVWFYDRVSLLLNIVGSSCKRHGMLRHQQY
ENVMKALECGILESGSGLNQEMGLPRPGDTRWGSHYKTVVNLIAMYPTIRDVLIALGRDTSARGDWPKIHIMVGVLESFD
FIFYAHLMLDILGHTNELSECLQRKDQDILNAMSQVRLAKSKMQQMRSERWDSFLQRVTVFCNKYGIQVPAMEQNYVPYG
RSARFAPDQTNDDHFRREVYIGVIDKISQELDNRFDEVNMELLTCMAALNPADSFASFEANKVHRLAEFYPDEFSSSELV
RLDLQLERFIDDMRKDQMFKGLNSLVDLSVKLVETKRDKVYNWVYVLIQLVLLLPVATASVERIFSAMTFIKK
>15222347_Ath#DNA/hAT-Tip100 gi|15222347|ref|NP_174954.1| hypothetical protein  [Arabidopsis thaliana]
MKEIRYLVRQRLPFRGHDESDESANRGNFLELVKYTVGQNEVISKVVLENAPKNNQMVFDEMSEPLIPETRDPVPSSFLL
LDLILDYPVVWQQTVQSNVSDKEQMAVVFRFVDKHGTVKERFIGLIHVKETSSASLKCAIDSLFAKRGLSMKQLRGQGYD
GANNMKGEFNWLRSLILRENSSAYYIHCFAHQLQLVVVAVAKKQFEVGDFFDMISALLNVVGASCKGKDRIREEYLKEIE
EGINQGEIKTGKGLNQELSLQRPGNTRWGTHYTTLHRLAHLFSVIIKLLEFVEEEGTDSTKRRQANGLLKYFNTFDFAFY
LQLMLLLLGLTNSLSVALQKKDQDILNPMSLVKSTKQQLCKLRDDGWDSLVNEVFSFCKKHDIELVIMDGEFVNPRNPRK
RSNMTNFHHYQVECFYTILDMQIQEFNDRFDEVNTELLSCVASLSPIDSFHEFDQLKVLRLSEFYPQDFTHVDRRSLEHQ
LGLYIDNIREDERFAN
>Hoyak1_tp#DNA/hAT-hobo 529-2288 via genewise with Hobo_tp#DNA, 1 intron (1166:1221) [Drosophila yakuba]
IKEKLTSGMYSLIEKRGRSEVWQFFSKIKNDDGEELVNLVACKTCYTVLKFTGSTSNLVKHKCYLNNASKFRQGAPIEVN
QETKEEGISVVTEWVVKNCRPLKIIDDSGIKKFASFLINVGATYGGNVDVNKLLPHPTTLSRNISTIYSSHFGPIKSEIQ
TYKAFGYAITSDIWTDDYLKASYLSCTVHYIKEGVLVDRLMAMKSMKGLPSTGLNIRTKIEAILKDFGCDLVTNMIKAFS
DAENIYCVNHLLNNAVEKAIHAIPEMQSLVSNCSKLVKYFKKSGMNSTLGVSLKSFCPTRWNTVFYLLESVETNWIELTA
VLKEKNQTSRVEEININHLGTIVRLLETFENVSKKLEASKRPTIHLILPNLNKLIKTCQFDCNDTNIIRDLKFQLNSQLS
STVNPKLKKYHKIALFLFPPTNKLIQFSPTEKEAVINDCKILMNHFLQDSCILNNFETELAEDEFAEYLDVPKVETIQTK
VEAEIAGYSNINVAYTPDFNVLAWXNLNKQFFPLLHKVSCKIFCIPASSAASERAFISARNLITEKRCLIATNPENINKI
MFLHSNLS
>hAT-3_DT#DNA/hAT-hobo 597-2446 via tfasty with hAT1_DYa_tp, 1 frameshift. [Drosophila takahashii]
KQHAANIKCKLLNGQFKLSAKRGRSKVWETFSRIVDESGAELNDFVACNICKSVYKFEKSTSNLVKHRCYIMTSSRNRIH
PDVDVDTENKKKCTKLVTEWTVQNGRPFSIIADSGLKNLAQFFISVGANVGQNVNIDSLLPHPTSVSRNIGALYEFHFNE
IKKEIVHCKAFGYSITSDIWTDDFFKESYISLTMHYIKEGTLKNRLLAIKSMKGVSCTGKNYKICIIALVLILTKTVFLG
DKIRNKIESILVDFGCDLSVDAPIIVTDRGSNMKAAFSGLNTLNCVNHLVHNVVEKVVNQVPEMKEMVDRCSKIVKYFKK
SGQNSSLKSTLKSYCPTRWNTIYNLFQSVEINWMEITNILMEKNQISRMQNINLANLSALVSLLAPYENCSKILEGNSYP
TLHLTFPHINNLKKMSIVKENDVEIVKKCKLSLQNLLKTVVEDNLKNFHMVALFLFPPTNKLSQFLDCQKQKTIEECEKI
MMNIHLNSPVPEKECLESKPPIDSIFFDYYQPTQDTSILSRVSNEIVSYQNINIAYAEEFNVLQWWENNKEQFPLLYKTS
LKILAAPASSAASERAFSIAKNLISEKRSKIATSEDMVNKIMFLHSNIDAFNESLLK
>22327270_Ath#DNA/hAT-Tag1 gi|22327270|ref|NP_680299.1| hAT dimerisation domain-containing protein  [Arabidopsis thaliana]
MMRKFTGGRNLHRPAITRIATSFITLAQFHRLKDNLRKMVHSDEWNASKWTKEAGGMKIKSFFFQESFWKNVLHALKLGG
PLIQVLRMVDGERKPPMGYIYGAMDQAKETIMKSFTYKEENYKMAFEIIDRRWDIQLHRPLHAAGYYLNPEFHYGQPDDI
GYEEVLGGFLGCLGRLVPKIETQDKIITELDAFKKATGLFGIPMAIRLRTKMSPAEWWSAYGSSTPNLQNFAIKVLSLTC
SATGCERNWGVFQLLHTKRRNRLTQCRLNDMIFVKYNRALQRRYKRNDTFDPILLNEIDQCNEWLTGRMEENSSDTENDD
LVFENDDLTWAEVGEAAGANDPYYATRSTAASSRFEKGKGIASDSGGHGNSRASRKTPNSSRPMTLVDEDEEMEDDFLGA
EYEDTLLDKDDYEFDDSAGYNQIPSIPAPLGFGPPPSSTMSPYGTTMDAMYMHLPNAAMMYAHPYEQLRNGPLQVNNIFP
SPSLR
>hAT-11_SBi_tp#DNA/hAT-Tag1 890-3446 via genewise with 34914880_Osa, 2 introns (2691:2825, 2945:3050) [Sorghum bicolor]
VGLSSTASTANQVNDVVAEPTDPAWKHCTMPDVNKKNSLKCNYCNNIYNGGITRIKYHLGKVPGFGVAKCNKVPSDVQSS
MVQLLSKKLDIKQKKKQDKEDDRAEVDLSHSEGEEQSDGEGNSVIVLKKVSSKGTSSGGPMDKFCKLTPEEIVAARKGKS
GVENKVQSKLSTEKREEKRDRACEYICQFFYEAGIPHNTVSLPSFDLMLEAIGDFGRNLRGPTPYEMSGKFLQKRKRKVQ
ESLKSHQESWELHGCSIMTDAWTDKRGRGVMNLVVHSAYGIYFLDSVDCSAEKKDGRYIFDLVDRCIEEIGVQNVVQVVT
DNARANEAAASLLKAKHPSIFWTGCAAHTIDLMLEDIGKLPKVAATISKAKCLTVFLYAHTRVLDLMRKYLSRDLVRCGV
TRFATAYLNLKSLLENKKQILRLFREDELNELGYLKSVKGKKAHKIVTSDSFWRGVEAAVNYFEPLATVLRRMDSDVPSM
GFLYGYLVEAKNEIARRFNVDRKKYEEVFHFIDKRWDSKMKTPLHRAGYYLNPFYYYQNKVEIEDNESFRDGVITCITKL
VRDADTQDKIIEELQKFQDAEGSFGKEIAKRQCKNIHFDPAKWWLNHGSSAPNLRKLAARILSLTCSSSACERCWSFFEQ
VHTKKRNRLLHDRMRDLVYIKFNSKLKQKKDNKDKDPLEVHMVDALEDEDNEWITGIEPTEVDHDQEGETAAASQREETR
RGGQRNKKRKRFIHIPTATDDEDISVASSDGEDDNDMPSPSFPSSDSEAQSD
>Folyt1_Fox_tp#DNA/hAT-Tag1 wised  gi|3126916|gb|AAC16005.1| transposase The GenBank entry has an intron, but this "intron" is conserved at the protein level with other HAT transposases. There are at least two frameshifts in the Fusarium sequence data. [Fusarium oxysporum f. sp. lycopersici]
MPRAPGRPADHQVHREFITLASDASSGFKNSRVKCKHCGHEITKGTTRQKKHLLRHCPNYKRQQQSQQPQLTHHFPVVDK
TFKQMLDELAAIAIFADGRPFNLFESKRMRILLSKLNTAWQPPSRRRVQRLLAPTYSQYHNQVQAILDQAEHINVIFDAS
DNITSHRIINISIQVANGTAFYWKTFDTGQIQHTAEHYIDLLYPELEIICKGNFLRINSFCTDTDSVMRKAHVHLAARKE
FQHCFFSLCDSHGLQLLIKDILELPFFEEAFKNATLIVTFFKKSKLQLARLREAQKAAWGHHKAFLSAWVFQFFxxxLTA
RFSVITRWGSQFNALQSVLRCKEPLQAYARRPDVRAELASGSLELPSxxVLESVNNPHFWIRLETVLAIIKPVNSRQRAS
EADRAHIGHVIPRWLEIKAEWKALDESQQHQDVNFSELYSVWLNRMDKQTYDIHYAGFALRPDTVGTKLEEQLMMKVLQF
FKSAVNPADYINIVREFNHFRAQSGGRFAAGGLVYSKEWTPLDAWMLLDNQGSKLAALAVRIFGTIANSVPSERSFSAVN
FLHSKARNRLTPANADKLAFIYMNERVLERITQSQNQPLDHRNDHSTVVSWEDLAEDGWLTLEDTYMEIHCASNLEVDAV
VGEFTHQPASDGEETVVDTLEVEDGSESEGAGEKLT
>Harbinger1_TP_tp#DNA/PIF-Harbinger 143-1705 [Thalassiosira]
MALLNGLMEADVSPIHISRRRPIKDQSHQQPSFGDYFYAMTMSSNHSKRRDKYEQYLADEDEFDLHERAKRRRILIGYAS
AIATIATTSVQSTSGKALSIHRGRVPGAKTIKRERLDVAQSCHDMNDRHFRRRYRMDKESFWILLDIIEPHLPSTGESRV
RGSICSIPNGPITHTARLSMALRIAAGGDPLDIAVNHGVSDAEPTESFWLVVDAVHKSFQLDINFPTSHEAQYELAQEFR
SKSTIGITNCVGAIDGILMWIHKPTDQDCDVLGFRQTKFFCGRKKKFGLNMQAVCDARRRFLWVELRYPGSTSDFFAFDQ
SSLKCQLERAGFLREGLCLFGDAAYANSSYMCVPFRSATGTHDHFNFFQSQLRINIECAFGMLVHRFGMLRKAWPVNVSI
AKTNSAILALCKLHNFCIESNSGNDISTADVGDSSHIMMDGGMLLPRIDRVDGNEDTVRWMYDDTEDRLNALLDGGDHRD
DHADADRRRYRRHREVTPRHLIHNYIAENGFRRPPIRDIR
>CR1_Ele5_pol#LINE/CR1 935-4453  [Aedes aegypti]
QYISEGDPHGCTLVAIQLPSGKCVNSICTAEAIPDTALRSSKIDFQTKFPASFDIPTTCSPIGNTVDNSPSGSNYLLNDL
TGSAHPKLFPTDESSLDGFSYQLNELAGPGKDNTCICPAEAGNDATRTLIRPVLQINSVVPTDLDLLSSGANFVSSGKHA
SSICPAEAGEQSTPNLTHSTLQTCQASSCSAISTDLHQLTEPHNTNVTSANRITVYYQNIRGLRTKIDDFFLAAYESSYD
VIVITETWLNDQIFSPQLFGDRFTVYRTDRNSSTSSKKRGGGVLIAVTNRLSSALPSIAIDSTVEHLWVKIFVADNVVAV
GAVYLSPEIANDATVIEKHLDSALNITNSLKPGDCHLLLGDFNQSSIIWTHSSSGYLYADPRDSHFSPGSCSLLDGFSQL
DMKQLNYIEHHRGRILDLIFANSDIASLCSVQRANDPLLEEDPYHPALVTSLTCNCPVLFDEIETPNEFDFQKANFSTLD
YDISHIDWTPLLDASDVDGSVDFFTYTLKQLFINNVPVPRPRRKPPWSNNHLRNLKRHRSNALRKYTNLKTTESKRHFNI
ASNRYRSYNRFLHARYTNRIESNLKHNPKKFWSFMNAKRKEAGLPTSVFLNEEVADSCDDMCNLFAKHFSDVFRKESVDI
HRINNALADVPLNALNMEYFQFSENEVLNALNKLKSSSTAGPDGIPSIVLKKCASSLCAALTIICNRSIAESRFPTKWKE
SIMFPVYKKGDKRDVKNYRGITSLCAGSKLLEILVSDVLLSASKSYISPDQHGFFPGRSSETNLVQFTSFCLRNIEEGNQ
VDAVYTDLKSAFDLVDHLILIAKMERLGAPSFFTRWLESYLRNRRLSVKIRAVQSYYFTNNSGVPQGSNLGPLLFSIFIN
DVCCLLPAGFRLVYADDLKIYLVVKNHEDCIELQRLVDLFEDWCIRNHLVISAQKCTVISFNRKKCPITWDYQICGTLLS
RVTVVKDLGVLLDTNLSFRNHFSNIIARANRNLGFIMRSTGDFSDPFTLRSLYYSLVRSTLEYACVVWSPYTNVWILRIE
AIQAKFTRYALRLLPWNDIANMPAYEIRCRLLGMESLRNRRNSLRALFAGKLLLAVIDAPNILERLNINAPSVSLRSRDP
LRPDFRRTDYGINEPITALCREFNKVYHLFDYSISASVFKSRLRRFSLHPESE
>CR1-E_gag#LINE/CR1 397-1497 [Gallus]
MVSTRRRAKAAALAGGYAPPTPXMTSASTQTELLKEEASVQTXVCGKCLDLAPGAEVSGKLACVRCAQVEDLLRQLTDLQ
ETVKRLCTIREAEIERVSRIHVQPALNPQSGAKQPQTPPLAHPVGGEANSDEKWQIATRKTNKRKKPASKPEVPLQNRFT
VLQTEKEKETITGKSSELSKAARPAPHCITTTATKKKRRVIVVGDSLLRGTEAPICRPDPLSREVCCLPGARIKDVTERL
PDLVRPTDYYPLLLFHVGTSDTAVSNLKNIKRDYKELGAAVKNSGAQVVFSSILXVRGMGRERTDRIKKINKWLREWCRE
QGFGYLCHGTSFEKSGLLGEDGVHLSEKGKTIFGSKLSNLIRRALN
>CR1_Ele6_pol#LINE/CR1 1664-5149  [Aedes aegypti]
MDRSMKRQEQHNACSGNLADSICLAEVTVDTAPKSNDGHRFQKPSTIRIYHDLPLDDQQGPSQRVKIIDQWNQQTVCPGN
LAGSICLAEVTVDTAPHSNCGDRFQINSTRPYQCTTIIDEQERHHPVAHQVNNYDEQHSARAGKSMLSICRAEAWQDTTH
SSRDFHGFQDTNQQARTDEINNCETNTPDVSPAAAHASSSSPSDHSITFYYQNVRGLRTIIEDFYLTVMDAEYDIVVLTE
TWLNSEIQSPQLFGQLYTVYRQDRDSSRCGKSRGGGVLIAVNNRLASSRIDIARIDTIEHLWIKIEVSASTTYVGVVYIP
PDVASDSGTISTLVNSLETIVNASGLHDSHMLFGDFNQPSLTWCLSSGHGLIVDHQLSTTTVTSAILLDGLSLLNMTQVN
PFKNALNRTLDLLLVNDDIAEKCILYDPPEPLTRVDPHHPPFLVVYHCQSVTQFRDIVELAAYDFNRTDFEELNQAFQIT
DWTPLYAAENVNAALDYFVSTLTELFRLHVPLRRSPRKPVWSNGTLRRLKRQRAAALRKYSRHRNPFTRRSFIVASTKYK
CYNRTLYERHARRTQTNLRQNPKRFWSFVNEKRKECGLPTSMFYENDSSDSLDGICNLFAKHFSSVFDDTTATTEQLDDA
IRYVPENILDFHTCDFSANDILSALRKIKSSTAVGPDGIPTIVLKKCSNALCEPLRYICNSSIRQSTFPNRWKDSVMFPV
FKKGDKRDVANYRGITSLCAGSKLLETLVSQDLLRASKAYISPDQHGFYPRRSISTNLVQFTSFCITNMGEGAQIDTVYT
DLKAAFDRVNHQLLLRKIHRLGSPTDFVQWLKSYLVNRQLCVKLGNCQSVAFTNHSGVPQGSNLGPLLFSLYFNDVCLVI
PAGCRLVYADDLKIFLIVKSADDCRQLQRLLDLFSQWCEANFMCISVGKCAVISFSRCRNLLIWPYTIRGNAIERVASFR
DLGVILDSQLTFREHYSYIIAKANRSLGFIFRLSKEFTDPHCLKALYCSLVRSTLETASTVWSPYHDVWIKRIESIQAKF
IRYALRFLPWSNPDELPPYENRCRLLELDTLEKRRKMMIAVFAGKIITANIDAPFILSRINLNVVPRPLRTRNFLRLDFQ
RTDYAQHEPIRRMCEVFNCVYDLFDFNMSIDVFRNRLYSRNL
>CR1_Ele14_gag#LINE/CR1 367-1194  [Aedes aegypti]
MAKQCGKCLEPITGIDVVVCRGYCGAFFHMTSCTNVTRALTSYFTTHKKNLFWMCDRCAELFENSHFRALTNHADERSPL
NSLTSAITDLRSEIKQLNSKPSTSISPATNIRWPTIDQQRSAKRRRENDSNVRVTDQCRTGSKKANENVVSVPICQTDVN
QKFWLYLSRICPDVSVDSVSAMIKANLELTSDPTVVKLVPKDKDISTLTFVSFKIGLDPSLKSKALDPETWPEGLLFREF
EDFGIPKFRKPLPLKLSIPPLQQQPLQSPMTPTMEC
>CR1_Ele12_gag#LINE/CR1 140-1381  [Aedes aegypti]
MNCEICLLDSVTDSIMWSCIGRSRKFHPACVGVNIQRGSLRKKERRMDTSSFVLPCCSSCQTMVTASFEFKSLADQQAQL
AEQINKNTEVIHRSIQPNSLGVIDEAIDRLEALVTDVKNQLATAKSSCFAGNVNAVKNHITAMFDVALESSKSSISTAVQ
SIANNITDEVKGLSKDVRELASLTLDITSLEPMRNNPLLEIDILNELKAISANIMTNSSTEVESLDPTLDSPPSLNAELN
AKKEDNSGWRLLGTRKVWKANWEEYDKRQLRRLDQQKQAEKARRRRKRNATRNSTTSRNSRLENNVNNDCNNNYTNAPRR
TVFGSRRYDNDNSNKSNMNANYLPPDRELLAAAKNQFSRPPSNYRPTIRFEKRETLNPYQPDGPTNPQHIMTQRSPPSPP
CEACACKHSCFRRT
>CR1-71_HM_gag#LINE/CR1 229-1026   [Hydra magnipapillata]
MVTQKQLNDALENADKIAKEELKQALYVIKTLTARIDELTNRIDLQDIEIKSLKDSKSSEKPLLSKLVEQVGKPGTLANV
AVVSALNKHNKDVTNREKRIVVFGLPESVKTQPSEITKDDTAEFKKVMASLSKSVNVVRIERFKKKKNFDSSKPAPLMIE
VDSVFIRNDVLASAKQLASGTFKDIFIRPDRTAAEQSEFIKLNLERKAANSDLDKLGKLDKPFRFVIRSDKLRCIDVSQE
VEINGRKKHPFIKWKDAQAARIAKTQ
>CR1-31_HM_gag#LINE/CR1 191-1081 via tfasty/estwise with CR1-22_HM_gag, 2 frameshifts.  [Hydra magnipapillata]
MSTPYTTDQLAALAANWPGLGQGNHSAASQKLDATISKLIATVSILLTRVSVLENENITLKAYHSQQPKLAPTNLTTTLN
WASAVKHGSEANKAIITAVNENAKIVETKSKRAIVAGLPKSSDNNQRLISVQSMLQKKKAxYNVAFKVVGHFSAKTSLTK
KFNTTTNTNQFNYNSSxPNELIIIEFDSNEHRNDLLSNAKRLASIDELKSVYIRPDRTPLEQETFNNLNKKLLPNTKNAE
LLAKDLLDKPFRFVIRSEKIKCIDTSKTVNINGRERNPYLKWKSAAEAIQSLSASY
>CR1-31_BF_pol#LINE/CR1 102-3392  [Branchiostoma floridae]
MSRQRLVLLYLTMLLISKSYSPEPNPGPLLDQCPNHTCTNDSSSSQSHSSWACGTCDLRVSWNDRGIECEQCGQWFHGQC
QSVDTQCYEQLADSNIHWYCAICGSPNSKTVFDLHGVDWTDSSLHDSTLDSCTTPTDLHFNPQHVSTPSKSSQQDKWKNR
PLRVLNINFQSASAKRAELPYLLESLKPDIVLGTETWLDSTVATAEIFPDLYRVYRRDREGRGGGVLVAVRNNIDSYTAP
ELEVDECELTWVRIKLKGRKTLYVAAFYRPDVSDEDSLIRLRTSLQRTSQLQNALLLIGGDFNLPGWDWSTNTLKPKSPY
PRLHQDFLDMLYDNGFEQLVNQPTRDCNTLDLFLTNCPDLIPRVEIIPGLSDHNIPYCEINTSFRGKCQIQRQIPLYARA
DWDSLRAVAEDLSTDLQVKKSSHSTDELWSTFKDTLLAAIKKFIPHKTARPKNNLPWITPSIRRLINKRDRKYRRMKKTG
SAKLREEYKSLRRTIQRQIRRSYWSYLNSIFTEDSNTCQVNNKKFWSYIKNQRSSNTGVAPLKKNGRLTSNPQEQAVILN
DHFQSVFGDGRQYSEEEFASKTGMTNIQTSEMDDITITCEGVKKLLKKLDPHKAGGPDGINSRVLRELAEELAPALTTIF
QSSLSSCVVPDDWKCAYVTPLFKKGEQYNPANYRPISLTCISCKLMEHIVVGAVMQHLESNSILTENQHGFRKGRSCETQ
LLELTEEVINNLEGGKQTDLIVMDFAKAFDRVNHSLLTHKLRCYGIQGPTLAWITSFLQNRRQAVVVSGHYSPFVSVRSG
VPQGSVLGPCLFLVYINDLPDKLSSMSRLFADDTAVYRIITSSQEQDQLQLDLHKLEQWENSWDMEFHPAKCVHLPITRS
RKPFQRSYVLHGHTLETVSTVKYLGTTMSENATWDTHINTMVTKANKTLGFLRRNLKISSVRIKEKAYKAFVRPVLEYAS
SVWDPHTKKNIDKIEAVQRRAARFVLNKFHNTSSVSSMLSTLGWQSLKQRRKTARLGTLFKIHHGIVQCPVISSKLVPPP
TRQRRKHNCQFKQITTRTLYRDGSFLPRTIKDWNGLPAETVEAATVDTFVSRASAS
>CR1-33_HM_pol#LINE/CR1 1058-4054   [Hydra magnipapillata]
KSYQNLSNVKLPIYLKQNTSTNYKPIKFYYTNATSCNSNKLSELSTLALAYEIDVIAIAETWFKLDSIKIIDGYELYQAD
RDRIGGGVAIYVNKRLTNIEIVNVHLNNKEIEQVWCSINCNNFHLIVGCVYRPPNSTADYSKLILDSIRTASKLKSGKKY
TDLIVVGDFNFPNIEWTDDGPIIHSNGNSIEHEFIKVLNDCSLYQIVNFPTFKQNDSVSAVNTLDLVLVCNPNCIDFLQC
GPQLGHYEKGRYHYSITWQYFTSLSNNTVLTKDKFCFKKGNFFQMNKYLKQVNWVEHFYNKSACECYELFLHTYNESCRL
FIPILNNKKKNSQPWLDAKVKKAIKIKHSMFYSNLHRQSQESRKAFNKMCANVKKQIKRSTREYEMDLVKRAKLAPKLLF
SYVNRKQNIKTQIRAIKNKKDQVTTEISDISDILNRQFQSVFVNDNDQPIPEFLQRCENQCDCSKLSNMITYEKILKMLE
GIDESKAMGFDEISPFVLKHAAEGFVDPIVHIFKLSFDTGCVPYHWSVANISPIYKGGSKLEPENYRPVSLTSVICKMFE
KLIRDTILQHLVSNRLISEEQTGFVPNKSCTTNLIETIDTITFETAKGKPLCVIYLDFAKAFDKVEHKRLLTKIKAYGIT
GKIYNWIESFLANRKQRVAISNTVSEWVSVTSGVPQGSVLGPMLFLLFINDLPEVVLNTFKMYADDSKIIAIEDSIDKQA
EIQTDLDNIVKWCNNWGMELNCKKCKVMRFGNQKVFRGIDKTYTMNINGMIYDLSNSVLERDLGVFVQPDMRWKHQTQVC
VNKASKILGLLKNAFESRDCYMWKILYTTYVRPHLEFAAPAWSPPNVAEISMLERVQRRATKIPYSNRMLSYEKRLVKMD
LINLNLRRKRGDLIHLYKILNNLEFVNLNVKPVYKSSIKLDGPCSSIRGLKHKIRMQCFTPREINDFHASVSSRIHFFTN
RVCQIWNKLPEKVVDSENLNSFKASLDEWLKKNKKILI
>CR1-49_BF_pol#LINE/CR1 3-1496 fragment [Branchiostoma floridae]
VVLRRCAHELAPQLTALFNQSLRLGWVPTQWKDANVCPVLKKGRKEFVENYRPISLLSIVSKVMERCMFNRIFPYLKEQI
HPFQHGFIKGRSTATLLLQIYHKIGSILDNGGQVDVVLLDFSKAFDCVSHRLLVHKLKMYGVHSNLLAWFKSYLSCRRQR
VIVENVHSDWLPVVSGVPQGSILGPLLFLLFINDLPYVVSNTMALYADDSKCFKQISTVIDCVSLQKDIENMYNWGNTWM
MKFNTDKCKILTIGRGKNQIQFQYKMEDRFLEVVSEFNDLGVSASGQLTWKFHIQNIISKANSTLGFIKRSVGFHAPLSV
KKALYMSLVRRKLEYCSTVWSPHTHELIERLESVQRRGTKFILNNYQTDYTYKDRLLSCSLLPLSYRREILDLVFIFKCF
LGYYEIDVNNYLTFPHPLLRSHDQAKLTPGKCNTTTFMYSFFLRIAHIWNSLPTEIRQLRLIPDSSIRRFKQDISGHYLS
LLSTHFDAHKTCTWTTC
>CR1-47_HM_pol#LINE/CR1 927-4065 via tfasty with CR1-23_HM_pol, 1 frameshift.  [Hydra magnipapillata]
MFLNQQQSHSKANEVTSIVAILKETVHQLPSQFHLPHLTTSKPEIHLKSNNKRIRPIRLKLKSKPNLSQLSSKSSTSSSL
ISGQLCFWANNPCSLNNLKRGELIARISSKPMHEKPHIIFLAETWYNNTSDTFVKGYELHRADRESRGGGVAIYTRNDII
TTEVRNKQLNSKAIEQVWCIIKFDGESLLLGCIYRPRDINDIVLTQTIESITGTAKQAMLTYNCSCMLLYGDFNLSHTWY
ESIEINGKVATVGHVIDECPRDLRFQSCLEDNNLTQLITFPTYRHSNLVEPSSTLDLIISDDPDRFIKVSEDDPLGFTKT
GQSHCVIAGILAVHLKETAPKLSRPRLIWNRADYDAISTKIASNNWHTMFEGHTANDNFSLLVNIYKKYIKEHIPSTLVP
PKIKNAPWVTPEVKAAVKEKHTLWLKYIAAGRHTHENLRNAHKVACKNVKKVVKEAILSYEDDLVYASKSNPKCLHLHIR
SKQRVHEQIRSLQTMNNSTTTKKDEICALLNNYFQTVFAVEQEGSMPYFNLRTQTICQFDEDSIHEREVEKKLKGLSENK
AMGYDKIHPRVLKKCATSFAIPITIIYKKSISTGDVPDLWKKSNITPIFKKGSKLQPSNYRPISLTSIVCKVMESLIHDC
IMKFCTKHNLISKAQHGFVPKRGCVTNLLEAHDILTQSMHLGFPADVIYTDFAKAFDKVPHRRLLHKLRAYGISETLLKW
VKNWLTSRQQRVVLDGITSEWVPMTSGVPQGSVLGPLLFVLFINDLPDTIVHHTKLYADDGKIIGVIKSLQDANLLQADI
DKIVDWSHKWLMPFNINKCRVMHVGRTNKSTHSYTMAQLDGTRCTLEETIVERDLGVIVSNDLKVKTQVETAVSIANQMF
NRLRKAFCSRRLVLWKTLYLAYIRPHLDFAVQVWSPHLKKDIVMMEKVQRRVTKTISEIKHLPYEERLQKLKLTSLEDRR
KRGDLIQQFKFTQQIDEVNFHFPLTLINSKTSYNLRGHNQRLMPQPVKGCIERENFFTNRVTKQWNALSQQAVDSPSVHF
FKKFLL
>CR1_Ele14_pol#LINE/CR1 1194-4637  [Aedes aegypti]
LTLVNPGYNRCTSFGETQLFSCSPASSSSPPGCTPASLWEAPDPLGTVEPLLPATCSHPGPVSECGDGVFHHENAGKYNC
TKDDSLPLTLIASSNLVETHSRLYNRRFVDVDDFRSSRSISSSSPGCMPASFLGAPYPLGTVEPLLPATRSHPGPVSECG
DGVFQHVDAGKYKCIKNNILPSTSIVSSRDDNDDAIWIYYQNVRGLRTKIDDLLLATTDCNFDVIIMTETGLDNCINGQQ
LFGSGFNVYRCDRSPVNSSKSRFGGVLIAIAQRYVSSVERTVSAQSLEQICVSSTIKGRKVFMCAIYIPPDRSQDVNVIN
DHLSALNELCEKCSLGDAVLVCGDYNQPRMNWCLVDNTVQCNSRQLPLASSTLLDGMDYLCLAQRNLVRNQLDRTLDLVF
CLSECVADVDCSLAPMLPVDSHHPPLEISLPACLVRDERIAQPQENRPLNFRQIDFDALLDYLLIIDWNEIFLSNDIDQV
AENFCSILNNWLALNVPRIRPSVSPAWSTPRLRELKRARNACQRKLRRQRTPSNKRKFQRASNAYRFKNASLYKLYILRV
QRDLRRNPRGFWRFVNSKRKSSAIPTNVFLNEQCARTAVESSQLFARHFEAIFAANTASIQEVADATRDVPADVVDLSAF
TINPDMVLLAAKKLKRSYVPGPDGLPAIIICRCISALVQPLCDIFNQSLQQAKFPRIWKQSFITPVFKRGDRHDVTNYRG
ITSLSAVSKLFEIIMCGIIFETTKCYISVEQHGFMPSRSVTTNLLTFTSKCMKSMEEKAQVDVIYTDLKAAFDKIDHRIL
LHKLSRLGVSTHLVSWMESYLTGRELRVKIDGCVSLPFSNKSGVPQGSNLGPLLFIIFFNDAGLVLGEGFKLIYADDLKL
YIVVRTENDCMRLQNSLTLFADWCRRNKLIISVEKCQVITFHRKMHPIVFHYEIDGIILNRVDHVTDLGVQLDEKMSFEL
HRSAIISKATRQLGFISKVAKDFSDPHCWKSLYCSLVRPILENASVVWHPHQLTWSLRIERIQKRFIRLALRNLPWRDPD
NLPPYPDRCRLLGLETLDRRRKVQQSLLIAKLLNGEVDAPELLSLLEFRVPNRVLRSTTLLQSSFHRTVFGYNEPISACI
RAFSAVEEFFEFDEPTRHFANRIRSVVQ
>CR1_Ele34_pol#LINE/CR1 1438-4902  [Aedes aegypti]
MFVVSSSPASISFHRTSTFGSPGRTPASSLLEASDSPNTVVPLLPATCSRPGPVFGSEEEVFQHSSAGKYITPTNYSLPE
IFVVSSSSMSNDSCCTSSFLPPGRMPAPSLLEASDSPSTVEPLLPATCSRPGPVCGSEEEVFQNPTAGKYTVPPLSCSRT
EIRVVSSFYDDAPTATPASSCSIAHPTNQDITIYYQNVGGMNSDIDDFRVAISDHCYDIIVFTETWLDSRTLSHQIFGNA
YEVFRCDRNADNSRKTTGGGVLVAVNSRLKTKKVESPSWVCLEQVWTSIKLGDRSLFLCALYIAPDRIRDRELIETHCQS
VYSVLESTKAKDEVIVLGDFNMPGISWEKSSNGFLHPDIGHSVIHSNASFLLDNYSSATLSQINHVTNQNNRRLDLCFVS
TQDTAPFLCEAPVPLVKLTLHHPPLLLAIGSKLPHDYVISPNVVYYDFRKADHRGIAQLLSGFDWSVILDSDDIEEAAQT
FSNVLSYVLDRHVPKKVQHHSFRPPWQTSELRRLKSKKRAALKKFTTHRTPLLKRHYARVNNEYKQAAKDCFLRYQRGIQ
TKLKYRPKQFWKHVDEQRREAGLPSCMSLNGNVASSPQDICNLFADKFASVFNDEILSDEHITLAAANVPQFGQTLSSVD
INEDMIIRASSKLKTSYNPGPDGVPSSFLKTHMRDLISPLLHVFRLSLTLGVFPSTWKLAHMFPVHKSGNKHDVGNYRGI
TSLCAVAKLFELVMMEPLLAHCKPYISVDQHGFVTGRSTATNLLCLTSYITESMSKRFQTDVIYTDLTAAFDKLNHNVAV
AKLDRLGIHGCFLQWLQSYLTGRHLAVLIGDCYSSSFAATSGIPQGSHLGPXIFLIYFNDVNLVIEGPRLSYADDLKLYL
RIRSIDDCYFLHQQLNAFADWCNLNRMEVNPAKCSVISFSRKKQHILHSYTLSGEVIKRVSQVKDLGVILDAQLSFKQHV
DYAVGKASRVLGFIFRTAKEFTDIYCLKSLYCSLSRSILEYCSVVWTPHYNNGVLRIESVQRRFLRYALRRLPWSDPFRL
PSYQSRCQLIDLESLSVRRDTARALLLSDVLQGRIDCPYILNEININVQPRALRNRSMLRLPLQRTNYSTHGAINGMQRV
FNRVATLFDFNLSRHSLRTRFSSFFFKCFLICPFL
>CR1_Ele34_gag#LINE/CR1 434-1222  [Aedes aegypti]
MACNKCQETIADTERIICRGYCGHSFHLTCVRMDHSFRDVQVAHERNVFWMCDGCADLFSSDHFRKISSRYSNEIVHDEA
SIKCLKDDIAELKQIVGLLSSKVEAKPTTPIMSTPWSGLNRMRSSSNVPNTPKRQRVESLPMERPTIIRGSKAASELVKT
VSPPEELFWLYLSAFDPCTSEXDVSNFVRNCMGLSAEVEPKVVKLVPKDKDPATLNFVTFKVGMKLSLKTSALSKETWPE
NIYFREFENQPKNQRKIVRVTAE
>CR1_Ele38_gag#LINE/CR1 280-1140  [Aedes aegypti]
MSDACDHCAKPVRNDDEYISCMAFCERMVHIRCSVTKLNKPFVKIIQESPNLIWMCDECVKLMKIARFKSVVSSFGEAIQ
SITEKQESVHAEIRKELAKQGQQIALLSKRMTPSSPFLREPGSSFQQPPSKRRRDEEFNFKQVATKPLLGGTKDTTTASI
LTVPEPEELFWLYLSRVHPNVKPEAIEKLAKDCLQCDKPIKAIPLIKRGTDTSRLSFISYKIGIDPKFRDAALSPDTWPK
GVLFREFEDQSSKNMWLPRLHTPTITVSPEIGASQFSTPTSVVNLAN
>CR1_Ele41_pol#LINE/CR1 2-3277  [Aedes aegypti]
SQPALPGKYACYTRRSXRDELPNFSSLSAADVTSMTPKCNPVMSSNGQQPGRSVESLMEAPGPSDPVERNAVTVLHSRPG
PAVGCGTGVFQSATSGEYSSIIDNAPSPSIVLNSRTCNARKMPISVNAKKSDDLLIYYQNAGGMNCDVDKYLLATSDDCY
DIIVLTETWLDTRTISTQVFTPEYEVFRCDRNPRNSRKSTGGGVLIAVKKKLKANIIENDLWCSTEQLWVHVQFFGHSLF
LCGIYIPPDRARDETLIETHLQSVTSVIEIAKPMDEIVVLGDFNLPGISWISSGNGFLHPDMNHSHVHSAASRLLDGYST
ATLRQINHVTNENLRSLDLCFVSAQDVAPPISNAPSSLVKQVNHHPPLVLKLIVQHYSTSESIAQVTYDFTKADHEGILE
FLAAVEWTEVLDTRDVDNAVSTLAHILGHVIERHVPKKTLASKGLPWQTRELRTMKTAKRTALRRYTKNPTPRMRDQYVR
LNAAYKRTSRHCFNRYQQQVQRDLTAKPKSFWRYVNEQRKVSGLPPSLFLNGDVASEPQSVCQLFAQKFSSTFCDEVIPE
VLVTQAASNVPLVNDSWATLTVDDDMISRAASQLKSTMKPGPDGIPSAFLKRHIDSLLVPIRHVFNLSLISGAFPSLWKN
ASVFPVHKKGERKDVNNYRGISSLCAISKLFELVVMDPLMTHCKNHLSDDQHGFISGRSTATNLIRLTSHIADSFAEGAQ
TDAIYTDLTAAFDKINHAIATAKLERFGISGNMLRWLHSYLIGRKLTVTIEGFQSNEFLATSGIPQGSHLGPLIFLIYFN
DVHYTLKGPRLSFADDLKIYRRIHSDYDAMCLQQDLHAFASWCTLNRMTVNPGKCSVISFVRIRRPVVFRYELYNTVIQR
VDSVKDLGVILDPQLTFKHHVAYVVAKASRTLGFIFRVAKDFTSVYCLKSLYCSLVRSTLEYCSVVWNPYYQNGSDRIES
IQHRFIRFALRQLPWRDPLRLPSYRSRCQLIDLETLQLRRDIARAMVVADTLQGRIDCPVLLQSLDLNVRPRVLRNNTML
RLPFRRTNFGQQSAYIGIKRVFNRVASVFDFHLSRQTIRRKFKTVFLSFLDE
>CR1_Ele38_pol#LINE/CR1 1155-4889  [Aedes aegypti]
MQRSNVATSVTKCRKPERFACRIKGALDPLDTVAPACSCHRSRSGPVVEIGDGVSQPSISGKYACFCSNSLPDQLQFFSF
PSDLVDHNNIDTGTQYSIQLNPNNQSTPTTTEHQVERSFTSSSQPGRSAASILEVSGSSSSVRPFPASVLHSRPGPVARC
GSEIFQSALLGKYTQVSAFPMPDAVPNFSILDSTDASDASSTLTHGHPERTVESHMEALNPSDAVQPPAVVVLHSRSGPA
VGSGARVFQPLNNGEYSTYVSSQSMPDAHVPSRNIGVSKVRRKEDIVIYYQNVGGMNSRVNDYRMAVSDSCFDIIVLTET
WLDSRTLSSQVFGTDYEVFRCDRNPNNSRKLTGGGVLVAVRSRLKAKLIEKESWKCLEQVWVSIKLGDRSLLLCTLYIAP
DRVRDNELIEAHCDSVITAMESANPVDDVFILGDFNLPGISWLSSQNGFLYPDPVHSSMHDCAVSLLDSYSAATLAQINH
VVNENNRSLDLCFVSVQDQAPFIGAAPCELVKAVPHHPPLIIAVENNQAHDFDNCPAGVSYDFSKADHRSIAAVLADINW
DNVLDLRDINTSAQTFSHILTYVIDRHVPKKVVHHDSRPPWQTSELRKLKSVKRAALRRYTKYRTPSLRSYYLRVNYEYQ
RVSRHCFLQYQRSIELKFKRKPKSFWKYVNEQRKESGFPSSMEWNGKSSSCLQEICQFFASKFSSVFSGESISNDQVICA
ANNVPMNGQALGSLDLDINAVSRAASQLKSSNHPGPDGVPSAFLKEHIGNLLAPLCCLFRLSLSSGIFPSCWKVANMFPV
HKKGRKRDVDNYRGITSLSAVSKLFELVVMEPLLSHCKHLLDSDQHGFIAGRSTTTNLLCFTTFITDSMIARVQTDAIYT
DLSAAFDKLNHDIAIAKLDRFGVCGNLLSWFGSYLTNRQLRVVIGDCSSDSFHATSGIPQGSHLGPLIFLLYFNDVHLVI
KGPRLSYADDLKIFLRICSVADCLYLQQQLDSFASWCSLNGMVVNPTKCSIITFSRKKQPITFDYSLLGTKIERVNHIKD
LGVFLDSQLTYKQHISYTVSKASTTLGFIFRIAKNFSDIYCLKSLYCSLVRSTLEYGSAVWSPIYNNGAERIESVQRRFL
RFALRKLPWRDPFRLPSYESRCRLIDLDLLRNRRDTFRALTIADVLLGRIDCGTILERVHLNARPRSLRNSVMLRLPLTR
TNYGLHGALSGLQRVFNKVASLFDFNTTREMLRRRFLSFFDERRV
>CR1_Ele32_pol#LINE/CR1 3-2837  [Aedes aegypti]
LRTKIDALYCNAIDCNYDVIILIETGLDAAINSVQLFGDNFNVFRCDRNAKNSTKSSFGGVLIAVHRRFTSSSISITTGE
SLEQVCVSVLVGNQRILLCAIYIPPDKSKDVNVMDEHIESVRELRNLSSGNDYLLVFGDYNQPELCWKRCGDEIRPTNSG
SISAASSSLIDGMDFCNLHQMNIERNHLNRTLDLVFTSLELSPEITCSVAPLLPTDQHHPPLELDLMLPNGVNNVPTVSN
ATGELDFTKIDFEALSLFLSETVWHVLLDGLTADNMAETFCSVIANWLNTNVPTRRPAVSPVWGTPLLRNLKRRRNALQR
RLRRHRSLENIRSFHRACDEYRELNSSLYKSYVLRVQSNLQRNPKQFWNYVNSKRKSSTIPMSVFLNDSVSSSPLEKCEL
FAAHFSSVFDAKPASPSEVDSAVSDVPRDLLDLDIFQITPAMVSQAAKKLKCTFSPGPDGIPSAVYCRCMSALAEPLCRI
FNQSFVDSTFPAIWKQSFLVPVHKKGEKRNVINYRGITSLSAASKLFEMIVSDVILAQAKGYISIDQHGFMPGRSVTTNL
LDFSTTCFEQLENGAQVDVIYTDLKAAFDTINHDILLAKISKLGASNRLSSWLLSYLTGRTLRVKVDSCMSSSFTSMSGV
PQGSNLGPLLFLLFFNDVMLLLGHGCRLAYADDLKLYFVVRTVEDCVRLQALLDMFVDWCRRNRMTLSVPKCIVVSFYRI
TRPIMHNYVVNDVVLKRADSFCDLGVLLDHKLTFNLHRSNVIAKANRQLGFIAKISRDFTDPHCLKALYCSLIRPILESA
AVVWTPYQLSWSLRLESVQRKFMRLALRNLPWRDPLNLPPYPDRCRLLDLDTLDRRRKTQQVAFIAKLMNGEVDCSRLLS
MLNFRVAPRVLRGGALLQQRFHRTAFGSNEPFTSMIRLFSMFEDLYDFDGSSNQFVSRVRSSDLI
>CR1_Ele19_pol#LINE/CR1 1000-4002  [Aedes aegypti]
SNETEIIXPLSSNPARLCYPPVHINAPTVCTSFAPLTTRDNIVKTVDTHNPLKSSMTVYYQNVRGLRTKTNELFAALSCC
DYDIVVLTETWLNGNVLNSELTNEYAIYRCDRNPSTSQHLRGGGVLIGVKNTIPSNVLSVSGAERLEQVVVQATVGCVSL
VVCAIYLPPNTELDLYEQHAACINELHNRLSDGNRVVVLGDYNLPLLRWCFDDDIGCFIPMNASSEQELSLVENVVASGL
QQVNHLINENGRLLDLAFVNSGNTCEIVEPPLPLMNVDRHHQPFVMVIETLLSELDDDCSNLAYDFNQCNYDELNFAISQ
VNWVEILNLDALDDAVDRFYGELNSIFRRYVPLRRQTQLPRNKQPWWNGELRNLRNRLRKARKRYFRSRSDDLKALVRDL
ECKFNSLNASRFRSYISRLESKMKDDPKHFWTFLRNRTSNCGAPRIVNYQNETSTTWIESANLFSSFFRSVLSNNSPPLS
ETYLNSLQTFDFNLPATTLTEQDVYSKLRDVDRSKGPGSDGLPPSFIKACSISLALPASLLFNRSLAESTFPSRWKDALI
TPIHKAGNLHDVRNYRGISILSCLAKVFESLVLDLVYPAVQNVIMNEQHGFVKKRSTTTNLMNYVSTLIENLEKRQQIDA
VYIDFSKAFDQVPHQLAVEKLKRIGFPDWLTKWISSYLSGRFASVKLGAVKSDPFQVTSGVPQGSHLGPLLFVLFVNDLC
SELKSSKTMYADDLKIFRVISSLVDCCALQEDIEHVLRWCERNGMEVNVQKCNIITFARIRSPIVFSYAVKDCSLNRVSL
VKDLGILLDSKLRFTEHISSVVAKSFAVLGIIKRNAREFKDVYCLKTLYISLVRSILEYGVVVWTPFHAVHIERIERVQK
AFIRFALRRLPWRNRPHLPPYEHRCALINLPTLKTRRTYLQRLFIFDLLENNIDCPELLTRLRFNVPARTTRRTEFFRRS
THRTQYGQNSPLYVCCQSFNDVNQYYEFRISKLAFKSRIRF
>CR1_Ele15_gag#LINE/CR1 383-1297  [Aedes aegypti]
MEACHACSTLMESGRVINCNGTCGRLYHFTCVGMSKSQFTAWTAXIGLYXFCESCRLNFEPAVYDRDKTIMKALRELLIR
TNSMDTRLANYGENLRKINSTIFGPKQQSKSSTDSLHQSNFLQQIDEMTLDDTTDDPINRSRSCENTSFFEVLDEVNGSI
ALLPDKFVVGANKRVQIIANPSSGSGSSENSPRITVSTPAATNKQTFAQNDRSSRRHTDRITNPSVLPGDRMSVTNSDRS
QNGVSRTRPEAPSLKVANITSDSHELESFYVTPFAPDQNEEEVKRYVREISNVHTSLCERGQTGT
>CR1_Ele25_gag#LINE/CR1 320-1234  [Aedes aegypti]
MRGGLDQTISSVTVEKCFASNMSLVCCSCAGDIGEIQVECQGFCKAIFHPRCCGVAAEVFEQVMRNNQLFWFCPSCTALM
KDMRLRNTARAAYEVGQGHALNSHSDIMANLKTEIMDELKAEIRNNFAKLVNSNSFTPKSSRRVGIDPRFTRSRRLFSTA
ANPIPNNQPPLLLGTGSTPSPSIEIATVPPPQPKFWLYLSRIAKDVSVDQIRALAKKRLGSDDVQVVRLVARGRNIDTMS
FISFKIGVNLDLKPKALSTSTWPKGIVYREFTDNNKNENFWRPEPVAATDDPLSFASEEEVVLME
>CR1_Ele27_pol#LINE/CR1 1210-4804  [Aedes aegypti]
LVSSCHQSHPGPVFAEKGEAFRTPLAGKYLNYASPIVPEVFSDFSNADCERAYFGGQPVLGNLMVDSPVLIWAPRRALHH
DPPFFNQHSPGCTCESFMEDSNPPETVEPINEYSPYLHHPISSCQHRHPGPVFVERGGVFQTPTAGKYSNCSSLHLPEVL
LDTHRTHFDAADANDGTPEGTQHSVEIHHSDVQCATQQHSGHQRGLATTPVNRQSTPVDRFLSVYYQNVRGIRTKTNTLR
LMLSSCDYDVIVFTETWLRQDIADSEISSEYNIFRCDRSAATSEFSRGGGVLIAVKTALQCSALELSDCGQLEQMVVRIK
LANRSLIIVAIYLRPNSIPASYTAHTNAIQALCDMVSDTDIILALGDYNLPNLQWQFDEDINGYLPTNASTEQDVILTES
FSTSGLIQLNSISNSNGRILDLAYANTPDYIELIDPPLPLIKMDEHHKPFILRLDTRYTSPCFDNVPMDATAFDFKRCDT
DALRYKLSSIDWIHQLSCSSVDETVCAFYNILHGIFDQCVPHRRLAPAIVNRKPWWTAELRQMRNRLRKTRNRYFGDRTD
ANRIALHQLETDYNDLLSSTYAVYVNNIQSNLKQNPSSFWSFVRAQKSSKRTPCNVEYNGQTASSAKEAANLFANFFQSV
FRDSSPAARFHHLPSYDVNLPDFRFSAGEVLELLHCLDASKGPGVDGLPPSFIKSCAHELVTPVALIFNRSLTEGTFPAM
WKTARMIAIHKGGSINHVENYRGISILCCLGKVFETGVRRYLYNAAKPFISEFQHGFVENRSTTTNLMEYVNTLFPAVES
RCQVDSVYVDFSKAFDLVPHNLLIEKLRHLGFPNWITNWLNSYLTDRKAFVQVNQQVSTHFPIPSGVPQGSVLGPLIFVL
FINDLADRVSSGKLFFADDLKMFRIIASALDCTALQNDIDQLTDWCQENGMFVNIKKCKVITFTRCHTPICFSYKIGSAS
LERVESIRDLGVIMDSRLNFNEQVSLAVSKAFSVLGLVRRHSTFITDIYALKALYCSLVRSILEYAAPVWAPHQVTQILK
IERVQKYFIRFALRQLPWENPSELPPYNSRCLLIDLETLSARRTKLQRVFIFDLLSNRIDCSALLNSXNINVPSRTLRSH
NALVLPVSRTXYGFNNPFYVCIRAFNTVFHLFDFDISKNVFVSRIKNIA
>CR1_Ele27_gag#LINE/CR1 399-1298 via tfasty with CR1-3_AG_gag, 1 stopcodon. [Aedes aegypti]
MDCAKCTMKIAGIESPVVCRGYCGSVFHMTCAGVSRALTDYFAKHRKNLFWMCDKCAELFENSHLRAITKQADEKSPLMS
LTNAITNLQTEIQKISSKPASTMSSPNRWPMISEMTRAKKRPRGFDSSECQSGSKQLDQNVVSVPVSEKPAAKFWLYLSR
IRLDVTNEAIAAMVKANLELDSDPVVVKLVAKGADTSNMSFVSFKVGLDPSLKDNALDPSTWPEGIMFREFEDYSSQKFR
RAPTVSPGLSPLATTATITVNxMLIYLRRDAPAKAVRKALSHPKQSHHSPFTINDYIRTT
>CR1-4_DBi_gag#LINE/CR1 76-906  [Drosophila biarmipes]
MNSYSCSECNAEVTAAQLRGFEAVRCSSLCRRTFHTACVDLPEDAIRLLTSMPNLLWQCDRCVVSNDSYSKIDEVMEELH
DLKSLYMDLNSKFLKAFPNSTTDNSNVSQRKKMVKPLAPPSSIGRQANHADLIPPAPVSTAARNHAKNNRNKRQIVGQAP
NCELLEVVPSNKFLHIGRFRAHVKSDSVCEYVANKLGVDTATIICKPLVKNGVDVATLEFVNFKLGIPEQHFQTVFSDAF
WPNPIKISRFIHRDRPIVDGNVLDLHNHHTSESKNPQ
>CR1-3_Gav_pol#LINE/CR1 334-3238 via tfasty with CR1-11_AMi_pol, 2 frameshifts and 1 stopcodon. [Crocodylidae]
LGDGRSINSSSPGHANHSSNTLGSPREPTLMTAQGKVTSRHIRKPRASHGRLNCLYTNARSLGNRQEELVLLLTDKEYDL
VGITETRRDSSYDWSVGVEGYTLYRRDRVGKRGGGVALYVKEQxTSLQTEFSNHGGHLETLVKIWGGHEEGDILLGKNYT
PPNQEELDLEFTRELAKAAHSRRMIVMGDFNLPDILWEEHTAKSDRLRNFLTCIDNLYLTQEVYGLTRGEALLDLVLAKG
DDLVSDLRIEGKLDDSDHDLITFSVQCRVGKSLSKTEILNFGKADFHKLRRLVSQALRDHGPLGRGVHEEWLFLNNSILK
AQGKSIPSHRKCSQRAGKPPWLNRELLGLLKLKREAYTRWKTGIITKEDYSALARTCRERSRKAKAVTKLRLATGIKDNK
KSFFRYVGSQRKNKSNIGPLRDQMGQLTSDAQEKANLLNDYFASVFHPPKGVTLSDRTQSIQGSGDGPTIDVDQVREHLE
RLDIHKSAGPDGLHPRVLKELADIIACPMAKIFESSWCLGDVLEDWKRANVVPIFKKGRKEDPGNYRPISLMSIPGKILE
KIIKGSICNRLTEGNLLNASQHGFITGRSCLTNLISFYDQVMHCLDKGDEVDVIYLDFKKAFDLVSHDVLMTKLGNCGLD
HLMVRWLGNWLRGQTQRVLVDGNKSMWRKVTSGVPQGSVLGPVLFNIFINDLDSGIRCGLAKFADDTKLWGKAVTLEDRL
GIQADLDMLAKWADQNLMAFNVEKCRVLHLGRKNQHHTYRLGGATLASTMTERDLGVLTDHKMNMSPQCNAVASRANQTL
ACIHRCISSKTRDVILLLYSALVRPQLEYCIQFWAPHFRRDVDKLERVQRRATRMIKGQESKPYEERLRDMGLFSLVKRR
LRGDLVAAYKYIRGVHQDLGEHLFTRAPQGITRSNGHKLLEGQFRLDIRKNFFTVQVSKVWNRLPPEVVQAPTLDSFKRH
LDVYLAGII
>CR1-4_DRh_pol#LINE/CR1 298-3135  [Drosophila rhopaloa]
FSLHYQNVRSLLGKLSKLHVNSVSFDANVIAFTETWLNSSVSDCEIFAGSYVIYRCDRSMRLGGGVLIAVKSDLVSQRIP
IIGTDSILEFVAVRIKLHDYFVFISCSYIPPRSDISLYLQHLAQIQSIHSTLGYNDHLIVMGDFNLPDISWMTSTDSIAL
VPTTAHEFVHGLIDLSLGQLNSILNCSKKVLDLIFVSEFANAFVTRISPLSNPEDAYHPTLEVTLEASAPLQSCSEIEPA
SFRCFRRAKFAELNRHLSELDWSFMDSNDDPLHIVEQFYGILYSAFDTFVPSFPSANAPQKPPWFSRRLSFLKNSMSRLF
KKFKRTGLQVDHSMYLIARSNFLVHNSVCYNGYLNRCRIEFQDNPKQFYAFVNSKRKSQQFPSCLHLDTTSASSDADIAN
LFAKFFQSTYSSFSYDNTSSYPYPFLTPTVIFTPLISEDDVLQNLKTIKMSFSSGPDLVPSCVIKKCADALCKPLSKLFQ
ISLLHSFFPEVWKESFIIPLHKKGSKSDIKNYRGIAKLSAIPKFFEQLITAQLQHQCSSVMSPTQHGFMKRRSTTTNLLE
FTSVIRSAFKNNIQTDVIFTDFSKAFDSVNHQLLLKKLTLLGFPIMLTKWISTYLSNRTQRVAFKSTISNSVHVNSGVPQ
GSHLGPLLFGIFINDLPQVVLSSYVMMYADDVKLCLPLSNPNSHDLLQADLNNLHSWCIQNLLFLNNSKCKLMSFYRKRL
LLTSYSIGSNDLERINSVTDLGVLFNHNLNFSDHIGTIVSKAKGVFAFVKRWSKEFEDPYTTKHLYISLVRPILEYCSCV
WSPQYTNHQDLIESVQKQFLLFALRGLNWETHRHLPSYVDRLRLLNLPSLKDRRTCHGVMFLHKLITGLVNSSYLLGQIR
FSIPVRSTRYFRPIALDICKTNFEVHDPFRVLCSQYNELYFLIYSECSVNLIVTNILTHLSLPPPT
>CR1-5B_Crp_pol#LINE/CR1 1933-4839[Crocodylidae]
LASPGEGAAGRRGDTTRARQVTNARSAQVRNRGPDSLPNRGVAHAARQGLKCLYTNARSMGNKQEELALRIASSDPDIIG
LTETWWDSSHDWAVSIRGYRLYRRDREGRKGGGVALYVKEQYTSSASRMGSEEGQAEVLWVKIQGGRGERDLTVGVYYRP
PNQGEELDREFSGQLAEALKARDVVVMGDLNYPDICWEEQSARSDRSRRFLAEIQDLHLIQEVHSPTRGNALLDLVLATG
DDLVRGLQVLDHLGDSDHRLLEFTIQRRVSRACSKAVALDFKRANFNELRRLVGEALGFSRAGELSAQDEWSFLKETILR
AQGVTIPTRSKGGKSARKPPWLTKGVRECLIAKKAAYNRWKGGAISKEEYTSSARACRGAVRKAKADIELGLASKIKDNK
KSFFKYIGRMKKAPGNVGPLQDXLGNLVVAPEEKADLFNQFFTSVFLXRDRDFPTVMQDGLEGNASRPQVGEDRVRELLE
GLDVFKSAGPDALHPRVLRELAGVIAGPLARLYERSWCSGQVPDDWKIANVVPIFKKGRREDPGNYRPVSLTSILGKLFE
KIIKEHICDGPASGMMLKGNQHGFIRGRSCQTNLIAFYDQVTKALDAGVAVDVVFLDFSKAFDTVSHPILIKKLGDCGID
AYTVRWIADWLKGRTQRVVVDGSYSTWGEVGSGVPQGSVLGPALFNFFISDLDDGVKSNLFKFADDTKIWGEVSTLVGRE
RLQQDLDRLQGWANKNRMRFNTDKCRVLHLGSSNQQHTYKMGNSLLESTEAERDLGVIIDSKMNMGRQCEVTVGRANRTL
SCIHRCISSRAKEVILPLYATLVRPQLEYCVQFCAPHFRRDVDNIERVQRRATRMIRGQQGRPYNERLRDLNLFSLHKRR
LRGDLVTVYKLTRGDQKGLGETLFPLAPPGITRNNGHKLLESRFRLDIRKNYFTVRAARIWNQLPREVVLAPTLGVFKRR
LDAYLAGVI
>CR1-4_Gav_pol#LINE/CR1 1052-3979[Crocodylidae]
LRSPGDGRTITSASPGSDNRRISRSGNTRELTPTPAQGRDSSKRTGKPRASDGRLSCLYTNARSMGNKQEELALLLSKNE
YDLIGITETWWDSTYDWTTGIDGYTLYRRDRVARKGGGVALYVKEQYTSLQAEIGTQGGRLETLWVRIRGERGEGDITVG
VYYRPPNQEEELDHEFARELAEAARSRCMVVMGDFNHPDISWEEHSAKSDRSRSFLTCIDELYLTQEVYGPTRGKALLDL
VLAKGDDLVSDLRIEGKLGDSDHELITFSIHRKAGKSVSNAEILDFRKADFHKLRRLVVEALRDHDLTGRGVHDEWSLLK
DAILKAQGKSIPARRKGSKRAGRPPWLNRELMDLLNLKREAYKGWKSGNTTKEDYAALARTCRERTRKAKAETELKLATG
IKDNKKSFFRYVGSRKKNKGNIGPLLNQMGQLTTDTQEKANLLNDYFASVFHQPKGITLPDRTQDYQGKGDHTPIIGEDL
VREHLERLDIHKSAGPDGMHPRVLKELADIIARPMARIFENSWRSGEVPEDWKRANVVPIFKKGRKEDPGNYRPISLTSI
PGKILEKIIKETINNRLTEGNILRDSQHGFVAGRSCLTNLISFYDQVTHHLDKGEEVDVIYLDFKKAFDLVSHDVLMVKL
GNCGLDNLTVRWLGNWLRGRTQRVIVDGTESTWRMVTSGVPQGSVLGPVLFNIFINDLDSGVRSGLAKFADDTKLWGSAV
TLEDRLAIQADLDRLARWADQNLMTFNTEKCKVLHLGRKNPHHTYRLGSATLTSTTTERDLGVMIDHKMNMSHQCDAAAG
KANKTLACIYRCISSKTQEVILPLYSALVRPQLEYCIQFWAPHFRKDVEKLERVQRRATRMIRGQENRPYEERLRGMGLF
SLEKRRLRGDLVAAYKYIRGVHQELGERLFTRAPQGKTRSNGHKLLEDRFRLDIRKNFFTVRVSRVWNRLPPEVVQAPTL
DTFKKRLDAYLAGVI
>CR1-3_DT_pol#LINE/CR1 1660-4491  [Drosophila takahashii]
LNRSISVAYQNVRSLLGKLKRVYSNSTLLDFDIIAITETWLNSTVYDQEIFVNKFSIYRLDRPTRGGGVLIAVLNSHSSE
LFPYDNIHSIEFIAVKITTDKCNVFLTCSYIPPGSDPAIYLHHLSAISVVSLSVGDADQLIVLGDFNLPHLSWLPNSDSN
ILFPENQHEFVDGLTKLSLGQVNSIKNSRERILDLIFVSDVSVATVSRCDPVSTPEDLYHPALCLNVDINFETTNQSAPQ
RVKCFRKTDYIGLNSHLDRLNWSTLYSFTDLDSAVLWFNESVCSALDTFVPEVSVANSLKPPWFSRHLSYLKNTKSRLFK
KYKKSGSPSDFSQYVIARSNFVISNNQCYAEYIAECRQNIRSDPKKFYSFVNSKRKSNVFPPCLHLGNISESSDINISNL
FATFFQSTYSSLSFNTSTSYPYALPHINNIHIPPFTISDVLNSMLTIDESFSAGPDKIPSCIIKQCAASLCGPITFLFNL
SLQLSLFPSIWKTSFLIPLHKKGSRTDVGNYRGIAKLSAIPKLFERLVTCQIQHMCSSIISTSQHGFVKKRSTSTNLLEF
SSLIHCSFLQKKQTDVIFTDFSKAFDSVNHSLLLHKLSLIGFPPYLLDWISSYLSNRSQRVLFKNEVSSLVNVTSGVPQG
SHLGPLLFILFINDLPQVMSHCTTFMYADDVKICMSFSNLSSHLLIQSDLNNFQAWASTNLLSLNYSKCKTMSFSRTTAH
TTSYTLGNSLLERVEKINDLGVLFDQKLCFNSHISVIVTKATGVLAFIKRWAKEFNDPYTTKSLYVSLVRPIMEYCSEVW
SPQYVYQQNLIESVQKQFLIFALRNLNWDPDRHLPPYLSRLKLIDLNTLKHRRFCNGVIFIHKLLSGAVYSPTLLRDINI
AVPSRYTRAFRPIRLPIVRSNFSLHEPFRVLCTNYNLAYQCISFESSIDFISPQIYCYLDSLNV
>CR1-2_AG_gag#LINE/CR1 256-1506 [Anopheles genus]
MASVICKKCEGAISNDPIPCFGLCEHYYHDKCIGLSTPLLRDFKKSQNLFWACADCAQRLRAVDTLRFSHGLSRDAAYLL
ESLQSDFRDTSRSVQAASAGLRLELSSSLDCFRNEIALMKQESASSIRSVKDFIDSLTASHSMERNYSQAPLLTTLDEVK
HGIKELDLMHRELLTSFNSLMNKLNSHLATHTTTSSAHHSAIPATHSTTTIPVAASKLTHQAVGENPSKRRLLDRSPDPS
PTNTVTRAMLSSGTGLSCNNITTVPERPPRTWVFISRIAPDTPIEAIREMACSNIGTDDILVYSLVRRDRDLSTLSYVSF
KIGVPDSHRAIALAASTWPRGISFKEFIDLNPRSVNVWRPTTAASHAPSAPVTRESDHHSSPPSINHTTQLRNADFTISP
DHGPMSLPYTQYFQQA
>CR1-1_Gav_pol#LINE/CR1 3-2677 via tfasty with CR1-4_Gav_pol, 3 frameshifts. [Crocodylidae]
LSCLYTNARSMRNKRTDLTSNTTSSTYDWTTGIGGYNLYRRDRIGRGGGVALYVKEHYTSLEVKIGCKEGRLETLWVKIR
GERREEELIVGVYYRPLTKNSLENWQRLHGIMGDFNYPDISWDEYSARSDRSQSFLTCIEELYLTQEVYEPTRGKALLDL
VLAKGDDLVSNLRIEGKLGNSDHEMITFSIHCKPGKSASRVEIPDFRKADFHKLRRLVGEGLRSNGKGIQEEWSFLKEAI
LKAQRKSIPSHKKGSKRAGRPPWLNREVMDLLKLKREAYKGWKSGTTTKEEYSAAARTCREQIRTAKALTEHKLATRIKD
NKKSFFRYVGSCKRNKGSIGPLINEMGRLLTDTQDKTELLNEYFMSVFHQSKGISLLDRIQDDHGGGDHPPIVDVDLVGE
HLQRLNIYKSAGPDELHPRVLKELADVIAQPMAKLFEDSWHSGEVPEDWKKANVVPIFKKGRREDPGNYRPISLTSIPGK
ILEKIIKETITHRLTEGSILKGSQHGFIMGRSCQTNLISFYDQVTCHLDRGNEVDVIYLDFKKAFDLVSHDVLMVKLGKC
GLDYFMVWWLGNWLCGRTQRVLIDGTESSWQRVTSGIPQGSVLGPVLFNMFINDLDSGITSNLAKFADDTKLWGSVVTLK
DRLAIQADLDRLMKWADLNLMSFNTEKCKVLHLGRNNPQHTYRLGSALLASTTTERDLGVMTDNKMNMSHQCDAVAGRAN
QTLACIHRGILSKAKDVILPLYSALVRPQLEYCVQFWVLHFKKDVEKLKRVQRRATCMIRGLETKTYEERLRDLGLFSLE
KRRLRGDLVAAYKYIRGVHQGLGEHLFTKAPQGRTRNNGHKLIEDRFRLDIRKNFFTSRVPRVWNRLPPEVVQSSTLAIF
KKRLDAHLAGII
>CR1-2_AG_pol#LINE/CR1 1559-4549 [Anopheles genus]
MEANPASNTHNPSDSLPPLITCSESTPGASRSLIPSIDRLNIYYQNVRGLRTKLDELRLSLSELDMDVLVLTETWLDGSI
PSSLISEDAYVIYRCDRNSLNSNRCRGGGVLIACSSVLNTSTLSLPFDSLESVWTIVKLQNLAIYIGAVYIPPDLRSSEV
VLDDLHESVSFVAGKLKPNDLMVLLGDFNSPSLSWQPSASCVNQFIPTGVSRENVSLLDGMSVNGLLQLSGIKNIRGRQL
DLLFANAAFLECCSPVIASPVPLVALDNHHPALETSVLLTHSRPASSQRIPTARMFNFRKLDYQKLHRILADTDWSFIDA
DCDINQAVAAFTNVITSAFPSCCPLLKPAPNPKWSNRALRLLKSDKNRAQRAYRLNNTLHNLCVYKYAAKAYRLLNRHLY
RRYVRRLQMRFTIDPGSFFRFANSRRGSASLPSTLFLDLSSATSNPDICNLFAKHFSSVFVDPSTFKVPLDVGLSYTPSD
VISCNSVVVSESLVKSALSKLKTSFSPGPDGIPACVLKKCGNTLTPILTRLFSRSLSVGIFPSQWKLAWLVPIYKKGDRT
LASNYRGISIICACSKILESIVHLSVMPCVKNYISTEQHGFMPNRSVSTNLMCFLSSLYHYLSSGKQVDTIYTDFKAAFD
SIPLSLLVAKLRKLGFGGSILPWFNSYLENRSYAVKICGSFSECFLSSSGVPQGSVLSPLLFILFLNDCTSILPPNGFLL
YADDVKIFLPVSSTADCLVLQSWLCKFSTWCASNGLVLCPEKCSVLSFFRSSTSITHAYSVCDAPIPRASLSKDLGVFFD
PSLSFKEHTDYVINKANKSLGYICRMSTEIRDPFCLKSLYCCWVRSVLEYACVIWSPVQLSLLQRIERIQRRFTRIVFRR
SLGHHSIPLPSYDDRCTLLGLAKLEHRLSVAQASFVAGILLNTIDTPSLLSRLHLYAPCRTLRYRFRLQLPICRTRFARN
EPFVRAMSSFNSTSDLFDFNISYPVYRSRLRSFSVP
>CR1-3_DT_gag#LINE/CR1 617-1660  [Drosophila takahashii]
MSVVICSAKKCEFNGVIIGDNYLSCWLCDNCAHVKCAGMGQNGRVVDLILKRCGLTWFCPTCLVLTQEMKAFMRQTRNAL
AEFRKQLTSSFEIFSTMETQFLDCKLLNESPKRKIANNNKNSLQIPSPCTAAVGIPSPISASLNSILAVNNSAGLGTSGL
QSSFAFNNTSPGSEPGASGLQPNQNTGTTAEGSLTPQQLVPGPGSLHLNPDLATTIAPAALPSSQPAANQLLSAXPLSGV
APRSNAADLPLRGIAPNRSVFVSRLNPEATADCVKNYLCQKLGAQPSSISVFKFNFKQPRDISSFKITLPESMFSNALDP
TIWPEHTIMHEYIRKGASQDPNSVDAKN
>CR1-3_Crp_pol#LINE/CR1 246-2999 via tfasty with Plat_L3_pol, 1 stopcodon. [Crocodylidae]
MYTNARSMGNKQDELEAAACEKNYDLIGITETWWDSSYDWNVNMEGYTLFRKDRVGRKGGGVALYVKNTYTCSLVQEEED
SKAECIWVKMKGERCSTNIMVGIYYRPPNQEEEVDEALFKQVTNLSKSYGMVLMGDFNFPDICWKNNAAKHKMSSRFLTC
VEDNFLFQKVEDTTRGSSILDLVLTNREELVEDVKVMGNLGGSDHDMIEFQILRQGKHEVSKIRTLDFKKADFIRLKELI
GMVSWEDRLKDKGTQEGWELLRGTVLEAQQETVPTRWKHKKNGKRPMWLHKELLKCLKCKRKAYRQWKNGQVTKEAYQEI
ARTCRDKIRKAKIKNELHLAKEVKDNKKRFCKYVGQKRRTKEAVGPLLTSQGELLTEDAKKAELLNSYFASVFTKKLSCS
QTPNKDYLDKEGGKLREEITKEMVRELLLGLNEFKSAGPDELHPRVLKELAEEILEPLAMIFMKLWEMGQVPEDWKRANV
VPLFKKGKKEDPGNYRPVSLTSIPGKLLEHILRKAICKHLEEERLITSSQHGFMKNKSCQTNLISFFDKVTTWVDEGNAV
DIVYLDFSKAFDKVPHDLLINKLEKCGLDKTTTRWIDNWLNSRKQRVIINGSMSEWQEVSSGVPQGSVLGPVLFNVFIND
LDAGIESFLSKFADDMKLGRTVNTLEDASAIQKDLDRLESWARANRMKFNADKCKVLHLGRNNQKHKYKMGDTWLDGSTM
EKDLGVLVDHRLNMSLQCDAAAQKVNAVLGCINRSIRCKTREVIVPLYSALVRPHLEYCVQFWAPHFKKDVEKLERVQRQ
ATKMIKGLEGKSYEERLKELGMFSLRKRRLRGDMIAVFKYLKGCHKEEGKHLFSLAAERRMWTNGLKLQQSKFRLDIQKN
FFTVRTVRQWNRLPREVVDSPSLEVFKKRLDSHWSGMI
>CR1-6_AMi_gag#LINE/CR1 516-1436[Crocodylidae]
MPGGAGGAGNGGPHTCPAGARLRALEGQVRELQEEVSRLRGIREAEDEIDGYFLSLQGQAPKGEEPQEVPSTAEWQKVPS
RARAARGGAVPAPPVQLGNRYEALATLEEEEGEEETSGEEATPRTEQAEGGKLTRKKRRRVLVIGDSILRGTEGPICRQD
PMTREVYCLPGARIQDVTEMIPAIIRPTDYYPMVLIHVGTNDAARSSPDRLMKDYQALGGKLKETGAQVVFSSVLPVSGR
GRRHETCIREVNLRLREWCLEAGFGFLDHDPYFRTRDMLGWDGLHLSPKGKRVFSFRLADLLRRALN
>CR1-18_BF_pol#LINE/CR1 66-3596  [Branchiostoma floridae]
MSLMISRSVVFLLLFLNTIQASTIGHGPGKVRRTKPPCYMFPGGSAQPRPPLPSLWYPVLSLNDKEIASWQNLNFSSAGI
LLKQARYLRTSDRLCLLYICSVLMAQAVDLETNPGPRPPKYPCGSCGKAVTFKHKAVCCDRCDFWFHHDCQGLGSFMYPY
LSNSNVSWICLNCGLPNLSTTFFSDSRDLSSPNPFSPLSNDSPGMPQAASSPKSPVQNKHRSNARPLRLINANFQSLRNK
KVELETLVDQTKPDILVITETWLDSSCNISEYFPSHLNMQVFYRNRPEDSHGGVLIAVSNEFICTQEPHLETNCEMVWVK
INLVGSKCLNICAYYRPQVGDSVSLDCLEESMERICNKRNNHVWIIGDFNFPGWDWSDPQQPVLKPDCPYPGLHRRFMEL
LSDQNMSQVVDKPTRYDNTLDLVLMSNDNCVNSVRTLPPIGDHDLVFIEADLRPQKQKAKPRKLYLYKRSNWDKFRDEME
DYKTHFLELVEDDVDVNELYNNFTQKLSMCVDKYVPTKMSSGKKHLPYITPELKRMMRKRDRFYRKTIGQNSTERKDKLN
QFKKDINKKMKECYWKYIEDVVLDMDVTDPEQSHATSTSKQGTKKFWSFLKSMKSERAGVSNLRNEGTLISDNKEKADLL
NQQFQSVFSTEPPDDAMPDMGPSPHPPMKDINIDTNGINELLANLNPHKACGPDHVHACVLKELSSTLSPILQAIFQKSL
DTGSVPEAWKEANIAPVYKKGNRLDPANYRPISLTCICSKIMEHVIASTMMNHFDSNNILYDLQHGFRHSRSCESQLLSL
TDDLAHNRENGIQTDLIIMDFAKAFDKVPHLRLIHKLQFYGITGKTLTWIQNFLQGRSQTVVLDGERSDPVPVTSGVPQG
TVLGPILFLAYINDLPSHAAHAKVRLFADDCILQMSVKTKNDCEKLQHDINSICSWEKTWLMAFNPSKCEVMSVPASRNP
ITFPYSLHQHPLTKVSSTKYLGLHMSSNLTWGKHVEKTTSKANRTLGMLRRCLRISSTAAKERAYMALVRPCLEYGCSVW
DPHTKAQVSSLEMVQRRAARYVFNDYRRTSSVTSMLHNLGWQSLELRRKIARQVTLYKIINNIMYVPHTTMLVPVARCSR
RTNHSQTLQAIACRNNYYRLSFFPRTIREWNGLEPGVAEAGSLSQFKTELGRTLLH
>CR1-14_BF_gag#LINE/CR1 1-1098  [Branchiostoma floridae]
MATYASVTTLTTRSAESTMPMVKPAYMKYSEAIGREDRWLSTREICGAAEKIAGYETMEGAQLVGGLWRLYPKTKAARTA
LLAEGLTLRGKKIPLYDHNPYIVGGQGENNNPTTRVTIEGIPLSADDRDIVKTLERFGCKLRSAVMYEKDRDEDKKLTRW
KNGNRFVFIDIPAEPLPVKMTFGNFRGAVKHREQYHKKPEDMTCGKCLLKGHYSKICPNDIVCRDCGMSGHKRGDPGCHY
ITAVQQISSPSPEDVIEESFRLYVEPAATTSPDTSDNKDTSGNNTEVSQSTSGVPADESVSAPKSPLPKRDSKTRGRKRS
KAHARQQRDSERDDALTRLMKEARMRAVPASMPRKTSGSPTLHSS
>CR1-19_CQ_pol#LINE/CR1 2-4366 [Culex quinquefasciatus]
IXRTQRRXFLGXFKCCREHSGKSATPPVPTLNDADDAEFAARVCTAIDSKDTGACFGVDWRSGRFTHGSSDRITCGTIVP
TIPASFRSSSQHLPVRVLQSSPGRAVESLMRAPRLPDATTSSPRQRLRTPASRSHQSRPGAGVGVGGGVSQPAPFGKYPS
RSQHFLPDVRPTSSSCASTSATQTAIVSPPSFRAIQFSPGRAVESPMGAPRLPDATTSSPRQRLRTPASRSHQSRPGAGV
GVGGGVSQPAPFGKYPSRSQHFLPDVRPTSSSCASTSATQTAIVSPPSFRAIQFSPGRAVESPMGAPRLPDATTSSPRQR
LRTPASRSHQSRPGAGVGVGGGVSQPAPFGKYPSRSQHFLPDVRPTSSSCASTSATQTAIVSPPSFRAIQFSPGRAVESP
MGAPRLPDATTSSPRQRLRTPASRSHQSRPGAGVGVGGGVSQPAPFGKYPPRSQHFLPDVRPTSSSCAGPSATQIANAST
LSATVPSQLANDVQPQRPGSVDRRDSSLLTIYYQNVRGLRTKTNQLHLSLSSCDYDVIAFSETWLNAKIVDSELSSDYTF
YRADRSRETSVLERGGGVLIGVKKRFHPEPIHLRGGEKLEQIAVRIPLPGKTLFVCCVYIPPNSDATIYTQHSSCVQQLC
DLAQGPDEVIVVGDYNVPNLTWHFDEDINGYLPSGQSTEQEVALIEDVLGTGLQQMFDLPNANGRLLDLALVSDSSRFQL
IEPPRAILKVDAHHRPFILVLETQSTGTAAEQSGTYYDFANCDTMALNNSIASLDWANLLLVGSVDDIVERFYDKLNEII
REVVPLKHRRPHPNSHQPWWNRETRNLRNRLRKARKRFLKHPTEMLGRELADRELHYEMSLEAAFRGYISGIESNLKREP
KSFWAFVKKRKQDKGIPQDMVYRDSSASTPDDSVQLFADFFKTVYSANQPTTSNESLDKILPHELHMPLVCLTEEDVRKV
LASTDASKGPGPDCIPPSIVKQCAATLANPLAIIFNRSLESGVFPAKWKVASITPIHKSGNVHNVENYRSISILSCLPKV
FEKIVHEFLSRAVQPIISACQHGFMAKRSTTTNLMTFVTDVLRSMESRCQVDAVYVDFAKAFDRVPHQLAVEKLRRLGLP
EWITTWLHSYLTSRSAYVKLGGSKSGLFMIPSGVPQGSHLGPLIFLLFIDDLCHWIKNDKVLYADDLKFYRTITSPLDCL
ALQSDIDSLMRWCDQNGMEANAKKCQVITFDRKLRPITHAYMMGISLLDRVCSVKDLGVTLDRKMTFNEHITSVTAKAFA
TIGFIRRNTTAFKDIHALKALYSALVRSQLEYAAQVWAPYHNVHIARLERVQRAFVRLALRTLPWRNPPEQTSIEDRRRL
LGLDTLLKRRQRMQQLFIFDLLTKRLDCQKLSQLLIVYVPPRNLRRNPSMFRLSVHHTVYGHNQPFDVCCRLFNVVSDRF
VLNMTKDSFKKLISC
>CR1-28_HM_pol#LINE/CR1 841-3858   [Hydra magnipapillata]
LYDLKDKNSNHCSYSHVNVLGNAVFKFKGGPTSIPSLEKSRNNNPHKNHIKLWYTNATSLNNKMQQLKAYLSCDKPDIIL
VSETWFNDKSVINIDGYNCYNKNRPLGENGGGVVIYAKSTFITTSVSHLALCDNGIEQIWCSLTNGPDHLLIGCIYRPPS
SPESVNTKINSVLGIAKSLVDQKKYTGLIITGDFNYPHIKWYKDGGTKLKQNCDISIKFIDNLNENFIEQCIFGSTFQIS
DXEPTNTLDLLMTDNCKRIRDVEIGAPLGPIEKAHYVIQFKYDMQGADTIPIQFNSKDINYQKGDYEKINLGFNLINWYE
LFKDLNVDHCYSAFVQKYNELIELNIPKKRARFDQKVKKDPCITIEVKALIRKKKNLWNQLRAGKFKYLNKLNEYKAVKK
LVKSKLKESTIDYEKNLINNAKKNPRLFYKYAKKNQKNIGKIQSMKNYANVLTSDRHEIVNILNKSFQSVFVKEHGEIPE
FVPRITKPFEWDWKNVVTNEAVQQKLYSLDVNKACGSDGISPYVLKNCSSSAATPLALIYRKSIETGKIPSKWKEANITP
IFKNGNTTDPLNYRPVSLTSVPGKVMEAFIKEAIMTHLMENKLLSKNQHGFVKNKACVTNLLETLDILTASMSDSLAVDM
IYMDFAKAFDKVPHKRLLKKCEAYGIKGVINDWISSFLKERRQRVVMGVDVSPWLEIFSGVPQGSVLGPLLFLIFVNDLP
SVINSNCKLYADDSKLIKVIKNVEDHESLQNDINEFVKWTDIWLTKLNIEKCKVMHLGKKNPRMSYCMNHDGKEYKLKTT
VSERDLGVIISSDLKWHDQVTSATAKAQRTLGLIKRTFTYFDVEMVKSLYTTFVRPLLEFAIPAWQPYLQRDIDELEKVQ
RRATKLVPQLKKISYEKRLKAMGLTTLEKRRARGDLIQQYRFKQNIDQINWYKNPKPASSVTSSGPAFSVRGNKYRLERE
YVPSCLPRYNFFTNRVCKNWNLLPNEIIEATSLNVFKARIDKHFS
>CR1-28_HM_gag#LINE/CR1 181-840   [Hydra magnipapillata]
MVNAQEFNAYKAQQEQIIGDLKLQIEKLITDNMNLTKRVDDLEMNKSSTSHINNNVTWANMVKKSPEQMLMINSVTSETK
ERERRENNVVIFGIKPSENEEKSKEKEENRRAIINVFKKLQVTVNVQNFMKLKPRNTNNQAPFVVILKDKRERNSILKKA
KELRDSKEYENVYINPDLTESERFKSKFLREECRKKNKENIENEFYYGIRNEKVTKIKK
>CR1-9_DTa_gag#LINE/CR1 298-1467  [Drosophila takahashii]
MSLSCSAKKCEFNGVIAGETYLLCWLCENTAHCKCAGVGVHGRIGDLISKRIGFLWTCSACREITDEMRSFMRQTRTGFR
EIKKLFSHLHEKLIAVESQFNGLKIIKETPTKLSSPPTGQLMNHLTPTIPPSSVRDPGSSNSSLMYASLVSANASEIDKN
CVSSNNLVPPLPGPLLLCPTMESAMSPTRLAIPAPVLNFVTPKSICADLAPGSHPEPDPGAVQFNLPQSANAVPSVSSVI
TAPPVSSGQVTSVVHNVHNGPGSSKRNRRPLLAAVNNGHPAGANRRRLEAVAPQAIMPKKAIFVSRLRPDTTIDEIKGHL
SDELQASPENFVVTKFNFAYKRKVSSFKIILPDTHFSRALNPALWPVNTIVHEFDRKEPSINTNPSVPKN
>CR1-7_AMi_gag#LINE/CR1 3-745 via tfasty with CR1-6_Gav_gag, 1 frameshift. [Crocodylidae]
QTPGRGQDCRSPEADTEGWMTVTSRARPLAAETDPLVQLGNRYEALAALEESAVEETAWEEPQSIPEQAEGQTSYRRKRR
RVIVVGDSLLRGAEGNICRPDPMAREVCCLPGAKIQDVTTRIPDLIRPLDYYPMVLIHVGANDAARSSPDHVMGDYRALG
ARLRETGAQVVFSSILPGRGCSRHHSACIREVNLRLRSWCHHEGFGFLDHDPHFLARDFLGHDGRHLSAKGKSLFSNRLA
DLLHRALN
>CR1-6_Gav_pol#LINE/CR1 1265-4174[Crocodylidae]
LSTTGDGEAGDGESLEPTNCETCSSTPQVSTKGPFGHQNGGAPKAPFGGLKCLYTNARSMGNKQEELALLLADNNFDLVG
LTETWWDPTHDWAVHIEGYRLYRRDRVGRKGGGVALYVKEHYTSTLIKMGSEEEKVEALWVRIHGGRGERDLVVGVCYRP
PHQEEKLDLEFLRQLSEAVQSRDVVVMGDLNYPDICWEEQSAKSNRSRRFLTCVQDLHLTQEVYGPTRGNALLDLVLATG
EDLVGELQIRGHLGDSDHQSIEFTIRRRVGKITSRVEVLDFRKANFSVLRSLVNDALQDKSIGEMGVQEGWSFLKEAILR
AQRETIPVRGKRGKGAKKLPWLNREIQGSLRAKKKAYRRWKQGEATKEEYTYLARTCREAVRKAKATTELRLATQIKDNK
KSFFRYVGSKRKAQGSIGPLLNKKEQLVTDRGDKAELFNEFFASVFLNRAQDKSPNGFLDGHQRDTSPPTVDADLVQSHL
DGLDVFKSAGPDELHPRVLKELAGVIAEPLARLFERSWRSGQVPEDWKRANVVPIFKKGRKEDPSNYRPVSLTSILGKVF
EKIMKDHICGSPAGKIMQQGNQHGFVAGRSCLTNLVSFYDRVTKCLDAGVEVDVVFLDFSKAFDTVSHPILINKLRGCDI
DVYTVRWVANWLSGRTQRVVVDGSVSTWKDVGSGVPQGSVLGPVLFNIFISDLDVGVKCTLSKFADDTKLWGEVHTPEGR
ERLQADLDRLEKWAVHNRMQYNKDKCRVLHLGRKNIQHTYWLGSDPLSSTEAERDLGVIVDSKMNMSRQRDEIISKANRT
LSCISRCMTNRSKEVILPLYAALVRPQLEYCVQFWAPYFKKDVDRLERVQRRATRMVRGLQDKPYEERLRDLDLFSLRKR
RLRGDLVAAYKFIRGTQQGIGDALFTRAPLGVTRNNGHKLTESRFRLDIRKNFFTVRVAKIWNGLPREVVLSPTLGVFKR
RLDRHLAGVI
>CR1-7_NV_pol#LINE/CR1 371-3475 [Nematostella vectensis]
MSCESYQRYVNDSKLTWICNTCMFPNFSSGYFFNDIHVADNNSYALLADSSSEDISITTNYSELPCCISSSTPVWSTSRS
TRNSSKLSCMEINCNSIKSSERAAIFASHVSAHKPDIIFGCESKLSPEDTTSASFPSDYNVFRKERSGSDGGGLFIAVKR
DIPSYELPTIATNPEDESLWAVIRCSNKKTVYICAFYKPPEAPSSRLDHLQESIFKVFSQNNKSHPNIVISGDFNCGDID
WQSDPPSPTNHVTAAMMQKLLDLISNNAFTQFVTKPTRPASLKTLDLVLSSSPALVSDITIHPGMSDHDIVKFSINTRAK
RIKSPPHKVYLYKKMDIEALQQEMARAAEEFSRHCTERSLEENWSFFEDRLKSAVETHIPHKFTKSKKSLPWITKSVKRQ
MRKRDRLLSKALKTNNKNSKAWCAYRCQRNFVVKLLKSSYNYYLNTVIGGSLESNPKKFWSHVKHSRTESCSIPTLRQGD
SMYISDKDKAEALNKYFESVFTQDNGASPDLRPTTCTSIQDIIFTQAGVHKQLAGLNVSKSSGPDGISPRVLRDLAKELS
GMLCFIFNQSYNEGTLPAIWLNAMVVPIHKKSAKDLPENYRPISLTCISCKIMEHIVLSHLNKHISSNNILSIFQHGFRA
GLSCETQLVLTFHDWATVLNHHGQVDALLLDYSKAFDKVSHPKLLKKLSYYGIRGKTLAWISGFLNKRSQYVAVNGTHSD
KVQVTSGVPQGSVLGPTLFLLYINDICKASNSQIRLFADDTIIYRPITSMDDHTALQDDLDNVLDWSAAWQMEFNVTKCY
LLSVTKKRRPSCYQYTASTESFAQVSDQDYLGVRCNEQLRWGPHCAKIATKANRTLGAIRRTLKPCAPAVKERAYLSLVR
PMLEYASTSWSPYTDTDVLRLEQVQKNAARFVCNNYDYQARSSELVNQLNWDTLEIRRLYHQIVLLYKFYNNLVACPLPS
CVVPTNRSTRRHSLSFQQLHSNILSFNYSFFPRAIRAWNLLPDNIVNLSNLESFKTAALPAIRQLKVPPHLRRL
>CR1-8_DTa_pol#LINE/CR1 1509-4337  [Drosophila takahashii]
LDNIFSIHYQNVRSLLGKLSQIHTNSAAFDFDAIALTETWLNSSVFDHEIFIHKFTTYRRDRPSFAGGVLIAVKNDFSSE
LFPYANNDGIEFIAVKVRVGATFIFLTCSYIPPCSDISVYSSHLSAIQLVMSALGCADSLIVMGDFNLPLVSWLPCDDTN
FLLPNTTHDFIEGITDLSLVQINSVKNIRDRLLDLIFVSDSSLATVSRANPISLPEDPYHPTLAISVEFSSPSSDSVTAC
PAKCFRKTDFNGLNLHLSGIDWSFLYAFQNIDSAVHAFYASILSALDTFVPEVTITSTSKPPWFTRNLSYLKNKKSRLFK
KYQKSGSLVDFAQYSSTRSQFLTTNSQCYMNYLSQCKENFRTDPKQFYSFVNSKRKSNAFPSSLRYRNSAESSNLGISNL
FASFFQSTYSTQLYVPRCPYPYNLPHANNIFLASFTEGDVLDGLSSIDNSYAAGPDMVPSCILKKCAQNLARPITHLFNL
SLNQSCMPVIWNESYIIPLHKKGSRSDVENYRGIAKLSAIPKLLEHLITHQLQHLCSSLISPSQHGFFKHRSTTTNLLEF
SSIINRGFQSRLQTDVIFTDFSKAFDSVNHSILLLKLSHLGFPPNLLKWIASYLSNRTQRVLFNNVFSNVVNVTSGVPQG
SHLGPLLFILFINDLPQVILNSSILMYADDVKICLSYSDWYLHTRLQLDLDEFQNWCQNNLLFLNHTKCKVMTFHRSSPH
LVSYSLGNHTLDRISVTNDLGVLFDHKLCFNNHIAAMVNKAKGVLAFIKRWSKEFDDPFTTKTLYVSLVRPILEYCSCVW
SPQYMEQQAIIESVQKQFLIFALRNLNWDSGRLLPPYRSRLQLIDMPSLYHRRICNGVMFVHKLLLGLVDSQTLLSYIDL
TVPSRFTRTFRPLRLPLCRSNYAQHEPFRVLCHNYNTLSDILSPNVTLSSLPCKIYNYLNSNM
>CR1-7B_Gav_pol#LINE/CR1 2-2626[Crocodylidae]
XGYRLYRRDRIGKRGGGAALYIKEEYTSSSISKESGEGHSEVLWVRVQGSQGERDLTVGVYYRPPNQGEELDQEFLGQLT
EVVKAKDVVVMGDLNFPDICWEEQSARSERSRRFLDRVQDLHLTQEVHSPTRGDALLDLVLATGDDLVRGLRVLDHLGDS
DHRLLEFTIQRKVAKACSKAAALDFRRANFNELRRIVGEALRSRRGGEPGVQGEWSLLKETILQAQRKVIPTRIKGSRRA
HKPPWLTKSIRECLLAKKEAYTQWKEGVITREGYSAVARGCRGVVRKAKAEMELGLASQIKDNKKSFFKYIGGKKKVPGN
VGPLQDALGNLVVTPDDKANMFNDFFASVFLSRDQNSHLPAGPPSGPGGGTPGPRVSEDLVRELLEGLDVFKSAGPDDLH
PRVLKELAEVIAGPLARLYEHSWCSGEVPEDWKRANVVPIFKKGRKEDPGNYRPVSLTSILGKLFEKIILAHIQEGPAGD
CMLRGNQHGFISGRSCQTNLVAFYDQITRSLDAGVAVDIVFLDFRKAFDTVSHPVLIKKLGGCGVDTHTVKWVANWLEGR
TQRVVVDGSFSTWKDVGSGVPQGSVLGPALFNIFISDLDEGVKSTLFKFADDTKMWGDVGTLEGSNRLQSDLDRLQGWAD
ENRMGFNTDKCKVMHLGRNNRHHTYRLGNSPLVSTEAEKDLGVIIDSKMNMGRQCGEAVRKANRTLSCIHRCISSRSREV
ILPLYAALVRPQLEYCVQFWAPHFKRDVDSMERVQRRATRMIRGLQGRPYEERLRDLNLFSLQKRRLRGDLVACYKLVRG
DQQALGESLFPRAQPGVTRNNGHKLAEGRFRLDIRRRYFTVRAARVWNQLPREVVQAPTLGVFKRRLDEHLAGVV
>I_Ele11_pol#LINE/I 1115-5671  [Aedes aegypti]
MPQPASPDRLRHRAQNNSPSTSLDSQGANVPDVLPQPESLGRLRRLEGNMDEELLFHFVHCPARTPGSQSPVSAAVSHSG
TGGHSLALGEDLEEGNQASEPTSLDDEGSEGSQAIGTRRVLPATPMDYAGSQVASTSSVEDLGHPGNPNPGGKSHXAVVS
SSDALLAPXSTVVAFTLDDVGSQGLQALGTHRALPVTPKDNAGSEATSKHRSIQALIPGNPTHRLSPLATPFFPAVGTSL
HLVGPSSGPAICRALSCSCTESDTEIPSDRHSTAIESPPLIVSSPSAYTVGRNVVHPCTNTTPNQTLSHPTPALPEPARF
CLQWNMNGFFNNLADLEILTSSDPPWILALQEVNRVTLEQLNRSLGGRYVWNLKRGSNFRHSVALGVLKSIPSAFFNIDS
QLPAIGVKVQGSTTMSVACVYLPCGNIPNLRGEVEKIIQQLPEPRMVVGDLNAHHPAWGGSRSDSRGNTLLNLFEDSDLT
ILNDGSPTFFNSRYSTAIDVTAVTRSEIGRFSWCVNSDPHGSDHHPLQISLAVEAPVTTRRPRWLYDQADWTAYNNSISV
SLRSRHPSNMVEFTAVLTEAAAVSIPKTSSKPGRKALRWWSPEIKKVIKARRKALRAMKRMAPDHPNRDVIVDRYHIARN
TCRQAIRDAKRACWEEFLDSINATQSTADLWAKVNALNGKRIVTPPTLDIDGNSTADPEIIADGLGKYFANLAAFGTYDP
VFVRQTGATANDINSFTVPEDNAQLPINQPFSFRELQYALSRSRGKSAGPDDVGYPLVKNLEGHGKLILLELINQLWTDD
SYPPEWRESFVVPIAKPSNQARDPANYRPIALTCCLSKVVERMVNRRLTHHLQQRGLLDHRQHAFRPGYGTNTYFAALGE
ALQEAKSLEHHTEIVSLDISKAFNRVWAPLVLEKLASWGFTGHVLHFVRNFLTNRTFRVVIGNTKSDSFREETGVPQGSV
ISVTLFLIMMNGVFQNLPNGVKIFVYADDIVIVVSGPTIAATRRKAQAAVTRVAKWASSVGFTMSASKSVRCHVCSSGHR
VSGPPININNQAIPIRKTAKILGVTIDRGLTFKPHFEGVRANCRSRLNLLRSLSRPHRSNNRNIRFRVATAIIDSRLLYG
LEITYLAMNNLIDALSPIYNRYIRIVSGLLPSTPADAACVEAGLLPFRFLVIITLCTKAAAIAERTAGNRRTRLMEEADH
QLENATGSRLPPIAKTHWCGERDWRSSNLKFDDRIKQSFKAGDSSIRLRKTVAEILRKDYSAHQRRYTDGSLSVRGVGIG
ITDENLATSLSLPGQCSIFSAEAAAILYAATVPTTSPIVIITDSASCFTALQSETPRHPWIQGIIKKAPCDVTLMWVPGH
SGVPGNATADFLAGTGPSGPRYSTRVPLADIRRWVKSTIRQTWQAEWANSRGAYLRKIKRSTDAWTDLNSMKDQTIISRL
RSGHTRMSHNYGGNPFHRSCEICDTGNTVEHFICNCPAFDSPRQMYGISGSIREALQDDLSSMAALISFIKDAGLYFKI
>I_Ele2_pol#LINE/I 1396-6006  [Aedes aegypti]
MYKQQHHQHGNVMTGETYKTISPNSDPDLATKTDTNTEERNLYQDARMDPSYKPTEHDSGHRSKNTLDYNNQHCERFEGG
ECVVPPSLPEEEASLAREAIRDVYLQPVDRQTSSSAAIKRKSSALPYNIVSNSAAYDQYNNLNCKPSSSSTSFDSPCARL
TTSTLTRDVPDFSDEPLAAVDVXKPTVSASIFTSRYLPVNHSILPNSPTNLGTNTATTQRRSNTTENKNNESFLRSHLHE
EPRRAKGKREVTYPLPVLEVDARGGRNDAYHERLAFLSPSQNPVEPNYTHTFTTDAAPNILHRHPRSPRSNSKSSDATIS
SNSXEQAVSPSFAMQWNICGLRSHYSELQMLIAKHQPVVVSLQETNIDHQRAPAKLLGDKYEFLFSSCSTHGRQGAGVAV
RRGSPFQRIQIQTRIQAVAVQLFAPTEITVVSVYLPPKDKNAINLLEDLLEELPKPVMLLGDLNAHHVAWGSTTSTAITE
AKRRGEAILELVVQNDMVVLNDGSHTRIDPVTGNSQALDISICSTSVAAKFAWKIQTDTSDSDHLPILIDLLSASSELHC
RSKWIYGKANWELFQEITSETLRPGNFLTVEEFTNRIISAAEASIPKSSTKRGTKSVAWWSEDVKIAVKQRRKRLRALRR
LGPEDPKRQEALKQFHDARASSRKIVKEAKQKCWEDFVESINPTSSASEVWNKLNRLQGKRTSNTLALNLPKGFTNNGRD
VAEALADEYETKSANSSYPEKFRRKHASNSNLYNKSQRPHLYKRYNTDLTIEELVWALDRKGGSSTGADNIGYPMLQRLP
ISSKTAMLELFNRIWNSGTFPERWKLATVVPIPKPDADRSRADGYRPIALLSCLGKVFERMINRRLTTELETNKKLDPRQ
HAFRPGKGVESHLAHLESLLSFENDEHVEIVALDISKAYDTTWKPGILRTLKEWKISGRMLNMLCSFLVDRSFQVSANGH
ISSSRIAENGVPQGSILSVTLFLIAMQPIFTKIPPNAEILLYADDVILVVKGSNRQLLRQIMNKTVRSVTEWANSVGFSI
APTKSKLLHCCRLRHRKRGRAIKINGASIAHVRKMRILGIMLDSNLNFKQHLASVKSSCSKRINILRILGCRLKRSSRFT
LLKAGAALITSKLFFGLGLTSRNIDDMERILGPTYNEVVRQSSGAFVSSPINSVMAEAGCLPFRLALIQRLAQLAVRLLE
KNPSAVNYPVVLRAKDFLRQTTGYSMPNVCSTLRNYDREWYAHSPYTENHVRNKIKAGTNSNIVIPTFQELISNQYQYHK
KTFTDGSKDADFTGVGVVMEDKEESYALPEACSVFSAEAHALMTAATIASEHHNTIIFTDSASCLDALQSGHSKHPWIQS
IERVSRSRSITFCWIPGHCGIAGNERADSLAKQARSKQKLDIALPAQDLIKNIRRKIWSVWELEWRQSVSQLRQVKCSPI
KYPDRKCASEQRTLTRLRIGHTRLTHSYLFNKSSPPMCNSCGTRTTVQHILTDCRLYAHQRSNCGITGSLCEILSYNPQR
ETAILQFLKDSNIYNEI
>I_Ele18_pol#LINE/I 1995-6554  [Aedes aegypti]
MTRLADLKLKSMSNAPTLYSSPLLMVMTKRCKVNHAYDLPALLFTNIELILSISSKLPMTNTHYNRAAHSHKEESTGTPT
TTNDTDINTHENRTTCEASGSRGPCSAAVFSRPELQDSSRHSNFPTVFETQKGSTAYTPQFPLYSSGSRGPVSAEVRPPP
EPADTPRHFRSSGRGTDKGHATHSPKDTVGAESLATNAQATTGSKNNQQSRRSARIRKRKSKISTPSADNENNLLSRIGL
DAASLAHDKTAPLPEAACNAAIYDAIHLLRYGIEIPQQSSSSYLPSKRISSVEQQALTVSRCTPRRTTTDMRNSNTRFAV
QWNINGFTNNLADLEIICKNNPPIALALQEVHRTNCQRLDRSLSGKYRWIYKCASNIYHSVAIGILAQLSFTQIELNTDL
PIIAVRLNAPFPISIVCFYLPCGNIANLEESLLNVWNEIPEPRILLGDCNGHHQIWGSPKSNPRGMTMVSVAESTGSTIL
NDGTKTFIRGQIESIVDISMVSATIANRFLWSASDDPMGSDHFPITIYLNEQPPATSRRPRWIYDQADWASFQTRMDSML
EANEPSNISDLIDTIHQVASETIPKTSSIPGRKALPWWSPEIKKIVKARRKALRRAKRIPDGNPQKEIAFSTYKILRNNC
RQSIRDAKHQSWTKFLDTINDQQTSAELWQKVNALNGKRSFAGLAINHQGVTTRDPSEIANILAEHFASMSAIGRYDHAF
VRINNVTMDSLSSFRIPPESHHEINLPFSLAELNFALQHGKGKSAGPDEVGYPMLKYLSESGRSLLLRLLNNEWTRKTLP
ANWKHSIVVPIPKNSGYSNEPDSFRPISLTCCISKVLERMVNRRLIRYLEDGNYLDHRQHAFRPCHGTDTYFASLGQVLD
DALNDNNHIEIATLDLSKAYNRAWTPSVLRQLANWGLSGNILHFIKNFLTGRTFQVLIGNHRSNVTGEETGVPQGSVIAV
TLFLVAMNSIFKSLPKGIFIFVYADDIVLIAVGKHPVALRRKLQAAVNAVNKWAHSSGFQLSAEKSARSHICTFNHRPPK
KAITIHNTPIPFKKSLRILGVRVDRRLTFNDHCSEVKRNCRTRLNLLKILSRPHTTNNRNTRLKISRATIESKLFYGSEL
TCRASDTLNRTLAPVYNNAIRIVSGLLPSTPAIAACVEAGMPPFNYALVTAVCRKAVSFLEKTCKSQSEVFILKEANRLL
ISVANQRLPPVAVIHWTGARNWRAPLPNVDLSIKNNFKAGDSSTILRSTFAHLLATKYAYHTQRYTDGSKARGAVGIGIL
SGNQNFYHRLPNMCSIFSAEAAAIYLAASLPSDDPIAIFTDSASVISALNSQSSRHPWIQAIQSILNINNNITFIWIPGH
CGIRGNESADQLAAIGRSNRNLYNREVPGSDVKKWVANTVRLAWSQEWHNRRNPFIRKIKGETHKWEDVPKLKDQQILSR
LRTGHTRLSHNMGGDTEFRRRCDPCGVHNSVEHFICECPIFNYPRELYNIGSIRDALKNDPSSESATICFLKDAELYNNI
>I_Ele25_gag#LINE/I 264-1895  [Aedes aegypti]
MAASSSGPPPTAWWDGPENDFGGNRVDGTHSGPTLPSFMDPEGFHGELHLMRMSGANGPLPNRPFVIRRSVEKFIGGKIE
GAFPEGRTSSYALKVRSQKQYCKLLTMSQLIDGTAICITEHPTLNSVRCVVSCRNVIERSEDELLEELKEQGIKEVRRIT
RRNGQSRENTPALVLTCRGTIRPDIVDFGYIRCRTRPYYPSPMQCFNCWLFGHTKLRCQAKXATCGXCSGDHPIAENREC
SHESFCKSCNAKGHKISSRDCPXWQFENAVQRIKVDQGLSYPSARRIVEQNRSGRSFASVTGPATTXIXQQTNVXSEEQA
TILAAKDAEIAELRAALAARSAPPAXANQEIEQLKAXVAEQAKQIEALTVQISVFLKAVMPAANLSCPSEPTATSIPSAT
STVVLPVSSKINTTTSMLSTTSDGSINTPSKNHHTNDRITGTETDSGHTGQNVLSDSDTASSDRSVNVEFYSPNPMKTMV
SPKTPKPTRTRTSLPSGSEITSDQVTPSVKRPISAVSRTESLFQLQKKTKKKASEGLGTIPKKR
>I_Ele24_gag#LINE/I 883-2619  [Aedes aegypti]
MATGLGGPPWGDYPPLSQDQGDSYHAGPTLPGFMDRDGFYGELRFLRIQGIDGRPLPEAPFMIRKSVHKSAGGKIEGAFP
ESGGKTYALKVRQLTFYQRLLDMKKLNDGTPIEVIEHPGFNQTRCVVSCREVVNVDVNVLLEEMQEQGVKEIRRILRRAG
GKQINTPTLIVTTRGTVRPEFLDFGFIRCRTRPYYPSPMQCFSCWAFGHTRSRCNSSPICGRCAQNHAFEPEHPCIAAKY
CKKCESSDHGVGDRSCPEYIKEGDIQRIRVDSNLSYAAARRKYEEAHGTRSYANMTAVPGFTSLNNQNDLASLHRKIDSL
IATIEKKDQRIEQLEAALAQRSSTAATTSVPNVSSQTGDDMPTFMKLFLDRQEQMFGNTVKKMWESNLRMQKDILELQSR
SELPSDEQIYLPAPLQANTASLSTLPTRMIAATKSTPTASAVLPNSTMESSEKSSPTPTNIKDKSNTDPLNNVTPNPVSP
ATKTIAIDDSSHDLNSDVSSNSSSSPNQNLLSHNSTPRPSPKTPVQSENIPKAPLRAVSPGSANKRTLRDISPDRVINAQ
TVSKQQRRSLPRSGHVKKS
>I_Ele2_gag#LINE/I 140-1429  [Aedes aegypti]
MTGKPPALMAGVPDDPIGSQRCGRTPGWMQSKDEMGQTMVLVLRCKVPENVTADPRLPEPFTIGTSVELAIGAKEARSVK
TTREGRGSRYLLRTNSKTIINKLQKLTELIDGTPIEIVPHPTLNTVQGIVYEPDSINTDEKMIEKHLIPQEVHTVRRIKK
RVNGKLQNTPLLILSFHGTELPEYVYFGLLRIPVRTYYPSPLLCFNCGSYGHARKSCQQPGICLRCSQPLHVTEGEQCAN
TPNCFHCNEEHPIMSRECSKYKEEDKIIHLKIDRGISFGEARRLYSEENRRETIARMIQNQLKQEVAKKDQLIATLQKQV
ADLAKEXAILKSAPQEPQPTFTKPSSLPPNSSVAPTRVSGTSRKTEHQSRRDKPFVSPSAEDNGTDDGIRTRSRSGKRVF
EISPTDSRGNRGKRVSNHPCTSNNTTNTET
>I-4_CQ_gag#LINE/I 407-1672  [Culex quinquefasciatus]
MSGGEGGMESDGEDDEASNVRTKIYPNGSTGPFIVFFRPKLKPLNLISITRDLTRKFSGVSEIKRVHANKIRVVVNNISH
ANEIVTCELFTLEYRVYIPSRIVECDGVVTEEGLTLDELYECRGYFRNPAVNPVKIIEVKQLFSSSTQDGKTVYSPSNSF
RVTFEGSALPKYIEIDKARLPVRLFVPKVMNCQKCKQLGHTTAYCCNKARCIKCGEEHDDSSCTQAATKCLYCDEDALHK
LSDCPTYKQRQEKLKLSLKQRSNRTFAEMLKQATEPLNSGNIYNILPSDETVADSINAGASTSGTGNSRKRNNGSPSIRR
KEIKLSPQQDRIPNFQPTPPGINPPGFPPLPRPPPLTPKPNPNKPKQGLIGFTVLINQILDALQISTGVRTVVITLIPFV
RTFLIKLSEQWPLISTIISFDG
>I-3_AC_gag#LINE/I 574-2112 [Aplysia californica]
MDSKKQKDPSPAPNVKKSRLAEAGAAAEPSKNSKKGKRTFTDASFLPPPKELLRQPYVAISSTKDAQRRITDLNLFKTGD
ALRKVLGYIPTCVQKLSCGALLVKCATEIEVTKLLDTTTFGGIQCKSEHYQKFNRSKGVVRSHELKGCSMEEIVEHCEGV
VEARRITLRRGETTIETNTIVLTFESCRPPATVRASYLVLDVRPYVPNPLRCFKCQKFGHSQSRCRHAAVCPRCGKTGHP
EKECKASPCCPNCHGQHTAFSKECPTWLQERAIQEYKARNGCSFQEARKVVCPPITTPVIGRSYSMATQMVTRSASNPTT
DLPKPAVNRQVSVPKNTRNKKPATIPVAPPFEVPLSNSYGVLGEDGEDSSSAPSSPPHPSSIISSSSSSSSSSSSSSSSS
SSTSQPIPLMECEVGLLPSPQPPPPPSQPPRSAPPPPTPPADKPLPMEEDISDPPPRPDPGKGGVCHSSKSPTRPPSNPG
RQPRKHSASPARRSQSVSSKPGPLSSKSKSKNS
>I-5_DR_gag#LINE/I 2-843 via tfasty with Nimb-3_DR_gag, 1 frameshift. [Danio rerio]
IKLTTILKNQVGEIIMAKVLRDGNLLIVCKSEEQRERAMKIKEIGKYKVSNMSKIGVGNKLSKGVIWGVPVGVNIEDLKS
NLRGGKITVRDGTRSDSEGILIFFDDEVLPSKVTLGYLSYRVREYIPRPVRCYNCQRFGHVAKICKGKKRCARCGGNHGY
HNGCVVMKKEREIQQIKTQNKITYAEAVRRIKQRERTEENPVLVRQNVEMQEEVGDEKILIEVKKLVTFIAGVINATMEI
KSKTERIQVIVKAAVHHLGVSGITWEEVRNDLNAKTSQDIT
>I-N1_CQ_gag#LINE/I 89-1471  [Culex quinquefasciatus]
MAAAAKADSDWTVHKTKDGKPFYWNKVTQESVWKKPDGFQEEKQPLTDKEVEKPDPPTPRVRKYQDAPGERWQVFFRPKH
KPLQTMRISEELWKHYPGVTDVTKLHQNKLRATVNNPKEANAIVCDPRFCIEYRVWIPARSVEIDGVVSENGLTVQQVLT
AVGHFKRRNLPTIPVIEARQMGTAEGEGASKRFVPSSSYRVTFAGTALPDYLVVDNMLRLPVRMYRPRVMSCSNCKKLGH
TKAFCSNKTVCGKCGEKHPDEQCQKEVEKCLLCGGQPHEVRSCPKYKTREDKLKRELERRSKRSFADMLKTVTTSAGSEN
PFSVLSEEEDDSSEDGTEDELIINAKGGTSKRKRKTKKKSNSDKSRSSTLPQPGSEKFNKAFPGVSSTKTSPKDPTNPAA
VVPQKDHGKDNRIPFSLLLEAVLSAVSGSTRTLLEPLIPFFKELGKILSENSALNAIISFD
>I-6_DY_gag#LINE/I 191-1471  [Drosophila yakuba]
MTDPPDIHXFTSKSYQSQLGNPKFIVIKRKDNNSFERISPFIIKKSVDFACGGEVEGCKRTRDGSLLIKTKNELQARKLL
KLTTIADVEVTATEHKTLNFSKGVIYCNDLRYIDEDTILQELKPQKVTEVKKIMKRQNPNSNSDSNNTTLIETGLIIITF
ESHKLPEILRIGYETVRVRDYIPLPLRCKKCLRFGHPAPICKSLETCTNCSEIKHTNDGETCTNEKNCLNCRNNPEINHQ
HSPLDRKCPTFIKNQELTAIKTTQKVDHKTAQRIYFERHGFQLRDSYAKTLTNGTTQMKTNTQAPNIDANTHTIQSQNSY
ITPTSTAHTTSSKTTTTGPAKTTPLSNQPLQHHHHHCYDKPEDMDTYHPTDHPTSTPYSSQHTEDLKIKIFSKDKSNNLS
TNLKASKIKAKTLNKKKHTNNSDSESI
>I_Ele33_pol#LINE/I 1677-6182  [Aedes aegypti]
MTQEPSFRKQNFAIEPDTIFGLSEHSMINNSTNNTNLHSTTASTFNNVIYATNTDTQTEQFSKTTIMEHKASSRFIAPSR
SNSDSPSARLPTSALTRDVPDESDEPLAAADVDCLLTQASTNTVFFTDENFRCLQPIPGLSHDECNSQAPSPNSCYRTTA
VRIASDSPSARLSTSALTRDVPDISDEPLAAADVACLYPQASKIFHSHHEIVPPRMRFFPDPTQLDALASLPREALVNAE
LYDHFRQVFVLPSTSSCNNRSGVAISPSNDSRNTANAENPTSQRDQETVQSTHDNFLGIVVPHASQKQLMLQWNIRGLWA
NHAELSNYVIQKKPIVVNLQEMKTSNTEIALKGKYDWKLADHNIRNGKGIVGLGVLKEVPHCFYDLHSTIPICAVRLHSP
YNVTIVAFYFPNNANVKDIIDGLNLVLETTDPPYVIGGDANAAHEAWGSSKTSVRGRSLLSWIVDNDFIVLNNGAPTFLS
DTHCSFSSIDITFASKCLAPRYLWEVLEDTMGSDHFPIITYLDATTAKEGCRKRWLYKDANWKHFEQCIDQLLQQNCDLD
IVQLGNLIREAAEMSIPKSSGKLNGKSEIWWTKEVDTAVKLRRKALRAMKRLNADDPLKEVLKKKFQIARANARKVILRA
KQASWEQFCETFTPSTSSSQIWTNFNRLCGKKKAVAKTMIINKTHVTDPNEIVEHFAEVFELNSKANYNISNEHAEAGTN
EQSFCTVEPSVLDNNFTMQELLRAIDSAKGYSAGIDEVGYPMIRHLPLHGKMRMLMAYNTLWNEGRFPEKWKEGIVIPIP
KPGQPQQHAESYRPITLLSCIGKIYERLINHRLMVHLESNDLLNQNQHAFRTGKGTTTYFADLNEIMTDALKRKLHCEFA
LLDLRKAYDTTWRPHIIQRVRELNLGINMTKSIESFLKDRKFRVSFGGALSSSKTQEDGVPQGSVLSVTLFIIAMDTVFN
VIPSGVTALIYADDILLVTVGKKVSSTRKRLSLAVKAVCEWAKWTHFEISPNKSSLLHVCREKHRNWKKNRKEIKINGES
IPDVKTARILGVWIDSRVTFKKHFKNTLNAIQSRINFLKAIASRANREVIWKIANATCISKLLYGIELFGLRCIEPYQSS
FNQLIRLASSAFRTSPSLALAIESGELPFKERVALAYIRSYCKIEEKSHQYRTAFRENIEQLSTTFFGEAFPQISKLHRF
GQRPWYYARPKIDWTIKRNFKVGEGAHKARAFVNGLLNSEYKQYTRIYTDGSKDEVGVGCGVIGVDFIIEGQLPSSSSVF
SAEAAALAIAVYHADNTPTVILTDSASCLSALEKGNILHPYIQAIETFSENKHVVFLWIPGHCDISGNVKADQAAKRGRT
GLALEFEVPAKDLILWAKHKMKDIVQSRWIGNTTDQLALVKRSIGKWNDKMKKSDQRVLTRCRIGHTRLTKCHLFSKNDP
DICDLCNSSLDVKHILLECRKFDDIRRRLGISSNISIALSNDQKEENKIIKYLKNTGLYNQL
>G_DM_gag#LINE/Jockey 129-1538 via tfasty with G6_DM_gag, 2 frameshifts [Drosophila fruit fly genus]
LVQPANLTVSLPLPTHSCVRVIGINSYIRLKLLRTTQQQPRAEAGTPTNGSYLPSSPPSLLRDNMDWQAPPRPTKLTKVP
RKKALKEAPGEGESSCSSDSSSSESEPGEVKRKAASRDAKEAADNVPNTSAALRKKLENNSFALLSSTEDEDDDDDNTDN
EQQTPVGESAPKTMKKPNPTPKTIKPPPIYIPDVTNISALVRMITTLVGAHKEFSYKTERNNNVRVMMPDKESYSAFRQQ
LVTQNKRHRTFQPVRDLHNPIGKKSKEPLGIFFVNLEPASNNTDIYKLKRICRSVVTVEPPLKFNDVPQCFRCQGFGHTQ
RYCFLEFRCVKCGGLHDSRACEKKEDEKACCLHCQADHPASFKGCPAYKKAKAQQAPKPKARSMESNNKPSFELPNITNG
MSYRDALSGTRKSQASTPPPTPPTPPEAPQPNHMEAMFTRFESLVERMMEKMFAQVTQLVASILNSKSCK
>G2_DM_pol#LINE/Jockey 159-2960 [Drosophila fruit fly genus]
HGTNVCSLRRNGRKDDGEDVLANDAACCFHPQRKSMQSLKIVIWNANGLQRSRAEVEHLLKTDAIDVLLVSETHFCPRSH
FSISGYDVIPANHPSGRARGGAAMLIRSGIQYTELPAFQEEWAQCALARISSLHGDITVGAVYFPPRHSITETHLQDFFE
SFGPRFIAAGDFNAKHSWWGSRSINPKGRTLHRFLQSRRLDCHSSGEPTHWPSNPSLLPDLLDFAISKGIGQDRLTCSNY
NKLISDHSAIKMLLNIPVLKKELPRRLTGKHTDASKFTLWMLSSLHPDPPLSTPSNIDAAIKTLTDEMYNAAEFANPPPS
TSPRTPGRDLHLWSPEIAAFVAEKRRLRRIWFFSRNPRDKAALNRAIKELKDKLCTLRQDSFDRFLEELEPGDPQHNLWQ
VTRHIRRPAKKASPVRKADGSWCRSEAERAEAFADLQNAFTPFDRCTGEERAATTRFLESPCPPSLPIEPVTPEEVAQEI
ASLKASKSPGLDRIDATSLKMLPPPCSQLLANIYNRCFSLGYFPRSWKRAEVILILKPGKPEANLASYRPISLLTILSKI
LERVFLRRVMPVLDEAGLIPDHQFGFRRSHGTPEQCHRLVARILDAFENKRYCSAVFLDVKQAFDRVWHPGLLYKLKSHL
PSSHYALLKSYTEGREFQVRCGSSTSTTRPIRAGVPQGSVLGPILYTLFTADLPIIPSRYLTAATYADDTAFLATATNPQ
LASAIIQRQLDALDPWLKRWNIMINADKSSHTTFSLRRGECPPVSLDGDTIPTSSTPKYLGLTLDRRLTWGPHINNKRIQ
ANIRLKQLHWLIGKKSKLREKLKILVYKTILKPIWTYGIQLWGTACTSHRRKIQRFQNRCLRIVSNAHPYHENSAIHEEL
GIPWVDDEIYRHSVRYASRLENHHNHLAVNLLDHSQSLRRLQRTHPLDLTQHT
>Helena_Ds_gag#LINE/Jockey 294-2033 [Drosophila simulans]
MDTNNETSNSQLRNKPIDYEEMRQVAGKSPLDIRMELLNQRSSCTESVNLSTITTTITFTSATCNTTSTTTAAISRPSSR
EKAATRLSDAQKLLTKERKRKTNLTPNHSSKRAVRDAKLEPYPAINSNSNSNNRFAMLDMELDETSDGIETPQVCHDVAS
TSCASAAPNIPNDDCVPNVTSNSPQQYTDKQNSYKQSKPPQIVLSLTNLNDLYELITEVTSLDNLTVKVNQGETVRILPK
DSDTYRAIVNLFDNSGIEFHTYQMKEEKPHRIVVKGLHHSTLTYEIIDNFKTYGFDVLQVHNPRSRRNREEKLNIFFINI
KTCAKINDIYDINTICRQKVRIERMRKSSEIAQCIRCQEFGHTAKYCRRHPNCARCGENHLTKLCVLPNDQQPICIHCGG
NHTASYKGCQFYQEYLRRSMGTVKKQQPKQAKFDKSATNQQQPQQKQQHAIASTPKDHTGSLSYADIARNGNTTAQPRLH
NVQLKGTNIKQQHPLDVQSILAQQQEQFMKWQQQLQQQQQQQFLSWLQQQQQEQQQQNKLNSQRLERLENIVFEMANMLK
QRTGDTSAPQLHSNALPSQ
>Jockey-1_CQ_gag#LINE/Jockey 45-1421  [Culex quinquefasciatus]
MTRRVPAQNAGNIALPAAQAGKKVGISKRKVEASTDGQKPGISKRKVLLEVTSNSKKTKKSDGTVPMDEEEENSSSHEEQ
LLKNNKFAGLPDEDQVAEAKENEVKQRKEKLPPFYVRQSAATIDFRAGLVELIKSGKVQGNIRLCQDGFKVLVQSRQHYQ
LVKDYLTENEAEYFTHDVVMDKPYKIVVRGLYDMPVEELAAELKVLKLDVLAVHKMSRRNKDIKYRDQLYLLHLAKGSTT
LPELKAIRAVFNIIVSWERYRPVHRDVTQCFNCLGFGHGGKNCHLKRRCAKCGTDAHITSQCIQDSLVKCLNCNGEHSST
DRKCPKRAEFVKIRQQASTKNQPQRRRTPPALVEQNFPPLQPRRQVPNLAPLPLDPRKRAEMNHPRPGSSQEPRPPPPGF
SQEPRPTQEPAVEENGNDLYTSTELLNIFKQMSAALRGCKTKTQQIEVLTSFVIQYGS
>I-2_BF_pol#LINE/Jockey 1715-5587 (with correction from Outcast-2 duplicate)  [Branchiostoma floridae]
MKIAQVNIRSINTSATLVEKMCEKKNIDVLCLSEVWHKAKQPTCLKTWTWTHKNRTDKRGGGTAIVTRENIKVMEEPIQQ
TTHADIVALNIYTKALNFVLVSAYVPPEDRLALQELLSIVNELNQKKKHLVLCGDLNTKHIAWGNKKNNKLGQMLYEAME
TGDFQIMNNNTPTRDDSIIDLTIVNKNTTKHMQSWRVEPEVQLRTDHNLITMSIGSKEETQKQQKWNLRNVDWKEWQDKT
DTVFQQWVEETDWATEKANSRSEEVYNSFKENLLTCAEEVITKKTITQHSKGYWNKALDVQMQITKTALRKFKRRRDKTN
LTKYLHEKEILTNMEEEARNTYWNEQLKDMDPRKPQKFWKAIKNQLGRSSRPTIQPIRQKDGTIATTDQQIAHAVTTEYA
PGGVEITGELATWKQNITQAVEISIKHEKQRLQDDHTYEEDTHEDTLNLDLTLEEVKAAIRKMDASSSPSPTEGILPVMI
KYGGDGLTIALQHMLNLVWETGQIPKAMKQDNKILIKKPGKDDYNKVRSYRPITLSSVVGKLMERIVDNRLTWWAEANHI
LSPYQEAYRKHRTATHGVLRLVQHIEEAWKNNETTVAVFADYEGCFDRIWQEGLLYKLITKGVKGRTLCYLESFLRGRET
RFKVNTITTEPEISKVGIPQGAVLSTTLCNIYTADAYQQTGLDNFQYADDGAAWCSGADVKEVSKQVETSIDHVISTWCP
LWNMRIEESKTKAMVFSPPHIDQPTADSLEVNNKNIDIIPEVRLVGITLDEKLNFQSHICNTQTKAYKALKAISKVTNAK
KNPNQEAHLQLYRAMIRPILEYGTECTLRAGQKHDVAYAPIQRKALLAATGCKIRTSTDALEVLTGIMPIDIHLTCRQAQ
AYLRMATKHTGNPIYDKIAQERSEEKIGTTLHLLETRFKEMKGEIEVSTVDKECYYDSRLPPFSVGRITGSFLPTTTNPA
NKEEAKEKVKQILHEMKKTPTTVVFTDGSSLGNPGPTGCAAVIYEQWGVTEPYTVRKPVAAKSNNYEGELQGIYLALNTL
HRSQSKNRRILILCDCKAALENVSSLQQAEAYNDLVNAARQRLFEIQQKGHNIQIEWCPGHMGVEGNELADMQAKLAAEE
AKHTENNTTWTKQQAMKHIEEQAVKRWQRRRENQTTSSHMQKANTSLKKKCSTWESRTTQISINQLVSGHTELNAYKNWI
DPTETPNCGTCGTRENIDHYMYECPKYENTRQHLMKEIDNIYEDYGIPQQERTMDVVSLAGMRSDLTNEANKRMYLAFTK
YIEDTRRFAEQV
>FW_DM_gag#LINE/Jockey 154-1866 [Drosophila fruit fly genus]
IVILNNKTMSQNDTRAQRQREHDERRLSIQRNNAYFSYVSPTIPNADIERSITHSPGNLLLPTNQERARSCSPALLAPTE
APLPPTTTAGEGPAARSASSSAAPAHGLTKSAKAKPLAINGTAALPAKQNENVNKKAGSTWQTGMDRYITIKRKLSPENS
DLGNKPKNTRDNSTLIKNVAPANTNRFALLVDTAEDVPLGSVDIEPKKTKPPPIYIREKSTSRLVNTLIGLIGKDSFHII
PLVRGTINEIKLQTKTEDDYRKVTNYFTAQKIGFYTYQLKSSKGLQVVLKGIESDVTPEEITEALKEKGFYAKNVFNIKN
RNRQPQPLFKIELEPENKPPRKNEVHPIYKLQLLLHRRITVEEPHKRNAPVQCTNCQEYGHTRSYCTLRPVCVVCGDLHD
SKQCQINKENACEKKCNNCGGNHTANYRGCPIYKELKIRLHKRMNTARAHQGSATLIPSETNPEVIFSKAASFAPWPTFN
TNKTTFANVLKSGMTPPTQNSRTPHEVHTKLDTQQNYHPAAQQETKTEAMMQALQQSMMEFMTFMKTTIQDMMRNQNLLI
QMLVAQQSNK
>Loner_Ele2_pol#LINE/I 2293-5985 [Aedes aegypti]
MDKLSTEVEDMISVLHWNCRSIMPKLDSFKFLVSNLQCDVFALSETWLTPDVTLPFHDFNIIRLDRSDSYGGVLLGIKKH
HSFYRVDLPPMSGIEVVACQVTIRGKSLSVASIYLPPRSAISRRDLSHICSVMPEPRLFIGDFNSHGTGWGELYDDHRST
LIYDLCDDFNMTILNTGEVTRVAPPAQDGSPRDSRLDLSICSSSLSLDCSWRVIQDPHGSDHLPIVVSISNGTQQSSSID
LAYDLTKHIDWGKYAETIIDGEQAVEVLPPLEEYRFLSELILNSALQAQRRPVPGPSVRKKPPNPWWDEECKALYREKSA
AFKDFRKRGSIDNYERYSSLERKFKSLVKAKKSGYWRHFVEGLSRETSLRTLWTVGRRMRNTSSVNEDRESSPRWIIDFA
KKVCPDSVPVDRVRRDIPVDRDAMDRPFSMVEFSLALLSCNNSAPGMDRIKFNLLKGLPDVAKRRLLNLFNHFLECNIVP
DDWRQVRVIAIQKPGKPASNYNSYRPIAMLSCIRKLLEKMILFRLDKWVESNGMLSDTQFGFRRAKGTNDCLALLSSEIQ
LAFAQKEQMGSVFLDIKGAFDSVCVDVLSDKLHASGLSSVLNNFLYNLLSEKHMSFTHGNLSVSRISYMGLPQGSCLSPL
LYNFYVRDIDDCLMENCSLRQLADDCVVSVTGPTAAELQGPLQDTLDNLSTWALKLGIEFSAEKTEMVVFSKKHKPAKFP
LTLMGKTITHSLSSKYLGVWFDAKCTWGKHIVYLTQKCQKRINFMRTITGTWWGAHPEDLIKLYQTTILSVLEYGSFCFQ
SAAKTHMLKIQRIQYRCLRIALGCMNSTHTMSLEVLAGVQPLTDRFAELTLRFLIRCEVLNPLVIENYEKLLEHNPQTRF
MSVYYWYMTLEVSPSSVNTNRDNFLEFDCSSVVFDLSMKQDIHGIPDHFRSKFIPPMFASKFGHVSESRQFFTDGSKMDD
ITGFGVYNVSHSASFMLQKPCSVYVAELAAIHYTLEYISSLPPEHFFIFSDSLSSLEAVRSMKPVKHSAYFLNRIRQALS
ALSIRSYTITLAWVPSHCSIPGNEKADSLAKVGAKEGDVYERQIAFEEFFALARRETLISWQQKWRDGEMGRWLHSIFPQ
VSKKPWFKGLGMSRDFIRVMCRLMSNHYSLSAHTHRIGLSESNLCVCGVAYQDIEHVVWGCVEHRGVRSELTETLRIRGK
QQKPVREVLAGLDLEYMNLIHLFLKRINIRV
>I_Ele39_gag#LINE/I 382-1722  [Aedes aegypti]
MASSATAPRGGIFEQHSRSNVPQWMLGSDDIGQVMVFVLRRKLDKSNVSENERNQNAALPNPFVVGASIRQVIGVKEASS
IETTREGRGSRYLLRTSSRSIAEKLTKITKLSDGSDIEIIAHPTLNTVQGVVFEPDTINVDEEKIQKELESQGVHTVRRI
KKRINGKLINTPLLVLSISGTILPEYVYFGLLRIPLRQYYPSPMMCFHCGHYGHSRKFCQQTGICLRCSTSHDILDGEQC
ENDPKCLHCKGGHSVSSRDCPKFKEEEKIIRLKIDRRISHAEAKRICSLESRTEGFKNVVQDQIQQELAMKDQLIASLQQ
QVATLVKEIESLKKILKPKPKDLPSATQDEQHATLQSAMDSPVVTPASSQSSLLKPNRLSRKDKESTVPPGKPPGSRCSS
RPSYDVQTRSRSGKRHYDISPTDTDKHKGKRISVPASTSNKPIDIDE
>Nimbus_pol#LINE/I-Nimb 1957-5622 Previously partially in protein database as LINE_Bloodfluke_pol (gi|283590|pir||PC1123) [Biomphalaria glabrata]
MDSRIVQWNCRGLKANYEEMQLLMDSETPVAVCLQETFLKDCISFRSYRAYTKNVEDAERASGGVCILVKDSIPHERVEL
QTTLQAVAARITLHKVITCCSLYLPPGAPLNRTDMEDLLKQLPRPYLILGDFNAHNTMWGSNNTDTRGRMLEDIFLQHDL
CILNDASPTYLHPGTGSFTCIDLTVCVPGLLDDFKWSVSNDLRGSDHFPIIITNNLPSLGRPQRWKLKKADWEQFQKRCS
EDITENILHEQNPADTFASKLLSIARKVVPLTSANPKRPSKPWFDTACKSAIGDRKKRLAAFIKNPSQENLKLFRIARAK
ARQTIRSAKRNSWRSFVGSLDAKTSARTVWKAVRRIKGKESNAIGHLKNQGRTVTSPREIADCLASSIAEKSSTAHYTPE
FQKVKTREERHPIDFRSENNEDYNKPFSLEELRESLDKSHDTAPGEDEIHYQFLKHLPEPSLAVLLGVYICVWQTGAFPN
SWRKATVIPIPKPGRDGSDPANYRPIALTSCICKTMERMINSRLVWYLESNKVISNYQCGFRQGRTTTDHLVRLEAYIRN
ALLRREHLVAVFFDIEKAYDTTWKHGILRDLALMGLKGHLPRFVEEFLKDRKFQVRVGNSASDTHDQEMGVPQGSILSVT
LFNIKINSIINALSPGIECSLYVDDFVILTYGKNMNTLERKLQLCLNKIQGWANYNGFKFSDSKTVSMHFCNLRGLHPDP
ELFIHKKKIPVVKTTKFLGLTLDSKFNFLPHIKELKKKCQKSLNILRVLSHTDWGADRDTLLLLYRSLIRSKLDYGSIIY
GAARKSYLKILEPIQNAALRLCLGAFRTSPIPSLHVEAGELPMDIRMKKLAMQYIVKLKSNPTNPAFDSIFNPTEVELYN
RRPNVIQPLGLRMREPIQNLTQPIDQISKIETPQNPPWLMNKPKLNLSLLNFKKENTDPSILQVHFRELQESYGDCGTIY
TDGSKMEGKVACACSFRNKTISRRLPDGCSIFTAELHAILLALMAVKASERSKFIICSDSKSALQALGRMKTDIPLVHKS
LKLLDLITADRRDVTFIWVPSHVGIEGNEAADREAKRALNHAVSGTQIPYSDLRQSIASATYREWQNRWEAETHSKLRQI
VADVRWRPTSKGLTRRGSTTMSRLRIGHTYITHSFVLKREEPPLCEYCDSRLTVEHILVDCPRYQDVRAKHFRATNLKTL
FNNVDPGKVLGFILEVGLSTKI
>DOC_pol#LINE/Jockey 1682-4576 [Drosophila fruit fly genus]
RPKIRTRSARPTDKNCSFRTYTDKHPTNTTKWHRSYDAIPTAKHERLHDVHAKYFARAHEKPKYPDSTSCIFKIPIMASL
RISLWNANGVSRHTQELTQFIYEKNIDVMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFD
KNYLQSTSIALQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVSPKGKQLYNALTKPE
NKLDYVSPGKPTYWPADPRKIPDLIDFAITKHVPRNMVTAEALADLSSDHSPVFLNMLTRPHIVDPPYRLTNFRTNWPRY
QKYVCSHIELTTALSTKEDIDKSTETLENILVSAAKASTPPVTYAKPNYIKTNREIERLVLDKRRLRRDWQSNRSPITKH
MLKIATRRLTNALKQEEKNSQRSYIEQLSPTSTKYPLWRAHRNLKTPIAPIMPLRSPSGTWFRSDEERASAFADHLQNVF
RPNPSTNTFILPPLIAANLDPQEPFEFRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYF
PQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEI
RTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIKLLPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGP
ILYTLYTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTFTLNKQTCPPLV
LNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIWTYGSELWGNA
SRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPLARKLIRVCSQSRLHRNDL
PAQQ
>DOC2_DM_gag#LINE/Jockey 284-1989 via tfasty with DOC3_DM_gag, 4 frameshifts and 3 stopcodons. [Drosophila fruit fly genus]
MIRNDTRVQRQREQDDRRLSLQRNNAYFSYVSATSADSERSITHNPTSLPLPTTQERARSCSPSLLSQNPQFPNTCEISL
RLPTVTSTVTTTTTATAITTTTGTVSSARSIMSTQAFAPTKPAIKTKTQFNGSAALSASQNVNKNAGSTIQTGMDRYITI
KRKLSPQNYKSQQTENKSNITRATMLTCSLTKRQKTPIDLRFxPAKSPKKVKPPPIYIREKSSSALVNKIATLIGENSFY
VIPLRKGNINETKVQTETEDNHRIPTKFLDEAGKNFYTYxLKSARGLQVVLKGIEATVSTTEIVEALKEKNFSAKMVMNI
LNKNKEPQPMFKIELEPSARHxKKNEVHPIYKLQLLLHRRITVEEPHKRNRPVQCTNCQEYGHTKAYCTLKSICVVCSEA
HSTANCHKNKEDISVKMCSNCGESHTANWRGCVVYKELKNRLNKRGESIRAQTTHIAHTPPQSGPSYTAPPPPPTTHRTS
PSVSFASALKSGIKSVNPLTQKSTSTREEQKITTLNEQTQHISTGIETMMISLQQTLKEFMTFMQTTMQELMRNQNMLIQ
LLLSSKSI
>SR1_pol#LINE/CR1 gi|2636683|gb|AAC06264.1| pol [Schistosoma mansoni]
EFLVDDLSILAPLGKSDHAVLSFSFVSKTELRYPTSNKRWNFKRLNVLALQDYLQQVDWNVRPEIEVDAHWDFLLHTILC
ATEHSVPKMVPKSYKQPAIIKNRTRRLLSRKRHCWAEYKRTDNNGAYRQYKHIRNTCTKAIREDRLQFQTKLIDRFVSNP
KSLFSYAASLRQGKTGVSQLLGPNGPTNNDSDAANLLAEHYSRTFQLTHINHTDESFTCTCTGLSEVDLSADLVLRKLQN
LKKDTSPGPDMVHSAVLREAASILATPLSVMFAHSLSRGKLPEIWKLAHITPIFKGGRRSEPSSYRPVALLSIPSKIMES
LVFDGILEHLSSSKFFSPQQHGFRKGHSCTTNLLTAVDKWTTILDRKGKVDVIYLDFSKAFDRVNHACLIKKLGRLGIKP
PLIDWITSYLENRHFKVRINFTLSQAMECPSGVPQGSILGPLLFLIYINDLPQQVSSDLLLFADDVKLWREIRTHNDILV
LQEDLTRLQSWVDDNGLTFNTSKCKVVHLRHVADHSYNLGNSPLEVSQVEKDLGVLVPYDLKSYANCDKNASQANLALVT
LKRIFGQFDGRTFHIIFNSFIRPHLEYGNIVFPPSLQKDKVTLERIQRRATKSVRGLKFKPYEERLKSLNLYPLEYRRLR
GDLLMTYSILNTSGHPLKQLLKLSHNTNLRGNTQKLETLHSRTDCRHNFYSVRVVKCWNS
>PSLINE_pol#LINE/CR1 1475-4396 [Platemys spixii]
PSEEGFKLGSMGDGDLSPXVSGEVGHXXEAEGGGCNRGGLLIRTEKVGQSASYLXCLYTNARSLGNKQEELEVLAQSRNY
DMIXXTETWWNNSHDWNTVMDGYKLFRKDRQGRKGGGVALYVREHYDXSELQCETGDTPVESLWVKLRSKNNKGDVVVGV
CYRXPDQEDEVDEAFFSQLGKVSSSQDLILMGDFNHPDICWKSNTAEHKQSRKFLXXVADNFLVQVLEQPTRGRAXLDLL
LTNREDLVGEVEVGXNLGSSDHEMVEFRILTKGRKENSRIRTMDFRKADFDSLRELMGRIPWEANMRGKGIQGXWLYFKE
TLLRAQEQTIPMCRKNSKYGRRPAWLNXEXFGELKHKKEAYKKWKLGQMTREXYKNTARTCRXEIRKAKAQLELQLARDV
KGNKKGFYRYVSNKXKXRESVGPLQNGGGNLVTXDVEKAEVLNAFFASVFTDKVSSQTTALGGTXWGGGEXPSVLKEQVQ
DYLERLDXHKSMGXDAXHPRVLRELADVIXEPLAIIFEXSWRLGEVPDDWKKANIVPIFKKGKKEDPGNYRPVSLTSXPG
KIMEQVLKESILRHLEERKVIRXSQHGFTKGKSCLTNLIAFYEEVTGSVDVGKAVDVIYLDFSKAFDTVSHSILISKLKK
YGLDEWTIKWIENWLXHRAQRVVINGSMSSWQPVTSGVPQGSVLGPVLFNIFINDLEDGVDCTLSKFADDTKLGGVVDTL
EGRDRIQKDLNKLEDWAKRNLMRFNKDKCRVLHLGWKNPMHSYRLGTDELGSSSAEKDLGVTVDKKLDMSQQCALVAKKA
NGILGCISKSIASRSREVIIXLYSALVRPHLEYCVQFWAPHYKKDVXKLERVQRRATKMIRGLEHKTYEERLKELGLFSL
QKRRMRGDLIAAFNYLKGGSREDGARLFSVVADDRTRSNGLKLQWGRSRLDIRKKFFTRRVVKHWNGLPREVVASPSLEV
FKLRLDKTLAGMI
>CR1-45_BF_pol#LINE/CR1-Zenon 3-3095  [Branchiostoma floridae]
ESWLGDSIESDDISLDGFQPPIRRDRNRHGGGVLIYISNTIPCKRRDDLEVISSECVWLELQIGIFKILFATYYRPPGQN
ISITNDFMDQFIDAVSTAHSERPDAIVVTGDFNSKHNEWWHLDPVNYAGAKLRQATQIVNLQQIITEPTCDLSQSPSLID
LIFTDSPEFFTKTSVLSPLSNCHHSPIIGYMSFLVSVPKPYSRTFWDFSNIDNDSLTFFLSDPKWFDIYGCGTVDEATSK
LVQLILEAKYSCIPHKTITIKPNDKPWMSSNIRKLMHLRDKFHKKAKKSNFSADWIAYRNIRNKLTNKISKAKFDYESRL
AQSLSNPSTAPKKWWHIVKKFYKRNSFSTIPPLLNGLVSIVDSYEKACIFNDFFASQSTIDTSNAALPDLTFLTSEKSTY
ISTTSDEVEMLIGCLESSKAHGYDDIDNRFLKLIAPFISDKLAYVFNLSLSHGIFPNVWKKANVIPIFKKGDSRDKTNYR
PVSLLPSLSKILEKIVYKHVYNHLISNDLLYTFQSGFMKNDSTTCQLVYICNLILEALDKGKEVRAVFLDFSRAFDKVWH
TGLIFKLQQYGIEGPLLNWFSSYLSERLQRVVLDGQASPWREIGAGVPQGSVLGPLLFIIYINDIVNELDSLPFLFADDS
SLLEIVENPYTSAHRLNSDLSKILAWSNTWLMDLNPSKTEEMCFTTKKSPQYHPPLFLGTTEIVSVSSHKHIGTILTSDM
SWNNHLNNICSNVSKRVNVFKCLKFKLPRHVLQTIYKSFIRPSLEYADVVWHGCSGEKSSLLERIQYQCSIVVSGAIKGS
SYSNVCEELGWESLSSRRHNHRLLLFYKIVNGLTRNYLLELLPREITQTTSYNLRNKFNFRLSRYSTNRLIKSFVPYCVS
HWNELDSSVRCLRYPMFRSYLTKLVRPNSPLHFSSGPRYTCALLARFRIGTYGLNHSLFKRGLVPSPSCVCGCQSETIYH
YLFDCPLFDKHRTVLLNNISNLTDHLFDFDTISDNLKLSIVLRGSPTFNAEINSKLMLFTQKFIDLTQRF
>CR1-52_BF_pol#LINE/CR1-Zenon 60-1541 fragment [Branchiostoma floridae]
GPDSIPARVLKHAATELSKPLAKLFQLLLDKHYMPKQWKVAHVIPVHKKNNKHDPSNYRPISLLSIISKVMESIINKALW
KHISENHLISDKQFGFRAGHSTADALTYVIQHLHDAKDKRQESRLICLDISRAFDRVWHKGLIAKLKAIGVDGKVLNWIE
NYLADRELKAIISGKTSTARVINAGVPQGSILGPLLFIIYINDLTEKLENTSMLYADDSSIMSIIKERRERARAAQSLNS
DLEEIQNWANSWNVIFGATKCKCMTISNLKDAVGNHPELSFMDTTLAEVDEVDLLGATIRKDLTWNHHIKKMAADAGKRL
GLLRRAAPYLNPQQRAIIYKSMVRSSMEYASTVWMGACSTSLDLLNAIQRRATKIIDLPETDLYKYQIQPLEQRRNVGAL
TLLHRMYNHDAPAPLNSLLPEPYTHRRETRLSTSQHCNALEPVKSATTSHRRTFLPATTKLWNLLPQHIVTLRDKQKFKT
SINNHFSDLRQRP
>CR1-46_BF_pol#LINE/CR1-Zenon 125-3391  [Branchiostoma floridae]
MIILAGDIHPNPGPPFRKEINFMHINVNSLVAGSKIDELSAIVIRFKLDVVAISESWLGDSVNSSDILLNGFQAPIRRDR
NRHGGGVLIYVSDKIAYKRRLDLEPSPVECIWLELSTGCSRIIFSVYYRPPGQDSSTANEFIDLFIDSVYAARSSNYDAM
IITGDFNAKHNAWWAPDPITPVGMKLFQASTMLNLTQVISEPTCDLSRSPSLIDLLFTDVGQLVKQTIVLSPLSACHHCP
IITTFNLSLKCPKPYTRTVWDYSKIDLNLLEDFSFDPKWNDIFYCNNVDDACDKLVELIFEAKSKCVPHKVIVVRPRDKP
WMSPRIRSLMRQRDKLHRKAKVSNSPTLWSLYRNVRNKLVREISLSKSNYYNRLVDSLTSSPCSSKKWWHIVKMFFCSKA
SSTIPPLKSGHSYVTDSCEKARMFNDFFSAQASVDDTKASLPQIDYLTDVRLSECFTTPAEVELYASSLDISKACGYDNV
DNRFLKLICPLISDKIAYVFNISLCHGVFPEAWKRANVVPIFKKGDPDDVSNYRPVSLLPSLSKILEKIVFKHLYNHLMS
QNLLYSLQSGFIRGDSTVNQLICITDKIFDALDSNREVRAVYLDFSRAFDKVWHKGLIFKLQRNGVDGSILNWFYSYLSS
REQRVVIDGQCSDWCYVGAGVPQGSVLGPLLFLVYINDMVDGLVTCPFLFADDSSLLDIVENPNSTAIRLNSDLMKISSW
SARWLMELNPLKTEEMLFSKKLNPPYHPPLFLNNCVIKSVKSHKHIGSFLTTTMSWEMQISNMISKTSKRVSALNKLKFR
LPRTVLDTIYKSFIRPLLEYADIIWHGCTLCDSQRLERVQYECALTVSGAVRGSSYSSLLAELGWERLSDRRHVHSLVMF
YKIVNGHTRQYLKDLIPPVVSVFTSHNLRNKHNLRVPICTTSRYQKSFIPYATQHWNGLDTAVRSLSFSLYKKHLMKLVR
PSINKHFSYGPRYTCALLTRLRIGTCSLNQSLFIRNLASSPACNCGCRCEGVVHFLLYCPTYQQYRTIFFDNLQNLLGNS
LDFNSLSESARIHLLLRGSTFLSYHTNCSILKLTQLYIVHTKRFATTL
>Perere-4_pol#LINE/CR1 1860-4352 [Schistosoma mansoni]
MCLINARSICNKKTDLALFASIYQPSLIMISEAWTNSNISDLSISLDNYLLYRSDRLKGRGGGCLIYAHSSLNSLLCDMP
ELNKLKDSVWIVLKPSNSITLLFGCIYQQPNLAIGKIAVLSEVFTLASSLPFTGKLICGDFNMPEISWFPVKAPKRYESF
IECLELGQWTQYVSSPTRHQNILDLVFTSGLTPNTVYIGKTFPGSDHNTVVCSLNIKNTNGRRKNVTLRRNYRKVDWNNF
HNYLRSTDWGTYFTANNTDTLTNIFYHNIESIMNKIAPLEYWRPKFSKDLFIPAGTRRRLQRHCTRFHNSNDFSSLVTMT
EILVQTDAISTQKAIEQEKRAVELSNNSSALTTLFQNKLKRSKSRGNIFIKDKQVYEDPKLVTGLFNEHFCSSLTDEKPL
NDSELITASACEITNVDFNVQNISKAISTLKHSYTDGPDGIPASMLKRGGVDMCVLLLKLFAISLSTAHYPTAWKTTHII
PKIKTGPEANVENYRPINITSVVSRVMEKVVKAALVQHLITNNLISVSQHGFLRSRSCDTCLVDYMNNITLKRDNGLLVS
VIFLDFKKAFDKVPHERLLAKLRSFGINNPLYSWFVSFLKGRKQMVNYNDCLSLPRPITSGVIQGSVLGPLLFLMYINDI
CNIIKSGKPYLYADDLKIVYSYKPEVLSESVRLIQDDLNNLTIWSEKWQLPFNLHKCGIMHFGKHPYEPQLYLNKSKVQT
LNSVHDLGINYTGSLNFKAHASFIISKARRLIGFITKNFFTTDAKLTLYKICVRPSLEYCSFIFSNMNTTDKIRVEDVQR
RFTRQLLGSDTTLDYTSRCMHLSLEPLWHRR
>CR1_Ja_Tgu_gag#LINE/CR1 2-1045  [Taeniopygia guttata]
LARGEPPRKRAAVQAPGCRECLSLVLXAGGQWEDTCVRCEQVXDLLCPVAELKEEVGRPRSIRECEREIDWWSRILPSLR
EMQWMEAQQESEEPXPSCHQAEGRDLEDGGEWKQVPARGGXRIPSRPPSPSQVPLQNRYEALDPEGQADDSGEEXLPGGS
PRSMRSARRITAARIKKKRRVVVVGDSLLRGAEGPVCQPDPSHREVCCLPGARVRDITRRLPGLIQPSDYYPLLVVQVGS
DEVXERSXRAIKKDFXALGRLVEGTGAQVVFSSIPSVAGKNAERNRRTHXINXWLKDWCHRWNFGFFDHGAVYTAPGLLE
TDGVHLSKRGKRILAHELAGLIERALN
>CR1_Ele42_pol#LINE/CR1 1510-5754 May be way too long. [Aedes aegypti]
MGTPSDPVTVEPNHHATSNASVFASCHLRRPGPVYGGLEGVSQPAFSGKYAYHNGHSLGDISNNSSSSENDDPPANLHQN
SFSTSQFHLPGRNGEGLMEAPGPSDPVEQSTASVLHNRPGSVISCGAGVFQSVSSGCLTRHSHYGPKLINPSSSSFMPSS
LTSSKAPGCTPVSLMEAPYPLVTVEPFLPATSSHPGPVYECGDGVFQTTTAGKYSHNMNILPPVTSVASSCSSSTSSACG
LPITDILDVSISAKWTPGRTLAASHKEAPIPLSVVEPPLPATSSRPGPTSELGDGVFRTQISGKYDDFMSFPYPEPIVAS
SPSTIFAPSNAILSQQPTSIVRSCPDENIQSHNLDNRIPSSQPPLSANWTPGRILAASLEEAPIPLSVVEPPPPATSSRP
GPTSELGDGVFRTSTSGKYDLHPVFPEPESISNSSTSNLVLPPEATSRNSTSAPASSDVLLYYQNVGGINTSLAEYQAAV
SDGCYDVYALTETWLNGNTLTCQLFDASYSVYRQDRSSLSSNKSTGGGVLLAVRSNFKSRSLSPPNNALVEQLWVAISTV
DGTLFICVVYIPPDRVNDAALIDKHVESLSWITSQLGARDKVIILGDFNMGSISWQRHSLGFYYPIASRSSISQTSRDLL
DAYSTAGLKQAIGIENEHNRMLDLCFVSDQLLESCTIIQAPSPLVKLCRHHPPILMNFQIYPIRHFHNTAESISYDFNKA
NFNGMNAFLAHVDWDEILRDYDANLAASTVSGILLYAIDQFVPVKSRPEAAKPPWSNAHLKNLKRVKRAALRRHSKFRTD
TTRASYMKANQDYQQLNDHLYNAYQNRMQRQLRTNPKSFWRYVNDQRKESGLPSTMNDGSSVADSIGGIADMFRSQFSRV
FTNEHLDSHDVALAIRNVPRLPGSGQLCIINDDMVIAASKEIKSSTGYGPDGIPSLIIKRCVDTLAKPLTAVFNLSLSTG
VFPNCWKHSYVFPVFKKGCKSSVSNYRGIAALSSISKLFEVIVLRQLVQSYAHYISEDQHGFMPKRSTTTNLTCFISFVT
RQIESGQQVDAIYTDLSAAFDKMNHQIALAKFDKLGMNNTLLTWLRSYLTGRSMSVKIADHVSLPFPAWSGVPQGSHLGP
FLFLLYMNDVNFVLKCLKLSYADDVKLYYTIKQPQDTVFLQRQLETFAEWCRLNRMLLNTSKCSVISFGRKQSMIPFAYA
LSGEQLQRESTIKDLGIMIDSKLTFKDHVSYIVSKASAQLGFVFRFAKKIKDIYCLKSLYCSIVRPILEYSSVVWSPYYQ
NEIQRIETVQRKFIRFALRHLRWRDPLNLPSYSSRCQLINLDSLEARRNVAKACFIGDLLQGNMDCPALLNMLDINTRRR
NLRTHSFFNLSVTRTNYSLHEPVRSMSRLFNQCYFVFDFNVSRERNKCNFRRVLC
>HER1_ST_pol#LINE/CR1 2-1384 (fragment) [Scyliorhinus torazame]
EVVWVEVRNRKGAVTLLGVFYRPPNSSRDVEEQIGKQILERCRSHRVVVMGDFNFPNIEWKLFRSNSLDGVVFVQCVQEX
FLTQYVDCPTRGGAILDLVLGNEPGQVIDLLVGEHFGDSDHNSVTFTLVMERDRCVQQGKVYNWGKGKYDVVRQELKCIS
WEHRLSGKDTSEMWNLFKEQVLRVLDMYVPVRQGRDGRVREPWLTREVECLVKRKKETYVRLRKQGSDRALEGYKIARRE
LKKGIRRAKRGHEQSLAGRIKENPKAFYTYVRNMRMTRARVGPIKDSSGRLCIESEEIGEVLNEYVSSVFTNERGHIVGE
DSVKQTGKLEEKLVRKEDVLGILKNLRIDKSPGPDGIYPRILWEARDEIAEPLAMIFSSSLSTGVVPGDWRVANVVPLFK
KGNRDNPGNYRPVSLTSVVGKVMERVLKDRISEHLERHCLIRDSQHGFVRGRSCLKSLIEF
>LINE2D_CE_pol#LINE/CR1 3-2472 (fragment; 1 frameshift) [Caenorhabditis elegans]
PPCCSVSENAALIAHLESYIPLSRTILAGDLNFPQINWSSANSSLHPFASFLSSSNLSQKVHFPTRISASSSNILDLVAC
SADISILHLSPQPALLNSDHLSVEFKIPILSPIDSPCPTSQDSNSSPLFDYKKCNFPLLNRDLARVNWDFEFCSQKSVSD
KFDRLLSILNNLLTQHCPTKSISVSKSPSPYHNIHRKLKRLRNKISKLILSRKCTFEIIKTAQSKYRKLYRNYRKYVRRF
ENDIIANSNFTKIRRLINSRLKSQNLVPAIILDNKSIVNDSEKSEIFAKIFASHYSDDSSQSQNSLHSPSPTSHSSLQNQ
TSTSLHVDSFQPYMIESVLSKLPPKCGFSPHCANYLVLKKCATPLAFPLSIIYKQSFADSKIPDCWKKAIIIPIPKKGNP
SSPSNYRPISLTDPFVRVMERIICSRIRADFGHLLSPHQHGFLHYRSCPSSLVRSVSLYHSLLKKEKSLDIIFFDFAKAF
DKVSHSILLGKLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINDLLIDLAPTIN
ISCFADDVKIFHTDPTIIQNSIDIIVSWSKLNELPLAPTKSALLALGTRNKNQSYSVDGVPIPPSSTVRDLGLITDCKLK
FDPHIAKVSCLAMLRAKQILKAFSSNTPKFYAHLFKTYVAPILNYCSEIYAPPPxNSLLSAKLEQPLRHFTKRVLQRCNT
KFSCYENRLSIMELHSTRHDRIKAQLKLLYRLLTGTSHFSNLNQFVTFSSSNRHPMILVRKDKCSTHFFALIIPVWNNLF
KNVTVFMSPYQFCEFIDLNIPRL
>LFR1_LP_pol#LINE/CR1 47-1318 via tfasty with CR1-G_pol, 2 frameshifts and 2 stopcodons (fragment) [Lepidosiren paradoxa]
PVISLEEVQASLSKTKNTSSMGPDNIPGSLLVSLKSSFAPQLHRLFNLSLHTGHVPQEWRTATVIPLHKGGRHYxPGNYR
PIRLTSLICKAMECIIADLINKDLGGLQTLDPLQFGFMKGRSCLLNLVDFFERVTESLDQDGEVHTTYLDLAKAFDTIPL
SGIVERLIQINVKPFITHWIANWLTNRTQKIKIGGANSSICTVTSGIPQGSVLGPLLFGIYFSEVKSNVEGLWLTKFADD
xKLGAVVNLMQTMILKQGLNQMNTWCKDHGLKLNAKKCVIVQFGNRSTSTSYQIEGVPLNTEAVVRDLGTYVDEKLSFDQ
HVATVVRKAFGIAHLIAKGMQSRSREVLIPLYSALIQPIIEYNAPFGMYLSKHLAQLERPQHFITKRISGLEGKQYEECL
KSLSLFSVAYRLLRGDLCLTYRAL
>CR1-53_BF_pol#LINE/CR1-Zenon 1156-4566  [Branchiostoma floridae]
MPISTEQHMAVIGMFEADRHFAVLKRCKTCIHFDIFLLFFPLPVLVVLSLIAGDIHPNPGPSTMYTSFKYLNILHANVNS
LVAGSKLDELSSLAIQHKLDVIAISESWLGDTIDTSNIVLDGFQSPIRRDRNRHGGGVVVYVSDQIAFNRRTDLETATVE
CIWLELCTGKFRILFAVYYRPPAQDLYTINEFVDSFSDSVFSAGGTPHDALIITGDFNAKHQAWWPRDPITTAGLKLFQA
SQMLNLTQVIKEPTCDLSLSASLIDLLFTDTSGIVLSTSVLSPLSGCHHSPIVATFKLSLQLPRPYTRSVWDYSRIDFTK
LTTFVSDPKWNDIYHCNSVNEAGSKLTDLIYEAKNICVPHKTIKIRPRDKPWMLPRLRRLMRQRDKLHKRAKLSNNPVHW
ASYRRIRNKLVGDIASAKSDYHNRLVQSLSEPNTASKKWWHIIKYFYRCNSISTIPPLNLGNTFTTDSKEKASLFNEYFA
AQSSVDDSNAVLPELDYLTDARLYECVTSAEEVELYISLLDVSKAHGFDSVDNRFLKLIGPFISDKIAFVFNLSLCHGTF
PQNWKCANVVPIFKKGDPQQVSNYRPVSLLPSLSKILEKIVYKHLYNHLLSQSLLSSFQSGFIRGDSTVCQLVCITHKIL
EALDANKEVRAVYLDFSRAFDKVWHDGLIFKLRRNGVEGPLLNWFQSYLHGRIQRVVVDGQCSGWLSVCAGVPQGSVLGP
LLFLIYINDMLDDLLTQPFLFADDSSLIDIVENPILTSIRLNSDLQRILSWSNKWLMELNPSKTEEICISKKKVPPIHPP
LFLGNSVIQTVKHHKHIGVILTSNMSWSTHIIQMVAKVFKKVSIIKNLKFKLPRNILENIYKTFIRPSLEYADVVWHSCS
DSDSRLIERLQYECSLTVSGAVRGSSYSSVLQELGWEKLSERRYVHSLLLFYKIVNGQARQYLTDLLPPAVSEATSYNLR
NKSNIQMPVCTTNRFLRSFVPYSIQKWNCLDLSIRSLSPHLFKKYLIKSVRPVVPTYFSSGPRYPCVLLTRLRVGTHSLN
HSLSVRNLVDNPSCTCGCRCESISHFLLHCPNYINQRLLLFDRIKNLNISTLNTDAMSETAVINLLIRGSPLLSSTDNAN
VLYIAQMYLLETKRFV
>I-1_DBp_pol#LINE/I 343-4029  [Drosophila bipectinata]
MSITLLQWNMNGYFNNYHELQLLINDSNPDVICLQETHINTNLTNIAYPKQFIGYFYNFSSNTYAKQGVSLLVRKDIPHK
PIPINSNTCSLGIELLSHPKICIFNTYIPPSQFVAANEILKIVDLSSKPILYVGDFNAWSPLWGSSLHNSRGLQIEEVIN
KSTLTLLNDGSATHHSTHNSFTAIDLTLASASLFPFCKWSVLDSLYGSDHYPLKTKIQFRTNPINIPPSPKFKLDKANWD
LYRAKCRDNFNFPTTHDLNLFAAKIIKGIKASANLAIPQTKPSLHQRNVPWWSKALQDLRQQKQSLWHAYKQTQSTAALI
SYRKANALFKYNSKKAKRESYERFTSNITPLSSTKKTWADLNRLIGNFPSNLRTIKYNNENLHHSVDIADAFGNFWSDYS
KDGNFSNQYKARKEVILSQEYTPTKLSTASTDLDSNFSLSELEYALQHAKGKTPGIDRISYPMLKQLPSEAKHRLLEMYN
AMLARGTYPHVWKSAVIIPILKPNKPTHEITSFRPISLLPCLSKTLEKMLAKRLMWFVTKHKLISPHQTAFKQQHSTIDS
LLHLHHYASDALSTKNHVTILATDFERAFDRVGVHTVLDQLSRWGVGQKTFNLAKAFMINRSIRVRVNNTLSKFYTLHNG
IPQGSPLSVVLFMIAFQSLNNIILRHKQIKLAIYADDAIIFSKCKNTTALNNKFKEVLNEIQIWGNTSGATLAVNKCKVF
HICKNKRCTYPPLSHNDIDIERVSFLKILGLTFDKRLTFKQHCSELRKKLIKRLNIIKFLTSKRSLIHRTTLIQATRALL
LSIIDYGLPIYGWCAPSHLRKILPPYHAAVRRSIGAFPTTPTKCILAEAGLPDIITRVTQTTFKLIPKLMCSTNSILLKD
YKVASKHRRKFKVQSTIRRCITFTKRHNIGSPYRWNKVIPSPPWKIRSTAIDTTLHDFQKSKTPITTFKQLFEEVTHKYS
DRKWLYTDGSKSDATTTFAVVDQHGLIVSWGRLPHHFSVFAAEAVAIVKAIKFALELKGSYVICSDSLSTLQGVQNFYNN
NNLLSEIRHLCIKNISKIQLLWVPAHIGITGNEMADNAAKLAGRAPCLTIIPGVQQDIWKNIKNILRDIELEDWSSFNHW
YKQSNPDKKDIKFPTSLNGRECAILTRLKTGHTNLTHKHILNGETRPNCPNCGEELSVKHLLDTCGHYQNSRTHLFGLTP
PSNLLSDLTAANSKLLLSFLRNCKITHLI
>GilM_pol#LINE/Genie (a.k.a GENIE1, GiRE1) [Giardia intestinalis]
MRSALSAPSGTTEIGASSGPEPPNHAPTDSHRPLPRGTPDPMTLGDGNDASTTAMARPSSCEPLCGSHGPPSPQPGPGNS
RSATDNSPNESSPVHGLQGSGASVARDASPPCLSNDLLPCGQEPLPIPDDGLPYDLGHDNSPSITDEQEARGADLPAPGG
RTTVCERCGEVLPDSAAIDVHIGMHHPPPGSPSPSRSPSPLSGSAPPPAAAEPSPSPTPDPVFPYACSMCRARYKTERGL
KAHIARLGHYLPLDATVPERIGVPSGSPSPELLRLLTDVFTEMAGRLPPVEALARFLSTCRRMEGSGRLPPAQSLLRKGL
LGRAWQALLSETSSAARVPEPQGKEREAIVHELHPRPMPVSLPPVHHVLGPSPKITAKALLKELQAMRPVAAGPSGLGKP
HLLHLCGAAGAAELFTSVLTTLFSSRNWAQLQPLCEFRLKLLPKSGGRWRPIAVQETLLVAFHRLLLRRTPALRKLPAWQ
LAFEHLAQMKAIRAAEELKRTHHLLTVDVRNAFNSVPHSVILFALRRAGVVQPTVAYIESFLAARHSSDLPAVPAGVPQG
DPLSMAMFCQSLVWPVETYLGQYKVVAYADDLVIASEEAIPIDTVKSDAQSALSRIGLTVELSKCSSTQAGAISFMGTRV
LKHSSFNLAQTSARRLHEHLAVLRASGLSLHDRLRLLSACVVPAVNYGPLVDDYPGPSPYADVDAQIVEEVATLLEIPEP
LAKTLALTPRAKYGLGLVLPHHYYDEMHRQRQDMKAGVFRELRKKRLQDTAALRSFLPLALLGCAPLDNTQVLFIGDCLA
GRYQRGRPMGTCCHCKQPFLPRHHLVCKAINGIHVARHDKILDALLACSRGRAGSVVRNPTIPVDHLQPDLVIGGGFGDL
VVTVPWRLERSYALKAAKYRPLVLQGRAAHILPVVVGADGVLHHLSAAGLAFAGVDLARFMQEAAQVILWHYRLSALLYA
GLRVERPVHRPAPAVSLPEPAPNEARATPPTPLTPAMWSPGTSPSVEIMADLSQHPDAAVPPPWGPAEVSSSITWGTDHP
AQPDANERPDPFMCSRAPSPPPLDDDSPDDAGAPEPVHKALPSFFKRVGPPKPHAPDGFYPFKRIDTGR
>I-1_DYa_gag#LINE/I 197-1366  [Drosophila yakuba]
MPPEINRLFKSSDTGPKFIIIKRTDNETFKNVSPFLRKKVIDYACNGEVETAKVTKEGSMLIKTKDTLQAQKLLKMTNFH
NFPVEVSEHKTLNFSKGVIYSNDLRNIDDETIVNELKPQNVTEIRKIKKIENNEPKETGLIIITFASLTLPDTLMIGYER
VNVRPYIPLPLRCRNCLRFGHPTTACSSNKICINCSAEQXTTTDEICTKTKFCVNCKYDIPDNKHSPLEKTCPAFIKQKE
LTSIKTLEKVDHKKALMIYYSRHTHQPTLYSTITTEKTTKEATPITKLPIVLPNSLQNGKNTASTSSAAKPPSRNTTTYD
DLDTLMDTTPITASTSTLNSSIQEDLKLRIYTNKQNTLAKPLKSKEKTEQKQKKNNSNKTPLLNSDSDSI
>I-2_CQ_pol#LINE/I 201-3956  [Culex quinquefasciatus]
MAIEPSTESSQDALXPNDDNQNPNLTNQQAVSSTSRPALTDGAADDTXTTTPTTTAIAVQWNLRGMAARTNELQQLLEQH
RPVVVALQEIKTKKKKDKNKLDRRRYDWXFCFXPSDGYSNGVALGIXKDVPHRYIDVQGPLQVVAARVEWPVLATFVSIY
ICREDGKTEIEDKLAQLVAQLPAPVVLLGDFNAHSPLWGGNHIDQRGKAIECLLGKHNFIILNDGSHTRVDPSNGRSSAI
DLSIVSDTIAPELVWSVDVDTRESDHYPIFIHSVDHTRAKRSRRPRWKYDSADWTKFANEVQKPNPESAQEIEEAIIAAA
EVSIPRTSTRVGRKAVHWWTNEVEEAVKDRRKKLRRLRKLGDDHPNKIQALNEFKLARNTARQIVEKAKADSWAAFVSGI
APSSGTTEIWRRVNVFRNGPKVNIHQLVINGKLSDEPGEVAETLADYFAEVSAARQSTHRRAVPDQPTPTFEGGETSKYN
ETFSMEELDWAIRKSKGLSAGVDNIGYPMIRNLPHLTKTRLLELYNRIWEDGNIPDRWKEGIVVPIPKAGKDRKTVGNQR
PITLVSCLGKIMERMVNRRLITTLEELGVFGDNQHGFRRGKGVDTYLAELESEIQNWIDKRQHGELALLDLAKAYDTAER
APILQNLHRWGIRGRMGCFVANFLKNRTFRVAIGSFLSTLRTMESGVPQGTILAVTLFLVRMTEVRRYIPKGVSLKLYAD
DILLVVHGRSAVYVRKKIQEAISSVETWTQLVGFELASTKSNVIHICRRNRHEERNPVTTDAGPIELVKYARLLGTGFDG
RFNFKQHISDTKKMLESRNRVLRVIGGHRISGARKTLLDVHRAIVQSRLFYAWGIVSSATPAAIRPLGPAHVAGIRNASG
AFRTSPVKSIYAEAGQLPFDYAATEATVTKAARLEAGGTISPQHPLGVRARREFQRITQEEMPEIARKLRIGDRPWHAEK
PKVDWEMTAYVRAGETSQKVAAAFGIVREKYGEHRQIFTDGSKDEDFTGCGFVDGTEQTAIRLPAQCSIFSAESFAILKA
LERIPEGDGETTVIYTDSASVAEAVENGVSHHPWVQAIEREMRRTGAILCWVPGHCGIIGNERADETARSAKRLDRINLP
VPAQDFLSWAKNLIRLAWEREWHGERDLFLRRVKPNTLPGSDRDNQEEQRALTRLRIGHTRLTHEGLFRGERVTCDTCGV
PMTVEHILCTCRKFDGLRDDGAQSVYGALCNDPEAEKTLLRYLKNTKLLTEI
>I-2_AC_pol#LINE/I 368-4180 [Aplysia californica]
MTLEVGNVRYGARPVRTHQAGAVPGPKPRRGPPQRLEGLPSSWSARRRGRKATGNTNTKQVKKSLNIMHWNAEGISNKKT
ELENFLKDNEIHISCIQETHLQEEASFKVRGYQCFRNDRQGRKKGGVLTLVRNNLNTVEIKKYTGEAEYIHNRITTSRGN
LDLVNYYCPNDKNLVLETIEVPDTDFIIAGDFNSQSQSWGYNRLDRRGEEIEAWQDENHLLLVNDPLDQPTFYSRAWHST
TTPDLALCTENLHRHLSRKVETQLGGSDHRPVLLTIVESLPEDSPKRPRWNYKKADWRLFSIRTNELTKNIAVFDKNINN
AITEFNENILKSAKETIPRGVRKNYTPYWTPELQKTHNDLIKAREEAETHPGIENNNKLQRCKAHYLKTKLECTRKSWRD
KTHKLNLEKDTTKLWRLVKGLNDEGNKSAKITLEVEGEMEMEKRAAHTFVKAYAQESNIKIPRERQKEVRQEERRKRSTN
NIPEAMEKDITMEELKKAINQLKQRKSPGPDEITNEMLQHLGNTALQTLLDIFNLSWKIGQVPQCWKEATMIPILKPGKS
KAQPLSYRPISLTSCVCKTMERIIACRMQWYLEAQHIIVPEQAGFRQFRSTEDQTTYLSQVIEDSFQAQKVMLATFVDLQ
KAFDKVWKEGLLVKLLRSGIQGNMYQWTKSYLHNRRARVLVDGYQGRKMLLRQGVPQGGVMSPLLFILFINDLMNELPKG
IHAALYADDLVLWCSEEFVTTATYRMQLALDKLTTWTKTWCVTVNKEKSSATLFTLSQAEPKHLTLDKTPLKFENQQKYL
GIIFDKRLTWKQHIQNAENKARKKLNIMRKLAGTQWGANEKTLRQVYLGAIRPHLEYGSSAWMTAAQTHKYTLEKVQNQA
LRIITGAMRSTPIEKMEQTTSIVALQRRWECKALIQYTKATAMEDHILHTRTARSNTARLKRSNFIKESRKIQRSLQDHL
PATVNMLNHTPEAPSWEKKNTNISIHTSIPMFTTKDDHSDLSKKSLTLSMLEERYPREAWIRIYTDGSATDAVKRGGAGV
YVQFPNGRRQAEAVPTGRHCTNYRAETEALVHAANIIKNVVDPQSQVVFLTDAMSVLQAITSGKLPRLRKEIEDIPCLRI
MLQWIPSHCGVLGNEQADRMAKLGAQKEQPDNSVNYTEIKTIINTLFKAPQTPDGYHELSRQEQVIIFRLRTQHTRLRQH
MYKCFKLVQSPKCQCGEADQTVEHILQHCKTHRALRQETWPTPLTLQEKLYGPPDELTRTAQFMTDTGLQV
>60474046_Ddi_pol#LINE/DRE gi|60474046|gb|EAL71983.1| hypothetical protein DDB0190137 [Dictyostelium discoideum]
MFNYERIDHGNGKGTGVSIENRNLSTGYLTVNFKDTEGRILSVKFNSYININILLIYAPASIPRRNAFIIAAKNLIKDQK
IKHDIIAGDFNADHNNNSHYGIGIRSIIEESNLKDIGANNNIATFSRSNSRLDRIYCKPTMVGSNPLRVHEDIYNKSDHT
PISIDLKMNNNSANDININNIKIEKLPWTLCKETLADPTIHEEISQIIENNKQYINTLDDWIHFKNYTIRHHLKKQQNLI
KKEKNKKKSRLHRLIEREDLYPGQRKQLEDEMEELLKEEEANKQWETKLKLHLNQETPSRYLTSKLKKRKKDRSIFQIKN
KDGTIVSEKVEIAKCFLEFYQEQYDEKPDNESKHKELLDKWIVDKQYISRLSLDSAITPKEVNNAIKNSNPHKSPGLDGI
NAALYRNHSASLSTILAKVFNDTLTNQKEINPNFKEGFITTLFKKGDELQIANRRPITLLNTDYKLLSKIINNRLLAVTK
KIINKFQNGFVPNRYIQDNIQIMKEVIERANKSRNSTTLITFFDFNKAFDSISHKSIRRTLSHIGIPKTIVELIMNLLKE
TTNKIKINDFLVGHITVNRGTKQGDPLSPTIFALVMEALLIDILKEIEIKGFKLSDQKRIKLTAFADDMSTFNNSAEELK
LVLDKINNYCLGTSSKLNQEKTVMICIGNIPPNLPFKISEAPERYLGLNFTKVGLNSKITSIINSIKDSLNNWKSQATTI
RAKMTIVKTYALSRLSYHQYLDSLNESHITELNNIIKWFLFSAIKNTYTEEHKYRTLMTMDRAYGDWKEGGIKMWDLGIR
QVAFKVWNMNRLLHIIKIKACNILQEWYMEQISNSKYISIGLREMVDRWKDFRNNFAPQHNKLKSLPDCIKGQNKKPLQL
KEIYNMLITHKYKSIRKTDGQKNLISINNINIPSIFQHINHISHQKGRNTLFRFFSRSLPGINYERNVPCKICNNIIRDP
YTHLFIDCMQVKEIENIIISTFNNLSFFKIRNWDLNSLDISKTNKKERIYPNLIGIIIHQLWRIICHKLFNQDESKTPPS
FDPTLIEKELTNLIKIEKFILIKKIERSETIYKLNNRDQLIINFNTSWHNPNTPNPIPL
>Cre-1_NV_pol#LINE/CRE-II 45-3389 [Nematostella vectensis]
MSRGTKKVKWTDQMNKDLLECKRNALDLVASDNAPRKRNGRRKGYIEVMAELWEAKGYAHLAIKNQNLRDQAARLEKFDG
HTSARNIDENSSNIDTDELLSSGSSQTPTSAEYNQNNENERSQNANLPPTFRLDLHTPTPPQASREPIEEESDEMNETIS
MEVPGSLPDYIPVYSPETIVWGQSSGAPISINSSVIVNAYNEITTWRKNTFLDPYGKIGRDFIDQLTKHLNDWNNRSECQ
HIALKTFFVLLAIGLQKPSKTSKSKDHQECLGKRLALWKNGNIEELIREGRTIQRRLVQFHRKKDAPQNTAKVFAKLVME
EQINSALRYLTESDCGGVLSLTDDVMRQLQEKHPNAQPAKLGSLLFGPAEDVHESIYSEITGGMIREAALRTKGAGGPSN
VDAHGFQRILASKSFKKSSSDLCDALALLTRRLCTEYTDPMTIEPILASRLIPLDKGKSEVRPIGVGEVLRRIIGKCVTK
VLKQDIVESSGSLQVCAGQKSGSEAAVHAVYNLFQHEQTDAVMLVDASNAFNSVNRAAALHNIRVLCPTLAPFVINTYRL
PARLFVAGGKELVSAEGTTQGDPLAMSMYALSLQPLISRLQAATQVNQCWFADDATGCGSLDDVRQWWDTLQSSGPDLGY
FPNAVKCWLVTKPEKEESARKIFEGTGINITTEGRKHLGAALGSRPHLEQYVDSKVDEWVGQVTKLAEFAVSQPQASYAA
YTFGLKHRWTYFLRTLPDIEDLLLPLERAISDTLIPSLTGRTCTQAERDLLALPVRFGGLGITNPADEASLEFTASTKVC
GPLAEQIKQQTHELPCDDAVQEAQQEARREKNEYLKSRCAEVKSSLPVNMLRAVDLATQKGASSWLTVLPLREMSFDLNK
REFRDALGLRYDWEIPETPSICVCGDTFDADHAMICKRGGFVIQRHNELRDLEAELLSLVCKDVQTEPVLQDITGEELNR
GANTARDARLDIVARGFWERQRQAFFDVRVCHANAESYRDMNIDQIFRQHETEKKRQYATRVLEVEQATFTPLVFGSTGG
MASECQQFHSRLAELIAEKKGELYSTTVSWIRAKVSFAILRSALLCLRGSRSPRRAHVNIYDNDFEIQKQRANIF
>Zenon_BM_pol#LINE/CR1-Zenon 1-2961 Identical to  gi|34099638|gb|AAQ57129.1|  endonuclease and reverse transcriptase-like protein  [Bombyx mori]
MKVRKRKRVLSATPHSTFNVDFSNVRGLHSNLDAVHHHLETAQPALLFLTETQISAPDDTSYLEYPGYVLEHNFLRKAGV
CVFVRADVCCRRLRSLEQRDLSLLWLRVDHGGCTRVYACLYRSHSSDAGSALIEHVQEGTNRVLEQYPSAEVVVLGDFNA
HHQEWLGSRTTDLPGRTAYDFALAYGLSQLVTQPTRVLDIEGHEPSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAATP
LSRPSRRTTTRYRRVWQYLSADWDGLREFYASYPWGRFCFSSADPDVCADRLKDVVLQGMELFIPSSEVPVGGRSRPWYN
NASRDAAHLKRSAYVAWDDARRRRDPNISEERRKYNAASRSYKKVIARAKSEHVARIGERLKSYPSGSRAFWSLAKAAEG
NFCRSSLPPLRKSDDSLAHSAKEKADLLVKLFASNSTVDDGGATPPNILRCDSSLPEICFTQCAVRRELRLLDVHKSSGR
DGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINIQLLKY
LEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDWVWHRALLSKLPSYGIPEGLCKWIASF
LDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLV
SEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLAS
KMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPGLTDRLEPLGLRRDFGSL
CILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFK
RGLWRVLSGRQRLGSAPGIAEVHGRR
>Dong-1_NVe_pol#LINE/Dong-R4 47-3433 via tfasty with Dong_FR_pol, 1 stopcodon. [Nematostella vectensis]
MKMSSNSNRDNDVNENGGVLSSGREGVGGQAPLGRQQTTGRRKWNNALYRVVMECYFESKPGTRGYRRRMLNSWQNRGMF
RLSEQNLADHARAIRNNNWLSDIELEEIKRQVNNVEGMESNNVVVDEVEVVDEGDGQQDQGVNDEQRFESSGDEGTNEFQ
ALNVEELxARQREILDDIKRAFEEGDVEELRSLKHVERSKLREVSQEVNKVLEHIKTVDITGTNRLVRAAAIVVIQRLGL
KKRSNQPRKEPFWKRRIRSKIDSLRKEISKLESSKTMQKKGGRGLTQIMKKHQVKKKGLNVVIEELKQRVLASAAKLKRY
ENRINQFRQNRLFQCDQKKLYQELDGINMENNIIPDPQESCEFWKSIWENQSEHNREAEWLDDVREELSQHVPQEDVVIK
EADVKKQLKKVANWKGPGLDGVQGYWLKNFRALHHPIAEQLNLILESGFVPQWMNQGRTVLCVKDLTLGNTAENFRPITC
LPLMWKLLSGTLADKIYDHLENAEMLPVEQKGCRRASRGTKDQLLIDKMVLRNCKRRKTNLAMAWIDYRKAYDMVPHSWI
LETLNMTGVAPNIQLLLRNSMLNWKTTLTSSGQTLGEVKIQRGIFQGDSLSPLLFVICLIPLSIILRSASGRYQLGKDAG
SLNHLLFMDDLKLYGKNEREVDSLINSVRVFSSDIGMEFGLKKCGILILKRGKVVNSDGIELPDGQKMKTIENEGYKYLG
ILEYDDLLHGKIKEDLSREYFRRLKKVLKAKLNGKNTIMAINTWAVSVLRYGAGVVKWTKTELENIDRKTRKRMTIYGML
HPRANVGRLYLPRRCGGRGLIGVEDCIHLEEKGLADYVHKSEEPLLLAVRNEGILRVEEEQTARVLKEKLKEKRQEDWKT
KPLHGQFLRQTEEIRDESSWDWMTKGNLKKETEGLITAAQDQALRTNALKAKIEKQQISPLCRMCGLKDETVNHLLCECS
KMAQSQYKHRHDNVARIVHWAIAKEHGFEVKEKWYEHELLPVIEKPDLKILWDVTIQTDREIQARRPDIVIVNRKEGECI
VIDIAVPGDANVGEKEKEKVLKYQDIRREIARLWDIKTCVVPIVVGALGTVSKNLTKHLSSIGLKTRIELLQKGALLGSA
RLLRQVLEV
>EhRLE3_pol#LINE/Dong-R4 gi|34392539|dbj|BAC82597.1| reverse transcriptase [Entamoeba histolytica]
MMKYGKMQHLNKSKEDEYPDNISTINFWKGIYETNTNIDFLNINLYEILNENRINNRMSIITPNELDCDTKFVDKFEIKL
KMIKYKGFWIKYLEQPKKYLLKLFNEWLNNPNEILLHFIQGRTILIYKKGDKLDTQNYRPITCLNCLLKVYTSILKMKIE
NQLMLNPIEKQLSLNQIGCKKYTYASKEGLLYNTIINQLLLKTKWKWVETYYDVSKAYDSINHQWIKQCLIYFNILLVVI
NSILYILNNTYLNLYYNQESDNMINVERGIIQGDSLSPLLFILSIDVLSKQLDKQISKLNIKMNGEEKQVQLNHILYMDD
LKIMTNSLDEMEKAHKLTKEIFNAIGLKINLEKSGIMTNISGKINGELDELPRVTNDNPYKYLGIEIGDKININKYCTRI
LNDVSSILSSLNTMKYSSLNTIRKINSDIISKLRYGFCIVPWKLGELEKIDKQIRKSLIQLQLYSRNIPKSRLFVKKNEL
GLGLMSPRDECGKELLRIYLKYKWRSSTEIGEMIEAIKESPNGIIKRMKKAFGKNINFNELMNVIELNERKHNVKEIFEW
INNELNDRYLNEWKEKKCGEYIRCANGTFNDKKLTVATWRSLDIKRNEFLQIVKMQEGVTMTGNIKSKILQNDALKYCKH
CPNTIASISHILLGCPVMKKNQISKHDYVCKQIFKHILIIHFNEFDAIDFDNPPKCINNDKMVITYNKDLIVSDHSFHAR
RPDIYYQNMKEKKGYIIDVAICQDNNLELNYIHKINKYKELQEKIRNNRELIYVEIIPVILSINGLIHKESVRRVKSLKL
K
>Dong_pol#LINE/Dong-R4 419-4006 Previous name: BmRP2_pol[Bombyx mori]
MLRRGRIFLPASTKAGKTRGRMKWSREVNLFIMRTYYYVTKLETDLTIYRKKLHEHFSLKYPNVIISQQRISDQKRAIER
NKLLSQETLDRLKEEVRKQLEDEQTNNVENEKLNSETYSHEYTTLTPQTILTKKTQQHTNIISSTQTSHSSTQTESITLL
LENEVDILNTNPTEGATQTQEVKDKFETNLTMYSGMDPKARPPLPKLKYSSKLNELIRLFNNDILVDYISPDTQLSDVHT
LTYCTAVTISEQLKYKIIAIEGNARHKKNFKPPWQQRLEKDIAKLRADIGKLTQYINNNRSKKVVQSVEQIFKNTKIHTS
HENGNKKSQEFLDTLKQKLALKAHRLKRYNNSQKRKNENTIFLTNEKLFYRNLIKPKTDRDNSNIDIPTAEQLEMYWARL
WENSAKHNDKANWITEEKERWDTIEEMQFDDVTEEEITTITARLHNWKSPGIDKIHNFWFKKLICLHKTIAKNLTDIISG
NQSIPEFIATGITYMIPKGDFSIEASQYRPITCLPTIYKILTTVITKKINSHIEHNNILAEEQKGCRRGHMGCKEQLIID
STIMKHATTKNRNLHCTYIDYKKAFDSIPHSWLIQVLEIYKINPIIISFLRNIMTHWQTTLKLKNPPNFVTTRQIAIKKG
IYQGDSLSPLWFCLALNPLSHQLHNDRAGYRIKQQDNTETIISHLIYMDDIKLYAKNDKEMKKLIDTTTIFSNDISMQFG
LDKCKTVHIIKGKVQPGDYTIDDTNTITAMEPSDLYKYLGFQQLKGLDHITIKQSLTSEYKKRINAICKTKLSGKHLIKA
LNTYAIPILTYSFGIIKWSKTDIEQIERITRTTLTKHNNLHPKSAIERLTIKRQDGGRGMIDIWHLWRKQIHSLKTFFYI
KSDLSEIHRAIAQNDNNYTPLNLKQKELIDNTENLRNRNPQKDMEENWKKKALHGRHPHDLSQSHIDSKASNMWLKTGSL
FPETEGFLIAIQDQVINTKNYRKYIIKDPTIRDDKCRKCNTQPETIQHITGACSTLTQTDYTHRHNQLANIIHQQLALKH
KLIQNTNTPYYNYKPQTVLENDSCKLYYDRAILTDRTIHYNRPDITLQDKNNKVTYIIDIAVPNTHNIQKTFTEKMTKYT
ELKEEIVRIWKQKKAYIVPIIISTTGVVPNHIHNSLKLLDLKDNIFISLQKAAILNTCRIVRKFMQLEENQTYYTQ
>CR1-1_DRh_gag#LINE/CR1 504-1484  [Drosophila rhopaloa]
MAFCSLKNCKKVISAGQQSIPCHTCDKIYHAKCLGYSGLVRDAIDKRSGLRYYCDECIVYENQAIXIRRLTKSSVTELIR
NCRKNTDLLVALESQLTSRMLAEPDSPKRKKVAVGGHSMAGAVQPAARDSIPAQLPILGATQMVLRSGAKSDSVPEVAGT
DVAPLGTSALSDQNKVVAPTPHVDLTSGLPADTGSTDTNSVVPKRVACVVPKTVTCVRVPQLKHVFVSRLAPDLSSLDIT
AYIRNKIQVDDLKVEQFKFSYARKVSSFKIGIPCALFASVCSASFWPEGIFVKEYEAKRKKNSSGEMENTIKEPSPAPST
SSSVPKN
>Gemini1_EI_tp#DNA/TcMar-Fot1 153-2204 [Entamoeba invadens]
MENENMPVNPVMDNDIHVVVPLKLVDIMSPKFIENHPESKIQQDSSKIIQLIEGLNNKEEMFKHINEAEKSIKEQHKIYF
SQNDIENARNISNFLCDDEYFFQLPSRREQIGVIFAIFEKCQGASNRSVGILFGIHHNSVRKESLEYKKDCKMGRRQTGR
PSLFDERLTIITKAFVNYCSTQKLALTVGSFASVAKMVTGYNFKRDTLRKWVIRSFELKSVTGSPEELGRLFIEPKDILE
NYLNLTQFNGFDMRFVFNVDEIGFQDFADSTSVKVFVPKTADVSKIKIGVGRSGKRSSVICMICLDGSLVCPGMVITNQK
IHIDVLRRFPDVSFFQSQTGFVTKQIFSDWLLLVVVPFIETKRFLFHLSRDTWALITLDGFSGHDFETLKDILLDHYIIL
HKYTAHCSHLIQPLDLCFFGNWKKKCSTITPIYRTSVSSSFLPSHYQQHPEQQNSEEIGSQSLVSAMKDLVETLTNNNNI
SADALRDKGKRLQSGERLKNSIIKTLNALDAANTHEAVISSFERAGMTTRYIGGKFKFFVNIQSATRLINEFQTYFEQNV
FSNTSLISKLTAPNNDLKMIPIAQLSPKHKKMTNEEILGHLDTISNMITEEGLDECGYSMIKSSLKTLCTYKPVYHNQTG
YQFMPPLPLIHPRIQIPNIDEFDLENDDWIDLEYGSHYNTEDE
>MarinerL-1_AO_tp#DNA/TcMar-Ant1 261-1238  [Aspergillus oryzae]
MAPNLAPSQHQIICDMIKCDPSLTNAQIAEAANCSTRAIPRIRSNLRLFGSSKAPPNKGGRPRSISPIMLEALCDHLLEK
PDLYLDEMAIFLWDEFQIYATTSSIRRALSSKGWSKKAARQKAKERNSDLRDMYFHLISDFHSYQLVYVDESGCDKRAGF
RRTGWSPLGTTPIQVSKFHRDQRYQILPAYSQDGIILSRIFRGATDTSVFEDFIEELLLQCGKWPEPRSVIVMDNASFHY
SERIDQMCLEAGVKLVYLPPYSPDLNPIEEFFAELKAFIRRHWSVYEDSPEQGFDTFLEWCIDVVGARKQSAKGHFRHAG
LTVEES
>Mariner-3_AF_tp#DNA/TcMar-Fot1 115-1725 via tfasty with Tan1_AA, 1 stopcodon [Aspergillus fumigatus]
MPLSKENRMQMAISAYKKGQFKSKAAAAKVFGVSRETLRDRLRGIKPRAETRANSHKLTALEEEALAKRLLDADRRGFLI
RPQFLRGMAHILLCARTNDPTSVIGVNWAYKFIKRHPALRTRYNRRISYQRAKQEDPKIIKQxFELVHATIQEYGIHEND
IWNFDETGFAMGLCTASKVITAVDRSERPRTVIQGNREWVTIIECVSSKGISIPPVVILKGKEHQAPWYQESNLPPDWRL
TNSTNGWTTDEIGLKWLKEVFNPFSSLHSTGAKRLLILDGHSSHQTAEFDDFCKENAIICLCMPPHTSHLLQPLDVGVFG
PLKRSYGKLVEGMMVAGNNHIDKEDFLYLYPPAREAVSNQRNICNGFKGSGLRPLNKDQVLEKITFQLRTPTPPPLIEGS
ISSAFQTPQNPRQLDHKVRSLQRSLQKRKLSSSPVSHIQHLEKAAQMAMSMNLLLQQEIKALRAENEWKLKKKVRKHASL
GNDLFLSIQEGRDRIQQLNEQVDEQVDKPIPEPRQRAPPRCSGCWTIGHTIRNCPSK
>Gizmo1_EI_tp#DNA/TcMar-Gizmo 451-1488 via tfasty with Gizmo4_EI, 1 stopcodon. [Entamoeba invadens]
IQNDNCKSLLTKLRKGDSILPKNHYNKKSRVTPYQVxVGRLLENDSTTKVHQMREYIKGMMVMDDIVNVEDIVEIREETF
KEIVEHPEIIVGIDKKMEKKNKIVPSITSITNFMRGKTGVDEDRELPILSFKRETTRGAESNSEVNKDKRINAIQKLYAR
MCEGYSWVCLDETLWRIATTSAYGWSERRKKCFITKSKRGLRLTSVCAIDVNGMSYCDIVNGINDKPLFNTYFKRLMQYY
DQRNVRVVFFWCDNCGIHNDIEELVIGTRHCVVFNAAYSQELNPIENIFGIWKRRAEREIRTWTTLESLLEKLSNAFTSI
ETPDVVASLERCRNTVWQKVFSRDNL
>POT2_tp#DNA/TcMar-Fot1 166-1758 [Magnaporthe grisea]
MKQYTEKQLISAINDVNNGNPIAKTSRKWGIPRSTLQSRLKGSQPYKKAQSPFQRLSTEQEKHLADWVLTQTALGLPPTH
QELRFFAERILQAAGETKGLGKRWITRFLARYPILKTQRPRRIDNARVNGATTEVIKSWWLYITNPVINAIKPENRWNMD
ETGIMEGKGSNGLVLGLNGIRPLQRKEPGTRGWTTIIECISATGVALPPLVIFKGKNVQQQWFPTDLSPFDNWQFHATEN
GWTNNQTAIEWLKKVFIPYTQPLTPEKRLLVLDGHGSHITDEFMLLCLQNNIQLLYLPPHSSHVLQPLDLSVFGPLKEAY
RRQLGFVSQFCCSTVIGKRNFLLCYRKARLKAFIAKTIQSGWRTTGLWPVNLVKPLLSPFLLENSNANVIKDKNNGLQRD
KTPESPAQKINDPSLLIWKTPKTTRDIRLQLQKLSQSNKTNATSRLLFAKVQKSFEAKDTLLASAQQKISLLEAQLEAIR
PVKRRRVVPDPNELLVNKQNIIGLQENDIENLEPLADEEEVNEPEKRENDCIFVR
>Tec1_MC_tp#DNA/TcMar gi|397762|gb|AAA62601.1| ORF1 [Moneuplotes crassus]
MSAAVEILNNEASKRYEQAIKHTEDKKLDRIDINEQAAHQIPKLDIYVHKSCFDAKVKTKRGSFRSKNMKKFSSNIIIIE
KMLMVDERSLEYVSKWLGMSVKTFKTCLDRYFRSKSINKDKSRENMKLKLQRSARVKELAELYISRKQGRCITTKAIRDF
ANEEIKDNSIKEFSYYEIKRCLVDDLGYSWQRGNTRPPSSLRPNIGEGKQVFKQFIKQLEVCKFTVVYIDECSFNRSALP
LYTWHAKGTEAPKLIRSSNQRYNCIAAQVCNHKLFHVKQDTTKEDSFIEFLENLHDKLRTILSKRQLSKRTIYVFDNASI
HLTQKVVKCVTDRKMVCFTIPPYCPELNKVEHTFGLLKNNLSKDNLASRDFLYLIKKNIEGC
>Sola1-1_BM#DNA/Sola 712-2962 via tfasty with Sola1-3_AP, 2 frameshifts and 1 stopcodon. [Bombyx mori]
MNRSAQILKMVFSEDQENPVVYNKPIFSPLDTVRSLVKSDVNNISNLNSHSYVSDSQIVPYFMKNDLPGPNNVDMEPTVN
YSESVSSNQIQLSDLQRPRLNKVVPESNCSSEYNDDNSKSEYSNSQNDFSSDDVDNDPDFLYKDLELSSTSEDESITMSN
RREKIIEIEQEKKKGRKRRAVPKEWKKNKAKLLRNSGKAYLSSSKSKKLMKERELKPTCNDKCKLKCFNKISEEKRQIIF
SNYWKMADLEKQRQFINKYVKAIKPKYRYIREGSTRKDYNHAFYFEVDKEDIRVCKTFFKNTLGISERPIRTVIYMQNSV
VGGFLAGDNRGRHGNHNKLDSTVIERIKEHINSIPRIESHYCRATTSREYIEGGLSIAQLHRDYVEKCRAESRSYADYQI
YYNIFSKEYNISFxSPKKDQCEDFAAYDNAEDKQPLEDKYFSHLEEKDLVRKEKELDKKNTNNKCIAATYDLQAVMPCPR
GDISNFYYISKLNVLNFTIYELGSKDVNCYVWHEGEGLRGVNEIGSCVLNYLRRLQEQSKEDFQVIFYSDNCCGQQKNKF
MIAMYIYAVTNLKNLTSITHKFLIKGHTQNEGDSAHSTIERNISRSLKSAPIYVPEQYITLIRTAKKKGNPYKVHELNHE
DFFDIKKIADGIGPNYTTNEDREKVKMGDIKVIKVEKRYKDTIFYKLSYKENDFKTVVIKTRTTKKNTEFTELERLYSSK
LGVSNNKKAGILTLIDKNIIPRFYKSFYENL
>PiggyBac-11_SM#DNA/PiggyBac 241-1773 [Schmidtea]
MADFVEHIADNGSTLSSDDEFDMETDIEMENDDENDIWTNSSFVENKFEYSLQSRMCIAHIDNMQPIDYFMNFFDETLMN
IIVCETNLFQRQNPIPHREHMKKWQDTTLQEMYIFLGIILLTGMIGKRALRDYWTTDFLFQTPVFAKIMSRNRFQDLLRC
LHFNDNRKKDNDRLFKLNPIVNYLKQKFRFCTVPSQKLCIDESLLLWKGKLSFKQYIPSKRSRFGIKMFNLVDCSTRVLL
DFIIYTGKETNIRIDKSIGFSGSIVMTLLLPFLNKGHILYVDNWYSSPSLFTLLLKKRTGAVGTVRKNRKHLPKLQAKLA
KGQTQQLNNGKLLYMKWLDKREVFMLSSIHQPTMAPTGKTDRNNQAIVKPTCIIDYNQNMGAVDQLDMQISFTEVIRKTV
KWYKKVFFHLLDLAAFNSYALYRKKEKSKMTHLEFRKTLVRQIFEKFNVFENLPSGPSVRAQHFPGQYTERDNSNRIIKH
RCNVCRSLTTWNCETCEIALCLPGCFKTKHS
>Sola1-1_PPa_tp#DNA/Sola 12321-15194 [Physcomitrella patens]
MKWLFLSRGLVNASEYKVYMAHSSGDDFEDAESISPAVPECEGLPRRLWITKCVTLYNAHGKLVGEGTCHSVNSDLVLGA
NGPLGDTQVAVHICKTHSQDDIPQDLVYALVAWPTKLVHCHGASLHDHEAKDNFNQLHAARANSALSKSKRPYMNGIRNP
SQESPLKYKKLLSEESINLVSSKVCCMRNCVQPFPREKIKSFRERMYNGSTFQFRAHMKLDVHRAVHRDASGRKMVTVEG
ITVCLRAWMHISGVSEATFYRYQAYVKANREARDHGNTGLPKPRKHTEQATATLKCILEKEADHMPHRTRSTKSGEKMVS
MILPATFQWKDQIPKINEVNTAFGLREVSSSNLSKIRASRFPEFDVKRPGDNFARCGTCDKYKELRKGAIGGSEQAMKWT
RKLEKHLGIARAHREYYYAKRYYSQTYPDECVTIMHDKMDHAKTASPVFSHKNKELDALVKLPVSVTGMIAHGHGDVRYA
HYGLDIFPHDSNYTIGSMTKLLRDLEEPPKSSSRELFLGSGSTALFRSILKGAEMCKTSLDPQPERLVGATPLPPILNVQ
MDNATGENKNRYVFAFWSLLVAKRIFREVYVNFMIVGHTHDDIDALFGRWSMLLKKENFPTIPALMKSFMDVESIPTIPH
LIEEVPDFKNFILGSILDKSEVLVGHTKPQQVKFYLDATGCPKMKYKLFCTDVEWLGEEGAGIKIWKEDAQGCSLWPRGE
PSPVPQRTMRGVEDIEKGISGFVKYWEDLCNVDVTGEYRRRYEHLVVYWRNVKDALHEPIIPCNVLREGFWPITRVRENL
ADQLSDDGEDHEEFGEDDPYVGPLRGRPQPSFRVGRDVREGYFVAIRPAEGEIQPVWIARALSNPDCNPEKPNCILIQYF
HPTLRSVDVQQFYTGWDSERGLHWKIEENEPPVWEETNALMTAWSPRIRKDTSECVIKIPAPQIEIIKQSLASYIKNV
>Sola-1_DK#DNA/Sola 713-2445 via tfasty with Sola1-7_AP, 1 frameshift. [Drosophila kikkawai]
SDSDDNDEECCVGERGLKRKFAKQDVQKFKIKNAVLPNPCKLTKCGNDCLSVPEHARQNINELYWGMSNERRVTWLLSNI
KRKEVKKRRAGLKTKCVHRRNWTFEYSFSSNEKIFKVCQNLFMKTLNISQMVIRHALNKTNSCATPKKKTPHNKTDVSNI
EIVKDFIKKLPAVPSHYCRKNNTKVYLPSELRNVSNLYKLYISYLNDQGLNDTSVSCPIFRKVFSTEFSIGFHLPKKDKC
TICENIKYANEEEREKIISSEEYQNHIRNKKLSMSMFLKDQDDSKMCQQFLCVSFDLQKVLHTPFSKNITLFYSRKYAYY
NLSLYESGTRNGYCFLWGEVDGKRGCNEICSALLKYLIILDSKKKTEHLSLYCDSCAGQNKNQAVIAMLIYFLSSSTFLK
TIKITYLLPGHTMMPVDSVHSTIESFIRNRNVWAPSEWPTLIGNARTNPTGFTCVELQYTDFKNWKLFSNSLLKHKTLHL
SKLRIAVINKCPLSIEFNYEYFENSNKYFFNLPNPTQTIKSLYKSKLSISKKKFDDLNNLCKQNSIPPRYHNEYTSLRHS
SKILDCLNETDEEDDIVV
>Sola3-1_HM#DNA/Sola 1143-4145 Via genewise with Sola3-3_HM, 1 intron (1255:1353) [Hydra magnipapillata]
LKIHQETEWTEKSLIENRGCISISDNDYICPYHRFNFGIGWVPPRRCCHPMHELSVGKKSSAVRSVSINMSTNVSKHYNK
SVPVGSVFCHNHLKSERILNQTKTSTAANEELVEDTTDFDFEPKEILLSGEKVEGATFTGNNLSEALHISPFQFQIKNKK
ISDLSNGTKKNLRRKFERAKVQLEKRFAEAVAPNQSEDFISIVLKRSLETSDIDVVPDDLKKLVKIYEESDSMGKHIVLC
LIEHEKFTKKLLMKVFGCSKYKIDQVRKMKNANIGITIPVEKEIKRNRLDQKKAEHFLDFIFNSNLLQDVAYGVTKIKFD
SNDVYKISRAVLTAKMSHTIAFYNEVCRNENYSPLSESSLWRILHAVKPSQQKCLAGLDDITAAGMNGFSMMQDLSLKYK
DRELSNMFERSKRYYKTSFQFNCSATYPNSISHCPIFALSDLTNKQLQQISIAPNDKICYECENLNKSLVEIKRLASNNS
ADEDTIYDIEIAEKDIIDYKKHLMRDCQQKKAKVFAFESLDEESGFWLKDYCQKVLPSKFREGQKEYFGKKGMSLHVDIF
FTKKNNVLQKKVYFTALYRCEQSLSETLSIAQLVLPKFKHDHSGVNKLYAKSDNASSYHGNFIMEALFMLCKNNQIQLKR
YDYNEPCRGKDQCDREAAGAKSLIRSFVDAGNDLVCAEDIYTALHYGHGMKNSAVGVATIKGKSKLSGTKIAKISQYHSF
EFFQNYMTMWRYYAVGDGVIQEYSNVNFGLQMLLTHPYSDTDKKTRVFKNNMKEKLREDRSLNLFHFCSEPICNGSFNTS
EELEEHMMSGRHIISTLKSGMDNVRQSFIMKMQDQSNLHSYKPNSQQEVFEEVCSDISKYVKGWALPTRSTFRYSMRQKD
ILYKLFMEGEVSGKKFSPEQVHLLIRKELQVSEYVTTQQIRSLFSRWSRLKKDNRLSEPIDVGSTNADNEEEEETADQGN
NFYIYSH
>24373700_SO#DNA/TcMar-IS630 gi|24373700|ref|NP_717743.1| transposase, putative [Shewanella oneidensis MR-1]
MAILPPLCRAERKQLQKLLHKTKDKHFARRLIAMLMLHQGQSITDVHHATGAARSSIGRWLAWYTESGVDGLKSLTLGRP
AILPIDPILLCLSLLIQLCPQDFGYQRSRWSSELLAMVINAQLKLSIAASTVHRLLPKAGIVWRRSAPTLRIKDPHQDEK
MAEINQALEQCCVEHPVFYEDEVDIDLNPKIGADWMPKGQQKRVVTPGNNRKHYIAGALHASTGKVLYVSSDSKASELFI
AMLEKLKRHYRKAKTITLILDNYIIHKSRKTVAWLKHNPKFRLLFQPVYSPWVNKIERLWLALHETVTRNHACRNMRELL
GMVWHFMGTVSPFPGSGHGTAKM
>Mari2_Pca#DNA/TcMar-Mariner 192-1252 via tfasty with SMAR31, 1 frameshift. [Procavia capensis]
MSELELEQRTNIKFLVKLGKSGSEIRDMLVQVYGDNAMKKTAVYKWIKRFSEGRESVTDEERSGRPVTSRTDENIAKIRR
IVRQNRRLTVRSIADQVNIDRETVKILTENLGMRKVCAKMVPKELTDEQKQRRVEVCQDLLERQDDVLGRVITGDETWVY
QYDPETKRQSAQWKSANSPRPKKFRQSKSRVKTMLLTFFDIRGIVHYEFVPTGQTVNQVYYLEVLKRLREKVRRKRPELF
ANNSWLLHHDNAPAHTALSVREFLASKQITVLEHPPYSPDLAPSDFFLYPKIKEILKGRHFDDIQDIKGNTTTALMAIPE
KEFQNCFEGWTRRWRRCIASQGEYFEGDRSDIQQ
>ANM4_tp#DNA/TcMar-Mariner 382-1324 wised with Kusmar1  [Antheraea mylitta]
MDTLKIRIIMEYEYRRGSNAAQEARNMXIDVYGANTTNQRTTCYWFARFPXGNFDLKNEPRGRPKTMVDNDELKAIVEAD
DTQSTAKLAAAFDVSVKTILVYLREIGKGKKALQXWVLHELXDSXREVRVETCLALLNRHTNEGILNRIVTCDEKWTLFD
NCKHSASWLDPVQHLNXCPKRELTPRNLMVTVWWCSAGVIHHSFLPNVVSITADMYCEELNPMMEKLARLQPALVXKVSP
LFLQDNARPHTAQQTVSKLQELGLEVLRHPPLXPTEYYFFQNLDNSLAGKXFNTREADKMPLKEFVASRSADFF
>Mariner2_CE_tp#DNA/TcMar-Mariner 84-1169 [Caenorhabditis elegans]
VVSRSGRPLSEKIHFIHFYFATMTIIKLERRDVRLLLLYEFRLGHSAMEAERNICGAMGEGALSYNTAKSWFQKFKNGDF
SLEEIERSGRPVELNEEDLVKLVEEEPRLSLREMEEKLECCHSTIARHLGRLGFTSKLGTWVPHELSASQKLTRVNVCTQ
LLTFRRKFDWLNNLVTGDEKWVLYVNHSRKRQWLPIGEKGIPTPKPDLHPKKIMICVWWGVQGPVHWELLPTNKTITADY
YCAQLDRVAEKINGKYEKLYFLHDNAMPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEH
LKTELSTFFSSRSPDFFSRGIMMLPSKWQQVVDTNGEYLCE
>Mariner-1_DEl_tp#DNA/TcMar-Mariner 143-1165  [Drosophila elegans]
MEQNKEKIRHILQYYYDKGKNASQAANKICAVYGPDTVSISTAQRWFQRFRSGVEVVEDAPRSGRPVVENCDKIAELVER
DRHSSSRSIGQELGMSHQTVINHLKKLGVTKKLDVWVPHELTQKNIFDRIDACESLLNRNKIDPFLKRMVTGDEKWVTYD
NVRRKRSWSKSGEAAQTVAKPGLTARKVLLCVWWDWQGIIHYELLPYGQTLNSDLYCQQLDRLKAALMQKRPSLINRGRI
VFHQDNARPHTSLVTRQKLRELGWEVLLHPPYSPDLAPSDYHLFLSMANALGSLKLATRESCENWLSEFFANREASFYER
GIMKLASRWERVIEQNGAYLT
>Mariner-1_AN_tp#DNA/TcMar-Mariner 71-1267  [Emericella nidulans]
GLQSTAFLIQPSFEASKTSNIAILLRSMVVSIANMAIPRPSTPPEAPLEVTEISERSQSSRWLSRDDRIRILTLRDAGFT
YQQISSQLGFTYRQVQYTCQNEQSTPRKPPGQRPKLSEEDMDNIITFISSSQRTRRLSYKRVIEELNLPCGETALARALK
KRGYSRCKALRKPPLSDDTKRVRLAWALEHVNWTIEQWNRILWSDETWVTPGFHTRIWVTRRAGEELDETCIRSSTPKKR
GWMFWGSFYGDTKGPCLFWEKEWGSINAESYCERIVPIIDGYLRLNRQQGNYLCLMHDGAPGHASKDTIAELHERSIYPI
SWPAFSPDLNPIEMVWNWMKDWIQERYPDDRQLSYDALREIVRASWDAVPTDFLKGLIGSMQARCQAVIEAEGGHTKY
>52548731_arch#DNA/TcMar-m44 gi|52548731|gb|AAU82580.1| hypothetical protein GZ18F2_10 [Uncultured archaeon GZfos18F2]
MTQQGKAILFEQKQYIINLKKSFDLERKKGSVVSTKDSIGRITRCLDIGRRTVENIISEYNKNGQILIKTPPKTRGKPPL
KVSGDLIPFIRQHIRSANLQGQHISVRNVRSWLLKEFNADIPIMTLWRSLQRVGFVYGKNKRRCALKEKEYVVTARRKYL
RKKMANRKADGTLIRPEVYLDETFLNKNHSNDKTWYLLEDGAWVNKPSGKGPRLIVINAITKDGWVDGAKLVFQAKTGAG
DYHGQMNYKNFSKWFAEQLLPNIPGNSIIIMDNAKYHNILSDDTFPTPRSYKHELQAWLKKNHHNLGLHDDKSMLKPELY
EICKKIAPPPVFKIDRLAEKFGHKILRTPQYHCELQPIESCWGVVKNYCRDHCEFTMKSLYKHLDIGFSKVTKSTCQKLI
KKIWQQEDLFWTEDTEADERVTIEYKYTRLSENYIDFEDEVY
>IS630_ST_tp#DNA/TcMar-IS630 gi|17233422|ref|NP_490532.1| putative integrase protein [Salmonella typhimurium LT2]
MPIIAAIPDEERQLMRKEAQQTHDKNHARRLIAMLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRA
PRWPVADILQLLPLLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIKDPHYEEK
RLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKHYLAGALHSGTGRVHYVSGSSKSSDLFI
SLLETLRRTYRRAKTITLVADNYIIHKSRKVERWLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLL
KQVAQFMNAASLFPGNQQGLAKVER
>26247122_Eco#DNA/TcMar-IS630 gi|26247122|ref|NP_753162.1| hypothetical protein c1248 [Escherichia coli CFT073]
MLSNMKIFITEQQKAELERLHDSSRDGRVRDRIKAILLASEGWSSAMIAQALRLHQTTIDHHISEFLNKGKLKPENGGSD
SKLSAEQTAFLISQLSDNLFHHTRDVIAFVTRTWNIIFSIPGMNKWLHRNGVTYKKPSGVPHKFSEEKQRQFIEYYKELK
TTVGDEPILFIDGVHPTQATKISYGWIRKGQKKAVKTTGSRTRLNIMGALNLKALTSPLICEYKTINEYNVSRFFNEIRK
VYPDYNQKIHVILDGAGYHRSQLVKDWAEVVNIRLHYLPPYSPNLNPIERMWKLMNEHARNNRYFSSTREFREAISVFFN
QTLPDIADSLTSRINDHFQVLTPAS
>53610985_AV#DNA/TcMar-IS885 gi|53610985|ref|ZP_00089628.2| COG3415: Transposase and inactivated derivatives [Azotobacter vinelandii]
MRQQAIKAVREGQTVQSVAAAFGVNIRSVFRWLSDFANGGQNALLAKPVPGRPPRISAEEMRWLAQAVRDHSPLQYRFEF
GLWTLSLIAELIRRQFGKTLSLSAVSRIMKLLGFTAQKPLYRAWQQDAALVRQWESETYPAIRAEARAAGARIYFADESG
LRSDYHAGTTWALQGETPVVEVTGRRFSVNMLSAVGTRGEFRFMLHDGTVTASVFREFLKRLLIGAEQPVFVIVDGHPVH
KARLVRAFVEEQAGRLKLFHLPPYSPQLNRTSRSGGTSSAVSSGVLCRTGRK
>Mariner-5_ADi_p2#DNA/TcMar-ISRm11 2021-3620 R,  via tfasty with Mariner-4_ADi_p2, 1 frameshift. [Acropora digitifera]
MSLVQIKVIYDYYSSKRVTPFFIEEEELLEYDFQAFKERLVKEVPHLAKITSLSAAPLRITMNDEKNEVDLSPVYFTFQF
KDLLSKAKNITLQAFTFESPSVQGVGTDRCEMTTNPPPNRPKHLPTLLETPRAKRSLQLKGRSKAEEYESANLCGEESCE
TNDPNDQKFGKTSGMCAPTKSQDNTNQQTPLERYLSKTEEQINNKQEIIEHLQNKEYEILAKLERVKSDPRDGNLCRNCH
LRLGHSARTCQFGRCTSVFKCGEEKYHSGEINMKELRNQIKKHESELSKLRSELDNKRMALATMNEKVTNKIESELFQAN
RGNYLLNGSKNWSLLRKHVYLVEQYSKKHFGGKIPAKKDVTAVLEKALESSYGELSCTTNMSRSKQKRNREENPAKSALE
RRGIKFPRLSEQDCIAETEEVNKPSPILYTAPKDEKEEAEQLAIVMRESLHHEAANSTVAFPFFENDRYSTFPGPVLGYP
TPCYPFYNCEMASINYAHIAFMSQGPLTRAPQPPVQTPIQSLLIVLLRRNHK
>COG3335_TE_tp#DNA/TcMar-ISRm11 gi|48890492|ref|ZP_00324165.1| COG3335: Transposase and inactivated derivatives [Trichodesmium erythraeum IMS101]
MVIQEKKTYGYRERDEDKRKKFLAKIRDKRPEQLVYIDESGMDNREDYGYGWNELGKRYYDLKSGKRSLRVSIVSGLCEG
KLVAPLTFEGSCNRVVFEKWLREKLLPQLKTGQLVILDNASFHKSQKVRELIESVNCELEYLPPYSPDLNEIEHYWFPIK
NRVRKSEGTIENLRIES
>Harbinger_p2#DNA/PIF-Harbinger 1530-1960 via tfasty with HARB-13_SBi_p2, 1 frameshift.  [Arabidopsis]
NLAWNDEQTRFYLELRIEEKLKGNIRNQNVNDAGRQTIIDRFYEVYGKDIHGENLRIKFTTCKKQYEGFKKLTHNRTGLG
YYPNGSIRMSDDWWNERCKVYRFLNFFCPLFVLDQVLIVCLFSLFVKNGLELGNLKISQWQMWI
>Harbinger-5_XT_tp#DNA/PIF-Harbinger 327-1598 (1 intron) [Xenopus (silurana) tropicalis]
MEFAVGFFLECEEENQVCDRPRVMHPRVFRERSTLEGLSEEEIVRRYRLSRAAIYSLYEVLEPYLQPLTHRSHAVPGIVK
LLCSLHFFGNGSFQKVGGIYGGVSQPTFSRCLGQVLDAIRSVSGNYIKFPINRNDWNTVKREFYCVSGIPNVLGAIDCTH
VAFNPPLDKEHIFRNRKSYHSLNIQIVCDSKMNIMSIVSGFPGSSHDSYILKQSGLYADFESGKMPHGWLLGDAGYPCYR
WLMTPITRPHTRAESAFNEAHVRARSVIERTFGVLKSRFRCLDKSGGSLMYSPSKVAQIVVACAVLHNIANRHGLPGFVA
DDLDDPIHPIHRVQSADNRGNRVRGEIVNNYFACKYLQSLLE
>Harbinger_tp#DNA/PIF-Harbinger 3282-4496 [Arabidopsis]
MDLKETFRFLVEDDDMDLVLEEENNMYALVKELYGGKNVNTERQLVRINRGGGWRRVQRLMVESKVECFDILRMHQSTFR
TLCKILSEQYKLEESCNIYLEESVAMFIEMVAQDLTVRVIAERYQHSLETVKRKLDEVLSALLKLAADIVKPTRDDVTGI
SPFLVNDKRYMPYFIDCIGALDGTHVSVRPPSGDVERYRGRKSEATMNILAVCNFSMKFNIAYVGVPGRAHDTKVLTYCA
THEASFPHPPAGKYYLVDSGYPTRSGYLGPHRRTRYHLELFNRGGPPTNSRELFNRRHSSLRSVIERTFGVWKAKWRILD
RKHPKYEVKKWIKIVTSTMALHNYIRDSQQEDSDFRHWEIVESYEQHGDENDGHVPYVPTGDRVMENIRDSITTEMAKGT
RLPY
>Turmoil2_tp#DNA/PIF-Harbinger 3835-4657 via tfasty with Turmoil1, 1 frameshift and 1 stopcodon. [Caenorhabditis elegans]
MSRRWGLAPTTVANAVYHVTNAINSRMKCIETPKSAEEWRKVERTFAKKHILRCLGSLDGKHIRIKAPPHSGSLFFNYKH
FFSFVLLVVVDADGRVIWVELVRLTITIHYxYFINHISGSPGSNNDASIFSDSKLKTILDEEANLPPPTFWSRDFVVKPF
VIADGIFKITPRMMTLYGGNGLNISQKVLNKKLSRARVKAEHAFGRLSAKFRILRREMECPYEKSVDIILALCHLHNYLI
GKAEDVVNVPIETNMIPYKDGKEQRDYLCRYLNN
>MTIS112A_p2#DNA/PIF-Harbinger 502-1620 (1 intron) [Medicago truncatula]
MDPNNNHFNTQNFSNYPYNYENPNIYPNPNQFYNQRPQNIHQNVPNFGFSPNFNQSSSVPNFHPYYGSMMRYPSQTPPFN
GYMPMGNENFPSVDANQYPEFSTQITSGGMAVADEVTPEDSTPKSKRSKEPAWNTQQNLVLISAWIKYGTSSVVGRNQRG
ETYWGKIAEYCNEYCSFDSPRDLVACNRFNYMSKIINKWIGAYESAKRMQGSGWSEDDVLTKAQELFAGGKNIQFTLNEE
WHALRDQPRYGSQMGGNVGSGSSGSKRSHEDSVGSSARPMGREAAKKKGKMKSKGETLEKVEKEWVQFKELKEQEIEQLK
ELNLVKQQKNKLLQEKTQAKKMKMYLKLRDEEHLDDRKKELLEKLERELFEN
>Harbinger-3_Crp_p2#DNA/PIF-Harbinger 3198-4093 R via tfasty with Harbinger-3_AMi_p2, 4 frameshifts.  [Crocodylidae]
MAASPTPETAARGPNWTEQETADLIAVWGEAEVQWQFEPGNRANTHIYEAMADHMQERSHQCSGRQCHIRSRQSRAACRT
MPFMQQLDHILAPRDPGKACHMYSSTGGLPEPAPWPSNEEDSPGEGPLGHQRQVPGVLPGLGLTWQLRQPGPHLPWQLQQ
PHPSGEDRPGMAPALSSSSSSPEGATAVPRCPGTRLSLQPGTESDRWDCLPRPSGKPHTGRRAKGKGGATATRAHASSPA
HPQAACLEPVGPAGGGGLPLPSPLPPLPTLPGRAPPLPTGVPPPTRREAGGSSGLY
>Harbinger-1_AMi_tp#DNA/PIF-Harbinger 4005..5456[Crocodylidae]
MENEDEIRDDGEQRSEESSDMENMEDMGEQEEEVAVLLLQMLFTWGLLLQRLRRIGTVLQCSVASCVPGLTALMTIIRRY
RYPEDLEYTEESEEVEFDWALLRNLRRTRIRMVWARESSSDWWERIVLTTWNDQQWLEMFRMKRETFYHIVSMLGPHIAR
QDTNMRRAIPPDKRVAMAIMKLASPSSLRYIANQFGVAACTVGLATREVCQLLKEIAANKIIRLANPQQVIDGFNEKGFP
NCVGALDSTHIPVLCPAGRGRAFTNRKGYASVILQAVVDHRGWFTNIYTGWAGSAHDARVFRNSPLPGLVEKGHYAPGVE
ETVIRGVAVPPVILADAAYPLKPWLMKPYGGSVTDPQKLVFNYRLSSCRMAVECAFGRLKGRWRALTCRLEMEQENITAF
VVAACVLHNICESRGEVFKESWEEEARQAVARQQRRVGQQQHRDRGDILKERLVGRPLCVIVWQDILLTTTPRSALFFLL
VMLK
>Harbinger2_TP_tp#DNA/PIF-Harbinger 298-1710 [Thalassiosira]
MSRSGSDPFNYQEYLDDEEELDALHQAKRRKEAIIYASAIATVAAASIPFGVLASAHQGRVPGAVTVKRQRLAVEDYCQT
LSDKHFRRRYRMGKESFWNLLHIVGDHLPSTGENRKNGCVPNGPISHAAHLSMALRIAAGADPLDVATNHGVNDNQPMVS
FWLVIDAIHKSPQLDIQFPTSHEEQEKVAKEFQSKSSIGISCCVGAIDGILIWIHKPSDSDCDMLGFGQTKFFCGRKKKF
GLNMQAVCDAQRRFLWVDIRYPGTTSDFFAFDQSSLKDKLEQPGFLHSGLCLFGDAAYANSPYMCSPFRSATGTQDDFNF
FQSQLRITIECAFGMLVHRFGILRKAFPVNVTVSKTNTAVLGLCKLHNFCIQSSNCGDDIVASDFRDASNIIMEGGLVLP
RIDRDDGSGNRWRYEEEDRLDNLLDGGQHMDDHSDVDRRRYRYRNELPRQSIHDYIVLNEFRRPDRRATR
>Harbinger-1_BF_p2#DNA/PIF-Harbinger 4077-2694 (rev) Genscan-predicted protein, 3 introns (3716:3572, 3386:3149, 2956:2695) No matches to other proteins so far. [Branchiostoma floridae]
MPKGRKAAGKDKGKQPRRPYTRRKKVLKTSEELDAETSGSELSEPGGGRGESNVDGSSDEPLSSSQQPSQKASITEDQDE
KIASFIESHQAFYDMSTPEYKNKQKKDAWLKDVAPEIGLTPKQILTRFQTMRTDYFKLKRKLAGKSGQGQTRVTPLQDFK
LRRYKFLDAHYRGRASSTELGSVKQPVFSVDEEEEEESSDGPRHDVSKASILPKNKKSKKGLGDVLVELLADSQKELKQS
QATLAESSSSASSSTRGGSERDAFAQWLARVQHDIPDDRWRSYQREVFDVALRYSTGTQPPQTRQHEPLDPPASP
>Harbinger-1_XT_p2#DNA/PIF-Harbinger 6873-1905 (rev) Via genewise with Harbinger-5_XT_p2, 1 frameshift and 2 introns (6388:3240, 3105:2339) [Xenopus (silurana) tropicalis]
MESTVADKKVAKKREHLQTTAVSPSSGSDTERPLYLGSPDVSEAEGTDREYHPEEASGESEELPPTSSGKRKRQQEGRLR
NLKFTEFENEALVEGLVPVYHKVIGKYATKTPTAxKTKAWKDIAERVNSVGVCLRNVQHCKKRYQDIKRVLKKKLAEDSR
YRSGTGGGPAKRVHFTRYEELLLPFLHRESVRGVSGTFDTDRNVGQVFFSFFPKGGRSSSVLHSPQCDPxIEGETFSGEA
SERGSHVGGSDVAFFSDEEPANIPQQQQLPTQARGTXAPQEPEKDRFHKSLIRHHKALMQKxDHMHVDLCVATNAYNAGQ
ARQAAHESAMLSLQQASEARKAQHEADMLSLHQASEARKAQHEAAMLSLQEEXVELKRQKLALLAEQNSLLKQQIAALQQ
QAQKPTEPTSSTSGAAGESTAPAPAGSTRQLRKRK
>Harbinger-1_PTrit_p2#DNA/PIF-Harbinger 1721-2641 R 1 intron, 1 frameshift [Puccinia triticina]
MADSPPPDNSTTDPTPKKKRGPNWLPREEEQLAISWINVSKQPSLPTXQSGETFFCKIKSDFNTHSKVHFRDHAQIKTXW
SAMNTATLKFSAIYNAIERNPPSGSSPDNWLQEAMKNYQAQNKNVAFNCLSAWQKLRFAPKWRSDQQPDQPSTPLHPNAL
PDPIKPDLSPSTGITPSARSATSIDRPIGGKAAKRRRIKGYKHNEAIAQANELTEIAQEHLGAFQKGNEILIAKNDIEKE
KLKIEEEKLVLEKEKVMIKKEFCWSETQMNDYKLLRESKDINDEDTKEVLMIMKQEIKSKWRSRA
>VHARB4_VV_p2#DNA/PIF-Harbinger 1950-2306 [Vitis vinifera]
MTTEITDVEDAGTWRGNIEKIFIDIMVNEVNKGNMDSGTFSTNTWRRILLEVNSQGKRNFNLKQLKQKFNRLRAMHREFS
DLLKHTGFGWDAETNTVHALEETWQNYIRVKITFKLITF
>PiggyBac-3_NV#DNA/PiggyBac 235-2250 [Nematostella vectensis]
MASVRVRRNRQRNLTVDEVLSSVFDENTTDLDSSDSEDGEDELPTLFPAIPADLEDDSVESVSSYEDSSSSSSDSEFDRR
QSVTNQRQEKARNLRECSQNARRTIRGVRRGRGARRGRAISVQQRREIQDGGRQQYIWSKEVNRRILKPFTNAVGLANRG
QRREKSALEYFELFFDQEVWDCLVTMTNLNAERKGAKGTSGGQWKPITQDEMKAFFGLNIAMGIVKLPEAKMYWQKKIWL
LTVPSFSQVMSRNRFFQILQYIHVSDDSNIVPSGQPGYDKLHKIKPLLNLLFPKFENAYNLHKNISIDECMIPWRGRLSF
RQFIANKPVRFGIKVWVLADSESKYVYRQQLYIGKNPGERAEVGLAARVVKELCSGLEGMGHHLYTDNYYTSVELYQFLF
DNQIYACGTIKGNRKNFAKEVLFENTRGLARGSSKWLMCGPLLAVGWLDNKAVYFLSTIHPPEFPVRAPVHARNVKRRGA
GEGGQSGDIPCPPLLKDYNAYMGGVDQSDQMLRYYTCIRKTVKWYRRVLFHEVEVAIHNAFVLECEDREGTPRPIRTSLE
FREELAENLIGNMRVAHNAAQRPPRNEELRLTDVGLHLPEMRQDKGNCAVCSKKIRKTHSDRYKDVPLARRPKVPYVPRP
SIYCNVCNVFLCLQKDQNCWKDFHTKVEYWR
>PiggyBac5_Api#DNA/PiggyBac 187899136 891-2447 R [Acyrthosiphon pisum]
ILQVENPSLSLNVTNLAWFNVTGDYQKQFVFNKNPGLKIDIPENASVWYHFNLFCSDDIIELIVIETNRNAEQFLSKIRL
SKASRFSKWVPTNYNEIKKFIGLLLWMGLVQMPSIESYWSTKSRYLNSIAGKTMPRNRFQLILRFWHFSDNLKAPVDDRI
YKVRGLIERLVKNYQSVMEPGEYMAIDESMVPFRGRLKFPQYIPGKAHKYGVKLFKICEVNGYTHDVNVYAGKNQVNGKG
LACRVVLELSNPFLNAGRTIVTDNFYTSLPLANELLEKNTHLIGTLRSNRIRLPEIFKTKLRPGEIIGRENINGILVAKW
HDKRDVSMMSTRHNINMVETGKKNRKNEPIFKLQIILDYNAGKAGIDLSDQLSSYSSPVRKSIRWYHKVATEVLLGTSVV
NALIVYNMNKPSDKTISITKFREMLVDELLELDQSQIVISDSPTTSTKRGRKTNHKFEESVERDYRNRKVRKRCLHCYSL
KTTAVGSKKASVETKKVTTYCSTCNIYTCIDCFNKNHI
>PiggyBac-4_SM#DNA/PiggyBac 1239-2825 [Schmidtea]
MSNEIADYELLADEGSDIGSDDEIEDFDIINDRAGERIWSKEGNFVPKLHQFQEKPGPKNFRVENEQPIDYFEWFIDSEF
MDYVVKETNLYQQQHPLPSQKKMAKWFDVTSNELSVFFAIVMLTGLVSKNELKDYWSVDPLLNTPIFPKTFTRNRFLQIM
RFLHFANNEQKTNDKLFKIGNVVNMVKEKFKNAIIPDRNICIDESLMLWKGRLSFKQYIPSKRHRFGIKLFEMVDCTTQC
ILNFIIYTGKSTKFRFHELLGISGSIVMELMNMHLDKGHVLYVDNWYSSPPLFEILHYKKTGACGTLRKNRKGLPKYSGK
MKKGELESYNTDKLLFQRWMDKREVFMLSTIHRNGLVESTKTNFQSFEKIMKPKTVIDYSLFMGGVDYSDMRMSFSECVR
KTTKWYKKFFFHIIDMVVHNAYCIYRAKNKSRIQLADFRLILVRQLIEKYGSQRSERVGRPPLSENPLRLQGRHFPDKIP
INSGDNGKKCCVVCSTSSDRKRTTIMCQLCDVPLCIVPCFKDYHTKVNL
>PiggyBac-9_SM#DNA/PiggyBac 746-2671 via tfasty with Pigibakku_tp, 2 stopcodons [Schmidtea]
MNVSHNNILSRSFSPGFVHAFVCTLSYSHYKCVSVVLEYNIYTSRVEGLLLHKHITIDMSSHPRAAKAFALRAILGESSS
SSSDNEVVLEADDVHEIKSNDEEQLSYDDTESEDADNLQVEINPADLHEQDDINRFTDSNGNVWVTPNEGMSGRVNAANI
LRPSPGITRWATQRIGENSVLDCFNLLFIKCKSIYYVHxIKVIIFFxLLATMETILIETNREGSKLYNNQFTALSLNELN
AFFGILILRGVYRAAGESIDELWSAEHGRFIFRNTMSLNRFKLIRRILRFDNPDTRKGRLLRDKLAAVRLLIDNFVENSQ
KCYMPGESVTIDEQLYPYRGRCKFVQYMPSKPSKYGLKFWAVCDSQNYYCWNLRFYMGKEDDRDMQVSYGEYITMDMLQG
LYGSGRNVTCDNFFTSLNLSKRLFQNGITMVGTIRASRRDIPKHLTRYQGREVFSTIELITTSTADRRDKALLVSYVAKK
NKVVNILSTAHNKITGYVGSKHKPDVLLFYNATKGGVDAMDERVATYTTKFKCRRWHVAFFCNILDISAFNAFALHYLVE
PQWNANKSHRRRLFLIELGNSLISAYVEDRRRTAAADSLSSTPCKRGDCYMCIDRKRCTVTCVKCNRFICKEHLHNICKN
CS
>PiggyBac-5_SM#DNA/PiggyBac 423-2237 [Schmidtea]
MDKRIFSKGKLSQKDLIDFWENFNGFESEDDDTIDDDDLEDPTYHSAVEEDSDDEETTPSATVPTELPCGSSADGIVSKP
SKSKDILWQKKNLKPNEEQLHFCGNSDLPGGLLQLQTPYQFFSYFVSEDLIAKIVKQTNLYSVQKHADRPMAFTTSDIKQ
YIGIVFYMSFVHMPNIRCYWSPELGYPPVNSTMSVNKFEKLRRYIHFNDNSTFVTREEPGFDRLHKIRPLIDHLKKKFNS
IPLENHLSIDEQMCSTKVKHFMKQYMPMKPHKWGFKLYILSGISGFAYNFEIYSGQENSMVRPDGEPDLGASSNIVLRLS
RIIPRKQNFRLYHDNFYSAIPLMVHLAKEGIFSLGTIRRNRVPNCKLPTEKIMKKDDRGKSYEFVANIDGVDISNLVWKD
NKYVTLVSSFAGTHPESVVRRYDRKMKKVIEVNCPYIIQEYNRHMGGVDLLDSHIGRYKIAIKSRKWYMRIFYHMMDLAM
VNAWLLYKRVLKQNGCLESSILDQPSFRAEVAHVLCKINTTSAKRGRPNALEKEIQLKKTKGPTQYIPPQDVRNDQFGHW
PIQIDIKMRCKYPNCKGFTRTKCEKCGVGLCLNKNNNCFKNFHTQ
>PiggyBac4_Api#DNA/PiggyBac 187897076 498-1511 R Fragment [Acyrthosiphon pisum]
NIFFIIISYTYILQVIINLFYFFRVNQWVDVDCEEMFVFLAITMLMARNKKLEIQDYWSMDPLSHQPIFGKYMSRNRYQI
ILRMLHFSQNEDQVPGDRLAKVRMPLKEITKNFKEAMIPFENLAIDESLVLWKGRLSFKQFIKTKRHRFGIKIFVLCDVE
TDFILDIIIYTGSTTEYKKTDPSLGISGAVVNTLIKPYLNRGHKLFIDNWYSSPSLANYLHKRKTNVTGTVRKNRKGMPT
LIAKLKVGQTESQHTKTMLVVKWKDRRDVFMLTTQFEDKMVHIGKNDHQGNAILKPVAVMHYNESMGPIDKTDMLLSSVE
CVRRTIKWYKKIIFSLD
>IS4EU-1_DR_tp#DNA/PIF-ISL2EU 108-441, 1034-2091 [Danio rerio]
MSSIACSVRGCHNNWIKRRNQLQQQCYEHRVTRSECCGAPYDLHPPPKDDEHLRQWLKALNLKQPPKRPYVCSYHFVDGK
PTDRHPYPEKWLGYEAPVKKPRRVLERLYDSDPSVAASNAVDSCEDEPVCMPLNCDAETQWEDLCVSEHSYTKSQLNLKP
PTRDMQTQCNESQPLYITLLRKNDLCQLYTGLTLDAFHSVAEHLTNAYSNSFQLHPWDQLLMTLMKLRLNLLQGDLAERF
AVSQSIVSKVISCWIDIMEENMRDYVPWLPKETIQATMPQCFREQFPNTTCIIDCSETPLQKPHNLDSRGESYSHYYGQN
TIKYLVSIAPCGLIMFISPAYGGRCSDKFITANSGFLEYLRPGDEVMADRGFTISDLLYEKKVKLVIPAFTKKGMQLSEE
DTTNTRRIANVRVHVERVICRLKTFKIISQTVPINLTPKIDKILRICAALCNLRSDIISDVEDE
>VHARB4_VV_tp#DNA/PIF-Harbinger 3175-4512 via genewise with HARB-3_STu_tp, 1 intron (3697:3807) [Vitis vinifera]
MDDNSTSSGSLYESTSSSEEDDDLDEIFIAHIMNEYEEIFLCKTPQRTSMLSGAQFVRDMIEGHPQTCYELFRMDKETFM
NLCDHLKRHENLQDTRLVTVEEAVAMFLLIVGHNVRMRVVADRFQHSTETVARHFKEVRRALCRLGKILICPNNMTNEVS
SYVASNPKYFPWFKVRVYKKIFINVNFMYINSFHDHYLIYFLNNNKCLLLxDCIGAIDGTHISAWVPADRQTSFRGRKTV
ITQNVMCACDFDMMFTFVYAGWEGTTNDARVFLDALTRPEVNFPWPSEGKYYVVDSGYPCISGFLPPYRGERYHLQEYRG
RRNQPIRYKELFNYRHSSLRNIIERCFGVLKTRFPILRMMPCYKPSRQPSIVVACCTLHNWIRLSTRNDQLFREYEVEDL
SIQGEEESTSSTNHSIDLSDESAAAMAACRDQIAQVMWANYINVNP
>46123137_GZ#DNA/PiggyBac gi|46123137|ref|XP_386122.1| hypothetical protein FG05946.1 [Gibberella zeae PH-1]
MSSQKIQDFIDDSSFNPPPSRAANDPTGVPIFPPEESCGRDFQPFHLQHRDFKIKALPQEPLELFQLFLPISLIQSWIEY
TNSWVAHLIENAVIDNWNTPLTEHSHILKWEGLSTSTAYIWLAIMIYLGIHRETTIRDHWKSPSLGDQRPLHSIIKFMPL
KKFKLITRYFHTFDHTKLDVTNEKDLPKTFQAAKEWSDHMQKVSLALYLPGTNLTVDKCIIPFIGRSKETTVIKNKPTPV
GFKVWAVAQQGYFLQWLWHVKASPYKAVIVELPSTKPYGKKGKLQTEISLNNNLFSSPHLFRHLRTLGIGATGTARPNCG
ITTTMKQIKETGKAPDGSTLKYNKVIQIAWKDSTIVLFLSTVHSRASHERTPKKRKMPAKRGTKAEQYRLQEYFNGESFK
IISIPTIAAQYNNEMNHVDRGDQIRSYTTYEHRFRRGPWQALLWSFLLEVALANSFILQRETTQPHWKPYITLKD
>piggyBac1_Mm#DNA/PiggyBac 764-2344 [Microcebus murinus]
GRKQEKEKWTSTSVNDKEPSRIPFSTGQLHVGPQVPSGCATPIDFFQLFFTETLIKNITDETNEYARHKISQKKLSQQST
RNNWKDVTIEEMKAFLGVILNMGVLNHPNLQSYWSMDFESHIPFFRSVFKRERFLQIFWMLHLKNDQKSSKDLRTRTEKV
NCFLSYLEMKFRERFCPGREIAVDEAVVGFKGKIHFITYNPKKPTKWGIRLYVLSDSKCGYVHSFVPYYGGITSETLVRP
DLPFTSRIVLELHERLKNSVPGSQGYHFFTDRYYTSVTLAKELFKEKTHLTGTIMPNRKDNPPVIKHQKLKKGEIVAFRD
ENVMLLAWKDKRIVTMLSTWDTSETESVERRVHGGGKEIVLKPKVVTNYTKFMGGVDIADHYTSTYCFMRKTLKWWRTLF
FWGLEVSVVNSYILYKECQKRKNEKPITHVKFIRKLVHDLVGEFRDGTLTSRGRLLSTNLEQRLDGKLHIITPHPNKKHK
DCVVCSNRKIKGGRRETIYICETCECKPGLHVGECFKKYHTMKNYRD
>PiggyBac1_CI_tp#DNA/PiggyBac 263-1981 [Ciona intestinalis]
MFSATAAAEILMDAGSDLSDLESDHDEDDNVGSFIVPNVADISDSDSESSDDSLPPPPPPANVWKSSITQQSLNSFLGEH
GPSSHACVSNDDSPLEYFRLIFTDELLTLVVEETNRYAAQYLQKTPLSSKSRAHNWKPVDAEELSLFLGLTLLTGIVHKR
GKLESYWSKNSMIETPFFGKCMSRNRYQAITGFLHFNDNEKLAENNDNDKLYKVRPVYDLIVARWKALYNLGEHISIDEG
MMKWRGRLGFRVYNKDKPIKYGIKSYILADSHSHYCWNLDMYHRVQKTLKETVSQILTSKCHFLWHSLYMDNFYNSVSMS
QMLLAFQIHSVGTLRSNRGEPREIRTPPNQMKKGDIIARQNQSVTVLAWKDKRVVKAISTKHDASVTTITRRQRRGGEKE
SVEKPVCIADYNLHMSGVDQVDQMISYYPCHRKSLKWTKKVFFYFMTISVHNAYILYKSKSSAKSCKTLYSFILTLVSQL
CQQDRLQPQIDDENLAGPPPKSPRIDSTKRLKGGFKKHVIALYLQLKKRQQRKDHVVRAWKTVAERTRYYCAYCNVPLCV
IPCFTKYHACAEF
>Tc1-6_Xt_tp#DNA/TcMar-Tc1 149-1189 [Xenopus (silurana) tropicalis]
MGKKGDLSNFERGMVVGARRAGLSISQSAQLLGFSRTTISRVYKEWCEKGKTSSMRQSCGRKCLVDARGQRRMGRLIQAD
RRATLTEITTRYNRGMQQSICEATTRTTLRRMGYNSRRPHRVPLISTTNRKKRLQFARAHQNWTVEDWKNVAWSDESRFL
LRHSNGRVRIWRKQNENMDPSCLVTTVQAGGGGVMVWGMFSWHTLGPLVPIGHRLNATAYLSIVSDHVHPFMTTMYPSSD
GYFQQDNAPCHKARIISNWFLEHDNEFTVLKWPPQSPDLNPIEHLWDVVERELRALDVHPTNLHQLQDAILSIWANISKE
CFQHLVESMPRRIKAVLKAKGGQTPY
>SMAR19#DNA/TcMar-Tc1 272-1291  [Schmidtea mediterranea]
MSINETKIVRDSEVVRLHKENLSDSEISKRLDIPRSTIYSIIKKYEKHDTVLRLSGSGRKKSLDDSDIQIILNEIEKNPF
TSSESIKNEIEKTTKKSVTSRTVRNYIKDTSYRSRVPRKVPKLSKSNIKRRLDLANEWSSWEESDWDKVIWSDETKINLF
SSDGRQRVYRKKGKALESKNCLPTIKHGGGSIMLWGCMSSKGVGRLHIIKGKMDGLMYKSILTKNLGPSARDMGLDDEFV
FQQDNDPKHTSRVVGEYFIFKNVNVLDWPAQSPDLNPIEHLWDYVKREVRKRKPTNLRELEQYVIEIWENIDSELCKRLV
KTMNDRVNCVIRAKGKHIPY
>Tc1_DM_tp#DNA/TcMar-Tc1 320-1354 [Drosophila fruit fly genus]
LNFFQTKTKNSLVMGRGKHCTVEKRNLIKNMISEGKTYAEIGRIVGCSNKMIRKALLFVEKNETRRRKPSMSNVEIKRLV
RQGKKEPFKPATELKKELQIAESVETVRKRLRQNNLNACSPRKVPLLTVKHVAKRIEYAKIHKDWPVEKWRNILWSDESK
IVLFGGKGSRSYVRRPPRTEYNPRFTFKAVKHGGSNIMVWACFSYYGVGPIHWIQGIMDQHIYTDILENVMLPYAEDEMP
LVWTFQQDNDPKHTSKKARKWFEQKSIRVMKWPAQSPDLNPIENLWADVKKKVSEAKPNNNEDLWGVVKDSWSKIPQKRC
QDLVDSMPRRCAAVIANKGHATKY
>Tc1_HC_tp#DNA/TcMar-Tc1 301-1313 wised with TCB2 [Haemonchus contortus]
MHSGICKSRQDQFDAVIRGFQEALTSRRVSEVQGVPVMCVQAIRKEYKVTRSAEAKIHPEAARLTLCLVDRKIVQRATNG
SRLTAAKIFREISPPERPNPFVNTVLRRLKEVGLFGRRPAKKPLISAKNRKVLLDWAHAHKNWVVQQWRKAIKSDKSKFS
LSSKDEIMFVXRPIGTRCHASYQLLTVKYGGGSVMVHGSFCGKGVCPLXSIEGKMDSKMCTNITKAVIYPFIRSIGRGHL
IFQQDNDPEHKSKLLTKXFRYNNVPLLPWPLQSPDLSPIEHLXDCLXRQVKNLXAQNKHEKLLQLKTIWENIPQEEIDKL
IKSMPRRCXAIIDAKGYATKH
>Tc1_FR5_tp#DNA/TcMar-Tc1 219-1221 wised with Tc3 [Takifugu]
MGQKRDXTGSEKSKIVRYLAEGCSTLKIAKLLKRDQRTIKRFIQNSQQGRKKRVEKPRRKITAHELRKVKRAAAKMPLAT
SFAIFQSCNITGVPKSTRCAILRDMAKVRKAEKxPPLNKTHKLKRQDWAKKYLKTDFSKVLWTDEMRVSLDGPDGWARGW
IGKGQTAPVRLRRQQGGGGVLVWAGIIKDELVGPFRVEDGVKLNSQSYCQFLEDTFFKQWYRKKSASFKKNMIFMQDNAP
SHASKCSTAWLAGKKXLKEEKLMTWPPCSPDLNPTENLWSLIKCEIYKEGKQYTSLNSVWEAVVAAARNVDREQIKTPTE
SMDGRLLSVLAKKG
>S2_DM_tp#DNA/TcMar-Tc1 394-1437 [Drosophila fruit fly genus]
NLEMPGKRLSFEVVQLIFYNHHLGKSVKELSEMFSASRRTIYNVINRAKNEGRLDSKCGAGRKNKISNRSDRLIMRKIYE
NPQISLRTVAKELKEECDLDVSHETVRQAILRHKYHSRVARKKPMLSAINIEKRLTFAIKMQHQPEDYWNNVIFCDETKM
MLYYNDGPNRVWRKALTALENRNIIPTVKFGKLSVMIWGCISSRGVGDLAFIENTMNAEQFLNILKCNLTSSAKKFGFYK
NNRPDFKFYQDNDPKHKALNVRNWLVYDCGKVIDTHPQNPDLNPIENLWVHLKKKVAKRSPNNRAALKAAILEEWHKIPQ
QYDLEKLFFQXKKRLQYVINAKGMHTKY
>Mariner-13_DAn_tp#DNA/TcMar-Tc1 365-1367 via tfasty with Mariner-3_DBp, 1 frameshift. [Drosophila ananassae]
MPRAPELSEKEKTQIETMAKCGVKVGEIAKRINRHRNTIGNFLENPEKYAQSNRKGAVSKIDARTKRHIRALATAKTMSC
AQIKAEFQLPISRQRVQQICKKDLNLQYDAKVHKPRHYKLLPRHKKARLAFYEKYKFWTNEFEKVIFSDEKKFNLDGPDG
NQKYWRDPRHPRQTCHKRNHGGGSLMVWAAFSAKGKSPICFVTGRINAQMYTDLLESELLPFAEELHGEDWVFQQDNAPL
HVARYTMSFLESKNIPLLQWPAISPDLNPIENLWGILSAKVYKSGRQFESLKGLKEAIVKEWDAIDTNTLQNLVNSMPQR
LELVLQENGGSIPY
>Mariner-5_DY_tp#DNA/TcMar-Tc1 389-1381  [Drosophila yakuba]
MPRGTHLSVEERGLIMGLSESGAKISEIASRVSRHPNTVANFLKNVESYGKAERSGRPSTIDERCKREIKRLAVNKQMSC
NDIKRHLKLKVSRRRVHQLLAENKTVKYSSRVPVPMLLPRHISTRLSFAEKYKFWSEEFRSVIFSDEKKWNLDGPDGCHK
YWRDLRHPRETRHKRNFGGGSLMVWAAFGYAGKSRVCFIPTKTNSEIYTQLLEEELIDFATELYADNWTFQQDNAPIHTS
RATKTFFSSKSIPLLEWPAISPDLNPIEDLWGILSARIYKNGRQFDNIRQLKDVLVAEWELISNETLQNLADSMPNRIHK
LLMAKGKHINY
>Mariner-16_DF_tp#DNA/TcMar-Tc1 209-1307 via genewise with Tc1_Ele13, 1 intron (973:1043) [Drosophila ficusphila]
MPKQKQFTDRDKEKIILLAEQNESNRQIAAETHFNESSVRRFLKKYRQTGELKRKKGTGEKKCTTSREDRFIMRTSLQNR
FKTAVQIRSEVHEQFSKDISERTVQRRLNSMGMLARXSAKKPLLNPRMKKNRLNWAKDKENWTASDWSRVLFSDESKFNL
IGSDGILKVRRRRGERYSENCCIATVKHSPYVMVWGCISKYKTESILMVQGMVNAEKYKEIILRGVVPSIESISEEEDEP
IFQDDSAPCHRARSITNLKEELGIKSLDWPGNSPDLNPIENVWAYMGAKIRKRKPKTMEELTHIIEKVWIHDITKEYLCS
IYDSMPNRVKSVIKAKGGISKYKTESILMVQGMVNAEKYKEIILRGVVPSIESISEEEDEPIFQDDSAPCHRARSVSYSV
SDYYQNNFFS
>PrD37E_tp#DNA/TcMar-Tc1 326-1207 [Philodina roseola]
MKDLPRSGRPFKLSKKKIDCLVESVNNRCGVSQRKLARRFGVHQSTICRNLRRRTSVVIRKRKKAPKMNSTEQETRAQEN
CGKLCRMLVNGCDIIMDDEKYFKLSGDNVLGNRYFYSNDPSTAPPDVKFQKKAKFERKVMVWIAISSRGISSVYVHKSKQ
AVRQETYLAECIDKRLLPFIEKHHSDGKYLFWPDLATSHYSNIVQQRLRDNHIPYVLRIDNPPNVPQARPIEQVWSLLEQ
KIYENNWEAKDIDCLARRIKQKVKEFDQDMLRRMICSVRKKLLSMWKKGLYSVI
>MARISP1_tp#DNA/TcMar-Tc1 321-1343 [Strongylocentrotus purpuratus]
MPRPTPMAIRRRVLTFHQEGHTQVDIVGVLGISQSTVSKILKLHREEGDLRPRQSPGRPRLTNARDDRRLLNLCRQNRKI
PSSRLRRLWRGYYGIHVSRQTVNRRLLQHGYRARRMTKCPRLTVRHRVARLQWAREHRRLQLGHWRHVIFMDESRYVLER
TDGRQRVRRLTGENLRDDCVRETTQGGGGSVMVWARIHYNGKTPLVVPNGYVNAVVYRDILENYCLSHARMVYGDNFRLQ
DDNARPHRAAAVREFLDAEGVQQLPWPAYSPDMNPIEHAWDALGRAINDRDNIPRTLQDLAHALTEEWDALAIDSINKLV
DSMPRRLNALIRVRGGHTRY
>TDR1_tp#DNA/TcMar-Tc1 317-1036 [Danio]
RKSSNTLLPCVTTWENQQARINXKARLQLAXLHWEKTNVWRHVLXSDGXKIELFGHNDQCYIWRTKGKAXKPXNTIPTVX
YGGGSIMLWGCFAAGGTGPLHSIDGIMKKEHYXEILKQHLKTSARKLKLGHKWVFQTDHDPKHTAKLVKMCFKDNRVNVL
EWPSQSPDLNPIENXWAELKKLVRARQPTNLTQLHQFCQEEWAKIPANYCEKLVEGYPKHLTKVIQFKSKAKKIPRKCM
>Tigger4_tp#DNA/TcMar-Tigger 409-2070 [Primates]
MSKRPADTPMGNSDKKKRKHLCLSIAQKVKLLEKLDSGVSVKRLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQKLMKN
RKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHDELKIEGNCEYSTGWLQKFKKRHGIKFLKICGDKASA
DHEAAEKFIDEFAKVIADENLTPEQVYNADETSLFWRYCPRKTLTTADETAPTGIKDAKDRITVLGCANAAGTHKCKLAV
IGKSLRPRCFQGVNFLPVHYYANKKAWITRDIFSDWFHKHFVPAARAHCREAGLDDDCKILLFLDNCSAHPPAEILIKNN
VYAMYFPPNVTSLIQPCDQGILRSMKSKYKNTFLNSMLAAVNRGVGVEGFQKEFSMKDAIYAVANAWNTVTKDTVVHAWH
NLWPATMFSDDDEQGGDFEGFRMSSEKKMMSDLLTYAKNIPSESVSKLEEVDIEEVFNIDNEAPVVHSLTDGEIAEMVLN
QGDRDNSDDEDDVVNTAEKVPIDDMVKMCDGLIEGLEQRAFITEQEIMSVYKIKERLLRQKPLLMRQMTLEETF
>SMAR11#DNA/TcMar-Tigger 541-2239 via tfasty with Tigger1_tp, 2 frameshifts and 1 stopcodon.  [Schmidtea mediterranea]
MEKAGKRKILTLEAKLEIVKQLENGEKMSVLAKRHNMNESSIRRIKLNAEENxKFSSLFYIASCKNTTMIRKRDNIIAEM
EKVLMLWIEDQTSNNMPLSQALIQSKALTLFNSMKAEQKEEPGSSNLDEIKFEASRGWFVKFKERQNLHNIKFTGEAASS
DIEAAYLYPKKLKHIIEGCGYLPSQVFNVDETGLFWKRMPSRTFISKEEKSAPGFKVSKDRLTVLFCGNAAGDCKNKPLI
IYKSENPRAFKGISKNSLPVHWVSNKKAWMTAKLFENWFLNCFCVQAETYCKDKNIAFKILLIVDNAPSHPPHLAELHPN
VKVIFLPPNTTSLIQPMDQGIIAAFKLYYLRRTFRQLIEATDGPDNLSIREYWRQYNILSSVKNIKLAWDEVKNSTMNAV
WKKLWPESCIREAVVEMPEIVEIVTLGRTIGGDGFQNLESEDITEVLVSNEENNTVDDILTQFGGNNDENDESEEDVQIT
EEKKFTTEKLSSFLKLGSQLEQQALNMDPDMERALKFRRNLTAALAPYAEIYKEKQKAGKQSVLTSFFPKNIQSQPIESS
SSACISD
>2429545_Cel_pol#LINE/CR1 gi|2429545|gb|AAB71070.1|  Hypothetical protein ZK250.1 [Caenorhabditis elegans]
MLANARSIASLEKLEFVHKFVASNSLDFLFVTETFLSNAFTDFSCSSPHYTCIRSDRLECHPKKCGGGTAVTAELFKNLN
QLLDCPSYTYVLLGDFNFANTKWNSNFLPTGSEYLYNWMKFHDLAQMVNFPTRFSKLNSGTFLDLIFTNNSGVLQNLKPG
TPFINSDHISIFFSLSLPQTTPAHSAPPKSFMNFRKCDFFNLNRYMVSYNWPKQLSFFATPDSKLNHFLKIFNELISDFT
PQYPTLRVQSPKVTGRKLYRKLRKHHPDTESSVSKKRVKSRLKFLKKKNMAFENKLIHSKNSKSLFSYIRNRIKPSSSLT
HFSVDNNNVDKPIEMAEVLVKEFSKSFVTHDPPFPTFPSCESTPSPVDTSPLTIASTILKLKPKIGYSLDNINFFILKKC
CDSISIPLSLIFKEFITTNSFPSCWKTSIVIPVHKKGNSSDPKNYRPIALTHPLSRLFEIIVLNPIRKTFSHKISKFQFG
FLNNRSCITAHLNASSNYHKILSVPNQFVDIILFDFAKAFDSVPHELLLCKLRNFGFDDNICLTLLVSYKALSLDPFFLV
YINDLLDLFPPDVHVIAFADDLKLFSNNCQSLRSSIKIIENWCKIWQLKLAENKTKVLHVGKKNPKYKYYVNGQKIECCS
KACDLGIWVDDQLTYEKHILVKVNAAMFKCRQILKNFRSLNMMFYFKLFNTYQPFARAKARAPSGFVVSRFLKHIFSLVF
EFYNLRLKTALKQMSCFGLSVRI
>CR1-1_DK_pol#LINE/CR1 1612-4445  [Drosophila kikkawai]
LIDSFVLHYQNVRSLLGKLSRLHVNSVSFDANVIVFTETWLNSSVSDSEIFSGNYAIFRRDRPIRTGGGVLIAVKSDLVS
NIISKTDTDIEFVAVRIQVYDYSIYVSCSYIPPRSDTDIYMQHLSLIQEIHSSLGINDHLIVTGDFNLPSISWMPLPDSN
VLVPTSPHDLIHGLIDHSLGQLNFVRNCSNNVLDLIFVSEFANAYVTRIDPLSSPEDAYHPTLELTLEASTPLLLCPEAE
PATFRCFRKAKFTEMNHHLSLTDWTFLNSTEDPSDIVKRFYEIMYSVFDMYVPSFPSPEVSHKPPWFSRRLSYLKNLKSR
LFKKYSKSGLQVDHSRYLTARTNFLAHNSECYRNHLNRCKIEFQANPKQFYAFVNSKRKSQQFPSCLHFDNASASNEPDI
ANLFAKFFQTTYSQTNFDNNSEYSFPLPHSNCIFMPVISEDDVLHNLRTIKLSFSSGPDLVPSCVLRNCASSLCRPLSRL
FQLSLQHSFFPKVWKESFIIPLHKKGSKSNIEHYRGIAKLSAIPKLFEFLITTQLQHQCSSIMSPSQHGFMKRKSTSTNL
LEFVAVIRNAFKNNTQTDVIFTDFSKAFDSVNHQLLLKKLCLLGFPVTLIKWISTYLSNRTQRVAFKGSFSNLVHVTSGV
PQGSHLGPLLFGIFINDLPQVILHSYVLMYADDVKLCLPLVNPDSAQLLQADLNNMLSWCTHNLLFLNNSKCKYMSFYRR
NCFQANYSLGTSVLERIHSVTDLGVLFTHNLSFTDHIGIIVGKAKGVFAFVKRWSKEFDDPYTTKLLYISLVRPILEYCS
CVWSPQYAKYQDLIESVQKQFLLFALRGLDWDPHRHLPPYADRLRLLDLPSLKDRRTCHGVMFLHKLINGYIFSSNLLKQ
IRFSVPSRPSRYFRPIALDICKTNFEAHDPFRVLCSLYNDMYSLLYFEMSLDFNKNNILRHLSLPLTT
>AGAM2_pol#LINE/CR1 3-1751 (fraction) [Anopheles genus]
NFIRLAELLQSTDWSFLEGNPDVNSALELFNTTLLALISDCCPLMPPRRSPPWSDARLRRLKQNKASCFRFYSTNGTQHS
KLRFIAAHNVYRSYNRQLHTRYLIRVKFSLIRHPTRFWRYVESKRGNSSLPDVLTYNNVSTSSKEGMCNLFADRFKDCFT
TDDASLSLEAALNNVPRDVVDIDVRDIIISVDTVLRALQQVKTSYNPGPDGIPTAILAKCREFLAEPLSQIYQLSFAQST
VPTAWKSSVMFPVYKKGDKNSAENYRGITTLPSCAKVFEIVIQNSLMYHCRSYISTRQHGFFPRRSVTTNLVEFVSNCHA
AFTSGAQMDAVYTDLKAAFDRVNHRLLLAKLARIGLSTPLVNWFRSYISERSYYVQIDGVSSNVFESSSGVPQGSNLGPL
LFSLFINDVTLAITEADCLLYADDVRLFRIVRNTSDSLSLQRSIDVFSDWCINNDLLISVDKCTSMSFFRIASPIRYIYS
ISGTQLPRCNTVRDLGVTLDRKLDFRQHYCDILDKANKMLGFIRRHSRELNDPHCLLTLYKSYVRSILEFSSTVWCPFSS
VWSNRIEAVQKRVTRIVLHFTP
>Mariner-5_AMi_tp#DNA/TcMar-Tigger 535-2073[Crocodylia]
MLGVWVEDQTQRKMNLSSAAIRGKALQIYGCLLQEDGGPEEPFMASKGWFDKFLRRMNLHSVKMTGESASADHEAAAKFP
EGLQAIIAAEGYSPKQVFNADETGLFWKRMPSRTYISKEEKVASGFKAAKDRLTVLLCGNAAGDFKCKPLIVYHSLNPRA
LKGLSRNMLPVHWAANKKAWVTGQVFEDWFAQHFIVEAERYCREANLAFKVLLILDNAPGHPKHLETINPNVRIVFLPPN
TTSLIQPLDQGVISTFKAYYLRRSISQLLEDTDGPNKPTIREWWKAYNVRDAIDNIKASWDEVKSTTINSAWKPLWKECV
MDSKGSPKLCTTVQEVIDLGRKVGGDGFSDLEEADVMELIDSHNEELSVDELIEIAAADEEEEEQEQEVVLEVKDMTMKK
LAEFFAQAERLAQFALDMDPSLDRSLQFKHGLNSLLGPYKEVYAQTQRLARQCTMFQFLKPHSATPSPTPLVLEGDESPV
PVDSPMDVTLPVPPTSDVESDTEDPSPPSLHTN
>Tc2_FR5_tp#DNA/TcMar-Tc2 208-1557 [Takifugu]
HKQTLIMENARRNAYDAAFKLKAIELADKEGNRAAARKLNINESMVRRWKRQREELEQCKKTKKAFRGNKSRWPELENIL
EDWVSTQRADGRGVSTVQIRLKAKTIATEKKIQDFKGGPSWCLRFMKRKGLSIRTRTTLCQQLHPEYEEQVANFQKFIQT
KRAENSIGPDNIINMDEVPLTFDLPLTRTVNKKGEASVTLKTSGHERTHFTCVLGCTASGMKLPPMVIFKRITMPKEKLP
KDXVVKVXTKGWMVESVMKEWLTECYGKRPGGFFHRKKALVVLDSMRAHITDSVKAAIKGTNSIPAVIPGGTTKYLQPLD
ISVNRAFKVALQVEWEAWMTSGEKSFTKTGRMRRATFAQVCQWILTAWSGVKKSTITNGFRKAGLLRDGEDSTSSGVNLP
QDESDTDSDNERETERVCGEEFLTLFQSDTEEEDFHGFSTQEEDEDSSR
>Mariner-4_XT#DNA/TcMar-Tc2 1030-2328 [Xenopus (Silurana) tropicalis]
MSTKRKSYSVEYKRRIVEDSWGQNLHTFCKKKKMLNMRLVRKWRAEYGKLIEQVEKGNAKQRKYGSGRQPIFSELEDLIC
EWVVDRRAKALVVNRAQIQEFALAMAPHFDIAHEDFKASQHWLDNFLQRSELSLRRSTTLFRLEDAQVIKRALAFKSFID
DIKLSKYNLSNMIAMDETAVFKRQSSQTTIEQRGASSVYIPSTAYESACVTCILAIRLDGTKIPPLIISKGKKEKIERVL
GIFVLETEKAWATQAVIRKWVDLMLPLVMRGGQRGLLVSDAASTHRAKDMKSFLHERKIDQVMIPAGMTAYLQTLDIAIN
KPFKDNLRMEINDYIENRMERNQRGNFVKPKLQEIVTWVKNSWEKITDRCIEHALRAGYLDKKYSFKDSAIAKRERFGPL
ILKEMESQVTDLELQGVDCYDEVPEDDDLIVTE
>Tc5_tp#DNA/TcMar-Tc4 gi|17541654|ref|NP_501429.1| tc5 transposase and CENP-B protein and Tc5 transposase, C-terminal family member (mut-x) [Caenorhabditis elegans]
MPFRPQVIIGELMKTFGTNTNALPMSREETKTVEKFTRILKDAETDDLLIQSDDEEEVFGGIVDEEDWKPDDDDPSACVV
PDKVNFSSGAAIDVAMVHSAVEFMTDVRTKKLRSFASMQRRYRFIKTQHDMQKLRVFAKNNEIQCSRVSQFSTLSGLLRT
KVFEAIDDRISIDKFTLRRLAVQLNDEHVHIEGFQASDGWLKKWKKTNGLVSRHVTTFITRANYVNKELTEQAAKKFVEE
VKAELATLDPDVVYNCDQSGFTKEQYCKRTLAPKGVKRVERLVQSKDALTHSYTILPMLSASGKLAPKLYVVLQEKGGKF
PKKGHFSPDNLIIRANTSHIMNKQLMVDWVESAVCDPSMPTEVVLLLDAWPAWKNEGDVQAAALSGNTVHVRSIPPGATS
FIQPCDLYFFCPLKNFVKKVNAYIIYSGITFKTSERDNLLRVISAVYRVFRAPIFQSCWKYGWIQGGYIDDQHVKVETPS
KFCFKVSGYCSQKKTRDTMCQDTAFLLCPYCKKVLCFNHWVGCGFPAHKSPNFKTSQLGQTCSEAAKFFEGIICNYPLSN
VYSGVTKSDNEFRTFPCQIIDARMLLSPPTDCRFFCFLCKFALCCSVFQIPLSHLGSMEEDGFDARALLSTPTDSSDFSL
FPNDLQLFLAPRTNSTKGSCSSHLTIF
>Mariner-4_Crp_tp#DNA/TcMar-Tigger 271-2061[Crocodylidae]
MASNMLFIASKSKGEKRKRVVLTLTQKIDICRCLEKGENRNVLMKEFNVGSSTIYDIKAQKEQLLKFVSSSETSKAVEKR
RTLHKPKLEQLDSVLYEWFSLKRSEGAPISGPMLTEKVKDFYKQMDLTEPCAFLAGWLSRFKLCHGIRRLDVSGEIKSAD
HEAAEKYCGFFNKLVAEHDLSPDQIYNADETGLFWRCLPNSTLAGAGESSAAGFKQNKDRITVLTCANAGGTHKVKLLVV
GKFNRPRAFKGITHLPVVYKAQSNAWMDKGIFYDWFHHVFVPSVKEHFRKIGKPEDSKAILLLDSCQAHPPECELVSGNI
FTIFLPADVTSLIQPMDQGIIQNMKCYYRRDFLRKLINHEGTIQNFQSLYNIKDAVFNVACAWNSVKSKTLRRAWRKLWP
SVMFAEGSSDEEDFEGFNVRHRKNTIAQILEVVKDAPXTNPVNKLKESEIEEWVEADKEVEHVFSDAEIIESVVNPEKSE
VTEKDSEEEDFGEEEKISWASAASYIDNFIKFAERQSCYSAQEVMQLHIIHSNFMQKRQAASRQADIRDXXKKASRACHK
ASTESAPSPSPSTSTIDVDDFEALQDPQVPIESPKRQ
>Mariner-2_ACar#DNA/TcMar-Tigger 1291-2886  [Anolis carolinensis]
MHVLMATKRKKIVVSMEQKLEAIKRLDKGEPMQKVADDYGVGRVTVGDWKRNRLEIEKWCSSRVTDGALKERKTMKKCDY
EKVSEALYVWFTQFRDKGVPISGPILQQKALYFQKEFNEGEPDFTASVGWLNRWKKRYGIRQLSVCGEKLSSNYQEMEAF
KKKFQDFVKTENLTGDQIFNCDETGLNYKMLPSRSLAAETEAAAPGYKRSKERLTILACSNATANHKMDLAMIGKSKNPR
AFKTISKNALPVKYYNQKSAWMTSEIFKDWFFKEFVPSTEKFLKEKDLPRKAVLLLDNAPTHPDAEELQDGDIKAMFLPP
NVTAICQPMDQGVLETLKRNYRRKLLSTIIEEIEEGQDMIEKLKYINVKEVAYWVARAWTDVRAPTIARSWKKLLGEDKD
ENMERESTDETEESILPLVQRVPGCENVSSQEVESWMNEDDQYEITDEEIVAFLNNDGDEIDDQASTVEPLKISHKEGVR
ILESAMTYIEQQDEATGIDIMMLQRWRDSAAKKRHSSEKQAKITDFFKSSQD
>Sagan-4_TMe#DNA/TcMar-Sagan 1031-2788 via genscan, 2 introns (511:586, 962:1019) [Tuber melanosporum]
MTRVKKRIQQSRAAGRLGGQPRSTVNREQVEAVHSSVQGDINCEEVEEQNGVKEFQMRAGRGGKVPCRQTIWRRMKKEQK
QREGVSENLESVLGKELEDEQVGREASSHEEEQDEVEGDEQQVVDEREEVNEEVENDQDELDKRRESLDLAEAMGSWPVL
SKYQATRFQYKILTNGIHDMRRLLRSKCRAPIGQDLEHHLQVLEFLRFQRYGLQKTFWKRTRKDAASFIAAANGHGNRVR
NRIIQNERSWIKSRHISSTYQGKSPMLHRLIDDEGTKLALREYLAGAGEAITGQSVAYAISAYWQTGILPFEEQPGLKKP
PQPYSSEAKAQLALLAESRREVQDTLSCQTAVQWLHEMGYKFRDVRKGVYKDGHERADVVQYRQEQFLPALQALQERMVR
WELISSDGDEEIRIIYPSNLPTGVKPIVIIVHDETTFNANDGRSKIWIKEDNIPLKKKTRGKGIMVSDFLTPGGRLRVPE
GVDNLTVTEYGMLEEGPKCLDPQLTTCSIEYGGNIWWDGDQLIEQVMKLAIPVFESAFPGCQALFLFDNATSHSAYSHDA
LRACMMNLRPGGGQACLRPGINSLTGDIQPMIMADGTPKGLQIVLQERGLWRPKLRVQCQKPDGKKNKLCLNGGTCCARA
LIAQEPDFKAQKSRLEEEVEEKGHLVYFFPKFHCELNFIEYYWGAAKRYARRRCGYNIRALRKMVPECLNSVKPTLIWKY
WARTERMMRAYRAGYAYGTTDFKEMVTKIYRSHRRVSNSQTIVYN
>Sagan-2_TMe#DNA/TcMar-Sagan 750-2879 via genewise with Sagan-4_TMe, 1 intron (1048:1137), 1 stopcodon (still partial) [Tuber melanosporum]
KTPSRQTLWRRRKQLEIATALNSREEVDFIQEGMLPMFDINKLExEESIIVLTLILAEEGEHGFQSELQLQSYIKDAIEV
WPRVANIQKEKVKYQILSSAIKDLRKYLKSKKCSLKGKDLESHHQVLQFMRFQRMGLFKPIWNKPRKEIALLVAATSERG
RRVAERIQRDERKWIKSRGIILQKRREQASIISRMDEEETQLAIREYIAGAGDSVTAAGLAHAITQYWSTGRLPPPDIDG
QGHLLSPPHVPLEQVALQRGIQNILSTRIASKWLNKLGYKYKECKKGVYKDGHERPDVISYRQDHFLPTLDRLKPLMVQW
ELDQNGKPVMIYPQDLPPGQSPIVLITHDESTFDANDGRRYVWMKEGEPPIRRKGRGKGIMVSHFVSQGGHLKAPDWIPI
GDLPTFGMTDEPNLRYSPYTATMKIEYGGDKWWVGEDLVLQVTNVAIPIFETAFPGCQALFLFDNATSHSAFAPDALRAK
NMSLRPGGGQSKLRPGFNSAIGEIQPMVDSSGTAKGLKKVLEERGLWRRGLRLQCRKPGTDKLLKTCLLGGECCARAIIA
NQPDFKSQKCRLQEEIEAAGHHVLFYPKFHCEINFIEYVWGAAKRYTRNNCRYSIKSLRPTIPKALDSVSDQLIWKYGKR
AERIMDSYRQGISYGTPQFEASIKHKYKSHRRVSDIQVLE
>Sagan-10_TMe#DNA/TcMar-Sagan 465-2463 via genscan, 1 intron (1078:1144) [Tuber melanosporum]
MRKLRQRRAIDHAPAAVAPCPIVPDPLVSELDSPSANVELESEFSAQLKLDYQAWPRRRMFHNQACPRRLKILQDSYQAI
LKKVSQRYSKSKNRPSGLSFLWHYQVCLFLKLQVKQEQAVLKGPDLFTGVLPQLRSRKKLAKRVADGGGWGRRIVERIMR
HEVLWVTKRQIPEPRQGRHQKVISLLDDAETMLAVREYILKAGDKITSRRLANAIVIHWRTLEPSDDEDISNRSMENVVR
DVEKAINSTTAARWMRKLGFKYKEYRKGIYNDGHERQDVKDYRNNVFLPRMALLKEQFLHWDENLNEIPNPLHLSEEVQP
LILVTQDECTFNSNDGKHYIWIHPEHKPLRKKGRGQGLHVSDFLTPIGRLGEGNACVIMECGGDEWWNGDKLLNQIVEKA
IPAFEAQFPGCKALFAFDNARLHLKYANDALRVSEMNLEPGGKNAKVMHNTYVVDPSHPNGGFLQSMVLPNGIPKGLKLV
LTERGLWPRNQLRFRTQCSILSSTGKSRILNSRCLQGGSCCARALLAAQPDFQSQKSQVEQVILDAGHEVIFYPAFHCEL
NFIEYFWGEAKRYTRENCEYDFKSLKRLVPEALAGVSGQLIWKYWARTERIMEAYRSNTIYGSKEYEALVHRKYASHRRV
SGNL
>51467743_DR#DNA/TcMar-Tc1 gi|51467743|ref|NP_001003821.1| si:busm1-105l16.15 Almost identical to Tc1_FR5 [Danio rerio]
MGQKKDLTGSEKQKIVRYLAEGCSTLKIAKLLNRNHRTIKCFIQNSQQGRKKCVEKPRRKITAHKLRKVKRAAAKMPLAT
SLATFQSCNITGVPKSTRCAILRDMAKVRKAERRPPLNKTHKLKRQDWVEKYLKTDFSKVLWTDDMRVSLHGPDGWARGW
IDKGQRAPVRLRHQQDGGGVLVWAGIIKDGLVGPFRVEDGVKLNSQSYCQFLEDTFFKQWYRKKSASFKKNMIFMQDNAP
SHMSKYSISWLPRKGIKEEKLMTWPPCSSDLIPIENLWSIIKCEIYKEGKQYTSLNSVWEAVVTAARNVDGEQIRTLTES
MDGRLLSVLAKKGGYIGH
>Mariner_MT_tp#DNA/TcMar-Stowaway 1047-2537 [Medicago truncatula]
MYKRVDAVFFGRLKRDIQNFVANCDHNVLILKHCFFLTVLYFFFLYLITIRTSFFNHAEAIIVEEIQQSNNKRSFLDNNQ
RKLVSHLLLNSSYNGKLCRGIVRTLASYFSVSQDVIYRIWRQVKKTGDPCHKKSKNCGRKRIQIDFDKMRNASLAKRSTL
RSLQTVLGLKTKTTLLKYIKEGVLRRHSNVLKPYLNDNNLKARIEFCLDMLEESSIPHDPVFKPMYNVVHIDEKWFYITK
KSSNYYLLADEDEPHRMCRNKNYIGKVMFLVVVARPRFDDDGNETFSGKIGCFPIVHKVPAQRSSINRPAGTLETKPITS
INREVTRKMYIDEVLPAIKEKWPREYAHETIYIQQDNAPCHVPLDDEEFCRAACDGGFDIRLTFQPPNSPDLNVLDLGFF
SAIQSLQQQEVTNSVDALIEAVQKSFDAFSAQSSNNIFLTLQSCMIEIMKVKGSNNYKIPHMEKEMLLRRGMLPTQLKCD
PELFQETFEYLYNVEEM
>Mariner-7_AF_tp#DNA/TcMar-Pogo 181-1734 [Aspergillus fumigatus]
MPQRKSISTSQKVALRARKRLYPKATQKELREWFKDTYDHTLSSGLISDILSRKYDYLDADSLPSRDAKRQRRENWPELE
NALFKWIIRVEGQISISAEIIQQKAQFFWEKIYPGQEMPTFSNGWLHNFQARRSVRWHRQHGEEGSVSAQADQEMLEIKQ
VLSAYSLKDQFNCDETGLFWKKTPARSLSTRQLPGRKKDKARITALFCCNVDGSEKLLLWFIGTAKNPRAFQAAGVNIRN
LNLIWRSNQKAWITTPIFTEFLRWFNRQMSGRNVVLLMDNFSAHQAAVAEIQSSGYLLQNTLIIWLPANSTSRYQPLDQG
IIFCWKSYWKRYWIHFILQEFELNHDLIALMNILRAIRWGIQSWEFDLSGQVIQNCFRKALYSQLLYQEPVDPAVLDDIE
KAFSLLKVSTPIQDLMDINTFLNPAEEAIQDTPEDIKSQILAQYGPELDDDSEGELEILLQISLDEALEALRKLCLYEEQ
QAEGIPSLIYKLDKHECILLGRKLSLQTQRDIRSYFTG
>Mariner_Tbel_tp#DNA/TcMar-Mariner 84-1205  [Tupaia belangeri]
MLLLCHLTADSSSFILKKLSDLVEFWRFYKLKMEDQTLHFRHILLFYFRKGKNARQACEKLRKVYGDNALQERQCQRWFT
KFRAGDFDLNDAPRSGRPTEVDDDKIKALIESNPRYTTREIAETLNIHHSSVHDHLKKLGYVRKLDIWVPHELKEVHLTA
HINICDMLIKREENDPFLKRLITGDEKWIVYNNVVRKRSWSQRDDSPQTTSKADIHQRKVMLSVWWDFKGVVFFELLPRN
QTINSNVYCRQLDSLNESIIQKRPELVDRKGVVFHHDNARPHTSLITRQKLLELGWDVLPHPPYSPDLAPSDFHLFRSLQ
NSLRGITFNSDEAVNQHLVQFFADKDRSFYERGIMKLTERWQKVIEQNGQYIID
>Mariner-2_BF#DNA/TcMar-Mariner 169-1221 [Branchiostoma floridae]
MEPVECRAVIRFLYLKGRTPKETFDEMKETYGDDAPSYGLVKRWHREFKHGRKSVETAPRPGRPCSAMIDESSVRQVEAA
ILEDRRITVRQIAQEVKISTGSVETIIHKHLHMQKVSARWIPRLLTPFQKQERVECSRMNLEMCQEDESNFFKRLITQDE
TWVHHYDPETKAQSKQWKHSDSPPPKKARVQPSAGKVMLTVFWDQDGVVMTDFLAKGTTITGAYYASLLTKLREAIKIKR
RGKISKGILLLQDNAPVHNSHVARSEARACGYEILPHPPYSPDLAPSDFHLFPAMKLFLKGKRFQDDAALISEVTTWLED
QPRVFYKNGVQSCIKRWEKCITLGGSYVEKD
>SMAR26#DNA/TcMar-Mariner 85-1115 via tfasty with MARIAM1_tp, 3 frameshifts.  [Schmidtea mediterranea]
MSVDKVHLQHCILYEFEQKNNASIACENICAVFGRGVVNVRTCQRWFRKFRSGDLSLEEDTRPGRPSKIDNEVLRSMLEH
NPHLTTRQIGERLRISHTVAGDHIKALGFVLKQAVWIPHDLTEKNLSDRIRICSSHLIRNNMEPFLDKLITGDEKWILYE
NIKKRKVYCKPGTSPATLAKPDIHQKKVLLCLWWDRKEPVYYELLKQGQTINANVYCNQLDKLNAAIKEKRPALASRKGI
LFHHDNARPHTAMVTQQKLTALGWEVLSHPPYSPDIAPSDYYLFRSLQNYLMGKNFNSFEGVSKAVAEYFQSKNENFYRS
GIDRLPERWQQVVTNNGNYIIEKN
>Mariner-4_NV#DNA/TcMar-Pogo 1050-2684 [Nematostella vectensis]
MSSVLFCKSCKAETKYLCLICERAVCNRSECAKPLPEETPNWKSGSRVSACWSCTTSSSHVDGENNKESVNTEADGNSKA
KSRKRARETTAPKRNCLSLKQRVELINYAKDHPNEGYRKVAEHFGVGRTQAQKIIKESKAILAQYESNVRPSKQKRIRTE
TYQNVNDALWDWYTVCRLSNVPVSGPMLQEEALIIAEKLGVDGFTASNGWLQCFKEHYNLQRMATAGEDGDVSSETLESW
NERVREITRGWKPENVWNMDETGSFWKGLPDSSLNERGKRCNGGKSAKQRNTWAFFANSTGEKEDPIVIGNAAKPRCFKN
MKNLKRPYGCWYYSNPKAWMKSEIMEEVLGRLNEKLKKKSRKILLFMDNAPCHPQSLADSFSNITVKFLPKNTTSKTQPL
DAGIIANWKAKYKKKLLRYVCSKVDGEQTASDIAKGINVAMAIEWGKQAWDEVSPDTIVKCFKKTKLFPEEMEEEDDPFE
GEDELPALQELLNKVGGSCDASTFLSNEEEIPVCLPLVDALNPHWREDLREDLHDETNSVSSRR
>Mogwai1_Ei_p2#DNA/TcMar-Mogwai 2766-3413 This protein sees in the same reading frame as the transposase in Mogwai2_EI, but joining it with Mogwai1_Ei_p1 would require overcoming a frameshift and 9 stopcodons or introducing an intron. [Entamoeba invadens]
MVKPIINLPYSTDISAIQNVITSEMLNTEILDLYILWIKLRNVCLWKRSICLTDWNNFTDGGIIKKRVREAIKNMGICDT
FLLPVFYNSHFMLCGVFFVDSSTPIIAEFNSIKNYSSRFLRKVSKFLRDEFEKQKRINFNLKWVVEIQTPIQFDLISCGS
YSSYFIEAIFKSNPRCVNDIHKCFSDSSAFNFRTEILSLTSVDNIQRVLNLISYC
>CRMAR_tp#DNA/TcMar-Tc1 114-1199 [Ceratitis rosa]
MERYTIQQRVKVIQTYYENGRSNQNAYRALRDFFGQFDRPNVRTIAKIVEKFEQIGSVEDVRTPVHARTARTAENIAAVR
DSVAEEPSTSTRRRAQQLHLSRSSMMNIMHKDLHLHAYKVQLAQELKPLDHSKRREWAEWFQEMATVDDQFSKKIIFSDE
AHLHLSGFVNKQNCRIWANENPRVIVEKPVHPQRVTVWCGLWAGGIIGPYFFQNEAGQAVTVNGVRYREMITNFLWPQLE
DMDVDDMWFQQDGATCHTANETMALLRNKFNGRVISRNGDVNWPPRSCDLTPLDFFLWGYLKEKVYVDKPATTQELKDEI
IRHINGIETPLCLSVIENLDHRMEVCRRGRGAHLADILLHT
>Mariner-3_PPa#DNA/TcMar-Tc1 292-1410 via tfasty with Mariner1_PPa, 1 stopcodon. [Physcomitrella patens]
MGMFLAFIHIIVSIISAHHLCKLSKMVSLRYLFVVDRKLVEVAALQKLKRGESTRNVARDLYVSQSWIAQFCKQHLIDLS
DVNHSFGGRPRMYNATDxRTCVREITRGGKEIAHKVGNYLREELHVGMSDSIVRRVLREAGLKCKVKQKKPKLILCQIKV
RLEFAKHHCHWIDDDWDCVIFFDETKVNCFCSDGCSWYWFCDRQSTSARMVQQTIKFGGGGVMMWGCMTPNGPGMMCRIE
GRMDQYMYREILEQELIHIVHAYNLNPTSLIFQQDNDPKHISKSVHCWLNLQEFTLLKWLAQSLDLNPIKYLWATLKRQL
NQYETPPKRMLELWEHIEDCWASITPNECKNLYRSMHKHIRAVIAAKGRWTDF
>Mariner-3_MLP#DNA/TcMar-Tc1 124-1134  [Melampsora larici-populina]
MKPLPSDLKNQMVGMHLAKKRNVDISQTLGCPVTTVQSVLAKFKAEGSVEGKKPSGQPSLLTNRDLRHLECDVKKSRRAP
MREIVQGSATKASATTIRLALKSLGYNSRVAIVKPYLSAKHKAARLEFAKHYAAWTVDDWKRVIWTDESTFEIGKPYRKV
RVWRKVAEKYDASCLAPSFKSGRSSVMVWGGFIPGHKLKLVIMEPGRRNSENFIEQVYEKSLGPFLHDSSNTNNLILMED
GAPVHRSQLSSKWREREGIVKLKWPAQSPDLNPIENLWSIMKSEISTKHPIKDLDSMKANVSESWESVPTEKLEHLAASM
PERIQAVITAKGGSTXW
>Mariner-4_DY_tp#DNA/TcMar-Tc1 108-1190  [Drosophila yakuba]
MNRLTPEQRLQIVQFYFENNGSVRNTYRALRPFYRRQNRPSEQLIRLTMDRFRTAFTLIDNSHPQRRRTVRTEEAIAAVE
RSIEEDPNESIRHRAQELDLCPSTLWKILRKDLGLRAYKIQLVQELKPNDHQARRRFVEWAQNEIAVVPDFHKRILFSDE
AHFWLNGYVNKQNCRIWSEANPQVYVETPLHPEKLTVWCAVWAGGIIGPYFFKNDDGQNVTVNGDRYRAMITNFFIPELN
DHNVQELWFQQDGATCHTARATIDLLKDTFGDRLISRFGPVNWPPRSCDLTPLDYFLWGYVKSLVYADKPQTLNHLEDNI
RRVIADIRPNMLEKVIANWTSRLDYIRASRGGHMPEIIFKM
>Mariner-5_DK_tp#DNA/TcMar-Tc1 161-1153 Mariner-2_DBp_tp and Mariner-4_DEu_tp near-identical. [Drosophila kikkawai]
MSNNRCAILKLFQQGNRQCDIVRLLGIPKQTVSDAIRRFNELGHEGDRPGRGRPCTAKTSRIRQIVKKRITRNCRVSVRK
IAREIGVNRESVRLIAKNELNLKPYKLQKVHLLTDDNKRVRLQRCRQLKRRAAGQKWERILFTDEKIFTIQQAHNHQNDG
SWSAEAPGTSAIIERRQCEQSLMVWGGICATGKTPLVFIDQGVKINQEVYRRDILETVVLPWAQQHFXDTEWTFQQDSAP
AHRAKLTQDWCKANFPDFIISSEWPPYSPDLNPMDYSVWSILESRACAKRHISLEALKQSLLQEWDRLSEEDLRPIALNF
QKRLGLCIAAQ
>Mariner-4_TMe#DNA/TcMar-Tc1 710-1825 [Tuber melanosporum]
MGCEESIALRDLSQKDEEHWQKTFPEIAQELDIEAARSTLEQVFHSQHDIFRRKPAHKPSLSVAHIEARLAFAHMALQIA
INTIVFTDEMWVEFGKPRRQRNVSRYRGIDSNEYAIHDRDGEKQPIRIMFWGAIIQGAKGPYHIWEQDTVEEKAVFQEVV
NEENQIRQERQQFNQQQAQVSGTWQHRTLSEFNNNIEVQNQEERRTGRNKRKKRKAEQVFKEAELGFTSKGGINWVSYRE
RVLRPKLYPWMKSIREIRGVPQLYLVEDNAPSHQTARRIDYDERQSSGIFTLDWPSKSPDLNQIEPIWDYQKDEVSTWQL
VGASRMAVERAKEALARTWEALPQAVIDQKCQSFHEKLQRVILHDGNNNFNG
>Mariner-2_MLP#DNA/TcMar-Tc1 50-1135  [Melampsora larici-populina]
MCEGISPLPSKFLEQLLIIVSQKMKTRCLEPVERARIIGMHKAGLSGTKISKKLHHPRPTVYTVISKFKRTNTFSSSKAS
GRPKKLTDQDRRSLVRQAKKDRRAPLANIASNLPTQVGCTTVRSELHKLGFHSCVAVAKPYLTPSHITKRLKFAKKHKNW
TVDDWKKVIWTDESSFEIGKNSRQVQVWRKAGEKYNKDCLTPTFKSGRSSTMIWGAFTANSRLDMIFMEPGKQTGSDFVK
QVYEGSLGPFLNSPTTPSGLILMEDGAPVHRCKVAQSWRDMHPISKLEWPANSPDLNPIENIRRDMKMAVSTKHQPRTVS
EMKTVLNLEWNSIPDSKLESLVASMPARMQAVIEAKGGHTKW
>Joey1#DNA/TcMar-Tc1 255-1271  [Metatheria]
MDITPRKYAKVVALKEHTSMTVRDIAAAVGVGKSSVSRIIQAHNETGSVXPKHKGKCGRKRKTMPRTDKLLLQNSLINPQ
KTSKDLQRDLAAGGVVTDSSTVRHRLLEVGRTVRRPVKKTAANHCYEEKYLSWARQYKDWSTEDWKKVIFTDETHFFIQG
YTKTIVRRSPGEPVRSGHLHQTVKHLPPKIFWGFFTSSGPGSLVPIEGMMNSDKYIDILRSRIVPELQKFPNGDGILQHD
LVPCHTSRKVKKFIQEMEINMLQWPGNSPDLNPIENLWAIIKARLGKMDCSSKVCLISNVIKVWFHDEELKNICQNLVNS
MPNHVKQVIAAKGGHIAY
>ITmD37E_Ele13_tp#DNA/TcMar-Tc1 152-1168  [Aedes aegypti]
MASKQEENRRRILRAVMENPTASMRWIGRQLGITHTTVSRVVKSFKESQTTERRAGSGRKSKTADPVKARKVLDYFKRNP
NLSIRDAALKAKCSAWFVQQTMKRAGLRVFKVRKAPNRRDQQNTAAKSRARKLYREWLTKPKCVVMDDETYIKADAKQIP
GLEFYVAKSRFDVPEDIRKKKMDKFAKKYLLWQAICQCGKLSKPYITTGTINSEIYRTECLQKRLLPFLRSHGGETLFWP
DLASCHYARSTLDWYRDNNVVFVPKTANPPNSPEIRPVERFWAIMKAKVRKSSKVFKNELELKKAWMKVTKKVGSTIAQN
VMRGLKGKVRAFSEGKDIE
>Mariner-1_DK_tp#DNA/TcMar-Tc1 340-1367 via tfasty with Quetzal_tp, 1 frameshift. [Drosophila kikkawai]
MDGKGKQIQDSERKIILKLHLEGKSYRDIGGILGRAHSSVQRVISNYISTGSILPKLREGRPCRLTKRGKRRKVVFMVQN
NPKLTSREVQQEVESRFSKTVSYSTIRRIIKKSGFMSCVARKKPYISKTNREKRIQFAKDHISKPPEFWKSVIFSDESKF
CIFGIKGKKLIWRKSGEALEKQNLLPTVKHGGGGIMIWGCMAANGVGNLHFIDGIMDHKIYIQLLKDNLVQSATKLGLQN
KFIFQQDNDPKHTAQNVKLWLLYNVKNQLKTPPQSPDLNPIEHLWDLLERRIRQHSITSKAMLKTILQQEWDQIAEAETE
KLVNSMPRRLAEVLKRKGYPTSY
>Mariner-1_MLP#DNA/TcMar-Tc1 119-1135  [Melampsora larici-populina]
MKTRSLTSEERAEIVGARKSGLTMGQIAKKLNHPRSTVSTVLSNYQKNATTNPQSHAGRPKKLTDRDRRTLKRTLRKDRR
STLSEISAQIPTRVCHNTLRAEIKDLGFNSRIAVKKPYLSAQHRRKRLGFALAYKDWTVEDWERVIWTDESSFEIGKMSG
PVRVWRKSNEKFELDCLTPSFRSGRSSVMVWGAFTSFCKLPLVLIPPGRRSSSDFISVVYERALKPFVTHPCCPSNLILM
EDGAPVHRSQASKEWHASHSILKLDWPANSPDLNPIENLWKILKSSISKEKRPKSQQEMYHLLVSKWMAIPESKLKSLVA
SMPERIRAVIKAKGGATRW
>Mariner-1_DVi_tp#DNA/TcMar-Tc1 212-1414  [Drosophila virilis]
MLSIKCFYSYGKLFCRSLLGDPVRFGPMRFGFSCVFDFSCHFLLQFITFCFNFMKNKMPGKRTTFEVAQLVYYNHQMGRQ
VSELADMFNLSKATIYNILNRANKEDRLEAKPVCGRPCKISDRDKRKILRKIEKNPQISLRDIAQEFKEESGVDVSHETV
RKLLNSNDYTSRVARKKPLLSAANILKRLSFAQVHVNSSNDFWSNVIFCDESKMMLFYNDGPSRVWRKPLTALENRNIIP
TVKFGKLSVMVWGCISSKGVGDLTFIENTMDARQYLSILQTHLVSSAQKFGFYEDNKPIFKFYQDNDPKHKAHMVRVWLL
YNCGKVLDTPPQSPDMNPIENVWSYLKKKVAKRSPKSKTDLKAAVLEEWQKIPETYIQNLIVSMKRRLQAVCDANGSHTK
Y
>F21I2-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDVGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQILERLANHP
YYCFLYGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGCSFS
SCLLNLCRVLKRCEETNMVLNWEKCHFMVREGIVLGHKI
>F8N14 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
WRANPVVVMKKNGKWRVCVDFTDLNKACPKDSFPLPHIDRLEESTSGNKLLSFMDVFAGYNQIMMNPEDQEKTTFYTEQG
MFCYRVMPFGLKNVGATYQRFVNKIFALHIGRTMEVYIDDMLVKSMEEEEHISHLRECFQQLNLNNVKLNPAKCRFGVRS
GEFLGYLV
>F9M8 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
YPISDSTSVSPVHCAPKKGGMPVIKNYKDELIPTRTITRHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHPYYCFLD
GYSRFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSFFSSCLSNL
CRVLKRCEETNLVLNLEKCHFMVKEGIVLGHKI
>F28L21 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDVGVIYPISDSTWVSPVHCVPKKGGMIVVKNEKDELIPTRTITGHIMCIDYRKINAACRKDQFLLSFIDQMLKRLANHP
YYCFLDGYSGYFQIPIHPNDQEKTTFTCPHGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLCHKI
>F26B15 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDTGIIYPIFDSTLVSPVHSVPKKGGMIVIKNYKDELIPTRTITRHRMCITYRKFDAASKKDHFPLPIIDQMLKRSTNHP
YYCFLDGSNRFFQIPIHPNDQEKATFTCPYGIFAYKQMPFGLCNAPATFQQCMTIIFSDLIEETVEVFMDDFSLHGSSFS
SCLLNLCRVLKRCEETNLVLNWKKCHFMVREGIVLGHKI
>F19C17 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIPPTTSPWGAPMLFVKKKDGSFRLCINYRGLNRVTMKKKYPLPRIDELLDQLRGATCFSKINLTSGYHQIPIEEA
DVARFQGERWNFEYVVMPFGFINAPAAFMRLMNIVFQEFLDEFVIIFIDDILVYSKSPEEHELHLRRVMEKLREQKLFAK
LSKCNFWQREMSFLGHIV
>aF19N02 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVQNPDWVANTVVVKKKNGKDRVCIDFTDLNKACLKDSFSLPYIDRLVESTGNELLSFMDAFSGYNQIMMNPE
DQEKTLFITDRGIYCYKVMPFWLKNAGATYQRLFNKMFNEHLGKTMEVYIDDMLVKSLKKEDHVKHLEECFAILNQYQMK
LNPAKCTFGVPSGEFLGYIV
>aK11J14 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
SIVEVKYPEWLANPVVVKKKNGKLRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGMDAFSGYNQILMRPDDQEKTAFIT
DRGTYCYKVMPFGLKNFGATYQRLVNRMFADQLGKTMEVYIDDMLVKSAREKDHVPQLRECFKILNKFEIKLNPEKCSFG
VPSGEFLRYLV
>aF17M07 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVQYPDWVANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIFRLVESTAGNELLTFMDAFSGYNQIMMNP
EDQEKTSFITDKGIYCYKVMPFGLKNARATYQVNKMFNEHLGKTMEVYIDDMLVKSLKKEDHVKHLEECFAILDQYQMKL
NLGKCTFGVPSSEFLGYIV
>T18O6/F7E22/F23M2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEAGIIYPISDSSWISPVHVVPKKGGVTVVKNEKDELIPTRTITGHRMCIDYRKLNAATRKDHFPLPFIDQMLERLANHK
YYCFLDGYSZFFQIPIHPDDQEKTTFTCPYGTFTYWRMPFGLCNALATFZRGMMSIFIDMIEDIMEVFMDDFSGYGSSFE
DCLENLYKVLARCEEKHLVLNWEKCHFMVZDGIVFGHKI
>Athila4-10 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNEKDELIPTRIITGHKMCIDYRKLNATSRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPTTFQRCMTSILSDLIEEMVEVFMDNFSVYDPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVNEGIVLGH
>F10A2-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDADIIYPISDSTZVSPVHCVPKKGGMTVVKNDLDELIPTRTITGHIMCIDZRKLNAATRKDHFSLPFIDQMLERLANHV
YYCFLDGYSGFFQIEIHPIDQEKNHFHLPLWNFSLZENAFGLCNAPGTFQRSMTSIFSYFIEEIMVVFMDDFSVYGSSFS
SCLLNLCSVLERCEETNLVLNZEKCHFMVZEGIVLGHKI
>F9M13-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVKYPDWLANPVVVKKKNEKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGHELLSFMDAFSGYNQILMRS
DDQEKTAFITDRGTYCYKVMPFGLKNAGATYQRLVNRMFADQLRKTMVVYIDDMLVKSAREKDYVPQLRECFKILNKFEM
KLNPEKCSFGVPSGZFLGYLV
>F7K15 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEAGSIVEVRYPDWLSNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPRIDQLVEATAGNELLSFMDAFSGYNQILIHZ
NDREKTAFIIDRGTFCYKVMSFGLKNARATYQRLVNZMFAEQLGRTMEVYIDDMLVKSTHAAEYVSHLQQCFDVLNKYNM
KLNPAKCTFGVTSREFLGYLV
>F6H8 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
GSIREVKYPDWLANPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEAIVGHELLSFMDAFSGYNQILMRLDDQ
EKTAFITDRGTYFFKVMPFGLKNAGATYQRLVNKMFADQIGKTMEVYIDDMLDKSAHKKDHVPPLKZCFKILNKFEMKLN
PEKCSFGVPSGEFLGYLV
>F8D11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGAPVLFVKKKDRSFRLCIDYRGLNQVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEA
DVRKTAFRTRYGHFKFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREZKLF
AKLSKCSFWQREMGFLGHIV
>F28L22 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVKYPDWLANPVVVKNKNGKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAFSGYNQILMRP
DDQEKTAFITDCYKVMPFGLKNTGATYQRLVNRMFADQLGKTMELYIDDMLVKSAHEKDHLPQLRECFKILNKFEMKLNP
EKCSFGVPSGEFLGYLV
>F9B22 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDKGFIRPSSLPWVAPVLFVKKKDGSFRLCIDYRGLNTVTLKNKYPLPRIYELLDQLKGAKWFSKIDLASGYHQIPIDPR
DVRKTAFSTRYGHYEFVVMPFGLTNARTAFMKMMNGVFREFLEEFVIIFIDDILVYSKDEGTHQNHIRAVLERLRGHKLF
TKLSKCSFWQRRVRFLGHIV
>F7B19/T15D9 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSIWVSPMHCVPKKGGMTVVKNZKDELIPTRAITSHRVCIDYRKLNAASKKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPTDQZKTTFTCPYGTFAYKRMPFGLCNNPTTFQRCMTFIFLDLIEEIVEVFMDDFSVYGPSFS
SCLLNLGRVLTRCKETNLVHNWEKCHFMVKEGIVLVHKI
>T3B16 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
FEAGIIYPISDNDWGSPVHVVPKKGGVTVVKNDNNELIPTRTVTGHRMCIDYRKLNAATRKDDFPLPFIDQMLERLANHK
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYRSMSFGLCNAPAIFZRCMMSIFTDKIEDFMEVFMDDFSIYGSSFE
ACLEKLCKVLARCEEKNLVLNWEKCHFMVQKGKVLGHKV
>Tma3-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKRFIRPSTSPWRAPMLFMKKKDGSFRLCIDYRGLNQVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSDYHQIPIAEA
DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVKEKLREQKLF
AKLSKCSFWQREMGFLGHIV
>Athila4-6 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNEKDELIPTTTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDNFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKI
>Athila4-4 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHCVPKKDGMTVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHP
YYCFLDGYNGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKI
>GB:AAA83517 unknown protein (ISa-element) [Bacillus thuringiensis]
MNLSIQDELQLFSEELCRHLTPSFLEELAKKLGFVKRKRKFSGSELATICIWISQRTASDSLVRLCSQLHAATGTLMSPE
GLNKRFDKKAVEFLKYIFSTLWKSKLCKTSAISSTALTHFQRIRILDATIFQIPKHLASIYPGSGGCAQTAGIKIQLEYD
LHSGQFLNFQVGPGKNNDKTFGTECLDTLRPGDLCIRDLGYFSLEDLDQMDQRGAYYISRLKLNHTVYIKNPSPEYFRNG
TVKKQSQYIQVDLEHIMNHLKPGQTYEIKEAYIGKNQKLFTRVIIYRLTEKQIQERRKKQAYTESKKGITFSEKSKRLTG
INIYVSNTPEGIVPMEQIHDFYSLRWQIEIIFKTWKSLFQIHHWQNIKQERLECHVYGRLIAIFICSSTMFKIRKLLLQK
NKRELSEYKAIGMIQDHVSLLYQAIQRNTQDLTKILIRLFDLLQKNGRKSHRYERKTIFDIMGVVYEYNGFGKQKKAA
>GB:CAA44990 transposase (ISa-element) [Bacillus thuringiensis]
MNLSIQGELQLFAEELHQHLTPSFLENLARELTFVKRKRKFSGHDLAIICVWVSQRVASDSLVRLCSQLHAVTGTLMSPE
GLNKRFNKKAVCFLKHIFSTLLKNKICETSLIPSSSITYFQRIRILDATIFQVPKHLANVYPGSGGCAQTAGIKIQLEYD
LHSGQFLNFQVEPGKNNDKTFGTECLATLRPGDLCIRDLGYYSLDDLDQMDQRGVYYISRLKLNNMVYIKNEFPEYFRNG
IVKKQSQYIKVDLEHIMNTLKPGQVHEITEAYIGKDKKLFTRVIIYRLTEKQLRERKKKQVYTESKKGITYSEKSKRLAG
MNIYVTNTPLEWVPMEQIHDFYSLRWQIEIIFKTWKSLFQIHDWQNIKRERLECHIYGKLIAIFLCSSTMFKMRQLILQK
KKRELSEYKAIGMIQDHLYILYQAIQQNTQEITRILIRLFHLLQKNGRKSHRYEKKTVFDILGVVYEYTGLIKQKKIA
>GB:AAA83518 unknown protein (ISa-element) [Bacillus thuringiensis]
MNLSIQDELQLFSEELYRHLTPSLLEELAKELGFVKRKRKFSGNELATICIWVSQRTASDSLVRLCSQLHAATGPLMSPE
GLNKRFDKKAVEFLKYIFSALWKSKLCKTSAISSAALTYFQRIRILDATIFQVPKHLAHVYPGSGGCAQTAGIKIQLEYD
LHSGQFLNFQVGPGKNNDKTFGTDCLDTLRPGDLCIRDLGYFSLEDLDQMDQRGVCYISRLKLNHTVYTKNPFPEYFRNG
TIKKQSQYIQVDLENIMHTLKPGQTYEIKESYIGKNQRLFTRVIIYRLTEEQILERRKKQSYTESKKGITFSEKSKRLTG
INIYVTNTPWEVVPMEQIHDFYSLRWQIEIIFKTWKSLFQIHHWQTIKQERLECHVYGKLIAIFICSSTMFKMRQLLLQK
HKRELSEYKAIGMIQDHLSLLYQAIQRNTRIITKVLIRLFTLLKKNGRKSHRYEKKTIFDIMGVVYEYNGLRKQKKAA
>GB:AAA85864 ORF (ISa-element) [Mycoplasma hyorhinis]
MKYSLEFKLECVKKYKKGIEIKKPDFANTSQKNFLNQVNFWEKIYDKLGVEGLKKKPRNKKWTIDQRLNIVKRFLAGEPI
VKISLENNLNPSLISFWAKKYLESGISGLELNKGRPIMKSKINNNKSTKVSNNSDSQNQSNSSLSIYEELKLLREENKLL
KKENEVLKKWKALVEIFDSSQPRQEKIKKIYNRVKADKNLRLTQVLKEFSIPISTFYYELKKEDFDNKNEEIISQMKLIF
VENKVRYGKRRIKAELNNRDYKIGFKKVRRLMEKFNLKAICPRKKYKSYKGTVGKIADNILNRNFVATQPNQKWTTDVTE
FSGPFGKAYLSPILDMFNGEVIAWDLSTSANNHQIRKMLQRAFSKHKNLEGLIFHSDQGWQYQHKQFSEKLKQKGITQSM
SRKGNCLDNSIIESFFGTLKRECFYGREKEFLTFKQLHKAIANYIYYYNHKRIKDKIKWMSPIKFWETFISNYN
>GB:CAA27132 transpoase (ISa-element) [Bacillus thuringiensis]
MNLSIQDELQLFSEELCRHLTPSFLEELAKKLGFVKRKRKFSGSELATICIWISQRTASDSLVRLCSQLHAATGTLMSPE
GLNKRFDKKAVEFLKYIFSILWKGKLCKTSAISSTALTHFQRIRILDATIFQIPKHLASIYPGSGGCAQTAGIKIQLEYD
LHSGQFLNFQVGPGKNNDKTFGTECLDTLRPGDLCIRDLGYFSLEDLDQMDQRGAYYISRLKLNHTVYIKNPSPEYFRNG
TVKKQSQYIQVDLEHIMNHLKPGQTYEIKEAYIGKNQKLFTRVIIYRLTEKQIQERRKKQAYTESKKGITFSEKSKRLTG
INIYVSNTPEGIVPMEQIHDFYSLRWQIEIIFKTWKSLFQIHHWQNIKQERLECHVYGRLIAIFICSSTMFKIRKLLLQK
NKRELSEYKAIGMIQDHVSLLYQAIQRNTQDLTKILIRLFDLLQKNGRKSHRYEKKTIFDIMGVVYEYNGFGKQKKAA
>GB:CAA57483 ORF (ISa-element)  [Enterobacter agglomerans]
MELSHALGIINLTAPDEVQSLADLLSPDLIQQAFSLTDTVTLRKRKLPLESMVWLVIGMAIFNNKPMSHIVNLMDIVDRT
GRSFTAPSSVIARRKTLGEDAIRVLFDITQQHWHAEAKHPLWHGLTLNAVDGVVWHTQDTPENAEAFGKASNQHGERGYP
QVRMVCLMELSSHLLRASVMDSYDVNEMRLAAQLAASAPDNSITLFDKGFYSLGLLHDWHNAGENRHWLTPLKKNTQYEV
VCKPGKQDELIRLKTSPQARKQWEGLPEEMTVRLIRRKVNGVERQVLTSMTDAMRYPAASVAELYKHRWEIELGYRETKQ
FLLGNRWALRSKLPEMVRQELWGILLSYNLIRYQMIKMAFSLKGDYLPYQLSFSGAVSEILRLLIGLPWASAGAIPGHLK
HFYSNAAMLKLPSRREREYAREVREKRSKYPLKNNPGHLK
>GB:AAB61715 ORF2: function unknown (Mariner_Tc1-element) [Homo sapiens]
MDEQRKWFLEMESTPGEDAVNIVEMTTKDLEYYINLVDKAAAGFERIDSNFERSSTVGKMLSNSIACYREIFRERKSQSM
RQTSLLSYFKKLPQPPQPSATTTLISQQPSTSRQDPPPAKRLRLAEGSDDR
>GB:AAB92394 putative reverse transcriptase (LINE-element) [Drosophila subobscura]
GKPLNLRLSGAQHAYRKGKSTETALHEVISAVEKSLHVKEYSLIAFLDIEGAFNNVIPGAITEALTDLGVDRHLVMLIDQ
LLTCRTVTSSMGSSTQSRYVNRGTPQGGVLSPLLWNIAVNKILCDLEGEGCKVVAYADDVAIIFSGKFPQTLCELMTAKL
ARLSEWTKSRGLGINPSKTELVLFTNKYKIPPLNPPILNGCRLSFSDSASYLGLVIDKKLSWNLSIKDRVKKATIALYTC
KKAIGLKWGMNPRIVQWIYLAIVRPILLYGVTVWWTALSKGTITKQLSKVQRTAALSISGALSTTPTDALNAILCLQSPE
LAGKEQAEMAAIRLRDSDQWVSQRTGHASILNGNNIVPAKTDYCVPREYTDTPFETIIPHRNDWLEGPPGPKEAIQIFTD
GSKLDNKVGGGIYSELLNISYSFRLPDHCSVFQAEVIAIKEALSCLQELTPEATYINIYSDSQAAIKSLNAITTSSATVA
NCRKSLHEMAYQFVISLIWVPGHQDIEGNCIADELARAGTTIPLLNDKEDIRMPMATCKLRIKEHFKKLTNDRWQTVPLC
RITRQTWPNINRKRTDELCKLSRSRCSSVIRSLTGHWLIGTHANRLGAPYNDFCRSCRDEDEEETVEHLFCSCPALSRRR
LQYLGSPFLNDISDMSTISPRRIAGFIRASGWDNG
>GB:CAA82359 transposase (Mariner_Tc1-element) [Drosophila hydei]
MSQYSMQKNFRLLQISRSLATMVRGKPISKEIRVLIRDYFKSGKTLTEISKQLNLPKSSVHGVIQIFKKNGNIENNIANR
GRTSAITPRDKRQLAKIVKADRRQSLRNLASKWSQQLAKLSSESGRDKLKSIGYGFYKAKEKPLLTLRQKKKRLQWARER
MSWTQRQWDTIIFSDEAKFDVSVGDTRKRVIRKRSETYHKDCLKRTTKFPASTMVWGCMSAKGLGKLHFIEGTVNAEKYI
NILQDSLLPSIPKLLDCGEFTFQQDGASSHTAKRTKNWLQYNQMEVLDWPSNSPDLSPIENIWWLMKNQLRNEPQRNISD
LKIKLQEMWDSISQEHCKNLLSSMPKRVKCVMQAKGDVTQF
>GB:CAA23540 IS-2 ORF 3 (ISa-element) [Escherichia coli]GB:CAA23540 IS-2 ORF 3 (ISa-element) [Escherichia coli]
MRSCTSFSDEPMTGWMAAAVVTLMIRMCFSVYTMLSESCQRMVIVGYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLS
ENLLYRHRNGHIQAEWP
>GB:CAA35234 open reading frame (AA 1-192) (Mariner_Tc1-element) [Drosophila heteroneura]
MVNLSTTTVFNIIRRFVDENRIEDKGRKAPNKIFTEQEERRIIRKIRENPKLSAPKLTQQVQDEMGKKCSVQTVRRVLHN
HDFNARVPRKKPFISTKNKGTRMTFAKTHLDKDLEFWNTIIFEDESKFIIFGSDGRNYVRRQSNTELNPKNLKATVKHGG
GSVMVWACISAASVGNLVCIETTTDRNVDLSI
>GB:CAA71079 transposase (ISa-element) [Bacillus thuringiensis]GB:CAA71079 transposase (ISa-element) [Bacillus thuringiensis]
MFKKEVSESVNGGALKYTVRYHIIESLKGKYPVIWLTKFAGVHHSSYYKWIHTKSMKNIRLESEKRLKKVIQSIHVRHKE
YGYPRMKIALQEEGYFINHKKVYRLMSELNIQSIIRKKRRFFKGNYSNVFPNVLNREFKDRQQNEALVTDITYLRFQEGF
RYLSVVQDIYNNEVVSWKISKRNDNELVLDTIEMLAQKRDVRGTILHSDQGFQYKSHAYNKRLLGLGIIGSHSRKENCHD
NACIESFPSHFKSEMLYLNHFKTEADLIQAIEEYIYFYNYKRFQKRLNHRAPIEYRISMAA
>gi|12958103|gb|AAK07487.1| gag-pol polyprotein [Clonorchis sinensis] (Gypsy_Ty3-family)
MEAHFDSADLVENAISIRLPDYNPRNPRVWFHQVEAVFATRRITSQATRFSYVVQHLPCDVATEVEDLLEDIPKENPYDS
LRAAVISRTGKSENKMLRDLFTTVELGDRSPSQLLRHMRSLLCGRKLAVEIMAQLWLDKLPPSMSRVISAFVDDHSLEQL
AQMADKIHETYPSNPVNSVSRSAPTASTDSDPILASISQLQAKFDTLTDRLQRLEINKHRPRSRSRSLSRARPSWCWYHQ
TFGPQARKCQPPCSFKPRSNTPFKHPGQSVTATTVCGPPRTSRLFHITDRSSGLRFLVDTGAEVSVLPHKTPLHGSASYS
LQAANGTRIATYGERSLTLDLGLRRAFKWIFLLADVQTPIIGADFLTHYNLSVDVRNKRLLDMLTSLSVNGISAPASSTG
IRVILPDSHFADILRDFPTLTHPCQYTQPVTHSVVHHIQTKGPPVHANPRRLHPDKLPIAKHEFEHMLELGIIRTSSSHW
SSPLHMVPKKSKGDWRPCGDYRSLNYATIPDRYPIPHIHDFASTLCHTNIFSKLDLVRAYYHIPVAPDDIPKTAITTPFG
LFEFTRIPFGLRNAAQTFQRFMDEVLRGLPFVYAYLDDVLIASTSPTEHAAHLRAVFERLSTYSIRLNIDKCLFGVTSLD
FLGHHIDSTGISPLPDRILALESFPIPTTLTQLRRFIGIINYYRRFIPHCADILQPLTDLLGSKEKSVTLPPVAIAAFER
AKQAIAHATKLSFLDTHESTKLILTTDASNAAVGAVLHQVVNNASQPLTFFSQKMQAAQTRYSTFGRELLAIYLAIRHFR
HLLEGKSFTIQTDHKPLTYAFNAKPDRYSPREIRHLDYISQFTTDIRYTPGSDNVVADALSRPDINALQPSKQLDLAKLA
NLQHSDPNFLPILSFPSFQVSSIPLPLQSGSIFCDMSTGSARPIVLEAFRRVVFDHFHGFSHPGIRATRKLISARFVWPF
MNKDLTSWAKQCIACQRSKVTRHANSPIGSFAVPDARFTHVHLDIVGPLSPSNGFTHILTMIDRFTRWPVAVPISDTSAE
TVAFSFLQHWVSNFGIPSTVTTDRGPQFQCNLFREFSTLFGFHHISTTAYHPCSNGLVERFHRYLKAALTAQMNPSSWSF
SLPLILLAIRSTIKEDLHCSPAELVYGKTLRLPGELVSTSGAQPESPVTFVTRLKQHMSDLRATPTRRSTRKEHISTDLS
STPFVFVRHDATRKPLQPCYDGPFKVIERHSKYLVLERSGKHDIVSIDRLKPAFVEAPTTTSSNPANPATPAPTQDTPAA
NLTPSTSRSGRRVRFPQHLADYET
>Q9ST50 /257-429 Pfam PF03108 MuDR family transposase (MuDr-element domain)
ERDPAVHEFSSLSHCNGAYAEGRDDELLEASDNADNIDIKVGLLFKDLPTLRQWLQEYSVNRKRPFKVRHSYAQRRYTVV
CEVSECNWRVCARRQKETGKFKITKIVGPHTCAQTELSSKHRQLTSTLIAKRLLGTLKGQPNLKVKSIMTMTWELFGYKI
KYGKAWRAKQRAW
>T12K4-3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
WLRESLSPCAVPALLIPKKDGSWRMCVDSRAVNKITVRYRFPIPRLDDLLDQIGKATIFSKLDLKSGYHQIRVHPGDECK
TAFKTREGLFEWLVMPFGLSNVPSTFMRVMNQALRPFIZNFVVMYFDDILIFSSSLEEHQDHLRQILVVLHREVFLWHNK
SVSGSCSFSRICSLIK
>aT19K21/T17A11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKAGLIKEVQYSEWLANPVVDKKKNGKWRVCVDYTDLNRACPKDSYPLPHIDRLVEATAGNQLLSFMDAFLGZYQILMHK
DDCEKTAFIIDRGIYCYIVMPFGLKNAGVTYQRLVNEMFAELLGVTIEVYLDDMLVKSLQAEDHMKHLTACFDILNKYEM
KLNPTKCTFGVTSGEFLRYIV
>F9M13 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
MDKGHIRESMSLCAVLVLLVPKKDDCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAI
KTKQRLYEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVLDLLRKEKLYANLKKCT
FCTDNLVFLGFVV
>gi|2454527|gb|AAB97815.1| PttA [Petunia x hybrida] Spm/En-like (CACTA-like)
MTRGRGRGRGKIGRGGRSIVRGNVTARLNMPTVPTPEIVPEQGGTNCSGGPTDTPPVRTSVGSGSPNIHFEASPAAPNQS
ATIGEGVSVHNNTAGEVESSSSHGRRTLLTLSPTTGLEPSRLCSESISAAFRHELDPNGINWKNVSQELKDFYYGEFKAF
YWDSSIENAVKIEWKRKAARRYSDFVSKIKADGIQLNCIHDNVWASWLRLWEDPKCREKSETAQRNRCGGNEVALGTHTG
GSITVGEHRKRLVIDKGRDVTPAEIHLHVHTHGHDGKSFVGERSRIVHERYEEILQQTQTQSDIDKCQAYYQAAGGEKKR
RVYGLGCEAQNYYGQHLRPAFGSDATSSVPPSSAQQPPIGNMDEFMTRLIPALTDHMLPLFIERVRAMILHPQINQTLLP
TLLHP
>GB:CAA48851 ORF3 (ISa-element) [Corynebacterium glutamicum]
MRSVNTSVIRVKDRPRQASALALSHQQRVLHQGGTHVICDRKAHQPAGIAVNDRSQVHIRPISNRQVRDVPDVHLIWLIS
GELPADKVRKHCLGFIRHSGGDLAFLCVAKQLQRAHHPSDPLVIYGVMIHLVFEFSGDPLGPITTIFGGEDSLDSSPEDR
VGHEAFPAC
>GB:CAA48850 ORF2 (ISa-element) [Corynebacterium glutamicum]
VIRFRFVDDASKTYSVKRICDVLKLNRSSYYKWKSTCSARRKRLMSDAILGARVKAVFTTENGCYGAKRITAELKDQVDH
DPVNHKRVARVMRSLKLFGYTKKRKVTTTVSDKTKTVFPDLVGRKFTANKPNQVYVGDITYLPIADGSNMYLATVIDCYS
RRLVGFSIADHMRTSLVQDALLMAKGQRGSLTGAIFHSDHGSVYTSHAFQDTCKDLGIRQSMGSIGTSADNALAESFNAA
LKREVLQDSKTFMNQLPCRRDVFRWCTRYNMVRRHSWCKYLAPAVFEKRCPAILKSAS
>GB:AAC05649 probable transposase-related protein (ISa-element) [Leptospira interrogans]
MKSNCLEHSIGSMARVLGVSRSGYYKYLNRHKDRSVAPDLTNFLQEKWLKSRKNYGFKRLFQEVKKSNLPYGARKVRKAM
KHCKISGKQRKQFRPLTTNSKHGGRIAPDLVQRKFHPNEQNRIWVSDVTFIRTSFGWSYLCVILDLYSRKIVGWSLSDRN
DSQLVCDTVLKAVLSRNPRKGLIFHSDRGSNFCSKETRRLLIANGIRRSNSRKGNCWDNAVAESFFSSLKREIEYNTFYN
IEEAEHLLFDFIEVYYNRFRFHSTLGYMSPEDFETNIA
>GB:CAA39912 putative coding sequence (ISa-element) [Agrobacterium tumefaciens]
MSNDYRHVELLTGDVSRRRWTTEQKLTIIEQSFEPGETVSSTARRHGVAPNLLYRWRRLLSEGGAAAVDSDEPVVGNSEV
KKLEDRVRELERMLGRKTMEVEILREALSKADSKKRISRPILLPKDGSR
>GB:AAC44032 ORF2 (ISa-element) [Agrobacterium tumefaciens]
MTAVCETFGVARSNMAERVRQRPSKARGRPPFADDDLVDEIKAIISEMPTYGYRRVHALLRRKARWESRSWPNVKRVYRV
MKVHGLLLERHTGAIDSRRHDGRVAVAQSNLRWCSDGFEIGCDNKEKVRVAFALDCCDREAIAHVATTEGIKSEDVQDLV
ITAVENRFGRINILPKPIEWLTDNGSCFIASDTKSLLLDIGMEPRTTPVRSPQSNGMAEAFVKTFKRDYVSVNSIPDAKT
VIAQLPLWFEHYNTLHPHKALGYRSPREFLNRQTEI
>Pi_model.supercont1.19.4.1 1429 (mutator-like) mutator-like transposase [Phytophthora infestans]
MDAPFTFGWQLDCEGKPMVGDGSDRKPFVVGLTTKVLVMRLLQSPDHFILHIDATYKMNCRGYPVVVVGVSDRSRRFHLV
ALYVVSQETQPIFEAALFSLRRLLYWVTQKDLQVRYAMADADQAQYNALHVVLGHYPGFQFIMCFFHVIKNVMKSTNTFP
SGVTAALARDVYDLHFTKSDFEFQQLREVILMNWMSDSSLVGFAQYMKAQWLHGRFRAWQTFLTPSGFAATNNPSETFNA
LLKRDYTLRRRLKMGTLFRELAACCHDLSTSIRPFSYDISTSKTLTRRVAEMTRERLIGVCVGLMPENRYAGGSTILKVA
SQLAKRVSVAPHNRKEEGIAVSAQMGVNYARMEVQGQRWEGWPVDLTQRWCPCNYCYAFGVCVHVLFALRVTENVDSSGR
NVLVSRSK
>Pi_model.supercont1.18.8.1 1534 (mutator-like) mutator-like transposase [Phytophthora infestans]
HEMRCIVTKCASQRCAASGETCKCRYKILACEEVDFKSVLEQELHVMTDDAPDSPVNPKLTDEMKTYILAKLNDSPSMVP
QLLFAFLCREVQQDRMLGPTPEFKHVQNFVKGWRRKNEPDSMAPVIEICRQCMYDREDREDRGRGDLLVFSDVIDVNGLV
KSALGSGSEAKPFRIGLTCMELIARYVAVQQNALFYTMMHLDSTHSIVKQKYPVFVVGISDCSGAFLPVVYFCTSQRREV
DIVWCIAFLKRVVYREFGVQFSPDYVMMDADKAQYNACVSELPHSKILMCWFHVTQNVAKHLHDEKLDIVSKQLIFQNLY
DLHFAATEEDFLRKRDYVVSSWRGGGWSIISCRFSYWQAFHTPVGYAATNNPLETYHYTLKLVNDNKRANPAELVTRLDL
SRIAYVASMAPFSDDPKVSKRLKASYRKAEKTKPMVASIVHRLGDLSPVLVQIAPSAGIPSITQSSISDTLEGNQSTAPS
EALNEVRRSYEAANYARLTWIGMPRGGWIVNATHRSCMCLIWKKSGICFHVIKA
>Pi_model.supercont1.6.8.1 1606 (mutator-like) mutator-like transposase [Phytophthora infestans]
LLDCFKQTRVAKSELAPCSVCMAPVPHPMRIQRLFCACKACADVTSAQECLWRARVMSCQEQGLVTVEEAYTYATPARSP
RKLVLTPPMKEVVKDWAAQALKPKRIYNALLQRFNLTEATAPSLSTVQRFAHHHVTGRLGGSDLLDSVRRKIKDSGFTGH
EDEAAPFTFTSRSDTDGKPITGNGSDADPFVVGVSSKKLLRRADRDPESFIFHLDTTYKLTQVGYPVIVVGISDRARRFH
LLAIFIVSQQQQLHYTEVLALVYKMYQTIVGKFLRVRYVMGDADAAQWNAVNDVFGQGGEFVYLMCYFHVPKKVYEKTRS
LGSVAASSVMKYIHELHFSTDEAAYNSKLGEAQARWSKTPELAKFSSYFSKVYLNERVWRWQCFHTPSGFATTNNPCETY
NAAIKRDVTLRRKLKVGALLPQLLTLCRSEAVTARPFAVSPEPDSRLVRRARAMSRAGLLELHHQSRNSIAFLLATTTEA
EPLDTVRVISKPCPRVQDEIRRRNVEDLPVTARLSKLTAAMETLGMPWKGWLIDMNSGKCPCPFSMKHGYCVHTLYAMEC
RGTMDLTGRQTLVNRGI
>Pi_gypsy  (gypsy) gypsy retroelement polyprotein [Phytophthora infestans]
MDLLTGESRGYWKYHAPGKWFRQAKVGGKINNEKAILLLDSGAEVSILDTAFARKVGCQVDGSRIQDCVGIGEGVYRTNG
RTRIKITLAGCLVYWFDIWVGDLAGQDAILGMDFMVPAGVRLDLADGTLCFPDEMRIQLSGRRPLYGAKMRIIRADKTTW
IEPGETWELSDRLKWVEHEKLWVTRGEKWVPTVIQGPGRSQYLQVTNVSDKRLLLDHYEEIGRWLAKDGIPRRPGYVSVG
SRRYREWQNLVYEATTEIESLGEVELPAEPTGPLVDRPSYPTPRKILQRDRRVEIQAMEVGSMTGDDPQSRPLDNAGSVD
EGLQRAKAEQPDPADPQVDPSFPLDKVPGSLSRVATLVKPEPSGLDSLEDRLDPTGDFPSTRIPDPTKTEGMTVEGESRC
LDPRVDQTKTEDEQVCYREGGDLHAEDLGEGMAVIPEVPLTTEEVTIDDIQVDPGANEPTEVDRLRQKIWESRHLLIGKG
NALPPAARGVKCDIDVGDAKPIAQRVRKVAPQFREKLSDLIKGLLQARIISFSTSPWASPVVIIIKKNGVDIRLCIDYRL
VNSLTRLMVYPMPLINELLEDLDKVLWYCSLDMASGFWVVTMTDRARAISAFITPFGLFEWTRMPFGLKNAPQIYQRLID
NALYGFTRIPEPETGGSGEGDAEVDPFEAGEPGDPGTPSVLGRRSYIDDILIPAESWDQLCERVTSLLEACTKWNLSISV
VKSYWGMRKVDYLGHRVSKEGLEANPKDLSSLADLSFPQSLRAMQSFLGSLNYYSRFIEDYALFAAVLYELREVDFAAMT
APAVRMKIQQALAREMSDPRRDPSGMTSEEDLTQELDPLRDQQREDPVWIETTDQNMEKAESRWIRAQHAFVELRNRIAT
TPILRHFDPERQPTVIVYASDWAVSAALVQEHEGICHPVTFVSRTLKPNELNYGAVEKEILALLRVLDLNYNLLVGRSIR
ILTRHSTLAWLFKSAGLQGRLGQWAALLSPWTLEIVKCSKGEDEILGVLAASITPRAKMDEALTKIAPKKEPKRRIQIPI
PTVQVDEDLYVLSFDGSARVRRGGGAYSAILWRLPGWEVVRARSTYAEGLTVNEAEYNGLLLGLDLLKGQDPKRLVICGD
SNLVIRQVRGEIDCKAPALTLLRQKVMIHLRGWLNHELVHVKRDWNASADSLASAALRNQCGVEVEGEAEHQDLVTLNRL
DEVVVVGSGKRTVQVMAVTRSRGRIGSSPPILEETFVKRVRIERILKAQNEEAWILGLKKYLMGDVRDLSREDAKSYSVI
ATDYAVDLNDLLFYCPPTKRVHEDRDGLMRLVMPETLQQDVLHHYHASLEGGHQGIGRTYQRIRECFHWRGLFKSVQRYV
GECVDCETGKGRPTIEGESPGNVRATYPFQIIAMDHIPSLPKSFKGNTELLIWVDLFTGYVIAKASASRTAQTIAESYEE
CVFRRFGASEMIRHDREPGFMSDFFRAFNRILGQRQRATMAYRPQANGSAERMVQTITRALKMYVQDLDQRDWDEYAERL
PFAMNTAQDRIRGDTPFYLVHGWDPKSTLEAAIPVCSTKKRNRDPRRWRYQVQKYYRQARSQVNERLRNAIQDRADRHNE
DARPHQIQVGSQVWLYLDRVKEGYARKLAHLWHGPFRVREKIGEHAVRLETAGTEYRLFPVVHVSKLKLVKEYPDRPQVR
LSVDASDRVDFDEVLLPEDSWNVDLEADEFEVEKITDMRSGKRTRYGRIYREFLVHWRGYDEPSWVDEADLNCGALLYDF
LRDRTNRNRFGVMQSHEEE
>Pi_model.supercont1.47.2.1 1410 novel transposase Pi-A IRs plus 9 bp TSD
MRHMFAHFPEVLMIDATHDTNSSNYKLFSFMIHDAMGKGQHVLLKHCLLLNERKETLRLACAQFKESCPSYESVAVVIVD
KDFTEISVLEEEFVGVRILLCHFHVVKYLQEEVAKEKYNLDVFTKKEMKRLIQLLVSAPSEQNYNNVISTMKVVLRTEAK
VRLWFDYLDRNWSNCKDKWSSIYRGNVPHMGNQTNNRLESSWQKLKTLVNRSLALDDCVVSIMFWQTVNERMWQRNVNKV
GVYFNTEYDAEMNSLSNTVSLHAVELVKQQYDFALLSTTQYRYYPTGPYIMLQYVAAKDDDIQEEYMMNPETWSCSCIFR
VTRLLPCRHIIYYRKATGCSILVPESIIHPRWLVKNYKKLKLERSVPVDFPYEDRKISREPKNRAKPQNEKFYELLSIGR
QIADIGASWG
>Pi_model.supercont1.27.2.1 1381 (hAT) hAT family transposase [Phytophthora infestans]
MHLAAAKVGLILEEEMGDAFGIIFDGWTHGSTHFVALLCVYMHGGTFRRRLLSISPVVEGSQTADVHIDHFQRVLDVYNK
TFAMVLFVVGDNCSTNRSIATKLEVPLVGCASHRLNLAVQLFLSRYEAELDQASTLMVQLRHPNNSAELAKFTKLRPVKR
NATRWSSTREMASRYIKIRGDIRKVEAVEEFLPSASAHRKIVARNEDLRVFDSVCKKLQDDETTMADTRLLFNSLLDRYP
DLVSHLDPSSKIVHSPTFENAVIKVTTGSLLTAAEAKSVSKFASDRPTVGDKRKRNRASDFASTVLLESSAARRTGRSSG
VYNALLTKIPSTSNACERLFSQTKLILTPQRGRLADANFEVLTFLRANLDMWNASTLVDTT
>Pi_model.supercont1.56.1.1 1381 (hAT) hAT family transposase [Phytophthora infestans]
MEGVTKVVETTIGRDMPSDFGLILDDCSFGTEQYLGVHACYETSSGPQYPLLSIAPVMDEPDDNLTAEGHLWAIDRFLPF
FGKTIQGVRFLVGDNCAVNKRLANLMEVPLVGCASHRLNLAVRDFLRPHEDILEEVQLLMRKLRTLNQAAKLRLKTPLVA
VLRQNTRWSSTFTMLDRYVRLREVLSADDDDIADLLPSRSSHRRLEDLLAKLRCVKSISKKLQSDTLTLLDARDLFDGLL
EERPSFRNYLSPYADIVHSPAFEAAVVKVLAGEAAMLTLEESAQLKPFKVPAPTREVVTSTGTDGFADSILKHRKIAAEQ
STYKLVSAIPPTSNKVERLFSVARGVLRHQRRRLSPMTLEMILFLNVNAIYRDVSTVEASL
>Pi_model.supercont1.25.15.1 1384 (hAT) hAT family transposase [Phytophthora infestans]
MEDLTKAVERSIGEEMPDEFGLMLDGWSHGTEHFLAVYACYDEPNGPCYPLSSIDSIMEEPDDQLFADGHLLAIERFFTL
FKKSIEGCKLLVGDNCSVNKRLANLMGVPLVGCASHRLNLAVRDYMAPHEPALEEVQQLMRKLRTLKQAAKLRLKTPLVP
IMRQDTRWASTFSMLKRYFRLREFPSADDDELASMLPSRTTHRQLEELLSKLRCVESVSKMIQSDGLTLLDARDLFDGLL
EIRPSMSKYLAPDAGIIHAQAFEAAVVKVLAKKTVELTAMEITVLEPFRQLEAAATSASPASPPDADGFARQILKRRKIS
AEHVRYKLLSAIPPTSNIVERLFSVARAVLRLERHRMSSLTLEMILFLKINASFWSVTTVDSCL
>Pi_model.supercont1.1.2.1 1381 (hAT) hAT family transposase [Phytophthora infestans]
MELITKAAEKNIGEELPECFGVILNDCTFGSEHYMAVYGCYKQNGVRRCPLLSMALVINGPDDSLNTEIHLAALVAFLPF
FGKRLANVKFFVGDNRAVNKRLARLMEIPLVSCASHWLNLAARNFLAPYEEELDQVQLLMKHLRTIKQAAKIRLKTSLKP
KLRQETRRWSTYSMLARYFELREFLSADDENIADVLPTPVAHLKLRALNDQLSDVESVLKKLHCDDLNLLDDRDLLDGLL
EIQPSFSSYLELNAGIVHSPDFESGGVKVLSGQVKRLSWGDRAALHPLKKPSKPSVPAPEPTKMGFADRILKRRKTQGTP
CEYELLDVNPPTSNIVERLFSSARMVLRNERNRLSSFTLEMILFLRVSDAYWDVTTVDTCF
>Pi_model.supercont1.513.2.1 1384 (hAT) hAT family transposase [Phytophthora infestans]
MEGVTLAVEAKIKDEMPNQLGLVIDGWSHDSEHFLAVFACYEVDGVAKCPLVSMAPLINEPDDDHGACTHEVFLATILER
DYGKQVSNCLFIAGDNCQVNKRLATSMGVPLIGCASHRLNLAVQAYLSTYEDDLAQIQALMRKMKTLNLSAALRFKTPLR
PILRQDTRWGSAYRMVERYFRLSEFLPEDDDEIADLLPTPRTLKRLKTLMVELSRVENVSKALQKDGITMLDVRVWFDGL
VEVEPSFSHYVDARADIVHSPEFEAGCVKVLNGGTAELNRAEKDILQPFERGSSADTSRMTNNFENEPFVMQLERKRKRA
QQVQAYHLLTSVPPTSNMVERFFSLARITFGHERHRLNPYTLEMILFLRVNTTYWDVRTVDSAI
>Pi_model.supercont1.23.1.1 1376 (hAT) hAT family transposase [Phytophthora infestans]
MSSVTRAVLPDLFGLIFDGWSHASEHYIAVYARYEVDGVVKTPLLCMAPLLNEEEEDLSARGHMEFLATMLPRDYGKQLG
HCCFLVGDNCSVNRRLATLMGVPLIGCASHRLNRAVQADMQDYEDELDAVQKLMIKLRNLKQSAKLRTITPLRPVIRQNT
RWSSTFAMVMRYFTLLEFIDSNDDDIADLLPSPSYNRRLRALLADLQKVESVAKALQGNEVSLLDARVWLDGLLSIKPHY
ARYIGPRAEIVHSPDFESGCVRVLGGNAARLTRAEKTVLTPFKSTGPPAVSEDEDDGDSSLVQLLQKRRRLAAKETKYKL
LHAIPATSNVVERVFSVARTTFGQERHGLQPITLEMILFLRENAGYWDAQTLDTAT
>Pi_DDE_transpos (DDE_transposase) transposase family core consensus [Phytophthora infestans] 
MEHNIVRATGKSKEIEKEVAHLGLRGFDGDENAIENIDETHFVVDFDNGKTLGFGGEEQVKYADVVSGGDGMTMVVRISG
GPSARILPPMMIFTNADGSYPIRGVKDDVEGVCYRTSPKGWMDKRLFREYLKEPRAQKPDRLGRKKTIFLDNCSGHLEED
ECTEELQALNANLAFFPANATDLCQPADSFVIAKIKDEWRRMWNEKKIELIEEEAWQNKRD
>Q9FZ78_ARATH/621-701 (hAT) hAT dimerisation domain, hATC (PF05699)
ELTQYLSESIVPMQTDVLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSW
I
>Q9LZN8_ARATH/575-662 (hAT) hAT dimerisation domain, hATC (PF05699)
ELVKYLKDELHVTTENSLGLPFDLLDWWKTNSSKYPIMSLMAREVLAIPVSSVASESAFSTGGRILDQYRSCLTPDMVEA
LVLTQDWL
>PITT_06784.is4  IS4-like transposase [Phytophthora infestans]
MYLYDRYEDTIYCHEAVVAERIRAFADAVHRTGSPMKNVFAFIDGTKNRICRPSSRRGRGANLQKQVYSGHKRTHCLNYQ
AVVAPDGLTLHFWGPIEGRRHDSTLLRESKFIEYMEERATILDGYALYGNPAYKIRKFLVSDFRETAPTDAEQLFNKLMS
SVREAVEWKFGSMKSLWAFIDFNKSLRLRLSPTGKYVLVSMLLTNCHCCYNGGNQISAFFGLAPPSLDAYLAK
>Q44566_ACEXY/98-268 transposon family T11 Pfam:PF01609
LVILSREQDGRDATPSDGIIDSQSVKTAENGGPRGYDAGKKIRGRKRHITTDTLGHVVAAVVHPADIQDRDGAPLVATRI
RSLFPWLRHLIGDGGYAGEKLRGALAELGRWTIEIVKRSDRAEGFVVLPKRWIVERSFAWLGRCRRLTKDVEATISSSHA
WLMIAHIRRVL
>Q9X5L9_RHIME/98-268 transposon family T11 Pfam:PF01609
LVMETRELEGKEASPTAGVIDSQSVKTTESGGIAGYDAGKKIKGRKRHIVVDTLGLMVGLVVHSADIQDRDGAVAALKTV
LRRWPWLRNIFADGGYAGPKLRASLRNVAKFTLQIVKRTDKAKGFEVLPRRWVVERTFAWLGRCRRLAKDWEKSIASAEA
WMLIAHIRILT
>Q8SA99_MAIZE/389-472 (hAT) hAT dimerisation domain, hATC (PF05699)
ELISYLDCDTVNQLTDDFNILHWWHQHKLTYPVLSIMAKDILIVPVSTIYSESTFSLTGRIIDERRRRLKSDVVEMLTCI
KDWE
>Pi_F45copiaPolyprot polyprotein Copia element [Phytophthora infestans]
MSSTQASTADDREFPRLNGRNFIIWKTRVTAALEGKNLLGYVERIDYTGDSDYEFDSDEELNPALSDMNDMSAALDAAGA
PKADEIVGSSPSESSSDASSASSDAPTAGDDGDVEMGQENPPVIQSFTAQKRDELKRAEKLKAKSQRLSSKKLRLNEAKA
KAFLIKTIDDQHVLMVKDKTTAFEIFQTICSKYEGAAIHGDPYHVLSYLMALRYEEGSDLTGFIIDIESAMKVASEATNS
VLSDEQKSLYLYHALPGKWKQQLSVWKGSRKFIPYEELKRHIEAKVQHELAKNRYTLKQGTPESRETRNEQALQALAPEP
TLVQAPYQESKALISTMSCTYCLRTNHDTVDCYVLQRHLQNGQVKAGTVLPANFKLKPSSNQARQHPYKDGFGGKSRXQN
RNDYKSKRNSNRNRSQNGNQKNTSXKSKSHNKFHGRRKDTDSDNEYGIIAITTLDLRQETEAVSLTAQDAEHDPVWTVDS
GCTRHVTSNPKWFEKLIPSAGKSITVGGNHQIPIKGTGDVKMTIKDTKGKEREISLANVLYAPQLKFNLLSVRQAVEDDF
KINFPNAKKCVLFFASRTKFEAKIGEGTRLYQFQASPATSSQVAHVATSGKPDNVLLWHKRMGHPNFRIMQDLAKANTVM
DMGLKDFDSKKDYFCSSCTYAKAHRNPFNKRTVERAKFPLEKVHSDMAGPLPVPTLSGCQYFLTFIDDYSRYMFIYIIKR
KSELYECYEDFRKKAQNVFRADVGELQFNENIHDEEVRHLQSDNAREYEKLGKMIFQKYNTHAQFTNAYTPQQNGVAERR
MRTLLXRTRAFLIDGNLPQVLWGECVKHVADLLNITPSSVTDKVTPYEKWFKRKPSAHYIKVFGCTAYAHIPEIHRTKLE
PRAKKCMYLGLPSNKKGYRLLDTKENRVIYSRDVVFREDEFPHLEFLNTPAISDQNGPAPTLSPSLPTPQLLPPIASLLK
RSVNALAAEVVVKMKKVKHKTNAQNEDEHSCLLDDPLDINERKEHLTHIYALLAIRHISEPKTFLESQKLPEAQHWEKAA
ICEYKSLIDNKTWVLTKLPTGRRALQCRWVFVVKYNGDGSIDRYKARLVIKGFLQKYGVDYDEIFSPVIRMEVLRLLLTI
AALLDLEIHQMDVKTAFLNGYLDEEIYMLQPEGFTVRGKEHLVCKLLKSLYGLKQAPRIWYLTLCSFLLTMKFHKLIKDQ
CVFIGVVDGATCYILVYVDDLLIIAPTLDIINNIKNALKQRFKMSDLGEAQYILGWSIVRNRTDRTIFIHQEKYATKVLD
RFSHLDAHPVGTPADPSVKLTEAMCPQTPEEKHEMKAIPYREAVGSFMYLMMGTRPDLAYFLREVSQFLVNPGKPHWNAV
KRGLKYLNGTRNLGITLGGKQNLEQYKSKHYLTAYSDADYANCPDTRRSVGGYIAYMCGSPISWQSRKHHTVVLSTTEAE
YIALCHCMQEVIFLKLLLVELKHESSHAITLFEDNQSCIKLSYNPELHGRSKHIDIRYHFVQEKVERKEFEIMYCNTKEM
VADIFTKALSKPLFINLRGSLCKTLIQK
>PITG_13244 (mutator-like) transposase IRs with 9bp TSD [Phytophthora infestans]
MDQFGQGQPVQYSLIETNGDWHMAKCLDHFKRANEHWRFVRIVIVDKDMREVEVVRKKLPEARVLYCHFHVIKWLHETIR
KSKSYGAYDEDVLAQMKHAITNMTYSRTEEDYHMHREEFKSLACRDDRTDLWEYFDKNWNDCCEMWVMAYRVDLPHFGNH
TNNRVESLFGKLKRHLKGHFTMRASLKVLLDFQRRKEEDYRSKVEMPGTLRDVSYSEEMNVALGMTTRWVAAAINAQYDV
ATDDAVANNYTFTDNGTTVTVSGGKREYLIEKEGYLCDCEFAQTMKLPCRHAMMYRKRCGNPFIIPFSTIAPRYVDFASR
WFGQSRLSQQELTEVAAPF
>PITG_05015 mutator-like transposase [Phytophthora infestans]
MPRHSWALLEEHATSADFVKLRASDFCCSGAYVKREMDCKICNADQAMIESRLECISPTCASKEDMNGGMQCGVQWKYWE
CTSRPAWRVYCNDKKHFRGEEQCAGQHRIPITDEVKEFITRMDSCGVRPRDIWSNLRRTTDVAPPPLGLPSRQQVSDCVK
RLRKKNLSRNTREAEFLFGPVDGVDGYPRIGKGSEEDPFVLGVTTANLLTKVKQLHGSEHFRLFHTDATFKLSDLGYPAV
SARAHREYEMAFDSVARVYKKLFQTTLRVDAILGDAEDAQLNALRAVAAFSDSKYLMCLFHVLYNAHKRTMHLETGPGVA
VFTGIMDMHYATSYTEYCAVKDRVISSWRWQIFHSPSSYATTNNPCEVFNATVKRHVHRKTSEVCALLQSMIGLAEDVGS
DVPSPTTSIATPNGEIKKAAKWMLKTKAVLVARTNDETRVQVMHILEVHIDATAMETMRRLANNLASRLYRDSVKWSTRR
AHRVNMPQDGWLVDAENNKCGCAIHLKFGVCSHVVVARSASA
>Q9P313_CRYPA/844-927 (hAT) hAT dimerisation domain, hATC (PF05699)
ELEKYLQLEEDDEDDDGFEPLVWWAARKAEFPALSQMAFDVLSIPAMSSECERVFSQGKLTMSSQRRRMKSSTLELLLCL
KDWL
>O82185_ARATH/59-150 (hAT) hAT dimerisation domain, hATC (PF05699)
LASDLFYELKILREALPKEVRRPIEVLDFLQKVEGCYPNSWIAYQVLLTIPVSVASAERSFSKLKLIKSYLRSSMSQERL
SDLAILSIERAL
>F23H14-4-4 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDDRGLNRVTVKNKYPLPRIDELLDQLWGGTCFSKIDLTSGYHQIPIAEA
DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLF
AKLSKCSFWQREMGFLGHIV
>K11J14 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LLSGTVLNSSSPYASPVVLVKKKHGTWRLCVNYRELNGMTMKDRFPIPLIEDLMDELGGAVVFSKIDLRAGYHQVRMATE
DIHKPTFKTHSGHYEYLVMPFGLTNAPATFQGLMNAIFKPFLRKFVLFFFDDILIYSSSMEEHVQHLQQVFEVMRSNKLF
AZLSKCAFAVSKVEYLGHFI
>gi|12324112|gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 [Arabidopsis thaliana] (CACTA-element)
MLDKTWVQLCRADPNYERGARSFVRDVVAALGDIDMIICPCKECRNVYQQSSSDVVVHLVTKGMDEAYKLQSEWYHHGDS
VASAEGVSTTNQRNDEILELYKAAEYFDEELASKRDLVETPLGDLAEIAEDEDRREDEFLAKLADAEPPLYPSCLNHIKL
SAIVSLFRIKTRNGWSDKSFNELLETLPNMLPKDNVLHTSLYDVKKFLKSFDMGYEKIHACVNDCCLFRKKYKKLDNCPK
CKASRWKINTHSGVVKKGVPQKVLRYFPIILRLKRMFRTAEMAKDLRWHFTNKSSDGKLRHPVDSVTWDKMNYSCWPVLL
VNYNLPPDLCMKKENIMFTLLIPGPQQPGNSIDVYLEPLIEDLNHLWKKGEAMLLWTISDLPAYGNLVGYKAWFDGKSEH
GRKGRILTGHEVSQNLRNFKNDFGNVKGSGRKRKRTVLLSDSDYSSSESEEEEEVEVDEDELSRWKKRSILFKLPYWEKN
VASSIVSTLLHCGKSKDGLNARKDLQNLGIRKDLHPTTQGKRTYLPATPWSLSKKEKKTFCKRLHDFKGPDGYCSNIARG
VSLDDCKITGLKSHDYHVLMQQLLPVALLVMETKIVETLCMFERFFPPSFFDIMIHLTVHLGREARLGGPVHFRWMYMKF
LKDFVRNPARPEGCIAESYLEEECVQFCGDFLKNTTNVEEKVDRNTEYENSSILEGRPISAGTSITLSEMDKNIAHLAVI
QNMAALDQYVDMHLQHLQDSNPRCRRDASHLWSMHAKNYASWLKEQIPLGSTEHEDIIKWIAYGPRCSARSFTGYIVNGH
RFHTSSLQRQSQNSGIYYESTAMCRSSAKDNSQVVDLVSYYGRVIDIILLDYNVFYVPIFRCQWAVRGNRVKVEDGFTLK
MMHQAGM
>gi|10177991|dbj|BAB11364.1| (helitron ORF)  [Arabidopsis thaliana]
MSKRKKILETQFSDLSNVIQNTTNKQFRHEETSENTPPSFNGPSVKNSVPMQNDSQYPFRNHRPNSNLSSSFTTTNLEQG
ETSNPSKDKRLFRNFTNDIPIKINDITHCRRGDRTDDPILPEFLQSGNQMNLRECDSNGETYGSESDIYDDLENGFQDEV
DYDSYTNYKQKGVKITELVKKNYEFLDDLEKSLLATFGLGCRTSNENIEEHSYGKEHEDFERQFNMNSRKNKTVYIDHGD
PIYACEYCGAIMWHGERIEKTVKNKKSKFTSCCLQGQVKLPFLKNSPELLYALPTNDDEISRHFRENIRAYNMIFYFTSL
GGDTENSVRASGGPQMFQIHRENYHRIGSLKPDNDIPPKFMQLYIVDTENEVDNRSEALSNGVNADKYKKKELRKEIIDA
VIKLLNSINPYVSHLRTARDRFNANPEETLHMRIVSKREKDGRVYNVPTTSEVAMLIPGDFTIDMPSRDIVVQEKSGKLQ
RISEILPCYLPLQYPLLFPYGEDGFRIGIEKHQTGSGKKTKNKCISIRQWFAFRIHKRKHEKHILLRSRRLWQQFLVDSY
TAIESNWLGYIKLNQTSLRAYNYNSVQKASEEGKSDLKDQGLACYLPATFTGGPRYMRNMYLDAMALCKHFGFPDYFITF
TCNPKWPELIRFCAMYTIEFQKRGLPHAHILIWLDSKSKLTKAEHIDKVISAEIPDKLKDPELFEVIKESMVHGPCGFPI
YRRRRTDDFVEKKDFKCDNRYVIPYNRSLSLRYRAHINVEWCNQSGSVKYIFKYIHKGPDRVTVVVESSLNSKNKENGKQ
KDNADTDGSETKKKNEVEDYFNCRRIETVLNRSDLDGSMFLAWFELNKVSKIARKLTYADIPTRFTYDSKEKKFNLRKKG
FAIGRINYVPRDIEDGYYLRILLNVQPGPRCFEELRTVNDVLYKEWKDACEALGLLDNDQEYIDDLKRTSFWSSGGYLRQ
LFVIMLDALISPENVWAATWQHLSEDIQNNKRKYFNRPDLILSDEEKKLYALQEIDHILRRNGTSLTYYKTMPQVPRDPR
FDTNVLILDEKGYDRDNLTEKHAKWIKMLTPEQKSIYDDIIGAVNENVGVVVFVYGFGGTGKTFLSKTLSVALRSKGDIV
LNVSSSGIASLLLEGGRTAHSRFGIPLNPNEFTTCNMKVGSDRANLVKEASLIIWDEAPMMSRYCFESLDRSLSDICGNG
DNKPFGGKVVVFGGDFRQVLPVIPGADRADRVMSALNSSYLWSHCLSVSEAKDIKEFSEWILAVGDGRIVEPNDGEALIV
IPSEFLITKAKDPIEAICTEIYGDITKIHEQNDPIFFQEKAILCPTNEDVNQINETMLDNLQGEEFTFLSSDSLDPADIG
GKNNPALTPDFLNSVKVSRLPNHKLRLKIGCPVMLLRNIDPIGGLMNGTRLRITQMGPFILQAMILTGDRAGHLVLIPRL
KLAPSDTKLPFRMRRTQLPLAVCFAMTINKSQGQSLKRVGIFLLRPCFSHGQLYVAISRVTSKTRLKIRLWMMKVSHKSK
QKM
>gi|124360062|gb|ABN08078.1| (helitron ORF) Protein of unknown function DUF889, eukaryote [Medicago truncatula]
MSRLSDIVGLDEFIGQNPIISFAEFLSSMDDGLFIVVACYFSVDEGVDKWIDLHSSTPEPRFRLSLNVGDFDNEASFIMR
DDVVRQLAPSTYKLLVDTPEASSLYPVELDLLFAEPMIFEVLKKPNGSPSGPVSYDVLRLFTHDRLLDVFYGPKNYSPVF
IIQYKHFCCVDCNVMMELRERSRRDSSTLSHDVSMCCMKGKITLPYMIEPPPLLRQLFNGLHPRSGHFLANIRSYNNLFS
FTSMGGKIETEINRGQGPPHFVISGQNYHRIGCLLPADGERPKFCQLYIYDTENELANRMAHFSGRSDESNLDSSLIEEL
LSLMDEHNKLVKSFRMVRDFCVQNDNVPVRLRLFRNRNFDARTYNVPDVDEIAALIVGDFEDSEDGRDIVVKEKGGFLQR
IHETHSKYIPLQYPLLFPFGEDQYQEHIERNELTSTGSVKKRIRISVREFVAYRLQERTIEDSVLFSGKRLFQQFIVDMY
SMIESQRLSWVRQNQSKIRSGFLKGLEEAVGRGDIDASSIGSRVVLPASFTGGRRYMFNNYQDAQALCKRYGYPDLFLTI
TCNPKWEEIQRHLSRSGNYASYRPDICCRVFHLKLQEMMADFRKGQYFGKVMASVYTIEFQKRGLPHAHILLWLDKKDKL
DSISSIDSVISAKLPDHRLYPKLYAAVTGFMVHGPCGFARPYSPCMKDRRCSKFYPKKFVSRTSFDESGYPIYRRRDLGI
VVMKKDVQLDNRSVVPYNPTLIMKYQAHVNIELCNRSNCIKYLFKYITKGVDRVTASVETGGQGDVDEIQQYYDCRYLSP
CESIWRIFAFEIHSRWPPVQRLTFHLHDGQRVIFDDEADLEDVLAFNKERNTMFLAWMDANKEFPSGRSLTYTQYPGMFV
FDDRKRSWHPRRRGVSVGRLTFVPPSNRELYYLRLLLNRQTGCTSFEDIRTVEGIVYDTCREACAALGLLADDRQFIDAI
NEVALDSSGHFVRKIFANLLLSSSLGDPFAAWQLTWEALADGILYDRRRFLNSPDLIISDEDLKQLCLVEIDKLLRLNGK
TLDDFESMPKLLSTVVYAFDNVLLANELGYDQDEMSMRHAEFFSRLNDGQLSAYNQIVDSVDNGLGRMFFVYGYGGTGKT
YLWNALSFRFRSEGKIVINVASSGIASLLLPGGKTAHSQFAIPLVVLEDSCCLIEKDGKKAQLLTMASLIIWDEAPMINR
LAFEAFDRTLRDVMNNIVDGALDIPFGGKTIVFGGDFRQILPVVPKGNRADVVHATINSSPLWSHCTVLRLTQNMRLQSS
ADAEQTDMLRQFADWILSIGDGKIGEARDGEFVVDIPHDLLLENSGDPINDIVRSTYPNLVNNLSHENFFHDRAILVPTL
ELVEKVNDYIMVMLPGDEKEYLSCDSVCKCDDDIGVDHRWITTEFLNDIKCSGMPNHRLILKVGVPVMLLRNVDQSAGLC
NGTRLTVISLGKNVICARIIGGLHDGEVAYIPRMNLIPSGANVSITFERRQFPLVVSFAMTINKSQGQTLSHVGLYLPRP
VFTHGQLYVAVSRVTSRGGLKILITDENGQGSSSTVNVVYEEVFQRI
>F16J10/T20G20/T3P4 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LASGTIQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGSNVYSKIDLRAGYHQVRMDPL
DIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMNSFFKPFLRKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLF
AKMSKCAFAVPRVEYLGHFI
>T13H18/F3K12/F14P14-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRRLNRITVKNKYPLPGINELLDQLRGATCFSKIDLTSGYHQIPIAEA
DVRKTAFRMRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLF
AKLSKCSFWQREMGF
>F7F23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKRFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRELNRVTVKNKYPLPRIDELLDQLRGATCFSKIDFTSGYHQIPIAEA
DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREZKLF
AKLSKCSFWQREMGFLGLIV
>T13H18/F3K12/F14P14-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LSSGIIRPTNSPFSSPVLLVKKKDDSCRFCVDYRALNKVTIPDKFLIPVINQLLDELHGSVIYSKLDLRSGYHQIRMKLA
DIEKTAFRTLEGHYEFLVMPFGLTNAPATFQGLMNKIFKPYLRKFVLVFFDDILVFSDSVEAHVEHLKLVLQLLEEHQLF
ANMKKCSLGVSSVEYLGHIV
>T14K23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEKGFIRMSSSPWZDPVLFVKKKDGSMRLCIDYRGINNITIKDKYSLPRIDELLDQLRGASWFSKIDLASGYHQILIAEG
DITKTAFQTRYGQYEFVVMPFGLTSAPTAFMRLMNEVLHDYLDKFVIIFIDDILVYSRSQEEHHYHLQKVLERLREQRLF
AKFSKCKFWQREIGFLGHRV
>F28J9-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFLRPSTSPWGAPMLYVKKKDGSFRLCIDYRGLNRVTMKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQFPIAEA
DVRNTAFRTRYGPFEFVVMPFGLTNAPTAFMRLMNSVFZEFLDEFVIIFIDDILMYSKSPEEHGVHLRRVMEKLREZKLF
AKLSKCSFWQREMGFLGHIV
>gi|116507673|gb|EAU90568.1| (helitron ORF)  CC1G_00952 [Coprinopsis cinerea okayama7#130]
MSTSEHPWVIRGVSSPPMQWGAVRNGRRHECPYCKVILLTGEIPGFCCGTRGSRLQDVPPLPPLPDEFNIFLNHPQISKV
SRALNLIFSFASLETTHDFPSYSGSAMFAIQGKVYHRIRPMHPSSAMRWLLHDGFMMSSMPRRDLAEDLPLMWLQTIRDA
LQRVNPFVQYVRMVHDMAEHAPQASLVVNETGPSSEIAALISLHNTAVSDVSGRRLVISRQNNSNYRIANVSRLWEPLSY
PLLFPHATLGWGLFGSVTDANGAAVLNGDIDREATTTQMWHYRARLLREERFSIFGRLTCEYLVDMHTRDLESRLAFIQR
SLEDRRTREDAQLMGEEEVEPNENIYLPASFLGSRKWASEQVSDSLAIAAALGTPTFFVTMTCNPEWPEIQSQLRPGQDY
SDVPLVVVRVFKQKVRQLLKALKTMFPNAGSPIYTIQCVEFQKRGLPHIHILIKYRRDCSTPQHIDSVVSAELPNDPVDR
ELIQKFMMHNHPPENRPPSTYCQREQADGSRKCRFNYPFPITPTTTISPEGRVFYRRRSAQDCMVVPHCLPLIRMMKCHI
NFEIASTSHLFQYLFKYIHKGPDRARYRILDDNNPEVINEIEDFWNARYLSAGEAAWRILGFRITQKDPSVTALPVHDQD
NIRNQRYSRRSDEGSLSKLERYFLRPDGTFLYEGQTRNFDDLTYTEYFTLFRIDPYNPEKDGHPRYYRERPNGLDAPRMH
VILRAGSITHLARIQNVRQTQGQTFYLRAILTQRAARSYEDVRTVNGVQFRTYQEAAIAMGIFTDDDEAIFAIAEAIAAL
RTPREIRVLFVHLLVNDCVPAPLLVWDEFWESLAYDFTLRNNGNIDLGRNEALQEMGHYLGERWSGREQELNAQAEASRR
LFNDEQSQVYETIMEAIEMKIPLSLFVDGKAGTGKTTVIRALCNKLRAQGRVVLPTASSAFAAQLYDGGRTTHSTFKVPV
NEKNEMLQSPIRSTDARAELIREASLIIWDEAPMANRAVLSCVDDVLRDVMGTDIPFGGKVIVLLGDFRQTCPVVRGGSR
AEVVAASIKSSPLWRYFTIARLIHPIRNAEDPEFATFVNAIGDGGGPDIPLTGLRTVTEESDLTSFVFPDEILLHPTNCV
KRAILAPTNRQVDRYNTLILNRLPGHNKTYYAADKLKEVEDAEVPAPEAVLDYVMRHTPPGLPPHAVGLVKNARVLVKGV
GTRLITVQIDNIRSEFVFRTYTVSTAVPVSSSVRDDIQ
>Pi_model.supercont1.19.7.1 1378 (hAT) hAT family transposase [Phytophthora infestans]
MRHVAGKVGTRIAADMGNLFGLMFDGWTSGTYHFIAIYGVFTKDGALHEVLLGLSSAEHGQTADAHIDMIDAVLDVYKKD
RSMALFMIADNCPTNQAVATRMGVPLVGCASHRFNLAVGRYLEDYKPLIDQVQMLCIQLRHANNAADLARFTKYKPLKAN
ATRWSSTYQMLARYVEIRDAIKMVTAVEDLLPRPSTHRQIVQLVTKLEALDSVCVKLQAEEGNLADVRLLFDAVISKNPG
TAHHLSASARIVHSPAFENAVVKLLSDRPLSADEEEAVARFAGPADREPAAPNTKKKTNFATETLRQAKRPRRTAGTKYI
DVLQKVPPTSNRCERLFSQCKLVLNPLRSSLLPANFEMLVFLRANRELWDLTSLLGFH
>gi|38639775|ref|NP_943544.1| (TyrRecombinase_Crypton) putative recombinase [Klebsiella pneumoniae]
MTDKTKLVAISRTDDMSALDALKLLRFRRYNTARSQLRVTSVWSAWCARHGLTPFPVTAVDVERYINGLNGSVKMATISH
FIACLSSVNSSLGFPDFRNVLIKALVQVWRARENEKKIVTGQALPFLISDLNILRRSLHKSDDLRDIRDLAMIWVGFETL
LRNVEIRRIKTGDLKWQNDTSCYLLDVMRTKTSLSSNLTFQLSPQCSQHIRRLIETVEYTDTETFGHRFLFQPVNIHTNR
YFPSTSSKLSRGKSIDRMLVKAGFSEGLLTQLQNESKVSREDVGMLSSNSLNQAFARLWGIAGKVSDSNRQSGRYRTWTG
HSVRVGGAIELFKAGYSLEKITEMGNWSDPKMVFRYIRGYLASEKAMVSFMRNHLDDI
>Pi_model.supercont1.59.2.1 1371 (hAT) hAT family transposase [Phytophthora infestans]
MRHVALAVGAIIAKEMGTSFALMFDGWTSHSLHFLGIYAIYVYNGVRHQRLLALSPMEDGQTAEAHLDHISTVLSVYEKN
LQMVRYVVGDNCATNQSMATRMGVPLIGCASHRFNLAVNRFLQDYQTQIDLIQNLMIQLRHVKNATALAKATNYKPVKAN
TTRWSSTFQMIDRYCKIRDTILTVEAVEEFVPRGHAHRRVRGVLDKLRELDSVCVKIQAESCTLAEVRLLFDACAAKYPV
MANYLAPTAEIVHSPHFESAIVKLQNDLPLSADELHAVDSFILSPSTAQEEVPTAADFATSILRQAKKPRLASQASVEYD
PLLLCAPPTSNTCERLFSECKLVFTSLRSSTLPANFETVMFCDGVTQHLAL
>Pi_model.supercont1.67.2.1 1381 (hAT) hAT family transposase [Phytophthora infestans]
MGLVVKALENYISGILPKKFGIVWDGCSFRSEHYVAVFGVFGHDSKMEKILLAMAPLVDDDIVDPSAPAHISFFQAVLGY
FGRTLADVLYIVADNCPTNGSNAAIMKAAFVGCASHRLNLAVVEYMESYEDLLDKVQLLMRKLRGLNASASLRKNKLRPV
LRQTTRWSSTFNMVRRYFYLKDAINAMDDATTALMPSRREENQLRGLLEELKAFESSSKKLQSADGLSLLDVVDIFDALI
EEHPGVEGYLGSDAGIVQQPEFKDACVTVLTGKADNLTESQRSLLLPFASHVATPQLSEGKKVGFADRALKKRKLQRETP
CENPEIAVIPPTSNMCERFFSQTKHVMGNHRQGLLPINLEIILFLKVNRHLWNVKTVADVV
>Pi_model.supercont1.7.8.1 1388 (hAT) hAT family transposase [Phytophthora infestans]
MTLLTREVETVIANILSKSFGIIFDGWTFRSEHFVAIFASFRHDGQTENVLLVMAPLVDDDVDDHTAPAHVSFIGAILKF
FNRSIDNIAYIVGDNCSVTCKIAEELNVPLVGRASHRLNLAVNLMLAEHDNLLDQVQAIMIKLKNPLIVAAHYRVATLRP
VLRQATHWSSAFAMVHRYVELKEVMDKIDDDKITSMLLSRRDEKALVGVLESLKKFEPTLKQLQQADSVTLLDVRDLFDA
LIKLAPDVKKYLAPDASTVKSPAFEEACVQALLGNEAAIPEESSDVLDKLVSGGTRPTDKEPPVKAARDDFAKDTLVEAR
RQWEKVPRFKDHVVCIAQTSNLVERFFSQTKAVLGIYRQSMTLLHLESILFLKVNRTYWSAATVRKVV
>gi|163708623|ref|ZP_02125433.1| (TyrRecombinase_Crypton) phage integrase family protein [Methylobacterium nodulans ORS 2060]
MLHRAAGLPNPCTDERVRLAVKRMSRAKGRRQKQAEPLNRPSIDRMLAVKTPERLHRRVAEGDREVPLIALRNAALMAVA
YDTLLRRSELVSLLIEDLERVEDGSGTILVRRTKTDQEGEGAVKYLAPDTVGHVSAWLEAAGLTSGPLFRPVTKGGRVGA
AALGDAEVYRLYREIALAAGVKLARPPSGHSTRVGATQDMFAAGFELLEVMQAGSWKTPAMPARYGERLRAQRGAARKLA
TLQNRA
>gi|149754928|ref|XP_001493536.1| (piggyBac) piggyBac transposase [Equus caballus]
NPVELFELFFDDETFNLIVNETNNYASQKNVNLKVTVQEMRCVFGVLLLSGFVRRPRRGMYWEISDADQNLVRDAIRRDR
FELIFSCLHFADNSHLDQKDKFTKLRPLIKQMNKNFLLYAPLEEYYYFDKTMCECFDSDQFLKGKPIRIGYKIWCGTTTQ
GYVVWFEPYQEESTVMADRDLDLGLGGNLVMNFADVLLERGQYPYHLCFDSFFTSVKLVSALKKKGVRATGTIRENRTEK
CPLMNTEHMKKMMKGYFDFRVEENDEIILCRWHGDGIISLCSNAVGIEPVNEISCLDDEESPQISQPSIVKLYDECREGV
AKMDQIISKYKVRIRSKKWYSILVSYMIDVAMNNAWQLHRACNPGASLDLFDFWRYVAHFYLE
>gi|86279163|gb|ABC88677.1| (piggyBac) piggyBac transposase [Trichoplusia ni]
DPLLCFKLFFTDEIISEIVKWTNAEISLKRRESMTGATFRDTNEDEIYAFFGILVMTAVRKDNHMSTDDLFDRSLSMVYV
SVMSRDRFDFLIRCLRMDDKSIRPTLRENDVFTPVRKIWDLFIHQCIQNYTPGAHLTIDEQLLGFRGRCPFRMYIPNKPS
KYGIKILMMCDSGTKYMINGMPYLGRGTQTNGVPLGEYYVKELSKPVHGSCRNITCDNWFTSIPLAKNLLQEPYKLTIVG
TVRSNKREIPEVLKNSRSRPVGTSMFCFDGPLTLVSYKPKPAKMVYLLSSCDEDASINESTGKPQMVMYYNQTKGGVDTL
DQMCSVMTCSRKTNKWPMALLYGMINIACINSFIIYSHNVSSKGEKVQSRKKFMRNLYMSLTS
>gi|152113096|sp|Q96DM1.2|PGBD4_HUMAN (piggyBac) PiggyBac transposable element-derived protein 4 [Homo sapiens]
DPLQYFELFFTEELVSKITRETNAQAALLASKPPGPKGFSRMDKWKDTDNDELKVFFAVMLLQGIVQKPELEMFWSTRPL
LDTPYLRQIMTGERFLLLFRCLHFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTVYTPNRNIAVDESLMLFKGPLAM
KQYLPTKRVRFGLKLYVLCESQSGYVWNALVHTGPGMNLKDSADGLKSRIVLTLVNDLLGQGYCVFLDNFNISPMLFREL
HQNRTDAVGTARLNRKQIPNDLKKRIAKGTTVARFCGELMALKWCDGKEVTMLSTFHNDTVIEVNNRNGKKTKRPRVIVD
YNENMGAVDSADQMLTSYPSERKRHKVWYKKFFHHLLHITVLNSYILFKEDNPEHTMSHINFRLALIERMLE
>gi|90414748|ref|ZP_01222718.1| (TyrRecombinase_Crypton) hypothetical protein P3TCK_08793 [Photobacterium profundum 3TCK]
MTKGIQAIKDTKQLKSSRSEFSVIMDSIELWQSLTHQKYAKNTLLAFKNDWNNFILYCESHKRTVLPASVDTVHGFIELM
AKKRKLASLKRYIVTIGLVHRCHALPDPCAHTEIRLVMRKQRIDKHDDYNNARAFRDDHLQQLLTLFETSPKVKDIRDMA
IWSVAFEAMLKRSELSDLTVDKLETDSKGLIYITLGDRVIPLSAIASNALQRWITIGIIDTGYIYRRIDRHSNIGVLPLD
HSSIYRVFRRASEELGLPANVIFSGQSPRVGAAKDLSDAGLSISEIQSHGRWKSPAMPAQYVGNTEKRDQEMAKFLKDKP
WES
>gi|31240001|ref|XP_320414.1| (piggyBac) piggyBac-derived 2 (AGAP012114-PA) [Anopheles gambiae str. PEST]
TPYEIFSLILDDKLVAHIALAMNLYMEKKNAQKSKASKWLETNPKEVRKFIGLMIWMDLVRVGRLEDYWSESALYNFAVP
RAAMYRERFRALLGAFCFYDDGTSKTDYKEPGKIGAFIDVLQSKFQALLHLGEDVVVREMLALGRDRTSFKQYIPASAHR
HGRWALFKLCSLEGYTWGLKLCTEQRLIGEAQLANSVCMELCEPLLNQGRTVYIDNFHASFDLAQALLANQTHLVGTVRV
NGSSMPKDVLLAKLRKGEIIARENDDGVMVLKWKGTCTMGLLSTKHSPALVPMESQVRSNRRWIRVARIQPEAVIAHIQA
KGRPDRSDAIGPHITDLRKGMKWYKQVGLVLLLQVCVTNAWILHRMVTKKKLKLATFREQLVDQLVP
>GB:BAA20418 RNP particle component (LINE-element) [Mus musculus]
TESTITTNSRDYQMAKGKRRNLTNRNQDHSPSPEPSTPTSPSPGNPNTPENLDLDLKAYLMMMVEDIKKDFNKSLKEIQE
NTAKELQVLKEKQENTIKQVEVLTEKEEKTYKQVMEMNKTILDLKREVDTIKKTQSEATLEIETLGKKSGTIDLSISNRI
QEMEERISGAEDSIENIGTTIKENGKCKKILTQNIQEIQDTIRRPNVRIIGVDENEDFQLKGPANIFNKIIEENFPNLKN
EMHMNIQEAYRTPNRLDQKRNSSRHIIIRTSNALNKDRILKAVREKGQVTYKGKPIRITPDFSPETMKARRAWTDVIQTL
REHKLQPRLLYPAKLSIIIEGETKVFHDKTKFTHYLSTNPALQRIITEKNQYKNGNNALEKTRR
>BEL-5_CSa#LTR/Pao 59-5874 via tfasty with BEL1_Cis, 2 frameshifts. [Ciona savignyi]
MASDNLKQFEVVEANLRKKYILAECLMIDPGSASELKKLVSVIDNLYQRLLSLASEAFTPEELNSEGHQPLKGIVQCKVE
FDTRIGDWFQINDALSDKSAISPKSPDRLYTISDSASSLRSSRSSVKRREAYVRAQKARLEVLQVDQREKEKVAAAQEAA
ERKAEEARRESRRNAEMADLELRAWNEQCTNEQSPNLLTMPNSSHEQTDTVGNPNITDNRKHISTRILNETSKNVLPVPF
STFDKLSVNCNRFESISQPNPAQQEYKPEARASPRYDGKNRVQRTVSPERHEQIHYWGDRTLPPRPELMKFNGDPLDYHE
FIRNFETHVMAHVRSDSARLTYLLQQCEPDVRRQLSHFSKDPVGGYNLAREQLWQLYGRPHIISAACAKLLSKTPEVGER
DPSGLLKLNILLQRCRSALADVGEYAGFNSLHCLLPILQKLPDNLQAKWIEWSVIVFEENKREAGFLDLVTFVSRHSSIW
NSLYGESLYRRADNVKMGSRGGRKLRVATCSTVSETKPHVLPNSRGEMCILCFKRHSLPQCNTFRSKRTRERREYALNKG
LCFRCLCHGHRVIDCSSTEECGECGSPYHHTMLHAGITNDKKVTNNVTPIKHTMSCSSMLSEKLGNDEAFEPQDIYLCVV
PVKVRFQGREVCTYAFLDTGSTATFCSQTLVNALGLTGVRKQIQMTTLCNQSSYNGMITNFTVCSLDANTEIHLRNVVSV
DQIPVQPNVIPDKKKINDMSHLKGLEFPHVAGGTVTLLIGIDVPEALCVERILKGKRDEPVAWKTPLGWSLMGPSCVSPR
STTIYNNLAAITTDRLSRQINRLWEMDFGDATAVLENPTSREDRVAHDMMKRSIVQVDGHFQLALPRKPGAPDLPDNRAM
AEKRIEGLKRRLQKDDDLRKRYLASMPTYIDNDYAREVTTNELNAFNYRWFIPHHPVMHPRKPGKVRIVFDCAAKHKGLA
LNDILLQGPDLMNSLVGVLMRFRIHQVALVADVEAMFHQVRVEPKDRKTLSFLWWKDGNLESRPLVHEMLVHLFGATSSP
SCAAFCLRQTAIEFGHLYDDVVSEVVTNNFYVDDCLVSARDVNEAVRLVAQLRDLLSRAGFRLTKWLTNNQQVLDSIPEQ
DRAKNVKTMKIDDCVDERVLGVQWLVSCDKFTYTVVKKKSPVTKRGILSVVSSIYDPLGFAAPVLIKGRLLWQKLCKRGL
DWDEPVLQSEADEWKSWLDVLPGLEDVRISRCFRPPEFGNVAITELHHFADASTAAYSAVSYLRSTDDNGNVHCAFLFGK
ARVAPTSTMSVPRLELTAAVLAVRNDQVARRELKLSDCQSTFWTDSTAVLQTLFNSTKRFPTFVANRIAEIERHTDIKRW
KHVPTQLNPADDATRGLDPDALSGRWLNGPQFLWSTEDTWPKCPVTLPEVPDEFLPVKRQDISVNLLIPGQTAMNQTEPA
VDRLINYYSSWYRLKKAAAWLLRYKEYLRQRVNQDREAVSSRPLTVEEMKFAGLQLIKYEQRKHFGPIIASLMTGQQAKK
NECTRALLRLNPFLKENLLRVGGRIERATVEYDIKHPIILPCHSNITELVITEHHELVGHSGSGHTISSLRRTYWILKIG
VAVRRVLTRCLPCERRRTTPSSQMMADLPACRLQSDKPAFSSVGIDYFGPFYVKQGRSQIKRYGCLFTCLTMRAVHLEVA
CDLSTDSFLNALRRFTGRRGKPEHIYSDNGTNFVGAAKILRSSIKKWNHQHIAEHLRQKEISWSFNPPAASHMGGAWERI
IRSVRRVLSSLQSPKTVLTDETLQTLFVEVESILNSRPLVPVTIDVRNDEVLTPNHLLILRGSPNQAPGLFDDKDCYARR
RWAHVQHLANVFWKRWLSDFLPHLIERQKWVQKRSNIQNDDIVLLVDESQPRAKWTLGRVVDTYADKHGAVRTVSVKTKN
GVFKRPIAKLCLIAQKMP
>BEL-4_XT#LTR/Pao 208-6048  [Xenopus (silurana) tropicalis]
MSQKQAPSLITRSQVSGSSQRSSVINAAAIARAKAEAAKARVSFAEREMEAKMEKARLEASLEKLAIEREAAAAIAEAEA
LETIIYPDSERHSRAPDLEIEGQDPLQRTSEYVQQHSKQNTDSLSAQEPGQHATREPDQQRFMTQEVSGNPHVHQRDNTE
QSDPAYGTHIIQVPKLTGNPTTTSSAPLRRYVTNRPKEEPPDRYDYTTPSHYNTHPPTYPGANQATMDFAKFFARRELIT
KGLVKFNDRPEGFRAWRSSFQNTIRDLDLSYSEEIDLLIKYLGTESAEHAKRIRVININHPETGLKMIWHRLNECYGSAE
VVENALFKRIDDFPKISNKGYQKLRELSDLLMELQVAKAEGDLPGLAFLDTARGVNPIVQKLPYNLQERWMAHGSKFKQT
YNVIFPPFTVFVDFVYQQAKMRNDPSFDLTLPHATPSVPNTRKAVTVHKTNVSSSGSFHRSADSSQEETNNKDPGKQCPL
HQRPHPLLKCRAFRGKSIDDRKAFLKENHICYKCCSSTSHLARDCKVSVKCTECDSTHHNTALHPGPAPWTLPHNKGASE
HGGEEGDTAITTPEVTSQCTEVCKGAIGGRSCSKICLVKVYPKGQRDKAIRLYAIMDDQSNGSLACPAFFDLFNIKGPSI
PYSLKTCAGVIETAGRKASGYQVESIDGQICLPLPPITECSRIPDNRTEIPTPDAALHHAHLKCITHLIPELDPKAQIML
LLGRDILRVHKARDQINGPHNAPYAQKLDLGWVIIGDVCLGDVHRPTNINTLYTNTLENGRPSLFQPCPNRFLIKEIQNN
TYLTNLLGESYPCAKDDDHLGCNVFQRSKNDNQLSLSIEDKIFLEIMDQGMCKDNANSWVAPLPFKPHRRSLPNNREEAL
KRFTSLTRTFQRKPEMREHFFTFMGKIFENGHAETAPSITRKEECWYLPIFGVYHPKKPGQIRVVFDSSSKYDGVSLNDV
LLTGPDLNNKLLGVLIRFRKDPIAFIADIQQMFHSFLVREDHRNFLRFFWFRDNDPAKDVLEFRMKVHVFGNSPSPAVAI
YGLRRSAQEGEVDYGRDVTQFVERDFYVDDGLKSSPSEETAISLLKRTQDMLACSNLRLHKIASNSIEVMKAFPSQDHAN
DLRDLDLGTDTLPVQRSLGLNWDLKSDTFTFQVNKDEKPFTRRGVLSTVNSLYDPLGFAAPVTVQGKALLRELTVESCDW
DSPLPAAKEQVWIEWRDSLGALSSIQIPRQYTCTPAAGIKERKLCIFSDASTKAIAAVAYLKTVDCKGQCHIGFIMGKAK
LTPQPEHTIPRLELCAAVLAVEMAELITSEIDLQLSEAEFYTDSKVVLGYICNETRRFYVYVSNRILRIRRSTHPKQWHY
VPSEKNPADHATRAVPAACLKQTSWFTGPSFLYSAEQNDPADVYELIDTTSDPEIRPQVSTLCTDTSSMHLGSHRFKRFS
TWKSLVRSITCLLHIVKFFKKDFPSTSNNCKGWHYCQRAHTVDELEQARNIILLSVQQETYAKEFEYIKGKKAISKDSVL
KKLDPFIDENGLLRVGGRIMNATLEQKEKNPLIIPSNHHIASLLVLHYHQQTRHQGRLFTEGALRAAGFWIVGAKKLVSS
VIFKCVTCRKLRGMFQTQKMANLPADRLSTEPPFTNVGLDVFGPWSVTSRHTRGGHANSKRWAVMFTCLSIRAVHIEVIE
SMDTSSFVNALRRFISIRGPVKNIYSDRGTNFVGACKELNIPSNIDKNLVERYLSDQGCAWTFNPPHSSHMGGAWERMIG
IARRILDSMFLQEGSTRLTHETLTTFMAEVAAIMNARPLTSVSNDPEDPFILTPSTLLTQKVSTVKAPPGEFDTKDLYKR
QWRQVQSLANTFWDKWKKQYIFTLQSRNKWQSDKQNIEPGNIVLMKDSQIKRNEWPLGLITRVFPSEDGKVRKVEVKVVK
QNETKLFLRPISELILLLSSTELSNG
>BEL-5_DBp_p2#LTR/Pao 7148-8240 via tfasty with BEL-22_DTa_p2, 1 frameshift. [Drosophila bipectinata]
MSPRPRNTHASLESRCTRGIQSYRCRVCNGIHALKKCRRFLRLSAEKRLRAVLVNRYCSSCLAHEHSDGSCRRGDGCKTC
GQDHHTLLHLVEKPRARRKARQEEHRSRSAGVRTRSVSSGARPSSANSRRGSGAPRPGSATFRQSQPDPRPPTSRHSSIH
PRHSSATPRLPTTAHPPASSAPRQMFRLSSRAPAGRGRAPTLSSLLQRNSVNVLPTALVRIDTGTRSFDTGALIDPCTPS
SCIDASLAACFRLPTTSVGDEQVCSATVGSTTDDSVRLEVMFKIEPHVRVRTPSRELSEAVRAHFRGVTLADERFHLPAT
ISVVLGADMYPRIIQPGFLKIQDGLPVAQSTVFGWVVSGACHQP
>BEL-5_XT#LTR/Pao 387-6798 via tfasty with BEL11_DR, 1 frameshift. [Xenopus (silurana) tropicalis]
MAEQVSPLSQAENTEDQQMADTLLQEEGADNLTEASVKPKRITKLSWKSKENFEITMEEFSVDLAHRWERTVHYMSEVTQ
PSQRVLQLEGALLRFKSVYETYQKLCTKYMSFLKSTNTEESLEELKRFEHLNQERSKKVSETKANVEARITQLQETASHR
STSTRHSKRSSRSSHSRSSTLSELIRARAEVEAAKVRAAFADKKAEMEAEAACKKAEMEAEAACKKAEMEAEAARKKAEI
EVLDRKCDQATAEAKLRVLEQAVGSDLDSVSMANSEDAMERTKNYVLNQNSNFSATSEAPDDTYTPLRHQLSENIVTTQD
LKPSGPSAHQDGPSSHTSPHKPQTIKYQSVNPGVNILAKLPSPLPVTGMLPDNNISSESRPAKAMNFQPVPGLNPHANPY
YPRPPCADVSDLARYMVRRELTSTGLASFDDHPENYRGWKSTFKAAINDLGIPPGEEFDMLIKWLGPQSRERVKRLKAVH
VDNPSAGLHAAWERLDQSYGSPEAVESALLKRLKDFPKISGKDNQKFQELGDLLLELQLAKADPHLPGLSYLDTAHGVNP
IAAKLPYGIQEKWATMGSKYKREKHVSFPPFFYFCDFVKNIAETKNDPSFLFNESNISGPNFGKDKFALDKPRSHRGPMS
VKKTNVLPDPVAKLERGGQGENTENPNRQCPIHKKPHALKNCIGFRKKTLQERKEILKKLGICFKCCASTEHLAKDCKAE
IKCKDCGSGTHVQALHPLQHTSSSADSDPATNHGGEKTNQTANSTSISSTCTEVCGEDLCDRSCAKICLVRVYPNGQPER
AMKLYTILDDQSNHSLAKPEFFDHFRVKGDSLPYTLGTCGGVTEVSGRRANGFTIASLDGIVELPLPTLVECNKIPSHRE
EIPTPEAAFHHAHLRAIAEHLPPLDKNAEILLLLGRDILRVHKARQQINGSHDAPYAQRLDLGWVVIGNVCINRTKRATN
ISSCKTYMLPNGRETLFEPCPYHYSVKERFNSTRDWQSATSDSKSTFNHLEDCIGDTVFISTSNDDKPALAIEDKEFLKI
MDKDFTQNQENSWVAPLPFRTPRERLPNNRQQAVSRFASLKRSFEKKPEMKKHFVSFMQKVLENDHAEPAPPLKEGEECW
YLPSFGVYHPRKPSQIRVVFDSSAQYQGVSLNNVLLTGPNLNNNLIGVLIRFRQEPIAVMADIQQMFHCFIVREQDRNYL
RFLWHRNNDLNDKVIDYRMKVHVFGNSPSPSVAIYGLRRTAQEGEQEYGTDARHFVEKNFYVDDGLKSFPTEEEAIDLLR
RVQEMLSVANLRLHKIISNSNKVMKAFDKDDYATNLKDLDLGSEDLPMQRSLGLLWNIKQDTFTFQVSTCDKPFTKRGVL
SVVNSIYDPLGFVAPVTIRGKFLLRQLTLEKVDWDTPLPDNKLNAWKTWKNSLKALQNPQIPRCYTPISLASAKRKEIHI
FSDASVEAIAAVAYLRLTGLDNRPSVGFLLGKTKLTPKSGHTVPRLELCAAVLAVEMAETIKSEMDTVIDSFDFYTDSKV
VLGYIHNQTRRFYVYVSNRVERIRKFSTPQQWHYISTNQNPADHGTRALPANELARSNWLLPPDFLYDQSESSSTDVFNL
VGSEVDKEIRPESITLYTTIHQKKTLGSHRFQQFSTWSSIIRVVARLKHIACCFKGNSGMPLECRGWHICKNHPTVEEIS
HAEEIILQCVQQEIYTKEINLITENCKVPKNNPLLKLNPIIDEHGLLRVGGRIGKSNLSSKEQNPVIVPGSHHVAVLLVR
HYHEQVKHQGRQFTEGVVRSSGLWITGMKRCISSVIYKCVKCRRLRGTHQHQQTANLPIDRLSTDPPFTYVGVDVFGPWS
VCARKTRGGVANNKRWAVLFTCLSARAVHIEVIESMDSSCFINALRRFFAIRGPVKQLRSDCGTNFVGACKELQLDNFLK
NSGCSWVFNPPHSSHMGGSWERMIGIARRILNSMLLDSGSRLTHETLTTLLAEVSAIINARPLVPVSSDPDSPTILTPAT
LLTQKVGNIPLPPVDLDCSNIHRRQWKQVQHLANVFWSRWRIEYLHTLQSRHKWQETKLNLQEGDLVLLRDKEVSRNDWP
TGLIVKAIPSEDGKVRKVEVKTTKGGTTKIFFRPVTEVVLLLPCEKHSSGQSKTPET
>BEL-5_DPer#LTR/Pao 363-5612  [Drosophila persimilis]
MAAPEPTNVANAAMPSDVDFYKHKAESIARQLKAMDRFLTKEELAELDEAELQARLEQIERMNADFDAAQTSLERLDFLQ
LAHDARLDFSNVYVKVRSRLSRELMAARTVNVANSTARHTLEGNSSLFAYNSIGRSRMPELQLPRFGGNYMDWPEFHSMF
STMVHKDHRIPIIEKFQYLRGCLDGAALDTIRSLELSEENYDKALNLLMLRFDNKLLHFQAHVKAIFGLQGVEKGSAIGL
RALSDKINSHLRALQTLATPQEISDGLLIFIIGTKLDHKTKEKWEENLPTSGLPRWSSMASFLEARCRMLENLGSAMVTI
PSQQVGESKPSTLITSINDHNSSTCKYCKSSDHYISRCQAFLDLPVFSRYKEVKKRHLCLNCLNKGHSLQRCKSGACRNC
QAKHHTLLHMQSGADAELPSPSTEPTQHDPASALVASKYTSPPPSSQKSLPSQNVLLATAIVYVRGRFGSLIPCRAILDS
ASQVNFITSRLANQLQLDPHPSHVQIAGIGESILPSSKAVDIVLQSQDESYHGFLSAIITASITGMQPNFGLDAKDWPMP
NNLKLADPNFAKPQRVDLLIGAGLFFELMCVGQIRLSDQLPTLQKTKLGWIVSGSIKNSEKARAALAAVEDPPVISACET
NLCDIVRRFWEVDGDYSPSSISEEDVHCEQHFVTNCIRLDSGAYSVRLPTKFSLEELGESYQQALRRFLNLERKLAKNAQ
LKAKYMEFLQEYRDLGHMSPASRQSDLPQYFLPHHCVHKQDSTTTKLRVVFDGSAKTASGVSLNDALMAGPTIQPKILIT
LLRFRFFKVALCGDICKMYRCVRVSHPDTHVQCILWRNDPKEEIQVFKLETVTYGTKPAAFLAIRAMHQLANDEELRFPL
GADVVRRDFYVDDLISGGDSIDSVIKIRQQVKELLSKGCFPIRKWCSNEPAALEGVSEADREKFLTFHDGTEVTKALGLV
WDPTTDNLLFSFAHVGTAAGPISKRSVLSTLARFYDPLGLISPIITKAKIFMQSLWNESLKLNWDESLPQDLHTTWIELT
SQLSMVENFKFPRYVLRQQARLEMHAFCDASQAAYGACVYMRSEALGIVQSHLLCSKSRVAPLKSMTIPKLELSAALVLA
ELVSTIVKGLSAPCQIHCWSDSSIALAWIRESPLNFNIFVSNRVQRIQELTAGMTWHHVPTKLNPADIISRGSTPAELMD
SSLWISGPPFLRLESSEWPAGLQLPTDVPERRHAALVVSNERDVSYDCKFQNSFGSMQRVFAYIYRFYILKDKGIARSKG
QLTVIDIKNGTHLLIRAIQQQQFSEEIRALASKQALPPKSTMASLNPFLDSFGLLRVGGRLQNAELDYDAKHPILLPKGH
PVTVSIIIFFHERFLHAGAQGLLGLLRQKFWPIGGRKYVAGIIRKCVRCFRLKPVLREHIMGNLPADRVRTNPAFHTTGV
DFCGPFYHKSEVRSRPPIKCYIAVFVCFSTKATHLEVVRDLSTESFLAALRRFISLRPKPRIIWSDNATNFVGAKNELLE
LRQMFLSDPHTSAVSHLCVSSGIDWKFIPPRSPHFGGLWEAAVKAAKYHFHRIVGTYIFTLDEIQTLACEISALLNSRPL
YAITESPDDLDVLTPNHFLNGAPKAAFDEPDVTHLRVNLLSRWQRLCQMKQAFWRKWSTAYLSILQERSKWRSSSPNIKL
GALVMMKEETLPPLRWPLGRIESVIPGKDGTIRVAVIRTQRGLFKRAVGKIAVLPLQDGSVESLCLPTGG
>BEL-4_DYa#LTR/Pao 1193-6426 via tfasty with Nobel, 1 frameshift. [Drosophila yakuba]
MEKEKEVSAKLNSKLIVAMQKHDRVMSDIGRMKTAFEEKTISFDSFQLEYRMQLLETYCEKLMDIQSDIDVLNPGNDLRA
SVEDMCIITKALYRSAMSRVEAPRLSHGDNSGFRHSSYLPKMNLPKFSGKHSDFKNFISLFESLVHNDPSLTNIEKFNHL
LTCLTDDALGTVKAFQISDLNYEKALASLKNVYDNKCLIFFDTISQLFDLPQVSKPSASGLRSLIDEISALYSSLQSLGS
EKDINNAIFIHIAMSKVDHTTKSRFEEQLDYNTLPTWSDCAIQLNRRYQHLAAEESTKSKGKPSQASNKGYSKSSFSCTQ
TDRRPDSKCRYCSATNHSLGSCQPFMALSVIQRFDFTKHNRLCINCLNPGHPVKKCKATKCRVCSKPHNTLLHRYGVEQQ
PFSSGSVPQVHVQAPSVAVDHNNQAHSCHVASTDQVILATAVVKVRDRFGQFQLARALLDSGSQINFMAEDLAQRLRLHR
QESYLNITTVGKNDSVVRHKVHTSIHSRVNAHSFATNFWVLRSISSYQPDHEVNCAQWRIPANIELADPRFHKPAKVDLL
IGAESFFDLLSVGQIKLGSEHPSLQKTLLGWIVSGKFTQRASKNAQVCSVFGNENVSSLDSLVERFWELEHVPERSKAVY
TAEQLACEQHFEQTVHRLSSGRFEVKLPFKKDPSVLGLSFESTKRRFLALERKLANNRELHDMYQEFMREYLNLGHMSLL
PTPPPEKHYYIPHQCVLRPDSSTTKLRVVFDASSKTSTSISLNETLMVGATIQRELYAILARFRLHKYALTADISKMYRQ
VNIANEDRDFQLIVWREKSTQALQTYRLNTVTYGTASAPFLAIRCLFELSKIYAESHPVASEVISSDFYVDDMLTGANSI
EELEVIRKEVTKVLELGGFHLAKWATNHPSLMTNQGSEKSLIFNTSESVKTLGMRWNPQNDAFHYCLEDSFQSLPPTKRN
ILSVTARLFDPLGLLCPLITRAKILLQELWRQKLDWDESVPMNLHTSWNEFKQNLLAIDKISIPRYICLSGYDTVQIHGF
ADASSHAYGCCIYIRTVAGTNRLSRLLTAKSRVSPLKTKSIPRLELCAAHLLAKLWSQVSPLLNKLELESINFWSDSQVT
LYWLKRDPSTLATFVANRVSEIQELTENVVWRHVPTEENPADLVSRGTDLEGLRCTLWENGPEFLLRNPSEWPRSHQIEV
STELQFSENKKSVAVCSVTKNKPNVFIELVGRCSSFSKLLRIMAYVNRFVQGKKRQREVVISANELKLSFLRMVQIFQKA
EFSSEYVKLEKSECLSPHLQRLNPFIHTSDLEGVTFNLIRVGGRLLNAPIPYDAKFPLLLSSKSEFVSLFLRNLHRTHYH
AGVKVMVSLLRQQIWLINAREACTKIVRSCVHCFRYKPVLMSQIMGNLPADRVRMERPFLVCGVDFCGPFYVSLKVRGRP
PIKTYVAVFVCFSSKAVHLELVVDLSTDSFLSVFKRFVGRRGLPEKVYSDNATNFVGACNVLKELSEAFHRSRDELSGYA
AQRGVEWCFIPPRSPHFGGLWEAAVKSAKTRLLRGVGNAKLTTDELSTHLVEVEALLNSRPIASPGNDPNDGEALTPGHL
LIGQPLITLPQESGTGGVCSKASCAYLKRWRMLSALKQQFWDGWSKDYIASLQQRNKWSVGCRDLEVGCLVVVHEDNVPP
QRWLTGRVVATTAGEDGRVRVAEVRTSGGVIKRAIHKLALLPVHTAPVEEIKEPEAFNGAGMLEQ
>BEL-3_DAn#LTR/Pao 305-4617 via tfasty with BEL-5_DWil, 1 frameshift and 1 stopcodon. [Drosophila ananassae]
MISREYNQTECSACKKSSTGKDIIWVHCDICTTWYHFGCVRDENTQNTKGWKCVSCSKQPPDPTALTDADTAAVQSAASQ
RTVSLSGHSTGAVKKQHKELPTSLQAERANEHILIQNNTLMLQMLEEKRQADQSYIEQKYNILAQQSGAALTTPFGPTST
QLSARQILSPDLPTFNGNPDDWPAFLSAFENSTTVAGFSNVENMLRLQKCLKGKALELVRDKLLLPVMVPDVINTLKTFF
GRPDQILERLIEKARKISINKERLDTLIDYSLAVRNICATMEACQLNHHLNNPLLLRELVDKLPSHYKLTWAMLPKDSSA
ALIKSFSDWLYTIAEAASTVTPSIYSRASNVHTHVQYSMDAQDNSEYNPPRYNASQREATHCNACNSTLHPITECEVFQK
LPYEKKQEMVREYKLCFKCLKIHGRRCFSTQLCGIGGCESRHHPLLHKGHANPDIVSSHRTNPPGGEQYFRIVPIKLYTH
NSYIDTFAFLDEGSSVTLIDEKLFKKLNIQGTLDPICMQWTNQTTRRENESVRFNIKVSSMGTNRTYWLNNIHTVQNLGL
PKQTLDIKELTNKYTHLQRLPIASYTDAEPMLLIGIDNWKLAVPRxIKEGRWNDPIASKCMLGWSVQGSGKDNKHFSMHH
CQCNWTEIDKAVKESFNVEPVIPRTLRSKDDEKAFKIMQETCVKIDGRYEIGLLWRHKDTVLPESYTNALKRLSCLKAKM
EKEPDLRVKIQEQVNNLLEKGYAIELKNEESAPTQPRKDLGDTEKVLGMFWDPESDTFKYIFRFAKLKRNVLSETVRPTK
REALQVLMSIYDPLGFLSCYTIGLKILLQETWRSGIGWDDELPDPSQSFWKKWLKILSQAKSVHIPRHYSPLLHTADSVE
LHTFVDASEYGYAAVCYLRVIKGFDITTNLVIAKSKVAPLKPLSIPRMELLAAVAGVRLAHKTQLTRNLNIGECTFWTDS
KTVLSWMTMDPRKPFIMYVKNLKAKCRGETITKTLSDEIIIQGKNLLYKVAQNEAFKDELDSLQKDNNIQRTSALIGLNI
YLDDCGIIRIQGRSQTINPNDDQIVLPKRHPVTYLIVKHFHESNHHLLHEGTINIIRSQFFIPQLRVVYKSVRKECQKCK
NNTAAPIAPQMAPLPAARIASFQRPFTYTGVDFFGPIAVNVGRHKEKRWGVIFTCLTIRAVHIEIAYSLDTSSCVMCLSN
FMARRGTPREIYSDNGTNYKATEKVVKEELKNVDFNNLTIKYDEIKWNFNPPGAPHMGGAWERLIRSIKTVLKSISPNYS
FNDESLRNAMMNAEYIINSRPLTFVSLDEKDDDALTPNHLLLGSADGYKPIVTKDSDARQRWHQANEVADHFWKRWVKEY
IPIITRRSKWFPKRPPLAIGDVAILVDESLPRNLWPKGRIIGVATAMDGQVRSATVKTHYGTMVRPATKIAVLDVKNG
>BEL-2_XT#LTR/Pao 273-6161  [Xenopus (silurana) tropicalis]
MSQKRTPSLTTRSQVSGSSQRSSVINAAAIARAKAEAAKARASFAEKEMKAKVEWARLEVERKVEAERQEAERKIESSRL
EAFLEKLNIEKEAAAAIAEAEALEAIIYPDSERHSRMPDLETEAQDPLQRTSEYVHRHSKQGMDCLSAQEPDQDRYATQQ
VSGKSQIHQTDNAEQSDPAYGTYANQAPKSMGNPPAASSAMLKRYVTNQPKGEPPDRYDYTTPLHYYTGPPTYPGANQAT
MDFAKFFARRELITKGLVKYNDRPEGFRAWRSSFQNTIRDLDLSYSEEIDLLIKYLGTESAEHAKRIRVININHPQTGLK
MIWHRLNECYGSAEVVENALFKRIDDFPKISNKGYQKLRELSDLLMELQVAKAEGDLPGLAFLDTARGVNPIVQKLPYNL
QERWMTHGSKYKEMNNVPFPPFTVLLDFVYQQAKMRNDPSFDLSLPHTTPLALNARKAAVTVHKTNASFSDSSHRSAGST
REETKSRDPGKQCPLHQKPHPLLKCRAFREKSIEDRKTLLKENNICYKCCSSTAHLAKDCKVSVKCTECDSTHHNTALHP
GPTLWVLPHNNGASKHGGEEGNTATATPEVSSQCTEVCKGATGGKSCSKICLVRVYPTGHKDRAVKLYAILDDQSNRSLA
CPAFFDAFNIKGPSTPYSLKTCAGITETTGRRASGYQVESIDGQVQLSLPTIIECNRIPDNRSKIPTPDVAQYHVHLKPI
MHLIPKLDPKAQILLLLGRDILQVHKARDQINGPNNAPYAQKLDLGWVIIGDVCLGSVHKPAYVNSLLTNTLENGRPSIF
QPCHNSFLIKERPFNTNLTHSLLNPLDDKNAYDGDQDHLGCTVFHRSKEDNQVAMSIEDKLFLEIMEQGLVKNDANSWVA
PLPFRPRRQCLPNNREEALKRFNSLKRSFQRKPEMKSHFFTFMGKIFENSHAELAPTLTDTEECWYLPIFGVYHPKKPGQ
IRVVFDSSSKFKGVSLNDVLLTGPDLNNKLLGVLLRFRKDSIAFIADIQQMFHCFLVREKDRNFLRFFWYRDNDPSKDIT
EYRMRVHIFGNSPSPAVAIYGLRRSAQESEVEYGSDVKQLVEKDFYVDDCLKSLPSSKAAICLLKRAQEALACSNLRLHK
IASNSKEVMQAFPSQDHSNDLRDLDLGADSLPVQRSLGLLWDLQSDTFAFQVNEEKKPFTRRGVLSTINSLYDPLGFAAP
VTIQGKALLRDLTMETSDWDAPLAPDKKNMWAEWRSSLTTLSSLQVTRPYASIPSTEIQSQKLYVFCDASVKAIAAVAYI
RTVDVYGQCHIGFVMGKAKLAPIPEHTIPRLELCAAVLAVELAELITAEIGIELKETVFYTDSKVVLGYIYNETRRFYVY
VTNRVLRIRRSTCPEQWHYVPTDYNPADHATRAVAASQLKSTSWLTGPAFLCRTEQTVSENKTFELVDANSDAEIRPQVS
TCHTIITNNQLKSSRFNRFSSWESLVRAITCLTHIARSFKHTSSKDVSTCKGWHRCKNVYTVEELQQAKNVILHTVQHEI
YSKEINCITGGKPVPKDSALRKLDPFLDQNGLLRVGGRLKSAEIEFGEKHPLIIPGNHHIATLLVCHYHAEVKHQGRLFT
EGALRTAGLWIVGAKRCVNSAIFKCITCRKLRGRLQTQKMADLPTDRLSQDPPFTSVGLDVFGPWSVSTRHTRGNHANSK
RWAVIFTCMTIRAVHIEVIESMDTSSFINALRRFIAIRGPVKHIRSDRGTNFVGAAKELQISSNVNVKDVERYLGNQDCS
WTFNPPHSSHMGGAWERMIGIARRILNTIFLQVGTARLTHESLTTFMAEVSAIINARPLTSVSNDPEDPFLLTPATLLTQ
KTVTLSAPSGEFTNKDLYKRQWRQVQCLANTFWDRWRKQYISTLQPRNKWQTAKPNLKPGDVVLVKDCQSQRNEWPLGLV
AKTFPSEDGRVRKVEVKISKQGETKFFFRPVSELTLLLSPQE
>BEL-3_DBp#LTR/Pao 717-5924 [Drosophila bipectinata]
MAPKRRLSRQQSSSVHDVNDGNDRANSLLSRLESVKGDIDRMGEFMQQQIVSIRGSELECRLDILNNYINRAFNLQEEIE
SINPVLSSRAELEDKCVATKSLYMSASVQNQRPPLLNSTLNTTSSHNKNLPRMNLPKFSGCYSEYKNFIGLFTSLIDSDP
TLSDVEKFNHLLSCLEKEALGTVKAYQITETNYPKALAALNRVYDNQCLIFFDCISRLFDIPSMQGPSALSLRHMIDTVT
AIYESLLSLGSDKVIANAMLIHIVMTKVDAKTKSRWEESLDFQNIPLWQDCQDALNKRYQHLAADEATSSTQRSRKLGRP
NSLKNFSKTSLSVANTTRTQDPKCYYCKAVDHYIHACSSFVAATVATRFKFAKTFPLCINCLRKGHSVLSCQSSKCRVCS
KPHHSLLHRYSSDSSPSELASTQEPIVTQPLTTSAVHHAMTADSNQIVLATALVNITGSNGQMHIARVLLDSGSQVNFIT
EELSKILKLKRDRKDTNLLGIGQSAVSARHVVQATIHSRTQAFQLEAELIVLKSISSSQPERAVQVLDWNLPDNIKLADP
LFHKPQRIDILLGADAFFELLKEGKFKQETYGPVLQNSVFGWIVSGRCKSSKTNFKQATSMLSAVQDHCSVDMLIRKFWE
IESLPSIAQNKLYTPEQIMCEKAFIESIVRLPSGRLQVSLPFKSSPTCLGSSFEIAKRRFLALERRMSNNPEINSMYVAF
MKEYISLGHMTLVNDEIPTEPHFFIPYQCVLRPQSSSTKLRVVFDASSKTSSQVSLNELLMIGPTIQPCLYATLLRFRLR
KYAITADIVKMYRQVEITESHRNFQLIVWRQYKDEKLQVYRLNTITYGTACAPFLAIRCLKYLSEIYSVSHPLGSLVLSN
SFYVDDLLSGADTIEELTSMRNEVVEILGSAGLVLSKWATNCEQLIDLNQSTDVSVGEHEDTKALGLVWNPKHDIFKFSS
REMCTSHAPTKRSMLSLTARLYDPLGLICPVVTKAKILIQQIWLLKIEWDDPIPESLQQKWQSITIGLEELDILTIPRHV
GTTKNTVCQIHGFADASTEAYGCCLYIRVEHPHGVEVKLLTAKSRVAPLKTKSVPRLELCAAHLLANLWEEVRPLIDSPV
ERVVMWSDSEIVLYWLQTHPSKLKTFVANRVSEIQEMTSSASWRHVPTDSNPADFPSRGCTVNELKNSFWFDGPHFLTQD
QRRWPQNTKIQQINTNEELEIRNITTSHVTTQLEPNPIEKIVENSSSFLKVMRIVAYFLRFVNATKSRSWSSLNPTSVEL
GSAFLLVVSVIQQNAYKSELIKLQKSVKLPDSLQKLSPFVVTESIGKLEVSLLRVGGRLFNAQLSYSVKFPLLMPKGNRF
VSLYIQHLHRTNCHAGPRALVGLIRQTIWLINARRECSAVVRQCVHCFRYKPKLASQIMGNLPADRLIGTRPFAISGVDL
FGPIRVSLGIRGKPPIKMYVSIFICFLSKAVHLELVKDLTANTFIMCLSRFVGRRGPIEKLYCDNATNFSGSSRIIHDLM
SKLETHKDAMTAFGAPRRFEFIFIPPRAPHFGGLWEAAVKSAKHLFLRAVGNALLKEDELQTVIVEVEAVLNSRPIIADG
SSPNDGEAITPGHLLVGTSLATLPPASAQANVEPNLSFLQRWHLVSAIKQRFWQDWSRDYLLSLQQRVKWNKESPNVTAG
TVVAIQEDNLPPQTWLLGIITETITGADGRVRVAIVKTKNGIYKRAVHRLAPLPIN
>BEL-4_DWil#LTR/Pao 125-5455  [Drosophila willistoni]
MAEKLLPLATEQITLLTSLEKSLARYKSEESGHTESHLEARLDSIAHLHADFQRNHHQLIQERDNAEIKGRYFDKDIRDC
FEETYIMGVAEIRNELQRHKDRRIPASTAFDESCLHQTVHEQMGPCLEEVKLPTVKLPTFSGKFIEWPAFKEVFLTRVHH
CDKLTDLHRFHYLKDSLVGDAAKDIEHLTLIAANYEVAWRMLINLYDNKRVLFLHYMDVFDQQLPIKYGDAESLRRFVQT
SRSCVNSLEKTGVDVRQQSEILVYYMMKRLPNQLRVDWERSISSTQNLPSFEELSQYLETQYRTMITASAGNIEGTLSRD
RHRNAKPGVHGLRANQNYTKASFVTRETDLCIVCQGDAHLIGVCRIFQEMRLSERKACVVRHRLCFRCLRPNHRIDACDS
VVNCEKCQGRHHTLLHVDKSGCERPLGTLRKGVIPTASANALIGKSTTKTAVRHKDEVLLPTAMVWVESIEGYPLQFRAF
LDQGSQVSFISEIAAQQLRLRRKQAHITITGLADTKITDAAAEVELVIRSIYNPHAKYKLLASVIPLVSKRMPIKRLPFE
EWTHLKGLPLADPNFFSPQGVDILLGNDVYDELMLGEVHRGIRGMPLAQNTHLGYIVSGKTNQEAGRRSSYTITVRRKEA
DEILEQLLCKFWELEQFDEEPRGVSVEDNWCEDFFVKTHSRMPSGKYVVRLPFLTYLDESMVIGESYKSALKRLHSLDRR
LRNDASLKNAYVGTINEYLELGQMERVTSRASKTGNPALGGVDHCYLPHHPVIKESSSTTKVRVVFDGSSKTSNGKSLNE
ILAIGPKLHVHLQGIILNWRGLKWVFMADVEKMYRCINIPPDDAQYQRILWNPETSDYVEEYACTTVMFGTSSAPYLAMR
VMKQLAMDECEKYPLAVDVINHQMYVDDILSGGDSIAETEDVKNQVIGMLRSGTFELRKWASNCTKLLENIPVEHRESSG
LLHMEGNDTIRTLGLYWSPKEDEFRFALHVVPPMSSPTKRTILSAIARLFDPMGWLSPIIITAKILMQQLWKEKIGWDST
LPDTIKREWEKFVKELPNIVTIRIPRHVTWGLPGGVAELHLFCDASSRAYGAAAYLRFPIGEDKYHTELLLSKGRVSPTK
QQLTIPRAELCAALEAAKMYKYLKENLRININYSNTIFWSDSMITISWIRGGAANWKVFVSNRINKILEISDERQWRHVA
SKDNPADYLSRGTSATKLASCELWWHGPSWLQGSDIEWPCNAIDQDSLSVVDTEVKKVTCHKISVEEMPSVAFISKYSSY
TRLVWIISYIKRFVYNCRTSVAERRGPGLSIVELEEGLRELIRMVQKDCFNSEWKALSEGRVIAKDSILLSLNPYFDSNE
RVLRLGGRLRDSLLPINEKYPYILPYKHPFTDLVISYSHICTLHGGTSLTLNFIRKKFWIVNGRNAVRFGIHKCITCFKM
KPQFAGQKMGMLPAVRVRPSRAFSSVGVDYAGPVNISPCKGRGRVSQKGYIAVFVCLVTKAIHLEPVGDLTSDAFIGAFN
RFIGRRGLCTDVYSDCGTNFIGANKKLQVDKLAYCSYITKHIAPTLLRKGINWHFNPPSAPHFGGLWEAGVKSMKYHLKR
TLGEQVLTFEEMATVLAQIESCLNSRPLCPLSNDPDDLMVLTPGHFLMGEAPLALPAPELAKVTLIDRWKNCQYYAQQFW
RRWNSEYLSRLQRRPKWLQTKENLTVGCIVLIRDERFPSHQWPLGRVMETHAGPDGLVRVVTLKTVKGLMKRPVAKLCPL
PIQENWIENDTSPTPKR
>BEL-4_CQ#LTR/Pao 39-5735  [Culex quinquefasciatus]
MAPKPKPDVLADCVVCGKPKGDDAETVECEACRLWAHLACAGETGKVENYFCPNCSQSLQVPKTRKNAKKPKSDAGTTSG
AADLPKDVLEQLELERVEREKKMAQEVMIRMKRIEMEKSFAEQELRIEREMQEREFAAANEVRALKLKMEQEFLDKQKAA
EEEFLAKQKELKKLVKKSKQKLEKAAVDPPAGKGEGAGAGSTDTPKGVLEKPKLPVPKLSDSDHDSSGDESDEKEDPTTP
VSGSREVSDGPGKPVTKLTKEQLAARQAMSRHLPKFSGEPEVWPLFISSFKYTTEACGFTNVDNLKRLVDCLEGPALTLV
QGRLVLPDAVPDVIEDLRHMFGRPEKLLRALLQKVRNAPAPTSDNLDTFIHFGITIKQVCDHLEVSGMKDHLNNPMLVQE
LVERLPTSHQLDWVRYRRGKVNTPLRILSDFLSELVEDVSEVAEFAALSLQEPTKAQGGKGKRNEFVHLHEATREKAAGG
RTSMACYVCKQTNHLIRNCSEFRGMRVPERMKTVERLKLCTVCLSSHGNSACHSKMRCQIGNCRGQHHPLLHREEAARQF
QRVDCNTHKVNGGVIFRTIPITMYAGSKAFNTLAFLDEGSSSTLMEEYVANKLGVQGKLEPLVVSWTAEIDRHENQSRRV
SLTLAARGSREMFQLENVRTVSKLQLPAVAGVQVAEQVKEKPTILIGLDNIHLFAPLESRVGQQGEPIAVRSKLGWTVYG
PDTPKPLVHTFLNLHVVKPASNQELHDMMRDQYVLDEAGVASFAVPESAEEQRAKKILEKTTKRTGERFETGLLWREDER
RFPDSYPMATRRLQALERKLDKNPTLKQNVSQQIAEYQSKGYAHKATAEELKTPSNAVWYLPLNVVLNPRKPDKTRLIWD
AAASVRGVSLNSQLLKGPDMLVPLPRVVCRFRERPIALGGDIQEMYHQIRIREEDKQAQRFLFRENPADAPQVYVMDVAT
FGSACSPSSAQFVKNLNADQYAEEYPEAAAAIKERHYVDDYYDSVDTVEEAIRRANEVKFIHSKGGFNIRNWVSNSRKVL
DAMGEQSVKTSVHFNQEKSAFYERVLGIVWEPDQDVFCFAVASKPEFRDVLAGERRPTKRIVLSVVMAQFDPAGFLGPIT
ILGKILVQDLWRTGCEWDEMIDELAFQRWLRWINILADAKHFKLPRCYFGNARWDEIEEIQLHIFADAGDKAYGCVAYFR
AIVRGEVVVALVMSRSKVAPLKMLSIPRLELESCVLAARMSQAIHDNHSFPISKTFFWTDSAVVLSWIRSDQRRYKQFVG
FRIGAILSMTSLMDWNFVPTQHNIADILTKWGKDPNVRPDSPWVCCPRFIHDQQVNWPKKSLPPPNTTEELRVHLLLHDV
KVVDTIVEVNHFSRWTMLVRTMACAHRFVSNLKRKTKGLPMETLRATKAQAKMLRPTTVPSVRVALQQDEYKQAEVYLLK
MVQAESFIDEVKVLTRNKDRPADQWLALEKSSPLYKLTPLVDEDGLLRMEGRTENAEFLPFDLRFPVILPKDHHVTRMIV
QHYHQWFGHGYRETIKNELRQRFFILGVNTLVRQVAAACVWCKVHRNQPLVPRMAALPVQRITPNLRPFSYVGVDYLGPL
DVSVGRRSEKRWVALFTCFVTRAVHLEVAYGLTAQTCLMAIRRFICRRGPPVEFFSDNGTNFRGASKELVETVRSIGNDC
AEVLTTSRTKWTFNPPAAPHMGGVWERLVRSVKEALEALDDGRRLTDEILVTCLAEAEDMINSRPLTYVAQESSQAEALT
PNHFIRGVSPNEPNTVPPSPHPAEALRDAYKRSQQLADVMWQRWIKEYVPSVNQRTKWFGESRPLKAGDLVYIVDGKNRK
SWIRGVVEEPIVSGDGRIRQAWVRTTSGLVKRATARLAVLEIEGKPASEASEPGLRAG
>BEL-6_CSa#LTR/Pao 194-5953 via tfasty with BEL5_Cis, 6 frameshifts. [Ciona savignyi]
PSEVIVYTNRRMEDLKEIRTTDLASVAKVEKKLCKAILKQEPKNVSKYKVRFDSTCENCLVVCREYLNILKSESAREIAV
ERIKEVEDKRSIMEKKYRDFLQLCASSQASAVASKEDGGTISTNSHSSGCRQKTSLLKLQAKQLEQEAELEKKRLKLLEL
ELSVSRAKAAAREAELLSEGSLFDDGCSKISMPLISLRAHAAKGNAVTDVSGTSKDKSTKSLGPVSDSKVIGNGVNVNKE
SKSIPIPVLAKKDNLYNSMLDDCHTPKPGKAEYMINPIGYSNPRLPSMELGSFDGNILDFYSFMKDFVESNVSDDGARLK
FLLQLCKGEAHETIKCCRIMSNRSLGYKTALQRLQNKYGERYSVVRAFMKEVTDGPVLKSGDADGLFLLGDKMFNCFTTL
TEWGYGQDLNSSSNLEKIYDKLPDHIKLEFCRLSTRRRADGLQPTFDDLMNLVQELARATQDNFYQRYCGSLSKSKVEGP
KYRAPKRLVSATAAIHAPKERSPCMLCEQAHPLWKCDTFREKGVQERWNYVKEHNLCFNCLKANHSFRYCSYQGRCSDCG
KRHNYLLHFPRSDAKTTPEKTSDHVISSVSTRKQDKDIKPPTSLNVVPVKVWTKCPGECIKTYAFLDSGANISMCSQTLV
RKLGLDVCDQNFKIETQNGVSSHGLIKDLMHIQGIEEPNVFNISNVVVSDKIMDVQSSIPTEEIAALYPHLSDLRFPKIE
NATVELLVGNDVLDAFRLTEQRCGRNGEPLGLHTGLGWSIFGAELSSKNGRASCAYIQFLGRDMPKSDKQSCKEMLEVFA
QDFKDLKEPQRSELSREDKKAKDIMDSTVVKIDSQFQIGLPWRRSNVSFPNNRIMAERRLSSLKRRFKRDPELLKKYHNK
IKEYLTLGHARRIPEDELEPKSRTWYIPHHCTGPKFRVVFDCAAKFKNSSLNSELLQGPDFTNSLVGVLLRFRQEPVAVL
ADIKGMFPQVLVKPEDRDSLRFLWWSEGNLDSTPVDHQMNVHLFGATSSPSCAGYALRRVAAENKTGADATTIKAVMDNF
YVDDLLKSCASVKEMLNFLSQIKPLLRSGGFHLTKYLSNSNEVLNSIAETELSPSLSHGCRTVLPTEQVLGVLWNTSVDC
FEVKVNLCSKPPTRRGMLSMVSQIYDPLGFVQPFVLPAKKLLQGACNDQLGWDDPVTDLRRSVWENWLQSLSKLEEVTIP
RCFKPVSFIRGSKLHTFCDASKLGYGAVSYLRIVGNDDVISCSFVMGKSRVAPICPISIPRLELTAAVVAVKLMNNICHE
LDYDPSDVTFWTDSTTVLQYIQNKSTRFQTFVANRLELIHNSTSPIQWRHVDTRRNPADIASRGLMPSEVGKAEMWFKGP
AFLYESEDKWPVCPTVLPPIMENHPEITRKAIVYSVVPGQNSGSVIHSLLNRYSTLAALQRSVAWLLRFKKYLLWKSCRS
REVGSEPMTLPSFLSSSELEDALLAIVKVVQKEAFPAQIKHLHDHDSFDAPLVIHSVSQLRKSPLLNALQQLSPFKVKGV
VYVGGRLRNSKLSQYAKHQMILPPRHFVTDLIISHYHCRHGHSGTMHVLSAIREKFWILQGQAAVRRALRECRKCRYWKA
SVGEQMMASLPPARVTPGNPPFSSVGVDYMGPILTKLGRSHVKRYGCVFTCLATRAVHIEVAQSLETSAFIDVYRRFISR
RVGCPKQIYSDNGTNFVGAERELREGIRRWNKRQIHDALLQEEVNWSFNPPAASHQGGVWERVIRSVRKVIRSIIGEQVL
DDYGLITLMAEVERILNDRPITPLSDDPRDLLVLTPNMLLKGAVDNTLPPDEFIKADGYRKSWRRVQLMADQFWDRWLKE
YLPLLQRKQKWLQPCKNLRVGDVVLVVDEKVKRGQWPKGVIEHCLCDKNGLVRRVRVRTAHATLERDIRKLCLLEGHI
>BEL-38_CQ#LTR/Pao 383-5693  [Culex quinquefasciatus]
MVLHTPMKQPVNTDEVKSLIHQRGQVKGKVTRIKSALDEAKKNPQRITKATLKVYEKKLEAHYQEYVLRHREVIKAVDKK
EEQDDVLDVFDQLHTETLVLVEELMEMFNQPVAGPAPFQVGANGVAPQVIVQQQPLRAPIPTFDGQTENWPKFKAMFEDL
VGRTRDSDAMKLHHLDKALVGDAAGLITAKMIQDNNYEQVWKEISEQFENQRVIVDTHIDGLLQLKPITKGNHKDLQALT
KACDRHVAGLQYQGLVVDRLSGLIINKLVVGCLDDSTRQQWERTQKQGELPDFNQTLQFLKTECQVLERSQNSRVLSSAK
EQSTTKPSCPKPTQKSHTATSAKVAKSCLVCGADHRHFECSKLLAMTVPERNAKVSELKLCFNCLRAGHRLSSCSSNLKC
QTCHKKHHTLLHNDSFSKAQSVRPIPSLQVTNPTTPQSESPNLPTSTTLSQNLQQQIPLNSSCSSNHSQSLKTVMLLTAL
VLIENDGDPVPCRALLDSGSQVNFLSERIADKLKAPRESLYVPIAGVGGSKMYAREKVRVTVPSRYSAFAASIACLVVPK
VTGIIPGSKIDVSSWSIPVGIQLADPEFNVPERIDMLIGASMFFSLLKSGQLHLSDDLPELRETHFGWVFSGEIENSVNH
SHIANNASLDVLNQTISKFWEVEDLADPMPPPSDVDECEKLFVETHRRLPSGRFVVRLPFREDVSGLPDNRSLALRRFLL
LERRLNREPSLKQQYAKFIDEYETLGHCREVDESKDVDQHRYYMPHHAVLRPTSSTTKLRVVFDASAKQGSTAKSLNEVL
HVGKPVQSDLFSILLRFRKNPIAFTADIEKMYRQVLIDSSQTRFQRILWRSDSSKPIRVLELQTVTYGTAAAPFLSTRCL
VQLCQDEREKFPLAAEVVRDDCYVDDILSGASSADEAVVVQRQIRKMLESGGFRVHKWSSNCQEVLSSVPESDREKLVCL
DQGNEVVKALGLTWCPQSDEFMFVVRLPKDVTEFTKRSIFSEIGRLFDPIGFLSPVIVVAKLYMQKLWLIELPWDAKVEE
DLLASWLCFRRALPKVSEIRIPRYVISPSTVAIELHGFSDASVVAYGANIYVRCILSDGRAQLRLLCSKSRVCSPKKDLN
IHRKELMACELLARMMVRVLETVKFKVSQVVLWTDSQVVLAWLKKSLAKLDVFVRNRVAKILELTAGFIWKYVRSKDNPA
DIVSRGMLPEALMSKSEFWEGPFFLRIEVYDEEIPPEIPDDELPELKLGPIIATPVFNEDQLPVFTRFSSFRKLQRVMAY
VQRFIQNCRQKDPSCRVFMIHPTIPELRASLELIVKIIQHEALSDEIHRVQNDEPCKKIAGLHPFYQDGVLRVGGRLQQS
SLLFHSKHPYILPKHPVVDLLIRAYHEENLHVGPKSLIAALRTRFWLIDGRSSVRRITHRCVTCFQARPKVASQLMGNLP
AYRVNQALPFEVTGVDYAGPVYVKEGRYKPKIVKAYISVFVCMVTRAVHLELVSDMSTETFLAALKRFVGRRGLPREIHS
DNGTNFRGAKTELHELYELLKSQVTVDEIAQFCQPREINWSFIPPEAPNFGGIWEAAVKRTKFHLKRTLKEAKLSFEEYA
TVLTQIEGILNSRPLYATSSEPNDSEILTPGHILIGRPLTAVPEPSCEGVQINRLIRWQYMQRLRDEFWRKWHRDYLQTL
QPRGKNRVKSANIKPGMIVLLEEKDAPVQVWKLGKITKTFPGKDDLVRTVEVQIGTVVYKRAIHKIAVLPIIDNANLVKV
TEIPSLPGGS
>BEL-34_CQ#LTR/Pao 1149-6494  [Culex quinquefasciatus]
MSRRSTVTRLRNLMTSFNGIYAFMESYDASKQAGELVMRLEKLEPLWDKIDDAITEAELADSEEGTGEEERGEDKGEEKS
ESGEKKGSKPERYANIRSAFQNKYFTVKAFLQSKIRELPDQAQALPMVSQSAHTTPSTQHVKLPTISLPRFSGNYEDWLP
FRDLFVSLIHSSDLPNIEKFHYLRNQLDGPAKTEIANVKFTADHYTVAWELLEKRFGNTKHMKKLEIKSLFDLPTLRKES
VAELRELVEGFDKTVRVLDQVVEYAKYRDLLLVHLLCSRLDDKTLRSWEEHVSTKTEETFQDLIDFLRRHICVLESLPTK
HQESHQSKPRKAFATKVSNQNTVHSNPNFGCLACSDSHPLFKCPSFARMSVSEREKIVNQNALCRNCFRKGHIARNCTSR
FSCQRCKERHHTLVCYKPEGKPNLCPAIPARPTKEEAGTAATAESSSAAVAETRTANTSSAATVGKVLLATAVLLLVDDA
GQEFPARALLDSGSECNIVSTKLAQRMHVSRNKANVQISGVGQVPTKTSQKVRATVKSRLSKYCEVMEFYVLAKVTEDLP
TSPVESTSWTVPEGVQLADPEFFRTNPIDVLLGGEFFFNFFPSKQRISLGAGLPSLVESVFGWIVTGRCGWNRGEAPIVC
QHSTVTETLEEIMTKFWECEDGGFTSDYSVEESTCEDHYVRTVKRGGDGRYTVGMPKSADLHIKLGESKSAADRRLLFLE
RRLARDDDLKKEYHAFMKDYLDRNHMCKIIEDPTSTATTYYLPHHPVIRSSSTTTRVRVVFDASSKTSTGTSLNDVLLNG
PVIQDDLRTIISRSRLFPILLVADVEKMFRQIRMDAEDLPLQRIRWRFSEDDPIDTYELLTVTYGTKPAPFLATRTLKQL
SVDDATKYPLAAVRIARDVYMDDVITGAYHPAEAKQIREQLHTMTLGAGFPLRKWVSNCEEALEGVSEDNLALPREKGID
FDEERTVKTLGLVWEPKTDTFRFKIESTLIPPNELTKAKILSIIAKIFDPLGLVGPVVAKAKIFMQGIWELKNAKGKPWD
WNDPLPKSMLDEWMQFYEQLHYLNNLRIPRFAMIPNPVHIQLHFCSDASEKALGANLYIRSEDKEGRVKVSFFTSKSRVA
PLKRQPIPRLELNGFWLAADMYRKFKECTTFRFETFFWTDSRTVLQWLAKPPRTWNAYVANRVSFIQHITQGCHLFHVPG
VMNPADQLSRGLDPKEFIDGDWDPLWMYETSSWPAQATPEEETEDCAKERRKHVESAAAVSAKSFNESYFAKFNEYWKLI
RTTAYWRRYLRNRRLPEAERTLSVPLTTKELQEAEWCLARLVQQEAFSRELQDLSKGKPVHNTSKLRWFNPQLSKEGVIR
VGGRLGNCDRNENFKHPIIIPGNHHFSKLLADCLHLRLFHAGTQLMLATMRQKFWPLRGRDLCRQTTHQCKDCFKAKPQL
LQQFMGQLPTPRTIAARPFTNTGVDYFGPVYIRQGYRRGPVKAYVAVFVCFGTKAVHLELVSDLSTAKFLQALRRFVARR
GKPADMYSDNGTNFVGAKNDLKDLLHNLRHEKHHEHIQHECSQEGINWHFIPPGAPHFGGLWEAAVKSAKKHLLRVVGQS
SISHEDYITLLAQVEACLNSRPLTPLTEDPSDLEPLTPAHFLIGTSLEAVPDKNYSEIPNNRLTHWQSIQQQLQHFWRRW
HTEYLQQLQARVKNWQPAIEIRPGRLVIVVDENQPSMKRKMARIHEIHPGADGVVRVVTLRTATGYLKRPVTKICLLPIP
AESIEEEKAETAEIGQFQGGS
>BEL-39_AA#LTR/Pao 1312-6654  [Aedes aegypti]
MTDKKIKEKVKKRERIVDTVKRHASFLGIYDPSIHRGEVQSRLDKIEVKFDEFEEIQEEIAELDAEGKFEEDCSKAADEF
EKLYYSLRAALLAKIPSEDPPADLNNSIGRAGLALGAHTGVRLPQISLPEFNGDIRVWLSFKSTYMSLIHESGELSDVQK
FHYLKSALKGEAAKLIESLAITSDNYNIAWDTVTKRYSNEYLLKKRHLQALMEYPKVEKESSSAIHALVDEFEQRLKILK
QLGEKTEHWGAMIVHWMCSKLDMKTLQLWEDHAASTKDPTFAILVNFLEKRTRVLEAVSSNVELQCSSQKSEVKRQKVVV
HAATDSEQRSGLVCSCCGESHFLGRCGKFNQMTLKEKLQFVNSKRLCSNCLKSGHWVRDCNSKFSCRDCGKKHNSLIHPG
FSPSSSGAGNSDHLAGKAEKKRNGTVATNVATNEEEAEQEIDDQEAVGTYNVGTKVGKISNVFLSTVVLVVRDLHGGKQL
ARALLDNGSQANIMSERLCQMLNLKRRTANVPISGIGQSETRARFIVNTTVSSRIQDFSVGMEFLVLQKVTSELPSAHIP
VAHWNIPKDIQLADPNFNTSNRIDLLIGGEHFYRFLYEREMKRIVLGPGLPMLINSVFGYIVTGKVSETHDYSVSCCLAA
TPGQLESDNLEAQLRRFWEIESSEDRPAWSKEEQDSEDHFVKTFSRTEEGRYVVRLPKHINYGQMLGNSHAMALTRFRRL
EKQLERNPDMRLQYNAFMQEYLNLGHMREVNEEELSKEMMSDNSKKVCYLPHHAVLKETSTTTKVRVVFDGSASTDSGYS
LNDALLKGPVIQDELLSLLIRFRKHEVALVGDVEKMYRQVKVHPEDAGLQRILFRFSPEEPIRVFELSTVTYGLTPSSFL
AIRALHQLAADEGVAYPEAAKAIVHDFYVDDYIGGASSVDEAIRLQGDLDTLMKKGGFALRKWCSNRPEVLTGIPADQLG
TNLSISFDISPEEKVKTLGITWEPGTDQLRFIYENVESEQTWTRRTILSSIAKLFDPLGLISPVVIVAKMLMQELASRKI
AWDTPVPDDIRKKWTTFYSELDKIAELRISRFAFASNWVDIQFHCFADASTVAYGACLYVRTTDQAGNVRIELLASKSRV
APLQRLPIPRLELCAAKEAALLHSKVTKALSLGEVRSTFWSDSTIVLHWLRAAPNTWQTFVANRVSAIQTSTHPHSWRHI
AGKENPADLVSRGMTINDFLHSQLWNEGPPWIRDDEDTWPYQVNGFNPPDDQLEIRKVVHQATVAEPSTNDLFSLRSSLP
PLLRIVAYCHRFAHNCRFPNDRRRGIVLTAEEIQAAKMALTRLAQAERFSEEFKALQHQQPIHRKSKLNRLFPFLDSDGV
LRVGGRLRFSTIGYAAKHPAVLPSNHPFTDLVIRYFHYQNFHSGPQLTLSEIRQEFWPIHGRRAVNNVLRKCIRCFRSNP
APIQQPMGQLPAGRVRPGRPFLITGVDYCGPFYLKPPRRNAAPPKVYIAVFVCFSTKSMHLEMASDLSTASFLSVLRRFI
GYRGVPAEIHSDNATNFSGARNELKALYDLLNNSISRTTISNELSQQGIQWKFIPPRAPNFGGLWEAAVRSVKTALKKEI
GLQQLTYDNFLTLIVQITATLNSRPLSPLSDDPTEFEALTPAHFLIGSSMKALPEPILISIPTNRLNHYQQTQQMFQRYW
QRWSKQYLTQLQVTTRNLPTNPMQVGSIVVLREDNLPPLCWPLARIISLHPGSDGIVRVVTVKTATGVYKRAVNRICPLP
TEDVNRRTTRASGLPAISDRN
>BEL-81_CQ#LTR/Pao 833-6154  [Culex quinquefasciatus]
MPKKVSYKLKIRNTILASLNRADKFLQNFVLEKHADQVQSRLDAVNQAWAEFEALQLEIETIEEEDLKEEDDATAMEEEH
ERVREQFEGLYHKVRAGLKSRLPSGVASGSSACVARAGIQLPKITLPKFSGEYDEWLPFHDTFKSLIHENVDLTAIQKFH
YLRDCLIGEARKMINSSEFSAKSYQVVWDLLVKRHANKYLQKKRYVNGLLQFPRVKGVSSSSIHDVMDHFSRCTQILDQL
GEVTGGWGVMLTQLLVSKLDDVTQKEWEALAAKKEDPQFTDVIAFLEERTKVLDAVAVDQLLGSQRGSPSVSSVPAAQPK
KSFPKLTVNAASDSSSPKCRMCSGPHSLSSCSDFKKLSLDGRNRLVLSKRLCRNCLWSGHFVRDCHVRSRCSSCSEKHNT
LLHPVGRTGSGSTPSAAVTGDSQEGGSRSSTAPAAQPQAVTSSVATIYAANVAAESRKVHVFLSTVLVAVKDCHGRLHTA
RALLDSGSQANLISERLCQILRLPRKKVSVPISGVGSSRMQVDSSVSAIVSSRVTNYTVPMECLVLKKVTEDQPSATIPI
DQWNLPSDMVLADPGFHKRAPIDLLLGLEFFYEFLLLNGGRVQIQRPGEGLPLFVNTVFGWIAAGKTDLGSLNPVPSCHV
SVNATLEEKIERFWTIEELQEAPKRSQEEQDCEEHFQATFSRDVTGRYVVRLPKRMGFEKMVGESRNMAVRRLMQLERRL
GKDESLRKRYNEAIQAYLDQDHMKVVSEEELKGDKRLECYLPHHPVFKESSTTTKIRPVFDGSAKTTSNFSLNEALMIGP
VLQDPLFDLVLRFRKKQVALVADIEKMYLQVKVHPDDTPLQRILWRPSPSEPIRTYEMLRVTFGLAPSSYLATRCMQQLA
QDEGEVYSRAKEALLRDFYVDDFIGGADSEEEALLLRQELEQLLPKGGFRLRKWVSNATGALAGLAADDLGTQTTLSFDQ
EQVKTLGINWQPGPDVLGIDVTGLSVNGQWTRRKVYSVIAQLWDPTGITAPVISWAKIRMQLLWVATQGWDDPLRPDLAG
RWTEFYQQLPELSKISVDRCAFVENPVHVEFHVFADASEAAYGACIYARSISQSGLVKISLLAAKSRPAGLKKVTLARLE
LCAALMAARLYRKVVQALKMEGTESWFWSDSTVVLAWLRSPSYVWPTFVANRVSHIQELTKGHRWNHVKGTENPADLVSR
GVMPKDLVGLRLWFYGPKWLESFEEYWSRVKHLEVDEPAEELLEKRKNVLVVSASPEPHPLIDRYGSYWKLLRITAYCVR
FVRRCQRRKQPPRTPFLTVGDLKEAKFALVRGVQQEPFAAEIKALANHRLVPAHSSLKLLNPFLDQQGILRVGGRLGLAG
EAYSTRHPMILPSSNVFTRQMAVAYHETSLHSGPRMTLAQIRHEFWPLNGKQLATYTFRNCVRCFRTNPAPVKQPPGQLP
KPRTTLSRAFTVTGVDYCGPVYLKPVHRRAAAQKAYIAVFVCFSTKAVHLELVGDLTTAAFLAALRRFVSRRGLPSEIHS
DNGLNFQGASNHLRELYELLRDNKVITEITSEASRRGIEWKFIPPRAPSFGGLWEAAVKSAKTSLVRVLGQRQLTFEDMA
TVLTQIEAAMNSRPLTPLSEDPDELDVLTPGHFLAGSSLLAIPDPNYTDVPTNRLQHYQQLQQLVQQHWKRWRREYISQL
HNQNQKFPQATQLKAGQMVVLKEDNKAAIEWPLARIVEVYPGPDGVVRVVKLRLPNGAVYKRQSARICLLPFEKDSAVQL
TSAFNPQPTQGAA
>BEL-55_CQ_pep1#LTR/Pao 623-3419 Peptide encoded by some non-autonomous Culex BEL/Pao elements. Not yet similar to other proteins. [Culex quinquefasciatus] 
MDSTTKKKLTDAFRQRYRTERKVIFVQELLLGLYEPTLAQLTVLYEFLVKTYREQSRHHLQVIGLIPDECLAAQEVEFEK
YDALFFEVATALAELQIEAEQTVPSVTTPIAANRQRLQAKAWLKQMLKAWESNQVDIRDSGIETQAPESQEVVLRDCGLS
KPKPLHEQAEVYRKLEAITDRVATSVEEMLLPQHASNGSMPESVSKTISASLNQGPTSYNQCRDVVHQATKPFETRSDPA
VCRVSPGNSRDVAASASPEPLLPAKLCDSLPSGVTSQRRDTQSDTSNERNRKHFVEPPKQDPVSHRVSAGIHEDVAASAS
LQPLIPSNLVDIQVAITTKHDEIVNAEPLLPATELVRDQHNEANHSCVPWDSSPEVTSRLVKVPPVVIHDALVLRSVHPD
GKSSAVFDPSSKPAKPTNPQGHHRANQDGGLIPGKDPLAPSEVKAPDKLEHIHTTPNSQPQTFDAHPSGRQTVRITSRTM
PHSCVPISRHDPVTPTLTGADQSKPEANRCSRIVHSVTAFSTTTVDFYITLKHWNPAKALSQRHACRAMFVTSAPKKRFV
VKAPDRTEDLAHKGSAGRQTLRHENVLQEPRPICIQQPLKDHSKSDFNRSQAPYEFCKPRKRLLRILDDLTTRGAPVEDP
TIVCILTHPWDTGTKSPFIVTAESDQVQPLQQEVVQYSDDEVNQRCVHSDSGPQTKVRIRKHTQNQINRVQPRQMTVPKY
QTLMQTAAKAPDKRELPFPSSVSPGNSAFHVNEQRRLEDLGFIGELEVKCSRSSHSWSYAERGSSNVFVVHQSRKPSHKS
TSNQESSASSPETRPLLIALEPSQPVQMNLVIAILGIQGSCHEPPSQDELFQRTVDRRRRFWHPTIPPDELSHEPKSAQP
SKRRNNFRGIHAVLPAIEDVGERRDPADQSAAIHRKRCVGLTKELRDLNGGS
>BEL-27_CQ#LTR/Pao 696-6109 via tfasty with BEL-642_AA, 1 frameshift. BEL-58_CQ is a deriviative. [Culex quinquefasciatus]
MDELKDLLKQERQLILTINGVGDFVEAYKKAEHENQISIRLDTLEEAMRKFFKVRRKIEAMIDDEDEDEVVGESKEARKK
RLADLVVQREMEYNKALRDVEERYFVVKARLVALRPVKVEPTPGADLNETCFDRSISRIKLPDIKLPNFSGELKDWIPFR
DTYKSLIHSNVQLPDIDKFTYLRSALQGEAQLEILSVDFSAEGYDVAWKALEKKYDNHKLIVKAYLDAIFDIEPLRKESF
GGLSHLISEFETNLQMLKKLGEGTEAWSTILVHMLCARLDHATLRLWESHHNSKAVPKYDVLIEFLRDQCTVLQSIKANR
PSEGDGRQNRSRISTAHTSSQSQRRCLFCGETFHMPFNCSKLRNMSVSQRVEEVNLRRLCRNCLNAGHYADGCSRGSCSR
CGARHHTLLHYDTPAPAGARRGRSSVQNTQNRPPAAGQQQHTRQQGQTQNSSTQPTTSSYPVHQSTSRNTHPPPPTDSRN
STTLNAASLPAQNAPTLSRQVLMSTAVVRVEDQFGNYSLARTLLDSCSEFCYMTSTFSKKLKFRTTPDVLRVQGIGNGSA
TSLKAVRAKIQPRLDTISSFSEEMRFHLLQKISSDLPATPVDVSQLMLPSDIILADPYFGEPGPIDMIIGAEFFLDLLSA
GRRKIVEDGPTLQETVLGWIISGKVPASSPSIPRTATYVSSTVDLKELMERFWELESCHVNSTHSVEESTCEELFNKTTI
RDAEGRFVVTLPKKQRVIEKLGESRNMAMKRFIGMEKRFTTNPALKFMYTEFVHEYLLMKHMREVKEDSGEGPVYYLPHH
AVLKPDSTTTKLRVVFDGSCGTSSGVSLNDALMVGPVVQSDLLSTVLRFRLHRVALIADVEKMYRQIRVTLSDQRLQRIY
WRDNEDEPVKTYELSTVTYGTSSAPYLATRCLKKLGEDCAESHPVASRVIQEDFYVDDMLSGADSIEEASTLMKEVRQVT
DSAGFTLRKWNSNCPELLKRLPKHLKDERSTLEIDPAKTTVKTLGLRWEVSTDMFCFVLPQWKSELSPITKRTVHSDSAM
LFDPDGFLAPVVVQAKIICQQLWRIKSDWDVPLDESLQQLWRDYRMSLMAVATIKMPRWIGFSTDCVEIQIHGFCDASER
AYGAGLYLRCTALDGSVTCRLFLAKSKVAPMENLKRKKKKVNIPRLELSSGLLLSHMYEKVQSILPAAQLFCWTDSMITL
GWLASPPSRWKPFVGNRVSEIQHITRNAIWGHVPGEENPADIISRGMSPALLQYRTDFYEAPRWVVQDRENWPRTQRVSL
ADFDPEILEERVTPAFPTQVRPPHWLFGLCGSYMELVRLVTWLQRSKFNLSPKNRAVRRVGFLKSEELEEAVLFLVRLSQ
EECFPGEMHCLKADGVVHPTSKIARFNPQLVDGVMRVGGRLSNAKISTNRKHPLILDHHHPFTRLVVMYFHERLFHAGQQ
LLIASVRSKFWPVNVHSLARQVIHECISCFKSKPKVIEQIMADLPAERVNPAPPFLHVGVDYCGPFLVSYPNRRAKPVKC
YVAVFVCLAVKAVHLELVFDLTSQAFIAALRRFVARRGKPLQIKCDNATTFVGAKNDLMELHRLFYKQQFQDVVTKTALE
DGIEFSFIPPRSPNFGGLWESQVKSFKTHLKKTFGLQVLKMDEMLTALAQIEAVLNSRPLTPISNDPQDFEALTPGHFLI
QRPLTAIAEPDLEGVPQNRLAMWQNAQRFTQQLWKKWSTQYLSNLTKWTKERNNVAVGTMVLIKDENAPPQKWKLGRVLH
VFRGTDGNVRVVTVRTATGRFDRAFSKVCALPIRDNQELNQSTSD
>BEL-14_CQ#LTR/Pao 1369-6661 via tfasty with BEL11_AG, 1 frameshift. [Culex quinquefasciatus]
MPPKIVPSTSKATLKQLQTKLKSLQSSFNIIEKFKNEFKEDTTANEITVRLERFDELWERIVECSSEVECHDGYVAVEGD
PFTVERLKFEQTYFEVKSFLLDKIKDMQDGSTLDQTTRTADSSFHAVQDHVRLPQIKLRTFDGNIDEWFSFRDLYSSLIH
WKQELPEVEKFHYLKGCLEGEARSLIEPIKITTRNYQVAWDLLLKRYNNSKLLKRRQVQALFKLPVLTKESVTDLHRTLD
SFQRTVQSLDQIVQPADYRNLLLVEILSSRLDPYTRRGWEEYTSTQENGTLVNLTDFIQRRISVLESLPPKLSTGTSESK
QESSQGLRKKPFSVHVSNNAVQSTTQKCQACSESHYLHTCPTFTKMPISNRESLIRSHSLCRNCLRSGHLAKKCQSKYSC
WKCKGRHHTMLCFHAEGAATQNQTGKRVSSDGSGPSTAKPTETSSNSATTDSVSSNAATGQSSSILLATAVVLVEDNEGN
TVTARALLDSGSECNFIAERLYQRLNVSMQKVDVSVVGIGQAAMKSKRRIQAVVKSRTSPYNQEMSFLVLPKVTVNLPTV
SINTTNWRIPDNVELADPTFFHSRVVDLVLGIQHFFNFFQTGKAIPLGNELPRLTDSVFGWVVSGEVSSPCSLTQITCNM
AISDSMEELMSRFWSCEEVGTGNIYSPEETRCEDQYARSVSRAANGRYTVGLPKNEQTWAQLGESRTMATRRLLGLERRL
AQDAALRKQYQDFMMEYLELGHMKKVEAGPANDSPRCFLPHHPVVREESTTTKVRVVFDASAKTSTGLSLNDVLLVGPTI
QPDLRDIVLRSRMRQVMVVSDVEKMFRQIDMAPEDSPYQSILYRFNPEEEIATYELTTVTYGTKPAPFLATRTLKQLAQD
EQQRFPLAAQALETDVYMDDVISGADDVATATELRAQLDSLLGSGGFKLRKWASNEPSVLRGVARENLALPDEIDWDQEA
SVNTLGLKWLPKTDCFRFKFKNPAVTPGQPLTKQLILSIIATLFDPLGLLGASLVLLKMFMQKLWTLQRVDGTRYDWKDP
LPPTVGEEWRKLSQHLGVLNNIRIPRCTVIKGAVDIQIHCYTDASEKAYGACVYIRSKNVERKLARRLLTSKSKVAPLKQ
QPLPRLELNGSDLGADLVEWVIRVLGKRFPVFYWTDSTCVLLWLKKPPSYWQTYVGNRVARIQRITEELGAVWNHIPGVS
NPADLISRGVPPEELEGNEMWEEGPDWDDEEPSSWPAQPDLSGEEAPERRRVVVACVATVEFIDILLSRFSSYISLIRAV
ALARRFSEANVWNVTLKELREAEGVIVRLVQRTTFAEEIEDLLAEKSVSAHSRLRWFNPHIDEAGVLRVGGRLQHSKEPP
GRKHPMVLPAKHRFTELLFKYYHVLLLHGGPTLVLTSVQYWPLGGKDLVRLVIHKCKKCYLAKPTSIQQQMGNLPKARVT
VSRPFSQTGVDYFGPVYVKAGRGRQPTKAYVALFVCMATKAVHMELVTDLSTECFLQALRRFISRRNRPTDIYSDNGTNF
VGAKNVLEQLLKQLKDVSHHEKIARVCELEGIRWHFNPPSAPHFGGLWEAAVRSAKHHLLRVLGENSASFEDYNTLLTQV
EACMNSRPLTALSNDPTDLEPLTPGHFLTGASLQALPEPDYSHIPGNRLNRWQMVQQQTQNFWKRWRSEYLTQLQSRTKN
WQHPKKVEVGKLVVIVDNNQPPMRWKMGRIHELHPGEDGVVRVVTVKTATNLLQRPVAKLCILPSQEEDEEESSAQPEAT
AVEE
>BEL-8_DPu#LTR/Pao 1282-7595 One stopcodon.   [Daphnia pulex]
MSNANSSPNNDTHSPRPPSRAQEMQTEYTDRYPPLENLMQPDQTDHNPPLFDLRPPDRTDEYPLFEDTRALKQARSTEKS
RATRQGNKIISHVRNKKSRTQLKFMRTEFSTTIADCLSIHQQYCDSKEEEDERDDEWTKELGEDAKTIFEIIDRYLARKS
RPPSAVSIGHASQQSLGIQSNATVYPAQPDPPNRSADHHSVSPSSSVSNQDAKALQEERRQREEERRQREEERRQREEEK
RQREQLEKQIQQMKIDEKEKIKKAVEEERERQSSKYTTANQEAVNEAEKRANEIAEENKKIRTALEVQKQKQKELFEAAQ
EKDRLLRLEKKERLESEQKLNQKIQEQQSKIPISSLLKQPYTSFQPTQFEPTRGANPFDNLFQTASNPHRQTEEEPINFK
QWTAHNDNLLSSTKDSTESNHNTRSVFRLPKLDLKPYDGDPKKWPDFIAIFRDLVHSNNSLSSTEKMALLKRSLSEDIRN
GLGDSLSSSALYSEALTELENTYGHPQIVSRAYIQSLIELPKVNNNDYKTLLKFSQTLNGAVSSLKNGGYEHELKASGIL
ELILAKLPAELQSRWGKKIVKSHPVCLTLQDFSSWIHLIVKGEMMAKHCLISPASSPPSSKSNQKPGRQQTDRKPKHPPS
INIIGHKPAALPSTAAKQNDGRKTLTCLLCRGDHRLSSCPKFAALSLEERMKIIKEFNCCLRCLTKGHWTKECFNKTKCN
FEECTAHHHPLLHGAPSLNVSFKDKAKTPKEEKSETQENKKTTKKGVGTHTVEGDSITTLLLTVPVIIEAHGIQVNTVGI
LDQGSQASLILDKISKKLKLDGPTQSSPLATFHGNDPKNKVKCVSFNILTADSSRSFEVKSAYTVPRLQIQTTSLNWPAV
KHQWNHLCDIEPINADTKEIGVLLGRDVLRVHDVLDSRYPADGVEAPDGIKTHFGWCVTGPVATAILHPPLHINALSITQ
QLSDQALHDVVNQFWLTETFGVRPSTSLPSSLDDKAALKILEQTTRHTGERYEVGLMLRDPKINIPNNREVAVRHFNSLE
KRFARNPAFAERYSRVMNEYISLGHAVLLDVNNSIRKGFTWYLPHHGVTNPNKPEKVRVVFNPSARYKGTSLIEQLFKGP
DLLTCLIGVLLRFRQFPVPISGDIEKMYHQVLVPKQQQSLFRFLWKNPGDVGEPKEYQMTVHVFGAVxSPTSCIYALRKT
AEDFGSRFPDVADSVSKNIYVDNYLDSTETEEEAIARLRDVSALLKLGGFNMVQWLSSSRSVLATVDHSDLSRSLDLDAD
KLPIERTLGLLWNCQQDSFNFKSSIKIQAKTKREVLQEVASVFDPLGFLSPVIMTAKILLQDIWRSGADWDDPLPPTLLE
IWMAWAKELSAIASIKIPRCFRLQEKPISYELHVCSDASEVGFGACVYLRAEYPNGHFRLNLLLAKARVAPLRQLSIPRL
ELQGAVLGVRLCDSAIKELGPIAAQVIYWCDSQTVLQWIHSKSCKYHAFVAHRITEIIESSAASQWRHIPGELNPADDCS
RGIPATHLTTQHRWFRGPDFLALPQSSWPSTGVIAEPSSDDPEVSPAKWVGFVQVTNDHPVFNLIQQSSNLHKLKRIVAW
LLRFVNNRHINPKNRQLAPYVKAPELREALRFIIRVDQRHFFDDEFRCLAKGRPVPTASSLANLTPFLDPFGIIRVGGRL
QHASLPEDTKHPIVLSSDSQLSTMVITDTHKLLIHASTEPTLHALRAKYHVLHPRASINRVIRKCFTCKLRNSQPAPPLM
GPLPASRLQTHLPAFTNVGIDLFGPFSVVILRRSVKRYGVMFTCLDTRAVHLEVADSLDMDSFINAFSRFADRRGVPQLC
YSDNGTNLVAGEQEINRALSRWNEAELVQKIEKLKNQPIEWRFSPPVAPHFGGSWERLIKSAKTALRGILNNRSVTEDVL
VTAIVGAEALLNSRPLTHVSVNPNDLEAITPNHFLLLRAHPGCNLDSPPDAKISSRRRYEQAQQLITHFWNRWLREYVPN
GIERRKWLRSRRNLAVNDLVLVVTPNSPRGSWPIGRVVSVQQGPDGFVRSADVRVVRAIPSTSKRRRAASDVTCTTHLYT
RSVHKLCLLEEDEQDVSEDGNRAG
>BEL-14_DWil#LTR/Pao 124-5457 [Drosophila willistoni]
MEELKALVGRRSRLKASITRILDWSERTQTTSTTEVAARMDQLQSVWKEFNGIGDSIALLEDVDGYVDPEVDHVTYEEKY
LKAYSLLLGKKRLVQQQASLSGDGNGAMGLHAYNDDIVHLLQQQQQLFEQLAANQSSSNLSMPARNEMAASGSTSGNNTT
AFVHGGELPKIQIKRFAGLYTEWPAFQDIYESTIHNKRELTNTQKFHHLKTLLVDDAANLVRHLAITDTAYNTAWERLKE
RYNRPRHIVNSFLEKFMGLPTTNKIDVSILRKVSDGTNEIVRGLDAINQTGRDCWIQYLVLEKLDADTRRRWIERSMGNE
APTLEEFFKFLDDRCEELELSKREIAFGGKTPAQITHTKRVTHSMVAVQAGSCTKCQATDHKLYGCQQFMDLTLAERRMF
IREKALCYNCLKSGHMVKNCPSSFSCKYCKGKHHSLIHDPGNSMALRNLQQGKRENQRSPNASHHDLSTTSLVAHNGSAP
ATVCSQSSAKLKTGKGLNRSILPTATVYVQKVNGDYITCRILLDTGSELSYVSERCIQALGLPRSASSILVTGISSVQAD
TTRGSSTLQIKSRYSNNHLTVQAHVLGKITSTLERQNIDASALDVFSDLQLADSEFTTSAPIDVLLGGEHVWSTITGKKL
YDNTGKLIAISSIFGWVISSITMPQANNAFALTSYIDVNASLQRFWELEDISSTTKLEPDDEQVEKHFLATHTRDEKGKY
IVELPFKVTNPEFGDTLQGALNRFQSVERRLQQDANLRAKYVNFMREYFDLGHMRELPPDEVNNXQRFYLPHHPVLGRKL
RVVFDGSFCDTKGKSLNDYLFTGPSIQRDLFAVCLRFRMYKFVFSADIVKMFRQIWVNNKHRDFQRIVWRERPSDPIKHY
QLCTVTYGTSCAPFLAVRVLEQLATDHQQEFPNAAKILQEDFYVDDVLTGSNSEEELIQNRKELIQLMSCANLELGKWVS
NTPRIPTEGTDSTQSSPVKVLGLYWQPGLDTLSYNVGLKGNVDCTKRQVLSDVSRIFDPLGLLAPIVVQFKILFQQLWLL
DLGWDDKLPKQLADNWLKWRADLDMLQHIQIPRLVVNDTDNIELHGFSDASTKAYAAVVYSRVINKDGSISTSIMAAKSR
VAPLKQQSLPRLELCAALLLSQLIRSIKAALRHQKVTVFAWCDSTIVLYWLSYAPSRLKTFVGNRTSEILDTIPRHYWRH
VDSKSNPADCASRGLMAADLKDFQLWWNGPSWIRDADQFMVRLNNSQVCLNISEKNIEKEVKSNCLTALVEATPDHPLDH
LVQRVSSWLTLVHTVGYVLRFLRRTKGPFGDKGSNCLTFEEITAARIVCLRHAQTCFQDDYQLLLANKPLRSRSQLAKLS
PMIDKDGLLRVGGRLHHSQLSTEAKHPVLLPKSHRITKLILEYEHRVNLHPGVSSLFVMVRQRFWIFGARNLIRKVTHDC
LACFRQRHHTSQQRMADLPSIRVTQALPFVNTGCDYAGPILLKDGKGRKPRIGKGYICLFVCLVTSAIHLELVTDLSTDS
FLAALRRFVSLRGKCNKIYSDNGTNFIGAKRSLDEMQKLLASQPHIEKVRNTLANDGIQWVFIPPHAPHWGGKWESAVRC
VKLHIRRVIGKSTLTYEQMRTLLAQVSAVVNSRPLCYNSDTDVNYLSPAHFLIGRPLTTIPEADLGHIPVGRLGYWQSIQ
SMMQGFWKQWHQEYLTTLQQRPKWTTTTPNIAVGDVVLVKESNTPPAHWHLALVLEAYPGKDQLVRAVRLKTSSGELTRP
ITKVAVLPRSETVFQGGP
>BEL-25_CQ#LTR/Pao 621-6023  [Culex quinquefasciatus]
MLYSGLRKKLRYHTPREKFSTPGATPAKTVKQQKQEQAAAREKSKVDESVEAYSQCCQAAQAKVQRVRVAIESAQLDHSK
FNIHALNTYLKTVDTAYAEANEYLNKIYLAAPSRRGEFEPLFVDFEELYEFVRIALCQMIEEHTEAKAALQLAAAQNVKP
LPVPLVQPGTSGIDSMTRFTPTIVLQQSALPTFDGKYESWFKFKQMFRDIADKCAADSAATKLHFLDKALVGKAQGAIDP
QIIRDNDYEGAWRSLTEQFENLPALISETISRLLSLKAMTGDSFNQLKTLIDEVEKCVSSLEFHKLKMDKLSEAIVITLV
SSKLDADTRKVWESSVKRGQMPAYKQLISVLRNQQHVLERCENAKGIQKNRSSHPAARSAQTTAASKAHTAVIQKAASSC
PVCDEKHAVEKCDAFKRSEVKIRYEKAKQLGLCFACLKKGHRTSDCPEKVKCSKCAKRHNVLLHPEEKCAQEKSVPELKP
AGSTESAPTTVAKCVIPCRATEPPTQVLLATAVVYVYDDNGDQHKCRVLLDSGAMANFVSQRMADLLQLKKRCVNIPVIG
VSGMRTMVKFQVHVRAKSRASASEFCLDYLVVPRVTGALPVQKVHIDGWPIPAGMDLADPTFFEPSRIDLLVGAEAFFEM
LLSGKIKMSSDLPVLQESTLGWLVSGRVAGSAAVTTVRACQAISAPDVDAELTNLLKKFWTIDDQTVEPKPDDDDCERHF
SETHVRAADGRYVVRLPFRKEIEELGASRQQAEKRFNHLERRLDQNPAQKKQYSDFIKEYVDLGHGRVLAETECGTQDGY
FLPHHCVLRPDSSTTKLRVVFDASARSTTGHSLNDTMMIGPPVQDTLFEILLRFRLHKYAFTADVPKMYRQVRVSPEDTK
FQRIVWRDDRSKPLQVIELMTVTYGTAAAPFLATRALNQLAADEKEDYPEASKVVSSSFYVDDVLSGAATIEKAKQLQSD
LVALLARGGFELHKWCANDAALLEDIPIAKQEKQLDFENHDAKDTVKTLGLLWNPVEDHFFFRVKPLDKDRDNWTKQQVL
SEIAKLFDPLGLLGPTVALAKMVMQETWRSGIGWNDVLPPPLMARWRKLRNALAELAEITIPRRVTTDDARSWELHGYAD
ASAKAYGCSIYLRNVMVDGTEELFLLCGKSRVTPVKEAERKQKDDAEPADMTMPRLEACAAELLAEQIVKVVKAIDIPID
RVVLWSDSQIVLSWLEYMKPGTPVFVRNRVNRIRELTSKYEWHYVSTKNNPADHISRGLLPKQLKKCGLWWKARHTENLG
PIVMLCEKMVPDGNRVLEVISDCGSFRKLERIFGYVLRFVGNCKKKLEDRRCGRLGREDYCAALQAMVKAVQQEEFSEDL
KRLEAGKPLNNKLNKLNPMVEKDSGLLRVGGRLSNSDLPYNQRHPMILPEKHHLTELIIETLHTENLHVGLNGLLASLRR
RFWPVNAKRAIHRVLRRCVTCFRVKPTDTEQFMGDLPKCRVTVAEPFARTGVDYAGPVMLKQGRLKAPVKGYIAVFVCLC
TKAIHLELVTSMSTEAFLAALHRFVSRRGNVSEMKSDNGTNFIGAARELTELAELLRSQMLERKLDEFCQARSIDWSFNP
PKAPHQGGLWEAGVKSAKHHLYRVLNESHLTYEEMNTLLIQIEAVLNSRPLCQQTDDPLDYRALSPGHFLVGRELTALPE
PLYDGLKENKLTRYQLVQKRKQDFYRRWCNEYLTELQQRGKWNKGASVVRKGMLVILKQDNVPPQQWRLGRIVDTHPGKD
GVTRVVTVRTSSGEYRRPTTQVAVLPILDNETQELEETTA
>BEL-19_DWil#LTR/Pao 86-5728 [Drosophila willistoni]
MWQWSKQQLGRIDSWKSQTLRDVHFAIYLKFVTETLIKRQLRTFKGLNYNNAEKAEHEQAISKELGANALLRVCEFLDIG
VGEKETKNDLAAKIVDAISFVSTGDSDGSNAIVLEQRLVILEQIENVDTAYVDVKRKMCEKETKLINNKRILSEADNNPT
ANSEIDLTSMHNEILIVQRELELLQAEEEALVSKKNVLKAKVALTDCSSRMSERFETSVRNERTSMWVRSQSEECQNNLD
ETNNPSMATRAMNQMLARQSLNSKHLEFDGSSALNWTHFIQEFNATSKHCGFSKEEDVQRLSKALKGVAKEKVSLLLISA
KDPDKIISILDKAYGGAENIALELMSRACQVKPVNNIDNFEEFNNTVQNISSALEYTDNRLIDTQRLLAMMIGKLSENYL
REWGAYLRDANVRASFCTFDKLAEWAQRQADLIQDVSFFKKVTSINQQSSFAEQYKVTQSQPQEIEAVNQPKPKSKAICF
ICSEEKHPLTKCNVFLKADIKKRWDLANRNKACYSCLKFHKSQCSERQACKIDNCEKFHNPLLHKRPIQVNLAATTNVTG
CVSDSPKSALLKMVPITVHGEKGSKETVAFLDDGSTSTIMEMSLAREVGIKGDAKPFCFTWTGGVYRYEADAESATINIS
GKNGPKHQLNGVWLVNDLKIPTQQLDYKKLTEFVPKNMVDYTKLQDRQPMVLIGQRHAKLITARAVIDGNEHRPMLSKTK
LGWVVHGPAQTNLQASHFTCCQIEDVCLQQMIKQQFSIENFGACTIKIDKTRSVDERSAIAKAESSINQKGNFYEIGLPW
KSDDIKLPESKSMAFQRLKCLERKLLRDKDTAEAYKNEITKLLDKGYAVQLTDINVLNSPKLWFLPHFAVINPNKPGKVR
LVFDAAATCNGTSLNSNLLTGPDWSTSIIGILIRFRLHAVAVVADIREMFNQVSITECDTAAQCFLWRDLDQKREPSIFQ
MKAMLFGTTCSPFLAQFVKNYNASKFRDEQPDAVKAILENHYVDDYLDSKPSAYEVINIINAITKIHSKAGFELCQFISN
SDEVMQSIPKTLRANKSTAMIGEKMDVQQKVLGVLWDAKGDFFTYSTTVMHKVTDDLLSGKVTPTKRNVLSVVNSLYDPL
GLMTPVTIKGRILMRDVWESGIGWDDQIKGDLINKWRNWIKALISIEGTKIPRCYSSNLNNADRVEMHIFNDASAKAYSS
VAYIRCSYVKEDKCQFDVSLIASKARVSPIKHITIPKLETMAAVLGCRLAEMISHELQINIDQRYFWTDSRTVLTWINSD
KRMDVFVANRIGEICEKSVRSEWRWLSTNENIADVITRDNISEHKLHWWLTGPEFLQRPESTWDLQKPIIEEYDQTGVVM
VLQEMEHPMDILIQRISGYNKLIRSTAWIGRYINNLTKRLKGNRKLNELSVGEIEWAETVWWKVVQQQLFQDDLISLRTG
KPSSKLRLSKYCVYLDDNGIMRVDSRIERAKEVSTYTKSPVVLDGKHIFTRMLINKIHVDAQHVGTQVVVHQFRKAYWMP
KLNRIIRTTINACVWCKRKKAKPQTPKMGFLPEERFFTHKKPFTATGVDYFGPFYTKAERGTRASKHLRKRYGVIFTCLT
TRAINVEIAHSLDTDSCIMAVRRMMARRGPIQIIWSDNGTNFRGAARELQEALEDLDECAVKEYMASIKIIWNFIPANAP
NFGGCWERLVGCFKRAIEAILTVNANPSDETLQTIFMEAEYLVNSRPYILESDDPDDELGLCPNDICIPQSCILLGPGNF
TPNTMEKRAWRISQYQIDSFWKRFIKEYLPTLIHREKWHKDVPNLEVDDIVVMKDNTPRGEWPLGRVMKVFPGEDGVVRV
VELKTAKNTYRRPVNRLCKIGVKRYDEKDRAQKRDSALGAA
>DIRS-30_NV_pol#LTR/Ngaro 1395-2922 via tfasty with LvNgaro1_pol, 2 frameshifts. [Nematostella vectensis]
PTPVKSDRLIKLLTGYEPSLVQQLHSGFTKGFPLHFEGERVSFEAKSVDSKIGKELEMGRLAGPFDFPPFPVFRLGAVPK
KAPGRLIHHLSFPDGDTVNSGISSDNTSVLYSTISDVIQLVKLVGRGSFLAKTDIKSAFRIIPIRPEDNHLLGIKWRDVY
YYDRCMPMGCSNSCKTFETFSIAIQWIAQSQFRITNMLHLLDDFLIVAPSAELCQRQLEVFLDLCAYLGIPMAPEKTCGP
SPTLSFAGIELDTIQMEARLPQDKLDKCITLITEFLRLKKISLRELQSLVGLLNFACSVVIPGRAFLCRLINLTIGIKAA
HHKIRLTKAAKEDLNVWLVFLSSFNGCLFFLDGYWSNSQKLRLYTDAAGSLGFGAIFGNEWCYGSWPSSWLDKNIATLEF
YPIVLGLQLWGHLMQNKCVLFFTDNEALVHVINKQSCQDKSLMFFVRKLVLICLQNNILFKAKHIPGVQNTLADRLSRLQ
MDAFKRLAPDSMNTTPVDIPQEWLPQNWQL
>DIRS-27_NV_pol#LTR/Ngaro 293-2398 [Nematostella vectensis]
MSLPLASPSHAGAQQRVAPLLTPQAIVSGPAAPAGTHEAGEPEVTAGADQSATELARFNAPISAPVEPLADVLSSTPARP
LTDVPNLATLRKLRRDRAVLPNEFLFTTSKGTLEYDKLDISEFVGGFLECIKSKSEPERPTLVAHLQLLMEKAASYSWSS
VRNFHFSISSAIEAGRLTWNDATVIRDRAQIAFTHADLRSASQSAPRNGISSAAKAKKELYCKDWNHTGKYFCPPTDPAY
KSVLLCRVCDANHSMLSCAKRRFPIPNTGPVVVPGGKREGHSINDGIPKDSYLGDQYQLQLPGVDRLVDFVNRLGRGCHV
FKKDLSRAFRQIPVDPADYHNLGFQINDKFYFHTSFPFGLRTASLACQRTTKAVVYILNTMGILVDVYIDDFYGAAMPDV
SQDEFNRMNSVFDELGLAASAAKDVLPCYCMTCLGVEIDTLDMTLTVPQFRVTELQGELNEWLTRTLYSKRDLQRLLGKL
SFITSCIRPGRVYMCRLLNALRAISSRHSKLHVDDELRADIHWWLYLLRHYNGVSVIPSNITVANPELFASDACLTGCGA
VCFGEYFRCPFPPRVLSKQLHINELELLTVVLAVRLWATKLQGLTIELFVDNTTCLYAINNNSSASSVLQLCLRELWFYL
ALHNISLCARLVPSRLNFVADQLSRSHADFNCRAQFNEYAELHNLFELEIPDCYFDFVAAS
>DIRS-38_NV_yr#LTR/Ngaro 364-1403 via tfasty with DrNGARO1_yr, 1 frameshift. [Nematostella vectensis]
CSGVILLQKCGISFVCHILDDFLIIEPPSHFPPSSSLCSQSWSSMLLAFKKLGIPVAAHKTESKFHLNFEFCSLYRVLHF
AANEETLIHYVAYLVKTLKYTSIKSYVAAVRHLHICQGYDLDLKKCIRLQLICRGIKRSQGTSTKTRIPITINHLKLFFQ
LLAIPTTNNYGSIMLWATMSLAFFGFRLGEMTCNSAYFPEVHLSAEDISFLPSDSMSVQVKESKTDPFRTGQTIIICKTG
QRLCHVTAMQTYLKLRGTSSGPLFQYPSETPLTKTNLTSETRQLPSMSCFEPSKYAGHSYRIGAAITAASVGLSPWLIKL
LGRWSSDCYERYIRCPHFLLLGVSRQL
>LvNgaro1_gag#LTR/Ngaro gi|46194155|tpg|DAA01766.1| TPA: putative gag protein [Lytechinus variegatus]
MPKVKAKKITTAGARKGDDTPKRRPGRPRGPRATSTPASVDLGLGGGNNGPGRSGELNPSQSQVVDVDEKSGRPRSKVSD
KMAELDLDLVGREGQAPVGRSIAWHEIVAQESDTGSSGQAQPAVSVPARSAGVAEDLGLDLVEVGVERSEPQAPRLSAVL
GAPEPFSSACDPLGVEVAISLKEKIWASEYIDLGVLLKHNNARDEFGALSVGDTTLSLCQSGSGLGLQLQPQSKAKKIMS
VEQWTSVFLVFASIYAEKHIERSRELMKYMDLIRHAARAFAGYGWRDYDTQFRSKQARLPGRSWASVDAELWLMLVASNG
PRQRHNLPHAPRHQFYRGEYGARKSFPFGGKGPGANGTPSRGVCFAFNRGKCMRGKACIYEHKCSRCQATGHGAKQCSQG
RAGSSPAGSK
>DIRS-41_NV_yr#LTR/Ngaro 1557-2517 via tfasty with LvNgaro1_yr, 1 frameshift. [Nematostella vectensis]
MPYHYPCTSVTTKLVNIVSKLIKSSLQPSSVPTYRRAWNLFHLFLSSIFQHAVVTLPISPSRMALFIAYLYDKNYAPSTV
NTYVSAIGYTHKLYQLPDPSKAFFVLQLLRGYNKVVFRMDARLPITLSILHKLFSASPHVCSCPYQTARFKAMCALAFFA
FLRVGEIAWTSNNCVSVLQLHNLVTLVDTAKSSVYGLKLTLWDFKHRYNQTPFSITISRQQHPCPVDIILDYLRMRGSRP
GPLFITMSGGTVSRDNFCNSLASVSNFCGLDSSRYKGHSFRIGAASHAAEKGISETQIRLLGRWKSNAFLKYIRVPSLAT
>DIRS-23_NV_yr#LTR/Ngaro 3146-4159 [Nematostella vectensis]
LIRSLFLADSSALASLQKDLRQTLQAAYSTGTYSNLKTQFKAFFLFCLYFDLTPLPADIDTVCLYVQFLSRSIAPPSIRN
YLSGVKLLHLFAGYDYAFTKDFSLSLALRGVSRRIPHVPQRAPPVTPSLLLLVARTVDFQHDANSSTLYCAFLFAFFLMA
RIANIVPLSIKAFNPTRDLTRGDVLCNEHGLIVTFKHTKTIQFGQRRLHIPLLRIPGSLLCPVAAYNNMIRLVPASARKP
LFLLLGHSGPFALTKSRFVTEFRLALCSVGVAHADSYRGHSFRRGCASWAFNHGVPGELIQLYGDWASDSYKLYLEFSNQ
SKLALASQLRASIQASS
>FIV_env#LTR/Lenti gi|59290|emb|CAA40321.1| ENV [Feline immunodeficiency virus]
MAEGFAANRQWIGPEEAEELLDFDIATQMSEEGPLNPGVNPFRVPGITEKEKQNYCNILQPKLQDLRDEIQEVKLEEGNA
GKFRRTRFLRYSDEHVLSLVHAFIGYCIYLGNRNKLGSLRHDIDIEAPQEEYYNNREKGTTDNIKYGRRCCLGTVTLYLI
LFIGVIVYSQTAGAQVVWRLPPLVVPVEESEIIFWDCWAPDEPACQDFLGAMIHLKAKTNISIREGPTLGNWAREIWATL
FKKATRQCRRGRIWKRWNETITGPSGCANNTCYNVSVIVPDYQCYLDRVDTWLQGKINISLCLTGGKMLYNKVTKQLSYC
TDPLQIPLINYTFGPNQTCMWNTSQIQDPEIPKCGWWNQMAYYNRCKWEEAKVKFHCQRTQSQPGSWRRAISSWKQRNRW
EWRPDLESEKVKISLQCNSKKNLTFAMRSSGDYGEVTGAWIEFGCHRNKSKHHSEARFRIRCRWNVGSNTSLIDTCGNTQ
DVSGANPVDCTMYSNKMYNCSLQNGFTMKVDDLIVHFSMTKAVKMYNIAGNWSCTSDLPSSWGYMNCNCTNSSSSYSGTK
MACPSNRGILRNWYNPVAGLRQSLEQYQVVKQPDYLVVPEEVMEYKPRRKRAAIHVMLALATVLSIAGAGTGATAIGMVT
QYHQVLATHQEAIEKVTEALKINNLRLVTLEHQVLVIGLKVEAMEKFLYTAFAMQELGCNQNQFFCKIPPGLWTRYNMTI
NQTIWNHGNITLGEWYNKTKDLQQKFYEIIMDIEQNNVQGKTGIQQLQKWEDWVGWIGNIPQYLKGLLGGILGIGLGVLL
LILCLPTLVDCIRNCIHKILGYTVIAMPEVEGEEIQPQMELRRNGRQCGMSEKEEE
>EIAV_pol#LTR/Lenti gi|9944518|gb|AAG02702.1|AF247394_2 pol protein [Equine infectious anemia virus]
TAWTFLKAMQKCSKKREARGSREAPETNFPDTTEESAQQICCTRDSSDSKSVPRSERNKKGIQCQGEGSSRGSQPGQFVG
VTYNLEKRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGKKYQGTGIIGVGGNVETFSTPVTIKKKGRHIKTRM
LVADIPVTILGRDILQDLGAKLVLAQLSKEIKFRKIELKEGTMGPKIPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNN
PYNSPIFVIKKRSSKWRLLQDLRELNKTVQVGTEISRGLPHPGGLIKCKHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSI
NHQEPDKRYVWNCLPQGFVLSPYIYQKTLQEILQPFRERYPEVQLYQYMDDLFVGSNGSKKQHKELIIELRAILLEKGFE
TPDDKLQEVPPYSWLGYQLCPENWKVQKMQLDMVKNPTLNDVQKLMGNITWMSSGVPGLTVKHIAATTKGCLELNQKVIW
TEEAQKELEENNEKIKNAQGLQYYNPEEEMLCEVEITKNYEATYVIKQSQGILWAGKKIMKANKGWSTVKNLMLLLQHVA
TESITRVGKCPTFKVPFTKEQVMWEMQKGWYYSWLPEIVYTHQVVHDDWKMKLVEEPTSGITIYTDGGKQNGEGIAAYVT
SNGRTKQKRLGPVTHQVAERMAIQMALEDTRDKQVNIVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVP
GHKGICGNQLADEAAKIKEEIMLAYQGTQIKEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIRVPPNSFGWVTGKSSM
AKQGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENKISQRGDKGFGSTGVFWVENI
QEAQDEHENWHTSPKILARNYKIPLTVAKQITQECPHCTKQGSGPAGCVMRSPNHWQADCTHLDNKIILTFVESNSGYIH
ATLLSKENALCTSLAILEWARLFSPKSLHTDNGTNFVAEPVVNLLKFLKIAHTTGIPYHPESQGIVERANRTLKEKIQSH
RDNTQTLEAALQLALITCNKGRESMGGQTPWEVFITNQAQVIHEKLLLQQAQSSKKFCFYKIPGEHDWKGPTRVLWKGDG
AVVVNDEGKGIIAVPLTRTKLLVKPN
>FIV_gag#LTR/Lenti gi|59283|emb|CAA48157.1| GAG [Feline immunodeficiency virus]
MGNGQGRDWKMAIKRCSNVAVGVGGKSKKFGEGNFRWAIRMANVSTGREPGDIPETLDQLRLVICDLQERREKFGSSKEI
DMAITTLKVFAVVGLLNMTVSTAAAAENMYTQMGLDTRPSTKEAGGKEEGPPQAYPIQTVNGAPQYVALDPKMVSIFMEK
AREGLGGEEVQLWFTAFSANLTLTDMATLIMAAPGCAADKEILDESLKQLTAEYDRTHPPDGPRPLPYFTAAEIMGIGLT
QEQQAEPRFAPARMQCRAWYLEALGKLAAIKAKSPRAVQLRQGAKEDYSSFIDRLFAQIDQEQNTAEVKLYLKQSLNIAN
ANADCKKAMSHLKPESTLEEKLRACQEIGSPGYKMQLLAEALTKVQVVQSKGSGPVCFNCKKPGHLARQCRDVKKCNKCG
KPGHLAARCWQGGKMNSGNWKAGRAAAPVNQVQQAVMPSAPPVEEKLLDL
>HIV1_gag#LTR/Lenti gi|23867860|dbj|BAC21030.1| gag [Human immunodeficiency virus 1]
MGARASVISGGELDRWEKIRLRPGGSKKYRLKHIVWASRELERFAVNPGLLETSKGCKQIMGQLQPFLQTGSEELKSLYN
LVAVLYCYCVHQRIEVKDTKEALDKIEEEQNKSKKKAQQAAAQQAAADTGNNSKVSQNFPLVQNLQGQMVHQAISPRTLN
AWVKVIEEKAFSPEVIPMFTTLSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRG
SDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQALQEV
KNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQATNPGAIMMQRGNFRNQRKTVKCF
NCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCNERQANFFRENLAFPQGKARELPSEQTRANSPTRREFQGRDNNSLSE
AGDDRQGAVSFGFPQITLWQRPIVTVRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQITVEIC
GHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
>HIV1__env#LTR/Lenti gi|9629363|ref|NP_057856.1| Envelope surface glycoprotein gp160, precursor (Picked two of the many env seqs in genbank) [Human immunodeficiency virus 1]
MRVKEKYQHLWRWGWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPN
PQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFN
ISTSIRGKVQKEYAFFYKLDIIPIDNDTTSYKLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCT
NVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTI
GKIGNMRQAHCNISRAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTW
STEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWR
SELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIE
AQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNHTTWMEWDREINNYTS
LIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTH
LPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLL
QYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERILL
>LvNgaro1_yr#LTR/Ngaro gi|46277180|tpg|DAA01768.3| TPA: putative tyrosine recombinase [Lytechinus variegatus]
CTISISDAEVPCVSTGGRPGGRGGSSPSLEELAIERSRLLMASRAARTHTTYSIALGAYVKFCKVYGYDPQLPPNVEWVA
QFISYLSFMGYAGSTIQTYISGLAFYMSSSGLKDVTKSFVITRLIEGCRRSTLRRDARHPITLSVLNRMLAYLRHVCGSH
YDVLMYSAAFSVAFYGLLRVSELTVESRHRCESILQHTDVRVTGDAPHRRVELFLRKSKTDQRGNGCTISIPELGTVSCP
VMAVIRYLEIRPKNGGAFFCSYGALPLTRREFGNMIKRCLTYGDMPAAMFSSHSFRIGAATTAAMAGCSDEEIQRMGRWV
SSAHRRYIRLDMVK
>BEL30_DR#LTR/Pao 533-6460 [Danio rerio]
MSSPTENTDNLSEAPEVRSSSRERTFTEKGQQLHDQEARKNEKAFIKAYDCWKLIAKEVRVKLKAFCSAEDLDKMQTDVK
SKLAIVRQTYEPIRRNHTTTPNIVKKMDACDTLTAEICDLVSERMENIDEAFNDQLEKERVRMVLNKEEYGSVFGNTKTE
TVISELSQESDHNSSTTSRSSSKHADAEADLAAKVEQAKAMQEIHIQQAKLDKLESEWKLKETQMLAEIQKKEAEMKVKL
EVEKTRLQQLQADNEVKVAAARVRAYNNFDGHESLEEDTDHKTQYSCQDATLQTPLNPQALPFQPHTAHFKTPMPQEEVS
LAQAIASSLTLSRLPVPEPTTFTGDPLKFIDWKISFMALIDQKPFPASEKMLYLKSYLAGEARKAVEGFFYRNSEEAYQG
AWAVLQDRYGSPFVVQRAFRDKLMKWPRIAANDPIALREFADFLQGCAEAMPHVKGLGILNDCEENHKLLKKLPEWMMRR
WSRIVVEELDRSGEYPSFVHFTQFMQTEARIACNPIASPLLMNVKNTDERLPKRTKALNTGIQIKTSISGPPENYRPKPP
CLVCKDETHGVVKCPSFAAKTMDEKKSFIHENHLCFGCLRKGHNTKDCRRRHTCNTCGRRHPTCLHIEMDRNPLESTSKD
SKATGGHSSKEIHKVMVHALTQHVSATSSIVPVLVSSTTNPQKEILTYALLDTQSDSTIVLEDLVTELNVNTQSVQLKLG
TMTAVNTVIASKVACGLQLRGLNSETYIQLKQTYTRDFIPVEKSHIPTKATALQWPHLKHLMNKLHPLQDCEVGLLIGYD
CPSALAPLEVVTGNENEPFAQRTTLGWSIIGSANPHLDRCGNETFVHRVTVKEKPLAIDVLKALESDFNERSYEEKYVSQ
DEVRFIQLLNEKIKQKGDGHFEIPLPFKGSSPPILPNNKKLATVRLQHLKKKLMNNKQYFDHYTAFMEEILKIGDAEPAP
PFSDDETVWYIPHHGVYNPKKPDKLRIVFDCSAKFRGISLNDTLLTGPDLINPLLGVLCRFRREAVAVICDIERMFHQFS
VSPEVRNYLRFLWWEGGLFEREPQEYRITVHLFGAASSPGCANVCLKYLAQQHKVNYPAASAFLENNFYVDDGLTSVPTV
KEAKKLIVETQELCKGAGLRLHKFNSNQSEVLSCVASSERAVNTDPLNLKPYPAAGAHILGIQWSSENDTFSFNTSVKDH
SPTRRGLLSVIASLYDPLGFVAPFTLSGKHILQELCCRGIGWDDPIPENLRSRWEEWKNGLQRLKEIAIPRCYYPQNFGE
IVRVELHHFADASNAGYGSCSYLRYQNNRNEIHCSFVMAKARVAPTKITSIPRLELSAAVTAARMSVMLKAELEMKIEQE
FFCTDSQVVLAYINNEARRFHVFVANRVQLIREITDPNQWNYVDTAQNPADHASRGLHASAITSSSWLSGPEFLWEQDVH
PMPKPSTELLTGDPEVKSIQVLSTQISDRKDILSRLSRFSTWTMLVKVVARIKRLGSKLKHHGEIVTVTERRKAAEMLYQ
LVQQQAFPQELKALQENFHGSTILSSSPLFRLNPILDVGLLRVGGRLTGSTLSSELKHPIILPKDSHITNLLLAHYHAQV
CHQGWSQTLMELRANGFWAIGANKSVSKLIHRCVKCRKLRRPTEEQQMSELPRERCEVSAPFTFCGMDCFGPFVTKRGRK
EYKRYGLIFTCLSSRAIHLEMLDDLSTDVFINALRCFISLRGAVSHLRCDQGTNFVGAKNEFKEAPKQCDTEALKAFLAD
KQCEFTFNAPSASHAGGVWERQIRTIRSVLNVTVAQCSGRLDDASLRTLFYEAMAIVNSRPLNVDGINDPMAPEPLTPNH
LILMKSKVALPPPGKFVKEDMYAVKRWRRVQYLTEQFWSRWKKEYLMNESTRQKWHVPRRNLKVNDIVIIKEDSLPRNQW
QLGRVVETTEGSDGLVRRVKVQAGERKLTQKQTHCSKPTIIERPIQKLVLLLEDE
>BEL29_DR#LTR/Pao 226-6342 via tfasty with CATCH3_DR, 1 stopcodon. [Danio rerio]
MDEKEESGCEMAADVDGEKVVSENVANDDGVANEDVSSKRVRKLTAKGVTLLFENLQKSRKQNLTQVNKIKQNVNDIISL
KTTSETVLNVEKQMKKFVKYCEKAEDLHNAIVEMPIPQDEFDKQTKWFNAKMAENLCFKKEITEWLTDAGKSWSVDKACD
ASSAVSSDIGPDDSISNVSTNQSQRSKVSKGSASTSSMTSSARIKVMAEKAALLQHAAAMEKRHLLEEEEERLHIQSEKL
KRQKEQLMLNAKIAATDAKLSVLKTSEVGSNKKAPSDDSKSKKSHSLKSDLQVHLPGNSTQVAMHCTTTQQAASIQDGTA
GVQSNPVSYSQLQDHSSQSHAHLQTDTGQSILYNIMQQQANITAQLVHRGDVTPLPPRIIPIFDGDPLQFAAFIQAFENG
IERKTTNAQDCLFYLEQYTRGQPRELVRSCHHMSAEQGFCKAKNLLKEHFGNELKITAAYMERALNWPLIKPDDISGLQA
YALFLRGYCNVMVNLQYMDEINVSSNLKNVMMKLPYRLREKWRTKAYELQERNGCRLKFTDLVDFIEHQVKILTDPLFGD
IKDTQAPISHKAKVKSVPFSGRGQNAATVAVVNTVEGFQSKVIPSQDSFSSCYACKKPHVLEKCPEIQKMTHRQKIDFLK
THGICFACLKFGHISKRCTNGQICSMCSQKHPTILHISAKDKPIEEKQVSNALVTLQTYAHIGAGEQDCSLSIVPVQVKS
KLGDFTVTTYAFLDPGSTATFCTEGLMRKLKMIGTKKRILLRTMGHENVVNTSVLTGxEISGLSDGKFMDLPEVLTQKTI
PVSKDNVLDPEDLRKWRYLDDVKIPKLDAEVELLIGTNAPKLLEPWEIINSEGQGPYAVKTLLGWVINGFVKEANDRRKI
GFQSVTANRISVTKLEELLVAQYNHDFGEKSSEDDFKMSREDQRFMEIMEQSISIENGHYCIDLPFRKNDVIMPNNRCLA
EQRLKGLKRKFSCNQEFQKEYTAFFADVIDKGYAEAVPQDQLLRDDGKVWYIPHHGVYHPKKKTIRVVFDCSAVFKGVSL
NSQLLQGPNLTNTLLGVLTRFRQEHVTLMADIQAMFHQVKVSQKNVDFLRFLWWPNGDITKSFKEYRMKVHLFGAISSPT
CSNFALRKLAENYKDCFPAKALNSILHNFYVDDCLLSVPTEREALQMVKDLTAVCSKGGFQLCKWISNSRKVLANIPEEC
LAKSTKDLNLDKDNLPVERALGLYWCIESDAFMFKIAVSERPHTRRGVLCIVSSIYDPLGFLAPLILPSKLLLQELCKRN
IGWDSEMPQTLSRQWSEWLQDLNKITMVKVDRCIKSKDFGMIRTAQLHHFSDASQCGYGTVSYLRLEDETKKVRLSFMLG
KSRVAPLKQITIPRLELAAAVLAVRIDLMLRKELQLDLDKSVFWTDSQTVLKYIANDAKRFHTFVANRVSVIRDATDVEQ
WRHIGTRLNPADDASRGMSIENFLKSSRWIQGPDFLLEASEEWPLSSFDQTLMNDPEVKRDTVVNAAISNCPDSATHQLL
NYFSDWTKLKIAVAWILKFKDVLLKLKQQRKCIQSSFNSGTNNSTVEQNKVDEEMKRFRTGFFGQNLTPDDLSRAESAVI
GFSQREAFKKEISSLQSGTSGVKRSSNLYKLDPVLIDGLLRVGGRLSRAAIPEETKRPVILPKEHNVSKLIMQHVHRQLG
HAGRNHMLSTLRKRYWIINANSACRKVISECVVCRRFQGKVGEQKMADLPKERITSDLPPFSNTGVDYFGPVDVKRSRSV
VKRYGVLFTCMASRAVHLEVAYSLDTDSCINCIRRFMCRRGQVLQLRSDNGTNFIGAEKELRNALKSLDHDKIQRTFLSE
GIKWIFNTPAGSHHGGVWERLIRLVKKVLHSTLRQQCLDDEGFHTILCEAEAILNDRPIIKLSDDPNDLEALTPNHILLL
RSKPCLPPGLFQKDDLYIRRRWRQVQYLSDLFWKRWIKEYLPLLQERQKWRKPHRNFNVGDIVVIMDPTAPRGSWSLGKI
TQTYPDKKGFVRSVQLKTKTGLLERPVSKICLLLEKTMD
>BEL-2_DGri#LTR/Pao 359-7513  [Drosophila grimshawi]
MASEKRTINELLDVQQDISDEIVRLISNYKKDSAERKSQAGYHKIKADSLNERWNIVQENDEVIRKSGELPKNHEYFTYY
EDIRTTVLKYLEVIKNDAETINQATSKKLEIGDGQRQQSTLEPKVIALCRRQRAMIASLHRTLHQSTPIEHAALELIRNL
WTQIQEVHFRLYEEVENPEENGYDTKEYLQAEEDVQRALALKSIKQCTNDINLPRITIPKFDGDILKWTQFFDMFVSMVH
GTNMPTIQKMWYLKTSVIGEAERLIRQIDLKEDNYLHAWNMLVDAYHNPRDIASTVLNRFLMQQAINDNTKSLKELYIVT
LESLASLKGLGLDISTWDPILIAVIRNKLDSTNKTLYEQSLSNSKQIQKLDTMLQFLEQRVRVLASGSKTHSNAKRDSMG
ATCASSSTTRKNCLYCKKADHIIFRCDVFRAKTAAERLNWIQRQKLCVNCLKGDHMAKVCPSRFKCFKCQKRHNTLLHLE
NSSLEQQNPIVASASSKNINLLATAKVIVQGNNGQQATFKALLDSGSQINVISERLASLLSLKRHDSTLRIEGIGRQQRT
SRARVNLLVKSLYNDFTMRIEAFILPHIITDQPSQSINNKDWNMPATLPLADPQFNKPGKIDMLIGAEHYYALLLPQQHK
IPSGPIMQKTKLGWVVAGKIKESKTSAAICAVATGEETNTIMERFWTLDNFETAERHRTPTEKECESHFIENLQTAADGR
FIVKLPFAEHSSALGPSLETAEKRFLALERRTDSKIWKAYVDFMTEYEQLGHMKAVPRKLLPTNHYFIPHHCVLKPDSST
TKLRVVFDASCKTSTGKSLNDILQVGPTVQSDLMSILLRFRTHKYVFTADIEKMYRQIWINPEHQFNQMIVWRKNPNDEL
KYFRLKTVTYGTASAPFLATKCLNHLASLHTSRSPLGSSALRDDFYVDDCLTGADSIQEAIQIRQELVKILLPNGFKLRK
WCSNNEQILQGIPKDDIVSDIKLDETLEHYSVKTLGLIWMPKRDQLCGRTQSSTAKRITKRVICSELAKIFDPLGLFAPV
VVKAKIFMQRLWESKLDRDDELPANLQNEWKDYREDLQSLNSMQIPRHIYDGNTPVTKELHTFVDASEQAYGAAIYVRAT
YKNKQISVRLLCSKSRVAPTAKQSLPRLELCAALLGAELADRIRRDLNLDSTTVPGYFWSDSTVVLSWINAPSSTYHTFV
ANRIAKIQAVTSQNNWRHVSSANNAADVLSRGISARKLHKHSLWLYGPLFLHGTPDKWIAPPVISPSNLERKTKHISLAA
TQPTIGEELYTCRHSNSFRKLQRIVAYMLRFCYKRYRSATTTLCKMELDCARNIILQTIQRAEFTAELKDLKRHNTVDKK
SPISSLSPIQGSDGLMRVGGRLEQAPLPYNARHQILLPYNDPIVKMILRELHEDNMHCGAQALRATARQQYWILNDKTMS
RNIVHNCVKCNKAKPKLMNQIMGNLPVDRVTPTRPFLTTGVDYCGPIWIHHKVRGKRPDKAYIAVFCCFSTKAVHLELVS
DLTTNAFLGALRRFLSRRGKCQTIYCDNATNFVGANNQLKELGESIFGEKAQAEIINHCNKKQVAFKFIPPRAPSFGGLW
EAAVKSAKRLLVTTTNTASLTFEELNTVIIEIEAILNSRPITPMSNDPTDNTALTPAHFLIGETLTAPPDVNTDRNEKSL
LKRWELVSRLKQGFWKQWSQEYLQELQARHKWKAVNPNIKEGMLVLVKEDNIPVMSWPMGRIVHTYPGQDNHVRVVDVKT
ASGIYKRPITRLAPLFPEDMAKKRPIKETEDTDKNDAPPVQRKRLTSPTITSSVLILLFMLPLVLTNSVSVTRFNTKPGI
YYEKIGTTKRAVSDWTMVIYYELEPYWRDMKTFNSGINEFKYICPELNNNHICPYVSISQHFRHLYDELQMTNSLMQHTR
KRRSPFDAVGNIANSLFGVLDSNYANEMTKVIEKVKTNEEFLLTLLKNQTSVLDSTINIVKKSRSASDKRLRLLEQQVAI
ISQTRGKYTGARLTETYLALTTQLTLLAASLQRMQSEIVDVLTGIRHRTISPTLISPDQLKEQLDQIRDHLPPDQMLPVT
SSDVIHLYRIMRAEGTVTDTHVIFRIRLPLVSTSILELFNIVPIPMWDSTSWRLFELKTPIIAVNSHRDQFMGLTTDDLQ
RCRTLPNEEYICFDHQAMFNVNNRCEFQLFNNKTPTMCQVTHRATKMVWSKTHHPNNWIFATHSVMELQAVCNGTPSTIQ
LMDTGLLSLSSGCTARNSEISISTFNIIISHVRKGYAHFGNIIEPNTTQINISENKVQEDKDLDDLQLTLNALNKQELPD
QISSVQHHHIAAYAVLVVSVLVLLAYTLRKQRFWTLQSTATRNEAAITPVPSASPRRFTLDLDDG
>BEL-2_NVi#LTR/Pao 689-6068 via tfasty with MAX, 4 frameshifts and 3 stopcodons. [Nasonia vitripennis]
MADPAGELAKQKRTSGFILNFKRNTAKLAATARTLPHMRTRLSLLDAYWSEYXQRDLXLQANXSAFKGEAYFEXDEYLEV
ETSYVETKADVLQTIEELEIAARPPVTAAGAQNSQVVHAPPVPGPSEFANMPKCHIPKFSGKAEEWETFKEQFSSMVKNK
ANLPDAIKMQYLVDSVEGPAALRVKGLPLTGASFELAWQKLMRRYDNPKRRMHTYMELLIDMKPVKRKSSGELIELLDKA
EAALKTFKDVGCPCEHWDSWLIHMVERKLDNETREGWRISQESVVGFSTFSALTNFLETRASSLDQDADGDAESPTGKQA
SQKGNGSNRSSRRESVSANATSTSFAKGNRNASVKCSLCRGPHQLQACPKFNGMSTSARFEHCKKKRLCLNCFEIGHFLA
DCPSQSRCANCNGKHHTKLHTDRRQGGDAAESTQSTGQKGSSSAPGKSSMLEVSASTTVVGNWVTSIRRWxFDIRxMLDx
SVCRGLFVTQRVVQIVRADTTRRFTRIDDKEERLRDSSNSTGQKGSSSAPGKSSMLEVSASTTVVGRTRLMATAKVLLQS
VDGNSMYARCLIDPCAEVSFVTQRVVQCLSAKIKPVSVSVVGVGAGPSAVSKGEVFLQLKSRLNSEFCLEFSALVLREVT
GFLPREEVVVSNWDHIRGLQLADPDFARSKRIDCVLSAEVYAAIIRPGLRVGATDTPVAQETVFGWILTGRASSAPESDR
AQSAQACHVEVEPSISTLLERFWEMEEISTSKVLSEEDQYCEDYFADTVYRDSKGRFVVRLPFSEKLSEVSFAHTRQIAV
ACLLRSEKRRAQDSRVDSAYRKFMEEYLTLGHMELVNSSHRKDNTFYFTHHPVYSAEVGPEGKFRVVFNGSFGKISLNDV
LLTGRKLQSDVTIIISMWRFSKIVFTADIVKEFRQILIHPDDVDWQRIVWRSDVSKPIEDYRLLTVTYGTRSAPYLSIRT
LLQLASEGSLEFPLAAQVLRHNMYVDDAFVGADNESEAIEIRNQLIKLLSSAGMELGKWASNCSAILEDIRAEKQKEFAV
EWDEAISALGLKWTPSGDSFRFEVKVPVAPKIVSKRSILSEISKLFDPLGWLSPVLVRAKLMLQDLWINGVDWDSPLTGE
LLEQWQMLRSDLPDLAQLRIPRWFGSSSQTSWELHGFSDASQRAFVAAAYMVIPGQKSALIMSKTKVAPIKTESLPRLEL
CGSVLLVRLLKHLLDGLLLKPVSVHCWTDSKVVLDWLKGHPSRWQTFVANRVSEVITTLPGVQWRHVKSEDNPADCATRG
FSSEQLQQSSLWWEGPEWIRNDWRKVIDRLPVDVSLDVVNAQVAVEEMEAARVGLIRYVQSQHYEEELRCLRSKQRLSSR
SHLLRLVPFICPQGLLRVGGRLQHSFLQYDEKHSIILPASSIIVKRLIEVVHRQTLHGGVQLMLSSLNRTYWISRGLRVV
QGVYRRCHRCIRYAAQSVQQQMAPLPSYRVTPQRVFAYTGLDYAGPFPILFSKGRGAKSTKGYIAIFVCMVVRAIHIEVV
SDLSTAAFLAAFRRFTARRGLCRMVFSDNGTNFKGAATEIDKLFQRASSVSQEVAAALAKDGIVWSFIPPRAPHFGGLWE
SAVRSFKHHFKRVIGDTPLTFEEMSTIAAQIEACLNSRPLCPLSSEPTDSVALTPGHFLVNAPLNVLPEPFDDVNLKSRT
CRWKLLSVMRNHFWERWRLEVLHHLQQRNKWLTPGRQLVVGDLVLLKDELCPPSKWPLGRITAVHPGKDGLVRVVTIRTA
NSEFQRPVVKVIFLPSDESAQRAVSSLQPESSQD
>BEL-2_DSe#LTR/Pao 45-5529 via tfasty with NINJA, 5 frameshifts and 6 stopcodons. [Drosophila sechellia]
MPALRRSPRLDQSKEPTTSVASDIQQPQSSKESGLLGQNSSGTPQPAIAGQTTNSTTVEVANLLERIATLERELYKAKAK
EGQAETARNPVGIGLSGNGNGNGAANTQLSMSETSSAMSEATTQMLSENLQREQFVTPSLNEPLLAQLSANLQPQLSGTS
GQQVTRNNNCTTVSLSPPCYVTATVQPELGYVDALREPQRNLVVTAPGSYGTSPASIPNVWTPRRLPDLPEFEGQPEEWP
IFQCAFTETTEAYQCTALENNQRLVKALKGEARAAVKALLIHPNNVQEVMEQLRFRYGRPEQLIRSQLESVRDVLPISEP
NIARIVPFATKVSNLAAFLKSTKNGIQHLGNPTLMEELIAKLPISKRLDWAKHAATIEPYPTVVHFSEWLHELARLICIV
TDAASKDPKRRLLHASTSRLDGKDTNSHKCCPICEEQHGIKDCEEFHHALPTARIELARKHRICFACLESGHMARFCKKG
TKCSVNGCQRRHNYLLHDRIGNSRLPQSNGGRLKEHTSTRDQELQRDTSHRRRNPFTSTTATLKAGQADDGQESPHRNLS
CVDPDGDHLLFRILPVTLYGRNKQVDTYALLDEGSSVTLIDDEIIQSLNLKGESRQLNVQWFGGKSAREHTTVVSLQISG
TGKSMRHDLRNVFAVSNLNLPMQSLRREDVKARKENAPYFDATPRILIGLDHAHLGIPLRTRSFGAGGPFAAATKLGWVV
YGPVKGSASPPVSRSCLLAVSHDNLLEKMVSDYFETENFGVKPAPPVAAGDDVRALSILEDTTKRVGRRYQTGLLWKVDE
VRLPDSYNMALKRLVSIERKMKRDEVFARAYKGIMDDYIKKGYARRLEPQGITHTNGKVWYLPHFAVENPNKPGKIRLVF
DAAAKGISLNSALMKGPQRYKSLPAVLFHFREGAVGVCADIKEMFHQVLIQPQDRCAQRFLWRNGEDRRNPDTYEMQVMT
FGAACSPCAADYVKLVNASQYSSTDPRAVLAIKEYHYVDDYVDSFVSKDDAVAVSSRVREIHANAGFDLCRFSSSSADVV
KALNPQGSNTNVKWSESEEKILGMYWQPATDNFKFSIKYHRVPSSVMDGKRVPTKREFLSLVMSTFDPIGFLSCYMITAK
LLMREIWRRRVKWDEPLPDELAAAFERWRQEMKYIEEFRCPRYYFGAGCVRTLQLHVFVDSSQSAFAAAAYWRATYANDD
VQAHFVCSKTKCAPMRTMSIPRLELQAAVLGIRLMDTVKQEHGVAISSCTLYTDSKTVLYWITSTHRRYKQFVGNRVAEI
LESTEVSQWRWLPSAENVADDATRSQRRVDFSQGSRWLSGPPFLTGPEESWPKFSVTDGRAPQAAEEEEMSGEFVLAMVN
APLLSWQRFSRFNRLVRTTAWILRLIRRCRGQRYEREEHGLTSVELADAEHALVRLAQREAFGxEAQTGTVSKSSQLSGL
SPYLDREGIMRANGRIDAAACVPYGARRPIILSHKSALAEMIVRHNHETKCHQNVEATIGEIRQKFWITNVRRLLRKVVA
ILxRMQVAEGTTDTTENGPIARGSAxGKWMAIxVHWPGLFRTIACVDWAPNREEVGGAIHLLNYESRPLGVAHDLSTDSC
IIAMRNFMCRRGPVFRIRSDNGKNFVGADKEARRFTDVFDPVKIQGELSSKGIEWIFNCPSNPAEGGVWERMVQCVKKVL
AHTMKELAPKEHVLENLLIEAENIVNSRPLTHLPITVEQEAPLTPNDLLEGMSDVPNLPGDDELASERCTKGSSGVSLGx
xEIGSGNDGCTSTCPHLFAERNGASVLSPCVEETWYTSAIRPYHAGSGKEASLKRYSPGKMECHGGLR
>BEL16_AG#LTR/Pao 231-5441 [Anopheles genus]
MSVSEDFAGFSDASGSNNTMQYTQAEDLDMIILKRERDRVVQSLTRIDTFLAQYKESDFPELTPRLDLLNERWREFQALA
RNIGAKDYSEDNDVLYGEIEDKVMLLKGKLLGKLRAGAEIPSVKQERVCDDYNSVRLPQLTLPQFSGKYDEWLPYHDMFV
VTVHENEKLSQVEKMLYLKGSLKGEALKVVDTLQACNSNYDVAWDALKKRYSNEYILKKRHVNAMLQWPRMKVMNTVGIH
GLIDCFERNLQILKQLGEVTEQWGCLIIQIIISKLDESTQQKWERHVEESEQKTVTDLLNFLRTQTRIMDAFAVDRPMAA
GKSTSERRVASNVAAEAKCAKCDGSHMVENCDSFRSLTLPRRREVVEAKKLCLNCLRQGHFQAKCWSRARCNICNRKHHS
LLHGENVSETIGPSVREELPSTSGTQNVVVNASSNRECTSVLLSTAIVSVRACGNKWLSARALIDSGSQVNLMTKGLAAR
LKLPQYESKTALSGVGHSKVDITTSVTTVIRSKSCNYQERMQFLVLPRISSYRPVTGNQISRQNLPMNFVLADPNFDSDA
EVDLLLGSEFYATFLKPDNRGKIRLELPALPTFISTVFGWVATGKVPLASEGSNYVTCGTCTRLDDLIERFWIIEEIREP
LQHSQEERDCEAHFVQTHQRDSEGRYIVKLPFKCDLQNQLGPSSAIARKRFLQLERRFNRDPWLKQKYTAVINDYIDKGI
LVKVAANPDSEEAHGHYFLPHHPVIKASSTSTKVRPVFDGSASTDGGKSLNDLLMTGPVIQENLLALLLKFRMRSVALVA
DIKQMYLQVKVHPDDTRFQRVLWRGSSVESIEVYELQRVTFGLAPSSFLAIRVLQQLAIDEGENFPLARQALLEDFYVDD
YIGGASSEEEAVRLQAELTLLLRKGGFHLTKWNSNKPDVLSSVSAEDRATSNVKMFEVPEEPIKTLGIAWLPESDQLYID
SNIQMNNESWSRRKVYSLVARIYDPLGLVAPVTSWAKINMQSLWLATDDWDEEIPAVMQERWYAFQSQLGLLKEVKFSRH
AVVHNPVAVQLHCFSDASEAAYGACVYVRTIGSSGEVVVELLAAKSRPAPLKRVSLARLELCGALLAARLQKVVRQALRI
PDVETFMWTDATIVLHWIRAPSHSWATYVANRVSEIQELTHGYKWMHVKGVDNPADIVSRGAMPNELLASKLWFHGPGWL
QLSEEEWKKNASGVLAIPEEELLERRKSSLVAAVSSESDDWCDRFSNYDKLLRITAYCMRFIRCCQRKLDPKHKGVLLVS
ELAEAKIRLVKREQRIYFAAEIKELSAGQTVRPKSSLKTLGAFLDGDGLLRVGGRLHRAKAMQVCSRFPLALPKKSRFTR
LMAEYYHRLALHGGPTATLSALRREFWPIQGRSLVNSVCRGCLVCFRMNPALVQQPPGQLPVSRAMPARPFSIVGVDFCG
PIYLKPVHRRAAAEKAYISIFVCFSVKAVHIELVESLSTHAFLAAFRRFVARRGLPSEVYSDNGLNFQGASKVIDDFYTL
MNSDSAVEDISRYAVGAGVKWHFIPPHAPNFGGLWEAAVKAAKRVLLKVVGDRQLAFGEMSTVLAQVEAQLNSRPLTPLS
EDPEELDVLTPGHFLIGAPMNALPEPDVGDVPINRLKRYEELRRVVQNHWARWRREYFSELHNEHQRGKAVVELKVGQMV
LLKEDGKTPHHWPMGRIAEVFPGPDGVVRVVSIRTRNGLYKRPANRISLLPFERVN
>BEL1_AG_p2#LTR/Pao 6452-7959 [Anopheles genus]
MARYLCIISLLAAWKLTDNLSVKPVEEAGIFFDHEGTLLLKRGVWETTFHTKIHPENDTETLLTMEKEVTTVFKALSDMD
TNLLNLKLTLQQNIRHALQLSQTAVKRRTKRSSGIFGFLKGILFGEDDIDEQLALFRASEDQKLKHISEDMTHKIKQGDR
LRNKLNMKIDHMNEGIKSLNKSFNENKKNVLIKHVTETIMLAEDIVQYITTRYLELEIQPLSIFDSTKISEKIQSRLPDG
YTILDHPRISSKELFRGEIIVHIENVIVSQERFEIFHITVIPNLKNFTTLDLDENVIAINDIHYIYPTDITRYNSTHHVS
SDVAVRRDLDCISSSFRHIKTECLCGIKPIKNSITKFVKLSQPNKILYYSSHPNEIYLKCNKTLTHPAYQAGVITLSQDC
KIQTKNIEIQPTMKIEAVETKMYFKPLAKILNLSAEQKEETNMDQLYLIIITSTIACVATLILGITIAFIIKQVRAKMYT
LRPPPFKPSPNSNPSTRNYGGQ
>BEL1-NVi#LTR/Pao 88-5975 via tfasty with BEL17_AG, 3 frameshifts and 4 stopcodons.  [Nasonia vitripennis]
MAASGRRHRPLDNVPENVAMGPGDPGVVPAAIENDAAQRDASPPHQDRCAATGARNRVPAAPQQHVAAVGDAAAPPPRRR
APAAARNRAPLAPLAAAAVGDAVAPPPRRRAPAGGRNRVPPAPLAAAAVNNADAAPLHRRTPVGARNRAPPAPPPVAVAE
GAAVPAAPPSHRRAPAGTRNHVLPAPQRADVLRNKQKNRPCLRSQLQRSAAAISERYRAKRRQRNKSVGDRLAKRPRFNC
DFSDESSSSLDVDNSLHRPFFNRNQFEPRVGNFNLLNNEINDNYFRVANGMNNRAHSTSYNNPLTNKNCNHSSEYVIERF
AKALENTCLQSNQSNLNSRLLHRMSTSKVLPTFSGDPLEWTRFKKAFEVSTSLGKYSDSENLMRLGEALKGNAREAARSL
FVAGNNTEDIMKTLEMRFGNSRLILNNIILEIKNLPSINSKKISIIEFATRLRNAVLAIKSFDNHSGYLSSPDLSNELIR
KLPDAMISNYVRFVKAQGYERSDLEKISDFIFEEAELNIAAGIFPTSSSETTNEASDSSTKKPRNPQKIVCALNVNEGSN
NALEQPSGNCEHCGRKNHKIYTCRDFMKAPVSQRWKVVKSNRLCFRCLEKGHSRDECVKESCKHCARKHHELLHFHGQKN
SNSRVENSQKNDLVPVSTATEPVLSTLNMSLxLEQRVLLKMIEITVIGTHSSKMIYALLDEGSTVTIINSIIINEIGGER
SRYVSLAGVGSEKSIAVINQKVNIKIQNDYDTYSLASVxxLTTLHFPCNMYLQRSRSYVVNAQRLPICDYNAVPVLLIGQ
DNCKLILTSEFREVIGKNQVVSRCELGWVVHGHYKTSEFSRRVNCVNKLNQCDEIISRDNTLDRLVKAYFDIDAVGLINN
SIQSTADEQALKILEETSRYIENAWEVGLLWKGESVNLPNSRVTVLRRLQLLERKLDRDKDYGEKYYREMDRLFENGFAK
KLTDEIDNRRIWYLPHFGVLNINKPGKVRLVFDTAATTANISLNGLLLAGPNFLNVLPGVLMRFRQFAVAIKGDLKDMFL
KIKINKIDQNAQRFLWRGRSRTEKPQEYVMTTVLFGAKSSPCTALHIKNKNAALYASKYPSTVRSLIENCYMDDYLDSCE
TVDEAESRVKKAIEINANAGxIMHSWSSNYKSVLHNNNINCDSDQLIKTGTEIQSGEKVLGLKWLDVSDELSFNINLSRI
PIDLHKGVRKPTKREFLSVIMSVFDSLGLITPFTIRSRILMQNVWSSGITWDAELHDTEFVQWKQWLCELKEVVECKVDR
CYQLKNNQANSAELHVFSDASSKACTAVAYWRFKLSEDRYHVSIIMAKSRVVPLKGETIPRLELQAAVIAVRLAKLIAEE
HRFVITKRVFWCDSKIVLYWIKRDLKDFKVFVANRLSEIREKSSASEWRWIHSAENPADDGTRLTGQTLKSTSRWFLRPN
FLREKETFWPADEFHSENLDQNVNLEHKKSVVEVYTVVNKTRIIDLSRFSLWTRLISTTTRIYEAVDIWKNQARTPLQRY
LLAEETCIKISQLNSFEKEINALKNKDKLPKDSRILTLNVYLDECGLLRSNSRIIKLKAVEINTKPLVLDASESGTQLLI
KYYHGKYYHASHKTAENELRQRYWVVGLRNKLRSLVAKCAICRMQRGRPSNPIMSALPECRLAYYERPFRYCGLDYFGPM
TVKIGRRREKRWGAIFSWMSTRAVHLELAHSLSAGSAIMALRRFTARRGTPSKMYCDNGTNFRGMSLEPAREIREINREK
LQEYANRNKIDWIFNPPTASHMGGAWERLIRSVKTALAVILKEQAPKEETLLTILAEVEHAINSRTLTQLSVDPRDQEAL
TPNHFLLGFSSEQIRINRSDVQSTCPRKQWQIAQKFADAFWKRWLKEYVPTLIPRSKWHENDESIKVNDIVLILDDNVER
NQWRKSVVTRVLPGSDGQIRIAEERTANNILLRPTRKLIKFAA
>BEL1_Dpse_frag2#LTR/Pao 28-1817 via tfasty with BEL14_AG, 1 frameshift. [Drosophila pseudoobscura]
SFQPEARWFSGPPFLFDEEEHWPTTQLNSSNLERIRRIHVHEWTDTPKPPSKLSSIIPNVCRFSKWEKFTGALRCVMRFL
DKIRKRDFASEEANLAARFRNMEDVNIVIYRMVQEEAYSEEMALLRQGRIVSKKSSIYKLSPYLDETGVLRIRGRIDKSI
GITRNLKQPVILPGGHNVTNLLIDYFHRKFQHQLTEIVVNEMRQLYHMPGLRARVRAVAKTCQRCRNKRALPEAPEMGSL
PPERLAINELPFTTTGIDYFGPLEVNVGRRREKRWGVLFTCLTVRAVHIELANSLSTDAFMLTLEMFVARRGVPKRIVSD
NGTNFRGASRLLREEIERILPNELETKYPQIEWSFIPPGAPHMGGAWERMIRSVKSILAEILEETHVQEPVLRTALAKIE
NMLNSRPLTYVPLECPEADVLTPNHFLRAETSSMAAKNDGSAIGAMLGKSFRIAGQIVDSFRKRWLKEYLPCLTTRTKWH
GTPTNPIQLGDVVVLADETSPKVQWRKGVIMDLRVAKDGIARSAVIRTASGLLTRPIVKLAKLDVRTTNPLMDQGVTRSL
ANITTSDEVCEGRNVTAETAAAALNITAPNSPEYHCA
>BEL15_DR#LTR/Pao  37-6070 via tfasty with CATCH1_DR, 1 frameshift. [Danio rerio]
MATSRDFNENQQSLRPSRIRRIPGHLDDFVLTSQPQHLVSPPLQEDLQHMHVSETITDPDVEYGTSTPYRPDTETTRLRK
VEESVWNVQEQLRELQSTLKMSIQQSKGSPCMHQDLSYVSATGTGHHRSVPHPSSQQQSIQQRSVSLPLLCSGHLSSGNI
EKPKYYSPVIPARLPTTNLPQPHSLPPVQMTQGLLPQTLQPLSRTASLPIEHHVQQRETRPGSAPAGVMHPPYVYQQPSD
FHQAYPPQVQSIVHHSITSMTPPTPTVYRAAPSYPSVHVPSMTTVPSHAVNTNYVEPQSLTLAPPVMPHFSEPPPLRSVH
YSDQYTGNYLPNRPLESISQQPSYATPFSSTVPPAVQAPSMMEMAIASSYGIPKPKLINFTTGKESDFALLKKGLNSVLG
PHLHLTEDYKFQVLLDHLKLPAAFQIAKRYMYDPMPYSRAMQALQQRYGQPRQLVEGEIGSILRTPSLRPGDAQGFEDFA
LSVSTLVGLLNTLEGSSRVELLCGSHVDRLLTKLPPSYRDSFVEYCMSRGILQNGSDRTYTLPQFAEWLENKSQALQISR
RTAELYSTDKPHIDVRELKPTKPPKVHSTIYYGINHATAGPSTTSSLQPNKEQTKVKKRESFKPYCPFCKCQEHYLNSCS
EFVKLNVAQRIAWIKDNDRCWKCGRGHEPAKCTLKKPCSSCGEQHLPILHDTASSINKSVLTVNTVPRTVYLDQITHSCR
VMLKVVQVRLHNKGRVLDTYAILDDGSERTIILPTAVHHLNLEETDESLALRTIRQEVVEIQGASVSFEVSTSAKPSIRY
KIHSAFTAQDLNIAKQSCPVDALKHKFAHLRDIPIIPFKEVQPMLLIGSDYPHLIAPIAPVLMGPLGGPIAVSTSLGWAI
QGPTTFLDQPLETTCLNISMFHPPPKDPSHYVERLWQVDILPFQPMKDMTRSKQDRDAITMLETKTKRVEIDGVSRYATP
LLRKGNAKVLQVGPESVMALLRATERHLKQNPELAEVYNKEIHKLEQAGYAVKLTPEEAKVTEESWYIPHHLVHHNSKAR
VVFNCSYQFHQDSLNDQLLPGPMLSPSLLGVLLRFRQYPVAISGEIRSMFHQVRLLPEDHQLLRFLWRNMEKERSPDIYE
WRVLPFGTTCSPCCAIYALQRHVTDHREGNEEVVESVLNSFYVDNCLQSFLSTNEAKQLIDKMRALLAAGGFEIRQWASN
YAEVISHLPTEARSSCDLWLTANKTDMQESTLGLSWHCISDKLSFRNRTICKEEPTMRNIYRVLASQYDPLGYILPYTTR
AKILVQALWINKCGWDECIGGDMQDKWEQWTNELQYLSRITIPRCYFPICPESNKPKLELHIFCDASERAYGSVAYLRLE
GEDGRIYTSFVMARSRVAPKKQISMPRLELCGALTGAQLAKLLITELTLPINNTNLWTDSTTVLSWIKSESCHYKVFVGT
RITEIQELTSPNNWRYVDSKLNPADDITRGKPLYELSQACQWNQGPNFLQQSPEHWPIQPTSQSVEENELRKSFFCAHVT
VPQSSLPNPEQHSTWAELVQATYQSVHGTEAPPMSAAQRIDTELILLRQAQQDSFPVEIHALQNGKVINTSSRLSTLAPE
YDQTLGMIRVGGRLRKAKELDGDTLHPIVLAPDHPITKLIIQDYDNRLLHPGPERVFAELRRSYWIIRGRQAIKKYQHQC
RECRTWRSKPVNPKMADLPAARLRLHQPPFWSTGVDCFGPFTIKIGRRHEKRWGIIFKCLTTRCIHLDLLHSMDSDSFLM
ALRRFIARRGKPFEIISDQGTNFRGGSRELQEAFSALEPDIKEKLSEQSISFQFNPPHAPHFGGAWEREIRSIKSCLRVV
LKDQIVTEEVLTTVLIEVEGILNSKPLGYVSSEISDPDPVTPNLLLMGRRDASLPQVVYGKEELLAKRKWRHSQIIADQF
WKQFIRNYLPNLQPRTKWHHSTPDPSVGQVVMIMDPQLPRAFWPIGRIKQAVPSSDGTVRVVDVTIDSRVYRRPVSKLIV
LPEMPTDTSDE
>BEL3_Dpse#LTR/Pao 708-5866 via tfasty with BEL4_AG, 1 frameshift and 3 stopcodons. [Drosophila pseudoobscura]
MAPRKGKDAEVLTSRTALMNSFVRNKVYIEKNSDSMMAAELEARLSLIETNFNQFCNIQAKIEHDSEDASEYESRYEAEE
VYCELKAKLLSCLGHRGRRQSNVGDLLNSTQVSRSSRLPKLKLPEFAGKFTEWPSWYNTFATLIESDSELDELSKFIHLR
SALGAGPLSAIEGLELTGPNYRKALRLLKDRYENKAIILQLHVQELFNLRRLKRPDSEGLRVLVDNVNAQLVALKSLSDD
KEILDAVIFHLIRTKLDEDTMDRWEVEWDCKKLPSWSLLSQFLINRGVNMANREVRRGNGARPSGKGEMKNATLAATIGS
NGCYVCPGTHGLKGCQRFNELSPVQRYHEAKKHSLGLICFSKRHTTRNCNGPRCRICSKPHHELLHREIPIVAKEPGLKG
QKLQEPKSLHSSLLSRSSTNFLATAVVQIKAIDGGYRNCRCVLDSGSQLNFLTARIVSALGLEMRDSVIQLSGIGNATSQ
VMGEVQATFKSRVTRYMATEDFCVLKEITQYNPTSSGICSEWVPPKGVTLADPTFQSGEDIDMLVGVTLFFKLIVAGQIK
LGAHLPRLQKSLLGWVVVGEFTKSSEVALLATDIARKGSKNDQLQELVQRFWKCEEVPETVDKFTEEEKQCEDCFVTHVK
QEASGHLVVALPFKNPKVELGETYQIALTRFLNLEKRLNRSQALKEQYVQFIEEYRQLGHLTAIEPAGQEKVEYFMPHHP
VIRPESLTTKLRVVFDASCRSSNGRPLNEANLVGPTLQPDLFETLTRFRFYRYALTADIKKMYRQILVAEPHRNYQCILW
RCNVSDPIQVLRLNTVTYGTNSAPFLAVRCLYYLVDRYAEKFPLAREAVKRSFYMDDMLCGAESKEELTKLKEQVTELLG
LGKFELHKWRSNYQGMDNNTSVEPLMLKTEDAAKTLGIYWSSLEDKFQFCFNIKVSAIATKRSVLSELAQVFDPLGFLSP
LLILGKIFVQELWLLKQDWDEELPASYATQWLRYREELKLIDKISIPxSSIPITADPCTLQLFGFSDASNRAYGGVIYAR
VRDEGGGISVRLVTAKSKVAPVRVTSLPRLQLQGALLVAKLMAKVxACLHIAVEKVNYFTDSTIVLNWLSSHASRWTTFV
ANRVAQIQELTHVQDWFKVDTKSNPADIVSRGLLVTELSKSTMWWNGPEFLMDAADDWTKFNWSEEIQTVPEERKCKFSL
TVGKVESNExLDVVGRCKFANDFLKLQRVFSYIFRWRRISLRSNSNETGNLTAAEMEGGLRYIVYNVQQLSLHEEFIKLK
EGKVIKSARIQSLSTFLQEEEGIAIIRVGGKLSNAELPFDTRHPILMPSNHKVVEALVELTHRKNLHAGAQSLCAFLRQR
YWVINCRKLARRVIRGCIPCFRRRPLAATQLMGALPANRVRGNIYPFERAGLDFAGPIWMHFHMRGKRPVKVYLCIFVCF
ATKACHIEIVSDLSSNAFIAALKRFFARRGLSSDLYCDNATNFVGARELNRAFDSPSQKLIDDECSQRGVRFHFIPPRSP
HFGGLWESAVKVAKQLLVKCTNSTALNYEDLVTAITQVEAVMNSRPLHPLSSDPNDFEALTPGHFLVGRPLNALVELVDD
ALLKLSMSNHWKRILMVHHMFWHRWSAEYLTLLQKRTKWSTVANNIQLGTLVLIAEDNAPPGQWPLGRVAELHPGADGAV
RVVTLRTKTGLFKRNVHKLCPLPTDADELNVGRSFQGGEN
>GB:AAC33319 envelope protein (gypsy_Ty3-element) [Drosophila virilis]
MNELDQEKQKGKKLDILIFNLQHFTEYIEDIEMGMQLTRLGIFNPKLLKHDYLLHVNSEKLLNTKTSTWFKSDTNEILII
SHIPREIIKSPVFEIIPYPDENNNILTEIAHEKYFTQDKKVYSRETKKLINNKCLTGILNQITSECSYTKILQNFQINYI
EPNIILTWNLPKTILNHNCINNEITIEGNNIIKIFNCSLQINEISISNNMLDYTSKHLRRQ
>GB:AAA98435 POL3 gene product (gypsy_Ty3-element) [Saccharomyces cerevisiae]
TNVEHVRRVLTDLELESKDQQTPFIKTLPIVHYIAIPEMDNTAEKTIKIQNTKVKTLFDSGSPTSFIRRDIVELLKYEIY
ETPPLRFRGFVATKSAVTSEAVTIDLKINDLHITLAAYILDNMDYQLLIGNPILRRYPKILHTVLNTRESPDSLKPKTYR
SETVNNVRTYSAGNRGNPRNIKLSFAPTILEATDPKSAGNRGDSRTKTLSLATTTPAAIDPLTTLDNPGSTQSTFAQFPI
PEEASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLP
RLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG
NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESP
EEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRF
IPNCSKIAQPIQLFICDKSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVG
YFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAG
PKNVVADAISRAVYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYS
LEDEMIYYQDRLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHG
LLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDR
DVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPF
EIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDAYFKK
GAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKKFVYRPDAYPKNKPISSTERIKRAHEVTALIGIDT
THKTYLCHMQDVDPTLSVEYSEAEFCQIPERTRRSILANFRQLYETQDNPEREEDVVSQNEICQYDNTSP
>GB:AAA92249 ORF B (Gypsy_Ty3-element) [Autographa californica nucleopolyhedrovirus]
MIPARSSKLVRIPINATDGEVLVEEQMFCNCIVHECVTMVKDGRGYVELENPTPNDVIFYLDQPASAELFNIKCTQVEQS
QRVDDVLSRLRTDHLNEEEKANLLRLCSRYSDVFYIDGEALTFTNKIKHRIRTTDEVPVYTKSYRYPFIHRQEVRDQITK
MLDQGIIRPSDSAWSSPIWVVPKKIDASGKQKWRLVVDFRKLNEKTIDDKYPIPNISDVLDKLGKCQYFTTLDLASGFYQ
VEMDPQDISKTAFNVEHGHFEFLRMPMGLKNSPSTFQRVMDNVLRGLQNNICLVYLDDIIVYSTSLQEHLENLERVFQRL
RESNFKIQMDKSEFLKLETAYLGHIISRDGIKPNPDKISAIQKYLIPKTPKEIKQFLGLLGYYRKFIPDFARLTKPLTQC
LKKGSKVTLSPEYVNAFEHCKTLLTNDPILQYPDFTREFNLTTDASNFAIGAVLSQGPIGSDKPVCYASRTLNESELNYS
TIEKELLAIVWATKYFRPYLFGRKFKILTDHKPLQWMMNLKDPNSRMTRWRLRLSEYDFSVVYKKGKSNTNADALSRVEI
HTTEIDEIDSVIENIKELSSMINNPSETSRPQRQTENTDEIRQNSTTDTVHTSDEHPILEVPITNEPLNRFHRQIHLTVV
GDIKRRPIVTKPFESHTRIAIQLSESNLEQDVISAIKEYVNPKVKTALIINPPLKMYSIIPIIQKTFRSSSLNLVLTKVE
LENVKEYLRQQDIIRHYHDGKTNHRGINECYLALSKRYYWPRMKDQITKFINECTICGQAKYDRNPIRPQFNIVPPATKP
LETVHMDLFTVQNEKYITFIDVFTKYGQAYHLRDGTAISILQALLRFCTHHGLPITIVTDNGTEFSNQLFSEFVRIHKII
HHKTLPHSPSDNGNIERFHSTILEHIRILKLQHKDEPIVNLMPYAIIGYNSSIHSFTKCRPFDLLNGHFDPRDPLDIDLT
EHILQQYAQNHRQQMKQVYEIINETSLANRTALIESRNKTRESEVEYIPQQQVFIKNPLASRQKVAPRYTQDTVLADLPI
HIYTSKKRGPVAKARLKRVPKGNTLLQDSAATDNTCDASSRDKT
>GB:CAA77892 env homologue (Gypsy_Ty3-element) [Cladosporium fulvum]
MAPLLKEGDKVYLLTKNLKTRRQTKKLDHVKVGPFFIDKVVGPVNYRLRLPPDAKIHPVFHISKLEPADAETPCQESFHF
EPEAENEFEVEKILDKKGQRYLVKWKGYDESENTWEPRINLANCYQLLRQFQKWRQDSRKQEAQERRASPDQTRSRPKYP
HARTK
>GB:CAA77891 Reverse Transcriptase (Gypsy_Ty3-element) [Cladosporium fulvum]
NDRYRIPHTVRNIRIKRIAQHGAARTRTLLRNAEDPGTSSSTDVDTERLAPGSSGGLETRSTTFHIRTGKRINSPGMSDR
RELCNTEKAQASPTTTVFRTKIIVNGHKTDAMIDSGASGNFASESFVTRNRIATCKKKEGYELIAVDGSSLPSVERETIP
LPLAIQRHHEEITLDVTDMASHDIVLGMPWLRKHNPVIDWRRGVLTFRECECVIDIQPAQWQRSLADEARKQLNRIQLAP
TRRTEEPPSTGTDTGVGPPGHEVTGSDGSNAPSKDTNISELSIPKEYRKWSRLFEEERGKDALPKHQPWDHKINIQPGKE
PPWGPLYQMSEKELQTLREWLKEKLAKGWIRRSTSSAGTPCMFVPKANGKLRLVQDYRKLNEITIKNRYPLPNIEEAQDR
LTGSDWYTKIDLRDAFYAIRMAEGEEWKTAFRTRYGLYEFLVMPMGLTNAPASCQDLVNETLRDLLDVCVVAYMDDILVY
TKGSLQEHTKQVQDVFERLTKSGFKTAPEKCEFHKKEVKFLGFIISTTGITIDPAKTQSIREWPEPKTVKDVQSFLGLAN
YNRKFIKDYSKTAAPMTMLTRKDVNWKWGKEQTEAFKRLKEQCASAPTLRLFDGSKEVHIETDASDMAIGACLTQTHDGK
RHPVAYYSRKMTTAEQNYDIHDKELLAIVAAMQHWRVYVEGPPKLTILSDHKNLTYFTTTKELTRRQARWSELLGQYKFE
IKYTPGTENGPADALSRRSDYMEGKEPVQHKILKTNPDGSLSANTREFNNIVRILSDKEEQFPISQGKYQVPKDREEECI
RQHHDEPTYGHPGTSKTVDLIQRSFSFPQMRLKVLRYIKKCVHCQQNKAARHAKYGHLQFRTPPTKPWDEVTMDFITKLP
RSKDRVTGQAYDMILVMVDRLTKYAHFIPASEIYTAEQLGYLVLDRLIRYHGFPEVFITDRDKLFTSNYWKTLMGTIGIK
HKLSTAYHPETDGQTERTNQTLEQYLRHYINYAQDNWVSLLPMAQIALNNHKSETTSTTPFMRTLARTLTYPEHLDPTHR
PREQS
>Academ-2_CGi_p1#DNA/Academ 4103-5110 [Crassostrea gigas]
MCCVLFFQKFSKTSDEEIPLPHNFQNLSSEEKIAWFNGICCEILQEYFFESQTDIMKDLREILTDMGHPENYYLSNLENG
RVQCHFCPKSYTYVGSLKVHEEKVHGAKTPETKRSTEKVKDEVGNYCQLFFKLALLHRNLDTAVDMADGHRSVRSAKYEL
PIYVKTNKTKYAIGSIHLISLTEGILDEEEKERLIANRCVNLQGGKNNNMALDEYVELLNRDSKIVCSGYQTKDSILRHS
KEFPHIVNFVKHYDTFCGVTTKKGIHNLPSYEQDVKKIVKELEDLNAFLHVEGRKLKCKTLCTNKNIFNDCFKGFATLVH
RHTPLVAFHRLRNKTI
>Helitron-1_Gav_2p#RC/Helitron 3349..4395[Crocodylidae]
MDGPGGSGKTYLYNTLTCYIRGIGQIVLPFATTGIAALLLKGGRTIHTGFKLPIPILETSTSRMSLRSPEAATMKKATLI
IIDEATMMHTHALRCIDLLLKEIMQNETPFGGKXLLLGGDFRQTLPVVVRSTRTETIEACIKSNHLWSNFTKIKLSQNTR
TEGQHRFNERTLKVGEGTMSNDYRLPPDLIEIPETFIEMESIVTAVYGNHIEVEDLESLAKKIIVTPKNKHAMELNTKII
TLLPGEMKKYCSADSMITDDSENQTTYPIEFLNAQTPSGLPPHELQLKIGAIVMLLRNMNPKMGLRNGTRLIIRGLHXNF
IDAEIITGTNIGERVIVPRLHRTHNYLSF
>Helitron-1_AP_hel#RC/Helitron 1-2895 (fragment) via tfasty with Helitron-1_AC_hel, 1 stopcodon. [Acyrthosiphon pisum]
SYDRHDIIARIFHLKVKTLMKLLTKGNLFGEVQCFMYSVExQKRGLPHIHILLWLKQRISPDKLDFIISAEIPDPEKDPL
LYGIIKANMIHGPCGNSNNRSPCMESGSCSKKYPRPFIQETQTGDDGYPKYRRRAPENGGFTVEINGKTLDNRWVVPYNP
VLLRTFGAHINVEYCNSVKSIKYICKYITKGSDQAAFGFENDNDEVKLYESDRYISSSEAVWRILAFPIHERFPTVFHLS
VHLENSQRVYFNPNDSSRLTDMINNPPKTTLLAFFDLCKTDDFAKTLLYVDVPSYYVWKNNRFERRKRGINVIGWPGIKR
DQALGRVYTIHPNNTDCYYLRLLLHEIRGPTSFLKLKTVNGTIQPTYQTACKALGLLEYERHWDTTMEEAVLCGSPFKLR
ELFAIMLIFCQLSDAISLWEKYKDSLSEDIRHRVELDIQPENVNSIINEVYNKCLVTIEDTVLSLGGTFLQHYGLPQPSR
CEAVLQNKDYLREINYDSNILAQYINFNENLLNNEQSYVYNKILEGIEKNTGKTFFLDAPGGTGKTFVINILLARVRKDH
GIALAVASSGIAATLLEGGKTAHSVFKLPLNLTRVETPMCNISKQSNIAQVLKDCKLIVWDECTMAHKGGFEALNRTLKD
IRGYNSLMGGVTVLLAGDFRQTLPVIPRGTRADEVKSCLKASYLWPHIQKVALNKNMRVHVKGDTSAGIFAEMLLKIGDG
NFPSLEGEITIPSNLCTVVSSLSELTSRIYPDIINIKMKPIEWLCERAILTPKNDKAAEINEILLKAFNEKAVEYKSFDS
VIQSDDAVHYPLEFLNTLNPSGLPSHKLILKIGAPIMLLRNLNPPKLCNGTRLQVKALHKNVIEAIVITGCARGDIVLIP
RITLIPTDYPFEFKRIQFPIKVCFAMTINKSQGQSLSMAGIDLREECFSHGQFYVACSRVSSASSLVILALKGSTKNTVY
KEVLR
>Helitron-1_NVi_hel#RC/Helitron 158-5701 via tfasty with Helitron-1_DR_hel, 3 frameshifts. [Nasonia vitripennis]
MSLKRSVVKXKXXLAKKIXKKYKSIXIKQSBKKXIQTKEKYIQNVMQKLDCPSVLDRRIEADKLVTSAFYVRDNHISKVK
RELXNXKEKIEVSLTRLGGEPIDDDNCSYALTALCGLPKHTSSSEGYFGESTYDFTNGQINDKLETHIILNEQGQTMNIL
PTIESNTKSKIWQCNDYCKKVDPDVLNELNNLFQDLIDVTYINAYNFLKKIDNCSAQSHNSEKQGHPIICYSKPLLCTSK
FLKLNILSVHYPKLRTIKRFLYKIIDIYKQIEKIESALNNIDIEVLKNIALNAEQAAIFINSTNDEICLNETQIKNKYSQ
GIKEYTKIDMDPPKIPCVSCERLCCERSMESVDKYLDKTNLVEELLDIHIPEKQNYWKRLKELYDSPNFNNGFICKCCSG
KLKKYILPSTCVLNELYVKEVPDEIKTLNTYERMLIQRAKAFQTIVKMGTVMKKNLPNYCKIDKVTGRTFHLPLPLEETL
KKICPDTDPLNINHEMFILIRGNPTKGKIIWEDYVDVKKIWHALHWLKRWNPLYFNIQIPSCPEQIKDILGNLNLQYEDL
AKDNKMIIHKHNEYEHHSENNISNQNVDKIDTETNIHEKPQIAALLTQKSQSDPYYEQYSIYPLHTKKINETDSKLYQML
QIYATALDVRAEDLDLKCFPDLYPYGMYGQHEKRSVSLRDYDYIRSRLTSKHPQFRLNIQYLFYLLFNNNIRQISAGIFH
KLNVVNPRYKYTVKELTEKLEQDQLDSNLESIFSRLRGTEAYWKQVRNDLECMMNEYGPATFFITLSPGEWMWSALAEYI
REANGWENDKRSISELIAADPVSASRYIRNRFQAMLAYILSSAHPIGKVAHYYYACEYQGRGLPHYHCLFWIHDAPVYGK
APNKEIQKFILQNITCRIPNKHVSPELHRRVMAYQRHTHNNYCMRKKKTKTGFKSACRFGFPRPITPKLVLREVSVAIAN
KRKLRNKSRFYDLPRGPDEQCINDYMPALLVLWEGNNDAQFICESSYLLTKYVSSYGTKGEKSTVDFSDIQSNKSLCSRL
WSFSMRALNHRECGAIEAADTLLGHPLHATDTDTVIRWLDVRMIRNRKLKPFKEIKKLPPDSTDIFYDSLIDSHYPNRPQ
ELNSLCLYDFAKWFDIIKKKPVYKAEYYEMPGGLFCKKRKKPYLINHWKYNPTNQPENYYHSLLLLFQPWRDTDELKNGE
DSFTMAFQKRQCELMDAMKYHDKCGTIREAMEKMNEIIQNQLLETQENKSNPDNLPEGCVPIEIENAIKDFKDMAEKVVM
NEADIENSISRFNVDQSNIFKKITSVLQSNDKILRIFISGPGGTGKSFLIETIVAWNKTIRKKETAVTAPTGIAAYNVSG
LTIHRLLHLPVEHGCTAKYKELSSAALKQIRQSLENVDLIIIDEISMVSNITLMYIHLRLTEIFNTSECDDGWFGKIHII
VFGDLLQLPPVREKFAFVEVTKKEIEKYIGAINSFNLWTLFEYDELTINMRQKNDNQYNEILSRLRLGFITDTDINVLQQ
RKLKFSSTNSLEIMQELCAVYEKLPTDTVCLLPTRNMCDILNDAMLSRIDSEDINLIANDSFKCPKNLQKKVLKMLDEDK
DNACGIERVIKIKINSKVMIRRNIDVSSGLVNGTIGSVISVAKDKGDEIISVRIKLKDGTEHSIPKLEYKFVIMDKVYII
RQQFPICNSYGITIHKSQGLSLENAIVEAGNSIFCSGQTYVALSRVTKLQGLHLINFDPTNVKADSSAILQYNRLRQKYR
PDLQALVIQNDCMFSRPXAVQDRRWTVSKHILDIQANNSKLNIYLTVIGLFMVSQMRIMYLVMLTLVYRXCFIVHLLEGF
YWRPKVLTF
>Helmet2_hel#RC/Helitron 2533-6792 (partial protein; 3 introns via genscan with some editing necessary; poor quality consensus) [Medicago truncatula]
MDMGETDASNVGQKIVLQPSFAGGRHYMFNNCQDAMSICKKYGYPDLFVTIACNTNWREIQDFLKERNLKASDRPDIVCR
VFKMKLDKLMDDFEKEECLAKLMQRHVPCGGARPFSPCMDRGRCTKYYRKNYKGTTTIDEGYPRYKRRDFGIHVDKQRVL
LDNRYVVPYNPHLLIRYGGHVNVECCNKSNSIKYLFKYVNKVPDKALMQLSVDGDNRDKSKPVDEIKQYYDCRYVSPCEA
VWRIFAFDIHHKQPHVLKLLFHLHNEQGNIQTMFLAWFEANRQYVGGCDLTYAEFPTRFTYEKKDKQWQPRKLGYQIGML
HYTPPGIWELYYMRILLTVKKGCMRYRCIKTINGHTYDTFQEARSALGLLDDDREFIDGITENGKPTSLTDFKSMPRPNA
ADMPTFTNKLIIDELNYNKVELEKTHADMLLMLTDEQRCVHDKIMESVGSDDSGFFFLYGYGGTGKTFIWKRLSATVRSN
GLIVLNVASNRIAALLLPGGRTAHSTPTVPIEINEASSLTMEKDSPRADLLIIWDEAPMMHRWCFEAVDRSLRDIMSKND
PLNALKPFGGMTIVLGGDFRQILHVVRGGTTPDIVDASVNSSKIWAYCNVLRLTVNMRLGASSVPAEQEEIANFCKWILS
IRDGNNASGDNGEMKVEIPEDLLISNTTNPLMSLMDFVYPDLNDNLGDQLFFQERGILAPTLDSVEHVNEFMMSLIPSEE
KEYLTSDSIFRSGENSDVQSEWFTPQFLNGIKSSGNPNHRLKLKVRCPVNGTRLTVTHLGKSTIAAIVITGKRAGTRVFI
PRMNLIPSDPGLPFKFRRGQFPLTLCFAMTINKSQGQSLSRVGVYLPKPVFTHGQLYVAVSRVTSRKGLKLLILDEDNNV
CKETTNVVYREVFQKV
>Helitron-2_EPa#RC/Helitron 4453-8727 via genewise with Helitron-3_Mad_hel, 1 intron (5774:5851), 11 frameshifts  [Eutrema parvulum]
ECPYCKALVWYSERSGDDMKTGEPTYTICCQQGRVKLPPVKEPPPYLKDXANSIPFRDNIRVYNSLLAFTSVGANIDQSV
TXGNGPPAFRIHGQLYHRIGSLIPMPGKTPKFLQMWIVDTVNEVSNRMNTMSRRKASGELDESIMIGLINMLDQTNCLAK
FFRKARDRFEANQYQDLSIRLVGQKGKGRQYDLPEMNEVAGLILGDFTATVGYRDIIXELQSNHLQEIRDDHPLFMSLQY
PLLFPYGEYGYHTEIPKSATQNxSSSRSxISIRDYYSYQIHTRLSEGMTIIKGGRLLHQYVVDAYTAIEQERLVWARNNQ
DQLRADLYNNVFDAVGRGMTEANKLGKRIILPSSFTGGPRYMIEKYHDAMAICRTYGNPNLFITMTANPNWPEIKEHLQT
YGGLTGNERPDIECRVFKMKLDELLKDLESGTFFSPYMPVILYTIEFQKRGLPHAHMLLWLEDAPKIPSAYEINAIISAE
LPNKTSDXHRFELVGRHMMHGPCGRDRPTSPCMDKQVCTKKYPRPYTESTTINQSGYIIYRRRxAEDNFVLKGRAKLDNR
FVIPHNIDILKKYEAHINVEWCNTTNAVKYLFKYITKGVDKATMLIEKGTTNIREGQHSENVVQERNEIQEYLDCRYLSA
CEAMWRTFAFHIHKRKPAVQKLIIHLKDQQSITYRATDDLERVISRFGVDRTMLTGWMFLNTYDEWARTLLYVEIPKYYV
WDSNSKVWTRRKRGHTIGRIVNIHPAAGDLYYLRILVNVVRGATSFEYLRSVNGEVQDSYKAACYARGLLENDQEWHRAM
DEANYWATPHQLxHLFVTLLIYCEISNPLRLWEHCWKSLSEDILNKQRKQFGFEAMRLEDEELQQYTLIELEKLLHQHER
SLTEFKPLPTPDLNIIKELGNSLLTQEYQYNLKQESDLHELYHKSLNSEQKEIYDAXDDVSYLQLGQLFFLNGAGGTGKT
FVYKTIISKLRSXKRIVLPVASSGIAALLXPGGRTAHSRFKIPLHVNEDSMCDIKPGTMLAELILKTDLIIWDEAPMAHR
HTFEALDRTLRDLLSTENASASEKAFGGITVLLGGDFRQIXPVITEGTRADTVSASISRSYLWNECNIFVLHRNMXLKPS
EARFAEWLISVGDGTAPVLTSTPAKQGDDGEIIAVDKEFLITPAGNPLQQITDAIYAVDSVSASFIDRLTERAILTPRNE
TXDEINQYMLSQAPGESKEYLSYDSIERADSTGLDYDTLYPSEYLNSLEFPGLPKHKLLLKKGAPIMLLRNINQKEGLCN
GTRLIVTQMADRVIEGEIITGTHVGKKVLLPRIILSPPLSDHPFILKRRQFPVRVCYAMTINKSQGQSLESVLLYLPKPV
FSHGQLYVALSRVTSPEGLTIFQHEDITYNGVNNIVYKEIFN
>GB:S08404 ORF1 (Gypsy_Ty3-element) silkworm transposon mag [Bombyx mori]
FPLWVRKAYDLLSTLASPSKPSQLTYANAVAMLAAHLQPKPSILAERYKFRQRRQLNESIADYLTELKKLSKNCEFGSSL
DENLRDQMVCGLKSEIIRQRLFAEEKLEYKRAVTLALSLEAAERDAIAVERTPIEEVNKINFNECSRCGDRRHQAKDCIY
KDYVCSSCHETGHLRRMCPKNGLKNQAEAAGGSARTGRRGNRGAGGNRRSWRGQRVRDEEAESGLLCTYYTIKTTMTHTT
TSIMNRTGVEKKMSLCTK
>GB:CAA30502 gag polypeptide (Ty1_Copia-element) [Drosophila melanogaster]
MSNLYQIDKLEDGSYETWSIQMRSVLVHACLWKVVSGESVKPEVDTGGAWQSQDEKALATIILSVKSSQLGYVKGCLTAA
EAWKVLQDVHQPKGPLRTVMLYKKLLSKRLLEGQSISSHIKEFKEIFDALDAVEIGITEKLRSVVLLSSLPESFENFVVA
IETRDDVPLFDALCIKLIEEDTRRGGAEQQREKQTESAKAFTAVHKPQAPAREARPSAKKRKDVVCYNCGERRHFKANCR
REKVNKESATQEQCSLLNALDSGGFWQNTVVSR
>GB:AAC49501 ORF1 (Ty1_Copia-element) [Zea mays]
MDPKGKGIVINDKEKESFVNEPRDDKSNNSGSGHKRKDGKKKKTRRIKEIVYYDSDESSSSQKDDDNDYRKTVNSNFSFD
YSRIPHSSNSHLLSIPLGKPPHFDGEDYGFWSHKMRSHLFSLHPSIWEIVENGMKFDSSDSPMLINEQIHRNAQATTVLL
ASLCREEYNKVSGLDNAKQIWDTLRISHEGNDITMLTKMELVEGELGRFAMIRGEEPTQTYNRLKTLINKIRSYGSTRWT
DHDVVRLMLRSFTVLDPHLVNNIRENPRYTMMTPEEVLGKFVSGRMMIKEARYVDDALNGPLHEPQPIALKATRNKESLP
SKVAQVEAAGLNDEEMALIIKRFKTVLKGHKGQPSKNKTKGKRSCFKCGKIGHFIANCPDNDSDQEQGNKREKKKNYKKA
KARRILGKEWDSDCSSSDSDNEGLAATAFNKSALFPNEHHTCLMAREKKVVITRNTNTYDSSSDDESSEDEIDYSSLFKG
LDRTKIAKINELIDALNEKDRILEKQEDLLYEEHDKFVSTQNSLALEVKEWILSCELSTCNETISYLKGEINVLTAKLEV
ASNSCVENITICTRCKDFDVNACSEHLVSISKLNDEVASLNA
>GB:CAA30503 pol polypeptide (Ty1_Copia-element) [Drosophila melanogaster]
MRWIVVVFGKTQWCLDSGATSHMCCDRSVFTEFEEHTEKISLAGNGFLLAKGIGTVKLKTDLCTLVLNNVLFVPDLNGNF
MSVSRAAQYKCFVNFGPHYADVIQEGERILRVMRAGNLYMFQGKHNSCFAAVDADGSLWHKRNGHLNTSSLQEMVRKKMV
YGVEKVVFKPDAVCKTCMLAKIHVQPFPKTTRSRAEELLDMIHSDLCGPFSTPSLAGSKYFLTFIDDKSRRIFVYFLRKK
DEVFTKFVEFKKLVERQTGRKIKCIRSDNGGEFVNNVFDDYLKAHGIARQLTIPHTPQQNGVAERANRTLVEMARCMLLQ
SELGEALWAEAINTAVYLRNRSTSRALQSKTPMEEWTGKIPAVSHLRVFGAIAVALDKGVHKGKFESKGKEYRMIGYSIA
AKGYRLFDKEKRCVIEKQDVLFDESGSLVNHGNTIEFQFPATDDPEPQSDSNAREGDDTEPVGSSDDYESAAEAEEAEVH
VGPGRPKIVRTGRPGRPKKQYNVLGVLMASDVEIPKSYEEAINSQYSAKWEEAMGLEYKALLANETWKLADLPRNRRCVA
CKWVYSLKRDVSGRIERFKARLVAKGCSQKFGVDYFETFSPVCRLESVRLILALAAEMQLYLHHMDVCTAYLNSELKDTV
YMKQPQGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACNHEPCLYQQSGQGNLMLILVYVDDLILACQ
SREDMEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGHSQYIKELLRDYGSENCRPATTPLDAGHQVLCAGEQ
CQKVDAGQYQSTIGELMWLGLTTRPDMLHSVAKLAQRNQDPHSEHMVAVKHILRYLASTVDVKLHYQKCGQAFTGFVDAD
WGGDRLDRKSYTGYVFFLSGGPVSWRSEKQQSVALSSTEAEYMALTTACKEAIALRRLIVEIVCGDLKTPTVMHGDNLKC
AAQLAKNPVHHSRTKHIDIRYH
>GB:AAA21781 ORF2 (LINE-element) [Neurospora crassa]
MVQLKILYWNVGKSYERGKLLLEQEETYDIVAIQEPGRNLNGDIYRPRGGRYFGVDCSEKGRAVIYVNKKWNLKDLDFQA
GKDWTAVTFKNLRDPTTVYSIYSPILTQGTPEHQWGSPLLEFIEAGPPAGNLVAVGDLNLHHPDWDLENRTSPGAARLLT
WARRWRLSLLTPRGEPTRLGNATRGERDGTIDHAWLSPGVEAEYWGAQRCEQTGSDHCPQEIWVQVGRKNKKAEEEGGYS
WSLMDTEKVKEASEKRISVPERIDTVEDLELAFRRLDGELTSIAEEFVPHRKKGRGRRANWWTLECKTATKEARRTYWEW
FGCRTASNWREFVEATMKKKRIIAKAQQATWRDGVAEASKNPSRLWPLERWARTRSHRPADPPKLPALQTQEGAAEIGDH
SGKAEILADRFFPKVEVPTDHLPDWTEPPEGVDPIVISELVDEEDVQDVLSRMAPNKAPGIDWYSNRFLKLCGQPFRQAM
ACLASASLRLGHFPQRFKDAKVVVLKKPGKSAAQQKLAGAWRPISLLSNVGKILEALVAKRLTQAAEEFNLLPEGQMGNR
AGRSTEFAVRVVTDAVHTAWKLGAVTSLMLLDLKGAFDRVNHRWLLHTLWEMQLPTWIIRWVASFVAGRRGSLFFDDETS
RPYAITAGVPQGSPLSPILFILFITPLYRKLATIPNTITVGFADDTNVVAVARTTEENCRTLQAAWEVCSGWAGARGMEF
EATKTELMHFTRTRAPRTETLQLGDTVLQPTESTRFLGVWLDRKLNYRAHAEAVKQKMTTQTNALTRLAAKTWGCSFARA
REIYTKCIRSAIAYGASAFHQPTEVYGKPRGIVIGLAKYQTKCLRVVAGAYKATPVRNLETETFCPPLDLYLNKRVRAFE
ERLARTDQARFVRGTAAWVASCVQARRARGRPPADKPESGAAKARWAEAWAPTEKLLAMAAGPPPESGTPPPASQIPEPT
AADREEWLEDATNREWVSRYNHHLAAAVAKSGQRYEFTIADLNPKFSGEAIQRHMVGTKKKKGRRRKPEEEEDEPYPLTK
AKSSLLVQARTEVIGLRAFLHRRKVPDVLTPICACGLEKETFAHIVLNCLDAETLFWSDPDSWPLSKEELQEYLDDGVKA
ERILSWALRLGRLKEYRLAVELEEDQREELARHS
>GB:AAA74495 unknown protein (LINE-element) [Drosophila teissieri]
MSLTVIQWNLKGYVNNYSQLLILIKKYSPHIISLQETHIQHTNTIPTPINYKLLTNIATNRFGGVRILVHKSIQYTTLNI
TSDPEAIAINIQSKIKLNIFSTYISPTKNISDQTLQNTFNIQQTPSLITGDFNGWHPSWGSPTTNTRGKITQRFIDNTHL
ILLNDKSPTHFSTHNTYSHIDLTLCSPILAPHANWKILNDLHGSDHFPIITTLFPTTNTQKFNRPFFKLKEANWDQYSAH
TQQINEKYPTSQNVNKEAAQINRIILYSANLSIPQTSPNAHPTGFHGGTSTSTNCESKNNLRWKKLNRTITLENIIDYRR
KNAKFRYELKKRKKEASSSFTSTIHPTTPSSKIWTNIRRFCGLNPIKQIHAISSPENNETTLASNEIANIFAQHLSELSG
DWNFSEEFRNNKYRNNLHNYTPSPIAQTIEKNITYLELISALQTLKGSAPGLNRISYQMIKNSSPTTKHRITKLFNEIFN
SHIPQAYKTSLIIPILKPNTDKTKTTSYRPISLNCCIAKKLDKIIAKRLWWLVTHSNLLSENQFGFKKGKSTSDCLLYVD
YLITKSKMHTSLVTLDFSRAFDRVGVHSIIHQLQEWKTGPKIINYIQNFMINRKIIVRVGPHTSSPLPLSNGIPLGSPIS
VILFLIAFNKLSNIISLYKEIKFNAYADDFFLIINFKKNTNISLDNLLNDIGNWGSYSGASLSLSKCQHLHICKKHHCTS
KISCNNIQIPTVTSLKILGITINNKYKWNTHIYSLLPKLYNKLNIIKCLSSPKFNCNTLSLLNVAKATVIAKLEYGLFLY
GHAPKSILNKLKTPFNSAIRLALGAYRSTPINNLLYESNIPSLEMKRDLQIAKLSQNLSFCKNRPIHKFVRHKKYKKKTL
SIIDQTIKLSLELNLPYKPIKLHKYKPSWDLPNLIDTSLRGHKKQETSPESYRKLFEHTKNKLKPHSFIFTDGSKINCII
TFAITTDTNILKQGILPPYSSVLTSETIAILEAIELIKTRRGKFGIWFDSLSAIDSIKNPNNNSFYPNRIRSLITQLAPK
IKIMWIPGHSGIIGNELADQAAKLASNMPLIVTPNINNTDIKRHLKAELATKQKENIINCNQWYQSLNTNNTHTCDYLKQ
THQNWTRLDQIKIIRLRLGHTNITHQHYLNPNPITVCPFCQGDLSISHILNSCPSLIQTKQAIFRTLPLDLLSKPNPENI
QKILVFLKKTRIIPPNFKKKKQMYNNKHSNHLTN
>GB:BAA78424 polyprotein (Ty1_Copia-element) [Arabidopsis thaliana]gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) [Arabidopsis thaliana] (Ty1_Copia-element)
MQGFITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLALNSAEVVPITANV
VTHRNTNTNRNQNNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQS
TSPFTPWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDL
NKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSW
HSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVI
FVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSER
KHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKL
EDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPA
PPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPS
PNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQK
YSYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVA
KGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAI
YGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL
HYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLS
YAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSS
KKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQ
SGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVPPSCGGVLRI
>GB:AAC24836 pol polyprotein (Ty1_Copia-element) [Candida albicans]
MSTMPPTSKRTRKRTRTDDNAEPTIQDPSPPLANVEPTIQETPPSVEVSDETNSTEINETNSNTHEETNVLTNVHSSPIE
TVTERNFNFQQVIASISTVDNQSLLKDKISYDHWFSTLKENAIMISPDFLDFINKDTMDLQQYPTVYQTFLDRLICATID
PHIKQSLKYRKLSGKKMLSEIISQFGSMTIKDKVNYSIIMATKIHSDVTTHLDKMNLSAQFYAFLMRQPQDLKPALLLIA
GINDSRFNETYFHDNKELTISKLERYIINQNSKITPSVPTPSPRDAVTGLSVTQPTSASGQSEMFNTQCFNCFGLGHTAH
RCASPKRLGQINNLRSKLLAFETRSKSRKRFPPQPPPTNRSANSTIITNPSPTDDTISSTTEDSFPRDVFGWAASSDQIK
SNENLSLFFDTGASAHLINNLNLLHDYKPSKENKHVITANGDKIPILGTGTVKLQHGQHKISLRNCQYSPHLHINLISPR
LLLDDSTSMTITQSGIYHSKIGQIGYYSTEDGNLIKCMFRPITIPHLSLYSQYVEMGLQSNNVLRNIPAFTVHIPQLHDS
LGHTSTQQVSNVMKRFNVTTDNIGTDCETCRLGKAITQIPKISTHTISSHCLELLHVDVHGPISVPSIFQERYFLVILDD
YSKYLTVQPLCNKSDATAEIIEFINHWEKFFSGNGNYHTKILRSDNGGEFLNKTLTTYLDSKYITHQTSNAYEHHENGAA
ERAIRSVKDMARVILLQSKLPVPFWSLATRCAAFVMNRLPHKTINGKIPYEVWTKQLVNLKMMKPFGSQVYVKIPIGVKS
FSAQALSGIMVGYATNKKGYLVYDPTQNRIFTSSQIICHPSIYPAANLTFNEPLIISSKVTAAHLHPLTISNLVIPPTNA
VSETPLANCVLSSNSSVCPKVCQLQTVLEHGEDKIYASIIPISIGNMKRTRTNENKICQLDESNNTTIPDSVILSANNVL
LNLESRSSIPKSYKEAITSNEKSKWADAMDSEFNSLQSNNTWSLEPLPEGRKAIGIKWVYTIKDTGRYKARLVALGYRQQ
AGVDFVRNYAPVIRGESIKLIFALASKSKLKIHSIDVTTAFLDGEISELIFVTQPPGYEDKKRPNHVCKLNRSLYGLKQS
PLMWNIKLNDVLIKEGFRRLGGDLGIYISKDKRTIMGVYVDDILICAPSDSEIDQVKNNVRKYFSITDNALCRTFLAINV
YHQANDIRLSLNDYIRRMIQELKLSVSETNPVSIPSDVNYEIFRVNENDDEKPCDQTKYRSLIGKLLFASNTIRFDIAYS
VNSLSRFINDPKEKHWIAAVKVVKYLSGTQRYGICSYGNGDFNIYADSDWASTPSDRQSITGYIVTYAGAPISWRSKKQN
VIALSTTEAEFMALTESIKEALWLIYIFRDINVILKLPIVIYEDNLSCQKLLENPRFHNRTKHIDLKYKFTKDHIEAGTI
KVESTNSADNLADMLTKPLPKIKFKHLRWLAGLRPLD
>GB:AAC47270 ORF 1 (Gypsy_Ty3-element) [Tribolium castaneum]
MENNRNTGNAGAPPQEMPTWFVRWLNSQQPRNVPNFAAPSTSTAVQRPQAILQVRPSTSAAADVDGWQVTPLPSDGTTSP
EPDPEIPVAPEPAPLASPLVQEPGSSTTSATSGAVMASPPMPITTDNVAAISGVLRSLLDRPLPAPERPSFEGLKRQNPV
KFLRAIEEYGRFFGLDSQRLLGVAMDCLKGNAKHWTGIFQKKWRGYEDFRRDFLRTYWSAKRQRDIRFQIATGRYDETRG
TMLSHFAYYVDMANMLTTPLSEEVLLDELLRHFPERIQSLWVLEKICTTTDAAEFLAAQEIPGQNPGEKTNIAPRERPRA
TDHQRRNEPKRPRPNIDRHEVTRPAAPANRGNGFPKRSSDEQQWRNNQPSTSNNRWHNNNGNNSNNHWRKNNPNDNRNNT
SSRAQGETSRNSKNSGNGGGVQDGA
>GI:99755 reverse transcriptase (Ty1_Copia-element) [Arabidopsis thaliana] retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana retrotransposon Ta1 (fragment)
EEESDETVEEEQEPEPQVELPKTQTTSSLAYYQLAKDRERREIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDK
EWKKWKLATHEEMDSLIKNGTWVLVDKPQDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAPVVK
HTFIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEGFISEDGKNKVCLLKKLLYGLKQSPRQWNKRFNRFMID
QNFIRSEHDACVYVKQVTEQEHLYLLLYVDDMLIAGKNKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRM
SQASYIHNVVQRFNMAEAKVTRSPIGAHFKLAAVRDDDECIDNNVVPYASAVGSIMYAMIGTRPDLAYDICLVSRYMARP
GSIHWEAVKWILRYMRGSQDLNLVFTKEKEFRVTGYCDSDYAADLDRRRSVSGYVFTVGGNTVSWKANLQSVTALSTTEA
EFMALTEAAKEALWIKGLMKDLGLEQDKVTLWCDSQSAICLSKNSTHHERTKHIDVRYNFIRDVVEAGDVDVLKIHTSRN
PADALTKSIPVNKFQSALELLKLVKWD
>GB:BAA01703 ORF (Ty1_Copia-element)  [Drosophila simulans]
MDKAKRNIKPFDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEYLSDSFLNFATSDITARQI
LENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIE
TLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNKNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGH
IKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDSVELVPPLKIAV
AKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNVPVI
NFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRP
LFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEM
RQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMW
HNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVF
LKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESN
KYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVV
LNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVA
RGFTQKYQIDYEETFAPVARISSFRFILSLAIQYNLKVHQMDVKTAFLNGSLKEEIYMRLPQGISCNSDNVCKLNKAIYG
LKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKDNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEI
KHFIGIRIEMHEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLT
TAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKRNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLIC
WNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFARE
QVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQDDQSNAE
>GB:CAA37924 orf 2 (Ty1_Copia-element) [Arabidopsis thaliana]
CSIEKDRYCKSAAEMWETLNKQYMETSLPNRIYVQLKFYSFKMNDSKSINENVNEFLKIVAELSSLEINVVEEVRAILFL
NGLSSRYSQLKHTLKYGNKALSLQDVISSARSLERELDEQKETDKNTSTVLYTNERGRPQTRNQNQNKEGQGRGISKSNS
NAKLTCWYCKKEGHVKKDCFARKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWVLDSGCTSHMSARKDWFCNFRK
DGGTTILLGDDHSVKSQGQGSIKIDTHGGTITVLENVKYVPELRRNLISTGTLDKRGYKHEGGDGKVRYFKNQKTALRGE
IVNGLYILDGNTILSETCVAEGSKGKTELWHSRLGHMGLNNMKVLAGKGLVSKEEIRELDFCENCVMGKAKKVSFNMGKH
NSEYVLSYVHADLWGSTNVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCERKELVENQQNKKVKCLRTDNGLE
FCNLKFDAYCKDHGIERHMTCTYTPQQNGVADRMNRTIMEKVRCMLNESGLGEEFWAEAAATAAYLISRSPASAIDHNVP
EELWLNKKPGYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPSGTKGYKIWLLEEQKCVISRNVLFHEELVYKDTIEKE
RVVESEAEPASHSKSTLIKMKTPGNLNSGGVIQVSDEEESDESVDEEQEPEPQVELPETQTTSSLANYQLVRDRERRQIH
PPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEKNSLIKNGTWVLVDKPKDRKIIGCRWLFKMKS
GIPGVEPVRYKARLVAKGYTQREGVDYQEIFAPVAKHTSIRILMSVVVDQDLELEQMDVKTTFLHGELEEELYMEQPDGF
ISEDGENKVCLLKKSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHDACVYVKQAGEQDHLYLLLYVDDMLIAGKSKSEINK
VEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYIHNVVQRFNMAEAKVTRSPIGAHFKLAAVRDDDECIDNND
VPYASAVGSIMYAMIGTRPDLAYVICLVSRYMARPGNIHWEAVK
>BEL-644_AA#LTR/Pao 23-5940  [Aedes aegypti]
MATGGTPSPAESSCANCDRPNTVDDLVQCDRCKAWWHMSCAGVTHSVEGRAWNCSKCVSSTGSTGSVLSVPSSSRSRSST
KSKRAKLVLQMLQEEQDMRMKQLKEQQDMEKSFLERKYALIQAALEEEEQEDGVSVRSRSSHRSNVRKTQQWVNELGEAN
EDTAAALPKIADPAPDPQKKGAIPKHSRRLDFTESTPQNICKDKEEVAIEQIGHNDLPESIPLRAQHGEQQVQAAAPPPW
PNSFALDLQKEKDASRRQNLRRVEYPETASQWFDVRPSNSGKLDPKPPHPGKSDLQTSTLPTHANDETQLSSIEHLTKQF
GLVSVENMNLPDNINAFTPTPSQLAARQVMPRDLPVFSGSPADWPVYISNFMNSTLACGYSPAENLIRLQRSLKGPALEA
VRSRLLLPESVPHIIDTLRLLYGRPELLINALIEKVHSVLTPKAEKLESLIDFGMAVQSLSDHLEAANQKAHLSNPSLLI
ELVDKLPVHMKMEWVKFVENKGEVNLKVFGEFMSGIVKSASQVTLYTGMASRVKKSEVEDKWKQKRVAVHSHQLESPPAS
SGDGSDKACPACRQKNHRLKDCGVFRSYSIEGRSRFVQQHGICRNCLNAHGRRACRNSGVCGVNACPYRHHQLLHFPRSN
VSAVENHVHREIHPSLYFRIIPVTICGGGRSIEIFAFLDDGSQLTLIEEGLVRQLGVEGMELPLCLKWTGNMTRTENGSR
AVSLSITTDDKRLFELKEVRTVKSLTLPSQTVDYDYLATKYSHLRGIPMKSYSAAVPRLLLGVDNLRLTVPLKTREGKIN
EPVAVKTRLGWCIYGGQAQSVTASLNYHYCECSADQALHGLVKEFFAAEDVGTRSPPPIVSEDDRRASELLETTTKRTGS
RFETGLLWRFDNFKLPESYGMALKRLECLEKRMEKQPELRANIAKQINEYVAKGYVHRATEEELRFADSKRVWYLPLGVV
FNPKKPNKVRLIWDAAAKSHGVSLNDMLLKGPDQLTSLPAVLFRFRQFAIAVSADIAEMFHQIGIVEGDRHAQRFLWRED
PFTAPEVFLMNVATFGSTCSPASAQFVKNKNALEFRQQYPRAVQSIVKNHYVDDLLESFETEEEAAKVIQEVRMIHAHGG
FNIRNFQSNSPVVLDSVGEKSASNPCSLDLHQAERSERVLGLLWTPHEDMLGFSTIMPDEIQKVISTGVAPTKRQVLKCL
MSFYDPLGLLALFTVQGKIILQAIWRSNTQWDQQIGAVIRNRWQQWIQILVDLQHLHFPRCYFDQATLKYYQHVQLHIFV
DASEEAYAAVAFFRIVDPQGRVCCSLVAAKTKVAPIKPISIPRLELQAAVLGVRLMQWIVEGHSIRIEKKVFWTDSSTVL
SWIKSDKRRYKQFVAVRVGEILTETNVEEWRYVPSKKNIADAATKWGKGPDLNPDGVWFKGPTFLKDIESKWPVTPKLKE
DDVEVRPIFVHQAVPVVKLVIDLERFSNWNRVLRTTAYLLRFISRSRKRTVPQSTYLSQEELAAAWRYLICAVQWDSYPD
EMVTLTNNLRNPSGQMRALDKTSSLYQLSPMLDDCGMLRVDSRIQAARNVLNDTKLPIILPRKHKLTHLIIESFHRKYLH
GSPETVVNEIRQLYYIPKLRTMVRLFTKECQLCKIKRAQPQIPRMAPLPSARLASFIRPFSYVGLDLFGPLLVKLGRSNA
KRWIALFTCLTIRAVHVEVVYSLSTDSCVMSVRRFVSRRGAPVEIHSDNGTNFRGADRLLREQIQNINEAMAETFTNTTT
KWVFIPPSAPHMGGSWERMVRSVKVAMEAANGGRRLDDEGLITLAVEAEGIVNSRPLTYLPLDSEEAEALTPNHFILGSS
SGVRQPAMKPADEAVALRNSWGQIQVQTDVFWKRWTREYLPTLTRRVKWFGEVKPIAVGDLVLVVEETRRNGWTRGRVCE
VYKGQDGRIRQAMVQTSGGLIRRPVSKLAILDVAQVGKTGPGTSGDQCYGEE
>BEL-636_AA#LTR/Pao 2028-7301 [Aedes aegypti]
MLGAGKSPSLRALQLKLKEVLLMFNDIQHFVSKYRAGTSAVQIQVRLSKVDELWKMFSDTLVEIMSHEDYVADEEKYAKE
RQQFSAQYYNIKAFLLEKLEQIQRAAMDHSTNVHDSSTLNISEHVRLPQIKLQTFKGDIDEWISFRDLFISLIHSRTDLP
DVEKLHYLKGCLMGEPKGLIDPLAITAANYNVAWNLITKRYDNSKQLRKRQVQALLNMPYIAKESVSELQTLVEGFERIV
QTLDQVVEVAEYKDLLLVNMLSSRLDPITRRSWEEQSSTKDKDTFKDLVDFLQRRIQVLASIPARSSDSKVSSTNASRQR
AVVKASFNSASQSSTSCACCSENHFLYSCPAFQGLSVRDREGVLRKHSLCRNCFRFGHQGKDCRSKYSCRTCKGRHHTLV
CFKQNADTVSTVGNSASNCPPDNGEPSCPGTNTVASVATSEISVCNAAGAASQVFLATTLILVEDNEGNQYGARALLDSG
SECNFVSERLCQLLKVVRSKTDVRVQGIGQTTSLVKHQVQIKVRSRVSSFARSVNFLVLPKVTVNLPTTTVDTRELVIPE
GVRLADPGFFKSSGVDMVLGIELFFSLFDIDRKISLGDNMPTLIDSVFGWVVCGTMAMPKAISQVNCNLSVKDRLENLLT
RFWECEEVADQIKSSPEETLCEEQYQESVKRAEDGRYIVGLPMDGVKLQRLGESRDIALRRFYSTERRLDRDSNLRQQYV
AFMDEYLQLRHMKEVQEIASEGSKRCYLPHHPVVKEASTTTKVRVVFDASCRTSNGISLNDALYAGPVIQEDLRAIIIRG
RTRQIMVVADVEKMFRQIWIRPEDRHLQCILWRSSPMEDVRTYELNTVTYGTKPAPFLATRTLQQLATDEGRRFPSAAVA
VREDTYMDDVITGADNVEDATRLRCELQDMMEAGGFHLRKWASNCSKVLEGVPVENLAIPNTEEITLESNPSITTLGLVW
VPGTDKLRFKFQVPQLNPAELLTKRKILSTIATLFDPTGLIGAVIVEAKIFMQRLWTIEGEDGQRLDWDQPVPPKVGEEW
CKFYEHLPRLQEVEVHRCVIIPAAVIVEVHCFSDASMKAYGACIYLRSQDSSGNILVRLLASRSKVAPLKTQSLPRLELC
GALLGTQLCQKVREAIRFKGEIFFWTDSTCVLRWIAATPAIWTTFVANRVSKIQALSDGCHWGHVKGTENPADLISRGLN
ASNIIDNALWWSGPFWLQHPQEQWPVRDAGTNEEGEEERRRCATANTVSTCDEFNQWYIAKFDSYDDLIRRTAYWLRMME
LLKQPKDQRKNEEFLTIVERKRAEQVLIRRVQMEAFPEEWKALSKGSSVSAKSPLRWFHPYISKEDGLLRIGGRLNHSQE
PENKKHPPILPARHMFTRKLLQSFHERLLHAGPQLLLATVRLHYWPLGGRSLARQLVHKCLRCYRSQPSTVQQFMGDLPS
SRVTVSRPFSRVGVDYFGPVYVRLGPRRTAVKAYVALFVCFCTKAIHMELVTDLSTERFLQALRRFISRRGKPSDIFSDN
GTNFVGARNQLTELMALPRNRDCHEKISKECNAEGIQWHFSPPSGPHFGGLWEAAVRSAKKHLLKVLGENVLTFEDMNTL
IVQIESCLNSRPLTQLTEDPEDLTPLTPAHFLVGSSLQGLPEYDYTEIPFNRLKQWHAVQQKFQHFWIRWKREYLAQLQG
RMKRWKPPVEIETGKLVIIQDDNQPPLRWKMARIHQLHPGDDGVVRVVTLKTSNGYLKRPVERICLLPLPNQDVVVQP
>BEL-646_AA#LTR/Pao 51-6811 via tfasty with BEL-640_AA, 7 frameshifts and 1 stopcodon. [Aedes aegypti]
MMSHHSTTNKKDGCAGCNRPDEADNLVQCDACDVWWHFSCAGVTGSIADRSWVCTRCKRSSRASSRVSVTSRSSSHLAES
MARLRERQELEKQRAEVELERKFLDEQRRLLEASIIAEEERRSQASRGDSQRRVRDWIENSADRETGAAGGNSLPAATTI
QQQNSILRQEDSEAAAVKDVEKELPSEFPSNLDSQHHSSPLRDRTIPAFETCDISELQPFPEVNQHNAKDLIRELRVRLE
RCLQQSEPTSPQMADLQQQLRLCREEIEGMHSTVYRLTTVPTPTTQMEVVQPRAATLGAVPKQRTNEISSGKCHASESQT
DKAHKNHVLQPTSFPTMQNPLTEQQRIAHARSNPIFNNVLLEKPTVTQCTPLPSTKTQPSHPLRQQTQYALVYQPFVQQQ
SLRPPLEQPPVQQPSVQQFSVQQLQAAASSAAASMPVASERQPPVQQPSVQRSLVQQPSVQHLQCSSLQCSGLRCSNLRC
SSLQCSSLQCSSLxCSSLQCSSIQCRNLQCNNCSTTTPDTATSSATTTREQYTAQQPPIHQFSVQPSSVQESSMRQPLVQ
QYSAQQYVVQPPSLQQPLTQPPSAQQYTMQQPVVRQYLAQQPLLQQSQVGASPSPVVVPDMNDLERGMDEPPTQQQLTSR
RSLARDLPTFSGDPAEWPIFISNFEYTTRTCGYTNGENMLRLQRCLRGRALESVRSRLVFPAAVPQVIETLRMRYGRPEL
LINVLLQKVKAMPSIRGDKLESLIEYGMAVQELCDHIEAANERAHLSNPTLLQELIGKLPADQKLMWAGFKRGRALVDLE
TFSEYMSGVMQDASSVVVYEPDSRKIGGREKTKGYANSHITKVDGTSSSTPTQNKPSECLHCDKEGHKLRECQAFRTLSV
DDRWRRIRTLNVCQICLFSHGRRACRINNRCNVSGCQFKHHPLLHGKSTTPSTQIGNTHTHQLLDSAVLFRIIPVTLHGK
SGKINTFAFLDEGSSSTLVDGALVAQLGLSGEPNPICLRWTGNTSRVEKDSQLVTITISGMEQKHLYKLVDAHTVRNLNL
PTQSFELAEAAKKFAYLKQLPIQSYRNARPEILIGVDNIRLAVPLKINEGDGSGPIAVKTRLGWCVYGRQGPQSNEGFSF
HICGCTKDDELHETVKQFFAVEESGVKYLETSLSAEDKRARELLESTTKRVGTHFETGLLWKDDEIELPDSYGMALRRHQ
CLQRKMERQPALKENINRQIKEYVEKGYAHRATSADLDTADPRRIWFLPLGAVTNPNKPGKVRLVWDAAAKVSGVSLNSV
LLKGPDQLTLLPAVLFRFRLYSVAVSADIEQMFHQVGIRPGDRNSLRFLWSENSDGPVEIYLMDVATFGATCSPASAQYV
KNLNAMEHLQQYPRAVEGILKSHYVDDYLDSFGSESEAKKVSAEVRLVHHNGGFHLRNWRSNSESVTATLGESAKEDSKN
LYLESGEHVDRVLGMLWSSSTDELSFSTSMSEEVRQLLRNGTRPTKRQVLRCVMSLFDPLGLLSFFIIHGKVLIQDLWRA
GTEWDEAVGEEVFDHWIRWTKMIEFVASIRIPRCYFPRATEETYKAAQLHVFVDASEIAYSCAVYIRTAARDGAFQCALV
SAKTKVAPLKPMSIPRLELQGCVLGARLLKFVQDSHPIAFSKRFLWTDSTTARSWIRSDPRRYKPFVAHRVGEILESTDA
NEWRWVPSKLNPADEATKWGRGPYFSRDSQWFNGPEFLRHPEEAWPRRDDEIGSTAEDIRPSVLFHFAVDTTLNFERFSS
WNRLLRATAYVLRFLFNITKPEQKLRGPLAQPELLSAECTIWKLVQRESYPDEVVTLEQNKSDTQKTPLDRKSNLFKLMP
ILDEAGLVRQRSRIIAAENVTYDARYPIVLPSKHRAVNLLIEDYHRRYRHGNNETIVNELRQRYTISNLRRLVKRVAFSC
QLCKIRKARPSNPPMAALPPARLAMNVRPFSYVGLDYFGPLLTKVGRSNVKRWIALFTCLTVRAVHLEIAYSLSTASCIS
CVRRFIGRRGSPIEIFSDNGTNFQGAERILREQIGKELSMTFTNTTTKWSFIPPGAPHMGGAWERLVQSVKSAMKDAYAE
GKLSDEELQTLVVEAESIVNSRPLTYLPLDSEESEALTPNHFLLGASSGAKQSGVGVGESQKHLPDTWRGIQCQLDKFWQ
RFLVEYLPVIRRQPKWFDETRPLQVGDLVLVADGARRSEWVRGRVTQIFEGSDGRVRQAAVRTRQGIFRRPTTRLAVLDV
HGQGAAPEDAGEHRGE
>BEL-650_AA#LTR/Pao 36-6320 via tfasty with BEL-630_AA, 3 frameshifts and 4 stopcodons. (all problems before pos 1188) [Aedes aegypti]
MPGSATIPGSGMPMHQQHPEGTDLQRESDPNPNVEVMTVPAASIDTRSRRSRSSRASSRALRASLDLQRLEEEKRLEKEF
IARKYEILQAQLEDGEGSGSSGRTRRSSHGSSQRTHDWVQSQLVPITSTTTGPTTIPVVTQSRTGTIPKDVSPVVVPVSS
SAMIMDESNAIDMRFCPSTRPSGSSGATDAANCRLIVCSDTSSACTSAGKEQRASFSDEYQHRLxWCSRWLHNNFDGSSC
TADRGEFLCLANTYTRGFDGAAxRVAETCGRSSTTADExDRPPNSGFCSASDSARQFQPTQSSTVSGIAEYIIKPPNVPR
PARIAAYEFPISDGNICVTSSVSQTCSNTISTFAPQLNAVSSSIPYRLELLIVxIKHLLRLPGQLTSPHSAFVPAHMSTP
QAQSTPPSVHTVSSRLSPITSSMIPTSAPIAASMSAASDVARRQLFGGPNSQQLAARHVVPRELPAFTGDPVEWPLFLSC
YQNTTDMCGYSDGENLMRLQRCLKGNALEAVRSHLMHPSSVPMIIDTLKTLYGRPEQIINALLTKLRATPTPKPENLESL
IGFGLACKNLCSHLQAAGLQEHLSNPLLLQELVSKLPATLKLNWSLFKRQQANANLTTFGCYMDQIVTAASEVTFINETD
GHRSKQEKPKTKEKMFVNTHASEEKKASYSITDRKENKPKPCVACQKDGHKIKDCHVFQKMTLGDRWRLVQERYLCRRCL
GSHGKFPCKASFCGENGCEDRHHKLLHPGNPQLPRSSEPPRTTSTVTVHRQFKQPVLFRILPVSLHWNGKTIRTFAFLDD
GSSRTLVESRVAEELGVTGDVHPLCLQWTSGIERMEDESQLIQLQISGAMNTTRFDLKEVHTVKSLNLPVQSLDFSELSR
QFPHLQGLPVQSYTGAVPTILIGLDNSFVMATRKSREGVKGSPIAAKTRLGWAVYGSTSPDAERSVHPLFHISVRSPDQE
LHDLVKEFFAMESVGTISSTMESDEDRRARKILEATTVRTESGRFQTGLLWKYDDVEFPNSRPMAEKRFRCLERRLASKP
EPYDNVKTQISQYQEKGYAHKASEEELASFDPKRTWFLPLNVVTNPRKPNKVRLVWDAAAKVQGQSFNSALLAGPDFLAP
LQAVLSSFRQFEVAISADICEMFHQILIRPEDRSAQLFPWRDEPSKPFEVFVMDVATFGSTCSPCAAQFVKNRNAEEYSE
QFPLAAEAIIKHHYVDDFLCSVHSEQEAVELAEQVKLVHSKAGFVIRNWLSNSKSVLTRVGEQQAVPEKKTWTDRSVANE
RVLGMIWKPEPDVFVFQGVFREEIQALLLDDTVPTKREVLRVVMSIFDPIGLVAVYVVHGKVLVQHIWRSGIGWDERIPD
GLLEQWKRWIKLLQQLDHVEIPRCYFPGYSPEHYRAVELHIFVDASEEAFAAVAYFRIVEGSRVRCSLVSAKTKVAPLKL
LSIPRLELSAAVLGARLAKSVMENHTIPISHKVFWSDSCTFLSWLQADPRKYRQFVAFRLAEIRELTRVNEWRWVPSRLN
VADEATKWGKGPEITSDSRWLLAPKFLYQHPDLWPQQTIKEHESLEELRPIHLHCDIGKEQLLEFTRFSKWERLIRAVAY
ASRFLNNLRCKIKKQPLNNTEWLSRDELLKAETFVCKQIQREAFGDEFAILQGNKDRPVAEQMKLEKTSKIIKLSPFLDE
QGVIRMDGRIAGAQQVSFDFKFPIILPKGHCGTKLIVDWYHRQYKHCNSETAVNEMRQRFHVSEMRVAFKQAGKQCQWCK
IYKAVPEIPRMAPLPQARMASHVRPFTYVGVDYFGPMLVKQGRSEVKRWVALFTCLTIRAVHLEVVHNLTTESCKMAIRR
FIARRGAPREIFSDRGTNFVGANRDLKMELRQINTNLASTFTNTDTQWRFNPPSTPHMGGSWERMVRSVKSALASLSTGG
KPDDETLRTLLAEAESIVNSRPLTYLPIDSEEQEALTPNCFLMLSTSGVNQPAREPIEERTMARCNWDLCSQLLDKFWTR
WIKEYLPTITKRTKWFKDCKPVQAGDLVVVVEDRLRNGWLRGRVLRVFPGSDGRVRNAEVTTASAGVLVRSVAKLAVLEV
GGTVEVNFDQYGSG
>BEL-648_AA#LTR/Pao 23-6175 via tfasty with BEL-617_AA, 3 frameshifts. [Aedes aegypti]
MPKDDAHDCGACNRPNSADVGMVSCDGCKVLYHYTCAKVSPGVLKRSWRCSTCQTEPPAEPTGTKKRGVRKQSASLTVLG
AASSEIPKSSAASQKDLEKSKASQQSKTSEKSITVVVPIPGTSGVITPKKNPEVPTVATHGEKKSTKSSTSTAKARAQLA
LQRLEEERLLEEQKLMDERARVEEERIRLEKEKQLKEQEHAIKAKELAMREKYLRDKFELKEQIADEESSSNSSPISSRT
RTKAWLQDQQKLKPIQDDNSVTHKSEYNLQNIEAGSNRLQPPSVVRSYRPRPPSVVGPTQLQPADLENDRQVEDLRFNAP
LGFPNQRGDFGNEMQPVALEGVPNLQGNREGCENRMQPEDYLPSAVQNEAGFNAGMLPALGGCLEGPMNEMRPGLHGAGP
NANQIAARQIWPKKLPTFSGDPEDWPIFVHSFETANVACGFTDVENIIRLRECLRGAARDAVVTKLMFPQNVRTIMDTLR
RLFGRPELLVKNLLNKVHRAEAPKPERLDSLINFGLTVQQLCDHLEAANLRSHLSNPTLLGELVEKLPASIKLEWARFKR
AHADPTLRHFGMFMEELVNDASEVTMPIQQKSAVSRADRDKLKEKGHVYAHEEVADSQSRSKERQPCPICSKIDHRVRNC
EQFQKLSLDARLKAVERWKLCEVCLFDHGQWRCRSRFRCNVGSCRDRHHPLLHRPKQEQRPSQSQASECHTHQRPQRSVL
FRIIPVTLFNENRKCETFAFLDEGSSLTLVEAGLARQLGANGVAEPLELLWTSSVMRNENDSKRVDCEIAGKGLPRRFAL
KNAHTVEELKLPNQSLAMKELSERYPHLRNLPVSSYSEAVPRILLGLENLSLFAPLDSCVGRPGEPIAVKSLLGWSVYGP
VGNGRAKEGFVNVHECNCGADRELNDLVRQQFILEDSMIRSTPPLESTDEKRAREILECTTKFVDGKYETALLWKADDVE
LPNSLPMAMKRLKSFEAQLAKDPSLRDAVNQQINDFVQKGCIHKATEEELIEISRRQVWYLPLGLVTHPKKQKKRLVWDA
RAQVNGISLNSQLLKGPDLLVSLPSVICKFREKRVGFGGDIREMFLQLRMRTSDKYFQCFLFRSDSQQPPEVYIADVAMS
GATCSPCVAQHVLRVNADKWAKEFPQAAAAIKDKTYMDDYYDSADTPEEAAELAVQVRTIHAHGGFEMRNWVSNSAEVLE
KLGESGRRGTANPAIKCEERWERVLGMLWHPTDTLTFSTELGEQLLPYVSGGKRPTKRTALKIIMSLFDPLGLLAPYLIH
GRTLIQDLWRSGIQWDEQMKDDEHENWKRWVKLLPGIKDLSIPRCYFGDVDPRCYKSLQCHVFTDASEVSYGCAVYFRIT
DEYERVHCTLIMAKSRVAPLQHLSIPRLELEAAVLGAKLLNTVMTNHSLKPRKVYLWSDSSTVLSWIRSDHRRYKQFVAH
RIGEILSLTQTENWRWVPTKENIADCLTKWVDDTEPDSNGSWFKGPAFLYHPEDLWPQQRVKANTQEELRSRYLLAHISV
PIRMIDPSRISKWTVLLRTVACVYRFISNCRLRIAGRPIEAIPVTRNQEKLLKRTVAAQVVPLKQEEFQQAERFFWRMVQ
GEYYPDEVRTLMNNRDQPIDKWTPVEKDSPLYRFSPFADEYGVVRMEGRTADAAYASFDARFPIILPKDSPITQRLLEHY
HHRYGHANKETVVNEVRQRFEIPHLRSVVEKISRNCLSCKVNKCKPHPPRMAPLPEQRLVSNVRPFSYVGIDYMGPLEVS
VGRRKEKRYVVVFTCMVVRAVHLEVAYDLSSDSCIMAIRRFTRRRGSPVEIFSDNGTNFVGASRELQKQVERIDLECAGT
FTDARTKWSFNPPSAPHMGGVWERMVRSVKEAMAALEDGRKLTDEILWTTLVETEGLINSRPLTYMPQEPDNPEALTPNH
FLLNSSSGAHEPLEPPEDLGQALRSSFARSQQLADVAWERWSKEYFPTINERSKWLNEAKSLKVGDLVYVAEGKRRSWTR
GIVDEVFPGKDGRIRQVIVRTASGKLKRPVVKLAVMELGGSTESPPVDPRGG
>BEL-625_AA#LTR/Pao 679-6044 via tfasty with BEL-21_CQ, 1 frameshift. [Aedes aegypti]
MASDLRALLKRERLLQQKVTIVEKFVAAFDKDRDECEVEVRLKGLNEVYLEFFVLREKIELLMEDEEEEEEDEDESDLLK
KGSSGGKDAHTREQENFRVAEEFENRYCKVKSALLKLLPPKDPVRRDCGIPADQTAAHSKVKLPEISLPTFSGKLGEWVM
FRDTFRSLIHLNGQLNSMDKFTYLRTSLTGDALKEINTIELSAANYEVAWKVLLERYENKKLIVKAYLDTLFSLEPLKKE
SYDGLNHLVSEFEKNLQMLDKVGEQTAQWSTILAYMLCARIDTATLRLWEAHHNSKEVPKYQDLVTFLRNQCAVLQSIAP
SKSTSSDQRPTKFAVCHAVVKMSNKCPFCGEFWHSPFHCNKFQKMKVTERNEAVMRSKLCRNCLHPGHISRTCDKGVCHH
CQQKHHTMLHFNPVRSSVPPAQTRSQEASQPQRQPQSNPQQPNQQAHTQSNNAPTHTANSQINRPQPSTSQASTSHNYVA
LPKTPTHNILLSTALVRVKDRFGNVLLARALLDSCSQHCLMTKEFSNKLKFRVSPTFLSVQGIGSAQSVSTKRVSAEVSP
RSRMISPFEEEMQFFVLPKLTVSLPTSSFSPSEWSLPETALLADPDFHESGPVDVIIGAEHYLDLLADGRLKATENGPTL
QNTVFGWIVSGRVPDCPISVSRSIVNVCSTAELQDQLTRFWEIETCRSISTHSVEESACEENFAKTTVRDDTGRFVVALP
KKDFLIEKLGESRSTAIRRLNSLERRLSADSELQHQYSEFIQEYLDMGHMVEVTEDCEGVAYYMPHHAVFKPESTTTKLR
VVFDASCKTSTGVSLNDALMVGPVVQDELININLRFRLHRYAVVADVAKMYRMIAVSEHDRKLQRIVWRGSSDEEIRTFE
LTTVTYGTASAPYLATRCLKQLAEEGEESHPMAAAVLKEDFYVDDMLSGVDEIDEGKQFVEEMVDLMQSGGFTLRKWNSN
CEEILRHVPEHLHDDRTILTLDTSDSTVKTLGLQWEPRSDVYRFSTPKWNESDAVTKRTVLSDISRLFDPLGLIGPVIVQ
AKLFVQELWKRECSWDSPLSEDMRERWLEYRRNMIGLDGIRIPRWIGVTTSRESVELHGFCDASRKAYGACIYIRTVAAD
GTVDVRLLTAKSRVAPLENLKKKKKSLSTPRLELSSALLLAHLYEKVIDSIHMTVESHFWTDSTIVKYWLSSVPSRWKEF
VSNRVSEIQHITVGGTWNHVPGMENPADIISRGMAPPQLQYESLWWRGPHWLLQERANWPTAEPDTSELHPSLLEEKGVI
SALLPSTEPSEIFGLRSSLTELVKLVAFLRRFCFNARSANRDNRKQGQLTLVERDEALRLLVRLAQQESFPQEYTELSRG
RSVQDSSRIASLNPEMVDGIICVGGRLRNAKVPSSRKHPYIIGHHHPFAMLVMTEYHRDLFHAGQQLLVSTVRGKFWPTN
ARNLARKVIHDCVRCFRVKPKIHEQLMADLPSERVTPCSPFQRVGIDLCGPFQVKYPQRSARPVKCFVVVFVCLVTKAVH
LELVADQTSQAFLASLRRFSSRRGKPSLIMCDNGRNFVGAKRELAELRQLFVNQQFQNAVVQESSKDHIEFRFIPARSPN
FGGLWESAVKSFKTLLKRTIGSRTLQYDEFQTLLTQIEAVLNSRPLTPVSNDPSDYEALTPGHFLIQRPLAAIPEPNLDG
LPENRLSAWQTVQHFVQLLWRNWSTEYLSNLHNRTKWTKKRDNVKIGTMVVLREENQPPLSWLLGRITEVHTGADGNIRV
VTVRTKDGSYKRAISKICILPISDNVQSA
>BEL-215_AA#LTR/Pao 540-5904 via tfasty with BEL-37_CQ, 2 frameshifts. [Aedes aegypti]
MSDNETPRGVLKGISKKNLLETLTESHSENVPPVPSVADQKIAKQVFEQKKMMESKLEVLTDRRDLIMEKLMRMKETLRG
EGVSIHLLNLHLETLRRCADEFDKIHAEISALLPKEQRTAVHQEYAVFEDVHNQLYVDLQTGIARAQEACRMNPGISNSL
SIPGFQQPIVVQAAAPQLHAPFPKFDGTPENWYSFKSLFKSIMMKYPNETPAMKILHLRNSLEGDARSKIDQDVVNNNDY
EKAWKILEDAYEDKRLILDTHIDAILDCAAISKDNRGKSISQLVEICSKHVDALDGHSYPVEGLGELILLNILYKKLDKE
TQEQWEMKVPRGEVPDYETFMEFLRERGRVLQRTNRSQQQQVQQSTVQARQRVTAGYKATAPSVKSFVQTTREVCPCCQA
EHAIYKCSKFQNMDYSERKSFATRAGLCYNCLKQNHRVSDCQSDQGCKVQGCGRKHHSFLHPKDEIRRSEEKISKPEVAG
EESGPNEQEIPCATTMCAQIDTAKQQVLLSTAEVLVVGDGGCTVKCRALLDSGSDSHILTEKIARKLKLRMHRVDYPISG
LNDIQTSAKYLVSTKIRSRINSYVTSDLDFLVISRITSHLPLVETDIKSWKIPQGVQLADPSFHVPGEIDMIIGNEVFFD
LVKKGRLKLENSAIMLAETEFGWVAGGSVPVTKAAPRARICQFSHQERILNETMTKFWEIEDVCHSSKLSAAEASVEQHF
KETHARDDQGRYVVRLPFNDKKFQLGDSFVMARKRYERLMLSLSKNPEKRMQYSEFMAEYLVLGHMKEVNVPEGDGYYIP
HHAVYKASSSTTKTRVVFDASAKSASGVSLNDAVMVGPTVQSNLVEVIMRFCGHQVALTADVPKMYRQVCMHPDDCKYQR
ILWCNDQNEMKVFELQTVTYGIASSPYHATKALMQLVEDDGDQFPLASVVIKKDSYVDDFLTGGQTARTVINKYQELSAL
LDRGGFGVHKFCSNSQEVLAAIPEQLHEQQVSFEESGINNTIKTLGLIWNPAEDYFTFRVQPIDGRVSSTKREVLSDIGR
LFDPLGFLGPVIAMAKMVMQDVWRLRLDWDDLLPDELLCQWQHFREELPVINQKQKRRCVVRDRASWTELHGFSDASKRA
YGAVVYTKCIAADGTVEVNLVASKSRVAPLKPMTIPRLELCGVKLLAELVQKVTTSMTIDFDEVNLWCDSQIVLCWLKKS
PLTLNQFVANRVAAILELTPGCSWCYVRSEENPADIISRGSMPEDLVRNETWWNGPPLLWQQAYEGQTPDELEEALIPDI
KPARSLAIISKISPINLNRVSDFRKLQRSWVYVLRFIHLKKKKNVISVTADEMAIAEKMILKLVQKEMFSELLKQLQLKS
GMRHNLSNLAPFIGEDGLIRVGGRLKYSAIPYDGKHQVLLPEKHHVTEILVRKLHEENHHVGHGGLLAIVRERYWPIKVK
LVIKKVISKCQVCGRCNPAPGIQFMGNIPESRVNPAPVFSKVGIDYAGPFMLKLGGRSPKVYKAYVVVFVCMAVKAIHFE
VVSNLSTDNFIAALHRFVGRRGLPSDIYSDNGTAFVGANHELVALKQLFEDQQHQHKVEEFCAVKGISWHFIPPRSPHFG
GIWEAGVKSMKHHLKRVVGETKLTYEELTTFLAQTEAILNSRPLVPVSDDPNDLSILTPFHFLIGRSGLTVPEPSYKDEK
IGRLSRWQHIQLMQQHFWSRWSKEYLHHLQTRHKWNNSVQQINVGALVLLLDENVPTHQWRRGRIAAVHPGDDGIVRVVT
VHTTSGDYKRAITKIAFLPAVEPEDSTGG
>BEL-98_AA#LTR/Pao 255-5546  [Aedes aegypti]
MSSAERRIRYLKLRQRSISASFTLIKGFVDRYDEENDAAEVPVRLESLVELWNDYTKVQAELESLDEASIEEQLKQRMEM
ESHYYRVKGFLLNKSPIAPPPSPTTSTNAQAHSPTTHVRLPDVKLPVFNGTLEHWLNFHDLYMSLVHSSQDLSSIQKFYY
LRSSLSGDALKLIQTIPISATNYPVAWNLLVEHFQNTGRLKASYVDALFEFPTLKRESAGELHTLVERFEANVRILQQLG
EQTNTWDILLVRMLSSRLDQTTRRDWEEHSSTLQDVSFKELTTFIQRRVNVLQSINHKPSDTCTPSSAKKPPTPRSFASH
GASQLNARKCILCSEQHPLYMCPTFSKMTVEDKEKEIRRHQLCRNCLRKGHMSRECSSNSTCRRCKGRHHTQLCNHESSN
ESSQKTSDVTSKPTQFQSASEQPTTSASATHMHPKGYASTGRNHAKVLLATAVVHVVDDNGTFHVARALLDSGSECCFAT
EPFSQLLKVQRKRVSIPIAGIGHSTTQARTKFTSTIRSRISDFSASAEFLVLPKVTVNLPSTSLDISSWEIPSGVKLADP
SFCTSNTVDLVLGAEIFFDLFKVPGRIPLGDDLPMLINSTLGWVVSGRSNHCQPSTTITANVATMADLHQLMERFWTIEE
DNSSPCHSVEEAACEAHFRRTVSRTPEGRYVVRLPLKDDVISNLGDNRRTAIRRFQMVESRLQRNLHLGQQYSDFMKEYY
ELGHMQRVQDTGEITTQTYHLPHHAVVREESTTTKVRVVFDASCKTSSGTSLNDAMMIGPIVQDDLRSIVMRARIHPVML
IADIKQMYRQVLVDERDTPLQRIVWRASRDEELETYELKTVTYGTASAPFLATRVLQQLADDEQHDFPEAATVLRKDFYV
DDLFSGSNSIAETIVLRKQLHSLLARGGFELRKWASNEPAVLDDISDDNKALQQSVDLDRDQLIKTLGLHWEPNADVLRY
NVKLPQSIPNATLTKRLALSYIAQLFDPLGLVGPVVTTAKLFMQALWTLKNSDDNIWGWDEELPATARDYWQSYHEQLPL
LNQLKIDRFVLCPDATTLQLHFFSDASESAYGACAYVRSENESRQVKVALLTSKSKVAPLKKQSIPRLELCGALLAAQLF
EKVTSSLSMRPETYFWVDSTTVLSWLNCSPSTWTTFVANRVSKIQLSTTNCIWNHVAGEQNPADCLSRGTSAELLLSHDL
WWHGPEWLHRDQTEWPSVHQTTSNPQSVCEMRKPPATIVSATIEDSFINCYVNKFSNYQRMLRVTAYCKRFLQNCRLSNQ
HRPASHVVTTEEKKEAELTLIRLVQEQAYPNEWKCLQQGKPVAVKSRLKWFHPILDSENLIRIGGRLRRSQQAYDSKHQI
ILPSTSPLSALLVRSLHEQHLHAAPQLLLGILRLRYWITGARDLARKIFHKCTICFRARPKRIEQFMSELPTARITASRP
FSSTGIDYWGPILIQPAHRRASPRKAFVAVFVCFCTKAVHLELVADLTTAKFLQALRRFVSRRGLCSDIYSDNGRNFVGA
ANELRHLIRSKEHREQIAQECAHNNIRWHFNPPKASHFGGLWEAAIQSAQKHFIRVLGAQTLAYDDMETLLSQIECCLNS
RPLVPISDDPSDLEPLTPGHFLVGSALKAVPDVDVTSIPFNRLKKWQQTQKLYQQIWERWHRDYLVTLQPRAKWCNPPVP
LQRNQLVVLLDENLPPMRWPMARIQDLHPGPDGVVRVVTVQTSTGIFTRPVAKICLLPIAPIMPPAENTSQTTTNSAPKP
ASNP
>BEL-223_AA#LTR/Pao 294-2840 (fragment) [Aedes aegypti]
MPTERRIRALKVRQKSLVASLNLITAFVEDFDEETQANEVPVRLESLTQLWSDYNLNQNELETLDEAAIDVHLKERTLLE
SHYYKVKGFLLAHNKSPINQTLSSPTHSSLQIPPSASHVRLPDVKLPIFDGNLENWMNFHDLYMSLVHSSAELSNIQKFY
YLRSSLSESALQLIQSIPISAINYPVAWNLLLEHFQNPARLKQTYVDAIFEFPSLRKESASELHSLVEKFEANVKVLQQL
GERIEHWDILLIRLLSTRLDPTTRRDWEEFATNKAAVTFKDLTGFLQRRVTVLQSLQPKTVIDTQSSIPLKKPAQRSASS
YGANQVNLRKCVICXDSHPLYLCESFANLPLEEKESEVRRHQLCRNCLRKGHMSKDCSSSSNCRKCRGRHHTQLCSIDAA
LSSESTSSSYHSSPTTETPSTSGLPSLSASATRTESISCASSGCTQKTVLLATALIDIIDDEGNKHTARALLDSGSECCF
VSEQFAQRIKARRKRINMPITGIGQATTYARTKFVSRILSRVGEYSTNIEFVVLPKVTVNLPATSIDTSYWNMPPGIKLA
DPTFDCTNPVDVVIGAEVFFEVFRSPGRIPLGNNLPELVNSVLGWVVCGKSDINRSTPIVANFAIIARSSIATLTEHLPH
PKETRGTKSSIKSNFQGQQASPTSRRHHTEADTKSSRNQAQLRVSTPIATSALNEVTTLTQEIVVKPSYRNASSDSADIN
RSIHANGSNRQLIHATSFFNQNVTLLQLTALNRIERDNSCQQHRSFTGARAVTNQQQLHRCLSSNSPPPVNKLKENVFTA
KNYQLRSASSSSAKGANLSTVSQQHNLNETVMCPLIPLTRPIIGQKRIG
>BEL-600_AA#LTR/Pao 36-5937 via tfasty with BEL-30_CQ, 1 frameshift. [Aedes aegypti]
MESSCGKCDNPDNDEMVACDSCAVWYHLDCVGESPGVANRQFVCPKCTGKKEKRARKGKAEANVPRVDKSLVPKRPTSTE
SGGSTDQVPTNLMVACDLEPIECESQIGKTSGIATANVEGEIETTGAIGGHSTESSMQRELRRLEEETQQREKQMEEERI
IREKKLEWEAKLQRKQLEQDRALRQKKLDQQREMYRIQLQEEADFRRQQEKLLEDFREQKRAVQQSTIPSDDTVGKPTIE
GAPIERETASSVFHPVPELPDTPKRIVKSTIPVVKERNETYEQHCSTQVIREEHSFESDDAGTDDEIESTVSRRSGPTKS
QIAARQVLSKKLPIFSGKVEEWPLFYSSYVNSTEACGFTEVENLVRLQECLKGPALESVRSRLLLPKAVPQVIATLRMLY
GRPEQLIHALLGKVRKTEPPRADRLESFIPFGMAVQELCDHLEAAELHDHLVNPVLIQELVDKLPAATKREWVHYKRNAL
HVTLRTFAEFSSSIVSEASEVTLTLDLRQTTKPDRSKVKDKGFIHAHTGEPSIASPPMSPCRICKTAAHRIRNCEEFRRL
NVSERVKLMERWKLCERCLNEHTGWCRFKITCNVGSCRQPHHPLVHRGSATTSQPCQGQLHMHLDGKLPVIFRIVPVTLC
SGDKTYSTFAYLDEGSDMTLVEESIVRELGVRGILQPLTLQWTGNVKRRESSSECLSLEVVGEAGNRLELKEVHTVNRLY
LPKQRVDFQQISNQYSHLHGLNVPNHTGEEPKILIGLNNAYLLAPLESRVGRANEPIAVRSHLGWSIYGPRETVIAAGFL
GMHKGYTNQQLHEIMRGYFLNEEPKSTVTSLPETAEDRRAREMLESTTTKVGNRYQTGLLWKAEEVNLPDSYSMAYRRLQ
GLERRLLKNPELREQVNQKIQEYQSKHYAHKATPQELALATPGRVWYLPLSVVTNPKKPGKIRLVFDAAAQVNGVSLNSM
LLVGPDLLAPLDAVVQKFRERPIAFGADIREMYHQFLITPEDKHVLRFLFRTSQQDKPDIYLMDVAIFGSACSPASAQYI
KNLNASHYSEHYPDASNAIIRKHYVDDYMDCANTTEEAIERAKQVRYIHSQAGLEIRNWVSNSTQFLEAMGEPIKPERVS
LSVGKEGACERVLGIIWRPYDDVITFSTQMRDDLMTYMTSDIRPTKRIILSCIMSLFDPLGLLAPFTVHGKGLLQDIWRS
GCDWDELVNEDCYVKWTRLKAVFPFINRIEIPRCYLRGAPPSAYDTLEAHVFMDASQDYYSCAVYFRITHEGAPKCALVS
AKTKVGPLKPLSIPRMELLAATLGVRLLDTVLANHDVKVTKRFLWTDSSTVLHWIAADPRKYKPFVAYRITEILQGSRLD
EWRYVRSKLNIADILTKWKTENFFDGEGPWFCGPNFLQHPEESWPTHNRPPANRVLEMRACHMYHTTMAFVPLINATRVS
KWNVLVRTMCCVIRFVANCRKRMQRMPIETLVIPKLASLVRRSICSIDVPLKQEEYEVAEQVLWKQAQLECYEDEVATLL
RNQKLPREEWQRIPKSSKLYKKNPFLDEYGVLRMEGRIGAAEFVPFDTKFPILLPREHIITYRIIEFYHQRYGHANKETV
YNEIRQRFSIPNLRAGLVLVMKNCQWCKVRKAQPLTPRMAPLPLERLTPFAKPFSYVGIDYFGPIDVSVGRRMEKRWIVL
FTCLNMRAIHLEVAYRLNAESCIMAIRRFVVRRGPPIAIFTDNGTNFKAASKELQNQIQRIDAECANVFTNARTRWSFNP
PSAPHMGGIWERMVRSVKEMMSALNERHRLNDEILLTVIAEAEEIVNSRPLVYQSQDEEAGEVITPNHFIRGSSSGLKDP
SIAPTNAAEALRNAYHRSQIISDELWKRWLIEYLPSLNARSKWLEESKPLVPGDLVFIVDDHGRNGWIRAKVEEVIHGKD
GRVRRAKVRTSNGVFLRPVCKLALIEVRASSKSCQEAISRQGLRVGE
>BEL-229_AA#LTR/Pao 27-5948  [Aedes aegypti]
MASGDTSLGGLKTGRDCGGCDQPNDADSQMVQCDACQVWYHLKCAGETPGVENRPFKCRTCQPPVRKQTRKQPRSQKSTS
ENRLKVPVVTTTDEHTETTPKKNPEVLPSKDNAGFPSKAISTKTVSSACRSRAVLQKQIEAEQRLAELKLAEAEKRLEED
RLMQERERALRDEKIKLQEDLLRKMQELEGTVDDEKRSGYSSSSGISKTRNWLAKQREQDIISEHIGNSSHRSPKMSDHI
SRQSGDDNNEDQMLPELADREAYGAIDQQGSGGMHRRMSSIRPLEERPLEGVSNVNRIATREIRSSTQSMTGGPTANQIA
ARQIWPKKLPIFSGEPEEWPIFYSSYDGANAACGFSDVENIIRLRECLRGPAREAVISKLMFPKSVPSIIETLRRLYGRP
ELMVKSLLAKVRRLEAPKPERLDTLINFGMTVQQLSDHLIAADLQSHLANPTLMEELVDKLPAAYKLEWVRFKRVFETPT
LKEFAGFMDLLVADASEVTVLSQSRTEKNRHEKEKHGHKGHVYAHNDDDVDKIPSPREPCPICGETNHRVRNCEKFQRMN
VEFRITATKKYKLCAVCLFNHESKCRSRIRCNIENCQERHHPLLHRPGRRSAVASRVIDAECNTHGPRTRAVLFKVVPVT
LHNEGRSFDTFAFVDEGSSRTLIDSSLARLLKLKGETVPLKLIWTSNVTRTERSSKLVDVMISARGQDQTFSLNGAHTVN
GLNLPKQTLLLDGLADRYDHLRDLPTISYVDAEPKILIGLRNLELFSPLETRVGQPGEPVAVRSVLGWAIYGPCGIDNQR
SDFVGLHDCNCKPDEDLNELIRQQFVLEEAVVCVAPLPESVDDKRARQLLEETTRRLGDRYETGLLWKSDEIRFPNNWNM
AMKRLKGLEVKLSRDPVLRTNVHQQIREYVDKQYAHIATEQELASADPNRVWYLPINVVTHPRKPGKKRLVWDAAAQVDG
MSLNSQLLKGPDLLNSLPSVISVFRERPIAFGGDVREMFHQVRIIPKDKHSQRFVFRFDPSDPPDIYIMDVATFGASCSP
CSVQHVMRKNALEHAADFPDAAAAIIERTYMDDYVDSTDTVEEAATRAKQVREIHAHAGFEMRNWVSNSEDVLRALGEIK
EQKPVPIGDVTQENWERVLGLTWDPQGDFFSFSTTFHGDLEPYVSGNRRPTKRIVARSIMSVFDPTGMLAPFSIHGKMLI
QDLWRSGTQWDQDIPDEEYAKWMRWTHLLPGIGRLKIPRYYFGTLSPNRFKSLQLHVFTDASEFAMGCAAYFRAADDQGV
HCALIMSKSKVAPLQHQSIPRLELQAAVMGARMLKCAMENHNLPISRSFLWTDSTTVLSWIRSDNRKYKQYVAHRIGQIL
SHTQLNDWRWVPTKENVADFLTKWGKHTEPVSSSSWFNGPAFLYETEEKWPQQRQVASNIQEELRPCYSLHHIVIPQDLI
KVENISKWSVLLRTMILVGRFINNCRLRINGQPIETIVATDNQLKHLKRSVPAMIVPFRRAEFEQAELNLWRLAQAESYP
DEVRVLLKNRDASPDALTSVERSSPLYKLSPFADEFGVVRVEGRTADAGYAPFDARFPIILSKDHPITFRLINHYHNQYG
HANKETIVNEVRQRFFVPSLRSVVDKVARACQRCKVRKCKPQYPRMAPLPEQRLTPYIRPFCYVGVDYLGPLEVAVGRRK
EKRYVVVFTCLVVRAVHLEIAYDLSTDSCVMAIRRFVRKRGSPEQIFSDNGTNFVGANRELTQQIKLINDNCANTFTDAK
TKWSFNPPAGPHMGGVWERMVRSVKESMRALDDGRKLNDEILLTVLAETEWFINSRPLTYMPQEAGNDEALTPNHFIFGN
SSGSHEPLRSSTDLGEALRSSYQRSQYLSDALWKRWIKEYFPTVNRRSKWFNDVRPIKVGDLVYVADGDRRTWIRGKVEE
VITGRDGRIRQAIVQTVNGNGKLKRPVVKLAVIEIGDCESGKFPERPHLDPRGG
>CER7_CE#LTR/Pao 297-6053 via tfasty with BEL-6_NV, 2 frameshifts and 1 stopcodon. [Caenorhabditis elegans]
MSLQYKLATTTKAVNALMTVKAYWAGKTKDLAGAQLTKDQLGEIIEGIDQVESKVATTERAMEALTEAADLLDNYVTETQ
KCTEKIDEIVEIIVAAQDIRDVLHATLKRAQQQSSVTMTRTTDQPVQIPIVTYNSGSLPDIKIPKFKGESWEFQNFWVLF
EELVHKTDMPDMVKFIRLLGALEGEPKTLATKYQITSENYAKAVEALKNKYTNSESTINSLNEKLLKEKSKNDSIQAQKE
LYENLVIIIDQLRQLGEHLEDRIFKDLLLKKFSEKIRRKVYEQKLKDQGTWTTDRLIKDIEKILTIEEDLQSLMKTSQNE
SQPNPAAKSKDKSAKTFDRQCLYCKSTKHALHKCDKFVTQTLIKDNRCLNCLSKGHTVGECKSTRKHCASCEGGKHHFSI
CNKRDRGEKEKEVKTKTTDSAKSEKPKGTPTRGQQNVACTRSPAGEVTPDRYETEKVSNDQEVISLPTISARAFNPEKRD
WTDLTIMLDTGADQSYIKANIAKDWKLPKVDEKTLRLQTFGSGKAQPEKIFERSKIELETDGQKISMIVLHSEYLTGKIx
KAQMTNEDLKFALTKQLKINQECFETRVEPDIIIGCDHIAEIWRGDFIQLPSGILLIKTVFGYTTMGKNTKWSKPLEMDS
TISVMNTVVKVQNDDIEFLQQQETIMHAPNEYTGAVVDEKLEMEKKTTQFFNNTIEKRENGYHVRLPFKEEVIDKLPSNF
AIAKKRLQSGLKANPQVKKLVNDVFEDQISKNILEEVDVSKDTEGMRIHYNPHSPVLTPQKTTTKCRVVIDGSAHFKNEP
SLNDAIYQGPTILPDSVDTRFRSGKTVLLADVEKAFLQVHLNESDRDVTRVLWVKNPDLPPTRENLRVLRFTRVLFGLNV
SPFLLGATILFHLDRMEDKKLANTIARNLYVDNLIIATDDDSEAMFKLYNKVKTVFNGLSMNIREFQSNDQSFTDLLDEC
DKTSESEVKVLGVKWSTKTDQITSSTTDIDILENSRRTVSSAIASIYDPMGLLVPLLLPLKLFQRKLWIEEEKYGWDTPL
KEKHEKEYKSITDNIRGFSKDFNRHIIDKSGENEIIAFADASQEAIAACIYVKNKYGVNLLFGKSNVKSLKEKWTIPKLE
VQALKVATDRALSTLTALQDGDIKVTKVILFSDSEITLAWLRSEPGKKEVGILIKNRIESIRKTNETMLQKGVQVFFGYV
NTLENPADLRTRGLPKEDFQNSIWWKGPEYAKSDSSTWETRQKMFKINRTEAEMANINICKAIESEKFEAVFDINRTNSL
PKMRRVAAYAFRAIKKMATKLPRPRQQKMEKAIPELTVAATGNPPITAAEHQWDEKRLIREHQANLESKDLRKWSKLNIQ
LVEGLARCKGRLFHMSPDIDISQPVFIMPQSQLAKLLIWEAHGKYHTNEQQTMEATREKAWIPCLRRQVKKIIGKCVKCQ
RYNRAPMKYPNMADMPSFRVRRSRPFENTGLDYFGPMTFRKEDGSTESCWGCVLSCATTRLTHIELVQQCSTKAFINAIR
RFVSERGIPDRIVSDNAPQFWDNKSSTKYAARASKENALDKDILEYLGNTSIEWSFITPYAPWQGGMYERMMRSIKQAIY
KSIGKNILTLDDLETVMKEVSGIINSRPLTYVTEGAGTTICPKDFINPEMRMTIPLQVTKDMMDEYIPPEEINLTKQETI
EALQSSVAIIEDIWKIWNKTYLSELRETHKLRMDNKREINDSPFVGQVVLICDPNLPRNNWKMGKITETKPSTDGILREA
HLLTATGRTIRRPINLITPLEIEEIQHETDAQDAENVMEDNMENIPEKIQEVVANGQSEINTEIDQPNQNRRYNLRKKKT
INYEEKDDDNNQAQTVSRSQTWDIGRTMPKLLFLSLFALLISPSMATAPIECTQLAFESTKNSIPLKLAVQITVLKENE
>Helitron1_hel#RC/Helitron ATHEL1p; multiple exons [Arabidopsis]
MSCRRVAAAAPGDVTTTAISDDPIHPFIVIGRAIHLPPFNFIRLATLLNLIRLATHLARCLRTILRSLYHKVTMLVCSFE
RSGLTSIGRKNLHQPKTASTIPFSDLTKPNLQASPQNLDASMTPATAYTVNTGQELSNPYSCISNQTQTPVMSTEYSHIR
NLQAEFEKASTSATNPRAEATINSDTSSDDENMANMMFDGAVYESDTDVDQNYSLSSTDDESADTTTIQTESESMANVST
HEVEDIVSQLSENDIELDTFSSQMDIFMIPTESTQTANVPESAPKKRGRPRLAVTKQMRMKQIRQQNKPGYLDHGDPTFK
CKYCGAMMWYDERIRKKETNKESGFTLCCGEGSVKLPFLKESPDLLKNLLSGNHPLSKHYRDNARTFNMVFAVTSLGGKV
DKSMPKGRGPAMFRLQGGNYHLIGSLKPTPGDYAKYSQLYIVDTENEVENRAIVIGKGKNAKPASGKPNLDKNLIEVIIK
MLNRCNPYVRRFRTARERIQTNDEEPFHMRIIADRQGVEGRTYSMPTTSEVAALIPGDFRHGMPDRDIVIGKKSNGHLKR
INQIHISYLALQYPLIFCYGEDGFRPGIEKCSKSKSKKKNKKCISMRQWFAFRIQEREVECQTLLRSKRLFQQCLCDAYT
TIESNRLNYIKFNQSKLRCENYTSVKEAAAAGATTMEEEGNQLLIPASFTGGPRYMVQSYYDAMAICKHYGFPDLFITFT
CNPKWPEITRYCDKRGLNPEDRPNIIARIFKIKLDSLMNDLTVKKMLGKTVASMYTVEFQKRGLPHAHILLFMHAKSKLP
TADDIDKLISAEIPDKEKEPDLYEVIKNSMIHGPCGSANVNSPCMVDGECSKLYPKKHQDITKIGSDGYPIYRRRKTDDY
VEKGGIKCDNRYVVPYNKKLSLRYNAHINVEWCNQNGSIKYLFKYINKGPDKVVFIVEPTQQTTAGDSETPQQEQGSAEK
KKNEIKDWFDCRYVSASEAVWRIFKYPIQHISTPVQKLSFHVEGKQPAYFDPKSNIEDVLERVANADSQFMAWLTLNRRN
AVGKNGKRARECLYAEIPAYFTWDGENKSFKKRTRGFSIGRIHYVSRKMEDEYFLRVLLNIVRGPTSYAEIKTYDGVVYK
TFKEACFARGILDDDQVFIDGLVEANLTLTETEIKNYTLQEIEKIMLSNGATLEDIDEFPKPTRDGIDNSNRLIVEELRY
NRESNLKEKHEEWKQMLTPEQRGVYNEITEAVFNNLGGVFFVYGFGGTGKTFIWKTLSAAIRCRDQIVLNVASSGIASLL
LEGGRTAHSRFGIPLNPDEFSVCKIKPKSDLANLVKEASLVIWDEAPMMSRFCFEALDKSFSDIIKNTDNKVFGGKVVVF
GGDFRQVLPVINGAGRAEIVMSSLNASYLWDHCKVLKLTKNMRLLANNLSETEAKEIQEFSDWLLAVGDGRINEPNDGVA
IIDIPEDLLITNADKPIESITNEIYGDPKILHEITDPKFFQGRAILAPKNEDVNTINEYLLEQLHAEERIYLSADSIDPT
DSDSLNNPVITPDFLNSIKLPGLPNHSLRLKVGAPVMLLRNLDPKGGLCNGTRLQITQLCTQIVEAKVITGDRIGHIVLI
PTVNLTPTDTKLPFKMRRRQFPLSVAFAMTINKSQGQSLEHVGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDGKL
QKQTTNVVFKEVFQNID
>HeliNoto#RC/Helitron 113-8907 [Chionodraco hamatus]
MVDVDDNGWRTGKGYACTCSDQVQLAVVAGTDVRYASITDDRISVACSIAAAIKHLIAPVCTWSSTDIDAIRVAGSKLNS
FVLGEAHKINVKPKNLCRLVEQTSVFGRKWNVNMGLPVYGEFNLSEGDEVLSEKLLEHLSRDGMCLFSINSASCAIIKHN
DCIVVVDCGTRGAAGLASSFGTSVAVFNTCPNDLMLYIRNLNNSLNAQKFSITSLSVKAAEVNLETARVTSDEAGDMGCI
RGTFSQGDQRFKYAGLQCMAVSLVGVAKHTVHSAFTWQTDNLDKVVVLGDNLYTSLRDQQGISGGYKLLSVPDLPKEAII
DGQTFLFQYSDFVSGDVDVVEGDLIDDGVHTTLKCGLERMCTKYDTCFLTMNGGTCAIIGQGGHYAVVDSHARSASGMLD
GEGRSVVLYFRGLEHAFEYIWTFAAFLKKSQKQFEIAGVRVTHIGPIESSNLSLGPRVTPKTIGTDLGCSSAIQSTLGCT
NIPMGAKRKIRKGSSACKKVKKSDVTAVDSDVAFVKEVRRGRLQFNPLTNQLAQALCDKLHVQSEKVDVCLHKLVLLGAP
CLNDKIEGDGNCFFRAVSQAVCGTQRHHTIIRRAVVHQMQSNAVPYERTLTSSMSEYLSTSKMREVGSWATQLEIQAAAD
GLGVNIFTYCDPRWLKYSCENGQASSQGVYLENRNGNHYETVVCVKQPNLHSCYGYCKVDTSCPRLYNVRQTTRGKRRVA
EQTRGTSSAGDTDCVEKSDVSKITLEFNPLCNEVAKTLCAKFNIDFTKHDVQGPTVTGSLGVVCKTEKIKEDANSFFGAV
AHVLSGFSESHRKIRMTVVKHMMNHAENTKVVGGSASISDYIKKSRMKYVGHCATDVEIQGTANALGVDIFICRGGKWLK
YTCNCAMLSKEKIYLKHCDKNHFEPVVCIMPSDEQTCFKLCKVGGLLETRYMRSSIDICTGKGGVKDNAESVSSFRRRGS
TYLKKRCSSTKKLHYKDNTGFQEKIRGRSMKNYSDADYQERVRVRRRKKYYDDDDYKHRAIGHTQVRYHEDPFHNQMRKD
SSKRIYRLKVLHREKVIAFNKRKYRQNTLHKKKVESMTSKRYHGHPDYKKQIAASNKLKRQQMQQNRESFDNVMKQFLAK
VKNGPVLACSCCERLLFESQALQCKKEKYKDQELANKCIGEKYLHTCADDCKVPCVWIEIGRGQVWICSSCDSKLKRGVM
PPECVRNNLALDPIPPELACLNNLEQHLISENIAFMKIVGLPKGGQNGVHGPVTCVPANIVQTTNLLPHSNMEGSILRIK
LKRKLTHTGDYKFQFVDPMRIKRSLRYLGRRNKHYRDIKFNRSWYNEFRREEEENKQTHTKETSSEAAEEQPCLLQDMDL
MAVHTDLEIADQFSDRELNMAPAEGNSPAKESSCIPVRVPEDEQLDDALLYNFWREQGDGSVDNSTLMDLPTNETSDANA
EDELLHDRQQHCMFQDTCLMPVDIGQEVLDQYFDSTLHVAPAEGNSPVRLLTDISNEAKCFPVLFPLGINTYHDPRPRKI
TLARYLNMRVLNADVRFAQHIEYIFYAQYLSEVQQVLSSVSIALRKGKAGFPSKPIEDNLLNQETIRKLLQFDDGFRFLS
PIRGTPAFWQRAQNDLLACVRQFGVPTWFCSFSSADLRWANLLDAILKQEGRTQTAEDLDWADRCELLRRNPVTAARMFD
YRWNCFLNEVLRSPSNPIGKIVDYFYRVEFQQRGSPHVHCLFWIENAPKIDKNTDEEVIQFIDTYVTCEIPSQDEPLKDI
VTSVQQHSKRHSKTCRKKNTVCRFNFPRPATASTFICRSSEDECLAECVCNLTPCECVKIESMAEKKEKKEFAVKILNSV
KKALSDENVIFGSLEQLFESVGINQAIFEAAYKLVGRKTHVVLRRQIGEVWINQYNKLLLKCWNANMDIQYVVNAYACVV
YIISYISKAEKEMGILLGNAHKEASQQGNLDAKDAFKKLGSVYLHNRDVCAQEAVYRLTNMPLKTCSRLVQFVPTGKNTV
KISRPLQVLKQMADSNSLTTDNMWMTGFIERYKNRPNDAVFNNMCLATFASEYRVLSQSESSKNAIELQNQFGFILKRTR
TKPAVVRYAKFSKTKSPELFFYSNFQLFLPYRIDEQLKPHNWETCEDFYMSGRVMFADGSRQLVKSVVDANRALFELDSD
ELQRIQESLDGNVDFEDAWCDLCPEQELENLQCLEEREKFETVDGEQIDAIPDLAVTNRQIGHLEKTKNILSRSEGLKLV
RSLNETQMSIFYQIRQWCLDKISGKNPDPFHVFITGGAGTGKSHLIKALQYETTRLLSPLCDHPDSVCVLLTAPTGIAAY
NLDAATIHNTFSIGVNSKLPYTPLGEEKINSLRAKYRNVQIVIVDEISMVDHKLMAYIHGRLRQIKQCIDYSPFGKVSVI
VVGDFSQLPPVKGNALYLEKVGFNLWHNLFSIVELKTIVRQKDVVFAELLNRLRTRSKETALSASDIDLLKSCETGEESS
ALHIFPTNAQVNVHNLVQLLKTCPEHVEIEAQDTGHNRKTGKLELKHGHHTKIYQTCLAERLVLGENARVMLTKNIDVTD
GLVNGVRGTVRHIVISPGERFPQTVYVHFDDDRVGAQRRKESANASSQLVNCTPIFPEEDRVTVKGGLRRQFPLKLAWAC
TVHKVQGITVDRAVVCLNKIFAAGQAYVALSRVTNLSGLIIQILKLIAIYCKTNVTQAIQCMPQFLREDRIHPKLHTDTF
TVFLTNVQSLTRHVKDLTLCTQHLQPNCIAVTETWLPAVSSFDDINISGYTFSSCSRSASYSSKNPALVALKDQQRGGVG
IYSANSIEFSILQVPDVNLECIVYNCLSHSILIAVIYRPPSYPMSLFKEHLGKLLDLLNLLGDTIAVMGDFNDDILKTSS
ICKFVTGKGYVQQVTQPTTEKGTLIDHVYVKTTRYDVESTVLPTHFSDHEG
>Helitron1MT_hel#RC/Helitron 4543-10189 (7 introns, predicted by genscan) [Medicago truncatula]
MVDEGKDDAHVKDAKARRLRRKEILLSRFPKRRKSSLSASTTPLADITNTNFTSQNTQSSTNRNHKLIPPFRLIRDNQKP
SSSDITSARPFSSFNPNPSVSNISALYKHGTQTSLPQLHSPVPNSKNASRGNPFYRPKHPFPINSPNYHRTNSTLQQRPF
SMDSPSILRSHDLMSKSPPKTTTPNFTQPTSSNFQIRNPRKASTSHMTGINLLNRFEMIDTNIASSSTAAENVDINDESD
GSANSEDFEAYNAVHQSESESSDEDDLTGSQFRDSAQYHTQECQRCGACMWYQERKNKSRESANPKFGLCCGDGTIQLPY
LRKPPALLSHIRRGRGPPTIRIQGQACHRIGSMIPMPGRPPKFAQLYIYDTENELQHRLQGLSNANLLDIQMIAALQKML
DENNVHAKSFRMARDRLSEGDVQNLKLKLISERTTDGRIYNQPTVSEVAALILGDVDYAPRRDIIMETQCGELQRIDEFH
PAYLAYQYPLLFPYGEDGYRDDVMHRDKKTGKKPKRVHLTIREWLAFRLQSRLFEPMTILCARKLFLQFLVDCFTMMEAD
RLSWLRKNQSKLRVGKYKSLSENQNKDQPESSKQGKRVVLPSSYTGGRRYMDQLYFDAMAISSAVGFPDLFITFTCNPNW
PEIQRYVTSKGLKPHDRPDIIARVFKIKFDQLLKDLTKKHLLGKVIAYMYTIEFQKRGLPHAHLLIFLHPSSKYPTPEDI
DKIISAEIPSPDNNPQLYTLVGNHMMHGPCGLANKKSPCMNNKDRCTKFYPKKFQESSIVDHEGYPVYRRRDNGSHILKN
GIALDNRSVVPYNPHLLMKYEAHINMEWCNQSSSIKYLFKYINKGYDRITAAVVSDGSTSRSPDNSQDEIKKYLDCRYVS
PSEACWRIFKYPIHGRKPSVERLFFHLQGEHSVYFNDYEHIDDVMLRPSVTESMFTSWLQCNAKYAEAKTLTYAKFVSKF
VYVKAKRTWTPRKRGFAIGRLMWVPPTTGELFYLRLMLTKVQGPTSYEDIRTVNNVCYDTYREACFASGFLMDDKEYIAA
IKEASVWGSGLFLRLFFVTLLIASSMHRPKQVWEKTWQWLSDGILYEQRRLANNPDLASNYFYHVQGLMLTEEQIKNLTL
TEIERHMERNRRSLKDYKGFPYPEGYIVEQLGNRLIYDELNYNVNELDAEFQQLFATLTDEQRNIYHKIMSSVSKEKGGV
YFLHGYGGTGKTFMWRTLAARIRSRGKIVLTVATSGIASLLLPGGRTAHSKFKIPVPAFENSSCNIDGTSELAQLLKMTK
LIIWDEAPMAHRFCFEALDRTLRDIMSSDKIFGGKVVVFGGDCRQILPVIPRANRSDIINATINSSYIWDSCEVLTLTKN
MRLQQNAMSSDNQELKNFSDWLLKVGEGKLSEPNDGIVEIDIPAEFLIHDFDNPIQAIFQSTYPDFLNYYNDPQYLQSRA
ILASTIECVEEINDYILSLIPGEEQEYLSSDEIDRSEINDECQSFDILTPEFLNSLRCSGLPGHKLKLKVGTPIMLMRNI
DQSMGLCNGTRLIITRMANHVLEAKIMSVKCIVRSYHKNYAEVDQRFVNKNHHCLRGTWKLLNEEGGFHELKFNKNSYIP
TITDGWAEIKEYHEIPDNAEVVFSFYDIDLFAICMLREIDDPKTLPKFHSRSLLPKETFFFDQGIICELDPLFVAEYFDE
>Helitron3_rpa1#RC/Helitron ATRPA3H1p multiple exons [Arabidopsis]
MVASFAFLRDVRSYKTSWRVQVKVLHSWRQYTNMTGETLELVLADSQGVKIHASVKRDLVSKYVNNLPLNEWRFIETFAL
NHASGQFRQDVIGQVVNIVMRECPLLYGEHLLREFLVHVNLLMVKCLPADGLSLTFRESVPKFQMITVKQDYDCSQYERK
SIRDLLHSMEIGKVRVVSTIYALDLDWSWYYFSCRNCNKKVTHIHAGVNTTSSKSSKPRFWCDVCKNAVTNVQAKYMLYV
KVMDDSGETKFLLFDTICADMVGESCTSMLGGSFNEIEDPNDVPDGLRNFGWEDFSISVTRLLSTDGLCGEAVLEDSDHS
VNPASIVSGDQCIMLTSSQKTSNSVTSSSKRVYATKLSDSEQSSSSKKLCVQPLDLEKSEPDINDEVAIKEVKTAEITDI
VEGA
>Helitron2_CE#RC/Helitron from RepBase [Caenorhabditis elegans]
MNEFSQKTDFPSTSDSQEPVSKRTRSRFKSDSSGAERKRKQRGKESSEEREARHQYDQDRKRKKKASESKDELKVLLLKD
RERKARERREAKGISDGPNYLGPMSKTCDHCKAVFFESKNFQSNIRQFNSAFSMASMGAHLDIPKGHGPYCYRIHGQVYH
LAGPLHPEPGGRPSYGQIYILDTAQAIEERLGNPANSKCDPQLMAELTKLISTRNPYAKAYKMMAEVEEKENTDALKEGR
VAEEVRLIFDISTTKDRRCYNVPVSNEVAVVFVGEDQDIPASRSLAIHPRGGGLTAIRDIDKISVKYLFKYVYKGHDRAA
LNIIRSRLKEGIVDEIKAHLDARYVCAPEAIHHLFGFKIERKSDTDIRTVIDDDGVPVVYPTFVEAAKARGLLKDDSEYL
KSLKEWIGCSVPAALRSLFSSILLFNEVHEPQVLWDTVKRDLSEDYRHAGARDDEAEALAYFDISSRLHRGGKAFNDYVP
EPSMHPTDIYLNTSDPSQCAAEGVRLFQTLNSDQKYVFERIVGALHDPTLPRLFFLDGPGGSGKTYLYIALYNMIIGENK
MAACTAWTGIAAHLLPGGRTMVSLLKLNIHDRCESSLHRRQLKDARELANTDVFICDEASMIPKTALNTFDSLLRDITQV
DQPFGGKIVILGGDFRQILPIVEKGSRADQVDACIKSSPLWNQFETLRLHSNMRVTTNDTEWMNFLLGVGDGSLNDSESK
VQIPFSLCDGNIVEKVFGDVIDPSTSDPCENVILTPKNVDVTLLNEDVHSRGIGEERIYLSRDEIVTDDPADHMHYPTEF
LNKMTPSTLPPHVLKLKKGSVVMLLRNLDVSGGLCNGSRFVVESLGRRTIGCRFACGERKGKFVIIPRIECYHDKNLSFK
LKRTQFPVRAPDGRITNIVFTEIL
>TATE_orf2#LTR/Tate 1667-4615 [Leishmania genus] Contains a phage integrase  (AA 837-1004)
VFPRRRGTGRVKKLTPDGATADVSQEATAHKRQTTFGIARSFAKEMWGGDMREGKTSNIELDVIYKAYLPKKRIVPSDTM
VHLDWKRAQQLKAKVHRHGVVYFPIFIMKHWIAGLLEKGTRDSAEIQLSILDSAPSPIVEEKLRKHFKMVWPALRLVNEF
SPRQERYSDDCGLYMSAVFFGAHLDIQIDHSHDMAKCMRRLLYAASKHHPPREYFLEKMRKILTNHPVSRKDFFYNEIEH
KPWLKKTTVNREDTFHLGGGERRATKSTNPKRDSRRANQPKARAPXPPPRQKKKEETVRTKMDRAERTKRTPQTPVPASK
APSRKRPERSAMDAPLPRRKAARKSDRRTPASSSGRSATGRNGNKTRSLNSSEFPSDDEDLPVIDLPWRKKNSVTRTPEH
APNDATVSSEGIIPTNVSPHVQHGKCISEWTEITLAEANKHARKVYEAVLDHLWAATALARVGDGVAHGLTDTAVGQQRV
RHKLTPLQPYSVQEMLKLLRKKIHMVDASPTDPNGVILREEYRSEEVTLDSSIDELYLVRGPSLPTLYDVIKGYRFLLGA
CLREAPADVNGVRYPSHYVLTKDASEATVGVYVPATWTHYQSSKRQRAPRHASRYIPLPRSAASEAHQDPSDGQRPRLVK
RKRWPGDGAGRDPLQEDEEDGATYRTPGNQKGDGYADVDANISAEAMRALESLRSNPLNMQGRPLSKNEEAEVCPRNWFL
FAAKPPHISQLAWNLVRPDTRAHHLRWLTRIKSMNSEQMLMRFPAACIDLILSTARARKWKWATTAKAFAAVAGALRDLP
LYSTQTRGIRLQDDPEWRSAFGTVQRYMKESVPDAPPFVSRQQVERISKRLRLGHPRAALFLAMMWGFAARACDISTLRA
KDVTLFPGTSTDTYVKVTLTIRKGKGAKTRGPYPIPSMLTRDLAATLQEMLVEKRPSEELFSPHVEELRALIAQEVRTEM
RGAQLPSIRKGALRCMAEAGVPLKDLMMISGHAKQATLLRYLGYGQQPTVEAETARDNAGRALFQTL
>DIVER#LTR/Pao 332-5575 [Drosophila fruit fly genus]
MSKFDQLVRVQTDRIESLKRLFSNVKKDSSARKTEIYFEKRLNQIDEFNKEFHQAHHTLICMADYEESVYKQQNTISQFE
DLGMEVYCFVAEEKKRIYPGTVTHNESANSTITTHVEEVRIPLPKLPVPKFSGNCADWPSFHDAFLRLIHNNERLDKIQR
FHFLKEALPVGLDNDIRQIALTEANYEVAWTTLLQRYNNPRIVFASHMNMLYNLPNLSKEKSADIRSMVSTVNVCIAACN
TVKAPLQGGDFWLTHYLTTKLPKDTHTAWEHHLGSKIDVPSYKDLQQFLNDRLVTLDAIESRNACSGMKQSNETSDGTKR
VRVHSAHTRSGASASACYHCGNLHILRRCPQFLSMDCYQRKEVASKAKLCLNCLGKSHTQASCPSNKNCLHCGQRHHTML
HFPATQPTLIPSSTSCQGSAASSDAKPTLQCMSTTTSSKTHRKVLLATARVVLSNTQTGCQATVNALLDQGSEATIISEH
AVQSLQLSRSTTRTSITGVGQDSGRRCKFIVSCSVQTATNPNFSLKVDDAYVLNTLTSHMPSQSFPAGNWSHIHGLMLAD
PYYYRSKRIDIIFGADLMAQLLLPGTKIGLPNEPIAQNTQLGWVLLGNVGNTHITRHIRCNHAIINSEELLKVFCEVESV
PERPKLSKEDQWCESFFKQTHQRQPDGSYQVRLPFKRNFDPSMTLGKSHQIALNRYLQLERRLQRDPDKWIRYCKGIEEY
FQLGQITLAETSENSTITTDSYGRHVASCVLPHHAVFKEESLTTKQRIVFDASARTSNGRSLNDVLCVGPTLQNDLPAVL
LNWRQYQFVFTADIQRMYRCINVHPDDTHYQRILWRPADGVIKQHCLTTVTFGTASAPYTAIRVIHQIAEDTQTKYPMAS
NVLKNEIYVDDILSGDHSQEAAIRKSLQTMLALKSSGMELRKWASNDQDLMATIPLEHRCKQTSLSWDNADTIKTLGMYW
LPKQDCFTYKLLANTPAGITKREILSTIARLFDPLGLIAPVVISAKIILKEITLAKQYREDGSSTSLDWDEPVPNTIAVK
WQQFRQQLMKVKTIKIPRSVKFTPLFSSEIQLHTFCDGSSSAYAAAVYARTQQSDGTFYTTLIVAKSKISPTKPLTIPRT
ELCGAVLATKLLKWVLENNRWTNAHISTFYCTDATIVLHWIKGDITRWKTFVANRVSYILDHTSAAQWHHIDTSENPADC
ATRGLPPSQIPDIWWHGPSWLCKPHNIWPNTQSQLLNPEERDLEAKSIKIRAFTTLSDTKDSIIDRFSSYTKLLRVTAYM
LRFCHNAHARAQRSHGSLSPDELDEALCCIARLAQSDTFHADIQALKRNKPLPPRSTLSNLTPFLDNNILRIRGRLKHSN
LSFSRKHPIILPHCHLFTDLVIQHSHQLTLHGGAQLTLAHIRYKFWIPRGRQAVRRIIRKCVTCFKVAPVVAKQLMGDLP
LHRVNPPTRPFITTGVDYTGAIELQAARVRGSTTYKGYVAIFICLATKAVHLEAVTGLSTEHFLQAFTRFTGRRGQVQHM
YSDNGTNFVGASTSLNQPITCKAALNESTCQHGTRWHFTPPYSPNFGGIWEANVKAMKHHLKRIVGSHKQTYEELTTVLI
RIEACLNSRPLCPLTADPDDLEVLTPAHFLIGDALLAPPQGRPNNKPLRELFLAQQHMTRQFWSQWSRDWLSHLQTRPKW
CQIKDNLSINDLVIIKDDNLPPAKWTIGRVVELHPGSDSLVRVVTLKTKSGIQKRSITKLCPLPIST
>CER8_CE_p1#LTR/Pao 6337-7395 Similar to CER10_CE_p1 only [Caenorhabditis elegans] 
MEDNPDYRPHEVERYPVDLPRQHPRPGILDIRCEFTSIKEFFGEEPPFNERTVLRFAEYVRGYYPDHQPTHVMDRGGLAL
YIWIDRMPTPATHLQQTFLRLPFLEEVENLSRFVLRHARAQNEHLEGERTNRCSVCGSHLLGMPLADHSYIRCPLDALEG
ERRLEFLAINHAAFCSKCNSRFAKHTGCTGPVCHSCDQRGHTAATRLCDSRLGRLTPESQQELLTVVTQHRRNYLLHIRN
LTNDINKPLRYRSYTDQAYIFLERRVEDRWLIDGWGFYHDDAGEFPQPAMQRYSNHPHRSVRYKGLVPPEYHSQAVNPIP
TFPPHEVEYLQAVHEVIIEFHRSGEVIGKSVD
>NINJA#LTR/Pao 352-5920 1 frameshift [Drosophila fruit fly genus]
MQHSPRKSARLNGGEATPITTASQQPASSGAGTRTRVNITAASIPCPATTVTTVASQPRSTAVTAASSVPEVNQPLVLEL
MERIAALERELEKARSLESVSTANCAPIAVGPSAVGANSGASGRPPFWSGQPIPTSNGEALHNGVGSVPYNGDGASGAAC
TLPPSSSGPPLLTTSNYFVEPLCATGTAQPAHGLVLPGVSIHNAATASPLVGSYAATTPSGIQGAYGPRKLPDLPIFGGQ
PEEWPIFSCAFVETTRAYNCTDLENNQRLLKALKDEAREAVKALLIHPGNVSAVMEQLRFRFGRPEQLIRSQLNNVREVQ
PISEHNLAKIIPFATRVSNLAAFLQSAKAEQHLGNPTLMEELVAKLPTSKRVDWARHAATIAPFPTVVHFSAWLQEYANV
VCTVLDVEGKEPRRRLLHASVDHNECDQQDDRHGGCSICGGQHGILNCRKFIAASPQERWSNVKRHRLCFNCLRSGHTAR
SCYTQGECQINGCRREHHRLLHGADEERRPLQRGGFRRHEGNQQPTVSRRSPARRPSLRDGHKDQERNRQPAVPSNSLER
GAPREAGAPMQRNLSCVDAEGGRLLFRILPVTLYGAGRKVDTYALLDEGSSVTMIDDELRRDLGVQGERRQLNIKWFGGK
ATREPTNVVSLKISGVGKPTRHVLRNVYAVSSLSLPMQTLSRRDVQGVHRDARLPMKPYSNVVPKLLIGLDHGHLGLPLR
TRRFAREGPYAAVTELGWVVFGPVSGQPTTPSPRSSLLAVSVDDAMEKMVEDYFDMENFGVKTAPPVAASDDVRAQRILE
DTTVKVGRRYQTGLLWKDDHVVLPPSYEMAYRRLVNVEKKMKRNKPLAQEYDRIIKDYVSKGYARRLQPEEVAVRSDRLW
YLPHFSVENPNKPGKVRLVFDAAAKVGGTSLNSELDKGPQHYKPLPAVLFHFREGAVGVCGDIKEMFHQVLIRPEDRCSQ
RFLWRDGDDERDPDVYEMNVMTFGAACSPSAAHYVKTMNALKYRDSDPRAVKAITDYHYVDDYVDSFATESEAISVSTRV
KEIHKDAGFELCQFSSSSPTVETALGPGRVKSVGWGEAEEKILGMRWQVATDDFRFNVEYHRVPSSVLSGDRVPTKREYL
SLVMSTFDPLGFLCCLMVTAKLLLREIWRQKIQWDEPLPEELSKAFAIWRKEMDAVGQFRCPRHYFGRGAVRAVELHVFV
DASQAAFAAVAYWRVTYEDDDVQVSFVSAKTKCAPMRTMTIPRLELQAAVLGTRLMNTVKQEHSVVITDLLLWTDSKTVL
RWIGSTHRRYKQFVGNRVAEILESSKVSQWRWVPTADNAADDATRSQKGVDLSQESRWLRGPAFLRQPAASWPGPEEGTE
RVPDAPDEEEMPSEFALVAADDFVIPFQRFSSFSRLVRTTAWVLRFARWCRKQRNELEEYGLTAAECKAAENLLVRQAQL
ESFPDEMRSAETGQDVGGSSDIRGLVPYLDEDGILRAYGRIDAALCMPYSARRPVLLSHRHSLTELIVRDFHDRMKHQNV
DATIAEIRTKFWVTKMRRVMRKSHLIVQRVQVAATATDAADNGTPSGRQTGCGWMAIQIHRTGLLWATAGDCVPSQGEAL
GRLVYVFDDKGDSPGVAHDLSTDSCIIAIRNFVCRRGPVYRLRNDNGKNFVGADREARRFGDVFEMEKLQSELSSRSIEW
VFNCPANPSEGGVWERMVQCVKRVLRHTLKEVAPRDHVLESFLIEAENIVNSRPLTHLPVDADQEAPLTPNDLLKGVANL
PDTPGLDAECPRRVLRESSGGLLACSETVSGGGGSWSTCLRLCAARSGAAERSPSTRVIWSSSAILPWPDESGARASWRR
STAELMESSDALRCA
>TAS#LTR/Pao 176-7126 via tfasty with BEL-6_NV, 6 frameshifts and 3 stopcodons. [Ascaris lumbricoides]
MVGRIPPTEDDVDITQESSFQITAFIKRRDCLHHCLKNVMRLISQIENKHEKWLELLDTLSDPRAAEAENKAYEDYAMQP
DSFLYLCEQAKTIADQLNARISNITDVLKTLQSSVSSPTPLIAQVSSNLQAISAPSPPEPIGSHVALPQIQLRKFSGNPK
EWTGFWETFNSAVGHLPKIQCLNYLLSLLEGPAATVAQGYAMSESSFDLVVTALKSNYGNPAVIIASLHTELQNLPSDNG
SQLVATVQALERILRQLEQAGENLDSPLLVFIIEQKLSQRIKRRISEYKALDPEWNVEKLRAKLREFMTAELIYAQSHGR
AQQVKAVSTPRQPQIKTSSLLAQQKQQKKPSKPCAFFGESHWNRDCPSYSTTEKRIQRVNKLQLCTKCLKRGHSLQDCKA
MQHCYYCHNRNHNSLLCMERCKSQEKGKNGTDQPLSPEEVIAANMASGNKVLLFCKEVVVSNPQKANCRTKALMFFDSGS
QKSYITTRLANRLRLNTTPQKLSISTFGDCAPQIIQSNRTVISVQLQNGTRKAVRVSTIKRITSNLEVIGDNIEAHFGDL
KPSELPRKIRSPDILIGHDYFSDFIPLTGIKRLGNGYELIPTKVGYILSSKQAEKKEAAPAVVCIEKKNASDAREEMEFA
NQHSSEQVEQISNYWNVELLGIRDSPTEHEDQQAMDMFKETVKRIDGRYSVSLPFRDSVPQIPQNFGLAYGRLLSTWKRL
QNDRELLEKYDAIFSQQKDCGVIEEVPQEELKPTFNIVHYLPHQAVINPHKTTTKIxVVFDGSSKSRGTKSINEAIMRGP
VLLPNLGGLLLRFRSMPIAIIGDLEKAFLQVALNKPDRDAARFLWLSDINSSPSHSNLxVFRFARVPFGLNASPFLPTAT
IKTHLDSYGDVALAEEIWKNIYVDNVLISARTTKEAFNKFESIKKLFEDARMNIREFLSNDATFNKTIPERDRHEATNAK
LLGLRWNTTADYIQWKVSPPKQPMMTKRQLLSYIAAQYDPTGHIPPLFTPLKVILQDLLRKNQKWDERLPENITKQIDSI
CGEWNDRTIEVPRFVIKRQAALQLHCFTDASKTAYASAIYIRTEMNSEIECHLLICKTRLEPLKGSTIPHLELMGALIGT
RLLEYTSQQLQLESADKYIWTDSQCTLQRIRSSDVHQKDRFVENRLKEIRKTDARFENGSCPSDSNPADIRTRGSDLDDL
INNKIWWHGPHWLLYSSEQWPQLEITLLGQKTKTVSSGPEDHLETEATTANTHMACEIYDRSSTIINAMRFSQWSRLLRT
TAWVLRAVACFKGNCPEKGSLKGNEISRAEELLIKQAQREDICLQEREKWNAHLDKDGLWKCEGRMKYASSPLLIYLPAD
NRITQLLILHIHEELLHAGISSILAKMREAYWIPRGRQAIKRALNNCFHCRRWKSKPFQMPPMPPYPPERVSKHPPFENT
GVDYIGPFTIRSMKRITQNAWICLFTCFSTRAVHLEVASDLSGPGFIQCLRRFVSRRGLPKRMLSDNGTQFVWARSVLTS
VSKVHQTDNAILDYCAAHNIQWSFITPLVPWQGGIYERMVGPVKGSMKKTIGWKRLTQEELQTLTTDIEAVVNCRPIIPL
TSENTTVLRPVDFLLPHGNSSPGVFRSLENDAREPTYRDPSDIHQKLLKYWEETRAKLDNFWTIWREEYLTMxNNDMKQL
TNSQSVLKRDRLQVNEIVLLNESPCPRGTWPLGVIEPLHPEPSKVRTTTIRLSNGKKVQRTVNSLFPLEIRAKADAITAT
AATVISTTVIRETLNKAVTRRKHTLPFYLLPCFLISGLLTLVVGSAAASGTQGIHLPIPETQNCTVERFSHLTTTRVSVF
ERKLKRVEAISCFQITHKNCTRAFLRFSMYETLEEPIISAVTAQACEEIRNTKRFSGLQLERIGAKRWKSSQPSTASYAI
FGERCTATVNYELDEGYVLIGDDVHIDSCLANVTACKASTGKCMADGRIVLWDKKMLVEQCAWHRVGTYLAQVTEKRIIV
DKLQASFVPLEAFDESWTQAEQCQLQSFAPMQNGILITFDDWKQQDVTDWYRKARVHAPNISSVELGTRFDRENAKFQYA
SDRWLQQFKLHLNKYAETQCQTRNNFLILIRSISRSDPSMAAKLLLHRGDVSAIREGDKLIVFPHNGIIEKSNEGTHGGE
IENELVFWSATLQDTSIQQAQAQIDLLKSRSARWGLRAKPSTFSDSRTALSDFGNEIETLAEEANNNIQHIFEAFKYWEA
LLIVIAIIAVSIIITFATIKCMAVVKKLRKKGEISNPTVIFIKENAAETTVIESLQQHIDRMRFESVIIGRKDRRLG
>Pao#LTR/Pao 91-3531 gi|479443|pir||S33901 reverse transcriptase - silkworm transposon Pao [Bombyx mori]
MPITRSTGRGRIETEQSPPSETTATTQSMWTETTANTVMSLVAPTTESSCATANTEATTKLAEKPGNSKTEAVKQYIAKQ
NDVPTKQRAGTVKSDRSRNRKEQKIAKAREELARLQVELAAARLATLEAGSDDENSESEYSKSELDERVGTWLETQPTKT
ENHDRHKETPAGACDKQDFSDLTAAITLAVKAAREPRYTELPFFNGNHQDWLSFRAAYHETMNSFTKTENINRLRRNLKG
RAKEAVDGLLITNADPSDVIRSLEARFGRPETIAITELDTLRALPRLTETPRDICIFSSKVTNAVATLRALNCTHYLYNP
ETTKTMLEKLTPTLRYRYYDFTAVQPKEDPDLIKFEKFMKREAELCSPYAQPEQAGHYSQPAQHNRRTQNVHIVSEKPSR
AKCPVCSNTEHTTTDCYIFKKADSNTRWDIAKNKHLCFRCLQYKNKTHNCKPKTCGINDCKYTHNKMLHFDRKIEKTDNS
DKETTENINSAWTGKQKQSYLKIIPVQVQGPIGTVDTYALLDDGSTVTLIDEIICKKTGTTGPIDPLHIQAINNIKSTET
RSRRVNLTLRGLNSRKEIIQARTVNDLQVTAQKIPKEQIDEYSHLQDISDIITYENAKPGILIGQDNWHMLLASKVRRGN
RNQPIASLTPLGWVLHGGRTRTLSHHINYINHASETQEDDKIENLVKQYFAMDALCITPRRPKTDPEEQALRILNSNTVH
TTDGRYETALLWKTDNVSLPDNYNNSLKRLINIENKLDHNPELKQKYTEQMEALVAKGYAEPAPKTKTENRTWYLPHFAV
VNPPKPEKLRVVHDAAARTRGVALNDMLLKGPNLLQSLPGVIMRFRQHNITATADIKEMFIQVKLRPEDKDALRYLWRKD
QRDNKPPEENRMTSLIFGASSSPSTAIYVKNLNAQKHEATHPEAAATIQNRHYVDDYLDIFKGLKDAVLVTTDFRRKHER
KPTSKTFWIDSEIVLRWTRTESRSYKPYVAQRLTAIEDSSTINERRWLPTKHNVADDVTRHVPMSYQNEHRWFRWTEFLR
QRQNSWPTESASETTEPMGEVNIAAAVPAGASWPRRRHEKWKCQPRNTRMRGKSDSDISRSRQRGAHRRHQNQGWSSTET
STKTTDPAHRRRPSCTEKNATDSHGGSNVQDEIGFFIV
>Q9R3J8_DEIRA/92-259 transposon family T11 Pfam:PF01609
VREDALKEGVPTVAIVDSRTLQSTPESGGRAGYDGGKRRKGSKIHAAVDTMGNVMTLLVTPGNEQDREQVYDLCREVQQV
TGDHIDVVIADQGYTGEQPQIDASLNDVELVVVKRPTGATGFVLLPLRWVVERTFAWTARFRRLSRDLERLQSSLLGFHW
LAVSVTLL
>Ginger1-9_HM#DNA/Ginger 196-2951 via genewise with Ginger1-5_HM#DNA/Ginger, 2 introns (510:888, 1166:1667) [Hydra magnipapillata]
IVRGIYPQSIDKINKDGLRRKSKRYLVKDGLLFYYDKKRNMDLLxVLTSQKTMILEGCHSAILGGGHFGRDKTLEKLSER
YYWKGMVNDVxxFCKYCDKCQRANRAFEKHSAELHPIKVKDEVWSTVGIDLIGPLPLTEKGNKYIITATCLxSKWPEAAS
LSDKTATSAAEFLYTCFxRHGCCEVQISDQGREFVNEVNHELNKMMGTKCNVTSAYHPQSNGEDERFNQTLQRQLLKYVD
EKQNTWDLYIESILFSYRVSVQDSTKQTPFYLVYGRQARLPVDLQMKSIKNNFENKPTIDDSLKNRESLLENLIGMRKNA
LQNIEKAQERQKKAYDAKHCSENQLFKVGTQVLIKNSKKLxRKxSKMEPNWTGPYKICQILKKNTFRLCNINDCNKKLKQ
VYNMTRLKIYYPKSENMVPNNIVEIVQSNSEEKFKSISEQLSIFTLTMKKVILDGKELTDEHINFAQLIIKKQFPDIIGL
QDTLLSQTDGFKAVSTDRISVQIHFINSHWVTSCSINGSISLYDSMYSKLDSHLINQLARCYKNFADYDCEFPPSIVVNx
KSVQQQTGSLDCGLFAIANAVHLALxxQPENLSYNQKFMRQHLEKMFYAGQFKPFPLLNKRSKLN
>Ginger1-1_BF#DNA/Ginger 1802-3436 [Branchiostoma floridae]
MDEQLYSQILHFYTCSDGERKYPADIYNLQPIDRTNAKSGFRQVAKPFHAENGALYRGNQEVVVKSRVKSILKAFHDDPA
TGGHFGRDKTLQKVTKRFFWKGMKKDVEAHAHKCQKCFVVNPKVSREAPPLHSISVPSKVWSMVGIDLIGPLQETKSGNK
YIVAVTDHFSKWSEAKAIPDKSATSVAEFLFSVVCRLGCPDVMISDQGREFVNEVIDKVMDHFNTDHRISSAYHPQTNGQ
RERDNRTLKDSLSKVVNECGDDWDNYIEGVLFAHRTSIHASTKCTPFEAMYGRQAKLPVDLKPVDDNEMIEAADTITPDT
LQTLSSIREEINASIESNIVAAQKRQKRNYDLRHASQTAIAVGSTVYMKNKLTIHRMGPGIKYRWVGPYTVVESLSKGRV
KLQNAKGVVLRNTYHGSGLKVFEEGESAASVHAAESASVHAAESVSVHAAESVSVHAAESVSVHAAESASVHAAESASVH
AAESASVHAADCNVPRSCEESVSGCQDLDELLSLVGNASRTSEHQEDNSVPTSAASSVAPNFGII
>Ginger1-12_HM#DNA/Ginger 650-2986 via via genewise with Ginger1-7_HM, 1 intron (1408:1686), 2 frameshifts  [Hydra magnipapillata]
MEATLNKIQHEIEDKNNKLDEEIYMNLKHYILNKVYPPGYDKAQKRRLRQKATSFLIVKDFLYHKSKSVHSKLGRVIIDE
DQQKNIIKSMHDGIIGGCHFGQSATIAKVTDRYWWPCIAADVKDFVRKCTACQAVNPVNKPGPSSLHPVKVMHMFHRWGI
DLIGPLKETKKGKKSICVATEYLTKWAEVKAIREKNAISVHAFLMKLVFRFGASNVILHDQDKEFNNQLVDDLCEQMKIT
VAMTSAYHPQTNGLTEQFNQTLVRHLLKLINKENDDWDLLXPVVFAYRINIQASVKYSLFQLMYGVKARLPIDIEKDICE
ASVDENDDVLQRIITLGQSLQNTREQAKKNIEKAQAQQKVKYDLKHSAATYKVGQMVLKYNRRRDTRMGDKLSTRFTGPF
KIIGELGKGVYRLQLGEKIIKQVVNASNLKLWFPPTLITSPTTVSLEDVHLKQAITSIEIIDLENSPPPIAWWIQELNLK
QEDKEILKSNEWLNDRIIDAVNTIVSLNLANEEPCQSTLLSQGIEGFKALSYDSIKILHDLNHWVCTACFDGNVILQTVL
VDQYQSMSDAKCDSYGDSYMRQLYAKFVNKSGNLAIKVVPVQHQTNAYDCGVFAAAFAFTWALGLEDFYYNEDDMRKHLA
SCLETRIPIAFPKKINKQTRKKISNYNNCHITFNTVFICNLFILKM
>Ginger2-1_MG#DNA/Ginger 160-1863 [Malassezia globosa]
MGYQASLHEGLEHASSQAHVPIQEGFTNEHRNLFDEWLMSNTFKSVVIREQYLMRLHVLHALANGHNSRQLLKDGVCSLS
FIQKTRQNYSLNERGELYYHARKGKATLLVIPDDEVFDVIVREHNAIHHQGTSKTWYEISRRYHGIPKRAVDWVLRHCLL
CHDHRPGPRPAPTQKISSHEVMERVQMDLIDMRREPDRKYRWILHIKDHYSRFCMLYPLRRRRGKHVVRCFLQWIATMGP
PMILQTDNGVEFVNALITQVAVQHQILIRRGQSGRPRSQGLIERANGHVRNLIAKWCNRFGENRWSRSLPSIALACNTSV
HSSTRRTPFEMVFGRAPSWQRLARLDPLDPTLTNMELGLEYEQQQSQSSVDTNGPPTPSPVRSVVPPMALSPPSETLPSP
SPPPSPSPSPSSSSSQRISSDDPSALVSQSRKTTSVPIVNQEPIPREVYFRRGTRVSVSLTGVDRKPLDVYRLPALILSH
RKNKGYRVCTAWGILSNRVPARHVLPLPEGHPFPARAFRYLQPGRRTPRVDVSFCMQQLRLEEDTVSATTAADNDATTDT
DIANVTNI
>Ginger2-1_AP#DNA/Ginger 688-2644 via GenScan + upstream homology, 3 introns (1628:1695, 1770:2088, 2121:2193) [Acyrthosiphon pisum]
IYDKCVEDVLKFKGKESKQRAVCKLLKIYDVVKIMSLNQLFVPLKPGETKIIYFVKNEDLFDIIHDAHIKTGHGGRTRVI
SELQTKYKNITYKSVTLFLSLCVQCQRKQKVPRKGIVVKPIISRELNSRCQVDLVDMQTCKDGEYKFILNYHYHLTKFIQ
LRPLKSKTAEEVALMLLPIFLTFGAPNILHSDNGREFSNKIIMDLCSRWEGVKIVHGKPRHSQCQGSIERANQDFQNILR
AMMHDKNTTKWSEALPFVQFAKNTAYHQGIKQTPYEAMFGNVAKRGLATSSLPREQIKDIETEEQLEQIIQSIDDDNTEQ
VEQHDNHIQQLEQILQSLLMTSNIITLSRAAARMGLELQAERMLRSSRQKFTPAKPGDTVRIRVPDVDRGRMDPQNILAV
VVAVDNEFYTLGTKEGVINQLYTRNQFAVCKEQLLSPEEVATDQSVSLRKASTSISKTGGQGYMKCNCKAKCVSKKCSYR
SSGILCNSKCHNSLSCCNK
>Ginger1-1_AP#DNA/Ginger 94-4833 via genewise with Ginger1-11_HM, 4 introns (529:767, 1107:1272, 1508:2522, 3119:4551) [Acyrthosiphon pisum]
IINKTKYEHVNLTAVLNYIQGKGYPSYIITKNEKANIRRQCKFFTIQCDSLVHKKKLAKVIFDAEERKRIIEMVHDGSDQ
SLQSSALSSHRGRDATQRVLQKRFYWPNMTVDVKNYVRECVICQKVNPSSLKFVPELKSVHVPKKVFKQIGVDLITLPEV
NNLRYVVVVVCYFSKWCEAKALMDKTAESVAKFLYDDICRHGCPEIQISDQGREFVNKLSDELFRLTGTQQRVTSPYHPQ
ANGLVERLNRTLKTSLLKVFKWPDILQGILFAYRTTVHCSTKYSPFFMLYQREPIIPIDVEVTNNTQNELFEDRELSYDF
DETTFSKTVQTMLDLRRVVESKAIQNINEAQLRQRESYAKRHLKADTKFKPGDKVLLKNLRRNDRKGGWSLMPWIGPFTI
ESISDKNTCVLRRGDKLIKTHQHLKNIKKFFERTEDISQDPTDDEVIVSDENVITVKKSAFRPVSKLWMANKCLELNVPI
TQKHQCVAKQSYKRLSKPKQTIDVIGDGNCWFRCISVWLTNSEDYHELIRSCVYKFFTEDSRVNSFVGDIEKYLEINPVN
ISGTWVTEAEIFANSLLLKTSIYIYSDYHCLWQLFGKDGSYKDGTNPNENCLYISHVNRNHYQVIIEIE
>CryptonS-10_PI_p2#DNA/Crypton 2412-2924 Contains CHROMO domain also present at the C-terminus of retrotransposon pols. [Phytophthora infestans]
MPTIKPTKHPVSSWKEFKTLCITTGKAYKLRLDDEAIRHLRLTLNTIVASASLLPEAIQVAYEAMKERKKRRAGLDDVRE
WLVEPPPSEDDDDHVGGEKXHHVRKVMTWKREKRQTYYXVDWQPTWEPREHIHKSVVAAFEKERRLLVRKRFFEDEAVED
NSLNDAEGNAE
>CryptonS-7_PS_yr#DNA/Crypton 253-2432 via via genewise with CryptonS-18_PI_yr, 1 intron (839:900) [Phytophthora sojae]
MVGTYFFVQSEKSRQASMSIASLAPANSKKARTTAINSFTTFLAAESMTLEATHQLIDGDKTGKVLRIILDKYAYSLATS
AEKVRATNTCLAYYGNVKNWLVDKYPLQGALVKSQLQKILSGLGKYCSNREEVGDEKKAPPCSKQDLEAMVSLLYSTAAT
ESEYLDAALVVMMWYLYGRSSDAETVEKSQLSILPGGVLFLRFKRVKTALLQGISLFKDPTNFLTCPLQALAVALVMQKA
PSQRMFPQFIAKKHRSDDIDDVQELTLIELLEVDDDQPSMEESEAPSTKRAVPGAQAYVNRLLVRVKKLADLRSIRMTPD
LTSHSFRRGGAMHANDGTLAENWIIERGGWQLDRVNKAFGYMLGTTQADQKVSRVLSGWKPKDGARLPTLAALDTPVLVR
ARKMQQLLFSSTMAFADAALNLDDDVADVLTATLFMHYPDMLVLCPSSPLITKIRELLAQRAIGESELLAWSVTINQAFV
APPASEASASAGEEQSPALIDLIKRQSEQIDVLILQNKRLDERILAVEAHLQALTNTAATQSANTDATLPAPEQPPPIGA
TTTRPKKKGAQSLSAIWFEWFTAEPRVYVSRSVKKTALYEYRHIAGYLMLFLPEGFALDTSSPAYKSEVLExGDKAQQNA
LTFLKSHGSSAVAAGSALKALRQMQKLGKLDALIAQFHERVDQGVIVDPTPPSAxPSFIRLXPAQG
>CryptonS-17_PI_yr#DNA/Crypton 295-2470 via genewise with CryptonS-7_PS_yr, 1 intron (830:899) [Phytophthora infestans]
MSIASLAPPNSKKARVTAINSFSTFLSSENITLEHVQQLIDADKTGRVLRIVLDKYAYSLARSTDKTRSTNTCLAYFGNV
KNWLIDKYPQQGGTVKPQLQKILSGLGKYCTNREDGAFEKKAPPCSKQDLENIARLLYTSDSAESIYPDAALVVMLWYLY
GRSSDAEQLEKNQLSILPGGVLFLRFKRIKTALLQGVSLFKDPTSFLTCPLFVLAAALTIQNAPSKRLFPQFTSTRHIGA
NAGDVEDLSLVELLEADDSPASLPDLQQSPATRSVPGAQAYVNRLLVRVKNIADQKQVKLTQGLTSHSFRRGAAMHANDG
TLAENWIIERGGWQLDRVNKAFGYMLGTTQADQQVARVLSGWKPKEGARLPSLRILEPSVLFRAQALHGLLFTSSLGFAE
PGMNLNEDVAEVLSATLIMHYPDMLLLSREGALVARIRAAMSARAIGEAEVLAWSSTIRRAFMPPSAITKPSVSDSHSAE
VLSLMKRQSEQISVLILQNQRLEERLLAVEAKLHSPSAPAKTVAGCVSQPDQQIAIRTVRPKKKGSQSLAAVWYEWFTAE
PRVYASRSVKKTTLYELRHTAGYMMLFLPHGFSLDASSPAFKSEVVALGEKAQVSTRDFLKTNGSSAAAAGTALKALRNL
HKAGKLDAHITQFHERAERGDVVDPTPPSALPKFIRNKPPPSAEPVVHIVQLSNSTRSHLTL
>CryptonS-19_PI_p2#DNA/Crypton 2520-3071 R Similar to CryptonS-3_PS_p2 [Phytophthora infestans]
MQSNNLRRTRGGPMCQNQSGTSVRYSLCGLYSVNNALQHRDMLSVETMAPIVRRLNEKSGESEGLEPHGNDKYGAYSTAA
LHEALRAKGYQLRYLNNMATFNCSKKKWFKKVARSKYKHLMIIGRAMGQKKGTWHCIARALVRDKHYFIDSDEFVYKAST
EEGLRHFFAEVDGVYAIEPSNQSK
>CryptonS-18_PI_pt#DNA/Crypton 2724-5429 GenScan prediction, 3 introns (3306:3361, 3459:3509, 4560:4881) Last exon contains CHROMO domain also present at the C-terminus of retrotransposon pols and seems to be a single exon protein in other Cryptons. [Phytophthora infestans]
METAAAQGVTEGATARRCTSLTLMQKLEKLIVWEANPEWGPTRAARELSVSRGALSRWKKEYPDPSRVRNDSTLGDGARK
RAVGGGRKRKPPAFETRVLEYYDTCLREDGKATYHDVFTYCSTIPEFLLKDLGAQKVYVTRFIKRYKSSPAAPSEQETTC
GSRATELFKPHTDTSDELXSRGIQPCVPDESNELRYAIPSRYGQIQNYQAEQLNRTTSTYETVTHSAGNDVGDTATGTPP
VNDNGEGTVNLDGERGDCKTGHDXEEDPTSDDDEYDEAEEEDDEADDDYNDDPEPDESDDDGPFADDHDEELEVDYARQN
QHTKTVTGSKPIASRRQRDLLAKRSRAVFSFTVRNLDTSMLGEERSVKVFKDDIMTLKPFGWLADVVIDYAIYKRIKLTG
GSVKLLGASLFSQIXQAKSGGESSFLDVKKLVDKIDWDLYFAVLIPVWGDNHWSLLVVEEPAKPSRRMFHVDSCVGIHVS
SHVFSIATQFLAEVCGVASDGSATTSVCETHPQQKNNSDCGVYMLYYMEKIALYITQNKNKSIQSEIKKLTSGMITGRSD
KFRIKMHQTLSNLTVLKTKHFGFRRHTVKFSMLSIETIITYRDFKTLCITFAKAAKLRIMDASIRALRNSMIQTIGTRDR
VPEALRAIFVRLTDKCKAKINKKKRGLVELDDIQEWLIPPTDGAVGQVRGTYGVRRLLQCVVMGNKAHYLVDWEPTLEPR
ENISKELITQFNRDRRHLVRSTFIDDEAIEDNTSSAT
>Ginger2-1_TS#DNA/Ginger 1064-2626 [Trichinella spiralis]
MDRKAVFEEKLRALIKEKGQNGTIFPISQRDQIITDILRIQSDGPKSARDYNLKNRYGVLKIGEENKLIRLGKNDAIRCI
ASIEEMFDIINDAHQKIGHGGEKKTFREAQNKWANVTQEACHLFLTFCEECHKKRARKLPKSLVVKPLVSTNLMSRAQVD
LINFQTMPDGDFKYIMTYLNHFTKFCILSPLKSKRTEEVASKLLEIFLTFGAPSILQSDNGREFSNAIIAELKTCWPELK
LVTGRPRHPQSQGAVERLNGVVQDKLAIWMRENGCKRWSMGLKFVQWQINVSVHETTGQSPFKVTFGEEPRIGLESYVLP
KSLVDAAKTEEEIEEFLTSHEANDEDSLNRDGKNYEENESNIMKHFPETFIKARKEAASGQTRAAAKMTRRSKKMLIPLQ
IGQNCTLRVPDVDRGPADPKNFLVVVMAECEGLYTVGCREGKLASKFTAADLQVISENLLSIDEVPDAEIPLRTAVTKAT
GGQGYVKCMCLSGCSSGRCSCSRKRVLCNSRCHPGKSCNNI
>HAT1_DR_tp#DNA/hAT-Ac 1149-2888 wised (genewise) with Furousha and AF486809_1_Bactrocera (2 introns, who knows) [Danio]
GRQKELDEALVDMVVKDLQPFTIVEDMGFRAFVNKLDPSYVLPSRKALKTMVMEKYNSTKEKIMGDIQKAQFVSLTADMW
SSINMDGYLDVTCHFITPEAKMATVVLGVVRFYQTHTAQHLMEAKTLLMSEWGITSKVQCLVTDNASNMMLSAQLLHLRH
IPCFAHNLNLIVKKALDQTPLVSEIRQKARKIVGLFRSSCKAKDKLEEMQTLMGRPTLKLIQEVETRWNSTYDMLQRLFE
QREPVAAAISSLKADTALLSSMEYDVVQEAMSLLQPFKLATTELSEEQRVSASKLIPLYRMLQHKLTEKKGLAKQESVVQ
LGSHLQEGLQSRCGGYESFRTLALATLLDPRFKTVAFGNTGKGQEAERHLTMECASLMRNQTSHGEPFYFSCIMQLHIAE
SQDSLWELFDNRVRESNLTSSVTADATVEVKKYITDAFLPRNEDPLKYWKERENIFPNLYVLAQKYLCMPATSVPCERIF
SKAGEIICKKRSRPSPSTAEHLIFLNKNL
>ATHAT10_tp#DNA/hAT-Ac 883-2872 includes a frameshift [Arabidopsis]
MSSDSFRSNIGTPIEDVHNSTPAINTQESATEEQANTSSGKQRLNASDIFKVHFRKEKIDGKMKACCNYCNKSFFWKSGS
GYGSYRYHLVNNHPEKYGGETQNATSANLSNFHYSDKRNREELAKCVAVDHLSFSFGEKLGFNNYCQKALNPQAKRVPRT
TLTRTLKSLYRKTKKRFRMFVFLPNNVSICSDIWSDQWQIHHYMGITSHWLDSDWIIQKRIIAFRVFYERHTSDNIFKLI
KIILEEYNLTNKIFSISFDNASANTASIDELINNCSPILGGKYFHVRCICHVLNLCVQDGLLVSQNNLISPIKTALNYLW
GHPQLMKKWFRFCKMHNVSPKRFSRDVPTRWNSTYDMLVDSIGYKDLLCSFIQQNCSSLTLWPTHWDDCNALLKLLKCFN
DATFLLSGVYYHTSHLLLYECVNIADVMHEHENNTVLSSCITSMRDKWLKYYREIPPLNLLASVFDPRTKFDGLYDYLVA
YYDLLHLSDSINVPSIISNSRKDIENLYDEYYRLYEHLVPQGTESSLQNDMSSTSTLSLAERMRRRKRQRPSQGNNAELE
KYLSTNFEFSDADAGNNFQIIHWWKSHQSQYPILAMIAKDVLSSPVSTVSVERAFSMGGQILDETRSRMSPDSLEAQACL
DDWTRAGYRQQEFLRENEEELEDIDSDVSSTRSEDSD
>HAT1_MT_tp#DNA/hAT-Ac 1186-2961  [Medicago truncatula]
MLQELQSVCASNMRDNDIDSSGSHENMCVDGEIESQAREIPLVPPIDQNAQEVSSDPKDKKRKGKAKAKDKSKGKALTSD
VWLYLVKVGIVDGVEKCRCKACHKLLTCESGSGTSHLKRHVRSCSKTIKNHDVGEMMIDVEGKLRKKKFDPMANREFLAR
IMITHGAPFNMVEWKVFREYQKFLNDDCVFVSRNTIAKEILNVYRDEKQKLKSQLAQIRGRVCLTSDCWTACSNEGYISL
TAHYVNVNWKLESKILAFAHMEPPHSGRDLALKVLEMLDDWGIEKKIFSITLDNASANNSMANFLKEHLSLSNSLLLDGE
FFHIRCSAHILNLIVQDGLKVVSDALHKIRQSVAYVRVTEGRTLLFSECVRIVGDIDTTIGLRLDCVTRWNSTYIMLQSA
LVYRRAFYSLSLRDSNFKCCPTSEEWRRAEIMCEILKPFFTITNLISGSSYPTSNLYFGEIWKIECLIRSYLTSEDLLIQ
KMAENMKVKFDKYWSDYNVVLAVGAVLDPTKKFNFLKFAYEKLDPLTSEEKLKKVKMTLGKLFSEYIKNGIPSNLSSSQV
QPSYGGGTRITSSSYDVSSYIFSLFYSFINYL
>HAT-2_AG_tp#DNA/hAT-Ac 2688-4475 [Anopheles gambiae]
MASNVATSSSIWDHFTRNGTKAKCRYCYNEIAFTKGSTSNLKRHMKAKHPSISLERQHLASTTSPSTQNSEPGPSCSSRP
PNLISNFFKQPMNSETKRKLDMMLLKLICKDCLPLSIVESEAFKTFVGCLNQNYDLPTRKNVSNALLPSIYNEILVKVQG
EVRNATSIALTTDGWTNVNNTSFLGLTAHFIDNDYKLRSCLLECSEISLSHSGQNIAAWIKEVIIKYEIQDKIVGIVTDN
AANMKSAARELEFNHVTCFAHSLHLIVKDAIKKSIISTVDEVKRIVMYFKKSPKATNELADTQSKFNLPNLKLKQDVPTR
WNSTYDMLNRFYKNKIAIVACADKLNTLDPIKIDWAILEHSLNALKIFDVATNMVSAEKNITVSHVGLLSKMIIRKLNET
DYTIPELGNLVTHLKEGVKKRLEIYSNNQIIAKSMLLDPRIKKQGFHEEPLKYRETYELIIQELIPFQTPSMNAQEPHNI
DNEANLLLGEFITWVNNAECEIESPIELAKNELNSFLKIRNIDIKNDPLEWWRIHSSKYPSIYALAKTIICIPGTSVPCE
RLFSKAGQIYSDKRSRLHPKKFKEIIFIQQNVDKF
>hAT-1_DSi#DNA/hAT-Ac 357-2202 via genewise with HAT-1_DP_tp, 1 intron (561:654) [Drosophila simulans]
MASKRKHSKVWNFFDSVDEKSAKCKYCKTVLSVAGGSQGNLSRHLKNKHPAALEETKRQTNESRQEANQVITSFIQRPPA
AGKAEKIDRQLVRMIAKGHHALRIVEEPDFKQLIDDVSNCPGYKMPTRKTLSNVLLPKLRDEIVGSVKEKMELASAVCLT
TDCWTSLANESYIAVTAHFIESEATVMSSHMIACEAFVEQHSGQNLCAFLQKIAERWSIENKISAVVSDNAANIVNAIKT
GNWPHIPCFAHSLNLIVQKGLREISVVQNKVKFIVEFFNRSTFGLKKLKSTQTQLNLPDLKLIQDVSTRWNSTFKMLERL
VVLKDALILTLSTLRSELNLSQNEWAIVEELLPILKPFMEVTEEISAEKNVTLSKVIVLAILLQNCLNNKTPKDKCVAAL
VAVLKAEMNRRFCKLESNELYAESNILDPRFKGRWFKSKEEYEKAVCNLKRKVTPIRLNSENYEFESPAFETNSANQSSV
WCDFDSEFKNTTKAANTTGSAEKEMEKYLEEEFIPRTADPLVWWEQRKKLYPHLYSYSLKRLCLMATSVPCERLFSSAGE
IIRKRRMLLKPNKVENLMFLHSNM
>ATHAT2_tp#DNA/hAT-Ac 742-2936 wised with ATHAT3 One stopcodon & 1 frameshift in sequence, no introns (RepBase annotation has 5) [Arabidopsis]
MDSSPFPSNSDVGNEKVTEPESDAANKRKDVQEDSGATSKPPKTKKPSQRSFVWDHYTRFEDNPKRCKCNYCHRTYGCDS
KDGTSNLKNHLRICKHYQAWSQKAKQTVFNNQGHLQSGKVTXEILREASNEMLVLGELPLSFIESAAWKHLCEKVNLYAP
HSRRTCMKDIVKMYVGMKASLKTWIATTNPRVSLTTDIWTAKATVASYMVITAHFVDSAWKLRKLIIGFKYITDHKGATI
ARILLECLAECGIEKIFTITVDNETTNTSALKKFQETFSLRSNEAFVLEGEGMHVRCAAHIINLIVKEGLVELGDHVAAI
RNSVQYVRSSTSRCDSFDQKVVSGKMTRGSLPLDIKTRWNSTYLMLKRAMEFRLAFDKMEAEDKLYNDYFNEVDDGKXKI
GPPTRADWNAVERLVRFLIIFYNSTLVVSASNSVASYKCYGEIVTIETNLVSLGNNFDRDLKIKAKAMLGKFVKYWDGTR
NINVYLIVASVFDPRKKMQFANMCFAKLYGKDTTDAKEMAEKVNNVLTSLFKEYSSRFQKTSSGSGPSSQSTQTSITASQ
GEPSDLMSDSMGYERMDFAYKELVDEIGVDDGRDELDVYLKEKVENPKTIIGLEWEVLSWWKLNCGRFPVLSAITKDVLA
MQVSSVASESAFSNSGRVIEPHRSCLTHYMVKVLLCTEQWMKNVNHLGNKSVVTIKELLADIVELDNIEKGKFIPYALFQ
FSLNSFNCSQF
>hAT-9_AP_tp#DNA/hAT 166-777 Tiny fragment closest to hAT-32_SM [Acyrthosiphon pisum] 
LHKMCIFNKYLIKYFKFYSKFDIHADFARSPTFLTNIIRPNKTKYFILFILFNDNSIKNELSIILSNFQCITDTITCLEK
SGVNLGKSLELVQNVENKLSEGGRGIEFAKVKLSEVLSKNPGLSQIKKISEIISGEIRNDDEDLAELSPEDISCFKYAPI
VSADVERSFSKYKVMLRDNRRSFQFDNLKAHFVTSCWYSFNNY
>40644291_Rcr#DNA/hAT gi|40644291|emb|CAD54182.1| transposase; (93% identical to gi|40644293|emb|CAD54183.1| transposase in Rana perezi) [Rana cretensis]
TVLNYSLERDRKMREYKRTLVDAMLLAFPPDSGATVEAQGQGGGGGGGEVAEATRAPPAPQEGRVSMAEMWKSFVSAPQQ
TAAPAAHMERLSRRQHFTNMVEQYVCTRLHVVNDGSAPFNLWVSKLGTWPELALYALKVLACPAASVLSERVFSTAGGVI
TDKRNRLSRDNVDKLTF
>4218001_Ath#DNA/hAT-Ac gi|4218001|gb|AAD12209.1| Ac-like transposase  [Arabidopsis thaliana]
MFQGCEETVGIHTKAGLILDVTTRWNSTYLMLSKAIQFKEVSRNLSELEPSYKSFPSKLEWSRGELICKFLRPFEEMTKL
ISGSSYPTASLYFMHVWKIESWLRAHERTDDEIIFDMVESMKLKFKILDPRLKFAFLRYCYKSLKPSTCESKLEHIRKKM
EKLYRFYKKNPKNSASTFQLMEDSLPAGYGNVRTGNSALYEYLDEPTLDMVAFRSLDVLKYWKDNGSRFKELSRMVCDVL
CIPITTMSSESSFSVGSKVLNKYKSRLLPSNVQALICARNWLHGFKEISESEFSEAREEEEEGEEGGR
>53982308_Osa#DNA/hAT-Ac gi|53982308|gb|AAV25287.1| hypothetical protein [Oryza sativa]
MGWIEMGPMDWFQVQVKQKKRKVRAPPGAGEDVLLWRSGRVANLPEKPKYHDEFQDFKKKIRRQLNKLNNKYVHTNVREF
SLRLTATKKSGTSHLINHIAESCPAIDGDARINFLATIKKQTGEGFVFVPKRSRELMVRFFIHAEVPFKKIEDPYFLEWV
ESMQPTFKVVGCQTLRDDAFNLYERMREDLHAELHNLDSHVCLTSDMWTSIQNIGYMVVTAHYIDREFNIKKKIISFKEL
KYPHTGFAIEEAIMSCLTYWGIRSKLFTITLDNASNNNSACQELIKNHKNALMFEGQHLHVRCCAHILNILVQDDMKIIK
PTIHKLRELLKHLDSSVSRMQDFNSMANSKNLPSKLSFSFDTPTRWNSTYKMIVEGLMYRSVLDSYANQHGEVAPTELEW
QKVESICAFLKVFEEATLSVSADRKPTAHRFLPLVLQIRHALNDPDWQTSDILKVLAAAMLSKFVKYWDSGFNSALVIAT
MLDPRRKGDYLNFFYEKTSNSVTEIVEKVGSAEDWLKDYYEKYEGFVRRNDEHMLSHSREGSSSVGSPVLGKRKLEEEFA
LYKSRRRTARQTKSEFAIYLEEDVEEDSESFDVLDWWKRHAQKFPVLSSMARDFLAIPLSTVSSELAFSCGGRILGDTRS
SLTPEMLEALICAKDWLIKANDPLINIPGAEGGNLS
>34894194_Osa#DNA/hAT-Ac gi|34894194|ref|NP_908422.1| P0439B06.18 [Oryza sativa]
MGNATLTDMTLLPSVDPDDALSGMAATSSAPAQGAKPKKKTMKSLYLQFFDTAPDGKSRVCKLCKKSYCMTTATGNLGKH
LNNRHPGYCQLSEGEATQSTTPTSMVSRAKRSQPLARTRSQAQSQSQVQPQSQVQHQPQPQTVSKVRHQPKAKPAIDIDH
VNWLLLRWLISSSLPTSTLEDSMLIDSCRYLNPPVQLWPKEKAHEIVLQVFRSMKEDVKASLQCVSSRFSITLDFWTSYE
QIVYLSVKCYWIDEGWALRKVLLDVRRIPYPCTGPEILQVLMNVLHEFNIDSKILACTHNNSQHAIHACHELRQELESRK
LPFCYIPCAARMLKIIIKDGLENVRPVLSKIREFVLETNSNQDMMEDFMHWTEVYQEGSWKLPFDHSSNWSGDYNMLDVV
KKAPNAMDNTIKKFEGVFGPRDWVLSSTEKSAVNSLHSYLEPFYKTTTNLCTCKIPTVGLVFFFMDHVIELINVCHDSTR
QDWLKKIASDMSETAHNFASQAYNIYTFTAAILDPRIKGELIPETLNSTSNLEDARNQFVRDYSSTFEAVGNGYNTQDTT
DGGDAFSFAEEIVRKRRRVSMITAADELSQYLAEPPAPISTDALEWWKGHSSRYPRLSLMARDFLAIQGTSLDPEELFTS
KGDSMRKQHYCLPLSSIQATMCVKSWMQSGYQFNFQSTIIDFERLVESAVAPDAVDAPEFS
>Transib-2_DAn#DNA/CMC-Transib 456-2643  [Drosophila ananassae]
IFNLYNVIKYFCSFLLLFLPLSVKDKVEFSHSTLFEVWQRSNKSKDAVFDYILEKLGTQNLDSEDIQNIMKKIKSFDIYI
SQKLAKYNRNVTRFKENKADWLNSKMIIEFSVTSSPSSIQNVKRGRPQMSYEHGGKRLKHKLASNLANCEDNNTSLLLHA
AAVSAKKANEKDIVCVLKNSVLSENGAKEAKRKLFVPEPVPLTPDEALAFILENSLSKSQYKNIRDTNSTHLSDIYPPYD
KVVKAKLDCRPEDIIVTEVSCKVTLQNLLNHTASRILQMQEDVLRSFKSIKDLILIVSYGFDGSTGQSIYKQKFNDHEPV
SSDHSLFVTTIIPLTLKDNIGTILWMNRTPQSVRFCRPLKLEFKKETSEHILSEKKDLDEQIKSLSPFVHQITDDQTVLV
SFDLHMTLIDGKVLNVLTNTNSCQKCPVCGSGPKQFLEIHDIHSPTFKPKPESLQYGVSPLHAWIRFFEFLLNISSRIHI
CKWQIRDGNDKLIMAATKREIQERMRREMGLNVDKPKQNGSGNTNDGNTARMAFKNVELLAEILKMDFDILNRFKIILIT
ISCELSVNADKFQDFCDITFKLYLEKYRWYPMSPTVHKILVHGADIMNNSVVPVGCLGESASEARNKFYKIYRRSHARQN
SRLNNIMDVFQRSMDSSDPLLSSLHLNKRLKKNKSKNLPHEVIELLEIPIIPSNLTSCNTTEDEQNNSSSDSNNSFLFEL
DAEES
>Transib-1_DF#DNA/CMC-Transib 451-2651 via tfasty with Transib-1_DAn, 1 frameshift and 1 stopcodon. [Drosophila ficusphila]
MFNKSRNCLVKYNNNPICGFLRLFRxLHFLDVHEFCHATLLDVWIDSARDSTALAEWIFGQINEGKLTVDQKGELHKKIK
SFEIYIKSNLQKCSRNMRTFKNKHSEWLSKSLKIVLDNQADIPNLKKGRPKLAYEEGGTRLKRKLASDVAVTNDNDTKLL
IHAATMSARKTNENNTAFLLQNSCTSERQATEAKRKILAAEAIPLTINDALEFLLENSLSKQLYNEIRHMSKIHNCDIYP
NYHKVQEAKLQLRPVGITVTETVAKVALQNLLNHTASRILLLQEEIFVNLESVSSVKLIASYGFDGSSGQSMYKKRFESN
ETDTSDQSLFVTTVIPLKLVDEKGTIFWNNGSPQSVRFCRPLKMEFAKETIDHILKEKNDLDGQIQNLTPCEITILDERK
ITVSYELYMTLIDGKVLNVVTGTNSCQLCSICGAGPKQFMNSVDVKSFPPKPGHLQYGVSPLHAWIRVFELLLKISYRMQ
FKKWQARNESDKLVMLSKKKNVQKRMWQEMGLHVDKPKQNGSGNTNDGNTARKAFSNTNLFASILDVDLELINSLHTILI
AINCEFAIDPQKFQKFSEKTIKLYMLNYPWYPMSPTLHKILIHGSQIIAESVVPVGCLGENASEARNKFYKRDRRMHARQ
NSRINNMMDVFHRSMDSSDPFISSISIKKRAARHKKQPLPQDVIELFAAPQNDIPSITESFPNNSSFNDISDDSEDSDAN
EINPFSFELAVEND
>Transib-5_DBp#DNA/CMC-Transib 56-2079 via tfasty with Transib-1_DAn, 2 frameshifts and 2 stopcodons. [Drosophila bipectinata]
FNNNTLVDIWNNNNRNADAVTAYIMEEINEDNLNKSNIQQIKAKETNFEYYIKRYLRKYSRNHERFKSIHTEWFAKCMEI
KIDVEDTAKPSPSKMGRPKVGYAEAGPRLRRQMASEVAVQNDCSTALLLHAAPASARKSNENKVVGLLRNVMTEENVVNP
EITNQARPARISNIEALPFLLENNFTKQQYISCTQLYKAHGCIICPGYDLIRSTTFQCRPSGISISDTVAKVYLRGLLNH
TAERILTLQNDVLEKMENVTDLPISYGFDRSAGQSSYKQKFDSDxPDFLDQSLFVSTVILIRLIDSSNRVIWLNRSPQSV
RFCRPLKIEYAKESSAKILGEKENLDMQVAKLEKFKWQRKNISVDFKTYMSLIDGKVLNVITGTKSNQCCPICAVNPKRL
IEITDFNSETFRPQPGSLKYGVSPLHAWIRFMEFVLNISYRMDIKTxQIKGDDKNKIIIRKKEIQTNSRKVMGLHISVPK
QYGSGNSNDGNTARRIFANTKLLASITLFDEVILNNFYYMLIAASCEFSISPKKYRKFCKDTFNLYMKTYPWYPKSPTVH
KILVHGANIINVCIVPVECLRENASKARNKHYKMDRCSHARKNSGLSNVADDFNRAMDSSDPLISGYYINKRLQNLKKKL
LPIEVVNLLENPTSELSSYNFFNDEKPNLTTKAM
>Transib-7_DAn#DNA/CMC-Transib 643-2708 via tfasty with Transib-2_HM, 1 frameshift and 3 stopcodons. [Drosophila ananassae]
MPFAPTKRDLFLFLKASEAKTYDAKRIHLQNYVIEKLKYKNCPKETEKKRFCSLFRISVKIFLENxVIVTDTGIVTTLLE
KNATWLDKTVTFPCETSVIEKCTPSHDDTIRNGGTKRGRPPKSFEDINERSKKRRVNSLLKSTGSELAYAASVNLRSEGN
SSGANLVWKVASSKVGDGSQPVNTFTSYTEDEALALMVSNKLTKHQYLNIRSGIKERWHxxKDTPSYHKIIEAKKRCYPN
NITITEQSAEVQLQSLLNHLSNRLVQVVQPVLRTLPSNCLSNLILTCKWGFDGSSGHSAYKQRSFEDFNDQNIMITSLVP
LELYTPKSNSCQKIILWKNCRPSSSRSCVPIKIHFTKETTAVSLSIRDEIESQIGNLVPSTIQNDEFHNISISHQMLLTM
IDGKVCNALTQTASTQRCYVCGALPSIMNDINTSIQRETDPSTFEFGLSPLHAKIRFFECLLHIAYRLDFKKWQVRSPSE
KASFKARKAYIQAAFKEKMGLLVDFPKTGGSGSTNDGNTARRFFNDPDISSEITGIDIILIKRFGIILQTLSSGFEINSK
KFEVYALDTAKMYVNLYNWYNMPASVHKILIHGAAIIKTALLPIGQLSEEAQESCNKDLKRFRENNTRKISRKDTMMDLM
HNLLISSDPVILSKSKYAQKQPKPLAKEVMELLRLPLDQNVCSDSDSDS
>Transib-6_DBp#DNA/CMC-Transib 615-2630  [Drosophila bipectinata]
MAVRSFFERHSKNNVDKDILKEKSSQFCKIMRYKWNSCRMNYKYFASKYGKWISSTTNLPTKKRNTSTGRPLIPFVSKGE
RAQRQEAAELSKSQNNEVLLLVQAASTAARKQGLHDLGAVLKILASTPEKATEVREFLTKPIEQPIRASKDDALALILDQ
GFTKEQYCAFRDDVRKRKVDIYPLYKDVAKQKKKCRPVNIDVSDTVAKVSMQSLLEHTVSRIVALQEDVIINVLANQQTN
FLSAELIVSYGFDGSTGQANYNQAYADKKQYDADSCLFATTITPLRMIDASGNYLWNNRTPQSIRFCRPLKLEFLKETKE
SILKEKKDIEKEIEELMPCKISLNDRQSVYVRFSPYFTAIDGKVLNALTETKSFQQCPICQANQNDFLGNKNFKCLKFVP
IMQNLKYGVSPLHSWLRFFEFVLHAGYKMELKKWRISDPSEKKQMLERKAQIQKMFWERLSLKVDKPKQAGFGNTNTGNT
ARRAFTNYDDFSKITGFDEQIIYNMRIILICLSCQLPVDLDKFESFCLQTGELIVDRYPWLPMTPTVHKIIVHCRDIMEN
TVLPVGYFGEEASESRNKLYKSDRLHHSRKHSRLHSFADVFNRAMDTSDPIISSLNLSRRIKKQKSFPLPIEVIGMLACE
YEDNVCVEDDEFDDSSLFFLDNIEIENEINEL
>Transib1_AA#DNA/CMC-Transib 847-2937 via genewise with Transib1_Dmoj, 2 introns (1478:1568, 1729:1787) [Aedes aegypti]
MEVTRRDLAALLIREQKFQSLIDFVRQRFPKADTSNKNTRKQLRCFTLHFRNLWRKSSRSKERFFGANTVWLDGTVVLET
KERKSEKRKLKAFSELCRRSKLRRVQALTENHTTQELVTASALSVARDGSRNTGKRIEHLAQSSKSASEPTGNIPTVEEY
SPEQALCFICRNNFSRMQYQDVRMTTLEKGISLYPSYNKVLLAKQDTYPEGITVNASCAKVPLQNLIDHTIQRLIKFLNI
DMLLDDVIQVVFKWGCDGSSNHSRYKQVFLNEDSDGELKEYNDSHIFAISLVPIQVLRRRPENNDQDVIWRNELPSSVSL
CRPVKLLFRKENTDLTRAEVREMDSQIQKLVPTQVNVKGVAVDVSAKLILSMVDTKVVNDLAGTSTQQCFICLRSGKRLN
DSLGDQIFNAPDLLKCVFSPLHAQIRTMELLLNISYRLTLPKPTWRVSKSSSILKDRQVSIRKAFKERLGLRLNEPLPGG
GNSNDGNTARRFFREVDTVAEITGLDKNLLFRFSIILKVVNSNREIDVEAFEHFLSETYCLYRQLYDWYVLSPTVHKLLL
HGSDIVRHAALPLGMLSEEAQETRNKSIRRFRENHARKFNRTVNFEDVFKRLMLTSDPVISLTNRRNTGRGKDNEFPAEA
SKLIKNN
>EnSpm-13_ZM_p1#DNA/CMC-EnSpm 1741-4524 (may have more exons) [Zea mays]
MFVCLMMFVYTFFIYVLFVCLMMFIYIFFYRLSYLVLEMDDNRRRAMYDGFNSVTLGHSKEWVRVAKQFVDLAFSGGPCV
VKCPCTKCRNFKYVRKIEELEHHLCKNGFMPNYLVWRSHGEVEQNITESERIDDEEEDRMDDLVADISREYPTLASKQAT
PDEVREFYKLLHASEEKVHDDTTVTVLQVVTRFMAMKAKYNFSNNCYNNIINLIIDLIPSNHKMPKDLYQSKKIVPGLGM
KYKKIDVCEDNCMLFWKEYEAATNCLKCGKSRYPEVLKEDGATFATKVAVKQLQYMPITPRLKRLFLTPETAKLMLWHKE
GEREIQDLDIMMHPSDGDAWKALDRFDLEFARDARSVRLGLSTDGFTPYDNSSTSYSCRPVFIMPYNPPPNKCMKEGFIF
LALIIPGPKHPGKKINVFMQPLIEEFKELWVGVKAYDGHLVKFTLRAVYLWSIHNLPAYDIWSGWCVHGRLCCPICMGDT
QAYRLEHGKKVSFFDCHRRFLPSNHLFRNDTKSFRRGIKVKDGPPKRLMGEDIMIQHRALQRDAEGHEFEGYGQDHNWTH
ISFLWELPYAKVLILPHNIDLMHQEHNVAESIISMCINIKGKTKDNINARKDLANLCDRPSLEVKLNPNGKERTPRAPYC
LKLEERKEVFRWLKMLKFPDRYAANIKRTVNLDTNKLNGLKAHDYHILMERLMPVMFRGYLKPPLWKMIVELSYIYRHIC
AKHISKKLMIQFEKQIAALVCKMEKVFPPGFMNVMQHLLVHLPYEALVGGPVQFRWMYSQERELKKLRATVRNKARVEGC
IAEAFAAKEISIFSSQYLSHTNNVNAQSTRYHTEEEGLRPTLVFFLWKGKGVGASTAHYVDIRERNFTMLYLYTNMEELD
PYFEMFDSIYLAGHKPTPKELDNLRMKGMNGGPRFIEWFHEHVIISL
>EnSpm-9_ZM_p1#DNA/CMC-EnSpm 4437-6932 (may have more exons) [Zea mays]
MDRSWMKESRLDTAYKNGVEEFLAFAYRDLPQGSEILCPCINCKNRYNHSCDEVRTHLRCDGIIKGYTIWVHHGEKYDRP
SIELADVPNISANLTTSGPIRDRQDGRLDDMQELLQAAFGRAASIIGAEADDIQSGSVDVEHNATEDNMNLAEGDTLGRQ
QNIYASLLKDADARIFSSGCKYSRLSFLVHLYHLKCLHGWSQESFTGLMDLLSGIPGANLPKTYYEAKKIIRDLGLDYER
IHSCPKDCILFRGDFAKQDFCHVCESSRWKVDKKDSNASVVKPKGKRKPAKVLRYFPLIPRIQRLFSSTKTSDDMRWHDE
GRTKDGKLRHPADGDAWKDFDRRYPDFKEDARNVRLGLASDGFNPFGNKNLKHSTWPVMLVPYNLPPWICMKQTSLILSM
IIPGPNSPGNDVDVYLQPLIDELLLLWAGIDRTPDASSEKNFTLRAALLWTINDFPALAYLYGWTTSGRYACPSCGPATK
SFHLKKGKKMCYMGHRRWLPINHKYRRQRMQFDGLVETGLSPEKMSGTTVLKMLEGKEFVLGKGERTSKVGKKKGKNKKV
EDKSGQKRKRRRLGEKKELDGGCGKVEKKPEDWLKKRSIFFQLPYWEHNKLRHNLDVMHLEKNVCDNFIATLLNICHKTK
DDLNARLDLVELGIREDLHPVVDAQGKQTTPDAPFTMSKDQKEIFCSVIQNLRTPDGYASNISRCVNMKDCTLTGLKSHD
NHILLHDILPVALLSCYPSKDVMKVVVQLSNFFKKLCSKVIDVAELEQLQDSIVMTLCDMERIFLPSFFTVSVHLMVHLV
EEVKLGGPVQYRWMYPMERYVVNFNLHNDNQ
>EnSpm_CA#DNA/CMC-EnSpm 11-1109 (fragment of tp only) via tfasty with EnSpm_MT, 1 frameshift. [Cicer arietinum]
RKDETVLPPQRLTNEEIWEKVKHLPSIIGPPYDNLSGYGVFHNWTKKTIFWELPYWKTNLLPHNLDVMHIERNVFLNILY
IIMDTKGKTNDTFNARLDLADICLRKDLELQDGGGGKLKNPKENYTLKQQQRLFVCKWIKKLKLPNGYASTLSKCVDMRE
TKLFGMKSHDFHVFLQCLPPIAFKALPKPIWNTLTEFSQFFRELTSPLLKEDNIRVMEQNIPIILCKLEQIFPPSFFDSM
EHLPIHLSFEARVGGPVQYRWMYPFERLGHLSMFLINYHAILIVLISSNTFIRFLHALKDKVTNTTAVEGSICEGYLVEE
TSTFASYYYPPDVPCRRTREQRNDDAGEGSFVAQPLSILIIPDVLL
>Transib1#DNA/CMC-Transib 528-2627 [Drosophila fruit fly genus]
KNYVFVDEYLFGHAELLDIWSNNSRSEDAVRQHIFKKIGQNNLNECSISLVNKKVKSFFDYIRKHLPGCNRSLDRLKKKH
FKWLASSISIIADCKTPKLVYEKANDRLKRKLASDLFGPENNTSVPLLLHAASVSSKKGNEKDMAVVLKAAGNSDNINNI
KRKMFSSEPTQMSVDNALAFLFENGFTKSQYINLKRNTKVHGFDIYPSYPDVLNAKLKLRPNGIEYFENKAQVKLQQLLN
HTTSRILEMQYETFKANTNSIECQLIFSYGYDGSTGQSIYKQRYEEIGAVYDGSLFVTTIVPLKLVDNEQKIIWINRSPQ
SIRFCRPLKIEFIKETRELILAEKENLDTQTRNLHIYLHKINNINIFVKYVGQMTLIDGKVLNILTGCNSCQCCPICAAK
PTHLMNVNDFNSDIFDAKSQTLQFGISPLHAWIRFFEFVLKLAYRADLKTWHVKDFDKPKLVERKHFIQKQIMEKMGLNV
DKPLPNGSGNSNDGNTAKRAFSNTALLSSILNIDYDILYSFYIILITISSEYEIDSEKFKTFCKNVFLAYQNKYPWYPMS
PTVHKVLVHGHQIIDNCLVPVGCLGEHASESRNKLYKSDRRRHARKCSRLDTMTDIFNRALDTSDPLLSSIYLKERQRKN
KNKNMPQEVISLLKSPCVGSDHDDHGDCQDIDESEEDDERELQQKDHELDVIASDKEFF
>SmTRC1#DNA/CMC-EnSpm 878-2557 [Schistosoma mansoni]
MHLMTSTYLSIRDADRVLNEFRLIVPDLPTSIRSILRTCTSVQPKSISSGVYYHLGLKTNLLRYVELWLCTCDFDSLQLY
INVDGLSMSRSSSQHLWPVLGRIVAPRLSDVFMIGIYGGNTKPAQFNEISADTISEIKEMTETGLLSVRFNKYIAIKLSA
VICDAPARSDVRYTVNHNGKAGCDRCVVNGRRLDGKMTFPNGEYTLRTDDSFRNQTQYIHHKGHSLFESLSIDMILTFPL
DPMHMVYLGVTKKLVTLWIELGHKRLKNMNSCVIRTINKLISRCVESTPSDFPRKCRTLDYLSVWKASECRLFLLYLGPV
ILQNILPESLYINFKCLALSMYLLAHPKFYNRVTESVRMDLRNFLREYEWCYGCENLVYNVHSLQHLLDDVLAHGPLDSF
SAFPFESYMRQIKQSVRSGYSVAKQAAQRYAEQMSFCDRLQVDISTNDNPVIGMADSRKQVIMFRNSQIKSFHPDNVVVV
KGKPGLITDIQDSGLLRFRQFTDPQNYFTDPFPSTDIGIFKCSVVSSAYSWVSIRDVDCKCMSINCVNHLVIVPLLHTVI
>Transib-7_HM#DNA/CMC-Transib 757-2700  [Hydra magnipapillata]
MKYIDIYTYILENKLQISDHGVLKDVINGMNLVNPNPKLETLLIHMRKRWQDLKGNRICFEKKHKEWLQSEIDVFTHVPV
KQDTRGRPSIENFDDCSLRTKYRRTNSLQQGHSSNELLFAAKVTLKKENKLDELHAVKNIFDSSKKVSQQLSGNEALALL
LDTNMTKDGYQLHRNVAMRKNCELYPSYHIIKAAKLSCYPNEIEIADYFAKISMQSLVDHTAQRLCQVQNEVIETVASDT
TIFATLRHKAGFDGSTGQSVYKQTVSESGIRNIKIEESLFLTCIVPLDLSTFAGGKKTTLWRNPKPSSTLYCRPLRFQFE
NESKQVLISEEAQLKEEIRNLNCTKIILNNGKELQVKHVIEITMIDGKVHTALSEATNSSQCCSICGCSPKEMNNIDASI
VRNYQAKGLQYGLSTLHCWIRCFECFLHIGYKLPIKKWQARTAEDKAKVADTKSHIQKAFLHQMGLVVDQPKSGGSGTSN
DGNTSRRAFTDAISFANITGVNKELILKLHIILSTISSGYEINTEKFTVICTKTAKLFVKLYPWYYMPQSLHKLLIHGPA
IINRMSLPIGMMSEEAQESTNKYFKRFRERHARKASRYMANEDILKRFLCSSDPVIASLRQTCTSKKKDFPVEVLELLLA
GDNIVNL
>CryptonS-2_ALaiYr#DNA/Crypton 257-2251 via tfasty with CryptonS-1_HAra_yr, 3 frameshifts. [Albugo laibachii]
YTSTTRQHRNMSIQSLVPANTKSAMSTAVNAFKRFLASESVTSTDAYLKGGNGEFLAKNSVISYYRQVKKWLLGFFASQR
TIVDNRLLEMARTLEKHCLTRVKGGLVKKAASCTKGDLLLLMEHFYTTATTPTDYQDAALVCLMWHVFGRASDLSLVLKQ
GLSVSANNVLFLRLIRVKTSEEQGLSLYPDRETFATCPVHAIAVALLMQSAPCISLLPQLTTTNDLAEPATTASIPLVEL
LGGGCHVEAGIKQETAFVSAAARAPGVHSYVNRILRKSAKAAGVESELTSHSFRRGGAQHANGDPQLSAQWIFDRGAWNL
TATNKAFSYVFNTTSEDQNIARVLSGWNANENVPAAELCVFDTRTRAKIARVQALMFSTCSNLSSSSYNVDQRVLDHCAA
YLIRHYPRLKLLNSSAPAVKRLEECVLAAKCQVADMMTWSMKLNEVEPVAEGNGNETSNKTDLKQHEKNQATIKFQAAVI
SGLIELNKRWEERITAVESELKIRKAATPSGGESGEEAKGICEIPCVKNKRKKTATTRLSTVWYEWYTREPRLWMSEASR
QRVSNSRKTVAFMKLFLDGGFTLDENVESFKAAVMVYGERAEAGVAEFLAHRGIASRGAGSVLKHMRDAHREGALNERIV
AYKALLATEAITDPSPLKSQNILHTV
>CryptonI-1_CQ_yr#DNA/Crypton 334-1527 via genewise with CryptonI-1_RPro_yr, 1 intron (751:813) [Culex quinquefasciatus]
MSESETDSDCPMDIEAAAEAAINGLLPEKSKALYEAAYKKFQAWQAKNRVQATDEKCLLAYFSQELKDKSPPTKWSLYSM
LRTMINVKIGIDISGFMNLKSFLKRKSDGYRPKKSKILTKEQIFKFLKEAEDSVHLATKVALIIGVYGACRREEIMKLSL
DDIEDLKDSIKITIPNTKTKIMRQFIVTKGEAPGVDMLKLFRLYAEKRPAGTGHSRFFVSYRFGKCTKQAMGINTIAKLP
RIIAEHLKLPSPELYTGHCFRRSSASLLADSGVDISVLKRHGGWKSSSVAEGYVENSLQQKKSIATKILGEAAEVSEPSE
VHIATSSKNVPERQAESITVNSTLSDTPSTISFPMPSSSSAHNPVQFNNVTNCTIFF
>CryptonS-4_PS_yr#DNA/Crypton 288-2339  [Phytophthora sojae]
MSLQDLAPENTKRAQATAVNVFTAFLASENVTLEFIRATLLADASGSVLVKLLDRFAMHLAFARGRSGDLRKRNTVMSYY
RNVKNWLLEDFPQHRHIVEQRLLKMGRILERHCLKRQQGGMVTKAPACTKADLRSLIDGLYFDASSAKEYQDAALLSIMW
YALGRASDLAFIQKRNLSVGSGNVLFLRLIRAKTSEEQGLSLFPDKSSFITCPLHAIAMALAMQTFPVSSVLDLEHLSGL
NVGDEAPATEATPLTDALVHCSDDDEPANATPEATSPRRKSTPLKMQGYVNRVLKAASARQADAGVSSGLSSHSFRRGGA
QHANADASLSPQWIFDRGSWNMTATNKAFAYVFNTTNEDRKVSKVLSDWKSNDNPTIPSAATFDSATTTKIRRLGRMLFA
SSLDLGDASLIVDDQVADLLVASLIQHFPEVNERYPMSPYTSRMRMCLFPLQVSMPELLGWSVELKRQASEVREEEEKPF
TRELQLINHLNAVIAQLVEANKAQSERIAELEKRVPVGGAVASQAGSTPDTITDRTDLSLALDTPMKPTKPKVRAASKTA
AATWFEWYTKTPRIWEVCDDRQYKSQSKQIVAFMKLFLPLGFSLDPTTGEYADRVMQAGNTAQKNMHEFLQARGIKRKFG
SGLLKQLRALHRDGALDELITRYRASLALGQIADPAPETTKECF
>CryptonS-5_PR_pt#DNA/Crypton 2723-4144  [Phytophthora ramorum]
MDTVTTVTGQQKLEAVSLWKLEGWTTTEASRHLGVSRSTLLGWRAAEGKLQAGVNNATTTRPGPPSSTHGYEEDLVNMIK
LSSDIDAQMTRAAIVDDCAVKVPGFVTRTRGAQLSWLNRFIKRHKLSEFIATYDFHMQPSKKKKFKVSPPAVSDSPAEVP
PAPLKGSPKSCEAIPGSQLEVPLSPIGAHHSPLEMPSAIDKSMEPPKIISLVDSTEEAMEYDSGGEYDNAYVDPSNIVCE
TRTPSFAPGKTNIRLVVQRTDLETLECDNWLNDVVITYYIREHIPVYGRAYIMDANFFGYIFAAFKSSGRSMKAAYKECC
GVTSTFPYDSYDHVIVPINMGYHWTFAVVQNPVHAVVGLRRCIVHVDSLGISKIETVKKVVGAYFDEELKSKYADKDATA
FIMRGVHTSPKQTNTDDCGVFLLYFMKRVIEAFLQGDVLLLLDIDKICTVSRSTRFSPAMFRKEVTNLLSSGNK
>CryptonS-5_PI_yr#DNA/Crypton 264-2303  [Phytophthora infestans]
MGLDELKPGNTKRAKATAIAAFKAFVKSESVDFEYVRSCIAKDDSGKSFVSILDMFGMYLAFNEGKKGKQLARNTAMQYY
RQTKMWLFELFPTQRHIVEAKLLSMGKTLENFCMKRDGKVVSKAPPCTKADLRKMMLYLYQNATTSSDYQDAALLCMLWY
LFGRASDFSLVQKQNLTIDAADILFVRFIRLKTSEEQGLSLFPDEDFITCPVYAMALALLVQYAPCVDLLDNLPPLPVEA
SVSLSPATPLLEVLDHPDDYAALGAVAAAADGAVVTGKTPTIYSHVNRVLDRIAVAAGIEVALSSHSFRRGGAQHVNGCD
GLTHRWIFDRGAWNMSTTNKGFNYIFNTSREDHKVSKALSGYSTEAKVPLKDLKAFDAHTQEKIAAVQQYLFATCLRLER
AQYNVSHRVLDVLTAYLLLHYPRLKHLHPDGPAVKRIEECVVLAGSSRADLLVWASHLAAQNIATKTRLPEDKEDIDPTS
NRQPRQECDIIEHQRRVIDQLVLLVKRQDERMDLLEAKVGGAVQQHTSSKRQHDPEPDPVKPTKRRRTSVTYLHATWYAW
YAQEPRFLAAASKQQRSSARQLVGYLKLFLGDGFSLNPSACDYREQVLARGKQAETAVITFLRERNIMSRGSTAVRKHLH
GLHAAGELNDMITRYQRLVNAGAVQDPDRQDPLQPVAATS
>CryptonF-5_PS_yr#DNA/Crypton 129-2173 via tfasty with CryptonF-4_PS_yr, 1 frameshift. [Phytophthora sojae]
MGRKSGISIRSYAAATAASGQGQQADDSAVQMQIEASERATLQATLDTRPINTKRKYESYQTEFQSWCSEKHFCDGATVT
KGKLHLFLTEQVVGRESKKKKGTFVGGSTVCGYVNAIVDLYNQQVALKINSNVHPRSAQVKQLIKNVQAQTTETRKKNYQ
DRGVGSLLDGYHSEEQFRQICDTFFLLGDLRGRAAFLVSHFGLLRGENARDLELADMFSQVLDGEGFQTCIALVILIQHG
KTNTYGKLQHVGYIRNKDVHVCPVGAVAFYLFERFHIDLEPFPFFRTAKDWYDVKFLRGRTRTKSISYNTHKKSYESVFN
RLGLTFNKKTHINRQQGVRQLERCDVDSSQTRRHGRWGQDTMEGVYSAPLAREAMRALSGHPARSRLYYLERACVDPPQD
LQRKIFPDLETYKKKILDGDWEQNLAARGFIELLEYLRIAVLEDAAFLYELLPTTVQQHEIFGEQFQQYRSEALARANST
EHPVEMQLQVAMPLLAQQLSTQHSTVMDTISSGHRQLVNLVEHSQQQLTSFLQGEVTFRLQPVPDSSGRLHSQTTVRGGD
GVEQSADTQQQQQLTPPLSSSAVPQYSMSRQTSTVKELWVEWHEGLANRPSIEYLESTFGTKWRSSAKETKYFSRRLYVI
KYVRKLVEGGLTADVAIAKADSERGRRSIDGFSKLLRSKQVN
>Transib-20_HM#DNA/CMC-Transib 1137-3466 via tfasty with Transib-16_HM, 1 frameshift. [Hydra magnipapillata]
MFNNITRLEVFEKIKDTISSQLTSRQIVDQYISMLKNELNVSINLNDDFSRFEKALLEFVCKCRSKLSKKYFRNKSKFLS
GESFWLNNKILSLINQQPSEQSSQTVDLNVSCLNEQSFGRPCKKYEDMSYRSKRRHASILLVNHDHDKILQAAEMGLKKK
KRYSLLYVLKECLSNVDSANEIKCFIQDKNKQIVPNTPLEGLALMTAMNLSKTQYQVMRNNSIKCNANIYPTYNNILRRK
KKCYPDGIYIAENGMRGEVPLKELLYHTVHRMLQITTVKNRISQLDSLESCLGMTLYCKWGFDGASSQKQYKQKFYVQIN
NNDECNVLMSDQNLFSTCLVPLKLSYGVMTIWENQVPSSTRFCRPLRIQYIAENPLVLREEKKYFDKQIDLLEESAMIID
VEIMEPEAEKKLVIEVSFNLKLTMIDGKAVNAICDNKSAQICNICKCTPRSMNNLDKALIRSTDLQSLEFGLSSLHAWIR
CFECILHISYRLDIKEWQIRGPENIKLAAVKKKFVQREFAKIGLIVDMPLQGGSGTSNDGNTARRAFRQQAEFSRITGVK
KDLIYRLYIILSVINLNKKINIAKYETYCLETANIFVREYSWFYMPASVHKLLIHSSLTITRFMLPIGMYSEEAIEARNK
DNKNIRLQHTRKFDRKATMTDQFNYLMLSSDPILSSLNYARSKCKHKKMNLDGDAVDLLFQETEKENTNDANDDIYADEE
YNELDEDDDFDDRNEELKPININEIRNLNEHNDIIESSENENTDLPFYYYADFENTD
>Transib-13_HM#DNA/CMC-Transib 489-2717  [Hydra magnipapillata]
MFISICGFLRFLSKFFFSGVICLQNSAVFDIWLTQQKKGKNKDALINYFIQKCVADKISDECYKYLTEKARMLNNNLSAK
WEKCHRRXDDFQIKYSGWLCSETVINRQINLEIASTETQCIVELXPDEKIVSLTGRPQLKYSEKSERSKRRQAANLSMSE
HNETNLLVQAASISARKQGQVDLAVVLKETIESPSRPSKIRKLYVDDVKAPIVMSDEEALAFLLENNFSKSQYCSIRTES
KQRNANIYPPYDNILAIKSKCRPDGVLVDDKCAKVPLQMLLXHTAKRIIEMQKEVFATITGNFISTEMIFSYGFDSSSGQ
SQYKQSFLDQSASRNADSCLLATTVIPLRLLSSAGAPIWNNCFPQSTRFCRPLKLEYKSETKEVITREAADLNKQIQELE
NLRVEIEAGKIIEITFRLFLTVIDGKVLNVLTDTKSNQKCPICHATQTDFLKVTDYNSVKFHPINGNLKYGISPLHCWIR
FFEFVLHLGYKMEVKKWQIRSDEDKDAIKKKKEYIQNEFWKELSLRVDFPKAGGCGSTNDGNTSRRAFTEYDKFSKVLGV
DTELIFRMRIILICLSCQFSLNLDKFEEYCFQTGQLYQSKYPWLPMTPTVHKVIVHSKQIMQNTALPVGYFGEDAAESRN
KIYKSDRLHHARKTSRIDNLFNVFHRALDTSDPLISSLRLNTRVHQRKRLTLPPEVKELLYCEDIGETCATENLENMDGD
EDDYPEQLEEEXTFLDNELYLN
>Copia-10_PIT_p2#DNA/Crypton 4752-5330 R It appears that a Crypton element has crept in this Copia consensus. [Phytophthora infestans]
MVHVICTVLIYYLLYTQMPVSLRTSILCQHQEMLSDRYSMCSLLSISNALQTRDFITPAMLRPILARLVEVSPSVDHGHP
RYGAYTMDALQKGLQKRRKQLIYLNTKSGFKSRPKRPASIVRSRKSALLIIGRRPGQRAGTWHCIARAWVGNKFVFIDSD
TYHFFPNREELLTSFFETVDGVYSIEDIPRANL
>CryptonF-1_MC_yr#DNA/Crypton 313-2622 via genewise with CryptonF-2_TS_yr, 1 intron (469:618) [Arthroderma otae]
MDRADGSMSALDRQSNINVALFENQERTLLYTQKNRPKNTQIAYSARQEEWRAWCQRVGFADGEIVSEPKLNMFLQEEVM
YREIRPSRYKKSRTNIEGESVKQTLSEASIKAYIAALVDLWGVQVSMRTNTHASPRGALVKGLIRTRRQQESKRKREQYE
DRGLNSLQDGYTSAEFVRLIRFCWSSGYNVSGQLEPFLRTAADLLLAHTLLLRGEVRRKVQMADLFTLTLDNEGPTPCHA
MVVLIDNGKTNQDGRREYGTAVRHKNPLLCTMASIGFYFFMRWNIMGETPPNFQRRELWYDLLVIKGQSNVKPIAYETQL
QWSNRVYKGIGLGIKKKTHAGRSQGAKFAELAGVNEGQIRRAGRWNSDSLTTSYLTNIPRKFVRAMAGFQPVETGAYYLP
RTKIEPPASLKQALWPWVDEWLLWQASYTGSGSEDVQLPPESVRFDSGKVDHGDLASQGFLYLLDYLRTVILQDSVLFMQ
EFPGHPIWSHSLFARDDYLCFSQLVRDSLIDVEEPQDVQLRRTVPAIATRLQTIEQSIVQTLKVSEERNVGFLQTIDRNI
KDIVDGTVSFTVRANAPGSPLSAAATATATAASTPYATPRCMHGAIPHPSLSPSCSPHPPSSSAVAAAPHTGPPPLSMGF
SQSRTIGTVMDLWREWAEGLGGRPSVRSMEEAYGPRWRRHRPGESMMFSRRKVVVDEIVRRQRVQKKSLSVVIEELETVR
>CryptonF-1_ACap_yr#DNA/Crypton 221-2532 via genewise with CryptonF-2_TS_yr, 1 intron (350:416), 1 frameshift and 1 stopcodon.  [Ajellomyces capsulatus]
EVERQLQISKDLFSYGEKALALALQNRPKNTNKQYLPKQREWRDFCKETGFEDGEMVTERKLVWFLEEKVLCRPLQGSVY
KSKRARTDRDGNTVLQTVGKSTVKLYVAAVVDLYRFQKSRGINSSDHPRGQLVSAVLCTHETKESVRKRAQYVDRGANTL
QDGYNEKMMIHLMKFCXTGWYKNDQTSVMSHLCTELNFLMNHNMLLRGETSRTAQLPDLFTLQLSNEGPTPCWPMILITD
NGKTNQLGRLKYAAVMRHKNPLLCTISHLAFYLFYRWNIVRESLPDFRRRSLWYDIHLLCEQDPFKPLSYDTQLQWVNRM
YAAAGLLSSKKTHLGRSQGFRYAELNGVSEGQIRRAGRWNNDALTNCYLTNIPREFVRAMAGFEPQTQGNYFLPRATIPP
PEXLEAAIWPWVDVWLDRFDSYERLSQKQRQTQRREREAAEMEEVKETEQELPENEQDLAAQGFLRLLKQLHTVILQDSV
LLQRQFPDHPLWSDALFVREDYQKYTLQIVQALETAVEPQKIQIQRVVSVIADQLKNVRQEMIQSIDKWGYENQQLQQKM
AQQLADLVDGQITFSIQAVPQSSAAQNSVMNLAAIPSAFSLPSSSSTLSRDIVQRSVESEMEMRQSSSNNAESVDLTATL
LTSSRTGNGYSLSRTIQSVPDLWREWTTGLGGGPSVQSLEDQGGSWRKGSSKEQMMFCRRKIIINEIRTRVSSGMTVSAA
VESLELIRQRGKLSLNKLTELLKRQRQL
>HATw-3_HM#DNA/hAT-hATw 836-4139 via tfasty with hATw-2_HM, 1 frameshift.  [Hydra magnipapillata]
MINESIYDWYLALKDTSYDAIYCRYCLDFKVELFCCKKALAKKINRLVDTIRKLKKQRKNKKLALLLGEAFFPPVANFSD
NTVSASEIPKETILISENKMLKKENKILKRKMESMMDLQMDYFTHLKDFEDMSNNLKILISKNSLIEAELNFIKKCYCEK
EEKLNNIENKLELLKSKKESFNVRNLNKKIKYRDTQLEIKKNKINSLKNEEKKKILQLKNKITDINSILENSDINISELK
NEKIKLQKKVSNLKIILQNKTNYINDNNMKDVISLEKEVVSLYSKTNILKEENLELQKLVSLLDDDEVITFEDGRYSDDI
RETIMKLLSMNVSMNSVNEVIKVVLNKLAKKNISRLPSAAVKCRLMQEASILGQFQVAEAMLENNLINKNSKIGNCLHGD
GTQKYHKHYQNFQITTTSGKTLSFGLSEVVGKDAATVLQNFTNIVDDICDVVSNSATEKEINFAKLITSIKSTMSDLSSV
NPLFNSQLKTLREKLLPIAISNWDFLSSNVKDNMKDMSNFFCKLHLLANFASETDKVLNSFEKILLQNDFETVFAFSGKE
CGAVRLVRTTCKAFHSRGSEEAGVASWFNSFLSSRNDKSYFVPFIGNRFNILYYNAAALYYHKDSITEFLNAWPNPNNLL
KAIKEDITNLVFIAEVRALGIIDKLLTGPMWRIIESLDSILFLNPYLLRLKVRLSSLCIDASSLLFANGKIFEDTNLLHQ
DVVYTKLFECTQNDEFDSLTVQSLEIIFHAILVILERQCADQLPGGKYWNPSNSVSEAASNVPVTNKASESDFAILDLMV
RTKPNANVQTIQALTMWSQNQTLEWLNGKSDEERKQLLEYSRTKVTLMKSKYDERKEALKKDKAMHLLAKQEEKNREEIK
LQHKKVAACNDLINLNVRAWISLEEAEKTVFNIEEPLKSKVLLAQLNFYRIILGVECDKKLFCKTKVEGSKRINLSSEEL
YQNLLIVIQANLTPNKQSLSNNISNNLKPRTMRDELLKTKKKELMEKIQDARLNKLIEQQKKHSLSKFINNPSDFVGFSI
QHRVREEDAHEVSWERAQVVQIDQLNGRRTTYLVKYDNEPDEVWSFPLLIDFEKGDLILCS
>HATw-1_LB#DNA/hAT-hATw 1172-4216 With hATw-1_CCo distant outgroup to other hATw elements. [Laccaria bicolor]
MAPLASRKRQAAVANLKAQEVLNEKRAVLASETAKDDLWISLQAAKSRIEELENLLADRDTECCRLESELDKANQKLQMH
KDNSVLWQEKHERTYHELRMQRQTSKRGQQKLTQLQNQVEILKTAEKETSKQLLRGSRESHKAIALLQKQNNTLHNELSM
SMAKWTSQLEKSHAKLAKSTSDLTTLRNKASKLRKAVKCGKKQKEQSIASVKKKILDQRSVHYLMQKGVFTEETRNVVRL
LVKAGCSRNLVGEVILAVLKSAGITGVGSISRTSVSRFLHEGYFAAQIQLGYEMKKAESMTFSADGTSHRSINYNSRHVH
LIAEDYTSPEGSSKQQVTRTFGIQSSKDGSSEEAIADWENTLKKIIDLYNNSPLGKRSGGLLKFIELLIKLAGMSTDHCA
KEKKDARLLETLKAWAVDQHLGEEKMLEMTLEEVRDYFKKAEEEMIRKAGGVNKWNKLSDIKKAERKAKMIEEAVAELGK
EEFDNLSDEEKHIFRLFIWAGCGCHKDLNTIRGGYLAVAAWWIENGLEEERPVLLANRDNDPVVQERATALEKGDTLTPA
QERAFHKSTRGAIKTAEIAGAIFNNKDDKRGHHDIFRYWWWEHVGVPFTFPDTSNNRFQSYCNAAAALILYGDEFKDFLE
SLRINKQNPTLNHMELNLWKALHCTSTVTELAVLAIYAEAVSYPYMKAIRTSDAQKKNMLDLGPFHSRVYDHMQKIIANP
DILIGKDLDISESYKTATLDGEKWQNPAVVKKIFDLIPTLPHFHNLLIAFFKGAAQTWERFTSEFAPGGLIDEATAEERE
LAHMPATNDENEGLLGSFRRLMHYQPQLTLLSCNALIMFFRNNTQAFMETKFTEEDYQYIHKLGREANGEEKKRRNELTD
FRDQRQAKKTARKEVREQNAKATAERIAQLELVFDKEKVPGLKGTSLKDQLRLFKSAGAPNLKQGPMPTKVADIRKALVD
AIDLHTNGAWKLIQDEESEGENINLSEEEEDEEDEEDEEDEEEGWEDIEGYESE
>HATx-4_SM#DNA/hAT-hATx 409-2338 via tfasty with hATx-2_SM, 3 frameshifts and 1 stopcodon. [Schmidtea mediterranea]
MSKSGVWKHFMKSKNDEEAQCMHCPKQLACKGSNTSGLLRHLKRIHSINEECENTSTNIKRSKLSDPSTSNTSSIIKFLK
NANLNETVVKLACEDGIPFKTITKSSFIRNSMKNLNFNLPKNQTSVMNLVYKYYILxSEKMVFKLKAQITQAITAGERFS
LSLDEWSSVGNKRYLGIVLHINRNKIDSVSLGLVRMTGYCNAERILDMINLKLKTFGISFTNHIVAVTTDGASVMKKLGS
TCFAENMLCLNHAIHLAVVDVFYKVESNSKCNKGKTVSSDSDDFEDDDDGYIAEDDDIDEDDNDDRVSIEDDTDVNDDDV
NSIKIVLSRKDVGDAIKHTRNIIKYFRKSPTKNEILQKYVKEEFSREYCLLLDVKTRWNSLVLMIERFLKLKNCVKKSLI
DLNLTNIWKEEHISILETTFNILKPIKVAVEALSRKDTNILTADAILNFLLKKLKNMDTEIGSLMFNTMLTRVEERRNML
SFSLAAYLHTSEIPKNNDFLSYSSKQAMIAYAGKLMDRLYPSENCIENVDDVAIVTDIKKIETIEDELQIAIKDATTKAT
NDKKNHDKTKKLKTEISVLESTGQRTENLNLLYNSLLTIKPTSTDCERVFSVAGNFVSKTRSRLSDNSIDAITFLKSHFL
HEK
>34914880_Osa#DNA/hAT-Tag1 gi|34914880|ref|NP_918787.1| B1096D03.1  (identical except for at termini with 50933413 and 20160539) [Oryza sativa]
MPLRRGAPEIVGAAADATRQVTLIQKFVVENNTDAVELPASVNNISSRITPLLVTLSTECHPVKGCRCAGTIAPTPSSKD
AAIVIATVWACLTETPPAGDAFTLVAVSSVTIDVYSSQSSSTAARGGDRRRLLLRAGVQPAAAALKAAEQRRKSDEEVRQ
CNVSEALKQQHQSAASVSVEAGPKQAGINSDDPAWAHCFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGIKGFNTTKC
QKVPSPVQQEMFDLLTKKTSEKEQKNKEKEVARAEVDIENSDCESGSEGSDHGNNVLVVKPKETTGSSSSRSVAGGHTID
KYYKPPSIEESASMTQRVIKLSNKVQTTLTTQKREERRNRTCEYICQWFYEASIPHNTVTLPSFAHMLEAIGQFGRSLKG
PSPYEMSGSFLQKRKEKVMDGFKEHKESWELTGCSIMTDAWTDRKGRGVMNLVVHSAHGVLFLDSVECSGDRKDGKYIFE
LVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKRPSIFWNGCAAHCLDLMLEDIGKLGPVEETIANARQVTVFLYAHT
RVLDLMRKFLNRDLVRSGVTRFATAYLNLKSLLDNKKELVRLFKSNEMEQLGYLKQAKGKKASKVIISETFWKNVDIAVN
YFEPLANVLRRMDSDVPSMGFFHGLMLEAKKEISQRFDNDKSRFIEVWDIIDKRWDNKLKTLLHLAGYYLNPYYYYPNKQ
EIESDGSFRAGVISCIDKLVDDEDIQDKIIEELNLYQDQHGSFGHEIAVRQRKNKNFNPAKWWLNHGTSTPNLRKLAARI
LSLTCSSLACERNWSVFEQVDTKKRNRLLHERMRDLVFVKFNSKLRNKRENKGRDPIEKEVDDVVADGDNEFITGVVPSS
SEMDQQCAKESQQHTTPQAPAPAKKKRPVHAKKRKVRSL
>hATx-5_SM#DNA/hAT-hATx 557-2410 [Schmidtea mediterranea]
MSDVWKYYKKDGNDHGICNECFSKLKTKGGSTKGLWTHLKTTHPDVLKNSQATSTKRKNYSDLEPTKKSKSSHSIDSYFY
KETLGEILAKFAAKDGFSIHAILNSEGIREYIRLKKMEMPNSLSTVASLIYEFYEHKKGETIQKLKKRLEIGGKYSISID
EWSDCQQRKYLNITLHEPEEDIVLGLKLVEGSCNAERTTELVTEFLDEFKLDLENDIVASSNDGAAVMVKYGKLNKNISQ
VCYNHAIHNSVVKVFYENKSTQVDSESGQEIGVVEDEDDTEYEESKGRDAFFNDLDSEPDYTEIQSISEVLNQTRKIVKF
FKYSSVRKSIFQKHVLEQEGKNLNLILDCKTRWKSTDQMVARFIKLEKPINDTLIEIGREILPKEHFSILTVISQILAPA
AEVINELSKNNSNLLTSEGSIAYLFETLNENPHPLAAELVSELKDKLLARRNKKVVSLLYFLHNGTYAKRNKFLEYSSKE
EVKSFAEQLHQKFSLNNKEKETSSSGSGSEDEAQPDKIMQRENKLQESINKVLNAKKVLNKVSIKNEMSQYECSGAKSAN
LEKLYESLLTIKSTSTASERIFSISGFICSKIRNRMSTRMLNALVFLRYYFLKKIER
>HATm-4_HR#DNA/hAT-hATm 552-2804 [Helobdella robusta]
MAKSTVTRSNNNIWLIGFPKETISGARLPSGQDVMKNFVFYHRVQKLNINKAAQQVHEQLLPFWVKSRLPVRQKPHIIQK
IKDLYADQVRLMKHRKRNNSTDQMNQKQYINKLSQLFDISHANSEQLIKNDKDRQFLKLQQQSRTGSIGSVDKKLMVKKK
RVAKRQKRFIRNVDNAAKDAVSKIVYRGRSGLLSTAESAADQQLGSATHSTTSSVCHDSNEDVKSDEEFLVQSACSSKTN
STTQRRHRRDIISLKVAAVLDRTNTSIRKSSMILASAFNEAGVPISESIFSKSTMHRHRQRRRQQAAALIKENYVPSKSI
VHWDGKLLIDVTGVVNVDRLPVLLSSLVDGTTKLLGVSKLASCSGRAVADAVHEHIKSWKCESMVIGMCFDTTASNTGKI
NGACTLLEKAMGRNLLWMACRHHIFEVLLADVFNVCLGPSTGPEILFFKRFREKLTEMNHTPEARSTPLIIVSDAIKAFI
KCQLEVRHSRDDYLEFLLLAAQIVGLQVVVAIRKPGALHMARWMARAIYALKVELLFTVNKTIFNLTARELQGIQHLNRF
IICVYLQSWFSCRLTADAPVNDILLIQRLHDYDDAVLGSTGLKMMLRHSWYMSPELATLALFSSLLSDKEKTDLVRTIQQ
DRGPHLMKILPQSIDDLRASKTFFETANIDASFLDVLVENWSDTPSFQVTAVFVRNLVCINDSAERGVALVQHFNETNTK
DAEQKQFLLQVVEQHRKNFAEYNRELLAKI
>hAT-N5_Crp#DNA/hAT-Charlie 312-2121 via tfasty with Chaplin6_FR_tp, 3 frameshifts and 1 stopcodon. [Crocodylidae]
MDKYLKRQDSDASTSTCTDEAEHEHKEVKRVSQHYCESYLHYGFSFTGEPTCPLPLCLVCGEKLSNHAMVPSKLKQHLTT
KHPSLANKDKDFFQHLKDQNEKQVRMVKDSVTVSDKALEASYLVTELVAKTKKPHTIAESLILPACKEIGVMLGSDAVNE
IAKVPLSDNMISCRTDDMSADIETVVQEKIKSSGKFALQLDESTDISGHAQLLANIRYIDGDGIKCIFLFCKQLPGNTTG
EEIFRVTMAYLEEGELEWKNCLSVCTDGAASMTGKVKGFLNKVKQENPNVLVTHCFLHREALVAKTLPEELSSVLDGAIK
IVNLIKARPLKSCLFSLLCEDMGAEHQSLLLHMEVRWLSRGKVLSCLYELREEVKIFLTSEQSAYADLIADVAWCAKLAY
LGDIFRHLNDLNRKMQGRNENLLSSTDKLHGFRSKLALWRENVAKGKLEMFPLANSADPTSSVLANVISQHLKSLEEKFS
FYFPSVCIEDFDWIRDPWSSSAMESTKNISIMAQEQLTELRTDRNFKIKFGDMLLDSFWLTLQTNIQYFRTWVSVVAVHT
VFKPDLHQTKRASEMVEQELxVALSSSARIKQLCTSRQAQISQ
>hAT-42_SM#DNA/hAT-Charlie 608-2467  [Schmidtea mediterranea]
MTQPAKKTKTYHYNTEWEQEFFFIMMKDKCVCLICNSNVALPKRANVERHFRTVHKHYEIDFPLDSEVRKDKVKQLKSQL
GAQQTFFTKFNSKSKTATIASFKVVNILMKHKKPFGDGEIWKQAFVEAGEVLFKDFKNKSEILDCINNMSLTRNTSMQRM
VDISKNLEDILRQDIQKCRFFSLQFDESTDFTDTAQLCIFIRMVFDDMSTREELLTILPMKGQTRGQDIYNLFKSFISRT
HFPIHKLVSITTDGAPSMIGKHVGFVTLCKNDEEIPSFHSYHCIIHQQTLCSKVLNSNYVMNIAFKIVNSIRARSLQRRQ
FRTLLEQCEIENTELLLHTDVRWLSRAAFLKRFRDLLPEIKQFLTGREELYPELEDKSWLINLAFLCDITEHLNKLNLQL
QGRHKSILDMIIAVKTFKEKLSLFVRQLERGDLKHFKNMEEESKNAPGILYDKYTNQITTLLNEFNTRFADLSKIANIAT
FMSFPFNDFIDTEEIATQINEFLDSDSACLEDEIIALKSDIYLKSRATTEDNFWNLISEEKYPILRRVVGYMSAFFGSTY
LCESAFSSMNGIKTKHRSCLTDDHLASCLRIAISSYDPKYEELADKMQCHVSGASSSSK
>hAT-N6_Crp#DNA/hAT-Charlie 1-1889 via tfasty with Charlie3_tp, 5 frameshifts and 2 stopcodons. [Crocodylidae]
MIKQTSMDCFLGKSASAKRGSEVLNDREENCAEDVQCQENAKKLKKATFNRKYDSSYIKYGFIPLGDSQAPKLLCVIRAE
TLSNEAMKPSKLLRHLSPNTLLSKEHLxIFFEQKKGEFEGQKQLLRNATYTNAAALRALFLVAHRIAKAKKPFTIGEELI
LPAAKDTCHELFGEMAACKVGQVPLSDNTVARRIDEIAEDIEEQLLERIKGSPWFLIQVDESTDIENKAMLLVYVCYVSE
DDVHEDLLCALSLPNNTTGAEIFRVLDDYISGRLNWTFCVGLCTDGAATMTGRLSGFTTRVKVAPECESTHCVIHCEMLA
SxRLSPELHDVLSDVIRIVSHIKAHALNSRLFASLCEDMGAEHKQLLLHTEVHWLLRGKALTRVFELREQLQRFLLRQKK
SPLAVHFNDKNWLAKLTYLSNIFTVLNKLNLSMQGRMASVFKMADKITAFKTKLETWGKCVDRGVFDMFQNFVDFLGEAV
GFPQLISEHLKSLSDAFEQYFPSSRDPRIRKEWIRDPFLNRPQVVLPPLQEDQLIELTCTGGLKTLFNATSSLSFWIKIK
GEYPELSTLALKTLLPFPSTYLCEVGFSAMTATKTRLERLDVRNTLRVSLSTIMPRYYLLVSGKQAQGSH
>HATm-3_HR#DNA/hAT-hATm 229-2493 [Helobdella robusta]
MAESTRKKQDIYLLGQPLKTAILGNKLPAKGEVMRRFLYIHLSEKMTVRDSETAVIREVLPIWQRARIPTTQEYNAIKKL
DDMFKLWQGLKKHSKRNSDAQRRQEQAFVHSRKDLFDIAHANAIELIQIQEDRKFLLAQREPGRRGYMSGVDKNLALKEA
RSYERKRRQENYKLKSVQAQEEITAGACSAEIEHSSSDSSSECESEEDSIAKRVQVKRSRKSFSMSRPHCAVSRETAAAL
DRTKTSDRKATYIISGVAKHLGLNAGNLAINRSSIRRARHKHRQELALEIRRNFSPDVPLAVHWDGKLLLDLTGNQKVDR
LPIVVAGAGVEKLLSVPKLESGTGERQATAVHECLLEWNLEESVKALVFDTTASNTGKKNGACTLLQQKLGRNVLHIACR
HHISEIILEHAFSACMSSNTSGPEIALFLRFRNEFNSINQADYHTIMDDESMNSKVEQHKEGIVSFCLTQLEQFQPRCDY
RELLELSLILLGETPPRGVRVLQPGALHRARWMARLIYAFKLYMYRHQFLLTRVEEKGICRFIVFGICVYLRSWFTAPDL
LSAARHDLQLVKRIQQFRDVDREVSVAAANALSRHLWYVSEELVGAAFFDDQISHEEKVLMVDALSVESKTTNDFTKRVQ
MNINDISDEMSVKDFVSSNTMQFFAILGLPHSFLNKRPSEWREDEQYKKAFEVVSGIKPVNDFAERGVALMQDFNRAIVS
SEEQKQYLLQVVEYHRTQYPNPKKETLVGGNTSP
>hAT-81_HM_tp#DNA/hAT-hATm 603-2858 [Hydra magnipapillata]
MANACRGTSKPTTRQETELWLIGQMSEILSFTKLPSKKEVMALFFYYKEAAKQTVREASHSTTNDVIEVWAKARIPTRLK
KHVVEKVECMFHEYDKLKKNKENKAKRSESLLKKEEEWKDGLESLFDIAHADAMKMISIQEDREFLLAQREAGRRGKMGS
VDKALAKRERDVHNKEENFKRRKEREEQDRVAREEKAILQTSESEQESGNDDEAFGEPSSSTTSKRAKRIRGTQKILNDK
LAVCLDMAKVSDRNAALVLTPALQHLGYDPADFNINRSSIRRERMKRRQRIAENLKAEFKPTVPLTIHWDGKLLEDISST
EIVDRLPILVSGLGVDQLLCVPKLPSGTGEASATAVYDATVAWGITDKVKCVCFDTTAVNSGPRNGACILLEQKLDKNLL
WFACRHHILEIVLEATVTLSLGPSKGPDIMIFKRFKSSWEFIDQSKFQTSSSNDTVSSAVSSVAIEIIAFADNQLQQFQP
RDDYRELLELTIMFLGGIPSRGCSFKAPAGLHRARWMAKAIYSLKIWMLRSQFKMTKKEENGIADVCLFTVTLYVKAWFR
APSAPSSPRVDLELIKEIDKYKAQNRAVSEIAMKKFLGHLWYLSEELIALAFFDDEVSDDTKRLMVSALQAPGAEHPLKR
ITVDPSLVSSKNLQDFVTESSHRFFTITGLPSTFLNKDVKLWSADADYQLAKNIVSSMRVVNDIAERGVALMDEYNKLHT
NDEEQKQFLLLIVKKYRQRFPDRAKNTLAMD
>37532706_Osa#DNA/hAT-Tag1 gi|37532706|ref|NP_920655.1| putative transposable element [Oryza sativa]
MVSDEWKNSEWREEEDHAFTYDCLTNRRWWRDMELVLTAVKPIYIVLRFADQQRNATISGFLPKMISVLGDIRANLCQKQ
NLRDRVLQVVNKRLRYLLNETLITAAAALDPRVLYTSNMGRQRNSRFAVTLALKKIARSSLEASNAIEQFNFIAKRGLFG
GDEARRSALNGRMSAAEWWDSYGGEHKELQNLARRLVSQCLSSSGCERNWSTFALVHTKVRNRLGYEKIHKLVYVHYNLK
LRIQHFQNDMQLLDGNPIMDWLCNSRSESVPILDEFDDNEPELSSPRKARLEDVEEDSAEDYVSDSPRGSPTYAESGDSS
SSDGEANDDVDAVVDVGSEEDHGEPTARGAPVGEQPAPLHPKSTRKRKVSVKVLLDKTSKKKSDLSLQGLWIDVLDQNLS
ICPSSILPIGSYAYINLYCQLSTCFWITNKNPGRCPIASQKTDKISRTNTRKYGLYALTSGVQRAGRCSLAELPGLLQYE
EAVNQQRRQQAHAGNETVNLIKSKKIVHVMPFI
>hAT-14_SBi_tp#DNA/hAT-Tag1 985-3311 via genewise with HAT-7_VV_tp, 2 introns (2774:2863, 3069:3160) and 2 frameshifts [Sorghum bicolor]
SSNTPTPVSTEDSNQNSTPSQEAATETKTRRKTDPAWGYCTQIVEGGKKKIKCMYCNMTFQGGGIHRFKEHLAKWPGNVA
ACKKVDPETEHTMYKNIEDWNERKKKQxEEYVEGHPYGPEPGEEDVVEVSNTNAAASNKGKKRPAxTPSLGKYFKPRTGP
GDQPTIRSVLQGEAVKEKTDMCVARWFLDASIPFNATNSVFYQPMFDVVxAFGSGYKAPSMRQLRGPYLAKCVEETRKFV
DGFRKIWRETGCTIMADGWTDRKRRTLINFLVYCPKGTVFLKSVDATDSSKTGDFLFRLFKDVVNHVGPQNVVHFVTDNA
SNMVAAGRMLQDEFPSIYWSPCAAHCVNLILSDFGKEDLVKSTVAHASIITKYVYNHCYPLYLMRKFTKGHEILRPAQTR
FATNFIALQSIYKHKTELQAMVVSNEWTNCAYYKEPQAKKFTKAVLDQKFWKDCAVVCQLSEPIVRVLRIVDSDEXPAMG
YLFGAFHSAREEIVKRFQRKKELVKPFLEYMDARWDKHFDKNLHAAGFWFNPNNQYDXLRDKYNFTTSGVLDVIEKYAGK
DIALRSALTKEMKIFRNGEGDFGRxTAKNDRHLMLADEWWQTYGCSAPNLQKLALRVLSQTCSASGCERSWSYFEHVHSK
KRNRLEHQRLNDIVYVHCNLRLQQRSKSSTRNYDPIMFEEIGNGNEAWILEDNPPCLNSEELEAFRTKLSELSIQ
>hAT-13_AMi_tp#DNA/hAT-Tag1 532-3084 via genewise with hAT-1_Crp_tp, 1 intron (764:1282)[Crocodylidae]
NSVWHHYSEVQATEGRKKVGRCKYCGQEYANNATRMKKHLITCRNCPERVQAIYRKLIQQSGGTTSSEKSLLQESYVSLG
EEEAGSSLSRSLSPDMRSTMSSCSRQSSFLSSFVDKMSKEDQEKADETLARAIFASGTPLSITENQYWKEHYKLIRPSYK
LPSRYRLSHSLLDREYDRVQTMVIQRIGQAESLTLMSDGWTDIQGNPLLNIMLATPEPIFLKAIATKSSRHTGEYIAKLL
SEEIESAGPSRVQALVTDNASNMKAAWQILKAKYPHLIVFGCLAHGLNLLAKDIVSVNTMKTILANCKAIVKVFNNHHVA
NQTLKKLQKEKQGKESALLLPGETRWGSATKCLHSLLHTKNCLQCASIDDTVSQIIPVNIRKQILDNDVFWVRVQGAFNL
LLPVSVAIKKLEGDTPSLSNIPEIFRQLNENLIELLPSSPLSKKEVVVKQMFTKRSEFCSHPVHLAANLLDPQHRGQHLS
EDELSTALNTIMEVAKNVPNIDEIAVMTDIAEYRAKEKLWSKDIIWRAAENMSPLTWWKGYCNTRLLSRIALRILSIPPT
AASCERNWKAFSSIKTKKRNRLTNECTAKLVSISQNLLLLENQSEAQLVKKMQCDDKLPLPIDSLVKPSFSERECGSSSS
ESDLPQSDSEMELISSASDSTDSDSETGGAAMTSVEES
>HAT-17_Mad_tp#DNA/hAT-Tag1 930-4123 via genewise with VIHAT1_tp, 3 introns (1681:1766, 2689:2769, 2904:2980) [Malus x domestica]
MASSSRPSGASVPGGLDAAWKYAHPIEGNKHGTICTFCESTFQSGGITRLKYHLAGFDPHKSVKKCKEVPPDIKKEVIAW
IKDKESSKQHKKSVEENIRSTARGGYMGNKSSNPVDDDDDDEDGYAYPPDMHPAEKEDYLAAIRASKEEERFRQXGVYGM
GSKRFARGASGSSQPQYRRTQSLRDPLRSPPVPMPHKNTRAKQRTIKGMIRNSAEVLGRYCSKFFILENVAPQKASSPHF
KNMIAAAQQAGQGVATPSPYEIKHKYLDMEHTDMQAYVEKVKEDWGVYGCTIMSDGWTGPTRLSIINFMVYSNGKTXFLK
SVDASNKTKDAKYIAKLLKDVIKEVGPSNVVHIVTDNGSAFVKAGEIMMERYPIYWTPCAAHCIDLIFEDIGKQESVANV
INKARKLTNYIYNHGWLLAQMRIFCQGDLVRPGATRFATNYIAINSILNKKAGLRQLFTSEEWYNSRFSESEEGKRIESR
VLDHRFWDAMEGVRSIYEPLYSILRIVDTEVVPTMPILYDMFHVMKEKISKLKGKKWILKIIDHRWDVTLSRPLHQAAHY
LNPRYQYETGVGHNKELLSGLQRVFERLNPTGDRGLQAFGAEVINFRDCRKTFRTEMAVKSRKSIPPAEWWNLHGDSAPN
LQKIAMRILSQTASSSACERNWSTFALIHTKQRNRLAYTRLEKIVFCYYNMKLKLRDEEAEMNKVAENDYIDLLDIAGQP
SDDDNNPIQQWIMTAHLDDEQGNPDAVIAQHAAQEGVDVDRVISEDVRSGDTSSFERDMLGTRQGQRRPLRDDASTSRKE
SSSNSSDNDGGSNAGSGGNEEGRQYSPFTIEADFTHATQDEDHGCREAGPGIGAIGKQYSGKRSQPINPSEDDMAISFGS
MSIGTRPSTNSNESYDGYGYVMSDYSGTSYGAQDDETDYGPTSWVNPNYPMYGRTVGSSRETYVHHVQTWLTNCSGYMTW
YDYCMNLDGCSSLFEPHRSSSFM
>SHATAG_MT_tp#DNA/hAT-Tag1 813-2883 via tfasty with TAG1_tp, 2 frameshifts and 1 stopcodon. [Medicago truncatula]
MASSEAPTQPSAEASTQESQTQRNVRAKTDIAWGHAKIVLDGDKEKPQCIYCNKVMKGGGINRLKLHLAGETGQVEACSQ
APEEVRFKMKQNREEQTQREQPRSVVVASQKGTNNGSFDNYFLPRTTPGSQPTIKSVLQTKEVVEKCDLALAKWFIAASI
PFNAANSPYFQSAVDALCCMGAGYKAPSIHDLRGPLLNKWVDETKKKIEKYREIWKNTGCTLMADGWTDGVRRTLINFLV
YCPKGTVFIKSVDASGASKTGEMLFKLFKEVVLYIGSENVVQIVTDNAANYVAAGRLLIEKEFPGLYWTPCAAHCINLMF
QDIGKLPEVKEAVSHATNVTKYIYNHCYPLYLMRKFTHGREILRPAPTRFATNFIALQSILSQKNALRAMVTSQEWTTSA
YAKEAKAKQFVEQVLNTNFWTACADIVKLTEPLVCVLRLVDSEDKPAMGFLYRNMYKAREEMVKRFQRNKTKVEPYLKII
DDRWDSQLRKNLHAAGYWLNPSCRFSPEFEKHKSTTSGLIDVIEKYARNNHELRAKLNTETSIFRNSEGDFGRKSAVECS
KFTISRYLTFHCIIYTYDDPFTNILPFIVSYKLTVILYxLMKFCNFIDEWWELYGCQAPHLQKLAIRVLSQTCSSSGCER
NWSVFEHIHSKKRNRLEHQRLNDLVFVRYNLMLENRYVFLLYFSYINPLIK
>hAT-19_Mad_tp#DNA/hAT-Tag1 948-3272 via genewise with hAT-9_SBi_tp, 2 introns (2093:2166, 2584:2674) [Malus x domestica]
MNHPNNHANDIANPDDNANPDEIVENXHTPLWKYVKKLEKVGKRGGGNAEFECNYCQKTYKGSYSRVRFHLLKMAGNGVA
PCSKVTDENLAEMKKLIRECEYKLKSSAPKNVSLPNTGSFCYDxPEANLDPKKRKGTSGPLSKAFNKEARDQCDAEVARM
FYTGGLSFNLARNPHYRNSYVRASTLPGYVPPGYNALRTTLLQQEKSRIERCLQPIKRTWSTKGVSLCSDGWTDAQRRPL
INIMATCESGPMFLRAINCEGEYKDKHCIANFLTEAIKEIGHENVVQVITDNAPVCRAAGLLIEAHYPHIFWTPCVVHTL
NLALKSICSPKQTDVSYDDCNWISTIASDVWSIxFFIMNHSMRLSMFNEHCKLKLLSIAETRFASTLVMLRRFKEVKEGL
QQMVISPNWALYKEDDLVKAMTVKQKILDEYFWEKIDYILFFTAPIYEVIRMADTDKPCLHLVYEWWDAMIEKVKAAIYR
NERKALHEKNSFFDAVYRILLERWTKSSTPLHCLAHSLNPRYYSSEWLQEDPSRVAPHRDVELTTERKKCFERYFSNEEI
RRSINVEYASFSMCLNDFGAIDSMNDRFHLEPVMWWIVHGASTPSLQSIALKLLGQPCSSSCCERNWSTYSFIHSLRRNK
ITPQRAEDLVFVHNNLRLLSRNSSTYKEGITQLWDVGGDGFENLGEESVGMLDIANLSLDEPSLETTLITGGDIMNVEVE
>hAT-12_SBi_tp#DNA/hAT-Tag1 761-3269 via genewise with 34914880_Osa, 2 introns (2513:2623, 2743:2852), 1 frameshift [Sorghum bicolor]
KVAEPSDPAWKHCTMPDVTKKXSLKCNYCSNVYNGGITRIKYHLGKVPGYGVAKCTKVPSDIQKEMVQLLSKKLDIKQKK
KQDKEDERAEVDLSHSEGEEYSDGDGNSVIVLKKASTKCGSSGGPMDKYCKLTLEEVIAARKGKSVDNKVQSKLSTEKRE
EKRDRACEYICQFFYEAGIPHNTVTLPSFDLMLEAIGDFGRNLRGPSPYEMSGKFLQKRKRKVQEGLKSHQESWELHGCS
VMTDAWTDKRGRGVMNLVVHSAYGVCFLDSVDCSAVKKDGRYIFELVDRCIEEIGVQNVVQVVTDNARPNEAAASLLKAK
HPSIFWTGCAAHTIDLMLEDIGKMPQVAATITKAKCLTVFLYAHTRVLDLMRKYLSRDLVRCGVTRFATAYLNLKSLLEN
KKQLQRLFREDELNELGYLKSVKGKKAHKIVTSESFWKGVQTAVNFFEPLAVVLRRMDSDVPAMGFLYGYLQEAKNEISR
RFNNDRKKYEEVFQYIDKRWDSKLKTPLHRAGYYLNPFYYYQNKKAIEDNESFRDGVITCITKLVPDEDTQDKIIEELQR
FQDAEGSFGKDIAKRQCKNIHFDPAKWWLNHGSSAPNLRKLAARILSLTCSSSACERCWSSFEQVHTKRRNRLLHDRMRD
LVYIKFNCRLRQKKDNKDKDPLEKHVLDVLEDEDNEWITGIEPTEEDPLQEGETGASSQGVAPPPQREETRRGGNRNKKR
KRLIPTSFEDEELSAPSSDGEEDTEMPSYLSSELGSDSLSHSE
>HAT-4_Mad_tp#DNA/hAT-Tag1 1860-5055 via genewise with VIHAT1_tp, 3 introns (3472:3557, 3689:3755, 3832:3914) and 1 frameshift [Malus x domestica]
MSSGVTKRDPAWEHGDPIDGNKHGTICKYCGRVMKSGGVTRLKYHLSGLDPANNVQRCDNVPPEVKAFITTLLKNKKQQK
EKITHGMENIRAGLRGEVIGQAVDSDDDDDEDECDDDMGPEERRSLKQALRASKQSAWEREHLHKIPNRAQGSGTSGGAQ
MRRGGSLRESQPTPPIAPSLYKSSKARQKSVWSYFTGGNVKEGMGRLISKFFIYENVPAEKASSHHFKNMVVGCQQAGVG
VQPPTPYEIRNKYLDMEYKDIGEYVNKLRSKWETNGCTIMCDGWTGPTRLSIINFMVYSKGKTIFLKSVDASDHIKNYKY
IYKLLRDVIMEVGEHNVVQVVTDNGSAFVKAGKKLMKHHNVFWTSCAAHCIDLMFEAMGKRENVATVVKRARTITNYIYN
HGWLLAKMREFCKGEIIRPATTRFATNYIALDSLLKKKAGLKQLFTSDDWANHNFSRSNAGRMVESIVLDHAFWTQSEHV
CQVFEPLYKVLRIVDTEVYPTMGAIYELMRVVKDELERKHGARWVIKIIEDRWYKTLYHDLHAAAYYLNPRYQYRPGVGD
DGTLIRAVHNVYSKLDPASPAVGQFGNELTWFKDARRTFGEPTSVAARTKMSPTEWWIMYGTDAPTVRKLAIKVLSQTAS
SSACERNWSTFALIHTKQRNRLAHSRLEKLVYCYYNMKLQIRDKEAEIDHVDRGDPLDVFDIVGEDDDTEGNQLYQWIRP
LHLDDDEGNPAPRVAEEARNEGINVERVLEEEVGSSSADSLEELLRPRPRNTGIPPSSNPTQPQHRADTNDSSSTRSGDS
PTTGGGNDEGYSGAGGSGGGYGNYVGHHLPDXMSPFTGEANFTHATQDDDHGSRRAGPGIGAIGKDYTRRERGKGILSSQ
EDDSLSITSDSVGVGSSNYGYTHNQPFPYPSYPIPVGMESSDSWKQSETQSSNDFAYGQRQPISDPYGWHVNNYMQNYFG
DLSFDNYSSQYTHSTHRDDEDSEKFEPHRNSMWY
>hAT-2_STu_tp#DNA/hAT-Tag1 635-3185 via genewise with HAT-7_VV_tp, 3 introns (1667:1754, 2460:2538, 2658:2738) [Solanum tuberosum]
MASDASKKRDIGWNYGTQGSTKDSVNCNFCGSTFNGGITRHKQHLVGGYKNVKQCQLVRXIREEVRAYMQNKIANNPKFQ
VRQPEEYVDIDDVDDMDEYAEMMPPSKTPKISSSGGASSTARNVTKGPMNLYFPQKSTQKGGFEKGGGIDETKKILRERA
VSAFAIWMYDAGLPFNCVNYKSFDKFIETVGQHGPGMKPPTFHEVRVTHLKKEVEKVEKIVDEHKVQWTKFGCSIMMDKW
TARNGKMIINILVNSPIGSVFLGSVDASNESTDSTKMYKLFESTIERIGSENVVQIVTDNASENVKAGSMMMGAYPHIYW
TPCAAHCINLMFGDIFKVKPYASVFKKAIRIHSYISQRPLLLNLMRKFTKERNLVKPAKTRFATAFLTLRAMYIQRKNLR
TLVLSTEWTSSKFAKETLGKEVANLIISAHFWNDVVRALTVCGPLTKVLRLVDGEKKPPMGYIYEAMDRAKETIARGFRG
VKKQYEKVFEIIDARWSDQLHRPLHAAGHVLNPGLYYKAQEEGTLLQSLWTEYYACVEKMIPDTAIQDLLVAELPRYKMA
DGLFGCGPAKRARDTRSPVEWWSLFGSETPNLQKFAMKVLSLTCSSSGCERNWSVFEHIHSKKRNRLALSRLNDLVYIKY
NRTLKRRYDARDLIDPIRLDNIDDSNEWLVGCPEDQEDELVYEDDDLTWGSVATAIGADESIYHLRGLSSRSRALDKGKG
VETTSTSSTSSRTRTLIDEDYEEEEDEEQYNDVEDVDLQELDSFEEE
>hAT-5_GM_tp#DNA/hAT-Tag1 553-3228 via genewise with HAT-7_VV_tp, 2 introns (2327:2426, 2546:2658) [Glycine max]
MAEPSSNAATRKNRTDPGWKYCHPLVEGDTNTIVCNYCGKITKGGITRAKEHLVGKSGNVASCKKTPPNVVEELKGYMAN
KKSGTTYSSTGSGNVPNIRDFEFGEPIGCDESEDEFXDSCNATALAAKTKCETKKGPMDRFCKNPENAINRRKMEMLRQM
NIRESMDKNExLKVHQYIARFWYQAGLSFNLIKLKSFENMVAAIGQYGPHLPIPSYHDIRVPLLKKEVEYTENLMKGHRE
QWVKYGCTIMSDAWTDRKQRCIINFLVNSQAGTMFLKSVDGSDFVKTGEKLFELLDAIVEEVGEENVVQVVTDNGSNYVL
AGKLLEDKRKHIYWTPCAAHCIDLMLEDIGKLPLIRKTIRRAINLVGFIYAHSSTLSLLRNCTNKRELVRHAITRFATSY
LTLERLHKEKANIRKMFISDEWILNKLSKEPKGKEAAKVVLMPSFWNSVVYTLKVMAPLVKVLRLVDGERKPAMGYIYEA
MDKAKETIIKSFNNNESKYKDVFAIIDKRWNCQLHRPLHAAAHFLNPEFFYDNTDLEFDFEVTNGLFDCIKKLVPQFDVQ
QKILTELHLYKIGAEHFGSEFAMAQRKTHSPTYWWRMFGSQTPNLQKLAIKILSLTCSASGCERNWSVFEQIHSKKRNRL
EHKRLHDLVFVKYNQQLKQRYNARDEIDPISLNDIDVCNEWLVGEMDEDDDNDAGNDLVFEDDDALNWATVYEASGVGER
RMYTRRKKRERKQPTSAGISPTAAAAHTSKKRAMVVGSSSRKQKAVQENDEDLEFEDIELESEEEEIMVNFEASDGEEGE
GDAPLPYDNNEXDYVGIGEDD
>HAT-7_VV_tp#DNA/hAT-Tag1 1090-3414 (1 intron) [Vitis vinifera]
MSSSDSKNSRKDFVWKYVIEVSGEQYLRCKFCNQRCTGGVNRLKHHLAGTHHGMKPCNKVSEDARLECKEALANFKDQKT
KRNELLQEIGMGPTSMHESALSKTIGTLGSGSGSGSGRSGSGEPIPRGPMDKFTTSQPRQSTLNSKWKQEERKEVCRKIG
RFMYSKGLPFNTVNDPYWFPMIDAVANFGPGFKPPSMHELRTWILKEEVNDLSIIMEDHKKAWKQYGCSIMSDGWTDGKS
RCLINFLVNSPAGTWFMKSIDASDTIKNGELMFKYLDEVVEEIGEENVVQVITDNASNYVNAGMRLMEKRSRLWWTPCAA
HCIDLMLEDIGKLNVHATTLSRARQVVKFIYGHTWVLSLMRTFTKNHELIRPAITRFATAFLTLQSLYKQKQALIAMFSS
EKWCSSTWAKKVEGVKTRSTVLFDPNFWPHVAFCIKTTVPLVSVLREVDSEERPAMGYIYELMDSAKEKIAFNCRGMERK
YGPIWRKIDARWTPQLHRPLHAAGYYLNPQLRYGDKFSNVDEVRKGLFECMDRMLDYQERLKADIQLDSYDQAMGEFGSR
IAIDSRTLRSPTSWWMRFGGSTPELQKFAIRVLSLTCSASGCERNWSTFESIHTKKKRNRLEHQRLNALVYVRYNTRLRE
RSLQRKQNVDPILVEEIDSDDEWIAEKEDPLLPLDLCWLQDNELFNVDAIRVVSSNSQETQASSDHMVSSHSYKRKHNEV
PSKYSKIEIINLIKFNKKNF
>hAT-7_SBi_tp#DNA/hAT-Tag1 1463-3962 via tfasty/genewise with SHATAG_MT_tp and ZhAT12_ZM_tp, 1 intron (3368:3473) and 2 frameshifts. [Sorghum bicolor]
MCPNTTTAIRKEMREYLESNKRARPLFLEEQADVVEVEAIAAPAAGAESVEVEDTAPAESQASKVQPSSGTAAKQRRANY
LFKATATANAKAKPKGNKSIAEMLRKTPEEVVDERRKGCSQPTIPAKIRTKEEKHYVDQQWALWFYECGVPFNAAAARQF
EIAVEATAQFGSGYKPPTPYMLGEPLLKDAVKLTSSMREEHEQAWKMYGCTLMSDGWTDKRGRHLINFLVNSPAGTYFLE
SVDASSEVHDAFMLADLLQAKIEEIGKDKVVQVITDNGANYKAAGRILMERIPTLYWSPCAAHCLDLMLEEIGNLKEFKK
PIARAKRVTTFIYRHGRILSLMREKTGADLVRPAATRFATSFLTLKSLYKHRDALKALFVSEEWMGNKLAKTAAGQEVHN
TVLSVEFWNSVEDCLRASAPLLIVLRVVDGDERPAMPEVAALMNHAKEKIKLSLLLKTRRPSQEYLKIIEKRWVTQMDHP
LYGAALYLNLARLHSLIQANDDATVGQLRGCFLDVLGRMVEDEEIRSKIDAQSLDYEGLRGDAFSNKLAKQNLQNLNPRT
CCFSCNCSRFWYVQFNTSKYISSQNANICLYLCNIVDWWCSYGGRAIELQRFAKRIVSLCASSSSCERNWSTFEFMHTKK
RNRLLHKRLNDIVFVSYNRKMKTRFQLRREKKGKNFDPLVIEDFDWDNEWADSSYVHPQGARGCDNGDNGNGLTWEHVDE
AVGASSSLRGRNLPRNASSKRARYGDPHDLXLSNEEEEDEDPHDDADVSDCEQDPNGSNGGSENMEAPNILDEFDDGY
>METRAHAT_tp#DNA/hAT-Ac 1357-3477 [Medicago truncatula]
MFSVMESISQNLSSTLTSGSANVAEPTEQVAVATQVPVVGLPPLPCLAKRRKPNAGGPRRTSPAWDHFIKLPDEPEPTAA
CIHCHKRYLCDPKTHGTSNLLAHSKVCFKNPQNDPTQASLMFSNGEGGTLVAASQRFNPAACRKAIALFVLLDEHAFRVV
EGEGFKLLCRQLQPLLTIPSRRTVARDCFQLFLDENLRLKTYFKSDCVRVALTTDCWTSGQNFSYMTLTAHFINNDWKYE
KRILSFCTVPNHKGDTIGRKVEEILKEWGIRNVSTITVDNASSNDVAVAYLKKRINNMGGLMGDGSFFHLRCCAHILNLV
VGDGLKQNELSISSIRNAVRFVRSSPQRSAKFKECIEFARITCKKMLCLDVQTRWNTAYLMLDGAEKFQPAFEKLEGEDS
GYLEFFGEAGPPSIHDWENVRCFVRFLKIFYDATKEFSSSQEVSLHKAFHQLASVHCELKRSAMNLNTVLASMGSDMKQK
YNKYWGKIENINKLIYFGVILDPRYKFSYVEWCFNDMYGDQPTFFTDLIAVIHTQLFKLFNWYKDAYDQQHNSGHPSASP
SESSYVSENVIPAEVPSHLARAEAFKEHLKLKESIVKKNELERYLDEERAEDVNFEILLWWKQNSCRYPVLSSMVRDVLA
TPVSTVASESAFSTGGRVLDTYRSSLNPQMAEALICAQNWLKPTLNQFKDLNINEEFELSATVVSGI
>hAT-20_Mad_tp#DNA/hAT-Ac 1871-4021 [Malus x domestica]
MDIVGESTPPQNAVVAPRQTPTSLGGSGNPSDATPKEGDASDQVSKEEALLESLKSHERSSVWEHFDRKIEGGRVKGLCK
YCAQSYMADPDKNGTTNLRNHLARCRSYGPNKEIFAANRQKILTFAGTKDKLEAIGFSQEEVTKACVEMIIIDELPFTFV
EGEGFRRFCMQACPMWRVPSRKTIAKDVLSLFYSERDKLKSQLKTFRVCLTTDTWTSIQQTNYMVLTAHFIDDDWMLHKK
ILNFCVIPNHKGESIAQLLEECLVEWGIEKVLTITVDNASANDSGLRDLVHRIRGWGIPNALLHDGKYLHMRCVAHILNL
VVNDGIKLLNTAIQSIRNAVRYVRSSPQRLESFKRCVEKVRIDSKGLVILDVPTRWNSTFLMLESALKFKMAFDRLKVDD
GHYLPYFVKDNHDSTREGPPSMDDWSEAGIFAIFFRPFYEVTLKVCCSNTPTVHTTFGDLFKIKSLLHENKDDELLSMIS
MLMQEKYDKYWGSIEDMNQYLFIALVLDPRHKLEKVVDYFEIQFGEDEEKVESATNAVKDLLIDLYKIHEDMSFSTQQSI
SSGGSSQTTSGDSSSSMTEIERKLKEKSEMRKAKRARVVHNDVDKYLSDPNEGEEEENFDILNWWRVNGVSKYPILARVA
RDILAIPVSTIASESSFSTSGRIIDPYRSSLSPKMVEALICTQNWLRSIHVALHHEPTIEEMEFCEEVEKGNFIYCI
>Mx_tp#DNA/hAT-Ac  1081-3238 via tfasty with Hatory, 1 frameshift overlaps gi|54300493|gb|AAV32822.1| transposase [Zea mays]
MATLLKIKDDKGIVKTARCKYCHRNMKAEAGRHGTSSLTRHFVVCKRNPNKFNKDPSQGILQATHCEGISTFKFDQEALR
LAFAEMVIEDEQPFCFGEKPGLRKFLSKACPRFQPPSRRTCTRDVVRCFFQEKAKLKKFFKDSCQRVCLTTDGWTSQQQD
SYMTVTASFIDENWRLHKKVIGFFMVKGHKGDDIGRNVLRCMTDWGLQRVMPVTVDNASANDNCIGYLKRHLTKTNVAGG
KYLHMRCAAHIVNLIVHDGLKEVDLSVKRIRAAVRYIRNGGSRIVKFKELIEEEKLTNKQFLKIDVPTRWNSTFLMLKAA
LVYEKVFTRLADEDMSCVNDLSEEKDRYGHPEEHDWQNAKNMADFLEHFHDLTVRVSATNHITSHTLFHEIGEVHLLVQS
WLNSEDVFQASMVKRMKEKFDKYWGLWHTSKNIDGNANDKEKGRGKGKEKENMNLLIFVAGCLDPRYKLSMYTKITVEEI
FGEERGQVVWEAINNCVHDLFEEYRKLYSSSERQPDVSDSIASKGGRGGKLKEVIAKRMKLGTGSNSNNKSELDKYLAEE
TEDTEMKLDLLVWWKASEQRFPILSRLARDVLAIPISSVASESAFSTGGRILDDFRSSLTPFMLESLVCTQDWLRWTIPI
DITENIEELTKLEEGINLFLLLLKFFNWSLHISITNIALAYLIVELFEEFGKAKQAASSKTNATIKIGSNSIDLGTSTI
>ZhAT8_ZM#DNA/hAT-Ac 813-3029 via tfasty with 38345535_Osa, 1 stopcodon [Zea mays]
MADDDDVNPVTGNDDLRAAGLVPDDEDDIQADAAALLGIDLTSAPVDLSSNPTNAGGGPATATDTPVGSTSTDGGTGTSS
VGKRKSTVWVDFDEVFEKVNGSNVRIAAICRMCKTRLSARSSAGTGHLLRHQKACRKKVDHAARVQSRLAFNPDGSLHNW
EYDPIFARTELCRLIARLDLPLGIGETQAWEDYIARAHNPRFTKVSRQTTTRDLLKLFTERRNVLINSVLPATSSVALTS
DIWSGNAKEDYISVVCHYVNADWELQKRVIGLRLIEVRHTGQNIAERIGVVVEEFCLVDKIFSVTLDNASSNSKAMDTLT
PLFAGYLGPDPSPESxDPNRRNYTLMHQRCACHIINLIVKSGMKRLKPFLEDFRTAINFLNASNSRIATFKEYCKARGVR
PRKFGLDMDVRWNSTYLMLKHLVPYKTVFSVFINSHYESQLLPPNHWYVAEKILEFLELYYDSTVVLSGVYYPTSPLVLH
HILEIASHLKACERDLNLRTIVFPMQLKFLKYWSDIPLLYSYAFILDPRAKMRGFFNVLHLLGDCTGCEYSTYYADVKNE
LYKMFTKYETKFGAVRAQRAAQPSIHTGKRKQAWGRIFGDSSSGVVGPPPISTPSASSSSAICELSAYLDSDNVTSYEDD
FDILLWWRDHKLTYPVLSIMARDIMSVPVSTVSSESCFSLTGRIIEERRRRLLPENVEMLTCLKDWELGEKREQHAVDNP
ELEDSFQNLFLDEDEPVAA
>TWIFB1_tp#DNA/hAT-Ac 914-3046 2 stopcodons, so may be poor quality. [Oryza sativa]
MDESNIPSFTLGDFDPNYVSRSFPTSEYDATGSAPTPPVMEPPAGSEASGTMSGSASTNTGSKRSRTSGVWQHFDEVAMT
GPDGRHVTFARCRICKNKLSAKSSGGTGHLKRHAEACAKKQGIQLRQQQLLLNPDGTVRTWEYDPMVARENLARLIARQD
LPLNFGESPAFENYIKNSHNPRFQAVSRQTTTRDLKNVYDKGYESLKELFSTCTFSVSVTSDIWSSRAKEDYLSVVVHFI
DDDWQMQKRVLGLRLIDVSHTGENIAERIREVIDEFNLADKIFAVTMDNASANSRAMEILQPLFCIYAQSFLLHQRCACH
IINLIVKCGFKRVNVHIDAVRQAITWLTASNPRIAQWKRYCCASGEPPRKFLTDADHRWNATYFMLKVVLPYKDLLTVFL
QTRNGPKNSDGQPILTDHTWHIVERFNQFLETFHDCTLLLSQVYYPTANLILHNILEIATLLKEYENDDLLMPVVFNMKQ
KYLKYWKDIPMLYSFAFILDPRGKLRGFLNILSLIGDIINVDYSTYYADVKTKFYEVFRKYELKFQGDRLxRPPPVPAAG
KKKLQWSRIWGGSSSSHGGGTSSSAASGDARSHGPAEELSNYLDSDAIRHETSDFNVLGWWNDHKMSYPVLSKLARDVLT
VPVSLVSSxSAFSLCGRIIEDRRTSLSSDHVEILLSVKDWELAAEHAQYTADNQELAAQFENLYLDDEQLG
>HAT-10_XT_tp#DNA/hAT-Ac 730-4200  [Xenopus (silurana) tropicalis]
MTGRGRGRKGGMGGKGGEGGRKGGVGGEGGRKGGVGGEGGVGGKGGLGGRSRGAGCGQEPSTRAMPSLGNIGQQPQQQSQ
QQQQQLQQQQVAGRSGATGSRKTLPDFFATTSRPIQSQQAEAVMDWLTQATSSAADSSEQQEVASPASSVIRGMLSPLLF
DPEVDFSPDTQDLFDDQTGMGGAFLSDEEEVYVAQHTTSAVGDVGQGPLMAGQQADEPDVDVDAGSDLGEDVEDDGDRSW
VPAQEDNSSSSEGELCVVVSDADEEPAPKKQKTPPTTARGGRQQGSTAPGSTGSGRMGRDLQPSGPQPSTAGKVVARTSA
VWAFFTCQSQDPSVAVCHLCRQKVRRGQTGSHMGTSALSSHMKRHHRMTWEQHQSGRAPGGSGASCPPPPIPQGTGASSP
IPVAREEDSEAHSWRRPLCSSASSAAPSVSSSSLLPSAQPLSRQVSLPQFLGRKAPLSSSHPQVQRLNACLAKLLAVQLL
PYQLVDAAPFRQLMACAAPNWRIPSRHYFARKAVPALHQQVVDNVSLSLDYAVGGRVHCTTDTWTSRHGQGRYISYTAHW
VTLMSAGEGAGSRTPLRLEVPPRGVKGKPHTATSSSSSSTMDEPPLKRPRSYASVQYKRCQAVLQLLCLGERSHTAPELH
AAFQTQVQRWFTPRQLQAGNVVCDNGRNLLAALHLGRLTHVPCFAHVLNLVVQHFLKSYTGLGVVLEKARRVCGHFRRSP
TASASLSRMQRQHSLPPHRLICDLPTRWNSTLHMVERLVEQRWAVSNYLLEHSARGTQGANLGYFSTEQWQQMRQLCRVL
APFEQATRFVSRDNACVSDIIPLVFLLKRTLDGLLEEGDVPEEEECRPRRQVEGAARHDEEDMPNEEDEGEEDWVPAEQG
EQGPRHPTTPAVVRGWEDTEQGEEAGDDLLHLQGSQEEVGRGHLFYMAAHMQTCLRSDSRICAIKDREDYWVATMIDPRY
KEKMAQFLVPSQRERRVGQLKRALCAKLMEAFPQPDTQASTTPHIQQRQESSSSSSSAARGGGNLMDVWRSFFEPRQAAA
GLVSTQSHHQQRLDNMVADYMGSVSVQDAMHTDDDPMNFWVSRLDQWPELAQYALEVLACPPASVLSERVFSAAGGVVTE
KRTRLSTGSVDRLSFIKMNEAWISGDIHVPIADIRD
>hAT-3_DBp#DNA/hAT-Ac 474-2237 via tfasty with Homo7, 2 frameshifts and 1 stopcodon. [Drosophila bipectinata]
MVWQVFKKCKDSNTAICNQCGKQYKTGGNTTNPMDHLKRIHPALLKEQPLEKEKSLTKFLERDTLYSNTSEKKTLDKLVL
NMVASDVLPLNVVNNVRLTRLIHELDPRYKMPSKTHLRNVLLKNEYNNLKDTLKADLEHIESVALTTDGWTSRANESYLT
ITCHYVTTSFELASKILSTNQLASPTNHSAINIADTISNVVAEWGLLGKVFCIVTDNDATMKKACAHLKIMHISCYAHTI
NLLVQDLLKLPCVSGILLKCKRTVSFFKSSNIAYAKFKEEQGVSKPYSLVQEVPTRWNSALFMIQRILETNESISKVLLK
TPKSLPPFTADEITLLKELVEILNAFQDATVSISGDTKVTISLIIPTCCELRQKVSEMGSFISPEAKQVVDYLKVRMPER
FSPYETRTATRLATILDPRFKKDGFLQPSNAEQAAKTLELEVSTYLSKTVQRPQPAPPQQKRFSFMSKKLEDKVKSNKAD
AIIILRQYFEVSHEAEEANPLEYWKVIKNINICSMGVKNIFSLFxEHTKDTTALAMLAKKVLCVPSSSCASERAFSKAGQ
IVSDRRCALKPNIVDKLLFLNKNSDLKK
>hAT-2_Crp_tp#DNA/hAT-Ac 757-3303 [Crocodylidae]
MKRGGKAGGRTGQPARRGARGVASGRAAVSPPTKLRRSLFPPATRDEAATSSKERGAAVPPEPLPVPETLSCPDAAATTS
PTITATSTAARSTPVSLPMLSLPAPEEELALDLDLSALAREVLGKEGESVEFVLDTPQVFSFQATRSFPEGTSEGASVQV
KASGSAESALSLAVPLTAEEGESSAASTDAPARQRERPSTSVVWDHYELADDPAFAICVHCRAKISRGKGTKRMTTSGML
NHLRRYHPFATGTAPARSTAPVPPQQRQGTLEHWGQKGPVANASKVTQTIGEMLALDGQPFTFVERPGFRRLLALLAPSY
QVPARTTFSRTVVPSLYEACREHLREELHKAGPQVTVHFTSDIWSSRGGDHAYLSLTGHWCGQSGRRWALLHAKVMDESH
TAAEIRGAMNRMVQGWLGVGQAELTRGFMVTDNGANMVKAVRDANFAGIRCVAHNLHLIVRDALEGDRAAGDGASNTSRL
VSRCRKVAGYFHRSIKGGKMLRDKQAELNVPQHRIIQDVETRWNSTYLMLERPVEQQKAIHELALLGEIGISGPLTKAEW
DAISQILLVLKPFLEATETLSAADAFLSQVVPIVKELRSQTESFLGANVPGWGRPLSPDVQAPVRRLKEGLRKRLEPLGS
NTVHMLAAICDPRVKGTICGSETLSHWREVLIKKVTEAERRRRGEVEQGDPLPEPSLPSTSQSSPPPQALPIWAKAMANI
RGSRPTRPQDQADSPHTVVSAYLAEPVEPLDCDPLAYWATRSPMWPDLATVAREYLSCPPTGVPSERVFSMAADVVTPHR
ACLDPGLVEQLVFLKVNLPLPGLPKRQVQTERTPPSSLRLXHEFCLSAA
>hAT-3_DK#DNA/hAT-Ac 210-2035 via genewise with Hopper_Bd_tp, 1 intron (1470:1528) [Drosophila kikkawai]
MAITNXRITSKTSFCWKYFAKLNTSSVKCTICAKILKTCGNTTNMKDHLRAVHKINKEDVEIDQTEPKRIASQLSIMQSF
ENAAEFGSDGQKTKINDAVVYMIAKGMQPFSIVDNEGFINLMKTVxPRYRIPSRGTxTKWVxHKHVQLKExSKTLLQDKT
VTITMDVWSDQMTMRSYLGITVHFHDQHDMASLTIGVLELSERHTGAYLGNMLETCCxDWNIEKHLVxAVVTDNxANVVK
AVELSFGRNKHIPCFAHTLNLIARAAMQKNGISSIIVKVKEIVTFxKRSxVASDNLRRHTDKTLIQDVPTRWNSTFYMIQ
RFLELKTVVNDILLSVCNELSMLNGNELQLLNDIIPMLRPLEEATNIISGDSYCTASMVIPMVNILKEKLANVTPNMPDA
KDIKDFLLQEIDRRMGAIEEVSILAMATFLDPRFKKLHFKDAQACETSIQKIKSIVKPMATENVKENLKNSTNNNSSSFW
DHHHHLAESHSPNGDVDIEVMSYLQMPLAPFHSNPLQIWDGMKNSYPNLHRVALQFLPVVGSSVPSEKVFSAASNVLNRK
RNRICPDRLSRILFLKSVNKKYYFCNSXD
>hAT-4_DBp#DNA/hAT-Ac 319-2227 via tfasty with Homo7, 3 frameshifts and 1 stopcodon. [Drosophila bipectinata]
MSHVWRPMSHLFIFYNIGTTKENIEGPSPKRKRETSCVWQHFKKTEDKTKATCIHCGKTLKTAGNTTNLMDHLKRIHPNY
SVLEIDGQSPSLDSFMQRNIEYPPESQKKKTMDKYVMLMIARDVQPFSMVEDDGFRNLMQHMDPKYKMPSRTFFREVMLP
KIYNDLRKDLECELEGVQYVAITTDGWTSRANEAYITVTCHFVNKKFQLITAVLSTASLLTPTNHSALNIADTIRQVLNE
WKLLHKVVTIVTDNDATMKKACEHLQIKHFPCFAHTINLLVQEILKLEIIRPILTKCKTVVAFMKRSSTAMAKFKDAQMV
TAPLGLIQEVPTRWNSAFQMMERILQTNEALSIALLGTAKAPAPFSAEEIGVLEELCSLLRPFEKATKLISGGKYPTMSL
VIPIVCEMQIQVFSYKHSFKSPEAILAFNFLSDRYNDRFGHYETRTVPRMATLIDPRFKKQGFQRTNNADQAYRALEDEL
HNVFKNLAQEPSTSASIAPTPPIQLRAILRIFNSKYISSRTTTTRSDAIILLRQHVESGNEPETCDPLNLWMVNIEIIEV
YYIILKQYYYNSSCVQTTCSPARSxKKILCIPATSCESERAFSKAGQIISDRRTRLKSEVVDQLMFINKNYYIFNK
>hAT-3_GM_tp#DNA/hAT-Ac 605-2390 via genewise with HAT1_MT_tp, 1 introns (1878:1962) [Glycine max]
MEMASETVNRVDSVDDIEFMEDEEEARVEPKPNAKENRSDNDEKESKKVKVCTSIAWKYFTKIGVVDGKEKAECNACGQQ
YVIGGSKVGTSHLLRHVKLLCKKKAKFHDVGGMIIDHAGKLRSREVDQKRVLELLTMCIVRHGLPFNFVEYKWVRELLSY
INSDVKHVSRNTLVSSLLKLHGEMKEKLKYAIHKCHNRICLTSDCWTACTQEGYICLTTHFVDNNWKLNSKILAFCKLEP
PHTGEDLANKVFEVLTEWEIDRKIFSITLDNASANDRMQELLGEQLRLQNSLLCDGEFLHVRCCAHVLNLIVQDGLKVAE
VALQKIRDNIKYVRASESRKIVFTECIAQVRGIDTKVGLRLDVPTRWNSTYIMLESALRYRRAFASFTIRDRKYKCCPSN
EEWKRAEKLCEFLKPFYKMTNLISGTSYPTSNEYFMQVWKIEWLLRETLKCDDPVLQNMAVLMMEKFGKYWSDYNVILSI
AMILDPRMKLEALRFYYSKLDASTCDEKINNIKEKMYKLFDEYVSVKSSSSTASSSQQPTVEEDFSIEENQEMDDPYNVS
LFFCLII
>Blackjack_tp#DNA/hAT-Blackjack 760-2721 [Eutheria]
MSSKKRKCMFNEKLSTEFPFLKKVDDERVTCTKCLSTFTIHHGGRSDITDHMKTRRHKSAEEASASTSKVSSYFKKTVPE
DDDLTRAAAEGAFTYHSVKHDFSFRSNDCSSKLISLIFDSKFSCARTKSEAIAVNVLAPLAEELRKQLNDASFISVSSDA
SNRKSVKLIPIMVRFFHPIHGIKVKLLEVHSVEGETSDIIVNAIVNSVKKFNIEDKIICFCGDNTNTNFGGAQRRGKNNV
LTKLRNLWSRNVLGIGCGAHIIHNCVQTSCDILPIEIEAVVVKIYKYFYIYTVRVTELQNFCDEADVEYKKILQHGSTRF
LSLLPVINRILEMFEPLKNYFVNQPKCPTMVLNFFVNESSKFWLHFVQNQLEIFNQSIQRMERQKTSAFEAFSELQLLKT
KLANRKTLKFIPTKAREELNKLNDESSNGVQDLILKFYNCALEYLDLWEESFDGAPIFNWINLYSVPEWNEIEKAYDFAA
SKFGETFKRIINRDNLFDEFCLVKIFVEERYSEWRQKDSTCENIWAEIFTHFNIKKIRIENILHLAEFALSLPGTSAPVE
RVFSQLKILWSTEKSQLKVSTISNLLTIKCNFEEDCRQFYEKIKNNKTILKKYILQKNTSDTVLETDTAKKLIKVREYVP
RIIILLMLFLMFR
>hAT-10_Crp_tp#DNA/hAT-Charlie 457-2309 via tfasty with OposCharlie3_tp, 1 frameshift and 1 stopcodon. [Crocodylidae]
LDSKKPKLDIRKFQPAWRELYGFVQQGDCVVCSLCSKSVVSRTSSVQRHFATKHEAKFSGVDEADKHESIRKAVDSFKKQ
TASFSSFVTRNTLSTWASYIAALAIARKGKCFTDGEYLKDSFLKCAEDLFQDFANKKDIIARIDEMPLSSRTVQRRIDEM
ATNVREQMTQDLHACDVMSLALDESTDINDIPRLAIIVQYFISGEVWEELFSLSAMHSTTKANDILNAVKDIFTQQQIDL
HKVFSVTTDGAPAMVGKTAGFVKLLETEIGRPLMSFHCIIHQESLCAKISSSDLNEIMTTVVKIVNFLIARSSLTHRRFC
ELLNDMDSAYGDLVLHSNVHWLSRGNVLKRFVACLKSIKLFLEESGQQYADLTDDRWLTKLMFLTDITSHLNDLNTRLQG
TQKTILQLSEDWKAFCDKLSVFRxDIETSAFRYFPSLKIHSEQHQLNNRDICNYIGQLEDEFTRRFQDFATEDTMFSFLV
NPNSTRESDTELQYFQWMNTEGFELELIDFQSSCIWVSKFKSLRGELENERDWQLKITACWSSLPEKYACMKKVAFALLS
VFGSTYHCEQVFSQMKTILSPMRNHLMTDNSDSCLCLTTSYQPNIAKLSCQKQGQGSH
>hAT-4_ML#DNA/hAT-Charlie 1594-3399  [Myotis lucifugus]
MSGPKKRKVDSECRVFKREWTTKYFFTEVRSMPVCLCQETLAVFKEYNLSRHFATKHGNYASKQSPQEREATAQRLMAKL
QAQQNVFHRQSAIQETTTKASFMLSFKLAKASKPLSEGEFLKECMIETAGLLCPESKGKFEKLSLSRRTVTRRVELIDED
LASKLNSKAEFFKFYSLALDESNDVKDTAQLLIFIRGISDNFEITEEFLAMEPLKGKTRGEDLYDWVSTVIEKMKLPWSK
LANVTTDGSPNLTGKNVGLLKRIQDKVKEENPNQDVIFLHCIIHQESLCKSILQLNHVVNPVVKLVTFIRAKGLQHRQFI
KFLEETDADHHDLLYHSRVRWLSLGKVFQPVWELKEEIGAFLKLKGKSDKFTELSDKNWLCDFAFAVDIFSHLNELNVKL
QGKDQYVHDMYTNVKAFKSKLIFFSRQISDKVFTHFATLATQKETIQNVKKYSKSLDDLHAEFCRRFSDVEKIDQSLQLV
ACPLSQNPETAPEGVQLELINLQSDFVLKEKFSSLELRDFYASLNEATFPNIWRMAQKILVLFGSTYVCEQTFSVMNINK
APHRSSLTDEHLRSILRIATTKLTPDFDALAKKGDQQHCSH
>hAT-15_Crp_tp#DNA/hAT-Charlie 146-2067 via tfasty with Charlie10_tp, 4 frameshifts and 2 stopcodons. [Crocodylidae]
MDKFLNCPVATASTSDTRNSSQPEKKINRRYDPAYKFGFSFIEDRKGEHRLQCVICSELLANESLKSKLCRHLETKHPSY
KDKPLDFFxMKMQRFGNAQKRLERVCTVQEQALRASYLVAHCIAKCKKAHTLAEELILPSAIDMCTELLGESAAKKLKTI
PLSNDTIWRRVCDISEDIKLQTTDCLLVSDCFALQLDESTDVSNCAILLVYVRHVWEGDFQEQYFFSADLPTSTTADDIF
VALDNYLELVGLSWSKCVGVTTDGATSTMGKHSGVVQRILLKAPNATWNHCFLHREALAAKDVVPELHKTLKDVVKIVNY
IKQNAKNSQCFQVFCQEMGSEHVHLLYHAEVRWLSCGKVLSRLYKLRSELAAFLEGKSLTWSEHFNNDTWLAHVAYLADI
FHPLNDLKLSLQGRGHNRFEQADKIAALKKKNPHLSLWTKQVSNDRMDMFHNVSLETKNWKDSASQEALKKTISESLTKL
HTRFCNYFPDKQLKGKEWIRDPFGVVLENVSLLMEEESQLVKLSCDYSLQKNNTEISLPQFWxSAAGKYPALACHAIRVI
LPFSTTYLCETGFSALTQLKNKSRNRLNVEHNLRIALTTVTPTLINSKGSKLRFLIKWNLGFIIQQSISTIVEYFVTFSS
SI
>hAT-40_SM#DNA/hAT-Charlie 704-2518  [Schmidtea mediterranea]
MASKKRKVDTECRNFNDDWKWKYFFTVVKEKAVCLICNSGVAVFKEYNLKRHFETKHENYANNLNEEGRKKHCEDLATKL
SRQQNIFVKQNHLQESVTEASFLIAKRIAECGKPFSEGEFSKKCMLDVCNVLCPELKNKFENISLSRQTIARRVEDLNVD
ITNQLLNNIELANFYAIALDESCDIKDTAQLLIFIRAINDDFKILEEVLEIVPMKGTTTGEDLFQEIEKCFLKYHIDWKK
LVNVTTDGAPNMTGKNIGVIKRIKDKIFEIDPNHKIIPIHCIIHQHVLCKNVLKIDHVTKIVVKLVNFLRAKGLNHRQFI
DFLEELNTTYSDVIYYNKIRWLSLGKVLKRVWELQEEIRIFLVLKENEEFPELTDPNWLCDLAFSLDILTYLNEFNTSLQ
GKKLFAYDLMQKLKAFKMKLQLFSTNLAECKFDHFPSLKTISAIILKEKAQMYTENILALRLDFENRFECFNRIDKILSI
VRNPFTANIEEASPDIQLELIELQCDQLLHDKYREEEDNLCNFYKQLDSKKYVNLKNLAKKYLVIFSSTYICEQTFSLMN
HNKSPTRSRLNDLHLEAVLRLATTEIEPDIKKIINEVNRLNISH
>hAT-35_SM_tp#DNA/hAT-Charlie 572-2406 via tfasty with Charlie1_tp, 1 frameshift. [Schmidtea mediterranea]
MQIVTEKEELVTSKLRETMTKKRKYDESYLSLGFVDANNMPQCVLCAKIFPNSSMVPAKMRRHLETVHAEYKDKKTEYFM
RKRDDFLRGQNLIVSTFKTENEKATEASYLVSYRIASAGEAYTIGERLIKPCAIDIAKCLLDEKSAKAVSAVQLSNDTVT
RRIIDLAANVKYELISRLKYCNFALQMDESTDVAGLAVLLVFVRYQYLNSIEEDLLLCETLQSYTTGEEIFNIVHNFVEN
NGLDWKNCIDICTDGAKAMVGKTAGAVSRIKNLAPNSTNSHCILHRQALAVKKIPILLKNVLDEAIKIINFVKSRPLKTR
LFKILCDDMGSIHKNLLLHTEVRWLSRGKVLLRLFELRCELASFFNENEMNLQQRLTDKLWLFRLSYLADIFSKTNEVNL
SLQGKQVTLFTANDKIEAFKRKLDFWITCSRTRDLNCFPTLMDFYNEIDGEIGENDMSGLCGEICEHLVGILNCVNQYFP
DEHNKKLKINEWVRKPFEVNQKPIEFTVEEYEAFIDMISDSSLQSKFEKLPLSDFWCSIKEEYPNLSKKAVNILIPFATT
YMCESGFSSYASTKTKYRNKLNAEADMRIQLSSIQPDIKKICQNNKQVHSSH
>HAT-2_DR_tp#DNA/hAT-Charlie 255-2087 Transposase [Danio rerio]
MPANTMDRFLRPPDSKPSSSGLKPKRRRYDDQYLSLGFTWTGPADEPRPLCVVCQDILANDSMRPAKLRRHLETKHDEVA
GKPPEFFKRKLQTLQGQKKIVEDFVKLNGKATEASYRVALRIAKAGKAHTTGETLILPAAKDICSVMLGEAAASKIDSVP
LSDNTISRRISDMAQDVKEQVLDGVRHSPFYALQIDESTDVASCAQLLTYVRYVKNMDIHEEFLFSSPLPAHTTGEQIFN
QLNEFVRKNDVEWERCCGICSDGAKSMTGRYSGLMSRVKEVAPNAIWTHCTIHRQALAAKKMPNDLRSVLDEAVKIINLI
KARPLNARLFHILCDELGAHYKQLLLHTEVRWLSRGRVLSRLLDLREEVLLFLSNVQSTLVQHMSDLSWIARLAYLSDIF
ERLNALNLSLQGRDCNVFSAFEQVSSFRRKLDLWATRVEKGCLDMFPTLADFMQEAGSVVHIQPLVAEHLRGLCQQFTHY
FSNETILDEWIRNPFKFKPAESDVLSIQDEEALIDLTSNHELQQMITHSSIEHFWLSVQNEFPELTQKALRKLLPFVSTY
LCEPEFSALTFIKNKYRSRLQVEDDLRLFLTSLQPRISLLCAARKQLHTTH
>hAT8_SP_tp#DNA/hAT-Blackjack 456-3640 via genewise with HAT6-2_SP, 2 introns (1636:1977, 2141:2500), 3 frameshifts and 5 stopcodons. Perhaps an intron missed.  [Strongylocentrotus purpuratus]
MERKRGQAYNKKYADEFDFVASSGKSKHHATCKVCRRDLSILHGGCNDIVVHCKSKQHITAFQSESSAREITSWMSTSKD
FNITRAECLFTSFYLEHNIPLSAASHMGPLLRKAFPNSEEVKKFSSARTKXSCLVREMAKDKQGQIVSAMKARPFAISTD
GSNVSDSKLYPIVINYHDGKQISCTLLSLPTLEMAGTGENIAQLLITELQNHDISWDNCTSLGSDNASVMTGVHKGIGAC
LGKCQPNLIVLGCPNHLIDLAAKAASSALPYSIDSLLIDVFYYLEASVNRKLNLKKFQMLIGNEVQAILKHACTRWLSLG
QCLPRFIQQWQALVLFFEGEAYSXTEQKTPTQQTKQKKPTQQTKATKNSVQTSLVPKKPTPAVKNKPAQGSQLKEKPAHQ
TKMTAQLQAFRIPKKVSADPPHVSKPAQSQTQVSTKVDHNSSLFSRSDVDHLQAVLLGEKRQVRDTSDTPSKKQKTGKVV
GKATGSTVLKAGTSSHPSTISSKMTGNEKNKMXGGKKETRRTVKDETRQERILKSLHSNPILAIAHFLSHSIIAFDKKSV
IFQTRSPLIHKLKGILESLLRDLYSQFVAPQAIIAATDLTLLDYKNKENLREESEMVIGSATREIVNTLDESDCHKFYAA
VRSYYTKACDYIVSKFPLKSDVLIHVQVADIACQKDAKFTSLKFFINKFPCMLLQEEEDKHSALDALENQFLIYQLAQLP
YLVQNEESTDKQWTSMMTEKNASGELCYDRLARVMLGILTIPHTNAECERVFSQVRKNKTDFRGSMSNKTLESVLITKAR
QTTPCYMRECDSDFPKRAKSATYRALNE
>HAT6-1_NV_tp#DNA/hAT-Blackjack gi|156390574|ref|XP_001635345.1| predicted protein [Nematostella vectensis]
MGVCDASFSVCHQGKRDVDRHLAGTEHKRASKTTSEHKSVKSFFVADKQKDAVTNAEVLYTGYILEHNLPFESTAHAGEL
FRKMFPDSEIAKKYGCAPTKTAAIVNYALAPEMLDPVVQYIKTQPFSLAIDGSSDTGTASMYPLVVRIYDVNRGEVASQF
WHMCLISDCTAQGIFNSVSDVFRDYEVPWENVIGLSLDNASVNMGKHNGLYRHFERKNASVYTFGCPCHIVHNTASYGAK
AYAEAAGFDLGDFLVDIYYYFDNSTKRQASLKDFCDFCDQDYRKILKYGATRWLSRELCVSRVLKQYPSLQSYFASQPEL
RSDKRLCRLREYFADPXTEIHLMFFQSILPVFSELNKQLQGEEPQIHCLRQGLSDFLQKLLGRCMLATSYKDKDLDDRAS
MNFENEDLFLSPKDVMIGFTTRTTMQKHNLLPEEEKKLAQDCRKFMTASLQYACKNFPLKDPLLKHAEFLNFHERANQTF
DSVQFFISKFPTLEAAMEGKMDALYDEFCAYQALGNDSQLSDLSRIDHIWMYLGKMEGKNGLRFGLLAQVAQYVLVLPHS
NAAEERIFSTVEKNKTKYRGSLSNTTTLPSILTCKTNYFNHTHCYKFKPTKSVLQKAKKAATTYNADHSSTSK
>AeBuster3_tp#DNA/hAT-Charlie 1038-2813 [Aedes aegypti]
MDKKRKYCEEYIKYGFTVLTINGIDKPQCVLCNIVLSVEALKPSKLKRHLETKHPEHIQKDTAFFQRHETGLIRSRFGAT
GSIQQQNTAVLQASYEAALEIAKNKKPHTIGETLIKPSMLKMVSLVLGEASAVKMRQVSLSNSSVQRRIADMSEDVKIQI
LEEIKQSPLFAIQLDESTDVSSCAQLLVFVKYVHLDNLKEEFLFCSDLETTTKSDDIMAKVKTFFDSNGLQWEKLCGVCT
DGAPAMLGSKSGFQKKIKELAPQAKGVHCMIHRYALASKTLPKDLQKVLDSVIKIVNHIKSGALNTRLFKELCKEMNSDH
ETLLFHTAVRWLSKGNVLNRVFELKHEIKTFLETQGKTDLLGNFYETGWNKRLAYLADIFDQLNSLNLKLQGKQTNLILF
QDSLQAFVAKIKNWRRKVKANNVAMFERLCSMLDEEAEEIETELKTEIIAHLDSLDEQFERYFPELTQEEAALVRNPFSP
SLDVASLPDRIQDEYLDLRNDSSVRDLYNEKNLNQFWCTMYRSYPAVSLQALKILVPFASTYLCESGFSCLLQIKTKARN
RLNVEDDMRLALSDTQPRITKLVSQMQTQQSH
>Charlie25_tp#DNA/hAT-Charlie 384-2363 [Theria mammalia]
MDQWLKSGSLKRKSSDENSNVNTTTQNNVINVNSEQDSSANIECESVCAGTSESASVMISHKQPKKKSANRKYDDEYLKI
GFYWTGDPFAPSPQCVVCYETLSNSGMKPSKLSRHFQTKHSDLSGKPIEFFQNKRKIMLSSTKLMNFVAKGREETKTTEA
SFKVALLIAKTGTSHAIAEKLVKPAAKLMTNIMLGEKAERAIGKIPLSNDTVGRRIISMAYNVEEQLLSRVRASRYFALQ
LDETTDVQSMNQLLAYVRYIYEGEVLDDFLFCLSLKTHATGEDFFYLVNDYFVSRDVDWKRCVGISTDGAPAMCAARKGV
ATRIKEVAPECQSTHCFIHREQLAVNNMPPDLDSVLKEIVKIVNTIKSRPLSVRLFSVLCEEMGSEYKTLLFHTEVRWLS
RGKVLTRVFEMRDEIKTFLHDTDNASKDHFYDFKWLAQVVYLSDIFSILNSLNLSLQGRNITIFNVEDKISGFLKKTELW
CKRLDRREFDSFPTLDDFLHSSEKEIDDVLLGIFKNHIQMLQQNMKKYFPEPNATKEWIRNPFAAISQVETFNLPAFECD
VLVDLASDGALKVVFSEKSLHNFWVHVRSEYPELSDRATKHLLPFPTTYNCELGFSNLVEIKSKKRNRPDVEPDLRLKLS
VIEPDIDTLVKDCKQYHPSH
>Charlie7_tp#DNA/hAT-Charlie 386-2347 [Eutheria] Charlie7_Aves & hAT-7_Crp (should be Charlie7_Longi_tp) bsaically identical
MDKWLKKIPAKKPRIEDNTNNASTSEQQENGRADTSTPSTSSSSATLRGKNNDDLIRSDKKSAKKIRNYQEDYLKYGFTS
TIVNDEPRPKCILCLEILANDSMKPSRLARHLKIKHPEHEDKPLQFFQRCLKSCDTQSSTLQNFTKLNDKCLEASFEVSY
LIAKDKKPHTIGETLVLPAAVKMAEIIHGKQYGDKLKCIPLSANTVGRRIENIAEDLKKQVLEQITQCGRFAIQLDESTD
VSNMSQLMVFARFCFNNEIHEELLFCEPLKERCTGEDIFSTVNDFFNKNNVLWENCVSVTTDGAAALTGIKKGFRGKVTE
IAPHVKFIHCIIHRQAIAAKKLKPEVHKVLQDVIDVVNFIKTRPLKYSRIFTILCNEMGSDHENLLYHTEVRWLSRGKVL
KRVVELKDELRIFLLQKDKCSKFADLFCDDKWLSVVCYLADIFEKINTLNLSLQGKGDVLTMSEKVTAFRKKLVLWREHF
ENGCLEMFPSLCDFVAENDVNVSPIKTLISAHFKNLETEFSNLFKNLPNEEFQWVLNPFVKNIKMQHLPISLQEQLIDIR
EDGNLLAEFQQKPLHNWWMGLK
>EnSpm-8_ZM_p1#DNA/CMC-EnSpm 1250-3769  (may have more exons) [Zea mays]
MAEDRAWMYNGWSRNGRHSDDWVAKTKDFVDHVFSLSLTGTVRCPCRRHENSIFLNKERVSLDLCQFGFMPGYEVWEHHG
EVVPNRNVEEEENNDWAGDDAMHEMLDSLRPELNLSSEDPATPEVSRFFKLLKDSEEPLHEHTDVSILAFVTRLMAIKSK
YFFSNNCYNEILKLLGDVLPKPNKLPKDMYHSKTIIKGLGMDYEKIDVCKNNCMLFMKEHAEEKKCLKCGQSRFVEVVND
EGEKVMTDVAHKQLRYLPLTPRVKRMFLSKKTAMHMRWHKEGVRDNDDLIVHPSDGDAWKALDTFDPDFAADPRNVRIGL
ATDGFTPFGQMASSYSCWPVFVIPYNLPPSLCMKYEFIFLCLIIPGPDYPGKNLNVMLKPLIEELKELWKGVEAYDVFTK
QIFKLRVAYLWSVHDFMAYAIFTGWSTHGRLTCPYCGSDTDCFRLAHGGKITYFDCHRRWLPRKHPFRSDKKNFIKNTVV
TKGPPKRLNAAEIYAQLNNLVLNEKGDKYEGFGVDHNWTHICGLWELPYMSSLILVHNIDVMHQESNVAEALIHTCMHFE
KTKDNLKARRDLAMLCDRPTQVLNDNGKPPRALFCLTSKDKIEVMRWMKKIKFPDGYAAGLKRAVNLKTGKLTGLKSHDF
HILMERIIPVMFRGYMPDAMWQAIAELSYFYRQICAKEISKNMMEKLEKEIPVLLCKLEKIFPPGFFNPMEHLLIHIPYE
AKVGGPVQYRWMYHIERALKNLRGMVRNKARVEGCIAEAFLLKEVSYFTSVYFAEEHNVYAATMRYNVDEEPPVSDLNIF
QWRGTSTSKGTFYHLSMDERMSALLYMYSNMEEMEPYFM
>O30788_RHORH/271-355 transposon family T20 Pfam:PF02371
AVIESMPGIGPILGAEFVVAAGDMSAYSDAGHLASAAGLVPVPRDSGRRTGNMHRPKRYSRRLRRVFYLSAQTSIIKDGP
NREFY
>O68995_MYCAV/270-354 transposon family T20 Pfam:PF02371
DIYRSLPGLGVILGARVLGEFGDDPNRYTNAKCRKNYAGTSPLTIASGRKRAVLARHIRNRRLYDAIDQWAFCALTRSPG
ARQFY
>O85214_PSEPU/212-294 transposon family T20 Pfam:PF02371
QKIAEIPGIGLLTATAAVASLGDATTFHSGRQFAAWLGLVPRQTGTGGRVRQLGLSKRGDTYLRSLLMHGARSILNRGHR
SEW
>Q56420_THETH/192-275 transposon family T20 Pfam:PF02371
EVLMALPGVGPQVAAAVLALLPPELWGRAKRAASYAGLIPEREESGKSVERSRLSKKGPPLLRRKLYMGALVAVRHDPEM
RAFY
>Y4IO_RHISN/122-206 transposon family T20 Pfam:PF02371
AMLKAIKGIGAEFANILASEGLFRQFDNRRQIAAYAGLAPSPWRSGSIDREQGVSKAGNPRLRTMMIQLAWLWLRHQPGS
ALTRW
>Q10843_MYCTU/57-141 transposon family T20 Pfam:PF02371
HIFTSLPRSGTVRAARLLAEIGDCRARFPTPESLACLAGVAPSTRQSGKVKHVGFRWAADKQLRDAVCDFAGDSRRANLW
AADRY
>Q05411_CTEFE/37-117 transposon family T1 Pfam:PF01359
YFEDLKRKKSWVDPSQPSTSTVRSNRIGKKTMLCVWGDQEGVIYYELLKPGETVNTQRYRQQIMNLNDALLEKRPSWVTR
H
>O18578_9CUCU/37-117 transposon family T1 Pfam:PF01359
YFENPKRKKSWLSPGEAGPSTPRTNRFGKKTMLCIWWDQGGIVYYELLKPGETVNTQRYRQQIINLNHALIERRPEWARR
H
>O18573_9HYME/37-117 transposon family T1 Pfam:PF01359
LYDNPKRQKSWVSPGEPSTSMAKPSIHAKKVMLSIWWDFKGVIHYELLVPGKTITADYYQQQLMNLHDELERKRPFTGQG
T
>P91735_9CNID/37-117 transposon family T1 Pfam:PF01359
VYNNTKRCYHWLSPDDPIPKTPKPNLHKRKVLLCIWWTTAGVVHYELLPTGQTITGLVYSAQLQRVHDLLLVKQPALVHR
R
>O18574_9HEMI/37-117 transposon family T1 Pfam:PF01359
MYCNNKRSYHWLSSNDPLPLTAKPSIHQQKNLLCVWWTTSGIVHFELLPSGQTITAEVYSAQLNRVSIALSQKHPALVNR
K
>Q51474_ALTAT/194-276 transposon family T20 Pfam:PF02371
CILQSMKGIGKIASASIISNLPELGYMTNKQASALVGVAPMNRESGRYKGLRKIQGGRHQVRTVLYMAMMSAIQSNPVFK
ETY
>Q97YU1_SULSO/17-295 transposon family T2 Pfam:PF01385
VHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWSLTKIQVRKKNGNYKITLPKKKEVYKPLREELEKINHLASHYVDKA
INDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPHEYITFPWSKSWFSRRVRELELGEPIIK
EEKVYLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFASKHTKRGRELMRKYSH
RERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGMFVD
>P73816_SYNY3/6-279 transposon family T2 Pfam:PF01385
QYRFYPTNQQRQGLAQLFGCVRVVWNDALAFCKDSEKLPSYNALSKRLTECKQTEEKIWLTDVSAVPLQQSIRNLSAAYK
NFFDSVNGKRKGKKVNPPKFKSRRSKQSATFTSAGFVLKDNDRIYLAKIGFLDVVWSRPLPSIPSSVTVIKDRANRYFLS
FVVEVDPQQLADNGQSVGIDLGIIDFATLSTGEKIKSPKPLKAKLKRLRKCQRNLARKQKGSKRREKARLRVAKVHAKVK
DTRTDFLHKLSTRLIRENQTVILEDLNTAGMMKN
>YADD_ECOLI/1-276 transposon family T31 Pfam:PF04754
MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTLHLESGSFIEESLKGHSTDVLYSVQMQGNPGYLHVVI
EHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPILFYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITI
TPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQRGHTEQADLFYGVLRDRETGGES
MMTLAQWFEEKGIEKGIQQGRQEVSQEFAQRLLSKG
>P95873_SULSO/1-161 transposon family T33 Pfam:PF05457
MGVEGSTMARTLRHIPNLMYYPLPPIEDMPWREKWLTEIKPVLDAMDLERVLGEGALVYLKLLIVMVLYSCSYRDAVKMV
NVNVVVAWFVGRKVGKSTLHDFVGRLYGVRKKLLEISFKLEEKCLPSYLPASAHLVDFMAWLVDSFLLDLPPGKRSVETF
R
>Q9KHW7_SALDU/4-294 transposon family T31 Pfam:PF04754
EKGHNRPGHDGLFKLFLREPDTARDFLAVHLPADIRAQVRLDTLKLEPGSFVDQKLRELHSDVLYSVETAEGHAGYIYCL
VEHQSTADRMMAWRMMRYSMAVMDAHLKKGNGTLPVVVPLLFYQGMVRPYPYSTDWMDCFDVPALAREVYSRPWPLVDVS
VMEDCDLQSHRRMALLELVQRDIRHRDAASLLRDVVQLIRLAGNTRAQVEAVLCYIIYNGMTSESITPFLYELAGEIPEY
KELIMGTIAQQLKEEGIQQGIQQGIQQERQASLEREQKTLLETAYALLDNG
>O34491_HELPY/6-279 transposon family T2 Pfam:PF01385
KFRIYPNAQQKELISKHFGCSRVVYNYFLDYRQKQYAKGIKETYFTMQKVLTQIKRQEKYHYLNECNSQSLQMALRQLVS
AYDNFFSKRARYPKFKSKKNAKQSFAIPQNIETKTETQTIALPKFKEGIKAKLHRDLPKDSVIKQAFISCIADQYFCSLS
YETKEPIPKPTIIKKAVGLDMGLRTLIVTSDKIGYPHIRFYQKLEKKLTKAQRRLSKKVKDSNNRKKQAKKVSRLHLACS
NTRDDYLHKISNEITNQYDLIGVETLNVKALMRT
>Q9SKS3_ARATH/310-515 transposon family T21 Pfam:PF02992
AAMRWHAEHQSKEGEMNHPSDAAEWRYFQGLHPQFAEDPRNVYLGLCTDGFNPFGMSRNHSLWPVILTPYNLPPGMCMNT
EYLFLTILNSGPNHPRASLDVFLQPLIEELKELWSTGVDAYDVSLSQNFNLKAVLLWTISDFPAYSMLSGWTTQFCKCSM
FEDYLSAKYPCLPEKELYARRAEEYHLWVKEYVSLHQFWFIRKVII
>O68472_ANASP/191-273 transposon family T20 Pfam:PF02371
NLLKTTPGIGQVISTTLVSDLPELGQLTAKQISRLVGVAPINHDSGQHKGKRMINGGRAHVRATLYMGAVVAMRHNPVIK
AFY
>Q9ZUK4_ARATH/203-390 transposon family T21 Pfam:PF02992
EDLQWHFSNASVDGTMRHPIDSLAWAQVNDKWPQFAAESRNLRLGLSTDKMNPFSIQNTKYSTWPVLLVNYNMAPTMCMK
AKNIMLTLLIHGPKAPSNNIDVYLAPLINDLKDLSSDGIQVYDSFFKENFTLRAMLLWSINDYPTLGTLAGCKDFKNDFG
RPLERNNKRKRSDLCEDDEYGEDTHQWR
>Y4HP_RHISN/146-346 transposon family T25 Pfam:PF03050
LSKLGEDVTETLEEIPRRFKVIETVREKFTCRDCEAISQTPAPFHATPRGFIGPNLLATILFDKFGMHSPLNRQSARFKC
EGIDLSTSTLADQVGYATAALMPVFDLIEAHVFAAERLHGDDTTIPIQARDKCTTGRIWTYVCDDRPFGGTAPPAAIYYA
SSDRRGEHPQKHLAGYGGILQSDCYNGFEPIAVAATKAVPI
>Q9S9R7_ARATH/248-397 transposon family T24 Pfam:PF03004
GETLWGTMCDYWDTEEAQKRSKTYSKARLSDRNGLGPHVHYSGPKSFQEIQDELEEKMGRPVPLGEVFIQTHTKSNGTYV
DQKAEKIALAYEQNVREKLSELEAAASAVSDGSSRPRDLTLDEYAAIFLESTEKDARGNPYGLGCLKETL
>T231C_BACTB/97-385 transposon family T11 Pfam:PF01609
IFSALWKSKLCKTSAISSAALTYFQRIRILDATIFQVPKHLAHVYPGSGGCAQTAGIKIQLEYDLHSGQFLNFQVGPGKN
NDKTFGTDCLDTLRPGDLCIRDLGYFSLEDLDQMDQRGVCYISRLKLNHTVYTKNPFPEYFRNGTIKKQSQYIQVDLENI
MHTLKPGQTYEIKESYIGKNQRLFTRVIIYRLTEEQILERRKKQSYTESKKGITFSEKSKRLTGINIYVTNTPWEVVPME
QIHDFYSLRWQIEIIFKTWKSLFQIHHWQTIKQERLECHVYGKLIAIFI
>Q48559_LACHE/96-266 transposon family T11 Pfam:PF01609
HGFNIGKQEIKPDDVVLIDATEVKIQRPKKDKQLIIPARKSSTVLKAQAITDTTGRIIHLDSCQAYRHDMRLLRESRRSL
HRSGLILADSGYQGLDKIYFQAKTPVKSSKKKPLTQQDRELNHLISSIRIKVEHVFGKVKAYKIFSTTYRNHRRRFNLRM
NLICGIINQEL
>P96097_THIFE/70-364 transposon family T11 Pfam:PF01609
LRTQALAITQVRWLLQSLPKPLIVELVVDDTMVLRHSTKAPGAAIRFDHSHKHNRPSYVLAQNWVGLALTLRTRSGKAIS
FPIRLRLVPSTGNTHKLKIAGALLRAFIPHIPVPVRLLTDAWFMRRRLLLPLLRQQRCSRQQFIGQVRKDTVLLRDPPPR
TSQRGRPRIYGNKYTVEDMAALPTEIVSLDLYGKRQKVRLQSIIANARFLNGHPVRAVWSAIYDEKHHRWSPTRLYLASE
TDLTASEIVVLYSNRWQIEPIFHNLKRWWGIHNLWQQKRTVLERWMQIRCIAWSM
>YBFL_ECOLI/81-343 transposon family T11 Pfam:PF01609
ISPAKFHECFINWMRDCHSSNDKDVIAIDGKTLRHSYDKSRRRGAIHVISAFSTMHSLVIGQIKTDKKSNEITAIPELLN
MLDIKGKIITTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNPEHDSYAMSEKSHGREEIRLHIV
CDVPDELIDFTFEWKGLKKLCVAVSFRSIIAEQKKEPEMTVRYYISSADLTAEKFATAIRNHWHVENKLHWRLDVVMNED
DCKIRRGNAAELFSGIRHIAINI
>Q03950_BACFR/126-368 transposon family T11 Pfam:PF01609
LIKALLATGQLKSGQEYDFDFDHQFIETEKYDAKPTYKKFLGYSPGVAVINDMIVGIENRDGNTNVRFNQKETLERIFKR
LEASEIYISRARMDCGSCSEEIVDMVEAHCRHFYIRANRCSSFYDSMFALTGWKTVEINGIEFELNSILVEKWKGKPYRL
VIQRQRRIDGDLDIWEGEYTYRCILTNDYKSSARDIVEFYNLRGGKERIFDDMNNDFGWNRLPKSFMAQNTVFLLMTALI
RNF
>Q54332_STRLI/86-253 transposon family T11 Pfam:PF01609
LAPLLAISPARRPRKDTVYIVDGTLVPTRDRNVAASSKNYRYSTNLQVVIDANSRLVVAIGLPLPGSRNDCRAFTESGID
RACRGAPTIADGGYQGTGLLIPHRRRRGQSHLSPSQEAENAVHRRARARVEHALSRLKNWKILRDCRLKGDGVHQAMLGI
ARLHNLAL
>O87010_PORGI/102-279 transposon family T11 Pfam:PF01609
LNMCCLGQCTGISFIDSTPLKACHIKRAHGHRTMRGWAQKGKSTMGWFYGFKLHIVINDRGEIINYQITPGNCDDREPLK
DGTFTKNLFGKLIADRGYISQNLFDRLFVDDIHMITKIKKNMKNSLMHLYDKVLLRKRALIETVNDMLKNVCQIEHTRHR
SVNNFVTNLISGIIAYNI
>Q9Z9Y8_ACTAC/81-249 transposon family T11 Pfam:PF01609
FRQCIDSEWIFIDGSIVKAHQHAMGASGQNPQAIGKSVAGNTTKIHLAVDSCGNPIDFILTGGEVHDSKAAPDLVALLPD
SEAIIADRGYDCQALRELILTDKKAIPVLPRKRNSKVGNDDVDWCLYRYRHLVENAFALLKQYRAIATRYDKLARNYASS
LAFTCCIRW
>Q57143_PSEPU/65-266 transposon family T11 Pfam:PF01609
VTAQLLRHGFIARGGQIVDATLVPAPKQRNSREENKLVREGAMPANWKPAKRRQKDTDATWTQKHGKNHFGYKLSVNVDK
KYKIIRKFETDTASVHDSKHFDALIDRSNTSRDVYADRGHTSADREGWLKDHGYRNQIQRKGYRNKPLSECQQRRNHRIA
KTRARVEHVFASIEQMGGKLIRTIGQGRANFAMTMMAACYNL
>Q9ZF40_NEIME/40-236 transposon family T11 Pfam:PF01609
INRQLTEKGLKIEKASAAVVDATIIQTAGSKQRQAIEVDEEGQISGQTTPSKDSDARWIKKNGLYKLGYKQHTRTDAEGY
IEKLHITPANAHECKHLSPLLEGLPKGTTVYADKGYDSAENRQHLEEHQLLDGIMRKAHRNRPLTEVQTKRNRYLSKTRY
VVEQSFGTLHRKFRYARAAYFGLVKVSAQSHLKAMCL
>Q9ZA61_PORGI/133-348 transposon family T11 Pfam:PF01609
FNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRY
HYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRA
LTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNL
>Q7BWB3_PORGI/86-344 transposon family T11 Pfam:PF01609
LDVEAFEGAYKRWIEGFISATSGKHICIDGKTMRGVKKLSFDTQSHVVSAFSPQDMCSLAQLYIDRKTNEIPAIHQLLDL
LDLNGAVVSIDAIGTQTAIAEQIIDKGGNYVLCVKANQSLSLQEIEAYFCPLFQKHILLDEQTELSHGRIETRRYESILN
PLEIEANEVLTRWKGLRSIHKVVRKRRDKKSDKTSEEVAYYISSLTDVSSLKQAIRGHWAIENKLHHCLDVYFGHDASHK
RTRNVAQIMDIIQKINLLI
>Q23702_CTELI/37-117 transposon family T1 Pfam:PF01359
YLVQHNRDKRWVKKGQETPPSVPKQDRFDKKVMCLWWNFEGIVHFELVPNGRAVNAELYCQQLERVYDKLKKMYPTLINR
K
>O34754_HELPY/26-134 transposon family T17 Pfam:PF01797
ILVCKYRKKLLQGDLNNFIKSVIDEIATQSNFIIIAMESDIDHLHLMVQYIPRMSISSIISRIKQITTYRVWRDKRFIPL
LQKHFWKEKTFWTDGFFVCSIGEANPETI
>P91717_DUGTI/37-117 transposon family T1 Pfam:PF01359
YFSNPNKENQWLDPGQEAYPVAKRDRFSKKVMLCVWWNFEGVIHFELVANNRAINAELYTDQLDRMYTALGKKYPALINR
K
>O76249_9DIPT/37-117 transposon family T1 Pfam:PF01359
YFKNPKRKKSWVNPGQPSTSTAKPVRLAKKTMLCVWWDQKGGVYHELLKPGETVNTVRYRQQMIDLNHALIEKRPEWARR
H
>O18577_9CUCU/37-117 transposon family T1 Pfam:PF01359
VYNNIKRKRSWSRPGEPTQTTSKADIHQKKVLLSVWWDYKGIVYFELLPPNRTINSDVYIEQLTKLNNAVGEKRPELTNR
K
>Q47028_ECOLI/19-122 transposon family T17 Pfam:PF01797
VFAPKYRRQVFYREILEAECCADHIHMLVEIPPKRRAIGCILRKLCEWKSVRKMSVSGFMGYLKGKSSLMLYEQFGDLKF
KYRNREFWCRGYYVDTVGKNTAKI
>Q8K5E6_CHLTE/157-256 transposon family T12 Pfam:PF01610
YLGIDEKSFKAGQHDVTTLTDLGERRVLEVVEHRTTEATKELLASLNDSQQAGVKAVSVDMWKPFIHAVQELLPKADLVH
DRFHISKYLNEAVDLVRRKE
>Q5KUA9_GEOKA/150-245 transposon family T12 Pfam:PF01610
AVCVDEFAFRKGHDYGVAVMDAETGEVYAVEAGKNEEAIGRVLAPVSGSVQYVVSDLAPAMKKAIQEVCPEAKHVVDYFH
VIQLFTEALDRCRKSF
>Q5X4V7_LEGPA/150-247 transposon family T12 Pfam:PF01610
VLGIDEHFFSRKQGFATTLCDLKKHKIFDIVKGRSEVDLSSYLSSLIGKERVKVVCMDLSSTYRAIVKKHFPNAKIVADR
FHVIRLLQHQCMMTYREL
>Q93LB3_BIFAN/148-256 transposon family T12 Pfam:PF01610
AIGVDEHVWRHGAFGDRYVTVIVDLTPRCDGRPARLLDMVPGRSAQVLREWMQARGGEFTRRVGVVAMDAFAGWKQAVES
VVPHAVEVIDPFHVVQLAAARVTKVRCRL
>Q79IP4_RALEH/154-255 transposon family T12 Pfam:PF01610
AAAVDETSYRRGHNYLTLVADADARKVVFVTEGKDAATVGKFAAHLRENNAAPEQIGVVSIDMSPAFIKGVSEHLPNARI
TFDKFHVVAHASAAVDKTRRIE
>Chapaev3-2_NVi#DNA/CMC-Chapaev-3 523-1815 via tfasty with Chapaev3-1_NVi, 1 stopcodon. [Nasonia vitripennis]
MEVDESYDKESSEDDEFLPAGERIAPQTFTQKxLNDLVRDLGLPKDGAEYLAAALKRKHLLANGTTAYFYRNREKKFRKF
FTNDTENSLVYCSDVKGLVHELKPNVYEDEEWRLFIDSSKRSLKAVLLHNGNTFAPIPIAHSTKLKETYENLKIVLDKIK
YSEHQWQVCGDLKIATLLLGQQSGYTKNPCFLCLWDSRDRINHYVKKEWEKRTNFIPGSKNILHKPLIEPSKYLLPPLHI
KLGLMKQYVKALDKEKDCFRYLQEKFPAISDAKLKEGIFDGPQIRRLFEDANFITSMDNTEEAAWQSLKNVSQNFLGNTK
SEDYENIVDELLENYKNLGCLMNLKLHFLHSHLDYFPENLGDYSEEQGERFHQDISEMENRYQGRWDVNMMADFCWMLQR
DEKTNNKKRNRNPLHRSFEEKRVRYKRRRTV
>Chapaev3-1_OL#DNA/CMC-Chapaev-3 440-1818 via tfasty with Chapaev3-1_AA, 2 frameshifts. (probably has a 100 AA deletion at N terminus (300 bp missing in consensus) [Oryzias latipes]
MASRGCLHPADSFCYVCGQFIKxxTVPHSPDLPVQTPPRQHRPSSGDSSKSDSEADTGDMDYDSADEVGERKPYFPNQKD
VNDLIRDLGLTKSNAELLISRLKQWNLVDDSVQVTDQRKRHQIFSNFFSQRDGLCFCNDVAGLFQAIGIACNPIEWRLFI
DSSSRSLKAVLLHNGNNYPSLPMAHSVHLKEDYTSVKMLLSALKYDDYGWEVIGDFKMVSFLMGLQGGFTKFPCFLCLWD
SRDTKAHYRKKDWPQRTEFSVGKSNVKWEPLIEPHKVLMPPLHIKLGLIKQFVTALDKESAAFKYLQDLFPKLSEAKVRA
GIFVGPQIKKIIECEDFAKLLNRTERAAWSSFVAVVHGFLGNHKAENYVELVQTQQNYAKMGCRMSLKVHILDSHLDKFK
ENMGAYSEEQGERFHQDILDFERRYQGQYNENMMGDYIWGLLRESDSQYNRKSRKSTHF
>CACTA-1_Mlaricis#DNA/CMC-EnSpm 1524-3584 [Melampsora laricis]
MITCLHLIKNISVEAATLCLHVIGAVSTFNTDEKSSQATLPKAMSTFLDGLRIEPKIRRTVCCPKCFSMYYGDKIPTFCT
SQVTPRSRVCSEQLLHEAGIHDGTTPKACRLFSTVSFTDWLARFLNRPGIEDLLEWRDDYFETQGPIMKDVRDASMWHSL
RGEDGQRFTSSPGNLVFALNVDWFNANGNKAASKQISLGTIALVCLNLPPEIRSSQENIFLVGLTPGPSEPDVEQMNHVL
APLVQELKVLWKGVKFSSTAKYPTHGRVIRAMLGPIICDLPAIRKVLGMAGHSSNRHVCSLCLLGTDDIHLLRIPKERRR
CTHTLREQALAWRDAKTITRRKEIFAEYGVRYSVLWELPYFDPLSHTIVEPMHNIFLGIIKNHGTRAFGMKSDPQSAEDP
RNGGASDDEDSETETVASDVYMKDCSVDAASENPDTELGSSPPPPTPEYLSAESNDKLLFAFEEMNLESDTCSMTSPEDY
QAKQEQTESFLEDDAFDEDLSDLEDAYEDELGWRFFDDSQNLATLQDITRNINLPSWVGRVPSTVGTRKGGKLKADEWVI
LFQVMMIPAIISVLHKDQGATDFTEHNFVRNALHLISVLNIVRRLELNERDIGSLRYHLRSYRNGYSKLYSSLPVLPNHH
MALHLPECIQRFGPAPFWSAWLFERLNGKLAKIPNNNHPSKFIISTK
>EnSpm5_SB_p1#DNA/CMC-EnSpm 2273-5526 via genewise with EnSpm1_TD, 2 introns (4811:4868, 5026:5087) and 2 frameshifts [Sorghum bicolor]
MEDRQWMYTGRRSQNRFQHEWVKRTDAFLNRAFGAVAARGHxLVWCPCSNCDNRRRLDKETMGKHLLNNGYTPGYNRWVY
HGEAHRIREEVVRPRLEPFDDDAGVADMLDDIHQAQFAEGRDEEDMEANVEAFYKMLESAQKPLHGHTDISQLDAIGRVM
GLKAELNLSREGFDKMLTVVATMLPKDHVLPNNLYESQKLLRALKMPYEKIHGCPKGCVLFRKEHEDAKYCPKCGASRYL
EAESGDGQKEQLAIPARVLRHLPFVPRIQRLFMTEETAKQMTWHKDGKRYHPDKMVHPADGEAWAHFDDRHHEKADEARN
VRVALATDGFNPYGMMSSPYTCWPVFAIPLNLPPGVAFRRQNVFLSLIIPGHPGSNMGVFMEPVIDELIGAWNEGVWTYD
RATRSSFKMHVWYQYSIHDFLAYGLFCAWCVHGKFPCPVCKEAVRFIWLKKGGKYSSFDQHRQFLPAGHPFRRDVKNFRK
GVVVTDPKPHMKTGAEVRAQIDALVPDEGGGFVGYGEQHMWTHKSGLTRLPYYEDLLLPHNIDVMHTEKNVAEALWATLM
DTEKSKDNPKARVDLATLCDRPKQEMRPPAGRNKNWKRPKADFVLKAEQRREVLQWIKTLMFPDGYAANVSRGVNLTTLR
VNGMKSHDYHVWIERLLPAMVRGYVPERVWIVLAELSYFFRQLCAKEVSRTVAIDLEKAAPVLLCKLEKIFPPGFFLPMQ
HLIVHLPYEARLGGPVQGRWCYTVERALKTVRKKCRNKARIEASVAGAFVLEEVSKLHTLYYTENLPSVHNPPPRYNVDE
NESTLSLFRGQLGRASAPTAKKLTNKEWRSIMLYVFNNLAEVxPYIGEFVRESWHQPRDPTPQESXTLLSRGPGAGRPDF
ISWFKTKVLSKILFLFPRIDELRQVANGCQAFRVKSYTGYDVNGYRFHTTRYEQxRPNRRTTNSGVCTPGTDGLDYHGRV
EDIYELSFYGDKPPMPVMFKCHWFDPRVTRQTPSLGLVEVRQDSAYPGEDVYIVAQQAAQVYYTSYACQAKQELQGWAIV
HQVSP
>EnSpm2_PTr#DNA/CMC-EnSpm 4933-11248 via genewise with ATEnSpm6, 7 introns (7224:7297, 7613:7684, 7785:7893, 8573:9951, 10172:10218, 10412:10726, 11057:11137, 11249:11338) and based on mRNAs [Populus trichocarpa]
MDDRSWMYRRLMDGRLRPEYITGVRRFINFAFSIDKNISGGKIRCPCVRCKNQKFLKEDDVCKHLLTKGFLPCYENWTVH
GEPYVAEPILAGPSSVGISHVVNDVCLENPYRNLVMDAMGVGDAYSNDNVSSPVVAEELPNPEATNFFKLLKAAEEPLWD
GCTKQSKLSACVQLLNMKSTLNLTQTAFNKFIDFTKSCMPNDENLVSNFYDAKKFMRPLGLGYEKYDVCPNYCMLYYGAD
AMKINCDFCGSSRYKPRNPTSKGSNKAEKQLRYFPLTPRLQRLFMSPYHAKDMTWHHFHKSDNGVMVHPSDGEAWKEFNR
VHLSFASDPRNIRLGLCTDGFCPFDMSSNTYSCWPVIVTVYNLPPWKCMTRPFMFLTMMIPGPKNPGKKLDVFLRPLIDE
LKNLWSVGVETYDVYRKENFQLRAALMWTISDFPAYGMLSGWSTHGNLSCPYCMEHSKAFRLKNGGKTTFFYCHRRFLPM
NHPYRCQSDKFLKGVIERLPPLPRPSGLEMLNEVSKYTEGHNGSSSHNDKIPGFGVKHNWVKKSIFWELPYWHTNLIRHN
LDVMHIEKNVFDNIFYTVMDCPNRSKDNLKARLDIQLYCKKPNLHLQQDTSGRVYKPKGTYCLHKKQQQEVLSWMKELSF
PDGYASSISRCVKEAQCKVSGMKSHDCHVFIQRLLPTAFRPYLPRPLWEALTELSVFFRDICTTNLNAQHMELMQMNIIE
IICKLERIFPPSFFDSMEHLTIHLPYEAKVGGPVQYRWMYPFERYMFYLKKKVTNKAKVEGSICEAYLIDEITNFASHYF
GDDVQTIWNRVPRNDDGGLKSLDGCLSIFSYPGKKLSKRFYRRQLSHAEMQIAHNYVIFNCQELKPYLEQCRQELKSQQP
HASDVEIEKLCEEIFPNWLKNNVEYQSNGIENQLFGLAMGPSTSVKCYNGYYVNGFKFHTQSYGRFKKTMNSGVCVKGSC
YDDNERDYYGMLKEVVRLKYLGSKCKLFMFKCNWYDTKRGIRVHRSNGLVEIKHTSRLHGNEDFVLAQQCQQVYYTYPPG
NKSSEWWTVIKTTARSRYNVDMGEFIEDANNVRSFDVDQSDEISQPCRVLPTQTLDDPNILVESSYYEEIGQHELLQLDI
NWGNEDEKEMKMRETVVMREVYVMDGSNERGVCDEDQDGVPSNHGSTSSPYNYDQSVKRKGFDTPIDPITRKKELCLYGT
TEYEKNYLLLCNYLFNISLLLYIFRFNNASCGRAIGDILRSNFKGAWHSWEKVDSMCRDELFKEFKKKYSFPEEDESIVR
NIWEDKARIALNQQLTRARKKAMSKENTTNIIDCLDKGPAWINNDDWNQMIKDVWSTPEFQRRSESARRNRLTKTDGKIS
THSGGTVSFASYRANMQEEAGGKEPPWDDVFSALHQSTKQSGSFVDNKSKKVVENYKMEMISKYGTDRENHPSFDGAAWC
VASGGVTKGRVYGAPRMPKSIVSTSSSSHSYSVESSYPSSSYRALQKEIKDKEEEIKKKDDFILEMKRQMDSMKEYLVNN
LGYHGGTSNIGQGMPPPLTPSMPPPMAPQIMTPMGPTSQPIYRPTPRPLYPDQSCVDPQYHGSSSQPAP
>Chapaev3-1_HR#DNA/CMC-Chapaev-3 460-2135 via tfasty with Chapaev3-1_AA, 1 frameshift. [Helobdella robusta]
MASKRRSCKNKPDVFCYICGEYTLVHNRNQVTCFIKRAYHAYFGIKLGDQDKDWAPHMVCKACTVYLRQWTKGKKTCLKF
GIPMVWREQRNHDTDCYFCSIDLTGINRKNRSSLEYPDLQSARRPVAHCDDIPVPVFHKLQDISDDESSSDEDQETEEEW
PVVDDETPQLFSQQELNDLVRDLSLSKASAELLASRLKEKNLLSGCARITLYRNRHQEYLQFFSEVQDLVYCTDIAQLLH
HLGVPQYKPEDWRLFIDSSKRSLKCVLLHNGNQFASVPLAHSTKLKEKYEAVKYVLEMIRYDQHKWVICVDLKMVNFLLG
QQSGFTKYPCFLCMWDSRDTAHHYTKKDWPVREELVPCRASNVINSPLVDRDRILFPPLHIKLGLIKQFTKALDKEGGCF
NYMCQTFPGVTIVKLKAGIFDGPQIRRLIRDPEFEKSMNKVEQEAWNAFVLVVKNFLGNNKARNYAELVNNMVTAFKKLG
CNMSIKLHYLFSHMDRFPENLGSMSDEQGERFHQEMKEMETRYQGRWNAVMMADYCWTLKRDIPDAEHSRVSNKRKFQP
>DNA-TA-17_NV_tp#DNA/Academ 1365-1935 Small fragment via tfasty with Academ-1_NV_tp, 2 frameshifts and 2 stopcodons. [Nematostella vectensis]
CLHSNFYSCDQTSFFRGKGKTSAWNVWEAFPEVSSALTALSDLPNKETVLASIGTLERFVVLLYSKMSQLSSVNDARKEM
VARRSRLSQREEIPPTFAALLQHxKRAAYxAGFCRAQSLVVQPRPADWGWESSDNGTWRPLWSLLPPMSTCIKLVKCGCQ
PDKGCKRRCRCIKTGLKCTALCRCGGDCEWQ
>Pr85247 mutator transposase [Phytophthora ramorum] 
MAARATDEAKTAAAAAKPRVPTTALPVASQFNRLDEMDLKEAKRLGLLLENIPVSDDAGAPEFGIAYEKKGGTKAAGCAA
DVFVSQKSLQERCKQFAMQRGFQLIVSGSSTRSNGGGNVKYRCKKLLGQQFFDPSTPANQLQCPFYINGYGKDQNWKITR
ACFLHNHYKFIGWRTTPSLPAQVPAHLRAQLRAANPTPAPAAEAVSGDVMIAPGGDETVPLQQQNLLAQAGEPVVITEQP
QQVKRQRNTTMSLKALCRIVTDEVSKFPAANVAMAKLDGKAIRRILLGQGHTINHMMSSRIKRHLEEVRIAKVRTSFQKL
GGYLKIVADKNPGSLFQVETAENGAFKRALFISSAALNAVKYCRKVVSLDHVTHSDELPETAIGKLDDEENDDTICGIYL
KASTKDFNDEVLTFALALVTEENQENWEWFLETLQSTQVVDWNAYTVIAGRTRGLQSAIFTVWPQACHHFCMRRIVEDEL
MTAKKIPMTPDKKQSIFDLARSDSETEYDTLRKALVRTNEAAVTYLDSLDRKNWVKYAFLEAFRRPTFNELTSDLSMSLG
SDELFSQHASASHITWFGEDPVGSSQPLFAFNQYFMKLAEIFHRRRQSVKMRPVLELVPLRDAQLQQILQGSQRCESIPC
ANGLYMVRYLGATRLKIPDSWRHVNLVGWECTCQDWQDQQFPCLHAIHAAELEQRRIDTLYDTKQNSIENYLACYATSFA
PWPMDASPIALDTSLKTPLDFFFSEDGSGRRKPGPRPKRRRENRE
>Chapaev-1_BF#DNA/CMC-Chapaev 1041-5571 (9 introns) GENSCAN_predicted_peptide_1|1081_aa [Branchiostoma floridae]
MSACSTDSQLQEHIKNLAKLCRFCGEFVQTNQDRAKQIKLLSCVEFADKIKEVWLVDVQKDRSYLHPPSFCHRCRCKLYR
KSDTLPTRVSWYPHWYGKTCIPCEKVATLTKGGRPVKKKSPGRPKTQKNEKGKNEKGEKVEECAKTMSEETFSELLSTLD
DFPLDEDRFKPICSLEAYKCGICQCFVYLPVQALCAHVFCFECLHKLFQIAGNNNADCAICKAQIKASDLTSVHRTWRSC
YAQLTFNCRNCCAQLRLDELKYHNECPTNTTQMAAPSHTTAPPLLPGRKYLLMVPHTNTQVIPPPVHVPVPVPPSTPRTV
LTPPSTTMTTTPAPATCPPPSSRDAQPSTSVTSDKVTVGLSEKGPLTPDQQDAFYSMNCRMRSLSPDPRIVEAKTPGQPL
RLMHVPKPRKSSAEAAPSTVRKKARVMEEVRDRVSGGDPGVLLREELRRVPRDELRSMLHQLKFDQVVIPSGHQLEAKVK
IGLNYNQLGKLRSWLKMYNISMESERLTRRAARERLTAYDMHAETLPFCVKGAKKDGSDPTKVQLLPCAYISPVGAAIFD
YLEKCQESECLTWHGGKIPQDEIWVKVGGDHGGGSFKLTFQLLNRDHPNSRQNTVVFSIFEAKDSRENLMLAIGRYAQEL
GDLQGSKWRAKDGKEHTMRVFGTGDYAFLCLWYGLSGASAVHPCLWCDITKMEMNNPESEDRRLSIPPRTLATLQQHYRD
FMEQANGKLSLAKKHHNVIAPVMFALPVDQVIIPGLHISLGLYLRAFKLMETDMHELDLKLQSYLCGVLHEGEVSKEALL
ADVHLGKFRCYVQAIEQARGLDDEADRVEEELHDQENELAWLACCNGTTEKLDEAVFAEACSMVEELVRQKDSLRSKAEE
MRLKASIKKGDGPLTSQLDDLLQTLRVKRQAFHSNSFNGNHDDAIDELTGMVERTVTKIMDKFPDLPLSLVPRATSTAGT
YKELFSRFARCHKLYSHGGPMEETAVCELDKAIKDFMSYYRSNVPNGTVPIKMHMLEDHVVPCIRRWGFGLGFMAEQGVE
HVHALFNSLARPTCTIPDPVARLKSTLTSHLIGVCPTNTIG
>Chapaev-13_HM#DNA/CMC-Chapaev 318-2465 Via genewise with Chapaev-2_HM (1 59 bp intron)   [Hydra magnipapillata]
MSTKLRRLFSGKGLHKYHSFEEKFVECASKMPNSAKTHEDCRKSVCIICMKKGDQVLTDFLKQRIQRLIKNDLSFNDCRV
PLASCQTCRFKLKKLEDGDPKTCKPRLYRFEDIQIKPATRSSNTCDCLICQIGRLKGKETHPLEQKDQPATTSQPPKSSE
KRCTKCLSVLSRGLSHHCTIGSRHENLKQLALSDPKGAEQVASSIVASKEASPGGTIRLSQSSGMHLPIRKGGVVAQELF
PSRLSTGDMVQIQQNTGLSNNGMRKLGSFINHISPTRLVEPNFQKKFAESGQKLQDFFTVSSLKISDSGENRVVVHCKSI
KDLKDRIEEEIGSSKTAFAKIGIDGGGSFLKVSIGVIDEEENNLEPHSPVQKSAKLTTQVSKQTSVKKQFLVAVADDTPE
NYWNVQEIFRLIKLQELIPSEAAVISCDMKLANIICGIQSHSSKHPCCWCDIESSKLLLCGNPRSFGAIRAQHQSFVGSG
GDVRRSKEFQNAVHSPLIFGPDQALILEFIPPMELHLLLGVVNHLFKCLVQKWPKATEWPTSLHIKIQPFHGGHFNGNDC
MKLLRKIDKLAEMAENESTSEPSQFIQTFKDFHEVVSACFGKTLHPNYEEKITIFKNSYMSLGISVTPKVHTVFHHVTQF
IKLKKKSLGLYSEQATEALHSDFGKHWERYKRLNTHPDYSSQLLKCVIDYNSKKM
>Chapaev-2_BF#DNA/CMC-Chapaev 811-5206 (10 introns)  GENSCAN_predicted_peptide_1|1036_aa [Branchiostoma floridae]
MAMSANLGLQDHIENLSKLCRFCGESVLTKADKARFIKPLVCIEYAKQIEELWQINVHRDKSYQHPPSFCHRCRLKLYQP
RPKTITPTRVSWYKHPFGKPCNHCEKVLSISKGGKKPKKKSKAGRPRLQTNDKGAKVEQEQSTPEYSDGNLTEETFAHLL
DLLEDLPFDETKFEPICNLDAYKCGICQSFLYLPVLTPCAHIFCFECIQKSFTISERNMIDCAICKTQILQNDLKPVHRT
WVSCYTQLTFNCKNCSTQLRLEQLKHHLDCSSTTEDESTGAGPPAPPPSVTLTSLQPVQVVYVPIATPVLSTPPNNTAAQ
TSTFTLTNTAGSSAASTSTPSTSSTTSCHCEPGMIPFDPNEDGPLNSQQKKVALSYVHRMMAEAPDKRSFQVPTGGQPLQ
FVHVPRPRKKTSETTSSTTRKRAKMMQDVRDKVSGGAAAAQMKAELQLHPRDELQQMLQELKLDRIVIPNGHLLAAKVGV
GMSWSQIRKLKRWLGKYNIKLPSEKISREIAAEQISGFDITAEKLPFSVRENRKDPFTVQLRPCAYVTSLKDTIFSYLDK
NKEANMLTWHGKIPEDEVWVKLGGDHGGESFKMIFQVLNRDHPNSKDNTNVFCIFNAKDSRENLTLALQRYTEEIRDLQV
SKWTSDGKEYKLKILATGDYAFLCTWYGLSGACGFHPCLWCYITLHQIPEDRENRPLRIPKRTLDSLAADHQRFVQEGMG
KLKKAKEYNNAIAPVMFNVPIDQVMVPGLHIGLGLYKKLFEHLEADLQDIDLKLQSYLESVLAEGEVTKDVLLADEHLGK
FKSFVAAIDEARALDDAADVLEDQIEEQESQLAWLAYRDGVEDSMAEVVFNEACSMVQDLFQQKETLRAKADAVRNKASV
KTGKGPLTSQLDPKLKEFKVRRQEYHGKSFIGNHVHKMLKASTVLVSHLNFLTLQENAINELTSIVVTTINEILEKFPDL
PLSLVPKAHATAEKHKQLFTLFAQCHKKYSHADLMDAEAINELDNAITAFMGYYRQHVPHGTVPIKMHMLEDHVVDCVRS
WGFGLGFLGEQGIEHLHAIFNNINATFRGMMKDEVVQLKAALKDHHIQNSPGHEGGVPDPVPRKKND
>EnSpm7_SB_p2#DNA/CMC-EnSpm 7042-9729 via genewise with EnSpm2_SB_p2, 1 intron (8550:8702) [Sorghum bicolor]
SGSTTTTGTSRRVRGPKKPMEGRLVISEFEEATGKPLGPHSRAFVNHLGYLVRDRIPISVREWKENKKHPEISYVSIRDK
ELLWGDVLQHFTLETNDEQLKERVRDWSMKKMAPMFQGYKKRLYQDYIKKNMTPDFNSPNYAKLRPFWDDFVRFKMSEEA
QERVRKNQENARRKTYHHTMGSGGYQTAVPKWEKAEKELIDRGLVPESLEWPERAKHWFFAHGGSLDLETGKVVYGERIQ
AVAERFHQARSIAESGEWQPNRDKDELTFALGNPEHGGRTRGYGTVSWEHAFPADRETYRSRQRKKEEDRERIRRLEEGL
IKTQEVAQRALEREQALKATMDEKIQKAVEEAVTSRLQSLSQPPAANISPCSAHLKSSCASTEAPARQVDDVGLRFPVDD
VTAPLTSCELHIPEGDGTVKVATGVVSPIDPTKTPTIHSVPIPAGYACVSVDRVVRGRENVPLDIEGGDGEKTLGEAEKT
FICWRKRYIIIPGVPPPQPNPSSAVGHDDDDDVQEKAASPPPAAASPPRRNPTPPAVESPPQQQAPPAPLPPPMPTTTAA
ASSAPAGAASRRKRSSAETQRSLQPPAAKRKALNTKIPKTTKLPYEKTDEEVLAASKAEVKAFFEKCKANRKAEQEPPYL
MYPRSKLRQVVQKMTDANRAASKQPGSTISDYDRTVLKKIKADKRKVQQKVAQLGEQAQQSVQPLVVANEYGSNANLLAM
TIPANVDLDELGNWMEETGLPLEALLGRTDAPIHGGVDDYQSRYIYGRSMCHPEKVRGLGTQIYKLHEYYLRVSSKHIEE
ELIAVRVRDRHYFRGDDVIWIDFSEVHQLLHMNALDKSLMSCYCL
>EnSpm-4_ADi#DNA/CMC-EnSpm 1134-5092 via genewise with EnSpm-1_ADi, 3 introns (2029:2363, 2589:2873, 4039:4206) [Acropora digitifera]
MSDFFGCGFARVAVKLCMLKPDGKVEHNNEARWKRYQCHFESPHNERFAVENRKFYHKRAKILSLNFKRWKTKDKSQYID
HFSHENWKDLPELEKKKHQRVDCQACAVHHYKFQTLFPSWGRKGSTGLQAVVNRTKEHVLKPSNSQNVKPTLKAITKAAH
KIYNEINQPFKELFGMSFAKAQTKTPELGLQEKKSTAQXKKQRREKLRQEKKLIGGEWSKRDCDTMLATRQTYKQRQEQR
LALFFETPDEAENRAAKRKNLEELGVRKRKRHSPNPDDLEFDKDGLLKEVKGMKDGDKINYSDIARRYGVMEQTPLGNMV
IKEFLEANNVPLARFKQFRGKTPAARRRLCRMQGGEISVPQPRTNDQIRETLKSKIESGEYVIGEMIVPQTFKKVILKDG
HVTTETFTVSGRKIPLSDIRERTLKEHEQLGLIRAYTDEYYDAMTREEIMKRLTQLGESAKVSEAAELNDTKEYLKGIER
TRHLMIWADNSTLLNHGYLLITVNVLYDEAVFFTNKEMEEQGKGTIDVQSLVEKPQVYILAQCGSSEAEQLAYINTRKIC
LEGLNNKITTSGGIKMTDVMRLFHGDGPQQEFESGEQKGGHAGCAACSGDARRYSCLAVSLSRPYLSLNDRLNKVRQGPA
GRSNRNGGLKPFKNLRLEELREECHARGLPTEGSKKDLEEIFKEEMGGIQRVPAMMFFDQEKTLDDVNLGKTKRVFVLDA
YXNKKYIIXRDIFKNKLYTELPVLNSFCILTSIYLPCVNVIKVNVQSLLDSLTELSKLLYQTAESRSPRQVLCLHNTSFL
HAMPCKEVIGQPKVLTSRKFYGRYWHSLTSHAAKQNRIISGRSTNTEEEERHFNSLRGITKLTNRRPGDIITPSLVRFQA
EQQMASTRQFNSVKAQESEISKYYKALPLFPNTIIPHRYILRNPKEYQVHLESISDFLCCGEGVWWQHIVSGVEFLDGPQ
EPNFKPQGPPLHHFRSSNLKLEEQQLKQCWLKCLADETKIPHRVIRLYDDSGNCIXXXXXPRNNKCFLNHHSKQVPVSLS
KLHIKINIGLPKSTFSN
>EnSpm-2_PGr#DNA/CMC-EnSpm 6759-9409 Fragment via genewise with EnSpm-4_PGr, 1 intron (7205:7649), 2 frameshift [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
LFEEDFSKQVMIQMAESVLKNKLSKAGAXSFLKAARENVSFLGKLWSSKGRVIHTADLIQQIPKTRDAVFHRLGLNPEIT
TQICCKKCFALYPLSNSDTDPPAKCTQSFLSQYQGYCKWAKSQAIEPTCDQDLLELDKQHKSKPIRTYSHVTMKSWLKAQ
LSRPSFESLLDSSLSAASWDPLQDMEDVWHGRVWQEFPNLDDGSGIYTEKSGNLVFSLYLDWFNAEGTSNLGKHNSIGAV
ILICLNLPPEDRYKVENIFLFGIIPGPKEPSLEEVNHLLRPLVNELKDLWTGIFFESTASHPQGRIIRAAIFPLIADLPA
LRKAAGFGSHSSTRFCSFCMLSKHDLEEIDKSKFPLRKNEEHRKHADAWLELQNATERKKYVKEHGARWSVLNELPYWQP
IEFCSIELMHALILGDLKDHTMRFLSLPSAGSKLKDMQEKDTEWQNDLSYTEHPFDNQPGPKTKAKRKLEAAEEENPSKR
RHTTANIGGEEDQTDRGNRSCSGSEGNSDASTTHLYQLRIRKRVACDLNEEVTTDSDDDCGSDHTATRAQHRTRRDADSP
ITDMGQPKILPEELNIVRRTILHTIVPSWIDRVPRNLGLASHGSLKAAEWLILYKVYYPIALIPLWTKSQKESATEESKQ
RISSLLESTTLLCKIAHFLTLPKIQIKDLDELDQLIFEYRQVLQKGWPALASTPNIHVTQHYSDNIRRFGPPRSTAAWAQ
ERVNGMLQKLPTNHH
>EnSpm-4_VV_p1#DNA/CMC-EnSpm 1408-3879 (may have more exons) [Vitis vinifera]
MENRDWMSKDRRSVEYDEGVENFINFALAHSTNHTSIKCPCLRCGNLLCQTPQVIREHLFFNGIDLSYRVWYWHGEKGPS
GGFSNVSQQRYDKCEYNDVADTIDMVNAAQVNCMNDPQVFGRLLEDAEKPLYPGCMKYTKLSALVKLYNLKARYGWSDKG
FSELLQLLGDMLPLNNEMPLSMYEAKKTFSALGMEYQKIHACPNDCILYRNQYKDAIACPTCGKSRWKINNEGGKIKKGV
PAKVLWYFPPIPRFKRMFQSSETAKHLMWHAKDKECDGKLRHPSDSSAWKLVDHMWPDFASEPRNLRLALSTDGINPHKS
MSSRHSCWPVILVIYNLPPWLCMKRKFMMLSLLISGPRQPGKNIDVYLSPLVDDLKTLWEKGVETYDAHLXEVFTLKAIL
LWTINDFPAYGNLAGCTVKGYYACPICGEGTYSKRLKHGRKNSYMGHRRFLPRNHPYRRQKKAFNGEQDFRIPPKILSGE
EILEKVDLIPISWGKMKIKSLESDVNTNCWKKKSIFFELEYWKYLHVRHNLDVMHIEKNVCESIIGTLFNIPGKTKDGLN
ARLDLVEMGLRSELFPRVDLKKTYLPPACFSLSRNEKKLVCQTLSNLKVPEGYCSNFRNLVSLEELKLFGLKSHDYHALM
QQLLPVALRSVLPKHVRYTISRLCIFFNKLCTKVVDVPKLNEVHNELVVTLCLLEKYFPPSFFDIMLHLTVHLIREVRLC
GPVYFRWMYPFERYMKVLKGYVRNHNRPEGCIAECYLAEEAVEFCTEYLSGTHAIGIPKSNNYDNKFGRPITGGRSTNID
HKSWLQAHHYVLENTTIVQPYIE
>EnSpm-6_VV_p1#DNA/CMC-EnSpm 5418-7715 (may have more exons) [Vitis vinifera]
MDRDWMWLPNRLSRDYVEGVKSFIQVAKEHLRWDNKTRCPCRDCQNARFNDLLTIERHLIRFGFSRSYQKWIFHGEEHES
QPNEQNDIGVDTEIVDATDADILNEVVDALNDACGHIDNDINLEESTTHGKFDYLLGEANKELYPGCKKFSALTFLVKLM
HIKVLNRWSDKSFDMLLQVLVDAFPERSNIPKTYYDAKKMLRDLGLGYDSIHACKYDCALFWKENETLDKCPVCDEPRYK
FCNGKGKKIPQKVLRHFPLKSRLQRLFMSRHTTSDMRWHKEKRISEEGVLRHPADSEAWKDMDTQFPWFSQEPRNVRLGL
ATDGFNPFGSMSNSYSMWPIVLVPYNMAPWRCMKEMFFMLSLLIPGPQAPGRDIDVYLRPLIEELKELWHEGVQTFDVST
GENFRMHACVLWTINDFPAYGNLAGWSTKGYKACPVCNEDTSSLGIRSKICYMGHRRFLPLDHGWRRSRQHDGKPEFRPP
PRMFSSDEILQQLCCLKHRKPGKHPNNVDRKRKRVPEELNWTKKSIFFELEYWSKLKLRHNIDVMHVEKNVCDSVVGTLL
NIVGKTKDTNKARLDLADMNIRKELHLQIQGNKLVKPHACYTLTVEERKEFCKFLKSVKFPDGYAANLSRNVSINDGKIS
GLKSHDCHVLLQKLLPIAIRPYFNKDLCTTLVELCSFFQKLCAKTLYVNDLEKLEEGIVLILCKLERIFPPAFFDVMVHL
MVHLPREAKLAGPVSYRWMYPFERYIFTFFCLLIFSSNYVTQYMC
>EnSpm-5_HM#DNA/CMC-EnSpm 287-2269  [Hydra magnipapillata]
MSSYLKRWRNQNKEINKSLMQELNIEDTARNFDSENNVIVNDNVENDNNELHFTGDDNNDNIIYHYASDISACNEDVNRN
APLLGRVPSSNEKCQLSSNDESDVLSRDLAAWATRNRCTRKTVNELLSILNKNGVSSLPHDCKTLLKTPRNIKTKVLCGG
EYIYFGIKKGIKQVLKDSLKVIERIDMLINIDGLPLCKSSSIQFWPILAKFSESQPFIVCLFCGKKKPDNLFDYLRDFLT
EFRLLQVSGIEFNGKILPVSIKGFVCDAPARSFLKNIKGHGGYHSCERCLIEGEYDGKVIFTEVNCQLRSDEQFKEYIYL
NHSLGTNNVCCDPHQLGRTPLVDYGILCVKEFAIDYMHCVCLGVMKRLLKFWLEGPRICRLSCQQKKQISDKLAFYHGKM
PSEFARQPRSLDEVKRFKATEFRQFLLYTGPIILKDILPKDFYQNFLCLSIAVSLMSNSNVVKRQHYLDYAKKLMSCFVL
NLQRLYGSQFYSYNVHALLHLHEDVSYHNCSLHDLSSFPFENFLQIVKKFVKTANKPLVQLAKRLSELESSNVSYGSKTI
TDKIIPNDRDGWFILKSNEIVRIIEIVSDTEFDCKVIPFHAIDNFFTIPCNSSDFGIYKISKFNKMKRKFVILSDICYKL
VCLEQDNDFILIEVNHEIIY
>EnSpm-2_NV#DNA/CMC-EnSpm 4137-6509 [Nematostella vectensis]
MWSRKEVSTCSCTELSYRHVHCRCYRCKGRAVTRKTELRHWNEARISSSFHNSKEDEAFGQNTFEEHETSDVTMETSENI
DCEINVVQDVCMNHDNENRNDMEDDFNQGNPYKRLVVKAVLQAMTIVDNSGCSIKTFEDILSYGRTMLFTNLDPEIDEDI
LASLWPKSWSEVQSLLKEEGFTDPKEYYICICRAEKSFTRNGKTTKKYLYSRKWGIMESKNELCPNCGKCGYIKYYYLGL
HEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSWPLKKEVWDGEIWLEVQWFWDPDQLWTVPTRCGECLTVISSDLINSS
PKDIDGLSLLECPECFNKFSHKAEVARGSPLNLALIGHWDGWQPFSTSGRSCGSLEVSILNMFKTDRSHIDEVYVIGFVP
CTTVPKGVPEAYDPFIQPLINDLCDGFIHGFEVPYPSNAITVPDYEAHEIETVRVMLLCWAADHPGQCEFGKYLNQGKCA
CRRCKMVGQQSLQSTHYYYGDNRFHARHPWEKRDVTAEESTFYDLDNENRVSVRKKLSSQEGFTGTPIFHQYLYPLYKFD
CLYHMVYDIFHTLPLNICKNQLSRLLQLELLDAVYVDEQIAQFPWNTEFKQGRIPTSIGKEHKGLGHWKAESFQKFFFPM
LGCIVEDKIPDPKELEIISLVSYLTELHFYSGRNGWTDSMIQLHERLAQTLIIRIEETQGLEMCTISVHNLTHAHEDLIN
FAASDNYWCAVFERAVKKYVGRSHNCKGLEMTFAKAECRRESLKSLEQAHGDLPIEEKDDKIEVCTVSSM
>EnSpm-1_HV_p1#DNA/CMC-EnSpm 3035-5419 (may have more exons) [Hordeum vulgare]
MGKHLQMSGFTPDYTVWTFHGESAQRNRVEVVRRRTDEYGTGIEDMVQDFDDARDSDDEMEESAKAFYEMLESSKRPLHE
HTELCQLDAIAQVMALKAQFNLGRECYDAMMTLFGRFLPKGHVMPANLYQSDKILRALKMPYEKIHACEKGCALFRNEYA
DLNYCPICKSSRYVVVDNGMGEKRQTKIPVSVLRYMPIVPRLQRLFMVEETARQMTWHKFGKRTELDADGNLMMVHTSDG
DAWKDFDGLHEDKAADPRNPRVGISTDGFNPFGMTATQYSCWPVFVIPLNLPPGQIMQRKNIFLTLIIPGPNYPGKNMNV
YMQPLKDELEEAWDNGVKTYDAARKENFKMHVWYMYSMHDLPAYALFVGWCVHGRFPCPQCKAALEFHWLQAGRKYSCFD
LHRQFLDPDHQFRKDKKNFIKGKVVKNSAPPALTGQQILDQLNALEPDPERPGYFKGYNSKHAWTHKPCFWDLPYFKDLL
LPHNIDMMHTEKNIAEALFGTLFGIDGKSKDNTKARVDQETLCDRPLQNMREPKGKQNWSKPKAWFNLGRPAMREILLWV
QKQLMFPDGYAANLKRGASLEKLKIFGLKSHDWHIWLERVMPVMLRGFIPEDEWLVLAELSYFFRVLCAKELSPGVVEDM
EELAPELFCKLEKIFPPGFFNPMQHLILHLPTEARLGGPVQNRWCYATERMQKTLRGKCKNKRRIEASMAEAFITEEAAN
FVTAHYEAKNHHLHNPKPRYNVGDPKKGGSNLSLFKGKLAPAGVSQPISLDIEEWRTISLYIFNNLIEVRPYIE
>EnSpm-1_DDi#DNA/CMC-EnSpm 999-3515 [Dictyostelium discoideum] 
MNLNNISCINCREKLKNFKNIIIHYIMHKNICPFCLAYYRSYKQFYDVNGHFNTKKCKNEQNKIITNNQKRDSFYKKLMD
ITGEKIKYPTNDPDDPCKHLCNQNQDEIFYQENNENNENNQTIDNEENHDIIGLVHSEDENNEIRIDENEANINNENNEN
NENENAQNEPINNNLNNNLDNEKSKKKLNETEIEFLMLGIENSISLKLLEKFKSFIDKNKTNLNQIRYTPQYMDKLFMED
FQIKGETFINKNYDHSIFYFEIKKVLETLLNKKQFFERIDFDTDFETGIYTNYKSGQQFKDLKNKNKNKIVLLRIFTDSM
QCQNKKDYTIMLDIENYIGNEFKNNKLLLFVVPNDWLLNFHQTIRALFSSFIGNGFNLIIENEQIDVVPFGLTMDIPEFR
ASCKLNGHNSNEYACHTCDKPRDGLFICKSGTLRKQEDITNFHSTKPNYAELNADIELKKVWEKKAKDIGIKGVDRGWVE
PLSINYLKTQPDILHNILLGVAQRCLNYIFDKYKNKIANFLNNLKNAKIIDNKPKPSISLFANKTRKGRENRSILYYLLI
SIKNQISNDDFLIMEQLVTICFKLYSDSFDENDLNSLQVLIESFNAKVNLITETEIMNFHLLLHYPIYIKNWGAPKYTSA
ETFEAQLSRIKNYLNNNTNNRDEQYERVTKLNMVKFFNSVDKLKSIEPESTALIIGNKIKNPDNLDNIKIKLDSLFQNYK
NITFHSSIKNNKEIYNVGDAVEVASDNELSGRWSGIINSISMIEMDDNIIKHAILLNYFDKYVGDQFNKYHFLSNELNYI
TYDNILNNVIPIQIDDTNYLIIYKCHDKFSASKNKKSKN
>EnSpm-1_Mad#DNA/CMC-EnSpm 569-4151 via genewise with EnSpm2_PTr, 2 introns (2797:2897, 3295:3413) [Malus x domestica]
MDRQWIHNHNRCDVEYLDGIDEFIEFATRHNLGSTHIRCPCRRCNNSMWETFENVRFHLVRNGMMETYTTWYHHGERLDQ
ASSSYVTRVETVESNVDPNEQVMNILNDVYPYASSNTNQEGGDDGRPTMDSEAFKNYEKLLKNAKQELYPGCENFSVLTA
IVELMHGKIKFRLSNKCFDYFLGVIKRMLPKENCLPEDHKSAQKVLKGLGLGYEKIHACVNNCILFYKENKQLDKCPVCN
EPRFKMTSQNRKTKIPQKVMRYLPLKPRLQRLYMSMHTATDMRWHKEGRVNDDVMRHPADGEAWKEFDRMYPDFAADPRN
VRLGLATDGFNPFGVLNQTHSTWPVVVFPYNLPPWKCMKKEYMMLTLLISEDPGKSIDVYLRPLVDELKDLWENGVRTYD
KYTGQMFTMRAAVMWTVNDFPAYAMVSGWMTKGYLACPICKENVTSSWHARKVCYLGHRRWLPWDNEWRQNDKAFHGTKE
TRPRPREWSGDEILDQLNRLEFGHFGKGVSKPRPTTHLNWTHKSMLFELPYWSKLKLRHNLDVMHIEKNVFDTLVGTILD
IEGKTKDTIEARLDLERMGIRSSLWMKSVGGTLKKGHPFFTVKPNGKKEFFNFISSVKFPDGYASNISRCVNVKGCKFSN
MKSHDCHVILQRLLPVGIRHLLPLDVVKPIVLLSRFFSQLTARCLRKSDVKQLQDDIVNVLCKFEQIFPPAFFTSMIHVM
IHLPDEALLAGPVNCRWMYPIERYLGELKKCVRNKAKPEGSLVEAWVAYESLTFCAMYLEDVETAFNRPQRNNDGGVRKE
KLSVFAQIARPFGDPVKGESFTKKDMEVAHWFILNNCDEALPYLEEHEQLMKREHPSHLYAKKHRDLFPSWFHAHELNSP
SYDEELYNLARGPLHVELFSGCHVNGIKFLGATRDDKLSTQNSGVHVPGAGDSEDIDFYGKLTSVVQLLYKDRCQVILFK
CLWFDTNPHNRTSVKRDHGLLSVNTTRRWYDEDPYILATMAKQIFYLDDPKAGNGWKVVQKIDRRGLYDIPELDHDDNDD
NVADQQLSSSIEIGEETLRDTNIVQEPFDVPGVPEFEISIDLGDLPQYNAPEEANEDEDEWESGNDSSEDSESYYCSSDE
D
>EnSpm-2_Mad#DNA/CMC-EnSpm 1464-5115 via genewise with EnSpm2_MT, 3 introns (3731:3820, 4130:4218, 4325:4425) [Malus x domestica]
MDKSWLTIPRNxEAYTAGINLFLDQAVANGVGPDKFRCPCKRCCNRYTFVRNTIVEHLILYDMDKDYKNAWWRHHGEQNI
GEQNVAIGEEETGDEVTGMHDFLNDVFVQPLTEEGVGPSTEPPIGEGRPEEVETFFRLLEEADQDLWPGCKEFKKLEAVV
RLYQIKCLAGMPDEIFTTLLELIKRMLPEGDCLPESCYKAKKLINDLGLTYVKIDACPNDCMIYWKDTSDLTVCSVCGES
RYKITNAEDSSRKKIAAKVMWYFPLKPRLQRFFMSKHTAEHMRWHATECPKDEFMRHPSDSPAWKHLDNLYPDFASEIRN
VRLGLASDGFNPFGKMRNDHSTWPVVLSVYNLPPWMCMKQPNLLLSLLIPGPRSPGKEIDVYMRPLIDELNELWEVGTPT
YDAYSNQSFTMKAAVLWTISDFPAYGMLSGWSTHGYKACPHCMHDKESIYLPASRKICYMGHRRFLEDNHRFRRQTTTFN
GRREHRSAPRQWTGLQCLEELSTLRFTFGKPKKDASVGQRRKRTSSSTSSNSQWKKKSIFYELPYWRHLLIRHNLDVMHI
EKNICDSVVGTLLDIEKSKDGLAARADLEVLNIRRSQHPRREGNRTFLPPALFTLKREEKTAFCKVLSTIRVPDGYSSNL
SRCVHVNERKIHGLKSHDCHVLMQQLLPLAIRPVLPKAVTMVLLELSAIFRQLCSKKESEEGFKQLNSRIALTLCQLEKI
FPPAFFDIMVHLPVHLADEAALAGPVQYRWMYPIERYLQTLKRYVRNKGRPEGSIAEAYLVDECLSFCSMYLRDVESRRT
RRGRNEDGIGRGVSGGLSIFDSKGCYMGSGENVELDLNVLDQCHRYILNNCDEVNPFRRQHEEFLKTKHRRERLTMRQIK
ELSKKEFPEWFKQHMNSRCHANDTLISQDLRWLANYPSRVVSRYKSHIVHGFRFRIKSVDDKHKNQNCGVFVPANVPGAI
GQVNCYGRVVDMFEVKYCGPAEAGDRGRAVMLFKCEWVNSESPRGMKTDQYGFTMVNFNRLGFKEDPFILASQALQAFYV
EDTIEKDWHVVVRTQPRDLFDVLEDSDAIDDYAIPNLDDRILDXENFHTRVGVEETPFHESLPLPTQFASHANADDDXTD
DDME
>EnSpm-1_NVi#DNA/CMC-EnSpm 1707-3558 via tfasty with EnSpm-1_AA, 2 frameshifts. [Nasonia vitripennis]
MIKDINFFKPLSISADVSQGELLLMVLKYCLSNNTSVSAMSNLCRMINTIFQTEVMPNSRYFLDQLFDSMDKVEFHAVCP
NCTAYIGQFNEIRDVKSCHTCTSELNLENPSNTSFFVLMDPSSQIRDLISIYQDHYDFVIKERVPETNFLNDIYDGKEYR
KFVRSLPEQQKTNYISSVFNTDGANKFKCSQFSIWPLFLMINELPRQQRMSKLVNCGLWFNKNKPDMSVFWAPFVEMLNK
ITKNGITCVIKGEERVLNLHIINCCVDSVARAPTQGIKQFNGKCGCSWCYHLPYSEKSIVPRDHQTTIHEMMLATPDNPV
NGIKNPSALINLPYFNIISGFVPDYMHCCLEGVAKQITEYHIASMNNDDITEIDYKINQITAPHQISKLSRQINLRDKWK
AREWENYILYYSAVVLPEHLTRNHYYHWLLFVESMYILLQEKISIEELNRADEMLHEFVAKTEQYYGQKAMTYNMHQLLH
LSQSVLNWGPLWCHFTFSFESGNHVLLKAIKCSKGVTQQIIRYIKMNHALTVLQEFAYPRINELVKLFCADILQSHVQNC
YKISDVTYVGKGDSVDNPLLLNFNLSIDAAAHHKIIKDGCLYESNKREKKGQTIHSYY
>Q9HM87_HALSA/324-393 transposon family T35 Pfam:PF07282
FHKFETFVSYKATWREIPMDTVDAYYNSKTCSCCGERGSRQGRRFRCTNDECVVVQDHADRNASVNIAWR
>Q9V1M1_PYRAB/302-369 transposon family T35 Pfam:PF07282
FLGIQKAIERKAKEYGVPVIKVNPKNSSRLCPIHNAVVKYESGRFGVCSVGGEVWHRDILAVWNLYLR
>Q9HHJ9_HALSA/326-393 transposon family T35 Pfam:PF07282
FKKFTERLACTAEEYGISVEVRSEAWTSQECPRCGSTDRTTRHQDTLTCPCGFQGHADLTASETFLER
>Q8KNE3_MICEC/292-362 transposon family T35 Pfam:PF07282
WAEFRTLLTYKAHRDGRTLAVVDRWYPSSKTCSACGHLLATLSLGTRHWTCPSCGTRHDRDVNAAKNITVA
>Q93S53_MYCCE/356-426 transposon family T35 Pfam:PF07282
LAEVRRMLGYKTRWYGSRLEEADRYFPSSKTCTGCGRRKPNLTLADRVFDCEHCGTRIDRDLGAAINLARL
>Q9X0B6_THEMA/300-366 transposon family T35 Pfam:PF07282
FRKLIEMIRYKAEQFGIEVKLISEANTSKTCPVCGAKNKPNGRRYHCKTCGFEYHRDGVGAINIWKR
>Q93TH7_RHIME/6-113 transposon family T34 Pfam:PF05717
TGVRVYLACGATDMRKGVEGLAALAQDVLRQKPTGGAVFAFRGRRGDRLKLLNFDGQGFCLYYKILERGRFPWPSAADGT
ARLTTAQLAMLWEGIDWRRPDWGAPPAR
>Q8X4X4_ECO57/6-116 transposon family T34 Pfam:PF05717
SGTRIWLVAGVTDMRKSFNGLGEQVQHVLDENPFSGHLFIFRGRRGDTIKILWADADGLCLFTKRLEEGQFIWPAVRDGK
VSITRSQLAMLLDKLDWRQPKTSRLNALTML
>Q93TE3_PSEYM/70-178 transposon family T34 Pfam:PF05717
RIDSIWLATEPMDMRAGTETALARVVAVFGAAKPHCAYLFANRRANRMKVLVHDGLGIWLAARRLNQGRFFWPGVRHGSE
VELDAEQLQALVLGLPWQRVGSGAAITVL
>Q8U235_PYRFU/288-354 transposon family T35 Pfam:PF07282
FRKLQRIIEYKAKLRGIKVIFVNPAYTSTLCPICGGKLSPNGHRVLKCKCGFEADRDVVGSWNVRLK
>Y85A_METJA/6-82 transposon family T35 Pfam:PF07282
AKKFLGYLKNKCLEFGVKVIEGNPAYTSIKCPNCGSRLSQLYKLADERALPSRLMYCFDCGFYADRDTVAVFNLIKR
>Q9PFX1_XYLFA/291-361 transposon family T35 Pfam:PF07282
FFEFRRQLEYKAMMRGGQVVVANRFFASSKRCLTCGHTLNELPLSVRQWACPACGARHDRDVNAAVNLKNM
>Q48910_MYCAV/74-171 transposon family T9 Pfam:PF01548
LLSAKAEVVYVPGRTVNTMSHAFRGEGKTDAKDARVIAETARHRRDLSPVVPGEDLVAELRSLTAYRSDLMADWVRGVNR
VRSMLTAIFPALEAAFDY
>Q48667_9LACT/1-74 transposon family T8 Pfam:PF01527
MQKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLELKRQLAKVKEERDIL
>YIS1_STRCO/76-174 transposon family T9 Pfam:PF01548
ARDAGCKVAYLPGLAMRRIADLYPGEAKTDAKDAAVIADAARTMAHTLRSLELTDEITAELSVLVGFDQDLAAEATRTSN
RIRGLLTQFHPSLERVLGP
>gi|56547708|gb|AAV92925.1| (piggyBac) piggyBac transposase [Phytophthora infestans]
MVMVWLCQPCRLKYDGQIPLFKQNITYQIEEDVVCRGVKHYVAIHQNSAEFGESWSALCSMVPKYTNIPQLTDEFDEVQE
SEYREWSVFRSQKELQIDLCPAEVELIQGMTFSPTASLDEVPGLFAHPDGSTTTKLREESKHLFGKSASSSFFAFIPISF
WKQVVTFSNGRAAETSGQLGAPIELEELMIFLGIQWYMTLVDKGEMRNYWFDNEDSNIFPGQSSTSLATVMSWKRYLYIR
KILSFRPRTSAEELSSDPAASIRPLITILKIRCCRHVIPGRDVAVDEASIASKSKYARHIIVYNPRKPTGKYHFKLYVCC
CSTTWIVLDFKLHCSSDLKNRLANVISPAEIDRLAALTEKSSEIRKHVIEVTNSLRGSRRVVNTDNFYTSCLLLESLRTV
GLYGRGTVRSSSKHFPRYTMVGSTDTKRGTMKQGVCVEKHIVAASWVDGSVVNVISNADDSGTTTVYRRIRQQREPFKAP
KCVSEYNTAMQGVDRHDQLRGRFSVANGHTFKKWYKKLAMAMIDIARCNAYICHQMARRSNHSGFSDGEDSPESSRRDEH
RAFVASLVREMFDGTWKESLSDDDGMLFANSNDGPTSSLCHAANTAVSSGTNDVCVARESWIALKDRSRAIRECTVCRFE
CRNPTQKTDYCEKHKAALCKRTYPIDKSKPHLCQEASWSCWQKYHGYYLPNLVYNLEGHLMRSSSIYKMQAPFLRSKASK
RTTR
>Y4UE_RHISN/151-250 transposon family T9 Pfam:PF01548
LIERGFKVNAINPKQMDRFRDRFTMAGAKDDSRDAEVMASALRTDPRCFRLLAVSDPVVIELREWSRIAEDLSAERNRLT
NRMREQLWRYFPALLELEND
>O31103_ENTFC/3-84 transposon family T8 Pfam:PF01527
KRTRRTFSQEFKQQIVNLYLAGKPRVEIIREYELTASAFDKWVKQSKTSGSFKEKDNLTPEQKELLELRKRNQQLEMEND
IL
>O68533_PSEAC/1-974 transposon family T7 Pfam:PF01526
MPVGFLTQEQRDGFGRYVDSPSREELERYFHLSDEDREAIQVLRGNHNRLGYAVLLTTVRFVGVLPDKPAAVPVEVLQVL
CRQLAIPDPDCLQRYSDHRRWIHATDIQNRFGYRHFTDPGIGFRLSRWLYALCWTGTDRPGVLFERATSWLFTQKVLLPG
VSQLERFIAQLRSRVEERLWFTLGRSVTEEQRLQLQDLLTVAEGNRSSRLDQLRSGPVMVSGPALIRALRRLDDVRGIGI
TLPAAAHIPPSRIAALARFANTAKVTAINRLPASRRMATLVAFALCLEATAHDDALEVLEALLRDLFSNAEKADKKARMR
SLKDLDRSAATLAAACKVVLDSSISDDNVRARLFNDLPRTTLEKALEEVNALIRPVDDVYFLALEARYRSVRRFLPDLLK
HIRFGFSPAGKGVAASLEWLQLNLPRRKPEDDAPQEIVAKAWQKHITREDGSLDMGAYVFCTLDALRTALRRRDVFVSPS
WRYADPRLGLLDGAEWLAARPIICRSLGLTIDAKTTLDALSVELDATWLAVAARLPDNPAIQLSENTEGKTELSLGALDK
LDEPCSLLQLRAAVSDLMPRVDLPEILLEIAARTGFSEAFTHVSERNARADNLVTSLCAVLLGGACNTGLEPLIRTDNPA
LRRDRLSWVSQNYIRDDTLSAANAILVGAQSQLELAQVWGGGEVASADGMRFVVPVRTVHAGPNPKYFGTGRGVTWYNLI
SDQFSGLNAITVPGTLRDSLVLLAVVLEQQTELQPTQIMTDTGAYSDVVFGLFRLLGYHFSPRLADVGGTRFWRTRPDAD
YGKLNGLARQSVKLDLIAEHWDDLLRLAGSLKLGRVPATGIMRTLQTGDRPTRLAQALAEFGRIEKTLHTLTYIDDESKR
RATLTQLNRGEGRHSLARAVFHGKRGELRQRYREGQEDQLGALGLVVNIIVLWNTLYMTAAVERLKQHGYPVLEEDLARL
SPLIYEHINMLGRY
>Q27293_DROME/51-119 transposon family T5 Pfam:PF01498
DRRIVSYSKVYRFASFRDIKSELNLGISDVTIRRRLLNQNFSARSPRKVPLPSPRHIKARLSLAKTYLN
>Q56407_LISMO/1-953 transposon family T7 Pfam:PF01526
MALKKILTAAQREQLLSVDHLSEEDFQAYFSFSDSDLDIINQHRGDINKLGFAIQLCLARYPGCSLSNWSIQSDRLISYV
RRQLHLDSIELALYAHRNTRANHFNEILETFRYQRFGSVDTRNQLIAFLIKLALENDDSTYLMKKTLGFLTQNRIIFPSI
ATLEDIISHCRDKAESTLFSILLDSLTETQIEKLDELFLVYKETKMTKLAWLKDIPGKANPESFMTICKKVETITVLELG
TINVSHIHRNRFLQLARLGDNYDAYDFSRFEFEKKYSLLIAFLVDHHQYLIDLLIEINDRILAGIKRKGMHDSQELLKEK
GKLATEKLEHYASLIDALHFAKDNDSNPFDEIERVIPWHDLIQDGEDAKRITGKKNHGYLEMVRNKATYLRRYRGMLLKI
LSFKATSSAQPILTALTQINELKNDGKRKIPANTSIEFVSKKWERLVQPEEGKIDRSFYELVAFTELKNNIRSGNISVEG
SLAHRNIDDYLISSDACVNSLTIPDTFDDYLTSRGAILDSQLQYYSNSGKSSAKMVLKKLEKVTPDEAEEYRKKLYSMIP
KIRLSDLLIEVDSWTQFSQEFIHDSTGNPPNEREKKIVFATLLGLGMNIGLEKMAQSTPGITYPQLANTKQWRFYKEALT
CAQSILVNFQLGIPIADFWGEGKTSASDGMRVPVGVSAIKADVNPHYKSLEKGATMIRSINDRNTSHHVEVVSTNTREAT
HTLDGLLYHETDLDIEEHFTDTNGYTDQVFGMTALLGFHFEPRIRNIKKSQLFSIKPTSEYPDLLGLISGRINIKTIDES
YEEIKRIAYSIQTGKVSSSLILGKLGSYARKNKVATALRELGRIEKSIFMIDYVTDDSLRRKITHGLNKTEAVNALAREL
FFGRRGKFMERDIRRQLQSASALNVLINAISIWNAVYLQEAYDYLVKIDPEVTNYMNHISPINWEHITFLGEY
>TNP5_ECOLI/1-966 transposon family T7 Pfam:PF01526
MPRRQILSSEEQERLLVIPDDEIILTRMCFLNEQDIALINKHRRPANRLGFAVLLCYLRGPGFIPDKSNVPHSSVISRIA
SRLKLQPDLWPEYASREQTRWEHLTELYRYLKLSPFSRSLQKDCIRHLHPYAMRTDKGFMLAEEMLNWLHSNNVIFPSVD
VIERTLAEAVTLADRAVFSALTAQLEKQHKSALDSLLKSEGEQASRLAWLLQPPGKINGKNVLQHIDRLNSIAALGLPDG
ITLSIHQNRLLKLAREGRKMSSRDLAKFTDVRRYATLVCVIQEAQATLTDEVIELHERILGTLFSRAKRTQAERLQLTGK
LIQSKLKQYVTVGQALLHARESGEDPWAAIEDVLPWQEFINSLEETQFLSRKGNFDPLHLITEKYSTLRKYAPRMLSALQ
FIATPPAQTLSDALDTIRDMYRKQLRKVPPAAPTGFIPESWRKLVLTPSGIDRKYYEFCVMNELKGALRSGDIWVKGSRR
YRNFDDYLIPAAEFEKSRHNDQLQLAVQTDCRAYLQARMTLLASRLEEVNAMALAGDLPDVDISDKGVKITPLENSVPSG
ASPFADLVYGMLPHPKITEILEEVDNWTGFTRHFAHLKNNNVRPKDGRLLLTTILADGINLGLTKMAESCPGATKSSLEG
IQAWYIRDETYSAALAELVNAQKARPLAAFWGDGTTSSSDGQNFRVGSHGRYAGQVNLKYGQEPGVQIYTHISDQYSPFY
AKVISRVRDSTHVLDGLLYHESDLEITEHYTDTAGFTEHVFALMHLLGFAFAPRIRDLHDKRLFIHGKAERYPGLQSVIS
TTSLNIKDIEAHWDEILRLAASIKQGTVTASLMIKKLASYPKQNGLAKALREIGRIERTLFMLDWFRDPGLRRRVQAGLN
KGEARNALARAVFMHRLGEIRDRGLENQSYRASGLTLLTAAITLWNTVYIERAIESLKRKGIPINNQLVSHLSPLGWEHI
NLSGDY
>TNPA_BACTU/1-963 transposon family T7 Pfam:PF01526
MGVKQLLSEAQRNELMDLSRLTEWDLVTFRTFSKHDLHLILKHRRGYNRLGFALRLVLIRYPGWSLTEYKDIPQYVVAYV
TSRLRIPPEEFLVYAKRGNTLWEHLGEIRTEYGYQNFSSEYKETLLQFLVQQAMDNNNTLYLIEITISTLRKTKVILPAM
YVIEDIVWEAKQQADQKVYSILHDGLVQEQKDQLDALLLPTINGKSPLAWLKDVPAQPSPESFLKVIDRLQFVQKIGLTI
DTTKINTNRLRQLARLGSKYEPYAFRRFNEVKRYSMLVSFLLEITQDLIDYAIEIHDRLMMNLQTKGKKEQDEIQQANGK
KLNEKILQFITVCGTLIEAKETGKDAFAALDEVMSWNEMVESVEEAKQLSRPLNYDYLDLLNTRYSYVRRYAPTLLRSLH
FRATKSGEPVLQALDTIHELNETGKRKVPHGAPLHFVSNRWQKHVYDDDGNINRHYYELAALTELRNHIRSGDIFVSGSR
HHKAFDDYLIPYDEWNEVSNIPNGLTAPLKAEDYITDRINRLNEHLEWLSKNSEKLEGVDISQGKLHVERLDRGTPEEAK
AFSKLLHSMLPRIKLTDLLIEVASWTGFHDQFIHASTNQSPDQEEQNIVLATLMAMGTNIGLTKMAEATPGISYRQMANA
SQWRMYDDAMVRAQSILVNFQKEQKLSSYWGDGTTSSSDGMRLSIAVRSLHADSNPHYGTGKGGTIYRFVSDQLSAYHVK
VITTNARDALHVLDGLLHHETDLKIEEHYTDTAGYTDQVFALTHLLGFRFAPRIRDLADTKLFSIPGGEEYENVQALLKG
KINVKLIKENYEDIRRLAYSVQTGKVSSALIMGKLGSYARQNKLATALGEMGRIEKTLFTLDYISNKAVRRRVQKGLNKG
EAINALARTIFFGQRGEFRERALQDQLQRASALNIIINAISVWNTVYMEKAVEELKARGEFREDLMPYAWPLGWEHINFL
GEY
>HERVH_pol#LTR/ERV1 2079-5501 via tfasty with CfERVF1_pol, 5 frameshifts and 6 stopcodons.  [Primates]
RSPRKPTGPSQMLQVTLTVEGKSVPFLINMEATHCTLPSFQGPVSFASITVVGIDGQASKPLKTPQLxYQLRQYSFKHSF
LVIPTCPVPLxGRDTSTKLSASLTIPGLQLHLIAALLPNPKPPLHLLVSPNLNPQVxDTSIPSLVTNHAPLTISLKPNHS
YPAQCQDPIPQHALKGLKPVITRLLEHGLLKPINSPYNSPILPVLEPDKPYRVQDLCLINEIVFPIHPVVLNPYTLLSSI
PPSTTHYSVLDLKHAFFTIPLHPSTQPLFVFTWTDPDTHQSQQLTWAVMLQGFRGSPYYFSQALSHDLLSFHPSTSHLIQ
YIGDVLLCSPSFESSQQDTLLLLQHLFSKGYRPSKAQMSSPSVTYLGIILHKNTRALPADSVxLISQTPTPSTKQQLFSI
LGMVGYFRVRIPGFAILTKPLYKLTKGNLVDPIDPKSFPHSSFHSLKTALETVSTLALPDSSQHFSLHTAEVQGCAVRIL
TQGPGSHPVAFLSKQLDLTVLGWPSCLHAASAATLILLEALKITNYAQLILYSSHNFQNLFSSSHLTHILSAPRLLQIYS
LLYSPTITIIPGLDFNPASHIILDTIPDPHDCISLIHLTFTPFPHISFCPVSHPDHTWFIDGSSTRPNRHSPAKAGYASE
LVALIQALTLAKGLRVNIYTDSKYAFHILHHHAVIWAERGFLTTQVSSIINASLMKTLLKAALLPKEAGVIHCKGHQKTS
DPIALGNAYADKVARQAASSPTFVPHGQFFSFTSVTPTYSTAETSTYQALPPQGKWFLDQGKYLLPASQAHSILSSFHNL
FHVGYKPLACLLGPLISFPSWKSILKEITSQCSICYSATPQGLFRPPPFPTHKARGFAPAQDWQIDFTHMPRVRKLKYLL
VWVDTFTGWVEAFPIESEKATAVISSLLSDIIPWFGLPFSIQSDNGPAFTSxITQAVSQALGIQWNLHIPxHPQSSGKVK
PTNGLLKTHLTKLSLQLKKDWTVLLPLALLRIRTCPRDATGYSPFELLYGRTFLLGPNLIPDTSPLGDYLPVLQQARQES
HQAANLLLPTPDPQPYEDTLAGRSVLVKNLTPQTLQPRWTGPYLVIYSTLTAVRLQDPPHWVHHSRIKLCPLDSQPNPSS
SSWKSQLLSPTSLKLTRISEEQ
>HERVH48_env#LTR/ERV1 5816-6547 fragment [Primates]
LTAGNTLGVPVYNNLNKEKRSLKAGGSQTWQGDRSQRWQKDKWPPQRIIEYHGPATWAEDGSWGYRTPIYMLNRIIRPQT
VLEIITNQTASALEMLAQQQNQMRAAIYQNRLALDYLLAEEGGVCGKFNISNCCLNIDDNGKAVLEIASNIRKVAHVPVQ
TWKGWDPTNLLGGWFSNLGEFKTLVGTVIFIIGFLLFLPCVIPLIIKAIKTLVETTVNRQTIQMMLLLQRHGGYQPVSQE
YPKN
>HERVIP10F_env#LTR/ERV1 5594-7737 (also in Harlequin) [Primates]
NHSPHSRERMDSPHPSQESATPSRVVGHSPRGKPYQTKAKKNLTLFHLFYYSFFFPRSIADHLVINITKSISPQTIAFDA
CLVIPCGDLSSQRQLSTSEKYLCPSWLSSDWALVNWDHLIWGDFDKDPSGNQESCPHDVELLCRSWSNVLWTTKEQGWTA
PTSFCNFLKPYIHFTKGTAPPNCQLNQCNPIQVIISSPQSSSPFLSRFPSLSRFYGMGAEVSGTDPIGFFEMHFFDPPPP
APASKPFSKTSHNGTIVPPPSNDKAKIAMVEVKDLKQTLAIETGYQDVNAWLEWIKYSIRTLNKSNCYACAHGRPEAQIV
PFPLGWSSSRLGMGCMVALFQDSTAWGNKSCQALSLLYPEVRHPAGQPPRAIQLPSPNTKFTSCLSRQGGNLAFLGDLKG
CSELKNFQELTNQSALVHPRADVWWYCGGPLLDTLPNNWSGTCALVQLAIPFTLAFHQPEEGKIRHRKAREAPYGSFDSH
IYLDAIGVPRGIPDQFKARNQIAAGFESIFWWVTINKNVDWINYIYYNQQRFINYTRDAVKGIAEQLGATSQMAWENRIA
LDMILAERGGVCIMIKTQCCTFIPNNTAPNGSITKALQGLTALSNELASNSGVNDPFTGWLEKWFGKWKGIIASILTSLV
AVIGVLILVGCCVIPCIRGLVQRLIEMALTKTSLNYPPPYPEKLLLLENQAEQLSQDMLNKFEEKAVRKMQEEE
>HERVP71A_pol#LTR/ERV1 2018-5521 [Primates]
GGQGFLLSRSHQEPLINLKVGPEGEEVTFLVDTGVARSSLIHQPRGTELSKEKLTVSGVKGEGFQVPIFKKMLIRLGPEQ
IEGSLLYVPEAGTNLLGRDLIVRLGLGLGIEEGQIKVMMGLLTEEEERKINPLVWVREGNRGGLKITPLQIELKQPGEVV
CRKQYPISIEGRKGLQPVIEGLIKDGLLEPCMSPYNTPILPVKKPDGSYRLVQDLRAINQIVQTRHPVVPNPYTLLSKIP
YEHKWFSVVDLKDAFWACPLDFRSRDLFAFEWENPITGRKQQYRWTVLPQGFTEAPNLFGQILEKVLEEFQPSRGTQLLQ
YVDDLLISGERRAKVSETTISLLNFLGERGLRVSKNKLQFVEKEVKYLGHLISEGKRRINPERISGIVGLPLPKTKRELR
KFLGLTGYCRLWIDSYAQKTKILYLKLLEEEPDPLQWSPEEIQAVKELKQALITAPVLALPSLEKPFHLFVTVDQGVALG
VLTQTWGGKRQPVAFVSKLLDPVSRGWPKCVQAVAATALLVEESRKLTFGGALIVSTPHQVRNILNQKAGRWLTDSRILK
YEAILLEKDDLVVTTNTCLNPASFLWKGEENKETSDHNCLDIIEYQTKVRPDLREAPLHDGIRLFVDGSSRVIDGKRHNG
YAVIDGNKHSLCEKGRLPNGWSAQTCELYALNQALKLLEGQEGTIYTDSKYAYGVVHTFGKIWTEQGLINSRGKELVHGE
LVKQVLESLLLPAEVAIVHVNGHQKGNTIEAVGNRLADEAAKQASLEEEIRLFSLIPDIPKVVLRPQFTREEKEELDRIG
VTQTEDGKWVLPDGREMISKPLMRELMSILHKGSHWGPQALCDAILRNYGCIGIYTLAKQVCGSCVTCQRINKKVIRKQA
TGGRPPGLRPFQSIQVDFTEMPKVGRLKYLLVIVDHLSGWVEAFPLPTATAGNVVKIILEQIVPRFGLVENIDSDNGSHF
TSRVLRGIMEGLQIRWDYHTPWHPPSSGKVERMNQTLKKHITKLILETKMPWTKCLPIALLRIRTAPRKDLGLSPYELLY
GLPYLGRATDLPTMETKDQFLRNYILAISSTLSSLRLKGLLTQTPPLEFTVHHFQPGDLVLIKTWKEDKLHPSWEGPYQV
LLTTETAVRTAEWGWTHYTRVKGLVKEETPEGRGKKEKRPVESAWVT
>HERVIP10F_gag#LTR/ERV1 504-2219 [Primates]
MGNTPSKTGSKGDKDGNKDIPPDSPLGLMLKHWKDNERTKHRKKQQMIKYCCFIWTQGPILKPSIFWPKFGSNEDVMCQL
LIRYVNDKSPVSQEELGYALCWRQGPALLFPLKTNREEPNLAPQNEKSEEPALMPKDSSAWDPLDYLPPLSVPNLSPQTA
TAASDPIPNPPSTHVIPPPYNPDSWELPSHQPVPSQPKYPSLKGLQREVEQCKKDIQNFPFPSVPKRSAPTLFPLKEVPQ
GGGGEGIGFVNAPLTSSEVRNFKKELKPLLDDPYGVADQIDQFLGPQLYTWVKLMSILGILFSGEERSMIRRAAMVVWER
EHPPGENVPTADQKFPTRDPRWDNNNADHRENMQDLREMIIKGIRESVPRTQNLSKAFDIQQEKDEGPMRFLDRLREQMR
QYAGLNLDDPLGQGMLKLQFVTKSWPDISKKLQKIDNWEDHPLSELLREAQKVYVKRDEEKQKQKTKLMFSTFQQMAPNP
GTSRQSFQGARNYKGSEPSFKGPQPPSGGPRSSSTRPPKEYGGAGLKNPRTKREEGQDRCYRCGRTGHFKRGCPELRKEK
EALPLMTFEEE
>HERV17_pol#LTR/ERV1 3415-6912 HERV30_pol really close [Primates]
GCPGQAPAHAITLTEPRVCLTIEGQEVNCLLDTGAAFSVLLSCPGQLSSRSVTIRGVLGQPVTRYFSQPLSCDWGTLLFS
HAFLIMPESPTPLLGRDILAKAGAIIHLNIGEGTPVCCPLLEEGINPEVWATEGQYGRAKNARPVQVKLKDSASFPYQRQ
YPLRPEAQQGLQKIVKDLKAQGLVKPCSSPCNTPILGVQKPNGQWRLVQDLRIINEAVVPLYPAVPNPYTLLSQIPEEAE
WFTVLDLKDAFFCIPVHPDSQFLFAFEDPSNPTSQLTWTVLPQGFRDSPHLFGQALAQDLSQFSYLDTLVLRYVDDLLLA
ARSETLCHQATQALLNFLATCGYKVSKPKAQLCSQQVKYLGLKLSKGTRALSEERIQPILAYPHPKTLKQLRGFLGITGF
CRIWIPRYGEIARPLYTLIKETQKANTHLVRWTPEAEAAFQALKKALTQAPVLSLPTGQDFSLYVTEKTGIALGVLTQVR
GTSLQPVAYLSKEIDVVAKGWPHCLRVVAAVAVLVSEAVKIIQGRDLTVWTSHDVNGILTAKGDLWLSDNRLLKYQALLL
EGPVLRLRTCATLNPATFLPDNEEKIEHNCQQVIAQTYAARGDLLEVPLTDPDLNLYTDGSSFVEKGLRKAGYAVVSDNG
ILESNPLTPGTSAQLAELIALTRALELGEGKRVNIYTDSKYAYLVLHAHAAIWREREFLTSEGTPIKHQEAIRRLLLAVQ
KPKEVAVLHCRGHQKGKEREIEGNRQADIEAKRAARQDPPLEMLIEGPLVWGNPLRETKPQYSAEEIEWGTSRGHSFLPS
GWLATEEGKILLPAANQWKLLKTLHQTFHLGIDSTHQMAKSLFTGPGLFKTIKQIVRACEVCQRNNPLPYRQAPSGEQRT
GHYPGEDWQLDFTHMPKSQGFQYLLVWVDTFTGWAEAFPCRTEKAQEVIKALVHEIIPRFGLPRGLQSDNGPAFKAAVTQ
GVSQALGIQYHLHCAWRPQSSGKVEKMNETLKRHLKKLTQETHLAWPALLPIALLRIRNSPQKAGLSPYEMLYGRPFLTN
DLVLDRETANLVADITSLAKYQQVLKTLQGTCPREEGKELFHPGDMVLVKSLPSNSPSLDTSWEGPYPVILSTPTAVKVA
GVESWIHHTRVKPWILPKEPENPGDNASYSCEPLEDLRLLFKRQP
>FERV-R1_pol#LTR/ERV1 2019-7658 (split gag and pol) [Takifugu]
MPILTQRPQAEPTVNVTVYSRRHQFMIDTGATYSCIGKDGANLPLSASKIRTVGFSGKXQVMPMTGPVPLQIGKXTIYAS
LLYSADAPXNLLGGDVLCQLQAEIKCTPXGIYFDVAXEQPDRVSVPMTSLTTPADSPRTMHXGTEARVFWMKLTTSNSFL
YHEWETWRPLVMNHYDTSKEPTLPLHCTMMYDENQTHEDYEQSWDGAINNKATVIQYEDIIXGPQGAAAAVKLQDDVKDW
FQVPNSTPHVTLLIADKYESHDLGPMVKAARQVKDWTTTDCQQIRTSPDGLFFKIAFTLADEAMAEKVKVPRERVRQMLI
AEEHTTLLEQVPSQVWSQHKTDVGFVKSAEPQKFLTKPGVRLPHQRQYPLRPDTIEGIRSTITGLEDAGVLIKTRSACNT
PIFPIKKPNSDEYRLVHDLRAINAIVTEEIPIVPDPHTLLFNIPPGTKWFTVIDLCSAFFSVPVHPDSQYLFAFTYKNQQ
YTYTRLPQGFVHSTSIFNRILANDLSHLNIQSTTLMYVDNILICSESKEQCEKDSITVLTALAEGGHKVSKKKLQFCQQT
VEYLGRQLSGDKRHIAPSQLEAISKIPKPQTVGHMLSFLGMAGYSRSWVYDYALKTAPLRAMIRAAGQGLQSAQLQWTDE
AEGAFQLLKNDLQTAPALANPDYSKPFHLYVAERQGYACAVLMQDAPTGKQPISYYSTKLDNVEEGLPPCYQGLAAAAFA
YKKASVITMGHPVFLYTSHQLHAMLTSPRFVITQGRRTGYEILLXGPDLTIQRCTTINPATRMVLPTEXVXHDCLKETEN
FMKVRDDLYNHPIPSDLXXFVDGSCVRGETGNRAGYGIVQLNPDGTYAKVQSVSLDQPCSAQLXEIKALTAXCKLAANKR
ATIYTDSGYGYGVCHINAXIWKQRGFVRADGTPXAHGQAVTELXQAMQXPTXLAIXKCAAHQXSKSPIAVGNNLADEAAK
EATGQAVQGPMLFEEDCGXITSLASLTEAQNRVSEAEKRLWVQRGAVRTSHPHPGLWRGFRGHFVLPLSLLPIAIKKMHE
PDHCSRAQVIRKLQAVWWSPYMTPMVDRELALCPHCPKYNVRKMFTQPLAHIPMPDGPFXHLVMDYVDMIDRVQGKRYML
VVVCRFSRWIEACPTSKADHKAAAKFLCKEVFPRFXMPDTISSDNGPHFVSQVIQEMFKILGIKQKYGCVYHPQSQGSVE
RANGVLKTKIAKIMADCNGKLTWVDALPIALMAMRSQTNRLTHLTPHEMLTGRPMPLPQTRGPVEGPAIAQLERELGDYL
RALTQIHRLVFQQVKEAHGKDETHIPVDVRDVQVGDSVFIRVFRXQWNEPRREGPFKVVLTTPTALKVEGKPFWFHKNHC
TRHRPPDPPGHYPGPSESEHADRETYGHPLATSPRSSTSSSSTSSQSXSPHGERRSARLAARRXR
>ERV-3_AMi_gag#LTR/ERV1 399..2147[Crocodylidae]
MLRKMSLFRKRAPKVGDQEARWVRREEISPLHKEILKGGPSPWREDVCTPGFSIGDMEDQFEKFCLCERPSAQRQHSALV
WLLWHAVKTAVEEKAQRASEIEEKEEQIQILKDKCVQLETSNQTLKGLSRNLENENEQLRKINQDNARQLELLDQEKASR
EALQKLVKTMAKDQAEKGAKVNHGPCLNTISRLKKELQERSLQVAAVIRGDQAWDPDIPFNPGEIWGGEMWGDPEDAGDP
SPEDPKSEKESTLVPEVSAITRTSVTRDAQGNPRETTQVTVPLSGADLAALGKTLGPANIRNLGQWLQKSLNVVECETLS
AREWHRLLRACATPEVQAAMSPEGGFGXDTIPRSVVGLGISLGRKTFKGQFGASHQTPGEPVRDYVIRCVMLGLLSGSVL
PLDRAGNRTPDIRDIDYPPGFWKEVQEGMHQSIIGLMGPLREARSYALGEVLARAQDAERLVGRQGGAIAATQFKEKPND
TPNYVVTYSNESAYPKSDRRVGGPNHRPSPHWVNPRVTKEREGENGIRAAVWKFLMQHGEPKGKWHGKPLAELLIRMAEL
SAEGAAPPHSNRVAASAPVPEEH
>FMLV_gag#LTR/ERV1  gi|9626098|ref|NP_040332.1| gag protein [Friend murine leukemia virus]
MGQAVTTPLSLTLDHWKDVERTAHNLSVEVRKRRWVTFCSAEWPTFNVGWPRDGTFNPDIITQVKIKVFSPGPHGHPDQV
PYIVTWEAIAVDPPPWVRPFVHPKPPLSLPPSAPSLPPEPPLSTPPQSSLYPALTSPLNTKPRPQVLPDSGGPLIDLLTE
DPPPYRDPGPPSPDGNGDSGEVAPTEGAPDPSPMVSRLRGRKEPPVADSTTSQAFPLRLGGNGQYQYWPFSSSDLYNWKN
NNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWD
YNTQRGRNHLVHYRQLLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAMSFIWQ
SAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERRRAEDVQREKERDRRRHREMSKLLAT
VVSGQRQDRQGGERRRPQLDHDQCAYCKEKGHWARDCPKKPRGPRGPRPQASLLTLDD
>HERV17_env#LTR/ERV1 6934-8568 HERV30_env really close [Primates]
IPMALPYHIFLFTVLLPPFTLTAPPPCRCTTSSSPYQELLWRMRLPGNIDAPSYRSFSKGNPTFTAHTHMPRNCYNSATL
CMHANTHYWTGKMINPSCPGGLGATVCWTYFTHTGMSDGGGVQDQAREKHVKEVISQLTRVHSTPSPYKGLDLSKLHETL
RTHTRLVSLFNTTLTGLHEVSAQNPTNCWMCLPLHFRPYISIPVPEQWNNFSTEINTTSVLVGPLVSNLEITHTSNLTCV
KFSNTIDTTNSQCIRWVTPPTRIVCLPSGIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIYTEQDLYSYVVPKPRNKRV
PILPFVIGAGVLGGLGTGIGGITTSTQFYYKLSQELNGDMERVADSLVTLQDQLNSLAAVVLQNRRALDLLTAERGGTCL
FLGEECCYYVNQSGIVTEKVKEIRDRIQRRAEELRNTGPWGLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVKFVSS
RIEAVKLQIVLQMEPQMQSMTKIYRGPLDRPASPCSDVNDIEGTPPEEISTARPLLRPNSAGSS
>HERV15_gag#LTR/ERV1 1384-2664 [Catarrhini]
MSAPIYVPVYPSLARIRQEAESGASAESGSEESEAQSPPTPEEQKPPLEKNKEDGQGEAAGRLRSGRPRALQMPLRETRT
QVYDDQGQIQGGPRLYVYQPFSTTDLLNWKQHAPSYAEKPQALIDLVNSIIITHNPTWPDCQQLLLTLFNTEERRRVNQA
ALSWLEGEAPEATPNPRQFAVERYPNEDPNWDPNEAGDMERLQLYRRALLNGIKAGGRKAMNMSKISEVRQKPDESRSAF
YERLCEAYRLYTPIIPEAPENQNMINMTFVRQAQGDIRRKLQKLEGFAGKNISELLEIANKVYINREEEAERKEERKTRN
RNKETAQFIAAALAESNPGFARGRGRGRGRGRGQTRPGDESQSRLDRNQCARCRQMGHWKDECPEKEKDGDDGQWSNTRV
RRSVASSGASKADPDLIGLAGAENLED
>MacERV1_env#LTR/ERV1 5528-7213 [Cercopithecidae]
LTANMQLGSLTLTLVALVAAGENTKPAPNPFVWRFWLYENRTHPGQPHKPGKLLASADCPSSGCNSPILLNFTGFQIAKP
MAPIICFEFDQTKYNCKHYWWHQNAGCPYNYCNIHRSRYWGKEEQLDPKWPFHRRRDGDFSYTWIVRDPWNSRWTTPQHG
AVYYSSSSTWPSSHLYLWRGLVQVRPLVHGNIQRQENRLTQDLRPFSWLKLLQEGLELANLTGLHSLSGCFLCATLGRPP
LTAVPLPWGSSTSAQANNLRNLSYAPIPNVPLYLNPSQEKFPYCFSGTNSSLCNITATPPSTTLRAPPGIFFWCNGTLSK
NLSGPSVTNLLCLPVTLVPRLTLLTAGEFLGYTGNWTSTAIHPVPRPRPARAIFLPLIAGISLTSSLIAAGLAGGALGHT
LIESNKLYQQFAVAMEESAESLASLQRQLTSLAQVTLQNRRALDLLTAEKGGTCMFLKEDCCFYINESGLVEDRVQQLRK
LSTEVKTRQFASAADQWWNSSMFSLLAPFLGPLLSLLFLFTVGPCVVNRILQFVRERFDTVQLMVLRAQYQPVNAETESD
L
>PRIMA41_env#LTR/ERV1 6261-7530 via tfasty with PRIMA4_env, 1 frameshift and 8 stopcodons.  [Primates]
MGNIKIWIGILLLGISWNHAESNLFTEWAQTLASLHNQTNCWVCGKLPLSSTSGLPWHIQPANLSLWGTLLxLGNxKxxT
YTLFPHALxLVWPKPISSHAERQEGTFFFCLIRKQLNSTPTxVILYRMDLGGxQVSGKAPLCFERHNNSHHQTGTRDMGW
LPPQQCNQTLLLTDQMWMGWQHNLPKMGAYPSPWGWLWACRTHGWPYLPYNWTGRCMWGCPYLPGCILTKLDSLPSNWEI
VKARHRRQKQASWWFYPMAIFSPQAATKLNIExQVEAASAKHTVAAFNNTCHAALPLLTEETSQIRQVALQNRMALDILT
AAQGGTCALIKTECCVYVSDYSHTITQAMKALDTHISATDVLSVDPISAWFQQLPSSWKAFLFSLLGMILLILLCCCGIY
CGCTLCVGMQDKLTQCFLKLDTY
>PERV-C_gag#LTR/ERV1 gi|7650140|gb|AAF65926.1| gag-pol precursor Porcine endogenous retroviruses PERV-C (pol bit removed) [Sus scrofa domestica]
MGQTVTTPLSLTLDHWTEVRSRAHNLSVQVKKGPWQTFCASEWPTFDVGWPSEGTFNSEIILAVKAIIFQTGPGSHPDQE
PYILTWQDLAEDPPPWVKPWLNKPRKPGPRILALGEKNKHSAEKVEPSPRIYPEIEEPPTWPEPQPVPPPPYPAQGAVRG
PSAPPGAPVVEGPAAGTRSRRGATPERTDEIAILPLRTYGPPMPGGQLQPLQYWPFSSADLYNWKTNHPPFSEDPQRLTG
LVESLMFSHQPTWDDCQQLLQTLFTTEERERILLEARKNVPGADGRPTQLQNEIDMGFPLTRPGWDYNTAEGRESLKIYR
QALVAGLRGASRRPTNLAKVREVMQGPNEPPSVFLERLMEAFRRFTPFDPTSEAQKASVALAFIGQSALDIRKKLQRLEG
LQEAELRDLVREAEKVYYRRETEEEKEQRKEKEREEREERRDRRQEKNLTKILAAVVEGKSSRERERDFRKIRSGPRQSG
NLGNRTPLDKDQCAYCKEKGHWARNCPKKGNKGPKVLALEEDKDQ
>PTERV1a_pol#LTR/ERV1 2386-6027 [Pan troglodytes]
GRRGSDPLPEPRVTLQVEGSPVQFLVDTGAQHSVLVKTNGKLSSKSSWVQGATGVKKYPWTTQRTVNLGAKNVTHSFLVI
PESPCPLLGRDLLTKMGAQIHFLPEGPVVTNPHNRXVSILTINLEDEYRLHQEKAAPDQDIATWLQQYPEAWAETGGLGL
AKHRPALFIELKPGTDPVRVRQYPMPLEAKRGIAPHIRRLLDQGVLRPCHSPWNTPLLPVRKPNSGEYRPVQDLREINKR
VVDIHPTVPNPYTLLSTLNPKHQWYTVLDLKDAFFSLPLAPQSQKLFAFEWNDPDRGISGQLTWTRLPQGFKNSPTLFDE
ALHEDLGEYRRKHPEIILLQYVDDLLIAAETQEACIQGTKGLLQALGNLGYRASAKKAQICKPEVIYLGYLLKGGQRWLT
DARKQTVLQIPRPQSTRQVREFLGSAGFCXLWIPGFAELAKPLYQATRGQQPFNWTDEAELAFQQIKTALLSAPALGLPD
VTKPFHLYVDENKGVAKAVITQNLGPWRRPVAYLSKKLDPVAAGWPPCLRMIAATALMVQDADKLVMGQELRVVTPHAIE
GVLKQPPNRWMSNARLTHYQGLLLNPLRIIFLPPTTLNPASLLPNPDLDAPLHDCTEILAQVHGVREDLQDRPLPDADLV
WFTDGSSFMHQGQRYAGAAVTSETEVIWAEPLPPGTSAQKAELIALTQALTLGAGKKLTVYTDSRYAFATAHIHGAIYRE
RGLLTAEGKEIKNKQEILALLTALWRPEKLAIVHCPGHQKLTTPTAQGNFLADQTARNVAKAPSQLLALQLPDPGPRDLP
YFPEYSEQDLQWIDKLPLKQIQNGWWTDTNDQTILPEKLGQQVLEHIHRTTHLGARRMIDLIRRSKLKIRHIAETASSIV
TSCKVCQLNNAYPQSQAAAGTRLRGTRPGIYWEVDFTEIKPGKYGYRYLLVFVDTFSGWTEAFPTKRETAQVVAKKILED
ILPRYGFPIQIGSDNGPAFVAKVSQDLASILGANWKLHCAYRPQSSGQVERMNRTLKETLTKLTIETGANWVVLLPYALF
RARNTPYKLGLTPYEIMYGRPPPLVPSLKDDLLKSETENVSEFLFSLQALQKIHQEIWPKLRELYETSPPPTPHPYQPGD
WVLVKRHRQETLEPRWKGPLQVLLTTPTALKVEGIASWIHYTHVKPVDPTSDLLGPITAAAAEAPDTWTVDRAKNNPLKL
TLRRQHNSLQTCS
>WDSV_gag#LTR/ERV1 gi|9629908|ref|NP_045937.1| Pr gag-pro-pol (gag and pol split) [Walleye dermal sarcoma virus]
MGNSSSTPPPSALKNSDLFKTMLRTQYSGSVKTRRINQDIKKQYPLWPDQGTCATKHWEQAVLIPLDSVSEETAKVLNFL
RVKIQARKGETARQMTAHTIKKLIVGTIDKNKQQTEILQKTDESDEEMDTTNTMLFIARNKRERIAQQQQADLAAQQQVL
LLQREQQREQREKDIKKRDEKKKKLLPDTTQKVEQTDIGEASSSDASAQKPISTDNNPDLKVDGVLTRSQHTTVPSNITI
KKDGTSVQYQHPIRNYPTGEGNLTAQVRNPFRPLELQQLRKDCPALPEGIPQLAEWLTQTMAIYNCDEADVEQLARVIFP
TPVRQIAGVINGHAAANTAAKIQNYVTACRQHYPAVCDWGTIQAFTYKPPQTAHEYVKHAEIIFKNNSGLEWQHATVPFI
NMVVQGLPPKVTRSLMSGNPDWSTKTIPQIIPLMQHYLNLQSRQDAKIKQTPLVLQLAMPAQTMNGNKGYVGSYPTNEPY
YSFQQQQRPAPRAPPGNVPSNTCFFCKQPGHWKADCPNKTRNLRNMGNMGRGGRMGGPPYRSQPYPAFIQPPQNHQNQYN
GRMDRSQLQASAQEWLPGTYPADPIDCPYEK
>TguERV6_gag#LTR/ERV1 424-1842 [Taeniopygia]
MGQGKSKSKSPSPVGVKLPPIPKDSPLGFMLTNWEHFPGAPGKDKAKMIHYCIEVWGGQEISKGVFWPIFGSSEDWVKQL
LNGWINTKQPPNPEESAYARVWTEKPEVLVFKLSGVSGGKKKKGRAEEVIIAPPPYIPPAPNAPPPPPQSDEEESDSDSD
QPSGSRGPLTRSKTRGKLFPLREMPMGGPQPGIGFISVPLSSGDVRDFKKEMGNLLEDPLGVAERVDQFLGPNIYTWEEL
QSILNILFTVEEKNMIRTAGMRVWDAQPAHAQQRADTKWPLENPNWNNQDPVHRANMRDFRTILIDGIKESVPRGQNINK
AFNDRQKKDETPTEWLERLRKSFQLYSGLNPNDPMGQAILKVQFVSKSWDDIRRKIQKMDDWQDRGLEELLREAQKVYVR
REDESQKKQVKMMVAAVRESRRAEEGQKRVTRNREGDKGKVGERVCYYCGKKGHFKKECRRRLKDEEEFKIE
>MMERGLN_pol#LTR/ERV1 2140-5680 via tfasty with KORV_pol, 1 frameshift and 2 stopcodons.  [Mus mouse genus]
GERGLTHLPEPRVTLEVEGSPVDFLVDTGAEFSVLKTPLGKVKKNEKTLVIGATGQKSYPWTTSRVVDIGRNRVTHSFLV
IPECPIPLLGRDLLTKLKAQITFTSHRPEVFWGIKAPQTLELSLQLGEEYRLYQNKVKPPEGLQDWLNRYPQAWAETGGV
GMANWSPPVVIELKSGATPIGVRQYPMSREAQEGIRPQINKLLQQGILVPCKSPWNTPLLPVKKPGTSDYRPVQDLREVN
KRVQDIHPTVPNPYNLLSTLPPGRTWYTVLDLKDTFFCLRLHPNSQPLFAFEWRDSESGQAGQLTWTRLPQGFKNSPTLF
DEALHRDLALFRANNPQVTLLQYVDDLLLAAETHEDCEIGTxNLLGELGNLGYRASAKKAQLCQIEVTYLGYVLRDRQRW
LTEARKQAVMQIPTPTTARQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKGEFTWTREHQLAFETLKKALLxAPALAL
PDLNKPFTLYIDERNGVARGVLTQVLGPWKRPVAYLSKKLDPVASGWPSCLRAIAATAVLVRDADKLTMGQNVTIVAPHS
LESIIRQPLDRWMTNARMTHYQSLLLTERVSFAPPAILNPASLLPEADEAPAHKCEEILAEETGIRPDLTDQPSPGAMTW
FTDGSSFVVEGKRRAGAAVVDGKSVIWASSLLEGTSAQKAELIALIQALRLAEGRALNVYTDSRYAFATAHVHRAIYRHR
GLLTSAGKDIKNKEGILSLLEAVHLPRRVVIFHCPGHQKGTGPVEKGNQMADQEAKKAAQGPMTLVVRTQQPAAEEINKR
TLTEEEGRDYLANIHHLTHLGTKKLLKLVSKSPYYIPGLKRIVEEIVKNCRACALTNAGSSRLQERKRLRGDRPGAYWET
DFTEVKPARYGNKYLLVFIDTFSGWVKAFPTKKETTNVVVKKILEEILPRFGIPKVMGSDNRPAFVSQVSQGLARQLGTN
WKLHCAYRPQSSGQVERMNRTLKETLTKIALESGGSDWTAILPYALFRVQNTPGPLGLTPFELMYGAPPPIFMTVGDKNR
LDVSFSPPSSLLARLKALEIVRKEVWEQLKETYVAGDTQVPHQFEVGDAVLVRRHRAGNLEPRWKGPYLVLLTTPTAVKV
EGIPTWVHASHVKRAPPGVSHDEWTLEKTTNPFKLRLLRRSDPKRLQPPQSCSTNVGGTQ
>MDEV_gag#LTR/ERV1 gi|3309124|gb|AAC31804.1| gag protein [Mus dunni endogenous virus]
MGQSVSTPLSLTLEHWKEVKIRAHNQSVEVRKGPWQTFCASEWPTFGVGWPPEGAFDLSLIAAVRRIVFQEEGGHPDQIP
YIVTWQSLVQFPPSWVKPWTPNPSKLTVAVAQSDAAEKSGPSAPPKIYPEIDDLLWMDSQPPPYPLPQQPPAAAPPVAAP
QPEPTASGAQGPAGGTRSRRGRSPAEEGGPDSTVALPLRAHVGGPTPGPNDLIPLQYWPFSSSDLYNWKTNHPPFSENPS
GLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERERILMEARKNVLGEDGTPTALPNLVDEAFPLNRPNWDYNTAEGRGRL
LVYRRTLVAGLRGAARRPTNLAKVREVLQGQTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMAFIGQSAPDIKKKLQ
RLEGLQDYTLQDLVKEAEKVYHKRETEEERQEREKKEVEERENRRDRRQERNLSKILAAVINDRQSEKGRTGFLGNRAVK
PPGGRKTPLEKDQCAFCKEKGHWAKDCPKKRRQFKVLTLEDD
>MacERV1_pol#LTR/ERV1 1911-5549 [Cercopithecidae]
GRRGSDPLPEPRVTLQVEGSPVQFLVDTGAQHSVLVKTNGKLSSKSSWVQGATGIKKYPWTTQRTVNLGARNVTHSFLVI
PESPCPLLGRDLLTKMGAQIHFLPEGPVVTNSQNQPVSVLTITLEDEYRLHQERAAPDQDIATWLQQYPGAWAETGGLGL
AKHRPALFVELKPGTDPVRVRQYPMPLEAKEGIAPHIRRLLDQGVLRPCHSPWNTPLLPVRKPNSGEYRPVQDLREVNKR
VMDIHPTVPNPYTLLSTLNPKHQWYTVLDLKDAFFSLPLAPQSQKLFAFEWTDPGRGISGQLTWTRLPQGFKNSPTLFDE
ALHEDLGEYRRKHPEITLLQYVDDLLIAAETQEACIQGTKGLLQALGNLGYRASAKKAQICKSEVTYLGYLLKGGQRWLT
DARKQTVLQIPRPQSTRQVREFLGSAGFCRLWIPGFAELAKPLYQATRGQQPFNWTEEAESAFQQIKTALLSAPALGLPD
VTKPFHLYVDESKGVAKAVITQNLGPWRRPVAYLSKKLDPVAAGWPPCLRMIAATALMVQDADKLVMGQELRVVTPHAIE
GVLKQPPNRWISNARLTHYQGLLLNPLRITFLPPTTLNPASLLPNPDLDAPLHDCTEILAQVHGVREDLQDRPLPDADLV
WFTDGSSFVHQGQRYAGAAVTSETEVIWAEPLPPGTSAQKAELIALTQALTLGAGKKLTVYTDSRYAFATAHIHGAIYRE
RGLLTAEGKEIKNKQEILALLTALWRPEKLAIVHCPGHQKPTTPIAQGNFLADQTARSVAKAPSQLLALQLPDPGPRDLP
YLPDYSEQDLQWIDKLPLKQIQNGWWTDTNDQTILPEKLGQQVLEHIHRTTHLGARRMIDLIRRSKLKIRHIAETASSIV
TSCKVCQLNNAYPQSQAATGTRLRGTRPGIYWEVDFTEIKPGKYGYRYLLVFVDTFSGWTEAFPTKRETAQVVAKKILED
ILPRYGFPVQIGSDNGPAFVAKVSQDLASILGANWKLHCAYRPQSSGQVERMNRTLKETLTKLTMETGANWVVLLPYALF
RARNTPYRLGLTPYEIMYGRPPPLVPSLKDDLLKSETENVSELLFSLQALQKIHQEIWPKLKELYETGPPPTPHPYQPGD
WVLVKRHRQETLEPRWKGPLQVLLTTPTALKVEGIASWIHYTHVKPVDPTSDLLGPITAAAEAPATWTVDRAKNNPLKLT
LRRQHSSLQTCS
>MER57A_env#LTR/ERV1 4795-5634 via tfasty with MER70_env, 2 stopcodons [Primates]
MDQDFSAIMRLLSLNFFLAYASVNNRTEKGLLCALMGYTFICEGFCSQPYTWTILCLDRWKTKGQCRxEILMVHLLLHNQ
SETEHWSTPLNLHHRLKRTLPGGLHSSRWASFVRSLFPWFGVNEAMIRNVSLIIGSIADSTVKAMVTQQTLNSLVKVMLN
NRIALDYLLAKQRSICAVADTSCCTWRNTLGIIEIQLxEINEQAAWLKRVDSLSSSFFDLFDFSWFGSWGPWLRSILQTL
GIILLIVIIVVSLVHCILSKVLNVCMQPSLECQMVSLQLE
>MMERGLN_env#LTR/ERV1 5562-7514 [Mus mouse genus]
MMSGLWRRLLILLSCACFVGAIPKDFNPHSPVQQTWEVLNEEGRAVWTIAEVHPLWTWWPDLFPDICKLAIGAPPGWDLE
GYSDIQRAPLTPPPYVEKHLRDPWGGCSNQRDRSMLRTHPFYVCPGPHQSQSLNPTCGGKADFFCKSWGCETSGTARWKP
SSSWDYIRVTANYSLASYVPGGFDLDECTDWCHPLRVTFTEPGKRALGWTRGYTWGLRIYKERYDEGLLFTIRLKIETPY
NPLGPPTKFTPLTHTITQPTPVIADPLNMAAITQPPTPQVPLTITPTIPSRQRMFNLVRGAFYALNRTDPSATEDCWLCL
SSGPPYYEGIAFNGDFNRISSHTSCSWGTGQKLTLTEVSVRNPGLCIGTPPSTHKHLCGQIQSMSRTEANYYLVPSPVGW
WACNTGLTPCVSTKVFNSSHDFCVMIQLLPHVYYHPASSLEESYAGRRSKREPTTLTLAAFMGIGMAVGVGTGVSALIEG
RQGIQSLRDAVNEDLAAIEKSIDALKKSLTSLSEVVLQNRRGLDLLFLKEGGLCAALKEECCFYADHTGIVRDSMQKLRE
KLERRKPERDAQRGWFESWFESRPSWITSLISAVAGPILMICLALVFSPCIINRGMAFIQSKIDTVKLMVLQRQYQPIVQ
VDEELGDTNL
>MER83A_env#LTR/ERV1 2879-4019 via tfasty with GGLTR7_env, 1 frameshift and 1 stopcodon [Eutheria]
MPINSSATGMEYIGIGVETGQLLNLTNTSTSFPRFSLIPLIFXNLICQAPHSHNTTSQTFTPLCVDNYFLGHCPSTFNPR
GPWDPXIYANYTGIQTNHTYAWLRGPSSGVSLKGTGFFFLCGSNMFLALPIKWXGXCTTVAAIPGVHIYNSSDFITSSQV
PNLXSFLSRALQRXSEENRSXTxPPIIWHPRHYNPXIERNGLGHSVASAIFWFAGIPMLKRSIRNLTILVQQSWEATVTA
IEGQXQALNSLAGVVLQNQRALDVLTAEAGGTCALLNETCCFYINTSGQVEESLEKIKXNIKISEGLQKRVPQDSFFAQL
FQXFSSWVWPWVAQLLLPIIMLILVCLFAXRIVNAIYLILCLLEYXNFKPKRYCSKDISY
>pSIVgml_gag#LTR/ERV-Lenti 69-1121 via tfasty with EIAV_gag, 2 stopcodons. [Microcebus murinus]
MEKGKMGDGQCLGRDTXKKAQRVRVRGTGKPMHKLGNFVWAVKIAAAVAERSIDKTAVGVFRRWPPKGGAGDINVALDTL
LCYGLQRKGSQWKVQRVPQMWQRWVGWQEQLYGKKEQDPEAEAAAYPVVNRGQGWAYEPMSTRTVAAWIRQTREKGLTSP
ETITYWGLISQDLSSREQVQLLEVIPGLQADKDMLGAYLGERAREWDAQPQQPLPYTFCSYxGIxQGIRPFAISAQGREA
AQVFRAWITQGLMSLAQLQAPHPGSTKILQGPKEPYGEFINRLFLQINQEGAPEEVKTYLKGHLSIENANADCQKAMSHL
RLEMTPVQPSALEPPQGGEMGLYPTLKELLN
>SloEFV_env#LTR/ERV-Foamy 5084-8114 via tfasty with EFV_env, 3 frameshifts and 13 stopcodons. [Choloepus hoffmanni]
MEKYTPVLNLQDWMVWNRAKDMEFFMRKYPNIDLEDPGWESEEISKPTAQVRFRYFLYTLCATSTQILCWFFFGLIIIGL
ILGFILSAVFRLQWKNAIHHPGPIISWNLTSVTPMTDIPVALPQYHxExxAIHPAPRNVHLEICGLQQGMFWEQFPKPII
HKKRTLGISQILLIDTPLVWHKIIRYIPLKDKKILTQLIDNEFAQLQEIVLPFTLPLDQPYTQEQxQQKGCFQEFGHCYL
VKYNSERIWLTSKIIQDHGLTPPSSGISDTTRMNAWKYYIQPQIMRPRNWTIADQNYACICAYSKPRGNATYKQPSFCST
NMYNSxWQVARTMTEQEQVLNKKLFPMIENNITSLLKDCALPSExKQNNISNREPLEKLFKSPTITQFCNHPELIYFLNT
TYTTYSLWEGDCGYFQKNVSSILPECVNFIKTKNIHPYTCQFWRQFPDPNNIQEEQVKCQYESQSSPGEFCLYYAKxTVS
EIKRDWRQLAYSKKFPAPICKQERKIVVPKYKVKSLYQKCIAKAKKHHVESVxLINELFITQIESNTINIKELPTEDKRW
GLVNEVNMSNIxIKSKQKVSKSLSLKMRMKKPNTQRLEKVSLMMANSTATVSKLSDLNEYLFADGLHILHILKDHVVTLL
EANMKDTQHIDELTTAMLILSYIQNFRIPSTEGRIDxRILNGTWINEGLNIPHHGMQIVKxMSCSNIYDIKKTYTSPIKS
IWEIGIYYQIILPNKVFYTNWQVLNIGHLVKTGTQLTLTKIHQPYTHISQxCSELYYLEPKRCEQRDYLICEEINLHQTC
GNKTGSKCPVTGKAVSSPYLEFIPLKNGSYVVMSYAIDCNIPPYQSSIFTINDTVTCFEKILKKHLPKEQTVVLGNFHIP
KIQLRLPHLVGILAKLKKIEVKATDTWASIEEQIEDTKSDLLRLELHKGDTPEWIKQxGEALEDVWPAAASATKTIASFV
SSATKGIFGGIIDILTYTKPIVILIIITILIVLIFRILKWLPNSEKKKEQ
>RELIK_pol#LTR/ERV-Lenti 1531-4713 [Oryctolagus cuniculus]
IELKQRPTLKVNLGGKDIIGLLDTGADLTIIREQEAKGIKEGITEGWQNIEGVGGCSKLQKISQVTLKDKKGRKTKTSIL
ISPDIPINIFGRDILTKLGVALIMAQLSTQITPIKIKMKDPNKGPLIPQWPLTKEKLEGIKEITKRLLEEGKISPADPDN
PWNTPIFVIRKKSGKWRMLIDFRELNKLVDKGREVQLGIPHPGGLQRRNQVTVLDIGDAYFTIPLDKDFRQYTAFTIPEV
NNQGPGHRYVWNCLPQGFVLSPLIYQSTLRDILEPWRQQHPEVDLYQYMDDIYIGSDHSPKQHKLIIEKLRKMLLEKGFE
TPNEKLQEQYPYSWMGYLLHPNKWTLQKLELPELPEKPTLNELQKLVGLLNWMTQAVPGIKTKPFTLMMKGNQELNSIRE
WTPEARQELRTIRRLLQEHKPLSYWDPSKEVYCTVMMGGNTINYKVHQGSDILWVGRQEFPKVLAASPLTRALKCLHKIR
QECIIRIGQEPIYRLPIKKEDLDVMIQEDPYLHWVPQIECIHVPLMLRRALSSLQGHPVPGPTYYVDGGSKQGQGKYGFW
RSDGVKLVKESEGSNQELEKRAMLLALQEGPPIMNIVTDSQYVYTLIEARPLPVNIEEPLLRTILEAIESKEEIYIQWVP
GHKGIPGNENIDKLVSQINTTQINLVVQGGHIKEKEPEQIGYSISAPKDLVLMPKVIETLNLQTQITIIPGQWGWITETS
EMTEAKVRVVGGFISPGDQNPLKIRLVNLSQKIVYVKTGQLIAQLILMPVLHDISKAPNIFFLEHIETATDDHAKWHSDV
SYLRQQFSLPKIVAEQIIKNCPKCVHKGGTTPHISRSGPGLWQMDVTHYEARLILVAIETSTGLLWAKLIPKETAQETVW
GILELQNLFHIQALHTDNGPNFTAERVTGLCQYLNIDHTTGTPYNPQSQGMVERANQSLKQEMDKFADVVQTIEARLQLA
LIALNQKKRGGIGGYTPTERYIHQRWQELEQTLQLQKFKDKKLFCFYRLPNSKDWKGPTTILWKGEGAVVIDTPEKGIIS
LPQRHVRMVPAPGPQDLGISN
>ERV1-1_AMi-I_3p#LTR/ERV1 2389..6030[Crocodylidae]
RGPGSKATALRANARKDPMVQIRVGGRXYEALVDTGATFSMIPVKPPLAEESGKHVTVEGIEGRRTRLPVCKPLLTKIGN
NMLEHAFVVSPACPVALLGRDLLTKLQAEIFFREDQIVVRLPVKQGSNYQMALRTAETGPETKGIEILENVDSCVWADGT
PARAKYVNPVKIPLKEGEGPVRVKQYPLKKATRAGLKPLIEKFKRYGWLIEGSSPFNTPILGVPKADGASFRLVQDLRAV
NKKVLVDHPMVPNPHTILTQVPADAKVFSVLDLKDAFFSIPLHEDSQKLFAFEWEDPDTYHKTQLLWTVLPQGFVSSPHI
FGTALQKDLEHWKERHPEVALLQYVDDLLIASPDVQTGKRATESLLNTLGKKGYKVSREKAQICQPKVTFLGYEIEKGVR
ALSRDRIQAIQDMPAPKNPKELRAFLGLTGFCRLWIPDYGGKAKPLYESLTKEGLANWKWTKENQHAFELLKAALSQPPA
LMIPNGRKPYRLYVHENKGVASGVLTQPVGPTWKPVGYYSKVLDPVAKGWPACLRAVAATATLVEEAQKIVMGADMEIHT
PHGVPQILGGEGGKFLNPSRQSRYEIFLLSNPGLTFKHTTALNPATLIPEPGPPCHDCLEVLTQTVLIRPDLADDPLENP
EEEFFVDGSSSVIHGERHTGCAVVTLTETVWKEKLPANWSAQAAELTALTRALELGKDKRVNIFTDSRYAFATVHAHGLL
WKERGFITASGQRIANGPQIVKLLEALRLPKEVAVVHVKAHGKAADERQKRGNAKADVAAKEAARMGGEAVFQGSVHEVP
FFLEDCKVEYGPGSDELAAELKASKNSQGWWIVPGGKVLMPRGLLGEVLHRLHSSTHMGGTAMGDLLTRQMVAPGLYLEA
QRVASQCPTCQKVNPKSARPPAPMGGRPWAQYPGQAWQIDFAELPKSGRYQYLLVLVDQLTGWVEAYPTRTATASTVTRV
LLHEIIPRFLLPESIESDQGSHFVGKIVQEVSKALDIKWKLHTPWRPQSSGQVERMNRTLKAMLTKICIETHLKWPQALP
LALTRIRSTPRRGIKLSPFELMFGMPPRVLPAGWREPVTVELGKSEIWKHVIALQSVLSSLHRFAAPFQSLPLDTPIHNF
KPGDQVLVQKWKKNPLAERWEGPYQVLLTTHTAVRLANNDKWTHCSRVKPFRQEDTNSQGVVTPEADNTREQEAGKWTSE
PVGDLKLRLQRCGP
>CarERV2_gag#LTR/ERV1 860-2485  [Carnivora]
MPPGSRGGFLVMDLLYFSRNMGSSSVPKDSPLGCLLTHWNQFGLQDLRKKELIFFCNTAWPQYSLGDEEKWPINGTLSFN
TIYQLDLFCRKQGKWTEVPYVQAFMALNQDPDLRASCRMCLATNQVNKPPLDILDDDCLNRPIPPNKPGLLEESXASPNE
EDTGSVTIPPPYKPQDPSAPSPAGHTRSGTPYLPGVPPKSGLHPLREVANGEMGTIRVHVPFSMADLAQIKQQLGQYSEN
PSQFIEGFQQLSIMFDLTWQDIXIILTHCCTPEEKNHIWAGAQEFADELAARDRXRYXVGGSCCPXYRTXLELPRGXTGR
ERRDHMITCLIEGMRKGFSKPVNFDKIQEVTQGADENPALFQGRLIEAIRKYTNLDPTSPEGTTILNMHFISQLAPDICR
KLTKMALGPQTPTQRLLEVATGVFNNRDMALXQEKDRRAKXQGKIQAQILAAAIADSPQHQTNQGPKKKPVSDKGPGKTP
CYGCGQIGHWSKECPNKXSPPGPCPVCKKKGHWKRDCPHLQRERKTGTHFPAREQEPEDPA
>SpDirs1_gag#LTR/DIRS from_retrobase Now DIRS-4_SP in RepBase. [Strongylocentrotus purpuratus]
MRSRQAHAQSIRRAIEFYRESNFPSAVKIPNFRRFFGPPVSKKYFIRERNSPFSCFWKTFENLCCFYIKNRSFVPISTYT
MASPSGSTKQKTSETLSTAKAGTSPGETAAGPSTKPEPKRSSAVKSSDTKRKSVLAKPASNESKNSGPKKKGKKPEEKED
FTDLRGRLDKLESLMERMVDFLPCQSATRPTGDTPPTAYTAATNVRFREVEHDDDDFEHIDTGNMGQCPTSYDIGSMDEG
DVNETVAPGLDQENEDKVPALAQKFAIPTGVGGAIHDDLAKSAMYLMSHQLEENVLEEAGGKYPPPSNCTPLCCPKVNAA
IWENLSSQTRSRDLKLQRIQKPLTRGLTAFIQTLSPDSLSETQQDALALLCNTNFEINCLRKDQIKPDLNAKYSHLCKPA
TPVSQYLFGDDLTKRVKDLTEQQKAASGVVRGQRTPRPQYHPYRTQASSTFQYRRQGWNRATGTSQTFPSSRPASGNYNT
PFLGQRTQRGRPYRAPPHTQTMSMGKQTQSFQRPQAARRK
>DIRS-11_ACar_pol#LTR/DIRS 2296-4389 [Anolis carolinensis]
FSATRPPSRAPAPHDYSFLSSFTSSFVNLTTLERRQALPGVHFKFGSRLQKFFSAWAAITTDRWVLDVVRNGYSIDFHTR
PVVGRLRATLPSEVLWQEVRTLLDKGAVVPLHPSSFSRAFFSKYFLVSKKGGGQRPILDLRALNTYIWAPTFRMVTLATI
LPLLPEGAWFATIDLRDAYFHIAIASRHHRFLSFMIGNKAFSFRVLPFGISTAPRVFTKVMAAVAAHLRTQAVTVFPYID
DWLLVAGSRHRLLRDISFTLSLLQSLGLVVNHTKSNLQPSQRTKFIGALLDATSRRAYLPEERFLALRSSLLRIRHQPLV
RADHIQSALGYMASTTAVTPLARLRMRPLQSWFLRSFKPLRDEPSTLLAPPPHVRHSLLWWLSRTNACKGMPFRVRDPSR
TITTDASPLGWGAHTGRLAVRGQWTPAERRRHINLLELLALYKALQAFQDVLRGHAVQVRTDNTTVVWYINKQGGTRSRA
LLALTMTIWDWCVGNAILLSAVHLPGHSNTLADHLSRTPSSGHEWSLHRDEVAAVFRRWGRPTIDLFASQHNAKCDLFCA
WGAKPEGTRCLGDAFLFRWTGPLLYVFPPTPLLSRVVSKLYHDRADAIVIAPWWPRQPWFPLLAAMTDGCHHDLPRRPDL
LTSEDGTIRHPDIHWLHLVAWRVRPSRSPKPCWTYWQQRTDRPPSGHTPISGGSLQNS
>DIRS-10_NV_yr#LTR/DIRS 2938-3864 [Nematostella vectensis]
LLAPGETEQKKQYTTYIKRWVEYCQVNSVCTATPSLGQVLQFLSGLSSRMGYSAVATARSALSLFIQLDGVKLGDHPLVS
RFMTGLFNKKPALPRYVETWNPQIVVGYSRAYPTTSELSLKQLTLKLTALMALITAQRTQTLQALSLDGVTASRSQYTFR
VITPLKYTTRYGGKSKHLAPIVLKQYDTDVRLCVVTLLNAYLPRTSSIRTSQQLLLCYTKPYGPASRETISRWIKQVMKG
AGIDTEIFKSHSTRSAATSAAKAADVPLDDILAVAGWRSDSVFARFYDKPVQQEQSASVFAQSVLQAS
>DIRS-13_DR_gag#LTR/DIRS 386-1924 [Danio rerio]
MSKVTVEKGKETSSRSCPSACGFMISGRDSHPMCIACMGVKHAQASLANTESCVHCQAMPMRILERRLRVAASSKDDPVL
SAAPSSANDAKSSPPRDLASWGDIMEVESPEYEPLFDQQLLAGGDEMEGDEEEDDETLARLLRDEPDDEEEDVIRPSSHA
SRPTSAQSGEVASTVVDCDLTEVCKRAAAKLGVAWPVTPGHPGVKRDVYDGKRLAPRAPPAKQLLPALPDCITEMKRSWD
KPFTNRVPVKGYSSLDVSEMEGLGLSNPPVVEQTVALHLHPNRRAAVSSATPSLPGKMERFTASMYQKIYKSSALTVRAL
NVTSLLTAYQAELLEELGTQLDAGNPNPAVWEEICNITDLNLRASRGAVQSSGRTMALAVAGERSLWLNLSSIGDREKLD
YLDAPVDSSGLFGQSVASMRQRCDLKKKDEETFDLCLPRKRTSRPPVPATRPTPPTQGRKFVSASRPPKPHSTEQTARPP
AAPNAKPWGKQSFAAAAAKSRSANPSAKKKRDS
>PAT_1075-1881#LTR/DIRS [Panagrellus redivivus]
PAKMEKISEVFEKLPKEVSAAIQELSPDAIREVIGGLVDPERAQAYLKAESEKLKQAAKEAAETELCGREQGECPEPRTS
IRIGTGKEPDAAAENRELVAKCAAMMAMMTKAAAEKETPRTWSTKAYEYQHVFNASVKALIQAKEFDKAVVKLDARNADL
ALADKQPGILATLDTAKSYAQGSGESMSNALVSFLLIQAVNDRDTCSSQRSLPTRQGVWTGDRSKQRGGYKRYGQQPSSS
TAPPAKSFRCFKCGRNGHYASSCHAKTT
>DIRS_Nvi#LTR/DIRS 2156-4451 via tfasty with TcDirs1_pol, 2 frameshifts and 1 stopcodon. [Nasonia vitripennis]
STKHDVHTPSEGAEMTIQQSRAEQELQVEVDAPVSKIGGRIRFFEQSWQKITNDPFIISCVRGYTIKFDYNVIQPVVPPE
PHFSKEENLACESSINILLEKGAVSKCKPCKKQFISTYFLRQKPNGDYRFILNLKQLNKFIVASHFKMENVKTALKLLSK
DSYMAAMYLQDGYLLVPINKKSRKFLRFSYIKYLYEFNALPFGLSIAPYIFTKLLKPVVEKLRLENTILVIYLDDILLIA
RNREDCLRNVCITRNLLESLGLIINTKKRQLIPSKQCKYLGFILDSKHFSIYLTNEKREKIKNAVDKLYNGKSFKIREVA
KVIGTLVxACPAVTYGWLYTKRLERDTFLALNKNNNNGGYNNIFLVKNYIRDNKYHLEIFTDASLTGWGVFCAGEKVHGW
WENGESDHINFLELQAAFNGLKCFAKNEGNCEILLIIDNTNAISYVNRMGGIKYPKLNNIVRDIWQWRESRNIFLYASYI
KSKDNFEADTDSRRLPPETVWEIASWAFNMIIKSFGVPEIDLFASCLNAKCKKYITWKKDPDSIEIDAFTIPWTNLKFSA
FTLFSVILKVLRNIIIDNAEGIVVVPYWPTQSWFSLYKSLATTPFLYLGPNPKLLSSPYSKSHQLSQKLILVAAKLSCNH
TREKRSRAETTLARYGNPVNKWWNYCREKNISLYEADTKDIIEFFTRQSEVVKSYSKLNIYRAALSLIMNNRLGEMPEIS
RFFKGVANQKPKNAKYNEIWDPDRVLTFLSILFSNDALSLENLTKK
>ERV1-1_XT_gag#LTR/ERV1 512-1270  [Xenopus (silurana) tropicalis]
MGQEASKNKTISATDDESNMHRKDPRLTKKCALWRTRYQFQGHLHPKQCAQLVAKITDECKGDDKLEKKYGLDISSNNDS
LIDLESGVTDVPRYHIPLTPQPSQSMTNAAQTVSPATSQASTVPYTPQTVESRKKPWSPSSHPDWAHGRAVPYPAYDFTS
PHPGLASHRETLPRVAKRNNPYGSARLALCNATAPPDEIPPPYGSLSSPGNQQLQQYPMIELPDGVASTTHVYRPWTEDD
MMAALKGIPPPAG
>ERV20_MD_gag#LTR/ERV1 379-1965 via tfasty with HERV4_gag, 4 frameshifts and 1 stopcodon.  [Monodelphis]
MGQRQSIPRDSPLGCILKNWKKLALNSLKKKQLISFCNVVWPRYILGNQETWPIHGTLNYNTIRQLDLFCRREGKWTAIP
YISAFIKLSQNPELRRLCRMCLATSLLTPSGESPQQDVLDDLALPSNLASVRGREITSPTLAAEQSRPSPPPNxPPTTES
PPDPPGSSPQPSAPKPPPYSRGSEPETTPLSTPNRNILLYPPLPKDNVTSPIPQPSPLHTRSGLSYATGPTSFPMREVPS
PDGLAQVHVPFSMTDLAQMKEKLGRYSEPYKFIEGFKSLTLQFDLSWADLHIIISTCCTPDEKKRIWDLAVEIGDEKALA
GTWAGVPGATAVPGQDPGWDYMNERDRLRRDHMIDCLLEAMQKGIRKRVNYNKLKEITQGKEENPALFLSRLVETMKQYT
NVHPDTDEGVLILRLHFIGQSAPDIRRKLQKLDLGPQTPINQLMDAAFKVFHNRDLVETEGQRHEKLLTAALTSLTYGQR
PRGSCYTCRWDGHWSKDCPSKGKRPTTLCPACGQQGHWKRQCPSNQRPQ
>ERV15_MD_gag#LTR/ERV1 883-2612 via tfasty with MuLV_gag, 2 frameshifts and 2 stopcodons. [Didelphidae]
MGQGQSTPLDLVLQHYADFKSRAANLSLTVHKGKLQTFCNVEWPTFGCGWPRGGTWQNSVISAIRRRILLPGPEGHPDQV
PYILTWQDLALDPPPWLKPYTEAVPSxWLHxTIRPSPGGQPEKPNPEKPFPPLPPPVLPPPEEPLPDPPLPPPPYNPQLY
PPLPLDGNEAAAVQGAGLPSPPPAHRTRGRVPSMQLPPPIPAEAPSSTTVLPVRTVGPMVEGGPLVFQYWPFTSSDLYNW
KHQNPPFSEQPQKLIDLVESIFLTHSPTWDDCQQLLRTLFTSEERDRIIAEGKKAVLGDDGRPTTDPARLAAAFPTERPD
WNFATDQGRERLQSYRQTLLAGLRAAARKPTNLAKIDSVRQGPEETPAAFLERLQEAFRIYSPVDPTAPNSQTAVLLLAF
VNQSAPDIRRKLQRADAFTAQSLTELLKVAEKVFNSRETPEERADRLRQEDIARQEQRQKEAEERELKRLQDLQSREEKA
RKQLMRTQQQTTRVLVAALTQSQPPPPGGQPPDQRPRGPCFLCGKIGHWQRHCPQKIQGGMRQGRQGPPPPRRWDSPSNT
DWGRPNRNVIAFAEDD
>ERV24_MD_gag#LTR/ERV1 792-2400 via tfasty with GALV_gag, 1 frameshift and 1 stopcodon.  [Monodelphis]
MGQSSSSNLGTPLSCVLKNFRHFKKVAADYGIQVSPGTLRTLCELEWPTLGVGWPPEGTTDLSVSYVVRRVISGKSGHSD
QIPYIDVWINLLTDTPKKLKACLSGQNYSAKTEAALLTNSLSxEGKSKPPRGGKNTPPPVLQGDPEEPPPYVNRESLLPQ
PLPPSPSSPLSLAPPSGSLYPTLPSEPTPMTSPPHTRLGTPYHYTQNSGQAGVKIVAKSQLPLCQAGPGTGEDPQPFLVY
APFSSTDLYNWKNQNPSFSDKPQGLISLLETVFFTHNPTWDDCQQLLQVLFTFEEWDRIKREAVKTILGRDGQPTTDQHH
IETVFPSSRPDWDFNSDQGKEALNRYRQTLLRGLWAAARRSTNLSKVSEVTQGPDESPSAFLERLMEAYKTYTPVDPKAP
ENRRAVNIAFVAQSAPDICRKLQKLEGFEGKLLSELMEVAQKVFNTRDGTDNQNTKKAARAVLAALADERTCQPNKVWDG
RKRSSGDDRGRGRGDVEKRMPRLQRDQCAYCKEKGHWKNECPRRATGREVVPQLLG
>ERV-1_AMi-I_2p#LTR/ERV1 6162..7904[Crocodylidae]
MLNFSKTISPMEGEEKSLVSFSGATGGSNQNWKVTRLVSVNNLHHQMQKFQLAWTCHPSLSIIGMPLLQHCCVDLANQLV
WVKGGPTQQPMELACHSVKALKPAVLPTGWETWGDVWAADSLDAGLLKNQEPVRIPGGTPPKSLQYPIPREAVQSISTVI
QTLRERKIIQPQVSPANSPVWPVRKPNGTWRLTIDYRKLNAVSTPMAPVVAMFPEIVSQLTNQAQWFSVLDISNGFWSLP
VHPDDQWKTAFTWQGLQFVWTWLPQGYHNAPTLFHQALKKVLLPASEHCLQYVDDILIWGVTQEQCHHRTEAILQLLQNA
GLKVNSTKAQLIKQEVQYLGLTITCQGKQIFTDRLSLICQMLPPTDRKSLQSFIGLVGFSREFIPDCSEIMEPLHQAVRQ
TKWEWSPECQAAFIKLKDRLKRAPALSARIPNIEVEIWCRATDRHLTAVATQQMEMNGVDVPLAFASRRLSLTEQKYGTC
EKALLSMYWALQKFKYLIGGEAVCIRTPHDPRQLLRNGELLKGGLTTPRIGRFLLALDNPRIRFRPLPSAEINIFGWITP
EKSHACYPGQTAWPVFIHSVSSQQVQSGEILWFIDGSFAGTGEEARAACAVMGPQETEAWLLPGATSQEAEAVSLLIALQ
NMSNNPCLSHVIVTDSEYVHKGATQMLGWWVANEFKDARGSPIKHRAIWERIFQVAQGKQLKMVKVKSHRKTGWGAAQNN
EVDKAARSATKEWPLWGQVKAATISQVNAIEQWDAQCDWTGDPPPPQEIHQVQGIWVTKELPVVPYIPQPSREVLLRWAH
GSQVGGHPGVQETIKTVRSLGWWPNLKQDAIAWAQRCLNCAQHQPNRLPNKGQLMHQDLVGPWERIQIDYVGPLPTTAKK
HHFLLIIVDSFTKWVEAFPTHNETAKTTAEVLVYQVFTRWGVPKVIDSDQGPAFTATLTKQISEILGIEWKWHIPYHPQA
AGQVEHMNQTIKQELQKGVSITGKNWNEILPFILMRIRARPAASTKHSPFKLMMGREMPRWGNLLSLIPEDVIVREATDQ
WVEMLVDAVNKSHQDAALAQQRAREYMKRWYGPKHPIEQQVEVADQVMYRAPGSPAFPKARWEGPYTVVAKLGPSLVQLE
GPQKRFWWAHWSQIKKVNHLPNQSKGKDNYVLQDPKDQFQDAVHQSNSIPKPLVDHQPQHPTPSKRLITYLISPKERTIM
FYRILKISSRMQCIKATAYLNLWWIISRSILPPVEGYVGFAYYPKNSPAADGSNHPDYDTGDPSYPKSPEPTVGPKPMPP
VSPPHYHCGISGCKLLDYGSPVGPTYKDPKGHYVTVEQVANWHWWVRQNIPWWQGGTCSGDGGTGWYWGFIPYARHAPYG
DATGCSGVLPLAPKNPSQLSPKPGISTTPTPVVEESTEEALAERPIVPPPQNEFLGGWCATYLYQQKGTVRWE
>ERV25_MD_gag#LTR/ERV1 205-1863 [Didelphinae]
MLQKALWTLLVVAILAHWYYSIFGTITNIINDMIGAAVSITKYWDQISLEISTKWLTLPAXYGTMVVLWQLYSTIKKGMK
IIMGKNXINNNIDNRLDLLFSQMATITEMCQEFTTKKNEKLGKGKELVTGEDTKDTDNDKDKCKDTETPITTALTVGVCT
EKIMVDKQTNTEPEEVPGAQKIMPLRDYAKVTPDSGVLHMKVHKSFSIQDLDSLKRRMPKFCSEPFKCLRELKRAFKLYD
PSFQDVEILLSELFSPQEHAQFIKRTREDDNLTSWPEYFEDLDFSRPSNLTYLRKAREDLLEGIKXFCNRPNAWGKFDRL
RQEQTEHPSVYIDRLMENAEAILGYTQDSQEAIPHVKRQFLKGCVQNLKHFXKNFCPNXESLSXQDLRDSATYLHETHTE
QQKEKEELKQKLEETKETLRQKEIEEVKNLATIRTFPRQRPQYQARGQRDNRKCFLCQRVGHIVRFCPMKAKYEQGYSRG
SQYQNRATQNRGYNNYGRQQTYNDTYKPKCCDHCKLKEEATPDLKTMQHLISQGTKPKYSEVLAKGNPRYSA
>ERV10_MD_pol#LTR/ERV1 2618-6181 via tfasty with ERV33_MD_pol, 4 frameshifts. [Monodelphis]
AHIEGTAVPILVDTGAEHSVLKQTFGDVTSKSSLVQGVAGSRPYPWTTERTVDLGSHTVSHSFLVIPDSPAPLLGRDLLH
KLGACIHFHQDSVSITDAEGTPLTILTMALQDEHRLFSAPISIDIPPHIRPWVEAIPRVWAEVSGVGLAIHHAPVVIPLK
AGSTPVRVKQYPMPLAARQGIQPHIESLMKAGILIPCKSPWNTPLLPVRKPGSGDYRPVQDLREVNKRVEDIHPTVPNPY
TLLSNLHPSLTWYTTLDLKDAFFTLPLAPVSQPIFAFEWRSPETSQVVSQLTWTRLPQGLKLSPTLFSDALAHDLEEFRL
QLHPDVTLLQYVDDLLIASPSEEQCKEATRELLQCLQDAGYRVSAKKAHIARTEVTFLGYRLKGGFRWLTPAMTQSILAI
PTPSSPRKVREFLGTVGYCRLWVPDFATIANPLYQAARESREWTWTPEMDSAFRNLRTAMLKAPALALPDPEKPFLLFVD
ERQGVAKGVLTQRLGPWDRPVAYLSKKMDPVASGWPACLRIIAAVALLVKDADKLTHGQALTIATTHAIETVLRQPPVRW
LSHSRLTHYQSLLLNEPQITFKVTTALNPATLLPSGEATPSLHSCQEILVEAISARPDLKDTPLPNPELVYFTDGSSFIT
PSGARVAGAAVVDDEGTVVWAAKLPEGTSAQRAELLALEAALRAARGKRVNIYTDSRYAFATLHVHAPIYRERGYVTSTG
KPIAHLHDIQELLGAVWEPRQVSVIHTPGHQKGDSHPALGNRWADEAARKAAMRDQAPMPSVLTLTSSPDDLPIPTPPSE
PAQYSEEDRIWVKGKQEGAAPRDHETFSRDKEGNLLLPHLASLGCLLATHLHCLTHLGHRNLRELLRKGRIRFRGMDSFL
EELVHKCTTCQLVQPGKPTPAPGTRLRGTRPCEHWELDFTEVKPGKFGYRYLLVMIDTFTGWPEAFPTKTETAQVVAKHF
LEDIIPRYGLPASLGSDNGPAFVSRTIQLLAKGLGVNWKLHCEYRPQSSGQVERMNRTLKEFLTKLTWETGRDWVTLLPL
ALFKARNTPGPLSLTPYEILYGSLPPILPSTPSPEKTPPHLREFVLSLSQIHTDLWPRLRARFQPPPAEPHKLQPGDWVL
VKRHRKETLQPRWKGPYVILLTTPSAIKVDGIGPWIHHSHARPTAAPNPDWQAKIHPHNPLKLTLSRT
>ERV1-4_XT_pol#LTR/ERV1 1474-5025  [Xenopus (silurana) tropicalis]
MLIDTGASVSIIHTLDPQSHPLSTGQKVGLEAFQGSHAEAYQSSKTKLLIADAAFDLSALLMTLPNSMSILGSNFLKQHG
AVIDFTNSKIWFKGNGNYCVISDAHAVSAIKNPEFFEMPTHSDPRVAQIIHECTDVFGKHKHDCGRLEGEVSIPGRAHEP
QKQYPIPKASESYIQNTIDSLLQQGVLRVCESTTNSPIWPVEKPDGSWRLTIDYRKLNSVTPACAPVVRETPTLLSSIPP
RAKYFSSIDICNSFWNIAVELRSQYKLAFTWKDQQYTWNCLPQGLHNSPTIYHKKMAAVLKGFTKPENLLQYVDDLLLAT
ETEEEHLSLLKELLHLLHRAGLKVNPKKCQFMQTSVTFLGMNITPEGKLPDKHKMDTIQRLNLPASKTALRSFLGLVQYQ
RDFIPFFADKARPLYDLLKKEVPEEDIRGEWREPHTQAFNVLKQSMMEATALLTPDPKKRFHLEVAATDTALAAVLCQEK
HGKLKPIAYASRVLSAVEIKFTACERHLLATFWAIEHFTYITGLQSLTLHSPHTPLNLLLKPGDTTLSSARLSKWTLMLM
QRDLDITPKQTTLLPAFLLYDGEPHKCPLPSNLNLPPNPLSSDQVPGIDVYCDGSSYHDQGTPYTGFSVILPNHIVMHKC
LPHSSQYAELAAIACTLERCNTEACNIYSDSAYAVNTLTMLPLYVNNGFRSSDGKTLTHASLLKYIWDLLQARTLPCALV
KVKGHSKGSVHSEKNSLADQCAKKAAKQADLWSPPSAPEISALTGNTPPDLVSLQKAYEPYKLVKEWHLKGKNELAPNEW
AKYTILSPGDSQNQILLYQRDLPFPVVCVPPECADDFFQIFHSHPVGGHFSAEKTLHKILQSVWWPSIKDDVNSKCSSCL
PCLQVNPPSCTNRSLLRSTPPAEGPWSQIQIDFIGPLPKTPGGFSHCLVVIDVFSKWIEAFPTRNQKALTAAKVLISELF
SRWGLPKVVASDRGTSFTGQVFSQLQKLLDIKHELHIAFHPQSSGTVERGNRTLKTMLTKFCAEKPSTWAQMLPLCLMAI
RSTPHSTTGVSPYQAMTGRLMRMPGNLLIPSATPLLQGAVTEAWVKNVAEHINEVNKFVARNIGHSKSQIKKYFDKKVRL
FEYNVGDLVMVRDFGKKEHSFTPIWRGPFTVVDKASPATYLVKTVGGKGKVTLKWYHINQMKNCRTVNKKPIILSDMERH
IYEKKHAVLCQGKGGCLGRSIMATAMVFVVTLCLTLINTSSEQIDYPNQDNSAILTIRNVKKVTAVITMTIRDMSNGVVV
NGTMLSGSEGEWVIVQCHITVSQLIFPGKLIRWTYPGGTEIHTSTELYWTNTTEKSTQSMLLLKNISLTSNGIVTCSPEG
DWAEGVWDSKIRINILKSEVCPELQPISLSGLTNIWGALQQCSIHSYSSYSKF
>ERV1-2_AMi-I_2p#LTR/ERV1 2183..5755[Crocodylidae]
DRLRDSNFILSPLLPVDQSGPFVECTIAGKRVTCLVDTGASRSALRLFDLPDPPLSNAVVNAVGISNQVISHPVTQPLSV
TLGPISDHHAFLLSPFTPVNLLGRDLLCKLGCTIYCTADGVFLEVPAENECAVLAAMIEPATPPISTTNPDFKEEILKQV
PPALWSQHANEVGQIHTAEPVKIRLDPRKQLPRISQYPLSKEAEQGIAPVISSLLQQGILIPTSSPCNTPILPVKKPGKT
TYRFVQDLRAVNSVVLPIFPVVPNPATILSCIPPEACFFTVVDLCSAFFSIPIHPDSQFLFAFTYKGLQYTWTRLPQGYT
ESPSIFSQILKKDLDDIQFKNCSVLIQYVDDLLLASPSFEACKIDSLHLLTCLALKGHKASKEKLQLCLPKVHYLGHDIS
AGERHLSTARVETILKIPRPTTVSQMRTFLGMAGYCRQWILGYASIVKPLQNLTLKDAPEPLQWSPEAENAFSVIKTALS
QAPALGLPDYSKPFTLFCHEKDGFALGVLTQSHGDKHRPIAYYSTALDPVATGFPPCLRAVAAAAILVESSANIVLASPL
TVAVPHSVAALLLKTKTQHLSNARLTKYEILLLSAAHITLVRCPVLNPASLLPAPSDGEPHDCLAVTAHLTLPRVDLKDI
PIPNADLVLYVDGSCLRNSKGSLVAGYAVCSQHEVLESNFLPSVYSAQIAELVALTRACTLAKGKTVNIYTDSRYAFGVV
HDYGQLWKQRGFLTSNGTPIRNGSYVAALLDALQLPVAVAIIKCVAHQSSQDEVTRGNTLADSAARAAALSPPQAEQLFF
SHEQSPIATLHDVALLQDQAADSEKDTWRLHGCILHPDHLWRSPDGRLVAPKVLLPYLARVYHGVAHVSKGGMIAAIQPD
WYAPNFPSIAQHYCQACPVCQAHNVGKPVKTKKAAHPPPWGPFVNIQIDFIQMPKCCKYQYVLVIVCMFSSWIEAYPVTR
ADTKAVTKILLKDLIPRFGIPLTINSDRGSHFTGQIMQEICKALQIRQNFHCPYHPQSAGAVERQNGILKNKLAKICAET
GLKWPDALPLALMSMRSTPNRKTGLSPHEVLMGRPMRLPSSPPLPPSQINIHLADDLVLQYCQALMKCVKAFRSQVQEAL
PREPEEACHSLQPGNWVHVKIHQRKSALEPRWKGPFQVLLTTNTAVKCQGLSTWIHASHCKKTVPPDETKD
>ERV1_DR_gag#LTR/ERV1 858-2288 (gag and pro broken up from a single ORF) [Danio]
MFKKNARLIPTNEKGGLATPLWSDKEFKSLLGVHMDLIVTEKVRRELTQKYEIHPDKTWSVDECKKVLGASIRKNNVKGI
ICCHREFALSLATQQAKRNSDLEEQNKQLRARVASLTKKLNRNKASEKADVEEISESDNVYPDLQTLFETDVPVESVNVC
GAKRKSQRIEEIESVSPNASVVQVQSVTKALGPKDIERLSQGLPSARINFSEFRRALISKMRLYDMSLTEVTQLLSQILT
ESEFNSFESAVSDLQHASKDDLREGVLKTLKNIMGPKIDWSRVTSCAQKKDESVNEFTERFCQTAIAYSGIVDNSESVLH
EKGPLVRIWSDGLVTEYRKALPFLDLTWFDNTIKSNLGKLAAWEKDADVKATVRIAATTFSSKNLDNRWPKREGKCNYCG
KLRHWEKECRKKMQDSKRHAMHNSAPSQPAYNPEVVQPLSTAALGQLAQALLKAQQEQEKKLIVGAVSSYLSPVIHH
>ERV9_MD_pol#LTR/ERV1 1593-6035 Region 1593-2711 encodes protein unique (so far) to marsupial ERVs.  [Didelphinae]
SQAHKIYSVTNGDRRNSENEAAVKNXRKXLGNGENSVQESESVNDSHCNKARERQRQIKETEXEIKEIXSQIVNEIRDFD
KXCIVTKQEKXVKEIKSFLENFFQCRVDNGIELCKRKRKKKSQELKQKFVTDTETHNFNSLKVTVAKXENALKPFTDDLP
PNLVNSVNSFMAQVPLENTSNLNPEADTFHPAMSDIDKEKLTENEAXITFEHNNXIQSXGGDMTVKFEXGDGMAVLVTTK
DSVGANVLRGKGESSQSNXXDLGSCSNVVENTTSNVDFIGNESNQEELTXXHIQLAEGSKDMSSNSVAINSLATHRPEPY
VWIKVGKKNYKALLDTGASKSVLKTCPGDTDIGGMVSVAGATGQIQQVPELKSTMVKLGPLTIDHTFLLIPSCPDNLLGR
DFLCKIQATLQCEKSGEIYLHLPKNSLKHYPLLYLEQLEEEPEKIQVVTSMYDIPTDIPQGVFAKHQNDVGQIKSITPVR
IEVREGIPPKIPQYKLSREAREGITPIINSLLEQGILRPMVSEYNSPILAIKKNKLNEDGTPAWRFVMDLRAVNNFIRKR
HTVTPSPNDIITQIPAEARWYTVLDLSNAYFTIXLHPDSQNIFAFQWGQTQLCYTRLVQGCCESASIFCQLLQRDLATIT
FKXSRLIHYVDDLLLASPDPKTCLEDSKKLLIELYKRGHKVSKKKIQWVLPTVEYLGFVLEGGTRKISNKRIADIQKLGI
PRTKKELRAFLGVAGFSRQYIVGYSHISKCLTDLTKKDIKEPLQLNKEHLHALSQLKGAILSAPALGIPDYKKEFHLYVH
EAKGIASGMLAQYFGLNLRAIAFYSSILDTVAQGMVHCLRSVVATALMVKKSYDIVLGCKLHVYSAHQIEKLLXSQNMHS
FTNARISQYEVILLGNDNITIHRCAPLNPATLIPDLPMGGEVLHDCDQIVELMHRPNEHLKDTPLIDPEIELYTDGSSYV
XDGRKFTGAAVVDNDKTLWHASLPSHVSTQGAELKALLMALELARGKRANIFLDSQYAFSTVHWSSYIWKNRGYKTSAGK
PIAYGNLIDHIISAVDFPKEVAIIHCKAHTHGKDRISLGNDRADITSKYAARFGPHHVLNFSLIERHNLTEAYDGEEIQS
WKEQLGAKLIKGIWIAQGGKPILPKKLYQHLCTVIHAKGHYRVQGILDTIQRYWTAPGITTNAIRTCQACETCRRYNQGH
FKSVALGGRPLSYMPFQCIQIDYINMPKDKGYKYALVIVDRLTRWVEACPSKKSDTATVVRFLLKEIIPRHGIPDTIDSD
KGSHFTSQVLQEIYKNLGIKCNYHSVYQPQSSGQVEXMNKELKTQIGKLCSETHLKWTDVLPLALFNIRTRPRTDLHISP
FEMLYGQPLWHGRTVKPPYLSMLRGECVLHEYLKQIQRRIEELRKLGLLVQRIPLDFSLHKIKPGDKVYVKNFNRESPTE
PRWIGPTTVVMTTPTSIKVDQRDPWFHASHVKLHHTHNIE
>ERV1_DR_pol#LTR/ERV1 2289-5756 (gag and pro broken up from a single ORF) [Danio]
NDKRLFVKGSIQDKEIDFLLDTGAEITVIPMQLAKDFNIPYNKTKLSLTGVIGEDSILFETPPIEVQFGPKTLTTKLLCA
PLNTGAILGMDILRQLHLTLDMSSESASIKISSVQVSTDNAIAPEYAFLQNHPIWAKEKDECGLLTGVEPVKLTGTPPPV
TKQYPISKEAIQGVKPIIEKLLKQGVIVKTNSACNSPVWPIKKANGTWRLTIDYRVANKHIDKITPLVADPSTICNGLPL
DCKIFTIIDMSNGFFSVPLHSDSQAWLAFTVDYEQYQWTRLPQGFQNSPTIYHQAVRRDLCDPECPVKKSTMIQYVDDIL
IASTDHEVHKTELASLLDYLHKKGHKCSFHKAQIAKNQVTFLGQTIGTGNRSITQDRAASVKIIPPPTTIKALRSFLGTA
GYCRPWIENYASMAQPLYDILKGQVKDSDTVCMEETQLNAFNNLKTALCQAPALGIAQSDRPFVLYVHEHSGFMTACLMQ
DHGGSLRPIHYYSGKLDIVAQGMGPCLRAVQAVHLALQASAVMVLGQTVNVRCPHAVSALMNQAKVTSVTSSRWGNWLTT
LTAPNVVLQRAPITNPSSCMMSALTEVVLEDEGEMTHDCVTLTYTPTSEVAETPIENAEWELFVDGSAQIIDGNRRAGYA
VTSTTEVIATGRLPDHFSAQAAELVALTRACTLASGSVTNIYTDSRYAFGVIHDFGVIWQSRQFLTSAGSPIKHAGLVKD
LMFAMKLPKKLAVIKVKAHLTANTMEAKGNALADVAAKQACHYANVQVCSGSTAQKAILPPESIIDLYKDVPLYEAWTWL
DKGATVDSSGCWTKEGKYVAPESLLPYLAQQIHNLGHSGPATMNHRFSNQWWNPKFRNIATETVKRCVTCQKNNDMPAAT
TAATHTPAPPGPFRHLQVDYISLPPCKGKTDVLIVIDKFSRWVEAYPTGRATAAHTAKCLITDFIPRWGLPDSIDSDQGT
HFTGQVVEEVSKMLKIKWNLHCPYRPQASGQVERANRTIKTRLSKMHQEGVSWVEALPAVLCSMRASPNRSVGLSPHEII
TGRPMQMPGVIDLRNADVHIVSDALIAYCENLTKSVQNARERVVSCWQNPPEGGHTIIPGQWVMIKSFRNKPLEPKWLGP
HQVMLITAAAVLCQGRKTWTHVSHCKVVPPPTGIG
>HERVK11D_env#LTR/ERVK 5759-7750 via tfasty with HERVK_env, 1 stopcodon.  [Primates]
MTLILLPSVTPQTVKNYTYWAYIPFPPLIRAMTWMDAPIEVYVNDSIWMPGSVDDRCPAQPSEEGTPFNITLGFRYPPLC
LGPTNGCLSLDIQTWAVTLPSGHSVPPLGHLVSGLSLKPLRQIKTGIADYIHTSQYKPLGPACPLNLSSNADKLIWKDCV
SSEGTVLFNSSHYTIVDWAPKGHITNDCSQGHRDCQHFLYDITYQKSSDNPPLLYHRFNSFFPFKWKGAGVAPPKPRLIV
PHLGPEHSELWRLTIAMTGMRVWAGESVISKSTLSPQKLRQQIDLHYYFHTAKNITMAIIKRSIQRWDSKDYEDLYPPVA
NVPPPPLIQPIPPTPHSQKRVPSQNIYTIYMESNKTIPLKSCVKPPYMLLVGKMHISSKTNIITCVNCYLYTCIDSSFNQ
YHSILIVRAREGIWLPVALHRPWESSPSIHVINNILQKILKRSKxFIFTLIAVIMGLIAVTATAATAGVALHQSIQTVHF
VDKWQKNSTRMWNSQSGIDQKLANQINDLRQTVIWMGDRIMSLEHRLQMQCDWNTSDFCITPFQYNESVHNWESVKRHLQ
GSEDNLSLDISKLKEQIFEASQAHLTALPGAEVLDGISEGLSNLNPIQWVKSLGGSTIVNFVLCIICAIGLLFMCKIGKN
ILQSNRDQCQAMIAMVHLNQRKGG
>HERVK9_env#LTR/ERVK 4892-6020 Fragment (two large internal deletions and non-functional), via tfasty with HERVK14C_env, 1 frameshift. [Catarrhini]
MSQMPRKRFREDPKGPPVAAMSRLMLRRTPTVTSNTRRTQPPTWGQIKKLSQMAEENLRKAGQPVTMSNLMVAMIAVITT
AMSIPSTRADTENNYTYWAYLQSWLAIMPGCNHSMTQLHMLSDLSIYHNKSAPIIEAYCPQKPICKQNWTWPEKMNVLVW
EDCIAEQAEVLHNDSYGIIIDWSPKGMFSLNCTSQSACHGHTMFSWSEQNGQMVEMIRSMARVPIIWNHGGIVAPQPQMI
WPAVGAKHKDLWKLLIALNKIKIWERIKKHLEGHSTNLSLDIAKLKEQIFKASQAHLTLMPGTGVLEGAADRLAASNPLK
WIKTLGSSVISMMIVLLICVVCLCIVCRCGSRLLREVAHRDKAAFAFIALQTKKGD
>HERVK14_pro#LTR/ERVK 1657-2604  [Primates]
QRWTTSFRKXEEGPASSPSTNRGISGTASALTNVQQLSPATAGSAAVDLCSTIPISLLPGEPPKKVPTGVRGPLPSGTVG
LLLGRSSLNLKGVTVHTGIIDSDYTREIQLVISSSTPWSASPGERIAQLLLLPYIKLGSSTVKRTGGFGSTNPAGKAVYW
VNQVSDKRPICTVTIQGKDFEGLVDTGADVSIIALNQWPRHWPKQKASIGIVGVGAASEVFQSSLILPCQGPDGQEGTIQ
PIITPIPVNLWGRDLLQQWDAEISIPMDQYSNNSRQMMKNMGYLPGKGLGKNKNGQSEPLELKGQTDRTGLGCHF
>IAPLTR3_gag#LTR/ERVK 525-2249 via tfasty with IAPEz_gag, 2 frameshifts and 1 stopcodon. (gag and pro joined at z) [Mus mouse genus]
MGSSQSVITPLQAVLKQRDLQVTSHTLQNFVKEVDRVAPWYACSGSLTVASWNKLGRDLDRKHEEGDLRLGTKAIWKLIK
NCLEDETCRPAIVEGQGTLEEVQDSMSETERSERIRAQKKKCLRKKGPPQDSEGRGEKKKGSETEPSTKKKPYTNFYPIH
DLEALEINSSGSEDLDPSEEAKLEEEAAKYKEQRYNPDRWSRSRSNKKGSISATVPTAPPLYELQYSANSFFPQEELKKI
QMAFPVFDTGEAGRMHAPVDYKQLKELAESVCNYGVSANFTLVQVERFANMAMTPSDWQMIAKATLPNMGQYMEWKALWY
DAAQNQARVNTTAVDDNQRQWTFELLTGQGQYATNQINYPWGAYAQIGAAAVKAWKALTRKGEAGGHLTKIVQGPQEAFS
DFVARMTEAAARVFGDPEQAMPLIEQLIYEQATQECRAAITPRKKKGLVQDWLKICRELGGPLTNAGLAAAILKSQRRPN
FNKQKACFNCGKAGHLKRDCPVLERARGAVLCSRCRKGYHKASECRSVRDIKGRLLPPIGEVNPSQSKNGVLGPRSQGLT
NMGAVLSEARAGQRR
>IAPEY3_env#LTR/ERVK 5490-7260 via tfasty with RNIAP1b_env, 3 frameshifts and 6 stopcodons.  [Mus mouse genus]
MLTSRGLLLILTMLNLSQVPSIMGEQRWAILSAFPKPMPVRHDAIVFPKFFTTNKTVDLPYLPYDPTRAPLGENRSLLEQ
GSLCFQINGPGKMYQPHSPSLGNVxxAPRRLGEHNPRYFQRRYNHYSNHMDLLAGGNLGxWYISTTxLFKQVRTCPHQPR
IAPHCSLEDEGLILPWSDCQSSITRWADQSKTFSFSPNMMVDPEKEFVMKKGLFIQDIRMHPFHKWLLCGVNGSCTELNP
LIFIQGGAVGKASFTGISRFAQYWGIHAASLDYLWIYYIIPSVEITGFNKTLINQTNYLPTPVCVYPPFLFILSNDSFED
CLNDSCWISQCWDVTKDTRAMVARIPRWIPVPVETPSTLSLFRQKRDFGITAAVIIAISASAAAATAAGYAMASTVQAGT
KLNQLSVDLTDAINVQTSASAQLKGGLMILNQRLDLVEEQISVLYQLAQLGCERKLGALCITSVQYENFTRAANLSRQLS
LYLAGNWSEGFDETLEALRAAVLRINSTRVDLSLTEGLSSWISSAFSYFKEWGGGxFxFGAAICCGLVFMLWLVCKLRAQ
QKRDKVVIAQALAAIEQGASPEIWLSMLKN
>GGLTR10D_gag#LTR/ERVK 248-1942 [Gallus]
METVIKVIAHACKTYHGKHAPSRKEIAAVLSLLNEXEGLLTSPRDICDXNNWDSITAALCQRAMATQKTAEXKXWXLILG
ALKAARVEGKVLAEARYLLGLGGGGETXDPVGSDGGSGAVSCRGREETEPPMTVGEMAPAEPTALSSKEDKQQESEXSLS
RPPPPYPNPSGGTLYPLSELRQCYLTQGGGGSCDLHGQDQLSAHMGRDQTKGPSNADRGHSLPSLVTPRGGSASDSVEEK
EGTGFECRGRDQMTDWNGIRSEALGKGIVPEAFRVIVSDRGPEWVPPDPGGVTRLVEFMDKRGLKSPLTLNALQTLAALG
PLLPRDITNLMRMVLRLVQYTLWETDWMAELGGRAGAAGVGPRRSLHGTGIQRLSGKAVGVASPQGQLARLRPGELIAAT
DAMVEAFNKLVHKAEPPAPCTDITQGPNESFQSFADRLLAAAEGSDLLEPAQGPVIIDCLQQKSHDNVKALLRAGPSTLN
TPGEVIQYVLDKLKVAHLTNEGLATAIVVAVGPRQQRSLQQQGLCFRCGQYGHVRAQCPCGGGQSGPPDRRKGLLKGIRR
RVCGS
>ETnERV_pro#LTR/ERVK gi|38093474|tpg|DAA01917.1| TPA_exp: pro protein [Mus musculus]
NEGFEPPGAGKRGKGSAPGPELLKEDSLWGYKSAAQPTRSVLELVRSNPGNARLDLCSTVHVALTPEVGVQTLPTGVFGP
LPVGTCGFLLGRSSSIVEGLQIYPGVISNDYEGEIKIIAACPRGAITIPANQKIAQLTLIPLRWSLSKFFENEEGQNNFD
SLGVNWVKSITNQRPNLKLILDGKSFEGLIDTGADVTIIRGQDWPSNWPLSVSLTHLQGIGYASNPKRSSKLLTWRDEDG
KSGNIQPYVMPNLPVTLWGRDLLSQMGVILCSSKEMVTEQTFRQGPLPDRGLIKKGQKIKTFEDLKPHSNVRGLQYFQ
>ERVH_OC_pro#LTR/ERVK 2116-2937  [Oryctolagus cuniculus]
MGPQAIEVRAETISAEHNGLGIIVGKEANALRGLMVITGVIQLPFDKLKVLIQSTKGIIQIKPEEPVAQILIMIGAQDVN
GPQGEKFAALSLSLADRPLWTLTIRGKSIQGLLDTGADVSIISENDWPKSWPLQPGDNTLVGLGAAMTPSRSAQVLHWQD
QEGNKGNVQPYVSALPITLWGRDILEQLGLTSTNEDQLESSTGRRIMYKKGYQERGLGSREGRRDLAQPKGDFKRQDTGF
SWGPLRYSRYHCHGWTTSQSGYHSGPLPRKSWLR
>GGERVK1_env#LTR/ERVK 5050-6800 via tfasty with RSV_env, 1 frameshift.  [Gallus]
AFLLQAWLLGKPKTPTPEKRKKTLIWVRGPPKTSQDTDPATQPLLPTPRNLVLPLLMCLCLCSLPGGGADYLLQQPGNVW
VTWANQTERLACCLSLQSATSPFRTCLIGVPFWVGNSDPPEFLGYLRAYNISNRSDPCHIYCGSPQLNDTDLANETXDXV
GKKVACVICRLNVSLPWEPQELQLLGSQGVPNDTWVNTTWLSPGCIGFARVPNQNYSLLDSISRKGPYWNSRINRSDPFT
DVFPRDRAHYYWGKEYCGYTANKTTFMLSNNSCTGIWISVNTTVTIARPDGFLRNLTCSSYNVGDSNTSGCCVGPALRGQ
GEERNIWNNDTAKALPSGIFLICGDRAWQGIPVKPVGGPCYLGHLTVLSPKVSEWLQIMNRTRMRTKRDLQQLSPNCSDE
VRLWGMTARVFASLFPPVGAAQALKETERLACWSVKQANATTLVLNEMLEDMNSIRHALLQNRAAIDFLLLAQSHGCEDV
EGFCCFNLSDHSASIHKQLQWMQGHTQKIKVQADPFGEWLEGLFGELEPWLKQMLKTLIVGLAIFLAIMLCLPCFVQLLR
ACLRNFIEEISRQQYAYQRIQEQL
>GGLTR10C_gag#LTR/ERVK 307-2001 [Gallus]
MEHVLKVLLQFCKDYFGKYAPSKKDIHAVISRLEREGEVKAPHEILDHRRWDDLTSXFAQHIMSAQEGGSELKTWGLILG
ALKAARVEGKVLAEARYLLGLGGGGETPDPVGSDGGSGAVSCRGREETEPPMTVGEMAPAEPTALSSKEDKQQESGCSLS
RPPPPYPDPSGGTLYPLSELRQCYLTQGGGGSCDLHGQDQLTAHMGRDQTKGPSNADRGHSLPSLVTPRGGSASDSVEEK
EGTGFECRGRDQMTDWNRIRSEAEGKGIVPEAFPVIVSDRGPEWVPPDPGGVARLVEFMDKRGLKSPLTLNALQTLAAPG
PLLPRDITNLMRMVLRLVQYTLWETDWMAELGGRAGAAGVGPGRSLRGTGIQRLSGKAVGVASPQGQLARLRPGELIAAT
DAMVEAFNKLVHKAEPPAPCTDITQGPNESFQSFADRLLAAAEGSDLPXPAQGPVIIDCLQQKSHDNVKALLRAGPSTLN
TPGEVIQYVLDKLKVAHLTNEGLATAIVAAVGPRQQRSLQQQGLCFRCGQYGHVRAQCPCGGGQSGPPDHRKGLLKGIRG
RVCGS
>GGERVK10_env#LTR/ERVK 5144-6796 [Gallus]
PVPYLCNKQDKSSLLQKLLVGKPKPTPEQPGDGRRDREPLIKRSTTPATPTLLILLMFMVTGGEGVHLXQQPRNVWVTWA
NLTGRTDFCLGLQSATSPFRTCLVGLPSYQLEEFRGYTVNYTVCRNETDAATQTACLIQSLNHTLPWDPQELDILGSQMI
RNGTTRTCVTFGSMCYTENDHSRVCHNFDGNFDGAGGVEAELRDLIARWSNDDPRIRPYANRSWTVVSPMNMESFSIAGA
YCGFTKNETRYYKGGSSDWCGSKGGKWSEGHRNGTTCSGCGGNCTAEWNNYAYGFTFRRNVSEVLWNNGTAKALPPGIFL
ICGDRAWQGVPANPLGGPCYLGKLTMFAPNHTGWLNISRSLHPRRRRRGASLGPECNDDVKXWGVTARIFASIFAPGVSA
AAALAQIERLACWSVKQANTTTLVLNAMLEDLNSVRHALLQNRAAIDFLLLAQGHGCEDVEGMCCFNLSDHSVSIHKQLQ
WMQEHTQKIKEESDPFGNWLDGLFGGVGSWLKQLLKALAVGLAIFVCILICLPCFVGCLQNCLATNDGKDF
>MERVK26_gag#LTR/ERVK 582-2165 [Muridae]
MANDNIYSPDSWIRVASLIKNKDTREGKTPSRDFLPILAAIXQCIGPSKIGQTDSNTAPEXPQSDEPKDQGPKNHSISDL
TALTQLIREIKSIYPPLPPYASEETLNKPSAPPAPPSPTQRQGSIKKTKELPPASPPTXPPPIQPERGISPPPSPSRKSE
IPSKLIDEAPPNSIVPYPQPSTTQQLCNXRDSLAKTNPASHATQESDTELKTQTAQAFPVNINPSRNKPLNWYPLQASDL
KELRQAVKEDGIHAPWTKSLLQSHIANLNTPQDWRDICRSALPGPMFLEWEALFRDECRQQVRQNRGRGDTPWGFNELFG
QEDFSTGAQQATQPAGYYEQVRLCATQAWDRLTPPSGSQDPASSLLSLHQKPGEPLSDFILRTKMSLERKIPNPTARDLL
LKTIVWEGMTSESRLACQGLREEHHDRWIVATRDIGTVSHQITSVAQAFVAAVKTEGICFKCGEAGHWRDECPQNSLPIA
DSNRXKKICPHCRKGFHWRRYCTAVYDKDGKPLEPLNFRRGSPQPRQ
>TguERVK9_pol#LTR/ERVK 3292-6000 [Estrildidae]
MGATAAKGAECSTPPIRWLVDTPVWENQWPLPQDKLIALRKLVQEQLDQGRLEPSNSPWNTPVFCIKKKSGKWRLLQDLR
KVNAVMEGMGTLQAGMPSPTMLPAGWPIFIVDLKDCFFTIPLHPDDRPKFAFTVPAIDNDEPAQRYQWKVLPQGMRNSPV
ICQWYVARALSGVRKQFPDARLYHYMDDILVAASTQDELLRIQPRLLDALHAHGLQVAPEKVQQQPPWKYLGVKILERTI
QHQEVQFAHSVKTLNDVQKLMGVITWLRPYLGLTDAQLSPVYDLLKGDSDLKSPRTLTPEARQVLEEVQQAVSARQVYRI
DLSVDVTVFVTTPDSHPTGIIGQWSDKWSDPLHILEWVFLPHQPQKTATTLAELIARLIIKCRQRCLQLMGADPAKIILP
ISREDFDWSFAHCVSLQCALENFSGQITYHLPSHKLLQVAKSTQISLRPKNSQEPVQGPTVFTDGSGKTGKAIVTWKDGS
EWKVLKGHQDGSAQVVELRAAVMAFERFSQEPFNLVTDSAYVADIAQRLGHSVLKEVSNPALFHLLKTLWCAIQARVHPF
YVLHVRSHTNLPGFVAEGNARADKLANPAWVAPQPDTLAQAKASHGFFHQNAHTLQKQFQLTPTEARGIVESCDDCHALA
PPLPAGVNPRGLRALELWQTDVTQIAEFGRLKYVHVTVDTFSSAMWASAHTGEKARDVIAHWRQAFAVLGIPSAVKTDNG
PAYASQQVRQFLQLWGVSHKFGIPHSPTGQAIVERAHGTLKRVLQKQKRGMQGETPHSRLEKALYTINHLTVQQNSNNPV
ILNHHLSLQAADEAHQPRAKVRVRNLVTKQWEGPYDLIASGRGYACVSTDTGVRWVPSRCVRPDLQPQRQNPTNGQHRSR
DQTESHQMDGSSSDDSVEDDGG
>SRV-2_pro#LTR/ERVK gi|1722795|sp|P51518|VPRT_SRV2 Protease  [Simian retrovirus 2]
SRKSLTTPSGKRDEGPAPGPEASLWGSQLCSSQQQQSISKLNRASPGSAGLDLCSTTHTVLTPEMGPQTLATGVYGPLPP
NTFGLILGRGSTTVKGLQIYPGVIDNDYTGEFKIMARAISSIITIPQGERIAQLVLLPLLRTAHKIQHPYRGDKNFGSSD
IFWVQPITHQKPSLVLWLDGKAFTGLIDTGADVTIIKQEDWPSHWPTTETLTNLRGIGQSNNPRQSSKYLTWKDKENNSG
LIKPFVIPNLPVNLWGRDLLSQMKIMMCSPNDIVTAQMLAQGYSPGKGLGKREDGILQPIPNSGQLDRKGFGNF
>ERV3-1_AMi-I_2p#LTR/ERVL 1505..5023[Crocodylidae]
HDGQGPSCRSVSLPRQGDRRPYARVTVEWPAGGVQTFIGLLDTGSEITIIPGDPTNLKGEKMLLGGYGNASVTGCLVTVY
ITVGPTKRRLMWVVVSPIPECIVGIDVLGEWENIWVGTPNNVRHLLVGGAKWEPLELPIPHQIVNLKQYRIPGGKEDITK
TIKDLQEAGVLVPVNSPFNSPVWPVRKPDGSWRLTVDYRELNKVVDPISAAVPDMVSMLEDISAASGEWYAVIDLXNAFF
SIPLHADHQAQFAFTWEGQQYTFTVLPQGYLNSPAYCHNMVRRDLSEISLPEGVLAKHYIDDVMLIGNTLNPVAEALECV
VKHMRERGWEINPQKIQGPAQNVKFLGVQWSGPTRDIPQKIKDKLLSLPDPTTKKEAQRLIGLFGFWRTHIPHLGILMQP
LYKVTHKAAAFEWGKEQHQAFNDVKAAVQTALPLGPYSSSDPITLEVSVYQDHASWSLWQTPIGTHQKRPLGFWTRKLPD
AAGNYTLFERQLLACYWALVDTERITEGHEIRIRPEIPIMQWVMQDSISNKIGRAQESSIIKWKWYIQERAKPGPHGVSK
LHEEITTLPAPVEGGPDLLPVATLPPPLASWAPRYDDLLPDQRKAAWFTDSSARYEGPTRVWTAAAINPVTGHQLKDTGT
GASSQWAELRALMLVVDYETERQSPAVWIYTDSWAVANGLAVWSGAWKASNWKIRGKDLWGQDLWKQLAVKSEVIEIHVG
HVDAHQPINTGNPEHEWNNHADALTRPVLECQTDXLADWIHQQSGHAGRDSAYAWAVARDLPITQSETASAAARCPRCQL
ARKPLNERLGHIPRGHGPAEKWQVDYIGPLPAINHYRYALTAIDTFSGYGIAVPVRKADASSTIRVLEAHLVHIHGIPRE
ISSDQGTHFTALLTQQWAAGLGIAWTFHVPYHPQAAGLIERWNGQLKQLLTKTLGPTLQGWPSQLPKTVATLNNRELVRG
QSPMDRMHGCGKKGVEEGALGETMLPLTIKPIQNHKPFFLPAPMTVGSVGMDLAAPEAGTLDVGQTAVVPLNWSVDLPPG
WFGQIQSRLGLAARGVVTEGGVIDPDYRGEVKVILHNQGETPFTWEKGDRIAQLLLLPAPLVSVNGQISSSSKVRHQDSS
ESTGQRVWVTQPGKDPIPAELIAEGEGNTDWVAPRGGNRYHLRPRDQLKARGL
>ERV3-2_AMi-I_3p#LTR/ERVL 4945..7419[Crocodylidae]
MKWWTVITVLFLLMPYCVSWVGRVYYPSYYPDINELAPEDLKEWPDPEEHPPETRSDDLHVVQPQYPYWKKPATPEQVKS
WSLSRRNRIVDWQGGNCQCTCGTSYYLGYIPYLKAGMANCGRGGNCCSSARLGVCCYILPEGNPIELNAPESVPPIVHSA
SVQPLEPLRLWENLPPPIPMADNTLQRWCEAHQVGGRVTGWNKVITWFVNHTYTEAWWNGTHFNTTRRRLYPQVSTTYPH
PFIPVGFLKQISAMILPGQCRFINPVQHRPHERQWELFRSLGGEAWLQAPKEGRINVICERTGCSLLSLAVPPREAPTPP
VYNSTPWWRSQVKIPTLLNASLFTARVLFRPEQWYVRATFPNCSAGARVAEGLLRWEWPTIFRSTNTVKSRKRRDAPGYL
WDGLNSAMNVWNLDKSQKNAEGVANLRQAVGLLTRGGMLEGKTLEHTDELLTDVGLETARLAQAMMDTAFKADKNQTWST
ACAQVQLSLNMHFSQVINNVKNREWPPGLEHHGMPATFKERYPYQSTWITTWEGCDKGKCSFLVQGVKDGNWTTAYLLST
GLGGGCLWDWNLHRPIWEIVTPDGPRYVAQSPLVQISNTLIGLGTLWRGWPLSPPNMTCVHELPNVSYVTIGQRVCWEGP
GRLLYENGTTWTLCNSCCLGAKSGAVALLQLSNRTIALKWPEISSETIPLNFTIPTSWVSDVDMPRLENWNEVKNKLQSL
EAKARQGTQLALLAREGGRIISLAVNVPEPCKWYDVICTVRVSPGVTSTTWLTILSIIVLCIALVATAKWCFNRCCRKSV
HAMQVKFKDPSPFPDVAHVALASQL
>ERV3-2_AMi-I_1p#LTR/ERVL 56..1585[Crocodylidae]
MEGVAWAPLVALLKEVTGMENPGWDKDRLRPAWSDPGTVPDHWARFAAAARGKPKKGCLSWLLATCLRLGAEENAQLREK
VTRLSKELEDVRDSNSVACEAARAAQSRLETLERREGKIMIARVAASLQKRAQLAQAVEPSFHKVRQCLYGEKPEVELWE
DQREEIDGGEEIDDEPGAEPPPYVPAQREEPSQAFPVVVTHSGPQGGNPRTELRSFTRAEIRDIQEQHKSKPGEPVIDWL
VRMYSEGASAISVSRAEAAQIVLRPELQLNQFAGGDENVTLFSAALQATAASYGNMEEELNPAPRAWANLEEAVRCLYQL
ALTEIIRAAVWTRTPDAEVVTAPLWRRFCRRAPTECTSALLALEPEAVNHPVRDAIRRLVQLLPILQKPGLAKPTKTAKA
MAVASAKDKPPDPPELLGKAGEGRPKTPRAKMWKDLLAAGFNKVQIDGLPTNVLRGLWAKHCSERASPKAEPSAPPAVSP
EGFSALRAELSTFSQAHAGPPAFTPPDHVA
>RSV_gag#LTR/ERVK 284-2385 [Gallus]
MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSLSDLYSPGSWDPITAALTQRAMVLGKSGELKTWGLVLGA
LKAAREEQVTSEQAKFWLGLGGGRVSPPGPECIEKPATERRIDKGEEVGETTVQRDAKMAPEETATPKTVGTSCYHCGTA
IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGHAGQAPGPALTDWARIREELASTGPPVVAMP
VVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVI
AAATRDPRHPANGQGRGERTNLDRLKGLADGMAGNPEGQAALLRPGELVAITASALQAFREVARLAEPTDPWAEITQGPS
ESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPGEIIKYVLDRQKTAPLTDRGIAAAMS
SAIQPLVMAVVNRERDGQTGSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQCRRRDGNQGQRPG
RGLSSGPWPVSQQPAVSLAMAMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEEDWPTDWPVMEAANPQ
IHGIGGGIPMRKSRDMIEVGVINRDGSLERPLLLFPAVAMVRGSILGRDCLQGLGLRLTNL
>PyERV_gag#LTR/ERVK gi|26006405|gb|AAN77283.1| Gag-Pro-Pol protein (envelope is ERV1, pol is ERVK) [Python molurus endogenous retrovirus]
MGGKFSQQQTAHLKELRELTESSSKISSNGGKTLPRLKNKELIGLLSYIWQQCPSYPEKGSLKISTWTKLGEYFHAAPRA
PVQILTSWRVVMECLMIHHKFENQMPAEPIPPPYDSVKNSPATLLPMSAGSGCLDPANGPTAPMAPSSPLTIKPQRGGHI
IRAMQTAQQSGQLSAEDLGACAMFPVTWVVPAGAAAGAPGQPVHTHIDYKQIKEIKSAVRDYGLQSRYVMGLLTSLSTAA
VEMLLADWQSLFGMILTPAQYVIWNSEYGKQAAVAINAGLPQNVTADDVLGTGTISTIAQQQNSDRAAFPIIKNCALAAL
RKVDDNQGKPLQTFSKIIQSPTEDYSSFISRLQVALERQIDNVDARGELCMKLAYENANSDCQKVLQPIANKPGITLADF
LQACRIVGTTSHKMAALASAITTTLLPPSSSSLAPQDALPVSRPAGNCFNCGKPGHFKSQCRAPGGGPHRSSSQQAVKPK
TVCPKCKKGFHWANQCRSFNQSQQNSGNLIVGHAASPTPKAELPNEDPSPHSVEMTADETVTYSLPAHVYHLFISPRLPL
TLPPEMPVLVFPNLDLTAQGVIAAPFLRSADSFSDFALAIMVNSPVTIKQGDVVATMIPLETFSDCMTIEQNVNSKRPVA
KFKLNGRSFSGLLDTGADVSVICSAEWPADWPTDPAPSVRGVGGIQTAQISCNWISVTSATSPVTAFIKPVVLPLHTNLW
GRDLMSQFQTKLILQL
>MMTV_pro#LTR/ERVK 1944-2759 95% identical to gi|9626966|ref|NP_056881.1| Pr110 gagpro [Mouse mammary tumor virus]
KKLVKGQSPSPTQKGDKVKGSGLNPEAPPFTIHDLPRGTPGSAGLDLSSQKDLILSLEDGVSLVPTLVKGTLPKGTTGLI
IGRSSNYKKRLEVLPGVIDSDFQGKIKVMVKAAKNAVIIHKGEKIAQLLLLPYLKLPNPIIKEERGSEGFGSTSHVHWVQ
EISDSRPMLHISLNGRRFLGLLDTGADKTCIAGRDWPANWPIHQTKSSLQGLGMACGVARSSQPLRWQHEDKSGIIHPFV
IPTLPFTLWGRDIIKEIKVRLMTDSPDDSQDL
>RNERVK3_gag#LTR/ERVK 156-2294 (renamed to ERVB4_5_RN, but "new" consensus is poorer) [Rattus]
MGKVLSKEACFIREIKRLLRERGIRVKKKDLIKFFCFIDEKCPWLILSGPDIHPHTWNKVGQEINRLLKAGDPVSAAFFS
YWGIIRDIIIDAEEGGESARLLAVAEDFLQASRPASPNNEKENGEPHSPCPSIVIDMPGGEGNPSSKALCSLEDPKMSKN
SKTIYPSLKEFSGKNKCSESGLDPASEAELEEEAARYEKERYGPEPQETQIFFTRRSGPVCLPPYLPPISSAPPAPLPVA
VVEELTQTKTALQAQITGLKQILHLQQELGDLTLEIQDLQETMTKGQYAQKGPAKASRKPQPKLTFPVMTRARARQARDE
SELNSTRTLNRSARDEREPDSTNRNRNEEQESEEENDYEEGPSDSEEESPDQDEGGTSCPVYKKLKLKHIKELHSAVKNY
GMNAPFTLAILEGLSGSGYLTPSEWTKVVQSVLTRGQYLTWKSEFIDKAESLAARNRNNPLSKSASWTADKLCGRGSFAS
EEKQLGLSPGVLAQTAQAALSAWRAVPATGALTTPLTKIIQGAQEPYAQFVGRLQEAAERILGQNESEGLLVRQLALENA
NSACRAALRGKTKDLDIPGMIKLCKDVDSFSHQVSKSISLAIGAVFQRAGDSGHPRGRTCFKCGQPGHFARECNIPKPSQ
SPSPAGWPTAPRVCPRCRKGRHWARECQSKTDISGQTLPAVQGNERGAPQWGPYPRVTTRPQVQHQAPATPTY
>RNIAP1b_pro#LTR/ERVK 2095-2994 [Rattus]
DVKKRIVGPPVPGPSKIWEPLSESHDPDRGDSPRGDTKLDLCAASDFFLMPQMGIQPIPAQTVGPLPPGTIGLVLGRGSL
ALQGLIVHPGLVEAQHSLDIQILCSSPDGVFSISEGDRIAQLLLLPCSQTTIQDTKGPMGSTGNDLAYLVVHLNNRPKLS
LEINGKKFEGILDTGADKSIISSKWWPQSWPTIRSSHSLQGLGYQSCPKISSATLTWTTVDGRQGQFVPYVLPLPVNLWG
RDVMQTMGLTLSNEYPPQVAHMMSRMGYKEGKGLGRLEQGCLTPIEPVANPHKQGLGFS
>RNERVK8_pro#LTR/ERVK 2174-2986 [Rattus]
KGSAGLDLHSTTRLVLTPQMGXQPVDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPGVIDPDYLGTVKVLVASPQGITAI
SPGDRIAQLLLLPSLHRRFPAENRIRGDRGLGSTGSRFAFISLELGDRPMLXLTVEGRSFLGLLDTGADRSIISVHDWPP
RWPTQTSSQALRGLGYEMAPLXSSKELTWKDXEGRSGKITPYIIDIPVTLWGRDVLINLDMRLTNEYSPQAKDMMIKMGY
MPRKGLGKNLQGRVDPVLLXSKRDRTGLGFS
>SFV1-12_Crp_env#LTR/ERV4 5976-7572 via tfasty with SFV1-10_AMi_env, 1 frameshift. [Crocodylidae]
MLYLSLPTLLVILFLVTIPVLTPFSSPNTVLQLLSLWANATGEEEKGQGLTACLKIPMSVQDPVLTLYPEPFNLSDWFSQ
ISLSPKTSIDVFLSETFGSINYSWPQNFTLASLSSEPTETXCFFNGTPYACSAIPWGIHPNGNDWSRPDQSLTWNPHLVT
PPWYLDLTPHGQATVSVVTLSPLIQPTPLVKWNNSLAVNLTQPGPFGNDSWFGFYYPTLRAILLNAACHGVTLPIRQPGP
PERTRHAFPFPGRCSELSTPAPIGLAWACSNGKVYTALPATLSAVQCFLSTLLFCPPLKASTVYPPSLHIKHRQTRSRAP
VWSSLTHGEKVTQALSWATEGLFVWGIGMTKTRIALAQLAEEVELLANRTADSLSLFNQQLQATSQMTIQNRLALDALLL
QHGGLCQYLNLSNDLCCIAIPNVSIPLNQQVDSIRKIATRVNGIAGVGNSLLSQVFNALGFNISSWLSNLLSALLLLFIP
IIIFLCVCSCIVKYIQNRINSVSAFIYTKLPNELNEEKDPFTINPFLNETTT
>SFV1-11_Crp_pol#LTR/ERV4 2203-5743 via tfasty with SFV1-8_Gav_pol, 2 frameshifts and 1 stopcodon. SFV1-4_Crp_pol near-identical.[Crocodylidae]
VIAIGGGPAIDGSTDPRRRQTDSKIEVTQNEPKRNESKLNSNEETINELKPSELKCDEAKLSGQTELKRRNPKRNEPKRN
ESTRSETSEENQMMKxKQPKQSGEHKSELEETVITEPKHTKTKQSLKRNETTRSESKQNQEDPSMSNMKLNVTETVLTEG
VQEEVGVRKTNYSEPDATVAENNPKMLNDDQRPYARIEIQNPDDQTDITYAKFLLDTGAQVNVIKSSIPHVKTKKIMMVQ
GLNAVTATCRVKFLVKGCEKRLDAVLGNVNILGVPGIRALNLKQKVLEALPISTIPREERHRPTLKIMSTWRYTPIPTKQ
QLQDPLNNLLEGLEKEGSINPIQASTRLSPGWGIPKPGRPNEVRLVVDYREANRRCQTLAQATPCTLVQMIQEMAEYQSE
TWKGTTIDLKDMFFSIPINDEDGILNMCVKGRIFRWNVCPQGYCNAPALATGAMNNSIENFKKSNLESRAVQIWSYIDDI
AVMGRGETVVKKVTEDLIEHLSKDGWKINKKKSHLEPSEKISFLGTVFCRTKRHGATHNDTEVNIWENKVPVTRADFQSL
LGWLNWFRNYIGPEHLPILARIQRQIREKTRKKTPWSEKDAKNLKELLDAVKNTSLSAIDVTSVLIITVGFTDEHLFATV
KNEKGELVYLIHRTMKTNQHRYGTIAKTLLAAQLVEFLSIGKGKLRATGATLLPKLMHDRPDPTFQGEPSTWSSMVLNHV
YHWHDWRHEDLPPIPASERSSRIILYGTTEPAWMASDGTTRGEGKYGFYCEPCSEAVICDGDISAQKNELLGFKKVVKHC
LANHNGTLPIPVIAVDSMYIYKIITGTASPNEHTEIWDKIYHLLSEFTTLPLIKHTRSHCTDTDPVHEYIDRLLHESSNI
GRVCTVQDAESEVQIDPYLKWLHENWGHPSSKKCYQRWNHGSKRAGKHREWKKIVQACEACAKEKCNQTKNTKGVFDKEK
FEPGKTWQIDFLGPLPGAAIPNKGLIVVDLGTRQVAVVPLRKTHATAVITALTGIFAMWQTPQTIQSDGGPPFTSTAIEK
FAALNNIRWHRHIPYHPQSNGVVERAVGLFKEALRLKGNGSYKGWTRICDEVLVNLNEGKELWTNRKPAPVEPWEKKFKE
NELVWITFPDPKNKHPKILKGIVQGAEEYPNTYLIELEDSGKKVLAHHNWLTRRAVTNNTD
>SFV1-12D_AMi_gag#LTR/ERV4 33-1886[Crocodylidae]
MELELVRNCPWRSERRHMTNAVELGAHIAYHQAGGTGERLVSGYLSLKGEEGASKEWEAHLHPGAFGCVMGSERVLFRPR
EEVSTASLTGVKPAGAVDPTLSQEYARCMRLVREGGEPTPIDRFSPPALASGLRGRELLSELRKNLEAEGRATTERAGPK
CDKGRMLNVMFRTITTLLRENANLEAQLLTAVQAAKEAAVKESPESTPFQDGAEEGVSRPENPEKKGGASEEPAGIRPAA
PPTEVTSLPAAPPPYHGEGASSGGLHPPLPPDTATASTAAHPVAIVNRVINAQDAVRTTTYRARTWTELQELCKESKIKP
EETLAVWLGRLVVGFGSDLLDLEEASFLTRQASWSGGHATDIDIVTCNVHWPIPLPALVAGQVGHKSHAWHDGRPSKASA
EQILLAIIGISYCSWNSRAHALGLTPPQQRGPWPHRHLRNPGIVPVTLNGVEACVEVYGGKNAIILRILLNPLAGQPAGN
LLRQLPRLQALMKSDTGTSSDLERRPAACPIEAQSARHRESDLQRTLQPLPQRTPEERIMFGFLLHHSRLTKRQLRILGD
AGQWQLAYELGFQYPGEPDDESTSSHLTERGQKTTRRLKFMPNELAWIVIPFPRRSHP
>SFV1-14_Gav_gag#LTR/ERV4 24-2044 via tfasty with SFV1-11_Crp_gag, 1 frameshift. [Crocodylidae]
GGEFESELIQSCPWCSGVRLTSDPDDLWNHVAFHQAANQAAAAIHGFLSISGTSGKERAVRLSLGALGCVLSDSQAVYHP
REENGTASQARVKSLATASLSPAQEFARCIKYVKEGGEETPPDRFQCPSLTAGSRGHELLTQLREGLERDGRKAKWTGLK
WKKGRIINVLFREYVSLLREFSDQGMQLETAARAAAKNLAERPLQDGAGGSESAPTPAPTSLPAPPTKSPPPAATSPVAP
PIWSPPPATAPPVVNTSPPPYVGQRHLEDVRENGNLESETTTMKATKSESMQTTVTNTMKTSATNTKALMPISETISERN
NMNVTISKLEQPQPNDLVTAYPIAVQKLVTDPQGGTKITVTTRSRTRSEMSELKKDTAIRSDETPIAWLGRLVAEAGNET
VNQDEALQLIRSSAWSWAKVVDPVPVLANYYWPIPVPALAVEALQRKVHAWHEGSAGRASATSLVYAVIGASYALWNPAH
QALNLTPVQVQGAWPHRFAASPGDVPCLAEAIEAATEIYGGNQSITARLLLSSSINGPVIHTLGQLDQLQGAMKVKPQKS
TYPVFDGEHGSAKAYPIENRYQKPPSKTYERQPIRNFPANRNQPRYSPPQERNRPSQSKYSPPQRPAVERAIFSFLLVKS
GLSKEKLRPLGNEGQRDLAKALGFKEYSPKPKNE
>SFV1-14_AMi_gag#LTR/ERV4 33-1052 Large internal deletions, perhaps non-functional. SFV1-13_AMi_gag near-identical[Crocodylidae]
MEWELIKNCPWCSGGRRIDNADELWAHIAYHQASGAETGCVSGYFSLRGEEGVGKEWGGSEWDKEKMINVPLCAVSLLLR
ENTNLKTQLATVSKAAAEMAACQNPPLPPKNGTEKNMSCPEDLKKKGGATKEQAGLHPASPPPEMTSLPTAPPPYHREGA
TSENPILPPDTITTTAAAHPITITKQITNPEGATTTTTLDVIKAYMEIYGEEDTITLRLLLNLLVTQPAKNLLSQLPRLQ
ALIKSTTANSAVALSYLTAYPVEYQGPRHSQFNSRKKSRLPPQRTPEERAMFGFLLNHFTLTKQRLHVLGDAGQRQLTHI
LGYQPRPIPPTGPGPGGTHA
>SFV1-11_Crp_env#LTR/ERV4 5894-7495 via tfasty with SFV1-19_Gav_env, 1 stopcodon. SFV1-4_Crp_env near-identical.[Crocodylidae]
MATKPKDFGLIIVHCIYFGFVIVKLSAEPVTKFDHSSNSVLYLLSLWANATGDETGQGLTACLKIPMSVEDSVLTPYPVP
FDVNEWFTKVSQGEETTINISVPLEGGGHVATSYSWPRNFSVKDIAQVTNPPKLDCFEGEAQCACSAIPWGIHPQGNEWS
RPDMSLRWDPQVISPPWYIDLSPRGGKKGPSEFILTPLIEAIPLASWDESQAVDLTKSGSHGKNSAFGFYHPTLxAILLH
AACHSLEQPIRQSGPPERSALSYPIPGRCDELSTPAPFGLAWACSDGRIYTTLPATLTGIKCFLSSILFCPPLQASTAHP
PSPTITRRQARSAMLIWSSLTHGEKTAQGLSWAIEGLFLWGYAIAKARIALAELSERVELLANHTAAGFTLINEQVQATS
RMTMQNRLALDALLIQQGGLCQYLPSIPNVSVPLQHQINKIRKIADEVNTISGIGQGWLSRIFKWLGWNPSSWLMNLLTP
VLSFLFIFVIIVCSISCIFKILTRRVANLSAYVYTTVPTYEKFGNNGSARGEEV
>WDSV_pol#LTR/ERV1 gi|9629908|ref|NP_045937.1| Pr gag-pro-pol (gag and pol split) [Walleye dermal sarcoma virus]
SGTKTTQDVITTKNAEIMVTVNHTKIPMLVDTGACLTAIGGAATVVPDLKLTNTEIIAVGISAEPVPHVLAKPTKIQIEN
TNIDISPWYNPDQTFHILGRDTLSKMRAIVSFEKNGEMTVLLPPTYHKQLSCQTKNTLNIDEYLLQFPDQLWASLPTDIG
RMLVPPITIKIKDNASLPSIRQYPLPKDKTEGLRPLISSLENQGILIKCHSPCNTPIFPIKKAGRDEYRMIHDLRAINNI
VAPLTAVVASPTTVLSNLAPSLHWFTVIDLSNAFFSVPIHKDSQYLFAFTFEGHQYTWTVLPQGFIHSPTLFSQALYQSL
HKIKFKISSEICIYMDDVLIASKDRDTNLKDTAVMLQHLASEGHKVSKKKLQLCQQEVVYLGQLLTPEGRKILPDRKVTV
SQFQQPTTIRQIRAFLGLVGYCRHWIPEFSIHSKFLEKQLKKDTAEPFQLDDQQVEAFNKLKHAITTAPVLVVPDPAKPF
QLYTSHSEHASIAVLTQKHAGRTRPIAFLSSKFDAIESGLPPCLKACASIHRSLTQADSFILGAPLIIYTTHAICTLLQR
DRSQLVTASRFSKWEADLLRPELTFVACSAVSPAHLYMQSCENNIPPHDCVLLTHTISRPRPDLSDLPIPDPDMTLFSDG
SYTTGRGGAAVVMHRPVTDDFIIIHQQPGGASAQTAELLALAAACHLATDKTVNIYTDSRYAYGVVHDFGHLWMHRGFVT
SAGTPIKNHKEIEYLLKQIMKPKQVSVIKIEAHTKGVSMEVRGNAAADEAAKNAVFLVQRVLKKGDALASTDLVMEYSET
DEKFTAGAELHDGVFMRGDLIVPPLEMLHAILLAIHGVSHTHKGGIMSYFSKFWTHPKASQTIDLILGHCQICLKHNPKY
KSRLQGHRPLPSRPFAHLQIDFVQMCVKKPMYALVIIDVFSKWPEIIPCNKEDAKTVCDILMKDIIPRWGLPDQIDSDQG
THFTAKISQELTHSIGVAWKLHCPGHPRSSGIVERTNRTLKSKIIKAQEQLQLSKWTEVLPYVLLEMRATPKKHGLSPHE
IVMGRPMKTTYLSDMSPLWATDTLVTYMNKLTRQLSAYHQQVVDQWPSTSLPPGPEPGSWCMLRNPKKSSNWEGPFLILL
STPTAVKVEGRPTWIHLDHCKLLRSSLSSSLGGPVNQLLS
>WDSV_gp6#LTR/ERV1 gi|9629907|ref|NP_045941.1| hypothetical protein [Walleye dermal sarcoma virus]
MFSDSDSSDEELSRIITDIDESPQDIQQSLHLRAGVSPEARVPPGGLTQEEWTIDYFSTYHTPLLNPGIPHELTQRCTDY
TASILRRASAKMIQWDYVFYLLPRVWIMFPFIAREGLSHLTHLLTLTTSVLSATSLVFGWDLTVIELCNEMNIQGVYLPE
VIEWLAQFSFLFTHVTLIVVSDGMMDLLLMFPMDIEEQPLAINIALHALQTSYTIMTPILFASPLLRIISCVLYACGHCP
SARMLYAYTIMNRYTGESIAEMHTGFRCFRDQMIAYDMEFTNFLRDLTEEETPVLEITEPEPSPTE
>SFV1-3_AMi_env#LTR/ERV4 5026-6705 (SFV1-9_AMi_env very similar and with too many errors)[Crocodylidae]
MFLLCLLVLLCRASPLQERGVNPPPDDDSPPPSTNTVLLMLSAWAETIGTATNHPSLTACLRLPLSVSDPVLTPYLEPFD
VLAWFQDRSKDNPPSITVHFDRGSNKWVSRNTTYTWPQGITFAHLNTTTRNCTSTSTDHLASGTVTGDTISIFCSRIPWG
INPRGMRWSRSDNSLAWNPQTLTPPWYLELPPCIHPCVNCSGTRAICPRRPGPIPQVTLSSLNRPPPLVTWNASLAVNVS
DNETWHSFFYPILRAALISSACHGVKLITDKPPRAWEAYSFSGDCVQLSTPAPLGLLWACSDGRLYTALPATLTGVQCFL
THVALCPPLYANTYLPHSLFIRRHRITREPYQHQDTWSQLPWHKRLWETVKWGAESLIPGYGGIKVRLALVQLIEQVEEL
TNTTRTAIQLLNLQLQATSQMTLQNRLALDAILLQQGGLCQYLNLSRDHCCIAIPNVSLPLSLQVDKMKKIAENVNRLSG
IGQGWLSDLFRWFGWDTSSWFLNLLTPLITLLLPIAVFVCFGCWILQYLKTKLTTLSAFVYTRLPNTNDDEQNGPYMYMM
>SFV1-10_AMi_pol#LTR/ERV4 1784-4831[Crocodylidae]
VAAVGHAGGLHKPDPADPRPYVELLVCNPHDPSDRRQVSFLLDTGAQVNVVTNTTPHIKTAKTIQVQGLNAIAATPRIKF
QIQGHVLNGVLGGINILGIPGIKALNLKEQVLQALPIAIPEPDWHRPTLRNTSTWRYRPIPTKGPLKGSLTDLLRRLEQQ
GCIKPVTASTYLSPGWGVAKPGKPDEARLVVDYRETNKRCQVLQQPNPSTLPQCMSEMAQFQRDEWVGVTLDLKNMFFSI
PITDPEGVLNMCIEGTMYKWTVCPQGYCNAPSLATGAMNNTLKNFRATHALPPEEELKIWSYVDDIAIMGHDSPTVTRIA
NQLVAHLQDEGWTVNEEKSRLHPIADITFLGTRFVGPTRHGISHDGPDIDLLKEPLPVTKRHFQQLLGHLNWYRHYVNPS
HLTLLAKLQRQIRDKSRKSTPWTEGDQRNLHRLLAAVKGTQLHAINLGEPLIVTLGFTANHVWAVAHNSRNDLVYTAHKT
LQAAQHRYGAVGKILLAGQLVEPLARGHGTLRAPAATLLPLLDAEKVDPYFQGEPKTWNTLVLTHHYNWCCWKFEDIPPD
PSPGDGEKPPTLYGTSAPAWMASDGTSRHGGGYGYYCKACHDAEILWAHPDDNSAQKCELLGFLKVLQHCLMHHNDTLPV
PIIAIDSQYVYKILTGTAXPTENLNDWEDIWETLTKFTRLPLVKHTKSHRPDTDPVHAAIDKLLEDPLRTDVVLPITTTP
DPEVSPFLAWLHENWGHPGPRASHRRWRQAATEPTSYGVRRDWEKVAQACEICAKEKCHRTKHQAGAFNPSQFQAGKVWQ
IDLLGPLPGSKPPNKGLVIVDLGTRQLQVIPLRKSNATAVVSALTAAFAAWQPPHEIQSDGGPPFNSNALDKFARLHNVA
WHLHLPYHPQSNGVVERHIGLYKEQLRLRGGGTYKNWTKHNHDVLISLNTAKPLWDEANPKKPLPWEPKFQPDELVWVSI
PHPRQSRPQVYKGTVHRSEPYPNTYSVLLEERPDRSPIIVHHNWLTRRSAGHPVSL
>SFV1-5_Gav_pol#LTR/ERV4 1986-5030 via tfasty with SFV1-3_Crp_pol, 1 stopcodon. [Crocodylidae]
VVAVGRSDGAIQEAATDDPRPYADLTLIDPTNPLKQVCVSFLLDTGAQVSVITADVPHQVTKKVIMVQGLNAVKPTPVIG
FLVKGHRKVLTGVLGGISLLGVPAIRALKLKEQVLQALPLAVSPDNRHRPPLRNGTAWRYRPIPTKASLQASLQTLLSRL
EQEGRITPVSESIYLSAGWGIAKPGRPDEARLVVDYRMANKHCASIIQPNISDLPQQLCSIAEYQSQPWVGVTIDMKDMF
FSIPIDDHLGVLNMCVEGKMYRWNVCPQGYCNSPALATEAMNKCLSEFKQNQQFPSDVLLCSYVDDIAILGRDNSTVASL
VQxLIQHLMAAGWTINQQKSCLDPSDDITFLGTRFKGPWRQSHKPPSELILPLTDRSSNKTPSQKDLQQMMGRINWLRHY
VQPKGLAVLAKLQKRLRQFRYRSYSEPWTPKDDQAVQGLITQCENTKLHAVNLNNDLTVAVGYTDVHIWATVHDQDHLVL
AAHRTLQDAQHRYGTVGKVLLASQLAKPVSKGHGTILGPGMTLLTQIDSDRVNPEFGGEPKTWAALVLDHQYHWSASWEH
RDTPAPCEVRDRPILYGTTAPAWMASDGTTRHGGLCGFYCHACREHEILTAYKSAQLNELVAFCNVIEHCLEWHNGCQPV
PVIAVDSQFIYKIVTGNGDPELCVRTWEKIFDMITALDPPPLIKHTRSHCPDTDPVHAEIDRLLQEGKQPQVSVGEVAES
SEKDPFLHWLHEHWGHPGVSASHSRWCKDTTQPRSEGTHKDWTRIVQACEQCAKEKKHPTAVERETFTKEHFEPGKVWQV
DLLGPLPGARRHPKGLVAVDLGTRQVQVIPLQKSTGPSVVTALKLLIARWQAPEIIHSDGGPPFTSKLIGDFAAAFNIQW
HHHIPYHPQSNSVVERTIGLIKEKIRLLNKGSYTGWDTILPDVLISLNADKPLWEHRTPIPPKPWTPKFISGELVWVTTP
NPEDKHPTPTKGQVVRPGQYPNMYWVIKDVDGSTEPPHLLAHHNWLSRRAEQKVT
>SFV1-21_Gav_gag#LTR/ERV4 351-2039[Crocodylidae]
MKEGGEETPSDRFQCPSLTAGSRGHELLTQLREGLERDGKKAKWTGIRWKKGRIINVLFRHYVILLREFMELGVKLETAA
ERPLQDGAIRPESAPNPTLTSPPAPPTPSPPYVATSPVAPPTWGPPPATAPPIVITSLPPYVGQRHPEDVQKNCNHESNQ
PTSNTVTRSARTEAARQTSNSYENATGTSETNDNDEITATSQSTDTIEANAGIRNKEATNETKSLSNAIIINQTSNESEY
VTAYPTAVQKFMTGPQGQMQTTITTRSRNRLEMSELRKDTQIRSDETPITWLGRLVAEAGSETVNQEEALQLVRNSGWSR
AKVVDPVPVLANQYWPIPIPALAVEALQRKVHAWHEGSADRANAASLVYAIIGASYAHWNPAYQPLNLTPAQVQGAWPHR
YATTPRDVPCLAEAIDAATEIYGGDQGITAKLLLNVSINGPVIHTLGRLDQLQGAMKKTRVNLASGEEHETVRAYPVENR
SRKPFTKPPEKSFMRDPPRSNRISSTSKYSPPQRTPMERALFSFLVNKSGLTKEKLRLLGDDGQRALAETLGFQRYSPKP
KNE
>ERVB4_2_MM_gag#LTR/ERVK 176-2254 (ERVB4_3_MM very close with many errors) [Mus musculus]
MGKVLSKEAVFIQEMKGSLKERGIRVKKKDLIKFFCFVDERCPWLVLNGSEIHPLTWNKVGKEINSLIKQEDVPEPFFSY
WGIIRDLLEQAEKGGEGASLLALTEDFLENSRSPSRKSEAEPSANYQSRPSSIIDAPASKDSLPSPLSPQITLDSRKRAT
AQPSIRPKRIYPVLYKELSDKPLDPASEAELDEEAFKYEQDHYGPGPDAYLTMEPFNYHPPPYLPLIPPTAHPISLASPS
VRQLLQTKKELQTQITNLKDVLGLQKELQDLSLETQSLQRALMGNLQGPISKNPKTSRRSPSQKQGNEKLTFPVLTRARA
RQAAPGHEDPPTGVSNKDQGEPESDEEEDQANSDSDEGGMSPDEGLDTNSQPVYKRLKLRHIKDLHSAVKNYGVNAPFTV
SILEGLAGEGYLIPNEWNKVVQSVLTRSQYLTWKSEFVDRGENLAANNRKKLTCKTALWTADKICGKGNFAADKKQLGLS
PGVLAQTAQAALGAWRAVPATGALIMPLTKIIQGPQESYAQFVARLQEAAERILGPEESEGLLVRQLALENANSACRAAL
RGKTKSLDINGMIKLCNEVDVFSQQVSKSINLAIGAGLQLSKGQKTCYRCHQLGHFARECPTQRQSTLVSTMPVTQQKLP
PSLCHKCKKGCHWARDCRSKTDINGHPLSAVQGNGQRAPLRGPSPLITTADP
>ERV45_MD_pro#LTR/ERVK 1829-2710 [Didelphinae]
ASSKHATGKLQTGPGPGPSKQWGNNCGAQSEKPIPSPTIRSLHRATPGSAGLDLCAASGLILTPDSPPALIPTGVKGPLP
EGTMGLIIGRSSVSLRGIVVTPGVIDSDFTGELQIIVQPPXKTVTIMKGQRIAQLLILPYVQTXNPILKTSRGQGGFGSS
NWAFWVQEIKNSRPMKILNISGKNIEGLLDTGADTSCIAGKHWPPTWPTKISPSNLIGIGKITNAAQSSQILTWSDGNLS
GQFCPHVVPSLPVTIWGRDILSQMKVSLVTPEEDAQTPPNDEPLDFPEGPSPR
>ERVB4_6_RN_gag#LTR/ERVK 345-1436 via tfasty with ERVB4_1_MM_gag, 2 frameshifts and 1 stopcodon. Misses N-terminal half [Rattus norvegicus]
PLKELNNAVRTYDPNAPFTQFMLEALSGGRYLTPGEWFRATQAVLSHGQFLSWKADFFDHCQTRAGRNKKDPWAPEAAWT
FDKLTGQGKSVSEGCQLRLPMGLLVQVKEATLGAWKDVPSKRNLTTPLTxVIQGPQEPFSEFVARLQEVAERVLGPRKED
NNLLKQIVYENANSACKSVLKGQTKNKALPDLVRLCTNVDMFSHKVSQSINLAIGAAPQVAKGPTSHKNFIKCGQPGHFA
RQCPLIQRTD
>ERVB5_4_RN_pol#LTR/ERVK 3066-5681 [Rattus]
MAVDAPVPHADKITWKSNDAVWVDQWPLTSEKLATAVALVQEQLAAGRLEPTTSPWNTPIFVIKKKSGRWRLLQDLREIN
KTMLAMGALQPGLPTPVAIPAGYYKIVIDLKDFFTIPLHPEDRERFAFSLPVTNFKGPMPRFHWKVLPQGMANSPTLCQR
FVAQVIDPFRVLWPSVYIIHYMDDILLAGPDGSELLRCCQQLSRKLTAKGLQIAPDKIQLKDPYFYLGFELHHQKIITQK
VQLKTSHLKTLNDFQKLLGDINWLRPYLKLTTGELKPLFDILKGDSNPSSHRSLTPAAANALQIVEGAIQSQGVTFISYD
KPLLFIVCATSHTPTGVFWQKDPLLWTHLPASPTKVLIPYTSLVAKLILLGREQSRQFFGKDPDKLILPYSKDQIHWLMQ
TTDEWPVVCSSFSGIIDNHYPADKLLQFAKIHPFIFPRITSPRPLTEACLVFTDGSSTGNAAYVIDGQTTTIQSPFSSAQ
LVELFAVIKVFQIMINRPFNLYTDSAYIAQSVPLLEMVPYIKPSTNAVPLFSQLQKLITSRCHPFYIGHLRAHSDLPGPL
SEGNACADAATRLAFPVSIDPIVQAQESHSLHHLNARTLRQXFRITREQARQIVKQCPACVTLLPNPHLGVNPRGLIPNE
IWQMDVTHVPEFGHLKYLHVVIDTFSGFIFASLHTGEASKNVIAHVLNCLSVMGKPKVIKTDNGPGYTGKNFQEFCHRLQ
IKHVTGIPYNPQGQGIVERAHQTLKNTLLKLKRGDLYPTKGSXKNILHHALFVLNFLNLDTHGRSAADRLRHPETNKXYA
TAMRKDPLTYKWNGPDPVLIWGRGAVCLFDTEEGAAXWLPERLVKHXDVPQKDSSXPEILESDEIQGRESP
>ERVB4_6_RN_pro#LTR/ERVK 1121-2203 [Rattus norvegicus]
MKDFLDKILDLHLPGPLTATKCPHCKRGKHWANLCHSKTDISGNPSNPFREMGGGALLGGPREPFIQSISMASQIPAPGP
NTPLPSSELPQRATGVDLCAATDTVLRPEDGTQIVPTGMFGPLPPNIFFLIMGQASSALQGVIIHPTVVYNDYTREMRVL
ATATSGPLTLKEGQRVAQAVPLPLDRHYPSLQDRRGATQPCSSDAFWVQTITHERPSLKLKLDNRWFLGIVDTGADPTVI
SKDQWPSSWPLQPSLTHLQGISQSKNTLQSSKYLKWDDSEGHSGFIRSFVVEALPVNLWGRDLLTQLGLVMCSPNETVTR
QVLQQGFHPGKGFGKKEQGIRASIIPSPKNDGTGLGYQNFS
>ERV45_MD_pol#LTR/ERVK 2674-5412 [Didelphinae]
TPGFSGGAIAEITADPITWKSDKPIWIEQWPLTDEKLHALQELVQEQLRLGHIEPSNSPWNTPVFVIKKKSGKWRLLQDL
RAINNIMEAMGSLQPGLPSPVAIPKGYEIIAIDLQDCFFTIPLSPQDRARFAFSVPSVNLKRPYQXFHWKSLPQGSKTSP
TLCQKFVDLALNPIRIQFPDAYVIHYMDDILLAHPDXAKLHEIMSSTVQALAENGLKIAPDKIQTELPIRYLGRTIGTEN
LISHQNLQLRVDHLNTLNDFQKLLGDINWIRPFLKITTADLKPLFEILRGDPSPTSPRTLTEGGSKALTLVNRAINNQKL
SRLDYSQPWSLIILPTEYNPTGCLWQDLPLEWLHLPNSTRKVISSYVMLITELIVEGRRRSRELFGEDPPFIITPLNAMR
VDDLYCHSTDWQIALANYSGEILYRLPQSPLLQFLKTQAVIFPSRFSPDPLPPPAAMVFTDGSSNGKAATVINNEPFIQE
TRECSAQRTEILAVIYAFKKLVNAPFNLFSDSQYVVKLFPHIETASLPSSKSSVLSLLLELQKLIQARDTPFHIGYVRAL
SSLPGPIHEGNQLADSXTRAFLTAVQNAEESHEIHHQNGSSLRQQRGVTREAARTIVGNCPHCPSHSHPPAHGVNPRGLR
PDHLWQTDVTHVPSFGRLSYVRVSMDTFSHVIVATAHTGEAFKDVSQRLFAGFSYXGMPKALKTDNGPXHTSKAFAKLCA
TFQISHSTGVPHNPQGPAIIERARQTLKAQIKKLTGWRFLPLFPHHILTHAMFVLNHLNLNSDDHSPMERHRNPDNAFRK
PLVRWKDASSGVWKGPDPLLTSGRGFACIFPQDSDSPIWIPDCLIRPYVQAPAEATVPPPWHPSPVALHPPLQLRRLLQI
LCTIWWNRSDVSLSVTPPRPRSAGVGCRPQPT
>SFV1-23_Gav_env#LTR/ERV4 6020-7616 via tfasty with SFV1-21_Gav_env, 2 frameshifts and 1 stopcodon. [Crocodylidae]
MAMKPKDCTVTFMVLCIYCTYLVRMSELDHVQNTVLQLLSLWANATGEEEKGQGLTACLKLPMSVEDQVLTIYLVPFDIE
RWFAEVANSKETSTYVSMGKGSASLKFSWPRNFTLADLSDTTYSPREGCFAGAVPYVCLAIPWGIHPQGNTWSRPDVSLK
WDPRSIVPPWHLDLNPHGKVISPVVTLSPLVKPTPLVKWNNSRAVNLTQPGPSGNNSWFGFYYPILRAVLLNAACHGVAP
PITQPGPPERARHAFPFPGLCSEVSTPAPFGLAWACSDGRLYTSLPATLSGVQCFLSSVVFCPPLKASTAHPPSPSILHR
HVRSTAPVWSSLTRGEKIAQGLAWSFEGLFLWGLAIGKARIALAKLSEQVELLANHTATGFELIDQQLQETSKMSIQKRL
ALDALLIQQGGLCQFLNLSHDMCCIGNPNVSIPLQNQVTEIRKIAEEVNAVAGIGQGWLSRIFQGLGWNVSSWLTNLVTP
xVLIVLVLIVITSVASCISRILTRKVSALSVMVYAKLPTYETVDEKIEIEDDC
>SFV1-21_Gav_pol#LTR/ERV4 2021-5383 (the third coding region of SFV1-21_Gav (5469-6323) encodes a stem cell factor (SCF) protein not specific to transposable elements)[Crocodylidae]
SQAKKRVTAVGVSPATGGYEDPDKRNDERNTDPKLKQKTVTFTINGEQETVGGEKQYDLHGSTVHTITTITKNDGKWKIV
RFSDTVQDKDTIGETVRAKDTIDGTIHGRNGEVMTTSFTKLLDDDQRPYATISIQNPDDPLDETIARFLLDTGAQVNVIK
PSIPHKRTSKIMMVQGLNSASATSRVKIFVKNHKKPLEAVLGHINILGIPGIRTLHLKDQVLEALPINILPEREWHRPSL
QVTTVWRYTPIPTKQQFHDQLDALLKSLQQDGSITPVHASTRLSPGWGIPKPGKPNEVRLVVDYREANKRCTILTQPAPY
TLVQSLNEMAIYQSQDWVGTTLDLKNMFFSIPIDDREGVLNMCVRGKMFRWNVCPQGYCNAPALATGAMNESLDRFYHKH
PEARQLKLWSYIDDLAIMGRMEELVQNITTKLVLHLKGDGWTINKDKSQLTPTNQINFLGTTFTGPRRYGVSHEAINIDL
PGKYPTKKAEFQSILGKLNWYRHYITPQHLPVLARIQRQLREKARQKTPWSHKDAKALEELIISVQNTTLHAINFETPLT
ITVGFTTEHLFVTVKNPEGNLVYVAHKTLQMTQYRYGVIGKTLLAAQLAEPLAIGRGKLRATGATLLPRLAYDRPDPCFQ
GELSTWSALVLNHLYQWHAWKHEDLSPPQTIAETQNIVLYGTTQPVWMASDGSTRENGKYGFYCHPCSEHKIHPGCESAQ
KNELLGFRDVIYHCLKHHNGTRPVPIIAIDSQYIYKIVTGTASPTEHLPLWDEIYALLSEFSVLPLIKHTRSHRVDTDPV
HRKIDELLEYPTEVNVFTTQITDETICANPYFSWLHEHWGHPGPKVCYKKWRNASQEKSNYGLHQDWRRVTKACEACATE
KAHPTSNLKGALDSKTFSPGSSWQVDLIGPLPGAAVPNKGLIAIDLGTRQVTVIPLQKTHATAVISALTSIFAVWQVPQI
IQSDGGPPFTSTAVDKFAHLHNIRWHXHLPYHPQSNGVVERAVGLXKEALRLRGQGSYKNWTKFNHEVLINLNSGKQLWV
EGNDKPVDPWTPKFQTEELVWVSLPDPKSRHPRVLKGVIRSAEKYPNTYLTQLEDSTRTILVHHNWLARRAITDPILPKD
D
>ERV7_MD_gag#LTR/ERVK 117-1734 via tfasty with HERVK14_gag, 1 frameshift and 2 stopcodons.  [Monodelphis]
MGQKLSSHTCYIRLLKSLIQKRGIKISETKLQALIKSILKFYPDFPSKGVVNVQEWDQIGQIMKQNQKEGQKLSQDIWNT
WNIVRMALAAEPLQDSMDKSEKSLEFPEPEPHSSPPIFPNTSLSPPPQAHSSTPPPPFSPTTYPSFSTLPPPPMVPAKDK
ASTGPALYPNLFPLTHPVLQNHSNTIPLDTAFIPPPPPPLQYDPSFQIHPAPPHTPLSPEATRIVSVRKAIQRALPEERA
EFLACPSSPERQPKxSNEQLAEHRIFxFKTLKALRDSVVQNGNTAPFTIALIRNISQQFLTPDDWHVLAESTLNGGDYLN
WKLKFQDLCQEQARANRRAGLNISYDQLVGQGEFAVLDRQILYTEQIYGQIALAAKRAWQSLPAKEKVANSYTEIIQKPK
ESFADFVDRLSTAIKRQIPHEGAAEVLLKDLAYRNSNSDSKRALAPIKATGSLTDFIRACQDIGTFEHKTVLAAQLKRPK
GPCFSCGQTGHFQKSCPKLQSKTLPGLCPKCKKGYHWASLCRNRAPHNHNYKNLTHMPKN
>ERV23_MD_gag#LTR/ERVK 451-2538 [Monodelphis domestica]
MGKTLSKEALFIKELKERIKERNVEVKKRDLLRFFSFIEQRCPWLILHGPGIHPLTWDKVGRDLNDFARSGQPIPEDFFT
FYGLIRDILKEADSSAQVSHLLSLAEDAIEESKKQTEETPELXNMDKKYKTPSQEIPELDNMDKKYKTPSLLDEPINTPS
HLPEPLPPSHRPALYPVLYDSNTPETLNPAYQTELDEAAAGYHPPDFLKNKPPPYNPLYPSSILPTLPNTNDLKIATAHL
TKQITDLKQFIDLQHEIGHLTSQLHDLQVATMKPISHSKKPKNNPSKLQKPLLALPVVTRRRTTTGTTPEDVDIEEIPDE
LSQPHQNSPPVSSESDREEGDEEANQGVHTTDTTRPHAHPFKRLKFKQIKDLHSAVKNYGLNAPFTLSILESLGGEGHLL
PSEWTKVIQSVLSRGQFLTWKAEFQERVENQAKSNLTNPQTANWTVDKLIGRGRYAPDTVQLRLPPGLLMQTAHAALAAW
RAVPASGAITAPISKILQGPNEPYAQFVARLLETTERVLGQDGTDNPVVRHLAIENANPACKAALRGKSRELDLNGMIRL
CNDIDSYDHRINKSISLAIGAAIQATRQNAPRNCFKCGMPGHFARECPSNQATPSLPFSPSGVPSRPPPSVCPKCRKGRH
WARDCRSKTTSNGQNIQPVQGNGMRGSLGSPFPTPLLEPQQAAQAWTSVPPPPEY
>ERV7_MD_pol#LTR/ERVK 1893-5284 via tfasty with ERV1_MD_pol, 3 frameshifts.  [Monodelphis]
MGIFPIPTNFDFTVSQESIGLVLGKHNLLAQGLEVLPQVIDKQMGERVNILARAISSFNITKGMEIATLLLLAKTPLLEK
NTEETEHSESHTPNLYWTQKITKDRLIMSLYVEDKIMTGILDSGADISVISTRDWPESWAAITPQQQLIGIGVPKNILQS
ARDLSWSDDEGHKGIFRPYILDIPQSLWGREVMAEMNITLTTSNQAHSAFFGSVMNSTTKFADPITWIDSKPVWINQWPI
SREKLLHLNELIQEQLNLGHIKESNSPWNTPIFLVPKKSGKWRLVHDLRKVNEQMLDMGTRQPGIPSPSPIPMNWNLIVI
DLKDCFFHIPLSPQDCHRFAFSVPSINFKRPFKRYEWLVLPQGMKNSSTLCQKFVAQALEEVRKKYKGQYICQYLDDIML
AAPSNDIVQDMLADTKAALTKAKLVISPEKIQIKPPYKYLGTIVYDQEIRPQKIEIRRDCLKTLNDFQKLMGDINWLRPF
LKITTGQLENLFATLRGDPSLSSPRVLSPKAEDELQIVEAALSAARLYRIDPSLPLVASVISTRYTPTGALHQGDHIIEW
IHLANQQTKSLTSYLELMVLIITQIRKRSQQLIGCDPDTIHLPITQEQIQNLFAQSLPWQIALADFTGKIDNHIPSNKIL
QFVKLTPIIFPKITSMHPIINAVNVFTDASKKHGKAGAVVNNHVMLMHTQYSSPQKAELAAVRNVLKDVTEPCNIICDSL
YVVNLVNSLETAKIKPVHDEELFLLFRTTQTVILKRQNKFFITHIRSHTNLPGPLSEGNSKVDALVASAFQKAVNSHSLL
HQNAKSLKSQFDITKRQAKEIIQQCSSCAPFSSNPLPAGVNPRGLKANQLWQMDVTQYAPFGRLKYIHVIVDTYSHVIWA
TAQNGEKVCHVIAHLLESFAHLGIPKQIKTDNGTAYTSKRFAEFCKLWNISHKTGIPGNSTGQAIVERANRTLKTQIQKQ
KGEYQTIYEGNIMKPKPINPNKLLKMVLLTINHFSIPEGLTATPMQKHFECHDKDGTVQQPWVFWRLPGEKDYRGPNRII
TMITLGRGFACISTDNGNIWTPTKHIKPWRGPDPDAEGADRQPGQSTTHHAAQDQEEKQTNNTDDISQLHTSHTQDTPDE
TITGDYTHTKD
>DIRS-4_NV_yr#LTR/DIRS 1693-2682 [Nematostella vectensis]
PAGLPLIRQTLEGNELGKETIDIIMASWRTGTCKQYNVYLQRWLAFCKDNAISLERATVQDGLTFLTRLYHEGLGYSAIN
TARSALSTVITTSNGTFGEHPLVTRFLKGIFELRPSLPRYKHIWDIGVVLRYLRSMPPHMELSLKELTKKLTTLLAILTV
QRCQTLVKLDTQYMQIMDKKIVFTIRETLKTSRPGKHIQPIELHAYEADNRLCPVTLINSYVQRTQTLRGQHTALLISHA
KPHNPVTNATVARWVKSTLQDSGIDTNVFSAHSSRTAAASCSASAGLPLQDILKAGAWSTELTFARFYNKPVEPLNIGNE
LLQQLNMNN
>Copia-69_MLP#LTR/Copia 54-4733 63.7% sim to Copia-14_SI, SW:1365, [Melampsora larici-populina]
MSGREEALDDSQLPTPASTPAPYSEDTDETYAGSQTEDQSENSNSSESAHSAHTTVPSANMAATAPIDTDTPAQRQSIKM
NSILHKITINIKLSTSNYVAWSDAIRFGLMATSYDHYLDSEDAGGTGMDPEVLSATKKALFYWLLSSIDLIQSTRFISMI
SKFENGIKITIPSPSLLWKTIREYHISNSESVKLMLRSEITDLSQTSSKDLLEYIDIFRAKVDAYLGSNGEMSEEEQARQ
FVRSLNQSWAEKGCDLLDAGHVKFRNLETELKKTYQTRKMFSSNRQQSSRIAESSEASQSRRTGRWQTCSKTKCLGQDHP
TKPHDQLECYHHPNNASKMESWKRSKQESGEWIKYPRGGRGGGRGGFCGRGRGGRGAHLARGLNHHSNLSDFPNSEELDM
AFENLKLEEREVSYRVEIDGKFSCSADPQVTCAGDKCGSVALIDTGASHHMFHDASLFESATLMENHDPGAKLNLAGGGA
TLDIHSIGNVNLLNSKGEIIKLKDCLYVPDLSRNLIAGGRLLRAGAVTTVLEDPHFRIDHGKKELFIGQFIGEGSMMYVA
IRSPVSHRSHLSSISKSNQLTILKLHYSLGHPSEKYLKRMWSLGYLDDVLPKTVTTNDFEIITRCPVCPLAKNHRLPFSS
TRPRAIKFLENVHVDLSGIIRTSSVNQEEYYILFTDDYSSYRVSFGLPDKSAETVFEVFKRYISFAERQTGEKLKMFSFD
GGGEFINGLLTPYLEDLGIITRVTSPHTPEENGVAERSNRTINTKARCMMIQSCIPIKYWYHAVSYSVMLQNRTITTSLN
LKTTPYALWKGRQPSLKRFLPFGCLAYRHIRKEIRGGKFEAVSRPGILIGVAEDNHNFIILDQESNQIHTSHDVTFQPLV
FPFLKDAEDNPDWLFIEDLPLEPTERNEPENEPNENTMTRPDLTDDEDDMLMESLTPKTILETPPINHEDEPPVEEDPIS
NTKDQTTTIQPSVQDEPRRSTRDRRPVQRYAPGESDWAEAPPMRSFVPKISQSSHLSKVYMCREAMKARAEPKSYKMAMK
MPDADEWKAACDKEMQNIMNMGVWEIVDRPKNAPVVGGRWHFKYKVHPDGTISKHKARYVAKGYTQTEGIDFNDTFAPTG
RLASFRILVAVAAAKNWSIEQMDAIAAFLNSDLKEEIYLELPEGYDSERANGKVARLKKALYGLKQSARCWSDEVKDKLL
SIGLIQNPHDACLWYGKDEEGLETLLYLHVDDMAITGDKIDEIKSLLKMKWKMEDLGPAHCVVGIEIYSTDNGGYALSQS
AFIQTVLERFHAEDSKPASTPFPGGTKIMKATDSDVIEFKQSNLPYNSLVGSLMYIAQGTRPDIAYAVGALSQHLSRPST
IAWQMGLHVLRYLKGTQCLGLHYSPQDNVIEGNQSWCYPECHTDSDWAGDPNTRRSTTGYLFKLNGAAVSWKSRLQPTVS
LSSTEAEYKATTEAGQEVVWLRGLLSNISLPQSEATVLCSDSTGAVSLTKKAIFHARTKHIEVQYHWIREQVEKNLIKLR
HISTKNMFADTLTKPLHPGPFKELRHQIGLEVIHGQLKQG
>Copia-66_ZM#LTR/Copia 487-4437  [Zea mays]
MMSTKIDIPKFDGKISFAIWQIQMKAVLTQLCVRKALQPRPADMADDKWEDLDEKALSALQLSLSPDVLREVMNAKSAAE
LWKKLEELYMTKSLANKLRLKERLYTIRMAEGTSIQSHLNEFNSICVDLESLDVKIDDEDKAILLVVSLPPSFKHFKEIM
LYGNHTSLTFENVKSNLLSKEKFDVDSRSESKGEGFIVRGRTQQAGSSNKPKSRSKSRDRKSNNFCRYCKADNHVISQCP
KLKNKEERQKKKEADKSAAEASIVENSDGGEALMITSNDEKRMAWVLDSACSFHICSHREWFSDYSHVHDGDVIIGDESP
LEISGIGSVQIKVHDGTFKTLTNVRYVPKMKRNLISLGTLEAMGFKFSADNGVLKVSQGNRVVLKAERINNLYYLQGSTV
TGTAAVSIASNTSNTKLWHMRLGHMSEKGMHLLHKRGYLNDIGKLEFCEHCVFGKQKRVSFSLSTHCTKGILDYIHSDLW
GRAPHSSIGGCDYMITFIDDFSRKVWVYFLKHKNDALTAFKQWKALVENQTGRKIKKLRTDNGLEFCNSEFNSLCADHGI
ARHKTVPGTPQQNGVAERMNRTILERVRCMLSNAGLWDKHGLWAEAAXAACYLINRSPNSAIDFKIPEEVWTGKPVDYSN
LRIFGCPAYAHVNNGKLVPRAQKCTFIGYGSGVKGYRLLCADSKKVIVSRDVTFDESTFSSSGGVSDSGSSSTSMPETTD
ENLEVDVPINVDSVTPITQSVSVSVPPVSNNHSIAQDRPRRNIVLPHRYRDTDSMAHYALIAAQETNVAFEPSSYSEAIS
CDNSSKWLVAMNDEFESLQKNSTWKLVELPEGKKPLKCKWIYKKKEGISGVEPARFKARLVVKGFEQREGIDFNEVFSPV
VRHTSIRVMLAIVALFDLELEQLDVKTAFLHGDLDEEIYMTQPQGFSAPGQEHLVCHLQKSLYGLKQAPRQWYKRFDSFM
LAHGYSRSNYDHCIYLKQFPNGSFVYLLLYVDDMLIASHDKSLIVELKAQLSHEFDMKDLGPAKKILGMEIQRDRRAGTL
FLSQKSYIEKVLEKYNLSNCKSVATPFASHFKLSSRQCPVTEDEKEHMSHIPYSNAVGNLMYAMICTRPDLAHAVSVVSR
FMHNPGKEHWNAVKWILRYLKGTSHFGLLFDKNSVKEIGVMGFVEGFVDSDFAGDLDKRRSISGYVFSLCGSAVSWRASL
QSVTALSTTEAEYVSATEGVKEAIWMRGLISELGVPQDVIKVYCDSHSAICLTKNDMYQFKTKHIDIKYHFIRDIVAEGK
IKVDKIHTDENPADMLTKPLSNTKFKHCLDLVGVRGA
>Copia-69_SB_gag#LTR/Copia 64-2682 [Sorghum bicolor]
MERGSGKPPFFDGTNYPYWKIRMSAHLQGIDWLVWEICEDATFVVLEPRARTTQDQKDRHNANSRARSVLFSSLSLPEFE
RVSDCATAREIWVRLQSYHEGTAHVKTRLYETYKREYENFTQLDGESIDAMFSRFQTIINKMRANKAQLPYDDHERALKL
LYALDRKVWDVKVSAIIESSNYDTITVDELFSKLKSTEIDYQTQAKLKNPSAPTMALVSGNSSSSSANPSQMSFALSSLV
SVSEEQLETLGDDELALIISRFSRFHNNRLNRRRGGDQKVGCYNCGDLDHFVAHCPKKNKHSSDKYDSGKRKDKRDYTSK
KYKSKKGFDKEALKKMYRKKAKAQERAFLASLSDLDNDSGDDRSSSPSSDDESERKMEEKLTGLCFVADSTHGGFCTMAI
DEEVKASKDEVSFDDDTSEVPPSVDDLVAELDSMNITLISQDKLLKRAARERKEFKDKLELALKELEVAKECAVVVSDEV
ECDECAVHMSNFSELQSKYATLLDEYGELKARPVLLGACKSCSGLQSELAEKNAKISILEKASSDSTIAKCARCESLVLE
LESCRHDKMRFEEDNTYLRSILSWVSSSEPQLGMMMSQFRRGTCTSGVGFAIGGKGENLYGKVGEFSGLSPSEKPSTTPK
LIKFTPPEPSKLTVKDGVFEEPPKSPPQKQVWIPKPNHLRNPLDTLPNISEDPLPKAKKPPRVNHTHKRVNQQPPKREVR
YHCEYCHRDGHLVEFCFRRKRDERREYELNNRNMYRPPHGVHVPPVQRRSARPRGAMPQGARPQLARPRGGRARRGSGHD
QYDFEPRGGGFASQSHSSSGPRFPFRGDRFPQMGHGMLGVFPNTFPGQMTQHWYPSQFTNPSVAPFAHPMSFY
>Copia-70_SB#LTR/Copia 313-4901 via tfasty with OSCopia2, 1 frameshift and 2 stopcodons. SZ-17 over 80% identical and fragmentary. [Sorghum bicolor]
MAGDDSETAAAADKEAEARRLAEERAEAARRAEEARLRADALDKYEASHEAVWAQATAVVNVKVMIPIILDKATGTYTKW
RGLFLTVLGKYALAPHVLDDEGLPDRPVWVQVDCVVLSWIFGTVSSDLQQSLMIRQRRAREAWCYLEDEFLGQKESRALL
LETQFRNLRHDSMTVTDYCRKLETMAASLAEFGDPIGDRQLVLTLLCGLNGKFRHMVSILKMHRPFPSFADARTHLLLEE
IDIDARPPSPPPALIANTPPAPAAPRQGAAAPSAHARPPSHQQGAQPGGQQGGQRSRRRGRGGRGxGPGHQHQQQTPPQP
GLSRAPPGFTHPWAGTLQMWPYGCQPPPPPAFTTSTPQYGAPFSGTPSGGIGPYGRGPNVMFYGAGAGAGYPYGYGGSMP
STSAFQGTPYHSVPWNPTHGGAWNQESLVQNFNMMALNPPAQAEWYADSGAGSHMSADAGILSTTSPPNLSTPSSIIVGN
GALLPVTSQPSDPVCFSFPHRNLVLNNVLVSPHIIKNLISICRFTIDNNCSIEFHPFGLSVKDLQTRNVIARCNSSGDLY
PFFPPATSATALLAAPTSLWHRRLGHLGREALSHLISSSAISCNKDDTHHLCHACQLSRHTRLAFNISTSRATNNFDLIH
CDLWTSPIVSVFGYKYYLVILDDCSHYIWTFSLRIKSDTFSTIANFFAHVRTQFGTTIKSVQCDNGREFDNSMARTFFLS
HGVALRMSCPYTSQQNGKAERSIRTINNILRSLLFQASLPPVYWVEALHTATYLVNRLPTKTLASSSTPFFHLYSTQPSY
EHLKVFGCACYPNMSSTAPHKLAPRSSLCVFLAYSSEHKGYRCLELESNRIITSQHVVFDESFFPFVDMSTTPMASSALD
FLVDDDELTAPLPGAKFVHAGTPAATSPRAGPSSPAPQTPATGPLAQQAHGSPVAGPQLGGPPGGSPTEPLATSLSPAGA
AAPVRHVQVAASSAAATGRTLATRPVSIAPVDNAHSMRTRGKAGIAQPVDRLNLHVVPMSPLPRSVRDALSDPNWRSAMQ
AEFDALIANDTWSLLPRPPGVNVVTGKWIFRHKLHADGSLDRYKARWVLRGFTQRPGLDYDETFSPVVKPATVRVILSLA
LSQDWPIHQLDVKNAFLHGTLAETVYCVQPTGFVDSSGPGLVCRLNKSLYGLKQAPRAWHHRFASYLSSIGFVETKSDSS
LFIYRRGSDTAYLLLYVDDIVLTASSAQFLHQVIAALQREFAMTDMGQLHHFLGTSVTRSTKGMFLSQQQYTLDILERVG
MSACKPCSTPIDLHSKLSEDGPPVGDATQYRSLAGALQYLTFTCPYIAFAVQQICLYMHDPREPHLATLKRILRYLQGTT
TLGLTMCRSSPTELVVYTDADWAGCPDTRRSTSGYAVFLGDNLVSWSSKRHHTVSRSSAEDEYRAVANGVAEATWLRQLL
LELQRPPRRATLVYCDNVSAVYLSSNPVQHQRTKHVEIDLHFVREKVALGHVRVTHVPTTSxYADVFTKGLPTSLFQEFR
SSLTISDAPD
>Copia-70_BRa#LTR/Copia 182-4300 via tfasty with Copia-91_BRa, 82.8% SW:4215, 1 stopcodon. [Brassica rapa]
MEPTPGKFEVVKFDGKGDFGLWKFKMMAHLEIQGLLSVLTEEDESKTEEAKKEEGEEVKKVITRAEKDLRVRSLFSTCLS
DVILRKIMNETTALGMWKALERDYQTKSLPNRIYLKKKFSCFRMEEDKAMEENFDSFLKLVADLASIKIDISDEDQAIQL
LSGLPPVYEPLVHTLQYGTGRDTLTVNEVMTAAYSKEAELKQKGLTSKGKQSEGLYTESRGRSTTRNEGGSNKPWTSRNK
GKFRSKSRGKSTGKQDKTCWVCGSESHWKRDCPERKKVSQYDRTSSAANMAERLPGPIALTASLLVSEEEWVLDSGCTFH
ITPRRELLTEFKEFDGNKVMMGNNSYCMVRGMGKITIDNHDGTVVTLSDVRYIPEMGRNLISYGQLESSGCNYTGKDYQF
EFFKGGKRVLMGKYAKGLYYLQGTVRSAEASLANETVDHTKRWHTRLAHMNIRSMEALARKGYLKREEIKKLEFCEGCVM
GKSHKQKFPRGRHTTKEILEYIHTDLxGSPNTVSSLSGAQYFLTLTDDFSKKVWIYFLKTKDEVFSCFAEWKLMVENQTG
KRVKCLRTDNGLEFCNRKMDELCKASGIRRHKTCPYTPQQNGVSERLNRTIMDKVRSMLVETGLSESFWAEAASTAVYII
NRSPNASIRFEIPEEKWSNRRPEYSHLKSFGCMAYVHQVKQKTSPRASKGIFLGYGQGTKGYRVWLIEDERVVISKDVVF
NEEKLYKDIKEEEDLTAQTKETTTVQAQKKKVTFRSNLEEFYVGETSKAGGAIEGESRPTSQNDDSQNNIDDLPENEHTD
ADSEDEKAEEINLDTYVLARDRERRTIRPPSKFEDADFLAYALASAENLEEEEPKSYKEATQSKECKLWNDASDEEMRSL
DKNHTWDYTARPKDHKVIGCKWLYKYKPGIPGVEKPRHKARLVAKGYAQTEGIDYNEVFAPVVKHVSIRLLLSAVVQYNL
ELEQLDVKTAFLHGVLKERVYMEQPEGYVQKGKEDQVCLLRKSLYGLKQSPREWNYRFHTFMIKQGYLRSEYDPCVYLKG
ESVEDMVYLLLYVDDMLIASKKMSTIQRLKDELSTEFEMKDLGAARRILGMDIIRDKSQGKLLLSQNEYLAKVLRTFGME
GCKAVSTPLGSQFRLQAVTKDQEQIEAKEMENVPYSSAVGSLMYAMVGSRPDLAYAVGVVCRYMSKPARNHWSAVKWIMR
YIKGAMGLSLTFRQGEDFKIRGYCDSDYASDLDRSRSITGYVYTIGGNTVSWRSSLQKVVALSTTEAEYMALSDAVREGI
WLKGICEELKLNSGEFEVHCDSQSAIYLAKNFVYREKTKHIATKFNFIREVIADGIVNVMKIHTLVNPADMLTKTLPGEK
FDGCLAKLSILED
>Copia-64_BRa#LTR/Copia 37-4132 via tfasty with Copia-73_BRa, 88.4% SW:5202, 1 frameshift and 1 stopcodon. [Brassica rapa]
MADSYPFPKNVHILSSVTLKLNDGNYLLWKTQFESLLSSQKLVGFVNGGVTQPEATVTVVQDGVDVENSNPAYESWFCSD
QLVRSWLFGTLSEEVLGYVHNLPTSREIWLSLAENFNKSSLAREFTLRRNLQLLTNKGKTLAVYSREFKSMCDALSSIGK
PIDESMKIFGFLNGLGREYDPITTVIQSSLTKFPQPTFNDVVSEVQGFYSKLKSYEENATVSPQMVFNTHQYQNSQEHKQ
ATPTYNPQQRGRGRSSYFRGRGGYSTRGRGFTQHQSTPTGSGNRPTCQICGRIGHTALKCYNRFDNNYQSNDAFSALRMT
DESGKEWYPDSGATTHVTSSTQNLHNAHPYEGNDAVMVGDGAYLPITHVGAANITSGSGTIPLKEVLVCPDIKKSLLSVS
KLCDDYPCGVYFDAHNVSVIDLQTQKVVSKGPRTKGLYMLKSDEFVAFYSSRHVAASEAVWHHRLGHSNLRILQHLQASK
EIKVNKSRTSPICEPCQMGKSSRLQFSYSSSSVSEPLDCIHSDLWGPSPVASNQGFRYYVIFVDEHTRYTWFFPLHNKTE
FLSVFTAFQKLVENQLDRKIKVFQSDGGGEYINQRFRDHLSHHGIQHRVSCPYTPEQNGLAERKHxHLTELGLSMMFHSH
LPLNHWVEAFYTASYIGNFLPGLSKGSKSPAELLLKSKPDYSHLRVFGSACYPYLRPVADHKLEPRSLKCVFLGYSPNYK
GYRCLYAPTGKVYISRHVVFDEKCFPFKEDYKHLVPRYESTLLKAWQTATSSPSIPTDERCIRILPPPPDPVTAAPIPPP
PPSPIQEADNNYQEMEAPVPQVVPLENTHSMTTRAKSGIQKPNSRYALLVSKFVPEIPKNITEAMKHPGWNGAVGEEMTK
YTWTLVPATPEMNILSSRWVFTVKFNPDGTVKQLKARLVTKGYEQEEGLDYLETFSPVVRTATIRVVLNVAVAKGWSLRQ
LDVSSAFLHGELKEPVYMYQPPGFEDPNRPNHVCRLTKALYGLKQAPRAWFDTFSEFLIDFGFCCSKSDPSLFTYHRNNK
TLVLLLYVDDILLTGSDEGLLQDLLGVLKQRFPMKDLGKPSYFLGIEIESYDGGLFLHQAAYVRDILHQTAMSDCNPMAT
PLPLRLEYEESALFTEPTYFRSVAGKLQYLTITCPDIQYAVNFVCQRMHAPTQADFGFLKRILRYIKGTQSLGLHIKKQS
ILTLSAYCDSDWAGCKETRRSTTGFGTLLGPNLLSWSAKRQATVSRSSTEAEYRALGSTAQEIAWISFLLRDIGISQPHA
TMLLCDNLSAVYLSANPAMHKRSKHFDTDYHYIREQVALGLIETRHIPATQQLADIFTKSLPRRAFMELRDKLGVGSPPT
TSLRG
>Copia-61_ZM#LTR/Copia 53-4349 via tfasty with Retrofit7, 78.7% SW:4132, 2 frameshifts and 4 stopcodons. [Zea mays]
MASSSSFSSLGHPITEKLTRDNFMLWKAQFIPAVRGAQLFGFLDGSVKVPEQEIENSENKKEENPAYARWVVQDQQLLSF
LNSSLSREVLGQVADQxTSAGVWKKLMEMYSSQSRARVLHLRSKLSSTRKGEMTCVVYFALMKGYADEMAAAGKKIDFFD
FVSYIISGLDADYNPMVEAICVKAEPTSLSDLYANMLSTESRLEAQNTPSYVTANFSNRGARSGGRSGRGRERGRGRGGR
NNFSQVQCQLCGRNGHVVQKCWKRFDKNFTGEEKIVNAAANYNSYGIDTNWYTDTGATHHITGELDKLTTREKYQGQEQV
HVTNGAGMSISHIGHTSFRTPLRTVHLNNILYSSQAKKNLISVHRLTKENNAYVEFHPNYFLVKDKATVKTLLQGRCEGG
LYPLPRNIRSLSSSKQACATLKPTISRxHDRLGHPSSVIVQKIVRESDLSCGISQDESVCDACQQAKSHQLPYPKSSSVS
KVPLELIFSDVWGPAKQSIGRNKYYVSFIDDYSKFIWIYPIKFKSDVFQWFLEFQSFVERQFDRKILAIQTDWGGGEYQK
LSPFFTRIGIAHHVSCPHAHQQNGSAERKHRHIVEVGLSLLARASMPLKFWDEAFATAAYLINRLPSRVINYDTPLHRLF
NSSPDYSMLRTFGCACWPHLRPYNTHKLQFRSKKCVFLGYSPLHKGYKCLDTSTGRIYISRDVVFDDTCFPLSALHSYKN
TNSQIHSEQNLLDLDPTLYPTGDETLVSDNVINVSNPVGHNGTAPVHFISGTTAVEPGSTRTFSLGHASEAATPVMSLVP
SMGDVAPLSHLPAINVPTFSPLIATDVANVPSPVPASDDVAPLCQPVAPSSGSALPLSSPHHDVSEASTQLESVAPADQE
QGDLTFANPRPVTRLQRGIVKSKxYTDGTIRYGLSSAICEPQTVQEAMQSLDWKIAMDTEFLALQQNKTWSLVHPKQAQN
LIDCKWVFKVKRKADGSIDRYKARLVAKGFKQRYGLDYEDTFSPVVKAATIRLILSIAVSRGWILRQLDVQNAFLHGVLE
EEVFMRQPPGYEDKARPEYVCKLNKSLYGLKQAPRAWYSRLSAKLLQLGFSASKGDTSLFFYSKGPVTIYLLVYVDDIIV
ASSSQSAVDAMLKDLRAEFPLKDLGELNYFLGIEVNKIQNGILLSQEKYTRDILGKVGMSQCKPASTPLLVSEKLSRVNG
TPLDANGATKYRSVVGALQYVTLTRPDIVLAVNKVCQFLHNPTDVHWTAVKRILRYLGGTLGVGIKICNSSSLLVSAFSD
ADWGGCPDDRRSTGGFAVFLGSNLVSWSAKKQATVSRSSTESEYKSLANATAEIIWVQSILRELGVPQEKAPCLWCDNLG
ATYLSANPVFHARTKHIEIDYHFVRERMAKKMLDIRIISTNDQLADGFTKPLGAKQMELFRYNLNLTKLxLRG
>Copia-60_ST#LTR/Copia 70-4496 via tfasty with Copia-74_ST, 71.5% SW:3457, 1 frameshift. [Solanum tuberosum]
MVNTQPSDTPVASPVDLPGTQPLPPPQTSSNNDHSHPFYLHPSDSPGMLLVNSTFNGNGYGAWRRAMFIALSAKNKIGLI
DGTFLEPQIYAPLYTAWSRCNDMVISWLLNSLSKEIAESVLYSRTSRNIWQELEDRFGQSNGAMLYQLQKELSDLTQGNS
DVAGYFTKVKRIWDELDSLDTCNHCSCECSCGGKDKTLKSHQVGRLIQFLMGLNDTYSGVRSNILMSTPLPSINHAYSLL
IQDEKQREIRVSQHSAESAFMTTKNQFGAQRFNRYPEAKKNTLQCSHCKKPGHSADKCYRIIGFPADFKFTKSKKTQFGT
AHGHAAVASEAEGSKSTSQQHITQEQYNNICHLLQQFKFESPEELSSEVTVTANCAGIPEHSALKSDSIVWILDSGASEH
MTCDLNLLFNVRALTKPVFVNLPNSQRVKVTQAGCVNIFPNFTISNVLFLPSFKYNLLSVHRFCQLGDSILIFSASCAIL
QAPSMKRPVVLGRQKEGLYLLHSFKPRTSSLSKIKDSCPMSFICSSDQTVFPISCSAVGSSDVILWHNRLGHLPLSNMRN
IPSITCSNSSSFLDHCVICAKARQVKLPFQSSTISTTDIFELIHIDTWGPYKDSTHDGFKYFLTIVDDFSRGTWTYLLSA
KSNAFPVLKTFLAMIERQFSRKVKKIRSDNALELGTSLEASQFFSSQGILHQTTCVYTPQQNGVVERKHKHLLETCRALL
YQSNLPISFWGECLLTATFLINRFPSKTLQHKSPYEILFGTPPSYENLRAFGCLAYACTLPIHRSKLDPRSIPCVFIGYP
AGKKGFKLLNLKSMQVFVSRNVKFHEAIFPFISQTVNPLFFPVHSPSFHVSDDSTLPVPTPLIFPFSDTLTSSSTGHSPS
PTSLVSPDRSPSPVVPTTLIPTRASTRAHKTPSYLKDYICNSVFLSPVITSCFSTPIQPSVLSFSALSSTNQALLNSTSH
ISEPTSYSQASLHPGWQMAMTKEFEALNLNKTWDVVMLPAGKKALPCKWVYKAKYRSDGALERLKARLVVRGDIQRQGID
FTETFSPVVKMTTIRCILAVAVKLGWDLFQLDVDNAFLHGDLQEEVYMKFSPGMSAPSPNHVCLLRKSLYGLRQASRQWY
ARLTAALSFKGYSHSLNDYSLFFKSSGGLITMLAVYVDDILITGNDLPEQQQLKNFLHAEFRIKDLGKAHFFLGMEIIRE
PTGLILTQKKFTFELLQEFDCFGLRPASASLDPTQKLFADKGELLSDPTLYRRLLGKLNFLTHTRPDLSFTVQHLSQFMQ
TPRQPHLNAVFHCLRYLLKEPNLGLLMNVDPCLQLVAFCDSDWGTCPESRRSVSGYYISFGGSPVSWKSKKQSLVSLSSA
EAEYRSMRRVVAEITWLVRLFADLSITPSLPVTLHSDSQVAIHIANNPVFHERTKHVELDCHFVRQQFLAGLISLSYLPS
HSQLADVFTKSLSGPSHRSNVHKLGVTSSPSNLRGD
>Copia-62_SB#LTR/Copia 99-3131 Fragment (N term missing) [Sorghum bicolor]
SRSTPSFPLQLRNVLIAPQIVKNLISVRALTRDNNVSVEFDPWGFSIKDLRTRMALLRCDSSGELYPLRQASATVPPSSS
ALLASHASTLWHARLGHPGHDALQQLSRSIGFHCSKSSPHTCDACRRGKHVRLPFSVSNNVSSFPFQLLHCDVWTSPIMS
NSGFKYYLVIMDDYSHYVWTFPLRHKSDVLPTLISFHAFVRTQFQTSIMCLQTDNGKEFDNSASRAFFATHGIVLRLTCP
YTSQQNGRAERVLLTLNDGVRTLLFQASIPPTFWPDALAASTYLLNRRLCRPRNNCTPFHLLFGVPPEYSHLRVFGCLCY
PNLTSTAPHKLAPRSTKCIFLGYPLDQKGYKCYNPMTKRVIISRHVYFDETCFPFTQVDAAAPTTDSACSSCPSDDVLIQ
SGPRQPRRRAPVAAQHAATPAQPSVGTHPEVQVHSPATDNDPVPPAATPPPPAAEPAPSPEHAVQPPRHPMITRAHDGIR
LPNPKYAHLVTTSAPTPPPTSVRAALRDPEWLAAMKDEYDALQKNGTWTLVPRPARANIITGKWLFKNKLHPDGTLERRK
ARWVVRGFSQRPGVDFQQTFSPVIKPATIRTVLHLAAIRRWTVHQLDVKNAFLHGDLAERVYCHQPAGFVDKDHPDHVCL
LVKSLYGLKQAPRAWFLRLGNHLLAMGFTASGSDSSLFIYQHGTHVAYLLVYVDDIILTASSTALLRQVVDHLRQAFAIK
DLGALHFFLGIQVRRDAAGFHLNQAQYAEDILERAGMANCKPATTPVEVQPKLSATDGEAVTDATFYRSITGALQYLTLS
RPDIAYGVNQAGLHMHAPRDVHWNLVKRILRYIRGTINHGITISATPSTTLIVYSDADWAGCPDTRRSTSGYCVFLGDSL
VSWSSKRQTTVSRSSAEAEYRAVANAAAECCWLRNLLRELHVVVDKATVIYCDNVSAVYLSENPVHHRRTKHIELDIHFV
REKVALGQFKVLHVPTRYQFADIMTKGLPTPLFSEFRDSLCIRSIDASTEG
>Copia-63_VV#LTR/Copia 57-4241 via tfasty with Copia30-PTR, 75.7% SW:3703, 3 stopcodons. [Vitis vinifera]
MAFSSSASSNVIFAPPNIGHLVSIKLSDTNYLIWSSQIVLVLKSHDLMGFVDGFEPCPSKSLDGSLNPAYILWNKKDQCV
LSWINATLSDKVLASVYGITSAREVWSSLANKFASQSRTRVHHLKRKLxTLHQGSMKCTDFLEKAKLVSDELAAVGKPLK
DDDLMSYIVSGLNPSFNPFITSLSFATRDKNVSFEDFQAELLSYELLLENQNIAIPPETNNFAFFIPKSNQQQYNRKPKN
PSKPYSRPSFSQNPRPRYSPQPSGLPSSPQPNQKQHSFSTPKAPCQICGKLSHKALDCFHRMDYAYQGRHPPTxLAAMVA
HSNAEQEEETWFADSGANQHITANLEHLTLQQPYTGQENVAVGNGQGLSIAHTGTTIFHTPEAKLNLKRVLHCPQASANL
LSINQFRLDNNCLFILTGTHYFVKDIQTGATLLEGRSEGGLYPIQLRSMSINKSHALSVVVGIKAPVSVWHSRLGHASLP
IVSQLLNKHSLPVEGLVNKMHFCEPCQLGKGKQLPFKPSTCVSSFPLQLIHTDVWSCSTKSLSGCKYYVIFIDDFSRFSW
LYPLQNKSDVYACFVKFKTLVENQFSCKIKQLQSDGGGEYMSNQFQLFLSSNGIQHRRTCPHTPQQNGVAERKHRHVVEM
GLSLLAQSLLPTKFWVDAFLTSIFLINRLPTSTLDNQTPNLKLFGKHPDYTSLRTFGCACFPLLRPYATHKLMFRSKRCI
FLGYSSHQNGYRCLDPVTQKVLISxHVVFNENTFLAKDGLQSSELLPVVSSQGTPLPSPSFSLSTSNLQHSSPIISDSPD
SPLESLPIPTSPHISTLPSPIPGPAPTLSIPEFSSSSNHSHHPMTTRSQTGNLKPRTFSDFKLYSTQYPLQALSSTVTPL
APTSYRQAALLLDWCVAMREEYDALLANETWKLCPRPVDHNVVGNKWVYKVKQTSTGEVDRFKARLVALGFAQEEGIDFT
ETFSPVIKPSTVRVLLTLSIQFDWEIRQLDVSNAFLHGILLKDVYMEQPKGFVNSDFPDYVCKLNKSLYGLKQAPRAWFM
RLSQTLLEFGFLSSPVDASLFVYHKGHIHLFILIYIDDILVTGTYPSLIQSLIQKLQTEFKMKDLGPLGYFLGIQASRDS
SGLHLRQSKYIGDLLHRTKMAGAKPASSPCTTGLKLSTHVGEPLTASQITEYRQTVGALQYCTLTRPDIAFSVNQLCQHM
HCPNSVHWTAAKCVLRYLKGTIDLGLWYTKGEQTLQAFCDSDWAGNPDDQRSTIGYGVFFGSCLISWTAKKQYVVARSST
EAEYRTLAITTAELYWIRMLLKELHISLPTAPTIWCDNSGALALASNPVFHARTKHIEVDFHFIREKVANRDISLQFIGS
YDQPADIFTKGLSLARFCLLRDKLMVVSLPISLRG
>Copia-63_SB#LTR/Copia 75-4480 via tfasty with Copia-26_SB, 1 frameshift. [Sorghum bicolor]
TFLPVTEKLTRTNHQSWKAQVLSALRGAQLADWLEANAEPPAKFLTKIKPDDPDKANPDYATWVAKDQTVLSYLLTNLSK
EVLAQVNTEVTAKGAWAAIEGLFASQSRVKIITTRMQLATITKGTSTIGEYFTKIKALADQMAAAGRKIEDEELVSYVLT
GLGEDFDSIVAAISTRVEPIFIHELLAQHTSHEPRVVLRNGGDQQSSANVVTKGGRPTSYHNRGNGVGRGGGGGRNDRGG
RGFARGNHNGGRGSNFIQGLICQVCGKEGHPAFRCFKCFNKDYNGGPPQKSASSSSTSSYGVDTNWYVVSGATDHITGEL
EKLSFRDKYHGGEQVHAADGLGMNITNVGHSFLHTPSRNLRLHKILHVPQSHKSLCSVNRLTKDNNVIVEFHPDHFLIKE
QVTGNILHRGWCEGGFYPLLLPSNKSSNKQALHAVKPAASFWHHRLGHPSTALVQEVLNRHKLSFFNDFNKSRVCDACQK
GKSHQLPYPRSTSLSSSPMDLIFSDVWGPAPSSIGRNKYYVSFIDDHTKFVWLYLLRNKSEVFERFRDFQNLVERQFGRK
IRAIQTDWGGEYQSLNTFFQRVGIAHLVYCPHAHQQNGAAERKHRHIVEMGLTLLAHASMPLKFWDEAFSTAVYLINRLP
SKVIANDTPFHRLYDTQPDYTLLQTFGCAVWPNLRPYNQHKLAFRSKQCIFLGYSSLHKGYKCLDPKEGRVYISRDVVFD
EHVFPFAALHSNAGVLLRKEISLLPEHLQPFSTSPEDANMHDHRLCSSNPANAPASFSHADILGTHGDPFGEEMASHGPD
LSSGNGRHFMCSRVSDITPFEADAPASTAEDPGASASGSAPRTSSVGVTVPAHSNPGSSAPDSAEPLSGSTSPPPQPDPI
AGGHLTASLSGDAGQNSRLIPITGSSTAATTAHHAPAAATPTADHAPPLPQRPTTRLQRGITKPKRFTDGTVRWGMLSTL
NTEEPFSLQAALNDKNWSQAMATEHEALLRNKIWHLVPRPMGKNIIGCKWMYKVKQKVDGSIDRYKARLVAKGFKQQYGL
DYEETFSPVVKAATIRLILSIVVSRGWSLRQLDVQNAFLHGILEEEVYMQQPPGYVDKNHPTYVCKLDKALYGLKQAPRA
WYDRLCKRLQALGFVPSKTDTSLFGKYCIFVLVYVDDIIVASSSSAATDALLKDLQRDFALKDLGDLHYFLGIEVKRVSD
GLILSQEKYATDILKWSGMHNAKPVDTPLSTSEKLRLTDGSPLGPDDSTKYISLVGALQYLTLTRPDISFAVNKICQFLH
APTTVHFSSVKRILRYVRGTVGSGIKIKRSSSTLVSAFSDADWAGCLDDRRSTGGFAIFFGDNLISWMARKQPTVSRSST
EAEYKALANATAETIWIQKLLTELRVPHPPAARLWCDNLGATYLSANPVFHARTKHIEVDFHFVRERVAQKLLQVRFIAS
EDQLADGFTKAIGAVKLKQFCHNLNLVRG
>Copia-70_VV#LTR/Copia 83-4384  [Vitis vinifera]
MTEQQPSNGGKLDAANPYFLHHSDHPGMVLVSKPLNGDNYSTWCRAMTISLNAKSKLGFIDGTTTMPSATDKPDEHASWK
KCNDMILSWILNSLSQDLADSVIFSTTAQEVWEDLRDRFSQSNAPRIFQIERDIACLTQDQMTVAAYYTRLKKLWDELGS
YNDTVCSCGADHKRRRLMQFLMGLNESYNAIRGQILLMNPLPDVAKAYSSIVQEEKQRSLGATRETTENSAMVVQRAEPM
ALAVRHGQGSSSRSNPSNRKPLHCSYCDRDHHVRETCWKLNGYPPEHPKHASNRSNHGSTHFKRNNSHQSSANNVKERPV
MQEVPSMTNGLSDLQIQQILSIMQGKGTTQSTNPKANAAASGLLQTLLHLHRLIIDSGATDHITSSPTLLVNSSKNTFLP
PVAMPSGEQAPITSIGNLPLNSAATLKNVLGVPSFKVDLMSVSRVTKDLNCSVTFFPHWCILQDLTTRTTIGLGEQRDGL
YYLVALASEKPKTQTPSAAATSCRSPSSQVTSSTALWHRRLGHLSSSRLDFMAKHLLNFPFQSNNACDVCALAKQRRLPF
SVSSISSVRPFELIHCDIWGPYKIASLSGAKYFLTIVDDYSRFTWVFFMHHKSETQHLLVNFFSFVQTQFHVSIANIRVD
NGGEFFSMREFFKQKGTTYQHSCVYTPQQNGVVERKHRHILESARAFRFQAHLPLPFWAECVSTAVHIINRLPTPLLSRQ
TPFERLYGKLPSYSHIRVFGCLAYATNVHVPHKFAPRAKRCIFLGYPVGQKAYKLYDLDTHQMFTSRDVVFHETIFPYES
IPSPSSNSDPVIPLSISDLSPPVPQPSPPEPISPVQQPSLPNSVSTQPSPASPPPEPILRRSQRPHHPPMALRDYVCNQV
TSPNHLPPLSSSPQKGTRYPLCNFVSYHRYSPQHRSFTAAVSQDIEPTSYAEAASHSHWQEAMQSELAALEANHTWSLTS
LPPGKKPIGCRWVYKIKRHSDGTIERFKARLVAKGYTQLEGIDYHDTFSPTAKMITVRCLLALAAAQNWSLHQLDVNNAF
LHGDLHEEIYMSPPPGLRRQGENLVCHLHKSLYGLKQASRQWFAKFSTAIQAAGFVQSKADYSLFTCRKGKSFTALLIYV
DDILITGNDVNAIVALKQFLHSHFRIKDLGDLKYFLGIEVSRSKKGISISQRKYTLEILKDGGFLGAKPVNFPMEQNTKL
SDSGELLKDPSQYRRLVGRLIYLTITRPDITYSVHVLSRFMHAPRRPHMEAALRVLRYLKNSPGQGLFFPSQNDLSLRAF
SDSDWAGCPISRRSTTGYCVFLGSSLISWRTKRQKTVSLSSAEAEYRAMAGACCELSWLRSLLKDLRILHPKPALLYCDN
TAALHIAANPVFHERTRHIEMDCHFIRDKIQDGSVVTKHIASTDQLADVFTKPLGKETFSTMIRKLGVLDIHSP
>Copia-87_Mad#LTR/Copia 135-4396  [Malus x domestica]
MAPAVSSSTASDSPILPPSEASNPNSSNSTSITIQNIGSMVPIKLTTTNYLTWSALFAPIFRRYNLTGLIDGSSPAPPQF
LTDSSGNRSLNPAYVAWFENDQNILIWLNSTLSESLIPYTVGVSSARELWAKLESRLAAASHSHIHELRSRLRSLTKGDL
TAAQYLQRTEEIADALASAGAPVEDSELISVILHGLPPEFDSFVDAIQFRLGSTTMDELHGLLLSKEIQLTNRKQSPPVS
SFQAYNTSTGLLPLPVPSISHGYVAQQSFSSHNQNRGLDRNFTRGNHNSRGNFRQNNNPRFSTFNRGNNQRSNRGPRSNF
SSNRKLSCQICRQFDHEACDCPHRMDPHYNGKSSQTALVANTSNSSSPWIVDSGATSHMTNNYATLQNPEVYTGPEQVYI
GDGKGLPITHTGSSSITTSHSNFALKNVLFVPDLKHNLLSANQFLIDNQCSMHLYPSHFTVKDLSSGRMRFKGPVQHGFY
PFYPSSHTGAKHTALTATPKASRTLWHGRLGHPSVKILNKLASQSCISVFQHKTSSFCSACALGKCSRLPFVSTTCTTTK
PLELIHTDVWGPSPIASQDGFRYYVIFVDDFTRYCWFYPLRYKSDVLSVFMXYKSLVENTLCTKIITLRSDSGGEYMSTL
FSTFLAQHGIQHQLSCPHTPEQNGCAERKHRHLVETARTLFAASKVPHLYWVDVFAAAIYLINRLPTLSRPSPWESLFKT
LPCYGTLRVFGCLCFPWLKPYTSSKLDAKSKPCVFLGYSLNHKGYKCLDPVTGRLYISRHVLFDESKFPFSDLSSSSPSS
PLQPASPSSAIPSSLTFTSLTPSSPSSPFSGPSSSPPPTAPPPSSPPSGPSSSPPPPAPPPPSPPPSSSINTHPMQTRSK
SGIYKPKAFTATNHPLPSHLSLDYIPTTYLQASKHPHWRQAMQEEFNALLHTQTWSLVPYHSSQNIVGCKWVFRIKRKPD
GSIDRYKARLVAKGFHQQEGLDYTETFSPVAKPVTIRLLLTLAAQFDWFLHQLDVSNAFLHGTLSESVFMQQPPGFADST
KPHHVCQLHKSLYGLKQAPRAWYDKLHAALASLGFVGSQSDHSLFVKKDKSLVFVLVYVDDILVTGPSSVDCQHVITQLS
NLFPIKDLGPLHYFLGLEVKRSSTGIFLSQTKYILDLLNKAKMVGAKPCNTPLSTSKIDHXSPLLDNASEYRSLVGALQY
LTWTRPDLSFAVNLVCQFMHTPKVSHFQAVKRILRYLKGTIDHGLWFSKCSSVPSLKAFSDADWAGCELDRRSTGGYCIF
LGNSLISWSAKKQPTVARSSTEAEYRSLANTASEITWICQLLADIGYCLPCSPQLWCDNVSAISLAKNPVFHARTKHVEL
DYHYIREKVVAKHISLHYICSQDQVADICTKSLAAARFLFLRDKLQLRVPQFRLRGDIKGN
>Copia-86_Mad#LTR/Copia 79-4410  Copia-31_Mad very similar, with many errors. [Malus x domestica]
MASHSKWENPNHPLYLHHSDQPGAILVPQPLVEDNYNTWVQSMSMALTVKNKLGFVDGTINKPSEDNFEELQQWNRCNNL
VKTWLLGSMSKEISGSVINYKDARQMWTDLQERFSHVNIVQLFHVENEIHDCVQSNMSVSSYFTKLKSLWDERDTLCSIP
ACSCGTKNEMNSYVETQKTMKFLMGLNESYATVRSNTLLLEPLPTVNKAYALVLRHERQAEVSNGKSTQLETAVFAVKNP
SREPTPEDKEMRCGKCNKTNHITKNCRAHLKCTFCGWKGHTFDFCRKRKAAAETESNRLFSSKGNQVSQSNKQETVPNFP
FSQEDCKQILQMLNKNKSSFANQVSNPPSHEELSGKAFSFSCKGTKSIWILDSGATDHIVCSPSLLTHSRAVENHTVELP
NGSVAKVTHVGQVVFSHNLILENVLCVPFFRLNLISISKLAYDSLYVTIFFTQFCVIQDLRSGKMIGTGTERDGLYYLDP
SKKGTCNNIQTVSPKLWHQRLGHPSHKATSLLPLFNNKACDLEKCLICPLAKQTRSPFPLSSISTKSCFELLHIDIWGGY
QVASISGAKYFLTIVDDYTRSTWVYLMKHKSDTKDILVGFIQMIETQFNTRVQIIRSDNGPEFKLEQFYALKGIIHQSSC
VNTPQQNGVAERKHRHLLNVARALLFQACLPKRFWGDAILTSAYLINRTPTPLLQGKTPYEKLFHKAPNYSHLKVFGSLC
FASTHAQRPSKFDPRAIQCIFLGYPYGQKGYKLFDIKHNKTFVSRDVVFFEDHFPFQNRTTSAAPSPSNITPSPITFDLT
SPIESHSSLAPEEINITSPTLADITPLSSPLPTTTPPPDTLSTPSHTLHSSPPPTTPSPDQPPPLRRSTRPTKTSTFLQD
FHVEVALPSRVAPTSSTSMVQSSGTSHPISRYLSYDHVSPTHKTFLTTLTIIKEPTSFSQAVQDPKWRDAMQKEIVALHD
NRTWTLVPLPPHKHPIGCKWIYKVKLKPDGSVERYKARLVAKGYSQIEGLDYRETFAPVAKLTTVRVLLSIASIRGWHLH
QLDVNNAFLHGDLYEEVYMSLPPGFGRKGETRVCKLHKSIYGLKQASRQWFIKLSSALKTAGFHQSWSDYSLFVRNRQGS
FMALLVYVDDVILAGNNLREIEETKLFLSQHFKLKDLGKLKYFLGIEVARSKQGIALCQRKYALEILEDAGFLGAKPSRL
PMEPNLSLTQTDGTLLHDPSSYRRLVGRLIYLTITRPDLTYVVNMLSQFMDKPRQPHLEAVHKVLRYIKQSPGQGILLPS
TGSLQLQAFCDADWARCKDTRRSITGYCIFLGQAPISWKTKKQSTISRSSAEAEYRSMATTCCEVIWLRNILKDLQVNHA
QPVTMFCDNQAAMHIASNPVFHERTKHIEIDCHLVREKIQTGMVQTAYIRTSNQPADLFTKPLSSAQFEVLISKLGVIDI
HTPT
>Copia-88_GM#LTR/Copia 85-4431 77.9% sim to SHACOP2_MT, SW:4004, [Glycine max]
MASASQGFSSHSFPTTIAEKLDDSNYLHWRQHVEPVIKSHKLQRFVVNPVIPPQFLTEDDRIMDRVNPEYEAWEVQDQTL
LVWLQSTLSKSVLSRVLGSNHSYQVWEKIHEHFSLHTKSRARQLRTAMRAVSLEGKTMDEYLHKIKGYVDELAGVGVPVR
HEEHVDAILEGLPSDYAPVVSVIESKKRTPSIAEIEALLYGHETRLVRYNRDTQMLASPSLNYTQGYSYGSSYKGNDSGG
SRGGYGRSNGGRNTSFDRGGGGRFANFQCQICLKYGHTANVCHFRSDMNFQPHESLTFVDPTTLQPIPYSIASGRTSNTW
VNPNSKPVTQSSSQPSVMLTNSTPQGNGQASSTWIPDSGASFHVTGESQHIKQLSHFDGPDQIFIGNGEGLSISNTGSSS
FLSPNDSHITFKLNKLLHVPSISKNLLSVSQFAKDNVVFFEFHPHLCLVKSQGTNKVLLQGAVGADGLYSFHNIKLQDHR
PQLLSTTSSTANKESTVTSSSGFSSPSTVNLWHARLGHPNSHVLKLVLDQCNISSSNKVISDFCASCCVGKSHRLSSHAS
TSVYSPLELVFTDLWGPSHLTSYSGFKYYVSFIDAFSRYTWIFPIKTKAETASVFQTFKLSVELQLNTKIKSVQSDWGGE
YRPFSALLASYGISHRLICPHTHHQNGVVERKHRHIVDLGLTLLHHATLPLQFWDYAFVTAVYLINRLPTASLNFAIPFV
TLFNKEPDFHFLKTFGCACFPLLKPYHTHKLDFRSQECVFLGYSSSHKGYKCLSSTGRIYISKDVLFNELRFPYLDLFSS
SSSSTQNITSYFSLNPDLSPPVSASTPSLSQIPSSNSLSAPSVPPGFSATALNQTSSESTSPHPQSSNIVSSSESIPTAP
SPTHPQSSNTMSHSESVSASTLIPINTHPMQTRSKSGIHNPRLHPSLFLTHSEPKSVKQALESSEWFAAMQEEYNALMRN
RTWDLVPLPAGRQAIGCKWVFRIKENADGSINRYKARLVAKGFHQVHGFDFHETFSPVVKPVTIRVVLTLALSQGWDLFQ
LDVNNAFLNGLLEETVYMTQPAGFEVEGKSLVCKLNKALYGLKQAPRQWFDRLRSTLIQIGFVGSKCDPSLFIYTHQQHT
VYILVYVDDIIITGSSNSLIQQLTSRLNTAFSLKQLGHLDYFLGLEIKYLPNRSILMSQSKYVRDLLHKTQMAEAHSIST
PMVTNCKLSKHGADLFHDPTLYRSVVGALQYATLTRPEISYAVNKVCQYMANPLDSHWAVVKRILRYLKGTIFHGLFLQP
ASVSKPMALYAFCDADWASDIDDRRSTSGAAIFLGSNLISWWSRKQKVTARSSTEAEYRSLAQTSTELTWIRTLLTELHV
SFQTPMIYCDNQSAVSIAHNPVFHSRTKHMEIDVFFVREQVLAKQLSVVHLPALDQWADVLTKPLSSTRFEVLRDKLNVK
HFSVEKPSP
>Copia-91_ST#LTR/Copia 78-4390 via tfasty with Copia-90_VVi, 74.5% SW:3692, 1 frameshift. [Solanum tuberosum]
MAPSTNTLSTSSLHHLISSCSIKLKPTNYLIWRTQMSQLIQVMRLTYLITEPPKGTCSTGQTTEKAVAGEKGAEDSNIVD
DWEEKDVLLRSWISGTLTEESMYLIVGCSTAKEMWECLEEAYLQATKDKEFQLKQQLQSVKLGTKTIDEYIKEFKGICDG
LAAIHKPVDEDSKVINFARGLGLKYKTFRTVMLGKAPYPTLNQFVNALRGFDMREDEEEVPQQNHNMAFSAQRGRGRGNY
SQRRGNNNFNSRGRGFKPAGQGTCSYNSRNGPGPQNSPSSGSHERNNTDACQICGRNNHTALKCFYRWDYSYQAADELPQ
ALAATNLQNTTDDTLYVDSGASSHMTHNSGILTDLKHYNGPDKIIIGNGSKLDITHVGNISGSGLKLKEVLVVPKINKNL
LSVSKLAKDNCCTLEFDETNFVVKDKKTRTLLAKGTKRNGLYALEDNNLYALTAAHDWNTSDNMWHTRLGHPSLKSLKVL
NSNSCINISSWNKMPTVCSSCQLGKSCKLPFGLRNKIEKEPLLKIHCDLWGPAPVESSQHMKYYVVFVDDHTRYTWIYPL
KKKSEFFEVFLKFQKMVEKQFSKEIKIFQCDGGGEFIQTDFIKHLEDCGIVRHISCPNTPEQNGVAERKHRHIVETGLTL
LLHANLPLFLWVEAFLTAVFLINRLPSSVLKMVTPFVKLYGEQPDYNSLKVFGCRCFPYIKGSNKFSPKTYPCVFIGYNS
LHKGYRCYHPPTRRVYISRHVVFDENTLPYVSPKQSQTNIDVSPHLATFVESFSKLQAHDNSDSGEVQAASPHVTGDNAA
TTHILLDDESTIDLSGAGSDAEEQVEGDDPYSSIETPAADFGSASGSEEHVALTGPANEHHQTTTLVDVPVDHQSDNATL
QSTTLVDVPVEVLPAPQGHHMITRHKAKDTPLVTCCSQQHRILREPNTTKEALRSPHWLAAMQEEIDALHTNKTWILVPK
SPGINLVGSKWVFKTKLKADGTVDRYKARLVARGFSQLEGIDFEETFSPVVKATTIRVVLSIAVSSKWEVRQLDVKNAFL
HGFLQEEVYMSQPPGFIDPQYPQHVCLLKKALYGLKQAPRAWFDRFSMHLLHLGFICSKADPSLFTLQTHKGKIFLLLYV
DDIIVTGSNPSHVSELVLQLGKEFAMKDLGPLHFFLGVEVKYFEGGIHLSQSKYAAELLDKTEMTLAKAVATPLAQKHGL
HEAVGSLVDASLYRMIVGSLQYLTLTRPDITHAVNLASQFMQSPNTEHLQGVKRILRYIKGTLHFGLRIISQSPCRLYGY
SDADWGGCTTTRRSTTGYSIYLGANCISWTSKKQTTVARSSAEAEYRALASTAAEMTWIMYLLHDLGVFLRSVPTLYCDN
MSALYMTVNPVMHARTKHVEMDYHFVREKVARGQLLTQFVRSKDQLADIHTKALTKQVFSGFRSKLGVTVPPLTSLRG
>Copia-91_BRa#LTR/Copia 196-4218  [Brassica rapa]
MEAISKKFEVEKFDGKGDFGLWKYKMLCQLEIFGLGSVLKEKTPSTDVEGEEQKDEKPDPKEQDRELRTKNLISLCLSDL
ILRKVMQEPTALAMWKALEAEYQTKTLPNRIYMKQRYAGFRMEEHKSIEENMDVFLKLVADLASLDIKISEEDQAIQILT
SLPKQYESLVDALKYGSGKEILTVRDVTSSAYSKEVELREKGLLNKSKGNSEGLFAGDNRGRGEKKSDKTWRARSKSNNR
SKSRPKFSKECWTCGKEGHFKKQCPERKKPSNSVNIAEEKEEPLVLVASQQATKDEWVLDSGCTFHITPNKDVLFDLEDI
EGGKVLMGNNTISEIKGIGKIRIMNNDGSSVILSDVRYMPTMGRNLISYGLLEKMGCRYEGKDFMVQFYKGDKKVISGKY
CDGLYYLQGTVLDGEAAVARPDIDLTKRWHSRLGHMSLKGMNILVKDGYLNAKDVKTLEFCENCVLGKAHKLSFPKGKHT
TKEVLEYIHSDLWGSPSVVESLGGCFYFVTFIDDFSRKVWIYFLKSKNEVFQNFKEWKTCVETETGKKVKCLRTDNGLEF
CNTQMDTLCKEAGIKRHRTCVYTPQQNGVSERMNRTIMEKVRCMLTEAGLEQKFWAEAASTAVYLINRSPSTAINFKLPA
EVWSGTKTDLNHLRKFGCTAYVHVTQAKTSPRAMKGVFMGYPDGTKGYRVWLPEELRCTVSRNVIFNEEEMFKDIKGVSE
KKRKTKKVTFNPVLIQGPSNTTTDTETEDTVQGGVSPASENSEPESSSSESEEVVGTQQENLDNYILARDRIRREVKKPS
RFDDSDCVAYALATAEEINKDEPKSYLEARRSKSWKLWNEGMQEEMDSLEKNQTWKLVEKPEKKKIIGSKWVFKLKEGIP
GVEKPRYKARLVAKGFSQVEGIDYTEVFAPVVKHVSIRIMLSLVANYDLDLEQLDVKTAFLYGTLDEEIYMAQPEGFVEE
GKEDQVCLLLKSLYGLKQSPRQWNRRFDSFMKQQGFERSAYDPCVYMKGSDLSHMVYLLIYVDDMLIASKDSKEIKRIKD
SLKREFEMKDLGAASRILGMDIIRDRKKGTLKLSQGKYLQKVLETFNMAESKAVVTPIGPQFKLKSLTQKEEHEEARFMN
VIPYASAVGSLMYAMVGSRPDLCFAVGLISRYMSKPGRIHWEAVKWVMRYLKGALDSDLLFTKGEDFKVRGFCDADYATD
LDRRRSVTGYVFQVGGNTISWRSGLQHIVALSTTESEYMALAEAFKEALWLKGFVSELGFKQDDVRVFSDSQSAIHLAKN
GGFHERTKHIDTRLHFMRDVIEAGDVTVHKIHTSINPADFLTKCVPGQKFETCLEILKVLP
>Copia-85_VV#LTR/Copia 1439-5449  [Vitis vinifera]
MTVFDGSNFSEWYERVQFSLGVLDLDLALITDKPPEATDDSTPEQVEQSKAWAKSNRLSLMFMRMTIANNIKTSLPQTEF
ASEFLKSVEERFKRADKSLAGTLMAELTTMKYDGQKGIQQHILNMTEKAAKLKALGMGMDESFLVQFVLNSLPSQFAPFK
IHYNTNSDQWNLNELTSKCIQEEVRLRQEGHNLALAVTHGVTKKKGKFKKGKNFPPKKSGPGEGSQSHDGKFTVSCYFCG
KKGHVKKDCIKRKAWFEKRGINLSFVCYESNLAEVPSNTWWIDSGATTHVTNLMQGFLTTRKPKESEKFLYMGNRLKVEV
VAVGTYRLLLETGHRMDLLNTFYVPSISRNLVSLSKLDATGYSVLFSSGQLSLMLNSVTVGSGILCDGLYKISLNHEFAQ
ALITLHSNVGSKRGLINENSSILWHRRLGHISRERIERLVKEGILQNLDFTDFHVCVDCIKGKQTKHTKKGATRSNELLE
IIHTDICGPLSVPCFTGEKYFITFIDDLSRYGYVYLMHEKSQAIDIFEMFITEVERQLDKKIKIVRSDRGGEYYGRYDES
GQNPGPFAKFLEKRGIRAQYTMPGTPQQNGVAERRNRTLMEMVRSMMSYSSVPISLWGEALKTAMYILNRVPSKAVPKTP
FELWTGRKPSLRHIHIWGCPAEARIYNPHEKKLDSRTISGYFIGYPDKSKGYRFYCPNHSVRIVETGNARFLENGEISGS
NEPRKVDIEEIRVDIPPPFLPQEIIVPQPVQQVEDNEQHNRDGSLPPENIAIENAVEPPQPAPLRRSQRERRPAITDDYV
VYLQESDFDIGIRKDPVSFSQAMESDDSSKWMEAMNEELKSMAHNGVWDLIELPNSCKPVGCKWVFKTKRDAKGNIERFK
ARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNEHLVCK
LKKSIYGLKQASRQWYIKFNNTITSFGFKENIVDQCIYLKVSGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMV
DMGEANYVIGIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKGDKLSKMQCPRNNMEREQMKKIPYASAVG
SLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSEQLEVVGYSDSDYGGCLDSLKSTSG
FVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLRNFISGLGVVDSIAKPLRIYCDNTAAVFFSKNGKFSSG
SKHMDLKYLVVKERVQKQQVSIENIRTTLMVADPLTKGLPPKAYLEHVMRMGLLSNP
>Copia-74_BRa#LTR/Copia 284-4822  [Brassica rapa]
MATVQDSVADDENRPTSASLLDPNSNPLYVHTADHAGISLVSEKLAGLGNFNTWRRSMLMALGARNKSVFVDGSYPDIPV
DHPDYASWSRCNNIVCTWIVNAVDKSIAKSIMYLDTARQMWLDIHDQFKQSDGPRTAEIKQQIFAEIQGTQTVSEYYTRL
KQLWEELKNHESPYTCCCGRRDCASLKRILHREEQDRVLKFLTGLNDTFTATRGQILMLEPKPNLSKVFNLVSQEERQRS
MKSTSVVACQVTNSLPEEQMVAAYNAGYNKQRPRPICSHCGIAGHTMNRCYKLHGYPQGYKSQSQSYKSSTGVNSNAKPR
TENVANMLVSGTGGISFVDQQGVHLGSVTTDQVTKLLSVLNVNKGTSHDNVSQISGSTICLSDGTASTSKPQPHLIPQTL
SEHPPSGTIPFPNSHYVSAGIDNRLTFTQHDWIIDTGASCHVSFDLGLFEFTETITHTFVTLPDSTRIPVTVSGTIKLTK
TLTLTNVLYIPHFKFNLLSISALTRNSSISVLFSSDSCFIFPNNPFLLQGLTQDSMIGKGNLHNNLYVLEAFSPNTSTSA
SLSTQDSSIFQVSSDIWHQRLGHPSQSKIQALSKLLNISCKHTDQKNPCNICPLAKQKRLSFPSSPQLSKSPFDLIHLDI
WGPFSQPTHDGFKYFLTIVDDCTRVTWLYLLKDKSSVANIFPEFLQYIQTQYQTHVKAIRSDNAPELAFSSLLKEKGIEH
YFSCPYTPQQNSVVERKHQHILNVARALLFQSRVPLQYWGECVQTSVYLINRTPSPVLQNKSPFELLTKRVPSYDHLRAF
GCLCFSSTLLKDRNKFSPRAEQCVFLGYPHGYKGYKVLNIDTNKISITRNVLFHETVFPFHTISSVSSPLSPDFFDQHVL
PLPVPDSPFPAFFDLGSNVSSNIFPDNSSHDSSQNLSNNSSTSPSVILESSRTNTRSKRQTKTPAYLDEYHCYLLNQIPG
IPVHPTHTTSYPISAFLSYDKLDPSHRNFLLSITTTKPPKTFKEALLSDEFRTSMKSEMTSLEETGTWSICSLPPNKHPV
GCKWINTYKYHPDGTVERPKSRLVAKGYTQLEGLDYLDTFSPVAKLGTFRLLLALAAAKGWSISQLDISNAFLNGDLDEE
IYMRLPEGYEELTGKKCPPNSVCRLHKSLYGLKQASRQWNHKLSSVIFGVGFTQTHSDHSLFVRYVDKVFLAVLVYVDDI
LIVSNDETATIAFKDVLKAAFKLRDLGSAKYFLGFEIARTEKGISLNQRKYCLELLEEAGLLGCKPVSVPMEPNLKLAAA
TGEVLSDASIYRRLVGRLLYLTHTRPDITYAVHKLSQFMSAPTQDQLQAAYRVLRYLKNDPAQGLFYSASSVLKLTAYSD
ADWAACPDTRRSVTGYCMFLGDSLVSWRSKKQQTVSRSSSEAEYRAMADATCELIWLTNLLQELHCPPVAPATLFCDNQS
ALYIASNPVFHERTKHIENDCHIVRERLQSGFMKTLHVKSNLQLADIFTKPVQPGLFRSLLLKIGTHSLCLPS
>Copia-71_BRa#LTR/Copia 90-4370  [Brassica rapa]
MSTSQTSSHETIMVSDSQKILSINMTNVTKLTASNFLMWSRQVQALLDGYDLSGYLDGSTIIPPPTITTDGVVTANPAHQ
VWKRQDKLIYSSLLGAITVAIQPILATTTTSAQIWETLSATYAKPSRGHIQQLRQQIKTWSKGTMSIDVYFQGFKTRFDQ
VAILGKPYDIEDQIEFILDGLPDEYKPLKDQLEGREYPPSLTEIHEKLLNHENKLLAKHATPAIIPVTANLANHRGSYNN
NNYSQRQNQGSSRPSNNRSQQTWQQQQFSPRNDTAPRGYQGRCQLCGVHGHSARKCSQLQSAAASYNSNSRSQSPSPTSW
QPRANMVTAQAYNPGNWILDSGATHHLTTDLSNLALHQPYTGGEDVTIADGSGLPISHTGSTTLNSSHHSFHLNNILYVP
NLQRNLISVYRLCNSNNVSVEFFPAHFQVKDLSTGVRLLQGKTKDELYEWPVTSSNTISLFASPTPKTTLSSWHSRLGHP
SLPVLQTVISKFLLPISSSSQKETPCSHCFSNKSHKLPFHTNTITSSQPLEYLYTDVWTSPVLSIDNFKYYLIFVDHFTR
YTWFYPLKQKSQVKETFIHFKALVEKHFDKPIKNLYSDNGGEYVALRAFLSASGISHFTSPPHTPEHNGIAERKHRHIVE
TGLTLLHQAQLPTTYWTYSFAAAVYLINRLPSPVLAHQSPYLKLFNKPPNYLKLRVFGCLCFPWLRPYAQHKLDSRSLSC
IFLGYSLTQSAYLCLHLPTGRLYTSRHVQFIETQFPYPTQPAPSQDAEEVQPPVFAPPTHIPLSPTLVQPVSSPPPCQDS
HQNVSNTTTPSVGTGTNSTGTLVGSVQVHEQSPTPASSSSSPMQSQNLPEPTPQPEPHPTPPSPILTPPPPSPQPDPTPS
PPPVNNVHPMRTRAKNNIIKPAQKFSLTVTSKPISPIPISIAQAMRDPNWRNSMGDEYNAQIRNNTFELVPPKPNQNVIA
TKWIHTIKYLPNGSLDRYKSRWVARGDKQEYGVDYAETFSPVVKTLTIRLVLQVAVSRSWPIKQLDVNNAFLQGTLTDEV
YVSQPPGFVDPDRPRHVCLLKKALYGLKQAPRAWYLELRNYLLHMGCTNSVADTSVFIYIHGDHIVYILVYVDDIIVTGS
SSNLVQGVIYVLSSRFSLKAPTDLSYFLGVEATRTATGLHLMQRKYIIDLLTKTKMLDSKPVSTPLPVSPKLTLQSGHPI
DDPRQYRMVVGSLQYLSITRPDIAYTVNRLSQFMHRPTDEHWNAAKRVLRYLAGTLSHGIMLRRNTPLSLHGYSDADWAG
DQDDFISTTAFILYLGATPIAWSSKKQSGVARSSTEAEYRAVATTAAEMKWVRSLLTELGIMLKSPPVIFCDNVGATYLS
ANPVFHSRMKHLALDFHFVRENVQTGALRVTHVSTKDQLADALTKPLPRPRFTELINKIGVVSLSPS
>Copia-75_MLP#LTR/Copia 69-4520  [Melampsora larici-populina]
MSSSPIDAGSPSDSSLTNDSNNVSNVSSPASSLSSNSSSRTVHPPSASTQDSIIDESSPIMATXTNFADDKIKIPQLTDG
QFPHWNKRLHFALQTRGLLSFLTNDTPPTEPAELLLYRRQQGRVMELIVNSLDAANDALVQITDTPKKAYETLSKAHGSS
GGVLAAAAICEIATARLEPGQSLADFITRIRKLHNQLAQYAAEDKDIALSSKLLAIFLLNGLGKDFDFITAPFFADLSKL
TVQSVMDRLVLETAKQSSSGTISSSVSAFNVKVATPSSASANTRGGRKIGPGPNDLCNLENHRGLPHTNRNCHAQNGQKR
AKSGVSSGLSDSEMAKRYLAIEAAHSAKKNASAAAAFNVTTSNQFSALELADDFPDEGFAAHAYMAADTISSFGTILADT
AASRNIVSDRRLFSQLKPIAPVKVTGISNTPQYATHLGTIVIPGFSEVNHRELDILIPEVLYVPTMTVNLLSLSQLCANG
ASFTGSEDSLTVTGLSGGAYFVCMKTNDDKLWESKVRISPTVYAYSASTERWHHRLGHLHYDAIQRLAAKGDITISSKSP
CFTCQRAKISRLPFKSHFPVSTIVLNRIHSDVMGPFPTSLGGAKYLLSFIDDCSRFATIFPIKAKSDVFNCFVKYKTYVE
VLFGCKIKILHSDRGGEYQSNTFLNYLSANGIALEQGPAETPEQNSVSERYNRSLIERVRCNLHHAKLPTNLWAEIALAT
TYTLNHSPHSFLNYDTPLRKWNSFIPGQGSHGPDPAFLRTLGCLAIYLAPRTSGKLGLKGRDGVLIGYESGAKAYRVLDL
TDRKIIITRSVIFNEDSFPFASLPSQSESPSFVIVQDTGMDIPLTSASIPPSNSQSSSSPSSIPLSASVSNPPILSTPDR
VSSFKNVQDDLSNSPISPAVLKTLVLPSIHSSTSHQSPTRRSTTSTTSESINRNDRPVRNTSKPQRLGNFIGHVGIDAND
EPTYKQAMEAPDADEWKKAMKVEFDSLTRHRVGKLVARPEGARVIGGMWVLKKKRDEKGVVLKYKARWVCFGNRQIEGVD
YHDTYSAVGKTDTLRLMVALAAYMRLSVVQFDIMTAFLHGIMKEQVYIQQVKGFVEPGCEGMVWQLGKSLYGTXQGARDF
SDDLRGKLLSFGFKTSKADSCLFIFRRGKHFIHLHMHVDDGFIISNSDHLVEEFRTHLLKSYELKWKPKPTLHLGMRIQY
LDDGAMSLDQSHYLQEMIDKFGMDNLNPVKIPFPIGLKLKLGSAEEVASASYLPFQSLIGSLNWAAVSTRPDIAYAVSQL
SRFNSCYTFEHWNAAKHVVRYIRGTLNKGILFKGSFPADLKGFGDADYANDLLDRRSVTGYLFTFGGAVISWRSRRQKST
ALSTTEAEYMALSDCARHAIWFKTLXRELNLPVSAVPILSVGDAIQLFNDNRGTVLLSKEPVINDRSKHIDVRYHFIRDH
VKLKSIVTNHVPTTEMPADILTKPLSIDAFERCCKQVANVECSS
>Copia-77_SB#LTR/Copia 2969-7580 via tfasty with Copia-60_SB, 1 frameshift. [Sorghum bicolor]
MRGHPPLWVCGVFALQYLSTWYLRPGQFRVRVPVFRCPLLHGAADLARRALPARSGCNLHLFATAPSVAMSTDSSSASST
SSMAGSPSMPALRDAPAPAIFSYATINVKSHVPLVLDLKLPNFTKWSAFFTAMCGKFGLLGHIDGSIPPRPTDRNWSQPD
ACVRSWIYGCVDDSVLDLAMEPDQTARALYVAITALFQANQATRAVVLGQEFHTMVQGDLTIDAYAQKMKQTADALRDVG
QAVSEPQLVLNLLRGLNPRFANSADIIANSAVLPSFTSAHNTLRLKEIRLASDAKVSSDTALTAVDTSVPVPSPCSSSSC
RSTPAQPYRGGSNGGGGKGKGKGKGKGNGGGGRFQQQSAPSQTSSGGRPGVPPAGPWFCMNPWASMPPQQPQWQHQPQWR
PPLAPLPQAHTAFAPPSMTGSWDQGALIASLNQMALQGGAGPSPWVLDTGATSHMAASVGILLSRLPHSQSFITVGNGAS
IPVSSRGTSIIPIADHLFKLNNVLVAPHLVRNLLLVRQFTRDNNCSIEFDAYGFCVKDLQTGNVILRCNNGGDLYTLSSS
SPPAATCHVAVPSSLWHSRLGHPAPAALARLNKISAISCNNLDRAVCHACQLGKHARLPFTSSSSRSSVPFALVHCDVWT
SPVLSVSGFKYYLVLVDDYSHYCWSFPLRHKSDVHTQLVNFVSYAHTQFNLSVKCFQADNGTESINNTTSTFLSSRGILL
RTSCPYTSAQNGKAERMLRTLNNIARTLLLHAAMPPQYWAEALATAVYLLNRRPSSSILNDIPHHLLFHKMPDFSSLRVF
GSLCYPNLSATTPHKLAPRSSACVFIGYPSSQKGYRCLDLSTRKVIVSRHVVFNESYFPFAAAKPPTESLDFLLQDRLPA
PPPTPLVPASHSSPRVVHDDSLEQDPAILWLGPVLQTPGASTAAAAQRQPPAAAGPLLRPAGGPAGVLGARPPITQVYSR
RLPAPLPSTASDAAPEPTRSSSAEVSAPVSPPEDVISRPVTRQQTETLPPPVQRLGFSATIASPLPANYRSALADPNWRA
AMVDEYTALIDNGTWRLVPRPPGANIVPGKWIFKHKHHSDGSLARHKARWVVRGFSQRYGIDYDETFSPVVKLATIRVVL
SSRSWPIHQLDVENAFLRGHLNETVYCQQPPGFVDPTAPDHVCLLQKSLYGLKQAPRAWHQRFASFIRTLGFDTSVSDSS
LFVYKDCSNTAYLLLYVDDIVLTASSPALLRRILERLHSEFAMTDLGELHHFLGISVTRSASGLFLSQRQYAADLLQRAG
MSECHPTATPVDARMKLSATDGSPVADPTQYRSLAGALQYLTLTRPDLAYAVQQVCLFMHDPREPHLAFLKRILRYVKGT
QSAGLSISAGPIDSLTAYSDADWAGCPDSRRLTSGYCVYLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAVAETCWLRQL
LQELHTPLPSATIVYCDNVSAVYMTGNPVHHRRTKHIEIDIHFVRDKVALGQVRVLHVPSSHQFADIMTKGLPVQLFTDF
RSSLCVRDSPAMTKGGY
>Copia-75_PT#LTR/Copia 350-4735 via tfasty with Copia49-PTR, 86.5% SW:5113, 2 frameshifts and 3 stopcodons. [Populus trichocarpa]
MMNDKTTESTPIIHVQTENSGFTTSVILTETNYDVWSQIMEMQIAGREKLEYIMGKTQPPQDTDAGYSRWFAENQKVKGW
LLTSMSPDIMKRYIRLRTAREIWNALSKAFYDGSDESQLFSLNQKAFSTKxMGRPLSTYYGDLMEIFQELDHRDRTKMKD
PDDVITYRRSVERLRVHVFLNGLDAEFEQIQGEILRKDPVLDLEEAHTYVRRDVVRRATLNNEAGAGHAESSAMMARxGK
PRIYRSNGPTIEKIQTSETQNSSYEIGKAKSEYVCTHFGETGHTKMKCYELIGYPEWWDPAKAPRKRNSKPNTHALVAVA
EHPSIKTMTSLTTKEESVAGHQLPSTHTKEESGKVYHTSTLSSRNEWIIDSGATDHMTFDKLWLQSFKPSEQYIISSANG
TSSSVNGEGSVILTENISLDSVLVVPTLNYNLLSVAQITLALQCIVIFWPNLCVFKDIQTRKTIGYGTRRGKLYYLDLTP
ASCHQLAQAFSMNKSTANSESAANSEIWLWHKRLGHSSFGYLKKLMPKLFVQLPDSEFKCDVCELAKSHRVPFQNSMNKS
PAPFMVVHSDVWGPANTCSLNGKRWFISFIDDHTCMTWICLMKCKSEVSSLFKQFHNMVATQYSSAIQVLRSDNGGEFVN
QELKQYLINHGIVHQTTCLYTPQQNGVAERKNRQLLEVVRASLFEAHMSTKYWGEAITAATYLINRIPSSTLGFQTPLSV
LHKTICSPAVSHLQLRVFGCTAFVHLHKPLRNKLEPRALKCIFVGYAQHQKGYRCYHPPTQKLYVTLDVVFHENIMYYSA
PESSSQEHNKGNWQTCYDDLYVTRDKHCSNTSSHTMQDGNSEEYIEAEPxQDTGSEENQIEVLQQETQVPQLPASTLQLC
PEFESVTEPQVSSETQLKILPHRTTRGKPKTAYEPLLTSKLNYPMSNFVSYHKLSKENETFMNQISAISIPNSVQEAITD
SRWKEAMNEEMRSLQKNCTWEVVELPAGKVPVGCRWVFTIKHKANGTIERFKARLVAKGYTQTYGIDYMETFAPVAKINT
VRILLSLAVNLDWPLYHLDVKNAFLHVDLQEEVYMELPPGCIMQIKGSTKVCRLKKSLYGLKQSPRAWFGRFTNFMKSIG
YKQSNSDHTLFLKTKKGEVTALIVYVDDMIVTGNNPGEQKALQNCLAQEFEMKSLGHLKYFLGIEVSRSKEGIFLSQRKY
ALDLLKETGMTACSPASTPIEENLKLSIHPQQIHTNKERYQRLVGRLMYLAHTRPDLAYALSVISQFMHSPSEEHMKAVT
RILRYLKSSPGKGILFKKGDNLKIDGYTDADWAGSIQDRRSTSGYFTFVGGNLVTWRSKKQEVVARSSAEAEYRGMAKAI
CELLWKKNLMQELQVEQTSPMRLYCDSKAACDIAHNPVQHDRTKHVEVDRHFIKEKLEAKIIEVPHIRSQDQLADVLTKA
VSSQVFHTSLDKLGMNDIYAPI
>Copia-44_SB#LTR/Copia 64-4387 via tfasty with OSCopia1, 1 frameshift. [Sorghum bicolor]
MNSPHGSHSSNPFAGSDEPVPPSASTLVLLNIHNHVPVTLSTADDNFRQWRSFIELTIKKFGLLNHIDATVEPPPCSMIP
SGSSLQIDACIVSWLYSTVSKEIWNDVYRPNNTALAAWTAITGQFLDNSLQQAVYLQQEFHSLFQGDLSVGEYCGRLKRL
ADSLYDCGAAVSDQALVINTLRGLNNKFSQAIAVLSTMTPPPSFLYTKSYLLQEETRIKHSHQMEAQTALLAAGSAAGQP
VSSNAGTKSTPAPPTLPPAPAVQSGSGGDRRKKRKADNRNRQGASSTPAASAAPPPPQWTSPYNPWQGVVQAWPLNSWRP
GVLAPRPIAAPPSAMAALAAQQDPGTIPPGLYTALNGMSLNTPSGGGSSDWFLDTGATSHMASHPGILSSRPVPTVPRHI
VVGNGTQLTASCTGTSVIPTSSSSLRLHNILIAPHLVKNFISVRALTRDNSVSVEFDPWGFTIKDLRTKMAILRCDSSGE
LYPLRTSPGTSSSTSVQALLSSTAADLWHARLGHPGRDALQHLSRSIGFTCTKSSPHTCHACKIGKHVRLPFHESNNVAS
FPFQLLHCDVWTSPIISNSGYKYYLVIVDDLSHFVWTFPLRHKSDVLPTIISFHAFVQTQFQCPIVSIQTDNGKEFDNSA
ARVFYAKHGILLRLTCPYTSQQNGRAERALRTINDGVRALLFQAALPCSFWPDALAASTYLLNRRPCRPCGNATPYSLLF
GVEPDYSNLRVFGCLCYPNTAATAPHKLAPRSARCVFLGYPMDQRGYKCYNPETKRIIISRHVYFDETCFPFAQIPTAGP
KATPRAAPSGSDVLPLPVVHRPRHRQGRAPPVAAPRTQSVATPSVASPHVAATPTMPAPHMSMGSQPPETPSTSAASPST
SQPASTPTTSAPPHPVPQHPMITRGRDGIRMPNPKYAHVATTSSPTAPPTSVRAALRDPEWTAAMQEEFRALQANGTWTL
VPRPPKANVITGKWLFKNKLHPDGTLERRKARWVVRGFSQRPGVDFHQTFSPVVKPSTIRTVLHLAATRQWPVHQLDVKN
AFLHGDLAERVYCHQPAGFVDELHPQHVCLLVKSLYGLKQAPRAWFLRLGNYLRSIGFTSTGSDTSLFVYKHGDAMAYLL
VYVDDIILTASSTALLQRIVQSLCREFAIKDLGNLRFFLGVQVRRDAAGFSLSQAQYTEDILERAGMANCKPASTPVDAK
QKLSATDGEPATDATFYRSITGALQYLTLTRPDIAYAVNQACLYMHSPSAAHWSLVKRILRYLRGSISDGLFISASPSNE
LQAYSDADWAGCPDTRRSTSGYCIFLGNTLVSWSSKRQPTVSRSSAEAEYRAVANAAAECCWLRNLLQELHVHVGKATVI
YCDNISAVYLSQNPVHHRRTKHVELDIHFVRERVALGQFRVLQIPTRHQLADIMTKGLPTPLFTEFKSSLCIRTTDAQTA
G
>Copia-42_Pru#LTR/Copia 270-4788 via tfasty with Copia-59_PT, 85.2% SW:5318, 2 frameshifts. [Prunus persica]
MVTAAQLQILQSPITALISTISTSVNVKLDDSNYLNWHFQMQLLLESNGIIGFVDGSHPCPPTIASGASGINSSDSSSAA
DCDTVLIWKMHDRAVMQLLTATLSPVAMSCAIGSTSSRDLWIRLKEHFSTVSRTSIFQMKSNLQNIRKGSDAISQYLLKI
KEARDYLAAAGVYFADEDIVILALNGLPPEYNTFRCVVRGRESVITLKEFRSQLLAEERIVENLTVAPSYLTAMAATSRP
PISSAPPFQQSNGAHGQSSYVPGGYKIFHRNKGKGKFNQGQRPFNPRPQFYTQTHVLPTPTPGVLGQFPTSQYPSPSVPL
VPTCQLCNSEGHTAPFCGSNPPERSKCHICGKTNHTTWYCFYNDNGPNFIGAGSYSQVPQMSSSSLGYSSAQSHHSQQSP
MQAMHTVMQPSPPSSSQSLPQVWLTDSGATNHMTADLSTLSLATPYPTNETVQTANGEGLSVSYVGNSVIPTSVKPIHLN
SVLYVPKLTQNLLSVHRLCLDNNCWLIFDAFCFWIQDKATGRILYKGLCSNGLYPISLASSHSVLPTTKPQPRAYLGQLV
FSSTWHHRLGHPTNKIVTLMLQKAHVQCNSVSSAVMCHSCLQGKFCKLPFSHSVHRSVTPFHIIHSDLWGPSPCVSVDGY
RYYVIFVDECTRHCWLFPLINKSDLYSVFVSFYNYVQTQFSASIQILQSDGGGEYVSKQFQAFLADKGIIHQKSCPYTPE
QNGLAERKHRHLIETTITLLQHANLPSSFWTYAVQTASYLINRMPTSILLDKSPFEVLFGDIPAISHLRIFGCACYPLLK
PYLTNKLQPKTIKCVFLGYSSQYKGYICYDVSGKRTYISRHVIFDEHAFPYADLVTHSKVFIPSPPLPSASSPFPVVTNN
NIVVLPTSSATLSDTFILPSNTPASSSSPSPLSITGASPSLSSIPVVPESNAEALSTGPLPLVDSFQPDSMQVVLAVPPM
NLHPMQTRSKSGIVKKKVFLTTLQESGGVDLSLVEPATYKTALKVPVWLTAMKEEVDALHSQGTWSLVPLPHNKNLVGCK
WIFKIKKHADGSIARHKARLVAKGFSQEPGQDYGETFSPVVKPTTVRIVLALAAHFGWQLRQLDVKNAFLHGILQEEVYM
AQPPGFEDSHHPTLVCKLLKSLYGLKQAPRAWNDRFTSFLPTLGFQHTYSDSSLFVKQVDSGIVILLVYVDDIIITGSAV
SEIHKVIQSLTVEFEIKDLGDLHYFLGLQISPTNTGLFLSQSKYVQDLLVKTEMTEAKACDTPCLPYHRLLKDDGHPYGN
PTLYRSIVGALQYLTFTRPDIAFSVHQVCQFMQNPMVTHFTAVKRILRYLKGTMHFGIRYNRGSLLLTAFSDADWAGDPN
DRRSTTGLVVFLGSNPVSWSSKKQQTVSRSSTEAEYRALSTTSAELDWIKQLLVFLQVPIAQQPVLFCDNLSAIALSFNP
VQHQRTKHIEIDVHFVRERVAKQQLFVQFVSSREQFADILTKGLSAPLFHTHCHNLMLGLSPQEIEG
>Copia-45_BG#LTR/Copia 348-5445 via tfasty with Gypsy-26_BG, 60.9% SW:2453, 7 frameshifts and 5 stopcodons. [Blumeria graminis]
MPSSSNRASDTGDSSTSPRKMEYTREELMEGIRVNKSEWNVIEPDLWHSPISPTSNATHLTTFVARAIQNYDFEQLYDDD
VFYAFREEFETWNKDMFDTVYMPFRRELKIFLRFHGVYTGRNNGRIGQQLAHMIQLEEAPEWNEDELRTAKFDTQSRAFE
KQQALLRSSPKMSEKKREPNEQDPQSDKPILPVKQQPPPSPHVQPENKQDNVHQPMNWPIGSSEPPLPPREGTTLPSQTT
PFPPPPPQQSWSRAPYAPYPVQMQYMPQPNLPSYDPYSTLPPRPVPNARLDPNISSQFVKTFDRKKKYTGEPYDLLEDKL
RMFFNICYHAEIRPEQFHAVFPRILTGRAEAYYLHYINRDDTFAAAYEKIKTHFDTEVNHHYYYTDWTSTTFNKMRQEST
EKNMHKVLQTLLDKLQLCQRALGPDYAGEADLRTAVIKACRGVPELEHALFKPAKLCEELFSDMRSSIETHMSRVSTQQM
IMDDAEDGQYYLDRRYNNSRRGRGNFRGGSRRDDPREQSRGGRRDVRPRDWKKKCFVCHKEGCWSTKHTDEERRKSRNAY
VAHCNFTGTTIDDFATYLTDYEGHEMNQQLPQDEKSDDDEEYDESDTFLVETCQYLTNQAFLHQLTGEDVFRTNNSDVPA
TQFMIQDRYSKTRFQGILPDTGAARVSTAGKEQYLALQREDPSVQMDESTAGQASIRFGKGSTTTSIGTVTIETPIGTTK
FHVLDTPTPFLLCLADMDRLGVYFNNTTDELVRGKKTIPVIRKWGHPWFFLSKTENAGVFLSEIELRRLHRRFGHPATNR
LYQLLEKAGHDDVDKGTLEMIAKSCHHCQMHSTAPRRFKFTLKDDHEFNYEILVDVMYLNNRPVLHVVDSATAFQAARFL
PSMSAKDTWEALRSLWIDTYQGPPDIITHDAGTNFASTEFHNEAKVLGISCKQVPVEAHWSIGKLERYHSPLRRAFEILF
TELGSSTTVEAILQMAVKAVNDTAGPDGLVPTLLVFGAYPRMTxRLAALAIDSKASDAIQKAMKALRKVQAERQVNDALN
TRNGPSTDDVLALPLQSEVRVWREKDGWQGPFKIAATDGHNVTLDMVNGPATFRSTVVKPYYRGAATDPIPTPPNHLTKM
VRPSSGQRQHDPQTEQPRPRRRGRPPGAKNKPKSTSGCLHNQEREVNDASLALKLRKDGVITAPGAPFEESDAKEIDDLI
GRGVFRFELYDPVKHAGHSMFKSRMVREIKGKNEKPHEKSRLVIQGYSDSEKETILTQSPTIQRASQRLILAIAPSLGEK
GHHTHSPRHHAGIPTGPDRPFPRSTGRPARxVGEEVPREHDHTRHxATLRNSxSWSPLVCDVPGTPHERAGHEDVNVRPL
PVDHQPRPNDIWYGRNADxRHSDLGPAAFSENEEEEIQKARFRAKPKTHLSPDTPLDFNGAKLTPEDDNVLLKQKGQGKA
KIDLIDTSAADRAQRYAEQRARGAYLASICQPEASFDLSVAAQAQNPDEAECEKLNNRLKWQMGNIQRGLRYVPFDLATA
KLMVFADGSFANNKDLSSQIGFVIMLANETARTDDQFDIRGNIIHWSSTKCKRVTRSVLASEIYGMVNGFDVGLSIATTV
SMITDRLGLPAIPLVVCTDSFSLYECLVKLGTTKEKRLMIDIMALRQSYESREIAEIRWINGKDNPSDAMTKASPNRALE
RFVDDNELTIRMEGFVQRTME
>Copia-47_ST#LTR/Copia 102-4782 via tfasty with Copia-31_ST, 87.0% SW:5620, 1 frameshift. [Solanum tuberosum]
MVNESEAPATVGTSVVVEPDTLALVESRRNHPLYLHPSDTPGCVLTTVQLTGAENYALWSRSMVINLREKSKLGFVLGTC
RRTDYAPELEEQWERCNAFVLAWIMNTVSKELLSGIVYASDAETVWADLKERFDKVDGSRIYQLHREICTIHQGNSNVSA
YFTKIRLMWDEFDVLVPPPSCSCDKSRVYVDHMRYLRLFAFLMGLNEVYSHARSQILMMNPLPSVSKAYAMILADESQKS
TSEMHTGNHMGEATALYAGRGNFNSRNTRNDGNRGELNTGRGGYYAKKKVNWNLFCDHCKMHGHTRDICFKLIGYPDDWK
FKKKSGHEEYGATNLGRGMNGNKEKSIANNVQIENGAEDLKHDAFGDKSVGSSGMQSSNSLRSVRTNLQALAMRQSYTPT
QYQKIMQLLAEEEEEYAEVANMAGNPNSNDLVVFSISAGEDGYMDIVNSNVEQNRISNSNKSNAEQNRISNSNKWIVDSG
ATCHMTSKIEMLDSVSNSNKNVGRKVYLPNGQTTSVTHSGNCKISADDVLENVLVVPNFKYNLLSVSKLTRQLNCSVHFF
PECCIFQDLFNGEVKGIGKEKNGLYYFPSNFSYAKIAANTDKILMTKTGDSECMLWHNRMGHPSFKTLKLLCLVNQDTTI
CDNCSVCPLAKQTRIPFPISTSRTENVFDLVHLDVWGPYRTPTHNGFRYFLTIVDDHSRMVWLYMLRFKSDVFGVLKSFL
ALVKNQFNRQVKKVRSDNGTEFFNKDCCTLFTSFGIIHESSCPHTPQQNGVVERKHRHILEVARALRFQGSIPIKYWGEC
VLAAVYLINRMPTEVLHKQSPYEVFHQAKPHLHHLRTIGCLCYATKLVKNDKFNPRADACVMMGYSVTQKGYILYNLSMK
KFIISRDVVFKESIFPFSNLKDQYMPIFASQQLPFDDIEKHDTFRAAVQDPVLCDPNQLRNDPPQQDNSKSDVVPDDDDD
AEINPQLSPEVMPDVGPRTSTRSSHPPVWLKDYVTQVIDSSHPYSLANYVTYSHLSPSYQAYLSEMSTETEPRSYEEAVK
DGRWVQAMRQEINALEDNGTWTVMQLPPGKKAIGCKWVFKIKYKANGEVDRFKARLVAKGYSQTEGIDYYETFSPVVKMV
TVRAIVVVASTENWIIYQMDVFNAFLQGDLFEEVYMELPKGFGDKGKGQVGCKGQKQVCKLVKSLYGLKQASRQWNAKLT
EALSQSGYTQSHLDYSLFTKRKGTGLVIVLVYVDDLLITGNDPKLIQDTKQVLHHHFKIKDLGELKYFLGIEFCRSTQGI
IMHQRKYALELISEVGLAGSRPSTTPLECNMKLTSADFSEDNSDELFDDVSRYQRLIGKLLYLTNTRPDIAFSVQCLSQF
MQKPKSSHWNAALKVVKYIKMAPGLGLLMSSDKQPQLTGFCDADWAACPTTRRSVTGYLLKYGKSLIAWKSKKQNTVSRS
SAEAEYRSLATLTAEVVWMTNLFKEIGMKLDASTSVYCDSKAALQIAANPVFHERTKHIEIDCHFIREKIQGGLIKTCYI
NTRDQQADLLTKALGRSQHDFLLSKLGVLNVFNTSSLRGD
>Copia-45_BRa#LTR/Copia 106-4401  [Brassica rapa]
MSSSSPASNAETITVSDTVKLLNINMTNVTKLTASNFLMWSRQVHALLDGYDLAGHLDGSVIIPPPTNTVDGVTTPNPEY
TLWKRQAKLIYSALLGAITVTIQPILSTATTSNHIWETLSETYAKPSCAHVKQIRQQLKTWTKGTTSIDVYVQGFITRFD
QLALLGKPIDIEDQLEYVLEGLPEDYKQVIDAIEGRDSPPSLTEVHEKLLNHEVKLQSKGVLSSPPITANAATHRGNSTG
SNNNGRNNYHGQNRNNNNNRNQQQPWSQQQNFSARGDQSSRGYQGRCQICAVQGHSARRCPQLQGAAYSSAPGARSFSPG
PTAWQPRANMAMAQSYNPNSWILDSGATHHLTTDLSNLSLHQPYTGGEEVTIADGSGLSISHTGSTLLPTPSRSYNLKDV
LYVPNLQKNLISVFRLCNSNNVSVEFFPAHFQVKDLSTGVRLLQGKTKDELYEWPLSSSKPVSLFASPSPKTTHSSWHSR
LGHPSIAVFQTIVLQFALPVASSLQKHPCSHCFINKSHKLPFYKNTIISSQPLEYIYSDVWTSPVLSIDHYKYYLVFVDH
YTCYTWLYPLKQKSQVKETFILFKAVVEKHFAATIRNLYSDNGGEFIALRSFLATNGISHFTSPPHTPEHNGIAERKHRH
VVETGLTLLHHASLPVEYWTYAFATAVYLINRLPTPVLAQQSPYAKLFKKQPNYLKLRVFGCACYPWLRPYATHKLESRS
LSCVFLGYSLTQSAYLCLHQSTGRIYVSRHVQFDESSFPFVHKSATPIPEPDTSPPIFCPPTTIPINPTPLVHTQQVASP
GQDPHLPQSPSSPTGPASSAAAEHDSNMGSGMNSPVHTSDAHSDTAGNDISPLIPPTSNLQPTPIPPPNPSPSPSPEPNP
SPEPLQPPVQNAHPMKTRSKNQIIKPTKKYSLTAQTKDPYPIPKTVAQAMRDEKWRRAMSDEYDAQIANRTFELVPPEPH
QHIIDTRWIFTNKFLANADYDRPKARWVARGFTQAYGIDYGETFSPVVKSLTIRLVLHHAVTHSWPIKQLDVNNAFLQGH
LTDEVYVSQPPGFKDPDRPHYVCRLRKALYGLKQAPRAWYQELKTFLCQMGCHNSTADTSVFTYIASSDVLYILVYVDDI
IVTGSTTRLVSACIQVLASRFSLKEPKDLHYFLGIEVTRTSGGLHLMQRKYIIDLLTKMNMLEANPVSTPMATAPKLTLH
SGTALDCPREYRMVIGSLQYLAFSRPDFAYSVNRLSQFMHQPTDEHWKAAKRVLRYLAGTLSHGIHISRHSPHTLHAYSD
ADWAGDSDDFISTNAYVVYIGSTPIAWSSRKQNSVSRSSTEAEYRSVANTASELRWVCSLLTDLGITVPTIPTIYCDNVG
ATYLSANPVFHSRMKHLALDYHFVRGNVQFRALRVSHVSTKDQLADALTKPLSRSRFTELINKIGVIKLPPS
>Copia-40_VV#LTR/Copia 72-4116 via tfasty with TTO1_NT, 87.6% SW:4547, 1 frameshift. [Vitis vinifera]
MESNTSRMITLNGSNYHVWKGKMEDSLYVKDYYLPVFASEKPENKTDAEWNLLHRQVCGYIRQWVDDNVLNHVSEEKHAR
SLWNKLEQLYARKTGNNKLLLIKKMMSLKYQDGTPMTDHLNTFQGIINQLVGMNIKFEEEVQGLWLLGTLPNLWETFRTS
LSNSALDGIMNMDLVKSCVLNEEMRRKSQGSSSQSNVLVTEKKGKSKSRGPKNRDRSKSKTNKFANVECHYCHLKGHIKK
YCRQLKRDMKQGKVKEKKNDNGGEDDQVATTTSDFLIVYDSDVVNFACQETSWVIDSGASIHATPRKDFFTSYTSGDFGS
VRMGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQWKLARGSMVIAKGNKSSSL
YLMQARVIDSSINAVDDDSTFELWHNRLGHMSEKGLMILAKNNLLSGMKKGSLKRCAHCLAGKQTRVAFKTLRHTRKPGM
FDLVYSDVCGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDNGGEYSGPFD
EYCRQHDIRHQKTPPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWDEALNTVVHVLNLTPCVPLEFDVSDRIWSNN
EISYDHLRVFGCKAFVHIPKDERSKLDVKTRPCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQDIEKTNPMES
QHSGDLIDLDLAPLKNLPTQVEDEAHDDQHDMGDVETPTQVEDETHDDQHDMGDVETPTQVEVDDDVHEQSPAAEAPSDI
PLRRFTRDRHPSTRYSVDDYVLLTDGEEPESYVEAMKDENKMKWVDAMRDEMESLHENHSFELVKLPKGKRVLKNRWVYR
VKQEEHTSQPRYKARLVVKGFNQKKGIDFDEIFSPVVKMSSIRVVLGLAASLDLEIQQMDVKTAFLHGDLDKEIYMEQPE
GFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVGRNVSRI
DNLKKQLSKSFAMKDLGPVKRILGIRIERDRASKKLCMLQKQYIEKVLAKFNMSKAKVVSSPLASHFKLSSRHNPSTDKE
KEDMRRVLYASVVGSLIYVMVCIRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGISKLKLTFGSGKPILVGYTDSD
MAGDVDNRRSTSSYLMTFSGGAVSWQSRLQKCVALSTTEAEYIAAAEACKELLWMKCFMQELRFKQQRYVVYCDNQNAIH
LSKNSSYHARSKHIDVRYHWMRDALNNNLFEIEKIHTDNNGSDMLTKTLPREKLGVCCSIAGMVSPST
>Copia-34_ST#LTR/Copia 61-4258 via tfasty with Copia-107_Mad, 72.1% SW:3026, 1 frameshift. [Solanum tuberosum]
MAKDDNISTASESLGTDLIATTQTSFTNIPLPSPNLAHQLPVKLTSSNFLLWKTQFLPMVRGCGLGHHIDGSAVIPDQVL
IGDQPNPAYHVWLRQDQLVLSWIVASVSEGILPQLVGAETAHKAWSKLVAAYASGSKPQIRELKIQLHTLRRDNASIETY
VQHAKGIADKLAALQHPVTDDDLVEFIVAGLGPTYRPFTRSLESRQEDISFDALYGLLLNEERQLKRDEALNVIAPTSQF
THTSVATNRGRGRGRGNRGRGRSSNHGYSQMAQNNGYQYNTPSSNMKSLVTDASPIVCHNCEGKGHIARVCPSPRTLNGP
RSFGRPVSNLANTQPSPTQDWLMDSGTTHHLTADLNNLGIHSEYQGPEEVTLGNGSKLPISHIGKSSIMASAKKFTLKDI
LHVPTATQNLVAIIFTKSNNVSVEFFPNHFLIKDLATRAPLHKGLSSGGLYSLPVTKLSSPACFATSLGVWHARLAHASY
PTVRQALPSIVLKSSKSSSLCTTCAVSKSHKVPFSESSFQASRPLDLICSDVWGPAPVVSNDGYRYYVIFFDHFSKYTWI
YFLHFKSEVLSVFIQFRTLVEKYFGCPIKSFQADWGGEFQALTSYLRDNGITQRSSCPYTPEQNGCAERKHRHIVETGRA
LLHHANVPSHFWTNAFETAVYTINRLPTPRLQNRSPFLVLFRIEPDYSLLRVFGCLCFPWLRPYTKDKLSPRSKYCVFLG
YSKIHKGYKCFDPISSKFFVSRHVIFDESVFPFSSQDVMVPETSTNATNDPLTLQLPVTSPTVPSPPQVLPTSQPHSPSS
QVGSPPTTPTITSGTPQPLPTHSSVNEISPCVDLSKCDLPVGASNCIPSQLPSTPARRIVTRSQTGSLKPKQLFSMSAIA
PSFEEPTCYTQAIKTKHWRSAIAEEYNALIQNGTWQLVPPSPSQNIIGCRWIFKTKLKADGSLERYKARLVAKGYHQRPG
VDFVDTFSPVVKPTTIRLLLSLAVTNGWHITQLDISNAFLHGHLDEVVYMSQPPGFVDPSRPDHVCLLKRSLYGLKQAPR
MWNKCLTDALLSLGFIGSKTDSSLFYMSTPGDKIFCLIYVDDILVMGNNPVHIKALVAQLQSQFAVRDLGILSYFLGIAA
TWTKEGLFLSQHKYVTDLLRRAQMDSCSPVTTPISPALKLSSSGGIPFSDPTLYRSIVGALQYLTFTRPDIAYAVNKVSQ
FMHCHMDSHWVAVKRILRYIKSTSAHGLFLSRTSTTLLHGYTDSDWGGDVDDRKSTTGFAIYLGNHLISWSSRKQRAVSR
SSTEAEYRALAAATSELTWVEFLLREIGCFTSSTPILWCDNLSATYLTANPIFHSRTKHMEIDFHFVRDKVRSKTLAVRY
VNTHDQIADLLTKPLSKLRFHELKFKLTVVQNPAQLEGE
>Copia-34_SB_env#LTR/Copia 7067-9238 [Sorghum bicolor]
MARTKNVSGPTAGSGGSPGGDGGGDPPRRFSAAEKGKGKKLATKKRKASDRDAEVAEAVAAAAEAAERGGRSGSLRIGDD
LTPRQRRAVLEAEAFHGSPPGTVTIGGQRVRLVVRDPAKEDPDTETETQAEGPAEGQEQEPPLRRSTRARIQATPRTGTQ
GQSTSTARATPARGTPASCPRPVRIHRDLSLVSAREIQQLRFVPFPTWFPAARDPRAGARFYTVIQEDIYEALVRSQAQF
REHRVIDLEILGNVVGADIRQYFTYLHGLPELLALPGTYCEQWVREFYASVWISPDHSYIHYALAGTDYRVTAQLARQVL
GLRASPTRIHQLCYGNVDPPRRPHGGEIPPVDFVAPCFRAPFGEGSSRTVADLTRPARILDFVLRKTLLPRTGYRDGFTR
MQQWLVAHLISQTEFDLWDLIVSEIEDTISESFRGRRQLPYEHWITLLILRARPLPLPAHLQRELTESDTVFPHYDPRRM
LRAHHDLRGAPPPRAPRGPVPPPSPRGTRSTAAVAETEEQQDIAIGAFADAEAEGEFDFASDSSDDDYQPPVSDLPPRAH
DHEAGGSSSASDPALLAILEGMRADQRRAAEEQARRDRDQAAINAAMQARQDELQRQLLTFQEQQLAFQAQQTTMMAALM
AASGIQLPQIQLPGTSSVRPPTPVPQTQSPSQQPLQLPAQSQPFSTPQHQVSQGAISSGFEQVPQFTPLRSGFTPQSASA
SQLV
>Copia-34_ZM#LTR/Copia 24-4292  [Zea mays]
MQYDGCVSPPREPAKKKRVIPRRAPPVSTMSETSSSSGGVRESSLMWPMLTRDNYAEWAMLMQCNFEAMEIWGVIVPGIA
PKRSQDRQAMSALLRSVPKEMWQSLGARNTVKEAWDAVKLMRLGADRVKEVNAQKLLQEFENIKFKDGESVEDFGMRITN
LVGNLRALGEIVEDIRVVKKFLRVVPARFTQVVVTIEMFCDLKALSVDELVGRLRAAEERIEDKVEQVVDKTGRLLLAEE
EWFKKNKHRFRSNYKEGGGGSGASAPKHKAQPRSEGGTSGSVKLTSEGTPRRKGRCRKCGIYGHWAVDCKRSRKEKAKEP
QKSEANLAVGSVEDHGALMLSMCDVAHNSSYDVHLTEKIIPMTVPDGVWVLDTGASNHMTGNMSMLTQLDQKVQGTVKFG
DGSRVKIRGMGSVVIQDRKSGHKVLTDVYYIPELKCNIVSLGQLEEKGFLFEGKNGKLCIYDLEHNLLISAPRTGNRLYT
VRFGLSSPICLLANSDQKAWQWHARYGHLNFRALQELGEKNLVVGMPNVKKVEQVCDGCVLGKQHRKPFPQVSGFRAEEN
LDLFHADLCGQITPKSVGGASYFLLVVDDHSRYMWVEMLKTKDQAFELFKGIKMRAEVESGRRLKAMRTDRGGEFISNLF
SNFCSQEGIKHYTTTPYSPQQNGVVERRNQTVVEMARCLLKTMKVPSVFWGEAVRTVVYLLNRSTTKALISKTPYEAWHG
KKPSVGHLKVFGCVAHVKLAGPGLNKLADRSRRMMFIGYESGSKGYRFFDPVTNKLVVSRDVVFEENTPWDWESLVLNTG
DKVTETFVVDHQFCDQTPTISTESNSEASSEPTAEGDLSASQGSAVGHDAVPSSPHTPLTSTAQTTGMVSPPVQSPQFSE
GVPLRYRTLADLFDSTEEIQDFEYSGLCMLAADEPKNFEQAIEQDCWRNAMEEEIKSIHQNETWEVTELPKDHKAIGLKW
VFKVKRDATGKVVKYKARLVAKGYAQIHGVDYDEVFAPVARLETVRLLLALAAQGEWEVHHMDVKSAFLNGDLTEEVYVH
QPPGFTDPSSPKKVLKLNKALYGLKQAPRAWNARLDKELVKLGFRRSREEHAVYKRGKDVTLLLIGVYVDDLIICGPDKR
EIHIFKQQMMKSFSMSDLGLLSYYLGIEVKQRPGEITICQSAYAAKIIESCGMKGCNPADTPMEQHVKLLPGKPDQVLDV
TRYRSIVGSLRYLVNTRPDLAYSVGIVSRFMETPNAEHWSAIKRIARYIAGTVGYGCKYLKGKDSDLLGYSDSDHAGDLE
KRKSTSGVVFFLGRNLITWTSQKQRVVSLSSCESEYIAAATATCQGVWLSRLLSDLLDVNVKKFSLLIDNRSAQELSKNP
VYHERSKHIDTRYHYIRECVSNGMVDVAHVSSEGQLADALTKPLGRMKFSELRRQLGVVKIEG
>Copia-38_VV#LTR/Copia 136-4095 via tfasty with COP12_MT, 84.5% SW:4203, 1 stopcodon. [Vitis vinifera]
MTPSSNISSVIPVFNGEHYHIWAVKMRFYLRSQGLWNVVMSEADTPPLGANPTVAQMKAYEEEKLKKDKAITCLHSGLAD
HIFTKIMNLETPKQVWDKLQGEFEGSERVKNVRLLTLKREFELMKMKDDESVKDYSGRLMDVVNQMRLLGEAFTDQKVVE
KIMVSVPQKFEAKISAIEESCDLQTLTIVELTSKLHAQEQRVLMRGDEATEGAFQANHKGKNSGNLQGKKFFKNSRGKAE
GSSRKGKFSPCSHCKRTNHAEKDCWHKGKPLFNCNFCNKLGHSEKYCRAKKKQSQQQPEQHASVTEEDKNDDEHLFMASQ
ALSSHELNTWLIDSGCTSHMTKHLSIFTSIDRSVQPKVKLGNGEVVQAKGKGTIAISTKRGTKIVTNVLYIPDLDQNLLS
VAQMLRNGYAVSFKENFCFISDVHGTEIAKIKMNGNSFYLKLDLVEGHVFSAKIDESVVWHKRYGHFNLKSLRFMQEAGM
VEDMPEISVNAQTCESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTWVYFLKTK
xQVLSMFKSFKKMVETQSGQNVKVLRTDNGGEYTSKEFSLFCQEAGIVHQLTAPYSPQQNGVSERKNRTVMEMVRCMLFE
KKLPKLLWAEAVNTSVYLLNRLPTKSIQSKTPIEAWSGVKPSVKHLKVFGSFCYLHVSSVKRGKLDERAEKGVFVGYAAE
SKGYRIYSLSRMKIVISRDVHFDENSYWNWDLKKVHKCDQTTPSILEPAIESTIIEGPLDVEATSDTPVLKMRPLSDVYE
RCNLVHAEPTCYKEAARFLEWIEAMKAEIDAIERNGTWKLTELPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQ
VAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLDVKSAFLNGILLEEIYVQQPEGFEVIGHELKVYKLHKALYGLKQ
APRAWYSRIDSHLIQLGFRRSENEATLYLKQNEDGLQPVVSLYVDDMLVTGSNVKLLADFKMEMQDVFEMSDLGIMNYFL
GMEIYQCSWGIFISQRKYAMDILKKFKLESCKEVATPLAQNEKISKNDGEKLEEPSAYRSLVGSLLYLTVTRPDLMFPAS
LLSRFMSSPSNVHMGVAKRVLKYVKGTTNLGIWYLKTGGVKLDGYADSDWAGSVDDMKSTSGYAFTIGSGVICWNSRKQE
VVAQSTTEAEYISLAAAANQAIWLRKLLADLGQEQSSPTELYCDNKSAISIAQNPVHHGRTKHINVKFHSIREAEKNSLV
KLHYCSTDEQLVDIMTKGLPKSRLEFLRLKLGMSKANLKE
>Copia-35_BRa#LTR/Copia 26-4224  [Brassica rapa]
MSDIVAVTEKIKGGGGPSSIKCPMLSTTNYTVWAVRMKITLRVHKVWEAVETELSNDEKNDMALALLFQSIPENLTLQVG
ELETAKQMWEAIKTRHVGAERVREARLQTLNSEFERLKMKDNESIDDFGGKLSELASKSASFGATIEEAKLVKKFLMSLP
RKKYIHIVASLEQVLDLNTTSFEDIMGRLKAYEERISEEEEKEDDQGKLMYSNTESRSQQDQSTRGYDQTNRDYNNDPYR
NRGRGGRFNRGRGRGRYGGRGDYTNGGRGVYNNGGRGDYNNGGRGDYNRDPYAGRDASRVVCFRCDKIGHFVAHCPDLKL
KLQEAQEADNTETQEADELMMHEVVYLNEKNVVPEKYETNSGDDNTWYLDNGASNHMTGDQRYFSKLDTTITGEVRFGDD
SRVDIRGKGTISFIDMNGDSRKMMDVYLIPDLKSNIISLGQATEAGCDVRMKGETLTMHDPHGKLLVTAKRSKNRLYKVR
MGLKNEPRLYLTADSESCKWHARLGHINYETIRSMIQKELVLGLPTINVKKRICGSCLIGKQSRLAFPKTTTYRADKILE
LLHGDLCGPITPSTQAGKRYVFVIIDDHSRYMWTMLLREKSEAFEKFKKLRNIVEKETKQKIQTLRTDRGGEFISQEFNY
YCDQAGIKRHLTSPYTPQQNGVVERRNRTMMEMTRSLMKHMRLPNYLWGETIRHVTYLLNRLATRSLNDKTPYELFRNKK
PNVSHLRVYGCVGYAKIVGIHLRKLDDRARKLVHLGTEPRSKAYRLYDPITKKIIVSRDVIFNESEGWECNKEGAETSNN
EGFEIQVGSLGDHRDYGDKETAQIDQRYDAEHKEETETEILEEEETEAQPLRRSERQTTRPKYLDDYILLAEELGEEMLL
YLNDEPRSFGEAKESRYWRKACEEEIESIIKNKTWILVDLPYGAKPIGLKWIFKLKRNSDGSISKYKARLVAKGYVQRHG
IDFEEVFAPVARIETIRLLVSLAAAKGWEVHHLDVKTAFLHGELKETVFVTQPEGFEKKGSEGIVYKLNKALYGLRQAQR
AWNHKLNEVLYQLQFVKCAKEPSVYRKVINGELLVVAVYVDDLFITGTNKRNIDEFKANMSSKFEMSDLGTLSYYLGIEV
CQHEGGITLTQRSYASKILENAGMVKCNPLHTPMELGLNLSKAENEREVDATMYRRNIGCLRYLLHTRPDLSYVVRVLSR
FMQSPRDSHGIAMKQVLRYLKGSMTYGLVFERSTSSVPRLIGYSDSSYNVDPDDGRSTTGHIFYVNNSPVSWCSSKQEVV
ALSSCEAEFMAGTEAARQAIWLRDLLSEITGKQSEKVVIRIDNQSAIALTKNPVFHGKSKHIHRRFHFIRECVENDQNEV
EYVQGDKQKADILTKALGRIRFQEMRSYIGMKDNFKLKGK
>Copia-49_PIT#LTR/Copia 72-4996 via tfasty with Copia-42_BD, 56.8% SW:1104, 2 frameshifts and 8 stopcodons. [Phytophthora infestans]
MAASSISAALSTSTAIASVAPPTTASSSTSTTSTSGLTTGATSGSSIVFTSGVNTTAVAPLQGGFTFGGVMTSGISATLP
VSGLTACMPMGLGSTGMSYGPGLAGCNSAGGVTMVPSYRGAGAGALGIKDISNKPPVMKGSFDLYAVQLKTFLTRLGLWS
VIDGSDMRPLMTASxVDARDNAARDAILRGVPEADAELICHQMSARERWIQIENKQTKREYANYIFARQQLYANMYTREV
KLTDWLREMQMQKRELQHYGKLISDEEFAEILLGNVSQTHREVVRQFSRHYAVLALPGVQYAAPTSAQVMNALLAEDDLD
EKVKVAEDAPHSSISSARKTPNNNNKKFGGNAGKGGKKNRGRGRYKSQKKNGGKDNGDKPKGPECWNCGEVGHIRAKCPV
NTAANDSQGPKQNASMECKRWQNKKTGDADGARNIDALTQRKIGAVETAATKCREVGIVEWVLDTATDVHVCTDLKLLQN
AQQDRNHLFLDFDGVPKQKRLIGNVNLYVxNVLSQREETLVLRGVVHTPTGSDNLLSSHLLEDTGWEIGFDHQRGKRVWW
LKKAGAHLRLEKLGTRYRLRSRPADARGVKAVTQTSNANGLERWHMRFAHLNYSALHRMIMQEAATGFGGLAGVGDSSIN
IDRKCWTCTSSKMKRMSYKKTETRRATSPYQKLMSDMCYMGITTYDGFQHFQLVQDEATRYVWAFLLKEKQEASSVVISH
LQWLLAQGHHIEVFSADQGKELVNNKVKTFLRGKGIEFLWTNAYSPEENGLVEKMNGVLTARVRSLLTTAHMPLALWGEA
FTFAVEVVNVSASTALDGDTPYTRRFGERPDVAKLRVWGCIVHTFTPKVLRVNKLENPGKLGLFVGYAKNSEGYRILNLR
TGNIQELRSVEFDEDLTVDNDYVDQLLTNRYRRGRFVLPDVIPLVRLPVMAAVTHEELTASPAKRQRLSNARSSGGPCAV
AEQSPVSVGYPTPELSSSTPVGVALAAAQLSPxGALQQEAHSVYHEDQCEENGNPDEGVGVLHRYPMPLRELPESFPVSE
ENVDRDVEEAEADAIASGDTGRSCPSSVREDVSSDTDEEELGLGTSFRRSTRIRRPNARLSDYEIELPGSLVIQAIYALL
EPTSVKAALEAPDSDKWIEALNKEYTELLRNNTWELVEKPKDSKVLTSKWVFVRKRNARGEVERHRARITIKGCQQKYVL
NVWETFAPVVCAEAVRLVLLLALHYGLLCRHVDFVTAFLNGPIDCEIYMYQPEFFYDGTGRLCRLLRSLYGLKQAPRIWY
KTLDKYLRDCGFQRSKMDSGVYFRWVNRSPIFLTLYVDDIVIAATNQNIELVLDKLSKKFKIKELGNVSHLLxMVIKYVP
GKMLSISQSGYVAQLLERFKMDIARRCQRPSxRQFSSSRRSxQEDCLCEYxSxCDYQCIVGSLQYLVSCSRPDIANAVRT
LGKFLNRYTKEHFVLAKRVLRYLQGTREYGLVWYKTESPAMQLSAYADANLSEEKDDRRSITGYVLQLNGCTFAYKSKKQ
LVITDDTCSAEFVAASECSNMIMWTRNLCIELKLRRTKKTILYEDNQAAIQVIKEVRSSYKVKREDLKFHKIRDFVERGI
FQVRYCPSEDNIADIFTNPLGPQQFCKLRERLNVLPVLDNK
>Copia-53_ST#LTR/Copia 169-4718 via tfasty with Copia-6_ST, 86.6% SW:5343, 2 frameshifts and 1 stopcodon. [Solanum tuberosum]
MAPGNSSADLPQNDSAPPVPQTNSSVQGQGIDYNHPLFLNPTDVSGISLISFQLLGIGNYMLWSRSIRLALLGRNKLGLI
DGTVKKEMYSVELWGHWERVNAIVLSWLLNSVSKELLSGLAFASSAFDVWTDLRERFDRVDGSRTYSLHKDIASMQQGTT
SVSEYYTRLKTLWDEFEILVPAPCCNCEVSKGFVTHMNRQKVYQFLMGLNESYQQARSQILMLDPLPTINHVYSMIVGDE
CQKAVVKCTTSLGMTSISSDPSVAMYSRAGSSSGVSNSTGVNQKFKRNSILICDFCKCKGHSKEFCYKVVGYPPDFKSKR
KVQGGSISPPGNHSNQYSSAQANFTYGLNTNIPPPGWGTPQQHSSEGSNVNLKISKAEKEVQQMLQGCTFTKDQYDHILK
MVQQKSESPTVSTCNTASTTGKDSFVVDHSQVWIIDTGATNHMVSSLDMMVKGSVSKLPELKPVYLPNGTTTQVSHVGSC
ALSARSIITNALHVPAFKYNLLSVSQITKELGCSVTFFPNFCVFQELYSGKVKEVGKEEGGLYLLKLHLTKTNASTSSER
EVAFAVNNTKPVDMELWHQRLGHVSSTVLARLFAVNQQNLCTLSKCSVYPYAKQTRLAFPVSSIKTVAYFDLIHVDVWGP
YVVPTVDGSKYFLTIVDDFSRMTWLFLLKHKSVVCVSIKEFLVYVQTQFGKAVKIVRSDNGTEFVNSVCVNLFKDMGSMH
QRSCPYPQQNGVAERKHRHLLEVTRALRFQASIPVSYWGQCVLAAAYLINRLPSSVLGYETPYERLYGRKPVLTHLKTIG
CLCYAKQLTEHDKLLPRSRSAVLMGYSEIQKGYILLDLSNRSFFISRDVLFREDQFPFAQMSSPIEKVFPDSMHDSAVLP
PRLDHMLTSYVPASTCPSDAQQEESELPLCHALPVPEVDTGVIASDSDDATSRMPSVRRSSRPKQSLLWLKDFVSCTLNN
PVPYSLCNYMSYDHLSSPYQAYIAATSIIREPDTYSEAVTDKRWVDAMQSEIQALESNNTWVITDLPQGKRAIGCRWIYK
VKYKSTGEVERFKARLVAKGYSQQEGIDYKETFSPVVKMVTVRTIVALAASRQWHIHQMDVFNAFLHGELDDEIYMQLPQ
GFVSQREKVCRLTKSLYGLKQAPRQWNHKLIEALLKLKFQQSQHDHSLFINKAEEGIIIILVYVDDMLITGSSLKLIEDT
KRALQQAFKMKDLGELKYFLGIEFTRSTVGILMHQRKYALELISEVGMTAAKPAGTPIDINVKLTSKLYDEHVKKxQAKT
EDPLVDQTMYQRLIGKLLYLNMTRPDITFSTQTLSQFLQQPKKSHFDAALRVIRYIKRQPGQGLLLSSSSDGLVTAFCDA
DWASCVLTRKSVTGYMVKVGQSLVSWKAKKQTTVSKSSAEAEYRSLASTVSELVWLLGLLKEVGAEVQLPVQVYSDSKAA
IQIAANPVYHERTKHIEIDCHFIREKIQQGLITVSYISTRDQPADVLTKGLSRLQHEHLLSKLGVLDIFAPPSLKG
>Copia-53_GM#LTR/Copia 245-4408 via tfasty with Copia-93_GM, 80.8% SW:3901, 1 stopcodon. [Glycine max]
MNGHVPGNLLVLHGKNWSKWSVQMRALFGFQDVYEVVQNGIEEPTASTPDAQRQVWKDLKKKDCKALFFLHQCVDSAHFE
KIAAATTSKEAWDILAKACSGDDRLKKVKLNALKRQYELLQMEDNERICDYFTRLLRIVNQMQECGERFKDQDLVEKVMR
TLTPRFDGRVAAIKEARDLSEMKIEQLQASLEAHELKMNERSPARLQDQALYASKQKQGWKNKKWRGNAKRYSNKHEGNN
PSFQGKNDQTDFALDHSMPYGRKGESGSSNKAGKGRFDKSKIRCYNCQGWGYFANECGSADVREKKKKYSKNEAHMAQAK
QQNESESGSDVEAVVLMTTICNFSSNVDAETWYLDTGCSNHMTCNLNWLVNLDNSRRCTIKFADNSTVKSMGVGNVAFRR
SDGSLAIIEEVMYVPNMRCNLMSLGQLLEKGFSASLKNKFLDLLDPGDVRVFKVPLSRNKTFQVNMNNADVQCLASTANE
DESWLWHSRLGHLNFKGLHQLQSQKLVDGLPRIRIPHRICERCLTSKQPRSSFKSESPTRAIKVLGVVYSDVCGPLEVCS
MGGNKYFVTFIDEFSRMMWLYLIKAKSEVLSIFKEFKVLSEKQSGKAIKVIRTDGGGEYTSKDFEFFCIQHGIIHEVTAP
YTPQHNGLAEMRNRTVMNMARCMLKEKHLPSEFWGEVVSTAVYILNKSPTKKLKNKVPEEVWTQRKPTLKHVRVFGSLCF
KHVPDEKRKKLQDKSVPMILVGYHPTGAYRLLEPLSKKIFISRDVVIDEDGSWDWKKKSTISTLVEEENTEVEIIEETGI
EVENDRSAAVHLRPQRDRHLPLKFKDYHVELPNILDQAAVTEDEEKVEAKRNASEFVHFAFLADVEPIDFRDALQQDQWK
AAMEEELRAIERNQIWDLVDLPSNQSPIDVKWVFKLKLKPDGSVAKHKARLVARGFLQRAGLDYSEVFALVARLETIRLV
IALAHNRDWSLYQLDVKSAFLNGTLEEEVFVKQPPDFEIKGKEDKVFRLHKALYGLKQAPRAWNKRINSFLIKESFHKCE
KEHGIYVRKNDKEDMIILCLYVDDLLITGSNPLAIEKVKERLKLEFEMTDLGLLSYFLRMEFKKAKELMIMHQQKYTTDL
LKRYQMMSCNPASTPVEPGLKLVKDESEKSVDSTLFKxVVGSLRYLYNTRPDISFAVGLISRFSDDPKASHWAAAKRILR
YFRGTLNYGILFTKEADQDGFTDQVEISELIGFSDSDWCGDKVERKSTTGYLFKFLGTSISWCSKKQQVVALSSCEAEYI
AACYTACQALWLDSLLEELKVEIQRPVRLYVDNKSTISLAMNPVAHGRSKHIETRFHFLREKVSKKQLDLRYCNTEMQLT
DIFTKGLNVNSFVVLRDKLGVSPMEILN
>Copia-54_ZM#LTR/Copia 36-4547  [Zea mays]
MSLPPERSRTSQYRRGRSPPRRPRTREVVVERVVERVVAPGTTTYPTLTKTNYNDWALLMKVKMQARGLWEAVEIGDVDD
HHDRMALDVICSAAPPEMVSTLAVKPTAKDAWEALKTLRIGDERVRKSTAQRLRREYEMLSFRDSESVEAFALRLTDVVA
QLAMLGDPESPEKVVEKYLRIARPRYKQLVISIETLLDVSTLTVEDITGRLKAAEDADDAPPPSTGGKLYLTEEQWEARR
KEQQKGGDGGTSKSGDRRRHPRRGVPASSGRTGTGPGRKLGRDQCRKCGQTGHWARDCKARPKQEAAHMAQEEEALMLLR
AAPLRRSPPVGSAPPPPPAGSAPPPPPGGSAPPPLPPPAGSAPPPLPPLAGSAPPPPPAGSATAPPPVSPAPSRTSSPSS
PYSPPPHDEVLGAPSAVASWSSQEATAASTDGRIQLQEGKVFVQLGAKEQRDPRSWICDTGATNHMTGSRAAFADLDTAV
SGSVRFGDDSMAEIEGRGTVLFKCKNGEHRSFTGVYYIPRLTANIVSLGQLEEADYDVHLWRGGMEIREPEGRLLARIPR
AGNRLYVLNVDVARPVCLAARGEESAWRWHARLGHINMPALRKMAREELVRGLPSIEQVDQLCEACLAGKQRRTAFPDQT
QWRADRALELVHGDLCGPVTPATPSGNTYFLLLVDDRSRYMWLTLLRSKDRAAAAIKEFQARAEAESSCKLLALRTDRGG
EFTSKEFMEYCAADGVHRQLTAPYSPQQNGVVERRNAMVAGTARCLLKAKGLPAWFWGEAVNTAVYLLNRVPTKAVEGKT
PFEAWYGKKPAVHHLKTFGCIVYVKNTTPHLKKMEDRGRKMIFVGYERGSKAYRAYDPATKRVHVTRDVVFDESAQWDWS
EGAKTGTGADHGGDDTFTIQFQVVAGPGGAQAGAPVAALQHMTPPGTPGEAGVASPGVQFATPPAALDEDLDTDHDDNAP
LRFRTVEDVTGAASPPGYAVRVLYSEQLFAVSAEEPGSLAHAGQDPCWRRAMEEELRAIEDNHTWTLTELPSGQRAIGLK
WVFKVKKDEHGAVVRHKARLVAKGYAQRQGIDYDEVFAPVARLEAVRLLLALAAQEGWQVHHMDVKTAFLNGDLQEEVYV
QQAPGFAQPGQEHKVYRLHKALYGLHQAPRAWNQKLDEKMGVLGFTRCPSEHAIYCRGEGAERLVVGVYVDDLVITGTSS
SNIQTFKAEMTKVFKMSDLGLLSYYLGIEVKQDELGITLSQERYANKILDLSGFADCNSCDIPMQAKLKLSRKDDSPCVD
ATEYRSLVGKLRYLVNTRPDLAFSVGYVSRFMEEPHMEHFAAVKQILRYIAGTRSWGLFYPRKNEKKTELLGFSDSDLAG
DLDERKSTTGVLFFLGNSPISWQSTKQKVVALSSCEAEYISAATAACQAVWLARLLAEITDSVVSKPVLRVDNKSAISLI
KNPVHHDRSKHIDTRFHLIREYANSGQIEVRFIRTEDQLGDILTKPLGKLKFRELCSKIGIQSL
>Copia-57_GM#LTR/Copia 35-4030 via tfasty with Copia-91_GM, 78.8% SW:3474, 2 frameshifts and 3 stopcodons. [Glycine max]
MASNGPFPANLPVLIGKNFSRWQVQMKALFGFQDLTDIVENGVEVPRDNAPDAQKAGFKELKKYDCKALVILHxCVDDSH
FEKIAGATIAKKAWDTLNKAYVGVDKVKKVRLQTLKRQFELLQMEENEGIGDFFGRLQVLTNSMKGCGQKFTDLILIEKV
SRSLNPKFDHIVVAIEESKDLESMSIDELQGSLEAHEKRLQERNNCNTNPVETALQAQQNPKNSGNESSRGKKGRFKNSR
GRGNHGSREHLDHKNNGNQSSNRERHIGNRGRGGKKTWDKKNVDCYNCGKKGHYAADCWYKDKNPADEAQLAEEADLVPE
PVLLMVTNKTTPDDKGQWYLDIGCSTHMTGHKDWFVCLDERMKSKVRFANDITMLAEGIGNVLIQRKDGRETCIEDVLYV
PGLSNNLLSLCQLLQKGFKITMEDMMMMVYDKTRNLIIKTPLTRNKTFKIGTQALEHECLSAVSNKEEWLWHYRLGHLNF
RDLAQMHKLAQGIPQLQQSQEKCRNCLECKQTKKPFKKFIPVKLTQKLEIIYSDVCGPIQVESLGGNMYFISFIDDFTRK
TWIYMIKRKSDVFNIFKKYKAYIENQSSRKIKVLRTNGGGEYTSKEFLEFCDEAGIVHEFTPPYTPxQNGVAERKNRTIM
NMVKSMLKCKDLPxNLWSEAASIVAYVLNRSPTKRLNGVTPEEAWSGIKPNVKHLRILSAICYKHISDQLRQKLDDKGEL
MVFLGYHETGGYKLFDPRSKQIAISRDVEFDEFKNWRLELESTSRNARFLIEADYSGNNVVVTAVTPDQGILRKSTRVTQ
VPQSLRDYEVYKDDQITEGGDLVHLALYDGAEPIDVEEALQEPQWIQAMKEELSSIKKNNTWDLVNLPKGKIPIAVKWVF
KVKKNPIGEVVKHKARLVAKGFPQREGVDYGEIFAPVARIETIRLVVAIASMRRWSMHQLDVKSAFLNGPLEEDVFVDQP
PGFSSCGQEDKVYKLKKALYGLKQAPRAWNRKIDGVLNQIGFEKCISKHGVYIKGETTADLILLCLYVDDLLITGSNMLE
INKVKQLLMKQFEMTEFKETETGVEMHQRKYAADLLVKFHMSNCNPTATLAETGLMMSLNDEGELADATLYRQIVGSLRY
LYNTRPDIAYSVGIISRFMKAPKISHMMAAKRVLRYMKGTNDYGVLLPFGQNESNQNMFSYTDSDWRRDKDDRKSTVAYV
FMYGGALISWSLKKEDPVALSTCEAEYIAASLGACQGLWLRKMLKEMKIQKKEPICLLIDNKSTINIAKNPVDHGTSKHI
DTRYHFIRDKVDKGKIKLTYCKSKDNLAYLLTKPLKKAKFEELRSKLMIKAN
>Copia-55_MLP#LTR/Copia 26-4612 via tfasty with Copia-82_Mad, 66.5% SW:1502, 1 stopcodon. [Melampsora larici-populina]
MSSSSERPQSEEPSLTDDESTESTTSSSSSASNQTAKLQISTSSTFDTLLNSSNTMSTEETPNALFGNSLQKYGQQLNNA
LSKFKLTDVLEDGNYPVWSRCIVVNLETIELHHYVLVKDYVDSELTKDQVLKTRKIIVNYILNYLDKKNQTQSVTHLNDP
NDPLEIIYDPFKLWLYLKERHFLVNAQRLAFITKSLSTIKITRGETLTSFLDTFENLFVDFLRYGGKMDDMQSAIRLIDA
IDTLSSHTVEFIHTTVVPLTRIGVAKYLREFETRHSFSTEVTRGTNFSEVNANSAYRGNRVVCTETVCRGNHPPEKCWSK
PENFKERDDFLARRRGIKSNQHTNVKSQPSFNGSVPSSQEQVRGMKRVTDQASANAVTASLEMMCLNTELTPLKSNDVTS
VSIHTEMMTGHTIFEEVDSEPSANASKVENSMTIWALHDTGATHHMFNVKSIFVQDSLKPIEESNLRLKLAGGNVSLAVE
SVGRVQLKAGDGTVFELSECLYVPELSKNLIAGGVLKMKGVREVYDKTEPNCFALVNKGLAIFNGVILPNGLMNIIIDPV
SNPNTIKSEPSSCSSIFHRRLGHISPQYLRQMVKNGSVDGIKDLDFEFMNCDICSLSKNTKLPFNHTRPRATKFLENVHV
DLSGINRITAVGNEKYYILFCDDFSSFRHIYGLRDKSKEEVKSVVMSYIALSERQTCCKLKQLTLDxGGEFLNNSLGPEL
RNLGIVLHLTAGHTPEQNGVAERGNRTVMTKARCMMIESGVPLSFWFLACEAAVFLTNRTITKAVSNFKSPFEIWYFRKP
SISHLRVFGCKVFRLIRKELRTSKYLPVSSEGVLVGFYQDNFNYRIFDLNDKKFHITPHVTFNEDQFPFRVHPSRISDNE
TDVIRTFYFDDDDSSEEINVETNAEISNENSDEVEACEQNFQSVPITPSETPEVIHETVDSTDNPSNIDSNDSQPSVPTQ
TRFTFRNIPKVDYKGMASMAVFEDTDYLSQFDCLPPEVNHVSSSTPDPKSYKKAMSSGDSQLWTEACNKEMSSLLKKDVW
TLVDRPTHKAVIRGMWIFRKKDTADGSIKFKARYVAMGNTQVEGVDYGETFAPTGKPTSFRILVAMAAIHGWEIHQMDAV
TAFLNGILEEEIYIEQPEGFQVKGQEHMVLKLNRSLYGLKQSPKIWQDDVEGFLIEIGFHQCEVDPCVYIRSDEENEKFT
AVYVHVDDMAITGNEIEKFKTEISLKWEMEDLGLAKMVVGIEIQRRGNQIYALTQSKFALTILNRFEMTTSKSASTPLTP
NLKLYRATDEEAAKFLLLKLNYRSAVGSLIYLSQCTRPDLAYAVGVLSQHLDKPGIQHWNAALNVFRYLKGTINLGIVYS
GKDVSSVSGQRSYQFPISHCDADWAGDRSTRRSTTGYIFTLAGGALSWKSRLQPTVALSSTEAEYRAITEAGQELLWLRR
MMGYFGCYDSEATVLESDNLGAIHLTSKSIFHGRTKHIEIQYHWIREVVNKKEMIIKHCPTSEMVADLLTKALGKQQFIK
LRSKLGVKS
>Copia-52_MLP#LTR/Copia 146-4639 via tfasty with Copia-106_AA, 60.5% SW:1408, 1 stopcodon. [Melampsora larici-populina]
MNEEEFPFPVDFYTSSPLNSSTSSAEDFQSTSDIDSVGEQTILEGLIPNMASSTLPPTNVGTATVTSLFGNKRYQIASHM
SNSLLKISITEKLNDTNYPNWSSEVRNGTKSLSFTNFLLSDKDESGINDDLKIFNDVVRESLTTWMISKLDQPNRNWFEP
FITVETGIGPDLESSPSKLWIKIRDHHAPRTPAHQMLMRRILFQLNQGSSTLSKHLDNFHRAYTAFTTSGGSIGQVELGQ
QLLMSLNSEWIKVAEDIADKDTFEYNSVVTALNVRITNREMLHPNTKNLPIIEANAVSPMRRRQGFVQTRCSPKKCVSLT
HTEADCIRNPKNIDKYKAWVASKKAKGEWVERGPPSTSSVSVHQAEAITVPQSFPSLSSLQDALERSEFSASASAVYIVN
SNADIENEHFGIVDSGTTHHMFKSIKYFDVKSFIASSSPSERVGLAGGSTTLEIQGRGNVTLIGPSGDLTTLTDCLLVPS
LKQNLIAGGRLLYEGWITTRRDNGSFVIQKNGKTALTGKVDPTSMLLHVNAVRTLSSEPSPSSAAITDNITETLQLLHHQ
LGHPNLAYLKQMIKGDIVLGIPVSLSKVVLPQTLPCNSCDLAKAHCQPHSQTRTRSLHPLDNVHIDLSGIMRTPALCRSL
YFILFTDDHTSFCHITGLKSKEKEEVHDAIQTYLSLVERQCDRKVKCLTLDGGGEFLNDVMLPWCQSQGIYLRITAAYTP
EENGVAERSMRTIVSKGRAMLLxANLPIRFWMEAVKNAVFLNNRTMTTTIPKNKTPFEMWYGRKPDISHIRAFGCLAYVL
IRKPDRDNKYAPNSEHGVLAGHTEHNRNYKIFTLKDSKIVITHDASFREDVYPFTQLPTFDISHLTADEENVDQLVLQTE
PPVLPATEPDNDIDEQLVTVADVPIEPLPDVLPQPSLPRRSTREVRPVDRFIPNSNFVFWYNNKLYDDVFIPRGDVSAYA
FAVKSNVRLITEPGSYKQAMKSTDSAEWKKACDKEIENMTRKNVWTIVDRPLDAPVVGCQWHFKIKHRPDGSIIKYKARL
VAKGFTQTFGVDYDKTYAPTGKPASYRVLVAIASYFGWSIHSMDAVAAFLNSLLKEKVYMEQPEGYESLGSEDHVCELLR
ALYGLKQSAHEWNDEFKTMLFTIDFVQAEGDECVFIRRRSQFDIIIFYLHVNDMAVTGTDQSIPGFKKEVMAFWEMDDLG
EATCVVGIETLRVSKHHYAIHQRSMTEALLLQFGLSDCKPASTPIQGGLKLTTSTSEEAASFAKLNRPYRSGVGSLMYLA
QCTRPDIAYAVGVLSRHLDTPCERHWDALQHVMRYLRGTLSLGIHYHAGDTTIFKMQASWNVPITNVDSDWAGDKSSRRS
TTGYLTTIFGGAISWRSRLQQTVALSSTEAEYRATTEAGQETQWLRNLFRDVGLEYSGPININCDNLGALDLASNAVHHG
RTKHIEIEHHWIREQVNQGQINLVYCKSSEMTADLLTKPLHPGPFWEHMKGVGLRRCV
>Copia-50_MLP#LTR/Copia 86-4315 via tfasty with Copia-2_PPa, 61.2% SW:1624, 1 stopcodon. [Melampsora larici-populina]
MSDGQTTTSSAPATPSDFTIQQDHTHITQVMSNHTSTSEAMHIAPLEHDWQRWSPLMLAHFMEGDLDGIVDGTEEEPAED
ATAAIKLDYQRRRKKAAGFISRKLSPENHALVINTANIKDPKAIWDALVKLYASTKARNRARILRKFLNLKCSDNALSSF
LTEYRKITHEMTEVSFKIDDDILAHMLLYKLSPRYHSTHDLLAHTAETADTLLTLDQVFEHLQQIVLDYQPSSVPPPAAL
VAERRTPAYPRCLNGVHNPLTSHTEEQCYQAHPELKPIRNINRSNNRSSANATISGTVLTTYVFNATLTGKPVLDSGASQ
SMFSSRLCFTDYRPCHAAIHVANGQTINAVGTGTVSGSHDGKAISFTNWLHVPELSTNLVSMVALVRKGCTFNFTPDSSF
NVIVGSDVVLTGDTKSGVMEVNFDMGKSPSPSLSLTAATQINSVTLHRRLGHPGRVPLEKAFPGVIFSDSCEPCILSKHH
RLPSKSHLPLACDRLSVLHSDLSGIISPPSLGGGRYYFKITDQKTNFKFVYILKTKCQTFSYFVQFKALVENQTNLKIKT
LVNDNGGEYTSKQFSEFISHEGIKMDFTAPYTPQQNPISERGNRTTTEKARALLKQANLPLVFWAEAVSTSVYLENITPI
ARNNFLTPFKSWFGKSPSYSHLRVFGCLAYVHVGKERRTSKFSDVAKKGVLLGSQGSMHNYRIYLLDEHRVVYSHDVVFN
EEVFPFADPTTLHAFNKKFGSFDNHFLEDLNDDVSYEELLPSSPIHPLSEDEDMSISKIPSFDAVPSTSSSDQPVQNEST
TDQQPSDTPVIKDSQIEVEPQVEDQPIEDEPNEDEEPRQREELTSHPxYAYIPASVPAPKAISSSIDTSNIITSRRRANL
AVNTLTSTRRALLVNQNSEPQSYREAMNRTDSLKWKEAINKELNSLIEMGVFTEMELPEGAHALGTTWAFRRKTDENNVV
IKHKARLCAQGFSQIPGLDYNETYAPTGRAASMRIALSICGIDDLELRLMDAVGAFLNGIPEEVLYIKIPQGYIPKLTGK
NIVLLLNRSLYGLKQSPRCWYKMVKTFFLSINFSPSKSDPCLFISKDPNWRCFVHVHVDDMLIMGKDTARFSKLIQTRFK
MEDLGDVSFYLGMRLERDRVARTITLTQDKYILSMLDEYGMRDCHPVSTPMVPGSYLAPATDEDHKLFLETGQNYNRAVG
LLNYLVLCTRPNLAFTAGQLAQHLKKPGPEHWAAFKRVLRYLQGTYQDGLVLGGGVIDLKIYADSDYAGCPATRRSTTGY
ISKVGNGCVSWRSRKQASVSTSSTQAEYRAAYKAAQEAVWLRRILTDLGCPQSGGTTFLCDNQSSLALQKNPLFKDRSKH
FAVHLHWIREQVDANVITPTYIPTKEMLADVCTKSLPRPQHQYLTDQIRN
>Copia-50_BG#LTR/Copia 192-5189 55.4% sim to Gypsy-26_BG, SW:1777, [Blumeria graminis]
MSSSSVPSTKFDSKSNIEDDCEKYDPSIQTQIDVNAWITSFMVQVELVEYFNDDLFELFIEEFVKFDFAQFKRCGDIVLR
KLKNFLYDRGVYVRKSNISHAKALSEIMDNDTNAWPIDTKNPSAHIGCLKANNFKSPRITQSRANVQSYFERNIQKIDDK
NRLQENQSTYANTNSDQKTNINFKLAGMSKFFNNSEKYCGGKDENFDFKFKIFLKKCALADIKNDDDILSSVFVMFDKEA
LDYYHHRCSSASNIQEIITLMHQQFEGPQKQRNVQHEWNKTTLQLVSAKYPDKSLLDTFESMVKQLRTMQLCLRTNFQDE
ITLRDKILEAVSNVPECRPACLMPEESLSTVINNIRGAIGMSSSSESKTDETMFVNRRFHHNDRNNHRGAHKSNVVHNGR
YSKSSSSRVKRCYCCKKVGCRSWNHSQEEQNQARNRFLQRHNNDDAKIYQQFLAEYEGECDDGSDEEAMILDKLSISNSN
KSHDGFFITGHEDSDTDQDIGEVYMNLEPTADEDNQYEISLLALLQDQANFHGLTGLTPTIYKCKEDLRERYNCTRWYGV
MIDTGAGKYSTAGYQQYIAFKRDIEDINLNTSTKISVAFGKGSTCDSLGYIDVKTPIGRVNFHVLDSDTPFLLSIADMKR
LNVYLNNVDDKIYAKIIPGKQNSVNNNKLYEQVCSVVMKFGHPFLRWKNFNDNYFSNFFMTGAWSSKTNDKIEENHIFIN
HNINLTEQQIRRLHKRFGHASVSKLSNLLNAAGYTQFRPLLTKIVKHCELCQKYGSAPRRFKFSLKNEDCCFNQTIFVDI
FFINNRPVLHIVDEATRFQAAKFLNGQTTKSIWDSIRLSWIDVYVGPPDLIVHDAGSNFTSKEMQQFANSMGTGTKCIPV
EAHNSIGIVERYHEPLRRAYNIIEEDLAGQQIDKSVILQMAVKAVNDTAGPDGIIPTVLVFGVYPKITQAHASNLSIIQR
ANAIRKASNAIAKLRAKRNITEALHQRNGPNTAPLHNLPLGSKVWVWRETGKWTGPYTLLEMHDEDCIVDLPSGPTKFRS
TSCKPYYEDYQNNAVTASQNNNNNNNCNNDHRNDEDDNNDNEKNYENKNENNVNNNDNNDENNDSKEPRRNPKRNRQLPE
RYRRYSAFPGFSTATSVSPTETSSFINKKTNEIDFSESRKFEIQGLIEKGVFRIVHRSKAGQNRLFGSRFVDTIKNEGTP
KAYKKSRMVVQGYNDDEKNTILTQAPTIQRVSQRLILCLALMTKNKLKILLRDINQAYVQSATFLNRKIYVKAPRELGLE
EEYILNILKPLYGIPEAGSHWYHTYHKHLQEKLNMENSTYDSCLLISKPMRNENCGFGIIGLQTDDTLILCDEKFANQEE
TQRQKANFKAKPVERLTTAHTINFNGSAISLQEDGSILLTQEKQCRKIELINHNDNIKTQYISQRALGAYIATVCQPEAC
FDLSRAAQTSNPGINEAALLNKRLNWQKKNLNRGLKFVALDHCSLHILVFTDGSFANCKEDMSSQIGYVICLADKNNRAN
IVHWSSTKCKRVSRSVLSSELYAMVMGFDMATVIKSTLEKVYNSLKFPGPPISIPLILCTDSRSLYECLSKLGTTTEKRL
MVDIMALRQSYEHQEVTEIRWISGSKNPADSMTKDKPCDALRKLIDENKVDISANSWMESGVNHKN
>Copia-50_VV#LTR/Copia 81-4355 via tfasty with Copia-15_Mad, 85.0% SW:5044, 5 stopcodons. [Vitis vinifera]
MDINKTRLTSSKATTEALDPFSLHHSDHPGMVLVSKVLEGDNYSTWSRAMRISLSAKDKTGFVTGSIKPPSSTDDSFPSW
QRCNDMVISWLLNSIHPDIASSVIYAETASEIWADLRECFSQGNDSRIYQIKRDIVEHRxGQQSISVYYTKLKAFxDELS
SYHEVLSCSCGGLEKLKERDEKERVMQFLMGLNDSYAAIRGQILLMQPLPDTRxVYSLVLQQEKQVEVSLNNGNKNHYAM
LADRDNKATSAHxVQKQKTPLHCSYCDRDCHSIEKCYYLHGFPIGHKLHGKNVKPPNQRHSNANNVKVETNKAVETEAKL
LPTNDGPRLTTEEYNQLMAMIQKNNGGNSQHFANATGINKPSSKIIPNCPHSNMCWIIDSGATDHVTSSAELLDPKILPK
TTTISLPDGGQAHIESIGSLHVTPHIKLDDVLKVPQFQVNLLSVSKLTRALQCIVMFSSDFCVVQDATTRKTMGLGKQHN
GLYYLAQDQNPALAYAIHKHSDLWHQRLGHPSSGPLQVLAKVNSEIYFDSKHVCDIFPLAKQTRLSFPSSFISSHAPFDL
IHCDIWGPHRINSHSGARYFLTIVDDHTRYTWIHLMSFKSETQGILQSFISWVETQFNRCIKTLRTDNGTEISSMKQYLD
TKGINYHHSCAYTPQQNGVVERKHRHLLNVGRALRFQANLPLKFWGESIQTACYLINRLPTPILSDKSPYQLLYNKLPSY
HHLRTFGCLCYATNLLPTHKFDQRARRCIFVGYPLGQKGYRVYDLETHKFFYSRDVVFHEHIFPFHTNPQEEQHDVVVLP
LPQTSYEPITTETTKPQADDxPPPLLSSLESTSNECTLDLDTIVSPPPPATRRSDRIKQPNVQLRNFHLYHTTKVTSSQS
SSLSGTRHPLTRYISYAQLSQKYRNFVCAITTLVEPITYEQAVLDPKWREAMAAELHALEQNHTWTLTPLPSGHRPIGCK
WVYKIKYNSDGTVERYKARLVAKGFTQREGIDYKETFSPVAKLTTVRCLLAIAAVRHWSLHQMDVHAFLHGDLLEEVYMQ
LPPGFCRQGETPMVCRFNKSLYGLKQASRSWFQKFSATIQQDGFYQSRADYSLFTKISGNSFTVVLIYVDDMIIAGNDEN
VIATLKESLHTKFRIKDLGQLRYFLGIEVARSTDGISISQRKYTLDILDEAGLLGAKPLLTPMEENNKLLPTVGDLLKNP
SIYRRLVGQLIYLTITRPEISYSIHILSQFMQEPRKPHLHAVHHLLRYLKGALGQGLYFPAKGNLLLRGFCDADWARCSI
TRRSVTGYCIFLGEALISWKTKKQTTVSRSSAESEYQAMASITCELTWLKYLLDDLKVEHSQPAKLFCDSKAALHIAANP
VYHERTKHIEIDCHVVRERIQSGVIVTAHLPSSCQLADLFTKPLNSSIFHSLLNKFGILDIHAPT
>Copia-51_VV#LTR/Copia 90-4346 via tfasty with Copia-56_BRa, 73.2% SW:3464, 2 stopcodons. [Vitis vinifera]
MAKGGSGNGNRGGQVNSEIVVVEDSSSPYFLHNGDHPGLNLVSNLLTGANYHTWRRAMLMALTAKNKVGFVDGTISKPMS
HDLIYGAWNRCNIMISSWIINAVSREIVDSLLYLDSAYDIWRDLNDRFNQGNGPRIFQIKKQLSALNQGSLDVNSYFTKL
KILWDELREFQPVPVCHCGGLRVWTDYxHREYVLQFLMGLNDSYAQIRGQILMMDPLPAINKVFSLVIQEERHRIVGYSY
SGSHNSDPMTFGSNSNAPTGSSSGSKTRRDRITCSYCGFQGHIKDKCYKLVGYPPGWKLKNKGPNSSSMANNSEVLESLN
AGSSESTVSSLTTMQCQQLIQLLTNQLSSTSSASTENSSTGPSVSNFAGNKVKIQNKGWIIDSGATHHVCNDISLFDSSI
VVQNVRVTLPTGITVPIDRVGSVILSKDVKLLNVLFVPTFRYNLLSVSAFTDTLSLSMVFTPDACIIQEPSxGKMIGKGS
RKGQLYQLDFDSFVADKAFVAASRIPTSNILSLWHSRLGHPSFSRLKGLQSILDFDSSFDLTPCNVCPLAKQRCPPYISL
NKRCSSTFDLLHLDIWGPFSVGSVEGYKFFLTIVDDYSRVTWVYMLKNKSEVQKYIPDFFAFVKKQFGKEVKAIRSDNAP
ELFLSNFYHSLGVIHYRSCVETPQQNSVVERKHQHILNVARALLFQSSLPVCYWSDCILTAVYLINRTPSPFLNNKTPFE
ILHDKLPDYSHLQVFGCLCYVSTLKANRTKFSPRAKAAVFLGYPFGFKGYKLLDIETRSISISRNVIFHEEIFPFSKTNP
CSSPDISSDLFHDRVLPCIAADNDQSSSVLPRVVSQPPLQVAPSSRPTRVSKQPSYLKDYHCSLINSVAHVETHSTSHPI
QHFLSYDKLSPSYKIFSLSVSIISKPSSFAKAAEIPEWRAAMDCELEALEENKTWSIVSLPVGKHPVGCKWVYKIKHKAD
GTIERYKARLVAKGYTQREGIDYVDTFSPVAKLVTVKLLLAIAAIKGWHLSQMDVNNAFLHGDLNEEVYMKLPPGYNRKG
ESLPSNAVCLLHKSLYGLKQASRQWFSKFSTAIMGLGFSQSPSDHSLFIKNVDGLFIALLVYVDDVIIASNNQGAIADLK
SELNKLFKLKDLGDVKYFLGLEIAKSSTGICVSQRKYVLDLLSDFGYLGCKVASTPMEANVKLSMDEGVNLPDVSLYRRL
LGKLLYLTLTRPDISYAVGRLSQFISRPKLPHLHAAQRILRYLKGNPSMGLFFPSNSELRLMAYTNSDWARCPDSRRSVT
GFCVFLGNSLVSWKSKKQHIVSRSSAEAEYRAMANTSCEITWLLALLKDFGIDHSAPALLFCDNQSALHIAENPVFHERT
KHIEIDCHLVRDKVQSGVLKPLFVSTEHQLANVLTKALHPSSFKLLIGKMGLKNIFSPS
>Copia-51_BG-I#LTR/Copia 188-4615 via tfasty with Copia-46_BG, 1 stopcodon. [Blumeria gra]
MSTNDILKALQCAPQLSTSTFTRWSDLVERVFSNLDIEAHIYEHISGLHDLNVESAKTSPLHxQDRQIQVALISLVPEEL
FHLVSNLKTAKEMWDSIQTFFKPRCEGTVVTLLKDFWRFEMPDGTTVDKFAEELVRRQMRIACIDPTLKPRDDIMKGYLL
DFFDTCCGGYFAGSVTTLRNNTDCSFASAVQSLRSTQANYEGHKPLPSASFASGSREPGTPPANYPSNTSVNPHLGKTCT
HCGRVNHTRETCFSWLRTPDGSRWAAKNPEKAAITRSLFRKFGRKRDGPSSGGASNRRNSGEAWIVSEYVLSASSCPVVK
DVVLDTGATNHIFADRSYFTSLSATKKRVQTASGHVLEVQGIGSVSFDVGNFSDSSLSRTITLDNVWYLPACTKNLVSGS
QLHSNGYGMHTSKNGLYIVHGEDNNSLATARVKDGLFCFNVVNSSPNSLISSRTLLSSHRSSSSNLTSSTALITKGKSPT
SCDNYSSFSDVPSAALITKGKSSVSRGKLSLNSATSLTSLPSNSASEISRLIHHRCAHIGAGILSLLDNSQLNQMTDKKV
PFEKNSFLQSIKDCDVCLSCKQVEKIRRDPSLRPKSVLQLVHSDTWGRCRATGILGANYFVSFTDDFSRESEVFLLRSLT
EVPSCFAKYKESKELQTGEKIKAFRSDGGTEYNLINFGGISHQKSAPYTQHQNGVSERLNRTLVTMARCMLSHAHLPLRF
WDAAISSACYLLNRLPHSHQKISPYEIFHGFSSGLSHLRVWGCLCYVLIDSEDPQRYKLSPTSLKGIFIGYCDSPTQYRA
YLPSKQGRNKIVVSANVRFVEDKFWDWSRSAQEQFGDLEIESGNIGSSNHNKEDFSSSEGANPNPVYSRMDSSNQSHPIS
FSTTSSVASQEYLLIPDEGITSSVPFNTPPTATLHPVSSAGQNDPDAQPLVASLRRSSRIAKQIESSSNLQPEPRILYVG
GDAPIPRNFSEAINGPNSLEWKAAIKDELDSLSEKKVFTPVTHVPHGRKPIGSRWVFNVKSDGRFKARLVAQGFRQIYGV
DFFETYSPTLRMDSLRILLAVSAYLDWEIHQIDIKTAYLEGDLQEIIYMKAPEGLSGSKFLLVNKALYGLKQSGKVWNDK
LNSKLLSLNFLSSSSDQCVYVHSRKPVALGVYVDDLVICGKFLYDILDLKKQLSSAFPVKDLGELTTVIGWQITRDRSTR
TLQISQSEYISDKINSFGLGEAKSSSSPLDGYDGILPTLEGDTSADESAYSSAVGSLGYAANSTRPDISFATSQLGSYNS
SPSQRHWNSVCRVLRYLKGTLDFCITYSFGPASHSQDHKAILFSDSDFASDTHSRRSTSGHIIMLGNGPISWQSRKQKSV
STSTAEAEYVALSEASKQSIWVSRMLKELHVADQFLYNGGMLVYTDNQSAMAIAKGTNSSKTKHIDVAYHFVREKVDSGE
ISISYIPTGKMIADILTKPLSAPKARPLCAEIFNSK
>SHACOP6_MT#LTR/Copia 58-4467  [Medicago truncatula]
MVEHDETLETPKASTNKSLTNKYDDPSDPLYLHHSDQPGLVLVTQQLSQSNYPLWSHAMLMALTTKNKDGFVDGSIKKPS
TTSSKEYKQWIRCNLLVKGWILNTISPSIAQSVMYNDDASKIWSELKERFSHANNVHLFHIEQEIHECVQGDMSIGDYYT
KLKGLWDERDALSPLPLSDGNVAKKLKEYQQTQHTIQFLMKLNPVYATARGQILLMDPLPPVNKVFSLIIQDEKQRDISS
QVTSEAVAFAVRNEPPNSNKNYQPKYPHLKCDRCNLAGHTAENCRQHLKCDHCGYKGHTIDICRKLKRENVQGDRKGFSN
SLSRANHVNSKSDKAETTSSYNLTADQYHDLLELINRTKSVSVANQVSTMNNLSGIAPKYLTYGKNIRWIFDTGATDHMT
CSSQFFTTSSPVTNRYVYLPNHALAQVTHIGTIHFSKSLILYNVLCVPSFELNLISVAKLNQTSSCHATFTNNLCFVQDQ
HSGKTIGTGIEEAGLYYLDTSKFAGCRSFAAMVTSTNPHLWHQRLGHPSNKSMHAISLCSELVKFHSISDCSICPLAKQT
RKPFSTSSINTKSCFELIHVDIWGSYHVSTLQGAKYFLTIVDDFSRCTWVYLLHTKSEARKYLLTFINLVETQFESRIKI
IRSDNGLEFSIPNTYHDKGIIHQTSCVSTPQQNGVVERKHRHLLNVACALLFQANLPKTFWGDAILTATYLINRTATPIL
QGKTPFEVLFHKPPTYHHLRVFGCLCFASNHHHKPSKFDTRSVRCIFLGYPYGTKGYRVYDLATGKIFISRDVMFHEHIF
PYTSAATLSNPLTHQVPITTTVPHVAMPFFPSPTPLLLDDQQQTPPIVAPTTAPLETIIPTTTSTSDAATSDSTTLTLPE
APHNTPLPAPIPKRKIQAPSYLQQYHVEVSLPTRSLPSSHSVLAAPKGIPHPLSQVLNYDRLSAAHRVFTTCISVVKEPT
SFHQAVKDPKWRLAMDEELSALHDNNTWSLQDLPPNKNPVGCKWIYKIKFNPDGTVERYKARLVAKGYSQVEGFDYRETF
APVAKLVTVRLLLAVASSMNWHLRQLDVYNAFLHGDLEEEVYMSLPPGYGRKGETRVCKLHKSLYGLKQASRQWFIKLSK
VLVLADFTQSKSDHSLFVRRHETSFTALLVYVDDIILAGNNLQEIERIKAHLMEQFKLKDLGNLKYFLGIEVSRSKQGIT
LSQRKYALEILEDMGYLAVKPANSPMEQNLSLSKTDGDFIAEPSSYRRLVGRLIYLTITRPDLVYPVHILSQFMDKPRIP
HLEAAQRILRYIKKTPGQGIFFSSTSSLQLNAYCDADWARCRDTRRSTSGYCVFIGNSLISWKTKKQVTVSRSSAEAEYR
SMASVCCEITWLRSVLYDLGIEHQQPVKLFCDNQAALHIASNPVFHERTKHIEIDCHLVREKVQAGVVKTYHISTSEQPA
DVFTKALSVPQFSNLINKLGMINIYSNLRG
>SC-1_pol#LTR/Copia 1571-5736 via tfasty with OSTONOR1, 1 frameshift and 4 stopcodons. [Oryza sativa]
MGNIEQLNGSNYASWKEKLEITLALLDIDYALHNDPPVEPRPENENYETLKRIYDEVKAKWDISNRKCLMIIKSSIIDAI
RGAVPDTQTAREYLAKVEEQFKGSSKVYATTLIKRLVNERYDFTENLREHIMKKCHMVSKLKSMEMEISEGFLDHIIMSS
LPQEFSPFTIDYNAMKIKWGIDELIAMCVQEEERLKAERVDHANLFKHSEKKKYKKFMKEHLRLSLFNxRKRAFSNQSQQ
NRSGGNPYTEEKGKEKDGCYFCGKSGHRQKDCIGFMRWLSKKGTDVISFVDESLNIDYATNSWWIDSGATIHVANSLQGF
AMRRTLRRGQRRIRVANGVETEVEAIGDFTLTLHTGFKLQLHDVLYVPSMKRNLVSVSRLDNGGYYCTFGNNRCIIMHDN
KDVGLAVxREQLYQISVCDATYNVDSSSNANVNTKRKHNDNETSSKLWxYRLGHISRGGIERLIKENILYPLDFSDADVD
HCIDCIKGKYSKQIKKGANRSMGVLEIIHTDICGPFNEKSVDGFDSFITFTDDYSRYGYIYPIKERSEALDKFKIFKAEV
ENQHDxKIKIVRSDRGGEYYGRHTTYGQIPGPFARFLQENGIKAQYSAPGEPQQNGVAERRNRTLMDMVRSMLSHSTLPV
KLWMEALKTATHILNRVPSKSVPKTPFELWTGKKPTLNYFHVWGCPAEARVFNPNMGKLDIKIISCHFIGYPDKSKAYRF
YCPNQFTKFIETRHAVFLENDIIKGSMTPREVVLEEKRNSFPMPIIEEPVFSTHTHVAPSIERNNDATPAETPATTSSSV
SNDENNEDAQQPQIVIDEQNNEPVRRSQRVRKSAIPSDYVTYINEEVNKPMGEEVNEPILDNDPISFKEAMKSKHSSEWL
KAMKDEMKSMSTNKVWDLVEIPEGAKTVGCKWVYKTKRDPKGNIERFKARLVAKGFTQREGIDYNETFSPVSTKDSFRII
MALVAHYDLELHQMDVKTAFLNGDLYEDVYMAQPEGFVMKGKEHMGCHLKKSIYGLKQASRQWYLKFDQIIRQFGFKENK
KDDCIYTKFKESKFIFLILYVDDILLASNDKNMLLETKKFLASKFEMKDLGEANYVLGIEIYRGRSNGVLGLSQKAYIEK
VLKKYNMHNCSASPAPIMKGDKYGKFQCPKNEYEAAQMKSISYASAVGSIMYAQVCTRPDLAFVTGMLGRYQSNPGLEHW
KLAKKTLRYLQGTKDLMLTYRKSENLEVVGYSDSDLAGCVDDKKSTSGYIFTLARGAISWKSSKQRVTTSSTMQAEYVAC
YEATGQAIWLKNFIPGLRVVDSISKPLKLYCDNKPAVYYASSNKSSASAKYIDIKYHVVKEMIQDQTISIEYMNTKLMLA
DPLTKGLPPVVFKEHVAGIGLVEKPSILE
>SHACOP14_MT#LTR/Copia 64-4517 via tfasty with SIRE1_gagpol, 2 frameshifts and 3 stopcodons.  [Medicago truncatula]
MEKVGGFVNRPPLLYETNYDYWKSRMSAYLKSVDSKTWKAVLRGWEHPVVLDKDDNKTTDLKPEEEWTAPEDELALANSK
ALNALFNGVDKNMFRLIKKCDVAKDAWDILRTTHEGTSKVKSSRIQLLTTKFESLKMQEDETIQDYYMNVLDIANSFDSL
GEKLSDEKLVRKILRSPKRFYMKVTAIEEAQEVSNMQVEELIGSLQNYELVVDNRTEKKGKGIAFTTSTADDVGKDEDAE
EDKLTEDMAMLGRQFNRVMKQVNNKFRGNGRNFRFNTDRQQGNPKYDRGDEKNSQYKGVQCHECEGYGHIRTECATFLKK
QKNGMIVAxSDDEGTDGDVDSDAARHVTAMTGRVEPSYDSADEELICEEVILPKCDQEGTNAVSAKFTSGHEATINQLLQ
ERSKHLSKITELNNEVILLKSQLDHVLKQVKMMTTGTEVLDRMLNSQIVGKPNGIGFTHEHLKKEHHSNSHSQALEHYQK
NRNKKPVKKIMFVTSSSKVSVPDKMLEHSVELSISESVKESSTLRCDFCNRPGHKKSFCFDLPGIPKQYQPRSALKKEWI
PKWYFDSGCSRHMTGVESFLENVRTYAKSCVTFGDGAKGKIVEIGDLVREGSPRLSNVLLVNGLTANLISISQLCDQGLS
VNFSKTECQVLDGKGKLSMMGTRSKDNCYLWMSQEKAHLSSCLISKDEEVKLWHQKLGHVNMQGVKKAISHDAIRGLPKL
DITERSICGECQIGKQIRVSHPRLEHQGTSKTLELLHIDLMRQMQVASIGGKRYVLVVVDDFSRFTWVNFIREKSDTFES
FKELCIQLQREKNRGIVRIRSDHGTEFENSRFHEFCAKEGIRHEFSSPITPQQNGVVERKNRTLQESARVMLHAKHLPYH
FWAEAMNTACHVHNRVTLRTGTTTTLYELWKERKLTVKYFHIFGSKCYILADKDYRKKMDPKSDEGIFLGYFNNKTxVVM
ESINVVIDDGVKEEISEVVPDVEADLETSTQENVVPETEVEPEATSVVAEVDQAEANKGPSIRVQKNHPQDLIIGDPNQG
IRTRRSNEVVSNSCFVSKFxPKNVKEALTDEFWIEAMQEELNQFKRSEVWELVPRPNDINVIGTKWIYKNKSDENGIITR
NKARLVAQGYTQVERLDFDETFAPVARLESIRLLLGVACILKFKLFQMDVKSAFLNGYLHEEVFVEQPKGFIDPNFPDHV
YKLKKALYGLKQAPRAWYERLTEFLINQGYKKGGTDKTLFVKKEHGGVMIAQIYVDDIVFGGMSNQMVQHFVQQMQSEFE
MSLVGELTYFLGLQIRQMEDTIFISQSKYAKNIVRKFGLDNASHKRTPTATHLKLSKDENGVAVDQSLYRSMIGSLLYLT
ASRPDITFAVGVCARYQAEPKMSHLAQVKRILKYVNGTTDYGVLYSHSNNSQLIGYCDADWAGSADDRKSTSGGCFFLGN
NLVSWFSKKQNSVSLSTAEAEYIAAESSCSQLVWMKQMLEEYDV
>TCN6_pol#LTR/Copia 280-4354 [Cryptococcus neoformans var. neoformans]
MSNNTDNNTSYQGVILTGPQNYAEWELSIKTSLILKDLEIGTPVSLDSMSSKEDKEKYKRSRQAFALLIKSLSPEVQASL
PANIRSVETADSSALWEELKSQYSAAVGARQAQLLQQMWISPVIEGEDPNKRMAEIRSAHAQINSSGENLSDRMLAYAMT
LALPESFTTVKQTLWLREPLTSSAVQAAVQAEWTRRSSEEVAMANRVQESHTQGNKSNRRAKPREWTEKWCSIHKVPTHN
TRDCSLRKFSNNHSQSGQARVGTGESAKAEELASTFHAVAATTTCFHDNSFIVDSGASHHMVSNKGLLHNYGPATIVRSV
KIGNGTILPVAGQGTMTIGATTLQQVLHVPQLQCNLLAVNKVPSGFHWAFSSSKGELFDQSNQVCLSAPFKDGAYSLQVD
PSGHAYPVQLADTLSEWHHKLGHLGIEKVVRLAKEGRLGQNNQLKNANAGDTKDFYCEACIKGKTGRLPSPPEPNIRASR
PLELLHIDIWGPAPVASKGGMRYFLTVYDDYSHRISLTLMRMKSETLQSFKNFVNHAETQTGHKVQSIRSDRGGEFTSAA
FQRYIREKGIEHVMVPPDAHAQNGRVERAHLTILNGVRTLLVETGLPASFWGEAAKYIAFSRNCSFDSNNGIPFERWYGK
KLLFTQLHAFGEKIFFRDYTNTNKLKPRYRQGRFMGYASDSSTSSYRILDDEDKKIKVSRDTILPKKLDIPHSKMPARGS
ILRLEEWDDNKNRDTSTHAQDPLAEIPDRIIPAPMEVNPQDEVRPRAVPAEHQSPMELLRRLARYDTGIQQQPEASPSSN
ASEETNSDVSSIDPLALTDNPETWGTIATALNAMAINTPNTYREAIQSGEGEQWHQAMMEELEKMEKYNVWKVVDRAPGQ
RVLKARWVYTRKIDGTTGKPAAYKARWVAKGFSQKAGIDYNEVFSAVAHKDSIRVFLSLVNHLDMECDQVDIKAAFLNGD
LEETIYLEAPEGSDIPANKILLLNKSLYGLRQSPRCFNKALDQWLKSQGLKPTRADPCFYVRRCEGELLMLSVHVDDQLI
ACNSRKTLDEFKQALNSKFECSDSGPAGYFLGINIYRDRPQKKLYLSQEHYMESLLDRFDMSNCNPAKTPLPSGFKPIPA
TDQEHELAQHRPYPKLVGSILYAATVTRPDLAHAASVLSRFISKWNESHWLAAKHCLRYIRGTSDLSLTFDAHSSKRVAL
GYVDADWGGDLDTRRSTTGYVFKIYGGVVGWKSKRQPTVALSTTEAEYMASADAAKQAIWLRLLLDDIGLGLGDQPLQLL
NDNAGAIALSKNPVNHEKSKHIDMRHHFIREKVEDKAISLAHVPSVENIADLLTKSLPAEAFVKLCHLLGMQRLDQGG
>SHACOP20_MT#LTR/Copia 33-4697  [Medicago truncatula]
MSSPSSPVNNSETQRVTAAASKNFKQIISVKLDETNYLQWKQQVEGVLRGTKMVRHVVSPQIPPVFLNDAAREAGTENPA
YTEWEEQDSLLCTWILSTISSSLLSRFVRLRFSHQVWDEIHNYCYTQMRTRSRQLRSELRTITKGTRSIAEFIARIRSIS
ESLMSIGDPVAHRDLIETVLEALPEEFNPIVATVNSQTEVISLDELESQLLTQEARNEKFKKALVGETASVNLTHAENSG
EKNGHNQPQTGSYPDQQFNISGNPTGNNSSQYFNPNFGGRNGSRGRGFRGNRFRGRGGRNFGRGNIQCQICYKTGHDASI
CYHRLSVPPQYEGYGSLGGNFGGNLGSGYGPATGFGTHSNVWMQGVGQRNPSYGAPRAPFPPQFGNSRPPAPQAYITGNE
STSSNSFNNGWYPDSGATHHVTPDANNLMDAASFSGSDQMYIGNGQGLAINSIGSMSFSSPFSPNTTLTLNNLLHVPSIT
KNLVSVSQFCKDNNVFFEFHSNICYVKSQDSTKILLKGHLGDDGLYQFDQPYVPSVSRTASSSSVATSSLSLNNCFSPSS
LSLSRSQCNNGSVYTPIHTSGSSNDSSNSLSLYKVWHNRLGHPHHEVVRSVMKLCNQQLPNKSFTDFCSACCLGKSHRLP
SVSSKTVYNKPFELIFCDLWGPASVESHGGYSYFLTCVDAYSRYTWIFPLKLKSHTLITFQNFKTMVELQYNLPIKSVQT
DGGGEFRPFTQFLTTLGITHRLTCPHTHHQNGSVERKHRHIVETGLTLLANAKLPLHYWDHAFLTATYLINRLPSPILNN
KSPFFLLHLQIPDYKFLKSFGCSCFPFTRPYNNHKLELRSKECVFLGYSPSHKGYKCLDPTGRMFISKDVIFNEYKFPYS
ELFTSGQSSSPPTTSSDHTPLPSFLFPLNNKQCPTTQSSSTPTTTLHTASPHSSFPESNQSNHHHSIQDTHASSHSNHHN
ISPGPIFNPTPISTHPPSPSPSSHSHNTYHSISVEPVTSQPSTQAEPHRIHPNNTHSMATRAKHGIVQKRKHPTLLLTHI
EPTGYRQAMKQPQWLQAMQLEHEALMKNNTWTLVPLPADRQAVGCKWVFRTKQNPDGSINKYKARLVAKGFHQMPGFDYK
ETFSPVVKPVTVRSVLTLAVTNKWCIQQLDVNNAFLNGYLEEEVYMTQPPGFEAVDPSLVCKLNKALYGLKQAPRAWFER
LKSTLLKLGFCSSKCDPSLFILHANQHSTFMLVYVDDILITGSSASLIQQLVKKLNAEFSLKDLGKLDYFLGIEVHYSEN
GSLLLSQKKYIQDLLVKANMANANGIASPMASSTKLTKYGSNHVSDPTFFRSIVGGLQYVTVTRPEISYSVNKVCQFLSA
PLEDHWKAVKRILRYLKGTIHHGLLINPAPMHQPLSLTAFCDADWASDPDDRRSTSGACILLGPNLISWWAKKQTLVARS
SAEAEYRSLAQASAEVLWIQSLLKELKVPTAIPQIFCDNLSTVSLAHNPVLHSRTKHMELDIFFVREKVISKDLIVSHIP
AQYQVADILTKPLSASRFLELRNKLRVSDPMSLRG
>Retrofit7#LTR/Copia 67-4442 (1 stopcodon) [Oryza sativa]
MASSSSNPSALNGQTVSEKLTKSNFVLWKAQVLAALRGAQMAGFLDGSNQAPAATIIVTKDDGKTTEKVANPALVQWKAQ
EQQVLSYLLSSLSREVLTQVATLTTAADVWEAIESLFASQSRARILNTRMALSTTVKGNRSMAEYVGKMKSLADDMASAG
KLVDDEELISYILAELDFDYNSVVSSVTGRTGPISVSDVYALLVGFESRLELLQNAANPSANTASRGGRGGRGRDGRGRG
GGNPGRGGGFGRGRNDGKPKPTCQLCDKIGHIVAKCWKRFDPSFTGEEKNANTAAVNSYGIDTNWYIDSGATDHITGEME
KLMVKDKYTGNDQVHNASGAGMNIDHVGHTAIRTPTRDLTLKNVLHVPDACKSLVSAHRFTRDNKTFVELHPFFFLVKDQ
VTRMPLLRGRCRSGLYPLPTDKLQTISNKQAFGVVKPSLFRWHSRLGHPSFSVVNRVISQNNLPVVRDSSQEFVCDACQK
GKSHQLPYPKSSSVSIEPLQLVFSDVWGPAINSVGNKVYYVSFIDDFSKFTWIYLLKHKSEVFAKFQDFQNLVERLTNRK
IKAVQTDWGGEYQRLNSFFQRIGIEHYVACPYAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFTTAAYLINRTP
TKVINFETPLQRLFNLPPDYSLLRTFGCACWPNLRPYNARKLAFRSKQCAFLGYSTLHKGFKCLDISTGRVYISRDVVFD
EQIYPFEKLHPNAGARLRAEINLLPVHLLPLLDHGGVQMHDQPLIDDSNPANPIIENSAGSSAGNGAKSGAQHGHDFMQS
SGGQPTGGHHDSLTHSTIHGTDNQADQENSASSRSAEPVTPRHAASPSAAPTASPHAAAAPIASSHAAASSPSGDIVGPG
SHGPSQEDQDTSASAPASSTSNDDDSAQFAAQPTRPVTRAQRGIHKPKKYTDGTVRYAGLTHTGELGNLQEALSNTNWKS
AMDSEFAALVRNKTWHLVPPKQGVNVIDCKWVYKIKRKADGTIDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRLVL
SLAVSQGWSLRQLDVQNAFLHGYLEEDVYMRQPPGYEEKKMPYYLCKLDKALYGLKxAPRAWYSRLSKRLQELGFVSSKA
DTSLFFYNKKGLVMFLLVYVDDIIVASSSGQAVTVLLKELEKDFALKDLGDLHYFLGIEVKKTEKGLLLTQERYAGDIIK
RTGMSNCKPVSTPLCVSEKLWSNDGEFLGANDASQYRSIVGALQYLTLTRPDISFSVNKVCQFLQNPTIVHWAAVKRILR
YLQGTLGLGLKIDKSLSYIVSAFSDADWAGCLDDRRSTGGFAVFLGSNLISWSARKQATVSRSSTEAEYKALANATAEVM
WVRKLLEEIGLLHPGPSQLWCDNIGATYLSANPMFHARTKHIEVDYHFVREQVAQKMLEIRFVPSQDQIADGFTKPLPVR
QLQLFCNNLNLGELRLRG
>OSCopia1#LTR/Copia 54-4273 via tfasty with ATCopia51_1-4214, 1 frameshift.  [Oryza sativa]
MSHSSGASDASSTSDEEPVPAPSTSVLQTVNIRSHVPVVLDLDVSNYSQWRCSFESVLGKFGLEAHVQEPPALDLRTAEW
RRADHCVVNWLHNSIAKNVFDVVYKPRASAFTVWSDIEGVFRDNAVQRSVYLETEFRSINQGDMTITQYTAKLKQLADGL
RDINMPVSEPSQVLNLLRGLNTKFRSLRASIADRNPPHTFMTARSYLLLAELQMQHDAKAEAGEALYAGTGSSSGTSDTT
GQPRPKGRGKRRGRGGGAPPGGAPSTPGGGAGAGHDGQPRPPAPWGYNPWTGFVQAWPFPFRAPGAGVLGPRPPFQAQQA
MTAQHLLPALPPASPGVHSTGAWDNSALYSALQSAGVATTTPPSAADWFLDTGASAHMSSTPGILAHPRPLPFSSCITVG
NGAKLPVTHTASTHIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQTQVVKLRCDSPGDLYP
LRLPSPHALSATSSPSVEHWHLRLGHPGSASLSKVLGSFDFQCNKSAPHHCSACHVGTNVRLPFHSSSSQTLFPFQLVHT
DVWTSPIYSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVLALQTDNGKEYDSYALRSLLSLH
GAVLRLSCPYSSQQNGKAERILRTINDYVRTMLVHSAAPLSFWAEALQTATHLINRRPCRATGSLTPYQLLLGAPPTYDH
LRVFGCLCYPNTIATAPHKLSPRSLACVFIGYPADHRGYRCYDMVSRRVFTSRHVTFVEDVFPFRDAPSPRPSAPPPPDH
GDDTIVLLPAPAQHVVTPVGTAPAHDAASPPSPASSTPSSAAPAHDVAPPPSPETSSPASASPPRHAMTTRARAGISKPN
PRYAMTATSTLSPTPSSVRAALRDPNWRAAMQAEFDALLANRTWTLVPRPPGARIITGKWVFKTKLHADGSLDKYKARWV
VRGFNQRPGVDFGETFSPVVKPATIRTVLTLISSKQWPAHQLDVSNAFLHGHLQERVLCQQPTGFEDAARPADVCLLSRS
LYGLRQAPRAWFKRFADHATSLGFVQSRADPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGP
LKYFLGIEVQRTADGFVLSQSKYATDVLERAGMANCKAVATPADAKLQAVKQRGPLFQDSSWYRSIAGALQYLTLTRPDI
AYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTAFSDADWAGCPDTRRSTSGFCIFLGDSLISWS
SKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDNISSVYMSKNPVHHKRTKHIELDIHFVREKV
ALGELRVLPIPSAHQFADVFTKGLPSSMFNEFRASLCVGDTTAATAG
>Maximus_p4#LTR/Copia 7706-10435  [Hordeum vulgare]
MVATFINEAKWKEQQAKQAKVAKLKKEKFLKQNLLNLTPDDLVSTQAELKTLTDKYSKLSDRQSLKSNFIKLATEAVNNY
NKKAAPPVPTTQPLIEEPADETPQAEEIPQESRVDEPAIEEITTDHPADESATAGEIDPAPAAASKPADESVPAAASKPV
DDSPPAGSSKPADESAEKTPSPKASKVKKMTLSASDVKKTRAAEKEAKKRKASSAEEHTEAKRLKALEENAPLDPVPLNI
APSYEMVTFEDQEKGPDEEMKDAASEDHTNEEIRIDDSPQPSIPHEETAQGSAAPADESGSVTNQAEEEQSENPQADEIQ
SPKQNPHLEDQADPTPPKQDPQTKAQGEPIPPLEPNPQHDAPVDDIPQPEAQPDHIPQPDAQQEHAPQPEAHADEIPHPE
DHAEENAPDQDNAFVVLNPESAIIVSPQVQQQNLQAMQRQPFSKRPKFQKENFFEERMYFIGENPYDKPQIRHLKFWTRT
QLNYYASVLCGRNKIFQRRHIPHVELEAIPCLAPVLNVLHEAGLLPMCSDICDWNSELILQFYATLHISGDPADMNTWVF
DWMTQITHHKASAIELLRELPVSIPSEQAVKLYDERELPNGMMEVLMKPLAKGQPPRKTFLVHELKYEPRSVYRILCSVL
APIKGHDDEEDVVGLMKNILFNIIHGIPINIHDVFLRTLADNAMCPFDHKIYAPWIMRFIRKRTGINFHADCNNHVGYMP
PIRVNKKTFEPVEGKGKSVIDEGSRPLDGQFREPEPYSSWDDTETHPPSPVAPRVLNTRELLLSLHQKVDRNHKWVKRQF
GAIVKTLTETQNSVKLNHDYLHEFFYRTWATLAHLKTPAELEELEFERDFDWSWPPKKKFRPIPVPDLEDNSFSSFRTVE
SDEEQQDTATGPRKKTTPKNPHASSLTAKE
>PCretro6#LTR/Copia 74-4239 [Phanerochaete chrysosporium]
MTASANSGSDSSSISASVRIEPLQGSENIAPWKVKIMDILTSLGLEDTITSDPPQAPEDADKATLIQHEKAKAEFKRRSL
QALSHIRLRVSDAVLVYISAATTAKEAWDTLMQTFQPSGMYSYILAYRKFYQTRCPDGGDIPEHLGQMRRLRDEIHTIAG
TARISDREFAFALLISLPDSWDQFIQAIDATADNLTSAQVIARILQEDKRRKEREGAKGDSALLAKSKKKARPRCHNCGK
QGHLKKDCWASGGGAADKPKANDAVDGEFGFIAAEGQNSADPEPDIEKALSALDESRLWYADSGATTHVANARELFHKYQ
PTAGGASISGLGGVSRIAGRGSVKLKCKVGNRIRKIWLHNVVHVPGAPHNLLSLTRADDAHCRYVGGKGTLTMYGPDGKI
LMVGRKLEGPGQLYRLSVAAELADQANVAVLGKRTWEEMHRILGHAHLASIKRLCLGLAEGVDVDMTSDDQFQCESCVRA
KQHVQPFPDQATRTPDKLKVGEIVASDTWGPAQVRSVHSFYYYMSMTDLKSRFSGVYFSAQKSGLAKMALTEFRGLIRRM
SRTGSSIMCLRIDNGTEFINNEFLQYCKSQGIVVETTAPYSPAQNGVAERLNRTLRESARAMLLAAELPRKFWPEAVSYA
CLIKNRLPHAALKGMTPYQALTGEKPDLSLLREFRSKCWVLDQSGNPGKLDAKSRPCIFLGFATDSKAFRCWDIGKNTFV
KSRNVVFAARKREQEVLLPSPRSAPEGESADTSSRAPEGQGAAAQAPADPSDPSAQKSSAAEGSGGVPDGKPAQPKAPTG
VRPPTREASARLRSKPPVDYLRMHNPQARGPRQSKSTEEDAPADAAAEPDASSDSDDVVEYAYLGADLADDDPRSYRDAL
KRPDAARWQEAMQREYDQLTKLGCWDLVDLPAGRKAIGCKWVYRIKRNFSGAIIKYKARLVAQGFSQVPGVDYDETYAPV
MRPESLHILAAIAVILNLEWDIENAVGAYLNSQLKLTIYMRQPEGFDDGSGRVCKLNLALYGLKQSGREWNLLLDEFLRG
IGFRASSVDPCVYLRIDEGSPTFLAVHVDDFSLFAKTREIMDKLKGELSSRFEMTDLGPVRQILGYEVIRERDQRTLMLR
QAAYIRKVLDRFNMADSNPVSVPMDPNTRLQKTPDAPPPDFPYREAVGSLMYAAVGTRPDISYAVQTLSQFCERPSTAHW
TALKRVLRYLKGTAEWGIIYKAPEAQTTPIEVVGYSDADWGANPDDQKSISGYVFLLGGAPVCWASRKQKSVALSSMEAE
YMAGSTAASQALWCRMLLEELGFAQPNPTLLYMDNQSALALARNTGTQGRAKHIDIRYHFLRDKISSKEISVAHCPGEDN
PADIFTKPLARQKFEHFRAMLGMSASRG
>Retrofit5#LTR/Copia 29-4332 via tfasty with Copia1_ZM_109-4419, 1 frameshift. [Oryza sativa]
MAGSSSSTASTNPLFGVQVSEKLTKGNYALWSAQVLAAIRGARLDGHITGATAAPSMEIEKTASDKTTEKIVNPAYQEWF
ASDQQVLGFLLSTLSRDILTQVATASTAAQAWQQVCAMFTAQTKARSLNVRLTLTNTQKGNMSISEYCGKMKALADEIAS
SGKPLDEEDLVAYVLNGLDDDFEPVVSAIVARNESTTMAEVYSQLLNFENRQALRQAHASANAGRGGFQRGRSGGRGTRG
RSNPAAPGRGRGTGGNQTRGGNDRPICQVCLKRGHVAAECWHRYDETYVPDERSAAAAAAYGIDTNWYLDTGATDHITNE
LDKLDVREKYKGGDKIHTASGAGMEIKHIGDSVIHTPTRELHLKNILHVPQAKKNLISAHRLAMDNFAFLEVHSNYFLIK
DRATRNTILKGRCRRRLYSLPTSPAKQVHAATTPSFSRWHSRLGHPAVPIVTRVLSKNNLPCSTVANKDSICDACQKGKS
HQLPYPKSSSVSSQPLELIFSNVWGPAPISVGGKKFYVSFIDDYSKFTWVYLLKHKSEVFQKFQEFQTLVERFFGHKILA
VQTDWGGEYQKLNTFFAKIGISHHVSCPYAHQQNGSAERKHRHLIEVALTLLAHASMPIKFWDEAVLAAAYLINRTPSKV
INFACPLEQLFKEKPNYTALRIFGCAVWPNLRPYNKHKLAFRSKRCVFLGYSNLHKGFKCLEIATGRVYVSRDVTFDESI
FPFSELHSNAGARLRAEISLLPPSLVPHLSSLGGEQNNHVLNYPPNVTDQFGEENAEIGEEIVANGEENAAAAADENAAA
AANGGAQDDVHGVAYDASPEHSSPVTDDAMASAAEQHGNPIQEEHLVQASPQTASSTSPSVASSAGVHDDVTTDQSDQTD
QAMPEAAVAPIRPKTRLQSGIRKEKVYTDGTVKWLNFTSSGEPQSLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKG
RNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGV
LEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDI
IVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVN
EGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGF
SDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDN
LGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNLERVKIEE
>Retrofit4#LTR/Copia 47-4387  [Oryza sativa]
MASSSKTAAGNPLGGNAISEKLSKSNHALWKAQVMAAVRGARLEGHLTGATKTPNALITTTAGDKGEKEVTVRNPEFDDW
VATDQQVLGFLLSTLARDVLAQVATCGTAAAAWQMLEEMYSSVTRARFINTRIALSNTKKGTLSINEYVSKMKALADEMT
AAGKIVDDDDLISYIIAGLDDTYEPVISTIVGKDTMTLGEAYSQLLSFEQRLALRHGGDSSVNLANRGRGGGGGQQRGGN
TGNGGRGRGGNNNGANRGRGRGNNGGARPPGGVDNRPKCQLCYKRGHTVINCWYRYDEDFVPDEKYAGSATSYGIDTNWY
VDTSATDHVTGELDKLTVRDRYKGQDQVHTASGAGMEISHIGHSTVRTPNRDIHLRNILYVPNANKNLVSANRLVSDNSA
YMELYSKYFNLKDLATKKLLFRGPCRGRLYALPSSSPHERPRPLKEAFGAIKPSFERWHSRLGHPASPIVEKVISKNNLP
CLAESNKQSVCDACQQGKSHQLPYSRSSSMSSHPLELIYSDVWGPALTSVGGKQYYVSFIGDYSKFTWLYLIKHKSEVIQ
KFHEFQALVERLFNRKIIAMQSDWGGEYEKLHSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLKF
WDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCTFLGYSTLHKGFKCL
DPSTGRVYISRDVIFDETNFPFAKLHTNAGARLRSEILLLPSHLLNPTSNPGEQQLDDNMANIPVNPANQIFGSNVQPVS
AENDEADDSSGATENLAEQIHQDTAASPSASDTAASQPGAATSLDVVHFPASPDVMTHHSADSSSPSQPSHATATPASND
DVPSPSHISASEPFATGEEVTQAPSRPTTRLQRGIRKEKVYTDGTVKYKNTFLTVTGEPKNLTDALQNTNWKKAMDIEYE
ALMNNKTWHLVPPKQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSIAVSRG
WCMRQLDVQNAFLHGFLEEEVYMKQPPGYEDESFPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFY
NKGGLIIFVLIYVDDIIVTSSRQEAVSALLQDLKKEFALKDLGDLHYFLGIEVNKVTDEIILTQDKYACDLLRRVNMFDC
KPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTVHWAAVKRILRYLKQCTK
LGLKLCKSKSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWCARKQATVSRSSTESEYKALANATAEIMWVQTLLT
ELQVQSPPMAKLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPTGDQVADGFTKALPVRQLENFKH
NLNLGRL
>TKM1_gag#LTR/Copia 323-1213 [Kluyveromyces marxianus]
MNMPIPGANTNPDKTGGHYQTTGPSGDSSQYNPAYYFPYQLEPKPGLQSQTTTECTFGQLHNPRKTFILSKVNSPHYYDS
WVREMCQAMLEQNLGHLIPTEDNKTPETPEPAEKRYIEEIHIACVPEEKYPKWLKSSYDEGEALIDCFKEGIRRIKAEED
PEAIVLALAGLTLDYRESIPNFAKRLRKIHQRTVNAKFPMAEKIVISRALKALPERYEKVDINFTKSNDQSFNNFINILL
TTEPRMKSSNQYDNQRFYTNSERKQVDRRPNRKTVQHIGSKTVEGDLRPDSEVQEE
>DIRS-1_CB_pol#LTR/DIRS 840-2879  [Caenorhabditis briggsae]
MEAKVMEAETAREASAATNAKDMGTMPMIVNNEGKCFPERLSEAIEFWESICNVEWVLSVIEDGYKIQLNSETILPEPQG
LRPSVKRHEEFLIAEIKRLEEEGVVVRVEEEPRCVSPLHVVEQGKKKRMILDLSELNESLVPPRFKLENLKTAWPFLENA
KFAATFDFKSGYHHIKIHRDSRDLLGFSLSNPPAAPYFLFKGLPFGLSIAPWLFTKIFKVLVQKWRAEGIKIFLYLDDGL
VVGETEREVARAVRKVREDLHNAGVCVAEEKSFWVPDAKFTWLGYECDLVAKEVRGTEKRMATWWSALDELRRSLAPTVL
DRMKFLGCLASFELVAGDIGVAKARWMMQVVGENQKKKSESKLARKKKSPGEEKEIEFWRARGAELLRRNLLEVESKPDF
FLYTDASARGIGGLLKNERQDILWKMTEIGDGNFEKQSSAWRELTAVEVASARISSNLKGRVQVLVDSQAAVSVLRRGSM
KPELHSLAERVWHNLENVGESSFLWIPREKNVEADEASRNFDFDDWGIAERVFSQAQRMWGEIKVDWFADANNKKTELYF
SRYPEFGTSGVNVFEHVERAERMGLPWLVPPPVLIPQLIKIMRRRRLRGVLVAPLWKSHISYQALVDYSGRFIREVKDYI
IYEKNDCIFIPGEGSRHCEATNSKFCRSDFILAFLDFTQ
>DIRS-1_BM_pol#LTR/DIRS 1522-3390 via tfasty with DIRS-7_NV_pol, 2 frameshifts and 1 stopcodon. [Bombyx mori]
INDSTRFSGGCLRLYQNIWTLFNPPNVILKLITGVQIPFNKIPPLVLPTLDVLAKYQTPTSPLMSIEIQNLIQLRVLEPA
PLTPSFISPLFIIPKSRIIFNLKALNQYTKQSHFHLFYHQQVLKFLQHGDWMAKLDLSQAYYHLPIKKQHRRFLRISYQG
RLHQMTCLPFGLAAAPRIFASVTNWTAEVLRKKGLRLVVYLDDYLLVHQDRNVLESQVKMAIRFLSSLGWSINIKKSVVT
PTSLINFLGIVWDTKSNTKSLPLEKIQKIRQNLLVRLAAGSWNLKQAQRLLGYLNFATFVTHRGRLHCRVLQYHSNKLRR
YPHLPKQYPDEVRTELDWWLVNISQKTPIHPQRMATNHVITDASDIQWGALVNNETVEGPWKLHQRKxHCNMKEMYAVIA
AITSRATLLQHSTVILQSDNRTVVSYIKNEGGTRSRQLLDLTRKLLTLVDHLNVVLLPHHLPGLYNTEADHLSRNRGGSE
WHLTEEATTRLFNLWGTPDVDLFASRTAHVVTNYVTQDLLDSNAYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASG
RYILVAPKWKKPFWRPDLKTRALRRPVKLRDLSTSLVDTMTMLPPAHVSNLHLEAWLILGGTR
>DIRS-1_CTe_gag#LTR/DIRS 759-1544 Fragment? No matches yet. [Capitella teleta]
MSVGRDAPTATEKEAAIWTMFRGDQKPRKIARDKTERLYRQTEGPFAPPSYPTQLPVSQQQMQADRAARAQQAQWGMCAL
AVTRGLAKLEEAVQELSGAASTEDVHRVGAVIASDVTIPFAHAVRMMASVFNEHSIQRRGNIARAVSDPHLSRWLEESEA
SFTDLFAGNTDAALEASRARRTDGLLAVARQATTSRPASSKGNRSALYAPRPRNQVSRDPGHRRPFLEGRSFPRGGRARP
FSRPSRGRGSHAPSTTNTARNA
>DIRS-3_SP_yr#LTR/DIRS 3614-4600 [Strongylocentrotus purpuratus]
SPLLQAWRAHCDLHGLTERTTDIIGASWRESTKKQYNIYISKWKIFCEQHKLPWMQAKAKDILEFFSDLFYRHNASYSAI
NTARSALASVMSLDDSNYTIGSHPIISKYMKGVFQLRTPTPRYAQVWDVSIVLDYLRLQPANDKLPLCKLTQKLSMLLAL
TSAQRVQTLWNLNLDKMCLKTDSVEFHVDSLLKQSKPGNVGIMVKISAFPEDERLCAVHCIEQYIKLTKEIRKSERHLFI
SFRKPHKRASSQTISRWIRVVMKISGIDTDQYKSHSTRAASTSIAKKMHIPMDVILKHAGWANEKTFEKYYNKPVNTGHS
TFTQAVLHH
>DIRS-2_ACal_pol#LTR/DIRS 1531-3651 via tfasty with DIRS-1_ACal_pol, 3 stopcodons. [Aplysia californica]
IVEENPQVSEKVMNDNSSVAIDCLVEEMNAFQAGQIKDKISEWRTLTSDSQILEMVQGTKIDFSCESAQPYYCTDxSISF
TQEEMTATDKEISNLLHKKVIVETLHGQGEVVSGIFTREKQDGTFRVILNLKKLNKSLVYKKFKMETLKSALTLLSPGCF
MASIDLVSAYYSVPIAAEHKKFLKFKWKDKLFKFTCYPNGLAQAPRNFTKLTKPIFSHLHSIGHISSSYLDDSLLVGNTE
KECEKNVSDTVSLFNRLGFVVHPHKSSFKPSQRIIYLGFEIDSVTMTVYLSKEKRERVESHCRVFLRRSAHSVREVARLI
SLLVSCFPAVPFGPAHYRCLEREKVQAIKKTRGNWDSVMQLSRTALEEVKWWYRHGLSSVSPISRPDPDLVIFSDASLFA
WGAVCGNEKTGGGGAWTVEEKELHINELELLAAFLAxRSFSKGLKNAVIRIFVDNTATMACLNKMGSSKSLSLDNLSKKV
WAWCENKNLWLSAARTAGKDNVDADKESRTINIDTEWMLSASLLKSSLSVLQFKPDIDLFTSRLNKQFPKYVSYRADPDA
LSLDAFTMNWKGLKWYAFPPFSLISRVIQKVKKDEADGIIVAPCWPTQPFFPLLMxILVEKPVLLSARENLLHLPSSPDQ
KHPLHKKLRLLICKVSGKNSKVKAFLELQPTFSCPHGEMKQRRRITDTLKTGSGTRSSNKWIQFHRH
>DIRS-1_AMa_gag#LTR/DIRS 289-1284 [Allomyces macrogynus] (not sure; very GC-rich sequence, no matches, ORFs in two reading frames)
MNVNPPNDPAAVLAAARTDIAANPDGPLAQLLAAALALAGPGDGAAPPPAYQTPWPWRDAPPAPLVVDDDADGGRYTVEG
APAEILGRSALSFRGRSSDVLRHYPRPNGSVDQASRLDAALVEAASRAKTGETVKQRDDRDRKHQEYLGHVIRALVPLVH
LLHVVDHELNLDDPEHGPERIAADAGRLRTVVRDARTAAVDALKLTVIGNGSIERARRDAVIKDLKLGEVFAQRANVPST
DRALLFGPDAFREEFAELNRRRDMERVAGVAAAAAAAARPARVPGNGRGHGARGAGGYRGRRGRGRGGTCANGQRRDQPR
ADADNNRDANRV
>ZMCopia1#LTR/Copia 482-5394 via tfasty with SBCopia1 (2 frameshifts) [Zea mays]
MDANTTAATGTITPAATGSEPAHGGAPYITGLGPLRASSPLPLHRTSPPGFPAFASPTWSHRVAPSTIPTTDPPLVSTLA
SIQAAVMASRERERAASLALERERALGAALTTQMATTQRLLGHPTLADAEPPEDPHASDLDADLIAALHAQAAGLHNIRA
LVSVVLDPASSHYPRWRGQVLLTLRRFVLDDHVLVDHDAPPPRSWCLMDSVVLSWLHGTITVELQDIIRDQADTARQAWL
ALEDQFLGNRDARALHLDAQFHLFSQGDLSVGEYCRQMKGLADSLRDLGEPVADRTLVLNLLRGLSPRYGHLKALIKRSV
PFPTFHAVRNELLLEELTMANEAPTPASALYSAPTSGQPPSGGQATRPPSTGAPTRPPPAVPAAPRPTSTTDGGRRSRKG
GRGSGGSSRGGPSGRGGGHAWPSFYNPWTGTIAMWPGQAPSTPRPPAPALLTTPHYGAPPYGVPVVPQAPSALLPPGTHT
STPWSPPAGGWDSTSLAAAFSTMAMTPPPSDWVIDSGASYHTTPTAGTLSRSHPPLPSHPSSIVVGNGSTLPVTSVGASV
LPGPFYLNDVLVAPHITHNLLSVRRFTTDNSCSIEFDPSGFSVKDLATRTLLARCDSSGPLYTLQPSTAGVSPPPALVST
TSSTTWHRRLGHPGPDVMTKITSSLDLSCSRGHFEGLCHACQLGRHTRLPFTTSFSRAEQAFDLVHCDLWTSPVLSLSGY
KYYLVILDDFSHFLWTFPLRLKSDTFTTLTHFFTWVSTQFRRPVRALQCDNGREFDNNASRSFFLTHGVQLRLSCPYTSA
QNGRAERMIRTTTNMLRCLLFQASLPASYWAEALHTATHLLNRLPSKAVHHPTPHFALYGTAPSYDHLRVFGCACYPNTS
ATAPHKLSPRSTRCLFLGYSPDHKGYRCLDLTSHRIIISRHVVFDEDVFPLAGSTPPTDLDSLLESDPIPPPPSAPRLAP
LPAPRAAPTTSSAPRAAPSTPPAPRAAPSTPPAPRTAPSIPPAPRAAPSTPPAPRAAPSTPARFANPALVYHRRGHTTTS
APPDACPSTGAVRFADPAVVYHRREPAPPAAPDVPVAHSESSVYHPVAIHRDPGHVHPMVTRRAAGVTPPRRPAHPGSRY
DQHSTRASPVPSSVRTALADPHWRRAMEEEYAALLANHTWDLVPRPPGTNVVTGKWLFRHKLASDGSLDRYKARWVLRGF
TQRPGVDYDETFSPVVKFATVRAVLSLALSRDWAIHQLDVKNAFLHGTLTETVYCSQPTGFVDADRPDLVCRLNRSLYGL
KQAPRAWYSRFASYLASVGFVEAKSDTSLFIYRRGDDTVYLLLYVDDIVLTVSTADLLHRTIVALQREFAMKDLGPLHHF
LGVTAERRPQGLFLHQRQYAIDILERAGMSDCKPCTTPVDTQAKLSEDDGPPVADATSYRSLTGALQYLTFSRPDIAYAV
QQVCLHMHTPREPHLTALKRILRYLRGSLDYGLLLRPSPTTELVVYTDADWAGCPDTRRSTSGYAVFLGANLVSWAAKRQ
PVVSRSSAEAEYRAVAxNGVAEASWLRQLLHELHSPLQRATLVYCDNVSAVYLSTNPVQHQRTKHVEIDLHFVRERVAAG
DVRVLSVPTTLQFADIFTKGLPSSVFLDFRSSLNICTG
>TPA5#LTR/Copia 5-4216 [Pichia angusta]
MSPVSHFQLANPFSETWKLMSSNNYLEWKRRFEKYLLLASEHIYQYYKTGQLNVQNDVLIDESVIQECDIALKVLLLKTL
SQNVIDVLDQNVMSGFDHIRAIDKTYGNISLRGLLLRYKKMNKDSPSPLEHIRNFRMLAEDLKFIAPDLETVEVLLCLST
LNDDSLEDKLFVNKLERLSFMDLQNAYAENELRPSFAYTINQSKQMQDSKSSKKKKIICTRCQKEGHKSFECRAPAPVSK
KSLLSDETGKDDDTYGEIFVAEAFRTMGEVYTARNLPLPHIDDAYWFDSGATCHISNNRNHFSSFEKYHGYLQGLSSGCQ
IEGKGTVLLYHNGKDITLTDVYYVPEAGKNLIAFCKVFKAGGIRVDESGLFVNNKLFATYQPNRLFKCIFSPQYCAQANL
VMDSHSHQRFGHPSEKTSRKLGLPILKELCASCQFGRNTATFPKVSRTVVKAPLELLHVDVCGPFNTKGTQNERFFLTIV
DRFTHMVAVYPLQHKSQVSQLLKEYITYAENHFHRFPYKVMRVRSDNGTEFCNNQLLTFFKQKGIQHELTNTYSSYQNGV
AERMHRTLISRVRILLASSGCPDMFWPQALKFVALIINQEPSSSIHGDIPHMRWFDSQPDYTMYHPFGCQAYPLTPSVHR
SSKLSPVSTSSIFMGVSARRKAYIFYDPIADSFTESQHATFSDSHFPFLHQTRKSVGVPIFDLSESYRQQSSGILPSLPN
PSTVPILPRGISDVSSRPLSHSTSDPDYTPSDSMDYKSSDSMELVPLDHIESNLESISDPTVDISPDYSPAPSVPISSKL
IDYPVERSLIPYSQSAHDHSTVVTFAPRPECPSEPSLLPPPTSASMNPELLTPVIPAVHPRDPSESDVGPDPPRYPMRRL
NADASHALLADAASAVSSSNVPTSVTEALNSSVWSKAMQQEMEAHHLNKTWSLVPLPKGRRALGCRWVFTEKLPSHLPKA
RLVVQGFRQIEGIDYTETFSPVVRYESVRTLLALAAQKHMVIHQMDVTTAFLNGDLAEEIYMTQPIGFVHPGQDSLVCHL
QKSLYGLKQAPLCWNLKIDSLLASSGFRKIPCEFGLYISLTHPLIYVALYVDDLLILSTSQARITHTKSLLSHHFIMKDL
GTASHFLGLDIHQSLPSIALSASTYIHQMLDDYNLSACNPVSTPCDTQSWVLSDDPPLSNPTEFRSMVGKLLFAANTVRI
DIAFVVSKLSRFLQNPRKSHLAKARHVMRYLKGTADLGIVYSKDSHFKLSGFCDSDWGTDPNDRISVTGYVFILAGAPIT
WRSKKQTTVALSSTEAEYMALGDALRELLWLKQLLDQLEIKSSEPPTLYCDNTGALSLMKHPAFHPRTKHIDIRHHFIRQ
HLTSNDFISKHVSSGMNLADPLTKALDKPKFESLRLKWKFEKL
>HTLV2_pol#LTR/Delta gi|9626728|ref|NP_041003.1| pol polyprotein [Human T-lymphotropic virus 2]
HRSRPYGYTPDTRARAGKAPRHPDPRRQWANQHPVQTPPNPPTHILALPKVPRYPFLLPLRHPQQMDHHWKGRPTTMPGA
SIPPRRPQPPPIAANSHSKHHRPRTPSPTSPSGPISFKPERLQALNDLVSKALEAGHIEPYSGPGNNPVFPVKKPNGKWR
FIHDLRATNAITTTLTSPSPGPPDLTSLPTALPHLQTIDLTDAFFQIPLPKQYQPYFAFTIPQPCNYGPGTRYAWTVLPQ
GFKNSPTLFEQQLAAVLNPMRKMFPTSTIVQYMDDILLASPTNEELQQLSQLTLQALTTHGLPISQEKTQQTPGQIRFLG
QVISPNHITYESTPTIPIKSQWTLTELQVILGEIQWVSKGTPILRKHLQSLYSALHGYRDPRACITLTPQQLHALHAIQQ
ALQHNCRGRLNPALPLLGLISLSTSGTTSVIFQPKQNWPLAWLHTPHPPTSLCPWGHLLACTILTLDKYTLQHYGQLCQS
FHHNMSKQALCDFLRNSPHPSVGILIHHMGRFHNLGSQPSGPWKTLLHLPTLLQEPRLLRPIFTLSPVVLDTAPCLFSDG
SPQKAAYVLWDQTILQQDITPLPSHETHSAQKGELLALICGLRAAKPWPSLNIFLDSKYLIKYLHSLAIGAFLGTSAHQT
LQAALPPLLQGKTIYLHHVRSHTNLPDPISTFNEYTDSLILAPLVPLTPQGLHGLTHCNQRALVSFGATPREAKSLVQTC
HTCQTINSQHHMPRGYIRRGLLPNHIWQGDVTHYKYKKYKYCLHVWVDTFSGAVSVSCKKKETSCETISAVLQAISLLGK
PLHINTDNGPAFLSQEFQEFCTSYRIKHSTHIPYNPTSSGLVERTNGVIKNLLNKYLLDCPNLPLDNAIHKALWTLNQLN
VMNPSGKTRWQIHHSPPLPPIPEASTPPKPPPKWFYYKLPGLTNQRWKGPLQSLQEAAGAALLSIDGSPRWIPWRFLKKA
ACPRPDASELAEHAATDHQHHG
>DIRS1_FR_yr#LTR/DIRS 3951-5111 [Takifugu]
SVCWHPDPGNFLSAGTSFPRQGGDSSSTTGTVAAACLPVERSNLLATGLPPNVVATIESARASSTRGLYAYKWQAFEKWC
QDQNILSFQCSIVNVLTFLQELLDKGLSFSTIKVYLAAISACHVGFNGVTPGAHPLTMRFLKGVRRLRPVIKPSVPSWDL
PLVLEALCGSPFEPVESVDMKFLSLKTALLLALTSAKRVGDLHALSVHPSCTQFTPDGSKVTLRPSAAYLPKVISSNNSM
AFELLSFSPPPFASEEQRRLHSLCPVRTLRTYMDRTQGVRLCDQLFVCYANPAKGKALSKQRLSRWIVEAISLAYNSKGL
PLPPGVRAHSTRGMATSWALFKGVSLSDICSAASWSSPHTFVRFYRLDVTTPSVAHSVLSAGSTIH
>STLV-3_pol#LTR/Delta gi|18071206|ref|NP_542258.1| polymerase [Primate T-lymphotropic virus 3]
PTLKCSPCPNTQAYWVRTSSPAPGGLAVPVKPERLQALTDLVSRALEAKHIEPYQGPGNNPIFPVKKPNGKWRFIHDLRA
TNSLTRDLASPSPGPPDLTSLPQDLPHLRTIDLTDAFFQIPLPAVFQPYFAFTLPQPNNHGPGTRYSWRVLPQGFKNSPT
LFEQQLSHILAPVRKAFPNSLIIQYMDDILLASPALRELTALTDKVTNALTKEGLPMSLEKTQATPGSIHFLGQVISPDC
ITYETLPSIHVKSIWSLAELQSMLGELQWVSKGTPVLRSSLHQLYLALRGHRDPRDTIELTSTQVQALKIIQKALALNCR
SRLVSQLPILALIILRPTGTTAVLFQTKQKWPLVWLHTPHPATSLRPWGQLLANAIITLDKYSLQHYGQICKSFHHNISN
QALTYYLHTSDQSSVAILLQHSHRFHNLGAQPSGPWRSLLQVPQIFQNIDVLRPPFIISPVVIDHAPCLFSDGATSKAAF
ILWDKQVIHQQVLPLPSTCSAQAGELFGLLAGLQKSKPWPALNIFLDSKFLIGHLRRMALGAFLGPSTQCDLHARLFPLL
QGKTVYVHHVRSHTLLQDPISRLNEATDALMLAPLLPLNPTTLHQITHCNPHALRNHGATASEAHAIVQACHTCKVINPQ
GRLPQGYIRRGHAPNVIWQGDVTHLHYKRYKYCLLVWVDTYSGVVSVSCRRKETGSDCVASLLAAISILGKPHSINTDNG
TAYLSQEFQQFCSSLSIKHSTHIPYNPTSSGLVERTNGILKTLISKYLLDNHHLPLETAISKSLWTINHLNVLPSCQKTR
WQLHQAQPLPSISENTLPPRASPKWYYYKIPGLTNPRWSGPVQSLKEAAGAALIPVGGSHLWIPWRLLKRGICPRPESNA
VADPETKDHQLHG
>Copia-110_BRa#LTR/Copia 131-4195 via tfasty with Copia-62_BRa, 83.9% SW:4394, 2 frameshifts and 2 stopcodons. [Brassica rapa]
MAANNVVERAFGINNIKTHIPLILDYEDHNYDAWRELFLTHCLAFDVLGHVDGTSEPANDDDSPWKKRDGLVKLWMYGTL
AEPLFRSTFKPGGTARDIWLRIENQFRDNKEACALQLDHDLRTTEIGDLSVHEYSQKLKSLSDLLANLDAAVPDRTLVMY
LLNGLNEKYDNIINVIKHKDPFPSFESARSMLLNEETRLKRNNKTPVTNDTSSSSTVLTINTDKPQPRKNNNNRKQGYRG
RGRGGFNNQRPWYNNWAPNWNSAWQQPYVPGPMMQWPQYSPPWQQPNPRGILGAAPQRPAQANVVENMLQPTTDFAHAFT
MTIADPGAANWYMDSGATAHLASSSGILNSVLKHSTGNSVIVGNGSSIPITKTGSTSILTPSHAFSLSNVLVAPNIIKNL
ISVRRFTNENWCSVEFDPFGFSIKDLNTKMTLHRSNSTGELYSIASHHNKPATCPSAFVVASPTLWHKRLGHVHNASLSS
LISSNAFSCNKGQLPSCCEACQLGKHLKLPFYESKRIVSSAFELIHSDVWTSPVPSISGIKYYVLFLDHFSHFVWVYLLR
RKSEVFSKFTHFTSFVKTQFKSTIRSFQCDNGGEYNNNQFLNYFSSNGVDVRFSCPHTSQQNGRSEHMIRTINNTIRTLL
FQARLSPIYCVEALHTTIHLLNILPSTSIDNQIPFQKLFNKKPTYDHLRTFGCLCYPNINHSNLHKLAPRSKPSLFLGYP
TNQRGYRCLDLKTRKIIISRHVVFDETIFPAAETSQSNSAGFYQFLETEPSPMFKDILQSPLTPMLSPPSTASSPPLPLP
TVAQPPANINSSRHPMTTRSRDGTRKQKAPLSLNVSTVSPLPKSHLQALSDPNWNPAMGDEYGAMVKNKTFTLVPRPPDT
NIIRSMWLYKHKTGPDGMPRRHKARLVANGKSQQQGLDYDETFSPVVKPVTIRAVLHLALANNWEVHHLDVKNAFLHGKL
EERVFMHQPPGMADPSNPHHVxKLDKALYGLKQAPRAWNARFSTFVEKQGFVKSFSDTSLYVYNKGNDRAYLLLYVDDIL
LTASTPQLRQTLSNLLKQEFEMSDDGKLSYFLGIQATYDSKGLFLSQSSYAKDLLLRANMKDCKPISTPVDLKSKLSAED
GAKVDDPTQYRSIAGALQYLTLMRPNIQYAVHPLCLYMHDPRQPHLIAMKRVLHYLQGTLSHGLRLHKSSSTALTAYTDA
DWAGCPDTRRSTSGYCVFMGDNLISWSSKRQPTVSRSSSEAEYKGVANVVAETCWIRNLMLELKIPITSATLVYCDNVSA
TYLSNNPVKHQRTKHVEIDIHFVREKVAMGQIRVLHVPSSAQYADIFTKGLPSSLFEEFKSSLSIRAPDDxTKGG
>Copia-109_SB#LTR/Copia 21-4323 via tfasty with Copia-27_SB, 2 frameshifts. [Sorghum bicolor]
MFYSGSVSPPREPARKKYVIPQRTPEIKMSESSGNSATSSGVKENSLVWPMLTRSNYQEWAMLMQINYEAMEIWETIDPG
TNPKRSEDRQAMGALMRSVPKEMWGTLGAKKTVKEAWESVKIMRIGADRVKEVSVQKLLKEFKNIEFKEGESVEDFGRRI
TNLTANLKSLGETIDDSRVVKKFLRVAPPRLNQIVVAIEMLCDVKTMTVEDLVGRLRVAEDRCADKVEEITNKAGRLLLA
EEDWLEKHKHRFQNNQKEGGSSGGSQGKGKPSNRSDAGASGKTGGVKLTSEGTPRRKGRCRNCGIYGHWQEDCKRPKKQK
KEQKREEANMAVGGADHNAALLLAVASDVTETPVEVVHLSEDKVVLVQCPDGVWVLDTGASNHMTGSRAVLTHLNEGVKG
TVRFGDGSSVEIHGVGSMVIEGRQQEHKVLTDIYYIPKLKSNIVSLGQLEEKGFEVSLKNGRCNVFDQGGNNLLISAPRT
ANRLYTYKFSIGSPVCLLSKLDDDAWKWHARFGHLNFRSLRELGRKAMVSGMPTVDRVEQVCDGCTLGKQHRKPFPSVSQ
FRAKKGLELFHTDLCGQISPPTPGGKSYFLLVVDDHSRYMWVEMLKFKSEALSYFKKIKIRAETELDSKLKAIRTDRKGE
FNSNQFSVFCNEFGIRHYTTTPYTPQQNGVVERRNQTVVEMARCMMKAKSVPACYWGEAVMIAVYVLNRCSKTPTRSLDG
VTPYEAWHGKKPRVDHLKIFGCIGHVKRIGPGISKLSDRSQRMVFIGYEDGTKGYRMLEPLSKTLHISRDVIFEESQAWN
WNIQSVPDQPEHFVVEYPITDGGPTIEEPVAVSAPAGPVANSPVQFQPQPSPDHSQVLGSPHTPSTSASHVAGQNQWVTP
PAGQSADSEGVPLRYRTLTDLFDSTEELQDFEYSGVCFLAADEPASVEQALEETCWKNAMEAELQSIRDNNTWSLSELPK
GHKAIGLKWVFKVKKDAAGNIVKHKARLVAKGYAQKQGVDYDEVFAPVARIETVRILLALAAHGDWELHHMDVKSAFLNG
DLQEHVYVHQPPGFADAAQSGKVLKLNKALYGLKQAPRAWNSRLDQELKAMGFQKSIVEHAVYKRGTGDALLLIGVYVDD
LIICGPNSLNIKKFEDQMKRIFSMGDLGLLSYYLGMEVKQGRNQITICQKAYAEKIVEMCNMSRCNPVDTPMEQRVKLTT
SKPGTELDVTRYRSLIGSLRYLVNTRPDLAYAVGIASRFMEAPGREHWAVVKRIVRYIAGTLDYGCKYMKGEGMGLNLLG
YTDSDCSGDLVHRKSTSGIIFYLGTNLVTWASQKQKVVALSSCEAEYIAAALGACQGVWLSRLIADLVGGEAQKFRLLMD
NQSAIELAKNPVFHERSKHIDTRFHYIRDCIERNMVDVEHVGTEDQVADILTKPLGRVKFVEFRLKLGVVPVKQD
>Copia-111_SB#LTR/Copia 120-4380 via tfasty with Copia-21_SB, 1 frameshift and 4 stopcodons. [Sorghum bicolor]
MGTSGEKEAMEKAFNQAAGNLVWPMLTRSNYQEWASHIQCNLEAMYLWDAVSEDPVERRRDRLALGAMLRVVPTEMHAML
LNKKSMKDAWEAIKSMRLGADRVKAVNAQKLLAEFESITFKQGEAIEDFAMRITKLKTNLEGLGDKSVDDKRIVKKFLRV
VPAMYNQVAVTIEMFCDLDTLTIEELIGRLRAAEDCFDPAIGKITEKSANLLMTEEEWSIKNKSRLISYSSSSSGQKKDG
VRWVRKDKSGECSGDARDTGGRHPSTGTPKRKGRCNKCKIYGHYARECRTKMKEEKQGDTAHHAVGDVETGALLVAQVCS
VVKAPSVSAxKVFLNxERVFPTEYHEGAWILDTGATNHMTGCTEALVSLDKSVRGAVRFGDGSTVEIQGVGAVALTGKHD
EHRVLTDVYFIPSLKCNIVSLGQLEEAVCRVEIDNGIMKVFEKRQAADRQQGVLIRAERKNRLYVLKVKLASPVCLITKM
DETAWLWHARYGHLNFRALQELGSKEMVVGLPRVRAVEQVCDGCALGKQHRSPFPRASPYRAKEALKLVHADLCGQILPP
TPGGKSYFLLVVDDMSRYMWLELLATKDEAFVCFKKIKAAAEMESGRRLKAFRTDCGGEFNSGMFVTFCNDNGIKHNRTT
PYTPQQNGVVERRNQTVVEMARCLLKSMNVPGKFWGEAVSTAVYLLNRAPTKSLNGKTPYEAWFGRKPGVKHLRTFGCTA
HAKKLGPSLTKLTDRAIPGIFLGYESDSKGYRVFDPVKGRLMISRDVLFDEKKVWNWGESEQGDEATTVPMHTFTVELPD
TIPGPTIDQDAELGAEASGNGAAPASPVSIPPQGSTGNDAGTPPATPIAGQGGSLPPGQIQFVSPPTGASADSAGNPYRY
RTVFDLLESTDEVSTKEYSGLCLVAAEEPTSVEEAMAEPCWREAMQAEMQAIEANRTWEISELPMKQKAIGPKWVFKVKK
DPDGNILKHKARLVAKGYAQVQGVDFHEVFAPVARIETVRVILAFAAQSGWQVHHMDVKSAFHNGDLTEQVFVKQPPGFI
IGMGHEVLKLRKALYGLRQAPRAWNFKLDQELLALGFVRSKLEHAVYRRGNNNSFLLVGVYVDDLVISGPNISDIRQFKQ
EMMRRFSMSDLGLLSYYLGIEVKQGPEGITLSQCAYAKKILESAGMLNCNPTATPMEARLKLNKRIEDEVVRPTAYRSII
xSLRYIVNTRPDLAYSVDVVSRFMEAPTKAHWGAVKQILRYLKGTIDYGCRYSKGTELKPVLLGFSDSDFAGDIQDRKST
TGIVYFLGGNLITWASQKQKIVTLSSCEAEYVAAAAACQGVWLSRLIGDLLGTKEAPVKLFMDNKSAIALSKNPVHHDRS
KHIDTKFHFIRECVEEGKVEVEHVGTTDQLADIFTKALARARFQEMRRAIGVDRVHQAxG
>Copia-120_AA#LTR/Copia 110-4005 via tfasty with Copia2_AG, 1 frameshift and 1 stopcodon. [Aedes aegypti]
MEWARIVKLNNSNYQAWSFSVKALLRREQLWKHVDPGTPPEPVTDAWSDGDERTLATIHLTVDESQYALIRGKTTAKDTW
AALKAHHERATLGQRVTLLRQITNQNFKVGDDMEAYLAVIEKQYARLENSGFEMQECLKVALILRGLPESFNPLTTALEA
RNEDELTLDLVKVKLLDEAEKLRKRSGSDEQVLRTGGTSASQKSVVCYHCGKPGHRKRNCKAYLAECGGNADPKREKAKA
KTVRENDAKSFTFMVRSGEHDASAWVVDSGATSHLANNRNSFVRLDESVRPEISTAGGRVLRTAGVGDCEIECVRYEQKV
SVTLTAFCPAPKDNLISVSKLAEKGVRAEFDAEQCRLVSREYCDADAWSVLxTFEESLLVSDKQHNTDCLHTWHRRLGHR
DPDAIGEVERRGLASGMKIKPCGIRMTCESCVEGKMARPPFPQAAEKKSKAVLDIVHSDVCGPMTTSPGGCRYYMTMIDD
HSRYTVVYFLKEKSEVIEKIREYVRFTETQFGRKPKVIRSDRGGEYTSNALRKFYAEEGIKAEFTAGYAPQQNGVAERRN
RTLNEMGLCMLLDAGLPRRFWAEAVNTAAYIQNRLPSSAIGSTPHEIWFGTKPDLQHLKVFGCSAYVWTPPQKRKKFEEK
ATKMTFVGYASDSKAYRLLNTSTGQIVISRDVRFLELDDEDKNVKDGTVRSLPGECPNEDEQVAVRLYDCGQNAGRCDDS
QDEEEFFGFDEDNDDPNEAVPVQEERVAVPVARDHLRRSQRENFGVPPGRYTDTIGLAVNTCTEPSTYREAIESQDSEKW
KAAMDEEMASLRDNETWTLTKAPQRGNVVGCKWVFKCKPDESGKTVRYKARLVAQGFSQKYGTDYDQVFAPVVKQITFRT
VPTIASKRQMLDKHIDIKTAYLYGVLQEEIHMKQPPGYSNGDPNTVCLLKRSLYGLKQAARVWNQRIDAALKSMGFHQSS
ADPCLYLRIANGMYSYILIYVDDIVVVCRTEQEYQKLVAVLSKSFKIVELGDLTFFLGIHVRRDADRFFLNQKSYVRKLL
SRFNMVNCKASRVPMASGFVQQKEEDSDSLADGQQYQSLIGALLYIAVNTRPDIAISTSILGRRVTKPTTADWNEAKRVL
RYLKGTENYELHLGGGDNLQVECFVDADWAGEVDNRKSNTGYIFKFGGGLVGWGSRKQTCVSLSSTEAEYIALAECLQEL
QWVRRLVDDLGEQLALPIVVNEDNQSCIALVAADRISRKSKHIDTKYCFVKDLASAGIVSIRYCPTEQMEADLLTKPLGA
VKLQQLREAIGILPHDVEE
>Copia-114_SB#LTR/Copia 51-4400 via tfasty with Copia-41_SB, 3 stopcodons. [Sorghum bicolor]
MSERGSGGGRGDRIPYPELTASNYASWSIRVQAIMEDQGVWEVVEPSGEAPTGATALAAAKAKDIKAKAHLLQCLPDDLL
MQVADKKTGKEVWDSLKARYVGEERVKDARLQTLKSEFDNLKMKENESVDSYAGKLSTMAVKFASLGGSLDDAALVKKMF
DTIPERFIHVVAGIEQFFDLKKIAFDEAVGRLKAFKERIRRGSSGPMKTEDGQVLLTQAEWEARQKQASGESSGKSSGGR
GRGRGRGGGRAGRGDGGRDGSVKRDKSHVKCFKCHEKGHYANRCPGTDKNADKKKEEAHHVKAVEYEPTVLLAETAMPCK
LEQTLSEELLSDDRQLTLNEVKICPELHYTSDGVSYGDVWYLDNGASNHMTGDREKFREIDPTVAGKVTFGDGSSVEIKG
KGSIVFQGQSRDQWVLYDVYYIPKLKSNLVSSGQLTEIGHRVLMDDNLIEVAQKNPEKMIMRVQRSVNRLYKVELKTANP
VSLLANVNDVSWLWHGRLGHVNFQSLKMLVDKEMAGGIPQIDHPDQVCQSCLVAKQTRCSFPQVSRWRADEPLELIHIDL
CGPITPETEGKSKYFMLMVDDCIRWMTVSILKTKDQAVEAFAKFKAEAENTLGYKVKCVRSDRGGEFLAAAFKEIYENAG
IKRQLTAPFTPQQNGVVERRNRTVMEMARSIMKSMRVPGRFWGEAVRHSVHLLNRLPTRPMGSRTPFEAWSGRKPxLGHM
RVFGCKAHVRTAKAHLSKLEDRSTPMVYFGVEEGSKAHRLYNPQTRKIVVSRDVVFEENVPWNxSAEFGESSEFAVEEND
GESTQQYWGGNYGGDNHIDEPQDVSGGAPEQDGDANDGDNQELHHFDNFFENGEDSMQQNSGTQSGTVDNQVSVGESSEN
VETISDQVLSDDNMDIDHDDGPVRYRSIYEVYEEAAEVDLASDSDVEVNALLTVMEEPTCYQEAADDENWRAAMDSELQS
IHKNKTWSLVKLPVGHKSIGLKWVFKLKRNAEGEIVKHKARLVAKGYVQKHGVDYDEVFAPVARLDTVRLLLAMAANWGW
EVHHLDVKTAFLNGDLVEDVYVSQPDGYAGKGKEKLVYKLSKALYGLKxAPRAWNLKLDSCLKKLGFKKCASEAAVYTRG
VGKCRLILGVYVDDLIVTGGEPAEIATFKKQMTSEFEMSDLGLLSFYLGIEVKQENDCITVKQTSYAKKVLSRFGMTDCN
STKVPINPGVVLHEDKQGTAVDATEYRRIVGCLRYLLHTRPDLAFSVGMASRFMERPTTLHLNVVKQILRYLQGTLNYGL
VYTREEKEETLIGYSDSDHGGDREHRRSTGGMAFYLNGGLITWCSHKEKTVALSSCEAEFMAATAAAMQAMWLRTLLSEL
TKKKMQCVTIYVDNKSAIQLMKNPMFHGRSKHIEIKFHYITECVEKGQIAVKWIGTSEQKADSLTKGMAVTKLGEMRHML
GVRELAEHQA
>Copia-107_AA#LTR/Copia 187-4143 via tfasty with Copia-29_CQ, 3 frameshifts. After removal of a hairpin insertion (probably a DNA transposon) at pos 2190-2887 [Aedes aegypti]
MADPGRFSIAKLGNNNYAAWKFQMQMFLVREELWNVVSEATPAAPIPDAWHKADKKALATIALSIEQSQYPLIKDCSTAK
DMWEALKQYHEKTTAASQLSLLIRLCDAKVGEEGDVEKHLLDMDVLFGQLQSAGLVLDEKLQIAMVLRSMPESYHFLAST
LEARPDQDVTMGLVRSKLLDEYRKRAERKGPPTGEEQVLKAEANKQKVCFFCNKPGHYKRDCRKFLALKEKRYDGESAGS
KNAARKKKQAKQAKETTCDAVSFSARELGRSVAGKVKASSWTIDSGASCHMTSCEEFFGKLEESPVTTVVMADGNRAKSS
GVGCGTIRTVDGRGKPMNVQLNNVLFVPDLDGGLLSVSKIVENGFDVKFGQNGAEIVDSTGKIVALGEMDGGLYILKEAG
HKALAAGQCHTVNCQHTWHRRLGHRDSTVLDRIRKEDLVAGVKVIDCGSRAVCECCLEGKMARQPFPHQAERRTTRPLQL
VHTDLCGPMQNVTPGGNKYFMAIIDDFSRYIVLYLLKDKSEATACIKNYVRFTENQFGRKPALIRSDRGGEFVNKELEQF
YRSEGIQSQLTAGYSPQQNGVAERRNRYLKEMSVCMLLDAGLEKCFWGEAIATAAFIQNRLPSRSVSKTPYELWTGRKPD
LGNLKVFGCEAYVHVPDVKRSKLDSKADTSTRLVGRKPRFIIKTSTKKLVFVGYDCKAKAYRFLDKAKRRITISRDARFL
EVGSEMQEEKVSVVPDPETKLEADIEKQQEVVQLESAPENESDSEEDWNSIADESEFEGFYSDIDNEFEGEDLNPAGSSS
VREQRVRQRRRPRRFDDFVVGAAKVVDHVPSTYMEAVNCQDKERWIEAMNAEYNSHQTRGTWTLVPPPLNHPIIGSKWVF
QRKKDTSGQTVRYKARFVAQGYSQQYGVDFSDVFAPVAMQSTLRVLLAIAGQRKLEVRHADVKSAYLNGKLEEDVYVRQP
IGFEEPGKEEHVCKLHKSYGLKQSARVWNTTVAVKLGFHQSLSDPCLYETMASGEWIYLLIYVDDMILVCKEAEQITIVG
RSYSVSRPTQRALGARRWLERRRRFGLDGAKKSSIPLDVGYFKQIESDVLPDNKQFHSLVGALLFIASNTRPEIAAAVSI
LSRRTSAPTQRDWTELKRDVRYLIGTEDYELKLGVQQTGDMVLAGYSDADWAGDRSDRKSTSSFVFFFGGAPVVWASRKQ
GCVTTSTTEAEYLALSDAAQEVIWLRRLLGELGEQQRRPTIINEDNRSCIDFVALDRLNKRSKHIDTKYHHAKDLCAKGV
IQLRYCSTSEMIADIFTKPLGPNKIKYFTKALGLVGLN
>Copia-97_SB#LTR/Copia 65-4582 via tfasty with Copia-11_SB, 2 frameshifts. [Sorghum bicolor]
ISTSAEHVARIKAARLKAAEETAALAVQAAQQAAAAAEAAARTAQELRAEIAAEKGEEEEEEEEEDLRSQRTPSRDRRRS
QSPLRNRRRRGGGRYESPQGRVVYRDSGSSTSWPMLDKTNYYEWSQTMKLRMQARDLWEDVEGGPVQYRDDRRALEVIVA
SVPKELGLPLLDKATAKEAWDAIAVTRIGVDRVRRATLQRLRREWENVDVKPGEPVEDFALRLSTLHQQLVLHGDRDIDE
KRVVEKFLRTVPAKYAQIVVAIEQFLDFKALSLEEVTGRLKAVDEREAQAVTEPVSINGKLLYTEEQWRARLKKEKQGTE
EAGGSGFKNQHGGGGGGGRGGGRGRGRGAGRGGGRGEGKGAGRVGPNTCLNCHQEGHWARECPQPRRDGAERGGGGGNRG
GRGGRNRRGGRGGGNQAGQQGDHEGRVQFAAYEEDAALFLSHGSIEMEQSTPELNHTMQRAELFEPRARAYLGADDEEMA
GGWYLDSGATHHMTGRRDLFSDLNTDVQGTVRFGDASKVEIKGAGSIVFEAKTGEHRVLHGVYFIPALKNSIMSLGQLDE
NGSKVVIDDGVLRIWERSSGRLLAKVRRGANRLYVLHMKTAQPVCLAARRDEEAWQWHERFGHMNRVASSTTTYRAQDHL
ELVHGDLCGPVTPATSAGNRYILLLVDDATRFMWAVLLPSKDAAADAIKKVKAAAEVESGRKLKVLRTDNGGEFTVAEFA
AYCANEGVKRHYSAPHSPQQNGVVERRNQTVVAMARALLKQRQMPAKFWGEAVMTAVHILNRSPTKALGDVTPYEAWHGR
APTVGHLKVFGCVAYTRRLSQLKLDDRGEAGVFIGYAEGAKAYRIFDPTSQRVRISRDVVFDEGRGWDWTSPAAGTSGAA
GSDFVVDFPWEEEVPGAGGSVQSHSSPQPHSASPEASPTAESVLDAGEEVSETPRTSSPPPAPASPQVEHVTPLENDEER
LDAYHNDEQLRYRTIDGILGGEQEAPLPTQRLFTELHLTHSGEPISYAEAKDDPAWQAAMKEELRAVERNGTWELVSPRA
GHRPISLKWVYKLKKDEKGDVIKHKARLVARGFVQQEGVDYEDVFAPVARMESVRLLLALAAQEGWTVHHMDVKSAFLNG
ELKEEVYVQQPPGFAIPGEESKVYRLHKALYGLKQAPRAWNAKLDSTLKEMGFKQSKHEAAIYRKGSEGSVLLVGVYVDD
LIITGAVKDEVKAFKERMRSTFEMNDLGLLSFYLGIEVQQDKNGTTMRQTHYAKKILELGGMSDCNPAATPMEERLKLSK
HSIAKEVDPTQYRRLVGSLRYLVHTRPDLAFSVGYVSRFLEKPTTEHQQAVKRVLRYLAGTLDYGLQFKRAPNSARFVGY
CDSDLAGDIDSSKSTTGCLFFFGNSLVSWQSIKQRVVALSSCEAEYVAMTSATQALWLSRLLADLLGRKVETVELRVDNK
SAIALAKNPVFHDRSKHIRVKEHFIRYCIEEGSIKTEYIPTADQFADILTKALGKAKLEDMRSRIG
>Copia-96_BRa#LTR/Copia 123-4202  [Brassica rapa]
MKKSKVKIEVEKFDGKGDFGMWKFKMQMQLENADLDSVLNEEDTSSTSETDKDGDKETKPGTGVLTRKEMDKRAKNMICA
SLGNLVLRKVMKQTTALGVWKALEKDYQTKTLPNRIYLKQRFASFKMEEHRSIEENLDGFLRLVDDLESLNITISDEDQA
IQVLSSLPKQFDSLVHTLKYGNGKETLTLQEVTSSAYAKEVELKEAGLIGKTKSNAEGLIAERGRSESKPQGKWKGRSKS
RNRSKSRPRGSGKPRECWTCGKEGHFKKDCPDKKNWKSNESVNVAHDKEQPMILTASAHDSMKEWVMDSGCTFHITPERE
VLFDFKEVDGGKVLLGNNTQCEVKGIGKIKIINSEGAQVILSDVRYMPTMGRNLISYGQLEKNGCKYEGENFKVTFYREG
KKVLSGKYQDGLYYLQGSVIKGEVSVARAETNLTNRWHSRLGHMSLKNMNLLVKGGYLNPKEVHTLDFCEKCVFGKAHKQ
SFPEGRHTSKEKLDYVHSDLWGSVSNEPSLSGCRYFLTFIDDYSRKVWIRFLRSKDEVYENFSEWKVLVENTTKKRLKYL
RTDNGLEFCNVRMDKLCSDSGVKRHKTCTYTPQQNGVAERMNRTIAEKIRCMLAESGLGKSFWAEAACTAVYLINRSPNA
ALKFKIPEELWTESRVDYSHLRRFGCVAYVPITQDKMSPRAVKGVFVGYPQGVKGYRVWIPEDGKCSNSRNVVFDEDKLY
HDSEKKIEKPKKPKKVTFRTELIQGPSTQGFTSQGEADSENAESIGQGGEDSEQESSKSSRETDEDSEGEDLEQTEHIDL
DGYVLARDRERRVIRPPSRYEDGDSVIAYALACATIIELDEPRTVAEAKRSKHWKKWKEAMTEEKLSLDKNDTFTLVPRP
EKQRVIGCKWIYKYKEGIPGIEDPRFKARLVGKGYAQVEGIDYNEIFAPVVKHVSIRIMLSIVVNYDLELEQLDVKTAFL
HGVLDEKIYMEQPEEFIEKGKEEMVCLLKKSLYGLKQSPRQWNQKFNEFMMSQGFTRCSKDPCVYTKGTTVEDMIYLLLY
VDDMLVAARDTGKINCLKKNLNKMFEMKDLGPASRILGMDIKRNRKNGVLKLSQERYIKQVLRTFNMEESKAVVTPSNSL
FKLRSLRPEEIEAERDAMDTVPYASAVGSLMYAMVGSRPDLGYAIGVVSRFMANPGRSHWEAVKWILRYLNGASNVCLTF
TKTEEFDIEGFSDSDYSADLDKRRSVSAYVFRVGGNTVSWRSCLQQVVALSTTEAEYMALAEATKEGIWLLSMCEELGFK
TDSFKLNCDSQSAICLAKNSVHHDRTKHIARKYHFIRDIVEQGSVKVQKVHTTENAADMLTKCLPGKSFEKCLGLLKVIR
>Copia-97_STu#LTR/Copia 244-4905 via tfasty with Copia-74_ST, 79.9% SW:4886, 3 frameshifts. [Solanum tuberosum]
VSSEDLSSPLYMHPSDNPGASLVQTPFDGVGYRSWKRSVLRVLSVKNKLGFINGDCKRPDPGTSQFRQWGRCDDMVTSWI
LNSLSKEIAESVEYVFDSCELWKELEDRYDQTNGAKLYQVQREINELSQGTLDITTYYTRMKRLWEELSTLHVKTQCNCN
CTCGAKDNMFKVEQDRRLIQFLMGLNEVYTVVRGNILMMNPLPSLAQTFSLLVQDEKQREIKPSAQMFMESASLNASSSG
KKGMESAAFNTNGSAGAGTSRSPRPNHSSTGNYNTNFRTNYSQTSSYSGNRPRMICDYCKRPGHTREKCYKLHGYPQTNN
NPQGNNYQNSNQNGYRGNNQNPRFNRGKGLMADVQVVAVQDEEDHGGTHADTGHQLTREQYAQFVELLQQFQAEKDNAKH
MDNGSVNFAGMIACTSSIDFGKLSCRCSHSKIDSWILDSGASNHMTFDITFLTNITYLPCPLLITLPNGYKVKVVKIGSV
ILAPDIVLHEVLYVPSFKYNLVSINCLSKSMPKSAVYFSESSCILQAPSMKRPLVIGEAKDGLYFLCSKCLMKPVHSGAA
CTASAASNSGYLSRQDVFNSKSNLLSFPVPSCKHSTRPHVCASLNKTPDISASFMTHTCDDVNVLWHNRLGHVPFVKMRE
IKSIPESFSAKQPFLCNICPMARQERLPFPHSTHTSTKIFQLLHIDLWGPYHMVTHDKRRYFITIVDDYSRCTWTQLLTC
KSNTLAVIKSFLSMIENQFNTCVQTIRTDNGLEFVNTETSTFLKAKGIIHERTCPYTPQQNGVVERKHKYLLETARALLF
QSKLPLKYWGECVLCATYIINRLPTSHVKGKSPYELLYETKPTYSHMKTFGCLCYPTLPKTHRDKFQARTTPHIFIGYPF
GTKGYKVLSLATRKIHISRDVVFKENIFPFAVLPDVSSFPSVLHSVPFIDTLHDNIESQTVQHVENNVVGASDSPPHNSP
NNVTNCHLSLPFSPLHPEPTISNRPSRPHRLPAYLHDYVLPNNMTKQLQNSNISLNTAFSKHQHVPSEVLALESQTLVRN
VSNDDEPSSYGEAAMNPAWQQAMTQEFEALHTNHTWDLVSLPSGKKAIGCRWVYKVKHKADGTIERFKARLVVKGYTQEA
GVDYTETFSPVIKMTTVRALLATAVKKGWDIFQLDVNNAFLHGDLHEEVYMEVPPGLAVHKPGMVCRLNKSLYGLKQASR
QWYAKLTEALYSKGYTHSLNDYSLFHKKSETSTIFVAVYVDDVILTGTSVSEIKELKAFLHDKFKIKDLGRLHYFLGMEV
LYKDDGLIISQRKFVLDMLKGYKVASMSSCTSPLDPAVKLQAKEGTPLTEPLFYRKLIGKLNFLTNTRMDISYSVQHLSQ
FMQDPREPHLQAAFHILRYLKADPTLGIFMSKEQSYNVKAYCDSDWAACPDTRKSVSGYIVLLGNSPLSWKSKKQETISL
SSAEAEYRALRKVAGELVWLSRLLTELTLPLPAPIEVYCDSQSALHIARNPVFHERTKHIEVDCHFVRNLLQTGLISLHH
ISSDNQLADILTKTLTGIKHSTALSKLSVFSTPPT
>Copia-101_AA#LTR/Copia 317-4209 via tfasty with Copia-112_AA, 1 frameshift. [Aedes aegypti]
MSEKFLFARLNNQNFPVWKTRMEMYLKREELWKVIRDAAPEPVSDDWTKSDEKALAMIVLGVEDSQLNLVRGVATAVEAW
NKLKDFHEKTSMTSRVSLLRRICSLNMCEGDNIEKHLYELEELFDKLACAGQEMEMPLKIAMIYRSLPESYGSLVTALEG
RPDADQTMELVKQKLIDEHQRRQERSGDAGENAMKMYSRKKKSDKVCFQCGKPGHFRRNCPQPKSGPSGSDVKRDSKPKS
GSAKAKQAEESDSAICFVAGNKCSGPWIVDSGCSSHMTNDKSFFDKLDTSVKVKVILADGSETMSGGIGEGTVKCVSGEN
SLVDIPFKDVLYVPALDSGLISVRKLVKRGLKVEFSGSRCEILSAQGKIVAVAEPRGNLFALKVAEEARLGKEARHLQNC
QHTWHRRFGHRDPAALDEIQRKELSDDFKIQDCGIRQVCQPCLEGKSCRIPFPKTASNRTQRVLDVVHTDVCGPMANVTP
GGARYLMTIIDDHSRYTVVRLLKRKSGVADCIKKYVAHVKNMFGRAPCVIRSDGGGEYTGHDLKRYYEQEGIQAQFTAAY
SPQQNGVAERKNRSLQEMATCMLLDAGLDKKYWGEAVATAAYLQNRLPSRAVDTTPYERWFGRKPSLSHMKIFGCPAFVH
IPDVKRSKLDSKAKKLLFVGYCSDRKAYRFLNTDTNEITISRDARFVELQEEKTPALGGLQSAGEEFVEVETTSSRPKKR
VDEENSEQPRDQEESEEDTFFDWDDEQEQSDQPEATRKEQKRSTRGVLPKRLEDYVVNAAMLAQEEPATYEEAVAGPEQG
LWQEAMAKEYQSLMENRTWKLVELPAGRTPISCKWVYKKKHDSVGNVSRFKARLVARGFSQKFGVDYDAVFAPVATQTTL
RILLTVAGQKKMHVHHLDVKCAYLHGKLKEEVYMQQPKGFVIPGKEKFVCKLERSLYGLKQAARVWNETISVLLKELGFT
QSVADPCLYVKRLPDGGVVYLLIYVDDMIVASTVEEEIRLIEEQLRKKISLTSLGEVKQFLGVRVTRDDEGCFSLDQSVF
IKVLAQRFGLQDAKGSSIPLDPGYYRSRVNSQPLDSNERYHSLVGALLYIAVNTRPDVAASVSILSRQISSPTETDWVEL
KRVVRYLLKTACYKLKLSAAKLDLVGFCDADWSGDPSDRKSNSGYLFQLGKATICWASRKQTSVSLSSMEAEYMALSEAC
RELVWLRLRNWRPQQKPTTVLELEFVETDRKSRRSKHIDTRVHYTKDLVDKGVVALQYCSTEEMTADILTKPLGAVKQQR
FVEAMGLVSTDGQTVPVP
>Copia-100_AA#LTR/Copia 156-3335 via tfasty with Copia-112_AA, 2 frameshifts. Two internal deletions [Aedes aegypti]
MDSISKFAKLNNQNWQTWKFRMEMLLTREELWYVIDTVKLEPETPQWTKDDKKAKATMGLCIEDNQYSLVKTAASARDFW
EQLQNYHEKVTMVRLSSEIFAAENGPAVCRSLPDSYSGLVTALEGRPDGALTVQLVKSKLLDEYKRRKECGSGSSDVKAM
KSQARTNAGAGVAEKTCFFCKKKGHLRRNCRLLQEKQNKSGEEKQKGNPKAKQATMEHSNAVLFLAGEEQQESRWVIDSG
ASRHMTNSKSLYTLFVKDDTPNVVLANGATVKSVGSGDCKLNGVSGCGGITEITLKDVLFVPTLNSSLLSVAQLTERGFT
VGFKRDGCEIVNVAGEVVAKGDRSGSLYVLRISESAMEVQCKRHSEWCQHQWHRRFGHREPSVVEKMYKEKLCNGMVLKD
CGIRMTYEPCIEGKLSRTPIPKAATKKTKEVLDLVHTDLCGPMRTPTPSGNRFLMTVIDDHSRYTVVYLLEKKSDAPDRL
MEYVRYVETLSGRKPKVVRSDGGGEYCNERLKSFFEREGIKAQYTTAYTPQQNGVAERRNRYLQEMATAMLLDAKLDKKY
WGEAVMTAAHLQNRLPSRSVDSMPFEKWFGWKPDLSYLKVFGCKAWVHVPDTKRGKFDSKARKLTFIGYSEQHKAYRFVD
LETEKVTISRDAKFVELEEEEAVSQPKTVSEPTDDEVNWMPLRNSAPADEQQDMNEAEDDSSEVDSECEEFFDMGSPQAF
QEDPLAIKIEPSEEPVEQEDVPASVSKLATRKTRGKLPKHLGDYEVGIATHAMKEPVNFNEATKSEQAKSWRSAMDDEYQ
SHMVNGTWDLVDLPPGKKVVGSRWVYKAKLNEAGEVARFKARIVAQCAVCARPDIAASASILGRKFAAPTENDWTAAKRV
IRYLKGTVDWRLKLGGVETNELVAYSDANWAGDPQTRKSMTGFATFFAGGVVSWVSRRQDCVSLSFMEAEFIALGETCQE
VLWMRRLLEDLGESQLTATVVHEDNQGCLAFAQSEKINKRSKHVETKRCFVKDLCERGTVKLKYCQTDEMRADVLTKPLG
AVKHHRFSELLGLGPPRADR
>Copia-123_AA#LTR/Copia 120-4043  [Aedes aegypti]
MADVKVSLEKLNDQNYSIWKFKMELLLVKEELLTFVTDPKPDVPTADWSLKDGKTRAMIGLAVEDSQLVHIIRKKTAKEM
WDALKQIHEASSLSSTLHVLRKLCSLRLSEEGDLPGHLNEMTDLQNRLEVIGEGLKDRVFMALILSSLPPSFGSLINVIE
NKPEQELTVDFVKSKLREEWRRRLECNGGSVRGDEKVMQSVKSNKTNNKKKFVCHYCKEEGHFRNDCPKLAKTRQEKKKS
ADSKANLAAEVPDGMEMCLMAVTTSGANRWYLDSGATSHMTSDKNLLKDVNSAKQPEICLADGKRIKSSGAGSGKLVSVT
GDGVRMDVTLKDVYHVPSLSGNLLSVSKICDLGYKVLFDRTGCEVIKDQKAVLVGERSGGLYRLKNYSQQAFVTKAEHPD
LCEHLWHRRFGHRNSEAISRIVREELGFGLKMKKCDIQCVCGICCEGKMSRIPFPKESGSKSKAVGDLVHSDLGGPMEKA
TPSGFRYYMTMVDDYSGYTVIYLLKAKSDTELKIREYCAMVKNQFGRAPRVIRTDGGGEYSSASLKAYLAENGIIHQQTA
PYSPQQNGKAERKNRYEVEMVRCLLAESGLDKKYWGEAICTANYLQNRLPTSAVEKTPYELWHGKKPSYSHLRTFGSEAY
VHVPKEKRLKLDKKAKKMIFVGYAEGRKAYRFLDPEKDWIAISRDAKFLETGVLKSERAAESEQSSPVQQSDSLEIKASA
EEAEDKVVLSLGSETPNPGSLPEAVENPESEEELEESDPSPEIARRSSRPNKGIAPRRLIEEIFAVGDVSFQDPTEPSGF
KDAMTGEKCAEWRRAMEAEMESHQVNGTWDLVKLPDGRKPVGCRWVYKLKRNAAGDVVKYKARLVAQGFSQKFGQDYDEV
FAPVTKQTTLRTLLAVASKKKLILKHFDVKTAYLYGELEEELYMKQPPGFEIKGKEALVCRLRRSIYGLKQSARCWNHRL
HSVLLELGFEQSTADPCFYTKVVNGKRVYLLIYVDDILVGSGSEAEIKKIYEALKKEFEMTDLGDLNFFLGLEITRTEGN
YGVSLEGYIDRVAERFGLRDAKEAKTPMEEGFTKGKSEGPLLEDATKYRSLVGALLYIAVCARPDIAVSASILGRSVSAP
REEDWVAAKRVVRYLKATKDWRLQYGEPAGKLIGYSDADWAGDAKTRKSTTGNIFLFAGAAISWASRLQSCVTLSSMESE
YVALSEASQEAVWLRKLLEDFGEPQLEPVEISEDNQSCIKFVESERVSRRSKHIETREAYVKELCDQRVLKLVYRPTEEM
VADALTKPLGRIKLQKFSSMLGLVAGNR
>CPSC5#LTR/Copia 35-4303 via tfasty with CPSC4A_38-4345, 1 stopcodon. [Oryza sativa]
MSYTPPGRRGGGGGGGSGNGRGSASGSGVGNCADGASLPLVPQGRDAGHTARLPILSRTNYPDWALLMRVNLQAQGLWTA
IDPGYAEYREDRAALSAILQAVPREMLRGLAKHNSAKATWDAIKTMRVSVDRVREAKEQGFRRQFEAMRFKDGETPEEFA
MRLTAVVADIRDMGGVMEDEHINKKLLRVVPKKYKPVAISLEQLLDVKTMALEELVGRLSTVDSYSDDEEASDGSKLYLT
EEQWQARVKQREQEGSSSSNKGRAGSSNQNRRGKAGDSPKGKKMATGGHGRRDISKVKCFNCDEYGHYSKQCRKPRRQRR
GEANANLVQAEEEPTLLMAHVMGVSLAGEAAIGRTPCVQEVHLTEKKVVLDREDGREEEKTSEWFLDTGATNHMTGARSA
FAELDTGVVGTVKFGDGSVIDIQGHGTVVFQCKNGDHRSLEAVYYIPKLRKNIVSVGRLDARGYDAHIWHGVFTLRYPEG
MLLAKVNRDSSYLYVLKFNLATPIYMAANGSELAWRWHARFGHLNFQALRRLAQGGMVRGLQQIDHNDQLCDGCLAGKQR
RTPFPEEAxYRAQTALELVHGDLCGPITPATPGGKKYFLLLVDDMSRHMWIRLLSAKHEASAAIKQFQAGVEKESNRKLM
ALRIDRGGEFTSVEFMEYCADTGVKRQLTAPYSPQQNGVVERRNQTVVAAARSMLKAANMPAYFWGEVVVAAVYVLNRSP
TKSLDGVTPYEAWHGRRPTVEHLRVFGCVGYVKTAKPNLRKLDDHGTRMVFIGYEQGSKAYRMYDPVARRLCVSRDVIFD
GTTFWDWGSNTDEEGDQDAYVEFTVENFTVPVQGGETHAQDAAVTPTMLATSPTSSTGTAITLPSGVEFCSSPTDASEGT
NEGPRRYRTVANTLATTAPILDFDYSDQCLMAAEEPANFLEAEQESCWRKAMLEEMDSIEGNNTWFLCDLPSSHRAIGLE
WVYKIKRDAKDAIVKYKARLVAKGYVQQHGVDFDEVFAPVARMETVRLLIAMAAHQGWEVHHMDVKSAFLNRELEKDVYV
VQPPGFVVDGKEDKVLKLKKALYGLKQAPRAWYAKLDSSLVSLNFVKSGVESAVYTQGEKNSRLVVGVYVDDLIITGASL
MEINKFKEQMQALFKMSDLGLLSYYLGMEVKQGKEGITVSQGAYAAKILDKAGMRDCNPCQTPMDARLKLSKEGGECVEE
TQFRSIIGSLRYLVNTRPDLSYSVGYVSRFMEKPTSEHWAAMKHILRYVAGTLNLGVEFRKKQHQVPQLNGYSDSDMAGD
IDDRKSTTGVLFKLGDSLISWQSQKQKVVALSSCEAEYIAAATAAVQGVWLARPIGELEGQEPGCALIKVDNKSAISLCK
NPVLHDRSKHIDTKFHFIRDCVDQKRVEVEYIRSEDQLADILTKPLGKIRFLELRGKLGLVPV
>CPR1_gag#LTR/Copia 56-1957  [Oryza sativa]
MSTSGLVDMVPLLLLDGSNYDSWSTRILDIFRTMGPQIERVVDVSISPPNDKELSFEEEEKCIHLNAQATNVLFSVLSED
VFKTIMPLEDAHLIWTTLKERYDKSKCDDVLFLEEPLEECSTSSPNCEEPQVTTFDDQDNHPTSTLSTHDYIEGNELVSK
VDDRPILPLDSNNTDNEIVILHCVVDSCISPSPKYMCEDDMDKCSTSYSTCGTNLLKGEVNERQWTSEESTSPRCSSSIS
EDHACFMGEDGDFEFDHLSKKDITIVIKLMETIKKQQACLIKKNEEIMSLTEEHKKLKDFHSSLIMRYEKLENEFACATN
SIACVASLEKQNQELKSQLEEITNKYVDLQERHDELLCSHENLVDSHAMLEVSHEVIIATVKSYEPHVQVDLTCTNPCCS
QANISPSTICDLDCVGKREKQIDHGLVCIAQPSQDNREGMVKKLEEGSTVACTKIHQRDSKSINAYTKGRNQKMIKSSIT
CFKYKKVGHHVRDCPWKKGNKLSKKDIPRIKCFKCTEVGHFASRSPCTLDEQCKTSSERQTGNKQTEKQYRSKSRLCYNC
WAKGHIGKNCPMGNIPKPSLSFDYNLLRNAKNDICATRVICSPHTSTKAIWVPKSLVTNLYGPNVVGDQNVLK
>Gypsy-26_BG#LTR/Copia 312-4619 Quite distinct amongst Copias, but clearly closer to Copia than to Gypsy. [Blumeria graminis]
MADLRNKAWVAIAIDTKLSGMEIDVKDEESLAPELINTHIVDCLEFYESSNKFDKALLNQFKEDFEGWTANIFKIANKNI
RRELKDRLKNSGVYVGGRGQVPDQLYYLLKCDECPPWPKDELELHMQKGYNFKSRCYNPNFDGQYEFILRNRQSDTSQPT
PIPKQEPSTENVSASKPGPPLQQTRPTINYPPNQRSESIQPNNYYSQVSMTTNTARLLTDLGKFYVDSDNKFGGSFYDVL
DAKLRIFYDMCDKAGVTPDLYGSAYSTMLKDKAQNFYYQHLARQNLSFDEMIEKTRSYFHTPENYQAYLMEWRSTMLKST
IEANPERNISECLEMVIDKLQKIHQGLVQNYKDSHSLPGQLISACQGVEACSIVLVRPAATFEGVASDLRSAVGMWMRSH
NNLPRVFNAMALDENSDKSNQYFVDRRYSGNGRSRSWNNNQGGNYVRGNFQGNNNRSERQQKKCFVCGKPKCWSTRHSPK
ERKQRRSDWRAYAQDMGLSEDLETFLVNYEGIDTEEHTDDESNDKDFHAWLSETRETSVSDKFEHFHTACGNINGYIITN
MLNNQSVMHALTRTDPFGKISIEPAHLFHFKSRYDAEEFQGIMPDTGAAGISTAGENQVKALQRKLPGIKINTAVAGQHS
VRFGDHPETVSLGTVTVKTPFGMIHFAIMPTNTPFLLCLSDMDRYGVYLNNIENILVHNNKKYPIVRKWGHPWLLLEDRE
KSVAWCHLTELELRQLHRRFGHPAVERLYKVLTCAGYDNLDRESLAKITKYCHQCQMHGSAPGRFRFTLHDDIEFNYRVI
IDIMYINRKPVLHAIDEATAFQAARFMTNMTAKTTWDTLRTMWVDMYVGPPDVVVTDAGTNLTAMEFRANAHAMAIKVEE
VPVEAHNSIGKVERYHHILKRAYEVISADLETTVTSDHILQMAVKAVNDTAGPNGLVPTLLVFGTYPRISELSPSSPSIS
IRANAIRKAMAEVRKLRATRQVAEGLSMRNGPNILETIQLPLQSEVKVWRENIGWTGPYILLARSNDDVTCTVDVNGKAT
NFRTVSVKPYYRNESTIIPDPLNIDDPITEPQSHEPDNDDYEEPLQKETEKRKRGRPRGSKNIPKQIAIENTPYTTWMSE
KEKHDAALALRLRREGKITTPGKPFEESDRLENNPLMFNGCILSRQPNDILLLKQKNQGEKLKLVSNTHEYVEQRARGAY
LATICQPEASFDLSAAAQYKEPLKEDIARLNKRISWQIKNVSRGLTYIPLDIDSMRLFVFVDGSFANNRDLSSQIGYVIV
LANEEAGNDSFTINGNILHWSSTKCKRVTRSILASEIYAMSNGVDVTVAINTTICNIVAQLGVPSIPVVVCTDSFSLYEC
LVKLGSTKEKRLMIDIMALRQAYENHEISDIRWIHGADNPADAMTKSNPNCALETLINDNKLTMRVQGWVKRSLET
>Lusen#LTR/Copia  266-2842 Fragment Copia3_VC near-identical, but with many frameshifts [Volvox carteri]
MTNPSPPGRNAQDALEEDAQALGYLRLSCELPVKQLLRNCQTTLAAMQLLQLQFRPASQARLSLLEPQKQLRMGDDETTA
DFIQRAEQLHSDIISAGGQWDEAAMRHAILHGLPPQYAITVEFAMYLPNLTTPQLVFMLREKENNLKAQAVKSGLVGAVG
PGRTARGVRGAAGASGAAGANDTCRYCGQPGHYVRECPVKLADVSVGLYRSNAFEQPRSTGASSSGSGNRQRDGGGGGTS
PGNNSGGDRTRERGRFRRGNGRRSGSNTAGGSSGGGGGGVSSCQNRATVLVVGGSGNSSAVVLDSGSPYHLTCDRSLLHN
YVPAGAPKQIKWGNNQLADVMGTGQLLLRTRDGESIWLRNVLHVPSSGLTLMSVDLLVTLGCSVTFGTDKAGTYLGPERG
TAAHRVLVDGKVTVSSDVTFDDDLRGLASQRAGTSFGAGPARPGSGDPVGGSTQPATPPPPVVASPPVNPAPPPRPNTRS
QRQPLHPPLATVCPANNSSGGGGDLGSPPLLNKASGSTNYAEAGDGNAGGGGNSAVQEPRSYEEAVASSQADKWRTSMDD
EILSQLSNKTWELGTPPPGARILDCRWVYKIKQEPGGEVRYKSRLVVKGFEQRAGIDYGELFAPTTRAALLRALLAVAAA
RGMTVHQMDVKTAFLNGDLAEELWMRQPPGYSNGDPSQACRLLKSVYGLKQAPRCWYEKLAAELGKLGYEPSASDPALFV
KRGSDGSIDVLVHVDDMLVAADNPQLVAAAKAGIAGCFAVRDLGEARYYLGMEIVQDRRNRSIMLTQQRYVEQLLQRHSL
ENAKPRATPLPQGTRVLPASDTQPILTDSSGYRALVGELNYLATSTRPDIAHAQTSHTL
>INGA_HV_gag#LTR/Copia 52-2587 via tfasty with COPIO_gag, 1 frameshift and 1 stopcodon. [Hordeum vulgare]
MEGEEEVNHGQPEGMDLTSVTRDDLNSAMAALNTSLTSEVKTMLKELIDGLKSSPEPALVVKPTISDSEANSSKEAAKGM
QPASPHEKDGTGTHASVPPPMTYGGPVLAPRLNPVGPPPKLVKGDFANWVFSIKSHLNHSSTNLWRIIEQGYYPHDPSNL
TPREDADNQYNHSALFILQSAVPPEDLPHLRPFTLAKDCWEHIMVLYKGSSSIQLSNYEVILDQADEFVMKEEEDPRDLY
RRVTAIAVALKDHGSKDVDDTWVKRKFLKAIMPFNKAMSSVIRQRPDFHSLSSSEVLDEFIAMSIMNETADNALARVRSK
TTSPKLALKARVMLEEEEEDEEEESFPEDTKYAYHEHMALASRQFWGNKRNSRPTFNKNNSSGFKPKQRVRTCYNCGNVS
HFVAECPYEKREDNGGKLIRKDKTKSFPIKNNFVKKPHPKGMVALEEYPSDDDDDDDTVATTTVAIATTPSQKVSLFNAP
NENHITKCLMAKGTNQVTSIIKTNITSAPSLLNCVEDSDVGELNEHDLDKFLCTIKGETKKHFVALLEQLGEATDLIESH
EETISELHGHSRDYADEIAELSSTLEEERTLRLALEESYNDDCTKMQKKLDHDVVLTRMLKSEKYALEVGRDRLKEEFDI
LDKAHKALKGAHFALKDSxSTPSKASKEISTCPPFVLIDNTCATNPYCEHVHLVEENAKLKEKLEKGLVSCRQGEKSLND
LLSTQKGVVGKEGIGLTFKSKGKIKNKSKRSLTLMDIFVKEGEGTQKVNRNKVDYGNLKKGKAAPTNTAGKLNSSYVLCC
ASDGHVYARFIGSYDEDIERAIWVPKTLVSNMKGPIKKWVPKTKP
>COPMET#LTR/Copia 993-4129 via tfasty with SC-7_766-4303, 8 frameshifts and 7 stopcodons. [Medicago truncatula]
MAAQKVSTSVTLAHFSNSTICLSHSMGSRILDSGASDHVVGNPSLIYDLSPPKISHNITLANGSKAQVTGIKLHPCPSLP
LHYVLFVPGCPFNLISISRLTRSLNCFITFTSLFIKDQSTGNQIGAGSExQGLCYLESPSPTVCNVYASPDIIHHRLGHP
SLDKLKVLVPxLSHLKSLDCESCQLGKHVRTSFHSSVNKRSKHAFDIVHFDIWGPSRMPSNLGYRYYVTFIDDFSRCTWI
TLLKDSSExSSAFKTFCLEIKTQLGKTIKVLRSDNAKEYFSTQFNSFLISHGITHQSSCPHTPQQNGVAERKHLHLVDAA
RTLLINAHAPLKFWGDAVLNCMPSSVLDNEIPHSLLFPKDPLYSVPLRVFGSACFVHDLSPGRDKLSPRAVKCVFWGYSR
VQKGYRCYCPSTHRFYVYADVTFFEDTPFFTTPSTSDSTSHSTSQVLPIPLFEPFVPTQRLPQSLTRPGFRRYGATYERR
HVTIPESAPTDFDNIVQETTPTISDDSSSILILSPNVDPPDPIIDLPIALRKDNRSTSNPHPIYNFLSYHRLSPLHHAFV
SAISTVSIPKTVKEALSHLGWRQAMIDEMNTLESSSTWKLVPIPHGKSKVGCRWVFAIKVGPDGHVDRLIARLVAKGYTQ
IYNVAKMAFVRVFLSMASMNHWPLYQLDIKNAFLHGDLEEEIYMEQPPGFISSGEYDLVFKLQKSLYGLKQSPRAWFGKF
SKVIQxFGMIRSETDHSVFFKRSSLNPVIYLVVYVDDIVITGNDQEGIKDLKQRLFSHFQTKDLGRLCYFLGIEVAWSQV
GIVISQRKYVFDILEETWMLNCKPDDTHVDPNVKLLRNQGDLYPNPRRYRRxVGRLNYLNMTRAYISFVFSVSQFFISPC
DSHWNAVVRILRYIKGSPEKGLVYSDRGHTNIVGYSDANWAGDVNDRRSTSYCVLMGGNLISWKSKKQTVVARSSTEAEY
RAMALATCELxCDNQSELYLTSNPIFHERTKHEVDCRFIREKIISGIIKTSSVSSNDxLADIFTKPLRGPQIDYICNKLD
VYAPA
>Copia-124_SB#LTR/Copia 40-4448 via tfasty with Copia-54_SB, 7 frameshifts and 2 stopcodons. [Sorghum bicolor]
MFPSSSEQSAAAFLGLGLISVTEKLTRSNFQSWRSQVLSAIRGARAAKFIQPGVQAPAEFLAPKTQDSKEDPVANPEHES
WVAKDQQVLSYLLSGLSKEILGQVSTEVTALVAWAAIEGMMFASQSRARIITTRMALSTASKGSSSIGEYYSEMKGLADD
MASAGKKIEDEELISYILTGLGDDYESIVTFVSVRAEPISVQELYTQLVAHEQRIEMRNNGGHQSSAIVAYKGGRGGGNR
SVRGCGGGGRNGNVNDGGRGGRGGFWRGGGRGHGPSWQQGVFCQVCGKEGHDAIRCFKRFDHNYKGPHQKSVSAATTNSY
GVDTNWYVDFGATDHITGELERLTVRDKYNGTEQVHVVNGSGMEINHIGHSVLHSPTGKIHLKNILHVPQASKNLVSVNR
LSRNNNVFIEFHPNHFSIKEQQTKKTLLQGKCEKGLYPLKSLNKQALGATREALGVIAASSSLWHARLGHPSAQVVQQVA
SRHKISLSRDLNNHVCNACQQGKCHQLPYTHSSVISSSPMDLVFSDVWGPAPTSVGRHDFYVSFINDHTKFVWIHLLRHK
SDVFKCFQEFQQLVERQFNKKIKSIQTDWGGEYQALNSFFKCVGIVHRVSCPHAHQQNGSVERRHRHIVEMGLTLLSHSS
MPLKFWDEAFLTAVFLINRLPSKVINNETPYERLYGHPPDYSFLRTFGCAVWPHLRPYNEHKLQFRSKRCVFLGYSNLHK
GFKCLDPSVGRVYISRDVTFDEKVFPFAELHPNAGARLRAELSLLLDSPLHTSSSTFGDATIFDHVDLSPTNLPGSSLQN
SANAGSNGAHNGEKTMGSQRYFMQEQSDNTSTDSQADLAALSPSMDPSVPPSSSGSVGSDRSSPTGTEAVADSAGGGSST
PHDDDVVPAAAGVLVQADPGYRSSGVPPTTATATGSSAAAGSSTSQSPMRPVTxAQKGISKPKAYTDGTVRWCNSVSTTT
GEPTTISEALGKKHWVEAMDKEHQALMKNETWHLVPRPKGKNVIGCKWVYRVNRKADGTIDRYKARLVAKGYKQQYGIDY
EDTFSPVVKAATIRLILSIAVSRNRSLRQLDVQNAFLHGELEEEVYIYQPPPGYIDKVQPTYVCKLDKTLYGLKQAPHAW
YARLCGKLTRLGFVASKADTSLFFYHKRCYTLFVLVYVDDIIVASSSKEATDALLRDLQAEFALKDLGDLHYFLGIEVKR
AEDGLLLSQQRYASELLAKGGMQNCKPVDTPICTSEKLSIHSGNKLGSEDWSKYRSMVGALQYLTLTRPDISFAVNKVCQ
FLHCPTTVHWTTVKRILRYVCGTCSNGLKINKSPSMLVSAFSHADWTGCIDDRRSTGGFAVFLDSNLISxCARKQATVSR
SSTEAEYKALANATTELMWVQKLLHELHITHPPAARLWCDNLGAKYLSTNPIFHARTKHIEIDFHFVQERVAQKLLDIRF
INTGDQLADGFTKPLTAVKMKAFRSNLNLCSG
>Copia-124_BRa#LTR/Copia 42-4204  [Brassica rapa]
MSDIVVATPSTAKNGGSSSIKCPMLSDTNYTVWVMRMKAAIKVHKVWEAIDPGEEDGEKNDMARALLFQSIPESLILQVG
NLEGAKEVWEAIKMRHMGADRVKEARLQTLTADFDRLKMKESDSIDTFVGKLSELASKSASLGEIIEEPKLVKKFLNSLP
RKKYIHITAALEQVLDLNKTGFEDIVGRMKAYEERICDDEEEKVEDQSQNKLMYTNADQQQNGERYDSGRGRGRGGGRYG
GRGRGRGRNNYQNGGYYQQNGGYYQQNGGGYFKQERDASKVVCFRCDKMGHFAMNCPDRLLKLQETQENEEGATQEADEL
MMHEVLYLNERNVMPSRLVDGSDRDNLWYLDNGASNHMTGNLNFFTKLDERVTGKVKFGDDSRIDIKGKGSILFLTGSGE
RKILSDVYFIPDLRSNIISLGQATESGCEIRMKEDYLYLYDRDDQLLVKAKRARNRLYKVVMEVENTRCLQLIHLRDSSK
WHARLGHVGLDNLKLMIKKSLVAGMPKFEVEKETCASCLRSKQVRKSFPQASFFRASNILELIHGDLCGPITPPTAGNNR
YVFVLIEDCSRYMWTILMKEKSEAFIKFKRFKVMIEQETCSSIKTFRSDRGGEFNSQEFQDCSESGIKRHLTAPYSPQQN
GVVERRNRTLLEMTRSILKHMEVPNWLWGEAVRHSTYLINRIATRTLVLKTPYESFKKKRPNIEHLRVFGCVGYVKITKP
HLRKLEDRSRALVHLGTEPGSKAYRLLDPATRKIVVSRDEVFDENQSWKWTETEVKETSTESYVVDFGLRDIETSSVKTE
VDTPDDKHSDSETKGEEDSEEESPVALRRSSRVSKLPSYLEDYELICEDDDEYELLCEIEVEHLLLLANEEPWSYEEARG
LKVWRDACDDEIKSIEKNNTWTLVDLPRNCKAIGLKWVFKVKKNSDGSIHKYKARLVAKGYIQKHGVDFDEVFAPVARIE
TVRLIIGIAASRGWELHHLDVKTAFLHGELKEEVYVSQPEGYMIKGSETKVYKLRKALYGLRQAPRAWNEKLNAVLRDLK
FERCLKEPSLYRKERQGHILIVAVYVDDLLVTGSSLEMIREFKREMATRFEMSDLGKLSYYLGIEVIQREGCIILSQERY
ATKILEEAGMMGCNAVHIPMDAGLRLCRSKDERSVDEKDFRRNIGCLSYLIHTRPDLAYSVGVLSRYMHDPKESHKAALK
QVLRYLQGSLAYGLIYGSGSQEGLIGYSDSSYNIDPDDGKSTTGHIFYLNGNPITWCSQKQEIVALSSCEAEFMAATETA
KQAIWLQELFGEIFKRACDRVTIRIDNKSAIALTKNPVFHGRRKHIHTRFHFIRECVEKNMVSVEHIAGAMQKADILTKA
LGRLKFKEMRDLIGVQDVSNGDFKIKGV
>Copia-131_SB#LTR/Copia 129-4404 via tfasty with Copia-21_SB, 1 frameshift and 2 stopcodons. [Sorghum bicolor]
MSSSEKDKDVMDRAFNQAAGNLIWPILTRTNYQEWASHIQCNLEGMFLWDAIEDAKVERRRDRLALGAMLRGVPTEMHSM
LLKKKNAKEAWEALKTMRLGADRVKEVNAQKLLSEFEQITFKQGETIDEFAIRILKLATDLEGLGEKIADSRVVKKFLRV
VPARYNQVAVTIEMFCDMKTLTLEELVGRLRAAEDRFEPSMEEVTEKMPKLLLSEEEWLAKHKSRMIQDGSSSSSNQKNS
GGRYVRKDKTGTRGGGEARDSGVRLTSMGTPRRNGRCNKCKKYEHFAKECKTKQKEERQEGAHHAAADIETGALMVAQVC
TVIRSPIKHTPTVFLNQERVFPGVYSEGAWILDTGATNHMTGCSEALSSLDKSVRGAVRFGDGSTVEIHGIGAVTIAGKN
NEHRVLTEVYYIPSLKCNIISLGQLEEGGHRVEIDHGVMEVFERDQGLHQQRRILIRAERKNRLYVMKIKLSSPICLLSK
MEEEAWLWHARYGHLNFRALQTLGAKAMVEGIPLIKRVEQVCDGCALGKHHRTPFPQTSTYRATDRLELVHGDLCGQISP
PTPAGKQYFLLIVDDCSRYMWLELLTHKNQALEIFQKLMKAAEVESGCCLKSFRTDRGGEFNSGAMISFCSQRGIKHSTT
TPYTPQQNSVVERRNQTVVEMARCLMKSMKVPAKFWGEAVKTAVYILNRSPMKSLNNQTPFEAWHKKKPAVRHMRTFGCM
AYAKKVGPTITKLSDRSIPGVFFGYEPGTKGYRIYDPVRDKLMISRDVIFDEKQPWNWGENSSSNTEAIEVPQVFDVQYS
DTVPDQATDSAMGSVSDSDSGFDPFSEGAPVSPAGSIPQAVNEGSLGTPPHTPISGSTGSAPPAAQIQWATPPSDGLVDS
AGRQLRYRTLSDLLESTDVVDMQYSGLCLMTADEPGSVEEAMKEACWREAMQTEMxSIEESRTWEIAELPAKxRAIGLKW
VFKVKKNPEGKIVKYKARLVAKGYAQQQGVDYEEVFAPVARIETVRVRMAQAAQGGWQIHHMDVKSAFLNGDLSETVFVQ
QPPGFVIGKGDKVLRLKKALYGLKQAPRAWNSKLDKELINLGFVRSKYEHAVYRRNNKKSFLIVGVYVDDLIISGPHVSD
IFQFKEEMKKKFNMSDLGLLSYYLGIEVKQTEEGNTLSQSSYALKILENTGMMNCNPSATPMEARLKLTKSLEDEVVNPT
AYRSIIGSLRYLINTRPDLAFSVGVVSRYMEAPSKQHWAAVKHILRYLKGTVEYGCKFERTAALKPFLLGYSDSDFAGDI
QDRKSTTGVVFFLGNSLVTWVSQKQKIVTLSSCEAEYMAAAAAACQGVWLSRLIGDLLGTKETPVKLLMDNMSAITLSKN
PVHHDRSKHIDTKFHYIRECIEQGKVEIEHVRTEEQLADIFTKALGRVRFQEMRQALGVVKVHQV
>Copia-136_SB#LTR/Copia 37-4560 via tfasty with Copia-26_SB, 1 stopcodon. [Sorghum bicolor]
MAASSSSGVFTSQQIGFIPVSEKLARNNYSMWRLQVMLAIRGAQLDEYILPTAKPPEMFLTPLKPDGTADEKKQPVPNPA
YATWISKEQTVLNFLLSSLSKEIFSQITASADSAAKAWAAIEALFASQSRARVISTRMALTTATKGSSTISEYFTKIKAL
ADEMASAGRKLEDDELVSYILTGLDLDYDPVVSAVAARVEPISVGELFTQLTSFEQRMELRGNGNNPSANMAAKGGRGGN
NSNNSRGRGTGGRGGFVRGGRGRGGGGRGSGFLQGVVCQLCGKEGHTVVKCFKRFDTSFTGPPQKSASTATTSSYGVDTN
WYVDSGATDHVTSELERLTVRDKYGGHDQVHSASGAGMEIDYIGSSILRTPTSKIHLNKILHVPKATKNLLSVHRLARDN
NAFLEFHPNYFSIKEQGTRKTLLRGRCERGLYPLKLSPCKSSQNKQVLGTSMKPSISLWHHRLGHASTPIVKQVLSRHGL
PFVSDESNKNMVCDACQQGKSHQLPYPKSTSVSTSPLDLIFSDVWGPAPSSVGRKTYYVSFIDDHSKFTWVYFLRHKSEV
FQRFHDFQQLVERQFNRKILAVQTDWGGEYQSLNSFFKRVGISHHVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPL
KFWDEAFATAVFLINRLPSRVIQGQTPFERLFTNPLDYSFLRTFGCACWPNLRPYNTRKLQFRSIQCVFLGYSDMHKGFK
CLEPSTGRVYVSRDVVFDEHVFPFARLHPNAGALLRAELSVLPDALLPSTSFGDAKLLDQCNTKTPSTNETPSHGAVFDD
TGNSNLSSGENSGSNDATLSLNDRHFMTAPSGETAGVSLEDDPIPGGATTSGLGSTLSLNDRHFMTAPSGETAGVSLEDD
PIPGGATTSGLGSTPDSPASSSVRRGGPPARNAGSSASASTAPTATPVPQPQADPPAGEQAGPSATVEIAPGSSAANAPA
APAPAQxPTTRSQHGIHKPKIYTDGTVRWGMSMEAVGSEPTSVNEALQDSRWINAMNSEYQALLKNKTWHLVPHPKGKNI
IDCKWVYKIKRRADGTVDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRLVLSIAVSRGWSLRQLDVQNAFLHGILEE
EEYMRQPPGYIDKAKPTFVCKLDKALYGLKQAPRAWHSRLSGKLQALGFKPSRADTSLFYYNRGKHAMFVLVYVDDIIVA
SSSQEATNALLKDLEKDFALKDLGNLHYFLGIEVKRNSDGLVLSQEKYARDVIKRTNMGSCKSVNTPLPSVEKISATKGD
PLGPEDSTNYRSVVGALQYLTLTRPDISFAVNRACQFLHQPTTTHWSLVKRILRYVQGTIKLGLGINKSKSMLVSAYSDA
DWAGSVDDRRSTGGFAVFLGDNLISWSARKQATVSRSSTEAEYKALADATAEMMWVQKLLTELKVQHPPAARLWCDNIGA
TYMTANPVFHARTKHIEIDFHFVRERVAQRLLEVRHVSTHDQLADGFTKSLSLSKLVDFRNNLNLVPG
>Copia-135_SB#LTR/Copia 37-4484 via tfasty with Copia-91_SB, 88.8% SW:5645, 1 frameshift and 1 stopcodon. [Sorghum bicolor]
MAFASSFSALSAALSLTTFLLPVSEKLSRTNHQSWKAQVQAALRGAQLTDWLEATAQPPVRFLPKKKPDDDKEEPVVNPE
YGSWVAKDQIVLSYLLTNLSKEILGHVNTEVTAKGAWAKIEGLFASQSRAKIISTRMALTSATKGSSTISEFFTKIKGLA
DEMAAAGRKLEDEEFVSYVLSGLDQDYDSTVSAIAARVEPISITELFTQLVSHExRLEMRNGGSQSSANLATKGNRSGGS
APRGGRGGGGPNGGGRGGSRGGFGRGNIACAPFQPGVVCQICGKEGHPAHRCFKRFNANFNGPPQKTASTATTSNYGVDT
NWYMDTGATDHITGDLERLTFRDKYHGGDQVHAANGGGMKIMHIGHSTLCSPSSTLKLKNILHVPQAQKNLLSVHRFTCD
NNCFLEFHPHHFAVKEEETRRTLLRGRCEGGLYPLCSSPSSSSNKQALGVARSATSLWHNRLGHASVPIVHRILSRHSIP
FVNDFNKGDVCNACQEGKAHQLPFARSMNISAQPFELVYSDVWGPVPASVGRQNYYVSFIDDHTKFVWIYLLRHKSEVFQ
TFRNFQSLVERQFDKKILSMQTDWGGEYQSLNSFFQRIGISHRVSCPHTHQQNGSAERKHRHIVEVGLTLLSQASMPLKF
WDEAFTHAVYLINRLPSRVINNETPFYRLYGRDPEYTDLRVFGCACWPNLRPYNTRKLQFRSKQCVFLGNSILHKGFKCL
DPKDGRVYISRDVIFDESVFPFKKLHPNAGARLRAEILLLPNDLRNPLVHHGDATVLDPNAYASTNTNDLSGGSGDEQLA
AQNLASNGDVFRSNHGFNHCHHMCLPRGDSSRVEADPPDTDRIELASGSGQQVASGQSSRSTSSPRVGTAGLSASGSSTQ
APTLLPITGSPPRAASDPGRESVPAAEHTDLTGSDASAPSAGADVTAVVSGVAPSEGSGITRPVTRLQRGIVKPKIYTDG
TIRWGMLADSVTTEPVSVEAALHDPKWIEAMDVEHQALLKNHTWQLVPRPKGKNIIGSKWVYKIKRKADGSIDRYKARLV
AKGFKQRYGIDYEDTFSPVVKAATIRLILSIAVTNGWSLRQLDVQNAFLHGVLDEEVYMDQPPGYADKSFPDYVCKLKKA
LYGLKQAPRAWYARLCGKLISLGFKSSKADTSLFYYNKGNQIIFVLVYVDDIIVASSSADATKALLLDLQRDFALKDLGD
LHYFLGIEVKRNSGGLVLSQSKYATDILSRSGMDKCKAVDTPLPSTQKLSIKDGQLLCAQDATRYRSIVGALQYLTLTRP
DISFAVNKVCQFLHAPTSTHFSAVKRILRYVRGTVKLGLHIRKSKSMMVSAFSDADWAGCVDDRRSTGGFAVFLGENLIS
WTARKQATVSRSSTEAEYKALANATAEMMWIQKLLTELRIPHQKVARLWCDNLGAKYLSANPIFHARTKHIEIDFHFVRE
RVAQKLLEVRFISSSDQLADGFTKSLSTVKLLQFRRNLNLVSG
>ERV3-3_AMi-I_2p#LTR/ERVL 3819..6029[Crocodylidae]
GGPGEGKQGTPPSSLPVGQIPGDSRGYLFAHIKIEGGEVEGWFLMDTGAEVTIFQWEHAPLNGRPVVLKGVGGGAVKGWE
IKGMVKLGEREVSTVVTATRLPLWILGTNVLSHCIIDGPRRRVMALEKEAPLPRDGPWVHSEWDVGCTKEEIQIELEKGV
RPRFVRPYPLTPEAEEGVSEMVQGLLRAGLIEPTISQWNSPLWPVRKASGKWRMVIDYREVNKRTKNWARWSAPFLKCGM
WLKGQALPILPKDKKLGPVVSTLPEMWDVAQRAGASHFTVINISNCFWAIPVRESDRDMFAFMFRGKQYRPLRLPQGWCN
SPILAHQQVRKALDSLPRVQSYVDDILIWANTPGECADISHQVLQALGMAGFRVDKRKVQWVQRSVRYLGMQLDARGLGI
LEQTKEALAQLPPPHTRKELQSQLGLMGWCRAAVPDFASLARPLYQALKVKGDPWAWGEEEEGIRQEMLRVLLDSPPLLP
PDPSTPNQIDPLLEKGWMALERQTCLGNGNLATYLGDEWPNTAHPYSLRTPAHPIKSIPYWKKAGWHLKGRPVWGMEIWQ
RIWEMSGQIRVAIRHVAGHQGDGSPEAIANAKADSLTRPSRINSLETARAAHAFAHEGGKGMWRRLRQEGRRATEAEVRQ
ALEECPACSTHRRSPYPGRGQVDVRALEPGEEWQMDFVGPLKASEGKRYILVAVDVATGWPEVWPTTEATGETVVRALKE
IEARFGKPRCLKTDNGSHFKNTVVGRWCENARVEHRFGIPYHPQGQGKVEHLNQELKRKLEVAQEVFGKGWVRQIPWVLR
ALRTRGGEWGTSPFTQMMGQPPRFQWEEEVELGLEQGDKN
>Gypsy-24_NVi_env#LTR/Gypsy 7574-9604 [Nasonia vitripennis]
MDNMIIQMIIIFTLFRNNHAIIGYDCGTTTPNITTFSLLDSGECDFHNTQVNSTSVNIELIQVAEFREVTVIQCKIEIHR
TVSSCGIFGHLIPTENGEQEYIYEISHEQCKLIHDTGIFKYDNIHTIANLKVNSTITKGIDFAGSAEGNSCSGASYADSF
GSWNKVFVHGLIKITLIQNSAKVSLKNDKLRLSSGTVCKFSEKHCIDMEGGHTFWEVLPQGECFRNSFDILFKGIATKYF
SDTNHEIVYALNSNEVTFALAIKDKIMRCNREFIRTEHPKLLIIEKSSYLNAYHFQNDKISNINSVNLDLFTYVNSKFVY
VEKHLGKQLNNLYFNLITEKCEIERKVIQNSLAIASLSPDEFAYSIMKKPGYIARIAGEVVHLIKCVPKTVKILHLKECY
NQLPVLSGNETWFLTPKTHILVKKGVQVNCNSIVPTYYRISEEWIKFTPTPTKTVSPHILKPNTKIGWTFESVETLATSG
VYSQEELDQLQQQLMFPIEKASLLNVIAREMAGEKTSENIFSENTIRNLAESTWHMLIEKLITCGSFSSVFIMILIILHI
GKLIIDTIIRGYTLHTIFGWSIHLCGAIFSSVTHLLTTLENTSSIKEQIHTNKKKNRVYEETELQEIKITAPISAPMPPP
IPSRPPHANTYTSKITIPKIQTQSKASISLFSLTPL
>Gypsy-24_DR#LTR/Gypsy 114-4508 (gypsy-23_DR too messed up to make protein) [Danio rerio]
MEDRAASVDYSDEAFTHLRDPVANLIDTFSELYLDSEEEKESKDESPQQGQEDISKIDDFPSPPPPLDFHDDQLQFENDE
HDQRIHSIEKHLADLEHRVSSFVTAETLNANLRACEDRINYYVQRELDRVQQKCYAKVEDLSRSIVDCLKRRDKQLEQQF
KAIKPIMSTPMHSSIVTSHKTSQTPSRIDATQDTTKQGTYLSPSSFPTSIKLELPTFGNADSEDPLDFIERFEEYDELRP
LHHEEMLAALSVSLKGTAKSWWKAEKSSITDWLSFKEKFLFSFLNEDHKEVAAQKLADYKQKVNESIRDYAFNYRAMSLK
INPAMSESELVQATLRNCNPRLASLLRGTVKSIDDLVRLGTQIEKDWSESRKRWSQGKEEDQKKKSSAVKGQPNRLMLID
PCLCDNVLQAPVILNHSYFNAVIDTGSTFSLLQKKLWERLKKKDEQLTRSDQTFMLANGQSQKTLGKVLWACEIYGVKHE
VTFHVMDDDSLAVPVILGLDFLKKAKVTIDFNVSRIYLPDANSSHPVCFNKTTEHAAVKFYAAQEEVGVSHDERLKLIDQ
ALENSHTTTKVKSQLKALMCDWPSVCTNKLGRTDLIKHVIKTTDDLPLRKRPYRVSKAKNDFIEEQIQELLQQKIIKPST
SPWASPVVVVEKKDGGSRLCIDYRGLNAKTFLDAYPMPQITDILDSLQGAKVFSTLDLKSGYWQLEMDPASMEKTAFVTA
SGLYEFSSLPFGLKNAAASFQRLMEQVLRDLKNKCCMVYIDDIIVYSPDVQTHLNHLEQVFHSLHKAGLTLNLKKCKFIC
ASLDYLGHTISADGVNVNSDKVEAIRTFPIPKTLKELQRFLGLAAWYHRFIPDFSSKTAPLHLLKRKDVKWNWSDECQRA
FDVIKDELTRAPVLCTPNFDLSFKVQTDASDVGLGAVLTQEVEGQERVIAYASRLLRGAEKSYSASEKECLAVVWAVEKW
HHYLEGRPFEVITDHASLVWLFQHPKPSSRLERWTIRLQGYHFTVRYRKGQCNIVPDVLSRREEVNSQAVLLHTPAKKNF
STVSCDLPLDLSQIACEQEKDTECQEIMVKAKSQRTTDLKRTHYICKNGVLFRSIPDSKEGQRLQVVIPEKLREVTLSYA
HDSPLSGHLGRFKTLMRLLEFAYWPSIRTDVWEHCKICEKCQRYKPTNLKPAGDLQSVPIVEPGYMLGMDIMGPFPRSSR
QNEYLLVIVDYFTKWVEVFPMRTAKSNTIVRILIEEIFTRWGTPAFIVSDRGRQFTSNLLDQLCKQWQITPKLTTAYHPQ
SNLTERVNRNLKTMIAMFVEQNHRTWDQWIYEFRFALNTAWHESTGYSPAEIALGRQLKGPLQRALHNPPDPNQPAYNTL
ERQKILYDVVRDNVEKAQSKQRKYYNMKRRTQNFEEGDLVWVRTHPLSKADDAFMAKISPKWKGPARIVKKLGPVNYKVT
MLSDVAQVDTYHTQNLKIWHGADF
>Gypsy-26_DP_gag#LTR/Gypsy 703-2256  [Drosophila persimilis]
MAVRRSTDDITTALQEAEPFCGICNEVLGTSEIIANTPCRHKFHKLCILEQIRTNPKCPTCSLDCSALALTFSNNTLLAE
LNAEGTRPTSANESFSTIDGTSNRPKKGQKFIRRGMNTRATQRSRLDRSLTETETNNTTLPITSQVEIANYVQSAVSIQQ
AQLMEQLTSFLSKTIESSIQSQLASLQLTQPEHISPDVSGDNNINQTNNVGIGQARDSHAEVLLDFSRASANRSNSSSHV
APAKVSSIMQNWRIKFDGSKTCMRMDEFIYRVRSLTQQNLYNNYQLLCDHLYLLFAGKASDWYWKFHRNYPNFNWDTFCI
EFRRRFEDVETDYDIWEKIRKRRQGENESFDDFQYAIEDLVDRLQNSVTEEDVVNLLIRNSKPTLHHELLHLKIANRSLL
RREVRKHEQFYNDIRSVKQRTLRSYVSELSGPDDSEQLFDDLVEHNEVCQIQRRTSQSVPTCWNCDNKGHKFDDCVGPRK
IFCYGCGTKDTYKPVCPKCNPPGNRQKDVLNNNKQTHP
>Gypsy-27_DAn_gag#LTR/Gypsy 583-2124  [Drosophila ananassae]
MAVRRSLENLVARMSSERDTTISCTICNDTNIQGEYVETACKHRFHRQCILSWLDNNETCPICRSACQRAQIESQNPTNA
EVNVPPSRTTRAVGNNNTTTGTIPRNRPNTRSHQRPNANVNPRTSLGATSRQDVTNPQANADANGISEERIHQLIASSME
SFRINMAATLSEEVRTAFNSLSLNGIPRENPEEPQLEWDFPAPLNHPRISLDSGARSNHCNRRNNNSPVREPVRDFSDKT
ANVISNWHIKFTGLLSDISVEDFIYRVNCLTSQSLNGNFVLLYKFGHLLFAGPALNFYWRCHRSNEETTWFDLCTRLRER
YKDQRTERDIKDTLRRRKQGRNESFDEFLDAMVAITDALREPLSDEEIVAEVRNNLRPELYHELLHVDTPSLSALRRECH
KHEAFFGNNKYKQGNSQNNFRRTINAVSIEDQQDEVSDLETDSQKVFAIKTTSMKCWNCDDPGHRYLDCLKPRRVFCYGC
GALDTYRPKCIKCNPHSGNGPQDIRNSHQRDVRK
>Gypsy-27_BG_pol#LTR/Gypsy 1227-4877 [Blumeria graminis]
GFSVVPDLKDSPDPGPSKLSSMSAFSISSFSVSQAEDKLDGDHLVAACILVTAKKSIQTYSLIDTGCSGYAFIDETFARY
HNFPLYXLKTPRTLKVIDGRPISSGRVTHACRLQLSIDSHHETATFFVTKLGSYPIVLGIPWLQRHDPELRFKNNTILFN
SNHCKQICNSSVVPPSIKGIAPRNLSKFVNSKATSECEPKNKLRVHSVEVEDNRKTKILTASGNSKVSLPVQYHKFYGMM
DERLANSLPPRRIYDHKIPIKDGKEPPFGPLYGMSREELTELNSYIQENLKKGFIRTSSSPAGAPVLFVKKNDGTLRLCV
DYRGLNELTVKNRYPLPLIRETLDRLSKAKWYTKLDLRQGYNQIRMAEGEEWKTAFRTRYGHFEYTVMPFGLTNAPATFQ
HFINDCLRDYLDIFCTAYLDDILIYSETLEDHVTHVHRVLEALQKKGVLLKPEKCKFHTQSTTYLGLIIEPGGIRMDPGK
VDAVKNWTAPKTVKDVQAFLGFANFYRRFVRGFSSLAFPLTQLTRKNAPFIWNSESEGAFEALKNAFITAPILAHFDPER
EITVETDASDYVSAGILSQRDDKGILRPIAYLSKKHSPAECNYEIYDKELLAIIRAFEEWRPELEGAAHEIAVISDHKNL
EYFMSSKHLNRRQARWAEYLSRFNFVIKYRPGKQGGKPDALTRRSQDFPGENDNRRLHQSQIVLKRENLERHLDLSAILS
LRTEKTNTPEWEELFVQGYQNDPFPGKILGLMKANVKQSKDISLAECAEFENKLVYREKWYVPQYDPIKLHILKQCHDNP
SAGHPGREKTFELVSRDYYWPSMRKYIARYVRNCHTCRRSKPSNHAKFGVLRPLPIAQQPWQEVSMDFVSGLPVSDGFDA
VMVVVDRLTKMRHLIPCNTTTTSKDVAQLYLCNVWKLHGLPTHITSDRGTQFTAKFWKELCNNLRIKARMSTAFHPETDG
QTERFNAVMEQYLRSYVSYQQDDWAKWLPMAEFAANNQVAASTQATPFMSNYGFHPRFTIAVKPYTKTTPSHNARDFALK
MRQIHDVLRANIRSAQDEQEQAVNVNRKPAPNYHVGDLVFLSAKNIRTTRNSRKLDWKKLGPFSITKIISPYAYRLDLPK
TIKIHPVFHVSLLEPAPVDPVPGQIQSPAPPIIVNEEEEFEVEEIYDSKMSKHNGLRYLVKWVGDNEPTWEPDINLDDTA
AVESFHQQYPNKPGPLH
>Gypsy-24_CSa_gag#LTR/Gypsy 66-755  [Ciona savignyi]
MAENDTGLQAVALKLPTFWTRQPRVWFQQTEAQFALRNIVSDQTKYFYVVSALDQDTASRLIDLLELPPNNDKYVAIKQR
LLNTFSLSRQERAARLFNLPELGDRKPSALMDEMLSLLGGHGFCMLAEHIFLQRMPEDIRISLSKVEIDDPRQLSLQADR
LWLAKLHDSNRDRYVAKVVTSRPDTRYNGDTKTDLVKNGTLCFYHYRFGEKARRCTAPCSYRGNDNAGRR
>Gypsy-20_NVi_env#LTR/Gypsy 9093-10262 No matches (yet). Possibly truncated. [Nasonia vitripennis]
MLNKRPIVNFDLFTYVNSKFVYVEKHFRGQFKNLYLNMLKEECELERKVIQNSLSLASVSPDEFAYNIMQKPGYIARLAG
EAIHIIKCTPVEVKIQHTDYCYTQLTVSSGNKTMFLTPKTHILLKKGTQINCNSIVPQYFKIGDNWINLMPAPRKSNNII
KTLKPSTKIAWQPEKLNSLATSGIYSQEDLQKLQQHIMFPMERASLLNTIARGMQGEETVQGGLISNLLTENTLMNIAES
TWNRFMDKLVRFGSISSAIIMIFIIIHISKLAIDIIIRGYTLHAMYGWTLHLLGAIFSSITHLLIVMRRNDIIVNDDNKQ
TPTTNPQDIQLQEIVVQNPISPKKEISPPIPIHPPNSKTYINQPIESKVESKVESKPESKISLFSLKPF
>Gypsy-20_Gav#LTR/Gypsy 254-4171[Crocodylidae]
MTGEDDVEAYLEAFEWAATAAKWDPGSWAARLGPLLIGPAQAAYRALSRTKARDYMKVKSAILYRLEISPETYRHKFRAK
KGPKGGRPRLLAQTLRDLAERWLRPEEHTTQEVVDMIVLEQFLTDLTGSAQRWVRCHQPKMVEEALHLAEDYATAEGEGE
TPERERGGGPNSAPRLNTTAPPRRGEAIRREGRAGGYPEVRCYQCGEKGHISQFCPRAVRDLSPRMERHDEKMDCSFGWH
RGPGQKSKPVVEVRVGNTIIPAVVDTGCSQSMVRSDLLPPHLGSPSTPVSMICMHGAVYTYLQRRLELSVLGRTEEIXVG
IAKTLPCPMLLGLDWPHLGEVVRQQMPDVPGEGEVRPQTLCFGDAEESLNIDWMMEEGSFRQEQRREPLFQNLWKSQREE
LEGATGTALRPPQTPGYEVRRGLLYRVEDLEEGGERAQILVPQRYWEGLLRVAHTLPMGGHLGRDKTEARLKRKVFWPGI
YKMTEKFCAECPECQKTGGVKPXRVPLIPMPLIKRPFDRIALDIAGPFPRSRAGYQFILVIIDYATRFPEAVPLRSVTAP
AIVTTLLRWIAWVGIPWEILTDQGKNFMSKILKGVCQVLKIKQLRTSVYHPQTDGLVERFNRTLKGMLRACIQGDPREWD
ALLXPLLFAIREAPQASTGFAPFELIYGHSPRGLLDLICEEWTQARMDPSQPRVVGEFRERLQKAQEIAQRHLSQNQERQ
RQQYDSRAAERELQVGDWVVVLLPDNTHKLMAQWQGPFCVTRRTGPVNYEVLRMTPMRRRQIYHINLLRKWHQGDGWLGE
PEDEMEEGNETVVRDLTGAREMPRVDGQLXPSRQAEIKTLIAEFQDVFKEIPGEARGVYHHIVTPPGQVVRDHWRRLPRH
LWPVVRQEIDQMKKRGIIEESRSPWRSPIVVVPKPDGSIRLCVDYRKLNEIARFDAFPMPQIDDMLEKIGQAQFISTLDL
TKGYWQIPMAREDKEKTAFGTPWGLFQFKRMPFGLHGAAASFQRLMEQLLAPHQDYAVAYIDDIIIFSPSWDTHCKHLQQ
VLGSLRRAGLTANPKKCALGKKETQYLGFVVGQGVIKPISDKVAAIRQHPLPKTLKQLRSFLGFTNYYRRFISNFSEKAA
PLTELTKGCHSPISWNSEALQAFDQLKDALCQHPVLYTPDFQKTFFLQTDASAVALGAILFQKEQGAERPVAFASRKLKP
TEAHYSTIEKECLAIRWGIELFQYYLLGRKFVLITDHAPLRWLSTAKLNNARLMRWSLALQPFCFAVEHRAGWRSGNVDF
LSRLGDVPIQGTISSKGDTPEGQGSS
>Gypsy-21_NVi_env#LTR/Gypsy 6680-7648 [Nasonia vitripennis]
MEPAEKSFEEEARRETGAARMLRLAAATGIRWPAVHSEVVLQAFSELVTLSEVASRAREEAEQVADEWAEKEAEGRAAER
AADXAEDDLDETAATVIEKSGRPTEDSPADNKPASEGAGAWGVTPEPSTPGASSLGDEERADSWVELRKELCILRDTIQE
SEDWEVXLFTRFDAYLQAAGSQADPEAQVWARRIEDRREEQVLLDGARRRRQDRRRALEAEERLDRLREKRERLEEKARL
EKQAARVRAMRKKWPARRSSSARSTSGRRGQRNRAVTCAAIRECGDPTSARSGSATRRYWRRHHETTRRSRGDVEDGWSW
RE
>Gypsy-23_NVi#LTR/Gypsy 2525-6548 via tfasty with Gypsy-17_NVi_pol, 1 frameshift. [Nasonia vitripennis]
MSQVRSFIWKSGKREERGTEINPVSRNSIAFTCERDRTSSESSVAVEEPSVVTSESDVDSRESGSVAKIHPRQVCWGVSG
KTIKHLDEKAVCQTPAERTLPEVQEKSAAELQQSLKQRGLGQLKASEAFGRSVPWVNGLPAWSEGEFSRDAIEAVQSRAA
KRKEVTFEENSKDSSDGDEAAGYAKLGEIARVIELIEEREVPAEPAQVKQNLAGRSKSVGEIQVEKKTESAKSADGPFSE
LLEKEQTLAGELEREIDESEVVVAGLTADNRNYVFVSLGGKRILALLDPGATLSMVSPKVAEHYRGRLLPINMRVRTATG
KLSKVQGVMRVKVDVDQNVREIDFKVVPDLDHDAILGMDFCEKYDVDTRHGRKLWRVCEGPWHAFASATRNKETLVFAEC
AGISEVEPDQREEIQRVVDRVLANQPEGAGLTWMAEHHIVVTDSRPIRHRWRRRSPKTMQLMVEEVERLFFEGFIERSAG
DYTNAPVMVRKADGTFRFCIDFRDLNKITRRDAYPMKSMDSILDRLRRARYLSKIDLRQAYYQIPLAKESRKYTAFALPG
SGLWQFTRMPFGLVNAPMTLQRLLDALFGPEYEPHVFSYFDDLVIATETFEEHVEWTERVFSKLKEAGLVVNKKKCQFFC
EKIQYLGFVLDRDGLRPDPEKVAPVLDYPAPKNVKQLRRFLGMVGWYSRFISRDSELKIPLVKLLRKGQAWQWGDEQQES
FDAFKKALTEAPVLARPDFNKPFTLQTDASSHSIAAVLTQEGEDGEHPILYVSRVLTPAERNYTVTEKEALAVVWAIKKL
RPYLEGYKFRVITDHSALKWLQNLRDPTGRLARWALELQQWDFEIEYRRGALNHLPDALSRAFEPEEEVASFGEIKDPEY
LKLLIEVEKFPLKYSNWRVEDGRLYRFRKEPMLDPIIDRDEGWRLVVPVEQRERVLTDAHCTPSTGHLGVEKTYDRVARE
YYWKGVYHDVYNFVNECETCRMYKVSQKGRQGLLGKRIVERPWVVVAADLMEFPPSKLRNKYLVVFQDLFTRWVEVKQIR
KADGRSVARAFEELVLFRWETPEYFLSDNGKEFDNQYLAGVLKEYGVKHVTTPPYHPQANPVERSNRTLNTMIASFVKED
HQNWDVHVHEFRHAVNTAVQSSLNVSPAFLNYGRHPRPVASLRREVEQRKGVEKVNPEDWANRMKRLDALRDLVSQHIDQ
AQEKQAREYNKGRRVVTFQVGSWVDRRTHPLSGAAKKFSAKLVPKWEGPFVIEEVLGPTVYKLGPAPGQDASRRIAKADI
IAATYTEQSSSEGSEPRLIFFIVFRGTRCRGRCRDSVATAAPTKRKREFCWRSHERASRSS
>Gypsy-23_DAn_pol#LTR/Gypsy 1147-4380  [Drosophila ananassae]
MRRHGPLGQRVQEPQNVVLQDVRRSGGKKHGMLPKSGKRAAIPAIERKAEIARCCLSEIVGGLTGDDQQLAAVIKVGGAE
VRAMVDTGATASFISEKLAEDPGIAGERKATRRLVKLANGSHIETQMVLLTTVSFGNKKKDLNMIVLPGMGDSAVLGWDF
LAEFGTTINCAGHQVTIPKRERWSGCLEDRLSIAIAGPSEEWERERDKRFIEEELAAFRNQKGCSNITQHKITMKDDIPI
KQRYYPKNPKIQGEINEKVEELLEKGCIEPSNSAYSSPIVMVKKKTGQWRMCVDFRQINAKSVKDAYPMPRINFILEQLR
EAKFFSSLDLKDGYWQIPLEEESRKYTAFTVPGKGLYQWKVMPFGLHSASATFQRALDQVIGPDMAPHAFAYQDDIIVIG
RTREEHMENLREVFRRLKVANLRINTDKCHFFREELLYLGHRITSQGIGMDPGKVAAITELEPPTNVKGVRQFIGMASWY
RRFVPDFAGVAKPLNDLLRKGTKWEWTSKQQEAFEKLKSRLAEDPVLACPDFTKKFVLQTDASDYGVGAVLTQDTDEGER
VVAYASRTLIGAEKNYSATEKECLAIIWAIRQMRPYLEGYQFDVITDHMALKWLNNIESPLGRIARWVFELQQYDYVISY
RKGKLNVVADALSRQPIVEKLRSATATEDAECVWIGSLKKKLKENPQKYPEYVEEAGLIYRHVPHRAGSEEVASWKLCVP
MYMRQQVLKENHDAPTAGHLGGRKTIAKVAARYFWPGMQRDVRKYVRKCETCLRYKPSQMQAAGKMLTQVPEEPWATVCA
DFVGPLPRSKHGNTMLLVMIDRFSKWTEMVPMRKATTETLQKAIRERIIARYGVPKVMVTDNGVQFTSRSFKKFLEELGV
RHQFTAPYTPQENPTERANRTVKTMIAQFAGKDQRTWDERWPELMLAVNSSVSDSTGYSPCFITQGREPRMPKAIFDQGA
VGTGEAQATPSENAEKLKEVFELVRRNMERAAQEQARHYNLRRREWSPKIGDTVWAKEHHLSKAAEGFAAKLAPKYDGPY
TVVNFVSPVIAVLRHAGTRKEKRAHLSELKAQAQESAQA
>Gypsy-27_DWil_pol#LTR/Gypsy 1228-4298 via tfasty with Chouto_pol, 3 frameshifts. [Drosophila willistoni]
KGRSLLPFVQKKVAGGILRFLIDTGAAKNYVKPLSWLKGVSPVEKPFSVTSIHGSTVIDQKCKIYIYGINSTFFVLPDLS
NFDGIIGLDLLKQANATLDLKSNRITVGSESELLLYAKCPNVNFTNVVGEQISPKYKNEFIKMLRAFASPNEKLPYNTAV
VATIRTTTDNHIFSKLYPYPMVVSDFVAAEVNDLLKNDIIRKSRSPYNNPIWVGKKCTDEKGNRKKRLVIDFRKLNEKTI
SDTYPMPSIHMILANLWKSKFFTTLDLKSGYHQVTLAERDREKTAFSVNGGKFEFCRLPFGLKNAGSIFQRTIDDVLREQ
IGKTCYVYVDDVIIFSESETAHIKHVDWALNQLFEANMRVAQEKSQFFRTSVEYLGFIVTIEGARTDPEKIRTITEYPEP
NTLFGVRSFLGLASYYRCFIKDFASIARPISNILKGKNGSISKYKSKSIPIQFNELQSHSFHKLKNILASEDVTLMYPEY
KKPFDLTTDASADGIGTVLSQNGRPVTMISRTLKPCEINYATNERELLAIVWSLNKLRQYLYGVKDINVFTDHQPLTFAV
SDSNPNAKIKRWKARIDETGAKILYKPGRENFVADALSRQNINALNDDDCESDVATIHSEASLSYTITSSDKPVNCYRNQ
LILEQARFPLKRQFILFGQQIRHLINFSNNETLLGEAKDAINPNLVNAIHCDLPTLARVQHELVKTFPATKLYYCKQIVA
DIFDSNESREIFITEHNRAHRAAQENVKQIMSDYYFLKMTQIANEVVTNCKICSIAKYKRHPKRQELGSTPIPGYVGEML
HVDIFSTNKKYFLTCVDKFSKFAVVQPIVSRTIEDLKAPLFQLMSLFPKAKTIYCDNELSLNSMTIKTLLQNNFGVEIAN
TPPMHSSSNGQVERFHSTIAEIARCIKLQRGNVDTVDLVLLATVEYNHTIYSVTQKTPSQIFCPLSEASKCVRDMINKAQ
VTQRERVNRNRQSRVWNVGDKVFVKVNRRLGNKLSPLYVEETVEADMGTCLLIKGRMVHKDNLR
>Gypsy-36_DWil_pol#LTR/Gypsy 1995-5195  [Drosophila willistoni]
MSHEVILGRDFMKACNIKLDLNALKMVTIERKEGENELGERSEFESLSLQTCHTDLQIARNVNVVRTVDEIVKTKNCKNR
IVTKECNPKREDEEIVSEIVKRDDSEIVSEMVNEIDSKIVSETENGDRSKMVTKSRNEAVIELVSEKFRSDRKCEERKET
ADVQSLSEVEFELLNIECFNTGVDCKIGERLDFKIRERFEQLFERSYLVAQRPELPDVKCEMKLNVEGSKAFSCAPRRLS
YSEKGKLQAMLDGYLEKKIIRPSESEYASPIVLVPKKAGELRLCIDFRRLNKVLVKDNYPIPLIDDLLDKLGDKRFFSKL
DLKDGYFHVFMEENSVKYTSFVTPLGQFEFLRMPMGLKNSSSVFQRFVNKIFTDMIRDNKVIVYQDDIMVASRTAEEHLD
ILKEVFRRIIRNKLELRIDKCEFFQSSIRYLGFIISEEGIRADDKGLEAVKNFPIPTNVHTVRSFLGLASYFRRFIRNFS
LIAKPLYDLLKKDRVFKFGKEELDCFSLLKDKLVESPVLAIYNHKDEVELHCDASALGFGAMLMQRKEDKKLHPVFYYSK
RTSDVESKYHSFELETLAIVYAVRRFRVYLQGRYFKVLTDCNSLTLTLNRIELNPRIARWALELQNYDYEVVHRAGKQMQ
HVDALSRCTNILVVDTNSFEDNLVICQNRDEKLQTIKRKLEFSEDKLFEMRNGIIYRKTNDGRLLFCVPSEMEESILFKY
HNELGHIGRDKVMDAISKTYWFPNIKEKVVKHISNCLKCVAYSPKSGKEEGMLHSIPKGNRPFELIHIDHCGPIASGRSK
KHLFVIIDGFTKFVRLYPTKTTNTKEAVLALKDYFRAYSRPFAIVSDRGSSFTSSEFEMFVTQNNVKHIKIATGSPQANG
QIERVNRTLGPMLAKLSEPEKGIYWDLIVENVEHCLNNTLHRSIKQLPSKMLFGVEQKGKVADELREGLEQLGIVNDQKN
LDTIRKDGEIHQKQSQKYNEQQYNSKRVAPTGYKAGDYIMVKNFDSTIGASKKLIPKHKGPYVIDKVLKNDRFLIKDVEG
FQLSRNPYQGVWSSHNIKHWIGKRKSD
>Gypsy-34_BG_gag#LTR/Gypsy 43-1185 [Blumeria graminis]
MSNSNTPAWNPPTSIEEFRQLYDSDASNLFNQLGSLVQRYRSERDAARSQVSNARSQLEAANKSIDNLEQQINQLTVDLS
VARTVQIPTPLSNPAKNFRSERFPDPEKFNGDRSNLPGFVTQLQMKLRINSDRFQDEPSKVIYSISRLEGRALQQIVPIV
RANPSAPFASIQSLITYLEASFGDPDPRGTARQELQKLQQGLGDFSSYYSEFLRIIGYLNYNEDAKIDALDKGLSIELKN
AMIHQIHRPSCLDEYALMLMNLDNRIRGLKAEQNLNHVAIAPQNFHNLAHPSHVSGGLAPMDLSALKARMTLRPPVEDRY
MYVNGLRKISASEKQWRRENNLCMYCAGAGHSSNSCPTANRRRSHDSRDPEVTTKHQQDFQ
>Gypsy-41_AMi#LTR/Gypsy 89-5457 via tfasty with Gypsy10_DR, 1 frameshift and 3 stopcodons. [Crocodylidae]
MSDPASPQQSGGEDGZGSSEQGRATASPGVTSEWIVALQQVIREVVNSSNDRAAYKRLRNFSGNLPVPAGEEGFESWTAH
IQETLMTWQIPDEEKRRRLLDVLREPAFGVIRTAKLQNPGITTQQCLQTLQDVFGWPSQGGGAYYELLSMFQHKGEAASS
YLLRLEQVLQRVVAQGAISPSEVDHVRLRQVQIGAxYSLALIRDLNLAGRKTNPPGFSQLVKEMREEEEILHLRDAMWVR
EEVSSRQGPVSRVMAVTPQEEGPPEVEEESSRPVWAAAVSRAPPGRQPRPRSFAPPRAKTKAGTKMLGICYKCGEYGHLA
xECTQPDNPDLVFQRLKARWGAGNEGRVEQGSRLRPRACQTPKPCVSNSLPEGLIGPRAEVPVAVNGQRCMAILDSGSQV
TIIFESFYKKHLQHVVLHPLTGLGLCGLSHNPYPYHGYLEIRIKFPASVAGVEKEVNSIALMCPDPGWIKGASLLIGTSS
SIFQVLARYCRQQAGPDYQERLPMHALCSEAYARWERKGMGKSPQILGALHFSGMAPQKIPAQGQWALPTTCRWGGEPQQ
LGPIVVETLSGKRGLGTLRVPDGVFEARELKGEQVTVVVVNPSLRDVVVHPGQKVATVREADVVNLAKKDSALHIDPNWF
FFGDSPAPEEWKAQLWKKLQDRANVFSLHDWDVGEAKGVEHQIRLSDPRPFRERSRRIPLAEMGEVRRHLQELLNHKIIT
ESKSPYASPIVIVRKKNGNLRMCIDYRVLNARTVVDQYTVPRVQEALDCLGGSKWFTVLDLRSGYYQIPLREADKEKTAF
ICPLGFFQFERMPQGISGAPATFQRLMEKVVGDMHLTQVLVYLDDLIVFGKTLEEHDERLLRVLDRLEAAGLKLALDKCK
FCQASVKYVGHIVSQNGVSTDPEKVKAVTTWPRPSNYRELKRFLGFAGFYRRFVPDYAAITRPLNQLTRGYQIGKSSKKR
GAQDPTQGVQKVCSPTEPFGSRWDAQCEDAFHKIIRRLTEAPMLAYPDSNRPFILHTDASLSGLGAVLYQLHEGWRRPVA
YASRSLAPSETRYPAHKLEFLALKWAVTEKFRDYLYGTTFQVWTDNNPLTYILTSAKLDATGHRWVAALADYSFSLHYRA
GQQNIDADALSRLASPTDRDVLLPETVRALCDLPARDPVAEGVNAVCAAETLGIPPDGIPQAWIQYTTLTPAVLPQMTAA
EWCWAQEQDPDVRDVLWARRKSTEHPPHIGQVTPAARLLVREWERLRLIDGVLHREVQDPEGRTLLQLILPKEQWELTLR
ALHDDFGHLGMERTLALARERFFWPRMAEDVKDKCLNCERCIKRKTLPTRTAYLHTIQSSQPLELVCMDFLSIEGEGNQK
GNILVVTDHFTRYAQAFSTRDQTARTVAKVLWEKYFLVFGMPARIHSDQGRDFESKLLREVFAIAGIRKSRTTPYHLQGD
LQPERFNRTLLNMLGTLRHEQKAAWSQYLAYLVHAYNATRNDATGVSPYLLMFGRQPRLPIDLCFGVEKAYEQHLTHGQY
AQQLRNWLRRAYQLAADAAGRNQQRHKKNYDARVREQGLCPGDRVLLHNLGLAGRHKIADRWRAEPYTIVRQMGNLPVYE
IAPEAGPGxKRVVHRNLLLPIGELVGPCPPAQQPPQARPRLSCQEGAPAPDPPXAIVPEDSDSDCGXWYLSXFHPSLGPP
LRKVNWARGLXCLXPHPXELPGRAIHLQAHTETSSXXPSTSREGTVGDTRPTLXGPPGSPEPDHTPRPRRDRRPVRRLRM
MPLXYRERYPPPPHGXGESWAWGCDLHRGR
>Gypsy-53_DWil#LTR/Gypsy 26-4621  [Drosophila willistoni]
MNEVNFNLCSVVLLKQWLQSLGLPTTGTRAEIMARLLEIPLEQRGSPPESQQAENVEQEGNRDQPLAQHVDAELPHEEET
EAVEQQISAQPEQMEALNDEAATLVQLREELNATRIMLQKLCLEVSDRAQGNLTVDCLDSINDVNIHSGNAVKDTNCSGN
AGNINDHIGTAKYSSVEQRSNQMINKLLDSPAAALSLAKEVAMDYNGDTCVRAWISQMQNISQIYNLDVVRMRMLFIAKL
KGKAQQWLHDSATRILEPVDQLFDQLYLAFGNKTSKAEARSKFQDRKWLASENFGSYFDEKMRLADDINIDMEELLECII
DGISSKSLRDQARIQCFSDPRQILQAFSSVRLPELKKHPIPTQSGRESYNSVNEDVRCVNCNSKGHLAVDCRKPKRERGS
CYACGAFGHFVAQCPERKSATGNQYVRIFNIYFCQNSRSPLIAACLLDSGSSISFVKKRHISSHLTLEPVLKEYFGLNQS
QLNIFGKTLCYVLKGSIKCYFYLNVVANESMSHDVVLGRDFLTACNLKFNLNALKLVTVQKVETENREDTNNSNLNYSKQ
LDETVTKQFDETVSKQVDKIVSKQLDETVSIELNKTDSTELEEKDRIQSDRTLNEQRHEILTIQSNKKFIEEELEKVVND
LSNINYTEDTIDDYNWDEKLNYDTKCKLRQIIKIYSLNATFPEEPMTRCEIKLNLEKSKPFSCSPRRLSYTEKDQLQILL
DDYLKKGIIQPSESEYASPIVLVKKKTGDIRLCIDFRKLNKVLIKDNYPLPLIDDLLDKLVNKTVFTKLDLKNGYFHVYV
NKESIKYTSFVTPLGQYEFLRMPMGLKNSPAVFQRFINKIFCDMIKDNKLVVYMDDIMVASKDINEHLETLKEVFIRLAK
NKLELRLDKCEFMKSCVKYLGYQISSEGIKTDDKGMEAIKNFPIPEKAQAVQSFLGLCSYFRRFIKDFSILAKPLYDLLK
KEKEFVFQEKELNCFLLLKEKLMNAPVLAIYDYKDEVELHCDASALGFGAVLLQKKSDKLLHPISYFSKRTTGAEEKYHS
FELETLAIIYALRRFRIYLQGKRFKIMTDCNSLTLTLNKVELNPRIARWALELQNYDYELIYRPGNKMQHVDALSRCTNV
MVVETTSFEDNLIICQSKDPKIQNLRKLLEKAEHKLYEMRNGVIYRKANDGRLLFYVPENMEEHVLYRYHNEIGHIGRDK
MIDLINKSYWFANLKDKCTSHIENCLKCIAYSPRSGKEQGFLHCIPKGNRPFELIHIDHYGPVSAGRAKKHIFVVVDGFT
KFVRLYTTKTTSTKEVLSSLKDYFRTYSKPKCIISDRGSCFTSSEFEEFIENYTIKHIKIATGSPQANGQVERINRSLGP
MIAKLVEPEKGLHWDLVVEQVEYAMNNTQHRSVKQLPSIMLFGTSQRGRIVDELKEKLELINQDTKQKSLTEIRNEAIEA
QNNAQSYNKTYYDKSKRKPKEFKQGDYVMVKNFDSTVGTSRKLIPKNKGPYRIEKVLKNDRFLLKDVEGFQVSRNPYQGV
WSIQNIRHWIKK
>Gypsy-50_NV#LTR/Gypsy 37-3971 via tfasty with SUTRVLEP_pol, 3 frameshifts and 4 stopcodons. [Nematostella vectensis]
MNLDGFTRAPLPPVNLEASNLGDEWKQWLESFQNYSIATKLNKEEDVVQRATLLHLAGVGVQRLLTGLPGVKTKCEDVIK
VIADYCSPKKNKWAERYKFQKRAQERGESLDLFVAELRVLADTYDFGGAVEEHILGQVIEKCADSYLRERLLQQGDELTL
HKAQSLGRAIEQAKKDAGLLGGQEKSTTFDVNQVQKTSTQKREKKCYRCGNTDHIANDLKCRARAAECHRCKRVGYFQRC
CRQPIKDAKQEMKVNSVEPDVASNSWTGGHxPxVCAFHKRKGAQNLSVTTKINGIPIEMIVDTGCSRTLVPKSWYQAKTD
GKLQREIRCIGTFIGTINYEGKEITEEIFVVDVQGPPLLGMSAITGLNLMKVYAVTTGDSSKADKLVDELSDVFSGRTGE
FKGYEYKVLVNEDVPPVAQRQRAVPAMLETKLKIEMERMLQDGVIEEATGASWVSPIHVVYKDNGELRVCVDLREVNKAV
IRERFPIPRIQHVLRQLNGAQMFTTLGLRKAYWQLKLAEESREITAFMAAGKVYRFTRLPFGLASAPEAYQKMMSIICGG
LPGVLTYFDDVVIYGNTEAEHWDNLRRGLSVFQEAGLKLNASKCIIGVSELKFLGHVISDVGVKPDPEKVKAIVDAPTPK
NVAELRSFLDSITYLWQYVDNLATVIAPLRKLIQKGVAWHWSRQESEAYSAVKEMLVRAPCLAHYSMEAETKLIVDASPY
GLGAVLMQRHGPEFKPVAYASRGLTDVEKRYAQIEREALGVLFGLQRMHTYVYGRHITAVTDHKPLPAVFTxASQSIRLE
RIALRAQNYDFVLSYEPGASNVADGWSRLPQTPVWGHGTLxRTCLLLACDLDFLTLEEIAEAGKEDSKLQDVVESINTGW
TTSTVQSKRWAHMKDELSYAQGVLWRGRRAYVPQKLRRKALHVAHAAHQEMVRSKQRLRESLFWHNMDGEVEEFCRNCET
CVRLQPLRKDTPVQSTPLPQRCWDKCALDLVGPFPGQIYILTLVDYKSKWPEAVILHSLSSKSIIKALVDIFFRFGNPKE
VVTDNGSQFISGEFEDFLKSKGIAHSRSSPYYPKANGQVERFHRYLGYGLRAAEIDGISWMDALPGILQVYRATPHARTG
VTPAKLLLNREIVTNLPCVQDTETVNLEERYGQYQQKLRDYAENRRGAIPHDLSVGDIVFVANMNRSKLDPRYLGDRHVI
LRQKGDGAFDVVNVNSGKLSVRNAKYLRKAPTHQVNLPALLTENGAVAQQSVTPEGLENHDLLTGDSGREVSTEKAVQSE
REVDPQPITELKCRRSTREPKPNVYSEYYYYS
>Gypsy-32_NV#LTR/Gypsy 77-4089 via tfasty with Gyps1, 1 frameshift. [Nematostella vectensis]
MVSEFTLPPPQALDLHDVNVAERWKKFRLAWDNNALATELDKKGEKVQVATLLTIIGEEARDIYSTFEWAAEEDKTKIKT
VLDKYAEYCQPRKNVPFERFRFNQRSQEQEESYDQYKTALRKLSEGCEFDKITPDEILRDRIVFGIRDSKVRERLLREAS
LTLKKTDEICKASESTAAQMREVGNGETIHAINSGFKAGKSQRRQSDRRSNDKSNNAEKCGNCGRIHDKDNCIARGKPCL
KCGKLNHFAAVCRSRKSGGVMAVVEKSSSKDGCYVISEIAAVTLDDSQLLALKLDSGNYLRFQPDTGAQCNVIPVHLYKQ
ASTDVGLINVQPVKSSISAYGGSRLPVIGEVIVRVSRDGSKCKLNCKLVDSKDIRPILGRKACIGMNIIKYTDNDALNKP
QTGSAPVYAVENKCQGQKCETKGSLYEKFPQAFANGVGLLEGQCHIKVDNAVNPVQHAPRRVPVALRQRLHTELERLVEQ
KIIASVTKPTPWVSYLVVVPKPNGKLRICLDPKDLNKAIQREHYPLLTIEDVATRLHVAKVFTKLDAKNGFWHIELDEDS
SYLTTFNTPFRRYQWLRMPFGIRSAPEVFQRRMHEMIEGMSGVEVVADNFVVIGCGETLEEAIQDHDKHLIAFLERCEER
GLKLNAEKFELRETEVAFIGHVATGTGLRVDPAKVKAILEMPDPTDKAGVQRLLGLAQYLSKFLPHLSDETKPLRDLTRD
DVEWCWDEVQTTVQNKLKEAVTSTPVLRYYNLNEPVTIQCDASQSGLGAALLQNGQPVAYASRALTSAETRYAQIEKELL
AIVFASEKFESYIYGRDVVHVGTDHKPLESIVLKPLCSAPQRLQRMLLRLQKYNLELQYKKGKEMFLADTLSRAYLPEVN
ATEFIQEMEKIDHKQYLPVSKARWEQIESASANDTVLQQLRVMLQQGWPFKRAEVPQCLLPYYDIRDELVLQGNIVFKGQ
QLLVPLALRKELIEVTHGSHIGIEARIRRARDTLYWPRMSTDLKEYIRKCEVCMAYRNTPGKEPLKPHDFVARPWSKVGA
DLCDLEGRTLLVISDYYSNYIEVAHPKFTKSKGIIKELKAVFARFGIPDVLVTDGGPQFGSAEFAVFARTWCFDHILSSP
TYAQSNGKAENAVKTVERLFMKCKDSGQSEYLALLNWRNTPTEGIGTSPAQRLMGRRCKTLLPIAGTLLQPRYDTDADAR
ALLGTKQRQQYYYNRHAKPLKEVNPGETVRMKPPGHERWIPGVCTEKLDNRSYKAKVGDRVYRRNRRHILKTNEPALQET
DTPFQEPEASGEDTPPQIVLDESNERVRPVTMPTGLRRSERSKQVPVWHEDYEVTMRG
>Gypsy-28_NV#LTR/Gypsy 69-4091 [Nematostella vectensis]
MAAALPTFPEFDVAETSTQAARWKKWLSRFKNLLVALNITDKTRQRALLLHYAGEATNEIFDTLADTEAGAGDDPFEKAV
QALTGYFTPRQNREFEIYKFRQATQEPDESITAFHTRLRQLATSCEFNDIDREIKTQIVQSCISHKLRMKALENPSYSLT
QLLDAGKAMELSRSQAASIEKQESVNKIEKDRPNHRQGRNKDGRRRQDNAPSQQSRDRKPVPENRKSSEKCRNCGRGYPH
AGGKTSCPAYQAVCRGCGKSNHFEAVCRSKNKAPDRKSRRPVNKISDSESSDEEEAYTFSLSTPKTKDQPFFKIKVQGTP
VTIMADSGASINVLDEEDYRKLPKSAKLEQSGVKIFAYQSTNPLQVLGKFTAITESTTKNISARFYVVKGSGGSLLSWKT
SQELNLLQTVQQVTAKTPQGKTKVNELTSLIDEYDDLFHGLGKLKNYQIKLHIDENTPPVAQPHRRVPFHVRKQLEEQLQ
RDEELGVIERVEGPTPWVSPIVVAPKPKSPGKIHVCVDMRQANKAIKRERHVTPTIKEMIGDLNGAKVFSKLDLNQGYNQ
LELAPESRYITTFSTHMGLMRYKRLNFGISSAAEIFQNVIRETLEDVDGAINISDDVLVFGKTQEEHDRNLRAVFKRLRE
KGLTLNKSKCEYGKEKLEFFGYVFSKDGISPDPKKVEDVVNLQTPSTASEVRSLLGMTNYCSRFIPDYATKTEPLRKLTH
KDQPWCWTAEHDSAVSQLKDALVSAPVTAYFDPERRTEVSVDASPVGLAAILSQVEPKTEARHVITYASRSLTETEQRYS
QTEREALAVVWACEYLHLYIYGKPVTVYTDHKPLVSIYGNANSKPPARIERWALRLQPYQVTVKYQRGEENPADYLSRHP
TKFAAETSRQQKVAEEYVNYLTKTSTPKALKTQDIENATESDATLQAVAEAIRKGNWHSAVKRPSVDKTDFQLLERVKDE
LTMNESGNLILRGTRIVIPKSLQCHVVKLAHEGHQGLVKTKSLLREKVWFPNIDKQVESMVKSCSACLITTPESTREPLQ
MSPLPKAPWTEVSVDFAELASKEYLLLIVDDYTRFPIVEIVSSTSAATVLPKLDKVFSEYGVPEVVRSDNGPPFNGKEFA
SFADDLGFKHRKVTPKWARANGEVERFVRTVKKVIKTAKTENKSYKQEMQRLLRNYRATPHSTTRVAPATALFGRPLRTK
LPQTAVPCADQEIRQRDQAAKEKMKQYADNKRYVKPSTLAEGDTVLVKRDESKRKSDTPYDARPRMIVGKKGSMVTAQDE
DGVKVTRNSSFFKRVPAPAEDQDDVPDQDPPTPADVTPPRRYPQRARSRPHKLDDYVCDK
>Gypsy-28_DYa_env#LTR/Gypsy 6527-7994  [Drosophila yakuba]
MGTARTITSFMTIKHLIHLEEYEVTTDKLHELITNLPDLPNIVEIRTLLLRKLNQIEQKLTSLLPSESNSRPRRGLINGL
GTIIKTISGNMDATDEEKINSELKQLGRNAENTAQFQNETLIRFMEITDHINKEQEVINNFINFNQNRISKEIDTGLQDA
ELNIFLTRININLDLLYTHLAGIAESLLFAKLNIVPKYILDNAEIQKIKMSLTDQNVKIKADYEVYNLLSLETSTEKKTI
VFEIKIPILSPNNYTLYQIVTIPFNGTEIVNLPKFILEDRIELKTLNTNCIRVNDLSVCETPTDPDNPECIHNLLANKTA
TCTVVETITQTRIYSPIEGLLVILNARDVNMTSDCIPSKSLSGSFIINHDSCSITINGTKYADATVTMTDRWQMDITKTN
DVKTMPAVEPINLQQLHLSTLKTKWAINTMQSKAADHLTTIYILIASSIVLAIAAWIWRKDKIIYATTSLPTTGTPAIPS
LWPSFRLEGG
>Gypsy-31_Adi#LTR/Gypsy 181-4338  [Acropora digitifera]
MADTEETPPPTAPSQPPTPQHTPAPQILSFPSNFPVPNAMVCRGDLTSNWEFFKQQWQDYEVATSLDQKSQSIRLATFRS
VMGKECLQIFLNLNCGTEELTINSALKALEDHFLPKRNVVYERYVFNSCFQAPEESIDCYVNRLRKLASSCQFGTLTEEM
IRDRLVIGIQDKSTKARLLREKDLSLDKALDMCKSSEITNKQLKSIQKVEKQNNEELNLVRDTRKQAPGNKKLNQKRPPQ
KLMKPPIKPGPGKTWKCKYCGQHKKHAKQEDCPAYGQQCRSCKRMNHFAKVCLASKEKIHVAEEAEGYGYESEESLLKIE
EITAISGSGKQLTASITFLIGETYKEQLICQLDTGATCNVISHRNLVQLLQDGDPPLLKSNTKLKLFDGTLMQPVGETML
AAERKGKRLDLKFQVVESSNKPLLSAETCEQLGLLKVDIDPEESIHVLRSGNLTRDQIISDYKDVFEGLGHIGDTSIITD
PSVKPVQHSPRRVPVALRERVKAKLDDLEKKGIVEKVAIPTDWISSMVVVTTPNKIRICLDPKNLNTAVIRPKYQLPTLD
ELLPKLSRAKVFSTLDAKDGFYQVGLDEDSSLKTTFWTPFGRYKYRRLPFGINLAPEEFECKLHEKLDGLPGVAVIRDDI
LVMGHGENEEEANQNHDENLVRLLEQARKANLRLNSNKMNLRKSEVRFMGHLITKDGLKPDPEKVSAVQEMPRPTSKKEL
LSLLGFVNYMSKFLPRLSEVAQPLREMTAKEAKFIWSPQHETAFQEVRELVVRHPVLKYYDLKEEVTVQCDASEYGLGAA
LLQNGQPVAFASRSLSQTERQYAQIEKECLAIVFSCERFSQYLAGRERITIESDHKPLQSIFQKSILSAPCRLQRMMLRL
QRFNIDVKYKPGAQMYVADHLSRASLADNNEMTDNFQVFALEVETLTPFDSIKVAPERLSQLQKCTAQDLVLETLKTTVL
TGWPERRDECPVQIRDYWNYREEISLYNGLLFKSQRVIVPKAMRSEILSRIHSSHQGIVSCLRKAKDIVFWPGMNSEIKA
LVERCSVCAEFQAKNASQPMQTHQIPERPWSKIATDLFTVSGKNYITVVDYFSDFVEVSELESTTSHAVIQELKEQFSRH
GIPDIVVSDNGPQFSSQEFHEFSLTWEFSHVTSSPHHPKSNGKAESSVKAVKQLFKKAERDGKDPWLALLDYRNTPTEGI
NASPAQRLMSRRTRTLLPTASSLLRPEVCTQSTEKLELKRQKAKFYYDRHAKQLPELEIGQEVRIQPLRKNQTWKEATCI
ERLSDRSYVVKSGNEFFRRNRQFLKPAAEPSPTEKRSTETGSQELEVTHKENPKVPKSPSKPASPKQDSVEGAVAMETQV
PLSASQKTRTRSIRPPSRFKDFDMKR
>Gypsy-32_DEl_gag#LTR/Gypsy 906-2315  [Drosophila elegans]
MSFPGPYRETKHELDSDSEEELIRDTRRYQPARAQQESNAETMNATQIEALIQAALTSQEQRLRAEFAGQINAVNQQLQS
LRIEAPEVESYQRVKVVPGAPQCDIPLHIVKSIPDFTGIQDEYVAWRQSATDAYELFESYEGSSAHYQAVTIIRNKIKGP
ARALLVSYNTVLNFKAILARLDCSYADKTSLRLLRQGLESVRQGDQTLMQYYDEVEQKLTLVTNKIVMTHDDERASLLNT
EVRADALHVFISGLKKSLRAVVFPAQPKDLPAALALAREAEASIERSMFAATYAKVAEQRNQNTDFHKGQHRAPEKQGKN
PGADRGPEKNPHFFKKPNKYQNNDTWHKRDNWVDQGKQNQSLEPMDIDPSSSKVRHPTGFKQGNNTQYQNLQNLKRPNSS
ERMTGQRRQRVNNVEQTASAGETQDYESAATAALNAIDDDSDSFDGNDLVNFLEEGPACPSLSEGWRGKL
>Gypsy-31_DAn_gag#LTR/Gypsy 694-2142  [Drosophila ananassae]
MNPAEAEKGAATPVKVPVCTLCNKEMATGRARTKCGHEFHKACITTHAKSKLSCPTCKVVCFEKAQAASDTTGASTSQLT
RRADSPCGASQASSQAESAGSTAELSSIVSQSISAMQATLLEQLSAQMDRLFHQRAQAEREGEEGTGSYEQPSGVYGDER
EIRDQGDYLGNGVRQPADHNFGYRPEKVGQILNSWKIRFSGHPDGMTIDNFIYRVEALTHQTLDSNFSALCGNASLLFDG
KAGEFYWRFHKLNRGMRWNDLCDALRKHFRDDRSDEDIREAIRDRKQRDREDFDTFYEAVEQLMDGLSVPLSDATLVEMV
RRNLRSEIRHELLNVSIRSISHLREICRRRERFLEEVRRDCGTSKPGWGKKPYGETQRREDRSSHRSYNKSVAEVGSDVE
WEEAQEFSGDEAGEVEAVALICWNCRKEGHRYHDCAGKRKVFCFGCGAPNVYKPSCPKCLKNGRANALDRPSQRVPSGVN
KDK
>Gypsy-14_AA#LTR/Gypsy 926-5038 via tfasty with Gypsy-19_NV, 3 stopcodons. [Aedes aegypti]
MLGYFTPYVAIFNFKFVFSLEGLTNQQVVYLFVLDSSAMPPFKIGVDPRNDWMKWRKAFDRFLRANKIVDDEEKFDLLLV
IGGIELQEYYDKITKFEVQYFLPSGESVTLQYDSAVTSLEKYFAPQLNKRFERHLFRAMKQDDNEPFNEFVFRLQDQAKR
SDFIDVDDMVIDQVVEGCKSTELRKKLLTDDLTLNDVMTLGKTIEEVQKQSKQYERPNLSTYEKPLVQRIVEKRPDKYPN
VESGRRCYNCNRPGHLAKETERCAARNATCHSCGSKGHFKVCCRKRKHGDSQQRSVPAPKRSMVQAIHDEKTPTKGVFTV
NDGIHLNEVLKLEVGGVIMNMLVDSGSPANIMSSKSYAWLKQQGANMLNERRPRNNETNLTPFASDQKIFFSDAFETEIK
IPGDESGVWTHVLVAPDGQTNILSKSTAFALGVLRIGYKINQISNSTELAEEFPKVPNVLLKIQVDEKVSPVVQVARRLP
MSMEADVEEAIRELLEKKIIERAEGSLTWVSPLVPVRKADGKIRLCVDMRAANQAVKRENYPMPNIDAAMMSITKVGTDF
CExTIKFxLVCSxIKQIARLSKIDLEAAYYHFELDESSRVITTFVARSGVYRFRRLMFGIKSAPELFQREMENLFRGMKG
VIVYMDDVLVHGATAEDHDATLARVLQILRDRNMRINEQKSVFSVTEVEFLGYCVADKGIRPTDDRVKAILGLQAPTSVS
ELRSLLGLINFVGRFVPNLSALTFHMRQLLIKDSPFEWNKVHEEELGKVKSILGNVQSLGYFDPADDTQLVTDASPYGLG
AILIQIKNGIPRTISCISRSLAVHEKKYCQTEKECLAIIWAMEKLFVYLYGIKFTLITDCKPLEYLFNRVQSKPSARIER
WILRLQSYDFVVRYEPGKNNIADPLSRMSQGLEESIGDIDTVAWLAEEIRPSALSIEEIETETKRDDKLQAVKDAIFSNN
WDAAPVEFRTTTIKDDLTTYGELILRGDRIVIPKQLQDKVVQLAHSGHQGCTAMKAQLRAKVWFPSMDKAVESFVRGCKP
CKMTGLPDSPNPILRRVPSEPWQDVAIDFKEGLSGGLSLLVVVCYTTRFIQVEPMKPATSQRVIAALLRMFSVLGIPRSI
TADNGPQFRAIEFSRFCVCYGIHLNLSTPYWPEQNGAVERQMRNIGKRLKISEIQGTDWQTDLYEYITMYHATPQETTGV
SPGKMMLGREIRTRIPSIRTPYSLQWEEARDRDMGKKEYHKQRADAQRHAKEHTLVRGDTVLMRNLDPGALDSTFRGEEF
DVINVNNNAVQVRSTETDRVYLRNSSHLKKLEKDREMKCDQSQAKDTEDESCTSVETAETTSNHAEEENIANERFSQRTR
KRPSKFRDYVV
>Gypsy-13_DWil#LTR/Gypsy 1579-5024 via tfasty with Gypsy-2_LG_pol, 1 frameshift and 1 stopcodon. [Drosophila willistoni]
CIVFFQQRPLPIVVDTGAAVSVLNWRDVKQPIRTSPCQVTMYGMASSTLTSTEETMVELQVLRKPLIHRFVLVKDSTPTL
LVTDFWLEHKVMIDFDKMHLRFHWGTMPLLRASEAPRNPIYLMTPVCLAPRSDTHVRVQCATTKPALPSLLKEDCYTELP
DDIVLSTGVVLTSGGQFSARISNLSAHERTLPPTLVLGDLETVEVVLPDRCEDASSDSVDWDRFGEVDLPPTKQLMLKEL
LDRYRLIFARNDDETGQTNLASHHIDTGPARLIKQMARRIPLARKAEVQQLVADMENRDIIRRSVSPWSSPVVLVKKKDG
ATRFCVDYRRLNEITVKDSYPLPKMDDILSTLYGSQWFSTMDLQSGYWQVRMDEPSRPKTAFTCDAGLFEFNLMPFGLCN
VPATFERLMDNLLSGVMWKFALVYLDDVIVYSRTTEEHLTHLQDVFKRLADAGLKLSPKKCSFFKKQISYLGHIVSRDGL
QACPSKIDKVLSWPTPRTKEVRSFLGLCSYYRKFIPNFATIARPLHQLTEKLRRFEWDTHCSHSFDTLKQCLTTAPVLAF
PNDTGQFILDTDASNSGAGAALHQLQDGQERVIEYYSKCFQPVERNYCVTRRELLAVVRATKHFHHYLYGRPFLVRTDHA
SLQWLYNFKEPEGQMARWIERLQQYDMQIQHRSGTQHGNADSLSRRPCSDCPTCERVERKNGVVVLFTQVLLPDLRKEQE
ADQALGKVRDWMNKSERQPKTTLWGESPENRALWHLYDRLAFDEIAVITIKNSENIPVALMPRSLVDAAIRGVHDSPSGG
HFSAKKTLAKAKKRFYWIDQSADITLWCARCTICNARKGPPRRTVGRLQPSLMGAPFDRLAIDILGPLPTTPRGNRYVAV
VMDYFTKWPECAAIPDQTAETVARALVQEVFSRFGVPFVLHCDQGRNFEAGVFQACMRLMTVEKTRTTPLHPQSDGMMxR
FNRTLLDYLAKFVSTSQHDWDELLPMALLAYRSAVHESSGYLPARLTFGRELRLPNDLLFGTPAPVPTKVPEFLAKLQNQ
LWVVNANARRQLLTAAQTNKIRYDLRSHPQEFCPGDEVWLYSPSRRVGRCPKLQCDWIGPATIVRRIWDLVYEIRPPGKR
VTRTVHVNRLAVYRPDPRNDLVLGQEPRV
>Gypsy-14_DR_pol#LTR/Gypsy 1845-6401 [Danio rerio]
MQSHSSKIKDGKLPRGLVGERCIAQVTILGQKCNCLIDTGSQVTTIPLSFYDQHLSETPINSISDLLEVEGANGLSVPYI
GYIELNITFPAEFIGTSVELPTVALVVPEPESCTMPLIIIGTNTLDTLYDEHLKTSSMTFQPSLFGYRTVLNTIRLRHKH
NAGALGQIRLRSKVPEVMAAGQTVVLEGIAHMHGFPTDKWIVVEHPSISFLPGGIVVKNCLLTLPSRRYSHLPVVLTNET
DHNITIPQRCVIAEIHALESVLSSDNAIPKQGFQSDEPKVIKEEEFILNFGDSPLSQEWKDRITKKLREMPEVFAQHDLD
FGHTQKMKHCIKLHDESPFKHRARPIHPRDIGAVRKHLQELLLSGVIRESESPFSSPIVVVRKKNGDVRLCIDYRKLNLQ
TIKDAYALPNLDETFSALNGSKWFTVLDLKSGYYQIEVAEEDKPKTAFVCPLGFWEFNRMPQGVTNAPSTFQRLMEKCMG
DINLKEVLVFLDDLIVFSASLEEHERRLLQVLARLKEYGLKLSPEKCRFFQTSVRYLGHVVSEQGVATDPEKIEAIKTWP
CPRNLKELRSFLGFSGYYRRFIKDYSQIAKPLNELTSGYPPSRKSCKKAEKEYQYHDPKEPFGGRWTATCQRAFEILIEK
LSTAPVLGFADPKLPYVVHTDASTTGLGAALYQEQNGKQRVIAFASRGLSYSEARYPAHKLEFLALKWAVTEKFHDYLYG
GTFTVITDSNPLTYLLTTAKLDATSYRWLAALSTFSFRLQYRAGKQNVDADSLSRRPHESLPEDQLSVKEFERINKFVEY
HTMDTENPQNTDRDIIRAICEKHSVQQSDDSGVTLVESLAIHPDAVPECFEQEDSLNGLAALPLLMKEDLAERQRCDPVI
REVVMCMESGEKPLPALRLEYPDLPFYLREWDRLELIDGVLYRRRREGDSVNFQLVLPEDLRSFALNSLHDQMGHMGTER
TLDLVRSRFYWPRMGTEVEHKIKTCSRCVRRKSLPQKSAPLVNIQATRPLQLVCMDFLSLEPDKSNTRDILVITDFFTKY
AVAIPTPNQKARTVAKCLWDQFIVHYGFPERLHSDQGPDFESHTIKELCAIAGIQKIRTTPYHPRGNPVERFNRTLLNML
GTLEEKDKSHWKDFVKPLVHAYNCTKHESTGFSPYELMFGRQPRLPLDLAFGLPCKDCKQVSHSQYVQSLKSHLKESYEV
ASQNARRIAEKNKIRYDKHVTNSSLEVGDRVLVRNVRIRGKHKLADRWESEIYVVVKQAANLPVYTVRPETKDGPLRTLH
RDLLLPCGFLPASKIPDPVVSKPIVRHNTQKNPDSQILDSSVSVLEMDNDIPEMMCGAYPIDETRFTTVHQVLRPNVSDE
VPHNPEVIHSRSADKVAQSDQSSDLPADVPEQAPPTENIREHLPVGVPTDSLPDVSEITESSPIPDAKSVNDQENSQEEC
SGQTQTSDEEGNDLLEDLPRRSTRQRKGPKMLTYPQLGNPLMHVVHSFFQGLNTVLLNALDNSESLNDLPGKSNIQDV
>Gypsy-14_SMo#LTR/Gypsy 2349-9481 via tfasty with Gypsy-20_SMo, 5 frameshifts and 4 stopcodons. Translation between pos 7830-8700 very iffy. [Selaginella moellendorffii]
MYKQKPDPIKIRERDLRQKNREVKKEEVVKEKLEQQQQQILETILNKYDKEDKQIQVAESSNPVKDNKELNIKDAPEFEA
FEEAEYTAPEFYSNPDSPEQQLNQQSLQPPMAIINPMSTIGSMITYPIFTGSKSEDSELHVKQFNQIVKMNNQEQHQAIL
FPYTLKGKALEWYNTLEDSVPHDEKLEQFKEQFPAGGTPEEHYEQIKNIKQRPKEGIQDYTRRFKLHAKKCKDLITDKGK
SLSYIQGLREAYRNMIALADTPDEESVDSLSQGILKLEKRFKQFTKGESSHANDDSDDEEEEILIKTKKKQTQGKDIRHV
LKKLASTELKQGVFCTKCKNEGHSVSDCKFHLPKCQICDREGHIAKNCRYRNTTEVSRVENVQRGPPRQNYQGNNNQEQR
PPRNYYYQDNQQYNQGYNRGYNPPQNQNYSQGQNDYRGNYNQQRYNGHQNNYQRPQGNNYNQSQQRQYNNYNNQASQQNY
QPRQNQPQENQIRQQYNPQNQRVNQAPAGRPPAARVVQAEVDVEDEEQLMTEEPEVLAITRTQYECQQPDNYEEQDESDQ
ALEIENTEWKKSKKILNTIQQELQNKDPEIINDQIYNQDDQTQVLSFTQDEHTTIAEHILQQGITLTLQQILQIAPYMKD
QILKICNRRIPEARTQEKHQSQPTQQEQAERIQPGDYDDNVPCINVHIGKNHIERAILDGGSGVNIIEYALCKALGLGNI
QTAPFNVRMADQRVVRPAGIIRDVSMTVKGHKFKVNFVVLKMPIEESSYEILLGRPWLNKAVSAQYWMEHEICIQSQQGQ
TKISTLTSKKISRSFRPTQVQEYNWQEGLDDLEEAKLFEAYPELKAIQEIDLNRILPVTKCQDYEDSKQPNLKKTHTTKT
TIQKARPAIQPEQLQTTEYHLDIQDEPALTTENQEFKLRVNINEDIEELNLGVPSNPQNVLIATQLDKPFKLDATALLTK
YKDVFAWSYKDLKGIPPDLCTHRIELLPGIRPIKQTAYRMNPTFAEKVKAEINKLLEAGFIYPIQNAQWLSPLVIVPKKN
GKLRICVNYKKLNDATTKDAFPIPFSDEILDAVAGHEMYSFLDGFSGYNQVHIAVEDQHKTAFISPWGAYAYMRMPFGLT
NAPFTFQRIITDTFQDYLTDFMRVFMDDFSVFGPKDKHLEYLEKCFIKCRQNQVALNPEKCTFFVKSGILLGHIVSTQGI
QIDKAKTDVIMKMQPPHDLKSLRRFLGKMGYHRRFIKDYAKVAKPLTDLLKKDKFYHWTQECQQAFLVLKEKLTQAPILV
QPNWTQEFLVQVDASDYALGAILCQRKDDHRDHPIYYASRRLSPPEMNYTTTEKEALGMIYALTKFRHYLLSNKVKIFVD
HQALIHLLNKPILSGRIARWFLLLQEFNFEIVHKPGKYHEQADHLSRITTGENIQDPNDDLPDSHLFKITTHDTLQEIFN
YLTTTKVPTSCTTQDQRKQFVLRTRRYSVVGGRLYRIGHDNILRRCVRSQEEIHELLEEAHAGCSGGHFAEEITARKILQ
AGLWWPTLWKDTSQFCQTCDICQRTQFPPKKQTQELNPTIAMEPFQRWGLDFVGPIQKSRNGNQYILVATDYMTKWAEAQ
PLKKATAKNTAKFLYETIITRYGLPREIVTDRGTHFLNETIKILLDEFFIKHKKSTPYYPQGNGQAESTNKTLKNILKKI
VQTNLKDWDNRVYDALWAYRTAYKVSTNSTPFKLAYGLEALTPLEYTVPSLRMAIQLQINQEESIKKRLAMLEKLDEERL
YALWTIEAIQARRKAYHDRKQTIKKTDRFEVGNFVLWYRGNVAQNGGKLVHQWEGPFKITSMQTPGSSSMSPRRRQASLC
STHTGFKSRHHERSRELQLGAxFAILQRQGRALQNLQVPCSQPGILEDCHDSEQIRGLHLRGSSSWEESGFSRICDPEVS
xGTxEGGRRTQREEMCEDTDTTVCPSHRHAxKSSHGDLQSTTSPPQHEATKSSKRQAEEHLMNTEKKKVQRKTVATPRRK
TRGQGRRNVAPPQIDSDDSDVQTIQHKVPRRQQPTRTSRSKTKRQQSLAPTQPSMKSLQPPSSPQPDLPPSPPHEPAQSL
SPGTTIPVDDHISLTQEFLKILRRLQIHHPLSRGTTLFTNHPHRSRPPSNTSLSSSLHRAAREQQPPPLQPVEQHQHSLP
QPAEQPSPPHQRAEEQPSLPQQPTELQQPAEPHQTFAPDTTADNMQPPRSTMQRQFHHERVNNKRHHYNPEQQEHHHQDQ
QQPKVIRPMPTNFLEQYHNSNMAVYTRDGMESFFRNVFARPHEEKMASMAQELDQVKGILRTIQAHGLPTPNTCRESFEL
AQQYQLENARLTKENMELKARLQVLETAIKNYTRDELEDXEEEPEANTTTATTTTMEA
>Gypsy-14_DWil#LTR/Gypsy 3787-6899 via tfasty with NOMAD_pol, 1 frameshift. [Drosophila willistoni]
KFYEASRTGVPYLKYVTKDGECLTFLIDTGAAANYIQKRHAPHGQQMTRPFYTASVGGSMKITHYIEGQFFKPFGIETTV
IFYVLPNLVDFDGIIGDDTLRRIQAVLDRSTNQLIMPQGVKIPLSMMSSTAANMMATPKSYTPQLDEIIHSFSHIFGPLV
ESETVTTEVRAEIRTIDQEPVYTHTYPFPAPMMGEVKRQINKLLDNKTIRPSKSPYNSPLWVVPKKPKPNGEKQYRLVID
FKKLNTVTIADRYPIPDINSTLASLGKAKFFTTLDLTSGFHQVRMREKDIPKTAFSVLNGKYEFLRAPAIFQRMIDDVLR
DLIGVCCYVYIDDIIIFSKSEEEHMTDIRRVFEKVSEANLRINLEKTTFMKNEVNFLGYTVSSEGIRTDEKKVAAVTAMK
PPTNLKELKSFLGMTSYYRKFIRDYAKVAKPLTNLTRGELGQVKANQSRKVQITLGEIELKAFEDLKALLVSSEVLAFPD
FNKPFNLTTDASNEALGGVLSQVQDGKDRPISFISRGLSQTEENYATNEKEMLAILWGLETLRSYLYGAEDIRVYTDHQP
LTYALGNRNSNAKLKRWKARIEEYNCKLFYKPGKSNAVADALSRITSHLNPLRLAPSAGQTLRLPLLRVNTPLNAFRNQI
ILVMGTDIDTSTEPHPGVQRHIVHINLTQDIAISRAALEGTLSKTHINGIKVPETAVSEMQPIIWEYFNNYKIRLAQEIV
EDITSEDQIQEIIQREHRRAHRSYWENKQQILSRYYFPKMAARTKSYVSKCTTCGTQKYNRRPKKPHLQPTPIPRMPCEI
LHIDLFVIEKLWFLSCIDKFSKYAMLFPIENRSSIHLKEKLMDVLAYFSVPKLIVMDNERGLLCPIIINLLHELQIEIYR
TPSQKSEVNGQVERFHSTFLEMYRCLRIEHPKLSAAQLAKLTVARYNESIHSVTKQKPANLFFNRTSEQELANNTNPRET
LLENIRGLLEHQQTTTNRAKNLKREKPLSYEVDQEIFVANKQIKGKHVKRFFQEKIAQDNKVTVVTQTGKNLHKSHIK
>Gypsy-12_ST#LTR/Gypsy 265-4729 via tfasty with Gypsy24-PTR, 2 frameshifts and 5 stopcodons. [Solanum tuberosum]
MTWLPHVAGLPTFGQYSLRVFSMGASPLPTFSAQGDTMPTHVPLGSNPQLGAQGGGSNTGGHQNHHHQGTTTMSRMTKME
FPRFNGTNLRAWLCKVEQFFSLDEVAYNQRVKVASIHFDDIAIExHLAYIRSRFHMPYLSWEEYVYSLMDKFGAEYADPM
SELKLVKQNGTVEDYQKEFDRIMTRLVILPEYATSAFITGVKPEIGFTVKNHRPHSLPQAYQLARNTELQVNAQLKLTKS
SMFGNNSSLHPRGGSYSQPKSGSYGGNFKGSFSRKEGNPPRREGVANFNRSNTRRLTPAEMSEKRLKGLCFFCDEKFVPD
HKCHTSKQLYLLEVIDEQEEEVEENTEVQEVVEVREEQQGEICEISVHALTGIPSFHNMRVVGYNDKRPLNMLIDPGITH
NFIDEELVKQLGLKVQAVRLQSVNVADGSDRQTAEMCHQLSWLIQGVTFVDNFLLMPLRSCDLILGVQWLLPLGDLQLNF
QKLTLGFVYQGRKVELRGIKENTKLVNAKNLHKMVHNGGQLFMIKVLTTVEPLEEEGEGIHPQIKSLTEEFQLLFGNPKE
LPPSRATFDHKIPLEHGSNPVNTRPYRYSSREKDVIEGLVQEMLDQGIIQPSCSPYASPVVLVVKKDGSWRLCVDYMALN
KLTIKDKFPIPIIEELLDELGGSQIFTKPDLRSGYHQIRMAREDVQKTAFRTHSGHYEYLVMPFGLTNAPSSFRGLMNHV
FKEHLRKFILVFFDFILIYSMSLEDHLQLLRITFNLLIQHRLLVKKSKCSFGAARVEYLGHLISAERVATDPKKIAAVxE
WPIPHTIKELRGFLGLAGYYRRFIRRYGIISKPLTDLLKKKEFHWNVKPTIAFNQLNKTLVTAPILSLPNSTQQFLVETD
VCDLCLGVVLMQDGHHLAYLSKGLSPRQKGLxVYDKELLALVLAVTKWSQYLLGRHIGVKTDQKALKFLLVQKLDTGTQM
KxIAKLMQFDFHIKNKQGRENKVVDALSRLPVAELFLISVIPIDSLLLQKIKISCEIDPEVKEIIRKVQEQQEGIKSYTY
VNHQLRKKGKLVVGKDEQVRQEILQYWHNNPNGGHSGMENTYRRISTLFYWRKLREEVNTYIRKCSVCxRSKYDAAAYPG
LLQPLPIPSSAWSNITMDFIDGLPKSKGKTTIIVVVDRLTKSAHFISLSHPCTTSAVAQIFLDQIYKLHGMPENIVSDRD
PIFLSKFWQDLFSVHGVTLSTSTAYHPQSDGQTEVLNRTLETYLRCYCSDSQADWSSYLPLVEWWYNTTFHSAIQTTPYE
GLYGQPPPLHLPYVSGEAADEEMDRSMLTRECKAQFLRFHLHRAQKRMVDLANKGRSDRQLQVGDWVYLKLQPYRQVTVS
NHSYSKLSAKFYRPYQVVQKIGPVAYKLNLPSYVSIHPTFHVSQLKFFHKVPRNITHPPVVDVSSPYCVEPQIILDRRMI
KKGNKAVVQLLIQWKDMAVEQATWEDYSVMKIRFPRLFLEDKGVSKKGE
>Gypsy-10_SMo#LTR/Gypsy 226-5129 via tfasty with ATGP3B, 9 frameshifts and 4 stopcodons. [Selaginella moellendorffii]
MPPWNKGKKEVKSSPSADGESSNVEVVDPVNSPQVVPEPVGELREVLQSFMQRYVTNHQQDLERFQQLQRTLAIIEHNQA
TMGGKIEELGEQQRVLAEKQEQMGSRVKDRGDPDLKDIVHRFSDEDWFQDSSPELPPTGDRPWYDDLLEKMKSPVPEGGA
KGILGRGPGMGSRWQDREKLNIPEYDGSNDRLRLQDWLRKLEWCFVWRDTKGVDKVPFASIFLKDLASEWFHNLERARIF
PDWEQFKVLITDTFILTPVLELPFNKLCDLRYDWQHQTLQAFNTGWLRARYEVVGVSDEILAQRYVAALPSSMAGDVAQT
KPVSVRQAMVAALNADQRFREWESRLRRPDISRLHRQDFPAASPTPTPTVLPTVNSDKERKPWRDLSTQERAKRSEDLKL
GKCFDCGQKWTEDHHLVCPSRKGATVPKAKVAMLHFREAASGEFVPVDMDTVDESEEIFVWESGNNSPGLEDPDSSGGKA
FISCSAYFGKTGPQCFRVRGTINGRVAFGLVDSGASHTFVNRRSLSQLKLLPLHTNSLLNVEIADGGMVESSQVVDCAFV
VGEYTVKGWFHVLDMGAVDVVIGVETLQQLGDIMVNFQEQRLSFNNNGKRVTWAGIEVPHGLLNGVLCPVCSDVWEGRNR
RTSxSWRPNRGLQKAERDEVMQCRVADSKNSVAQQEEFQSFDKIFSGxRFQGFREVLLRHLPVFSHQVSLLVSSRTGVEH
SIVLEGNSIPVTRPFLRLSREERQEVDRMVDELLTQGLIEPSSSPFAAPVLLVLKKDGGWRLCVDYRALNRITVKNRFPI
PRVEELMDELGGACFFTKLDLRSGYYQIDVVERDRHKTAFRTHRGLFQFKVMPFGLTNAPATFQAAMNKVLGRFLFNFVV
VFFDDILIFSRTWKLHLNHVEQVLQALEEAGMVCKLAKCSFGAVEVDYLGFKVAREQVMADPNKLEAVRDWPIPQPxNSL
RAFLGFANYLRKFVKHFGLSAAPLTDLLRSTQFCWDARAQQAFVNLKQRIVEAPVLVLPDFSKEFTETDASDPGVGGVLS
SSMALWLLRAAGSLRxIQSSSVRTGNGSVMHAVRRWKHYLAFRHFRLRTDHVSIRFLLTQPHLNKKQMRWVEELQAFDFT
IEYRPGATNVLPDALSRKFARTEESALYGISRLQPEYVEQIQEGYAQDVALQQILEQLQNGEQHPKLVLIDGILWSKGRV
FLNNKHPLRQEIFHECHQGILAGHPGVAATSAAIKLRFVWKGMQREVKAWIQECPVCQVVKTETVASPGLLQPLPVADGP
FTSISMDFVGGLPRCQGKDAIMVVVDRFSKTARFLPTTSSVSAAGIAELFSREVICLHGLPREIVSDRDPKFLSSFWRHL
FSALGTKLSFSSAYHPQSDGQTERTNQTMEVFLRGYTLDHPTSWLHWLPYAEFAYNSACHSATGMAPLEALYGRRILVGQ
PRLPVPEVTVSGHLETIRELHQQVHSRLEAARATMKLQADKHRSFRTFEIGDLVYVKFRPDVTLWAVERRARSKLTQRYF
GPFEVIERVNEVAYRLALPQGCRLHDVFHVSELKLHYGPTPMPTVEVPVRSSGDQHLLQPDKVVDVETRQLRRRTIKRYL
VRWMNTGGDXYDTWLSQQEFDRLVHSVSVGSCVTSQ
>Gypsy-10_DVir_pol#LTR/Gypsy 2083-5511  [Drosophila virilis]
MQSFGKPEAGCADQHQFDASHKRIKSLPEIQSYGSLEQSTPNTIFTTYMANTCSVAETATQTDIENKYVPYHIRVKHYLD
TRRRIFSSIEPIEFLSRPKRSTVRLRKFWKNIKSLRKKLVQSVFMSSDNRLYTELSLEGEKYVALLDSGATISCLGNVAA
KSLLSHPKARKCSGSIRTANNAICPVVGKLTLKVEFRKQVHNVDFYVIPDLKQDVYLGINFWQDFGLLTNLIRPDESVNE
LDNSNEQDIQETAKMHQLTAEEKSRLNSIISNFYSYEKEGLGRTELIEHRIEIDNVTPVKQRHWPISPAVEKLMFDEIEK
MLALDIIEVSHSPWSSNCVLVQRKDKNRLCLDSRVINKYTRKDAYPLPHIDGILSRLPPAKYITGLDMKHAFWQIPLEEK
SRQYTAFTVPNRPLFQYKVMPFGLCNAPQTLCRLMERVIPAHLRTRVFVYLDDLLLLSEDFDSHMLLLQEVALRLRKANL
TINIAKSKFCMREIKYLGFIIGYGQLKTDPSKIQAINEFPVPKSVKQLRRFLGLAGWYRRFVNHYATVSFPLTELLKKSK
VLKWNTDADSAFNTLKTLLTSAPVLATPDFSKPFRLVCDASTTGLGCVLAQLNEQEEEAPIAYMSEKLSKAQRNYSVTDL
ECLAVIRGIFKFRAYIEGQDFEVITDHASLQWLMRQKDLRGRQGRWVIKLQGFKFKVSHRSGTQNVVADALSRQNETELA
EFEEQGPIVDLSSPEFKSPNYLDLIDSISSNQSRLPDLQIIDGFIYKRTEPATGYSIQEKQSWKLWIPSSLALQVIERAH
DPPNAAHSGIGKTIEKLKRYLFWPKMSAQIHEYIVNCKVCRQTKSPNVVLRPPMGKPMTSERPFQKLYMDLLGPYPRSKN
GNIGLLMVVDHNTKFHFMRPLRAFTTNKIIDYLENTLFCTFGVPETILTDNGSQFISSVFKAFLTRYGIIHIRTAIYSPQ
SNASERVNRSVLAAIRAYIGKDHSNWDKKLYAICAALRASVHQSTGYSPYFLAFGQNMMLNGKDYDLLKRLNLLSEDTAI
ERPAALQVIRQIAKDNVAQSHNRNAKIYNLRSRNISLTAGTKVFARNFCQSNAQKKFSSKLAPVFIPAIVVQKVGPAYYQ
LANETGKCVGTFHLKDIQTSNKF
>Gypsy-11_DPer_gag#LTR/Gypsy 1392-2696  [Drosophila persimilis]
MGVQWISYRRKDELQAIAVEFGLGETGTVDELRSRISAFISRGEHPTAIEKRIKELGTVFDSAPSPRNPRNTSTSPGPSQ
REQKEGICAEQPLSIVIPEFPRAAQGPGYGDSGRLEATTDRRHGDNHYQHRFPEEAGTSRPGREEISFAALADKLRNWGL
KFDGHSDALAFIERLEERVDSYGGSPAQLPRAISGLLTGKAEGWFRTFQMQGKPWTEFRKEFLEFFLPPRYFQRLEDTIR
SRHQRPREAFQDYLIDLRLMMQRAQYTPDRELDRIYENLRPEYQLFTRRHEFETLRELTHLIVAYETTRDREQTRHAYDR
PDTKARTTSYQGPGLSTPQHAPPDDTGPSRSAETASRVVTQDGDRPVNTRRACRNCGEEGHFSSSCRNRRVLFCWECGRR
GIRTIDCCRLSESGNGPSLRSSGNRSETYLQGPLE
>Gypsy-12_Adi#LTR/Gypsy 65-4135  [Acropora digitifera]
MGDPAPNDGEIPPVQADQLPAADAENHAPAIVAQPAMAVQAVSVANYQVPPPEKFSFKPEDWTRWIRRFERFRKATGLDQ
KSGENQVNTLVYSMGEEADDIMVSFGLTADDATQYELVKNRFESHFIVKRNIIFERAKFNLRSQQEGESVETFITDLHCL
AEHCEFGVLKNELIRDRIVVGLKDKKLSEKLQLDSKLTLEKAVTQARQSETVKKQQDILQGTQPDPPSANVDQISKKRGT
GGKWKDQKDKPPKNSKLAGKTPETKCTRCLGTPHSKQECPAKDSKCNKCLKKGHWAKACKSQLKKKVGEVYSCPEVELER
EFFLGQLTEVDMVERNSKESWKAEVKLNEHAVKFKVDTGADVTVIPPNIYHSLVPKLSLSKCDKMLMGPCKHKLCCLGNF
TAKLCVDDKVITELIYVVKDLERPLLGREAAEKLKLVNRVDTVSSDDFKTKIASKHPQLFAGLGQMRETYTITLKEDAKP
FAISVPRKVPLPLYQKTKDELDRMLETGVISPVDQPTDWCAPMVVTPKSNGKVRVCVDLSKLNEFVKRENHPLPAVDTTL
GRLAGSTVFTKLDANSGFWQIKLAWESRPLTTFITPWGRFCFNVLPFGISSGSEKFQKTMNQILLGLEGVECNIDDVLVH
GKDQQQHDERLEAVLKRLLDAGVTLNLDKCVFSTKQVKFLGHVISSNGIEVDPDKVKAIADLPPPTNVQEVRMFLGMVNQ
LSKFSDHLADKTKSIRELLLKGNQWTWGNAQRKAFKQIKVDLARAPVLALYDPNKETKVAADASSYGLGGVVLQLQPDKS
WRPISFLSRALTPTESRYAQIEKEALALTWACERSWEYITGKSIYVETDHKPLVPLLSTHSLDQLPPRIQRFRMRLMRFH
FKEISHVPGKKMYIADALSRLQPQNADPQPTIADDEMTAHVASVITGLPASDTRLQRIIEAQDEDPVCRQIKTYCSEGWP
DKHSVKDAMKPYWSTRGELTVVQNILLKGTRIVIPSSMRLEILDKIHEGHQGIAKCRERAKSSVWWPGLSREIQDLVQQC
RTCALHRDNKPEPLIATPLPDRPWQIVATDLFQMRGMDYLIVIDYYSRYVEVAAMTKTTKSSEVIRALKSIFARHGIPEQ
VRSDNGPQYDSAEFSHFAKQWGFKHVTSSPRFPQSNGEVERGVRTVKNLLQKAEDPAKGLLAYRSTPLACTFSPAQLLVG
RKLRNSVPMFHTELNPHWPDLEKLHARESESKLKQQSNFNLRHKATPLTPLEPGTEVHVKDLDRPGVVVKAAETPRSYEV
KTSISTVRRNRVHLAPMPEQRENQPVPAEDKIAAPVQADQHKLKLNSQAAPATPLLANRPKRLLKPSLKVRENLGLI
>Gypsy-11_DVir_gag#LTR/Gypsy 751-2241  [Drosophila virilis]
MLPLRSPQNVQPSSERADNHCVLCQLVMDNTQSCYCTPCRHVFHKLCLEGWLVNHAKCPSCSAVIDPASIKLVVGDCSPR
GKQSAPPPPTNIGRTVTRSLAKSLNPGPTQSGENPTARLLDVSDVPQSGLDASNSTNPPEIAPARPAPGVRRRGRPTQSN
NTRQNLGVDYRIIQEMIEQSITRVMSSLQIQATPFPRVLPTPIPVSPSSSSFRNGKIADTMQKWNLNFDGSTEGLGVEEF
LYRVKTLTDETLDSDFMGLCKHLHVLFLGKARDWYWRYHKQVDHIVWTEFCTALRHQYKDYRSDFMSKELVRARKQNPGE
SFVSFHDAVASLIDKFAIKIDEEELIEILKNNLLPETRHKLLYQPISSVGHLRRLVQMNENLVHELSCRTDGMNKSRTIG
RRQVYGLEESFIEPEVENSEDTNFDIAAIRRCHANFKCWNCEEQGHLWENCLADRRIFCYGCGAPNIYKPQCQNCIRKAS
ENQQKGASSSSRMPPKI
>Gypsy-15_AMi#LTR/Gypsy 113-3648 via tfasty with Gypsy-2_Gav, 2 frameshifts. [Crocodylidae]
MVDPNERKNPWVQEEDRKEGQTHISDLKAQQLGLELMCQVVQGLQKQAERQQALLEKMVGTYRQTKLPPVGICGYGARVY
PEPGEERPALTVDVRLEGQKIQAMLDSGSSHTIVRRDILPRGEREVADQITIQCLCGEAQRQDRVWVTLQVGEKVRRMLV
GVAEHLPYPMMLGCDWPELLTVIAQAYSLRGARKNGGTPQRYPSRTRGKASEENSGAGEGPSWRPLGAGKRGCKTARSEV
VLGDDLTAEAFAGEPELPLSDEEAEQEVDVAHLWEDEHFRLEQSREEGFRYAFQEHLAQRNGEVLRPELMQTTPRFEVRN
DLLYRVERGKHGEEEVVQLLVPRRYRKALLKVAHELPMGGHLGRDKTEARIRGRFFWPGLIREVAKYCASCPVCQKVNPS
RPPRAPLVPLPLVEVPFERVAVDIVGPLPRSSAGHQFILVLLDYATRYPEAVPMRTVSTPKVAEELLKIFSRVGLPKELL
TDQGTNFTSRVFEGVSKTLGIKHLKTTVYHPQTDGLVERFNRTLKQMLKKFVVESPQKWDQMLPPLLFAIREAPQASTGF
SPFELLYGRQPRGILDLVKESWEEQQSKDQNLVQYVIQLRERLESARREALGNLREAQERQATHYNRGARERKFELGDRV
LVLLPDQESKLLARWQGPYEITRQIGPVDYEVYQPDKQKKKQIYHVNMLKPWQERECLYLALQPDEPELGPSLREREGGS
EVEVAPRLSEEQRRQARELVREYGDVFQEVPGEARGVMHRIRTPPGQVIRENWRRIPQQLQGQIKEELGMMLEKGIIQES
RSEWRSPIVAVPKPDGKIRLCIDFRKVNAVAKFDAYPMPRVDEMVENIGQASYISTLDLTKGYWQVPLAPEDQEKTAFAT
PWGLFHFRRMPFGLHGAAATFQRLMDRVLAPHGGYAAAYIDDIIVYTADWPGHLTALRAVLQDLRKAGLTANPKKCTIGK
EETRYLGFQVGSGKVRPLLDKVEAIRKYQTPRTKRQVRAFLGMANYYRKFIPHFADLVVPLTEMVKAAAPTKVRWTPEAE
AAFQKVREALCTQPLLYTPDFNKPFVVLTDASNWAIGAVLVQMEEGEEHPIAYISRKLHPPERNYATIEKECLAIKWAIE
TLRYYLLGRKFTLITDHAPLRWLQSMKTDNARLMRWALSLQPYCFEVEHRPGTKNVSA
>Gypsy-18_DTa_gag#LTR/Gypsy 52-1386  [Drosophila takahashii]
MGKKWIYRLKTEDFAYVAERLNIALEGRTDDKRKALSEYYSETENDPKLAGIWVELEAAYPEKTAPSITLTPAEGEDLLA
SLSIDNMQKEAQKRVPSPEKKETECVQKTAAPVRTPTPTPSQPDYAKVAKQVREWSFKFDGIEKPFEFLEQVEWSANTYG
LDLDMIPRAMPELLKGRALKWFISNNKQWQTWAEFIQSFNTYFLPRDFFSTLSDKVKQRKQGYGETFKDYMIDIQAMMRP
LNYSPTEALSIIRQNCTPNLKIALRAYTVADLDTLMDLADEFEELEKERETFAQENKFARAKPAAQAQTMCRRCEDTGDQ
EPRGNSQWTPPLQDHRQQATNPPYERQRAPIQHQQRQPTNPLWRPPITTQRPRESTHITDPQEACRKCGGHGHWERGCRN
QRLLFCWVCGKVGIRSVECCQRAGNGQRSQPQRGGRGSQNASSPN
>Gypsy-18_AMi#LTR/Gypsy 59-4200 via tfasty with Gypsy-26_AMi, 1 frameshift. [Crocodylidae]
MQPPIANTPDALSQNLQLLTQIVDTQQQLLQRQQEWMRPGVSAFKMPRMTSEDDPEAYIEAFERHAILTGLDKVFWAGQL
GALVVGKAQAAYRAMPRDEAEDYDAVKTAMLYRLEINPEHYRRKFRAKKGAEERRPRLLLQLLRDLFGKWINLATCDREA
VVDQIILEQFLDDLEGRTQQWVRQHSPSSCEEALKLAEAFAASEGFFPKERRTPNPSAGVVKEVERKKGPIRGPVRDIVC
FHCGKMGHFARECPNRTQERWRPEQWNRGGNESRRDAQAGEPMDCSFGYGREDAVWERPTVRAQVSGRKVWAVLDSGCAQ
SLVRAELVTPCPGRRATPVRISCLHGETQQFPRQWVSLQVMEHQGELLVGLAPRLACEMLLGRDWPPLYDTLERIRDREA
AKRRLNNEDGWVGESEERAESDDEPGMVDLQAMASSWRFKEAQAEDEELRELWSAPPDDASTSDAGMTLRRPRFEVRNNL
LYRIQPGREGETEQTQLVVPTCFRGVIWQLTHATPAGGHMGRDKTRARISRWFFWPGLGEDVAKWCAACPECQKTREDRP
PRAPLQPLPVIGSPFARIAMDVVGPLPRSSAGNQYLLVIIDYATRYPEAIPLRTVTAPKIAEELIKWIARMGIPEEILTD
QGRNFMSGVLKTVCQTLKIRQLRTSIYHPQTNGLVERLNGTLKRVLRRCLQGDPRKWDLLVPLILFVLRDTPSDSLKYSP
FELVLGHRPRSLLQVLREGWELPVTQEQNVSEYQQAFQHRLRIVREVATENLRQAQQQQKERYDRQARSREFQPGQKVLV
LLPTSASKVLTQWQGPFEIVRRVGPVDYEVFRPGHLKPKQIYHINLLREWKQPEGWATFTEEEDFGPQGREVKPESRGPP
IRVGESLTPKQKEEVQQILKEFKGTFREEPGWVQGTYHYIQTPPGAIVRDRWRPIPHHLTSAIKKEIDKMLELGVIRPSR
SPWRSAIVPVPKPDGTLRLCVDYRRLNEIAIFDAFPMPHVTELVERIGSAKFISTLDLAKGYWQIPVAPRDRPKTAFGTP
WGLYEFIKMPFGLHGAAATFQRLIEKVLAPHTDYAAAYIDDIVIFTQTWAQHVRALRAVLRELKTTGLTANPKKCALAQQ
QTKYLGFLVGQGTIRPLADKVEAIKKFQPPQTPKQLRSFLGLVNYYRRFVPQFSDLAAPLSDALRGPQSKKISWTQDMAR
SFTRLKDALCKDVVIHAPNFEKPFILQTDASDTAVGAVLTQDDGGVRRPVAYASRKLLPAETRYATIERECLAIKWAVEH
FKYYLLGREFILITDHAPLKWLNTARMDNARITRWALALQPYKFRIMHQAGVNNIMADFLSRYSVASCETIADPEHKTGP
AGTGRVATPSNGPPRGSLRGG
>Gypsy-18_SMo#LTR/Gypsy 2344-8166 [Selaginella moellendorffii]
MYKHKPDPIKIRERDLRQKNREVKKEEIEKEKLEQQQQQILETILEKYDKEDKQIQVAESSNPAKDNKELNIEDAPEFEA
FEEAEYIAPEFYSNPDSPEQQLNQQSLQLQMAIINPATAIGNMISYPIFTGGKTEDANQHLKQFDQIVKMNKQEMHREIL
FPYTLKGKALDWHNTLDDALTHDEKVTQFKEQFQTGGTPEEHYEIIKNFKQKSREGIQDYTRRFKFHAKRCKDLITDKGK
SLSYIQGLKEIYRNMVAIAAATENPDDESVDTLSKEILTLEKRFKQFTKAIPSQTDDGSDDEEEEEIRIKTKKKTPKDQD
LKDIIRKISQTELKAGVWCTKCKNEGHTYSECKLQLPKCQICEREGHTAKKCRYRNTMEVSRIENAPRREPNPQYQGNWN
QNARPPRNQPPRYNNYYQRDDNLYNQRQNYYQRDNSNYNRIPPQDQRPNNYTGNYGRNYNTYQQRDGPHDNYQRPPPRNY
NYDQEPYRNYNQRPPQAQGYNYNQQPAPQQDNRPRQPYQNANRENNQGVNNQAPRPRPPAARNVEVEIDEPQTFEEPAIR
TITRQQYKYQQPDNLEEQDYDDEVEIIPETEWKKSKKILQAIQAELQEQEPQVIEDHDKPSNDQQTTSFSQEEHTSLAEQ
ILQHGITLTLQQILQIAPYLKSQILKICRPQIPDARTQEKQFPSKSEKEDNVKIQPGDYDDNVPCIDLNIGKNQINGAIL
DGGSGVNIIEHGICKAMGLGPIQPAPFNVRMADQHVVRPAGIIRDITIGIKGHKFKINFVVLKMPIEESSYELLLGRPWL
NKAVYAQYWMDHEICIQSDKGQTKIATTTTRKIPKRFQPIQAQEYNWQEGLDDLEEAKLLEAYPELRAFQEIDLHHVLPV
VAQDQHHNLNSMDQPLYSTKLHAQSQQRLKIKQQNEKPTLKPEQLQSKEYNIQIDDNPALQSGNDDFTPRINLNEETEEL
NLGLQEDPHNIIIAANLDKNFKIKAQQLLITYKDVFAWSYKDLKGIPPELCTHRIELLPGTRPIKQTAYRMNPNFADKVK
TELNKLQNAGFIYPIKNAQWLSPLVIVPKKNGKLRICVNYKKLNDVTEKDSFPIPFSDEILDAVAGHEMYSFLDGFSGYN
QVHIAPEDQYKTAFISPWGAYAYSRMPFGLTNAPFTFQRIITDTFQEYLTDFMRVFMDDFSVFGAKEKHLEHLEKCFIKC
RQNRVALNPEKCIFFVKSGILLGHVVCKDGILIDKAKTEVIVKMTPPMDLTSLRRFLGKMGYHRRFIQDYAKIAKPLTEL
LKKSQVYAWTQDCQLAFDTLKDKLTKAPILVQPDWTQEFIVQVDASDYALGAILCQRKTDNRDHPIYYASRRLSPPEMNY
TTTEKEALGMVYALTKFRHYLLSNKVKIMVDHQALLHLLNKTILTGRIARWFLLLQEFNFEIIHKPGKQHTQADHLSRLT
TGEQVTKSNDDLPDSHLFKVTTQGMLQDIYKFLTTTKIPNRYFTNDQRKQFVLRTRRYSVVGGKLYKLGHDNILRRCIES
QEEIKDLLDEAHAGRSGGRFAEEITARKVLQAGLWWPTLWKDATQHCQECDICQRTKFPPRKQTQELNPTTALEPFQRWG
LDFVGPIAKSSKGNQYILVATDYMTKWAEALPLKKATAKNTAKFLYETIITRYGLPREIVTDRGTHFLNETIDILVKEFI
INHKKSTPYYPQGNGQAESTNKTLKNILKKIVKTNLKDWDERIYDALWAYRTTYKVSTNSTPFKLAYGLEALTPLEYTVP
SLRMAIELGINQEESIKKRLAMLEKLDEERLSAIWTIEAIQARRKAYHDRKQVKKNKAHYKVGDLVLWYRGNVDKLGGKL
VHQWEGPFKITSIQIPGTAKLATLDDEKLQVVNLNKLKIYKQPQVLHTMVEYQKFQEKTFREIEENTFECMQTLRENLPQ
QECDLTLILAAGEEKSYGRCA
>Gypsy-20_DR_gag#LTR/Gypsy 170-1822 [Danio rerio]
MDFCNRFDVDGQNSLYVTGVEGSCSMEVISGFFEVNGEIEKVVRVPDEPGQTVGRVFIQYSSESSILKIEPDSLGDLPSP
NDTAVTWHVRTVRDISQEKLGEELAQRYLDELNTIPGSGRAAFLLALQKELQSVQLHSGYLQSPEAGPHTTVHSPHDLGK
INVEIDHAESIAAQPAVTNFSPSYVSHSPVHIDESMLNPPQIQKVVVEHVIRNESAHSPMRQSRIRTFSGRTPKPNGEVD
YETWRTQVDLLLSDPSSPDPQKVRIILESLLAPAADIVKHLGLNSSPSSYLNQIESAFGEVEDGEELFATFLNLNQNAGE
KPSAYLQRLHTLLTRAISRGGANATDSRKHLLRQFCRGCWDQTMIIGLQLEHLKDHPPSFSELLLSVRTEEDKRAAKLDR
MKKHLGSTRAAAHAHSVYGMPVNVEAQSEPFKKCQQDETQKLKGEIATLKKQVAYLLKKGEVKECEIKSEKNSREDTVTG
DCLVVSSNVPSEFTTMPRPWFCFKCGEDGHIANRCSKEPNPELVRKKNLQLRQRREKYRELHETSPLSLNL
>Gypsy-19_DR_gag#LTR/Gypsy 94-1892 via tfasty with Gypsy-16_DR_gag, 1 frameshift. [Danio rerio]
MEIVKRENIEIQNSVIVSGLTLSALDEELEDYLKRYGSVKSNLLIDNPESEYHHNTIVEFDCDTAMSNLEPSLPMDIQST
QDSNAVFHVRSLGSVYASAASSSLTEGYLESLVAIAQSSGKPLQDVLQMELQKMNALKLPASDSPRPDTPVQMFQNLKTL
SRKAHQISHPTSSISNNASTADTISLNLPTSALNPPGIQRVVLEHVVKTSDAVSSSNAAYRLKAFSGRSPRQNTEPDFET
WRASIDFLINDQSLSDSHKTRKILDSLLPPASDVVRHVGPDVSPTKCLELLESVYGSVEDADELLVKFISTLQNQGEKPS
AYLHRLHVMLSATIRRGGVTEAERKGYLLKQFCRGCWDNNLISDLQLERRKAAPPSFAELIVLIRTAEDKLLLKEERMKK
HLGINKHVSVPVKFRTATHQQSVYYADAIDEPRVENNHESLRQKSAKPKSKSDQSELDALKKEVAKLQAKISSMMADPIR
ENKKKASSDANEFNQLKKQVAELQAHLVPVVQGRCFEKSPASKNFPVRHRPNVMGPEMHKEERPTWNSTNRPRPGYCFQC
GEDGHLAVHCKNAPNPQRVEEKRRELRDRQAAWDLQNSLN
>Gypsy-17_BG_gag#LTR/Gypsy 104-1384 [Blumeria graminis]
MSSPKLHFANSAAFITHLQSSDEKTRNMMITELFNRGSEYQSLADKLTEELTATRLQVVESQAVANELRKEASANQDSAA
ERLQTSAVDKYRLSEAQKLIESLTAQLSSSSDPNSSSRPVAKSELFKIDEKFTGHDKSSYPSFQRQVKIALAQNSDRYSN
LQSKISLIYQNLGSAPKSFLERYLSDDGLFQFETLSAVWDVLDVSYKNPNEEDDARESLNRLRQGYQPFGMYLAEFQRLH
NLSGISDHKTLISCMRNGVTNEMRSCISQHQDIHKSYSFDDYVSLCKECVVRMELDRPSNNRLMNPIPSRANNPNSFWGA
NPTWRGNHQAPHKAPTRSGTNITGANMVPLGGDPMELDQAGLSHIGPDGHLTTEERQRRFRLNLCMRCGNPGHRAGNCLI
KGKEKAIAQLELEYEHTFEPEFSQLKD
>Gypsy-15_DR_gag#LTR/Gypsy 112-1998 [Danio rerio]
MDVVRRENITVANSLIVSGLTLTELDNELEAYLLRYGSIRRNVIIDDPASDFHKLLIVEFNENSAFQTLHPHLPLTLGSL
SDPSITFRVRALAAVCDPPVVSTATEGYLEQLKAIAKESGRPFQTVLQEELEKLKETHSVDQTLAESQKIEVADTQSRDN
TLISESPNVAEIDPQDSESKNPTKNRIIYVSPPLPETTADDNLTTVFPSSSTNIMGDPQVQRMVVEHVVKTSDAMMSQQT
SIRLRVFSGKSPRPPNEPDYDTWRASVDYLLNDPSISDLHRTRKILDSLLPPAADVVKHVRPPALPAVYLELLESVYGSV
EDGDELLAKLMGTFQNQNEKSSDYLHRLQVLLSAVIRRGGIKESERDRYLLKQFCRGCWDSRLIVDLQLEKKEGQLLTFA
ELTILIRTQEDKNASKEERMRKHFGMTKPANVYPKTRAISNQVSACACDVSSTYSSEAGSLKKQVAEIQAQVATLKQSPD
KKSIKGQSERAELVALKRTVEDLCVQVAAVKASVAEGLKGNNPEQSEIARLQRQVAELQAQGIVQKAYQAPHMQRSPGTE
IGRALKKEPLRTNRPRPGYCFRCGDDGHLAVNCENPANPPKVEEKRLKLREQQHQWDILHGRPAQFLN
>Gypsy-15_BG_gag#LTR/Gypsy 186-1737 via tfasty with Gypsy-52_BG_gag, 1 frameshift and 1 stopcodon. [Blumeria graminis]
MDSDPRATEIINAFQKSWPNLSAAIEGHQFPNDSNPASLLSSIDSTTNTPETILFCSLLQCFDSKIGEIKNTNMTEIISL
NSTISNLNLARSLDNNKVSTLNDKISSLQSxINKLQVDAILSMKPSNIDSTNTRLRRTRSDPEKFSAAQTSTEKRQTLYE
SWKIQIQQVLIVDGSCFPGNFNCISYITSQLSGKAWEAFKDGVQKMNSYPSNSEKWHWRTQTDLWQVLDRRYILLDTTQM
AKNALDTLYQDKPTYGDFKADFDHYIERAKYDDRTKVDLLRKRLNRKITGVINNQVNLPDSDNYTGWSDMINNIARNIKQ
QEHILMLQSSSNSMQQNYHPTDHFLPCAGTSDSKDPMDLSRISISSAERKFRMENGLCLACGQTGHMAKDHHRMIDPVPM
PKRPTNQWISCERNGYKQFPTFNTHDLPSTEYLTPENQPLPIPMMYYPPPRFLPKYHHQSPDQFSNSQLLDPDAPVRSRL
RVLNGNHGFEEHCQSQNSGDKKQAYRNCEQLKDQPLV
>Gypsy-15_DWil_pol#LTR/Gypsy 1747-4833 [Drosophila willistoni]
FFRPASFLPYIIKQLHGRTIKILVDTGASKNYIKPLSELEHIVPVQSPFQVKSIHGSSSVTKKCKISLFGEKSFFFILST
LADFDAIIGLDLLRKVNATINFTKSKIFFNGGSEDIMLHKCADVNFIEINDEDVPLAIKEKFKKMIKLRASSFADPKIAL
PFNINTVATIRTQGEPVFSRPYPYPLGVSDFVNTEIKQLLKDKIIRPSKSPYNNPIWVVDKKGVDELGHKKKRMVIDFRK
LNQVTVSDKYPIPSITTILSNMGKSQYFSTLDLKSGFHQIELAEGDREKTAFSVNSGKYEFCRLPFGLKNAPSIFQRAID
DVLREHIGKICHVYVDDVIIFSETKEDHVKHIDIILQCLGDAGMRVSQEKSKFFKKSVEYLGFVVTRGGIKTSLEKVQAI
QSIKPPTSLYELRSFLGLSSYYRCFIKNYAAIARPLTEILKGDNGKVSTNHSRKVKVELTATQLQTFDRLKNILASEDVM
LRYPDYKKPFDLTTDASGHGLGAVLSQDGRPITMISRTLRDNEPDLATNERELLAIVWALKTLRNYIYGVRDLNIYTDHQ
PLTFAVSDRNTNAKIKRWKSIIDDHNAKLIYKPGKENKVADALSRQNINALQSQESDIATIHSEESLTYTIDSTDKPVNC
FRNQIIIEEADFPSVRTFLLFQTKTRHVIQVSDRSTLMQTLQDVVNADVVNAIHCELPVLAFIQHSLVEMFPTTTFRYSK
YLVSDIPDRTEQREILTTEHNRAHRAAQENVKQVLRDYFFPNMNRLATEIAANCKICSVAKYDRHPKKHILGVTPIPSFA
GEILHVDVFSTDKKLFLTCLDKFSKFAVVQPIASRAIVDIKAPLLQLINLFPKIKTIYCDNERSLNSETIKSLLSNNFDI
HIANAPPLHSTSNGQVERFHSTLTEIARCKKLSSQTNETVDVILMATIEYNRTIHSVTNKQPIEIVHTSTAEMEATIRKK
LEKTQIKQLEQGNKKRAEKRYRVGDKVWVKSNKRLGNKLTPLYTEGTVEADLGTSVLIKGRVVHKDNLR
>Gypsy-16_AMi#LTR/Gypsy 23-4208 via tfasty with Gypsy-26_AMi, 1 frameshift. [Crocodylidae]
MEDPDLAPYANMQPAATGPADVLGQNLQVLTQILDSQQQMMGRQQDWFRHGLASFKMPKMTKDDDPEAYIEAFERHALMT
GLDQGYWASQLGALVVGKAQAAYRALSREDARDYELVKQAILYRLEINPEHYRRLFRAKKGPDERRPRVLLQLLRDLLDK
WVNPAGQDREALADQIVLEQFQNDLEERTQRWVRQHAPLTCEEALKLAEAFTASEASYPRERKSPGYSPVNPKEPERRRP
PGRGATRETVCFRCGRNGHFSRECPNQVVERWIPTDRSRAPTERRRGPESGEPMDCSYAVGEENAAWSRPVVKAWVEGRP
VQATLDSGCAQSLVRSDLVGSQGRRGARPVRVACLHGETRLVERQWVRLRVMEHQGELLVGVVPRLACEMLLGRDWAPVY
DVLDRVRDTEVARRRIQDCEGWLGETQENEESADEANELDLNNFTSCLQFREAQAEDQEIRELQEHARGPQDIPAPPPEG
PPYFEVRNRLLYRVQGERRGETLGSQLVVPTRFRQTIWRLAHASPTGGHLGRDKTLARISRWFFWPGMGEEVARQCAACP
ECQKTRAERPARAPLQPMPIIDTPFSRIALDVIGPLPRSSSGNQYILVIVDYATRYPEAIPLRAVTAPRIAEELIKWIAR
MGIPQEILTDQGRNFMSGVLRAVCRTLQIKQLRTSVYHPQTNGLVERLNGTIKQVLRRCIQGDPRKWDLLLPLVLFTFRD
TPQDTTKFSPFELVLGHRPRGLLQVLREGWEQERGPSQEPKTYQREFQQRIKVAQDLARENMREAQARQKEKYDSHARER
EFEPGQRVLVLLPTSTSKLLTQWQGPFEILRRVGPVDYEVHRPGHLREKQIYHVNLLREWREPEGWVAFSETDNEDLGPQ
GLGREAVPTKEGPLVRIGEELVPEQRQEAQSLIEEFREVFREEPGWVQDSFHAIKTPPGAIVRERWRPIPHHLLEAVCRE
VDSMLKLGVIRPSRSPWRSPLVPVRKPDGSLRLCVDYRRLNALAMFDAFPMPRVAELVERIGDAQYISTLDLAKGYWQIP
VAKEDRPKTAFGTPWGLYEFVRMPFGLHGAAATFQRLMDRILAPHAEYAAAYIDDIVIYTRTWAQHKRALRAILTELRRA
GLTANPRKCALAQKETKYLGFLVGRGMIKPLADKVEIIRNFAAPQNCRQLRSFLGLTNYYRRFVPHFSVLSAPLSEALKG
RKTGAVRWTEEMTRSFKKLKQALCEEVVIHTPDFRKPFILQTDASETAVGAVLTQEDRGSERPVAYASRKLLPAERRYST
IERECLAIRWAVDHFRYYLMGREFKLITDHAPLRWLSTAKTDNARITRWALALQPYKFYIVHRPGKDNAVADFLSRCDGE
DQTGARGDQTDGRASLTGTTRNGTEEAPQGILGGG
>Gypsy-15_SMo#LTR/Gypsy 3612-8857 via tfasty with Gypsy-19_SMo, 5 frameshifts and 15 stopcodons. [Selaginella moellendorffii]
MSMMAIAGTTIGTIITYPSFSRIKGEDPQLHIEQYTEAIKLNQVDGQEKNLFPYTLKNKAKDWYYDNDVKKLGTFDEQTK
FFLKSFLHGNKPRRKLYELQKLHQGKSETIEEYTTRFNKRYKHCKDLVSDKMRLHLYIxGLKKIYHEHAIKRAHVDFDDL
KKAMIAYQDLIKQYDMVDMVKSDEKTTPIDKETSHLRSLKLQTNLKQGIWCTKCKNEGHSKEECKLxLIKCQICEKEGHL
AKECRTLFKQLGGQQAAxVDKTTHRQSYPFDDRSYCRRNDYNDNRSAKHEYPCAERQDDHRDYPPRGNFRDYPPSHEENR
PRDYNQPREYDQPRGYNRPREYERPKEYDQAKTLTRYPRLYNQAESSSKNDRPPKDTQPAARHVEVEWSDIEELPSVCVM
TKAQQRRVESESQDEGSDDEVEIIPNSQWRQKKNINAEITxQLQDLQPQVNLENGDSNTESLTPLQANMNLPLAQKENPI
LKLDGKDEKKVVKGILNAKLHSLxPTSHYSTLLRVVLLRELPKKEETLIPSIAIVIELGDCDDEVPTIDIKIGKNLLSGT
LIDGGSSVNILEESICKELGLGPIQPAPFNVRMADDRSVRPIGIIRNVLTNVAGLKYKLNYVMLKMTRRDSTYKTLLGKP
WLKIACTNQDWKNGFLCIEQGNQKRSVPITSTIxLERKDxPLKTQSYDWEEGLDDFQEQQILKAFPEIEPISKVDLYSIL
KEVPKQEAPRLKIGSAIRDFSLKEDPAYKIDQxRNYVSHVSCDQPLEQINLADENNPYTITIAQGLQSEFHNQAINLLKD
YKDIFAxSYTDLKGIPPELCTHRIEILSGNMPKRQMPYKMNPNYQGKVKEEIDKLLQARFIYPIQNAQWLSPLVIVPKKN
GKLRVCVNYKKLNDATKKDMFPIPFTNEILDSVAGHEMYSFLDGFFGYNQVEVAPENQHKMAFISLWGAYAYCKMPFGLC
NALFTFQRVVMDTFREYLTDFMRVFIDDFSVFNSKKEHLVFLQKCFQKYREYSISLNPEKCTFFVNSGILLGHIVCKEGI
LVDKDKTQVIETMSPPHDLKSLCCFLGKVGYHRQFIKAYAKIAKPLTDLLKKDTPFIWNENCQEAFLRLKQCLKEAPILI
KPNWTKEFHLQVDIFDIATGAILSQTQGDQKDHPIYYASRRLNPTEHNYTMTEKEALGVVYALQKFRHYLLATKVIVFAD
HKALLYLINKPCISAxLTKWFLLLQEYNLEIVHRPGKFHEQADCLSCITTKSPNTKVDKLPDAHLFAIFVPTTWLEDIQI
YLSIGTIPPHYNLPEKKKLFVLRTxPYSIVGEHLYKLGIDGTLRRCVNRQEERNEILREAHLGPSKGHFANEITARKVLQ
AGLWWPMLWKDTAIFCKNCDICQRHKLPPKKQIHELNPTYPYEAFHKWGLDFVGPMVTSSKRNKYILVATDYVTKWAEAM
PMKxASAANTAKFLYENIIVRFGLPKEIVTDKGTYFINETIEIFIQEFILKHKKSMPYYPQGNGQAESTNKVLKTILKKI
VKDNKKDxDEKILDALWAYRTAYKVSTGMTPFRLTYGxKALTPMEFIIPSLRIAIKNGLDEKEALKQRLAKIENLDELKL
RAIxTLHAIQKAKKARHDRQLKISCELKPRDKVLWYQGKIDALGNKFERKWNGPFILSKISAPGTAEVHTLNRDDTAIVN
LNRLRKYHEDISINIIYILGYKTMDKLVDEALARIHCDELPKCIDRVANWMKDRGLEKFYKATSNFVEP
>SUTRVLEP_pol#LTR/Gypsy 1958-5878 gi|161636|gb|M75723.1|SUTRVLEP Tripneustes gratilla retrovirus like element (sea urchin) [Tripneustes gratilla]
MANLSQPSPLDLKGNISENWKRFKQKFTLYNVASGMSEKDEKSQTSMLLHIIGDAALELYNTFVFAEGESMKLEKVLDKY
EEYCMPKRNLTYERHRFFTRSQLEHESVDQYATELRSRAQSCEFSSLKDSLIRDRIICGILDAGLRERLLRQDDLTLDKT
LQVCRAAEQTRTQAQALSSAGENASIPVDVDSFSKTKKKFSGSKSKSKQSKPQDHTNNKTCSRCGNRHSKDKCPAQGKTC
KKCGKQNHFAKCCRTPVAKVNELKHLEIDSDSFTICSVDSQESKEEWKVNLLVNSEPVEFKIDTGAQANLLPETVYHKLK
TKPKLQKAKVKLTGYYEADIPVMGRCCVQVEYKGNRRSVPFLVIPGNRQPLLGLRTSEELYLVKRVYHVEKQIEQNTDKS
VVQDYQDVFVGLGCLPGKHHITLKENAQPVQHACRKVPFPLQKKLKEELDKMERLDVITPVDEPTDWVSSLVVVMKKNGQ
LRVCLDPRDLNRAIKREHYQLPSRAEITAHFAGAKYFSKLDASSGFWQIQLDDESSKLCTFITPYGRYKFLRLPFGICSA
PEVYHKIVHQMFAHIPGVNTMMDDVIVWGTTQQEHDNRLREVLSIARRMNLKLNKDKCEFSVKKLTFIGDLISDQGVQPD
PKKVSAILNMERPKCRKDVQRFLGMINYQGKFIPDLSNKTAALRSLLDKKNIWTWDHAQEDAWNQLKQSLIQEPVLHFYD
CNKPTKLSADASKNGIGAVLLQQHDENWVPIAYASRSMTDAETRYAQIEKELLAITYACERFHQYIYGQQVEVETDHKPL
IPLFVKSLGDCPLRIQRLLIRVQRYDLKVMYTPGKYMYTADTLSRAVDPKADMNTETEEDIRIYVDTIVKSMPVTSNKRN
QIVQETQKDDQLQELLAIIRNGWPETKQQCPVRVREFWNIRSELSEAEGIIFKGSKIIVPTSMRRFMLDKVHEGHLGIEK
CKKRAREVIYWPRINADIAEMVQSCTSCLMYKPKQQAESLHPHAVPSRPWEKVAVDLFTLNKREYMVIVDYYSQFIEVCT
MTSTSSKAVINHMKAIFARHGTPCELMSDNGPQFASQEFKSFAKEWDFHHTTSSPHYPQSNGLAENAVKIVKNLLLKSQH
CGQDIHRALQVYRSSPLACGKSPAELLYNRRLRSNLPMLDTLLDNQQIDTKSVRGRKEEQKVKQKERFDKHAHDLSNLKP
GDHVILQDMKTNTWSKRGIIKSVLNRNRSYQVETETGEIRRRNRRHLRLVPPHQAKSIPPTQDDYELDDSTEDATKQPSS
DERATTSSNKTTRSGRVIKPPERLNL
>Sushi_pol#LTR/Gypsy 907-4470 [Takifugu]
FLPYQHCRPASSHPLAIPSSPLPQSRRGTHADRPVPSLTAGAGAKTPRPVVPVLRKQRPLHPSLPRPTKRACSPVGGVLV
SRAVIPQPTEQHNRLFPATLSWDKESIPVSVLIDSGADESLMDFLSRVKLAFPWFLSIAPCPPRRSMAALWVTSTHRTIP
LTLTLSGNHIESTPFLVLHAPTAPLVLGRPWLERHDPHISWASGRILGWSVACHANCLRSAPSPSSNPRPALTPPDLSGV
PPIYNDLAPVFSKDNALSLPPHWPYDCPIDLLPGAPYPTGRLYNLSIPEKEVMRNYITESLASGIIRPSSSPLAAGFFFV
AKEDGGLRPCIDFRKLNNITVKNKYPLPLMSSTFEPLTHARVFTKLDLRNAYHLVQIRKGDEWKTAFNTHLGHFEYLVMP
FGLSNAPAVFQELVNDVLRDMINVFVVVYLDDILIFSRTMEEHHQHVRLVLQRLLENRLFIKAEKCIFHSASVGYLGYIV
EEGRVRADPAKIQAVVEWPRPTDRTQLRRFLGFAGFIRRFIKGFSQVAAPLSALTSTSRPFAWTPEAETAFSALKDRFTT
APVLAHPDPARQFIVEVDASDAGIGAVLSQRSEADQKIHPCAYFSRRFDPAERNYDVGNRELLAVYGALVEWKHWLEGAK
HPFLVWSDHKNLTYVRTAKRLNPRQGRWALFSRFDFTLTFRPGSKNIRADALSRQFPEEFPGAPRDPDTIVPPARVIGVI
SWPIETAVEQAQRDEPYPGNGPQGRMFVPSSVRPQVLEWGHSSCFACHPGVRRTAEFVQRRFWWPNLQEDVREFVGACTV
CARSKASHRSPAGLLHPLPVPSRPWSHVALDFVTGLPVSQGNDTILTIVDRFSKGVHFVALPKLPSAAETAELLVSHVVR
LHGIPLDVVSDRGPQFTSRVWQAFCKGIGATVSLSSGYHPQSNGQAERANQAMEAALRCVTTSNPASWSKFLPWVEYSLN
AMESSATGMSPFQCFLGYQPPLFPQQELEIAVPSTRAHLRRCRRIWKTARKAILRATEQSRRSANRRRRPAPAYRPGQKV
WLLARDLPLQTSQTSSRKLNPRDIGPYTICSIINPSAVHLDLPAALKVHPVFHVSLIKPFSTSPLSPPAPIPPPPQVLSD
GEPVWSVNKLLAVRRRGRGFQYLVDWVGYGPEDQSWVPPSYLADPSLLEDFLPRAPGCSWAVVRCLP
>SZ-10#LTR/Gypsy 973-5657 (ZMGypsyX1_ZM close) [Oryza sativa]
MGSNVEIEDCVTMAQFNEMKQSMEALTANVQALMNRLPEPPPEDANASHHGEEDEESEGEAAARLAREQRRRRRDRVVAN
ARRPPHPGRGNGGRGADRGREHGLEESGTDEEVEQPHRDDRRHRGNRGRNQPNEERFGKLKFTMPKFEGGSDPEVYLTWE
LKVDKIFRLHNYSERKKVAMAALEFDGYALIWWEQMLNEREEAGQGDVRSWAEMKREMRARFVPKHYRRDLFDKLQNLKQ
GSLSVDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIVEFQQYRNLIELVHQASKAERQLQQDMKSNRGVSFST
KNAASGSKFTSRGSGNRGAFSSSSGGARSSNYGTSSGKDLAAPNERKNAANTSSTSVGSSTKSSGIQCFKCGGRGHVARE
CPNNRTIVVNDQGEYESTSEEEQEDSEEENNLEKDICEFESGAALVVTQILSVQMSDAENGQRHNLFQTRAKVQDKVVKV
IIDGGSCHNLASKEMVEKLGLKLLKHPHPYHVQWLNNSGSIKIAQRVKVPFKIGEYIDTMECDVAPMTVCHMLLGRPWQY
DRSSLHCGRTNQYTIKWKGKELILKPMTPQQILAEHLQKSSEVRNESAKEGQKNNLSAPHKSVSESHKPNMRDNKKREGE
NLVMIATKSEMRDVRRNPEQVLFILVCKDTLLSANDLTSVPSVVARVLQEYEDVFPEETPVGLPPLRGIEHQIDLIPGAT
LPNRPAYRTNPEETKEIQRQVQALLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITVRYRHPIPRLDDMLDE
LSGSMIFSKIDLRSGFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKFVVVYFDDILIY
SKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFCTDQVVFLGFVVSGLGIQVDESKVKAIKDWPTPENVSQVKSFRGLAGF
YRRFVRGFSTIAAPLNELTKKGVAFQWGEPQEKAFQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLMQNGQPVA
YFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEFIETFPYVVKYKKG
KENIVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLL
QETHAGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPR
TKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTT
CHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPLQERSDM
EASKRATYVKKIHEKTKEAIEKRSKYYAAWANKNRKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDN
AYKIELPEDYGVSSTFNVADLTPFFGLEDSESSRSTPFQEGE
>TEKAY_ZM_gagpol#LTR/Gypsy gi|18092337|gb|AAL59229.1|AF448416_9 gag-pol [Zea mays]
MQILQGLTAAVQQLQQNQQIQQPQQQQYAPPARDKHRDFMSHHPPTFSHAVDPLDADDWLKVIGKKLDITQCNDREKVLY
ASGRLEGAASDWWDAFTAAHPNADTITWQEFQENFRSHHIPSGIMKLKKEFLSLTQGNMSVSEYRDRFTQLSRYAPEEVD
TDEKRQERFLEGLIGPLNYQLQSHTFPNFQTLLNKAIGLESKRKELSDHKRKFQGQSSRNTRPNNAQGSQFRSGNQGGNN
YQVQRSGQQGQRNNQSQNQQRSNPQTNQRSGGNSQNRQGGTNNTQARNNAPVQPNGCFKCGELGHYANNCPRRNQQTPQK
SNNQRNDQNTPARGSAQNKAPQNQSRGRVNHVTAESVPEDADIVYGMFLVNSIPASVLFDSGASHSFITASFVEKHNIPK
YPLKRILHISSPGGDMKATHSCPHVNIKIQGIDFTVDPVVLGSNGIDVILGCNWLKSCDGVIRCANGTIMLTSPQGERIQ
VNIDKSTDEKGKTVINHLEEKPLENIKVVCEYPDVFPEELPGMPPDRDIEFSIELLPGTAPISKRPYRMDVKDLVELKKQ
IEELLEKGFIRPSSSPWGAPVLFVNKKDGSRRMCVDYRSLNEVTIKNKYPLPRIEDLFDQMKGAKVFSKIDLRSGYHQLK
IRAEDVPKTAFTTRYGLYEFLVMSFGLTNAPAYFMNLMNKVFMEYLDQFVVVFIDDILIYSSNEEAHEDHLRLVLQKLRD
NQLYAKFSKCDFWLKEVAFLGHIVTDGGIKVDPGKISEILNWKQPKDASKIRSFLGLAGYYRRFIEGFSKLVKPLTSLLE
KGKEFKWDEACQNCFEELKKRLTTAPILVMPDIHKGFDVYCDASHLGLGCVLMQEGKVIAYASRQLRKHEKNYPTHDLEL
AAVVHALKIWRHYMIGNKCKIFTDHKSLKYIFTQKELNLRQRRWLELIKDYDLEIQYHPGKANVVADALSRKGQVNNITT
HLMSQELCWEMERLNLGFLNNVEATVMEVESTLEEEIRKGQESDEKIKEIKALIGLGKAPDFTEDEQGTIWFKKRICVPE
IEHLRQLILREAHDSAYSIHPGSTKMYQDLKEKYWWYGLKRDVATHVALCDVCQRVKAEHQRPAGLLQPLKVPEWKWEEI
SMDFIVGLPRTRDGYDSIWVIVDRLTKVAHFIPVKTTYSGAQLAELYMSRIVCLHGVPKKIVSDRGTQFTSRFWKRLHES
MDTKLNFSSAYHPQTDGQTERTNQVLEDMLRACALKHGRSWDKSLPYAEFSYNNSYQASLKMAPFEALYGRKCRTPLYWN
QTGESQVFGPEILQEAEKQVQIIRENLKTAQSRQKSYADNRRRELMFEVGDFVYLKVSPMRGMKRFKVKGKLSPRYIGPF
KILERKGEVAYQLELPDRLSDVHDVFHVSQLKKCLRVPEEQLPMEELNVNEDLTYSEYPVRILETSRRITRSKVINMCKV
QWSHHSEDEATWEREDELRAEFPQLFSEVS
>TCG3_p1#LTR/Gypsy 264-824 (no matches yet) [Candida glabrata]
MRGAVRKFRTLPDKVLINNIRRATDDDIKYDLTKIREDLPSRITIKTFLKAIDNHYERSSKETVRHVNLIDRPKFITAAS
LRRARDAFENICDEENMTCAIYATKHYLPPRIERQIDDLHWPSPSTILDELDNEIEKRKAKEKYFKSNKYKNKFNKRRYN
PKRFNNNRRNNNSSGGGFSSNKNTKN
>SACI-5#LTR/Gypsy 164-4000 (1 stopcodon) [Schistosoma mansoni]
MKIPWPKEFEDGDVMSFLKEFEAVAELVGVKEPKAKTVVLGTLLRGRAKAVYDSLDGAGGKTTWEAVTERLIVEFDSPVD
REEALQKFRVAKLPIDGDPLVLAVELTNLLRRPLPNLDEESEAQLLASQFIESVPVAVSQQLRLVHAAQPMDISELAKVT
RQLMTRTVAPVACESQEISSIEKKIEELQHEIAALRVIRKRNDKCFACGGTGHWKINCPTRRKRRYFRRYVFPSYSRDLG
VVALVDRGAVYARVNVNELDLVCLIDTGAAVSLIGKEQCKRFKPCKVAVHTIGGHMLEVLGVSNSIVKVDGSAISFPFVV
TANLSRPILGADFLREVKAVVDLRSGKVVTKYGSFPIHESSEVAEVRVATAVPTKKPSITELCKKYAKLFTGEGEPYGFC
DKVKHEIPIKNDGGSIFTTRRVPVHLEAEVNRQVQEMLKEGIIEEADSPYSSPVLLVKKPNGKYRFCVDFRELNNITELK
PCAMPTVVETLDRLQNATVFTVLDLRSGYWQLPIKESDRSKTAFTIRDKQYQFRRMPFGLAGAPFTFRRLMSLLLRDLDN
VEVYGDDVVVYSQTETDHAKHVEAVLKRIEEFGLRINKDKSQMAKSSITLLGHKVGNGEIKPLPEKILTIKNVAVPNSRR
KLRQFLGRAAFYSRFIKNFNEIAAPLYKLLSNTKFSWTETAQQTFNQIKNVLDDRQMTLRLPELEKPFTVTTDASDHGIG
AVLSQSNRVVEYASRVLTPAEQKYSTIEKECLAIVWAVDKWRPYLLGRRFHIETDHKPLQWLQTARDPRGKLARWMIRLQ
EYDFSIGHVPGKENVMADYLSRPDMEAELPLTAYAVNSIEGDPLELVRQQKSDPKLREVIRVIREEADVDKRAMDKEVIM
LLRQKERLKVNTYGALVWQDDDKNWVAVIPKDWRRKMIHECHQVAHTGIARTTDLLRQSAYWPGMRDDVAQYVLTCQQCQ
LMKSDRYMQPPLQSVPVTAVGDLWSVDVMGPFPQTDSGNRYLLVMTEHATRWVDAVPIADQRAKTVTEVIIRHIVAGHGV
PKMILTDQGPCFESDEFKARLKQFGIKRIRTTPYHPQTNGLTERNNRTLKEWLASKGGNWEKELPLILLAHRASIQGTTK
KSPFLLMYGRQPRLPMHSKTWPQQQKWTATRLRKxRTEAIKNVKEKQISDIKKAEQQRRAWKPFRVGDLVKCRERRANTE
GGPGSGKLIPKWEGPYIITERRGPVYTIRREDKQKRVNASQLQRWFQEHHEHESRTAPKETMVRRSERLREQLIKRGDE
>RETRO2A_p2#LTR/Gypsy ReverseOrf: 6884-10120 R) [Oryza sativa]
MARGSALLDGSVLPPSRIVSERHAGLPRRFMPESATGREIVMLGEGRPAPDYPGRSIFFLPFAMAGLVPPFSSFFMDVLE
FYDLQMAHLTPNAVMTLAIFAHLCEMFIGVRPSLQLFRWFFTVQSVSPPSVVGGCYFQPRGPVLNRYIPCVLRKKWDDWK
SDWFYTPLANEARLRLPSQPPALVSSWRAPVDLGEDYDAVLDRLAGLRSQGLTGAMVYGDYLRRRIAPLQRRARSAWEYT
GPEDYMRTHQGARWDWAPEDFKIVVQRVLNLSSAEASRIPQEILPLCSDPDRASILTIMMGVGASEERAPKGHDGAGERR
RGEQSAPGGGRASGPRVGGSGSSRPADAQGKRKLGGTPPPSPLRGGGAARASSRRPEGAAPTSQPEGERKKKRLRKTGET
EPCRGNLISPPRWSFNRPPRRFVSLSLQPSFSQKEVFSYSFCLSSGFLFCFSDAPSHSSRHPKSGQSEAEDPAAAEERRR
ESDRREAADRLREAEEAAREAARVRQAEEAAREEAARARQAEEAAKEEADRARQAEATAAAGASLGPTPSGGPQATSSEA
ARDEAAGASPGPTSPGDAQDQTGPGDIPEPSASSGGPSRVAFSPRRLFSSSSVAPLSAEPLLQALAAANTAVLDGFNAQV
EALRAERAELEAAWTRVEEGRRSVDAMVEVGRKAHRRHVSELEARKAALAEVAREVEEERAAALISTTAMVEAQDTLRLQ
HASWEAELKKKLDAAQGVLDSAAARERRVTKTEAASRRREEALEARAMALEEHAGAVERGLADREAAAGLREATLAAHEA
ACAEEESALRLREDALAERERALEVAEATTQRLADSLSLREAAQEEQARRNLECVRAERAALEQRAADLEAREKELDARV
RVGGAVAGESDLAARLAAAEHTVADMQRALDSSIGEAEALRLAGEMGPDMLWDSVSRMDRAGRQAGLWKGQTRMRPTNLE
GLAPHLNRMAWVLERLPEELEKTIKSSSRDLARGAVELVLASYQARDPNFSPWMALEEFPPGTEDDARARVRDAADHIVN
GFEGSAPRLAFAPSSDEEGDASGEDDGGDEAGDPGALE
>REINA#LTR/Gypsy 57-4787 via tfasty with SZ-56, 2 frameshifts and 1 stopcodon.  [Zea mays]
MAPPKPDDPLAQLLAKIEEGNKETHRRMESMQAAISSMEATMKGVVTEQGDVQKWKPEIERKVTEFAEVLKKTQAKADLK
SLIGASNNKDPVVDGALGSVHQEIPSLEAAHEQFRHRSCSPLPETGARPMRLDTSSGRSTNYPPQFGNIPWSAGEMNSMG
NWSQCSGSVAPSMTFPVFDGNNPKLWWQRCETYFNFYSVARGMWIRMAIMNFVGTATFWLQSVENRLGEMSWEEFCGCLN
ARFGRDQHSMLIRQFYHIHQTNSMSEYVEQFDVLLHQLLAHEGQLTPAMITARFLDGLKEEVRSVVVIQRPNNLDAACSL
ALLQEDVLMHSGRREHRRQDGGGFSKPLQKGTTMAGSSLSATTNRVAYPVSASRLEDSKLTALKAYRKAKGLCFKCGGKW
GHAHRCSNTVHLHLVEEMWALTVTGEEEEQTKFVTEGGIDSDGEAVLSISVNAVSGSEGNRTVRLWALIQRQQLLVLVDS
GSSTSFMSDHLMGKVTGVQSILEPVQVKVADGRCLWSKYFVPGCQWLCGGITFHTDFKFLPLSGYDIILGMDWLEAHSPM
KVHWVGKWLEFEYESRVVRLQGVVPKLSTCHQLSKVQLNWILKQEAWEHILELSVEDKGQFQNIPFEMAQLVEEYHELFD
KPAGLPPPREVDHTIPLLSGAQPFRLRPYRYTPQxKNEIEKQIIEMLEQGVIQHSSSPFASPVLLVKKKDGEWRLCVDYR
RLNAHTVKNRYPMPVFDEIVDELCGTKIFTKLDHRSGYHQIRIKEGDEFKTAFQTHNGHYEYRVMPFGLTGAPATFQDFM
NKILTPFLRKCVVVFLDDVLIYSRDMEEHVLQVKQVFQKLKDHQLKLKLSKCRFAQTTLEFLGHIISAEGIATDPEKVQV
IRDWPIPNNVKEVRSFLGMAGYYRRFVAHYGIISKPLTSLLKKDQIFVWNDEAQKAFEALKAALVQAPVLSIPDFSQQFV
VETDASGSGIGAVLQQKGHPIAYISKALGPKNLGLSTYEKEYLAILFAVDHWRPYLQHGEFFIKTDQQSLTHLEDQKLST
IWQQKAITKLLGLQFRIIYKKGVENRVADALSRRPNLCTDGSKLQLNVLATSTVVPSWLTEVTNSYEENEEAKSILSTLA
AGDTIEPFTLVSGVIKHKGRIWLGSSNQVQLKVMTALHDSPIGGHSGFPVTYHRIKKLFYWAGMKGQIKEFVQSCEICTK
AKADRNRYPGLLLPLPIPDQAWQVISLDFISGLPTSRRFNCILVVVDKFSKYAHFLAMSHPFTALSVAKLFLSQVYKLHG
LPLSIISDRDPIFTSNLWQELFKLVGTKLCLSSAYHPQSDGQTEWVNQCVEAYLRCFVHGCPKQWSNWLSLAEFWYNTCF
HTALGQSPFEVLYGHTPSQLGLSTIEQCQSADLQTYLATRQLMLQRAKLHLQRAQDRMKKQADKGRSERVFQVGQRVFLK
LQPICQSSMGSRLNTKLSFRYFGSFLITKQVNPVAYKLALPEGSAIHPVFHVSQLKSAEETRITTDATMPDLLQELKIPT
EVLESRLLRKGNKVIPQLLIRWSNWPASLSTWEDEHAIKQQFPRAPAWGQAVCQGEG
>Rover_DM_env#LTR/Gypsy 5288-6559 via tfasty with TOM, 2 frameshifts.  [Drosophila melanogaster]
HHNTFSYSDKPIQIPSEYEHHCLRINLLDIDNLTHYFNTKVTNYTHIPQIKLLHNKMLRELNAITLHQTNRQKRGLINIM
GSAFKYLFGTLDNNDRIQIHNQLESATNNSINIHEMSDIIQLINSNMQKIKEFEDEHNNREQMLYELIQFTEYIEDIAMG
MQLSRLGLFNPKLLNYDKLENVDSSNILQTKTSTWINTNQLLIIAHIPTKQKTIHTINIIPYPDNNGYQLDHIDKDTYFE
EQDKIYNQNYQEINNECIKNIIKRTNPICNFVPITVEQIIKYVEPNSIITWNLNNTIIEQNCQEINKNVTVNGNKIITIK
QCKIKIGNIILNENKLKHPEINLTPLYTPLSLIKIKPIEHKDIVQLISNNNITVCIVVSIISLTSCIACIYLKLKNKIIL
ESQDANPTASPRLRASTPIEGVEA
>RTIP1_gag#LTR/Gypsy 461-2697 via tfasty with RIRE2_gag, 3 frameshifts and 10 stopcodons.  [Ipomoea purpurea]
VGEKTAGTKRTLRAPVEPTVGRPHVSLTVRGKAGRLFAAWSSPPETITNPPSQRLAKARNRQETTPKRGSKWPTxPKRxE
IxKRQVEGRTKAPGRALLTALPFSAEIMAFKLPGDFKFPEQATFDGSGDPENIYxVYQAKMQVLGVRDPVMCRAFLPTLK
GSAQRWLVGQPPGSIHSFEELADRFMSHYAANIKPQKDLTHLGDIHQDEGESLKAYLARWxKEIQSIEEVEDQTALTFFI
ESLRSGQLYRDLRDNRPATYAEAIQMANKRANTEQAMKHKRxREVGGSAAEKGRGPRREKGARMxPGTRGQATVxPPRRS
HLSTGSRATGPRSTSSRPASASADxRPFSDEDTGKTSKxCRYHKSYTHSTEECFYLNKIMEGIIQQGTPPPNQWKRRSTS
RGDEGLSADGENSRGKQPASEEDEAQWRQKPVINMIVGGPEGGDFANTRKAWARQLYVGTVYGREESSKKICREPIVFTD
KDLPDRGNPHRDALVIAMDINGVVVRRILVDTGSSVNVLYLETFTKMGLTREQLRPVNTPLAGFTRDSVEAEGSITLPVE
IGSYPDVQKLSMKFIVVDLACSHNAILGRPGLEDLGALISIEHLCLKFRTPNGIGTVRCDRKVARDCYLQACRGMGKRGM
QVHEITKRPPKKTVIPRPEPAVELEEIEIDPAQPSRRVRIGVGLSEKLKGEIMKVLQEHRLVFHLGPRRYARRGSIDRIA
STRRRPRAPAGRAKETVLGQRPEGVC
>Rover_DM_gag#LTR/Gypsy 915-2168 [Drosophila melanogaster]
MATASPIILSDSNMSQVERQINAVEIFNGDPNTLHTFITRIDFILALYQTTDERQKLIIYGHIERNISGDVIRTLGTNNF
TSWIELRTRLILYYKPQAPSHQLLEDFRNIQYKGNIRQFLEEAEKRRQVLMSKLELENNSAETALFTRLIQDSIENLILK
LPNHIHLRIVNCQIPDLRSLINILQEKGLYEPQTLNKDNFKPAPNSNRTPNNLPNRQVNGQNKPITPFQPYHNNVFQPYY
PPYPYAPIHTPRPNQTPFPQYQPRPTYPQPNIPRPNPVFNRQNIFDQNRFGPNQTYTPNNFPPTGNTQTNNPVKRQRPSD
SGQTKMSIEELRYQEMVSNQPEYPYHYYYPYYPDNFQPQPYPYQMSYIPDPTQIPFEQDHDTSDKTQQEQTAPNDDESDN
TKEAENFRLVAPDQTNI
>TIRANT_pol#LTR/Gypsy 2537-6088 gi|60593115|gb|AAX28844.1| reverse transcriptase [Drosophila fruit fly genus]
FEFSANGLGKPTGYISPATHNPSLPFIKIKLSQTNPLKFLIDTGSTHSFIDPKYVDPRNCVTLDTPITLKTALNSFKIYQ
NVSIPFPPEFQITGKMTLLPFKFHSYFDGLIGMDLLSYLKTEIDLLNLNLKTPSTIIPLWTHSNSTSNVFNISGHTKTIL
PLPVETKQGDFYIDSITINDDLIISDGIYNAQNNIANFVITNYSERDQLLYLESPIKGMPYSTANNVELFSITSDTPQPQ
NSAASLQALGVDHLSSEEKQSLLSLCKSYLDIFYNEDKSLTFTNKITHTIKTTDDTPIHTKSYRYPYIHKEEVKKQIEAM
LNQDIIKSSYSPWSAPVWVVPKKITPTGEQKWRLVIDYRKLNEKTISDRYPIPNIADILDRLGKAKYFSTLDLASGFHQI
EMNPDDTPKTAFTVEGGHYEFIRMPFGLKNAPATFQRVMDNIFGDLIGTICLVYLDDIIIFSTSLQEHFIHLKTIFGRLR
SANFKVQLTKSYFLRRETEFLGHIVSQEGVRPNPNKIEAIKNFPCPHSKKSIKSFLGLLGYYRKFIRDFARLTQPMTQKL
RGNNKSIIIDDEFKKAFEYCKTLLSNDPILQYPDFTKPFTLTTDASNFAIGAVLSQGPVHSDRPVCFASRTLSAAETNYS
TIEKEMLAIIWAVQYFRPYLFGRRFTIITDHKPLTWLMNFKQPNSKIVRWRLQLQEYDFEVVYKKGSQNVIADALSRPEA
SVNHNEALSIPQNVCPISEKPLNDFNIQLLFKITPDTNNATLTPFKHKLRREFCKPNFQYDDVVCILRQSLKPNKTCAVF
APDHIFQMVEQAYQTYFSAHSQFKLIRCLIFLPEITDSTEIEKIITDYHYNSNHRGIDETYLHIKRQQFFPHMKERITQL
IRKCETCLKLKYDRQPQKITYQISELPSKPLDILHIDIYTINKNYNLTIIDKFSKFAAAYPITNRNCINVVKALKHFISQ
FGIPKKLIYDQGAEFASDMFNKFCTQFNIDLHVTSFQQSSSNSPVERLHSTLTEIYRIILDVRKQQKLSSEHDEIMSETL
ITYNNAIHSATKHTPFELFNGRTHIFNQTIQFNNEHDYLTKLNEFREKLYPLITDKLSNDVVRRTLKLNETRTDPVDLQP
DTLVLRKENRRNKITPRFSIHKVKHDKGHTLITARNQKLHKSKIRKTVLKKDKSNNVPNTDNN
>ZEON1_ZM_p2#LTR/Gypsy #ReverseORF 5476-4424 via tfasty with RETROSOR1_SB, 2 frameshifts and 3 stopcodons. [Zea mays]
FGKSSIKENHLVNMRGRYFWDLSVVRADEGEKTCPTPEENEVVVFRSFLKAGLRFPLSSFVVEVLKIFEIYLHQLTPEAI
IRMNIFVWAVRSQGLEPNAKSFCNIHELLYETKPWGKExYHNNFGCYSFGSRSGSSCPVPTFRKRWPGDWMTEWFYVKND
LKSREDIKKIIMRPIWQRFGLRRPKVEMNEAAEEWQRAFDVVCSFIGTRDLVQEHIAFRVWPLVEKWEMPQETIKETDEG
GLVRLKYTFKFGDKFVEPDDDWLKSIETVSDELLGVYSKAEDTALSAALGGRxKxRLIRVFDTIGFVYPDYIIECGDKKR
KNTSSAKETTSAAPSEPAPKRKRVKVLTHRP
>ZDE_ZD#LTR/Gypsy 862-1368 [Zea diploperennis]
LSTLHRGLHRHPTLVRLPPLAPQRGLQDRRQVGHYANACPVGNSSAPSQNKQQTPGKGFSIARVNQVSTEATADGADIAI
GMFYINAIPAALLFDSGATHSFIFARFATINELPLQNMKTPMVVITPKGHVEANYMTQRLTLTIMGREFWSTLIVLEESN
IDLILGMS
>Gypsy-30_DR_pol#LTR/Gypsy-Cigr 1388-5476 ORF(pol-like) . [Danio rerio]
QPTPIQTTGKLPLADVEGQTSASTSLPHTDFTVSKNYEHIQSPNKVSANILAIVEGVEVSALVDTGSTISIVGEDFRNSH
PMLRKRPIKTSMVLARSVTGQCLDTLGVLVLGMRLGTELLQHDFQVVRGAHHPIILGWDFLQKHHALIDVTNEKMSLWNF
ELPLLSTGHEAAACCNVSVLASTKLPPWSETVITACVAGATAVSPVPTAYTGVLEPNTASNVAVAHTLSEVRNGLTTVRV
LNTTEEDIEIHAGQHLGEFQFLSALDSTVLEGECCNILSDPSAATPSVSIDNSDLSASQVESLTELLTKYCDIFSKDSDD
RGRTGMIKHRIRTGEALPIKQRPYRVTPEQRQEIQQQVTKLLKADVIEESYSPWAAPVVLVRKRDGTWRFCLDYRKLNSV
TVKDSHPLPRVDDALDALSGSAWFSTIDLQHGYWQVELAKEDREKTAFTTGDGLYHFKVMPMGLTNAPATFQRLMEMVLR
GLPWKTCLVYLDDVLIFSKTFNDHLQQLEEVFTRFKSCGLKLNPSKCSLAKREVQFLGHIVSKDGIKPDPRNVQSVQDWP
VPRSPTEVRSFLGLCSYYRKFIKDFAQHAVPLHKLTEKNARFSWTAECNEAFTYLKHALSHPPIVSFPDFHQPFLLYTDA
SASAIGAVLAQEKGTQETVIAYASHVLTKAERKWSTYDRELWAIVWAVRHFRHYLYKQHFFIITDHKPLMGLRKIPIDSD
RTGRRARWALELDPFEWTVIHRKGLKHANADALSRRQASDSAMEIPASSSGEANVGSPVSKSDSGYLSAAQGSKVLGPSV
SITHVSPTLSACVNQEMERTPSLMLQLATSESSFIEHQKQDPVLKEVISWKLKGLRPPYRKISKRSQEERIFWKEFTRLT
LHNGLLCREIXNSSTKSVTCQVIVPQTLRKQVLQSLHGNPIAGHLSAEKVVKQAQQLCFWPFMSRDIYEWCKKCVPCDAR
RTPIPRQKAPMKTITATAPFQKVAADILELPVTSRGNRYVLVVQDYFSKYVNLYAISDQRATTVAKCLFENFVCEHGIPE
VLHTDQGRQFESELIQNLCQLVGIQKTRTSPYHPQCDGMVERFNRTLIDQLTKILQQQQGEWDDYLRQVALAYNTSPHSS
TGFTPFFLTHGREARLPANLLLPKSSPQSPTKSVPEYAVDMISKLEDVFTAVAQNSEHAYHQQKRHYDRNLNFTPYQEGD
LVWLHDPTTVRQKLTPHWKGPFEIVECLESERDVGVTYKIHYLLDDPEKCQIVHYNRLRPYCAPVPQKPQQTTLSASYPS
PSLTALSGALPFKPPQYARCTPNLTSEDQILPQAPLPLQVPSSSVDPASVTSTPNQSSSSAPMTCLGRRPVKLPGYLRDY
LLT
>BIV_pol#LTR/Lenti gi|9626221|ref|NP_040563.1| reverse transcriptase [Bovine immunodeficiency virus]
TAKMLPLWQTWPPSKKLQVKKREVLLCPLWAEEPTTEQFSPEQHEFCDPICTPSYIRLDKQPFIKVFIGGRWVKGLVDTG
ADEVVLKNIHWDRIKGYPGTPIKQIGVNGVNVAKRKTHVEWRFKDKTGIIDVLFSDTPVNLFGRSLLRSIVTCFTLLVHT
EKIEPLPVKVRGPGPKVPQWPLTKEKYQALKEIVKDLLAEGKISEAAWDNPYNTPVFVIKKKGTGRWRMLMDFRELNKIT
VKGQEFSTGLPYPPGIKECEHLTAIDIKDAYFTIPLHEDFRPFTAFSVVPVNREGPIERFQWNVLPQGWVCSPAIYQTTT
QKIIENIKKSHPDVMLYQYMDDLLIGSNRDDHKQIVQEIRDKLGSYGFKTPDEKVQEERVKWIGFELTPKKWRFQPRQLK
IKNPLTVNELQQLVGNCVWVQPEVKIPLYPLTDLLRDKTNLQEKIQLTPEAIKCVEEFNLKLKDPEWKDRIREGAELVIK
IQMVPRGIVFDLLQDGNPIWGGVKGLNYDHSNKIKKILRTMNELNRTVVIMTGREASFLLPGSSEDWEAALQKEESLTQI
FPVKFYRHSCRWTSICGPVRENLTTYYTDGGKKGKTAAAVYWCEGRTKSKVFPGTNQQAELKAICMALLDGPPKMNIITD
SRYAYEGMREEPETWAREGIWLEIAKILPFKQYVGVGWVPAHKGIGGNTEADEGVKKALEQMAPCSPPEAILLKPGEKQN
LETGIYMQGLRPQSFLPRADLPVAITGTMVDSELQLQLLNIGTEHIRIQKDEVFMTCFLENIPSATEDHERWHTSPDILV
RQFHLPKRIAKEIVARCQECKRTTTSPVRGTNPRGRFLWQMDNTHWNKTIIWVAVETNSGLVEAQVIPEETALQVALCIL
QLIQRYTVLHLHSDNGPCFTAHRIENLCKYLGITKTTGIPYNPQSQGVVERAHRDLKDRLAAYQGDCETVEAALSLALVS
LNKKRGGIGGHTPYEIYLESEHTKYQDQLEQQFSKQKIEKWCYVRNRRKEWKGPYKVLWDGDGAAVIEEEGKTALYPHRH
MRFIPPPDSDIQDGSS
>BIV_env#LTR/Lenti gi|9626224|ref|NP_040566.1| envelope polyprotein [Bovine immunodeficiency virus]
MDQDLDGAERGERGGGSEELLQEEINEGRLTAREALQTWINNGEIHPWVLAGMLSMGVGMLLGVYCQLPDTLIWILMFQL
CLYWGLGETSRELDKDSWQWVRSVFIIAILGTLTMAGTALADDDQSTLIPNITKIPTKDTEPGCTYPWILILLILAFILG
ILGIILVLRRSNSEDILAARDTIDWWLSANQEIPPKFAFPIILISSPLAGIIGYYVMERHLEIFKKGCQICGSLSSMWGM
LLEEIGRWLARREWNVSRVMVILLISFSWGMYVNRVNASGSHVAMVTSPPGYRIVNDTSQAPWYCFSSAPIPTCSSSQWG
DKYFEEKINETLVKQVYEQAAKHSRATWIEPDLLEEAVYELALLSANDSRQVVVENGTDVCSSQNSSTNKGHPMTLLKLR
GQVSETWIGNSSLQFCVQWPYVLVGLNNSDSNISFNSGDWIATNCMHPITLNKSAQDLGKNFPRLTFLDGQLSQLKNTLC
GHNTNCLKFGNKSFSTNSLILCQDNPIGNDTFYSLSHSFSKQASARWILVKVPSYGFVVVNDTDTPPSLRIRKPRAVGLA
IFLLVLAIMAITSSLVAATTLVNQHTTAKVVERVVQNVSYIAQTQDQFTHLFRNINNRLNVLHHRVSYLEYVEEIRQKQV
FFGCKPHGRYCHFDFGPEEVGWNNSWNSKTWNDLQDEYDKIEEKILKIRVDWLNSSLSDTQDTFGLETSIFDHLVQLFDW
TSWKDWIKIIIVIIVLWLLIKILLGMLRSCAKVSQNYQHLPAEEEDGDTEPESSPARGDPASGSLYENWLNKIGESKNDA
YRVWTEEYNSLRILFATCRWDLLTPQLLQLPFFLLTLLLKLLWDIFRHAPILNLKGWTVGQGGTSGQQQPPDFPYVNWTG
SREQNNPEGGLDSGAWYEGLRGSQ
>XP_003389166_pol#LTR/Gypsy gi|340381314|ref|XP_003389166.1| PREDICTED: hypothetical protein LOC100636756 [Amphimedon queenslandica]
MPRGRKPKTRATDETVDDEGSQGSISVRDLLDVMEKERKRQSEEQKQRAKEHQELMKVLVDIMKQKRCGRDEGDSSSDES
EDEAGEGRVVGGREPVLTKFSEKDTDIEHFLTGFERVATAYRWPDECWVLKLVPLLTGKALAAYANMDSEAAKNYQSVKK
AILRRFDINEETYRQRFRSTKKKEGQSYVEVGIQLMDLFRKWTASAKDSVAELTELVVLEQLLNTMPTELQVWIREKKLK
TVEEAATQADDYLLARQGMRKEDKRCHGCREKGHMYRDCPKKEQPKQGDRPAGEGQKRQDQRKCYRCGGVGHIAAKCTSE
KRNTGYYLNARNQMKGKTWKKPAEEIIFWGMIQEKPVEMLMDTGCSHTLVKREFIPEHCILEGETVALQCAHGDVTKYPI
AEVDMVIEGVKKRVRVGVSETLPRSVLAGTDVLSLFGDQTVEDCMVMTRSKQRKEIQEEIELQKKQEESGAIPKPIEEEP
ETSGLESIDDEMFAKPGRDRKTRSQKRKEKQIWQSDSCIKKRQDMPSGQEELKKLQSEDETLEKIRKLAEGTEEDQQGAR
FEKQKGLLYRVIRRREGIERKQLVLPRECRKEVLRIAHTIPMGGHLGQRKTTARISERFFWPGMIQEIKNYCRTCPECQR
TAGRRYTPRAQLVNLPIIETPFKRIAMDIVGPLEKSNKGNKYILVVCDYATRYPDAFPLKSIDAESVAEKLIELMSRVGV
PEEILTDQGSNFTSRLLTEIYKMLTLKGITTTPYHPQTDGLVERFNGTLKNMLRRCTSQNPRDWDTLLPYILFAYREVPQ
ESTGFSPFELLYGRSVRGPLDILKESWESRENCPENVVTYVTEMRRRLEEMTGIVGENMKKSQVKQKRWYDRKARHREFK
TGDKVLVLLPSTTHKLTAEWKGPYVVKRKVGDVDYELEMNGKQKKYKIFHVNMLRQWYDRTDTSFLMGEVNKEESEIVPV
IEAPDFETTELIVGETLDERQREDLTQLLAQYKDVITSDLGRTTLAEHCIEVEGASPYRQSPYRIPLGKQEEVRKEIQRM
EDMGVIRPTTSDWASPMVIVPKKDGSIRLCVDYRKLNNVSKFDAYPIPRVDEMIDRMGSGKFITTLDLNKGYWQIPVEKS
SQEKTAFITPMGLYEFVTMPFGLRGAPATFQRLMDRVLRGTEQFAGAYIDDVAIHSETWEGHLQHLREVLEKLQGAGLTA
NPSKCKFGMTEVLYLGHKIGGGRVKPEESKVKAVKQYPVPKTKTEVRSFLGLVGYYRKFIPQFSSIAAPLSDLTKKNVKT
FVWTEECQASFQLLKKMLCGSPVLRTPDIRKEMILQTDASNRGLGAVLSQIGEDGEEHPIVYISRKLLPREEKYAVVEKE
CLAVVWAIQTLKVYLYGQHFRIQTDHHALYWLDRMKSKNERLSRWSLYLQEWNFRVEYRKGTENGNADGLSRGPVVEQPS
CSLEVEGGVMN
>TreLTRRT2_gag#LTR/Gypsy 120-3752 [Trifolium repens]
MHLRSGKSLPVFSNIPKRPRSRMVRPPNNPNPNNXNNNNNNGXETNPVXNXTGPPNQPVTGNPGANPTGGSTNPALNFTT
SESIPXNNPNXGGTNPVISSGTIGASASGSTMSATTSSMAGGFVPPNXXGAMMTQMNVSSXPTNVSXXXGYTDGSQXGGT
PSRPPWLPRNPQXGMPTTTMASLYNWPSXESSPSSSAMGNRGNSLNLTNNSMNVLRQQMDESNHDMVNALTQQIGTIFNP
VLQTANDNYLLLANQMGRMADFFGAPDAPNNQRIPRVNPEIQTGVQAQPVRIEREQQEPEVVLVNRNQDADNVLRQVRQE
NVAGQNNLANLVENILAQNGLNTGLHRPNFVSPLSEXVLQAELPRGWKIPKFTKFAGDTNESTVEHIARYLAEAGNLANN
EDLKMKFFPNSLTKNAFTWFTTLPPHSIHTWTQLERLFHEQFYMGQSRISLKELASMKRKTSEAIDDYLNRFRLLKARCF
TQVPEHELVEMAAGGLDYSIRKKLDTQHLRDMAQLADRVRQVERLRAEKVRNSKFHKKEKVAYIETYESENEFDDGQDYI
ENNEVNVAELKPGPPYTCKMLKPSNGNNPVEPKNDRFVSKTYTFDITKCDEIFDLLVADGQIIVPKGLKLPPLDQRKKRG
FCKYHNFLGHRTSQCVLFRDLVQKALQEGRLKFGEKPKSKQQVDEDPLQIADAAYTEPFECLMLEALNLTEGGQLISIPE
EEYENKVEEVYPQAGETLLDFLQRCKENDGEATLCPHCSAMFDKKAAAGLNKFLPHSQNRNNWPNQKPTYSNILNSQQAP
VHQRLGPQKSFVPSNRTPVNQWVHGRSMDYGQRNMERGNSSNSNPKKDPESRKYDYRNNYKGKNPMTRSQWRRYQRQKKV
AAQQSPLTTDGNGRRPLELAKKPMKERLGESKIESSVADNVEDDHMEADDFLDSEPDLDIIVNVVSILPREFDVCSEVTD
DEEESGMQMALHRPVCYYVTSNGALEDQMATFERPDEGMKSHLKPLFIQXKVNNVGINKVLIDGGAAVNLMPEFLLRKIG
KSLVDLHPHNIVLSNYEGETGFSLGAIQLEVVVGSTVRPTLFLVVASKANYNLLLGREWIHGVGAVPSTLHQRLIIWRED
GIVENIEADQSYFKTEVHHLTKHSFDKKLATISPCTEKDFAYRLARNGHHAIKLDPTHGFLWEREDGNSEDGEYESHKCP
TGWDVKENYYV
>TOM_env#LTR/Gypsy 4669-6090 [Drosophila fruit fly genus]
GPHSTGIWRTVMILSLLLTMSYAQQIQIGGIDTNHGYLLFSSKPIQRPSAFEHHCLTVNLTEINTITTYFGNKIQNSTDT
PRIKFLYNKLIKELNGITLHKERRQKRGLFNFVGSAFKFLFGTLDDNDRIQFEEKLNSEAENSIKIHEFNEVMQFVNDGL
QRIKKYENNRNSIDTLVYELMQFIEYIEDLEMGMQLSRLGLFNPKLLNYDKLQNVNSENILLTKTSTWINYKNNEILIIS
HIPINHVLINTIKIIPYPDRNGYQLEYSGSDSYFENDNKIYNQDNKEVNSECIANIIKRRNPTCNFVPALTKEIIKYIEP
NVIITWNLTQTTLTQNCQNSNSNIQIKGNKIIRITQCKVKIENIILSENYLHPEIDLTPLYPPLNITKIKILKHNDIIKM
ISQNNITLYTIIIPAILALVAMILILKYINFNPFIFLYIKLRKQTERNQPQLQENELGENPLPTLYPSMPAQV
>TSE3_gag#LTR/Gypsy 101-925 [Kazachstania exigua]
MSKESKFDSKALKEFKDSMPIILGKDNSTPPDNYDAWEAMVQRRLEQYGYDDEIATECMLMVMKGQCAIWFHSYLTTYRN
IHGKSPSTQEACAACREQYGNESFDEENIQNLLDLQINFSNREPGITKFLQYRHLLERMNSHELILHIYIHTLPPAIRNY
IFSQKAKGLDEAMALTRRKMKELEMDKTVSYRQSSERIKSIPRKFLNQSLNRRPVSVVTVVSLGIQKTSADGRKLVYQTN
QNLPQRYLRINYIVQKISRAIIFKIFLYFYYTCL
>XP_001549167_pol#LTR/Gypsy gi|154297481|ref|XP_001549167.1| hypothetical protein BC1G_12337 [Botryotinia fuckeliana B05.10]
MYKNKATKVRPSNQPCNITGEPPGGRDDWFERDQLRNPYQEPSGRWKEFLIPRFNKEPEGYRLTPERTKAIDCGDLLTDL
ERDMLMACLLNREGALAFDWTHAGRVQEDVAPPQRIRTVPHEAWQTPGFPVPKALVEVVSTMLRDRIKQGVFEPCDGPYR
NPWFLVKKKTPGAYRIINAVVELNRHTIRDANLPPDADAFAENFAGCTVASLIDFFSGYDQIPLALESRDLTAFQTPLGL
LRYTTLPQGATNSVAQFCRIIMKILGDLTPSVAISFLDDIGIKGPKTVYDNKEIVPGVRKFVLEHIQAIDKTLERLERAG
CAVGAKSKWCYDGMEVVGYVVGSEGRKPVEAKIKKILDWPEPKSATEVRMFLGVCVYYRIWVEKFAQKAEPLYRLLKKDV
EFSWTIEQEQAMKSLKENLIKPPTLMPLDYGDTMIVGQIVLGVDASIDGWGAHLGQESGGKRTVARFESGLWNDAEKNYD
ATKRECRGVLKALRKCRFDLYGIHFVLETDAKVLVAQLNRAATDLPGALVTRWIAWIRLFDFEVRHVKGTAHTAADGLSR
RPATLSEVSEEDKEEDIDEWIADQLNNVEDVSTIHNFANFSRSYELDKGYNSESRKIAQYLTSLQRPEGMTSQEFSKFKK
RALGFSVREGCLYRNGTRDTPHRKVIDEQQQRTSLIGNLHEAYGHKGVESTFDKVHKLYYWNGMYEDVKRFVKSCPNCQK
RQPNVQEEPLHPTWVSTCWQKCGLDIMYMPPDNGYKYLVSLRDDLSGWIEAKPLRNATSQAVAAFIWNVVCRHSVFGKVS
VDGGPENKAHVEYFLRKYGIKRVQISAYNSKANGQIERGHRPIADGLAKVMDGKSGWLRHLDAMLFADRVTTHRPTNLTP
FYVIYGRHPVLPIETQYSTWRVLDWEKVTSREDLLALRLRQLEMHDLDMEEAVMRKKRYRLDGKARFDKDNNVIDKKITA
GDIVLQFDPQSKIDMSRERKLGYRWLGPYRVNKVLPNKSTYILEEMDGTPIDGTYSGARLKKFVKREGEYIPVGGEEEDT
GDITEDELEDPLEALLNPRRSERIAQRFTTTEDMIDHIQENQDVTPPTNTNTRIVVEIPAISPSTRRAFPTVLE
>TSE3_pol#LTR/Gypsy 861-4418 [Kazachstania exigua]
FKKLVEPLFSKFFYISTIPVYNGKTNPTNFYHSYLHLHQLAQDNELLTMTIQISKRNNKSTLALADTGASHNFIEQRFIQ
GMGLVKQRLPEQSVVKGALNTSGLIQHYVRLKFKHNKDLYEEIFLIIDSPLPQPVVFGIGFFKQHPEILSRLISPPTSSS
KPITMVGRRQILADLKNPDNQVHLCWLRKKDQENSETQSHKILQRFDDVVVDEIPQGNSNKPLATPTVQHHIDLVEGAAP
VAKRAYRLSASDRDELDKQLSELIASGNVIPSESPYAAPVIFVQKKDGTKRLCVDYRGLNDITIKSKFPLPLIEDVLDQL
SGATIFSKLDLISGYHQVAIADEDQYKTAFTTHRGQYSWRVMPFGLTNAPATFQRLMNYVLRDYINKICVVYLDDILIYS
KNEKEHSEHVSTIINVLRKHQLYAKKSKCEFYVPKIQFLGHELSAKGITPDKEKILAIKDWPTPKTYKDAQSFIGLAGYY
RRFIKDFSYIAKPLHQLAAQKIKWTDECKESLDKLKRQLSTAPIIIPFDRTKQIVLTTDASSTAIGAVLELYGKGTLKSE
LVGVVAYLSHLLRDNELNWPIRDKELYAVIFAFKKWRHYLAGTHIIIKTDHHSLQYFKTSVLDSNLRLARWRDILEEFDY
EIQYIKGSTNHADALSRPPMLNSLVASKVELPEEDLRELETAYSTDPFFSKIIKHLKDPALEPPIEVRTPLQNHKLEGNL
LYYTKEENMPKRLCIPQAHNVKLFYTYTMMPLLLAIQDNIVHFKALLENYYWPGMENDIKRYVSTCRACQQNKHPVLLSP
GTFHPLPSGTHRWSHINIDFLGGLVLSQGHDCIMVVIDRATKMAHFIPVTKGADSETVIDLFIDSVLKLHGFPVEILSDQ
DKLFTSKLWQRSMQRFKIATKFTSTYNPSTDGQVERMNRTIMEMLRHYLTDNPSAWVMLLPVVEFAYNNTYQVSIQTTPF
FANYGYHPRLPGFYHLITSGGQSEKEARGTELGDLDDRIIQQNNIFLIIQERIAAAQQKQALQYNKKHRHAEFEVGDKVL
VHQQAYWPGYHKGLKLHHIWYGPFPVTAADGANLTLDLPRQRTRRNTTFHMKYIKLYDERTNATPTAPPVTPGQIRQRTN
EITKIVSLDTQLNKIEAQWQHCEPSDISLVSPQDLQRTPYLERLLDHYDMSEADKIGTNRFRKHR
>Monkey_MA#LTR/Gypsy 142-4065 via tfasty with GYLES1, 8 stopcodons [Musa acuminata]
MLDIQDMSEKDKLFSFLDGLKPWAQQELNRRNVTEVVGAIAAAERLTDFVSSEDPTRRKQSSSNLPPKHSRGKELGGKQK
KKSSHKGPNPKGKAAKPGGCFLCGGPHMVRECPQKxALNALTASIHPPQSDKGKAIALSSSSSESSSDDEESQGPRMGAM
RLLNAMQGQVGENMKTKAQKAGSSELMYVDIKLNGQTIRAMVDTGATHNFIADREAQRLGLTLEKSPSRMKAVNSEARRI
SGLAKGVPIKIGTWGGNTNMMAVPLDDFQVILGMEFMHAAKLVPMPFLNSLCLMGGDDPCVVAVSRRGTKEPQHISALQL
KKGMRKGELTFVAAMKLEPLNEVAIQEPTVVANVLKEFKDVMPPELPKNLPPRRGVDHSIELEPRVKPPARPPYRMPPPE
LAELRKQLGELLSGGLIRSSKAPFGAPVLFQKKQDGSLRLCVDYRALNKVTVKNKYPIPLIADLFDQLGKAKYFSKLDLR
SGYWQVCIAEGDEAKITCVTRYGAFEFLVMPFGLTNAPATFCTLMNQLFKEYLDKFVVVYLDDIVVYSQTLEEHVKHLWM
IFKVLRENTLFVKREKCYFAQTEILFLGHRIGDGSIWMDKSKVQVVAEWRTPKKVPELRSFLGFVNYYRRFIAGYSKRAT
PLTELLKKEQTWKWSDKCEIAFQDLKAAVLEEPVLKLPNYGEPFEVHIDASDFAIGGVLMQEGHPVAYESRKLNETERRY
PVHEKEMTAVIHCLRVWRHYLLGSRFVLRTDNIALSYFQTQKKLSPKQARWxDFLVEFDMAMEYKPGKANVVADALSRKV
ESVNVVQLEGRGQASxLHSNFLSRIRDGLYSDPQAVILMQLIKEGKARRFWVQEGLVYTKGNRVYVPRVDNLRREFLKEC
HDSLWAGHPGIHRTLALVERAFYWPKMGINVEEYVRTCLTCQxDKVEQRKPVGLLEPLPVPERPWERISLDFISSLPPVG
GLGSILVVVDRFSKYATFIAAPLHCSAEEAARLMMKDVVKYWGVPHNIISDQDARFLGRFWTELFxLLGSKLYFSTSLHP
QMDGxTERINSLLEQYLRHYVSANQRNWVKLLDIAQFSYNLQRSSTSNKSPFEIITGQQPSTPHTMAIGYTGSSPSAYHF
AKEWHRNADIARAYLEKATKRMKKxANLGRRPQEFKVGDLVLVKLxSASLQFFRNRVHKGLVRKYEGPFPIISRVGNVSY
KLQLPAWFKIHNVLHASNLKAYHSDLQDASRSDPTRLPPITASYEKRVETILADRKIKLPNGAEQTEYLVKWRKLLRTEA
SWEPEDALRHEEEVINNYQQASTRASTV
>MamGyp_pol#LTR/Gypsy 1345-5061 [Mammalia] 
MGIHLNLLSCGGPGHMQRDCDXEEEPGPHSETGKVAXXQRXNFLRQPPRRXMPGCPQAXISPRTGXXPMEVAAKIEGIWX
SVVLDSGSQVTXXFKSFYDKHLSHLPLQKLXGLGLCGLSTEAYPYLGYVIVRLEFPEGVVGVXEEVDTAAVVCPDPGGVQ
GVVALXGTNSNLFKVLAQYCXQXAGTEXLDVLPIHVLCAEAYKKMEAKQXXMPPASXPGVVPTGSPKLNPESFDFGDSPV
PEEWKERLRRKLQARSXVFSLHEWDVGCVQGEQHKIELXDPXPFRERSRRIALSEINDLRXHIKELLINGXXSESHSPYA
FPIVVVRKKSGKXWMCVDYRTLNRXTKIDQYTVPRVQDALDCLLGSQWFSVLDLRSGYYQIPMAXEDKEKTAFICPVGFY
QFERMPQGISGAPATFQRLMEKVIGDMNYLEVLVYLDDIIVFGRTLEEHEQRLLKVLDRLEEAGLKLSLDKCQFCRTSVK
YVGHIVSQQGVSTDPEKXSAITNWPRPTNYRELKTFLGFSGYYRRFVKNYSRIAKPLNDLTRGYQVRAGAPTRKGQPTGQ
EEARVLHPFEPFGERXGKACEQAFRTLVDXLVXAPXLAFADPTKPFIXHTDASFEGLGAVLYQXNXGKXKPIAFASXSLS
DSETRYPIHKLEFLALKWAITDKFXEYVYGVPFQVWTDNNPLTYVLTSAKLDATGQRWVAALADYNFSIXYRSGLSNKDA
DALFRWPHPQXAETIPSEGVRAIWGLQRGXAXPEGRYGXKLGAXSKTVPMVAVNYVALGKSSLPQXGVEDWRKAQWADPE
LREVMKGKXRGLLAERIRAFSKGIRILLRXWQKXXLINGVLYxGKGXXVXRXMGIHLNLLSCGGPGHMQRDCDXEEEPGP
HSETGKVAXXQRXNFLRQPPRRXMPGCPQAXISPRTGXXPMEVAAKIEGIWXSVVLDSGSQVTXXFKSFYDKHLSHLPLQ
KLXGLGLCGLSTEAYPYLGYVIVRLEFPEGVVGVXEEVDTAAVVCPDPGGVQGVVALXGTNSNLFKVLAQYCXQXAGTEX
LDVLPIHVLCAEAYKKMEAKQXXMPPASXPGVVPTGSPKLNPESFDFGDSPVPEEWKERLRRKLQARSXVFSLHEWDVGC
VQGEQHKIELXDPXPFRERSRRIALSEINDLRXHIKELLINGXXSESHSPYAFPIVVVRKKSGKXWMCVDYRTLNRXTKI
DQYTVPRVQDALDCLLGSQWFSVLDLRSGYYQIPMAXEDKEKTAFICPVGFYQFERMPQGISGAPATFQRLMEKVIGDMN
YLEVLVYLDDIIVFGRTLEEHEQRLLKVLDRLEEAGLKLSLDKCQFCRTSVKYVGHIVSQQGVSTDPEKXSAITNWPRPT
NYRELKTFLGFSGYYRRFVKNYSRIAKPLNDLTRGYQVRAGAPTRKGQPTGQEEARVLHPFEPFGERXGKACEQAFRTLV
DXLVXAPXLAFADPTKPFIXHTDASFEGLGAVLYQXNXGKXKPIAFASXSLSDSETRYPIHKLEFLALKWAITDKFXEYV
YGVPFQVWTDNNPLTYVLTSAKLDATGQRWVAALADYNFSIXYRSGLSNKDADALFRWPHPQXAETIPSEGVRAIWGLQR
GXAXPEGRYGXKLGAXSKTVPMVAVNYVALGKSSLPQXGVEDWRKAQWADPELREVMKGKXRGLLAERIRAFSKGIRILL
RXWQKXXLINGVLY
>NOMAD_gag#LTR/Gypsy 1150-2403 [Drosophila fruit fly genus]
MEETLRALSESLNALTNVVTGIKEDIKKNNDRLAILEQERGNADPTVDQPQPLVRARTEYELREISVLPDCVKELQAFEG
RQEAYLSWINRAQSILTEYDLIKTRPLYRAIVLHIRQKIRGHADMALAAYGVQDDDWDDIKRVLALHYADKRDLRTLEHE
LGAMCQGSRPLDRFYMDVNGHLSLILNNLKARNHPREVVNALIETYRDKALDVFIRGVGRDCSKHLLVRSPKNLPEAYSF
CMGLQNVMSRNFTAQNYQPSGAPRFAGPYQHQARPPFRTPFSPGSGRFSQNSYRTQGPRQAIKMESNRSGQSYQSGYSGR
QEEGSGIKRMSEGNNPFQKAQRLYHMELAPPPLAPAASGDNQGRSHEGYYDDESQAVERSNNYPPQKNVEGVTDAPHNLE
TEGGANFMTNASPVYRT
>Ogre-MT3_gag#LTR/Gypsy 2595-6029 [Medicago truncatula]
MAAAEQTNNDLREEVSSLKEGMEKITAMMMDMMAAQAQASQAKIVQTVQGDVEVSQPAGSTATISTTQPLVNQFSSGDMT
NMYSSGFRPTGSLGSSIPPQYHMPPGYPWGMPLANNEGVRHNAPEMQFPFGHQQTPFYQSGQPFPQATMTYAGPLVHAGH
QEVEQVYHSNSVAGDDRVGNLEERFEAVHKELKTIRGKEMFSQNVNDLCLVPDVVIPHKFKMPIFEKYTGDTCPEMHLVT
YVRKMVAHKNNEPLLIHCFQDSLTGPAHTWYMNLKGITTFEELANAFIQQYKYNSYLAPNRKELQSMTQGDKESFKEYAQ
RFIQKSAQIRPPLDEREVSDLFYETLSPFYSEKMLGCASQKFTDMVDMGVRIEDWVRKGRVSKDGASSGGSSNGNRKFGN
GSSKKNAQEVGMVAHGGSQPIYPSYPYVANIPPPTLTPQNPNYQLQRPQAPHPYYPPLYQPQPYQPQPFYQQPYYPPPPQ
QQQPRPRAQQQHTRPQRNQFPPIPMTYEALLPSLLARGLVQTLPPPRVQNPLPPWFRADRNCAFHQGAPGHDIEHCYPLK
EAVQKLIHNKDLSFTDPNPAAPDHPLPPHGPTVNMVEDYQEGGLVTRSQDIKTPLVPLHVKMCEAAMFSHNHNSCEVCSV
DPRGCAQVQDDVQGLMDREELVVTREEKSVCVVIPVFKDSAKPIDGVTPVFKDSSKPAVAPLVICVPRPKPFFSQNAMPY
NYEPTSIENGKEISWSPSTSVSNIAENSQILRSGRILPAVVQAKKKAPVIESVPIPDPSKGKSMVQPGETDNDEILKLIK
KSDYKIVDQLLQTPSKISIMSLLTSSDAHRDALMKVLNQAYVDHDVTLGQFGSIVGNVTACNNLSFSDEDLPVEGKNHNM
ALHISVMCKTDSLSNVLIDTGSSLNVMAKTTFDKLTYSDGFIRPSCVSVRAFDGSRKTVWGEVDLPITVGPQEFKVTFQI
MDIQASYSCLLGRPWIHEAGAVTSTLHQKLKFVSRGKLVTVSGESAFLVSHLSSFSFIGGESPDGTSFQGLSVESGTTRG
ETCMASLKDAQRVIQEGKAEGWGKLVQLPENKRKEGLGFSSNNQVMFDPTRGTFHSAGFINAPPETNAILEDQSEEVAPD
FVTPGGNCCNWIAVDIPSAIPLSK
>NONAUT-3#LTR/Gypsy 161-2609  [Schistosoma mansoni]
MDPSKLELFLEQQMKLIQMLTETKITTNNQPSSSNPTTTAPSVDGIASSISEFHYDPESNVTFDMWFRRYEDLFKFDFAN
QDDAWKVRLLLRKLGPSELDKYCNLILPLNPRDRSFSDTVQSLSQQFGDNSSLFNTRYRCLKLTMNEDTDFLTHVGIVNR
ECERFWLKSLTEDRFKALILICSLQSQKFGDIRTRLLSRLDQDPKLTLNDIANEYQRLVNLQHDTTMVQRGVSDRREVHV
VQQQTKPVKPAPAIPSSSHSNSVQQTKTNPPAPCWHCGAWHYVRSCPYKQHRCRKCKAVGHKHGFCLKRKPNSSRSTRTP
VSRSCTNSLSLVATCQSSTPVEITFITVNINEQPFRLQIDTASDVTILSQKSWIKMGRPRMATTTQKPRTACGSYLRLLG
QLHCEVSFRDSTFTGVCYIAPGDLNLLGLDWFDQLHLADVPLNTVYQLVKQPHDPEAYPKELVTKFSTVFQPVLGRCSAM
KTTLRLKSGVKPVFRPKRPVPYAALQKVEEELNRLQREGVITPVSYSAWAAPIVVIKKANGAIRICADFSTGLNAALEQH
HYPLAVPADLFTMLNGGKFFAXLDLADAYLQVEVAEDQESYSLLLLIGGLFQYNRLPFGGQDRPIYFQQLMDTILSGIPG
VATYLDDILIVATTSEQLRERTTAVLQRVSDNGFRLRPEKCQLFLKSVKYLGFIFDAAGRRPDPENIRAIRTMPTPTNIS
TLRSFLGLVSYYSAFVPSMHDIRAPLNYLLNKDISWNWTKECENAFCKLKTIISSELLLTHYDPSLPIIVAADASAFGLG
AVISHQFPDATEKAIM
>IFG7#LTR/Gypsy 833-5241 via tfasty with ATGP3I, 4 frameshifts and 16 stopcodons. [Pinus radiata]
MDGLKKDVEAKMNGLKKGTKAKMDCLKKGVETKMNDVEAKMDDLKIDLKTSMEDLKIELKIDLTKFLQEMLTNGERVVKE
THDEKKRNVNHDFIDSNVGSKTHHIPKINMRKFDGKDPATWILQMEQFFDLNNVQNAQKVRIASLYLEPNQFVWYQWLCS
CKQIITWATFTEELTTHYEDTKSNSFFSQFISLKQKDSIMEHIEEFQKLNIRVKNILEEHRINVFIGTLKDNIQHDVRLW
EPDSLEKAFRLVRKMESKIMATGKHTTHIYKDGSVFAPSLPQPIMLTPQKLEEKRAKGLCYSCDSKYTKGHKCAEKKLFY
IDCEEEEEREQERSKEEDILxEQSLDKEEMNPTISCNALAGITTPQTIKIEGQIKKKKVIVLIDSGSTHNFIHCMVAKEL
NCFLYPTAECQVMVANGGTINCSGKCHNIKLSMExYVLTSPMLSIPMGGADVVLGVQWLxSLGTTTFNFQxLFMKFSAEG
KEVELRGIARKLGKIIKSNGMTKLLEKExRGVIAQLCSLDVSTLESYISLDLQKVLDNHSKVFKTPKDLPPIHDHDHAIH
LIPGSVPPNIAPxRYPYAQKSEIERMVTxMLEAGIIQPSQSSFSDPVVLVHKKDGSWCMCPDYRELNKLTIKDKFPIPVI
DELLDELHGSIYFTKLDLRSGYHQIRMKTEDIPKTTFRTHEGHYEFFVMPFGLTNTPSTFQGLMNSIFKPFLRKFVLVFF
DDILIYNKSWKDHVEHVDRVLQLLEEKKLYAKRSKCFFVVQEVEYLGHIVSHEGVKVYPNKIKAIKEWKIPTSIKHLRGF
LGLTGCYRKFAKNYGRIATPLTTLLKKDAFSWTPEATKAFEHLKEAMCQALVLATPDFMKTFIVECDASGNGIGAVLMQD
EIPIAFEGHPIRGKFLHKALYEKEMLAILHALKKWRPYLMGRHFNVKTDHDSLKYFLEQRLSSEExQKWVTKMLGYDFEI
IYKKGKKNVVANALSRKDEDVEALLCTMFIIQLDWINEAREEWKNDEEVWALIRNSQQDSSTFDTFSxKNDSLWYKDRLY
LCKNSQLKQKVLMEFHTSPLGGHSGFSKTYHKVKKEFFWDGLKSDIQKFVVECLVCQxNKVATIKTPGLLQPLSIPSQCW
EDVSMDFITGLPKSEGKSVIMVVVDRLTKYAHFCTLSHPFKASKVSTAFMxTIQKLHGNPKIIVCDRNLIFTGNFWTxLF
SCLGTLLAHSSSYHPQSDGKNEIVNKCFEGYLRCFVSDKxTQWVKWLPLAEWWYNTSFHIETKMTPFMTLYGYQQPSITS
YLRxISKVQAVEHHIEHQQQVLQLLKDNLVLAHNRMKQQADQHRIKRSFDVGDWVFLRLQPYKHMSLKKAKKDNKLSPKY
YGPYKVLQKIGTMAYKLELPTASRVHLVFHDSCLKKIIGDKLPVQTIFPELDEEGKIILEPEAATETRTRxLRNxSISEY
LIKWKNLSTEDSTWEDDNFIQKHPELLKR
>Gypsy-115_DR_pol#LTR/Gypsy 886-4306 via tfasty with SushiiDR1_pol, 1 frameshift. [Danio rerio]
WRKSADAAARTWCFTAVVLITSRFIEGKSQSPSVEKSLLTGGVSLNKSSLAATLLNVMLEWSSGNFSTQAIIDSGAEGNF
IDSALVKKLRLPVISLSQPISVHALNGSSLPSITHSTGPIRLITSGNHSEIIHFFLTEAPVTPVVLGHPWLVIHNPHINW
RQESVISWSESCHATCLLSACSSVSRSVFQEEHMDLSNVPKEYLDLKRVFSKSRAASLPPHRPYDCAIELLPGTSPPKGK
LYSLSVPEREAMEKYISDSLAAKIIRPSSSPAGAGFFFVKKKDGSLRPCIDYRGLNAITVKNTYPLPLMSSAFERLQGAS
FFTKLDLRNAYHLVRIREGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMLDQFIYVYLDDILIFSHSLQ
EHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGMRMDPEKVQAVVDWPTPDSRKALQRFLGFANFYRRFI
RNFSQLAAPLTALTSLKTPFRWSNAAQVAFDRLKSCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSSSDGKMHPC
AYFSHRLNNAEQNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIQSAKRLNSRQARWALFFGRFDFSISY
RPGSKNVKPDALSRIFDHSERASSPETIVPRRLFISAVTWEIESRVRMALEGVTPPPGCPPSRLFVPEELRSDVIRWGHS
SKLACHPGVSRTLYLIKQRFWWPVMARDIRNFVLACSVCAVSKTSNRPPAGLLQPLSVPSRPWSHIALDFVTGLPPSNGN
TVILTVVDRFSKATHFIPLPKLPSARETAAAVIDHVFRIHGLPTDVVSDRGPQFISKFWREFCHLMGATVSLSSGFHPQS
NGQTERANQDLERMLRCLVSQNPSSWSQQLSWVEYAHNSLPVSATGLSPFECSLGYQPPAFPSLESEVAVPSAHAFVQRC
RRTWNRARQTLLQVGLRTKAKADRHRSKPPVYVVGQKVWLSSKNIPLRTVCNKLAPKFIGPFSVTKIISPVAVRLKLPPA
YRRIHPVFHVSKLKPVFHTAINPPTPVPPPPRLVEGETVYSVKRILDSRRRGRGFQYLVDWEGYGPEERSWVPARDILDH
SLIDDYNRQVNSSGSAKRRS
>Gypsy-86_AA#LTR/Gypsy 1442-5272 via tfasty with Gypsy-8_DWil, 2 frameshifts and 1 stopcodon. Insertion at pos 3985 removed. [Aedes aegypti]
RLWVSEAETAFSEFSGTDFYPVRKWIADFDELSDSIGLSELRKFVVRKRKLTGLARMSLNTTNNVSNWRTLKDFLLKEFE
FSENCAVVHERLRNRKRNLGENVLEYFLQMREIGAKANVDILSIITYTINGINDNGPDKTILYGSKSIDEFREKLRIYQS
IKDSKYGRDGNFHPLNSEKRNFSGRPNGFNRNLTNQFKSPPRPINCYNCGRDGHISRECPKKFGNKNANICNSNTAVSKG
TFMMILVGTIPFEAFFDSGSDVSLLKEEWKNKLNLNMNQNDRKRLITLKGAIWTLGSVVLDIEIENTPLRVTFDILRDED
LPHDILLGRNILTFGDESVTADGAKFSPKEELFALRIRTDEVSDDFFDHIDDVYIRDKVKQMVEDYCPSKVENNRVKLKI
VLKNESPIQQLPRRLAPLEKQIVREQIDKWKEDGIIRPSTSEYSSPIVLAHKKDGTRRLCVDYRRLNKVIVRDHFPIPLI
EDIMDDLHSARVFSTLDLENGFFHVPVEENSIKYTSFVTPAGQYEFLKTPFGLCTSPTVFQRFINDIFRELIEKKIVIVY
IDDILIPARNEIEALERLKMVLKVAQSHGLIIKWKKxQFLKRKIQHLGYEIENGNIRPSRKKTIAVSKFPEPRSYKEIQQ
FLGLTGYFRKFIDGYSIIAKPLTDLLRKDAVFIFGPEQRTAMEKLKEALCNRPTLKLYSPNAITELHTDASRVGYGSILL
QKSAGENVFHPVYYYSRKTTSAEANYPSYELEVLAVISALKKFRVYLLGIPFTIVTDCAAFKMTMVKKDISPRIAGWALL
LEEYQYTLEHRPGTRLKHVDALSRNPVVMLLQSNIIDQIKVCQQRVQYXDERLAAIMKVLNTEPFGDYFVDHGILYKNFG
GGKLLVIPNSMHNFIIRNVHEQGHFGVKKTMHELLTREYWIENLSTKLDRFVKSCVPCILACRKAGKREGYLYPIPKDGT
PLSTYQIDHLGPLTASNKLYRYIFTVIDAFSKFVWIYPVKSTTADEVLKKLEVQRCVFGNPKRIISDRGAAFTSTVFQNY
CENEGIEHLQITTGVPRGNGQVERIHGVIVPALAKLAVDNPENWYRHVGKLQEFLNNTLQRSIARTPFELLFGTKMRTTQ
DLRLAEIIEQEWIRIFEESREEIREMARANIENCQRKMKQQFDRNRKEAEDYEVGDLVAISRTQFGTHLKIARKFLGPYR
VIKKKRNDRYDVEKVGNEEGPKRTSTCAEFMKRFIPGEDEEEETYDNMEQPDIGRSNQEDTNDQITPSGPDGGQDDR
>Gypsy-118_GM_gag#LTR/Gypsy 745-2610  [Glycine max]
MMGTNQNGKRFYQVKVKSLDVTSLKELGRLMGPLQRQAFRKVYGKILDLAAAEVFTEAVVSLAQYYDQPLRCFTFGDFQM
VPTIEEFEEILGCPLGGRKPYLFSGFLPSLSKIAAVVGDSAKELDRTKQTRNGVVGLPRKYLEGKARDMASQEKWGPFAD
ILALLIFGVVLFPNVDGLVDLAAIDAFLAYHHSKESPVVAILADLFDTFDRRCEKNSARIVCCLPALCVWLISHLFQQDT
RHPCPLQSYRSCAEKGRVDWDQHLAGIGGSAINWFPRWKEGKEGVLFSCGDYPNVPLIGTRGCINYNPALAIRQLGYPMR
GAPTEESLSPFLVRNLGAQSLKAIQRVHKAWRSPLRKDKELRGIRNGVIGGYHGWLRIHTRGLDWLSKLKVIDEEDFEAP
EEDEEVRALKLELGKARLAKEKFKSAATHIRKECTELQEENAATARALEQETKRARKEEYGREKFRGALWGSNNELKLRR
EERDRSRVHGMILKEELVACARSKRSLAQHLEATEQSMLAIIGQYKEELNQSVAHEQKLVEDFAQVYAEKEARGRVIDAL
HQEATMWMDRFALTLNGSQDLPRLLAKAKAMAEVCTAPEEIHGLINYCQHMIDLMAHIIRNR
>Gypsy-165_DR_pol#LTR/Gypsy 959-4354  [Danio rerio]
MPLLWYVWSFSIHLSRTIGKRGSPPSYRRTVMGKIRVPPANTVLALKAILSWESHQFPVQAMIDSGAAGNFIDLSLAKKL
KIPTHLLPHPQSVTALDGRPLEPGKVTEATQSLKLTIAKHQQEETFYLIDSPEYPVILGHPWLHRHNPHINWSTGSILDW
SPSCHFTCFTHSLSAPHPEPQDSVDLSQVPAVYHKFRAVFSKSRATSLPPHRPYDCAIDLLPGSSPPRGRVFSLSPPEQA
AMNAYIQESLATGIIRASTSPAGAGFFFVGKKDGGLRPCIDYRGLNKITIRNRYPLPLMATAFELLQGASIFTKLDLRNA
YHLVRIRQGDEWKTAFNTPTGHYEYLVMPFGLTNAPAVFQALINDVLRDMLNIFVFVYLDDILIFSKSMEEHEGHVSRVL
QRLLENHLFVKPEKCEFHVSLTKFLGYIVTPGHLEMDPSKIKAVLNWPIPTTVKEVQRFVGFANFYRKFIRNFSSVVAPL
TALTKGGGVKIEWGPKAAAAFQDLKDRFTSAPILSIPNPDIPFMVEVDASDVGVGAILSQRNEDGKLHPCAFMSRRLSNA
ERNYHVGDRELLAVKLALEEWRHWLEGARHPFQVLTDHKNLEYLQQAKQLNPRQARWSLFFNRFQFILTYRPGSKNLKPD
ALSRAYSPETHEKPVSSIIPSSRIVAPLRWDLEQVVRKAQTKEPDPGNGPLGALYVPRAVRAQVLQWGHESVLTCHPGSS
RTLEFLRRRFWWPSIKEDVKGYVEACQVCCQGKSSHQRPQGLLHPLPVPHRPWSHLSLDFITGLPLSQGNTVILVVVDRF
SKAARFIPLPKLPSAKETAELIISHVFRVFGIPQDIVSDRGPQFLSRFWGAFCRLFGTTASLSSGFHPESNGQTERVNQD
LETTLRCMAANNPTTWSSYIMWAEYAHNTLKSSATGLSPFECQFGYSPPLFPEKEVQVGVPSAQHFVRRCRRTWRRARSA
LLRTSLRYQHQANRRRRRPPTFRVGQRVWLATKNLPLRVESRKLSQRFIGPFRIARKVNPVSYRLYLPRSLRINPTFHVS
LLKPVLSSPFAPPRRPPPPPRIIDGQPAYTVHRILDSRRVQNSLQYLVDWEGYGPEERSWIPAKDILDPSLIREFHTQRP
GCSGRNVRSRS
>Gypsy-142_AA#LTR/Gypsy 3109-5910  [Aedes aegypti]
MPFADDYFGDRSKEVCFQIVPSSDNNLSDPTENIDESLEMPTVELPQKTFETLDDLSTEHLLSDTERKALFEAIKQLPET
HEGSLGRTQLIQHRIDLLPDAKPKRIAYYRWSPNVESVIDAEVERMEKLGVIEECHGPVDFLNPLLPIKKANGKWRICLD
SRRLNQCTKKDDFPFPNMMGILQRIPKSKYFSVIDLSESYYQVPLEASAKDKTAFRTNKGLYRYTVMPFGLTNAPATMAR
LMTRVLGHDLEPYVYVYLDDIIIVSNSIDEHIRLIQIVAERLRRAGLTINLQKSKFCQKKIKYLGYVLSEEGLSMDVSKI
QPVLDYPAPKTVKDIRRLLGLAGFYQKFLPNYSEITTPITNLLRKGMKKFQWTEEADAALQKLKTALVSAPILANADFSL
PFIIETDSSDLAVGAVLAQVHDGVRKPIAYYSKKLSSTQRRYSATERECLAVLLSIENFKHFIEGSQFIIQTDAMSLTFL
KTMSIESKSPRIARWALKLSKYDMLLQYKKGSDNVPADALSRAVNTIDVTSSSDPYITQLIKMVQTVPERYPDFRISDGK
VYKYIIGSTVSEDPSFRWKYVVPVVERRDIIRRIHSEAHLGFVKTLSKIRERHYWPRLASDVKRFCSQCEICRESKTPNI
NVQPICGKPKHCSRPWELISMDFLGPYPRSKRGNVWLLVVSDFFSKFVMVQCLRSATAASTCNFVENMIFNVFGAPSICI
TDNATVFKSELFQKMLQRFSVTHWPLSVYHPSPNPAERVNRVIVTAIRCSLNREKDHRDWDKDVHQIAKAIRTNVHESTG
FSPYFLNFGRNMISSGSEYEALRESESPKSPQEVSKDMELLYSKVKENLLKAYQKYSHPYNLRANRKHQFEKGDVVYKKT
MYLSDKSRNFVGKFANKFEKVRVKEVVGTNTYVLERLDGQRIAGSYHGSFLKRV
>Ogre-MT4_pol#LTR/Gypsy  6349-9822 [Medicago truncatula]
MCRLNISESVEHSDPMLSPNFEVPVYEAVAEEDEEIPNEIKWMLEQERKTIQPHQEEIEIINLGTEEDKKEIKIGALLDV
SVKKRVIELIREYVDIFAWSYKDMPGLDPDVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEEVRKQIDAGFLVTSEYPQ
WLANIVPVPKKDGKVRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWG
AFCYVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRS
GKLLGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKDQGVEWNDDCQKAFD
QIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDETGKKEHAIYYLSKKFTDCESRYSVLEKTCCALTWAAKRL
RHYMINHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRTQKAVKGSILAEHLAHQPIEDYQSIKFDFPDEEV
MYLKAKDCDEPVFGEGPDPESEWGLIFDGAVNVYGSGIGAVLITPKGTHIPFTARLRFDCTNNIAEYEACIMGIEEAIDL
RIKKIVIYGDSALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNTVPVI
NVQFLDRPAYVFVAEAIDDDKPWYHDIQVFLQTQKYPPGASNKDKKTLRRLSSRFFLNEDVLYKRNFDGVLLRCVDKHEA
EKLMCEIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYADKIHIPPSMLNVISSPWPFSMWGIDMI
GRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVRFIKNNLISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQH
HNSSPYRPQMNGAVEAANKNIKKIIQKMVVTYKDWHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRV
LMEAELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDKGVHPREFKEGDLVLKCIKSFQPDPRGKWTPNYEG
PYVVKRAFSGGALILTNMDGEELPRPVNSDAVKKYFV
>QUASIMODO2_DM_gag#LTR/Gypsy 781-2064 [Drosophila melanogaster]
MAVAAPSPIILSDSNMIQVERQINGVEQFNGDPQTLYTFISRIDFILALYQTTDERQKLTIFGHIERNIAGEVIRTLGVT
NLTTWTELRTHLILNYKPQRPNHLLLEDFRNTQFRGNVREFLEEAERRRQILTNKLDLESDTAETTLYNQLIRTSIETLI
LRLPIHIQLRIVKCEIPNLRSLINILQEKGIYEIATTYKNNTKPVSNPIKSPNNATHRQTTNYYNHTTPFQPSYNAMYQP
IRQPISYIPPQLPRTNPNPFSQYQYRQLHPQPNVSVIAQPRPLNRQHTFDQNRPGLSYSNALNTRENITTGGPALKRQRP
SDSGQSRMSFDEAHYQEELDQTHQQFNPYMHYGNHPQYPFDLYMPYGPPPNNIPIYYMPYDPPQQHPVGIQEMAEAREEP
TEPPMELITEAQTAENFRPQASEQANS
>POPGY1_gagpol#LTR/Gypsy 161-5488 [Populus trichocarpa]
MRVWSRTLSGRLCRVSSSFSENMAEEDNQSLHNENNENIRVRTLRDHMNPTRTSAPSCIVFPPDASHFNFKTGIIQLLPS
FHGFDLENPYLHLREFEEVCNTYNDSNCSMNTIRLKLFPFSLKDKAKTWLQNLRPGSIRAWDEMQQQFLKKFFPSHRTNS
FKRQIITFTQKPGETFYQCWDRYRDLLNTCPHHGFETWRLVSHFYEGLTPRDRQMVELMCNGTFEDKDPNEAMEYLDLLA
ENAQNWDTTGTYEAPSKTQPHTSSGGMYNLREDHDLQAKFASLARKVEALELKKSGQLKSVQDIACQICETNEHSTNDCP
TLPSFKECLHEQAHALNSFQRPNHNPYSQTYNPGWRNHPNFNWKNENNNAQTSQPPFQAHHNFQNSHGYAPPYAPPPRRN
LEETLHAFMEKQEAINTQLAQSMTDFKDTLAKFTSALSFQEKGKFPSQPQQNPKGQYHANASSSGSQHMDHVKSVITLRS
GKVIEKPILEPCENDDESISEGKEGVESDHCKEKTDSPLALPFPHAMTKQRKVNHNSEIFETFKQVRINIPLLDAIKQVP
SYAKFLKDLCTVKRKLNVKKKAFLAEQVSAILQNNNALKYKDPGCPTISCFIGEHKIERALLDLGASVNLLPYSVFQSLN
LGELKPTSVTLLLADRSVKVPRGIVEDVLVQVDKFIYPVDFIVLDTQPVEACNSFPVILGRPFLATSNALINCRNGLMKL
SFGNMTLEMNIFNICKQPGDDNDLQEVDFTEKLVHDQFQTTSSEIEIDESEDLQMVYFQEESKENSWRPKIEKLPPRSID
SIPSSVQPPKPDLKPLPFNLKYSFLGENETFSVIISSKLNAHQEGKLLQTLKMHKNALGWTIADIKGISPLICTHRIYLE
ENAKPSREMQRRLNPNMKEVVKNEVIKLLDNGIIYPISDSKWVSPTQVVPKKSGVTVITNKKNELIPTRTITGWRMCIDY
RKLNSMTRKDHFPLPFMDQILERVAGHEFYCFLDGYSGYNQIEIALEDQEKTTFTCPFGTFAYRRMPFGLCNAPATFQRC
MLSIFSDMVERFLEIFMDDFSVFGDSFDDCLTNLEKVLSRCEEKNLVLNWEKCHFMVTNGIVLGHIVSSKGIEVDKSKIE
LIANLPTPKSVKDVRSFLGHAGFYRRFIKDFSVISKPLSNLLTKDNIFEWNEHCEEAFVKLKNLLTSAPVIQPPDWSLPF
EIMCDASDYAVGAVLGQRKDKKPYVIYYASKTLNRAQMNYTTTEKELLAVVFACEKFRSYLVGSPVVVFSDHAALKYLLS
KKDSKARLVRWILLLQEFDITIKDKKGTENVVADHLSRLTTDSRSDITPIDDYFPDESLFSVSTMPWYANIVNFLVSGQL
PAHWSTQDKRKFLNEVKNFYWDDPYLFKYCPDQIFRRCIPDNEVSSVIKFCHSEACGGHFSSRKTTAKILQSGFYWPTMF
KDSHAFCKTCENCQKLGSISKRHMMPLNPILVIEIFDCWGIDFMGPFPPSFGFLYILVAVDYVSKWIEAIPSRNNDHKIV
IKFLKENILSRFGIPRAMISDGGTHFCNNPFESLMKKYGITHKVATPYHPQTSGQVELANREIKQILEKTVNPNRKDWSL
RLNDALWAYRTAYKTSLGMSPYRLVYGKPCHLPVELEHKAYWAIKAFNSNLDDASQLRKLQINELEEIRNDAYENSKIHK
ARIKEFHDKRILRKTFDVGQKVLLYNSRLHLFPGKLRSRWSGPFIVKRVYPYGACDIENPKNGNVFKVNGHRLKVYFDNF
SVENDSIKLSDPVYKE
>RAGypsy2_MT_gag#LTR/Gypsy 1045-1938 (may be a low quality consensus) [Medicago truncatula]
MSSSKFGSHMQTLVQTGKMDRLEQEVHELRGEVTTLRAEVEKLTSLVSSLMATKDPPLVQQRPQLLCQPTCMKRPRQQGS
QSLIPQNQVRKASQCDPIPVKYADLLPILLKKNLVQTLPPPQMPNPLPPWYRPDLNCVFHQGAPGHDTEQCYPLKEEVQK
LIENNVWSFDDPDIKVLLQQQHMSSHSIATLRSITNVVQDPGYQSQFQQYQQQPRQRASGQPQFDSIPMKYAVLFPDLLR
RKLVQTRPPPRMPEKLPTGYRPDLSCVFHQGAPGHDIERCFAFRNEVQKLIQDKVLRF
>RAM12_gag#LTR/Gypsy 133-891 [Medicago truncatula]
MAGRNDAAIAAALEAVAQAVGQQPNAAAGNGEVRMLETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRF
GTHMLAEEADDWWVSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKKEIEFLELKQGDMSVTEYAAKFVELAKFYPHY
TAETAEFSKCIKFENGLRADIKRAIGYQKIRIFSDLVSSCRIYEEDTKAHYKVMSERRGKGQQSRPKPYSAPADKGKQRL
NDERRPQEERCSC
>RAM4_pol#LTR/Gypsy 3737-7370 via tfasty with Atlantys_LC_pol, 2 frameshifts. [Medicago truncatula]
MALSLRLPNMLPHLWGGAQEIEIMSSTNMWEKITAYLAEKEPQTAREAESSKSGSIEKPKDGLIDVEVEDQKLDCIYDDE
PLGFEEDPMGSTTKMKAQDPLEEIDLGDGTVKKPTYVSAKILEKFRCQIAELLKEYKDCFAWDYNEMPGLKREVVELKLP
IRQNKKPVKQIPRRFAPQILPKIKEEIDRLLKCGFIRPARYVDWLANVVPVKKKNGIIRVCIDFRDLNLATPKDEYPMPV
AEMLVDSVAGFDYLSMLDGYSGYNQIFIAEEDIAKTAFRCPGALGCYEWIVMPFGLKNAGATYQRAMNLMFHDFIENFMQ
VYIDDIVVKSSSEERHLEHLRQSFERMRQYGLKMNPLKCAFGVCAGDFLGFVVHKKGIEINQNKTKAIIETKAPSTKKEL
QSLLGKINFLRRFISNLSGRTQAFSPLLRLKKDDVFKWEPEHQKAFDEIKSYLVNPPVLSPLLKGKRMKLYIATSDGTIG
SMLAQEDEYGAEKAIYYLSRVLNDAETRYHPSEKLYLCLFFSCTKLKHYIKPFDVYVYSHFDIIKHMLSKPILHSRVGKW
ALALTEYSLTYQSLKAVKGQIVADFIVDHSMSEVLTTEIDNHPWCLYFDGSSHKNGTGIGIVLISPKHHKFEHMFRISRF
CSNNEAEYEALITGLEIALELGARCIEIKGDSELVLKQMTKEYRCVKESLVTYHAIASRLLKQFNHVGIRHIPRMENQDA
NDLAQKASGYKMSKEQMQEPIEIRNRRNSIECFSGKSLTPKLGGTRASQASLNGTDSIEIFVINDLNENDWRKPIVDYLE
NPNGTTPRKMKYRALSYVIMGTELFKKTSEGVLLKCLGETDAYLAVSNTHDGACGTHQAGHKMKWLLFRQGLYWPTMLKD
CIEFAKGCQGCQKYAGIQRVPASELHAIIKPWPFRGWALDVIGEIKPTSSKGYKYILVGIDYFTKWIEAIPLKDVTQEEV
ISFIQKFIIYRFGIPETITTDQGSIFTGRKMVKCAEDTGFKLLTSTPYYAQANGQVEAANKNIIAIIKRKIKAKPKNWPE
ILGEALWACRTSPKESTNTTPFRSTFGHDAVLPVEILLQSVRIQRQCEIPVNHYWDMVIDELTDLDEERLTALEVLARQK
ERVAKAYNKKVKSKFFAQGDLVWKVILPMDKKDRALGKWSPGWEGPWQILRVFSNNAYEIEELNDDRRILRINGKYLKKY
KPTLQEIKIIQE
>PGGypsyX1#LTR/Gypsy 1-2230 via tfasty with CRM, 4 frameshifts and 4 stopcodons.  [Picea glauca]
PYTIRWLHQGRDLHVSRQIRLPYNIKPFTDQVLCDIAPLDVSDVLLGQPYLWKQHVVYESRPHAVIITLDNKLYRIPEIA
PPTTISLVTVKQCSKLISKTRKFVFLMIRPQGKRKTVAITSRQGPTAGKKQMDKVVEEYEDIFTSPAGVPLHCQVKHPIN
LNPGAPLPNGPIYRHSILENDEIKRQIQELLQKGHIRPSSSPCGSPIVLVQKKDGTxRLCIDYRALNKITVRNRYPIPQI
DDLLDQLKGEKYFSKIDLKSGYHQVPIEPSDVWKTAFKSKEGLFEWLVMPFGLTNAPATFMRLMDDILRPFTNSFVVVYL
DDILIFSQTWEEHLHHIRQVLQTLRQHKLCANLEKCTFGITQVQYLGYIIDERGVHVDPEKIQVIQDWPAPATLTELRSF
LGLANFYRRFVLGFFHITWPLSQVTKGGAKAKFFWSESQQKAFGELKHRLCSAPVLTLPDLQQPFEIEIDASDYAIGAVL
TQHGHPVAYHSETLFDTVRKYPTYDKEMYSIVQACxQWKHYLWEKETVIHTDHxPLQFIQTXGEVAERSPSPQSTTHRWA
LNHCAQFLWARDFRLAALYTSDPEFDHTXNTLLKGKQVPNFHLQDALLCHLGHLFVPSSEHAKMIWEAHYSRVAGHFGVE
KTVAILQKYFYxLNLRQDFGKYIKSCTACAIAKPTIKKQGLYTLLPTPSRPWESISMDYMSGLPSTKHSNDCVFVVVNRF
SKMSIMMACKKNITAEATAKLF
>Ogre-PT1_pol#LTR/Gypsy 6342-9867 via tfasty with OGRE_PS_pol, 1 frameshift and 2 stopcodons.  [Populus trichocarpa]
MQIFFQSCFSFSLFIYLLSHNHTLTIETLSAFRKSESGSSYTSQTHCTVDNWLNFDETIIAMDEEEFGEEDIHEFTRLGE
QSDRTWKPAKEELELIDMGTEHNKRELKIGKLISAGVRSELVALLREYVDVFAWSYADMPGLDTDIVVHKLPLIEGCKPI
KQKLRRTRPDILIKVKEEITKQWDAGFLEVVDYSQWVSNIVVVPKKDNKIRVCVDFRDLNRASPKDNFPLPHIDVLVDNA
AKSSTYSFMDGFSGYNQIKMAEQDKKKTTFVTPWGTYCYRVMPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKS
KDEGNHIPALKKLFERLRKYQLKLNPAKCTFGVKSGKLLGFVVSNNGIEVDPDKVKAIQAMSAPKTEKEVRSFLGRLNYI
ARFISQLTVTCEPIFRLLxKKNPGVWDEDCQEAFDKIKQYLQKPPLLVPPVPRKPLILYLTVTESAMGYVLGQHDESGRK
EQAIYYLSKKFTECESRYSMIEKLCCGLVWSAKRLRQYMLYYTTWLISKIDPLKYIFEKPYMSNRLARWQVLLAEYDIIY
KTRKSVKGSAIADHLADNAVEDYEPLNFDFPDEDVLVIESDWWTMYFDGAVNVSGNGAGAVIISPEGKQYPISIKLQFSC
TNNTAEYEACIHGLEAALELKIRKLGVYGDSMLIICQTKGEWQTKDEKLKPYQEYLSKLAENFKEIEFNHLGRDKNQFAD
ALATLASMATIDCGIRVHPIGIDIRSSPTHCCLVEEEVDGSPWYTDIKRFIQYREYPSEVSKTDKKTLRRMVMEYFIDGE
ILYKRSFDGTLLRCLDRSEANKALCEVHEGICTTHANGHMMARQIQRAGYFWLTMEKDCIxFVRKCHKCQVYSDKINAPP
VPLFNMVSPWPFAMWGIDVIGPINPKASNGHRFILVAIDYFTKWVEACSYAHVTQKVVKRFIERDLICRYGLPERIVTDN
AKNFNGKMIVELCTKWKIKHSNSSPYRPKMNGAVEAANKNIKKIVQKMVVTYKDWQEWLPYALHAYRTAIRTSTGATPYS
LVYGMEAVMPLEVEIPSLRVLMESELEEAKWVRRGRSDTTSEKRLAAICHHQLYQNRIARAYDRKVRPREFKEGDLVLRK
ILLLPSENHSKWAPNYEGPYVVKKAFSGGALILTGMDGEDLSRPVNSDAVKKYYP
>Ogre-PT1_gag#LTR/Gypsy 2894-6205 [Populus trichocarpa]
MENEERNQLEIQHQRELESLKEDVARLTSLLEQALRPRAGEGTSSQQTFTPQPPPPFIPPSEPQHAAHFVPTQSAHPMRV
PHSVLIEEEPQRNKIIEENGHEKLAALEERMKAIEGNSLYDPVKAVEMCLVPNVVIPRKFRVPEFVKYTGTQCPITHLKA
YCNKMAEVVYDEKLLIHFFQDSLSDAALAWYMRLDNTKIKGWKDLVKAFIRQYKFNMDIAPDRSSLQAMEKGNKESVREY
AQRWRESAAQVNPPLSEREMTGLFSNTFKAPYFEYLVGSAAQNFSDLVVIAERIEQAVRTGRIVDPTEKRGFIGKRKETE
VHNVERESRGKNTYQDIYSFKSITPTPSISNIKFSSPTNTQNNPISNQTNNAYRPRRNFPIDQVQLPPLPMSLTEMHQRL
LGIGQVAPVPLEPLQPPFPFWYKPDQKCEYHAGAVGHHIDGCVAFKRKILQLIKAGWISFDESPNVNSNPLPNHASGGGG
VNSLEIGRGSTTTLRVTMDRLYGMLRQTDYLKTPVKIQAVRSANEYCKYHQQLGHDIDSCEEFHLEVENIMTLGMLRLMK
LKEDELVGTMTGCNQKVEVCRYIPTEKGPPRMILAKPMNTVSGSYNAQPYNYGYSFHSTNPAPVFHAEIGGLTRSGRCFT
PEELENHRKAKGKDMVELTKTDEVNKPVSDEEANEFLKLMKHSEYSVVDQLKKTPARISLLSLMLSSELHRNALQKVLNE
AYVPQDITQDSIEHLVGRIQATNYLYFTDDELDHEGTGHNKPLHITVKCKDCVIAKVLIDNGSALNVLPRHVLDKMPVDA
SHMKPSTMTARAYDGSPRPIIGSIDVELIIGPQPFQVTLQVMDIHPSYSILLGRPWIHAARAVASSLHQRVKFIINGNLV
TVRAEETLSMIKNVSIPYIETEESKDGNLHAFEVVNAEWVPENTVRRKPEISEAAKMAAKYFLKHELPFQYDHTTGMPER
VNVIKMKCADQRFGLGFKPGKADFKRAAEIRRKKRIARIERREPDEDRIEIPPIHVTFPRSAYVIKTEDYEGGLRKEFNS
VTINYLEKVGEQDLKEEDSTHEQLPQLTIGVLEDGSSEFVRKLAEGEDLANWEIHEVPIVFKK
>Ogre-PT2_pol#LTR/Gypsy 6495-10004 via tfasty with OGRE_PS_pol, 2 stopcodons.  [Populus trichocarpa]
MHFPQIAFFFMHLHQTLPAFRNPESGSPTTSHIFSIKNKWPNLNEHVIAMEEEEWDESNISEFTRLVEQQEQTWKPIAEE
LETINVGSDQLKKELKIGTLVTSEQRTKMIALLQEYADVFAWSYEDMPGLDTNIVVHKIPLEEGCKPVKQKLRRAHPDVW
IKVKVELEKQWDAGFLEVVRYPQWVSNIVVVPKKEGKIRVCVDFRNLNKASPKDDFPLPHIDVLVDNAARSSTYSFMDGF
SGYNQIKMAPEDKTKTTFVTPWGTFCYKVMPFGLKNAGVTYQRAMVTLFHDMMHKEIEVYVDDMIAKSKRGEDHVEVLRK
LFERLRKYELRLNPAKCSFGVKSGKLLGFVVSDRGIEVDPDKVRAIQAMSSPKTEKEVRGFLGRINYIARFIAQLTTTCE
PIFxLLRKKNPGTWNEECEEAFNKIKHYLQNPPLLVPPVSGKPLVLYLTVTEAAMGCVLGQHDETGRKERAIYYLSKKFT
ECESRYTEIERLCCALVWAAKRLRHYMLYYTTWLISKVDPLRYICNKPFLSSRIARWQVLLAEYDIVYMTRKAVKGSAIA
DHLADNAVEDYEPLDFDFPDEDILSIEKEEENTDWWTMFFDGAVNVYGNGAGAVIISPDKKQYPVSVKLHFECTNNTAEY
EACILGLEATLELKIKKLDVYGDSMLIICQVKGEWQTKEEKLRSYQEYLSMLAKEFEEIRFTHLGREGNHFADALATLAA
MTTIDLKCKVQPVHIDIRNDPAHCCLVEGEIDGQPWYYDIKNLVQNQEYPVGASKTDKKTLRRLATDFYLDGEILYKRSF
DGTLLRCLNEADARKALREVHEGICSTHASGHMIARKIQRAGYFWMTLEKDCIDYVRKCHKCQVYSDKVNMPPAPLFNLI
SPWPFAMWGIDVIGPVNPKASNGHRFILVAIDYFTKWVEANSYAHVTQKVVKRFIEKDLICRYGPPEKIVTDNAQNFNGK
MIVELCTKWKIKHSNSSPYRPKMNGAVEAANKNIKKIIQKMVVTYRDWHEMLSFALHAYRTTVRTSTxTTPYSLVYGMEA
VMPLEVEIPSLRVLIDSELEEAEWAKVRYEQLNLISEKRMAAICHHQLYQKRMAKAYDKKVRPRLFQEGDLVLKKILSLP
GDDQSKWAPNYEGPYIVKKAFSGGALKLARMDGEDLARPVNSDSVKRYYA
>OSR42#LTR/Gypsy 206-4887 via tfasty with SZ-59, 1 frameshift.  [Oryza sativa]
MENEAKLDLLLKKMEETERKREEGEKKQSLEMRVFKEAVESWIPAVEKKVDVLQSTVDMLQTQVAKLSAPPPTNSATPSS
SSPSGAAGVRAIDSTGLNGQGAANSTREEADGVFNTPKPPPGNGTLASQNFSPFHCRVDASAMNSFQSGTSVGLTGGVAP
MTCPKFDGDNPIMWKVNCESYFDLYGIHPINWVKVATLNFTGNAAFWLQAVRSQLEGVTWEELCDRVCTRFNKDRQQALI
RQWFKICQTGTVADYVEKFDSIMHQLMAYDPTFKPVYFVTKFVEGLKHEIRSAILLQRPGDLDAACTLAFLQEEALEGDK
GIDIKKGEGSGSAKHSVRVALPLPTPPTVKGGSPSFAEERRISDNGRSQNREMDRLATLKAYRRSKGLCFTCGEKWGREH
KCASSIQLHVVQELLAVLQGPDISSEEFIVQSDDSLMAISIQAINGTESNHSIRLRGWLQGIEVLMLVDSDSTHSFVDHQ
LGLKLTGVKSMASPARVKVADGGHLNCSLYVNNCDWLTQGIHFKSNFRLLSLGTYDVILGMDWLEQFSPMKVDWVQKWLE
FQFQGSTVRLQGIQSHISSCLPITPDQLTGLLKSGSALFLIHLDSNHTSHITTIPAHVQPLLDEFQSVFQEPTELPPKRL
CDHKIPLLPGSKAVFIRPYRHTPAQKDEIERQVKEMLQNGIIQHSSSPFSSPALLVKKKDGSWRVCIDYRQLNAITKKGT
YPMPIIDELLDELAGAKIFSKLDLRAGYHQIRMAEGEEFKTAFQTHSGHYEYKVMSFGLTGAPATFQGAMNDTLRPLLRK
CALVFFDDILIYSPDMNSHLDHLKQVLQLLDTHQWKVKLSKCDFAQTQISYLGHIISGQGVSTDPSKIQSIVDWAVPTTL
KKLRGFLGLAGYYRKFVKDFGTLSKPLTQLLKKDAPFVWSAEVNQAFQALKHALTSTPVLALPNFQQGFTIETDASDIGI
GAVLSQNQHPVAFVSKALGPRTQGLSTYEKECLAIMMAVDHWRPYLQFQEFLIITDHHSLMHLTEQRLHTPWQQKAFTKL
SGLQFQIVYRKGKHNAAADALSRHVPEETSEFLGISTCSPVWLQDILHGYDQDPLALSLLTGLAVNPSSYPHYSLSKGLI
KHKGKVWVGNNSNIQQQIISALHDSPLGGHSGFPVTYKRIKSLFSWPHMKLTVQKQLASCAVCLQAKPDRSKYPGLLQPL
PVPDGAWQIISMDFIEGLPKSYHQDCILVVVDKFSKYAHFMPLSHPFSALDVAKVFMLNVYKLHGLPQIIISDRDKIFTS
ALWEQLFLRSGTKLHLSSAYHPQSDGQTERVNQCLEIFLRCFVHATPAKWSLWLHLAEFWYNSSYHSALNKTPFEVLYGY
PPSHFGIRADACVISDLDSWLSERHLMTQLLRQHLNRAQQVMKTQADKKRSFRSFQVGDWVFLKLQPYVQSSVAKRANHK
LSFRYFGPYQILSKVGSVAYKLQLPADSMVHPVFHVSQLKGTQNFKHSIQSQLPNITDHIQYPVQILDTRIQKKGNKVVR
QILVCWSNLPAVEATWEDEEELKQRFPSALPWGQVSLQGVG
>OGRE_PS_orf1#LTR/Gypsy 823-2463 similar to Gypsy_MT_orf1 [Pisum sativum]
MATVPESKRKTCSYSFYREPLTSLIELGSLMPSDQLKGFVGQFGDILTLLKTVVDPVPLQTLLQFYDPELRCFTFQDYQL
APTLEEYSILMSIPIQHQVPFLDVPKEVDFRVIARALRMSVKEVCDNWKPSGEVVGMPLKFLLRVAREEAEKGNWEVFHA
QLAAMIYGIVLFPSMPNFIDHAAISIFIGGNPVPTLLADTYYAIHSRHGKGGAIRCCLPLLLRWFMSLLPASGPFMDTQS
TLKWTQRVMSLTSYDIRWQSYRMDVKDVVMSCGEFRNVPLVGTKGCINYNPVLSLRQLGFIMSRRPLEAEIVESVYFEKR
TDPVRLEQIGRAWKSIGVKDGSVLGKKFAIAMPDYTDWVKKRVETLLLPYDRMEPLQEQPPLILADSVPAEHYKQALMEN
RRLREKEQDTRMELYKAKADKLNLAHQLREMQGEDASRARSKKRSYKEMESMLDTEHRECLRLQRAEVNYQKKIRDLEKQ
LKDKDTQLKKEMELRQKSKDYLEEEVLELRRQLKEKITPLPECSECTLLIDQCHYLKTLIPEDRLS
>Gypsy-10_AA#LTR/Gypsy 63-4058  [Aedes aegypti]
MTSENKSNPFQGSSVQKVAMLGRMDPFIPGEDFEVYMKRLKMYFIANGIPDSLKAAVLITVMGNETFQILDSLFSPEDPC
EKTFDQIVDKLKNQFKPMVIVAAERYKLYTRKQKVNEPNAEYVVALKHLTQSCNFGTFLADALRDAFIIGIQNQKIRRRL
LSEELCQAYKIASSMELANVEETKLNVDNGLNHVVYRKKNVTSESVKRGGGITKQTIDQQKVKHCTRCGRSNHVNNKCPA
ANVMCYKCRLRGHFANQRRTRNVHSLQENDGDGSDDEIVDVISWVAEGNDPLHVPVHVEGKEVIMEIDSGACKSIISEDE
YREKFNHIKLKQGSKSFQVITGQKFRPLGVGEFRVSLPNTKNMIKLEMSVVQSEFKFKPLLGRSWLNALYPGWKSRLVTR
ENNDLHLIDNVMNEAVKTDTEEMNSNFLKVLRDTYPQAFSEDSSVPIKEFEVDIIMKEHTPVFHKAYELPFKMRESVEEE
LNRMVDGGILKPVKHCRYASPIVAVPKSDGKSIRICVDCKRTINPFVQTEHYPLPRIDDILASFPGCKVFCVLDLKGAYQ
QLALSEESKKYLTINTHKGLFQFQRLCYGVSSAPSIFQQVIDQILRGLKFVKSYIDDTLIGGKNYADCLNNLKLVLERLN
MYNVHVNIAKCSFFLPQVDYLGHTLSEKGISPNNDKIKAIVHAPSPTNNSQLLSYLGLLNYYSRFLPNISSLLRPLYDLL
KKNASFRWTEVHQKAFEDSKQLLLSNSLLEMYDPNKKLIVSCDASPYGVGAILSHEINGELKPVIFASSTLSPAEQNYSQ
LHREALAIMFAINRFHKYIYGYQFELHTDHEPLQAILNPKKCKNAIAVARLQRWAVQLSMYNYVVKYKSSMKMRHVDALS
RLPLMDETKVDFVKSLNISEEVPIDLEMIRECSKTDPLIIKLIKLCQSGWTKMNHADPELKYYQKLQHCLSVEDGCLVYR
DRLVIPDQVKTNILRLLHEGHIGIVRTKMLARQYVWWRNIDSDIEEFINECSVCQQTQKKTPSVTVPWPKPSAALERVHV
DLFYFGKFTFFIIVDAFSRWIEVFRLNTSNAKTIIDYFRKFIVTFGLPKEIVSDNGPPFNAYQFIDFCNRQGIKVTKSPP
YHPESNGLAERGVQTVKNTLKKCLLDLRYRTLTIDEQIDNFLFKYRNTPNAVSGFSPSEVMFKFKPKTLIDKLSIKQQCN
PKTDYKTNNEYVSKENIKSFKKGEKIMYMNHFKSFCKWIPGRIIDKLSRTLYRIEINDNVRIVHVSSIRKSKLSDKYHPN
VSTSSQVETRLPQVIIKKKIIKKNQNMQSKWSDFSKLRRSQRKRKPPVFYKC
>Gypsy8_Dya_env#LTR/Gypsy 8764-10309 via tfasty with TIRANT_env, 1 frameshift. [Drosophila yakuba]
MTNAKELTFKPLTNDQAIIKVQLGKARTVSAFTTIQHTIHLNEYEIAAKGLYKLIGDLPNKSEATNLKSLLLAKLDLINH
RLASLLPNTNSGRIRRGLINGLGTIVKIVSGNMDANDEDRINKQLANLNNNEERMNRFKNETIFRFREIATHINREQEIM
TDIINSNQNKIFKELNTGQRDLELDRLIHRLNINLDLLYAHLTSVAESLLFSKLKIIPKYILTNPEIIKIRNSLTTQGIQ
INADHEIYELLSLRTSTSKKNVTFEIKIPILSTTNYKLYQIIAIPFNGTQIVNLPNYILRNNEELNIVQDPCIKVNSEFV
CETPTIPGSQSCLHNLLNNKPATCDTVETAGNQQIYSPMEGILIITNAVNLNISTNCAPERIVNGSFIVRYDNCSILANG
TRYADTITTITEKLQINLIKAEEVKTIPAGEPLSLRKLQLNTLKTEEDIAAIYDNATTHLTVICILLAGSTALAAAAWAL
RKNKTTYTATHVLPTGTPAIPSLWPSFRLEGGGVI
>Gypsy8_AG_gag#LTR/Gypsy 1070-2197 [Anopheles genus]
KQFKTGMITISDRIEILKHIFKKIQDPNQRTCTKTQLRIQAEETFKEIQKEIEKNKFKYTFNKLLEFSKISNALIHNIIA
MSTSKTNDDSHNKTSDCSTNSLEDKNTNLTLLTTNKLSFKLLAQTISAFLQLHKKSKMAFDLNSVGFSVLTGMQPFEGKA
SELTKFIDTVNTVKSIISSSNSLIAINLLLTKLGKEPRELFKELPKSFDEIIVTIKGRYTNTISVAKIYKQLCDRRKGKF
ENFNTFAKSLNELADQLQTAYIQENMTPDIAKTLTQQNVIIKLKEAGISRDSQLILDIKEFSSITDMLDTVKSYEGKNPP
HEQNSRTTNFTPNANAFKAAHSRVMHTQIQTNTPDKKEEEEGDRFLDDDQNQYPQ
>Gypsy9-PTR#LTR/Gypsy 33-4485 via tfasty with ATGP3B_gagpol, 1 frameshift and 3 stopcodons. [Populus trichocarpa]
MPPETRSQDARRVDETTNLEQPQAYDHIQQQLNDTRADANTRFRELKEAMDALVSRVDTTLQKTQLSSGECSLPKAPQFP
PPRDSPARFNWINEGTPPQYQLRRPKREFPIFERxDVLKWIYKCNQYFDVEEIVEQDKLKLASYYLDGMALCWHQSYMSF
MLQVWGREKPELIELKQKNDLETYIKDFDILWNRSEISEKNALVFFIGGLDVEVKNMIKMFEPKSLKQAYTLARLQDNTL
THRRYGSNPNKQTYHPTTFAYPNKPATPSSYNKNFPTRFPSTSLKPPQAGLLPNPPPYNPNITQRTTRPIRNRDVDERRA
KGLCFWCDEKFIPGHRCQNKKLYSLCVMEESGECSEDEGATDLDPDTYQPHISLNALEGVTGLNTLRVTGRVEKQPLVIL
VDSGSTHNFISNHVADRLHCNLTNIKALTVQVADGGIMACTSVCSNFQWSIQGVDFVTDVFTLDLKNCDMILGIQWLATL
KTIVCNYEEMWMAFIWQGQEVFIKGNDPVTMETVRLKQLNGLLCSASLVSEINLCSLGSINSQEQEKNPTSTGLQPGLAE
NTAFTNLQAEYQELFEEPKGLPPPRSHDHSIPFKEGSNPVNLRPYRHSSLQKDVVEHMVKEMLGLGTIQHSHSPFSSPVV
LVKKKDRSWRLCIDYRALNQLTIKDKFPIPLIDELLEELVGASVFSKIDLRSGYHQIQMAPESIYKTAFKTHNGHYEFLV
MPFGLTNAPATFQSLMNDLFRDQLRKFILVFFDDILIYSHSMTEHLGHLRTVFTILQTNMLYAKASKCVFCSPQVEYLGH
VISAAGVSTDPHKIEGILNWPLPCNIKQLRGFLGLTGYYRRFVKGYGIICKPxTQLLKKDAYRWNEEATLALPDLTQQFI
IETDASNRGMGAVLMQAGHPIAFISKSFGVxQQALSTYERELLAILLAVTKWRHYLWGKHFIIRTDHLSLKYLLEQKVTC
PSQHVWLAKLLGFDYEIEFKKGKDNVVADALSRVSCGTLSTMTVSSHSTTLLEAIKQSWQNVQLLIQELTLQPNSHPHYS
WSSRKGKLVVGQHGPLQTQIISLYHDSATGGHSGTTVTAKRVANRFHWKGQQKHVRQYIRECPICQQNKSENTRTPGLLQ
PLPIPTAPFIDISMDFVEGLPKSEGREVIFVVVDRFSKYAHFMAIPHPYTACSVARVFLDNVYKLHGFPATIVSDRDTVF
LSLFWKELFARQGVKLCYSTAYHPQSDGQTEVVNKCLENYLRCMKGTSPTRWVQWLPLAEWWYNTNYHTATKSTPYEIIY
GYPPFLHIPYFPKDSPVDAVDNFLCKREQILHAVKKNLQNARHRMIQLANKHRSERQLAIGDLVYLKLQPYRQKTLGHRH
SKKLASKYYGPYEVLARIGTVAYKLKLPISTSIHPVFHVSLLKKKVGNREVHPTLPDLPSEPLLLPQAILDRRMVKKNLQ
AATQLLVHWAGLTLAEATWEFADELALRFPQFNLEDKVYLKEGQ
>Gypsy10_DR#LTR/Gypsy 142-6108 [Danio rerio]
MSFRSDPQLQSELLEWCREAVIDPAHALLLTGVPQNTETACIEKVAESVKLFGRVRVRDSKGGATPTTLLVLCECREVVD
PTNCPEELHPTDGEEAWMIILATERESAHVAPAEFADKLSKFLKDEGKSMTDVHALFSPQSANPSSPESIIRAVGEILEK
TVRPSSDGSAYRRLRTFSGIVPTPVGEETMDHWIEQAKLMISECECSEKEKRRRIVESLKGPALEIIKAVRMSCPDAEAV
KYVEALESTFGSSESGEDLYFAFRLLRQCPGESLSAFLRRMEKSLTKVIQKGGLTSANADKARVEQLIRGAVESDMMLLQ
LRLRERKENPPTFLSLLNEVREAEEIEATRRKITATAKPIHLQEESICPTVVHELKAEIQELRAQIKSDRSNIASSMMIE
NRVKSRQLSPTDSKEVVKETEVQVLKKQVQQLQQQLAIMSVGQSNSTSHAQLPQTPVSSSSRHQLSKPKADYFCYRCGEE
GHIATKCKAPENATLVINKLVRSLKRAKGTKSDPNSHAEDRACFSKKSQIHSCESKGLPKGLVGPASTIAVKVGGHPCCA
LWDSGSQVTIVFDSWYSEHLSNVPILPLSGLSIWGLSSSNYPYKGYIVVDVTFPVALTGAEETVTILALVCPDPKGPQQF
PLIIGTNASFFQRMTNGEGTNITRSAHSLRIQTHLDTTSFAVDQPEGQVRWKGPGMLNVPSQGERYASCKIESDKPLRKD
IFLIETSPVDSLPAGLLVSPVVFSSSAVDVNNFRILIQNETSKELSVPPGTVVAQIFPTDTVTVAHGVTESNDQINPDVF
NFGDSNIPTAWEKRLRLKLAERKNVFSTQEWDVGLAKGVTHQIRLHDPHPFRERSRRIAPADIDDVRRHLKDLLAAGIIE
ESRSPYASPIVIVRKKSGAVRMCIDYRTLNSRTTPDQYVTPRIDDALDCLAGSKWFSVLDLRSGYYQIAMSEEDKEKTAF
ICPLGFYQFQRMPQGITGAPATFQRLMEKVVGDMHLLQVIVYLDDLIVFGSTLEEHEERLMKVLDRLEEWGLKVSIDKCQ
FCQPKVKYVGHIVSAAGIAPDPEKVAAVTQWKEPTDLKSLRSFLGFCGFYRRFVKNYSSIVRPLTELTKGYPPAKGKSKV
EGKKYFKETDQFGERWDNACKQAFQEIIKCLTQAPVLAFADPSLPYVLHIDASLSGIGAVLNQEHSDGLRPVAFASRKLS
ASEQRYHIHQLEFLALKWAVVDKFHDYLYGVPFVVRTDNNPLTYVLTSAKLNATGHRWLAALATYNFSLQYKPGKHNIDA
DVLSRYPAEPATSFSWTEIPQSGVKAICQLSNLSWSDEKSRLIDQLGVSPGSIPAVYSCPALLDVCHLEQLTHADLKLSQ
EQDPVIGKVKQDIARNKPLTPIKGSDPTLTLLQRQGPKLVIRNNLLYRVTKNQSGKEKVQLVLPEKYHLTVLRSLHDDSG
HLGVEKTTELLRDRFYWPRMTSDIEQYIKNCGRCITRKTLPQKSAPLSHITSSGPLDLVCIDFLSLEPDSKGIANVLVIT
DHFTRYAQAFPTKDQRAVTVAKVLVEKFFVHYGLPSRIHSDQGRDFESRLIQELLGMLGIRKSRTTPYHPQGDPQPERFN
RTLLSMLGTLEPAQKSKWSQHITQLVHAYNCTKNEATGYSPYQLLFGREARLPIDICFGISPAGEKGVTHLQYVEKMKAE
LQQAYQLAAETSLKAHQRNKKLYDTRVKPQLLTVGDRVLIRNLAVKGKNKLQDRWNSLPYVVVEKFKDLPVYKLRPERGM
GAIRTMHRDHLLPVGENVRFSKPNDSNPSTQSPVTRAQSGKRVQKEKKVENVEQVRDENHETSESEDDNLCYYYPKLIPA
LRTLPTPQIAVEPEIPAEYGPELNSECEARKDTVEEEAREVLNQPAEAVDDQGVGDNDHRNVPKPGSEPAVCRKSTREVK
PVIKLSYDDLGRPTDKPLTMVHRGMVVHIEDLSKTRKSCNTVWCHPMAQCSQCVPTAPGPIVRTVIQF
>Gypsy10_AG_pol#LTR/Gypsy 2445-6197 [Anopheles genus]
AIRQPKFFRATRATKSSALHSGGDPEPTGGPALHKPIRATYTINVQKSNFIKTRLGLADSICNLFVDSGSDISIIKGNKV
RPTQTYKPKDIVDIISVGEGTITTHGSTITDVIVEGKKIQQLFHIVPDNFKIPADGILGRDFFMDHRCIINYDTWIFSVK
HDGEFLETPIEDTINDKTLIPPRCEVIRKLDKLKELDTDAVVCAEQLQEDVLVGNCIVNKNYPFIKIINTSNKAKLVNIS
HIKTIPLNEFEIVKTNNHKNENRLAIIKELIRKENISEDTDTSFEQLLLSYNDIFHLPNDHLTTNNFYKQDIKLEDKRPV
YIPNYKQNHSQGPEIKKQIEKMLQDDVIEHSVSHYNSPILLVPKKSSDEKKWRLVVDFRQLNKKLLPDKFPLPRIDSILD
QLGRAKFFSTLDLMSGFHQIPLEESSKKYTAFSSTDGHYQFKRLPFGLNISPNSFQRMMTIAMTGLTPECAFVYVDDIVV
VGASENHHLKNLEKVFDRLRHYNLKLNPEKSCFFKKEVTYLGHKITDKGILPDDSKYDSIKNYPIPQNADDVRRYVAFCN
YYRKFIPNFALKAKPLNSLLKKNTKFEWTQECQEAFEYLKNTLISPQVLQYPDFSKPFILTTDASTMACGAVLAQEHGGK
DMPICFASRTFTKGEANKAIIEKELAAIHWAIMHFKHYLYGKKFTVKTDHRPIVYLFGMKNPSSKLTRMRLDLEEFDFTV
EFVKGKQNVVADALSRIKITSDEIKSINVITKSMSKPVTSDNVLGNTSESDQLKMFHALAYDEVKDLPKLESSVKKNEDT
IELIGKILNKRKSKELLSVRDIHLKTDIGLQEPLLVKDFQRRKEKSAIVQFIKNIEKKLVMKSITQLAISETDEIFKEVH
PNELKQIANNHLKNIQILIYTKPQKITNEKTINDILDKVHNTPTGGHIGQYKMYKKIRREYSWNKMKKTIKEFLDKCLTC
KLNKHQTKTAEPFVKTDTPNTPFEAVSIDTVGPFQKTNNNNRYAVTIQCNLTKHVTVIAIPNKEANTVARAVIEKIMLIY
GTNIKKFRTDMGTEYKNEIFKNISEILKIEHKFSTPYHPQTIGALERNHRCLNEYLRIFTNEHKDDWDDWINYYSFAYNT
TPNLDHGYTPFELVFGRNERITPNVKDTYSPLYNYDDYSKEFKYRLKIAHNRTRKHIEQVKFKLLKEQQNINQVNFEIGD
QIALTNENRTKLDPVYKGPYKVKEINGPNMIIENTEGVVQKIHKNRAIKL
>Gypsy7_Dpse_gag#LTR/Gypsy 2407-3876  [Drosophila pseudoobscura]
MGLDRSDDEGASASAICCRLCKVTMAPEDVYRTPCQHEFHKTCMRTYLKTQTTCPVCNAVCSAPTAGQPPLVPGKTRQQT
KSVLAGGSKQSQAGSEGQASISSQASTSNQAANSNQVSREITAAIRGMQNELLIHLTEKMSQRISTTVEARLASNAQIPQ
PSRGSLNMNASLDQLLEIPEGNQGAVYTPPLRTSLSRSAASDLAQRPDKVGHIMNNWKLRFSGASDSISVDSFIYRVEAL
THQTLEGNFMLLCSNANTLFEGKASDFYWRYHKTAGSVRWMDLCEALRKQFRDSRTDVDIRQMIRDRKQREKETFEVFFD
AIQKLTDRLEQPLSHKTLVEIVRRNLRLEIQHEILNQKIDSIEALRDICRRRECFMEEVRRTHGYQKPAPFRKQISELVD
EALGEDAEEFSESEFGEEIAALSLVCWNCRKEGHRYHDCVAKRKIFCFGCGAPNTYKPSCKKCQKNTKEKTAESRRLTSV
PQRGSAKQD
>Gypsy3_VC_gag#LTR/Gypsy 38-1303 [Volvox carteri]
MLLRPFLAFYRRSALPTVLQTSSSPVSSPRMNTASADPAVNAVTSPMAALALAPAPTVASLDQPSGSQPRAVPIPTAVDP
VPLPSPVNGDATMSDSQPGTVPRRLRPLEPPQPDRRRLVSADAAAKVQLSLPDYLSFLVDDLVGYLDLAGYTLSDSAATN
WVVLSVGPASLVTDLRKSLSALTPPVIPSASWLLNWFTEAVVLSSGASSYNALCRMFNAKPARSVEQVLQHLHDIRRELP
AATPEELIVYQLVRLLPDNLRDRLMYDRTVEIRRPWTSVDCFIRVLKTYAEELKSSASPSSGSSRQGASGSGAGASGSGP
RSTRSISAGRQRPDSDAKRPRLSASMPDIVPLADRFRQPTGRAKSIWFRGLTMQQAQNLRNKNQCLLCRGENHFAQDCER
AQSMFPKDFFFFERKPSMSKP
>Gypsy3_TP_gag#LTR/Gypsy 421-1527 [Thalassiosira]
MVLDDMFKKKNLLQQWNVNNAEAMRIIELGETPENESALLDLRANKAAAINEAFNLVDRTLDGAAKETWRECKQRACDKE
WKDAQDAVQPARGKTWESLAIARRFFSLTVMVKDAAEQQKNYHENYVKQPRGMKVRDFVTRNHHLNAYYPYLLCMADTDG
APDDMPREDTKLTEMRLSQVVLRAQTQQVQDGWYAIHGSKIPTDVNQLRDELDPINVQVQRRLKQDQLNRKNQDSVHGSS
SDKKNGTARFMSGGEGKKTDTGRIPRKPKGNGNKGDEQKRHRNLCAQFGGNHSTHNTSVCRRWTKEGKQQAGWKQQRPNG
NGKRDFAASLEKQEKEIHALKKLLKKKHKKRKRAYQYASDSSSDEESK
>Gypsy5-NVi_pol#LTR/Gypsy 3029-7681 via tfasty with TED_pol, 2 frameshifts and 3 stopcodons.  [Nasonia vitripennis]
MPSKKVGKLQGSSEHRRNSEEPKPRAASEGEFARFIGASTNINKNAGIPYIELGDKNKTFNIKFMIDTGAQSNIIKISSV
PNTVEVDTTTNFNLKGISDKPVESLGVIEMKVIGSSTRFFVVDDDFQIPYNGILGCEFLYKNYCKVNFDSKTLEVNGNSI
KFKQDNEINKLNKFVNYEVSNADIKLPFIDVLNSPTQEITQFLLDTGAEYSLIKKTLVPDYCKIDNEDKMFLRGIDGEII
KTEGSTIIDIFGIEHRIQVVPDDIPIPAEGVIGVDYLSKHDTTLNFKTKSLRVHDKYSPFKDRKFINLTINNKMPINEED
FDLESEEENVVDSMYNNYSVHDEKNKYYSNEFSNMGQIYSFCVSKEETFNELEIKQNADILESRLCNIFNALREEHGIEP
VEQPSIHPEILDARADEVMGILRLDGLTEEEVEQIDALIRKHADRIQLQGEDLEATNVLTHRINTTDDIPIYVRQYRLPH
SLKEEIETQIKELLRKRIIQHSNSAYNSSIWVVPKKPDSTGKIRWRIVLDFRELNEKTVPDKYPIPNIADIFDQVGGAKY
FTILDCVSGFHQIMLDPKDRHKTAFSTPLGHFEYLRMPFGLKNAATEYQRLMNIVLGDLIGKGVFVYIDDIVIYAKNLEE
HNRLVNEVMNRLRKANLKLQPDKCEFLRREVVYLGHRLSEEGIQPDLGKIEAVSKFPQPIDVKGIRQFLGLAGYYRRFIK
DFAKIAKPxTKLLEKETEFDWNTECEESFVKLKEILCNAPLLQYPDFTKPFLITTDASGYALGGILSQGTIGKDRPIAYT
SRVLRGAELQYDVYEKEALAMIHSVKTFRPYVFGRRFTIITDHKPLLWFKSADLNTRVQKWRFKLSEYDYTIEYKPGKQN
CNADALSRNPVELNVVTRARAKINKDLTEQDKNEVTKIRKPNVKRLVKSKNRKVTKKINQGPLKDRYPKRNRNKINYEES
EESDGDIEAEVENLPKLNKIKPKPLKxANDKDEDSLSSSSDEDIFNDNNDNLDNKEILNNNNDDILNNDNSDDEVETKSQ
DEVHSSKIVYSKELIQYRKSNVAYFIDSAGKPCDFGATELIKFKKNRSKYNIRTKVKSNKRSNNKYYFPMCIKNEKPESI
SQIKINIETVLIELKENLEKLNQKDCSFAKSKEIEKLEWNEILNLISKVFEDSNIKIIICKGTLKYVPVEKRDLIFNELH
TSAIGGHRGVSKTYKRIKENYYWENLKEDIQKRIQMCLDCQLKKLVRLNTKQPMIITDTPGTTFVKIAMDKxDLYRITKN
GNEYILTLQDQLSKFCIAIPIKDTYAATIADVFVKKVICIFGAPRVVLTDQGSNFLSKLMTRVAKRFKIKKVRTTAFHPQ
SNGSLERSHHALSEFLKQYADGDDDWDEWVDVATLNYNTGIHEGTKHTPFEVVFGRLARIPSSEPLREGDVCPTYKGYII
DLVSRLHEIRKLVHDNLVDAKIKSKKYYDNHINPKNFNVGDFVFLKSGHKPKKLKNHYSGPYRIMEILNKNNVRIKTEKG
DKIVHINRLRIFKIKIQAKRKKPLLHRDSD
>Gypsy5_Dya_gag#LTR/Gypsy 464-2005  [Drosophila yakuba]
MAAKHSAGISSEVSQGVENSCAVCKEILAPTVLSATTSCRHKFHKKCIINHLKSTQTCPVCKADCNESNLSHSNNTLFAE
LDAATAGTSGVSECQDNNDIFPLRRNTRSGRIRGTPSRRGVSTRNTYRGNLDRILTEPPTNSSMALSTHPELMNFIQFTV
SQQQAQLMDNLTSYLGKTIETSIKSHLDNFQLPQPTYTNSTPDNIQPNTDLSRNVSNQNRYSHNLDNNVETRGVNRSNAS
SYVSPEKVSGIIQKWGLKFDGSKTSIRIDEFIYRICSLTKQNLGNDFGLLCDHLYLLFAGKASDWYWKFHRNSPNFDWNT
FCGEFRKRFEDIETDYDIWEGIRKRKQGENETFEDFQETMERLIDRLQNGVSEAQLVELLVRNSKPSLHHELLHLKIPNR
AQLRYEVRRHEQFYNNLRTFKPKPYRSCVAELTTEEEETGLVRVDEEVNQIQRRNTPTCWNCDKQGHRFDDCMAKRIIFC
YGCGLKEKYKPTCPNCNPGNRQKDVSLSNKMHP
>Gypsy5_DR#LTR/Gypsy 137-4212 [Danio]
MQQLRHPNPAVTPPATMTASQPTHVSNAPATVSPRLAFPEKFDGSPSRCKGFLLQCKLFVNQQPALYPTDSSRVAFVCNL
LTGKALEWATAIWKEEECNYPTFETFLKQFREVFEHPADGRSPGEQLLSLTQGRNTAAEYALSFRTLAAQTNWVEDTLKT
LFRRGLSTNLQSELACRDEGKKLNELIELTIRLDHLIRSRRNPRTQLHVSSDTPPDEPMQLGFTRLTHEERMHRLQNHLC
LYCGQSGHRKSTCSVRPQTPVQSVSPSHVPALFSVLIPVIIKFDKRMINTTALVDSGSAGNFISKKFALCHELSLSSYDS
CLAVEALDGRPVGEGRIRMITNKLQLQVGVLHIEEMQFYIIDSVNHPLVLGLPWLRRHDPHISWRDGQILQWSESCMKQC
IQPIHKIPLRTTNVLPELVDELIPIEYHSSSSPPTGRIFPLSQPEHKAMSEYIDEELAKGFIRPSTSPASAGFFFVKKKD
GSLRPCIDYRGLNKITVKFRYPLPLVPPALEQLRKARYYTKLDLRSAYNLVRIRAGDEWKTAFSTTRGHYEYTVMPFGLS
NCPSVFQSFMNDVFRDMLDRWFIIYIDDILIYSNTMKEHVEHVRMVLQRMIQHRLYAKLEKCEFHQTQIAFLGYVISAEG
ITMDDTKVQAVQRWPLPQNLKELQRFLGFANFYRRFIRGFSSIAAPLTAMTKRNSHKLSWSSEARQAFSDLKTQFTTAPI
LRHPNPDLPFIVEVDASNTGVGAVLSQRQGQPSKMYPCAFFSRKLTSAERNYDVGNRELLAMKLALEEWRHWLEGASQQF
TILTDHKNLEYLRSAKRLNPRQARWALFFTRFDFIVTYRPGSKNSKADALSRLSEDKTPISDETIIPTNLLVAPVQWDIL
TEIQEANRENNPPVDCPNHLIFVPNNIRTRLLTHIHDTPSSGHPGITATLELVKARFWWPSLTKDVINYVQKCKICQSTK
ASHQTPAGLLQPLPVPQRPWSHIAVDFITDLPVSQNNTVILTVVDRFSKACRLIPLPKLPSAFETAEALCNHVFRMFGLP
DDIVSDRGSQFTSRVWSALCKNLNINVSLTSGYHPQSNGQTERMNQEVIRFLRSYCHQQQHDWSRYLMWAEYAQNSLIKP
ATGITPFKCILGYQPPLFPWSGEPTELPAVTDWLQRSEDVWNQAHRHLMRAVRRREIQANRHRRQGPTYQPGQWVWLSTR
DLRLRLPCRKLSPRYVGPFKIVRQITPVSFRLALPNHYRISPTFHMSLLKPAGGPREEAAEEESETRTPPPVMIEGEEAY
LVREVLDSRRRGGALQYLVDWEGYGPEERSWVNARDILDPTLTEEFHQRFPEKPAPRQRGRPRRQVPSRFRSRSQEGG
>Gypsy10_VC_gag#LTR/Gypsy 650-1531 Gypsy15_VC_gag almost identical [Volvox carteri]
MNRPDVPMVIPETPTTDADHRAAAARALAVEAAAAAAAVVTAEPEPLPAVRPISSADLPRVSLPTPVLQLDAKLDVKQTA
ARVKVFIRNASLFFEIVPWGRDHRSCCLFLSQALRGVAKTWYDEWSLSQRELTAQLVLDNLRTRFAPQVISVEQEARSRL
SDKSFAMHAGESVPAYLSRLEAVFQDIPTITPSERMFWYFEGLSSSLQPHCATDVYGKPFASYDALVQHALGQEVRALSE
RKVRPALRSNSVALQEFDGDQPPFKRARVDSGPRPAAAVAGTSWQPGRGSVPG
>Gypsy20-PTR#LTR/Gypsy 26-4438 via tfasty with Gypsy1GM, 1 stopcodon. [Populus trichocarpa]
MDTRGKNNAEFRAEITEALGRHDANFDELNQNFNRVNNALQGVMAELQAMRIAQTHRSSEREVNPFAGGSSSHDRSSSSH
TSTFDRGHSNLKLNFPTYAGEGEDPTGWIFKAEQYFEFQNVDAPRQVQLASFHLTSVELQWYRWYTKGKGQLRWHEFVQA
LLHRFGPTDYDDPSEALSRLKQVTTVNAYQEAFEKLSHKVDELPETFLVGCFIAGLKDEIRLDVRVKQPKTLSECISVAH
LIEERNQFQRRTNNTFRTTTTSGQVRQQTSTMGLLGPAPSQRPPQVSHFPGGPARRLTGQEARERREKGLCFYCDEKYVQ
GHRCSRPQLFMMVDVQSQGDEDEVDMDIEPDEEALPEISFHALVGTSHPRTFRVTGRIGHKELIVLIDGGSTHNFIDQSV
VIKLGLHVVKGKTFKVTVGNKEVIECTGRCFGLSLSLQGITIRADFFVLPVAACQVVLGVQWLETLGPIKTDYKKLRMSF
KQSGRTHVLHGITGSELALLSEKELLHLSGMGFFVHMVSEVQSSQDTPLPPDLEQILSQYSHIFDEPTNLPPTRSHDHRI
PLLPNQPPVNTRPYRYPHYQKNEIEKLVKEFLQSGIIRPSRSPFSSPVLLIKKSDGSWRFCVDYRALNEITVKDKFPIPV
IDELLDELHGAKYFSKLDLRSGYHQIRVHQEDIQKTAFRTHDGHYEFLVMPFGLTNAPASFQSLMNDIFRPHLRRFILVF
FYDILVYSRSWEDHLLHVKQVLGILADHQLFVKLSKCQFGVLSVGYLGHLISSEGVAVDPEKIHAVQNWPVPTSPKGVRG
FLGLAGYYRKFVRGFGVIAAPLTKLLTKDGFCWTEECELAFDKLKEALVSPPVLRLPNFSQPFVVECDACGDGLGAILSQ
DNQPIAYYSEALKGKSKLLSTYDKEMLAVVKAVRKWRPYLLGRPFVIKTDHRSLKYLLEQRLTTPSQARWLPKIMGFDYT
IQYRQGKENQGADALSRVAAFQFQALTVPIADWWEILQQEVLNHPYYNSLLTNQPLNCVQRDGVWMQNGRILLSPNSTLL
PAVLADGHSSPSGGHFGYLKTLTRISASFVWPGIRTSVKSFIRDCEVCQRCKHETLRPAGLLQPLPIPQRIWTDISMDFV
EGLPLSQGYNVIMVVVDRLSKYAHFVPLKHPYTAVSVAKKFLNNVVKLHGMPLSIVSDRDKVFLSTFWKSLFKLQGTKLx
YSSSYHPQSDGQTEVVNQTLEQYLRCFSSDQPKGWVEWLAWAEYGYNTAVHSATKMSPFEAVYGVPPPNMTSYIPGTTKV
QAVDNLLQTREVIMRDLRRNLLEAQTRMKSRADLHRREVTYDVGDYVFLKLQPYRQKSVAFRSSLKLSPRFFGPFRILAR
VGAVAYKLDLPAGAHIHDVFHVSLLKKKWGPVVDDTVITLPPVSTDDVILPEPELILDRRVVQKGKYRPKTEVLVQWKGA
LPEDASWENLWRFAKTYPQFNLEDKVLRRGM
>Gypsy19_AG#LTR/Gypsy 97-4089 [Anopheles genus]
MIEEKPTSSGTKQNIAQSEQRTTMAKFDMEPFNKGLMQWARWVKRFEGAMSVFEVKSNNKKAMLLHYMGVDSYNLLCDHI
SPEEPEDKTYEQIVKCLDELFDPKPLEMVELWKFRQRLQTEGETVTEFITALQKVAANCDFGQYLTKALRNQLVFGVRNP
RIRNRLIEERNLTLEKAKQIALAMEAAGDGAEVLNSRSAEVLNSRGAEVKEVNIVSNTTKKNVECYRCGESHFAYVCKHK
RTVCKKCGKIGHLQRVCRTNNRSKSVRLIDEQHQDSEENEEVNSILINNLYQNANHTAKIYITLKVNNTKIQFEVDSGSP
FSIISMNDKQRWFKDIPIRESDIKLQSYCGGSIKLFGTISVIVENAKTKLTLFVVESKRGPIVGRTWMRDLKFDWNELLS
KGNSYVNQIVTHSNTNQEVIKKLKEEFEVVFRKSLGEISNIQASLILKENALPIFLKNRTIPFALKESVEKEINDLVNQG
ILIKVNRSEWATPIVPVKKSGNRVRLCGDYKLTVNKNLVIDEFPLPTIEELFANMAGGEKFSKIDLAQAYLQMTVKPEHQ
EFLTLNTHMGLFRPTRLMYGVASAPAIFQREITQILQGIPGVSVFLDDVKITAPDDKTHVERLRTVLKRFQDHNMRVNDS
KCNFLADCIEYCGYRIDKYGIHKMKEKITAIQLMPKPRNKDEVRAFVGLVNYYARFIPNLSEKIYPINNLLKNEIPFEWH
EGCQDAFEWIKKEMQSERILVHYDPSLPIALAVDASPYGVGAVLSHIYPDGKEYPIQYASQTLSPTQQRYTQVDKEAYAI
IFGVKKFYRYLYGRKFILITDNKPVSQILSPQKGLPTLSATRMQHYAVFLESFNFEIRYRPSKEHGNADGMSRLPIRDIQ
LEDTEEPDEIELNQIENLPVSVEELSKETSKDINVQLLIDGLNSGRTVSINDRFGIDQTQFSLQKGCLMRGARVYVPPQL
RNRVLDELHEGHFGISRMKSLARSYCWWKNMDNDIERLSKNCVSCAKVRKDPPKVPTHVWKRPQSVFERVHADYAGPFMG
IYFLILVDAYSKWPEVKITPDMNTDTTIDKMREIFATFGLPSILVTDRGTQFMSEKFQTFLKSNGITHKTGAPYHPATNG
QAERYVQTIKDKIKTMQCHKSEIPKKLQNILLAYRKTTHPSTGESPSRLMLNRQIRSRLDVMVPKIEKKSNPEVVHKTTR
SFAVNERVAARDFLSQTEKWKFGTITKKLGKLHYEIRLDDGRMWKRHINQMRSGPEEISIHHSSNQNIEPWIDESVYLPD
RMEEFQLPHDSETEMVRSDNINEDLACGEESQTQVRRSTRTRQPPIRYRD
>Gypsy21_AG#LTR/Gypsy 68-4372 [Anopheles genus]
MSQEDLRNAIVQLTNLVAKQQQQIENLANRTFSTAASGSEKTIESLANGIQDFLYDPDAGVFFDAWYARYEDVFIQDGHS
LDDAARVRLLLRKLSTPLHDKYVNTILPKHPRDFSLDETVTKLKKLFGRQKSVFHSRYQCLQYAKSDADDFTSYAAMVNK
HCEAFQLSKLTSDQFKALRFVCGLQSPRDADIRARLISKLEADETAVVEQGEAASKVTLENLVEECHRVANLKHDSQMVE
NKEACSVNAISRNQNHSSSKKTNKVPKTPCWKCGELHYVRECPFASHMCTRCKQQGHKEGYCSSSKPAASKPFKQWKPKE
SMKTNGIYTVRNVGRKRKFVSVELNGVAVKLQHDSASDITIISNETWASIGRPPTQPTDESAVTASGSDLNLLAEFQADI
TINNVTKTGRIFISDSADLNVLGIDTMDLFDLWSVPINSLVNVVHQNSDQYVDRLKHQFPEVFRSTLGRCTKAQVKLYLK
PDARPCYCPKRPVAYAALPKVDAELERLETNGIISPVQFSDWAAPIVVVRKSDNVSVRVCGDYSTGLNNALECDRHPLPH
PDDLFAELAGARYFTHLDLSDAYLQVEVEVESRKLLTVNTHRGLFQYNRLPPGVKSAPGAFQRIIDSMVAGISGVKPYLD
DIFIAGRTKEEHDRILYAVLERVREYGFHLRLEKCRFALPQIGFLGLIVDKDGVRPDPSKTEAIAKMPPPKDVKQLRSYL
GAINYYGRFVPQMKHLRAPLDDLLKKDARWNWTKECQKSFEQFKTILLSDLLLTHYDPSKEIIVAADASKYGLGAVVMHR
FPTGEVKAIAHASRSLTAAEMNYGQVEKEALALIFAVTRFHKMLYGRHFTLETDHQPLLKVFGSKKGIPVYTANRLQRWA
LTLLLYDFEIKHISTMNFGYADFLSRLMSSQRRPDEDYVIAAVYVESEAKAILEDSINNLPVTHQMIVAETRKDAVLQQV
ISYINEGWPASVKLITDPDVKKFFVRREGLQVVDNCVMFGDRIVVPSKFRKRIVRQLHRGHPGMERMKSLARSYIYWPNV
DDDVAQFVRQCDACAEAAKAPTKATLESWPLPDRPWQRVHVDFAGPIDGHHYFVIVDAYSKWPEIFRTRSITTTTTLDLL
RETFSRYGNPDTLVSDNGTQFTSGQFQQFCSENGINHIRTAPYHPQSNGQAERFVDSLKRGLKKLGKGESPTLQHLQTFL
SVYRSTPNRNTPKGTSPAEAFLKRTMRTTLDLLRKPYPPTAAVNHKQNEQFNKRHGAVKRSFVENDLVYVEQHVHNKKSW
VPGRVIEPKGSVNYVVSLDLHGRQKLVRSHVNQMRSRYGSETPGQEQQQLPWEVLLEEVGTTAAVKPAGNHVAINLNSTV
PADVPVFENPPTDFNPPTTNEQPSASASESIASESVIAESIASESVASESIGCLLRRSVRTPRIPRWLSSYDLY
>Gypsy24-PTR#LTR/Gypsy 37-4611 Gypsy-9_PTri product near-identical. [Populus trichocarpa]
MTHETRSQDIKKLEGAIATTNKEQGLWNDKMAKLLEQQGQQQLSSDTRLLRLEELISGISLQQNTLLQKLQLPTGATSSN
QEYHRSSQEGMLYKNDWQQSGSYKFHKPRRDFPSFEGEDVHKWLYKCNQFFEMEEVPETEKLKLASYYLDGVALYWHQNF
MRSKVGQLVTWKEYVEGLCGRFGGHKEPLEELKDLKQEGDLETYIRNFDILWNRAEIDERYALIFFLGGLETEIKNLVKM
FEPKSLNQAYNLSRLQENTNLYKSSHNQPIKQPTSPFSNNQTSNQQQSPYKPNKFLESTSQHSTQPGLLPTPQTHNGIQP
MRRPTRNVRSTEMEERRVKGLCFWCDDKFTPGHKCRTRKLYSICLVGDDEGETDNMVESGQESGVLIDTDPHISMNALEG
VPGCYTLKVTGRVDKLPIFILIDSGSTHNFMNTWVASQLQCVLSPINPVTVKAANGGKMLCSSICRGFRWKMQGIHCEAD
VFVMELEACDMVLGVQWLATLGDIVCNYKSMWMSFEWQGQQTTLRGEEPVKLQSVQFGQMSGLLSNRTSIAGINLCSLRM
IQDTPDTATSTSAKNLNKEEKAALQQLLHLYQDVFIPLVGLPPSRSHDHTIPLKEGAQPVNLRPYRYSSLQKDTVEGLIS
EMLEAGTVQPSHSPFASPVVLVKKKDLSWRLCIDYRALNRLTIKNKFPIPLIEELLEELTGASVFSKIDLRSGYHQIRMN
SGDIHKTAFRTHNGHYEFLVMPFGLTNAPATFQSLMNEVFRAYLRKFVLVFFDDILIYSKSYTQHQAHLQTVFELLRSHQ
LVAKESKCVFCDDRVEYLGHIISKEGVATDPEKLQAIKNWPLPQSIKQLRGFLGLTGYYRKFIRSYGIICRPLTRLLKKD
AVGWDQEATVAFEALKKEMMNPPVLALPDLSKIFIVETDASGAGIGAVLMQEGHPIAFISKALGPRQQSLSTYEREMLAI
IMAVHKWKQYLWGRSFKIRTDHVSLKYLLDQKLSFPSQHLWLTKLLGFDYEIEFRSGRENIAADALSRISSNELHTLTLS
TIEAPVLDNIKQSWQEDNKIQAIIQDLIKDPATHPHYKWSNNYLFRKGKLVVGHNPTLQHQLISMYHDTSLGGHSGSTVT
TARLASMFYWRKQQKQVRQYVRECPTCQRCKTENVASPGLLQPLPVPTAPFTDISMDFITNLPKSEGKEVIFVVVDRFSK
YAHFMALSHPYSATTVAKTFMNSVYKLHGMPATIVSDRDTIFLSKFWKELFALQGVNLHYSTAYHPQSDGQTEVVNRCIE
GYLRCMTGDNPSQWCKWLALCEWWYNTNFHTATKTTPYNILYGFNPPIHIPYFPKDSALEAVDHYLTTREQLLQTVKLNL
TKAHNRMRQLANKKRSDRVLEVGDSVYLKLQTYKQRSILHPHHKLAAKYYGPYTVIKKIGEVAYKLNLPSSSTIHPVFHV
SLLKRSRGNRMVHHSLPDSPHEPLLQPQVIMDRRMVKRGTQAATQVLIHWKGLSPAEATWEFIDDVQLRFPTFNLEDKVT
LKDGD
>Gypsy23-PTR#LTR/Gypsy 38-4573 [Populus trichocarpa]
MARDDIGSSRSTDDDQRIRAIATGVVTAAINDIRPLFDGVPLLQAQLEEVLQRLEALSPNGNRIDDQRRGRADEITHGST
SLTRNPENIPQYQNTRSLPVMSSTNCQVIETEDRAPRRTQGDRDYKLNVEMPTFKGTQNVDEFFSWIDEVETGFGVMDCS
EDRKLKVVANKLRGSAAAYWKYLKNKRVLDGKPPIATWEKMKSKFMSKFLPPDYEQRLYVQLQNCKQGNRTVEEYIDEFI
RLNSRNLLPDNENMQIARFRGGLKQDIQDQMKMLNTFTLGQAFDLARKAEEPIRAPSVRPRFTNQQYQAGPSRVTPTTEP
SNGTVATENRPRRAAPQQAPNPYARPMPSLCYRCHQSGHRSNQCPQRPAVNFVEGDYEVEGDDDHNTEVVDGIEECEEDE
FIGMVMRQPCDIQKKKLAASNQHSLVENLKAEKGGDEKFNYIVQRVFLTPKKGPEISTRHQVFRTNAIVNGVIAKVVIDT
GSSENLVSKELVRRLKLTTEKHPQPYGLRWIRKVEGAADVVNEVCRVPLSIGKNYQDEIVCDVVVMDACQILLGRPWQYD
VDIGFKGKTNTYEFWWKGKHIFLKPPILKTGARQEEGESFLTIATKHVAEECQACALLAQEEDTTEETIPEKVLPLVTEF
SDLAPTELPMGLPPMRDIQHHIDLIPGASLPNLAHYRMSPQQHKILQDQVDDLLCKGYIQESKSPCAVPALLVPKKDGTW
RMCIDSRAINRITIRYRHPIPTIQDMIDQLGGAKVFSKIDLRSGYHQIRIRPGDEWKTAFKTREGLYEWTVMPFGLSNAP
STFMRLMNQVLRPFSCKFVVVYFDDILIYSPDEETHLRHLREVLIVLRKNHLYVNKKKCNFLQDRLVFLGFVVGKDGVQV
DETKVKAIREWPTPSTVADVRNFHGLATFYRRFIRNFSSLAAPLTECKKKGGFRWEEEQETSFAILKEKLSTTPVVALPD
FDKLFEVDCDASGKGIGAVLSQEGRPVEFFSEKLSAARLRWTTYEKEFYAVFRALMHWQHYLIQKEFVLYSDHQALKFIN
NQHHMNNMHARWITFMQKFTFSLKHKAGLMNKVADALSRRTTLLVTVEIEITGFETLKEQYINDEDFKEVWNKCSTHQNV
SDFLIHGGFLFKANKLCIPKGSLREKIIRELHGGGLGGHLGRDKTITLITDRYYWPQLKRDVGKIVQHCRVCQEAKGQTQ
NTGLYTPLPIPKTIWEDLSMDFVLGLPRTQRGKDSIMVVVDRFSKMAHFVACKKTADASHVADLFFREVVRLHGVPKTIT
SDRDVKFVSHFWRTLWKKFDTKLQFSSAFHPQTDGQTEVVNRTLGNMLRCISGEKPKRWDLDLAQAEFAYNSMTNRSTGK
PPFEVVYTQQPKHALDLVTLPIQPKVSRAGENLAERVQQLHSEVRASLETANAAYKSAADQHRRKKEFTEGDLVMAYLRK
NRLPGTRTKLQQRKYGPFRVAKKINDNAYTLQLPDDWNISKTFNVADLSEYHEDVPLYADNSGRVCFQEEEN
>Gypsy19-PTR#LTR/Gypsy 28-4388 via tfasty with Gypsy1GM, 1 frameshift and 2 stopcodons.[Populus trichocarpa]
MGTNKERIEQLEDGLHRMEQGMADRLQHLEDTLNRLSDVLLANQEPSNQGNQQREGQDGGRLIVSSKITRLEFPRFSGDD
PTEWFNRVNQFFAFQNNPELQKVALASYHLEADANQWWQWVHRLNEEEGRVLSWTNFEDELWARFGPSECEDFDEALSRI
RQGGSLRYYQREFERLGNRVRGWTQRALVGTFMSGLKTEISDGIRMFKPQTLKEAISLARMKDDQLSRQRRFSRPAPSPP
MRSTISPPSFNRDAPTVPATPIRRLTWEEMQRRRAQNLCFNCNDQFTAGHKCREPRILMLEGYDGTNTLLCDNEGEDQPL
QEIVETITEPEITLYALTRWAAPKTMCITTRIGSSDVIALIDNGSTHNFISERLANALRIPVVPTASFTVRVANGEKLKC
QGRFEEVGVDLQGTHFSLTLYSLPLTGLDLVLGIQWLEMLGSVVCNWKQLTMEFQWKNQLRQLRGMGDEGIQIASITKLT
KAIHQNPAIFAICLQISTAEPHIxTTHPDMEAILHEFADILKEPAGLPPTRGVDHCISLKDGTKPINVRPYRYAYYQKEE
IEKQVQEMLNSSLIKPSTSPFSSPVLLVKKKDGTWRFCIDYRALNATTVKDRFPIPTVDDMLDELYGASYFTKLDLQAGY
HQVRVNPMDIPKTAFRTHNGHYEYLVMPFGLCNALSTFQAIMNSIFQPHLQKFILVFFDDILVYSPTWDMHLMHVRQTFE
ILQQHQFFVKASKCVFGQQELEYLGHIITNHGVKIDENKISAMVAWPRPTNISELRGFLGLTGYYRKFVKNYSIVARALN
NLLKKGQFGWNEEVETAFLTLKQAMTTTPTLAMPNFKDVLTVEVDASGDGIGAILTQQGKPIAFMSKALGVAKKSWSTYP
KEMLAILEAIRLWRPYLLGRKFYIQTDQRSLNFLLEQRITTPEQQKWVAKLLGYDYEITCRPGRENVAADALSRKQGSHV
LQHLLVSQVTLWEEIKQAVKTDLYIQSMSQIAADQLHSHFVWRNGLLRYKERVIIPADPTLRAKLLHEMHDTKVGGHSGV
LCTYKKLGQQFYWPGMRKSVQEYIKNCVVCQKTKLDTLAPVGLLQPLPIPxQVWEDITLDFIERLPASQGQDTIMVVVDR
LSKSANFLPLKHPFTAKSVAEKFVEGVIKLHGMPRSIVSDRDPFFASHFWQEFFKMSGIKLQLSSAYHPQTDGQTEVVNR
CIEQYLRCFVHQWPKKWSLYLPWAENWYNTTYHISTGMTPFQALYGRLQPTIPSYNEGLLPVHKVDQQLQDRDELLQQLK
INLARSINRMKQITDKKRRDVSFDVGDLVLLKLHPYRQHTVFKREYQKLASRFYGPYEILEKIGPVAYKLRLPAESRIHP
IFHVSLLKQYNTNSEVHNHSIEIPSFNADGEVLLIPQAMLDHRWIKQGAQIVEDSLVHWKYLTVEEATWVSTKQLLELFP
DVNLGDKVARDGGG
>Gypsy12_AG_pol#LTR/Gypsy 2000-5701 [Anopheles genus]
FFRPKGINSDSRPIYSLDLNGVDYIKIKLSFANTETSILLVDTGASVSLFKSSKLKKNHSPIRSNSISLTGISNTPIYSK
GITTCTIFFNNLELEHDFVLVPDEFNIGADGILGRDFYKLYRCSINYELLLLTFTCQGEEIQHNIEEDDGKGFILPIRSE
VVRRIYLPNITEDTIVFAQEIQPGVFCGSTIISKDNQVVKFINTKQRNIYITHAEFKPITEPLSNYEAKQVNNKAGEVNN
DRLQKLLQKIKIDKIPTSEIYNLRKIVTEYNDIFCVEDDPITTNNFYPQKIELKDNIPTYIPNYKQIYSQTDEIQNQVDK
MLKNDIIEHSVSPYNSPILLVPKKSTDGNKKWRLVVDFRQLNKKVIPDKFPLPRIDSILDQLGRAKYFSTLDLMSGFHQI
PLENDSRKFTAFSTGSGHYQFKRMPFGLNISPNSFQRMMAIAMAGLTPELAFVYIDDIIVTGCSARQHISNIVKVFDRLR
HYNLKLNPEKCSFFKTEVTYLGHKITDKGIYPDDSKFETIRNFPIPKNADEVRRFVAFCNYYRKFVHNFANTAKPLNNLI
KKKVKFIWTDECQNAFNSLKQSLLSPTVLKYPDFKKEFILTTDASDVACGAVLSQITDGEDHPIAYASKSFTPGEKNKPI
IEKELTAIHWAINYFKPYLYGRKFTVKTDHRPLVYLFGMKNPTSKLTRMRLDLEEFDFKIEFLAGKTNVVADALSRIVTD
SDELKASIPKNKTDLANPILLVNTRAMTRKNITADKKEKEKDKEETKVKYDQTNMYETDRPSETTKMLKMKSNIIENEEF
IELVIYNHNYYKALGKFKIPITSAKQSQTLEFVLHESCLIARKYHKNLAIASNDKLFEFYSMSTIKEIINKMITDVHVIV
YTQPKWIEEKEEQFQIMSNFHTTPVGGHLGQFKLYSKIKDKYKWKNMKADIIKYVKSCKACATNKILKHTKEETVVTTTP
SKPFNIITIDTVGPLPKTANNNRYAVTIQCELSKYIVIIPIQNKEANTIAKALVENFILTFGNFLEMRSDQGLEYNNEIL
TQISKILEIKQTFAAAYHPQTIGALERNHRSLNEYLRSYTNEHHDDWDQWTKFYEFVYNTSVHSITNLTPFELVFGRQAN
LPQELYKTKVDPVYNIEQYYNEMKFKLQKAHAIAKNKLIASKIQRQAKLNENLNKLNIRIGDYVYLTNENRKKLDPVYIG
PFTIVEITDTNCVIKHNQTGKITTVHKNRLKQF
>Gypsy11_Dpse_pol#LTR/Gypsy 2991-6350 Contains a insertion (AA 143-253) with respect to other pols. [Drosophila pseudoobscura]
MADIRLGDQQVKMPVLVMKDVLDDVLLGMDFLCGIDATLQCGGVPLRLQFKHSHDTRTQDIGSTARLDQPTNLSRDRAAQ
HQEPTRNDVPNEERVADPLGSMMVRWEKLARDDVPNETCVAVPSRNSRNSGEVSTPAGYQPGWTSALPGLDHRAMLKNPF
RVHEVQQRSKKRVRFEPGIGDNGPRRRRTRERTQGATVATVSISQLPDVLAPGFEPEDDEPLEPRITEWLQQELKQFDGL
SGVSPIAEHTIVMRDNKPIKQRYYPKNPAMQAVINKQVDELLKEGQIEPSKSPHSAPIVLVGKKTGDIRMCIDFRQLNAR
SIPDAYPLPRIQHILEQLRDARYISTLDLKSGYWQIPLAPTSRECTAFTVPGRGWFHWKVMPFGLHSAGATFQRALDSVI
GPDMEPHAFAYLDDIIVIGHTVEDHMRHLGTVLQRLRKANLRLNKDKCSFFKRRLKYLGHVISGNGIHTDPDKIAAVRNL
KPQAGVKELRRCIGMASWYRRFVPNFSEIVEPMTALLRKDRQWKWSEEQEKAFEELKIRLTEAPVLACPDFSEKFSLQTD
ASEQGLGAVLTQKIRDEERVIAYASRRLSKAEENYSVTEKECLAIVWSIRKLRCYLEGYRFDVITDHLALKWINSIDNPT
GRIARWALELQQYQFDIRYRRGKQNVVADALSRQPLELLHQALEEESQCKWIRKMLARIRQQPGRYEDYRSESGQLYRRL
HTVPEEEDSTPWKLCVAAEHRRRVLKECHDHPTAGHLGIRKTSTRVAQKYYWPGLFREVARYVRQCVVCQKYKVSQFKPA
GKMFTRQVDEPFSVLCADFVGPLPRSKHGNTVLLVFFDAFSKWVELVPLRKATTPHLERSFRERILSRFGTPRTFVCDNG
AQFTSRSFKGFCKRLGMELQHTAPYTPQQNPTERASRTIKTRVAQYIDGKQNTWDELLPEITLAINSSVSDSTRFSPAFL
IQGREPRLPGALYDEVTPGTGTSIADPETRARQMREVFEIAKTNCDKASEEQKRHYNLRRREWKPAIGSQVMLRRHTLSK
AAEGFASKLATKFEGPYRVTKFLSPNLVRLQVLNGRKQRSASLNDLKAFYPTIDEDDEKTDQIRTDSEDDPDRTNIQQS
>Gypsy13-PTR_pol#LTR/Gypsy 6095-9645 via tfasty with OGRE_PS_pol, 3 frameshifts and 4 stopcodons. [Populus trichocarpa]
MLTEQFCFNEIMHFLVSNVSSSFYPFTSHTYMSTPCTFRNPESSIDSQNHCTKNNWPNFDNMVAMGDEEWEEEDIKEFTR
LVENSEKSWEPASEKLEVINLGNEQEKKELKIGTLVTTEERNKLVSLLREYADVFTWTYADMPGLDTDIVVHKIPLIEGS
KPVKQKTRRMRPDMLLKVKAEIQKQWDARFLDVVQYPQWVANVVVVPKKDGKIWVCVDYRDLNKASPKDDVPLPHIDILV
DNAARNATYSFMDGFSGYNQIRMVEEDKEKTTFVTPWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHREVEVYVDDIL
AKSKKEEDHVQVLRRLFERLQKFQLKLNPAKCLFGVKTGKLLGFIVSDQGIEVDPDKAKAIQEMPAPKTxKEVRSFLGRL
NYIARFISQLTVTCELIFCLLRKKNPGVWDNYCQEAFDKIKRYLQNPPLLVPPTLGRPLILYLTVTETTMGCVLGQHDES
GRKEQAIYYLNKKFNDCESRYTTIERLCCALVWSAKRLRQYMLYYTTWLISKLDPLKYICEKLYLSSRIARWQVLLTEYD
IVFMTRKAVKGSVIADHLADHAMKNYEPLNFDLPDEDVIVIENRGGESDTWTLYFDGVVNVSGNGAGAVVISPENKQYPV
SARLLFECTNNTAEYEACIIGLEVALELKAKKLEVFGDSLLIIYQVKGEWQTKNEKLKLYQNYLLRLANEFEEIKFTHIS
RDKNQFADALTTLASMTQVDIRSKIQPIDIEVRSFQAHCCLIEESPDGKPWYNDIKFLQHREYPxGISKTDxKTLRRMTM
NFYLDGEILYKRSFDGTLLRCLNENEIEQTLKEVHEGICATHANGHTMAKxIQRSGYFWLIMERDCIDYVRKCHKCQIYG
DRINAAPTPMFNMISPWPFDMWGLDVIGPINPKASNGHRFILVAIDYFTKWVEANSYAHVTQKVVKRFIEKDLVCRYGLP
ARLVTDNAQNFNGKLIDKLCTKWKIKHLNSSPYRPKMNGAVEAANKNLKKIIQKMVVTYKDWHEMLSYALHAYRTIIRTF
TKATPYSLVYGMEAVMPLEVEIPSLRILKDAELDESDWARLRFEQLNLIDERRLAAVCHHQLYQSRIAKAYNKKVKPRVF
KEGDLVLKKISLASGEDQTKWAPNYEGPYVVKKALSGGALILTNMDGNDLPRPVNLDVVKKYYA
>Gypsy16_VC_pol#LTR/Gypsy 2359-6510 [Volvox carteri]
EVAQCEGSGGNSAAFVPQLRVEDRAGCSGAKWDLMFSRAEFLRIQAMTGREFSFDAACNDDGSNSHCSAFASPRKSFFKH
NVAGEHVWVNAPFEQARHWIKHYKRCKAGSPFNTSAVFILPKWEQFRQSTQGMTLLHEYPKGTQLFTSPAGEDTREYVST
TRSIQVWYDPPEQPCLRVAEPNKSITFKCKIGAIDAIALIDTGASHTIADVSVVNTANIQNCAAMDVEIADGKKVPIQGK
TEVILQVQKYFGVVQALVMTNLLPGIQLILGMDWLQANGALLDIPGLSCLLRTPANGSRKPIHLLADASRGRQGAGGEEN
AGVRTMQTICAALAAKTTPDLMSASAARRAIKKNTPGMLVVVREVPDPTGSNPVALSVNSELPPPPPLRCFPDNPSLCST
FASPHQPNTSTDDSDMKHTAVVPDSDLKALLNEYSDVFEPISGLPKDRGIGHTIDLEPDARPVFSRMYRLSPQEVEEVKR
QVEDLLNKGLIQPSTSPWGSPILFAAKKDGGLRMCIDYRQLNKATIKNRYPIPNPEDLFDALHGATIFSSIDLQSGYHQI
RISEQDRQKTAFRTPFGHYEFLVLSMGLANAPATFQAVMNSVFRPYIGKFVLVYLDDIIIFSKSPQEHVEHLRTVLETLR
KEKLQAKLSKCEFNRQELKFLGMVVGKDGLKVDDSKVKVVRDWPTPTDVSGLRGFLGLANYFRKFIQGYSTLVAPLTKLT
GSKEPWVWGPAQQESFAGVKFALTNAPTLRFPDVTKPFEVIADASLHGTGGVLLQEGRPVAYTSAKFTQAEKGYTTTEQE
LLGVITALKQWRCYLEGPPITLITDHNPNTFLDSQKSLAKLSRRQVRWLEYLARFHYTWEYRPGRINVADPLSRLHAHTF
VAHTQARYTVSSELPVQILQSYEQDAYFEDMRSLGRDGVVRDADGYYRRNGCIVVPKGPDHLRSRIMRELHDCPYAGHRG
VERTTELIKREFWWPGITADVERFVKACRVCQHNKPLQRKPAGLLQPLPIPRDVWASVSMDFITHLPRTKAGHDAIVTFV
DRLSKMCRVAPTTNDVTAEDLAQLYMDNVFRSHGFPEEIVSDRGPQFISKFWGELMRRSGTERRLSTAYHPQTDGQTERM
NRLLQEVLRNYVSPTQDDWDTKLSIVEFAINNSYQASIKATPFQLNYCRTPRLPNLLGMKEGTVPAATRYCSDIHEYVER
AKRFIQKAQDSYKKYADKARRDAEYTVGQKVLLSTKNIRLKQPGTPKFLPLWIGPFTVVKCIGSVAVKLSLPSEYRVHDV
FHISLLKPFIEGTGRTPAGPVAVLDDGAYWAVDKLLDHRDKSYGRGKSRREYLVSWEGYGPEHNSWEPETNITDAAIDEY
WALQESRTKQKPASEPKRKRTRK
>Gypsy13_VC_pol#LTR/Gypsy 1121-6369 (2 "introns" removed with genewise and Gypsy6_VC_pol) [Volvox carteri]
GVAPPRFVRRPDGNCLWSKYWQGLGRSVHESEVASIVTTVGREFTLDACASDCGLSAVCNAFSCTARPCLDTNVAGHTVW
MAPNAADLPAYVTQYRACKPLAPQSTAACILVPSGTEPSLLKGMKLVRRYPVGTSLFYVPDVQGSRALLPPITEVMEVWY
DGPDSTEEIPACMAFGKAVPHLAVKISGSTFIAMLDSGATHSFVSEALVRLLHLHVLPSTFTYVRLADGGMSPIVGQTML
KVRVGPVRLVVPALVMKGLPTSADLILGANILEQSRMRIDFDTRVVTLRKGTQEFRRTYSHGKEDPSKDQRPKHHVIMTM
QARAECLSINRTQAKNMMRKGAHVLLVRPRLTAGAVVRAAATRGSVTDPEIAALLERYQDIFADITEPPPERLVTHTIPL
VEGAQPVARPLYRLTPNELEEVKRQVEDLLRKGMIRPSSSPWAAPILFVAKKDGTLRMVVDYRGLNAQTVKNRYPSPRID
DLVDSLGGSTVYSSIDLQQGYNQIRIRNEDVPQTAFRTPLGHYEYVVLPFGLTNAPATFQTVMNRVMEPFIGRFVVVYLD
DILIHSRSREEHLRHLEQVFEVLRRERLHAKASKCHWAQTELEYLGHIISTSGVRPDPKKVRVVRDWPLPKELRQFLGLT
NYFRKYIRSYAALSAPLTDMLCGKANILPEWTPSAREAFEVVKKALADDVLLRYPDLTKPFSFEVISDASLRGTGAVLLQ
DGAPIAFTSKTFTPAERNYTTGEQELLGVIHALKEWRCYLEGPHDVRVATDHHPLFYLKTQPTLNRRQARWLEFLSRFHL
LWEHRAGKLNVADALSRHPSLNAITRRTKACTLRERILAGYAKDPWFGQSLNVXLRNEQGYWLKAMPTGRRSIVVPCEPQ
LRQELIDRCHGGPMGGHPGVARTLELVQRHHWWPGITADIESFVRCCDKCQRNKTLSGRQHGLLQPLPIPDMPWDSVSMD
FVVGLPRTQRQHDAIFVVVDRLTKMAHFVPTNTHVTAEKTAELFLANVVRLHGLPKTTVSDRGPQFAGMFWQHMARMIDL
RSDLSTAFHPQTDGQTERMNRVLADMLRNYCDGSPSTWDKVLSLAEFAVNNSVNRSTGQTPFFLNYGYHPATPTVRELDV
TVPTAKAFVQTMDQRLADAKRCLLAAQSRTEQHYNAKKRDVLFEPRQLVLLSTKNLRLRGKGIRKLTPRWCGPFEVEQMV
GNVAVKLKLPSNLKIHNVFHVSLVKPYRTDGTFQPLPVEQLPEEFSEDTTYPIDRVLDYRRRKVGRKYVDEYLVKWKGFE
SEHNSWEPADHFTPDMAAELQFIKSRSREDTTPKRRG
>Atlantys2_gagpol#LTR/Gypsy 73-5763 (Introduced one frameshift separating gag and pol). [Arabidopsis]
MVNNQIPGNTVDAEGNPIPPIQTDVPEAAAPATLAELRSMMAQLQQKVNDQEQANRSLAQQLEAATSQGQIRTTRFGARH
LQDRRAAADLNPTRLVFHTPGNTTRPVRRTAPEIGRDRTEPAILGNRETNRTERNEPQLPPPRAEVAEADQIGVSDDEDS
EENIRWAEEYAREQEISAIKLSLAKAENEMKLVRSQMHNAVSSAPNIDRILEESHNTPFTHRISNAIISDPGKLRIEYFN
GSSDPKGHLKSFIISVARAKFRPEERDAGLCHLFVEHLKGPALDWFSRLEGNSVDSFQELSTLFLKQYSVLIDPGTSDAD
LWSLSQQPNEPLRDFLAKFRSTLAKVEGINDVAALSALKKALWYKSEFRKELNLSKPLTIRDALHRASDYVSHEEEMELL
AKRHEPSKQTPRIDKSQPSAPNHKKGAQGGTFVHHEGRNFSGAHNYQADTPRGEAARGRGRGRGRGRGRESYTWTKDQPA
GNEQEYCELHKSYGHHTSRCRSLGAKLAAKFLAGEIGGGLTIEDLEAEKGKTEQVNAVANPEQAAPAANPEGPKRGRGNR
EADDDEPEAARGRIFTILGDSAFCQDTAASIKAYQRKADANRNWARPFNGPNDEVTFHESDTNGLDRPHNDPLVITLTIG
DFNVERVLVDTGSTLDIIFLTTLREMKIDMTQIVPTPRPVLGFSGETTMTLGTIKLPVRAKGVTKIVDFSVTDQPTVYNA
IIGTPWLNQFRAVASTYHLCLKFPTSDGVKTIWGNQKNARICFMAAHKLRNPVTESTADANHKKAKLGRAEEKSISEQLK
IEEARESTTPTPDPVILICLDDEKPERCVEIGGDLGEELTAELTAFLKENVNTFAWSPEDLPGVSVDIVSHELNIDPTFK
PIKQKRRKLGRERAEAVKAEVEKLLRIGSITEAKYPDWIANPVVVKKKNGKWRVCVDFTDLNKACPKDSFPLPHIDRLVE
STSGNKLLSFMDAFAGYNQIMMNPEDQEKTAFYTEQGIFCYRVMPFGLKNAGATYQRFVNKIFALQIGKTMEVYIDDMLV
KSMAEKDHISHLRECFKQLNLYNVKLNPAKCRFGVRSGEFLGYLVTHRGIEANPKQIEALLGMASPQNKREVQRLTGRVA
ALNRFISRSTDKCLAFYDVLRGNKKFEWTTRCEEAFQELKKYLATPPILAKPVIGEPLYLYVAVSDTAVSGVLVREDRGE
QKPIFYVSQTFTGAESRYPQMEKLALAVVMSARKLRPYFQSHSIIVMGSMPLRAILHSPSQSGRLAKWAIELSEYDIEYR
NKTCAKSQVLADFIVELPTKEARENPLDTTWLLHVDGSSSKQGSGVGIRLTSPTGEVLEQSFRLNFEATNNVAEYEALVA
GLNLARGLKIGKIRAFCDSQLVANQFNGEYTARDEKMEAYLIHVQNLAKNFDEFELTRIPRGENTSADALAALASTSDPS
LRRVIPVEFIEKPSIELGEEEHVLPIQISADQDDPDDCSSEWMEPIISYISEGKLPSDKWKARKLKAQAARFVLVDEKLY
KWRLSGPLMTCVEGEAICKIMKEIHGGSCGNHSGGRALAIKIKRHGFFWPTMIKDCENFSKRCKKCQRHAPTIHQPAELL
SSIASPYPFMRWSMDIIGPMHPSKQKKLVLVLTDYFSKWIEAESYASIKDAQVENFVWKHILCRHGIPYEIVTDNGSQFI
STRFQGFCDKWGIRLSKSTPRYPQGNGQAEAANKTILDGLKKRLDAKKGSWSDELEGVLWSHRTTPRRATGETPFALVYG
TECIIPAEMIVPSLRRSLSPENTPDNTQRLLDELDLIDERRDSALVRIQNYQNETARHYNSNVRQRRFHEGDRVLRKVFQ
NTAEPNAGKLGTNWEGPYLISKVIRPGVYELADLSGKAVPRSWNAMHLRKYYN
>Athila_env#LTR/Gypsy 3925-5790 [Arabidopsis]
MSSHSYESSMDADYNVDDVESWSTRPKREADEYRRFVEETERAVANDRRREEIARGKRSMTENYELIDEEMEDDAEYIPE
QTRKTTKSLMKEDKLTPGDYYKALKRNPFWGTRYPHPETMAELGILEDVQLLFEKCHMTTLMSHPYPTYEDETLQFLSSL
QVELFEGLSAVELREEGLGYLSFTIDDRDYIMAIKTLESMFGFPSGTGMKPKFAREELKSLRNTIGDTTSFNSARSKSNS
ICNPAIRYFQRAMANVPYAREISATVTNQDMETLDLALLSFLRYTKDGKTMKGDTNDTPPSMYLLNHLSSYRGWAMANDK
KNAKGALCIGGVVTPILLSCDVPLRPDPIQPRWMDIAHLKLAHVIEHKVYDGRYAFKFDHPSTGEATFLLPFSEMTTITV
RDNIDFSPPQEILHAVIGGSASRNAEEVEGQSDNEETNWENYDTSRYHFEEHKPPSRESKSLAEAHRKLNLTQRWCKFQD
KIIHKCVKAIDNMQKAISCTTSTSAITRDNPPEDMPSRRHDIAPPRQSAYQQRERAVPQEPARHSSHEVREHKRRKSARM
VRSSSKGRIMSGRRTRERRAEQPAGVAIEHNDEEMTEPHQEPVMPAEYTQADMNDYISRTFY
>BNINTMO#LTR/Gypsy 11-632 [Brassica napus]
WLEVSYLPVRKGRTSSAQWYVSELPIPEWKWDHITMDFVTGFPMTRNRKDAVWVVVNRLTKSAHFLLVRKGDGVDQIVRI
YLDEIVRLHGVPASIVSNRDPRFTSYLWQAFKKALGTRVNMSTTYHPQTDGQSERTIQTLEDMLRAVVLDWGDSWEKHLP
LVEFAYNNSFHTNIGMSPYEALYGRPCRTPLCWTQVGERSIFGPVDP
>CALYPSHAN2_MT_pol#LTR/Gypsy 1344-1355? [Medicago truncatula]
MLAREMPMNQRESQLFLSPKKTSDRVIPHDDDPLVISFQLLNWEIKRVLIDIGSSADVLYYDTFSKMGLSEEQLQPFKGT
LSGFTGEKVHARGYVTLKTTFGTGDQQKSIKIRYLVINAPSSYNAIIGRPSINLLDAFVSTKHLMMKYPLDNGRVGVIRG
DQKIARECYHASLKLGGKGRETLGVNLIDLDPREDYQQERIVPIEDLKDIVIGSDPNRTTKIGASLKEAEERNLIQLLQE
NFDLFAWSPSDMPGIDIKVACHHLAVSPSVKPVVQKKRKMGEEKRKAVDEEVKKLMEARFISEIKYPTWLENTVLVKKTS
GKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSGYNQIKMDPLDAPKTAFMTNQKNYHYEVMSFGLR
NAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTPAEGQHSVDLKEIFQQVRKANMRLNPAKCTFGVHAGKFLGFLLTKDG
IEANPDKCQAIINMRSPCSVKEVQQLTGRLAALSRFLSCAGDKAFSFFPSIKKKEKFEWTPECDKAFQRIKVFLTTPPIL
HRPTQGAVLSLYLSVSENALSSVLVEDSEEKEKPVYFVSRVFKGAELRYQKIEKLALAVVATARKLRPYFQSHRVIVRTN
YPIKQILSKPDLAGRMVSWAVELSEYDILFAPRNSIKSQVLADFMVEFSSPIETTTPLVWTLSVDGSSNLKGSGAGIVLE
GPGDLLIEQSLKFEFKASNNQAEYEALIAGMILAREMGVENLRARSDSQLMTNQISGEYQTKDSQLSKYLTSVRSFAKSF
NFFEVIYVPREQNARADLLAKLASTKRPGNNRTVIQEIVSAPSYETTEVLFTTQEAKGWMTPILQYLTGSFEPANEEERL
SVKKRAAKFTIVAGKLYKRGAVTPLLRCLGEEETELVLLEVHEGVCGSHIGGRSLVAKLLRAGYYWPRMTQDCCEFVKKC
DKCQRFSDKKIAPANELTSVFSPWPFHKWGVDIVGPFPPAPGQLKFLIVGVDYFTKWVEAEAVSKITAEQVIKFYWKKII
CRFGLPRNIVTDNGTQFASTRVVDFCKQLGIETKFVSVIHPQANGQAEAANKVILNGIKKKLEAAKGLWAEQLYEVKT
>Boudicca_pol#LTR/Gypsy 1027-4200 [Schistosoma mansoni]
HEKQFGKLPSRHALTATVAGEHSRLSYVTDVTTKVRYLVDTGAEVSVLPANLDDRLRESVLSLQAANGKPIATYGKRYVY
LNVGLRKPIHWIFVVADVSMPIIGIDLLQHHNLLIDTRARRLIDGNTKLSVCVTPCSGCRLSPVTIKHTIDPLYQAVLDK
YPGICQSQSKLPCVTSNVTHHISTTGPPVFSKARRLAPEKLRLAKNEFDHMMDLGIIRPSNSPWASPLHMVPKKDSNDWR
PTGDYRRLNAKTIPDRYPLPHIHDLTATLKGTTVFSKIDLVKAYNQIPMAPDDIPKTAIITPFGLYEFLRMPFGLRNAAQ
TFQRFIDDVFRGLNFVHAYVDDCLIASPDRESHLKHLDIVFDRLQRHGITVNIQKCQIGTNCLDFLGHTIDAQGIRPLRS
KVAAILDYPEPTTIKQLRTFNGLVSYYRRFIPKCASLMKPLTDQLRGNAKSISLDDIARKAFSPVKEHIVKAPLLAHQDT
QAPISIAVDASDSAIGAVLQQWVNNSWQPLGFFSRRLLDAESRYSTFGRELLAMYCAVRHFQHSIEGREFTLFTDHKPLT
FSLNSSSDKYSPRESRQLDYISQFTSDIQHISGANNVVADALSRISSLNSFQGIDLLKLAQLQKEDIDLQHELSSTTLKL
SIRQMGTGKETLLCDTSTGRDRPIVPKHYRRNVFNTLHNLSHPGARATVKLIAERFCWPGMNKDVREWARSCVSCQKSKV
IRHNKCPLGYFKTPDARYDHVHLDLVGPLPDSNGYSYLLTCVDRFTRWPEAVPIKDITAETVARAFVERWVENFGCPSTI
TTDRGRQFESGLFRCLTSLLGIMRFRTTAYHPQANGLVERFHRRLKASLSASNVSQWTDALPLVLLGIRNAVKADIGYTA
SQLVYGTTLRLPGEFVDPSASSLNMDLNSYTSRLTNAMRSVKPAHTRPQSTDVFVQPELRHSTHVFVRRDSHRRPLESAY
EGPFKVLQREPKYYVVDKNGTKDSISIDRLKAAYLEGNPSYVDFPSVQANDTATTLVVPYTTTDTQLDTSSTSIEKPKTT
RFGRRVRFPEHLNEYCT
>Athila7_gagpol#LTR/Gypsy 261-5859 via tfasty with Athila6B, 15 frameshifts and 8 stopcodons. With so many mistakes in the consensus or mutations from an ORF this protein is obviously not completely reliable. [Arabidopsis]
MNPDLKAIINGQANGDGHMPQHPPRAHQPIEAFDESNIRGNRNGIQTPPVENNNFEIKSSLINMVQSSKFHGLSIEDLLD
HLNQFYMLYSTVKINGISEDAFKLILFLFSLEDRARIWEKNLPQGSITSWDQCKRAFLSKFFSTTRTTRLRNEISIFTQK
SNERFFEALEEFNLIIRDRGKVARQGYKIQCPPHGFSKESILSTLYKGVLPKFRMLLDTTSNGNFLSQDIDDGLSLVENL
AQSDGNYGEDYGRTPRESNEMSDLHHKEIKALNEKIDKMILANQKPIHFVSKSDVYQGYQEHMEGCVEGQDEVNYVSGQG
YNKFNPNYRHPNLSYRSTNVENPQDQRYPPIKPPGFTQxPNYQPKPQGNFQTKPQAYHHNQHQGSSSNPPPQADDTNTLL
RKILEGQGSGAFNLATQMKGMHTKVDDIYGELNAKIKRLNRHVFSQSSSTSKPANENLSGKPEPNPKEYINAITLNSGKE
FPSGELNRDIEPKQKEVVSEIDEEEVLNEKVCQEEIDVEKCIIDKEKGKIVEESKEDKTQVEISTKDKSFSKKETLFVPP
PYEPKLPFVDRFKKQQIEKYRAMFDEQMKEVTITMPIIDVFLLNPTYNKFLKDEVVEKKKTLQGMVLLTHDCSTIIQNKI
VAKKLDDPGSFTLPCALGPLSFDHCLCDLGASVSLMPLLIAKHLYFTRYKDCRISLVLADRSIRTPVGLLKDLPVIIGHF
EIPMDFVVLEMDEEPKDPLILGRPFLRTTGVMIDVxRGKINLNLGxEVLTFDINKVMKKPTIEGQVFYIEEMEALADELL
EELAMEDALHSTLTIKxGEFWLLESDSEGYEKILDSHKSSNEDGTFLCxKKVVMRLVLFKLKRxPTRRKLHNGKSHIDGD
WSELKAPKVELKPLPKGLRYAFLGTNSTYPIIINEELSNLEVSTLIEELKKYRKAIGYSLSDIKGISKTLCVHRIHLENE
SMTSVEHQKRLNSNLRDVVQKEILKLLDAGIIYPISDSTWVSPVHVVPKKGGVTVVKNDNDELIPTKTITGHRMCKLNAT
SRKYHFPLPFIDRMLERLANHTHYCFLDGYSGFFQIPIHPNDHEKTTFTCPFGTFAYIRMPFGLCNAPATFQRCMMSIFS
DLTENVVEVFMDEFSVYGNSFASCLSNLCKVLKRCEQANLVLNWEKCHFMVKVGIVLGHKISKKGIEVDRAKIDVMTNLP
PPNLVKGIRSFLGHAGFYRRFIKDFSKIARPLTRLLCKEVAFVFDEKCLEAFKKIKKELVSAPIVQALDxNLPFEIMCDA
NYAVGAALGQRKDKKFHVIYYASRTLSDAQVKYATTEKELLAIVFAFEKFRSYLVGSKVIVHTDHAALRHLLAKNDAKPR
LLRWILFLQEFNLEIKDKKGIENGVMDHFSRMRIDNDIPIDDSLPEEQLLAIRLLDASHETYMKLEEVKRLKENCPWYAD
YANYLACGKEPPNLTSYERKKLLKDINRFYWDEPFLYTLCKDKIYRRCVRRVSKEEEEGILLHCHGSSYGGHFATFKTVS
KVLQAGLWWPTMFKDAQEFISKYDSCQRKGNISRRNEMLQNPILEVEIFDVWGIDFMGPFPSLYGNSYILVAVDYVSKWV
EAIASPTNDAKVVLNLFKTIIFPRFGVPRVVISDGGKHFINKVFESLLKKYGVKHKVTTPYHPQTSGQGEISNREIKPIL
EKTVGTTRKEWSVKLDDALWAYRTAFKTPIGTAPFNLLCRKSCHLLVELEYKALWAIKLLNFDIKTAEEKRLIQLNDLDE
IHLETYxNSKIYKERTKAFHDKKIVPIDFKVGDQVLLFNSRLRLFSRKLKSRWSGPFKIKEVRPYGALVLWNKTGGEFVV
NGQRLKSYLANEHVEEETTVSLLEPQTA
>FFV_env#LTR/ERVL gi|9629927|ref|NP_056915.1| env [Feline foamy virus]
MEQEHVMTLKEWMEWNAHKQLQKLQSTHPELHVDIPEDIPLVPEKVPLKMRMRYRCYTLCATSTRIMFWILFFLLCFSIV
TLSTIISILRYQWKEAITHPGPVLSWQVTNSHVTMGGNTSSSSRRRRDIQYHKLPVEVNISGIPQGLFFAPQPKPIFHKE
RTLGLSQVILIDSDTITQGHIKQQKAYLVSTINEEMEQLQKTVLPFDLPIKDPLTQKEYIEKRCFQKYGHCYVIAFNGNK
VWPSQDLIQDQCPLPPRFGNNLKYRNHTIWKYYIPLPFKVSSNWTRVESYGNIRIGSFKVPDEFRQNATHGIFCSDALYS
NWYPRDLPSSVQQSFAQAYITKVLMKRKKQPTLRDIAFPKELSPVGSGMLFRPINPYDICNMPRAVLLLNKTYYTFSLWE
GDCGYYQHNLTLHPACKNFNRTRQDHPYACRFWRNKYDSESVQCYNNDMCYYRPLYDGTENTEDWGWLAYTDSFPSPICI
EEKRIWKKNYTLSSVLAECVNQAMEYGIDEVLSKLDLIFGNLTHQSADEAFIPVNNFTWPRYEKQNKQQKTSCERKKGRR
QRRSVSTENLRRIQEAGLGLANAITTVAKISDLNDQKLAKGVHLLRDHVVTLMEANLDDIVSLGEGIQIEHIHNHLTSLK
LLTLENRIDWRFINDSWIQEELGVSDNIMKVIRKTARCIPYNVKQTRNLNTSTAWEIYLYYEIIIPTTIYTQNWNIKNLG
HLVRNAGYLSKVWIQQPFEVLNQECGTNIYLHMEECVDQDYIICEEVMELPPCGNGTGSDCPVLTKPLTDEYLEIEPLKN
GSYLVLSSTTDCGIPAYVPVVITVNDTISCFDKEFKRPLKQELKVTKYAPSVPQLELRVPRLTSLIAKIKGIQIEITSSW
ETIKEQVARAKAELLRLDLHEGDYPEWLQLLGEATKDVWPTISNFVSGIGNFIKDTAGGIFGTAFSFLGYVKPVLLGFVI
IFCIILIIKIIGWLQNTRKKDQ
>ERV3-3_AMi-I_3p#LTR/ERVL 3819..6029[Crocodylidae]
MRAWVLLLMGLNWTWGALYYPGWWKSTSRVLPLKATWPNASCPPMAHQGYVSEVFLLHAWNSSDRQTWQLADTTSSPYGA
HWCVWIDTTRSKGAQLWGATHRGVHVSDPKENVTFHYKVTVAPGTNWTLLANDDEYITEIEEHQILGXEGTYDHAVHNGL
RIDFVLVFSNIVGSLDCEPGRHPIPAEVWEALCGQAEFPHLNPGRIQGLRNGGKISFWISVGPTYPEKIPTVLGARVPEN
FVVFPSLFLERFVVLQWEINVTRTHPWCSKWAEPILLAWLGNPGLHRKFRRDAATVLGSVGSAGAVLNQMDIEVVRNKLA
RMGQLTRQALEGQIVANAEYQENHVKTITVAVQPLKQLHAVMHSVLEGMRDLANETGSAISCVTMQTFVLHQYERQALWI
KSGDPAVISNSYAEWCPECKPLFAKVISSGINKPLRGYIHVRSVGVETRTXPLYDYVPIPIVLVGRVWAPRSPAKWVTQA
GELLDPRGCEQWGRHEWMCYHENFLMDPCRLHQDSVGDCVLDGIFNQTTVVVNNAIGCLCVASVTPVTWNDGNVSQAPVR
ECRCNATAVESGGHIYAQPTYSRSLSLAKVFPVNWTMSLGPSWEGVYQKLGELEKMISSYATALNNEKQASLHIIHQKGK
LLKLTAELESVSGHHWYDIFLGYSPTWTGLMNFALHPVVIILLCIAILCCLMCMLTCYARRLYGRVQGLMDYVDGYVTLR
NFDRHEYMQMQPVREGL
>MERVL_pol#LTR/ERVL 1791-5339 [Mus mouse genus]
RGGQVPLRKDLDKTLKGFAVTLSPVLPQRDLRPFTRVTVHWGKGNNQTFRGLLDTGSELTLIPGDPKKHCGPPVKVGAYG
GQVINGVLTDVRLTVGPVGPRTHPVVISPVPECIIGIDILRNWQNSHIGSLNCRVRAIMVGKAKWIPLELPLPKKIVNQK
QYCIPGEIAEITATIKDLKDAGVVVPTTSPFNSPIWPVQKTDGSWRMTVDYRKLNQVVTPIAAAVPDVVSLLEQINTSPG
TWYAAIDLANAFFSVPVHKDHQKQIAFSWQGQQYTFTVLPQVYINSPALCHNLVRRDLDRLDLPQSITLVHYIDDIMLVG
PSEQEVATTLDSLVTHMRIRGWEINPTKIQGPSTSVKFLGVQWCGACRDIPSKVKDKLLHLAPPTTKKEAQRLVGLFGFW
RQHIPHLGVLLRPIYQVTRKAASFVWGLEQEKALQQVQAAVQAALPLGPYDPADPMVLEVSVADRDAVWSLWQAPVGESQ
KRPLGFWSKALPSSADNYSPFEKQLLACYWALVETERLTIEHQVTMRPELPIMSWVLSDPASHKVGHAQQQSIIKWKWYI
RDRARAGPEGTSKLHEEVAQMPMVSTPVTMPSAAKHAPIASWGVPYDQLTEEEKTRAWFTDGSARYAGTTQKWTAAALQP
LSGTTLKDTGERKSSQWAELRAVHMVLQFVCKKKWPDVRLFTDSWAVANGLAGWSGTWKDHNWKIGEKDIWGRSMWIDIS
KWAKDVKIFVSHVNAHQKVTSAEEEFNNQVDKMTRSVDSQTLSPAIPVIAQWAHEQSGHGGRDGGYPWAQQHGLPLTKAD
LATAAADCQICQQQKPTLSPRYGTIPRGDQPATWWQVDYVGPLPSWKGQRFVLTGVDTYSGYGFAFPARNASAKTTIHGL
TECLIYRHGIPHSIASDQGTHFTAREVRQWAHDHGIHWSYHVPHHPEAAGLIERWNGLLKMQLQHQLGGNSLEGWGRVLQ
KAVYALNQRSIYGTVSPIARIHGSRNQGVEKGIVPLTITHSDPLGKFLLPVPITLGSAGLEVLAPEAGVLLPGATTNIPL
NWKLRLPPGHFGLLMPLNQQAKKGITVLGGVIDPDYHGEIGLSLHNGGKQHYVWSVGDPLGRLLVLPCPVIKVNGKLQQP
NPSRMTKDADPSGMKVWVNPPGKEPRPAEVLAEGEGNTEWVVEEGSYKYQLRLRNQLQKRGL
>Athila6A_gag#LTR/Gypsy 173-2905 [Arabidopsis]
MQTRSRGNQNLLFNDNIDRIARQLRTQTETDTMAAVVDEQVQPNNIGAGDAPRNHNQRNGIVPPPVQNNNFEIKSGLIAM
VQSNKFHGLPMEDPLDHLDEFDRLCSLTKINGVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSN
SRTARLRNDISGFTQTNNETFCEAWERFKGYQTQCPHHGFSKASLLSTLYRGVLPKIRMLLDTASNGNFLNKDVEDGWEL
VENLAQSDGNYNEDYDRSVRTSSDSDEKHRREMKAMNDKLDKLLLVQQKHIHFLGDDETFQVQDGETMQSEEVSYVQNQG
GYNKGFNNFKQNHPNLSYRSTNVANPQDQVYPSQQQNQPKPFVPYNQGQGYVPKQQYQGNYQQQLPPPGFTQQQQQPAST
TPDSDLKNMLQQILQGQAAGAMDLAKKMAEIHNKVDCTFNDLNIKLEALTSKVRYMEGQTASTSAPKVTGLPGKSIQNPK
EYATAHAITICHDRELPTRHVSTSITEDSDVQDGEVSTQIEISVVGLDHSAGSRFQTQSNLDEKAAIIERMVKRFKPAPL
PSRALPWKFRKAWIERYNSLAEKQLDEMEAVMPLIEVLNLIPDPHKDVRKSILERIKIHQDSEDECDAIPSRTTVKRSVQ
EKLEDPGTFTLPCSIGQLVFSNCLCDLGASVSLMPLSVARKLEFTQYKPCDLTLILADGSSRKPFGLLQDLPVMINGVEV
PTDFVVLDMEAEPKDPLILGRPFLASVGAMIDVRDGRISLNLGKHIKLQFDINETSQRSAVEERIRAQPQPSNSITRPST
ASTPDLRDLKKKSDEQEETIEKLAQTVEELKSKLDQMQEIAKSKCGNNTIPRKKITSRWSEEIDYPPEEKEAYFEERRIE
YSATHLSREDAEYDDEIREDYADPLYHPFSS
>Athila6A_env#LTR/Gypsy 4237-6180 [Arabidopsis]
MSNYSGESSMDADYNVDEAESWSTRPEREQQAYESFRAETQRSVARRNERRAEIARGKRAMTSRYELIDEDIDVEYEPES
WHRETKLLNKPDEVTVEEYIRLFELNDFWGTRYPCYETLAQLGLLEDVQHLFEKCHLETLMSYPYVAYKKETIEFLSTLQ
VELYQGLTADELESEGLGFLTFSVNEQRYQLSIKSLEGLFGFPSGKGTKPKFEREELKDLWLTIGNDLALNSARSKSNQI
RSPVIRYYQRSVANVLYPRESTGTVSNTDMEMIDSALKGILRRTKGKKVLKGDLNDTPPVMLLLIHLCGYRKWAHTNGRK
KVRGALCVGGVVTPILIACGVPLTSPGFDPRMMDLDHLRRCEFLEYDMVGDFYRYKFEHSLTRTANILLPCIEATTILQG
ENIDFRPARDYLYFESAPPTDDNVPTTEATEDDIAETDEDREEEYDTSMYHFSEHVPPARESKSLSEAHRNNSKLQRWCK
KQDRLLIKCFKAITFLTDKISCFSSTTAIPQGERPQDMPSRRYDAPGPSHHRPEPSHHRPEPSDRVVPPVPARHSSFEPR
ELGRKKKAALARSGSRSTRLLQSRSLRDRGAGRSRRREVEYHQSGAGRDEGAEVEYPQGEAETQQGDSSMAWEQSQAAID
DQLRSFFH
>Copia-8_DR_gag#LTR/Gypsy 1-399 C-terminal fragment [Danio rerio]
EDSAKNMDPAGIQIMRLRQDARSIEEYVEDFINLAHRTTXSEVCLMIFFHGGLSEPLYSNMPLHNPHWTLAQFIDLALQM
SGSSFTIGEVDENPNNLLGGGGCREQDPLATGLATHCPQPAHKMAAPSQPAHK
>Gypsy2_Dmoj#LTR/Gypsy 62-4544 via tfasty with Invader3, 2 frameshifts. 130 AA deletion at about AA 1130 [Drosophila mojavensis]
MKLSIDEVSVVQLKKWLAALGLSTQGCKTELVARLNGVPANLRGSAPEVEQGEEESDQTGVSQTVQMQQEEIDRNENILR
ELSEQIDAAKKQLKNFHTRQLDRDGNSKRAEISANGVDAEVEFEERATDARQKGASENCVINTTHNDEVMSMMFKLAKEI
MVEFTGEESISNWIAQLNNVSQLYQLTDMQKKLLCMAKLKGKAMQWIHDDSSRIVQPLGTLLDGLAAAFGSKISKAEMRR
KFGARIWSVDEKFTQYYEEKIRLAREIRLDVDELLDGLIEGIPNAVLRAQARIQCFEDPSKLVRAFAEVRLPLHRSTGGK
GTTAVGPGLDNAMKETRCFNCNYKGHWARDCRKPKREKGTCYHCGAKDHMVAQCTKRKDDIGNNFVRFISIHFKSKDNAS
IIAECLIDSGSPISFIKKSCVPVGIKLKAHAENYFGLNESQLNVIGKTFVHIFKKFEKINFWLIVVPDESMRSEVILGRD
FMEACNLYVDPIALRMISVERAAGTLDKSLENTLLGNTSLDKSLENTLLGNTSLDKSLENTLLGNTSLDKSLENTFLGNT
SLDKSLENTFLGTTSLDKSLENTLVNKENEELGKKLVNKVLENEELGKKLVNKVLENEELGKKLVNKVLENEELGKKLVS
KVLENEELGKKLVSKVLENEELGEKLVSKLLENKELGRKLVNKVLGNKELEEKLLDKEEIDRSKECLEKSMEINSKSVFD
DNFENSMLQINVVEGDNEKEIYIIGENISYDVRKKLIRLLKVEYVDAERPVKPKKKCEMNIRIETSKTFSCSPRRLSYTE
KEKLQIMLDEYLRNGIIQPSCSEYASPIVLVKKKTGDLRMCVDFRKLNKIMIKDNYPLPLIDDLLDRLVGKSIFTKLDLK
NGYFHVFVEKESVKYTSFVTPLGQFEFLRMPMGLKTAPQIFQRFVNDIFADLIKESKVIVYMDDIMIASKDVSEHLKILE
EVLKRLVENKLELRLDKCEFLQNKVKYLGFVISEDGIRADDKGLEAVKNFPIPNKVQAVQSFLGLCSYFRRFIKDFSTLA
KPLYDLLRKDRKFQFEEKELNCFLCLKEKLLEAPVLALYNHKDDVELHCDASAMGFGAVLLQKKEDGKLHPVFYFSKRTT
ETEAKYHSFELETLAIYVPEKMEEHVLYKYHNELGHVGRDKMLNAISKSYWFPNMKKKILEHIENCLQCIAFSPRTGKAE
GLLHSIPKGNKPFQIIHIDHYGPVDNGRSKKYIFAVVDGFTKFVRLFTTKTTSTREVVKALREYFRTYSKPECIISDRGS
CFTSTEFDQFLEEAKVKHIRIATGSPQANGQVERINRSLGPMIAKLIEGDNGQHWDSIIERVEYVLNNTQHCSTKQLPSV
MLFGIAQKGEISDSLGEQLEKIIGLDICSSQNLEDIREQAQHYQSAAQTRNEENFNNARKAAKVYKPGDYVMVKNFDNTV
GISRKLIPKSKGPYVIDKVLKNDRYLIKDVDGFQLSRNPYQGVWSASNIRHWIKA
>Gypsy1_Dya#LTR/Gypsy 124-4239 via tfasty with BLASTOPIA_gagpol, 2 frameshifts. [Drosophila yakuba]
MRVSEKEIKQEPSRIPISKGKQPYYTRSVAAADKQIKMSTPLESDCEISGNENTKEMKIVQELFATSGEQCGNARSNMQN
LVATSGEQGGNARNNMQNHVGTSGEQRGAAGLIESSSIDENTRTLKDLVQLLAIKIGAEERNNGCSITAESFAKIIPEFD
GESMPVKNWFENFEMNAAAYDLNIKQMYVQPRAKMTNTAKLFLDSTYVHQYSEMRMLMETEFSRQYVCSADVHEQLRDRK
KRKQESFHEYLLQMKKIASLGNIDVRSVIRYVVDGLNMRSDFRYSLYSCKSYKELQEQYEVFDRVVEKPFNPNEGKWTSS
QKKQHEGQHDRKSHCFNCGSLDHHRKDCKSAVKCFSCNKEGHMSRDCPGSAAGVQVVRSSSRMKNATINNVAVECLVDTG
ADVSILRKYIFNKIPNVTLERCASKLRGLGRKITCTVGYFLAEVAVDKEMTRHNFVVVEDEDIEYDALLGFDFVSKFDFS
LSADGYKFSSPLGEKACEEPNQMSIYNIINSDDELDVPPQFAKEVSLLINNYKAVDSVAEVPVRLRIVPDGEIIPFRQSP
SRFAIAEENDVEKQINEWLDTGIIRPSTSNFASRLVLVNKKDGTRRICVDFRKLNSMVLRDCFPVPIIDDVLQKLQKARF
FTVMDLENDFKNDSKKFTAFITKFGLYEFNRTPFGFRNSPAVFIRYVNHVFQELMSRDVLDLYMDDIIIHAETAEQCLEK
IKLVFNRAGAFGLKIKWRKCHFLHTHNIEDGNIWPGQEKTAAVSKFPVPKNVRAVQAFLGLTGFFRKFVLNYSQIARPLT
DLVRKDVCFQMAHPQMNAFHSLKDALTKEPFLKLYIRAAKTELHTDASKDGFAAVLMQWFDGRLHPIQYWSKKTSEAESR
QHSYILEAKAVYLAVKKFRHYLLGSPFKLVTDCSAFKQTLQKADVPRAVTQWIVYLQDFEFAVEHRPGERLKHVDCLCRY
PDRVMLVSSEITARIKVAQRKDEMLKAIMEILESRPYEGYKMKAGLVFKEVNGNDLLVIPKSMEKEVIVEAHSAGHFALQ
KTVQQLYWIPHLEQKAQQVVNNCVRCIIFNKKLGKKEGFLSCIDKGDQPLHTLHVDHLGPMDATKQYKYIFAMVDSFTKF
IWLFPTKTTSCEETLKKLKIWSEVFGNPVRMVSDRGSAFTANLFAEHMKENGIEHVWSTTGVPRGNGQVERVNRTILSII
SKMSADEPAKWFKAVPDVQRAVNSHVHASTKKSPFELLFGVQMNNKLQLLEEEMYLNFDDQRQQLRKDAKIEIQRAQESY
KRNFDLKRKPEVAYKVGDLVAIRRTQFVAGKKLAGEYMGPYEVLTVKRNGRYEVRKAAGFEGPCKTSTSCDYMKLWRYVQ
DNEDDWSSGTDE
>Gypsy3-NVi_pol#LTR/Gypsy  [Nasonia vitripennis]
QPLLLPSAFWTSKQPGKLGRLPGALAVSDSPASAENRLHVLDRTTNTSFLVDSGSVLSLLPRSAVRDRKLAVQPLRLVAA
NGTPVHTFGRRLVTLNLGLRRAIPWPFVVADVPVAILGADFLHHSGYLVDLQHHRLIDSTTTLSTPAEIRATAIHGVSVV
AGSSTAISQDEYQRLLAEFTDLAQPNEGRATLNGEVVMHEIHTTGPPVHSRPRSLYGERLEAAKDYFNKLIQRGIIRPGS
GQWSSPLHMVPKPKGGFRAAGDYRKLIASTIPDRYGLPRIEDLLQDCRDKGEDNVVVDALSRPCSTISMPSLLDPATIAA
AQDDGEELPHLLKTGILDLQQLAVQQHNIYCNVLKNVVRPYLPGKLRRLAFDTVHRPAHPSVRATVRMLADKFVWPGMRK
DANSWAQSYVSCQRAKVQRHNREAIQSFEVPDNRFEHVHMDIIVMPFVGDLRYCLTMIDRFSRWPVVVPIADIRAETIAR
SFFEHWVAYYGTPITITTDQGTQFESALFALAQMIGSRRIHTTPYHPQANRLIERFHRTLKAALMCEEHTPWPERLPIVM
LGLRSCLKEDLQASPAEMLYGTTLRIPGDFFTSDSAPADPGTFAGKLRALFRDIKPVPAAHHGNYKPFKLKRLATCTHVY
QRVDAVRKPLVPPYVGPFKVIRTTSDKVFIILVNGQEKAVTTDALIPAHQDISDAPSTTPMEPAATSPPIDTPEAKEKSG
DSTPSDAQSKEAEEEDFSVLEHPGAKKKVSFASQGKLTKGGV
>Gypsy3_MT_pol#LTR/Gypsy 6272-9745  [Medicago truncatula]
MCRLEIDEPVEQHNPMISPNFEFPVYXAEEEENEEIPDEISRLLEQERKTIQPYGDELEVINLGTKEDKKEIKVGASLET
SVKKQVIELLKEYVDVFAWSYXDMPGLDTDIVVXHLPLXPXCPPVKQKLRRTRPDMALKIKEXVQKQIDAGFLXTSNYPQ
WLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWG
TFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDXMIVKSITEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRS
GKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFD
SIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRL
RHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRSQKAIKGSILADHXAHQPLEDYRPIKXDFPDEEI
MYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGXHIPFTARLRFDCTNNIAEYEACIMGIEEAIDL
RIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHXPRDENQMADALATLSSMIKVNHHNDVPLI
SVKFLDRPAYVFAAEAVFDDKPWFHDIKVFLQTREYPPGASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEA
DLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNXLSSPWPFSMWGIDMI
GRIEPKASNGHRFIXVAIDYFTKWVEAASYANVTXQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEH
HNSSPYRPQMNGAVEAANKNIKRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRV
LMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMXQAFDKKVRPREXKEGDLVLKKIFSFQPDSRGKWAPNYEG
PYVVKXAFSGGAMTLQTMDGEELPRPVNTDAVKKYFV
>Gypsy3_AG#LTR/Gypsy 80-4312 [Anopheles genus]
MNNENLETVINQMAQLLQQMAAFKTRSPDEILESLSKTIEEFRFDEENNITFEKWYVRFKDLFQNDASSLNDEAKVRLLL
RKLETSAHSRYVNYILPKQPHENSFEETVNILKKIFGKQYSVFHKRYQCLQIVKSALEDIITYGGRVNKACEDSEFENLK
LDDFKCLIFICGLQAPEFSDIRARLLSRIENATPEAKVNIQTLMAEFQRLINLKADTTMIENQSRSKHSVHAVSEKKPYR
LPQPSRFDNSKDQRQPKSDSNTVPRTPCWQCGKMHFVRDCNFTDHLCKVCKNVGHKEGYCKAMRSKSSNNNTYQKSEKNQ
NQNQKKSQGIFVNHVTKNTAKRKFISIIINGITTSLQLDTASDITVISKTTWQHLGQPKLSQASIEASNASGEQLKLIGE
FECEVILNAITEKCVCFVTSSPVLNVIGIDWIDRFNLWAIPFDVLCKKVSSACPKDRIVQLQSKYPTVFDDSLGHCTKTK
VKLFLKPNVKPVFCPKRPVPFNTIALVDAELSRLQSLGIITPIDFSEWAAPIVAIRKPNGKVRICADYSTGLNEALESNH
YPLPTPEEIFAQLNGSVVFSIVDLSDAYLQVEVEDESKHLLTINTHRGLFQFNRLAPGVKSAPGAFQRLVDGMIADIPGV
RTFLDDAIIFGKTWEAHKQSLDTFLQRLKEYGFHVKLEKCHFYQTEIVYLGHVVDRNGIRPDPEKLKTIASIPAPTNISE
LRSFLGAVNFYGRFVRNMHELRHPLDQLLKKDTKWKWNSDCQTSFEKFKKVLQSDLLLTHYDPNLPIIVAADASSTGVGA
VIFHKFPNGYLKAIQHASRTLTSAEQGYGQPEKEALALTYGVTKFHKYLLGRKFTLLTDHKPLLSIFGSKKGIPLHTANR
LQRWALMLLNYDFTIEYVSTTEFGCADMLSRLIDRCKQPEEDYVIASISLEEDIQNVMHESLKQVPVSFADIQKATRLDE
TLQAVLKFIREGWPNEASSIKNQDIRSYYTRKESLTHVDGCILFHNRVVVPNIYRKKVLQQFHRGHPGMVRMKSISRSFV
FWPGMDVDIENFVRRCTSCCTAGKAPIKETPESWPVPEKPWSRVHVDYAGPVDGVYFLVVVDPYTKWPEVYATKTTTAKT
TIKFLTQSFATFGVPETIVSDNGTQFTSFEFQAFCKQLGICHIRTAPYHPQSNGLAERFVDTLKRTLRKIRAGGETLDEA
LQTFLQVYRTTPTPDKSPAELMFQRPIRTVQSLLLPPVSRSRNEKPEAGRKFFDPGEAVYAQVHRNNSWEWKPASIVERV
GRVNYNVFLEDNQRIIRSHANQLKKRLQEETSCGNRNCHDTGNLLTIFFDEFELGTPQAVENSIEMTEQEHYYSADEESA
EEIEGENWQTSSSTVTTQATPPMPASSAQPVKAERPRRIRRPPARFEPYW
>GypsO_p2#LTR/Gypsy 5033-5797  [Oryza sativa]
MGAAPCNSARLPCKFGARRRAPWFGRTRGSAEPFSAPFGPRSAARSLSPRHVTRTKIRGDSPARRPTTGELGLLKARCLF
QDDEKAAPPPAERYVGTLFTKAGDEVLHKYTTPTATPSTPKEERFRIQGVRTPGGGYGKGLLRPLTASEKEGAAESRSPP
PMKVKRHLTPPPIVRAPGQFQEDEVKSPEPSIHKLAAQVKKLRKENIELRDRNAELGVELAELRNNFDTLSRGLCAKIKR
AFIEMGKENKYYAN
>GmOgre_gag#LTR/Gypsy 2791-6573 [Glycine max]
MSWSHVSTPKSLCKSNHSYISSLACIFFLYPLLTFGFLGKNTITKRAXRXPYRTRSKSRTMGDQEETQEQMKADMSALKE
QMASMMEAMLGMKQLMEKNAATAAAVSSAAEADPTLLATXHHPPSNIVGRGRDTLGHDGSPHLGYNRAAYPYGLPPNYSP
PXLQEDAGHIASPVXEXEPPQQPDEVHKDPQDYARRDVEFYPPIPEGPAPGTLPQPNIAAXPIVLSMEGPPPATEERRKL
DLLEERLRAVEGFGDYPFADMTDLCLVPDVVIPPKFKVPDFDKYKGTTCPKNHLKMYCRKMGAHSKDEKLLIHFFQDSLA
GAAVVWYTNLEASRIRTWKDLITAFLRQYQYNSDMAPDRTQLQNMFKKEGETFKEYAQRWRDLAAQVAPPMVEREMITMM
VDTLPVFYYEKLVGYMPSSFADLVFAGERIEVGLKRGKFDYVSSTXXNAKRIGATGAKRKEGDAHAVSSTPAWVKPXQTP
HGTHQYAQHHPSFSAHXGNASSSXPVQPKAPTQREAPQVPTPNTTRPAGNSNXTRNFPPRPXPEFTPLPMTYEDLXPSLI
ANHLAVVTPGRVLZPPFPKWYDPNATCKYHGGXPGHSXEKCLALKYKVQHLMDAGWLTFQEDRPNVRTNPLANHGGGAVN
AVESDRPXRSKPLRDVATPRRFIFEALQKGGVIPHSGCKEDSCLLHSGEXHDMETCLXVEELLQRMIDQGRLEVGIEGKE
EQHICMQSTXGSBVAKPKPLVIYFTKSAASQKPGHPLXAKPVPFPYQNSHAVPWRYTPPXXKEEEXTDVSSLSAKVTNIT
GLSGVTRSGRVFAPPDLPVQPADVKGKGKVVEEQDGEAPHASNKDIPAKXXPEKKDGXKEVSLEEASEFLRIIQQSEFKV
IEQLNKTPARVSLLELLMSSEPHRALLVKVLNEAHVAQDISVEGFGGLVNNITANNYLAFAEEEIPAEGRGHNKALHVSV
KCMDHIVAKVLIDNGSSLNVMPKSTLEKLPFNASHLKPSSMVVRAFDGTRREVRGEIDLPVQIGPHTCQVTFQIMDINPP
YSCLLGRPWIHSVGVVPSTLHQKLKFVVEGHLVIVSGEEDILVSCPSSMPYVEAAEESLETAFQSFEVVSISSVDSLFGQ
PCLSDAAVMMARVMLGNGYEPGMGLGKDNGGITSLIXTQGNRGKYGLGYKPTQADMKRSIAGRKNSGQSSRWRQESEGSP
PCHISRSFISAGLGDXGQVFAICEDDXPSTLDLVRPCPPDFQLGNWRVEERPGIYATSIM
>Daniela_TM_gag#LTR/Gypsy 88-3001 via tfasty with RETRO1, 1 frameshift and 2 stopcodons. [Triticum monococcum]
MPPKKKASEAAAPSAPNPPSPEQTAGGVDAGGRTGADEGAHGAARSKDKAALLIGGAVGSHNDRAHSKTSASVHAPHPSQ
EARDQQRHGTHSTIRLLDQDRAGGFRSAQDQHACQRAGASGAWSPGRDTAPSNMVRRPSISRSSHRSPLPPATSAEALAR
AQLLLDYPPAADKIDDWRATIQSLIGFANGDNPRQPSASQPRQVSQARTGGDKTGGGATTVHSPPRRPGSPTRRIHHDSD
STASSDPRARRDQRQVLHERQQEDARTRIEHRREARRQSDQRAGPSVDMHVPGEPGDLPYAGGCPAFTRELRQVQWPNKK
NFKPDVPEKYDGKSHPSEFLSIYTIAVQAAGGRDDKILANYFLLVLKPNVRSWLMHLPDNSISSWADLCHQFVGAFTGGH
KPHGQESDLHLLAQKEGEPLRKYIQRFSRVQHNIPDVHPAAVISAFHHNVRNRRMREEMAMCKIKDISELYALADKCARA
EEGRKLPGETAGAGGSDSEDAAPAKKNRRRNNRKKKGKDVLVVExSGNDGGAKKAKVGSSDKEIAACTNCQAVAVADKQD
GTDKxYCKIHRTKGHDLQSCKKVEQLVQQQKAEYERRDKERAQGGAGETGKKRAGQGGRRGKAKQRQGDRPPCGRDNDED
DDDDEDMEDVETSEQEFQKATEVLCVDGGACLHTSHRQLKQWVREVNAAEPPLESRKLLKWSSTPIIFDIEDHPDRTTAV
GCLPMLVSPTIRNLKVTKMLVDGGAGLNLISSAVLQKLQIPDSELEETGTFQGINPGRSKPKGKVTLPVTFGSELNFRTE
RVTFDVADFPLPYNGILGRPALAKFMAASHYAYNMLKMPGPISVISVPGDKKDALICADKIYREAAAATDPNHLPLKLPV
GRRRPSPTRVLMPTPASAPLRSAALPSRTHHRAPSASVRRQWRLRQRPRKCPPRRTTLVVPSPSVPLLTLNRKARSLLPA
GERRGVCVATV
>Grande1_ZM_pol#LTR/Gypsy From gi|33113959|gb|AY325816.1| Zea mays BAC clone, via tfasty with RIRE2_pol, 4 stopcodons. [Zea mays]
ESALVQFLQDNRDVFAWQPADMPGVPRELAEHKLKVYPQARPIRQKLRRFTPDKREAIRAELARLVAAGFIREVLHPEWL
ANPVLVLKKNKVDWRMCVDYTDLNKHCPKDPFGLPRIDQVVDSTAGCSVLSFLDCYSGYHQISLAKEDEEKTAFITPFGA
FCYTSMSFGLKNAGATYQRAIQTCLADHWGKRVEAYVDDVVIKTENSENFIEDLQLVFNSLRRYRWKLNPEKCVFGVPAG
KLLGFIVSHQGIEANPDKIEAIMKMEAPRSQKKVQRLTGCMAALSRFISRLGEKGLPFYKLLKKVDKFQWTSEAQEALDA
LKKFLTTPPVLKPPRRATPTQPAEDLLLYISCTTHVVSTALVVExVEEGHAYPVQHPVYFISEVLGPSKKKYPQVQKLLY
AVLLTARKLRHYFDDHKVIVVTGFPIGDILHNKEAIGRIAKWACELGSHDIEFRPRTAIKTQALVDFVSEWTEQQVPDNP
ETTEVWRMYFDGSLKLQGAGAGILFTAPGGEHLKYALQLLFPASNNAAEYEALIHGLNIAISLGVKRLMVYGDSLVVISQ
INKEWDCSSDSMGKYCTAVRKLEDKFEGLEFHHIERDRNTAADILSKLGSGRTQVPPGVFVQEILQPSISMNQAEECNVM
DQPGSDSDDWRKPIIKYIKNEEEPDDKNSAGVLMKxGRTRxQSAHYTLIGEVLYRRGASGVLMKCILPSTGKQLLEEVHA
GQCGVHAASRTLVGKVFRSEFYWPTAKNDAAELVQRCEACQYLSKQQHMPAQQLQTIPVTWPFACWGLDMIGPFKKAQGG
YTHVLVAIDKFTKWIEFQPIASLTSAKAVEFIQSIIFRFGIPNSIITDLGSNFTSSEFFDFCEQKSIQIKYASVAHPRAN
GQVERANGMILEALRKRVFDKNEKFAGKWIRELPYVVWSLRTQPSRALHGNTPFFMVYGSEAVLPADLKFGAPRLIFESI
AEAEATRLEDIDILEEERLNAVIQSARYQQTLRRYHDKAVRQRFFSIGDLVLRRILTGEGRHKLSPLWEGPFIVAEITRP
GSYRLTRMDGTEVGNSWNIxHLRKFY
>GYPSHAN4_MT#LTR/Gypsy 121-3732 (1 stopcodon) (something's not quite kosher here)  [Medicago truncatula]
MLIEENEDLEEEDYVVNDEGGEEEEDGENGEFLMIRRMLGNQAKEEESNQRESLFHTRCLVQGKVCSLIIDGGSCTNVAS
AHMVGKLELETRPHPRPYKLQWLSESVEMLVDKQVEVCFKIGKYEDVVVCDVVPMEACHLLLGRPWQFDRGVQHDGRSNK
YSFMHFGKKIILAPLSPNDVREDQKKMKEKYAQEKEKERKEKETEKEKKESFMAKKEEIKNAIVTKQPLYLLFCKEVVLF
TNNSNTQKFPSCVESLLQEFEALFPKEIPNGLPPLRGIEHHIDLIPEASLPNRPAYRSNPQQTQEIQSQVAELVSKGWVR
ESLSPCAVPVILVPKKYGSWRMCTDCRAVNNITIKYRHPIPRLDDLLDELFGACLFSKIDLKSGYHQIRIREGDEWKTAF
KTKYGLYEWMVMPFGLTNAPSTFMRLMNHVLREFLGKFVVVYFDDILIYSKNFxEHCGHLRAVLEVLRKEHLFANLEKCV
FCTDHVIFLGFVVSSKGIHVDEEKVRAIKDWPPPKNVSEVRIFHGLASFYRRFVKDFSTIAAPLNEIVKKNVFKWGEKQE
QAFAALKEKLTKAPILALPNFFKSFEIECDASNVGIGAVLMQEGHPIAYFSEKLKGASLNYSTYDKELYALFRSLQTWQH
YLLPKEFVIHSDHESLKHLKGQGKLNKRHAKWVEFLEQFPYVIKHKRGKANVVADALSRRYALLSTLETKVFGLEQIKSL
YESDIDFSSKFLACEHAAINGYFRHNGYLFKEKRLCVPKCSIRTLLLKEAHEGGLMGHFGVVKTLELLQEHFYWPHMKID
VQKLCERCIVCKKAKSKVLPHGLYTPLPTPEFPWVDISMDFVLGLPRTKNGKDSIFVVVDRFSKMAHFIACKKVDDARHV
ADLFFKEIVRIHGVPRSIVSDRDTKFLSHFWRTLWGKIGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRSVLTRNLRMWKE
CLPHVEFAYNRVVHSTTKMSPFEVVYGFNPLTPLDLLPMPNSSFLKHKDGKDKAEFVKKMHEQVKLQIEKKNEGYAKNAN
KGRKRVIFEPGDWVWVHMRKERFPKQRKSKLQPRGDGPFQVLERINDNAYKLELPGEYDISATFNVADLAPFDVGNSDFN
SWTNSFQEGGDDEGMVVHDTSASIQGLGGPMTRSRTKKAKEALTQLVAKVLESKPTLESMEDKMVMCIKPLEEGWGASLA
AHFI
>GYARLI1_pol#LTR/Gypsy 839-4543  [Yarrowia lipolytica]
MTETITAEPLEDLESVSVPPAEYDIINKSNFVEDTTGEPEDAGVEVHLEEEQTEEPMQLEEEQVGEQVEEPLIAARVEVV
DGKRRRALIKGDRPPISIPYCYNGTTVQALLDCGASSCFISRNLAEKLGLKMTPCKPRQVQSVHSMETTNYTVEVPVELG
KWGCDVFAYVLPQMVGQELLLGMPFFEEYHEAVDFKARTFTPDGYEVPAWPANESTTWDKHGHIKSCSLEKATQLAEHHG
AQLFLYMVREKPEGEEHEPDVDTREVLEEYADVIVDKMPMELPPKRSVEHTIDSDETARPPARASYRLTRFEWAEVDKQV
NDLLERGIIRPSKSPYSAPLVIVKKKGGELRICTDYRALNELTTKDRFPLPRIDDILDCLDGADTFSKFDLLSGYWQVLV
KESDVHKTAFSTRSGHYEYLVMPFGLCNAPATFQRLMNDALRPFLNKTVCVYLDDIIVFSRNREDHKRHVREVLDALRAQ
KFYAKKSKCELFRKKMGFLGHVVSAAGVEPDPEKVKVVEEWVPPNTPKGLLSFLGLTGYYRRFIEDYAKIAAPLTDAATL
SPTDFKWTEACQVAFEQMKAKLVSNEVMIIPTMEDTFKVSTDACDIAMGGVLQQWSPKDQEFRPVAYESTKFKKHEMNYP
TREKEFYAIIHALRKWRHYLLGRPFLIETDHQSLSYFTSQTHPPSGRLSRWLDFLAEYDFEIKYVPGKDNDAADGLSRML
AQTAMVFEPDDSLLDIIKQGYESDEYFKDVFKVLATEPVVIPKEMHNHARHFRYDKNTGLLYFASVYKGEGERLCVPRGK
ARKMLMKEAHDAPLAGHYGYFKSYERLARAYYWPRMIDHMRNHTRSCLICQTTKARRAPPQGLLKQLPVPTGNWQEITMD
FIGGIPTTHRGHNNIWVTVDRMSKMVHLIPCKTSTDGEELADMYIDRIVRYHGVPRSIVSDRDKLFTAKLWQTLQTRLGT
ELKFSTVNHPQTDGQSERVNTELIRQMKQHFVTDKNWDLWLPVIEFAMNSAKHSSTGYAPFEAVYGYIPDGPTYASTREL
TKVHHQMDAWMDKLRAISNSMHDRLIEHQRVQENRVNQHRVPVAFQINDQVLVHRKAFFDKAKYAKMYDVYFGPFPIEKK
IDTNVYKVQLPYDSTRHKNINVQHLKKFIPRPEYDINPPSTEYSQECSLHQITSLVGIDDDRYFVTWEDCDPSIASSISK
EMFHRIPKDKRDSLLDQWNQFIKTPAESEDYVDIS
>Gypsy-4_HM_pol#LTR/Gypsy 649-3651  [Hydra magnipapillata]
MFSMWKNWTHCKILLLETGKRKWETSSASCFPRQLTALPICSVHVNTYAGKALVDSGCTRTIISNKMAQKAGVCVKRNEF
MVLAVNGELVKTVGEAIVTLMVAGKQLQASVMVLKNVVNGIDAVIGMDIINRCGGVHLYDGKIEFGFVSIHTEKQFVDIK
DKDFDANFDGMKWTAKYKWKQDEPQLKNFVTQYKVKPKLIHQFNEEMDLWVENGWLKPCKIDENNKKGIVPLMAVEQENK
GKIRPVLDFRELNQYVNSHNASSDACDETLRRWRRVGDKFALLDLRCAYMQIHIDPVLWKYQRVVYKEMQYHLTRLGFGL
NSAPKIMSSILGKVLSLDAGIGEATDHYIDDIIVDLKKTSVENVVNHLERYGLLTKEPEECDGARVLGLQIFRNDKKVLC
WKRGNIIPKSEDIENEKITRRRLFSICGHLIGHYPIGNWLRIACSFTKRYSQGDAWDDLIGDQAQSWLVEILRRLEASDP
VKGTWNADGIQNGAILWCDASSIAMGVAIEYNGVIVEDAAWLRSTNDVMHINMAELDAVVRGINLAVKWDIKNLSIFIDS
VTVHGWLKSVLTESHRVRSNGLSEMLIKRRLSLLRDLIKEYSMNIIVKWVPSSKNKADVLTRVSKKWLNEISRKNVKELC
GVNIADEIRKCHSKHHFGVNRTMFTVQQRIPQVSRKDVKDCVRKCRQCSSIDPAPIKWEHGVLDVPDTWYRIACDVTHYK
GSPYLTMIDCGPSRFAVWRKMLHEDTKSILIQLDSVFREHGPPHELLMDNGAVFRSNELSNMCKKWCVQKMYRCAYRPSG
NGIVERNHRTVKRXSARAQICPLQAVFWYNATPMIGTQEDSTPASLKNKYVWRLPIHNTESHERPQKDSATYRIGEQVYV
RPVGAKCTTIWKIGNVTNILSKTNIEIDGVPRHVRDVRIVPESYGEKVSRMNSVEENESDESEFDDLHIARDEEVEESVD
EESVADEENDGIEVMDNLLPLLRRSTRERRRPTYLNDYLP
>Gypsy-3_ST#LTR/Gypsy 45-4476 via tfasty with Gypsy-20_ST, 1 frameshift and 1 stopcodon. [Solanum tuberosum]
MAEGTRMRSMDEKLAQHDELLLELRNGQQTLTATQHGIQGTLELLLERINVMERSQARGDGILPLPVQDARPARPNQTHV
PTPKWELPSFEGSNPKVWVRKCERYFNLYRIDDAQKVEGATLYLNGDVEIWYNSLVLTRGPVTWDELREEICDRFGDVLM
EDVVEEFNKLSQTGGVEEFLRKFEDLKAQMIMQNPALNESHFLSSFIGGLKEEIKFAVKMFKPTSLSFAIQHARMQEKAI
EAALKKNRAPPKTVGNVLNANNPMLPRSGAGSAPATQKPAPLRLSSEVYEHRKVNHLCFRCGERYSPGHSCRIKQLQCIS
GGSEELPLHLDDPQEVDVEVTADLDTDIPEALCLSALSGNCNGVNTILVAGWVKKRALSILVDSGNTHSFINELTVVETG
YQSCYVQPIRVTVADGNYVYCNSRCPQFTWKMGSKTFVEDLxIFKLGGYDVILGNDWMKKYNPTKFGHEKQCVTIGRKSN
KGGFKGNSGQGQISMITGSTVSKLFSKGQTIMAHLFLIQATGTEVIEEVNSSTQGVLSHYTDVFAEPKSLPPARSLDHTI
PLKPGTSPVSLKPYRYNYYQKEELEKQVEEMLSNDIIQHSQSPFSSPALLVKKKDGTWRFCVDYRGLNEITIKDKYPIPI
VDDLLDELQGLIFSKVDLRAGYHQIRMKPEDVFKTAFRTHVGHYEFKVMPFGLTNAPATFQALMNQVFRPLLRKFVLVFF
DDILVYSRSRADHVVHLKAVFEVLRKQSLYAKISKCSFGQSQVKYLGHIITSGGVATDPSKVQSMSEWPTPTTLRALRGF
LGLTGYYRKYVRNYGIICRPLTDLLKKDAFRWNEEADQAFMALKHAMSNAPVLALPDYTIEFIVETDASLTGIGVVLMQG
SRPMAYFSKVLAPRHRGKSIYEKEYMALLNAVDKWRHYLQYKHFVVKTDHHSLKYFLEQKVTTAVQQKGLTKLLGLDYEV
QYKKGAENKVADALSRQFEDKEGSMLNALVGVSSISAMVPTWVQEIHKSYEDDLEVTALISEFSVAHLGPHLFHYSSGIL
RRKGKVYVCSTGGLRQQLITTFHDSPVGGHSGQLGTYKRLAQVFYWPGMRQMVIQHVEACDVCQRSKDENVPYPGLLQPL
PIPDQAWRHVSMDFIEGLPKSRAKEVILVVVDRRTKFAHFMALSHPYTANIVATKFFKHVHTLHGLPESIVSDRDSIFLS
NFWQNLFRLLGTQLHYSTAYHPQSDGQTERVNKCIENYLRCMTSHRPTQWRQWLPLSEWWYNTNFHTSIQCTPFEALYGY
TPPHLAIGPMLDTTVPAVEDVIMKRQQLQQLLLDNLLKAQERLKIYADQRRTEREFQVGDLVFLKLQPYRQTSLALRRNL
KLSSKYYGPFAVVERVGQVAYKLAVPIESKVHPVFHVSLLKKKIGNRVVVQTTLPTTSEDGQFLVKPLQILQRQMVRTGS
VAGGKVLVQWSNLPPEEATWEDYADLKAKFPDFDTHP
>Gypsy-5_DKi#LTR/Gypsy 26-4804  [Drosophila kikkawai]
MPDVDLKQFSVLQLKNWLGALGRPTSGTKAELIARLQAISPETRGDPPTKTSSSQGDQPPNGRSAAEPADETDGAASLLV
LQEPQGGGLQEVSGDAHSMASHTSDNVEFEQLSLVDAEKATLQKIRDEIDASMAVLQRIHTEIDDANKNKSVHVXEIHDV
IANTMENSRSANIGANSDAVKINSTKVTITADNIGPDNTSVGKRIDGSXDQRMNTNVNKLLESPAASLALAKEVTMEYDG
SVCARNWVTQLQNIGKVYNLDDGCMHMLLIAKLKGNAQRWLHANATRILESADQLCEQLIMTFGVKMSKGELRSAFQRRQ
WRPEEKFAAYFEDKVMLANDINIDLEELLENIIEGIPAPALRNQARIQCFSEPMQILRAFAEVRLPERKTGGXSTKQLSG
KVAPNKDLRCANCNSKGHFAKECLKPKREPGSCYACGTFGHFVGQCPERKSANTNNYVRQIKIFFHNSFKTPLITECLID
TGSPISFSKVSSIPKEVNLETVSENYFGLNKSQLKIFGKILCYVLKERIKCYFYMYVVPNESMSHNVVLGRNFMEACQLK
LDPDTLGKVTIDPLDIKKDRKTNNDTLSHTVSETVSETVSETVSETVSDTVSETVSETVSXTVSDTVSETVSETVSETVS
ETVSXTVSETVSETVSETVSETVSKIVSPEISDTVXPTVSKTVIETVMPLNTVMPSYEETVKEIFSIDYTEDEQMSYICG
TNNDQGLNRRLEEIIKCNYFSVEKPAEPFVKCEIKLNLETSKPFSCAPRRLAYSEKEKLQKLLDEYLKDGIIQPSESEYA
SPIVLVKKKTGDIRLCIDFRKLNKVLVKDNYPIPLIDDLLDKLVNKKVFSKLDLKNGYFHVFVNKESVKYISFVTPLGQF
EFLRMPMGLKTASAVFQRFVNRIFEDLIRENKVIVYMDDIMIASKDTEEHFQILKEVFLRLAQNKLELRMDKCEFLQTNI
KYLGFIINGEGIRADDKGIEAIQNFPVPDKTQSVQSFLGLCSYFRRFIKDFSTLAKPLYDLLRKDEKFKFGEKEMNCFST
LKEKLVQAPVLAIYNYKDEVELHCDASALGFGAVLCQKKEDGKLHPIFYFSKRTTVAEAKYHSFELETMAIIHALRRFRI
YLYGKRFKIITDCNSLTLTLNKIELNPRIARWALELQNYDYELIHREGKRMQHVDALSRCTNILIVESNTFEDNLVICQA
KDPKVQEIKKRLEKDEHKLFEMRNGIIYRKCNDGRLLFYVPTDMEEHVLYKYHNEIGHVGRDKMLDSILKSYWFPSAKEK
CLSHIENCLKCVAFSPKTGKEGFLHCIPKGSKPFELIHIDHYGPVDSGRSKKHIFVVIDGFTKFVRLYATKTTNTREVVT
ALKDYFRAYSKPKCIISDRGSCFTSKEFDDFVSEFDIKHMKIATGSPQANGQVERVNRSLGPMIAKLIEPEKGIYWDTVI
DKVEHVLNNTQHRSIKQTPSKVLFGLEQRGKTVXELKENTPEERDSKKIRTEAEKNQGKXQAYNKKHYDKTARKPSEYKK
GDYVMAKNFDCTAGVSRKLIPKXKGPYVISKVLRNDRFLLKDVEGFQVSRNPYQGVWSIQNIKHWIGKKKKHD
>Gypsy-5_PD#LTR/Gypsy 133-4625 via tfasty with GmGYPSY11, 1 frameshift. [Phoenix dactylifera]
MATRGRGRRGQEVEGPNRERDLRDAANEELRREVQRLQQNLARLQTLRHNIPNHESEEEDSHDEEEETNPFHRDHSPTSN
RSRRSREFQREFDIKVDIPDFEGRAHPDEFIDWLHTVERVFEYKDVPEDRKVKIVAIKLKKHASIWWEHLKKQRAREGKR
RIVTWEKMRKVLRQKFLPDNYRQDAFLKFHNFKQKELSVEDYTAEFEYLMLRCDVEEPEEQTIARYLGGLRGEICDVVQL
QPYWTFNDVCKLAAKVEKQLKEPRRGVFRSTSRDTPFNRGSAGPSKVNSTKASLSKIPSKAESPAAGSSRSLPPTGRRCF
KCQGIGHIASDCPNRKIISLVEEDEGEAEDLGEPTYDEEVEEEEVVYADQGESLVVCRSLSAAHVEDDEWLRNNIFHTRC
TSHGKVCDVIIDGGSCENVVAATMVEKLKLKTEDHPQPYKLSWLRKGNEVKVHKRCLVQFSIGKKYSDELLCDVIPMDAC
HLLLGRPWQYDRKVIHDGFKNTYSFVKDGVKIVLGPTKIESSPKPSKGEGNNLLSKTEVEKAIVESRRTYALVVLEENEE
KRELPPIMNTLLHEFSDIVPDEIPPGLPPMRDIQHCIDFIPGASLPNKAAYRMNPKEQEELQRQVDELIAKGLVRESMSP
CAVPALLVPKKDGSWRMCIDSRAVNKITIKYRFPIPRLDDLLDQLHGASIFSKIDLRSGYHQIRMRPGDEWKTAFKTRDG
LYEWMVMPFGLSNAPSTFMRLMNHVFKPFIGLFVVVYFDDILVYNKHIDQHLMHLRQVFEKLREQKLYANLKKCHFCTTS
LIFLGFVVSSDGIKMDPSKVEAITSWPVPKSIHDIRSFHGLASFYRRFMKNFSTIISSITDCLKGGVFKWTEEAQKSFEV
LKRKVTEAPILALPNFESIFEVDCDASNVGIGAVLSQEGKPIAYFSEKLSESRRRYSTYDKKFYAIVRALDHWSHYLLPK
EFVLFSDHEALKYINGQHKLNRRHAQWAEFLQTYSFTIKHKSGLQNKVADALSRRYSLLSTMQVKVLGFEVLKELYQDDP
YFGTILTECMKGPFNHFVLQDGFLFKDNRLCIPQCSMREAIILEAHGGGLAGHFGRDKTLSLVASHFYWPRMERDIMRHL
ERCKTCHIAKSHGQNTGLYTPLPVPNSPWEEVSIDFVMGLPRTQRNKDSIMVVVDRFSKMAHFVPCSKTVDASHVADLYF
QKIVRLHGVPKMIVSDRDTKFMSHFWRTLWRKLGTKLLFSTSHHPQTDGRTEVVNRSLENLLRSLVGKNIRQWDLMLAQA
EFAYNRSASQTTGCSPFEAVYGLNPISPLDLAPIPSTQQFSGDADERAKAIKKMHEQIREKIIKQNEKYRASANKRRKPT
AFKEGDLVWIHLRKERFPTGKYGKLMPRADGPFKVLRRVGENAYKVELSGDYGVSATFNVSDLSPYHGDEDEAGPDSRTS
LFQPGEHDMGAKESPFQRGSQKEILSMAILTRVLKESPFQPGEPKRNSFYGNLFLVYA
>Gypsy-5_Gav#LTR/Gypsy 57-4166[Crocodylidae]
MQPAEMTTTDLLAQMLQAVTQLLGAQQRMMAQQGPPMVRMPKMTAEDDLEAFLEAFERQAITLGLERGYWASQLGSLVVG
KAQEAYRALSREEARDYDAVKAAILYRLEIDPEYYRRLFRAKKGPAERRPRVLLQRLRDLFGKWVNLPTCTMAGLVDKVI
MEQFVNDLEERTQRWVRQHNPESCEIAVKLAESFMAAEWYYPHERRGLGSATMKEGERRKPGSKAPVRDMVCFHCGKTGH
FARECPGRSADRGRPQGYPRGSAEGHKDLIQGEPMDCSFGTGGAEPRWERPVVKARVEGRPVRAVLDSGCAQSLIRAELL
PPGYQYQGKPVKVACLHGEMQAVHRTRVRLQVMEFQDELLVGVTPRLACDMLLGRDWAPLYDVLERVRDVETVRRAQWAQ
DDWFGEAEGDEPLTDWQDVASGPQFRQGQQEDPELQELWTRARDGERQPGAEPGGDEEFRVRCHLLYRIHQGEAGEEGKE
QLVVPGCFRQVVWQLAHANPVGGHLGRDRTLGKISRWFFWPKMGEDVARRCAACPVCQKAREDRPPRAPLRPLPVIDIPF
SRIAMDVVGPLPRSSSGHQYILVFVDYATRYPDAVPLRSVTAPRIAEELVKWISRMGIPHEILTDQGRNFMSGVLHGVCQ
TLRIKQLRTSVYHPQTNGLVERFNGTLKRVLRRCIQNDPQRWDLMLPLALFVLRDAPSESLGYSPFELVLGHRPCGLLQI
LREEWEQGPAAVSNPSRYQRDFQQRVQRARGLAADNLRYAQQRQKERYDARSREREFQPGQRVLVLLPTSTSKLLTQWQG
PFEIIRRVGPVDYEVYRPGHQRTKQIYHVNLLREWHQPEGWATFGEEEGQNPTPRGTAGRGEALMPIENIKVNNELTTSQ
AREVRSLLEEFKKIFSEEPGWTKNTYHLIQTPPEVIVRDRWRPIPHHLTQEIRKEVEKMRALGVIRPSRSPWRSSLVPVR
KPDGTLRLCVDYWRLNEVATFDAFPMPRVNELVERIGAAKFITTLDLAKGYWQIPVRPGDRQKTAFGTPWGLYEFVRMPF
GLHGAAATFQRLMNQLLAPHTEYAAAYIDDIVVFTHSWXQHLRALRAVLNELRQAGLTANPRKCAVAQKYTKYLGFLVGQ
GTIRPLKDKVQAVQTFRPPQTLKQLRSFLGLVNYYRRFVPRFSELAAPLTEALKRTPRKGLQWTXLMLRSFQAXREALCD
DVLIHTPNFMXPFTLQTDASEIAIGAVLTQKDAGIDRPVAYASRKLLPAETRYATIERECLAIRWAVEHFRYYLMGREFT
LVTDHAPLKWLSSSRIDNARITRWALALQPFKFRVEHRPGKDNITADFLSRCPEPETADGETGGKDELQHSTKLKMEGPL
RPPRGSWRGG
>Gypsy-3_AA_pol#LTR/Gypsy 2774-5980  [Aedes aegypti]
MAEEHKQNEPPYSKYATTCYINTKPNRCPYIKVEILGSPIVALLDSGASVSILSSRDVVERHGFKIKPINLMIKTADETA
HNCEGVVQIPYTYNGTTNVVPTLLVPKISKKLILGMDFWEAFKIAPALVEGNAIQPIIGLNETTINLMENFYADVEESIV
FTVEPQGQPVVREEEVVEDTSLDLPFVEDPENKNVKDITTEHDLSVEDRQELNRIIDLFKKSNGGKLGRTNLIRHKIELV
EGAQPKRPPQYRCSPHIQKEVDKEVARMLELDVIEESTSDWCNPLLPVKKASGEWRICLDCRRINDVTKNEAYPYPDMLG
ILGRIERAKFFTVIDLSKAYWQIPLEESSRDYTSFRAGKQLFRFKVMPFGLKGAPTTQTKLMNKVLGIDLEPYVYVYLDD
IIITSNSLKEHFRLLRKVAERLEAANLTISLEKSKFCQKQICYLGYTLSDQGLAVDSTKIQPILDYPTPRTPKEVRRFIG
MVSFYKQFIDRFSDLTTPITDLLKGTKGKISWSKEADSAFLKIKSVLTSPKVLANPDFRLPFIIESDASDVAVGAVLVQI
FEGVRRPIAFFSKKLSATQRKYAPTEKECLGVILAIQKFRHYVEGSRFTVVTDAQSLIWLRKISAEGGSAKLVRWALKLQ
QYDFELLYRKGSLNITADALSRGVLTVDLVDPEYEELKKKIISNNVKYKDFRVVQDKIYKIVKSRFNDPRFEWKYVPTNR
ERIKLIKEIHDSMHFGRSKTLKKLQERYYWPLMENEVRKYCQGCDTCKRTKYPNTNQKPLMGRQKVASMPWQTISVDFVG
PFPRSKSGNSVLLVVTDLFSKFVIIQPLREAKTKPLVSFLENMVFLLFGVPEILISDNGVQFKSKEFEKFLNNYHVTHWK
NANYHPANNPTERVNRVIGAAIRTYLKDDHKEWDRDIQKVAMAIRTSVHESTSFTPYFVNYGRNFISSGAEYKRIRDTNT
DISYEPVEINENLKTIFDTVKINLKKAYERYAKHYNLRSNQTLPSYEIGEVVLKKNFFQSSKSKQFSAKLANPFSPAKVV
GKIGSSCYDLEDLQGNRLGVYHASHLQKK
>Gypsy-2_CR#LTR/Gypsy 78-2773 via tfasty with Gypsy-8_CR, 2 frameshifts. [Chlamydomonas]
MANQVDSDSESSGSVGSTRATTISPSSLFAIPLFTPSSEDPSNWIDTIERMGRVFGWDDTLKLFIAKCRLSHDARIWAQA
WKLRDSGMETNMETNTWDAFCRAFLARFAVKETTLYAQLAACRQKANESVREYSDRFRHLLARLRIKPDTIQMYNYLRGL
HSSIYSQVYLMRPSSLETAIEDAIYASEVEESARNPNNFSQQIPLPISRTDYRPADQRPRPSNFNLSRRDEKFRSQEERF
NNRSTRPLPPPSASRVSQDLEKDIESIQNKLANLTLALRQQGEVATYMHDRCESEGDDGWEDAECYYSHGCGYDSDDWDA
AMTVILSYMHVSVLCILLSKRVSDFEPIRLPNKRVPVEPTQTLPMEINDRPATRRFSAARTAGGAFGSPTPLKETPPPDT
RATDSPQPDTATAFRVTNTATPARRERTDKGLGAGGGRATTGYRDIGRAPRGPGGAATRVDPIPFDASEDETTQRIVADV
VSKINKYSIPLGAAVRVNPVQIYSKVGGKLMGVARMVGTRPRDEPASRDANLYESHRCKDDVLRPLSDFDVGWPLPVSVP
TFHDAEPASKAPTHTTRGARVPGLARVTSGYSPPSAPTYQQTNTLPCYNLDTRPQKFSVCRGYVRLTNARGEKEVIRAVI
DTGASYSVVPVYILRRLDLMPYLAESRAMFLNADGLKKKATGQVRGMQVSLGGDLTYTMDMYVSQAQNYELLLGMDFLYP
LKASIDFEGQVLEFTNDSNQRSTIPITCVVEEAAAPRTTSLREECPDGVPEIYMLDGDSPATKALVAPDETAGVISPARR
HSRIISFRARKRTVPADHMRMRQVFRCAKPIVSLAPCGPCFHSKIENSTGNGSYPYLPHRQRSRQVTWLCPQHPSPKGWC
GPDKGPVWTASPPVTLT
>Gypsy-2_BG_gag#LTR/Gypsy 147-1721 [Blumeria graminis]
MSKEGETGSSASPSSKIIMSVTVEKKFKDIDTRLDNIDSNLESLGSSLASIKQALDQLSNNRTPRKNTEPEYDYEPPSMQ
AQEALIQQEIKAKARLPDGKINIHHVPQEEAPRPHNLGEKYVQEIWPEVKLRKQIIALGILYDRIPEDAYRIRVVLERSW
EMHLATDTKIFLKLREIQRSLVQAAVPYQLWASKLSPLLDGDFQAVSRYIETNNATWTQALEAIFECMERHDTLRRPVVT
FARMAPYKEESYLNFAWRIRAAFYALPVQSQESHYVRDMLHEIMKMYMPRAWAQLLTRISILTNPELIEEVIVLAGNISR
FEVEDHIYTRPSVNVTLQGQASPYYQLQVSESTTTTPGKAEIVQPDAQTTHTGLTIIDPRKDNRAVHITREGEEESAYAA
RGGDVKCYNCGKMGHMSKDCRARKQSSNQGSSGGSHSEPVTIKGTLFHENKGNNQAFGKRFRDQFRKVVTRGRPKNTSKG
RGGSAFVTGAPDDEDDLPEDQWDEDMVEDTLTQLYTAMEADAAEE
>Gypsy-2_DP_pol#LTR/Gypsy 1092-4934 [Daphnia pulex]
PPRSPCKKLPYSFILSEAVKLAAVVERGNTTDSVFSIPQLDRTKLVLKNVLFSNRNVEAIVDTGSGVTVISPNLCTALKI
PIRRWTGQDVVLADGKRTRPKGMIDAEFTIDHRPVTVSALVFDINGYDLLLGNDTLRQLQSIQVDYFPDMASLTIGDPDF
MCNNKDNYVFCNKSCMVPAHTMIVIPIKHARSPKTGAEKLEMIEFSPKVMNDKGLSIGRFCYSSRAPPETVQLINFSDSP
QWIQEGVALGKIFEVQEASDTSAAKTETEALDFDRSINQDLPLVDRVKFKNLLGRYSYCFSAHDDDLGSSNLVQHRIDIG
DHLPTHQAPYPSSWKQREIIGTQVQRMRRAGIIEPSQSPFAAPVVLVRKPDGSWRFCVDYRKLNAITVKDVYPLPRIDDA
LSRLEGSKYFSIIDLQSGYWQVQMEPSDREKTAFITADGLYQFRVMPFGLTNAPSTFQRMMDVMLAGLKWNTCLVYLDDI
VIFSDSISQHLQRLEVILQRLAQANLKLKLNKCSFAATQLKILGYIVSGNGLSPDPSKVNAVQAFPTPTTVKNVQSFVGL
CSYYRRFIRDFAVIARPLTELTRKNQIFRWTAEHETSFRSLQAALTSPPVLGHPDYRLPMEIHCDASDYGIGAVLVQQQT
GGERVLAYASRLLSHAECNYSITEKECLALVWSTQKFKVFIWGIKLKVVTDHHALCWLMRKRDLAGRLARWSLQLQDLDI
EVVYRSGRLHTDADALSRHPIDPPEPEGEIPMLLISSATHSKPAVIKTLQLECDWCNPIIQGLKDEHPCHRVHRLIRHFV
LKKDLLYHRIIRNGRAYLRLCLPPALQKQVLLACHDDVTAGHLGVTRTLAKINQRFYWPKMIQSVSQYVRSCEDCQTKKK
PKERPAGYLEPVQARLPFEKIGIDLIGPFPLSTLGNRYVIIAVDYLTKWVIAKAIPTATSKEVVDFFVRRIVLQHGAPIN
VISDRGKCLTSNFTNELFRALQSNHLVTTAYHPQCNGLVERFNHTFAEMISMFVNSKHSNWDDVIDHVVFAYNTSKQEST
GKTPFLLLYGREALLPIDAALGNNPNPDANHIQLLQQLPALREKVIRRLAWIQHRQKKRYDKHRRLKSYSVGDLVLVYRP
LRKKGRSEKLLHSYHGPFPIVKKLSNVTYVIKCKNSRKNNLDRVHVCSLKPFHPRLSNQNITFPSCDPVLPTEKGKSRTL
PKSRERSVVKGKSRTLPEIREETIVNGRNLSDNFTDRGEKDYIPNQPQIPSIATKPPRVIYDNLRSRRELKTVERLGITK
>Gypsy-2_Gav#LTR/Gypsy 35-3406[Crocodylidae]
MHHKTVVRPYEGKSPWVHXEREKREQTLAPDPESQQQVLDRLRQTIQGLQDQAARQQALLANTTGSIHPRSTTRVGMCGY
GARVDSEAGDEPPALTVEVTMEGKKVRAMLDSGSLQTMVRSDVLPAREREVADHVIVQCWCGDSIEIDRVGAILQVGNRT
RQMLVGVAERLPYPVVLGCDWPELLEEIASVRPGERAEGFAGETEQPPPEEEAEQEVDVAHLWEDEHFQLEQSREADFRY
ALQEHLAQRNGEVLRPELMKTTPRFEVRNDLLYRIEQGKPEGGEVVQLLVPRRYRRALLKVAHELPMGGHLGRDKTEARI
RARFFWPGLLREVARYCASCPVCQKVNPRHPPKAPLIPMPLVEVPFERVAVDIVGPLPRSSTGNQYILVLLDYATRYPEA
VPMRTVSAPKVANELLKIFSRVGLPRELLTDQGMNFTSRVFEGVSKALGIKHLKTAVYHPQTDGLVERFNRTLKQMLKKF
VVESPQNWDKMIPPLLFAVREAPQASTGFSPFELLYGRQPRGILDLIKESWEEQHSKDQNLIQYVIQLRERLEAARSEVL
GNLREAQQRQVRHYNRGARERKFDLGDRVLVLLPDHESKLLARWQGPYEIIRQVGPVDYEVYQTDKQKKKQVYHVNMLKK
WEDRECMYLALHPEELELGPSLTEGSGPGDVELAPRLSEEQRRQAAELVREYGDVFRETPGEARGVVHRIKTPPGQVIRE
NWRWIPQRLQSQIKTEIEMMLEKGIICESHSDWRSPIVAVPKPDGKIRLCIDFRKVNAVAKFDAYPMPRVDELVENIGQA
RYISTLDLTKGYWQVPVAPEDQEKTAFATPWGLFQFRRMPFGLHGAAATFQRLMDRVLAPHGGYAAAYIDDIIIYTEDWA
EHLTALRAVMQDLRRAGLTANPKKCTIGKEETQYLGFLVGSGKVRPLLSKVEALRKYRAPHTKKQVRAFLGLASYYRRFV
PHFADLVVPLTEMIKAGAPTKVRWTPDAEKAFRAVKDALCLQPLLYTPDFNKPFLVQTDASKVAIGAVLVQREGEEERPI
AYISRKLHPPERNYATIEKECLAIKWAVETLRYYLLGRRFTLITDHAPLRWLQSMKTDNARLMRWALSLQPYCFEVKHRP
EPRM
>Gypsy-2_DWil_pol#LTR/Gypsy 2600-5542 via tfasty with Gypsy4_Dpse_pol, 3 frameshifts. [Drosophila willistoni]
MDTGASISCVGGSFAEELLAVKTEYRPMSNKVNTADGTPQQIVGKISTEVNFRGNSKILKFYIVPGLTQDLYLGIDFWLA
FDLLPSGLSVGPIQIASLSVEDTAQRMLDSNQKQRLSECMGLFPSFAKLGLGKTQLLSHLIDVAGAAPIKQRHYPMSPAK
EQLIYEELDRMLKLGVIEESQSAWSSPVVLVSKPGKHRLCIDSRRLNAVTVKDAYPMPIIDGILSRLPKAEYITSLDLKD
AYWQIPLQPESRDKTAFSVAGRPLYHFKVMPFGLCNAAQTMSKLMDKIVPPHRRHQIFIYLDDLLIVSDSFDEHITLLTE
LSKCISDAGLTINVEKSHFCRKNVKYLGHIVGEGTIKTDPDKISAIVDFPTPKSVKQVRRFLGMAGWYHKFIQNYAAIAS
PITDTLKHKRKFIWTSEAQSAFEDLKTRLSQAPVLHSPDFRKPFSINWDASHTGVGAVLTQLTEDKDEVPIAFMSKKLNQ
AQRNYSVTEKECLAAVLAVKKYRAYVEGQEFSIITDHASLKWLMSQSDLSSRLARWSLKLQGFNFTISHRKGSKNVVPDA
LSRVFTPDLAVLDSDLGIDLNSVHFLSPEYVELKTKVEKNPQSVPDVKVMGNLVYRRSEHFPGERLADDHCWKLWIPKGL
VEQLKSAHESPLAAHSGINKTLEKLRRYYYWPNLVSEVKEFINRCEVCKATKHPNYTLRPPLGKSGETSRFFEKLYVDFL
GPYPRSKSGNIGIFIVVDHFSKFPFLKKVKKFTAEVVTQFLEEDLFHCFGVPEIIVSDNGPQFRAHHFNELLQRYKVRHT
YTAAYAPQANVSERVNRSVLAAVKAYVSPSQSDWDEKLSSIACALRSTIHSAINTTPYRMAFGQHMVTDGSVYQVLRNLE
LLEDRAVRFSRDDSFEIMGTKAKEESRKQHIRSREVSFSVGQEVFRRNFQQSNFSKGFNSKLAPPFVKARVRRKLGNAYY
ELENLQGHVVGKFHAKDIKQ
>Gypsy-6_HM#LTR/Gypsy 183-5742 via tfasty with Gypsy-15_NV_pol, 2 frameshifts and 5 stopcodons (these can be avoided by introducing 2 small introns; this would be odd for a retrotransposon though)  [Hydra magnipapillata]
MTRLRSGKICPFVEPTHRLIAGNNSHTSLNNSDSDSADSLELSDTNPFKTQNSRSPEEKNNMSLEQILERLTLKPTQEIH
PKIFKGTETEDVTEWLASFGRIAQHNQWTEMRKLLAFPLYLEGSALVYYETLPAHIRNDFNQIQEHFRQYYNNANIAWNR
KMELFGLLQDADLASYITTLDKLSQQLGVDDETKLNLFIKGLKPHLRNALKLKQPVDYQAAVAFAKLQDTVGSDSTITRL
EAKLDALLNSPQHIAAATYREHPILNQRIGELQTEIASLRRNNNRPSQHERFRPNGRNLRTSDGQVICNQCLKVGHTQRS
CSEKIAPLSGRNHYQHASPQPHHWNHDTQNPVSFRNNSYPNRQSRHNEPRNSPHLDSRIPHRHTNTLESDPEEEPGSEIW
GKVYKTKVLILMDTGARCSVLDETIFENFRNQVNRPLPYYGTLRTANGAPLHVLGKTVCPINIGGYIFEHEMLIAKNLTH
PVILGYDFMSQFNVKLDCGNHRVTFEGMFDIEMISKPIDNKFSTGIIVDDTPIRRIPQIDKFDVKWLPAPEPLLKENPLI
NQPTNAQFECKIQRENLTPKSDAPRTPDEAKEFQPLLSDRRPYPAVSIDYQDRFNNTKPNSNPVDLSITPICVTKEIKAV
PKCETILTIAHALKTKGDCLFIPETNLFEDQNVHVFPTITHGVSNQVKLHVVNPSSDYVTIGKNKVIGVVISLPTKISEE
YNAGLPDGLIDLLESKTNAAALNQEERLQLLTLLKNNQDVFGQGLHDIGQTDVIQHCIDTGNAQPIRQRPYRLAEAQRKS
LDKHVEEMLANDIIEPSVSPWSSPVVMVPKKDGNFRVCIDYRKLNNVTKKDTYPLPRIDESLDMLHGAKYFSSLDLLSGY
YQVRLDDESKEKTAFTSHKGLYQFKVLPFGLSNAPSTFQRMMNYILRDHLYKHCMLYLDDILIYSKTYKEHLEHILMITE
AVRQAGLKLNLLKCTFCTTEVKFLGHYINADGIKPDPENIKAVKDYPIPKNIKDVRAFIGLCSYYRRFIKGFSGIVLPLN
NLLKKDTSFKWQIDQQKSFDQLKEALTTTPILVFPDFKRPFIIYSDASGEALGYVLAQCQGDSEKVILYGGRSFTNTEIK
YSTTEQEALAVVVAIQKCRPYIYGQRFKIVTDHNSLKWLMSIKDPTGRLARWSLMLQSYDFEIEYRPGKMNGNADGLSRR
SYDTVATLTVPGRPIDQVVKEQRNDPYYADLVSYLANKELPEDLKEAKKVLALEGNHYLDENGLLFHHESKTSRNLTQLV
VPQSLRNELITWAHDEPCGGHFGVTKTYEKIRTNYYWIGMYNDIQTWVKSCTTCAQRKRNPTTSKAPLLPIPVEGPWDVI
AADCLGPFPPSLKGNRYIVVFGCLFTKYVEAFAVPTIAASSIAEIFVDNIVFKHGAPRRFLTDRGSNFTSKLVKEVCEIL
NVKKSFTTAYHPQTDGFVERINGILAQSLSMYVASNQRDWDVHLPAAVYAYNTSISASTGETPFRLTYGRDALLPHDTTL
LPRKDPTDNTDLLIQRFVSDLRLLRNHRERKYSKSTDKNETTLRSNNxIISDLRLSRKLAKENIQKAQAKMKLHYDQKAK
EYPFQVGHKVWVYTPITKKGLTKKLTSFWHGPFRLIEKTSPVTFKVENMNNKELPTPIHVSRFKQWFGYEEKPTTDLALN
TEVLTEATETMDEFCFEDNxPxNTGRSNNLAPxKLNRSSxQNLPENQIDSTDIYKMEKIVKKRTRGGKIQYLIKWEGYPS
SQNTWEPEENIFDPQVIQKYINSKKTSKSVHISAITTTNLNSAYVRRKDQTNCRVMPKVTLQSKQIVEYYGVWCSLLPTF
ITHVSTRLIYWRSI
>Gypsy-9_BG_pol#LTR/Gypsy 1815-5800 via tfasty with Gypsy-4_BG_pol, 1 frameshift. [Blumeria graminis]
LDKNSLLGYLVNIQHIDLGKIMSEKTYTLQCSFSGNSRIVDGVSVLPDTGANGFAYIDSRCAYAISKCLGEKPKNLGYSI
QSKGFDGKKGPVISQYILLSLWINGRRLDNLPFLIVELGSHDVILGSRFLAHFDIMIDSRQRRLVWPTDHPETLSFSSPI
RTSLQYLLTDRPKPFKIHQKDVTRRDSLFNKEDRMAMYGARSTKRSVQDKKSFHLASRSALPIQISKLNEECNTNESVSD
DSAGKNLKLTNIRSKSDLDLCQLSTPALHSSPGCTDHTSSFLSLKEIRHEIEEEEDDPIVCESQDLELEKIVPSYYHDLL
DVFSKFASNLLPPHRPYDHKIELENLQQLSAGPLYPMSSEKLKAVHKYILENLDKGFIEPSKAPFSSPVLFVKKADSSLR
FCIDFRKLNAITKKDRYPLPLIDETLARLNKAKIFTKLDIRQAFHRIRMHPDSEELTTFRTRYGSYKCKVLPFGLTNGPA
TYQRYMNDTLLDYLDVFCTAYLDDILIYSENESEHCEHVRKVLVRLRKAGLQADIKKCEFHVRKTKYLGYIVCVDGLRVD
PDKISVVENWLPPKSVKGIQSFLGFCNFYRRFIPEFGRVAKPLINLTKSEVKFNFDENCHVAFEGLKSALTSTPILKHFD
PDRPSQLETDASDGVVAAILSQRYDKYWHSVAFFSKTMQPAELNYEVHDKEMLAIVRGLNNWRAELEGSPYKIDIITDHR
ALEYFMTSKNLTARQARWAELLSQYSFQIKYRPSKQNTSADALSRREQDTGPQDQVKREIRYKPVLKNSNLSKEVKGDLH
ICLMESIKVIDAIIEANRTHDSVHDMREQTRSNNNLRMDKGVLFFKDRLVVPDKDNLRTDLIRDIHDQISTAHAGRNKTY
LELKSRYFWNNMRQDVERYCRNCHLCRVHHAARDKTPGLLKPLPIPERPWQHICMDYMDMPKDKKGFDKVNVFIDRLSKV
SVTLPCKKGITARDTAELYFTYVYRYYDLPDSIVSDRGAQFISAFWTYVMEILGVQLRLSTAYSPQTDGQTEIMNQYIAH
RLRPFIDHYQDNWSDLLPAMDNAQLTLPHDSIGMSPFQLSRGYTPRKSYDWNLPAHPKTAREKLALKDAEAFAHKLQETW
KVGQEIMRRSQEKMVIQANKHRREPDFDVGDRVYLSTKNLWLQRSSTKLSPKFPGPYKILSKKGHSFKLDIPKQWSNHDV
FHARYLRKAADDPLPGQIIPQPDPVSITGDDEWEVEKILDVKLLRGKLKYCAKWLGWDDDPQYYPASDFMTAPSKLIEFH
KQYPNKPGPPKNIMQWLSAWKNGEDDYSILSDDTPMNSSLRTSFFGRGG
>Gypsy-8_NV#LTR/Gypsy 100-4068 [Nematostella vectensis]
MAASHTIGNMQPFDEATETFTCYVERLELFFDANNINEDKKTASLLSLIGPKTYNLLRGLTSPRKPKDKTYQEIIEILEG
HLSPPPLEIAERYKFHQRNQALGEDINAFVASLKQMTEHCNFGEFLPQALRDRFVCGLANESISKKLLCERDLTLEKAVT
IAKAMEQAGKGANAFHQAHTIPETGAQTPESARPHQSRVFKMEQTPQKCMSCGKNTHARRDCKFYNAICRICNKRGHISD
ICMSSINRKKSTPSKTKPTHCVEQEISEGEEDEIQCLHIFKCDTTSPPILVQVNIEGSPVSMELDTGSSVSIIPRNVYES
TCKHLELKPAKVKLRTYGNEIIVPMGVVSANISYNDQCCEAKMYVVDGPRVALFGRSWLRLFKLDWPSIKLVQGKNTALS
DLTEKYQDVFSDELGCLKGYAAQLHVRDGATPVHQKHRTVPFAIRHQVETELENLEKQGIISPIPNSEWATPVVPVVKKS
GGIRLCGDFKVTLNPELVADSYPLPTLDDLQEKMNGGSFFSKLDLTKAYSQIPLDDSAKQFTTLTTHKGLYAYNRLPFGV
ASSAAIFQRQMDRIFKDLPQVLCYQDDILVTGRDSEEHLTNLEEVLRRLHANGLTAQREKCEFMQPSLKYLGHVIDKDGI
HPTSDKVEAIKTAPSPQDVTQLRAFLGLVNYYQKFLPNLSQVLQPLHQLLKKDTKWCWSAKCQKAFTNVKSMITVDNVLV
PYNPDLPIILDCDASAYGLGAVLSHQIPDGTERPIAFASRTMNSSEKNYAQIDKEALSIVFGVTRFHIYLYGRNFTLRTD
HQPLMAILGPKRGIPPIAAMRMQRWATKLSAYSYDIQYRSSNDHSNADALSRLPQHKAPKDGYFDLADLYQVEQMDRLPV
TADDIREHTAADPLLHEVHDYVLNGFPRTTPSDNMKPFLTCAPELSLHEGCVMRGHRVVIPSALRARTLDELHESHLGIV
KMKELARGHIWWPGIDKDIEDLAKSCGPCNTTRNAPPSQYHPWAYPQAPWERIHIDFAGPVDGIHFLVVVDAYSKWLEIV
PMRTTTAPATIKVLHDLFARFGLPIHVVSDNGSQFTSEAFDKFMKQNGVKHTTTAPYHPKSNGQAERFVQTFKLAYEAGQ
GPPSQIIADFLLKQRNTSNATTQQTPAKLMLGRNLRTRLDLLSPYRPASPKTAPALSQPSRCFTIGHKVWYRDFSVSGGK
WSPGCVTTKIGNVMYEVQPDKFPQQHVRRHADQLCERTAPPYQDSMSHRDHQLLPMTTPAAEPLSCTEGDGDATETLNPP
QTTRQQNPPTISEEVPEDAGEPDMPRRSSRANKGIAPDRLNL
>Gypsy-9_Crp#LTR/Gypsy 174-3995 via tfasty with Gypsy-29_NV, 3 frameshifts. [Crocodylidae]
MQALKVAPPEQFDFQSPGTWPRWIRRFNRFREVSGLDKQSEAYQVSTLIYSMGDQADEILLSLPLTDAEKKQYAAVIEAL
TDHFLGKRNVIYERARFNLRKQEPSEPVDRFITSLYTMAESCQYGELKEELIRDRLVVGLRDTELSQRLQLDPDLTLQKA
ITQARQSELVKQQQREIRSDSQSCQALVNMDAMHTVKKLQTNTNRTDRHNEHREWSHRRPQQQTSGKGGQCHRCGQTPGH
SHAQCPATEEICRRCKKKGHYASVCRSTTGVREVTEQDAEDCTVLLDEVTESSSDPGVWMTEIELNGQPMPFKIDTGAAV
SAIPDSYYSPHRDGILLSPTKQLRGPGDTTLKVLGSFNAKMTLKRRCIDQEVYVIGNLAVPLLGLPAIQALQLVHRLDEI
ADQKSLEQYYRTKYPRFFSGLGKMSGEYQIRLKADAIPYALTTPRRVPLPLMDKVKEELTRMEEMGVITKTEEPTPWCSG
MVVVPKPNGKIRICVDLTQLNKYVCRERHILPSVEHTLAQLAGAKVFTKLDARAGFWQIPLAAESSKLTTFITPFGRYRF
KRLPFGISSAPEFFQFRMSQILDGLEGVLCHADDILIFGTTKAQHDARVDATLRKLQEAGVTLNEKCTFATSQLMFVGHW
ITPHGIQPDPSKVAAIKGFPEPKDVPELRRFLGMATYLGRFVPNLATITKPLRDLLSDKNIWLWGPLQQSAFNEIKSILS
SSLILAQYDPTRETRIAADASSYGLGGVLQQRQEAGHWAPIAFVSRALAPPETRYAQIEKEALAVTWTCERLRTFLVGLT
FTLQTDHKPLVSLLGDKPLDELPPRIQRFRLRMLKFTYNIVHIPGKELQTADTLSRAPLQTPLSPEELRQERDIAVYVDV
IADGIPISASLQTRIQEAQEADSSCQKIKKYCLEGWPQVRFKDCELAKYQQERLNLHVVRDLVMFHNRVLIPSALRQEIL
EKIHDAHQGITKCQARARQTVWWPSICDDIQNWVASCKVCAQHRPVHVEPCLMTDLPDHPWQMLGADLFTWKGSVYLVAI
DYYSRYLEMAQLQSTTTERVIMALKSIFARHGIPSVLRTDNGPQFSGAVFKQFAAQYDFQHVTSSPHFPRSNGEAERAVR
TVKDLLQKNEDLYKALLIYRSTPLEHGWSPAELLMSRRLRTTLPSMSNDLVPKLVDPQEFCEKDKQIKDRQRRNYDTRHA
SRHVPALSPQQEVWIPEPGVQGTVQARADTPRSYWVETPSGLLHRNREHLRQIPPVYHTRSGRASVPPKRLDL
>Gypsy-9_Gav#LTR/Gypsy 66-4190[Crocodylidae]
MEHQPGLPGVETLQQAMNLMAQVLQQQQQQAMRQTSLQEHLLQQQLWAQKGPWDFRMPKMSKEDDPEAFLETFERAAIAA
GLEKTKWAGHIGTLLIGQAQAAYRAMTRGDALDYDKVKAEILRRLDITPERHRQAFRERKSGEGRTPRILWQNLADLLSK
WLRPEATSKEEICDQILLEQFITDLEEDTQKWVRCHCPTSSREALRLAEQFDMAQGDRRRSKGTKGQEAATRRCSESKGG
RREGPQGLTCFSCGRKGHVAKNCPQDPQTRFTKDLDFSETRSGAGTMPEVESMDCGVGSHGGAQIQPLPEVRAWVEGSPV
RAVVDTGCAQSLVRPSLVRWNHAQRCAGVSMVCLHKRKTHVDRRLLEVQVQGIRRRIPVGLDEEILYPMILGRDWPEIFE
VITSLQKCETTREGLMGTEANASDDMELEALANNSQFREAQERDDELRPFRENESPGVDTQVNPPERGKTVPRVEIRKGL
LYRIKRGRVEGEEIAQLVIPRPYRELLLRLAHRNPLGGHLGKHKSEARLTQWCFWPHIYEDVEEYCKTCEVCQKASTHKP
PKVPLQTMPIVREPFTRVALDVVGPLPRSAAGHQFVLVLIDYTTRFPEAIPLRAVTGPKVAEELMKWVAKFGIPREIITD
QGPNFMSSVLKALCKVLQIRHLKTAVYHPQTNGLVERFNGTLKGMLRRCAQDEPRKWNVLVPPLLFAIRDAPQTSLGYSP
FELTFGHRPRSLFDIVREGWEADPNPGKGASEYVRDLRERLQVARGIAQANWEQAQRYQKERYDAQTKGRELKVGQKVLV
LLPSSTSKFLTYWQGPFSVVRRVGPVDYEVLRPGAKRERQIYHINLLKEWHEAEGLLISPDPEADEFGIQVRDNLGKPTE
GDLIPVGSQLEIKQRQQLMGLVKEFRDVFTGQPGKAAGVEHRIITKEGQIAREKWRRIPYHKSQPIKEELEKMLEQGIIT
PSRSPWRSPLVAVEKPDGSLRLCVDFRKLNALTQFDAFPMPQVSERVERIGQAKFISTLDLSKGYWQIPLRREDQPKTAF
GTPWGLFEFKRMPFGLNGAAATFQRLMDWVLAPHQGYAAAYIDDIVIYTETWEQHLKALRAILLELRQMGLTANPKKCAL
GKEETKYLGFVVGQGQVRPLADKVAAIREYTAPTTKKXMRAFLGLASYYRRFIPKFAEIASPLVETTKGRRAGSIEWSEE
RRRAFEELKRALCQEVILHTPNFALPFTLQTDASAYALGAVLSQEVDGLERPVAYASRKLNDQEKRYSTIERECLAIRWG
VDYFRYYLLGREFKLITDHAPLRWLNTAKTDNARIMRWALALQPFRFWVAYKPGKANVVADFXSRCDEGCPETQGGASEG
RRXTRRTLSSVLRGG
>Gypsy-9_DAn_pol#LTR/Gypsy 2355-5663  [Drosophila ananassae]
MHKKLPQEHCNTAFQSKCSQPTDRLGGPAVVSGGGALRVENSPSGDAGLQVWHTKLEKFRRLHLPMLKNEGRSVSRNSRR
QKNYWRTIKEIASIRKNVGDNRPYAEVTLLEKKRRGLLDTGAAISCIGGQLAEEYICSRKPFKKVLAGACTADGNKQQII
GKFKTEIEYKGIKRELEFHIIPSLRQDIYLGIDFWTAYELLPPTLAISEISGDAEQHSISRWQQLKLEKVIKSFPSFAIS
GLGRTSVLSHAIDTGSAKPIKQRHFPVSPAIEKLLYAEVDRMLKLGVIEESDSPWSSPVVLVQKPGKVRVCLDSRKVNAV
TEKDAYPLPQIDGILSRLPKANFISSLDLKDAFWQIPLDPLSKAKTAFTIPGRPLYHYKVMPFGLCNAPQTMTRLMDKVI
PASLRNEVFVYLDDLLVISDTFDKHLEVLETVAKRIREANLTLNVEKSKFCRRTVKYLGHIIGEGGIRTDPDKVSAITNF
PLPTSLKALRSFLGLAGWYRKFINNFASVSAPLTDLLQNKRKFVMTQEGKEAFEKLKAMLGSAPVLQTPDFERPFFIHCD
ASKTGVGGVLVQKSISGDELPIAFVSKKLNKAQRNYTVTEQECLAALVSIKKFRAYVEGLEFTVITDHASLKWLMSQNDL
NTRLARWALKLQGFRFAIQHRKGTLNVVPDALSRVEHEQIAAIDFKNGLLVDIDSEHFKSAEYIQLMEGIKSNLDNFPDL
RIVDALVYRRTEHSKGELLNDAYAWKLWIPKSMIQEVLKKSHDDPLASHGGVHKTLERIRRYYFWPGMVNDVKDYIAACE
SCRMTKAPNRALRPPMGKAVESQRFFQRLYIDFLGPYPRSRSGNIGIFIVLDHYSKFVFLRAVKKLTAEVVLKYLEEDLF
HTFGFPESIVSDNGSQFRSEKFQGMLRSHRITHTLTAVHAPQANASERVNRSVIAGIRAYIRSDQKDWDENLSKISCALR
SATHSGLGSTPYYMVFGQQMITSGATYSLLRKLAMLEDKAANFSREDSLEVIRKKAAETLGKQHERNERHYNLRAREVSY
KVGQEVYRRNFKQSCFQAGYNAKLAPLFVKARVRRKIGDSIYELEDLNGKLVGRYHGKDIRQA
>Gypsy-8_DPer_pol#LTR/Gypsy 2277-5570  [Drosophila persimilis]
MQSKKLGSSCTVDQCTQTDGIESHQYGVTSSKTNSLPLQPAMSQIPDLPTRTEIENGSQRSLRMKLRRCAYNVARKQERK
VLLSAVVGNAQDIRPYAEVQLLGRTVTGLLDTGATISCIGGELALKVSHATVKTVNASVRTADGAAQKIVGKISTPVLFR
DETKPITLYLVPSLAQELYLGXDFWAAFKLLPPGVVTQNAKPEVAALAKDDHMHISLTDSQQAMLSEAIQKFPSFAKEGL
GRTSWISHDIDIGDAKPIKQRHYSVSPAVEKVMFEEVDRMIALGVIEESDSPWSSPVVLVRKPGKVRICLDSRKVNEVTV
KSAYPMPLIDGILSRLPKAEYISSIDLKDAYWQIPLTPDAREKTAFTVPGRPLYQYTVMPFGLTNAPQTMCKLMDKVIPS
QLRHEVFVYLDDLLVVSSTFEIHVRVLSELASRLKQAGLTINVEKSKFCLKEVRYLGHVIGDGTIKTDPEKVSAIREFPT
PRSVKQVRRFLGVTGWYHKFIRNYAGLAAPLSDTLKQKRKFEWTNEAQLAFEDLKGKLCSAPVLHSPNFRSPFAIHCDAS
HTGVGGVLMQKDVEGNEVPIAYMSRKLNQCQRNYSVTEKECLAAVLCVKKFRAYIEGHEFVIITDHASLKWLMSQSDLSS
RLARWALKLQGFDFQIHHRKGVNNKVPDALSRAYTEDLSELQVDSLLDLSSPQFHSVEYEDLKTKITANQTKMPDVKVID
GFIYRRAEHAVGEKVSDDLCWKLWVPSALTSVVLRQAHEHPLSSHGGIHKTLERIRRYYYWPNLVTDVKAYVNQCEVCKC
SKHPSYCLRPPMGKTQGTNRFFQKLYVDFLGPYPRSKSGNIGIFIVLDHFAKFPFLKPVKKFTADSIIRFIEEELFHCFG
VPETVVSDNGVQFKSQVFQSLLQNYGVKHMFTAVHAPQANASERVNRSVIAAIKAYIKPDQSNWDEKLSHIACALRSSTH
TAINSTPYRIAFGQHMVTNGSSYQLLRQLEMLEDRTVQFSRDDSFNIIRQKAMHSAQQQHSRNEKVYNLRSRDVSFVVGQ
EVYKRNFQQSNFSRGFNAKLAPTFVKARVRKRLGNSYYELEDLHGRLLGKFHAKDIKQ
>Gypsy-7_Gav#LTR/Gypsy 46-4185[Crocodylidae]
MQPTEMGPADLLAQNLQALTQIVGSQQRLLAQHSPSALGMPKMTADDDPEAYIEAFERQAIVAGLDKRYWASQLGALVVG
KAQAAYRSLTRDEAQDYGAVKAAILYRLELDPEHYRRLFRAKKGPEERRPRVLLQRLRDLFGKWVKLXTCTMAALVDKII
LEQFINDLEERTQRWVRQHAPETCEEALKLAESFAGAEWHYPREKRGPTVTTPAPREVERRRPGYRPQGGDMVCYHCGRV
GHFARECPGRAAERRRPTDISRSLREFPGEQTTGEPMDCSFGTGEGXPVWERPVVRAWVEDRXVRAVLDSGCAQSLIRAD
LLPDVSSGRIEPVRVSCLHGETQTLRRVRARLKVMDYRGELVVGLAPRLACEMLLGRDWAPLYEVLERVRDVEVARKEMT
QRDGWFGDAEGGEDTSTERDTEVVDWRDVASGPQFRQAQEEDPELQDWWTQAMDATQPPAQPSDSRCRFEVRNHLLYRVT
PEKGEGGSRVQLAVPRCFRKAVWQLAHATPMGGHMGRDRTISKIARWFYWPRLGDDIARRCAECPICQKTREDRPPRAPM
RPMPVIDLPFSRIAMDVVGPLPRSSNGYQYILVFVDYATRYPDAVPLRSVTAPRIAEELVKWISRMGVPQEILTDQGRNF
MSGVLRGVCQTLRIKQLRTSVYHPQTNGLVERLNGTLKRLLRRCMQGDPRHWDLLLPLVLFVLRDAPSESLGYSPFELVL
GHQPRGLLQILREDWEQSPGAVSSPSKYQQDFRRRVQHAREIAAGNLKQAQQTQKDRYDLRAKERGFQPGQKVLVLLPSS
SSKMLTQWQGPFEIVRQVGPVDYEVYRPGHVKTKQIYHINLLREWRQPEGWAAFTEETVXNPEXRTDARDLGGMEPWRAI
KVSDELTLRQKQXVTXLLKEFQRVFSEDPGWVKNTFHAIQTPPGVVVRDRWRPIPHHLSEEVRREVEKMQALGVITTSRS
PWRSSLVPIRKPDGTLRLCVDYRKVNEVATFDAFPMPRVVELVERIGAARYISTLDLAKGYWQIPVRPEDRHKTAFGTPW
GLYEFVKMPFGLHGAAATFQRLMDRLLAPHTEYAAAYIDDIVVFTSSWGQHLQALRVVLSELQKAGLTATPRKCAVAHKY
TKYLGFLVGQGTIRPLEDKVRAIRSFQAPRTTKQLRSFLGLVNYYRRFVPRFSELAAPLSEALKGXRQKGVQWNRAMLSS
FQALKGALCDNVLIHTPDFEKPFSLQTDASSVALGAVLTQQDAGVDRPVAYASRKLLPAETRYATIERECLAIRWAVEHF
RYYLLGREFTLITDHAPLKWLSTAKTDNARIMRWALALQPFKFHIAYCPGKDNVTADFLSRCDDASDLDVGXRSGQXPQR
GAGTGDARPREPPQGSWRGG
>Gypsy-7_AA#LTR/Gypsy 90-4352  [Aedes aegypti]
MANVNAELLGQLSAMIAEALQASIGNAIQQVNAGAQNQANDAAAPTPKIPTFSMSEYRPSDGSSVADYFSRFKWALELSQ
IPQVQYANYARVHMGVELNNALKFLVSPQDPATIDFEVLQTTLVNHFDRKKNKYVESIKFRQIVQQTGESVAQFVLRLRQ
GAADCEYEDFLDRMLIEQLLHGLEAREMCDEIIAKKPATFKEAYEIAYTLEATRNTAREVNTGATSSAPEETNRLGYESL
RTRRKSTFNHPKNVHGEQRTNIQPDNEVGPCKGCGGQHLRSQCRFRDVRCHNCNIKGHIAKVCRSRKLSARDSSADQVES
QESPSPEIDVVQSLSQVHDITSTGKKMIDVKIDGRSLRMELDTGAPCGIIAESKLRLIKPNFALQKTNRRFSSYTGHPIE
CLGRIPVNVTIGATNRRLNLYVVAGESDSLFGREWISQFVEQINLNRLFATEVPVNTITSSEITPDQATRLSALLGGFEE
MFSEVPGKLVGPPAKVHLKPDACPVFVKARDVPHALRERYAAEIDKKLASGFFEKVEYSEWSSPTHIVVKKNGDLRITGN
YKPTVNPRMIVDEHPIPKIESIFNKMNGATMFCHLDVTDAYTHLPIDEEFSHVLTLNTATHGLIRPTRAVYGAANIPAIW
QRRMESVLQGMDDVVVSFYDDIIVFAKDFDSLLQALSVTLDRLRLNGLRLNRTKCVFATSSLDCLGHKIDRHGLHKSDKH
VEAIRDAPRPTTPEELQLFLGKATYYSAFIPNLSERARSLRDMLLSDSFQWTPEADKAYRDLKAVLTSPQVLMQYDPALP
LVLATDASKTGLGAVLSHRLSNGLERPIAFASTTMSSTEQRYPQIDKEALAIVWAVKKFFHYLYARKFTLVTDHKPLSQI
LHPDKSLPTLCISRMANYADYLAHFDFNIVYKPTKQHTNADYCSRIPSKTTSSGINMLGMQEGGSIEDEFDGFVLHQIQQ
LPVRAEHIARETRKDDHLGKIVQTLETGRDLSQCGYKSPENKYTLAANCLHFEHRVVIPPSLRQSILTDLHVAHLGVVKM
KSLARSFVYWPGIDSDIEVAVRSCCDCARESPAPPKFNRHHWEYPKGPWERIHVDYAGPVADMMLLIIVDAYSKWVEVKV
TSSSTTPATIAILDELFSTYGAPTTLVSDNGPQFTAAEFKHFLQMSGVKYHKLSAPYHPATNGQAERYVQTVKQALKSMG
TTRSTLKTNINEFLRQYRKATHSETAESPAKLFLGRNIRTRLDLVRPLDAGTRITEKQQSNFNPTFRSFIQGQKVYFLSG
NARLSKWIPGTIAEQLGDLHYRIDYHGKLVRRHVDQIQRFHDSDQNNVPPTSPTAPTQQQESKSSEYKGVVQRRVRYYGE
XMTSSNRSPSTASDGSAVMLGSPDARFSTPCGTPELQTRHIDPPMLRRSERQRRPPLKFSP
>Gypsy-7_ST#LTR/Gypsy 13-4289 [Solanum tuberosum]
MALDSMDTSKKSDGAVPSDSSTELSLLSTRVDNLTQLVQDFISTVAVQSAVVDPVHPRQAAVCLSPGSNSSGPLTIRHKP
AAVALSRFKGQNVEAWLFQAERYFEFYSILPIHQLSLASFYLDGEALDWYRWMFRNKQLFDWPHFAEKLRLRFRDISLRS
PEGRLSKLVQTSTVAEFRARFEAISNETIHLPDEFLVRCFISGLRSDIQDEVAIREPTSLEEAIRLANMYEQKLNYAKSP
VRPAFARTQPLLPNPTTPSPLILSKPTAPSSAFPKIPFKRLTASEIQARRDKGLCYNCDEKYTIGHKCKALPQFLLLEES
SESSIELPDSFCPEDFLAEELQCLEVQAHSTISYHALSGGTSHATPRFHGHVRGSPVQVFVDGGSTDNFVQARVAKFLNL
SIEPAPPFSVVVGSGQRLRCDGVVRQVPLSIQGCNLVVDLYVLSLHGADIVLGVSWLSSLGPILQDYSQRLFEFSLKGQK
YSWIGEPSDKAQPVQLHTLRRLSETEAVSSYFCLRLVTRESLGPPPYPPDMDSLFASYEDVFCKPQGLPPARELDHAIHL
NPGSGPVNVKPYRYPYFQKNIMEQLVANMLTDGIIRPSTSPFSSPVLLVRKKDGTWRFCVDYRALNIITVRDRFPIPTID
ELFDELHGAIFFSKLDLLSGYHQIRVRPEDVAKTAFRTHEGHYEFLVMPFGLSNAPSTFQATMNSIFRPLLRRCVLVFFD
DILVYSQTWGHHLQHLTQVLQILREHKFVAKCSKCLFGQPQIDYLGHVISSKGLAVDPSKISVIQQWPIPTNIKRVRSFL
GLAGYYRRFIKNYATIASPLTDLLKKVSFKWGDAAQLAFETLKNKLSCTPVLVLPDFTQEFHVETDASGVGVGAVLSQRG
HPIAFYSQKLCPRMQKAFTYHREMYAITQAVGKWRQYLLGRRFTIVTDQQSLKNLTDQVIQTPEQQQWLGKLVGFDFHIV
YRPGKLNRVVDVLSRPVEGTLNALSIRTFDWIDEIRMATQFHPELLAIKHGIEQQTATDSDYVLREGLLFFKGRLVIPSD
SPVCIRLLQEFHSSPIGGHAGIARTFHRLSSNFYWHHMRRDVRVFVTACQVCQQMKDMNRSPAGLLQPLPIPNVVFEEIA
MDFITCLPSSKGKATIMTIVDRLSKYGHFIPLPSTFTAHSVALAFVANVIKLHGPPRVIVTDRDPRFLHSFWQEINRLQG
TSLAMSTAYHPQTDGQSEALNKCIEQYLRCFVSESPHEWVPMLSWAEFWYNTAFHSSAGVTPFQVLYGREPPTISRYVLG
SAADDLVEKYMLKRDDVLVLLKNNLSKAQIRMKLYADARRTDLQLEVGDWAFVKLKPYRQLSLRLQHHHKLGRKYFGPYR
VLKRIGYVAYKLDLPADARIHPVFHISMLKKCVGTPAEQVTPLLQVPVEDQHPPNLEDKVLDWEGS
>Gypsy-8_DEl#LTR/Gypsy 1053-5206  [Drosophila elegans]
MNRQEILALLVAELRAKLSELGLSTTGRKCELQNKLLAHYGLQSDENDEDAIEVDDDEDGSFASVNSDNYQAGAGAGNGA
PRENRIVSEQNSQIGNANTGRSWFTLKDVEGSVSQFSGTGSPDINQWIEELEECALTVEWSQLQVFIYAKQLLSGAAKLY
VRSQRNIGDWSLLKAALLEEFGVKVTSAEVHRRLGKRQQKKTETLQEYLYALMELAKPIDLDDESLIEYFVDGIPDSKGN
KALLYQAKKLKELKVQIEAYQKMRGSVKHVKYDSHFYKGEKETVKAVEKVRKCFNCGDESHIKKDCPKRDNKCFRCNQPG
HRAAQCKVELVAKQEKATNLVQVEGRVKPTSTFTSSGLELKHVSFGKVTFKGLVDTGADLCLLRRNVFIRLGVENLTGGE
KCLTGIGESQIVTFGSLTIPVQIDGINLNVEFHIISDEDMAFDAILGRTLLDSVDMKVTKDGTELVRRSDSRVGKGQKFE
VREKEKNGSSCSELLNEFQSLCMMTMEQAGSKLEVDVSHLPHSQRGVVKRMIDEYKPIRNVHCPVEMKILLSDDLPVFQH
PRRIAFSEQKVVDEQVQEWLEQRIIKPSTSEYASPIVLVAKKNGQKRLCCDYRKLNEKIVRDNFPMIQMDNVIEKLQGAT
IFTTLDLTNGYFHVPVEVDSQKYTSFVTQNGQYEFLYVPFGISNSPAVFTRFIMAVLRELIKNGDAVVYMDDIIIPSSDV
VEGIQKLQRVLEVAEQNGLKINWTKCQILQSRVDFLGYIIENGSITPSDEKTQAVANFPVPSNQKAIQRFLGLTSYFRKF
VDGYAVIAKPLSDLLRKDVKFEFKELQQVAFEQLKAALTSKPVLKLYNPRLATEIHTDASKFGFGAVLLQKDPEDGQLHP
VMYMSRKTKPCEEKYHSYELEVLAVIGALTKWRIYVLGTKFKIITDCNAFAMTMKKKEVPLRVARWAMYLQDYDYEIEHR
SGTKMRHVDALSRVACFVLTDSVMHKLKEAQVADEWTNVIRNLVETKGHEDYYIANQILFKNPDRELIVVPSQMETEIIQ
IAHKQGHFSAKKTQELVEKSYFIPKLRDKVAKVVGSCVECILVNAKSGKQEGYLNPIDKGDKPLVTYHIDHVGPMEITKK
RYNHILVVVDAFSKYVWLYPTRSTGVEEVLNCLDRQAIIFGNPFRIVSDRGAAFTSHLFKEYCDKEKIQHLLIATGVPRG
NGQVERMHKIVVPMLSKMSLENPGNWYKHVGRVQQLINNIEPRSTKVAPFKLLTGVDMRVVDIAELKEQVQQSLIEELDE
EREQIRKQARDNIQALQEENRKAFDSKRKEEKQYKVNDLVAIKRTQYGVGLKLKGKYLGPYKVVKVHKHGRYDVEKVGDS
EGPLKTSTVSEFMKEFGTNTTSGGP
>Gypsy-8_BG_pol#LTR/Gypsy 1269-5060 [Blumeria graminis]
GKLKAPEHSRAQEPETVSSFEASMNTKPFLLNALLNDTKMVQALVDNGCLCFGIIDEALAEKLRLPRIPITPRLLETADN
SSTNKPTVDKITYISLDLDGYITPKLWLYIVPQSTHQLILGKKWLEEQDAVIHSKEQRLELRKYGGSVCSVERWRQDLRN
VARPKNVPIKTMALMVQTVPVCKASLEDISKALRGKPGVSLEIARNRLPDQVKDFAHLFADDTGAKDLPSSRGALDHSIE
LKKENGKPLSPPWGPLYSMSREELLVLRKTLTDLLEKGWIRPSKSAAAAPVLFAKKPNGGLRFCVDYRGLNAITVPDRYP
LPLFKETLRQLSKARWFTKLDVKSAFHRIRIKEGSEWMTAFRCRFGLFEWMVTPFGLSNAPATFQRYINEHMREHLDIDA
TAYMDDVLAYTSGSEEEKTVVVRSILSKLKSAGLYLDIDKCEFLCQEVKYLGFIIKAGENVSTDPDKVKAILEWKAPTSV
KGVRSFLGFANFYRCFINKFSDIAAPLIDLTKKNSSWNWGEKQNSAFVQLKRIFATSPVLAQWDPDRDTVLEADCSGYAL
GGCLLQLDDLNKLRPVAYFSRRLSGAEYNYPIHDKEMLAIIECLKEWQAELKSVAKPFTILSDHKNLNYFASKKLLNKRQ
ARYNDTLQQFNFNIQWRAGAASERPDALSRREQDKPTGLDDERNAGRVIQLLPTVSIHPVNTRKTNRNTNQTMDPAAEAI
LFESDELQALWAKGIEIDNDWKRARNAVQAGERCFPPDIALKYRANIAECTVAADRVLRGRENRIWVPDHEPLRTAILQQ
THDSHLAGHPGRDTMVGILLRRWFWPKMRESVRRFVRNCDVCGRSTVWREAKAGFLRSLPIPEMVGCELTIDFVTDLPPS
NGCTNIMVITDRLSKEVFMFGTNSMTSEECAKVFVDRYYRYHGFPRYLTSDRGSDWVSHFWKTFCELTKISQRLTTAYHP
QSNASERANQEIYKYLRSFSCYSQNDWMDLLPMAQLALNARPNSSLGGMSPFFLKHGYDLDPVTQPTPTTCEKSRHPGRL
SAMKFVQRLKDAQDFAQAAMASAQQRYEANGNLIRRQPEKFRVGDKVWLDLRHIKTPQLSKKLAWQHAKYEVTAVPDALT
VELNVPGNIHKRFHVELVKRAGSDPFPSQFRDDAQNPPIIDDLEQPEYEVESILRARTVRRSRGKYRQALVKWVSEANPT
WEPVEFIEEAKALDDFEAKYGPIATNDGPPEDSVGAFVGPAEPGTLRRRRNRSNRFRSHGDKTK
>Gypsy55_AG#LTR/Gypsy 98-4534 [Anopheles genus]
MSQEEDERRSSQGWQNVMAPVTVHAPQDTGQRPQVPLTQFVQQNGSVPPFSASSVQNVPESDNSATAQILKLMQQQMAQQ
QQILLQLMQQTKAPIEQTPLEQILDSLCGHIKEFRYDEENGSTFAAWYTRYEDLFLKDAARLKDEAKVRLLMRKLGTSEH
DRYTSYILPKHPRDYSLQETVAKLTSLFGTKESLLHRRYKCLKLTKLRTEDFITFACRVNRGIVDFELGRLTEEQLKCLV
FVCGMKGEEDIEFRTRLLHRIEENQDVTLDQLSAECQRMTNLRQDSAMIERDRSEQVFSVQRNANRNQRTNTGPSHYTNE
QRTGKPSRPCWLCGSLHWTRECTYKTHTCTQCGSVGHREGFCKQQRTKKQPHRKKTFRKRANMQSVTVNVNSLHHRRKFL
SCSVNGSQIRLQLDTASDITVISRRLWKRIGSPQLFPSSVIAKSASGDKLEMDGEFRATVGINGQEKQAVIFVAKGELAL
LGIDLAEAFSLWSVPIDQLCNNVTSTATTPEGIVRKFPGLFKSTMGFCAKAEVTLHLKPNCSPVFCAKRPVAYAMRDAVD
AELDRLERLNIITPVQHSEWAAPIVVVRKSNGQLRICGDYSTGLNASLHPHDYPLPLPQDIYTKLGNSTIFSQIDLSDAF
LQVPIAEQSRRLLTINTHKGLYLYNRLPPGIKVAPGAFQQLMDQMLAGMERVASYMDDVIVGGRTQREHDDVLNETLRRI
QEYGFTIRPEKCSFNKRQVRYLGHILDNHGIRPDPAKIAAIKDLSAPTDVSGVRSFLGAVNYYGRFIPNMRKLRYPLDNL
LKEGSSFKWSPECQKAFEQFKSILSSELLLTHYDPRREIVVSADASSVGLGATIGHKFPDGTFKVVQHASRALTKAEKNY
SQIDREGLAIIFAVTKFHNFIFGRHFTLQTDHKPLLRIFGSKKGIPVYTANRLQRFALTLQLYDFDINYVSTDNFGNADI
LSRLIRNHEKLEEDYVIASIGLEEDIRSVVVNSLSSVALNATDVATATKSDPIMSKVIQFVRQDWPRNSTFSGELACFYA
RKEALSEMGGCLLFGERVIIPKALRQRCLRQLHHGHPGVQRMKSIARSYVYWPKIDTDIAELVASCNACASAAKSPPHAS
PVSWPEITAPWQRIHIDYAGPIDGFSYLIVVDAFSKWPEVIRTASTTSKATIRILNTMFARYGMPVTLVSDNGRQFISSE
FEDFCICNGIEHLTSAPFHPQSNGQAERFVDTFKRAITKITSDGTAIEDALDTFLQTYRATPNPQVPNNEAPATVMFGRQ
IRTCLELIRPVPKPQETNNDEQRRNFVPNDLVFAKIYSQNGWKWKPGRILRKCGNVMYRVMTEDHKIIRSHINQLRRRVP
SNQQSSKRDQHLLPLHILLDEWNLTPPSSSPDSSSSSSSSSPSSSSLSPPSDSAPCNLSPSSAESSSYRTVSQSSASPPP
ERDCIPEESHRGAQPVPPPRRSFRDRKAPRWFDPYLLY
>Gypsy48_AG_pol#LTR/Gypsy 2145-5351 [Anopheles genus]
RKTARKISEPKTCKNTITGSEAPHVLFSFSVWRTSTTVPKTLQFFAAKKLICSTAAAGNPRAILGSSRLFIDDEKTTFTF
LVDTGADVSVIPYNLFGKVIKQAEHQLVAANGSPIATYGTKLLQLSLGLRRVFSHCFTLAEVNRPIIGADFLAKHDLWVD
LKRKRLIDHLTGQETIATIALVDTPTPKNWMIESSIFGEIFKKYPTLVDPPDYKKPVRHSIVHNIETKGSLPFSKPRRLD
PKKHKIAQAEFQHMLDLGICRVSSSSASSPLHMVPKPDSDWRPCGDYRRLNAITIPDRYPIPHVQDFTMNLDGCKFFSKL
DIIRAYHIIPVAEEDIHKTAITTPFGLFEFLRMPFGLRNASQCFQRLMNNIFHDLDFVFVYIDDILIASSTRESHLEHLH
IVLKRLTDHDIKLKPSKCILGVNQIEFLSHTISAKGITPSPEKIMAIRDFPSPCSVKQLQRVLGMVNYYHRFIPNVSDKL
RVLHQLVKEHNKNRKIKFEWSDACEQALNQIKDELSNATMLVHPKSNATYTLTTDASSVAVGAVLQQTSEGILEPLAFFS
KTMTPTEQRYSTFDRELLAITLGIKHFRHFLEGRSFTVYTDHKPLIHALNSKTEKSPRQCRQLDFISQFTTDIKYITGES
NVVADALSRIGETNEITNFTYEAIAKEQQKDEQLKQLFEDSNSQANSKFKLNQLILDKNKLVFESSTGQNRLYVPQSLRK
KTFANLHNLSHPGIRASRKLLSERFFWPSMNKDVGNWTRSCVGCQKSKIGRHTRSPLEALSVPKGRFEHVHMDIVGPLPP
SEGMSYLLTIVDRFTRWPECYPMPDMSAKTLAETFVRNYIPRFGCPSTITTDRGRQFQSKLFEELTKLLGTHHIKTTAYH
PQSNGMVERFHRHLKGALKACEDNTHWISRLPLILLGIRVAYRDALKGAPAEMVYGESLRLPSEVFLPSAAKSVEDVPEF
VQDFKKALRHIDPCPPKLNDTTPVYLPKHLQTCKHVFVRVDKVRTGLQAPYEGPFEVVRRCRKFFTVKIKEKNESISIDR
LKPAFEMEGVSKTGKTTNSQKNVRFAKN
>Gypsy65_AG#LTR/Gypsy 689-4684 [Anopheles genus]
MEPNKLFGNLPPLSLAGVPLTERRTKWTTWKRGFEIWLRTAKIVDGTEKKNLLLTCGSLELQEIFFSIPDADVEADVDQG
VDPYEIAILKLDEYFAPQRHEAHERFLFWSMKPEPEETLEKFVMRAQAHGSKCNFGATAAESAGIAIIDKVLQFVPANLR
VKLLQEKNLSLDEVIKQINSYETSRVANEQMSGRSKSFEIDNQHIHHIKTLCRFCGRTHGQQSCPARDKTCAKCGKRGHF
AVVCYSNAGQTSNRLHTNQRMQKRPFGGHFNDSELNKKTAKFARKIHAIQDDGNEPLECELVEMVSSANDSDELIWAKVG
GILIEMQIDSGVQSNIIDDRTWASMRNNQVKIIGEARSPDRKFKAYAQTDCLEIITMFEAEIAIADGLKELRTISKFYVV
KNGPQPLLGKITAKQLGVLYVGLPSQHESINQVETFRAFPSIRGVSIHIPIDKTVTPVAQRLRRLPLPMLDKVDSKLNEL
VAKDIIEKVSEPSSWVSPMVIVVKDCGSIRLCIDMRQVNKAILRETHPLPTIEDIRWRMNGAKYFSRLDIKDAFHQLLLD
EESKTLTTFITHRGLYRYKRMMFGISCAPEKFQKILEQVLADCPNTVNFIDDIIVTGKTETEHDLALEKVMEKIEEYGIL
LNQSKCVFKLTEIEFVGQRFNQNGMLPALNKIEAIRSFRPPKNCEEVRSFLGLITYVGTFIPNLATVSFPLRELTKNNAE
FVWERDQNKAFNELIRLVSNVERLAHFDPHLKTRVVADASPVGLGAVLLQFQNEQPKVIAYASKSLTSTEQRYAQTEKEA
LALVWAVERFQIYLFGIRFELETDHKPLEAIFSPTSSPCLRIERWVLRLQAFSYDVIYRKGKTNIADPLSRLSSPTEVSE
FDPDSTVYIRSVMENAAIDVQEVEIASSNDAEMRALKECLERGAWNYTDELLKPYQAFRLELGTVGDLVVRGSKLVIPKA
IRQRMLELAHEGHPGRTKMQQRLRCTCWWPGMDEAIARLVSSCSGCQLVSQPDKPEPMKRRPLPHKPWVDVAIDFLGPLP
TGDYLLVIIDYFSRYKEVEIVKKITAIETSERLERIFVRLGYPRTITLDNGRQFVSNYFDNYCKQRGILLNKTTPYWPQE
NGLVERQNRSLLKRLKISQAQNGDWKKDLGAYLSMYYATPHSTTGKTPSELMFNRNIRTKIPSLGDISTGSALPMSDYRD
RDTCMKEKGRVTEDQRRKAKPSDIIVGDRVLLRNTMPGNKLSTPFGPQIAKVIEKQGSRVTVQDEQNGKLYDRNSSHLKE
YKDPDDHRDGCERVVDNQEEGVGFNEPTTEEIPRTLSRPKREIKRPARFLS
>Gypsy88_DR_gag#LTR/Gypsy 20-1012 [Danio rerio]
MEPECPSSQELLATVAQHGSTVQRHENVLVQQEALMAKHSQVLSELMTTVRQLFDRLPTCTTPASITTPAPMSESRAPSP
MMEPRLPPPRHFSGDPSACDGFLTQCSLTFELQPSSFPSDRAQIAYVITLLSGKALSWATAVWKAKSPFCSSYMAFEQEF
KRVFDHPLSDRQASKKLLTLRQGTGSVAEYAIQFRTVAAGSGWNDEAFMVCFQNGLSEIIQDDLATREPALDLESLIDQA
IKLDNRLRERHLYRATVSTEGFTPTSSSPVLLHQDNPEPMQLGRTRLSPTERDRRMRERCCLYCGLSDHFRSTCPQLSGN
AQSRTGREGL
>Gypsy66_DR_pol#LTR/Gypsy 1459-6135 [Danio rerio]
MWPSRASSCGLSHEKSFAKREEVTGRGPPVTEKDLVSQPFSNASRGEKPVTQNTFKRAIVEKRVAQLIGGRCMITCNLNG
VKTQMLLDSGAQVSIVGQAWLKKTLPTIEIQPLESLLADNQLSVTAANGTAVPFNGWVEVLLEISNDKQNNITIQVPLLV
SQKCMDCPLLGFNVIGEIIRENNDCVSSVNLIDLLSETLQMQKDTAEILVSTVNSNQIKEYTASTKVKTGKLRVIIPAGK
ILEVRCRVKAGHKSGIMMFEPASESCLPEGLELFPAVVNVSPYASKTVRIPIQNCTNHDIHLPQRLVLGGIESISEMRPV
CPSSSVEQSDKQISSALLCSSQVPSVDDVSSKEEHQNQTMDEKWHPPVDLGHLNKQQQEVVRKMLFEESDVFAREEGDIG
CIPDLQLKIRLTDNTPVQRCYNAIPKPLYKEVKDYVQNLLNRGWIRKSSSSYSSPVVCVRKKDNSLRLCVDFRDLNRKTV
PDRHPLPRIQDLLDSLGGNSWFSILDQGSAYHQGFVSEDSRHATAFNTPWGLYEWVRIPFGLTNAPAAFQRCMEGVLEGF
RDECCAPYLDDVLCFSKSFNDHIDHLRNVFCQMRAHGIKLRPQKCELFKRQVRYIGRLVSGEGVQIDPADLEAVRALKNK
VPRTVGEVRALLGFLSYYRSYIQDFSRLAKPLFELLQRPPETSESRQNPKVHSRSGAIRLKEKGQLHSRTPVVWTVEHGS
IVSKFVDVLTSPPVLAYPNFDLPFVLHTDASNEGLGAVLYQHQGNKLRVIGYGSRTLTPAEKNYHLHSGKLEFLALKWAI
CDKFRDYLYYAPTFTVYTDNNPLTYVLSTARLNAVGQRWVGELADFHFDIKYRPGRTNVDADTLSRHPLKLTDIMEEHIN
TLSPETVSAVWQGSKASTERDVPWIAALELNTPSKEMLFNEENFATVTPEKVKAAQRNDPAIGEVVKLKEQGWTPNWKDK
NSMKKETRKLLFEWMKLEMKDGILYRKAGQHWQLVLPLLFRALVLKKLHNEMGHVGVEKVLHLARERFYWPSMRKEIEEY
ITTKCACIKQKHPHVHQRAPMGSITSSSPFELVSVDYLHLEQSRGGYEYILLLVDHFTRFAQAYPTKNKSGKTAAEKIFQ
DFIPRFGYPEKLHHDQGKEFENHLFQKLQQLSGVAHSRTTPYHPQCNPVERLNRTILQMLRTLEEEKKSNWKDYLPHVVH
AYNCTRHESTGYSPFFLLYGRSPRLPVDLLFNLKNKTESSNQHTFAEQWEDRMRQAYQIAKENSQRSSAKGKKYYDRAVR
GAILQPGDRVLVRNLSERGGPGKLRAYWEKDVHRVVERIGDGPVYKIQPEIGSKTLRVLHRNLLLAVNDLPLDESMARTK
ETKKVKQNKQMRNQPEDESESDTSDEETHTYHYDLRKNIPCYQFVSIPEKKREPVNPMAQSHSRLRPSATEFCPDKNPKS
LENQIQEFDQEHGETQRMVENPLPVTQDEDDEELRNEAETIRNVESEMAEEENVRRTQRVGKPRKLLTYEALGEPSYQPW
RAEANTLWLTQQYMPQENAFYYQSMPTHPCCHWGYNRF
>Gypsy41_DR#LTR/Gypsy 199-5025 [Danio rerio]
MSTFDLETFVANPTLEVFERCRKDDLLQIGEHYRIPVVRQSLKRLIKDEVLKHLIKHKILNLPDADGDKAGAEAVEHSPD
NLVDAEKETGEYAEVETEAKTGLPPFHPFSPTSIESGGDARLKVRLARMQIEAQERAETRHAEMKLRLDIRKLEIDAETQ
VKLRQLELDSMKVGSGRSVQLNPVSPAANDNSASFLSDVSSSAFDISKHIALVPHFRESEVDSYFAVFERVAAALHWPKE
VWCLLLQCRLVGKAQEVCSALTLEESLKYDSVKSAVLRAYELVPEAYRQRFRNQKKNAQQTFVEFARDKGVLFDKWLAAN
NVRDFNALRELMLLEDFKNCLPERIVTYLNEQKVTTLSQAATLADEYVLTHKSVFSVPRPDKTLSSFTAQNSARPKSSSP
TNKEIRECFYCHKIGHLISECLVLKRKNQQGQMKPAAFVKTLSELDSSENEIDAGFKPFLMKGLISVNGNTEEQKEIKIL
RDTGALHSFLISDALPLSDQTYCGSNILVQGIEMGVLTVPLHRIHLQCDLISGFVKVGVRPSFPVKGVAFILGNDLAGDK
VSSLPEVVDKPDCFIPADDISNTFPDVFSANVVTRAQKRRIGEEIILSDSFLPPLFTENPVSVDFKSFKGAEKETRSDNT
PPTDASECDLLTEPISHERIKNAQRDDESLTKCFSAADKDFKQTKNNLSVYVIENGLLLRKWRPSRDVENEWEVVCQIVL
PTIYREQVLNLAHDHPLSGHLGVTKTYKRILKHFFWPGLKKDVVSHCRTCHVCQVTGKPNQKIPPAPLVPIPIVGEPFEH
VILDCVGPLPKTKAGNQFLLTIMCSATRFPEAIPLRKITAPVVIKAMIKFFSTFGLPKIVQTDQGTNFLSKVFAQVLTSL
GIKHRTSSAYHPESQGAIERFHQTLKSMLRKYCMSSEKDWDEGIPLMLFAIRESTQESLGFSPADLTFGHVFRGPLKVLK
DGMLNEKSKGVNILDFVSRFRERLHNVCTLARESLSVAQEDMKGWYDRKAVVRDIKPGDDVLVLLPVPGSALSARFSGPY
KVSKKLSETDFVINTPDRKRKFRTCHINMLKLYYPRKVSGNLEKEQLAAVSSDPLVAAVTAVCDSADVSELPSLGECHND
DDDFTFRNDLTMCGRLLNSEILDNLPDYFNTLSETQRRDLIKLLREYPMLFSDVPTQTNVLQHDIQVTCDHPIKQHAYRI
NNVKRSVMKDEVDYLLKNNLAEYSHSPWSSPCLLVPKADGTFRFCTDYRKVNSVTVPDSYPLPRMEDCIDNLGSAKFVTK
LDLLKGFWQIPLSPRAAQISAFVTPDNFLQYKVMAFGLRNAPATFQRLVNIVLSGVPNCHAYLDDLVIYSCDWDEHLSAL
RTVFKRLSDASLTINLAKCEFGKATITYLGKEVGQGQVRPVSAKVTAIAEFPIPTTRRELRRFLGMAGYYRSFCRNFSTV
VCPLTSLLSPKADFVWSDACQQAFESIKLLLTCAPVLAAPDFSRPFKIEVDASSLGAGAVLVQEDDVGFDHPICYFSRKF
NRHQRNYSTIEKEALALILALQFFEVYVGSSVLPVTVYTDHNPLVFLSRMYNHNQRLMRWSLIVQNFNLNIKHKKGSENV
IADTLSRA
>Gypsy27_AG#LTR/Gypsy 22-4107 [Anopheles genus]
MSKPPAKESSEQWIIEMFNQQKLLNSVLSVMKTKNDDGSEKAIDAIAGQIKEFHHTEDTNFEAWYSRYEGLFLDDAKRLD
DGAKLRLLLRKIGVTEHERYISSIMPKQPKDFDFKNTVEKLKKLFGDRESIVCKRFKCLQLVKEPHEEYGAYACRVNKKV
VEAKLAGIAEEEIKCLLFVCGLKRDADADVRVRLLSKMEDNSEITLDQLTGEAQRLLNLRQDSNLISNTAHEVNAVRKNE
TKQQNIKGGGKEAKAVSCWLCGGQHFARECSFTSHKCEDCNEIGHKEGFCETAYRNRSRYRNNKAKVRVVTVNKIQAGRK
YVTAALNGRELKLQLDTGADITIISQGKWRQIGGPKLSPASVSARTASGTPLKLLGEFCCKMTINKQQKEALVRVVEEEL
LLFGADSMDVFGLWKQPLDAFCNIVGCVKDAAAAVIQQFPSLFSNELGRCDKMKISLQLKDDVKPVFRPKRPVAYAMQSM
VEDELTRLERNGIITPTDSSEWAAPIVVVRKANGTVRICGDYSTGLNDALQPHQYPLPIPQDIFTAIGKSAVFSQIDLAE
AFLQVEVCERSRELLTINTHKGLYRFNRLPPGVKTAPGAFQQIVDSMLSGLEGVAGYMDDIIVGGADEESHLKNLRAVLI
RIEEFGFKLRAEKCSFLKPQIRYLGHLLDRQGIRPDPAKIEAILKMPAPTQLSEVRSYLGAINYYGKFVFQMRDLRYPLD
LLLKKGGEFQWTAECEKSFRRFKEILSSDLLLTHYDPSKEIIVSADASSVGLGATISHRFPDGSIKVVQHAARALTKVEM
NYSQPDREGLAIVFAVTKFHRMLFGRRFILQTDHQPLLRIFGSRKGIPLYTANRLQRWALALLLYDFAIEYVATDNFGNA
DILSRLMDRHEKPEEDYVIASIQLEDDINHLVTSATQALPLNFKDLERGTQADPLLRKVFQFVQNGWPKGEEKTEDLKQF
FARREALSTVGKCLLFGERVVVPANLRNRVLKLLHKGHPGVCRMKALARGYVYWPKLDSEIENAVKTCQSCASAAKSPEH
CTPVDWPKTTGPWQRIHVDYAGPMEGEYYFLVVDSYSKWPEIIPTRQTTAQATVQMLRGLCARFGIPETVVSDNGTQFTS
SEFRDFCMENGIHHVRTAPYHPQSNGQAERFVDTFKRAVKKIREGRGEMHEALDEFLFTYRNTPNRILDQKSPGEMMLNR
KVRTSLEMLRPSFRDIRPADPVVADEATRRSFSINDRVYAKRYHRNGWEWVSGVVDKRVGNVMYMVKIDGKTLRYHVNQL
RMRNAETNEGRTQQPMPLNVLLDAWDMSGTTVSASSSETSAATTTNLAEREMTPADGTEASLRRSTRVRKQPAWLEGYHR
S
>Gypsy25_AG#LTR/Gypsy 210-4622 [Anopheles genus]
MLNPDEMMEEEEHRRLSQNWGGNAVFGNGQQQPSQSNVALPAQPPLQNVVGAPSQQGASTSGQDAGMLSQMLQLLQQQMN
QQQQLMAQMLKYQQQSVPQPSQPSLIPTNPELIIDALASNISEFRYEAESGATFKAWYERYEDLFLRDASRLDDGAKVRL
LGRKLGTAEHARFTSFILPRAPRELTFDETVAKLTALFGRTESLLSKRYKCMQITKAPREDLLTFSCRVNRACVDFEFAG
MNEEQFKCLILVCGLKEEVDSDMRNRLLARIEEKHDVTLEQLSAECQRITNIKVDSALIANESGERVLAVNSGGYRQKQF
QFNRQQYQSYGQPTQAHARANDNTMSVQKPLNACWLCSGPHWKRECPYRSHECADCGRLGHREGHCEVVNRFQRRGYNKK
GTNVATRVVNINVCNVEARRKYVHILINGRPTKLQLDTASDITVISEGLWKDIGQPSLIRATVKAKAASQEYLELMGEFE
ALLTIASRTQKAVVRVAYANLLLLGADVVESFSLGSIPMDHYCSSIDAESATQMTWEERFPTVFRGMGLCTKSSIKLKVK
EGSRPIFRPKRPVAYAMLKTVDEELDRLETLNVITPVDYSEWAAPIVVVRKANGKIRICGDYSTGLNDLLQSHEYPLPLP
EDIFAKLSKCRIFSKIDLSDAFLQVQIDKEYRPLLTINTHRGLYHYNRLSPGIKIAPAAFQQLIDTMLAGLSGVCGYMDD
LIIGGLTDEDHDKTLGQVLKRIEEFGFTLRADKCVFRMCQIKYLGHVIDGRGIRPDPEKISAIQNLPPPTDIAGVRSFLG
AINYYGKFIPMMRDLRFPLDSLLKDEKQFKWTKECEAAFMKFKEVLSSELLLTHYDPSAEIIVAADASSVGIGATLSHKF
SDGSIKVVQHASRALTKAESNYSQIDREGLALVYAVTKFHKMLYGRHFRLQTDHRPLLRIFGSKKGIPIYTASRLQRFAL
TMQLYDFTIEYIQSGMFGNADILSRLIRNHAKPEAEYVIASLNLEEDLRSVAINAISNSSPLCFRDVEKSTQADPLLRKV
YLYIQEGWPRDATFGSELARFHVRREALSTVEGCILFGERLVIPEDLRAHCLEQLHRGHPGVERMKSLARSYVYWPRLDD
EIVQYVAACEACAAAAKTPPQAKPTPWPKPSGPWQRLHVDYAGPILGDYFLVVVDAFSKWPEIVKTSTTTSRATVAILRG
LFARFGMPLSIVSDNGPQFTSQEFKNFCECHGIRQVTTAPFHPQSNGQAERFVDTLKRALKKIQTGGTSMDEALDTFLQA
YRTTPNPALEWNTTPAEIIIKYPVRTHLELLRRPPVVEEETEITAAGLQPGDVVATKKYYQNTWKWISAEVLRRLGTVMY
ELTSRNGRMMRRHIDQIRKRSVKEPHQLVQDSETPTQLPIDILLGEWSLTVPNEPLPLSSTTEELRTVPSPQPFSPAQVA
PSESNHRKIRSPRRSSRNRKLPRRFDAFIL
>Gypsy33_AG#LTR/Gypsy 82-4482 [Anopheles genus]
MLTKDQMLCALECANVPVSPNATIAQIRKMYETTFESVQNMNNPYDVPSVSGKPKEETALALQSETHVSENNATTMTHAE
NDVTAILRNEHNTATHDSTIAGNPQSDTPNLNDEIEMLKKKLEILELKQRITALEAPTVPFPGPQPPIFNFEEIVDKFSG
DNNDHIERWFKELERAFLPYNMDNTMKLHYTRRLLTGTAAKFAKSLDFTAYHELKDSLIETFSETKSLENVYKQLRSRQL
GRNESITRYVLDMQALAWGTPVPEEDLVNIIIDGINDPINTASIRFAARSLTDLKRLLKRYEQIRPQHIATPSSSGTIRQ
PSNVSKTSDNQQAPAVVRCYNCSQFGHYQNSCPMPRRPPGSCFKCHQVGHAARNCPIKIIIPSAAAHYKDQGNEDQGTTL
DEFEQVSVAFQNQNDPSKVLTCVRSLLDTGSPVSFIDSSIVPKTLVKPPLTSRYQGLGNQMLVVCGEVSCKINLRKDEAV
HTFIILPSDSIAWPMIIGRDLLKKFNIFLYKNKSKIELNKGPTNLNRETCMSSLAQSIPLPQDTLDLVPFKLERLCPAEY
HDTQNEAFEEICAIDLSDDVSELHIGKHLTGHENSALLCSINQNYLNYPSEKIIPPDHSMKISLTHDTPLFTKPRRLSYG
ERNQVREIVNDLLEKQIIRPSNSPYASPLVLVRKKSGEIRMCIDYRPLNKITVRDNFPLPLIETCLEHLSNKRIFTLLDL
KSGFHQVKMHDDSIKYTSFVTPDGQYEYVKMPFGLKNAPSEFQRFINNILREFIEADKLVVYLDDIIIASVDFNSHLSTL
SAVLTKIRQNGLELRLDKCRFGQQELDYLGYKANSCGIRPSDRHIAVIKNYPIPTNTKQVRRCLGLFSYFRRFVPSFSHI
AKPLTNLLQNEKRFDFDSTCENAFKSLREKLILSPVLAIFDPKRETELHCDASSSGFGAVLLQKQDDGRFHPIAYFSKST
TTDESKLHSYELETLSIIYALKRFHVYVHGIPVKIVTDCNSLVETLKNRNTSAKIARWSLFLENYEYSIQHRAGSSMNHV
DALSRLESSCAVNEIDLDFQLQVTQARDSVIEEIKKNLELGPVAGFTLQDGLVYRVSPSKGLQLYVPREMSENIIRHVHE
KIGHLAVDKTYDKIGTHYWFPYMKSKVEHFIRNCLKCIIYSAPTRINNKNLHSIPKEPVPFHTLHIDHLGPLPSIRSQKK
YILVVIDAFTKFMKMYATRSTNAQEVCNILNQYMSYYSRPKRIITDRATCFTSNQFENFLEHNGIQHILNATSSPQANGQ
VERVNRVLRPMLSKLSDFHDHSDWSSQLRSAEYALNNTKHASTNFTPSILLFGIEQRSCEVDELEEFLDEKNILNVNRPL
IEIRHKASENIKRSQEINENYFNKNHKPATKFQKGDFVVIRNVDTTTNTNKKLIPKYKGPYVIHKVLPSDRYVIRDIDGC
QVTQMPYDGVLEANKLKKWIEPCLRV
>Gypsy39_DR#LTR/Gypsy 181-4938 [Danio rerio]
MALSNVEAFLNNPSLEQFDKCRKDELFKIAEHFQISISRQFLKKTIKKILYDHLVEIGVFQTTSENVTELDPNYSAERPC
SPESAGHGSNVTDVEAKVEAKVALPPFDPSTPVSTDSKTDGRLRLRLAKLQYETQEKARTHKAELDLKLEIRRLEIEADK
QVRLRQLELDAAAKAAMTSPVVSTDVLMPGQVIKPDVKSSFNQIDVSKQISLVPNFREDEVDSYFTAFERIATTLNWPKD
IWTVLLQCKLSGKAQEVCATLSVEESLKYDIVKSAILRAYELVPEAYRQRFRKHKKTPQQTFVEFAREKSILFDKWCSAS
KTADYSTLRELILLEEFKNCLPERVVLYLNEQKVTSLSEAAVHADEFVLTHKPVFPSARPESVTVTPPACSSSSRTLAKS
EIPKETRVCFYCRKIGHLINDCRALKNKNQKPKSVGFVQSAPENKEQLENTFDESYKPFVTKGSISITGKPEDQHIINIL
RDTGASHSIIAADALPFDEQTSAGSSILMQGIQMGIVRAPVHKIHLQCELVNDFVHVAVRPALPVKGISLILGNDIAGGK
VMPVCEVLDKSPMPSFCDKLSDAFPETFLACVVTRAQQKQTDNEITLSDSFMTVDDATVSNKVTNVEKQPLTEKCAFDNQ
VNLNLNLTREQIILAQQKDQTLSKCFKLVVPREQLKQKQVGYFVENALLMRKWSSAMEQDDEWSTVYQVVVPSVFRQQVL
VLAHDHVLSGHLGITKTYHRILKHFFWPGLKQDVARYCRTCQSCQFSGKPNQVIPPAPLNPIPIMMEPFERVIVDCVGPL
PKTKAGNQFLLTIMCAATRFPEAIPLRKITAPVIIKALTKFFATFGLPKVVQSDQGTNFMSNVFNEVLRSLSIQHCVSSA
YHPESQGALERFHQTLKSMLRTYCLDTGNDWDEGVALMLFAVRETVQESLGFSPAELVFGHTVRGPLKVLKEQLLDSESS
SKTNVTQYVSRFRERLRNACSMAQQTLKSVQGKMKKRFDVKTVVREFKPGDQVLVLLPIVGSALSARFSGPYVIDHKISN
TDYVLRTPDRRRKTRVCHVNMLKAYLVRQDQIEKKEVTKPIALMNMDFDISTEADEDGLVLRNAPQQCALLQNSKILKNL
SSHLTHLTETQKKDVKNLIEQFPELFHDTPTQTSVIQHDIVIHNSNPIKQHPYRVNARKRQIMKQEVEYLCENGLAAPSC
SPWSSPCILVPKSDGSNRFCTDYRKVNAVTVPDCYPLPRMEDCVDNLGSARFVTKLDLLKGYWQVPLTPRASDISAFVTP
DHFMQYKVMAFGLRNAPATFQRLITTVLAGVAGCNAYLDDVVIYSSEWPEHMSQLKTVFQRLANANLTLNLAKCEFAQAT
ITYLGKRVGQGQVRPVEAKVTAIAEFPTPNTRRQLRRFLGMAGYYRGFCKNFSSVVTPLTNLLSPSRQFKWSSECQHAFE
SIKALLCEAPVLMAPNFEKPFKMEVDASAVGAGAVLLQEDKEGIDHPICYFSRKFNKHQLNYSTIEKEALALLLALQYFE
VYVGSSSTPVVIYTDHNPLVFLSRMYNQNQRLMRWSLIIQSYNLEVRHKKGKENIVADTLSRPDT
>Gypsy39_AG_pol#LTR/Gypsy 1605-5111 [Anopheles genus]
RRCKFSNYCKLKPTELNAINGLPFYTTKLNGSNIKLLVDSGANKNFLNPELVPLTQRVKCETITIKNKNGKFKSQECTFI
TILDKKLKFYLFKCHNYFDGILGYESLSDMETLIDTKNHKLILPDRTIDLEIRTLEPPSITLNANNSQIIKLPVSQTKGN
IFLPKDIQIKDAIIPSGVYKAKQGYAKVLARNYGDTLTFHWTKPAKTYELDKMIEINHMSTHPYNDHPQNYIANLENLIR
TDHLNKEEKHKLFEILKQNLGIIHQEKEKLSCTTAIRHRIKTKDDIPIHTKTYRYPNIHKAEVNRQIEEMIADGIIQHSI
SPWTSPIWIVPKKSDASGKEKWRIVVDYRKLNEKTIDDRYPIPNIEEILDKLGRSMYFTTLDLKSGFHQIEVDKKDRPKT
AFSTEKGHFEFIRMPFGLKNAPATFQRAMNNILGDLVGRNCLVYLDDIIIFGKSLQQHLDNLNKVLKKLIESNLKVQLDK
CEFLRKECEFLGHIVTQDGIKPNPNKIEKILHWPIPKTTTHIKGFLGILGYYRKFIKDFSKLTKPLTKCLKKGSKITHND
EFINCFNDCKQMLTTDPILKYPDFSRKFILETDASDFALGAVLSQKFEDGKEHPIAYASRTLNETECNYSATEKELLAIV
WATKHFRPYIFGTVFEIRTDHKPLVWLRQKNDLNRRLLHWKLALEEFEFEIKYKKGTLNGNADALSRITENPALTSELNA
NTASNNTDTMTQHSADTNDDEFIPATEKPLNEFRNQIILEENNNDSREAITLFGNYHRITIKTPLFGPAMLINIIKEYAS
PKCVTGICCSEKILQNLQIIYKNYFSRAKSIKLFWTKTILEDVTDEIDQDLIIERQHNANHRGIIETKLHIARKYYFPNM
KTKITKFINICKICQKAKYERRPYKQKYQITATPKKPLEIVHMDIFIISDKHFLTLCDKFSRLTMAIPLQSRNAIHILKA
LTQFFANVGRPCLLVMDQECSFKSTTIKQFLEENNVEFHYTSVGQSSSNGTIEIVHRTIRELHNIISLRDSTKNLSTTSK
INLAVSIYNDSIHSQTNISPKELFFGFKNEDPIPEDLQERIKQKEELYRVYATKQKEKKSKYIEKLNKTREEPELFKDND
TIFERKRNNLKHEERYRETKVFDNLVTNILDRNGRKIHKSKLKRKRKT
>Gypsy88_DR_pol#LTR/Gypsy 943-4290 [Danio rerio]
SFSLHLSPAFGKRSVPYRQGRTVTGVTYSTSPSKCGLFLPITLTWADQRSQLQAFIDSGAAGNFMDITLAKDLNIPIDSL
PEPLSVTALDGRPLAPGEVTHLTSHLSLSIYQHEEKLCFHLIQSPEFPVILGHPWLLQHNPHIDWVSGTLLDWSPTCQNT
CLNLKPLNPIFESREPVDLSQVPAQYHHLKAVFSKKRATSLPPHRPYDCAIELLPDSCPPRGSIFSLSLPERTAMESYIE
ESLAAGIIRQSTSPAGAGFFFVGKKDGGLRPCIDYRGLNKITIRNRYPLPLMSTAFEILQEASIFTKLDLRNAYHLVRIK
QGDEWKTAFNTPTGHYEYLVMPFGLTNAPAVFQALINDVLRDMLNKFVFVYLDDILIFSSSLQEHIFHVRKVLQRLLNNH
LYVKPEKCQFHVTQVKFLGFIIKPGQIQMDPQKIQAMVDWPSPSSVKEVQRFLGFANFYRKFILNFSTVAAPLSALTKEN
GAGFHWGPEAEEAFIKLKKRFTSAPILLIPNPDKPFMVEVDASDVGIGAVLSQRGEDNKLHPCAFLSHRLTPTERNYHVG
DRELLAVKLALEEWRHWLEGAKHPFQVLTDHKNLEYVQQAKRLNPRQARWSLFFNRFHFTLTYRPGSKNLKPDALSRAYA
KSIIEDCKKSIVPSSKIIAPIRWDLEGLVRKAQTKDPDPGGGPTDSLYVPKVVRSKVLQWGHSSQLTCHPGSVRTLEFLQ
RRFWWPTIKRDVTMYVKACPTCNQNKSSHCAPQGLLHPLSIPHRPWSHISMDFITGLPSSQGNTTILVIVDRFSKAARFI
PLSKLPTAKETAELVINHVFRVFGIPLDVVSDRGPQFSSRFWQAFCQSIGATASLSSGFHPESNGQTERLNQDLETTLRC
MAANNPTAWSRFIIWAEYAHNTLRSSATGMSPFECQFGFPPPLFPEQEVEVAVPSALQFVRRCRQTWRKARLKLLKVSQQ
YKHQANRRRRPAPTLRPGQRVWLSTRNIPLRVDSRKLSQKFIGPFKIARKVNPVTYKLYLPKSLKINPTFHVSLLKPVLS
SPFSVTEKPPPPRSFGGQPVYTVRRILDVRQVRRTRQYLVDWEGYGPEERSWVPAKDILDPKLIQDFHKSHKSSP
>Gypsy-1_LG_pol#LTR/Gypsy 999-4922 [Lottia gigantea]
LASPRKPANEERKKVTSTNKPIFNKNCKSKRNSKNKKILEVNLAGNPSTCLVKFEKQYYRALIDSGAEVSLMHRRVYQNL
KYKPKLKKENVILRSVSGQSLTIDGSADFEFKIGNKEMKHKLFIVSSMNRNLILGRDFLAEKNVRIYFDLKCLRIYGTYV
PLQHDLHISSLVRLTENVVLHPQSSCMSVARAKCLNPNSPMLQIQGTDSGFMSKQPGIMVANALVATVNVERNNGRMPIT
IVNNTNKTMTLKRGCLIGQIDPVNHNDVSELVPPLDVNQVSNEQTNDCFKDIKMPNNHRSRLMNIFTKYRDIFASSDTEL
GQTDTVKMKIDVGDHPPIKLRPYRTPLNKTKIVDKAIDDMLGAGIIAHSSSPYAFPIVVVDKKDGGRRFCVDYRALNKIT
KINSYPLPLIDDLLAQLNASSVYSLIDLRAGYWQVQMHADDKEKTAFTCHRGLFHFNVMPFGLVNAPGVFMQLVGRVLEG
LSDFAVAYLDDILIFSKTPEDHFKHIKLVFDRLRQHNLKLKASKCSFMQEETKYLGFTITKSGISADPDKVRALKAMTPP
TTVTETRSFIGGMSYYRRLIPNFSKIAEPLIHLTKKFARFNWTTECQLAFDFLKNSLTTIPFLGYPNSNLPYVLYTDASD
TCIGACLAQVIDGVETPIYFLSHKLSSTQVKYSTVLKECYAIHYSLQKLDYYLHNAEFIIRTDHQPLKYLLESPFQNKQI
QLWALGIQGYNCKIEYIPGKSNSIADLLSRVPVATFDNLTDDDEEIEPRLNDNAFEINVINSNKVDTGNFADCDMNDNES
LSDPEDDPLKLDLVSEQIKDDELQNIKTELEKGNLKPAVNNKYIVVDDILYYISDPDGDLNLRLYVPKHLTSKVINQYHD
ENGHSGVDRCYALIRTKYYWKGLYKQLYKYVENCVTCQARSTTKNKPDLVETGIPPYPMAKISLDLSGPYPTSLSGNKYI
ASFVCMYSGWIEAFPIPDKSAQNVAHLLIDEMFPRFGCPLAIVTDNGTENVNKVMKETMQTLNIKHICTSYYRPQSNSVV
ERSHRTLHDILSKRLKSDISTWDIHLNQSLAALRFNISASTKQSPFTLLYCRDPVLPLDNILKPRRKFLGEGDFHQIALE
NQHRSFLQVYKNVKKAKKRQAKYANKNTKNIEFKVGDPVYYKNFLRKNKLEDRWTPYYRIVEKTSSVSYRIKSQLTGKTT
KAHAEQLRLAKIDEWDIPTDEQRLRQAKYVEPLSDSSSEGSASEYSENDELPLAQLIKKYRRVRENSSSESDIPLMELAQ
RIRAQDNDVIDDSNVESKSSSGDVSDE
>Gypsy-1_DSe_pol#LTR/Gypsy 1352-4504  [Drosophila sechellia]
MNRCSGKRHRNTGRAGCRGLLQFFRVKSLLPYITRTVAGGEIKLLLDTGTSKNYITPLPGLKGVVAAEKPFTVKSIHGFT
KINKKCMVSVFNVKTPFFILNNLKDFDGIIGLDLLKQVNAKLDFTGNVLNTSNGTEKIQFARAENVNFIKIDDGDVPLAI
KNSFDKMIVKNHKAFADPDEALPFNINTIATIKTDGEPVYSKSYPHPMGVTEFVNAEVKQLLADGVIRPSESPYNNPTWV
VDKKGTDQNGVKKKRLVIDFRKLNQRTVDDKYPIPTISTILSNMGESKFFTTLDLKSGFHQIELAEKDREKTAFSINNGK
YEFCRLPFGLKNAPSIFQRAIDDVLRDGISKICYVYVDDVIIFSKTKEDHVKDVDWVLRKLLEAGMRVSQEKSKFFKKSV
EYLGFIVSQGGLRTSPEKVKAIKEFPLPKTLFELRSFLGLASYYRCFIKDFATIARPLTNILKGENGKASKYQSRKIDID
MTKEQKETFNRLREILASEDVLLSYPDFKRPFDLTTDASGFGLGAVLSQDGRPITMISRALRDSEKNYATNERELLAIVW
ALKNLRNYLYGVKGLRIFTDHQPLTFAISDKNHNAKLKRWKGIIDDHGAKLVYKPGKENLVADALSRQKINVLNDEQSDV
ATIHSEQSLTYTIDITDNPVNLFRNQIIIEEGNSFSVDTFILFKSKVRHIIRISKRENLLNALQDVVNAEVVNAIHCSLP
ILAFIQHRLVELFPSTTFKHAKSFVQDITDATEQREIVITEHNRAHRAAQENVKQILRDYFFPKMLRLATETTLNCKTCS
MAKYNRHPSKQAVAETPIPSYVGEILHIDIFTTDGTLFLTCIDKFSKFATVQTVASRAIVDVKPPLLHIINFFPKIRTIY
CDNERSLNSETIKTMLLNHFNITISNAPPLHSTSNGQVERFHSTLAEIARCLKLETGLNDTTELILLATNKYNNSIHSVT
NENPIEIIHSKSAVFEGKISRKIKQAQEKTLDQVNKNRTYKDYQVGEKVFLKTNKRLGNKLSPLCSEETIEADLGTTVLI
KGRVVHKDNLR
>Gypsy-1_MH_gag#LTR/Gypsy 1386-2030 1 frameshift [Meloidogyne hapla]
MPVVTRQKARKDKALEQEEETDPTITNFVNSDMDENDILDGSEMGGNELSADLTPEEEQQLLDGNNINKKKNGEENPKKK
LNQATTQTSPAPINKNAQAQNRLLPQIPPQSAQNVVYPQQFPNFPVFAQQMPNFQMYPQFPSIPMGSQSTSIMPGAQQFP
NLMPVYTPQVMYPQMPFNQLQNFHPQANFNAPMNQTQNFPQPSPTVAQPPINTRNDQRPTTDFMGFMHSFDRMSLSWALD
KIQDLKGPEGVDQIKTFFKKFDSATEGISDVVRLKALESKISGRAERAFNTALGNSPFIYSSVRREMLRILETTDTKEIC
AFDELMSGVKRRENENIxANRIASLVKRAYPGMTNNLLDEYSIKHLIRSIGDSNLALNLEIARQDGMSFDSFVSLAARAE
STQKATRHINFQSKPVVQQFPQRNNNFTPRNEITCFTCGKPGHFSRDYYTNRNNQYGGKENMSGATGANKTFLNNKNNVN
EASQNTAFWRGNSQPRALPPSNNQLKNGCITIQDEIPENHVNSCGVNILEIEEELKKIPEQESEKVEIIKK
>Gypsy-1_RO_gag#LTR/Gypsy 171-1325 [Rhizopus oryzae]
MAYINGHFALANANMNANYRPALIDFHGYEGEDFRHFVESLESYFAINNITQEPRKLIILKAQLRGAAKVYYEKEILKRI
PGINYEQAVDLLKNYYITPELIQSYELEFNEMYQGEQEHPQIFLARLKEAADLANITNDAVIESRFRAGLLREIKQFCIQ
SSSKNLQDWINHAEGWWNANRPRKIAMVDNPFIPRNANQALIYHNENYDQHHPSSNHNIDLIDTNEHAMPALAYNQIHYN
NAQPSSNYYYNNAHGTNQLTTMDTSRNRNQLHQAQYIGNQHIRPNQQQDLIGLIQQAIRQELNSQQYQQQPTRNNRYNGY
NNNYNRSGRYGNNDNNGRYDNSNKNYMSNQRRSYDQPASQDQRQPNNQPINQHNNQQNKQTKNY
>Gypsy-1_MH_pol#LTR/Gypsy 2037-7094 via tfasty with Gypsy66_DR_pol (env included?) [Meloidogyne hapla]
SFEHCQNAIEFSSSMKVKESWRHTNVKLSAKIDELNKYIKQNTGNLSEKENSALKELIIDFEEIFALDDKELTQTNLIEH
QIETANAQPVKTRCRPIPYAYREKVALMIQDYLERGIIRGSNSPWASPIVIVPKKDGSLRFCVDFRGVNSVTIKDSYPLP
NIDNILLTLGGKKFFSCLDFLSGYWQIKMEPQSIEKTAFITEFGLHEFLVLPFGLCNAVATFQRFMNKLFEDVVNKFVFI
YIDDILIASESWEEHIEHLKIIFKRISEAGLKLKIAKCKFACTEIPFLGHILTREGIKKDAEKTKAVVNCPIPKTRKQLS
SLLGFLSYYRKFIHGFSTLASPLFKLLRKDNDFKIGETEKTAIELLKEKLLENAILYFPDFKEAINNPKRRFIMLTDASK
IGIAAILCQTDKEGNVRPIFFASRQCNKHEAKYCATELEALAIRFGSKKFFQFIAQIPTRVLTDHRALVSMFKSKKETGN
TRVDKWLLELNSRFTLQVEYNPGKQNIVADFLSRAPTWDESKIKEIDPPEEEEIAFVGQLTQIDIEEKEIEKREEWVEKT
KESEFSLLYEFLEKRNWPDETKERQKVINWCSDFTIIEGLLYKYENDGKIRLFVPEPFRNKLLSESHSGKCAGHLSGRKI
FKQLAVKYYWPNMQSECINSALKCRICAHSRNPKSNEPPMKIVRTSEPFELICLDILDVGPSNANSRYIFVAVDHFSKYV
IAVPIPDKSAESIAKALVENVILIYGAPKRIHSDRGKEFLNSIIKEITNTLKIEQTVTAGYDPNANGLVERINQIIIGML
KRSTASNWTWPERLPYLIFAYNSTPSETTGFSPYNLILGKPPNLPFEEMTLSVNPLYTIDDETYIQLFRENLLQLIDKAK
ENSEKAQEKSKKWYDSQPKVTANKFKIGERVMVIFPGKNRNAPHKKLLWNHFGPYKILEMNESSATLTPVDKSTEKIKVP
LERLIRVPPGVPDVATLPRGKNPFKNILMSILLAGIEQIENKNKQIELGIKEKNLGQEKSQKVFLLNASFSDENMELGTE
ELAWTKCSSNENLKVGDLDPVLNKETGIGARSINTAMKTLLATFLLRTNEIKATSAARNILNKILDTIPGTELIKYVEER
GDTVKSGLFPNEQQIESSLSIWFEYCQEARKTLEATKFEKIRMTIPEVVERMNEAEKRGWQNVFKIANKKLEKIRAITIH
KAKQLIHHQRVFVGDSSANQLSKIFNPSYFLGKEGGSLNEVIRKFNEAVLSSEVQVVVVMVGRDALLGGETVDQVIEEAR
RLKQLLERFNQIHVIWLPPPYVRQKHTEYEELLPRLIYLFNEEESDKFEFITTTTTGRSFLELTRFGNSFNGLMVEADGK
LKQNGIEAMKAWLVTQVPGFPGDHELGVRNVRSQVVVPVNRRREERTFRGRDYSRGRGLGDRTRSSRGQMERNFRGRGLG
DRTPRRSVFERIYRSPYRYDRSRSRRDVSRSRERT
>Gypsy-1_DFi_gag#LTR/Gypsy 2184-3581  [Drosophila ficusphila]
MPLARSPEVAQEERRAGHCFICLSSIEYTAQLLTTNCNHTFHRACFNNTNRKVCPVCRAPVESPETLDDSQAEQPSGSQS
LNREREAEAEMDSQEKAPNLGELMRAITDAMRAASHTQAEAITDMSDRQIQLISRAIESGFQRLSVQGRPSETRDRRQAS
AVNSPNHQGNINSQASFHSDASELRPDRISQIMTNWKLRYTGKGSLSVDDFIYRAEALTRQTLEGNFTLLARYSSNLFEG
GAAEWFWRYHKTVPFLTWSDLCVALRTQFKDARTDRDIQATIDQRKQKHNESFDEYYQVIAAMADHLSQPMSESYMLGVL
RSNLLTEIQHELLHVPIHSVADLRQAVRRHEIFKQNVSKPHITFSRQAPKRQVNEIDTQIQDQQDSEDPEVEEIAAIELK
CWNCDMTGHRYHDCTSERRVFCYGCGKPDTYRPTCRKCQSSKNWVARAPTNSARKMYPSSEQKMDQ
>Gypsy118_DR_gag#LTR/Gypsy 48-1022 [Danio rerio]
MSTTQQLDQSPSTSGEQQQGADSSPNIAQNQAMLMFPLMMGTPWCQKFSGEKTAQENNFQDWHNMQKSMFDMYPFSEAQK
VSALISNLDGEAKREVLALPIAERVTSGQILTFLKNNYGDTVPLATLRSQFFTRKQRTDESVRQFALVLQELSNRLESRG
DHTTGGYVLRDQFILGLFDAGLRRELQGMVRASSDIAFVDIKREAILQADAFGEVRQAVAATVQMKPTLDTTKLVEEIKQ
EVFLQLKGEIKEIVAGMMSEVREGVQNMWPKSEGVRPRYELMGGRRSSDQFDHQGRPLCRRCKQVGHIERRCRTVEGPQG
PLNL
>Gypsy106_DR_gag#LTR/Gypsy 141-1694 [Danio rerio]
MATVTPRRMLIFQIHKKLPVLSTSQLQLVARAIEDGSESTEGLSEPELYDFIIYYTRSERLKTMEDEGMAQLLSLQELLQ
ELTSIDSGSGEANVPAVPIDNALTHTHRQVSASAEDIHTYAMDKHKHAQPSHTDFHAPPSLSHDSPALTSPIDRTIYTPG
HLGDTGTRDTQQGRASLSSSVTDQVVRLSDVTALLPRRECKFHGGQISDTGSDISFSGLCKQIDTALQEGFSEVEIVRAV
LKITKSGTFREMLTNHDGLTVNGLKRLLRAHVRDKGVTELFHELSNAKQHDKESPHQFLYRLIGLKQRVLFESQQPGVEF
NYDKRLVQGTFLHSLYQGLNDKNSYVRQDIKPFLADTQVSDDSLLEQLTKSTMEEEARLKRLGAVAKSRSVTVSVAHSDI
TVPTDVTKQNPIDAELQANREAIRELTAQVSSLTQHMKLVNQPVDRPPTGSSSTPVKHPPSQTSEKKGRCPDCIMKEIIN
CPHCFACGQAGHRAIGCLQRRMSVNGKRSLEKGSQRP
>Gypsy-1_AA#LTR/Gypsy 384-5177  [Aedes aegypti]
MEGVNNDYSWLSFPTSQPMMPRIHRVQFASTPRSTVGENDGNYHVGQPRQQANNNLPDGDDRAPQQAEPSVASIPEAAEI
SEARGQGISGGSENNTAELLERNIESQNVLVDMIRTLNRRIEALERNVVDSRPGPSEQPALGPRNERPSSAAMHSEGRCD
PTILHAAPTFVNNPPEPENFMRFTAPNFTATVPPRLPQAYSTAFGDPTYAIYHPIGAPASRFAGLATGFSTSGHALNAGW
PGGSVPTGDNGLQPSFFQPMQGPHGIGSKHNTGTGGMAPTSLNEGQTSRIGLFPRPTFRGENDDRHPIEFLTEFDRFCYH
QGLVELEKLPVVLSCLTGEAKVWARGFEYLFRDYTTFVHHFKENFWGQTAQRQVSEKITRGNYVQRNGSRMAEYFLGIVA
KARYLTPPPTERELIQHLSRHFPRNVQHLLGSCMDIGSGYNILQSEDRFINGSLRYNNGLARENFNQPNWRNREAPSVRS
SRGAPNLNVGGIAGTNNVRMAMVEEEESVEGIDPAVLTVFVGREELLESESDTKVKENRKFKRSSYITVDLEGMQFNALV
DSGCELSCISIDLYDQLKKANITMPELPMKTISLRGAFGKKSKNVNLQVLLEISIGQRTFDVPFVVVRELINSMILGEDF
QDNYAVWIHQDEKKIRLLHNNVELWVDFSVGGKRSRCIEHVVLCETMINFDGEEDRQLEQDAAQISSLVLTEEERQVWKE
LQKEFEDIFSDQKPGLTSEYCHEILVEDDTPFNQKQYPIPFSRVSKVDEKLHLMEQWGVISRSATAYVNPLVTTVKKNGD
VRVCLDARRLNKVLVKDHEKPPNIQEILQKFHGSKYFSTIDLTASYWQIPIKHEHRKYTGFMHNSKTYVFNVLPFGLNTA
VASFSRAMDLILGPEILEFVEKYIDDLMVHSATFSEHITHLRRLFLRLRDAGLKVSISKSTFFQEQVDFLGHIIGQNGIS
IDPAKTAAIRNFPTPTSVQDLRSFMGLASYVARFVPNFAMKARPLYDLLQNHRTWSWGTSQARAFLELKDLFLEHTMLNH
PNFNQQFVVQTDSSIRGIGAVLLQKDEFDNNRIISYASRALKPAEANYTVTELEALAIIWALDKWRQYLLGRPIKIMTDH
KALIFLKQCKLLNGRLTRWILFLQQYDFEIEHVKGSTNTIADVLSRYPPGTRSQEVKDDESLFTIARLSASERELRASMK
DLEELQDQDLQIKKIKQSFSNTDVVTKGKNRYKMGDKILFMRTIKDGDWRIWLPKALIPNLLKVYHEEKGHFGVYKTTNS
IKRSVYWRGMRKDIKNFIKQCLVCQLAKNQNFKLVGKCRSILPREKNQIISVDLYGPLPIGTAGVRHIFVILDVFTKFVT
LCSIRKPTAPVLWRRIEKYIKDHGKPEALLCDQGTQFTSKVWAANCELQGIRLIHTCVRHPQANPVERVMREISRLCRTY
CQENHKTWANKIGNFAELLNAVCHESTNCSPYELQFGVKPTDTLRNLIKYPSGDAACVNLEAVRATMRRKANARNSKAPP
RTKVFRVGELVLLRANPMSSESEGEIKKFFMIYEGPYKVEKICQDDVYILTHPHHGKERGRFHVSSLKPYFGPNGPPQ
>Gypsy-1_DFa#LTR/Gypsy 1014-5092  [Dictyostelium fasciculatum]
MYVDTSFSLFDSPSLIDSGAAVNVISPSILGLYNIPYSKSLIPIMLADGSHTHVNGSISLDISVMGRSVNMPFLILESPH
KIILGMPWLLATNPSIDWTAGTLSFKDPATVATLAVPVPPVTCAQAGSRPISVTLLDHPIVHTTTSPSAHVTPYIPPPVS
PVAPSIHVTPSISPPASPIAPSIVSPVSPPIVSTVIPPIVLSVTPPVTSPIIPSSPLAPPVPPPIHVVVQSVIPELSVSA
IQRLFVDDDVDEFFIVKLYPSPSSNSGLAHVASVSSANPRFAKLLADYQDVLVDALPNYLADHRLHDMEIVEVDGAKPVY
RRNNHLSSEENNVMFTTVEKGLASGRIAPSKSPYNSAVLFVRKKDGTLRMCVDFRALNKQTVADRFPLPRIDQLIEKIAK
AKIFSKIDLKDGFNQIRIKDEHTHKTAFSTPSGHYEYTVIPFGLRNAPSAFVRAINAAFADILDTFVIIYIDDILIFSEN
ENDHYEHIKQVLDRLRSNKLFANKAKSSFLVKEVEFLGHLITPGYIRPLADKLAAVKDWPTPSTVTELQSFLGLCNYYRN
FIDHFADHAAPLYDATTKKTLSWSDSLSAAFGKIKSLLCECTSLFIPDMDGPFTVTTDASDFGIGAVLEQDGRPVAFESR
KMTKAERGMSTRDKEALAVYHSFKKWRHYLVGKDFILFSDHTAISRIEDAVGTDDKVGRWARFIGEFRYTFKHKPGKLNV
VADALSRRPDYKEAISSPIVDPHFNDRIKKGYKSDLFYSDIINGKSRLHFHVSTNKLVYFTGNDHRRLCIPNDPDLRKDI
IQAAHNTGHLGVDKTYWHLSQSVYWRGIYEDCKEYVIACQSCQRNKSPTSGALGKLHPLPIPHRPFHTVTLDFMVDLPPA
RGTGHNALLTIVDKFSKFVVYIPTFVNATAEDTAVLFYDQFYLRYGLPLNIVSDRDAKFTSNFWEALFKLLGSKLSFSSS
FHPQTDGQSERMNRVTNEMMRSHVNYKMDNWVELLPTLAFTYNTTIHSSSNHSPAHLIHGFELINPLRLLSSSDIDSDTP
AVNDFIDNRIMSWRHATQCLAEAQSSQKEYHDRGKVQESLNVGDMVLLNRKNITLAADSRRHSWKWYNKWIGPFKIISVI
TNHNDEKSAYKLELPDTMAIHPVFHSSLLKPFHHSSRFSDTTYQVSIPTSGLIEEHLIEAIVDFRLHYNKPQYLVKWTGL
DNYNNRWSTRDQIPTHILDEFEQLNPEHAMHNSTNKKSPTDDSTTDILSNDTTLNLNSTPNGHVDSSDSNVTVNLVPSVF
NTTQSPVITEAPDATPNPVLSKPLPPSILLRRILQKPVSPSATAKPPSPAPSITAKAHSPSLANTPASGKDFKVDNNIRR
>Gypsy-1_CR_pol#LTR/Gypsy 2664-6659 [Chlamydomonas]
MRSFCLSVTFIPRIGCGGRNPLVSRAVRAVDSIRGSLPHVQERKPTDTSAVFVAPQWPELEQYFTKSGFRLLKSYPTGTQ
LFTIAGSNLTTLAAPWPVQLWYDPPEPDAKLSAIAPKVSYTMTFRGRAGHTDVTTLVDSGACTVGTADGYISQKAATQMG
LRATSSPTPAVTLADGTRKALGGVVQTRLQMGAYHGTVHLLVLPDTVTGAQIILGTDWLNRHGALMDWESHTLTLRRGHK
RVALRPAYTESPDMLAGSVYADPMQVMDYVRALLHDASTPRNLISKNEFARCVTTYGEHAFLAVVRWPDPTDEAWTPTCA
LAAATLPTLGDTGLIPAHDLQNLLTEHADVFEELKGIRKDTTGISHTIPLVEGAHPPSKRMYRLSQGETTEVNKQVADLL
AKGFIEPSNSPFGAPVLFVQKKDGTLRMCLDFRALNKLTVKRNYPMPNIQDLFDQLEGAKVFSSLDLQSGYYQIPITKED
QEKTAFITPKGQYQFKVLCFGLTNAPASFQATMSKIFKKQLGKTVLVYLDDILVFSKTPEEHLAHLREVLGVLREHEFKA
KLPKCDFNKSELKFLGHIVGRHGVRVDEDKVKVVKDWATPTNLKQLRSFLGLANYFRRFIQGYSSLVAPLMALTGTKVPF
VWTPECQAAFEGVKVALTSAPVLALPRFDLPFEVWSDASIYGTGAVLLQDGKPVAYTSAKFSSAEHNYTTTDQECLGVIH
ALTEWRCYLDGASHVTLVTDHQPLTYLQDQKSSNLLSRRQARWMEFLSRFSFTWEYRPGRINVADPISRIWEPMCAALTR
SEISSDLLDRIRKGYSGDSLFSDSRASASLQLKTSAGLWYRDTQVVIPAADGLRELILTEFHNSPTAGHRGARRLKEAIS
RRYWWPRLDADCTEYVASCPDCQRNKPSNQKPAGKLQPLPIPEANWDSVSLDLITKLPTTLAGHDAIVVFVDRLSKMTHF
APTHSDVDAEELAEIFLQYVFRHHGLPINLVSDRGSVFTGRFWKELFSRLQTKLHFSTAYHPQTDGQTERMNRLLEETLR
HYIGPLQDDWDKHLPLIEFAINNSQSGSTGATPFELNYGRRPRVPGDLALPSSNVPAAQNFSDAMRQRMAHAKKCLRAAQ
DRQRVATDSCRRDSKFDVGDDVLLSTKNIKLRIPGAAKLMPRYIGPFKIQRRIGAVAYELALPPGYKIHNVFHVSLLKAW
KPGQAYNPPPAILEDNGDTYWSVESLLLHRDRKCGRKTLREFLVKWEGYGPEHNSWEPEANLRESAPLEEAIEEYLARTA
TKQAAREKRINTVAQRRADRKAAATQRYATRKATPPAAPTKAPRQTRGRAT
>Transib-6_HM#DNA/CMC-Transib 1043-2989  [Hydra magnipapillata]
MNRRQLYIYIKETDCNKNDLLCKLVEYVENVSPNTFLDIKPTLSSFVHQYKRKMTTVKREYTQFENKYATWLDAIISFKL
IKAVTPEKNYGGRPETPFNKSSIRSKDRKVSNIIHMYSTNEILYAASRSLKKDGRNAEAISVKSILYTPQASLFSDKALA
LFLDANLSKATYQLLRNNALDLDSAIYPTYHDLKSAKDRCYPDDVIISDYSAEIPLQSLLQHTSQRLCDSQIEVLTADSL
KIFKKLTLRSKIGFDGATGLSVYKQSSTDEAGRSLANEVSLFITCLVPLDLYFFTDAKRQLVWRNHKPSSPIFCRPVRFK
YIKETKEVVLEEFESIKNDIKTLPVSKVIIAGQTLDVHHIIDITMIDGKVQTIISTATTSTQCCSVCGISPKFMNDLPIV
LKKEVKNENLQNGISTLHAWIRLFECLLHIAYKIPIQKWQARGVDDKAIVATRKKKIQVAFQNEMGLVVDQPCSGGAGTS
NDGNTARRVFQQAEKSAEIMGVSPVLIRRLHSILSVMSSGFDIEPNKFKKYCFETAELYTQLYIWYPMSQTLHKVLIHGH
LVIEFFSLPLGMMSEEAQEASNKYFKKYRECFSRKCDRKKTNLDVFHRLLCHSDPFIAQYRKTNSTRKAILPADAIALLK
EPSIICSL
>LINE1F_MT_gag#LINE/L1 1-1617  [Medicago truncatula]
MSSEFVFSAQGEPSFEKPPDPPKAKLSFRDKLLGTQNAIPSREKENLIEKNLVRIELENGNRLLPKVFLEPKTFQELCTP
WKDALVVKLLGKSLGYNTMKERLQRTWKLQSGFEIMDNDNGFYMVKFDQEADKEKVITGGPWMIFDHCLVVTHWSPEFAS
PEAKVERTVVWVRFPGLNLVYYDESFLLAMASAIGRPIKVDTNTLKVERGKFARVCVEVDLTVPVVGKIWINEHWYKIQY
EGLHLICTNCGCYGHLGRSCSVKPTKTATSNPHHHPTAATQQENSHHSQREPATISINSMSQNSNGNEINAINEVEPILN
GGVITINEGTQELHGDWLLVSRRKKPANIQQSTHSKNASQNKANRFSVLTNTAHQSKPNSYPSRTSIQVIPQNTKNSTDL
KRRRHNNDNDDIIIQNLSITPKAILKSLHKSLHKPVLDKVIPDVTNLTQVNHKKTTMDPPHLSQPDSATPPHNNNPITPT
PQINTPRQHANCSGTNELDVQDLEDEAMASQDNLQSMQAHETSEGKHKASSDTKEDMIT
>LINE1C_MT_gag#LINE/L1 4-1596  [Medicago truncatula]
MSSEFVFSALSDQNLQATNKPPDPYKPSSPKISFRDKLLGPSQEPMLREKEDMIEKNLVRIEHENGNRLLPKVYLEPSVF
QELCTPWKDAIVVKLLGKNLGYHTMKERLQRTWKPQGGFEIMDNDNGFYMVKFDQAANKEKVITGGPWLIFDHCLAVTHW
SPEFASPNTKVDKTIVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKIERGKFARVCVEIDLTMPVVGKIWVNGH
WYKVQYESLHLICTNCGCYGHLGRNCSSTRHLQPSTSSEPTPSAVHQPAVVSQQTRSTPTSDEHLIQNVQKGTTVTISSK
DSLPNDDQLNAIDGDNHVLHGEWSLVTRKKKPTKNIIINPQKTVTTKNNRFNALNHLTTRNKTGLPLPNNQSRPIIVQRC
ILQVPKDTKHRRHDTMATDEPVFDFSQVNPLVLSPPHSHKTTPEPHVPKTTQQLPTKQTTTNEVQENDPTLVNNPTPEPD
PNSSFMLATPIPNDQEANHPTKDQIGETSYHKDDVHQNLDTQETQDEEMVT
>LINE-6_OS_gag#LINE/L1 443-967 perhaps nothing [Oryza sativa]
MLHEASVQHSIYSPDNASPRAASPVFVLSSFAEQGTPHSNGVATDVQTQAGPMARQGNRVEEFFSALSTPLQQPLLPAPD
VNARRPSRAKVTIPAISSAQCHSERLLCKKRAGAKLETLAQEILSNKFGILDDHASFDDNIKKIYLQRYKKPLSPSSLKT
IAELVEKGDARPSV
>OSLINE1-5_gag#LINE/L1 3-854  (fragment) [Oryza sativa]
AAYTHEGHVTQPRSSSIKHSTFGHVRSPCTPLQVYRRKRSKSLPPLSSSHTPVLIASTLIPPICISNGLVNLEEKTEGLR
RSDRCNAAISSNGIAAADEDSTTKAKCRAAMRNLDGPMMSKTADLAKSSLSSTSYLDPSIGMHSNLPSSSIVYLSNEQFS
SNLGKIGVSLGSGSENVAFSVNAIKHMEVDRWKVAPKPKMKAKVIDEANDQNPFHDGDDEDAEPDGILLAHLVKEVSEVD
LDDAELSRTICDLIATPRKSKSASKKKGQSTRTKSNKNKKGCK
>OSLINE1-4_pol#LINE/L1 964-4635 via tfasty with LINE-1_OS_pol, 2 frameshifts and 2 stopcodons.  [Oryza sativa]
MKGLFWNCDGFKDPKKHKFISDLTKEHHLDFIALSETIKKDFSPAVLKNLCAGKEFLWHCKPPRGRSGGLLLGINLINVD
IGLIDEGDFYIKFHLCNKVDKFKWALVLVYGPAQSEFKDQFLAELVNMCSHETLPILIGGDFNILRSSDEKNNDNYDDIW
PFLFNAIIDGLCLWELQMSGRKFTWANNLVNPTYEKLDRVLMSTEWEHKFPLSSVVALNRDISDHTPLLLNTNTSSLSNA
QHSFKFELGWLLRDDFVDMVKEIWSSVDEGNSAMERWQAKIRRLRQHLRGWSKHTSGLYKKEKKKEILDKLDLLDKKAET
MLLSQEELDFRWFCRNRLSTILREEEVKWYQRAKSKDILEGDSNTKYFHLVANGKHRKTRIFQLHDGDQLINGDANLKSH
ITTYYKGLFGPPYDSTLQFDENKFADIPQVSQLENEALTQVFTEKEIKEAIFQMEHNKAPGPDGFPAEFYQVFWNVIKCD
LLDLFKEFHNGTLPLYSLNFGTIILLPKCVEAMTIQQYRPICLLNVSFKIFTKVATNRVMTVAQKVISPTQTAFIPGRNI
MEGVVILHETLHELHRKNKSAVIFKIDFEKAYDKVKWSFVQQTLRMKGFSPKWCEWIASFIQGGHVGIKVNDQTGNNFQT
HKGLRQGDPLSPILFNLVADMLALLIKRAKDNGSLHGVVSHLVDDGLSILQYADDTIIFLEHDLQQAKNLKLILSIFEKL
SGLKINFHKSELICFGQAKECYEQYSNIFGCKLGSFPVKYLGIPMHFRKLCNNDWKVIEQRIEKKLSSxKGKHMSVGGRL
VLINSVLSSLAMFMISFFEIPKGVLQKIDYYRSRFFWQGDDHKKKYRLTRWDIICQPKExGGLRVHNLEIQNRCLLSKWL
FKLINENGVWQDLLKRKYLYNKFITQVDRKQGDSHFWSGLMKAKKTFLTMGSWIVNNGEHIRFWEDRWLGNTAFREKYPS
LYAIVSRRSSSVASVMTSVPLNVSFRRALVGQNLTLWHELCASIVHIQLNNTSDYFRWNYHQNGQFSVRSMYLALINNGY
IDRNKLIWKLKMPLKIKIFMWYLLKGVVLTKDNLARRNWTGNLRCCFCTKNETIQHLFIDCHFAKFIWRAVQFSFGLYIP
TSISHIFYDWLQGVINKKSKLILVGVSALCWALWLSRNDRVFDKSPTITYMQVIFKATYWLRLWAQLQKCDEDADFLIVA
CRKVETTVMQLFANHGWRFTNRLE
>LINE1-38_ZM_gag#LINE/L1 863-2686 [Zea mays]
MLGVSAAQGNGGPASSRRKRWRKKKRXEREDEPALEILAPPPPXQMLPASDXTACVIDWSVQMSIAEDNLKTAAVITVVX
SRDISABEIVXVLAPRLEMEXGGLVLRQFSQSSFLAVLPNXVQLDTLVDRFXIIREENFMLSSRRWTRFGGAXGNSLKHL
VELELRGLPVHAWETSVVQXLINPHACISQVLPDTLEIRSLEVFRCLAWCCDPERIPSKKDLWITEPDQASAAEGKKALV
YPVQIRWVPADLSLXPGAPQPPVGGXDQDKXDTPPSRRRCGDNPPXTQHXAIXEXPGXKTHTQRRPVHDRLGPLRRSDSP
RELSXPXVLXDTEARSSQPCXLXDAVVXSXVGNPPXPVPDGXXCLAAGDVLLRREXGCEDAEVIPMTPLAXSSXCPSSGG
RRRLLLKTATKQAKFRNPPIAFFRRRRRAPXTPEGAXXPPXSSGDRGAXSSLGALPPAPTAGVAASPLPHGPPPXXXSHG
SPGQQBFLRRVSKAVGAVLPLPKXVTGGRRRRQPTXPPDAIRRSRRVAGLGVEQVQHIPKARRTIMKSILAEXDSEHXSQ
QNLDAYAKLFQAPLSRAQVEALAALFGWVMPDDEGEXVPPGTATLVC
>LINE1-6_OS_gag#LINE/L1 6-2126 [Oryza sativa]
MLGLGFMRHPGDRAAAELSRVARWVWMEISSNMLLMSPGVLPAVGCSGGDFLPVLKRDLVGWLDHTRIGDKLKAFPLGGL
IYGKGSFSAFHIVPVDLWPLRNSGRGRRLNLFWHPKFELYWNPNSVALQYKYKAQWWPKVRFKVFPEIGLGVVNPVSLFV
GSSGSPMAANVGGGDKGIVIGIISHPKPTSGNETDAVILDRIPLKMIKGAAGTSDQGQEHTTAARRGSAENNQVDATQGP
TVFTEGDLVEDDEDVVVVNIEDDELQTAGLWTILARFYSLRTPNQVALFDDMRRAWRLRADISYKSLRDNMFIITFSAEG
DYDFVIKGGPWIHRGDALLVASFDGITCPSNVPLDVVPIWVRIYDLPLVLMTKVRGEMFGSKLGKVREVDVGDDGRNKHD
FFHIRVDLPVKRPLKSQIAIRMTVQGKEVLRRFDLHYERVPHFCFICGFIGHSDRDCNRRSANEEQPFQFSAELRCSPLK
PFEKKISKVKAAQTSSVARNLFFRGAGSASSLSSRHKQDGQMQEAIPPRVDAHDGFEFKEREGDTAIDEMLAQQAGKMDV
TGDKTQGTSMVVPAGKLAQQQSEKEAPKKTDGDEISASEMIPAMRNLQQQASFGEVSSEEISDANRKRMPDQSGLQIKGR
VQQALLEYQQYTGGSNSMHGDIGKAARAVKRLKKAVEGEDTDDMEATSHGAAGKLTGPVIGSRQEQ
>LINE1-5_SBi_gag#LINE/L1 2-1980 via tfasty with MIUSE1_TM_gag, 1 frameshift. [Sorghum bicolor]
VFRFSVANQQVGFHIHRLRAFECQDFKIFFHLWHNGGPNFRAEYKSWCREQAAEWIEVSHRKSVRLTGANAIPLLASRSS
LPASSSKSMEFSNFQKPLNCAVNSVFKRGAIHGIKRGAIHGTQKNASFLEAGILGPIPDPQRVHKSHGPLLTLCSICLSP
AHSRPGCKNIRRCRICLLAGHDSGQCRLVPRPAPFPSIRRDASTSRVHRPSTSLIGGPPLSRDPKIYRSVIEFIREFSGI
HSPPSPIVIPWKLSWRLRAPEFIDDVDEESASSPSSSLVSALPFFPQRSCPALFSLIPPSVHISWFLKTPLSATVNPNRG
AMAYRFVDPAPFMPTWGQRVLVPGRPTMRRVVTGALKHVNNDLAIAFINPLPQAQLDFPAIRATLAEFLNVQMGIPYHSI
QPCPFGQAYVTFSRVSHRDAMISNGPHVFGNTQISFIPHDKAWNNRTAIFTHEAWLMMLGLNIDAWSYTLVEKAVSSFGK
LIVWEEDHNNMARALVKVRVSGLDEIPWFFNFSEGETSESDSWTVQCEIISATMLGAQAQDEDFPPDDPEDLDPNHFEFF
GYGQPGQGPPPPPFGNGNAGNGNAEGWVPWDQPNANNNVAQHPNPNQDEAPPLIPLQQVLLDHGNNNIMRLATMRMVSLR
KKSYKSIILLLLTNLKFLIK
>LINE1-7_OS_pol#LINE/L1 3629-7180 via tfasty with LINE-4_OS_pol, 2 stopcodons. [Oryza sativa]
MVVQNFELLSWNVRGLNSPAKCSAVHDFMAEINCTIACFQETKLRAMDDGLARFLSGYKLDSYAIKPARGTxGGFLLMWN
SNLVDINEVRLRRFSMTARVNLLHNSETFFITAVYGPTRHREKDAFLRQIKRLKLADREPWLLFGDFNMIYRACGKNNNN
LNLRRMSRFRAALEHCELKEVHLQNRRFTWSNDRRKPTLVRLDRFFCNENWDLGFGHHILHALSSGTSDHCPLLLTNPQG
PRRLRSFKFENFWTSLPGFKDEVQNLWCQDSTHHEPLHRLVDKLSRTAKALKFWARGICSEAKLKYLMALNVIHRLDVAQ
EHRDLTQAEYRLRLGLKRRLLGFAVIERARKKQASRITNIKEADANTKFFHRKINARRRKNHIHRLKKHNCWAVTHEDKE
STIAEHFRHVMGRPEPRSCDLNWPILGYTPIDLSGLDDPFTEVEIHKAIKEMPIDKAPGPNGFTGKFFKSCWDIIKNDVV
AAFNALHDSRNTHFNLLNSANVVLIPKKEGAEGIGDYRPISLVHGLGKIFSKVLAIRLQPLMQSLILTNQSAFIRGRSIH
DNFMYVRNMVRKYHRTRRPILLFKLDISKAFDSVRWDYLLTLLQNRRFPPKxREWITGLLSASTSKIILNGTPGEAIKHG
KGLRQGDPLSPLLFILAIDPLQRLLDKATELGAISKLRGKAVRFRTSLYADDAAVFINPNKEDVKAFTDLLGRFGHATGL
CTNLQKSHVAPIRCHNLDLDDILMDTPATRANLPMKYLGLPLTTSRLRKTDLQPLYDKSMSRIVGWRGRHIGLVGRSTLV
KAVLTSQPVFLLTGLKASKESLKVLDKQRRKFLWAGGEALTGGECEINWTRTCLPTASGGLGILNLEKFARALRLRWLWH
EWKSPGKAWVGSGMPCDDTDKLLFAAATTITIGNGAKISFWESSWTQGRRLKDVAPLVYAASKKKNRTLQQASQANQWLL
DLDLPGTAGWTTNLIDQLVGVWSAVQAIHLVAHEEDNITWKLTNHGEYTASSAYNAQLLGTTATNFNRLIWKAWAPCKCK
TFAWLIIQNRVWTSDRLATRGWPNGSICPLCRQTQETALHLLAECRYTRRVWAALAEWATCEQLNPSQWRQTSTVLDWWE
ATANIQETPKKALRTLMLLVAWEIWNERNRRTFQQKELSATSLLAKIKEEAKTWALAGARSLNS
>LINE1-16_SBi_pol#LINE/L1 3232-6776 via tfasty with LINE1-42_ZM_pol, 1 frameshift. [Sorghum bicolor]
MANTTVICWNVRGLNATARRDNVRTLTADVRAHIVCLVETKLSTVNHWLIASMLGNNYRDFAYVPAASTRGGILIAARFP
EVELKEPTIGCYSCTVKIVPAVGDPWWLSVVYGPQEDGDKSLFLEELEAVRDHCPGPWAITGDFNLILDEEDKNNARINR
RMMRAFRHTVANLQLLDIHLHGRRYTWSNERENPTLVRLDRVLVSLDWEGMFPACHLQALASDASDHCPLLLQTNLAIHP
KPRFHFEAFWPKFADYQEVLQQAWTCDEVILDPIVRLDFLLRKLARELRSWAARRIGIIREQLLMARTIILKLDQIGDTR
QLTDSERALRSDLKYKCLGLSSLDRTIARQRSRVRFLADGDANTKFFHMMARGRRRRNMITRLRVQGAFTADQKEMEQAI
HDHFMGVFGTAGQSDGTIDFQAIGIEAQDLEALEQPLSEEEVWNAIKELPPDRAPGPDGYTGAFYKHSWGIIKPEIMAAS
TPCWFGDCRSFGRLNGALIVLLPKTAEACEPAHYRPITMIHSFAKLISKILALRLAPKMHTLISPEQNAFIRGRSIHDNF
KYIQRAAVMLRKKKRPKILLKLDVAKAFDTVLWPFLLDVLQAMGFGVRWRRWIATLLTTASSSILMNGQPGKRIRHRRGV
RQGDSLSPLLFICAMEVLGRLFAAAREEGVLRSLDNDGIRFQCSMYADDVILFAYPDADEAAAIKGLLRIFEEVSGLKTN
LAKCSITNIYGAEEAIADLQLILGCQVAPFPIRYLGLPLSTAKLPKAEVRRTIDAVARRLPACQGPLMAKSGRLIWVKSV
LAAIPTYCMMADGLPPWARAEIDAVCRRFLWCGKDGDVRGRCMVAWKTCTRPKELGGLGIPDFKLVNTAFEVKWLWLQSS
DASRAWSELPLKQSAEARDFFRASTQTIVGNGRGTLFWLDSWIDGVSIRTLAPTLLKFVPRRVANRLTVAEALPDRHWVR
TIGGGVTAPAAAEYLRLWHAINGITLNGNQDRMIWRWTSDGGFSVQSAYQALHLGSHPIPGCVRVWEVWAPMRVKLFLWL
AIRRRHWTADRRRRHGLEARSACYLCDQQGETIDHIIVECPFARQLWVDVAAALGCHIQEQPAGAIVEWWEVWRGLWPSE
YTRGADSLLALIAWELWKERNARCFRGANTQLSAVKDTIRGQAELWISAGAKNLGRLVQRIG
>LINE1-14_SBi_pol#LINE/L1 3271-6918  [Sorghum bicolor]
MMVVPHCLSTDSFQWLSMNSRAWNLLCWSIRGVNDSDKWDHIRNKIEESNANIFCLQETKRDFFDLKFIRKFAPKRFDKF
DYCPSVGASGGILVCWVSSYFNIVTLEKHRFAIRASVTSTHDLCLWTLVVVYGPCRQPARDLFVNWLYNLSIGDDDLWLI
VGDFNFYRSDENRNRPGGNFNDSLIFNNIISRLGLIELPLKGRSYTWSNMQDTPLLEQIDWFFTSVAWTNQFPFSLVLPL
ARTTSDHLPCKVQIGTNIPKANIFRSENFWFNHPGCIEQISNAWIIPTSCSNSAQVISAKFKLLRRILKLWAKKFSNLAK
LIENCNLTIAFFDRLEEIRRLSNAELVFRKMIKTHYCNLLAMQNTYWKQRYTQRLVQFGDENTKFFHAMASERFRRNIIC
QVSDESGRTVTDHTEKSSLFYQEYRRRLGSSVGISMQFNLQQIVQPSSDLGSLCLPFSKEEINDIILDLPNDKAPGPDGF
NSLFFKKAWHIIREDVYRLCTDFYHHRADLKSINYSYITLVPKKDNPETVNDFRPISLLNSSLKIITKILANRLQKKALK
VVHSNQYGFVKGRTIQDCIGWAFEYLHQCHHSRREIVILKLDFEKAFDLVEHKIVVEMLRAKGFPSRWITWIKDILSTAT
SSVLLNGVAGKEFKCKRGVRQGDPLSPLLFAIAADLLQSVINHEMSLGNLLPPFPQDSDVPFPVVQYADDTIIIMQGCEQ
QLLHLKGILQQVTLSSGLKVNFHKSCLLPINMDSDKATLLANSFGCVVGAYPFTYLGLPMGLTKPQVKDYAPLICRIERR
LSASSQFLSYAGRLQLVNSVISSLPTYYMCSLKLPVTIIEIIDKHRKNCLWRGSEFKRKGYNLAAWDLVQRPKSKGGLGV
INLSLQNNALLIKHLDKFYRKDEIQWVKLIWKKYYVDSVPHLAREKGSFWWRDILRLNVQFRGVASCSPGRGDTISFWED
IINGQVGAEVFPNLYAYANNPKVSLWKLRNSGDLLHNFRIPMSRQAYNEFLLLQNAVSGLPPVSPHVRDVWHFIWGTQSY
SSHRFYQHHFSSLQPQRSVVWIWKSKCLPKIKFFGWLLLNDRLNTRNMLRRRNKFLEEGYNCVLCQNHVEETLEHLFFDC
PAATARWFAIGIAWDDAPSLHERIYRAKDVFQGPLFMEVFLIAAWCLWNERNGVIFNKKVPSLGSWKDAFKEETKLLLYR
IKSSLHPTILSWLSAL
>RNHAL1_gag#LINE/L1 1131-2186 Almost identical to L1_RN_gag [Rattus]
MARGKRRNPSNRNQDYMASSEPNSPTKANTEYPNTPEKQDLVSKSYLIMMLEDFKKDIKNSLREQVEAYREESQKSLKEF
QENTIKQLKELKMEIEAIKKEHMETTLDIENQKKRQGAVDTSFTNRIQEMEERISGAEDSIEIIDSTVKDNVKRKKLLVQ
NIQEIQDSMRRSNLRIIGIEESEDSQLKGPVNIFNKIIEENFPNLKKEIPIGIQEAYRTPNRLDQKRNTSRHIIVKTPNA
QNKERILKAVREKGQVTYKGRPIRITPDFSPETMKARRSWTDVIQTLREHKCQPRLLYPAKLSINIDGETKIFHDKTKFT
QYLSTNPALQRIIKGKAQHKEASYTLEEARN
>L1-10_CQ_gag#LINE/L1-Tx1 121-1092  [Culex quinquefasciatus]
MARRINTFRIDYSMIPKKPSFEEVHEFIATVIGLKREEVERIQCSRTHGCAFVKTTDLAIAQRVVEENDNKHEIEVEDKI
YKLRIVMEDGAVEVKLHDLPEDIQEQAIVDFLSAYGEVYGLRELMWGEKFAYDGFPSGIWVAKMKVKQNIPSYVVIDGEL
TALSYYGQKQTCKHCQDYAHNGISCVENKKLLVQKTYADAAKQVPSAKTSSTRESKQKKTKKPMQKSVFTKLTDSKKTPP
GSSALALTPAVKPTAQLATTSKTDLTNMLPPKTTLVLAKKTVSEGYDTDTSTTSTNSKRSLRSGSGAKKVRPNDEDNDMG
DDAL
>L1-5_CQ_pol#LINE/L1-Tx1 1199-4372  [Culex quinquefasciatus]
DFSSYNLATININNITNATKVDALRSFIRTLELDIVFLQEVENERLAIPGFNVICNVDHARRGTAIALKEHIEYTHVEKS
LDGRLIALRVQNTTLCNVYAPSGTALRAERERFFNGTLAYYLRHNTDHIVLAGDFNCVLRPCDSTSSNPSAALQTAVQQI
RLHDVWLKLHPNTHAPTYVVHNAESRLDRVYVSAGLCDQLRTAATHVCSFTDHKALTVRICLPHLGGERGRGFWSLRPHL
LTQENKEEFAVRWQYWTRQRNRYRTALDWWISFAKPKIKSFFKWKSNEVYRVHHARHQQLYAELREAYDAYYQNPAMLTT
IHRVKAQMLTLQREFSQNFARVNETRVAGESLSTFQLGERRRKKTTITRLKNARDEVLQTQPEIEQHVLQYFTELYAADP
ARAPDIDAGLGCERIIPVDDDANASLVEEITLEEIKLAIITSPKRKSPGGDGLTAEFLNWAFDVIYRELHAVMNELLVAP
VPAEFSEGTIVLVKKSGRSAENISSYRPISLCNTDSRVFSRIMRQRLTRVLQAHNVLTDSQKCGERRSIFQATLALKDRI
ASLLARKVKGKLISFDLDHAFDRVSLPFLYRTMLSLGINPDFVSLLERHFSRAGSRILLNGFLSPRFDIKKSVRQGDPLS
MVLFSLYMHPLLLALERICVGDLVVAYADDVSVVVTATETIEAINQLFGRFEIAAGARLNRQKTVAIDVGHVEGRPLVVP
WLRTVEKVKVLGIFFANSIRLMIKLNWDAQVTKVAQLIWMHSMRSLTLQQKVILLNTFITSKVWYLASTLPPYQVHVAKL
TATMGTYLFRGLPARIPMQQLARRREDGGLKLHLPAIKCKALCINRHLQEIDSLPYYKSFLDRAIPPPTSLPCLKLLCEQ
TPLLPAHIQNFPSSDRIHQHFLDGTERPRVETKQPNLNWRRLWKNISSRRLTSGERSALYLLVNEKTEHRRLMHVIQRAD
GPNCQHCAANEETLTHKFSECPRVAAAWAHTQRRLTAIDGGRQQFSFGELFRPVLNGIADGRRARXLKTFISYIVFVDXC
ATTAIDVAALDFELSLVG
>L1-56_XT_pol#LINE/L1-Tx1 1577-4954  [Xenopus (silurana) tropicalis]
MLIKCGSLNVRSIKNIGRRNGIFDFVATLNTDFFCMQECGIEFCKNYKLLSDSWKWGPSFFSGENNIKNSGIGLLIKGDS
FVFESYFEIEPGRAFCVKGCFGGFKVKIMCVYGNTGKNDRIKLFEKISYFLVGSEPIIVLGDFNCIIEGKDRIGSNKLDK
SSIVLKKLIKDFDLKDAWRLKHGDKSGFTWANKNSQSRIDFCFCSNEFQIHDFELIISGFSDHKILCVSMSAENITSTAR
RPWKLNYLLLEDARICELFENKYKFLKSMKETFVSKSVWWDWVKNECKLFFIRNGIKKKKKEWSHFKLLNSRLQGMLAFR
ELGYDFNKGIDDVKKDIKKWIERRGKEIIFNSRVKDFEENEKCSSFFFRCVKNKNNNQIVRLNGINDINYILDVVFNFYN
NLLGKKEIIDKSFAEMFLNNLNRCLNLNEQKVLKGEITMFELEEAVKSFSKNKSPGLDGLTVEFYLKFWDFIKYDLCDLV
NECFKKGELTQSQKEGLVTLIYKKEDKENIKNYRPITLLNVDYKIMAKVIANRFRKIINIVIEEGQNCAVPGRMIWENVI
LIRDMLYDVLDRDQGVSLFSLDFEKAFDSISHDFMFLVLEKMNLPIDFIKMIKILYNKVESKVLVNGFLTKKINIQSGVR
QGCPLSPILFICIMEPLVQFFRRDKLIKGIKIPGGGGKEVKCLAYMDDVVVICRNSTSINRVCFITGCFKCISGLSLNLS
KSTCCAYGNWNFDMFCKFKVIKSSVKILGITFNQSLSGEDDWAVVLSKIRKKLGFWKLRNLSIVGKVLIIKAVILSLLLY
VSIVFLPSDLYMRKFIREIFVFIWGSKMEKIKREIMYKDTDNGGRGVPDLRFFLSLKHAAFIFRLLKKESIVSNFIKYSG
GWFFNKYKWLGIDLNKPRAFKISRFYVILEKIVRKYNLNTFDFTELVNAKQIVKSFKKNELIYPVEKFNAKISKNIWNMV
LNKNLTNSQKDLAWAVVHDCLPVRNFQYLRGLLNSPKCPRNGCVYDETVMHVFWNCSFSRMVWEKMRGFLKYVGELEFLG
YEQVFFGLNLKCKNGDAIKAWQIINVTKEAIWKCRNILVLRRDELTVTDCIKFALSNLYILYLVDKKKFGMSAMNEWKVK
DWYKFS
>L1-Tx1-1_DR_pol#LINE/L1-Tx1 1185-5094 via tfasty with 34392563_Dre, 3 frameshifts and 3 stopcodons. [Danio]
MSLKHWVFFLSYFFLILVYFSSIIMGLMKIGSFNINGARDQNKRAILSEFLRMNXIDIIMLQEIHSDKANEIDWGLWWEG
KYVLSHGSNLSAGVGVLFSKFLNVDIFKTEEVVAGRVLFVHAQVEGMEFLFINVYSPNVGSERIELFLNIKSQISKYDNN
VCIIMAGDWNCTENVKVDRNGEEPHFQSGYVLSKVIKEHNLIDVWRIRNKGIKQYTWVKVNNTEIKGARLDRFYICKSFN
SRVVNAAIVPSGFSDHHMVTIDINKKITARTQYYWHFNKKLLYNKLFCETLWRLEKNNYETKCQWWEVEKAHIKVLCQSY
ESQISFKVRDAVKKLQCEIGEIEKIMLDNEEGTDKSEKIHKKKLELKQILQEQVKNALIRSRFCTVKDMDAPSSYFFKLE
RKVVQHNPMLHLSYPNGKITDNPNEMKKIAVDFYSELFSAEQCDEECMMDLFEDLAKLQTKQRENLDSDISLQELTDALQ
QLSLGCSPRIDGITTEFYHHFWNILGQDFYEVAKECFENGLLPSSCRRAVLSLLPKKGDLAFLKNWRPVSLLCDYKILAK
CLANRLKCYLEIIIHGDQTYCVPERSIMDNLFLLRDVIHLSIKKNINMGILALDQEKAFERADHSYLFSVLSCFGEKFIS
WIKLLYHDVSTLVKVGGGLSASIPVRRGIRQGCPLSGQLYSIVIEPLLRRIRKKLNGFSIPNYINCDKIVLSAYADDITV
FIHGEDDVNNLKNIIEXYEKASTAKVNWNKSEAYAVGRWINKRLPDLPGGLKWGREGLKILGVFLGSSNFMEKNWEGLLE
KVVARLSRWKWLLPQMSYKGRVLVINNLVASTLWHRMMVLEPPQELVVSIQKKLVDFFWTGQHWIRAAQLYLPNCEGGQG
LIDIKSKIQAFRLISAXKLLCKSKLSWTHTACAILRTVKGLNYDLHIFWIQTDEMDLTGITSFYKSVLQAWNKTFKIQRI
FDIPKYWVLEKPLFHNPVVHGTLISSRSVQNNMIKRNCTKLKHLVKVDGWKSIEDIMVFTGLRSHRLATRFLEEIHSFLP
GQYRAILQEEDSSEEVKILPLVVSSSCEFGGFEEETGISKTWTVDGMSKEVLYILCVKNVHKDILKGQLLKWTKKFGPNF
PLRDQWRSLYKSPLEKRIGDLQWRLVHGAIATNSHVSHLNPIVRRECAFCGKEENVEHLFLSCTRLKDLFNVLKYWFRGF
GETFSECIFIGGVKYRMSKKILFTLLNYVIGTAKLSIWKTRKNKISGVGGIDPVNMLKGLISNRLKIEFTFYELVRDLIT
FEEKWCLGSILCSVYEEQLVLNL
>L1-N1_CQ_gag#LINE/L1-Tx1 110-1012  [Culex quinquefasciatus]
MSAVRKNTLVVDFSVLPERPKLDMVQRFVEKSLGLNPTDLRSIQLHNIRHCVLIQMADPAAAVEVAVQHHLKHAFRISPT
KKIAIPVYVDDDIVDVRIHDLPPDMSNMQIAEAMLQYGEVLTIRDEVWRDIFAGVPNGVRVLKMKISKPVPSYVTICGLS
SLATHTGQISTCRRCGFQRHVSKSCSEAAKKQQPKPKPQKNPSPSGPVLPIADLAAVQSQVVVPHTHEDNGNDGFITVVK
KGKTKRQLEEKQAPEEKRSCLDDDDDDKSPTLDNDQRNDNGHLIGLPTTTTPKRRVWKQTV
>L1-4_SMo_gag#LINE/L1-Tx1 796-3879  [Selaginella moellendorffii]
MNRQNVVLPRTSELQKTSRQGAHRYGLRLVVPPPDRFSPGREHPSPRIHDLPDRKFLPAQTKPMQEMAKSQARSGSSEKR
SNGPEQTATNTKKPRTRMTVHVPSRSASQPLDREKQTPTKGSAALPTHKSQPRLRSTETRSHGPEQKGKTTKEKKNDVTI
PHVSPGNIPPPTSPSPRQSSRGQSSNQHNVRRENRQDRVTSPKSKANLRRSTSNHTRPRTPPPRAVATTLNLPLPGKVES
SSRATGERKKASRAKRKGEEHHANNQEVGSPSNPLAPRFVSAPPSRSHVDFSPLSSPRLDPPHASPHTPPSSTQKTASST
SAESPHHPRGVALIRELFTEHRTGTKKEMPRTKNMRKRGPPLEDELEEPPRTDTTQNTPDDEERPTAEPRPETRSTGTKL
SIKLKQRPPPPPKDNEAVEPEPEPTRAAPSSSADTVKITKKKNQTATGGKKSKGASDASSSKQTITPPLNTTPPARTPTF
ERIPSISALEGIGKYADETLENTPQQTSPDSHSASPGLSALFMDTQQRERVIQAATEERQGKEGDSEGDQIEETTPALTK
VPETPAPRASTGTTKEKAIPAVPLKKRKESDVLYLGWTRVEELDMDVKKTVSPHSAAAPAMSDVTAPVPGELQVEANEVL
MELQERQAKAAKNLILAIFEGNKPDRQAALEGLEDGFKEAGVSFRGRPVTFLGRNCYSVEVSTEKNRRALVLKQRVTRPT
HELFFYKFPPGFSPSQKDLVHRPTMELDLLVEDLCETDNTPVFLAMMVEGFAQYLGKRATREESGDQLIHVLYTGKAPIP
NKIRIMGKVHPIHIQESRTTPPAAATPSKPMQDRGKRRRSPSAQGGTSRRQSDRVSMRREETPTDGQASPERTRDQRGGQ
HTVQRSPSPERARVERSPSEDQVPRGRASSSRRFTRLKVNLWLHVSNTRPRKYLALWSGPPVGYVTPTFHMARDQLPENG
VHSFLEASEVIKDLRYHVEVDKATIVGTNMELHAALLTKSGVIPARGGRDREFSWVERDRITTNKDND
>TREP20_pol#LINE/L1 1-4066 via tfasty with 31433057_Osa, 7 frameshifts and 2 stopcodons.  [Hordeum vulgare]
RNCRGLGLDPTVGEFRDLVWSYNPAVVFLSETKKKSRAMERIKWSLGFTNGIAVDCAGKSGGLALWWRDHVQVSCRPWSQ
YFIDAEICVNGKTFRFAGFYGEPKTELRExSWDALRYVRAQDSLPWLCACDFNEILTQEEQWGGNPRPFSQMENFRDCMS
DCGLGHTGYTFTWDNKRTDKDNIQVKLDRATCNSEFMSMYPTSMVENLITEESDHMTIFIRVMETAPGTRMRITRTFQFE
EMxTKHEGYDTMVDDAWKQVGQCVGTGDLCSKLNHLSRSMHAWGRSVFGSIRRQIDLLKDQLRDAKERALTTGCTQEVRD
IESQLKKFFEREEVMYKQRSRWLKEGDQNTQYFQNRALHRKRKNTVRAFHGENGVRCTVDEGTQEMAAGFYEHLFNFEGT
DHTDLILDLFQEVVSPAMNKKLTAVVTDLETETALFSMGPTKASGPDGLPAMVYQQHWLLVKEDVCKAVRDFFAGSATPE
SFNDTIIVMTPKVNSSESLSEFHHINLCNVLYKIATKVLANRLKLILPVLISEEQSAFVPGRLITDNVLVAYECVHAIRK
RKRKKPLCAVKLDMMKAYDIVGWVFLEQTLERFGFEQAWISMIMRCVRSVRFCVKLNGFFSRSFLTSRGLRQGDPLSPYL
FMFCVEGFSALLQRAQRDNHINGVSFGSTGPHITHLLFADDSVVFLEGSEGNLQALKDTLQAYQVASAQKVNLQKSSILD
GKGCRDEDKGTLKQTIGIDSEALSERYSGLPTVVGRLKDGSFEYVRERSKGKVSGSKGQGLSKKAREVLIKYGLQSTPTF
TMSCFQLSKKICGNMTSIPSKFWWGASQGERKVHWIAWDRMCLPKRDGGMGFRNYEAFNQALLAKQAWRLQFPSSLCARV
LKARYFKECTIMNTTCPNGASYTFRSIIHGRELLREGVVWRVGDGSDINIHHENWIPRAGSLKPLGQVFVHGITHVSDLL
SPDGTAWDHDKVETMFTPDDAYDIKQIIIGGPGSSDHLAWNFTKSGQFSVRSAYHLCMMLKRTKFGRTESSSSVHKHQSW
LALWNTNAPGKAKIHMWCLIKNGLVVDAESHRRKIKPGIFCTVCGGEETVLHCFWACPHSAMFWKVLSSEKWVPVAIPPV
SEGPHGELASWLLRWFAEVGDPERELMVHAVYGLWLARNEARDGKRIVDPRVVEENVYQHIIEWNAIHMKKPRSTTPTLA
VRWSPPEQGWLKANSDGALAKLRDRGGGGVVLRDHDGAYRGGACYVFRDVSDPEVVEILACRKAVHLAVQTGATRVHVEV
DSKGMAAMLNDQAKNLSAAGPIVEEIKLLGRTLQGFIVSRVRRSGNHGAHLLAREGVSTELCRV
>SHALINE10_MT_gag#LINE/L1 1-894  [Medicago truncatula]
MEGRKLKRSTDEEDEAIPVEADEMCNDDESFSRTLVGKLWTENPYNTRAFKQTMLQAWRSRNPVEIQDLNKNLFLFKFSS
KKEADLVCKNGPWSFDRNLLILNRISGNEQPSELAMNTASFWVRVYDLPLKLRSEAMAKKLGNILGKFDEVDMKEVNRMG
KFLRIKASMDLTKPLKRGSMLHFQGKDIWVFFKYESLPNFCFICGRIGHQMRDCEDMAGHDQEGYSEIEEKEQAFGPWLR
ASPLPKITYELNKESSSSACSKNLFPSHSNNKGQNSGTETEKEDEVEQQESQTHHNGA
>L1-1_CQ_pol#LINE/L1-Tx1 1635-4838  [Culex quinquefasciatus]
MSNNPLSYNIASININAISNENKLQALHTFLRLQDLDIVLLQEVENPNMCIPGFIVITNVDSARRGTAVALKSHIPYSNV
QRSLDSRIITVKLGSSVTICNVYAPSGTQNQSAREFLFRHSLPFYLQNSAPNLVVGGDFNCVISTKDATGCNNFSNSLKR
FIDSQNLVDSWEHLNRNAVAFSFVRPNSASRLDRIYLSHSLAPHLRSTDFFATCFSDHKAFKVRCCLPDLVGNGHGRGYW
SIRSHVLTEENLAEFEEKWTRWLRERRNYTSWLGWWIECAKPKIRSFFRWKTNQAFREFHATNELLYARLRRAYDELLLN
PGSTAEVNKIKGEMLLLQNRFSKAFERINDKFVAGEKISSFQLADRNTRKKKSAIDSIRHRNRLLTDPAEVQNHILDYYK
TLYSLENAAPNTNFPTNRAIPPGSDSNERMMEEITTEEIYFAIKSSASRKSPGSDGVPKEFYLRAFDIIHRQLNLILNEA
LCGNIPSNFVEGVVVLAKKKTDEDTIKAYRPISLLNFDYKLLARILKQRLEKVMEENHILNAAQKCSNQHRNIFEALNAV
KDRVAEFNCRKRSGRLISFDLDHAFDRVSRSFLLVVMRSMNFHPGFVSLLDKIMSMSSSRLLINGNLSSPFPIQRSVRQG
DPLSMHLFVLYLHPLLEKILQICDNPHELVVAYADDISVIVADDNKLDQIKQAFADFGLCSGAVLNTNKTVSINIGRQQS
GRRTPSWLNVSDSVKILGISFFNSLKQTINFNWGEVIRKTSQLMWIFRPRVLTVFQKVILVNTYITSKLWFMASILSIPN
AAVARMTSQIGSFIWERYPTRVAMEQLGLPIDQGGLNLHLPMQKCKALLINRFVHCQTNMPFAESFGSQLKNPPNPAGVP
ALYPCLKMLARELAYLPPRLAENPSTTSLLSFYREKANTPKIIEENQAISWKRVWRNIRCRELTSAEKSSYYLLINQKIP
HAALLFRQNRVSSNFCEMCPLXVEDLEHKFSQCVRTVHLWDFLKSKLESILNRRVTFKTLVLPEMKNVSPAAKNKALKMF
ITYVNYVLEATSSLTVGALEFVLQCNCL
>L1-3_CQ_pol#LINE/L1-Tx1 1263-4457  [Culex quinquefasciatus]
MDYQSFNIGTLNINTISNQNKINALHNFTRTHDLDILFLQEVYSDELIIPGYTVICNVDHNRRGTAVALKHHIKYTNVEK
SVDSRVIALRLQGSVTLVNVYAPSGSQQRTHRETFFNTTLAHFLRHQTNYTILAGDFNSVINARDATGEGNHSLALKNTV
QQTRLKDVWEALHGTRVEHTYITHNSASRIDRVYVSSNLRDQLRTAYVSACSFTNHMSLTTRLCLPNQGRAHGMGFWSLR
PYVLTDETIEEFQQKWNYWTRQRRSYNSWMQWWLRLAKPKMKSFFRWKSKEAFDDFTRKQQHLYAQLHQAYRAYLHNPDM
LTSINRIKSQLLLLQKQFTQLFVRINDTHVAGEPLSTFQLGERTRKRTIIESMENDAGASLESSDEIQEHVVNYYRNLYA
EGETRANPEFDCARVVPPDSISNHACMEEITTAEIYEAIKFSSSKKSPGSDGLPKEFYVRTFDIIHRELNLLLNEALRGD
IPEEFVNGVIVLVKKKQAGNSITAYRPISLLNYDYKLLARILKARVDRVLREHDIISPVQKCSNGDRNIYQATLSLKDRI
AQLRSQRLSGKLVSFDLSSAFDRVDRGFLYHTMNSLGLNPDLVNLLERIGERSTSRILINGHLSAAFPIQRSVRQGDPLA
MHLFAIYLHPLVARMERICDGPHDLVVAYADDISMITTNADKAEQVRGLFRDFEGCSGAMLNLRKTTAIDVGHINDRNRL
ALPWIQSSESVKVLGVIYLNSLRQMINKNWDTLITKMGQLIWLHRMRSLTLHQKVTLLNVFITSKMWYLSSVLAPYKVHI
AKITSIMGSYLWHGHQARVPMHQLALPIEGGGLKLHLPYFKCRALLTNRHLQESNSTPFYKTFMQRIQNPPDLHRIPTDC
PCLKVVCQEIAYLPEQLINNATATGVHTNLLQQVATPKVMSSDPTLDWKLIWRNINSKKLKSAERSWYFLLVNKKTTHGE
LLHRMNIVNTPNCAHCGAQREDLQHKFSTCSRVAGAWRTLQRHLAAAGMNGTTSFNSLAQPELRRLRRDVKHKVMKLFIN
YINFINQCNNQIDVDSLNFHLENEI
>L1-2_SMo_pol#LINE/L1-Tx1 3584-8083  [Selaginella moellendorffii]
MTTLTLVTWNCRGLSWTGSRLNKRAQLKSHIREISLEGDIDILCLQEHKMTVAPDYTFGMRGRLWWNPATQAVARPGGGT
AVVVSTKWSAQVRNHLVLVPGKAQLLVLHLHFGRVGIINVYAPTKKGRRAEFWLSVLQSAQGQADEWLVLGDFNMVEDVC
DRRGMQETIQPREQKQWSQLMDILGLMDLQHAAGFAPHAHPFTRRQTVSSQSRLDRIYASSRIRQDGGSLKTWLGFASFS
DHDPLRCVIQLQRDKGTAVQRSITRATLRDPVAIGLIHDALAQNKLGLIPVLLSCSQKLRARQKDLKGAVMKDLRLARKK
VAAAHRMLLNTQDEFKWQTILDEREAELRDMEYAAWSKGVRAMEDGWALNERLLNKAFFRGIRPVTDSPPILGLKHSDGR
VVEDQQGMQQLAQEFYQLLYTAQQWTPERERAAVEVLASLPQRVPHEWHDSLKTDFTLEELREALGKLSNDKQPGIDGLL
PIFFEEHWETIGPLLLQAWWDAQRDGTLPREILEGQIALIPKRGDLQELKNWRPITMLNTSYKVYAKAMTLKLQAVMPLI
IREQQTGFVPGRQIAENIWTYLLAQRWAEISNQQTAAWLLDFEKAYDRVDWRFLEECMNTIGIPREMVARISLLYRGAAS
RVTINGETGPSFQLGRSVRQGCPLAPYLFLIVAEALGTFLAEGGRIKGLTLPAARQQLPGTTRVSRELLDGAFADDTALF
LLATKENMDAAKKALETFNLAAGAAINWNKSVGINWGRPGIESWGQDIGFQWLKPGEDARYLGIQVGTRFSAALQDDTLL
RRVRTSIQKWAPRKLGLPARVVVARSIILPGIWYHLSIWPVPERTLRKVRTMVRQYLWRGALVTGRSMAKVAWQSTARPR
VLGGLGVIDPSDMAKALRYKILLMGLQPGNQPWRLMFRQNLLAIRPKHNTARPWEEDPRWLFAEGPKQVVKGGTLVQGFL
RLWSAFPVSRELPGRAEDWLNQPLFFNDLFKLDDRTLGREDHYTIWRKLHSAGFRTLKQLVRVLDKDRRKTTRHMQVFNP
GRWRKVHLDLLRIIRAVSEAKQGQLWPRRCLKSGDFVALQRDVEPDRERVSLGAWTRAFTAPTPAWEDRDVEVWFVVSPD
QNVGRPFRVLRGDMLLPAGDEQVMPMVTDDEVKGRIRVIRQAPKQSVVVQSLAALEGEGILRWWRQQLIEDLDWDPAAWK
RGARSFFSFGVKEARDGLLTSREEARGEIPKLWKKWIEQGVEANQVVGNTLAFWKLPVQEKVKATSWLVANNGLPVGQRF
QEEACRRCKECGELETARHVLWECDVAREVWRQIFKATQELGDIPEFEARSGDILHWFEGARGPAIGPAWRRIRCYGRHR
WNMRVRWDVTGAEVGMSIWEALGQERWSIWRATGLQALWEARNHCRFDGQQARISAVVASWWRLTLAAVRLHYTILKERA
KPRQLEEWRSRWLPCFGKLGGGEIRWQWRPPDSVLRSARGGDLDIDMIRSRRPRPLLLQD
>L1_AC_13_gag#LINE/L1 1492-2574  [Anolis carolinensis]
MAYRLRSERHTKEPKTMQKRASFSEEPQVKEMTEMILKELYRMQEKQDAYQKLAQDQMAEFKKEIKSELKGMKQEIGSLS
QELKELKNDKEELRNSHGKLQREVQILEQKYNKIEAKQELLEAKDLEYQLRLRNVWEEPRENIRMVVTEILANLLQSTKE
EIEDRVDRIYRINTNYAKRNKTSRDVIVNFTKKIYRDEILKLSNENTISFKEKRVIILKEFPMDTINRRRKYLFLVDELK
RYNLRFRWEKEGLMTTYRGEKHWITSEGKAQNFYKKIKKEMEEEEERDHAERMRKKKSRRKKYTTPQGREEVDREQQPRE
EQLIEDNKTEEEGGSEEEAEESSINPSEEEGDPEDKEEDQA
>L1_AC_2_pol#LINE/L1 2171-5903 via tfasty with L1-23_ACar_pol, 3 frameshifts and 1 stopcodon. [Anolis carolinensis]
MSKVGCQLKCFSNNVNGLNSPIKRNRLFNKLRKEKYNIIAIQETHIDLKHVKLLNKDYLGQSFIAADSVKKRGVALYVDN
KFPEKETFNDNEGRVIAITIDFEKEKILICNIYAPNGPKTKFTKTLRENINNTEFDHMILLGDFNGVLDIKLDKTNKSKR
AKETTSLPKNLLALKEEYDLIDSWRELHPKEKDYTHFSNRHQVWSRIDMIWTSKSLLTTISDIDILTRDISDHCPLIMVL
NKKNFLKKWRLNENLIKHKQGINKIKAMTKEYFSINDNGETNPQTVWDAYKAVARGFLIQLNASKRKQKNLEWNRLIKEI
EAKEKELKTNPKNQKLKRSLELLVKMKEKWDLEDVAKQIKWVKQYAFENANKPGKWLARLIRKKKQNRQIIKIKTEGKIV
NSDNEIRKAFQIFYENLYSKDNINPEAITEYLGKQKLDKITDEQRLELNREITEEDILKAIKSLDSNKTPGPDGFIASFY
KLGQAEMISFFKKLMNQALQEKNIPESWKEATIIMIPKEGADLSEVKNYRPISLLNTDYKIFTKILGNRLKEFLPGWIGE
DQTGFLPARSIKDNVRIILDAMEYYEQHNQIEVGFLSVDAEKAFDNLNWTFFKFLFQELDMGIQIQNGMNSIYENQWAKI
QINGQETSKIGISKGTRQGCPLSPLLFIMALEILLKAIRNDMNLKGIRIDKQDYKYRAFADDVICIIENPIQNIHNRILK
FEEFGQVAGLKINxKKTMILTKNMSKKKQKELQDISGLKEPSKIKYLGIWISAKNNQLLDLNYNRIWKEIKSDLENWKNL
KVSLLGRIAIIKMNTLPKLLYLFQNIPIIRSSKLLKDWQKEVMRFIWKSKKARIKYSTMTSRKTQGGFSVPDLKLYHDAC
ALCWLKDWAKLEKIKILNLEGHELRKGWHRYLWYDKRKIEKQFGNHFIRSALLRIWENYKYRFHTKTPLWLSPIEADHRR
SLGWRKWPTYRDLLVAEMTTPPPPQLKELTTIQATNKNVSWYQYFQIKEAYRRDKLVGFEQEQGFWDKFILIDNRILSWE
IETETVTNAMILWARNIERPIQMHEWEAIWNKKIKYTYSADLKENWLKLIHRWYLTPKKVSLMYKNTNNKCWKCKTQVGS
YFHMWWKCRKLEKFWTVILEESNVILKTKFVKKPELLLLGLYDSRDKIDPNTDKLFTFFITAARLVIARLWKTTQSPTKE
LWLDKLLEIKNMDQLSFLIKKTNGQILTATDWTNFEDYLKNKTQ
>L1_AC_17_gag#LINE/L1 217-1269  [Anolis carolinensis]
MADRKEKEGEEEKLNKIITTLEHLKLNMEILRQGNEQTREQITQINSKLGLIENKVEECQEKFKEAAAEIRRQKGELITL
RDINRKLLDKVADLEDRSRRANLRLRAAGESLQIKENLKGVIAEWLATNAQVPSQGIERIHWAFRGGRKPKDILIRFTRE
AERDIVYRKLRKMKNLTLAGSKVWPLLDLSSETLGKRAEMREITGTLERKGQRYTWAFPATLIVYKDNKLYKASDLESGR
KMLKQLKLDTDGKETDGLEEESDKTKDKPTGQEASRELETAERGGPTETDLLQSLFAMGDPKDREEKRTLRNLKDLDLEQ
IKSIEKQLRDLKKQKIREENRRIETRSSTET
>L1_Canid_pol#LINE/L1 L1_Canid_5end_2345-6169 via tfasty with L1MA6_pol, 2 frameshifts and 2 stopcodons.  [Canidae]
MALNSYLSIITLNVNGLNAPIKRHRVSEWIKKKQDPSICCLQETHFRPKDTSRLKVRGWRTIYHANGHQKKAGVAILISD
KLDFKPKTVIRDEEGHYIIIKGSIQQEDLTIVNIYAPNLGAAKYINQLITXLKKLIDNNTIIVGDFNTPLTAMDRSSKQK
INKETRALNDTLDQMDLTDIFRAFHPKAAEYTFFSSAHGTFSRIDHILGHKSGLNRYKKIEIIPCIFSDHNAMKLEVNHK
KKFGRTTNTWRLKNILLKNEWVNQEIKEEFXKYMEANENENTTVQNLWDAAKAVLRGKYIAIQAFLKKQEKSQIHNLTLH
LKELEKEQQIKPKSSRRREIIKIRAEINDIEIKKKTVEQINETRSWFFERINKIDKPLARLIKKKRERTQINKIMNERGE
ITTNTEEIRIIREYYEQLYANKLGNLEEMDXFLETYKLPKLKQEEIENLNRPITSKEIESVIKNLPTNKSPGPDGFPGEF
YQTFKEELIPILLKLFQKIEMEGKLPNSFYEASITLIPKPDKDPTKKENYRPISLMNMDAKILTKILANXIQQYIKRIIH
HDQVGFIPGLQGWFNIHKSINVIHHINKRKDKNHMILSIDAEKAFDKIQHPFLIKTLHNVGIEGTYLNIIKAIYERPTAN
IILNGEKLRAFPLRSGTXQGCPLSPLLFNIVLEVLASAIRQQKEIKGIQIGKEEVKLSLFADDMILYVENPKDSTKKLLE
LIQEFSKVAGYKINAQKXVAFLYTNNEAAEKEIKESIPFTIAPKTIRYLGINLTKEVKDLYSENYRTLMKEIEEDTKKWK
NIPCSWIGRTNIVKMSMLPKAIYTFNAIPIKIPPAFFTELEQTILKFVWNQKRPRIAKXMLKKKTKAGGITIPDFKLYYK
AVIIKTVWYWHKNRHIDQWNRIENPEMDPQLYGQLIFDKAGKNIQWKKDSLFNKWCWENWTATCRRMKLDHFLTPYTKIN
SKWMKDLNVRQESIKILEENTGSNLFDLGHSNFLLDTSPKARETKAKMNYWDFIKIKSFCTAKETVNKTKRQPTEWEKIF
ANDISDKGLVSKIYKELIKLNTQKTKNPVKKWAEDMNRHFSKEDIQMANRHMKKCSTSLGIREIQIKTTMRYHLTXVRMA
KINNSGNNRCWRGCGERGTLLHCWWECKLVQPLWKTVWRFLKKLKIELPYDPAIALLGIYPKDTNIVIRRGTCTPMFIAA
MSTIAKLWKEPRCPSTDEWIKKMWYIYTMEYYSAIKKNEILPFAMTWMELEGIMLSEISQSEKDKYHMISLICGI
>L1_AC_18_pol#LINE/L1 1633-5352  [Anolis carolinensis]
MGDLTILALNINGMADLKIYRMLKLAKECRINVIMLSETHKKRGRDKLIKDKTWNRIYESRGTGNSRGVAILINENVPFQ
ELDVQRDREGRTVFVKGKINQVKITLAVIYAPNRNTKQYILNTKKKLDNYAEGTLIWAGDFNLDLTKKNKKAINVNKLNM
VDAHANQSIRDTFYSARHNKFSCIDYILLNKASKAQIKKVERKPIFLSDHSPLIATLGLSNEISQRIWRYNSVVTEKDEY
KLKLQEEIKEYYRINDNGELSKTVVWDSFKSVLRGQCFSIESYIRKSWREKREKCIKEIESIQEQLRITRRRNINSILRQ
KKKELELMDEVQWNKMRQSVRQRINGWGTKSMKQMVRYLKRRKEKSCITKLKDKNGLVKDGRKELEEIMRDFYRELYQKE
QVNNEEIKIGNKVNEEDKIMLNDEITQEEVIQVIKGLKQYKAPGIDGYTAEFYKTFMHELVPYMAEMFNEVYMRGIVPET
WKLSEIIPVLKPDRQPELPESYRPISLVNQDYKIFMKIIANRLEIILPKIIGEDQYGFVKGRSISEPIRNVVNAICHATK
TKRKLSILKLDVYKAFDKVNHEYLYRLCKELNLGNNFCEMIKNVYRENTACIRVNGQRTENIQIENGTKQGCPLSPMLFA
LVIEPLAYKIRMDETWEGYKIGRKEELRLNLYADDAIILTQRPREMIKSMKIILREFKKVSGLSVNMEKSEILFINTPPK
EQLEIRKESGLKLGIKKMKYLGIWIFKTLDKIIDGNYRMAWKRMLKQMSRWKNKNLRQMSRIRALKILIIPKMMYLFQAL
PGIPPMAKLKEWDRKLNYWVEGGKRPRVRKKLIIAKEMKGGWGCPCLELYSDAFQIERAIELQVTNKKWVRFEKEMNGVN
CEEIIFRKWDKRNIDKLIGPMKGTMQVWKKWQGRISSLKSKMSTVWIINKDKESNMNRNIQTLKEKGIERLEQLYDREGT
VRENKIKQWLGEENWLQIRAICAYCKIKENINMVKREDNAFEKIIREKGEGKKAQASKIYTMLIEADGCIIRDLKSMWET
ELQITEQEMRNVVETIGMKRNTRVREMRRKILHKWYRTPCQLAYYYKKGSSQCWHGCHQKGRFMHMMWECEHVQYFWQTI
QNESNQILGNEWVITKEIAVLGKREEMGNKREIKEAIIECAQAVIVLGWKDKSKWTVNKWYQYMVEQMEFEIMNVKLNVV
KTNENRTREMEERWTMVKNYIMNQSGDQAIRNKIQMLYSI
>L1_AC_2_gag#LINE/L1 1117-2175  [Anolis carolinensis]
MATPKWKVEKDNKDSRMNVRRSSLPEKGGLKDILREIKKISEKQDLLQNEVQMIAKKQDLQYKTFQEEMADLKKEWREEI
GTMKKEIIKNSNDISDLKLTNRKNDKAQSKMQEKIESMEEKGKKREKAQERLELQTLEFQLRYRNVQEEEKENIGWVITQ
ITAQLLQCTDQEACGQIDRVYRVQSNFTKKNKAIKDVIVHFLKKTTRDEVLRRNARNPIWYKERKVIILKEFPKSILNRR
RKYYFLTDELKRRQIKYRWEKYEGLMATYKDEKIWITSEEEAKDFFRMLKKDVNINRLSSSSSNGKNPKETKKRRFDSPK
ENDPTVAEIDLNTDQEDSDVGEPTEDDGIHKDE
>L1-66_XT_pol#LINE/L1 2-2621 via tfasty with L1-1_DR_pol, 1 frameshift. [Xenopus (silurana) tropicalis]
ITAIKDKNQIIHQSTKQIAASFQEFYQKLYRIKTGTNSRSEIDKVKQFISSAHLPQLSKAQASKLEEPFTTLEINKIITE
LPNNKSPGPDGFSATYYKQFQSDLVNYLTTYFNSINLDQTFPNQAKEAHITIIAKPNKDPLLCASYRPISLINIDLKIYA
KLLANRIKTIIPELIHPDQSGFVPFREGKDNTSRLISLIHHAQKAKIPSMLLTTDAEKAFDRVSWDFLKYTLLGFGLGEQ
TTGKILALYSNPTARIRINGTLSPVIHICNGTRQGCPLSPVLFILVMETLLSHIRLNKDITGIRLGHQEHKAIAFADDLL
LFITKPHIALPNIMNLLDKFGVVSNFKINASKSEALSINLPPQEQKRIAGNFPFQWAKTSIKHLGANIAKDLTSLYSYNF
IPLLTEIENTLKKWENNNKLSWFGRIQVIKMIITPKILYLLQLLPIKIPKSFFCKVKAIISRFIWNNKKPRQKYSKLILH
KDSGGLSVPDIYMYYVSTHLQRILSWKTGIEKRKIWLELEQLLCKVPLYNLIWALPSNIPQELHHHPLIGATLKIWLEIR
DEWGISPHPSPNTPLLNNLDFPPSLEKRTFDHWAETNNRTTVLADLLSAKGLLPLETIQKSRHTRPRDIWCYRQLHHYCT
SSNLSKAIREVTWWEQMMYLSGRIKKPLSTIYKGLIKNSLCRDETLEYKWETKLGININSKIWLQIYRSMHKSSISSKTQ
ESKFKLISQWYYTPIRLNKMFSNVSKLCWRCLNQNGTYKHIWFDCPKIKTFWANVMEIIQRTVPLHPKVNLAALIVLHYD
STTNQVVTNQLLLFMVQAAKSLIPKKWLQKSPPTISEWFSTMEEIKKFEEIKAMRHGTFSNLRKTWAPWYKNN
>L1-58_XT_gag#LINE/L1 133-1122  [Xenopus (silurana) tropicalis]
MPGRGNKRQSQPDLTPFLAKPKQLVAKIQDGAAPLEQTTPDSNSETEETEMVNSTPVTVSVMKQLLGDFKSSLNADINEA
IQLLRSNVLNIGQRVNSLEQTTEEIRATQNQYSDCLESFNKQLLTIKDKMADIEDRTRRNNIRIRGIPEQVTQEELPLYF
RTLLATIMPQLTGTDLMTDRIHRIPKPKNLPVETPRDIIARVHFYTTKELLLNHFRNKTQLPPQYQNLQVYADLSAHTLI
RRKEYMVATNILRNQGIPYKWGFPVRLIILRNGSQHSFFRPKEAIATLSEWGLSDLQMDTSTPKIPKKRPLDWSTVSPRK
DKQQQRPAHV
>L1-97_Cis_pol#LINE/L1 1246-5004  [Ciona savignyi]
MSVNFASFNVAGLGNSIKRKTVFNFIRKKGFSIVLLQETHSTLESEKLWEMEWGSKIIWAHGTSRSKGVAILFDKKTSYS
VTDYIADTSGRYLITEMILDSLKLTLVNLYAPNNDDPDFFEGLFQTVEGLSSNSDLIIGGDFNLILNPNLDRHQRSVDRN
TKSKEKITAYMDTLGLEDIFRIKNPNTRKFTRFQLNPYSASRIDFFLTSRRLAPKVNECDIVPSVKSDHDVVTITLRQFS
NNPGKGTWKLNVSLLDDASCISKIKAAIKDFAQTNPPGHVNAHVRWDTLKCVLRGEFIKICSYKRKIAQKRQTSLEKEIS
KTELDISQLKNPSQQLRERIKSLRKELDDLVENRSRGATIRSRARWAENGEKCTKYFLNLEKRNANKKAIFRLKTENSTI
LTHQKDIIGELGMFYESLYDDTSSTIERQNITNYLDKLTLPQLDTDESNSIDHPITEQECYNALKTMPNNKSPGSDGFPA
EFYKTFWPDVKTFIIDALRYTERELTLSDTQKQGIITLIPKGDKDPLLATNYRPITLLNVDYKILSKVINSRIKHYLSTL
IHPDQNGFIKGRYIGENIRLLFNAMDYCEEENIPAAIISVDFYKAFDTLDWMFVEECLKKWGFGEYIQKWINIFYQNPKC
AVTNNGHLSQYFDIKRGVRQGDPLSPTLFVLAIETLASELRNADFNGIKILNSQIKVSLLADDTVIFTDGEYQSFKTVFQ
ILNNFGKLSGCVLNLQKSLAFYAGSKKGCTHKPYSGDGLKWPANQIKYLGVEIPFTGNAQRILDLNLASPLKKIEALLKI
WSGRTLTLIGKITIVKALLIPLLTYKVSVLPVLLPKSLISSLNSMLFKFVWGSKWERIKRSTLYSPVSNGGAAMIDLEAY
ILALQAKWCNRLLDDEYHAPWKKIEKLYFGQATLAAFVHSNLRDTSVDFKRLFPIRSLCNTILNIRRLYTRGVLGPKIEX
PHYLWLNPKVKTKARTFFIEEFVQSGIFSYSQLINNSNAYRSYGDLVNVFSMRENMVDYKQYNKLIRSIPETWDQAELSN
SNTIKWPNISADLRTQLLEFKTTNTFYYRIISATHDGAIKQQQKWSSFLGLSINWEKAYTNIYKCTLETKLRSFQIKLHN
HGIVTNSLLVKLGIKDSSLCTFCKSEPETLPHVFYFCSAVMSFWTEVENWICVKLRKPLSLSPQNCFFGVDNHDLLNCML
LCARFYIYKCRITEDKPLLNLFIRDIEYVRISEFIIAKKNNKTNLHFKKWSSI
>L1_AC_1_pol#LINE/L1 2394-6161  [Anolis carolinensis]
MSKVCYQLKCFSNNLNGLNSPNKRNRLFNKLKKEKYNIIAIQETHIALKHISLLKKGYLGQSFIAADKVKKRGVVLYIDD
KFPAKEVFKDNEGRVIAVTIDFENEKILICNIYAPNGPKTKFIKTLREKINNTEFDHMILLGDFNGVLDVKLDKTNSSKK
VRETTSLPKNLIVLKEEYDLIDPWRELNPTSKDYTHFSNRHQAWSRIDMIWTSKSLMTTISDIQIRARDISDHCPLTMVI
NKKHCLKKWRLNENLLKHKQDVNKINAMIVEYFSINDNGETNPQIVWDAFKAVARGFFIQLNSSKRKHKDLEWNRLNKEI
EAKEKELKINPKNQKIKRNLALLAKMKERWDLEEVAKKIKWVKQYAFENANKPGKWLARLIRKKKQNRQIMKIKFEERMV
NSDKEIREAFQKFYVNLYSKDNINPEAITEYLGKQKLDKITDEQRLDLNKEITEEEILKAIKSLDSNKTPGPDGFIAGFY
KLGQPEMIKFLKKLMNQALQDKVIPETWKEATIIMIPKEDADLSETKNYRPISLLNTDYKIFTKILANRLKKFLNGWIGE
DQTGFLPSRTIKDNVRVILDAMEFYEQHNQREVGFLSVDAEKAFDNLNWNFFKLLFQELDLGTQIQNGINSIYEDQWAKI
QINGQETDKIVISKGTRQGCPLSPLIFIMALEILLKAIKKDINLQGIKIDNQDYKYRAFADDVICIIENPIQNIHKWIAK
IDEFGKVAGLKINKKKTMMLTKNMSKRKQKELQDIAGLETPLKLKYLGIWISAKNNQLLDLNYIRIWKEIKNDLEKWKNI
NVSLLGRIAIIKMNILPKLLYLFQNIPIIRSTKLFKDWQKEIMRFIWKNKRARINYNIMISRKTQGGLGVPDLKLYHDAC
ALCWIRDWAKLEKVRILNLEGHELRKGWHGYMWYKKAKIEKQFGNHFIRSALLRVWDNYKSRFHTKTPLWLSPIEADHRR
LLGWRKWPTYRELLTVANDKRIPPKLKELTKIQELNKNVSWYQYFQIKEAYKGDSLVGFEQEPGFWDKFISIDKKCITVM
YNNLLSWDTESSRVTKAMTTWAKNIERPIQMQEWESIWNKKMKYTYSVDLKENWLKLIHRWYLTPKKIGLMYKNANNKCW
RCKTQTGSYFHMWWKCKKLGKFWTAILEESNVILKTKFIKKPELLLLGLYNCDDKIDPNTDKLFTFFITAARLVIARLWK
STQIPTKELWLDKLLEIKNMDQLSFLIKKTNGTILKATDWTSFEDYLKNIVHITKD
>L1-98_Cis_pol#LINE/L1 1250-5006 via tfasty with L1-99_Cis_pol, 1 frameshift. [Ciona savignyi]
MALSIASYNVAGLRNNKKRNPIFNFLKLKKYAIIFLQETHGSSDVEKLWELEWKGEIVWAHGTTKSRGVAVLFDKQLSYQ
ITSCNADPLGRYLIIDLKLNELALSVVNLYGPNQDNPAFFTNVFKIINDMQYPRDTVIGGDFNLTLDPKLDRNVQKNTNK
NATEVVALNMRALGLVDAFRTANGNVKSFSRIQTNPYAASRIDFFLISQTLTSKLRKASIVPSIKSDHSIVTIDLSLTPT
SRGRGYWKLNVSVLSNHRYIQTIKEAVNDFCRNNPPLLVNPNLRWDALKCHIRGVTIKFCTEQRRKHEAVQKQLETAIQT
IELKIASEGNSPKPELLENLNVHKNELTAHVDKRTAGAIIRSRTRWVESGEKCTKYFLNLEKIHGAKGAISRLKTDDAIL
TNQADILHEITAFYTTLYKEDLTCKPPDATATHLASLNVPRLSDDQAGTLESEITEEECLAAINSMSNNRSPGNDGFSIE
FYKVMWPSLRRVFMDSIRYTESQGSLSGTQAQGIITLILKKEKDPCHVTNYRPITLLNADYKIIAKVINNRLKTFLDILI
CKDQNGFMNGRYIGNNLRLMFNMIDYCDTENLPGTIISVDMFKAFDTLSWSFLIEVLKAYGFGDRIIQWVTTIYANPSCS
VINNGHFSKYFPIRRGVRQGDPLSPTLFILAIEIMAIKLRSSPFRGIKCGEKEIKLSLLADDATIYTKGDQCDFAQIFKI
IDEFGKMAGTKVNIAKSNAFYVGTKRDCLCKPMLSEGLTWPADHVRYLGILIPINTSNKRMSELNLSPLLNRISTRLNMW
SGRSLTLLGKITVIKSLILPMLTYKISMLPSPPPIQFLTKLKTKLFRFIWKSKWERINRTKMCSGIEDGGPNMVNLDAYI
LSLNLRWINQLVDEEYSAPWKYIESIYANKNILSTVLQSDIRDSSAELKRLYPIRALHKTVIALRQLFKKKELSTSYQAD
PRALWLNTNVKTKKRVCLIERFAAHGVLSYHHLLDDSNRYRSYNEITNDYEIPTYSLDYYQYNELIRAIPNSWDVGDPQS
PTKTDYHECVMDFVSSLKTQTTQALYKAINGVVCERTTKQQQKWEAILATHIDWNNVHLRNYFCTVETRLRSFQIKLNNH
AIVTNDKLFEFGIVDSSQCGFCNNSTENLIHLFCECPVTKLFWNDVVDWISSKLRIPFLCRKEHFLFGIENNPLICCLLL
CARFCIYRSRVSNCLPKIAAFVKECMKIQTAEFEIAKKKNKITQHAIKWGSI
>L1_Canis1_gag#LINE/L1 1171-2067 [Canis]
MTRRKTSPQKKESETVLSPTELQNLDYNSMSESQFRSTIIQLLVALEKSIKDSRDFMTAEFRANQAEIKNQLNEMQSKLE
VLTTRVNEVEERVSDIEDKLMAKRETEEKRDKQLKDHEDRLREINDSLRKKNLRLIGVPEGAERDRGPEYVFEQIIAENF
PNLGRETGIQIQEIERSPPKINKNRSTPRHLIVKLANSKDKEKILKAARDKKSLTFMGRSIRVTADLSTETWQARKGWQD
IFRVLNEKNMQPRILYPARLSFKMEGEIKSFQDRQELKEYVTSKPALQEILRGTLKIPL
>L1Ci-C_gag#LINE/L1 gi|34392585|dbj|BAC82625.1| gag-like protein [Ciona intestinalis]
VDSRGSPTCTTRKAVLDLYELLIKVDALYSVRLYESDKVNVAVGWVPIPFPNEVIKSEFQNRCGEVKHIQHRKDRNGLLT
GMRILTLDRADIEKNPIPSYITINNYEFYCTYNGQQITCKYCTKSGHKQQNCPKRKQDYPKLINKRNEKNQEDAECPETD
KSGSKLSAAGGEIKERSKQNGEQLDHSTTAASGESNNLKPILPDKNQNIEMEPMPKVSRKRQERSPTEINLHQAKSISLS
ELKIPVSCPKCEEESYVTDQNTNFFCWKCSSEFRIATACCNDNDKFLVPNKEVTTNCSTCHLPMRKMPCCHTFQPEFQTD
EGTFECIQCKRYSMTCICKTVNSIPKRTMTSNCTNNACNATLVHCSCGKKTCQNLEPDKPYQCECGFEYEYDIYIGVERS
>L1Ci-A_pol#LINE/L1 gi|34392581|dbj|BAC82623.1| pol-like protein [Ciona intestinalis]
MKIVSFNVNGLRNNAKRKCIFRFLKNKKFDVILLQETHSSLDVEVMWKREWGNAPTFFSHGTTSARGVCILLSPQQNWTV
HHTESDTEGRFLIASISAGPKRLTLANVYGPNSDNPIFFDSFFGIINDYLDNDAIIGGDFNAILSNDLDKSPGNKHANGK
SSSEIKNYMKEFDLVDIFRELNPRQRRFSRVQQNPFTGSRIDFFLVSEGLTPHIKNCDIEPSIKSDHRLVVLNINPQFKE
NGPGYWKLNNCLLDDPQFVNHLKSELGAFLTINETPDVSPHIIWDSLKCWLRGKFIKHAAEKRTSQTKEIDRIEKLLKAT
QRRIDSGEVSLQHKMRDLQSSLNTILEGKTRAAIVRSRTNWTENGEKNTKYFLSLEKRNKKRNTIVRLKQSGLVIADHRE
IMTTLKEFYRKLYSSRPTDTKQIDSHIRVAQLPQISEEEGSFLGKDISKTECYEALRKMGKNKSPGNDELSTAFYTTFWK
EIGGAFIKSTNHALKMGLLSGSQRNGIITLIPKPDKDPLIVENYRPITLLNTDYKIISKVIAERLKLVMPRLIHDDQKGF
FKDRYIGENIRLLFDVMDFAETENIPCVVLSLDLYKAFDLIEWVFIETVLQGYGLQSVVQWVKILFGKATGTINNAGFLS
ESFPIKRRVRQGDPLSPLLFVLAIECFAQHIRLNQCIEGINTADKELKILLFADDTLCFINGSSGSFNAMSEEIRWSKVV
SGCKINLEKSVTCAIGSMVKTQSRSTAIQLKWTKESFKYLGVTTAVPGSNLDFFQINFSDPLSRIKRIINMWSRRGLTLL
GKVTIVKTLIIPTLLFKLSVLPVDVPNAFTTSLNRSLFTFLWGSKWEKVNRKVLISPVAEGGINMMDITTYIAAQKLKWL
YELFNPASQSTWKAIETLIPESYLWEAIKLNLPNNHALIKTVIPYRTLRSSLTAARLVIGPTSRKDNEQRNYLWLNKNVK
LKKRLLFDKTLVEAGVTEYNQLLKPTGQYQTYEEVCEINNIAASTNHSLKFYELLNALPREWDQIQYKGNARTKEDITML
KDHLKDYAVSTKVAYQYFIQQVKEYPEKRRKKWEGELNLTTNFDWSNICQSNCYSTVETKLRSFQIKLKLRAVVTNACLF
NFGMIDSPNCVFCNTETDSLVHMFTKCKMIQSFWENINGWIVAKFRKPLIITDDIKVFGIQHEKSPNLINCILLGVRFYV
YRCKVQKHLPNVDSCIDYINEIRKTEKAIAMKSPL
>L1MA1_gag#LINE/L1 L1M1_5end_2055-3023 [Primates]
MPRHRRTSTSIKTIQENMTSPNELNKAPGTNPGETEICDLSDREFKIAVLRKLXEIQDNTEKEFRILSDKFNKEIEIIKK
NQAEILELKNAIDILKNASESLNSRIDQAEERISELEDRLFENTQSEETKEKRIKKNEARLQDLENSLKRANLRVIGLKE
EVEREIGVESLFKGIITENFPNLEKDINIQVQEGYRTPSRFNPKKTTSRHLIIKLPKVKDKERILKAAREKKQITYNGAP
IRLAADFSVETLQARREWHDIFKVLKEKNFYPRIVYPVKISFKHEGEIKTFPDKQKLRDFINTRPVLQEMLKGVLQSERK
GH
>L1PA10_pol#LINE/L1 2499-6329  [Primates]
MMTGSNSHITILTLNVNGLNAPIKRHRMASWIKSQDPSVCCIQETHLTCKDTHRLKIKGWRKIYQANGKQKKAGVAILVS
DKTDFKPTKIKKDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLRDLQRDLDSHTIIVGDFNTPLSILDRSSRQ
KINKDIQDLNSALDQVDLIDIYRTLHPKTTEYTFFSAPHGTYSKIDHIIGSKTLLSKCKRTEIITNSLSDHSAIKLELKI
KKLTQNHTTTWKLNNLLLNDSWVNNEIKAEIKKFFETNENKETTYQNLWDAAKAVLRGKFIALNAHIKKLERSQIDTLTS
QLKELENQEQTNPKASRRQEITKIRAELKEIETRKTLQKINESRSWFFEKINKIDRPLARLIKKKREKNQIDTIKNDKGD
ITTDPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITSSEIEAVINSLPTKKSPGPDGFTAE
FYQRYKEELVPFLLKLFQTIEKEGLLPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLI
HHDQVGFIPGMQGWFNIRKSINVIHHINRTKDKNHMIISIDAEKAFDKIQHPFMLKTLNKLGIXGTYLKIIRAIYDKPTA
NIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQIGREEVKLSLFADDMILYLENPIVSAQKLL
KLISNFSKVSGYKINVQKSQAFLYTNNRQAESQIMNELPFTIATKRIKYLGIQLTREVKDLFKENYKPLLKEIREDTNKW
KNIPCSWIGRINIVKMAILPKVIYRFNAIPIKLPLTFFTELEKTTLKFIWNQKRARIAKTILSKKNKAGGITLPDFKLYY
KATVTKTAWYWYKNRHIDQWNRIEXSEIRPHIYNHLIFDKPDKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTKI
NSRWIKDLNVKPKTIKTLEENLGNTIQDIGTGKDFMMKTPKAIATKAKIDKWDLIKLKSFCTAKETIIRVNRQPTEWEKI
FAIYPSDKGLISRIYKELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAANKHMKKSSTSLIIREMQIKTTMRYHLTPVRM
AIIKKSRNNRCWRGCGEIGTLLHCWWECKLVQPLWKTVWRFLKDLEPEIPFDPAIPLLGIYPKEYKSFYYKDTCTRMFIA
ALFTIAKTWNQPKCPSMIDWIKKMWYIYTMEYYAAIKRNEIMSFAGTWMELEAIILSKLTQEQKTKHRMFSLISGS
>L1Mdo2_pol#LINE/L1 1-3807  [Monodelphis]
MPGSPQVTVITLNVNGMNSPIKRRRIAEWIRIQNPTICCLQETHMRRVDTHKVRIKGWSKTFWASTDRKKAGVAIMISDK
AKAKIDLIKRDREGNYILLKGTLDNEEISLINMYAPNNIAPKFLMEKLGELKEEIDSKTILVGDLNQPLSNLDKSNQKIN
KKEVKEVNEILEKLELIDIWRKINRDKKEYTFFSAPHGTFTKIDHTLGHRNMAHKCRKAEIINAAFSDHKAIKIMISNGT
WKTKSKTNWKLNNMILQNRLVREEIIETINNFIEENDNGETSFQTFWDAAKAVIRGKFISLSAYINKLGRAEINQLEMQI
KKLESDQIKNPQQKTKLEILKIKGEINKIESDRTIDLINKTRSWYFEKTNKIDKVLVNLIKKRKEEKQINSIKDEKGDIT
SDEEEIKAIIKNYFAQLYGNKYTNLGDMDEYIQKYKLPRLTEEEIEFLNNPISENEIQQAIKELPKKKSPGPDGFTSEFY
QTFREQLIPILYKLFDIISKEGVLPNSFYDTNMVLIPKPGRSKTEKENYRPISLMNIDAKILNRILAKRLQQVIRRVIHH
DQVGFIPGMQGWFNIRKTIHIIDHINKQTNKNHMIISIDAEKAFDKIQHPFLLKTLESIGIEGSFLKIINSIYLKPSANI
ICNGDKLDAFPIRSGVKQGCPLSPLLFDIVLETLAVAIREEKEIEGIKIGKEETKLSLFADDMMVYLKNPRDSTKKLIEI
INNFSKVAGYKINPHKSSAFLYISNTAQQQKLEREIPFKITLDKIKYLGIYLPRQTQELYEHNYKTLSTQLKLDLSNWKN
INCSWIGRANIIKMTILPKLIYLFSAIPIELPKNFFTDLEKTITKFIWNNKRSRISREIMKKNTNXGGLAVPDLKLYYKA
AVIKTIWYWLRDRKEDQWNRLGASDLSKTVYDKPKDPSFWDKNPLFDKNCWENWKTVWERLGXDQHLTPYTKINSKWVND
LNIKKETISKLGKHRIVYMSDLWEGKDFKTKQDIERITKCKINNFDYIKLKSFCTNKTNVTKIRRETTNWEKIFIETSDK
GLITQIYKELNQLYKKSSHSPIDKWARDMDRQFSDKEIKTINKHMKKCSKSLIIREMQIKTTLRYHLTPSRLANMTAKES
NECWRGCGKVGTLIHCWWSCELIQPFWRAIWNYAQRAIKECLPFDPAIALLGLYPKEIMEKKTCTRIFIAALFVVAKNWK
TRGCPSIGEWLNKLWYMLVMEYYCAKRNNKVEEFHGDWNNLQEVMQSERSRTRRTLYTETNTLWYNRT
>L1_Mur1_gag#LINE/L1 L1_Mur1_5end#LINE/L1 920-2017 [Muridae]
MARGKRKTISNRSQYTWASSEPSSPTTASPEYTNTPENQEADLKSYLMKIIESFKEDINNSLKEIQENTGKQVEALKEET
NKSLKEIQENTIKQVKELHKAVQDLKVEVETIKKTQMEANXEMENLGKRSGITDVSITNRIQEIEERISGVEDTVEEIDT
TVKENSKHKKLLTQNIQEIQDTMKRPNLRIIGIEENEDSQLKGPENVFNKIIEENFPNLKKEMAIKVQEAYRTPNKWDQK
RKSSRHIIVKTLNAQNKERILKAAREKGQVTYKGRPIRITPDFSTETMKARRAWSEVMQTLREHKCQPRLLYPAKLSINI
DGETKIFQDKTKFKQYLSTNPALQRILEGKLQHKEDTYTKEKTRY
>L1_Ele17_gag#LINE/L1 179-1306  [Aedes aegypti]
MNTRRIRENTFRVEFSNLPKKPTSEEVHAFVAQQLGVSRTQLVRLQLSHTDECAFVKVIDLNTAQRIVQTHDNQHDYEMK
GVKYKIRIRMADGGVDVRLYDLSEHVSDEQVSRHMSAYGEVLSVSELLWSDKHHYAGMATGIRQVKMVLREPIKSYITID
GETTYVQYAKQRPTCRHCGEFMHTGISCVQNKKLLAQKVSVNDRLKRSSYAGAVRGASEGFSANETEEQRSVPLDNNAPF
PQVQAQVEVPSTSNAAVFPPLPNKESPLAVPQMDVASGTDLVPTQQALEDEPSTEMNQETPQRTVSIGDISSMSTDESCN
GNTLESSIVCNPNGELVVVTTEKPLTEGTGKHKNKNSNDTNPFILAKRGRGRSKKH
>L1_Carn3_gag#LINE/L1 1289-2168 via tfasty with L1_Fc_gag, 1 frameshift. [Carnivora]
MRRQRNLSQMKEQDKATARDLSETDISNMPDREFKAMIIRILTGLEKRVEDMSETLNTEIRNNIAEIKGSINEMRNTLDG
MNSRMEEAEERISDLEDRVMESNQAEQKREKRIMQNENRLRELSDSIKRNNIRIIGVPEEEERKGAENLFEEIIAENFPN
LGKETDIQIQEAQRTPIKINKSRPTPRHIVIKLAKYSDKEKILKAARQKKSVTYKGKPIRLAGDFSTETLQARREWHDIF
KVLNGKNLQPRILYPARLSFRIEGEIKSFPDKQKLKEFMTTKPALQEILKGTL
>L1_Ele17_pol#LINE/L1 1305-4502  [Aedes aegypti]
IKVDNHSYKIGTVNINNITNQTKTSALHNFIKTQDLDIIFIQEVENDKLDLPGYNIVCNVDNARRGTAIALKHQIKFSNV
ERSLNSRIIALRVHDTITLVNIYAHSGSQYRREREELFNFTLSYYLRHHTQHIILGGDFNSVIHSSDATGVSNFSLALKN
MVQQLQLHDVVNVLNRENKQFTYITHNSASRIDRIYVSSGLLNNLRRADTHVCSFTNHKALTVRLALPNLGREKGRGYWS
LRPCVLTTENIEELQLKWDYWTRQRRLYNSWIEWWVHFAKPKLKTFFRWKTNQMYAEYNRKYQILYTELREAYDRYLGDA
GVLVTINRVKARMLKLQREFDTLFIRVNETRVSGEKLSTFQMGECRRKRTTIDSLDIDDNRTIERSEEIEEFIFDYFKNM
YAGEEHEVNDEWMCDQTVSPNNEANASCMNDITTGEIYSAIKTSASRKAAGPDGITKDFFLKAFDVIHRHLNLALNEVLQ
GNIPEKFLDGIIVLIRKKNCGNTVKAFRPISLLNFDYKVLSRILKARLELILKESEVLSPSQKCSNFGKNIHQATLAIKD
RIVQLRETKRKGKLISFDLDHAFDRVDHHFLFQSMRATGLNPALIELLSNVYARSRSKILVNGHLSPEIQIKCSVRQGDP
ISMHLFVLYLQPLVHKLDQVCDDRDDLVVVYADDITVVTTCIDKIERIKQLFISFGRCSGALLNLNKTYCIDIGHFRTSE
PVNIDWLQTSEKMKILGITFCNSIRLMQKLNWDALVSKCAKNIWLHKMRDLNLQQKVVLLNTYITSKIWYVSSVLAMNKF
HAAKLTSLMGSFLWAGIPIRVSMNQLALPYDRGGLKLQLPSIKSKALLINRHLKEATALPYYTSILMNAQNPPYLNSLPS
NSPCLKLVYQEISYLPIQMRDNPTSNALHTYFLNQMDCPKVVSKYQNCNWVAVWRNIKSSQLSSLERSFYYILVNEKIAH
AELLFRMQRVDSAICPNCLSGAESLAHKISTCPRIAESWRILQQELLKVYPDKTFNVEELIRPSMKINRVKKIKILKLFV
NYVIYINEFNSNIDNTALRSLLGNII
>L1_Mdo1_gag#LINE/L1 664-1641 [Monodelphis]
MAHMAQNQASRKKGKKVTIENFYGGSTQGKEENEDEIQKKSEHASQNGNYQQALEDLKLELTQKMETWKEKWEKEISSLT
DKTAQLEKELEASNRRADKAEKQNQSLTTRIKQLEESEIIKQQESIKQTQKINELEENIKYLTEKVTDLENRGRRDNLRI
IGLPEKPEINNKLDIILQEIIKENCXHVLEQGGKIEIERVHRTPSILNPQKTTPRNVIAKFKSFQEKEKILQEAKKRSFR
YRGAPIRITHDLAANTLRDRKAWNTIFRKARELGLQPRINYPAKLTIYFQGKVWAFNKIEDFQAFAKKRPELSGKFDIQA
QKARET
>L1_Ele26_gag#LINE/L1 171-1346  [Aedes aegypti]
MASVRPRENTFKVDLTNFPKRPTFEDIHKFVYETLGLTVDHVVRLQMNHAQNCVHIKCRDLQTAQDVVQMHNEKHEIEVN
KTKVKVRLVMDDGGVEVKIHDLSENIRNEEIVAFLKQYGDVITIKDQIWSENYPLKGIPTGVRVVKMMLRRHIKSFVTIQ
GEQTLVTYRNQVHTCKHCTNPSHPGSTCVENKKLLGQKADLNDRLKLAAQSNNNPSTSFASVVNKSTATLMPHFVSLNEL
ASSAPASVATNNTVSTCSLPSVSDQPEIPAATTDGNDMQMKTTGMEEQWIDSAQQNIGEASTSGGITAGESAKQPSAGDQ
STHQAATAVHDKATTSSVSVFKIPSNPSNTPNLTMEISDSDSYESSQDNGSFQKVKRRGRPKKPKIDPXFRS
>CR1-32_DR_pol#LINE/L2 1-2436 Fragment, via tfasty with CR1-17_DR_gagpol, 1 frameshift. [Danio rerio]
YCIFHFYLLFSDILILEDNIHVLCRTDLLLINNLLDSFGLSQCVVGPTHEHGHTLDLVLTSGFSVCNLQIADTVFSDHKA
VLFNSYFTFNCQADDSSVAVETRVLSASTASNFSSAFDMGSSRSLMEFPSSDMGPEELVIQFNSICSNILNSVAPLKIKK
KKVKPQPWVNSNIRALRQECRRAERKWLKDKLQVSYESLRDCLTTFQRAVKAARSNYLSDIISKNCHNSKVLFSTINTIL
QPVVSPSISSSVDTCEKFLHFFADKIVGIRSQISPVVSVSTISVAPLKNLASFIPVSLSQLNDIVAHMKPSGSSCDVIPA
TLFKEAMHSIGPSVLSIVNSSLSTGIVPSSFKHAVIQPLLKKANLDVSDMKNFRPISKLPFISKILEKVVSVQLNEFLAN
NNIFDKFQSGFRARHSTESALLRVSNDILLEVDSGSPVVLVLLDLTAAFDTVDHDILTDRLREHAGIQGLALDWFSSYLK
DRTISVSLGNSSSSVMQLMCGVPQGSILGPVLFSLYLLPLGKFFEKHGINYHLYADDSQIYFPIKSRDQSSLQALLNCLA
DVKCWLANNFLQLNEDKCEIIVFGQKGSDSNGNLSLLPGKIHSSVKSLGVIFDSELKFDRQINAVVKNSFFYFRYIAKLK
SILSFSDLEKVVHAFISSRLDYCNALYLGVSQASLSRLQLVQNAAARLLTGTKKREHITPVLVSLHWLPIQFRIQYKVLL
YVFKSLHGLAPEYISELIIMHQPVRSLRSMDRLYLQVPRSRLKCRGDRAFSVAAPRLWNDLPLSLRTAQTFESFQRSLKT
HLFSLAFNHVM
>CR1-21_HM_pol#LINE/L2 930-4013   [Hydra magnipapillata]
SFLKVFGLIYCYIFLIFLNYSLKMATHFENLKSFEENINIFQETQINLIDTPYIDPFDFKTTNDHCSFSVLHINIRSMQQ
NFEKLKEFLNIINYTFDVIALSETWHDFENSLELNSIYNLPFYKLISQPRKSGKKGGGLGLYVSKKHDFKIKNVLSFSND
NYESLFVEIINKKIRNVLIGCVYRPPSGKVKTFETFIKNTIEKINKENKTFYVIGDINLDALTCSKFPKTKSFFDMLLKF
NVLSAINKPTRVTKTSATAIDNIFINNYLEMELETGIFMTDISDHFPIFIKVRNLKTMSDYEPKVINLKKRNLKTSNTNE
LSIRLKQETWSNVYRCQDTNEAFNNFLDIFLDCFNKTCPLEGIIIKTKTVSNPWMDKSLIKCSKKKQKLYNKYLKNKNTD
NEKNYKNYKYFYQNLIKKAKNKYYSNEIIKCKSDSKKTWSVINKIMGRKKINTTSLPKRININNTDIFCEKQISEEFNKY
FINIGPNLANKINPTTDSFKNYLTPTNKAIMYDKEFVYKEFEEAFSSLKKKKAPGFDEITSDLVIFNKTSLSRPLIHILK
LSITSGIFPDVLKLAKVIPIFKCNEHSDITNFRPISILSVFSKLFERVIYNRIYNHFTKNKLFYPNQFGFQKNLSTEHAI
IELVNQITDGFNQNKFTLGVFIDLSKAFDTVDHCILLDKLKYYGIINKTYNWIKSYLTNRKQYVCNIQSGVLNVLCGVPQ
GSILGPLLFLIYINDFCNASLKLNSVMFADDTNLFLTNSDIKNLYADMNIELIKVNNWFRANKLSLNSEKTKYILFHKKA
QEENLPLKLPDLILNDNLIKKQASIRFLGVLVDEKLSWLPQIRYIQSKISNIIGLMMYRVRSYINKQSLKLIYFGLIHCF
ISYANISWASTQPSKLKKIYSLQKHACRIIYFKNKREHAKPIMKDMKMMDVFEINIYQHLIFMYQFNNNLSPTNFTNKFE
ININENYYLRANISNTYKLPQNLNKYTEYSIAYRGPNIWNRYQKGSKCMAKSLSSFKFLIKKEIFKI
>CR1-34_HM_gag#LINE/L2 24-1086   [Hydra magnipapillata]
MAAKFTEDLLLQESKTKNNNNANQTETISYLNDFESFLLDFAEPQANLRMEHSKIFMNAINNIHKRKKRADTESIYEEVL
KHFENRLEKLHVSEFLNLLVSKNLLSCSIKNGKESYKVLIVPETKLEPDLCIINHKKVKTLESEIKILNYELKNLKSSEI
SLSILKDENLFLKEELSEXRKIIAVLIDKLEVKSTVTDLKSTQNLNFLNDFDFNSPLNQNSINSPKAETINAFRQQECGI
KIIDSKSKEIKDRLNNDLTDVRRQLNIKYLNFKKYNIPELAVSSNSNNNKTMRNSINNFENVTNQLVSVRKNYQSDFLKY
KNLSTNGVVSTSSSLSTKAVGNVKNTKKSNKKSKQ
>Crack-1_BF_pol#LINE/L2 1408-4524 [Branchiostoma floridae]
MSNTSTQTDDFNSTPYNFEDGNLIFNPFMLDSDKESNFTDSWDPDVNFYGNFLDTNTNTPCVNYSENQFNSMCLKSGHNT
NAFSALHLNIRSLPRNFDNFTHYLSTLNHDFSIIGLSETWLTQSTLQLYDFPNYTSVHRCRSNRVGGGVSLFIRENLEFV
QRDDLTIHSHEGNVESIFIELPVSSSPTRKNMILGCVYRPPDTDIKDFTSHLATTLDTISKEGKTCFLLGDFNIDLLKNE
RHTLTTDFLNMLFSCCMYPTITKPTRITDKSATLIDNILTNSLSESYTSGTLVTDISDHLPIFYIMKCKSDVSKTNSTKR
RLRKFTSSNITKFKNQLADVTWDKLYNYSNTNDAYSHFIQVITSLFEECFPIVTHSERNVEKNKPWFTPALHKSSIKKNK
LYKKYVRNPNPTSFQTYKTYRNKFNTLIRLSKRNHYHKKFKETTDNIRTTWKLINELLNKKKKSNVLPSKLCDDTYEISN
PQDIVDAFNNFFVNIGPSLAKKIDKTDCSPLSFINNVYPSYSFFETPTASEVQNIICNLKNSAPGNDELSTSLIKQVSSS
ILEPLTYILKLSLETGMVPNDLKIAKVIPLFKSGNTCLLSNYRPISVLPVFSKVLEKLVYKRILQHLEDNNILHEHQYGF
RKHHSTYMTLLKLVDKITSAIEKNEFTIGVFLDLSKAFDTVNHKILLEKLNCYGFQGYVFTWLKDYLSNRKQYVSNNTYS
SDTRSISCGVPQGSILGPLLFLIYINDLAYVSDELYALLFADDTNLFSSHSDLDILVSKMNRELDKVNKWFQINKLSLNV
KKTNFIIFAGKKKYNKENVKIAINNTPINQVTHTCFLGVTIDDKLTWKKHIDLICKKIYKNIGIVRKIATLLSSKTYMIL
YYSLLYPYLAYCNIVWASTYSTSLKPLLLLQKRFVRIVSNVSYTFPSASLFRNLKVLTIYDINKLQSCLFVHKTINSSCI
PKQFQNLFHHNSDHHHYNTRQSNHLKQIQVKTQQRKFSMLFKCPQIWNSLNETLHLCHSPPIFKNLLKKSLLDNQTFN
>CR1-79_HM_pol#LINE/L2 821-3907   [Hydra magnipapillata]
MAYKTIDFETKQLNFFETDNNILLNDFYDADKQVFKELDFNLQYYDTETFKTLLKTYIKNFTVIHINIRSLSLNIDKLKH
FLLESNFLFNMICLTESWCDDESAQKNSNFQIPNYKIISSERKTLKRGGGILVYIRNDHDIKIRKDLSISNSDSEVLTIE
IIIKNTKNVVVSTCYRPPDGDVIQFSNYMQQILIKSNNEQKRLFCIGDINIDSLKYNEHPNTKIFFDNIFQHGIIPIINK
PTRVTTTSISAIDNILTNSFLDKSIKTGIIKTDISDHFPIFFSFAEHATINDNSKIKVLKRKMNEHSMLKFKESLSTINW
INVYQECNLGHTNSAYNLFLDIFLEYYNKHFPIQEIEVKTKYLKCPWITRGIRKSSKKKQKLYIKYLKNRNEANLNAYKK
YKNLFEKIKNKSKKRYYSQQLKNNNGNIKKTWEVMKEIIGKNKIVSDILPSRITENDIEYKNKKDISEIFNHFFVNTGLN
LASKIKGSETSFQNYFSDFESSLPDSNLTFDELETAIKSIKKNKAPGIDDISGNVVLYIFSVIRKPIFNIFSSSIKNGIV
PDKLKIAKIVPIFKGGDTSAISNYRPISILPIFSKLLERIIYNRLYKYLIEHKILSENQYGFQTQHSTEHAILDLINNIT
TSFNDRKFVLGVFIDLTKAFDTVDHTILLRKMEKYGIKNQTIKWFANYLDNRQQCVTIDHYNNSKQLKIKCGVPQGSILA
PLLFLIYVNDLPKVSSKLDCIIFADDTNLFYSSSSISDLFITANLELIKLNTWFRANKLSLNLNKTKYILFHPNQKKKAI
PSILPTLSIDNTIIERTQSSKFLGVLLDEKLSWNSHINTINTKVSKNIGLLYKARNYLSFENLKLLYFSFIHSYLSYANI
AWASTHKTKLSSLYRRQKLASRIIFYKNKLTHANPLLKQMNALNIYQINIYQNILFMFKHKMGIIPSRFMNNFFKTNINK
FSTRATGNYIVPLKKRKLSQFSIAYRGPYLYNKLIPKNSSISLLKNINSLKSYLKKLVLNTSSYMEIF
>CR1-21_HM_gag#LINE/L2 118-930   [Hydra magnipapillata]
MTKSEEFVSIVMMREMLNLQKETIISFFRESILSTNLKFDIFQSSIQDIRRELDDLKSGLNFVGGVCEDKVKAVGEKINK
VCEDLTNVRKMQGKISSDNTELKLKSVDNEDRNRRNNLRIDGIIETNEEKDWDITKEKIKQLFNVKLGIEKDIKIERAHR
VGLAKLERERTIVLKLRDFEDKKVILENAIKLKGSNIFINEDYSFTTRKIRKELFEQAKLHRQNGHYAKVVYNKLIVHEF
KENIHKVVNLTHGNEAIERNAAVCLTHGNE
>CR1-9_SP_pol#LINE/L2 2-2032 [Strongylocentrotus purpuratus]
FNESFNTNLPLQRPAQPNYKKMPRPPWISKTLLRSIHRKNRLFYRYKTEPDEKNKRKYTHYRNKLTVILRVAKKQYYSRQ
FNIFKSDIKSTWKVINTVLNNKNKNQSDFKDIYVDGEHLQNNTSVANAFNSFFVNIGPNLARNIPDSNLPFHSFLRGNIP
NSLFFLPTHETEVIDIVNNFKLKNSSGYDGITNVLLKKIIHVIVSPLTHIFNLSLTTGTVPNKMKIAKVIPIFKKGDQQD
VGNYRPISLLTIFSKILEKIVYSRLIAFLNCNHVLSGSQFGFRKKHSTAHALLLFINKIANAIDNVLHTAGIFLDFSKAF
DTINHDILLHKLSHYGVRGRALEWFRSYLSGRKQFVYIDGSESTLQPITCGVPQGSLLGPLLFILYINDLKNSSEILSFI
LFADDSNLFCSHKNPETLLNTVNTELNCVFKWIQANKLSLNINKTYFMLFSNSVSSLPGHIKINNVTINQVESTKFLGVY
IDSKLTWKVHINCLCKLLSRNSGVMNKLKPFVPPHVMLLLYSTLILPYLNYCILAWGNSSITLMDKVNVVQKRAVRIINN
VGFLAHTNMLFYNCNILKISDLHLYNIGIFMYELSKDNLPDAFVPFFFQRNNTIHSYPTRQTNHFHLPRTRTVFANKTII
FTGPKFWNSLNNELVESPSINSFKRKLRCFLLSKYV
>CR1-9_NVi_gag#LINE/L2 6-1198 via tfasty with CR1-4_NVi_gag, 1 frameshift and 1 stopcodon. [Nasonia vitripennis]
MESSSAGSVTSQTAIFYKCHPKVEVKTVICIICEEAFHTSDFAKIDGAVKISGVLGLCPEHNQVDLTSKVNTNVLSNEAK
IIIAQIKLAHNLRKSDQLSVSEADSDDDDENSVKIDSNLKCENALLKELNKELKEKNKLLRELLDKQKSEINSSKNKTYA
QVISSAMPNNKPKRIPKIIVKNKDTKEFSIDKINDVVAHYLIKDKSIQAKKLIKKKSEIIVDCxMLTEESASKAYNVLKK
KLDESCDVIKEKIENPKVKVVGINNFETLDNKKIEDDINERNFSKFNKKCTVLHSYNNSKTHLQSVILEIPAELYQHVRE
NKNRIFVGYQNCKVHDYCNIKPCFNCGRYGHNGFKCTNNHTCLKCAGNHKTTDCTGNKLNCPNCIFSNNKYKGTLRIN
>CR1-13_HM_pol#LINE/L2 803-3898 CR1-51_HM_pol 90% similar.  [Hydra magnipapillata]
MPLKKKKKKKSMAGTSDFESIKFNFSEINNMKIKPDINNLHDTLMDCSYHYPSELEGFLFKNVCDKSFRILHVNIRSLNN
NFEKLLSLLEETKXCFNIICLTETWISNDLNNSSNFYIPHFKLISLHRQVNKRGGGVLIYINENIVYYVRNDLSVSDGDK
EILTIEIINNKSKNILLSCCYRPPDGVSENLSIFFEQSIFKKGIKEKKKNFIIGDLNMNCFLYSKDNKVKNFYDSFFETG
AIPLINRPTRVTKNSASLIDNIITTDISDNDIQTGILKSDISDHFPLFLSLKSNSEKITKSNKIKIRTFNETNIKQFKSQ
LSLLHWKHINFNDNADKIYDIFETFYSVYDANFPIIVKTLNPKNINNPWVTRGFKKSSKIKQKLYIKYLKTKSSANEKIY
KEYKYLFEKVRKNLKKNYYSRLIDKFKNNSKRTWQIMNEISGRQKKCSGSLPQTIVVDNKHICESRAIAHEFNKFFVDIG
PKLAKKIPYTNATFKDFLVQMDNCTSSNELSSELXFHEFEKAFKTLKKNKSTGADDINGNIVIECFEYLKDILFKVYGAS
IRQGVFPEQLKIAKVTPILKEGDQTIISNYRPISVLSTFSKILERIMYNRLYNYLHSNNFLYNYQFGFKKNNSTEHAXIQ
FVREISNSFENCKYTLGVFVDLSKAFDTVDHEILLQKLKYYRINRKVIKWFKSYLSNRKQFVFGNNDHPNKFLNISCGVP
QGSILGPLLFLIYINDLNKASNLMSIMFADDANLFFSNNDICKLFYTMNNELKSISKWFKCNKLTLNIKKTNWVLFHPVS
KKAYLPQXLPKIFIDDVEIKRHXVTKFLGVFLDENITWKXHIDYIGAKISKNIGILYKTRTYLCKKSLTQLYYSLIHSYL
NYANIAWGSTEKSKLKCLYRRQKHAIRLINFADRYTHSKPFFIEMKVLNIYELNVFNVSCFMYMWKNDISLPIFKDLFCS
KPINKYTLRNNNFIHEPFCRTNFNQFCIAYRAPYLWNKIVLPNFNMHFTFPIFKYKLKNLILFMDDVVRFF
>CR1-18_HM_gag#LINE/L2 129-959   [Hydra magnipapillata]
MDKNKSSDKKEFQLNTEASEISVKLVREIFSEMFKKQQKDILKLISGNLKITNERIDGLLKEIAEIKETCKTLQIENNLR
KSEMVKTNDRVSIIEHSQKDIEHSITFTQDIQEEKINKIEKKIVTKVAFSVEEKNKLRQLEDRLRRNNLRLEGITESESE
SWNESEEKVLSIFENKLNVSGVVIERAHRTGKTGQSKPRSIVIKLLNYKDKVNILKNSKKLKGTGIFINEDYSLDTLNIR
KTLFEEMRTHRTNGKYSVVIYDKLVVKDFKKSLKKA
>CR1-14_HM_pol#LINE/L2 50-3142   [Hydra magnipapillata]
MDSTYRNDFEKISNLFQTNTFNLDNESDPDINYFNEINGSKFECSYFYPDKIKSIFKNNDNRDYFNIIHINIRSLKKNFD
NFLNMICQTENFFNVICLTETWCTEEDFKSNSNLHLTGFNTVFLERNVNKRGGGVLFYIKENLAYNIRSDMSVSDDNIEI
LTVEIINKKSKNILLSCCYRPPTGRTEYLSNYLVHNIIEKTSQEKKKNYILGDFNLDCFQYNEKKYITKFYNHLFETGTI
PIINKPTRITKSSSSLIDNVLTNDYFNITLKKGIIKTDVSDHFPIFFCLGADHKTNTNGKITLKKRIYSNNNLNLFKEQL
LHQDWSYINFNEDINIIYKSFFNIFYKIYEANFPIREIVLNAKDISCPWITKGIKKSSKIKQKLYIKYLKNKSDKHKNNY
TVYKNLFEKLRKKAKQIYYSDLLIKHKHNSRRVWQIMKEITSKHKTNTNTMPNAIKFENKLITDSNEIAAEFNNFFSSIG
HNLSNKIPYVDNNSVDEFISSPNSTINFSNLTYNEFEIAFKSLKRNKAIGPDDINGNIVIDSFNEIKDILFKVFKASITQ
GSFPNSLKIAKVTPIFKTGDHTNITNYRPISVLPVFSKILERIMYNRIYTYLIDNKLLYKNQFGFQRNSSTEHAILQVTR
SIADSFKNSQFTLGIFIDLSKAFDTVNHHILIKKLESYGIKDKTLNWFKSYLSNRKQFVYNKESSSQIIKNITCGVPQGS
ILGPLLFLLYINDLYKASTLTTVNFADDTNLFQSHENIEILFNNMNNELKRISYWFRKNKLSLNTDKTKFILFHPTSKKK
RIQNILPDLFIDNTIIKREKFTKFLGVIIDENLSWSQQIDSISMKVAKNIGVLYKARYILNKKQLTQLYYSFIHCHINYA
NIIWGSAHKTKLKSLYRHQKHAARIINFGNRFSSSTPLLIEMKALNIYELNIFNILCFMFKCKENLSPSVFINLYNLKPK
NKYELRDSKNIQEPFCKTKIDQFCISYRGPFLWNKIVLPNFDFSFKWSYSSFKKKTKEIIFSTQNIFIYF
>Crack-2_HM_pol#LINE/L2 1216-4302  [Hydra magnipapillata]
METNNNDFEKIINLFETHALHLDDESDPDINYFNEINSPEFETSYFYPSNVSKILKSENKSDYLNAVHINIRSLKKNFEN
LSNFISEAESSFNLICLTETWCLHADFKNNSNLHLPGFDPVILERSTNKRGGGVLFFVKNDLLYKVRSEMCVSDENKEIL
TIELINKRSKNILISCCYRPPTGRIENFGNFLLNNIIKKTDLEKKKNYLIGDFNINSFDYYENQSSRKFFNGLFETGTIP
LINRPTRITSHSSSLIDNILTTDFFNKSLKKGIIKTDVSDHFPIFFSICVNLKKEKQGKLLIKKRLINNNNLNSFREQLS
HIDWGYINFNDNINIIYDNFFKTFYQVYDSNFPLIEIVLSDKEMSSPWITKGIRKSSKIKQKLYIKYLKSKSEKHKQNYK
TYKNLFEKLRKNAKKNYYSNLLNKYKHNSKRVWQIMKEVSGKLKPNKNLLPNFIQIENKLINDPNDIAFEFNKFFSTVGT
KLSDSISFIKDKSVDEFETSISLNLNFTELAFNEFEVAFKSLKRNKATGYDDINTNIVIDSYDVIKDILYKIFRASISQG
SFPDKLKIAKVTPIFKTGDRTNITNYRPISVLPVFSKILERIMYNRIYSYLVENKILYENQFGFKKNNSTEHAILQLTRN
ITDSFKDSCFTLGVFIDLSKAFDTVNHQILLKKLISYGIKDKTLLWFESYLTNRKQFVYNKDSISHLLMNITCGVPQGSI
LGPLIFLIYINDLHKSSNLTTINFADDTNLFLSHKDINMLFTNMTNELKKVSVWFKQNRLSLNIEKTKWTLFYPPLKYQK
LPHIMPDLLIDNIIIKREKVTKFLGVYIDENLSWRNHIDNTSNKIAKCIGILYKARNILSKHQLTQLYYSFIHCHINYAN
IIWGSTHRTKLKSLYLHQKHATRVINFKNRFFHTKQLFKEMNILNVYQLNVFNILCFMFKCRENLSPNVLQNFYCMKPKN
KYNFRINNSLIAPFCRKSKDQFFVSYRGPYLWNKIVLPNFDFSTQMTFASFKQKLKKIIFLIENILIYF
>Crack-23_BF_pol#LINE/L2 2-2371  [Branchiostoma floridae]
VLLGDLNCDMFVSSSSKKVDNLCKTFQAEQLVHEPTRVTATSSTCIDVIISTCPEKISECGVRATGLSDHCFTYAVRKAK
QPKGTPRMANVRSYRNFNELSFQEELSSASWAEVKNCSDVNDALSCFLSILSAICDKHAPWVTIRVRGHAPPWVTQEYLA
MTRDRDFYFHRAKKTKLPFIWDTAKKLRNKCNNMAQYLKKQYYSNEIKAKSNDSKGLWSTLKTLPGKTRHPVNIPNKTEK
DTANDFNMYFTSIGSKLAAAFTSVYNVTVGPPKSVFQFNEISTDFTHRQLLNIPLGKSTGLDGVSSRLIRHAAPVIAGPL
THIYNLSLSTGVVPSDWKMAKVTPLHKDGDKNNCNNYRPISVIPSFMKIFEKAIHAQVYSYLKEHNLLNECQSGFRPKHS
TSTTLLHVTDNILNNMDKGLVTGAVFLDLRKAFDTVCHEILLQKLRFSGIQGMALTWFHSYLSNRTQTTVINGVNSNLLE
LSVGVPQGSVLGPLLFILYINDLPEQISHGHIVLYADDTALFFAAKSVSDVNRALNADLQNISEWLETNRLTLNISKCKA
MLFGSSKRLHLGNEQLTTYLSGTHIEVVPCFKYLGVWFDSCLTWQFHIEKLTNAVSARIGVLRRLVPVLPQDTLAMLFNC
LILPKVDYCDVVWGNCGKGLSDKLQKLQNRAVRIILGLSYRSHVNNEHLSALGWKDLASRRKLHLLQTVYKSIYNLLPVY
LNIFSRTSESHSYSTRHSLNQSLRIPKVKLESGKRTFAYRGAESWNALPLTVKTAPSTQTFKTLCKNVV
>Crack-21_BF_pol#LINE/L2 1-2328  [Branchiostoma floridae]
YDLTNLITEPTRVTERSSSLIDVILTSNSSKYSSSGVYKGGLSDHHLVYTHRGLKQPKPAPKWISARIFKRFREEDFIAD
LERVPWSTITVFDSVQDMWSXWKSLFETVCNKHAPIKKFKVKGTERPPWLSDDIREIMSLRDQARCTAERTGNEKDWETY
RHLRNHTKRLVASRKRSHYTEEINKGSTNDMWKSLKSLLGKSKSGSILSMKDDTGETSSSPDIAHKLNNYFGTVAEKLAD
SIKKTMPSFSPLVYVRRCLARFSFKSITADFVKQELKLLSSNKATGLDHLNNRLLKAAAEVIAQPLTTILNESLKKHEFP
EDWKRARVTPIHKAGDRSLPNNYRPVSILPAVSKILERAVHIQLYEYCTENNILSEVQSGFRPKHSTQSATHLLVEKWFT
AMNSGNLTGAVFIDLSKAFDTLDHSILLQKLFKYGIQGGALDWFASYLSGRQHCTSVNGVLSSFHTVKYGVPQGSILGPL
LFIIYVNDMPNCIQNCEISMYADDTVIHFSSKDSGTIENALQTDLERLSQWFAVNYLSINEGKCKCMLIGTDKKLKTCTN
PRLAVNGQFINLCYMYKYLGIFIDNQLNWKRHVKDVLSKLRRALSIMKHVSPFVSTSALRTLYNTIFLPYITYGSTVWDT
APEQDLQKLQRMQNRAGKLLLRAHYRTPSAEVLTRLGWKNIKSIHRQQKALLTYKALNNLLPVYMRNLFTYCRERSTRST
RQSESNLLYLPMVHREAFRRCITYSGTVLWNSLRENVRQAPSLSSFKNLTRLEIM
>Crack-32_BF_pol#LINE/L2 1-2349  [Branchiostoma floridae]
EELKFLCDAYDLSNVITEPTRVTEGSSTLIDVILTSNPSKHSNSGVYKGSLSDHHLIFTYRGLKNPRPPPKYISTRIFKG
FDEGKFREDLATIPWDTLNILDSVQSMWATWKSLFETVCNKHAPLKKFRVRGEDCPPWLTQDIREIMALRDKARHTAEST
QSQTDWETYKQLRNHTKRLIISSKRTYLTDEINNGNTNGMWKSLKSLLGKTKSSNISCLNDANGDMCSSPLEIAQELNKY
FGTVAEKLARGINTGMSLLSPLQFVHRCLARFTFSQVTTESVQRELLALKTDKAVGLDNLNNRLLKAGAEIIAPSLTNLF
NESLRRSEFPDDWKKARLTPIHKAGDRAAPNNYRPVSILPAVSKILERTVHTQLYKYLTDNSILTEAQSGFRPGHSTQSA
AHLLTEKWLDAMNDGQLTGAVFIDLSKAFDTLDHNILLQKLFCYGIQGGALDWFTSYLSSRQHCTAVDGSTSDFHRMQYG
VPQGSILGPLLFLIYVNDMPNCAQFCNISMYADDTVIYYCSKDVSSIQENLQNDLNTLSQWFMANSLSVNSGKCKFMLIG
TDKRLNSCKSPNLSINGAAVTECKMYKYLGVLIDRNLNWKCQVNAILCKLRRSLSILKHVRTFVSTPTLLTLYNSICLPH
IMYACTVWDSAPERELEKLQRMQNRAGKLILRAPYLTPSAEVHSRLGWKDVKSLHKHHKALLVYKALNNKLPPYIRRMFT
FCRDRSVRTTRRSASDLLVVPKPVREVYRRSLAYSGSLLWNSLVPEARAATSISSFKRXVTR
>Kiri-2_CQ_gag#LINE/L2 290-1114 [Culex quinquefasciatus]
MATNTTTVDDKNNNKQFLQSSYVQGCQSSIDGRIGENSMTLDIAVRMLMMQFTEMKLMLETFRNDFNRKIDTIKSELQGK
VSVLQSDITTLKAEYEGKFVNQDAALGQINHRVNHLYLNIGALENQKELIISGVPFVSDEDPDALFAMICRQLECSEGEE
LLTSTRRVYVNGLKNGDVSPLLVEFALKTTRDRFYSTYLRRRDLKLRHLGMPSDRRVFINENLNAGAREVKKAALLLKKV
GKLTSVFTKGGIVHVKRRVGDPPIAVQSVKDLDDV
>Kiri-1_AAe_gag#LINE/L2 166-984 [Aedes aegypti]
MHQNKHITRSVSTSSVNDGNITKRPRDETXSPAGVEDENRDLXNKIQXMFETSNSKIEAKIDASISRLEQRISGVEKQFA
TFQSECTDNINKLATAVTEVRVGLKTTTQRIDMLEKSNDLLISGLPYVVNENLHQLFRNIAASLAYADSDLPLVDLKRLM
RPPITAGSSPPIVCQFAFRNAREEFYKRYLKTRNMTLRTVGFDSDQRVYVNESLTLQARAIRTEAIKMKKNGILLKVFTR
SGIVYVQRXEGSAAEPINDISHLRAGFSSNLSX
>Crack-5_HM_gag#LINE/L2 194-927 via tfasty with CR1-27_HM_gag, 1 frameshift. [Hydra magnipapillata]
MDLSMKNIEKLIISKLEDQKQNILKETEKLLKKQEETFTKIMSSNIKIISDRLDKLEKELSFNKSRVEILEKDTSDIKDS
INFQEENIKEMLSQLNLKINEEINTLKEKYIDLENRSRRNNLRVDGVAELSSETWDDCARAVKKIFKNQLGIADDIVVER
AHRIGRVKDKLPRTIVLKLLNYNDKCKILTSVKKLKGTGIFINEDYAKETLEHRKKLWEEVKRHRKEGKYAVIKFDKIFV
KDMHN
>Crack-3_CP_gag#LINE/L2 382-1425 [Culex pipiens]
MSAEPSICAVCKVAEPEATKIVTCVNCYKSEHTECKGVYGSSAAALRAKPYFCSVQCCEIHHRCQNSTLFSGIDDKVMSE
ILIEVRKTNTEMHDIQQTMGELKRFNTYVGNQIEVLVTEIKSVKRDYVKVKQDVGYLQSDQKQTNETISDLQLSLDRVNR
AALIKNAVILGVPTTQTEDTKQLVRQIAAAVKCQLPQDAIVEATRLVSKDPSQRTSKSVPIRVVFAEEQHKEDLFAKKKN
HGLLFTSALGAGSGPATNRIIIRDEMTSFGMKLLKDVRSLQEQADIQYVWPGRDGVILTKKSSDSKVEKVRSLLDVRKLQ
QSKRSRDESLLHSTDLSMSILAEPDPKR
>Crack-3_BF_gag#LINE/L2 432-1190  [Branchiostoma floridae]
MAPRKGNTSEDDSVSLSVVKELLELQERNFKSFLDTIMESTHKRMDNIIREVQEIKDSLHFSQKEIDDNKLNLYRHVQKV
EDIETEITLLKKDITANDTKVDYLENQSRRNNILIDGVADTKDETWDQCEQKVRDLLKEKLKLDPKQIEIERAHRNGRFQ
DGGRPRPIVAKLLRFKDKDTIIKRAKYLKGSTIYMNEDFSEKVRQKRKELIPEMKAARERGNIAYLKFDKLIVHPPGEGG
ADRRRTRADSRH
>Crack-3_CP_pol#LINE/L2 1486-4383 [Culex pipiens]
MSMYCNIEFECMQQWIVNKFCTDVVSLKILQLNIRGMNDLAKFDGVREMLQQYGERIDVLVLGETFLKADRTCIYNLDGY
IATFSCRNESSGGLAVFVRNDIDMDVLENRTADGFHHIHCQLRSLNKRIDCHAVYRPPSFGATRFLDEMDQILSKTKNGH
DCIIVGDMNIPVNKPSINIVQQYSHLLSSYGMVVTNTFVTRPASGNILDHVICDEKLSHSVTNETIPSDLSDHCVVLSTF
RRAEPILKRTLEKQIIDHRRLNQLFFDRITTLPQTLTADQKLSHVINCYNTLLPQCTRTVKAQVNIKGHCPWMTLHLWKL
IQIKDNTLKRKRRNPNDAHLSELLAHVSKKLQKEKAECKRNYYSNQLSSGDQKASWKVINEAMGKNSSRAYPTELLINGN
KTTDSNQIAQHFNDFFSNVGPNLAATINSDREVHKFGTLSALPEGNSLFLRPASINETIALINALNPKKSPGPDGIPASF
LKANFVFFAHLLTDVFNEIVETGVYPAVLKVARVTPVHKSGDKKEANNYRPISCLSILDKVIEKLIVSRLVDFITQHKLL
YAHQYGFRQGLSTLSASCNLVDDIYDSLDKRELVGALFIDLKKAFDTIDHRLLLEKLETYGIRGVAKAVIESYLSDRLQF
VSLGQVRSTLSPVITGVPQGSNLGPILFLLFINDIGKLKLKGTTRLFADDTSVFYHGKDCALIQRQITQDLELLDDYFQT
NLLSMNLSKTKYMLIRSPRKQLPARQPIVFNGQQIEEVNQYPFLGLTLDDTMSWLAHIDLLKKKLAPICGILWKLSSFLP
TSCLKKLYFSLVHSRLNYLVTTWGLAYAVHLHDLQVIQNRCIKAVFRKPYLYPTSLLYSNPADSLLPLRALQKLQMLTHV
RKCHLSTTTASTFPIREQTSENDRATRQLGDFILPLPRTEFGMKRVAYVGCKLHNELPTVCKNASQGAFKLSLRNHIKSK
IIDYLV
>Crack-5_CQ_gag#LINE/L2 358-1440  [Culex quinquefasciatus]
MIGGSMETDDSVTCCVCSEEENDLTAVITCMYCFSSSHLKCRGITNKSAHRMREKPYFCSTKCADIYQKITEMQRNDKSL
ISSISSQLNATVTKVVETQMKQVKAEVKSVTTAVESSQNFLSEKFDKIVSDFNEMKSDNTRLNLEVDLLKRSHSDLAGTV
YKLESSVDKSNKLAVSHNLIVLGLPSSANENIMNIVNKTFACIGVDVASVSFTASRLYSEPKNSNIVVPIRVIFDEVTMK
DYVLDKKREFGQLKSNVINRTLLLNGNATNIAIREEMTPLGLELLKEMRDNQKSLNIKFVWPGRGGVVLVKKTDDSPTEK
IANRDDLNRLIARYKNINRPCSDSSSXGQEQQEGKKRKVKK
>Crack-3_HM_gag#LINE/L2 192-971  [Hydra magnipapillata]
MAVTLKEIKKMMKEMLNDFKKETLVLLKNQEKTVIDIISANTKILNERLDKFEKNITQNANKIKKIEIELEDIKESLNFN
EHVIDKKIESNNKHFLNKIDINKQLEKERTNNEFLNEKIRNLEDRSRRNNLRIEGICEDEVESWDKTEEKVHSFFLQKLG
IKSIEIERAHRTGPKKDGRSRVIVLKLQQYKDKAKILKESARLRGTNIYVNEDFSRETVAIRRKLFAEVKERRLNGENVS
VRYDKIISFKTNILKNVPNK
>Tx1-8_AMi_gag#LINE/L1-Tx1 711-2599 via tfasty with Tx1-3_AMi_gag, 1 frameshift. [Crocodylidae]
MAAPTPGSWHEDVSRDLPLTHGLRVHAPLHVGLEVCVEALAALLGRRTIRYAGRVNTVPMIYLSTPALVDRVCAEGLDIA
GIHYPVTPLETQAVRVVISNVPPHVSDRELARGLEAYGVPTSPFRRLPMGSRDPQLKHVLSFRRQVFMLLKEGPQSLPRS
LSLTRSRVGGFIIYLSVGETTCFKCGGSSHLAAQCPQGQGGWTIAACGSAEDGASTSGARGRPSEAGSSSSQPPSTPIPS
QGTGVSGVKPPSSGGAGATTQAPPPPPPSVAPPALSARAPPGGGADASLCPLPTPREVAGVAGDCGAGASSDDGARASSQ
PPANVVLPEVAGPAGAGQERSGPSPAQGELPTTTKKKKKKERKMKGASQDTPSLSGPSSASAEGPPTREPDPTPAAIPPA
PLRCSHQRGRLGGGEGAAGVPPPSPVPQPPESGGSRDSGECLSSGGLAPGVAGESATPLVTPQPSGSDGEVSEMEIQLSE
SRKRRRERDGLSPPKKTGNALVEPVLDSDDERRLMCLDIEGVDAAVAGELPPGVRPRRSSVGNIHPKLAEPPWVPPDYGG
LLSLLKLTKGQKNVAGRITQWCADPKVFVKAARAAAKLMQQDLGTRQMAYRLEKLAQRVRVEWGLGGSLE
>Tx1-7_CQ_pol#LINE/L1-Tx1 1638-4898  [Culex quinquefasciatus]
MNFTLKIASVNLNSTTTTINQNLLRDFIWNQDIDLVFVQELCYQNFSFIPSHFAIINLNQNGMGTGILLRKSFEFNNVVL
DPNGRISSLVINGINYINIYAFSGTNKKKERDELFLNNLTVHLSKSGIEYSVLAGDFNCILNSSDATGATKNVSAGLKRL
VESLQWKDIFAEMKQNEFTFFRSGVASRLDRIYGPSRFVDLIIEAKTISVPFSDHCAIVLKIKTDSNSFCLKGRGYWKIN
NSLLFDENISHKLSVEYQSICNRSSYFNDKNQWWNSIAKVKFKQFFKGESWAINKYILDRKSYFHGVLNDLHRRRCLGEE
VSKDMFLVKSRLMEIELDRLKHYSNKLNNFSLLQGEVMNIFQVSAQIKKFSTSNNLKLKDGNVITGDCSIMKQIIFDHFS
EQFKKSLDNALDGITDPLEGVTSRLSDEQQRELTRPITVDEMFTVLKLCAHKKSPGPDGLNYEFYLKHFDLIKDDLVVLF
NEYLSGTKKPPRDFTAGIITLIHKGNDKNDLNNYRPISLLNCDYKLFTKIIAMRIKLHLDDLLGCEQSACKSDRSCSDNL
KDIRRIMLRANDSKRFKGALVSIDLQKAFDKVDHTYLWKVLEKFNFPDSLISCIRNLYDSATSKVLFNGFLTNSIKIESS
VRQGCPLSMILFVLYIEPLLRKISDGIAGVLIYDKFIKTIAYADDINIFIRNDEEFDLLIQILNSFESFGKIKMNFNKSV
YLRINRANFGPQMIREVNSFKILGIHFSNSISESINLNYDKVILNVKHTLHLHGVRKLNLVERGWLLNAFILSKFWYLAQ
IFPPYKKHIDIINSLVGQFLWNGFIFKTARDQLYLDYDAGGIRLVNAEFKMKALFIRNILYPGGNVSENYILVYSKQHQL
PLCFRQWIEVARLCKNDSLLDSSKAFYKHFLNQENFIPKVKVDFPQFQWTTIWKNLNFNFIGSDEKSRLFAFLNNLIPNK
EKLMAYNIGRLSNNLCDICNGIDNNGHRIMECPQSRIISNWTKNKVEKISGIKLVNLEDILSFEIDENKKSEIAALWLCI
LAISFNLKCYPGPSLFVFKKEIREMRWNNRLIFNKVFGTHLLRLGM
>Tx1-8_BF_gag#LINE/L1-Tx1 1-498 (fragment)  [Branchiostoma floridae]
TPLPSKAVSNSINALEQYSRRNSLRIRGIPEVDKETGEMCVHKVVTFCRVKLGLDLQPQCIDRAHRVGTRKENASRLMLV
KFVSWQDRNRVFRARSKLKGKRDEHDRPLLVLADLTRENLTIFSAAFTAKKNGRIKDAWVDANCRIMVTLADKTTKSIDS
VEELT
>Tx1-10_Crp#LINE/L1-Tx1 1317-4738 via tfasty with Tx1-2_Crp_pol, 11 frameshifts and 2 stopcodons. [Crocodylidae]
MGPPETLQQTGVCLQESGLPSSKDCALFEKCWPHGPSMWPGSSDNRAAGVAILLKGDRVCPLQHREIIAGRLLQVTLETK
EGIFDLLNVYAPAKKTARCAFLENMAVAMPSGxPVMITGDLNCIQEGNRISGGQRMGLDRSSRLLKQLVCDHSLVDAGKE
AKGPGGNFTRVDPVGQTKSRIDFVLLPKGWKVREGRIHAVCFSDHCLLTVKAEMGGQPKRGRGMWKLNMSLLEDEKIQRE
FRQHYAGWKTLRPRYQNHTEWWASMKERTRDFFQQAGRRxAWFQRRQHEHLNCKLQSLHKQAAWGWDVREAMREVKTQIG
AWYREQARKIFLAWAPWVEEGEEWSAYFSRIKKTKKEAMTSLVDGAGVEHRSNEGMLETAAAFYRELYTHDQRTQEAMQD
CLQKLTQVLGEDEGQKLVEEWMLEEINTTLHSFKNGKTPGADGLPKEFYVAFWDQVGLDLLEVYRERLQEGHLGAGMEQG
LITLLYKKGEREDLKNWRPITLLNFDYKLMAKVLAERFKSVIGAVIHEDQSCAVPGRQIHGALMQLRDALQYQWERGQNV
AMLNLDLEKAYDRVSHRFLFETLKKMGVPATFVTWIKTLYTNVSSRVLVNGSLTAPIAVELGVRQGCPLSPILFICVMEP
LAQQLRQDPGISGVEIPGSNREETKVLAYMDDLNIICRDKGSVERVLQHTQVYRAAAGAKLNVSKSTCLVLGKLRDLSAL
GVSVPHEGVKILGVEFDPELTGQRAWEKIEAKAKQRLGLWQLRCLSMGGHVALMKAVLLPVLLYTALVFPPSEQVIHRIQ
RAMCVFFWGSRWEKVARTKLYKAKRSGGRGMPDILLFLWAKYMSQICKLATGAESKTACFVKYFAGHLLRHWRVYTPTNG
AHGPWVTMVLRGPETLPEQIRTAQRGPSDPENHRKMQEVVRARDIMSPMDLLPGDSCQAVWERIFHKDLQKEHRDLNWQV
AHRALPVRARRNREGQRGPPNCPRQTCRWKAETIDHLLWDCPYAREVWKRVMHYLLVVTGFRTLTREAVLYGHLTKQQGT
PTAHFDQFISCFRNALWKARNLLSNRHTDLSVKDCIKMGLSEMYWYYRKTEDDGEEMADVIWKRGDWHRLFRGKPPKRTM
MMTTVRMTMMTTTQVQRVRALEL
>Tx1-10_AMi_pol#LINE/L1-Tx1 1507-5041 via tfasty with Tx1-6_AMi_pol, 2 frameshifts and 2 stopcodons. [Crocodylidae]
SIKITSINVRSLAGxDKWDQVLQTLEQIEADIICLQECGLSSQRSRALLAKCWPHGPATCSGSGDNKAAGVAILLKGDTM
RPLQHKEIVAGRLLQATLETQGTAFELLAVYAPANREARGPFLERVAITMPTGRPVMLVGDFNCVISEEDRVSRVSGTGM
DRSSRQLKQLVRDHGLVDAAKGAQGPRGHFTRVDPAGSTKSRIDFVFLPTGWKAEKARCTPVCFSDHCLLTLRADLGGQL
ERGRGVWKLNTSLLEDERTRHSYREHYAGWRTLRDLYQNQTEWWASMKERTRGFFQRAGKRRALFHRKRHERLTRKLQDL
HRQAAAGRDVREAMREVKAQLGAWYREEARKKIFQARAPWVEEGEEWSAYFSRLKKSKEEVMTCLKDGGGVEHRLKDGML
ATVAAFYRELYAEKPVDPEAMQLCLRSLTRTLGEDEQRQLEEDWMPEELERTLRSFKNGKTPGSDGLPKEFYLTFWDLVG
PDLLELFxERLQEGRLGAGMERGLVTLLYKKGLREELKNWRLITLLNFDYKLLAKVLAERFKSVLGAVIHEDQSCGVPGR
QIHGALVQLRDALQLERERRQSVAVLNLDLEKAYDRVSHRFLFQTLERMGVPLTFVRWIRTLYTEVSSEVQINGFLSARI
AVESGVRQGCPLSPILFICAIEPLAQRLRQDPGIRGVHILGSSNQEAKVLAYMDDLNILCWNRWSVERALGHTQVYEAAA
GAKLNVSKSTCLAVGKLGDLESLGVSVPRKGVRILGIDFDPELSGRTAWEKTEAKVKQRLGLWHMRSLSMGGRVALVKAV
LLPVLLYTALVFPPSERVAHRIQRAVCIFFWGSRWEKVARKTLYKDKRAGGRGMPDILLFLWAKYMSLICKLVTGAESKT
ACLVRYFAGHILRHWGVFTPTNHRPWIMGSPWFYVDPEPVPQLYGLQSAGPVTMSNHKKIQEMVRLRDTTSPVDLLPGDA
CQAVWERIDHKDLRKDHKDLNWLIAHRALPVRDQRHREGQLGRPSCPWPNCHGATETIDHLLWLCTCTKEVWKRVKQLCE
AVTGVSRLTREAALYRHLAKHQGSPSPHFDQFASCVRSTLWKARNLLLYRHTDVEVVGCVKMALSELQTYYQKSVVEDGE
DAAKATWHRDMWHRIFQLPPSGEGGGDSEEEEETSGTEDSDSSSGSSSGSWSDSDVDDR
>Tx1-5_AMi_pol#LINE/L1-Tx1 2117-6082[Crocodylidae]
MAATTFGSLNANGCRDPVKRTALFDFLRQKRLDVAFLQETHTDAANQADWHAAWKGRSFLSHGTSLSAGVAILLSPQLTP
DSEVAQEVVPGRLLTVRIQFAQHRLLLINIYAPTAGRERTAFFETLADFLQSAADGDDLLLLGGDFNCTVDARLDRNGPE
PHPSSARKLWTALEAADLVDVWRHLHADARQYTWLKATAGGLSMARLDRLYVARHHLPLLRGSRITPAGLSDHSLVSCVL
SLPGRTHSRAPYWCLNTSLLQDAHFRDCFAHFWRTWEAARATFPSWKQWWDVGKAQIRVFCQQYTQLATSELRRRVRELE
EDVAQLEVALHDAGGDAGLLESLKLRKKHLRELAESAARGARVRARCQELAETDAPTHFFFSLEKRRAARKVIDHLKTPD
GQTLTDPVEIRCHAVAFYQELFAAEPICLESARRLHDGLPRLCSSEADHLERELSLEELTAAVGDLTSGKAPGIDGLPAE
FYKTFWPLLGPCLLRVFHESLADQTMPTSCRRAVLTLLPKKGDLGCIKNWRPVSLLCADYKILAKALANRLRTVMTSIIG
PEQSYCVPGRTIQDNLFLLRDLLTAADLFGLNIGLVSLDQEKAFDRVGHDYLFRTLEAFGFGPVFTSALRVLYRDISNLL
KVNGTLCAPFPACRGIRQGCPLSGMLYALSIEPLLHALRWRLTGLTLPSASVSAGCPSVRLTAYADDVTVLISTQGDVQS
LVTCQQAYERASSARVNWTKSDTLLLGPWVNPLPPDLPGGLTWRREGLKALGVFLGPSVFSARNWEDLGAEVEARLQRWR
WRLPSLSYRGRVLIVNNLAAATLWHHCAVLDPPPDLLEKLQRLLVDFFWDGRHWLPRAVLYLPVAEGGQGLVDLVGRVAA
FRLQALQRLLYCEDPLPWRQLANLFLHRVGGLGFDRELFLLDPALLDWGVLPPFYRSMARSWRAAFCLLPQARHLRFPQL
LQEPLVHNPALQRSLPSLASSSLVDSLIRSHTIRLGHLLDMTQSDWLSAEALAARLGMRSVRCAAHFLRDVRAILPEDAA
AALEEHLRARRALPAGDVLGEPFPPLPVVPVVDSNLGGGPGTLLALPMSPDSGTGIRFDALPRKALYLWVIRVRHARVLA
TRLDTVWRRHVAAPALTPARPAWRTLYKPPISKKTGDLQWQLLHGILATGTLVCHMDPAASAACPFCPGGVEEDLHHAFL
GCPRLSPLFAALSALLEALGLDFSEATYLFSLPYRAANGGVICLANFLLGQAKMAILKSRRNWLAGAGSDDALRLFQFLV
RARLSLEFEHAVLQQTVPAFQARWAIQGVLCSVEGGHLVLAL
>Tx1-1_PM_gag#LINE/L1-Tx1 890-2476 [Petromyzon marinus]
MATYAKVAAANLPGVTRPPTRASAPRPTPPSAQRPLPLRENGIRRYASSSVTIEAYVEALAAIVPPATITHASKISGKAV
FFLTTKKVADAAVEKGMTVGGLHVQLEPVASVAARIVVSNVPPYIPDKAVLEHVLEHVSKLGTIVVPVRALXLGCRNPAL
NHILSFKRQVHVLLTPGQQEEGSFVIVNAGIAHRLFYAKDCIRCNLCKEEGHFRRDCPKPTTARVGEKSGEEGGRARGAK
QQEPPLQQAPQQPTPDPPATQPPTPEVVAPTSPPQATNRKRKNTEGPGSQGSNSEEEPLPDLEQEEAVKPPTPGEEAEQL
PDAEDAVFAFPDATPSDARAARKKPAKRKKQRASGEGFPQQETVDDEGDIATEIDPSTVVIETHSPPAIHEARQILFAPP
LTKRKKSAERHRAHSPRARTKWMGMRRKVPVPLLTQNQRKRHRAIHPKSLSRSHPRPSLTLGERTPLGHAPAQPLQLFQR
SRTPRKSTQIGTTASAWGARAARGLHSLTLRLPWSPRKISGNSSTRPT
>Tx1-1_HM_pol#LINE/L1-Tx1 805-4332 Previously named L1-6_HM  [Hydra magnipapillata]
MAVKILSLNVNGFNNDQKRNFLMNYFLNFDIIFLQETHCCNTTQLKWVNEWSKKSNGHSIWNNGNNREKGVAILSKKEFK
FSQITNDKKGRILAANITLGKKIFRIINIYGPNDPQEKEKFFKSLNKHAPLSDYYILKGDFNMVEDPSLDREGGDRFNPN
NIIGKKNLKLFTEKYQLTDIFRKQNPNKKVFSYEHQKYKSRIDRIYISNKLSNLNPKCEYKKVGWTDHSSVSCEIPLEKE
NPRGPGYWHLNTSLINDKKFLEMLKCEFEFNQKQNSFENSNQAWEYTKSMVRVIAEQRGREIRKEKREKINILEKALNTE
NSKSDIDDVKIKRIKKELSELNNKNGVFIRTKQVIIEEGEIPSRSLFLLEKHNQNKKTIKTISYENKTVTDTDSIQKVLR
KFYKKLYNKEKLDENMQNRFIDKIQNILKDDENTFLNEKFTVNELYQAALSLEKNKSPGIDGIPVEFWQSTWGIYGEEFT
RLANENFFENTENQIPWTQRTAVISLLPKDGDLSLLQNWRPISLLCADYKIVTKALALRMAKVLQKILEPSQTCSVPGRN
IFSNLFLVRDLIHYTNEKKVGAFLMSLDQEKAFDKMDRNFLIKVLEKFNLGNKFINAIKQTLKNTQSIITNNGYLSKPIQ
IKRGVRQGDPISLMLYCVAVETLALDFKHSQRIEGIQLPGTTPLKILQFADDTTLACKNPQCVDEILSVLIAFEKATGSN
INMTKTKALALGGLQNTQSHLQFENINIKWSNQDGLKVLGITFFTNLQKTADINYDKAVEKFTKILKNFKYRNVSLKCRG
MFVNTLALSKVWYVANIFPINKLHEKKIKKEISIYLWQSNFAEPIKRNILNLKVDKGGLGILDVLRQCIALRLKHLMLFR
QDPNSHESFYLKKYLLAYSLSKYAKKGYPQWNFLTEINFPKSLKELPFYYSDVVELLKTKQNLFKEKTITTKKVYLLLGD
QEDYENLTKTQIFWENTFQTKMPWDKIWWRSFRSYAQGPSQNTKWKILQNILPTKEKCKLWIKNRGRANTNCLACNQNEN
TLHPFIYCKVARAIWNSLRFVYKKILPETNFNTIHVIFYINIENLPKLDPKAKLVTTLTNIITTEMWRARNMRVMEN
>Tx1-1_SP_pol#LINE/L1-Tx1 585-4431 via tfasty with Tx1-12_BF_pol, 1 frameshift. [Strongylocentrotus purpuratus]
MNEGQSNCETVKNKXDNNVHFVTLNVRGIREVMKRKKIFLWLHRQKCDIAFLQETFLSRNIENIVSKEWKGLCLFDHGTN
HSKGVAILVKESLPITVIDKHFKGDGRAIALRFSYQDRMYLCINVYAPAKNTLKEHFYSSLCIWVKKIRKLNDVMIAGGD
WNCVQNKKTRHKWSLICILTKKNFVKFRKNNNLVDVWRKMFPERKQFTWRQLSLNIYSRLDYWLMSKEHFSYIYSIDIKP
VLKCDHNGVSMKLKILAQSRGKGCWKLNNSILKDEVFKENVKRIIRKVNIEFSQFDKQLRWEMCKIKIKEFSTKYTVDVN
TRKKKYIANMESEYDNLCKKIDEGSCAYDIDRMKCLRQKIDKWYEYQCKGAFVRSRARWLEFGEKSTRYFLQLEKAKGKK
KEIDCLESNGKIIKDEQKILTGIREFYCKLYKGNNTEAGFKEYVSDINLNVLNEEDANLCEGKITENECWEALKSMKMNK
SPGSDGLSVEFYKCFWGDIKHMVIDSLNEGYDKQQLSCTQSQAILTLLYKKGNKNVLDNWRPISLLNIDYKLAARILSIR
LQKVIYKLVSQDQAGFLKNRSASECTRLIQDTIDYCLFANKPVVMMFLDFKKAFDTIGHVFLLSLLRELKFKDSFLRWIE
TLYNGAHGRVLNFGWISDKFAIERGVRQGCPLSPLLFIIIAEVLGKRIKQNAKIEGIQVPDFNEDQADFKDIRIVQYADD
TTIITRSVKFVKEIMKEVELFGAHAGPKINWTKSNLMKLNINDDEVEDLHFTEDPIKCLGIYVGKNSFDVQNLNWESKVE
KIKNTLDLWKMRKLTLYGKVVVIKHLVMSQIVHTATAVPIPSKIIKRINKLAYTFLWNSKTEKVKRNICHNPEVEGGLGM
IDLESKCRSLRLSWIHKYLRDEQSAWKILFKYWIKKIGDLPLCLHFNCKKSDMYRICRKKQLPNFYVDMFCSWAELKYID
MFKVTDIENEMIWYNSNIKDMNELLYFPNWMRNNILKVKQVLVNGIWKEVDSICINFQENELLSAFKLAKLKSAFPNFWL
QKLRNRLQYVNSPPSAVESSTIEIVTGDSIDVAVMKAKHYYNLMLEKNRQDLPCIYFWNAYFDLPNEFNWKTVLHYKFYF
INDNRIKQFNFKYLHRILPSKDNLCKWKIKNNNLCDICKIPDTTNHLLLACKKVSLFWKIVSKLIDTLFNFKIFLNEEIL
LIGHEIERREMNLVNLILNFAQFIIYRNYIRECFGSEKHRIHAVYLIKELKVEIRTYLNMKCNQKKFDTNEVTKVTKMFS
LF
>Tx1-2_XT_gag#LINE/L1-Tx1 1-1176  Fragment [Xenopus (silurana) tropicalis]
ITFLKEQDCLNFFEKGKTLLTAPEMEGILIVPSFQMEERPVVVHLFNPFTDVDEIVAFLRRYCSSVRGGVKQYNRFDYFN
GKLKFWVRLQPDPDGIGGVKHPPANFSLGGNRGFLSYPGQPFYCRSCLQFGHTKDDCPNAPRCRNCGEGGHEVGRCPKPR
KCDICAMEGHLCKDCPQKNRRYFSEVVAQRPYVRSPPASVVKEVVPEPTVSQEPAAIVDAAAVPLVVVEPDVVEESIGSV
EPSSPVLSPDAVVMEGESGGDGVMAEESPALRWDLSSDSELSDMETVSSKTKLSAEADGYPSSKKVKFTEGIEHSENQFR
VLMQDSEEDVNPSADIQSFPTTAESLNVSLIPGTVRLSGFLDNEVVKDFVTTVGFTEKSKGKGKEKSGKEK
>Tx1-2_Crp_gag#LINE/L1-Tx1 99-1732 via tfasty with Tx1-4_AMi_gag, 1 frameshift. [Crocodylidae]
MEVAEQKKEAGLLEEAARKRALIXEEYGPASXSSEVLRASAMKSXSGELXDGVAEEEVGXWSTVGRGGKVVSSERKSSDV
AGREGSREGAVPLQEERRSXAESSEXARKXPEPSYCLWEEGDPRRTVKLRVKATLTPEGVKGKTTMLRADFMTRVLFEDL
XVNPKDLSCVVAFDNFRHWNITFWRREAYSAFWARYAEVADKEDLRGLHFETGQKARERVLYFKMYXDDLEXADVRRWLE
GRVEKILDIQRVLDQWQIWTGAWRARVVLDEDPRRPGGVRHLPSVVSIGPHRGYVTYHGQPKLCSRCGLAGHXAAFCSLT
VCYRCGGMGHRAKACKQEXKCTVCGGEGHLQRRCPLSYANKARESHAAEERNKEDPEDAESSNLDMDTFIVEETPEAEQR
DDVIEAADQLSESGGEEQMEEEQSEAAGEGAQESDSASMDLDLPGDKGKEPSPAKRKKKRRVKPKKKRIEEEGGTVRETE
GXALEKDGGKSGELPVEGREVEECGREQSXVGFLSPTAIEHLARATGMRKVGEDTSXPSSGTDDX
>Tx1-12_BF_gag#LINE/L1-Tx1 219-1394  [Branchiostoma floridae]
MATAMTHPSSYAQAAATTGPVTTSREETAGSNVRSGCKPLFFLERDVHEVSQNEPYFSNVEVYKAISRVIDGSKILGIQQ
VRSMWRIYLSEIADRAKLLVSGFNVRNKHVDLRDVHPFRQNEGVRITVKDVPLSVDDSVVAEGLRRYGAKLLGPLRREKL
RVDGRLTNCETGDRFGYMQEPATPADNIPRNVELAGRWRARIFYRDQTNDRNCSKCLGKGHLKRDCTSEWRCSQCNKLGH
KRADCSGVVASTGENSLETGAEVRGAVPASEGYSCEDADTEPERSAAARQSQITDFTVAASKKKNKKDQQRPGGQKSTGS
RVTRSNSRQQPNSRQIQQSRKEAAGVQPSRQVQAPDPRVMELIEAGRHSWSSPPGSDATGSTLTSSSEDDA
>CR1-1_SP_pol#LINE/L2 3-959 [Strongylocentrotus purpuratus]
LFLLYINDLPNCSSELKFILFADDTNILYSTDNYSSINDDLNNKLTNVSYWFNSNRLSLNTEKSNLIYFYNRKSHIHSNI
SKHLKISMNDKIIQRVHTVKFLGVFINESMSWTDHILYITNKVSKSVGIVGKLRTVLPQSILILLYNTFILPYLTYCNTV
WANTYKSKLNSLFXLQKKVVRICSLTSYRAHTRPXLFMNLKFLDVYQLNKYCILILLFKHNQGFLPSSLNNMLSLNNAIH
TYNTRNXNKYHLWVVEKSYLLFSFRHKAPTIWNTLPNNITSIMNYNGFKRSVKQHLITCDLGRILFHFIYNVCVSVFL
>CR1-1_NVi_gag#LINE/L2 406-1518 Fragment. [Nasonia vitripennis] 
SVNCRKKNILLREKLLNKQNESAAASFSYAEVTSFPKLLQKKVPKITVKNVSNKAVDVKKKVIECLVTEKKIQTKNLYVN
RKEELVINCLNSESAMLTESVLKHNLEGICEVRKDTLKNPKIKIVGIDNYSNMEMEDIEDDINMRNFGSFTNKGQVLHMY
KSNFSSLTTVLMEVPADIYKFIKENKSRIFVGYQNCKVYDSININPCYNCGRFGHNGNKCNNSSVCLKCAEKHKTSTCTN
NAIKCLNCVFSNSKYNTKLDVNHAANDTNQCNILKKKISIYIDSTDYPIRPTLPAVHQVYRERDNTTDTHNPTTDNTMKQ
PLQELPKSTKQKHERSEAAKQQQLQQLKMARTPQQQAAPAKNTRLRSSKT
>CR1-1_TCa_pol#LINE/L2 17-2293 Fragment, via tfasty with CR1-17_SP_pol, 2 frameshifts. [Tribolium castaneum] [Tribolium castaneum]
KYFLSYNMYEMVQENTRITARSKTRIDNVFTNMTFNNFKIEVLEPHISDHMGIQLTTSIKNNTNNTDAVKNVRILNVYAC
NRNDINAQWSNFINIFNDKFNECFPLKQIKEKKTRKXYKNDPKVKYYKYYLDLLSVISKCDDKYVILYKYLKXKYDMALR
AARKNYYGQRIQNADNKSKCAWNIVNKICGRSKKCCEIQIEGDPKQIVNDINQYFINSAPFVRSKSNNNTISSNAKTMYX
YPVTSQEIITIIQNLKNKKSAGFDEISNNIIKYCNEEISAPLSFVIQNSLDYGIFPEQLKRAQVLPIYKKGDPTLISNYR
PISLLSSFSKIFETVISSRITNFLMKFQLLNSSQHGYIKGKSVDSAIFSFTNALLDKLEEKKVVLGIFLDFSKAFDCLDH
NILISKLKKYGIRGIMLKLITSYLNNRYQQVTITKNSTVYTSNKLLIKQGVPQGSILGPLFFVIYINDLLNILTVSDNNS
AVNFADDTNILIWGENMTDTMKEAKICMNKVINWTKENKLVLNFEKTYGIHFAICNHKNTEKPNKIVISSKEIELIEKTN
FLGICIDHKLSWTNHIDNLLKKLNSVHFTIRVLKKYINIEQLRIIYFANFQSLLSYGIIFWGQSGKISKVFVAQKQVMRT
MFNLKYNETCRNIFKSNNFLTVTGLYIYRLLLFFFKQNLLFNVTNDHKYDTRKVDLEYPRHKLTLTEKNSYYAGIKLYNS
LPVHLRTPCNLNLFKKKIFDYILDLEPYTLNEFYNRQVF
>CR1-3_SP_pol#LINE/L2  2-598 via tfasty with CR1-1_DR_1220-4303, 2 frameshifts and 1 stopcodon.  [Strongylocentrotus purpuratus]
LGVVLDSSLTMSQQVTSLCKSLHFHLYNIYRVRRMLTDEACHHAIRSLVLSRLDNANSLDxSCNVSDIDRLQRIQNRAAR
IVSNARKYDHVSPFFKQLHWLIPVHKRIMYKVALFVYKSMYNLIPSYISSLFCPIQQSRYSLRSRSDPLLLQIPRINSKK
GQQNITFSGPTIWNSLPLSIRSCSSVGSFKRNLKTYLFSL
>CR1-2_SP_pol#LINE/L2 1-811 1 frameshift [Strongylocentrotus purpuratus]
VSFVSDNNIENLILDFXNELLKINSWLISNKLIVNTXKTHYMIFSNMFIDRDTLVVSLNDNVINRCSSLKFLGVTIDSKL
SWKEHIDVICTNISKGIGILNKIKHFPSNILIMIYNAIISPYFNYCNLAWGSSTDHAMRRLLCLQKRAIRLVLHADYFAH
TKPLFLKLKLLNVLDLCNYSFAIFMYLCFNNFIPISLSSKFCLNSALHSYNTRSSSNFHLNKIRLNITKKSIFFKGPQLW
NNIPQDIKSSPSINVFKRRYKSFLIQQNK
>CR1-1_AG_pol#LINE/L2 1848-4571 [Anopheles genus]
MFRETVEKVQPLLVLISETHVTEKEAFEQFYLKGYRVVSCLSHSRHTGGVAAYARSDVVLKVILNESLEGNWFLGVAVSR
GMTVGNYSILYHSPSASDSRFVDILEEWLDRFLDLSKLNIIVGDFNIDWLNVEKSAKLKSLMDSVNMNQKVNEFTRIARQ
SRTLIDQVYSSIDSIKVTTDPLLKISDHETLVLNINDERCKTIQRKVKCWNRYSKHALCNNVSQGLQCGASDFDEAADLL
WNTLKHAMSTLVEEKTIVSRETSRWYTLDLARAKRKRDKVYKKFIRTNRDNDWSEYTKLRNSYSRDLKNRRSDFFSNEIN
KHKKNSKELWKVLKSMLQPDESCVSVVKFNGVIEADDSIICNKFNSFFVNSVLDINQNIASVSEPSYYVDSATPRCHFRF
QKITLEQLKTICFNLTKTAGIGNVSSTTIQDCYHVIGEDLLMVINQSLERGCFPKSWKESLIIPIPKVNGAANAEDFRPI
NMLHVLEKVLETVVKEQLVQFLNRNELLIREQSGYRQGHSCETALNLVLARWRVLMDRRESIVAVFLDLKRAFETISRPL
LLSTLRRFGIVGRELSWFESYLKERTQRTLFGSSVSEPIENTLGVPQGSVLGPILFIMYINDMKQVLKACEINLFADDTV
LFISHKEIKQAESLMNIDLNALDGWLKYKKLALNINKTCYMVMSAGVLEEPPSIVINSELIERVRQAKYLGVILDDRLKF
HAHIDWVIAKVAKKCGVISRLAKDLDFFGKVHLYKSLISPHFDFCSSILFLGNKGQIKRLQRLQNRIMRLILGCGRRTPS
AVMLNILQWMSVEQRIVYQTMTFIYKMLKGLLPGYLGESIVRGSDIHRHHTRRANEPRVPNLHSQSARNSLFFKGIQRYN
SLPDEIKNARNLPDFKRKCVIYVEQTV
>Tx1-14_BF_gag#LINE/L1-Tx1 38-907  [Branchiostoma floridae]
MRKQAKRARQSSSDQTSPDKQLGAQMKGPPPTPTKMASGEDPNFDSISPELRPLVHLLSTQSKSLHDEVMAEFKSVREEL
SVQIQSVNTKLGKMASEVDDLRDSVSYQNKEIEDLQQALKVEKRERIRATLLAERYSMKSDIIIRGLVHHQDESPDQVVL
SFLSGHLGMSLVPPFVAVHRLSRPTQNQPNPAMLVRLVSLQHRELILSAWRKLPGDKKKGHAVHEHLPRPLQQARAKLMP
ERDSVIAKAKTDRREARVFIRVPPKETCAILIADGKTLKTVDAVDLVFS
>Tx1-12_BF_pol#LINE/L1-Tx1 1441-5127  [Branchiostoma floridae]
MTSNLSFISLNVRGLRNHSKRTTLYHWLERQKADIFLLQETYYTEDKMDVFERDWNGPQFHCFGDSHSRGVSILCKKKID
MNVTDVIKGNDGRKLLIKLKDLTILNVYVPTEKKEQQTFLTSLRDWINDNNVDNLIAGGDFNMVNNTAMDRNSKQSLAPS
AGEKELIRFKRQLKLVDIWRERHPQVRQFTWRRKNPDLISSRIDFWLIQKSIIDSVVKCDIRCSIKTDHQAIFLKLLLTD
FARGPGVWRFNTSHLSDDCYVNGVKSTLIDVVKEFKDNNVSKQMLWEICKNKIKDFTDKFSRQKAFQLNNDLVRLETQLT
ELDKKIDETLDKDVLDVYAQVKSKVETIYEYKAKGAQVRSREQWIEKGERSNKYFLSLESSRSKQNTITRLKHENKEETN
PFKILDLESAFYENLYCCDNPATDKQIDTFLESVDVPSLSDEDRLLLDDPITKNECFSALKYMKQNKAPGTDGLPAEFYL
KFWKEIGDMVFESLKEGIENKRLSVTQKRALLKLIYKKGDKTDLSNWRPISLLNTDFKILAVVLAKRLQDFLPKLISEDQ
TAYIKSRFIGQNVRLIQDVIYYSNFYNIPAAVVWLDFEKAFDSVNWNFMLRTLDKFGFGPTFTSIVKTMYTDIESCIINA
GWQSAYFKLQRGIRQGCPLSALLFNLVVEILATKIRQTRTVKGINVEINDNMFELKISQVADDTTLTLCGDDSIRNALQI
VDDFSNVAGPTLNRRKCEAMWIGANRGRRDTPFGIDWPNRPIKSLGIYYGLSEEECETLNWEKRIDNFENMLLKWLSRKL
TLYGKVLIIKTLAISQLIYNMSMISTPDWALKRIEKACFSFLWNRKPDKIKRKVLYSNYQEGGLKMVDIYSKRSSLQAVW
VKRLMQSALDDTKERHWHLIPLHFINHFGKDFLLFRFNFCKGGDAPSLRVLPPFYRQVVLTWHELGGGKTDFVRQRQEII
WCNKNYKLNNSTLFFEHWIRSGLIYVNDLCENSEYVASDILLRKLSDKRNWMSEFMQVKRAIGYSWTDENDCTGRETLYG
TCVWFNSSMISLDTLNSRYLYSVSLMENVVRPTAQAYWDSVTPNLDWKAIWESQTCYIRYNKLREFNFKLLHKILPCRYL
LNKWKIRDTSGNVYSPFCDICNKLENYEHMFLECTRLRKFWGRLNNTEDNQSVKNVLLEHNKCNITLLTIAKFSIYISWI
RWKDNPRQLLLDDVHNTFMSLCSLYSAE
>Tx1-15_BF_gag#LINE/L1-Tx1 227-1093  [Branchiostoma floridae]
MGKRHRGSRGSSSEENSPTSRPCPPPKTAKMASPEAALTSLPPDLQKLAQLFFDHTKKQQEDTVAQVQTMGDKLSRKIDA
LDAKMHTLSAELTTVRERVGAVEASAEFHETELQNLRKQLDEERRARAKAVILAERYSRKPDVIIRGIRFHKDEDCKQIL
GDFLTTELHLELKPIVAIHRLSKPTTTRPNPPLLVRFVNFHDRDRVLFEGRKLRGNNKGFAVYEHLPPPLQSARAKLVPE
RDESIKNKGKASIVVPPRSTFAVLFVDGKEKKRIDAVDLLLNSEITLT
>REP_Tth_gag#LINE/L1? (solitary outlier)  gi|34761705|gb|AAQ82022.1| ORF1 [Tetrahymena thermophila]
SAYKNNVEKPQEEQQPVSTPLPSEENGLKLLQEPQTVINKQPRPEAKEVPISSNTSISQRSNSNDSSSINQNHNHQHRHS
SISRQESKPTLQEPKPELPTSIDIGNKIWKLCRFDAGMNGCRNSSQDCKFIHLDLIEQVALSDKKKLANVAIWNWDQAKL
DSKYQPSDKDLLNSWVNSNSNEGNPLFTKYKTMIEEKDPEFVQLTKDLTAEQMELEELQNAFQVKKQRYMSELSSRLRQK
ILSKSRQKAFDKLLSESAQKRAAASEAALSQESSSIEYLPPSQQKYSNRYPMIPHHKDQYLPFENSQYSSLQQQPKSPLR
TSQQQHYYQQNNTQSYQPQHYAHNWNPTYQHQQSNNQRFEPSYKPSYY
>Tx1-16_BF_gag#LINE/L1-Tx1 165-941  [Branchiostoma floridae]
MSTRATRGSTRKRDEPAGHMEGKHGDDLDDVTGASEFEAFVREQFKKLLEGQKELQEEIRALEDNVEKNVQLLEARMEQM
EKKMEASETTQRESAKQIKSITQRLKATEQAVEEFQTKCNKLERFSRRNNVRIIGRKVQKGENCVSTVEKILEDKFGLDH
IKIERAHPDGPRNSDSDGVPQHILFKLNSYADKVSIMKAARRKLQDEPYYFTDDLTVTDLQEKRKWMEKVRHAYKEGKKY
RFYNGYWRDGQGKVVSFD
>L1-52_XT#LINE/L1 696-4784  [Xenopus (silurana) tropicalis]
MPTXXWVGECLEASYKKKTRGVATIFNKTLNYKTLKTYKDKQGRFLLLQIEIANTKYTIANIYAPNDNNQPFFTDLMQRL
DSWEAAHIIFGGDMNVTWDRLLDNSGTAPTQTTDKAKHLKTLCKHIDIYDSFRYMNPTSKDYTFYSGVHKTFSRIDYIFT
SQSLLPHIQKAEIKDIIISDHAPISLHMQNPQPQPRSFNWRFPSYLSHSEDFKQYVKTSLANYIDDNLTHWDNPNLLWAA
AKPVLRGQITAYLAYRRKQFNIKYMTLQQELSQAYIQLKNHNNKETQNKYKEIKNLFDTLLTEKAQLSLDYKRNKYFRWG
NKTGKLLASITKKQNLQPHIHKLQGKQGWITDTKEITEEMTQYFQSFYDLEQDNPTEGIKFLQEAHLTKLTIEERNLLNA
PVTETDIQTTIKKLKSGKSPGPDGLSAEFYKILAPELTPLLLDLYNNTLQGLPLWPEANEARIILLPKKDRDPTNPQSYR
PISLLNQDLKILTKIMADRLQQILPRILSPCQLGFTKGRHSVKATRQILALIYQHNIEKRKHGILVNLDAEKAFDRIFHA
HLLRILKFQHFGHQLLKLFRALYSTPTAFLTINNLNSDRFYIKKGTRQGCPLSPLFFNLALDPLLRHLRQNPLFQGFTTK
HLCHKIVAFADDILLFIGNPKQDIPIILETINRYTTFTGLKINYDKSEAIKLRHTATSDWTHNFPFKKAQHHITYLGVKF
TDHHADTYKLNITQTILDLQHELNKWKTASLTFLGRAYLIKMIYFPMLLYKIQMLPYYLKQKDLKLANKIFREFIWTNKR
PRIAMYKLQQTKTNGGINFPNLYNYNVAALLRHVGDWTYNTNTYSNLELEHTLMEATNLNFLLHLPPNELTTNQKNNPLF
IHTYKAWHTIRHKHKTTKNLSLYLPWTGNTNFPSGLMTNVFAKWKQEGLHCIRDILNKKLSLMTFTEATAKFPFLQTQHF
HFIQATHYAREVLRQLTEQDLTSPMNHIWKGANTHHSTASIHRLIRLNPNDTHKDTSLRKWTDTIPNADEQHILKLHLHA
MRLTPSSQYQIMTLQLLHQSYLTPSRRFKMGQLDNPKCLRCKKDEGSLTHCIWQCPIIQPLWTQIHEYWNQLTKKKFIPD
IEWALFSKIKGGRQITKSDRALAGKLAAATRKAILQEWLSVTPPSINLVKNRLHFLFHMDWLEASTNKTIHTHSFFDTWT
TYILNLPPDVRQLTVDTFKNTIWYDQESLRGTNPLLQAITAPR
>Jockey-N3_CQ_gag#LINE/Jockey 534-1487  [Culex quinquefasciatus]
MSTCDVQPEHKLTRYGTKITCFSSDDFDTVQAHLKKNKVQFYTHGKRSARPHRVVMRGLPNAEPDYVKELLKTEHQLDVL
AVHAIRRKQQLPAIDETPFIVLFPKGHTSLKELSSKVKKVGPVVVRWVAYRNKEPHVTQCKNCLQFGHGTSNCHLKPRCS
SCGGAHSTEKCKAEETEAKKCVNCSGSHEGLDRSCPKRAQFIQSRQQASKPKPPAWKKDKQTPAGAAFTAADFPPLPGAV
PSVGTEEKHPRPAGRSRENTGAGAGATPKEQQGERKLYSESELWAIYREYRVRLRQCKTPEEQIDVIAHLLTHGAGK
>Jockey-N1_CQ_gag#LINE/Jockey 75-1298  [Culex quinquefasciatus]
MPHGKKKRRSSPAGSADLKKLKNAEALPAKPGSLSKDAQNSSGNQFATLPVDVSEKEEFERREKLPPIFVKTSSSDSVRK
WLTGFIKSGALRASIRLCADGLKILLPTRKDYNYVRDFLNNTKIEYYSHDDPGKRPMKQVLRGLYDMDVSVLKEELKTLK
LNVIEVFKMTRHNKDIKYRDQLYLVHLEKGSTTPSELKAVRAIFNIIVTWERYRPVHRDVTQCSNCLQFGHGGRNCFIKS
RCATCGGEHKTQACETINENIEAKCFNCGGDHSTKNRSCPKRAEFVKIRQQATTRHQPNRRKTPPTFTDVDFPALASPGA
GSVRVVPNLQPLPLNQRQKVAENTTPPGFSQQPRENQPASTDEGSSDLFSPQELLNIFIEMTTTLRGCKTRAEQVRTLGG
FILKYSS
>Jockey_Ele5_gag#LINE/Jockey 87-1340  [Aedes aegypti]
MGRKRKVRNGKPADITASTPEQSXTRKKRQVDEISLQETILSRNRYSTGGTAVNDSDLGDFGDVPDEQQQQQQRDPPGKI
PPLMVKSVGLSKLQATMKALNISAMYKLCRIGVKVILNCKEDYQKAKAYLVRSKAEFFSFDMPSEKPFKAVIRGLCDMEP
EAIKMELENRYKLKPLAVFPMNRHDRKRVYRDALYLVHFKKGTVTLGALKAARAVNDVIITWEAYRGANRDVTQCMRCLH
FGHGARNCNVTPRCGVCTQQHETRDCPIEEVVDYKCANCGGNHRATDRTCEKRAEYKRIRMQASSQNQPRRRMKEAPKFS
EENFPPIPSQAGGRPSERQAGTDTPPPGLSYRDRLCQRGTSIFQPQQSNAAPHDNSAPLLTPEQLLPIFHDMWQQMQQCR
TRADQILCLGEFIIRHG
>TAHRE_gag#LINE/Jockey 453-3350 [Drosophila melanogaster]
MSTSDHLFSDDEVHSISSSPEQRNSPFHLEISPMSHESDNSQSNISIINLRKLPLKPTNNISKCSSGTAINIFHSLSHKE
KENMNTNIAQKDPLSIDNTAADTDGAKSSILKGKLPSPPLSSHTYKGKLPPATTHTNISALTHTDASQREKIPTSVICTN
AAAATNTNADLGAKTSDALGNFPSLSHSDHSMENNLSSSTKIGPNTNSPSSHILTNTSQATNISAESRSKFPAPTNTDAR
LKKAITSDKGEIHTQIQTNKSKEHNQENKPFNYLSCYASWSTSNPKPDISKLSLTRKSTNRTGNSGKRSISPHQKNASLC
PSAQGNLNSNLNSNSNPKSSATPTEVNLSAARTLSRPAAKRDLFNSSSRSPEEQPMSFSEVVAGTGPDIIAPSAPAPLTK
TPGKRTNSDLDCSSFKTPNKRLRATPNFETPSLFPPLITPVFKSKAAQSVYEESKARNGPPRQPLPCSNNASARSATAPP
GIAPLPPQNTDVELPPWKIVPQSRRAPPILVNNVREIVPLLEKLNYTAGVSSYSTRATEGNGVRIQAKDMTAYNKIKEVL
TANGFPLFTNQPKSERGFRVIIRHLHHSTPCSWIVEELLKLGFQARFARNMTNPATGGPMRMFEVEIVMAKDSSHGKIIS
LKQLGGQRVDIERKNRTREPVQCYRCQGFRHSKNSCMRPPRCMKCAGGHLSSCCTKPRTTPATCVNCSGEHISAYKGCPA
YKTEKRKLAVNNIDINKIRTIKDANITNYGRQGPPSRNNFPRLPFSSSTSNRTTAESRQDTARARRNNPFRQNRNEARPI
QPRFSSHDFAIQKRLNKWRRNSDNVSKKGTINPKDKPKPRTPNMTSNPAQKHLEMFQEKLRKARCERKEQDPEEKKTNIR
MGDDESPPTTSRAARAFLKPRIIDDNIPTPMDTYSNPQKSPSDFDSKSLTQRVENIEKKIDNLMELLFKCLESTKESTLA
HLMTS
>Jockey_Ele10_pol#LINE/Jockey 1441-4116  [Aedes aegypti]
MASLPCLRVVNWNGRSVHSKSLEFFDFVQRHGIDVAVVTETWLRPNTSFLHPNFSCVRLDRPSSDEGGRGGGVLIAVRKG
LAFKQLNISTKKIEATGITISSAGNDELCIIAAYFPGTRRGSEWSKFRREIRSLVTQNSPYFVIGDLNARHRSWNCAKNN
KAGTILFQEASHSGFNINFPDSPTFIPSGRGHPSTLDIVLSNNLVNMSKPTVHNELSSDHLPVTFEISLSSDPVANTESV
RCYARADWLAFQRLINTKLCPNDPMFSNIRDENGVNAALNFFKDALLDAESVAVPLVTPRPYDVAQIPDETKLLIQLRNR
RRRQWMRTRDPMLKQIVLSLNDRIRGECANARFSKFSXTLATMERGDNKLWRITKALKKTTKYSPPLRSGDTLFACPKEK
AKLLAESFALAHNNQSTSDRDTVEAVERSVEQIDLSPPVADNSWLVRPKEIATIIRNLKPKKAPGHDGIKNMLLKRLPRK
GYVVLAKIFSACLKLCYFPDDWKHAIVVAIPKANKDHSIPSNYRPISLLPTLSKLFERVILTRIEKHLETVRLIPHEQFG
FQKGHSTSHQIVRLVKEVRRNFQQGKSSGLILLDVEKAYDSVWHEAILHKMLLGNFPMSILKIMRSFLKDRSFQVAVNGC
TSDRMSVPFGVPQGSVLSPTLYNIFSADIVKVNGVQYYFFADDTGFLASHRDAGTIIETLQHAQNSIQEYQRKWKVKVNP
TKSQAIFFTRRRSPRHLPQSNVSCNGVDIPWSPNVGYLGITLDQKLKFGCHVTNCLQKCDKLVKMLYPLVKRRSRLDPGT
KILLYKTVLRPTVAYGFPAWYDCAQSHRNKVQVKQNRLLKMTLDLSPFHPTDDVHRLAGVERIDDWFRRLMPKFLDSCSS
SVNPLLQELAA
>Jockey-12_DAn_pol#LINE/Jockey 1900-4611  [Drosophila ananassae]
MQQVGLHIAFWNANGLVQNRLEVEHFIHTQCIDILLISETHFTHKSYLQLHGYDVIHADHPSGRGHGGAAIIIKDSINYS
EIATLKEEWVQCARIAVSTAMGKLTIASAYIPPKQRVSEDQFGLLLGDLGDKFILAGDLNAKHPWWGSRVSNPKGSALFK
CIQRRAYNCHSTGEPTYWPTDPQKLPDLLDFAISYGIHPDSIVCSPNGDLFSDHSAVELHINTPVEKKVTQHRMIRPRTN
IETYTEWLDNALESTQQDLSTGAGIDQAVLNLTQEMHNAAQIATPRAPCNNRKLQRHLHLWSPEVAALLNEKRRLRRVWF
QTRYPNDKTAFNRATKKLKRLLQRLRTCAFEEYLRQVEPGDPQHNLWQLTRHIKRPKQRVAQIRKADGGWCRSDQERADA
FAAHLEEAFKPFGLCSEEDRAETDNVLAQPHTDFSQLEPVSEEEVMEEVSGLNTKKSPGDDGIEALALKYLPPSGIRRLT
SIYNACLEIGHFPTSWKRAEVILIPKPGKPESDLASYRPISLLSIISKILERLFLRRLQFLLDEAELIPDHQFGFRRSHS
TPEQCHRIVAKILDSLEEKKYCCAVFLDVKQAFDRVWHPGLRAKLKRNLPQNHYEFLNSYLTDRKFRVRSGEARSGYRPI
EAGVPQGSVLGPILYTLYTADMPVAAEESLLAATYADDTAFLASATSPEEASACLQRQLGILDPWLRRWNIAVNHDKSVQ
TTFTLRRGDCPGVSLGGTLIPASPTPKYLGMTLDRRLTWRTHLLRKRKQLQDKLRQLYWLIGRRSRLKLRVKLLIYKTIV
KPVWTYGIQLWGTASPSNRKIIQLAQNRALRTLSGAHPYHDNMTIHAQLGVPWVSEEVRRFATRYVDRLDRHPNPQAINL
LDNSTTLRRLKRTHPLDLRLEETD
>Jockey-6_DK_pol#LINE/Jockey 807-3539  [Drosophila kikkawai]
YSPTMSQIGLNIGVWNADGLANKALELELFVQGHNIDIMLVSETHFCSRSFYKLHGYDIHQATHPADRKRGGSAIIIKSC
LQYYQFYSMQSPNLQCVAVKVKTDHGETAIASIYCPPNFQCSADDFEKLFDDLGRNFIVAGDWNAHHRLWGSRNSTTRGR
ALAGIVQRSNVQVLATGGPTHYPHSQRTPTAIDFAVYSGIRPECLTISESFELSSDHIPLIIKLRVAAQKICHRPRILPR
NANLPRFQATVNRLVNLNMXLNSPDDIDDAVEIFIRNIHTAAEASTCGQVPNSSNPPQALLKPEVMDLVRLKRSLRRRYM
RSQDPXDKAAYRRAENDLKKLLYETKREYFDEMLLNADPTKSNGFNLWKCTRNIKRQPIRKIPIKKSDDTWCRSDAEISL
AFADELEKRFQPFDLANPEDVEETLAFINAPSPEAAPIQHVSPEEVCLHIRKLHPSKAPGFDGIDSRIAKALPKKGILFL
VLLFNSMLRIHHFPSQWKCAVITMIPKPGKPENLVESYRPISLLPTFSKIFERIFLTRIMGVRSVQEAIPDHQFGFRQHH
GTPEQAHRVVQHILNAFENKQYSSAIFLDVKEAFDRVWHDGLLYKLKSLLPTGQFLLLKSYLHDRSFMVEVRGERASIRM
VRAGVPQGSVLGPVLYTLFTSDLPSPNGPGTLLATYADDTAFLVNSPCRNEASRITQEFLDSYGKWTNRWNISINNRKSQ
HCNFTLNGKILPRVDLHDIAIPQAPQAQYLGLILDKRLTWKQHTTKVAASCRAKLKKLNWMLRPTSKLSLGNKMLLFKSI
VVPSMTYCIQLWGMASDSNVMKVQRVQNRALRLIANAPWYVRNKALASDLHIPSIREQINRHSSRYNERLTAHTNRLAAS
LANTSVRRRLKRRHPADLWTRGRHISRVLKQ
>Jockey-6_DF_pol#LINE/Jockey 2093-4813  [Drosophila ficusphila]
MNTLKILIWNVNGISGKAREVEFFAHNNNIDIILLSEIRLNRGEVVKIFGYSFYPAYKPSRHNQGMGGAAVLVRSSLSHF
PQRIIETKSIQLSSIKVATGLGLVDVSAIYCPPGQRIVERHFTDILSSCGQRYIVGGDWNARHWMWGDTYNSPRGRELVE
SISARGSKILATGSPTRYPYVPSHTATCIDFALYHGIMDSQINICQNWDLESDHIALIVNLLTNGSNITRSPRLITSRTD
LTSFKQILDNSFQLNSALDSRQDIENAVDTLTNNIYMAASASTPLEPDYRPINYGVVLTREAKALIVTKRRLRRRAIRSQ
DPEDRILWYRAAMQLRTLLRRLRSDFFEHKLSSMDYTVDANYSLWKCTKSLKRQPLRQVPVRCPSGELAKNEVEQANAFG
LHLEERFTPYSFASTVQVSETHQTLETPLQMSLPIKPIRIEEISEVIQSLPKNKAPGIDRICNVTLKALPIKAILFIALI
FNAIIRTQVFPKQWKLAAIQMIHKPGKPEADPESYRPISLLSSLSKLWERLIANRIAVIMNRDNILPDHQFGFRRGHGTV
EQVHRLVKHILQAFDDKEYSNAVFIDMQQAFDKVWHVGLLLKIKNLLPAPYYGLLRSYLEEREFKVRVRDRYSDNYRMRA
GVPQGSVLGPLLYSLYTVDIPSPNRHHMIDPSKALIATYADDIAVIYNSRCRREAANGIQEYLKDLSAWCKRWNMRINPQ
KTTNPCFTLKRLVSNTPEIQLEGVSLEQPSQAKYLGITLDKRLTFGPHLKATVKKCNQRIQQLRWLTHRRSTLPLRCKRA
VYAFCILPIWLYGIQIWGIAAKSNYKRLQVLQNRFLRTITDCPWYVRGTTLHRDLNLHTVEEQIGRHTSRYRDRLERHRS
LLARNLLPARPLRRLKRQGFAKTIRNQ
>Jockey-7_DYa_pol#LINE/Jockey 394-3159  [Drosophila yakuba]
RHPVPGLQQVGLHIAFWNANGLVRHRLEVEHFMLTNAIDIILISETHFTDRSYIRLRGYDFIHANHPSGRGHGGAALLIK
KGIRYSREATXKEDWVQCAKVDVASPLGKVTIASAYIPPKSKVTEGQFNTLLSDMGERFILAGDLNAKHRWWGCRTNNPK
GNALLRCVHTMGIDCHSTGEPTYWPTDLEKHPDILDIALSKGIDRAKITCHPNADLFSDHSAVELFLNLPVQKRAARPRM
FRKSTNLEAYKEWLVEAINPDVDLSSAEQVDASIDKLTNEMHSAAEHATPRATGTPRPPYRDIHLWSTEVADMVAEKRRL
RRVWMHCPRDKRAFNRATKHLKARLLVLRRAAFDSFLSEVEPGDPQHNLWRVTGSIRRPTRRAAVVKKADGTWCRSDLDK
AEAFAGHLEEAFTPILRCTPEEINETLHEEVPPVQIDHHDIDPVTVEEVEAEIRGLKSTKSPGADGLEAAAIKHLPTPCI
QLLANVYNSCLQIGHFPTPWKKAVVILIHKPGKPEAKLASYRPISLLAILSKIFERILLRRVLPXLDEAGLIPDHQFGFR
RSHSTPEQCHRLVSKILDAFERKSYCCAVLLDIKQAFDRVWHPGLLLKIRRHLPHPYYTLLQSYLEGRTFVVRSGEAYSG
TKTINAGVPQGSVLGPILYTIFSADLPVIEDEGLLVATYADDTAFLATARSPDEAAATLQRQLNTIEPWLRKWCITVNEE
KSSQTTFALRRGNCPPVTLNGVEIPSEPHPKYLGMTLDRRLTWKAHIDRKRRQAEDRLRQYQWLLCRRSKLKTRHKTLVY
SSIIKPIWTYGCQLWGTACDSNISSIQKFQNKALRMASGAHPYHTNKAIHEALGIPMVKDEIEKACRRHKDKLTNHPNTL
ATNLLRDSQPRSNRRLQKTHPLDRINEMTPATPPLNPSVQHP
>Jockey-8_DVi_pol#LINE/Jockey 1696-4428  [Drosophila virilis]
MMHSSLSLGLWNARGISGHVEELKHFLTEHNIDVMLITETWLQAGVSIFIPGYKIHKADHPSDRARGGAAVLIKQEIEYS
QNEPVRMEKLQMASIQIATSRGELTIASAYLPPQLSWSAMEFQQLFSGLGRMFLMGGDFNAKNRCWGCFRANARGTCLLD
AVQNLSSEILATGQATHFPFAQSYTPSAIDFFIYNGLHPDGLSIRPEFQLSSDHIPLVVGYDCIPKGKTIKGRLLPPGAN
IAAFRRDLEETLDLNLEILAPEDIEDVYALFLNKVHSATLISAPVSRSEXSRPQVRLPPAIHTLLLIKRRIRRQYCRTGD
PVVDRIYRRVSNRVKKLLQLNRQTETDRFLENVSPDESSSHSLWRLTRRYKQQVTPKFPIRKPDGSWARSPKERADAFAE
DLEDRFKPFNTSSASMNRRVQLTLESPGQLSLPVAPITANEVSDHIAALKTRKAPGEDGIDNITLKALPVRAVLFLVLIF
NAVLRLGHVPSQWKKARICMIHKAGKSPSSLDSYRPISLLPTIGKLFERCLLTRLLSMDRIKEKIPPFQFGFRKSHGTPE
QLNRVVNFILEGFEAKEYVVAAYLDIKQAFDRVWHDGLLCKIKPLLPPQLYLIVQSYLTNRSFSVVXDGVESNMKAIGAG
VPQGSVLGPTLYTLFTYDMPTGSTIEVADPHDLTIATFADDTAVLSRNECVYEATDVLQQYLHKFEMWAKRWNIGINLNK
CANVTYALRRDMCPGVFLRGQLVTHFNSHKYLGVHLDRRLNFNKHITSVSVALKSRIGKLRWLLSSRNALSLKNKVTIYK
SCIAPAWRYGIQIYGIAAKSSLXKIRVLQAKTLRYLSGAPWYMRTSDLEKDLGVPKVGDVINIQAANYIARLRNHPNRLA
RRLLNRRRIGGLRTRRRLRRSHPIDLPDRFI
>Jockey-8_DPer_pol#LINE/Jockey 785-3335  [Drosophila persimilis]
NGSLFMSASLPPANAGGDGNWFDMKRDYQFSSQDEHNRNNIPHISLAPTREDSIQMCTIAAKIKNHQTINIGAIYCPPAH
EWIDTQFKQVFDSLGSRFIVAGDWNAKSQWWGNARSCRRGAALLKCIQENDQSILATGSPTHFPSNRRHMPSAIDFAVYK
GIRHNLIHIETSYDLGSDHNMQIIKLLLRPEYGKKKILLPKNANIRRFQAHLEQRIHLETELHNGDDIDDAVAILEKNIY
IAAELASQTSSNQHTVYGPQNFHLDSQTLKAIKIKRILCKINQKDRCSNPLIARTINQLTNRIRKRIKLQKDKQMNRLLH
DIDPTDRYSMQKLWRLTNTIKRQPIPNLPVRRHVAEGQQAPADPGCKTTEEKAEAFAQHLEARFTPKITAALEDREEINA
VLQENGPDEAAQIIRPVTIQELKSEIKKLKTKKAPGLDSIDNRVIKSLPTSAIEYLLLICNSALQFGHFPKSWKCAKISM
LRKPGKPSDRLESYRPISQLTGFSKILERLILKRLFEEESFAMAIPNHQFGFRSQHSAEQQIGRVTQFILRSYEAQRHCS
AVYMDIQEAFDRVWHQGLLCKVKTIIPDNLYILLTSYLSDRSFKVVCCNNITSSLKHITAGVPQGSVLGPVLYNLYTADM
PQPPRHANSTQMLATYADDAVYLVSALSPKQANENVERLLADALSWSKKWGITISLAKTAHVLHTLSPVQQHTPAPRLAG
QLLAXKSVMPYLGIHMDTKLNFNKHVAAIVTKTRARIKKLDWIIGRNSKLPLPPKVLLYKQLIAPIWQYALPVWGPLTSS
MQMAKLQTIQSKALRAMXNAPRYVSNNALHADLQVATVEEVYNRLCRNCYT
>Vingi-1_AAl_pol#LINE/Jockey 91-3072 [Atelerix albiventris]
MDPSHFQSQQQAALDSLQAVGPARGVLQLNVEELSLSKRVLIGQLAIQHQADVICLQETHIAVDEAARFTISGFNLICYN
LHPKHGRAIYAKSYLADVYHTASSTFYNSNSIGTIQLVNVYKPPSASWDNEVLPSPNHPAIYVGDFNSHHQDWGYSSTRA
DGSILADWASANDLSLLYDPKQPGFFHSARWNKDSSPDLCWISSVNGQAFPAMRQVLKDFPHSHHRPAIIHIGLQLPLIL
CSEKLRWNFRKANWHLFSDLTNKSIPAIPINSIPSEDSYRRFRQAIFKAASQAIPHGRRANYTPCLDAECEQLLKQYDES
GDPDVADHLIASLDAARQARWQQLTESLNFTHSSRKAWKLLHSLGAGSQPSPVSHPPVSPNSVASHLTQVGRAKIDPVWK
REISHEWSSHFRLSCSSPKLSPFTLSELEDALKRVKPGTAAGYDNITPELILNLGPAAKKWLTIFLSHILESESMPKIWR
RAKIIAVLKPKKDPTLAASYRPISLLSMCYKLLERLLLSRISPLTEKFLSPAQAGFRPGRSTCEQVLALSTYIENGFQKN
LKTGAVFVDLTAAYDTVWHRGLLVKISRCLPPWVANTISFLLQNRRFWVHLGDKSSRWRLVSSGLPQGSVLAPMLFNIYI
NDLPETSSRKFIYADDICCATQASKFDILEETLTKDMSLISDYCKKWRLIPSTVKTVSSVFHLHHASASREINVQLDDTR
IRHEAQPVYLGVTLDRTLSFHEHLIKTAAKVGARNNIIARLASSSWGASASTLRSSSLALCYSTAEYCAPVWFCSPHVHL
VDSKLYSSMRIISGTIHSTPVPWLPVLSNIAPPDIRRDAASSKFISHVYARPDLPIYADIFAHPVQRLTSRHPIWSPTPT
LNFSVPDSWKQSWQLAEVKNKHLIADPCKRQPGFDLAHYDWALLNRYRTGHGRCADMFHRWGARDDPNCPCGYRQTMTHI
VNDCHLSRFKGGLETLHQAQPDAINWLRKKGKR
>32489466_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MLECKADLDYFVCNKKNSHRAERCPVLKLPKPTGNLFGFGKTETGFLQIPDFDFKFDTPSPVPTALVSIGGGHLSADNVQ
GELARLVRADWKWEAIPHEQNSYLVTFPSAEELKRMDDVEFRLKNHGVSLSISDWKSSTDVTPAYQLDEVWVHITGVPHK
WRHYLAFWALGCVVGVTQEVDMLTFRQKGIIRVRVALLSRADLPITTDLLFGTMGYPVTFALEEEGFEPAIPLHDDPMDH
DDDGVGDKDDTNNGGDDQIAKCPKKSEASSSSQGQQPISDVSSMQLALTPFGSCRPPPSKLSVVDRKSDSINFGTAGSVA
RPEAIQANPTAAVHGAVGVDVKPLTGDSARAARPALSRDQVVRRDKSPVLEAMMDRVANVKQQPVQSAVLIAASATTRGA
KQRVHTAAADVDQQSAQPAALVAASVAIESIKQPVQAATTTVRVARHQPSTEQLGAVAAGNIQMLSRAAASPPEGAQHVQ
GAISADSKRDQQPERRWSRRSNKEMALGVASADVDSLTKAISRKAEKNLEIPATAQGTSKSPSISSTTNLCSMFNQVGIS
LGTTATAFDLSVNNLRHMHIDRSKVYPKKHNSTLSKEDFSHDEMDPFLTSDNEGDDYDNGLLTHLVKDISEVDLDEVDQS
TELCDLFVSSRKSKPLNKKKGRKAKSVKSKKSNKVS
>31433139_Osa_pol#LINE/L1 gi|31433139|gb|AAP54692.1| [Oryza sativa]
MNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVSSDGMSGGLALFWHESVHVEI
LNKNERFIDAYIRLSPNDPLWHATFVYGEPRVENRHKMWSLLNSIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQMQ
AFRDVLDTCELHDLGISGLPHTYDNRRGGWNNVKVRLDRALADDEWRDLFSQYQVQHLVSPCSNHCPIVLKLHGSVPDQS
WSKKKYKNIGRELEKTRKKLSNLLEAGTDKAAIRQTSDYMNELLYREEMLWLQRSRVNWLKEGDRNTKFFHNRVAWRAKK
NKITKLRDAAGTFHRSKMVMEQMATQYFKDMFTADPNLDHSPVTRLIQPKVTEEMNNRLCSEFSEDEIANALFQIGPLKA
PGTDGFLARFYQRNWGCIKNDIVRAVKEFFHSGIMLEGVNDTAIVLIPKIEQPRDLRDFRPISLCNVIYKVLSKCLVNRL
RPFLDELISKNQSAFVPRRMITDNALLAFECFHFIQRNKNPRSAACAYKLDLSKAYDRVDWRFLEQSMYKWGFSHCWVSW
VMTCISTVCDKGTRCDPFLFLFVADGLSLLLEEKVEQGAISPIRVCHQAPGISHLLFADDTLLFFKADLSQSQAIKEVFG
SYATSTGQLINPTKCSILFGNSLPIASRDAITNCLQIASTEFEDKYLGLPTPGGRMHKGRFQSLRERIWKKILQWGENYL
SSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQA
LLARQAWRLIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDL
SRRPITPKNNCRIKWVADLMLDNGMWDANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHPDKLGNFSVRTAYRLAENWA
KEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKEDTMHALCRCPQAKH
LWLAMKESNDLSLRMDDHLLGPSWLFNRLALLPDHEQPMFLMVLWRIWFVHNEIIHGKPSPSIEASQRFLQSYMKSLLEI
KQHP
>50901338_Osa_pol#LINE/L1 gi|50901338|ref|XP_463102.1| putative reverse transcriptase  (first 300 bp deleted) [Oryza sativa]
MKTISALVEKGGCKAIRLNGKGKGKLNCFILNWNVRGLNSQAKQDNVKLLVDQMKATVVCLQETKMEMVSDSVITQFLGQ
RFVQEFAFLPAIGTRGGILLACNHNFFSISYVILKDHSLTASVTMKSDNTCWSLTVVYGPQAETEKNLFLDELRSLESMV
HPAWLLLGDFNLIYLASGKNNDRLNRRMMQRFKGTIDRLGIKELALNGRRFTWAKDGANPTQTKIDRAFCKPDWDILFGS
AYMAALSSSSSDHAPLFLVGCEQRELNTSFRFEAYWLKFPEFLEVASESWNRPIRGSNPFAKLNLKLKRLARDLKRWSKF
RIGDIRLQHAIANEVIFQLDVAQEERALTDEELLLKSTLKSRVLGLATLVKIRIRQRARLTWLKCGDVNSKFFHLKANSR
KRKNFIPALITPSGIAVTTEQKEAELERYFSQRLGQYVPRSLTLNWSELSLPSLDLSEVEEDFTEEELKEAISNLPPQKA
PGPDSYIGAFFKKAWEVIKSDLLQAINHFSSLNSDRLEDLNSANICLIPKKGEATRVEDFRPISLMHSFAKILAKMLANR
LAPKLHELVSPNQSAFIRKRAIHDNFLYVQNMIKNFSRKKKPMLFIKVDISKASDTVNWPYLLETFAQISGLHTNPGKTE
IYLIACNNLDLGNLLSSFMGNLKTFPCNYLGLPLHTKKLRKIDLQPLLDKMKWVFKRIDRYRRAFLWKGDDPEKVSAGSS
LVNWQQVCKPKDLGGLGILNLEKFARALRLRWLWYNWKEDQKPWANMDLPCDEMDRCLFKAGTKITVGNGIKISFWNDNW
KDGQSPKDIAPAIYRLAKRKSNSLKKELEDNHWLAMLHPITSLVEIEELIQLGGLLQNVNLVAGQTDDISWRWTANGQYS
AKSAYLAQFQGSNALIEFTPLWSAFAEPKHHFFGWLILHQRTLTAENLLRRHWPCDWICSLCNSAFEDAAHLAKECPFTV
TVWTQICIWMNFQLPQHHLQGNLSDWWSSFCTISPRQNRNKVLGALITTWWNVWLERNRRIFQQISKNELQVAILVKENI
DLIEQSRI
>ATLINE1_4_gag#LINE/L1 389-2383  [Arabidopsis]
MSKRIRPSWYRESPPKQPPFAFEPEEEDDVVILPQVDNSALLARLHLSLVGRMFHQGGRSTKALLSFLPKENIWDVEGRV
RGVSLGDARFQFFFESEVDLQKVLNKRPCHFNKWSFALERWEPHVGTSFPNIMTFWVRTEGIPAEFWDEEVLRNFGNSLG
LVRRVDPSKGRILISVTADVPLRFNKNAQLPSGTVVKVKLSYEKLFRWCSYCRRICHELEQCPLLDAEQKAVLSAEESQR
NLRLSLRDGDSSQARLPLQSFPESNRSRSERNHLPLLNGPPSSRPYHSRGVIRREENNLASRSGRNRSHRQPYPASLNQY
PAEHASKLNRPHGAVSHKRPASPVVTRNAGVDDGRKRRFGDSFSKEKSSAPPNKQSSPLLSDSQLTLSDTVLAPSRAKQI
TSSPTYVRERPFRLNLSKKASALEKGKGKVVEHPTPLLGESSVVGSSAKKSLNFEPSEPAPKNLDTPISVTSKSLEPQLE
KRKSWYDMTVEEDEATARSLESGPDTILAAKFSQVVSFASPSVVSPSLSVLPSPAAPEDEWNESLNPLSEALNLDWTEED
EAAYHLADDLDVDADDLLSEELQESLQDQSGLVIPGSHVAPISELQPEKLKSLIVSSLQSEEVGPSIAIPRRKDSKKKVV
PHSRKAQLNSGLCLNLASKKIHHI
>51870005_LDV_pol#LINE/L1 gi|51870005|ref|YP_073558.1| RNA-dependent DNA polymerase [Lymphocystis disease virus - isolate China]
MACKRIDKRWKLDINLLSDKSFIEFIHHDLNEFLIIHNNVSPNLKWETLKAYLRGSIIKFSISKKSTIKQLPIIKAPQLK
LKTGKISIDRDEINDEFKRYYSDFQQQSSIELNYFWTDLLVLSSAKRKFLNAPLNVSEIIKAVKELRRKKSPGPDGFPVE
FYASFIEILAPLLTTVYNYSFKEKKLPETLNQAQIIPILKPGKNPLELSSYRPVSLLNCDYKILAKILASRLEKFLHVFI
SPDQTGYVKNRRAVYNIHRLLEIVYSSEAFESECLILTDAEKAFDFLKRSYLFETLKRFGLGENFIAWVKLIYDKPSACV
WTGDRQSIFFLLKNGIRQGCPLSPLLFIIAMEPLACSIRKNPAIKGIIRKGKETKILLYADDVLIFVSQIETVPLVLKIL
ERFKIVSGYSLSLNKSKIVPLGQAKIKKSISLTISIDDFIYLGVTITKLKKNLFKHNLKTLKQKGDIKFAHVVYVMQSIL
PFI
>22655797_Osa_pol#LINE/L1 gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza sativa]
MTKELMIPQLKEQLREMVELLYEGKLDMRRLNYGVITLIPKVKDANTIKSFRPICLLNVCFKFLTKILTRRLSEIAQKVI
GESQTAFIPGRQNLDGVVILHEVLHELKKEKKSGIIFKLDFEKAYDKVQWSFLFDVLHKKGFSDRWIQWVKMATIGGKMA
VNINGEVKDFFKTYRGVRQGDPLSPLLFNLVADALSEMLNNAKQAVPHLVPGGLTHLQYADDTILFMTNTEENIVTVKFL
LYCYEAMSGLKINYQKSEIMVIGGDEMETQRVADLFNCQAGKMPFTYLGIPISMNKLTNADLDIPPNKIEKRLATWKCGY
LSYGGKAILINSCLSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYHMIKWEALCRPKEFGGLGFIDTRKMNI
ALLCKWIYRLESGKEDPCCVLLRNKYMKDGGGFFQSKAEESSQFWKGLHEVKKWMDLGSSYKVGNGKATNFWSDVWIGET
PLKTQYPNIYRMCADKEKTVSQMCLEGDWYIELRRSLGERDLNEWNDLHNTPREIHLKEERDCIIWKLTKNGFYKAKTLY
QALSFGGVKDKVMQDLWRSSIPLKVKILFWLMLKGRIQAAGQLKKMKWSGSPNCKLCGQTEDVDHLMFRCHISQFMWCCY
RDAFGWDNIPSSREDLLEKLNIQKDGQKSVLLACLAAGTWAIWLMRNDWVFNGKLTSDPSHLPPKLFLFFYSGDNWRRRS
SGAIWTPQGPYCLPVLEGQQAQTPDEDLNDFQLILQGCLFGCSL
>Vingi-3_HR_pol#LINE/Jockey 2-3019 Nearly complete. [Helobdella robusta]
TNSSGQSVSGGTLRWQTTSTSTSISSCSNTSHPQTQSAGQLNLLQLNCNGIKNKQDEISQHLIKHNIHIAAIQESKLTAD
SKEPVFKDYALYRKDRGTGRGGGLIMLIHHSIPYTIKTLPPTSTTESQAITIGANGTDINIINIYIPPQSVCPSGFSASI
SQYLAIPNVVLLGDVNAHDALWYSSLEDSRGESLASEIENSGCGTLNLDTPTRLPSTGKPSSPDISVVSDSLIVNMEWST
MTALSSDHLPIHITLLSTFQQTASPKIKFINFAKANWEGFTSKTEAAFTKTPFPPNPSVAERSFCHILNVASDHNIPAGR
LITHTPGLSKEITALIKKRDDLRANTPTSKDIAILTSEIQTKTDNLKRTRWKDFLGTFNKKTNTKRLWSTIKSLSGKPIQ
YPNNAVSFNNRSTTNIWQMANSFNKQFTAAKRHISNKSNRCTTKAIKKLSLDDHPTFTDFQVATAIKSSKPSKSIGPDNL
TIFHLKHLGPSGISFLTNVFNESIRSCRIPEIYKKAKIIPLLKPGKPVGESKSYRPISLLCPAAKVLEKCLLPIITEHLT
LANHQHGFRPDHSTTTALALMVTDVANGFNQKRPAHRTVLTALDLTKAFDTVNHQILLSDLLSSSLSRSIVRWLSNYLHG
RSASTEFRQHLSKQRIIRSGVPQGSVLSPTLFNYYVAKAPAPPQDIKIISYADDFSIYTTGPDADILTRRLNCYLPKLYD
FFNSRNLEISTSKSTVSLFTSHTSQYNYHPQIKINNQLLPLEHNPKILGLTLDTMLSFSQHHKMAAAKATKRNNILKALS
GTTYGQDKETLLQTYKAIGRSTIEYACPAWSPLTSNSSLNRLQRSQNAALRLVTGCHGITSEQHLHSECQMLTVKQHSEL
LSSQFLLQCYKPSHPCNIITTQPRPHRDMKDTLISRWSSTVVAVLPANINNKSLKAASNTLHSNAAKAAAESYQAPILLN
GWPPPTPKIDKSEKTLSRATRWTLAQLRSGHSILLNSYKNRQWTH
>Vingi-1_HR_pol#LINE/Jockey 2-3187 Nearly complete. [Helobdella robusta]
CPHPSSNSRCLLASAGASRRPTSTSSFNSSARNKPSTSQAVSAGKLNFLQLNCNGMKNKQEEIQQHLINHNIHIAALQES
KLTKGSKNPVFKEYAIYRKDRGIGRGGGLILLIHNSIPYSIKSLPDVPTIESQAITINASDTDINIINIYIPPQSTCPTG
FTASISQFLLIPNVVLLGDVNAHDPLWYSSLEDTRGEALASEIENSGCGTLNLDTPTRLPASGQPSSPDISVASDTLIIN
MEWSTMTSLSSDHLPIHISLQTTIQHINPPKIRFINFAKANWDGFTKESEAGFSNQVFPPNLSAAEKSFRRILQDASDHN
IPSGRRISYTPGLSKEITDLMKRRDDIRATDPTSKDIATTSTIIQHKINKLKQSRWKEFLGTFNRITNTKRLWSTIKALS
GKPTQYPNIAINFNNRSLTNNLQIANSFNKIFTSATKHSSNKLNRITNKAVKKFPLDDYPTLTPNQVTEAIKTSKPSKAT
GPDNLTIFHLKHLGPKGISFLTNIFNESLRTCRIPEIYKKSKIIPLLKPGKPVNDAKSYRPISLLCPAAKVFEKCILPII
SNHLTLASHQHGFRPLHSTTTALTTMVTDIANGLNQKRPAHRTILTALDLTKAFDTVNHRILISDLMSSSLPRSIVRWLS
NYLHGRSASTEFRRQFSKQRTIRSGVPQGSVLSPTLFNYYVSKIPSPPPDVKVISYADDFSIYTTGPNADDLTLRLNCYL
PKLYDFFNSRNLEISTSKSTVTLFTTHTSQYHYHPAIKINNNLLPLEHNPKILGLTLDTMLSFSQHHKETASKASIRNNI
LKALSGTTYGQDKETLLQTYKTIGRSTIEYACPAWASLTSDSSFSRLQRSQNAALRLITGCHVIASERHLHSECQMLTVR
QHSELIASQFLLLCHNPSHPCHHIITQQHPHRNIKTTLLSKWASTTHAVLPTTINSDSLKSALKTLHNNTIKAATETYQS
PLLLLDGWPPPTPKIDPTEESLPRAIRRTLAQLRSGHSILLNSYKNRIDSGHLNICPFCNNHTDDVPHLFSCPQNTTKLQ
PIDLWRNPIAVAVWLRPRLEP
>Vingi-9_AMi_pol#LINE/Jockey 202-3183 via tfasty with Vingi-3_SPur_pol, 3 frameshifts and 2 stopcodons. [Crocodylidae]
ESPSTILQLNIEGSSTAKLSVVSQIAAEHNAAVILLQETHCESPEQTRLQGFSLAAFTLSKTYGLATFVRRDTEWCQVAS
SPDDNIEWLTIKISDTSIVNVYKPPGIPLSSAQLPPIQHPCVVAGDFNSQHTSWGYKNINLDGEFLANWASTNNLYLLFD
SKEPDSFESRRWQTTTNPDLAFSSVNVSCQPTRxVLEKFPRSQHWPSLIVHLSFVAPTNSRPSLRWNFRKARWEKFKTDT
NSVAESLPNPWNTDVNASYTAFCDVILRCAKNSIPRGYRKNYIPGWDDECQQLYESFISAEPEQANNDATELINHLDKVR
KARWEETLESINFSHSSRKAWQKINQLTGKKQSVSKCEVKADAIAAQLVRNGRYVKPDKEFTRQIKKEVKQLWKTHGPNA
HLSGEFSTEEMKAALKLLKTNKSPGPDAIHAEFLRNSGEMMIVWLREFISNCVKCNKIPRIWRKATVIAVLKPNKPKDDA
KSYRPISLLCIPFKLLEHLIYAQVYPIIDPQLPKEQAGFRRRRSTVEQVTLLTQDIEESFEAGEKVGAVLVDLTAAYDTV
WLHGLYYKLLRMIPDKMIVSFIMLMLQNRSFTLKTIDGQESRPRSLKNGVPQGSVLSPLLFNVYIVDLPDTQSKKYGYAD
DLALTKSSKQWEAIESTLTSDMNTLADYFHKWRLQLSLAKTVATAFHLNNNQAKKEIKVKIGDWTLEHCYTVTYLGVKLD
RTLTYRQHLEGVQGKVNSRGALIRCLAGTTWGASFQTLRTSALALAYAPAEYCAPVWGRSTHTKLVDSSLNSVMRTITRC
LMPTPVDCLPVLSGIPLPPAPNIRRQAATLALRPQSPRSGPFFALQPSSRKPENQLPRxSLRTRSPLRPISSSNLQMACH
LQHGPPISWSRKYAAQELRLKNFIPNTSFCPSGWQLPCRAWTTLNHLRTGVGRFKASMHSWGLSNDAGCSCGAQAQMADH
IIYECPYGPPSGAQGLIDIDHSTCCWLSGPHASNI
>9758157_Ath_pol#LINE/L1 gi|9758157|dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like protein  [Arabidopsis thaliana]
MSWNCQGIGNPKTVRRVREILKKLSPDVIFLMETMNQDEVVLKKLDFLKRYNHFLVSPSGQGKGGLALFWKHDVEMAIVS
SCDNFIDARVSFKRISFLATYVYGEPEQSKKGATWEKLKCLADNREEPWFLTGDFNEILDNSEKSEGPPRAEGSFVEFRS
FMSECGLFDLKHLGNSLSWRGVRHTHLVRARLDRAMSNGACLELFSRGRCDYRKFEGSNHRPIITFLRQDKQRKKGLFRY
DRRLKENEEIKDLIAAAWNEDLSDSVEKKLSRCRRAIISWTKETQRNSQKIIEALKVKLEQAMVIPVNDVCLLVQINSEL
SAAYLAEEAFWKQRSRQNWLSLGDQNSGYFHAVTKGRSCLNNLSVRETDLGEKVFEDSQFAEVISTCYQALFTSQLSNPE
EISRIVQESVHPKVIEEENDFLISIPSAMEIKEALFNVHPDKAPGYDGFSASFFQTNWTIVGESIVQEIQGYFLFGQVPA
SIKRTFIRLIPKIQGQKKCVSTVSYSFLVNGVPMGEVIPSRGKSKGLQSSPADFGYETASGQLINKLKSSIFYSRRTTEA
VKTKVKDWLQIEKEGGMGKYLGLREHFGRRKKDLFTSIVDKIKQKAISWSSRFLSGAGKQVMLQSVLTAIPVYAMSCFLL
PLSLCDRIQSTLTRFWWDKTDQQRKMCWVGWDRLAVPKVRGGLGFKNFKAYNVALLAKQSWRVLPHPSCLLARVLLGKYC
QNESFLKALSPTFASHGWRDLLAGRDLLRKQLGWTIGNDKSVLVWQDAWLAHDKRIQPVGPAPLLSKDWKVKDLFLPNSV
DWDEGKIEAAIPFVKDLVLAIRPSRAGGADKRIWLGAKDGLYTTKTGYKATLCDVDSDSSRDPVLSFNWFDEVWNVQCSP
KIRLFLWKAVSGALPVGSQLAIRIPSFDPVCCRCGELETSSHALFNCMFVQRVWRLAPLEGIDLFLVFTDVKLGLSWLKK
KKTLPSVGLGYCALYPWICWTLWITRNQKVFSNILFSELETINKAIQDAKEWQFAQEPNSRFQVRSSMGLRAEVFSLNST
VIHTDAAWSVLTCSAGLGWTLKSPGIPLKKNSALSEHVPSPLVAEALVVHSALWSAHNLGLHDVILKSDCQVLTMAIISQ
FPLSEIHGILQDITSSSSSFSSFSCCHIPRTANVIADSLAKNSSIFVFSKLLINAKVDRQKKYIYIKNIINSYNIGV
>4755191_Ath_pol#LINE/L1 gi|4755191|gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase  [Arabidopsis thaliana]
MVSLESEIQFRLIECTRFISQVLALVEYKNGSDRVNEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWR
GMRYDWFVRQRLDRAMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRGQFRFDNRLRDNDVVNALIQETWTN
AGDASVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTADPPNPTTIGALTATLEHAYKLEEQFWKQRSRVLWL
HSGDRNTGYFHAVTRNRRTQNRLTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLT
RIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYR
PIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVE
WDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLP
GVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEG
GTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRF
WWDTKPDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPS
HGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTLQWDWNKIAVILPNYE
NLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGIASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQ
LVRRHISPSAACHRCGAPESTTHLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSLLKKAIILPPTGVTSAALFPWICG
IYGKLGTMTRAILDALAWQSAQRCLPKTRNVVHPISQLPVLRSGYFCFVDAAWIAQSSLAGSGWVFQSATALEKETATYS
AGCRRLPSALSAEAWAIKSALLHALQLGRTDLMVLSDSKSVVDALTSNISINEIYGLLMEIRALRVSFHSLCFNFISRSA
NAIADATAKLSFCNVDGRGTLSSGYVRLV
>Jockey-1_DYa_pol#LINE/Jockey 1992-4649  [Drosophila yakuba]
MTNLRISMWNANGISRHKLEITQFLNVNHIDAMLLVETHLTGRYNFHIRGYTFYRTDHPDGKAHGGTGILIRERIKHHFH
QRFATNYLQATSIKVISGNGNLCIAAVYCPPRFNISEGQFMDFYNTLGDRFIAAGDYNAKHTHWGSRLVTPKGRQLYNAL
IKVSNKLDYVSPGSPTYWPADPKKIPDLIDFAVTKNIPRNLISAIALPDLSSDHSPLLISLLQSPEIADHPHMLTSHNTN
WMKYRKYVSSHIELTPQLNIEADIDCSTAALEEVLVTAARISTPKRKDGEFKKFKTNRQIEQLVLEKRRLRRAWQTSRSP
CSKQRLTEATRNLNRALKQEAENEQLKYIGKLSPTSTKHPLWRAHPNLSSPIQTVTPIRNSSGCWARSDKDRAESFALHL
RGVFQPNPAANDYVPPQIHLETESTPTTFQPNEITKVIRELKPKKAPGGDLITTKMIMELPYCAIKVICKLFNGIISLGY
YPRKWKKSIIIMIPKPGKDHTIPSSYRPISLLSCLSKLFEKCLLTRIIPYMGAHNIIPAHQFGFREKHGTIEQVNRITSE
IRTAFEHREYCSAIFLDVSQAFDRVWLKGLMHKIKTHLPGYTHKLLESYLYNRAFAVRCNTTISDSYTIEAGVPQGSALG
PTLFVLYTADIPTSDRLTTSTFADDTAILSRSRCPVRATTQLANHLVVVEKWLSDWRIKINEQKCKHITFTLNRQTCPPL
CMNSTQIPQVNEVTYLGIHLDRRLTWRRHIKCKKLHLKLKASSLHWIINSRSPLCLDYKVLLYNSTLKPIWTYGSQLWGN
ASRTNIDIIQRAQSKILRTITGAPWYIRNQNIHRDLGILAVKDEIDKQKASYNEKLSVHPNPLARVLTRVSSRTRLQRTD
LPTQP
>Jockey-1_DGri_pol#LINE/Jockey 2577-5276  [Drosophila grimshawi]
MSQIGLRIGVWNANGLANNANELELFIQRHQIDVMLVCETHYCSRSHYRLPGYDIHLANHPSDRMRGGAAVIIKSSLRHH
ALNSLSLLCAQCAVVKVSSDQGEVVLAAVYCPPRFVWEIEDYKCLFEELGPKFLIAGDWNAQHHLWGAALDTRRGIALAD
CVRDSNLQVLATGGATHYSYGNHRPTAIDFAVYAGIRSDCLGISERIELNSDHIPLIVEYRVAAALNAPKTRLLPRKANI
TRFRQRLEQLVNLNMELSSPADIDDAAELFLRNINVAAEYSMLGQLPCSPPSPAQPLLKPEILDLVRHKRALRRQYMRSR
NPLDLRDFRRAAYELRKLLFVTKSKYFQDMLRNADPNKNHGFNLWKATRCVKRQPLRRIPIMRPDNTWCRSDADIASAFA
DELQSRFTPFALASPSQVQDTEAFLNADLDPVQPITTIAPTEVRLQIRRLKSTKAPGYDGIDGKVAKALPEKGVMFLVLL
FNSMVRIHHFPTPWKCAVIAMIPKPGKPDNLVSSYRPISLLSTFSKIFEKIFLGRLSAVSGFQRAIPDHQFGFRHHHGTP
EQVHRVVQHVLEALENKQYSSAVFLDIQQAFDRVWHDGLLFKLKSLLPSAQYLLLRSYLLGRSFMVEVRGERSNIRPIGA
GVPQGSVLGPALYTLYTADLPIPVARNTLLATYADDTVFLANSTTAWRAAAVTQRFLDGFSSWANRWNICVNGSKSQHCT
FALRNGNCPTVRLNNTVIPQENHVRYLGMFLDRKLTWRKHIHITAAACRSKKTKLNWLLKPSSKLSLSNKLLVYRSIILP
TWTYGIPFWGTAAKSWINQIQVLQNKVLRDISGAPPYVSNRTLHNDFGLLTVSQQINRHTSRYNDRLHNHVNPLACSLGS
NTTRRRLKRLHTSDLWTVGR
>Jockey-1_TCa#LINE/Jockey 329-2746 [Tribolium castaneum]
NSQPSSLFFESLMGANQLIQNSFQVAFWNANGLRAARDELEEFVDRLQLDIVLVCETKLQPQTTDPKIRGFTLHRADRGI
GPGGGTAIFVSNRIKHSVLATPDLRNMEAVGINVATANGPLRLFACYNRPQIPILEEDLQTLFDGNTPTIAAGDFNAKHI
NWGSRRSNRNGNILNGFTDQHLDISVMAPVEPTFYRNSDGXADILDVAIVKNVVHQVRLTAINDLSSDHNPVLMQIGNEA
NDPIVCRYTSVDWRKFTKHLVNNFGTIPPIRSTEEIDEAVQTFETKIRDAITPPPGNXELGPKTGDXITGPHRRSTRADX
XHVEEIEDHVESIATEDPDEPLTPTTPEEVSGVIRKLKKRKASGPDEISNRALKNLPLKVIVELTGILNAMFSFRYFPQR
WKMATVIFIPKPGKDPKFPQNHRPISLLSAVGKVAERLIRSRLLQLTQERHIVPDEQFGFRSNHSTTDQLLRVVEHASIS
IERKQVTGAVFLDVAKAFDAVWHDGLIYKLHQTGIPLAMVQMIRSFLDGRRFQVRINNSVSDPQDLEAGVPQGSVLSPLL
YSIFTHDIPKTDRTTLAIYADDTAILTRSKQPYMATRYLQESVERIENWCRRWLINVNPDKSRALLLARRRVSPDGFVRM
FNADIPWSDQVKYLGVILDKKLSFGPHLDYALAKGKMATGMLRSLVCRRSALSIDNKLLLYKSVIRPTMTYASVAWAFAP
CKTRMHKLQTFQNKFLRQAFNAPWFVRNNQLHREAKMPTMEEFFRETAERAFSKAEAHPNPLVREAVDYDENGPSRCKRP
RMALL
>Jockey-2_DF_gag#LINE/Jockey 480-1973  [Drosophila ficusphila]
MHLTAAPALYSPANLNVNTTHKIANNDIQYRSKYQTNKLQASNIVSATLHNICNNYNNDSSPNNNNYNKLLLQTVLFYNN
NTDNTELNRTSQQSLKRTRDRQSPGQVNEQTNSTKKQRSKNQRATQKTLKEYWLAEPRSNNRFELLAHEQDDEAQSDNGT
DRNLTAQIPQRKPKPPPIYVQNVENIHALTTALNSLPETKFELKALSTNEIKIQPQESIHYTNILKLLKDKETKFYTYRP
KDQRGFKVILRHVHHATEKNEIINELADLGHTVLNIHNIQRNDTKKPLPLFSIELKTQDNNKDIYKISHLLHCKVAFEPP
HQKRIIPQCTNCQKYGHTRNYCTRDPICVKCAGKHQSANCHLQITNSDKSQIKCALCSENHTSNYKGCMVYKALQLKKYP
SLRQKEIPQIQTPPEIATKSTPDLINPKISYAEALQKNKPPTSTHQTFLHNDEPFIPTNNNQQQEDMQELKTLMKQLIAQ
MSSMMNIVTILVSKLDKQ
>Jockey-2_CQ_gag#LINE/Jockey 229-1515  [Culex quinquefasciatus]
MTPPSSRRHRRNSTGGISSISDQLNEHRPLTQPGGSSGGFPTANQFEMLDFDISGDEQEDVNNGGGGEILPAGDGAASGN
AAGKVVKNVPPAPAKVRCPPIFVHGSSVPALNRLMSTTQLGADDYHLRVNKGYIQIRVSTKSHFTSVVSTLKQANVQFYT
HGTSDETPVKIVLSGLPVFPVEDVRRELEDVFLRPTSVRQMGKSKHGDYALYLLQFEKGTVKLQELQQIKALFNVIVRWR
HYSKKKSDVVQCFRCQQYGHGMRNCHLEAKCVKCGERHQTTACALPARADVVVNDDRSQIRCANCNQNHTANYKGCPTRL
KYLQDLKAKKKTSPAGRSNLPKVSAVPAPAPRPPGGDLSQLLGSIANPGVSYSQAVQGQPESSTLFTVEEFMCLASELFT
RLSKCQSKAMQFLALSELIIKFVYNGQP
>Jockey-1_DF_pol#LINE/Jockey 1862-4516  [Drosophila ficusphila]
MTNLRISMWNANGISRHKLEITQFLNVNHIDAMLLVETHLTSRYNFHIRGYTFYRTDHPDGKAHGGTGILIRERIKHHFH
QRFATNYLQATSIKVQSGNDNLCIAAVYCPPRFTISEGQFMDFYNSLGDRFIAAGDYNAKHTHWGSRLVTPKGRQLYNAL
INVRNKLDYVSPGSPTYWPADPRKIPDLIDFAVTKNIPRNLISATALPDLSSDHSPLLITLLQSPEITDYTYRLTSHRTD
WMKYRKYVSSHIELNTQLNIEEDIDCSTAALEEVLVTAARISTPQRHDVQIKKFKTNLQIEQLVLEKRRLRRAWQTSRSP
CSKQRLNEATRKLNRVLKQDAENAQLRYIEKLSPTSAKHPLWRAHPNLSSPAETVSPIRNSSGGWARSDTDRAETFASHL
RGVFQPNPAASPFVLPEIQTESESTIPSFRPNEITKVIRRLKPKKAPGGDQITPKMIIELPNCAIEVICKLFNGIISLGY
YPKKWKKSIIIMIPKPGKDHTIPSSYRPISLLSCLSKLFEKCLLTRILPYMGAHNIIPAHQFGFREKHGTIEQVNRITSE
IRTAFEHREYCSAIFLDVSQAFDRVWLNGLMHKIKTHFPGYTHKLLESYLYNRVFAVRCNTTTSENYKIEAGVPQGSALG
PTLFVLYTADIPTSDRLLTSTFADDTAILSRSRCPVRATSQLANHLTVVEKWLSDWRIKINEQKCKHVTFTLNRQTCPPI
YLNSTQIPQVNEVTYLGVHLDRRLTWRRHIECKKLHLKLKASSLHWIINARSPMCLDYKVLLYNSTLKPIWTYGSQLWGN
ASKTNIDIIQRAQAKILRTITGAPWYIRNENIHRDLGILAVKDEIEKQKASYKEKLSAHPNPLARDLTRVSRRTRLQRND
LPTQP
>Ag-Jock-1_pol#LINE/Jockey 1731-4373 [Anopheles gambiae]
MIKCATWNACSVLPKRLELIDFLNHEKIDLLAVTETHLKHNKTFFLPDHTVVRLDRPDQPKGGVLIAIRRTLAFKVLPLP
NTHYIEAVGIEMLSAEGNFHFYAAYCPRQVSDTSGTSRLLKRDLQLLTRASRRFIVAGDLNARHQEWGNLRANRNGMILR
ELTQASACSVSFPFQPSFQNGNSYSTIDIFISNITDRLDVPSTITALSSDHLPVVMNIVCPGTHATRQQRNYREADWPRF
ERYITENISSAPPLLTIEDINTAITNVESCMKEAVDRFVPLIQVRHKVTELDADTKRLIASKNSLRRTYQRTRNRTYYSL
YRQVAKIVDARMVEVRNRQFSDRLKTLPKHSRPFWRLTKVLKDKRRPIPVLIDGGIPAFTPREKAVKLSVNFAQAHRLSE
SMTSTYESRVADSISSLVSEPIEATNIERISSGELLGTIKYLVGYKAPGADGIFNIMLKHVGHSTVVLLTDVFNRCLELG
YFPHLWKYAKVVPVLKPGKDPSLGSSYRPISLLGALSKLFERTIYTRMMAHCESNNVISEVQFGFRKHRSAAQQLQRVLD
VVDSAKMRGKTTALALLDVEKAFDNVWHDGLIHKLRVQGFPLYIVRLVQSYLSGRSSAVYIGSEKSDPYENNAGVPQGSI
LGPLLYNCYTADVPTLGANASLALYADDTAILYSAKPLRFIRAGLQRGLDSYVNFLKEWKIVVNNTKTQALIFPYKVGMT
ASNIIAKVGSLKMENNIIPWASEARYLGVILDRRLTFKAHVGYIKTKTGHLFRMLYSLLKYNSGLSIENRLAIYGQIVLP
SITYGSIAWGRCSRTNMQTIQVIQNRFLKTIMGLPNRYPTRALHSETGFVPIKDKLSEIIECLKRKCRDSEVDIIRNLFS
S
>Ag-Jock-1_gag#LINE/Jockey 113-1726 Poly-Q collapsed [Anopheles gambiae]
MSKWRTVPYHAGPAVRKKRVKRTPDLLAEMRRRKREEAQPESSTPASKKKGEIKITPATAGDVAVNAAMDGIDVPNTAEE
ENHRKEKIPPIVVSGLNEEEYGSLCDATQSGAIKASFSFASGNTCRINAASRDDHDKVKKLLENYTKEFYSHEFKADKPY
QVVLKGLRFGSAEQVTVMLRDVKLQPSLVREVKIGEGRGLSSKLFVVSFPKGAISLEELQKITHINYTTVKWERFQPKHR
DVLQCLNCLNFGHGAKHCAMSPRCAKCAGNHRSKQCTKEMGDVHTCANCMGDHSPYNRNCPSRKQYLQKRYSTQNAPRRL
VPAPIPTRSSWAEPLPWVGQYRKDSVCTCHGCPHGHQQQNQQLQQxxQQSLQCKYQIASASCSYSIPRKTHRQPAQDKLD
QLRSRLSDEEDEEIKSQFGDIVRLWVEFKRLSKQCPRDQILMKMVEFITANF
>Ag-Outcast-2_gag#LINE/Jockey 180-1445 [Anopheles gambiae]
MGVNDPGGGISLSNYYSGLGVDFQIGSAEEPRRKIKKGTQLRKISEVNESEERFLVIEAEKEDKDLSRANPFLVKKTIDV
IVGENNANITRIRGGKLLVRVNSNKNAEKLKRLKKIGVGENETKIVVKEHPTLNTCKGVIRCPDIEFLTENEIMEGLTED
KVTEVVILKRKVNDKVVNTRTAVITFNTTKVPRKIDFGWYPLKVELYIPKPMRCGTCLKIGHTKKVCRREKVCAKCSENV
HIEECKDLKCVSCGGDHHTLDKQCPVFVDEMEIQKIKTVNKITYGEARKIRRSQCPSIPRIFTNGQTYAQKTKITDNTEN
RSQTESNKKTYSKKIMIQNTTYTENNKNNENITENKTQENTQKENNTTEETVNTNNTEKPIHISETRISMNTPIDVAQLD
LEQILIQNENGELIPLQHEKKQ
>Ingi-3_AC_pol#LINE/Jockey 451-4323 [Aplysia californica]
MMTGSKQDFRCGVSSVESRQADEVPGPLPRRGPPQATGGTSVSSRGARRRDQRNTTTGQSSPESQQRPLKTFQWNCEGIY
NKKDALKDTLIRERIDIVCLQETHLTSAMRFNIRGYQTFRKDRNYAPKGGVLTLVANSIPAKEIRVQDTGESEIIGVELK
LPDRIVTVYNCYAPPDKALTLQVMDIPAEDCLVLGDFNSHSPSWGYRDLDAKGEEIEDWQAFTKLHLLNKPDDPPTFFSR
AWKTTSHPDLSFASNNISRGSTKQVMEQLATSDHKPILITSQVSPPTVSTSTLPRWNYKKADWTKFASLTDVYTTKIHAK
TSNTNRSAREFTQAILQAAKESIPRGARKDYVPNWSEELRMLNDKVTTAREAVENLPTTENNIQLKKAAAEFKKATNSAV
RKSWHEKTSSLNLHRQGNKLWRIVRSLNGENLNKDAPVILDKDGESNVDKQAANLLIQQYKEVGKLEISPDRIEEVQRKI
HAFESPQEPKDDVMTKPLVMTELDRALLQLKPRQAPGPDKISNDMLMHIGNTAKKKILQIFNSSWKNGKIPKAWKTAIQI
PLLKDGKPKNSAESYRPISLTSCLCKLLERILNYRLCWFLEKNHLLSDNQAGFRKHRSTEDQITYIAQMVEDGFQRKEHT
VAVWIDLEKAFDKVWTEGLILKLQNLNISHNMLKWISQYLSQRRACVKLQGKRSKMETISNGVPQGGVLSATLFLIFLND
ISTTITKKVTAAEYADDIALLCSAESVGTAQVRLQSTLNNMMKWTEEWGQKINKNKTTYTTFSLSPKPRKVNLHLDGNTL
QHESNPTYLGVTFDPRLTWQAQTERCRSKGNRRTALLRKLAGSDWGANHTVLRGAYVGYVRPVLEYGIAAWGTASDSNFH
KVARIQNQNLRIITGAMRSTPIHVMETLTGLEPLNDRRDLKAIVHQEKVKRMPTHPMKDRSSKSQSKRLKRTSFLHMARH
SSSGLEISLEESPTPLDPCQVHPLQTNHPPQIRENLEKLGTKSEVPPPILKSLTLDYLDRNFPSNRWNRVYTDGSATDAV
RNGGGGIYIEWIDGSTESHSIPTGSLSSNYKAETSALETAATILLNHQKSKANTVILTDAKSVLQALQKPQTAQVRQLLS
LLCDLNSQANTTLQWIPGHCGIHGNEKADDLAKEGAKMTQIEDGMDLSESKTLIKTALRNRWKRSHPKHNRHDPYYILNR
ADQVTIFRLRCGHNRLKHHMHTKLKVGETAICECGHDQEDANHILQHCPRYATLRTQTWQNVAPLERKLYGSLSELKRTA
QFVRDIGLTV
>HETA_DSi_gag#LINE/Jockey 144-2963  [Drosophila simulans]
MSSSDHLFSEDEVLSITSSERSSPIHVNISPMSHGSGNSLVNTVNINQKKLPANQKKSPINSSWVAFNFFNSLSLNMKEN
INAKNAQRDPLSITNTAAANVGAKSSISKGKSPSSPPLSSQIHKRNSLPTMTHTNTAALTNTDATQREFKSTTATCTNAA
AATNTDTELRGAKPSDAMGNFPSLPHTDSAEKNLSSSTKIGRNASSPPSYTHTQINKAAETNLESCSKSPALANSKTQPN
KANDIDSGEIAPPLIQINESKQEERPSTTAKAFWSIFNPKPDTSKLSLSKKPTIRSVNTGKRSISPHQRSASLRPXAQGD
LKLKSNNRSMPTVXNLTTARTLSRPAAKRDLFKSPSRSPDEQPMSFSEVVAGTGPIFVAPTVPAPLTKTPAKRTNDDLDC
SSFKTPNKRLCVTTNFKSPSIFPPLTTPVFQSKAAKSVYEESKTRNRLSHQPLPCSTNAPARSATTAPPQNTXAELPPWK
LVPLSCRAPPILVDDVKEIVPLLEKLNYTAGVSSYTTRATEGNGVRIQAKDMTAYHKIKDVLIANGFPLFTNQPKSERGF
RVVIRHLHHSTPCSWIVKELLTLGFSARFVRNMTNPATGGPMRMFEVEIVTAKDGSHDKIISLKQIGGQRVDIERKNRTR
EPVQCYRCQGFRHAKNSCMRPPRCMKCAGDHLSSCCTKPRTTPATCVNCSGEHISAYKGCPVYKAEKQKLAANNIDTNKI
RTIKDATNNFYRRQGPPPRNNTPRLPHSSAILNRSIAEARQEAARKSVLNPFRQNMNDRRPRFSSHDTAIQTRLNKWRRN
TNKIPKKGRTTSKNNAKPRLVSKTSNPAQRHLENYQDMLRKQRSEENDQEPEKGTPNPMQVSNDSPPTTSRAARASFKPR
XIDEATPSPINSNPNLQKGLSDDHTTNLANRVDNLEKKIDILLALIIQGRDNNLDMETSN
>Jockey-2_DF_pol#LINE/Jockey 1973-4629  [Drosophila ficusphila]
LTNNNLIIAVWNANGLSRHILEIKSFLQENQIDIMLISETHATDKTYISILDYNIFFTNHPDNKAHGGTAIIIKNDLKCV
EVECYKAANIQATTISISDQSGQLNISAVYCPPKFNNTKEQYLDYLNSLGNRYLAGGDYNAKNAMWGSRLTNAKGRQLYE
AIKANNSRTISTGEPTYWPXDTKKLPDLIDFCITKNLTHQNIIIKSSLDLSSDHSPILVTIKSTPDLTSNTPSHNHKTNW
NLFREILLDNMDTMASLKTNEELDSAIMHLNDNIIKALWQSTPALIPVITKRTPSHIKDKIKHKRQLRKIWQSTKHPDDK
TKLNRATKDLKQTLQEYNESQIRRQLENLGTTTSTNYSLWKATKKLTKATIHKHPIKTKKNSWARTNKEKADTLAEHFEE
IFTNSMDNQNVELPSHLPKPNCAIRKTTIYEIREQISKVKDKKTPGYDQISGKTLKELPDNTIRLIRDIFNAVIRLKFFP
STWKIAQITAIPKPHKSAALVSSYRPISLLPILSKIFEKILLDRINPILIEQNVIPPHQFGFRKKHSTVQQVHRVINKIS
EDFDNKKVCVAVYMDIAKAFDKVWHTGLLHKLHNILPLNLFTILKSYLTNRYFYIKCDDECSDLMPVAAGVPQGSVLGPI
LYLIYTADIPNPLTHGSMIATFADDTVLMASSYTEKRAANTLQEILTTTMSWFEKWGIEINKDKTQQVVYTKKKITTPTR
IKIDDEILKLSTSAKYLGLTIDSKLTWKKHIINKRNEVKSKFRQLHWLLGRQSNLNVSNKLLIYKTIIRPIWTYGIEIWG
TASKSNLIIIQRAQSKILRIITNSDRYTTNDHIHRELSTQTIPEIIKQSCIIHIQKLLAHQNQSLRDIPRREAQPRRLKG
RTPTALAHQ
>Jockey-5_DAn_pol#LINE/Jockey 2036-4783  [Drosophila ananassae]
MTQLTINIGLWNARGLVRVSEELRLFLSTHNIDILLATETHMRAGQRIYLPGYLIYHAYHPSGNNRGGSAVIIKDSLSHY
PLPPTSSNDRQIARVQLQTSDGNVTVAAIYLPPTETWIQSEFESLLTDFGGKFIAGGDYNAKHAWWGNSRACRRGKQLQE
AIANGRYQVLATGEPTFYSYNPLLTPSALDFFIINGYSMDRLQVRTLHELSSDHTPILATLHSTPVKNPQRPRLLARGAN
INSFKNHLEQLGEINIQIQDPSDIDNAISTFMRFINQAAEIAAPSNHRSTDTSRHPHLPPRIAALLNLKRRVRREFTRTG
DIRIHQIYHRLANCLSKVLAQRKQDSIDRLLESLDTDASSNYSLWRITKRYKXQPTLKSAIRNPSGDWCRTSLEKAEVFA
NNLEQRFKPFDYSPESIRQQVEEFLESPFQMSLPANPVSLTEVKDLVRKLSPKKTPGEDLLDNRTIRLLPDQALQFLVML
FNSVLTIGYFPKVWKSANIHMIPKPGKSLTDVDSYRPISLLPSLGKIMERLILNRLLSDENVTSVIPDFQFGFRLQHGTP
EQLHRVVNFGLEALERKEYAVAAFLDIQQAFDRVWHPGLLYKAKSIFTPQMFQLVKSFLEDRTFHVSVDGYMSSIKPISA
GVPQGSVLGPTLYSIYTSDMPTQTPITEVNENDVLIATYADDTAVLTKSTSILAATFALQEYLDAFHQWAMNWNIRINAD
KCANVTFTNRRSTCPGVNLNGSPIRAFPAYKYLGVTLDKKLTFGRHITCVQNSFKNKVARMAWLLAPRNKLTLGCKVQIY
KSILAPSLFYGLQVYGIAAKTHLNKIRVLQAKTLRRISGAPWFIRTRDIERDLNVPKIGDKLQKLSQKYMQRLNDHPNSL
ANRLGTAAINNADPRTRVRRRLKRFHPQDLPDRILT
>Jockey-4_DK_gag#LINE/Jockey 64-1191  [Drosophila kikkawai]
MXQDMSDADSDIDCSSSPDEFRLSXRSSKPPAICVPNVSDPLTFERALNLAIGSANYYIRTSKFGVTRIYTANSDAFRKT
VTELTTRNCQFWHHQLREDKPYRVVVKGIHANVPSPQIEKAFSDLGFEVLNIYCPKKPDWKSIKVNEDDNEATINFKTRQ
NLFFVNLKQVPNVSKSLKITKLGCYRVTVERAARRKELLQCQRCQLFGHSKDYCVQDPICGKCSGPHMTGSALCTSNVSL
CINCGGDHVSFDKSCPVRLEKMKILKPRPRLPLTSSPVSRKQAHSSPREFISAEALRTNISYADIARSNTIHSRARDAVG
ISTSDQCLNNKFLALDDSIRAINNRMDQLFKLVQETVEANKAFRELVQVLISRIPK
>Jockey-5_DBp_pol#LINE/Jockey 1895-4555  [Drosophila bipectinata]
MAPLRIALWNANGVSQRKLELTQFLINYHIDVMLLAETHLTNKYNFQIRGYLFYNTNHPDGKAHGGTGILIRNRIKHCFH
NSFATNFMQATSIDVQMDSRSLKLAAVYCPPRFTISESQFMEYFNSLSEQFIAAGDFNAKHTHWGSRLVTPKGRQLYNAI
IKASNKLDCVSPGTPTYWPTDPRKLPDLIDFAVTKNIPRNLISANSLPDLSSDHSPVLLHLNLHPVAVDKPFRLTTNKTN
WLKYKKYISSHIELNPRLNDEADINLSTNTLESVLVAAARVSTPQTQKTSYNNRYTNVEIEQLVLAKRRSRREWQSNRSP
SAKQRLKDATERLSAALRHEEERSQKHYIEQLSPMSSKFPLWRAHSSLCAPIESAMPIRTSTGNWARSDEERAVRFAEHL
QNVFQPNTSSNGISLPATSDIDTSTYEPIVFRPHELLKIINELNPKKSPGCDLISPKMIIELPFCAVRAICQLFNAITRH
GHFPERWKKSIIIMIPKPGKDRTIASSYRPISLLTCLSKLFEKCFLAHITPYLRTHNKIPIHQFGFREKHGTIEQVNRIT
SEIRNTFEQREYCTAIFLDVSQAFDRVWLEGLMHKIIEMLPTNTHKLLKSYLYNRKFSVRCNSAMSDDYIIRAGVPQGSV
LGPTLYLIYTADIPTSRNLTTSTFADDTAILSRARCPKQATAQLAIHLVAVEKWLSDWRIKVNEQKCKHVTFTLNRQDCP
PLILNNTVVPIANVVTYLGVHLDRRLTWRSHIEAKRTHLKLKANSLHWLINSRSPLSLDYKVLLYNTVLKPIWMYGSQLW
GNASNSSVDIMQRTQSKILRTITGAPWYVRNENIHRDLHIPLVREEIAQIKTKYYNRLSVHPNHLARALTRVSSSSRLRR
NDLPIQR
>Jockey-6_DF_gag#LINE/Jockey 324-2093  [Drosophila ficusphila]
MFQIAGKTPSEIREEIISLQRPLCSKSASTSTITSMLATASDAEISSVCSSASMDKTNVYYSQRSSGNSSPLPRGGAAIV
SPTLGDNSKISSTPFSDAATKLKLSQSHLSYKRKKQLSYTPYPKKVHKEKLSGSPSASTSKASSSNRFALLDMEVDLDSD
RPVEERSNLSLADAQTDLNDDMETIVSDNEFEQNNSNGKNNPNNNLKPPQIVLSFVNLNDLFDVISGITSLDNVIVKVNQ
GSTARIFSKDSKTYRDIVDHFDEMEIEFHTYQMKEDKPHRIVVKGLHHSTLTSEIVANFKTLGFEALQVHNPRSRSDPDE
KLNIFFINIKPCAKINAIYDIVTLCRQRVRIERMRKRSEIAQCIRCQEFGHTAKYCRRHPNCARCGEDHHTKQCVRPQDQ
PPTCMHCRGNHTASYKGCQSYQEYLRRSMSSKKQSTRQHPQQKRQQQQPIREQQSQQMPNSSASNNIGLSYASIVRNGIG
HAQRRLHDLQAQPQVQNSKNTQQQQYVLDVQSILEQQQQQFMKWQQQLQQQQQQQFFLWLQQQQQEQQKQNKQNSLRLER
LENMVFEMANSIKQWTGGKSVLHNNVSASK
>Jockey-5_DTa_gag#LINE/Jockey 229-1890  [Drosophila takahashii]
MSTARQQQQDERRLSSIRNNAYFCIRADESIVPKKTATLQVNTARARSLSPALLCASGTAPNEPWSXQCPSPDPYDLTSN
ITTTTSTMPVFTTVTSTLTTTTNTTTTTSTAVTQRPASSVLTGKLPFPQQKPTKNANGTLIQTGIDRYVQIKRKLSPQSS
KKTNASKVLKSNTITVPKNTLTNNRFSILSDTDEDNAATQTTTVKKPRPPPIYVRQGNCAELVKKITDLIGANKFYVTSI
KRGNINETKIQANDEQDYRSVAKYLDEGKTNYYTYQLKSSKGLQVVIKGIESTVPTIEIIDGLKEKGFNAKTAINIINRN
KIPQPMFKIELTPENMPLNKNEVHPIYKLQYLLHRRITVEEPHKRNGPIQCTNCQEYDHTRTYCKLRAVCVVCGDAHLTM
DCPLNKENQSAKKCSNCGENHTANYRGCRIYKEMKNRLTQKITAARNPAIRQNLPYIPSTTTPGVSFAQALSYNNGSYAS
VPTPTFKQTTPGLLEQQASNHTSESICVNTSQLPSGIELMLATITKTMGAMQQTLQELVRTQNLLLELLVKQKS
>Jockey-4_DEu_pol#LINE/Jockey 1360-4050  [Drosophila eugracilis]
MQVDLRIAIWNANGLSNHRNEITLFIKTNNIDILLISETHFTDKNYLSIHGFHIINAYHPSGRAQGGSAVIVKNTLKFKT
LDSISTNNMQVAAIQIKCLHSDISVAAVYLPPRYACNLDHFNCLFQGLGSRFISGGDYNAKHPWWGSRLINPKGAELYKC
VTNNNYSTLSTGKPTYWPTDPSKIPDLLDFIVYAGIPQHNLHIEENFDLSSDHSPIIVTYGTTVSYKQKPYRVINGRTNI
RTFKNWLENQTCLNVSLKTGDEIDTAIEDLTNSIHTAGHMFTPPPDYSLDRQTFLPLELRSQISEKRKLRKIWQTTRSPN
DKRKFNKAAKELNTRLWKIKNEATEEYLRNLDPYTADINYSLWKATRYLKRPTRRVTTIEDSQGRRCRCNSEKAEAFAAH
LSSVFKPNLENDPNTVAKVLSFLESPCQMSLPLKPTCFSEVEQEIKKLNKKKSPGYDKICGNTIKNLPPKCTRLLSYIFN
AMLRLEYFPSQWKCAEVIMIPKPNKPERAITSYRPISLLVAFSKVFERILLRRLLPVLEELNIIPEHQFGFRRGHGTIEQ
CHRITQTIINAFECKKYCTGVFLDVKQAFDKVWHEGLLYKIKKWLPAPYFLMIKSYLENRLFYVQEQDESSRICTAYAGV
PQGSVLGPVLYTIFTADLPSSNNTEIATYADDTAIIASSNDLNAASLLIQDELGQIEIWLRKWRIVVNAQKSIQVTFSLR
PGNCPPVTLNGSTIPVSDTVKYLGVHLDRRVTWKQHIKAKQAQLKMKTSKMYWLLGPRSQLSLENKIILYKAVLRPVWTY
AMQLWGTASNSNIEILQRYQNKVLRTITGAPWYMTNFDIHKDLKIPTVKELMTANAEKYINRLHEHENILALGLLDNGDT
RRRLKRFHILDLPHRNM
>Jockey-3_DEl_gag#LINE/Jockey 553-1788  [Drosophila elegans]
MKESLLTQRKNNSFAILSDDEDDTMTIDPITEPELGHGLSEPVQLNFPAVSPSNASSHTKTKKRDPRPPPFLLRGVTDFR
KLIALLSSVTTGFRLKMTGRSSCRITVDDGSVYRVVQKLFKDNGIPVSTFQFKNERAFRVVIKGLHAATEIAEITARLKA
LGHNPRSVYNPPGENGKANRDIFFVELEPARNNKEVYDIRTVDYQVVKVEPQLQRKGPLRCFRCQEFGHSKNFCSLLPKC
ARCAGDHETKDKDKCLATKEEQFKCINCGSNHSASSRRCPAYLEAIEKRRPNTSVDRSPIQKLVLKPALPPAHNAWFTSR
PSVSSSQPLPVRDSRQNVLPPLSQPNLETTQQPAQDRLLEFIDXLRKQQENAAMAQAAAIDKLLVRFDQMMSMMTATLEM
LQSVMLSTHCDD
>Jockey-2_DVi_pol#LINE/Jockey 2260-6084  [Drosophila virilis]
MFNNHIPSTVRQDSSNRRSNGLKIASWNACGLRNKMLEMEAFIYQNNIDIMIIVETHLRGTDEIKIDGYYAYQAHHPSNT
RRGGAAILVKHSLQHIALPLTSAISMQCAATKITLLNGSAINIAAVYCPPLIELEDELFAALRELGNKFIIAGDWNAKSH
WWGNARSCRRGGNLLRYVQQNNCEILATGSSTHFPYNARQSPSAIDFAVYKGLQRELLQISATHDLGSDHLPLLIELLET
PAFNKSRCYLLPLNASVARFQAWLNQHVLLDTEIHSAADIEDATDILERNIRAAAQYATNSHAIQYHQRAQNQCPLSRSL
ELMIKAKRLLKRHFLVNRHPLAKRIHDSLANQVRRTLKEAKERRLNSLLESIDPSDRYNFQKLWRLTNGIKRQPAPNVPV
KKFIQPGSSAEDSNAWCKTTQEKAEAFAQNLEERFKPIITASTADREHISSQLQLPPTHAEMHFRPITDAEVIAEIKALK
RKKSPGLDTIDNRTIKALPLVALQYLSLIYNSILRLGYFPSKWKCAVVIMIPKPGKPQEQLNSYRPISLLSGLSKIFEHL
LLRRMYESDGFIHAIPKHQFGFRSEHGADQQIGRVTQFILEAYERNQYCAATYMDIQEAFDRVWHDGLRYKLRMILPYAT
YNVVSHYLAERTFMVECSGGIRSSTKRIAAGVPQGSVLGPVLYTLYTADMPIPGPISPTTGYVRHMYRKETLLATYADDT
VILTVGRTQTDAVNRMNEYLEVLSAWATKWCITINATKTVHVMHTLRRLQMQTDAQTAHIGGQALLNQTVHTYLGVKLDT
QLQFNRHISAVINKLRTRFKKMQWLIDSTSKLPLKTKVIIYKQLIAPIWQYTLPVWGPLASQTQIDRIQTMQNKILRSIA
GAPWYVRNSTISNDLEVASVDDVYNEACSKYVQRLLNHSNCLAKDLAINPYVPQRLTRERYSRMLQRHMPHVQRQQEQQL
LEAQQRMAEIEAHRPIHGRSVERPLTALQQSILERLSRQRSYQQQRAEQREAERAQRRIERQQREEQHRQEMLREHQESI
QIYAQIYAQREQALQRLEERLQARRLARQAYFAMPPAQQEAVPITSIFIFPANSAAANRSAMGISPTTSTHTNTTTAQAT
NTASAISLSVRHTIDGIPDVQNGEGFTDLVIMVTFRCIQRSNQTTRPEQLPRQWRLIERQLQQRLRIRRYAARSYYLMHT
TRRQRLARLQQFRLQYPAQWRSIWRRLLLRTLDSNLWYLDQRWSTWRLQLIRLQNIFRWLTNRRHGGSSRYLSDR
>Jockey-3_DEu_pol#LINE/Jockey 2171-4891  [Drosophila eugracilis]
MSQIGLNIGVWNADGLTSKALELELFVQSHDIDIMLVSETHFCSRSYYNLHGYDTHQANHPADRKRGGSAIIIKSCLQCY
QSYSLQSPNIQCVSVKVKTVLGEISIASIYCPPNFQCSAEDFEKLFDDLGTNFIIAGDWNAHHRLWGSRSSTPRGRALAE
LVQGSNFQVLATGGPTHYPYSQNSPTAIDFAVYRGIRPESLSITEYFELSSDHIPLIISLRVAALKISRRPQILPRNASV
PRFQAVINRLVNLNMVLNSPEDIDDAVETFARNIHIAAESSTYGQVSKPSNPSQALLKPEIMDLVRLKRSLRRRFMRSQD
PVDKRAYRRTEDELKKLLRITKREFFEEMLLNADPSKPYGFNLWKATRKLKRQPLRKIPIKKTDGTWCKSDSEISLAFAE
ELEQRFQPFNLASSEDVADTRAFLNSPAPDALPIKHISPKEVCLHIQKLRSSKAPGFDGIDSRVAKALPKKGVLFLVLIF
NSMLRIHHFPSQWKCAVITMIPKPGKPENLVGSYRPISLLPTFSKIFERIFLSRIMGVRTIQDAIPDHQFGFRKQHGTPE
QVHRVVHHILNAFENKQYSSAIFLDVKEAFDRVWHDGLLYKLKSLLPTAQFLLLKSYLLGRSFMVEVRGVRSSIRSARAG
VPQGSVLGPVLYTLFTSDLPCPNEPNTLLATYADDTAFLVNSSCRIEASRITQEFLDTYGKWTNRWNIAINGRKSQHCCF
AWRVQSLPEVKLHDDIIPQSSQAQYLGLILDKRLTWRQHTSKIAATCRSKLRKLYWLLKPTSKLSLANKVLLYKSIVVPS
MMYCIQLWGLASDSNVMKIQRVQNRALRMIANAPWYVRNKALEDDLHIPSIREQINRHSSRYNDRLTAHTNHLASSLAHT
TIRRRLKRRHPADLWTRGRQISRVLKQ
>Jockey-3_DYa_pol#LINE/Jockey 732-3991 via tfasty with TAHRE_pol, 1 frameshift [Drosophila yakuba]
MTLNINNTHTINTLKIGYWNSCGVTNKRDELEAYIKKEGVQIMLVTETKLERNSTMLNFEGFHTYLAQNPKTIISQTVRH
TCLNPIETDFIQSAPIALIPSNGIRANMTIVAPIYCPPVYKWTHENFHKLFSHFETLLDGKSNFILSGDCNSKHRCWGNY
SSCARGRSLMQAIMANKLLDVVATGQATHFPFDRRKQPSALDFAICKGLRRRITRTFSSDDLSSDHLPIQIILDLEEANL
QLKKVSNSILKRNTNMEKFKRILEDKMLLNTEIRTGQDIDDCIDIFLNNIKTAANEATPKNRPFTNPRENSRRRENNLSL
DEATTRLLDEKKELNRILRAAGTEEAKKWFKSAQNKLAKEIRKLRTSQINNELQLIDTTDRYRMQKLWKWTNNVKKQPQP
IWPLKKDDDCISMRTASPWTRTLDERAEAFASHLESRFKANLRNSIEDREIIKKELDKFKSLKPRIETGTSGLKPVTLAE
LDLLIKSLESKKAPGADNISNKVISNLPKKARIYLILIYNKILNTGHFPKKWKHACITMILKPGKSPSLLNSYRPISLLS
GLSKIFERIILNRLYNIESFSKAIPNHQFGFRKGHGAEHQLARVTQFILKAYEDKEVCSATFLDITEAFDRVWHDGLLLK
LTKLIPKQLFNVLESYLTGRTFQVRINNETCSRIGTINAGVPQGSILGPVLYSIYTSDMPFPIIKGYIRNISLPDYHPKN
IILATYADDTIIISRSNNTRSAININQTYINKFCRWAKKWDIAINGKKTGHVLFSLKNISENVHTTPIVDGQRAIKLCKH
GYLGVMLDRRLTFGAHLILLKGKIIAAYKRLEWLLGKNSHLPKRTKLLLWKQIISPIWHYAIAIWGSLTSATQTKKIQTL
ENKLIRRIIKANRYTKQSAIREKYKIKSFEEVFDQASKRYANSIADHENPLIKELLTKSFKPIRLAASRTRYVNQYTKYL
LPLLQNIQKPPDEPTYKSLYSYTDKEELEIVSKIRYDYRQTLPTLLQLEDEEMEARDCKAEEERKEREKEERKKALEKGP
PDRWCELLINKFSKMYKKGMITRERVIELMLGQPPTVIKLVIPDYEP
>Jockey-3_DF_gag#LINE/Jockey 280-1704  [Drosophila ficusphila]
MDTATEPVEVPQTMGPNVSEEASSSFSLRQVSNNSKSTSNNTSTTNKKNTKAVNNTAGNNKNVIRPSGSQEQLPSHKPPP
IVVDHCENINGLIRSTDKIVDPSKYSLKCHPNNSVSILASDSDTYRAITKSLTLKKVPYHSWQLKEDRSYRVVIRGVHHS
VPDVDIKESLTSAGHLVRFVNRPRSRFDKTKLVNLVFVELEPAANNKEIHGIKTLCRQRVQVELPYKKDDVVQCHRCQAF
GHTKNHCQKLFNCVRCGLQHGLEACLKDVRPVKCANCGGGHTASYKGCVVYQQVAQRKRVTSQRRTIPQQFTDPNVWSNS
AAPNSYANAVRGLASHPQRQQVPVTLTQSQQFPPLGSDNRKQSQPSHQKVPHRQQQQPSQQQQRPQQQQQPDLQRTLPQQ
QRRNSQQLVNDQQWQRQEQMFLQSNESLSVLVAQIDKLFQMMVSMMSLVSRLLPQNTPGTAQAFPGSFPVNVSQP
>L1-7_Mad_pol#LINE/L1 1653-5807  [Malus x domestica]
MKTIYWNIRGLANRPTRQALRSLVRKHSPDFLCLAEPMTSTMKIRPFFWKSIGMHFLGVNDRGQRLPNIWVFHTANVLSP
TVLSTSSQHITIQFLVAGTAHCITFVYAATTVVERRPLWLSIAQVCAGFSGPSLILGDFNAVLGAHEKMGGILPRRIACE
EFQAMVDTCGLVPIDVKGSPFTWTNGRGISSHIEMLLDRCFCSTAWLDAWPITNCSTLVRHSSDHNPLLVSFQKFAAQGP
TPFRFHRMWLDHPDFINLVKNSWQSIQVYGCPMFILQQKLKLLKPILRHWNADVFGNVNVAVDNAREALEKIQLEISTEG
FTDERHGAELQAHSTLSHALLVQEKFWQDKTRSKWLRDGDRNTSYFHTLAKIRRTRNFISSLRIDSELVEDVEILRNHVV
EHFFNAFHDDGLAIDTGLVTRLIPPLVTTPENDTLLAIPTLEEIKQTVFSMNPDSAPGPDGFGGYFFHACWDFVGFEVSL
AVQDFFKTGYILPNLNSSFVALIPKVQEADSISQFRPIAMANFIFKVITKILADRLALVATRIILPNQYAFLKGRHISDC
ILLASECVNLLDNKCFGGNVAIKFDVAKAFDTLNWDFLDRVLRAFGFHDTFVQWVRVILSSARLSILFNGSPVGFFGCSR
GVRQGDPLSPLLFCLAEEVFSRGLVDLVNSGKVKPISSPRGVTAPSHILYADDIMVFCRGDKRSLMNLMHFIEEYGVNSG
QRISKVKSRIYIGKSASVRRLRILSWLNVSEGELPFTYLGAPIFKGKPKRAYFQALADRIRSRLSQWQGHSLSMAGRVTL
VKSVVVSMLSHTFSVYSWPPTVLNQVRSWTRNFIWTGCADSCGFSIVAWKKCCVPLNEGGLGIRNFSALNKAFLLKKFWD
ILVTSSMASRFFQGRFFNCLGQPCSTYKSSSIWPGLRPLFSDIFHGSKWVIGNGQNINFWHARWLDFPIVDRLGIPPDLC
KAFRAKVSDFIVDGCWIPPPTLHSWLAPIWDDISSIGLPSKYGIDDKMVWLSASNGDLSLSLAYDFKRNKQPVVQWDRWV
WQSCFRPRNSVTLWKYLHGKMLTDDLLQRRGFAIASMCSLCCEGMETASHIFFECSFARQIWSTVLELFRVQYLFQDIFS
FFHYPLQQGFGTQVQLLWWGMIGVGFYSIWHARNAVRFHEEVVSINYVVRSIKCQLLEIDSLNSGCMKNYVEELCILHSI
GVRGRPAKAPKIIEVLWRPPSQSWIKVNTDGAARGSPGVAAFGGIFRDFTGNSLGCFAGSIGLASSLDAELRAVIHAVSL
AWDKGWHSLWIECDSSLVVHLLSSSSPSLTSIPWRLLVSWHNCRVLLSSMQVQISHIFREGNQVADCLANYGVDHPGVHW
WDSCPPCAAAAYSHNLSKLPCYRFC
>L1-7_GM_pol#LINE/L1 2352-6019 via tfasty with L1-3_GM_pol, 9 frameshifts and 1 stopcodon. [Glycine max]
MIILSYNSRGLGRGVKWAAIRRTISKHKVDIACIQETKKESFNKGICQAIWGDSSASWDYVPSIQASGGLLCLWNNSVFE
VDRKVKGSNYLMLEGRWCNINQRMFVVNVYAPCDLAGKRLLWDDLKQLRASNPPGLWCFMGDFNSIRSQDERLSLSQRRA
DPLGISEFNPWISEMELQEIKCVGSSYTWIRPNASVKSRLDRFLVSDQWLLSWPDSSQYTLPRDFSDHCPIIMQTKKVDW
GPKPFRVVDWWLHQKGYQRMVREAWSGDQQAGWGGILLKNKLRKLKLRIKQWSKEYGNISAKEIQKIQQKLNEVEDIAST
RILSEDEIKVRKSLQQQLWDASTAYESLLRQKSRSRWLQEGDSNSAYFHKVINFRRNYNALQGILIDGVWVQQPEEVKTE
AVNFFLKRFSEPEFSRPTLDGVQFPSLAQRQREDLILPFSDQELKEAVWSCGGDKCPGPDGFNFNFIKEFWGVLKPEFRR
FVDEFHVNGCFPRGSNASFLALIPKVNHPQSLNDYRPISLIGCMYKVIAKLLANRLRHVIPVLIDERQTAFIKDRHILHG
ILILNEVVEEACRSKKPAMIFKVDFEKAYDTVSWSFLDYMLHRLGFCLKWRKWISACLHSATISILVNGSPTKEFTPSRG
LRQGDPLAPLLFNIVGEGITGLMREAVRKNLYRSYRVGKKKEPTNILQYADDTVFVGEATWDNVLALKALLRGFEMVSGL
KINYAKSQFGVIGGDVNWTNEAAQTLNCRQLETPFSYLGIPIGAKPSSSVVWEPLIKKCESKLSKWAQKNISMGGKITLI
NSVLNALPIYLLSFFKIPQKVVNRLVALQRNFLWGGDQDHKKIPWVKWEIVCLPKSEGGLGIKDISKFNTALLGKWIWAL
ASDQQQPWARIINSKYGGWADFQSARVQGGHSGWWRDLRKLYHQADQSVFQQCMSWKVGCGDKVSFWKDKWLGEDYTLQQ
KYNQLFLINRQQSDLISMMGNFCSGxWRWDLKWRRNLFDHESDLAVNFMEEISSIHIQRHVKDVMIWKADPSGVYSTKSA
YKCIDNPLYPASDVRTSTLLWKMKIPPKAAVFTWRLLKDRLPTRANLIRRRVIIQDTACPLCGQEQEEVGHLFFNCKRIV
GLWWESMRWIQAKGPLPASPVDHFLQFCDVFGAEINHSSWCGWWVALTSTIWQHRNLLIFQDKPFEPPKVMEDALFLAWS
WLKARQKGFNTSFNHWSSNISDSFG
>L1-7_STu_gag#LINE/L1 8-1767 via tfasty with L1-3_STu_gag, 3 frameshifts and 1 stopcodon. [Solanum tuberosum]
MKQASRGTGGLCRRWGRKVEAYIYRVVQNFNMYGRFVRIEAVLGDRKSSVIIPEIICNGGWADIAEKILGHLRSTSKPPR
VPLARTFREAASPSDWPVHTKNAATEVQNSIKISHAAELDSSKFLSQCLIGIFNDPFHSSPNTDVIQKWFLNRWKIAAGL
KITPLSHNQFLFEIPSRQEAARIMAGEWFWNGRKLTLKWWSPEAGTEIDAPISKFQWVRALGIPLHAWSESTFKVIGNMC
GGFVDTDEDTKRRNHLYWARICVKKSGTVLPNKIKLEVGDRNFEITILIDTHAKFxVVGNSKSSAEDSNATKDGKREASS
LAPLKITDRQVGQHVIFPENSKFWDRVGPSTYKGKIAKANNVNGPLDYHKHGPKRRKHTKTYWKAKGPAQNKYVGIASSS
LIVSNTFDPLANATEKFQSLNQETEISEALEGYTSEQLDADDESEKIRIPRAPRISPQNNQLILASASDSHYSSQNYCDS
SSLSCSDEGNLTPTVIETSKWTKLVMVKACKAFGVNVAGFEHELLDMVLRMEQRRQLQLQQKQAIQGQDNPKRKKKGENE
LKMLLCDLIQHNGDKRVRGRKYKAFSG
>L1-10_DR_pol#LINE/L1 1588-5370 [Danio]
MINNSEIKIGSWNVRGLNNLVKLKQVLGRLKQMKANIIFLQETHLLKDDVSRVTKRWPGQVFNASFTSRARGVMILIHKS
IPFQLKQQYIDPLGRYIILNGTILTSHINLISIYAPNVDDPSFFQNFFFTISAYAGNYVIGGDFNCVLNPINDRSSGVDT
HQQSKKTILKYMTDLNLVEIWRYLNPNKKEYSCFSNTYKTFSRIDYFLISNGLVTKVGKSWYDSILLSDHAPVLFTIQFD
NLVLPPPRFRFQASWLLDHDFVKFLDNKIDLYFLVNTNQTSASVKWEAFKAYIRGEILSYTRYRSKIYQAQLEDLGKQIK
VIERHLFSNFDPSKQKELLVLKAKYNEITSSKISKNLMWLKQSYYDQGEKSGKLLAWRIKKIQTDRAINSIFLENGEKTV
DPLEINNIFKLYYENLYKSEIANNLEGQNNFLDKITFPKLSEETRSNLEKNLSIEELSEALQDMCNGKAPGPDGLPMEIY
KTFAGKILPHLLEMFNESLGKGILPPSLRSALITLILKPGKPPNEKSSYRPISLMSCDTKILCKALSKRIEKFIPNLIMN
DQNGFVLGRQAFHNIRRVLNIVFKKQKAKDHAILSLDAEKAFDRIEWRYLFEVLERFGLGDGYIRWIKLLYNDPQAEIIT
NNQISKPFNLSRGTRQGCPLSPLLLLFAIEPLAMAIRSSPEIKGIIIGEREHRLSLFADDIVVFLSSLELSIQALNALLK
VFGEFSGYKVNNNKSALLLLNKDEQRNYTNNRQFFNSQEELTYLGIKIVTNIKEIISINYDPLLKKVMDSLERWNAMPIS
MIGRINIIKMSILPKFLYLFQSIPLPLPATFFVTLKKMFTRFIWNNKRPRLRLSLLYLPYERGGLKLPNIKLYYWAAQLC
SAMYYFIETDPPAWIDIEKNEITTPLQMYLYSSPVKVLKKYTNNPFLRNSICVWYEAHDFLGETIKLSSLSPIWGNAMFV
PGRNDGGFKNWMYKGAKQVKDLYKDGTMMSFQQLMKEYDIPQKHFFKYLQIRSFIHSEIKTYVEPSLSTIEEHTVKHLRD
KGNLSFFYNTLLEGSKESSMSYLTAWRNDLQEDISKDEWMDSCLFAQTYSVNTRCRLLQYKWLMRTYITPVKLHKFNPNI
PDSCLKCKQDIGTLYHCMWECTEIQTFWKSILVMIGKLTEENVPCDPKLCLFHIYPVNFVVSASKRKLIDFSLLQAKRAI
ALKWKEMQGPSSILWIKEMTNNLAMEKLTYAVKGKLKDFYNIWTPFLCYCNQEDLTGMDD
>L1-9_XT_gag#LINE/L1 691-1617  [Xenopus (silurana) tropicalis]
MGKSTHKVKSDAAARLEQYARNSSQEAASSSPHSPNASPPQTTATELAAEGQTIPTPADLMTAILNCQTTLTSMFTSKVE
ELKVDLSVIKQDMQNIRERTGELEERVGTVEDRTAHLPQDINQIKIQLQAVTDRLDDLENRQRRSNVRILGLPERSEGTQ
PEIFAEKLLKELLGQEIFSPQYVVERAHRVPMRPLPPGAPPRAFLIKLLNYRDRDTALREARKRGDLQYSGAKISLYPDY
STTVQKKRSSYVGIKRRLRDLGLEYAMLYPAKLKIMEGGKAIFFERPEQALEWLEQRPGNARSPPRAQH
>L1-7_CPa_pol#LINE/L1 1-3080 via tfasty with L1-3_CPa_pol, 3 frameshifts and 2 stopcodons. [Carica papaya]
WTMDWSNQRTYLHILHDRFCLSDLLHSLPGLQQKVIPPPLFDHFPICLASDGIRWGPVPFHIDNKWLKMDNFRAMVSKVW
MEAAFxGTASYCLHSKLRHLKTEIKIWIKEVGLKEQTRINDLLDELADLDHSEATWVxILMTGIKETCSKWNCNRMHWEA
ISWKQKAREKWIREGDKNSKFFHCLASHRRRANYVESLVVNNKIITGNEALQEAAKTHFQSLYTENVRNRPKLDHICFDK
IGEPERLLLEAEFTEEEIFSCLKDCDGDKAPGPDGFNMTFFQNFWHEVKSDVLKFFNDFHRHGSFVKPINSTFIVLIAKK
EGANCITDFRPISLIGSVYKLLSKVLAKRFSKSLKSIIGDSQHAFIDGRQITDAIMIANEVVDDLSRNKNSGLLCKLDME
KAFDNVSWEFIDYMLERTGYGIKWRRWIRTCISSTSFAVMVNGGPSSFFTASKGLRQGDPLSPLLFILTMEALNKLLLQA
RTLNLIKGITVGHAGKMEISHLFFADDTLLFCQPDISTLLHLRCILLCFQAVSGLRINLAKSELVGLGPNTDTESLARVL
NCKVSQLPIKYLGVPLGANYKDGASWDPVINIFEKRLAIWKRNFLSKGGRLTLIKSTLANLPTYYLSVLTIPANVANRLE
KIQRNFLWGSEENRRKFHLVKWEDVKLPKNQGGLGLRSLTTMNKALHGKWIWRFWNEGDNLWKRIVDCKWNISGNRPHRR
GGYNTYGKSLWRGISCINNLVLDCSSWAVGRGNKCKFWTDKWCGSSKLQHQFPLIFAIAKDKNMLVENAFDSVNGGGWNI
AVSRNLKDWEIAEYESLLTLLSAIKLTDNEDKLHWNIGNNGIFSVKSFYHYLTPYNRIRSPDFPTKLIWNSTAPPRVSFF
TWEAAKERILTLDNLMKKGIILANRCFLCKADAESCNHLLLHCPFSRQLWSMVLGLLGICWSTAGSIQRELNAWEFLCKR
NKNYRLIPLTIFWILWKERNNRAFEGKEDNFGNIKDKWFHFFGSTLLGHHLCNLDDFGFIVDILLDL
>L1-5_GM_pol#LINE/L1 1148-4501  [Glycine max]
MIISWNLRGLNNVGKLKEISSRLLKLRPTIAILIETRVKNKNAKKIRDKLKLPHNYLDNYKWHDNGRLWIEWDNSKIDVR
HVKCSSQYVHVGVYNLQGEFKFWLTAVYALNQLDRRKVLWKDLEAIHKHQQGPWCVIGDFNNVTKAQDRIGGKAVTESEY
IDLLNMMETTGLAEMDTTGEFYTWTNKQVIGTIYSRIDRVLGNLDWFQDNLDTVLTVLPASVSDHALLCVSRKDPIIKNN
KNFRFSNCLIEMEGYNDMVKASWSRPTRGSPMVRLWNKLKRLQQDMRRFSKPLSNLKQNLIKAREDLQFAQENLRNNNMN
GDSIDRVRQLTEEVINLNELEEKMLMQRAKVDWIRKGDGNNSFFHAIIKSRNNRRNIYMLQKTDGTLLENQSEIEDEIMD
FYKKLMGTEDSQLHHIDIDAMRNGKQVNMEQRRYLVSNITEQDIERALKGIGDDKSPGIDGFGAKFFKASWCIVKEDVIA
AILEFFNTGRLYRGFNNTVVTLIPKGDNARYVKDYRPIAGCTTVYKIIAKIITERLGKILPSIISHSQAAFVPGQNIHNH
ILLAYELLNGYGRKGGTPRVMMQLDLHKAYDMVNWRAMECILKEIGLPMQFVSWIMTGVSTVSYRFNVNGTYSDIMQAKR
GIRQGDPMSPMLFVIIMEYMHRTLVKMQQNPDFNHHSKCEKIGLTNLTFADDVLLFCRGDSKSVSMMMETIRKFSDSTGL
KVNPAKCQMFFGGMDGCSKENLRRITDFAEGKLPVRYLGVPLSCKRLTIQQYMPLIDKIVDRVKHWTSKLLSYAGRIQLV
KSITSAIAMYWMQCFPLPQFVLRKINAICRSFVWTGKQEISKKSLVAWDTMCRNKSQGGVGIINLQVWNIVSLMKCLWNI
CRNSENLWVLWVHTYYLKGNDAITAFVRPNSSWILKNIMXQRDKLGQIQQHWDQALSRQKFPMSAMYHGLTEEHQRVPWR
SVMCGNKARPRAVICLWLACHKKLSTKDRLRRFGMIQSSDCSICNCADESINHLFFNCSGTREIWGNILDWLGRRHDPRE
WDMELAWIIENTKGKGWKSALLKMATAETVYNVWHYRNSMCFGTVVDKQVIERNIIDNIVYRSWQYPTLRSHVAKLMM
>L1-4_STu_pol#LINE/L1 2091-5720  [Solanum tuberosum]
MMQFKLVSWNVRGLNNRDKRRVIKNIMGDWKADIICLQETKLQGDITELVRQIWGDRWVKMACLESSGTRGGIMMLWDSR
IWKGEVLETGTYTLTCKFESQLQDFSCHITGVYAPNCYVERRLVWEEIGSIGGLIEGPWAICGDFNVARYASEKKNCTRR
TLGMREFSDLIEDLNLIDLQLENAKFTWFKGDNHQIASRIDRILVSQEWDDVFSNLKQYTTQRIMSDHSPVTLQGGSWKK
NKSYFKFENWWLRTDGFTDRIREWWDSFDYIGTPDYILASKLKALKHKLKEWNRSEQGSLGQQRKNVLEKLAVVENIATD
RALTEDEATEKATLLLKLEGLIKNEEIYWRQRSRSVWLKEGDKNTKFFHKMANAHKRYNNIDQLLIQGNIVQDPERIQGE
IVEFYQKLYSENVQWRPGNNFLNCPRLTGEEIEDLERNFDEEVLRSLKQCAVDKAPGPDGFTMGFYIKCWEVVKGDIMKT
FQHFYDQGRFERSFNATFIALIPKKKGAKELRDFRPISLIGSIYKILSKVLTERLKRVMSKLVNSQQLAFIKGRQIMDAV
LIANEAIDSRSSLKKPGILCKLDIEKAYDHVNWDFLMGMLEKMGFGLKWRQWIKFCISSVSFSVLINGCPSGFFGSQRGL
RQGDPLSPFLFLLVMEGLNNMIMNANREGWLRGFEVARAGRESLRITHLQYADDTLIFCDAEEDHLKILRLILVLFEGMS
GLHVNWRKSFLYPVNEVPNMGNLKLILGGEVGALPTTYLGMPLGAKSXSLEIWNGVIEKCEMKLARWKSQYLSLVGRLTL
INSVLDALPTYMMSLFPIPPGVINRLDSIRRKFLWQGNKERKGYHLVKWKKVINDKRVGGLGIKNLKNQSNALRMKWLWR
YSNDDQNLWGSVIKAKYEESDNWMTKEVTTPYGVSLWKSIRSLWDEFKQNTKIKVVDGAKTRFWKEDWHEAGNLETLFPD
IHTLVLQQQNTIAELWTPHGWNIIFRRHLNDWEIPRVTEFFSVIEQFSGLETGKDRLQWLGNSTGTFKVSAAYRKLNHPI
MQASKWPWKHIWKAKIPHKVACFVWLLAKEVVLTQENLMKRGITLCSRCFFCGETAETVNHLFIQCKVTGQLWSLFLRRK
NISWVMPGRIAEALYSWEEAGLQAKNRSNWRIIPATIWWTVWKERNLRVFENRESNMQQVKLNCILTLCFWCNQIYSNDT
VSIXDVLDSL
>L1-5_PTr_gag#LINE/L1 11-1927 [Populus trichocarpa]
MDGSEKSCREAIDDSTEEADLLIRSSKKVKIGDINGQSYVEKLMGETSVRHEEDEDNHFNECVSDDDDDDSDEDDCPVIK
LSMEEKKRIRAPWKQTLIIKLMGRKVGYMFFMQRLKNMWNLRGDFTLTDLGNDFYLAKFANTEDREHVLFGGPWMVTDHY
LTVRTWHPNFDPFEATIDKVAVWVRLPDLALEYYDTSVLWKIGNKIGKTLKMDRTTSVGTRGNFARLCVEVDLTKPLLAK
FKLRRRIRRIMYEGLHLICFHCGQYGHKQEICPHIAHESQDEPSEKEMTGDSLGSLVRPEIMDSYGAWMIADRRHRRPSK
KTVVEEKRGNGKGEMIAVNLGKKLKSTTAGSLIVSARYDALNASHEDLAENEAGNSRGSGIKENGTGSIEDKQGDERPLG
HKKQRAIIGPGEQRGEKSQQVKSPNGGLKNGNERAETEMAGTERSAQVKSSNGGLKNGKERAETEKAGTEMSQHVKSSNG
GLKNGNERAETEKAGTEMSPKVKNPKGGLKNVNVTERSKFVAPVLIQPKSVKGKAKVTGLDTETRKRDSSSSKENSSSMA
PREEMVRRGFRTNHEFYRSGTEQFQQTRVQEMEPPDKEILMEEGAEVGEEGEFMVVSQNSEEEMMVDVGDSLMDNTGGR
>L1-7_Cis_gag#LINE/L1 18-1211 [Ciona savignyi]
IKYYTDNIINFTTESGTTVRVTAKFPSPPMEVVSLNPVPCYIDEMKLIKTLEQNKWGKIHKLEFGSHRNFKNIKNGWLSI
HFTKLNTNNIPKVLKFGGKWITVTKPGESHMPLCRFCKERGHVQTKCPKKGYCNFCKTTGHILRFCRSRPTYLPTNPTSS
TPRKPENPPSIEKSSTKSYRAALTGSIATFNRFAALDNMDTETQFGNTIIQTHNTNQFPTLNQISNTQPNLKLNQTPKPQ
RTPRRQSXPQNNSTPIATGTQKTPVHSKKNQQPATTLSTPQSTHSKTNENQKPTTSTKTPKNKPIEQQETLTSESSSGSF
NLEESLLMIDEAHQKYVENETTHYKTTDETPPRNDNNNSDTSDPPELRRTVTSLRKIFVKESPAKKRKLSLELKHLNT
>L1-6_STu_gag#LINE/L1 63-1908 via tfasty with L1-3_STu_gag, 1 frameshift and 2 stopcodons. [Solanum tuberosum]
MGESRIYFAVGFKSYDITKITSRSDTWFEWVERSRKLMGRTTFNRKTMEWIVFALREASRDNGTHTRRWKMNEQFADFFC
SRKHNRFGRFISIVTVQGGNRSVIILPEYALNTGWGDIALKIANFIKDTKGPSLTDKPRMADPKILYADSVRTSKWQSKE
ASEVVINRNKKAISIKDGNTGQEKGLLARCIVGRLNTDLKELPTLSDIRKWAVNTGKKSFGVNIYEMGGCTFLFEFPNRN
MAEHIIHGEWAWRHSKLHLEWWSPTAGCCTNRGTSTWIRAVGLPLHLWTEKIFKAIGDQCGGWLETEEETSLKNHLKWAR
LKIKGDGGTVPKEVKIVDKDLAYFIPIWPEVQPRVVLHEMKKTMDKDHWTIDGKGAKISDLIADKEQAEHVGFRSKLTAG
VGHGTCDKIDKGLDFSVHIGPIPGVKKIRRHRxNEGRPHANRDxSKLHRLNLFRQREWRSECKFIHESQELTRVEEEEDY
VDAVTVIEEEKDSEFDILCSNMQLVNCNEEDFCNCEEAEPLNFQSVEEESDGEMDASLWVHQNIIKLSKEFGVEFEGCKK
EALALFKKIDSRRHSRNIETEQKTGESTKVKGIQELKGLMIDMKFQSKGTRNRGR
>L1-12_GM_pol#LINE/L1 2274-6025 via tfasty with L1-10_GM_pol, 11 frameshifts. [Glycine max]
MFNSWWKWKKEMEKRQLAWEAGEDPMNIISYNVRGLGRGVKWPAIRRMVKEHHIDLLCLQETKKEMLIRLCARLWGNSDF
SWEAYPSANSAGGILCIWNQESFKVESRFVGAGFILLSGKWGQESQPVHVVNIYSPCNLQDKRVLWDSVSQLKNQNPGGY
WCILGDFNNIRTPGERMGSSQRGLVDGSIGEFNNWIEELEVEEAPWVGKRFTWFRPNGTAKSKLDRVLVSPEWLSKWPGS
VQSPLARNFSDHCPVLLRSKSVDWGPKPFKILDCWLSDKSFKKVVPESWSSNPQSGWGGYVLKKKIKALKQKIKVWNKDQ
FEGHFQQFKKIEEELNKLEEESADRQLDDNERVLRKQLQQELWEAAQTHESLLRQKARSRWIKEGDCNSRYFHLLINSRR
RSNCLNGVMVDGVWKDEPAEVKEEVRRFFSQRFQETISDRPTLDGISFKTIDSQQNAMLVERFQEEEIRRAVWSCGSDKS
PGPDGLNFKFIKQFWEIIKPDFLRFFDEFYVNGVFPRGLNASFIALIPKVADPQVLNEYRPISLIGCIYKILAKVLANRL
KKVMHLIINERQSAFIEGRHMLHSVVIANEVVEEAKRCQKPCMVFKVDYEKAYDSVSWEFLIYMMRRMGFGPKWIQWMLG
CLKSASISVLVNGSPSKEFYPQKGLRQGDPLSPLLFNIVAEGLSGLMSKAIDRGLYRGFLVGTNKVEVSLLQYADDTIFL
GEATMENVRAIKAILRAFELASGLKINFAKSSCGAFGVSEQWTYDASNYLNCSLMSFPFTYLGIPIGANPRRCQTWDPII
TKCERKLARWKQRHLSFGGRVTLINSVLTSIPIYFLSFFRVPKQVVNKLVRLQRNFLWGGASDQNKIPWIRWETVCLPKE
QGGLGVKDITSFNTSLLGKWKWELFQNQGETWARVLESKYGGWRSLDGASRASTESLWWRDLKMVNQQPHQGQQLNRSIL
WKVGCGDKFKFWEDRWIGGDNSLAEKYPRLYTISAQQHHFIQQIGAFKEGGWEWNFKWRRPLFDSEIDMAVAFLQEVEGF
RIRPDVDDQWMWAAEPSGSYSARSAYKAIREHIGRGEDGEFKELWKLRVPSKVAMFAWRLIKDKLPTRDNLKKKRVELQE
YLCPFCRSVEESASHLFFHCSKVSPLWWESLSWVNLVGVFPHHPSQHFIQHSLWSSEGLQANRWQWWWLALTYTIWKHRN
SIIFSNAAFDAHKVMDDAVFLLWTWLRCLEKDFTPHFNQWSSNLKDGFLRTAT
>L1-22_ACar_gag#LINE/L1 1327-2427  [Anolis carolinensis]
MSAAKNKMDKDKEKEKRGVGRKDSLTDDYSIKXVMFEILKLQTEVIKIQEKQDIQFNRVKEEMMNMRKEIKEEIQILVKE
EINKLREELETTKQEGLVRAKENIVIHNNYTEMKNEMKTIEKEIKAVKNQQESXEIKEKESQLRLRNVQESESENTREIC
IEIIAEMIKKTKEETDDEIERAYRVYSNYSKKFNTPRDIVVHFNKKRVRDEILSYNSKRPTLYKGEKIAILKEFPISVLE
RRRKYYFLTDELRKRSIKFRWDRIEGLMLTWEGHRKWITSEKNAKIFYEKYLNKDGKEDRKEEYQGKGKSEEEQRSDWSQ
SDREETGRQKKRIREKSPEDLIDLITLNREVKDKGEEIIKDDDGTKN
>L1-21_ACar_gag#LINE/L1 760-1878  [Anolis carolinensis]
MSAVKGKMEKEKDKDREKRGVGRKDSLSDEYSIKDVMFEILKLQTEVIKIQEKQDIQFNKVKEEMLNLRKELKDEIQTLV
KEEVHKLREELEVTKLEGTRRAEENRLIRNNQIEMRKEMKTLDKEIKAIKMQQEIMEIKEKELYLRLRNVQEGESENVRD
VCTDIIAEIIKKTKEGTEQEIESAYRAQSSYSKKHNTPRDIVIRFSKKKTRDDILLSNSKTPTFYKGERIAILKELPISV
LERRRKYLFLTDELKKRNIRFRWDRIDGLMLTWEGARKWITSEQSAKLFYEKYLNKDSKTDKVRKEDRKEEYQGQGKNED
EQRSEWSMSDKDDSGRMKKRIREKSPEDLINLAANITESKERGEETKREDGSS
>L1-31_XT_gag#LINE/L1 139-1032  [Xenopus (silurana) tropicalis]
MKGKNQNNKRKSEAPTRMEQFVRQAAQVTEPSNMAPEPAPPDPNVQTEAPQSQPTLHDLLRAVQQCQQTCQATIMTKTDE
LKAELSLIKHDMQRIRERTTAAEARISALEDTSRPLLQTTNDLQQQVEMWRKKVDDLENRARRSNIRLIGLPEREEGDHP
EAFVERLLKTWAGPDNLTTAFSVERAHRIPSRPPIPGAPPRPLIARIHNCKDRDKLLTIARKNGQIKNNNATISLYPDYS
AELQRQRARFLDIKKRLRQKEIPYSMIYPSKLRVQTTAGAKFFESPTDACNWLDSLGR
>L1-51_XT_pol#LINE/L1 1642-5460  [Xenopus (silurana) tropicalis]
MHHKQPTPMASTITTLNVNGLNSPNKRSQLIHWAKREKPKILCIQETHLITGQPTRLTNKEYPNQLYANSPIKKKGVAIW
FHKTLTPQIIQEHPDPEGRYLIILAQIQGQNYTIASVYAPTTKQSAFYRKFFKELNKLKQGRIIIGGDFNIPLQHQADTK
SEKQKNARPETSTHALNLKKHLKHHALYDAWRECNPKEKDYTYFSYPHARYSRIDYILVDKTTLQLLTKAHIGTRTWTDH
APVTISTKFSQTSPSTSHWRLNESLLNNNKVIQECNQTLKDYFSLNSTPDISQPTLWCAHKAVIRGQLIKTASLNKKQRE
QTMLDLTKQLNELEIQNKAQPKSQTTKLIRSIKGKIHELELIKINFQLRKLRLNYYTKGNKASKLLAKILQQKQQSQTID
HLLDSTGAKITNPKAIADVFATYYSTLYNLEKDPNTSQPSQQGIQTFLSKAKLPQISQDHLDLLNAPIQPMEIQTAINTT
SPGKAPGPDGLPTIYYKTFQAILLPHLTQLFNQIFQQGNFPEEMLKATITTIPKPGKSPTQCPNFRPISLLNCDLKIYAK
ILANRIKEILPTIIHQDQSGFTKGRQGLDNTRKMLALIEKANHQKMPVILLALDAEKAFDRVHWQYMTNTLKAFGLQGNI
LHAISTLYSKPTAQVTNMGFLSNPFQITNGTRQGCPLSPLIYNIVLEPLAKTIRDSIEITGIKAGTTEHKLALFADDIIL
TLSNPKQSVQKAFQILENYSRISYYKLNITKTQALPLNLPKPEQNDLKKDYSFQWKQETLTYLGIELANNIPNTYSNNYP
KLLKQIQSQLENWKPLYISWLGRMAAIKMMTLPKLLYLFRALPITLPQTFLRQIQTTIDTFIWNGKKPRIKRKHMQQHTK
EGGFGVPSIENYYKAAILEQLAMWNLPPDHKHWLQIEQEKIQPLTLQQLMWSEKPLQLTKGKTIYHTTTTALKIWTQQKA
QKHIHNFPAKLSPLNTLETMIPNLSITNWSHLGIQNLEQLITDNTMKPYEELQRDYKLPKHDLYKYLQIRHLLTPYLKNI
PDQQTEYEKWCFNKAGNKKGLSKIYRTLLSHKSDEKPNHIQKWEKDLNTTFTQAQWLQAANAAYKYSKCTNHIENQRKIL
YRWYKTPSILHQIYPTSSPNCWRCNTEKGTLLHIWWECPILAPFWTEVSQLLYDTMNLHIPLTAPLALLNHGIQDLPQDL
QKLTFHIITSARLLIPRLWKTSTIPTKEDLIYLTDSNLTYEQHAAQQLSKTTNKDKITQQIWRTWTKKHTSIT
>L1-35_XT#LINE/L1 1661-5404  [Xenopus (silurana) tropicalis]
MSMQNVILMSWNVRGLGSSIKRGLVNKYIRRHNPHIVLLQETHLDGSKLTTLKKPWVAAAYHAPYSSYSRGVSILIAKTC
TYSLHKVISDPGGRFLIIHICIMGKPLTIANIYIPPPFSDEILYSIMDKIAKMPFAPIIIMGDFNNVMNGAIDRLPIPNR
VDQTLSRWLDTFHLTDLWRARNIGSKQFTCFNAAHNTLSRIDLALGSPDIAQVTNDIQIMARGISDHSPIILKVQLNPEP
QDRTWRLSQYWINHPDIETPMANSIVEFLLLNEGTATKPIVWDTLKAYVRGEYITHIAYLKKQQTMQIDKLQQQALDKEA
QYVANPGPDTMSEWQNSQAELLLAQTQKVKKDILYHKTNILESGDKCGKLLAYLSRDPAQNTAIPNITTSTGNYTSHPKS
INETFREYYLTLYKSKLTVEPDDIAAYLARINLPTLDAQGRHLLEAPVTAQEVSDAIQTFPIGKTPGIDGLPIEWYRKYQ
KELTPSLVSLFNDVREGAPLPDSMRRAMIIVLPKPGKDPRECASYRPISLMNCDAKILAKILARRLNQVITQLIEIDQSG
FIPTRTTDINIRRLFTNLSVTHDNAGSRVIATLDNEKAFDSVEWAYLWATLQSMGFKENFMKWIQALYRDPEATIRTNQN
ISLPFALQRGTRQGCPLSPLLFAIAMEPLATLIRQSPRIGGLKLGGVTEKISLFADDTLLYLANPEIELNTALDIINKHT
NYSGLKINWSKSAVFPIDPQPLPPPQLPGGLQWTGEFKYLGIKIQRNIHKFVELNLLPLLQTVEQKVKSWTRLPLSLIGR
INLFKMVILPKFTYIFRQSPTKIPNSFFTKIRALLIQLYWHPSTPKISIAKLQLPTQAGGLAAPNLFLYYIAAKLTTANW
WASPTLDNPATRLEAQTVGSYEELKNLLYRGCSYTPKATPLMKEIVWAWNTALSLFPKPQNHCSELTPLWCNPKLQHLQT
IPDPQLWASFQIKYIQDIVKEGKLLDFQTLKNNFNLPNRMLFRYLQLRHAVHSQFQGTTLQTTPSRIEEQAHNCPHTKAL
SRSYALLALANDTLLNKLYNKWLIDIPDMNKEQWKETLDSIFDYIVASRDRLIQYKFLHRAYITPKVLAKISPSQVDECP
RCHQSPADFIHMVWTCNKIASFWTEVADYISDLTSTPITVTPSGMLLNQITDLAPTTAERALISILLAYARKSITMKWKA
HSAPSIQFWVSQVNQAMPTYRLLYVRRGCPNKFEKIWSSWLDKHNIEN
>L1-18_XT_pol#LINE/L1 1692-5462  [Xenopus (silurana) tropicalis]
MCTMAGPNIKLISWNVRGMNDKIKRAVILDHLKKLKADIILLQETHLVGQRVRALNKRWLSPTFHAEYSTYSRGVAILFR
KTIAPQVEKIVSDRYGRFIILKVTISMKTIILVNIYSPPPGELTILQTILGKVAELGDHPTFWLGDFNAVPDPTIDRLRP
LKGDTSALGDWLRATNLTDIWRWLHPTVQQYSCYTVTTSALSRIDLALASPSALQMVASTSFAPRICSDHAPLQLELRLS
EGKGPRQWRLPPKWITHKFVQDAFKSQIKEFWEINAETAPQQVVWDTSKAYARGTYISLIKEARRLQDSDLETLRKTQGE
AEKAYANDPSDTIGATLEITQRDVNLAYVHKHTQWELKRAASWYEKGDKCGKLLAILAREPTQMTSIPRLITPSGQEVLT
QDRIKAEFVSFYTTLYQSKINYPPETLTQYLSEIPIPQLSHRDAEALNREITLEEVTEAIDSFPNGKSPGPDGLPIEWYK
ANKDIITPQLCNLFNKITQGAHLPESAKLATISLILKQGKPPERCESYRPISLLNSDVKILAKVLANRLKQVIELLIHPD
QTGFMPSRATDINIRRLFTNIWAKHDDTGERVVVALDTEKAFDTVEWPYLWALLARYGLGPQFITWVKALYDSPTARILV
NAELSQAFPLERGTRQGCPLSPFLFALAIEPLAIRIRNNPDIQGLKLQRVEEKISLYADDMLIYLANPKQSLTELLTEVL
RFGGLSGLKVNWTKSLVFPIDRESVRDPLHGPQLQWVTSFTYLGIVIHRDLTQFTELNLTPALKSLRTKLHHWASLPLSL
PGRINILKMVWLPKFLYIFHNAPILPTKKWFREIDVCVREFIWAGERPRINMPMLQSPVKKGGLALPNFLLYFYASQLVY
ARWWLNPDPNNQATVLEAAVISSFEALANQLYRGLPPIYPLTPPMKTVTQVFARTVGLFHQKAGSWSKWTPLWGNNSLAQ
FKSFPDANLWAAAGVKRLNDVVEQGALKQFAKLKEEFGLQNYMVFRYLQLKHAYQVQFPREPPXITESTLERYLHRPDLS
KPLSWFYAILLQSNFDPVNHIKLKWAQDLPQLDNETWEDILEQIPEINIATRDRYIHVKFLNRVYLTPHRLAQMYQGYPD
VCVKCNLAQGNYLHVFWDCPKIQQFWTEILTYLSSTLGLPNIRTATFCLLGHTEGLTIPPGDRLCLQQLLHYARKAILLT
WKATEPPTLRFWTKLVDDILPRQKLTYLARGCPAKFEKVWSRWLADPRLHNTADQNG
>L1-15_CPa_pol#LINE/L1 6-2629 via tfasty with L1-3_CPa_pol, 3 frameshifts and 1 stopcodon. [Carica papaya]
LAAFLKDEGSVWRQRSKEKWLAEGDRNTKYFHALASHWRRSNYIEEVRFEDKKVKGNTELREAATCHFSKLYTENLAVCP
KLDGLPFNKISETSRQWLEAEFSEVYDGMKSCNGNKAPGPDGFNMKFLQFFWYLLKNDIVRIFKELHSTGRFVKSxNATF
ITLIPKKDGDKEVTDYRPISLVGCICKLIAKVLARRLSKVLVKIIGECQHAFVEGRQILDAVMAANETVDDLLTNKREGL
VCKLDMEKAYDHVNWTFVNYMLNRMGFGSKWRKWMKSCIKTASLRFYNGGPSNFFTASRGLRQGDPLSPLLFIIVMESLN
GLLVRANERLLLRGVPVGRGDNSTVVTHLFFADDTLIFCKPDLKNLLHLRCILLCFQAVSGLKINLNKSELARIGGSSDA
GPFARILGCKEVKFPFKYLGSPLGAKYKDLSTWEPIINMFENRLAGWKRGFLSKGGRYTLIKSTLTNLPIYYLSTITIPV
KVAKRLESIQCKFLWGDGLEERKYHLINWDDIKLPLDLGGLGVRSMVKLNEALQGKWLWRYWGEENRLWRRIIEARWGEH
LHGNSDGRIKIPHGRGLWRKILMMRKPFQQCINWKIGRGNRINFWEDDWVGNGCLRRRFPRIFNIAQSTKMTVEEAYRVI
NGNIVWCINVKRNLNDWEIEEFEDLLKCLDAQQISDRADQVVWKLEKNGKFSVSSYYKYLSDKGAVNRLEFPAKLIWKTK
IPPRIAFFAWEACWERILTLDRLKNMGRIIVNGCYCCLKAEETCNHLLLWCPTAYNLWCKIYGLLGINWVISGSVGREIW
AWDGFYVKRNMKNIIPLTVFWVIWKERNRRAFDSVESSTNRLIDRWIHLFGSIMLSHDITSDVDFGDVIDTLTSM
>L1-13_Mad_pol#LINE/L1 1295-5436 via tfasty with BvL1-2_pol, 1 frameshift. [Malus x domestica]
MKCLAWNCRGIRRKEFPSNFNFICSLAKLDLFCLMEIKVVVHKVPRNFYSKYFDNIFCCDPIGRSGGLCLCWNSTKVFVS
IISSSPRYIHCSVKDLVTNLEQLVTFIYAFPQKHWQCDLWEEVLKLDPIHSPWCLVGDFNNIVDLSEKVGGNQTHTTDMN
NFINFLNRGNLLSLNASGVPFTWTNCHTDHTVVFERLDRVVANPLWLNMFPNYHLHNYPIFGSDHSPILLSLNSSEEKNN
YFSFKFEAMWLNHPQFKMFVQNSWHCDPTINPKDKFRVCAGKFKFLVCKWNKDTFGNLKEKKKELLNEIDELQKQIMSNN
SVDLMMEKSLRDELNHVLLCEEIMWAQRAKTNWLQLGDKNTKFFQTVATIRKKMNEITKVKDENGFWWSVGQGLEQVFVH
DFKKRFSCDSPPSGADLSNLADIIQPCVSNHHNESLLSLVTDEEIWDAVSSIGALKALGPDGLSVAFFHGCWDQIRDSVS
CLVKDFFQNGSSLRLINHTNIALVPKIDNPETVSNYRPISLCNVSYKIITKIIIKRLKPLLDLCISQNQGAFAPGRAIQD
NILIAHEMFAGFNRMKGRTGAMGVKLDLEKAYDYLNWDYIRYVLLRFGFDNRWVELVMECITSPSFSVLINGRPHGYFYP
KRGIRQGDPLSPYIFIICMEPLIRHLNTLTNNPKSHIGILSSPRGFKISNLVFADDCLLFAKATPRGARNILQILNMFSK
AAGQQINFHKSSLYFSKNTTSPTRIDIVNILHIQHKTTIGKYLGIHNIVFWKDQVNGNELLKRVKRKLAGWKASTLSRAG
RLTLINSNLTGMPNHVMSCFKCPDKIVNKLNKECRDFFWGRDKKIFPVAWDSVCAPKKMGGLGVRRLDHFNNACLAKLGW
KVMTEEDNWWVKLVKSKYLRKENFLDNKIRQNHSFAWKGILKSRDVILKGMRWRVGNGKDILFWSHNWVFPYPLFHLLPN
IDNQNINWDLKVNEFIDNYCWDRRKLSQVVSNEIVRKICNITIPLQDSKDVLVWGPNTNGKFSVKSATWIQKGTLTQSTK
HKLINKMWKLNIPPKVKMFAWLFIRDRLQTRKRLSHIVINSDKMCPFCNSVDEDQMHLFFNCGVTKLIWDLCSIKPGNFT
NANFDSAVDWLNSLKHVDKEVPSDLSLCLLLCWQIWNDRNNMVFRNVLPIPARSKLLAISMGERYLKANGKGLRRNTDDT
STIVKWHPPDKSFVKLNFDGSVAGDKAAAGFVLRNHNGQIIGGGALNLDGATISEVEARALREGLLFAQRKGYTKIMVEG
DSKLVIQSVLDRGATPWNLVPIIEDIKWTATNFDCIDWKHIYREANFVADAFARHGLLITDCHIWDHCIPSFALHALQFD
SVRNSCTRGFFPLIYFSCLQK
>L1-15_GM_gag#LINE/L1 9-1253  [Glycine max]
MGRGRGRGRGRPAKIPVPPSTTTQKSPPKLNPEPSNASHEVTVEDYVSSEDDESEETPIPSANLPNCNVPEKPKEETNEN
KVPRKLWTDVISGNRKPENGMALEFFAPKIVEGKPIAEIEPEDIIGELKYWESALIMYVIGRDLSMNSVKQFMEKNWSFV
KLPDLFYNDEGYFIMRFHSSQDKDEILSKGPYTIMNMTMLLRDWSPEFNLKRDMLRTIPIWIKLPQLPLYLWGAKTMGKI
GSILGKPIVTDECTAQRLRISYARMLVEIDITQEMPKEVTIADNEGHELIQAVEYEWKPKYCGKCKKFGHVCEKPKVRKE
KVWVPKPTLKSNEQEEGGPSNKETQMINTTNTEDLVSEWTTVQKAGKKTVTDTGTMQKAGKKIITDTGTSELNCSNGFGL
LGVVNDSLVVQEKVP
>L1-15_XT_gag#LINE/L1 148-1083  [Xenopus (silurana) tropicalis]
MGQHKAQKRAXEAAARLEKFARETNQNGGAAERPASAPGSPAKTNAKPATGTANQRQXEPPXTSEPTLHDVLAEIRSAND
SCTTLINNKTXEIKIDLSIIKADLQKLRERTTAVESRVSNLEDSCRNLPEQYQTVQKLVTECQRKSDDLENRLRRSNLRF
VGFPEQXEGSAPEAFLEXWLKEIFGAEQLSNTFAIERAHRVPTRQAPPGAPPRPLIAKLLNARDRDKILALARTQGPLXH
QAAXISIYADYSAEVLRQRAGFXSGKGRLRTAGLTYAMMYPARLRVQADGKSYFFTTPQDLQSWMDARGIPP
>L1-15_STu_gag#LINE/L1 96-2033 [Solanum tuberosum]
MAGITSSGVNSIYYNAGFKSYEITRCKGGTDSWYEWTESSRKLVRRVKISIKVLRWLVSIFIEASKVQGKVIRRWKLKEH
FAEFYCSLKYNENGRFVSFIAIQGQNKSIIITPEASYMGGWSNIVHKIAKFIYEPNLQPKPQVNMGKQSNTSYREAVQSS
RWMTDSMKRAKLHVKEAHIEVTSGAPLAETDLLNRCIVGRFQDTLQETPALNDVRRWACNTWKSAIGVNVFAMNDGQFLF
ELPSRVAAEHVMSGVWVWKKMNLSLYWWKPTTGCWPDEVKRDWVWIRVMGLPLSLWSSSIFKQIGDQCGGFIETEEETKL
KNHLHWARIKVKGDGEKVPREVKISSDGYAYKVPIWCEAPVTVRKVETRRENEDREPLGKEVSRPSTMEKPTVYTPQHVG
TSTAGELLNWESRDQARDRSWKGKGQLHAVAGQISERKNQGPKKALGPTRFKQKESSQEAQRLDLVSVEIMANLSQTKTQ
NRFKNLDNLEVEERNFMPREQEETIQEEGENAVTVAKATNMGKQIMAVSQLNGQNDSNTEITEDAVPLMIQLPLEDNFNS
KSPPLWIKQHILKLSTEFGVDFRGCEEKAEELFMKIDNNKQGNKGGKGEVTTNKKKGANELKSLELDTKFMSFGTRSRGG
YLAIEQ
>L1-1_CPa_pol#LINE/L1 2227-6354  [Carica papaya]
MDCSFLVWNCQGAAKAGLRRALKSFVNIHNPALVALLEPRTAGEKADKVIKNLGFDYSHRVEAVGFSGGIWMMWKESIQV
NVDYNHRQFIHSRISRNDGREDFSLSIVYGSPNPHKRKDLWEELTIIGHHMDRPWLLVGDFNAILDSDDRRRGGAAKRSK
GCALFNHFIDVNSLQQLDYVGPNFTWRRGTLFQRLDRAICNQRWFNQFPEAIVHHLPKVQSDHRPLLIIPYTRHTHNKDP
KPFRFLAAWLSHPDFPNLVRRNWQNHLPIQENISNFSETVQDWNRNVFGHITKRKRILLARLNGIQRALERHHSVRLQEL
EKSLKEELEGVLLQEEMLWKQKSRCNWISLGDRNTKYFHAQTISRRKKNKISMLKDGDGNWSTDEGQLRIMASTFFEHLY
TAEEGPIPHYPVRGLFPKLTATMVAQLDSEITNHEIYDALFSMHPLKAPGVDGLHAAFFQNQWETVGESVCAMVKGIFHG
EQLPAEINKTLITLIPKVARPETIKEFRPISLLTVLYKIVTKLIANRLKNLMPFLVGPTQASFVAGRNITDNIIIAQEVV
HSMRHLRGKDKWMTIKVDLEKAYDRIRWEYVEDTLLDVGLPPNLIRVIMQCISSCSMQLLWNGCLTQEFRPTRGIRQGDP
LSPYIFVLCMERLSHCINTWVRNGMWKPIRLGKKGPALSHLFFADDLVILGKATEDQTQVIKKVLEDFCASSGHKVSATK
TLTFFSRNVTTGEASRISKMFGFQVSNNLGKYLGVPLLHDRVNKDTYHYILEKINQKLSGWNANLLSFAGRLTLAKSVLM
TIPAYAMQTTTLPKSLCDQIEAVVRKFLWGQGNDNRKISLVSWDDMCMPYDAGGSGLRSIHKQNQAFLMKLGFAMVAKPD
LLWVQVLTHKYRWSGLSRNYKPTGPISHLWRNLNHLWTDLRVGIKWSIGSGRNVRFWEDCWLGDLGPLKLLAFAPIDEQD
LHRCVRDYVVSSGQWDWEALHRVLPMGTLLQMAAVPTPRDDNIPDSCFWGMTSSGCFSVSSAYALLESDHWHPEDRNWRD
IWRWPGAQRVRTFLWLAAKGKLLTNWERYRRHMSSTAECSRCGDPIEDVDHVLRNCSVAKLLWLKIIPAEAQSTFFCGTV
DEWFVLNLKNNWPWCKTFQDWRVTFGLTCWSLWNHRNKFIFQESESSIDELAKDVSLMTDYTFMANNMNLYFLSGMAHRS
EELVAWQKPPRGWLKVNTDGAYRAATNLACCGGLIRDEDGACLRSFSRKIGRCSVLQAELWGAFDGLQLAWNAGFCSIIL
EMDSALAVQLLTKEDYGTNAHAALVREIKHLLLQDWQVRIQHVYREGNKCADWLTNAGFSLPMGLHSHVQVPNDLQQLLT
DDIMGVSWPRMCMTIS
>L1-1_Acar_gag#LINE/L1 253-1146 [Anolis carolinensis]
MEQAGDNSXIPGKVMSSDEKLDFLMTLMTEMNTSIKSLASEFVDIKTTLSEIKHHADDNESRIEQLEKETKFLKTKLIDS
ENRLRRRNLRVKGVPENIKDLSQFVIELCSNYGISLSENDIERAHKSPPFKKPQSAFPRDTIVAFAREKTRDLIFKKLRS
IWNLHYKDYKIFIYPDLAKETRQDREALRPITRSLNKAGIRFMWSFPATILFHRDGKKYTVKTLREGIELLKELGIYQDM
AGDKTLGRGPEDGREVPKDTPREERGGGEEAERKKRQKTGKKDNYQRMQTRSTDKQFN
>L1-1_CR_gag#LINE/L1 1057-2109  May have to hide this one; no matches to other gags so far, prone to low complexity matches. [Chlamydomonas]
MALPRRRPGVGDGCNQPRTHRRRRRSNSPAPKGAVAPPSSRSRGQGAWAAGCLPRRTVLARRRTCPLGGRPGDSRLVGAA
GRGARVEERGGQCPSRRPRRGRHCRRHNRRVVVRAGAGVSADTAGRAGGGAGSEAEYGAVCLTRDTCVAIGSDLVTHQNR
CADVQGYEWAQLGRDTLGGRLLAYLRDQGATVPDWAVCRVPAGRTAVLAQLHDEFTGWWRLYSAQPADTPLPSDVTEQLD
DAAQQVQTAYMDYVLLDARTLRSAKRGPADPGGASGPSRRQRQHRSRSTSSLMSLGSAPLRPGGASSGAASMSTSSGGAP
PSQGGGRRGKRHSSNSNRNRHGAAVAGGGS
>L1-1_Mad_gag#LINE/L1 1-2112  Overextended to beginning. Clip a bit. [Malus x domestica]
MHRKELGEGRRKGWERGDWEKRERVLPSSRLSGRNVRYKHLARDFKVEQKVFILEVEDKSLGERICLTERTRFRGFQISF
DLGCASWLSVQIKTAITASARSFFRLYRGLNYQFWVESFNNKNGIFLVLSKSENQGLVRKIIVPKGVNFFGWRKMEELLS
EILRGGKKGGVASGTLFQSKRLARREAPEPPRIHSCVVPQLSYKDAALGGIKATNLVPNAIAGEKIWIEKSRTKSDKSPE
AFNWGSVIVCERQVVHQPWREVEDSLLNIMGRKASLVPFQCNKALFVCKNEEEAAQIAQIGVLSMIGFPEVVLSGWWESI
KPSERKVVSYGGWIALEGLPPHLWTSDFFHEIGDACGGLVEIDRKTADFEFLLEAKIRIKQNNTGFIPEFVEVADGDFVV
RVKIRQLSPARRPKASVAEYGESRHLKMSRRPLKAELKTQKANGILPPAMAISNPGNQSCPSVESRACFQIGEFKCPITM
GSGRKQGVLSGEKLTDGGRSKELEVYVREKQGVLSGEQKLSEGGSNSPSGKFVRVEEGLISNGGDYFNLSKGLSSTVGGI
SNCLEKEFYIHEEVASGFXTHQGVFNINFEGKVGCGPIKAYDGQSQVDCGSTSDQKIFNVFVGGKDGSGPHKVCNGHIQI
GAFLGYPQRPITLEFFGLNPRAHHGNEVMVMPNFQSVDLFTSRWHQKGAPLGPREGNRSHYNLQ
>L1-1_CR_pol#LINE/L1 2109-6713  [Chlamydomonas]
MRPPVGAANLRLLTVNVNGLGSPFKARALVSHLQQVGADVAMVQETHATDTTALESCLRAAQGACLPWRHCLAASPAASP
HSCGAAILARSRLSLPGCVLQPPSTDAAGRVVCWDWDVGHLRLRFVCVYAPTAVADKPAFFAGLHPHLATDRVLVVGGDW
NCVTDASQEAAPSPSRAAGAPQLASLLAQFSLVDPWASKRGGAKGYTHPATPKPATPARLDRWYVSATAAPWVVDVARTY
GAPGDHNGVLLTLSLPDLPHAHREQWRFPTYLLFHPSLRLELEQRLEAHVAANPVASTGDGACTQWEADKFFLREAATSI
HRRHARQTRDGLHGVVLAADAAAALADRPGASAAQRQAAAMANLAVREERAAAAAASHNARAALMEEHGERGTRWFHRQA
DEPAAGAQEPITHLKVPGQPAPVALTGPGTRNTVSAAAAAMYSSTSPTGLFRVQPVCTASQQQLLAAIDRKVPADLQAAA
EGSGDGALSDAELMAALAGSANGKAPGSDGVPYEVYKVFWALLGPRLCAAAAAAFAAAADAHDGGEMAAALPASWREGII
TLIYKGKSLDRAELASYRPITLLNCDFKMVSKAVSARLQPALDAVVDELQTAFITGRWIGDNALYLQGLIEWMRLDVGAD
GTPRQGGALYFLDIEKAYDRVHRQWLYASAEGLGFGPRMLRWIRLLTANGSARVCVNGMLSDAFPVLNGLPQGSTASPPL
WVIQMQPLTSFLRRQVEQGALRTPLLPSGEQAPPAAHHADDTTLTARDPAVDGPVLMAAVQLFCRASNARVHPDKSKAMG
LGRFAHLTGPCPHTGVPFTTGAVTHLGVPLSWDSDAAAADLYTRRARGMAFVARLWAALSLTLVGRVHIAKQVLAAKLAY
HFSFLNPSPAQLKELTDLVDHFAARSMHAEDASLVSHGNPLLLPKRETACLPYKDGGVNHVDLPAFLSALQAKTFALLAQ
PGRQPWKMLTRALLTHVRPDSATTWAWVYSDAPAPAGLPARLAAAVGHVRSAGVEQHPPQPATQPPAAPPQWRVSLDQLW
VANAAGAVSYVHYTGRLLEPGPGVLPPAVDGAWQPACVLQHRKPRHLWTFEERAAYDAASPGERAGAWPRAPYFLAPEAG
VVVHPEHCRIAGVSLADYTVRDVRRAITAANPAAPPAPARPAAMPCPAPAQQAGGSGTQPAAQSRLAEREAEWQRAAAQL
TTTAAQHFHNNPVALDPWLHRTSAAAGLQNTPARELQSYASPSQQSGEGPRRSARLQEQAAGGAGPSTGPATAAAAAAAA
VEGDPRMPPPDASLLRGTWRRLWDSHASRGAKVLVYRLQHAYLPCGLYRAGKGIRPRVTTGCGGLGAHCPHPACGPPGPR
AWASLTHIFLECPAYAQARTWLQQLWACVAPQAAAPPVTDAGFMLGDRMGMWASGPRGAGALLWSTLRATFLYAVWCAYW
SREPAKQTSEHVVREVVSELRRVMQLRFTAATLTPETLSALPTQLLTAQLKAAKLEHFVAIWSAGGALCEVEEVQGGSPK
LNLRLTLASPVQAP
>Karin_TM_gag#LINE/L1 786-2507 [Triticum monococcum]
MVAVVGAPSKPLQDVRVVASLGTLVGKTKRVDMAFTRAHGVARLLVSVLDIEFVPDVVNWTYRGEVFPLDVEFEDTDLFA
DTVNGNDVDMHEGDGDAGANGAQPDESAREGSNASRPDAQLPGDGTGVEPAASPSVPMTSLRFGSFEPASAPPRLWSDRV
DSDDLFERTLPLLEFEGAGGSGRLVRASSVRTLDGDGVGEPEVASLSLPSLVVEAPVRMATCELVLGGGGSGQEALMSPL
HIPTPVTPVPLGSASAGGGSPRQVASAPATPVVAATHAPSSALGEGLGQEALAHPSSPAVLRTASPSPIALPSAPADGMG
GERGQAAPVIPSTFAPVAEDSGVGHPSVGLGSPQPPPLVTSVAPLRDSAPGFTREEVAAFGGIPDPASTGRRMSARIHEL
PEVDDMQPRCAMRAAKIHEVASSSGMSVNVSNSLLHFSNEEIINNANQLGVSLGATDTEINNSVNDLLDLEAERVLETIR
NLAAAKPMNDQEINALGVRVLDSLCADLAPPNQVGEDDDVPIEIDADNLSQPGYEDQEAEPSKPKRKWKRKIYPDSAVRR
SARIRITKKFHDEI
>ATLINE1_7_pol#LINE/L1 1881-5528 [Arabidopsis thaliana]
MDFRRMLQICDFEDLKHFGDPFSWIGKRYTHDVACCLDRTLVNNEWLAEHPASHSEFLEFIESDHRPVITTISNDFTPRQ
GQFYFDSRMIGQDGFNDAVKMGWKLRMRGHHEGIGSRLKNCRTEISKWKRRYRRSGCDEIVLLKHRLDKAHSVGSSTQQL
RDLRLQLTRAYENEEEFWRIKSRKTWLSSGERNTQYFFASAKTRAAKNRLISLIDDHGTEHRGDTHIGVVAEQFFTKLFE
SDLNPQNNHYHVLHEFQTRVTPEMNANLIKPVSEEEIKQAVFSIGSTKAPGPDGFTGAFFQQYWEDIKTELIEEVQNFFE
HGSFDKSLNHTNICLIPKTSEAKHLSEYRPIALCNVSYKVISRVLVERLQRHLSSIISEEQAAFIPGRVITDNVLIAHEV
IHALKVKKRCANSFLAIKTDITKAYDRLEWDFLQATMFRFGFDVKWIKWIMTCVRTTTYSVNINGAPHGFIEPKRGIRQG
DPLSPYLFILCAEVLSHMMKRAERNGAIKGIKISNGGPAISHLLFADDSLFFCQANKKSVQEIKSILYQYEQASGQKVNT
RKSAITFGKRVSEATKTQIRRCLQILNDGGCSKYLGMPEQFGRKKVELFQYIVEKVRERTNGWSNKFLSQGGKEVLLKSI
AIAMPVYCMNCFKLPRSICDEIERLMANYWWQTNRNDSPTHWVAWDRLKHLKKEGGLGFRDIEKFNESMLAKQAWRILQN
PSCLLARVLKGRYFSSSNILTATRGSRPSFGWQSILLGRDLLKRGLRFTIGNDTTIQPWVDPWLPIHPPRPPRLTSPTSI
TRVNELFLHHQAAWNETLIRAVVHPDDVSHILRIKISSHQDKDYLGWHYSDTGIYSVRSGYWLAMHLPDQEVLPLPPHGD
PQLKQSIWKTKTAPKIKHFLWKLLSRGLPTGEELERRHMITNGPCRRCVTELETTHHLFFTCPHATMMWRASHVPIRSIF
DPVVSLEAKIRAILDFNNQKDTSNHLTHLPLWILWKLWRSRNILTFQQRSSNWQKDLREAKQDATEWSSLLLPSSHNRHT
THTGHQTRVVTSKTWKRPRAGLVKCNYDGGFLNSEQSVTTGWVLRDDDGDYKGSAQSTGFMVTSAVEAECQSLITAMQHL
WTKGYRRIIFEGDSKILVSVLQSNSMRFDLFNWLKEIKHWQARFEEVEYAWVPRTANAPADKLARHQRLSQTLFTFHNLI
PSCLSRALYSDSINQ
>ATLINE1_6_pol#LINE/L1 1537-5480  via tfasty with 4538901_Ath, 3 frameshifts and 3 stopcodons.  [Arabidopsis]
MTVQRIKEIRKKIFPDLLFLMETKNSSETVLQSLQWLDYPSHHLVPPESPAAGGLGLFWKSSVEVEIIHSSLHYIDTKIK
AKGRTFYSTFLYGEPDRTKRLQIWNALQELSSSREGPWFITGDFNDIVNSAEKSGGPDRPEGSFTDLRSFMSSCDLYDLK
HTGNFLSWRGRRHSHLVRCRLDRAMANSDWIIAYPSGRSEYLRFEGSDHRPLVTSFDHVQKKTKNIFRYDRTLKDNPEIS
KLMNETWKSNPSAKVDYRLHLCRAALLNWSKEHHLNSQKEILSLRVQLEEALTDDAATQDSVDLLNQNLLLAYRKEETFW
KQRSRNLWLALGDKNSCFFHAATNSRRAINTISVIENSAGTSVYEDSEIIETISDYFQDIFTSQEGDRTSVVAEALSPCI
TTDMNNTLISLPTVAEIKQACLSIHPDKAPGRDGFSASFFQSNWSTVSEEITAEVQAFFISEILPQKINHTHVRLIPKIP
APQKVSDYRPIALCSVYYKIIAKLLAKRLQPILHSCISENQSAFVPQRAISDNVLITHEALHYLKNSGALVNCYMAVKTD
MSKAYDRLEWDFVKAALEEMGFHHHFVGWIMXCISTISYSFLLNGQAKGLVVPERGIRQGDPLSPYIFIICSEVLSRMCL
KAQENGSLPGIRVAMGCPRVNHLLFADDTMFFCRVDPKSCLKLKSILHKYELASGQKINQAKYSITFSAKTPPAVRERVK
QILLIQKEGGQGKYLGLPELFGRKKKDLFTAIVDRIKQRALSWSSRFLSSAGKLTMLKSVLSTMPTYTMSCFQLPLSLCK
RIQSTLTRFWWDSKPDQRKMSWISWQKMTLSFKSGGLGFRDVQTFNKALLAKLSWRLLQNPSCLLAKLLLGKYCKHSTLL
DCKVSNSASHGWRSICLGRDVLSLQLGRLIGNGLTTPIWRAPWLSLTKSXAPMGPPTEASHLLVVSDLLIAGTTNWNKEL
IRQLLPVYEKDILLLKPSLLGAADRWAWLPTSSGLYAANSGYFEALKETASLENPPNHDLVKNFNWRSNIWGLQTSPKTK
HLPVGSNLLLRHISDTAKCPRCEQAESTLHLFFHCSFARRIWDLAPFSIRPNFDGIRSFKEGLVLANTLICLPPTGIGSG
PLFPWLLWTIWTARLIFNKRQVLEEEAIHMAILRAKEWQEAQTPQDLHRRSPPEPSASPPCYRXSDCYTDVAWLPDCRAG
FGWIFKSAQDFQLFAGNSSASDVGSPLIAETLVTLADVRVACESDIKAISFASDSQIIVKALNQKLQVKELHGILHDILS
LSSSFDACTFTFINREFNHQADALAKRALVCCMEP
>ATLINE1_8_pol#LINE/L1 1445-5553 (2 stopcodons, 1 frameshift, estwise with 2583130_Ath) [Arabidopsis thaliana]
IRTAAWNCRGLGNDLAVRRLKEIKKKFSPNIIVLMETKQRNDIVKDVCSEVGYDRVVTVPPDGLSGGIALMWKSNVSVSV
LYQSPNLVDTYVNINGFGFYLPCVYGHPNQTYRHLVWERLERTATQRTGPWMAIGDFNEIRGNDEKRGGNPRPESSFIDF
RKMLQVCDFQDLKHLSDPFSWVGKRHSHDVACCLDRSLVNTEWLTQFPASHMEFLDLIESDHCPIITTITSDFEQQHNQF
CFDGRVVDRDGFSDAIRRSWNKRFDNHDDTLRARLTECRRAISQWKRRYRSNAKEDIALLKKRIDRAHTDGSSIQRIWAL
RLQLSKAYADEEEFWRLKSRKTWLASGDRNTKYFFASTKIRKSRNRMHSIFDDDGVEHRGDSNIGKVAQHFFSNLFHNDL
TTNNNHYHVLNGFTQRVTSDMNDDLTKRITXEEIAEAVFSIGGSKAPGPDGFTGDFYHKYWADIKQTVMKEVHNFFENGV
FDKSMNHTNLCLIPKPEHPRHRSDYKPIALCNVSYKIISKILVGRLKKHLSSIISEEQAAFIPGRVITDNVIISHEITHA
LKVKKRCSTSYTAIKTDITKAYDRLEWDFLQATMFKFGFDVRWIEWIMTCVRTATFSVNINGAPYGFIQPERGICQGDPL
SPYLFILCAEVLSHMMKKAEQQGHIKGIKISNKSPPISHLLFADDSLFFCQANMKSCLAIKDILTQYERASGQKVNTNKS
ALHFGKRVQDTMKTSIRRTLQIHNDGGCNKYLGLPEQFGRKKIELFQYIVEKVREKTKGWRNRFLFHGGKEVLLKAIALA
MPVYSMNCYKLPKNICEEIERTIAQYWWSTQPEGNAMHXVAWDRMKFSKDEGGLGFRDIGKFNDALLAKQAWRILQHPEC
LMARVLQGRYFPNSNVLVATNGSQASFGWQSILKGRNLLKXGMRYIMGNGDLIQTWADPWLPLHTPRPPRRLDQNQQRVL
HIQDFFLPNKTGWNEQLLREHVVPEDVPHILTLKLSQTQMTDYLGWHYTESGIYSLKSGYWLASHLPEGEPTTRPQAGNP
QLKQRILKTTTAPKIKHFLWRMLSRALGTGEELERRHIHQDKFCNRCITETETTDHLFFTCPHATQIWRASSIPIHDLMD
PHISLETKMITLFEWHKLGTNNSLQAHLPFWILWRIWKSRNKLTFMRRNNQWQKDLQSANQDAEEWSTYGGNYRDSCKNP
VLVSDNRTPHHWKRPEADWIQCNYDGSFTQQXRNXTGAWIIRNEHGHYKGAGKAISTQTTNSLEAECHSLLSAMQHLWSQ
GYTRVIFEGDCKILVDVLRGKTLRFDIANWLQDILSWKRRFKEVKFSWIPRQGNQPADKLVKSHRFNDQDFSFYYYVPIC
ISNLLHSDYV
>HAL1_gag#LINE/L1 1076-1999  [Eutheria]
KYDSRNXNSIEGLEDKVEEXSQKVEQKDKEMENRREKIKKLEDQSRRSNIRXIGVPERENREXDGREIIKEIXQENFPEL
KDMSFQIERAHRVPSTMNEKNRPTPRHIIVKFQNTGDKEKILKASREKKQVTYKGSGIRMASDFSTATLEARRQWSNAFK
ILRENDFQPRILYPAKLSIKCEGRIKTFSDMQGLKKFTSHAPFLRKLLEDVLHQNEGVNQERGRHGIQETGDPTQERGEG
NSQDDGEGKSQDDSCAXGLESNQSRLEQEDRRLQERXLQENETDRXPDVFEHIERRFIQLAESLGMN
>ATLINE2_pol#LINE/L1 1515-5194  via tfasty with 9758853_Ath, 1 frameshift and 3 stopcodons.  [Arabidopsis]
MSGFFWNIRGFNKHNKQKVVREWIKKTSLQFGCVLETRVIESKVPVIFAKVFKDWQMVSNYEFNRLGRIWVVWSSSVQLQ
VIFKSSQMIVCLVRVEHYDVEFICSFIYASNFVEERKKLWQDLHNLQNSVAFRNKPWLLFGDFNETLKMEEHSSYAVSPM
VTPGMRDFQIVVRYCSLEDMRTHGPLFTWGNKRNEGLICKKLDRVLLNPEYNSAYPHSYCIMDSGGCSDHLRGRFHLRSA
IQKPKGPFKFTNVIAAHPEFMPKVEDFWKNTTELFPSTSTLFRFSKKLKELKPILKDLSRNNLSDLTRRATYAYEELCRC
QTKSLTTLNPHDIVDESLAFERWEKVAXLEEEFLRQRSKLHWLQVGDNNTKAFYNVLKERHLLNAIHEVMDPQGTRPPNQ
DDIKIEAVRFFSDLLSSQPSDFTGISVDELKGILQYRYSLHEQNLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRE
TWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQS
AFISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTASFSVQVN
GELAGYFQSKXGLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLA
IFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNR
FLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKAKVAWHDVCKPKSEGGLGLRSLVDAN
KICCFKLIWRLVSAKHSLWVNWIQNNLIRTGXFWSVKANTTLGSWMWKKLLKYRHEAKEFFKMEVFCGRQTSFWYDHWCS
LGQLHGLLGDRGFIDLGISSSCSVAEALSSHRRRSHRDDILNDIEEELEKLLCRGICTEQDRSLCRSIGGQFKAKFFSPE
IWHQIREQGLVKQWHKAIWFSGATPKFTFISWLAAHDRLTTGDKMASWNRGISSVCVLCNISAESRDHLFFSCNFSSHIW
DRLTRRLLLCRYTTNFPALLLLLSGQDFSGTKRFLLRYVFQATIHTLWRERNKRRHGDLPIPSDHIIKFIDRQTRNRLST
ITKQGLHKYADGLRIWFAARDNLTPNH
>L1-1_Mad_pol#LINE/L1 2855-6517 L1-2_Mad_pol over 86% identical [Malus x domestica]
MKIISWNIRGLGSRRKXVLLKDYFRRARADIIILQETKTATIDRKLVASVWGSRFKEWVFAPARGSSGGIVVMWNTKHIS
VVESLVGVFSVSIKIRESNGLEWWLSGVYGPCKYRERQDFWEELAGLYGLCGPRWCVGGDFNVVRFENEKSNGGRSTASM
RIFNQFIQDSELIDPDLLNAQFTWSNFREETVCRRLDRFLFSGGWEESFPHARQKALARVTSDHCPIELDTNKVTWGPGP
FRFENSWLQHPDFRNNLKEWWLSAIVEGWEGYKFSSKLKIIKKKLQSWSKEVFGDTERNLKEAHAKLEEIDFKEGREGLD
PDSKRKREETRFLVEDLAWKEEVKWRQRSKVEWAKDGDGNTRFFHKVASGRRKRNFIERLEAEDGRMVEGVEEIENEIIH
FFKSLYSSNEEECWGLDGINWCPINATEAAWLERPFEEAEVKKAVFDCGNDKSPGPDGFSLQMFQSCWDILKADILKVLE
EFFENGIINAVTNETYICLIPKKADSVNLRDYRPISLVTSLYKVVAKVLATRLKNVMGSTISPSQGAFVKDRQILDAVLV
ANEVVEEVRQKKEEGLVLKIDFEKAYDHVDWRFLEEVLLRKGFGYRWRKWVLGCISTANFSVLINGRPRGKFKASRGLRQ
GDPLSPFLFTLVVDVLSRLIEKAQENHLIXGLRVGQDNVEISHLQFADDTIFFLAGHEEAWNNLLHLLQIFGKVSGLKIN
KAKCSLVGINSDGEKITRLASSWGCEVGSWPMKYLGLPLGGKPKSIKFWDPVVEKVELRLQGWKKAFLSRGGRLTLIQAV
LGSLPIYYMSLFKAPRGVIGRLEKLMKGFLWEGVEEGKKFHLVKWEKVCKSKEEGGLGLGNLRNRNAALLAKWLWRFPRE
SNSLWHRVIKSKYGLVANGWDANCPSRGSSRCPWTDISAGYPPFLHSCNFEVGNGERLRFWEDGWLEGGPLKEQFPRLFS
LSRTKNQSISNLVASSLQPVSWNLEFRRNLRESEIEEVAGLLQKVESVRLCHSREDRRRWNLEGSGQFTCKSYNSFLCNN
DVVQQFPPFAQIWKAKVPPKVKILVWLVALGKVNTCDQVQRRMPFACFSPHWCTLCKSGEESVNHVFLHCPYSIQLWWKL
LKEAGARWVTPKGCFELLSTKFEGLGKGRKAKTLWGSLLMALFWNIWLERNKRVFEDYKGVGVEXLWDRVKHWAALWASV
SVEFRDYNFSSIFRDLLAAVI
>L1-3_Mad_pol#LINE/L1 1899-6038  [Malus x domestica]
MKLVYWNIRGIGNSDTRTELSNVCHSHHPDLVCISEPMVTFDSIPSAYWNSLGLSLLTVNNRGDLLPNIWVLYSTDYCSP
TVISSSGQQVTFQTSFEGVLSQFTIVYAATTSTLRRVLWCDLLNIRSNTTMPWMAIGDFNAILGAHEQMGGHLPARTSCE
DFRSTTELCDFTHMDTTGAFYTWTNGWSVRGYMERRLDRSLCDTRWLQSWPYTSCSALPRVVSDHNCLVFSASAIRLGGP
RPFRFQSMWTLHSEFSGLVAKCWQSTVVYGCPMFVMLEKLKALKRCLRVWNSNVFGDVHRNVTFAKERLHNIQNSISSDG
NSQEKFNEEVVAKTAVLDALQMQEAFWHDRARVKWLTEGDRNTAFFHAYARGRHSSSRIVTLLDGDNVLSSHTAIVDHVV
NFYQSLYNSSFTPTGIEDVCGVIPPMVSEEENLSLSCLPSADEIRSVVFSMDPSSAPGPDGFPGSFYQSCWDIVGLDVIA
FVQDFFKRGWLYPNANCNFVVLIPKVEGVATIAQYRPIALANFLFKIIPKILADRLGPIATRIISPQQTTFLKGRRISDC
IGLVSEGFNFMDKKAFGGNVGIKVDIAKAFDTLNWDFLLHVLSSFGFSSIFVDWVRVLLQSARLSILVNGTPHGFFSCSR
GVRQGDPLSPLLFCLAEEALSRGLSSLFSTGRITSISAPRGCCPPTHVLYADDLFIFCRGNVRSLRSLRNFLDKYGCASG
QLVNASKSTFYLGSSSVHRKAHVSRHLGFRLGVVPFTYLGVPIFRGKPKRIHFQALVDKAKARLSGWKGKLLSMAGRFQL
VQSVYQSLFLHSFSVYQLPSCVLKHLSACARNFIWSGDLSSRKLVTVDWSMVCGPKKEGGLGLRDLASLNLTALLSFGWD
ALQSYSLWGSFARQRFPLSPYRNQNIYLRSSVWHGLKRALPILNNNSRWIIGDGRSVSFWFDKWLDEPIISPSLSSVISP
KVLPRVSDVIEAQSWSLPDYFSNLFPSIVQQILRLPLPLNVKDDKLIWEPSPTGKFSFSSGYHLIRRRHSDCAWAKVIWQ
HFIPPRLSILAWRLFHDKLPTEDALQRRGISLASICCLCHNSEESTAHLFFGCRISRQLWRWLACQFGTSLPLPDSLVAF
WDVYVRKPFSKQLHNLWIFAGLSTISAIWKARNKFIFEGRPIYFHRLCMSINSAIVHGGKFIPGYSQGFDTRIISSLGIQ
PIPRKAPTILPVLWSPPWFPWVKLNTDGLSKGNPGPAACGGVFRNCHGRFLGGFCQRIGHCNSFFAELSAIIIGIEFAYQ
RGWHCLWLESDSSSVISALQSSDFDPPWPLHTQWSICLDRIRKMTFYASHIYREGNLVADNFANMGLSSPSLTWHDSPPM
AVRAALFSDYVGLPGYRFSN
>L1-3_Mad_gag#LINE/L1 393-1700  [Malus x domestica]
MDKSPVALCPWGFLDFSATSSKLNTATGQLSGQLPKARTFAAIVTNGVESSVNLSQLPSPTVRGDVTYVKISEDLYQEQL
RSCRTNLIGRLLLKKGTMPMKTELLKSALASLWKLHNSWKLVPLGKGYFDLHFSSEEDMRRVWGGGTCTLQFGLFRLSQW
QPDFKPGDVLPQTHAQVWIKIYGLSQEYWHPRILMEIARGVGTPLQLDHATREKLYGYYARILVDVDLSADLPSTIMVER
EQHGFSVDIIYENLPPTCGHCGVIGHNTNKCRHLKGNHSDGMHPDVEAHRRGRSPTRQVYRPKPSAKTVSPSGDTIHMER
SPSVEIIHNKRSTGLNNDMGAPLCSSLEQRHAEQVNDFANQILMTVVNNELSVLADKVIDSSTDPHGHLETISDRQLLEV
QPTNIINDSPSCNLNDTLSEEMRDVPTEEINIDQQC
>L1-3_VC_gag#LINE/L1 113-1837 (QAPPQL-repeat collapsed) [Volvox carteri]
MAENGQARTSAPNERSNGRATAPAARQQPSRAQAERKFVNIDIIMETVPEGTPFHAEQDQVTMEIHWPAGSDPADIQAQL
HGPVGKAILNRLRAIIPPVEAEGLLGPRISKCPQRALPSGVKVQEISILIRKGGLAMLTTSPAVQRGRLHLGPVHLLPSS
PPVEVELPITNLYKAERPYWEIKGIPTYLDPRVIPGFLAVCYSTQWFRWDESDIHELNPTMMADTWRVKVAQDTPGLPGE
KHFELGRAGEATRSGILRASRLKRTDQEGPFTMPCKAPPRKELARQTQQLQQMRRQGRTAQPVAAPGQPGPSNGGGPSYA
AAVMRSRWGMETAMGAGPQLAPMGRGLNPELQPYVTPPPVPPASAITTTNVATTITTAANTPAAIAATNHAASNPAVPAQ
PGQAAPATAAMVGPQQAPPQLQAPPPPPGPCRCSPPPVRPRNSQAPRRRQQLYKG
>L1-4_Mad_gag#LINE/L1 298-1890  [Malus x domestica]
MGTNIVCPWGFLAETVMPTTNMPPAQPILKARTFASVVSIPIEDVHLSQLPTPVVRGDKTYVKISEDLYQEQLKLFQNNL
LGRLLLKKGSTPMKTGALKSCLEDAWRPTAPWNLVPIGKGYFDIHFNKEDDMRRAWGGGTCTLATGLFRLSKWTPDFKPG
DVLPQTHAQVWIKIFGLSQEYWHPRHLMEIARGVGTPLQLDSATRERQYGYYARILVDVNLADDLPTSLMVERESHGFPV
EVVYENLPPKCSHCGLIGHLANSCRQLKQMSRGRSRSRTRKGGNMGDNKTGDHSRSQLHMEYRPKKDTTIPVNVFCGSHA
SEPLQQVDQLLPAGIEAADDGNXEPILQSPLGTTPTVSGNVIPETDTADTHIGIQSPGISHISNSMTGSLSPDGSHPQNG
LSYGQHLGNTNVPNNLGPHDLCDDSSTPPGFEQVETVAQNSQQLGNTDVPNNFGMQDPHDNHSIPPGFEHVATLAKDVID
IVNHIEGCDMDGFTPVLSNSQRKKQKQLANLNQPSDKPYPSRVRGIPARYK
>L1-4_Cis_pol#LINE/L1 1907-5434 via tfasty with L1_Cis1a_2541-6080, 3 frameshifts.  [Ciona savignyi]
MDNTIEESIEILSYPLNIATLNINGISTKLNHLENYIQINEIDIICIQETHRITPKIIHTLTNNLHYKIFINCLVSDVPS
RNAYGNITLIKSHLLNKFKFDHNIXLDNLMDKITXKCNSIIINLYNVYLKCKNKTVRKDMILKLKDNIDNXITHNIILXD
FNMVMDEIDVNGYFNSKNHMDRAAWKQLEKDYNINDAFRYFKKQQITYSRIXEKSATRIDRIYTSKSXNNKTLNYSHKPN
XFXDHNNCPVISLKIDNDKKWGPSFYKLNTSILEYNDXIDHLIFFWKNLRREKRKFSNTLPWWDTAKLAVKNELIYISSD
IKKGEKQRYETVNKKLKTLRKQISTPEINKEIALIENNIEIYERKLHKGALIRXKLPLLENEEXPTKAFFAFEKEKQKRD
AIFQVKTAEGNLTETPIQXIKEIHKFYLNLWGVAPNVCNDDIDNYLNTXNPITDDGEFDQLNKPINCDEIKIAIDQMNET
SSPGMDGLNVVIYKKLFNTIKYDLEELYNNIFXKGQLTNSMKTAXVKLIFKKGDKSEIKNWRPISLXNCDYKILSKVIXN
RFNVIINKVISKNQKCGLKGRXINEALYNIQASLQSAKQFNNKLTILAIDFEKAFDRTNPKFIIXICQKLNLPKTLIQWV
NIIYSNIKSKIEINGTFTPEIPIKRGIRQXCXLSMILFLIGMESXTXKIYNNPRIIGYKLNQIELKXEQYADDLTILTND
KNSIQPIFKELELYGRISDQKINITKTQVISNDAEAISKIQQLYPDINIVENIKILGITFNLXNQCNNLNWEKYMKHIIN
TLNINKRRKLTLRGKKXLINXLILPQINSIGEIIQLPKIFLNKINSALFNFLWFPTKWELMKREKFYASMNHGGLAIPNI
KIRLDAMKATRXYKLKQIERVAEIWHEWARFNLGSTMKIINKNLYSNSKPNATYPNDFFRELRHIFFNLNKQDYDWKNGK
TKDFYFGLIXNIALKTEIEINGETVPWQNICLNNKSISAFFNHIERDNSYKIXQNIILHGDWFTSKSFSNYHNGKLLIRR
CKFCKGSDDNIKHLLTRCNIINKIIDNIYTYINNISYGNYTKSDNLILYNGNVLLQKEELLPIKFINILKSHILQEKKRL
DIANIYIWNNDEFHRKTLWIVKTKFKIFLRRIMIKNGLTYTQQKFKLKDNYNPYI
>L1-2_VC_pol#LINE/L1 2185-7072 via tfasty with L1-2_CR_pol, 2 frameshifts and 1 stopcodon. [Volvox carteri]
MEATTTIKRQQGAMQGRPLRIATQNMQGLLAKHKDKIHAAAKQWIEMGLDVICLQETHHTNAHHQSLFERELSMAAATAH
SQGWRVVASSWSNSIHTGGVLTLVRQGLTATVETKPNKPSVQGRLTSCLLRWGGHCIEVCNIYVPTGTTHRAAALRQELI
SNILAATATQADTNNDTTLIWAGDFNFVENPALDSTAGEDGRRGDGPIAEMLRTAGPAMMDSHRQLHPLRHDYTHLYRAP
RPGGSRLDRIYVNQAVMPYVARTEIIQHTPSDHQPMVLHLLPRRVEQRGPGIRRVRMAFTAHEDLATSLEAWITDQCAAA
PSVEDNPAGLIEWWPAFKRRLATRAHQLNKTAQHRRLRPGARVQAALPAVQQARQRVDTDPGAQQPLQQLVDAQAALARA
HREDCSKEAMEARIHWLRAGERPSPAMTAFIQAQSADQQPAPVALQAQSGRLVTNPSQLPQVVADFWSEVSRAPNYICPQ
AQQEVLNSLAAANISLPAEADEQLGSRTITATELRKALKKSQPGKAPGWDGIPADIYRKFWSAIGTTMAGLLTAIGLTGQ
VPKGFLEGVLTVIYKKGDPKLPGNYRPITLLCSDYRLLTKVLANRLGPALGQVITPEQSAFLPRRLIGASVLFLRHLSHL
LRKQNRRGLLAFLDFAKAYDTVDRGFLLAAMETMGAGPQLCAWVRLLLSETRARAMVNGYKSKLVNMEAGVRQGCPLAPL
LYLFVAQALQCWLRSQDVGIKLQPADSQPVTACQYADDTEVALQGEDSVPSFLQAMDTFARASGQRLNLDKVELLWIGQL
NQQQAQPATQAGPQSAAPQQESIGGLKVVTTATALNLPIDNQPSPPQPDWMKRLGEAKRRLQRLSRFPLSAFGRATAASV
YGMQTVTWHMEHGGPPPNRTLDEIERLTARLVDRQQGPEDPGRRLTGVPKDLLTGHPSAGGFGLLPLQQHIQARHAVWAV
RFIIAALGLSNASCGPGTGGAAGTTGGTGGHGRADGGLHPWVRTLSAYMLLTHPAFQPWALTTASQAGPRLGGSDLPTDI
SRIVGALGHLPPLRDIETSPLSPGPWCWATALWGNPLLPNTGEADPDSLNRRPGLETHFVGIATCRKLQTVGDLVRVWDL
VVHTRVASLPRSTWPEWVRTHLDPSTPAPTRDRSATLAALKTLHGAINPAWLEAARAVETQQQQQPHRRHSCSHSRSQPQ
PQPQPQPQPPATAAATAAASAAATAAGTATTAANTTTATDTASAAAATAAATATDAAAxAATPTAAAREANGGGYGGSKH
PQQHSGDGYDPKAGRMADPGGTTTVPLTRLTVRLATQLQCGATEEKRGRLMAAFVQEALDPQETAPSSSAETSRFRATQA
RLWSGVRWENENKETLWRLAVDGIPLPRQHAPGPHGAERCGCGGFGNASNQHCSPRMHHFWECPVAQAVREQIDRHIQPS
QEAATGGITRKQLWLVQAPTGCEQAPWDVIALAALSAMEVGRCCLRAAGRRLERAANPATEQPEQAQQIQAQGPQQRRIT
DFFHLANGVRPHEGPPLNAPVLEDQTQGPIAGPGTATAAATAAATAQHTAAATPLEYARARAVVDFWARLRSFTALNVPR
RGWDGVGPHHPILSIVGGALRCAEAVDITT
>L1-1_NV_pol#LINE/L1 1254-5021 [Nematostella vectensis]
MILNLLSLNIRGLNMSRKRRKVFRWLHLQRKDIYFLQETFSSKHNESYWNAEWGANCFFSHGTTHSKGVMILFNPKLDIT
VKSSFSDPNGRFILLEVSLDGEDFTILNMYAPNDNKQQCDFYDKIAKVLKDAQSSNLIVGGDANCALSQLDRFGSDWGKY
KQNKKSVIKAIRSLQLSTSLKDPFRHIHPDEATYTWRNKSFTRQSRIDYWQISESLLNEVRECKIIDAASTDHSAICLSL
GRDPAKKRGPGFWKFNNALLKDESFVEKMREKIPVFKQKYTELHYDKGLQWEMLKMEIRSLCIQYSKRKRKDCRNKELDL
IRNVNSLQRIAEQAPTQENASKYYAQKQKLDNILEEKTRGCIIRSKSRWYEEGGKNSKYFLNLEKKNYTSKWIQTIELND
GTIVSEEKEILEAEKNFYETLYKSSLDKSNLPDDLDIFHTNENLRKLERLQAESCEGLLSPEECLEVLKNTQNNKTPGSD
GLSYEFYRFFWDQINSPLVESFNHAFRTGKMSVEQRRGVISLIPKKDKNKKKLENWRPVTLLNTDYKIATAAIAQRIKKV
LPAIIRPNQTGYIEGRFIGENIRLINDILYYTDQQKLSGIALFIDFKKAFDSVEWSFLRKALEAMNFGPDVVKWFSVFYN
QTSSCIINNGIASEFFSVQRGVRQGCPLSGILFAVAIELLVCAIQHDPNIKGITVNKNEIKYSIYADDLTVFLKDACSGE
KLFELLNKFKRVSGLEINKSKTDALWLGRDKEKRETPLGVNWPRHPIKALGCAFSYDNEMNDKFNFEDKAESLQKLLHTW
KGGNLTLLGRINIVKTLGLSKLVYSMTSLVSPPGFGKKIDSIIFYFVWNGKTHKIKRSTLIGEKKHGGLNMIDFNTFERS
LKLSWAKRFLSDSIAPWKIIPLHYLQKFGGTFMLFCNYDVSLLSTECHNVIPTFYTVFLKYWANIADIAEEQFGPSRRWY
NDIIWNNKNIKIGGKTVYYRKWHQAGITYIHDLYSARGEMIPISEFQTSHDLDCNFLTIMGVYNAVSHYVNKAAMADDEQ
PMDEVKAFNQKALLELGNLTCAAHRKLLVTAAFAAPTAEKRILDSGVPLTELEDVYALPFKVTSETFLNVFQYKIVHNIL
PSNSLLFKMNLSESPNCQFCNELHNLEHIFAKCRTAIEFWSHFLKWFRDKSSLEILPSPREILYGYKPKEKRFIGVNHAI
IIAKYSIFRNFSNKLAPSFEAFLSLFNDKLNIESGIARENHKEKQFNEKWKMFLK
>L1-1_ME_gag#LINE/L1 624-1388 [Macropus eugenii]
MEKEIQKLNGENSSLKGKIGQMEKKMQKLTEENNMIKIRIGQVETNDSMRQQESVKQNLKNEKIEENVKYLIGKRTDLEN
RSRRENLRIIGLPESHNEKKSLDSIFQEIIKENCPEVLDPEGKIVIERIHHSPPERDPKLKTPRNIVAKFQNYQVKEKIL
QAARKKQFKYQGDTVRITQDLAASTLKDRRNWNPIFCKAKELGLQPRINYPAKFSITFQARRRSFNEIRDFQSFLTKTPE
LNKQFDLQMKVSREA
>L1-1A_VC_gag#LINE/L1 130-2757  [Volvox carteri]
MLQTRAAKTADRPKIQTGRKTATATRPQTTQRKVKREEFTPLELNILASPTERLFVLCPETWELVAHWPPGSDISDVYAQ
SYGRLVEHIISKLKLWAKSADLEALEGPAVTKRRIFPMKDKRVAMEISVLMPPGSLARLTNSELLREGRLQLGGVEFYPG
QEPVNVELTVKGLDKIVPRRWEVSGLPLGITRQGVTAFLAMAYSRVSGRQWKREEFGFPCKCPFQADKWAVKLPAGNFNL
PAELPYTYGTPGDSTHCTGTLVATKVPLALEAAPAIIGCLPPARKGAQPKMTQIPESGPSRSNAGTVVNGTWAAIARTQR
GTTATAATGRTNAPEMARHNIIGPSPMPPLPAFSGPIHTVTHLGSREPVMELQVSGIQAAVAAQIPTPAAVEIGSTSAPR
PPPPPQSKGGPDLQPGPSSSRALPPQPNGSGGSGSKPATQPRGNNTEGSPGDAGWMRQEKRGKKTPIPDPQEARQETVVA
APHQAADPTPGATIAADAPPPTPPTAPTHSALGLETTHMEMEAEQTQAESDLADEGNPYSVLAELRDEEENPPGQTKAPG
AAATTPHPEQNTAPGAAATNPPLEQNTAPDAAATKPPLRRTTAPDAMSLRIEERAQEAANPPPGQPKQPQVAIVFGTPHK
AAAIQLTPIREQPWKPVAEQAGPANNAQTNREWPSPPPTQAAGKNTTMGSPKTQAAALFAQVEPIQLQMTRPMTRSTATA
AKAQLTHMAIVKKQRRPDLRDQARKDHFKKLTEPARTARRQSAELARQAKEAREARHREAGKQKRGDIWQANRKNRMAKT
GGATTGKTVEDIAMEEEAGARQGPEATEKEASDPGSPQAGSQISSLILQVPTVTQPDVETESPPGEGSSVSHTQQT
>L1-2_SBi_pol#LINE/L1 155-3664 via tfasty with SHALINE16_MT_pol, 13 frameshifts and 6 stopcodons. Not the best sequence. [Sorghum bicolor]
MTHLAWNCRGSGGSLRSSTMAHLSRLLVSTKAQVCFISETRNSTISKTSITNRFNLNDAFVVPSQGQSGGLWLLWKDEVD
VTVIDHNHHFIFALCTNKSTNQHYGLVCIYGDPHHRTTNAIWEQVLNFVAPNSNLPMLCMGDLNELMHANEKLGPTSADV
NRINDFCAYVKQCGFIDLGYSGPAYTWTNKRFSSVPTYERLDRCLGNAEWCMEYPTTTIYHLPMMYSDHAPILAVLNSQR
TRTNKPFRFENWWLMEKEYHDIAKQSWQRSSNRDFSQKTKYLAADLRKWRKKKPRKMTCLPDxKPNSRSTKPATFSAGPH
PPATLHDKHQDLMAKEETYHIQRAKKNWAIAGDRNTSFFHQAIVKRNRKNRITHLINPDGSHSTTPDNLLTLLSTISLIF
SPLRTLTSTCRxHPPHYSSLSNLTLIMPLTRACRRRSSHQRxNFQVYLLHSYLNEIHDIIKQMRSNAAPGPDGLNAAFYK
SAWQWTKEDIYKVVTDFYSHAHMPSDLNQTFITLSLKNxSSVPQDFRPISLCNVIYKIISKSLANRIKIILPNYISQAQS
AFVANRHISSNIIIMQEIIHSFNLNTWKDHSFILKIDLAKAFDRLEWNFISAALRRLGLNDHFINLIHACISSPTFAVLV
NDEPSDTFTSQRGLRQGCPLSPYLFVIAINELSIRLQQALQDSNLHGISLGRQCPRIHSLLFADDLSFVESRRSRSTGNK
EHPHDFCRQSGQTPNLPKSFIYFSKNVPTTIKNQIKGVFPVPDLQPNTMHLGHPMIFSHRDKNRAYNFISNKFFAKFGSL
KANNLNHAGRLIYIKSVLSSIPIYYMSTVLFSKAFIEKINSIIRRFWWAGVHGRKSDQSHCLSSWDDICKPTEQGGLGIR
DMELVNQSLIIHSAWNIATNKNPFLSDILKAKYYPSASFWNATDNGPRSIYWSSILQVRHHLTSNAIYQIHDGNSSIWSQ
PWCPIWNNIHDHLTLPVVNLLCHAKVSDLWVQGTQTWNHQLLSTTFSDQAVHAIEATPVVTPTDNDILRWTPTKDGICTT
KAAYSYLAHQQAHQLPSQWTQKHNxxCQQNPSKVWKSKSIPPILKTFAWRLIRRALATAERAGRYSIHIDKHCSYCGAIE
TDLHLFFKCNLPTQVWSTANPPFLTNNIPAEEDGVQLSLPFLITHNNTTDDIL
>L1-2_PTr_gag#LINE/L1 163-2316  [Populus trichocarpa]
MASNPKLQTLKANTTHSITKQPTNHHQNIQNTASLTQVRFLKSHESTNNQKSLSNSHLDPKQQPPPKHNRNIPSPKTQNN
HSFNISVPQIYFEGFPIWADYHRIKASFNKFGSVLKLYVSRRVNKSGSLFGFVTIASNFSDKVLLESVNDIWFEYHRLKA
NFARHYKKIPRENKAPDRSKPKTTIRVPISERDVRSYKEVLSEGKAEQILLPVASGPKDYFEKLSLDIEEEDYAWLKRCL
LGKIKKGSNYSSIRFGLIQHDIDFAGLRFLGASQVLVIFDNRDILMESWRKNNKCWDVFFEEVRPWVETDTTLNRMAWIT
ITNLPIIGWNCRCLTKILERSGQMIGYDKTTLKHFELSQLRILIGTQLDKVNKVIVLQLNNQTYQVKIEEMDQLHYPIAG
SISYTMDDFQTSLEQGDEDDEEDSVDVADGVDTDEDRAGVSPSVTRTLGGGSSGWENSDLAQDGDKLSTSDDSSLIIFNA
LHLDVVQDQHVASSLERFPEIMAYNLSFSDSSYIKSSPIPNALTVYTGRGTPILREDARNPAAALGLDSLVLAQIXSPVY
GSGSQSPSDVLSISFGSNNDLALQSTYNPQAVVILEPQHMNHPVILHSDANTKESATALSAKTRRKLRRTKMITADGSLN
ETVNKSEMDTEDSTIQRCNRRNLLAHGENNKPSEGDEVCLMLEIGEALQIEKPHNLDDFTSYINQQRRKEKADWEASQ
>Kiri-3_DTa_pol#LINE/L2 1288-4122  [Drosophila takahashii]
MSILMQSVSNNNIASSLLNILCKQREGLRIVHINAQSLVRKMDEFRELFVGSHVDVICVSETWFVNGSSDVRFMCEGYVL
FRADRVGHAGGVAIYISKKFTFKCIHVSQDDSTVESAFIEITDRKCKNKALICCIYRPHRQTHFGDLMRTLAVLSVGYQN
VIITGDLNSNMITENLVHYDFNSIGLKLVNSLAPTYFTNTXSSLLDVFFVSDLSKVLLYDQICVPAFSKHDLIFMTYDFI
SDNMPSVISYRDYKSLNYDNLQAEFDHYDWTLIYNLTSAEDQLLFLNSNVRQLFEKCVPARTKILKPADQPWFTLEIKGL
IRLRDAAYKRWKRYRTDHLYNIFKQIRTDVTRKIAVSKRSFYNHKFGNAYTSGQVWKELRGMGIGKQTQAAKSDLDVDAL
NEKFARVNFSSPPQNMYLNSTTICDNIFSFMCVRPSDVLECLLSVKSNAEGLDNISPKFIKILVPKLIYHISHIFNTIFT
TSTFPDVWKRAKILPIPKPKNEFRPISILPFLSKSFERLVAQQIQSYLENNSFLSNKQSGFIKNRSCTTAILKISEDIRQ
QIDESKVTLLTLLDFSKAFDSIDHVILCTKLRTLYSFSPSAIKLLQTYLTNRLQAVVSGNLRSDLLPLAQGVPQGSVLGP
LLFSLYINDLPKCLSDCDVHLYADDVQLYVSRPLGQINECIRISNNEIQKISNWAEANGLHLNPSKTKCLFIYKRHISPI
LLPKVNVNNVAVNYVERATNLGIEFNSTLTWDDHITKATGKTYAMLRQLSVTQNLIPQNIRMLVAKACIIPTLFYGLEIF
ASSDAASLRKLKVAFNSIARYIFNLDRTAHVTAYSSKIFELSFESWIKFRTLLFLHKLIFRKEPQYLTELLQMSVSARTN
NIISKRLKLGSAEKHFFIQTVRHWNNLPNNIKTLKIIQNSKLNYFPTFKAHSNFNFNFIYNYFSS
>ATCopia96#LTR/Copia 64-4496 Wised via estwise with ATCopia22 protein [Arabidopsis]
MAAMNPSTNPTTTEVRRTISPYDNPGAVISHPLLQATNYDEWVCSMKTALCSRKKFGFLDGSIARPAENSPDLEDWWTIQ
ALLVSWIKMSIDPSLRSNVSHRDVAKDLWDHLKKRFSVTNGLRIQQIKAELACCKQRGLAIETYFGKLTRIWDSMANYRP
LRVCKCRKCECDLGTLQEKDIEEDKVHQFLFGLDDTHFRTVRSSLVLRVPIQSMEEEYNMVRQEEDMVRNGIKGVEXSSE
VNAFAVHTTTPFQRDERDKSVFCKLCNRAGHSSDSCYGVIGYPEWWGDRPRSRSTSSCGRGRGGSNRGAGKSRGSTSYVN
AVGVNEPTGYAAANYVITDNDRDGVTGFSDSQWKVIKNLLNANTSKVYESEKLTGTYSFPSWIMDTGATHHLTGQLEILT
DVKDIQPVGIVLADGRQRVSVKEGSVRLGPNWTLKSVYYVDGFQSNLISLCQLMDENRCVVQLADHFLVVQDRTTRTVIG
VSKQKGGTFLFWSLESVTSVEVRDEKSFELWHQRMGHPSAKVVGLLPLISNVISSEILNKACDICLRAKQTRLSFPISEN
KTKRIFDLIHCDLWGPYRTPTHSGARYFLTIVDDYSRGVWLYLLNEKSEAPNVLKNFIAMTERQFETQVXVIRSDNGSEF
VSLNEFFKKQEIVHETSCVGTPQQNGRVERKHRHILNVARALQFQANLPIEFWGXCVLRAAYLINRTPSMVWKGMTPYER
IYNAKPVYDHIRILGNTCYAHDQSHGGDKFASRSRRCVFMGYPYGKKGWQLYDLEKCQFFVSRDVVFFEHEFPFKSDVAE
EFVEEAENFNIASLYVEEEETERRLGQLGQLNAESPLVTTNSDGLPISPIRNNEEAIISENQNDVAVETSRHVPLRNLPS
SSSSEIPRSTTSRPPPLTSPQVQTKKSFPTEQLGRGKRQRTHSVKLKEFVIETGNPKTKKNKSTSEYLIANYVDCERFSE
SHKAYMVAITQGVEAKSFKKAMEDDRLKGAMGSXIDSQERNHSLTIEDLPKGKKAIGCKWVYKIKYKSDGTLERHKAKLV
ALGNKQVEGVDYGXTFAPVAKMGTVRLFLDTAVKNKWDVHQKDVYNVFLHGDLEEEIYMKLPSGFKATDPNKVCRLRKSI
YGLKQSPRSWFAKLSTALKXFEFEQNLSDYSLFTKDANGESLHVLVYVDDLTXVMNDFKDYLLSCFHMKDLGQLKYFLGI
EVARNSTGMYLCXRKYALDIISDVGLLGAKPVAFPLETNNDLSLSKSAFLNNPEPYRRLVGRLIYLAVTRPDLAFSFHFL
ALFMQKPREDHWGAALRVVRYLKNNPGQGILLRADTPFQLSGWCDSDYASCRLSRKSVTGYFIXLGGSPISWKTKKQKTV
SRSSEEAEYRALAYLTQELIWLKTILSALGVKHNQPMNVRCDSKAAIHIATNPVFHERTKHVEVDCHFVREEVITKNICL
LHVKSESQLADIFTKPLGRQEFYRFCFKLGITDLHAPT
>ATCopia90#LTR/Copia 316-4878 Wised via estwise with ATCopia11 protein [Arabidopsis]
MMTTDQYDNHYFLHNSDHAGLVLVSDRLTTGADFHSWRXSVRMALNVRNKLGFIDGTILKPNETHKDFGSWSRCNDMVAT
WLMNSVSKKIGQSLLFISTAEGIWKNLMSRFKQDDAPRVYEIEQRLSVIQQGSMDVSAYYTELVTLWEEYRNHVELPVCT
CGKCECNAAALWEKLQQRSRVTKFLMGLNESYEATRRHILMLKQIPTIEDAFNMVTQDERQKNIKPVSKIDNVVFNTSDN
NQLSYYDGSVQNQNQNVYQGPLDNNVYAAMQNQYIPRAPRPVCTYCGQTGHVIQKCFKKHGYPPGYIPGFKSNGGYQNQP
TRPFTPFFNQNLDPRAQFSNSRPTTQHAANMMNGNQQAISAPNVDVSQMNKEQMQSLLQQLNSQVQLSENQVPIPLVASV
TQNGVMDSQSFSGSVSFPSTSLRFENNKLTFQHQCLSSLSNQIPQGSWIIDTGATSHVCSDLTLFNDIVTVTGVTVSLPN
ATRVEIAHTGTIHLSSSLILHDVLHVPSFKFNLIFVSSLLKHSNASAHFFPDFCYIHESIQNLMIGKGVLLHNLYILELD
SPHPATHSSLSAPHFSGSLMVDGHLWHQRLGHPSSDKLKLLSGTLSMPKNSSLVESHCPVCPLAKQKRLSFESHNHMSSS
PFDLIHLDVWGPFKRESVEGYKYFLTIVNDHTRVTWIYMLRNKSDVSKCFPVFLKYVSTQYNAILKRIRTDNAPELAFTD
ILEQSGITHXFSCPYTPQQNSVVERKHQHLLNVARSLMFQSNLPLAYWSDCILTSVFLINRIPSKVLNNLTPYEMLTKKA
PDYSFLKSFGCLCYVSTLQKDRHKFSPRADKCVFLGYSSGYKGYKVLHLDSNIVSVSRNVIFHEKDFPFKTATHSIPASD
IFDKCVLPASTPFDIDSPSHIHHDASDIHTPALHTTPHSSVTDHSQEAVTSDTTTVSLPTVRPKRTSKAPGYLSDYHCAL
IQTSSPPEKVTTTPYHISSFLSYDQFSPDYQSFICNISIETEPKIFKQAIISEKWTAAMGVELGSMELNKTWSVVSLPQG
KNVVGCKXVFTIKYNADGSIERYKARLVAKGFIQQEGVDYFDTFSPVAKLASVKLLLDLTAKKGWSTSQMDISSAFLHSD
LEEEIYMSLPEGYTPPDGVPLPPNAVCRLHKSIYGLKQASRQWYKCLSAVLLDDGFIQSYADNMLFVKVTGTSIVALLVY
VDDILIVSNDDEAVRSVKAVLGKHFKTKDLGEAKFFLGLEIARNADGISVSQRKYCLDMLADSGLLGCKPKSVPVDPKVP
LTKETGTLLENARPYREIIGRLLYLCITRPDITYAVNRLSQFLSCPTDVHLQAAYQILKYLKNNPGQGLFYSSQPDICLN
GFADADWGTCLDTRRSTSGMCVFLGHSLITWKSKKQDIVSSSSTEAEYRSMAVTTKELLWLSQMLKDLHIQVDSSAKLFC
DNKSATYIAINPVFHERTKHVEIDCHITRDQVKNGFLKVLHVATENQLADIMTKPLHPGPFYSLLSRLSVSSLFNPSDDS
A
>Barbara_TM_env#LTR/Copia 4991-5977 [Triticum monococcum]
DFYETVLLDKKPIVCDMRWVDWTYIKENEEHYPGVQDSFIACGVADFVGQKLTKWNEELIMQFYSTAHFYPDGRITWMSE
GTRYQSTVAEWAQIINAPEEQDDDLDIYAKKKMDHNSMSNMCKEIPNEALDTFKFGSVHYLLSGLPTINWILRHTLLPKS
GDHKMIIGHAINLLNVFDVPQKFKVMSLIVETIKRTAADQKRSYGYAPQIQELINSKMGTGIYLLDKEHLPIHLDFEDNQ
VVMTENEPSSAQAFAKKEKARKEKAAKMPTQEEASEYFLKTKQEQLGYLIASTLRIEQSLATLTQNQQSLERIMEQKFYD
LDVKVTEV
>Claudia1_TM_env#LTR/Copia 4036-6969 via tfasty with Maximus_p4, 4 stopcodons. [Triticum monococcum]
MMHELKEAFHKKRDEAKGSREHMKLLAAKCVQAYNEAEKRKALGRPSIDPKMAAKKKPTVAPAEASRREEPRIVFPASMI
GVKPKVPTVASELKKTRIAKAEARKHKNKNTTDDAPQTKKRKTKKKNQAAPTEPLVVEPISVARPASALQERRLTVHEPA
STEAPEAEDIPAIDPTVAEDIGPQDNVQDDEVLPQIEHNMVSSPVLTNSELISIVRPLMPIAQDDSWADHHQVSPRQEES
PRTPPTQVTTPVLDDEDFVAxTTPSPQASPVFRRLRKGPRPQVTLSSVPEGEEHHHLVSRQVFPEASPTANISESEANAA
KDIPTASADEQEEPREEEECVATPPSNPEVVLEENVSDPPTTQVETENTKAATNNSTKANDIVMAEANVAPEANVVPEVN
APEANAAPDANLxPEVNATGTAHVPPPRPHTIEQAFDRGQLVTVRWPILVPPPAAGPQFDYHVEHGPQVQKPKPRLPRFP
GTATSPGSFNANGFITNNTFFDSDKNPYSKPRISSDRFWSYQQRSYYSCVLYDQGRIFPHTRLDREAIAGLPCLEEALDY
FRDAGLLNFVTDKEHWNEELLLQFYATLHIRGYNRDPKTWILEWMTGNTHHEAKALDIIELTGLPTPGELFEPGCQLHRN
ALESIFHKPEPNMSQMLSMMKPLPHDVEYPRELFVEDLEYLPxRIYHIIRQTLWPIKGHSSAAKLEGAMKTLVFYIFNGI
SFNAQDFFIRQLVASGSDLFGLKFYASWVMHLIKLHSAVYYQPSARNHLIFLPEVDLSVEAIYLERTKEPIYLHNADHQS
FTQPIEGVQAITRVYPLAGNTRAPHCAHAKATESTIAQRPRKRSRVLNDREILVALHQQHDKHHGWLKCQMQSLLVYVNR
ICNLATKNAFVNHETCRRSWKSLTLLSAEVDLQDNGFTQRFKFDSTPPRNVVLRQTPSLEDSDYSSSAATVNARVIDDxD
DATSPPPTSAHINTAPSS
>BARE2_HV#LTR/Copia 1270-5237 Wised via estwise with TRSiTERT0010013 protein (BARE2_HV not in RepBase(anymore?)) [Hordeum vulgare]
MAHAKVTLNFNTFLEKAKLKDDGSNFVDWARNLKLLLQAGKKDYVLNVALGDEPPAAADQDAKNAWLACKEDYSVVQCAV
LYGLEPGLQRCFERHGAYEMFQELKFIFQKNARIERYETSGKFYGCKMEENSSTSEHVLKMSGYSNRLAELGIELPQEAI
TDRILQSLPPSYKSFVLNYNMQGMNKSPGELFAMLKVAESELRKEHQVLMVNKATSFKRSGKGKKGNSKKIGKPVANPTK
KPKAGPKPETKCYYCKGMGHWKRNCPXYLAGKKAAKEKSGIFDIHVIDVYLTNSRSSAWVFDTGSVAHICNSKHELRNKR
RLAKDEVTMRVGNGSKVDAIAVGTVSLQLPSXLVMNLNKCYLVPTLSMDIISGSCLLXDGYSFKSENNGCSISMSNIFYG
HAPNVRGLFILNLDSDNTHIHNIETKRVRVNNDSAMFLWHCRLGHIGVKRMKKLHTDGLLESLDFDSLDTCEPCLMGKMT
KTPFSGTMERASDLLEIIHTDVCGPMSAEARGGYRYFLTFIDDLSRYGYVYLMKHKSETFEKFKQFQSEVENHRNKKIKF
LRSDHGGEYLSFEFGAHLRQCGIVSQLTPLGTPQRNGVSGRRNRTLLEMVXSMMSLTNLSLSFWGYALETAAFTLNRAPS
KSVETTPYELWYGKRPKLSFLKVWGCDAYVKKLQPEKLEPKAKRCVFIGYPKETVGYTFYLKSEGKVFVAKNGAFLEKEF
LSKXLSGRKIELDEVVEPLIPLDGGARRGETPVVAALVEEQVDDDDHETSDQVTVGPRKSTRXRTAPERYGNPVLTIMLL
DNNEPANYEEAMVGPDSNKWLEAMKSEIGSMYGNKVWTLEVLPEGRKAIXNKWIYKKKTAADGNVTVYKSRLVAKGFSQV
QGIDYDETFSPVAMLKLVXIMLAIAAFYDYEIWQMDVKTVFLNGFLKEELYMMQPEGFVDPKNANKMCKLXRSIYGLVHA
SRSWNKRFDQVIKAFGFIQVVGESCIYKKVSGSSVAFLILYVDDILLIGNNVELLESIKVYLNKSFSMKDLGEAAYILGI
KIYRDRSKRLIGLSQSTYLDKVLRKFKMDQSKKGFLPVLQGIKLSKAQCQATAEDRKTMSFVPYASTVGSIMYAMLCTRP
DVSLAISMACRFQSNPGVDHWTAVKNILKYVKRTKEMFLVYGGXVKGYADASFDTDPDDSKSQTGYVFILNGGAVSWCSS
KQSVVADSRCEAEYMAALEAAKEGVWMKQFMTDLGVVSSALDPLTLLCDNTRAIALAKEPRFHNKTRHIKRRFNLIRDYV
EGEDVNICKVHTXLNVADPLTKPLPQAKHDQHQNCMGVRFITM
>ATCopia83#LTR/Copia 132-4623 Wised via estwise with ATCopia26 protein [Arabidopsis]
MSTELALTTSSSTTTQPRRTISPYDLTSGDNPGTLISKPLLRGPNYDEWATNLRLALKARKKFGFADGTIPQPDETNPDF
DDWIANNALVVSWMKLTIHESLATSMSHLDDSHDMWTHIQKRFGVKNGQRIQRLKTELATCRQKGTPIETYYGKLSQLWR
SLADYQQAKTMEEVRKEREEDKLHQFLMGLDESMYGAVKSALLSRVPLPSLEEAYNTLTQDEESKSLSRLHDERNDGVSF
AVQTTPRTRSLTKNKDSAIVCSHCGRLGHLAENCFKLVGYPPWLXEKMRRNATSSSRNQSASMGRGSSVVPATSFKGKQS
FGRGASANHVANIGESTTAATSSMSGSQLTEADRVGISGLNDEQWKQLRQMLKERNFNSTNTKSSKFFLESWIIDSGATN
HMTGTLEFLRDVCDMPPIMIKLPDGRLTTSTKHGRVYLGSSLDLQEVFFVDGLHCHLISVSQLTRAKSCVFQITDKVCII
QDRITLTLIGAGKQQNGLYFFRGTETVASMTRMDSSSQLWHCRLGHPSSKVLKLLSFSDSTGHAFDSKTCEICIKAKQTR
DPFPLSNNKTSSPFEMVHCDLWGPYRTTSICGSNYFLTLVDNYTRAVWLYLLPSKQTAPMHLKNFISLVERQFSTKIKTI
RSDNGTEFVCLSSFFVDHGIIHETSCVGTPQQNGRVERKHRHILNVARALRFQARLPIEFWSYCALTAAYLINRTPTPLL
QGKTPFELLYNRPPPVNHIRVFGCICYVHNQKHGGDKFESRSNKSIFLGYPFAKKGWRVYNFETGVISVSRDVVFRETEF
PFPASVFDSTPDSQLSPSNADQSFFLPSELQAPTPVSITTTLELTQSSSSTNLNDDNFHIPSDESSSVNEMSDNEDLNSP
TTNESSPFLSPASPSLPLSPASLSLPLSPAAPSPSLPKIAEPEPEPELLGKGKRKKTQPVRLADYATTLLHQPHPSVTPY
PLDNYVSSSQFSAAYQAYVFAISLGIEPKSYKEAILDENWRCAVSDEIVSLENLGTWTVEDLPPGKKALGCKWVFRLKYK
SDGTLERHKARLVVLGNKQTEGIDYSETFAPVAKMVTVRAFLQQVASLDWEVHQMDVHNAFLHGDLDEEVYIKFPPGFGS
DDNRKVCRLRKALYGLKQAPRCWFAKLTTALNDYGFIQDISDYSLFTMERNGIRLHILVYVDDLIITGSSLDVITKFKGY
LSSCFYMKDLGILRYFLGIEVARSPAGIYLCQRKYAIDIITETGLLGVWPASHPLEQNHKLALAFGDTISDPSRYRRLVG
RLIYLGTTRPELSYAIHMLSQFMSDPKADHMEAALRVVRYLKSSPGQGILLRSNTPLVLIGWCDSGFDSCPITQRSLTGW
FIQLGGSPISWKTKKHDVVSRSSAEAEYRAMADTVSELLWLRALLPALGISCNEPIMLYSDSLSAISLAANPVYHARTKH
VGRDVHFVRDEIIRGTIATKHVSTTSQLADIMTKALGRREFDAFLLKLGICNLHTPA
>ATCopia56#LTR/Copia 55-4131 [Arabidopsis]
MSSGRAEVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAEVEDSTTEISDGGNQDPETATSKLEDKILKEKRGKAR
STIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQRLYGYKMSENMTMEENVNDFFKLISDLENVKVVVP
DEDQAIVLLMSLPRQFDQLKETLKYCKTTLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKNKS
RSKSKGAGKTCWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTAQVTDAAALVVSRALLGFAEVTPDTWILDTGCSF
HMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNEDGSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESKKGI
LTIFKNDLTVLTGKKESTLYFLQGTTLAGEANVIDKEKDETSLWHSRLGHIGAKGLQVLVSKGHLDKNMIKDLQFCEDCV
YGKTRRVSFGAAKHVTKDKLDYVHSDLWGSPNVPFSIGKCQYFITFIDDFTRRTWIYFIRTKDEAFSKFVEWKTQIENQQ
DKKLKILRTDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQNGVAERMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFL
INKSPSSSIEFDIPEEKWTGHPPDYKILKKFGSVAYIHSDQGKLNPRAKKGIFLGYPDGVKGFKVWLLEDRKCVVSRDIV
FQENQMYKELQKNDMSEEEKQLTEVERTLIELKNLSADDENQSEGGDKSNQEQASTTRSASKDKQVEETDSDDDCLENYL
LARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGK
RVIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGN
LDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDD
MLIASQNKDQIQKLKESLNREFEMKDLGPARKILGMEITRNREQGTLDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKL
RAANEKTLARDAEYMKSVPYPNAIGSIMYSMIGSRPDLAYHVGVVSRFMSKPSKEHWQAVKWVMRYMKGTQDTCLRFKKD
DKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQDA
VEVMCDSHNAIALSKNSVHHERTKHIDVRYHFIREKIADGEIQVVKVSTTWNPADIFTKTVPVSKLQEALKLLRVSSN
>ATCopia51#LTR/Copia 37-4214 [Arabidopsis]
MAPAYPFPDNVHVSSSVTLKLNDSNYLLWKTQFESLLSSQKLIGFVNGVVTPPAQTRLVVNDDVTSEVPNPQYEDWFCTD
QLVRSWLFGTLSEEVLGHVHNLTTSRQIWISLAENFNKSSIAREFSLRRNLQLLTKKDKSLSVYCRDFKIICDSLSSIGK
PVEESMKIFGFLNGLGREYDPITTVIQSSLSKLPAPTFNDVISEVQGFDSKLQSYDDTVSVNPHLAFNTERSNSGAPQYN
SNSRGRGRSGQNRGRGGYSTRGRGFSQHQSASPSSGQRPVCQICGRIGHTAIKCYNRFDNNYQSEVPTQAFSALRVSDET
GKEWYPDSAATAHITASTSGLQNATTYEGNDAVLVGDGTYLPITHVGSTTISSSKGTIPLNEVLVCPAIQKSLLSVSKLC
DDYPCGVYFDANKVCIIDLTTQKVVSKGPRNNGLYMLENSEFVALYSNRQCAASMETWHHRLGHSNSKILQQLLTRKEIQ
VNKSRTSPVCEPCQMGKSTRLQFFSSDFRALKPLDRVHCDLWGPSPVVSNQGFKYYAVFVDDFSRFSWFFPLRMKSKFIS
VFIAYQKLVENQLGTKIKEFQSDGGGEFTSNKLKEHFREHGIHHRISCPYTPQQNGVAERKHRHLVELGLSMLYHSHTPL
KFWVEAFFTANYLSNLLPSSVLKEISPYETLFQQKVDYTPLRVFGTACYPCLRPLAKNKFDPRSLQCVFLGYHNQYKGYR
CLYPPTGKVYISRHVIFDEAQFPFKEKYHSLVPKYQTTLLQAWQHTDLTPPSVPSSQLQPLARQMTPMATSENQPMMNYE
TEEAVNVNMETSSDEETESNDEFDHEVAPVLNDQNEDNALGQGSLENLHPMITRSKDGIQKPNPRYALIVSKSSFDEPKT
ITTAMKHPSWNAAVMDEIDRIHMLNTWSLVPATEDMNILTSKWVFKTKLKPDGTIDKLKARLVAKGFDQEEGVDYLETFS
PVVRTATIRLVLDTATANEWPLKQLDVSNAFLHGELQEPVFMFQPSGFVDPNKPNHVCRLTKALYGLKQAPRAWFDTFSN
FLLDFGFECSTSDPSLFVCHQNGQSLILLLYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPPRYFLGIEIESYNNGLF
LHQHAYASDILHQAGMTECNPMPTPLPQHLEDLNSEPFEEPTYFRSLAGKLQYLTITRPDIQYAVNFICQRMHAPTNSDF
GLLKRILRYVKGTINMGLPIRKHHNPVLSGFCDSDYAGCKDTRRSTTGFCILLGSTLISWSAKRQPTISHSSTEAEYRAL
SDTAREITWISSLLRDLGISQHQPTRVFCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVALGLIETQHIPATIQLADV
FTKSLPRRPFITLRAKLGVSASPVSPTPSLKE
>ATCopia63#LTR/Copia 14-4060 [Arabidopsis]
METTMQQVIPIFNGESYGFWKIKMITILKTRKLWDVIENGVTSNSSPETSPALTRERDDQVMKDMMALQILQSAVSDSIF
PRIAPASSATEAWNALEMEFQGSSQVKMINLQTLRREYENLKMEEGETINDFTTKLINLSNQLRVHGEEKSDYQVVQKIL
ISVPQQFDSIVGVLEQTKDLSTLSVTELIGTLKAHERRLNLREDRINEGAFNGEKLGSRGENKQNKIRHGKTNMWCGVCK
RNNHNEVDCFRKKSESISQRGGSYERRCYVCDKQGHIARDCKLRKGERAHLSIEESEDEKEDECHMLFSAVEEKEISTIG
EETWLVDSGCTNHMSKDVRHFIALDRSKKIIIRIGNGGKVVSEGKGDIRVSTNKGDHVIKDVLYVPELARNLLSVSQMIS
NGYRVIFEDNKCVIQDLKGRKILDIKMKDRSFPIIWKKSREETYMAFEEKEEQTDLWHKRFGHVNYDKIETMQTLKIVEK
LPKFEVIKGICAACEMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEV
ITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQNGVAERRNRTLVEMARSMIEEKKL
SNKFWAEAIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSVDHLKVFGCVCYIHIPDEKRRKLDTKAKQGIFVGYSNESK
GYRVFLLNEEKIEVSKDVTFDEKKTWSHDEKGERKAILSLVKINSQEQGGGNDLNAHIDQVSNAFNQLHISSRGVQNSHE
EGEESVGPRGFRSINNLMDQTNEVEGEALIHEMCLMMAEEPQALEEAMKDEKWIEAMREELRMIEKNKTWEVVARPKDKN
VISVKWIFRLKTDASGEAIKRKARLVARGFTQEYGVDYLETFAPVSRYDTIRTIMAIAAQQGWKLFQMDVKSAFLNGDLE
EEVYIEQPPGFIEEKEEGKVLKLHKALYGLKQAPRAWYGRIDGYFIKNGFERSINDAAFYVKKTSKEILVVSLYVDDIIV
TGSNVKEIERFKEEMKNEFEMTDLGELSYFLGMEVNQDDEGIFLSQENYAKKLLKKFGMQECKSVSTPLTPHGKIEEVLS
EKLEDVTMYRSMIGGMLYLCASRPDIMYASSYLSRYMRSPLKQHLQEAKRVLRYVKGTLTYGIHFKRVEKPELVGFSDSD
WAGSVEDKKSTSGYVFTIGSGAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVNEIGFKAEKGIRIFCDNKSAI
AIGKNPVQHRRTKHIDIKYHFVREAQQNGKIKLEYCPGELQIADILTKPLNTTRFEVLREELGVTMKP
>ATCopia77#LTR/Copia 115-4507 Wised via estwise with ATCopia22 protein [Arabidopsis]
METRRTISPYDLTAADNPGAVISHPLFKGSNYDEWSCGMKTALCSRKKFGFLDGSIARPAEGSADLDDWWTIQALLVSWI
KMSIDSSLRSSISHRDVAKDLWDNLKKRFSVTNGPRIQQLKAELACCKQRGLAIEAYYXKLNQIWDNMAHYRPVRVCKCG
KCDCDLGFLQEQDRESDKVHEFLSGLDYSFRTVRSSLVSRVPIQSLEEVYNVVRQEEDLKTTVHHYEDSSQVVAHAVQTK
SRPISDRIDAFERAVVCKHCNRSGHASNNCFAVVGYPEWWGERPRSRVVNGRGKGVTPGAASVGRGRHINVNAVHVSQQP
QTEQANYVITDADRDGVSGFSDVEWRRLKVLLNGGASTSTEKLSGKSLTSSWILDTGASHHLTGNFDLLTSVRDMDPVLV
ILADGRQRISVKEGYVVLDSHLVLKSVYFVEEXTTDLIVVGQLMDENRCVVQLADQFLVVQDRVSRMVIGXGRREAGTYF
CKTELAASVRTQDDKSYELWHHRMGHPCAQVVGSLKNVTVSIRSDILNKACDVCLRAKQTRSPFPISINKTTQAFELIHS
DLWGPYRTISHCGARYFLTLVDDFSRSVWIHLLNDKTEAPTWIKNFIAMVETQFSTRVKSFRSDNGTEFTSLASYFRQQG
ILXETSCVGTPQQNXRAERKHRHILNVARALRFQGHLPIQFWGECILTAGYLINRIPSSVLNGLTPYEKLYKKEPDYTHL
KVFGSLCYAHNQGHKGDKFESRSXKCVFVGYPYGKKGWRLYDCETEEFFISRDVVFCEDQFPFDKSSSSSASPVHEEEEE
LWASFSMNPLAEIEDRPDKGKSPLTDSSPSSLSSPDTNIASSSSTSLSTPPSTSSDSSSSPPTSTTQSDNSDQGLTTLEA
TSNSTNPVPPSSNLLGRGKRPKIPSVRLNNYVVNTAHGKLLNKSGKTQYPIANYVSCTRFSETHRVYLAAITENIEPKSF
KSAMENERWKKAMGTEVGASEENETWTLENLPPGKRAIGSKWVYKIKYNSDGTIERYKARLVALGNKQIEGEGYGETFAP
VAKMGTIRLFLKVAAGNDWPVYQMDVYNAFLHGDLEEEVYMKPPPGFYPKDEQKVCRLRKLIYGLKQAPRCWFEKFTSSL
RDYGFQQTHADYSLFTFDRDGIQIRLLIYVDDMILTGNNDASLEEFKVYLSSCFKMKDLGPLKYFLGIEVSRNKSGFYLS
QRKYALDIVTETDMLASKPASFPLEQNHQLALSTSPLLVDPSPYRRLIGRFIYLATTRPDLAFCVHTLAQFMQQPREDHW
HTALHVVRYIKGTAGQGILLSSANDFKVNGWCDSDWSSCPITRRSVTGYFVQLGQSPISWKTKKQDTVSKXSAEAEYRAI
SHLRDELLWIKKVLLSMGVRHDQPMNIFCDSKAAIYISTNPVFHERTKHIENDCHVVRXEIQKGTMSPHHVSTTQQLADI
FTKPLGRQAYELFRSKLGILDLHAP
>ATCopia71#LTR/Copia 231-5185 Wised via estwise with ATCopia75 protein + both term extended with ORFs [Arabidopsis]
MGSTPLRPSFLDATSNNFNHHNDVDRQSVMDHYDNPFFLHSTDHAGLQLVTDRLTSGADFHSWRRSVRMALNVRNKLGFV
DGTISKPPPNHRDSGSWSRCNDMVATWLMNSVSKKIGQSLLFMSTAEGIWNNLMSRFKQDDAPRVFEIEQRLSSIQQGSL
DVSAYYTELITLWEEYKNYIELPVCTCGKCECNAAVLWERLQQRSRVTKFLMGLNEAYEQTRKHILMLKPIPSIKEAYNI
VAQDXQRVVKPMIKTDNVAFQTSESYDGNSYQGEQPEFVAAYNAYRPKSNRPLCTHCGKLGHTLQTCFQVHGYPPGYKIP
GQGNTQGNKASYNPRGQTDFNSKPVFRPQANNMPEQRTVANVFTGQLPASDTVPYYPSPAMNAVNLDVSRLTQEQAQTLI
SQLSSHAQVPVSESLTPQFPTITEHGIMAVQSSSGTVFNISSNLRYENNNLTYNHQCLSSLHTALPNDAWIIDSGATSHV
CCDFSKFKETSLVSGITVALPNGISLPITHTCTIHLSDSLVLHNALFVPSFRFNLISVSTLLRDNKCFAHFYPTSCFLQE
CSRGWMIGSANLHHNLYILNLQSLNTPVASSSVINFCGSLSADGNLWHQRLGHPSTAKLELLSDCLSLNKSALASPHHCS
VCPLAKQKRLSFPFNNNVSSNPFDLVHLDIWGPFSVESIEGYKYFLTVVDDCTRVTWVXMMKYKSDVLQIFTNFIKLVDT
QYQIRIKAIRSDNAPELKLTELIKENGMIHYFSCAYTPQQNSVVGRKHQHLLNVARALLFQSNVPIIYWSDCVSTVAFLV
NRIPSVLLNNVTPYEKLLKKKPTYASLKIFGCLCYASTLQKDRNKFTLRAQPCVFLGYPSGYKGYKVLDLDSNVISITRN
VVFHEQIFPFHNKEKYQTDFFSHTILPNPVPFISESSHPSSETIIPAASHTPAASASETIVPAASHTPDASASETIVPAA
SHTPAASASETIVPAASHTPAASASNNEISESVLPAASLTEIFKTAVPSTVVNETYDNDAFVRDLIESEKGNVASSSSSS
LPQRETRLPNENVPVISNIKSVSLPVERTKRQTRAPSYLSEYHCALAQISTPLPSNHTTPYPLSSVLSYDLFKPTFCSYI
LSYSLEIELKTFKQAIVSDKWKGALNEELQAMEQNKTWSVTSLPPGKNVVGCKWVFTIKYNSDGTVERYKARLVAKGFTQ
QEGVDFNETFSPVAKLTSVXMMLGLAAREGWELSQMDVSNAFLHSTLDEEIYMSLPQGYTPGTSEPLPPNAVCRLHKSIY
GLKQASRQWNQLFTSVLLTNGFIXSQSDTTLFVKFTETSFIALLVYVDDIAIASNNADDLKSLKMVLAKAFKIKDLGQLR
FFLGLEIARTSKGISVCQRKYTLDLLEDAGLLACKPSVVPMDPYVTLSKDTGVPLVSATPFRELIGRLLYLTITRPDIAY
AVHKLSQFIQAPTDVHLQAAHRILKYLKDSPGQGLFYSATTDLCINAFADADWGTCPDSRRSVSGICVYLGTSLISWKSK
KQQVARRSSTEAEYRSLADVTREILWIQQLLKDFRVTVTATAKVFCDNKSAIYIATNPVFHERTKHIEIDCHTTRDQIKL
GNLKLLHVTSENQLADILTKPLHTRIFYSLLTRMSLSNLFNPTVLDSKVCGG
>Copia1_DM#LTR/Copia 126-4085 Frogger product similar and fragmented. [Drosophila melanogaster]
MSVSIQIEKLGDDNYDVWSILMRSVLITADLWKVVCGQYVKPEDGSEDSERWNMLDQKALASLFLNLKETQLMHIKACTT
SADAWKKLCDVHLPGGPIRKVQLYQKLSRLRMLEGDNVVQYVNKFAETVNKLAEMDITINDELKSIMLLSSLPNSWENFV
VAIETRDTLPTFETVKVKLLEEGARKQERDDREGSVQAVYVHTKLHGTAKQKQREENNLEKHSFKGKCYICEKFGHRARE
CPNKGRHKKLGESKEKSNCLMHISATTQRKNIWCVDSGATSHMCCDKGLFTSFINKETSIMLAADKFVKSSGIGTVMLKS
QNVNIELRDVIYVPSLHMNFLSVSKSAEYENITTFDKKAAVIKNKQGEVMMRAMQEDNLYLFTSSSKNGAVHLLNDSSRM
ATWHNRFGHLNFQCLKEIKEKELVIGMDFKNMSVNINCDTCNMAKIHVLPFPQNSERATQSVLELVHSDVCGPMNVSSLG
GNKYFVTFIDDYSRKIFIYFMHAKNEVFDKFKLFKSYVECQTGKKIKALRSDNGTEYVNRQFTEYLNTCGIKRQLTVPYT
PQQNGVAERANRTIVEMAKSMLIHAKLEEFLWAEAVSTASYLRNRCPSKALMGATPFEIWQNRKPSVKHLRVFGSRAFAL
DKTRKSKFQAKGKEYIFVGYSSTAKAYRLYDREKRIIVARRDVKFVEGEFESKKCTISEQNNDFATNIIHLESNIQVPEQ
QRPAMPMVVEQSSNSYDSCDSGEEEEEFVSASDEKQILTEEEIVPDVQEQESNAPRRGPGRPKIIRSGKSGRPRKQYNSL
NYIEDIETPQCVGDALRGEHAQDWKTSMQKEYDALVSNNTWTLCDLPPGQKAIGSKWVFRVKRDKEGNIQKFKSRLVAQG
CGQKMGVNYSETFSPVIRYETIRMLFAIAAEKQLCMHQVDISNAYLNGRLQEEVYMRQPQNFIDEKHPNKVLKLQKAIYG
LKQSGRVWNDTLDEVLKSIGFKRSKNEACLYAKQQQQQHSYIAVYVDDLIIISYDENEISAIKRKIANKFDIHDGGQLNY
FLGMEIQRESTRGSISLCQKQFIINLLDKYGMQNCRPAATPLDPGYKMGCRNENCVKVNITQFQSLIGSLMYLAVLSRPD
ILHTVSKLSQRNTDPHSEDETAAKHVLRYLSATVDLKITYSKSGEQVMGFADADWANDLSDRKSYSGYAFFLGGSAFSWT
SAKQSVVAMSSTEAEYVALSTAAKEAVYLRRLLLEIGWSLDGPITICGDNISSHHIAKNPVHHKRTKHIDIKYHFVREKV
ECNEIILEYVPTDKNVADVLTKGLCKQKQQNFTKLLGLN
>Copia8-NVi#LTR/Copia 670-5899 via tfasty with SHACOP_MT, 3 frameshifts and 2 stopcodons.  [Nasonia vitripennis]
MLINSTGVDQEEFRRIILREWARLEANEAYGDKYHRDTVTLLRKKDGSSYFLRSELQLRRFDEVLSETERAVIDRVWPAV
KKQLVFQLRYSVDSITRSEFMWMMLEQNKMFLTGIEMLVKGLTMPGFGQQLPYFDQSPPAKPLSVEPRGPEPPKSTVTVQ
PKKPAALVEETEPVEPRNAFLDIRKKPRIKGIENFPKAASTPFGRPQTVRCTELIDMSINMREPVKRSAERRREPSEGGE
LSNNSEDEAQETRESNKSDTPVEISMFDPYRASGSQQMQPPPDQEHRSKFPRVSVRQNNCCQFVEQSNNVPLNVVNELVE
NKIKVLLLERDKEIEKSSNDRSFLNLSEQLKNEFIGRENLGSRTYKLTVKTNFEMFEDYLKSELRNKKLHYILDESVSMN
STVNESKRLDDEFKVREIIINRIDAIYYNKIVNLTDPKLILRKLKDVKRYETRTTRITARRDLMTIKYLPSKETASDFYD
IFQEKVRIFENIPDAGKLPENELKDYFLQAVAEAVPEITTADQLFKEATSTEMTCERLKNYLLQVGSTKSRKMPSQPPVR
AFVHSSQGTGRLICRGCGMEGHTKTNCPNEGLRQCYYCLKLGTHLAHECNKRKADAEKGQATATSYGPPSKRGRWTGQGS
RSTASRGRTSKMAASGRASVAPANRGARGARGASTRGRGRGRGGPQRGVGYSRLQQGTSLQAIAEEYQGNKANCGNKELL
EFIADSDATEHLSRSKLYFDKFDSRAITKVDCANKDSTFRTDDSGSTEVVTEDNNTFTLNNILYSKNLSYNLLSLRRFVD
RGLEIYLNNKIIDIYNPELDKSILTREYKKPFWIIKLVLSKDTATKTNPKIMYNTRSKKNSVKINDSDVNKSVSGRSSVD
KTRDLMMWKQIFYKHLVTENTHKTETSQVDKIDVNKNHNKPREEISEAMLWHIRLGHVSKKYLLVLAKQNDKLINIENIN
KDKTIQDEKFYYLRCDRGTEFVCQATREVLGKYGAELQLACPDTPQYNGVAERFNRTLENKVKVMMLDSGLPHSYWDLAI
KTAVYIYNRTSHKSVDMVAPLSKILSNQSECVSQVKVLCAAYFKIARSTETKFSPQAKQGFLIGYLSTGNMILVPSENKL
YDCKHVRFVENLTYKDFQSKSIENDQSELKFEKESDSETEKERQSVEIKSKRGRPKKNPVAMFFLTEDPEIQEFDFDREF
SDLKYHALLAKILGDPxTFKQAVNSPEREHWLGAIKSDLDSIKEKQVYTVVERSKVSMINLGPNIIDSRWVFKRKTNEQG
ETKFKGRLVIRGFKDKNVYDLRETYAPVSRMSLIRAFFSIANKLNYTIRQLDVETAFLYGDLSEDIYMEVLEGVQITSDT
RKRFLWKLNKSLYGLKISPKKWNDKFSSVMTKLGFTSNDIDPYLYIKHSGVDTILVVLYVDDILLASSNNEVLNKLSQNL
IAEFKIKDLGTPKEFLGIKIERDQTKRVIKLSLYETIFMLSRFGFESCRPLSTPMRQLEVVSHDRKEREETENTLAESGK
EQIPNKLYREAVGSLLYLANATRPDISYAVNVLSRHQVNPTIQExNMVKRVFQYLSGTRNYELTFNRTDEGLITYSDASL
ADCKSSLTTCGYVIRLFGNTVAWRTHKQQSVALSTCQSEYVAMSETCQECMSLHNSVAIMLERNLYPLTLCCDNMAAISC
AKVNGGNRLRHMVERREHYVKECVNKNYIKIEWIKSKSQLADIFTKALPKQLHYELLKIIFNI
>Copia7-PTR#LTR/Copia 52-4131 via tfasty with ATCopia13_26-4591, 2 frameshifts. [Populus trichocarpa]
MSGDEDQRFLEQNRSSMSFRTSETWENSNHPLFLHHADQPGAVLVSQMLMEDNYTTWVQSMSMTLTIKNKKGFVDGTLRR
PTHNSNEQQQWDRCDILVRTWLLGSISKDISGSVIHCKDARGIWLELKERFSQTNTVSLFHIENVIHDCEQGTNSVTTFF
TKLKCLWDEKDALNSFPPCNCEVATTVKTFLETQKTMKFLMGLNESYAQTRSNIISMDPLPNLNKAYAMVLRHEKQAETF
TGKLNTPPEASAFTIKKVTRDFASTNGEIKFCEKCNMNNHNTKNCRAHLKCTYCNGKGHTYDYCRRRRNATAGGQGRSKA
NHVAPQNHDKEDLPEFPFSREECHQLLSQLLANTKSASANLVGTFQIMRNSQDLRSGKMIGTGTEKEGLYCLNLSSTATC
NAVYINTDNLWHQRLGHPSTKISSLFSFIANKACISRNCYICPLAKLTRQPFPLSTIRSASCFDLIHIDIWGGYHVPSST
GAKYFFTIVDDHSRSTWVYLMKHKSEARTLLIHFIQMVANQFSKSIKVIRSDNGSEFKIPEFYSSKGIIHQTSCVNTPQQ
NGVAERKHRHLLNVARALLFQATLPKHFWGDAILTAAYLINRTPTPLLKGKTPFECLFHTKPSYSHLKVFGCQCFVSTHP
THPSKFDPRAHECVFIGYPHGQKGYKLYLLTTKNIRVSRYVIFFEHVFPFQPSPVLTSRSHSPKLIPTISHTPSMHISIL
ILYPPTSQSSAVPYSHHPILSPDLISSPPTDNNPSIPSAYNNTPDPPLPLIPSPLPTQPLPPNPRRSSRATKLPTALQGF
HIDAALPSRPDRSDSSTEVLSPGQAHSLSNVLSYANLSSPYRTFTANMTIPREPLSFSQALQDPKWRDVMQQEVQALHAN
KTWSFVPPPAHKRPIGCKWVFKIKYNPNGTIDRYKVRLVAKGFSQVEGIDYRETFAPVVKLTTVRILLSLAAMQNWHLHQ
LDVNNAFLNGDLDEDVYMQLPPGFRRKGEHRVCKLHKSLYGLKQASRQWFLKLSSALKSVGFTQSWSDYSLFVRNHQGIF
TALLIYVDDVILAGNNLDDITKTKRYLKDMGQLNYFLGIEVARSKHGISLCQRKYTLEILEDTGFLGAKPSCFSAEQNIT
LTQEDGDLLEDASQYRRLVGHLIYLTITRPDLAYAVHILSQFMDKPRQPHLEAAHKVLRYIKHAPGQGILLPSKGPLELR
AYCDADWARCKDTRRSTTGYCIFLGHAPISWKTKKQSTVSRSSAEAEYRSMATTCCEIMWLLYILKDLNVKHEQLVKLFC
DNKAAIHIASNPVFHEKTKHIEIDCHVVRDKVQKELVKPEHIGTKEQPADIFTKPLSSNQFATLLGKLGVINIHSNLRGS
>Copia9-PTR#LTR/Copia 71-4106 via tfasty with ATCopia23_39-4058, 1 frameshift and 1 stopcodon. Copia-43_Mad about 80% identical  with internal deletion. [Populus trichocarpa]
MASENSFVQPAIPRFDGHYDHWSMLMENFLRSKEYWNLIETGITAAAEGSSLSELQxKTYEDQKLKDLKAKNYLFQAIDR
SILETILKKDTAKEIWDSLKQKYQGTARVKRAQLQALRKEFEVLHMKNAESVNDYFGRTLTIANKMRIHGEQMNDVVIIE
KILRSMTSKYDYVVCSIEESNDLDTMSIDELQSSLLVHEQRISRHVNDEQALQITHGFQQGGRCGGRGTYQGRGRGRGRF
GFNKSILECYYCHELGHFQWECPKRDKEQRVNYAETKDEMLLMAFVDSNETAMEHIWFLDSGCSNHMCGKQNMFFDLDKS
FRETVKLGNDSSLTVQGKGNIRMEVNGCVHIITEVFYVPDLKNNLLSIGQLQEKGLTVLIQHGICKIFHKEKGLIMETEM
THNRMFTVHARYTPKESKCFSSLITDQADLWHCRYGHLSWNGLKVLQQKKMVKGLPLFTASKKVCEDCLVGRQHRDPFPR
ASMWRANNILQLVHADICGPINPVSNGKKRYLITFIDDYSRKTWVYFLMEKSEAYSTFKSFKARVEKETGTYIRRLRTDR
GGEFTSQDFTDFCNEHGIQRQLTTAYTPQQNGVAKRKNRTIMNRVRSMLTAKQIPKTFWPEAVNWTVHILNRCPTLVVKN
KTPAEMWNGHKPSVDYFRVFCCISHVHVPDSKRVKLDARSVKCILLGVSDESKAYKLFDPISNKIIISRDVVFEEDQQWT
WDDDHKQAIFTELEWENDTEGAVENEGGEPESDDSEESIFNEETGDSEPDGGNIEADGDNINISHEDINISHEEHETRTR
RPPGWIRDYETGQGLSDEETVNLTHLALFTDGDPITFAEAVKFEKWRKAMDQEIQVIEKNDTWDLTVLPSGGKTIGVKWV
FKTKFNEHGEVDKYKARLVAKGYCQQHGIDYAEVFAQVARLDTIRIVISIAAQKSWVIYQLDVKSAFLHGEITEEVFVEQ
PPGYEQKGHEAKVYRLKKALYGLKQAPRAWYSRIETYFSKEGFIKCPYEHTLFIKTVGGGKILILCLYVDDLIFTGNDNA
MFEEFKKSMKTEFDMTDLGRMKYFLGIEVLQKADGIFITQRKYAQEILERFNMAQCNSVHNPVVPGFKLTKDEEGVAADS
TVYKQIVGILMYLTATRPDLMFSVSLISRYMERPTDSHFQAAKRILRYIKGTIVFGIFYKKGGKAELVGYSDSDYAGDQN
DRKSTSGYAFLMTSGAVSWSSKKQPVVTLSTTEAEFVAAASSACQVVWLKRILTILNQEQSNPTVVFCDNISAIKLSKNP
VMHGRSKHIDVRFHFLRDLVKDGILELIHCSTQQQVADILTKPLKLDTFLKMRNLLGVHEYPGIN
>Copia26-PTR#LTR/Copia 494-4012 [Populus trichocarpa]
MQKMKDSETIRDFSDRLLSIVNKIRLLGEELSDQRVVEKILVTLPERFESKISSLEEAKDLSKISLGELLNALQAQEQRR
TIRQEESMEGAFPAKVQVKESDKGKRKNIKYKGAGSSNRRVGTFPPCQHCKKTNHSQNYCWWRPDVKCRKCNQLGHMEKI
CKNRTNQQHEEAQVADQQQEEQLFVATCFVSKHASDCWLIDSGCTNHMTNDVNLFKHLDKSSVSKVRIGNGEYILVKGKG
TVAIEGNSGIKLISDVLFVPEIDQNLLSVGQLLEKGYSVVFKNKHCLISDPTGLEIFTIKMQGKSFSLDWMEEEIAAVSN
TTNEADLWHKRMGHFNQATLVHMQRRKMVRGVPSLEEKITVCVSCQYGKQHRLGFPQNKAWRASEKLQLIHTDVAGPQMT
DSLNGSRYYVAFIDDYTRMCWVYFLKSKAEVAGVFLRFKNWVENQSGHKIQIVRSDNGTEYTSNKFAQFCHDAGIEHQYT
TPYTPQQNGVSERKNRTIMEMARCLLFEKDLPKKFWAEAVNTAVFLLNRLPTRALQHKTPYEVWHGYKPSLQNLKVFGCL
CFTHIPQVKRDKLDRKAEAGIFVGYSNVTKGYRVYQPATEKIIISRDIKFVEAEKWNFEDTTSNASKEIMQDFDEDVDDT
PVRGTRLLADIYQSFNVAVLEPAEYEEAKNDPRWVTAMKEELSMIEKNQTWELVDMPTHKQPIGVKWVYRTKLNADGTIN
KHKARIVVKGYAQVFGVDFSETYAPVARLDTIRMLLAIAAHKGWKIFQLDVKSAFLNGYLQEEIYVEQPKGFMVEGEEDK
VYLLKKALYGLKQAPRAWYNRIDEHLLKHGFNKSLSESTLYIKSSNTGLMAVSLYVDDLFVTGNNSTMIDIFKAEMMEVF
EMTDLGEMSYFLGMEVQQNQLGIFVGQQKYAKEILKKFKMEDCKSMTTPMNLKEKFSKEDGADKVDEAIYRSLIGCLMYL
TATRPDIMHAVSLLSRFMHCASEIHFKAAKRVVRYIKGTLNYGIKFSCAENFELQGYADSDWAGSCDDMKSTSGYCFSFG
SGIFSWCSKKQEVIAQSTAEAEYVAATAAANQVLWLRKILADLDMEQREATKVNVDNQAAIAISNNPIFHGKTKHFKLKY
YFLREVQKNEELQLIYCKTEDQLADILTKPLPKARFETLRNKIGVCSKRCKEE
>Copia18A-VV#LTR/Copia 180-3596 via tfasty with TST1, 3 stopcodons. [Vitis vinifera]
MLENSGTPSFSFCINALHRVYDDSWIIDSGATDHMTSKSQLFNTYTPSPSNKKIVVANGSLVTVAGFEDIYITPTLILKN
VLHVPKLSANLVSIQKLTHDLKCYAIFFPSYCVLQEQGSGRRIGLAKEMSGLYHLESSxKTSNNLSLSLLSSSNKDTIWL
YHLCQGHPSFRVLKVMFPHLFQGLDISEFHCETCELAKHTRVSFPISNKRSSHPFHLIHSDIWGPSTIPNVSGARWFVSL
IDDCTQVTWIFLLKQKSDVSIVIPNFHSMVQNQFGVKIKSFRTDNARDYFNxILSPYFQSQGILHDSLCVNTPQQNGVAE
RKNGHLLNTTRALLFQGNVPKSYWGEVVLIATYMINRIPSRVLDNKSPVEILKSFYPHFRTSNGLTPRVFGCTAFVHVHS
QHRDKLDPRAIKCVFLGYSSTQKGYKCYNPLARKFYIFADVTFTENKPFFHKSSLQGEISMMEDSPYVSFEPLDLPHVST
HGDEEPVSSSVPASVTHNFPQFPKVYSREKAIPEQKQVQESNSDLGNEITVRSDPPLHTQPGETSTNSTDNLDLDLPIVR
SDPPLHTQPGETSIDSTDNLDLDFPIAVRKGTRECTNRPLYPLSHYVSLKHLSPAHKNFIVSLNTTIIPNTVSEALTKRE
WKDAMREEMSALEKNKTWEIVERPKGKNIVDCKWIFTLKYKANGSLERHKARLVAKGYTQTYGVDYQETFAPVAKMNTVR
ILLSLAAHYNWQLLQYDVKNAFLHGDLDEEIYMNIPPGFEENTGNKVCKLKKALYGLKQSPRAWFGRFAKVMKESRYKQS
QGDHTLFIKHSATGGVTALLGYVDDIIVTGNDEREKHEVKxRLATEFEIKELGKLKYFLSIEVTNSTQGIFISQQKYVTD
LLVETGKIGCKPVSTPMDPNHKLGEAKEEPMVDKRMYQRLVGRLIYLAHTRPDIAYSVSVISQFMHDPREPHLQAVYRVL
HYLKGNPRKGIMFKKNNTLALEAYTDANYAGSLVDRRSTTGYCTFLGGNLVTWRSKKQNVVARSSIESKFRAIAQGLCEL
LWLKIILDDLRIKWDGPMKLYCDNKSAINIAHNPIQHDRTKHIEIDRHFIKEKLEKGVVCMSYVPSEHQLADILTKGLNS
SMFKDLVFKLGMEDIYSSA
>Copia6-NVi#LTR/Copia 144-3560 via tfasty with Copia3_XT, 2 frameshifts. Coding region for C-terminal ~150 AA absent in consensus. [Nasonia vitripennis]
MIQNIEKLSGADNYHDWAVLMKAYLEHEDVFDTIVAPTGEQISTDATKRRLARTKIILAVERVVLSQIQNLESPKDIWDT
LKNAYAIESLYRKTSLIIEYTRIRLEDCNSTEEYIDKIITIHQKLKNIGKDLGDDFAACIMLEGLPSEYEPMRMALESLP
EKEITTENVKTKLLMQVKWRQGANKSNEVGLYAYNQNKQGGGYSRGPNYRRNFGARPMNSAGIRCYRCNKYGHMSTDCSL
PDKRNHPNRYQANHVTEENEDENNEDDDQIAAFAFVGLAAGNGASTDDWIVNSGASRHICNNSSIFAEIHKSDLTYITVA
NRSKVQVRGEGGVYLRLENGITVKLLNVLQVPDITVNLISVGQTNLKGYSTVFSSSGCKIMNQRGDLVLYAKLQNGIYKV
PRFSNPQDIDKQENNRRDRSVALVASAQPQDMELWHRRLAHLNYNSLNQLRDGAALGIHMKPGKAEQCEICALEKICKQP
FKLNEKRANAALEIVHTDLCHVTPKSNGNATYILTFLDDYSRKAFVYFLKKKDEVYKSFVHFNNFVENETGNKIKSLQSD
NGTECVNSKMNQLMDQSGIKRRLSIPGTPQQNGRAERLNRTLLDKARCMILDAGVAKSFWAEAVAVAAYVHNRTPKRCTK
YKTPQELWTGKIPDLSHIKVFGCKAIVHVPESKRGKMDAKGTRCIFIGYCPTRKAYRLWDPSAKGVVISRDVTFYEHGSL
KPVVPDNINGTKPVFLIADDPDDNSEEEAYSVDQLKQVDTSMEESTENENPCHQPTGHEGLPAIPDQPHALDQDAPPDGQ
PGVKSQTEGIRRSSRVRRMPTKYTEYYLSRKRNSEAAHLADASDIPDKKSRQDNQTRYKARFVARGCKQLNGVDVTETYS
PVVRYTTLILLFSYAVRKGLEIEHLDVETAFLQGELEEQVYIQQPEGYVDPHHPDLVCRLKKAIYGLKQSGRVWNVKLGS
ILNEMGLQRCEYDPCLYHLQRSGAELKMAVFVDDLLVFASSRALIQEVTAELRKRITLRDLGDITRCFNVNVTRDRVERG
ILSMDQRDSIVRILRDYGMEGCNPCSIPMDAGSSLVADASPKSKSELDELSKIPYQNVIGSLMYLLQMTRPDLAYTVSTM
SRFNTCYGMEHWKVLKKTI
>Copia3_LC_env#LTR/Copia 5347-7017 (low quality)  [Lotus corniculatus]
MFLLEDVTDEEEINDEDSPVKSPPDVVPDVETSXSXESSXQENPGKDSTSHEDSGNATQPDXSVSSSSKDADPKNGNSEX
TNSEEPXQAPXXVQXISDDASDDVPLTXSFXDSVAARMKXKRRVSXPEVTPTPXKXSKSSPXTYKSRQASVKBKGKQKXD
KTPXEKKKRKXPVDVEDSESDVEXXVQDIRXSEKKKXSGKRIPQNVPXVPIDRVSFHLEEXVQKWKFVCKRRMAKEREVG
XDVLECXDVIALIEKAGLMKTIQNVGRCYERLVREFLVNLSVDVGRPDSXEFRKVYVRAECVVFSPAVINQALGRSAIXF
XDEEVSMDVVAKELSAGYVKKWPSKKLLSTGNLSVKYAILNRIXAVNWVPTQHTSGVSATLAKLIYRIGKSIXFDFGTFV
FEQTLKHADTCAVKLPVSFPSLLTEIILKQHPQILRADDVAMSCGVPITLDQRLFMXPHVLDIALPTSXTSAXPVTESGT
QAIIAELQEVSKALQXTIRVXTARKLKVDALLLKLQEEERQEGDKVKRRKDLXXVQRKVQKBXXXSPVLKTSLFCF
>Copia1_XT#LTR/Copia  189-4049 [Xenopus (silurana) tropicalis]
MAANSTKFSVANLTNQNYQSWKFKIKMLLIREGTWKCIQEARPNPPTDEWLEKDQKAQSTISLSIDDDQIVHICKCETAK
QMWEELQKVHERANLSNKLYLIRKLYQTKLMKGQHMQDYIRSTLEMVERLRGVGEEIKDFHVAALLLSGLPESYETLVTA
LDARPDDELTLEYVKGKLVDEYKRKAESTNDKSATETETALKIKDQTKNPNALRETRECYVCKKPGHLKANCRVWKARMN
QLKRQANQQKAKSVKGEMEDTNAECAFHSKEDGASIHNWCIDSGATSHMTNDKKFFTQLDQSKAERIATANGQYMVSEGV
GEGFLHCPVSKTVTRKIPVKNVLYVPALESNLLSVKKLTKQGNTVTFKGNDCIITKGSCILAKGKIRDELYQLDCKEMVK
AAKEERHVNCIHTWHRRLGHRNPEAIKRLVQDQHASGIKIDACSKQMKCSSCIKGKMTKKPFPKASNSRAQQPLDLIHTD
LCGPMKTQTPGKKRYFLTFIDDFSRYTVVYLLHSKDEVPEKLEEYLAQVSNKFSKMPKILRADNGTEYTSGKTQAILRKH
GIMFQTTVPYNPEQNGVAERMNRTLCESGRSMLFDADMATMYWGEAIVTACYLQNRLPGKAIEKTPFELWNEKKPDLRHI
KIFGSKAYVHVPKEKRTKWEACAEEGILVGYSESQKGYRILHPNTNKVTISRSVIIDENSVCLKFHDVITTAQSTEDPQP
ILQSTETEVSVSDTETKQAEDETSTSSVRKSSRSNKGIPAKRLSYMVRTAPQPEPASWEEMQKLPIPEKQMWIKAANEEM
ASLNQLQTWKLTELPQGKRAIGCKWVFKAKCDSEGNIHRYKARLVAKGFSQKYGEDYDATFAPVAKQSTFRTLMAIAVLR
NMIVRHHDIKTAFLNGDIVEELYMTQPEGYVKDGEEHLVCKLSKSLYGLKQSARAWNAKMNKVLLDEGFTRSKADPCLYC
KHTGEEWMYLLLYVDDLIIVHKEYTEIAKLNSTLNKHFETKDLGDVTYYLGIQIQREEDGSFLLNQSAKIGVILNQFGMA
ECKGVSTPMDTAYLKLEGEEDLLPNNEKYRQAVGALLYIATTTRPDIGAAMSFLCRRVSKPRQRDWNAIKRVMQYLKQTK
DLSLKISASGVLELTGYVDSDWAGDPSTRKSTSGYLFKLGNSPISWSSKKQISVALSSTEAEYISAAHASQEVIWLRQLL
EDIGEPISQPTVLYEDNQGCIKLANSEKINARTKHIDVKHHYLRDLLEQNVIELVYCETDNMIADAMTKPLPRSKFEKLR
TRMGLM
>Copia3_OS#LTR/Copia 438-4436 [Oryza sativa]
MASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKRDRKAMSYIHLHLSNNILQEVLKEETA
AGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDXSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRD
TILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTNNXSRDKSSSSYRGRSKSRGRYKSCKYCK
RDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATY
EAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK
ADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVK
FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT
DNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAI
DKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHD
KPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKDKPKRNIKPPRRYIEEANIV
AYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARY
KARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVC
RLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEM
KDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAV
GSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSRDGLVGYVDSDFAGDLDRRRSLTG
YVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKH
IDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPATKFELCSSLVGVTV
>Copia4_MT#LTR/Copia 70-4953 70-4950 (1 stopcodon) [Medicago truncatula]
MSKVKYIAEGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPTNKEGAVKAKSAWSTDEKAQVLLNSKA
RLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLG
KAYSTHDRIRKILRCLPSMWRPMVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDV
QEPQELEEVHEEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTGHFKNECPDIKKVQRKP
PFKKKAMITWDDMEESDSQEDADTDMGLMAQSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKE
EKEILQNKYDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGFIKSTETFQNIVG
SQNKSTKKSGLGFKDPSKIIGSFVPKAKIRVKCCFCDKYGHNESVCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAK
KTCFYCNKSDHKRQNVTFRKDLLEELTFKDPTLHGYLKFLSCQMxVLPQGARTKPWYLDSGCSRHMTGDRDCFLTFEKKD
GGLVTFGNNDKGKIRGKGTIGNLNSARIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFSGSRRKN
LYVLELNDMPAESCFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDRICEACVKGKQVKSSFKTIEFIS
TQKPLELLHIDLFGPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFE
NASFKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNESNVENYFWAEAINTSCYILNRVSIRKVLNKTPYE
LWKNIKPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDEHSKPKEN
EDTEVPTLQNVPVQNTENTVEKEDDQNAQDQSFQSPPRSWRMVGDHPTDQIIGSTTDGVRTRLSFQDNNMAMISQMEPKS
INEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFA
PVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLST
FLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIF
ISQEKYVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKES
HLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYV
SAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLAD
IFTKPLVEDRFNFLKEKLLIMKNPNKD
>Copia4-PTR#LTR/Copia 1103-5113 (1 stopcodon) [Populus trichocarpa]
LKGDNYKIWKERVLLHLGWMDIDYAIRKDEPPALTNTSTAADITLHERWERSNRLSMMFIKTRISAGIHGSVDQHEKVQD
LLKAIDEQFITSDKALASTLIMKFSSLRLTSVRGVREHIMQMRDLVAQLKKLEVEMSESFLVHYILNTLPHQYGPFKISY
NTHKENWSINELMTMCVQEEGRLVMEQGESAMLAIRGKGKSQAYQKGKGKIPPQASIKKDSKCFFCKKKGHMKKECAKFQ
KWLEDKGNPTSFVCYESNMVNVNINTWWIDSGSTIHISNSMQGLQNLRKPVGSEQSILSGNKMGSHVEAIGTCYLILSTG
FILKLEKTFYVPSFSRNLISVLRLLPFEYSFNFSESSFSLFYKSDCVGNGILSDGLFCINLQNHITYDSMHVHTGIKKCV
IDENSSKLWHQRLGHISINRIKRLVNEGVLNTLDFTDFETCVDCIKGKQTNKSKKGATRSSDILEIIHTDICSPDLDSHS
HKYFISFIDDYSRYMYLCMLYNKNEALDAFKNFKAEVEKQCGKQIKIVRSDRGGEYYGRYTEDGQALGPFAKFLQEHGIV
AQYTMPGSPDQNGVAERRNRTLLDMVRSMLSSSKLPKSLWVEALKTTVYILNRVPTKDVPKTPFELLKGWKPSLRHMRVW
GCPSEVRIYNPQEKKLDPRTISGYFIGYAERSKGYRFYCPYHITRIVESRNAKFLENDLISEIDQTRNIVSENDHSESQP
SSSSDKLNIVYNTPQVQTDVEQPIIEVPQIADDILIDQVVQELPRTFEQRVEPHTSQEYDGTTLRRSIRPKRSEIPNDYV
VYLQEYDYNVGAENDPESFSQVMSCKETELWYNAMKEEMNSMKSNQVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYK
ARLIAKGFTQKEGVDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTTFLNGDLEEEVYMKQPEGFLSSDGEQLVCK
LKKSIYGLKQASRQWYLKFHNVISSFGFVENVMDQCIYQKVSGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKTFDMK
DMGEAFYVIGIKIHKDRFxGILGLSQETYINKVLERFRMKDCSPSVAPIMKGDRFSLNQCPKNDLEKEQMKNIQYASAVG
SLMYAQVCTRPDIAFVVGMLGRYQSNPGLDHWRAAKKVMRYLQGTKDYMLMYRRTNNLEVIGYSDSDFAGCIDSRKSTSG
YIFLMAGGAVSWRSAKQTLTATSTMEAEFVSCFEATSHGIWLKSFISGLRIMDSIHRPLRMFCDNLAAVFMAKNNKSGSR
SKHIDIKYLAIRERIKEKKVVIEHISTELMIADPLTKGMPPLKFKDHIVDMGLCSIM
>HaTad1-4_BG_gag#LINE/Tad1? 128-1543 [Blumeria graminis]
MAGVGAGVGKSSGFDASQNATTASSNNGSGAQTAPKDKNLEILGKLLKQVRLIVMGEMDEEDLPSMEDVNEAVKAFNAHK
RAWTEMSQKKSPIEERMMALEEVVKKSLADPARVSAPAVTSGAPPPRSYASVVAPQMTKTAVRIRIDGAEKLQPEELLSK
AKEHIQGAYAIRQMRSNDTEVYVQSASQRDAALNMREPTDFKILRQDFPVVVNGVPLRTRIEGGRDADNFAIIREIETAM
KARIPGLVISRIRWLYDGKEHQRSKKNGRNRGSIVVSLPSEAMQTEVVRNGLVMNAMLFTAQVWSPRSQPKQCYNCSQWG
HTQASCGKAARCGECAGAHQTRDCPRKRVSCANCGKEHRSWQKAACRTYQVYKGSVEKARMELLSRTAEIWNEKPIMAPT
RTVAPTDDQGFTLVTSKKAEGLKRGPGRPRKVVEAPVAPIIASTAAPPSGPTLRALRRPTPSEEVPSLFNFS
>Tad1-21_BG_pol#LINE/Tad1 2029-5697  [Blumeria graminis]
MSINVGRGGPTQDIALARAFELGVDVLLVQEPLWRKQSKSTKTHPGYDCHIPRGEDQSRPRAVTYTRKSGNEIIAKQIFP
CATPTADYCWVVVNGITFLNVYKAPNDPQAVQPLINWDPPPNSVAAGDFNSVYWAWQPSTTRIHGQGEEIDRWAQHHHLS
CLIIGEPTHKAGNTLDLAWTNINGAQAWVDRSECVTSDHLPIRGQIPIRAARMKAGIPKLRVTKKNLPKFAAFTARWIKP
PSALDTVEKVEEYAHELCFQINAAINATGTRARASSGKSAPWWTPACRAARDKYRATLPSLQRSVCAKKLRSVLRAAKKE
YQTQQVEAMKSPSDVFKLLRKASPRQASIPPPLNHNGTLISDPLERATILRDELLARHQASDDLPPCTATSSNRIPWNED
ISEEEVRHCTIGCGNTAPGADGISVELLAACWNTIGPYVAQLFRACVRIGIHPSCFKLAEVVLVPKPNRDPTTVKGWRPI
ALLSCLGKGLERLLAKRMAHLAVIFDVTGQQQFGALPKRSAIDLVSCVVHDIEEASSQKWTATFVTLDVQGAFDAVLHNR
LVIRMQEQGWPDSILKWTTSFLAHRMVQVRHSGGVTAQRQLSCGVPQGSPISPLLFLLYMAEPMRSGKPGMRFSYADDFG
IIGFGRTITESAAAAQSEVDDLLDWAGKNAVAFDTSKSEVIQFPARCREPAKGIYVNGTLIEPAEHIRWLGVYLDPRLTF
KHHVTTWCGKALKVAQNLRRFNTALRGAAPGALIRAVDMCVVPIATFGAEIWWPGLKRPTRKSMTTPPTAHLCGMIDKAV
LMGLRAALPVMRTTANVVLHREGGIPPGKIILEGNRLRLSVRLKTLDDRHPLRIRAAVCPNIGTRKYKKRNRATSVPEVI
MSRVQRAYRQLPEAEGAEPLPPTSYLPKAGSKEEQIEICRQWINQVSKSEICAYSDGSSEGNGRSAWGFVLKRDGQTLLT
GSGIRHGGEALDAEITGARKALEAALGLQSATQRVYLFLDSQQAINALETGKSTTSHDEVRKFRELSKTARVAIKWVPGH
SRIQGNLEADSAARSGLRMLPSPEIHPESITLAFLHGQMNRLRQALLDDWWNEACPPRYRKLDLLMRRRKPPELGLSRFL
LRNLIAARTGHGNFAANHRRFNNLDALMECTCGEETTPTHFIHCRLHAHVTRRLRGRLTHSGFIQKLLGPKCHEFFKIFE
KETCCFGLPSTNSSPDLIGDNIN
>I-3_AO_pol#LINE/Tad1? 235-3766 via tfasty with I-1_AO, 6 frameshifts and 10 stopcodons.   [Aspergillus oryzae]
MCPTRLQAAAEADYTRKHKPKYFPEPARPVTSLPIGPPPLTSNPSGDSEQPEEPEPEPAESSAETRKKAKKVVETSLTTT
PTPLPEGAQRNLRRRAITYAHEVCLVNSATSDHSESTEPESDQREPSGTISQADSSEQSEESNPSGRSDTDAPSAPKNSE
LDRDANLEIPDREEVQQCSALDTDTRPEQQTPISPFSSPKKRRSTRLQEEPIKRRKTTGPREIPQPTPEQWRNPSRLDPQ
AESRTCRSYVGIGTDRQLKTTDQRKTHQTKCPQGARGGDGADRRVPSSAPAPARLRSTRNATRLTGAYAPPLQGPSGLEF
TAQAKAKLLSQMFFPPPPPVNLDDIRNYKYPEPLQNPGITQSEMLQSINRPREDKDPCPDDITDRFLQVTADLVALILTE
IYNESLRQVHCPTHFRKARTVALRKPGRDGYSKPKSYRPIALLNTIAKVLEGIMALRLSYFAEEYKLLPDNHFRGRKGQG
TETALQVMEIISRAWKRGLTASALLLDNLGAFDNVSHQQLLHNLRKRRIPSVIVNWMASFLTERYTTLELPEVSCPESMI
DTGIPRRSPVSPILYLFYHADMHxRRxRNENIGYIDDATMVAVGPAPAENCxTLRKAFHQYLRTVVTDTRLGVVLDRQFD
FQTHLQQIDTKCSQGLRAITLLGRSKWGPSLEDKRQVYNACVTPVALYGASVWQHPGAPKKKGMHDRQLRSLVAIQRRAG
HSISGGFKVVSRDAFDAELHLLPITQRLRRNRLTALTRIAATPAYQRILRQRAFSQNQALHSALEVAKESSTYGLTSTPC
GWRSQPHLCAPWWKLPHVEIAKWKTEALTRHGIHCIAYPVVPKVYTDGSGHHGETGAATFCLDPRTYxQPYLGPGRHATV
PVAELAGLVLALRMATEDPxSQGPVEVYIDNESSLNMLxNPKxGSGQHLIKQIACLLGERRQQGWPTTFxWIPAHVGVPG
NELADEMAEWATGWRPALGTSDGPRAKGIPGLDLAPQQSTADRWIRTKFRRMGRxLARQGPKAPGKEPHDLKPTIRSKDR
IIYSGMTPSERSVLFQTRSNKIGPNGxLARAARIKRADTDRYPRCRSAPETRHHLLITCPAYRKLMIKKWFDSQSRPQNL
KEALNNLKYTLRTARFLLQTALLRLYGEYDDDDDNDSGDDDVVDSSDSDTSGSGLT
>ERV1-N6_DR_gag#LTR 873-2522 [Danio rerio]
MEDMMVKYIAKHGTVGIFDGIEKVVDKPYEWAISKFENFSKMPKNNKGKIANALQAVLASYKVTRKRVVELEAENERLSV
EINASKYYQASEALWKEEKIRMQBEITRLKTHKDLLASSVETFYINLXEARATCNFFIXNGLTENNTSETLNANRVPKMT
DIQEDDEEWXRDSQSVSSQCSECTVRFPMAPVHSNTTMHITEAGVESTTHNTVRGFNPNELEAVIANIGKFDPTEQDPLD
FLKRLEEYAEVYKYTDGDACVLLRMCLPETLSGALGQKVKDKTANKSERKQALLEVLGVMSVNWDKISETHMKRGEHPRV
FSERLLEMFKTFSGNPDITYDDVSFKSALINKCDPHTHSAVTMLVTPLSDYNEIIGKMTQFYNNNANSQRQMKDARYPVA
AFASREYSSSSNGFHHRARKFTSVNSMGVVLCYACGKAGHIARXCQKSAKSQSIXCHACGKNGHIARHCLEKMRKDQEVV
CFRCGIMGHKAIQCHVSVKRKTSYKDLHKKIARLENQLEELKGMKEGPIHTFSDTSLHENDCNSVSSSC
>Ylli_gag#LINE/Zorro 365-2548 RepBase name: L1-1_YL gi|46250580|emb|CAC85649.2| gag-like protein [Yarrowia lipolytica]
MNIYNRARPEKTFTMETAQAQASAGNSLGAPNPPPPDLSRGDGATSTETPNQTDIEKIQKNDKNDENNKKNDKNDKNDKK
NDNNITLNAWKSKAEVKALLTSNPSTLKFNLNKERISEPLAAPNGRHTSGRFNVSYVASKENFFRRALDRSATPDWNLPI
SMFLEHLDNAAEVDEKDTISVLEGVIEKFDEIKGQVGLAEFDLSRHNLDIVPHLIDQINLEQDPEDCYQVGNGWHYLTSD
ALTDPHEQRMAVILETVSLIVEANTQDYRIMRKGSANPAGRRVLYYFNLPSYMKMERQTEDAFKIHLNAILNQFDVDIDQ
AIPGSSLLSGTLLMTSANHQNISGPVIAVRALLGSTLPQTIPDFFVNLDPTKARLTGSKLIKMHFANGDNICVKCKSTKH
IREACPEKDMVTPKIFRTRAHQGTLPQRGKALASIHAPSTVEPPVQTRKFHHTPATHQWETVGTKSPRHRRTRDTSPQPT
GQKPLRSYYNFEVLSDKTGEDTPEETEQTNQLPSTNQQHGTQNLPINIPASEEDTVPDDQETEQADVSMNGFDTQPDALA
HPEVAPDVTQFLPPATPLNTEATNNGLPHDHTSPNTTNQTQPPPGSIHEGRPRGGHTTSSFSGEPSHTTLGKKHIAVFQT
ASSEVPVQILNPDRSENRLCWLPSQEVAKFIDGRCPTFLSTCHFKVFHDGATLSSVDEIVEPPNSPPNPPRVTTLHEVDT
MLRPGQNQ
>Tad1-20_BG_pol#LINE/Tad1 1944-5696  [Blumeria graminis]
MKGASRRRSPLPKLKFMSINVGRGGPTHDIALSRAFEIGIDVVLVQEPWWSSETKSHPGYTLHIPHGGIGVRPRAVTYTR
TKEKEIFAKQIFPGSSLTGDYCWVVVNNVTFLNVYKAHNDDAAIEPVINWVPPPASIIAGDFNSVYWAWQPGTTRSYGHG
EKIQAWAEQHCLTCLIIGEPTHRAGNTLDLVWTNVAGAQAWVDRSECVTSDHFPVCGLVTSTSHVEAEYXGSLRVPKEKL
PDFVRAVSQWISAPQFLESTSDVERYAEAICQALTDGLKAFGKRRSQGSGRSAPWWTPKCKEAHLNYRSAYTEEERTTCA
KILRSTVASAKREHWKKRIETMRSCSDVYKMMRWAAPKHQKIPPPLQHDGKLVSDQAERAMILRDLLLDRHSETDDLPPC
TRSAEPRIPWSEELSELEAQSCTVGGGNTCPGADGISVELLAACWGSIGKYITQLFQACLRLGYHPACFKLAEVVFLPKS
GRDLSTAKGWRPIALLSCIGKGLERIFAKRMSALAITLDVVGHQQFGALPKRSANDLVSSVVHDVEEARSQGWASTFVTM
DVQGAFDAVLHNRLLWRMQAQGWPDSVLRWTSSFLKGRSVQVRYPGGVTSPRSLRLGVPQGSPISPLLFLLYMAEPMRIG
NCRARFSYADDIGILGIGRSLAESATAAQGEVDHLLKWAEENAVSFDLDKSEVIQFKGRNRGEPVGIQVGGRLVQPAEHI
RWLGIHLDPRLTFKHHVATWCGKALKASQHMRRLNPLQRGAAPGPLVTAIDSCIVPVATFGADVWWPGLTRLTKKGTSTP
QTTHLCSLIDKTIQLALRAALPVWKTSPNVLLHREGGIPPAKILLEGIRLRLAARIQSLDDRHPLRNRASECPNVGSQKY
KLRKRVRRQPETQMSRLQRAFRQLPESSEQAERLAGPVYTSSLGTKEEGVKAHYNWASTISPSDICAYSDGSSEGHGRSS
WGYVLQRGGQTFAQGHGRIHGGEVYDAEIAGAAVALREAIRARKNGERIFVLLDNQAAVLALRTGKSSSSLQITRVFHKF
ASEANATVRWVPGHSKISGNEEADAEARAGLQLLPDRQTQPVQTTQAYIRRLMHNRRQKLVDDWWNKSGPDRYQDLDLQM
RRRKPPELGLPRRLLHRLLAARSGHGDFADYHRRLNHENAKLECVCGQRTSPTHFVRCRKNAAIMRRLRRSMTVEDYTNQ
LLGPEGLEKFIEFARITRCFGSMDADPPSAGCEGRSDYLVRTREMTEGGIG
>Tad1-5_TMe_pol#LINE/Tad1 2552-6568  [Tuber melanosporum]
MLITTLALNVGRSSRNRALAFDLFSFVDLFFIIEPPVDREGQHVPVDVDGWDLFSFVRGSGVEVFVRSHVCGLFEVVRHG
EGSAQIGYWEKGAKKVLAGVYFRPGYTKDQFLRWLDELGEPDIAFGDFNARHQDWDPNADHNNTGGRWLKQWFTAPTRDM
NMVPPTVPTFRDISRIDLCLHRAPYVRHRYMDSAGCEHSAQALKLKVDLPDNIMRRRPAWKKAVWEKVGKQLDALKEVED
ERLWEGVRRVVDALPRASIGRGRCEWWTPELETMRLDVARLRRYSKRKAERTEDYKLVRSVYRACLLRARFEHIRTKIAE
SQDPDIFRLARKLEAKRTLPSMTRPDGSHATTHSDISDLIAQQLSPGGPAPWENSIIDMDSAQEMEIALARSPTNTGPGE
DDIGYPFIRFWKRRDTTTLRRLVDYGLRHDILDWHRAEVVLIPKIDKPRYDVVKSWRMIHLLPTPAKVAERIVLLRLATC
LDLGETQFGSRRKRGVHDAMAVVFEFLRHNEGYKRLILSMDVEGGFDNIDVDLLSDFLVARGCPSNLCQWVRRWTSCRSI
RFRFNGCISKTYYVSKGVPQGSPLSPFLFGAYVADIFTPRMRYSPGVRHLVISYVDDGVIMVAADSCNAARYHAGEIFAD
CDRIARARGMGFSALKTQWIGFGDRAWGGMELLGEMVLPSEDLRVLGYRFNVFLNFSSHVKYWLERGLGVRRRILALGRR
FGSVGGLGAWETYRLVQAAYLPTVYYGLEFVTDHGSYVKQIQVHVNDCLRSVFRTPMRLANNILLAEFGTPPVAVQGRYL
QRRCYSRFINYRYCDRHPWFGEIRHDWKQEGMVAHRQTSDKELTRRPTITIGKGKAVMAARHRSQYLGLCRTSDVVIYTD
GSKSSEGAGVAWAVLEKGALTCVDGCSVPPSWSIVECELFAVVCALRYARGMAKRRPVHVFLDCVPALALVDGMFSEGDS
AELWEVMAPLLNEFSHVNISWVPGHMGIDGNETVDQKAKACVGRPLRPLLWEGVSFGIGHAALARELRKAEWGSWHDREG
HGYYAREPRAPRHLRGLTRMDSYVLLRIRSGTGLVGHDRCEGKDDRHHWTKCPRYAMGRPADEDLYKDSAISRWKSWWVS
HRWLGLGIPRHIEMVDGELVVAGNPFDGTLMVERSGRLATVEDPRTCTRCEKKHDGSGCVLPGLITMPKKWFFLPDQRRC
DCPCCGAAISATPTQKRVTFSEHFEKKPRCLRTCHDWFWHSRHQRWDELDLATRTSVVLRWAKTKGLLKEERCLFCGTVL
AEGYVDLGLHYKRTEGCWDRLYVSFVEYVGQIVLEADRGEGMRRWLGSEMGRRVNPGQH
>Tad1-3_TMe_pol#LINE/Tad1 1636-5022 via tfasty with Tad1-1_TMe_pol, 3 stopcodons.  [Tuber melanosporum]
MEEDRRRDDGEQKIKIKIAQHNCRGSNDVFISLFHVIRNFCISFVCIQDPSLFNGLPLRVPGYEYVFQKTDKVRICMYIS
LRVLMEVSFVLVPSVEDMLHVRVFAREGKLLGPSRSLGIINGYNxRNDGQNSLLAEALFKEMNEPTLVVRDFNVHMTYVD
PLRNLSHTERRQGELYMRTAALNGYAILNTPGIHTRFPDNPILHRPSTIDYSLANTSLLGRVTRWWDITQRTGSDHIVIC
IDIDSEEVEVAKPAPNWKEIRWQGEKGEPNPAIEAMLKDFYENRDGYKVTTMAAEAIDDFQDNLNRLIHMVKELAPMKRP
TRWLKAWWTPEITELRRVYTAAARRVRRDGVGVEERNKARKEYRKALVKAKHDHWVQFLSMAKKNDVWTAHQFTKExVPN
RVPGGLSSTPERAELLIMNYFFPQSVEPVVVKQPMAHGLGNLHPVTPSDITDVLKKCSSNSAPGPDQVPYGVWKGIHGIH
QEIIPAMVQHLLEWGIHPPMLKESTGVILPKPNKDNYNDCASFRVIALMQTFSKIAERVVNSRLMDIAYKMGLYCINQTG
SLPQRSTVDAVLALQHWTREAQFAGKKVSSIFLDVKGGFDNVNHQKLIDRLAENLSVPDYLTDWIRNFIATRNIRLAYPG
SPRRTHEVNKGIPQGSPLSPLLFIIYVKPLHLSDDPTETFTTSYVDDFQITVASTSWERNARLLEAKVQRVNQRAHSLGL
SFSIAKTELMHWRKRREKGPRSTAVVTVNSHRVEPANGTLRWLGFWLTDNGETSTHFTKRLSLTQGAFWRIQRLSGPGMG
LSPYGARRLAKGILLPTLLYGAEVLTPSKTMMGKMQTFWNRVLRWITNAFYATNITVLSAEACLAPISLYVEQVKKMTAV
RIVSAIPENNIATAMLPLSFPTARDFRFPTNRRLAFDNNKGRMRPKTWGSTATTTAQVQLPIDEVAAVASTVLEDGATPM
RPSRLLLVTPTQAKAHFKARERVRNETHKKWVEWQFPPYYKYRPPFRECWYFMTLPKFKASRLHQMRANKSYLVAxTDWS
NQGRDTTCGRCLQCPETFDHVVQCSALAESRRNIPPQVFDVGPESELWKGGKAGKKLMGDFLSYVMENRINFPVKMGVFP
FTRSADLAS
>Tad1-6_BG_pol#LINE/Tad1 1572-5396  [Blumeria graminis]
MKSRRHRSIGPLRLLQINVCRGASSHELALTFANEERFDIVLIQEPYIFTDRQRRITKFNPNYECFTPTDDWSSRPRVLT
YIRKGAGLQVCQQRPLPLMSTAARDLLFLEVTAPSGAKLLVVNVYNAPAGSKNGGEAVRALLDLTFSSNSNRIFLAGDLN
LRHTRWQASSSTNSPLAEPFIRWIDSLNLTLISQLDIPTHSRGSVLDLAFASNPLMLSGAESSIEPELDVTSDHLPIASL
IPWDSRFQEPISRLKISTLDEKLFLSLLELEIAGLENLPVNPKPNSLDFFAKGICTALQNAYRASAQRALGKGTGQPWWN
NDCRNAAQAYRTARRSSANQNDITARKKLLRAAVRRAKRKFFQDKISHANTAKDVFGIVNWHRTVGSFRTPPLKDPTNPG
ASPANTLQDKREVLVRNLLRNASDAIDVPLDTPSVGVTSLPFPDLTLTEIKDSVVRSGNTAPGEDEIPTAILKIGWPLIE
TRVCDLFRGCLQAGHHPACFKTAVLVMLNKPNKTDRSSPRSYRPIALLSTLGKGLERVIARRLSWTAIRAKITASQHFGA
LPLRSATDLTTCLVHDIETALNSKLTASLLTLDVRGAFDSVLPGRLVHRLRDQGWPDNLVKWVASFASNRVAKIRLDGST
GPEFDVSCGLPQGSPASPILFMLYLAPLLHMGTAKTRFGYADDIAFLHTSPSLQENSESLSLSLQEAMEWGIEQGLKFDE
DKYELQHFSRRRLDQQPTNTPMVSAGAITVSENTTRPYTRWLGVLFDKKLSFKWHARTLASKALKVSHALSSLGNTTRGA
PPHLLRRAVDSCVLPIVYYASESWWPGRSRQGPTGRISNRVDSLLQQLSKVVLASARATLPVYRTTPTAILHRESGLQQP
EIALDGRALAATVRLRRLDPRHPLLRRANRVLSSQRATSRFARRVLSLPRSEQINAIAIPPWNPRESREAAQSRVAGPNS
TTTEENKQSFLDFLTTIPFGDIIIYSDGSKQLNGLSGAGFIGYQGGVQVLHQSLALGKGVEVFDAEVKGALEGAKSALAL
PTAKFATDLWICLDNLEVATRLLFPFSGSSQAQFDEFLTLNPKWQDRSRLAHTRRGQIRVRWVPSHASIVGNEAADKAAK
DGCQLPTPDDLAFTYAGLKRWAKESTTQASRNLWRNLLPQHLGYEKLGIISAPTRPKELALPRATLGRILAARSGHGDFA
DYHERFNHENASNYCRCGRRKAPLHCFFCHIAKRRSRLMQGPPSEMIPFILGTYEGGRRFGEWLQETRFFTDICP
>Tad1-14_BG_pol#LINE/Tad1 1725-5582  [Blumeria graminis]
MSDTTDMRVLQINLNKNQLATENALQLAVELKIDIIAVQEPWLIPRHPLSLDYTYTRSVQHNGFIQIFPKFPAQHRPRTM
VYASKRLQNKIKLANNSPQDPDIQILELKDGSSHIELINMYNQDDQAGQRGSTINAHLYHHQISPKTILLGDFNLHHPLW
EPESNATGPSEELVEWIQAKGMELINNPGDGTFHRPHMERATVIDLTIATSRIASRVKDWQVMGDVGSDHFGILFTIETP
SKLNDILKPKARLNFKLADWPNFNLILKENISKCKALQICNEGGINYHSEGIHYLRTGNHLSSCQLEQAAEELTKCISDA
TRASVPLMKFNHISKPWWSPELKLMRKDMSIKHKFLKSNKDSLAAKSSYLEVRNKYFSAIKLAKQEHWNKFLEKNDTRSI
FKAMSYTKERRSMSIPSILSAENTFEESFEGKCKAFRDALFPSPPHADQVEWDNYQPGSWTWPTLTKFELESACSATING
TTPGPDGIPHQIISQAYAAIPNVFFHVYSSLFEAGYHPQCWKQATGIILRKPAKPDYSQPKAYRVISLLNCLGKIMERIL
AKRLGYLAETSELLHPSQIGGRLKKSAVDAALLLTNEVETNRQLNLITSTLFMDVKGAFDHVARNQLLVIMQKKKLPINL
IAWTASFLEQRTLQLEIDGEKESFSDIKTGIPQGSPISPILFLIYIQGLFTSNTVKIISYMDDITLTIASSSLKKNIRIL
EREASKIINFGLKDAVQFDLVKTELMHFTRKKLAQEMAIRLPHGETVQPSQSIKWLGIWFDPSLKFRKHIQIRTSQATQA
FFRMARLANTEKGLSPAALRQIYLACVISIADYGSVIWWKGQNYIADALQKIQNLALRKILGVFKTAPILPMEVEAALAP
PRVRLRKNMQRFALRLSKLSKFHPVNMGVNSHIDLQKPTQLSRINNSITNLIDYDGIEQIKQFIFKPWRQALPYTTTIER
IPKDEAAERHQSLLQQTDWTSTTFIYTDASLMAESTGVGLGFVASGSCSRTQHQFQTNIGSRVLVYNGELEAIVLAMEYA
SQLTLPGHSYQVFSDNQAALYRLKKPSDNPGQACQLRAIAAGKIIQSRNSTINLNWIPGHLSIEGNEMADRLAKAASCLP
PEKEETSFAMAGTPIHHSFQDQWLNYLKNKQKRLKYNPSSYEKKFDWKVNGKIKIPXGTAREVVSAFYQLKIGHGYNMSY
LYKRGLSDSDRCRCGKRETPEHLLLSCSNYRHERRQLINSLNNNQLSMKLLLHTKIGIENTIEYIKKTKVSTRRWHLQRN
ENGGDG
>Tad1-14_BG_gag#LINE/Tad1 154-1722  [Blumeria graminis]
MSKKPISGASPSKNPSSSPPPSSPPPSXSQQPTLKSSIWSDLPAPPAITNPAPAFNSSIDDVFMDFSSDPIAGPSHDGKK
FSGTHLAGDSRKRGCSLNQHSELHRKIQLVSAGTENSSXNSPQDALLAARDNIIQAYGLTRNRNEQDKLLDLLEIFREFT
EKGQLSKASAIITSQIANLEQATRKIESKARDLEAVPSPSKTIEPVVPKAKTQPKASNPMSFANILASTSANYNAKPQEW
TIVGGKKNNQANQQAKPSKPVEKKVRRLILVRGPESPIIPSPLVARNALNKAFSDRGIKGPVVNLVSSTTANNVSITTTE
EYTADFLLEKRDIWDKLIPFTFAQVDKPWHKVVVHGIPIQDFDNPDGMEMIKDEIKTFNKGFTPIGTPYWLSSRENRTIK
RAGSVAIAFATEEEANKAIRNRLYLAGISVRVEKFYNVAPSTQCSKCQGFGHLDSYCRKSAVCGLCGDNHSTQQHYCSVC
KSKGKSCSHLAPKCANCSGQHQSNSKSCEVFLAVKNKLDQEEL
>CauliV1_gagpol?#LTR/Caulimovirus 21-3761 [Vitis vinifera]
MSRRSSDSQDTVVNSEEINYPKIQNDLDDWKLPKVSNQEIYKKGTFKFFTDYTIKTSEMTVSLEQDDQVIRLLDNRSVEK
HKKDGYNFIHFGMIQVAAKPLTRLGLNTAIVMCLRDNRHLEYRDSIIGAVQAGLNDGPVYFQCYPNFTVRLRDADILDSV
VLHIKTHGFKIKPGNSPVSIITRFAYKSMNTSVGSGALCTSPKGETTYFHSDMLDKSDFIIPKKILWKDVDFPENWHFAN
AVPAIAQRSESIEQIVQYPDGGGELVFSKSFRHSSSPRVSVYEPSRASSSSIPVRTTREEEGSSSGNPKNVKLTGVRSYT
NVARPFYSEENESTQESQQDESPVMSPTYSQMINTISLSDEDFEINKDLLRKDFYSEVNKQRNDWFFSTVPKVIRTIYQE
EFYAYLRQEKKNIKFWIWFELFKQEEYPDYPFKRIKVTSSNNENKPYEFSKDFQENPQVNQAFVDRINQKIKDNLVTPLT
VQPDKRINMVKGDISSEEEADELIKMFEEPHNQIINNLETFKTRNYYPRPTFPDMQFEERNQYTQASYTSGTIYEWNIDG
MTEYNILTKLQEMTMVSTAYKLNNRLPDHAVAQTIVAGFTGQLKGWWDNYLTFDDKNSILKAYRINESNEVVKDEDGQDI
EDAVATLIYSISKHFIGDPAKIKDKTADLLTNLKCPKLHDFRWYKEVFLTKVMLRSDCNQSFWKEKFISGLPKLFSERIR
IKIREQYNGQIPYDKLTYGEIISIVTGEGIKLCNDFKLKQQMKNEQKIYKNEFGSFCSQFGFSQKETMPPSKQKPSRKPS
KDKFYHSKRGTHDNYRMNDTKHSRHVQRRVNKDTQKKVETPLDVKPIICFKCGKVGHYKKDCRVKQKINNLSVSDDLKNM
LCKVMLNSDSESRTDSDNEDDINQLDSSGDVSSQSSSDQDVCIKGNCNCRPKTINVISQDQEFILDTLRKVEDEKTKQNL
YEVFKKSVVKVEAKKTVNPYNLNDILNRFDQQSPKDVSIKELHEEVKQHKKEIKELRQFISLGLSDLQDQINRIGNQEIH
TDIPESSHVNDNETNTFLNTVSRVIFQRWEISLTIVVKDKFVFDIIALIDSGAAENCLQESLVPIPLCEETSESLFGANG
QRLAIKYKLTDVHIRNHDICIKQTFILVKNLKEKALLGIPFLSSIYPLWVDNQGIRTKLFDKEILFEFANPIGCITPLNQ
EINLVGLDVPSKIIGNQFMHNDIINDILSISLCISKFQIGILNQEFY
>ATCopia40#LTR/Copia 119-4090 Wised via estwise with ATCopia78 protein [Arabidopsis]
MLNNTNYTVWCMRMEAALRVHKVWGTIDPGLEDEEKNDLAXALLFQSIPESLILQVGKLKTSKAVWDKIQSRNLGAERVK
EAKLKTLMAEFDKLKMKDNETIDECAGRLSEISTKSTSLGEDIEETKVVKKFLKSLPTKKYIHIVAALEQVLDLKNTTFK
DIVGRIKTYEDKVWDDDDXLEDQGKLMYVDLGSHYMSQEGGRGRGKIRGRGRGRGRVGYKQRDHSKVTCYRCXNYASNCP
DRLLKLIKLQERQQEAEDDDDDEVESLMMHEVVYLNEGNMNLEIYEACSDKAWYLDNGASNHMTGNRDWFCKLDEMVTGK
VKFGDDSRIDIRGKGSILFLTKNGEPKTLANVYYIPDLKSNIISLGQATEAGCDVRLKDNYLTLHDRDGNLLVKATRSRN
RLYRVELKVKNTKCLQLAALNDLTKWHARLGHINLETIKAMVTKEFVIGIPSAPKEKEICASCMLGKQARQVFPKATTYR
ASQILELIHGDLCGPISPPTAAKRRYILVLIDDHSRFMWSFLLKEKSEAFGKFKTFKATVEQETGEKIKTLRTDRGGEFL
SQEFQTFCEEEGIIRHLTAPYTPQQNGVVERRNRTLLGMTRSIMKHMSVPNYLWGEAIRHATYLINRVGTRALINQTPYE
ALKKKKPNVEHLRVFGCVSYAKVEFPHLRKLDERSRILVYLGTETGSKAYTLLDPTTRKIIVSRDVVFDENKSWKWANSE
LIEIQKEPGMFTLAQTEFHNNEEVENETSEEIEENEAEDSTNKDAEDGLDEPSVPEPNHSDDVPVFTRSGRQVIKPAHLN
DYVLLAEIEGERLLLLINDEPWDFKEANKYREWRDACDEEIKSIIKNRTWSLVSLPVGIKPIGLKWVFKIKRNSDGNITK
HKARLVAKGYVQKHVVDFDEVFAPVARIETVRFIIALAASNGWEVHHLDVKTAFLHGELKENVYVTQPEGFVTKGSEEKV
YKLHKALYGLRQAPRAWNIKLXRFFRSCXFERCSKEPSLYRKQEGKHLLIVAVYVDDLLVTGSSPKLIDDFKKGMSKNFE
MSDLGRLTYYLGIEVTQEEDGIILKQERYAKKILEEAGINECKSILVPMNSGLELSKALDEKSIDGQQYRRSIGCLRYLL
HTRPDLSYSVGVLSRYMQDPRESHGAALKQVLRYLQGTTGYGLVFKKGDKTGLVGYSDASHSVDADDGKSTGGHVFYLNE
CPISWCSQKQQVVALSSCEAEFMAATEAAKXAIWLQDLLAEVIGTPCERVTLRVDNKSAIALTKNPVFHGRSKHIHRKYH
FIRECVENGQVSVEHVPGVKQRANILTKALAKIKFKDMRDLIGV
>ATCopia38B#LTR/Copia 108-4472 ATCopia38 and ATCopia38A close. [Arabidopsis]
MVTVARVTRKSTRSKAGTSSVTRKSRSTGAVTTPPNSPPVNRSGASRALTSSESGDPTQSPFFLHSADHPGLNIISHRLD
ETNYGDWSVAMLISLDAKNKTGFIDGTLSRPLESDLNFRLWSRCNSMVKSWLLNSVSPQIYRSILRMNDASDIWRDLNSR
FNVTNLPRTYNLTQEIQDFRQGTLSLSEYYTRLKTLWDQLDSTEALDEPCTCGKAMRLQQKAEQAKIVKFLAGLNESYAI
VRRQIIAKKALPSLGEVYHILDQDNSQQSFSNVVAPPAAFQVSEITQSPSMDPTVCYVQNGPNKGRPICSFYNRVGHIAE
RCYKKHGFPPGFTPKGKAGEKLQKPKPLAANVAESSEVNTSLESMVGNLSKEQLQQFIAMFSSQLQNTPPSTYATASTSQ
SDNLGICFSPSTYSFIGILTVARHTLSSATWVIDSGATHHVSHDRSLFSSLDTSVLSAVNLPTGPTVKISGVGTLKLNDD
ILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLDVGDQSISVNAVVDISMWHR
RLGHASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIV
DDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPELKFTSFYAEKGIVSFHSCPETPEQNSVVERKHQ
HILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPR
SRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHEEVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPSQIS
DLPPQISSQRVRKPPAHLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYINNITKIPIPTNYAEAQDTKEWCEAVDAEI
GAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASK
KWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDH
TLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQST
GMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKG
TVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFT
LLVSLQASPPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVADILTKPLFPYQFEHL
KSKMSILNIFSCSS
>ATCopia43_env#LTR/Copia 6011-7501 [Arabidopsis thaliana]
RIWFSVLQPVLVFVLFLGFPLMRSCLLNLAALTEGSFSFSATQTSKFKGFLSLKTQVTMNQEATSLTGVSGAGQPSAATP
SDPPPPPVAPMFIPKTEPGICMSKKTKSKVSAPTQRKRQCTAASAKSRSKAPAPALRRLSSRKSNRSASAAGQTEELVRD
SSDLQDGDVTEIAPPLFLSRYRENRRLLAVRDRKYPELKFPSETPYSSCFLTEEGLGRYKVIGNRCFNDMRFLPLDGNNT
ASTQQLLFNAGLLPTVTEIDSYVHEVVMEFYANLPDGEEGDQLAYSVFVRGNMYEFSLAIINQMFQLPNPSYPLDGMSEI
QVPESMDEVAIALSNGKANSWKMLTSRLLSPELALLNKICCHNWSPTVNRSVLKPERMTLLYMVAKALPFNFGKLIFDEI
WACSNAVANPSSTLRLVLPNLIDQMLRFQRIVRSDEGDTTSSAPLKFTMEVKPVPVLQSDSPTLDAALETLIASLTTMRV
RLAGKPLSLNLHSVIF
>ATCopia50#LTR/Copia 67-4161 Wised via estwise with ATCopia32 protein [Arabidopsis]
MSSARVEMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALMEEKRQKARSTIVLSV
SDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAIL
LLMSLPKQFDQLKDTLKYGSGRTTLSVDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKGNKGRSRS
RSKGWKGCWICGEEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNTSEGSGYYVSEALHSTDVNLGNEWVMDTGCNY
HMTHKKEWFEELSEDAGGTVRMGNKSTSKVRGIGSVKILNKDGTTVXVKYIPDMDRNLLSMGTLEEHGYSFESKNGVLVV
KEGTRTLLIGSRHEKLYLLQGKPEVSHSMTVERRNDDTVLWHRRLGHISQKNMDILVKKGYLDGKKVSKLELCEDCIYGK
ARRLSFVVATHNTEDKLNYVHSDLWGAPSVPLSLGKCQYFISFIDVYSRKTWVYFLKHKDEAFGTFAEWSVMVENQTGRK
IKILRIDNGLEFCNQQFNDFCKEKGIVRHQTCAYTPQQNGVAERMNHTIMEKVRRMLSYSGLPKTFWAEATNTVVTLINK
TPSSAVNFEISDKRWSGKSPVYNYLKRFGCVAFTYADEGKLVPRAKKGVFLGYLSGEKGYKVWLLEERKCSVSRNVTFQE
NAVYRDVMQKNKDSEEVDTSSRSLDIDLEDVGDLSLGGDLLEXNMIPGXHSPAQDHHHTEDAEINEETVPETPNSYHLVR
DRVRREIRAPKRFDVEGYYSEFTDDEEESFNVEALVTTVDGDTREPXNYQEALRDDDXELWKVGMDEEMDSLLKNHTWTV
VKKPVGERVIGCKWIFKRKPGTPGIEQPRFKARLVSKGYAQREGIDYTDIFSPVVKHVSIRILLAIVAEENYELEQLDVK
TAFLHGDLEEKIFMEAPEGYESQFKQGEVCLLNKTMYGLKQSPRRWNQKFDSYMLEIGFERSPRNKCAYIKSLEDGSKVY
LLIYVDDMLVAARDMQVISELKQKLSEKFEMKDLGAAKRILGMEISRDRVKGTLTLSQEDYLSKVLETYNVDQCKFVVTP
LGAHLKMHAATEQQLLSDEEYMKSVPYSNAVGSIMYSMIDTRPDLAYCVGIISRFMSKPVKEHXLGVKXVLRYIKGTLNM
KLCXKKGADLTLRGYCDSDYAANLENRRSISGMVFTLGGSTINLRSCLQKVVVMSSTKAGYMSLTEAVKEAIWLKGLLQD
FGYEQKTVEIFCDSQSAIALSKNNVHHDRTKHIDIKYHKIREVIADGVVEVKKICTLVNSADIFTKVVPVSKFKTALHSL
RVKTE
>ATCopia45#LTR/Copia 112-4209 via tfasty with ATCopia78_2-4077, 2 stopcodons. ATCOPIA97I close with a large deletion and too many frameshifts and stopcodons. [Arabidopsis]
MGDIVPVTNNTKEGSSSSSIQCPMLTATNYTFWTIRMTMALKVHKVWETIEEGLDDIDKNNMASALLLQSIPEALTLRVG
KLKTAKKIWDAIKARNLGADRVKDARLQTLMGEFERIKMKETEKIDDFAGRLSELSTKSADLGNDIEEPKLVKKFLNSLP
RKRYIHIIAALEQVLDLNTTSFEDIVGRLKAYEERICDEEDNQDDQGKLLYANSEEKSAQNNWNPNKGKSQGGRGYGRGR
GRDRFGNAQGNRDMTNVICYRCDKLGHYASDCPDRLLKLQETQDVKNDDTQKADALMMHEVVFLNEKNVMPNKLEASLDV
DNVWYLDNGASNHMTGNLAYFGEIDERVTGKVRFGDDSRIDIKGKGSITFIAKNEERKILADVYYIPDLRSNIVSLGQAT
ESGCDVRMRDDHLTLYDRDGKLLIKATRSRNRLYKVIMEVDDTKCLQLESLSETTKWHARLGHIGTDNLKRMMQKELVIG
IPNIKVEKEMCGSCLLGKQARKPFPQATPYRATSILELLHGDLCGPITPSTVAxNRYIFVLIDDYSRYMWSLLLKEKSEA
FNKFKSFKACVEQETGATIKTFRTDRGGEFVSQEFQAFCDASGIKRHLTAPYSPQQNGVVERRNRTLMEMTRSILKHMSV
PNYLWGEAVRHSTYLINRVATRTLVDQTPYKVLKSKKPNVEHLRVFGCIGYAKAEAVHLRKLDDRSRMLVHLGTEPGSKG
YRLLDPTRRKVIVSRDVVFDEEKRWKWNNSEDEINNVPGMFSLSFEEFGNNGIREEDDITEETEINDGENHDREAEIPTQ
AIETVEQxVEPQVTLRKSVRVISKPSYLDDYVLLASIECERLLLMINEEPWDYNEAKELQEWKKACVEEIASITKNHTWD
LVDLPIGAKPIGLKWVFKLKRNSDGSVNKHKARLVAKGYVQRHGIDFDEVFAPVARIETVRLIIALAASNGWEIHHLDVK
TAFLHGELKEVVYVSQPEGFVIGGSEDKVYKLNKALYGLKQAPRAWNNKLNKILMELKFTKCSKEPSLYCRRDKDELLVV
VVYVDDLLVTGSNLQVILEFKEEMAKKFEMSDLGKLTYYLGIEVFQHEGGIMLKQERYANKILEETKMDDCNAVQIPMDA
NLKLSKAQEEKNIDEKEYRRNIGCLRYLLHTRPDLSYCVGVLSRYMHEPKESHGAALKQILRYLRGTQSFGLCFKRMNKT
ELVGFSDSSHNVDEDDGRSTTGHIFYLNDCPITWCSQKQETVALSSCEAEFMAATEAAKQAVWLQELLEEIVGKTCKQVL
ILIDNKSAIALTKNPVFHGRSKHIHKRYHFIRECVANEQVEVEHVPGTEQRADILTKALGRIKFKEMRDLVGVQDMTKCS
FKLKGE
>ATCopia10#LTR/Copia 53-4138 [Arabidopsis]
MATTTRVEIKAFDGDNNFSLWKIRIMAQLGVLGLKGTLTDFALTKTETLTKSEEKQVASGDESSDSSAVLTKEVPDPIKI
EKSEQAMNIIINHISDTVLRKVNHCKTAATLWELLNELYMETLLPNRIYAQLKFYSFRMMTSKTIDQNVDDFLRIVAELG
SLDIKVAEEVQAILILNSLPVTYDQLKHTLKYGNKTLSVKDVVSSSKSLEREMAELKENTKVVNTTLYTAERGRPQTRNQ
NGSQGNNQGNNQGKNQGKGKSRSNSKSRVTCWFCKKEGHVKKDCFARKKKFENEEQGEAGVITEKLVYSEALSMHDQEAK
EKWVIDSGCTYHITSRMDWFTDFNENESTLILLGDDHTVESRGSGIVKINTHGGTIRMLKNVRFVLNLRRNLISTGTLDK
LGFKHEGGDGKIRFYKENKTALRGNLVNGLYVLDGHTVLNESCNAEGSTKRTSLWHCRLGHMSVNNMKILTEKGLIEKKD
IKELGFCEHCVMGKSKKLSFNVGKHNTEDLLGYLHADLWGSPNVTPSLSGKQYFLSIIDDKTRKVWLMFLKTKDETFDKF
CEWKELVENQVNKKIKVLRTDNGLEFCNLKFDEYCKKNGIERHRTCTYTPQQNGVAERMNRTLMEKVRCLLNESGLDESF
WAEAASTTAYLVNRSPASVVDHNVPEELWLGKKPGYKHLRRFGSIAYVHQDQGKLKPRALKGVFLGYPQGVKGYKVWLLD
EEKCVISRNVVFDEDSVYKSLLPESDKEQIDGKLSKETTVTVNDSVKEKGESSASGGAIEEISDSSDSEVAATEEDSPIQ
TVNLENYQLARDRTRRVTRPPTKLSDYTHFAYALVMAEELGEEEEPQCYHDAQNDKDWEKWNGGMSEEMDSLLKNETWDI
VDRPKDQHVISCRWLYKIKPGILGVESKRYKARLVARGFTQKKGIDYEEVFAPVVKHISIRILMSIVVADDMELEQMDVK
TALLHGELDQVLYMEQPEGFEADPNKDQVCLLKKSLYGLKQAPRQWNKKFNAFMMDQGFTRSLHDSCVYVKEVIPDQFVY
LLFYVDDMLIAGKSMAEVNKVKEGLSLHFEMKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTP
IGAHFKLSAVRNNDESVDTEVCPYSSVVGSVMYAMIGNRPDVAYALGLVSRFMSNPGHMHWESVKWLLRYLKRSMDLKLV
YTKGKDMKIHGFCDSDYAADLDKRRSISGYVFTVGGNTVSWKSSLQHVVALSTTEAEFMALTEAVKEAIWIRGLLDDMGL
KPEAASVWCDSQSAICLSKNNAFHERTKHIAVNFYFIRDIIEAGDVEVEKIHTSRNPADMLTKVILVHKFEAALDHLKLL
K
>AACopia1#LTR/Copia 194-4087 [Aedes aegypti]
MADAKFSIPKLNGTNWATWKLRVENLLARDDLWDVVVEEVPDEFDRDDDWKIANRKAKATLVLLLEDSQLAIVKKCVFAH
DVFGALKAYHEKSTRSVRVSLLKKLCAINLSERGDLEQHLFEVDDLFDRLDAAGTTLDADTKICLLLRSLPPSFDGLVTA
LDSRSQDDITLEVVKSKLMDEFQRRLERDGHPVKKEKAMKTAVTKTGETRVCFYCKKPGHLQRNCRKLLETKKEENNSSS
SGTKPKKSDSVKAKAVHSDTRGIAFVVNGENARSWIIDSGASAHMTCDKSFFTTFEESCGGYITLADGKKTQILGEGAGV
LHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDPKGNVVATGVRCGGLYHLRQAESSLQAA
GGQHHENCQHLWHRRLGHRDWAATERINKEELATGMKVGDCGLRLVCECCLEGKAARAPFPSIVERKSTRILDIIHTDLC
GPMKTTTPSGNRFVMHLIDDYSRFTVTYLLKHKSEAAQNIIDFVKWTENLFGRKPSVIRSDGGGEFDNKLLRDFYRANGI
KPQFTTPYTPQSNGVAERKNRSITEMATCMLLDSGLNKRFWGEAVLTATYIQNRIPSRSVPKTPFEMWWGRKPDLGHLRV
FGSPAYVHVPDVKRSKMDPKAKRLIFVGYSIEHKGYRFVDTETDCITISRDARFIEQENGTSSVEIPASENGTSKKQANG
EINPNPFKEETDTEEISEEEEFSTPRAESSGASGPVRRSARENRTIPKHLEDYLLEYAVGIAACAVEEPDNHLEALESAE
WRTAMKDEMDSHQRNGTWELIHLPPGRKPVGSKWIFKVKRNQEEQVVKFKARVVAQGYSQKDGIDFDQVFAPVTRQATLR
LFLTIAAKQKLIVQHLDIRTAYLNGVLEEEVYMRQPPGFTVKGKEEYVCRLRRSIYGLRQSARCWHKKLNEVLTKYGFKS
SAADQCLYTKNTDGVKVFLIVHVDDILVASAEEANVKREFENLGREFELTCLGEIRHFLGVEVLREDGVFKIRLKQFIDK
LIIKHGMENAKTTRSPMDIGFLKDGANSEPFEDVTLYRSLVGGMLYLSVVARPDIAASTAILGRKFSEPSQADWTAAKRL
LRYLKATRHYFLRLGGAAEDPLVGYSDADWAGDPVSRRSTSGFVFLFAGGTVSWASRRQTCVTLSSMEAEYVALAEACQE
TIWLRQLLRDFGEPQLQPTTMKEDNQGCIAFIKTERSSKRSKHINTKERFVQELCEKNEIVLEYCPTEIMIADVMTKPLG
PQKHGDFVVKLGLEDPQ
>CAULIV-1_Mad_env?#LTR/Caulimovirus 5840-7156  [Malus x domestica]
MSNKNTASPQGSSQQRRLPASLPPPKQEPIPGSSALAITNRFTPLGSTLGSIRPNYQTALVNQYDPFSSTYRQSPSPSVS
YTKTSPYVIKPSKEYLFSIPFNYKHLKTPEVIAKKMFPTNSHFQPSEFHKTLKYYTTILNETSSITIKPIFDKTPGNQNR
ILYHSLTINKFLLESEWGVPLFQPKPFKSSSFPSHSNHYTYFDYIQAWTNIFLHQSEDFSHSWFITFDRSFRLNFPAWFP
RWWSEHGLISDLMPDEFKQVLSGTFQKKFDRTRFDEGIPLFALFMAKYKVPWILRWNYEIESNQVFRQRMIKWWDKFNHQ
KIIEVVLRDFPMDSNSSTCSSSSSSXALPEPTKEEIESLSDISPSSSLKGKAKSSKSSSSSKKKKSSKLKALAKILMKEL
QEENEDSSDSDNSSDASSQRAVATQGNIFPPDSQDPYEF
>ATCOPI1#LTR/Copia 15-4345 [Arabidopsis thaliana]
MEIRSMAPYTVPPLNISNCVTVTLNQQNYILWKSQFESFLSGQGLLGFVTGSISAPAQTRSVTHNNVTSEEPNPEFYTWH
QTDQVVKSWLLGSFAEDILSVVVNCFTSHQVWLTLANHFNRVSSSRLFELQRRLQTLEKKDNTMEVFLKDLKHICDQLAS
VGSPVPEKMKIFSALNGLGREYEPIKTTIENSVDSNPSLSLDEVASKLRGYDDRLQSYVTEPTISPHVAFNVTHSDSGYY
HNNNRGKGRSNSGSGKSSFSTRGRGFHQQISPTSGSQAGNSGLVCQICGKAGHHALKCWHRFDNSYQHEDLPMALATMRI
TDVTDHHGHEWIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPITHTGSGSIASSSGKIPLKEVLVCPDIVKSL
LSVSKLTSDYPCSVEFDADSVRINDKATKKLLVMGRNRDGLYSLEEPKLQVLYSTRQNSASSEVWHRRLGHANAEVLHQL
ASSKSIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSPTSSVQGFRYYVVFIDHYSRFTWFYPLK
LKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFISSQFLKHLQDHGIQQNMSCPYTPQQNGMAERKHRHIVELGLSMI
FQSKLPLKYWLESFFTANFVINLLPTSSLDNNESPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVFLGY
NEKYKGYRCLYPPTGRIYISRHVVFDENTHPFESIYSHLHPQDKTPLLEAWFKSFHHVTPTQPDQSRYPVSSIPQPETTD
LSAAPASVAAETAGPNASDDTSQDNETISVVSGSPERTTGLDSASIGDSYHSPTADSSHPSPARSSPASSPQGSPIQMAP
AQQVQAPVTNEHAMVTRGKEGISKPNKRYVLLTHKVSIPEPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPYSPNMN
VLGSMWVFRTKLHADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILHVATVLKWELKQMDVKNAFLHGDLT
ETVYMRQPAGFVDKSKPDHVCLLHKSLYGLKQSPRAWFDRFSNFLLEFGFICSLFDPSLFVYSSNNDVILLLLYVDDMVI
TGNNSQSLTHLLAALNKEFRMKDMGQVHYFLGIQIQTYDGGLFMSQQKYAEDLLITASMANCSPMPTPLPLQLDRVSNQD
EVFSDPTYFRSLAGKLQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKRILRYIKGTVSMGIQYNSNSSSVVSAYESDY
DLSAYSDSDYANCKETRRSVGGYCTFMGQNIISWSSKKQPTVSRSSTEAEYRSLSETASEIKWMSSILREIGVSLPDTPE
LFCDNLSAVYLTANPAFHARTKHFDVDHHYIRERVALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRFKLGVDFPPTPS
LRG
>ATCopia4#LTR/Copia 62-4486 [Arabidopsis thaliana]
MGSSANGLPATTDEAIVFTPQTIFNINTSNVTKLTSNNYLMWSLQIHALLDGYELAGHLDGSIETPAPTLTTNNVVSANP
QYTLWKRQDRLIFSALIGAISPPVQPLVSRATKASQIWKTLTNTYAKSSYDHIKQLRTQIKQLKKGTKTIDEYVLSHTTL
LDQLAILGKPMEHEEQVERILEGLPEDYKTVVDQIEGKDNTPSITEIHERLINHEAKLLSTAALSSSSLPMSANVAQQRH
HNNNRNNNQNKNRTQGNTYTNNWQPSANNKSGQRPFKPYLGKCQICNVQGHSARRCPQLQAMQPSSSSSASTFTPWQPRA
NLAMGAPYTANNWLLDSGATHHITSDLNALALHQPYNGDDVMIADGTSLKITKTGSTFLPSNARDLTLNKVLYVPDIQKN
LVSVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDELYEWPVTNPKATALFTTPSPKTTLSSWHSRLGHPSSSIL
NTLISKFSLPVSVSASNKLACSDCFINKSHKLPFSISSIKSTSPLEYIFSDVWMSPILSPDNYKYYLVLVDHHTRYTWLY
PLQQKSQVKSTFIAFKALVENRFQAKIRTLYSDNGGEFIALREFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTL
LTQASVPREYWPYAFAAAVYLINRMPTPVLSMESPFQKLFGSKPNYERLRVFGCLCFPWLRPYTHNKLEERSRRCVFLGY
SLTQTAYLCFDVEHKRLYTSRHVVFDEASFPFSNLTSQNSLPTVTFEQSSSPLVTPILSSSSVLPSCLSSPCTVLHQQQP
PVTTPNSPHSSQPTTSPAPLSPHRSTTMDFQVPQVRSSSPLLSSSSSLNSEPTAPNENGPEPEAQSPPIGPLSNPTHEAF
IGPLPNPNRNPTNEIEPTPAPHPKPVKPTTTTTTPNRTTVSDASHQPTAPQQNQHNMKTRAKNNIKKPNTKFSLTATLPN
RSPSEPTNVTQALKDKKWRFAMSDEFDAQQRNHTWDLVPHESQLLVGCKWVFKLKYLPNGAIDKYKARLVAKGFNQQYGV
DYAETFSPVIKSTTIRLVLDVAVKKDWEIKQLDVNNAFLQGTLTEEVYMAQPPGFIDKDRPTHVCRLRKAIYGLKQAPRA
WYMELKQHLFNIGFVNSLSDASLFIYCHGTTFVYVLVYVDDIIVTGSDKSSIDAVLTSLAERFSIKDPTDLHYFLGIEAT
RTKQGLHLMQRKYIKDLLAKHNMADAKPVLTPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAYAVNRLSQL
MPQPTEDHWQAAKRVLRYLAGTSTHGIFLDTTSPLNLHAFSDADWAGDSDDYVSTNAYVIYLGKNPISWSSKKQRGVARS
STESEYRAVANAASEVKWLCSLLSKLHIRLPIRPSIFCDNIGATYLCANPVFHSRMKHIAIDYHFVRNMIQSGALRVSHV
STRDQLADALTKPLSRAHFQSARFKIGVRQLPPS
>ATCopia2#LTR/Copia 518-4496 [Arabidopsis thaliana]
MQGFITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLALNSAEVVPITANV
VTHRNTNTNRNQNNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQS
TSPFTPWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDL
NKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSW
HSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVI
FVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSER
KHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKL
EDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPA
PPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPS
PNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQK
YSYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVA
KGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAI
YGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL
HYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLS
YAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSS
KKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQ
SGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVPPSCGG
>Copia-4_BG#LTR/Copia 5-4738  [Blumeria graminis]
MSPALPSAITSSPESRSTMSHSTKGIMLNDGVPFESWRTLIMAKLAKRDLVGHVFHDEKGFRPEVEPEVPIARPSESSES
YARRMTEYEAELRQWARGEIQAYQTIIDRLDPSIRPTQRRNVTAKQLFDEIAEARVPSTTLPYLHAYETFSLTTLMTTAD
DYCSRFTKNLQEVNIAADVITARPDPDGNNIANDYKITPGQASGYFIRGTKGVEWLDTWRQTRTSGHNGRLQPLGSLMSS
LREAESSIQRARRNIVASIPQLINPEARCRMCRHKHMNKECFKQHPELASVNRWEGQNKPKGKARNGKGKGKMVLEGSDT
DSESDDQRDGGVLTGLAASCQRYNQHYIYDTGASHHFVSVKKYFTSLQIRQSPFKFDQAVGTTSLNRQGTARIEIGDLCL
NLRECLYSPNSFSNIISAGRLMRIANIFPDFENKVLYRCRQGCPNIPMAKLHLKNDVYYIVPLKTGKSDKKIIAAPGIAQ
IPHLTSAQRWHQRLGHIGQLIFKKTASISKGLEGIDTSELATCETCHLSKAQQQISREPRPTPNEPLDEVFVDTVGKITQ
SLNGHQYAVILTDAKSRMRWVLICNTKDQISPSLVKWAESMHHQFGKRVRTIFRDGGSEFSKTKSYCEEHGIRTDISAPE
TPEQNGASEAANKVVLRVARSFLIDARMPPSYWPWAVQHACFVVNRLYCIRTKKVPIIDFLQGLRQPHPEKIDFRNMPRF
GCRAYKLISPKPGKFESRAEKGWFVGFQANTNKNYLIYHPHKTPVQGWKWIESFTPHATFNEDIVFGDELDLNNRKFASE
YWQNENILFTDQVRPINKPTLPATNTTRLPFESEGEHLQGHKSQHPQMRQQGFQSQHPENRDNQQTTRDDPQTEPEAQQG
NSPSHHYLPSNIQPPVPHSTLNVTPKKVMTQPQNVPPVIRADTSLNIPVNRSLDISQDMTASSTPQNPPISWQHTEMEPV
AIQPDDEPDSSMESEYDYERQSSNPNDKYTSPEISRALENGEATPTDNQGEPVSVFETEEAPLDKIMTGWDPLPPVAGQK
RPHSPVSGRTRSKRGREVKQADYYRLHHGLSANQNIDPKTWEEAMTSPEAHFWKRAARDEIRSLKETGAIKIIPRTAMPK
GRTPLRCKWVFKKKFRADGSIDRFKARCTAKGYTQRPGIDYHETFAPTPRPETGRIMLVLAYQLGWHRCQGDVPTAFLNP
KLKIDLYMDLPQGFERDGQVIHLQKGLYGLKQAAALWYDDAKATLAGLGLYPTQSDVCLYTTSQKDLFVLLHVDDFQVMG
PNRTKIENLMHALHKRYKLKTVDTDLFLGINIKQGNKSLELSQGQYARTLLERHGLGNCKPVNSPLERLLEQSDSECSAQ
LKAEYNSIIGGLQYLSNNTRPDITFSVNHLARFLANPSIEHLQAARHILRYIARETNKGITFSKGKGRPVLEAYSDADFA
SDQSNSRSTSGMLIKLGFGPICWKSHLQREVVLSTTEAEYLAATETCRQLQWVKSLFEELKITNLIEGAECTALYVDNQS
AISLIKNHDNHKRSKHIALRNFYCRKQYQQGKITVSYVQSANQLADSLTKVKSPVSIN
>Copia-3_Trm#LTR/Copia 188-4505 via tfasty with Copia-4_Trm, 67.6% SW:2183, 1 frameshift and 1 stopcodon. [Tremella mesenterica]
MSSATVKDERKLSSRDNFALWDRALRVALGSAGHISHILIESSTLLDEVRSRYPLSTPPTTTERSKRLVAEFNLKKDQAT
AFSILYGSLTETVQNKLPNEKADFASPDPRALYIHIVKKYGASNGSRQAEPWGSIFGDTIPENDDPEPHLTTIRSHIAEI
TAAAASLSVKDFADSVGAYAAIRKLRSSYGMLASTFYQGATAHTLTLDEVIDRVSEEHRRRENKGESVNEHGLVVARKKP
VEWKKPVESKSCQYHPNATSHATEESRNKGKSGTDEGNKKKKDKQMGKAMKATVGPREDSNASSDEETTRQSLLSTKFAF
RAEELGNTFIIDSGATSLFVKDKHLLSNLRPLPSPITISIGNGQTVMGTHSGRLSFKNVFYDRSIYVPNMAFNLLSTQRL
GSKGNDHEWRFSKAKGARLVNEEGRVVLQGHWSKGLWVIDEEPVRQLSSTHIALKAQEGADKEDHLLHWHRRLGHTDQRK
VWELGRAGKLGTLRSWSETFSPTECTYCLQGKATRSPSSPNTRRATKPLVRVSVDLWGPATTVSGEGFKYFLTCYDNHSK
YVHVTPLRSKAATFEALKTYINLAENQINCTVKALLSDQGGEFSSIQMRTWCQLKGIEHLHTPTAAHNQNGRVERMHLTL
LNDVRTCLLDARLDKMYWVDALKYSVYNRNRLPDRKGISPLEKFKPDTDSRINYTQFWSFGQHCIFRKASQQSKLESRGE
LGRIIGYGPTGDFIILTEAGKITISGDVTVRHLSSVETSTGCHNDTAIVEESELNSHDTPIISPPSERTRRTDLNEPDQD
PSGQVSLSVQPESSRTQLxRRTSGRNVASRHRGWVEEPYSREGAPSPEPLPNEGNDGSNTRRDESRRSNRLAGEQPSHTP
LHDINMNYRLSAFEHALSAQVLTNPQTYQEARNSADWEDWRIAMEEEMSKMNRYGVWEVIPNNGQRTLSGKWVYTRKIDG
NTGKPSAYKARLVVRGFQQISGRDYDELFASVTHKASFRVFLSIVNYMGWHCDQMDVIGAFLKGDIDRDIFVNPPEGSDI
PAGYILHLRKSLYGLKQSPHLFNKKLRQFLVQLGFTSCLADPCIYSYNKNGVRFMISVHVDDMLVASNNRVELDKLKAKI
HEELECKDQGPVSYFLGINIYRDLANRKMYLSQEHYIEAILDKFAENGKPCRTILPVNLKLVEATPEEIKEAQHKPFPAL
AGSLLYIATITRPDIAYAAGLLCRFISKWSLTHWRAAKHLLRYLRGTSDLALTFDATAGKRALLGWADADWGGCLDTRRS
TTGFVFSTYGGIVSWKSRRHPTVALSTTQAELLASTEAGKEAVWLRQLLADLELGPADGEPVEILNDNNGAIQLAKHQHG
FKLNKAFDMRAQWIREHQDARIIQLRYTNTSSNRADLLTKSTTAERTRQLRDLLGLKQRDPGDSRRKKEDICARGGDGD
>Copia-4_LBS#LTR/Copia 70-4917 67.9% sim to Copia-9_LBS, SW:2866, [Laccaria bicolor]
MTVGESSSSDPVSTPASSRPISLLSPLPNTPLASDTSHPSIPIQSVKESSWGDVAVLDKNMNNYAAWNRHVIRILQLSSG
LDQYLDGSLPAPDPHYEPRAHRHWKLNNAAIQAFIFLKCASSEHQFIENCTTAEDIWSILKKRHVHQGPMTQVTLIQEAL
SVRYSSSVPFAETTLVLRNLNRRIWDMGAPTSEGFLCILMLLVLSADDSLSPVRDSIVTGLSSSTADRAYTSAHIVDRLD
YEQQARSMTIARTVSVPAEAHVARGSCSSDSKQTICSNCKKPRHTSEFCIQPGGGMAGKTIAEAQAAREAKRGKKSKEKM
SKPAGSIIQSGNQAYIVDADGKAHEIISSSLSSAAMSTVPDSAHFLHTDDINLIDPLVLDSMCAADIAEYAHIAELSWLA
TQDSLHASVDWHERRRNTEDLGLAAVTAAPLPASSRRTVLSLDTSPFLLDSACTTHISPDRSDFMTLHPITDRTVTGVGG
SSINALGIGTIKLIIAKGSHILLENVLFIPASTVRLISIGCITESLQCSVTFDTTTVTLKNCSGSLFATGTRLLTRKLYS
LNCTRLSAEHAFVMADLDTWHRRMGHASNQSILDLATKQLAQGMLINLSRSPPKCDSCIHGKQGRTPVPKIRQGERSNRK
LGIIYVDLTGPEAVKSASGNQYVMNIVDDHSSHPWTFCLKLKSDVLPFLQSWARRAESESGERIGIICIDGGELKSDAMN
AWCDANGYTLQVTAPYTSAHNGRAEHMHLTVMNRMRAMRASTPSVPPNRWDEFAMTAGYLSARTPTRTLGKTPFEVWHGK
KPDLSHLCEIGSRAFALILHHNPKIYERSFECVLVGYSPHSKAYRLYHPSTHRLFESFHVKFIERKDDISHPLYPGCVID
LPVTDDPINITPPSSPPIPSPPSSSSSSGSSPKHTSVQDEEESIPSASNPVWQPGPTHEIEVPVPLLHNPANVVPVLADD
IVPVPADDTDIVPRRSGRPPAPSTKAAENLGIKQIPHVAQAVLESREAGHRLKEQWAQAKFEQRQQVLDLRASTTNVDVV
QTPSLPTNAVPDDTLPPLVTLDSEADFVAFCEAYAAELAFPLINPRDPDEPTFREAMKSPDSAKWTLGIQDELKSLKDMG
VYKLVPRSDVPAGRKILRGKWVLILKRDELGDPVRHKARFVVLGYEQIFGQDYGDTTSPTARMESVRLLLNIAAAKDWDI
QQIDVKTAFLYGLLPADEAQYLEQPESFEEPGKEDWVWCLQRGLYGMKQSGRIWNKTMHKAMLNWGFTRLHADPCVYYRV
TSLGTVLTAVHVDDFLITASSPEASRSFKEELKSLWTISDLGEARFCVGIAICRDRAKRLVSISQTALIDRIIEQFGQTD
ADPISTPMDPSVAKSLTRPLPSDPPLSPGNAYDLTRIPYRSLVGSLMYLAVGTRPDISFAVAHLCQFLDCYRRPHWNAAI
RVVRYLKGTRLLTLTLGGNSELDLVGFSDSSHADCPDTARSTMGYCFSVGGTVFTWSSCQQKTVSNSSTEAEYIALSEAS
REALWLRQFLREVHLLKPGPTVLLCDNNGAKALSSDPTHHSRSKHIDVRHHFVRERVDDGSLTIWRVPGFDNVADIFTKA
LPRPDFTHLRPFLGLR
>Copia-4_PGr#LTR/Copia 48-4114 via tfasty with TTO1_NT, 59.7% SW:1319, 1 frameshift. [Puccinia graminis f. sp. tritici crl 75-36-700-3]
QSTPRILLNNSNYHVWSTLMESELDNIGCLEVTSDSADERSPEKEKKGYHLIVRYLSEEVLGYLANVIKTEDKGTGSVAW
NLLKNKFAGNTTHAKSVAFNNLNQIKFADATQFVNDVRGSISRLRAAGLNMDSECLSLTILQKLPRAYESLVRIISQMEP
IPSEEDVLKQIEKDQIQFNTREKDVEALYTKKPYKKNYSKNDKKQRPKCYKCNKLGHIAKDCWSVQNPKTLCYKKQNKTF
IARSNEDDYEEEEVTSLMAKKANFTENVDMDGYIQDDVFKRVPLPIEEEEPEEATGAQSNSGYEADVSKTINSNSVDNSV
QIINYGLLSHTDRGSSGILVDSGCTDHMFNQRKFFSNFIVCNGNVNIGEKGRSIKIEGKGNVKLISSNNKIIELKTVYFV
PDLPYNLLSLTSLWNHGIQIENSGKMFHMKKKDKIIFDGEVKSRLLHANLKPIEASVYSSIMHRRSGHKVTDENCESCKF
GRMTRNKFSKSRNRTVKVGEEYSIDLAGPFNPASLGGAKYFINLVDTASNFTWVKPIRNKDDTAEETMLLFKKWHRMGIL
KNLKRIITDGGGEFIGEEFQDVLRDFGITHIKTTPHTPQNNGIVERMNRTLMERVRTIMIDASLPKFLWAEILSTVSYLH
NVVETKRGCPFEMFMKEIPNNKKLRTIGCLVYYNISHYGKIGKLESRSSKGIMIGYDQLSTCYRIYDPEKRKVIRTRDVR
FQEDVFPLKKVIEDVWENPILPVKDNTTEIIQTKEKSQVKEVIKPVVPVRRSERIKNLEDKYGKWRANCAYIEDLEELVE
EEQQAMAYQASFEMENRVVPNSYKQAMKLPDKQKWKTAIFEELDSLENNQVFEIIERSDVKKEKTLVGSRWVLTQKFNEL
GELKRYKARCVAQGFKQKEGIDYQETFSPTGRLSTLRYLMALAVETGEEIRQADFVTAYLNATLEEDETVYMHIPEGFKE
WLIETKPETLRKQNIDNFLRGGNNDYIMKLKKSLYGLKQSARSWYNTMSSWLENKGFQISEADPCLFTKNGTILFVWVDD
IIVIGPEKEQLLKMIKQDFKIKDLGKAQHVLGMKITHKSDGSIRVDQEHYVKALLTKYNMEDAKTFGTPMQSNIKLEKST
EEEIIDFKKTEHDYRAAIGCLNYLSQCTRPDITYTVGILSQFLEKPGIKHWQAFKRCLRYLKGTQSLGLEYSKGEDFNLV
GYSDSSWAENDLKQSTSGFTYFLGKNLISWRSKKISAISLSSTESEYRAYLSAAQESKWIRKMLEDTYKIQTYSILFSDN
QGAIKLASNPVFHSRTKHIDVHYNYIREAVKYKEIVLEYIPTADMTADIMTKALDRVKHIKFSISLSLSPPTGLRG
>Copia-4_MVPL#LTR/Copia 5-4162 via tfasty with Copia1_Dmoj, 59.9% SW:1309, 2 frameshifts and 4 stopcodons. [Microbotryum violaceum]
MSSTTTTNVSNEGDVKITKLGKDNYELWSIRVDAFLEGRGYSSVLQHGADRPSSMDVQAWKTLHGIDPSLEEGKVPTLIT
KWDRSARAIIISCLDDSNLKMVKSKSLSAKNIWEKLKQHHEGNADPFKIRTLLYEISNALYDEDTNLGEFLQGITDKVDQ
LEDLGQKFKDEAIVAFMLQALPPSYEMLKQAIKLSDKCSVDYAVNRLTDEYSERKLTGKYNKLLKNAGALAVREGTQVKR
DPNCICRGCKGTGHYQIDPECPKYDPNAKRGRNKNHSNKKKKQHKHSKGSADSEESASFALVFKSRGEPFASHQRRExGS
QNDQSEIWILDTGASQHYVGNASLLTDRQHGSLNVQTASGQVVHCDTYGTVRFKLRSGASLSLSNVYHLPGAPVNLVTTR
ALYRSEASCGWEDGRDVMTIKIKGLTVAKTLNGTGYTLDFTRIVEDQAHVATRATVGAPLMEWHRRYGHIAVSSLKEIVK
SGAVDGLVLTDEKVHDCEPCISSKCRVSKFSESVTHVTDVLQRVFMDIGLVAEDQVDFQGRKAYLAIVDQYSTAKWTFPL
KTKSAEEVTRVWIAFRQGVEKMTGRKIKRVRTDNGNEFTNKLIGTDSQSQGILHETSAPYTPQQNxTVEPFNGSLMAIVR
AVLAASKLSWKYWSYAMEYATFVANRVLHSKLDGKTAYEVFYGKKPKVSHFRPFGSTVFAQVPKSKRSKLEPTSVRGTFI
GYDNEYNCRVLFDSDSEHKVVITRDIAVLNLQPEEVRAPEVTTLLEGPDEDVGPVLEGNDAGDELQDEVAVEQIAPARPN
RPRWEYRDPAVRGRNPGRFEEIDAGTEIHQRTRGQRCIAEQQGLFVTDIPELDPEPPIMSGYVMISTDRPAVPSSYKEAM
NNVEADKWKEAIQDELNAMDRHQVLADSDLPHGARALGSKWVFARKENAQGEVIRYKARLVAQGFAQRSGIDYDETSAPV
ARSTTILFLIAIAASQGLCLEQFDYDSAFLNGTMTEMVYMKYPKGWDRPQLGQVLRLVKSMYGTKQAPRExNSAVNKLMV
ACGYLQSDADSCLYVKRVEETFIYITLYVDDGLAASNDQTFLNSEIxAFNKVYQLKRLGPVKVFLGLEFLRSSKFIQSKY
IRSLVATYGGDHGSKHPAKVPMKPRLNMEHSAELFDDIALYQSAVGALQYAAHRARPDIVTSVRAAASKVSAPTQADWIA
VKRIIRYLQGTIDWGLKYNLEGSTVFKLYSDASWGDDMLTGKSIGAFVSIMAGAAISWQSKQQSMVATSTTEAEILAASA
TAKEAMWLRRLAADLKIQQPGSTLLWEDNQAVIAIAQNPAHHGRTKHYSVHHFYIRERVTTGDIDIKYCKTGAMTADLLT
KPLARNLFELHRDGLGMVSLGALTSG
>Copia-3_PTri#LTR/Copia 314-4858 via tfasty with Copia34-PTR, 86.9% SW:5633, 7 stopcodons. [Populus trichocarpa]
MSTDETSLTIDTGKEIVVPTTSADLSKAGISNPYFTHHADHPGLVLVSKPLNGDNYSTWKRAMNLALNSKNKLGFVNDSI
KAPSEETDPEGYATWSRCNDMVHSWIVNALSPEISNSVIYYSTTHEVWEDLRERFSQGNAPRIFEIQRDIAYLRQEQLSV
STYYTKLKGLWDELASYNNAIHGAQQDQQKLMQFLMGLNDSYSAIRGQILLMNPLSSVWQTYSSVSQEEKQHLLSSTYAA
IDSSSSAAMVVRSKPNPVRHERSNHPYGSQESRSQERQPENFRQDRRRHGTGTGRGRPNCSHCGEMGHWIQTCYELNGYP
VGHPKAKFNSGSRGFNNRTKPAVNNVAEWSSKIDGNQIVGISEDELKQLLSLVSKSDDSISQANAVIKPGLSNIASRNxI
IDSGATDHISSSSKLFFHKNKSCSLPPVMLPSxDKANIVAKGSLPLNSVYYxHNVLCVPTFKVDLISVSRLTRGLNYSIT
FFSYWCILQDLATRRMIGLGKQRDGLYYLAALATKNSVNTSSSPTKQPTCNLTISSTDLWHHRLGHASSSRLSYIAKKFL
NFSVQSNNTCPVCPLAKHIRLPFSPSTISSLKPFEIIHCDIWGRYRHPSLTGAHYFLTIVDDFTRFTWIFLMRHKDEAQS
LLKKFFSFVQTQFESHIKTFRSDNSGEFTSLRSFFQDHGVVFQHSCVYTPQQNRVVERKHRHILQVARALKFQAQLPTLF
WGECALTAVHIINRLPSPVLSLKTLFELLYSKRPSFSHLRVFGCLAYATNVRVSHKFDHHSIPSIFIGYPVGRKAYKLFD
LSSNKIFTSRDVKFHETSFPYASVKPISPSPTVPGPIPLLARDIPWPNSFSPTPNASLSNTVTPPALPNSLPASPSSPFP
KTPHTSPSPPSSPPPLSPNQSFLSSELPSLSSSSLAPSSEPSSIPPSHSPIPVPDPIPLRRSSRQTGPPIKLKDFVCNNV
YSTQSTSLSLGLTKGTRHPLAKHLSYHIYMPQYKSFVAQLGIITEPRSYSEAIVHPEWQKAMNSELQALQANGTWTLTPL
PAGHTPIGCRxVYKVKLRSDGSVERYKARLVTKGFTQLEGINYQDTFSPTAKIISVCCLLALAAARGWSLHQMNVNNAFL
HGDLVEEIYMSLLPGHQRQGENNLVYRLHKSLYGLKQASRQWFAKFSEAIYSAGFVQSxADYSLFTKTQGKLFTALLIYV
DDILITGNDPASIAATKTFLHSCFNLKDLGNLKYFLGIEVxASKKGIFISQQKYALEIIEDVGLLGAAPINTPMERGLKL
SDNNDLLKEPSTYRRLVGRLIYLIVSRPDITYAVHLLSRFMHQPRKLHMEAALRVVQYLKGAPGQGLFFSSNSDFRLRAY
CDSDWAGCPLTRRSTTGYCVFLGPSLISWRSKxQKTVSLSSAEAEYRAMTEACCELTWLRYLLRDLGLTHHESAMLFCDN
KTVLHIAANPVFHERTRHIEMDCHYIRDKIQDGSVITRYVSSAHQLTDILTKPLGKENFVPIIRKLGVQDIHSPT
>Copia-3_EPa#LTR/Copia 63-4010 via tfasty with ATCopia13, 76.8% SW:4404, 2 stopcodons. [Eutrema parvulum]
MTSLKVFVMSGSAAMTKQGDAKVDEVSSVSPYSLYAFDNPGAVITSVRLNGENYNEWSSEMLNSLQAKRKMGFINGSLKK
PAEESADFENWLTVNSMTIxKNVSRWDNQPSSQSGKLENRTDNNNTILRSRALCSHCGRTRHEKRDCWQIFGFPEWFTER
NNGRGQNGSARGRGGRGSSGRGRGQASAAHATTSNSSSFPKLSTEQWNILTQMIQEKSGSDVSNKLSGKNKLGDVILDTG
ASHHMTGSLSLLTNVERISPCSVAFADGGKTFAMSMGSFPLSDKITLSRVLYVPDLNCTLVSVAKLLKQSNCFAMFTDTI
CVLQDRFSGILIGTGEERDGVYYFTDIVSAKSHWVSSTSDQDLWHRRLGHPSFSIFSDLLFLSIKPASSSQCDTCFRAKQ
TREVFYDSLNKTSECFALIHVDVWGLYRVPSSCGAVYFLTIVDDFSRAVWTYLLLEKSEVKDVLKKFIAYTERQFGKIVK
TIRSDNGTEFMVLSAYFKELGIIHQTSCVATPQQNGRVERKHRHILNVSCALMFQASLPIKFWGEAVLTAAYLINRTSTS
LHQGRSPYEILHGVPPDYKQLRVFGSACYTHRLTRDKDKFGQRSRLCVFDGYPFGKKGWKVYNIERNEFLVSRDVIFREE
VFPFAEPMTDQRVQESNRIEDGDDGWLVTPVERGSTDAPASAAATSESHSPPSTEFGNSPSPARSLVAETEETKSPITVS
SAPVLDSPAELGKGHRNKTKLAALNDYILYNEISSHSTHHALPASESPSPSNAPSKSLYPLSDFVTDDQFSAGHRAYLAA
ITKETxPKHFQEAVRIKVWNDAMIKEVVALENKHTWDIDTLPPGKVAIGSQWVFKTKYNADGTVKRYKARLVIQGNNQIE
DEDYGETFAPVVKMTTIGTLLRLVTANNWEVYQMDVENAFLHGDLEEEVYMKLPPGFRHTHPDKVCRLRKSLYGLKQAPR
CWFKKLSDALLKFGFVLSYEDYSLFSYSCKSIELRVLIYVDDLIICGNNPHMLKKFKEYLGRCFAMKDLGKLKFFLGIEV
SRGPEGFFFSQRKYALEIIMETGNLGCKPASTPLEQNHELAMVKGPLLDNPKKYRRLVGRLIYLLNTRPELCYAVHIVSQ
FMQSPQEAHWLAALRVVRFLKGSPGQGILLRSDSDLTLSIYCDSDWSACPLTRRSLSAFVVMLGGSPIAWKTKKQDTVSH
SSVEAEYRSMSAALREIKWIRKLLIELGVDQSAPLRFFCDSKAALHIAANPVFHERTKHIENDCYSVRDAVRDGIIVTQH
IRTGSQIADILTKALGRVPFQNLAFKLGILDLHAPT
>Copia-3_DWil#LTR/Copia 132-4019  [Drosophila willistoni]
MSNLYHIEKLDEKNYDSWNIQMRSVLVHSDLWDVTAGNLPTVEGVDLGGLDRKALASITLSVKPSQLAYIKNCLTAFEAW
TRLRDVHQPKGPVRKVSLYNKLLSLRMTDGQDMPSYINGFSDVLDQLAGAGVQINEELRTIILLSSLPPVYENFVVAIET
RDDLPSFEILCIKLKEEAERKRLTVTKENGQEAFVAMQNRNRNQNARTQRNRSQITCYKCGRQGHVKAQCGKERVDKKEK
EYKYTEKMENKQCSLINALEAENMKREKWCLDSGATSHMCCDKSMFSDFSVHDEKISLADAGYLRAEGKGKVTIRTGICK
LTMNNVLYVPGLAGNFMSVARVIEYNSVVHFEKHMAKIIQNGECILKAKKIGNLFVFEAESENLFAAVGEDVSLWHKRFG
HLNYKSLTQIASKGLVRGLSVTNFAPNTPCKTCMVSKIHVQPFPKMTESRSSELLQLVHSDVCGPFGTKSLGGSRYFLTF
IDDKSRRIFVYFLKGKDEVFGKFLEFKSLVERQTGKKLKCIRSDNGREYVNNAFDDYLKKNGILRQLTIAYTPQQNGVAE
RANRTLVEMSRCLLAQSGLCEALWAEAIFTAVYLRNRSPTSALTNQTPMEAWTGKKPCINHLKVFGSVAVALSKGHQESK
FRPKGKEYRMVGYSREAKGYRLYDGETRKVVERRDVLFDERDPIEQTNCTTVMFDLPGRYRQNEIADANPEINESESDAS
EGQSAESDADEESFHSAPEEKLAQDESEMRVGPGRPRVIRTGKPGRPRKQYNILASIVAGEVPTPSTYEDAISGPYASQW
QEAMDKEFGALVKNQTWELIDLTNKQRTIGCKWVFSLKKNAQGDIERFKARLVAKGCSQQFGVNYTDTYAPVCRLESVRF
VLAVAAELDLYLHQMDVCTAYLNSDLEDTVYMRQPMGYTDKNRPKAALHLKKAIYGLKQSGRAWNSKLDAVLRDLGFKPC
SSEPCLYQNHGEEDLTLILVYVDDLLIACRSKQKMDAIKAAISNAFDCTDKGATELFLGMEIHRDGELGPITLGHSQYIN
DMLVRYGIENCRPAVTPLDAGHQVACDNKQCKRVDIGSYQTQIGELMWLALTTRPDILHSVAKLAQRNQDPHSEHEAGVK
HILRYLASTMDKKLRYKRTGQAFSGYVDADWGGDKTDRKSYTGYVFFLAGGPISWKSEKQRSVALSSTEAEYIALSTACK
EAIVLRRLIIELGCGNAETPTVVYGDNLSAQQLAKNPVHHSRTKHIDIRYHFVRQTVSEGFVELKYVPTDLMIADILTKN
LPKKKHNDFVNMLNLS
>Copia-3_PIT#LTR/Copia 82-4990 via tfasty with Copia-112_AA, 57.5% SW:1138, 1 frameshift. [Phytophthora infestans]
MSSTSLPSSSSTTGTVVPSIATATSLMASAEATTTQIPVASATSTQVVSCVTSGVSGVVSTATAGAVTTGGMSGGVASGV
ASVPGVSGGGYNVGGFNFGGITPGQGGFGLPRVGFGALPVKMDNVPKMKGSFDLYAAHLRALLTRLNCWSVVDGSFDPNI
PVEQINFAARNNIAREATLSDVPAQDAEMICQEETAQAMWNSFVDKQTKRNYIFARAEFYSHVYTADKGMDQWLREMESM
RRQLLHYGRRVTDEDYAETLLGHVARTHRDVVRQFSKHYVVRGDGASVRPVPTATQVMNALRAESALDEKIGSEEQLPAG
IAACGRESTQHKEKKQNSGKGKRKRTFRGKKQKDAKQVGKKTGKQDCFHCGEVGHLRPNCPNRDEDSSDDRAAGISSEGS
ERKRWQNRSGGDCKSKKKEKKISAVGCISRESLMVASVSNAASDDIEWALDSASDVHVCNQLELLSQLQQDSKHVFQGYD
GNITDNERIGNVNIKVMNNNQPHQEVSLQLENVLLKSSAPDNLLSLDALENAGWSLKTARRDSQPDKRSSTATVAKSRGR
YRLKTTASAVYHVPAVNQRDRREAATSLIRWHLRFAHPNLPALQQMAKQQVTTGMEENLNDDAEIPCWSCKSAKMTRMSY
KKTLTRRATKPYQKLMSDMCYVGIATYDGYMHFQLVQDEATRYLWGFLLKRKEDATEAVIAHVNWLLSQRHKIQVFNSDQ
GRELLNKKLRLFLHSHGVEYTWTNAYSPEENGLVERMNGVIMARVRCLLTTADMPYLLWGEAFSFAIEVGNICALSALNG
EKPYFRRFEERPDVSALRTWGCLTYVFTPKVLRMSKLENPGKPALLMGYAKHSESYRVLSLVTGNIQEVRSVDFHEDWTV
ERSYVEGLLNNRYNKGHQVLPAIIPFVRLPVLSSTTKDSSIHDEVRTKRRHCDGGIGDTNSHYTEVRSSPACPGAPDRLP
LIEAEMFPVATGDQLLQREANPSRVKWTDSEGQEGDTDMNLPNSDSVAEPPVASHTSPSVGKERVVTDADVEYDDMEDKE
PIAIGDPSSPVDKVDDAIRDSESEDDVMMNDTTESFRRSHRTRWPSSRYKDFEVELPLSLMIEAVNSIMEPQTLEEALSA
PDADQWIQALKKEYGDLMRNNTWELVERPKGKKVLTSRWVFVRKRDAHGNYVRHRARITIEGCQQRYGVSFWETYSPVVA
QEAVKFILLLALHLGLSCRHVDFVTAFLNGPIGDVDIYMEMPEYFDDGSDRVCKLLRSLFGLKQAPMIWYQTLDKYLRSL
GFRRSKMDGGIYVRSVGGSPIFVSVYIDDLIIAGTEENIELVLRELRAKFKIKDLGPVKDLLHMEISYVPGDVLWMSQSG
YIDKVLKRFGMEDCRPVATPQATGNLPDTVDDDEPGVNDPSIPYRELVGSLQYLVQGTRPELANAVRTLGKYLKRYTKEH
FVMAKRVLRYLRGTRDYGLLWKKPANSDLHFTAYADADLGNEKDDRRSITGFVLQMNGCTYAYKSHKQSITQDDTCSAEL
IAAAECFVMIVWTHNLCEELKLCRRRPTVLFQDNQSTIKVIKSTKGNYKVKGVDLKYHKVKDLYERGDFDVRYCPTAEML
ADIFTKPLGSTQFSKLRKLLNVVPLPLMESDATKDD
>Copia-3_PSo#LTR/Copia 5-3971 via tfasty with Copia-4_PR, 80.3% SW:3650, 3 frameshifts and 3 stopcodons. [Phytophthora sojae]
MSSNTTTAFTTKLRKFDGSGYRVWARQLQLYLEVKDVWGAVLKPAPTSLQLANEEPGQADRPLQQRERPLHQLELQQKLA
MTIILSALTDDQAALVADLTHPQEMLQALQRTHRHVCDTTVGALKRQYMSLYIDAGGDMLEHIRQTRLMLAELDCYKVSL
SDAEKKSNFLQSLGPDWNGYIGALEACGSMEELLIKAAAEARRRSTQSQRSKHGGSQAVSSGNAFAAFAASSHGKRGVKK
GKCYNCGKRGHFENESKSKKQFGGAFGNAAAREDSDDEAEAGFVFQVSTQAAEADWIIDSGASSHMTGTSGLLLNLHEMT
SSVVVTTASGTTLTTIHSGKAHLPLITGGFCTLDSVLYVPGLQRNLVSLSKVGAAGLTATFDHALCVISSGGAKLVATRR
SSGLYVVSTPNAGNCAEADYASGGGSDDLAIWHARLGHLNARDLKTLLKAGGIATTTTQLRPYEGCAAGKLASRPFPAKK
PRDLKRGQVLISIDYVGPMETTSRDGFTGMVSMMIEPYHLAAVFPVKDKSSATQLRALRERIANLKVAVxEAQCVLKSDN
AAEYIGGEIAEFSNENMIAQEFSTPYSPQQNGKVERSNRVVVEMARSMLQAAGMSKRFWSDAVKTAAYIRNRCPSRVLAG
KTPIEVLTGHAPVLSKMRVFGCDAEVLLPKSQRQKLDAKTAKGVFIGYEKSGGYRLVPSGHGGSGSVVASLTAAFFESSI
REExTITLDGDLPAPTQQEVSSDQVPTGLDAIQEDIAMESGGSSTSEQSRQSLADPRVEKQVVRRSTRIKKKSVRRLEFE
ESHNTQELALVSELQDPLTLQEAMSRPDAEQWRQAINEELESLRWNGTYEEVFRSGNVRPVQTKWVFHRKTLADGSLDKY
KARPVAKGFTQQFGVDYTESFSPVARHDSIRAILALAVQLNWEHLQLDVQTAFLNSDLSEAIYVTPPTNESEDKVWRLRK
ALYGLKQASRAWFETVTKFLCDAGFVQCQSDTCVLVKCTTDGIVVVLLYVDFSNAASELASFQAKITRRFAINxCTASSS
FVGMELSWSRTGDMLTISQQKYATAVVKRFMGRDDKPQPHTPMECNFQRQVIDDSELIDETFRPAVGSLLYASTVSHPGL
ATAVRLVAQETEQPTRTVKDGIDRIVGYLKRTVDRGLVYRQSNKRDLQLEVYCDAAFACEKERKSSTGFVVFLNGCCIAW
GSKKQPIVTLSTTESEYVAVAHGIKECIGLKQLLFELGFDVGKIIVHEDNQAAQHVAEGKGVSQRSRNIDLRYHWVREQV
QKDIVQISYCATAVMVADLFTKPLPQDKFNLFVTRLGLCRVG
>Copia-3_PPa#LTR/Copia 633-5144 [Physcomitrella patens]
MSASTSSTASTMVPTITSASQHFQALLFPPLTVDGNNYLLWAKMAKANLFAEQLSDAIMFEESPTTSISIPPAIRWKALL
LLRRHLVPALQHQYLEMEDPAELWKNLKSRFDHQKTIFLPRARHNWTHLRVLDFPNLNAFNSEMYSIVSQLRLCGQSISE
EEMIEKTLSTFPPVSAVLAQQYRNMKFQSHSDLMSYLLLAEKQNELLLRNAEARPIGTTVPESHALNISKSKKKLYKHGK
RAHKYQGSHSQDHFYPYGKNKRSTINYSRKQKSEMRSCHKCGMIGHLAHACRTSEYFIKIFQENKKLRAEAREVHTMDAS
MDSIGVDDLEAYMNDRTSNDESNDALIDSATTHTILRDRRFFIEKSSTWQTKNMMTMAGANAFCFQEGTAMVKLPAGSII
KCKHAMFAPSAPRSLISYRDVRINGYHLSTATLNRKEVLVLAKNHKVVEKAFATENGLYRIVIRPPIIFNFASSISESRV
SLWHGRLGHPGSTLFRKIIPCITGHNLKPADVDSMELCRACVQGKMITRPSIWKLPQELPPMLERLHGDICGPINPISGP
FRYFLVLVDASGKQSHVSLLSTRNMVFANLISMLIRFRAHFPDYPIKTLRMDNAKEFASKSFEDYCTATGIELTYCVPYE
HAQNGLAESFIKRIQLITRPLLLHANLPASMWGHAVLHAAALIRLRPSSLEIVSPHELISGRVPNVSHLRVFGCRAWIPV
PEPQRRTIGAHRQEGIYVGFDSPSIIRIVDPSTGTLLRARLQNCRFEETVFPSLQGGVSNQQRNKVLIFEAPETFTMNPD
PRTSLAETEVAKILHLKRIADETPDGFNDAPRITRVPINEAQNAPAQIAVPLTTIPQVITTTTKRTRGPDKQPRKKKAIK
LTNPGIISQEIATHLAGLPIHDDISMHNVPSIPMKNNLGIGRNKNKLSKELSILYCATDDIWDRPSITVDESFAYMIIEA
LSCEEDDPEPQTIEEAMRRSDWSKWKTAIEEEYASLRKRKVFGPIVDTLTSRPVGYKMVLICKRDAQGQITRYKARLVAQ
GFTQRFGIDYESTYSPVMDSITFRYIIGMTVHATLEMHLMDVVTAYLYGSLDANIYMKVPPGLETGTPNQPAPGKYRGIK
LCKALYGLKQSGRMWYQRLRDYLITNNFISDPLIPCLFIKRDKTGFVIIAVYVDDLNLVGTTSACVTATNLLIREFEMKM
LGKITFCIGLQIMHLTDGSIFLYQLTYIRRILQRFNMIDAYPLSTPMVGRGRDGHDPYRPCEEEEEILGDQYPYLAAVGA
LLYLATSTRPDIAFAVSVLARHSARPTLRHWNGIKYLLRYLKGTEDLGLYYTKSADPKLVGYCDAGYKSDIATAKSQTGY
VFLRHGAAISWKSVKQTITATSSNHAEIIALHEASRECIWLRSIDKFIQTTCGFSYDDSPTILHEDNSACIAQMQVGFIK
GDRTKHIDPKYFSYTHDLITDQALIIKKIESTNNLADLFTKALPLSNHRRLTYGIGMRRLAFLE
>Copia-4_TA#LTR/Copia 79-4593 via tfasty with Retrofit7, 78.6% SW:4275, 4 stopcodons. [Triticum aestivum]
MSSSSTISLNLGSLPSEKLTKTNFILWKAQVMPGLRGAQVTGLLDGSDIALPKTVQQQADKTTAATPNPLYAQWISKDQQ
VLSHLLNSLSMEILVQVASKETTFDLWTAITTLFASQSQSRITNLRIAITNTTKGSMSSSAYISRMKNLGDELAAAGRPV
SDPEMVDYVLAGLDRDYVPVVAAIGAVKNQISVDDLFAQIAAFDQRVEMLGDGHDTGFKTSANLAYRGRGRGYNRGRGRN
NSRGRGRGRRPSPTPSGGNGGGGGGRGRPQQQRxQQVRDYPECQICYKHHPGGARDCWHRYDDEDEHEEKGANMVTDSYG
VDTNWYADTGATNHITGELEKLTTRDKYRGHDQVHTASGSGMKITHVGSSVVKTPMKNLHLKRVLYVPTTSKNLLSVHRF
TLDNRVLIEFYPYFFLVKDLDTRRVLLRGKCVGGLYPLISSSSPSNKQAFVAVKPSSAKWHSRLGHPSSAIVKIVLSKNK
LPHSHESSIESVCDPCQxAKSHQLSYPISFNVSTAPLQLVFSDVWGPAPTSVGRHSYYVSFIDDYSKFTWIYLLKKRSEV
FQVFKNFQNLVERKLNTKIIAMQTDWGGEYKKLNLFFQVLGISHHVSCPHAHQQNGSAERKHRHVVEVGLALLANASMPL
KFWDEAFLTATYLINLLPSKVIKFETPITRLFGTTPDYKSLRVFGCACWPNLCPYNTRKLAFRSKKCVFLGYSPIHKGVK
CLDVSTGRVYISRDVVFDESIYPFESLHPNAGALLKKEILLLPSHLQNIDHGADNCTNPTDDYTSGTVPLHMQDHAAEIG
AEIGAANDQNFVENDLVLHVPEEDGIGAEHEVDPASPGTPVCQAASDRARGSAPDRTPSRSPRASPRQSGGDASPQPDET
PRPAPRPTRGPDGSTATGGSGLGSHAHVPAGSARSSVAAASSGLGFAVESGSESPGSSTANPTASTFVPQTATRRNQPQQ
TVSRVTTRLQKGILNPKVRTDGTIRYGMLCITGEPTRLEDALGDARWKIAMDEEYSALMRNKTWHLVPEKRGKNIIDCKW
VYRIKKRADGTIDRYKARLVAKGFKQRYGLDYEDTFSHVVKAATIRLVLAIAVSRGWSLRQLDVQNAFLHGVLEEEVYMR
QPPGYENKKTPHYVCKLDKALYGLKQAPRAWYSRLSSQLRHLGFVASKADTSLFIYNKANTTIFVLIYVDDIIVVSSSQG
ATNALLHDLSSEFALKDLGDLHFFLGIEVKKIxDGIILNQEKYATELLARMGMKDCKPSPTPLSSSEKLSAFEGEPLKEE
ESTKYRSAVGALQYLTLTRPDISFAANKVCQYLHAPTTVHWTAVKRIVRYIKHTVNLGLQFRHSTSTLVSAFSDADWAGC
SDDRRSTGGFAIFFGANLISWSARKQATVSRSSTEAEYKSLANATAEILWVESLLNELGIKQHRVSCLWCDNLGATYLSA
NPVFHGRTKHIEIDFHFVRERVAEKLDIWFIPSRDQVADGFAKALPVKLFEEFKKNLNVGxLRLR
>Copia-6_DWil#LTR/Copia 265-4233 via tfasty with Copia1_DM, 2 stopcodons. [Drosophila willistoni]
MSVASVRIEPLGKENFDTWKIQMEALLIKNDTWKYVNNTCVKTEQNAAQWVKEDAKAKSDLILAMATTELKQIKNCETSN
EVWKKLHSIYQSTGPARKATLLKSLILLKLGPGADMRDHVDKFFDIVDKINETEVININDLISILLLYSISEEYETFRIA
IESQDNLITPEALKVKLLDEYEARNRNKGESSPGALMINKRFNNGAPGSSKAGGFKYKCYNCGKVGHKAAKCPKKFPKNS
GENSESYSSMYIQEANLTRTSLKGWCLDPGATSHMCSEKERFNKTYAEKSQELKLANGESTAINGIGSVTFKPNCKFSAN
LLNTLYVPDIRENLLSIAKICDHGFNVLFKKNFAEIIQVSNGQVVFVAQRKHDLYHVEEMGEESHLAVGNKTSIREWHER
FGHLNEKDLKDVIQKGRVHGACVNINESLPICEACIKGKQSRKPFPASDSKSKELLELIHSDVCGPMRVSSHGGSRYFVT
FIDDFSKWCELYTIKSKSEVFNKFKEFKVYVELKTGKKIKRFRSDNGTEYTNNEFNKYLKAAGIKHEHSVEYTPQQNGTA
ERKNRTLVEMARCMMIQAVLPPSYWADAINTANYLRNRCPSKSLRGEVPFTLWNHRIASIKHLRTFGQIVHSLDKRAKSK
FSPRSKRCIFIGYCNDAKAYRLYDPEAKMVLRSRDVIFTNIFGNDHEFEEFSELSAVNAEYQEEHSQEDDFQEERVVPEE
NTPEENADIEENIQEEPVLQRRGPGRPRKKHTGKPGRPKLIYNEVQIQSTIGKEPELESDEEDEYYEASSLISIGDESST
RAALSGPNAIEWKNALISEYKALQKNKTWETVKRERNQKVIETKWVLRTKYKPNGEVDSRKARLVAKGFTQREGIDYNET
YSPVARIGSIRTLIAIAVELDLDLHQFDFNSAYLNGDIEEELYIKVPPEFTEILTEKEKQRYTDDKVCKLKKALYGLKQS
GRQWYKKLDYKLKQMNLKPLAADPCVYMKKQGNGIIIVSLYVDDLIVATNNNKLLTQLKAELTRNFEMKDLGKLSYCLGI
EFLQNKNKGECSLGQSRYVKDILxKFNMEDCKPVSTPMNASEKISNQMCPKTKPDLDEVSGVPYQSLIGALMWLAVSTRP
DIAHTVSLLSQYNNCYGKQHWVAAKRVLRYLKGNQDHGLIYRKTGKDLVGYADADWAANIDDRRSFTGFAFKMANAPISW
ESRKQRTVALSSTEAEYMALSETSKEAVHLRSFLQEIFGSLRSTIIYNDNxGAGQLTRNPLFHKRTKHVDIRHHFIRELV
DKGDLRIDYISTSEMPADVLTKGLGTAKHESCVTLLGVQKIEK
>Copia-6_BRa#LTR/Copia 74-4489  [Brassica rapa]
MSEEKAIVTGVSGDKKVCSPYSLFSSDNPGALITSVQLKGENYNEWATEMMNALQAKRKLGFVDGSLKKPPEGHADLESW
LSVNSMIVGWLRTSIEPRVRSTVTFITDAYKLWENLKERFSVGNKVRIHQLMTKLASCRQDGQPVIDYYGRLAKMWEELQ
TYRPSPACTCDAAAAYEKEREDERVHQFVMGLDESRFGHVVTAIIEADVLPDLGKVYNKVIREEDRLNSAKSREQQQEAV
GFVTRREGSGGDAGRSGSRDEYTSQSSQNRGKDRNCSNCGRSGHDKSNCWQLIGYPEWFTERGGRGTRGVSRGGGRGGSS
RGRSQANVAYATNANPGGERSASDLTPEQWRAITEILNDKSSTSDKMSGKNMGDVILDTGASHHMTGDISLLVNLRDTSP
CKIGFADGSNTISVKIGVLPLSDRIALYDVLYVPDLNCSLISVSKLLKHSNCFAFFTDTLCILQDRCSRTLIGAGEERDG
IYYFTDVKAARVNKAVKVEDAALWHQRLGHPAFSVLSSLSMLSGVGVSESSIACEVCFQAKQTREQFPTSSNKSTECFEL
IHLDVWGPYRVKSSIGASYFLTVLDDYSRTVWTFLLLEKSEVKRIVQEFVAYAETQFGKLIKTIRSDNGTEFTCLSPFFK
TKGIIHQTSCVGTPQQNGRVERKHRHLLNVARALLFQASMPVKFWGEAVLTAAHVINLTPTRVLNGKSPSELLFGAAPSY
SELRVFGSLCFAHKQVRDKNKFTSRSRRSLFVGYPYGKKGWKLYDLDTNEFFVSRDVTFREDEFPFNTITSEKCVRPEVV
EFDESELQMNDGSDKEDMRSSEVVAEDRGSSVVVTGPVDVLADPAIMKIGPEIGPTKEVVSDTSLVSKEVVSSETVVSET
VTEQIEELGRGQRVKIPSVKLADYVTYKTVCGENSIPHVLSYSVFFDTVTGNTLYHLTEYISDERFSAEHKAFLASVCGE
SEPKNFKEAMLDERWNKSVYKEITALEVANTWSVVDLPPGRVALGTMWVFKIKYNADGTVERLKSRLVVLGNRQKEGCDY
DETFAPVAKMTTIRSLLKIVAANNWEVHQMDVHNAFLHGDLREEVYIKLPQGIGNSDPRKVCRLHKSLYGLKQAPRCWFE
KLTTALTNAGFEQSYSDYSLFVYSRDEVEIRVLIYVDDLIVCGNNGEAIQRFKKYLGDRFRMKDLGKLKYFLGIEIARSK
EGFVLTQRKYALDIVKETGLLGSKPADTPMEQNHQLASDKSPFVSDPARYRRLVGRLIYLSNTRPDISYSVHILSQFMKK
PRERQFEAALRVVRFLKGSAGQGILLKSDSDLQLSIYCDADWAACPLTRRSLTAYVAMIGGSPVSWKTKKQNVVSHSSAE
AEYRAMSIATREVTWLRQLLTDLGFKPRTPARLFCDSKSALYIASNPVFHERTKHVEIDCHRVRDALKAGVITAAYIGTK
EMLADVLTKALGKFQFTKLMSKLGICNPHAPT
>Copia-6_GM#LTR/Copia 95-4147 via tfasty with Copia-2_CP, 86.7% SW:4699, 1 stopcodon. [Glycine max]
MSAESSNFVQPAIPKFDGHYDHWAMLMENFLRSKEYWHLVETGIPTVAEGIQSTEAQRKSIEDHKLKDLKAKNYLFQAID
RNIMETILDKGSSKSIWDSMKQKYQGTSRVKRAQLQALRKEFEVLQMKGGEKVEEYFARTLTIVNKMKIYGENITQVMIV
EKILRSMTSRFDYVVCSVEQSNNLDSLTVDELQSSLLVHEQRMNSHGSDTRDEQALKVSHEEQNGGRGRGRGFGRGRGRG
RGRQSPNKATVECFKCHKLGHFQYECPRWKESANYAEIYEEEEMLLMSLVEADNLQQEETWFLDSGCSNHMCGNREWFST
IDEAFRHSVKLGNDSKMEVLGKGNIRLQINGAIHVVTDVYYVPDLKNNLLSVGQLQERGLALLIQDGKCKLYHPRRGLIM
QTEMTANRMFVLLASVVLEETSTFLQLATEDSSQLWHRRFGHLSYKGLRTLQHKQMVKGLPFFKDSSKSCPGCFVGKQHR
DVIPKKSQWRASHKLQLVHADICGPITPNSNSNKRYFITFIDDFSIKVWIYFLVEKSEAFTTFKYYKSLVEKESGAFICC
LRTDRGGEFTSNEFNEFCKIHGISRQLTTSYTPQQNGVAECKNRTIMNMVRCMLCDKQVPKAFWPEAAKWTVHVLNRSPT
LTVKDKTPEEMWSGIKPKVDYFKVFGCLTHVHVPDQKRTKLDDKSLQCVLLGVSDESKAYRLFDPVARKIIVSRDVSFEE
DKGWNWGRTAEEVKHDVLIWEGSNDSEDASSENEEEAVVEGTETAGVTDQDAEATTSTSSDSSNEDASVHATAEGRSRRA
PNYLQDYEIGEGLSEDEDYFAMFISDDEDYFAMFTSHEDPSSFEEAERDEKWRKAMDLEIEAIKRNxTWQLTTLPKGAKK
IGVKWVFRTKLNENGEVDKLKARLVAKGYAQQQGIDYNEVFAPVARWDTIRMVLALAAQKGWNVYQLDVKSAFLHGELTE
DVYVEQPPGYVRKGEEEKVYKLKKALYGLKQAPRAWYSKIEAYFVKEGFERCDHEHTLFVKTGGGKRILIVSLYVDDLIF
TGNDACMFESFKKSMKIEFDMTDLGKMKYFLGVEIQQNSEGSYLSQKKYACELLEKFGLQNCNSVKNPIVPGFKLSKKGE
GARIDATSYKQLIGSLMYITVTRPDLMYVVCLLSRYMASPTELHMLAAKRVLRYLKGTVELGVFYKRGDVKDLVAYTDSD
YAGDIDDRRSTSGYVFLLSGGAVSWASKKQPVVTLSTTEAEYVAAAVCACQCVWMRKVLEKIGLSQSKCSVIMCDNSSTI
KLSKNPVMHGRCKHIDVRFHFLRDLTKKEVVKLIHCGTSNQVADIMTKPLKLDVFLKLRVQLGAREVPNLN
>Copia-6_PR#LTR/Copia 51-4888 via tfasty with Copia3_XT, 56.7% SW:1642, 1 frameshift and 1 stopcodon. [Phytophthora ramorum]
MSTSADTKKETKEEKKAAHPPFDGKDFEVWFERMKLKLERKGMWKYCVKEIEEPEESKQNEHDAWMKDSARAKELLYDGM
TDKIMKTVKFEPTAFRVVERLKQRFVGKTYFKYAAEMTQLRKLRLQENGNMPDHLGEVRRLIDRIALLGKPLDEYEKPAI
LIGTLPDDYDNVVETFLASHVPRDVNDPPNYDQLEHALELAYDRRQGRKLNEGNEDQALFGGSGRGRGRGRGRGRGSDRG
RGGRSGGRGRGRGFGRGGGRGGSQGAGRGREGQVTSKERCFHCGEQSHQVRDCPHLGRRQVVPADPSHLKSKPRxKERRG
SELQRTSIAQDESDESAYVVSALIKQPPNVQKFASKRWYLDSGATSHLTNQKIDFISFTAMSALVRVGGENWLNVAGIGT
VKKEIQTTSGWRTLVLRGVRYVPELQCSLFSVRRQTAQTLPADEKVRVHFDDDEFAKVKFEQGSAKAHVDRTNLYCLELE
SPVNSALVVATDEDYKVQLWHTRLGHPGRTIFNALFRHADWPLLAVDLRIRQDFSCEACVRGKMTRKSFHSVQSSNRDWL
IGERAHVDVWGPYPVASYSGMRYFALFVDEASRFSTLFLMKERTNVYAKFQFYYERVKTQLKIRMKELRCDNARELLALG
EKCKRTYGMECSLTVKHTPEQNGVAERMIRTVTERMRCLLEHFGLPKQMWAEAAATAAYCVNIVPNKRKGMQVPYAVWFR
ETPAYSRLRTFGCAVLAYVDKVERKKMDSRAKEAVFVGYSRERRGYRLLDSKTNKAFYSHTAVFYEDKPGRILLKDGTEA
PTVPTSEYLDINATTMQNIPALLEEAQAEEMPDSECRTGGASGGAVPAEVADESRAQQISGASRETTISRKRARASGISA
PRKRVRIDEKVAPGAEAAPVKENAPRQKKRKRGKRKKPSCERCDTPNEESDGPGSRRCATPAVEQDDKETEGQQSSTRLP
GAIATTSNETLDADGDSPMGDLTVSEQRDAPRSKASKTGCREYRTKSGRVSKPPRWLSDTIHLAYGDSIEKKRSAGSSSW
EMKRDEMQFEIAKEKAMDWWQDLCCLSASMINEPETLDDAMNSEYSEEWRSAADIEYHALKKNDTWKLVPRRKGMKVLGN
RWIFRVKYLPNGKIERFKARLVVKGFMQVYGVDYLEVYSPVVRLETLRMLLTLAAIWDYEVDQMDVTTAFLNGPIDREVY
MEQPKGYEETGKEDWVCMLDKSLYGLKQAPRVWFRLLKDHLEKQGFTIMNCEACVAVKDIDGELVFISIYVDDLILFAPN
KKLMKELKQMLHVRFEMKDLGPIHYILGWEIMRNRMERTIFINQRKYADKVLHRFGMERCNGCKVPSTPDLKLSKVMRPT
TKEEKGLMSGKPYRAVIGSLMYLMLGTRPDLTYLVRECSQFLENPGILHWRAAKRGLRYLKETQDWGLQLGGVQWSQQEL
NDHLKAFADADFANRVDDRKSIAGYLTQFCGSTISWASQTERTVALHTTEAEYMALSLLVQEVIHLRQMLKELKVKQDNP
SDVFVDNESARKLANNPEFHSRTKHIDVRHHFVRERVELNEITVKRVAGTDNVADAFTKPLLRVKLEQHRASMGLISQGQ
YETTKNLCNVDNQ
>Copia-6_PD#LTR/Copia 135-4357 via tfasty with Copia-5_Pru, 76.4% SW:3656, 2 frameshifts and 1 stopcodon. [Phoenix dactylifera]
MASSTVISNPSTDITSPFFLHHSDNPGMVLVSQVLTGDNYPLWRHAMKTALLAKNKIGFIDGLLEKPDKSSATLDAWQRC
NTMVLFWIWNAVQKDLVSSIVYFETAKEAWEDLEERFSHGKAAQIYRIKRDISMHIQDQSFVASYFTTLKAYWDEINDLC
PLPTCTCGAMKELNRISQDEKVFQFLMGLNDSFSTVRSQILTMEPLPTVSKTFSLILQEEKQKALQVKPMQSLEGAAMAT
SRFDKHDSSHSGNQRGGRGGRGRPHCDYCNNLGHTRDTCYKLHGYPNHHGGTKTPTPAANHVANSENPLGPSIVPQLTPE
QYVQLLSILNIDKTTTSINMTGIPSNSQPVTWVIDIGASDHMVSDSNLFLSLEPLPTRQSIKLPTGDTVQITQKGTIKMS
PSLELKNILCVPTFNLNLLSISKFTKTHNCVAIFFSDFCIFQDLSTRKLIGLGKEKDGLYYYKGPVSPTSTAYCTQLSLW
HNRLGHPSTPRLKVLAQDISIPLSTFQNKIDSCTVCPLAKQTRISFPTSTSVTSSIFELIHIDIWGGYSIPSHTGAHYFL
TIVDDFSRCTWIFLMRFKHEIFYLLKKFIALVDNQFSRKIKMVRSDNGMEFMDHQLQTYLDSLEIIHQTSCVGTPQQNGV
VERKHRHLLEVARALRFQANLPIQFWGECVLTAAYLINRLSSPILGGKSPHEMLFEKKPSYHHLRTFGCLCFAHIQAKNK
FGPRARKCIFVGYPYGQKGYRVYDLLEKKIFTSRDVVFHESVFSFANTSHIFPSSQSPILPHITDNGDEPILSTPSIDLP
SSPTRPSSTSNQDSIEPVDLSETSVDPPPKRSTRIRRPPQWLQDFQCSQVSSFSCPYQNNLVTGTKYPLQNYLFFDKFSS
SHRAFLASIFSSQEPKSFSSAMKHAHWRDAMADEIKALEFNHTWTVMPLPPGKHAIGCKWVYKIKYKSDGSIERYKARLV
AKGYTQAEGLDYHETFAPIAKLVTVRCLIAIAAAKQWHLYQLDVNNAFLHGDLHEEVYMQLPPDFSRKGEKGEQLVCRLN
KSLYGLKQASRNWFSKFSTALLQAGFTQSVADYSLFTLKSKGNITIVLVYVDDILITGSDPSSIASTKSFLQDQFRIKDL
GTLKYFLGIEVARSSKGIFLSQQKYALDILEDAAVLGAKPAHTPMEQNLKLSPDVGEPLHDPGPYRRLIGRLIYLTITHP
DITFAVNLLSQFMQAPRQPHMDAALRVLRYLKSRPGFGILMPASNNFHLSAYCDADWATCSTTRRSVTGYCSFLGDSPIS
WRTKKxSIVSRSTAEAEYRSMASTTCELVWLKTLLSDLAIHHPQPMSLYCDNQAALHIAANPVFHERTKHIEIDCHVVRK
KTTSRTIQTKFLRSDNQRADIFTKALGRDQFFYLLRKLGITDLHTPT
>Copia-6_BG#LTR/Copia 185-4705 57.3% sim to Copia-35_CQ, SW:732, [Blumeria graminis]
MNSSRIILTTSCDWRPWLFVIKTMAIGGDVWKYINPDLTTPPAEPIRPTPPLVSEASNEPEHTTLSSLTADERDIFKMLY
SQFKEDLALAKQEIDTLKSIRTHLVTSVSKENIVYIESKETIHDMLVSLKKRLAPTDEARKLEVIDKYHRLRTFDRGTDV
EAWCKEWETTFADAVALDLPEVSHNRSQNDFAIALKTIDEAYASAQQFWLQQSSKVNSKTDIPSLYDMVEDFRNHYRRNQ
ALNTSVRMGAFSVTSQNKHEQGNNKDLNDSSRLLKNCLCGEKHRYKHCYYITPSERPQGWEGKREVFEEINKKVDLLKNR
TGKRLKTWFLSTFKYDGFDSPPILTGKDVSKEPAAPKSLGVFTTYSSFEAASSEDYKLYHSWTLDSASDTHVCNDPTISG
WVTTKDANPGDLIFAGKSSYPIEAFGTVTLYVQTKEGVASIQLQNVALPPGFMTNLVSLDILNSKGVHWNSEYPSILSRN
SKEFCYLQKIGKHWTVQKDVREVNNLSSFHTASSHNPRNSSFTANELHSILAHASTEAISHVRGSDIEIDYSIPCPTTIE
CETCSLSKAKQQISRRKEVEFESDGNPFFRIAWDMIEFERAFNGDNYGSHIRCRDYGFEFSGTHPTKPGALIFLKQIVIL
IEENLGYKIHFCRLDGETTFGQSFRDFMAERGILAERTAPDTSEQNGGLERSGGVIVVKSRSFSIGANLPTKLWNEAFNA
ATYIKNRTPHRHLRWKTPYEIVHKIQPTYAHMHPYGCRAYALEHKIPRKLKMLPRAHIGYLVGYDSRNIYRIWIPSKKRV
IRTQDVTFDHLKFWTADDIDMGDILHESVDMILNTLELPQIDVQEVAEEEDLLNEMGLDVLVDCGIGGLRSDEDIAKIND
EAETQRYDTPTCDNRRVAQLPTPSNTPEPSTATINSQDALKNNGISLPRGESRILHGLDPGNILHGKRRRFKAHSVQKLS
RLEGYHSAFSSAIRTTEVVRVHRNTLPMAPKTFRQIAGHIHSSQFKQACDKEIKALFEKGMFEFVNEHDVPMNENVLPLM
WVMSYKFDENGFLDRHKARLVARGDLEFNQDDTYASTLAAQTFRVISSIASAFDLEMKQYDAVNAFANAKLPNPVYCKCP
EGYEKEGHVMRALQAIYGLRKSPLLWYNEITLGFKRLGLTPVPETSCLYKNDWLMVMIYVDDLILVYHSRDQAKFLKFES
QLLALYEFHVMGDATHFIGIRIIRNREDRKLWLTQDSYIEKISEKFNIKVNKVPKTPLPLGVNWSIWKGTATPNQISAYQ
QRVGSIGFSAFATRPDISKAVSDLSGVLHNPSPEQLQAAEHCLHYLVGTKHLALQFDGLTQGQRIFGAYSDSAFADDITN
RYSSHGFCFSLYGGPIHWKATKGKAVTTSSTEAELLAITFTAKEFIRWIRFFSYLNFDLQEKPTIYCDNIQTIRILTKES
PKLDTALKHVDIHQNWLRQEVQLGHIEVEWINTADMVADGFTKILTTSKHAELMRQLNLCDVRDTLK
>Copia-5_BG#LTR/Copia 5-4069 64.3% sim to Copia-1_BM, SW:1541, [Blumeria graminis]
MSPDSALPASMSVETAPISVGNLKANLPVLSSQSQYRTWAQTWQVVLMGCNYWRVITDHDHNKETRPKNAGSNKMENVKN
IPSTEQEEYDTKNNAALAAILAGVSTDLQRIVAGFVGQPESARLAWKALKNKFDHETTISTLELFKSLVTLEMKEGDIIS
DHISNFETTYAHIFNRCSESSREEAQHLEQFLASDSVKTMTFLYTLPRSFENVVDNLMSKERLTFDDVNKRMLDIQASRS
STSSSDSKAYFVDDKNSSTRGDKKKGKECSWCKSRNKKYKGHIHSECRQLKAAQEENRGAKGKEKANTATITENIESSSY
QELDFSVEKAFASRPLLTSHPWILDSGATAHMTPFREDFSSLSPKNGSVSSVSGSLTPIHGFGKIEFNTRLSTRQIITAK
FDNVLFVPGLGVRLLSESKLDENGFQIVSNGGERRVLKNGEEWLYARKDSGQFIVQTVVEKSAFASYLDAHEALGHAGTS
VMSQMRKVDSSIPPKPDSFTCIACLRCKSKHQTPKSTHKRASKKFDLIHSDLSGRFSVKSLGGKEYYITFIDDFSRYAWI
YFLTHKSAASKAIQDFVHMIKTQFDTTIKSFQSDNGGEYVNSDVENFLAETGIILRNSPAYSHESNGIAERFNQTVVTKA
RIMLMDHGKFLWAEAISMAVYLYNRLPHRSINGQSPIEALTGHPFTSTTHLHPFGSNALVHIPEEARPPGSKLMPRAMDG
ILVGYTNSTKIFRIYVPSRRSVIVSRQVIFPPAMQGEVSLDINIPEKTTPSSSSKADSSPSSPTHCSVTPPKETNMPGGH
FDSPTNLTIPAVFDPSGHKPQDNNSAAPRRSTRIKRKPDRLENYKAHAVIEEPNTHKQAMATENAERWKEAINEEMDALR
RNDTWTVVPRPDDRSVVGSRWVFKVKYNADGSIERYKARVVAKGFSQIPGTDFEETYAPVVRFDSLRLLLALAAHNNWEV
IQMDVKSAFLYGKLDRDIYMEIPDGFKESNMVYKLQKCIYGLKQSPLVWHLTLKNALTKYGFVSTSFDPCVFVHNKTTVY
VAVYVDDILISGSDSKVINGTRQFLHSEFECTDLGKAHFILGIEIEITPQGISLSQHSYFLKVLKRFGMLDCHPVGTPLE
PNGHLQRVDPADQIDHISTYQSLVGSLMYGHIGTRPDLAFPVTHLSQFSSCPGSTHLAAAKRVLRYLKGTIHHKLFFPSK
HDSLIHGFADASWGNNLDDRKSYSGYVFRLGEASISWCAQKQKAVALSTVEAEYMAICLSSRHLIWLCRAIKELRQSYGA
ILHADSNGAIDLSGNNKVTQRSKHIDIQYHFVRDYVGKDFELEYVPSSENLADLFTKALPKTTHQILTQQILMQF
>Copia-5_AA#LTR/Copia 97-3990 via tfasty with Copia-135_AA, 82.0% SW:3755, 1 stopcodon. [Aedes aegypti]
MDASKVMMERLNNANYEAWRFRIEMLLIREGLWKHISEEVPNPVTSEWKQGDDKARATIALFVKDNQYPIIRDCKTSRET
WEVLKKHHQSVSLTSRFTLLKRICQLQFRDGDDMEQHFQEMERLFSRLSNAGQKLDSQLMVAMVLRSLPESYDTLTTALE
SRSDDELTMDLVKCKLMDESMKRRKYLSRGESLLRVESSKKQILCHNCGKPGNVEKDCRLQSYQKVDESRRKFKPKARTV
KEEESSMFCFTVRNKPTAMNSWVIDSGASTHMCAEKRFFKHYKTCSGITVTLADGSEVSVAGKGSGTLQCTVDNRETQVT
ITDVLHVPKLDANLVSVGKLTEKNAEVIFTGETCKILKHGHVAAIAVKKSDLYQLETLNNSKSITAMSVKHAENCIHKWH
RILGHRDEEAIRKLVRDDLVTGIQIxKCEVNADCECCLEGKMTRLPFPKQAGPQSSKMLELVHTDLCGPMNTVTPGGARY
FMTIIDDFTRYCTVYFLRKKSEVTERMEEYIWMVETRFGKTPAIIRSDCGGEYKSSNLDRLYRQKGIIPQYTAAYSPQQN
GVAERKNRSLVEMARCMLIDAGIDYKYWAEAINTASHIQNLLPTRATARTPYEAWYKKTPDLKHLHIFGSSAFIHIPDQR
RTKLEPKGIKLTFVGYSDNQKAYRFVDLATNKVYHSRDVRFVNEGKPLKIFSKPSILVEYESILEPSISNDLSIDEGNQE
FETEDDQSTSDESYLDCSQGIDTEDELVTLQTPPENIRRSERSTKGIPPTRYCEVADMIKKNIPEPRTIKEALASPESEL
WRAAVEEELQSHKENCTWNIVSLPHGRKTIGCKWIFKRKIDETGKVVRYKARLVAQGFTQKFGTDYDEVFAPVVKQTTFR
TLLSVAHQRNMLIKHVDVKTAYLNGELQETVYMKPPPGCDYEDPSLVCHLQKGLYGLKQAANIWNKKLDSVLRKLRFKPS
ESDPCLYSKHNDDGTMSFIAVYVDDLLIVCKSEKEHEAIFKNLNSHFKVTSLGDITHFLGIHVIRSQDGVSLNQKAYIQK
LLTRFGLQDAKSSKIPLDPGYIQSKEEETERLPNNHQFASLIGGLLYIAVNTRPDIAVAVSILGRKTSNPSQDDWNEAKR
VLRYLKGTIDHRLVLGIDSSQLEVFVDADWAGDSKDRKSTSGFLFRYAGGMIGWNARKQDNVTLSSTEAEYVAMADCCKE
LTWILRLFNDLKIVTTLPVKINEDNQSCIKQLSAPNINRRSKHIEKKYHFIRQLKQDGIINPQYLPTEDMIADMMTKLLY
GIKLSKFRDQARVISSRR
>Copia-5_CP#LTR/Copia 1033-5055  [Carica papaya]
MLNDTNFKQWKNSVRLVLGVMDLDWALRVDQPDPITPDSTPEEKKEFERWDRSNRMSMLVMEQAIPEVFRGTMSDEITTA
RDFLHSLEQRFARSDKAEACTLLSTLVSMRYKGNGNIREHIMEMSHVHAKLKALRVELSEEVLVYFVLISLPPQFNHFKV
TYNCQKESWNLNELISHCVQEEERLKSERTESAHLAVISKDKKNKKKKTGKSVAVPVQQKKQQKVQTENVCFFCKAPGHQ
KKQCANYHAWRAKKCMLLNFVCSEVNLTSVPTHTWWIDSGATTHISVSMQGCLHCRKPSDGARFIYVGDGKPVEVEAIGK
FRLLLRTGFYLDLEETFIVPSFRRNVISVSVLDKFGYSCSFGNEKFSLFLNSNLVGSGSLSVHDNLYLLDTIASYNESLH
VGTRGVKRKLTKENSASLWHKRLGHISQRRIERLVSDEILDPLDFSDFDRCVHCIKEKQTNIKRLGANRAMDVLELIHTD
ICGPFPTASWNGQQYFITFIDDYSRYDYLYLIHEKSQSLDVFKSFKAEVENQLNKRIKAVRSDRGGEYYGRSDGSGEQRP
GPFARFLEECGIVPQYTMPGSPSMNGVAERRNRTLKDMVRSMISHSTLPESLWGEALKTATYLLNRVPTKATTKTPYELW
TGKKPSLRHLHIWGCPAEARPYRPQEKKLDSRTVSCYFVGYSERSRGYKFYDPTTKIIFETENAQFFEDVEFAGGERVRD
LVFEEEWVDIPIPSVALDNDQDQVLIPSIVQEATPDQDNVIVSPVPVQETIPEAQTSHPQELMPLRRSTRERRSAIPDDY
IVYLQEHEFDIGTVEDDPINFCQAMESSNSQKWIDAMNEEIKSMKDNDVWDLVPLPKDAKPIGCKWIFKTKRDSKGNVER
YKARLVAKGFTQKEDIDYKETFSPVSSKDSFRTIMALVAHFDLELHQMDVKTTFLNGDIDETIYMVQPENFVSGDAQQMV
CKLKKSIYGLKQASRQWYHKFHQVVISFGFEMNLVEDCVYHKFSGSKYIFLVLYVDDILLASSDIGLLHETKRFLTKKFE
MKDLGDASFVLGIQIHRDRSRGILGLSQKSYIEKVLKRFGMQDCKPGDTPVSKGDKFTLSQCPKNDLETTEMQKIPYASA
VGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKAAKRVMRYLQRTKDYMLTYRRSDQLEIIGYSDSDFAGCQDSRKST
SGYIYLLAGGAISWKSAKQTLVASSTMAAEFVACYEASNHGIWLRNFVTGLRIVDGIERPLKLFCDNKSAVMYSNNNRSS
TKSKHIDIKFLVVKERVQSKQISIEHIGTNSMIADPLTKGLPPKVFHEHTAHMGVVSLDDV
>Copia-5_PR#LTR/Copia 276-5144 via tfasty with SHACOP15_MT, 55.9% SW:1566, 1 stopcodon. [Phytophthora ramorum]
MADTKKEVKESKDERKSIPPFDGKDFEVWLERVRLKLQRKQLWQYCEKDVVEPEESKQGDHDDWVTKTSRTKEILYEAMT
NQMMKTVKYESTPYRVMERLKRRFMGKTYLKYAEESTKLSRLRLDSKGNLPDHLSEMRRIMETISVVGRPVDEYAKPAIL
IGSLPRDYDNVVQTFLASHTTQNPDDPPNYEQLEQALEMAYDHTQNRKAEGSKGDEEDKAFFAGGGRGRGRGASRGRGRG
RGGRGRGFGGRGGANQGGGRGAGRGAGRGQGSVGSKRGDGCFHCHEQEHQVRDCPYLGKRPPFETQRGGSANKRSKFNGG
DKSAKAGSKGGDDNGSDDNAYVIMSLMKLEKKVADIAHDRWYLDSGATSHMTNQKEDFVSFTPVSSTVRTGGKNWLEVVG
VGTVKKELITSSGRVLVLLRGVRYVPELQCSLFSVGRQASRSLESTERVRCHFDDDEYADVLLPSGRTTARRDETNLYRL
RLGRPSDAAMMASSEGVDKVELWHDRLGHPGRNAFNALFRHTRWPMRRLELRVSNGFSCDTCVKGKLTRKSFRNTRSAPT
REWLIGERTHIDIWGPYAIDSYSGKRYFAVFVDEASRFATLYLLAERTEVYEKLDIYYQQVKTLLNVRMKEVRNDNAKEL
SKLAAVCTKKYGMECTSSVKHTPEQNGVAERMIRTISERMRCLLNHFRLPEEMWAEAAVTATYCVNIMPNSTRDMEVPYA
VWYRELPAYSRLRTFGCAVLAYVDKVERRKMQSKAREAIFVGYTSEKRGYRLLDSKTRKAFYSHTAVFYERKAGRIATGS
TPTLDTTVPVERYLEMDSAAMENIPAILDEMHEDDTEEDADCESVGSSDVHPDLPGGADDRSARTGGAKGAVARGDILAG
DKRSSKSIKHCETPQKRTWSENDLTVSGAAPDDTEHLHIENESEQSSKSKYKKRKRCRGRRKAPTADASLQQDASCGESS
IQEGASSSETRAMETAGSETSVHRDGSNTERLQISSCIGLREYVAPGAACTKDCPVTRSGRASKPPAWLGDYIYVAYANS
NSDEFASSSVSWEKTREEMQRAMAKEQALAWWQDYCCLTMGVINEPETYANAIESEFSVEWKAAAQAEYNALIKNFTWEL
VPRQNNMKVLRNRWVFRVKYKADGEIDRFKARLVIKGFMQVYGIDYLEVYSPVVRLETLRVLLTLAAAWDYEIHQMDVTT
AFLNGKIDVEVYMEQPDGFKVPEKETWVCRLLKSLYGLKQAPRVWFQLLKSFLEEQGFTLLKSEACVAVKIIDDQLVFIP
LYVDDLILFAPNMNLIKEMKQMFFxRFDMKDLGELHYILGWEITRNRSERAVFISQRKYAKLVLERFGMEKCNGCKTPCT
ADLKLAKSMCAADADEKPLMSSKPYRSVVGSLMYLMMGSRPDLAYLVRECSQYLENPGILHWRAAKRGIRYLQETLDWGI
RLGGEQWTDQELDRHLEAFADADFANRTDDRKSVAGYLTKFCGSTISWCSQTEKTVALHTTEAEYMALSLLVQEVIHLRQ
MLKELQVQQKAPTEVFVDNESAKKLAVNPAFHSRTKHIDVRHHFIRERVDMKEIEVLRVPGSENVADAFTKPLSRAKFEK
HREVMGLMPRTKFEQTECSGRNQ
>Copia-5_GM#LTR/Copia 135-4553  [Glycine max]
MALQNFVDFSTNSANPYYLHPNENPALVLVSPSLTAKNYHTWSHSMHIALISKNKDKFIDGSLPKPPVSDPLYAPWIRCN
TMVLAWIHRSISDSIAKSVLWIDTAAGVWKNLRIRFSQSDIFRISDLQEDLYRFRQGTLDVSDYFTQLKIYWDELENYRP
IPHCKCSIPCSCGGIDSVRVYREQDYVVRFLKGLNDRFSHSKSQIMMMNPLPDIDHVFSLVIQQEREMLGSNSDSVSEAT
SDSAMAMQVNSNQSNFNGKGGYYNKGKGSSKGGNRVCTHCGKTNHIVDNCFEKIGYPPGYKTNKSKNSSSSSQANNTSNA
SALESTQQGSSAQSSFQFTQEMYQGILEALQQSKVGSQPKANSVTTSPFALHSPSSNPNGKNPSLWILDTGATDHITFDL
SSLTTYQNIVPVPVSLPNGSQVLASISGSVVISPLITIHHVLYIPCFHVNLMSVTKLASTNNCHLSFTTDLCKILQNHSL
ETIGTAKLQRGLYVIDTADMIRSCNSISSHSFELWHSRLGHVSNSGMQAISKQFPFIPCKNNMSPYDSCHFSKQKRLPFP
NSITTSLSPFELLHADVWGPYSTISLLGHKYFLTLVDDYSRFTWVIFLKNKSETKNHIINFVAYLENQFNTSLKCLRSDN
GTEFALNDFFLSKGIIHQKSCVETPQQNGVVERKHQHILNVARSFFFHSNVPLTMWNFCVQHAVHVINRIPSPLLKSKSP
YELLFKLPPTLLHLKVFGCLSYATTIQAHRTKFDSRARKCVFIGYKDGTKGYMLYDLHSHNIFLSRNVIFYEHCLPFKTV
PGPTPSNTPSNFPLYDDPLDISPHPCVDSSPLSTGLIDSTSTSPASIPPIDHTLDSSSLPTPAVTAHPTHPTSDLDQNSI
DQTSSHITNVPVTLEPPLPLSTRVSTRPKRPPGYLQDYHCNVISSCTNQFSSNVAYPLSSVLSYNNCSPDYKIFCCSISS
TIEPKTYNQASKFDCWKKAMDAEITALEVNKTWTVVDLPCGKVPVGCKWVYKIKYHANGTIERYKARLVAKGYTQMEGVD
YFDTFSPVAKMTTVRVLLAVAAVRGWHLEQLDVNNAFLHGDLNEEVYMSLPPGYDASSPSKVCKLNKSLYGLKQASRQWY
SKLSTALTSLGYQVSQADHSLYVRSDDTSFTALLVYVDDIVLAGTSMEEIKSVKLFLDQQFKIKDLGQLRFFLGLEIARS
SSGIFLNQRKYTLELLEDTGFLGSKPASVPLDPHTKLSATDGVPFDDPSGYRRLIGRLLYLTHTRPDISFSVQHLSQYVS
NPLVPHYQAATRTLRYLKSCPAKGILLSSHSPLQLHGFADSDWACCPNTRRSITGYCVLLGSSLISWKSKKQNTVSRSST
EAEYRALASLTCELQWLQYLFQDLNITFPQSASVYCDNKSAIYLAHNPTFHERSKHIELDCHIIRQKLQSKLIHLLPVPS
QSQLADVFTKPLHSPSFSSMMSKLGLCSIHHPT
>Copia-1_MVPL#LTR/Copia 10-4116 via tfasty with Copia-6_SMo, 61.1% SW:1404, 4 stopcodons. [Microbotryum violaceum]
MSLFAATDLPHSKVDKLHNSFVKLKDESNYASWHKKMTLLFMGHKVMGSVLGEQVKPLSVPRPPATDIPDAAELDASADR
QKKIATWTDRDIWAQSHIMATLSPEIEGMVMYCETSHEMWDLLEKKYRKRGHNALYSGLVCLLSTKYRDGDSIDEHITKL
LTYSAELMKIGKPVPDEYLNVFILFSLPPSWSVVNTWYKQAAAIDEKVTIRPSLVVEHIQSEAQRRATANMQLVPVKVSS
SSNAGALSANALKMCDFCNRKGHNADERYTNPNGQGYRPPQGKQSRKRGKARSVKSTQSSNQEAVAFSVMSTGQSAKSRF
IIDSGAWKNHTGDHTQLTDFIEDPxEAETANGQWVVCPGHGTLSIETAGGRKLEAKKVYHMPGMPVGLLSVQQMTNSGLS
VHFEPDKLCTILRNGEFIASTIVLDGPYELDIKQPKLALATHETVSAPLMLWHRRFGHPSPQTIINMARSGAVQGLVLSD
KLIRDCLHCVLAKSKRSPFTIKATIATEILKRVCIDLGFVPEPDHQGRTVYLAIVDQHSCGRWVFPLSSKLSEGVIEAFN
MFRTSVENMTGKKIRFVRSDNGGEFTSKMFETYFKTNGIIHERTAPYTPENNGQVERLNGSIMTTVKAMLHDANLPKTFW
SYAMQAAVYLSNRTTVACLNRVTPYKIIFGKKPRVSHIKPFGAVAFVHIDGTLRTKLDDKAVEGILVGFNNYDYVVWLKD
QQKEVRTRHATFGRRKHHLLETSELVTDFEVPPISEISEKDSTVTPAEKEVPQQLVPVPDGYIQVQNGYQPGKYGELDMS
NIIPYKHRQALFAGPALDSSSSNLQFIRIDDVLPQIDGKWGKTYLCVSVPQGHFIPKTYEEAIPCPDAKFWIIAIREELG
ALENHNVFEVSFLPDGAIALGSRWVFTIKLDAAGRIIHFKARLVAQGFAQRPGIDFHETFAPVARMLTIRFLVALAIARS
LKLVQFDFDTAFLNGKMTDDVYMRVPKGWTGVIKPGQCLKLIASMYGTKQAPRKWNRTLDQLMVEKKWTKCLSDVCLYFK
QVGSKYIIVAFYVDDGLVASTSQELIETEIGALQATFKLKxQGAVSHFLSLEFKRDAGYCIVHQSRYITDILARFGFASS
KPKTTPMIDCEARELDLLPLIKDVHLYQSMVGALQYTAQMVxPEIAAAVRSAAQRLAGPTENDLLAVKRIFxYLVGTIDF
GLCYRPNASTVITAYSDASWANNFETRRSVGAYVRLLGGAAISWQSKQQTLVTTSTTESEILAVLSATKEVIWLHQVAKD
LSVEQPSATTIYEDNQATIKITYNPAHHARTKHFDVVHHFVRERVTLGDIKLVYCPTNSMMANVLTKGLGPIKFAAHRKA
MGMVQLSKL
>Copia-1_MPA#LTR/Copia 1035-6361 via tfasty with Copia-28_BG, 52.6% SW:1186, 1 frameshift and 4 stopcodons. [Magnaporthe poae]
MGRKKRKASKSNRSYFDMAEGFSMAMDENLADQVQRQGTEISNLTNQVDLLQQQNQKILALLQALQPKEENPPGGTLDRG
KGKAVEDVKLESSAVPAGGPATGGPAPGGSPAGGPNNAEGDSGPPKEIWAFTNPAIKEMSKSVYSFPEAHKLRGAQNYQE
WRHALVIQFTAVGLADFLINPMLANSVSAADQATILLLLKNSCSAETIHTITWETSPVNALKALQDSYSLTPEIQRDALY
REFHALDFSKYKGSISEFNSQFTSLLIRLRNCSVEISAIDIKNQYLKALEGSFPQWAERLRSTIRSAIALGQSTEGINLQ
YLMADLLAETNNPISTAAKQAASHRAQRQNKKPKDSAEGAKEKNKAGKKGKNSDPKDKAAGQKGEPSEDKPKEKDFKGKK
SKGKKEKDGNESPDNKKGGKSTAFVAVNYDLITGSTTESATEQISGTNYAKDSGIVDLDALDLSNSSESDSESGSDSDAN
TVDITHCKCCDHAKSNTRDSKYKGMSPVLYDTGSTDHIFNSMESFTAFSKNCNVVIRTGGGLVYPLGVGTVKLPVRCSEK
PGDFEEITLKEALYIPSFDVNIISGLRHYRAGGALYNQKLFNAERHCWGILNVKDHGFFLQCKGYAYPTVRHRQNRYCSF
YGLAQRITIDLKNTPPADREKYVRFDTDSEENTDSSDEQPLKEPPKGKAILNRKKKAVINSDMPKLSAESPEDSRVVEPC
ELGRPLGKSPEKPIPEDITLPKRGTSHARDPLPESPPVGKVQAAPFINITPKSLQKSADGWVSAEGDVIKGCDEETALKA
LLWHRRLGHIGLTLLKKTAKITDGLPNFDKIQGLQCVICAKTTAVRRTGKGPLPSPGNVLDSIEGDTVVLSPTPHNKKPV
ILLLVDRKSRFRWVFQLPNKQGPTVMAAIKSFFRALKATYGRTLRRFFFDGGKEVNTALKEWLERKGTAFSTSNPYNHGQ
NGLSERSIRVVMDRLRATINAAGLPHYLWCYVLSAVVELVNATAVTNRETTPYQEFYDEVEPGPRHRPDLGHYRVIGTHA
EALIPLEHRAKSKKLATRTEPVRLLAALSKSTVLVYAPARRAIYKTSTIKILEGVPVKNLVPEGDMILEGVSIENPPEGS
ASSAPNNAPRAPDSDSESDMEPDFQRYDSPAVPDPDYRLPEPVIPTVRPPEKPIVMAPPTPKIQEIVDEIPVLQDLLGGK
TPNPDAMEVDELVQYICYKATQTIKRKKPTRDGEPNSYKEALKSPYKKEWLTALGLEFEQLLRAGTFNFLPQSALPKGRK
LITCRPVFKLKKDNQNRPVKYKARLVAKGFLQIEGLDYFETFASTSIPPTWRILLAFAAAKNWEIEQIDFIGAFLNSDLD
VDIYLSIPEGFSEWLATATTDIKQLANNLGFKPSEKQVILLKKALYGLKQGPREWQNKLISLLKEEGYNQLISDPAVFFN
AKIKHFIITFVDDCLIIGPDMRYISALKRSLHKVYALENRGPAAYFLGVQIIRDRPKRQLWIHQSQYIDEMLKTFGLDAS
RSISIPLQPGVLKDTKGQPVTSAETKLLQRIIGTVMYLMLLTRPDISFAVSMDFTPFNKGHQYAYxCRxKPIKVLxLARV
IxLFGTAITLKIRGLTNPLQVLGFSDSDFAGDMDSSKSTYGYLFTLLGGPICWKCKRASTIALSTVEAETDALTETIREA
KWLRYLFIELQTPIKGPIAVFGDNQGSISNAHNPNLHSRTKHTLLKFHFVREEVGAGTITIEYLDTKSMPADGLTKPLTP
PKHKAFLGLMGLRPKA
>Copia-1_PAD#LTR/Copia 5-3974 via tfasty with TPA5, 67.3% SW:2380, 2 frameshifts and 1 stopcodon. [Pichia angusta]
MSPASAFWATNSFNDDDKLMSAANFMRWKTKFTNTLNSFEPSVVDYIQTGNIPFSLEQCGGNEQVIEIQAAYDQLLLFWV
HTSVSQPVKNLISQDQTGYQKYHLLIKCYGQISFRQLYEEYCSINSSNGQGPMEWGAKCVNLLQWNQDPAVWLIFSKLSS
LQNEKLERYLFADCGNELTIQRAVTAMQLFEHETKSGFLATKRSIQTTKKKNIICARCQKAGHKSPNCRAPTPVSKGNLG
LNRNHFTDFRTTNGYISGIASGVQVNGKRTVVLSKRHKTVTLKDVLYAPQCPSNLIAINKAVLAGKEIKISNKKLWCGKD
LLGTYHHQNKLFKYTYKVMSSSSYSKAYxASVSDLHIVMGHPPKSISARLQIPNPPHPCQDFLAGRPVKSKRKISSTSVS
RPLKLLHADICGPFPHTGINGEKYFLVIVDRFTHITSSYCLKVKSEATDLIQQFITNLRHNCHRHNYKVTTLRTDNGGEF
VNKSLETFLASKGITQELTVAHSSHQNGVAERMNRVITSRARILLSSSGCLESYWPFAVQMATYLVNREPSRAIQFEIPY
SCWFHKSPDYSRYHPFGCKAYSLVDSHERPSKFSSVISPLIFVGYSKRRTAFQLIDPHTLKLKETDQVRFDDTCFPFKQD
TSLDFKPQSSHVPIMVPPTYGLITDSHLLTTSIIPKEPVPCSRSPSPSGSDSAPMDPPSTTSDLHNASAAPPLGPMLVTI
PTTIQDSVSPVLEHLEDGTTSAEVTASSERDSTDHSTIRLLTAVNAPPTSEMDLHHCIHPVLYPGRRSKRSRLPITKYRR
LNNSTDHSSALVALPGSDHVPSSVSEALSIPEWKQAMQREFQAQLDNHTWSLVDLPSGRRAIGCRWVYTMKPSTSTFPHK
ARLVAQGFSQIHGIDYNETFSPVIRYDSLRLLLALAASHSLSVYQMDVTTAFLNGNLVEELYMRQPPGFISTDHPQRVCR
LHKSLYGLKQAPLCWNHTIDQVLVQANFTRIKSDYGIYVSHSSPPTYVALYVDDLLILSKSLTQIKSVQSLLSSKFQMKD
LGPVTTFLGLNIRQTPQSITLSLSSYLTSILQDFGLDTCNPVTRVSTTTAWISDHDVPLTDPTLFRSMVEKLLFAANTAR
PDITFTVAKLSRYLKQPSQNHLTIAKHVLRYLKGTIDDGITYTRTSSVELKGFCDADWGGILEDRTSTTGYIFMLANGPI
SWKSKKQNSIATSTTEAEYMAMSDAVKELLWLKQLMKELSVLGSYVPILFGDNTSSISLAKHPTQHQRTKHIDIRYHFIR
DHILKGDLQIEYVDSQSNIADLLTKQLVREKLNSLKKKMHLAKI
>Copia-1_PPa#LTR/Copia 374-4422 via tfasty with ATCopia76, 1 frameshift and 7 stopcodons. [Physcomitrella patens]
MASSMDHCIDRLDEKNYGTWTFVMKYLMRICKLYMHVDGTLKCPMDIDEKLKWKSSKAEAQALIALNVKPLQLTHICKCN
IAKEMWDILAKIHKPSRVITEIFLMKKLYNLxYVDGESMEIFLGEIFDLRDQYIEVGGEMDKQSMAFLILTTLPKSxDLL
IQSIALKKRKEITEEVVQSILLEEEMQKKEKTSSPFFALVVHARRKxVLKKHHLQQKQKPKIDKSRSTCRACGQKGHWQG
DAECPKTNSNGIVNVRIVVILSAQEASFNSKTMIASLSQLRHYVCIDSAIDVHIQRDKSKLLNFDENVTIQLQGYDGGIS
KSQGSGEMHLIVLDPIRKYILVVVKDVHWILGAHDTLLSAATLCKKGCKFNLDVNGVDWILPSGDLLTQGMLASKAYLMP
CEIEEVATISSSSILSHTLIEWHQALAHASMHTIERQSRxIILKGLKIKEEKDKIPICESCIVGKAHRQPFSHKHKHANG
ILDVIVSDLGYFDTTSFGGTKWLAVWIDEYFGYCSLAFLQTKDQVHVAYKTWKAEAQRRTRRKIKTFFIDQGIEFLNNKL
GSHFKAEGIWHMITLAYTHEIVGMAEHMMWTIFEGVQTLLDDAKLDCQYWAFAAKFVTWTCNCLLLARLGGKIPHEVFYG
KKPSLQNAHCFGFLAWYHISKEKRQKLDAKARKDIFVGYSKVAKGYEIFLLEEKKMILSRDVIFFNNKDELLGEPLISQE
KIGKDMDHRNNLDILDFQHPNELEISQPQASRLHVHDGLDGKMVEEEANPIPIKVVEFHQPKVEATTQALPPRCRYVSGI
DPTNIISGSRMHCMPxKKDNNFIxGDYDLPIEIVDVVHVDEYAKPETIEQAMNSPFCKEWSHAMKEELDSLKDHGTWKFL
FLSNGKKAVDSKWIFKKKLASNGSIECFKAQLVAKDFIQVKGLDYxETFAPIARLAIICIFVAIAAILNWNMLQLDVVSA
YLNDKLKEEDIYMKILKGLEVPSEHKGKVLQLLKTLYGLKQSRRGWNESLDKSLLNLGWKRSKSDPCLYTMYIEGLVLAL
IIYVDDVLIGGKNFEILVKYKDELQECYKMKDLGEPSDFLCIDFLQDKKNGTINLSQTKYICRKLEEFGMKDAKAIATPM
VQSHVTKHENDDLLDAKGVKLYQKALGLLLYLVNGTRYDIAFACQYFAQYMAHPYVLHWQGIKQIFCYLQGTKYLVLQYR
RKEANLQLVGYSDADGAGCVETRHSVGGYAFILGGTIITWSSKKQSLVSVLSTEAKYAALAAATRETLWLCKVLRNYDIL
EPKRILIYEDNQNAIAIAKNPAHHGHTKHWDIEHHFIRQCVEKGQIGLEYCPTEQMAADIFTKPLLEISF
>Copia-1_PGr#LTR/Copia 59-4300  [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MAGRSTRAQNQPEPPEPSTAPKREASKDDKDQVKCPTFTGVNFPIWKRKMWVFLKYKRLLYCIEQPMSEEPSEQEEEDYL
AAAATLGSHISDKVYNHVINDDNIQDAYQIWQELKSGYAAATVLAIFRTWSRWEDVRYEGSMLQYIKDMESVLAEFAAMG
LDIPPKLISCGIIARVTKKRSALMETLISSTALLESPKQLIAKLRDIGNHDEATAAPAQNQTATTTALATQAYVPRSRGN
NHHRGSSTRGRGRPPKRVRVNCEGGHHPNAGHPEEECWTLHPEKYEEAMQRRANPPTTGLLTTAASQPQVEVRPSYGYYT
NVDSLPQGDKAVLDSGASHHMLNDARMFVTRTPVNIVVLTGNRVGGNELVATARGTAVLNFDNGATLELADALHVPSLAR
NLVSMVQLLHRQVTIEGGDGRYQVKIDRQQPFPVNTSNYILEIDGVRQPAPLPQANSAMAQVELGAELSDFERWHVRLGH
ASSARIQAVLKDSVRLGKPATCQACMAGKLTRLPFNSHFKPAVEPLQVVHGDLVGPITPATNGGARYFLTLVDQYSGHIS
TKILKLKSDALEAIKSYIAYVERQTGHKVKKFVTDGGGEFVNKALTEILTEAGIQHNVSPPYTPQHNGFAERANRTIIEM
TWTLLMQANLAPEWWGEAVTAATATTNCLPSLAKSKASPIELMFKSTPNIEIFRPFGCRAWIIKPSQNRKTKFGSLSWEG
IHLGYENDLSTYKLLRLEDKAIVTTKHVQFDESTFPHCAALHRSHNAYGINKLPAFTSEEPLPYSEEQDLDRERRQIDKE
KQAEMQDILGRLASPERASSETHNEEAEGAQATATEGASVPAPAGPRRLILRPPQHPTLVVGDISTDNIRNYKRRTAFIA
TASPPEPKNHNQAMSGPDSKEWKEAESKEVDNMIQHEVWIQRRRATDDSPIPATWAYRKKLGDKNQVIEHKARICAQGFR
QTYGLNFLAKYAPTGRPASLRMLISFAVDNDLAVHQLDVRSAFLTCPLDDKVTLLPPPGFDCPPDTVLELKKAIYGLRQA
PLVWYKRLSTYLKTLGFSISQSDPCVFWRVGVAHREDMWIFAHVDDLVIISKRPEHFKKEMEAEFSIKYPGEAVFLLGMN
IDRSEHGIAINQTQYIERKLVQFGFDSLHPATCPLNPKEYLRKATAAEVEELHNMGVSYRALVGSLNYLSVLTRPDISYA
VSTLSQYLNRPGIRHYYAAVQVFRYLLGTKHLGLIFHKNTLAPLVAYVDADWGNCPDTRRSTTGFVAMSGNHLITWKSSK
QPTISLSTSEAEYKALSDLGRELAWLASLVKEIRVNESHAAITVKVDNRGAIDMAKSEISQNGFRTKHMDIRLHFVRELL
DVGLITLAYVSSAANAADFLTKPIGRCPLKRSLALIGMLQASQSALTLLTHSTG
>Copia-1_DWil#LTR/Copia 127-3997 via tfasty with Copia-1_DY, 1 frameshift. [Drosophila willistoni]
MSSFYQTEKLEEGNYDSWSVQMRSVLIHAELWNSIGMTRPTEANAVAAWDAQNQKALATITLSVRPSQLVYLKNCATAKE
AWDKLKETYEPSGPVRRVSLYKKLLGLQLKEDKMSDYLNMFFSTKDKLAEVNIKLEDELAVIILLSSLPKEYENFVIAME
TRDSLPSLDSLRIKLLEEGDRRSNERMSNPEEQRAYQANVRKNPIRKKRSLVDIECYSCGQRGHYKRDCPKFQEKPKENR
QSQHRSYTILAAAQAGNLDASSWCVDSGATAHLCGRRSMFANYVAHEEDVVLANNHVIKAVGRGDVLVQTGFCELKLENV
LHLPGLETNFMSVDRAVDRRCTVTFDKNSATVRQDDEMVLIAERQGKLFVFKETGNRCFGAKQISAEDWHYRYGHLNYSS
LMNIVKRRMVTGMENVDFSEKMPCVTCMRSKIHTQPFPSASEHRAQHLLELVHTDVCGPFKQLLGGSSYFLTFIDDMSRR
IFAYCLKSKDEVFEKFVEFKEMAERQTGQKLRAIRSDNGREFINRRFDRYLKDPGIVRQLTVPYSPQQNGVAERANRTLV
EMARCLLVHADMQEFLWAEAIMTACYIRNRPPTAALVGMTPYEAWTGRKPNVQGMHIFGSIAVALDKTRRSKFQAKGREY
RLVGYSLVSKAYRLYDKEKREVVEKRDVMFKDPNDVVSIVESPGPAQTVTGLEMRWDESSKDDLENEEFVSAEDFEDESS
GQSDDESCQAEEQEPEQEIRQEGQIGPGRPRLNRTGKPGRPKKIYNRVNKLHVKELDLPQTFDDAMQGKQSSFWKTAMDK
EYEALLANKTWTLADLPKGQKAIGSKWVYTIKRSGDGSVERYKSRLVAKGCSQIYGVDYTETFSPVCRYETIRLVLAIAA
ELKLYLHQMDVCTAYLNSDLDEVVYMRQPQGYVDKTNSQQVLRLNKAIYGLKQAGRKWNAKLNGALCDLGFTSSKNEPCL
YQQDIKGRLCLVLIYVDDLLIACQKMDDMIAIKAKIAMKFECVDKGPLREFLGMQVDRNDDTGSIMMNQAQYIKGMLQRH
SMEVCRAVATPLDAGFQVACSDEKCVIQDVTMYQSAIGELMWLALTSRPDIYHSVIKLAQRNKEPHSEHVAAVKHVMRYL
AATKDLKLHYRSCGDALTGYADADWGGDVSNRKSYTGYVFFLAGGPISWKSEKQCSVALSSTEAEYMAMSSAAKEALHLR
RLLIEIGCGDAGTSTKLFGYNLSAQSLAKNPVFHARSKHIDIRHHFVREVVTRGEIDLDYISTKDMVADILTKNLSKQKH
NHCVKLLNLN
>Copia45-PTR#LTR/Copia 153-4190 via tfasty with ATCopia31_1-4050, 4 stopcodons. [Populus trichocarpa]
MASENNYVQPAIPRFDGHYDHWSMLMENFLRSKEYWSLVEQGINEPTVGSVLTEAQTKILEDHKLKDLKAKNYLFQAIDR
GILEIILHKNTSKQIWDSMKKKYxGSTRVKRAQLQTLRKEFEILHMNTGESVDGYFSRTLAIANRMxIHGDKMEDVTIIE
KILRSMSAKFNYVVCSIEESHNIKELSIDELQSSLLLHEQRMVSIIPEEQVLKVSMNGGVPSRGYGRGRSWGRGGTGRGG
RGRGYDQKPFDKSxVQCYNCHRYGHYQYECTDKEEKVNLVEAEAEEEMLLMAFLEEEESKSDKWYLDSGCSNHMCGNKEL
FSCLNENYKDTVKLGNGMFITVMGKGNVRFYAKDNTVQTISSVFYIPELKSNLISMGQLQEKGYTIIITAGCCKIHHPEK
GVIAKARMTSNRMFPLYMQDQIQTCFSTKMHDSTWLWHFRYGHLNFDGLKALQEKNMVTGLPKITCPTELCEECVVGKQP
RDSFPKGKAWRAEQTLHLVHSNICGPINPTSNGNKRYFISFINDCSRKTWVYFLQDKSEAFTVFKKFKAHSEKECGNPIK
ILRTDRGGEFTSHEFANFCEMHGIQRQLTAAYSPQQNGVAERRNRTIMNMVRSMLLKGKMPKSFWPEAVKWSVHILNRCP
TFAVKNITPTEAWCGSKPMVDHFRIFGCIAYAHVPDAKRTKLDDKAVKCVFLGVSEESKAYKLYNPITRNIVISRDVQFD
EENTxDWNKTDANLFQDSDLYEDASYGTEEGFIGDRKIESHIQPPECEIHTEEQLQVPIPHEGTIVPHGEGTSNIPQRQR
TAPAWMNDYVNGNEFSDEDTFAQFALFAGSDPIKFEDAVKEDKWRRAMDTEIHAINKNNTWELVDLPRGQKTIGVKWVYK
TKLNENGEIDKHKARLVVKGYKQQHGIDYDKVFAPVVRHDTIRLVISLAAQHTWPIFQMDVKSAFLNGDLEEQVYVDQPS
GYVKQGYEEQVYKLNKALYGLKQAPRAWYSRIDAFFTKAGFRKCPHEHTLFVKTAGGGKFLFVCLYVDNLIYTGNDGILL
QEFKDSMKAEFEMTDLGMMRYFLGIEVMQSTTGIFITQKKYAKEILERFHYQNCNPVKNPIEPGLKLHKDLDGQRIDSTY
YKQMVGSLMYLTATRPDVMCAVSLLSRYMESPTSLHSQAAKRVFRYLQGTIDFGIHYKKREASRLIGYADSNYAGDLDDR
RSTSGSVFMMNSGAVSWSSRKQQVVTLSTTEAEFIAAATSACQAIWLRRILDDLHVQQHDPTIIHCDSSLTIKLSKNPVL
HGRSKHIDVRYHFLRDLSNEGTIELVYCRSEDQIADIMTKALKLDAFEKLRNLLGMCSFQVLEQGN
>Copia29-PTR#LTR/Copia 44-4198 (1 stopcodon) [Populus trichocarpa]
MASSSSSNSTTPPTIPTLSNLPFTMTIKLHSSNYPVWKAQVVPYFCGHDLYGYLDGTISIPPKELNISDSTSGTSQTIPN
PLYHQWLRQDSLILATINSSLTEDVLTQVMSYTTSREVWLALENNFSSLSRAKVIQIRTQLANAKKGAMTANEFFLSVKR
MADELALAGQPLPNDDIITYILAGLGQEYDSLASTISSRRDPVSLEELFSLLLICESRINHNNQPLLPSANLVTTSPQQF
HRQTGTVQHSNRYRGHYRSRGRGGRSHFHDSTHSSSLICQVCLKPGHSARKCYHRFDLSYQAPPHSKNQPQALLAAHYLQ
PYKEWHPDTGATHHLTNDVNNIQFSHANHDTQDHVQVANGAGLKIVRSGTSTLSSPSKSFTLNQILLVPDIQKNLLSVHR
FCLDNNVFFEFHASFFIVKDYSGNTLHRGPLSNGLYNFSASLAHLQPQAFSSVRVSSQIWHRRLGHASFPVIHQAISLPS
PNKNRPICSDCQLAKSHAMPFIKMHVAVSQPLELIYSDVWGPASTLSTSGARYYISFLDDATKFLWLFPLKLKSDAYQTF
LSFxTAVERQFGSKIKAFQSDWGGEYRSLNRYLHNQGINHRITCPYTHQQAGAIERRHRQIVEIGLALLAHSKLPQKFWE
DAFLTATFIINRLPTPILNHKSPYEMVHHQKPDYNFLRTFGCACWPYLRPYNQHKLDFRSRNCIFIGYSIGHRGYKCLDV
STGRIFVSRHVVFDENLFPYTALNSLSPPSPTPSVTLPSNLNLCSAGYSFSTGATPQSTASSTLHVASPSGPQTDHGDHL
ISPTLTFTEPPHTDPPPHIPLPSASAPPLQNLHPMTTRSKNNIHKPKLPPDFHVKYPIPKALLSAIQTPDTEPTCYTEAV
KYPHWRTTMNTEFDALLQNGTWNLVPKPPTANLVGCKWVYRIKRKANGDIDRFKARLVAKGFHQQEGVDFSETFSPVVKP
TTVRLVLSLAVSRGWPLRQIDIQNAFLHGHLNEDVYMAQPPGFSHSQFPNHVCKLEKSLYGLRQAPRAWFSRLTDKLKSI
GFLGSQADHSLFVYHHNSILLYFLIYVDDIIITGSDIGSINQVITLLQGDFAVKDMGELSYFLNIEAIRTDDGLYLSQRR
YILDLLMRSKMDRAKPCLTPTSTSLPLSKFTSITFHDPSLYGSIVGGLQYLSFTRPDIAFAIHKVSKFMHNTMDMHWAAI
KRILRYLKHTISHSLLIQPAANVTLQTFSDADWASDPDDRRSVGAYCVYLGNNLISWSCKQQQTVARSSTESEYKALANA
AAELQWIKSVLNDLGVPSVHSPILWCDNIGATYLTSNPIFHARTKHIEIDFHYVRDQVMSGQLIVRFISSKDQYADALTK
PLPSVRFHTLRDNLRVRSLPFRLQG
>Copia50-PTR#LTR/Copia 35-4273 (1 stopcodon) [Populus trichocarpa]
MAGVEGDQSKTLAVVKPTTRGASIPIHYPMLSETNYGIWAVKMKIILRSLGVWSVIEGADTDDDKDQGAMVAISQAVPDD
VMMAIAEKQTAKEAWDALREMRIGEDRVKKARVQVLKRQLYKVHMQDSETVNEYSMKLTALVGEIRSLGAKLEESEVVEK
LFSSVPDRFLQIIGTIEQFGDVDTMSVSEAIGRLRTFEEGLKGRSHTESTGEQLLFTQAEREARTPKAKKYESFSNNKRG
GRHWRGHGSGRGYGGGRGNGERTNEDRKPRNFDKSKVKCFNCNEFGHFAKDCSKPNRRERANFVTTQTDDEPALLMAETC
VISHSIQNEHVLLHEDKVVPKIKGTREKAWYLDTGASNHMTGCIEKFAEIDTTITGSVKFGDGSTVKIQGRGSVLLEDFT
GEHRILTNVYYIPMLKSNIISLGQLDENGCKVVIEGGVMTILDRLQRLLAKVKRSSNRLYVLNIAPALPECFLVRSKEEA
WRWHARYGHVNFHALKSLSQKQMVHGLPIIEHEDRICDGCLIGKQQRKPFPAESNFRAEYPLELWHIDLCGPITPTTNGG
KRYFMLIVDDCTRFMWQVLISSKAEAFESFKRIKAAAEMEKGCKLKAFRSDRGGEFTSNEFKGFCELNDIKHYLTAPYSP
QQNGVVERRNQTVVGMARSLLKSKSVPGEFxGEAVSTAIYLLNRAPTKSLVDKTPYEAYYNRKPRVEHLRIFGCIAHVKN
VTPHLPKLADRSKPMVFIGYDLNTKGYRMFDPKTKQVVVTRDAVFDEEKKWDWTDSSATESKPAKDIFTVLYFPVAVSSD
AAHQRIEEEMLYPNMASPQPGFYQSGEPENTSAGSNRADGFGSGNAQTPVSFPVEQRASEFIHPEASEVGPRGKRDLNSL
YDKTIPTELDYSGLCLLGEEEPTSYEEARTDSAWRKAMEEEISSIQENATWRLVALPENQKPIGLKWVFKLKKDTQGRII
KHKARLVAKGYVQKHGIDFDEVFAPVARLETVRLLISIAAQKGWQVHHMDVKSAFLNGELEEDVYVLQPPGFEIKGEEYK
VLKLYKALYGLRQTPRAWNSKLDKSLKALGFERCLLEHAMYTRKEGNLTVGVYVDDLIITGGCIRDIDKFKSQMKGLFRM
SDLGLLSYYLGIEVCQTPTRITLKQSGFAKKVLEKCGMKDCNSTQIPMEPRLKLNKDSLEPPVDVTLYRSIVGSLRYLLH
TRPDLAFAVGMVSRFMEKPTLEHMAAVKHILRYVKGTLNFGFVYEKKEGDLELIGFSDSDLAGDNNDRKSTSGLIFFLGA
NPISWCSQKQKVVALSSCEAEYIAGCAAACQGVWLSRLLGELLKAEPKKVVLKMDNQSAIALTKNSVHHERSKHIDTRFH
YIRDCVKSGLVEVQHVRTEDQLADILTKSLGRIKFQEMRGKIGVLDINKEQQA
>Copia-1_CDC#LTR/Copia 5-4349 via tfasty with TDH5, 63.8% SW:1878, 1 frameshift. [Candida dubliniensis]
MSLYNIFTGLTIPSEYILLSKANFTRWRKNFITIAEGVSENFGNYVKDVPLAAGASANNLQFNKQVDLLLQLSVDKEILR
EARTLGSMGKALYLEIVEEYSQMFTIDKVQVITSLWDKLLDLLVDIKKRLVTQKEFFQFWNLLTADEHEGILPFVWLHLS
KSNFNLKYLEGFDPSLTVTGIKRFLTLHPEVNQTSGVLSLPVNYINNTTLSTIQITDANVEAKFRYQCFNCFGLGHTSSK
CALPRRGSIKIPNLEKKLDYYRQKKVFNRRRGGTNADESRIAETVSDSLSNSTKFTSTEANKWSNNQGSKNANVIIVLSV
ESLTNPTSASNFIIDTGASVNLCNDVSLLHDYTHFSEPHSVVAANGESLKVFGHGTLKFNHNSVEVEILYVGFAPNVAVN
LLNPKSLIRGPQDSITLSHEGVVHSTLGKIGTFGDTSNCVMSPIVNPMSAAICAVLNRDQVATLHHSFGHPNATSFKKML
DLAGHVAKTADIKSPCDSCLQTKNFQLFPKASDGPHTKTPLQIIHLDVAGPFGGPAVDLSKVFLVIVDDFSRHKWVFPLQ
SKSDATEVIINWIRHWERYFAGRGEYKVSSIRSDNGGEFLNQDMSLFCLKQGIRHERTIPYNSHQNGKAERAIRSIMDKL
RTLLCQSGLPSTFWCYSTIMAAHLLNITPSEVLNYQTSYEKWYGSAPKYSKLHPFGSTAYAHVPTTYRSKLQPNGVKCIF
LGYPQTQSGYLLYDIQTKTIVVAKDVKFVDSEFLASSIDFSEINATKLTIPGVTRSSTTSETFVPSRTSQNFPTEPTAVV
TSDEIDIIDNPSPHQSPEHSPVLTTVSSTPSSPSLPPPPIVQEGSEYEYSSDVSTLLSSNSTVSDNLDLVIDGFGMMVDK
SICGGDNTYVVQNLEVNEHSNKVYAVTKAHKKYKIDNVQIDSSASGCFTEYKWKLFYNQTTNEQGIPNTFKQAMQTQEKD
NWLEAMSAEMAAHQTNQTWIEVPRPTNKQILTCRWVFSKKPGNKFKARLVAHGHQQLKNQEFKETFSPVIRTESIKILLA
VSALTNKIVHAMDVNNAFLNGILDSEVFMTQAPGFESENNTVYKLVKSIYGLREAPAVWNRVLSDVLVKDGFKRVESEIS
LYLKKGIMVGVYVDDILISAETEGEIDKVKLLLKSNFRMKDMKGITKFIGMNIKQSPLGIEISLSDYIEKMLEDFGMTEC
NTVRTPTMSGLDLETIDAEPKLCDATEYRSLVGKLIFSANVCRFDTAYITGVLARHFHAPEERHYKAAKHVLRYLKGTKD
FALSYNNHEGIQVFCDADWASTSRDRKSLTGYLVKLGGSAISWSSKKQHSVSLSTTESEFYAMCSVAKEIVWILLVLDPM
DLAIELPITVYSDNQSAISLASHPTLHARTKHISIRCHYIRDLIASGIIVFRHISTVEMQADLLTKGLEHVKFTRLLNKC
GLKKSSLH
>Copia-1_CCi#LTR/Copia 300-5033 [Coprinopsis cinerea]
MSSTTVTTDNPLSATTISQWKRVCINKALEFAAYDILTGEETAPTGSGQMKARQHYQERRSKMAGYLRSTLDHAQTETLL
GDVDILDVPTIWTTLLTAYEPKDSGSRTSAIQELMTLRKQEDETYADYGARCVAAGQQLINRLPSGPNYVKETTASGSFF
TSQATGATPVTAETVVTGSTFDKGYSAVDLVNDFAAAMMTVGLIAEEDKVLRHTLAHLKSTTASDILEHLRRADTLDKNT
ALAEASAASALAASKKAAKKPKAKFNCSVHGPNKSHNDKDCRAQQQKAQIAEEDDETPPAIVKAQMAQVAHLASPPRIRS
LNTNADESWNTDSGATSHMTPHRRWIRNMVPCRIPVELANKHVVWAVGKGSVVFSPVVDGKPAESVIFQNVLYVPALQNN
LFSILTVVTKSRMRVVIEGNSLEFSRDNKVLFTASIKGTIGTLNGTTLAYNEQAYIARVDKHTLHCRLGHIGKGRLDTLI
NKELATGILVKPNTEVHNVCEHCQDGKQHRDPFPTHSNNRSPELLGRIHSDLHGPLTRTTAGHKYWITFIDDYSRYKRVY
LLKSKDEAFEKFKIFVAEVERKHGRKVKELRDDKGGEYIGKEFNAWCEKLGITRQHTVKGTPQQNGVSERFNRTAAEGVV
AMLCQANLPSSFWSLALLYYVDILNMTPSASVSNTTSYEVWEGRKPDLSMIRTFGCRAYVNIQRKDRRNLDSHTTRCIFV
GFEPGYKGWKCFDPQSKKFIISRDIVFDETLFPGLSTKSTTVTVKPVGIRDIWPYDDDDEWDTAPHGPGAPPDPPAPPAG
FRSTGDAPSTTTHESDSDSDDDDTPPYTPKPRVKKEHSGTDTPQVKEELVTPSTPTAKPPVARHAPYHREEEASPTPQGR
SQPPVPPSSPEPLVENPAPLPAPNFGQGRATKPKPPPQPSQNPRPIRSTARVTDYYTLAGHSRRGTAPAPRRTAEENGHP
PNQDQGGDQVVDQGGAREDNLPPITADDINEEDEPDFHSAFKATPVLDSILHVYGMSGEYLTMAEACEMALEMVLDKVKE
KALGAATRPEDSPRNWKEAMARPDRDKWISAARAEIDALIANGTWELVQLPQGRKAIGSRWVFLIKRKSDGTIDRYKARL
VAKGFAQAPGIDYDQVFAPTSRLATIRAILAQAAMNGEFIESIDISNAYLNGEIEDEYEVYMVQPEGFEVPNQNGGRWVC
RLKKGLYGLKQSGRLWYEKLAEELERLGFKQLKSDPSVYIWELDGIRVTLPVFVDDITIISKDQKKIQWVKDALAKVFKL
KDLGPTSYLLGIKVDYDREKRTLQLSQKQYIQDMLVRFRLDAANTVKTPMNPSVRLSKDQCPKTEEEREEMRNIPYMNAV
GALMYLAIGTRPDIAFAVAKLAQFNSNPGMTHWTAVKHVFRYLKGTMDLKLTYRMDNNPQLASELFHTFSDADYAGCLDT
RRSTSGFVIKMGTGAISWSAKKQATVANSSTEAEYVSASSAGREIIWLRNLLREIGFSLDKPSPMMVDNQSAIKVLRNPE
HHSKMKHIDIKMHWIRQEIKRREIEIHFCPTKDMVADILTKPLHREDVERHRIALGLV
>Copia-1_PTc#LTR/Copia 58-5964 63.9% sim to Copia7_TP, SW:1596, [Phaeodactylum tricornutum]
MRRPRKVTPAVPAPAAATDSPADAASASKEDEEFGGFDSSDGEEPSGTAPPSPASSDDEGDGKKTAKPLARSKNTSDEVS
VIEKSVIDAEPHLSKDSDGLDSVPRQDRVERKALMVVLRDVICVPLSVAAAMLNNGIKSSDDFRLLTKEDINDLCMRLKM
GSMHTKRILVFAKWMHHAPNSVDVAKEFTASVLRFEMMTRAAASYDNVTTTAAKAEKSATSLLPEPFDGSQKKWLTFRYG
FEAWAGASGSTFTACIAHHSDRYSKADPTGPHTSPRDVSDLFALSPVVNITRNATIFYTLMSLTSAGDAWGLVEPHEHTK
DGRSAWISLCAFYEGTSQVGLTTEQARATVMESVYTGLSKQFSFTKYVARHISANNALLRNKEGYSDAQKTNFFLKGITD
PALLPYKATAEARLDDWNFNRVVNYMRTSATKLSSKDRSDSRNVRQTKTTGRATGNQRGNDNKRRGSSNRPSNKGAEKPS
RPHKHVLPPELWEALTPAIRESILSAKRSIAPPGREAKRAKSSDTDNSSSTVESYSQLPSSKKPIRKHTCEDHVQVDSST
PETLLRDAPTDISPHVTTKKVTFGAGVLFGRYANRVSLNRMVRSGSHFDQAPWRKSDFRLNDATLVRIRQNRSRGTKTPT
NYGEAVIDTGADTVCVGAGYSVLSYTGRSVSLRGFHDDGETFERIPVVTAATAYDYDDGTTVILIFHEALNLGPTQTTSL
INLNQIRHAGHQTDDIPKFLSQGKSLHGIETLDGDYIPFELKGRASLLYSRVPTQHELDNCQHIDLTCDQPWDPNSKDWE
ENEAKYTRHDRSRRACYTDSVPVDILPDWPPLPVSPGSVVPDFHNRVMNPRDIVREIKYATIGASISSPRVLDVDRDKLR
RILGHVPMEVVERTLTATTQLAERTGEMPLHRRYKTKFEQLRYRRLKCTLYSDTFKSSIKSSRGHTHTQGFVCGDSYFIY
HYLMKAESAADQGLAEFIHNIGIPAQLHTDNAKVETLSKWKKLTSSHWIKTTVTEPYSPWQNRCEHEFGAARIHTRLVLE
TTKCPEQLWDYALAYVIFVRNHTARKALAWITPITAMTGDTHDISEILVFEFFEPVQYFDNPDVKFPQNKAKVGRWLGIA
TNVGQALCYHILTDKGTVITRSTVTPLQNLDSSALQTALATFDATIREIYQPSDFALGNKIKAPAFRRDEAMKVARRSDD
PGDGNTRNRHVLYDLNEGDDHIQLDPGLTVDDFFENDSPDQDPTSLIIGTDVLLTSGAVQRQGRVTKRDRDGTPVPNDDP
GNFVVEFDDGTEEVHGYQALLDAVYKQVDDDGNEWYTFDDIVDHQKRPRGGRGRTRGWFLRVKWANGEFTWEPLTSLKES
NPYPVAKYAADHDLLSEHAFSYWAPTVLKKADRWIRAAKTRKKKNRYKYGIEVPRNVPHAYELDKQNGNHLWRDAIRKEM
DTLESMKTFTIKDKGERAPSDYKRIPMWIIFDVKMDFRRKARLVAGGHVTDPPDEDTYSSVASRESVRLGFLLASLNNLD
LVSVDIGNAYVNADCREKVFSIAGPEFGEHEGKVVLIAKALYGLKSSGAAWHSHLAQNLRFLGFVSSKADPDMWFRKAQR
LDKTEYYEYIISYVDDLTIVSADTKAILKALENIPYTLKGGSAPRTFLGATTGVHTFNDGTKAWYMSAKQYLTNAILNIE
QTLGEKLPSSSRIVTPLPHGYHPELDTSGYLTDDRTNYYMSLIGILLWTSELGRIDITQEVGLMSRFNARPRIGHYNAVL
RMFGYLKRHLNSKLVCDPHTRDFSHINFVNPSWKEQYPDAQEELPPDMPPPLGRAVQVSVFVDAAHADCHVTRRSTTGIL
AFINGTPIRWYSKRQNTVEASTYGSEFVAMRIASEMIITLRYNLRVLGIPIDGPANVFCDNMSVVTSATIPSSVLKKKHN
AISYHKVRESIASGAMRIAHEPTGSNLADTLTKCLPGPQHKFLVRHILY
>Copia-2_LBS#LTR/Copia 188-4563  [Laccaria bicolor]
MSTSSSTSIKKLTHGNFHAWEPLVTAELQRLGVWRMCTGDEAESLVKPTPMSLPETATVSERISAQRNHADALQAYEAAC
HRNDQAIGMIKTHIEPSQFEGIDKLGTAKEVWEKLVLRHKDTHTGLSAFYTKVGILEKKYADGEDMHAHLDFLTMENRKL
DKKAFDDEFLAQIMLMSLPRDSTWETVVVVLLQSASDTTPLSTTVVSTKLMQEYRRITGGEQADSALAARQAKASSSKAK
SKKQCGYCKFLGHGELDCRKKKRDLENGTTEGKDSGKKDRQKKLSTANVAQVTATSEPEQAAENIASVYAEFPSDDNDDD
VHVFIATEVVALLSHQSHLETYIDSGCSRHLTPRRELFIDNTFTKLEKPIKVHLGDTSVIPAVGRGTIHYLMETPLGVVP
ALIPNALWVPELAASLLSVACFTDHGKHDILFDNDDCFIRSKPSGKCVASAHKTSGSLYRLIARPMTSKEYANAAITSRH
LDINLLHRRLGHLGYDNVKQLVDKGMVDGVTSVGGRIEFCEACVHGKQHRLPFPPSKKRARRKLDLIHSDVCGPFPNSIG
GKRYFVTFIDDCTYKGWIYFMAKKSEVYTMFRKFKLLVETATGQKIKVFRSDGGGEFTSFEFEGYLESCGIFHEKTTPYT
PEQNGVAEIMNRTIVERGRCMLFEGNLSSGFWTYAFECSMYLSNRSPVSRLPDSTPEEAWSETKPVITSFRPFGCPAYAH
IPKAKRTKLAWKTRKCIMVGYEVGTKAYRLWDLKTRSIVISRDVIFDERINPPAVPAPPVDLSEIVWDGELTGDVQGLTQ
VGDAWDKADVESPPSAPVTNTQPIEHLIDEEENQLQDLDPLPNPLPVEPPHQEHPLPLPDLPAQPRRHRTELELLGDPPI
IEGPRPRRLPERYRADSPPPEAEVPLDNGDADDDAFAQIAFVFAASATSTGYTDPMTLTEAMGSPDADSWQQAIDEEVKS
LQAMGTFVIVEKLPPGQKAVSSKLVFRVKRDNIGAIERFKARMVAKGYSQIPGMDFDETFAPVVKLTSIRVLCALAVTLK
LHFHHLDVDTAFLNGILKEEIYMRLPQGVGPLSGKIARLLRSIYGLKQASRVWNELLDHELAKLNFRRINADYCIYILQE
GDFIVFLAVYVDDMGLLCNDLDFMQKIKDRISKIFKIKDLGSISQLLGVAIDYDHEAGILQLSQSRYIQQSLERYGFNDG
RTHPTPLSSGAKISKSDCPSTPSEVEFMQNFPYQSLLGTLMYSMLGTRGDIAFAVGALSKVASNPGKTHWDEAVHVLRYL
GGTCDYCLVFDRKKAGEMTSFILGYSDSDWAGDLDTRRSTGGFVFLACGAAICWSSKLQNTPALSSTEAEYMAFTCASQE
VIWLRQLLEQLGFKQDKPTLLLGDNQGAIALSKNPGNHPHTKHIQLRYHFIRFAVEDGQILLDYVPTKDMVADGLTKGLT
GEKHMRFVSMLGLKPRMSG
>Copia-2_HAE#LTR/Copia 5-4102  [Hyaloperonospora arabidopsidis]
MSPTTFEKVDKFDGTNYPLWSFKMKMYLRSRGLWGQVDGSAPLDLSLMEQAHAAIVLSLTDSQVLHVVATTTAVEAWAVL
RGMNESRDMASRMWLKEKFATFRFTTSTMEKHFEELEALVLQMGSAGCRPDEDDLCATLLRSLPSSFDGLVQAFRMSVGK
FTYGDVMSRVLAEDIRQKEQGRIEQETAMLAGRNKQVIKKNGFDKRAVTCYQCGKRGHFKRDCPNAGNDAYESNVTFHAD
ITHGGVCREWVVDSGASNHMCASRDAFVEYRADHGGRTVSIAKSGATLRVLGTGIVLLRMNVGARTVCARLENTLHVENL
SRNLFSIPAILSKAMRVNMDSRGCKIVSNGAVVGSGRKRVNLIYLDVVGEAGCHIATDSIGAAPTQFVKPSRSTPVVSGD
LWHRRFGHASREAVKKALASNSIVVGDVSTKVCDVCELSKQARKPFPVHDDHGNASSDVVCSDVLGPVTPASRSGCTYAV
TFIMMKTRFVKVYPIMRKSDVLAKFIEFRQYMQTQTGVSVRAIRSDNGGEYASRDMKSYCVANNVRQEFTIPHNPQQNGM
AERANRTLVEMTRCMLKDSGLSKSLWAEALVTAAYVRNTISTTARPHTTPYKETFKRQFEYGRLRVFGSVCYAHVPKTKR
LKFDDSGVRCRMLGYLETSKGYRLLNLETGQILHSRSVTFDETASTSRVGERSDPVLKTESIDIESISLEPRQTTIEKPE
HGEHQLQVLARPDERSIVQAQDPSGGAMTPVQYPPYDCTDIVPTDLEESMSPRSAGRLAITSVPSGTPDRDGMNQRRVRP
ARKKRGVVRYEDEFNGMRRGEFNLDDYEDEIDGLHCYSTVLDDERQSTYAGIMRSEMRQQWKSEMDAEMQSLAQHHTWDL
VNLPSGKKLIGSRWLFKVKRNADGSVNKFKARLVAQGFTQKYGIDFNETFAPVAKQSTVRTVLAIAAGKDLEAEQVDVDT
AFLFAPIDDELYIKQPDGFEDAEYPNKVCLLRKSLYGTKQAARQWNKTLDDFFRSKDFVRADADPCLYTRTNDSEYSAVV
VYVDDMIVVSNDSVGVRKIIKELKTKFSIKELGEPRFILGIEVTRDRSARTITLSQRGYILQLAERFRMMNAKPVYLPAD
ANSRLTRAKDDALYITNVPYRELVGSLMYIVTCTRPDIADAVGNVAKYCEQHTSEHWSAAKRILKFLMTTREIALVYDGK
KPGDLIGFADASWASDEDTRRSTTGYVFMLCGAAVSWRSQRQPTVAGSSTEAEYMGLYFATQEMVWLRRLLKDLKMLKDE
PTTVYQDNQGAIAIAKNPVFNSRTKHVDTKYHFSRERVEANELRVEYMPTGTMVADALTKSVARPKLEQFQYAVGLKPLN
RVSIKG
>Copia-2_Mad#LTR/Copia 212-4808 via tfasty with Copia33-PTR, 1 frameshift and 2 stopcodons. [Malus x domestica]
MVTADQLRIVQSPITGLISTISTSVTVKLDDSNYLTWSFQIKLLFESHGILGFVDGSRKCPPRFDTDATTEGIETDDYLV
WKMHDCALMQLIIATLSTTAMSCIIGSNSSHEMWVNLAERFSVVTKATIFQMKTELQNIQKGSDSVSVYLQKIKDARDHL
AAAGVIFDDDDIIILALKGLPAEFNTFRCVIRGRETGISLKDFRSQLLAEETTIGQSFESSPSFSAAMVASATTDKGKAL
VLDQDSSHSAEFGSSSGINDQSYKNNGGGFRSPSYNSGGQYYTNGSPSSNFGSTSQGSYHYGGYKGNNFRGKGRGRSYQS
GSRTYNPFPNPSPxTLGAPRPFQSHCPDHPSDIPTCQICNKKGHVAADCFQRHSTPVSASHSPIQCQICWKFGHSAIQCY
HRGNFAYQGRPPTPHLSAMHVQHHPSAPDDQFWVADTGATSHMTSDLANLELARPYQGNDTITTASGAGLPISHIGSSKL
HTSSHTLVLQNVFHVPKLSQPLLSIYQLCKDNRCRFICDDVSFWVQDKFTGKILLKGLCRAGYYPIPFHISPKLPSASSS
FHKCFLAQPVSTSLWHRRLGHPSNAITSAILHQHQLSASxASCKTVCTPCLEGKFTKLPFSFPTNKFVHPLAIIHSDVWG
PAPILSYEGFRYYVTFIDECTRFTWIFPLKYKSEVFTTFVKFHAFVCTQFSAKVKILQSDGGGEYISSQFQHFLTTNGIL
HHKSCPHTPEQNGLAERKHRHIVETALTLLQTAKLPNLFWFHACATAVYLINRLPCVILHMKSPYQLLYGHLPHIGHFKI
FGCACFPLLKPYNTSKLQPKTATCVFLGYAGDYKGFLCLNLIQNKMYISRHVLFDESTFPYEKFSVSVQSSPLVVSSPSF
HPSPSLPCITLTNQVTPSLHTHASSSHPTTSMHSASSTPKSLPASSASDSLAASSASDSLETLTSVPHMHTSLPPSVDIP
GTMPTQSPIHVDPDFQPDHLNVVLSLPLNVHPMVTRSKNGIVKPKAFSASIGSPSPVSEPKTFKAASKVVEWQTAMQEEI
DALHSQKTWSLVPLPCDKNLVRCKWVYRIKKNANGTVARYKARLVAKGYNQEEGVDYGETFSPVVKPTTIRLILALASQF
HWHLRQLDVKNAFLHGVLQEDVYMEQPPGFLSNQYPSNYVCKLHKSLYGLKQAPRAWNDRFTSFLPALGFQSSHADPSLF
VQSSPQGIVVLLLYVDDVILTGSSSQLIAQVIKALTAEFEMKDLGDLHYFLGLQISPTAEGLFVSQSKYISELVAKVDLQ
ACKPCATPCLPYHRLLKDDGKPYHSPDQYRSIVGALQYLTFTRPDIAFSVNQACQFMHNPMESHVIAVKQIIRYLKGTPD
YGIHFKPGPLSLLSYSDADWAGDPNDRRSTSGFIVFLGSNPISWSSKKQHTVSRSSTEAEYRALAITAAELSWIRQLLCD
LHIPLSHAPLIHCDNLSAIALSTNPVFHAKSKHIEIDYHFVRERVTRGDLHVHHVSSAGQFADIFTKGLSAPLFQHHCGN
LMLSSLKHEIEG
>Copia-3_ADe_yr#LTR/Copia 9123-10022  52% similar to DIRS-24_NV_yr. Whats it doing here? [Auricularia delicata]
MYTHVNASWRSLVFASTPSPSLRDAILSLYAAYESHFIAAKSVRTYLSGIAHSLEPFYPHVRASRSADLVRNTVAGCIKM
SSHHVTRKSLLSRHDLGRMFQKYGSSPSHDDLLFLAILFTGFNGLLRLGELVWPDSAAQQDFRKVITHASFAWDSAATPG
EPHSRHYSFLLPGHKGNRFFDGDTVVVTERADSANAVPIMRAYETSRSQLADTKFHPALFVRANGSVPTRSWFIRYLKDN
FPDDIRGHSIRSGGATDLALRGVPDNLIQRIGRWSSEAFQIYIRKNPALMPILAGVVPAP
>Copia-2_PPM#LTR/Copia 5-4199 via tfasty with Copia-7_CPu, 62.4% SW:2167, 1 frameshift and 1 stopcodon. [Postia placenta]
MSPTDTYEITLGSNESPVSRLPKLAEDGSNWVLFKAQFKATVSSKGLLRFLEGRNKIPIELTAPGVDSDADENYENALDI
WTGKHEAIHALLFQTIPETMKLRILSLPKASDAWNLVCKQYENQGEFVQMDILTRMHALTTENGSDPRPTLNELQRLCTE
YAAAGGSLDDAGYKAIILKCLPLSYRGVVRTILSSAHLIALATSVPTPGTSPSPPGTTSATPCSGLSPTALVEQIYAIAR
DEFALAGPVLANDSALVADSSNKCLNCGRAGHTKPNCWSKGGGKEGQGPRSKARREKAATDAHESAKAAIAELDNDGDVF
AFKAIDLPITDIHLRSATGNVPRLWDSGATRHLHPIRTDFANFRSIHPKPIRTADGRVFYTTGEGDVLLPTEYKGSKMKV
KLQDVLYTLSIPHSLISVSRATKAGFSVRFEPDGCHLIAPNRRTLSLIPAHQGLYSTSTDSSAQEGALSAEVMSVSLHEL
HCRMGHAYSPALLKMVRAGVVKGIRLSDESSVFCNSCMRAKHAHEPFPKQRSSPRATKYGERIHTDVWGKAPVATLGGKE
YYVLFLDDHSDEAIVHFLRRKSDTFGRYKAYRAWAKTQRSAEHAKELQCDRGGEYLSEEYKAYLEGEGTIRRLTVHDSPQ
QNGKAERLNRTLTEHARAMLIDASLPKFLWGEAVSHAVWLRNRTTTSNTPSATPHELATGNKPNLAGLPRFGATVWVRID
PATKLDVKSKRGRWVGFDLQSKGHRVYWPDKRTVGMERDVHFEPDVSVAAVDVPLEGEQLLHDQHPPAEPVSQHAPGTDV
VPVPESAIDGDANHDCDPPPHILPEPRAQRARKPSQWVKDLQSGTGTTGGRGAQKVPSSILEHGSLAADESSTYALAAMP
GDEPSHHEALSGPEREAWLDSMHEELARIESMGTYELVPPPPPGTNIVGSTxVLRKKRDENNNIAKFKSRLCAQGFSQVH
GVDYMDTAAPTARLESLRLVLALAAQNDWEIHQIDFKNAYLNGDLDETIYMRQPPRIQSARTRRRVWKLLKALYGLKQAG
LMWYEKVCELFAELGLTRSKHDYGVFFLFRIGDVIIIVIHVDDCTLVTSSKGLMIKLKSDLGSQYEIVDLGEARWLLGFE
IQCDRHTRTLTLSQAGYIATLLERFRMTDAYALSVPLDPHVNLFDVELTAKDRSEMATRPYARLVGSLMYTAIGTRPDVA
FTVSLLARFMSDPVPVHWDAAKRVLRYLKGTRDLRLTFSGSDEGLIGFTDADWCSLPHRHSISGYVFTFSGGAVSWRSRK
QPIILLSSTEAEYVAASEAGRELLWLRYLIGELTHPLQKATPLRCDNQSAIAIVDSGLLHARTKHIDIRFRFIQYVQDSG
AASITYIPTGDMIANILTKALPRSKIGKLVALLGLRLA
>Copia-2_GDe#LTR/Copia 280-4650 via tfasty with Copia-28_BG, 67.7% SW:2492, 3 frameshifts and 1 stopcodon. [Geomyces destructans]
MGEGNGGRNNLPENMKLRGEENYIQWKTAMEDLADANDLVHFVHPKGKAPPQVDEFDEKVDIEKLATWKSWKAGDASMKL
IIQTNVKKTPSQLLAGCKPAREMWVILQSQYEGTGTVLNFNAIETYTKIKYEDYANLEQFIIGFKKAIEKLANLEISPPD
AWHPILFIMALSDAWPIWAERQCSNTRSEATKLTLSALIEDITDEARKKDKKADGSAHYSGKPNQKGKPNSKPKDSAKGK
GGKMCKNCDNPNARHEPENCFITNKKLRHEWEQRTGKKFMPFKPSNSSSKSNKLKKAKNDNSSDEEDEDRQFGKNATTYI
CVQLNHSRSPIQNGTLFDTGAETHIASSIEEFNSGTYKTSLTLPSIDTASGITEPLGQGERTLQCATDDGGIHTLHLTKV
QYLPNCRMNIFGARKLLGRGELHITDKNLVVNKKGIPMFRFDENMMIIVASPRAYAFTATTHKNEKNPPHSIRLWHRRFG
HLGLANVQKTSKMVRGMAISNEEDLTPQEQEDEDLQLCDPCERGKAKKHIRKQAVTQNLQPFDEVHIDVVMITPEGIGKK
KYATIFTEKATTVRWAYFHRSKNEAYDALIKYQKMVNTQFGKIIKKxRMDGGKEYSPKKLTELAEELGQIVEMTTPYNPE
QDGTSERSIGIICERTRTAMIDMAIPQFLWPLILESIVLITNRTATSKLKGKTPYEALTDNLHPGQDNHPSVAHFRVLGC
KTYVQIPKEKRVTSAKVTERAEVGILVGYEGTHIFKIYVPTRRGSLENCIVRSSNVRFDEGGLITKPFPDEDEIESDNED
ASITLPHIARGEANYDRDLIQRVSKTQHEEHHSEIENESEISESENSPQELELHELDQYSEVDDEDIELMPTITARRTRK
VYIPKPEFNRVTRNQATTTATASYEAHSKSQNQNSSSAFIAAFTAGAHTSIYDDPNTIEEAKQQADWPEWQAAIQKEYRN
LKHKGTWKLMQRTQLPSHAKVLLILKTKRDKNGSIMKRKARWVAKGFRQKQGTDFDQTYAGVCKTTTWKLAIAIAAFFGL
EIEQVDVVGAFLNSDTDTEIFMDVPPDWEVNGSILENAPNWMCHLQKALYGLKQAPRLWQRELAKALHGLGFTTCASDYS
VYCNQKTGILIVTYVDDMLIIGKQITTIQGLKKELMQKFEIEDLGPASYSVGVRITRNREAGTISLCQDAYITKILHRYG
MENCKAVDTPVATGAAEVMIPFEGKASHAEIKLYGSKIGSLMYLAVQTRPDISYGVSVLSRFLTNPSPAHMKAGDRILHY
LKGKVLGIEYGMQGDTHLYGYCDSDYASDKANRKSVLGNAFFFAGGVISHTSKRQQTVAQSTTEAEYYALAKAVSEALWL
QQIMKQMMYTGNDIQATKIYGDNQGSLSLAENPKFHQRTKHIDVKHHFIREHIENGSIDLWYVETANMAADGLTKPLPAT
QHEKLIQQLQMKVITA
>Copia-2_Cfl#LTR/Copia 128-4231 via tfasty with Copia-14_SI, 79.4% SW:3525, 3 frameshifts and 1 stopcodon. [Camponotus floridanus]
MAQVARFESLNKENYDTWKMFMEALLVKNDLWQYVSGTSVKPEVIAGNAASENMARTWEQNDAKARSDIVLSISSTELKQ
IKGCVTAREVWLKLKDTYQSKGPARKAALLRQLTTLKMSGNSDVRAHLNQFFDIVDKINEIGVEIDADLLSTLLLLSLSN
EFENFRCAIEARDMLPTLETLRIKITEEADARKGIADSHLSNAMYAKKQYKKQQKRSKDVNENSSDSTFKYKCHKCKIVG
HKASDCKAQKKDSQTAQNATDTTMLTPEAFLAGTTETSKWCLDSEATSHFCYETCKFGVNMNAKREKLNLANKNSTQITG
EGTARLNTNIHGELRSIHLENTQLVPDLRMNLLSVAKITDHGYDVLFNKHRELVVDQDGNVKLIANKTNGLYIVEESVNE
IAVAEEISTGSTTQLKADWHRRFGHLNVKDLQAAIRKGRVEGIEPGNFINSNCDICPEGKMARNPFPIKSERSTKILDLV
HTDICGPMKVTSIGGAKYILQFIDDSSRWGQVYFLKSKSDVFQALQNFVITMENQTGRKIKIIQSDNGKKFVNATIDEFL
KQRGIIRRLTVPYCPQQNGVAERRNRTLVEMARCLLLQSGLPPSFWAEAVNTANYIRNRCPSKLLDGRTPFEVLSEKIPD
VSHFREFGQRVFVLCNKPGIGKLDSRGVTGIFVGYSDSSKGYRIxIPDKMKIIVSRDVKFLHTESPKENTYEDFYPGSVE
NSEEVDINKSHDHDMIDVILEPSENCQNETVEENIAEVPAERIEPVNGDAVEEPQENHDDLPHDAQEVIRRAPGRPKIVR
TGERGRPCKEFHYHHAEISETQSAHLSEIPMREAMSGLEADEWRLAMVKEIRSIIKNDTWKLVDRVDDATNHRTIIGTRM
VLKNKLSPDGSIQQRKARLVAQGFAQKPGVHFNETFAPVARMGSIRLMISSAARFCMNIHQLDVTTAFLNGYLEEDILVN
PPKELIELLQILADSDKDDVIRKKANQMLHELNTGNKVCKLKKALYGLRQAGRSWYQRLDKVLKECGANATNADPCLYHL
GQGENIVLIAVYVDDILIASRNKKEIDRISYFLSQQFKIKNLGEVNRCLGIEFNREGEKITLTQKGYICELLRRFGMTDC
NPVSTPFDSNVKLKKGAEPTPDDQVLPYRELVGSLTYLASSTRPDIAFSASYLGQFNNCFDETHWKAAKRVLRYLKGTMG
AGLVYGPDSNPLIGYTDSDWGNYHVDRRSHSGFLFVLSGCPITWDAKNQRTVALSSCEAEYMALTECTKEAIFLQRFLKE
LGFSDLSNVTIFGDNLGAIKLAENPVFYQRSKHIDVKYHYVRDALRNENLNIKHVSTIDMVADILTKGLPKRKHLECLKK
AGMHLSHCE
>Copia-1_RGl#LTR/Copia 73-4214 via tfasty with Copia-2_SL, 61.4% SW:1474, 3 frameshifts and 1 stopcodon. [Rhodotorula glutinis]
MPGNPATTTDASAISISRPTALPADSHLKGADNYAVWRVQLRGLVGNNAWRVMVGGVPKPDPSTTTVSKDAPYTYADxVR
LNNFAVTSIIISCSHSVIHHVAACDHVAHDYWIPPCDAFAPTDAQGALRLLSRFWSLSLPAASPEAFDTFAQEYKATLLA
LKTADVDLEMVYSSHLLAALPSSLATLQTTIAVSNRSSLPSIRLHPRAVRNEILRSATVSSSSTALLATRPAPSAPRAPR
PPPSPCPACQANHWLRECPRKAEYRRQQDKQRASANLAVNPGQDVKPPSASASYAQVAADGIEAWLGSTSVPSRVTQPTL
YSGATHSMCGDRQYFSSLRACCPEAVGGIAGSNSLKATGVGTITVRLDSGKVLTIGDVLFVEGISATLLSTSVLYRRSGI
STTFGDKATVARGNKVAATGTQVKDGLYILDGTLITPLTTTGACALLASAGSSAPLTVWHQRLAHLSWWAITALAKSQSV
SGLVLKEVEGSPPASPCNVCHASRASRLPFLDLASHATEPLELVHSDVLSIDTPSIGGRRYVVTFVDDYSRMLWVEPLAH
KSDVLEAFKRFKAAAEAEAGKPLRRFRSDNGGEYIGKAFQAFLAEHGIKHKPTTPHSPQSNGVAERVNQSIIEGVLSMLT
QAGAPKMLWAEALLAFTFIKNRSPHSALGGDVPLKLWRGKPARLDMVRTWGCRAWHTVTAKRGKLDAKAVPLVFVGYDSG
SAAYRLYDPIARRTIRSRDVRFVEDDFPLRAPAAAGTVNSTPIEPGLVITSETSPVVQAEPDKPASPSPSPPPAPQRQRV
VNVQPVTPPRQPVFERSPAPASQSPDEIDFLSDPLSSTLAEVGDIEALIAAAGDTGTDDPFELPTTDPRNHKEALRDKDS
GKWVQGELDEFSSLQDEYKVFHAIDAASMPKDAKVIGCRFVYRRKKDAHGRVTGHKVRLVAQGFSQRPGVDFRETFAPVA
KFTSIRVLLALAARHRYRVQQADVDKAYLHGQLEESLYMCVPEGIAGPDWTGKVLKLDRALYGLKQAGRVWNHRIHDSLA
QLGYRRSTSDACIYMQNEGGQWHYIALYIDELLFVSPSQAEIDRVKGGAQAEYGIKDLGDAQFILGIQILRRPDGSLFLS
QRAYLQDVLQRFNMSDCRPSPTPMVPNQQLVAAPAVHAPSPELRRRYLQAVGSLMYAMLGTRPDLAFAVGLLGRFARNPD
DAHWAAVERVLRYIEGTLDHGLQYRPEDSSITGFEAYSDSDWGADVNTSRSTMGYVFLLAGGAVSWSSRIQPRVTASSTE
AEYLGLSHSSKEAIFLRQLLEELGHPQTAIALSRDPQFHNRTRHLRLTEHLVCETVKQGLIRVEYIPTACMVANIFTKSL
PLPAFSAHRDSLGVRALVARG
>Copia-2_Cop#LTR/Copia 106-4876 via tfasty with Copia-104_AA, 57.3% SW:1038, 1 frameshift. [Coccidioides posadasii]
MDIDLESSSAPTPNPTSRNMSPAGHMEDASTNAGAHSQPAGITRRVGFLRGGIAGRQFRETTPRIERNFNIADKMVTDIT
GTTIRSIPMLQGEKNVNTWLNIVRLQLNHYGWGILYDAVVPEPTEASEDIRIKWRSAMTSFATWLSLSMEDDARDRISKH
YGGDIDDPALMIFYTKQLFLKPDKNTCIHAAENYFYTRQHDYGSVTQYLDVLLERYQGALRAPHPLHPSLAINKIIEGVR
AINENYADSVLSIVRNTNPSDITYEDMRNLVQEAKEYVEAPSGIYMAGQTKSKETAPNKQIVRKYAPQKGVSWDDHVKSL
CEKIPSKIGDNCGYCETPGHAIRQCPHLFTDKRYQGWKPKPHLWMRPRPKGRWHTNPEQKNQSQFKSQQPNSSEDAKDNT
GENHLIMGFENSFAGMAFGPGLVASVSERAVGPETWLVDTCCSHSICCNKAYFTSFDPTTDHWYRASNGEIISIKGSGIV
RVRCIVQDGIVNEIHIRAWYNPKLGTNLLSTNQLTEKLNLYFTEVDHTLRTRRDHKLVGYAKKSDGVTILETEPLHQQEK
AIQQTYATMKLTPELLHRRLGHCAFPTTRKAAKNQEIEIEGQDTFHCEACALGRSKRQISRTPQIRSTVPGRKIHIDLQT
IKPTSFQAFKYALIIVDDCTRFKWVILLKNKAEASRSLQEHVERLRNLLGFYVDTVRMDGGTEFSLFKKEFAPARGIECE
VTAPYTPEQNGVAERIGGYLVEISRVMILEAKLPQEVWDLALQTACYITNRIPPAGGGESPYELFWKKKPNLQHLRAYGC
IAYAHISPEDRANYNKAYKMKPRAQLGRLVGYEGENGHIYKIWIPETGKIIRTRDAKFNEDVDAIPDLPKKEDPKPKDRF
TEPFVIPSFPKQEAMGAAKQAATRLIPASTQEPTEARAQGANLIENPEIPIPFWMQEQMHGPRLQTITPSPQKTPSAPER
MVRFQEPVHETIEETPEPPYNGDSDNDSIEGQIHNEMFRDALEEPGQSAESTPTREPNLRLQWSRTLITARRVSSRTTKG
KSPRLYGDYASYLAADLLAYKVKVPRNYKEAITSEYASEWKSAMEKQIEKLEAANTWELVETDSIDPTAKILPGKWVFDL
KVNADGYVTSFRARWVICGNFQRPGLDFDETAASVVTESAIKLALIKIAVEDIHCEQVDIVTAYLHAILKRHKIYMSLPT
GTERKGFVCRLRQALYGLKQAGHLWQETFTKALMEIGLKPLKDTDPCVFIDEESGLLLIIYVDDALIAAPTKETVTDFKN
KLSDRFPIKSLGEPSRFLGCKIERDRTKRIIYLSQGSYVQKVLAKFYMSGSTIQTTPMAEGVRLTQEPEPSSVVAESIVN
WLQQLLGALNWLSIKSRPDITLAVNKLQQFATKPTLEHLGYSKRILRYLKGSPTLGLTLGGTPKPGIPELQVYVDASHQD
CKEGRSTEAYVLFYMGTPIAWSSKRQKIVAPSSTVAEFCALDSAVKEALWIQKLLQDLDLPAKAPIPIYTDSANAIALAH
KPTYTPATRWMDTRWFFVKELLKEERVKLYHIPGTENPADGLTKPLGKQKFKEFLQMLNLNNVDPTFTLA
>Copia-2_DYa#LTR/Copia 285-4476 via tfasty with Copia-1_DBi, 87.9% SW:5222, 1 frameshift. [Drosophila yakuba]
MDKGKRNIKPFNGEKYSIWKFRIRALLEENDLLDVIDKEQTEISEEVKWAERNAKGIIIEYLSDSFLKFANNDNTAKQIF
EKLDSIYERKSLASQLSLRKQLFSLKLKGDTQLVNHFHLFDDLITELVAAGAKLDEMDKVAHLLNTLSTNYEGVITAIET
LTESNLTLDFVKTRLLDHEIKLRGINKDTSAKVLQAIGNREHRENTFKNKAMKFMKKPFKNKPKLKCFHCKKLGHIKKDC
FLLKRQAGNQNIPDGNSVRERQAQMAAETRTRPERAFAFLMNSGVREKQTQKVATQRKCAVAFMVKLANYTEKPDEVNFI
LDSGASDHLVNDINLFSEYENLNVNVAIEIAKRGEFVYATAKGQVKLNNSGSNITLHNVLYCKEIPHNLLSVKKMIDAGM
SVEFNTDGIKVIKNGNLVFEGICEYNVPTVKFNLNSKLYTSVISNDVEYRLWHERLGHISVGKFLEIKRDGLFEDSELIK
NVIVNSSKLCEACINGKQSRLKFEKCKNKENIQRPLFVIHSDVCGPITPSTIDNKNYYVVFIDQYTHYTVTYLITYKSDV
FFVFKDFVAKSEAHFNLKMVNLYIDNGREYLSNEMREFCVEKGISYHLTVPHTPQLNGVAERMIRTITEKARSMINCTKL
NKSFWGEAVLTATYLINRSPSRALENMRKTPFEMWHKKKPVLKYLKIFGSTVYALNKVRKRKFDEKSIKTILVGYEPNGY
KLWNENSRKFMTARDVVVDEMNMKYVTSNENDSVKEHDCDSPIEENEELNFPLQENCESRDSKSNENDSVKEHDCDSPIE
ENEELNFPLQENCESTDSKSDENLNENSTCLENTDPVAETGDEIKENINQEEIRRSERIKGKPKLSYRFLEKCLMNTQMC
SNDIPNTYEEIKTRDDRILWEDAIKDELNSHFANNTWSLVQMPKEKNIVDCKWVFSIKQDENGNLLKYKARLVARGFTQE
YMMDYDETFAPVARISSFRYLLAFSNQYNLLIHQMDVKTAFLNGTLKDEIYMKIPKGLNQYDGNKVCKLNKAIYGLKQAA
RCWFEIFESALKSFGFRSLEVDRCIYILDEGDIHKNIYVLLYVDDIIISTSDSERMSKFKTYLLNKFQMTDLNEIRYFIG
IKIERESDQICLSQSAYIKNVLKKFNMEDCNPVGTPLPSKINYEALQVEESYDAPCRNLIGCLMYIMLCTRPDLSTSISI
LSRYTNYNNRELWQCLKRILRYLKGTVNLKISFKRNLNVNKILIGYVDSDWAGDETDRRSTTGYIFKMFENCSICWSTMK
QKSVAASSTEAEYMALFEGVREALWLKSLTNEMKLELNSPIVIFEDNQGCISIANNPTCHKRTKHIDIKYHFIREQIENK
LIFVEYLSTDSQLADILTKPLPTARFTALRDQLGLTE
>Copia-2_CPu#LTR/Copia 57-5477 77.5% sim to Copia-9_CPu, SW:5252, [Coniophora puteana]
MNSCPDPTASPTFIRLCETLLSTTRTPDNMSQHSFHSGNADGDEGIRPVDAETMDASASLPEYASNIHSQPYRVSFAQPS
TSASPHDTLHEPSADTTRNNSDLFGFGNRHPGGPTSLFGSNSHSSSLFDIGASAPRPNFFGLGPQAPRTESPTTRDGPSR
SLFNMSAPFVTHRRNVTPPALTNVLDARPLSRIDEDRDESRVLTPASLTRHRDVQPPQQQHVYAPEPSTLQPAYTRAPVA
STSQPAYTQAPVATYSSQPPRLQHPVSTYYPHGYPAGPPPVPPRPPPQGPPRQLPPHLPAPAPPPVYAPPAYYHAAAPAG
PAHHAPPAYYHAAAPSGPARHAVFLPKITGGKLELHHAAQIEQLDRSTGNWMTWDEDIRQHLVTNQYDARWLDGQVPWVD
ASIDAQYAHDWIRANDTILYFIRGKISSVDRQYISTHKWLADAYQVLRGRHEQLGPIAQVLLLRKLFSTNFTRDRRLATT
ARELSEMASRVMRMGPMTENRLFATGLMSVLSKEFPIISNELAHQLSSNHHHADFDARNILHRLDIEQSAIDAANSTTLG
ESILATTTKAQAGSRVVCRTCGGPHSSATCWGPGGAMEGRRREVLDARDKHRSSEDVKTTPKRAPIGRRFKAEGRIWIGD
DHSGRAYLIGDDPDASSSTAPPAEDSDFAGLASDTLQPAEVAEMDDADLQEYDAYFLSSEGDSLHTHVDWSKHSTAAEHA
LWMSNALNQSKPTVIDPSVVPFYMDSGASTHITSDAADFYSLSPIEARTIHGVGRAVVHARGIGTIRLSFGRGRHLDLHN
VLYVPQAAVRLISVSKLNAERNYTVVFGPDGCSVVNAAGVRILYGVVTSKNLYRLVGSTSALAHHTYFAPKVPSLSVWHR
RLGHANYQSVLDLARKRMATGMSIDLSVTPPKCEHCILGKQARSHVPKVREGTRANRRLGRVHVDLMEHPGTPSAHGNVY
IMDIIDDSTRFSWSIPLKSKDAAYAALQAWERARELETGLKTGTFISDNSELKRSDLKRWLEDRGTQQLFTAPHTSAQNG
LVERLHLSLMNKARTMRLACGLPVTRWDEFVLTANYLHVRTPARALDGKTPYEAWHGTKPDLSHLREIGARAFVLVQNHH
NPKVLARSVECILIGYSLDSKAYRCFNKATGKVGTSFHVRFIESHETGGDSFRPGVVLGDPALPPTDTTTGDVVPSLPPL
DPSPHVDATPDVDHSPPLQPFEDSGLRRSSRVSKPTEKQALADSLKYVTRLEDVKASINAFFVDWDLPVDEDNSDSDEHV
LYVDPTSIKEALARDDGPEWDKALKKEFASLKEQGVYVVIPREDVPPGRKIMKGRAVFKLKCDEDGTPVRHKARWVCRGF
EAVFGEDYFKTTSPTARLESFRILLHLAAALDLECEQVDVKTAYLYGRLEEDEACYMEQPKGFEEPGTEGMVWKVLKGLY
GLKQGGRVWNKTMHDAMISWGYTRLSCEHCIYVRREGSDITIAAVHVDDFCIAGSTQSSIDRLKMSMKTLWQISELGSSK
FCVGIAIARDRDLRTVSLLQTALIDRVLEQFGMANAKPVATLLEPNFQLARVPHATLDAARRAELAKIPYRSLVGSLNYL
AVGTRPDLAFACQFLSQFLDAYAEEHFAAAKRVLRYLIGTRDLQLVLGGRSSADLTGFTDSNYAACEETRRSVTGYCTSL
GSGVVSWSSRKQPIVTSSTCEAEYVATNAATKEIIWVRNVLTALGYTQLHPTPLFCDNQATIKISEDPSNFSRTKRIDVR
YHFIRERVDDGTIQLRYIPTSENIADIFTKSLPKPSFVALRRMLGLR
>Tad1-3_BG_gag#LINE/Tad1 1-1059  [Blumeria graminis]
HTENIHSSREPARPSPKTQPQRHRTDDRLFVRIPDGDKLRGLSAYXIQSHLKAKLGDEGRVLVNVQSTKTGFALCPKDGE
TSKLKEEISKVSIFDNVAVESASPWTSYRINNVPQTFGTINDELRYCLQPVTAAAMHEALSAAAGTAPVAILASRDNEEN
PDSSSTTWIARFPETHQRLPRVLFLFGCRTITKTLPRRYTAAQCNRCWLWHNTRTCASSLRCRLCGSGTHTENEHGNHCA
ATGEHTCPPRCVHCHGPHAADDAKCELKPKATGQPLNKAQVSAVRKVNADARLRRQAEAGCAKPLPQATQQRVVTSRHHL
NTSALPDQGQHRIHKKLFPRTPSMPFTSKRIRA
>Proto2-1_BM#LINE/Proto2 17-1009 Fragment. [Bombyx mori]
GTYATPVYACFLDLSKAFDLVSYDLLWKKLENIKLPTEINNILKFWYGNQINNVRWAGALSLPYRLECGVRQGGLSSPTL
FNLYMNELIGELSRTRIGCFIDGVCVNNISYADDMVLLSASICGLRQLVSLCEGYAKSHGLVYNCKKSEIMVFETRGGTH
DKIPPVVLNGTPLTRVYKFKYLGHVLTPDLKDDEDIERERRALSVRANMIARRFARCSLKVKVTLFRAYCTNFYTCSLWA
GYTQRSYNALRVQYNNAFRVLVVLPRFCSASGMFADAHIDCFYATMRKRCASLVNRVRASSNSILSMIASRLDCIYMGRC
GAISHGMLPQ
>Sm2_orf1#LINE/Penelope 329-2107 [Selaginella moellendorffii]
MQPTLSPATAPVATMPPRRSVVPPVTTSTSPMAVPTTNSLSPHAPAYTPMSTLACTSVLTTTTIHTPTPSTTSPPLFATT
PHTPPTFSISPPVPLTFSTTPPFSMASTLPTLFSSTTSIPPPFSSPAVPSSTPFSGLVDLFTVLQNSAGISATGNTLPQQ
LPPFLAPGNALTSSSTEGLGRLDEALSAILECSIKEFMNELKSLNQAHKAVKRLTQLRDKKQFPQDLRIRVPKLEVTSHG
QELLDTSIKAIHEQYLKDLLDSLLKAREAEAATLADLINHGLSQRFNDRMDDFVHCALQACGNAQREAVTHTLNARKHQL
IAEYQRATAIGAVAYGVEESKKENARKQREAAEDAARAKAETLPKEDTVKMLVQSCFDKMWKERERGIPRQHHEDAGRGT
RSQGKRQQRTDTSLHIREAGSSKTRKVSLPSGERDVTHGRQGNEQGRNVVTGTPPTHSDAPGFSSRGPLHRQSPTVLGSQ
PAMTGRGGQRQSRGNGRPPRSQPNWPSGRGRQTTPRPPPAAQQRQPTQNQKPPSPPRGQEMQPSQHH
>Proto2-1_CS1_gag#LINE/Proto2 396-1463 [Capitella sp. 1]
MTRTPSFLGEESAMKLIPNELLCYAFNYADNSTVSSLSACLCEFYQPQEISSAREILWKEYEQVISTLTKKTRRSQAPTD
AVSAKPFAEDIGVWINHVKNNTSASIMTTFCAVNIRKIPNCPPEEINLFSIVARLGALEKKLEDSEPTVHRVQTREDIAA
PLAPVADDQLQTAVNEPPQKTSGVRPLVAQAEWTSVVKKRMNKKKKIRIAAKELTTVVGSASDCSIKASEPVRHVFINKV
DKQCTNENIHDYIKKKGITPKDVRRTSKEGWLSTSFKISVPSVNFNDLLKAEFWPSGIRCREWLSYIPRKRIGSANADLN
ENDAFLSDGLSEEEEDAHDSFATSDAAAAHHSHHG
>R1-1_DAn_pol#LINE/R1 1938-4898  [Drosophila ananassae]
MRCTQINLNHCEAAHSLLRQAVIDGGTQVVLISEPYRSIPGNGWLSSSCKGAALWSTETAPQDTRTSCEGFVRASIKGVT
FYSCYAPPRWDISRFQRMLRSLVSDARGRSPVVIGGDFNAWSPEWGSRVANERGISLLEHFATLDVVLANRGQKWTFNKA
GRGSIIDITFISSALIRKCDWEVSDSFTFSDHQAIHFTLGGVSRKWIPKVTGPKWKDKSLDREAFSVALQTHDWTQPSSP
EESANDLSRSIAAACDCAMPTRTRCRRRASVYWWNQDIQRLRTACLRARRRYQRARVAEDRITKMEEFKAAKKALKLAIK
ASKRECFRRICDEAQVDPWGTAYKVVMKKMKGQEYLRPTCPILLRKIVESLFPKHPPKREILIAGDAEPFTPVSEEEVRS
YAKKIGTRKTPGPDGIPNAALKQAMEEKPEVFAETFNKCLQRGTFPKNWKIQNLILLPKGNKPTDDPSGYRPICLLDTVG
KVLEMTIATRISKTIEEKGALSGNQYGFRKARSTIDAIKAVTDMAEAAIAGSRWRWGDKEYCAMVTLDIRNAFNSANWTR
IHRALFLAGTPVYLQRIISSYLSDRTLLYETEEGTKRYEVTAGVPQGSVLGPLLWNIMYDEVLRIELPEGCKLIGFADDL
ALMVVAKETKEVETKANNAIKCISAWMADSGLDLAAHKTEAVLFTSRKKVEHITIQVGNCPIRSKDAIKYLGVMLDNRLS
YGAHVDYVTKKSAGIQGALSRMLPNIGGPKEGRRRLLASVVTSVLLYAAPIWAASVRGNLGLKRKLGASYRLAALRVISG
FKTISEDAALVLAGMIPIDILATEAEEIYKSIQQEGSTAPREAIKRSARQWSLSIWQERWDSATKGRWTHRLIPNLQEWI
GRDKGQVSYQLTQFLSGHGGYRKYLHRIGHEESPECPNCPGADEDPEHILYMCRRYRARAGALPAPEHLIRYMCKAEEQW
NRVSQVIAYTQGDLRRLENERRLRENA
>DMRT1A_pol#LINE/R1 1797-4859 [Drosophila fruit fly genus]
SAAVTWTRTTRRVVLHAPPTKPTPKELIAVKMMPEEINIIQLNVNHCAAAQNLLTQTAKERHADVVLLSEPYLPGVGNSG
VLLDETGKAAIKCTSRLLVEEWDTVPMRGIAYAKIRGIHFYSCYAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAW
ATEWGSRISNTRGRAVIDAMNLLDLVLLNDGFKPTFNNDRGTSFIDVTFVSRVLVASSNWMVHEDITLSDHNLITFGART
MRPSPKQRRCALGPVWDIRKLDEDMLAYQIEGMESIIGHAETMVTALMDRLRAMCDAVMPRKRNTKRKPPVYWWSDSLHQ
LRTECIKARRQAQRSRGQPHHSQCIEVYKAKRTELKNGISAAKANAFKDLIDSVDDDPWGLAYKVVRKKLNSAGAGSPQD
PAALANIVSELFPSQHTLWQPAVDPPASDFPCITSCEVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCL
LDGVFPKRWKKMKLVLLPKGKGPANVPRSYRPLCLLDIVGKLFERILYARIELITESPTGLQGQQYGFRKGKSTLDALKS
VTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILGAMRNLGVPDYIRGVIGNYFRDRVLWYVTEDGPRSHQV
SAGVPQGSVLGPILWNIMYDGILSISKPRGVELHCFADDVAITAVAKTIPELQDISNVAITAAIEWLEKVGLKIAAHKTE
VVLLSSRKSVECMRVEVKGVEIASAETLKYLGVLIDRRLSFKAHARYASKKAAMTAAALARIMPNVGGPRLPARRLLVAV
SKATLLYAAPIWSCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEGYTQLEIKEWI
RGVWQTRWQESQRGRWTYKLIPQLTEWADCEHKTVDYHMTQFLTDHGCFRGYLCRFRHVDTAQCLYCTDAVETAEHILLH
CSRFAEERAQLVALAGSPLSPRGLVAAMMADKIVWDGAHVIIVTMMKRVRKDEMANRNYR
>Poseidon-5_HM_pol#LINE/Penelope 1-2142  [Hydra magnipapillata]
ARENMFIKSKERLVKKFLILQNEXENKNDNAEKTTNYKKNAVLNLCDTDIPVSHNNFLNLGPHFVPSLKSIPYMDIITAT
ESSALKLEYNNKIENAQDLRKNVLRELKTGKKLNNNLTKEQWKAYREIKEEKNVDIYPFDKGTGFVRIEHSKALEKIREQ
IGPTKIVSEDPTANYAAKIRRYLSKLNKRNCFSKEEYEKIYPSDPIPPRMYGVIKAHKPEKFYPMRIIISTIGTANYGIS
EFLVKIIQPVLNENLTRLKNSFDFIKKAESWKIDKDEVQVSFDVVNLYPSVPLKEATLVLIEKLNNNTTYKKLTRLSIPE
IKQLIELCLFQCYFHWNNEIHIMENSGPIGLSFMVVLAESFLQFHENNAIKIALNFNPALNLKSFLRYVDDSHARFPDLN
QAKHFQYILNQQHPSIQYTIEVENELGTLNYLDIQITNKKTGKYEYKVYRKDAITNIQIKPHSNHDPNILNSIFKGFLHR
AYSICSKSYLQNEINFLIDVFIENGYDKTQMMNIAHQFQHKRQNKITIPSEINNYPVVSLPWVPGLSPKLRKIFRKAGYR
AVFKSNPNLRSLLTSKNKSKLPNNSQPGTYIIKCNCSKVYVGETKMKVNTRMHQHQKSIDENKQHQSALALHKTFCKKEI
IWEQTKTLKVENKKFERKVREALEIQKNMCSAKNGGINLDEGQYVKTKFWTPFFKFQRKRSHSTADVNSNVLI
>Penelope-5_XT_pol#LINE/Penelope 37-2541 [Xenopus (Silurana) tropicalis]
MTWMNENLHRHIATHFGENTLKLVREYERTARKLADYRNHLRFNLRCRYQGITPCSLRLGSSVKGHRAKVILQKAQKQLL
NERVRQTNFSIEVLVHKFDNAKQRLTAKLPVLTLQRVVEFTERAQLAQHAKGKERQINKFTSLLSRTNNTQRTDKSTGRK
EDENKTCQNIKDLWVKNLSDRELTEPEKDVLAKGLNFAVAPRYVPVVDFITATESSIHNNKIPVDEAENIRLKVSAALAN
AKAPPSNLSLQERRALTSLAKDSSVTILPADKGRCTVVLNTSDYHAKVSTLLNDSDTYEQLKRDPTSNYKKKVIDCLQHL
EKEKVISPALYRRLYPGEATPCLYGLPKIHKEGAPLRPIVSSINCVTYNIAKYVANILAPLVGNTVHHIQNSMDFVKKVK
ELKLEIDDTMVSYDVTSLFTCIPTAEAIDTVRKRLKQDTTLSSRTKLTPEQVCSLLDLCLNTTYFKHKEVFYRQKHGCAM
GSPVSPIVANLYMEEVEKKALDTFKGTTPSHWFRYVDDTWVKIKEREVPAFTKHINSVDKNITFTREDVKDSKLAFLDCA
IVIKEGRDLDIEVYRKPTHTDQYLLFDSHHPLEHKLGVIRTLHHRAETVASNAEAKEKEYKHLKGALKTCGYPDWAFIKT
KSKTNRKTRPTNRREEHSRRNNIVIPYVAGTSEKLRRIFNKHRIPVFFKPSNTLRQKLVHPKDPTPKHMKSNVVYAVQCS
EECSDLYIGETKQPLCKRMAQHRRANSSGQDSAVYLHLKEKGHSFEDSNVHILDREDRWFERGVKEAIYASLEKPSLNRG
GGLRHRLSPTYNGALTSLPRQFHNSSHFQSCTLKD
>Penelope-4_NV_pol#LINE/Penelope 26-2902 [Nematostella vectensis]
MEEGFYKLINLKKKRSRYLHHYHFLADCQLLGVVTKGLIIKKTANIGHISDGFRDLWDSTLYECSSRLQVLLLQETSKVL
DGVTEKIERLESQLDEGHMSYYQNFCLDILPNFEDGLNKKHEQKLDALLSFYRREIVDVMETTVDHKDIAFDASHEVIAM
NSEEQDYMVDGGAEHEAHSMDNIIGTLSGSIPETINTNTVTSTVGESTMGLNVVVNLSSRELSRGEVALLSKGLKFCPTP
NELDVFALRKDINDFVRRIRLREFFYDPDAVDADFSETPAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTKQGKIYSN
LTQDERRALKDLRYAKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDD
KTLDYLIINGKPRAGRFYLLPKIHKKGNPGRPVISGCNTCTEKISEFVDYHIKDLVPSIPSHIKDTKHFLNIVRDMGTLP
QGAILVTADVVGLYPHIPHDEGLEALKAALDKRGKLTGNYIPTEDLVDLARIVLENNNLVFNKKHYLQVLGTAIGTRMAP
SYANLFMAKVEKEIIDSSPVKPYLWRRYIDDIFMIWTEGEDALREFMAHMNSIHRTIKFTFEWSTSQVNFLDVSLTLRDG
FISTDLYSKPTDKHQYLFHTSCHPSACKKGIPFGQALRIRRICSEDSSFEKRVLELQGYLVDRGYDSRFVGREVDRVRRI
PRDDTLKDRRKGKNDRVPFVVTFHPALPNLPGILRNLQPVLESSSRCRGAIGRVPMVAYRKPRSLKDMLVHSSLKEDSTQ
VRGCGKCGGKRCRVCNFLKTGREFRSTVTNKKYVINFDLDCNSDFVVYLITCSMCSKQYVGSTINSFRKRFNNHKSRLNK
HPSLPVSERVKDDLIYQHFHCDNHLGLNNVMVQLIDKCNSEAQLREREGQWAYRLKSIYPRGLNSDDFFCSRNPRRDV
>Penelope-8_HM_pol#LINE/Penelope 49-1920  [Hydra magnipapillata]
TIKFRNLNNTFQEKVNNDIKSLRKSNKTLTPADKTSNMYKISKDDYNHLLKNAITSIYKKADPKLKNVVNKEGKQILKNH
DIFNRIEINGTSDCFITLKDHKDNFLNNPTVRLLNPAKNEVGRLSKLILSNINSELRXKLCLNQWQNTQNVINWFQKIDD
KHLRKFLVFDVNDFYPSIDEKILNNAITFAEQHITIDEQSKSIIHHARKSFIFNDGVSWIKKKAGLFDVTMGAYDGAEVC
ELVGIFILDQLSQFYNKNDFGLYRDDGLAVFKNKNGHQMEQIKKHVVQVFKRNNLNISINCNLKIVNYLDLTFNLTQNSF
QPYCKPDNKLSYVHADSNHPPNIINNLPKNIELRLSANSSSEVIFNKSTHLYEDALKQSGYDYKLAYKPSITNVPKNHHK
RSIIWYNPPFSKNVTTKIGQRFLTLIDKHFPKDHNLHKIFNRNTIKISYSCMPNIKSIINSHNKNILYGDVKLSEKTCNC
IKKSLCPLNNNCLSNNIVYQATVSSNKPQYKDKVYIGISETSFKLRYANHLKSFNIKKYKNDTELSKEVWDLKDNNFTSS
IKWNIIKRCKSYNPASKICKLCLNEKFEILFYKGDNLLNKRGEVVSKCRHKNKFLLSLFDSGD
>Penelope_Pci#LINE/Penelope 138-2777  [Dontknow]
MQGTAFSRMEWKSINFMKKLVQIQTDIIFLSKCKQMDIIPKGLKVKNPLQSTYHTDYAERLCHTLSKKLRNHLISILYSK
QGKIKNELSKLDTLIKNQPSTQTSSWIDFTKTRQAIYNTNFASLQRKKDTKLSKLLHATRSHNSSSLNPPNNIVNLSSYT
LSPAEESVLSRGLSFCPSXPTNMIQFCGDLESYFRRLRLKEYFQHTSEQHTNPQNPSYQHYKKKDSAWTPPEGRNNRLDF
YIDCFRRRARAEIVEKQHHLPHNLSRAEHNAIYSLRNNSDIIIKKADKGGAVVIMNKLEYEQEAARQLSNTTFYRPLSSD
PTEDYQKKLHHLLKKLPEKAQEQICTDTRLEPRPGVFYLLPKIHKPGNPGRPIISGIGTLTAGLSGYVDSLLRPYATSTP
SYLRDTTDFLRKLQSIGDLPENTILATMDVEALYTNIPHKDGLQAIRNSIPDNVTANLVAELCDFVLTHNYFTFGDNIYL
QVSGTAMGTRMAPQYANIFMADLEQRFLSSRPLTPLLYLRYIDDIFIIWTHGKEALEEFHHDFNNFHPTINLSLDQSTQA
VHFLDTTVLISDGHINTTLYRKPTDRYTYLHASSFHPGHTTRSIVYSQALRYNRICSNPSDRDKHLQDLYQAFLKLQYPP
AEVKKQIDRARRVPRSHLLQDRPNKENNRTPLAVTFSPQLKPLQRIIKDLQPILKDDPSLSQILGDRPVLAYRQPPNLKQ
ILTSNHTPHNKNTNPGTYPCNKARCQLCPHIYSSDTIIGPNHISHAIRGSFTCTSTNVIYAIMCQQCPSAMYIGQTGQSL
RKRINGHKSDIRNHNIQKPVGEHFNLSGHSMTDLKVAILQQKNFKNRLQRETAELELICKLDTINLGLNRDWEWLGHYKH
>Penelope-12_XT_pol#LINE/Penelope 1213-3732 [Xenopus (Silurana) tropicalis]
YFREHDITRQTSLKKKPRRTIHSIYTKRKIRRGQGKRKGIPKTPDPAELQISGETAETVTRDALQVINLSKHTLNKDHMS
LLMKGLSFCPTPQGDYFELEKDLNLFCRKILLKKYFKKDKLREPDIVDKDKEILGVLESLLDESDLDQKFQKANRSGLKK
KSDFTPGYGISNYVSVFRDMASDALLKLNHKRQSDNLSKAERQALKELKSWEDVQIKPSDKGGNVVIWDNDMYILEAKRQ
LHSDTYKRLYGNPTEGFVAIHNNLINDAFRDLLISEQEKSFLLVDNPRVATFYLLPKIHKNKVKPPGRPIVSGNGNLTEN
TSKYVDCLLRKYVTALPSFVRDTMEVLARLNGTHVMKGTYLVTLDVEALYTSIRHKDGIEAVKYFLDIDPSINPDLGHFI
IKMLSFILHHNYFVFNNVFYLQIQGTAMGTSCAPTYANLFLGKWEQDVVFGDDLSFFTNYIPLWIRYIDDILFLWEGPLN
LLNDFITILNTNSLNIRLTQNISQNMVSFLDLTIGIDEKSNITTDLYRKETATNTILHFESYHKNTVKRSVPTGEFLRLR
RNCTSFETFRLRSEQLKTRLKDRGYSNKILKQAYHRALTTNRDNLLKTKPVKTHDDQQLRFITTYGPQTYKVQQVIQELW
PVIHQDADLRSILPETISFCYRRCQNLGDHLTRSHFTGRKRQPPVKGTFRCGSCVSCSMVKNQDSFTDRFGNLQHVNDYI
NCKTSNVIYCIECPCDRKYVGMTTQRLNKRIQKHVSTINMAKEDRQKNKILSTVASHFLTYHNGNPEKLQFWGIEHVSLG
IRGGNISEFLLKRESKWIYTLNTLAPTGLNEKIDFSTFLR
>R1-1_DF_pol#LINE/R1 1690-4650  [Drosophila ficusphila]
MKILQLNLNHCRAAQDLLAQTVRALKIDLAILSEPYASKHDGIWFQNTQGGAAIWSCSPRPLQIQCRHSGRGFVRAKVGS
LTIYSCYIAPSVDSQTFGSIVDDILEDARGRHPIIIAGDFNAWATEWGSRLTNHRGHILLDAVARSGLTLANTGSANTYE
KAGMGSVIDITFMSPTLTRTSAWQVSEIYTGSDHRAITMEIRDGRFKRKNTNASTGFRDSTLDPQALILMAEDLAYDERK
NANENAVCIKKATWSACAASMQRRRAGGNGCPPVYWWTDAIAEARRKCHQARRQYMRSRGRPNFASLQRLYKSLRSALKK
EISASKKRCFAKLCDDADARPWGTAYKLVMGKLAAFSRPTPTCPEQLSNIVAHLFPPSVALQPQQEPSPLQSDNIPTFTN
AAEVLAEVRRIKVEKAPGPDMIPNKALKIIMTERLEIFVRLFNACFAQRTFPEAWKMQRLVLLPKGSQNDNLAAYRPLCM
LDTVAKVYERLICNRIEVALSEGPGLSHNQFGFRKKRSTVDAIGLVHKLASEAIQGARWRGGSKKYCLVTTLDVKNAFNT
ANWVRILSALRRLQVPSYLVDIVSEYLSNRQLLYDTEEGRRSYAVSAGVPQGSVLGPTLWNCMYDGILNLQLPEGATIIG
FADDIAVVAVAKHLNEAEAVTNAXVEQASHWLCANGLKLAEHKTEAVLISSRKAVETAQIIVGRTIIRSKPFIRYLGVML
DHRLTYKFHLEVTGNKAAKVATSLARMLGNVNGPKQQSRRLLASVVKSTIMYAAPIWAPAMTSPTYSRSCRAAYRRAALR
VICGFRTISEDSALFLAAMTPLDLLAKQAQELAGGYASMEETRARVVSAWQSRWSGSAKGRWTYKLLPDVERWTERKHGQ
VDFYMTQLLTGHGCFKSYLHRFGHETDPFCTHCAGAIEDAEHVFFVCPRFEAIRHELSLAIGKPFTVSDLMDTLLGSQNN
WDAVSKMTVFVMKSMRRAERQRNRLXT
>R1-3_DPer_pol#LINE/R1 1999-4965  [Drosophila persimilis]
MLRIIQLNLNHCRVAQDLLTQSVTELNTDLALLSEPYKTVRSNTWVMDQSGKAAIWMCGKPAQHLDGVKRSKGYVRGRLK
DLWVYSCYLPPSWSLEEFSDTIDKLADDIRAHSPSLVAGDFNAWATEWESATTNARGRVLVEAFASLDIVLKNAGSNPTF
SRAGTTSIIDLTYISTRLAASTLWQISEQYTASDHNAILCSIQTRRATQSIATRGHYKETTLNTPAFRAALAGLAEVEGE
GDLVAQVMGQLERACKASMERSKPFKGHRPVYWWNQAIEEARHACIGARRAYHRSRGTADFQALKEIYTRRRKALKKEIK
NSKQRCFLDLCDEAENDLWGKAYKVVMKKTGAFKHAAPTGADKMEAIVKHLFPAQDTQIDRITSTGHQVPPVTPQELAKL
AKRVPNCKAPGPDGIPNRALKLAISLHPTIFAQTYTKCLTDGCFPGRWKKQKLVLIPKPGKDTEDPSAYRPICLLDGAGK
MLESIISARLTEAIEAAGGLSDSQYGFRKARSTLDALDKVCGTARKALEGTRWLGGAKKYCLVATLDVKNAFNSASWSRI
MSSLRTLEIPGYLQAMVSDYLDNRWLTYDTEDGPRSYSITGGVPQGSVLGPLLWNTMYDGILRLNFQQGVEIVGFADDVA
VTATKKTLAETESCMNEAIRIISDWLDLAGLKLAEHKTEAVLISSRKQVETARITVGGASITSKRAIRYLGVMLDTRLSF
REHLQQTHQKAHGVVMAVSRMMLNHRGPKSTSRRLLFNVAKSSILYAAPIWAQATRTKSYTKGIESDFRLGALRVSSAFR
TVSTEAIMVISGIPPVELAAKEASEIHKGRKAANTQAEARTAKTRARAECLESWQLRWDNAVTGRWTHRLIPNIAAWMNR
RHGELTFSLTQVLSGHGCFKEYLHRFGHEEDGLCSCCGTVENAEHVLTACARFSEARRRAEGTIGVPITVEGLVPRMLEN
QANWTAICSLATEIASELRRLERTRNERP
>R1-2B_AP_gag#LINE/R1 875-2125  [Acyrthosiphon pisum]
MKKLRCSPDPVPVAREAIKWIRYTIESSATKKTNLPAEIQRAMFDKLKALDTAVHDMVISNLQLSSQLEEARRSAEICVG
AAAAQFGTELRLRETAHEQTLEAVVARYAEREALRQQELEARGPHAERVVTQEAPVETFAQVARTARPPTTTASRKPDRS
VSRATKRNKALKEAKQVEHIPAFVIKSCGGKDPKEVRNVVWKKVASQQVQPNCHSTIAKDGIIKPLNRETADVLKSLAKT
STLIVEDSPRWPRVIFRGVQADARPDELQSAIISQNGHLNINEDTTEEILRPIFKQGKRDMDTTNWVMEVNPKYYDRFED
ATVYIGFMRCKAAAFEEVTQCHICLKYGHPASKCQGTEPKCTHCSRAGHKAVECPAAEGDPICANCRGKHSARDKTCSVR
TAYLLGIAKRTDYGVSQ
>R1-5_DF_gag#LINE/R1 78-1238  [Drosophila ficusphila]
MRDELTTSIKLQKTAALALAKSAGAAGVSTLSRETQVVLTTVCKHTQTDILPMEPYAEGKSTPKRLRDPQTLERSTPPKK
SRTKSDGNRKVVNASQKVVNPELRVVRASSPRAVVLPAKTTSQTSDADPAVTAKPEAWTKVSKKPKRATRPRPDAVMVSG
AGLSYADMLRAVKGEPSLNHLKESVQSIRKSTSGNLVLRLSRSSAKTATEVQMAVVQALGTTAVVKTLTDQTLIEILDLD
ELTTKEEVAEAVKAKLEDHSLGEDTVRSLRKVNGGRQIAVLKLPSPMAAKLIGSKIRVGWVVCRTRLXXEPKHCFKCLGF
GHXASACHSTADFNGACYRCGMAGHLANTCTNAPNCRLCEHKGLKKDHATXCRTCPAYLEALKKLKC
>R1-6_DK_pol#LINE/R1 2563-5559  [Drosophila kikkawai]
MKVIQINLNHCAAAQDLLSQTVRESGAELAVLSEPYRGGRNHNWAVDXSGKAALWVCGNTSLRLENVLADKGFVRAKAGG
WWVYSIYLAPSLTLAEFAVILDRLAADARGRSPTLLAGDFNAWAVDWGSPTTNVRGRTLLEVLSTLDVALLNVGQEHTFS
RAGAGSVVDLTFASRSRAGQCTWMLSGVYTASDHAAIFTTLDAGNTRPPPPPAQQRKCFRVDSLDTQAFASRMQRVEATG
DSEAMANSVMXQVLTACEECIPSRTAHSRHRDSVYWWNHEIAEARKDCVRARRQYQRSYGSQSHLVKRETYHRCRRALKA
AIKGSKKKCFLDLCEAADRDPWGNAYKLIVKKVGRANNRAPLDAESLERIVAHLFPRMTNPELAAGAGTYPLHELEPVSE
EEMLAVAARIKVAKAPGPDCVPNRALKLAICLRPDIFAALFDKCMREGLFPSRWKAQRLVLLPKPGKPLDDPASFRPICL
IDGAGKVLEYLISSRLERAIVAAGGLSDSQYGFRKAMSTVDAITKVVDIASAAIAGQRWKGGSKEYCLIVTLDIRNAFNT
ARWGRIMDALSNFGVPTYLLNLMRSYFHDRVLQIDSDSGTQAVELSCGVPQGSVLAPLLWNAMYDGVLRLPLPGRTEIVG
FADDIAVVTVAKEIARAEETSSQSIAIINEWLSNAGLQLAPQKTEAVLVSSRKKVEVASVRVCDATVRSSRAIKYLGVMI
DTRLSFREHLTYASSKAATTVRALSRIMLNHHGPRQASKLLLASAARATMLYAAPVWSHAMASPSYSRGLIASHRLAALR
ICSAFRTVSDQAALVIAGTPPIDLLAKEQAEIHKKVHGRVLSSGEKKEARAAAKSASLTAWQARWDASSKGRWTHRLIPC
LEAWTKRAHGQVNFFLXQVLSGHGCFRSYLHRFGHEESGGCSRCGHDVEETAEHVLFSCVKFENERRTVETLLRTSITVE
NLVPEMLRNEENWQGVSSFAATIMGKLRIEERRRNQEQT
>R1-5_DF_pol#LINE/R1 1235-4222  [Drosophila ficusphila]
MLRFVQINLNHCRAAQALLEKAIHENRIDVAILSEPHRVELVGDWVDATSRKAALWCCCRGRNFAXVKPFTHFSRVLINS
IWVYSCYLPPSLKLAEFTTVMEDLANDARHRSPVLIAGDFNAWATVWGSQETNARGRTLLEAFASLDITLLNSGXKPTYC
KAGMESFIDLTFVSSSLHGATQWMVSDMYTGSDHQAIICSVGVPPEPRNVQPSPIAYRSETLDLHVFXETLGSGLTRLNE
EGLPDDAQSLADATMDSVKAACNSSMNTRRLNGTHHPPVCWWNESLTEIRSCCIHARRLCQRARGTPNFPVLQESFKVAR
KTLKNAIRDSKRECFLRLCDNADKDPWGAAYKNVVKRLNSGGSRVPTDASSLATIVETLFPQKALPTLQSLPPDTDPERR
LIPVSPEEVVLAASKIKPNKAPGPDXIPNRAIKLALNLHPEKFAYLFTRCFEEGTFPXQWKTQKLVLIPKPGKPPSDPSA
YRPICLLDTAGKILEGLIASRLETAIERGGGLAHTQFGFRKSRSTLDAIGMVVDIASKAIEGTRWKGGDKEYCLIVTLDI
KNAFNSADWGSILRALSAFNVPNHLLNLIRDYFRERWLEVATDSGTTRYPVSAGVPQGSVLGPPLWNAMYDGVLRLPTPP
RTRLIGFADDVAIVTVEKNIHEAEESCNSCIRSIIRWLNAVGLELAAHKTEAVLVSSRKTVETARIRVGDQVINSKRAIR
YLGVMIDTRLCFREHLDFVNRKAAVAGQALSRIMLNSRGPKQQRRQLLMSVVRATILYAAPIWHTALSTPSYFSGIASTY
RLCALRVCSGFRTMSDDAALVIAGMVPIDLLAREAFSLRSSGPATSAVXTNLRALSISSWQTRWNASTKGRWTHRLIPDL
AXWMDRKHGQVNFDLXQILSGHGCFRGYLKRFGHETVSDCTLCGAGIEEDAEHAFFVCNRFAAARHEVGVQVGGALSPDT
LIATMLSSESNWALITAFAGQVTKELRRLERIRRGA
>R1-2_DTa_pol#LINE/R1 830-3823  [Drosophila takahashii]
MQLIQLNMNHCRAAQDLLMQTVRELGVEVAILSEPYKVGNDRRWAADINGTAALWLCGGDGLEMTNIRAGDGFVRAKIGD
FWVYSCYLAPSVSAKDFERIMDDLCSDLRGKTKVVVGGDFNAWAEEWGCPSTNARGRAVTDTVASLDVVLLNEGSQQTFS
RASGGSIIDLTFVSSSLASRTSWRIGDVYSASDHEAILLTIGVTASNRLPPAVHRKAYRQDTFRTQAFARALEGLSVSDG
DTADDAANKLAARLEEACDQSMDQRRTFRKDHSPVYWWTEEIASLRRTCHRARRLVQRARGTPNLESLNETYKAAKKALK
LSIRDSKRECYWKLCDELENDPWGRAYKMVVKRMSAGNRSPSDPSALEAIVQALFPAGRRHSIPRCTSGISDSICPVTEA
ELLATARVLPNKKAPGPDSVPNGAVKALLSLQTKAVADLFNKCLVEGTFPDRWKRQKLLLLSKPGKPAGEPSSYRPICLL
DTIGKVFERVIAARLNAALESAGGLSPNQYGFRKGRSTLDAIGKVTRIAAEAIAGARWKGGTKEYCLLVTLDIRNAFNTA
DWGRTLESLRSFNIPGYLLNVVHSYLSKRQLSVDTSSGPRIYEVTAGVPQGSVLGPLLWNTMYDGVLKLPMPSNTSIVGF
ADDVALVVVSKHVPTIVATANRAIKAVEAWLSVAGLELAAQKTEAVLITSRRVVETAEILVGGTTIQSQRALKYLGVMLD
TRLSFREHLEYANKKARETTRSLCRILLNTRGPKQDKRILLASVVRSQLLYAAPVWAEATAKDSYMREVNSTYRLCAIRI
SCAFRTISDDAVLVIAGQVPLGELVRESKDIRTTLSLIQDDPRAKAEARARSRMQSVSNWQKAWDISSNGRWTHKLIPCI
EAWVNRKHGQVDYYLTQALSGHGCFRSYLKQYGHETEDGCPECGSGIAEDAQHVLFECHRFNHERQVLEEIAGARVQPET
LVPLMIGNQRTWEAAAAFAASVLRTLRSLERERRGAAV
>R1-2_DAn_gag#LINE/R1 855-2261  [Drosophila ananassae]
MEGKNKITPGGTHNSGNPPAEIPAARARILEALTIIPTKTASPVAHLAGGSVCATSETAEELQAFGRGNKIKRTPPRQTA
SDHTPKRYREPNSPPSSSQPEKKLKTPLSPIDEMGAILLDLLAKVNEQRVRSINQGMKNSFARLKELQELLKDQTLMAPN
QEAGDRCSCNREAGGNKAHVEEATQTTPVRATYSKVARTKGPAEKFPPQKGKQAAEIKGAKKSLARKSRPDALIITGNAG
STYGDVLKLVTRRQDGKLNDVCQNVKKTRRTAKGDLLLELAAGKDAKVLDLRQTLSQVLGEAASVRAVTEETNIEIRDLD
DLTTKDELVAAIVAQMSTQEEAFRVKSLRPGYSGTQVATLGAGPDLASKILSEGRLRIGWTVCRVRERKAQRRCYRCLNF
GHIAAFCKEQTDRSNWCLRCGKPGHKVATCTSEAKCFLCAAANKPDQAHVAGSKRCPLGNIEATRSRRK
>R1-1_DGr_gag#LINE/R1 253-1644 R1-2_DGr_gag near-identical. [Drosophila grimshawi]
MPPRKKRSAELEAGGAQMVSSDDDTSQSSDAASLAEVRRRGVLSKQQLRKAASETAVDSAGKNVERRRAEGNLVVTLRVP
REKGEVCNSGTPSVSAGVPAVEEPIAACSASNALPLRQRGTPIEKMKAISKELVECALAECMTGSLVGSMLGYATQYEEL
LFSLIAENERLKGRLEAVRFNATNEHAGHVTAGQTRVPPAAVHRGGPMSTMSSAPEMPPPVETWSLVVRSKTAGKTAKEV
VDKVVKEVGPTLGVRVHEVKPLRDGGAIIRTPSVAERRKIAGNAKFSEVGLEVSVKERLGPKVVVQGVHAVISPDEFMAE
LYELNLKDKMSKEAFTKGVRIASKPWSQEGSAAVNVVLEGAGLAMQTLLDVGRCYVKWFSFRVRNFDPVVGCYRCLGFDH
KVAECRLKQDVCRRCGQMGHRVAQCSNALNCRNCAFKGRPSEHLMMSPACPVYSAIVARASARH
>R1-2_DAn_pol#LINE/R1 2261-5245  [Drosophila ananassae]
MRIIQINLNHCEVAQSLLEQYARDKRVDVALISEPFRKTRSQNYILDSTQSAAIWVFGTQPENTFAGEGFVQAKVNGIWL
ISCYLPPRLTLQQFGRTLDEVAEAARPITDVIVGGDFNAWAEEWGSALTNARGRTLLETFATLDVALLNTGSRHTFSRAG
CGSVIDLTFCSSRLFRRTTWALSDEYTGSDHKYIICDTSNGARETPGSRPIRFNPATLHTQRFAQGIRMEDPIGDAEDGA
QHIMLAVEQACRASMKLSRNHSRHHEPVLWWSPEIAEAKRECLRARRLHQRARGRPDFEPKRQEFADKRRALKTLIKEAK
KRCFLEMCDAAEQDPWGTAYRTVVKKAKQAKPLPPREPQTMENIVEHLFPTLNYDAQVAESETAMPVPFQEVTIQEIVEV
TAAMKSGKAPGPDGVPDIVIKLAMATCPAAFAKVFSNCIREGVFPRRWKVQSLVLLSKPGKPPEVPSSYRPICLIDHAGK
ALERCILRRLQNAITLAGEISPLQFGFREGRSTIDAISMVKRIAAKAIEGTRWAGGGKEYCLIATLDIKNAFNTARWDAI
VEALQNLNIPANLVGIIKSYLSDRILRYDTTAGTQEHVITCGVPQGSVLGPTLWNVMYDGVLRLELPERAQIIGFADDVA
IVVVAKTLQLAETSCNAAIERVVEWLTQAGLNLAHQKTEAVLISSRKRVETATIQVGGHVVKSSRAIRYLGVMIDTRLCF
REHLIEANKKAANVARALARMMLNCRGPKQGRRLLLQTVCRATILYAAPVWAEAAKTKSYVKGVKGTYRLCALRVCSGFR
TISDDAALAIAGMVPIDLLATEAKVVYEALVDQREEHPAGHRQGLKRDARAASMASWQRRWDESTKGRWTHQIIPNISCW
MRRKHGEVNFWLTQILSGHGCFRSYLYRFGHDEDPRCPRCGIEETAEHIVLSCPRFTGARDEFLGGMTTAELLGRRMIED
ADAWSNVCSFAVTAMKELRRLERQRAVARSARSEP
>R1-2_DPer_gag#LINE/R1 397-1788  [Drosophila persimilis]
MEEEEKRVFERRTSLQRSPPQWQTPRGIWPREQAVEKPAQLSLGTGTPLKAPLRVLPALTVSAPAEVPVNPFDFSSASTD
KSGTGPKAEGDLRAILASLVEKSTELSKMLRDARYLNKEMKELAQNVVRMQKSALHSFDAKFQRKERVERRDQETQCSPQ
HDAPKRKLDKPTRSSPKRRNNMSGHPTLQSHEQPARKTESAAPTEGEWEKVKSRAHARKPRPRPDVIIIEPKGEMTYAEI
LNLVTRNQSEKMKKVGESVSRVKRTAKGALLLELKDASKETAQLLREDIGTVLGGKAEARALTQQTRLEMLDLDEMATSE
DVRKAFSEQMGITLDVDAIKSLRPGFGGTQRAIICLPATLATKALSVGKVKVAWSVCRIRERNLPLKCFRCLEIGHVALN
CKSSVDRSGWCFRCGSEEHKISDCHNEAKCFLCVGKGKPHSHVAGSHRCPMAPKEKASQHAGHG
>R1-2_DEu_gag#LINE/R1 650-2089  [Drosophila eugracilis]
MGGRGPGAQHLGASLGAGPTNNGGTPANKGLQAPPNTDGFHTPLSSLPDWANMGADPFKKSSVMARSPEHKVEGSGKQPS
TPPVAGKDSPKAEEEQGDVLVQLTSLGSKTRELKKLMDGKRSITNPMREIVDEIDYLQREVLSAVQSMIEEQGKAKKAVE
KTCAEVLASGKRPRGQETWKTAALPAKKAMHKAPANEASQGGNKGKHAMAESTSNPQEPVKKPEEWKQVKQKARKPKVRP
PRNDAIVIATSTGGSYADILKTVRTEPQLKELGQAVQAVRRTAKGELLILLNKVSDPKTAELQTTMKAVLGRNVDVRALT
ETMLIEVKDIDEITDKTDVLCAVKSQFDVELPESAVVGLRAAYGGTQTATLRVMPDIGRRLLEKGKIRLGWTWCRVRPKI
TPKRCFKCMEFNHIAGNCRNQEDCSKCCYNCGAKEHQARGCKAKACCMLCKRKKEKDCEHPTMSGKCPYFKKAMQGLRGK
>L2-19_ACar_pol#LINE/L2 3-2606  [Anolis carolinensis]
RGVGIVARDHFSIRTIPTPDIMGIECIGLTLAIRESVTILLVYRAPGAPNENIPKLLDLVADWALKFPSLIVLGDFNVHA
DRLLSSSIARDLVQSMETIGFSLMVTGPTHRAGHTLDLIFSIGIQVTLSSVLEIPWSDHYILNTQIKSSPPQHPETEQIF
ARPRKLMDPIRLSSVLKELDYTADSLHERVENWNKNLSTALDIVAPKRAFRPRRNRSPWFTDALRQMKLERKRLERKWRK
KPDETSKLALETHQKIYEAATREAKKEYNSSLIASARSRPAQIFKIVRNIINPTHPAKDMASQDITAETFQSYFINKINL
LREGLPPTEDTLRELEAFWPSSDKLLELFVPLEMEDLEKTLAAARPTTCSLDPCPSRLVKECWEGLRDPLRDIINSSLEQ
GIFPECLKEAVVHPLLKKPSLDAAIPSNYRPVSNLPFLSKVIERTVAGQLQQFLDETAGLDPFQSGFRSGHGTETVLVAI
TDEIRRQLDRGGSALLVLLDLTAAFDTVDHDLLIHRLAMSGVRGLALXWFNSFLRDRRQRVEWSGQSSESSCLCCGVPQG
AILSPLLFNIYVRPLAGLVRSFGIECYQYADDTQLLLRLEPGTTTIPENFKLCLEAVMSWLRASRLKVNPAKTEILWPGQ
PPELIQSLPDFDGEVLVPSATVKSLGVVLDSSLTMEAQITAISKQAFFHLRQARKLASYLSTEALATVIHATVTTRLDYC
NALYAGLPKTKTQKIRMVQNAAARLLAGSSIRSHITPILKQLHWLPIEHRISYKILILTFRARNGQGPLYLRDRLIPFFH
QWSPRSSQENLLYVPGPREVHLEATRRRAFSTYAPILWNSLPPYVRAMSELRPFVKALKTWLFGCAFK
>L2-8_NVi_pol#LINE/L2 2591-5530 [Nasonia vitripennis]
LGGVKVRGAECDGLRAGFINATSLNRHMEMFRQFLATARPFYHLFGVAESRFGPSVDDVFAQVKGYSVLRQDRNTQGGGV
ALYIHNSYKATILCSSPTTTDGRKPGIPEYLMCXIQKGRMPPIFVAVIYRPPGISFTTNSDLVDKLKLYAEDYNHRIIMG
DLNANMLSTSXDANFVKDLACELNLKLVEHGATHHVGESHTWIDVIYTDDNEVVLNANNMMATFPSRHNIIDFTIRTPKS
ESPTLTPFFYRDFKSIRCEELLSLLEACDWSTISCPGMTTDSKLEALSGNIMTVIEKLAPLKKFKPKNKKSSPWVNAELQ
DLYDKRDAVERRFKRTRDSRFWSEFQSLAAQAEQRTIEAREAFIQARISEALNNNKNIWIELRNLGLLSTTKEELHGFSP
GELNAHFAGVSVSESESEVNLDEIVATASEAGFTFREITFSDVVLAVAHFSSQAKGEDGIPQDVIAKSLPVLGHHLASIF
NSSLSSGVFPGAWKKACLVPLKKTAIPSAASDFRPIALLCFLAKVLEKIVHDQISEYLESEKLLDTRQTGFRRYHSTQTA
LLSLSEDIRAGINSKKQLLTILLMFDFSKAFDTISPSKLLRKLIGMGFSRSVVLWIKSYITGRNHQVVTKTVGNSDWLTT
NLGVPQGSVLGPLLFSLYINDLRDILASFKGPKGELSDSVEHLLYADDLQTYTQVARDDLSGGVDRLSAVARAVAVWASE
NALRLNVGKTKAIIFGSDSNINKVQSLKLPGIEIEDGVFVPFADTVTNLGVVMDSKMTWKPQVDAISRKVNRVLYGLRSF
RSCTTEELRKQLAGALATPHLDYCSLVYLDVSGQQSTRLQRLQNSCVRYICGARRDEHISPYRRKIGWVPVKARRELFAA
VMLYKAXVMGQPPYLAALFDRNQSRTSARDPQELVVPSARTDAGLYSFKAQGARLWNSLPRDVRDLPSLKSFKAVMRRRI
YVREIECTVDQNTDSATVS
>L2-20_ACar_pol#LINE/L2 1875-4832  [Anolis carolinensis]
MGIPTISGRGRYDGRLRPNIRGRLSRRKTRPPSDLRPIPKCTYDRRPVSSPPTLVLVNARSIRNKTATIRDFLTDQGADL
VCITETWIQEGDEILLQEITSPGYVITHQMRSGRRGGGVAMLSRESFSLRAVPVVDISGTECVGLVWDSPESMAFLLVYR
APSAPADSLSQLLETVSEWSLRFPRLVVLGDFNVHADTDSCSAAAMDLVSTMETLGLLLCSTGPTHQAGHTLDLIFSAGI
QVTQASILEVPWSDHCALRVRLEHAYPPGKGAEPIWARPRRLMEPSRFQNALKDLEPVSDSIDVQVDMWNIRLSNALDEI
APRRPLQPRRNRSPWFTEELRSMKREKRRLEGVWRELHDRASRSAYRAFMESYEHATIEAKRVYYASLIESASSRPAKLF
KIIRSLTTVPTNPKSDDQTPSAEAFQSYFADKISLLRRDLPATTDTMRELETPWPLAGPTLDQFIPLDAEGLDRLIAAAR
PTTCSLDPCPSWLVKSCLEGLRDPLLKIINSSLEQGVFPEGLKEAVVSPLLKKPDLDRLVPSSYRPVSNLSFLGKVIERA
VAVQLQQFLDDTAGLDPFQSGFRAGHGTETVLVSITDHLRCQLDRGGSVLLVLLDLTAAFDTVDHNLLTHRLAVAGVRGT
ALNWLASFLHNRGQRVERGGLVSERSPLHCGVPQGAILSPLLFNIYMQPLAQLVRDFGLECYQYADDTQLVLKMEGQPES
VPDSFHQCLEAIIGWLRSSSLRVNPAKTEFLWLGRPGSGDIQLPTLDGEVLRPSSLVKSLGVLLDPSLTMQAQVSAVTKT
AFFHLRQARRLAPYLSRDNLATVIQATVISRLDYCNALYIGLPVSVIRKLKLVQNAAARLLAGVPIRCHITPILRQLHWL
PIEHRITFKVMVLTFKALHGPGPMYLRDRLTPYKPQRSLRSEDQDLLEVPSFKTLRLTATRRRAFSVVAPSLWNTLPPEV
RALRDLLAFRRACKTHLFRQAFEFCC
>L2B-1_AG_pol#LINE/L2 1714-4515 [Anopheles gambiae]
QLQNKQSKNIQMLYMNVAGLSSSHIMLNHIVQTIQPWLVFITETHIVEAEAFEQFGIPGFTAISCLSNSRHTGGVTIFIK
ESITYKILINEARDGNWFLSISATISKKSFIFSLVYHSPSSSNAHFVNLLEWWFDKFLDLGEDNILIGDFNINWLNSAES
KPLRQLMESLNMNQIITEETRITQRSKSLIDHVYCNHNSFIAKTDPTLKIADHETIVLTLQKCNVSLNNKKTFKSWKRYS
KDKICSSVNVNLPITNLCLHDKAHRLEQVIKNSIAQLIDVAVVNNNNYQKWYTGDLQCKKQRLDKRYFTFLKTNSELDWL
SYKTSRNCYLRELRMTKRNYFERKINESKNDSKQLWKLLKSWLQTGSNETGRVQFNDKIIEDESEIARLFNEHFVNSVMD
IHKSIPQCNEPEQIKNMEQTRKRFHFQPIDIQTLQRICFKLKGASGLDDINGKVIRDCLSVTGDTLLNIINDSLITGQFP
NTWKESIVIPIPKINGTIIAEEFRPINMLNTLEKILELVVKEQLVQYLKENKLLVPEQSGYRESHSCETALNLVLEKWKT
NLNKKHITLAVFLDLKRAFETISRPLLINALKNFGIVGQELDWFKNYLEGRTQRTRFKTTTSESLENSLGVPQGSVLGPI
LFIMYINDMKNVLKFCDINLFADDTVVFLSCSSVKEATTKLNEDLASLDQWLKYKKLKLNAKKTKMLVLSRTKTLFNLQI
NIDDEAIERVKEIKYLGVTIDEELKFKSHIDNIIKKMAKKCGIICRLKKDLSVFAKIQLYKSLMAPHLDFCPSILFMANA
GQTTRMQKLQNRAMRAILGCGWYTSSLIMLDTLKWMSVKQRVMYQTMIFVYKLLNSHLPQYLCDRVVRGLNVHDYNTRRA
ADPRVPKVETVSAMNSLFFKGIQTFNMMPRVVCNAETIPQFKRLCATHIKATIV
>L2_Ele3_gag#LINE/L2 660-1893 via tfasty with CR1_Ele15_gag, 2 frameshifts. [Aedes aegypti]
MDACKACGSNLVRSDRSVLCSGLCGSVFHPGCVGLNATNFKAWTATIGLLWFCESCRINFNPSVMDREALIIKTMRDLLL
RVDSMDLRIGQFGENLKTLNSVLSLTTSARRDSDVSTRVHRFLSGTTVHDHTDFYNSINRLNLDSSLHSNAANNTIVFPE
EDQGAMLDDSVSNAPVEPRGVRPKTYASVVSKTTANVTNSASXVTTANIFATTAVTSVSPATTANAISTTTTIANVMPPT
TATSATAYINATLNPAKATGAPTDTIPAFPIMRTTLPAGDSHPTSHASVSNGVPQTNCRLKVVSKHRQTRNRESTEEQLK
SFYVTPFTIEQTEDDIIEYLRETINTNESIVKCVKLVPRNKNINELSFISFKISVSEDLVSLIGDSFYWPEGVEIREFQS
KNEMRSNQMLSM
>L2-4_XT_pol#LINE/L2 188-3430 [Xenopus (Silurana) tropicalis]
MLSLLSLQLSTFFLLLRAKNSFTTFIAPDTVQIAPSLFPSPSLCSHELLSLLRSLIPSPHTTKHKPRAFKSRSHLLSLTL
LLLLAAGDISPNPGPPPKLCSYTHPTPNSCSPSNSHSAHLQKGRNTDNLINIPIIPATPAPISCALWNARSVCNKLAAVH
DLFISRGFQFLGITETWISPTDTVTPAALSFGGLQLSHTPRPGNRHGGGVGILLSEHCSFQPIAQIPSLAFHSFEVHAVR
IYSPFALQVAMIYRPPGATSKFLDDFSAWLQSFLSSDIPAIIMGDFNIPIDTKRSPTSKLLNLTFSYGLKQWVSEPTHQD
GHTLDLIFSHLCSLTNLLNSPFPLSDHHLLTLTLSLSHTTLPPPNPTARRKNLHHINLQHFSSTLQPVLSSISSFTDPEP
AASFYNHTITTVLDNFAPLSTHHPRRTNRQPWHTKHTKQLQRQSRRLERRWRKNNSRSNFDHYKNALHNYRDALSSAKQS
YFANLISTQSRNPKQLFNTFNSLLHPPTQPTAASSITSEDFASYFIDKIQKIRTEINRNPKDITLSNIPSAATFLASFPA
LTEETVSLLLSKAHLTTCSLDPIPSHLIPPLSPIFTPTLTSLFNLSLSTGIFPHSFKHAIIKPILKKPSLDPTLPSNYRP
ISLLPFSSKLLEQHVHNKLSHYLTSNSLLDSFQSGFRPHHSTETALTKVANDYLLPKQRATTLLILLDLSAAFDTVDHSL
LLHILSSLGIQDKALSWISSYLSNRSFSVSHSASTSTPQPLSVGVPQGSVLGPLLFSIYTTGLGQLISSFGFHYHLYADD
TQIYLSSPDLPSLLARVSNCLTAISAFMSSRHLKINMDKTELVIFPPSNSVSLPDITVCVENINITPVPQARCLGVTFDS
ALSFTPHIQTLSKSCRFHLKNIARIRPFLTHETAKILIHALVISRLDYCNSLLCGLPLSKLTPLQSIMNSAARLIHLSSR
STSAAPLCQSLHWLPVTYRIQFKILVLTFKALTGAAPLYLTTLIPKYTPRRNLRSTHDLLLSSSLITSSHSRIQDFSRAA
PILWNALPRPIRHCQTLQAFKRSLKTHLFTQAYNLNPPNIH
>Kiri-5_CQ_pol#LINE/L2 178-3017 via tfasty with L2_Ele3_pol, 1 frameshift. [Culex quinquefasciatus]
MTNTVNNVQELRFEPINATLKNNLSKENGFKVGHLNTCSIICHHDDVKNIFTRTGFDCIGFTETWLNSDIKDALIKFDNF
EILRHDRNSTTRVRGGGVALFVRPEYKTKIIKTSPRDSIEYMFCELNSSQLQVVVGVIYKPPTLKDFSFFFEDLGNISST
YNNIILMGDFNINILVSNPMSNNFTRLINSFSLSIVNKSFPTHFHNTGSSLLDYFICSENLQSTLFSQVSVPAVSHHDLI
YTVFNLPVPVASLKTISFRNFNRIDKEAVRNDFPNFNFDQLNGIVDCETLASNFNHKLIQLVNKHAPLKTKTILPTSCPW
YSREAYNACVDRDLAYRFWKNNRTLENKLIYNRFRNRATNLIRIAKKQYSAKLFDPTLPSKTIWKNFKSLGFRDDPDNLD
DKFKPEDVNNCFIQKIENYPTGNRQPTIIPDIVEEDQFKFRAVTEDEVHKAILRIKSDAIGYDEIPLKFVKLFLDLLVPY
ITLLYNKIISTNTFPTIYKLAIVKPIPKIKNPSNPNDLRPISILPSLSKGCEILLKDQIVQYVTFKKLITPFQSGFREHH
STSTIITKVCQDINASFDSNYVTVLILLDFTKAFDLIDHRIFIDKLKEQFQFSSDACDLMKSYLSDRSQLVQINGVRSQF
RSTKRGVPQGSVFGPLAYTLSVNDLPSFITHCNKQSFADDTQIYLSCPVDQLPNKISLINSDLSAISRYCKDNGLVLNTS
KTKAIIFSRQNTVLPHLPPIQIDNENVEIVDECLNLGIKMNKHLTWEDHVSLIKKKVYSTLRTLNCHRHTLSIDTKIKLV
HTLLMPHFIYGNVIFSKMNVDTERHLQVCFNSCIRFIYNLRRFDHVSQFQRSIFDLSLSKFYQFQLLLFLFKLINFKEPQ
YLFESLVFSRSNRTNNIIIPVHHTNFMGNSFAVRGARLWNDLPHNLKSITLFSEFKRRCKEHLKNSI
>Kiri-4_AAe_gag#LINE/L2 361-1128 [Aedes aegypti]
MSQLWLRSRTAEMSKLDSKRKEIVHGSSPSNEISNNELARLITNQGKTMQDQVNKLGNDLRAEFSKGMDEIKADLVEVNS
KLCCMRQDVFDNANAIARSNLSNDLIISGVPFTENEDLLHYFRCWCKTMGYADGNVPYVDIRRLSRTPLNAGNIYFILVQ
FAITNQRNDFFSCYLRNQSLNLNQIGFQTNKRVYVNENLTPTARKIKSKAIELRKAGKLAKVFSRAGEIFVRSKEIDQDV
IIKSEEDLRRFEHLGG
>Kiri-9_CQ_gag#LINE/L2 248-982 [Culex quinquefasciatus]
MSFKRSREDLTKSDSEDEPVQSLDQLFSRMKSMFEETNERIECCKTDLQSEFAVLRDDMQQFKAECTNNVNKLSAELSKT
QDNVSLNYERILICGKLNDLLLSGVPYQSSENISNYVRSVSLALGYSDQDRPLIYTKRLARLPIADGAAPPLLLQFTFRA
ARDEFYRRYLSSRNLSLSHLGFTINKRIYLNENLTELARAIKGSALKLKKDGKLHSVFTKDGFVQVKTRAEDEARPVLSM
EQLTN
>L2-2_XT_pol#LINE/L2 723-3932 [Xenopus (Silurana) tropicalis]
MTKLTSFLLIVCMVLPKVVSSFNPPVACPYSIHISSSLLPSTYSGSFTLYNYLRHLCPPVTVRMRRRNHFKSSAHVFSLL
FLLLLAAGDVSPNPGPCSIPTYIRPRPSVPMPKTCRSAVSNLIQVPTLPSSCLPFSCALLNVRSLTNKATLIHDLFCSKS
FHLLALTETWLLQDDTATEAALSHGGLSFSHTPRTTGRGGGVGILLSSRCRFAPIPIPPAFSFNSFEVHALQIFHPLSVR
VAVIYRPPSASSPATFLSDFETWLSFFLSTDGPAIILGDFNSHIDDPSQPWPSRFLRLTSSFELQQWTNAPTHKDGHFLD
LVFTKNLSLSDFNSVPFPFSDHHLVTFSVSHSPSQPAPSPTVLIRNTRDVDLPALARSFRSSLSSFNEMSDPDTLVSEYN
SILASTIDLFAPLQPKRTRVQNPRPWLNVHTKFLRSCARSAERMWRKSRTQADFIHYKFLLACLNSALSKAKQEYYNTLI
NNNKSNPRRLFSIFNTLLRPSQTPLPHFMHSPQDFADFFMNKVESIRNQIPPSTNTNQLLLPQPPSACLSSFGPVTVSEV
SRLLLSAPLTTCSLDPMPSSLLKHCAAELTPALTHIFNSSLTSGSFPSSFKQACVKPILKKATLDPSCLSNYRPVSLLPL
ASKILERIVFSRITNFLNAHNLLDPLQSGFRPAHSTETALCRVTNDLQVAKAKGHFSILILLDLSAAFDTVDHSLLMQIL
HSIGLRSQAASWISSYLSNRSFTVSYANKTSSPVPLNVGVPQGSVLGPLLFSLYTLSLGDLIRSFGFKYHLYADDIQIYF
STPSLTVETETQISNCLLAISNWMNQRHLKLNLTKTELMIFPPKPGPTPPFSISIDGTLINPVDSARCLGVIFDSSLSFS
DHINTTVKTCHFFLRNIAKIRPFLSTATARLLMHALILSRLDYCNLLLTGLPNSHLSPLQSILNTAARILLLSSRRVQAL
PLLKSLSWLPIKQRISYKLLLLTFKALHSSAPHYISSLVSPYVPGRLLRSSQSNRLVAPPTTTAVSRLKPFCLAAPYIWN
ALPDFLRRESSLSLFKTKLKDYLLEHSPST
>L2-1c_Cis_gag#LINE/L2 77-778 [Ciona savignyi]
NRKMESLLMEKLSKMEETMLAFKGKQEGLEARFEKEPDTAPSLNIAGSSDRRKEILEMRSSLNALEASFKELKALIERTD
ERLDGLEQYGRRNCLVLHGCQGIPNNRDQFLKYILNXFNKMXLPYPIVPAEIDIAHVLPTKENRTPIIVKFVRRMVRNDI
FNSKRCLKGTKMAITESLTARRLRIVEKAKEVFGFRSVWTXNGAVYIMHNNKRQVLHRLSDITNILASTPGST
>L2B-1_CQ_gag#LINE/L2 267-1607  [Culex quinquefasciatus]
METGEGKGGGTNHPCAQCSQPISETDHCVECFGKCRLSIHVGCVPRATAESIELLGQLPNAVFVCDACYALHDYGDDGHT
EKILSDVVAKLDELSCMIDFVKNFDSAVRNVVREEIARDRKTSTASGNKDGTRNRVITRSESKKRKAEEAEDSESKKMRA
EEVGDTVTEFVTPKASFAKVVQQRIVLSEEEQKQKQTQKPDPVVVIKPKEGVEVENARMEVQKKVSSKNLNVQRVYTNKN
GEVVVALKDEASVQVLQENVKKQLGERYDVRLRDSLKPTVKIIGMPEELEEDELRETLIDHNDSFANLKHFKLCRSYRNE
KWSYDNNNAVVELDADTYFKVLDAGKVNCGWKRCRVFDGLQVLRCFKCNGFNHKGADCKAAVVTCPICSGPHELKDCKAE
REKCSNCEKLRSEKNADVDVNHAAWSSECPVYRKQQQRRNKLVDFTL
>PENEL1_NVi_pol#LINE/Penelope 581-2722 via tfasty with PENELOPE_SM, 2 frameshifts and 4 stopcodons. [Nasonia vitripennis]
MNFLKLKSEKLKEHLQEIIPHNVISIFEDLNNDHGDKLNKIKKFSKHxRQIRTPNRIAKNGFKISSIxTYQPIYNLxRHx
DKNLIQKVNLSDTKTIECIKNIENLITYNNLSDKTANDIRNILIKKITQHRHKTKHIKIEETILRKNYKTLKILLKITKN
IMFTLADKGNVTVAMLRSDYIEKMELQLSDRNTYTEIAKNPLSKIQNKVKKFMNNWNTNGFFGKKYSKFKFTQTDTTLPK
CYGLPKIHKKDIALRPIISTIGSPTYFLSKSLLKILQNSIKKPDSYVENSYDFIEKIKNVVVPPNHRLISLDVKSLYTNI
DKSLVKKSIEKRYIQIVQKSEIPLNEILLACELLMENTFFQFNGKFYKQLFGTPMGSPISGFFADIVMDDLETDCLSKLS
FKPTFFYRYVDDIITCVPNDKVDEILKTFNSYNNRLQFTHETEIDNSISFLDVLLIKDNDKIVTDWYTKPTFSGRFLNYT
SQHPMSQKIAMVYNLVDRAIKLSNKKFHNKNIQNIKKLLHENHYPPAFVNKYIRKRMSTLTSNTLSRQQISSNEKRNIVS
LPYIQGFYEQTSHAFKTLNIETVPKINSQMKNIIIKGKDKKDKDLENNVVYKLECNDCSATYVGQTKRNVCIRINEHKKS
KNTVISDHVNNLNHTFNFENYHIKDREINLNKRLVSEMLHIHLQENGINKKEDTQNLNTVYTHLIHQLKTKQT
>LOA_Ele6_gag#LINE/LOA 3-1424 Fragment [Aedes aegypti]
FKKLLLSGHGREEALSMVLVPPKESTPKRPRNINNSSNSDSKPIPKKQKGQSIHISVNSRMENIRQDQPTALENQQSTYS
EVAKWVRVGILPKNYPQIQLTDEQLYSLQEAILLKVTLQRRESFKPKFTNCWQRTGHLVINCQDRETSDWLNSVVPTLIP
WKGAELTVVNADDIPRLDVMVGFFPQSVNDENDTIRVFIESQNDGLSTDRWKIIQRNILYENHVEWFFTVDEASMQHFKT
CNFLINYKFGQTKLRKKGMYKPGVDGMVISRDEPKELEPVSSVDPGTEQSLSVPVTSGTDGKVPEAKSSKNHHQSTQSTG
LPKNENSQGKFDDRIYSGPSKNSNHFGLQVDVQCPGLAKDQQCSTILMDQKSSERSKDRNTFGLPKDQSGYQKDQNYSGR
LKDQNAAGPSKDRNCSGSQRDRNTSGLPMDRNTSGLPKARSRSGHIKDRNSSEPSKEQMPSGPEKDQHSRKYK
>Penelope-1_Gav_pol#LINE/Penelope 3-962[Crocodylidae]
KPVIHSQALRSRRICTEENTRDCYLTNLKKAFTQQGHSSREIDAHLKEPPGYHVKNLLQCRRKTPTNRTPLVMTYHPSLE
PIWKILKQLQPILEGDPILKEIFPDPPILAFKQALNLANLITRSKLPTAQNTPNGSRPCHEKKCKTCQHISTTPTITTPH
NRTITIPGSYTCTSRNVIYLIQCTKCPDGKYVGETKQQLLTRMNAHRKSIKDQNTQLPVGAHFSQENHSLSNLSVLILKG
NSQNTFHRRAYELHFINLLDTKNHGLNIEEIQKSRTLGSKMIPFIRPTGKSQENCPFLQAFGLKGPSSGSEKSIDGKKSP
>Penelope-3_CQ_pol#LINE/Penelope 1685-3532 Fragment (TIR to pos 1685) [Culex quinquefasciatus]
AKATREFLRTRKELVVLKADEGNKTVIMNGNDYKSKMLALLSDAKTYATANRDPTSSIQSKNDEIVKRLKRLDAINDRLE
NELMSRKALCPRIYGQPKAHKAGLPLRPVVPNMTAPTYALSKFVGQILQSSLQSTYNVRDSYSFCDYINGITLPADYVLV
SLDVVSLFTCIPFELVRRDVTFNWSDIQKHTDINLEIMLEIIEFIMKSCYFTFEGKFYSQIFGTAMGNPLSSPLADLVME
NLMHAVVKKLDFQPPVLKKYVDDLIVALPLNKLKHVQDSFNSYSQHIQFTYELEENRRLPYLDMVLVRTEAQQIRTEWYR
KPISSGRFLDFFSCHTTSQKVNTAMNFIQRVDKLSTNLNTREKMKIVDRELEINHYPKPLRRRLINCQLCNRSSNGNQQQ
QQQTQQAEPSHQQTNICYRSIPNIPTLSQTIAKTLKQDYPEVRLAFRNTNTVGSSFFSNMKDKVPTENHTNVIYAIPCNE
CESSYIGMTTTQLKTRMSSHRSDIKRLDELLQAGHTTDDYKIAELRQKTALLEHSIAKQHSFDTKKVRILDQHNRGTALP
ILEMCHITNNNHTVNKRTDTEGLSIIYAGLLHTLKTKNYKHRKPNTVTPGETEQE
>Penelope-1_SP_pol#LINE/Penelope (2-847) via tfasty with Bridge2(Xena)_1-139, 2 frameshifts and 1 stopcodon.  [Strongylocentrotus purpuratus]
HTDQYIAFDSHHPISVKRGLVKCLFDRASRIVTSPQQRMQRRTRVRSALSLNGYPRRFIHNTKNRSSEPRDQKVYKTFTV
LPYIDGVSQQLKRRLESHGIRTVFRSDTTLRQQLTRPKDPIPPHRRDGIVYNIPCKGCDRSYIGETARPIKERITEHKRD
VRLRRTDNSAVAEHAWDNQHQPDWDGVQCLSQERHWYTRRVKKAINIRLNPNNFNRDNGIDIPEFWMRTIRRHDTRRPAS
QQRSIPFSRRPEPAXPLIGxVPYASANRPGASANQRPNQRPC
>LOA-2_DGri_pol#LINE/LOA 1610-5203  [Drosophila grimshawi]
MSLRLRQVNLHHSKAASAALMLRLAGGGDDIVLVQEPWVIGGKVCGLGNKNYKLLVAGNEGKKRTCILAKKHLNIFLLHN
FSNDDNTAVSLELQSASVRLLSVYMAYDSAGPPPDETTRSLVQECEKHSIGLIIGCDANAHHTQWGSTGTNPRGESLLSY
ILNTNLLVCNTGNEPTFIIKNRREVIDLTLISQSMSDQLIGWRVSDDHSFSDHRYIEFELLASHPEPVHFINQKKANWEI
FKAKLDRTLSEHPPKGPDNLAHLCNLTETFTSACNKAFKAACPISKPVHKKKPPWWTPQLNVLRQSCRSLFNAAKAQNND
QQWSKYKSSLAEYKKATRREKRKSWRDFCTEIDSTTEAARLRKVLSKTTPALGYLKKDDNSWSVSSEESLEILLNTHFPG
CSEQTPRCAETSGIESTVLKSLINKNNIKWAVNSFKPFKSPGPDQISPVQLQKAGNTAINWLHEIFGKILKTGCIPPTWL
QSKIAFIPKAGKPSHTSAKDFRPISLSSFLLKTLERLISLHLTASIDPRLMSESQHAYRKGRSTDTALHSVISIIEKSLL
YKEYTLIAFLDIEGAFNNVTPAAITAALLNLGFDTGLVGLISQLLTCRTVTSTLGSSTLSRFVSRGTPQGGVLSPLLWNI
AINKLLWDMEGGGCKMVAYADDVAVIFRGKYPQTLCDLMTSKLKILSCWAQESGLGVNPNKTELVLFTRNYKVPSLVPPR
LNNVNLLFKDSANFLGLTLDRKLDWNLNTQTRVKKATVALYTCRKSIGLKWGMSPNIVRWLYTSIVRPILLYGVAVWWPC
LKKKTTLSKLNKVQRMAELCISGALRTTPSEALDAILDIPCLERQGMENATLTAIRLRESLAWTTQSTGHASILEGKPTI
PSKTDYCVPVTQLGTPFNTYFPQREEWVHGTPGPPATITFFTDGSKLDNRVGGGVYSEQLNLQLSFSLPTHCSVFQAEVL
AIKEALDCLDRLKVSPGYINIYIDSQAAIKSISSISSNSISVTSCRKSLHEMAKQHVISLIWVPGHQDIEGNCKADELAR
KGTILPLLTDKEGISMPLATCKLNIREEHRRRSCEKWQNATCARIAHQTWPIIDSKRSKELCSLSRTNCSAVIRALTGHW
LVGIHANRLQVPHNDFCRSCKEEEEVESPEHFFCLCPALARKRLAILGNYSLNSLSELRYMRLAKIAKFINASGWANI
>Sake_BM_gag#LINE/L2 290-1933 matches REP_Tth_pol#LINE/L1 check.  [Bombyx mori]
MMTRSIKSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEALEINQKLQDTINT
FSQCSDEFCDSLKITAELRHKLAEADDCISDLRSELCKLKEQQPQSLYSELVKSEPSLVAVDTALNFDITTIDLTGSDAE
TSERSQLVLSKNKVRKYVKINKLIYKTQRKLRNYKSQEYIKFICKQRTSLSHQVAVLTEQSQQIHHKHMEEIECLSTQIN
NLKSSLENITLNYELAQRDISEHVLAMDNLIDTCNYNQQRFDSLTMQYAECKCSASGCQELPHVEIQKHNVSILSVLESQ
SNDIMKAAPICIPTTASSQVSREDKIKIKIFSDELGKQMGVALHDLCFGQHVINYCMPGANPAQIFDKILNTTHCLNTVI
IIMLGRRENVNQKQILHYVEQVNMLNIKKIIMFTFPYLQDLPTENKIRFNINNAIYNAFDNNNCILTSKKYAFKLIDINN
IIKFRYLRTSKNDIFKLSNKNFRQVATSLQYFIHNFLAINLAKKIPASIEQEKNMTCFKTLESASNLN
>L2B-1_HM_gag#LINE/L2 126-1334  [Hydra magnipapillata]
MTKTKKHLSPHNADKLDEDSDHSISNLKTSVFNCIECEISIHGKSVECGVCKEWCHLKCSKLTNDDFNAITKLKKSRVIW
FCFKCEKKLVKMNKNDKKVKYTFIKELYTDNKILNKEITELKIENELIKKELQDKIKIKQIPIISSNVNSISERTFSEIV
VKKINNHDKINTKKLIMDNIKPKELGVEIQHIRNQNNEVIIRCNDEKSKDKLYQEIKGKLGVNVSVEKGNTEKMKRIEFK
ITKHDEVFNEILANDIIALNNLNNKAKVIVVKRINMTKNKYELVIADIDINTYEYIINKKNGRLAIGWESVQIRKHINII
QCYHCQGYNHIAKNCHFNTPSCCYCSGDHYSKDCQNHESNWCVNCLSKNKKFNLMINPQHCAFDKKCPVYNDIKNRVELK
YDN
>Loa-1_DBp_pol#LINE/LOA 1781-5251  [Drosophila bipectinata]
MSLTILQINLHHSKAASAALLLHLAESGADVALIQEPWILGDRILGLGASEYRLCKADTTGKRRACVLAKKNLNLFLLPN
FSNEDHVAAAIESPNGPLRVCSAYMGHDQEALPPHPLLKQLVEDSRKHKIDLIIGCDANAHHHQWGSTDTNERGESIFDF
ILGSNLLVGNRGTEPTFIVKNRREVLDVTLYSDSLADRIVRWGVLEKHSFSDHRYIELVVNFENFNRLTVRNPRKANWEL
YRKKLESSLGKPPTRDVDSREALDAMVDTLTAACARAFNKACPKSRSGNSKSKKPPWWSQTLAPFKTKARKAFNFASKTN
SETAXETYKAKLRTSSSKETLEALTEAHFPGCSLEXTTLETQRQGDSPSLPNQLEYLLSDRYLSWAINSFKPFKSPGPDG
IVPAQLIKAGPNLRSWVKKAFSAIFRIGIVPAMWLRTKVVFIPKAGKPSHCTPKDFRPISLSSFLLKTMERLISLHINLT
INPDDISGSQHAYRKGRSTETALHEITTFVEKALSDKEYALIAFLDIEGAFNNILPSSIINALTGLGIDNQSVRLIEQIL
VNRTVEASLGGESIHRYVRRGTPQGGVLSPLLWNVAVNSLLRSLEGGGCKVIAYADDVAIAFSGKFPQTLCDRMTDKLRV
LSTWAVRNGLGVNPSKTELVLFTRKYKIPNLRLPKLSGETLSLSGSAKYLGITLDRKLDWKSNTMDRANKATIALYTCRK
AIGLKWGMSPKIVRWLYTAVIRPILFYGVVVWWPALTNSTIREKLRKTQRMAEVCITGSLRTTPTDALDFILDLLPVEIM
GVKIATLSAIRLRETGIWKWTDYGHTKLDLHHCTPTGATDYCVPVDHPTLKYKVSIPTREEWATQIPGPAGSLHIYTDGS
KLNGQVGGGFHCERLCLNESFRLPDHCSVFQAEVIAIGEALRSPALTGNQETICIFSDSQAALKALDGFSSNSRTVNDCR
RSLNEMAEQYDIHLIWVPGHRDHEGNCAADELARAGTTNPLLPEKEPVGIPLATCRLKCRDHFDRASLRKWRNLQNCRNS
RMIWPIRSRKRSMMLIALNRQDCSLAVKAITGHWLIGAHAARLAVPHYDYCRSCGDVEEEETVAHLLCQCPALGRSRLKF
LGAAILTDLTDLAEIAPRRLVAFIRKSGWDREPPQEG
>LOA-1_DPer_pol#LINE/LOA 1772-5389  [Drosophila persimilis]
MPTLQWWRTLRMSLRLLQINLHHCKAASAALILRLEESGADVALIQEPWIVGDKVCGLGSKEYKIIVAQHEGKTRTCILA
RKHLNIFLLHNYSDSDNTAASLELKGTHLRLMSSYMAHEGNDPPNDLVRKLASDSERSDIDLLIGCDANAHHTQWGSSNT
NVRGESLFSFILNSNLFICNRGNDPTFIIKNRQEVIDITLVSSNLLDIVKSWQVLDDHSFSDHRYIETTLSLECPKPKDY
INPRKANWEKYSSALEDLLPSKAPSCPDTKDDLDRLVNRFTEACNKAFAAACPSSKPRGKKKPPWWSKQIDILRKSCRTL
FNRAKSANEESHWADYKISLSLYKKETRKAKRASWQKFCSEIEETSEAARLRKILSKTNPSVGYLKRNDGTWTNSSEESL
HILLDTHFPGCTTIETAHLPGEGPVTSMDHILTKRNISWAINSFNPFKSPGPDQVIPAQLQKAGDTAINWLQGIFRKILA
VGTIPRTWLKAKIVFIPKAGKASHSAAKDFRPISLSSFLLKTFERLVGLQLRTTIHPQLLSGAQHAYRKGKSTETALHEV
ISAVEKSLHHKEYSLIAFLDIEGAFNNVVPGAITEALTDLGVDRHLVMLIDQLLTCRTVTSSMGSSAQSRYVNRGTPQGG
VLSPLLWNIAVNKILWDLEGGGCKVVAYADDVAIIFSGKYPQTLCDLMSTKLAQLSDWTESRGLGVNPSKTELVLFTNKY
KVPPLNPPILQGCRLSFSDSASYLGLVIDKKLSWNLNVKDRVKKAMTALYTCKKAIGLRWGMIPSIVQWIYQAIVRPILL
YGVTVWWPALSKRAITKQLGKVQRTAALCISGALRTTPNDALNAILCLQSLELAGKERAEAAAIRLRDSDQWVTQCIGHS
AILNSSTVPSKTDYQVPREYTDTPFDTIIPHRDEWLEGLPGPDGAISIFTDGSKLDDRVGGGIYSEQLNIRHSFRLPDHC
SVFQAEVIAIREALDCLQAAAVTATKLNIYSDSQAAIKSLSAISSNSATVADCRKSLHEMAQQFAISLIWVPGHRDIEGN
CIADELARSGTTIPLLQDKEDICMPMATCKLIIREQYKRLKNDMWQTVPRCRTTRQTWPTMDMKRTSELLKLSRKRCSVV
TRSLTGHWLIGTHANRLGAPHNDFCRSCRDEEEEETVEHLFCSCPALSRRRLQHLGSAFLHDISEMSKLCPRRIANFVRA
SGWDNC
>LOA-1_DPer_gag#LINE/LOA 502-1842  [Drosophila persimilis]
MEELKNKQNESGTPQMPTGSNPKQGKAAAQRPGPTRKSAGKTCAAEDARESPKGSHPGVGVGGELAPKTDTLAEWLCNPA
AALPAGKVXGDESPSTSVKAKSFTYADRRSAGNILRRQNASQMSSPTDKWIKKVEWASKVLPNFGKEAPKKEAPQQKRQR
SQETPGPTPKRSRVLPNASFAQIARERTLIGVLDKGSVDSRIPRNQWKWVEAALADRCFELLEKQPGPPPPVCRDMGWYQ
GCIKIVACEDERSVQLYKAAVAQVGEVYPGAKLVAVDWSEVPSRPRARVWVPASMKEPERILKMLQRCNPHLPTADWKVV
KVETTQGPTNQAVVVLNKESLAPIEAAKGELNFGFSSVTVKVYKSDAAAEARPVDKPVEQDAASEIEAPDDHTEIDPEGY
STDGTLRCDFEAMCCHEEVEDDPDADITVVENTKDVPEAPSDQSPPL
>RTE-8_SP_pol#LINE/RTE-BovB 435-3587  [Strongylocentrotus purpuratus]
MRNSMKLHTGSVVFRVNKDRAVRSGLPSTVPSMLGXKQQQQKDDTSGITTMTFGQWNVRTLLDREGTGRPERRTALVAME
LEKYRIDIAALSETRFSESGRLDDMGYTFFWSGKPDGVRREAGVGFAIRKEILAKLTEMPKAVNDRIMTMTVPLTKKGNA
TLISVYAPTMTSPDETKENFYNQLRRTLRDTPRTDKLILMGDFNARVGRDYEKWQSVIGRHGIGKCNTNGELLLALCSEF
ELLLTNTVFKQREEHKTTWMHPRSKHWHLIDYIITRQRDRMDVHSTRTMRGANCLTDHQLLRSKIAFALRSKRRKQGATK
LAKLNTDRLHVNTQRLNLEQDMEKALTNWGVQEGMTVDQTWASLSKVVYETASNTLGKPERKHQDWFDPEDSELLILMKK
RDETHQRVLQTRSTRSTTTAYKEACRHLQRYTRKMKTTWWEKKAEDLQRSADNNDMKSFYTGLKEVWGPQTRSTVHLKSL
DGNTTFSDNKRVLERWSQHFETLLNQPGDIEPAARDRINQRPVVTALDDIPTRKELNLAIASLGDGKAPGVDGIPSEIWK
HGGATLTNSLLMLIQQAWAEGSVPQEWKDANIVTIFKKGDRTQCGNYRGISLLSIAGKVFARILLNRLNAHITPDILPET
QCGFRNNRSTVDMIFCLRQLQEKCIEHNRSLYVVFVDFTKAFDTVGRTGLWQLLRKYGCPEKFTGMIESLHTGMMAKVKE
AGETSDSFPVSNGVKQGCVLAPTLFSIFLSAMLEEAFADFEEGVYIQSRQDADLFNVAHFKAKTKSTQILVRELLFADDS
ALVAHTPEQMQHVIDVFSSASKKFGLQINIKKTEVLFQPGTDHREEEEILVDGTALNQVDDFTYLGSTISKDGRIDSELV
KRMSKASSAFGRLRTRLWNNHHVSTRVKCKIYRAIVLSTLLYGAESWTLYKSQVKKLHAFMMRHLRAIMRISWKDKVTNK
EVLERANLPSMEDLLIRKNLRWTGHVIRMPSERLPKQVLFSQLPAGERGIGRPRLRYKDTIKRNLKRRQIETKTWTTAAG
QRAVWRTAVK
>RTE-7_AMi_pol#LINE/RTE-BovB 799-3939[Crocodylidae]
MCPGLTDDDDLQYTSSIRKSVLIDRELYKLNVDIAALQETRLADAGSIQEANYTFFWQGKSAEENRLHGIGFAVSNKLVK
LIETPIGKSEHIISLRLQTTIGSVNIISAYAPTLNSSPEEKDKFYDTLHQVVKGIPSTECITNSYFAGKDRHKVSWRHPR
SGHWHQLDLVIVRRKDLPSVQKTRTFHSADCDTDHSLIISKVKITAKKLHRAKPRSKPKINTTNTKNQRKCQEFVKAFEL
SMFGKSLPEKAEEIWEGLRTAIHETAKATFGEKRPSNKDWFEENAEELLPLINIKNTAYLEHNKKPTVSTKARLRHAKNE
VQRATRRCANQYWTKLCDEIQTASDTGNLKVMYDGLKKALGPTVNKVAPLKSRSGEAITDRSKQMSRWVEHYSELYSQER
NITSESLDQIPTLQVMPELDVEPTVEELSKAIDSLSSGKAPGKDGIPAEILKCGKESLLPYLHQLLLKCWKEGEVPQDMR
DANIVTLYKNKGDKGDCNNYRGISLLSIAGKAFARVILVRLQQLASRVYPESQCGFRAGRSTIDMIFSLRQLQEKCREQN
RPLYIAFVDLTKAFDTVSRAGLFAVLEKIGCPPILLSLIRSFHDNMKATVQFDGSTSDSFEMKSGVKQGCVLAPTLFGIF
FSVLLNCAFKDMEGGVYLHTRSDGKLFNLSRLKAKTKVRKVLIRELLFADDAALIAHDEDLLQELMDRLSRACQAFALTI
SIKKTVVLGQGVPQDPSITLNENQLEVVQKFSYLGSTVTTNLSLDEELNVRIGKAATTFSRLTKRAWNNSKLTIKTKMLV
YKACVLSTLMYGGETWTTYAHQEKRLNSFHLRCLRRILNIKWQDKVTNAEVLQRANLPSVTALLKQRRLRWLGHLSRLED
GRIPKDMLYGELSEGTRTTGRPKLRYKDTCKRDMKAFGIDPGQWETLASDRNKWRHRLHQGIKVHDRNWLQQLEEKRVRR
KQAAPEPPNHDTYICNHCHRSCKSRIGLFSHMRHCKPSTS
>RTE_Ele3_pol#LINE/RTE-BovB 306-3350  [Aedes aegypti]
QPTVPETSKNVQETDRERLRTDLTATTFSAKQRTRIGTWNVLTLAQQGKLAQLANEACRMKLEILGLSEVRWPNFGEHRI
PSGQILLYSGLRGEHAPRHRGVGFLLSAQAYAALMKWEPINERIIVARFRTRVRNLTIVQCYAPTDAAELQDKENFYSQL
NAVVDKIPKGDIKIYMGDFNAKIGSDNSSYEPVMGRHGLGEMSENGELLAEFCGNNDMVIGGSLFPHRPVHKVTWVSRDG
FTENQIDHICISRKWKRSLLDVRNKRSADIASDHHLLIGEVRLRIARIRRQEERVGRRFNTRRLEDATVKRSFVEELETX
AANISEGGSVEEQWTAIKNAFITTSENNLGELRTRRKQWITDETWRKIEERREAKAAIERAKTRGAKALSRQRYSALERE
VKRSCRRDKRAWADSLADEGEKAAATGDIRLLYDISRRLSGAKMNTTMPVKDTTGQLLTDPTDQLKRWFEHFEQLFQVST
RPPTPQHDPPRVRRISRVNTEAPSLHEIETAIQSMKSNKAPGVDRISAEMLKADPAISAQLLHQLFRNIWDTATFPADWM
QGVLVKVPKKGDLTVCDNWRGIMLLCIVLKVLCKVILNRIQEKIDATLRRQQAGFRAGRSCVDHIVTLRIILEQVNEFQE
SLYMVFIDYEKAFDRLNHENMWGALRRKGVPEKIIGLIEAQYEAFTCRVLHNGVLSEPIRVVAGVRQGCILSPLLFLIVI
DEILIGAIDREQNRGLLWQPITMEHLNDLDLADDIAILAQRRSDMQSKLDDLAERSSAAGLNINVNKTKSLDVNTAGPSS
FTVAGQTVENVENFQYLGSQLASDGGTKIDIGARIKKARAAFASLRNIWKNSQISQRTKIRIFNSNVKSVLLYASETWCV
SAENTQRLQVFINRCLRYIIRAWWPHNWISNADLHRRCHQQPIQTEIRQRKWGWVGHTLRRGGNEICKQALEWNPAGHRS
RGRPRGSWRRSLNKEIKEVDGNLTWPQVKAIAGNRPGWKSFTSALCTRMGAQDP
>RTEX-2_BF_orf1#LINE/RTE-X 234-2912  [Branchiostoma floridae]
MADNSEELYRTLGVASNASKEDITEAYKKEVANYENASKLGRKEPLFKEADTRYREVSKAFVVLADAARRQQYDAGLPAS
NSTKTVKISKERTDYQVQINKQSVTIYLPNHLTNPWLKTCEEHYRTLATVGDKEENGHQIKTSFVDTRSGQPVGSVSIKF
FETTQKLLIQGSAYLLWFAEDYPELKKTVTSLSPNNSNGNAHIQASMPDPDANSTPASPASVAVNLPPCPTCQEPVESDI
CACNTVPKALLDVNSNNVNGTESQTGPTGDHDEFNMANTSVTPDYSIVQESMTKLETCLANCITDKKLFEDSVMHKLSAI
EARVKSCERPHTCDGFTTEEKERLSSEISRLDKEKRELELKVKSLEQRHERLSTAVRKAEATNLKRQTSTVETQTSESNS
DRAERLLHEATISVHNRFQVLDSNDGISHGSVKHSNNNESSCLPRRAHSQPNQSPRETRRTHCESNQPPCVTRDRKSSQH
DTMANNQHIKARSNQQNNDAQLDLLILGDSNTRPLKTDILYPNKRVTKELTFNLREAIDYIQTSTLPDPKTILFHVGTND
VRDARDPTTVSEGFRELVQITHDKYPQSHIVLSPILPRDDPNLQAIGDNVNAFLKVVADETSYVHIIDNSNFSYSGTTSI
KKSLYNSDGYHLNRNGTRVLAANIKRTVNSLIGLGQYLSRGSQPVACDQFATSPKRTTPNRSYRDAVLGAPAGGPPEPST
RSCPPPHTQPARKQEHSSAPSQDRRSSNHTSSDDPVNGSSDRCPAPDRRPPPFGLHPPVGPWGPPPAGPWGPPPAGPWGP
PPAGPWGPPPVGPWGPPPVGPWRAPPHLPPPSHQPGPWGMSPFFPSPSHLLGKSGRFPDSYPCSAQNSKQQFQPPAWLWQ
PGTPWRGPPSMW
>RTE-1_PPac_pol#LINE/RTE-RTE 100-2898  [Pristionchus pacificus]
MVLPFFLATMNVLSLATDGRLTLFDQAVMKIKADVIGLCEVRRKEEGAIDLTSSSGTLYHTGRFGNRSAGCGFFVSRRMK
PKVVRFLTISPRIALLDCRLPNNVLLRLVQCYAPCSNHSDDQYDAFLSELESVFRQVVPGQRKFRKVYRVIMGDLNARVG
KALPGDTAIGKFGYGDRNDRGEKVITLCETLRLRIGNTMFQKQESHCHTWVSPTGTTTTRIDYILYPRDFPALDVDVVNR
MDFTSDHRMVRASFSVEGRPLGHRGGGKNEVVLVRDQFKDNLVRSIEGIPVGCDYSTLVSSIQQAATLSSTPAPSVPRFS
PRTRQLFAERSKIKATVQGRDRVQWVAINKALRGSLQQDAIDRMTRMVEKAVEEGKNYSKAIGSQSVGRERIVKMQGGKG
IVTTQADLEGVFREYYNKLYKGDGGRNYTVRETEEEFIPIGRDEVESVLRGFTSGKSPGEDRVSGEMLKAGAEILSPYLT
AIFNKILIEGFIPQGFGDSRTILLFKGGDKTLPKNYRPISLLPVIQKTLTAVINNRIGCSLDNLRAREQQGFRGGHSTVD
GIFILNTLIANCREFKRPLYLLFLDVSKAFDSVLCDSVLTAMERDGVHSTFIRFLQSLTVQSKSSVVVNGKGVEVDIGRG
VRQGDGLSPRLFVAVLDTVFRGLNWGKKGICINGEYLSHLLYADDCVLISHDPRQIQSMVRELERELLAVGLCLNGAKTV
ALSTIPNSRPVIVAGETVVVKDKVVYLGQEVTMDSNRFKGEIHRRVRSANWAFSKYSEFFRKRGCPMVLKKRLFDGVVLP
AFLYGAETWYLCKRDKQILSVAQRKLERKMLGITVLDHIRNEHLRSITKLKDVVREAEKRKWMWAERLSNFSHERWSLRI
LEWTPQGRRNRGRPLKRWRDDFVNAAGPQFLQLARDRTQWRTLMATQLRSHQ
>RTE-5_AMi_pol#LINE/RTE-BovB 454-3989 via tfasty with RTE-3_AMi_pol, 3 frameshifts and 3 stopcodons. (all before pos 700)[Crocodylidae]
MLRNSSSLKSKSHATHDPAQALWRRASDEAAGVDTLEAVAANLHTGGSGLWVTFYWTKQQxNSAAPxVTEQPYSGPHCSP
PRHEEGARKGAPNIVCFTSPWPAYHGWQGSHYSGRKGKKSIPLKLGAWNVRTLTDGNTNRPERRTALIGRELGRYNVQIT
ALSETHLPDEGQLTEGKAGYTFFWSGHGSEAKREAGVSFAIQNSLVKKLTYLPKGVNDRLMVLKLPLLGKKCATIISAYA
PTMTNSDEVKNQFYDDLHSMIAAVPKSDHLILLGDFNARIGSDCQAWDGVIGKHGIGSCNSNGLLLLRLCAEHELLVTNT
VFHLPNRKKTSWMHPRSKHWHLIDYVIVRRRDRRDVHVTKAMCGAECWTDHRLIISSLKIMIQTRWRPQGRSGPKRLNTA
GLINDSTRLSFANHLKDQLHTTPLHSGSIEANWKWLHEAIHSAALETLGPSIRRHQDWFDENDEEIQRLLEEKQRLHRAY
LYDKSASAQHAYSSIWKTIQRKLRGMQDTWLKNKADEIQHYADRNNAKKFFDALKAVYGPQVLGSSPLLSADGTTLLTDK
AQILQRWAEHFSAILNRTSSINMDAICKLPQIAVNTSLEAPPTIAEVQKAIQQMSSGKAPGANAIPAEVYKSGGHGLMEK
LTEIFCSMWAQEVVPQEFKDASIVHLYKRKGNRQLCDNHRGISLLSTAGKILARVLLNRLTDHLNDLLPESQCGFRKGRG
TTDMVFAAWQLQEKCQEQNVDLLLTFIDLTKAFDTVNREGLWEIMKKYGCPGKFINMVRQFHDGMMARVLANGECSDPFP
VTNGIKQGCVLAPTLFSMVFSAMLSDAFQDDDLGMGIRYHFDGDIFNLRRLRASSKVQTAMLRDFLFTDDCALCAGSQAD
MQRSMDLLSSACDNFGLTINTKKTEVMFQPAPGTTPQEPHVSVKGQQLSMVDKFAYLGSTLSRAVHIDDEVNARLAKASV
AFGRLRKSVWDRRGIRMSTKLKVYKAIILPTLLYACETWTIYQRHAKKLNHFHLCCLxKILKIKWQDKIPDTEVLRRSAL
PSIHTLLKLAQLRWAGHLSRMPDTRLPKKIFYGELSNGVRFHGAPKKRYKDTLKVSLKSFGIDPESWEQIAHDRPSWRSS
IQNGALAFEQQRTAEAMKKRVARKTKTSRIQSSSLSCPCCSRLFKAKIGLISHLRTHVT
>RTE-2_NV_pol#LINE/RTE-BovB 736-3397 via tfasty with RTE-1_DR_pol, 1 frameshift and 2 stopcodons. [Nematostella vectensis]
NNKKILKKTLKLTLASWNVRSLLDSSTSKSRRPERRTALVARELARYNVDIAALSETRFPDKGQLSEIGGGYTFFWSGRS
SEERRESGVGFAIKDHLIRKLDSIPEGINDRLMKFKLPLGRGRSATLISAYAPTMTNPEDAKEKFYEELDALISTIPQSE
KLLLLGDFNARVGQDHQAWEGVIGHHGVGKCNSNGLLLLRMCATHGLAITNTMFRLPTRKKTSWMHPRSKHWHLIDYVIV
RAKDIRDVCVTKAMCGADCWTDHRLIISKTNLHIQPKRRPQGQTVVKKLNVNKLKLPSIQEKLVESLENQLTEDIGNDWN
SLKTTIHSAALEVLGSVTRNHQDWFDENDAKITALLEEKRQPSELIKMIPTQSRRKTPTSANADRYNxNSVTFKTHGxVT
KLMKFKALQTDTTRNDSTIRSDVYLDHXXXXXXXXXXXXXXXXXLYTTFVDLTKAFDTVSREGLWKIMAKFGCPERFIKI
VRQFHDGMMARVLDNGNTSAPFQVSNGVKQGCVLAPTLFSLMFSAMLTDAFREIPLGIPIRYRCDGKLFNLRRLKAVTRV
KETVIRDLLFADDCALNAVNEHDMQQEMDAFSSACDNFGLTISIKKTEVMYQPAPGKPYQEPNITVKGQRLQDVENFTYL
GSTLSRNANIDAEINNRIAKASSAFGRLRKSVWERRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCL
RNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHVCRMSDSRIPKQLLYGELSRGSRKVGGQRKRYKDCIKSHL
KDFNIDVSTWETAASDRPIWRNLIHKGAIHSENKRSNAAKNKRQKRKARADQPTNMTPSYWCPTCGRGFLARIGLISHLR
IHPSAP
>RTE-2_BF_pol#LINE/RTE-BovB 1-3039  [Branchiostoma floridae]
MTVHKGKRRLPVRTRATSSVSENNQADDMNTTIAKKLQLRKMNLGIGTWNVRTLNAEGKLQQLEYELKNYTWDILGIAEA
RLTGSGEITTDEGHKVYYSGHESAHIHGTAIMVHKETKDAVIEHNPVSSRLMSLRLSAKPFNVTIVQAYAPTSDATDKDL
NDFYNGLTVLMQRIPKKDITVLLGDFNAKIGTDAYKDWSGTVGKHGFGNTNDNGLRLLEFARYHSLAIANTFPAHKPSRK
ATWHSPDGKTHNMIDYILIGKRHLSSLNLAKTRTFPGADVGSDHDMVLTTLSVRLKSLQKKKDGRIHYNVKKLKDPNTLA
AFQSEIEERLAPLLADNAEKDDLASEAESNLKAAAKAILGKERLTKHPWINEQVLQKCDERREKKKVRFKSRRENREYQT
VNREVKQAIKDAKEQWIQQECSKIEAGIRSNNTKQAFQTLKTLTHSSTNQITCIEDADGNLLTAKTDIVKRWEEYCRELY
NFQLTAEEGVLQDLKSRTCQFQEDDEPDILESEVTAAIKALKQGKSPGIDNVPAELLKAGGETVVKVYTRICNHVFKTGK
WPDSWTTSIVIPLPKKGNLKKCQNYRTISLISHPSKILLKVILNRLQPQAEQILAEEQAGFRKGRSCAEQIFNLRLICEK
YRELGKPVYHTFVDYKKCFDRVWQDGLWAVMRRFRISTRIVNSIEALYKASKSTVMTAGEFSECFPTSVGVRQGCLLSPT
LCNIFLENIMREALTPKESPVKLAGRIITHLQFADDVDLIDGSAADQQEQFSSLDSTSRRYGMEVSLDKTMCLVSGPPGF
RTQVTVRGTELEQVGEFTYLGSLQTEDGSSAREVKVRIAKSTLALSKLKHIWSSKNITMPTKIRLLRSLVLSIFLYGAET
WTLNADIKKRINALEMNCYRRLLGVHWTSHTSNKDIQERITTLAGPLPSFLSLVKRKKLQWFGHACRRKGSLTNTILQGK
VEGARPRGRPRRTWINDLKEWTGRTSAQLTRLADDRQSWKSLVNSITAPTAT
>RTE-3_AMi_pol#LINE/RTE-BovB 195-3853 via tfasty with RTE-1_Crp_pol, 2 frameshifts and 2 stopcodons. [Crocodylidae]
CHWIQTGLDERVRVTLCNFPSLKSNSRASHDIAISPHRRTQVLWRWASSKAAGVDTLGAVAADLHTGGSGHRVAFHWPKQ
QWNSAAPWVTEQPYLGSHCSPPxHEEGARKGALNIVCFTLPWSAYRGxWGSHYSGRKPHKKTKKTKVTPLTIGAWNVRTL
TDCTTADRPERRTALVGRELARFNIQIAALSETRLAEEGQLTEKGAGYTFFWSGRSKEERREAGVGFAIKTQLVSKLTNL
PKGVNDRLMLMRLPLSGQRCATIISAYAPTMTNPDVIKDKFYEDLESLIAEVPKADKLIILGDFNARVGADHQAWPGVIG
KNGLGKCNSNGLLLLRKCAEHDLLITNTVFRLPNRNKTSWMHPRSKHWHLIDYVIIRRRDRQDVRVTKAMRSAECWTDHR
LIVSKLNIRIHPSRRPQGKKAPKKLNVSKLKQENVKRAFVEELRSQLVTIDVNSNNIEENWASFRDSVYSAASNTLGPTT
RKHQDWFDENDTDIGRLLNEKHRLHKACLEDSTSTSKKAAFNNIKRIVQRKLREMQNSWLSNKADEIQSYADRNDMKNFY
DALRTIYGPRSSGTSPILSADGTTLLIDKGKILQRWAEHFNNILNQQSSISEEAIDRLPQVDINISLADPPTLTETVKAI
NLLSNGKAPGADAIPAEVYKAGGSHMALKLTELFQSMWTQGTIPQEYKDASIVHLYKRKGNRQSCDNHRGISLLSIAGKI
LARILLNRLVQHIEQGLLPESQCGFRKGRGTIDMVFAARQLQEKCQEQNSNLYMTFIDLTKAFDTVSREGLWKIMAKFGC
PEKFIAMVRQFHDGMLARVVDDGESSEPFPVTSGVKQGCVLAPTLFSMMFSAMLTDAFRDCDTGIDISYRTDGKLFNLRR
LQAKTKLQEVTVRDLLFADDCSLNAKSESDMQRSMDHFSSACDNFGLTINTKKTEVMHQPAPGKPYVEPTITVNGQTLQA
VDKFTYLGSTLSRAVHIDDETNARIAKASVAFGRLRANVWERRGISQQTKLKVYKAIVLPILMYACETWTVYRRHAMKLN
HFHMGCLRKLMRIRWQDKVPDTEVLTRAGIPSIHTLLMKSQMRWAGHVTRMSDERLPKKIFYGELKEGKRSQGGQKKRFK
DSLKSSLKRFNIDPKSWEDLAHDRSTWRSLIHTGATVYERRRTAEAEQKRKQRKSRNSSTSAVDQATQSGISCSVCHRQF
KAQIGLISHSRVHRNQTNQ
>RTE-3_NV_pol#LINE/RTE-BovB 839-3985 [Nematostella vectensis]
MDRGIIRPQRRTALVAKELARYNIDIAALSETRLADEGSLTEQTSGYTFFWKGKAAHEDRIHGVGLAIRTSLLKELPDLP
TGVNERLMKLRLPLCYKRYATIISAYAPTLTSPEETIEQFYDDLSSILSSVPAGDKIILLGDLNARVGRDYERWDGVLGR
HGVGKMNNNGLLLLSKCAEYDLVITNTVFRMADKFKTTWMHPRSKQWHLIDFVIVRQRDIQDVHVTRAMRGAECWTDHRL
VRCTLKLHIAPRHPKRPKLVRTPFNTARLQQPSYLQKFQNSLNEKLTANGPLSGDPKEKWNQFRDVVTETAKTALGPKTR
KHQDWFDENNEAIENLLARKNKAFMEWQNDPSSAAKKDRFKSLQYLAQQEIRTMRDQWWEKKAEEIQGFADSNNSKHFFS
SLKTVYGPSKSGSAPLLSADGATLIKDKTAINMRWREHFSQLLNRPSSVDQSALDQIPQQLLIEELSDPPSMEELTKAIK
QMSSGKAAGKDGIPAEVYKALSDEALHAFHSVLISIWDEEVMPADLRDASIVALYKNKGTRTVCENHRGISLLTIAGKIL
ARIMLNRLIPSVAEKNLPESQCGFRPGRCTVDMVFTVRQIQEKCLEQNMNLYAVFIDLTKAFDTVNREALWIILSKLGCP
AKFTTLIRLFHDDMTGEVLSDGEPSESFSISNGVKQGCVLAPVLFNLFFTQVLLHAVRDLDLGVYIRYRLDGSLFDLRRL
TAKTKTMERLILDALFADDCALMAHQENHLQTIVDKFSEASKLFGLKISLSKTEVLLQPAPDSIPQQPCITIDGTQLKNV
DSFVYLGSTISNDNTLDKEIAARIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYCRHIKKLER
FHTRSLRAIMRIRWQDRITNLEVLDRADTTSIEAKILQAQLRWSGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKD
NLKSNLKWTSLLPRQLEAAASNRTCWRALTSNAVQSFEGDRRSRLTAARHRRHRAASASVPTTGVPCPICNRICASDFGL
RSHMRVHK
>RTE-3_Crp_pol#LINE/RTE-BovB 658-3849[Crocodylidae]
LNFGTWNVRTLIDNPKSDRPERRTAIVARELARHNIDIAALSETRLAGEGQLREVSGGYTFFWKGKPDRDPRIHGVGFAI
RNKIADVLPELPSGVNERLMTLRLHLSQNQRATVISAYAPTLDSDEEVKERFYSDLDNALASIPRDDKVILLGDFNARVG
RDHEIWSGTIGKNGVGKANANGILLLTKCAQHGLIVTNAVFRQKDRLKTTWRHPRSEHWHLLDYIIVRGRDLRDVLVTRA
MKGSEDCWTDHRLVRSVMNIRLAPRHRKTQKAARRRLNVAALKDPGQREEFQAQLYSALEQVPTADDISIQAHWEQLKSA
VQDACAQTIGFASRRNQDWFDANDAQIRDLLERKRAAFIAWQSHPRTRRKTAVYHQLKAEVQRRIRDMKNNWWVEKARVI
QGYADQHDVRNFFQATKTTYGPRSIGQNPLRSQDGSRLLKDDDAIRLHWKEHFELLLNRESTVSEETLQAVPQRPVVDSL
GDPPTIGELKRAIQQMKTNKACGPDGIPAEVYHAGGFRLTSRLHQLILRLWDEEDIPGDLKNATIVTIYKKGDKSDCGNY
RGISLLSIAGKILARILLNRLRPVAEEILPETQCGFRPSRGTADMVFVARQIQEKCREQNQELFLAFIDLTKAFDSLNRE
ALWTILQRLGCPLKFVTMLRLLHDDMTATVLSGRSETDAFRIRTGVKQGCVIAPTLFTIYLTVIIHLIRDDLPSGVSIQY
RLDGKLFNLGRFRAKTKLTTKDIHDLQFADDCCVMAHSAQDVQATLDLFNASYKRLGLSLNVAKTKVLHQPSPGQLNIPR
AIYVDGEALEYVEHFPYLGSHLSQRATIDEEVQHRVNCASAAFFKLQRVFENRDLRKSTKVLVYKAVVLTTLLYCSETWT
VYRRHIKTLESFHQRCLRRILGIKWEDRRTSASVLHEAASTSIEALLLRNQLRWTGHCVRMSENRLPRQILFSQLSVGQR
SKGGQRKRYKDTLKVALKHGGIDTNGWEEQAADRSAWRHLVHQGARHFEAQRLDTEAERRRRRKEKETNPGLRIPLPRAT
TCPHCRRTCASRIGLLSHLRTHQA
>RTEX-3_VC_gag#LINE/RTE-X 25-1071  [Volvox carteri]
FTIVHAYHTTLATSQLSPSHWLCQRSRICRTAGISPQSPSKRVLRSGKEYPTPSAAALEEAAAGDSMTRSTQKEPSLDEI
YKLLQTHATQTKASFDSLHSKTDALAARVDSLEKNIPEIITKKVETEMKQFEVRAAQFIIETVQSQLAGAPTFATDRTGS
KQRRNLTGKSAYYDSGSLIAFGVPALATAKQAAEAITQVVSDASGGSLQASFLSVEVRTEKPRPNQAAPTYNITIGVTPR
VRGMLFRHSQALKAIGITFRDDLTPAGRQLKQARNAQFLRLRDEGRKPKWLGPYIEYQRTDGMYYMVSKYDVSDVPPPPP
QPPAGNGAAAGTSDGRVTTEGAGEGSAA
>I-4_AO_pol#LINE/Tad1 1392-5294  gi|83776064|dbj|BAE66183.1 [Aspergillus oryzae]
MTTNLRILQLNIMKSRPGMEALINDHQSQNLDMLLIQEPPMTAYRSHVNHSAWRLYRPTYTDESVRFRSLLYVNRRISTS
SHRQIHCNHPDVVAIKIWTPELQYLIFSVYIPPVALYEAPEVSSAQQILEEIQTSIRQHAEGNNRVTKLILAGDWNRHHP
AWSHRPVHHSFAEHAEELINFFQAHELQWCLAPGQPTFWSLKEPGKTSVLDLTLTNNTERLIKCQLYHHHYGSDHRGTYS
EWSLQPKQNVKLKLKRAYDRADWTKVGQDILNLIDPQPRILSSQDLDQVVENLVHTTTTVLDQHVPFLAPSPYSKRWFTP
DLKVQQTEVNQIRRRWQDGCAILGPSHPMTKTLFEEMRRKRRQWTRAIEKAKSGHWREFLDKAGEGHLWKAATYMRPRDA
DMSIPTLKVDTKEVTDNQEKAEVFLEAFFPKMADPGDEEVESPAEELRWEPITEIEIHRSIRAAKGTTAPGEDGIPTLVW
KQLWAYLKETITIIFTKSLDLGYYPNQWKRARIVVLRKPGKPDYSAPGAYRPISLLNTLGKLLEAVMARRLSYWAEKYGL
LPDTQFGGRPGRNTEQALLVLANAIDRAWVRSRVVTLVAFDLKGAFNGVNKTSLDTRLRAKGIPFKARQWICSFMENRQA
SVTFDDFETENLPLEHAGLAQGSPLSPILFCFYNSDLVDQPVDSNGGASAFIDDYFRWRTSPSAEENIKKIQEEDIPRID
EWARRTGASFAAEKTELIHLTRRKSEHCKGQILINGQVIKPADTAKLLGVIFDKEMRWKEHIQRAVRRATKVNIALGGLR
HLRPEQMRQLYQACVTPTIDYASTVWHNPLRDKTHLRLLRTVQRTALIRILSAFRTVSTEALEVESHILPTHLRLKQRAQ
ITAARLSTLPGNHPIHGVIVRAIARSSHIGSGQRFPLAETMRTMDLNRLQALETIDPTPLAPWRTQPFTEIEIEPDREKA
KANASARQAMTGATVFSDASGQQNQLGAAAVALDKNQQILGSRQISIGSMSYWSVYAAELMAIYYAIGLVFQLAQKNQTT
ATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAGELKARGIPLRLQWVPGHCGDPGNETADRLAKEAVGLEKK
HPFRHLLSREKGYIRDRISKEWEQEWRTSKKGGHLRKIDRTLPSSRTRRLYGSLPRNRAYLLTQLRTGHSWLATYGKQHR
FQEEEKCECGAVETVVHVLIDCPRLNRLRQELRRKIGRAFNNISDMLGGAEQGKEGRLQDAPQDSSVLGAVLDYAEASQR
FRSRAPRGRQNRTPGIGQHRP
>RTEX-10_BF_orf1#LINE/RTE-X 219-2987  [Branchiostoma floridae]
MATAASPTPSRIYELLQLPESTTFSDVHESYATYIQDYTREREATKKLKPAERKAYMYRKSGAELREVSAAFLSLFETHL
GTTSDCLRGPERYSVTHNISCITVNIPGESVSSWKSVCGAYYGVDGIDRGPNGVQYSTTFTDADTRIGTELGSLHITVYK
NKLLVQGTSYLLWFLSHYNILQGMVLSDMTEKSADVTPVCTTSELQPPIEETICAVCNKREVEGDEFVGCSTCSSWTHFD
CTGLDDATKSTLRNTDEKYYCINCHVPRVATCTIMLSDPPINTDSTTAGKTMTARKTNLDHSSNADVNTVRTKAVQSSTS
ETKEDQYSAALHEKIETLQRAVMELESSLASSKLQANVFETSVSGHLDVMRKEMESAKCTCSSKIDDTASRKLREENGKL
RSRVQHLEQEFSSLKTTSLTLKSELDDMKLSQSLLKVKVGNVKDLIKSSEHVSHPKPAPRKEAVISENNPEVPVLEYTLT
TSNRFDVLNQEESERTSESSVEEAVEVLAEVRSPKVHAATRTVNDETSSVSRQEGQGRKRVVLIGDSNAQKLKPNLLCPT
ADTSKPYWCPNLFSAPTVLEDISNEGITPQTVILHLGTNDVMAKTKDTVITEFEVTVSTAQSLFPQAEVVISAVPPRRNA
KYRPNVNEDISAINLHLQKMCDTNKQLVYVNHPQLWKGTDDYNAHMYEPDGYHLSGDGVRTMAYNLKKHASKALGLPPLR
NHGTSPRRQGHRNASNAYRGNNTPSSQSKGRKPQRNMFDEQGSRTTLAPDRPGLPQHQSSVGLAKPPAPPPRNSYYNQPR
APKGAPTSLPGQDRGPQWGNFSPGPASAPYNRQGNFAPPTLPDGPPAPAPPFFPNRPRQMPPAPWFQEWPSPAEAYGMPP
VGFGQHRWIGSPPFPYFHMDRGWYGHPPDPSFGLSDRPHGSR
>Tad1-1_GLuc_pol#LINE/Tad1 1647-5312 [Ganoderma lucidum]
MPERQPINAPADPRPTHSNLPHLRIFQQNVNKSLIAQLDLLHTVHPNEYDIIAIQEPYLDHLNLTRANPRWVVVYPEGHH
DVAHRTRAVLLVNSALSSNAWAPIKIPSPDIVAITITSRSQRRVHVFNLYVDGDHDRALRAASRATVKLAGQQRPREAVS
MHLPNPPDLSDHLIWLGDFNRHNPLWDEPRNHHLFTPANLDRSQRLLDVLATHGLEMVLPAGTPTLEASRTKNLTRPDNV
FCTADLAESLLSCQVRPELRPTRTDHYPIISVFDFPTDLSARKPRRDFRQVDWEAFEEVLKDALEEEPLPPGELRTVRDF
NTLLAGVTAAINRAIDKEVPFSHPTPFSKRWWSKDLAQMRKDKQRLAKVSRRHTGDPLHPSHKEFREHRNRYAERIKYAK
KDCWTAWLDSTDARSVWTAHRFTKKEASDGGSARIPPIRVAEANGVLTSNAEKSEEFFKTFFLPPGPAPPFTPESEYPPP
AFEFADITDLQVERAIASLRAFKAPGPDGVPNEVYKHCSRTLVPYLGRLYRATFNLHYYPEEWKISDTIVLRKPGKADYT
VAKSYRPIALLNCISKILSRCVADVLVYEAETKLLLANYQFGALLANYQFGGRAGRTTTDSIHLVTKTVKDAWRVGKVAS
VLFLDIKSAFPAATPAQLFHDMRMRGVPKRIVDWLEEKLRGRRTRLKFDDFISELIDILNGIDQGCPLSVILYSFYNSAL
IDSADPKNGETAVRSMDDVALITIGLTFGETHAKLNDFFTRPGGGNDWSRTHNSHYSLDKFGLLNMTRRTAASLGSSLRL
GDTTIDPSDHHRFLGLLVDYRLRFHQHVTLALGKGMAWVATIGRLARSQYGLTPELVRRLYLAVAVPSMLYAVDTFLTPI
HSEAGSKRARGFVGAICKLARVQRQALLLITGAMRTTATDLMTAHAELLPFHLLVDKLCQRVAVRLCTLPITHPLAPHVR
VAAKRYVKKHRSSVHELMRAYIPTDVLAAFEKVLPVRHHPAWEPRHWTHNPQSKERAEDDDEEWARKHGILVYSDGSERR
GKVGAAAVLLRRNRNRPKTLHYHLGPSTKYGIYEAEIVGSILGTELLRRERDAVQGPSVALDNKSAVQASEQLRPRPSHY
LTDYFHDRVNELFAKRKVATGSGFALRWVPGHLGIKGNELADAAAKKAAKGKTSPKNMLPHLLRRPLPVGVTKVKLTHLK
GPCRQSLGRSGGGPSGACASCP
>Tad1-2_BG_gag#LINE/Tad1 76-1770  [Blumeria graminis]
MPPGRRKIPTTLVSPARVVSRAVKRARPRPPLPTVQEEVILAAAAEKQQSPAEPIYMDSEDEFMDLGLETEFPSNSSSEN
LPLSPTPAPVSVTAALSHSQIKPLRRDSTQGLSSSIHASTEDNVATEKQPSSTLPRSSARTTARTIEHPSAAMTNNIAAS
LLAWQNAGAQHLRGLPPTIAADLKAIVTRSAARVIAGLPVFEQSQTAPNVKVGAQPAPQPEPPASSTYANAAKKNLSVPA
HLPKATPRVTSPKKKNRPDSRVMIRLAPDHPLRFQDSLLVRTKLRSFLEKPELIKDIRSVPSGLALVAPSSDQAPELMQA
ALALQPATGVVPIERQEKRENFLLSPVPKYGYNASGSPEALSDAEIREELAAAKIDTKSIFSISWTRNSLASPEWEGTLR
LVVAKPAADKLPSSVRLFARSAKIRPADNRPRLQVCQRCHGYHNINACTRRARCGLCASDSHKGPCTSPIKCLNCAGPHV
ASSTGCPARPFRANGVFVRPDKERMRVMRQEGHKSWLALNPPPPAPEPPAGSPSTQPSCTTIPAPILTIGSASRFAPLIS
LEESL
>Tad1-1_TMe_pol#LINE/Tad1 738-4193 [Tuber melanosporum]
MRDNRSTPPPFPVSTTPPQSTSSFSLVQHNCMGSWNVFLSLFNALVALPSPPVLVALQDPPFFRGKLPQFAGFKSFSPPT
ALGEKPRVAVFALRSFFDVVSLVPVFFDNPALMAVDVYTPSGLFDSSHERFRLVNLYSLWTTSSLYRSVSPEEAYPVLDF
PTLVVGDFNIHHPQWDPDRPLRKREIRTSTPYAELSQEXCFSLLNTPGVFTRFSLGQDHAPSVLDLAFANQHLAPFVETW
DASLQSTGSDHVPISITLTSPLLSPPQLTPHWKATDWTKVLEDLGSLTIPPPPPLPTQQALSTWLDINLGRIRLVLARHT
PMKKPSTRSKPWWSDTLSDLRKVHHSRAREARTSPSNDTRASARLAKNAYFKAIKKAKKEHWSRFLESATPQNVWTAKRF
AFGKPPERFPSLPQATSPMELNDALLSHFFPPRPPAFCPPILRAFKDAPPLLEEEIAAALSKSSSSSAPGPDLFPYSVWK
KVNISRPSLLVELLSPLVSFGFHPASLKMANGVVLDKPGKPSYDTPASFRIIVLLETVSKILERIIANRLSPLARSLGLL
HPHQCGSLPGLSTFDACATLAHEVQTLQRPQLVASTLFLDIKGGFDNVSPNDLFHMLRSKGIPPYLCSWVRSFLTGRQCR
LVFQGSPRVFKPVQVGTPQGSPISPLLFVIYVSSLHFPVPRGLILSYVDDFAVTVASNSYRRNVQRLQHLVKMLTQRGRR
LGVSFSVPKTELMHWRTPRQRDLASNLPIVIDGLLFRPSGVVRWLGHWFEPASCSLRWATNTHFSKRLALAQGAFSMLKR
LSGPGKGLAPFLCHRLASSLLAPILLFGADLFSPSATMTDRLAVFWRQVQRWVTNCFSETPTGILPCESALPPIQCLIEH
RQRLAALRMVCLPPERNPATARLHCSFPATSCYRSPEDHRALTVGLTPGYRPLNWKTPEPSPPVRRHLPLDAIAHRVGKL
VGHLSRVPPASPALLPEPLPPAAPGDPPFPALKRGCRQFLLNVWTKQYPPPPRYAYSPXLSPHPFMGLGKFIAGRIHQMR
SGKSYLAGHRSWRDPDAPDTCPYCEEEPESFHHAILDCPSHSRARDAHLPGVECLDEGEPIWTSPELLHGLSAYISATSV
GFPPDMPALRDPPSGARPVGSPTSSLGSSPSA
>RTEX-8_BF_pol#LINE/RTE-X 1-1818 fragment [Branchiostoma floridae]
LSQIVPIHKSGDPSLPDNYRGISIISCLCKLFSSILNNRLVSYAENNSLFKPHQAGFRKNFKTTDNLFVLSTLVSKYLSK
NSRLFACFVDFSKAFDSVWRNGLLYKLNKLGIQGNFLRTIQDMYSKTTNRVKYSQGLTEPFVTNCGVRQGCNLSPTLFNL
FLSDITSVFDNDICNPPTMYSKRVSCLLYADDLVLFSESKQGLQCSLNRLEEYCQTWHLNVNLRKTKIIVFTKGGRIPKD
VYFMYKNNPVEIVTNYNCYLGIVVNSAGTFKANNKHLYSKGLKALFGINQSLDKADAPLSVRNKLFDTCVKPIILYGSEI
WGSVKSPKSCPIETIHLKFCKQTLHVPRSTSGLAARAELGRFPIHLEASLNAIKHLIRLRQKVPADSFQSDALSCQIDLD
KAGAKCWASGVRQSLEECGYGYVWHCPLQHNTNSSQIINSINQRLKDIYFQTFLREIHNDNKGGSAKNKLRSYRLFKSTY
NVEQYLDIDNIRHRTAVTKLRVSCHKLHIETGRHNRTPLEQRICRYCNLDKLEDEHHFVVECSLYKKERAELYRLIESMF
PHFIQLSNIDKFIFLMNLDKPLLIKHICSYIFNITKKREEAECTQ
>RTEX-4_NV_pol#LINE/RTE-X 1688-5125 [Nematostella vectensis]
MVRETQIEMTESTNYLKFCSWNIEGLKGKLEDPEFLSITKRHDLISLVETWLPQNSDLSINGFSTYSVCRKKPENSRRNS
GGITILVKASIRKGVRFLEQHSCEDFIWYKLEKSYFNLSRDIYVCTVYFPPRNSPREQQLNVDHFEQLQNSMYKFSQKGE
IIVCGDFNARMGNLEDFTDLSDSACSYPFPTVRNSRDQNVNAYGKSLAEFSNSNNLIVLNGRTRGDHLGQYTCFTYNGAS
VVDYTLVSQTIYPQVHHFTVSTPSNFSNHCFLSFALKTQKIKDINNLMDLDQHPEVFKWEKESETLLRESIASENVSRDL
NEIFKSEEKINVDLAVDSFTNVIRQASKQVILVKKQKSSKRSSRQHQKWFNKDCNELRKELRSLGKLLSRYPDEPYIRHR
FFSTKKAYKQLTKKLKRRFHTDLLEKIKLAADSNPKEFWNLVKTIRSDCSARGLHSVSPDAWYNYFKELNTPQNCFSDDS
GIEAHIVKNYHVWARNRDEILDSPITLEEVQSTAKLLKNKKASAGDSLNNEIIKVSVESQGRYFVKLFNTVLTQGVFPKS
WSKGYIVPLHKSGDKCDPGNYRGIAISSCLGKFFTLIINGRLTKFLKKYKILNRYQIGFRKGFRTTDHLLVLKTLIDSYK
SSHKPLFTCFIDFKKAYDSVWREGLLYKLIKIGCSGRFITLLQSMYSDVRSSVKLDQGITPSFSSHVGVKQGCNLSPTLF
NIFINDIPEIFSSSCDPVKLDNTSKLNCLLYADDLVILSDSATGLENCLQKLKMYADKWKLTVNMKKSKVLVFGPQQYRR
QFTTGKWDYGGEPLECVDEYTYLGLKFHFSGNFKSALKSLYNKATRVYHCILNRLSNVENVSIQVLLKLFSSLVVPVLLY
GCEIWGTCLLGRASSYEIFETKFFKVSNDFEKLQLKFFKRILGVHSKTTNLTIYGELGKAPLIVQISSLVAKYWCRIKSR
IYENTLVGETAKISLSSTSNVPVRFINSLFAWCDLKTLQEIDIEGQQIHTLGKYIKKVLYKSYATFWKTQAQLNQNSGKL
RTYCKIKTNFKLEKYLSEANVRRRQSMTRLRVSAHKLAIETGRYKNLPYELRICEKCEKNKVGDEYHTLMECDYVNDIRR
VFFNDLFAINNSFKLLRPKDLFCIL
>RTEX-4_ACar_pol#LINE/RTE-X 1596-4984 via tfasty with RTEX-1_ACar_pol, 1 frameshift. [Anolis carolinensis]
LSILSWNVAGWKSSIKDPSFLDYLAQHHIILMQETWAVDDISSNGFQSYSIKAEPPNRYGRAKGGLTILISNKLRVKVTS
LPPLMPNAMAILIQLINHKVLIINAYIPPMTKKAQIKAAWMELESYVEDLILQNPDASIVLGGDLNARMGPDDPSLYKQQ
NCPPPASEEESPLPLRRSKDQKSNFAGLCLAKITYRLNLYILNGALKGDHPGEFTFFSGGKTSTIDYIAISRDLIPFAKA
LKIMPKPESDHFPVLLHLHGFSREIHLTESYRLPLQLTEGFYKRVKWTLQVNQRITDLLKTERLTSLRTSLISAENANAL
METYGNIVQELQSQLSQGNNTERTQLQRQPHQQSQTWFDKECLSAKKALSTVYQSFKFNPTSTTAQDLLLQKRQYKQLLT
RKKREAIKNNWERLIEAVKAKDATTFWRITSNIRSRDQTAVDSQISPASWEVYFQELYRDTYSENAGRYVCPNISMESLP
SWPPVTTAEIERLVAQLKPGKAPGEDAIPPEVIKNNLDFWSPILASLFTCIDKYGQIPKDWGMAVIVPIYKRKGRQDDPX
NYRPISLLNTISKIYTRHLYWKLLDWMEQENILAEEQAGFREGRSTIDQCIVLQHLIEKYTSQRTSSLYAAFIDFRAAFD
SISRIKLWEKLGSTSIDKRLLQLIRSLHEGTTLKIRCSSQGHLTRAVETEKGVKQGCTLAPLLFNFYINSMVEHLYNLDY
HPPKLAERHLSILLYADDAVLLSRTQVGLKRALRALAKYCSAEQLHLNFQKTKIMEFAKRPKNHTWRLDGHNIEQVSRFK
YLGVFFHCTGNRKVHADYVAETAQKSSHAILKFLKTGGGHYIPAALKLFEAKPIAQMMYGAQLGPYPNFAPLEQVQSKFL
RSTMQVPRCVSNAILRLETGLVRVEARAWIATLNYWLHLSHSPCGLAPLTLRDEFQSTWNKVVATKIATLGFSQKHLLSM
GWDQAKVHIRQRILDTERQSDLACSPVFNISADNRYTITPMAYLTNLEVPNHRKAFTLARCHALPSAVLEGRYRKTPAPE
RLCPCESGHIETIEHVLLQCMFYRDIRINFITPWLLKHPGRTERYYTSLLLSDSCSAITYSVARFCAAAISIRRTMTDPT
GPVARAICYN
>RTEX-4_VC_gag#LINE/RTE-X 98-1546  [Volvox carteri]
MDYIQRARNNPEELANNGLMVQLIDQIAGLAGGLAATNQEIRTIKHEQAELKTQVKSLMKSGRGVYYDAFGLVHQNGLFY
LDSMRIFTTGNVDESRIKNVLREADVNIKRIRLLGNDPNKDRKTWCAYFDITERPSFFRAAEVLRHQKVGIDDNLTQAGR
IERKRMAPLRQDIMRQGAIPVWRNGAELYIKERPGGKAQPYGTRNDTDSDLGSAEYGADGGDSDGEGTAAAEQGADGSEY
VGGNAGGGEGGASGSRGPGGGTSGVAAAATTAAAGKGCVRGPKMAAAGSAAPAVAGAANPTAAIAPATTSWARGVRAPLS
PSVACRAGPAAIAPSVGANPTARAPPPPPPPEPIPPGHELALIANNKSKIPPEASLSAVKAKPPKQLRTEGTIGLMYTAS
PGTLERASYRPPAGRDPRVPGPDSRGVDAEGFRLVAGSTRNGQVGQGGSGSGGRDDRARDQLAVNRTNRFANLPNADEMD
DT
>RTEX-5_VC_gag#LINE/RTE-X 14-1312  [Volvox carteri]
MDNSYTEYLARARGNPDGPITAGMLLALYGDFRKLGDQVLDLKNEQQLSRVEIIDLQGRVSKLETDPSGITMDARGLISS
NKFFYWDSVVITTDKNKDEGSVRACLAELGLHALDIGLLTRTERPDRSTKSWLIDIRWKDRVKFFKAAPDLKRLGLRVDD
SLTKEGRAERSRLRPMWQVIKAKQWIPMWRNGAELFYKKSPNGSAPVPYPSQYGDDDSDSGEGGEMDAENDDDVNMPFRG
CAGGVGATGSGSAAAGGSMPPPPPPPPPPPPPKPMAPSPAAPPPAPPSYRKQLGVKNREAPVASLSAIKAKGGKHPRTEP
VYGLTYSASPSRLDRSHNQAPAPRDPRPSSAAGRTMDIDGFITTSGRRSSKDQDRDGHGETGQQGLGVDEGTTRSREGRA
GPSSRADHRPYDQAGKQTSANRFAGLPAEVDD
>RTEX-5_BF_orf1#LINE/RTE-X 150-2387  [Branchiostoma floridae]
MAGIRSTRASTRAKSSTKWWNVSASKIPADETIHTDYNDEAKTSPCNTKFVTTTDRVPVWVKVCKLRYNEEYGKQSGQKV
EWRDGDQADVLIVTETEQKDGKVQESCVLSIHFWRNGTICIQGSAFLEWTDKIFPSLKKKVEETSNGNCQNGGPSQSDAD
GNKDHDTGSNTFTTPKGKTFLSSETVDTSSETIDHSDETPVKVPVGTPRKTNRFRKAVENFISPFRTPTSTESPLNSSKN
VLDFENTPTPSDTVEKSTSHDHITRDIQKHYTDLVDLVNTLQVEVKALKDEQGTQKNEFEKKLKAVSGELKKQLEDEQKR
HANERKSVNSRHNEEMATLTAKCESLQSLVEKQQQQIAKLQEVTDSIQLSQSISKMRTYAQTVALNPGAHQVSAKNCISK
DNGTNNATDDKTMDPDTAHANHTTTQPSTEEADSDVELTQQVSSQEGTQVPTEESKQVRVYTDSIWKAVNVSRMFPNLST
HKDKTSTISDATKKLETIHDPGTSYAILHIGSNDLDNSKHDDSSVQGCLQKTEELISIAKASFPNATIVLSQVLPRGNDL
QSDLNKNIKDYNQSVLQRYKDEEKLLYVRHKKLSTSRHLYRRDGIHLDEVTGTSLLVADVKRTIRSVENEYNPGYSRENW
RQPPHSGQDRPQQNRGQDRTHRNRGQDRAQENRGQDRSQQNRGQDRPQQNRGQDRPQQNRSRDGSWRADTPGERSRPNWY
RSQVNTPHEDIINLAYKLKELLNNF
>R1C_NGi_pol#LINE/R1 2364-5567 R1C_NLo_pol and R1C_NVi_pol over 90% identical [Nasonia giraulti]
MAESQTNGTNVCVDVRILQVNCQKSYAAMCDIANYALEDGIEICLFQEPYVYKDRVCGLPAGSRMYLSKSGEAAVVVFGK
RYECMLLNEGAHEDAVCVWVKGPVGEILAVSLYCRPNGSMQGCVDYLDRVVSTRNGRRLLVGMDANAASDLWHSKSMVRA
WQAVRRGAVLRDWVVHAEMDVLNVPTLAYTFSGARGESDIDVTLYKGSECQFEWMLKDDWGISDHNPIVITMSTGENVDV
NGERMQKWNARKCNWLLYRGLIETFASDYGYDEYSVLGAEEKLTLLYKWMTEANEVCLEKVVTRPAPKRKSVVWWNESLS
EKKRMVRERRRAYQRERARTGDPDRMKWREWKECEREYRRMMKDAKESDWHGTVERKGETDPWGVISAFCMGKLNPVSLA
GLRTANGCTKTWMESARVLLDEFFPADDGIPAEEVYGVQMDMNEFCMGELDEAVLGMKMRKAPGLDGLTNEMLRQVWKAA
PLFLKGLFDTCLSEGLFPHKWKEARVVVLLKGADKDVAESRSYRPISLLGSPGKVMERMLVARLMRHMEGKWNECQYGFM
KGKCTEDAWARAKENVRAAESEYVLGIFVDFKGAFDNLLWRVALQKLREAGCTYEELRVWHSYFSDRSVCMYNGMDVVEK
CARRGCPQGSISGPPVWNLGMNDLLNELSGLGVEVVAYADDLLLLVQGNRRNELEQSASEALSVVYRYGMNIGVEVSDSK
TVCMMLKGSLNMLNRVVHVSTNETDDKKIRCVDRVKYLGVNVGVGMDFSVHIGGMRKRVTTVIMRLRRVLRKSWGLKRGV
VSMMVNGLILPAVMYGASVWYEQLHKRKLRGSRRLSEELVSCQRVVLYACTRVCRTVSTEAMQILFGSLPWDIECIRQAD
LHKVRKGLPMNENDLVADEDLNELSLHECRELVDQRALAAWQDRWEATSNGRVTYEWIRDVGFSGRSMKYFEPSLRVCYI
LTGHGSLNSFLFSRNLSNSPACACGAEREEWIHVLCECDMYAAFRDLDSIGVRRTEEGWDVSGVLCDRAKYECLCAFVER
AFSMRESIVQRMREREEENGENEELRLG
>R1B_SS_pol#LINE/R1 1-1481 Fragment, via tfasty with TRAS3_BM_pol, 2 frameshifts. [Scolopendra]
AFADDTAIIIEETSIKKIEDSWQEAERRVQRWATRNKIVFNENKTEAIFFPAKHAKKVPIIRFGLNLVGIKESLRYLGVY
LDKSLLWRVHLQVVQGKVGRIALKMRQVVGTHWGIDQMTMRVLYKRALLPLVIYGCEIWGECARKKWGVKRLEQIQRPLL
LGVVKACRTTSTHALQVLAGLPPLSVEIIARRQHYARLGADDYESHIPVCDWVHPAHIEEEAVGTYPLEIEARTALFTDG
SKTEDGVGYAVVVMEGGEEVRTHTGCLPSYCSIAQAEMRAIYWGSSVLEDCGNGPACLCSDSRSSLQHIANGRQGDATVM
AADALQRCREQQRAVSLSWIKAHSGQAGNERADELARQAAKNDLSTGEEHVLRPKAYSRDILRNEVRALWQQQWAISIKG
RWTFEVLPQVSQSPPVLTSKMVQLLTNHGNFAQYRSRFRLTEEDGVCICKQGQETAHDVLVECGLPHRARARSRIEQMAV
VQGVQTWQPECME
>R1E_NGi_gag#LINE/R1 2500-3930 [Nasonia giraulti]
MASNKKHTPAILVESENAPEHTLNPPTSTDAAANLGFASNTGLQRDRHRSISSVSSIASDENSSAKTIGDTFAKRAKRKR
EEKVPDEVDSGNPLERRNHEIKEVRKTFEQATLELRSICSIEKDKNRCKLNKGDLNKFTSVLSAALQLVEDAITDKYDYG
ILLQQKNEQLKQLREVLSARPRSYADAAGADRRMKQTLAPKRPPISSGANKPRPKNAGRPSATVVVTCGRENGESPKADD
IKEKLMSAVNPAAEGIRIKSVRVAKTGKVYVETNSSEDGKKLSELPQLRDAGLIAEVPKGRKPRLILYDVPRTMEPSEVG
AALLQMNADVFEGIERSAFEKDCNFLFKTGKRDADVVHWVLETSSELRDRLREKERLYLGWRRCRIQDYISLTRCYKCQG
LGHIGKYCKAKEETCGHCGGQGHKKESCPKKDQPAKCALCLRRDKPSDHSVMDPKCPSFKSAYDVYTQSIDYGGPVR
>LIN1_SM_gag#LINE/R2 13-2356 via tfasty with LIN3_SM_gag, 1 frameshifts. [Schmidtea mediterranea]
MTQSLPIVQDQFASNQLNNSSSELVIFKTILQNQIIFSQQLLDFISQRSNGQNQLPLSAKPIHPDLSLDLVSKKSTRDNQ
LPPSTNAMDPEKSFDECDKEALSNKILPLSAKLMELEEHILRMNSKFDIVLNKLSNSDFNDNNCNLNILNKINVDNNDDL
NISSNYNLVSENAENSPLNPINTQLKNFKVTKTKDALNMKRFNCNYLSRILNKNERRNIINNYPCFISLLKKKNSKTKFD
LINYELSLINKSKLNFKIKDCDSLFYRNGNLCISIKLSEIKKTDATKKIITKSTNFQNKNKTIISNLINTDNYCSKLIKA
PLAIKKFLFVFSHKLAETVSIKNELHKRAVINKTLDNLKFQKQLPYFLVKSDLKYADGDFIMKDLLTSEDTDNESFNIGS
SNLTRSQLDKLYFDFPEIKEMFFTEGMHKDSDKISSLINHLKVNKEFPKDISFSGGKFITNQKSNKIEPDLSNASDVMFN
FGLFDLFKISKDDIELERLISLPASSNKIVEIIFHLNYLNLKGNIKYFSNITYGTYVLNYFRNVLLLHSIIDSEKCNSLI
IDTLEIWGSELTDQIPSTSYFKFSCQEKLIKYKKWLLNGEIDKLKNIISPLTIKRINNLFNLFNKTISEKTNRLSMIDSL
LTYINDFRPERDDNVTVTAKRLLYFVIRDKKKFLLKNRDDFQISMKCRKNCTKEMSLIIFDLIESLENLITYEEHVNSVE
LTDKIDNFNKGIVLTLTNIEKKVVLPVDIDEEAVSSLELKITENKKMMTRQNLKVSKAMSK
>R6Ag2_pol#LINE/R1 gi|28569873|dbj|BAC57912.1| reverse transcriptase [Anopheles gambiae]
MIRVFQQNLNHDQTAQDLLLQSARAEGCDILIISDPYWVPNNNSNWVTDTTGRVAVVSVGDYPFQRIIDNQREDFVVVEM
RGIVFCSVYLPPVGSDLTVEEYKRKWTEIVSMLPRNRDTVIGGYVNVWSGAWGMERRPNDGERVSRGGVVMDAAAALGLV
LLNQGNQSTWIGANGRNSIVDVSFCSPSLVGDNNWRVCDETPSDHNTIKFVVGRVPRQRANYVGHSPVNGGRWSTRFFEK
DLFVEILRDQDIFGHVATPEELTQAITVACDGTMPRQPPRRQGRRPVYWWTSEIDRLRSHFYGMQRRFNRARTEEQREER
RQIKSDARAALQQAIKLSKDQHKQDLPEQLEPHGFGPAYQIRKQQWEGARVPMERDANKLQFIVNELFLERPPMEWPETE
VGGDPQDPVSEEELAEELKEIARSLNPKKAPGDDNIPNMAAAAAILAFPEVFAKSYKQLLEAGTFPDAWKRQQLVLLTKS
GKPPGEPSSYRPICLLSVLGKILERLIQRRLTTHLESTGGLSDPQYGFRKGRSTVDAITRVMNNGKVALDKKRKGDRLCA
VVTVDVRNALNSANWTAIGQALQRENTPPYFQALLRNYFVGRTLHYDTDEKVVSRTVSAGVPQGSVLGPTLWNVMYDDLL
RLPLEGLRADIIGFADDVAFTFLGRTTEQVSALATANLERIERWLRGVGLELAHQKTGFMIFCTHHVPQLAELQAGGHSI
QSTETLKYLGVDLCRKQHHSRHLERVANKASRITNALTCLMPNKRGPKSRSRRQLINVGNSIIRYGVATWGRWVLDKETH
RKSVQRAHRPGALRVASAFQTVSYDAACVVANTTPLVLLMQEDIRCQDEKVASGGVQSDIRKRQREETMRRWQDQWTTGA
GQPGAPGLKTRRLIPDINLWVSRKHGEVDFFLTQLLTGHGFLRSYFVEKGILEGSPNCPECGDAVEDVEHVLFHCPRSDR
IRNEMQQRCHSRVTMDNIVSEMCARSDT
>R1B_DS_pol#LINE/R1 1-1467 Fragment [Dugesiella]
AYADDLLVLIGGNNRDRLKEDVSSIFTDINDWALANKLSINKEKTRAIWLPGRDQGLLLRNVKLPEVKLEQHVKYLGITY
SSDGTFKEHQRRIDSKIRKLNNKIRSIRIGNRGLPGEKMRRIYKTVIEKIISYGANTWTKALGSVEKKKLNSLQRTMLLS
VTEAYRTTSTEAMQVIANITPLDLILRAESKRADILECGGSATVSGRPIGASGIEMRPHKFATHPKNWTRVGWAEWHDRD
DYILQIYTDGSKTSDGTGAAFVVLDRGRQIFSAGFSLSKHHTHYQAEAVAILKATMWFAEECQGNKVAIISDSQSALKAL
YRTQEVSPTIRDIKRTITTIKRQGRQIDLYWTKGHAGQAGNEMADRAAKEAVISGQRYVMPRPVSWVKALIKKETLREWA
TRWAGSDKGRHTHNIISAPGFKEWIFSKEITQILTNHGRTPSYMHRFGLTSSPLCSCGGVGDWEHYFFFCRSTEAVAGVS
ADYRTYNN
>R1-9_DWi_gag#LINE/R1 554-1975  [Drosophila willistoni]
MDKFVASLDHHSQPESDPLGNMSEEAVFGRRPLIGISPPPVHGNAAKTPLACAQAVLNSPDVTSLAPSPPVISRIAELDE
LGVLVWQLDHLFNKRDDNKKPVRHINMSTKQAIVRLKELQELLCQKALAGMFQKPRDVQERNTQTSPAAILLGKQTAEPE
RRDTPKRPREDAATQRKTPPKKKRGAPQFHEERVASSQHADSNKPEDNSADWQQVTVRRAKRTPAPRQKLPRHRSDAILI
ANKGSLTYSEMLKIVTRSEDENLKAIGANVKKVRRTAKGDLLLEIEKPMGNNLQQMSVDIGAALGSQFEAKPLTEEIRLD
IKDLDEEVTRDDIISAFWAERQIQIQPQSIKSLRPMYSGYQRATVSVPALTAKEMLKVSKIKVRWNVCPISINNAPKRCL
RCLEYGHIASKCSSKIDRTGLCLKCGKSGHKISECVNSPSCCLCIASGEQNIGHIAGSQKCVHGPRGGISSRHD
>R1-7_DWi_gag#LINE/R1 838-1539  [Drosophila willistoni]
MXYSDMLKLVTRSQDTKLQAVGESVRSVRRTAKGDLLLELNAAGAENVTQLKEDIGSALEGQVEARALSNLTRLEILDMD
GGTTKEEIVQAVSDQLSLKIVPADVKSLRPAHGGNQRATICVPGAVAEAILKAAHLKIGYSVCRVRVSTSASRCYRCLEF
GHMAAACNSPVDRTNWCIRCGGKDHKAKECRNGFNCCICESRGITERKHVAGSQRCPSITQAGPMKSSRPRRNV
>R1-9_DWi_pol#LINE/R1 1971-4943  [Drosophila willistoni]
MIRLIQINLNHCEAAQDLLVQTVRDLRTDIAIISEPYRNLSSSQWVQNNSGKSAIWSCGPTPAQVQSPESFNGFVIAKVS
NYWIFSCYLPPSYSLGEFSAVIDELADQIRSHRPAIVAGDFNAWASEWGSASTNARGQTLLEAFATLDLALLNTGEEYTF
QRGNIGSTIDLTFVSNALCPYARWEVSDAYMASDHKAILCTIEGRRRYDRPTARPQRYNTKRMDMQNFTSTLAQNVNTAT
SARGLFEWLRNACESSMPRKNTCPREHIPTYWWNDEIANLRKECHIARRRHQRNRVSDDCETLRIEFEQKRRDLKLAIRR
SKRRCFNDLLVEAENDVWGRPYKIVMKRLKTNQRTEPHSVDDMDRIVGELFPPQPPTNSPAAPMDVETIPPISVRELLAA
VARTRVRSSPGLDCIPNEALKIAAYQHPDIFASVFNKCINDGVFPDLYKRQKLVLLPKPRKQAGEATAYRPICLLDTTGK
VLERILADRLDEALHSANALSDNQFGFRKGRSTIDAIQKVVSIARNAIAGDRWKGGAKKYCIIATLDVKNAFNSARWPCI
LDALRNFGIPHYLWKVISSYFSNRSLHADTLEGEKIYNITGGVPQGSVLGPLLWNAMYNGVLNLELPAGVEIVGFADDVA
VVSVAKNLSEVETMCSNGIARVQQWLATTGLLLAENKTEAVLVSSRKKVETASIQVGGTQIKTKKAIKYLGVLIDSRLNF
KDHLSATAKKARITCSALSRLMPNTRGPSQSRKTLWHGVIKATMLYGAPVWAEAMSTKSYARELDSIFRISALRVCCGFR
TISGIAAMVLASAIPVGILADESKRLFWALKEPNLVPTEKELLRVQAREISIARWQSLWDMSQKGRWTHRLIPSLKDWLA
RAHGEVNFFSTQLLSGHGCFRGYLHRFRHASSPECAWCANGEDETAEHVLFKCGRFETEREHLEAELGEQITVSNLVPMM
IRRRENWEAFNEFAAIAMTELRRVEQLSRVE
>R1-14_DWi_pol#LINE/R1 1340-4324  [Drosophila willistoni]
MFNFIQLNLNHCEAAHELLKQRVRETRSDVAIISELFRRMSAENWICSNSGKAVLWACGSPNVQLRSRLAGGHFVRALIN
GKWIYSCYFPPSLDYLDFCESLDELAADARAHSPFVIAGDFNAWAQEWGSSITNARGRAVLESLASLDVALLNCGSRNTF
NSAGRGSIIDLTFVSNSLARFAAWRLDDNYTASDHEAIIFSLGQAARPQQTRTQAVELPYKADTLNTQAFTAAIYDATLA
AGSAQGMADQLCGMLASACDASMARSRPFNKHHQPVFWWNDEIGDLRRACLTARRRYQRARKRLDVNWPQMHSTFSQARK
SLKKAILAAKKEVFLNLCDSAEHDPWGKAYKLVVKRIHANRQSAPTGAADLKKIVDALFPSRSNLFSASPIAPARLSTID
AVSTEEILVAAKSLKPGKAPGPDLFPNRAVKLAMTLRPEAFVETFXKCLLEGVFPSQWKVQKLVLLPKPGQPPDVASSYR
PICLIDTVGKVLEGLINTRLNDLISRSNGLSENQFGFRKARSTIDAISKVVNIAANAIEGSRWKGGSKKYCLVVTIDVKN
AFNTADWGCILGSVCRLEAPVYLQAIIRSYFDGRVLRFNTDEGCDSRHISAGVPQGSVLGPLLWNIMYDGILRIPLPQGC
ETIGYADDVALVIVAKDLATTEAFASCAIEKITNWLHSVGLSLAVLKTEAVLISSRKTVEVARILXERSAIASKRAIRYL
GVWIDTRLCFREHLNHVHTKAASTGQALPRIMLNTRGPKQERRLLLASVLKSVILYSAQVWSQAIHVPSYSKGIKATYRL
CALRVCSAFRTVSEDAALVIAGMIPIDLLADEAKAIAVAVSRGTPKKEASSEAXXRSLVTWQRRWDASSKGRWTHLLIPN
VTEWTERKHGQVSFQLTQLLSGHGCCRSYLHRFGHEHVPFCLVCGSSTVEDARHILFECVRFNNERQRVADLINTALTPD
NLVTAMLAKSAIWDAVCGFAGVVCQVLRQEERARNG
>R1-14_DWi_gag#LINE/R1 88-1341  [Drosophila willistoni]
MLRSPPPQSRAAVAPKSNSPMVRPVTAEADVANSSARANGSIVALQSGLVAASPAATTTLSAGAHTSILHAPAKRVRKEA
GSPGGNFPKRAKSRQQRGATIDDEIEEMGSLLQHIIEATSPXSEAKKXSDEEKZVXDASKGEVKRQRHINDKLRRQFLRL
KVLHDRVALPKKRPAAILVQSKGGMSYSDMLKLVTXSQDAKLQAVGXSVQKVRRTAKGDLLLELNQVGAENVSKIQQDID
TALEGQVEAKSLANLVRLDVLEMDEEATKAEICHAVLMQLSLKVTEDDIKSLRPSYGGSQKAILCLPANVAEPILKAGQL
KIGYSVCRVRLNQDATRCYRCLAFGHVAARCQDPIDRTNWCLKCGSKDHKIRDCANNANCCLCAARGVTERAHIAGSLRC
PSANASGQEKPAPRKRYV
>R2C_NGi_pol#LINE/R2 373-3534  [Nasonia giraulti]
MTRSGRGLHHKKGHPDWNDQRNLAGKQHRKEIWSEEERLLLAKKEAELAISGARFINVELRDFTARSLDAIKGQRKRPDY
KILVEKFVRELRVRGIRQGVASRSQQARAMAVAGAPAATSSGAPPVATQPPPSGRVLRSQVVEAPAMEIPVAESEGDSSG
DELFEDVEPVRLSDLPPDRFTIYFAGLEIPGTEDIYAHRLHTICLMTTWRTKEEVRLELGLFLKDLFPSKGSQERPERTN
LPDPRNRIERRRGEYKKCQDLWRRNKSTCVQRILKEDLSQGECLPRELMEPFWNATFTQNPGTAPVLPPPTEVYSSVWEP
IRPENIKGNYPPQNTAAGIDGLTVGDLKGVSREMLARIFNLFMWCGKLPEHLCASRTILLPKKPGAKVPGEFRPITVTSV
LIRTFHKVLAERLKVVPLDPRQRGFRESDGCAENVMLLDMTIRYHHERRRKMFLALLDMAKAFDSVSFESMREVLTTKGI
PTPFIEYFMTHLEDSFTVLQHGNWQSGKIHPTCGVKQGDPLSPPIFNFIMDEMLKRLPKEIGVNLDGLFVNAMAFADDLS
LVANTEQGLQILIDEATSFLGLCGLRANPNKCVTLAIKTIPKEKKTAIDPSSHFRIGNAVIPSLKRTDEWVYLGIKFNSN
GRLISDAKPKLIKDLELLTKAPLKPQQRLWALKVIVIPGILYRGTLGSSTAGYLRSLDCVIRAYVRRWLRLPGDCPNGYF
HAAVADGGLGVHPIRYKAMVDRLARLRKLEKSAYITGPEAARYLQRQVSIAENRLRDGANRIMSDASMLREFLRELLYKS
FDGRPLENSSKVPGQHRWVEEPTRFLSGADYMNCIRARIAALPTAARCARGRLKDKHCRAGCGNVETLNHVLQFCHRTHG
TRIGRHDAVVKYVVGGLKKRGYAVKEEPKIVLQDVVYKPDMVATKEGKTLILDAQVLGDQRDMRLAHEDKLRKYGAPEFK
RKIRSETGSATIKSLSVTLSWRGLWGPDSVKGLLEEGVILKKDLKILSTRVLIGALAGWRRFNERTSMATSGRREEVTTR
MVRRWKRRERVGVG
>Expander2_pol#LINE/RTE-BovB  162-3338 [Takifugu]
MEHXKGKPRTRPGGLPGPHPGARPGAGARWRAPGGRAYVHGARPGPARTSYVDTPVSSGPTTRRRSMKGPVQCGLGGGPR
RGPWRSDPRLWKLAFGTWNVTSLAGKELELVGEVERYRLDMVGLTSTHSVGSGTQVLEGGWTLFYAGVAQGERRRAGVGF
LLAPRLSSSTLGFSRSSERVASLRLRVGERVLTVVCAYAPNNSSEYPPFLEDLGRTLDSVPTGDSIVLLGDFNAHVGNDS
VTWKGVIGRNGLPDQNQSGVQLLDFCASRSLAITNTMFEHKVVHRCSWHHDGLGRRSMIDFIVVSADLRPYVLDTRVKRG
AELSTDHYLVVSWIRWGGKPPRGPGRPKRLVRVCWERLVEEPVRLVFNSHLRQSFDRVPGAVGDIESEWAMFRSAIVEAA
VASCGCKAAGAGRGGNPRTRWWTPEVRGAVRLKKEAYRSWLVCGSPEAADRYRLAKRAAAETVAEAKTRAWEEFGEAMEE
DFRSAPRRFWQTVRRLRGGRRQLAHTVLGVRGELLTSPGAIIRRWKEYFRELLNPTNTYPQGGTESGDQEVDHPISGAEV
AEVVKQLPGGGAPGADEIRPGYLKALDVVGLSWLTRLCNIAWTSGAVPLDWQTGVVVPIFKSGDQRVCSNYRGITLLSLP
GKVYARVLEKRIRSIVEPLIEEEQCGFRPGRGTTDQLFTLAGVLEGSWEFAQPVHMCFVDLEKAYDRVPRSILWGVLREY
GVDGPLIRAVQSLYRRSRSLVRIAGCKSDSFPVRVGLRQGCPLSPVLFITFMDRISRRSRGVEGVEFGGRKISSLLFADD
VVLLAPSSKGLQHMLGRFATECEAAGMRISTSKSEAMVLARKKVECLLRVGEEVLPQVEEFKYLGILFTSEGRMEREIDR
RIGAASAVMRALNRSVVVKKELSQKAKLSIYRSIYVPVLTYGHQRWVMTERTRSRIQAAEMSFLRRVAGLSLRDRVRSSD
IREGLGVEPLLLHIERSQLGWLGHLARMPSGRLPLEVFRTCPTGRRPRGRPRTRWRDYISRLAWERLGVPPEELMEVAGE
RAVWASLLKLLPPRPGSG
>Rex1-24_NV_pol#LINE/Rex-Babar 3-1892 (fragment) [Nematostella vectensis]
EVVHVGLDTIMPAKPVRSCSTDVPWMTDKLKTLIMKRQNAFNIYGADSVQFKYFRNIVNRERKGCRVKYYESRMQHLKGE
KPQTWWSEVKRLCGLKTTNSDLASQINIEGISNMPPSEQANVINSTLLEPLEEYKLPIPLERVSLEFDSPLFLTVSEQRV
QKALERLNPRKACGPDRIPNWLLKEYSDLVSYPITDILNTSYAEQRLPSIWKMADVTPLPKKKPVVDLQKDLRPISLTPV
VSKVAEGFVVDDFVKPAVMKILDDSQYGAIPQSSTTMALVNMLHHWSTSTDGNGAAVRTLLLDYRKAFDLIDHSILVRKL
RSQCNLPASIVNWIIDFLSNRSQRTKFASDCYSEWGPVPAGVPQGTKLGPWLFVLMINDLDISALQWKYVDDTTVSEVIA
KGSDSHVQELVDKVVEWSCDNRVQLNADKCKELRISFARQERDFTPISIEGKEIEVVTSVKLLGLTLTNNLTWNDHVTEV
TKKASKRLYFLTQLKRAGVPQHELVLFYTSCVRSLMDYAAPVFYNSLPQYLKNEFVHLEKRAVSIITSGRCKLAKDIDIN
PIFDHHNLLCSKLFNDTINNPNHKLSTLLPPVNDHSRYALRHQRRFNVPRLRTKRASNTFIFSMIKQLRL
>JAM1_pol#LINE/RTE-BovB 387-3425 [Aedes aegypti]
LGGWCQALRASRKNTSAQERQRENTDRNNRQRPQRRKWTSDWKLGTWNCKSLNFIGSTRILSDVLKTRGFDIVALQEVCW
TGALVRTFRGNHTIYQSCGNTRELGTAFIVMGDMQRRVIGWWPINERMCKLRIKGRFFNFSIINVHSPHSGSTDDDKDAF
YAQLEREYDRCPSHDVKIIIGDLNAQVGQEEEFRPTIGKFSAHRLTNENGLRLIDFAASKNMAIRSTYFQHSLPYRYTWR
SPQQTESQIDHVLIDGRHFSDITDVRTYRGANIDSDHYLVMVKLRPKLSVINNVRYRRPPRYNLERLKQPDVANAYAQHL
EAALPDEGELDRAPLEDCWRTVKAAINDAAESVVGYVERSSRNDWFDEECQEVLEEKNAARAAMLQHGTRQNVERYRLKR
KQQTRLFRDKKRRLEEVECQEMELLYRSQETRKFYQKLNTSRKGFVPRAEMCRDKDGSILTDGREVIERWKQHYDEHLNG
AENTGTEGQDSEGDGYVSTADSGNQPAPTMGEVKDAIQQLKNNKAAGKDGIGAELIKMGPDRLAACLHRLIVRIWETEQL
PEEWKQGVICPIYKKGDKLECENYRAITILNAAYKVLSQILFRRLSPIANEFVGSYQAGFIDGRSTTDQIFSVRQILQKC
REYQVPTHHLFIDFKAAYDSIDRIELWKIMDENSFPGKLTRLIRATMDGVQNCVKISGEHSSSFESRRGLRQGDGLSCLL
FNIALEGVMRRAGLNSRGTIFTRSGQFVCFADDMDIIGRKFETVADLFTRLKREATRVGLMVNASKTKYMLVGGTERDRT
RLGSSVTIDGDTFEVVDEFVYLGSLLTADNNVSREIRRRIISGSRAYYGLQKKLRSRKIHPRTKCTMYKTLIRPVVLYGH
EAWTMLEEDLQALGVFERRVLRTIFGGVQENGVWRRRMNHELAQLYGEPSIVKVAKAGRIRWAGHVARMPDNNPVKMVFA
TNPVGTRRRGAQRARWIDQVHQDLESVGHSRGWREAAMNRGNWRNIVGEALSR
>RTE-1_DT_pol#LINE/RTE-BovB 198-3183 via tfasty with JAM1_pol, 1 frameshift. [Drosophila takahashii]
MKNTISVKEAREASERNRSNVDDHSKRKKDNDLRVCTWNVRTLYRPGAAQQLADTLNKCRADITAIQEMRWIGQGCIKEK
NCDIYYSCHPERHEFVVVARLRRRVSHFMPTNERIATIRITAKFFNISLICAHAPTEEKDDATKDAFYAELDRAYGRCPS
HDIRILIGDFNAKVGREDIFGATVGRFSLHEATSSSGLRLIGFAAAHNMVVRSTGFRHLDIHKASWLSPDRLTRNQIDHV
VIDARHTSSILDVRSCRGPNIDSDHYLVAAKIRTRLCVAKIARRSALRRLDIGKLQSQQAKDAFSTHVSGLLSRAPLIPE
DISDMWALISHSLRASAEEVLGFQRLLTRNPWYDQECHDATAAKDAAYRRTLQAGATRAIVDVYRSRRRDEKRLFRRKKK
EQERRECECIESSRCRNEARNFYQRVKRLTQGFRTGGVACRDDDGNLVTEAEVVLRLWRDHFSSLLSGSSTDSEDYDPRT
PIYGTDIEVPIPSHIEVKDAIQRLKNNKSAGADGLPAELFKAAGDMLVGSMHQLISKIWLTESMPEDWNLSMICPILKKG
DATVRTNYRGISLLPVAYKVLTSVLCKRLKPHAEALIGPYQCGFRPGKSTVDQIFTLRQILEKSYENQIDRYHLFADYKA
AFDSPRRDRLYAPMSELGIPAKLTRLCRMTLSNTISSVKVGSGQSETFTTKCGLRQGDSLSCMLFNILMESIIRKAGVHR
TGTILTNRCVQLLGYADDIDIIGRTKRDVTGAFGAIEKESAKVGLAVNREKTKFMVCSSRESRRLDSQLTAENYSFGSVK
EFIYLGTAITSTNDVSLEIKRRITLANRCYFGLSRQFNSRALSRRTKTTLYKTLILPVLLYGAECWTVTQSDAAALGVFE
RKILRKIFGPICVDDVYRLRYNHELYELYGDVDVASRVKSQRLRWLGHIARMDEDAPARKVFDAVIVGTRRRGRPRTRWQ
DQVMETLSTLGVTNWRRRAQDRDAWRHIALQAETR
>RTE1_Pca_pol#LINE/RTE-BovB 227-3250 91% identical to RTE1_LA_pol [Procavia capensis]
MNSSRTLSDMVPESEPPRLEGTRKTTGEELPPQSRVDLNDVDGVRPPGSSFADVARLKMRRNSCKHPLIIGTWNVRSMNL
GKLEIVKNEMERINIDILGISELKWTGFGHFESDNHMVYYAGNENLKRNGVAFIIKKNISRSVLKYNAVSDRIISIRLQG
RPVNTTIIQIYAPTTKAKDEEVEDFYQLLQSEIDRTCNQDALIITGDWNAKVGNKEGSVVGKYGLGDRNNAGDRMIEFCK
TNDFFIANTFFNQHKRRLYTWTSPDGIHRNQIDYICGKRRWKSSISAVRTRPGADCGTDHQLLICKFKLKLKKIRTSPRE
PKYDLEYIPPEFKDRLKNRFDVLITNDRRPDELWNDIKDIIHEESKRSLKRQERKKRPNWMSEETLKLALERRAAKAKGR
NGEVKDLNRRFQRAAREDKRKYYNDMCKELEMENQKGRTRSAFLKLKELKKKFKPRVAIVKDSTGKLLNDSESIKRRWKE
YTESLYQKELVDVQPFEEVAYDQEPMVLKEEVEAALKALAKNKAPGIDGISTEIFQQTDAALEVLTRLCQEIWRTATWPT
DWKRSIFMPIPKKGDPTECGNYRTISLISHASKILLKIIQKRLQQYIDKELPEIQAGFRRGRGTRDIIADVRWILAESKE
YQQDVYLCFIDYAKAFDCVDHTKLWLTLRRMGIPEHLIVLLRNLYMDQEAVVRTEQGDTAWFKVRKGVRQGCILSPYLFN
LYAEQIIREAGLYEEERGIRIGGRLINNLRYADDTTLLAGNEEDLRHLLMKIKDHSLQYGLHLNIRKTKILTTGPVSNIV
INGERIEVVKDFILLGSTINALGSSSQEIKRRIALGKSAAKDLFKVFKSKDVTLKTKTRLTQAMVFSIASYACESWTMNK
EDRRRIDAFELWCWRRMLNVPWTAKRTNRSVLEEVQPECSLEAKMARLRLTYFGHVVRKDQSLEKDIMLGRVEGQRKRGR
PSTRRIDTVAATMGLSIKTIVDMAQDRAVFRSVVHRVAMSRNRLDGT
>REX1-6_XT_pol#LINE/Rex-Babar 115-2979 via tfasty with CR1-40_DR_pol, 1 stopcodon. [Xenopus (silurana) tropicalis]
MEYIRYDRDTLVSIGIQCTHNSLFSTPDPGWPSEILRENKRRDAKRRPRGKRAGIRNRLRARAHRTPLPSILLANVQSME
NKLDDLRARIKFQRDIRDCNLLCFTETWLNPAVPDHAIQPAEFFSVHRMDRTRDSGKSRGGGVCLMVNNSWCNSASVVPL
TRSCTPNLELLSIMCRPFYLPREFTSVIISAVYIPPQADTDTALCELHEALTQYQTQYRDAVLIVAGDFNSANLKRAAPN
FHQHITCPTRGERTLDHCYTMVKDGYKAQSCPPFGKSDHATIFLMPKYKQRLKQEVPVQREVVRWTDQSMAALQDALDDA
DWDMFRNSSDDVSVFTEAVVxFIRKLVDDTVEKKTIRTFPNQKPWVDKTIRDALRSRTAAYNVGLASGDMDQYKAASYNV
RKAVKEAKQRYGRKLESQLQQSDSRSLWQGLRIITDYKTPTTAKTGRLNTDATLADELNTFYARFESEAKDANASGASCR
QENTAGTGSMFIISEHDVRRAFKRVNTRKAAGPDGISGRILRACADQLAPVFTEIFNISLSQSVIPTCFKESIIVPVPKK
PLPASLNDYRPVALTSVVMKCFERLVRDFIISSLPDTLDPLQFAYRTNRSTDDAISHLLHTSLTHLDTRRGNYVKMLFID
YSSAFNTIIPSTLTTKLEHLGLSSSMCQWISNFLTDRPQAVRMGGHVSASLSLSTGAPQGCVLSPLLYSLYTFDCKATTN
STAVIKFADDTVVVGLITNNDETAYLEEIGNLENWCQRNNLLLNVSKTKELVVDFSTKQERNYQTPIINRCPVERVDSFR
YLGVHITQDLAWSCHINTVVKKARQRLYHLRRLRDFRLPSKVLRNFYSCTIESILTGNIMTWFGNSTMQDRRALQRVVRS
AERIIRTELPDLHSIYIKRCWTKARKIVKDLSHPNNGLFTLLRSGKRFRSLKANTERMRRSFFPQAIRSLNHTTM
>HERO-2_BF_pol#LINE/R2-Hero 147-3581 [Branchiostoma floridae]
ESIPQHATKNHKEQYPQGCPRGGEDEHPIRTVQSVLTPANGESTMNAVCVCGKVCKNQRGLRIHQTKMACLRRVQAEHRS
GAVATTVEPVLSASAPGQTEEDQGPEAPHSARNLRATPAPPQGRKSDHHRVKWPAANSKEWSQFDEDVDMILESVSRGST
DQKLQSMCTVIMSMGAERFGTIGQRKPTDTMKPNRREVKIRQLRQELKSLRRSFKASTSGEERAALAELTHHLREKLRTL
RRAEWHKKKGKERARKRSAFITNPFGFTKRLLGQKRSGNLTCPVEEINLHLSNTFSDASRDVDLGPCPLLVTSPEPEVHF
DISEPTLKEVRETVKAARSSSAPGPSGVVYKVYKHCPRLVVRLWRILKVVWRRGKVAADWRQAEGVWIPKEEESSKVDQF
RLISLLSVEGKIFFKIVAQRLIKYLLDNQYIDTSVQKGGVPGVPGCLEHTGVVTQLIREAKENRGDLAVLWLDLANAYGS
IPHKLVETALTRHHVPESIQNLILDYYSNFWLRAGSSTATSAWQRLEKGIITGCTISVPLFALAMNMIVKGAEAGCRGPV
SRSGTRQPPIRAFMDDLTVMTATVPVCRWLLQGLERLITWARMSFKPAKSRSLVLKKGKVAERFRFTLGGTQIPTVSEKP
VKSLGKVFNSSLKDTASVQQTRSDLTTWLEGIDKTGLPGSFKAWMFQHGVLPRVLWPLLVYEVPMTMVEQLERTISRFLR
KWLGLPRSLSNIALYGRSTKLQLPLSGLTEEFKVTRAREVLMYRDSSDSKVSSAGIHVRTGRKWKAQEAVDQAEARLRHS
VLVGSVAVGRAGLGSCPKPRYDKVSGKEKRLLIQDEIRAGEEEDRRCRMVGMRKQGAWTRWEHADSRKVTWPELCRAEPS
RIKFLISSVYDVLPSPANLHVWGLAETPSCQLCQRRGTLEHILSCCPKALGEGRYRWRHDQVLRVLADTVSNAIQSSRSQ
QPPKKSIVFVRAGEKTRQQPTSAGGLLSTARDWQLLVDLGRQLKFPEHIVATSLRPDMVLVSESTRQVVLLELTVPWEER
ISEANERKRAKYAELVVQSQSNGWRARCVPVEVGCRGFAGQSLAYVLKLLGVRGFRLRKSIRDILEAAEKASRWLWFRRG
EPWKPHGHRSGNDQPRLGRPGEGVW
>HERO-1_PP_pol#LINE/R2-Hero 27-3626 [Physarum polycephalum]
MVTTRSMTSDAGRQKLPQASKPQDKKVKPQRSRLKSKEPDQHTSYVDAPVPTNKQTGTRSCVCGYSHKFHHRVILHMRTC
SSCKDSLTPEQQTKSLEANAEPSINPHSPSDTASPDCSDQDQQFSPYQTLDQDHFNKYTPQPKLKLPKPNDHTQWSSINK
ELEAVLHQRLNLEELHYRGITATVNAFLSIVHWFISIKCGTVNPAQTKKERQQEDKTRHRDQTKEMLRKLKAEIRKKWKK
AKQTKDKEAQKEARAKFRKVITALNKLRKQEQQVEKELIASTSRREFKRDPWQFCESRLGQYSSKGTRSSRSPSFDKGHA
DAFFSATYKDVGRDKSYTTPPQLEKVPPPPKSPFNLAPPTLGDVKYLLHKKPNNSCPGWDAIPYLVYKRCPILQRYIHSF
FTRLWDEQVVPEGWQIAYIILISKTEDTSKADQFRPIALGNTLGKLFFTLVQARTTEYVLQNSYLDISVQKAFLPKMAGC
VEHTQTLVSALRDAHQSQRAITVTFLDLKNAYGTVHHSLIAYALKRYHFPHSILEIILSYYDLLVAQVVTPNFSSKWVHY
SIGLFQGCTLSTILFNITYNMLEEWLAPLNVPGYCFKKTELEVKHLFFADDTTFVTGRYRENQTLLDHTGDFFDWTETMQ
ARPSKCMSLAYARVEKGHNHLVEVLEQKSYAAINPRLVLQREVIPVLFKQSFKFLGRRIGGTLDDEKQKQHLLSQCENML
ESTHQLSLSGAMKLWIYNNYIVAVLSWQMMIYDHAKVWGKRLEEAANPYLKIWAGLAYSATPGMLYQPTEQKGLGLKSLS
IVLSQLQVSKFHLLKHSQDPKVQALYNYKKEQTEGKKRWNAVSELEQLERTVALNQLTKGSQTGRAGLGNQKPPKTKDPN
KEHRREVLDACKKKELEERLIHLHSLAIQGQWLKWDEHMTTDRTWTNLLYHLPQELFEWANNAQLRTLPTPDNLQRWNRK
TTGDCALCHTKNITLLHILNCCSYSLHHNRYTWRHNGILKLIAQVVESNLNSLYKPKATQHITFIKAGEKAAKSTPKDPV
GILSLTNDWKMSVDLDRDTYSFPAHITQTSLHPDILIWSDKVKHILFLELTVPLEENTAGAQIRKLKRYHDLEQACKANG
YQTHSLTLEVGSRGWVAPSVGTCMRKLGIPRDQIKSLIRTLSNTALCMSYLIYVNRENRSWKPWEWKVSLLVGEQPALSS
>HEROTn#LINE/R2-Hero  43-3583 via tfasty with HEROFr_pol, 1 frameshift and 1 stopcodon. [Tetraodon nigroviridis]
LTTTNRVVTAWIDSxQQGKTATGAGRASNPACIFREEEPKTATKSPKQRYPQGSPRGGENELPKRTDNMATTQASVKPTA
VATCVCGKICKNPRGLKIHQTKMGCLASVQPEQRARFSLSESREVPARAEPYGPQQPHSPEALGETQEERGQESPHSAQN
LRAQVAQAPDNPQHHRRVKWPPASKVSEWQQLDEDLEGILESTAKGGVDRKLQTMTTLVISFATERYGTMEKRAAPEKYT
KNRRAEKISQLRQELRVLKKQFKGASEDQKPGLAELRCTLRKKLLTLRRAEWHRRRAKERAKKRAAFLANPFGFTKQLLG
QKRSAHLECAKEEVDSYLHDTFSDAERENSLGECRVLISPPEPACSFNTKAPTWKEIQTVVRAARNNSAPGPNGVPYLVY
KRCPKLLARLWKILRVIWRRGKVAHQWRWAEGVWVPKEEKSTLIEQFRTISLLNVEGKIFFSILSHRLSDFLLKNQYIDS
SVQKGGIPGVPGCLEHCGVVTQLIREAREGRGSLAVLWLDLANAYGSIPHKLVEMALARHHVPGPIKTLIMDYYDSFHLR
VTSGSVTSEWHRLEKGIITGCTISVIIFALAMNMLAKSAEPECRGPITKSGIRQPPIRAFMDDLTVTTTSVPGCRWILQG
LERLMTWARMRFKPGKSRSLVLKAGKVTDRFRFYLGGTQIPSVSEKPVKSLGKMFDGSLKDAASIRETNDQLGHWLTLVD
KSGLPGKFKAWVYQHGILPRILWPLLVYEFPISTVEGLERRVSSCLRRWLGLPRSLSSNALYGNNNKLTLPFSSLAEEFM
VTRAREVLQYRESKDPKVALAGIEVRTGRRWRAQEAVDQAESRLHHKELVGAVATGRAGLGTTPTTHLSRLKGKERRDQV
QLEVRASIEEQRASQWVGLRQQGAWTRWEEAMARKISWPELWRAEPLRIRFLIQSVYDVLPSPSNLFLWGKVESPSCPLC
QGRGTLEHILSSCPKALGEGRYRWRHDQVLKAIAESISSAMEYSKRLPLPGRGVRFVRAGEQPPPQPRAQPGLLATARDW
QLRVDLGKQLKFPENIVETNLRPDIVLHSQSSKQVILLELTVPWEERMEEAYERKAGKYAELVEDCRRAGWRSRCLPIEV
GGRGFAGKSLCKAFSLLGITGMRRRKAICAASEAAERASRWLWIQRDKPWTSASWTQAGN
>REX1-2_AFC_pol#LINE/Rex-Babar 200-2983  [Cichlidae]
WPSEISRENKGKRRRPRGKRAGVRNRLRARAHRTPLPSILLANVQSLENKLDDLRARVKFQRDIRDCNLLCFTETWLNPA
VPDHAIQPAEFFSVHRMDRTRDSGKSRGGGVCLMVNNNWCNSANVVPLTRSCTPNLELLSIMCRPFYLPREFTSVIVSAV
YIPPQADTVTALCELHEALTQHQTQHRDAALIVTGDFNSANLKRAAPNFYQHITCPTRGERTLDHCYTTVKDGYKAQSRP
PFGKSDHAAIFLMPKYKQRLKQEVPVQRKVARWTDQSVAALQDALDDADWGMFRNSSDDDVNVFTEAVVGFIGKLADDTV
ETKTITTFPNQKPWVDKTIRDALRSRTAAYNTGLTTGDMDPYKAASYNVRRAVKEAKQRYGRKLESQLQQSDSRSLWRGL
RTITDYKAPTTGMTNAAVTLADELNTFYARFEAAAKDSNNASASGANGCRQEDTASTGNVLVISEHEVRRAFKRVNTRKA
AGPDGIPGRILRDCAYQLAPVFTEIFNISLSQSVIPTCFKESIIVPVPKKPHPASLNDYRPVALTSVVMKCFERLVRDFI
ISSLPDTLDPLQFAYRPNRSTDDAISHLLHTSLTHLDTRRGNYVKMLFIDYSSAFNTIIPSTLTTKLEHLGLSSSMCQWI
SNFLTGRPQAVRMGGHVSASTTLSTGAPQGCVLSPLLYSLYTYDCVATTSSTTIIKFADDTVVVGLISDNNETAYLKEIR
NLENWCQRNNLLLNVSKTKELIVDFSTKQERNYQTPVINECPVERVDSFKYLGVHITQDLSWSCHINTVVKKARQRLYHL
RRLRDFQLPSKVLRNFYSCTIESILTGNILTWFGNSTMQDRRALQRVVRSAERTIRSELPDLHSIYSRRCWTKARKIVKD
LSHPNNRLFSLLRSGKRFRSLKTNTERLRRSFFPQAIRSLNHTTTQY
>R2-1_SP_pol#LINE/R2-Hero 83-3016  [Strongylocentrotus purpuratus]
MPPYVLIGSLLLFFTFQANCLRFNVPNLRATEWQPHNAAIKDRLTLLHHDLGAGIVTPKSAADDLTSILTEYFSGQDDFV
DKKLSDTYIEHEPKSLIQARKCKNVLRKRAFGKNGTAEDRKAFRAAVKTVSYLRKQDKQNKCDKSRSHMEKRYRNNFYEF
SKAACSGSLNESPTKPLFSEDVANNYFGDKYSTPNVINIGSLNWFPYVNINTPDRFEFDMTPIKPKDVKNVLRRKKAMSA
PGNDGLMYGMIKHLDSVHHFLATLYNKILDSGDPPESWSESKVTLIYKSGDTDKPENFRMISLTSCISKVFHQIIAERSM
SYLTENNFIDKTVQKAFIDGVNGCIEHNIVLHEILSDAKCKKRSLHTTFFDLADAFGSVSHQLITSSMERYAIPTPIARY
VATLYSRLNGRVRGPGWITKPFEFKRGVFQGDPLSPTIFLMCFNPVLEYLKEQQDQFGYKWGDRKIITTPYADDFNLITG
NKLQHQKLMNGINDRLKSMGLTLKPRKCSSLSLTSGKPNIVDFTIGSDVISSVHGHPIKFLGSLITFSMKTSEIFEYLKG
KIESTLENINKCNIRNEYKLCILTRYALPSLRYMLTVHDVHATHLKSLDIILDRYIKMWLGIPSRGANLAVVHDPDGFNI
PSISDLYRTCHCLAYSRSRVKGDDVVNHALDRRLERERGWSRQTSFSLEAHEIHSKIPDSVSWNQTKTVIKKAVQDVCRE
NWKRVIEPLLVQGEFMKVVHMESTDVTWKSIIYNLPQSVMKFSVNAAIDSLPTNKNLYRWGKRISDTCNLCNCTGTLHHV
LNNCERMLDRYTWRHNNILRIMLKHIKNTSNNSTKVYADIEGESINGGTIPPNIIRTQHKPDICHIDNKNKDIIIIELTV
PFETNIDKAHQRKQDKYASLTHEITSTGWKSKLICIEIGSRGLITPQNKYRLKEILKITDSTRYPESRDEILKAVLFSSY
VIFQGRREPAWQFDQYL
>Polinton-4_NVi_polb#DNA/Maverick 6-2315 via tfasty with Polinton-1_NVi_polb, 3 frameshifts. [Nasonia vitripennis]
MKCSYDDSLSYYRSYRGPNPAKWFVDELLQLAENIETVFWCPIPIETLTWEQEQSFQRATSCHICEKVLELDRVRDHCHL
TGRYIFSRNNNNNNNSAPMTSTILKCVSDIEEHEKCNLNYQDSRSVPVIFHNLTGYDSHFLIRDIAQCIPGRVNLLPINK
EKFISFTKHIDGSDINFKFIDSFRFMASSLDKLSSYLEDVNILKQEFNKDNQLTEEKYQLLRRKGVFPYDYVNSLEKLNV
SELPPKDVWNKFNISNLGQYSDLYLKTDVLLLAEVFENFRTSCLKAYGLDPAHYYTAPGLTWDAMLKYTNIELELLTDID
KVMFIERGIRGGISQCCNRYSRANNIYMGTDYDADQYSKYLIYYDVNNLYGWAMQQSLPYGGFKWMTETAISQTDFSSVD
DESAIGYILEVDLEYPEQLHDDHRDLPLCPQHMKPPGSTYSKLMTTLHSKERYVLHYRNLKQALANGLQLQRIHRVLQFN
QRPWLKAYIDLNSSMRKEAKNEFEKNLYKLMNNAVFGKTMENVRKRVDLKIVTKWDGRYGAEALISQPNFHSRSILDENL
TIIELTKTEVNMDKPIYVGLCVLDLSKTLYSFHYDYMKKQFGDDCKLLYTDTDSLIYELRNIDIYEVMKRDIEHFDTSDY
SENNTFGMPVANKKVVGLMKDECNGRIMTEFVGLRSKMYSIRVEGQDKVKKVKGVKTAVVQNSITFDDYIQCLQNMSTQT
REQCIIRSHTHNVFSEKQVKLALSPHDDKRYLLRGETDTLPWGHYKIMQTD
>Polinton-3_SP_py#DNA/Maverick 4417-5748 [Strongylocentrotus purpuratus]
MSLLHDKSDVCCKSELDLFTLPFTQMSILKGPWVEYHPVSNITDSAPIEFNVAGTAEEYVDLSQTMLAVTAKITNPDNTN
LAQEAPVGPVNLFLPSLFSQVDVMLNEKLVSQPSNTYPYRAMLESIMHYGKETKDSQLTQQLYYKDAAGKMDLLNPLLAG
ENVNEGLKKRHEFIVDSKVLSMLGPIYGDLFFQERLLLPGVDLKLKLNRSKDAFCLLSSNAEGNYKVKILSAALYVRRVK
TNPSVMLNHAKMLEKANAKYPLNKVDVRSFTIPAGNMSFNKDNLFLGHLPNRIVVGFVDNDAYNGTYGKNPYNFKNLLLN
YVGVTVDGESIPMKPLRPNFREGPGQDFIHAYNSLFMGSNRLFQDKGIDINREEYARGYTLFAFDLTPDLSDGCHLNLVK
QGNLRLELQFDNPLPNTVNCLVYSESQGLIQIDRSRNVVYDYQG
>Polinton-4_SP_int#DNA/Maverick 1462-2418 [Strongylocentrotus purpuratus]
MTCLEDTLRKLYYDPSNEGSFGGGVKLWRSLKKKNGFEKVPYETVKKWLEKQDTYTLHAPVRKKFARNRVVVRGIDDNWE
GDLLDVQNLKKYNKGYRYLLVCIDVLSKYAWAIPLKNKTGKTITEAFKQITSEGRVPVMLHTDKGTEFLNSEFQKYLKAQ
DIYFFTTENEVKGSVVERMNRTIRERLWRYFTFTDSYKYIDVIDKLMKSYNDTFHTSIRMKPNEVNIENQKQVLDVLYGR
QRLKRRGSRASQIFKFKVGEQVRISKSKLRFDKGYKANWSDEIFTINARIARPIVVYRIKDYNGKVIRGTFYERELQRV
>Polinton-5_SP_int#DNA/Maverick 316-1383 [Strongylocentrotus purpuratus]
MEWNNPGHYAGFVGVRNLVRAVREEGFESTSSQRVKNWLMKQDAYTLHKPVRKSFKRNQVRVRGIDENWQADLVDVQNLK
QFNEGYRYLLTCIDVLSKYAWAVPLKSKLSKDVVKAFESILQEGRVPIALHTDKGSEFINKDFQKCLKAHAIHFFTTENE
MKGFCIKRFHRTLRTRMAKYFTYHNTYKYIPILKELLKGYNATTHSSIGMKPSEVTIENQHRALNTLYGQRKESEKKTVK
PFSFKFHIGDQVRVSKVKMRFAKGYEANWSEEIFTIAACVKRKPPVYKIEDYNGERLRGTFYETELQTVKKAKEDRYLVE
KVIRTRVRNKRKQYFVRCKGYGKEFDSWVERVDDKR
>Polinton-5_NVi_atp#DNA/Maverick 8968-9630 [Nasonia vitripennis]
MDTRWKHPFTACIAGPTGAGKSWFLKKFLEHLPEMCDARFDRVLLYYTEWQETYRSEFKVGGSAAVPIEFREGLPQRSDY
SVDTGKKKLLILDDLMRESSNDIVLDLFSRSSHHLNLSVFLVTQNIFHQGKSQRDISLNSKYLVIFKNPRDRAQIRHLAR
QIYPEDPRFLQEAYIDATRGPHSYLFLDLTQAAVDEYRVRTCIFPSDDIQYAYVPKFGKK
>Polinton-3_SP_pw#DNA/Maverick 3902-4381 [Strongylocentrotus purpuratus]
MKYNYRNPSNLFRLTNGYSPSIRNQRGGTLPVFRGAPIQRGHGLGSLVKGLFRSAAPLLKKGAMALGKEAMETGFNIAKD
VSAGQSIKSATKRNVKKAGKRLATKTVKGIKNKMTSARNQGGGASLLLVRKVKRKGQKRKRIIRTPSSRGKRARSSDIFD
>Polinton-2_XT_px#DNA/Maverick 2574-3314 [Xenopus (silurana) tropicalis]
MEEEAFYITLPSNASLSTFPQNEISNYTVKLSKPVMLRGEWEVGLTEIQYPHTWNTFETDEGLFYVGIHGGPLKELNVKP
GLYNSVKDLVKAINDKIEAYKSPTYDVKLRYDELERIVTVKGTHSFLAGNKLTHILGIDSNNFNDSINGQLCADIKAGFY
TLFVYTDIIRPQRIGEFYTPLLRTVPITGSNNEIVTQQFIKPDYLPVSKHHFDNITIEIKSDQNRNVSFKYGKAIVKLHF
RPRRAYY
>Polinton-2_TC_int#DNA/Maverick 13634-14575 [Tribolium castaneum]
MKRSDLNIKRQVVNELHAPARVNFKRRRVIVKGLNDLLQLDLVEMIPYSRVNKGFKYILMVINVFSKFVWAVPLKNKSAL
SVVNAMSEILKTRRNVPKNIQTDLGKEFYNKHFQQLMNKYKINHYSSYSNLKSSVVERVNRTIKGMMYKEFSVQGHYNWI
NILPDIIKKYNNTRHRTTGLKPISINKKNERKVLDQVYSHLKTMDIYKPKFKVGDFVRISKHRHLFKKGYTPNWSNEVFT
VSKIQNTNPRTYLLQDVSGETIRGGFYTEELQKVKYPNVYLVEKVLRKKGNRLFVKWSGIDKTHNSWINSSDIT
>Polinton-2_XT_pz#DNA/Maverick 13127-13753 [Xenopus (silurana) tropicalis]
MEYAEKMYLVPKQDLDRLQQNSERNLHKQSSITSQLDAEIADILQRKDLNDGEKLYRYTSILQKYLVHAKQNEREKLSLT
LLMPPRESTTATTQDHPRNADISSTTDAMIQEVINNVNPRFRKNAELLLSKMSQSKHTVDWNEKGELVYKSVTIPGSNIL
DLVRCVTQSHYVAARKMPHGWTTFLQILAQLNIPSSVVGNSLHREYLIN
>Polinton-3_NVi_int#DNA/Maverick 5941-5024 R [Nasonia vitripennis]
MKESLVEEIHKPARRNYPRRSFKIRDIDETWQADLVEMLPYANENKGFKYMLTVIDIFSKFAWTVPIKQKSGKYVTKAMK
SILVKNRVPRNLQTDRGKEFYNKEFQQLMKNFKINLYSTYSNMKASICERFNRTLKSKMWKRFSLRGNYKWIDILQDITL
QYNKSKHRTIGMKPIDVNSTHVKEILTRLAAQKKLRQHKEAKFKVNDKVRVSKSKQLFEKGYTPNWSTEIFTVYKVSNTV
PRTYHLKDYQDKPIAGGFYEEELLKTRYPDIYLVEKVLKKRGNKLYVKWLGFDNSHNSWINKNDV
>Polinton-3_NV_py#DNA/Maverick 5472-6710 [Nematostella vectensis]
MAQAISEKINPNRIPREPFGLKAESSLNRITFNPSSASPGETLYINIPKLAENVVIVPGSVSLLFDLNVTGHANNTLVNN
VGRNLVSRLKILFGGETLQDTQRYDLFQTYHDLYLQAEDREDRIKQGISSENMRKLRTNAGDKATSDAKEVALAAVHNTK
YCIPLDHPILGEHGVFYPKALPHPLIFEITLAPVSDVVVYADTVKTPTYTITNLELEYACISSEYLAREALSAYQVGRGF
FYENVILHKTFTISKPNDGVINEHINLPRRSMTGILCLFTESYTGGARDSEKFVNPSITSININVDGMPNRLYSKGMTPP
DLWESVKKRFGREGVKQKDFYANNKFALWVDLRAHPDNSIHGGGLVLNNTRDGVKLEMKRKVGGTGNITCYMFVVADALM
EVMNSNLRAIMY
>Polinton-6_NVi_px#DNA/Maverick 4919-3978 R [Nasonia vitripennis]
MSDFHQEKNVLHQLVKARNAVKRKYSLLKFGKDNFEKAVEETFRPIVDPLQKLVESENKKSITAATSPVDNSHKNPFKRK
VKKIKSERPIDDDDETYKFDEDNESYWANSTMQDDGAETAYDTADSENETSISKPSLPFLNQANLDKIYGLRKENENYML
GNSIVKFEDKKIVVDNVEYPKTAGLMDLIAYRNPDKKIVSSDDMKNYRSILEATSVHKKKLNPKADIRSSNSKKYTDFIA
PLFFGKREKEGGALPRYKIARMNTRMDYVYWDDPNELVDRLRLLIAEQSAGNPSHVNEIHSIIEELREGGYIR
>MuDRF-1_DPu#DNA/MuLE-F 248-1881 [Daphnia pulex]
MSFIELYLPNTSILAQNWILSELGRKILIKELELPYDFPYPMEVASKLLRWEESSLSKKKSQSRPKNGNDLDCSKLIAYP
LHEPRPDFMLEDINLTKCSSFPKKDLKIGEEELVLHRVHCAGVKYCEGTNGAPCSFAVFNRRQENRCINHKNARLLKQTC
NSFFIFIHPKDRTDNRRWLGLLSSSNGRAGHCHNLQIPSKVPIKLKQDICEELRKDPTKTAKELQQGDSIGYSPCQFAPA
AAHNGTWISIVGKEYKKTEAGMGARGLIKNFHVKIKRSIDEKDRQIADNVDFDIEXVESSSPYRRLFSFGDELDIVVLAT
PQMLQVLADSMFVQVDVTYPGLTAFKYLMNFVAYNELTMSFQVVGRVLMNRVNKLAYKTAFTELFKVATETFSEFENGLS
VNAWVVDFSLAQRREWSRILGEKAGEHIRRLQVHFQRNLQNIADKVCPDEASKSLFVKIGHLIPKLEQEADLSLTFQILC
GEKSLQDCSFLKLSEDELKANTAKWCKATKxAKWWS
>Merlin4_SM#DNA/Merlin 90-1002 [Schmidtea mediterranea]
MKVDEFFANISTDEKAFNLAKSLGLITSNVRFCSRCGGKMNLEKGKTRHGIDVRLRCIKRYCRKTASVFENSIFEYGHLK
MRTVFMLFYCYSEKKTRYETSSICEIDMSTVTTYFSYFREAILKYSPFVSVARGEAPDEYEVDETHLYSFKNHQGRVLRG
QKYWVIGIINRRTKAVNLLVTRRRTKVICHDFIVRHAPVGSTIYTDKWGGYHGLEAKGFIHKTVNHKIEFVNRNNRSIHT
NRIERLWRSLKEYIRKSLRLPALIKAVQEFQIIWNLKIKTANERLDLLIDSIKKQSINFNPLNY
>MuDRF-1_PTrit#DNA/MuLE-F 596-4244 via genewise with MuDRF-1B_PSt, 5 introns (958:1038, 1274:1342, 1528:1603, 2115:2201, 2462:2528), 3 frameshifts [Puccinia triticina]
MSSPPLNPPVPDPPDVTVKWELPTDFESFHTFIDHGCTLDREDYPIYPNGATIFVKEADKIVVNFGSVGFTKTTGVEKRG
KGVWKVQRTYCLGVLVCDIDTCQWVGSPPTARGGIKEYLDREPKCPGAAGRCPGKVVWEACIGTAIRFDFHVPSGWALLR
HRGLHDHPWPKSKKPDPLARADLKAEIVKDPSKGAFKLKMGQANTLDEPISSVTNIHGSLVNADRLRYYRRLMLRELNIV
PDKLGAGVGDKFMMDLFQWNSRGLLVISSGYQXDSEHFTFQTKWMGERLLARDENNEVYQGGLISDVTYRFFENGYLLTT
SMFCEQTARWIPAQLSWIRGLSTNYYKLHFSALLRQFIRPDITPAERDLMARQVVDFSLAQTEGFKAAYMEVLDXTDPAR
AAKMIKGCHQHFRAQVTRVRRNRSILSADQDADFQKKCMALLDPIEEGGPTHEEKIDELRRLFPKTKRWLDWWTMSDIQA
MLFPSRRPMLDDHPDGSDGLPDTTNALESMHRVYYMISSGKKCLMVGMVELFGFVSVLEEEYNAVMCGVSVEYGSQTKMQ
VNISHSMGWAKPKKRKFINDGRPPDTTATLLDGPDPSTKKKNLGRPKNSLNVDRSEYSTYQSYTASEEPHLSNRCWMSAA
LESLFALYNPLWLQNSTGKGATLFYHLTMHFGARTTFNLTKIGRIRTVLTNAQTKLFNMCNEKHQANFQPGAFASCDFFL
ELLLDPKRNPTRALAGLFEVVEHRQFVCGSAEPCLIPQIRSLTPIKIEMKNFLENGLEPSDVLGLIKLWTSTGISKTPGL
VCRXCNQESTQNKPKPRGCPPKKPKDPSPEITISADEPNHTAEYVKETSRLAFKDDLPPQHLYFFMEVTQPSNPIERERY
MGAMDWPHQITILGAKYTLLSRGFWNGYHYWCKVLRTGRGTTTGVWLHDDRQNDGNARLVNTDASSIGGSHAFTSWIFYS
RVWTPDEESYVNSSIAKIRSAHPNAEGDIPFIHLGNLINPEQLFPEDLQQQTPWMANKANRIMIQIRQRRAIALTTSKIW
MVVIRMKIQSSIRMAFVAEASLTQVTVSKNLTLLSPWFSILSTPQQSDH
>472419_Afe#DNA/MuLE-MuDR gi|472419|gb|AAA27371.1| ORF1 [Acidithiobacillus ferrooxidans]
MQEALSILLGDEAKGLSPAVLGRLKAEWAQEYAHWQRRSYRKALCLLVGRRYLYEPPCGEDPRICLLVIIGVTAEGKKEL
VMVSDGLRESKASWLEILRDLQARGLETAPLLAIGDGAMGFWAALDEAYPETGQQRCWVHKTANILNELPKAQQSKAKAA
LQEIWMAANRQAAEKALDVFVRNYQAKYPKAVAKLEKDRAELLAFYDFPAEHWRHIRTTNAIESTFATVRHRTTRTKNCV
SRSSFLGLGFKMLQQAEKRWIGIYAPEKVLQLFAGVKFIDGIPANLTLPDDQQTAA
>MuDRF-3_MLP#DNA/MuLE-F 680-4558 via genewise with MuDRF-2_MLP, 5 introns (1399:1464, 1691:1766, 1952:2076, 2585:2680, 2986:3063)[Melampsora larici-populina]
MGQTFSISSAAPLENTGEGEEDLCPYASSHHTSEAIPDLTLENLFTTTPSSPFTIISTSDCSESSLDPLQSSSLETTPLK
SSRSRYHKSPSVITMSAQSELVTNTQDVFEDVDNISQSHVSETTDDEDVGPVKTRQLQLPLNKRKFATWIDEGSELDEQG
YPIYPNGETMFVKNAEDQITNFKKGIATIAWTHTMRTEHNNKWTIRRYYCLGILICSEKGCQLAGSPPTGHKAIEKYLAK
FPNCxVSGCPGLVNHLACYARCRVDEDTVEKWCLLRHQGQHTHRWPDPKKADPLAKEKLEEAVLNDPKLGPLGMKVGRAR
LGTQPIASITDIHSSFGHTDRLGYLRREILAKHGLMDDKNDKEGGDRWYTQIKHWSRKGMKIVSVAMDDDDHFTFQTKWM
AEMLVLKQEDGEAYSGGLLSDVTYKFFLNGYLLTTSMYNEKLQRWIPILLSWLGGLSTLHYKTHFATLFKQIQKTDLSDR
EKRRLVEQVVDFSAAQKNGFIDAYMEVFKVHDRKIAFSKLHGCEQHYQQAVTRISKNHKIVKVNMVGTWKTLCRELLLPD
EPGRPNLEQRFKDLRRLFPLAKKWIDWWYAADVQAMLFQARKRIPEDDPPLPEEESDDEEQAQPRRRADLPKTTNAQESL
HRVYYMLCDGKCGIIAGMIQLFAFVSSLERDYEARCKGISVTYGSSNQNWQDIVTSLGMAKPTKRRYVANDGRAPDTTKE
LLDGADPKSGKPSKKKGPGRPRGSLNINRSALTTYKSYTSGTTIGTLNRCWQTATLESLYALWGPLWSDHTHVNGTSLPT
IIIRHFTGRCDGELNEGKHLGSLLKRGQNIIHKAIQALKPESYTSDKFCSADGFMDMIVDHPHTRPLFAINVTKTLICHR
NDKHNRATTRSLGGFRLFPSMFRESGVAYGQLDILLQDLFSEGVLTEPGLVCRGCHPIKEKGHEEEDPTLYDQRMKIEDT
SLPLHLYFLMDNVMALDSKERGRYMGDTNWPARLEIGEAKYQMVTRGFWGGNHYWCQVVRSVEGVLGVWHYDELKNGGFS
QLISRDVDSLSGCIANTSWTCYTRVPFEAETVKIKHALLDMMKKFPDRHLSIPFTMPTSTMPFGGGLPSLEETDDAVLTT
TLPEEASLPVRNDADADEEFLNDNDD
>58582464_Xor#DNA/Merlin gi|58582464|ref|YP_201480.1| transposase [Xanthomonas oryzae pv. oryzae KACC10331]
MRADRSMVGPSLHRDQIMAMNRVQFQAGLSLPAFLKRYGNAQQCEQALEISRWPQGFVCPRCAATAHSRFQRHGTTYWQC
TACYRQTSLRSGTVMDNSKLPLRTWLLGMYLLGQSKTNLSALELMRHLGVSYPTAWPMKHKLMQVMTQREANRKLGGIVQ
LDDAYLGGERNGGKAGRGSENKRPFVIAVETTEDGRPLRAVMDPVPGFTKAALSEWIGQRLHPGADVYSDGLGAFRALEA
EHAHTVIEGSGRSRCEAENARWVNVVLSNLKRSLDGAYHAFKFAKYAQRYLAETMWRFNRRFDLTRLVPSLLAAAAASKP
WSERALRDVTLFTAESAC
>39582861_Cbr#DNA/Merlin gi|39582861|emb|CAE71637.1| Hypothetical protein CBG18604  [Caenorhabditis briggsae]
MSAQAALLSLRSFNLFSGWPEVASMTKDEFDDYLAAKGLFWKNRPCPNCHEPRSITHEISESGEPIRFKFECYKRKCKAS
RLVVKVGLLKDTFFEGLHCDRKKRFLFSFLYVTSSMKVEEMARNVEVDPNTCVQWGQWIRDVMAENFNNPAIQIGGVEED
FFLQLAPIDETNIVKRKHNVGRMVRDGWLVGGIQDGTRSVFVEITGRRDQASLEAIITRYVTRGTTIRTDCWGGYNGLAA
LGYVHETVNHSLNFVNPTTGVHTQRVESLWSQLKKEIKPKCGLRGDNWDDHWFQALWMFKYHEESKFYELWKQISEKYPL
N
>15790046_Hsa#DNA/Merlin gi|15790046|ref|NP_279870.1| hypothetical protein VNG0918H [Halobacterium salinarum NRC-1]
MMPIKTFVSERRAANLLAQIRWRNGVYCPSCRAESVIRYGSYRVFQRYLCKDCDRTFNDQTGTVFEHSAVALRKWFLAVY
TYIRLNTSIRQLDAEIDVSYKTVYRRVQRFLRALDAPRPHLEGPVEIDEFYVKAGLKGRERDQPSRSRGLSTRGRGTYAE
DKLPVFVLADRGTGERHVIPAKAATESRIRLLLADRQQESLTVYTDGFRAYDPLDEDDAFTREYVVHGDGEYVNGDVHVN
TCESHASLARRWLSPHRGVSKDRLTPYLRAFQLRREVFRKPGKEALKTILETAL
>39598301_Cbr#DNA/Merlin gi|39598301|emb|CAE68994.1| Hypothetical protein CBG14981  [Caenorhabditis briggsae]
MNSLEYLIANPHVLSDSSIVDALTALANSPNMENHDEEYDMEVNSDDEMKIDISALINPSVFNSMQLPIGTGRFPNPSPP
RSNSGTHTPIRKTPGSRPDRGKFTILDGTEVAGPEEVLNVDFNSEILQRIFSDPKLGIQFLARYGLIPNTRVCRVQDCPK
DQLMSLIKHANGFVWRCRSCRKRREKRIITKISVYEGTFLFYSRMPLNKFFIFMLIWCENPGLSITEYNRLMGENRLVEE
TIYNTIGFMRDIIQNWCDTIITSNVPIGGPHRIVEVVETLSTEQLSNKTRNRRTRHYTTRTVFISLADDKIKSVDFPLHN
VHDLERALLECVQPGSIVVMRDSFMERFGQQEEISNALFNHYKVKSICDVWLDFNEQERSKQFIKTEMNQVPNVSQEPYA
YEYFFRRCFADKCFNHLLRVIRLLYQK
>56208014_Dre#DNA/Merlin gi|56208014|emb|CAI21210.1| novel protein [Danio rerio]
ESKASGFQLYISCICYSAMLTGKLNKIIRLCSGGKHRKLVIKWLQRKGLLCKAPHCRQCGKKMSIKAHSGRDGYIWTCRR
NKHRRITLSIRKGSLFHNSRIPLVKWMEYIYRFSQGLHLRQIDLMDDGVAKTSTTLSRMNKLLRKVCIKALSNLKRRTGL
RVGGKSRQKFVAIDESKFAHKRKFNRGRFCTTWQRRKGWVFGMMEVKGDRRLPVLKMVKDRSRTTLVPIITRHIRRGSTV
YSDNWRAYLNALQPLRYRHLTVNHSENFVDPQTGCHTQHIERAWLAIKAQVSRLRGNKTTKLLREHLKFIQWHYWLGRRN
SKGALAQLIHDIRKAYRVD
>46156348_Hso#DNA/Merlin gi|46156348|ref|ZP_00132935.2| hypothetical protein Haso02001362 same as#DNA/Merlin gi|53729014|ref|ZP_00134265.2| from Actinobacillus [Haemophilus somnus 2336]
MAQHYLLSSKSKNLNLKKIFRLSEDEAFQLLKANRWGNPDNIRDVCCPHYGVRHHAYFLESRKCWCCKHCKRHFYITTNT
VFAFHKLPLVDLLAAIALFVNSVKGISAITMSRHLNINYKTAFVLCHKLRETLFKTRDLSPLQGEIHEDGAWINFRLRKP
NFRKNRYKQRDKKTKLPKFRPTKRCIINFSQRASNDENLWGSNRTLVAMDYSESAETILKMNHQFVKSGSHIMCDENPAY
SGLDFHYTRWSVNHQEAYSYQGINNNLAESFNARFRDLHRGVHHKCDNKYALHYANQAAFMSDSRQKSNGELFNDILKRC
LWVLPLREWVGYWQGNHRTQELIGITAFSPEEISQTYFKNLNEMMKYEQELLAA
>Polinton-1_NVi_py#DNA/Maverick 11783-13012 [Nasonia vitripennis]
MSKSHQSSANVKNANTAKDSVSKKPRLKSWWKITCIFFCCQNGRNSHYEIHAHQPYNVSSYNNSDEIRISVQHQDLCLLP
SASSLYVCGRLTKADGTLVKNTKFVNNAVCHMFEEIRYVIWVSINPSQSLIIHNAGWLDVEEKENLINSEGYFDISIPLS
MFICFTEDYRKVVVNVKHEIILTRSRNDLNSVIQTPTKVATATTAAEYENFKIELMKVEWLMPYVVLSNQHKIRMLSHIQ
KGKSIDMSFRSWELYEYPLLPTTPKHVWTVKTSNQLEKPRFVILGFQTNRKEAKEINASRFDHCNISNVKLFLNSQYYPY
GNLNLDIERNQYAMLYDMYANFQHAYYDKSIEPMLKKQHFINYLPLIVIDCSKQNEALKNASVDVRLEFESKDNFPAGTS
AYCLIIHDRS
>Polinton-1_GI_pgi2#DNA/Maverick 5690-2775 [Glomus intraradices]
MAAIPPDPITEILNNRTTIANSVAGIRIHLDRTTIAAHPHINHLFNTANDSLDAIIRYANELRNIIEDQDNMEDRLEGLL
DDAHNREEYLRHELNNTRATILRTRRTYEDAYANKVRHRQHWEVLAQNTQIQLANIQAQYANSQIQLANVQRERDESRRN
AHRLLQRYNTETERSRRRANGIIQQARAWRGQFLNCRNHSQNLQNQVNNLNQQILALQNNPPVIQQPIMAGYAPKKFRGA
SGEDPELWLQEFRQWCESAGLDPAANARTRVRIHGVFETLLEDDARDWYETHIKGKNWECVNLLDNTGVANLAAFNALNN
GAIQAVAANQFRGGANVLHGQAAAVNTITGANFIPDHTVWDEDWSTAEGRPTDIAVNNPNANNGGTIVAPGIRIGQLIYR
FKHYFPTITSEKSKLAFNAIVQGSDTVSRFYSKLRRMVRLAYPTLPEVNQNELVRQQFLNGLSSENKLDARRIGLENSVA
SILNKLEEVEKYRTDMPPTPIVTYQDPTLADIENLINSKIPMTTARSSAVPVPSSSPFSSPQNDTSFQRLLALAYKLGLP
RDIDISKVTLSDLEIFIDTELNKNLPSDHIYRGNQVFGISSGTRKPKKSKKCSSCGKSGHTKSSCPKSKKGKRKTNYAHD
SSDSSNSSDASDSSDSSDSDSDSRHACYGLKKKPTERKRVDKKPTDKKKSQLERQRIIFEVFIQLLKLLVQSFVNAVPKE
TVISAYNALNAKFINYKEPVLSQLKGEPSIKTREKVWDNVKDLFTSILHPMISVVTNSMAANLIRKNDDVICNNDLWSSI
AGIGIVNRKSASDVVTIKTKVVAPESEKSLVIPTTIFDTGSDSSLISNNIVKRLNLDVDRSNAPDLSGVATKSDTIGTVY
GLGILVYDGENSKKIEDDFMVVKSDKDFLLLGVPWIDRANVILDFQNRQLTIPLSSRKKITIPISLHKRKTNVTSLQMDT
IDLKKIHTLEED
>Polinton-1_PI_polb#DNA/Maverick 2621-6591 via tfasty with Polinton-1_EI_polb, 3 frameshifts and 6 stopcodons. [Phytophthora infestans]
MFAYELEGLKRLNIQAIKWGSSYRVKVRGRTGKMVYVSNVSRPINQRLVAKQYNASTETLEKHLSPDYKADPKYRFYNGN
HMESHLYEGVEATDFYDKLENVLSTQASAFKVNVALGYELVSKTDPDDTRYFYPNLANTYVFNKPVAINSKADIRKKVIS
EIRSMELADKLNYPSSGYKLKAITAFKIFVYHRDHALGDSDAVIPKIIRENKHVINFPKTNNKCVFHCIAWHTFQSPKKD
PRRIQAQVKEVFKRYCSFKGVKYTLSLFRSFKPIDLLQLDEVEDCFQLGINVYSMDVASGNVECIRRSDKGYEAMDILSF
ENHALYIKNIDMLQAKYQCPKCAMVFVSAERVKNHKKNQCELVNIESFPAEPTIYKPAQNVIQSLLTKYSIKNTDQYIDH
FIVYDFEAILKPTATQHGENTVFTNEHIPVSVSVADSLAEGVRCFVNDDPKMLLTEMFNYIGDVSVKIQQYNVNKYMSLL
RKIINAHGLTGMEVPGANSDKKYKMSDVEIWIEEGKYASFFDFHRSLGFGKQRSDYGKLKQQLDQVPVFGFNCGRYDIWI
KKDLFAVIGTDSVKSVIKNPSYMCIATSDMKMLDITNYVPAGTSYDKYLTTYLGGCKCDDKIRCVCGLGKGLFPYEYITA
FNVLKQTTILPKSAFDSKLRGTSITSDDYERVKFVWDYHEMxSIKDLLIWYNNLDVVPFTKAIKAQRELFKRFDLDMFAD
GVSLPGLSEKVMYQTCFNNLQYPDKKPANAFRFPAKRMAGYKSQDAKAKRKFGMTLEHVNTLLQKQKYLCGLCYCQLTAD
TASADRINNNLGHTDGNILISCISCNNRSKRYVSSGVQIQETAxFxRRQIGVFDxQGGIxDLRRKxNIAGGPSIIFSRYA
KRNETKIRGAKICKKIIGYDANALYLWALGNEMPCGRLTTVEAYDGIIDDIKADKVFGFLECDIRTPEYLKQYFGEMTPI
FKNVLIDCTNESVIGKHMFEHNEARKQSRAKPARKLIGSYFGEKILIYAPLLKWYLSHGLEITETYSFIKASSHKDFAPF
MEAVSNARREGDVDKSKAMIAEMMKLVGNSAFGRSGMDMSKHKEVKYESSDKAIKNKIEHFTFHGLEELNDACEITMKKR
RLNNKNPIHLSIAIYQLAKLRMLQFYYDCINFYFVRSDFQYQEMDTDSAYIAFSCDNPFQDCIKPELRTHFKEHKYDWFL
RDYNIEVAKFDRRTPGLFKDEWSGDAMVSLSSKNYICYLPDETYKVRVSAKGIQQGSGRNNGVLNPDGFETVVRDRITLQ
GTKRGSDYRKKPSLSSPILKPKQRLTTTMTNVEYLMMVSRLNHL
>Polinton-1_SP_pw#DNA/Maverick 4152-4514 (Polinton-2_PW_atp > 92% identical) [Strongylocentrotus purpuratus]
MEYGRGGGGGLPVFRGARMQRGYGLGSMLKGLLRSAIPIVKSGGKLLGKKAWQTGLNVVRDVANGKSLASATTSNLKKLG
QQFTSNSSGRVKKKVKRKRPKKDPVSLPNAKRRRTSDIFDR
>Polinton-1_PI_px1#DNA/Maverick 13987-14754 [Phytophthora infestans]
MRGLIDSMYNSEYNIDATQFLNNSFKIEVPTVGATSTVSVILPDGHYSYTDINRSIQTALVNAGAYLINPSGENVFYIQL
TENSVYYAAQFDFSATLTTLPTAGGTWTRPASGLYSSGGTGLPTTTRVTRIIIDNASFGKVVGLTAGTYPSASATVLSAQ
LSNTIPQIHPTSSYIVRCDLIKNEYVASGDILSAFDRGDAQVGQLISYKPSQYAWMNCHNGARTSITISIYNQNDQKVKF
RDTSVSIMLLLRPKK
>Polinton-1_DY_px#DNA/Maverick 9296-9841 [Drosophila yakuba]
MNYVNDFFITLLSNDSLNVFPDNVKCAFTNIVNIPEDMNDDWEVGITDMYLNNYISKTTAKETNLSEEAEFVSLVNAETF
RYKNVAVESKISECGLIFIYTDIIKPRSVGSMRPRCLRVMHYNGKEKNIHFKNIEYYPLDIWSPNEISILITDSSGYKVP
FETSAVPIFVTLHFRKRRRSNL
>Polinton-1_DGr_px#DNA/Maverick 7776-8747 (reverse) [Drosophila grimshawi]
MNEHILKELTKTRNXLKRKFQSIKLGRAANEYQLEETFKPITQPLQKIVTGNILANQLMKVKKEEEKGQVNSRNEIKSDE
NFSSIAEYYDALEKGISELQTEDLSLAPSEESYNKPDTISSKDYNQTNEITDEIFNLSLNDLDRQKKLDKAFGPTKKSGQ
IILGSSKISIYHKKIELESGEKWNLTPGLYSLIYLKDPKGYDETDLDVYQKILLKTNAHRKNHLPDGPLKGNRSKKYTQI
IKKLFSKNDNPSAMSTPLNKKSMHQGGSFMTLSSTKPNYVYWDDPNEIVARLKLLVGSQAAGNTNHNNEIVSIVEELREA
KIIY
>Polinton-1_DBp_int#DNA/Maverick 5369-6295 (reverse) [Drosophila bipectinata]
MSKQQVVDEIHKTCRKNFLRRKFVQKGLHDTWQIDLVEMIPYSNQNNGYKYLLTVIDTFSKYAFAKPVKSKSAMDVATVM
KSILKDSKYKPKNIHSDQGKEFFNQLFKELMKKNNINHYHTFTHLKASICERFNRTLKNRMWKMFSFNGNYRWITHLNSL
VEDYNHSYHRTIKMRPIDVCKQNEEFILKTCYNIVKVFPRHKYVVGDHVRISKYKGVFVKGYEPNWTTEIFTISKIKTTF
PVTYELIDYKGDPIKGTFYEAEIQKVKDKSAFLVEKVIKRKKDQICLVKHWLGFDETHNSWINKTDLLK
>Polinton-1_DR_int#DNA/Maverick 2875-3954 [Danio rerio]
MSDIMKKVYYDPSSPGALGGKKRLKDAVFKETGVRLSDKQVSGWLAGEDAYTLHKTAPIKYKRNRVVVYGMDTQFQADLV
DMTAYSTENDGNKFMLTCIDVFSKYAWSRVLKNKSGVEVTKAFESILEEGRVPRKLQTDQGKEFFNKHFQDLMKKYDINH
FATATDLKASVVERFNRTLKSRMWRFLTATNSRRYIDVLQDIMTGYNNSYHKTIKMRPIDVCKENEATVFQNSYGNIKIQ
KPVFKFKVGDVVRISKVRGPFAKGYEQNYTEEFFTVSECIPRQPPVYKLKDYDGDVIEGVFYEQEIQKIFVNKNKSFKVE
KILGEKKQGRSTLVLVKWLGWPSKFNSYIDKKTLVDLQKP
>Polinton-1_DY_pro#DNA/Maverick 11652-12107 [Drosophila yakuba]
MNTLQIHNLLTKHIYTKSIFKGVFPSDQLPKTISKYPALIIANTDTSDQPGTHWIAFYFESRKSAEFFDSYGQFPQNKEF
VTFLKSNANKYCYNKQQLQGYFSNTCGHYCIMYGLFKCKKKTLKYLLTNFKRNDFSYNDKLILKMFKSNFKK
>Polinton-1_DR_pro#DNA/Maverick 6621-7154 [Danio rerio]
MNTIQLNAIMDKITCNTHFLGTLASDQLPERPLTNLPSMVIINTHPSELPGEHWLAVYLSEDGVGCFFDSFGNKPDSDGF
PIAIKNFLMRNSTVTRYSTKRVQDFMSNVCGQHCVFFLYHMSRGRDYNYVMNLYSENYVKNDKMVELFVKKLKANVCSDN
MYLCNHCVQTCNSSMMYK
>Polinton-1_TV_ptv2#DNA/Maverick 13978-12350 [Trichomonas vaginalis]
MIKQQQPQQLKAQSTQVLQTITYAIYAYNSKTAEQTQRLKYGDLEIVLKNDHFEFVCKGGAVISNIKEILFMNSKIKGIT
DDITSIPPEEQRYYALNAFPKVLKIGRFNLNEEFIKGFLNDIMKKADKEYVASELMKKANLVYVDEKDNEIKERVEWYHE
WTSKIFKTKADTGWVSGCLDLKADKTYVNDELEKKADKEYVNEIYQSLIGTTKNIETIVGDFSVNEENKYFRWQFVQSLK
NGTRCKLIPKNNNEMYVSYKKNDGTQVKVPLDNNCYLNLYGDEQKKYLRVYEMADMTLPDPAPAPYYYDYGDDDRTPHVD
EQKLTLYLDYYRYKRYNAIEKTRIVYYYTDDRNKYYSQDFTYPENIRLYYKKYSDTNQKKPEIVALYFKFKRDNPIISHM
FDLMNPVGSIYTSMDARGPQVMFGVGAWEQIVDRFLYCANSSKETGGSKTISGENLPAHSHYIDLSTSQAGWHKHRYWDW
SGMTKGKGYDVKDDVKFAINCYWSDTQGEGNHTHFVSGYTQTTGQSKEYMPPYMTVYAWYRVQ
>Polinton-2_NVi_pw#DNA/Maverick 4455-5072 [Nasonia vitripennis]
MNRYEDYFNCQFGNGYQYGGGGGRNPYTGGVGHIYIGSPYQRGHGGIGSFLAGIFRRVLPLISRGAKAVGKEAVRTGFNI
ISDVASHNTPVKESFRNRVRESGEILKRKAEEKLDKLMEGSGYKMSRYGNPAQLQLLAGPVTARRRKRGVGGRKKRKSRS
GGGVKKRSATRKIKRQKKKKKTSRNKKPSSRRRKRSRTTRDIFDS
>Polinton-2_NVi_pro#DNA/Maverick 7078-7605 [Nasonia vitripennis]
MDSLQILKNLSKIRSHTVGVFPADQIPKVWTKPTAFVVNTDDHTRSGMHWVAVYADKSCNAFYFDSFGLPPFIPDHINRL
RKNCKHFRWNNIRLQSDSSDVCGQYCIMFLHYMSNGLGFKKFLENFSENLQKNDDVVRRYVCCKQRKKSDDDDFIGNGSC
IVRCLQSCSSKMSLL
>Polinton-2_NVi_pz#DNA/Maverick 964-1929 [Nasonia vitripennis]
MEHAKKMVLVPHENVERLQSVLANGVRDNNVGSILKTVQTPGNVMTRLDAEMSNILNSSTCKSEREKWSQYRSVLQRYLQ
FKDVDSYAKVMKKEEKDKEQRQMKKKNDNDYDKGADDNYNDDDNDIQRVEEEDRIDASIIESVPPKYRRKAGHVLRKLRV
SGNITWDANGGVTIGGVRIHHANMIDLINDTMRNRKCPPPLGHTQFAVALRESFIPREFIGNKRVWKNMMAGTSPGNSTP
VPPGGASGVIPRRVLTPEGINRLFRTPSPRRAESASRANSSAIDSSEADKSSSGTVAARVLKRKKTVAGQASAKKSSSIH
F
>Polinton-2_TC_atp#DNA/Maverick 11237-11968 [Tribolium castaneum]
MCKVFLFVFCKSTMKLVQQKDLLKISNHDYSVCVPYQHFPKHNTLFNNSVKRGLVVGRSGCGKTNVILSLLLHPNRLRFT
DIYLFSKTLQQPKYQFLKSVLAPLDKVGYYEYEDGAEIPPPKEIKPYSIIIFDDVVTCNQNIIRDYFCFGRHYNIDCIFI
SQTYSSIQKQLIRDNANFIIIFPQDVLNLKHIFNDHVGTDMSFETFQKMCSQCWQKPYGFVTIDKDAEQDNGRYRNGFDQ
FIKI
>Polinton-2_SP_polb#DNA/Maverick 13689-9511 [Strongylocentrotus purpuratus]
MPSTNYTRAGPSTSHDVAGPSSTPSTSYTRAGPSTNHDVAGPSSIPSTSYTRVGPSTSHDVAGPSSMPSTSYTRTGPSTN
HVGGSSTRATKRQAETLPSRVTPLPTHRVTKVSERHVKKYNARVMDYNIAFQPAENMGPMLDMMPRVNDMFENIIDEMMV
GVRDRDFVRLVLNAPQLDRPVSLPFIRRDQMNYQVFASKLESTLQSHEDITLDENLDFNVLHMAMQEGGRTSRRIVLNLK
ERLLSKMSIIQIKNKDNMCCPRAIVTGFCRIEKHPNWESIRKGYKEQRTYAEDMYRQAGIPINTKCSIEEIRKFESTERM
AKYRVVVVSKEHLDFIIYAGPEEREHTIYIYSHDDHYDLITSMSAFYNKSYFCENCFKGYNAKNEHTCYNAFKMCRSVEC
PPPSENEDHIHCERCNRNFKNRRCFQNHRSNKVCERYFQCEHCETLCNNVLLKKQKRKHICGQTVCKICRKFVDPGHQCY
IQSENPFATRAAMNDENDEREGDENRSQDNDDDERPKKHANFVFFDFECTQDTGKHIPNYCVAQRACGYCADIPFEQDCK
ICGKAEKKQWVFQGPRTGDDFCEWVFDTEENRGATFIAHNFKSYDGIFIQEFLYRNCIIPRLILAGGKIMSMTVPNNGIR
FIDSLNFLPMPLSALPATFGIEEVKKGFFPHFFNIDANMDYRGPMPDAKYYYPESMSSKKREEFLTWYDGEVSSGREFIM
SEEIHAYCVSDVDILRRCCLQFRTLFKEVTKLCEFDLGVDPLTKCITIAAACHLVFRRNYLQKDAIAIIPPRGYAPEDIQ
SNKAIRWLTHVAEEERVYIRHARNEGEVRVGKYKLDGYCEENKTVYEFNGCYWHGCARCYSFDTDSGRRGVQKTMGELHL
DTLAKKKYVQHILKDWNYITMWECHWDEEIGKTIPQHIKRRLPNPIPLDPRQAFYGGRTNASCMLYECQEGERIKYVDFT
SLYPSINKYGSYPLGHPRVITDNFEDVSEYYGLIRCKVLPPQNLFHPVLPLKVNGKLMFPLCLTCAETNQQTPCHHSDGE
RMLRSTWVSLELEKAVEKGYIVTEIESVWHFCNKSKFNDEKPFLERSREDFGLFTGFVNTFLKIKQEASGWPDWCRTQEE
KAKYISDYKKHEGIELDPEKIVKNKGLRSLAKLMLNSFWGRFGMRNNLPETSIIFDPAQLYELLTSDEVEVNDLNFVNDD
VVEVRTVRRDEFEKVSSKANVVIAAFTTAQARMKLYDVLDRLGERVLYYDTDSILYIERLHVPGEWCPPLGDYLGELTDE
IDGKHITSFVSGGPKNYAYKLNTGETTCKVKGITLNYKNSQVINFETMKRMVRRVEDDEQEKVTVTNPYQITRVHKRQRI
ETRVASKDYRIVYNKRVVRDDFFTVPFGYMTAN
>Polinton-2_NV_py#DNA/Maverick 11448-12758 [Nematostella vectensis]
MSAARVFDGSQQVANPGVGLFTMPATDVALKDGKFIPYTPSDESVDHIEWYIHPTTTYIDLQKTHIKLKVKITKANGRTL
EVNEAAAFVNNVGHSLFRQVKVELNNIPVTLQTDSYPFKAYISNLLNYTREGQDSFLGCSLWHKDTAGSMDAAVITGVPA
TNLGLNKRATYTALSAEVGLIVNLDVDIFKCGRYLLSGVPMKIRLEMSKAAFALMGGGKFVITPGSTLRLYHVTPTDTVA
LTHANELLHHKLAKYPVTTAVVKTEQVENGKLTKKFNDLWNGLIPKRMVFGIITNAAYAGSYAKNPFNFILTDITNIELR
VNGVETPFTSIKNIAGDAIDLYYMMHEGINGKAARTKGLNINRDEFFGGYGLIVYDLTAAGNASSGYFQPQYKGTVSLDL
TFSTAPTEVLTVVLYGEFNNTMEVDAARSIMYTIQG
>Polinton-2_DR_atp#DNA/Maverick 9024-8332 [Danio rerio]
MGFDNVFGHGGVQDAGVFDFRFQHPFTCIISGPSFSGKTFFVKMLLQNCEKMFSKNVENVIFVYNSWQPLYDDLLKMYDV
KFIKGIPESFDDDHLFPPEKTNLLILDDLMDECSNNLEVSRVFTQYSHHKNMSCIKIVQNLFIQGKFSRTISLNTNYLVL
FKNPRDSGQVNVLARQMFAGNTKFFMECYHDATSIPHGYLLIDYKAHTPDQYRLRTAVLSDRPVVYIQKRK
>Polinton-1_XT_pz#DNA/Maverick 12287-13048 [Xenopus (silurana) tropicalis]
MENADKMYLVSKLELDRLKRPIPTVPDIRQSVTQRLDTEISEILHRNDLSDDEKIKRYTTVLQRYLVFAKQDAKELSTLT
LLMPNSTQQTPSAISNEDNAVPEILRHVNDRFKKNAELLLNKLRQAGEITSWNERGEFIYKGKTIPGSNMLDLVRTTTQS
HGMIKSKMPHGWDSFMHAMAELNIPSTVVGNSTTRSLLDNVKIQLHGASSPLNTMALGPYKKQALTPASPGLTQGSLLPK
KRGFPLLQTAWLTL
>Polinton-2_DR_py#DNA/Maverick 5154-6458 [Danio rerio]
MALLHTMSEECLKSELDLFTVPLTQTAIEKNAYIEVPPLSAISDTSPLEFFIAGNGEDYLDLNNTLVFLRLKITNPDGTD
IADGAPVGLINYAGATIFSQVDVSLGDRLISQGSNLYPYRCIIECLINYGKDTLESLFSAGLFYKDTAGHMDTADPAGGN
HGLTKRAAFTNASSVLELLTPLHSDIFFQEKLMLNGVDVRIRMTRGKDEFCLMRSDAVAYKLSILSASLFVKKVAVSPAV
RLGHAQALLSTTAKYPIDRVCVKNFSIPAGSRVCNQENLFLGTLPKSIVIAMVDNDAFTGTYAKNPFAFKHYDAEFLSIY
LDSLQFPSKPLQPDYANGSAVREFYQLVLASGKHLKNHALSIDREDFLNGYTLYAFNLTPDEDCGQHISLIKSGNIRLEA
RFRQPLPRTINLIVYAIFDSIIEVSNRRQILVDYF
>Polinton-2_NV_int#DNA/Maverick 7477-8790 [Nematostella vectensis]
MAKPPTKTKVEKEYGTKRKKRRGRVATMIVRKKEGRGKKMTKKATYHLLHQIYYNPEHPAALGGVDKLLRAVRSKGVSRA
QVEAWLRTQSTYTVHKPYRRRYSRQRVIVNGMDEQWQADLCDMQAYSSVNDGYKYILTVIDILSKYGWAVPLKDKTGPQI
VKAFEGIFKGGRQPEKLQTDDGTEFKNRTFQTFLKSKGIHYFSTRSELKASVVERFNRTLKTWMWRWFTHKETRRYIELL
PELVNNYNHSYHRSIRRTPADVVTYDDAQEVWGVLYGGKKTDVKTKKKKKRPPPKFHVGEKVRISKVKHIFAKGYTPNWT
EEVFTVGQRYNDPKQKDYAYRLREYDGSWLEGRFYEPELQPVHIDEEEELYRIERVVKTRGKGRGREYFVKWRGWPAKYN
SWVSAEQMHKIARVVHPPLSHTMYHDRATAILRNVTQ
>Polinton-2_HM_atp#DNA/Maverick 29611-30864 [Hydra magnipapillata]
MEEKEEKIETNPVENEPPKNEKKDSRTLTEILNEKGFHSFYLKGKNEEPEIKDDVSPTQIKFNIFKPSKDVYPENTIITG
PTNSGKSTMARELLKYGKYPDAEMLFVIQMREPSESQHKTWRDIINSNKNNLEAYDIITVDSAENLDPVIQRAISFSKDK
YGIQNSDHRLLKTILLFDDISAFCLKSQQYTSACSSGSHHGVGTITVFHAVPSKSSQAWNNLVSHYKCIVSFDNNSEIEK
IFKNDFPSAGKMHHVISDLLNKETSSQHGHLALFKRNCSVARLRTQITNSKEQKVFIPVDAQGKLDFDYNEMSVNKKIVT
FQSFPYVKAQNCKNYYYLKSHHNPFCQEKEKENQQTNDEEDKNNINSEKENQIKKRKWSESERAALMLEEIKRRKRYGLC
ESSDEFSDSGDESNESE
>MuDR-9_SBi_p2#DNA/MuLE-MuDR 3896-5825 via genewise and genscan with MuDR-3_SBi_p2, 4 introns (4147:4232, 4428:4519, 4893:4966, 5096:5180) [Sorghum bicolor]
MAARAPHPRFSLIEADYDKDHRAKALSEQQRPLCVLRGRTHHVHSWNERYAPYIRRAGFLEIVRVYNSGLPTLDPAVLTA
FVDRWRPETHTFHTPCGEMTITLQDVKMILCLSLSGHPVTGVVDESTWLDLVQEFCGRRPSDAEVKGTKKTSGVSTSWIT
QNFGAGPPPDAPDHEVEMYAKVWLWHFLGGFLFPDSSGDSISWIFLRILMQPLDNIAGYSWGTAVLAWTYRQLCQACRRQ
SSNGNLGGCSYLLQVWIWERFPVGRPTKPPGLPVWVHEDVGPTALFLWTDAKVVRGEADRRYRQYTDELDVLTHNYVTWS
PWSRWELEGYLSPRCEEEDSDWLYDGPLIFFHVVEMHYPCRVYRQFGRLQGIPPLYSTNAELHRYDGTLFVSINWLVANA
IYFCRIDRRFRSTQKDWAVRHDAHLQTWYHRQVPLVNSLPPHDPARWMEYLQWLHRSTRTHIMVPYTNTPADEGGEDDIA
DAFDEAQRVDKQVLRAPLNRYVVSTLDFHVLFDVYGTTVVQMIELMLCVML
>MuDR-5_OS#DNA/MuLE-MuDR 1620-4559 via tfasty with 50926620_Osa, 2 stopcodons [Oryza sativa]
MIGVDIANLVKSSNQNRIIKKISLLEFFFLPLQSALYLTSNRFEYDNTFWGFDPHNGYQQNDLQNAQTDTSQMCNSLPQS
VAVHPPVASLDMLYDEMQKSSADVDNQAEMCRSTVQLKASSVEVIYNEMQTQTIEADACFDQHFEQATEEDLLSDHAIVT
FQQVEEIEQDKSAENPDQNFSEEDINIFLENESVAAVQRGGQEANSAHVPSINKVFADENEAFDFYNGYAYMVGFSTCKA
SNYHSRKTDVVTRHTFKCNRWRKPSDPKEKDLPEVDEVENCLQTNTTNPLVKKRKQNKVVYTNCKAEMVITLKRGFWYIT
RLNLEHNHPLSPPEERKFLRSHKHMTDQEKLLIRTLNKINVPTRMIMSVLSYVRGGLSAVPYTKKAVSNYRDFVRRESGK
NDMMQCLDFFEKKRSEDPLFYFRFRTDENNVVKSLFWSDGNSRKFYEMFGDIVSFDTTYKTNRYDLPFAPFVGITSHGDN
CLFGYAFLQDETSETFQWLFNTFLDCMGGKVPATIITDQDLAMKAAIAIVFPDTVHRNCLFHMLSNARDKTGRTFNSEDE
EVYKDFHDIVTKSQTEAEFEYLWKDFIRRNNLYNVRYFQLMWVTRKRWAPVYFKSNWCPLIQTTARSEGTNSRYKADICS
SHSVSAFLAQYERIAETIYECFKEQESLTRNTVPDTWSEYQFEKQAAKLYTRKIFWAFQRILQSYTKYDVTVKVRDSIFE
VYKSEIHALQDFRKRKYIVVVDTIAEEYECICSRFKKDGILCVHVLKVLIHLNITKLPEKYFIERWRLKDKNQELSVPNT
LMSAAVLESNPLLRFNILSQKMIKLASDASKTKEKFVYVMNESDKIEDGLKAMSDTAPNEATVHVQDAAATTCGVASVGA
QTGILMGPSGVGIDAESTKGAVAETETTDMVGIASTSVLLDPKCSNSKGRHKSEPRKKRLIDVIRSKGSVTCSGCGSHDH
NIRTCPKKKRSQMQQKxxRR
>MuDR-10_SBi#DNA/MuLE-MuDR 657-2770 via tfasty with MUTRIM1, 13 frameshifts. Iffy consensus. [Sorghum bicolor]
MEFSSTDEAWTFWVSYGGQKGFEVRKRYTNERKSDGKVTSCRFVCANEGHRAKDKRDHLTKCPRAETRTDCQVRMGLILD
REKGNYKVTDLILEHNHILQLPQTSHLMASQRKISELQGFEIETADDAGIGPKAAHELACIQVGGSLNLSYTLRDHKNYL
RAKRQREMAYGQAGSMLKYFQEKIAENPSFQYALQMDREEQIANIFWADAKMLTDYAYFGDVVSFDTTFGTNKESRPFGV
FVGFNHFRETVVFGAALMYDETFESFKWLFETFLKAHNGKQPKTIYTDQDAAMGKAVKEVFLEAWHGLCAFHIMQNAVKH
LAELTNEESDTPPKRKEEDKEEEEPSILSDFSACMYEYEDEATFQEAFNTMRTKANKQTWLDSIYKVREKWAECYMNDVF
TLGMRSTQLSESLTGLKRHFKSDFDIVRFLKHFERVVEDKRNNELQAEFESRKKLPRITMRTPMLVQASELYTPIIFEAF
QGEYERSMAACTTALEGNNEYLVAIGSFDGDFTLEKERKVTGDPADQTGTCSCGQFDRIGILCAHALKVLDLMNIKSLPK
QYVLKRWTREARSGTVQDNQGRNVVENPKLDAMLRYKDMSHKFLNLAHRAASYPECGLLVDNALDILSKQVEEEITGITI
AVNPINVPTNDLPPIDLLSAASLKKKEVETKTSKRKRTWLDKMRKVPKKGGNKKENGSKVCDKPKYG
>MuDR_ZM_mudrA#DNA/MuLE-MuDR from RepBase [Zea mays]
MDLTPSFNSLDSNGIPNSPDVDPALGETGGSEGLQKIDGESQLDWDSIIVSDVLDDEGRVQVPTENEIYFNLGLNKGDEA
ANNRFSGSGTNCHAQGSLDTDNEDHHADQPCQDYIPDEKRVVYNRMNPSMQPGCLFPNMKEFRIAMRQYAIKHEFELGIE
VTSTTRYVGYCKGGDCPWRIYAREEKKGLPTIVVAVLDDVHTCTSSGRRRTTTPTCGWVAFHAKPLLMKKPQMGAKELQQ
TLQTTHNVTIGYDTVWKGKEKALRELYGSWEESFQLLYSWKEAVIAVMPDSVIEIDVILEDGKYYFSRFFCAFGPCISGF
RDGCRPYLSVDSTALNGRWNGHLASATGVDGHNWMYPVCFGFFQAETVDNWIWFMKQLKKVVGDMTLLAICSDAQKGLMH
AVNEVFPYAERRECFRHLMGNYVKHHAGSEHMYPAARAYRRDVFEHHVSKVRNVHKIAEYLDQHHKFLWYRSGFNKDIKC
DYITNNMAEVYNNWVKDHKDLPVCDLAEKIREMTMELFHRRRRIGHKLHGIILPSVLAILKARTRGLGHLSIVKCDNYMA
EVRDSTNCMTKHVVNAELKQCSCEEWQHTGKPCQHGLALIIAQDSRDVGMENFVDDYYSTERFKIAYSRRVEPIGDRSFW
PSVDFASGVFAPIARRGLGRQRKNRIKSCLEGGSARNKSTNENEKTKKRLKRQYTCPNCGELGHRQSSYKCPLNGTKKRK
RKPRINTTKNWIPKELRTSSQNVPVQPDVAEEVTEQELEDPQPETEQLGLALFQPLGAQITEQEADEPAEQAPPASPP
>MuDR-13_VV_tp#DNA/MuLE-MuDR 2869-4900 via tfasty with MuDRAVI1_tp, 1 frameshift and 8 stopcodons [Vitis vinifera]
MQSRGFHQRCAESHVGPLESSRFESAILGSGHTFSTANEFRDAIYLMSVGGRFRYKFKRNCLKHMTVICVVEGCPWKVTA
RAVGRTKIVQVHTFRNEHNHSLEDVSISEPAVRCNRATTMIDDVIRSNPDYLPRQICKDFRRQYGMQLNYCQAWNLKEKA
KERIHGVPQCSYKLLPWLCTRLIETNPGTIAEYRCSDDGHFMQLFVALSVSIHGFQMGCRPIISIDSSHMSGPYKGALFS
ASSYDADDGMFPLAYGLFSSENYEDWLWFLEKLKMVIGERDVIIISDRHQGIIRSVSEVFGSENHAHCYRHIKENFSSFL
TKLNTKGRKGKENALQMLDSIAYARLDCDYEVAMDTLRTFNHDLAKWVEENNPQHWAISKFKKMRWDKMTSNLAESFNSW
LRHERHHNICVFFIEHMDKLGSLLVEHKNGLVKWNGCIGPKTEENIALNIGKGENYITYLHLGSSMKVSNGKAFLEVDLM
ERTCTCKAWQMSGIPCDHACAAIRRMGFDVSDYVDDWYKYNLQEKIYSGSMRTLVTHDMPMIDEDGTVRDALGHTYPFLN
PPTTKRPPGRPRKRRIESQFCKKKTVHCSRCNQPGHNRATCNNPLLxGFFFIKLHNVRSTLYxYEIVCxSSLLFPxLxAM
SNLLDLKCLVYIYCDCMLFFNIMGYVTxxxNCNSKIC
>MuDR-4_SBi#DNA/MuLE-MuDR 2246-4210 Perhaps missing an upstream exon  [Sorghum bicolor]
CDCRALLDIRLHRSRGVWYVNNFVDEHNHRLAMPDEVPFLWSHRKIKDFHRNEIMSMEAAGIRKHVIRDVLQCRYGGYDK
VGIVTKDIYNYCSKNKRSRIAEGDARTVLGLLLKRRNTDPDFYFDYKVDDDSRLMSLFWCDTQSRMDYQSFGDVVVFDST
YRMNRYKMPFVPFVGLNHHRNTTVFGCGIICDERADSYIWVLQAFLKAMCQKKPQSVITDGDYSMIKAIRQVLPGVSHRI
CSWHVEKNILKHLHSNCLDGFRTLLYYASSETFEARWNAFLSEYETATNREWLAMMYKNRKLWAAAFQRDKFFLGMRSNQ
RSESLNSSLHRHLDIYMSLLDLVEHYENCVSRLRETEVEFDCRSSQSKPVPLTKYKEIEVACSHIFTAANFFLLQHELLK
INDYHIHDRIIAMGSSRYFLVHNEKKKSVFEVDYWSDTSGHTIHCSCRKMERDGLPCAHIFHVLDHLKIYEIPKCCMLQR
HLKDAKGGLPSKRKSALHVWTTKRSRFSELTVLGAEAFDVASKNHEQFCGVKQYLGNLISKKHNTHHDARDEQRSVHFND
QTWHTTIGSVFDPIIAATKGAPRKNSNVPNNSNVDGLSKKRYKSFVEKRQYKCTLCKQQGHNRKTCEKQVSNLIVTYMVY
MHLLVVLCMRCLSV
>MuDR4_SM#DNA/MuLE-MuDR 170-1789 [Schmidtea mediterranea]
MNTLLRTNEIISNNSEQLSLEFRVGSMFSNIDEFLQLFSKSAILKRVPYIVHRRNKKHVTLSCKSLSCDFKVSAYKKIVL
DQCIVSVMHPFHTTDCSYSKLSTCIAIKSVISESTPSSAKASEIIELVRQKTGSQLKYITAYKALESYKSKAQIVLENSY
SFINSLISSINPLDTFTNLELENSGFKRFFMSWRATKHFYSLNRKCITIDGTFLAGVNKGTLLVAVAQDGKDQLVLLAYA
IVESENRSSWLYFLENLNRHFDINDSSTIIMSDRDVGLLSAVNSVAPRAIKCNCVRHIAMNLKSRFHNILLMEKYWYLVY
TYDEIAFERGMRELQVLNEEFYHELVNMGISSWANSKCPIAKYGKNTSNAAESMNSAIKKFIKQDITNLIISLNNYSMKI
FSQRRERTIGNSIFAKQLASVETNTTIGRLYTIAESNANVFLVEREFIVDFSSKKCSCNRSFEFGYPCSHLCAVIVYLRQ
DPKAFVEIYFTSSNYHGSYVDSIAPLSVISLQRDNTLPPEARRSRGRPRVSRIRSAREN
>MuDR2_TP#DNA/MuLE-MuDR 236-3274 [Thalassiosira]
HQCHLSPLPNNYINATRGAFEHSAYTTMENALDSRTSKIAMPMHNSQGRTTYGDKLENLNRLRKSVKEWSSPPILLTVAE
SMTSDQFIEIDVAETIVSRAEGGGYVPRENKRNDNNCYWLAKVCDTNDENYRKSEIIPGIKSACRGSGFKVNCHWVSNRN
FIEVKCNRHKHFDEEKSMSHNKNYGGNVNGKGQPKEAKKKSEKPVIGDEDNDEICPVHWRLYWDKKHKRWFLPKLQVGVK
VHRGHKHKNLSDIRLETKDLISATDVQLAHDSLNSHIRTAPTHRLLETRTGETLAWHQIYHLKRKQQMEKQQNQTTACDH
LIHYLTTNNDISCVFLFANPKTNLITIKKKKDKRNSALSIEEVGTQLLEDVTDSPSIYAKSMKERYQLIHTETGELLLAT
AWTTYNQRKKFDMFPEVVSGDDTEGTNSEKRPLYTLLGKDQNGNIFPIAWAFMPSKSLWAYDWFFSQAMPLLHPGNAIKR
VEIILTDADPQETSAIENHVGGNLMPSKAQCHLFSKALHRWCAWHRINRNFTQHPKYKSTLAKMKNSCILSRVEVDVLER
WLWYFIKNYESEEEVDLCRQLMDVYLNDDEQDTHIGQIDDDDRKLLLEFITKSFHSNQRKLFRVHFDHSMHIGNQTTSAN
EGYHSGLKSSDLGPNGNDPMHITAMKIVKMTDSKEGEKSQKAAYDSNSTYGKAKDRKRTVQQFSTVCNSNVSKEYASSVD
FFQFRANEYTFLVKYDYDKVDNDETGGGSKKGEWSVDDTKKLEALRGTFLGKGKGTTPEYKTILHESMKYIIPRFEHTRV
VELKKLPDGTWVIVCSCGLFKTMGYACRHMYKVLKRDPTSSDAKIRWHNGYCEDYGRNNELTKAYMELRSVNLPGVSVTD
NEVTLIKTSMQIGCGERDEGFFSRSLNKLCLRGRSTFWHENADRFHQVLQGVTHYIVKAAANTAPTQESDTAPMIAGLAA
TCFGPARMIHSTSVRAVPSQSVSATQNSSSSVPMDDTGVDSSGDSNARKWSQ
>MuDR-1_HV_tp#DNA/MuLE-MuDR 1048-3730 via tfasty with MuDR4_OS_tp, 1 frameshift and 2 stopcodons [Hordeum vulgare]
MVVVPFKQMRWELTEWLARCLGFNTETHTVGVHALWTRSTGNIFWYLKHIERDDQWVRLxQSCERRGCHPVALLLPVLKP
VTEPEVERSYEYGESSVGMHDSQSIHASHAGDDVYKAGQSSQAEGGDADDYLSGEADADEIDGHMQNEMHEEDIAGDISD
ESAESDGEENAHEVPIPASWNQDFSSAMLVNDGHDSAWQYHQYNIATGALYPNKQALKDAILNWAMSTQRVFVAQVSCPD
RLTMVCRNQGCPARVHGYLPKYDTSWVISDLVSHNCVIPCIPQDHPNLTSTVIARWLYSEIVECKAMEVKAIQKKVFVRL
KYNISYGKAWRAKQKALETRFGSYFDAYDSIVRLVQTMQNRNPGTYVDIQELYLPEFPTVRVLHRLFFSFGACIEAFRHC
RPVICVDGTFLTRKYKGRILTAIGQDGQNQVVPLAFAFVESENIESSTWFFRQLKIAVVQDKQNVCILHDRHAGILSAIK
ILSNPAPGEQTPWQDIQSRWCMRHLGENFFSQFRNKNLMNLFKKLCKQNQQWKYELICNRLNVCTQRHVRDRRAARDAAV
RAHVKAVATQLATGICYREEESIGLCDLPGFDPPGTRRRLARTIKTFDQWIEHEPLESWSLLHDTHGATYGVMTTNLAET
YNFVLRENRALPLTAIVEGIFYGTVKYFRERRQIAVEHMTNNPNTRYCERVMKYMDEKMKKARSHSVVTIGNLxRKFEVR
LANNKFGCANEMRTHEVKIGNELWPTCECTCNKPKLLHLPCSHVIAACGLIGLDAISFVSPYFLKEAVLNTWTGELMGFR
SMGNFNTVEPAQRRYIPHPAHMRTSRGRRQSQRIRNDMDESEAGGRTVQCILCNEFGHRDPDCPTFVIARGTRRGRCSRG
RRGGRGRARGGGRV
>MuDR-1_PGr#DNA/MuLE-MuDR 1385-4569 via genewise with MuDR-5_Mad, 1 intron (1750:1826) [Puccinia graminis]
MNEEESDDNHAETAEDDETVTIEKCLELLASQADKNTGDNAEEDEPESDPEDKTNTTTKTPTIPPTPAQAPHTDIPAPPA
ATYSDPLILEHSIKTFARENGFVIVRKRTVPGKSITFKCDRGGNPARNRRKNDTRPGPIVSRLIDCPFDARAQIQKKAGG
EWKFTVADPRHNHAPSEDPSGHTANRKLSKELYEQMKKLGDAGLKPAQVLQSLKKTHPDQSILATISTVYSARKKARAEE
LRGLSPIVHLNQTLTTDFTSATKVNDSGEILGLFFCHNHSLQLLRHFHYVLFLDCTYKTNKYRMPLLHIAGVTGSNKSFS
VAFAFLHEETEEYYEWALESLLNVFTSNDIPIPEVVLTDREQALMNGLDSVFPTATHLLCTWHINKNLISNGAKMIKDKK
KEAEMIQHWKNLIKITTTGDFRAAFDRFAGSYGEKFGNYMRSNWLPVAEKYANAWTREVPHFDHRTTSRIESSHSFVKSH
LLGPNQSLNSTIKMITNAIETQVHNISSLHRQEKMDALMNLGSLFDNCLGRITHFALRKAQNNLRISANLGKNDHCNGFH
RLRTGIPCKHRLAELARSGGQLEPEDFHQQWHIHVCLLIMVNFSALRVLNNIVLPFNQQQDIQPTNNPGQNNPQALDQIE
SVKQRLLQTNPSTLTIQLDAISRLLDGSATVVDLQLPKQVQSTRGRPKGALNKPKSTTRDPSEFEHIEKKRKLEEKAAEK
NKKRKTKEDNQKKKEQEKKKKDDSKKKKEEEAPKKRIQPVRKGATKPVVVVPKKNVKATAPESSPPSSPVQANKKKLKVN
SSADASVPSSPITPTEPAPLVLLDPPPRPSNPHLPIPPSDLDYLQYLPKIIQPDVRDILDVRSDGHCGFRAVAYALGRGQ
GDYMAVRYELYNEIVRRPDWYRNVFHKLHGALDRIKVDSPSPCSKPHWMSMPSTGEVMTNAFERPVCFFSDTFCQTFLPS
FCPPNDNPPIFIAFLHEFSHFVPLQLHNPRLFPAPQLMKXWKEKASEEAWGWEAQFSDSFELTVERKIENPMKHY
>MuDR-1_Mad#DNA/MuLE-MuDR 673-2524 via tfasty with MuDR3_ZM, 1 frameshift. [Malus x domestica]
MMEEQSSQGPHLKQVAGERNPIVGQEFGSITEAYDFYNQYAREVGFSVRMGSSKKKKGTNEITWKQFVCSKEGEPDETYQ
KTKKNTSTKEERNVGSTRVGCKAKLSISRDKSKKKWSICNFEECHNHVLSTPTKAHLLHSHRKVSKAKKLYMETLSSANV
PTSQQFRIMENEAGGIANVGCIDKDLRNVERDLQKEIKGHDADMLLEYFHSEKEKNPSFYFEVDKDEENRLSRCFWVDST
ARKAYFFFGDVVAFDATYNTNKYSMIFAPFVGVNHHNQTIVFGCGFLSDEKTESFIWLFEQWLKAMPSGPPQLIITDQDQ
AISKAIAQVFPLAFHRYCIWHIMDKFPQKLGPMLSVYMPQFSASVYGSETIEEYEESWKHALMQHSALENHERLLPMYKL
RKQWVPAFCMHIFSAGMSSSQRVESGHSFFKKYVSKRNSLWDFVTRFERALGHQRHKELVSDHVDVNEVPKLKTLFPIEK
QMRGLYTKTIFLKFQDEVIQSTAYLKCDAIREDEKECVYVVIRADAESSTLRHIVHDKVSSFAKCSCRKFEFEGIPCRHI
VFFLRSIHIVDLPSQYIMKRWTKSVKAERVWDGDGLEIKDVQYKSLMMRHIQLSQLS
>MUMET2_tp#DNA/MuLE-MuDR 941-3584 via tfasty with MuDRB_PT, 1 frameshift and 3 stopcodons.  [Medicago truncatula]
MGLFDVVFHHGGEFVMDKRIFYRGGVQTVVSGIESNNWGVCDIQNIVASWGYEKNKFRVWSQIEVVFEEFFQINQDHIAE
EISGYSVANKVHAHIFVEHNVLDITVKVDVPSFLDLDAGYDKEDVMVCSDDDGAAVVGFNDSEDERTTALEDGFEEVEVE
APVNGTNRVTVNNKTLRIKKCGSKTPKKKSPKKNNSGRMNVVAPVSLLKNGEGKDVVDEEIDGDYLSEELGSSDPDDSDD
DTIKYQQFRMVQLNKDFKFKVGMEFNTLVEFKEAIIEWNVLNGYQIKMPKNESYRVRVECRDQCGYKVLCSKVGDRRTFQ
IKTFEGPHTCAPVLENKSSNSRWVAKKVVPKMQVTKKMSVQEVYNEMAVNYGVGITMDRAWRARNIAKKIIEGDADKQYA
MIWRYAAELKRVCRDNNVKINVVGPSATIQPRFGSFYFCFDGCKKGFTSSCRPFVGVDGCHLKTRYGGQLLIAVGRDPND
QYFPLAFGVVETECKESWKWFMQLLMEDIGQVRDVFISDQQKVCLDLFMFHLYMYLMFxIxxNLYLFIVSNLYSDLNLFT
VMQGLLSVFDEMFDSIDHRLCLRHLYANFKKKFGGGSQIRDLMMGAAKATYYQAWLEKMNELKKIDLGAWEWLMAVEPKK
WCKHAFTFYSKCDVLMNNISESFNATILSARDKPIISMAEWIRHYLMRRMTTSATKLQKWQHNVMPMPRKRLDKEITLAA
HWTATWSGIGEQFQVIHLYNRQQFIVDIAKRSCSCNFWEIVGIPCRHVVAALGHRKQRPELYVDDYYSRSKYVMCYSFAI
SPINGMDMWPEVEAPELLPPEYKNGPGRPRKLRIREFDENGARMKRQGVAYRCTKCDQFGHNQRRCKSAVQNPEAAKRKV
Y
>MuDR-1_DEl#DNA/MuLE-NOF 2726-5913 via tfasty with MuDR-1_DF, 1 frameshift. [Drosophila elegans]
MPAKSTVLLPALVDVLCSLNIFTETGALKPRNHDVWMEASKRLQGMISAKTLNFYARVNRNDVVTMVKQRCGITQPDNTA
NSTTLNWTAAEDDPEFQIIEPKKTEPLPILYFNLHLDEEVWRPIAPKVDQKMELRSKTYLHPNWTDTIAKYLYKKVPLPC
AFSFKKAKISDKEDSIWLRIEGHCSECNSTFKGHCLVEPEQNCGILISVSVPDTRGIPHDKKRRCTGSRRLEIGKELILK
KAAVWRKEATKDMSDDDAEPNYIPKLPTLRKLREEAINRHLGITKDWDPISSLYLKKYEGELAGCIMDIGLDEFFCIYCT
GAQIKTYISRIKNIKKICVDATGSVVLPIAKPNGDTSYVFLYQIVMHGDDSIFPVFQMLSAKHDTASIQFWLSRFISKSG
RFPPEVVCDFSLALLNGISLSFNDCRLNEYLATCFRCLSNEENMQLPRSYIRLDIAHLIKMMCRKNVFKGKLPNVKDFYI
RCIGVATTCETKESFARMMKSMLIVALSEASGENIEGEYLPSEKNEKYLLTRIATFTAPEYDYQENEWLPEEQEEMDGDI
AHFINKIQKSAEKKASKCKSVSCRPNPYFLPELVQQLLKLGRYFILWTNVMKDKFSSKYDVGSSALVEAYFKDLKNSDMS
IFNRPVRADKFVVQHIRCIESVCKLERAAMKRKCYTVPVFIKKIKENALQNEKESLGDISNEDDVEYLLKEENWKVKNNT
TKLPEYNIKEDDFGNVNNKSKNNGLHDGANQKSRGKYLKECPNVDLLYNRPHRRKRDEILHNGGAMGPVWIGTRSIQFKN
TCPFDSLVEILSTAYMDNFVYKRQMDSIYTDNLTVDFIKKYASEGISSGLYCDRGLILISFFEEKNRVVKCDANIGSFIS
QVLSGIPSASIRRSHELSEVSKCDNLENVINRLELVDAEQVSRLGLHGALVAFIKEFFYRYNENCTRCGEKLILEIDPGP
HIIIDLEFAMESTFHKIFKTDATGSATLLELPLEISVKNQRYILSGAIEYIPSTGTSIGHYIAHCRRITGFWELHNDMSR
QWRKSTASDTKMAIHIVIYTRTE
>MuDR-1_CI_p3#DNA/MuLE-NOF 4566-5189 Fragment? [Ciona intestinalis]
MFADSAVAQCMQQGGSLRRLWANETLENKKFIFIPWNPSIMHWVLLVVDIKNKQLLYLDPQSRPLSNMLEYMEKAKSFLN
NVLETKFGFTITSVDTMSTSRTLQKDSMSCGAIICMYASWLADGKPLLQPDVGPREFREHILSTIAHESPLDIDMCGSCR
KQDDNITDWVQCTKCPQWFHVNCVGLSIKEANLNKSFVCPPKQQAPL
>Rehavkus-1_TC#DNA/MuLE-NOF 2062-5292 [Tribolium castaneum]
MPKNFDFKELADFIKSLAPNTSLTYIANLPLSDRIIHESSIYMFRLSKPSKRRLNDCKNRIKKILSRNEGNIKQFFHKKI
VESKIISNSPVFFDNHYTTEKNDFSINSPESTNQFSSFDNYNDFHITDFSVNDVPNSIKNLYNQPNKSKFTLLPENSQND
ISIKRLKPMSFKNCNIKEGTFSLSYEQFNDIKFNNSLINYQITVRKKFATVNNICPLNFKKHQSDKKGKKFTIYAYCAHE
NCKVFIIKLSPEKHDIIGTVFSNTLNYRHDNQKRTTFVRNFERQLLGNKLQTSTPFMTRVRDTNFVPSDQIRAGNYDNIK
SKHVYKKIKSQTLSKLDRDTDEFFDLIKMSRENRQYIYRVFEPLTVYLFSIEQLEVIKHALSQTNNGFIVLHLDATGSVV
HSPPETKKRVYYYAGVVHIKDKELVCPVFEMITSEHDGYSIGSWLQAFESFIVKSKQLKWSIFSYVVTDFSFAFINAITT
QWNKMDDISVYLNIVYDYITSETTVRPKITLKLCCAHFMKLITNDINKICGSNKTQKKFFKHSIAAVFMKTSLPEVEKWF
KKMVLITSKEFLDLDGKLSNVISKMFDTLNNSKDLEDIDEETETETEDTEIPHTLYQKSKFYRHFFKICEQDKKMINSAI
DSDNINIFYNPLILDLILKKYLPILPLWSNIYPNLRDRDSIGRFSNAPVENWFCQVKNNILKPTGLRLRSTRFIRVVREV
VLSKSKECALNIDKNQCAIIKKKRIQTKNIDLGLESEENWNKKIKSEKKKSYFEKPINEIHPSRSKFNSKVKEIKNVDFY
NNNLIRDDRYYTLGNSGVNYVVGYYSNAHPMKELYLEDFETLGNFKNFRKMWLSNFLMDISLHVLYTKNQHKDTVRIITT
HETLSIFENTCPKLTHTLEGIWLLPLLINQNHWCFVIIDFNKKTFSFINPLKISNLNQTETYLKKFLLGIRAPRRFSFTH
WRCNIFKHPVQKNAYDCGVYVLLFAEKFIKEENPDLYSCYEPEEFRIILRNLLLEMSDDMENRCLICGQLNLNVTTDWVE
CDSCKRWIMLNCLPPRLAPSNISENFTCFACQNYQNL
>55247335_Aga#DNA/P gi|55247335|gb|EAA01987.2| ENSANGP00000000194 C term expended with gi31229976 [Anopheles gambiae str. PEST]
LPSPSTLQKYARTFKLREGILEDVLVFMGNFVSSLSSRDAECILSFDEMKIKNVMEYDPSADEVIGPYNYIQVVMARALF
KNWKQPIYIGFDKKMTKEILMNIIIKLDEKKINVAGIVSDNCSSNISCWRDLGAHDYTKPYFEHPITKKNIYVSPDAPHL
LKLLRNWFIDHGFVFNGTIVTAQPLRDLVEGRLGAEITPLFKLNTGHLELSSQERQNVRRAAELLSRTTAVSLRRYMPKE
KELADIIEMVDLWFSVSNSFHPNAKLHYKRSYTASEDQLKALDDMFNFIANMIVVGKKNMQVFQKSILMQINSLKMLFVD
MKAKHDINYLSTHKLNQDLLENFFSQLRQKGGTYDHPSPLNCIYRIRLMILGKSPSVLKSVTDENNKKNIEPDVFVTSTD
FENETGSLNEICVSQEHYVSATKFHEAEIVPSLPDFDATDADDEFSATNFDSLFTFNEQEKDGLEYIRGYIGRTFRDKYP
YLGQYTCNLTEDHCYSQPQSYVEHISAGGLYKPSASFLDQGLKMEEIFQRTHKDGKLIQ
>Rehavkus-2_NVi#DNA/MuLE-NOF 4761-8564  [Nasonia vitripennis]
MVGQKPAVPAKEIIEALINFDIYQSKKKLKRKKDPIWQEICDILNNNRERKIKPLNLYMHVDQDRHNIQSSYRKIKDLDI
YESDDCETIIEETNEDEISESENTKEDTVCYRPTKRKNKNIIFNFTITPEQWSQIKPITITYKDGREGMSLQEPYREMFG
KEMYYKEKLPCAYNYKRNVIDDIESYVKVTGYCNTCNAQLMINCFDKPIDGEPVTFTVETLDSRGIPHTAKRRLAGSQRK
LIKKELEHKKPKKWRREEASKHMKYGDPEPPFLYSQEVIQKASHEVKYEKLGLKPGEKLFDSLTNLKKDVEFNRYFRGIG
NDKFYLMYWSPEQVSIHNDVQAKLRNPLSLDATGSVALKIKRPDGESADIFLTVLSTYIKSMIVPVAQVLSEKNDTNFLS
YWLLEWRKSGAKIPEFIVTDMGKGIQNSVCLSFNTMNFSKYNDECLKILLNAQYKIELNTQLRTDVAHLVHAVTKWPCFS
SDKPKVKELFKRCVGFMTGIDNLKNFSEFLVAVFIVSNSKNNDDNCQKALKYLIERIQTYKFNANVTEKLELLDQKETLD
IFADIEEFNTKSNQRLTRKYVDELKVKPIKNKSDNKSDNSSDFNIQNNDYYLPNFAERLSILCAEFPCWTKVMNVYFDNS
EDVATSARAESYFSDYKSSNDASQRGDVVFVNHCRQIDSDMLLARASLNNLQPDEIVSKKVIVKDDNEFLFATERWKRKY
TTAECQEFSDFLSETVELAENSISETINGKNDLILDKNKLEQEQKSHIKNSMKVNDESQVTFDDDLEGFSDYIKLTSSIV
GDEKLISSIHSPEKINSILQPINSNKTMHLNFNTDHNYSLEPEKESPKQIFQNTDEVLLIDHQQSESERVLLDYKKTEEV
VLDYEQSDEEVDLKHSKETLLNKEKYSSYEVKDVDVKSSVNTVQNSVQLVVKNEQDQNSLPKNKKNRGKYVSAEPGLNLV
LQKEKKKNKGRKVIQNGNKLQEKSVRGKKFRFNNTCSFDSITEIMTHSCYEVQAFEQFIKNNINSILEMQNLCYASTIIN
YATSSLTNTLYTNRAYLLHSLMPNLNNYDVNCQGNISNLFCSLMKDLTSIRETSLCQTCGYKTECNKCQIPIPNTDIIVK
HNYTTMQKELDQYFTDKNVFCSNCKTSNAHLSRTVGSYLCIDTEDSYQRSLNPKMTDFNQLDITSTLDQVPVTINVKKDT
FNLCGVARYIPSVVEKGMGHYVAYCRKINGTWDERNDLLTYKTAITRSQTKRLEMKISILFYVKFNND
>Vandal18_tp#DNA/MuLE-MuDR 432-3668 Genewised with Vandal2_tp, 2 introns, 4 stopcodons [Arabidopsis]
MDEGVMVLVGGWECKDNGEWRFKMSDNKYGKWVDVSExDMLTEIVSKVATTFGLDRKTKFQLSFWFEGGDTVYTHQKMSP
VSVDNESSLKKFKEKRQEKGGLNMYLSIDDVDVAEISSPEIRGHKDNNVVEVEVAGYMGGRMDDGNSTHAIPLTYEEDGF
LEEIILGQSRMRAELPDTQATTLEESLDKDCPRCLDNVHGQSLQGVGIVDVEVTTIPDADAQARALAEDMSRRLTDGETI
FTELAGDEMLMCRDAVPFKDNAAGVASDKANMNLRKGGDAIYIGWVFNNKVELHKTLTMYSMKRLFNFRIKASDKTRVIA
VCDDKKCDWRVYATFHENSEKVEIRTATLKHTCDVEARSKYGMKATRSMLGELLKTKYTHGKKGPRACELPEIVLAELPY
MKAWYAKEIAMKKARGSEEEGYKFFXTCLHLLRTTNLGTLSTVHTDYTEEGNIRFKYLFFXVWASIVGYQYLRKVIVIDG
AQTKGKYKSCLVAASGQDENYQIFPLAFGIIDNENIAGWQWFFEXLSQFIPDEEDLVFVSDRHAAIYVGLRTVHSLAKHA
CCTVHLFRNVVHNFQCEGLVKMVSMAARSYTVGDLRYWFEEIQKRNIQCAKYLVEIKLSHRTLAYFPGMRYIVMRSNISE
SLNAAIQKAIDFPVVTMVEFIRTMLMRWFCERRQTAAKTKTRCTPKIEDLLIDHLKLATDCAVIAADEWIYQVNDSFGMI
FTVDLEKKTCTCRVFDVLMVPCCHALAAVGVRNVDIYSLIGDYAFVTEWRKLXREHILPPPKEKDTEVPNDISLVVVYPP
NTRRPVGRPRTVQIPSRGE
>SHAMUDRA_MT#DNA/MuLE-MuDR 922-3641 Via genewise with OSMUD1, 1 stopcodon and 2 introns (2479:2562, 3234-3322).  [Medicago truncatula]
LKIRFHHKGYFISDPVIAYKKGEVYEFGGELDIDETNLKDLDNLVREIGVEGEYKLFYVSPGWELSDGLRPLKTDRDVIR
FINDHINHGVADFYVEADKDFEGLDSRYVSDEEVVVLDKGKEPAELEEEEESDPEYVGDGDDEGDEHESEAEIGSVDGVS
IDDSDFDEEWDWTSVLPKQTLNPTPVAQSSNSCQAIVGVEASRNTEATTEEDFEDENGDSDFLESCESSEDDGIQRKKKK
YNRFKFPENDETVIFEEGQIFATALLIKTAVKEYALQNKKNVHLKKSEKKRIIVKCSDGCPYHMRFSRVPPQTYYVLSSY
NSAHKCNNTGRVRLLRTKLLAKKLVPILRHTPDMTIKALQDLCKHKWYVIFSRFQMYRAKLKALEMIHGASDEQYAHLRN
YAEELLRSNPGSTVKIKCKETAAGFVFQRIYVCFDACKRAFVQNCRPLIGLDGCFLKGRYGGQLLSAIGKDGNNQMIPIA
FAVVEAETKESWDWFIELLLSDLNGIQCKRWSFISDQQKGLVNTIASIGDNVEHRLCVRHLYGNFRKRHPGEHLKEALWD
AARATTMPDFNKAMDKLKRFSEAAWEEMRQYPPGMWCRAGYSTHTCCDLQVNNMCEAFNSAIIELRExPIISLVEGLKFY
ITNRIVRLRDYMLRYEGDICPMIKKILXKAKKDANGWSPIWRGDREYAQFTVSDGSDTYVVNLKEKTCACRKWDLSGIPC
PHAIAGIYYNSQNPDDYVAHWYRKQTFLDTYDNFIMPSNGPKLWPEVNLPPILPPPVRRAPGRPKKLRRKDNDEPKPTTS
KKGKRNQETVRCRRCKELGHNMRTCKGKTAADRTITPGGNKVITQFLLL
>OSMU6_p2#DNA/MuLE-MuDR 4504-5013 May be nothing. [Oryza sativa]
MGISNHFLHIFVQQILPYPQRATLWLHNTSQINGINQENETKKKGISTKENEKQWGLPLSRTESTAALDSSGCWICSLQR
LCRKHISTMVPTTLRPVCAESCNRSSPSNESGCLSPPLPPKPAAAADAAATATDAAKARCHRQRRLQIPPPPEKPSVRFT
VHCECTWSN
>Vandal4_tp#DNA/MuLE-MuDR 495-3276 via tfasty with Vandal5_1708-4235, 3 frameshifts and 1 stopcodon [Arabidopsis]
MDDYIMVICGEWFCSSTGEWKLEICNQLFSRVVPIHEGIILVALNEAILQEFGVKGLNPLLSYSVPNKNMFATKDKTPPV
LVTSEIGLQYYLNTLRENRGLNLFVKFEEKVDTPNLSCETPGSSAKRKVESLYDTTSGSRNADTGSGDISSGVSKSPNVP
VTPVDDEFMDALHDAEEKIARSGGLKSNEEVIVNDEDDIFVDDLFVDNKTEETEDGIDISDDTMPCGGYDKEFWGNFLSD
DYGGSNAEELMSKGGVDARYKGKNNKDESFEDLNDKVGTSEDKVVQCTGSGVFDHAVFVSGGGSGVNAEKVKTEWAAKTK
VGCKAGSSHGLRGGARKLEEIDDEEFDIPPLFEDIEYEVENIPDLGIEDDGKGIYKGKVYASKEDCQIGLAIYAIKNMFH
FKQTRTKWNYFVLSCSDEKCDYRILATLMKGTGYYEIKKASLDHTCSLDTRGQFMQKATSKVIASVFKAKYSDPTSGPVP
MDLQQLVLEDLRVSASYSKCWRARESALTSVAGSDEESYCYLAEYLHLLKLTNPRTITHIETERDVEDESKERFLYMFLA
FGASIAGFKHLRRILVVDGTHLKGKYKGVLLTVSGQDANFQVYPLGFADVDSExDDESWTWFFTKLERIIADSKTLTILS
DRHSSILVVVKRVFPQANHGASIIHLCRNVQAKYKNKALTQLVKNAGYAFTGTKFKELYGQIESTNKNCGKYLHDIGMAN
WTRHYFRGQRFNLMTSNIAETLNKALNKGRSSHIVELIRFIRSMLTRWFNARRKKSLEHKGPVPPEVDKQITKTMLTTNG
SKVGRITNWSYEINDMLGGRNVIDLEKKQCTCKRYDKLKILCNHALVAANSFKISYKALVDDCFKPHAWVSSYREAVFPE
AIGRDEEIPEELEHRSMLPPYTRRPSGRPKVARIPSTGEYKVRIFFC
>Vandal14_p3#DNA/MuLE-MuDR 11643-8601 (reverse) 4 introns; from repbase  [Arabidopsis]
LPRRLFRSGSEPNGERVQSYSELSLIDDIANALDAEDMKILRESQFGKLFDFSESAAYSGKLIHFLLTRQLVVRKKQEIW
VIFSGSPVRFSISEFQNVTGLNCDKPPRMKERKGKRKLAPGKYWYSLFDRSDVSVEWVVGRLKKRVVQDQGIRLRYAVLA
LIDGVLCPTSGRSKISPVHADMAENLDMFLNFPWGTMSFLMTLKSVTARGADKLMRKSITVQGFPHALQLLLLQSVPRIR
ELQFPEAVEDSDSEMEETDTEIERLWSLKLDLVWKVDRQSQIKVVSIWSGTPTGDAFKSGWVEDEEDLSVDYMLQLIKEE
HIFKGSMFSGGVVPDSLPDERNDNSDVCSTYDCVDEDTIQPDASLPGSSKPRKTKGQVHIPDSIKNYIDMKDKRMESRML
KAIADSEARLSSLLRESHGRKNKRHSGPKSRDVGEGLGGKKGSSLVVLDNGRVAQSKENSGSGFIDQVLGEVMHDINDAE
PTQTTTPIGRLSPPTRPGLRSSLKRKRGNNGPTAATILTPAVDNSSAEKSVSADKHVSPEAVNINKVGGVVTDTTEDESA
RDGIHDIGSSTLPAKELDDMFAEKSVSGDKTVSHQDNILVDAPGDGIGGEGLDDIQTSPDKPIPAAASHTQCLLPPPTDV
NEFFESEPSLPDPYVVLVDMDGVAYNVGQPELQYTIPCIIESDLTAQCKSTPGPMVDDGASDKDGEGLADPPATADNANL
SQMPMISEPSLPAPTNDIVDPDGKVA
>Vandal9_pt#DNA/MuLE-MuDR #ReverseORF 18 exons from repbase; protease [Arabidopsis]
MAPIPLPPRLIALGEEPRGERVNVYQKMKTLYGIFNALDDDERQYLSRSPFARLLEFPNNHAWSASFGIFILGRQLEVTK
PNEIWVLFAGTPIRFSLREFKIVTGLPSGRYPSLKMKKKKGTAGKTIPFNSKLFGLEEDVTVDRVITMLKRRVVSDPGMR
IRCACFAIVDGFLVPISHYPKIIKSHAEMVEDVDAFLAYPWGGLLYALQLVVLQAAPAIQDSPVIDNPIDSDSEGAEDDV
EVATRESVPFKLRNAKELDEKCSIRVASIICPDYVLDPAEDLSWSDDEEDERVENLLMLVNKGLIFKNDMFDGGCFPSQI
QLASKKQKRGAKSNATRNRKGAKTSKNHGGVRSKPRRHTPEEVGSSEAVSMDAISRMLDAKLEAHSKTIISAVTDWLTKN
TIIEGDHLKDPDSGVNHPKETAPAGNVGASNTGDLGSNATNDEFGFNSLRTNSRSHCPERTSNVEASVDEILSFYNYNVS
SGAGYKEAEGTNNVSDDVDSPLHSDHEDNSDGDNNVATGSIPPPQAVSRDNTECGNNTPNDEDFPSEPSMVHDSEGDNNL
SIGASPSPKVVSEVNAQVSNGDAVEDDLSPGRDVNVEADVNERHDISPVTGAVTSPKLSGDNVEVQCSQLTTTNVDTLTN
EVERPENTPANLAVSSPNHSVDNEECSQQAAHDVDLLGNECEESQGVPVVGVDSVSNEMSAELPDIVVPIPDVSADLPVT
TVPAFCRGAPSAVSSPRQDFTTPPPSKEAMPPLQVNVDPEERFQNSMKKLKAISSISICGGIALSNKDILDLIDRKKNLT
SKVMDALIRFSRHLLRTDDVDGEKLRLKVLDLKFVSLLYRQFTKFSRCNSKTEFQFPLPLIDILSGVGESDSVQLFTEAD
YIYLPFNFDKKHWVALAVDLKCRKIIVLDSNIQSRKDSAIHDVLMPLAVMLAYLFKQATFNPLMSQFLLDPFTIEPFCHS
TGNFAS
>46132715_Reu#DNA/MuLE-MuDR gi|46132715|ref|ZP_00171343.2| COG3328: Transposase and inactivated derivatives [Ralstonia eutropha JMP134]
MPRKTKTSQAADRELPTIPEDLIAHFVKGPMTAEAVQDASMAFKKALIERALGAELGHHLGYPAGAERPAGTANQRNGKS
AKTVLTDDGPLRVDIPRDRDGSFDPILIPKHERRFTGFDDKIIAMYARGMTVREIQAFLAEQYGTEVSPEFISSVTDAVM
DEVITWQSRPLEVMYPVVFFDALRVKMREDGVVRNKAVYLALGVLPDGTRDILGLWIETTEGAKFWMKVFNDLKTRGTQD
ILIAVTDGLRGMEQALNAVFPNTTLQTCIVHLIRNSLEYASWKERRAVAAALKPVYTAPTVEAALAELSAFEQGEWGQRY
APIGASWRRAWDQVIPFFAFPPAIRKIVYTTNAIESINAQLRKIIKTRGHFPSDEAATKLLWLALRNITGKWGSSTHDWK
AAMNQFAILYEERFTHPHR
>34908366_Osa#DNA/MuLE-MuDR gi|34908366|ref|NP_915530.1| P0529E05.9 [Oryza sativa]
MKKRVFRPGLLHANNQIQGIQQLDAKYSTTRPRQDGGGGDSNGTSDEHGENLTRIPDRASSSNQRRTRRVGRLTPRPGST
RSYEKKRKWSNSSRISKIRLVILDRDQCPREARRMAEAPVHPSSSKNHEKEDVGDTNISSTDDACVQKLEPVIGMEFDDE
DIAYEFYNRYAGDVGFSIRKFWHDKSSTNVIRTKKFVCSREGFNKRNTSDACQRKRADTRVGCMAEMTIKITPTGKYAIA
SFSNTHNHELITPSKAHLLRSQRRMTEAQKAQIDILNDSGVRSKEGHEVMSRQAGGRQSLTFTRKDYKNYLRSKRMKSIQ
EGDTGAILQYLQDKQMENPSFFYAIQVDEDEMMTNIFWADARSVLDFDYFGDVICFDTTYRTNNYGRPFALFVGVNHHKQ
TVVFGAALLYDETTSTFEWLFETFKRAMSGKEPRTILTDQCAAIINAIGTVFPNSTHRLCVWHMYQNAAVHLSHIFQGSK
TFKNDFGKCVFDFEEVDEFISAWNKMIEEYNLNDNQWLHHLFEIKEKWALVYGRQTFCADMKSTQRTSKAYTPAIFEIFR
EEYDMVMGCCLYNNDHTLSTSEYKVIDSAKHGEHGFLVKFDPNEIKVSCSCKKFEFVGILCRHALKVLDHNNIKELPSEY
ILKRWTKYAKIGSSQANRKCANDEDARVVLARRYGSLCRSYNNILSKAAENEEAYALLERTSLELMEQVDQIMQANKSEG
KSKVDRNAGGTSTTSEVIPNFTVSNENDQMPSEVSVHLNMVISKLYFFTLQPN
>48844562_Gme#DNA/MuLE-MuDR gi|48844562|ref|ZP_00298867.1| COG3328: Transposase and inactivated derivatives [Geobacter metallireducens GS-15]
MVRSTVEETLNRMLDAEADRLCTAEKYQRNDARTDTRAGHYQRKLQTKAGEVTLNMPKLRRQTFETAIIERYRRREASVE
EALIEMYLAGVSVRRVEDITETLWGTKVSPGTISNLNKKVYAKIEEWRNRPIKGEFPYVYLDGIVLKRSWGGEVTNVSVL
VAIGVNDQGYRKILGVCEGAKEDKAGWSSFLRHLASRACGCSSPTPAWGWWSPWPSSIRKPNGSAARFISTAMSSALCRP
NGWRK
>49613995_Dha#DNA/MuLE-MuDR gi|49613995|emb|CAG70355.1| putative transposase [Desulfitobacterium hafniense]
MAYPNSTVPFEKMLMKFVTEEDPMQAMLKWLCERLMEAEVDAKLGAEKSERSTERQGYRSGYRVRRFDTRMGTLYLMVPK
LRNGGYIPFFVEGKKRSELALMNVIQEAYVNGVSTRKIEKLTKSLGIDSMSRSQVSSIAKELNEQVEAFRNRSLDKVYPV
LWVDALYEKIRDDRRVKNMAVLIVTGIDLEGKRDILAVEPMPEESTATYTSLFEKLKSRGLEKVWLVVSDAHKGLVKAVQ
ESFIGCSWQRCKVHFMRNILAHISGRDKQAFANKLKQIWLQPDYSSAKKYANSLMDEFEAKYPEAIKTLEEGLEDSLQFF
SFAEIDSRKIASTNLLERLNREVRRRTRVVGIFPSMDSYIRLVTSYLIEYSEDWCSGRSYINPKIITSIEQERSKAA
>48859976_Cth#DNA/MuLE-MuDR gi|48859976|ref|ZP_00313904.1| COG3328: Transposase and inactivated derivatives [Clostridium thermocellum ATCC 27405]
MARKRIITPEKKELIRNLISEYNITSAKDLQEALKDLLGDTIQNMLEAELDEHLGYEKYESTEEAKSNYRNGYTSKTLKS
SVGQVEIDIPRDRNAEFEPKIVPRYKRDISEIENKIIAMYARGMSTREINEQIQEIYGFEVSAEMVSKITDKILPQIEEW
QKRPLGEVYPIVFIDAIHFSVKNDGIVGKKAVYIVLAIDIEGQKDVIGIYVGENESSKFWLSVLNDLKNRGVKDILILCA
DALSGIKDAINAAFPNTEYQRCIVHQIRNTLKYVSDKDRKEFARDLKRIYTAPNEKAGYDQMLEVSEKWEKKYPAAMKSW
KSNWDVICPFFKYSKELRKIMYTTNTIESLNSSYRRINKSRTVFPGDQSLLKSIYLATVKITSKWTMRYKNWGLILGQLQ
IMFEGRI
>32473311_Rba#DNA/MuLE-MuDR gi|32473311|ref|NP_866305.1| hypothetical 48K protein-putative transposase [Rhodopirellula baltica SH 1]
MLKVERWSPEGQNLPFATFQFSSAATDGETIMIEANLLESLGQVSASETGQVFRDFLRGHVREMICEVMAAEVTQLCGPK
HDPSPSEHYRAGSSSGRVLYEGEREDVVRPRVRQKSGDGSSREVELATYRVTKDPQQLQEQIVQAIVSGVSARGVEEIKP
NSPGVKKSNVSRLWQEAGSKFVEQLRDKNLRSVMWCALMLDGVRLSKDQTAVVALGIDSEGRKHVLDFALGSSESLEVSR
ELMSRIVRRGFTCEHRLFVVLDGSDALRGAVVEFFADAVIQRCLVHKERNIKGKLSKRHWGEMSRLFTRLRSVQGIEAAE
EVFGDLRAFLEPINAEAYRSLHEAGDDLLALHRLNVPSTLHRSLLSTNAIENSFLNTRRKLGRVTRFRAETDQATRWLSY
ALLEAEKGFRRISGHSFLPTLIAALARPSANPE
>7267539_Ath#DNA/MuLE-MuDR gi|7267539|emb|CAB78021.1| putative transposon protein  [Arabidopsis thaliana]
MTFQTLNNNVCEEFELDAENWKPQLSYWLSGQLSVFSVNTRPPVVVGSDMAVRNFLRVRESEPQLNLLLSLESLPYLVDD
GEKADEERGQCSKEITYFQSALGILNGTNGAECLNMMSSFRPPASTVIAAATDANETVGVNIATAANCTAGDDSNDCVVP
QLRESSTEPWLSTNANGIINLADAATPSLSNNLADNCEDSVSNAYVESETEAEDMRMLREVEEIERAEKSKRQCKGKRKL
FQSDEDADEDSYTDGFNESSADGDDGLWEYEGWSHLMTNGCAPASSEEDAIYIGRMFKDKEHMRTTLSIYAIKRLFHFKQ
TRFDPGRLIFVFVDRRCRWRVYAVSAGHESKNFEGKYANGMPGRRGVDIPDIVLAELKVSVTYMKAWYAKEAAIIRCRGS
DEDSYKLLAVYMHSLQQANPGTRYKLEYTEAVAGSKQFKYLLFAIGACVAGMKYMRRVVLIDGTAIKHKFKGVLLTASMQ
DANFMVFPIAFGIVDSESEPAWSWFLRQLTTILPDAADVVIVSDRHRSIYAAMGQVYLEAFHGACAVHIERNVRLKFPKK
GVSNLVRKAARAFNETNYGGLYKEIERRSPGVKVTNS
>4210728_Mav#DNA/MuLE-MuDR gi|4210728|emb|CAA11709.1| transposase [Mycobacterium avium subsp. paratuberculosis]
MALDQSALLEVLDALRNADAADRIKQAAETIYQALIDAELTAVIGAGPHERSASRXNQRNGSRPRTLSTIAGDLELRIPK
LRSGSFFPALLERRRRVDQCLFAVVMEAYLHGTSTRKVDDLVKALGADAGISKSEVSRICADLDTEVGAFRDRPLSEQHF
PYVFLDATYCKARVNHRVVSQAVVIATGVAADGRREVLGFDVGDSEDGAFWTAFLRSLKTRGLSGVQLVISDAHTGLRSA
IEAILIGASWQRCRVHFLRNVLAQVPKGSAEMVAAAIRTIFAQPDAEHVREQLDTIAGMLGRQLPKVETMLREAADDITA
FADFPVLHWKKIWSTNPLERLNKEIKRRTDVVGVFPNPAALLRLAGSVLVEAHDEWQVAEKRYLSETTLALLHPR
>9711271_Sma#DNA/MuLE-MuDR gi|9711271|dbj|BAB07803.1| transposase [Sphingopyxis macrogoltabida]
MTEDRLLIEELAAKGGQPDFLRTIAENVLQLIMEADVDGLIGAGRHERSSERATWRNGYRDRSLDTRVGTLNLKIPKLRA
GSYFPGFLEPRKMVEKALVAVIQEAWIGGVSTRRVDELVQAMGMTGISKSTVSKLCKDIDERVHAFLKRPLTGEWPYLWL
DATYLKVREGGRIISVAAIIAMAVNTEGRREIVGLHIGPSEAEVFWSDFLKDLVRRGLTGVKLVISDAHEGLKGAITRVM
GATWQRCRVHFMRNALSYVPKGQNTVVAAAIRQVFLQPDQKSATQVWRQVADQLRTRWPKLGACMDEAETDVLAYTGFPT
QHRTKLHSTNPLERLNKEVKRRADVVGIFPNEDSIIRLVGAVLMEQNDEWQLQHRYMQIEGMAELNQPMIEEENQPLHIT
AKAA
>23013207_Mma#DNA/MuLE-MuDR gi|23013207|ref|ZP_00053133.1| COG3328: Transposase and inactivated derivatives [Magnetospirillum magnetotacticum MS-1]
METPTNIVRLRQPEDLDDPLTEVLRAGARRLLAQAVEMEADAFLSAMQDLRLPDGRARLVRHGHGPERAIQTGIGPVPVA
RVRVRDRGASGSEDRVRFTSTLLPKWARRTRSLDALLPVLYLRGVSTGDFQEALAALLGRDAPNLSPAVIARLTAAWADE
YARWQGRDLSARRYVYVWADGVYLQARMEDQAECMLVLIGATPEGRKELVGFQVGVRESAQSWRELLVDVKRRGLSIAPE
IAVGDGALGFWQALDEVFPGTAHQRCWVHKAANVLDKVPKSVQGAMKVDLREIHGAPTRAAAEAALAVFVEKYGAKYPRA
ATCLTKDREALLAFYDFPAEHWDHLRSSNPIESVFATVRHRTVRTKGALSATTAKLMVFKLVMAASKTWRRLKGENQLPK
VVAGVIFRDGTEVTASPDHRAA
>15923405_Sau#DNA/MuLE-MuDR gi|15923405|ref|NP_370939.1| transposase [Staphylococcus aureus subsp. aureus Mu50]
MNDFTTEILKTLANKGDLNELFRVHLEKAVNTLLKTELTAFLDYEKYDRIGFNTGNSRNGSYDRTVKTEYGELHLQIPRD
RNGEFKQQTVPAYRRTNDTLEETVIHLFRKGITMSEIADLIEKMYGHYYTPQTMSNITKSFTEEVTAFNGRELHDRYAAI
YMDATYIPLKRKTVAKEAIHIAVGIRPDGSKEVLSYAIAPTESITIWEEILLDLQERGLKNVLLFITDGLKGMVGAISRF
YPKARFQHCCVHVSRNISHKVRVDDRKEVCDDFKMVYQASSKEVALEARGTFAEKWKTSYPKVVESILSNDHLLTFYDFP
LAIRKSIYSTNLIESFNKQIKKYSHRKEQFQNEESMERFLVSSFDTYNQKFLGRSHKGFQQAEGELEQMLSQLIEN
>115764896_Spu#DNA/MuLE-MuDR gi|115764896|ref|XP_001198405.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus]
SFLPSQFKHEVCSYETLGGESNFECMLRMKVNNQDEVQTWLEAFKSRTDSVTWRLARTYPDAGRFNSYRVDLRCQHNTRH
TSKPGKRTKDTKCPATMSLVLKRSIKYSRSKNPHITAGLLFTVTLRFEHNHPLSCANAVRRKDVSEATVAKLKTLFENGH
SPSSALDTMKHDLQEVHGDQYVFVSTDRSICPDLHFCYRFYYKLFEQSYGATSGEQMYVDLESRIHQYNEEQHQTCAKIE
QTSDNQTVIAICTPVMKRVHGKVKHSGEMVFVDSSGNCDRHNSRIFVMLTHSSAGGLPLGIVVTTSESQSTITAGFDLLK
SILPEDAFHGRGVNGPQVAMTDDCKSLRQGLHAVYPECSLILCVFHLLQAMWRWLWDAHSGIRKQDRPYLLRLFKSLVYA
ESLGDLNARQDHLANDEIVRKYPKFRAHVDTVYQRREAWALCLHKELPTRGNVTNNFVESAMRIIKEKVFQRLKAYNVTQ
AVHFLCTRMEDYYIRRLIDVANNRMANPSQSKYNARDGDVNLDNIVKEGDTSFTVPSASSGRLYHVDIFLGTCTCPIGIT
GGPCKHQSAVTKKFHVESTNFLPTFSPNLRKMYYIIATGRDDIPDDWFASLHNADDQVPSNEHQGDDMMGPSTSSIQDPQ
IRAIESLGLQRSFDNSFSQRGRRIETSVGDEDLSQKLHNFVDTLTTKLREDGDSFRGPLTKFVRRVENITTDSTLISALV
TFGKYSGYAVSKKAKRGNRSGLQTSTQIGVQPTA
>ISRso7_Rso#DNA/MuLE-MuDR ISRso7 gi|17544971|ref|NP_518373.1| ISRSO7-TRANSPOSASE PROTEIN [Ralstonia solanacearum GMI1000]
MPRKLKAKPVDLPAIPAELLEQFGNGPMTAEAINAATLALKKALIERALSGEMNHHLGYPPGAAKPATVTNQRNGSGAKT
VLTEDGPIRIEVPRDRDGSFEPLLIPKHERRFKGFDDKIVAMYARGMTVREIQGFLLEQYATEVSPEFISSVTDEVMAEV
TAWQARPLDPMYPVVFFDALRVKIREDAVVRNKAVYLALGVLPDGTRDILGLWIENTEGAKFWMKVFNDLKTRGVNDILI
AVTDGLKGMPEALAAVFPATTLQTCIVHLIRNSLDYASWKDRRELAAAIRPIYTAASAEAAQAELDAFADGPWGQRYPTV
CAAWRNAWDRVIPFFAFPPAVRKVIYTTNAIENINAQLRKIIKTRGHFPTDDAATKLIWLALRNITAGWSRAAHDWKQAM
NQFAILYAERFVRPSV
>ISRm3_Sme#DNA/MuLE-MuDR ISRm3 gi|15963917|ref|NP_384270.1| TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT ISRM3 [Sinorhizobium meliloti 1021]
MAIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELDDHLDVERLEGGPANRRNGSSKKTVLTGTSKMTLTIP
RDRAGTFDPKLIARYQRRFPDFDDKIISMYARGMTVREIQGHLEELYGIDVSPDLISAVTDTVLEAVGEWQNRPLELCYP
LVFFDAIRVKIRDEGFVRNKAVYVALAVLADGSKEILGLWIEQTEGAKFWLRVMNELKNRGCQDILIAVVDGLKGFPEAI
TAVFPQTIVQTCIVHLIRHSLEFVSYKDRRTVVPALRAIYRARDAEAGLKALEAFEEGYWGQKYPAIAQSWRRNWEHVVP
FFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGER
>ISsod4_Son#DNA/MuLE-MuDR ISsod4 gi|24375104|ref|NP_719147.1| ISSod4, transposase [Shewanella oneidensis MR-1]
MTQPFNFEQALKDLQSGKSLTGKDSILGPLIKQLTEAALQAELEQHLAHDPQPNRKNGKTPKTIKHPSGNFELDAPRDRN
GTFEPQLIKKNQTTLTDEIERKVLSMFSIGMSYRDINQHVEDMYGLNVSNATVSAITDKLIPELKAWQQRPLDSHYPIVW
LDAIHYKVKEDGRYVSKAVYTLLALNMKGKKEILGLHLSENEGANYWLSVLXDLNNRGVKDILIACVDGLTGFPEAIASI
FPHTETQLCVIHQIRNSMKYVASKNQKAFMADLKPVYRAVSKEAAEMALDELEAKWGDAYPLVINSWRRKWHNLSHYFKY
PEHIRKVIYTTNAVEAVHRQFRKLTKTKGAFPNENSLLKLLYAGILNASDKWTMPIHNWSLCLSQLAIYFEGRLDSVLEI
>MDR1_p2#DNA/MuLE-MuDR 4177-5070 [Oryza sativa]
MQVLQPLRVRAHAPPVFDDRYIPYLRAAGLLGVALVVSRGMPVFNAPALTALVDRWRPETHSFHLPSGEMTITLQDVAMI
LALPLRGHAVTGRTETPGWRAQVEQLFGIPLNIEQGQGGKKKQNGIPLSWLSQNFSHLDDDAEPWRVECYARAYILHLLG
GVLFPDAGGDIASAIWIPLVANLGDLGRFSWGSAVLAWTYRQLCEACCRQAPSSNMSGCVLLIQLWMWLRLPVGRPKWRQ
SFTPWPYNEPDMEKTVAYLFESTATAHAHRDVAYKHYVNEMDCLQPQHVSTSNITSS
>Jittery#DNA/MuLE-MuDR 741-2483 (perhaps extends C-terminally) [Zea mays]
MISHLFFSWQSSSSFVPDCEHSLKPVIGMSFDSLDELEGFYKTYAHECGFSVRIGAQGKKNDVVEHKRFVCSREGFTRRC
AEAKNQKKHFETRCGCNARVYVRLGQDKRYYIASFVEEHNHGLVSPDKIPFLRSNRTICQRAKTTLFTCHKASIGTSQAY
RLLQVSDGFDNIGCMKRDLQNYYRGLREKIKNADAQLFVAQMERKKEANSAFFYDFAVDEHGKLVYICWADATCRKSYTH
FGDLVSVDATYSTNQYNMRFAPFTGVNHHMQRVFFGAAFLANEKIESYEWLFRTFLVAMGGKAPRLIITDEDASIKSAIR
TTLPDTIHRLCMWHIMEKVSEKVGHPTSHDKEFWDALNTCVWGSETPEEFEMRWNALMDAYGLESNEWLANRYKIRESWI
PAFFMDTPLAGVLRTTSRSESANSFFNRFIHRKLCFVEFWLRFDTALERQRHEELKADHISIHSTPVLRTPWVVEKQASI
LYTHKVFKIFQEEVIAARDHCSVLGTTQQDAVKFVVVSDGSMRDRVVQWCTSNIFGRCSCKLFEKIGIPCCHIILAMRGE
KLYELPSSYILKRWETRCKR
>ISRM3_Bth#DNA/MuLE-MuDR ISRM3 gi|29345690|ref|NP_809193.1| transposase for insertion sequence element ISRM3 [Bacteroides thetaiotaomicron VPI-5482]
MDRNSEEYQQMRDKALSQLRSGESLTGKDGAFGPLLKEFLEAALDGEMSSHLDDSERLKGNKRNGRGSKRVKTMAGEIDI
VTPQDRHSSFSPEILKKRETILADNMSSKIISLYGMGLSLRDISSHIEEMYDVEISHNTLSEIIERIVPKVKEWQSRPLE
SMYTIVWLDAMHYKVKDGGRTESRAVYNVLAVNKDGHKELIGMYVSESEGANFWLSVLTDLKARGMKDVLIACIDNLTGF
AEAISTIFPEVIIQNCVIHQIRNSLKYIASKDQKEFMADLKTVYQAPNKDLAELNLDKLQDKWGKKYPVVLESWRRNWDN
LSAYFAYDEHIRRLIYTTNAVEGFHRQVRKVTKTKGVFPNDMALMKLIYLAVMNISKKWTQPLQNWALTAGQLRIKFGER
MPLAI
>AT10MU1#DNA/MuLE-MuDR 803-2124, 2249-2879, 2957-3073, 3155-3274 (Genscan)  [Arabidopsis thaliana]
MVLSAGYTENMSKFSYFPSGEVGQNRKDLCGDSDVAEMITCTHELESKNLYVVRADDPYLDDVLIGEREEEEELESEQLD
FYRDDYVESDDSDDDGARIDFYVGQEFVSKEKCKDTIEKYAIREKVNIHFKRSERNKIEGVCVQDCCKWRIYASITSRSD
KMVVQSYKGIHSCYPIGVVDLYSAPKIAADFINEFRTNSNLSAGQIMQRLYLNGLRVTKTKCQSARQIMKHIISDEYVEQ
FTRMYDYVEELRKTNPGSTIILGTKDRIFEKFYTCFEAQKTGWKTACRRVIHLGGTFLKGRMKGQLLTAVGRDPNDAMYI
IAWAIVPVENKVYWQWFMELLGEDLRLELGNGLALSSDQQKGLIYAIKNVLPYAEHRMCARHIFANLQKRYKQMGPLHKV
FWKCARAYNETVFWKQLEKMKTIKFEAYDEVKRSVGSNWSRAFFSDITKSAAVENNISESYNAVLKDAREKPVVALLEDI
RRHIMASNLVKLKEMQNVTGLITPKAIAIMEKRKKSLKWCYPFSNGRGIYEVDHGKNKYVVHVRDKTSCTCREYDVSGIP
CCHIMSAMWAEYKETKLPETAILDWYSVEKWKLCYNSLLFPVNGMELWETHSDVVVMPPPDRIMPGRPKKNDRIKDPSEE
ASSENSQKALVTCSNCGQTGHNKRTCQIELVPKPPNPSLEFPSYHAKVIVTCSNCQQTGHNKRKCKLDPVPKPPNLPPGR
PSKKQKTTQ
>Arnold2_pt2#DNA/MuLE-MuDR  13175-14952 R (1 intron, 1 stopcodon; derived with genewise and Vandal14_pep3) Arnold1,3 close [Arabidopsis]
MDSESEILTLPEQIYREGEESIALGTVQQYSNWNLVSKVEEALGECLFQKIRSSFLGPLVELGPKMKAKKGIRFSGKIFH
YLMQQRVKTKGSTLWFRVDSQPIRFSLREFYLTTGIQCEPVHRELRRKGKDPVKEPYFWASKGSYTLGDLEDXLFLKPKE
GEPAVEDEEKLCLAAVVLTEGILLTPYGKEKIPLPRLQHASDFEMYTAQPWGKEAFSVLSNSILRMDEKTWAKEKYDLRG
FGLALTIWVLSAVPAFGAAYGVKDKEFQSEYPLILKWKSTTTPEFFKIVNLVNDVSEVSFCLFTEFFKWFLDLKFCFLKI
CNVIVSS
>ATMU4_tp#DNA/MuLE-MuDR 357-3052 2 introns [Arabidopsis]
MPLVRLNGIISTIGSPMEDDELESSVPVVAPPAEVISESGGGDGGVEAAAVDNRRVSGRRRTGSRVRVVEDDEPEIDPEL
EIDPEPDLEDDCAVYGDDDCDVVDDAVAGEGNEDNVVEEDANLNIADDFPEAYRADEEAGSDSDTGDDIWDDEKIPDPLS
SDDEDEVVRVGEEAVCGDEDDPEVLLAIEKTFNSPDDFKRAVLMYSLKTRYNINFYRSESLMVAAKCCYVNELGVNCPWR
VLCSYEKKKHKMQIRIYFNEHICVRSGYTKMLKRSTIAALFEERLRVNPKMTKYEMVAEIKREYKLEVTPDQCAKAKTKV
LKARNASHDTHFSRIWDYQAEVLNRNPNSDFDIETTARTFIGSKQRFFRLYICFNSQKVSWKQHCRPVIGIDGAFLKWDI
KGHLLAAVGRDGDNRIVPLAWAVVEIENDDNWDWFLKKLSESLGLCEMVNLALISDKQSGLVKAIHNVLPQAEHRQCSKH
IMDNWKRDSHDMELQRLFWKISRSYTIEEFNTHMANLKSYNPQAYASLQLTSPMTWXRAFFRIGTCCNDNLNNLSESFNR
TIRQARRKPLLDMLEDIRRQCMVRTAKRFIIAERLKSRFTPRAHAEIEKMIAGSAGCERHLARNNLHEIYVNDVGYFVDM
DKKTCGCRKWEMVGIPCVHTPCVIIGRKEKVEDYVSDYYTKVRWRETYRDGIRPVQGMPLWPRMSRLPVLPPPWRRGNPG
RQSNYARKKGRYETASSSNKNKMSRANRIMTCSNCKQEGHNKSSCKNATVLLPPPRPRGRPSLNQVTLLLRFRFSTRASL
NYVRFRFSSRLH
>IS1553_Mtu#DNA/MuLE-MuDR IS1553 gi|15843250|ref|NP_338287.1| IS1553, transposase [Mycobacterium tuberculosis CDC1551]
MALPQSALSELLDAFRTGDGVDLIRDAVRLVLQELSELEATERIGAARYERSDTRVTDRNGARSRVLSTQAGDVELRIPK
LRKGSFFPAILEPRRRIDQALYAVVMEAYVHGISTRAVDDLVEAMGVETGISKSEVSRICAGLDEIVGAFRTRTLGHIEF
PYVYLDATYLNVLNGTGQVVSMAVIVASGIAADGSREILGLDVGDSEDETFWRGFLTSLKGRGLGGVRLVISDQHAGLVK
ALKRCFQGAGHQRCRVHFARNLLAHVPKDKADMVASMFRMIFSAPDAEAVHATWEGVRDRLAASFPKIGPLMDDARAEVL
AFTAFPKAHWQKIWSTNPLERINKEIKRRSRVVGIFPNPAAVIRLVGAVLADMHDEWQASERRYLSEASMALLYPDSDNA
VVAAISGGQ
>IS905#DNA/MuLE-MuDR 90-1265 gi|15673186|ref|NP_267360.1| transposase of IS905 Almost identical to IS1191 transposase in Streptococcus thermophilus. [Lactococcus lactis]
MTQFTTELLNFLAQKQDIDEFFRTSLETAMNDLLQAELSAFLGYEPYDKVGYNSGNSRNGSYSRQFETKYGTVQLSIPRD
RNGNFSPALLPAYGRRDDHLEEMVIKLYQTGVTTREISDIIERMYGHHYSPATISNISKATQENVATFHERSLEANYSVL
FLDGTYLPLRRGTVSKECIHIALGITPEGQKAVLGYEIAPNENNASWSTLLDKLQNQGIQQVSLVVTDGFKGLEQIISQA
YPLAKQQRCLIHISRNLASKVKRADRAVILEQFKTIYRAENLEMAVQALENFIAEWKPKYRKVMESLENTDNLLTFYQFP
YQIWHSIYSTNLIESLNKEIKRQTKKKVLFPNEEALERYLVTLFEDYNFKQSQRIHKGFGQCADTLESLFD
>Polinton-1_DAn_p2#DNA/Maverick 8194-8706  [Drosophila ananassae]
MNKFERSNSVIVDFQYVVGNNKQIFVKELAFMPGGTVIPNFFHFKPPYSLKELDSETLQQHNIHRKNIHGLDWMDGEIPY
NCLGDILSPLNKFANVIVRGEVKKEFLSKFLSNNIIDIYIGKSLTCYPNFFTNCKIHKKVKLRCALNNLFRLFIILENCN
YDIYFNGESYV
>hAT-2_DBp#DNA/hAT-Ac 352-2205 via tfasty with hAT-1_DEl, SW:1077, 2 frameshifts and 2 stopcodons. [Drosophila bipectinata]
EVKHGVEQDVEIVGNVQGAKSLKKVNRLGSSVWDIFEKTKDGKTAKCRICKKVYKTSGNTSNLADHLRRFHPTQHQHKLA
QATVKKFFNNNEYDSKSVRKANLDTALMQMIAKDIQPFSIVDDEGFRNFVKVLDPRYTLPSRTTLQNVHMQNIYAEMKVK
LQTILVKVDQCAVTMDCWTSKANTGYLTITVHFIDEKFQLRSAVLSTQPLLCATNHSAENIASSVRAELISWNLLPKVCA
IVTDNASSMIKACELLEKRHLPCYAHCINLVVQDSLSLNSIQTILTKCKRIVTFFKCSTIAYEKFKKAQGVDKPYSLIQE
VRTRWNSAFKMVERILLTKEHISPVLLSLSKAPEPLAADDVAVLEDLKDALAPFNEVTTQLSSSTKVTVSSVIPISNGLV
QSLREIRENLKTKEGEELCALLIEKCKKRLFPFEERSSTRLATXLDPRFKKEGFRSPFNAEQAVSLLEKTLSSLPHTNKE
PILTTQPPEPPKPKSSLLNFVKQNIELKQRSSKVESIIQIRQYFEKMNIDENQDPLEYWKVSxxKLKVLFFKIFIIAANE
LEMPQLAISAKQGLCIPATSTESERMFSKAGLTICDRRASLKPKTVTILLFVNKNWFL
>hAT-1_GM_tp#DNA/hAT-Ac 866-3058 via tfasty with HAT3_MT_tp, 3 stopcodons. [Glycine max]
MSSPLEISEPIASTHTNDNEVNVQVPADSTQVEANNQENEHEEPVVGRKRKKTSVVWNDFDEMEISPGVKKAVCRYCKSK
FATGGTGSSTTHLKRHSKSCIQKKAKTTAESRQPAIPFQPSNSNNPFMIPGVRYSNEKMREIIATAIMVHEYPFSVVEDS
IWMWAFQYANPDFHKVTHKTARNDCLALFETEKKTLKKLLESVSKISLTTDMWKSSHQVVEYMVITGHFIDAGWNLQKRV
LSFVKVPAPRRGIDVADAIFKCLKTWGIENKVFSISVDNASYNDSCIRCLKENISLSSKLFLGGSLFHVRCCAHILNLLV
QDGLSTIKDIIFNIRESVKYINHNDARLKAFCDVVEQKRLKERKLVIDCPTRWNSTFNMLSTALKFKTAFASYEEREPHY
NYAPSLEEWNQVEKVCKLLEVFNLATHVISGTITNIFFCILLDHFVIPKSLxYNYYLNAGSEYPTANLYLAEVWKVKQIL
DKEIEDEDLFMREMVGPMKKKFDKYWGECNMLMAIASVLDPRCKFRMVSICFPLIYSKEVANENIKKVKSSFEELYDEYV
GLCLQESTSSVGNLGGNISSSSQLPNTSVVTGFDEIMSMLHEKEVVSPIKSELQDYLDEGIYVPNTGNSSFSALDWWRNN
SMKYKILSKMAADILAVPISTVASESTFSAGGRVIDEYRSRLNEESVEALICGGDWIRHKYNVKRKTKVNFTYNxLLxVI
FNHFLATFSFI
>hAT-2_SBi_tp#DNA/hAT-Ac 1007-3121 via tfasty with ZhAT8_ZM, 6 frameshifts. [Sorghum bicolor]
RGYGSELENDDDLREDAAALFGIDLGDQRPPIINLDGDGDDDGGVAASTDTRGTSTTGTGKRNSAVWEYFDEIKDGEWVR
TGAICKHCRSRYTARSAGGTGHLRRHMRTCMKKQNHATMVQSKLALNPDGLKNWVYDPVVARIELCRLIARLDLPLGIGE
TQAWEDYIKRAHNPLFEKVSRQTTTRDMGKLFAEERALLINSVLPACSSVSLTSDIWSGNAKEDYISVVAHYVSADWELQ
KKVVGFRLIEVKHSGENIADRIASVVEEFGLMDKIFAVSLDNASANTRAFEILQPVFFGYLGSYPAPTSEDPHKVKYLLV
HQRCACHIINLIVKTGLKRINPYLEDFRTAINFLNSSNQRIALFKNYCNAQGLRPRKFGLDMDVRWNSTYLMLKHLLPYK
EVFSVWINSNYGRLVDSAHWHVAEQMMKFLELFYDATVVLSGVYYPTAPLVLHHLLDIAEHLQEAENDANFRNIASPMKL
KFLKYWEKIPLIYSYAFILDPRAKMKGFFNVLDLLAKATGVSYSLYYGDVKDEMSRLFGKYEEKFGGATRSQRVAMPSAR
AGKRKQAWGRIYGGPGASPGCSPSSSSTPSAASELQAYLDSDPVTGWEESFDILLWWRDHKLTYPILSIMARDIMSVPVS
TVSSESCFSCTSRILEDRRRRLLPEHVEMLTCIKDWELGATREQHTPEDFDLEEAFKNLYLDEEG
>hAT-17_Crp_tp#DNA/hAT-Ac  877-3430 via tfasty with hAT-4_AMi_tp, 1 frameshift.  hAT-11_AMi_tp, hAT-12_Crp_tp, hAT-6_AMi all very similar to identical.[Crocodylidae]
MKHTMKRAGKAAGKPSGRGGRGGRGRAVSSPPPPKLRRSLFPTTSRHEASTSTGSKERGAVPVPLPVPESASPPRAPAIT
PPHHHHDNKSTSTSMTVSSTPISLPMLSLPVPEEELELDLDLSAIAREILGKEGESSEFVLHTPQVSPRARSPSPEGTSE
EAEVEVAEASGSAESAPPVAVPLPAEEGEXAASAHAPAPQKRAGSVVWDHFELADDPTYAICLHCRAKTSRGKGTKHMST
TGMLMHLRRHHPLALAPPQPGTSGSVPKGKSPSRSKAPVPPKQRQATLEQWGKGGQKGGRVARASEITQSIGEMLAVDGQ
PFSLVERPGFRRLMALVAPXYQVPARTTFSRTVVPSLYEACREYLREELRKAGPQVALHFTSDIWSSRGGDHAYLSLTGH
WCDQSGRRWALLQAEVMDESHTATEIMGAMNRLVQGWLVGQGELTRGFMVTDNGANMVKAVRDANFVGIRCVAHKFHLIV
RDALEGDRAAGDGASTTSKLISKCRKVAGYFHRSIKGGKMLRDKQAELNIPQHKIMQDVETRWNSTYLMLERLVEQQKAI
HEMALLGEIGISGPLNRAEWDTISQILVVLKPFLEATETLSAGDALLSQVIPVVRELQSQMESFQGINVPGWGKPLSPDV
QALVRRLKEGIRKRLDPLRSSTVHVLAATCDPRVKGSVCGSQSLNQWTEVLVKRVREAERRRRGDVEEGDPLSRASTPST
SQSPPPPQALPMWAKGMASMVGSRGTRPHHQAGSAQALVAAYLAEDVEPLLCDPLAYWASRSQMWPDLATVAREHLSCPP
TSVPSERVFSIAGDVVTPHRTSLDPGLVEQLVFLKVNLPLLGFPKLQVQTE
>HAT-12_XT_tp#DNA/hAT-Ac 1877-3909 via tfasty with HAT5_CI_tp, 3 frameshifts and 3 stopcodons.  [Xenopus (silurana) tropicalis]
MEKISKISPVWKYFTVKEGDSTKCKMxYALxNYLEVARRQNNTTSPLLKHLRVRHSAEYKKILCFAPGTTTPGTTSTIIT
STMTSSTSAEVSSTVTPSPPENSEKSTCVNCGRIGNLKQATINEFTKARHQWASDNPHAVKIHNAIGKMMAVDLQPYSIV
EDAGFTELVNLLEPKYKIPSRRFFFxQIIPDMYDKVIKQVRNAVDRANALAFTCDTWTSEYTIQSYISLTAHWIDVEFSR
RSAVLQCKAFNTRHTGKQIADSVLETMRTWDIPTKKCHIIVRDNAANMVKAMSEARLPSIGCFAHTLQLCIHDSLFSQRS
VNDMIAVCRKTVGHFKHSSSAKARFTELQSELGLPNHNLIQDVVTRWNSSYLMLQRMMEQKRAVNLYISETDNMQHIHAQ
QWALMETVIGILQPFEELTREISAANACISIILPAVAMLKRYISTDVADDGIKHMKNLMLSSIQSRFQGLEENSLLVVAT
ALDPRYKVKLWTAETQRCRAKLLVQEAVATVLNADPALTIEDDSDHYNSDDSGSGGSTLPKSHDDKNSKQGKSPGRETGP
SPSKKKCKGIWNNWEELFGKKIINLCPSNTVEKEINAFYLDQNIDRSEDPVQWWKRNRIIFPNLAKTAEIYLCSPPTSVQ
SEQLFSTAGDVCSHSRSRLSPQNAERLIFLKANVKFMT
>hAT-1_DK#DNA/hAT-Ac 649-2475 [Drosophila kikkawai]
QSYSTNCSTGNLSRHLKNEHNIRDIDSPSTSLATRGSISNFFKKSTPIISPKDSKWALGRELALWMARDLLPFHIICHSG
LKDFLKKYRVVATDADIPHYKTLSTTALDDVYECILRAVTRIVSGQKHFALTFDLWTDNYRRRSYITFTFHFLSANFEMK
HLTLETKYLSKSHTASNILTEVEEVTQMYNLQMGSNYVVTDQGSNIKKAINLGCIKNHFCLGHGLHNLLNVDGYNSEPEI
KNLIVKCKNIVSALRFKTHVLRCQADELQKEVLSNIDNLEELLASEDNEWVDYDDDFGPLDDVPLQTYKNINNPNDLQSS
LVDKRNVSLKNSVPTRWHSVLTMLDSLGCQRAALNKLLTSSNKTHLILLENEAQLLYKLCDFLKKFKDAVTVLSGDLYPS
ISLALVIRTEIVSILEEPENNEPLALTLMKSHIKNRFDSRFPISDILVCASLLDPRFNSLDCVLEYCEKQSLKRNDFLLK
MFKELIGDVEQDSDQQQESHSASKILKLAQRHSTNTKDNNLEAECHLLLSLSSCQDVLTFWKEKAPAMPLLSMLAQKVLC
IPATSTPSERVFSIAGLTITQKRSQLSPHNVNKVIFIHDNYDTCKESLT
>38567845_Osa#DNA/hAT-Ac gi|38567845|emb|CAE05688.2| OSJNBb0002J11.15 [Oryza sativa]
MAGASLIATLFDYDHEATRKIIAKMIIVHEYPFRMVEHLWFNILMKYMNAAYQFIGGKTIRKECVDVYNTEKEVLRKALK
SVDHDKFIARGSSQFMPQYFHVRCYSHIVNLIVNDGLAPLGPLLVNLRETCKYFKKSPSRMHRFREVCKQIALPIGKGLC
FDVPTRWSSTYKMLCACEFYKDAFVQYAYVDAKYQWQPLLADWLVFSKIHPILKALAEVTTVFSGSTYPTANVFYPSIVN
VKRALLAASKSTNRDKVLKNMVEAILEKFDKYWKEKNNLMIIATTLDPRFKIRFPVVSRLAKRFLTVPASSVSSETTFSA
GGRVLDDYRSSLRPSMVQALICASSWIRGSQDNKTPPMAVAEDDKDDVASN
>5326722_Gmo#DNA/hAT-Ac gi|5326722|gb|AAD42027.1|AF072117_1 Ac-type transposase homolog [Glomus mosseae]
KLVLWQAHSTEFPVLSLMAKDYLAIQSTSVACEQAFSVAGNTITKVRNRLCPETARASLCTKSWVENNIGEQIRLK
>50730348_Gga#DNA/hAT-Ac gi|50730348|ref|XP_416859.1| PREDICTED: similar to Zinc finger BED domain containing protein 1 (dREF homolog) (Putative Ac-like transposable element)  KIAA0785 homologue [Gallus gallus]
MENKSLEGSPSDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNTSNLSYHLEKNHPDEFCEFVK
SNTEQMREAFATAFSKIKPESSQQVVQDSLIMKTYQNYENKKHQELTSAVISLICEGMYPASIVDEPTFKALLRTADPRY
ELPSRKYFCTKAIPEKYNTIREIVLKELTDVLWCGISTDMWRSENQNRSYVTVAVHFLSSSHSNCLVVNSRCLKTFEVPE
DNTAETITRVLYETFIEWGINTKVFGATTDYSKDIVKACSLLDIPVQMPCLGHTFNAGIQQAFQLPKLCSLLARCRKLVE
YFQQSTVAMYMLSEKQKQQNILHCMLVSDRVSWWGSTLAMLQRLKEQQFVIAAVLVEDSNNHHLMLEASEWNTIEGLVEL
LQPFKQVAEMMSASKYPTISMVKPLLHMLLNTTLNIKENDLKEISMAKEVIAKELSTTYQHTPEIDMFLNVATFLDPRYK
KLPFLSAFERQQVENRVVEEAKSLLEKVKENTFRTEEKFFTVSEEPPVKKIIISSTPPPTSVINNMLAEIFCQTGGVEDQ
EEWHAQIVEELSNFKSQKVLGLNEDPLKWWSDRLALFPVLPKVLQKYWCILATRVFPERLFGSSANVVSAKRNRLAPAHV
DEQIFLYENTRNGSEAEPEDEDEGEWGLEQEQIFNLNDSVNVNNNFFNIRDSGFV
>ATHAT8_tp#DNA/hAT-Ac 974-3051 via tfasty with ATHAT7_604-2856, 2 frameshifts and 1 stopcodon. [Arabidopsis thaliana]
TSGKSNKRKDNGGVGGSGSKSSKKGRSWVWDHFTKLPNDADHCNCNYCGKELACSTKSGTSTLKKHLNTCKAYxVWKAAN
VQNTQTVLTPDGPSGCMTISKVSESVWKEATNEMLVLAELPLAFVDCLAWRHFCSKVQMYKPHSRRKARREIVETYVSKK
AAMKKIIENNRQRLSLTTDIWVCPNTAASYMVITAHFVDAYWQLRKMIIGFKHVCDHKGQTICDTLLACLAEWGIKRVFC
ITVDNATANTSALTKFKKEMMRLNGNDALILKGEYLHMRCAAHILNLVVKEGLTEVNSSVEAIRNGIQYVRSSTQDVKTI
WNSTYLMLDQALKFRLAFEKMEAEDKPYNDYFAEKEDGNKRIGPAVTKDWENVDRLVQILEIFYKSTLVLSASNYVASHK
LYNEIVSITINLGALTYDDDGLKDKAEAMLAKLAKYRDAFGEKVEFNRLVIVASVFDPRKKMKFAELCFERLYGQGSTKA
TQLQDSVYNILSDLFDEYTRNNLLNKSSTGTTGSSTQSEWSQDQVVNEDSERPVLRNGFLYENMKYEFDEIVKETGLHNT
ANEVDRYLKEPVEKPIILKGTEYDLLNFWRINNGKYPVLSLIAKDILAMQVTFVASESAFSTSGRVVNPFRSCLSHYMVE
VLMCLEQWLKCEIHLNERGVSTIKQLLSEITLEDHLMRSKFRFSSLFLVITS
>50901008_Osa#DNA/hAT-Ac gi|50901008|ref|XP_462937.1| putative transposase [Oryza sativa]
MDHQRKPIFASGHAKRFAMKNTLFFEADLLSVRQRKITFSLVVGLLNMSTHNSESSTGNSSSHELSLQPRKRAKVWEHFE
QELVMVDGVPKAQCKYCRLMLTATRKSGTSHLINHVCDSCPLVEVEVRNRFIAIARKQPVENFVFYPRRSEELMIKFFIH
DEIPFRKIEDPYFAEWMESMQPTFKVVGRQTIRDKIYTCYIRMKQELHDELQNIDSRVCLTSDMWTSNQNLRYMVVTAHY
IDAEFSLKKKIISLKPVKYPHTSFAIEEAMMRCLTDWGLRGKLFTLTLDNASNNTAACEEMVKNQKNELLFEGRHFHVRC
CAHILNLLVQDGMRLIRGAIHKIHELLKYIENSASRIQAFNSIANSSCLCSKFGLTVDVPNRWNTTFKMVLEALVYRAVL
NSYANENGEVAPSDEEWLTAESICEFLKAFEEATRLVSADRKPTAHSFLHLVLCIRHALSDFDSQTTSILTQLASAMHMK
FAKYWDEKLPNNFNLALVISTVLDPRRKRDYLEFFYAKVSPNMNEAETKVDSVIEWMKSYFRVYEGIARRRGVSCLSHSG
QGEASGVGSPVLGKRKLDQEFAIFKSNRTRLHKSEIETYLEEVCEDDSKDFDVLAWWKRNAKRFPVLAIMTWDFLAIPLS
IVPSESAFSCGGRILGDTRSSLTPDMLEALVCAKDWLFKPKKQDQST
>HAT-17_ZM_tp#DNA/hAT-Ac 955-3081 [Zea mays]
MASASGSGCASTGASLVAANTLAVAVQETTPVNGAGEGEDGERTTDIGVKESDTKKRKPKRQTSGVWDYFIKSTVTEKGD
KGETEEQIWAKCKKCKFKTRGESSRGTTIFWNHLKSRHYIHRGQQELQVQKGEGNNAIVQNFKYDPEASLRKFHLAIVMH
EYPFKMVEHEYFVDFIKSLRPHFTFLCRTTTRNEIMTMYMDEKKKLFEQLKSLSCRFSATMDMWTSNQNKGYMSITIHWI
DDKWQMQKRIICLPHVKGHHNGELLASEFVKGVMSWNLEKRLFALTLDNAAANDKCVRLVVKELNKLARIQKYPPLVCGG
VFFHVRCLCHILNLVAQDGLSVIASPLKNIRAIIVIVKNSTLQWEEFEKCAQFFDLNNKSGLPLDVPTRWNSTYDMLSHA
MYYRSAFERLVYLHKDKYWHCTPSSDEWDMAESFCKCLKQLNDATVLFSXCQYPTTNLFWWKFYEIKLALREWCESANIT
IASMAEAMQKKYDKYWKKSNIALAVACFLDPRYKKKLVEYFMLKIYKDSAVAELTRFMDVVNQLFQSYLSSTRDVSITQT
DLAASTSNSICINTDIDEFIYEDNDAAKGEINELDVYMKDKPIRWVDPTGKGLQFDILSWWKANQVTYPVLSRLARDVLA
VQVSTVASECAFSSSGRVVSKYRSRLEHETVEALVCTKDWNLASNKGKTDSTYLLFLFCLLLSILSYHF
>hAT-1_DAn#DNA/hAT-Charlie 1268-2976 via tfasty with hAT-3_AC, 2 frameshifts. [Drosophila ananassae]
MTESKKKCRQYSVEYLKFGFLPSQADKRLPTCILCNKVLGNDSMKPSKLEEHLRRCHPDKKDKDLKYFQTLKEKYEKRPT
VHSMFASTSESNDDGLRASYNISLLIAKSGKPHTIGEQLILPAVEEVLKTVLHKSSLDILKKIPLSNNTVQRRIDEMSSD
VESFLCDYLQTTHFSIQLDESTLPGNEALLLAYVRFVMGEEIHEELLFARTLKTDTKGESIFAVLSDFFKEKSIPFTNVI
SVATDGAPAMVGRYRGFISHLKRIIPEVTTIHCVIHRQHLVAKNLSDRLHQSLQFVLNAVNKIRSNALNTSLFTQLCDEN
DEDFQRLLLHTEVRWLSKGACLSRFYSLFNSGQEFLGSKDPDLKKNLINFKADVAYLTDLFQKFNELNLQLQGDSLNLIT
TKSVISAFIGKLKFMKGNIGRREFSQFSNLSQVECLDEDIQTYIQHLIALHGDFNTRFEDILSMEIPPWIINPFDETEVE
NVILQEELLELSTNEELKVTFKKGYQKFWLQAEIPKKYPWAITQKLLIAFPSSYLVEKSFSAVTNLLTKKRNRLNITERG
DLRLFVREC
>Charlie8_tp#DNA/hAT-Charlie 393-2207 [Eutheria]
MSLSKVGKRKIDREGRVFQEKWERAYFFVEVKNIPTCLICKQSVSVSKEYNLRRHYETNHSKNYDRYTEKMRDEKLNELK
KGLKFQQGLFLNANKISDAAVKCSYVLSEKIARASKPFTDGEFIKECLLNAAEIMCPEQKQAFANISLTGNTVAQRVEDM
AENLQDKLREKVKSFVAFSIAADESTDINNTTQLAIFIRGVDENFDVTEELLDMVPMTGTTSGNDLFLCVEKSLEKFNVD
WSKLVSVTTDGAPAMVGVNVGLVTKLKSKVATFCKDTELKSVHCIIHQESLCAKKLKMEHVMDVVINTVNWIRSRGLNHR
QFNALLDELDAQYGSLLYYTEVRWLSRGVVLKRFFELLKEIDLFMSSKGKSPPQLTSEDWIKDLAFLVDITTHLNTLNIS
LQGRSQVVTQMYDSIRSFLAKLCLWETHLARNNLAHFPTLKSVSRNESDGLNYIPKIVELKTEFQKRFSDFKLYENELTL
FSSPFSINIDSVNEELQMEVIELQCNTVLKTKYDDVGIPEFYKYLGSSYPKYKNHCAKILSVFGSTYVCEQLFSIMKLNK
TKYRSQLKDSRLNSVLHIATRNTRPDIDILVQKKRCQVSGSKSKE
>hAT-1_MEu#DNA/hAT-Charlie 718-2584 via tfasty with HAT-11_SM, 1 frameshift. [Macropus eugenii]
MDKWLNLDRRGKNTDDNAAESSLPGCSTPKLTRKRKYVESFLQYGFTSNNDDGVEKPLCLICNEVLAAESMKPAKLKRHL
NTKHAAYCNKPKEYFERLLKSSNKEKQCFEKFVTVNEKYLLASYETSYLIAKTKKPYAIGEDLVLPAAIKMSEIVHGKKY
GDEIRKIPLSNDTVSKRISEISNDQFQQLITRLKGSPKFAIQLDETTDISNMAQLLLYVRYVYEGSIHEELLFCRPLEGH
TRGEDIYLKVDEFFTNEGLQWKNCIGVCTDGAGAMMGENVGFVAKVKAGGNEHITFTHCMIHREALVAKKISPELDVVLR
DTIKIINFIKSRALNSRLFSNLWKDMDSDYKSLLLHAEVRWLSRGRSLNRLLKLKDEVVIFLTEQKSDFVNFFHNDLWLS
KLCYLSDIFEKLNDLNMSLQGKNCNIYVKDKIESFTKKVNIWKNRVENGSLEMFTATDDFIIENNLPKDLIVRVIIDHLK
CLETQFQKYFPSNFDSKKLSWVHKPYSIEIKNVSHLPLKVQEEFAELSSDTGLKLEFPKKSLNEFWLGIRTEFPTISEMA
LNILLPFCTTYLCEAAFSALTIIKSKYRSTLKNVEDALRPAVSNIPPRFNSLCKNKQAHPSH
>hAT-43_SM_tp#DNA/hAT-Charlie 406-2212 via tfasty with HAT-6_SM, 2 frameshifts. [Schmidtea mediterranea]
MTSNNKRKHNSENREFQDRWEFDYLFIMNKGKPQCLECLQTVAVCKEYNIKRHYVSMHEKNILRAQEMREKHKLNILKKQ
RNYQTNLFTNVTKSQEASVAASFEVCNEIAKAKKPFSDGELIKTCAIKMVKAFGNEDLAKKIQSVSLSRQTVTRRIEEIG
VHITNKLKNKVNDCSYFSVALDESTDISDTSQMLVFIKIVNEDYSCSEELLHLRSLHGTTKGEDIYKEVKCVVAQYGGFD
KCTAIVTDGARAMTGKNIGLAGLIQKEGVNCQMFHCIVHQESLCGNSMQLKDIMDKVVKITNLIRGGNRSLTHRKFKTFL
EELKAEYGDLLLYSNIRWLSAGKCLKRFFTLRKEIHLFMTEFGIDENLTKYLVDENFLCSLAFLTDITDYLNVLNKSLQG
KDQNICHLYQHVTGFRNKLKLFKSNLQENNLKHFESCREFHEEMKGLNIVVNFEKFVPKLNILIEDFNTRFKQFDDFKDS
INLFCDPLKIDIDFVDPKYQLELCDLQADPFIISSGTSGIELFKLLEKEKYPKLKDFGLQIISMFGSTYICERAFSDMKY
IKSKYRNSMNDSTLEHLIRLATTNIDTNIKELVAQQIRPQCSH
>HAT-15_SM#DNA/hAT-Charlie 250-2132 via tfasty with OposCharlie3_tp, 1 frameshift. [Schmidtea mediterranea]
MSTAKKSRLYNEEWLFKYGVIEADNKSMCLICKESITVRSYNVKRHFETMHQNLISLKEAEKKEYFSQQLKQYKSQTSAF
KSFLLPKNNITCASFQLSHCIARHGKNLSEGEFFKTALLECSESLFADFEEKDCIIKRIKELQASRNTVKDRILALDEDT
STQLICDLNSTEMYSISLDESTDITGQAYLAVIIRFKSGNIIKEELIKLMNLTGKTTGAEIMKEFTLNMTEMNIDLKKIV
SVTTDGAPSMVGKNIGFINLLKPKIEHPLIEFHCIIHQEVLCAKRGLKPFDNVISIVTSVVNYISTQALNKREFSKLLEE
VDFQYSGLLMYNNIRWLSYGQVLNRFVNLLDEIKIFLHEKDNIYPELANEEWLNNLMFLCDLTQHFNELNKKLQGRGQIA
LTMYENIKSFMIKIDIFINDLNSKTMKYFPCLKKYFETSVNLKTNAKAIKQYLSCLEEIKIGFSERFNQFKQLETTIRFV
ISPHIIEYKSLELNFFNWLNIDNLEMELVEFQNSFIWRNKFIELNVELEKKAHEIENKSIEEENIILQEWNSLPSSFEGM
KRFATALLTMFGSTYACEQLFSSLNFIKSGLRNRLSKEMTAACVRIKTTNYAPRIEKLSSNKQQQISH
>Chaplin5_FR_tp#DNA/hAT-Charlie 497-1900 wised with Charlie1 [Takifugu]
HLKTLHPSHADQPLEFFRQKRAEYWQQSSRFVNATSVNQRAQLASYKVAYQIAQCKNPHTIAEELILPAAIDMVSVMLDE
ASAAKIKTIPLSNDTVARRINDIADDLKEQLVDKLKDKRFALQFDEATDSNKDCLFIAYVRFDXQTLPNAEWTHCVIHRE
ALASRHLSSELSEVMTDIVGVVNFIKTRPLKTRVFSAICEEMGAEHQAVLFHSEARXLSRVFEQIRMFLEQEHKSEVAEK
FSDENFLAKLAYLSDIFGKLNXLNLQLQGKDKHLPQVTDKISSFTRKLAMWGSXLDEGHTDSFENLHEFVDTTGYDATSV
IPHIKQHISSLMGFFKKYFPEESSQYDWVRDPFNAQVPTGFSSAEEDQFIDMTSDSTLRLKFTSQTLSEFLLGVERQYPL
LGQRAMGILLPFATSYLCETGFSAVAALKTKYRSQLNIEQELRVAVSCFKPRFEKLCTAKRAHCSH
>TEMPINDAS_tp#DNA/hAT-Ac 1149-3443 [Oryza sativa]
IEFVQEMDMVAISDGGEDEENSFDLNDEMSVSLPSSRSSSEGEDGDDTSKTQKRGAKRPKAGISLSPSKVKITRGKRASC
WKYYKVINVPSKKEKGKMECKAKCRFCHHNYAYRPGGTTTTLNRHLDKCTIYLNKLAKAKAQGTLDFPLADGSMVVHPTE
YDHDHTKLLIARMIILHDYPFRIVEHKGFNALMKWMNPSYEFIGRKAIKSECMKLYESEKEHLRKSLREAETISLTTDMW
TSNQNLQYMCLVAHYIDVNWVLQCRVLNFVEVEPPHTGIVIAQAIFDCLVDWKIEDKVMTITLDNASNNDTAVSNLKSKL
AARKNAQFDPDYFHVRCAAHIVNLVVNDGLQQIQSLITNVRNTVKYFKKSPARMYKFVGVCNTYSIKVGRGLSIDVKTRW
SSTYRMLETCIEYRNGFDYYAESDTKYEWLPLQSEWDLFEKIQPILGTMSGATTAFSGSTYPTANVFYPYIAKVKIAILA
SRAQAQTALLEAARLGQQSGLYEPDPNDVLLVTMADAMLEKFNKYWENTNNIMIIATILDPRFKMRYIRWCFSEFFGETR
CVTEVAAITDEMEKLYRKYERICRHNQGGNSPHNGHSASSSISTTTSLASIIPSGFQSFLQSNAKESSKSELLIYLDEPN
VSLEDSTFNLLNYWKVNAHRFPVVSNMAKRFLAVPASSVSSESTFSTGGRILDDYRSSLKPETVQALVCASSWIRASQND
NSAPIPVVCNAMIIFYSLFLSSLLYKMFTLDCFHREKMEMMTSK
>HAT-18_Mad_tp#DNA/hAT-Ac 1276-3350 via tfasty with HAT-8_Mad_tp, 1 frameshift. [Malus x domestica]
WSHAKRVKRTLSKGKYIHLAICSYCKKEVPADPEKNGTSSIGHHLRKACKDSPLYMKADNNQPVLTNESMGSGLVPHTFN
QKRLELKVVMFVIKDEQPFKVVEGGGYIDMMKEAQPRFKIPNRRKIAAGVWDLFVLEKSKLFEAMHNQRVSITTDTWTSI
QNINYMVVTAHFMDSEWKLHKRIINFIKITGHKGDDIGKVLEVCLNQWGIEKIFSITVDNASANDVAVDYMKKRLREMNS
LLVGGKYLHMRCACHILNLVVKSGLKELAKSVEGIRNCVKYIHSSPARLDKFRDFAILFKMDKMSNVPFDVSTRWNATYK
MLDVAYKFRKVFLRMAEENVQFRDYFEEMEMDSKKNLVKRVGPPEEEDWEKALAFTHFLKKFHDATLKLSATKKVTSTLL
WDQVVALQIEIEKKIKKDATNPTLQRVATTMMRKFNKYWGSFENVNPLMFLGQVLDPCYKLQMITISLKALGWDDRKVDW
MLKEIKKCLLDLYNEYRRGSSTTIGAPLEDVELNEEFIIQACGGDENKIEMMKELIQERREQRLLEISNEVDKYFAAPYI
SIVVGGFDLLSWWKSNTKEFPILSQIAKDIFAIPTSTVASENAFSLGRRVVDPFRASLTPKMVEALVCTSDWLRADEVNF
YKEPTEDMLQFYKEMEEVETSKICFNFFSKFVVKWFSTLILLATNMFSLFVM
>117935429_tp#DNA/hAT-Blackjack gi|117935429|gb|ABK57054.1| hypothetical protein GIP_L1_00690 [Glyptapanteles indiensis]
MITRHTAAFAAAISPHQSFTLSEDNSKHMVIKTPKEKFLIDNETNLISAAELTTAYKIVRHHQSFKSLDCNTKLSVLMYP
DSNIAARQSAARTKATAIIKRILAPHSIHQIQDDLENDIQFYGIMTDASSYKSVKLFPLLVQYFTEDSGLKIKLLGIKTL
ANELSETITKFCLATLTECKLPSEKVVAFGADNTNTNFGNKLRQTKNNVFSHLKTALNRDIEGIGCPAHILHNTASTAAD
VMSIDIEIVIIKLFKFFSMNSTRIDRLKELCQASNVEFMTILSHSRSRWLTLAPAVERVIKLWAPLTDFFKDVQSAPDVV
FLRDFFENPLAELYIVFLSTQLMMMQRQIRRIEQSKMTIVEVKRQLGEVRFRLTERNRNKVYGKRTKQVYGKLKKLASFV
EQIGVFEKEVECFFETAVNYLDDWLRPLEKYEIFMWMNLDKAPNVEEVAETVAYLTERGVQVNDEYKSEVACLRGFVDKI
AGAEWKEKNVHERWTLFFKTESGKRNLLRICQYLFAIPGHNANVERVFSLISAQWTKERNCLTVETVDSIVKCVFNYNMS
CTDFYNYVMKEEVLLKKVRDSNKYEWSKKFREENGLLQ
>Chaplin1_DR_tp#DNA/hAT-Charlie 314-2251 [Danio rerio]
MDARGKKRKITEENRGFNVSWTESFAFVANAEGLPECLLCSEKLSNNKKSNVERHFQGRHATFAAEYPVGSERKSAIALL
VEKLEERKNKFKKWIASPNSTTAASFVATREIIKRGKPFTDGDYMKESFINISEHLFSDFKNKTEIIQKIKDMPLSAKTV
KERAIKMAGNITEQQIKDINSAPAYSIACDESCDVTDIEQTALLCRYVNSDGPQEEIIKLIPLKGQTRGEDICEAVLKCL
NENGINTNHLISVATDGAPSMRGSKRGFVTLLQKALDRNLLAFHCILHQEALCAQTFPSECMVVMNLVIEMVNKIIAKAL
NHRQFRALLDEVDSEYSDLLLHNKVRWLSKDEVLRRFVACLEHVKTFLKSKDLIYPQLEDTEWLEKLHFMVDMTSHLNKL
NESLQVRGNTALQMLEAVLSFERKLTVFARDVQRGTLSHFPSLREFKESHQDHTINGDYLHNAIVDMQTAFESRFCEFRK
EKMTLSFPVTPLEIDPSLLSTFPGIIQADLEMEMADISDKDLWVSKFKRLTAELEDVTRQKAQLAQSHKWSEMEGLPVPE
KLIYDTWNALPDCYKNMKTYAFGVLSIFGSTYLCEQIFSNMNYIKSKYRTRLTHESLQSCVKIKVTSYMPDVEKLSSDVR
KQKSH
>94470471_Spu_tp#DNA/hAT-Charlie gi|94470471|gb|ABF20546.1| transposase [Strongylocentrotus purpuratus]
MASTSFDAPPEKKKKEENRIFNDEWMREFFFILPERSNAKPTCLICSRTVASVKKHDIRRHYTKTHQTFEQKYPLGSKER
VEKLAFLVKSHEYSTRIIVKSTTLQEKTTEASLRVSWILNKHKMAFSSSEVVKECMVETARLLCPNEVETFRKIPLSNDT
NTRRTEVMAETVKEKLIDALKVTECISIATDESTDISDVAQLSLFVRYLDQDAGLFREELLALIPMMGSTTGKDIHGAII
NCLQTNEIPLEKITCLVTDGAPAMVGKHNGAATLLKKDCPRLLTFHCIIHNSVLCSKLKGEFVKPMNTIISLVNFLRAKS
AKQHRDVKAFLKEHEAAYHDVPLHTAVRWLSKGKVLSRVWDLRQDLCGFLQQLGNESSQSYFDFLNDKEEMTVIVFLVDM
FEHLNKLNLLLQGKSMSLSDVKTEVKAFQLQLDVFKDDLMSEMIHFTQLKKYSPDADVEQFVSFIEALSNEFKERFSNFA
FIDNLLVMIKIPFAMEANGQWLEQANLVAPQLSKAKLQMQFVRMKADDELRLLFEQRGNESTATFWMKLNVARYGELRTL
GSTVSGMFGTTYICEQSFIHMKIIKIKYRSSMTNAHLEHCLRICTTSDTPNFKQIALTKKCNFSH
>SPMLIKE_p1#DNA/CMC-EnSpm 893-4222 [Oryza sativa]
MDRQWMYADRRSKEFIDGVHYFLRVAEANRQRGFICCPCNKCKNQKEYSASRTIHFHLFESGFMPSYNCWTSHGEQGVEM
EEDEVEDDNIPDFAQYVGFEGNQTGEEERDADGNDVADDLGQMLQDAKEDCESEKGAHKLDKMLEDHRTSLYPGCEQGHK
KLDTTLEFLQWKAKNGVSDKAFGDLLKLVKNILPEGNKLPETTYEAKKIVCPLGLEVQKIHACPNDCILYRGEEYENLEA
CPVCKALRYKIRRDDPGEVDGQLTKKRIPAKVMWYFPIIPRIRRLFRNKGNARMMRWHAEERQQDGMLRHPADGSQWRNI
DRKFKEFGKDARNIRFGLSTDGMNPFGEMSSGHSTWPVTMCIYNLPPWLCMKRKYIMMPIIIQGPKQPGNDIDVYLRPLV
EDLKLLWKKEGVPVWDEDKQEEFNLRALLFVTINDWPALSNLSGQSNKGYKACTHCMDETESTYLKHCRKVVYMGHRRFL
AANHPVRKKGKHFEHKADHRTKPKHRSGKTVFAMVKDLKVVFGKGPGSQPIESEDGHAAMWKKNSIFWELPYWEFLDVRH
AIDVMHLTKNLCVNLLGFLGVYGKSKDTLEARNDLKHMEQRGDLHPEPKEKGSHYLSPASYTLSKAEKESMFECLESIKV
PSGYSTNIKRIISTKEKKFTNLKSHDCHVLMTQLLPVVIRGILPDNVRATITKLCAFMNAISQKVIDPDRLEALQNDVVQ
CLVSFELIFPPSFFNIMTHLLCHLVKEISILGPVYLHNMFPFERYMGVLKKYVRNRARPEASIAKGYGTEEVIEFCVEFI
EDLRPIGVPESRHEGRLRGKGTLGRKAIMTVDNNLFRKAHFTVLQQSSLVAPYIEEHLALVRARNIGKSDAWITRHHIDT
FPAWLRQHLMGNESINQQLAFLARGPSGSIATFQGYEINGYTFYTRAQDMKSTNQNSAVRVDAMGHDGTTGTYYGAIEDI
WELDYGPLKVPLFRCQWVRLTGGGVMIDDSGMTTVDLNKVGYSDEPFVLANDVTQVFFVKDMSSKGKKGRGPDEPKRHVV
LPGKRKIVGVEDKTDEDYDQLDGQPPFTVTIDPSILLSNEDTPYSRSDHKEGTIVRRKYVRSTVTADVLP
>EnSpm-14_SBi_p2#DNA/CMC-EnSpm 4354-6018 via genewise with EnSpm5_SB_p2, 4 introns (4668:4751, 4950:5093, 5225:5308, 5489:5580) [Sorghum bicolor]
RGRSGAAQRRRGRRSRQPAPPPPATPPVEEEEDDEEEEEAGAEEDEEEQEQEQEEEEEEEEAGAEGRTAGSTSSATPGVY
LRGPSRLPQRPRPALRPVIRPEGARTWTVVSGARGGTATPTXLGLLCRHHFPGIVTHAGKEEPAYTFDHYAAATDTQEGN
EAERVIXRSSGKRVKDMHYEARVQAVINYYATSXGQKMTKAEAREMXLTREQYMEVTPWWCAKCPDXWEMMVDRWFGxEW
REAHEAGRERRRRMPGPAHHQGSRSLDGYGQAWVRVRGVCYVPQGQGVVRRPFDPDDPPEAYTNPSVHARVTAYASAARE
VHGPDYDPRTDDIDGEVVMRVGGGKKHGRYWIGDGVIDSSTAPTLSQIRAGPRARAPPSRTPTAXPCTAPGRRTPGYSHF
SIVRLYIAFVPLHYCNIWLPML
>Transib2_AG#DNA/CMC-Transib 331-2300 via tfasty with Transib1_AG_1539-36, 1 frameshift and 1 stopcodon.  [Anopheles genus]
MTSFKYNDIVKQFEYKNSTDYNVNKVLQYISSVININEIEKQRLVGNLKYLYYRFRTLFAKSSRNMLRFENKNRPWLALE
LKVSNVNLSDSSRGRPKKPFAELSIRNKRRFVANEQKSSVDIEQELYRVRLLAYREKNCNLMAVIDKLLSHPENVFESIK
NCGKSVSLEESLALFIDNRWSKAQYINMYQKTKNMFPSYTALSNFKKTCSPCEDFINVSETKASVGLQAVLNHTASRIIN
MKKDKIIQNFDSENVSFKNINLLCSWGIDGSTGHSNYQQKFDGVNESMVTDSELLVTAFSPIRLAQSENDGNIFWLNLLP
QSTRFCRPLAIEYVKESKEKVLESINFIKTEISNLIPFKIDLSETKYVIITYSFYMSMIDGKVLAYVTNTSSMQCCCICG
AAPNEMNSKDNLENGFLAREESLHYGISPLHCWMRFFECLLHISYRLEFKQWKVTKNFKDIFTQRKKSIQQKIYEEFGLR
VDEPRPMGANSTTGNVCRRAFSDVTKLSRILEIDEQLISRxKNILIAINCSQPIKPHALSLYCKDTYSIYLNNYSWFKMP
STVHRVLAHIGEVILRAPAPIGALGEEAAEGRHKLYRQDREIHARKNSRINNLKDIFMQALYSSDPYISSISLDKRLQKT
SKNQYPDEVKQFFPEFL
>Transib-2_DBi#DNA/CMC-Transib 4227-6177 via tfasty with Transib1, 2 frameshifts. [Drosophila biarmipes]
YEFSHAALLEVWEESNRKDDAVRGFVIKRITESDRIDLSEEHMGEILNKVKYFINYVKRNLPKCNRMLGRFKSVHSRWLG
SKMVIRIDKQPVTLKTGRKKSNYEDAGPRLKRKLASELASEEAHSTSLLLHAASVSSKKSKEPEIAFLLKKAKSSEDIND
LKRKLNMNEPIPISPDSALAFFIENGFTKQQYLNIRALNKQQGCDIFPSYNQIAESKLKCRPLEIKICETKAEVSFQNLL
DHTAHRILEMQQEVFDIWPDATECTLIVSYGFDGSTGHSTYKQRFQLNESVGLDHSLFVTTVIPLKLIDQHHRVIWINRT
PQSVRFCRPLKIEFVKESTALILKEKKNLDVEIENLNVLSYSYKSNIITVKYQTHMTLIDGKVLNIVTGTNSCQSRPLCG
AKPTQLLKTTDFNSPIFNVKSENLKYGVSPLHAWIRFMEFALRISYRIEVKKWHVKGDEKLKVSLRKKSIQEKLWIELGL
NVDTPKQNGSGNSNDGNTARRAFSNSLKFSAILDLDYKLIYNFYIILIAISSEHIIDSEKFKYLCNNTFNLYMKLYSWYP
MSPTVHKILVHGHQIITHFIVPVGVLGENASEARNKLYKSDRKSHARKCSRLANIEDVFHRALDSSDPFLSTICLKEREK
KIQKGPSQRSH
>Transib4_AA#DNA/CMC-Transib (fragment) 137-862 [Aedes aegypti]
MKFEGDDGTFSDKSMFVTSLVPLKATANGKVLFVNKRPSSTRYCRPIRIQYIKETVAVTVQEKEHVIQQINELTPFNIPM
HGRVIRIHCRMHLTMIDGKAINAITSTKSTQTCYVCKATPKDMNNLDRIYSKVIDASTFDFGLSPLHAWINFFEFFLHLA
YKLPVKKWRITNEYVNIVEERKKQIQRKFKIEMGLIVDQPCAGGAGTSNDGNTARRFFFKPGNVGQNNRAKPGTDQEMCS
NT
>EnSpm-11_HM#DNA/CMC-EnSpm 576-3095 [Hydra magnipapillata]
MQCFKCSIYFADLFDLFYHFRNFHGLATRGSELRCMFNNCPRVFLSFSKLKKHFQHHHSVVPVQTFGFNNNESCSNNLXS
ESHEDAFDTNFPSDLDQDCNNATIVNSNSITRDSIEVSVMKFVSEITSKPNITLANSQLVMENMSGLLNDVAXYASKTIK
TLAINLKVAPTNKFVFDAIKDVQSMFSIFNKTDTIYKRNKWLKEHGYYIEATEISLGIREEQKYSMALQSMHSVLVEDKC
YVVPIDILLAKILEQASSRIAFPQCTPXSLPNKIQDFVDTHTFHHHSFLQRHQKTFLLHFFIDAFEVTNVLGSHTRVHKL
EALYMMIRNIAPEYQSKTDSIFLIGLWYALDAHTDKYSYYPILHSVVSLLQQLESEQGVVVVVNGVEETIHAILILFSAD
NLGAHTLFGFMESFNAKFFCRFCKCAHXEIQTSFKAETFVRRTRAEYDMCVSECRNNNYNASESGIKHGCPFNCLSQFHC
IDQSAVDCMHDVLEGVVPLEICLVLQSLIDKKYFLLADINNVINNYNYSLADKNSKPPEVNLKNIRIQAAESWCLIRNLP
LMIGNLIPEGDAHWRLLLMLLDCMDAIFAPTITVGLIRQLEFNLEEHHAQFKNLYPEKRLIPKHHFMLHYPEFMAKYGPL
SRYWCMRFEAKHRFAKELASVVRNFKNICKTIMHRSQLKLANTLFSGSLYTDYVQIGICDTVIVGNLQSAVSNSLRTVLN
VDNCDEIYVAHSVKFGCYEIKPGCVLCHGIVESHPQFGELKCIVSLAKQIYFVCYPFETLHFHEHFHSFEXKKSNNPNTL
LVLHTNQLKDYHPYNVIXIAGEXGKYSTLCKSEIHNFLE
>EnSpm-5_ZM#DNA/CMC-EnSpm 1044-3593 [Zea mays]
MEEDRRWMYEGWKKRGALSSEWVAKTDAFLDRAFARSETGTDVRCPCSKCRNIYFLDRRTMSIDLCKNGYMPGYEVWVHH
GEDPPPRIVSEVQSHEEGDYDRMEEMLDDVRHELLTVDSENPGQPTDYEDPATPEVQKFFELLKAAEEPLHEHTKVTVLV
FVTRLMAIKSKFAFSNNCYKELLNLISDVLPENHKMPKDMYQSKKLLSGLGMDYEKIDVCDNNCMLFWKETASEKKCTVC
GERRFVEVENDDGLTVTTKIARKQLRYMPLIPRLKRLFISKNTARHMRWHKEGVRENPNVMAHPADTDAWKALDAFDSSF
ADEVRNVRFGLATDGFSPFNLTATSYSCWPVFAVPYNLPPALCMKYEFIFLCLVIPGPDHPGTKIDVMMRPLIEELKILW
EGVEAYDCYKKQKFNLRAAFLWSIHDFMAYGIFAGWSCHGILTCPICVEDTLCFRLKFGGKICYFDCHRCFLPEDHPFRF
DRNAFKKDTIVTRGPPKRLSGPEILARLNDLKLNEHGNRFEGYGTEHNWTHKCGLWELPYMKALILMHNIDVMHQERNMG
ESIISTCMNITDKTKDNPKARKDLALICRRPTMEIGENQKKPRAPFSIKPKRKKQLMKWLKNLKFPDGYAAGFRRSVNLK
TGKFSGLKSHDYHIIMERLLPVMFRGFVKNDVWKALAELSYFYRHLCAKEIKKEMMEKLEQQIPILVCKLEKIFPPGFFN
PMQHLLVHLPYEAKVGGPVQYRWMYHIERTLKKLRAMVGNKRRVEGCIAEEFKYKEIASFTGLYFAEEHNVNAPTLRYHV
DEPPISDIEIFQWRGKTVGPSTTYCFTNDEWKTALLYMYNNMEEMSQFLL
>EnSpm-4_HV_p2#DNA/CMC-EnSpm 7707-10064 (may have more exons) [Hordeum vulgare]
MEHFTLPDHFTEADVRKVKDAAFRKMAVAFKNHKRMTWEKYVKGGRKTPVFEGILENQSAHWDDFVKFKDSELAKERSRI
NKANAEKKDKFHKLGPGGYAVAMPKWDKSEKEMEDAGVTPVTKSWPPRCRTWFYAHGGGELDPKTGNVSTKACLNGADDA
LLVAIEEARSGVFQPNRENDELTRALGNPEHPGRTRGKGAIPWYEGFSDWNADYRTRARKKIAEEKKRKMEEEQRKLDYE
RLQGLEASQAELAAKFQRQQEQIDSLSQQRGSQQLQQLADDPALDTTAPSMPRSSVGSAPGDAVVLDRYPVDDITENTNC
ELHFKMKNISMKVADAVAFSNSPEATFHCNPIPAGYARVLVDEVVDPYSGLELDIPGGDEEHTLGEAIHRVILWRKDCII
FRRPPTPRHPTPRRSPPPSQQTPAPPSPPTREATPPPPSPAKCQATPPPSDKTSTPPPSPAQPQATPPPSPAQLQATPPR
PTQPRQPSSPPQQSQKRHPAAMVRSGTSRGDSTGSTGGGKRYKYGPNLSTPLPVRAYDRTEEQTNAIVRAEVDAHFGPKP
PPPPREKVPVEVVDHFIRMAQPPAPKPVDTDYERHIRKLHRQRLQKEASSSSSKQQAAVKKCGKTVAQLGEQAAQSIPPL
VVPPTTRDSTRAQYYCGQTVYVPEVGDVVITQEHIMQAEELKITVGQLLEIEDMPLIREEEIKRKYVRGQPLVEPEDVKK
LPTRMYELHQWYMDITKRSDRESLMVYVKKDDYYHEKAVAVEYSELFQLYNQDALDKSIVSCYCL
>EnSpm-6_DR#DNA/CMC-EnSpm 15512-17500 [Danio rerio]
MSYWTKRRKTLATVQEIEQEILNEYKIQTENNPESTAQVNASQNFENRDELPSCNIVSSLATDHDNPCWLDSDSESLSDS
GSISDTDQPNAESDSSSNDSVNQLQKKLQTWAASFCIPLIALTALLAILRSEFPDLPKDARTLLGTQTKVPVTKICNGEY
YHFGLVSCLLKTLDHIASLPKITTLALQFNIDGIPLFKSSKTQFWPILGTIDCDKTRSPFIIGLFCGNSKPSSVWEYLRD
FIAELRIVLREGIVRNGTRFKVVVSSFICDAPARAFVKHVKSHNGYYGCDKCSQTGVWSNKMTYPETDAPLRTDDDFEKM
KNEEHHLGNSLGPLTGVVKMITQFPIDYMHTCCLGVTRRLIQMWMKGKQLRTRLSSQQIQKISDRLVALRPFMPKEFARK
PRSLRDVDRWKATEFRQFMIYTGPIVLKGFVENEIYDNFMLFSAGMFLLLSPGLPGSMIEIANKILSSFVKHYSQLYGTD
EVVYNVHQVIHLAEEYKAFGPLDNISAFPYENYLGTLKRLVRKPDQPLQQVVRRLSEMPTKQSHKSNQESHLSSSTKDPK
LVHFSDCVLSPNQGDNCIQIDTGIAVIKNIMKQGETVHLVCQTFKKMESFYTYPCDSSANGCHRVSVLQEKTDLVPLSSV
KQKYVLLPENENSFFALPLIHCR
>EnSpm-7_HM#DNA/CMC-EnSpm 800-2833 [Hydra magnipapillata]
MLKINKRKNCGYMKRYMKNYRARSNLLAEMLNTDTLVANKKLLNIKDHLDSDNTSENEEFNSPDTYKDVDSNSMQNDTAS
LHLYDEECILEPDDVSPVSSSEDEIKITFKETTFEFLTKLAQWAIESRLPREKINELLKILDNCGRFNKGDIPKDARALL
HTPRTVNTVQTSGGHFAYFGLEKSLIQKILSLPFIFKDRTVLKLNINIDGVPIHRSSNLQFWPILCAFHGINTTPFVIAI
FSGYRKPLNINEYLEQFIDEINFLQKNSMVVDGKIYEIKLNAFICDAPARAFVKCVSGHTSKQGCERCTCEGQSVERRII
FSNAGESRTDSLFRLGQYPKHYLSKSPALNIDHFDVIKGFPLESMHLLFLGVCRRYLMFLKTGPRNVRLSHAQLNTISLR
LTELSQYTPSDFMRRPRSLFEVDRWKATEFRQLVLYTGILIFKGVLNDQHYDLFKSFFIAVRILHIDNDEYRNKLLGFAR
CLFQSFVYNAKILCGETFLTYNVHNLLHIVDDVEYFRCSLSYLSSFPFENFLQCLKRTVRDAKTNPLTSXTKRFFEASQI
QLSTYETMLNMKVSTIRRDQFFISKNEKYCEVIGISGSSDNQQLLCLVINPSQLKSFFDVPLDSRQWGILCCDSIRKLKR
KTVTLNKADVYKKLYAMKYGDDGLLFVPVLHKNECKQ
>EnSpm-6_HM#DNA/CMC-EnSpm 1318-3363  [Hydra magnipapillata]
MLILNFIKRDRHFRWRRHRSTVHALSELVSLSQHKVKNDREIPSFSSNGHNSSNSQCFSLNCXFSSSGNNDSSGKLYSIS
SSXSINNSVLASSDENAISDIRSCESITESISENSKEENDFFPDSQFDSQFCKSLKLWSLKHGCTRQCXNDLLALXSQKG
HSLPKDSRTXLGTKNTHDIVVVDDEAYVYFGIENNIKRILSLHEYQSQDICLNINIDGLPIWNSSSYQLWPILLQFGXFK
PFMVGLFGGKCKPKMSKFLSEFVQELKELLSRSVLNIKGKQYILSVFCFVCDAPARALLKGIVNHTGFYSCERCTKRGIQ
KHKRTVFDDLEKNVTLRNNDMFYNHSYSFPDNSGKRHQHSDSCLLPLPINFIQDFVLDYMHLVCLGVVRRILYFFKGTYS
GIFDGRLSSAQQNVISEQLLKFNGRLPSDFVRQPRSLSELNWWKATELRSFLLYTGLVALKSVLSKQSYKHFLSLSVAIR
MLCEKNTIKRNSNIESARQLLNYFVNNSKKHYGSSFCVYNVHGLLHIADDVEYFQCSLDEISAFQFENYLYEIKRLIRGK
HNPVMQIVLRLSELEDNPTLKEESIFKIQVGKKDSCYLVRNGIVNVTAICQDGGFQCEFYPKSALEYFFTHFVDSRDLDI
YYIKENACSIKCFIQRTDIIRKCVCLPYRNSYVIIPLMHDV
>Transib-4_DBp#DNA/CMC-Transib 528-2651  [Drosophila bipectinata]
FRFSSGVFEFSNAELFEVWRKETENQNQERSILDFISSKISRNVDVEKHKNYLKKKSSLFCLNLSGKWKICKRNKQYFQK
KYANWLQSAIKLCFSESNEIEKRQIGRPKLDYSVKGEEAQRKEAAALSKSHGCNVSLLIQTASKAARSQGLIDLSVVLNT
LAISPEKAKDIREILKCPIKQPIRASKDEALALLLDQGLSKEQYCAIRDDAKHRDADIYPLYKDIAEQKKLCRPANIYIS
DTVAKVPMQDLLSHTASRIVVLQEEVIMNTMRQQEVNFISAYLILSYGFDGSTGQSNYNQAYADQGSCDSDACLFASTVM
PLRLIDASGLVLWNNRTPQSVRFCRPLKLEFLKETREAILKEDLNIKEEIEQLLPCKIMLNDRQCIYIKFQLHLTVIDGK
VLNALTSTTSSQACPICNATPKDFLANKNFKCLEFVPLLDNLKHGLSPLHSWIRCFEFVLHAGYKLTVQKWRVTTSVDKK
TIADRKKEIQRMFWERLGLRVDKPKQNGSGNTNNGNTARRAFTNFETFAEVTGVDKEIIRNLRVILICLSCQLPIDLDKF
EQFCFKTGEQIVDCFPWLPMTATVHKIIVHSRQIMENTVLPVGYFGEEASEARNKIYKADRLHHARKHSRVNNFMDVFNR
ALDTSDPVISSKNLMKRIRKHKSMELPSEVLSLLLCNFEGQEQIEEIEDKIDDFYFMYDEDIETENIL
>CryptonS-23_PI_yr#DNA/Crypton 327-2679 via tfasty with CryptonS-11_PS_yr, 85.4% SW:2511, 3 frameshifts. [Phytophthora infestans]
MRRAPRGLDMPVGTVGQELAAVKVFNEFLVSTDLSSNALDKMHSSLSNATNMPMQNFYSLLTAFAIFLQTKKSGKARAAD
GFLAKATALGYFSQIVNLLRERYSGSLSDAKRVAKIRDKMASAIEERNLRSNVQSNDFPGCTLSDLCVLVEHLVVHADVA
TGIKGVHDAAMLAMMWHTFGRAIDTCFARKQQISISASGELFSHIARLKTSVVQGVSIYKSAERWQQCMLHAFGMLFVCY
DEPSEYLFPLVPRCAVSDLPGGHTYTQEEAVIFWESLQDNIEKETQPAPKRERKRPNIASYITEVIRDCIRNMPPNVRQT
VTPNMSSHSLRRGAAAYANASPKLAIQWISTRGAWLLESLTKAFAYIGTATREDQSVAKVLAGYEAPDLPVSTPTVGDLQ
QRLSTAEFGQLVTLRNELFRHVLGSPDPRLNVAVDVVNATYAALLIHMGTVLDTTANSATTPAYVPRYLYELERALAATN
ALLGCSITTATCREWGSHLSARWRTMNHAQLSRTATGGDSQLASTLENMLAQLTAINDRIARVEDALAASSERPATLEGV
LQPTEATAPPVAARTLSVAPATASTLAGSFLNWYTNNIWETVKGKKEQNKRADAKAAVSIMVILYQKPFSIAAPPSRADP
TAYQAWKHSVWELAIQMDAAANERLHAFDHKKPTRKASSLRKRWRQLRASHPEAYRTLGAQFLAQKLSGAAVDACTPSSH
LWAAVDLPYTHSSTHSYTQIHSTAQHIAHYIQVAPGWARTSGLETSSPALPLSYGGVRMWGDCT
>CryptonS-12_PI_yr#DNA/Crypton 272-2389 via genewise with CryptonS-8_PS, 1 intron (804:857) [Phytophthora infestans]
MSIASLAPANSKKARTTAINSFTTFLASESIALDAVHQLIDADKTGKVLRVILDKYAYPLARSTDKSRSTNTCLAYFGNV
KNWLLDKYPQQGGIVKPQLQIILSGLGKYCNNREDGAFEKKAPPCSKQDLENIVRLLYTSAAESIYLDASLVVMMWYMYG
RSSDAEQLEKQQLSILPGGVLFLRFKRVKTALLQGISLFKDPSNFLTCPLFTLASALAMQTAPSKRIFPQFLSTRRSTTC
AVDVEELSLVELLEADSIPALLEDSQSAPKRTVPGAQAYVNRLLVRVKTLGDEKQIRLTTGLTSHSFRRGAAMHANDGSV
AENWIIERGGWQLDRVNKAFGYMLGTTQADQNVARVLSGWKPKEGARLPSLRTLEQPILARALKFQALLFSNTLAFSDVA
LNLDEDVAEVLTATLVMHYPEMLLLSNENALIARMREVMSERSIGEAEVLAWSNTIRSAFTPPALKTDTPTDRDSNSMEL
LDLVKHQSEQINVLILQNRQLEKRLLAVESHLHSSVTKAVPGAPAQAPAVDQPEGMGAPQQLTRTVRPKKKGSQSLSDVW
YEWFTAEPRVYASPSMKKTTLYELRHATGYMMLFLPSGFALGVASPAFKSEVLALGEKAQANALAFLKSNESSAVAAGTA
VKAFRKFHKAGKLETQIAAFHERVENGFVIDPTPSAALPAFIRFRPSK
>Ginger1-2_AP#DNA/Ginger 478-3671 via genewise with Ginger1-1_AP, 1 introns (2249:3459), 3 frameshifts and 1 stopcodon. [Acyrthosiphon pisum]
MFRPREMCLTAAVEADEPQQQKNTHVNLKWVMDYFEYKVYPASIPDKGSRANFRRCCRPFILKDGVLYYQKTMAKVIITP
EERTQIIKLVHDGADSSLEASALSSHHGRDATQNLLKKRYFWPSMLNDVREYIKQCDACQKANPATLKVIPDLQSVSVPK
QVFKQIGVDIMTLPVVDDMKYVVVAIDYFSKWSEARALPDKSSDSVARFLYDDIICRHGCPLIHITDQGGEFLNKLISEL
FFLTGTKQRVTSAYHPQANGLVEHQNRTIKNCFLKVLQDNSNKWPYILQGVLFAPRTTQHTSTNFSPFQVLYQREPILLV
DICNLKLIDEDTIISEDLGIISDDDVFDKVAFNKTFEKMLNMRSIMEDEVYTNIEKAQVRQRVSYNKRHKTDNAFNVNDK
VLLRNLKRDDRKGGWSALPWKPKIGYYIIDSINSNKTCVLMYKGKVMKARHHLSNLKHYFDKNIQLADDIEDDVVEIPGN
AYQNVVLRYFNPVSYVWQKMQCRYFNLTVEHFHKLSSVPKFLNKPSIIIHIIGDGNCFYRVLTWWITGDKDSHTIIRKDL
KKVPIYNYLLYNFIGTIICIFEFFFFFLIVXIWATEVELLAAALLMNTTIVVYTFSNKQDWQVFHKSGRIPDTFNMHEKC
IYLVNSNSNHFDVVTSVEDNK
>5306256_Ath#DNA/hAT-Ac gi|5306256|gb|AAD41989.1| Ac-like transposase  [Arabidopsis thaliana]
MEMNAEVETQGQNQTESVTQPCQRAKRVRKKQRALCWDEFTSVGIEEDGKERARCHHCGIKLVVEKSYGTSTMNRHLTLC
PERPQPETRPKNDHKVDREMTSEIIIYHDMPFRYVEYEKVRARDKFLNPDCQPICIQTAALDVFKRFEIEKAKLIDVFAK
HNGRVCLTADLWSSRSTVTGYICVTSHYIDESWRLNNKILAFCDLKPPNNGEEIAKKVYDCLKEWGLEKKILTIRLDNAS
ANTSMQTILKHRLQSGNGLLCGGNFLNKKSGIVELWKIELLLMKYANCDDVDVREMAKKMQRKFAKYWNEYSVILAMGAA
LDPRLKLQILKSAYNKVDPVTAEGKVDIVRNNLISLYEEYQTKSASSSNSSTTLTPHELLNESPLEADVNDDLFELESSL
ISASKSTKSTLEIYLDDEPKLEMKTFSHMEILNFWKENQHRYGIVFFPKCASINLHPQLASWICRS
>39588434_Cbr#DNA/hAT gi|39588434|emb|CAE72785.1| Hypothetical protein CBG20047  [Caenorhabditis briggsae]
MIKHVEAHHGDDLKKMQQFKKKEGCDERSSLSEATDKFLLSLCTSNVPFNIVKNEYFRNFIHRLNPDYQLLTTDGIRRKL
ATTAIVGIKKRCIITLDGWDGRFENTSLYALFLYFIDSEFSRHKLFLGIQKLEGRIDAEKIGNFVENILTEYDFDFGKII
GGMRSKILKILSRIPLPFSPTRWGGSVLLAQAYFNHKILNAPLKTLSLSGATHQKEIVRVLKSETASRFDALLGNELATF
ALYCDPRFSYLPGILKNITWSNIENEVETYSGSIRVVTTDANGASHVAPPAPKKVKDDGSFFSRFFSSRRDVATTDSTRS
EVVSYQSMIQSSRPPTSSDPLHFWALNAEKFPNLSVLANHSLASPSSAAPVERLFSQCGHMISSPRRNRLLPATLNNMIL
CAALADLAKGLRDDDDSEESSEENIDDEDDGNNNNSFNPANTASYSSAVQSVPPPIPINSFSSPPVLSASPQPLINSHSS
PSSVPSASPISPISPPSPNNS
>CryptonS-6_PI_yr#DNA/Crypton 563-1441  [Phytophthora infestans]
MGKTLDSFCLKRDGKVVNKAPPCSKTDLRKLMLYLYKNASTSSDYQDAALLCLLWYLXXRASDLSLVQKQNITIDAAGIL
FVRFIRLKTSEEQDLSLFPDLDFVTCPVYAIALALVTQGSPCVDLLDNLPALPVQAAVSLSPATPLLEVLDHPDEYAALG
AAASAASSSAAAEKTPTIYSHVNRVLDRTAAIAGVEVALSSHSFRRGGAQHVNGCDGLTHRWIFDRGAWNMSTTNKGFNY
VFNTNRKDHKVSKALSGYSTNAKVPLTDLKSFDAQTREEIEAVRRTCSLHASS
>Transib-14_HM#DNA/CMC-Transib 778-2889  [Hydra magnipapillata]
MIIKYSEIVAIIKQNDKHYLAIEKCLLCCEEKLKRDLKEEEKQVITQKIKNIKKRYNELWRKQGCSSARFMKYHGSWLQT
EYELPIELKCDPQPSSSEKTKRGRPTMPFLEMSARSKRRVIANVVSNNEPETEMYLRVAATVAAQNDKKDLSHLIKQVIQ
SQNLAAVLNKINSEVVRMPPEQALSFLFDTNLSKDQYNQIRFAAKTQGGDIFPPYKLVSAEKSQCCPSEILQTENCIEVE
WKHLLKHTLERISKLQHELIEKEIPEINVVQCKFIVSYGFDGSTQQARFNQDLSENFSDSSLFVTSMIPLRLQTSCGKIL
WTNQTPQSTRFCRPQRIEFAKESKEYVIRLKEKYDKEIAELEEVVIILKSGKKLLVECNLCLTLIDGKIQAFITKTSSFQ
RCTVCGCSSKDMNKLVNFTKGVFNVNPVALQYGLSILHMHIRCFEAMLHISYKLVLPENQWQVHGKENEAIIKARKIEIQ
SRFKNKLNIHIDMPKSSGGNSNTGNVAKRAFEDPKLLSEILDIDLELIQRLRILLLCISYRFPIDPVKFNDYCFSTASRY
VKLYKKFPMTPTLHKLLIHGSQIISNSIVPVGMLSEEASESRNKIFRSDRINHARKDSRQHNLFDVFTRAMETSDPILSS
SRLQQRIQKYKKHKMPSEVRELLILNTNINNENCDDDSNSENDIDDFENSHMYETNVDSEIYQ
>Transib-8_HM#DNA/CMC-Transib 729-2639  [Hydra magnipapillata]
MKYFDIYAFIMHKPNNLQISDSGIVDKLIDAMNLDCNKQQLGTIITHLRDKWRKSYCSMARFEEKNKKWLQSHVPENLNV
TPIPIGRPNKTNFDDYSTKTKKHKVSHLTEMYSASALQFASEIKRRKENPTEKTSKKDCRMSKDEALCLLLDARLTKASY
QIIRNQAVEMGVDIYPPYNDVRDAKLLCYPADISVSDFSAEIKLQALVDHTANRICKAQYDVLSTEGTPDRLSLRYKIGF
DGATGQSIYKQISQGTVIRNLNNEQALFITCLVPLDLCGFSNGKQYPAWRNPRPSSTMYCRPLRFKFEKETAAVSKSELD
LIRVEISNLQDTEVDINNKKIKIHHIIQITMIDGKVHTALSDVTNSGQCCTICGASPKAMNDIEKMVLKKGMAGSYSFGL
SSLHAWIRFFECLLHIGYKITLKKWQARTAEDKSKVKALKQQIQNRFKDEMGLIVDVPKSGGSGTSNDGNTARRAFQNAE
KFAEILNIDVELILNLHIILATISCGLDIDTDKFEAFCLKTARLYVHHYPWYYMPQSLHKILIHGSEIIKSLALPIGMYS
EEAQEARNKDFQNYREHFARKSSRVKTNQDLLNRLLCTSDPFIASLRKTAGSHTKTKNLPAGVIDLLRSSTDDISL
>Transib-16_HM#DNA/CMC-Transib 1014-3103 Via genewise with Transib-5_HM (1 intron)  [Hydra magnipapillata]
MKRIDLLQKIKGLGFNKVNLLESLFKEVLNVYNLHEDDFNKSELTNLKNKLSVFKAKVGNKLEKHNRNYDRLILKEGVWL
QEEFFPDLVKRIKSKEGPGRKNKVWENLGERSKRAKIAHLAENNHEALALASLKSAATESNINKNNFIFIVKKALDPDKA
NEIRKNMSMHEPVKMKVEDALSLKIQCDLSDEQYQIIRNSSLLQNANIYPSLHKILTEKKKCYPDNMIFSETSAVCSLQS
LFNHTLCRVLSLNSCNKIFSELSVKDINQHGIMHFKGGFDGASSQSLYKQKYLDTTLDEVIKNEESIFQTSIVPLKLTVN
DTVIWYNKKPSSTHFCRPVCLQYKKETNVLIKEEEERLRIEIQKLEPFVVSLESKPTESSMMTAIIKYNLDLTMFDGKVI
NALTSTTSSQSCNVCSAKPTEMNDIKLIRSKPVNKEALFFGLSPLHCWIRCFEYILHLGYKLKIRSFYAKTSEQKESVKE
RKAFIQKKFREELSLIVDMPKQGFGNTNDGNTARRAFEESITFSEITGVDVDIISRLETILKAVCSGYDLDPSSFQSYCN
DTTDKILSEYNWYVIPPSVHKLLEHGLQIANALELPIGVYSEESLEALNKEIRNTRLNHSCKISRINVMKNQFNYLMIRS
DPVISSIQFTNHRCENGKLLPIEVLSLLK
>CryptonS-1_HAra_yr#DNA/Crypton 406-2538  [Hyaloperonospora arabidopsidis]
MLSHSCSKLNIRFYTRLYTSITRQHRNMSIQSLVPANTKSAMSTAVNNFKKYLASESVTVEQLNMSILSDPSGACFVAVM
EKFAMHLAYIKGSNGEFLAKNSVISYYRQVKKWLLGFFASQKPLVEDRLLEMARTLERHCMTRVKGGLVKKAASCTKGDL
LLLMNYLYMTATSSTDYQDAALVCLMWHVFGRASDLSLVLKQGLSISANNVLFVRLIRVKTSEEQGLSLFPDKETFSTCP
VHAIAVALLMQSAPCISLLPQLTTKIDVSDPASTVSIPLVELLEGGCHVEAGIIKETTSGPANTRAPGVHSYVNRILKNS
AKRAGVESELTSHSFRRGGAQHANGNPQLSAQWIFDRGAWNLTATNKAFSYVFNTTNEDQKIARVLSGWGANENVHVSDL
SVFDTNSLSKISRVQALMFSTCSNLNDSRFNVDQRVLDYFAAHLIRHYPQFKLLNASAPAVKRLEECVITAECQLADIMI
WSMKLNEVEHVEERNGNNLSNDSDLKQHKNNQATIKFQAAVISGLIEMNKRWEDRISSVESELKRPKEGDVDIFSAIHSC
EGPMDVGENSCVKNKRRKKAATSLSTVWYEWYTREPRIWMCEASRQQVSNSRKTVAYMKLFLEEGYNLDEKAKKFKEQVM
KYGNLAEASVYEFLRQRGIASHGTGSVIKHMRVAHREGALNERILSYNALLATDAITDPSPPKSQNILNIV
>CryptonF-3_PI_yr#DNA/Crypton 138-1785 via tfasty with CryptonF-5_PS_yr, 68.6% SW:1591, 1 frameshift. [Phytophthora infestans]
MARSSGMSIRSCAVAAAALTPAQSEHDCTVQFEIEESERATIQTTLSSRPVNTKRKYDRYQNEFMQWCTDRNFRDHNTVT
GGKLHLFLSSSVIGRKSKKDKDKTIGGSTVCGYVNAIVDLYNQQVTLRTNSNLHPRTTSVKQLIKNVQAQSTKTRKTNYE
DRGIGSLLDGYSSAEQFQQICDTFLSLDDLRGRTAFLLSHFGLLRGENVRDLELADMFSQRLDHEGFQPCIALVLLIQHG
KTNTFGKLQHVGYMRNKDVHVCPVGSVALYLFELFHVKQGPFPSFRQAKDWYDIKFLRGRQKTQSLRAVLFQDCAVLFDH
LPVRIRDHIIFGESFQKYRTQALAGAASAKSPVEKNLQVAMPLLSEHISTQHSETMNKLASQHTEVLQLLKETRESFTSM
LQGNMMFRLSPVVAPARSDSTDNEHHEPAQSQPTSSTVSEAHLTSTFGASPKYSMSRGISTVNELWAEWHEGIANKPSIE
YLGSTYGTKWRQSPREAKFFSRRLCVIKHVQALVGGGLSIESALDRADIERGRRSIDAFSKYLSKKKTK
>HATSOD1_tp#DNA/hAT-Tip100 1420-3816 gi|47825024|gb|AAT38794.1| putative hAT family dimerisation domain containing protein [Solanum demissum]
VKKYFTQVPKSTLASQSHSQSNQKENTNHSEVSLDSSQEFDLSSLKFDPGERTSILNYHPNHRDVIRRAYLLNGPCQPRL
AVQKYPQTNIFGSMRRFNHEWFDDIYHDWLEYSVSKDAVYCLYCYLFKDHNTNQGGGETFSTIGFKSWNKKSGLDKHIGL
PNSIHNQSKKKCQDLLQQRRSIQFAFERQSNQLKHRYYMRLSASVDVVRLLISRGFAFRGHDESKSSLSRGNFLEILSWY
AKRCDKIRDYILEHAPVNDQMTSPMIQKDIVSACKIETVKAILEELNGDYFALLVDESFDVSHKEQMAIIFRYIDRMGFV
MERLIDIVHVKDTSASSLKETIFNLLAQHSLSPSSVRGQCYDGASNMQGEINGLKMLIRRESKSAHSIHCFAHQLQLTLV
GVSKKCVEVGKLVVLISNIFNVLGSSFKRMDNLRDSQKSTIQVALDMGELTTGSGLNQQLGLSRACDTRWGSHYKSFNNF
IIMFGSILEVLESLALDARSMDERAKAMGHLEACQTFEIAFMLHLMRDVLAITNELNKCLQKKEQDIANAMLLVEVAKRR
LQVLRDDEWDSLIAKVSTFCIKHNILIPNFEEPYVSSLRSRRKLANYTILHHYRVEVFCNIIDWQLQELNDRFDEVTTDL
LHGIACLNPIKSFSSFDIRKKMRMAELYPDDFDESNMNILENQLASYIVDVRDVDERFFDLNGLCDLSKRLVQTKKHSNY
PLVFRLVKLALLLPVATASVERAFSAMKFIKNDLRSQMSDDFFSGCLVPYLEKDVFDKISNDVIIKTFQDMKPRRIQL
>hAT-68_HM_tp#DNA/hAT-Tip100 2578-4323  [Hydra magnipapillata]
FLFLAREYISCIASAVKEKVTKIINDKSFFSILSDGSQARKTKDEKELILVRVEREGTPAYFVVSLLDMNNLGGMGANAI
KNAIDSIFNETGNIPLTAAAYKSKLVSATADGASVNFGIYNGVLTQLKNDRXWLIKIHCVNHRLELAIKGAVKDISQFKE
CERFYISIFSLFRNSGKLKSAVKKAAEXLNITYYTLPKISGTRFISHRRRGFTKLLHNWPSLIVGFENALADRDTKADMR
AKISGISKRLHEYRLLCIVCSYLDILEKLSPLSLVFEKKMLMVNELKPAVDVTKASLDKLGNEGIDDIIDSYLLKFRINE
KDGTTNLVSSYFKEGHELKKSNPEFVQIELGNMANLNLECLSSAIKLRKSAIDIILPLINDRFSSLLNPIFESMDWLDPQ
LWTADSMYGDVSISLLLKELFYPLEAAGIDFKMVLSEWKAAKLVINTQYTIALTPLEMWQKFFLHHRIKFPNFCLLVELM
MCISGSNSAVERIFSILTVILTDRRLKMNHSTMEDSIIIAGNDQNFTYQEREDILSRAGDIYLSKRRVYRLDSANGSNVT
DYSSDESSXSNDLSSTSESDE
>PRKRIR_Oan_eg#DNA/hAT-Tip100 EXAPTED GENE; gi|149619520|ref|XP_001520443.1| PREDICTED: similar to Protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) [Ornithorhynchus anatinus]
MAAVQVAHWETRCQKWVENCRRADLEDKTPDQLNKHYRLCAKHFEASMICRSSPYRTILRDNAVPTIFDLTSHLNNPHSR
HRKRIKELSEDEIRSLKERKTDEAHPEQEPAHPETNHSGASAAGPEGGGAGRRPPAEEPAPLTQEEQENKDYLKSLFEIL
ILMGRQNIPLDGPEADEVPEGLFAPDNFQALLECRINAGDEVLRRRFEATAVNALFCSRAQQRQMLEICESCVREETLRE
VRDAHFFSLVTDEAVEVAGEEQLPVLVRFVDEAHNLREEFLGFLPYEADAELLAVQFHATVTEKWGLNMEYCRGQAYAVS
GGLSAKMKLVATRLLEKYPQAVCTLCSAWALNVWLAKSVPVAGVAVALGTMEEVCAFFRQAPPLLLELDGVIAVLFQSSE
EKGRQLRELCRSRWTGRHDAFEVAVDLLQAYVLCLDGIAGGGDGGEGGEGPARRSGAVIGRAVLLAGALADFDFIVTVVV
LKNVLSFTRAFGKNLQGQTADVFFAASSLTAVLHSLNEVLENIEVYHEFWFEEATALAAKLAVPLGLPGRCGRARRGRPE
AELTPESFYKEALSLPTVEHVVQELKDVFSERHLRALKCLSLVPSVMGQLKFNTAEEQHADLYRGDLPNPDTLAAELHCW
RIKWKHRGKDIELPGTVRDALHLPDIKFFPNVYALLKVLCILPLMRVEPERGAGGRRRLRAYLRHTLTAQRCGSMALLNI
NLDIKHDLDLMVDTYIKLYPAKAEGSEGPEGLLPPADPQPPERA
>XP_001923192.1_Dre_eg#DNA/hAT-Tip100 EXAPTED GENE; first 100 AA (containing a THAP DNA-binding domain) may be a from a fused protein. gi|189528805|ref|XP_001923192.1| PREDICTED: similar to protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) isoform 1 [Danio rerio]
MPNFCAAPNCTRKSTQSDLAFFRFPRDPERCRLWVENCRRADLEEKTPDQLNKHYRLCAKHFEPAMICKTSPYRTVLRDT
AIPTIFDLTSHLGNPHSRHRKRIKVLTDEEVQKIKERRLESSIEQLSKKDSDAQDDSETTDDVPRLTPEQKDLREFLKSS
FEVMILIGRQSFPYSSNAREDEMRSKEEWLFNPGNFQALLENRINAGDEFLRRRFESAAVNEEYCPAVQQRQLLDVCERC
VREEILQQVRECRFFSIVTGELVDFPEGEHLPIFLRFVDQDNTLREEFIEFLSFEGEEVTVAERLESRLMKGWGLSMEHC
RGQAYAGSGILGTKMKVITSQLKEKYPMAVITPTSTCALNVHLANGMSLTGVQVVMSVLKKSNAFFRASPLLQTELDNAI
SILCQGNLEKESILKEGSRSTWTDLHNLFEMAVDLLEPLLLCMDSIHDNEDLKWSDQVTSDAYAISEALADFEFIVTLVI
LKNALSFTRAFGKNLQGETIDVFFAANSLTAVLHSLHEVSDNLEVYHEFWFEEAVNMATAMEVPVRVPRLFLRKQQTPDT
IEIQAESFFKEYLTQPVMEYITQEVKDIFSENHLKALKCLSLVPAVMGQMRFNTSEESHADIYRTDLPHPDTLPAELHCW
RIKWKHRGKEVSLPSTIYETLQHSDVKFFPNVNAFLKILATLPVLKLDGSHGETAQRRLQAYLTDTAVSQRCKNLAVLNI
NYHIKTDLEEMVQCYLKRYPEESKTD
>RAHAT_tp#DNA/hAT-Tip100 889-3354 [Medicago truncatula]
MKFQRIDSIFKRKAVDIQKDEVIISSSEPEQVHENPRIEENESRPSKINRVDPDDIENSLERDPGKCIPIYQYPPNQKDA
IRRAYLKWGPYQSNLENYPMSGIGKAQRRFQNSWFSLFSSWLEYSPSEDAAYCLQCYLFSNKPSGRLGSEVFISTGFRSW
RKVRNGENCSFLKHIGKDPRSPHNNAMKACQDFLNQDGHLRNVIEVQSSSQILNNRLCLKTSIDTVRWLTIQACAFRGHR
EGNKSRNQGNFLELLKLLASYNDEVAKVVLKNAPEKCNYTSHQIQKEILQILSSRVRKHIREEIGDSKFCIVVDEARDES
KKKQMALVLRFVDKAGLIQERFFDVARVNDTASLTLKEAVCGILSRHNLDVSNIRGQGYDGASNMRGEWNGLQALFMKDC
PYAYYVHCFAHRLQLALVTASREVASIHKFFEKLTFVVNVVGSSTKRHDELQAAQAKEIENLLETGEIVTGKGKNQVGTV
KRDGDTRWGSHFNSICSLISMYEATCTVLKIIAKDAKKFAQRADADSSYNHLKSFDFIFILHLMKEIMGTTDLLCQALQK
QSQDVVNAVILVRSTKALIQDLRENGWDKLFANVVSFCEKHDIEVPDLNDCHSTTRFGRSRLEENQVTIEHYFRVEFLFT
TIDKQLQELNSRFSEQAMDLLTLSCALSPEDGYKAFDINTICTLVEKYYPMDFSDQEKINLPFHLKHFLFEARESSTLKN
LSTIQELCSCLAAAVPANGQPKKHLLLDRLLRLVMTLPVSTATTERSFSAMKIIKSKLRNKMEHGFLANSMSVYIERDIS
ECISSESIIDDFKSLRKRKVRL
>HAT-31_SM#DNA/hAT-Tip100 (-Gulliver?) 349-2348 via tfasty with 47203812_Tni_42-203, 5 frameshifts. Next closest is Gulliver_tp [Schmidtea mediterranea]
MSKRNSSSQPASTSKKVCPNFKPAWLLQLVKTKIPTSRELDHVKLDYIFEFNEEESTIKCKFCTEAKVDGDFSIGKKWDD
WKLDYLKRHLNHKTHIEAVEILTARRCGGLVRLITETPKDREVRIENAGRQKANPKMVKVLIDNVILAIKLNTSMNSVQE
INSHVSKYVQIPESWRSKNYAFEFVECINQVVQNEDFDAIRKSQYHCLIIDESTDIFVHKMLIIYIKFRTNFDYKTSFAT
IIQLSACDALSIVAAIKKFYSDFKLDMDKMVMMTSDGAAVMLGGYNGVAKILQRDIPYLSAQHCVAHREDLGIDDAWRGI
PLMKTLETLLRTVYTQCSVDHLWKKGKFQDLAAVMECDVLSFRPLNEVRWLSRHFAVIPFIRNYDVLIEYCKGEVENSND
PISKYCVKALTNSLNRLALTVLNDILTELAKMSKFFQKSVLSPMEAHQYVKSIIKKIRSQYLGETIFWSEEAMKLLNTSD
NTAEIIEFITKLCDHLDCRFPEEEMKDWAAFDHIGIANSNKFNFGNQNLLNLLNKYSKIIPNYSEEVKKQILSQYSNFKF
LYQTKFNSNVVSSFADMVDLANKEEEEFQELSSLIDISATFQASSADCERGFSQMNAIKTKARNRLETFHLDHLMRIKLF
LRRGNEIDVQKVFNFWKNNKDRRGN
>hAT-2_PTr_tp#DNA/hAT-Tip100 724-3150  [Populus trichocarpa]
MENQGSKRGKTMFSFFKPNEQTSTSKGHSPSNVDVSNRSEQPPFKSQRVEIDVNTLERDPGLRIPVWKHPINQQDEIRRA
YIKMGPYQPKLAEYPRTESGRQYRRFQYTWFDQFPWLEYSPSKDAVFCFPCFIFENKVPRHLTFTTEGFRSWKRVNDGVR
CALLMHVGSPTSPHNNAVKSAEDLMKVSRHIDKVLNAQTVEEVQKNRLRLMTTIESVRWLSLQACAFRGHDESSASNNRG
NFLEMIRLMGRLNVDIDDVVLEKAPKNAKYTSPTIQKEILHILANKVRKKICEEVRDAKFCILVDEAKDASNKEQMAIVL
RFVDIQGFVRERFFGIVHVSDTTSSTLKKEICDVLARYNLHIFNMRGQGYDGASNMRGAWNGLQALFLRDCPYAYYVHCF
AHRLQLALVAAAGNEISIWLFFSKLTTIINLICASPKRHTELHYAQAIEIAHMVATGERETGRGANQIGNLHRSGTTRWS
SHFDSICSLIDMYGATITVLESMVQEGSSNSIRGEAGGCLIVMKSFEFIFILYLMHKIMGITDLLCRALQQKSLDILNAM
DLVSTTKALLQTLRDAGFDLLLANVQSVCTKYEIDIPHMNASYKKATGRSCQQQGSVTVYQHYHYDIFNSTIDFQLEELN
SRFSDGTVELLVLSSALEPKDNFKSFKVDAIYKLAEKFYPEDFNEQEMYYLRSQLEHYQIDVIHHESFQNMSTISELCRG
LAETNKSQHYHLIDRLIRLVLTLPVSTATTERAFSAMKHVKTVLRNKMKEEFLADSMMIYIERELVEDIDSDSIIDEFYS
TKHRRVQL
>hAT4_SB_tp#DNA/hAT-Tip100 394-2976 [Sorghum bicolor]
MIEFTCVLRSPSLIDLNNLIGNQSTMDRFLKRKLXPTNDNDGGASGDVREXIDGGTSRRDGGATNANRTAQRSSRISRRE
VNFDELPYDPADRRRISDYIGEKLQDEIRRKYLIRGPFRPPPGFKYPQKIIAGXPRRFXPEWFAKYDWLEYSEKVDKCFC
LYCYLFRDCNEGQGGNDAFVKNGWDGFNKKDRLRDHVGARPNSFHNTAVKRCNNLMKPDRSIANAXNKQRDVAKEEYLTR
LNTSIDAVRYLLHQGLAFRGHDESEESXNKGNFXELVELLAKQNEKTKGILRNAQMVAPDIQKDIANCFAEVRFLIFDVL
IYXSNVVYVGELTVSISQIIVKSIVEEIGGDVFCLLVDESADVSGKEQMAVVLRYVDKRGLIKERLIGVVHVSETSASCL
KSNIDSLFGKYGLSMKQVRGQGYDGASNMRGEFNGLRALIMRENSSAYYIHCFAHQLQLVIVAVAKKNDDISDFFDMVSL
LINVAGASCKRKDMIRESQQERVXKAIGSGQLTSGTGLNQEQSLQRAGDTRWSSHYKTLKRISSLFPDVIEVLQYVEKEG
PNDAKRRQARGLLDYLKDFDFVFHLHLMLLILGHANSLSLSLQRKDKDILEAMSEVKLTKQKFQQIRDDGWDSLLEXVLS
FCEEHGIPKLDMEEEYIDRHKPRKKTNRTNYEHYRYDCLNPVIDLQLAEFNDRFSEVNSXLLTHVAAFSPKNSFDAFKFE
SLMELAKXYPDDFDSNELKDLGXELNIYIDNVRADERFAQLNTISELAKLMVDTXKHLAFPLVYRLLKLVLVLPIATASV
ERCFSAMKIVKTVLRNRIGDGFMNDCVVCFVEPEFLAAIPNDDIIVRFQKMEDRXRRVKL
>HAT-4_BF#DNA/hAT-Tip100 1080-3620 via tfasty with hAT-9_NV, 2 stopcodons [Branchiostoma floridae]
MGRKEQKAREKKRAAATCHKLDSFLPKKTKTAQLLDEASESRSSTLDAQPSTSDAQPSTSDAQIDNVPLTVSTNPVSGEV
SCYQDEGGGSNIVDIGEMYLRSETSNVFCDNVKALTTAQKYNFLCHHSKPPEDKTFPTQYLGGCNRSFRHKWLGKHKWMV
YSEKVDGIFCMPCVLFAADPSKGQLVTKPFRVWNKKSEKVKTHETNCDYHDEAMEKATLLKQAVERPHTTIAAQVDARKA
VNIQNNREVIKSIARAVLFCGRQCIALRGDKEDLNSPGNPGNFLALLRLMAVTDGVLQKHLQAPAMRNATCMSPQTQNEL
IEVMGKHMILKGILEEINAAPFYSIMADEVTSHNTELLAICARFVDSNNNIREDFLKFIQVDRITGRSIAEAILQFLREN
GIPTRNMRGQGYDGASNMSSKSAGVQARIKEVAPQATYIHCNGHCLNLVISKSCALPQIRNVIDRLQDCCRYFLHSPKRS
GALEKVINHNIGDETKRKPLLDLCKTRWAERHSAYQHFYQAYVFIVETLEMIAYSRHLDKYGDTYADWDTGNRSDAHQIL
KSITSYEFIVVFLVVYQYLSHLAGITVKLQGRAVDIVEAHEMVTEIQEIYKKEREEVEKGFGHIFEQSQRMAEKVGSAPE
MPRIAVRQQHRANAMAASPREYYQRNVVIPFLDHITTSLSDRFAASAKIATSLIGLVPTIVCSRDVRLEDAVAQYEADLP
SPELFPMELNRWKNHFMPDPPELRPASPAEAIKRCDTTMFPNIGVLLKIACTLPVTSCECERSFSALRRLNNYMRASMGK
IRLSNLALLHIHYDTDIDLDKVVDCFAQLHPRRLELDNLLxDRxDQR
>hAT-8_SBi_tp#DNA/hAT-Tip100 572-3085  [Sorghum bicolor]
MKRKKSNTTDLRSFLQRAATKKKQSLAIDESCMQLVVYQGQQNDNVTGTSTIPPEPEVTAEXNVIEEDEAVPLNKSNSSD
EGIGDMYQIQHDPGLRVPISSYDVNDQDSVRRAYIALGPCRPKMKKNDFPQHETGGMRRFNRKWFNEFNWLEYSVQKDAA
YCFVCYLFKDSNKFAGGDAFIDEGFRNWNSKSRIRRHAGAITSAHSEAQEKYNRFLKPKSSIRESIASNTTEFKAKYLAR
LKWSLQVARFLLRQGLAFRGHDESVDSLNKGNFRELLSWLAGNFEEVNQVVLGNAPRNCQMVDHKIQKELAACCAQETTK
LIMEELGDECFAILADESSDSYLKEQLALCLRFVNKKGQPVERFLGLVNVEDTTSLTLKQAIQSLLLKHQLPLSKIRGQG
YDGASNMKGHANGLKKLIMEESPTAYYIHCFAHQLQLTLVSVAKENNDCKWFFGQLAYLLNTLGMSCKKIRMLRIAQAEY
MIEALELGEIETGQGLNQEMGLARPGDTRWGSHYRTVMHVMALYPSIKKVLWQIGNENRGADVIGAQTMLKVFQSFEFVF
LLHLMNEIFGYTNDLCNALQKREQDIVNAMDLLEFTKVQLDVLRLDSGWTEFLAKVTSFCEKHKVKVIDMTAMYKPIQRS
KQFFRGLNNYHRFHADMFLGVLDRQLQELNSRFDEVNTELLRCMASFSPANSFAAFNVDNLVKLANFYPHDFSFEEKNQL
PFQLTHYINDVRNDENFRNLTGLAELSMMLVKKDKVDRYDIVYKLLKLVLVLPVATAGVERIFSTMNYIKNDLRNKMGQD
YLNDTLVAFIEREFFLQTKDENIISRFQSMKDRRVVL
>HAT-5_NV#DNA/hAT-Tip100 265-2225 via tfasty with 38174068_Xtr, 1 frameshift and 1 stopcodon. [Nematostella vectensis]
MTNFKRAKEILQSHSITNYHNDALLRAENFIKNMKAPEQAISTAIEATRITQIARNRKLLASIVSSLIFCGRQNIALRGH
REGQVTSSNRGNFLALLDFRAGGSGDEALANHFRTCARNATYTSSTIQNDIITIIGEHLRGQILSDISEVAPYFTVLMEA
SDVSNLEQLSICLRFVDTKCQIQETFLGFVDCKRTTGQAVSTAILDALEKWSLDIKNCRGQAYDRAANMSSLARGAQALV
KQKSPKAVYTHCNAHCLNLVIVHSCDLPMIRNMIGALNETxCFFKYSPKRHDLLVNVIKDIKDICPELKKITLISLCRTR
WVERHEAYEVFYSLFPAVLKNLEVMTNERQYLDKYGSWSWDQESRTRANGLLSTMSKFEFTITMITVMKCLSVVKPLSIQ
LQKRASDIYRAYSQVSSVKKDLQAPRRDIDVLFVKWYESSVDLGKDFDIVPSMPRIARIQQHRQNTPSSSPCEYYKRSQG
IPLVDHLSTEMDKFFSADQMNVSKLISLVPEVLVATNGCDLEEAVKFYTDDLESPDVLDVELVRWRSKWTRVEEESIPRS
AVDALKNCDAEFYPNVHVLLRILCTLPVTSAESERSFSTMKRLKTYLRNTMSTEREPSLALISVHYNRSLDVDAIIDTFA
TRHPRRLLIADIL
>ZhAT14_ZM#DNA/hAT-Tip100 622-3132 [Zea mays]
MSSRRYLSGSEKRKRKKRVDDLIDSQRGAIDKFFKSNASASTNPNDAFALAIVPVGTEEPTNENSREEEHVDINADDNNV
SDHENMSNSSDAHAQFGSVDEQPDIYDPRNWDNLDNKARDILIEKGPIREEGIKFPLDDASRHFSYAHYYRKLSNGELYD
RKWLVYSKHVDKVFCFCCKILKSSTSNSLSSLAHNGCRNWRNISTKLREHENSVEHFQNMNKWNELRTRMHKEETIDKDL
QKQINKEKERLRQVLLRIIAIVKFLGKHNLAFRGSIEQLYSDSNGNFLACVEMIAEFDLVMQDHLRRIQNKEIHYHYLSP
KIQNELIVLLSSNITRSIIKIVKEAKYFSVILDCTPDISHQEQMTLLVRCINLSNGKINIEEYFLGFLNVDDTSGLGLFS
VLLDSMKSFGLNINDIRGQGYDNGSNMKGKHQGVQKRLLDINPRALYMPCACHSLNLTLCDMAKSCGKAVSFFGIVQRIY
VLFAGSTKRWNVLCKHVPIFTLKSLSNTRWESRISSILAIRYQAKELRSALFELSHASDVEPKDKSDAKSLFDALGNFEF
LLGMVIWHDILYSVNKVSKKLQSPDMCIDSALNQIQGMVQYFEAYRNEGFPSSLIISKGIADEMGLEASFPVKRRALRKK
QFDESNDQEEILEAERGFKVKYFLVVVDMAITSLKTRFEELMVFKDIFGFLLRSTILKSLNDTKLEESCTKLADTFSHNG
SSDVEVHDLISELKILKFTLPDGILSAMEIFEHVRDLDCYPNVSIAYRILFTMPVTVASAERSFSKLKLLKNYLRSTMTQ
DRLNGLAILCIEKKMLDDIDLNGIIDDFVSQNVRRNF
>Kolobok-3_TV_tp#DNA/Kolobok-T2 717-1988  [Trichomonas vaginalis]
MCDHLFKKPSSYSSFFMPRRTKAVAKRIKNLVQSAKNRVEPYVVNTVEFVLSVLLSGATFCQSEFQFMLNNIKVPSEATF
HRVQEKVGRVIIEVARESVNYWKSRMRKCSGLLFDGSWSQRRNAMFCYVQFVEEKLKKIVDWEVISKSFKNFKGNFNGKS
NEMEFEGLKRMLKRWNNEKRVNFFVHDGDVKIVSTIKNTFKGIREYRDPGHFLNNIQKKLKLPEFRILSSISKNLLRWLR
QLLNDTHMSIKTKKFLWLNSAKHYAGNHKFCPDPEKCKMIKPWKYAKNKTAIKTLKKFLEDTVKIFDMVKKIHSTQVVES
INHIKAMLANKNINWHASWPIRMAVTILHFNESMFETIVAIRYRLNLPTMPEMMNRYFRMYDTTKDLIKAFKNSKQVQKK
FAALRAIKRGLQATDDRITLKSHK
>Kolobok-21_HMa_tp#DNA/Kolobok-Hydra 413-2161 [Hydra magnipapillata]
MGRKDRVKQRTRVTGKKRVFCGNQHTLSSPTSMTNSKKYSDIDTSSSRSATKIEYIKNDIPNKNDEKINGYRIIDVEILN
TIFESLCCPQCINDNSLVLKENFMKKKGYASNLICCCSVCGYSKDFYTSKVCNRTHDINLRIVYSMRSIGQGYSGLEKFS
ALMNLPSPMSKKNYNGSVKVITDAVTTVAKETMLEAAKEIKVNSNNIVDTGVSTDGTWQRRGYSSLNGVVTTLSMDNGKV
LDVEPMSRLCKQCQLREDLKSKNSESYKNWYKSHSCNVNCIGSAGSMEVTGAKRIFSRSVKEYGLQYTKFYGDGDSKSYP
AVKFTYPGVEVEKLECVGHVQKRVGTRLRTLKKNMKNLCGRGKLTNSVIDKLQNYYGIAVRSNKNNLQGMKKSIHATLFH
VASSKENNWHTHCPIGENSWCRYQKDKATGKSTYKPGAGLPLSIIKHLKPIYADLSEESLLRKCLHGQTQNQNESLNAMI
WDRIPKTKYVSLIQLKFGTYDAVANFNIGRKSSLLIYKQLNMTPGIYTSSLCDNQNRKRIYLAGYKNLESSKKRRKILRG
LSKASKDKYENFEGSQYAPGSF
>Polinton-1_CB_int#DNA/Maverick 269-1501  [Caenorhabditis briggsae]
MYCFKCRISTDTTDISQILSINNKQLLRGKCVVCKTKKCKIIPNSKSGGTLKSIKPSTKETKKSEIKLDDAYYNPETGFC
GINELQRKTKKPIEEVKRFLNEQDVYTLHKPARKNFKSERVYVHNIDEQWQSDLVEMIPYAEENNDFKYLLTVIDCFSKY
AWVIPLKTKTGKETASALQTIFKHRKPQKMQTDNGKEYYNKEMKLLFKESDIRHFSTYSDKKASIIERFNRTLKEKMWKM
FTYQGDHKWTKILDKLVSGYNNHFHRGIKMTPIEASKTENVQKVHDNLFPSKKLFEESPKSKFKIDDTVRITKYKAVFAK
GYLPNWSTEMFKISEVHPGEVISYSIRDLADEEIKGKFYEEELTFFNNVNDEHKIESILKRRTRKGQKELFVKWYGYPDK
FNSWIPDTNLN
>Polinton-1_Crp_4p#DNA/Maverick 13298..12513[Crocodylidae]
AIDILSKYAWAVGLKDKSGGEIAQAFKTIFTEGHVPQKLQTDRGKEFLNKSLSKLLKQYNIHHFVMNSEVKAVVVERFNR
TLKSKMWRYFTARNTFRYIDVLPEFIKSYNHSFHRTVRTRPVDVNFSNSQRVWKTVYGDYFKIKPAAPVFRKGDHMRVSR
TKGRFEKGYEQTFTDEIFIVDEVLRCMQMPVYCLKDYEDEPIEGSFYPEELQKVNPKQDRVYRVEKVLATKGKGRKKRLL
VKWLGWPSKFNSWVEANQVCNI
>Polinton-1_CI_int#DNA/Maverick 9883-10901 [Ciona intestinalis]
MSNLSELYYDPAEAGSFGGVQSLQRASKAKRTEVENFLRNQDTYTLHKPVRKRFPRRRVIVSGIDSQWQLDLVDVSHISR
HNAGTNFILTAIDVFSKYAFAEPLKNKTGKSLVSAFSKMLIRRKPNKIQTDKGTEFLNKTFQNFLGTQGIAHFTTWNSET
KASIVERFNRTLKARTWRYFTRNSTLKFTDVLQGLVASYNNSYHRSIRTKPVLVTSKNEAEVLQTLYGNFPKIKDLRLRV
GDKVRKGAHAKEKKNCSLSGRDTPTLSTAGX
>Kolobok-16_HM_tp#DNA/Kolobok-Hydra 448-2232  [Hydra magnipapillata]
MNKQGNKTKQNLSRRIKRKWNGVVGNKKSSSSYILSSTMTSSTTQAASSCSSERKIKLNYSNTFDSEKDNYFVFINFSIL
KELIAKTACNNCFQPLLLTDVDSSRKGFAHLFQLKCEHCDYVKRFNSSNKSINAKFDAVTANSPYDVNIRAIIAFREVGC
GYGAIKTFSSCMNLKCISENGFQKLNKTIMVAYKSASEKSMLLAIKDSKKVDIAQDIPCVRVSIDGTWQKRGHNSLHGVV
TAISGDKCIDIEVLSKYCMGCKMWNSKKGTPEYQCWIIDHQCEINHKSSSGSMESAGAVTIFNRSVKKNNLIYKEFLGDG
DTSSFKDVKNSNPYQDFDITPIKLECVGHVQKRLGTRLRNLVKAHKGTKTPLSGRGNLTEKCINSMQNYYGMAIRQNVNN
LYAMKKAVYAILFHFTNFENQQMQHQFCPRGLTSWCKYWALNNTNYKSKSCIPIWIKNLILPIIKDLQADDLLIKCLHGT
TQNANEALNSIIWSRVPKHTFVSKSTIEMGTYSAVLHYNDGANGVLEVLKYFGLNGIVTLASSSKVDKTRIRHMKSKSTD
KSKMQRKKIRAVKKGFIDDQQIKETTDSYISGGF
>Tn1000_tnpA#DNA/IS 2919-5948 [Root]
LSGREPDMPVDFLTSDQKQNYGCYAAEPNDVQLARYFHLDERDLAFINQRRGKHNRLGIALQLTTARFLGTFLTDLTQVL
PGVQHFVAVQLNIHRPEVLSRYAERDTTLREHTALIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFATAWL
LQNKVLLPGATTLVRLISEIRERANQRLWKKLAALPNKWQAAQVMELLVIPEGQRVSALEQLKKGPVTVSGPAFNEALER
YIRLRSLEFSRLNFSGLPAIQLRNLARYAGMASVKYIARMPQQRKLAVLTAFVKAQEITALDDAVDVLDMLILDIIREAK
KTGQKKRLRTLKDLDQAALLLARACALLLDDNTDVPDLRQVIFKCVPKNRLAESVSKVNELARPQNNNFHDEMVEQYGRV
KRFLPAVLRDLHFRAAPAGEHVLAAIHYLAELNGSKKRILDDAPEHIITGPWKRLVYDAEGRIQRAGYSLCLLERLQDAL
RRRDIWLENSDRWGDPREKLLQGEEWQTQRIPVCRALGHPVDGRKGVQQLAIQLDETWKAVASRFEKNAEVHICNEGKYP
SLTISCLEKQEEPPSLLRLNNRIKQLLPPVDLTELLLEIDAQTGFTHEFAHVSESGARAQDLHISLCAVLMAEACNIGLE
PLIKHNIPALTRHRLSWVKQNYLRAETLVSANARLVDFQSTLELAGRWGGGEVASADGMRFVTPVKTINSGSNRKYFGSG
RGITWYNFVSDQYSGFHGIVVPGTLRDSIFVLEGLLEQQTGLNPVEIMTDTAGSSDIIFGLFWLLGYQFSPRLADAGEAV
FWRVNKSANYGVLDKLARGYADLSKAESQWDEMMRTAGSLKLGTIHASELIRSLLKSSRPSGLAQAIMEVGRVNKTLYLL
NYIDDEDYRRRILTQLNRGEGRHAVARAICYGQRGEIRKRYREGQEDQLGALGLVTNAVVLWNTLYMEEALSWMRRNGEE
IIDEDIARLSPLMHGHINMLGHYTFTLPEDILKGELRALNLNINNELSP
>HAT-74_HM#DNA/hAT-Tip100? 1079-3751 Outgroup  [Hydra magnipapillata]
MPSNNGKYYFKKKYKKIQSKTIVKLFEKHKETSVQNYSQQCTSIVSESPHQSTSIVSESPHPSISSKQSYHQSTSVVSES
PHRSISAVNECTYQSTSVLRQKPPQSALAVSESAHHSTSVVYQSPHQPTSTVSENNENTILLTSVLGKRKNKKVKPAQIP
IKNVEDLRLKTTQKYEVLFPDFFYSSSKQGWFCKVCISFAPGKKSSRAFIENPGKFADHPSERANDHLNTHRHTIALQNK
QAFDEMSKQDSNIWKMLRENTLAKETLKTSTSRFVIKTFFRVTHLLIIKNWAHTHNFSDIIELIAACGCKEVKAHVLSSP
ANATYMSPEYIAKYINIIFDFIKNPLLQSLKNGGSFSFFSDETADITSIEQLTIYATFEHNSIVKEHFIGLVPLSKLTGS
SLSAPNVFDVIQKFFRANNISFKNARFACMDTTSVNSGIKGGLKAYIEDAVPLCVWVGCTSHKLALCFKHILKDFPTIIE
VDIFLLNLWKFFKYRTLAMHLLQECSEIYGELETIVPVCPSVTRWTAHDRACLVVFKGYKPILQALSTCYTERKEAEALG
LFIQASSQSNIATILMLLDVFEAIRPLVLALQSSQVGISLSDIPTYVNQANHSLVDLISGTRRKYFTQKNFIEMKSVTDE
LAFSLPATSRLKKNNNFDLSEFELNVFISFVNSFKSELKNTFSQMDFWQSLSIFDPRQLPKTLNQLSSYGKESLEQLITH
YGRPKSSNKFGALHIQVPDISETETKNEFESFKIILFTKRREWENSFDIRISKEKDQEVVNNLIKSRNNFTPQELWKVIN
NDPVLISVYANCMFLTKLLIIFPLSVACVERFFSKLKIVKNRLRNQLSHSTLERLMMIATEGPKECFDDDLLEYFVDELK
GKNQNMRIKL
>Kolobok-1_FraCyl_p1#DNA/Kolobok-Hydra 1669-4131 (clipped low complexity C term) [Fragilariopsis cylindrus]
MSILHDAAASASYPPPDLHDLVKAMNDEERTTELATFDTDFKLFWKSDNHLPLSQRLDKYSQQQFLDILIEKFPTLASME
GIVLEAGVEQINELQPGDISPLASDNDDYFLKFVAVIGDFTIKFSKELDEMISHLEEKEVLSNEILASRDVLTILVDSFP
YLSVAPAAHLELQRLFLVQIRHHFGTNILESRGGLIFHLVEIFTGCHCHHAYNNSDKMFDKGMTLLKNNLSIGMTFVACG
SFVDMFVEKGFLELNKSAVDGVEWIKVPEGMLGEDSSLILPPVPAVPAVQKRKKVAFAALNQGDNQLGPIFALSQSDHTQ
IQPGQNLGPRRSERILISQQKKPPTQSVEVAHHSSDEDDSVSKSDSVSIYDPGDDTLDPDEPMVQNDGDDNIEAAGIPDN
GEWSEQNYTDDGLWTEKGFSASLREYRPKRTWTTPAACMAGQQRKKLKANVETMTNVFDRYSQRPGMEFPSQEFILLQIT
DINGVGHKYEPLCRRKKTAAMAYGRPKALDEFKRYLESETNGENNYVNHTATDIDELTHFWRTNEAGKTVNEDADDPDDL
EDAEDLVDLNATTNAPTANSEETVIELQHSTGLDVAGVESDGQLNLNDKTNEPPAHGEKTGQANAEDAANDAGLNVAQGR
NNTSAETGISNSGNLTAATNGSTVDDAETATSGQQHSTGLKVGEGDNNTSAESSAVVVTTGTCKSNSDEIKEILQLFNLN
ATTNGSTVDDAETATSEQQHSTGSNVARGGNNQHLTVKALLSARNSARTTGTVNGSASGNSSDNRIGADNn
>Kolobok-7_HM_tp#DNA/Kolobok-Hydra 432-2198 (Kolobok-5_HM_tp close and broken)  [Hydra magnipapillata]
MSSGKSSKQNFSRKRKKKPPVNKYSKKCLSNISSEKVTSSISKKRLIMNQTNLNTISEVIKQEDDYFLFVNFSVLKSVFQ
PLLVCPECGHKKITLSDNRKKRKGFAHNLELLCESCEWYKSVYTSKECNTQNHGQGPKIFEANARAVIGFREIGKGFTAM
ETFSQCMNMCSLSKTPFSNLNDNEIYTAYEKAAFNSMKKAAEEAQDKTLSIPTKQRVTIDGSWQKRGFTSLNGVVTAVVD
DKIIDTKAFSKHCKGCSMWKKHRGSPAYNRWKADHICHINHTKSSGAMEAAGALEIFSRSVKKYNLIYHEYLGDGDTSSF
KEVKESNPYKNYNIQPIKLECIGHVQKRLGTRLRNIVQKYKRTEKPLHGKGNLTNSAINSMQNYYGIAIRNNTDNIYAMK
KAVGAVLWHSTNFSDNNIRHSMCPRNEYSWCKWQLDKLKGTNTHTNKINLPIFIHNIIKPIFKDLSDDDLLRKCLHGQTQ
NSNEAFHSILWTRCPKNVFVNRRTFELCINSAIVHYNDGGDGVKSVLSYFGLLGSVTIPKLVLKDQKRIVNNRRKSTSIC
KKQRKKLRSLYKGYLDTEKTDSYSSGSF
>Kolobok-3_Aplcal#DNA/Kolobok-Hydra 2113-3918 [Aplysia californica]
MSQQSPQPSATTLTFSDTAQYDSNIAGPSSLGSGIFRYSDGTSSESDNDSSEEEILDEDERAPDPIARKKISLMRKVTKV
GDNEGYALFHWSFLTEIIALLACPRCKSCSLSVCSDYKGGLMWRIIVSCSVCEEDIFVGGSSPGGKQKDITKRLVLASKE
CGLGYEGLCNFFSILNINKPLHHKTYQETSQKIHAAATQEAEKCMKTAAKIVSETSTVINPGQTRVPATTISFDGTWHKR
GHSSHFGVGVVIDCKTGFVLDYQVLSNYCHGCEVGLKSGDEQYLLWKNKHQLKCQQNFQGSAKAMEAEAAVTIFRRSVQH
RGLVYSRMLCDGDARSHQLINTKGIYDFEVIKEDCINHISKRMFNALENTKNSNKKELNRKLTKTKIEKITNTYATNLKQ
NAPDTEQMQSDVYGGIYHMLSTDDNPQHHLCPTGISSWCHFQRALATKEEPRKHTPTITEDVAKFVWPVVERLTRPDVLK
RCASMQTQNANECFNSLIWSRCTKTRFASLRSVETATALSVLAFNCGPSGLFAVLEALNIPVGGSHHKHQARKTGNKLKS
AMKCRKRASKWGRKDRKRQRLQLEKKRQQAEGDLYEAGAFNM
>hATx-2B_SM_tp#DNA/hAT-hATx 202-2094 Translation after deletion of dupication (bp 416-776) in consensus [Schmidtea mediterranea]
MSKEDENYSNIWKCFEKKDNVTAICNNCRKEILCKGGSTSGLHRHLQHIHLKKRKANDDRDLEKLRKTRAPLTLDKFIQT
NRPTVGEILAKLAAKDGLTFSQISKSEFIHNSLKAQGFTISAQPRDIMKLIYDYYLNIKTKTIQKIKKMKLENKKASISI
DEWTSIKTRRYLNIHIFYSDGDSDNLGLITLLGSYTSEKLIQLVKEKLELFELDYEKDIVATTTDGASVMIKYGRLSPSE
SQLCYNHAIHLAVTSVFYTKKELLNDFSENEELEDEIDENNDSEEDINDDDIIIIGADQFLLTSDPEFNILDIIAKIRKI
VLLFKNSPVKNSILQQYIMDAEKKELSLLIDCRIRWNSLEVMVDRFLRVIDPIQKTLKDLNMSHLWGSEETKKAKCILNS
LSPIKIVVEALSRKDANLLTGEGALKFLFNALQMDNSVLSLKLMNELKFQLTKRRNKPIVSLLKFLQDPKNLLEKDDKFF
YSTSKCDIIKVAKNYMQKLFNNSDQNEMDFEQNDPYLESDITIVKENNAYSNQNNLKKMLEESMQAILKTSQPAANQFTT
LMREFNLYETTGELTTNLRNLKDAMMTIKPTSTQNERNFSISGNIVSKKRSRLKDSSIDCLCFLKHHFMKK
>HATw-5_BF#DNA/hAT-hATw 1461-5159 [Branchiostoma floridae]
MDEPAPTITNMMVAEIEAFRTKTKATLPDAKQWLEGLLGKGFFDDVKKTSFEYSLTSRREKMNKAKQNKTPKLLDYLKQT
YTKPIPRNAQPNNPEPSTSNLSQKLEAAKKSKGILQRELKEKDLEIQGMVVKNFSLEKQLEAKDRQKEKEEKRMRKKEKL
LEKREAEMKESAIELNIRNWKEKLRRRDSNITKLKELAKGSKNTAAKLQQLKKDKGKGSRQLQYFKKRTRALEEELKDLK
KKNKTKDKRLSQLEQEVEDLVEQALEKREIKLREGPHKNSAFTEDVRECFMALLTYEVSSHNLSKVAWCVLTILAKIKVK
LSDFPGETFCQEMRNEANLTATVHVAEVIAQKSNNTIHSDGTSRDQQKVVGLQASCGGKTATMGLQEVTSGVAEEQLEAF
KFTCNKMAQLTASPERVEARYNELVSSFKNTMGDGAASQKRFNQLLEEYRQEILPHVQQNWETLTTQQQESLSKMNHMYC
NLHALIGFATYADEALTELETKVWRARDGPLGVEDLREFQDKNGRYSWPLKDSATQRLVRTTCSAFGPEGSQSAGRIQAF
KDFLHLSSKSVDGEEVQNKKSLVKLLSFRANRFNIVFKAAAAVYHHNGDIRRLFEEGFVKADNKLLKAVLADCSCDPLLA
GCRALGIIAVQITEPYWRLIEMKDVHILDLSSHLQSALAKFKQWAKDATPLLQPDMPPLFHTTQPVQPIKDEVFNSLYNN
TSDNISTMTKQALEVILSHMIVVLERRFPEQLYGAYSDSSNPTQREEMKGMEKSNRRGENDFGYWSQILTTKPSISLMAA
EGQLMFKTNKTAEWLRKLSKDNPGRYSAILSLVKKRKNEWKKKYAERENEQQEAREAKLQAQAEEHARKIKKKEEQQDGR
KKQLEEYGGPASTPAECEEFIATVSPLPENKEKLALRAHITYLKEKHPAFAKSNSLFILSSGGRDHKPDILSANLRSILR
SPELQTQSEAATEPEEATTSAPQQRLTAEDANDKVDRIKAQFAKKAAECSKQPRNVERPVEGAENSESIDWDDSEEESDA
EESDAEESDAEESDAEESDAEESDAEESDAEESDAEESDAEERNAEESSEEDGEESKQHREEPPAKKQRLSDSEKDEEDE
EDIVNGSMVVVAYEDDWALGEVKEVKDDGELVIKYMQRKKSKKGKCTFFWPRRGCVYTVEDKFILCTVASSSVLPNKDTL
GRDSVISDDDFTEIQRKYNIYYNQYFAKGQHR
>HATx-6_SM#DNA/hAT-hATx 310-2110 via tfasty with hATx-3_SM, 3 frameshifts. [Schmidtea mediterranea]
VWEYFKKIPSTNKKVAKAQCLKCMVFISNSNGSTGAMINHLKLVHKIHCKRDNDESVLVGARTKLQENQRASNSMMNFVK
RHSLEEIVSKLAAEDRISIRTITNSSFISESISSRGYNLPNCETSVMKLIHTNFEERKQEVIKKLTTIKNDGNKFSITLD
EWVSARNRRFININVHGNNENCNNLGLVRATGSCTAAVVLEIVTKHLELFNLSFQNDIVCTTNDGASVMVKYGRDCPSES
QLCLCHRLHLAVVETFYKKKVFESNDVDIIEEDDDDDFQDNEFFDDDVNEEEFADDEDVDIQKNLKNVRILIKFLKKSSV
RNSILQKKIIDEIGHELELQLDVKHRWNSIHPMLEKLLRVRIPIQNTLIELNALHLVSGIDFEKFSSLMNAIKPLTLAVE
TLGRQDANLLTAKGAMNFLYNKLNECNDVICSTLKLNIERRMKERENSTIIDTLACLTNNSIKPSKIVLEFASNLFARLF
ESSSSISPSSSPEHVDLNTDAPVSLEAELDAAINYVTCENFQKSNLNIKDDFIIFKKTGQRPEKLEKLFEALTTIKPSST
EAERTFSVSSHFCGKLRTRLSDYSLNCLVFLKYLYINEKK
>hATx-20_SM_tp#DNA/hAT-hATx 1660-3642  [Schmidtea mediterranea]
MFQKIFKEFSTGARVDENSVWFYFLRDKENQLSKCKKCGKEIKSHGGSTSGLHTHLRTNHEIDLLKRKSNQDAASSSALF
SSAPLSSAKKPKPLITDFLQNQHDKSLPAVFSRMTALDGLPFSVFATSAELRTSLGARGFIVPKSAATIRNMVVKYANTI
RETVISNFTRLRTQGVRFSLTFDEWTSIKNRRYLNVNVHTEDEFWSLGLARVVGSLPAEKCIELIQKVLTQFMLNYDEDI
VCITTDGASVMQKVGRLSDCDQQFCIAHGIQLGVLDVLYKKPSTSAKTILKGSSNDERSRENEDDDENLTNDDEEDFSDG
FQVVMSEKDDTIQLTDELQPLIAKVRTVVKLFRCSPTKNDKTLEKYTLDEFGEALPLIFDSKTRWCSLHTMLARFMKLKN
CIRKSLIDLQSKIEISDKEFDTISSVVACLEPVKLAVEALCRNDATLLSADTTLLFMVNYLGDTELAVKLKAALVRRINE
RRTPFSSLLHYLHKGHQRYENLDPALSFEHLSKSTIVNAIVQLNERLNQRADEPLPSTSVSFDSDSVDSTANLSLKEKLD
MAILNDKKCKNKERLNVSKDLSKTIRKEIAIFEEEGTRGTYLQNTYEYLKTIKPTSVESERVFSASGNFVTKLRSSLEDD
TLNALCFLRAYFTKEKNSAK
>HATx-10_SM#DNA/hAT-hATx 644-2541 via tfasty with hATx-2_SM, 2 frameshifts. [Schmidtea mediterranea]
MNGKKETPWKYFKREKDTGICQIQACGKRIKAAGSSTSGLHSHLRTKHNINLLKRDHDHINNDAVVETSETIRSGQITSF
LRKKIDDSLPAVISRMIAVDGLPFISICKSYDIRKLLEGKYENIPKSPSAIQNIVINYGKNAKKEVTDELLFRKRKLIKF
SLTLDEWTSIRNRRYLNINVHDGTTFWNLGLSRIHGKMPAEKCEEILRNKLENFNISLKDIVGCTTDGASVMRKFGSNLN
IIHQLCMAHGIQLAVVQILYKKDKPTEIDEIENQDQENIEIEDQELLNLKTMLDDSLINDIKDPSVNCLINKIRTIIKIF
KKSPTKNDEVLQKHVSNSLRKEKSLLYDSKTRWNSLLTTLERFYELKDCIRKSIIDLNLDFAFNQAELKLLHDIISALQP
VKVAVEALCGSDINLLSADVVLIFMLDELTALNSALSIKLKSELVYRIQERRTIYSKVLQFLHNPEQQNHNDHSIFKLPS
KTTITKLIIELIEKLNLYEEENENEDDENPEEVILNEDMPSDNNFCSLKEKLYIKMHQNLHYNVRNERVNKSSNLQTTIR
KEMKTFCEENIRGKHLEMVYQYLKTIRPTSVESERAFSAAGLICTRIRSRLADESLDTLCFLKSYFNTKKIL
>HATw-4_BF#DNA/hAT-hATw 1140-4151 [Branchiostoma floridae]
MATNGDILQFCGQHKRLKVREKMELLKETFTSIDSRVGTKVLWSSISRLAGKRKKLSKDKKELKSLLNQTFNSPKQNQTP
QSRAPWTPRKKKLAKHLEEARKANKHLKKKLGSAEEWKNNMQCVQTELETLISEYTAAVQECDKITEDTEEKMKLMNNNN
GELEKYIKEIENAFDSQSKKLQDATEKLSKWNVRNFNKREKSKKKKISICEEKLKHQDTLIAEMMARIKDLEVTNKKLTT
EKVHLQKKASTLKAKLKMESPQAIVCANTEKIDKLEQEKCELEEENTMLEDTVKAMKTLETKHDKGYTNQIREVVIDLLS
KNVSVKHVSSVIRTVLEKLAKMNITGHLPSETLIRTLAVEGRMLSVIQAGKAMLEGHATLHNDGSTQEKKKFNTTSVTTP
SGTLSLGLYEMAEENAQAVFEGNKQTLKEVAEILAKFDSTDPEMELTNLLSMITSTMSDRGSVMKAFNSAFEEWRGEIIK
DTSSSVEKVNNFYCYMHVLINMASVALDALKCFDVCAIEKKGMPTKNGRAVTEDALYAACRTFQKQCDERTGQAAAFQAF
LYGKDPGRKCQFSKLIGNRCNIQFVNGAAFFFHLEDMREFLEIWKGGGTLSMSHSCLQQHLSNKVAIAGCRALGILEKRV
TTPMWREILAATSILDLNRQSLTMRAEFLRLSEDASELLVPDNKTIFPGREVVDEDDVCHALLKDSEDAELDALTISALE
LIFSSWVILIEKQLTDYLPGGMYDNPDENLKQKSKHVPTTNVTCERSIGYRNRLHQLKPSAKTLHIESLLLLSTNHTVDW
LGKLSEDDKERALETARKAAPGCIKKQKEREQEILSHRLELLRQKQDEKERKIRRVSQEKSKICEAVRQDGGEWKTPEEV
EQRLCECATDSKKKEKILAQLRFHKVVLEDPLPTDKRYLVQQQMTVNGSVKKFSMSELKENLLELIGMNTLRCNNNNEED
EDEDSDQEVEQGTKYMATDRRLELIQAEKAKLKKKRDKQRERL
>hATm-58_HM_tp#DNA/hAT-hATm 835-3589 via genewise with HATm-3_HM, 1 intron(1345:1617) [Hydra magnipapillata]
MDILQHFKYCQSNLPNGITKKLDILYCPPKSNLKVDRCQLVECECIMAKIKHPWIKAGFPVISDVNIRKSLKNLEQKYSN
LLKNVKRNSKQDIKNQIGFENFVKRIFWIGIPELKDFIQSDKLRSNESKIKDLQFLEDQEGPRLYHLGPLDTKYTKKVIX
DYVLVVRICIVLINLFLYKVKSLNIKKCKNAMKNGSPSKILKFYEEDVSSNDELSSDNFSDSDFEPGEWIKRKNKPSSTK
IRANIPKDIYSGNVALMATVNNISPMVLQRITTAVVQAAGVDMNAIKSSLSTAARRMKRENKEISNIAKEDIKTKVRLST
FPCIIHFDGKTIFETIKGKKLKCERLAVLVNINGESHLLGVPSLPSSSGDDQYKGIMQLLDEYGIKSNVGGLCFDTTATN
TGITKGTVNRITYDLGKYILQLACRHHVTELRISHFQKHVTHEEKVGPENLFFKRLRNKFDNPEFHYNPENILRFDWSLK
AGTVVEKAATDALEYCKKYIKKKNIAREDRKELAELVIIYLSKSGIVKIKKPGAVHHARFLSSALYYTKLHLLSKQLKLH
LLSKQLDFLIKEEDVKAQVEQIVEFICCFYAPWYLQSHNPIKAPYLDITALHQMTLYKDVCQVKEAVDKVIDSILKHSWY
LDSTLIPLSLLDYKVPDKDKTLIAKSILSYKMPSLKASDYKIENKPKVDIKEIINLDSTTASNPPNLAVLVNEFSYFIFA
VNGFTEERIRDWLSLPPSFWHTQSYYNQFLAYAKTLIIVNDHAERNVGMMQEFIHRYISEEEKQMRLVTIDKVRYAMKKP
EKSSSKMTKRNMEIGLNNINNFKKFKSD
>HATm-56_HM#DNA/hAT-hATm 1884-3242 838-3245 via genewise with hATm-9_HM, 2 frameshifts and 1 intron (1467:1597)  [Hydra magnipapillata]
MAKSTRAQTILKCPKLHELLGNGLELCLSELPTLRDCLRYGILLRDRSVTHLDTRCMCIQIFIKIKSIWMSANSTIPMVS
EKYAVDKLVLEWNIAKDIGKLRTTKKKXNMYTDKLDKLFDLTKCKCKILCCNENGCNGCLFKAHVTCICPKVAKIPLQEL
FFLQAQRNKIGNKSSLQIGLVDISETHRLTRYLDRKESDSKIPGANSEDIVEFQTTNDSDIGNKKANDTEKADFSLKKNY
LDITRVSQAAIRYGVSNRAAAAIATATLASAKDAHFLKKNTDIFVDHNKIKRSKTKLMKEIRGRAEKVAMXDNIQCIFFD
GRKDLTKYMREEEDGKLHQSEKKEEHYSVCSEPGGKYQFHFTNNSEERVETAAEQIADNLYEWIMNHDVGDYLVAIGADS
TNLNTGWKGGVIHYLEHKLDKKLMWIICALHTNELPLRHLMIQLDGKTASKNNFSGSIGKLIGKATSFKVKDSIKKIEFP
NAIIELDSEVVKSLSDDQKYLYQITHAINAGVFPENLKGKEIGPHSHARWLNFANRICLLWCSEIVLSVEETYNLQLLVE
FIVGVYAPLWFEIKVKWKWTEGPNHILKQLKLLSYQRLKVKDIVMPYVLSSSWNAHSENVLQALLCSLEKAERQFAVETI
LKLRGDLKYGNTNVRSRKHHIHNENAESLFDLIDWSLDVHEPLLTCLLSKDELLKYNDIPMCVPCFPVHGQAIERCVQVV
TRASQSVFGKDRRDGFIRATLAHREIMPVNQSKK
>NAVIHAT1#DNA/hAT-hATm 3265-4878 via tfasty with hAT-10_SM, 2 stopcodons [Nasonia vitripennis]
SIIxKYTSSEKATEPIMTAKLATVLDKCKISKRDVMHLLMAAAEAFIIDTRNLVLNTSSIHRVDQNFRKERYEAIKKLAP
QLFSGLPSTIHWDxKLLSGYLRRETTDRLAIIITSNGMEQLLGVPNISSSSGINQAQAVFDTLNDWSLLENIEALCCDST
ASNTGRINGACVLLEILIDKDLLYFICRHHIYELVLRSTFEIKFAKTTGPEVQLFKNFGDFWKSVDQTKFEPGISDTFVI
ESLQDVKEEILDFCSKYSKKDLNRSDFKEFLELVIIFLGGKLPSGITFYAPGAIHHARWMAKAIYCLKIFIFRKQYLLDK
KDVEVKCRAVCTFIVRVYVHAWFCTPFAAQAPNQDLKFLKCLYEYRRIDESISDCAVRKFMNHLWYLTPQLTALAFFDFT
ISNKEKLKMCEALQSNTSAFVYGKRILANEQNLDKIVNSSVSDFICKDTYETFRRLKIDTTFLEKNPSKWAKDRNYTHGL
EVVKNLRVVNDTAEVKLITEFNNLLTKDEKQLQYLLPVIKDYRSLFSDSKKETLMRPI
>HATw-2_BF#DNA/hAT-hATw 1500-4916 [Branchiostoma floridae]
MASTSDGSVAADLGGMLASGVRLKTVDEFTNEFVIHLRKLQGNASMCLATDLKQLAPLEMMKDIEKCKEDSLRKRMDSVY
LNYKKLSASKNKEKLAIYCKTQFELPKSRESPTAAAAESTSTQYKLKQTRKELKDSKKRCAQSEHEVYELEQSKEVLTQE
YFSVVSQLHENADSFRKIIEEKSDKVSDLSKALSAANKTNDELTAKLDSLEARLSRVGTVKNVNKKVKRRDETIQKKNEL
IEQLQGAVSAGNQELNELREAQEHQTSATEKVRALQTKVKSLQDSKRKLQVKLQKIEEDKVQVQTDLDATVDTLNGKIQD
LENENKHLEAVQSLMDSDTVTTFHEGRYSNDLREVIMNLLTSGVSLKKVDHVITTVLSKLAGKKIDRFPSVGLKHRLVIE
AKILGDRQVAEAIIAGAGNAEQGNCLHQDGTSKFFKKYQTFDVTTPTGDTLTMSMTEVPSGDAAGILTAFSESCRSLAEV
LCEPGEDVAKKTAEIITSFTSTMSDRGATNPLFNKHLESLRRELLPVVKDEWDTLSDEVKDELGDMCNYFCKMHLLVNFA
TEANVTVKIFEDAVSEGKNPFAFAQQGESGAARLIRTACSAFTDRGNEKSGAPQFFQSYLSQHGEQKNYMVTYRGNRFNI
LFYNAAAVYHHLKQMVTFVSSWPDANNLLKAVKADASQKVYVAGVRALGIIDKTITGPFFRVLGTEKNILGMNTHLHQMQ
IGLERWSRDASTLLAGEPLFNETEVERHKDALFDSLFAATEDEDLDVLTQQALEVVCSALLILLERQAEEQLPGGKFWKP
TETEVTKSQHVPTTNVASERDFAILDNLLRAKPYGTSLSFEAHLLWINNQTSAWLRNLTPEERNKHMDYARTNASRVQQR
FKERQSEIKEKRLQTLLERQRQKEEKRRKARLKTVALTDKVMNMGGVWKTPEEVEDKVKTLNKEQEKLEAIKFQLQFHKQ
VLKSEGSKELFQMTITKPGKKKHTFSSEEKILHLKEVVMKNVSGVTDIDLDSEDEDDQEYVTLKEPEARTVPEMRVKLVE
KRDIAREKREIDRQKQSLPVYIKDPSKLVGCRVKHQCDSTDEQGNKEARWFEGAVTEIVNRTEEAKDTVYKIVYDDENES
DEEFNLLSDLAKGWLIIL
>HATw-1_CCo#DNA/hAT-hATw 508-3441 With hATw-1_LB distant outgroup to other hATw elements. [Coprinopsis cinerea]
MPKDRKKPRAGRSKKQKQQLLQAQAARRLSHQKNDARTKRAAGNVLRAKKKELEKELEATRRESERWKQRYWNERRRTIR
MGKAHQQLKATHKVVMAELRRMRGVITTMEKEFMEARKEADEEMGALKQRIRALERSRKELVHGQTVVRKRMARLAAAKR
NYQRKLTELVKSKPSVFNMVKRGVYTKQARSLARYLASTGTAEAKVGKTIKRIAEAMGLQVDRVMSKHTVQRSILEAGVA
ADIQMAFEMAKACSECISFFVSKVLATYQVSELCYSSDSTSHKHIEYESRFIALQVVDYERPDQEPQWVLRSLGIGTSVD
HRSETQVQGLKERLADLADIFNRSPLAKREGIRFSADNFAYKLIGTSGDHANDQKKSHKVLHEWRMDVLCYRMGKEALMK
MDPVLSAAILLPLKWRQLQTIGQSVWEAMTEEEKGEKDDEVIREFGKAIFENLPTNDQAKLSRFIRTGCCMHKDLNCFKW
GDKSMQEMWKAKGLVPPCLLANKENVSILEGCVGEEPVTADQKRAMDASKRGGSKTVELGGMICKNKDSKKGQQDTYRFW
MVEHLGFELPYPDVSNTRYGSHGAAAATVLTQLPAFRQFINHVHDTKDRPGYTNIEQNFARALDDIPTITEIAVLALYHV
AVSQPFMRYVRQEKNLLKLEPFFNRMDTFLASVATSPTVWSTPGHPYGSVFLDSNTPDTFSAEVLNVVHQLAPTLPHLDD
SISAFTTGAREAFVERFSDEFREGNGIDSLTEAERDDLFFASTNDANEGALGSWRLAQRRRVSETLHKFNASFTAELNGT
EFFIEHMLTEEADEIYLRKEARLRDEDGLQRQLKEAQVEADRKKAEENRLKVARREEKEKEKANAILATGQNLILDDSAI
EKLTNDGLNLQLDYHRDLEKSITSIPDTDRIPLKSHMKLKSDRIRNLKLAVSRYRSRQTISQPPVEPPTIPSASETGPVT
SEHDSSYEYDYYDDFYT
>hATx-22_SM_tp#DNA/hAT-hATx 616-2598  [Schmidtea mediterranea]
MNTFTEHRKGQDEASVWNYFLVEKKGQVAKCKKCGKEIKCTGGSTSGLHTHLKTIHGLNLKKKCEFTNDVESCVSKQPRL
LITNYFKNNKNEQLSEVLARMTARDGLSFNIFIKSHDIREGLKARGFKNIPKSAVSIRNMVLEYSKIIKQSTVQEISKLK
SEGKRFSITFDEWTSIRNRRYININVHSVGGTMWNIGLVRAYGSVPAEKCLSLVEKKLRDFNLDISKDIVGVTTDGASIM
VKLGKTIEAEHQKCMAHCINLAIADVLYKLPTNLSEDVDFVEQINGDDDIISVDDNDNDIDEENDNGIIIEEYASITKNQ
LNIRHVDISSLVSKIRNVVKTFKYSPSKNDKHLQKYVKEQLGKESALKLDCKTRWNSMLSMLQKFEDIKFCIQKALIDIS
SDIHFSDKEFNLLSSIIAALTPVKLTVDALCRKDANLLTADASLTFMLDTLSQQNSAIALELLEALKSRILLRRTELSQI
LQYLQKGVQDVGEVFKRVSKFTIIKKIVSLTKRLTHENPEDTEDMEVVQETSLPISCKVSSETALDYNMVSIKTLKKQLQ
TAIEETLNTSPALACKKVQSLEQKIEDEITFFEKTGTKGIYLQNVYDFLMTIVPTSVESERAFSAAGYICTKIRSSLDDE
SIDCLCFLRAYFNKKNASYQ
>221116986_Hma_tp#DNA/hAT-Tip100 ref|XP_002165255.1| PREDICTED: similar to zinc finger, MYM domain containing 1 [Hydra magnipapillata]
MVDGGGGFLKLSFGIMKNVSHKDKLDEAITAKDPALWAENMSKVERDAVVLQGPHKNPLSFPRDSNKIKVPESVFHEITR
NGEKINRDWLVWSATSKSFLCFPCSLFGSKQACGAGINSHLLRWNGGINGNWRKLAEKVKGHQNNPHHRDNYIKWKTALE
SLGNQCGINSSLEKLIRNEAARWREILKCILDVILFLASRNLSFRGSSKMIGDDDNGNFLATLELLAKHNKTLQLHLEEV
SRCQQEGKQTIAHYLGWSSQNEFIKECGRIVYGAIIKEAHMAIYYSILVDGTPDVSHTEQIAFVLHFVYYGIDKKWVVKE
RFLGVESLDKKKGVDIAKLIIDVLNQNDIDLKNCRGQGYDNGANMSGVYKGVQAIILQRNPQAFYMPCSTHNLNLAGVHS
LESSVEMKNYFGRIQLLYNLFSGSPIRWKILTETTGLSLHQTSQTRWSARIQAVKPLVKRPREILLSLQKLRDLDLTADL
LIDVKSLEKWIQSFEFIIMTTFWFKALQAINYVSVSFQSENITLDDEMKLMKILIEDLTRLRSCWPELINEAHLVASGLA
SYGFQSKLVQKRTRKRKTFYEETRNEVHFLENDEKQFEVNVFNTALDTLIQQIKDRFQAAEKTTNSFSFLWLSESNSRSS
EEKEIEQPSLEEKCKTLAQMYVNDVDEDKLILEVRHLDTLKRANLFGPKEYLTSMKLLNGIYQKGLESIFESTCILLRIF
NTIPVSIAEGKRSFSKLGLVKTTLRSTMSQDRLTNLLVISIEHDLAKSLCYDEVIENFALNKARRVKFL
>47777435_Osa#DNA/hAT-Tip100 gi|47777435|gb|AAT38068.1| hypothetical protein [Oryza sativa]
MERYFKPIKKTSGTKGDVAEDENPKAEVAKKPRVGIVLNLDDVVADPGLRRPIEEYDVGIRDQKPGVGKSGSDVFSKSGF
QNWKKASESFAGHVGGVNSIHNNARRRCEDFKTSRRIATPERPCMNAILDVARLHLKLGIAFCGPEAILGNKGNFLEMLD
WLRSFSESVDHAFKEHAVVFNEMTSPEMQAIFVKSCVEMTTQVIVDEIGDGYFSVLIDTPHDTLMVDRMSVIVRFVNRQG
QVIERLIGVEYTTGDTGPLMKLALDGLFARLGLSISKLRGQGYNVASNMREEFDELKSIILKENPHAYYIHCFANRFQLA
VVSIARSNKVVGDFLYYVDKIVRAVGDSCRTKDAMLQELYGKIREKIVRGDALPKIGMHPENDLSGPAHTRWGSYSTTLL
NLLTMWDVVLDTLVTMCDKGIYPEPGSIPSDMIEQMESFEFVFVLHLMIRVLIWTDDLSCLLERKGKYIVNPLELITSVK
NILQDLKENQWVDLLEEVKRFCILKSIPVPSMDDSIPVRGRSRHRGLVVTCHQQYYVETFIALIDLVTSDMNNRFSKTFM
DLLRCFACFDPDDSFSQFDVDMLLSLADIYSADFSMTDREILREQLHMFIIHVRNTADFSSCNDLATLALKMVQTEMHVA
FPLVYRLIELLLVLPVATPTTKRAFSARNIFEEDFCDNRSGDWLSDTMLCCVETEILAGIKNENILQHFERTRSKRN
>Arthur1_Api_tp#DNA/hAT-Tip100 193584638 ref|XP_001949544.1| PREDICTED: similar to zinc finger, MYM domain containing 1 [Acyrthosiphon pisum]
MGPRSRLSGSGYRKKAAAKSLENNIIETNDIDTDGLNENHCSVDSVDLNERNNIIEINDIDTVDLNEKHCSVDLNERNNI
IETNDIDTVDLNEKHCSVDLNDNYVDNITRNLISPSNDPAYWCVDDTTRNYISVNGISQNIETIDFTKSKRTSKNVIRGV
LKIHYRYCSSKLFYMILLNGEKVKRNYLVYSESTGSVFCAPCKLFGSTSVFATVGFSDWKHAEKRISSHENSQTHKTNVL
TMKDRGKVAQRIDSALILQIEGEKNYWKNVLKRVVAVVKTLSSRGLAFRGKTDKFGCNQNGNFLMSLELIALFDPFLATH
IEQFGNKGKGFTSYLSFNIFEQFITVMADQVLTVIVEEIQKAKYFSIIVDSTPDVSHVDQLSFVVRYVKDNGTPIERFMC
FLPNSGHKSEELTDEVMTTLSLYDLDPVFLRAQSYDNASNMAGAYSGLQARIKEINPLAHFVPCAAHSLNLVGTCAASAC
REACEFFDIIQNIYNFFTASTHRWSELEGTVKCLSATRWSARDDACHSLSKNWNNIVHALHKISNNRNEKPSTKCEAVGL
LKKLNRLETVFMTIFWTNILDRVNKTSKKLQSVDIDLITVVELYQSLIHYVESLRNENSFKILEDIAITKSGIKDYNDHN
KRKRKRKIHIDENNDNEVLFSEREYLIINTYYVILDKLSNELKRRKLAYDELVKKFFFFFKLHEITPEKVREDAEVLQKT
YSNDLATCFANECVQFQGHMKNIEVKLTTTQMLQFIREHDITSVYPYVEVALRIFLCTPSTNCSAERSFSTLKRIKNYLR
STMAQDRCSALAVLAIEAEITTSLDFEKIINDFATSESRKKKF
>hAT3_SB_tp#DNA/hAT-Tip100 591-3101 [Sorghum bicolor]
MKKSNIAVLFQKHEKKKIATQTAPPIPVIHEELSIPIVEDPLIASVESGILPVDEGTETPTATSTTTLPTTDEVEEEIEA
VEVEPPLVAAADVDSLEHDPGLRRSISIFDVNEQDSIRRRYILKGPCHLYAYVYPFRKIYGKDRRFSFLWFQKYPWIEYS
VEKDAAYCFXCYLFGKGSGKFITEGWNNWNVGAIALDKHQNSTLHKFAQEKYSLFVQNGTKIDTVIVKVSEKDRADYKAR
LTYSLRCLRFLLNQGLAFRGHDETEQSVNRGNFLELLNWLAGNNEEVNKVVLKNAPGNCTLTSPRIQKQIIRCCSEETTR
SILEXLGDDYYAILADECSDISHKEQLAVCLRYVDKRGSVCERFLGIVHVPGTTSSELKAAIQSLLASHHLTLSSCRGQG
YDGASNMKGEVKGLKTLIMKESPSAYYVHCFAHQLQLVLVAVAKGDVGASTFFANVSRLLNIVGVSCKRHDMLRDVRARK
LKKALELGEIESGSGLNQEMGLARPGDTRWGSHYRTVLHIIDMYSTIREVLITLGNDPTQRDDWPNIHAMVLILESFEFV
FNAHLMLVILGYTNELSQSLQKRDQDIVNAMTLVGVAKIRFQQLRSNGWEDFLEKVKSFCIKFSIDIPAMDSKYEPHGRS
HRFYPVQTIDDHYRREVYIGIIDRIHQELENRFDEVSRELLICMAALNPSNSFASFDAKKILKLATYYPKDFSSSDLRTL
EIQLGTYIEDVKMDDRFQGLTTLGELSTKLVGTNKHEYYGLVYLVLKLVLILPVATASVERVFSALCLVKNKVRNSMSDR
LLNDCLVTFIERDIFSSVSEDDIIHAFMAMRKRKLK
>Arthur1_Nvi#DNA/hAT-Tip100 ref|XP_001602369.1| [Nasonia vitripennis]
MNRVYESGAAKKRKAKEEQKKIDKLPKITGFLKQDDITSKNDETPKGTADLQENVIQNESVDLNPSEQSELSVATQVLIN
HRTEEEAALRSTSEKNESYSTDIALWGEINEKLRLYWLQKNPGLCSNKDKDFSKSARIYQEGDKQKVRTLNKSLFQLKLQ
NNEIVEREWLSYSPSTGRIYCFVCRLFSSEKDQFTFYGFNDWKHPERITEHEQSKAHKQTLTIYSKRRRETGSLENALTI
QQKNEKNYWIQVLRRITDTIKFLASRGLAFRGENERFGSSQNGNYLGILELLSEYDPFLKEHINTYGNKGHGVTSYLSAN
ICEEFIGLMGEKVLACIISELKKAKYYSFSVDSTPDITHLDQLTFTVRYVTDQGPIERFLMFVPIEGHNAEYLTEVVVKF
FKDNDIDINDCRGQSYDNASNMSGRYSGLQTRIREINKYADYIPCAGHSLNLVGVKAAECVNAVVKYFYIVQNLYTFLSG
STYRWQKTIVIFRNEKKSHTDITKALDDLSKDDTQSNETRLEAKTILKQITKFENVFITVVWHEILTRINDTSKNLQKEN
MDLYIACSLLNSLELYLLDIRDKFDEFLEKAKSFTDICESESTSEPRNRRRSVKLTRFEGESEHTQFTGDEKLKIEIFYP
IIDSLCSNLKTRKTAYETVNDNFKFFTALPNMTYEGIKECCEKLARKYDQDISAENLISECLHYKHYLRDTRKNEELFIP
DLYLQLKKEFLTSTFPNIEISLRIFLTLMITNCAGERSFSRLKLIKSDHRSTMSQSRLNHLSLMSIESDLLKSIDFDELI
SNFAAKKSRKKVF
>47209746_Tni#DNA/hAT-Tip100 gi|47209746|emb|CAF93945.1| unnamed protein product [Tetraodon nigroviridis]
YVTKSEMKEVLRVCENAVREGILMEVGTSFFSLFIDCVVKFEEKDFLPLFLRFVDSFDVMRLELMGFLDADLSCDDMVQS
LLDIVTVKWHLDLKNCRGQAYLGSGDVSYKLKAFACKVQEKYPLAISTQCSCYSFNTWWSKSIPVSAIKRALDIFEEVLM
FFGSTVTLQKQLDQIIAFGLRESYEKVQEFQGTFCTLWQEKHDSYEVFVQMLEPLVENLEKIKKNPQRWTSIVSEQAGGL
LLKVMQFDFIIAMVILKNVSSFTRELSAGLQKDHLSAASQLCQISGIVATLNRVKTTIKVFHQNWFDEASAVAQSLGVQI
ELPESSMPRDGMIKPLSFYKDSISVPLVDNLISAVKDHFSEDHKEALNFLSLVPCSVTVSYMFESLKSKPPLYSSDLPDA
DNFFTELCCWRVTWKTKVASVTIPATIFNTLRLPIMQYFGNINTLLRIMSVLPSTALEDCGVILRYMKFQEYLRNTNSKD
RSPCLAMLEVSTDFSRDLEHMVTQCLKIT
>13259368_Nha#DNA/hAT-Restless gi|13259368|gb|AAK16925.1|AF315315_4 restless-like transposase [Nectria haematococca]
MSILSDSDAITAIDDNGNFRSSPAPSTAFTPFSPARRSKSTSPDSTTKERQYEESLWRHFPGFTWSQRVRDTNSWAWEYG
YDIQKGNDRKWVCKICIHKNTLKPKTFTSTGIQNTLNHLYDDHRICAPEGKTKSASQLRAEGRKAKGQSTIAELMKLDTN
KPREQAIANGFIKNFDKKFFQRLLMEWIVEANLSFETAEHDKLRKIFAYLNPCVKLSDANLSATSIRRKIVASYEQHKTK
VMEVLQSSPGLIHVSFDGWRSGNRHALYGIMCFFQDEKNKPRKIVLGVPEVSTRHSGTNIAAEVLEIIDSYGIKNKIGYF
TLDNAENNDSAMAVIGGELGFVGRKRRGRCFGHILNLSAKALLFGSNPEAFENQLSGAAALSETKHDLWRRRGPVGKLHN
LVVDIDRSNVLTYLLRGVQQADMDQSIDPRVRARKPLNIVVDNDTRWLSQLYMIRRAIKLRPYLDVMILKHKQA
>Hobo_tp#DNA/hAT-hobo gi|157608|gb|AAA51465.1| (one frameshift in RepBase hobo sequence) [Drosophila simulans]
MAPYIMIVEFLCLWSSVSAVNCPFFVFYDAITSLLGFSIIWKPKEKVTIMAEAADFVKNKINNGTYSVANKHKGKSVIWS
ILCDILKEDETVLDGWLFCRQCQKVLKFLHKNTSNLSRHKCCLTLRRPTELKIVSENDKKVAIEKCTQWVVQDCRPFSAV
TGAGFKNLVKFFLQIGAIYGEQVDVDDLLPDPTTLSRKAKSDAEEKRSLISSEIKKAVDSGRASATVDMWTDQYVQRNFL
GITFHYEKEFKLCDMILGLKSMNFQKSTAENILMKIKGLFSEFNVENIDNVKFVTDRGANIKKALEGNTRLNCSSHLLSN
VLEKSFNEANELKKIVKSCKKIVKYCKKSNLQHTLETTLKSACPTRWNSNYKMMKSILDNWRSVDKILGEADIHVDFNKS
SLKVVVDILGDFERIFKKLQTSSSPSICFVLPSISKILELCEPNILDLSAAALLKERILENIRKIWMANLSIWHKAAFFL
YPPAAHLQEEDILEIKVFCISQIQVPISYTLSLESTETPRTPETPETPESLESPNLFPKKNKTISSENEFFFPKLVTESN
SNFNESPLDEIERYIRQRVPLSQNFEVIEWWKNNANLYPQLSKLALKLLSIPASSAAAERVFSLAGNIITEKRNRLCPKS
VDSLLFLHSYYKNLNNSQ
>hAT-1_SBi_tp#DNA/hAT-Tag1 501-3294 via tfasty with ZhAT12_ZM, 2 frameshifts and 5 stopcodons. [Sorghum bicolor]
MPVPDLEEVQPQPESVGSGAATAASASSAIDIPSLIERAIAKLPPDLAAQAVDKKRKARSQDPGWQYGWWPDPSKKDFVQ
CIFCKKVVPSGISRFKQHLAGGFGDAIGCPQSPELVKREMVAYINKNSRTVVVAAADEDGEVEEEDVPAAEEDVAAAAVP
VPSSGTKGKQAKKKIAQAPITTFTVTAAAKPATQKQSRPVSSMLCKSPEEVVSERYKSKLTQPTLEHCTKRSKEAKQIVD
DHVADFFYENRLPLNVINSRSWEVLLESIGQYGPGYRSPSYHEIRNPLLEKAVNRTSELRKKHEQAWKEYGCSIMSDGWT
DTSHRHLINFLANSPAGTFFLGSVDASSEIANAPMLADLLEKQIDKVGKEHVVQLVTDNGANFKLAGRLLMERIPHLFWT
PCAAHCLDLLLEDIGKIKEFSTCINMAKKVTRFVYKHGRVLDLMRDKIGGDLVRPGVTRFATSFLTLASMHRHKNALRSL
VVCDEWHNLSFSATQEGRRVENIILSAPFWSKVELCLKASQPLLIALRIADGDETPAAPEIMAAMEVAKATIKESLKGKP
TLLNEVLKYYDNRWENQMEQDLYGAALYLNPNKFFAIKEKDRRQAHRLRIMFNKVLWKMVSEEEEQNKISMQADDYERAE
GESFSMPMAIRDRERKNPSKxSFLILMYYYLxKQSAMNxxYGMEIVVLWWGAYGGLTYELQCLAKRIVSLCCSASGCERN
WSEFSAVSATVLASNxVLLYCCCKQYWYVNMHCLLCRIHTKKRNRLEHQRLNKLVYVSYNRKMENRFRKIRELGSKGKRS
NPLLLEEFQWENEWVNDNCEVAQEGGGSGNDITWAQVDEAVGATQSLQGRGLPRAAAARVVGQTTQTYVRHRKRARNTVT
QDIEEDDDELQEDNAELDSATVVEEDEGSAPGGGGGDEDGHGGFDLVNDLLD
>25518174_Ath#DNA/hAT-Tip100 gi|25518174|pir||B86472 hypothetical protein T32G9.31 -  [Arabidopsis thaliana]
MLDNKKREHMPTLAPPSRCLITTIMWTVWMTNEVDENEFDNKDQDEVVHEEKKSGQKEELPSNISDPVNWDDMNMRFRDL
LVEKGLATRHDKKGGYLATSGYNDWRNLSKRLKEHKGSHDHITCMTRRAELESRLQKNKTIDKHAQEAINKDNIHWREVL
LRIIALVKTHAKNNLAFRGKNEKVGQDRNGNFLSFIEMIAEFDVVMREHIRRIGAAEIYSHYLSHKIQNELIGILTGEIR
LMIMKTIHASKYCSIILDCTPDISHKEQMTMIIRCVNISSTLTKVEEFYLTFLEVKDKSSEGLFSKIKEALVDMELEIDD
VRGQESETHGIGVFEILFGMILWYDLLAVVNRVSKTLQSADIDIDVAIIELKGLDMDIEAEFLVKKKRTIRRKKHFDEVS
EKGDENMDLSPEEDFRINYFFTLIDQALKLTSASDESLMASCVHLESSLKHGEHSDIDG
>hAT-9_SBi_tp#DNA/hAT-Tag1 777-3057 via genewise with VIHAT1_tp, 1 intron (2366:2441) [Sorghum bicolor]
MASPNLSGASASGTGSVGSAATQPTDIKAPLWDHVIILEKPKAGGGNAMWRCKYCPMQKLSSYTRVEAHLLQISGKGIGK
CPNVTYEMLSAMRKEIERCKNLVEKSRSRMVSLPTAPSSSNTDDTNKRSKRGPTSALEKAWRAEDRNHLDALISRAIYSG
GVSFNFLRNPYLREAFAFASSRNMQGYVMPGYNRVREGLLKQERRHIERLLESTKSTWSEKGVTICTDGWSDPQRRPIIN
FVAVCDKSPMFLRADNCEGEIKSKEYIAEKLRAIIEEVGRDNVVQIITDNAANCKGAGLIIEAEYNNIFWTPCVVHTLNL
ALKSICEPKIGNNPSDDDKFVWEQLEFIHDVKTEAAMIKNFIMNHGMRLSMFNEFSRLKLLSIAETRFASVVCMLKRFVE
VKSALQQMVISDKWSIYKEVRDDSPTPTAQIVKDLILNDVWWDKVNYILRITTPIYEMIRMTDTDTPCLHLVYEMWDSMI
EKVKKEIYRYEGKQEDEDSDLYSVIYDILIARWTKGNNPLHCLAHSLNPRYYSKKWLEEGVGREPPHKDKEVSKMRMVCF
KKFFPNPEDLAKVKEEYAKFSSCSEEFNDPDSIHDRWAVSPMTWWTNHGQAAPMLMSLAMKLLSQPASSSCCERNWSTYS
FIHSVKRNALTPERAEDLVFVHTNLRHLSRRSDAYKTGETRMWDVGGDSFDSLGGIGILEVADLSLDEPELQAMTFGLDA
EHEQHDVVDDNGTTE
>P2_AG_tp#DNA/P 1171-3231 wised with 31226952_Aga. One intronlet. Can be an upstream exon as well. [Anopheles genus]
TLSGNQIDLILKRKKRVRWTKKELGAALTLRYFGKRPYMYMTDDMHFPLPARATIQRYIKSINIKQGILEDVLNLMESYA
KTLIPRDRECVISFDEMKVTHILEYDVGADEVLGPHNYLQVVMARGIFNKWKQPIFIGFDQKMTKDIILSLIKKLSERMI
NVVAIVSDNCQTNISCWRDLGAHDITKPYFNHPITNKNVYVFPDAPHLIKLLRNWLIDTGFDYKGSIITADPLRKLVEER
KDAEITPLFKLNENHLTMSPQERQNVRRAVQLLSHTTATALRRYQSDDASQTLAEFIETVDCWFSISNSYSPWAKIAYKR
SYAGKEEQEKSLDKMYELISNMTALNRTSMQTFQKSILMHITSLKMLYKDMXKKHQVDFISTHKLNQDILENFFSQLRQK
GGVYDHPSPLSCLHRIRMIVIGKSPTILINQTNLETNRNTRLGENICLMEQHENANEDCLSEQNQDFMSVTLFTEADVIP
DLPDNALNAHEMDDESEILSTISSTIPDLPEQDRDGFXYIMGYLGKKFHKKHPHIDQGTYSFKITSDHNYSKPPSFVKHL
STGGLFVPSHSFLKLGSKMEKIFQKLHPDGTLDKKPGIVKTGVNTIKKKIPSLPVDMIKCFMMLRVKLRIKHTNLKAANE
KLLRCKRKGPKEHKAAKKMKKIVN
>CR1-6_AMi_pol#LINE/CR1 1436-4378 CR1-17_Gav_pol very similar.[Crocodylidae]
LGSSGEGEDEDGGSHGTPNQETPTRTAQPRQATSTRNTQVRDRGPDSPGIRGAVHTPSGGLKCLYTNARSMGNKQEELAL
LLANTNPDIVGLTETWWDPTHDWAVNIKGYRLYRRDRTGRKGGGVALYVKEQYTSSANSTGSEEGQTEVLWVRIQGGRGE
RDLTVGVYYRPPNQGEELDREFSGQLAEAVKSRDVVIMGDLNYPDICWEEQSARSDRSRRFLAELQDLHLTQEVHSPTRG
NALLDLVLATGDDLVRGLRVLDHLGDSDHRLLEFTIQRRVSKACSKAAALDFRRADFNEVRRLVREALRSRRGGELGVQE
EWSFLKETILQAQRVTIPTRIKGGKSAQKPPWLTKSIQERLKAKKEAYTQWKGGAITKEDYTSIARDCRGAVRKAKAEME
LGLATRIKDNKKSFFKYIGGKKKVPGNVGPLQDTLGNLVVAPDDKANLFNNFFASIFLSRDRXIPPTGIPDGPRGGAARP
RVSEDLVRELLVGLDVFKSAGPDDLHPRVLRELAEVIAGPLARLYEHSWCSGEVPEDWKRANVVPIFKKGRKEDPGNYRP
VSLTSVLGKLFEKIIQEHICEGPAGEIMLRGNQHGFIRGRSCQTNLVAFYDQVTKSLDAGVAVDVVFLDFRKAFDTVSHP
ILIKKLGDCGVDAYTVRWVANWLEGRTQRVVVDGSFSTWRDVGSGVPQGSVLGPALFNIFISDLDEGVKSTLFKFADDTK
MWGEVGTLEERDRLQLDLDRLQGWADENRMGFNTDKCKVLHLGRKNQQHTYRLGNSLLVSTEAEKDLGVIIDSKMNMGRQ
CGDAVRKANRTLSCIHRCITSRSKEVILPLYATLVRPQLEYCVQFWAPHFRRDVDSIERVQRRATRMIRGQQGRPYEERL
RDLNLFSLHKRRLRGDLVAVYKLAKGDQQAMGESLFPRALPGVTRNNGHKLTESRFRLDIRRHYFTVRAARIWNQLPREV
VLAPTLGVFKRRLDDHLAGVV
>CR1-5_DT_gag#LINE/CR1 539-1572 via tfasty with CR1-4_DEl_gag, 1 frameshift. [Drosophila takahashii]
MTIICTAKKCEYNNIISGETFLICWLCDNCAHVKCAGAGFNGRIGDLISKKVGFTWSCTACREMTDEMRTFMRQTRTGFM
EVRKLLTSMNDKFLAVESQFLGLKILSESPKRKIPNNLQLPANGLTTTMLSTPTGANNMEHSPNYLTPSLPPAHTTPSGS
SDNLPMQSHAALPAASPGNIPPVQNLATPGLQLVPGDSVSASCAVSSINDLPSPRRLGPGRSNIPLSGVPSRADQRKSVG
TPAVSGIPLSGVIQKSIFVSRLNPEATAEDVRIYLCEKLLAPDNAISVYKFNFKHKRNISSFKILLADHLFPKALDSTIW
PVNTLVHEYLQKDKTRGSSTAASKN
>CR1-6_NVi_gag#LINE/CR1 91-570 Fragment, via tfasty with CR1-3_NVi_gag, 2 frameshifts. [Nasonia vitripennis]
MDVNPYNNVSQSLDCGAFSAELHDRTYRSFNVLMYNVLARKQQLLGAITGLNVDEISGRRFPRTSRNSSFPVRFGSSDDA
SRVLKNRKLLPSSVEATADHTAYQRDLYRKLKLKASLHNTSHPDSLKKVVYVKGTPTLVDLRRTSTAPLSEKPSKNLQAS
>CR1-8_CQ_pol#LINE/CR1 2047-5163 [Culex quinquefasciatus] 
RPSSYTIDRSLSRSRCPTKCSTEHTKYQSTTLPRPDSFSIGLPLAASSVATIPDTIPDDTAVPVVPKPTERVKVPPALET
NLLLFYQNIGGLNTTIAQHSLAISDASYDMYAFTETWLTADTLSSQLFGPEYEVFRSDRTSVNSDKMSGGGVLLAIRSAL
KPRQLFPPNCSIPEQVWVNVPLATSTLFICVVYIPPKRDNDRPLIEQHRDSLAWVTSMMKINDSVMIIGDFNFPALRWTR
SPTNKLIPNLAXTPTNQLKLDVLDDYSVANLKQLNDIPNISNNVLDLCFVSSDTPTCCSLLPAPQPLVKIDRFHSPLLVS
ISCKTHAFRASSCSFFHDFNNADFAGMCVYLNNINWNDLLHNLDANGAAETLMNILRQAIDTFVPRKERQPARYPPWTNE
RLRILKTAKRAALRKYSKHPTDRWRNFFWAASNRYSHLNNRLYHQHLHSIQNRLKRDPKKFWNHVNEQRKESGLPTVMVR
DDTEATNPEDICDLFRSQFSSVFNDEIVDDAIISKAANNVPVRPPIGQHPFVNPDAVRRACLRLKGSTSCGPDGVPALVL
KKCGDSLAAPLSLLFNLSLRTGVFPSCWKKSFVFPVHKKGPKRDVRNYRGIAALCATSKLFEQIVLDFIKFQCSSYIAQE
QHGFMAKRSTSSNLVAYTSFILRTMQHRKQIDALYTDLSAAFDKLNHRIAVAKLERLGFGGSLLDWLRSYLAGRTMCVKI
GDVVSAAFAVFSGVPQGSHLGPFIFLLYMNDVHLLLKCHKLSYADDIKLYAVIETRSDALFLQDQLNIFANWCMDNRMLL
NASKCAVITFTRKRSAIAFDYKLTNTLLSRTSCVKDLGVMLDSKLTFSDHLAYTTAKASKTLGFIFRIAKKFRQISCLKA
LYCSLVRSTLEYCSVVWSPFYQNSIQRIESVQRKFVRYAQRHVLWADPLNPPCYVERCKMLQLDLLSTRRDVAKVTFVTD
LLQSSIDCPSVLELIDFNIRRRTLRTHYFLRVPRALTNYGHHEPLSSMCRIFNSCSDFFDFSLPRNTIKNRVLNHLRNL
>CR1-7_CQ_pol#LINE/CR1 36-3185  [Culex quinquefasciatus]
LAVGVRSGQTSGASYRAVPDDRRAAAVGSRADPDADGACTTDRFTCQPTNXGRCRNGDYRVETAATSNSPQIAASTQPTH
SVLLPRRQRRPNRKLVPSSLLVYYQNAGGIRTKTNQFNLALASSDYHVIAVSETWLRDGILDSELSSNYQFFRKDRSPAT
SELRRGGGCLVAVKNGLDATLVKLAGYDHLEQTIIRVKVRRQNVFLCCIYIRPNSPNDIYLSHYAAVREVLSKAGVNDLV
IVVGDYNLPGLRWTFDDDVNAFIPNNASTEIELDLMESLLTSGMQQVCNLSNARGNILDLAFVNDADRVDLIEPPSAILK
PDRHHKQFVLKVDLHHNPDQVSQHSADVADFDFNRCDHVAVTDALNQIDWDNVLNSEDANTQASQFYSVVFDVIQQLVPR
KRIARDRSIKQPWWNAELRHKRNILRKARKRLFRSKSPEDNVCVERLETEYELLNETLYREYLDNIQTRLTDDPSSFWSY
VKSRKRTDGIPSVVDSGDRSSNSPEEAANLFADFFKGVFNHGLHTAPADYLDEIPSHNIDMPFPVLSEAEVLEALAAVDS
SKGPGPDKLPPSFIKMCAGSLAHPVSLVFNRSLTNGQFPDVWKVAAITPIHKSGRRKDVQNYRPISILSCLPKVLEQLIH
KRMYAAAVPIISEFQHGFVKKRSTVSNLMLYVSSINSSLEKRCQVDSVYVDFAKAFDKVPHNLAIEKLRRMGFPRWLTVW
LSSYLTGRTGFVRIGSSRSLQFAVTSGVPQGSHLGPLIFLLFVNDICTHLKSQKLLYADDLKVFRVVSSAIDCVALQQDI
CAINEWCVRNGMKVNEEKCNVISFSKKQDTIHYRYEMNSHLLTRVDCIKDLGVMMDHKLTFDKHVAVTSAKAFATLGFLR
RNTVDFENIRALKTLYISLVRSILEYAVQVWAPHYAVLCDRLEKVQKSFTLYALRRLPWRNPAYLTSYDDRRRLLQLESL
EHRRIFLQRLFVFDVLTNRVDCPEIRQKMSLHEPQRALRTYLPFRIARHTTVYGQNHPIDRCCRYFNPVWCFFNFDMTKE
LFKTKIRNVL
>CR1-4_TCa_gag#LINE/CR1 360-1100 [Tribolium castaneum]
MAEFNCCHCFKSVSRDTPIVVCDGCSLNIHCRCLKISENEIAFISQSRSPNIKLFCNRCNVTITAISEIKKLVNDIKTSF
DERLSELESLIINNNTSQAINREEIIAESVDRSARACNVIMYNVKPVANKQDVDVVNDVLEVIDPSLVIGPENVFRVGKT
VGDKPRLLKLQFKTQQMARLCLKKKSSLLQHPQFAHITISDDKTPGQLKHLNNLRDELKRRLDVGEKDLTIKYVNHVPKI
ISHQKN
>CR1-2B_Crp_gag#LINE/CR1 313-1572[Crocodylidae]
MCRAQTERANRRALKGRAGICAGVRARRACSRSQEGVSSKRERKTHSSTDMVRTQGAAARDRAPVVRTRRVAAGDPAPVV
PPTLGSSEASTQMEPMVGPAAPCPPVCGGCLVGTQRPRVGEGSGGSLACPSCAQLRALEEQVRELQAEVSRLRGIRAVED
EIDTYFHSLQDQSSSRQTSREGCTAEEWQKVTTRTRAARASMVAAPQVQLGNRFEALAALEEKVKVDASGGDGATLHTAR
SEQGRNTTRKKRRVLVIGDSILRGMEGPICRPDPMAREVCCLPGAQIQDVTGMIPDLIRPSDQYPMVLIHVGTNDAAGSS
PDHIMKDYEALGAKLKETGAQVVFSSILPVSRRGRRHEACIGVVNQRLRSWCYQAGLGFLDNDPHFHAGGMLGWDGLHLS
PKGKRVFSSRLADLIRRALN
>CR1-2_DAn_pol#LINE/CR1 1525-4362  [Drosophila ananassae]
MSSLTLTYQNTRGLRSKLPKLYSDSSSFASHIIVFTETWLKPEILSSEVFPSRYTTFRCDRTLRRGGGVLISVDSKFASE
EVKSQEFGDIEFLCIKITLSDQSLYVTCSYIPPSSEPPTYWQHLSAIRLVFDRLSDGDQLIALGDFNIPELMWSNVDNSP
SLQLNSHHDFPEGMFDMSLGQINHVRNSLGRLLDLCFVSDPDGITLSRTLPLSNPEDPYHPTLEVSIENNYFFDLKSTVK
SQKVRFFRKADFMKLNKLILEFDWSDLLACEDINIALQKFYYTLNIFFDACVPWKYPSASTNPPWYXRHLINLKNSMSRL
LNKHRLSGCTVSYSRYLVARSNFTVHNAECYRSYIRRCRIQFTQDPKQFYNFVNTKRKHVSFPPLLTFENSYANTDQAMA
DLFAQFFQTTYSPSSSLAQPYTYNIQSANLIFCPSFDQSGVLSDLLKVKPVYSPGPDGVPGCVLKYCAEALCKPLVKLFN
LSLETSIFPLMWKESFIIPLHKKGKKSDAANYRGISKLSAIPKLFEKLITPHLQHLCSSIITPCQHGFMKRRSTTTNLLE
LTSFITDGFRNGLQTDVIYTDFSKAFDSVNHSLLISKLSLLGFPTDLLMWISSYLSGRTQRVFFKDVTSRVVRATSGVPQ
GSHLGPLLFTLFINDLPLALTNSLVLMYADDVKLCLQYKFTSAQSRLQSDLDKLQNWCLANNLKLNGSKCKLMSFYRSSP
HQAMYFLYGNALERLTQVNDLGVLLDLKLKFTDHVSTMVNKAMGVLGFIKRWSKEFNDPYITKTLYTSLVRPILEYGSCV
WSPQYGVHQDHIESVQKNFLTFALRGLNWDANLYLPSYHSRLLLINLPTLTNRRTMLGVMFLYNLIYGNIDSQHLLTRLN
FNIPSRRTRNFRPLLLSHCSSTYAQHDPFRVLCSDYNGLYHILSLCSTNNLKSLILTALSMQHSSS
>CR1-3_TCa_gag#LINE/CR1 948-2117 [Tribolium castaneum]
MSVCYKCKSSVVNSIACLNCKKAYHPSCLRAFKNYSAIGQDLTSISACPCCDKLKSLQNPTSPTLNISTNTIFEDLGILK
QETDLIKKTLDDLKTFITESPTTVCTFDKIDEYVRKSFDDLESKLISLLKDTLNREIEKLKNSIKNEVIAEISTNLNRTN
DNIKTANSSDLTLKSTNSKNVSTQSVSKTNRYKVRIFADQKGRHCIDLLETYIPVSKYVIQSVVKPYSSLQELLKTENNN
EQLGNNDFVVIYAGNHEAQKGKIPDENTLNELINHKFLNTNIILIGCPYFVNRPILNNFVYELNCNFYNVAKNNKNIYYL
DSNDKIFDQFKTDNFVINKAVKRCIIKNLGDLITECQDHTNRSAVEQNPVATFLDTSLPSVDKSDSQSF
>CR1-4_DK_pol#LINE/CR1 933-4484  [Drosophila kikkawai]
MIDAAGVDAFVDHTLLAHSPRNHMLGLSPQRSQHLHLSPRLRSSSSFSMLQQQHQPVLLPSLLCDIRLGLALSSTLSTPP
LLQQFWLELLYSSSALRVDAALCLVSPLDLLRLLWMLCAGWARSLDALYGFAHQQQQLMQADVIAAGLQFSAGPALLRNY
IRSFQLASTHLDFMKPIKIGTISLLKAASGLVAHKPHLGSSNCAIDDMVVPPAYPESAHPSSSLVNGDSPSLKIYFQNIS
GMRTKTGAVYLATSSCDYDVIILVETWLNMDFFDNEFFDANLYQVFRKDRDAAKTQCSRGGGVLIAVRRTLMCSSIRLWN
DDSLLDQLCVSLAGPVETILLVVSYIPPCSSFELYKAHVDNIARISQDLEDSQSICVFGDFNLSSLVWVHGVDSPAMIPS
NLHLPQEILVIDDLFSLGLVQINHVFNKLHKLLDLIFVSQDLNLNLVCSSNPISECDAHHQPLLISLFTYIFSPYKPSTS
SLYINMNNLNLIRNDIKLVNWVEVLSHDNLDTCYDNFLITISAIIKKYAKKRLFCSYKLPWYTHGLKKYKNLRNKFYKRY
VENGNSADFDRYKQHKREFEFLNKFLYNQYIADVEMRLINNPKSFWHFVNSKKTTSYIPSHMSLDNSSASSDIEVANLFA
KYFASNFEPLSSWNDDFTLRSIAPSSNIGSLYVTESDCQLAVESLNDSEKFDCDGLSPFILKSCIGVLSEPLHNNLQQIP
LQRCFHSEMEAGYSYSHFQVRRKNIISNYRPIAKLSNISKMFERIVAKQLAFLTGSTISPNQHGFMPGRSTTTNLAVFNH
FCINAFSRQKQVDVVYTDFAKAFDKVCHSALLAKLEKIGFHSSMLNWIRSYLDGRWYRVVCNDHSSSPYIATSGLPQGSA
LGPFLFVLYINDIGQCFKSSEFLLFADDLKIFKSVSSVLDSNMLQDDLARVGDWCSRNKLPLNLSKCFTVTYSKRLNNSL
FPYSIDSCLLACKTEALDLGVMFDAKFLFIDHINYIVPKAYAMYGFIKRNAAQFTDPYTKLSLXFSFVRSKLEYASFIWN
PTGSVHSNRLERIQKKFLCFALNSLNFHEPVPSYSAKCRLVHLSSLHDRRIVASLLVIFDIISCKIDCPALLRCIHFSVP
SRHLRAFEPFFLPICRTNYALNEPIYRALCFYNNLPPNMRLDPSSPRALIKNEFLLYLSTINVS
>CR1-4_CQ_pol#LINE/CR1 581-3658 CR1-9_CQ_pol over 80% identical [Culex quinquefasciatus]
MRASRLPDATTSSPSYRTRSPASRSHQSRPGAGVGVGGGVSQSAPPGKYHPSFPHCTSDGPSPSSKLRIYYQNVRGLRTK
VDAFFLAITECDYDVIVLTETWLAAEILSPQLFGSNYRVFRNDRNERNSVKRSGGGVLIAVASRLDCVSDPTPVCDTLEQ
LWVRLSVGASQRVCIGVFYFPPGMNRNIDLIKSHLDSIGSVISSLDLNDSFIQFGDYNQPGLKWIPSEEGGLEIDPVLSS
MPLASSYLIDGFNLHGLTQLNSCINVYNNCLDLVLVNDVVLPKCAVFEAVEPLVPLDITHPALEMVVDVPAPTVTTEPPS
AIQQPFNFRKANYAAIKEELSYVDWSFLETSSSIDAAVDSFQTVLNNIFAVHVPRRRPSQKPPWSNATLRRLKQLKAAAL
QDFCNHRSPFFQTRFKLASKRYRGCNRTLYRRYVIRTQHDLRKNPKNFWSFVNSKRKTDGLPPTLYLNDVAATTPEEKCA
LFAAHFKDAFNSRPASEAEIMAATRNTPANAFECSFTEVGNGQVTAAIDKLKLSYSAGPDGIPSSVIKRCSDVLLLPLSI
LFNLSLCQSTFPAKWKRSFMFPVHKKGAKSSIKNYRGITSLSACSKVFEILINSVLFESCKHYISTDQHGFIPKRSVATN
LAQFVSHCLQEMDAGAQVDAVYTDLKAAFDRVDHGVLLKRLEVLGVSANLIRWLKSYLTDRVMRVRIGNSESDIFTSLSG
VPQGSNLGPLLFILFVNELALLLAGGCRLFYADDVKIFTVVRSVLDCSTLQRQLDRFNEWCLRNFLTISIDKCNAISFHR
KLKPVIFDYAIAGSTLARVTQVRDLGVTLDCKLSFTSHRHDIVSRANRQLGFIFRIAEDFRDVACLRSLYCALVRSILEF
CSVVWCPYQSTWTAKIESVQRKFTRLALRRAHNPAGWSPYEERCRILRLDTLEKRRHISQASFVAKVLAGEIDSPWILAQ
IQVYAPERPLRQRPYLQLARRNTNYGQHEPIRFMCSRFNVFSQLYRPNISTSMFQQRARLWYSSQF
>CR1-8_NV_pol#LINE/CR1 14-3457 [Nematostella vectensis]
MAATGLWAPLLFLLFGTLSMSKLNSSTQNSNLNTWGINQTNCMPMKLLDIAPLLRNEVGYGELNRAKKLRITYRFGRTGP
SHLVMLLLILGGDVELNPGDKCGICSKSIKMNQAGIQCDQCDFWFHADTCCNISPAMFSILANSSCTWICPQCGLPNLSD
SFFDSTMDSLISSNYFEPLSQDGSAISQITNQVKVQTRSKMKPVKRRNLTCLVVNCRSVKNKIADIAVVINEHQPDIVFG
NESWLKPDISSAEVFPENYKILRKDRDNNRGGGVFQAVKNDLIITHRPDWDSDCEIIWSQCQLAGTRSAKSIYFGSYYRP
NKSDIESLDELNSSLLKMGTTLHKNNVILAGDFNAPDIDWVNPENPDKLTSASKRLLDITDDHDLNQFVKEPTRRNGNTQ
NILDLVLSNNKDIIRGVKVIDGISDHDIVLFTVKLACQRKRNVKRKVYIKKKADSDRIKQELHNLLPTILELNSNTNSVD
KMWDEFERNIHRIMDTCIPHKTTSSRYNLPWFNRALRRQVRAKQRLYNKAKKSGNPTHWNEFRIARKRLQKNLKSARETY
ISDFLGDAIEENPKRFWSYIKQLKNDDPGVADFKVDDRIISDGQLKSELLSKQFCSVFTVEDLTDIPSVGTDPKQNISAL
TITIPGVVKQLQSLKPNKASGPDEIPPWFLKEYALEIGPILTSIYQTSIDTGLVPSRWKHANVCGVYKNGEKSDPANYRP
ISLTCIASKVLEHIIHSHVMKHLQHYGILTDVQHGFRAKRSTVTQLILTIHDMAKAIQENKSIHAAVLDFSKAFDKVPHE
RLIKKLQYYGIHGPLLYWFMSFLRNRTQTVVCDGKRSCPSLVTSGVPQGTVLGPLLFLLYVNDLPDNLKSSIRLFADDAL
LYGVIVNEEDGDQLQEDLKRLEMWQSKWQMVFNPSKCKTICISNKKIPPQRSYVFCGVHLEQVQSITYLGVILNDDLKWS
KHVKSTSGKASKVMGMIKRNFWNCPQRVKVTAYTAIVRPMLEYASAAWDPHLQKDIASLEKVQRKAARFCLRNYIPTASV
TEMLGDLQWSTLELRRTMARLTLLYKLSRGQIDIDTSMYLRPHQDLRTRNSHNFKYYQEKATKNKYFYSFFPRTIRHWNT
LPNELVELGSIEHFKRDLEIYLNNNKN
>CR1-19_BF_pol#LINE/CR1 1-3261  [Branchiostoma floridae]
MAPPSHPSDSYLMSLRTFSFVFTALLAISMSSNDSSSAPCGICDLPVTWSDRGVECETCGTWFHASCQHIGSDTYLNITL
DTTWRCVICANANYSSTLFDLHGVEQEYSRNLSSSSLPDSESGFKPLHSSTPTRNSQHGRQLNRPLRMLNVNFQSASGKP
AEIANMLHSTKPDVVFGTETWLYPDIKTTEFFPDGFNVYRKDRTGKIGGGVLIAVRDHLQCTEVPELDPGGEILWLKLLI
RNQRPLYLCVFYRPSSSDKAALEKLDMALRRASAMKNAQLIIAGDFNFPSWNWEAMTLKPNPVYTTLHQQFVDLLYDTGL
DQIVQDPTRGENTLDLVLTNSPSLIPRVEVIPGISDHSIVYFEYKTKPEVLQNANRPILLYGRANWEVMKQDMETLQQSF
TDSEHMSTEELWQKFKLALKVSMAKHIPTKKPRRKESLPWMTSGIHHLIRKRDRLYRKMKKSGSLDMRKEVKNLNREIRK
QMRRSYWRYTEHLFSPTSSEESSRPSLKRFWTYMKHQRSTTTGVPALKSNGKLVIDPKQKAELLNKQFYTAFSEGATYTA
SEFKDRCPMPDSRNDFPSMDNITISTKGIEKLLTRLNPTKAAGPDGITPRVLKELATELSPILTTIYKSSLHTGQVPKDW
KEALVTPVFKKGEHYKASNYRPISLTSVPAKILEHVLVSAIMHHLESNNILSTQQHGFRKHHSCETQLLEFVEEASSAME
SGVATDVIIMDFQKAFDRVNHSLLVHKLDHYGIRGRTNSWIANFLSDRKQAVVVNGAQSSYVDVRSGVPQGTVLGPCLFL
TYINDLPERISSPSRLFADDTAVYRLITCLEDSSKLQEDLGKLEDWESEWDMAFHPDKCSQLPLTRARKPPNAHTSYKLH
NHTLERVPSAKYLGVTLQADLSWGKHIDNTYSKANRTLGFLRRNLRVCSSKTKELAYKALVRPVVEYASSVWDPHTNRDI
SKIEKIQRRAARFVLNRHRNTSSVSDMLEQLQWPSLQDRRRTSRLAMLYKILNGLAHVRCKTLKPLPSSNRCRRGHSLQL
QHIPCRTNYRLNSFLPRTVREWNNLSEETVQSPSLARFILKVSSAS
>CR1-18_Crp_pol#LINE/CR1 1497-4408 via tfasty with CR1-9C_AMi_pol, 1 frameshift. [Crocodylidae]
LGSSGDGEAEDKENLGSASHEQCTGSAQVSTKGPDRHQDRGVPRAPIGGLKCLYTNARSMGNKQEELALLLASNNFDLVG
LTETWWDPTHDWAVGIEGYRLYRRDRVGKKWGGGVALYVKEQYTSSIIKMGSEEGQTEVLWVRIQGGRGERDLVVGVYYR
PPHQEDELDLEFSRQLSEAVRSRDMVVMGDLNYPDICWEEQSAKSNRSRRFLTCIQDLHLTQEVYNPTRGNALLDLVLAT
GDDLVGNLQVQGNLGDSDHRLIEFTIRRRVGKLTSRAEVLDFRKANFSVLRRLVSEALKLKSIGEMGVQEGWSFLKGAIL
RAQKETIPLRIKGGKGAKKPSWLNREVQESLRAKKEVYRLWKQGVATKEEYTSLARTCRESVRKAKAGLELRLATKIKDN
KKSFFRYIGSKRKVQGSIGPLQDKLGQLVTERGDKAELFNEFFASVFLDTDQDKSPNWIIDRHRRDTSPPTVSADLVKGH
LEGLDVFKSAGPDELHPRVLKELASVIAEPLARLFEHSWCSGQVPEDWKRASVVPIFKKGRREEPGNYRPVSLTSILGKT
LEKIIKDHICGSPAGEIMLKGNQHGFIAGRSCLTNLVSFYDQVTKCLDAGVEVDVIYLDFKKAFDTVSHSVLVNKLTGCD
VDDYTVRWVANWLRGRTQRVVVDGSISTWKDVGSGVPQGSVLGPVLFNVFISDLDEGMESTLSKFADDTKLWGKVNTPEG
RERIQADLDRLEKWAERNRMQFNKDKCKVLHLGKKNHQHTYRLGDDLLSSTAAERDLGVIVDSKMNMSRQCDEVINKANR
TLSCISRCMTNRSREVMLPLYAALVRPQLEYCVQFWAPHFKRDAENLERVQRRATRMVRGLQARPYEERLRDLDLFSLRK
RRLRGDLVAAYKFIRGGQQGIGDALFTRAPPGVTRNNGHKLMESRFRLDIRKNFFTVRVARIWNGLPREVVLSPTLGVFK
RRLDKHLAGVI
>CR1-20_BF_pol#LINE/CR1 1379-4510  [Branchiostoma floridae]
MERSPKETSATQSEELLTQQTDTDSCLNDNNNDERLSIGNISLSSRTLRSVSSSAAPPLHRDDNSKDRKELHKVDSASQI
KVLYMNGRSIKSVNSRRNKLVLFQNLVESNQPSLVAVTETWLTPSIKDDELLPKRYLLYRKDRCTVIPGKIGGGILLAVN
GNILSRRRSDIEPVDEILVCEMLTEKQGKIGIILFYRPPNGDLLAFTNNLQYTLRLADQEYNKVVLLGDLNLPNIDWCSL
IGNSTTENQFCDVLNDFSLTQVNNVTSNSHNHLLDVILTNVPEKCSKVEKVSSDFPTDHTILQFDLNFRTVFRQSNMKRH
VYQYKKCNFDNLRQSLRDTLGSQGFVESDSIDDCWDTWLQCLCGLVENHVPKAKIKNSYSMPWCDGDVYHLRNKKLTAWR
RAKKTNRPAHWHKFRKLRNGLQKLIHYKYKLFLENLGSLVNNNPKKFWTFFKNKTKSHCLPQILKYKHYQGTTPTDKANL
FNKFFFSVFTTPVVNQPLPEISAWRHPFLGNIDFTIKEVLDVLLTLDCTKAIGPDSISPVILREGAHVLAPQLTAIFNKS
IQSGIVPAKWKEANVCPVFKKGSKDSVENYRPISLLSVVSKVMERCIFNRIFPHLQDQIHPLQHGFIKGKSTTTQLLETF
QTVGTTLDHSGQIDIIYLDFSKAFDSIPHHLLVHKLKTFGFHSNLLNWFSDYLSNRRQRVVIEGVSSDWLPVISGVPQGS
ILGPLLFLLYINDLPSTIECPMALYADDSKCYKQISSPADCISLQHDIDNMVEWSVTWMMKFNTSKCNVLTICRSKTPVL
YDYEIEGQVLSSVTEFNDLGVTMSNCLSFKSHIKNITASANSTLGFIKRSVGYHAPANVKKILYITLVRPKLEYCSLIWS
PHTHNLITSLEKVQRRATKYILNNHTTDYRDRLIYCQLLPLSYRRELLDLSFLFKCFLGQYGIDIHQYISFPLTSLRSNS
QAKLQPQKCLTTTFKNYFFQRIVHIWNALPLNIRTLKLSPVVTINTFKKAILAHYLSLTNDRFNSNDVCTWVTHCQCPSC
TPF
>CR1-20_CQ_pol#LINE/CR1 863-4782 [Culex quinquefasciatus]
LTAAVLPSSSRNHPAAVTADPGRTLYRIRDDPRSTGTVAPSLCGIPANCTCHPSRPGPVSGRGNGVIQTENSGKYTSRFD
LLARPDVLPSFSQRSTLSTTGHSSGFSDNQADPGRSFKSDMDGSQSTDTVAPPLCCNQQHCSCRPSRPGPVFGTGNGAIH
TGNSGKYLYLPDDIARPDVLPNFSPRHATTTTAIRDIDAEHADPGRSTYRAMDDSRSTDTVVPPLCCNQQHCSCHPSRPG
PVFGTGNGVIQNLFSGEYSRSADIDACPDVSPSFSQQLSMTSQHGCSSDPPEVHPPVQLIPPNSSLKPLSVYYQNVRGLK
SKIDEFFLACSELEFDIIILIETWLDDSVTFVQLFGDEYHVYAVNRGKKNSVRIVGGGVLIAVRRLLDSSVCKEGMVDIL
EQVFVTVRLAHINLHICAFYLPYEKRLEHNLLEKHINSVTTVCELARSEDIIIAAGDYNQSYLVWRDDGRGYATADLAET
HARLRTERASHETLLDGMAICNLRQIQTVRNANNRILDLIFISDDESLPTVHCVEDPLVPLDSHHPAVWFEIEAVQRVAF
QDDFDPNSLNYRRTDFATMCTNLAAVDWSPVLTCTNVNDAVTQFGIIVRLHLQRLTPRRRPPRKPPWSDAHLKWLKKIRS
AALRQYSHDHCTICRRRYKKACSTYKRYNKLRYRQYVHKTQCDLKRNPKKFWSFVKTKYKENGLPSSMVYGSRVASNSEE
KCTLFAEHFASVFNKPDVQNDIDPACLDAVPSNLVSVDTFDITRSMLRKAIAKLKSSFVAGPDGIPAAVIKRCGSMLEVP
LLKIFNMSMTEATFPEEWKKSYMFPVFKKGEKRRVENYRGITSLCSCSKVLELIMCDYLMFNCRNYITFEQHGFVAGRSV
TTNLMEFVTTCFNSMSEGLQVDAVYTDLKAAFDRIDHDIALMKFAKLGFSSRICSWLESYLKGRRLQVKIGSSLSVEFSN
WSGVPQGSNLGPIGFALFYNDAGLSLHGNCKLIYADDLKLFTTIESLADCYVLQSHIDAFAEWCRLNRMTLSIEKCMVIS
FHRKTKRHVFTFDYTLLNQPIQRVDCVKDLGALLDFNLTFRQQQASVIEKANRQLGFMFRATREFDDPACLRTLYYALVR
SHLETSCIIWAPYHQNWIDRIERIQRKFVWFAARNFNWRDPSNLPPYEHRCELLGLMTLENRRKLSKAMFAAKLLTGELD
CPNLLEQLGAAVQARSLRTRSGFLHRTLSTTEYMRHSPFRSMCSIFNDFFDLFEFGESTTSFRTKLTSRLSIRGRRDNAG
ENERPRRSTR
>CR1-20_CQ_gag#LINE/CR1 114-865 via tfasty with CR1-5_CQ_gag, 1 frameshift. [Culex quinquefasciatus]
MGCKQCQKKVSDSERIICQGFCGASFHMICAKVDIPLKDALGQRPNNAFWMCDDCAKLFMNGHFRLIAKGHDEGNSEIAD
AVKTMQNEITKLTSTVIAFTEKVAENSASTTTWPSKRPRDSETPTKVSIPSASRGTKAMTTVPVLASAEQDDLWYIWLSS
FPPSVTEDDIRLMVKECLSVDDDDPIAVKMLVDISTLTSITFKVGVSRDYRESSLDPSNWPEGLAFREFVDMNNRPAPSV
TPMGFSRRRLD
>CR1-14_Crp_gag#LINE/CR1 373-1432 via tfasty with CR1-6F_AMi_gag, 1 frameshift. [Crocodylidae]
MVTTRSAARGPAPVVPPFQGSSEAATQTEPLGGLATTCPPSCGGGWVGSPGVGLRSGDSPACPSCERLQALEGQVAELQA
EVSMLRGIRAAEDEIDMYFRSLQGQESTGETPRAQRPTNRWQQVPVKARAVRTTAVPAPQTPHGNRYAALAPLEEEAEEQ
VPRETEATRPTPLAQKKHTPRRRRRKVLVIGDSILRGTDGPICRSEPWSRQVCCMLGARIRDITETIPKIIKPSDYYPLV
VVHVGTNDASKGKPDNIMEDYKALGHQLKKMGAQVVFSSILPVSGQGRRHEACIDVVNRRLQSWCHEAGFRFFDNDPCFC
KEGMLGWDGLHLSPKGRRIFSSRLADLIRRAL
>CR1-10_DTa_gag#LINE/CR1 638-1649 via tfasty with CR1-4_DAn_gag, 1 frameshift. [Drosophila takahashii]
MTLCCASSCAFNNKITARQPLVCCWICDNLAHPICVELGRSSGQIVDKLKLRVGLNWTCPSCRHIEVDMKSFMRQTHLEF
QALSTGFRELYDKFNAAESHFKNLKMLSVPQCSNSDNCSLPNNNLTVPESAALMRLSPISRKLMDFNRAAPHLSAEDESL
DSDAIPHPSSQTEVRGDLDPGVCDHADAGEREGASADIDHMAAGTSLAAQTVAPVMALLAIPRRPSTVPSSAPVTLAALA
PKKCIFVSRLLASATENDVRHHIVTRLSLTDPSAVGITKFNFKLKRDYSSFKIHVPDGLFSKIICSSFWPENTIVHEYLK
KDNSTVRTSAASRNVST
>CR1-10_CQ_pol#LINE/CR1 3-2105 Fragment. [Culex quinquefasciatus]
RRADFESLSRALRGIEWSSVLDPVDIDLAVDTYTXILGRLIEQFVPKIRKVVSHHLPWQTQELRXLKTQKRAAFKVSNGS
VHLRDYYLRINHSYQRLSRRCFANYQRKMQKKLKTDPKKFWKFVNESRRESGLPTSMRLADXEGDDADKICQLFAKKFAG
VFCAEPITDEEVRAAAENVPRRDELLASIEIDEGTIQAAAAKLKHSCSPGPDGIPSTLLKRCSSSLSAPLLHLFRLSLSS
GKFPVAWKQAYMFPVHKKGDRTNVENYRGISALCATSKLLELVVIDPVFSHCRQDLADEQHGFFPKRSTATNLLCFTESI
INSFDAHSQTDAIYTDLSAAFDKINHRIAVAKLERLGFRGSLLAWFKSYLTGRSLRVRIGDALSDIIDATSGIAQGSHLG
PVVFLFYFNDVNYTVTGPRLVYADDLKLFARIDNSNDAEALQRDLDRFAGWCXVNRMILNPGKCQXITFSRRHFPVTFDY
RINDTSVERVTHVKDLGVILDTQLTFKQHLSYIIAKASRQLGLVIRMTRKFTDIYCLKTLYCSLVRSTLEYCSTVWSPHY
NNAVCRLESIQRRFVRYALRQLPWTNPLXLPPYEQRCRLIDLDTLQLRRDLARAMTSADVLLGRIDCPDLRNQIQLRVPT
RQLRHTPALEVPFRRTNYSANGAINGLKRAFNKVSSVFSLDVSRTTLRFKFVSLLRSLLRM
>CR1-10B_AMi_pol#LINE/CR1 470-3395 via tfasty with CR1-10_AMi_pol, 1 frameshift. [Crocodylidae]
LTLLGDGETPSGACLGTGTQESSHMEDTKITVFENANRTVLPQRLRKSRVSAGGLSCLYTNARSMGNKQEELALLLSSGQ
YDLVGITETWWDSSHDWSVAVEGYTLHRRDRAGRKGRGVALYVREQYTSLEADIGSKDKQLETLWVKLRGGGGERDLTVG
VYYRPPNQGEELDLEFSRELTEAARARDLVVMGDFNYPDIDWEEHSARSDRSRSFLTVIEELFLTQEVQGPTRGTALLDL
VLAKGDDLVCGLNIEGSLGDSDHELIRFTVRRKVDKSTSRIEVLDFKNADFNRLRALVGEAMRDQGRKANGVHEEWSFLK
DTILEAQKKTVPMKRKGSRRAGKPSWLNRDIAVLLKKKKEAYTQWKLGTVLKEDYTTVVRTCREMIRKAKAATEFKLAKG
VKDNKKSFFRYVGSRRKTNGSVGPLLNTSGQLVTDTQEKTELLNAHFASVFHRTKGKDKRDKDHRGHGGNDSLPTVDAEL
VQNQLEKLDIYKSAGPDGLHPRVLMELAEVIAEPLAKLFQKSWHTGEIPEDWKRANIVPIFKKGKREDPGNYRPISLTSI
PGKILEKLIKESMCDTLVEGKILNDSQHGFVAGRSCLTNLISFYEQVSRHLDTGEKVDIIYLDFQKAFDLVSHDILVEKL
EDCGLNCSTVQWVENWLHGRTQRVLMNGSVSSWREVASGVPQGSVLGPVLFNIFINDLDVGVKSSLAKFADDTKLWGSVV
MPEDRLQIQADLDRLESWADRNQMKFNAQKCKVLHLGANNPQHTYRLGGDNLTCTTAERDLGVVIDHRMNMSRQCDAVAS
RANNTLACINRCISCKTKEVILPLYSALVRPQLEYCVQFWAPHFNKDVEKLERVQRRATRMIRDLQDKPYEERLRDLGLF
SLQKRRLRGDLVAAYRYIRGVHQELGEQLFTRAPLGKTRSNGYKLLEGRFRLNSRKNSFTVRVSRLWNKLPPVVVQSPTL
EIFKRRLDSHLAGVT
>CR1-12_BF_pol#LINE/CR1 1-3354  [Branchiostoma floridae]
MAPNSDFKFTPGILNLLSFHKHQKDRPNSPRNPLKSISVSIALLVMLTQSGDVHPNPGPYKPKFPCLLCGKAAKWNQRAV
ACDECHGWYHVDCMSMSTANYNVLAEWICCQCGMPNFSSSLFNNSDFELSNSFESLSSIHSQTNSSCNSCPDGNHINPSN
PGIAKSPLAASSPLKAKAKPSRRKPPKQKLKTCVINFQGIRNKTADLAACLDQHSPDIILGSETHLNDSVGSSELFPPDY
TVIRKDRELGRKGGGVLLAYKNDLIVTHRLDLDTECETVWATLEIQGAKPITIGSCYRSHTYAKDIDFVDKLRASLNKIK
PQGGQVWLGGDLNFPGIDWNNLSVSPSAPYSALSKHFLELTHDFGLEQVVDQPTRLNNTLDLFLTNNSSLVETCSLIPGI
GDHDGIPVITVNVKPKKIKQSPRRVSLWKKADETAIRTELQDYSNNLAKRNIDNCTTEELYNEFVDKIKIVMDKYVPSKT
INNNNFSPWINNKVRKIHKKKQRAYNSYRKNPTTENLTKFRTIRKRAKKTTRQNYRKYVNSICSDSPKKFWSHIKHLKQD
TTGIPSLKQKGKLETDNRNKANILNNQFSSVFTREDEHMPHLPRSSIPTMPDFSINVNGVTKLLKDLNPHKASGPDGLPT
RILKLAAAELAPALTIICQKSLETGQIPSPWLHANISPIFKKGDRTDPANYRPVSLTCVCSKVMEHIVQSQMMDHFDKYS
ILSDKQHGFRKKRSCETQLILTTTDLAHSLDTRSQTDMIITDFAKAFDKVPHDRLLLKLQNYGIRGKVLHWISNFLKNRK
QRVVVGGEHSEWAEVVSGVPQGTVLGPLLFLVYINDLADNLNSNIRLFADDCVIYREINSDRDHTLLQEDINTLDTWQNT
WQMKLHPDKCFVMRYTHKRKPKLYDYKLGSHVLAETNNHKYLGVTLNNQLSWSQHIQYSASKANKTLGFVRRNLYNCPKS
VKTNAYTSLVRPHLEYSSAAWDPYHKEHIAKLESVQKRAARFVTNSYHSYDSVTKLVSDLGWDTLRNRRTANRLTILQKA
RHHKVALPVETHLKPVPRQSRHSNPNSYKALPFHKDCYKHSFFPQTVRDWNSLPYEVTEITDAPKFKEAVLRRLRGH
>CR1-11_CQ_pol#LINE/CR1 3-2402 Fragment [Culex quinquefasciatus]
HSHDGFLYPDPRLQAKSVNITDLLDVYSTATLEQINSFPNENNNTLDLCFVSRQDVAPPIYVAPAPLVKTVPHHQPLILS
LDVLRYPARTVTFEPIRYDYRKADINGIAEILTSIDWTNTLDPDDVNVAVQTFSNILSYAIDRHVPKKAILPPDRIPWQT
NELKKLKSKKRAALKKFSRRRTLPLRDHYLRLNQRYKTLNNHCYNRYRYRIQQKLKSNPKAFWKHFNDQRKESGLPSSMF
LDNETASNPDTICQLFAEKFSRMFINETLSPHEVAAATENVPPCGNVLDRLVLDDQRIMNAAAKLKSTSSVGPDGIPSSI
LKKCIQCLLSPLRLLFQHSLDKGVFPDLWKTAFMFPVYKKGNKRDIDNYRGISALCAVSKLFELAVLDLVFFHCKQQICA
EQHGFMPGRSTTSNLLTFTTYLTKGLASRSQTDVIYTDLSAAFDRLNHDIAIAKLKKLGFSGSLLGWFQSYLSRRTISVK
IGECVSLLFLAYSGVAQGSHLGPLIFLLYFNDSNFVLDGPRLAYADDLKIFRYVNSTDDAELLQQQLDQFADWCATNRMT
LNPQKCSVISFTRKLRPITHNYTLLGTTVPRVECINDLGVLLDAKLTYKNHVAYIVAKASRLLGFIFRATKKFTDVYCLK
SLYCGLVRSTLEYSSVVWNPWYQNSSERIESVQRRFIRFALRLLPWSDPHRLPSYESRCQLIHLDSLAVRRNAARVTAVA
DLLTSRIDCPSLLGELNLQARSRVLRGGAFFRIPLEAANYSAHGSIIGLQRTFNRVASIFDFNVSRDVLKKQFLEFFRCN
>TC1_RP_tp#DNA/TcMar-Tc1 380-1402 (originally FrogPrince_RP) gi|39753972|tpg|DAA01561.1| TPA: transposase 87% identical to Tc1_XL [Rana pipiens]
MPRPKEIQEQLRKKVIEIYQSGKGYKAISKALGIQRTTVRAIIHKWRRHGTVVNLPRSGRPPKITPRAQRRLIQEVTKDP
TTTSKELQASLASVKVSVHASTIRKRLGKNGLHGRVPRRKPLLSKKNIKARLNFSTTHLDDPQDFWDNILWTDETKVELF
GRCVSKYIWRRRNTAFHKKNIIPTVKYGGGSVMVWGCFAASGPGRLAVIKGTMNSAVYQEILKENVRPSVRVLKLKRTWV
LQQDNDPKHTSKSTTEWLKKNKMKTLEWPSQSPDLNPIEMLWYDLKKAVHARKPSNVTELGQFCKDEWAKIPPGRCKSLI
ARYRKRLVAVVAAKGGPTSY
>Tc1-9_Xt_tp#DNA/TcMar-Tc1 362-1399 [Xenopus (silurana) tropicalis]
MRSKELSMQVKEAILKLRKQKKPIREIATILGVAKSTVWYILRKKASTGELSNAKRPGRPRKTTVVDDRRIISMVKRNPF
TTANQVNNTLQGVGVSISKSTIKRRLHESKYRGCTARCKPLISLKNRKARLDFAKEHLKKPAQFWKNILWTDETKINLYQ
NDGKKKVWRRRGTAHYPKHTTSSVKHGGGSVMAWACMAASGTGTLVFIDDVTQDRSSRMNSEVFRDILSAQIQLNAVKLI
GRRFMIQMDNDPKHTAKATQEFIKAKKWKILEWPSQSPDLNPIEHAFHLLKTKLRTERPTNKQQLKAAAVKAWQSIKKEE
TQHLVMSMSSRLQAVIASKGFSTKY
>Mariner-9_Crp_1p#DNA/TcMar-Tc2 252-1556[Crocodylidae]
MPPKQMKYDAKFKTRVINFALGTNNSSAARQFGVNEKLVRDWRKNIDNIKKMPHEKCADHRKQCRWPELERDLAKWVNDQ
WQSGRIVTRNIIRLQGKMRAMEKGLKDFTGNPTWCSQFMKRNSLSLRQGTKISQRLPANLKDKITQFQSYVLNLRKKNNY
DLSQIGNMDETPMCFNMPTSRTVDVTGTKSVLLKTTGHEKTNFTVILACMADGTKLKPMVIFKRKTFPKKEKFPAGIVVH
VHPKGWMDEEGVHIWIQRVWNTRPGMLLQPKSMLVWDMFRAHLCSSVKKSLWQSKTDLAVIPRGLTSIVQPLDVCLNKPF
KDRVRIEWQTWMMSGQHSYTKAGNMRAASLATVCQWIITAWRDIKPETVSHSFKKCGISNSMDGEEEDILWCDEDQTEXE
DAKTSDAEDPYDDQISNHSDWEELFGADSSDDDSE
>SMAR24#DNA/TcMar-Tc2 612-2396  [Schmidtea mediterranea]
MSTHKSHHTKKQYSVKEKLGVLDEIKTKSIRATGKAHNIPESNIRKWKQQEKELRALFQNNDIKVRERKRLIGGGKKPQF
ENLEQLLYEFVIDRNKLGLVVKSKYIQIHAKTLRDDYVEDINLTLNEEDLDEDLKKELNLKKTEFQNFKASDSWCANFKK
RFNLVRRTQTGCRKLPENFQEISCDYVAEAREIIIKHKVKPENVLNFDQIPRLFEHEPSNTIAIKGSKEVFLKKASTSHK
KFTYTPTINAKGEFVNQHLLFSKLKNAPKVSPGFSVDVNLTGMWSEDLLKKYLREIILMRPATAIFKQATLLILDSYPVH
VKVVNELRDKYADLFKVYFLLVPPNFTGLLQGIDVSLGKSFQGSYDEFYDAYVAKALNDKSLQTKKGNIRMPTYIELSSW
IKEWSKGRSADDIAKCFRVVGAHPDVNPLKNPESLHEPLRKCFDKSFDFDKWLEQHQDLLEVPSNNFFDLNNDEWGFAKK
PDSLWMTLYECTKSTDKFKSWKQSHIEKIVEFIHGDPILHGLYDDEEMVKFEKEVLSDSRVELSAFSKVLGRKLIFIVLN
DSMEEEEHLTYENEQESEPIKILLFNNSYAYKKDD
>SMAR12#DNA/TcMar-Tc2 284-1564 via tfasty with Tc2_FR4_tp, 1 stopcodon. Probably over 85% similar to Tc2_FR4_tp in Fugu.  [Schmidtea mediterranea]
MAPVKRHAYEADFKLNAISHAVQHGNRAAAREFNINESMVRKWRKQEDALRQVKKTKLSFRGNKARWPQLEDKIEQWVIE
QRTAGRSVSTVSIRLKATVIARDMEINDFxGGPSWCFRFMKRRNLSIRTRTTISQQLPKDYEEKLAIFRTYCKNKINEKK
IRPEHITNMDEVPLTFDIPVNRTVEKTGTSTVSIRTTGNEKSSFTVVLGCQANGQKLPPMVIFKRKTLPKEKFPVGVILK
ANPKGWMDEEKMSEWLSEVYVRRPDGFFHKSPSLLICDSMRAHLTDTVKAQVKKTNSVLAIIPGGLTKELQPLDIGVNRS
FKVKLRAACEHWMTEGEHTFTKTGRQRRASYATICQWIVDAWAKVSVSSVIRAFRKAGIITEQLSNSNETDSDNDDKKDP
GMLDAEIAQLLNSDTEDEEFDGFLVEE
>Tc1-4Ory_tp#DNA/TcMar-Tc1 137-1151 Probably > 90% similar to Fugu Tc1_FR1 [Oryzias latipes]
MGKKGDLSDFDRGVVVGARRCGLRISETADLLGFSRTTISRVYREWSEKEKISSDRQFCGQKCLVDSKGQRRMARLFQAD
RKATVTQITTRYNRGLQKSISEHTTCPTLSQMGYSSRRSHRAPLLSAKNRKLRLQFXQTHQNWTVDDWKNVAWSNESRFL
LRHSDGRVRIWREQHEIRDPSCLVSMVQAGDGGGVMVXGIFSWHSMGPLVPIEQCYNATAYLSIAADHVHPFMTTVYRSS
DGYFQQDNTPCHKAGIISDWFLEHDNEFTVLKWPPQSPDLNPIEHLWDVVERETRIMDVQPTNLRQLRDAVMSIWTKLSE
ECFQYLVESMPGRIKAVLK
>Mariner-11_DK_tp#DNA/TcMar-Tc1 356-1405 via tfasty with Mariner-3_DK, 2 frameshifts. [Drosophila kikkawai]
MGRESEILLEMRKIIFKNYLEGKGARVIGRIVQRPPSSVQTIINSNGNSGTLEKKARSGRPKILSDRDERKILGSVKANP
KNSAPKIQEKLLQSSGKKVRPQTVRNVLHKNGYKARTPRRKPLIFIVKRKKRLDFANKYLIEPESFWDNVIWSDESKFNI
FGSDGSQKVSRNPNKEMDLKNVTPTVKHGGGNMMVWGCMATAGVGKLVFINTTMDKHAYLKILKDNLKDSATQLQLNGLT
FLFQQDNDPKHTSYLVKEWLLYNCKQLHTPPQSPDLNPIEHIWNLLDKRIRKHQISSKEYLKQVIQSEWEKITQNDTKVL
VNSMQRRLQAVIAAKGGPTKQLRRQELIFF
>Mariner-9_BM#DNA/TcMar-Tc1 296-1390  [Bombyx mori]
MPGSRRHMDVETATRAVFMLQEGESQRSVARRLGVSRRAIRNAWERFLEXGSVTRRSGSGRARATTVQEDRYIRLTARRE
RTIFARVLQNRLRQSTGTRIGDQTIRNQLHEDGQRSRSHVIRLKLTRAHRAARLRFAREHAEWTTDNWRNVLFTDESKVK
FFSDDRRVRVWRREGERFSEPCIRERDRFGGPNVMVWAGISLLGKTELVILEEGPITASRYVDRIIRPHVIPFSQRVGEN
FVFMQDNARPHTARTTQRAYFVFMQDNARPHTARTTQRAFSEANITVLPWPAMSPDLNPIEHLWDQLKRSLKSNFSNVTN
RQELINALKLCWGRIPEENITHLIESVPDRVRECIRNRGGPTRY
>Tc1-1Ory_tp#DNA/TcMar-Tc1 365-1377 [Oryzias latipes]
MRNKEHTRQVRDTVVEKFKARFGYKKIFQDLHISSSTVEEIILKWKEYKTTANLQRPGRPSKLSAQTRRRLIRDAAKRPM
ITLHELQRSTAEVGESVHRTTISRILHKSGLYGRVAKRQQFLKDIHKKCCLXFATSHLGGTPNMWKKVLWSDETKSELFG
NNAKRYVWCKSNTANHPEHTIPTVKHSGGSIMVWACFYSAGTGRMVKIGGKMETNVRKTTLEEDLMXSAKDRRLERGFVF
QXNNDPKHTAKSTMDWFTNKHIQVLEWPSQSQDLNRIENLWKELKTAVHKHSPSNLTELELXCKEEWAKMSVSQCEKLIE
TYSKRFTAVITAKGGGTK
>Tc1-2Ory_tp#DNA/TcMar-Tc1 382-1243 (ca. 50 AA missing internally) [Oryzias latipes]
MKSKEHTRQVRDKVVEKFKAGLDYKSISQPLNISRTKVQSIIPKWKRYGXVGESVHRTTISCALHKYGFYGIVVRRKQLL
KEKKSLSQFAISHVSDPANIWKKVLWSDETKIKRVWRKSNTAHHSEHTIPTVXHACGNIMVWSGFSSAGTGDLVRVDGKM
DGAKCREILEENLLKSVKHLRLGRRFTFQQDNSPNHKAKATIXWFKMKHIHVLQWPSQSPDLNPIENLCQDLKTAVHKSS
PSNLTSLELFCKEEWAKISVSRCAKLVETWRKKLAAVITAKGGSTK
>Tc1-2_Xt_tp#DNA/TcMar-Tc1 329-1306  1 frameshift; probably has short deletion with respect to autonomous element. [Xenopus (silurana) tropicalis]
MGKTADLTAVQKAIIDTLKQEGKTQKEISEQIGCSQSAVSRHLSGKSVGRKKCGRKRCTTRRGDWALRKIVEKDRFLTLG
DLRKQWTESGVETSRATVYRRVQEMGYRCCIPQVKPLLNQKQRQKRLTWATEKQHWTVAQWSKVCHSGNQGARVWRKTGE
REMPKCLKSSVKYPQSVMVWGAMSAAGVGPLCFIKGRVNAASYQEILEHFMLPSAEKLYGDEDFIFQHDLAPAHSAKTTG
KWFTDHGITVLNWPANSPDLNPIENLWDIVKRKLRDTRPNTLDELKAAIEASWASITPEQCHRLIASMPRHIEAVISAKG
FPTKY
>Mariner-3_Crp_tp#DNA/TcMar-Tigger 122-2002[Crocodylia]
MRRPSQMELRAAWVPKQDSGFXLSVAIVFKMSASNTDSTSASASTRKRKAITLEEKLEVVKRYERGEKTKEIRCATGLSE
STLRTIRDNAEKIKESCKSATRLSTARVSLTRSAIMEKMERMLTTWIEHQNQEHVPLSTQVIQAKARSIYEVLKRDDPEA
KPFNASAGWFDRFKARHGFHNLKLTGEAAAADKSAADKFPSILQAAIEEGSYDPRQVFNLDETGLFWKRMPSRTFISVEE
RTAPGFKAAKDRCTLLLGANAAGDFKLKPLMVYHAENPRALKGYAKGHLPVYWRANRKGWVTGSLFEDYFSSLLHLELRA
YCDRQNLPFKILLLLDNAPGHPPSLGDLSENIKVLFLPPNTTSLIQPMDQGVIRAFKSYYLRRTFKKLINETESKEKANV
KEFWKAFNIKMAIDIIGDAWNDVTQQCLNGVWKNIWPAVVNDFRGFAADEFISDARHEIVEMAKSVGFEQVDEENVAELL
DSHREELSNEDLLELDRERHEEEEPMEENERPSPRVLTMKGMADAFKLLDGYLAFFDENDPNRERSAKVARLMKEANACY
TELYREKRRCSVQSSLDKFFRKRDSTISTQSTDSQPSTSGGEPATSGGEISPPSFDVFDLDEDSAPH
>CR1-1_DAn_gag#LINE/CR1 47-868  [Drosophila ananassae]
MSPLVCSECSGEVTATQLRGCEAVRCSSICRRAYHTDCVDLPSEAIKLLINIPNLLWQCDSCVIGNDSHSKIDELNMKVL
DLESLYMSINAKLDLALESSSGPMAASEGSQRVTPPTTSTNAENKKSSLAQIPTGSKVAVPRNKRNNPSRRIVGHAPSCA
QLQVLPSLKYLHIGKFATATQPEALCKYVADKLQLDPSDVACARLVKKDADINALKFVNFKLGVPEQHFPAVFKVDFWPM
SVKVTRFLHREPAKVIDLPARLPRSNPGASKNPQ
>Ambal-3_FCy_pol#LINE/Ambal 4583-10780 [Fragilariopsis cylindrus]
MTISSQQRQRQSDQPTSAGRQEITPRRRRKRRQDLNENQNAFFQSNNSRANPYTEEQAAKDSEAFGDDYPPSPGKNCTLI
TFQNIGPQKDTFFDHKSDKTSKAFKESQAGIALYAEISLVESKLEAADRFSTRMKRDSPHSFSNVTSNIHEKEATIWNQA
GGAAFTLQNNIKAHQTTYGEDSTGLGRWTWTRLRGKATTFTTIISAYRPCKNGTGLSTVWSQHCRYFRESDSIKLPNPID
EFDRDLIHEVEKLKLRGDNIIIGIDMNADVRKNNLTTQLQKLHLRDAILTAHPTKSPPATFNRNRSRIPIDSMWVSPNLE
ITRAGYMPFDGGLPAAPSDGHRMLWLEVDNFSFLGKHIPTSTPPLAVSRVKSHDPRSRRRYQRLVRKEYKKHRVFKITEN
LAKAQAFFLTNDPTAYDKGVPFVAADGVSVEWSSVHPDFVIPRTTLFTIPEEEIAEGATYQQKRKLHHAILDKAENSIHN
ISRNIRKGVDKKMRQIYAGATAYSPDNQGLRDTVTFWSRMVKLKKKVNTSRTTLKRLAKKLKLPWLANSNTSLQTAKEKL
TEAYTEMKKGKPLAEKKRLKFLREQIKNLKDQKTTRKTLIPSQIKSLLKQHRAPKEYRKTLIDALAKEQEILRKTPDKAK
IRKQIEARIKREQKSRNIGKAARHIRRKGLKDPVLRAVANDQQGNPYDCNSQETMVRAMAKSNSERQQQCVQTPFQMAPL
LAVFGYLMDNDEAGQQVMDGTFIPPAGTDSVAVELLETLKMEDSIRALGPLDMTITPEDNRAGWKKQTERTSSEPMGLGF
NHYKAACLTDDLNKVDTFFRNFPLQMGTSPKLWKLITDFQIFKRSNVFHVDSMRLIQLMDAEYNMNNKTLGKRVLAHAEK
AKAVSPDQYGCRKNHTAINACLNKVLLMDGMRQKKQAGAIAMNDAKGCFDRINHTFAILVLMSFGVSSLLARSVFETLQT
ADHHIKTGYGRSGKAYGNNDEEEPHQGIGQGNGLGPTLWALLSSILIKNMKRHGHGVNLRSALSLSLVSIVCFAFVDDTD
LAITGKDRLTTGEEVIEEFQPALDRWARSLIVSGGALCSEKSFCYLIDFQWTGTDWEYRSKDDMPGSFTLIDKHGTRREL
KRMNAEEAEKTLGVYLAMDGNDGRQFRHLHEEAVKFGDQIRSSKCDNNTAFYTYTNCFLKSMEYCMPTTDFTETQWNDIL
RPALRKALQRSGIAANFPREVLYSPDLYQGLNIYNPRFCEGIKKISTLIQESVNQSSTGDLIRLTAEGLRLELGIPLIAG
RIDWNIVQAYTTKVWYRGVLNFASEHNIEFIEDYPQIPLLRQNDQYIMQGFIKAGYRNKELQILNYMRMSLRAISVADIT
SVSGLTINHLAWELREGNLLREHYDWPRDPPSFTKKQKDFWKKALGNTFIRPQSILEHRILAQPVSTWQSLSALDDWPYF
YNPGEDRLFKKHGNSWKIYSHHSGRVRNRKYRFNNQTCESLPTSTNLLASVSLRHTPANNPNPVVLAKECTSEWHYEEPD
TDLASYDPTEGPFACIQDAFDSSRASEKILLDKVELPADDCQAIATGISQGTARAISDGSYDPNTLKGTSALIIVADKDD
KQPLEAANWVPGLASDQSAYRSELAGVAGILAAVAIIVQHYELTTGSITIALDGESALDVSAAATIMNIGQADFDLVQEI
RTRISILPITVNWKWVEGHQDRKGKSMDWWARKNTIVDGKAKSYLKQCKREKRVHRPVRLLYEKWAVYVNGIKISKIDTE
PLYATLFAPRSLEYWKKHHDIKVDPQHDTDWEASQQAIKKLPQGQKRWLSKQASGCIGVGHVLKIRKWQNHSRCPLCNKD
EEKTSHVLTCQDKDSKANFKKNLDTILKPTLDSTNTAPSLSKAILEILQIWRQDKKVNPSDFTLNFGIRAAIKDQNNGLG
WTNFALGRWSRKWQVSQQQFYDRIRSKKKSKRWAAAIIHKLLLTAWDQWDFRNKIAHSDEGPGAIALRQRLDAEMLEETR
SDNRQILRQDTFLFTKWTYTELQALPSQQKQQWLRSVFQARKAINYNAPTVPYISAMSVAMQNYLD
>CR1-1_DEu_gag#LINE/CR1 524-1382  [Drosophila eugracilis]
MSDIICCIKKCNKIVSVDQVSVHCWLCDNIAHSKCAGFKSATVPDALGRSDSGLHYCCDRCREAQKEIRSFMRQTKNGFG
QVLVAFRKANDLFSALDTQFNNLQLLNESPKRKKTSRLPPAVTASNANNSLLPPSDVQQSPSLSPLPSTTPIVTTPVTAH
ISDPENVAKVRRHLSDEQSEVVALDPPVPXVLQAQKNXPLTHQRNLGSGLPAPTGSVGKPPAPPKPLIGIPLEKHIFVSR
LSPDTSESDILAYIQAKLKVDIRVENITKYKYSYARNVASFKIRVPP
>CR1-1_IS_pol#LINE/CR1 101-2911 [Ixodes scapularis]
MECTLYYQNVRGLRTKSSEFLSGVIGNSYTIISLTETWLEDTIPSSQYFPPCYSVFRKDRDYAATRQRYGGGVLTAVDTS
LCARRRYDLELYSECVWIEVTCRDGLNFLIGNYYFPPHLSSDVFARHFRDLEGKLDVTKFRVHIYGDFNLPGIDWLANYN
LITSDVTSLKASSLFDFIYFNGFEQRNTIQNSAGNVLDLVLVSTPINYISPITDPLTRVDHFHPPFAVSFCFPLRKQALC
SYEYLLYSSGDYLNMYKYFQCYDWKPILNNKCADSAAEALTEVVSSAINDFVPKRVSRLNKYPAWFSKELRSCLRRKLHY
HRLFKRSGLDKWYAKFSECRALAKWLFKKDESAHLHGLESDMYAKPQNFWKYVPTKKKRNSSVAPMRNSSGYTCDSIEIA
NMFAEHFKSCFSSASVPDNNATCHGTSDFLSFIPIDEPEIRESIRNMKSKLSAGSDGIPSFIVKGCAELLTPVLLHIFNL
SIHSGIFPSIWKRSVVVPIHKAGDPSTVNNYRPVSLLCSFSKVFEMIMHKRLYRHFRHKMNPEQHGFLKGKSVETNLCSF
LDYAVPLVCNREQVDVIYFDMTKAFDKVNHSTLLTKLDSYGLCLTYCQWFKSYLTCRTNYVRVSGSMSDYFSSPSGVPQG
SNLGPLLFLMFVNDISLCAKNSKVLLYADDIKLFRRVQSHSDCVLLQEDALQISQWCAKNYLPLNEQKTRTMSLTRKRDS
LAFSYTIGGSVITRVSVIRDLGIFIDSSLNFNHHVLTICNASFRNLGAISRFTRKFSSPVCLVRLFCCLVRTKLEYASSV
WNCINLTASCCIERVQKRFIGIIYDRYFDRTCYYSYEQLLKKLGLCTLLDRRRLRDLMFLHKVVNGAVDSPLLLSTVCFH
APLRSNRFQSPFYPSALNVASPLTRMQLEFNKLDQSAVDIFSDLIVFRHRLESIICT
>CR1-1_DK_gag#LINE/CR1 496-1602  [Drosophila kikkawai]
MATCCFPKCPNGQKISSRQVTVYCWLCDNIAHIGCADLGQNGSRITDRIRENPGLDWTCPSCLHIKSDMRVFMRQTHLEF
QSLAAGFKELSTRFQKAEHHFKSLKLLSDPANKNRSNLSXKFLSLPDPECPLMQFTPRAKPAAVDNGSGDDAASIPTSMV
EDLVRPLDQQPVNVVQASTLHAAASAEVAAPVPILGGGEAAMLPVQQPVYTDQASTSRAAAINDASVVSNANPVAPPVVT
ISAPAVTRSGPQQSTISGVAKRGPVPLAGVAPKKQIFVSRLNPGASEGDVKTHLSSKLNVSVTEFSVSKFNFKERRDISS
FKITISDLLFSKALDPSVWPEHAIVHEFEHKSTPRARGPQTPSTRPPKN
>Ambal-1_TP_pol#LINE/Ambal 5705-11992 [Thalassiosira pseudonana]
MSSTARPAPPNPGPDQPRQQYLDTWVIGSPKRNGGGNVEPSGDPLCSRGSTDGILRVAINNINGTTFHQKGFEVAHEIQT
IQELGIDIMAMCESNRAWTYKNKQEYERQTHLLWHNTRTVFASCPTGAEGYQPGGNVLNINGPAAGRVKATGTDKWGRFC
WMELRGQRDEGWVIISAYRVCQEESHKPGALTAYMQQYTAMLSAGITRPNPRQQILDDLLHLITSKREQGFRPILLMDAN
EDWVTNSHGKNQLADFMAAANLQDAFYERHQQSPPTYTRGNSRLDYILVDPVALPCIRRVGYLGTHEGNFSDHCLEYVDF
DMTTFFRGVTFRPTSIMSREIMLEQADKIESFLSDLRATQNRYMIPERIFRLARRFAMEGPTKTLIATYNSIDTQLTEMT
RSAAKKNGRKKFGFMRSPDLCAAGQRLLLGKAMLSCKARGEPFSQGCIRSAEKLGIDLSEFERLTHTKLRAKVTEMRRDL
WEVQKECEERRISWLEGLAQDRARAMVKNDWERVMKDMIRKTEERRVNRKLTTVIKGGHAGMNRVQVPLNEWYVSEHSHE
LYHYNHGCFEAYPLDTDGLYFPHHTLKVLPDDASPVEVTKMDHNDRYCITRRIPKPPNGWRDITAPVEVEQQLLWRNKRH
LQQTTKEQGISTTEPMQSLRRNHGLSNMTNDLLAGQLRVDVEVTETMAAWFKAVAQTDAERHQPPVVGSISTDEYQEMFK
AAKERVSSSSSGLHYTLWKAMATDPAMAKFLSIMISLPFIYGFACDRWTNAIDVMLMKKKNNCKIHMLRIIGLLEADLNT
ALKFFFAKRMMWNAEATGEVSNEQWGGRKNMSSIDAAMLKCLTFESARITGDTIGSIYYDNASCFDRMHPEISNIIARKH
NVDTNILKARSIIIHRMRRRVRTSMGTSEEHYGNEDGEDALGGEIQGKGDVPSLWGLQSNTLLKAHQSLCTGLHITNPDR
TREMKRNNTAFVDDTDGWASAEFSSMTPIQEVVDRLQHNGQVWNDLTNITGGSIAFHKCKWQLLAWEVVRGELRIVKSTD
QRIVLKDNKGGMAVIDFLGPDQPNVGLGYRLCPDGNQTHQLKFVKDAMKEICGALVSAHITQKEALQAMYQRLLPKLDYA
LHLSHLSERACNDIDVIVNRALLPKLKVNRNMPRDVVYGPLRYGGLGFTDCYTKQSQLQVPYVLKQLRWDKTIGNDMITT
LDNIQMASGLVQPLLEYPNPEVDYIDQGFIMSMRKRLSEINASLWVEDCWTPALQRENDTSIMETMVKVKSTLKERRAIN
QCRIYLQVITIADLADSTGTFIPAGRLTGRWRAYSSLKWPRVAKPSKKAWAVFRRFLRCTFCQDHSPWAGVENSMELTEP
LGKWFPVKRHVEFQCYRTSSRLYWRDTVERTSDDGDPEDDRCEDTIAIQVFTEGKTKGYFEYSHDVDEVPLTAHPIAVHK
LNDSIWTHRQYRPADLPAQRQYPPGHIIGDTLSGSDLRKLRTGSDGSVIREHQRVAAAWILDGGTGHRLVACVVMANLSS
VSSYRAELEGSLRLLHHIEQTGMSTAEIEQWCDNSSAVTAMNEFPNAPGAMLGADADIILAIHKIKQRLSSKFRCQHVYS
HQDDPAKMKRIERAKQLAEEKYLRHNPKSRETVPTRVQQRGDEREGDIERNATDTLIENGQTQTRGPSPQLARRDDMNTN
AMHHERNIRELAPTELSDEAQLNIACDEYVGDTVAAWSQNRDQPMPQVLEPPYEGSKALLRIGKLWITSDYSKHLHFARR
APFARRYCMRRHKWDGETMSKVDWDAIESHRKTMAFHQVVRSSKIMHGWLPIMHNQGKWGTHITQCPGCACRDETFAHMI
QCPHRLMREKRTEILRDVLIQCQKRRIPKRVAQAIREIIGKLFTGESDFASPTHTPSIARAVQAQETIGMLKLLQGFPAI
EWRQAMASEGTREHIPRRMRWILGILLNHVIEPLWTTRNHILHKTPNRYNEDDNGXLGERLTWYRENRYQLLPYHQHRLA
EHDADDIERMSNAVRREWVRHLDTARAVYESECAARQHGQTTMTEHFTTLPTPLHSRPTWIPCTPPPAPRKQRTRIRKRF
VQMKLTADPRYVANDG
>Mariner-5_SM#DNA/TcMar-Tigger 419-2056 [Schmidtea mediterranea]
MEKQVQKRMSFSTKEKLLALDQLKNGKQQTQLARDLGISESTLRGWKTNEVKIRSLPNILEDELGLQRKRVKSASDNVLD
SALYQWFVQARSEGVPISGPILKAQAEKFNRRINGEDSKFKASNGWLDRFKKRHAISQVLVSGEIRSADKEAANSYPFWL
KKFLEEGCYTADQVYNCDETGLCYKMLPNRTLATKTDNHKREGFKKRKDRVTLLFCVNKSGSHKLRPLMIGKSKAPRCFH
HVNMKSLPFQYINSNNAWMNTTVFYDWFHKTFVPDVRAHLRKLKLEKKALLLLDNCPAHPPAENLVSSDGKIKVSYLPKN
TTTEIQPLDQGVISVFKQNYRREMIKGMVLDNNGSVDQSLALLTLKEVCHLGGKAWEAITENCIERCWMKGLGAAFMPSI
QNSSDDELGFTGFTEEDVRLAEDVLKIYEPSHHDILNWYSVDEICPIYEHISDEEIVINVGMKNEAAQSVPEKTEDSDND
DDCSTIPPPKVSEAVVHLEASLRWLETQDVDSLKVLQLRNILEFAKNKQSAAKKQTKLDVFFNKL
>Mariner-4_AMi_tp#DNA/TcMar-Tigger 88-1737[Crocodylidae]
MSAKRKSMTSPGGSAKKQRKAIDLEMKMKIINDYEAGKKVKAIARDLELAHSTISTILKDKDRVKEAVQASTGFKAIITR
QRKGLIHEMEKLLAIWFDDQIQKRMPMSLLIIQAKARSIFETLKAREGEESTETFTASRGWFQRFRRRFNVHNRSISGEA
ASADVEAAEKFVDQFDEIIEKGGYRPEQIFNVDETGLFWKKMPERSYIHKEAKAMPGFKAFKDRVTLLLGGNVAGFKLKP
FLIHRSENPRALKQVSKHTLPVYYRANSKAWMTQALFEDWFINCFIPSVKHYCLEKGVPFKIILLLDNAPGHPQHLDDLH
PDVKVVYLPKNTTAILQPMDQGAIATFKVYYLRATFSKAVAATESDEVTLRDFWKSYNILHCIKNIESAWEGVTEKCMQG
IWKKCLKVFVNNFEGFDKDXHVDVINKKIVELANVLNLDVEVKDIEELVEYVEGELTNEDLIELEAQQHLEEEEEEEEER
MEEVQKKFTVNGLAGVFSKVNAAILELEGMDPNVERFTKVERQMNELLRCYCEIYEEKKKKKRKLQSRPH
>SMAR25#DNA/TcMar-Tigger 514-2193 (may miss bit of C term)  [Schmidtea mediterranea]
MLHNSPALKMRKAISLDTKIKILDQLATGQGATVVGNNFGIHEATVRTIKKNETAIRASVCSGTKLSAKSSSYVRDVVKE
KMEKALVIWIEDKSQKRIPVDGLAIKQTALRIYKRIQEVDPDTSSQSKQHAFSASTGWMTGFLKRHALHNIKIKGETASA
DELAAKEFPEKLKKIIEDGEYTPDQVWNLDESGLFWKRMPRRTYVAKSQKTAGGFKVAKDRITLLFCSNASGERILKPLL
VHRALRPRSMKSVDFNKLPVHWMANKKAWVTSAIFTEWFQKHFIPEVRRYMKEKCLEFKVLLILDNAPGHPVLEHPNVQF
CFLPPNTTSLIQPLDQGIIATFKTYYIRSSFHYVVEKLDNYEESSVIDEWKKFSIMDCINQVKIALDLLKPSTLNSCWKN
IWPECVKCKDPVIDNNAELADIITMANAIGGDGFDDLSLADVEELLVDESLSENEIIDLTLETRYDKEHSDSDERDRPIL
KASLIKEGLDLATKLGSHFEQHDHDEERAAKFQRELKSLMASYREVYNGLTRNKTQSKITDFVQKSTDVPTQSARNDKD
>Ambal-1_FCy_pol#LINE/Ambal 3067-9630 [Fragilariopsis cylindrus]
MIPTQTNIFRQTYERNNNDEEDKDNEMPTLQDRDREDSDSDDEESEDEIVYENYDEQEVAYGDNQDTLENRLFKLKEEIT
KISNLQTNNLTDSLTKTTIAFVPSRMINTERQKLKEERKENKRELLQLQKEIIKETKEVLKWERIQAKTRNQEMEDDEED
EDESVYEPITMPKLIKRNGDDDDDRSVDSGSVQTEDNTTKEPVTLRLRGGAPPEIIEIVEERFILEALDEEEAEPMGGTM
EEPKLPGMLRISGCNPNGIKAGQLKSHLQNAMDLNVDIQCYSEVNTDFLQTQQRQKFYENTKSMDRQARAVWGTSQVVVE
NKSAFKPGGTAIVSMGKTAGRVKKSGTDSMGRWTYQVLDGKGGKDILIVSVYQCCKQPTNPKGVTAYHQQEIMLSETNRV
DRDPRRNFYKDLKKFLNEFLTDENNNITPIILGDWNEECKGTSTSQKLCDYFGFVNIFKQVHPNHKQFKTYMRGSRTIDF
ALAPPELANRVTNFVYEPFMYRLKGDHRAYYFDIGEEVLFGNKQEPVYDQAGRTFASKDPKAVTTYLAAAHSHLMANAVM
TRIRNLLASDDPDHEEAEKLDSLMTQACEHASNQCKRRRKDYWNIEIHETKRNLSVWCQYKSRRVRKLSSRALIARTSAL
GLQMREGMPMEEILGQIEILRTRVKEIHKESEKKRDESLTERANMAEDAGDKEKAKAIRQMKETEQKTRAFQKLKFKRGL
IHNGGGISRLQVPITWPTAEEYNDETDYNLEDPKATDQKDASKWREVNCPKEIEFLLRLRNQRHFGQAESDRTPFTTETM
KHKFNWSASTNEAELVLKGEYNDDELSDITRLFLDNMTRVTETEDKPKFLTMKEFTGKFKVWRETTSTSPSGRHLGHYKA
LVATIDRSLKEEERKEFVTFQEEISKCYIGLINYAIKHRYSLQRWKTIVNMMIYKEHGNVKIHRLRVIHLYEADLSLLWG
VKWREGMHTALKTKSLHQGQYGGLPGRDCTSLTYLEELRFDYSKLTRYPVANFDNDAAACYDRILCAIASLAGRKYGIHK
DVIFIHAQTLEEAEFKLKSSLKVSDTSYRHCVKFPIHGTGQGSSNSPTIWCFISSVLFQCHNERASGMLFQSPEGDMIVR
FNMVGFVDDSTCITGGNPDDTLQELLKKMQDDAQLWHDLLWCSGGKLELSKCGYHVIHYDFEDSGIPRMKHNPGESITLQ
NEKGEPISIKSKNIYQTRVNLGHAKAPSDSCNTEFERTLKKAVKIGEAITQCGGTRAESKMLYRAVWKPAVEYILPQSFL
SKKQLQKIEKASLPKIYAKCGYNRNTSRAVLAGPIELGGGGFTPLYVTAGTGYVTHFLKNWRTPTEDIGKQLRIVYAWTS
YQAGVTYPLLEHPERILDYVNGKVIPGMREYLDTIDGKIKLNNTYIRSKLRTNDKSIMERVAEMEFTTIQRERINCVRMY
LGVMYLSEICNEDGKSLQKGIEDNKHNKTTYTVSLTRPKQQKPNSYSWKFWKKAIRSFTTDDKKLELELGSWTNQHSKSG
KWESYQSNIDNNIYHHCSNKEDNHQYWEVYERQGYQLTLIDEMELDEFKIRNGTPIQIKSLANGMKYGEMTAVIVKDKRT
QNAYGPDVSWDRFIQAQPEWVRVLLEDVHFFSEDGYSNLWEIVACMEKHKYLLAVSDGSVKFHDMSFGWILATPTGERLA
AAAGPCNGRGNSLRAEGAGMLSVTMFIASIIKYLEVEPMKIVFISDNLELIKRLKAHKHYNDPYPNETLKSEFDVTEQIY
RTTETYGIEASYKWVKGHQDKNTPYMDLNLEAQLNVDADKFAGDFQMEKGKFRPLVFLLPSCDAMLSIRGISITSNYRKQ
LIRAYVEPEYIQYLQYKFQWSNEVIEIVSWKCLSLAIQRINRDVLITKICNDLLPTADTLCRMKYQHHDTCVLCNNHETR
DHMIRCTAKSRIKWRNQYINAIRKKLNTMETEYAITEALCSAIAAWLEFGEVDISKFPIQFANAILSQERIGWRHFFAGK
ISQEWLQLQENSTNKTIGKKRDCYVWGASVAEVTLTYFIKLWELRNEEVHGKSVEQQERTRKTKLSTDVRKLNALKDKAR
PVDMGLFHNDIEEFIDSSTAQTIATFISSHKRAIANSVKKYKAASQAGATSVVQWIRGWSNNDDVIERMNTRQRKDILET
DGRKKERRRRKQNSGRQRSIVGFLSLVS
>47227872_Tni#DNA/Zisupton-hAT-hybrid AA 1-557 match the N-terminal DNA-binding domain of the Zisupton_XM protein, AA 580 to end are similar to a near-full-lenght hAT-Ac transposase (with an internal deletion). Probably an in-silico hybrid.   gi|47227872|emb|CAG09035.1| unnamed protein product [Tetraodon nigroviridis]
MAQPFGACGDTKAPGEPLCGRVERDPKVTIRKQSDGRLNLELCKACNLYHCPFCRTSVYKPKADYGSVWTHLEIHRIRAV
KHGATGDPPPASAAFPVQPNPTVDQHPTATYCFVKATGTSDQLPVALAVPVQPAPPVVYASPHPANTAQQALQLSGGAKQ
KIKCSICNLCLHKKNLSKHKLRKHLISDTDITAKDHLRSQCIDSHNGVYAVSKYYKATALPVHVIKKRSAGVSKMLCEED
RCEVILQFQKEGGLPLSQCPHLRSVDFCINHARQEDLDPSVLEELVANHLIGKEMKAKCQKHRHHAAQNLAPLVSLVDLG
GNHCLYFSVFEPKVTPTSKMGRLFVTYNIRGRFWHCDCSQGRICCLHKCLAKWYLFQTNRKLFSLNAKQDAALENAELVE
STPEIIQPPGDESLKQMTEYVYHQKKLPSTLPQNLIQLECEMQFSRQLIPAETVCQECPGRNHRAEDDLAAVLEQTIGDM
SSCGMEVLQAYLHFEALQSHESPSLLITDLYQKGILNMAGIEIQGLPEPFTGEENAEEIWDSVCMEIITSGLNARKCDLG
SNDQSSHVKSITIFLFISLNVDNFISVETNNVIKEAAVSAVTTPFKLSKGKRMNKERTEKCHKAVTRYFVKTLQPLSTVE
SPWFRELTRILNPKYRPPSEDQLVKTLIPAWYSEERKQVVRELLGVTEAALTCDWWTSSARDHYLTVDLHFITTGQMMHR
VLCTKPVYDASAANAPLLGRILEEFGVRDKVLAVTAENESSVDILISGLQIRRLKCFASILSLAAQKAFTCSGVIGWASK
MRAVAVWIRSSSSAQHILQEKQKLLMLQQQLLLVGVPSRWDSLYLMVEQFVEQFPAIQATFTDPQLREEKRYQVTLFLSN
MILSIQKRLQQEIELYRTIPAIPTSEDPLVWWWDRRDLLPFLYKLSKSYLCIQASSTPHERAFSTEGDTISHERSRVLPD
QADLLIFLQKNC
>CRE1_pol#LINE/CRE 221-3284 via tfasty with SLACS_pol, 4 frameshifts. [Crithidia fasciculata]
TAFGLVGPLPTFSSLVSGSIPVGHETLFLSKLHIYIHNNHSHNCSGAGPFRTILTFGAPNSHILTKNGRATRGDGPSVAE
HLKRRRVEGSEPVVVGSRQEGLSGESAVEAIVVESGSEADEESTARGLGASRQAPGDDSGGPVPRAEEDLAPVGYLYPEN
LAVPQGAACPVVGCGYRPNTRVGPRLVEHLNTVHRDILGNIPVDAWRRQGLVRCLRCGSALTASGHGRGAHGGKCGPYRS
RNAAIRARTQSFFGGISQNSDTLTAGNGVSEAGGLVEVGRVEDPTTDPWYRVRTPLKRQIYRTDFRVWQGLARPVLLGYS
LADTAGKEGRLLALLNLPRDHLEVQVNAKRGIQPQPAEIEAQVRRKVVELAGIGAVGRAMAVMTRGRLVEVPLERVMEQL
EELHPQEDPRGYPAAPDTSEVLRAKEQKVRRAIAARMGRGTAPGLDGWTRELLLPLAEDPALLHEITSVVSDIMQGKVAE
VVARRLRSSAVTPIPKDEAGTKIRPIVPESAWLKLASLVAMAEIPSSFKETFKGWQYGVWGDVAKAVAKIRRDSEEHEYL
VALDGVNAYNTMSRAHILQAVYAEQRLKPIWGVVKVALGGPGFLGVYRDGCLKGNLWSTKGIRQGMVLGPLLYATGMAAA
IGPVRQRIPGVPVTAYIDDITLAASGAEGARAAEAYADALETVGVVTNARKSMVVGPEGTRVGIGGVDLPVVAEARILGA
HFRARGTPEARTIEWLQAAVEKWRPIHQKLRQDIIPKNIAMMMTRISLGSKMTFLLQTHSPQELETAAKTADDEVEQTLQ
HLMGQVEITPRARLLAQLPIREGGLGLRRSSEIAKFAQADVGQGEAHQAHTKALDEGIKHQLQPLLSESEVQILKSNAGM
GAGRVLTDSSLRIPDVAATIALRERLLLRVLPEGVQCVCGGDATNYHVHTCSNIPTKPRTRRHDGVVDELVALARKMGYE
PSKEPRADVASRARPDLYITGSLKPAATDVTITYPGRQAMGSTLPLQQAYRNKMGAWEAWGNLRGVDMQPVVLGTNAEIH
PESREWIRRLTSVEDKDKIHTSYNEVTGRIVETVLVGNVELFNAVTNLALVRELM
>CR1-26_BF_gag#LINE/CR1-Zenon 127-870  [Branchiostoma floridae]
MGLTVKEKEEVIPNLIDARIKATIEAALVTALKQSDVLATIVPTIVSAVKESVRSSIQDELKKLQDQLVQQERKCTSLQE
AYNNLEAKYNDLEQYSRRNCIVISGIPEPPVEEGTDNVVMELVNNKLKCDPPINNQHIDRSHRLGKPRTDGKPRPVIVKF
VSYRQKSAVMRAKTKVDARDVLRKDKVYINDNLTKGNMQLLKEARSLVKSNHLNQSWSYDGKIFVKTLNGERQMIFKQAD
LDIFRSA
>R4-1_HMe_pol#LINE/Dong-R4 1065-4413 via tfasty with DongAa_pol, 2 frameshifts. [Heliconius melpomene melpomene]
MLNKAPATGGKVPRMRWSQQLNESVMRAYYRATEGGTNLTAYRSRILSMFQELEPTATVTAQRLSDRVRIIQSTSLLDES
VLERLRLSFQQVNTTNNNSCDIRSQFQHANIESQGNIELSVSAQDDERLRRSLKDAILEYGSIPVNLRPKLPRLPMHRRN
IALVRILDQHLPSHFNNCNDLTDTHSLLYCGAVAVCRVAGVQFPNKGGTKASKHTVPAWQYDTEKRINLTRILIGKLISF
KSGNRRPRVMRFVAEAFAGTNLKPSEYMANVTNRIDFLKQKLYALAKRIRRYRERWDRYNQNSAFQKNQRSVYRKWERSG
DSVVNCEIPNPDASAGFWRSIWSAPVEHTEGEWFCDIAKNCENIIPMRSIKISEIDVRCAIRYASNWKCPGLDGLHNFWL
KWFRSSHSVFATQFQDALDSGSLPTFLTTGVTFLSYKSGCTTEPKNYRPITCLPTIYKLLTSILNKKITGHIVRNKILAP
TQNGCKAGGRGTKELLLIDTTISQQVRRNRKNLTTAWIDYKKAYDSVPHTWLLKVLELYKIDMTLRSFLEACMGQWVTVL
RHLGECDIPATSEPIRIKRGIFQGDSLSPLWFCLALNPLSTLLEDSGLGFRLRRGGKVISHLLYMDDLKLFASKRSDLMR
LLKVTQTFSSDIRMEFGVDKCASMHVVRGSVIRSDNICISDSVSFRTLGEGETYKYLGMSEALGIDERSIKQLVKERFFS
RLKKVLGSLLSGGNKVRAFNGWVMPLLAYTFGIVRWTQTELDSVDRQIRKLLTTYRMHHPRSSVMRLYIPRKCGGRGFLN
VKNLHNHEVCSLREYFLKIDVDMHKDVVTVDKGLTPLSLGKENWRRPVVLTTSDRMAVWKSKELHGRFHRALVGQDVDTV
SSLSWLQFGDLFGETEGFVCAIMDEVIKTRNYQRHIMKDGTIDICRACHRPGESLRHIVSGCSHLANGEYLHRHNQVAKI
IHQQLALQYGLVELEVPYYRYNPMSVLENSCALLYWDRSIITDRYIVANRPDIVLVDRVARRAVIVDVTIPHDENLVKAE
KEKQSKYLDLAHEITAMWDVNATIIVPIVVSVNGLIAKSLDQHLKRLSLSCWIKNRIQKAVLLETARIVRRFLSLEP
>CiI_pol#LINE/I 1496-5233  [Ciona intestinalis]
MKNKNLIIWHWNCRSIYRKLPELKQFVYNGNNRPDLICLQETHLTPKYKVSLPGYSFIRKDRLDRRGGGVAIWIKDXLSF
TNVNLRNVHKDVEHIAVSXSGITVVNIYIPPAANIHESHFLDLLGALKNXAIIVGDFNAHHSMWKSSXCNTIGAGIVDFL
QASQLVLLNRDTHTRVSMNPNDRSSGSLLDLTXATCDIAGRTFVNVSDNLFGSDHLLVEVTLNWIVERSTNFAPRWCLSK
ADWEAYKTMCNNLIKQDLVSNDVHEFCDGLSNAVVKAANATIPKTKPSRRNPVPWWDDECKAAIQAKNKAWQAFKIXYSS
TDAVEFKRRRAIARKLIIFKKQQSWKKFCNSLSGCTKLTPVWNMAKSMFGNRNMSVKPXFTAXDGNQRDPGINSSNYLAA
HFQRSIGSNCNYSANFREGRKRAIDLAIPQXKGLPSDNXPSPLNKAFTIAELEQCIRSIAHKKNTSPGIDGIPYQMLVQL
PASSLTILLQLINNIWISGTIPSNWKHSVVIPLLKPGKPKNTASSYRPISLTSSMCKIMERLVLRRLNWFLEKENVIHKS
QSGFKSRRSTTDHILHLHNDVQCAMANRSSVLCVFLDIEKAYDMVWNEGLIYKLHAIGITGRMLHFISSFLSNRTFQVKL
NNELSDIFTMENGVPQGSVLSPILFNIMINDLSNQLPVTSKHALYADDCAIWVESKQLKCLKTKIQYALNVINVWSQQWG
XKFSHTKTKALLFTNKRKLPDMKITLYGNSITYVTEFKYLGVIFDKRLTYKSHITYIRXKCLRRINLLHILCRSKWGAQK
SALLAIYRASIRPVIEYGIEAYFSASSSNRSVIQTVQNKCLRLATGSMISTPIVCLQALCQEPPVYIRYQNACLKYKLKL
LSFPPNRHNSSTLLRASTSESSFLQVTEEFPTETPVGLIQPFTSPMWEISEEFCDTSLAPLVDKDISNERKQSLFVERIA
TYYQGYTQIYCDGSKQESGCGCSFIIPSEGYTSSSSLHKSYSAYSCELYAIMMALKHVNSKETHNSYLIICDCLNAITSI
AQRRHXKNFILNEILELIFNILNRQMNIKILWVPSHCGIPGNEESDQNAKQSAKTNHCDVSTTALTDCIYTSQVNLRTKF
CEYYVQNNQNTAMKNIFPKLPSNDDLKQMDSRIEEVIYSRLLTGHNRLNGHLNRIGLHENGQCPRCNVNETAEHLLISCI
NTANVTAMLKTLCSEMKLSYNFNTLLTDNALIKHTISFFRALNRL
>X4_LINE_pol#LINE/Dong-R4 20-274 Small fragment near N-terminus [Amniota]
SLLINGLTPYYKYEPKNMLENSHSKMYWDRAMITDQQILANRPDILLFDKLNKTVXLIDIAVLLSRNIPRTYAEKINKYV
ALVES
>CR1-22_BF_gag#LINE/CR1-Zenon 121-1494  [Branchiostoma floridae]
MPTVSKFTRQRSVKVTFLQVEDAQFSDAIELLKKHGVNPLTDIVGIQRRTRGVCEITFKSQSSLAKVSPRLTSDSAVDVE
LYGSGLTVITAFGIPVEMDDNFIRHRLREFGTVEDSRFLTYANQGFPEILTGTRQYRMKITKHIPNSIRIGSELVTFRYN
GQPRICHRCGSDEHFVAACTAVKCTRCFEIGHLATDCDQDIKCNICGGEGHSARSCQLSFANRLNVTTSWTKITPTQPND
KSVKKPVTPGENEYTSQSSVQDNTPTVPKVVVSTAEPQNGVVSTPEPPNGVVSTPESPNGVVSTPESQDGGKEPPGGETD
MEDAEDLVTSQTDGLLLKLDDSGDISAEYETDEESVNKRPLPSSQSDSDDSDTSARRTGKATGKKIKKDADASPSESDDS
DTSARRNGRAVEKKSKKDADEKGTTKTLPSPGKALVSYKTKVVPSSSLRKKGRKGPK
>Perere-7_pol#LINE/CR1 1037-4240 [Schistosoma mansoni]
MGSPNVEGDNSTILRPLSIYSDLMGSDTSFSPSITVSSLKSSLAEHDHPPNTPPIHLTHPILPNTREHTSFAKLTSDHLS
PVNYAGIKLNKQERRANTPTFSSSHSKSDKPQGLQHTILLDKHSSFLTLMLINARSIQNKMTQLRALLLLHSPSLVLITE
SWLSSDITDTYLQIDTYELFRCDRVTKKGGGCLIYASKNMRAEIFSDHTLSKVPDSTWLTVHTLECKILIGCIYRAPNTP
SLTDTIISESFAKAASLDFACKVVCGDFNLPTINWKTHSGPPCYEGILRSLDIHGWQQHVNLPTRNHNILDLIFCHNVTP
ASMVVGEKFHNSDHKIVFCTLPILAKRKKLKTLNTCFQYRDYANADWSNFRFLMKHSDWNTFFTSDNLLETLEIFNTTTK
SALDTTIPSKIAFKTIAPYINQKAKSKLRKLRKTYFTSKDFSALHQVYSVLEGVQSHHNKNKQTEERTALTAASKVQNLC
RLLAKRMRKNENHNIHSLLHDGVTYYDQTVICELLSVWFSQNGNTSNAPDFNIKCISKSHISTINFDIRSIHTAIKTLKP
NASSGVDDIPSILYKMSGPDIHTLLLKIYTLSLEAGTYPEAWKVTYVLPNTIRTEKPGRKLQTYXYHSQYFAYNGKVIQS
QLSDHLLKEELIDPTQHGFIRTRSCSTCLIDFFNEVTRIRDQKKLVIILYFDIKKAFDKVPHNLLINRLQSVGIINPLLQ
WIKSFLTNRYQITKLNSTTSTPRPITSGVVQGSVLGPLLFIIYINNICKCFTTGKTYLYADDLKVIYKTDIGDVRSTMQT
IQHELNKVDDWCKRWGLELNTEKCGWLCIGNTSLKLKLTLNKNPLLRLTSVTDLGVHYSDSLNFSEHISTKASQMRRLLG
FILRNFFQKETKIILYKACVRPIVEYCSFLSSNLRLSDILKVEGIQRDFTRKILKNDQLTDYKSRCHILGLEPLWKRRLR
SNLILYFKLLKNLTYSTCNIALYQDSHGYNLRDKVSTVKIEKHRSKTRENFFLIKYALIWNSLPSEVRMADKLHTFTRLI
DQALTCIDLVQTNTSTSHTDIIGSLHI
>L3_Mars_pol#LINE/CR1 1412-4336   [Metatheria]
MGEGENCLCISXKLDTIESSYNEGRRIAVETPRNSQETKSKKGASSKTHGLKCLYTNAQSLGNKQEELEVLMQGGKFDLI
GITETWWDETHDWNMALDGYTLFKRNRIGKRGXGEVALYIKKVYSCEEIQEPEGGSMVESIWVKINGGRNRSDFVIGVYY
RPPGQKEEIDEEFGKQITSLAQRHDIVVMGDFNYPDICWSSLSAKSRAANNFLTCLNDNFILQKVEEPTRGNSILDLILT
NKEELVAGVEMMGTLGGSDHSXLEFVIEKERKSGHSLTCTLDFGKADFKGFRERIGRIPWTKXLQGKSAQEGWETLKNEI
LKTQRETIPMRRKNGXCLKRPMWMHRELTNQLRFLKEMYRRWKQGQVTEDEYKSMAWSCKNSVRSAKAQNELRLARKAKD
NKKRFFLSYIGRKRRIKEGIGPLLGVDGTMITDNREKAELLNSYFASXFSAKENDLCTGNDRTKMANRELIPKISKEIVR
EHLAALDEFKSPGPDELHPRVLKELADVIAEPLSVIFERSWKTGEVPQDWRRANVVLIFKKGKRTESANYRPVSLTSIPG
KILEWIIKEMVGEHLEREAVITKSQHGFIKNRSCQTNLISFFDRITKLVDEGNAIDIVYLDFSKAFDKVSHAILVEKMER
CGLDDNTIRWIRNWLDGQTQRVVVNGSMSTWQEVSSGVPQGSVLGPVLFNIFINDLDKGIDGMLIKFADDTKLEGRIANT
LDDRVRIQKDLDRLEHWAESNKMKFNRDKCKVLHLGXKNQLHKYKMGEAWLDSSXSEKDLGVLVDCKLNMSQQCDVAAKK
ANAILGCIKRGIASRNREVIVPLYSALVRPHLEYCVQFWAPQFKKDIDKLESVQRRATRMVKGLESMSYEDRLKELGMFS
LEKRRLRGDMIAVFKYLKGCHVEEGLDLFCLAPEGRTRSNGWKLQRGKFRLDVRKNFLTIRAVQKWNGLPREVVGSPSLE
VFKQRLDDHLSGML
>Perere-8_pol#LINE/CR1 47-1342 [Schistosoma mansoni]
MCRKIKVSSIPKKASGNKNAKLRPIAITSPFLKIMEKLLIHPLQPAIKEHCDPFQFAYKCKRSTLDAVAVLHHNIVFGLE
KGKKYVRCAFLDFTSAFDSIPRHLLLNKLISIDADSWISNWLCSYFSGREQYTVFEGKCSTSLLSTVGVPQGAVLPPLLF
SFFLHDLPSSTENTFVKYADDLTVCMPISTSLHPIEMNEFLSRIERWSVGNGLLLNPSKCQAVNFSLRHGQNLRSILGSH
NACAIGDSLINTVSKVKYLGVLFSSDLSWSSHVLLLSKKVYRLTYYIKRLHAFGITRRLLLQFVNSCILPIILYCSPLFF
PGLLRKDFAILRRVLKAVCKVCGESFEVIVNMLVDRHLKSCKLFAGVILSDTNHPLHSYLSPCISSGRTRRKYIKIHARK
QIYKSSVIPYLANLLCDEQAVRVDLVNNLSS
>CR1-6_BF_gag#LINE/CR1-Zenon 99-863  [Branchiostoma floridae]
MTTTPSTREVKRVSDLVDSQLRLSFDKLKEEFLGAVKQDILAAIKAEVRHELDQFKSSFQAEVDELKHTIVEKDEELTTL
KVRLAEAESHADRNEQYSRKHCLLVFGIPPPPSPEERKSEDCASTFMDFTRKHLDVSVQRSDIDIAHRVGRPRDGAHTVI
VKFTNYAKRQEVYKAKKRLKGKTNSTGKSYIIRENLTKRNLELYNSAKRLPCVSSAWTQDGKIFVKVNCEGGDPEIHRIT
GPTDIHQLELMANK
>CR1-1_LG_gag#LINE/CR1-Zenon 264-1001 Fragment? [Lottia gigantea]
MAGLLEHREALTRMIEEAVKVAVSTAIELFDKNLRLYVDGRLKCLDDRMCQIEESHHSVSITHDQFYDQLTDLQNKLDAK
TIEFEKLSSKINSLEQYTRKAHIRIFGIVESDGEDCIAIAKKLFREKLGITSEISIDAAHRVGVPKGRGSGTNTEIPRPR
GIIVRFIRRDERFRVLSNRKNLKGTGVVIVEDMTVENVKLLDSARNSRRVKSAWFTNGKVFVVGQNDYKFRLERIGDLNS
KLPPFP
>I-1_SP_gag#LINE/I 2-844 Fragment [Strongylocentrotus purpuratus]
DKVVHAKRFKKRINGELKDTRSVLLTFERKEIPTELIFAFERYKVYEYVPQVPRCFKCQRFGHVADGCHSKARCVRCGGE
HAFNECQNKETPKCCRCEQNHSAAYLGCVKYKDAVKIHAITQSEKISYATATKRFHETKNPVQTQAKQVVFREAERISKP
SQRNERAKPQNNEKVPSGQAEQAVSSETERNSKPAQRNERVKFNERDQNPESDRGHREKTEEKDPQITVNSVDFLAFIVF
VINNMEKETSNSNRIRLVVEAAHCCLGVQTIHPEMIHERLK
>IVK_DM_pol#LINE/I 1583-5290 [Drosophila fruit fly genus]
IKKKKFLIMTITILQWNIHGIFNNYNELTLLIKDHAPDIVFLQETNLPCNSTNFICPKEYSGYFHNFSYNTSAKQGIGVL
IKRNVPHTYRNINSSILCSALQLKFEQVINIVNAYIPPSQIFSSSDISEILQNLNGSTILLGDLNSWSPLWGSPRTNTRG
KKIESVILENSLIVLNDGSPTHLSTHNTFTHIDISLISPQIAHMCSWSISDNLHGSDHFPITIHINTPTRPDNTLPLPKY
KTDQANWKRFNESCEKSAAYWTVGCLNQQVAQMTKVIRAAANCSIPQTKRVIHKAKVPWWNANLQQLRDQKQRLFSSYKA
NTNDTNLIRYKKANALFKKAVLSAKRNSLEKFTSKISPVSSTKKVWSDIKRLAGIPPTPFKYIKSNSGTLTGSFDIAEEF
ALSWSKYSSDQNFSAEYIRVKNRYLLEPYAIDSLSPSATSLDSNFTLLEIENSVAKAKGKSPGADRVSYPMLKNLSPHLK
TKLLDIFNQILTTGKYPHTWRSAIIIPISKPNKPPSDINSYRPISLLSCLGKTLEKIIAQRLTWFIKRHNLISHNQVAFK
RNHSTMDALLRIQHFASNALSTKNHVSILATDFERAFDRVGIHAVLCRLERWGIGPRLYNLIKAFMTNRSFRVRINNVTS
NSHILHNGIPQGSPLSVVLFMIAIEDINDIVTRHKDIYISLYADDAIIFTKIKNINTVREKFLEILQEINSWGATSGASL
AIEKCQTLHICRKQRCNLSDIVFNSRTIKDVNFLKILGITFDSKLLFKQHCQTLRKQLETRFNIIKFLSSKYSYIHIKTL
IDITRALMLSKIDYGLPIFGWCAKSHLKKLQAPYHGAVRRAIHAFPTSPVACTLAESGLPSIQSRVEETTLMLIPKLYTT
SNCLLTKDFGAIFKQKRKFKCISTLRRCANYIKLLDLPLPKPRRPFKSPALWGSKQPNINLQIYNAAKKDTGRLEYQKRF
MSAQEDLGVKNWIYTDGSKVTGATTFAVVDSNRKIIAGGRLPSYNSIFTAEAFAILKACQFASKNAGKSVICTDSLSSLS
AIRNWNHNDPTTQEVRHILSSHPKKITLLWVPSHQGIHGNELADKAAQEMRLTPSILFTPFNSKDLKSRIKLYLKEKKLS
EWALFMHRYQSINPNCIMFKPPTNVHKRECATFIRLRIGHTQSTHQHLLMRSARPTCQLCGDELTVDHILNACSQLHSIR
SHLFGTHSLSNCLSIPSCENISKIYKFVQKAKFII
>I_Ele42_pol#LINE/I 1649-5911  [Aedes aegypti]
MMIQQPRINHIKTIDMTDPAMTKDPRMEDQTTTHANFDDSSIQSEHDLEQRLHTTPATYQLHRKRFEGDESVVLPSLPEE
EAVLESAVVQDVILPPVDHQTSSPAVEVIHLPPLPNSAKSNCNIYDALRNITVHPSTSKDHATRNFDSPSARLPTSTLTR
EVPDWSDEPLAAVDVDHPYDPASINLTLPPSVQSNPIGYSNIPAMSNDRTHCEQSTLSNDDSSYQSSQEQRRNLLFLQWN
IRGFWSNHTELYHLVHRNPPIAIGLQEMMAKDADKALQRQYTWCFSDRHYSQGVGAAGLGIRTEVPHKFIGISCPIPVCT
ARLFDPYNITVVSIYVPPNSPDKHIIDTLNSIISNAEPPFIIGGDFNAAHEAWGSSKASKRGRQLLCWFVENDFIVLNNG
EPTFLSSRHGSTSCIDITAVSKSFASRLHWSIANDTHGSDHFPIKVYSQEALLEKRNRKRWLYKNANWTLFEHNILESME
IEADLSIDKLGDIILKSAKASIPRTSGKPSKRAEIWWSEEVKAAIKTRRKALRKLKRTATNDPEHERIRKAFQSARSIAR
KTVSTAKRESWDVFCNSFNPQTPSETLWNNFNKLNGKRKNGTKGLVIRGTYEQDPSVITEHFADFFQQASATSVSHESNL
PQSVTNENSPLNEDFHISELLRAIDSTKGYSTGSDNIGYPMIRHLPIAGKYAMLRSFNRVWAEGRFPQSWREGIVIPIPK
PNMPRNTVENYRPITLLSCIGKIYERMVNHRLVTFLEEQNILHPQQHAFRAGRGTSTYFAELKEIIENAKQSKTHLEFAL
LDIQKAYDQAWRPHILHQLNRLHVGNRIKSCIKHYLQDRNFRVSYGGSLSSQKSLDNGVPQGSVLAVTLFLLAINPVFEV
IPKNIQVLVYADDIVLVASSKQLSKVRQHLSNAVKAVNEWAKSVKFSLSPSKSCILHVCQRTGHRGYRSLPDICLNGEVI
PEVNSARFLGVWMNRRGKFSIHAAKTKIALQNRINFIKAISPKASRESLWKISNAVCISKLLYGVELFGNEITTLLQPVF
NQLLRISSGALRSSPTHSLAAEAGELPLQLRVIELFVRKYCKITEKSRRTYTHYRRAVDLTLCEVVGVELPNIAKLQRVG
RRPWNSPRIKTDLSIKHAFKKGQNTRIARVITEDHLISKYANYMKIFTDGSKSGSEVGVGVIGPTFFVERSLXSQCSVYT
AEAAALLTAAHHAPRTETVILSDSASCITAIEKGESTHPFLQEFEKISAHKNITVCWIPAHSGIQGNELADKAAERGRSS
RLLYRSIPASDVIFWVKQQLRRNFQEQWSNNKTTFLQFCKPTVSKWIDRENRLEQKMLTRLRIGHTIITKKHLYDKMSPR
KCDTCNIDLTVEHILLNCRKFELIREELAMSNNIEIVLGNSKENESTLIKFIKKCKLVDKI
>Loner_Ele3_gag#LINE/I 366-1811 [Aedes aegypti]
MFSSRDGNIPTDTFPQQEIACGNVDMASHTGTISKHGSSLTQPSKETSIQHSHSKQCDVENENVHFSQQPRIRQYVDDPN
RERWVVFIRRVNKKIRVKQVTSDLIKHYPSVIFITEVNRDKLRVVFTNYKEANAVVNDDRFRLEYRVYVPARVVEIDGVV
TSDSDLSPNDFKEAVGVFKNPNIPPVKIIDCQQLKKVIKNGSNSQYVPSGSFRITFEGSALPHYVTMNKILRLRVRLYVP
KVMSCTNCKQLGHTKSFCSNKAKCLKCEGQHEEDACQKNVEKCVLCGLDPHDKKDCPKFQNYSSKLKYSVKERSKRSYAE
LVKKTLVSNMFLELSDSDDDSDSDTEYDSLPSQKGKRGRKHIPSSVMSKNKQKVARIEKVHTPEKYNLVPRDSVEFNKSF
PLLSGNAHRDTSSTEPKFQSQKENTMFTGFLKLSTIIQWVLDILKAPKPIQDLLFGCIPMIANFGKQMTIQWPILSLIDF
DG
>Ag-Jen-11_gag#LINE/Jockey 144-1277 [Anopheles gambiae]
MGCSKKGSAPRDAVPSCSYITIPNVTTSNDYDILSEDEEAPSIIAASATAKQQKSKIPPITVTGTQVGDVHKKITSVGVV
NYTTNCTYKGIVVNTTTSKDFKLVVDVLKRHNNSFYTHQLPEEKTTKVVIFGLPEQDTEYIKTVLAEVNIAPCVIKKLEL
KKKRYDDQCMYLLHFPRGSITLSELKQVRAVDHHRVYFEYYSNKYGPMQCTNCQRYGHGSANCYLPPVCVKCADKHTSKT
CPLSQTTTCPDGKIAPAKLKCANCSEHHTANFSGCPARLRLKKVTPTPSRSREFTYNETSFPRLPNTPTRSTPSNHVNFS
DLFHQQQTRSNNNLDFDLNEIGQIVKDVFSNLSKCSSKQDLIAVIVQISAKYCFPNLK
>Loner_pol#LINE/I 1780-5503 via tfasty with Kiri-4_CQ_pol, 1 frameshift. [Anopheles gambiae]
MPPMTTILQWNCRSFLGKIDSFKVLIGQHNCNAFALSETWLSPDKNITFPGYNIIRQDRHDPASDRRGGGVLIGIRSSHS
FYRIPLPTPEGIEYVAIQTKLGDLDVSIASIYIPPGANLDPKKINKDLETLVTVLPKPFFILGDFNAHGSDWGCTHDDNR
APIIRDICDTYSLTILNSGEATRVPSPMARPSAIDLSLCSSSLGLDSMWKVIQDPLGSDHLPIKISIIKRSRTVDQVPVN
CDLTRNIDWTKYGNQMTALLSRVEPSFSVNEEYTNLVMAINECALGAQTRPPPQARIFKRPPTPWWDADCKAAFSAKRKA
FARYRDTGSMDLYIHYRGLERRCKNLLKAKKKAYWPRYVKNLKPSTSLTELQSMAKSMRNSKATNESERVSGAWLEPFAQ
KVCPDFAQAPPFEQSAHGSDPQMDSPFTMVELSLALYSSNNSSPGLDQIRNKLLHNLPDLARKRLLRLFNIMLELNTVPL
EWREVKVVTLLKPGKPASDYNSYRPIAMLSCLRKLFEKMILFRLDNWLESKGLLSSTQFGFRKGKGTNDCLALLVSEIEM
AHSRKEMMASVFLDIKGAFDSVSVNVLCQKLSSAGLTPRLNNVLFNLLSEKAMNFDNGHMKIRRVSYYGLPQGSCLSPLL
YNFYVNDIDACLAPGCNLRQLADDGVVSVASNNIADLQSPLQTTLNNLEVWATNLGIEFSPEKTEMLIFSFFYNTESNRR
LNLVDPKVDIFLYGKKISIARSFRYLGVWFDSKNVWRTHIDYLVQKCTRRINFLRTITGLWWGAHPKDVLNLYKTTILSV
LEYGCICFHWAAKSHLIRLERIQYRCLRIALGSMKSTHNMSLEVMSGVMPLKLRFELLSLRLFVRSTVSNPLIIENFETL
QEIGSKCKIMKVYRDFVSLQVHPSSFQNISSASLPESYSSILSVDTSLREAINTIPDNLRWMTIPNIFVERHGQPNVNHF
YTDGSSSEQGIGFGVYNTCTEAYFKLRQPCSVYVAELAAIFYALLLISACPPDQYVIFSDSLSALEALKSVKAIKSPDYF
VKEILKVLSSLFEKSFRISLVWLPAHCGILGNEKADHLAKKGASEGSFYDRPILPHEFLRAPQAFCIARWQGLWDTDELG
RFLYSISPRVSLKPWFRDISGERAFIRMMSRLRSNHFALGAHLQRIGQVDTKACGCGLGFHDIDHLLWSCVEYEAARPTL
LDAVEKLGRSPGVPIRDILAGSDWSLLRIIFEFCRANGLTV
>I_Ele20_pol#LINE/I 1659-6110  [Aedes aegypti]
MTIFRYLRSHPITAFDSSNAKHRLNTHDDDPRLTTDNEINRFESEECAVLLSTQAQQVEKTVRDALPQPVDSDLXSVADG
TADNTTMRVFEHSRRIQMIVEETEDINNETTQSLSLMPTTVGIHQRSSVVRSTVVGIGGQDVPQVSPFNNHDLAGTAASV
PITDPRTSLTQPGYQNTHLQGDTYSQTHRQDIVSCSQTTQSLSPVPVAVGDFGSSVVFSTAAGTVGQDVPQVSTSQQRPL
MEFTAETIPIPATILNQQAPSRGASVTSSCSSDILPAVNNNDKCFALQWNMRGLRANISELKQLIGKYSPCIVALQETKV
RQTSVPPDFVGKNYSLLLEPKKDHYWQHGVGLAIKEGIPFERMIIDTTLHLIAVRIQKPFQATVVSIYIPPSAQQCETAL
NNLFDQLDGPVIFLGDFNAHHLAWGSQSSNTLGRFIAETTLARGLVILNNGSPTRIDPATGNTSSIDISFCSESLAQKLN
WRTLSDTCNSDHFPMIIGLPGWSDTATTRKKWFFDRADWSVYERITAELIRSDEVWDVDRFTAKLIEAATKCIPQSSGQA
GPKSVPWWCPEVKDAIKRRRKCLRSLRRMDASDCERPAALKRFQEARATARKAIKTAKQQSWEDFVGKLSPSSTTTELWR
TVNTLRGKRQHRTPILKLANRYSDDPSEIAEELAKHYSERSATSSYSPLFQKAKEKAEQQRIDPLLNTNDRYNMDITLNE
LLWALDKGQSGSTGHDMIGYPMLKHLPLSVKLILLEIFNGIWRSGVFPSSWKKAIIVPIPKPKCNTPEPDTFRPISLTSC
MAKVLERIINRRLIAELESSGRLDERQHAFRSGRGADTYLAELEKSLPMTDEHSLIASLDLSKAYDTTWRHGILRTLKSW
RIRGRMMKLIQSFLSERMFQVCVGGQLSRPHRLENGVPQGSVLSVTLFLVAMQPIFRVIPKGVEILLYADDILLVVRSRK
TEGLHRKLQSAVKAVEKWTKSVGFTISATKSSTFYCSPNARRNPSQNITINRVTVPRTNRLRILGITLDRTLNFKAHCKM
VKESCASRLRIMRTIGAQLPRGNRNTMLQVGSAIITSKLLYGIGLVSRGGEAAFQNLAPVYNQMIRYASGAFVTSPITSI
MVEAGTLPFELLATQSVIRIAIRLLGIHGPNRNLPLVQRASTRVGELTGAALPMIAQLVKRCSREWHASKPNVVWDVKNA
AKAGDPPNKVRPIVQQLLSNRFKTSTVYYTDGSKGNDTVGAGLFGVNLAEKYSLPKQCSIFSAEAYAIRMALLLSNESDI
AILTDSASCLLALEAGRSKHPWIQEIESLARGKNVQFCWIPGHTGIRGNNEADRLANDARCQPIINIALPAEDAFKDIKI
GVRLYWERLWLTYRDVKLREIKFDTHKWKDRENNAEQRVLTRLRIGHTRLTHSFLLSKESPPNCECCGTTLDVRHIVLHC
QKYDDVRQKYEINTNSLRSALKNDDEGETKLIKFLRDTKLFEKL
>I-2_DVi_pol#LINE/I 1645-5346  [Drosophila virilis]
MSKMSLIILQWNIKGYTNNYSELSTIIKKYSPQVICLQETHYYNTNTPIPVPINYQIYTNTASNRFGGVAVLVHKSVQHT
QLNQPRPLETLGIEIMSKTKIRIFSTYIPPNKTFSLKCLSDQFETHNTNTNQIILGDFNSWHHSWGSHQDNRRGRILSKF
IQNANLTILNDGSPTHFSTHNTLTHIDLSLCCPQLTPLTNWKILEDLHGSDHFPILISLFPQSQTTNFSSPLFKTKEADW
QLFXKLTNDISELIPNSTNINKEAAILNKIILQSAHHXIPQKTPQHYSKNTPWRNKTLTKLRTNKFKSWQTLKHFNSTEN
LIKYKRXNALFXRELKISKNKAMTDFTSTISPNTPSDKIWSNIRRFCGLNPTKTIHSITDPNNNLLTTDTXXITQLFAQX
WSDHXKDENFNQNFTDNKYTAKPTNYIPSETAQTIESDITQIELLAALHSLRGTTPGLNRISYPMIKNTSHVLKTRITNL
FNTIFNNFIPQSYKTSLVIPILKPNSNKTIITNYRPISLNCCLSKTLEKIIAKRLWWFVTQKNLIHPNQSGFKHGKSVSD
GLLLADHLITKSLKTKKHTSVIALDFSKAFDRVGEHTIVDQLISWKVGPKIINFVKNFMSNRKIRLKIKNXISSPYPLYN
GIPQGSPISVILFLIAYNRLAYIISLQKEIQFSAYADDFFLIIPLNRQKNQTYNLNSLFSKIHEWCSYSGASLSLEKCQH
LHICRKQNCTCNISCNNTPIPSVSNLKILGLTINNKYRWDSHIKQIQPALNNKLNIIKCLSSPKLNCNTHTLLNITKSTL
ISKIDYALFIYGHAPKSTLNKLKTLFNAAIRISLGALRSTPIPNLLFEANVPTIEQKRDLITSKTYKTLLHSSNSPLYKY
IKQYGTQKRSKLTSTLEKIILSCKQHNIPYLPFPNKTTTPQWTFXPSLINTTLQKFSKSNTPPTVYRQQFLELKDKYNNH
TFIYTDGSLQNSTATFAITTENEILKRCILPHYSSVLSAETLAILDAIKLIQKRPGNYIVCSDSLASLKSVRNINNNNLY
PITIRSILTKTAPRIKLLWIPGHCGIEGNELADTTAKSTYNMPLHYTPNFNTTDVTKFLAKELTYKLKQNLELCNRWYKQ
LNTNPTNTTLYLKNINQKNITRSDQIKIVRLRLGHTRFTQQHYNNPDNIIPCPNCHTTNDLTIKHILTNCTATSYLKNQI
FRNRCPLSLLENPTPENISKIIEFLKTTNMYRLL
>I-1_SP_pol#LINE/I 2083-5832 via tfasty with Nimb-2_DR_pol, 1 stopcodon. [Strongylocentrotus purpuratus]
MRIFRYIWRKKELHNQLSEKQKGSAISEEEKPSIICLQETWYDDYNIISFPDYTLITKNRKNRRGGLAFYIHKSVTFQVI
KTPDDQEYQIIDIFMHNHIFSLVNFYNPCKKIAAPALDEMILYCKNQVIICGDFNSHNPIWGSKDIDANGRTVEECMHKH
DMVLLNEGTSTRIDPHTGRFSCLDLTFMTKELAKLSGWSVQKQNFGSDHFLISFDLPFVSKNLPKEGKFEKNEDTRLFAR
SSLNKVDWKLYKMEIKNQMKDCKKEYQEADLQGKLDILNGIILISIDKLTKKVSTEYKARQPVHWWTKECTESVKIRNAA
KNRFMYKTHLYEDFQIYMEKKRITQSVIRKAKREYWRDYCRKFNRTADIGAVWKKIKDKQKSTNQSIPNLIMEAGKVIGK
TATEKANMFLNVFNSLDLAVGKEEIVKRKESETKLLEIINNMQNHEENVLNEDFRLSELNSALLELKNTAPGKDGIHSKM
ISNLPEEIIKMILELYNGIWNRGILPRQWTEAIQIPILKKGKDASNPSSYRPISLTPTLCKLMERLVKNRLSWYIEREDV
ITPIQSGFMKNRSTTDHLIKLETDIQKGMANKEHTVVIFLDLEKAYDRVWRQGIVYELYNQGFTGKILKWIYAFMSNRVN
RVRVGNYISEQKNCNIGIPQGSVISPLIFNFMINDLRRIQDTVEIALYADDICIWFSHRNMTHVQKKLQAALGLIEKWCD
RWGMHLSSSKSRAVVFGRKEKKNIDLQIYSQSIQLEKEYKFLGVWFDSRLTWSKHINEISIRCKKRLNLMRCIAGTKWGN
NSEILHYDYKGLIRSVLDYGSEAYDGASNSLKKKLDTIQFQALKIITGGIHLTSLQALQVECGEMPLQLRRNMFIDKYHY
YLHAAKINHPTKKVLLPCWQYESYSWKMGQGPFVKRLRNLEIGNIEKLTECMTVKPYWHYKMPSISTEIKDFVSKKFSSS
IESKNYAVEVIKTKWNYCLRIYTDASKHQEGYTGAAYYIPKLSLSKCFKTSNISIMRPELVAILMALEWIDEYHPIAVVI
LTDSASALEAIKNMKESSIIVEIYEKLFGIDVNLEWVPAHCGLPGNERADLLAKQAxKKQNTDIIVNKNKSEFVSESDIF
YKSMWQSLWDKAENGRHLYSINKNVNNVFKIKGLNRKDERLIHQFRLGKCNLNYYKYLIRKHDTGLCVECQTIETIEHFL
LSCPKYERQRRRMYRALKTQNPNLGQLLGNEEYIGKVVAFLKGSGRYNEL
>I-2_NVi_gag#LINE/I 237-2246 [Nasonia vitripennis]
MGDHPQNLPRVLRPPRTYATSGLKLNNRHNTRVTTKESIGENKNGLNPKRNSLIQARLNHTKSSNNLDQINTTAKGDDLK
DTKMETEDISLEEIEKIIHTPNDNKTLIQSQPITETNTSSLDQRNHESQNTSHENSKADSERKRPAEFRSPESSSPNNQR
FKKKPYNDNARKNLFNDHSLPTDPNDNRNDKDLPSEYDINIQGPYKIYLQSIDNDRLDAIKIAKSLIPKIEIKDSLHEIK
QLSYNKVCVIAKYRNIANLILNLTDWKDLKIRAFIPNHLLSKQGIIKGIPVEITDDELKQFIELDSPFGPLQITHTRRFT
KKIYNKSTDKVDILPTKTVQITVKGQFLPAEAKVLKVIYPIETYYPQVRQCYRCFRFGHIKNNCKAPNERCIRCGEPKHT
DGNECPYINTQPTCLHCKQNHLPIDKSCPAKIEEQNLKNMATDQNITIAELKNQLRKXPAYNKSHFPTIGNSSQPTQAQT
DTLKNTMYADKVKSYSKQPRNHPTQPSVEPTDRGSTQSVGHNHQLTQSPSQKSKNNNFTPNFRLAKQHTDCLSYVNGNTN
LKIKPINHRMTAKDFFDHSYLQDTHDNLNFTPIEEKINYITEIINDLPITEIRKILRLTENRINHREQQLKQSNVLLTQV
QNTYNDAVNETDNLSKKNDNTNEESSSTEL
>I-4_AC_gag#LINE/I 652-2208 [Aplysia californica]
MDFRAVSPCWTRWRVGSPGDEIKDKIHMDSTKNISPTPIPNKSQTGEAGATPGLGKRKKGLSGEDADNVSIWDIPKRTSL
GWSPFLVISPKDEKQDTNLTTLSVFKIHKSLKHFGIYKPKYIKNLGSTDLLIQVSSSIESGKLLACTSFGGIPVCVQPHR
SLNTSKGVIKSRELYGCTEEEMVQEVDGIVHARRIKIRRDGKEICTNTWILTFNTPTPPTKLDIAYLELEVRPYIPKPMR
CFNCQRFGHTQLRCRRGAACPRCGKEGHSGETCSADPWCPNCRQGGHSASSTECPRWCQEKAILTHRAQYGGTFAQARAT
LYPKGSTPKNTTKTYSEVLKTVPGSVNPTRKVLQTNRKQNTCKNQHSSLETEEDMESTSSTPISPSLHTPSPHTPSSSPP
SQPSSSSSSPSSSSPSSFSSSPPSSSPTTSSPSSSSHKSPHPTPSLLQPPSHHPSSNKAPPPTPRTRSPSSTRIQDSGPP
PPPHSPSKKAAVHRDRSKTKQRQRSPTTKKKCIEPVPSK
>I-3B_CQ_gag#LINE/I 600-2264  [Culex quinquefasciatus]
MDPTESDHEESDFDSTLEGDEDVEMEDSVPGVPSNTTNRDHFLKDEDAGGKGGSSXGSKRTKRKRPKSDPNPVPPQPPIP
PLTPDPIPPLTPDPIPPLTPEPIPPNPDPIPPKTPVPNPDPNPPPPLNPHSQKPIPRPRQYQEGSQTEWVVFFRPKQKPL
NFVQITKDLQKHYPGVVECTKLNKSKLRVIVNSAVQANQIVTDLRFSIEYRVWIPAHKVEIDGVVTDDGLSLVDLSRAVG
RFKNPKLPAVEVLECRQLGNVTTEGGQKKFIPSASFRVTFAGSALPDYIELYKLRLPVRLYVPRVMSCENCQQLGHTKTY
CSNKSKCSKCAGPHKDVDCQKQAEKCLLCGGEPHKTRQCPKYKEREDKMKRSLRERSKKSFAEILSQVTHPNRFAPLADE
DSGDEXSDVEVLFQRDEESDSSGPNPKRNKASKSRKAAGGKGKESDSLNFEEDFPFGPSGKPAPKPAPKPAPIPLKPLKP
VPKLPKIPLKXVPQPNPITDAFKGVLXFSTIVEWLCSFVSEPTRLIIKRFEPLARHIGKQLASTMPLLSFISFDG
>CR1-L1_Tgu_pol#LINE/CR1 1316-4186 [Estrildidae]
EGFKLGLKXEGDAAGLSGSRPKDGKTVLGEKSAAQLRCMXANAHSMGXKQXELEAVVQQQSYDVVAITETXWXDSHSWST
ALDGYKLFRRDGKXRRGGGVALYIREALDVXGIETNDDEVESLWVRIKGRANKAXILLGVCYRPPNQDEEVDNLFYKQLN
NVSGSSALVLVGDFNLPDICWELNTAEKQQSRKFLECVEDNFLSQLVGKPTRGGTMLDLLFTNGDGLVGDVEVGGRLGHS
DHEIIEFSIIGEIRRNINKISTLDFRRADFGLFRRLIQRVPWERALENKGVQERWVCFKAEILRAQEQTVPVCRKMSRRG
KRPVWMRNEVLKELRNKKKMYHLFKEGLISQEVFKGAARACRKKIREAKAQFELNLATSVKNNKKSFYKYINGKRKGITN
LGSLLDEAGNLVTKDEEKAEMLNAFFASVFSGKAACPQDNCPQGLIGGAREQNGPLVIQEEAVRELLGHLDIYKSMGPDG
IHPRVMRELADVLAKPLSIIYQESWLTGEVPDDWKLANVTPIYKKGRKEDPGNYRPVSLTSVPGKIMEQFILSAITQHLQ
DGQGIRPSQHGFTKGRSCLTNLVSFYDQVTRLVDAGKAVDVVYLDFSKAFDTVSHSTLLEKLAAHGLDGSTLRWVRNWLD
GRAQRVVVNGAASSWGPATSGVPQGSVLGPVLFNIFIDDMDEGIESFISKFADDTKLGACVDLLEGRRALQRDLDRLDGW
AESNSMKFNKSKCRVLHFGHKNPLQRYRLGTVWLDSVQAERDLGVLVDSRLDMSQQCASVAKKANGILACIRNCVTSRSR
EVILPLYSALVRPHLECCVQFWAPQFRKDVEMLERVQRRATRLVRGLEHKPYEERLRELGLFSLEKRRLRGDLIALYSFL
KGGCRQVGVDLFHRAATGRTRGHSLKLRQGRFRLDIRKKIFTERIIKYWNCLPREVVESPSLDMFKKRLDLALGAIV
>CR1-84_HM_gag#LINE/CR1 259-1173   [Hydra magnipapillata]
MSKPSSDADRNGAHNTCVNLDVWLKELKTVVLDLKKEINEIKKENLAKDEKITKLEGRILVLELETKKTPETTNNANAAP
TENVWFKKMSAQWLKPGSTSNTALVQAITNNNKLRENKAKNLVIAGLPISKGPSSADKIADDTKIVKDICVAIDNPNAGI
KSVRRMFRANNSTSITQSPPLVVVEFDTIDIRNEILTSSRKLYGKQEFKGIYIRPDRTPAEQTEFAALLKERYEANNDLK
KHGNLDNPFRFVIRNDRVRCVDVTETQDVNGTNKFIFAGESAARAARRAKFVIRNKSSERQHHN
>CR1-L3A_Croc_pol#LINE/CR1 1346-4237 [Crocodylidae]
MSTHLAQNQDVENKINQGTKGREEKKFFNCLYTNARSLGNKQEELELLIYEHKFDLVGITETWWEDSHDWNVKINGYNLF
RKDRVGKRGGGVALYVKNGITCFRVTDNSEANDLECLWINVLTDKAQDGVLVGVCYRPPNHTREQDDRLLKHLSIMCRGK
SCVITGDFNLSDICWRSHAASTKTSSEFLKIIDDNFLTQKVLHPTRGNSILDLILTDKEELITELKISGCLGASDHDLIT
FVMCKQNKVQTSNIYTWCFKRASFTKLKTIMSQISWEKEFKQKNVNDNWELFKNILLDAQKATIPQSRKKATLVKKPAWL
RGEVKAAIKNKKAIYNKWKKGEVDSNEYKLEARNCRKLIREAKGHKEKSMASRVKDNKKEFXKYIRNKRNPNNGIGPLLD
GNGRIVNNNAEKAEVFNKYFCSVFGKKPDDVXVSHDDDEILSIPTVTKEDVKQQLLKLDIFKSAGPDNLHPRVLKELAEE
LSGPLTLIFNKSWNTGEVPEDWKKANVVPIFKKGKRDDPGNYRPVSLTSIPGKIMERLIRDSINKELKEGNIINANQHGF
MENRSCQTNLISFDEITSLVDKGNSVDVIYLDFCKAFDLVPHDILIKKLERYKINMARVKWIKNWLTDRSQNVIVNGESS
SSGRVSSGVPQGSVLGPTLFNIFISDLEENIKSLLXKFADDTKIGGVVNNEEDRSLIQSDLDRLVSWAQANNMRFNTAKC
KVXHLGTKNAGHTYRMGDSILGSSDSEKDLGVTVDNQLNMSXQCDAVAKRANAILGCXNRGIXSRTREVIXPLYSALVRP
XLEYCVQFWXPHFKKDVXKLERVQRRATRMIKGLENMPYGERLKELDLFSLSKRRLRGDLIAVYKYLHGEQKSGNGGLFS
LADKGITRXNGRKLKLDKFRLXXRXNFXTVRVVKHWNXLPRXVVXSPSLEVFKXRLDAFLEDXLWFKQELIRGSPVACVS
RGSD
>CR1_Ele4_gag#LINE/CR1 726-1577  [Aedes aegypti]
MLSVCEQCANEFTGTPVKCMGFCSSLFCKKCSGMTDETQRLIDTNNHLVWMCFACCNILSKSRFHKSVASVNAANEKIID
ALKTEIKDSILQDIRTEIRDNFKTLVEAVPSTPLAIQPPPFRPSSRSKRQRDTDVDDDSTNGRPSKQPCATGTRYSEVGS
LAINPTSATPEFWLYLSGIQPDVEEDQVRHMVQESLATNDLKVVKLIPRNRDLRTLSFVSFKVGVSADLREKAMSADTWP
RGIRFREFEDHSLTRQGFWRPTSVPVITVPQTIIIPDPQQPSMG
>CR1_1b_Xt_pol#LINE/CR1 588-4582 via tfasty with CR1-D_pol, 1 frameshift and 1 stopcodon [Xenopus (silurana) tropicalis]
MSGSNIEGLTQCTACHMYAVVEQQFQSAYLCCGCERIATLEARVRALEEHVATLRSINNLERGLLLTEQELAGSDSMGGG
EQRKDDRAVSWVTVRKSSVGKRKREAAPGFAHPNRFARLCEEDGSVNSGLAVLDEADLSNSRETSFSSSGGEESRARPKQ
MVVIGDSIIRKVDRVICQADRFNRTVCCLPGARVRHVVDRVDTLLGGAGHDPAVLVHIGTNDKMNGRWGTLKSEFRDLGS
KIKQRSSNVIFSEILPVPRASLGRQRELRELNAWLKSWCRKEGFGFLEHWADFSLGYNLYSRDGLPPQWKGVCCARGENG
xEVGGVFKLDKGGVGELEFYGKISVDGAGGLAKGCGGGVRGAYSLSDKELPLQGKQSHICLSSNSPLANVNIRGRSSNLR
CMLANARSLSGKLGELQAIACIENYDLIGITETWWDDKCDWAANLNGYTLFRRDREIKKGGGVCLYVKSDLKPCNKDITN
ENVESLWVEISVGLKVTKKMIIGVCYKPPRIDEGDEAQLLLQMEEASKLGQVVIMGDFNYPDIDWSNGVAKSEKASRFVN
MLNDNFLFQAVQEPTRNDSILDLVXSNNNELISNICVGEHLGNSDHNMVSFEIMLQRQLYKGVTKTLNFRRADFASIRAS
LQCVNWERLFMGLDTEGKWNIFKTLLCRYTQQYIPLVSKERHRKAKPLWLNKSVSVEVGKKKRAFRAFKLAGTAETFIRY
KEANKACKKAIRQAKIEMERDIAARSKKNPKLFFNYVNSKKMKQEGVGTLLSRGGKLVDENGEKAEILNSYFSSVYTSEE
PDNEGFPXNMPSSSNLATDAWVTREEIQKRLEHVKVNKGPGPDGIHPRVLNELSAVIAKPLHLIFQDSLRSGMVPRDWRI
ANVVPLFKKGSRSQPENYRPVSLTSVVGKLLEGVIRDRVLEYIAVHNTISLCQHGFMRNRSCQTNLVAFYEEVSRNLDAG
MAVDVIYLDFAKAFDTVPHRRLMIKLRNIGLEHNICNWIENWLKDRVQRVVVNGTFSNWTSVVSGVPQGSVLGPLLFNLF
INDLEVGIDSTVSIFADDTKLCKTISSMQDAAALQSDLTKLENWAANWKMRFNVDKCKVMHFGRNNINANYLLNGSVLGX
SLMEKDLGVFVDNKLSNSRQCHSVATKANKVLSCIKKGIDSRDENIILPLYRSLVRPHLEYAVQFWAPVLKKDINELERV
QRRATKLVKGMEDLNYEVRLSRLGLFSLEKRRLRGDMITLYKYIRGDYRQMGDVLFSHKNNQRTRGHPFRLEERSFHLKQ
RRWFFTVRAVRLWNALPXDVVMADSVNAFKRGLDEFLXNQNIQGYCDTNIYS
>CR1-69_HM_pol#LINE/CR1 749-3769   [Hydra magnipapillata]
QSFYNCKNQKYFSHGSLTSLVIPKSLQKNHASSISKQRITAVNNKSIKKVICSKRSNFINSYNHLTTNSFNNFTVYLFNA
RSLANKLNDFFLYVESNKPALICVCETFFNDKLPNSMVCPKNYSIYRKDRVRIGGGVAIYCRNDVKSAIVSITQTDKDID
IICVDLIFGSSKLRLITCYRPPSYSLDDYIYLESMISIISNLCESVPQFVIVGDFNLPKIDWVNYVSPIEKCHNLFLTLV
NNLGMYQYVLEPTRENNILDLVLSNIISLLSNISVECPFSTSDHNSVFFYINTFNYYQPETNSESFYDFKNTDIIAFNSY
LSKISWDFDFSFVFTTEEYWNIFSNHLRKGIDRFVPIRTIYHNKKSRSYPKYIYKMLIRKSFLWKRWSITKTTLHKKAFI
QYASKCKKAISTHHKNVELKLVKENNLSKFFSYVNKNLNNPKKIYPLKTNSNFTTTNVEIAEVFNKHFGSVFTIDDGILP
KINTFVSEHIKMNFVDFSAKIVYQKLKNLKPSTSFGPDGIPNILLKQLAHIICIPLSYIFESSFTSSSLPKQWLQATVSP
IFKKGSTSDANNYRPISLTCTSCRVMESIVSSSIADYLNINNLITPNQHGFLSKRSTCTNLLESTNDWNKALDSNLITDV
VYIDFQKAFDSVPHPKLLKKLAMYGIIDNLLHWISAFLSNRYQRVLVGNSLSNPTCILSGVPQGSVLGPTLFLLFINDLP
SIVKDLNCSLMLYADDIKLYSSFKDADYSHDLAVAIYKVYLWSKKWQLKIANNKCFTHRIAPTSFCKDINYNYQLGDHNL
TWSTNPKDLGVTMDSYLNYSNHISNIVRASNIRGYLILKCFKSRDPRVIVKAYTTYIRPILEYCSPVWSPNRTKMNNTVE
RVQRRFTKRISNLNNVSYSSRLSILGLELLEIRRLKQDMITCYKILNNLVCLNKSSFFLFNNYIYTRGHNFKLRKLKCKL
DVRKHSFSLRVVNIWNNLPSDVVNAKNIKSFKIKINSIDFEKYCSG
>CR1-32_BF_pol#LINE/CR1 367-3150  [Branchiostoma floridae]
MFSIANDPPDLIVLTEVIPKAQVNPLRMCTIALDGYEIYTNFDPDELNLGPSGTRGIAIYFKKSLSLQVRVLDYGSVGFH
EQLFLNFGLGNQVSLIVGCVYRSPSSEPVDSTTKLCNLLSRVCKENAKHVVITGDFNIKEIDWCSGMSTVGTGHHGQLLL
DCLNDNFLTQHVMEPTRHRLNQQPSVLDLVITNEVMTIGNLQYAPGLGRGDHCCLTFSIDCVLDKTTESLPRRNFGKGNY
GKAKEDLSKVDWDEMLGDLDVTGAWSQFCGIVEKVVDDCIPLTKPKQKPNKLYMNRQAMRARKKKSRAWSKWAKSGKVYD
YVRYAKARNYLRSLTRQLCSSYERKLVKDLKSNPKVFWRYAKSRMSTRPKIASLVQPDGNIAESDYDKADVLNKYFASVF
TNEDMANIPSMSTKPGVKTLDRIMTSQEIVRDKLANLNPAKSAGPDDLHPSLLKELADQLAYPLTQIFNKSLSVGKLPSN
WKEAHVTPIHKKGSRTEPGNYRPVSLTSVVGKVLESIIRDILVDHFMVNNLFTDSQHGFVPKRSCTTQLLDVMNDWSLSL
ERGEPVDSVYLDFRKAFDSVPHQRLLVKLKAYGIDGTLLTWMRDFLHQRRQRVVINGSQSPWCEVTSGIPQGSVLGPTLF
VVYINDLPDVITSTVKIFADDSKIYRPICSHADQVALQRDLCAVEHWSEIWQLPFNAGKCKILHLGSKNQRAKYTLGGHE
LEQTRVEKDLGLAVDDQLKFHVNTAAAALKGNQVLGLVKRAFTNLDESSVPILYKCMVRPHLEYANVVWGPHFSTDQKII
ERVQHRATRLVPSLKGMPYSSRLRKLKLPTLKYRRERGDMIQLYKIMTKKERIDPESFFELANLDKTRGHCFKIKVPLAR
SNVRRQSFSARTVRLWNSLPEEVVTANSVNTFKTMLDKFWEHKRYKE
>CR1-26_CQ_pol#LINE/CR1 395-4114 [Culex quinquefasciatus]
MGRISILGTPNPTDLGPPAVEVHPRRPGSQVRSDVGVSQPATTGKYSPLRTLQSLQRTPIFSLDNTRITSSEIPLTSSGA
AVPSPSLSPVQSTRLPCESTSPGRAIESPMGASCPPDTATSSPIYHFGTFSARRCHQSRPGAGVGAEAEVSQMAHLGTYM
SCSEHLPSPNNHPHSSAGFVSPERAHQHLAMEFQAAAAHLAVSTTPGRVYLSTMGDPGPPATVEPPCHRRLFSRPGPVCS
EGNGVSQTASSGKYTSNESAVLSGSDLSLDSSTFPDAAAAVVQTEPVERRFLTVYYQNVRGLRTKTNETFLALCRCDYDV
IVFTETWLTEAIKDAELTKNYKLFRCDRNPESSSLLRGGGVLIAAKAKLECKAVELLNCESLEQTVIRLTLPLQTLFVCC
VYIRPVSDPATYATHAAAVQQVIDLSKESDSVLVVGDYNLPNLIWYHDDDTDSLLPVNASSEQEVTLVESMLPLGLTQVN
DLPNAFGKLLDLVFVSDNVSVELFEPPCPLLKVDQHHNPLLMQLEYRTALNDNTVEPDAVFDFKRCDYTTLNERILAVDW
LTFLDAPCVNSVTEMFYEKLFEIFNEVVPRKSVRICHRYKQPWWNDDLRLLRNRLRKATSRFLSTKTAWDKVVARNIEEE
YLNLQQESFQNYINDLQSTVKSNPSKFWTYVNAKKQTEQTPLDVSYRDVNSSSPEESASFFADFFKSVYNTNSTVYPDSH
LEGAPTSNISIPRPTLADDDILKVLSSVDPSKGPGPDGLPPVFVKSCANSLVVPVSVIFNKSLEHAIFPDIWKLASISPI
HKSGNVSKVENYRPISILSCLAKVLEKVVYDRLFPAVRRIISANQHGFMRNRSTTTNLLSFVSPTINVLESGGQVDAVYI
DFEKAFDKVPHTLTIKKLKKLGLPDWIVAWLHSYLTSRKAFVNLRVTRSDIFDIPSGVPQGSHLGPLIFILFVNELNTLT
GSSTLMYADDLKLYRTVKSHVDCLALQADVDTLLHWCDRNGMTAHAKKCKVLSFSRSRNPIISDYSMNGQQLDRVETFKD
LGVVVDSKLRFNQHIALTTAKAFAMLGFLKRSTKHFDDPYSLKSLFCSLVRSVLEYAVVVWAPFHETQVTRIERVQRAFV
RYAFRKLRWNDPLRLPPYEQRCALFNLPTLARRRVFIQRLLVFDVLRDNIDCSSIRELVHFYVPARQGLRNNPPLLSVPR
HRTVYGHHNPLDVCLRKFNDVHSCFDFIVSKNVFKSRISS
>CR1-44_BF_pol#LINE/CR1 3-2111 fragment [Branchiostoma floridae]
DWTKELEGMTTQEAFNTLQEKVMKVVEENVPTKRTGNTTKKSKPKWMTHEAQRKARKKFHAWLRYLNTKSKEDWKTYKEC
RNAATHAARQARRDFERSLAKEAKTNNKAFWSYVNSRRSVKSQVGDLKDTKGNFATKDKDKAEILNDQYHKTFTRESYDN
MPVFDPKPLQTPVLDKIEVTEEMVMDQLSQLRPDKSPGNDGLHPRILRELSHEIVVPLTKVYQLSLSNAVLPEQWTEASI
TPIFKKGEKSDPANYRPVSLTSVPCKMLERIISDKVIEHMRINNFTCEQQHGFSKGKSTVTNLLEALDVWTEALSHGLQV
DVIFLDYAKAFDTVPHERLLRKVESFGIRGKLLEWVRGFLTQRRQRVSVNGATSSWKRVESGVPQGSVLGPLLFMIFVSD
IPDTLQNFVSLFADDTKIYATVEDCAREGHTTCLQADLDQLQEWSRKMQMRFHPDKCKPMHLGKGNPGHKYTMIKTDGSV
HTLQCTKEEKDLGVLIDSKLSFSSHVQNQVNKANKVLGAIRHTFKYLDIDSFVLLYKSLIRPHLEYATVIWDPKTKRDKD
MVERVQRRATKLVPSISHLPYSQRLRALGLPTLLFRRKRADIILLYKITHGLVTCRTSNHCNLCSRAMLTPSLATSTRGH
SYKYQIQCSKGPRANFYPARVIPMWNKLSEQTVTSKSVNLFKSRLSAEWNTHKDLYEYEFSY
>CR1-50_HM_pol#LINE/CR1 889-3764 via tfasty with CR1-19_HM_pol, 1 frameshift and 2 stopcodons  [Hydra magnipapillata]
KAPLLPESITELNCIYLNATSLENKLDELNVVTSLHCPKIVGVSETWFKNNSIVNIPGYNIYRYDRIGDRRGGGVCLYIK
NSIDSYELVDTDFSISKIEQVWAVVYFGQDKYLVGCLYRPNYVVDMVDLDNIFKIARRYVDVNAFKDVLIMGDFNFPAIK
WSNGSIASISNESGIEHKFYKTLSDTFLYQHINIPTFQLTNGLPSNVLDLIFTTESGSVCAVDPGFVLGDINKGHLIIYF
KFVLKNNVKRLACSNFKFLYSKAKFDKISDFMSNIEWVKLYENKTVQDMYDELIYYTTEACNLFVPTIDISQIKSSTTPW
INNEIKQLIRRKRNLRYINCSHRWNDVKLIKEYKQLCKLLKTEIYNARVLFEKNLVLRSKLNPKLLYKYLNSTNSIKDPI
KAIRMPNGDLSHEPNKIVNCLNKHFQDVFTIEEKGDLPPFHLELNDVYKFEDIEPDDISFELVLSKLNSLKDNKSPGPDK
LCSIVLKNCAISFTLPLTLIFRESLKTSQLPIQFKSANVTPIHKKGDKTVASNYRPISLTSIPCKILESILRERIKKHLY
KNNLLTIQQHGFVKGKSCTTNLLETPDFISSCNSNGLPVDVVMLDFAKAFNSVPHKRLFAKLNAYGINGLALKWMEAFLN
NRRQRIVLGEFVSEWVEIFSGVPQGSVIGPLMFIIYINDLPSKLINKTKLFADDTRYCPRxLxTSDTSSLQRDLDVSFKW
TEDWLLKFNVDKCVVMHYGVNNKKNPLYINGIKLPESNSVKDLGVIFSKNLKWKDQVMSVTNNANNMLGRIKKSFARLDC
YLLKSLYVTFIRPFLEFSVPVWSPYQKGDCKVIEQVQRRATKLIKSIRCFSYEDRLKVLKLTTLTKRRERGDMIQLFKIM
NNVNITEHNLQTIQNHARGHCFKYYRETTKNLLRHNFFYNRSANLWNSLPLELVNSSSVNSFKAGFDCWTNNNLSIHLY
>CR1-47_BF_pol#LINE/CR1 3-1385 fragment [Branchiostoma floridae]
PISLLSIASKVMERCLYNAVFPKLYDKIHSLQHGFVKGRSTTTQLLEVYHQIGSVLDKGGQVDMLFLDFSKAFDSVPHIL
LTHKLQMFGFGGELLQWLNSYLTNRRQRVVVEGSLSEWRPVTSGVPQGSILGPLLFLLYINDLPSSATNSTVALFADDSK
CFKEIRNTDDCVKLQYDITSMYNWSTTWRLYFNLSKCKVLRLTRSRKPVMYSYDMNGTSLELVSRMPDLGVTAQFDLKWN
DHVVNTTARANSMLGFVKRTVGYTTSVDSRKSLYITLVRSMLEYSSPVWCPGSRKLISLIEGVQRRASKYILGAGHEHPD
YKSRLTSLGMLPLSYRREAADVLLFVKSIGNIYDSDIVKYVSFSSRGTRSFRANMATPFRSKTQQFATSYIPRLISIWNG
LDGNLRAMGRYVSQSSHITTFKRQLLKYLHNRFTHLYNTDTPCTWTSFCSCSTCFATRAR
>CR1_Ele7_pol#LINE/CR1 1204-5049  [Aedes aegypti]
ELIFVIPGRNCLSISEASDSPNTVPLFLPSFISRPGPVFGCGDEVFQAISAGKYSCKLNISLPLKCPTSSSLTSMHIYSC
SHLRHTNFSSMRNQAVDSIHHQASSLIKIVSTFLELPGCTPASLKEALNPLAAVELFLPAINSHPGPVGEYGEGVFRTST
AGKYTCNKDISSPVTSIVSSQPISSFMRTTSNFYDSPVPTRTISTFDQLPGCMPASLMEAPDPLITVENFPPASCSHSGP
VYEFGEGVFQPVLAGKYFHESTISLPDENASSSVLIRNDDNILLPRPTAHPVPVGPSPSSVFPIGNSTVRVLEGAGHENA
TETSKILMYYQNLGGMNSSLAEYQLAISDGCYDIYAISETWLNGNTSSNQLFDDRYSVFRQDRSPSNSDKSSGGGVLLAV
RSKFKSRRLVHPNIASVEQLWVAVTTTDATLYLCVIYFPPDRVNDNLLIENHIDSLNWIVSQLGPRDNIIVLGDFNLSAI
SWQQDSNGSFFPTTSRSSIGSASRALLDSYSTAGLKQKVGVVNENNRMLDLCFVSEELQNDCKIMQAPSPLVKTCKHHPA
LLMEIAVNPQLCFRNTLEDVRYDFGKADFNGMNNFLTSLDWDDILHNSDANLAASTLSGILLYAIGQFVPIKPSFKPPKP
IWSNPELKQLKRAKQAALRRHSKYRTDSTREMYVQANTEYKRLNDHLYNAHQDNLQRRLKHNPKSFWNYVNDQRKESGLP
STMSNGTFEADSTAGIADLFRTQFSSVFTDELVDPCVVDEATRIVPQLPISVQRFYVTDGMVKSAGKKLKSSTGSGPDGI
PSLVLKRCVDSLASPLASIFNLSLSTGIFPNCWKESYVFPVFKKGCKRLVSNYRGIAALSATSKLFELIVLRELVHSYAH
YISPQQHGFMAKRSTTTNLASFTSFVIRQIEDGQQVDAIYTDLSAAFDKMNHQIALAKFDKLGMDTQILSWLHSYLVDRS
MSVKIGDHVSLPFSVCSGVPQGSHIGPFLFLLYMNDVNFVLNCLKLSYADDLKLYYTIKKAEDALFLQQELEVFAEWCRI
NRMVLNVTKCSVISFGRKHALHHFGYNLNGVQLQRETTIKDLGILIDSKLTFKDHVAYVVSKASSQLGFLFRFAKKFKDI
YCLKALYCSIVRPILEYSSAVWSPYYQNEIQRIEAIQRKFIRFALRHLRWNNPLNLPSYRSRCKLINLDLLEDRRNVAKC
CFIGDLLQGNIDCPTLLSLVNINIPSRNLRSHSFLTISPARTNYGLHEPMRSMCRVFNQCYRVFDFNMSRVANKCNFRRI
LC
>CR1_Ele31_gag#LINE/CR1 379-1191  [Aedes aegypti]
MAKNCSKCSEAINGIDYVVCRGYCGAFFHMNACSGVTRALLNYFTTNKKNLFWMCDKCAELFENSHFRTISTNADQTSPL
NLLTTAITELRTEIKQINAKPKAQFSPAVGWPSLTERRTTKRPFEQVVARASENCRVGSKQPQANVVTVPVCQKEDNQFW
LYISRIRPDVTTEAVQAMVKANLNVDDDPTVVKLIPKEKDISTLTFVSFKIGLDPSMKPKALDPETWPEGLLFREFEDYG
AQKFRVPLKHRKPMTPSLSVSSPITPVMDLS
>CR1_Ele30_pol#LINE/CR1 1325-4189  [Aedes aegypti]
MVYYQNVRGLRTKIDDVFLAAHDCEFDAVIFTETGLDDCITSLQLFGTTYNVFRCDRCPRNSNKSRFGGVLIAVAEQYTS
CKIDTTSARNLEQISVSTNIKGKKLSLCAVYIPPDRSQDLSVINEHIASVQELCNNCSANETVLICGDFNRPRMRWVRND
TGIICGGSLLPPTSHTLLDGMEFLGLGQRNLETNLLGRTLDLVFCPLECEATVGGCSMPMLPVDSHHPPLAISLHTDVDE
ALSSTVGDRIAVRPLNYRLIDFPGLSDRLNNIDWTSLFASKEVDDMAECFCGEINRWLETNVPRVRPSFTPAWSSSRLRQ
LKRERNACQRKLQRRRTNANARIFHRAVNAYRHLNASLYKSYVLRMQSSLRSNPRGFWNFVNSKRKTSSIPSNVYFGNAT
ASSSLESCELFARHFASVFSSHVTSQQEAENVASNVPCDLVDFGIFVITPEMVVKAAKKLKSTFSPGPDGLPAVVIRRCI
TVLARPLSDIFNRSFEQAKFPDIWKQSFMCPIFKNGDRRNVVNYRGITSLSASSKVFEIIVSGAMLERTKNYISFDQHGF
MPGRSVTTNLLSFTSKCIASMEARAQMDVIYTDLKAAFDKIDHTILLCKLSRLGFSSQLVCWLNSYLFGRVLRVKLDNAV
STPFSNKSGVPQGSNLGPLLFALFFNDVALFFEDGSKLVYADDFKLFLEVRSIDDCLQLQSQLQVFVAWCTKNKLVISVA
KCYVITFHRTQRPIVFDYNIGGTILTRVSEVHDLGVQLDAKLMFDCQRSMVISKATQRLGFIFKIAKDFNDPHCLKALYC
SLVRPILENASVVWCPHQVSWCLRIERVQKRFVRMALRNLPWRDPVNLPPYPERCQLLGLDTLQRRRKIQQALIIAKLIN
GEIDSPELRGMLNFRVPSRSLRNTTLLEQRFHRTLFGYNEPMAACIRTFSMVEDLFDFDENIDKFAGKINRSRLF
>CR1_Ele33_gag#LINE/CR1 392-1225  [Aedes aegypti]
MAKNCGTCSKAINGIDVVVCRGYCGGFFHLNECSGVTRAMQSYFTSNRKNLFWMCDNCAELFENSHFRVISNQADEKSPL
NSLASAITELRTEIRQLHAKPVAYPSPAESPRWPSFDQRRGTKRPRIIETNVRAQDSCRVGSKKAEENVVSVAICKSEAD
NRFWLYLSKIRPDVTTEAVCEMTKANLNMENDPIVVKLVPKGKQIESLSFVSFKIGLDPLLKRKALDPETWPEGLLFREF
VDYSASKFRSTLNMNTRMTPLLQPQTPVSSVTPVMDLS
>L3_gag#LINE/CR1 105-1097 [Mammalia]
MDTEGTVPVTCRVCAMFVFLPEAXTNYVCYKCKLVSLLEEKVKGLEERLSTLRLIREDEGFLXRMEEIIQEGXQKEKDSE
EAEGNQNQRQEVGEWKNVTQRKRRKRRNSAPLELXNRXEALPTEGESGPSEEEAASHAPRNNKEDSQALAGARNPVXAPR
KKRRXVVVGDSPLRDTEAAVCRPDVANQEVCCLPGACIRDVTESLPRLIKPADRYPLLLIHVGTNDTVRRNLECISSDFE
VLGRKLKDLGAQVVFSSLLPVEGRDFGRERRIWEVNSWLRRWCRRTGFGFLDHGLXYQNDGLLARDGVHLTKTGKNVFXX
RLADLIKRTLN
>CR1_Ele39_gag#LINE/CR1 360-1259  [Aedes aegypti]
MTAITACDRCAKTVKRNENFIECMGFCNNVVHMKCDNLNIEFIATIRERPNLFWMCDECTKLMKVTRFKSVVSSLGCAIS
TVIENQMTGISELKAEISKNNQQVAEVIVENNNQVAQLANIVNASTPVPAPNRERPSKRRREDTETSNAITLGTRNIASD
IAVAVKPAANLFWMYLSRFHPSVKEDVVENLAREGLQTREPLKVVSLVKKGADLSSMNFISFKVGVPVELKDVALNPNTW
PEGILFREFEGQSKNSVWLPPAMSTTTRDGTPFGTPAPVPTPTFDAPISITIPTTISDEA
>CR1_Ele24_gag#LINE/CR1 354-1184  [Aedes aegypti]
MDSKCYHCAKQVKTIEFLQCGLCNQAVHIKCVGLKRQDMEFVNEHKNVIWFCDKCIDQLQHVKDNPIKSTADVVSEISDS
IKVSLDELKTELRETKELTKSLAEKKQPVESSGFYRNRPWPSIKRTREAATRDTPKSRPDVKLLSGTKSVEADNIIVETI
AKPAEKFWIYLSRIARHVTEADISELVKTCLQIKDEVVVRKLVRKDADLKQFAFISFKVGINKDLRDTALDPSIWPKGIL
FREFENLQSERDFWGPTKVPRIDDRTPAMETSPNLLQ
>CR1_Ele9_pol#LINE/CR1 1791-4844  [Aedes aegypti]
ILLSRLTKFSKIKTHSLEADITDVSTTSTLHTLPDAHSNVSITNNPKISLSSQQNATEILVYCQNFNRMKSSAKMKEIHQ
KLLSSSFNIILGTETSWDESVRSEEIFGNNFNVFRHDRNLQHCNKKSGGGVLIAINADFTSEEIETFKHKEFENVWAKAL
INGETHIFSSVYFPPEHANKHSFELFFKIVETIISNMEPEVKLHIYGDFNQRNADFITDNENESLLLPVVGEDSTLQFLF
DKTSYFGLNQINHVKNQQNSYLDLLFTNCTEDFCVYTSLSPLWKNEVFHTAIEYSIFIHKTSLPSDWEYEEVPEYNKANY
XEAKRRLCTINWQHIISIDGNVDTEVDKFHSIIQQIINETVPTRRKRRIQNNKLPVWFSPHLKNLKNKKQKAHKLYKKEN
TATNLQNYHDTCNQLNSAINSAHEEYNRKVESEVKSCPKNFFNYVNTQLKSSNFPSRMHFDGNVGENSSDICNLFADFFQ
EVYTTYSEEDRDRNFFSFFPEISNSISIEKLSQQEILSALKNLDATKGAGPDGIAPVFFKNLSEELTLPLERLFNMSLNN
GKFPVAWKSSYLVPVFKSGTKSDIRNYRGIAIISCIPKLFESLVNDKIFQQVKNQITCRQHGFFKGRSTSSNLLEFVSFI
LNAMDNGKHVEALYTDFSKAFDRIDIPLLIFKLQKIGMEPGLLSWIQSYLSHRKQIVRFQNKLSAPISVTSGVPQGSHLG
PLLFILYVNDISFLLRKIKFLIYADDMKLFMEVSNSSEAEEFQNDINLFFTWCQKSLLQLNIKKCNSIAFSRKYVTPPIE
VFLGNQVVQKCKIVRDLGVILDSKLTFVEHYNSIINKANSMLGFIKRFSNNFQDPYTIKLLYTTYVRPILEYCHLVWNPY
HVVHEERIESVQKQFLLYALRKLNWTVLPLPSYEARCMLINLETLKQRREFAMILFINNIISNRVDSAALLSQLNFYTPS
RHLRTRKLFSEKSCRTHYAQNGPINRMMRQYNVHCEFIGITMSKEQLKTQLKNNRSNP
>CR1_Ele8_pol#LINE/CR1 856-4596  [Aedes aegypti]
IEDIQPATVFDIYDATLLPTHHHQPPGRTLTASLMEAPDLLNTVEPLLPAINSRPGPVFETVEGVFQNRNSGKYVFDTNC
SPPEKHLNSSHYATCTTLSSTLFHQPPGRKLASSLMGAPILLNTVEPLQPAFNSRPGPVFETEEGVFQNRNSGKYDFDTN
CSLPETPLDSSHNASNLTRSSTLQYHPPGRTLASSLMEASNPLNTVEPLQPAFNSRPGPVFETGEGVFQNHHKCKYDIHT
NSALPVILPASSLSSDGGQDCLFQDVARVPTSATTVPFAQHISAGSNRSDVHHSIRGYSSSESHSELRVYYQNVRGLRTK
IDQFFVAVADAEYDIIVLTETWLDDCIFSPQLFGNAYSVYRTDRSPLNSRKTRGGGVLIAVSSCLQSCIDPSSVSSSLEQ
VWVKVRLRGFAVSIGVLYLPPDRKNDLLDIQQHLESVESVMSGLEQHDFAILFGDYNHPEMLWSPSEDGGFKIDSGRTSL
SASSSALYDGFCFHGLTQVNSIKNAYDRILDLVLVNERTLPVCRLSQAVESLVVPDTAHPALEIGIRITTPVKFEHVLEC
RRFDFHRADYDVLSNELASIDWQFLDSVRSLNDMVDTFSNEVLRIIERHVPVQRPPLKPPWTNPYLRKLKKRRGSALRKY
RRSRVPLLKRRFVLASNKYVSYNRLSYVRYVDRTQRNLRLYPKRFWSFVKSKRKEDGLPSVMHYEESTVETAAEKCNLFA
QHFKAAFSDVDVSSSQVAEALRNTPSESIDFGIFEITEDHVLEALRKLKYSASPGPDGIPSCLLKRCSAALLVPLMKLFN
CSLQRGTFPAAWKTSLLSPIFKKGDKCDIANYRGITSLTACSKVFEIIVNNALFESCKNYISTAQHGFFPKRSVNTNLVE
FTSLCIRSMDAGKQVDVIYTDFKSAFDRVNHAILLRKLEKLGMSPGLVRWFESYLSGRSMKVRIGAAHSDSFAIPSGVPQ
GSNLGPLLFSLFINDVAFIVPRGERVLYADDVKIFMVVNSVEDCLALQATLNSFECWSRRNKLELCVRKCYSITFSRKHN
PIHFDYSLSGQTLERKNEVKDLGVTLDNELTFRPHYEDVLSRANKQLGFIFKIAEGFSDPLCFKSLYCALVRSILEAAVV
VWCPYNRVWIDRFEAVQRKFVRLALRNLPWRDRIHLPPYEHRCMLLGLDTLESRRVSMQSSFIGKIFKGEIDAPAILHEL
RIYVPERPLRRRNFLNMDARNSRYGQHDPIRYMVARFNEVFEQFDFI
>CR1_Ele13_pol#LINE/CR1 1493-4399  [Aedes aegypti]
AGNEQPDSHSIDVIPVQIPSVHDATIPVTVYYQNVRGLRTKTNALHLSLSSCDYDIIAFTETWLRDDISNAELSSNYSLY
RCDRSSSTSNLTRGGGVLIGVRKSLQCSFVDVPNACKLEQVAVKVSLANLSMYICCIYVRPNSDPEIYRQHSRSVRYLLD
LANDTDMVVVLGDYNLPNLSWNFDDDLNAYLPANASSEHEITLTQSILDTGLSQVNDITNCNGRLLDLSFVSDTQKIESL
EPPNSLLPIDAHHRPFVLKCDISSVTDTQDNIFCYDFKRCDVEVLNDALARVDWSSLLTDCHIDTAVSRFYETINNIIAE
LVPLKKIWRTHHKCPWWNRELRTMRNRLRKFRKKYFKHRSADNKQSLQRMENLYDELRTTAFRNYIRRLESDFKHDPFSF
WSFVKSRKHGQGVPSDMVYRSCKASSFRDTANLFADFFSTVYSNQQFNAVQTASNSSVHLPRLEVSTNDVHTALSDVDPT
KGAGPDRLPPVFFKKCASSLSLPVSIIFNKSLLDGIFPEAWKIASITPIHKSGSIHDVENYRPISILNCLGKVLEKMVHE
VLYRSVRHVISDSQHGFMKNRSTTTNLMTFANKLTKRIEKRQQVDAVYIDFSKAFDKVPHTLAVEKMRHIGLPDWIINWT
SSYLTNRKSYVKISDAFSDTFSVPSGVPQGSHLGPLIFIIFVNDICSLLRCDCLMFADDLKIYRTVLSPLDCCALQEDLN
IVLDWCGRNGMQVNISKCKVISYSRQRSPFFFPYRLDSEQLERVDKIRDLGVVIDSKVRFNEHISIVTAKSYALLGFIRR
NTAAFDDVYALKTLFCSLVRSTLEYAVQVWAPYHNEQCHRIESVQKSFLRYALRRLPWSNPIELPAYEDRCQLIDIETLA
NRRKKLRRLFVFDLIMNRIDCNYLLGNICFYAPVRTLRNRSILWIPTRRTQYAFFDPFDDSCRLFNDVSDKFDLNISKNV
FASRIRNLD
>CR1_Ele23_pol#LINE/CR1 2146-6159  [Aedes aegypti]
CPVIHQPPGRTXASSLLEASDPPITVEFFLPATCSRPGPVYGVFRISNAGKFTVLPNHPCPEVLSASRPYPSNVLLRPSF
AWIPGRTPDLSFMEASNPPNTVEPFPPAIHSRPGPVFGIGGEVFQNTSAGKYFTSTHNTCSETFITSRTRGLSVSGLGFT
PILGSMEASHPPIKIQSSLPTFNRGPGLVLGSKGSSLASFLVVSDPHQPERTACSIEEVPEPLDPVAPFVSSHHSRSGPV
VEYGDGIFRPPIAGKYQTLWNNSLPDMPLRFSVPHGSIDSLNNIRERINCTSHPLLGPMFDASLQPERTACSTKEVPKPL
GSVALAGSGHHSRSGPAAECGDGGFRPFTSGKSPSDGNISSTDARSCFSKHXTPNTLRIYYQNVRGLRTKIDDFFLAVSE
NEYDIIILTETWLNDVIYSAQLFGDHYRVYRNDRSSVNSCKSRGGGVLIAISSNFNSFREPASVHDSIEQLWVRVDMHQV
IVSIGVLYLPPDRKNNLNDIRNHVDSIGSVISRLGPNDLALQFGDYNQSTISWTSSETGPPSIDLDRSCLSVASSALFDG
FNLHGLTQFNGIKNTRGRVLDFVLLNDAALPTCTVRRALEPLVPIDDSHPPIEVDVCCLAPVSFEPEFDATCLDFRKADY
TVLNAALLSVDWSFLNSADNVDDAVEYFTNSVNRIVASHVPVIRPAPKPIWSNNRLRSLKRRRSAALRRYCNHRSAYLKQ
QFNTISREYREYNKLSYLRYTTRTQQNLRSNPKKFWAFVRSKRKEDGLPTSMFYGSNTASSAAEKCELFAAQFSAAFNDS
AATPSQVEDAVHDTPIDVLNFTTFRIDAENVTKAIRKLKSSYSAGPDGIPPALLKRCLPALHEPLAVIYNLSFQREQFPS
RWKHSFLFPIYKKGDKRDVSNYRGITSLSACSKVFEIIVNDVLFNCCSHYISIDQHGFFPKRSVTSNLAQFVSTCLQAMD
DGKQVDAVYLDLKAAFDRVDHRILLKKLERIGISQDCIEWFRSYLTGRSLCVKIGSCHSTHFRNVSGVPQGSNLGPLLFS
IFVNDVSLILPPGVKLFYADDAKLYVVVNCIEDCIQLQTLLCKFERWCVHNCLTLSIEKCQVITFSRKRKPITFQYSLSD
KFLERVQRVRDLGVILDEKLTFRFHYDDIISRANRQLGFIMKVTTDFQDPLCLKALYCALVRSILEFADVVWCPFQTTWI
SRIESVQRKFVRFALRTLPWRNDQHLTSYHDRCQLLGIDTLENRRRIAQAMYVVKLLNGTIDSSALLARINFNAPERSLR
RHSFLRLEGRNSRYGQHDPIRFMSNTFNSVAHLFDFNMPVSAVQQRFSSHFRTNQADQ
>CR1_Ele18_pola#LINE/CR1 1617-4628  [Aedes aegypti]
AINSAVVSRIEGGSPTVDHNVINHSPNATITVSHSTPTTAPSPIADRYTPRSSNTPLTVYYQNVGGMRSKTNDFFLATAS
CEYDVIVLTETWLRSDVSNSELSSDYNIFRCDRSSASCHFSRGGGVLIAVKKAISSLPVRLERCNSLEQIVVKLRLQSKS
VYVCGIYLRPNSDPDKYAAHADSVQQIMQKTSDGDSVLIIGDYNLPHLHWAYDDDLDSHLPTNASSEQELVFTENMIASG
LLQICDVRNSNDRLLDLAFVSNSSEVELFEVPFSILPPDRHHKPFVLRLFTSELEASHAVSAQHDFNFNRCNYNAVIEEL
SLFRWEELFQETDVNAAVANFYNVVFGVIRRHTPLRRSSPRRPNSLPWWNADLRRRRNVLRKVRRRFLQHRSEENRSLLR
RLEAEYNECVSSSFREYIFRIEDEVKADPSVFWRFFKERKGAQSLPSEMSFGGITSHSPTESVELFADFFKSVYNPSSPL
ISADALDLLPSFDIHFPCPTFSIADVTEALNAIDSSKGPGSDKLPPVFIKRCAEVLAIPVCRLFNLSLTEAIFPDAWKLS
AITPIHKAGNLHKIENYRPISILCCLAKTFERLIHDRMYSAAKPLISQYQHGFMKNRSTTTNLMAYVSSLNFSMEKRFQV
DSIYVDFSKAFDKVPHDLTLRKLDRLGFPDWFINWLRSYLRDRTAYVNLKSVESTRFPTPSGVPQGSHLGPLIFIIFVND
LIDRINSHRLMYADDLKIYRIISSSIDCAALQQDIDTVSSWCVLNGMEMNAIKCKVISFTKSRAQMRFDYSANGTLLDRV
KSIKDLGVVMDEKLNFNEHVAATTAKAFAVLGFIRRNASEFRDPYALKSAYCSLVRSILEYAVQVWAPYHETQIARIERV
QRCFVRYALRRLPWSNPIVLPAYDSRRQLIGLESLRHRRVYLQRMFAYDVISSRIDCPELLQQANFFVPARLLRQRSLIR
ISRHRTVFGQNHPLEKCFNLLNDVDIFDFTIDRNRFKNIVRQIY
>Mariner-6_DBp_tp#DNA/TcMar-Tc1 209-1304 via genewise with Tc1_Ele13, 1 intron (970:1040), 1 frameshift. [Drosophila bipectinata]
MPKQKQFTDRNKEKIILLAEQNVSNRQISAETHFNESPVRRFLKKYRETGKVKRKKXTGNKKCTTSREDRFIMRTSLQDR
FKTAVQIRxEVQEQFSKDISERTVQRRLNSMGMLARSPAKKPLLNPRMKKNRLNWAKDKENWTASDWSRVLFSDESKFNL
IGSDGILKVRRRRGERYSENCCIATVKHSPYVMVWGCISKYKTESILMVQGMVNAEKYKEIILSGVVPSIESISEEEQEL
ICRDDSAPCHRARSITNLKEELGIKSLDWPGNSPDLNPIENVWAYMGAKIRKRKPKTMEDLKQVIEKVWIHDITKEYxCS
IYDSMPNRVKSVIKAKGGITKY
>Sola2-1_SP#DNA/Sola 1536-3581 [Strongylocentrotus purpuratus]
MLKFTKKEKQRHYIEKMKRMGKYEEYLKKKAAAMKRCREKQKLRERTLPKYARKQLERETKEATKKRVAKHRKLKKERKA
EAEAEASHGPFKSAMALAKATARAHRIMDRVLPDTPKRRIVVSRKLYEKEAKQGHELPSASAEKRKTGPPKVSEDTVKVI
EDFYERDNVSRQAPGRKDVVTIWNADGKKKMQARHLTASIKETYAFFCEIYPEVHVGKSKFAECRPKHVLLSQKLPHNVC
LCRYHENAINAFTALHKAQPEFPAYTRDLPALLLCKQPSRECWMNECAECKDGAGFSKAFSFEGSLNSPCSWLQWETDKD
GRMMKIQEEGTVGELVQHITAILPQFLQHCYVKREQASAYNAQREKVSPESHDTHSALLQVDFSENFTCVAQDEVQSAHW
NQRQVSLFTAALWYSGSLHSHILASDDLTHSKETIIAYLDVLLGYLPDTVTSISIWSDGPASQFKNRFVAAALCTLQEAH
KIQIKRNFFSTSHGKGPVDGIGGSAKRFVMQRVLSRQDIVADASSFVLAASFMENVCVTEVKSTEIAKRNEKLKLKDVFI
QAKPITGIGKMHFLKVVKDEVVSHILTKDNRADKDDVVVTQSGSKAIVVGDWYVVEYEGKKFPGEVVGFTRKGEFQVSVM
EPVGKYWKWPTKKDAIFYMESKMITKLAPPEVVNNRGHFKF
>Sola1-1_PI#DNA/Sola 179-2551 1 frameshift (1385) [Phytophthora infestans] 
MQCPETESNTTAPAPAVAVPVPPPAPPVLVNAEEHGPHRATKQPADTRAHTNTATADLTSIAQPTAPRVALPSATVPQQE
GSPASDEADEGSEDEQESDEEADDSDDEDWSDDNEDEEEDEEASTGESGVSDAAEEEEDISINLIEVSLQQTVAGLIQAD
KCDRRCLQGKAQELEWLVCSISQMTKSEKLTSLYTMLGVLMQTDTVERHRGDGKREKFHYYLPLAGRVCRPMFAKCLGVT
PLTIQRYKKRVREGNIAAKAHGNTLNKHASVIDLVWLVKWFKEFSAEVGEVVPVRVRLQKTANGTVKKYYSSEMYTLLPP
TFTWDAIYDEMHTYVEEIRIRVREPAKSTMRQLLTLHCPNIRIRSGRSNVCDLCSIYQSRMRGGATAEQTEELGKHTLSA
REXEVILDLGYEYHFVLLAISKVDTNIILFCWCICRQEYNRDKALVKTTEGKDVAVIVMDYSQNLTAPSVTSTPSQWYFC
SLVSVSVFGIYYENECKQTNYIYDESVGGKGSEQISSTLQHFIDNVLVPAGKKRLVIYADNCSGQNKNNYVIKFLLAQAH
MEVFESVDYKFFVKGHTKNSCDRGFGHIRKHLARTDCWTLGQIVREVKEAASSNETVHISRDDGFFKSYKPLLTELYKKL
LGVQQFQIFIMDSTKPGVVICKKGPTSIAVEKDLRRKLDGHLTERHKVTRMFSSYLETMPPPPRNAEKIDQMHRTIRPYV
PDEYQSDAIYAAPSKQQGDSAKAAKQARREHRAAMAVTAKENQDKRGRQDDKDQTRNTKKRKAAYTGDAVV
>Sola2-2_HM#DNA/Sola 1540-3882 [Hydra magnipapillata]
LNDYIKDKVFFIYLFSVLSYIFLESVRVISAAVAKEFDLIPGYKLCTECRKILHLRKQEHESDSCKNQDNDFNGIHISKE
NFNLSINTFGCSPLKLVAYKDRVSYAKRKINKIHTATKKKIATVLDVSPDLINDEPKTKELCCKSKQDLDSLMELIKAKF
DISSKPEKLKLLTLVPESWNINYTENYFSASQRMIKTARHLKQMHGIMAEPSKKEGRSISEKVKNLVHEFYQSDEYSRMC
PGKKQYVSIQVDGKRQHFQKRLLLLNIKELYLEFVKISLDVKIGFSKFCELRPKWCIPVGGASGLHSVCVCEYHQNAKLL
ALKIPDISDYKNLLTLVVCDLTNRDCMLHCCDNCPDNDTLKEYLTTLFDKHSIEEINFNQWQKANKKHDIVPVTLPVDDF
IEKACQQIDQLRDHHYIAKNQAAYLQHLKITLASNHILILLDFAENYSFLIQDAVQGFHWNNSQATLHPFVIYFMEENKI
KCKSICIISDNLQHNTNSVHCFIHEVLKHLKNLIPYFNHCIYFSDGASSQYKNYKNLSNLCHHKQDHDVSAEWHFFATSH
GKSACDGVGGTVKRLVARASLQSLVDPINSSKKMYDWCRQNIDGIHFQHISNDAVTLHCMKFKLEERYATCSTIPGTRNH
HCFIPQSLTTLQMRRVSFDNVFTNVNISTMQQNYTIPLASLSPGIYIACVYDGKWFLGNIVEISEENQDILIKFMKQSIS
SNTFTWPHREDICWVPIMHVLCKISSLKVQSATGRCYELSAQEKTEIIHLYNRMFNNEII
>Sola3-1_BF#DNA/Sola 2079-7153 Via genewise with Sola3-3_BF, 5 introns (2485:3343, 3553:3660, 4532:4894, 5023:5230, 6252:6326) [Branchiostoma floridae]
MSCSLAEYAGGRCGANPKARKEGESIIPLIQCTKDISYHLKTFSVPRTVQNEHELILARAGIFTLPDNVAVMTACPKHRG
VLGIYWCRSTEKCGMPDQLSNHSRWRARRKGTRGIGFFQSRKIQELTKQLVPVGTAICSECRNSIGGEEELSDVKEETTP
LDVQEHRSSGLGVQEPVPSTSGGHGVQEPVPSASGLDKALQRLSLEETQDSPSSSLSMGSPSAERSLYTVSSQSTGNGGS
SVPEPTHLLEQLLQASGSHVDKVQVLTVPWAEASERSQRLHLQQASEAVSTVLQVLAPGDAYSLWKYLRESKVTDVALGM
GGSAIEMELLNSLVECYQCASQSFTRRQILSIMADKYSFPDLEKLLPGLTRYQVTSARQHAMQYGRGAPIPPSVGTRMRV
DPGKLDHFIAFATSAHVVQDLPFGEKVLKLSSGESLNVPNTIRAMIPERIIAQYQQYCTETHFLPMGKRTLQRVLSACSA
SVRTSLQGLDYFTAEGSRAFEDIDGIVGKLPEQLGQDWAKKQTAILRSSKRYLKGDYKVHVSQEASVAEHCRQYALSDGT
DNHTTTCSHQHVEACEACDSLQQLFDSLEESFTDYTFPTSEEHDDMRFRLDQAKQDINAWQCHQLRSINQDEAWHVLLDN
MDDTSVLLVMDWAMKFLPRKYRESQTDWFGKRGIPWHITVAHQQGTSSIQVETFIHLFQTCKQDSNSVVSILQHIAQQLK
KELPDLQSIYLRSDNAGCYHNTLILQAARHINETAGVTIRRVDYCDPQGGKGSCDRQAATVKSHIKTWINEGHNVETAEE
FKIAVESRGGIPGVRIFLCEVGAAVAATSMKLDGITKLNNFEFSDAGLRVWRAYNIGKGNLIPWPRLPAIEPPLLKIVME
SDSDEDAASHETMQPSLGSLFPCPEESCVKVYQTCKGLEAHVAVGKHKRRLERETLLDKAKLKYAEKLAQGPSEVPHVEP
SLEVNRTTPCPQQGWALRSPRKAVRFSHKQKDYLDKRFRLGQSTGRKSDPITVSKEMRHARDTQGQRLFQVQDFLTGQQV
SSYFSRLAAQRRKPSEDSEEEEEQQDPAVIESSNSRIQEEIISNVQLCHPVLYDTYNLCDLAKIGGLYEIGIALLKSICE
LFDVDVSSITDRRRKAAFVAKIKEYLSCCPCSK
>Sola2-3_DPu_tp#DNA/Sola 1124-4215 via genewise with Sola2-5_HM#DNA/Sola, 1 intron (1606:2281), 4 frameshifts and 1 stopcodon  [Daphnia pulex]
MKSITSICLHHKTTYTNHFRVYLLxKKSNKCSNPLGIHLPKKRPNVSCSKTITSNFCEXISSKRSDIHVYPGQQLCVTCY
KQLLQISNENEVKLSTTSESSSKVGDLESVLQEIVSDNAFLSRIIKHKFRFTYQWNICVFVLFGTQSTLQENIRHDKTYL
TLHLLDYTSQMCEIKQKCIELKMEGKVKEVISFFTLAPVSWSKEVTADXFSVTVSEVKRARLLKQEKGILAVPDPKRGRK
ISPEEIDIVEEFYLSDEFSRLMPGMNDYLPDCKMEXKKTKVQKRLLLLNIEELFFKFKEYSLNKLCMKCCSNSKFYELQP
KHVIEVGAAGTHNVCVCERHQNMKLMLDAIHGKTEKYYLMNLIVCDVHYYECMLKICVNCPGTNALLEYLMTTIPNDSII
KFKXWESTNCTMLHNIELPSNEFVTLFFAKIDKLKSHHFISKSQSRFSRELKSNFPLNKCLLQGDFTQNYSMLSQDSTQS
SLVPPPPQCTLHTFIAYINVYGKIISHSMCVFSNDMTHNTVAVHTFLKPVIKQIFLICPTLEKIIHFTDGAASLYKKFKN
FSNLLCHLEDFKVAGEWHFFAASHGKGPCDGIGGTLKRLARRASLQETANIQTPESLYNWCHTNVTNIHSFYEPSSEIEE
TEKLLENRFKSAKPIRGTQSFHSFVPVDAYSLEARVILCSDTFKSFVVIPLPTFLSFNFQDVQVNSVIAVAYKDGKWYLS
NVVEKNDAAFEFKVHFYKPSGEDSRTTGFKLSKAENTAIVPIKNAIQITKSFMRSSRRDRSFKILSTEDDEIEIKFSNLM
ANGVEL
>Pokey_DP_tp#DNA/PiggyBac Translated with one intron: 3957-5377, 5444-6077 (using GenScan and similarity to 25777744_HSgene) Contains gi|21885465|gb|AAM76342.1| putative transposase [Daphnia pulicaria]
MQKKADAKKVAQHKAANRNWKECKVWGDVGRQSRADDDSPRPQFQERAIQFAPLEEPGPVLSQFNRFSNPLGVFKSMLGG
EDTLYLLREATNDYIAEFWSSRKTPPSRKVGGKPEGRLIGPRLPAGGFVTDHELVAFFGIQFLIGYHRLPELSMFWEQQP
DAGLGLGIIQQAMTRERFKFISKHIACASPWDDVDPNSDDPDQEPERPDPIRKIRPLVKRLNERYHACRKPPRGQSIDES
MVKFKGRSVLRQTMKNKPIKSGFKIWSRCCHRGYTYKFEIYQGARFGEKQGRSRNNEAVERVVVDLCQPLTDQGFVVAFD
RFFTSIALLDKLRENGVNAVGTILPSRVNQPIMTKNESNLRPDEFAAKFGGEPGTCRKGIFVWRDTKAFRVASNYHGSNL
VKVRRKQRDGSFKTKSCPKAIDDYVNNMGGVDTANQLRSYYERDRKAKKWWHRLLYSLLETCLVNSWICFNDMVEENYLE
NFEAPMTFLEFKRNVTMGLLSHALNENKNQAGRAGRMMPTIHPSAEPGAKRRKSRLSVRDDIRFTGERQVRVVPGNDKNK
IGIKTILKCKQCNVFLCLGKKRNCFVEFHDDNYTQSEEEAPLDEVEAVYSASEESDGQASDHEPTNKECSSSSADSDELE
XSNRRXGYXIDDYDDFQDRDGFVIDEYDEFQQ
>Looper_tp#DNA/PiggyBac 573-1396 via tfasty with IFP2_tp, 1 frameshift. [Eutheria]
MAKRRKLTEEDVSQLLDESEDECKETDSSTLDSNDDGEIDHISEISDYESSDDDILDEFSQTQESMSEQYISKDKKEIWY
SHPVSHSTGRTSSRNILRQEPGPSRFAKRTCDSILSSFMMFVHQNLLDTVRKWTNAEGRCVYKGDWKEIDDVEMKKFIGL
IILIGVYKSKNENVLQLWSKEDGRPLFNKIMSRQRFSKVLRFDDASARRTRSNDKLEPIRDVFEIWNQYLQDGYVPGSCM
TVDEQLVAFKGRCPFRVYIPSKPGKYGIKIWVCYV
>25777744_HSgene#DNA/PiggyBac gi|25777744|ref|NP_736609.1| PiggyBac transposable element derived 3 [Homo sapiens]
MPRTLSLHEITDLLETDDSIEASAIVIQPPENATAPVSDEESGDEEGGTINNLPGSLLHTAAYLIQDGSDAESDSDDPSY
APKDDSPDEVPSTFTVQQPPPSRRRKMTKILCKWKKADLTVQPVAGRVTAPPNDFFTVMRTPTEILELFLDDEVIELIVK
YSNLYACSKGVHLGLTSSEFKCFLGIIFLSGYVSVPRRRMFWEQRTDVHNVLVSAAMRRDRFETIFSNLHVADNANLDPV
DKFSKLRPLISKLNERCMKFVPNETYFSFDEFMVPYFGRHGCKQFIRGKPIRFGYKFWCGATCLGYICWFQPYQGKNPNT
KHEEYGVGASLVLQFSEALTEAHPGQYHFVFNNFFTSIALLDKLSSMGHQATGTVRKDHIDKVPLESDVALKKKERGTFD
YRIDGKGNIVCRWNDNSVVTVASSGAGIHPLCLVSRYSQKLKKKIQVQQPNMIKVYNQFMGGVDRADENIDKYRASIRGK
KWYSSPLLFCFELVLQNAWQLHKTYDEKPVDFLEFRRRVVCHYLETHGHPPEPGQKGRPQKRNIDSRYDGINHVIVKQGK
QTRCAECHKNTTFRCEKCDVALHVKCSVEYHTE
>PiggyB2_SM#DNA/PiggyBac 458-2311 [Schmidtea mediterranea]
MARKRQTSQDIRNLFESIIDSDDEELANDNFDSDFSDFDIATDEAAVEMQNIETDEEQEVQNIEAAEEAEVEEEGIWYYA
QNKKYKRKWRASPPNVTRVRDFQILRERQGISVETAQNINTHLAAFKKLLPETLINVIVAETNRKARHFYTINSNTARIW
YDTNSNEIYALIGILIYAGAHKNWDERLNELYHLDNRPFYRAAMSLQRVQQLLRFLRFDNYQTRAERLKEDKLAAFRDVW
NMFLANIKGPYKPSSFLTIDEQLVLTRGRCSFRQYIPSKPGKYGIKIFWICDALNSYPLKAEIYVGKQPNELRAVDYALN
LVHRLSAPYINKGRTITMDNFFTSCPLAEQMLQKKTTIIGTIRANKPDLPKEFTNKAEIKNRVVNSSKFCFDDHLTLVSY
VPKPNKNVLLLSTLHNDDIVDLDSNKPNIILDYNKTKGGVDTLDKLVRTYTCKRKTKRWPMVLFFNMIDITGIAAYNLYK
CANPQLFIQRKSNERKIFLKELAMQLVKDHILNRISNPRAMKKNVKIAVQQIGYNIINLRQSSTAEGTAANRSVSKRPRC
YICPRSADKKTGTRCYVCNQPSCTTHIKTVCINCINEEVMDSLEEENNEIMSDDASG
>PiggyBac-7_SM#DNA/PiggyBac 595-2340 [Schmidtea]
MTKQMKIEKLLEKIRNIPEGFSDIEEDKLYDSDGDLIESNNGPYGSDDYMFDSGDNDSDHEESSASDSEYENILNIPKRK
RNQQLSTSSEEEVEEDEIELSADGTVWRKLNEGSSGGRLPLHNIFKDTPGPTGYAKRNIMKGSASSAFSLIIDRNIMEYI
IKCTEAEAFRVFGKKWTLTEEKLKAFMAIVCARGAYEAKNLKLSYLWNKKWGPKFFADTMSRNDFTEILRFIRFDNKNSR
SQRLQTDKFALISKVWNKFIENSQNCYKPGQNITVDEQLFATKARCRFTQYMPNKPNKFGIKFWLAADVQSKYIINGFPY
LGKDETRSSSTSLSEFVALKLMEPYTMKGRTVITDNFFTSVSLASKLLAKRTTLVGTIRSNKRELPKFVKIKKDNMQCYS
TLLYKANDFILTIYKSKPQKKVLVLSSKHKSVQINKNKKLLPETITFYNKNKCGVDSSDQMARKYSTKSGSRRWPLQVFF
NILDLAIINAWILYKKTTAINIARKDFMFQLADELAADFVKSRSQIERHNQQPLDESTNTRKQCQTGFCNKNKTTLMCDK
CKRYVCGKCISVKKIICKRCEE
>PiggyBac1_Api#DNA/PiggyBac 481-2263 via tfasty with PiggyBac-4_SM, 1 frameshift. Copy on NW_001931451.1. [Acyrthosiphon pisum]
MITNRTRYTMFIYAVICLFIYKVGFDESDEEEIASKQDIGTAQGDVHKYTVFHQNDVEYKTISDNEQTDTEEETEVSIPP
LQPKVIVSQKNNKGLFTPNFKWKSGTPFQPKVHQFCPSKSGIQKEFELNSNSTILDFFEALVTPFLLGKVAYETNEYYRQ
NTESHIMSCRNASWYDTTSEELYLFISVQMLMARNKKLDISEYWSTDPLLYSPIFGKIMSRNRFQLLLRYIHFCNNNNQV
TNDRLFKIDMVLQDIKNNFRSAMVPFQNLVIDESLVLWKGRLSFKQFIRTKRHRFGIKFFILCDVETDYILDFIIYTGKT
TRLVLCNPNLGQSGAVVKTLMKKYLNKGHTLYTDNWYTSPILSMYLHKKKTNTCGTVRCNRRGMPPFKKIKFQPGQTESK
HTGKMLTIKWMDRREVHMLTTIHGDEQLPIQKHGKITMKPKCVKEYNENMGSVDKTDMLLSSVECVRKTIKWYKKIFFHL
IDLSLLNAYSLYKTVTGNHIPIAQFQMELIRQIIEKYQTDRLPKSRPPTKDQPSKLINRHFPSEVPATQSGRLAKRRCQL
CKKNNKRTDTRIMCTECDVGLCAAPCFNIYHTKK
>Sola3-1_CB#DNA/Sola 1831-5181 via genewise with Sola3-3_BF, 6 introns (2430:2475, 2599:2639, 2943:2987, 3684:3729, 3824:3871, 4313:4447?) [Caenorhabditis brenneri]
FIPEYVSLSVYSLSLPDFFSAVCRIHENYLNDLLKTSSEQNTGRRKSVVNYEEEVIEEAESCSQDDPEYFCEESLNQSPA
MSSLQKFAEAAGIDLSCYSRKPYSELQERSRQKKAVRVRKLVDVMIEVIAPNDKEEFSTRVFKKQLAGIASNDNENLNKI
LKQMSDHYLAAFDRRSKLTILSLVADVLPYSSVVQYIPNLRxASFLYQNNCSLFFxSIHVRRSKEICSSQYRFxRAGENI
RKIQSGCSxEFHxVHYKVKKPESMNYLFLFSPTIMIGLPYGLRKVKMSDGSKVEIPNSIRQQSSTEIIQHVSQYAGGLKS
FSFYFLNFLLKETGQMELMLSKSTIFRILKVCEATERSATTCVDYFIANGMEVNFANNxTKIHFLLKAFDELHSIVDNWI
EQDAIDLDILKELKIELHETAQYLRADYRLHVKKASRVADHCATFALSDPNDAKMSLSCSSGEHAHKHDLKCPRCESGDA
TLTRIKNYAEDLLTETKNLPTNADSEAQRKVDELVAKYEEQVQLISKYIDQVFEMKKHLLRAAVTNQEREDIINDLEDNH
ALITIDFAQKYLPRWHREKQSDYFGKKGLSWHVSHVAARIGDNYTQHSFIHIYDSEVQQNSELVILTLSHIATELKKVGI
TTISIRSDNAGAYHCVSTIASLHWLMNEFGITVKSYSFSEAQNGKSSSDRDAARVKQKASRYVSMGNDITTSADFFKAIK
SGKQLNGVSIYHGSVAKDLDGKAKWDGISDLNYFTVEDNGIRARKYSGIGEGKFVPTDELVSMNGTYSFEEAGFVASDET
VDTSSDEKKLFLCSHPGCSASFLTVSYLEKHLLRGVHKITPEKLTMNDYSLKMYSRGLEEVNRKRKHSGPIDVIAEAIDD
FKEETETVRLSTGWALAKKATRKAFVADVKKFLVDCFEEGLNKKRLNPSTIAKRMAAATNADGTKRFTVEQRLDVKQIAG
FLSRESRKRRATSLRLRRDENNVVHVVTEENVEDLEERHWDADWIDYIEDEMTWTEWDEFLAAIAESAEPLFDYNNVDAN
PI
>Mariner-5_AF_tp#DNA/TcMar-Fot1 160-1783 via tfasty with Mariner3_AO_tp, 1 frameshift. [Aspergillus fumigatus]
MPNDYYEIEDQIERALRVLRRQEKPNISKTAREFKVPMQRLRRRFLGTPSRCDRAPTNTKLSTEQEAALIKYINILIKLD
IPPRPKAISNAANSILFRGHTDPKPPPPSIGVHWTKRFLERYPEYRVRRQRAIELERKRAHDPMVIEMWFHNLKVLMEQN
YIHLRDLYNFDETGFQIGIGKDQWIVTREFKKPSFSPSNTNQEYTTVVEAISADGHFIPPFIIFPGKCILAGWFDVCDEP
DYIIGLSDSGYINDILAFQWIQHFEHHTRRRMLGVKRLLLCDGYGSYMTYEFIDFCEKNNILLYFLPPHTSHILQPLDVG
VFHAYKHWHSEAIEDATQTGCGKFTKVEFLSALFEIRRRTFKQRTLKHAFRLTGLNPWNLSVALERLQDSKLFTDESSSN
SSFLITNTPQTARQIDRFNRHLLDLSPTEEDSFHTTLSKLVKAAKTQAILVEHLTERVRESDAAKLARQRCVQASRAHLQ
IGGIMRKEEVTCMKRIRQDYDELVEKNRLRPQWRKVMAELQEYCLAKGIIIRKRRKVRKVV
>Flipper_tp#DNA/TcMar-Fot1 149-1747 [Botryotinia fuckeliana]
MTKPYTEDDIAAALFAIAGGMSMRKACSEYGIPRTTLHNRINGHLSHKKGAQNLQKIAPVQERALANWILVQEALGTSPT
HRQIRELGESILNLEGGDLSLGKRWIHSFLERNPEIKTKRQYKIDNARINGATTEIISKFFEKLDLPAIKYIKPENRWNM
DEAGIMEGQGFNGMVLGSSKRRFIQKKQPGSRTWTSFIECISATGRALLPLVIFKGKTLQQQWFPIKLDNYEGWEFTATD
NGWTTDSTGLEWLKEVFIPQSAPTRPKEARLLVLDGHGSHETTQFMLECFKNNIHLLFLPPHTSHVLQPLDLSIFSPLKK
EYRYHLNTLDSLTDSTPIGKRNFLACYQKARLKALTLRNITSGWKASGLWPQNRAKPLLSRLLLENSNQEVVYQNPVSDD
DPELQWNIHSSFIAWKTPQKGSDIRKYADIMEKVDETDIPTRRLLFRKIQKGFDAKDYELVQSKKRIKQLEQKLEEIIPK
KRRMVKTSPNSRFAGIEAIYQAQIEAGDREIEIKDSDSIYETDTTGDCIEVE
>Mariner-36_HM_tp#DNA/TcMar-Fot1 1004-2788   [Hydra magnipapillata]
MRNYKRKTSNGAFTSQQLSDAASSVLEGKKSVSAAAKEFDIKRMTLARYILKLNSGGYPSMGYSKPRLIFSQEQESALKN
YLLQMASIFYGYTPKDVRSLAYECALQYKIKIPDSWTVNKMAGKEWMTSFLKRNPQLSIRKPEATSLGRATSFNAANVKV
FFDKLGEVMDIYKFSASQIWNVDETSVSTVVKPSKIVAAKGKRNVGAMTSGERGTNVTMVTAVSASGNTVPPMFVFPRKN
YKDYFVNNGPPDCIGVGNGSGWVTDIEFKNFMQHLIRHVKPSNEYKILLILDNHSSHLHFETLNLAKENGIVMLSFPPHC
SHKLQPLDVSVFGPFKKYLSVAQDAWLRNNPGKAITIYDIPKIVSDSLPLAITCTNITKGFQKTGVYPYNANIFADDDFL
PSFVTDRIEPANLVSELSHVAHSEVCLTSSSGQSVKSSINKETMLLIPETPKAFSPETVRPYPKAAPRKIHLTRRRKRKA
AILTDTPERIILKQQQTKKPKKVEKQKKLSTCQFLSNINKECGNKETQLHSILKKVKKQTNKKTEKKEILKKPKKSSASQ
SFADHGNKETLLLSILKKVKKQSNKKTKMTKKLN
>Gizmo2_EI_tp#DNA/TcMar-Gizmo 799-1797 [Entamoeba invadens]
IEKGGINFPKNHYRRKSRVIPFQNLVQKILEKDSTESVSNIRRHIKYITAKSNDRNLEDVSLVTKQEFEAGYHRRFNEPL
TPESLNLADSLIPSVSSITNFMRGKTGNEMGRTFPILSFKKETTRGAVANTPDNKEKRVEAIEKLVGMMHQGYTWVCVDE
SSWRIVCTSSYGWSPIGEKMIVTKAKNGQRLSALTAIDHMGMSFSLIVAGESDAEIFNRYIQDVMKHYDDNNINAVFWCD
NCSIHNDLEQLVEHTHHTVIFNAAYSPELNPIENIFGIWKRKVENEIRVWSGLEDLLCKIKNGFVNIQPADVIASMEKCR
NEVWSLVYTRSDL
>OCCAN_MG_tp#DNA/TcMar-Fot1 185-2482 Includes one intron [Magnaporthe grisea]
MYAQYVETHRSRADTAREGRSKPESLRSFCKRNGYPYSSTQRHARNLLINGIPKISIERSGRPSLLTDAEDQALVAYIMQ
LDKLGAYPDSQHVISAANLMRQSRIPPCGPVQMNWYGRWRKKHPELRLTKQQPVEITRLSWEQQIDLVEAWYRRTAAHAV
ELGITASAAWNADECGTRIGVRDGRIPVLVVTKKRHEKPRTADPANRESCTLIGGGNAVGQSLPPFCIFTKWPTSDWLDL
DLPEGIVFTRSETGFSNGDIQLTWIQHFNRYSWPEVAAVQSIGSPTLKEWFGHDFDVRFDFVNRTAAKIDPNSQRAKTRI
WRWLFLDGFTGHFGMEILDYCLKFDLEIVILPPHSTHYMQPMDVSVFTHLKNELQAVLHEHINTGIPVFTRSNFVAAIRA
SRFRSTGLFPVDGTKVLAKLRGHATAANTPRYPDSLPTAERFSRAKYAASRMAAKAHHFSSDTVDAISDLQAVANEAIIL
QQRVAQEQTNKQKRLQRASRYKVKMTLKSKDKQFQTANTLEDMRVAHEAKQALIEETALYQQEKFVKDAWYRDKNQAIQR
WRETEGMPNGIKIQQKRYLEDLSFTPENVPAVRERPGKRKKTDSQPSQSWFVDKGPISAGNTSTQINITVDTDSACSISI
CVSRSSQSASPPAPNRPSKPFPRYIPLATPSPRQLQDTRPLXDRSSPPIPGGRKDELEVPGSPCNRLSDRKRAIEPKLQK
>ISC1048_SS_tp#DNA/TcMar gi|15898087|ref|NP_342692.1| Transposase in transposon ISC1048 [Sulfolobus solfataricus P2]
MQDLVQAYKEEKNARIKERILAVKLHVVDGKSEKEVSKMLNKGYSTIKLWIGKYKKEGLDGLKDKPRSGRPRKVEEEKIK
QILEDKPQKYGIQQEYWTMKTLKIALQEQGIEYKKSRLYELVHELGYNLVKPRPTNIQAEKDKWEDFKKIKKLERKALFF
LDECRTVISTSIKKVLAKVGSKPVMRVNIGFSSIYVILAINAWTGEVVVSLAKRPNSESVKYFLRYFKRRVGSGRVYMVM
DNYSPHKTKGTLEVCRRKGIHPVFTPPYSPELNMAEAVFKSLKNYMSNKIFYTIEDVKNCIKQFFEENKYRFNLNAITYL
GLDKIEV
>Sola3-2_ADi#DNA/Sola 1547-4812 via genewise  with Sola3-3_BF, 1 intron (1699:1861), 1 frameshift. [Acropora digitifera]
MRSRRCFTIYTAICTSCRKKHAERLAALGMQISDKDTREQTAAAAGKEFQRSAKANAKTAISAHAVQMQTTPFRQLLAPE
SSPISSPCWTPGVAPTGTSLRSESTESLSAYNKAMDEIASKVAVERKPLTSQLDSWERSTAEKRRYYIQKATEDCMVVCD
GIAPNDGKQLFEAMRSTDLEKPDPIADDLVRTLMNAYKKATNRSTKTQILSPYAYKYSISTLKKLHLPYGKLSTRQIHRA
RCHARSLGPGSVPEQKIHHRVRIDMSKVDHFIEFINRPYFYQDVSFGTKLLKLDSGETIEMPNVVRTVTRSTMISQYIQF
CQEEKCEPLSRSSLFKILEVREASQRKSLQGLDNTAADGSAAFQTVERIVDDLEKGGLARQWCTEGKERLKDAKRYLKTG
YRVHCKPETATCPDHCRNFALSDEQDTDFQESCTHQHSETCDDCWNLRNVLDEVKNQISGSSWNPYSNEQRDDLMYDFMQ
ARTDILQWKAHILRSVNQEAAKQDQLGMITNNATYALIVMDWAMKFLQLKYREKQSDWYGKKGLSWHISTVISSDPDKAG
SLELQSFAHLFDTCRQDWFAVSSMIENTLEMIKTQKPHITHVYLRSDEAGCYHNNSLIAAAKDIGQRVGITVCRYDFSEP
QYGKDVCDRILCPMKTCIRRYCNEGHDILTAADMRRALSERPVKGTSASVCVVDETKKTLEVNKIEGFSKLHNIQFEEKG
IRVWRSYGVGRGKEIPFEELVLLSQENTGLVVSEECFDCRETRVYKCKDTTTESSVSSDSEIDMFECSEPGCMKSFRTFS
ELESHLDIGDHCVKEERQSETLYDKLRRDWVDMFTTSVNITKDGTCTPGSQQNVSSSPPSDQAVRMGWALPKPRAGSSRF
TEKVKNYLTARFDLGEQTGRKADPQQVSSDMRKTTDEQNNRLFDRKEWPSSSRRRQQDPTEVDLNSRDLLREEEEADRQY
LIEEVTQELRPQHPLSYDAFNLCECARENXLIQFNIPMLKQILRHFEIPFKSRDKKRDLIEQLMSFLQECDCQS
>Sola3-1_NV#DNA/Sola 2625-4154 Fragment (C terminus). [Nematostella vectensis]
MPNFVRTVTRSTMISQLPVAKSCILDWKVNILRAVNQEKAKQDLLKSMEVDKEALIVMDWAMKFNPKKFREKQSEWFGKR
GISWHISSGIIKTTQEINVTTYAHLFDSCTQDWFPVLSIVENIKERVKESNTSLRTVYLRSYEAGCYHNNNLVAALSDLE
KRTGVCVRRLDHSEPQHGKYICDRILCPMKASLKTYCNEGHDVAHANDMHTALSERPVKGTTAAVCQMDESRKSIDVKKI
TGFSKYHNFAYEEEELRMWRCYGIGPGKLLAYKRLLKKGQENTELHCLKPFFDIKELRGLKPSRAASRKEQPLFACPEPG
CRETFVMFADLELHLDVGNHTAETTSTTYDVIRKTWANRCLTVYQEAMVSTFTGAGTAAQPFTGTTGEPEGWALHKGRGG
SALFPPIVKEFLIRKFELGEKTGRKSNPEQVAIEMRCLKSTNGTRQFTREQWLAKQQIQGFFSRLAYTKRKGNNEQIEED
EVAKESEKRERQRESDELFLLIGLDRNTK
>Sola3-2_CB#DNA/Sola 2429-5703 Via genewise with Sola3-1_CB, 6 dinky introns (3597:3641, 3968:4011, 4106:4147, 4291:4336, 4646:4805, 5049:5081) [Caenorhabditis brenneri]
ILEFRSFQYISFKQFSDLQPDTKRKKSLILRHLLKVMTHIMAPDSPEELRSMAIGEDAKSIWGVNSDQELSRVLEYSSKL
YYQTESRTERLHLLSYFSPLLSLSHIQQYIPGLSKSMYYHSKKLTQKEIVKVSGRRERYDPIKVQLFVEFITRFVIFLKY
VNRRLFFSNVVTSSHTFGVKKGTLSDGSIIELPNTIRKQGATEIIRMYKMHLIVSFNSMSLQTSLXQEQNMEDKKMSDST
YFRILSACPATKQSGAVCVDYFMADMLEVRFNKNNTXFNVXFQAQEKINEILNNWYQNGKIPSAYRDQLIRGIEESVNYF
RTDFRIHLSQESTTADHCMQHALSDPVKPDFQVQCDHDHSIKCDRCEMVKNIEGELLDYSDSLVKNAENNDQSAVGTYQE
QYGTIKNCLKKMFEFKRHVLRSKYTDQHRAHILSNLGEDEAMITLDFAQKLLPMKFYETQLDYFGKRGMSYHIAHVMANV
SETLVSHSFVHILKDGAQDNQIVTAILTHILSELGSLGIKAVYLRSDNAGCYHSARTLFSLSTISEKTGVEVSRYSFSEP
QNGKSSCDRVASQIKRQVREYVDLKNDVTTPEEFFQAVTARPLRGVSYYLADLNDRDSSKRKPATITGMSGLYDFEIDRY
YLTARRYFGIGDGIKVKVDSKQANEATLAIIDQGGNTARKNVALQDVHQEELHDHVLRIFRCPVAGCSARFLYFGSLEHH
LDRGKHNSASERRTLRDEALHNFRLXYDQCSFFRKKKHFFXIAAVTNALQKLRLHKNDQLLNLPIGWAIRTRAKQGRFSE
TVHTWLKDIYDSGRKGRKKTGKEVELMMKTAVNEDGNVLFSVEERLNWRQIQSVFSQLTRKDDDKEANRAKRNAEKVETE
TEETSNEYSFQFEESYQDEAGPNLPDILWMKIKTDRSIFLGDDEEDEEDEEDESDVVIIPEADSSRRRSHSPEKSRKFKR
IRDELFL
>46134321_AV#DNA/TcMar gi|46134321|ref|ZP_00203267.1| COG3335: Transposase and inactivated derivatives [Anabaena variabilis ATCC 29413]
MVRPRIKLTEHLSTEEIEQSYRRCEDAQEKTRWLVIKLLNQQPQLSAQKVAEIVGFSGDWVRKIVRRYNKLGANGIINQQ
KLKPGGKKLALTNEQQQWLRQRLASPPEDGGLWSAPKVGELIRVQFGITLHVTTAWDYLKRLGFSLQQPRPLHTEAATFV
QRQMFKTELTEFVRLLRFLHPHKSVEVWAEDEARLGLKPIVRRVWTPVGHRPNAVHRTRYQWLYTYGFVHPATGESFFLI
LPRVNIAVMQMALDAFAAEVNPHHHKIIVLLVDQAGWHTSKQLMLPAGIILFPLPAYTPQLQPTECVWSLLREAVANQMF
STLDELETVLISRCQWLMSHPQIVHGKVGFDWICQI
>Sola3-3_BF#DNA/Sola 1517-5050 [Branchiostoma floridae]
MRFYVLAANMSCSFGSPDSECGLSRYYPEDISVIPLSACNKDVTNYLATLGLSGRGHGQTDLSEQDLILNRSGRFGLSEE
EKNNLTVCPKHRYDLTTRWTGGRRNTCAHPEHVGRKTALKEPRRVPMFLSTQMYRTYNTVVPVGSAMCNPCRKRAVKDAE
RDVERPTGSQDLSSDQPGPSSYPQSTMGPPSQPVGTAASTSTALKATSQVSSSESSSVISETPIVETTFESQSSSTGEGE
ANISTWVDEQHQQEQNREALNKAVDQITEGRISPLRSSLNTPWEEVTERQRNYYLKKTREVMSATMSVIAPGQESDLWRS
LVQAPPLYEEPPAKKKMWDQQMVQTLVKAYQEADTWQTRQQILSLFADDYTKDELQELIPGLSKWRIDQARAHASESGPG
KPVQQQPIYRTRLNPVKTDHFLAFLTQPHLLQDVAYGTKTMKLDSGEVITIPAAIRTIIPSRIIQQYSQYCTSANFQPLP
DRTLFKIIEVCAARQQKSLQGLDYISTEGAEAFDAMCSVVDSLVQNGASADWAKTVTHKLKEGKRYFKTDYKTHVKLEDR
CGDHCIAFALSEKGKETLSVRCNHSHEIACERCSEIDSSVLEVQKMIEEEGLLTEEHKSRLCFTFEQSSSAIYSWKSHLL
RAVNQDLAKQSALQQLDTKSALIVMDWAMKFLPLKYREQMTDFFGKRGRSWHVSAVITKGDEGKYDVECFVHIFNNCRQD
WSAVCAILQSVLQTIKSENPSLTNVFLRSDNAGCYHCAPLILSLPAIGKKTGISVLRFDFSDPQAGKDICDRKIASMKTH
IRRYVNEKHDVLTAEHMKEALESHGGVKGCRIAVAQTDEANKEQARQKWEGVKSWNNFMFETDEDIRVWKAFGVGVGEVV
TFATVPQTHDLPTLTITAPFGPPQSHTSHITTSAGGTKSALFCCPEPGCVAAFSSANKLEDHMDVGEHCKELERESTYDK
IRKQWAQAVTGIAHGPGLASQSLGEGSGVGVGGSARVVNEGWAIRTVKGGQRMSDKMKTYLTDIFNQGAKSGQKADAVQV
AHEMQHVRGADGKLLFQPSEWRTAKQITSYFARLSAAQRQKESTESENTDMEAIDEESEWQELRKTVYTSIDYSHPVMFE
DINLCELAKTKGLKSLKLKQLKCISDHFHLPITGSMARKVSFIQALENILSTCTCAS
>HARB-1_TA_tp#DNA/PIF-Harbinger  470-1765 [Triticum aestivum]
MDSDDEEALAALLEEEADADVQXEEHLMVLAALAGLLASNEKPRRGGSAPGRLKAKNRHRLEGYCMLYSDYFADAPLHGD
KIFRRRYRMSRKLFLRIVNSIREFDSYFKCKKDCTGTLGFTSIQKCTTAMRMLAYGAPGDSLDDYGRMAESTTIECFYKF
CRAVVAVFGPQYLRSPNAEDTARILAQNAARGFPGMLGSIDCMHWKWKNCPFAWQGMYKGAKGGCSVVLEAVATQDLWIW
HSFFGMPGTHNDINVLQCSPVFAKLVEGHSPPVNFEVNGRHYNKGYYLADGIYPRWSTFVKTISNPVPGGKNSHFAKVQE
ACRKDVERAFGVLQSRFAVVRYPAQTWSKDQMWEIMTCCVILHNMIIESEQEEPVFDTEPYYRQGPLAQVDHQLPATWTA
YLNMRQEIRDPQVHQQLQQDLVEHLWRLKGNA
>HARB-1_STu_tp#DNA/PIF-Harbinger 692-1402 (C-terminal fragment) [Solanum tuberosum]
LGSLDCMHWKWKNCPTAWAGQYAGRSGSPTIILEAVADYDLWIWHAYFGLPGTNNDINVLESSHLFSNLASGIAPPAHYV
IQGKEYDMGYYLADGIYPKWSTIVQTIRDPHSQKKKYFAMKQESCRKDVERAFGVLQSRFAIIAGPSRFWRKEVLHDIMT
TCIILHNMIIEDERDLNAPIQDAVEAPTPTIEMVVDENLRFEQFLARHKKIKDKNAHFELRNALIEHLWEQRNNFEN
>HARB-3_STu_tp#DNA/PIF-Harbinger 2519-3694 via genewise with Harbinger_tp, 2 introns (2828:2905, 3145:3224) [Solanum tuberosum]
MFGVDGDAYVRLCQYFRHNEWLIDSKYVSVEEKIAIFLCIIGHNERFVVIKRRFQHSSQTIHKYFHEVLEAMMKFVKEMI
SSTSSNSNSTISSAQQRLRRIFKGALGALDGTLVHAVVPANQQIMYRGRGKGKYYQNILGICDFNMIFTYVYARWEGVPH
DARVLTEIVSXQIYNGFSFPPPNKYYLCDATYPNTRGFLAPYRNVRYWLGDYHLRRAINKEEKFNHGHAQLRNVIERAYG
VLKARFPILDKMPPYSIDVQRDVVVACFAVHNFIRKERINDDLFNQYESTQLIFDEEEGEHEEVLDETNGHGWTTADSQI
MSNMREKLALQLMQRRGNT
>Harbinger4_TP_tp#DNA/PIF-Harbinger 193-1573 Via genewise with Harbinger2_TP_tp, 1 intron (414:507) [Thalassiosira]
MDQRHHIESLIVVAAVAYAAKYFSGKYSKGSRHGKQTKQRERRTVEQMYQCLGDIYFRRAYRMSWLSFWKLHDKSNYLNP
TPPPPPNGMISTSVRLACALRYYAGRSVYDIMSSYGISHTELFESVWYVVDAINKTTSFDIKYPQNHEEQKKIAADFKAV
SEVDFDVCAGAIDGILIWTLKPTLEDAKAVGVDQMKFMCGRKHKYGLNCQAVCDVRGRFLHMSITCGGASSDLVAFEGSA
LKKQLDDGLLAPNLCLFGDNAYINSQYMVTPYPNTSGGAKDNYNYFHSQLRIRIECAFGMFVQRWGMLRMVIPRNISVPK
TISLVLALAKLHNYCIDEVDAEPSTILAQDEQNITENENGSVLLIHDNQIAEVINVNTTTPQDLIGGGDHFDDVPRYFRR
GLQNDDSRTRLCNHVESTFKTRPRRRQS
>HARB-N1_OS_tp#DNA/PIF-Harbinger  982-2235 [Oryza sativa]
WDQEELSDDDDYYIAAALLTDIEHKRTKRKRRGSVPGREIIYRDRFAGNLRIVADYFADPPVYSAKLFRRRFRMSRELFL
RIVASVEAHDDYFRQRPNAVGLLGATALQKVYGAIRMLAYDIPADSLDEVVRISESTMIEAFKHFVKAVVDVFADQYLRA
PTAEDTARLMAINTPRGFPGMLGCIDCMHWRWKNCPTGWKGQYSGHVDGPTMILEAVASKDLWIWHSFFGLPGSLNDINV
LQRSPLFQRLTSGTAPELEFMVNGKKYTMGYYLADGIYPSWATFVKTISNPQGNKRIHYAKVQEGVRKDVERAFGVLQAR
FAMVRGPARFWDTETLWYIMTACVIMHNMIIDNERDEDVDFDYDQEDSEVLRKEEYQRRNKPVLEKFLKIHKEIEDRRVH
EQLRDDLVEHLWALHGAR
>ATIS112A_tp#DNA/PIF-Harbinger 3583-5037  [Arabidopsis]
MNVHRIKRIRTLLLYCSIYNPNTTSIFLSTLFITIINTLFYQIIFISSLSFYNFAKMAGSSSNYNLDDMFDDKFDQCFDQ
ALESYGNRQRVKPRKKKAYIERNREEGHIQLVNDYFTENPTYPPHIFRRRFRMNKPLFMRIVERFSNEVPYFKQRRDATG
RLGFSALQKSTAAIRMLAYGIAADAVDEYLRIGESTSLLCLEHFAEGIINLFGDEYLRRPTRDDLIRLLHIGEQRGFPGM
IGSIDCMHWEWKNCPTAWKGQYTRGSGKPTIVLEAVASQDLWIWHAFFGPPGTLNDINVLDRSPVFDDILQGRAPKVKYV
VNGKDYNLAYYLTDGIYPKWATFIQSISIPQGDKASLFATTQEACRKDVERAFGVLQARFAIVKHPALFHDKVKIGNIMR
ACIILHNMIVEDERDGYTQFDVSEFVHPESASSSQVDFTYATDMPSNLGNMMATRARVRDRIKHEELKADLVEHVWQHYY
QNQS
>P-2_HM#DNA/P 696-2993 via tfasty with Galileo_DW, 1 stopcodon  [Hydra magnipapillata]
HYFYKSFxEFVDRVSILKLESWELVISKDLVKVFKVDNIHLQPQYEVYVQPSLIFTIRSFAWNLPDTHDIYLNYKQSVKN
ITLSSIIALLSTYSLCQGVASGSNCFKKHILTKLYNPSVKSITTFESEFNRSTLCFLLINSGNICNECKTLELSQNAKLQ
KAVKRKAETLTKPAHINAPISLTSPDRIKLTLQNYRSENAFLKQEIKSMQEEIQKNSLQVTSDLDDDMKNLMSNAFDLHS
VSPFMKFFWNEQQKYFLSNPTSVRYHPMIIRYCLSLCAKSPSAYEDIRFDKKSGTGFLVLPSRRRLRDYKNCIHPQRGFN
PDIVKELKSKVKDFSEIEKYIVLLFDEIKIQENLVWDKHTGEIIGFVDLGDIDLNYATLQKIDAVATHVLVFMIRSIVNP
FKFTLANFATLGISSAQIFPLFWKAVAICELECKLKVIATTCDGAASNRKFFKMHSRLSNSNVKKDVVVTYKTINLYCPE
RYIYFIADPPHLLKTTRNCIYSSGSGKCTRYMWNDGLYILWSHIADIFKEDQICGLHLLPKLSYDHIKLSSYSVMNVKLA
AQVLSTTVSKVLLNYGSPDTFATANFCSMIDSFFDIMNISNPYESIQKSKPFLVPFSSLDDNRLNWLKAEFLPYFEKWLS
SINTRQGKFTLNDKGKMFISWQTYEGIKITVNSAVELITFLLSNGVSYVLTERFCQDPLENYFGHQRQIGSRKDNPSVRD
FGYNDNTIRNQKVFRPIKDGNSHEDIHFEINEEPVPCRKRVKTSLQ
>P-2_AP_tp#DNA/P 274-3163 via genewise with P-13_HM, 2 introns (345:415, 1141:1224) [Acyrthosiphon pisum]
MVASCSAHGCVNRQIKGIKNHFFTFPLRNPERNAKWIKAVGRKGFIPTKNARFCSNHFLKSDFKTPVGGTYKLLLCDDAV
PSIFNMTVIQTPTTIYITQKFVNQLQVNXTTTELSTSVQHEPLCLTPKRHLCFKSAEEEFSLISTPSKCKITVSPYRKTT
PSKLVHKNKIIKQANTIKLXKQQIRRKDIKINTLAGLLKLLKDKKVLNMESEELMLDKFDGLSQELFSNIHKNQNIDPNG
RRYSKTIKEFLLTLNYYSPKAYEFSXSILILPHAKSIRNWTSTLNGEPGFLQEVLDSLQTLNENDKHCTIAFDTMSIRKH
IIWNDKNNKFLGYCDFGNNLDIQSNETSATEVLVFIAISINGKXKLPIGHFFQNKISAISQTELVKTALTLTHIAGLKVW
GVVCDGAYTNVSTMKHLGCVVDGGYEELRCWFSHPVNNQKVYYIPDACHNLKLARNILGNCKFIKSNKGNVKXAHILYLH
SVQNDITFKFSNKISAAHIHYYNNKMKVKYAAQTLSPSTADALEYLNKMNVTGFADVEATFEYCRVIDRVFDFLNSKSSF
SKGLKFPIFRNNISFLKTIIIPLIKYIYSLKFNNTPLHKSKKKKTFIIGFAIAVISVFSIAETIFLEHYSSLNMNYILTY
KFSQDHIEIFFAQIRQRYRSNNNPNVVQFKTALKQILFKNYIKCKSNGNCNISDDDISGGIFEFKWYRRQKNIDEITCSE
ELDEDICNRLVLLNTINTSLAEAKNNIFYYILGYIIRGIVNNLSCNSCITCLFQKISDHNYSHSSVSQFLNLKNKGGLIS
ASEDAFKIIVETEKLFLYYTHNLKRLHFPNLNIIILRQIINKFSXDCNIFQDINCENISILDRPHKIVLITLITNKFLSI
RLKSYGKMFSSNILNPHRKRHTLTKQMLFSHQ
>P-3_AP_tp#DNA/P 2265-4502 via tfasty with Galileo_DM, 4 frameshifts and 5 stopcodons. [Acyrthosiphon pisum]
LQKPDNLLKNLTNQLAxNLKYYSATTMIVKYQNxSLLFNLKKTNPxQKCLFIKVKKNLKILRESKKNKSTLLDSLYYPSS
DSKTLVKMQVLRPKFSRKRFTKNEKNFALGLFYKSPSAYKFLKNNKQLTLTGLSTILRWIGSSKFKPGFNAEYLNSxKKS
ESMSQDELYCTLIFDEMKIKNYLESSKFLDVVEGFEDLGPKGRSNKLAGQAMVFMIRGLYSSWKMPICYFLPATAMKNNI
LSDLIVEIVHRLLNCGFFIKAVICDQGANNVSALKLLKVTKDKPFFEVDGRKMYSILDTPHLFKNFRNHFIKNNFKFQNE
EVSFQDVRNVYNIDKNSTTSRSLLKITENHINPGPFQMMSCKLAMQLFSNTMAATIKTVTFVYTGELKSKTALHKANMIK
FLNDLLDVLNSKSLYNSNRFKCAISDTRPQQLQFLEKARSTFETLEKMDVKNKKSKTTRPLCFDGMCWTINAIIMLYNEQ
KEIGFNFILTGRLNSDVIENTFSIFRQRGGYNRNPTTRIFRTRFRRNAKMSLMKPSSSSSNCEPDDDTHLMTNKDNETRL
LDMDSSFSSLSSVSMLGINNSLEEQEGLVNLENCSNTYFAGYLAMKCLLKFSCSNCEKIMIKSGTILNQLEYLIFCRNYD
SKTSKLHLKVPTTTITEFVISSQKILPKILEKKPHKIKIAQSVGEQIKTNLMHSLSIEEDCIPHLEFLINHLIICKLFRN
FSWCSKNLKHVRSKKSKKKNxKLKII
>P-31_HM#DNA/P 210-2978 via tfasty with P-13_HM, 2 frameshifts. [Hydra magnipapillata]
MVNSCAAYGCSNRYIKGGKKSFHKFPFQNSELCKKWIIALKRENFLPSKHTCICSDHFLESDYNYCIPDKKNLILDHYHK
PILKCNAVPSVFVFSTNIQKTKRKLPSIRTSVNSLSKFDSFSKKTKFDVCPAIDKPSKEINSTHNDQPESTIDQNDHTSQ
SPTQSIKSLSPAKEKLKKKIKVLQQKLRRKEKKICSLQDMVSLLKSKNYLTTDAGTVLSENFSGLSYEIIKNQFSNQNIK
PKGHRYNDEVKKFALTLHFYSPRAYNFLRPMLCLPAASSISHWTSSVNCDPGLFLDVFSYLGDKQKTDINFKHCALIIDA
MAIKNSIIYDKSSGHYIGFCDFGKDISVCEPDTPATEALIFMLVGLRGHWKTPIGYVLSNKVKASDLTCFIKNILDVALT
YELCIKSITFDGTSTNLNSVVPFGCKFGNVIDNIVSTFLYNNQLLHVFLDPCHMLKLARNSLNDLGVFIDDEGCYIKWSY
IKALFELQELEGLKFANKLSRKHIEFHRHKMNVKIAGQTLSSSVADAIGILIEFLMVSQHPSFLGASSTIRFIRVIDKLF
DMLNSRNPNGKHFKKPLYLNNQLYWKDFLNTTITYLSKLTDINGIPLLLHRRKTFVLGLIVDAKSTLKLSFDLLTLHEKP
FKYVLTYKYSQDHLELLFACIRGKNGYNNNPDVVQLKSSLKRILLRNSIVGSSHANCLMFEPYSNGSIFSLSWKKRLCSV
DNFDQEDIDFEEVFLYCDELQMSSYKEAILGYISGFIVRNLINTISCNVCAQSLTDILSYEHSYAKSHSSLNNVKNRGGL
FLPSRDVVFVVEMCEKVFNFFISGKDFKNPKITSDKNIKHKMIHCVNKLIIKKKVFKGLDSHDIELWTENEDLHSSQLVR
KICEYYFRIRMFRYAQDYTTKVLRKSSIGLRQQTNKLILFKGL
>P-30_HM#DNA/P 171-2900  [Hydra magnipapillata]
MPGANCSIYGCSTSRRHKGVSIFKIPASSDSFNTSWRKNLIAIILKDRIEDCNLKAQIESKSLFICEKHYLPEMILHNNN
RKSLKPGSLPTMCLPKKGFMSSIPVQRESASSIIAKRDASMNSNNIITFKPIYKSYEEFTNRISKLKICEWTVSVSLVVA
EFKLYDTIHLCPRYEIYVDDSLAFTIRVYSWLIPDDHSIYTKYRRSMRNISASNLISVVTSFSLCSGITNIFSLKSNLYI
KHCISKKFDLFSSRTEFPLNQTEYFRSQSCIMLIDLMLSCSQCKSIEKSEIISLKKNITNACIPAKLNAPIKFTSPDRLK
LTLQSVRLENKELKMELALMKQEIENSSLTISKDTESDLVKIMSGADKSKISPFMNLFWEEQQKYLKSSKQGTRYHPAII
RYCLGLAAKSPAAYEALRLNDKNNSGFLILPSRRRLRDYKNYVKPKLGFNKNIITELKDKIKDFSAQEKFIVLVLDEMKI
QENLVWDKHSGELIGYVDLGDPSVNFATLQQADKLASHVLVFLIRSVVNPFKYSFANFATINITSVQLFPLFWKAVGILE
ISVGLKVVAVTCDGASSNRKFFKMHFNLTEKEDRNGNVDVTYRTDNLFADDGDKRFIYFISDVPHLIKTARNSLSHSGAG
KSNRYMWNQGQHILWSHITDLFYEDLKCQLHACPKLTVEHIKITPFSAMNVRLAAQVLSNSCSTALEIYAPSDTSGTAQF
CKYFNDFFDCLNVRNKNDYILKRNSFLKPFSDTNDVRFTWLKENFLKYLSDWFLSIESRPGKFSKSDRSNMFITWQTHEG
LKITVNSIVELVSFLINSNVSYVLTERFCQDPLENYFGQQRSIGKRKDNPSLFDFGFNDNTIRNQHIFHPIAGNCLNINE
SNRTTIKESMSRIPRRKWTYSQNSIDKKS
>Harbinger-1_ADi_p2#DNA/PIF-Harbinger 1487-2176 R [Acropora digitifera]
MKWSGEHDVMLGREIMLFELWKYKAGSRERGQCLDRIAESLNHLERPSFSVSQKSVRDRLKILERDFKKKERSEKNASGI
SPERTEVDQIMEDYLEQKEDQERESEKASEESRDKMAKEKATAEDMRNKAMERLSETKKRAGSDLPKKKRKHNGNDTLEY
LKEASDRECELKKQELEFKMQQEKSAAAQQTLMLQQMKNQQEQFQTMLQMFMQQQQTQSQALLELLKKRN
>PIF_Harbinger-2_PleOst_p2#DNA/PIF-Harbinger 2235-2690_R [Pleurotus ostreatus]
MVRAKRQKTIHQDSSPLKIRIKLPIKPSDIPIDSSTSVADPVQHQPSPAWDCEQGSLPDDSSQTPEDTTSQRQSKNARSP
RWLPWQDRRLIKEVDNVRPFDEPNTKMVTKAWETLAETLRQHTALEGPQSVIDRTAYACRKRFEKLIQSHKV
>PIF_Harbinger-1_PI_p2#DNA/PIF-Harbinger 1985-2554_R [Phytophthora infestans]
MPPTRPVSGSAGIHDIVSYPAPEAAQINGLLVGSSDTLAASATLPPQADANLSGSLGGTAGSSPSAVDRGGPVPKRRKGN
KSKKLPASSGKKPSAILDWTESMVRDLMTLRFDTYADRFSSAKNNAALKVTWLLLATDMSERQKTPISTEQCKNKVSIYE
ANDALILTNKYVLSCCAAEMAEAQVGGVQG
>Turmoil2_p2#DNA/PIF-Harbinger 1355-1684 (Identical sequence in reverse at 5538-5248) [Caenorhabditis elegans]
CAFQLKNAEILLFLQEVEQYPCLYDLTDKHYKDREKHDFWIKIEKDLGFLAEDRGSNAIKIWNSLKSEYLRARKKKCPSG
SGLDDIENSFDFYQDMSFFEASLSKRFSTP
>ISL2EU-4_HM_ex#DNA/PIF-ISL2EU 6583-4671 #reverseORF Via genewise with IS4EU-1_NV_ex (1 intron)  [Hydra magnipapillata]
YSPEAMENYKSLEAWKFFQEGWVQTVVHMKISQDIMILKCDVRPSYRTTSPNHKPWIALGSLGNVVTAHCNCMAGLGETC
SHVAATLYKVEAAVRIGMTSSTPTDLPCQWNQTFVKNIVGSPVSQINLYSDAAKEKLTGKRTRKMPVSPTNIEKYQFLSE
LKSVQPKTAALSLFKDFDTEFIHLESTVVAKLPLSLRNFFNANYKSLDNEQLNSFFDEKIKDLKLNSDDIVYVEEATRNQ
SLCDSWYQVRVGRITGSTLYQVFHARVETPPKSLILNICSEKNITIKSPPIVWGRENEKNALTLYTQLYSDCNEAHNLLA
LSDIVIHQNLKVEKLGLCIDYEKPWYAASPDASVYCTCCGHGVLEIKCPFSLKDKSLKEEILKDVFYVGLNTDGKYFLQK
QHTYFFQVQLEMRVTGVSYCDFMVWTPSEFIVLRIEPDISFMESVFNKCDVFWNRFILRELVTREVESGMKLPSSTLTET
INNDDNVFCICKSKSSENDDTMVGCDSCDNWFHLKCISLKSVPRSSVWYCNSCKNKKKSAHKNVIIFYNFSSKKFFFNNT
FFYYYLLRNQYINGAVLMLFSLSFS
>IS4EU-2_DR_ex#DNA/PIF-ISL2EU 5276--2904  (3 introns) [Danio rerio]
MERFFTTSLSTLPQIKFEDINRIVAENSLTTGSRLKKGYKFFVEEFIHGYQVSNVVDSKVVVRARCYRSMRKNEEPHTLE
VICNLPMFLESHGEPSVTAYACSCAAGKGLCNHLTALLYQTAHYVQLHLKSVPPTVACTSEQQRWHRPRTQVSVMFPVFQ
HLQIFLVDTFFVYIKGVSPEAVSQLVVQKPCSLGKTGVKSTLYKAHTGPLPDPHILASGAKLNQIDPKPLLAHILGGMSE
MELVSSQFGPLPRGSPLSYHYPLTAADQPTVDFPNLPVCGSQFSTNLNFVPTHHQSFHLQSIQVSHILSGQIEHNTRLQS
NCAAWAHARQPRVTASRFREVCYVVGESASQSLAARILKGTKQTSAMKRGLELEPEILKQYSETKRVTVLPCGFVVHPDA
PHLGASPDGRVYDPSEIFPFGLVEVKATSAESIGQASFIKMQKGQAKLKETHKYYWQVQGQLAVTGLQWCDFVTDTQSDI
TIQRIWRDDVFITSMKEKLDMYYYYVYMDKYLSMV
>MtPH-A6-4-Ia_p2#DNA/PIF-Harbinger 2321-3334 via tfasty with MtPH-A6-1-Ia_p2, 4 stopcodons. [Medicago truncatula]
MSTSKRETWTTEMNNALIDAFVHQVSAGNKQGGTFTSIAYTNITKEMSEKFQRPFDKEKVKDRWKLVKRNFTKCHDIFNG
MSGFAWKSDTHMWDALPEVWKTLIEVHTYNLHxLSCWVCLLIYMAxTYVSMCTYLNFFxxAKPEAAQWMNKPFANYDKLV
IACGDERATGGKVMNDEDIRQNHPLNRESESIGTSDQVTLESLQEGGNEQDVTSPEVQIPPEPRAKRSRKSRDEDEVEGI
KAALLNVADAFRESTASHDKYFKDSIAAYEKANLKLPISEEEVFKLLEELQVDSHMIIRAYSYLLEFPEKVRALLGLPKH
LRKSFLLESMVGQGYSSR
>Harbinger-2_AMi_p2#DNA/PIF-Harbinger  3303-4243 R  tfasty with Harbinger-1_Crp_p2, 1 frameshift and 1 stopcodon.  [Crocodylidae]
SNWWDLGTGAWPGPHRGPTWRAEEVADLLAIWGQEDTLRQFRAGHHNEHIYRAIAAQMAEWGHRKTWQQCRTKAKALRRQ
FTAVRDANRRSGAGRTTMPHYEELARILGPTATEPPPLLLCHWAKGSKRSSHAGTQPESPEAGPSSRPAGLPSPSVRSNS
SEGQTLPGTASATTMPEGSPExDDPFLLLNSSSSGEGQPRVSPTSVESTPWRPCHHPSLPPEAGSSSATQPSHLSPRPGK
SYTCHGELGASPPARSSSRPACASCVSLPPPSLPSSSPDPPPPLISHAEAYFPAGPRQSPHLASTPCWMELALVMGQGGG
VGLTPQAHGAPAPQHWGHYLRTWPSWNADLPW
>Harbinger-1_DK_tp#DNA/PIF-Harbinger 396-1856 via genewise with Harbinger1_DR_tp, 2 introns (796:858, 966:1033) N-term truncated. [Drosophila kikkawai]
KRFGTFWEKDVPENNDEFFKESFRMEKRTFSFLVDRLEVLRKKDTNWRTAISLEKRIAIALYTLGSSSEYRSIGRLFGVA
QNTVCKILHEFCRAVIAEFAGEFMSPDYLTLEKVEECVRGFEQIGFPQCLGAIDGCHIEIKPSAADAVDHHNYKGWYSIV
LFALVDYRXKFTYVNIGSAGRCNDSTIFQKSSLARKLGSSTLIWEKSKEICGVQVPLLLIGDSAFRFSQTLMKPYPFSTT
ASIEERTFNYNLSKARRVVENAFGHLKARFRFVGKGLDSHYKNNNAIVLTCCILHNILNEHNSVINDNWQLAASDLREQP
NRTNMSADFSQPAEKVRAAIAQYCLNGXKFFIIFIFFFFQFWTPSEIGEVPTGTSPGCPPFFAEFPSALSAPPASLEQFR
PARFFGLLLLFWPEANCRNVDFRSDLIPPGPPELPLKNTPSYLQ
>Harbinger-2_BF_p2#DNA/PIF-Harbinger 5036-5401_R [Branchiostoma floridae]
MAGRKEGARRCIWSTPETRCLISIWGQAEIQKKLEGPRTKMVYAKIHQLMKNAGYEDRTAEQIKRKIADLKAAFNNAVKK
NKKSGEGRKLCHFYNELNVFLGGREALNPQSRLESIADPGKF
>MtPH-A6-4-Ia_p2#DNA/PIF-Harbinger 2321-2656 [Medicago truncatula]
MSTSKRETWTTEMNNALIDAFVHQVSAGNKQGGTFTSIAYTNITKEMSEKFQRPFDKEKVKDRWKLVKRNFTKCHDIFNG
MSGFAWKSDTHMWDALPEVWKTLIEVHTYNLH
>Harbinger-5_PGr_p2#DNA/PIF-Harbinger 2511-3278_R [Puccinia graminis f. sp. tritici crl 75-36-700-3]
MLSKLLMAPGVDPSCPRLLLLAALASHPPSCHSYLSVHPSSHFHFFMHFFISNTTYPTPNTMPPKRVVLDPLLMEMNQTT
PTATTRTMRTTHPDPHATPTGSVPATTLSMPSQLDPHTTPVPQPASSNEITDETDDAPKKKAPKWTIDEDKQLCAAWLNT
SRDSIVGTGQKAGTFWERVHQLYTDLVVDYNKENKRSKTIKPLPVRLVNAIECRWGHIMRVCNKFGGCYSQVERRMRSGM
SRDDIVSLHFYKLIFK
>Sagan-8_TMe#DNA/TcMar-Sagan 285-2484 via genscan, 2 introns (405:457, 1113:1180) [Tuber melanosporum]
MEPSGSNNTDGNTARKPVNRNTEKSRKWREKRKQKNVLEIDTELPEREVSANALRVRKWREREKERLVQLQQASVPERLT
PPIVEVTSPAGAETAITHRERLSEYYEKWPRRLGPQNQACERRLEVLEAAKKSMAKLITYRKSKHAHRPVGKNFTWHVQV
YQFLKLQVKNEREALKGEDLFTGETSILQKRKIMAQKVANGGGWGRKVMERIMRHEVLWVTKRRIPEPHSGTHRKILSLL
DDAETLLAVRQYIQMVGDKLTSHGLATAIAEHWKRTRSDSGISNRSTNNVTRQVEKTIASSTATRWLKKLGFKYKEYRKG
IYNDGHERPDVCKYRDEVFLPRMASYESQFMKWDADLDIIPNPAHESSEIQPLILVTQDECTFNSNDGRHYIWVHEEHKP
LRKKGRGQGLHVSDFLTPIGRLGDGDACVTMQCGGDTWWNGDRLLEQIVDKAIPAFEAQFPGCKALFAFDNARNHLKYAT
DALRVSEMNLEPGGKNVKVMHDTFVIDPNHPNGGFMQSMTFADGRPKGLKTVLTERGLWPQNGQRFLAQCSTRSTTGKSM
KPNPRCLAGGTCCAHALLAMQPDFQNQKSQIEEVILAAGHEVIFYPAFHCELNFIEYFWGAAKVYTRNNCGYDFESLKRL
VPTALAGVSNKLIWKYWARTERIMEAYHQKVVYGSPEYASIVNKRYKSHRRVSNM
>Sagan-6_TMe#DNA/TcMar-Sagan 68-2149 via genewise with Sagan-4_TMe, 1 intron (324:380) [Tuber melanosporum]
MDEGIGEDEGIRDGEVGGEEVEEREVENEEWMAEEALELGWQEEVEQEVQEEVNEERDDMAEAVRCWPVLSKYQSMRFKH
RILTNGIHDMRRLLNSKRRKPKGQDLARHLQVLEFLRFQRYGLQKTFWQRTRKDAASIVAATGGCGERVRNRIIQHEKSW
IKDRHIPLSYQGKSPILYRLIDDEGTKLALREYLGGAGERITGQSVAYAISSYWQTGILPFEEQPEMKTPPSRYIPEIEA
QLAQLADERQEVQKTLSSRTAVKWLQQMGYKLQDVKKGVYKDGHERGDVVEYRQEYFLPTLKGLEDRIVRWELISTNEGE
ELQIVFPQNLPAGVKPIVLVVHDETTFNANDGRSKIWIKDDHIPLKKKSRGKGIMVSDFLTPGGRLRVPEGEHLDSNPEY
GNQHEGPRRLDSHLATCSIEYGGDTWWDGDQLVEQVLKLAIPIFEVAFPGCQALFLFDNATSHSAYAPDGLRASTMNLRP
GGGQAQLRPGINSLTEEIQPMVLPDSSPKGLQMVLEERGLWRPKLRVQCCRPDGKKNKECLNGGTCCARALMAKEPDFKA
QRSRLEEEVDLKGHLVAFFPKYHCELNFIEYYWGAAKRYARRKCGYNIRALRKMVPECLNSVKPTLIWKFWARTERMMRA
YHEGIAYGTPDFKEKVTKIYRSHRRVSDSQTVVYN
>Mariner-3_SM#DNA/TcMar-Stowaway 202-1512 [Schmidtea mediterranea]
MNTENLHSTYHLSNEERSLIFQDFLMNMSSRNPPKLKHGTINDISAKYNVSRASISKLWRNASEQLRTDEIVIDSSSMRI
NCGRKRKNYDDKLNDIKKIPLNRRGTLRSLSCASGIPKTTLFRNLKEFKLLRRVSSTVKPLLTDRNKIERLTFCLSYIKT
DGCFDNFFNHVHIDEKWFYLSKVKRSYYLTMDEEIPHRTCQSKRFITKVMFLAAVARPRGDIGSENYFDGKIGIWPFVYK
EEAKRNSKNRMKGTYVTKNIESINSKEYKKMIKQNVFPMIRAKFPRSNDIIYVQQDNAKPHFNEDDPDMLEEGSKDGFSI
MFKNQPPNSPDMNVLDLGFFNAIQSIQHQHSPKTIDELISCVSNAFDELHPDKLDNVFLTLQQCMEETMLANGGNNYKLP
HISKAKLRNNGTLPVSLTCKPEAILTARQNIDEQTL
>FB4_DM_tp#DNA/TcMar-Tc1 1442-2453 wised with Tc1_DM [Drosophila fruit fly genus]
KNFILVGRGQHYSQGKRMLILKLRKEGKTYKDIQKTLKCSAKMVSNAIKYKWKPENRGTKHKTTDIEDRRIVSYSKVYRF
ASFRDIKSELNLGISDVTIRRRLLNQNFSARSPRKVPLPSPRHIKARLSLAKTYLNWPVSKWRNILWTDGSKIMLFGGTG
SLQYIXRPPNTEYHPKHPVKTFNHGGPKIMVWACFFYNGMSXLWIMIYGIIDQNAYVNILSDVLLSYSEXNIPLKWTFQQ
DNDQKRRCKSAKNRFTQNRIDAMPWQAPPSHLNPIENLYGDIKQFVSKKSPTSKTQIWQVVQDTWAKIPPKPCXDLVDFM
PRGCKAVLANKGYPAKY
>XP_470629_tp#DNA/TcMar-Stowaway gi|50920537|ref|XP_470629.1| Putative transposase [Oryza sativa]
MEEEEYEIPDLNLDPGVQEVLQDEGDGIPDLNLVPAVQGEDAFQYEDEELPDNQCFGAHEDEHPGPAMQAVELSNGRSAQ
EICHLNMEPANYGEDDIVFDDDEFYVLQDQSNYADEEDFDVYSPYMDVVFDEDLHTSSDEEDTQQDNIKRRKYLPEAEKK
AIYGALLASTINGKLADRDTTEIIAAMFDVTRRVVQDIWTKAKKCLAAGVEVDFKSKKPGNCGQKRSDIDLDQVLALPLN
SRCSIRSLASALNASKSQVHRLVKEGALRRHSNSIKPYLKEANKKQRLEFCVSMLDAATLNAEPRFIDMQNIVHIDEKWF
NATMKNKTFYLVFNEDEPVRCVQNKNAIDKVMFLSTLAKPRYDEEGNCYFDGKIGIWPFVRKEPAQRSSRNRPKGTLVTK
SIMVSRETSRAFLITKVIPAIASCWPREDVGKTIWIQQDNALTHILPNDEAFALAVAQVGLDIRIMNQPPNSPDMNVLDL
GFFASLQSKTYLKNCSNMDELISNVDEEYNEYNSNLVSRVFLNLQACFIEVMKADGGNGYKIPHMNKDRLERLDMLPTSL
TCDIALYNKVMQTLLN
>Sagan-2_MLP#DNA/TcMar-Sagan 165-2446 FGENESH prediction 3 introns (774:847, 2076:2161, 2259:2355)  [Melampsora larici-populina]
MAINKAKRARREREEVKINLIKSQELEETTPPVPTTLTLTTPAIPAIPAIPATKPPKTERQMEDINHRYLELDNSHQAAN
AYHELHPGSIKEIINRSHQLEELREFNFLRKKLELESSKTASIPASIETAMCSMRRQQNSDPDWEGAGVHHARKIRQLAA
FVILHQRLPEENRGKLTVHSCMLDNMGFLKAITDWIATVRVGKVTPASLAHQVNSIILPSFPEYQKTICRTTANRWMHKL
NFSVKAYSKCLYYDGHERADVVLYRHKYLKQIDELCKNSKTYAGDDLDKITEPNLSGSARELVRVYHDESTIHANEESST
HWAQPKDCDLRSKSLGKLIHISDFICETTGRLVIPPDHMTDLQEKDAAVIITPGKNSDPWWDSKQLMHQIEFRAIPIFEA
LHPGAQALYVFDCSSAHESFGENSLRAANMILGTGGAKPQLRDTVIPSDDPNIPIELCGLPQSMVFPSDYSDGKLAGKSK
GIKQVLIERGLWTYHEDQRKSKQLSPLKLKCEDCKRSGLAKDKITRAERILKEAVNSMEGESGEEFPEPPELLSDQPKDC
CWFTIISAQSDFSEEKPIIQKIIENAGHLCIFLPKFHCELNPIELYWCLIKTKFRLLSYTCNNFREAKDLFNRIRKECPL
ATIRRQAAQKSIAPDPAAQTYRSHRCVARTAGNV
>Mariner-2_NV#DNA/TcMar-Pogo 384-1914 via tfasty with Mariner2_MT_tp, 1 frameshift. [Nematostella vectensis]
MASKQARIELSLKKNVLKLAAGGSSQRKLADQCKVSKTQISNIIKKKHAIEVAFEQNSNSEKRRFVSAPNDRINDAIWEW
FTRCRAMNIPITGPMIQAQALKYAETFGIGDFKASNGWLESFKCRKNIHCSILSGESSSVPTETVDECQSRLEALCEGYR
AEDIFNMDETGMYYRALPDRSLVVRGADCHGGKHSKERLTAVLTCNMTGELQTWIIGKSENPRCFKNLDKNSLPVVYKYN
RKAWMTSPLYTEYILDLDRQMRLQNRKILLFEDNAPSHGMEDIELTNIKVVFYPPNTTSRLQPLDQGIIKNLKAFYRKKL
LEKVVSAINEAEFSDACSVARKVDVLDCCMWIPWAVRQIKPETVTNCFTHAGYPRSLLTDDRLVQGAQNAAEPDLQHLIE
TVATGLNITEPLTDDDFVHHDDQVPTEDDDNENWVPEVIQEHVLGKDSVPETADDDEECDETSDGSGSLEPMSVIKDAKT
ALYWAQQLKLFSLEKNMTGIFPISSELEDN
>VENSMAR1_tp#DNA/TcMar-Mariner 182-1225 [Ventiella sulfuris]
MDKIEYRAVINFLTKEGKNAKKIHDRLVAVYNDTAPSYATATRWHKKFHHGRESLEDDPRVGRPSEATSEDIVDRVEATI
TENRRVKVEEISLEIGISHGSVCTIIHHHLGMSKVSARWVPRNLSLPDRLQRHTSSEELLTTQTQRAFESRVVTGDETWV
HHWDPETKNESMAWKHKGSLVPLKFRTQPSAGKIMATIFWDAEGVLLVDFQPRGSTITGEYYDGVLGRLRDSIRQKRRGK
LTRGVLLLHDNTPVRKARRAQAALRDCGFEQLNHPPYSPDLAPSDYFLFRQLKSSLRERRFDNDDEVKEALMMWLEKQSE
SFWLARYQSLRDKWFKCIQVKGNYFEK
>Sagan-1_AAn#DNA/TcMar-Sagan 169-3621  [Aureococcus anophagefferens]
MAKKSPTRKFITTSMVPGCPARWRTHNEANLAMAKYVAVVEGPGKAGRKRSAGGDEGDVEVGGGGDDDVPDAPALAAPAP
DGDGGGVEDGDDDDPDVPALAAPAPEGDDGGDDDXEEEELAEDDFTGCGGDLVDWTPKVTLRRPRGAGAAAEARRRKRSS
LGHRTMDALAALRRGAMRLIGAVGGASRRRRHQSGHRGDDGREDNRRRDEENRRARVEEVTERNARRYQPMIDRLRGHLT
AETTYXLXLAYDPEDPDSRLEMSDSELRRTRTKAERVERXLRYLXDFNTGEPGSLTAXECAQKAADEAYGKVGXRTVMGY
FRNQYLPSEGYFLADERGSYPRDSWTSCFLSQDDLVLRLNLLVRANLRTMSLEKLAELMSEVMMMKITDNFDGGAPTGSK
TIRSTRATTVEPDWYVDGDVDGDVRGFFWKRYGLSWPIKKGHGVYTIAHSDKIQLEYRDRKKSYMTDVHERAADDRNKRF
LPLEKEMEVLQHKWIQLSLEEAEKLFVAHEKTNPNARQDLEPHRVKVEIDGASVDAVEFNVNASSAFEAYVESMPMGGSL
SARRPSDAPPLVAIGQDEMCRHSHEYTSKCWTHKGAAPIDKKSRGLAVHVSGFVSRAQKIGFGFPLDEATLAAINAHRAG
KQYPVTMSGVDVGQAWIKVQEQQGVAQPTKDMPPLKKNVPAGYWDNAVDICAVGLWHMNPGANKEGWWLGVHIIVHTYDV
IQAFEFVYGKLSGAATPCQALFYFDHSAQHGHSKPDALSTTQMNLSWGGDQPIVRDTVIERSEGFLGPFEPVLKPGXTQR
GYFDDPSAPPVDDPAAPPGNGRRATAKPKPPKHGAEYYRASALSDANATAEAKIRAATTEAGVAWVQIXADDAKAYVQAR
SIKEQGKRAATAPKDKKVGSLRARAATYHSENASITIDLGSKPPGYDEWRAALEVHAASVTGFXGQPKGGKQLLRERGLW
HQGMSWTGKKDTYGVPETVDIDGVARSTCAKDVLAACWDYQNETSELEQMVTDLGHRAMFTPKGHCELAGEGIEYDWGVA
SRWKRKNGRDEDQHLQEDTLRSLSPKVLPVLRVRMFERTAWRYKQAYRRVTRGEATAGEFAEVERLQKEIRRHRDAEVEL
AALEGRRENPLAALDAPPGTAPVRAATAAGP
>Sagan-1_TMe#DNA/TcMar-Sagan 262-3353 via genscan and genewise, 3 introns (358:493, 1029-1128, 1441-1956) and 2 stopcodons [Tuber melanosporum]
MVTCRVIVYDAVIRKKSKYQEKGRRGEKERVKKRQNQHLQKARSLKTIRSPFVESEDPEFDIPEDLLARIDVEDEPALYH
GIDILLIDPDQTENEVEFTEDEEDIPSEMCSNYVSESLWSRMKNVSRECARNTKLPYIRGPKPTLRTQQRSKLRAKEMAM
AASKCIPLIHSFLVPVSKRNALSSAQSDPQRPEGEKELEEESEHILEKPAEEIQSKKAQLTGQNLTRHRAVLAFLSLQLS
RKPAETRLMLATAVARYFRRGLYFARKLISWEILWCKExVIPEGKQGCFSKTRSWLDDEGVQLAVREWISGVGEQKESQI
GDFARGGGSEEGLGWGNYEAGIETIIPEPIASSATVRNHRVQVRTARTWLKKIGFLYQGVQKGVYLDGHEREDMVVYRNE
VFLSQWARYKPRMVEFEPDGSWKIPTSLPPGEKRLVFITHDKSTFNANDGKRRMWMARGKQPLRPKTKRKGIMVSGFLTP
GGRLRVPDTISNSQLLEDPMWPLRNGQRIRDALEFLEYGKDDYFTEDKMVDHTMQIALPIFRWAFPGCQALFAFDNASNH
SSYAPDALVVSRMNRNPGGSQAILREGFIHSKQRPQTMVFSENHPNVLLRGKAKGIEQILREGVLWRKCRSDGFAFLLEC
PTRNNRPGCDPLVVGGCCARVVLGLERDFKEQKGRLQEELEAAGQVVIFYPKFHCELNFIERFWCATKYYARENCQYTLP
GLREVIPKALDSVSTYSIYHYFLGCMRVIEAYMSYLVYxTPAFKQAVYKxHRRIEDKSKW
>Sagan-1_RO#DNA/TcMar-Sagan 331-2439 [Rhizopus oryzae]
MPLLPYSYSKTMPPLNARKRAYLKKHRNETSQFVPHLRDQDWDMSDSELIELSNITEMRNADPTISMSINNVLLDKNVKR
NRPLSYSKTSRSTRWRREKEAKSVNDKGKLESFGFVSIAPVVEASSPILSKNEIQLLRIQEMLPKLQMYVKPVMNSKDKE
NTVERYSFLQYSSIYTYFIKRIEGIPITLASREAARIHWADNSVAYRAMTIVKWAKEYLSQGVLSRHRQGVHSKRKSFLN
DADIKEMVLEEIRRMKPAERSLVTIKKFIDEVVIPSKLGVIMQPVPESTXSNYLHEWGYAYRKNKKTIYFDGHEREDVVE
YRNVWSKRMLEYMEKMDFYSGETEEDVLEPNALPEGERKCVFVTHDESTFYANDGKNDMWLADGENYIRKKGPGLSIMVS
EFQCPCHGTMKIQKWSSRKLFKAGTARDGWWTSKHMVEQLKEDAIGLFEALHPNCVAVFLFDNSSNHGAFADDALVASRM
TLNEKPWPLSEKFQFRDTVYISRSTDMEEVQSFYYEKEIKKRDKKGNLKTKKVRYFKGIRKILEERSLWIGHDLEGKKWK
LHCGAPDRVNPICCALHFLENCPDFKNQKSALEEVIINSGHVFELYPKYHCECNWIEMYWGAAKREARLKCDYSFKSLEK
NINLFLDKAGDLAHIRRYFRRSMGFIEAYSRCTDGREVVQEVKKFVEKKYLSHRKVRVPSDLV
>ITmD37E_Ele5_tp#DNA/TcMar-Tc1 152-1168  [Aedes aegypti]
MHSKQEELRQQILGAVIDNPGQSHRWIGKRLGIHHSTVSRVVKMFQETKTIERRAGSGRKPKTEYPEKARKIRQYFKNNP
NLSTRDVAKKVNSSKWFVQQTMKRAGLRVFKVRKAPNRTDKQNTVAKLRARKLYREWLVKPGCLVMDDETYIKADTKQIP
GLEFFVGTSRMEVPEKFRKRKMDKFAKKYLLWQAICECGRYSKPFVTTGTINGQIYREECLQKRLLPFLRSHRGPTLFWP
DLASCHYAKPVMDWYEAKGVNVVPKEANPPNTPELRPIEKFWAIMKKKLKKSGKTFKTDEALKKNWEKLCKKDGQSLAQD
LMSSVKRNVRAFSLGEEIQ
>Mariner-2_DRh_tp#DNA/TcMar-Tc1 337-1338 Mariner-10_DF_tp near-identical. [Drosophila rhopaloa]
MGRKKHCTLEEKKIALNLQREGKSLREIATSPGRSVCFIQNALKSKDPTEKRGRKKKSSQTTDTRIVSLAKKDPFMSSKS
TAAEIGNEISSRTVRRRLKSAGLTGHIARKVPLLRKKNLQMRRQFAQNHLAWSGPEGSKKWNNVLWSDESKINLFGNDSR
RYVRRPKGKEFDPRYTKKTVKHGGGCIMVWGCFSWHGVGPIHRIADIMTRFGYKSILADVMLPYSEENMPLRWVFQQDND
PKHTSKLVKAWFTENEVNLMSWPSQSPDLNPIESLWEHLKRRIGTNTFRNAAELWTFVQKTWYDIPMDTSSKLIASMPKR
IAKVVQXKGGYTGY
>Mariner-2_DR#DNA/TcMar-Tc1 307-1283 via tfasty with Tc1-2_Xt_tp, 3 frameshifts and 1 stopcodon. [Danio rerio]
MGKTADLTVVQKTIIGTLHKEEKSQKAIAKEAGCSQSAVSKYINSKRKGKCGWKVRKGKKIKCLEKVHRYDRSLERIVKK
GTEAGVRASRTTTYRRLHDMGYSCRIPCVKPLLNQKKCxKCLCWAKEKKYWSVAQWSQVLFSDESKFCISFGNQDPRVWR
KSRDTKVKLLKSSVKFPQSVMVWRAMSYAGVGPLSFIKSTVNAALYQDVLEHFMLPAADKLFGDDDFIFQQDLGPAHSAK
ATSTWFTDHGIPVLNWPGNSPDLNPIENLWAIVKRKMREQRPRNELKADIKATWATITPQLCQRLIASMPRRLDAVISAK
GGPTKY
>Mariner-2_DT_tp#DNA/TcMar-Tc1 350-1342  [Drosophila takahashii]
MGRGKHCTAERRDLIKKLISDGKTYVEVQNIIGCSSTMVRNTIKHEPANETRGRPKILDKRSVDRLARQSRIEPFASAAS
LKKRCDLNVSLETIRRRLRDNNLISRSPRKVPLLTKKHAAKRLKFAREHLTWPLEKWRNISWSDESKIVKFGGRGSRQFV
RRPPLCAFTPKYTLKTVKHGGSSIMIWASFSYYGVGPIYWVKTIMDRYLYVSILNDVMLPYASEDMPLIWTFQQDNDPKH
TSKLAKEWFAANEVDVMEWPAQSPDLNPIENLWCDVKRAVSELKPSNNFQLWEAVQRSWSSIPLERCQNLVNSMHKRCAS
VIANKGYATKY
>Mariner-2_GLuc_tp#DNA/TcMar-Tc1 325-1350 Mariner-3_GLuc_tp very similar [Ganoderma lucidum]
MTVCTPTKRARILALRDSRFGQPMSFRKIGSILGLPRSTVHRNWKTVSQTGDCYAYKPRPGRPRKFSERDTRHAEIALAN
GSARDATDVQRQLFPDVSSRTVERHLEDIGLHGRVRRKKPYLSDLNVEQRKVFVAGTGDWDMEKWRLIVFSDESKFNLFG
SDGRQYCRRRVGEAYLPRNVKKVVAHGGGSLMVWGCITSKGVGRLHRIRGNLNAPKYCALLEESFLGTLRDHSLSPRSII
LQHDNDTKHESRLAKAWFDEHHILLLPWPSSSPDLNLMEHVWEELDRNLRRRRQLPRNLNELWTALQEEWYALDIELIRT
LYDSIPDRIAAVKDAHGSYTRY
>Mariner-2_DVi_tp#DNA/TcMar-Tc1 348-1382  [Drosophila virilis]
MPGKRTSFDIAQLAYYNHQIGKTVIELSEMFSLSRQTIYNILDRAKNENRLDTKVSSGRPRKLSDRDERKILRKVEKNPK
ISIRNISRDLEQESGINVSHETIRKILNSNAYTSRVARKKPLLSNINIEKRLSFAQMHLGKPAGYWDDVXFCDETKIMLF
YNDGPSRVWRKPLKALEARNIIPTVKFGKLSVMVWGCISSKGVGDLAFIENTMDAAKCLEILKTYLISSAHKFGFFDGNR
PNFKFYQDNDPKHKAHIVKMWLLYNCKKVLDTPPQSPDINPIENVWSFLKKKVAKRSPKSRDELKADILEEWIKIPETYN
MDNLVKSMNRRLQAVCAAKGRHTKY
>Mariner-2_DK_tp#DNA/TcMar-Tc1 346-1349 via tfasty with Mariner-2_DRh_tp, 2 frameshifts. [Drosophila kikkawai]
MGRNSHCTKEEARLVLSLRKDGKSLRAIAKLMKRSHNFVKNAIRKETKTESRGRQKKTTETLDHYIVSLSKKDPFKSSKA
IAADIGNSVSAPTIRRRLQDANLPGRIARKVPLMRKKNITMRQTFARDHKDWVGCIGEKKWRNILWSDETKINLFGNDCE
RNVRRPNGKEFHPRFTKKTVKHGGGNIMVWGCFSWYGVGPIYQTTNRMTAEEYKSILETVMVPYAEENMPLRWVFQQDND
PKHTSRLLSKFFEDQKVDVLKWPSQSPDLNPIENLWGDLKKKLAKYSFSNKAQLWDGVQKLWYETPVETCQALIKSMPKR
IAVVTKNRGGYTGY
>MARINCE1_tp#DNA/TcMar-Tc1 156-1166 Includes gi|7511593|pir||T33011 probable transposon protein K03H6.3 named CemaT1 by Claudianos et al. [Caenorhabditis elegans]
MRASPMREPIVRFHRNGVAAKSIARRLKVSEKLVSTTIARFKELGNFSDRSGRGRPPTVTTPAMIKKVRGRFRHNSGRSV
RAMARELKISQSSLCRMVKNNLKLKAYKKSTCQFLSEAAKIKRKDRAMNLLRRFRNGAHRKVLFTDEKIFCIEQSFNTQN
DRVYAKTQPNSRVQRTGYPKGIMVFAGITANGKTPLIFVPQGIKVNGNNYLDMLKTELMPWVKKHFKKTKWTFQQDGAPA
HKHKNVQAWCESNFPDFIAFNQWPPSSPDLNPMDYSVWSVLEAKACSKPHRNIDSLKDSLKKAWDELDINYLRATVDSFP
RRLEACVAANGDIFEL
>ITmD37E_Ele6_tp#DNA/TcMar-Tc1 96-1121  [Aedes aegypti]
MCICLRCVSFTSRCAIVVKMESEEQQRRKEILRTYLENPDLSHRAISRKLGMVHSTVSRVLNRYHERLTIDRKEKSGKNG
SPYSVKDHKRVVQAFKRNPNSSVRDVAKKLNLSKTFVQDAKKREGLHTYKVQKAPNRDERQNTVGKTRARKLYTQMLTKP
HCLVMDDETYVKADFRQLPGLQFFTAHHKFDVPEDVRKQKMSKFAKKYMIWQAICSCGKRSTPFVTTGTVNGQVYLKECL
QKRLLPLLRSHDGPTIFWPDLASCHYSKEVLEWYKAKEVNFVPKHLNPPNAPELRPIEKYWAIMKQALRKHPKEVKSEED
MKKKWTATQKKSWSKCCTGPYE
>Mariner2_DM_tp#DNA/TcMar-Tc1 56-802 [Drosophila fruit fly genus]
CHSGALVVPFKRGYCKVLSRHGSVAIMRWNSEERAFAVEAYFSSGCSVIKTQRAFRNRFNLAPLAPVPDRKSIVTWVTTF
RQTASATKRRTGVPRPVRSPENIEAVRASILRSPRRSARKHASALGLEDLGDTWFQQDGATAHTSRASMAVLREHFPERL
ISIRGDLEWPARSPDLSPCDFFLWGFLKSRVYVNRPRTLQDLKTNIQEEIANITPAMLTRVTTNARNRFTQCMENGGRHL
SDFIFKKI
>Mariner-2_DBi_tp#DNA/TcMar-Tc1 117-1199 1 stopcodon. Mariner-28_DF_tp identical. [Drosophila biarmipes]
MEQYTPRERPxIVEIYIQQNKSIVKTQRAFKKLKNVKSAPSKNTIKRLYEKFTTGEALSNPKRPNKSRPRRSDENIAAVR
ASVEMSPRTSQKRRSQQLGMARSTLQRIFRVDLHLFPYKIQLTQRLLLTNKPRRLESAQRVIEMAEDDDQFWNKIIMSDE
AHFTLNGTVNKQNCRIYATENPEKIQEVPLHDEKVTVWCGVSSKTVIGPFFFQNENGHAVTINQERYRDMMTNFVMPIIR
RKRMRQFWFQQDGAPPHTSRITIDFXKKLFPGRLMSKSGDLDXPPRSPDLTPPDFFLWGYLKSKVYVNKPRTLEELKDNI
REEIAAIPAEMLAKTMENAAKRAQYAINARGGHLKDIIFKN
>Mariner-1_DBp_tp#DNA/TcMar-Tc1 351-1343  [Drosophila bipectinata]
MPRGLHLSEEDRGMIKGLAESGQTISYIAARLNRHRNTISNFLKNPESYGKIKRSGRPTKIDERCKRRIRRLAVQDNKSC
MEIKGQLNLEVSKRRINQILNQNAMVTYASRDPVPRLLKRHITARLQFAEKYKFWSEEFKNVIFSDEKKFNLDGPDSCQK
YWRDKRQPRQVCHKRNHGGGSLMVWAGFGYAGKSPLCFIPTRTNAEIYIELLETVLIEFAGDIYGDEWIFQQDNAPIHTA
RKTKDFLAARKIPLLQWPAISPDLNPIEDLWGILSNKVYKNGRQFDTVNDLKKALIKEWDQINPTTLKNLANSMPNRINQ
IFIMKGSHINY
>31202999_AG#DNA/TcMar-ISRm11 gi|31202999|ref|XP_310448.1| ENSANGP00000007326 [Anopheles gambiae]
YDQGKNMKEIAEMLHLRHSTVHGIVKKYRETGVIEATKRTTPNTKKLSQREIASIREWIDEDCSQSLKELVAKLREHHQV
VVSTTTVARAIKGFHYSFKRVHKVAERAVLPGLKEDRKMYAERFLQLPNEYADDAIIFIDEVGFQVNMRVAYGRSPVGER
AVKVVPALRSRNISIVCAMTRKGITHYQHRNSAINKVFFIEFLSDLKTKIVDLGIGRCILIMDNVPFHRSIDVRNAIEEG
GHTIMLLPPYSPFFNPIENLFSKWKSLVKRSQPSNEDHLMTSI
>4902869_SM#DNA/TcMar-ISRm11  gi|4902869|emb|CAB43594.1| ORFAB [Sinorhizobium meliloti]
MGQALSDDLRIRVLKASAAGMSARQAAARFGVGISTAIRWIARAKEGELTPRPQGWRRPSAVDAHEEFVVALIEERKDVT
LDEMVQRLSVERQVKISRSALGAWLRGRGWTFTAHALEQDRPDVLKPRRVWFDGQLDLDPEKLIFIDETGLSTKMARLRG
RALRGERCRAGVPHGHWKTTTFTGALRLTGMTAPFVYDGAMNGNVFLAYVEQVLLPTLQAGDVVVMDNLPAHKTSGVRDA
IERAGAKLMFLPPYSPDFNPIENAFSKLKAMLRGRAERKIDALWDAVGALIPRFTPDECANYFRAAGYDPD
>32479260_Ensifer#DNA/TcMar-ISRm11 gi|32479260|gb|AAP83799.1| transposase [Ensifer adhaerens]
MSKALSVDLRARVLAAVSAGASHREAAERFGVSAASVSRWRNLQVRQGHVRPGPLGGDRHSYKTEANADAIMSWLEEHRD
GTLFELRDALAAQGIAISKSALHRFLVRHNQTRKKKTGHAIEQARPDVLELRQRWFDEQLDLDPSRLVFIDETWTATNMA
RTHGRCTRGERLRMGFPHGHRKTTTLVAGLRNTGMVAPLVIDGPINGEWFEAYVAQVLVPTLKPGDVVILDNLSSHKRPA
ARALIEAAGATMVFLPPYSPDFNPIEKAFSKLKAHLRKAAERTVSGLWDMIGKLVHLVAPKECRNYFNSCGYDPA
>Mariner-2_SM#DNA/TcMar-ISRm11 584-1612 [Schmidtea mediterranea]
IKNYSSYRISEIDKIRIINAMENGEDYFHFGKLLGIARNSIKTIIYKYRKFGKLSQGKIGGSISKISEENGNKLLDFVEK
NVYASLEEMKNFLISENLSVSTNTISRFLENHLITTKQIRPSVAERNSDRVLDLRMEYTTRYLEEAWMDSQLIYIDECGF
NTWTSQKLGRNKKGERLYATLPTNRGRNMSLALAIGVNGPVHHKLVVGSYKKDTYQIFINEITVKLNGTGFRLIHDNASI
HGGAISLNNVIEHLPPYSPFLNPIESVFSKIKFNIRKSISRAGGLSSMNFQSRFDFLKDALDNELVKEDYRDLTNYFWHI
RRFFPKCIKKIHIFGDYLLLLT
>Mariner-2_ADi_tp#DNA/TcMar-ISRm11 163-1221  [Acropora digitifera]
MSKVNKCGRTYNPGEAIGESLRASIIDRMLLDGGDPATGFFGGRFKNIGDCFGVSAPFVSKLWKTFCLQGDHMPQKRSSG
NPSHLKPEDVQLVEFLKKEKPSATLASIKETVENYCNLNGGTSLSAIGNTVRNRLPDGPFTRKKLTRPKAEKFTPQNLAY
CGQFLNFISALPPEKIKFFDEAGVNSGTGNPVYGSSLKGTKSIEIAAIPRGVNITLNLLVGLEGILYANTLDGASNSFTF
LNFFGEAGQATSALGNPAIEQGDFIIMDNCAIHRFEAGTALQTWLMDMGANVIYTPSLSPEFNAVELVFNKLKILLKREE
YVPLLKENVHVAIYESLDQIDTNDMYGFYSLIL
>2072514_Nostoc#DNA/TcMar-ISRm11 gi|2072514|gb|AAC97588.1| orfAB [Nostoc sp. PCC 7120]
MKAYSLDFRQKIFDTYKTGGISQRQLANKFCVSLGFIEKLLKQYRETASIAPKVRTKQTPPKLNEEQMKILEEIVEAKND
LTLSEIRFILKEKTGITIGISTVDRMLQRIEISLKKKTLHASEKETERVQLLRVQFWLQLQGILAENLVFLDEAGANLSL
IRHSARSKKGKRAYGCRPQKRHQNVSIIGAIALKGVISQYSILGTSDGLTFEAYISQKLVPKLWEAACVIMDNCSIHKGG
DIEKLIESAGAKLIYLPPYSPDFSPIENCWSKIKNFLRSIEARSYPDLAKAIESAFNQVSLNDIYNWFTHSCYCTSPD
>52548315_Archaeon#DNA/TcMar-IS630 gi|52548315|gb|AAU82164.1| transposase [Uncultured archaeon GZfos11A10]
MTEEEIAELLGVSVRTVRRWISKYRKDGLGGLYDKERSGRPRKVDEKVENEINNTMKSDPTDFGYKIGFWVIPLLCLHLL
SVTGKKISGETIRRALHRQRFAFRRPKLWAGPAGEMPEEISKALKEAKKGAAVLLYGDETTLHLLPVLRRMWMRVGEQAK
ILTPSSWNKAFSVFGALNTVSGELFWEIFDRKNSDYFIIFLERLLSAHPDKIIYFVVDRASYHTSKKVKEWLSKHERIRL
VYLPPRSPQLNPVEPLWRWLKGEVAANRTYNDLQPLKCGCREQLSDLTHEDALKITGALKIVGVTN
>37927529_Eco#DNA/TcMar-IS630 gi|37927529|gb|AAP70294.1| TnpA-like protein (97% identical to 15149177 in Shigella sonnei) [Escherichia coli]
MPIIAPIPRGERRLMQKAIHKTRDKNHARRLTAMLMLHRGERVSDVARTLCCARSSVGRWINWFTHSGIEGLKSLPAGRS
RRWPFEHICTLLRELIKHSPGDFGYQRSRWSTELLAIKINEITGCQLHAATVRRWLPSAGLVWRRAAPTLRIRDPHKDEK
MAVIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKSSALFI
ALLKHLKATYRRAKTITLIVDNYIIHKSRETQRWLKANPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLL
KKVRHFMETASPFPGGKHGQAKV
>28173597_XO#DNA/TcMar-IS885 gi|28173597|gb|AAO32805.1| putative transposase [Xanthomonas oryzae pv. oryzae]
MPVSAVQPSMKKRDGRLVSRAVLEEMRLMALQRMGEGESPAEVASSFGLHRGWAYKVLARAQEGGAGALMTRKGSGRPRT
LTPAQERQVFGWVNGKNPRQHGFAFGLWTRQVVRELIEKKCAARLSLASVGTLLARLGLSPQKPLQHAYQRDPLAVAQWE
KQTYPAIVTHAKREKAEIDFWDASGFRADAVQGRTWAVKGVTPVVAVPGQRQSISAASAVNSKGGFWFAVYSGGLNGELF
VALLKRMMKGRRRPIHLVLDGLPAHKTRGLRDDVDSLKGRLTLHFLPGDAPDLNPDELVWSYTKRTGVARSPLRSGEKLA
DRVHDQLSDIAARPELVRSFFTHPSVAYISDL
>1256600_Synechocystis#DNA/TcMar-ISRm11  gi|1256600|gb|AAB72124.1| putative transposase [Synechocystis sp. PCC 6803]
MAYSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPTKVERRHRKLDWEALKKDVEENPDARLVDRAKKF
GVRPSAVYYALKKMKINRKKKELRYRERNREERVKYYRMLRELIKLYGSQAIVYIDESGFEAIQACIYAWSKKGKKVYEI
RQGKRGVRENLVAGRRKGKKDLIAPMVFTGSLNAEGFEGWLKLYLLPSLDIPSILIMDNAPIHRKTAIKELAKEAGHEVL
FLPKYSPDLNDIEHDFSALKRARMYAPIDTSLDEIIRSYCGV
>45368562_AD#DNA/TcMar-IS885 gi|45368562|ref|NP_990890.1| TnpA (almost identical one in Burkholderia cepacia) [Achromobacter denitrificans]
MEKENARKQTLEQLHERRKQVVRLHKKGIKIMQIVEMTGLSYPPVRATIDLFEAGGWGAIRPALRGRSPGDGRVLSPAQE
ETIQRMIIDKRPEQLKMDFHLWSRAAVSQLIEQEFGVKLQTRSTGKYLTRWGFTPQKPIKRAYEQSPAAVQAWLEGEYPG
IEQRARAEGAEIHWGDETALVNTDVRGRSYAPTGKTPVTMAIGGTRQKLSMIATVTNQGKTRWMIIDEAFDADKLIEFLQ
ALIKDAGKKVFLILDNLRVHHSKLVKAWVAEHQDQIELFYLPSYSPQLNPEERLNADLKQEIGKRVPVRTKAKLREAAND
HMAMLEQNPERVIGYFQDRYVRYAA
>Mariner-3_DR#DNA/TcMar-ISRm11 933-2049 via genewise with Mariner-2_SM#DNA/TcMar-ISRm11, 1 intron (1260:1392) [Danio rerio]
MPPVSKKYLYFVPLRIQRLPPSGGRGKLLNEEQELAIVNMVIADNEIKLKEIQSRVVEDNFVFGNIAAISLTSISRTLAK
HRVRMKHLYKVPFERNSERIKELRHQYVQRVMELEANQVPHEIIYVDEAGFNLAKRRRRGRNIIGKRATVTVPGQRGANI
TMCAAISNNGALLHKCQIGPYNTDRLLLFLEDLHERLVPEVERGQVGDHLPVYVITWDNVAFHHSRAVTAWFDANPRMMS
HFLAPYSPFLNPIEEFFSAWRWKVFDHRPHDQMALLDAMDAACQDITTEHCQGWIRHAKRFFPRCLAREDIRCDVDENMW
PNAEDRAE
>Mariner-7_DEl_tp#DNA/TcMar-Mariner 90-1175  [Drosophila elegans]
MASLGIGQQLHIISLVYSHCPFFCWCAKMSKFEPNKRHLREILLFAFHSKKSAAEARRMIVATYSESCISERTCREWFVK
FKNGDYDVEDKDRPGPAKKFEDAALETLLDEDSCQTQQELADSLGVTQQSISLRLKSLGMIQKQGTWVPYELRPRDIERS
LFTCEQLLQRQKRKGFLHRLVTNNKKWILYDNPKRKKSRPCINSTAKPNIHGSKLLLCIWWDQLGVVYYELLKPGESITG
ALYRTQLMRMSRALKERHDKVIILHDNARPHVSKVVKTYLETQKWDILPHPPYSPDIAPSDFHLFRSMTHGLAEQHFQSY
EEVKNWLDTWIASKDEQFFRRGIHMLPERWEKVVASDGKYFE
>Mariner-2_AN_tp#DNA/TcMar-Mariner 198-1244  [Emericella nidulans]
SIWCFSTLSTLFILIQLILPQLLSFLNTSFMMPRGGFHPVELRVQVLTLSAIGFSTEKISKSLNLSPRTVQSIVKKGRDR
GYRPEVSLRVQLEFVEDRKRSGRPVEITEATQNTVITSVTADRAGREKLSEILAYEAGISHSSVLCILHSHGFVIAKPSW
KPGLTEAACLRRLEFCLAHQHWTLEDWKRVIFTDETGVILGHRRGAIRVWRTVKDSHTRNCVRRRWKACSDFMVWGCFSY
NKKGPLHIYKPETAAMRKQADIEIEAMNRELEPLCREEWELATGLSRVHLRPNRGRVPKWNWNEKNGKLIRKGKGGIDWW
RYQTVCSLISIILYYRVVKHVLITYSTA
>Mariner_SI_tp#DNA/TcMar-Mariner 256-1272 via tfasty with Desmar1_tp, 6 frameshifts and 2 stopcodons. [Solenopsis invicta]
MNRDKLFFRRVFLHYFDLKKTAAEAHRLLSKVYGNKTLLEKTCRVWFERFKNGNFDVRDKERPGQPKKFEDVKLQELLDE
NPAQTLLELSENLNVTPIVVSKRLPAIGKIHKKGKWVPHELSENAILNRLTIAISLFVRQRKKSFLxRFVTGDEKWIYFD
NPKRKKSxVDPGQPSVSTPKRNIHEHKTLLCVWWDQKGVLYYKLLGPNKTVTADCYHQQLYQLSDVLMQKNPSVVNNRCK
VILLHDNARPHIAKSVKQVLVSSEWEVLPHPAYSSDLASDYHLFRSMQLTDAHFSGYKEVQKWVDEWFASKDTAFYRRGI
ALLPEKWEKVIENEENYFD
>SMAR4#DNA/TcMar-Mariner 165-1199  [Schmidtea mediterranea]
MEAVEYRSIIKFLVFKKKTGKEIFKELKDTYGKDAPSYSTVKYWVREFQGGRKSVFDEERSGRPVEIPEKITEKLVEIVQ
EERRISVKSLSKRLNISDGKVHTIMKGLGIRKLCSRFVPVFLTSEMMERRLQCCSNNLQIYSEYGRNFLSNIVTEDETPL
SLYIPESKRSSSEWKLSAEKPTKKLRSGTTHRKSMMLSVFWDSLGIIMLDFAATGVKLNAQYYCHLLEIVRTKRRKSRNV
PIWYLHDNAPIHTAAASASTMDNVGFSVLSHPPYSPDLAPSDYYLFRHLKKHLAGKIFENNDELKEAVEDFFDNWGPDFF
ENAFSELVIRWGKCVGNFGGYIEK
>SMAR1#DNA/TcMar-Mariner 254-1306  [Schmidtea mediterranea]
MNFAREDIRKLIYYNWKRGLVPSQIANEINLTLGKDTTNERTCRRWVANFKEGNFDVEDKERCGRPSLDINDKILALLEE
HNSTVEMSVELGVCQQTIRNHLLAMGMRYLCNHWVPHKLSEQQMANREKICNELLCKYAANDFLSQLITMDEVWIYWSND
GTYHHRSWRGAGDAPDVEVRRTLSPRKHLMSVFWDCKGVIMMDILPQGTTITADVYCEQLSRLVTAIQQKRRRLLGGGFH
QIHYLHDNARPHTAAKSVQKLTDIGFTVLPHPPYSPDLAPSDFYLFSPLKSAIRGRDFNGADEIQVVLDAWLDSKPRSFF
ADGIRKLPDRWRRCVLHNGAYFEHLSDTDD
>Mariner12_CB_tp#DNA/TcMar-Mariner 183-1138 wised with Mariner12_CB and Acmar  [Caenorhabditis briggsae]
RGAFLFEFLQGHKCSVACRKLCTVLGQNYMSYTTIKFWFKRFSEENYDLXRSGLPRVDLNEDISRALEEEPRVTSRELAA
SLNHPQRTIIDHLHESGRVPKFGQLAPPLLTDSLKPLRCDLAHSRLTMKRSTNWVENIITGDXRKRRWVPAEETAKTGIK
GELHEKKXIFSIWWDSEGVIFRRLLLDGVTINADLNSTQMEKAFQAYRLNCPKNSSLLMIHDNARPPTTLKTRQKLQMLG
VKVFCHPPYSPDLALTEYQLIRSLKNLLVRQKFHDRKDVKKWLDDVFASQSTEFYANGIAQLPSRWQVVIYTIGEYITH
>Famar1_tp#DNA/TcMar-Mariner 190-1218 gi|37907392|gb|AAP51085.1| transposase [Forficula auricularia]
MENQKEHFRHILLFYFRKGKNASQAHKKLCALYGNEALKERQCQNWFAKFCSGDFSLKDEKRSGRPVEVDDDLIKAIIDS
DRHSTTREIAEKLHVSHTCIENHLKQLGYVQKLDTWVPHELKETHLTQRINICDLLKKRNENDPFLKRLITGDEKWVVYN
NIKRKRSWSRPGEPTQTTSKAGIHQKKVLLSVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLNNAVEEKRAELTNRKGV
VFHHDNARPHTSLVTRKKLLELGWDVLPHPPYSPDLAPSDYFLFRSLQNSLNGKNFNNDDDVKLYLVQFFANKNQKFYER
GIMMLPERWQKVIDQNGQYITE
>Mariner-4_ADi_tp#DNA/TcMar-ISRm11 301-1377  [Acropora digitifera]
MNVNNKGRAYTSGKSCHDDLKWLIISKCLEHGGDPANCFLPVAFNTIAQETGVATNTVRKIWNQFCSARTLTPFSKGGDF
SSKLSAGDLALIETLKTMRGSISLRELQAVLADIGDVQDISLSALSKAIKSKLLSGKRYSRKKITHVAKERFTYENMVYT
QLFINYLSSKDPTKVKFFDEAGIKTPDCGTRLYGNLPVGERCVEIARKVESPNYTLNLLLSLNGAEYYNITDGPTNTVEF
WNFFEEAANAANITTGRPALEVGDIVVMDNLAVHHYEGGEVLEEYLADMGVELIFTPTYSPDLNPVELSFNKVKCLLNGR
LADTMNENLKIAVWEAVEAVSSTDARNFYSATSYLFPAV
>MARIAM1_tp#DNA/TcMar-Mariner 181-1206 [Apis mellifera]
MATDKVHLRHCILYEFQQGRNATEACRNLLKVFGEGTVSDRTCRRWYEKFETGDFDLSDKPRSGRPSLIDDDVVKAMLEQ
DPFLTTSEIAERLNSAQQTISDHIRKIGLVWKYSRWVPHELSQKNLDDRVVICTSLLARNKIEPFLNRMITGDEKWITYN
NIVRKRAYCEPGKPSPSTSKPNLTLNKRMLCIWWDIRGPIHYELLKPNEKLNSEKYCQQLDNLKTAVQKKRPAMXNRKDM
ILHHDNARPHAALGTRQKIAEVGWEILSHPPYSPDIAPSDYHLFLSLQNFLTGKKFKNEEDVERALVQFFASKDETFFKN
GIYKLPSRWQEIINNNGNYIIQ
>Mariner4_CE_tp#DNA/TcMar-Mariner 207-1173 wised with Mcmar1 [Caenorhabditis elegans]
WKSGARAAETAAKICNVFGRDAVTDHTVRYWFARFASGCTSLDDNDRSXRHSVMIDDQLXATVREKPDQTTRELATKLQC
SNHAISNHSYWLGYRRVLARWVPHAFSXQMQTRETICQSLLLTQQIKDFLANLVTGDESWLLYNNATHCSVWMYMTASRX
VQPKLELHEKKCLLCCFWDAKGMLFFELLPQDRPITPSTYSDQLDSLALAVQENHPRHSAVHLLHNNARPHVAKDTQAKL
QEFGXITVFHPLYAPDIAPSDYHXFRPLKMFLRDQKFGKFEDLKKAVSDFFDSRSPAFWKKRVDDLPNRWLTVVNNNDDH
MVD
>Mariner1_DYa_tp#DNA/TcMar-Mariner 183-1232 [Drosophila yakuba]
MEKSEFRVLIKHYFLRKKSITETKERLDKYYGDSAPSISMVKKWFTEFRCGRTSTSDAERSGRPKEVVMPEIVDKIHGMI
LDDRRMKVREVAEAVGISTERVHHILHEYLDMKKLSARWVPRLLTHDHKRNRVTISKECLAMFNRNPNEFLRRFVTVDET
WIHHTTPETKEQSRQWVSPGERAPKKAKVGLSANKVMATVFWDAQGIIHIDYLEKGKTITGEYYSELLDRFDIDLKQKRP
HLAKKKVLFHQDNARVHTCVVSMAKFHKLGYELLPHPAYSPDLAPCDYFLFPNMKKWLGGKRFGSNEEVITETNDYFEGL
EKTYYLEGIKKLEKRWTKCIELKGDYVEK
>BEL-17_CQ#LTR/Pao 119-5613 via tfasty with BEL8_AG, 1 frameshift and 2 stopcodons. [Culex quinquefasciatus]
MTPKKRYVRSNSVKLKELKRRMATILGSAEQIKVFEANYTADQANQLVIRIEMLDELWKQYSEVQEEIELLEDLSGEEIS
EERLVFQNKYVELKALLVSKLPNLSVNTEPTRVASNSASIVSQSVRLPEIQIPKFDGNPELWIEFRDTFKSLIHANPNLT
AIQKLHYLKDALIGEAYSSVANLEMSTEGYNIGWKLVEKRHNDTNFLIKRHISALFAIAPIKKESSALLMDLADQFDRHV
SILNKLEKTEEHWNSVLVEALSRRLDTTTLKEWEKDCKEGERPDFDALVTFIRKQARTLQSVKMSHTPTATQETKIVVKS
RSTNNFMIAEAAHKCPMCKAAHYLYECDQFNKLSPRHCFNIAKKYKLCINCLRGHHLAKNCNSSNCKSCGQRHHTLLHLP
PAVDGNSYNSNQRTTFTAFGQQVENLQVQTQMYCPPHLMGGVSGARHPNTIDSFVPGTIETPFAHVAQSNQTPSHTNYSA
YSAILSEGKPAQNHYNEQHKIRSANRAAEDSSGVLDTSRAKTEVFLATAIVRVEDRDGTNHFARVVLDSCSQCNFISEAV
ATKLRLRRTKTNTEVAGIGPGKVRVTESVTVKLRSRTRAFETSVVCLIIAKIPAILPSQNIDIRDWQVPRDVKLADPQFN
ISAGVDILLGAELFFSLLLSQSNxINVxYPLLQEALFGHIVSGMYAGRGANPSLCIISSLSGLDAILERFWQVDDFDRGR
ALSLDDRWCEDHFNRTVSRRDDGRYVVRLPIREDRRPFLGDSYNLAQRRFLANERRFGYDQQLRDDYLRFMDEYAELGHL
EPGLRTGKEEFNLPHHAIRRPDSTTTKTRVVFDASVKGCNQLSLNEILHSGPTVQPTLLSTVLNFRLPKYVFIADIEKMF
RQIWIHPEDRKLLKIVWRTNTQSPLETYQLKTVTYGTACAPFQAARVLNKLADDEGHRYPLGAHILKNHTYVDDTLAGRD
SLNEAIEATVQLRQLLQSGGFNLRKWCSNDRRVLQQIPTDLVEMPHEIEIDRSNTIKTLGLFWNPHEDSFGFKIPKLSAL
DKITKRIVASEMAQLFDPCGLIGSVVVWAKMFVQGLWYEKFAWDQELPEGLAKSWHTFRDQLPYLLEFRVPRRVVVSRKF
MLHCFCDASERGYGCSVYVVSKDQHKSYSNLLSTKSRVAPLREHDITRLELCAFLLGCQLIDTILTTTEFVAPVVFWTDS
SVVLQWIQTPPAIWKVFVSNRIAEIQRLMKGHTLRHVPTHLNPADRLSRGILPIEILNDKLHVHGPDFICESIESWPATK
FDKSVLSVVESERRPIVALFTALVQSEPEEIFTKFSELAKLLKVTVYCLRFCTILRERSKGQSLGKIQPREIDNALKTLI
RLAQSYSFPHELKLLEKCKAEDCTQTELNFKSLIKGLDLFLDEFGLIRIKGRLEKLSAPFDTRCPILLHDDHPLTKLIAR
SIHLQTLHGGPTLMLATLRQRFWPLHGRKLVRNIAYQCVQCFRCNPRKRVQIMAPLPTVRITPARVFANCGLDYCGPFLV
RPLIGRGAALKMYVACFICMVSKAIHLELVPDLSSQACINAIKRLIARRGRLLTLHCDNATTFKGADRELKELRNQYIAQ
FQTEMWNNFCLAQGITFHHIPPRSPHFGGLWEAGVKSFKHHFKRILGNKSLRLDEVTTCVTQIEGILNSRPLTPLTNDAD
DLSALTPGHLIIGEPLFSLPEPNVSELSINRLNRFQEMRRTVQDFWKRWTRDYVHHLHQRPKWHQGTRNPQVGELVLLKQ
ENLPPLQWNIGRITATHPGRDGRCRVVDVRTTRGTYRRAAAEVCLLPIETESSKVENPAQHQMQLPTSQPEL
>BEL-16_DAn#LTR/Pao 305-7496 via tfasty with BEL-4_DAn, 3 frameshifts. [Drosophila ananassae]
MDRENIAPKIIIEPAVEEASAQGLLDAQQEIGQEIARCIRNYKKDGPNRKQKASYFQTKLYILEEAWERFGENDEKIQGT
ARTESYIKYAEDLRTSCMKYAATFESSRDKLMQGTSHQEEAQEQVENQVQEQSPLVVPMDKRLAGLCRRQGELLESVSGA
LREFKASGGGPGDLLKTLWAQVQEIHLTVYEEFENPIDSGYNKQAYLQLQAEVQNALMAKVIPTTNSIDVQMARINLPKF
DGDAMEWKQFHDLFSCMVHDTNMPSVKKMWYLKSALSGNAERLIRHIELNEDNYLHAWRIIVGSYDNPRLIANTVIRRLL
HQSPVSDSAKSIQELYITTLETLASLKGLGINVSTWDAFLVVLLTDKLDMTNRSLFEQTVGNSVEIQPLQVMLEFLEQRI
RVLSSGKPTAAFKREPKNLACASSTSDKQSLCYYCKAPNHALYKCEEFRAKTASERLNWVQKQKMCVNCFKTDHKSKECK
GRSCFKCDKKHHTLLHLEVTNLHSPTVGAAAYKNYNLLATAKVAVQTENGQVAKFRALLDSGSQINLITERLASMLSLKR
HDTKLRIEGIGGQPRMSRARVTILVSSLHGDFSQRIEAFVLPHADQPAQPLTHCALKIPNECPLADPQFDKPGRIDLLIG
TEHYYSLLLPNQQKVGRDGAMLQNTKLGWIVAGRVKSKTQSAIACGVGVGEETDARIERFWKLDNLENQTKHRSPSEAHC
EKHFRNLKRAEDGRFIVKLPFAEHPSALGESKEIAIKRFLALERRLTGDVRKGYSEFMKEYEALEHMKFVPTTHVPNNHY
FIPHHCVLKPDSSSTKLRVVFDASCKTSSGKSLNDILHTGPTVQSELMAILLRFRIHKYVFAADIEKMYRQVWINPDNQF
HQLIVWRNDPSEDLKYYRLKTVTYGTKTAPFLATKCLNHLAIRSRDNYPLGSAALENDFYVDDCLTGADSVAEAVQIQSE
LNKILLPHGFKLRKWCSNNAELLQGIPKEDTVSDVKLGETLDQYSVKTLGLIWMPNKDKLCGRTQQSEALVITKRVVCSE
LSQIFDPLGLFAPVVVKAKIFMQHLWESKMAWDDELPLELQSDWKTYRSDLQSLNKLQIPRHIFDGKVPVTQELHTFVDA
SEKAYGAAIYVRATYKNKQTSVRLLCSKSRVAPTAKQSLPRLELCAAVLGAELTHRVRQDLRLSLDTVAGFFWTDSSVVL
GWINATASTYHTFVANRIAKIQEVTEQCQWRHVSSANNAADVLSRGTTASKLSSNSMWFYGPLFLYGSKESWTKMPAIIS
TNLEQKTKFASMAAAKDIFRGEIYNCRHSNSFYKLQRIVAYMLRFCYKSNRAPTKALCLEELSQARIIILRTIQQIEFNA
ERNQLKRYKTVDKKSSLVSLAPIVGSDGLIRVGGRLEHSNLSEDAKHPVLLPYNDTIVKMILRELHETNMHCGAQALRAI
ARQQYWIINDKTMARSILHNCVRCTRVKPKLMSQIMGNLPSERVTQARPFFNSGVDYCGPIWIHHKVRGKRPDKAYIAVF
CCFATKAIHLELVSDLTTDAFLAALRRFLGRRGKCQTIHCDNATNFIGANNKLKELETSIFSTNAQDSIVQHCNKREINF
KFIPPRAPSFGGLWEAAVKSAKRLLVSITATASYDELNTVVVEVEAILNSRPITPMSSDPTDESALTPGHFLIGEPLTAP
PDTNIIPGGKPLVKRWELVSRLKHAFWKQWSCEYLQELQNRHKWKHASPNIKEGLLVLIKEDNVPVMSWPMGRVLKTYPG
PDNLVRVVDIKTSSGVFKRPVTRLAPLFPEEINNKHPLDDTLKADQSDEPPVQRKKETLSSMPVILALMLLLPLAMATPI
KVTEFSNKPGIFYERLGTTRMVVSEWTMIVYYDLDPYWNDMKVLSGGVTELAHKCQELTNVAACSSILEHFKHIIAELEA
GNNLMHHSRQRRSPFNVVGTMANSLFGVLDSTYAEEMVKTITKVKGNENFLLQLLQNQTSIVDSTINLVRKGRLATNNRL
RSLEQQMTLINKQRGQYQGAHLEQAFMILTTQLNLLANGLQRMQSEITNVLTDARHKTISPILISPTQLRDQLDQMRDHL
PPDQILPVATTDVVQLYKIMYAQGSTTDTHAIFRITIPLVSSELLDVFSIVPIPIWESKGWTLYNLQTPIIAVNAHRDRF
IGFSEDEFKRCTSIKIDQHICFNHLTAYNVDSRCEFQLFNNKTGTECHRNPVHSSMVWLKTHQSNQWIFATKDSMELQAV
CSGVSSTVNIKATGILKLPIGCTARNFNISLTTFGTMTTEVQTSFSRFGNISEPLKPIEEPSEFGLRAQSPSIDDTELEI
LQHRLADLQRKDAPYQLDHQTTMSYTAFAISVIILILIGILIMRHRRSIWAPKLRGTTRSSIPEPTPRQFTIELDDG
>BEL-23_CQ#LTR/Pao 445-5760  [Culex quinquefasciatus]
MASLRDLFKFERGLLDSLANLEDFVENFDAKRDAARVESRLERLETVFKDFMENRARLESKHEQDLSSASEPKDPEAKEK
KQQARETNKVTRLDFENRYLDLKDFLVSKRVKPTAEASSLAPPPCQPLSSRFQLPSFKIPSFDGDLTKWMSFRDAFKSVV
DKDPSLSGVDKLNYLRSLVQFGASTIVEGVDVKETNFDVAWDLLTLRYENNKLISRALMDDLLNTEPIKRESYEALITLI
DSFERNLMQLKKLGLKTDDWSPILAHLLYSRLDTETQRHWENHHKSREVPDYKEMLKFLQDHLTTLQPLVNKKPRVQEHR
QEASKPTPKTKFGSTLTTTTSSQNKSCPFCQKPTHSPFKCESFLKLNPFQRYELAKKIGLCLNCLNPFHLARACPSSACR
VCGQRHHTMLHRRSTNTPNQELTLPHSTTNAQFQAQPSRASNSQSQSQTSAPPMLPSTSDQPSLSLAACTPNNANVVFLS
TAVVKIADSHGNTYLARALLDCCSERNLMSERLAQKLVLRRQNDPLSLQGVGSSQAVSKQSTLAKILSRWTDYSIDLKFH
ILPEFRLIVPSDCVQTQTWTHPIPSSLFLADPRFFEPNQIDLIIGAEVHYRLLLNGFIDLGPNLPILKETVFGWIVSGKC
STSSRPSSITMVCSNADLEKQVARFWELESCHSESVLSVEEKQCEEYFAKTTFRDSTGRFVVRLPKKEAVLEKLGESRAI
AERRFHYIERRLQNKPTLGKSYAAFIREYVDLGHMSIVDPRNDALPAQAKPYYMPHHCIERPESTTTKLRVVFDASCATD
TGITNDALAVGPVVQDDLFSLILRFRLEPFVLVADIEKMYRQVLVHPDDRHLQRILYRESPTEPLQTYELRTVTYGTASA
PFLATRCLKQLALEEEHRFPEAANVLARDFYMDDLLCGVETAREGIELSRQLIELLGSAGFKLCKWASNSSTILQNIPAE
LRENRSEFELDSSSAPIKTLGLLWQPADDVFLFKVPIWDVRAPITKRLVVSDTARLFDPQGLVGPVILRSKTFVQQLWKA
KVAWDRILGEKQQQYWKEFRTDLDALNTFTVPRWAAPGSQPVETQLHIFCDASELGYGACAYLRTESGNGTVSVNLLTAK
SRVVSLSKQINLPRLELCGALLAAHLYEKIAPNLPPNIRVFFWTDSMLVLHWLAASPSRWKKFVANRVSEIQEVTAGHVW
LHVPGVDNPADVISRGMTATQLIDCMLWWQGPSWLRQSSRFWPCIVRTSDDLFDKEQLEERPVVALPAVAETSIFGVTSS
LSELIRKVAYYRRFSYNARGCNQSNRRVGPLSTAELNESLLCLAKLAQQESFPKDLHAICTTGQVESTSKLKSLSPILVE
GVLRTRGRLQHADVPYDRKHPIILDNKHPFTLMIMRYNHLKYLHAGPQLLIAAVRAKFWPLRARDLARKVVHECVDCFRC
KPRTSDQIMGDLPAVRVLPILPFLNSGVDFCGPFYLRPPHRKAAPQKCFVAVFVCMATKAVHLELVGDLSADSFIAALKR
FAARRGVPKTLFCDNGTNFVGARRTLNEFLRLLKAQQVQDQVVRSCSADGIQFQFIPPRTPHFGGIWEAAVKSLKNHLRR
TVGNANLTAEQMSTFLAQAEACLNSRPLTPISNNPDDLDGHFLVHRPLIAIPEPSYEEIATNRLSQWQMIQEYLRRLWKR
WSTEYLSGLQQRTRWTRERDNIRIGTMVLVKEDNLPPQKWRIGRVIEIFPGNDGHVRVVKLRTPDGVYTRAITRLCVLPI
DDNQQPAQDSQ
>BEL-33_CQ#LTR/Pao 232-3449 via tfasty with BEL-55_CQ (=gag?), 1 frameshift. [Culex quinquefasciatus]
MFRRSPAALPDHVLEVSPTLPDPILEVFSALSDRVPEANHLLPNTVSEASLALPDPVPEVLPSLSDRVPKSSHVLSNTTS
EASLALPGPVPGVLPPMSDRVPKSSHVLPNTTSEASLTLPGPVPGVLPPVSESAPEANHVLLNTASDASLALPGPVPGAR
PALTDRVSEALQNLDELAATVDRPENVPPSTPAVSSSTPESELLTTKCSDRAAGTVQTAADFSTWTSAPQREVAMNPTAK
KLADAFRQRHQAEQKLIFVEELLLGMCQPTLAQLTVLYDFLCTAYREQSQHHLTIVGIIPDEDLAQQEAEFEKHDANFYK
VATVVAELQIEAERTEPVSTSAAAKSAVNRQRLQAESWLKQMLRAWESNRVDPLDSNVQLQAPGSQEVVLRDCAPTVCIP
KPEPSLNQLKSLAKQIATKSTCELASDSRIILRSEQPSAVDSRPREDFNMNPIADKFDFLEPTGYLKNVTAEAEPGPVMP
AIPSVQVSLRYRSITHPDPRRVHSEEPKNLPDFELQQNCTEPVGSFKKDFETVMTVPKYQLQLPSAAKAPDKRRHICPSR
VTTNSDSKSDAPNEVESRETSAVSSKLDPADRRVSIRVSRDVATRVSLKLSLSAMAACSDNQQSEHSNRHRGTKSDVANE
TRSQRLEIRLPTVPANRAFAEVPEDVANSENSERDEESPKSRQRASSCEVHADSIPEQTPEAVILDRTVALDPDINRFHS
DRDLTNPEDKADFSRVTKDSSSKVTKMIPRSRVPGVHNSVKNTHRVHLDIVPETSFRMVKTVAEKNPLMPPVSNAPEKLK
QYRTMKKTQPRAFGVPPTRCQPRQVCQECAKPQNQTKEVTNQEINHYKDSDPVTDDCALQVPNRINGRVTRRDSVTTTPT
GINPIKPGGRCRIVHSETASYNPFRALQRQETISVSKKQGVVDAPDRTDDLALNGGAERTTPRKIWHAVAVLQLLQEPRD
TFQNKDKKPATQSKPNDSLYDEKIAQNWLIDRELIATKMLNTSYLYRAEANLTPDERETLRPLEEARPTFTILKRPWDPG
STCHTSKPISDPDQTAVQERRFRNAVERTQRGE
>BEL-28_CQ#LTR/Pao 42-1688 Fragment [Culex quinquefasciatus]
MDKLEHLRKVCLVRVSGELVAAGKLAVRKASFSEATERLERLRELAGKFRRMQQSIEETLEDQEEVAAAHGKSVEFFTAY
QAAEELLEVHIKNTTPVRAVTRKSSSGSLLDEIRQFCEKVTAATVGQFGTIPSYPNGSAQVSSCAPHSGPTTTSDGQSGA
VGYGNPDGKQRLDCASVTDPTTVSSREEGEPMSNWSPLPEKHHSSIRVSTFHPGQATCDGGKDGPETPMEGVEKASVEKA
TTQETNKPEEVDGAAINMAVTQETRRVKWKALMPTEAISVRGIDVALPQASLDSKTCAELCPFHGIEEEQLPAIGMSTIS
PVRLSCNGGKGGPETSATGVEMALAGGEASQNQVVRPAAEQVEEVIINVVEAQDPRGAQRKAHLLPTEPVSCRGIDLALP
RASLDSRFCVWIGLPSIQSINTSSVRAVGPDVKIQKAKHNINDERFMEMEGDQALVDTDSTESTRRFEDVGGYVTRSRFR
DATFSFKQLWIRGHIRHLLKVERIGNWTHHQTASAGEGKGLRLKIKHTTEKIVAAGGVGLRQMCLKAGE
>BEL-14_DP#LTR/Pao 389-5616 via tfasty with BEL-1_DBp, 4 frameshifts and 3 stopcodons. [Drosophila persimilis]
MTSEQNRVSFLKLKSTELCEKMKRLATAWQNESLDCDYYMLVVKQEQIEKLIGKFETFHGELEELDRSEIHSGLCDIFES
SSLKAAIMREMAKSSGRMPFHSTLAGGNTTVDFAGSQFLPHRRQVPSLPPIQLPTFSGAYANWTDFYSMFATIIDSHPDL
KNIEKLQHLRSCLRDSALETVRSLEISDGNYAVALDLLENRFNNRRLVFQAHINEILALQAVEPGSVVMLRELSDKFNSH
MRALQGLGTTEQIAGCIIVQELLRKLDPASQEKWEERFNEPALPTxFRRQRCRSWETMDFSMASYALSNQVGRSRKHNNS
RSTLVTTNQTVARCALCNDGVHEVQHCQKFKALSPTNRHKEAKRLSLCINCLRTGHRLLQCTSSNCRTCGGRHHTLLHFG
SPEDTAVQGKSAPYTPSxSPESTPSEHTTEPSTSAATSSALIAQDLSNGVVLLATATVLVKNRSGVLVPCRALLDSGSQL
HLITSRFANxLQLRKMKSSTAVSGIGDSRFVTDGFSVNVSLHSRSSDYSTLITAIVASSITDRQPSFGIDTQNWNIPSNI
PLADPEFYKPQRVDLLIGASLFFELLCVCQVKLLPGLPSIQKTRLGWVVSGSCSRLKGSSLMVSRARAVATEDNSPEDRL
EVLLRRFWEVENCIEPIIKSTKEELDCEAHFVQHFRRLHKGDYCVRLPAKYNLDLHGESYNQALRRFLTLERKLDRRPDV
KSQYAAFIKEYLDLGHMSQVPTQSISNCRYFLPHHCVIKEDSSTTKLRVVFDGSASTSSGYSLNDVLMAGPVIQPKRFHI
LARFRSYAVAITGDICKMYRCVRVSTEDSNLQCILWRNSREEDLRVFQLDTVTYGTKPASYLSVRAMHQLAIDEQMAFPV
GAVIHRRDFYVDDLISGASSQEEAIRIREQTTGILSRGQFRLRKWCSNVPAVLDGVPEEDKETFLKFDDGSHVTKSLGLA
WDPVSDLLLFSFSALQSSLNSCRRSVLSSIARFYDPLGLAGPVITKSKIFLQRLCQEKLSWDESLPVALNTEWQEICTSF
GQIRRLEFPRLVLLPDSTLEIHGFFDASIEAYGACIYVVSKGQHFSSHLLCAKSRVAPLKTLTVPKLELCGAELLARLIS
EIAGMNVFKGRCYCWCDSAVALSWIRDEPSRFNIFVANRVSTIQEMTEKMEWRYVPTALNPADILSRGAHPTDLNESPLW
AHGPSFLCGSSDDWPPTVLPDKPALELRRKALLVKSPYMDMDIIADSKYANSFASLQRVFGYIHKFCNRIRRPGLTVSDI
EHGTQVLLRLVQRTQLWEDMKSLRARGAVSSSSSTASLSPFMDQLGLLRVDGRLKNSSLDFHGRHPIILPSSHPLTLAII
SHFHERNLHAGPRALLGLIRSQYWPIGGRKTVNKAVNKCVRCFRLKPRVLEHIMADLPKERLDGSHAFEITGVDFCGPFF
YKPEARNKAPIKCYVCVFIFFPTKAIHLELIKDLSTVAFLHGLKRFICTRRKPRKIWSDNVTNFVGAKNELMELKRLVLS
DDHQKALLDFCLVEVIDWHFIPPRSPHFGGLWEAAVKTAKYHFYRAIGNSVLGFDELRTLLCHITAVINSRPLVSISESP
ADLDVLTPAHFLNGGPPASFAEPDVTLLNFDRLDGWQRVSYLQQLFWSRWKEEYITSLQQRSKWPTAKPSLAVADLVLVK
DENLPPMKWPLARVVELLPGRDGVSRVAVLKTSPGITKRAVNKLCLLPLKDAVESQASNGGS
>BEL-13_DWil#LTR/Pao 65-5293  [Drosophila willistoni]
MEKLKATRTKLKSSLTRLLTLSENPPENCTADVVDTMMTRLDNVWKEFDRSTDDMFEFQESQGYVDPMGDYGDYEMKYLT
AQLHLKELGKLVNPVKATKVVDSSEGVNEVVSQILHKQMELQREFYESMTVSGAACSALGGQVQLPKLHIKPFGGDYLEW
PAFKDLYESTIHNRVNLDKAQKFQYLKSFLCDEAASLINHLPLTGAAYETAWAGLMERYDRPRHVVNSLLDNFRRLPSTR
VTDVSVLRKIADGASEVVRGLDALGQTNRDCWVIYFLLDKIDAESQCKWVSYSREGTSPTIKDFLRFLGERCDEFELSRC
EQVAQSNVKKYTRILISTDSRGCLKCESKEHNVYNCDQFLALSVERRYSFAKEKRLCFSCLRPDHGISRCESKYRCKHCQ
DKHHTLLHRQVEEKSINPTAAMIAETKQVKEVQSIESQSYLARSAVNQQPRGKPRSVLPTALVLALNSKGSYTTCRVLFD
SGSELSYISEHCMRSLGLLRSPSRILVSGISSIKADTTRGVSAVHLKSRFSKHTLDITAHVLGKITTLLPKDEVDPAVLK
VFDGLELADLPETSAKHVDILLGSDYVWSAFTGEKVLDKHGNIIAISTIFGWVVTSIAAKQGSNTASLLSTIEINTSLQR
FWELEELSGSLPPTADDLKVENHFRSTHFRDSNGRYSVELPFKNSDVKFADTLQGATSRFYSVERRLQKDKRLKEEYTKF
MREYIALGHMRILDESEKTSAPKEHMFYMPHHPVIGTKLRIVFDGSYKDKSGRSLNDELLVGPSIQRNLMDVCLRFRLYK
FVFCADIIKTFRQIWISENHRNYQRIVWRENPTEELQHYQLCTVTYGTACAPFLAVRVLEQLAIDLKHKYPTAAKILLED
FYVDDVLTGANTEDQLIRNKDELIQLLGRAQLELGKWVSNTHGIGPLEEAAATSVTGDASSVKVLGIHWEPKSDIFTYGI
RLSECTESSKRQVLSDVSRIFDPLGLLAPVIVQFKILFQELWLLNLDWDSPLPTKLADRWRKYREDINNIRQLKIRRHIG
YVGKRIELHAFSDASIKAYAAVVYSRIVNQDGSIEVSLIAAKTRVAPLKQQSLPRLELCGALLLSRLIASIKLAWKDLES
TVYAWCDSTIVLAWLNHLPASLKTFIGNRTAEILEVIPRDSWRHVNTKQNPADCASRGMLAEDLLPFTLWWKGPDWLAET
HLNLGNEDDIQISNLISDDEYRKELKATVLVTLAETMNESSPLEELIGRVSSWPRLVRIVAYILRFIRHMKNPQEKSDTF
AVTCDEYKAARNLCLQQAQDERHKERKALRNEGCVPKGSKLCTLTPILDDSGLLRVGGRLNNSELSYSAKHPLILPRKHR
ISHLILEHEHQHNLHPGVSALFVIVRQRFWIMGARNLIRKVTHNCIKCFRQRAYTSNQLMAALPAVRVRQAFPFENTGCD
YAGPIMMKTHKGRTARKEKGYICLFVCMATSALHLELATDLSTDTFLAALRRFISRRGKCVTMFSDNGRNFVGAKRSLNE
MEQLVQSQLHNNKIAEALSIEGINWKFIPPHAPHWGGKWESAVRSVKLHLHRVIGHAVLTFEQMHTLLTQVEAVINSRPL
CATSDTDVGYLSPAHMLIGRPYTTVPDGDLDQVPANRLDYWQQSQAMLQGFWKRWHLEYLTSLQQRPKWLMKSANPKPDD
LVLVKDSHTPPASWILARIIETIPGPDGLVRALKLKTATGEMTRPITKVAPLPVSETLFQGPA
>BEL-13_CQ#LTR/Pao 28-6213  [Culex quinquefasciatus]
MDCMLCNFPNTDRMVSCCVCGSWMHYECVGVNDSIAAHSRSFYCPPCQRPTPRPQPPVEEPGKKHDGKAKSSKAGSKAGS
KAGSKASSVQSGVGARTRLAQLKIQKLEEQKKLALQRLELESKQRDAEMAAKKQVQEAELAALKLQVETEALEETFRLLE
ELEIGDDDDDGRSVASEQSSRSKVTRWQQNQEVMSSTLMRPTKTSAGTGQRAGNPTTSGTVAGQVGQPAGGNRTVLDRAL
DGISLNDTVAQSTLGGFIGRVSETVVSKHATQKPFAPGTHNAESSPSPIKSSPTPANGKPQTPTSLIQSLLSRQPVLNSE
VSAGSGQGNGQQMNPGGQSQTQSGPQQSAGGTTQTHTGTGGGQTTGRRPQSFTKLPGFQEPPRADANQVDRNEDTPDYYG
PTPQQLAARQVISKELPVFTGNPEDWPLFISAYVNTTNACGFSDAENLARLQKYVRGYAYERVQGRLLHPAGVPHAMATL
EMLFGRPEMLIHSLLQKVHDAPAPKPDRLETYIDFGLAVQLLCDHLEAGGHEAHLNNPMLLFELVEKLPANAKLDWSLYK
ERCSQVNLTTFACYMSALVKAASDVTLSYGSKQQQQQARVAKLDKSSKDKNFCGAHSSEDVSRTPVKEVTEKKAAPACFV
CKDPKHRVKDCAEFGKKTLEERRRIVDEYRLCGNCLGVHGKKPCRSSDKCDIDGCQQQHHALLHYKQKSGGTESKRAEQK
REKNEPKVSGANAITNHHYAGKTALFRIIPVELHGNNRTVSAFAFLDDGSSRTMVDEEIAKELGVEGEVLPLCLQWTANV
KRTESESQRIALEISGSEDEARFALNDVRTVKKLDLPRQSLRYAELAKTFPHLQGLPVKDYADAAPRILIGNDNAHVTAM
LKVREGQPGEPIAARSRLGWTVYGKQDHTAGRVHSFHVCECQDDQSLHDLVKEFFSVESLGVEATAGPESDEVQRANKIL
QETTKRVGQRFETGLLWKYDCFEFPDSYPMAKRRLQCLERRIQKDPVIGESVVRQLSEYQEKGYIHKATPAELEEADPRR
TWYLPLGVALNPKKPSKVRIFCDAAAKVDGVSLNTMLLKGPDLLKTLLHVLFGFREKRVALCADIKEMFHQVKIRKEDRH
AQRLLWRDDSTKEPEVYLMDVATFGATCSPCSTQFVKNRNAEEHSHDYPEAAEAIIRKHYVDDYLDSADSVEEATKLALE
VKHVHSLGGFDLRNWLSNSKEVLARVGENDPALEKCMQLDKNDPMERVLGMYWKPDEDVFTFTMTLTFDADLPTKRQALR
IVMSLFDPAGLLCFFIIHGKILIQEVWRAKTEWDQKIPDKLKERWMRWIAMFKHLSEVRIPRCYFSKYSIADIVSLQLHV
FCDASEEAYSCVAYFRAVYFDGTIQVALIGGKAKVAPLKALSIPRLELNGAVIGVRLRKSITNGHSLKIDKTVMWTDSRT
VLAWINSDHRNYRQFVACRVGEILSKSDAAEWRHCPGKLNPADLATKWGPRGPSFSPDYPWYGRFFILSQEIEWPMDVNP
TEETTEEELRACLVHSEAVTKLTIDWQRFSDWTRLLRAVAYALRYKQNFVENYRKQPLTKGLLTQEELLVAETTIFRTVQ
SEAYPDEVATLSVARGKRTPRRQVELERTSLIRKLSPFMDEAGVIRSDSRISEATFASHDTRFPIILPKGHQVTNVLLFW
YHRKFLHSNGETVVNEVRQRFFVSMLRTEVRKIPKKCPLCKLKRAMEGKTLAIPRMAPLPAARLQAFERPFSCTGIDYFG
PIAVRVNRSTPKRWIALFTCLTTRAVHLEVVHTLTTESCKQAIRRFIGRRGAPAEIRTDRGTNFVGANNELRLEMNKLDG
QLAETFTNTNTRWVFNPPAAPHMGGAWERLVRSVKTALAAMYTSRVPNEETLATLLVEAESIVNSRPLTFIPLQSEQQEA
LTPNHFLLLSSRGVVQPPKTSIEPRLACRGDWQLCQAMLDQFWRRWIREYLPTIARRTKWLEEAMPIEVGDLVIVVEEKI
RNGWIRGRVVEVCPGRDGRVRDAVVQTADGFLRRPVAKLARLDLNGCKTEPEVSDQLNGSG
>BEL-14_AA#LTR/Pao 46-5430  [Aedes aegypti]
MEELIVKRNSLFQKVKWELETAKKVLARNPPICEVRERVDRLHRLGDAFFAVQGEIEDCTTDLEAIASVFNYRAEFEERY
YQAKAMYIQMDDGSVLGDDMKDESGSTLQNAVVALLEAQRVLMSNQAVVSTQTNALTAQLEDARLQPPGSRVPVAEPNLD
QLLNVRLPPINIPTFNGNRKEWRSFKDLFASTIHNKQTLRDSQKLQYLLSYLEGEAKSLVSSFAITDANYMQVWNKLLER
YDQNKYTVFSLVKEFLEQPVVSSANPSSLRKLVSTSDEVIRQLSAMGAQYETRDPWLIHLLLEKLDKESRSQWAAKLVDL
QDPTFQQFLKFLENRCDALETCSSFTRTSTTITEAMKRETRKDQARPMEKRLQSFYVESQQCPKCSSEHQIYQCESFKAS
SVADRRELVQKSRLCFNCLRPSHCVKNCSSKTSCKNSGCNQRHHTLLCQQGDSQAANPVQKPIIQSACSSPASELPEQEV
HSTDELSTFKTDVSSELPTKVAVLPTALIKIRDKDGSFQLARAMIDSCSGASLISEACMTRLGLSRSNARFPVTGVAGSA
AGTTKGVVKLEISSRFNDEVILTTEAYVLDVLTAPIPSQTIDVKRMKFLEAIQLADPVFWKTGKIDVILGVELFLPMLRI
GQVTDDNGLPIAQNSVLGWLVAGRFEGGTGIQALCASLNVDSNVNIDKSLRMFWETEEIPSQNVLTADETRAVEIFKTTY
HRDETGRFVVRLPFDETKPVLGESLNTAIKRLRAMERQFLLNPTLKQQYEDFMMEYLRLGHMELVPESEIAKPPNECFYL
PHHAVHKADSLTTKLRVVFDGSCSSSSGVSLNDRLLVGPNNTENLLDVLCRFRTYPIVFVSDIEKMYRQVRVSEDQADFL
RVVYRKNPEEPVQHYRLLTVTYGTSCAAYLATESLRQAARDSATKYPVAADRILKGFYVDDLMSGANTVDEARTLVNEIS
TILNGAGFALRKWSSNVPELIEDITDSQQGPIPIQFTSELDSVKALGIRWSPREDSFDFNVSLDVTSRNTKRQLLSDASR
LFDPFGWLSPCIVKIKILFQQLWLHDLTWDDPLPSAIEEEWVSIKNNLQALEQLRIPRWVANHKGGMQLIGFSDASESAY
AAVVYGRSVDSNGKVHITLIAAKTKVAPIQQVTLPRLELNAAVLLTALVKKISSALNHLKLEVNAWTDSTVVLEWLSSHP
RKWKTYVANRTATILEVLPRSSWHHIPSIENPADCASRGVTPHELLEHPLWWTGPPWLHNETEFLEHLTTDVSNTSQQVS
IIHTEVSQKNVIRSSSSFTIEQYLLHRYSSIRFVSRILAVITRFIDNLKAARIKHNRKTGPITPAELQASTLWMVRCAQH
DMFAKELECLWSGTLLPRKSKLRPLHPFIDAEGTLRVGGRLQNADLPYEMKHPAILPGNHRCTTLIIHDAHLSNLHAGPT
LLVATLNQRYWILRCHTAVRQVTQNCLQCCRMRAKTATQLMGSLPAVRTMPVRAFVHVGVDYAGPITVKSGNPRKPLLTK
GYIVVFVCLSTKAIHLEAASNLSTATFIEALKRFIARRGLCTEIWSDNGTNFVGADRQMQDFFQSTEFETQANRFSSNVG
IKWTFIPPSAPHMGGLWEAAVKSAKLHLYKVLSRGPHTYEDLCTILAQIEACLNSRPLCAISNSPDDYNVLTPGHFIIGQ
PMNLLPESSVPSVPINRLDSWKMRQKQVEEIWQRWRNEYVSSLQPRTKWQNTKDNLQVNRLVLVQNESTPPAHWELARVV
AVHPDRHGMVRIVTLRRGSSEYQRPIQRLVPLPSA
>BEL-14_DAn#LTR/Pao 1135-6297  [Drosophila ananassae]
MESTKQKLNSTTLIDLKKRLNVKVKSIRRLEERLEDGSLPLNKTELECRLQVLDEAISKANELQDQIEQIDEMDDFGAEL
EELGITTKARIMSLCNALNSAEDSRSATAISAAPTRARLPSLALPKFSGNYSDFKNFISLFETLVDKDVNIPVIEKFNHL
ISCLSGEALGTVKAFQVTESNYAKAIASLKRVYDNECLIFANQIRQLFSLPKISQPSASSLRGLIDTVSSIYGSLLSIGD
DTKIANSMIIHLVLSRVDPVTKQKWEESLDYEELPLWSDFEKILNRRYQHLSAEETGKPKQERTGFGKQLNRTSLACSST
NAKPACSYCNANNHFLAQCSPFARLAVMQRFEFVKSASLCLNCLRKGHTVANCKSTRCQICSRSHHKLLHRFTVTENSLA
LPPPTQNPPPELTNDGPSTSHALHASSVERVLLATSIVSVRTKNGEHILARALLDSGSQMNFITEDLAQRLQIRREESCI
NLLGIGQTNSQVKKKIHTVVKSRVNGSEFPFDFWVLKTISGYHPDQSVNVKDWTLPKNLPLADPYFYKPQRIDMLIGAES
FFELLSVGQIKQGPNHPILQKTLLGWIVSGKYLANSSTPPQPVSSLNCQEEVLESIDKNLKKFWSLEEVPSSKKMLSPEQ
ELCEEHYRKTTRILPSGRFEVKLPFKSDPSVLGNSFEIAKRRFLSLERRLSRDPNLKKMYLEFMEEYESLGHMSPASNDV
LASPHYVIPHQCVLRPQSTTTKLRVVFDASCKTSTQKCLNELLMVGPTIQEELYSTLLRFRLNKFALVADIKKMYRQVMV
NEADRRYQLIVWRKDPSESLKLCKLNTVTYGTAPAPFLAIRCLKRLSESAKNTFPRAAKVIGSDFYVDDMLTGAGCVEEL
KTIKSEVTQVLQNAGFELSKWFSNSPEVTASESTVKPITLSDSELTKTLGIVWVPKDDVFKFEIDMSVMGQRATKRNILS
VTSKLFDPLGLLSPILIKGKILLQELWLNKLDWDESIPLHLETAWNKIQLALSQLEEISIPRFVMSEPMSPIEIHAFSDA
SMRAYGACVYIRCKSAEGSKVSLLTAKSKVAPLKTKTLPRLELCAAHLLADLCRKIKPLIKAPIERSVYWSDSEVCLHWI
RSHPSSLSTFVSNRVAEIQEWSEDSTWRHVPTKQNPADIVSRGGDVKETIESIWFTGPSFLTEPEDKWPTSPRFDPSPEI
LQMEAKKSAVGLTAMVSTSYLLEVIEGFSSHLKLLRVFVYMVRFIKKCKKLVVPSDNVPSPVEYRDAFNKIVQIVQEHEY
QEEIKNVRKNLVVSPSLQKLSPFVHETSQAGLTFSLLRVGGRLANAPISYDAKFPVLLTKRSQFVQSYVRYLHESNFHVG
PRALVSLLRQRVWIVNAQEVCSQIVRSCIRCFKCKPHLMTQIMGDLPLDRVRALRPFSICGVDFCGPIETTLKIRGRPPY
KSYIALFVCFSSKAVHLEVVSDLSTDSFLLAFQRFVGRRGCPQTVHCDNATNFVGASRHFAALRHQIESEADELRQYASK
KGCVFAFIPPRAPHMGGLWEAGVKSAKNLLLRAVGSAKLTAEELQTVLVGVEAVLNSRPLGALSQDPSDGEALTPGHLLT
GGPLIAPPAPRTPDQQGLTCLRRWRLVSSIKQMFWQRWSREYVLGLQARSQWQREQEDARKGDLVLVAEDDQPPQQWITA
RVVETHAGADGRVRVADVRTSRGALFRRAVHKLARLPIVEA
>BEL-14_Adi#LTR/Pao 49-6397 via tfasty with BEL1_Cis, 2 frameshifts and 4 stopcodons. [Acropora digitifera]
MSTHSCPVAGKGARLKLYSRRRNEEDDRAEKAEQLKRSKAGLSGALKKLRGKIWPLLTERERNLTPVASVDLAEKLASYD
EIWRKFVNAHKCFMEMVEIEPEKRKAQVMYDEELARKMELDGAVKRLCRLSGSESVFSLRSVRQLEIESGRKGAGTVSTA
RKSSHVSGSGSIEARREQMALAKLNVEHLKRKQELERKLTELNHARELMEAEMEAERAYVSFSVLDQENGAGKVKGTSPI
VKSEKEPTALELIGHEENIVEQTDVKLEVKCPTRNASPEPASSGPILKFPIAKFCEQPVACPQENIIALSEIKRECELPP
PTQSIQRQDRSEQVQTPANLDTGARIVKTLCHVMNTPKIEYMHFDGDPINYVSFMRNFETCLEDDADNSRNLQFLIQHCT
GKARDAIESCVNLPVSEGYESAKKTLEENFGLPHVIAKAHVKKLENLPPLKVSTGSTLLEFARHLEIAERTLRGMGPEFV
SDLNHTNTLMELNRKLPYFIRGKWAECASRIIESGRRPKFTDFLKFVKDRAKLVNNEFGEDLVLSSSREKKRVNERWGRS
IPKLNAFTTKAEPGRIGNQDGSKKSFGPSRKCPACSGQHGLWKCEKFKRLPYGDREKMALSKRLCFKCLNGGHFKDRCPK
ETFKCQVQGCVEDHNTLLHPDPNEQVERxCATNISFHGFPRNSRDSHQxDSTPTSQSSETQRISQEQHSASGASMTAATG
AGERRICLGVLPVKIKAKGGTRIVETYALLDSGSEVTLCKEQLFSELGTRGSKRSYELQGVTGSRKVEGHVVDVVVMSVD
GKVSEELLSVRSVEQIPVAVSCIPQKEDISNWSHLRDINLQQLSQSDVGLIIGLKEKPTLFIPLECRSGGGGEPVAVRYS
LGWTVMGPMSGVRDSEHCSVNLVGLGNKEFYIDEPVEEFEVQHLDGGDDVDKQRETNEARELRASEALDETSPCEDLLTK
REIEDEILREQLEKLWKTDFRDSVVSSSTSPSIEDKKALEKMERSLKIVDGHYQVALPWRTDPPYLPNNRSMVERRAALL
RKRLLRDQDLFSKYNTTMNEYIEQGHAVRVPTDELRPIDRPLWYLPHHPVMHPLKPEKVRVVFDCAAQFAQTSLNKQLLQ
GPDLTNRIVGVLSRFRQEAVGLTADIQSMFHQVRVEPKDCDALRFLWWPGGDLSSEPVEYRMVKHIFEATSSPSVVNFCL
KKTAMMEVQQNSEVANVIDRNMYVDDLIKSTETAADAISLANKVREQLNKGGFHLTKWCSNDRSVIAAIPESERAKTVVN
LELEQLPTQSALGMKWNIEDDKFVWEISEKLMSAKSKTPVTRQGIVSVVYSLYDPLGFIAPYIMKAKLILQMLSRKKIGW
DEPLEENDNVQWTRWLDDLGKLKEVTVDRCFKPKGFTQVQEIQLHLFSDASxQSYSAAAYFRLKDVDGRVHCSFVMGKAR
LAPIREISIPRLELTAAVISVKLSHVIRDELDLTVNKVIYWTDSTSVLKCIKNETKRFHTFESNRLTIIHDGSTPQQWRY
VNREDNPADDGSKGLKLDVLTKNDRWLTGPKFLWEEEECWPAMVEIPILKDDDPEVRKEHQIYVASARRDVMEELMTYYS
SWWKLKVAVLWLLRYSAYLKNKILQRRGSSLNKQGLEERSGHLTLDELREAENEIVRCVQRKEFPEVIALQSEENQRLVK
RLIKKMGASLSKLNPQVHDGLLRVGGCIGQAPFCYDLKHPVILPYKHHITDLIIKDHHLKVGHMGQESVLSSLRQKYWIL
KGRSAVRRVLSKCFDCQKRKAKPAEQFMAELPKDRVTPSEPPFTYVGIDCFGPIEVKQGRSLVKRYGCLFTCLTVRAVHI
EILHSASADSMINAMRRFISIRAAPTEIxSDNGTNFTGADKELRNAVQQWNHQRINNFCAQREIKWTFNPPDASHMGGVW
ERMIQTAKRVLKALLKEQVVTDEVLSTVMAEVLTIVNSRPLTRNSDSVSDDEPISPNQLLHLRPTPSLPPGVFVKGDLYC
KRAWKQAQYLTGVFWRRWSNEYLPTLMERRKWRKPKENIKSGDLVLLADKNYPWGEWPIARVVETVVGRDGFVRAVRVRT
TSTVATHVNRQRRGELKASSVVLTRPITSLCPLEMDV
>BEL-50_CQ#LTR/Pao 464-5908  [Culex quinquefasciatus]
MWRSFLGLNTEPKVEPEEGEESEQEASVQKKPEPEDRKPVVVQLPLTPKQRHTESKRKMADEEVQALLNRRGHVKGKLTR
VRTVLGQPGIPAARIVVCKANAEKYYGEYNSLNNNIMDARLSEEQRTENAERFLDFEQLYDEVLEKIVELTAPPNRAQAV
VPAGQAGQQVIVQQTPLRAPIPTFDGQYENWPKFKSMFLELMKNSPDSDAIKLHYLDKSLVGAATGMIDTKTLQDNNYAH
AWEILEDRYENRRLIIDIHINGILQLKRMAKKSSKELRELYEECSRHVENLRYHKQELLGVSELFVVNILSSCLDRETRE
QWEATVKKGELPKYAQTIEFLKQRCAILERCELAAPASYAVRSAVPKAVQSSKPSAKITSAAATSNEAECDLCDGSHANY
KCGSFRGMSVAERWSKVRDARLCYNCLRKGHRVGQCPSDRSCKCGEKHHSLLHQEKNQQQTKPKPEAAPVSAKAPSAVSS
ASVKAGPSDTGAPEVNDDNEQQATSCFSSGALKSPQQVLLQTAIINVADKAGRFHPCRTLLDSGSQAHILSEAMARTLGL
TFEKCNVTVVGANAVKTQAKKGVNLTFSSRYCEFQDNISCLISDKPTGRIPSARIETAAWHIPSDVFLADPKFSEPHEID
LVMASNYVWDLLRTDRVKLANGTVTLRETDLGWIVTGVYDPFQQLSCQVVHSNITLKDQLNNAIEKFWLVEELADKQLQT
NEEQEVEEHFRGTHGRDGSGRFVVQLPFKDEVLELGDNRVQALRRFNLLERRLSRNPELREQYTAFVEEYEALGHCKEIS
EHQDSPEVRKYYLPHHAVLKPSSSSTKLRVVFDASAKAGKYSLNDVLKVGPTVQNDLFSIVLRFRRHPVAFTADVVKMYR
QVRVHPSDTPYQRIFWRKDPNERLRVLELNTVTYGTASAPFLATRCLVEQAESAKGRFPAAAKIVIEDMYVDDMLSGASN
EKEAVKLVLEVKKILEEGGFPVKKWCSNSEQVLKCVPEEDREKPKPIEEYSANEAIKALGVLWDPREDEFRFVNCLEECD
DKPVSKAKVFSDILKVFDPLGFVAPVIVLAKVFMQKLWASKMDWATELNEELLCEWFEIRESLTALNDIRVPRCVVVPNT
VLHELHGFADASTVAYGANVYLRCIRGNGSAEANLLCAKSRVAPLKKLSVPNLELCAALLLARLVVKVIETLDLKLSAIK
LYSDSQIVLAWLKKDPNLLETFVRNRVIQIFNLTGKFRWNYVRSADNPADIVSRGMSPKLLSRCPKWWKSLLPLTSAAYV
PEEPPELEDDELPGLVAIVYKVTVVEEMPVFKRFGEFRKLQRVICYVRRFVQNCRNKKSGQPKTTCAYVTVPETRAALKS
IIWSIQMTVLPDEFYLAKTEQTSSQLASLAPIVDEDGLLRVGGRLEHSSLPYEAKHPVILPRHHVTTLLIRALHVENLHV
GPSGLLAIVRQQYWPLKARNVVRDVTRKCLQCFKANPRRIEQFMGQLPAERVNVAAPFEYTGVDYAGPVTVKQGKYRPKL
TKAYIAVFVCLVTKNIHLELVSDLTTEAFLAALDRFVNRRGMVRKIFSDNATNFVGASRSLREMHELFKQDLLKRGIQDL
LVPKAIEWSFIPPRAPNFGGLWEAGVKSVKTHLKRTLQNAVLTFEEFATILTHVEAVLNSRPLFSLSDSPGDPLPITPAH
LQLGRPLRPVAKPSRSGVADNRLNRWEYLDKLREDFWGRWSREYLTSLQSRAKWTKKSHNLQPGMLVLLVEDNLPSQTWK
VGIIVETYPGMDALVRVVDVKTGSGAVFKRSVSKLAPLPTVDNDRLLERFGASD
>BEL-194_AA#LTR/Pao 370-6888 via tfasty with BEL-591_AA, 3 frameshifts and 4 stopcodons (all before pos 930). [Aedes aegypti]
MESIPPQNIPEMISDQTPLHAHTLDEQRSDCVQCDRLNGEENMVQCDSCQTWWHFSCAGVTDSKRDRSWSCxKCQVDDPG
STARTSSGFQNFSRSGSRDSRTSARINLQLSKLHxLQDFExKFVEQKRKLLDSQLELEEENESTRSKRSRDRQQTAAPGR
GGDQKGPPRRSYTSAACPLQTLPIRxAGIAGNHAPTQTQQPFNWNQPNLLKHPALIDQRSTLSIRCSSCDRFDNIFEPGT
EDATKRGVFNNVAGNVPLAQSTPAQLPTIDRQFQPVVGLLPQPFPPGTTAVPNSTSVPYTASVGVEYASTNILTAAPYPI
STVMQSTSSLPFSTAVHRLPQIPENSSTDPTSSGAARVHVPAPPPSSITQRPPVVAHPFVSHHQHDNMVQSLFSVPIPSV
VQGASTLPADPVAYRQPTYPMFPPMYQSATAAASSPSFGLVSAAPPAISSSSTSARSLVPPPNPSAPHAVPSREVLFPQP
PGKPDNYPLQTNTPPNSNGDNLQHLMRQFGSIALSPSQSPLLNTNLATFAPSPSQLAARQVMPRDLPPFSGNPADWPVFI
SSFMNTTLACGYSSAENLCRLQRSLKGAAYEAVQSRLLLPESVPHIMETLHMLYGRPELLISALLDKVRTAPSPKIEKFQ
TIIDFGMSIQSLCDHLEVAGQTAHLSNPSLLAELVAKLPPHLQMEWGSYLQGFSEVNLKTFGLFMSSVVKAVSKVTVFSS
SSGRTNAVDKINSKSRGSINAHHSETNTNDEFNTPTNREEAKECPVCKNAGHRIQDCRTFKSLSVDGRWKCVQSNGLCRN
CLNSHGRRSCRKISSCGTNGCEFRHHPLLHSTRSSTDTQMQPLVNTAENHTHRQVEQSLFFRVLPVTLHGPKGTVETFAF
LDDGSSLTLIEDSLVKELGVEGVTMPLCLLWTANMTRTEKGSQQISLAVSSAGGKKYSLQEVQTVRELSLPVQTLSYEHL
SEEFKHLRGLPVRSYTKAIPRLLIGINNLDLMVPMKVREGLRREPVAAKTRLGWCIYGGKSNGSQQPSVNYHACGCSSDQ
TLHDLVKQFFATEEIAVQSTTPLVSEAEKRAQQILEDTTFRVGNRFETGLLWKFDHVELPDNYNMALRRLECLEKRMNRN
PELRQTLQRQLEEYQLKGYAHRATEDELASADMRRVWYLPLGAVVNPRKPGKVRMIWDARAAVNGISLNSVLLKGPDQLT
SLPGVLMRFRQFKVAVSSDIREMFHQIYIRKEDRHSQRFLWRDTPTDKPEVYIMDVATFGSTCSPASAQYIKNKNAKEFQ
EMYPRAAEGIVKNHYVDDSLESYESEEEAIKTSQEMRFIHEQGGFELRNWLSNSRTTLSALGETDSREDKRFAADKQCEY
ERVLGLLWLTEEDAFGFSTEMKPEISEVAKKDECPTKRQMLKCLMSLFDPLGLLSIFVVHGKILLQEVWRSGAQWDEKVN
DELHIRWKNWTRLFEAVRILEIPRCYFPGATKERYRELQLHIFVDASESAYCAVAYFRTLNANKSPECALVAAKTKVAPL
KAQSIPRLELLAAVLGAHLSQFVEGNHALRITRKVFWSDSATVLSWLRADHRRYKQFVACRIGELLTVTDVKNWRWVPSK
QNPADIATKWGSGPDLSANSVWFNGPHFLRLSEAEWPTQRMYTPPTEEELRPCYAHKAIQIPEELVDVTRFSRLTRAVRT
AACVIRFIGNIKQKVAGQIRNSGPLTSEELQEAESLLIRQAQWQSFPDEMMVLERNRSKPLNEQIPLEKTSDIFPLCPIL
DNQGIIRVDGRIGAAPNVENEAKFPVILPRKHVLTTLLLNYYHRKFVHGNTETVVNEIRQRYYVPRLRTAVSSVARACQW
CRVYKCLPKVPRMAPLPLARMASFARPFTYTGLDFFGPLTVKIGRSTAKRWVAVFTCLTIRAVHVEVAHNLSTESCIKCI
RRFICRRGSPAEFYTDNGTNFQGAERLLKEQIEQLAVTFTGTTTKWMFIPPGTPHMGGAWERMVRSIKTAVEAAYNNNRK
LDDEALSTFMVEAESIVNSRPLTYLPLTSEESEAITPNHFLLGSSSGVRQPIVEVTEPAEALRTSWNQVQHQLDVFWRRW
IREYLPTLTKRPKWCGEEKPIAEGQLVMVVGEGRRNEWTRGRIVETIKGADGRIRQAIIQTARGLARRPVARLAVLEVDE
GVKTGPGGQCYGGE
>BEL-193_AA#LTR/Pao 720-6116  [Aedes aegypti]
MPAADLRALVKQERHAWVTLDNIQEFLRTYDDQRDKNELQFRMQRLDEVYNKYCEVRVKIEVITDDLDTVEVEGAVGAEG
VDDAPVDQAAMAEARQRENEEIFKEFENKYFRLKQQLHTKMIGNQGVIVERQAGAEVCQPSRMKYPELRLPTFTGKHSDW
INFRDNFRSLIHANNQLNMIDKFNYLRSSLKDEALLQINQIQVTAANYTLAWETLEAKYENHELIAQEHLRALFAVAPMK
TESFQGLNHLLTTFRVNLQQLEKLGERPNDWSTLLAFMLSQRLDDDTIRHWETHHSSKDIPTYQRMVEFLENHCSILQST
SARKSSDFKRPVKPPVVHAAVSPSGNCQICNGGAHSIEQCRRFGKMKVIDRKATVRRLGLCLNCLRPGHYVVDCSRSSCG
KCGQNHHHLLHPFVASVQQEQTSSQPSSQGPPKRPQSANPPPQHPNQAQNRNTSHNTPQSTQTQSTSSQNAPPTNTPTVH
ATATPFETLRQSNIALLSTAIVKLGDRYGNTVLARASLDNGSQICVMSESLSQRLNFQRLRENLPVDGVGGCSSVSKQAV
LASVSSRSSSYVSCELKFYVLPKVTSNLPQQNIDVSSWNMPERITLADPSFNESGAVDVILGNIIFYDLLLNAQRRISDS
GLILRNTRLGWIVAGGLPETSVVSYSAVASSPVTTEELYEELAKFWELESCRTKSCLSIEESTCEAIFQKTTTRDSDGKF
RVTLPKKKNMLEKLGESKAIAKKRFLAMERRLNGNPEMKALYTAFMHEYLSMGHMEEVASDDEEPGPEYYVPHHAVIKPD
STTTKLRVVFDASCSTDTGVSLNDVLMVGPVVQDDLRSILLRFRLFKYAVVGDAEKMYRMVWQHKSDQQLHKIFWRDSID
EPLRAYKLTTVTYGTASAPYLATRCLNKCAEDGAERYPSGSVVVKKSFYVDDMLAGADTVEESQQLCKEVLELLKGSGFN
LRKWNSNNPEVLKEIPLHLRDDRVKLDLDEKATVKTLGLTWEPATDTLWMKVPDWRPGGPITHRIVLSEIARLFDPYGLV
GPVIVLGKLFLQDLWRGKYSWDEPLSGELQPKWLEFRTNLRELDAISVPRWINFGKDVVSCEFHGFSDASDKAYGAAIYL
RCVNQDGQVTINLLMAKSRIAPLEDLSKRKKKQNIPRLELSAALLLAHLFESVSSSMMIAAKSFFWTDSTIVKCWISSHP
SRWQPFVANRVSEIQHATTEGIWNHVPGIENPADIISRGAAPAEIANNSLWWNGPEWLRKETHYWPKNAQVHEQQFDSVT
LEERPLVSAVLQILPPSEIFKLRSSLSNLVRPTAWLRRFSFNCKPQNRQQRRSGIITVAEHEEALLVLVKLAQSECFPLE
LSDLAATSAVRPASKLRTLNPKMIDGVLCVGGRLGNAPVSRGRRHPIVLENRHPLTKLIMIDYHHRLLHGGPQLMISCVR
ERFWPLNVRNLARQVTHECVKCFRAKPRAHEQLMGDLPFERVSPAPAFQRVGIDYCGPFELQHARRKGAPLKCYICLFVC
MVSKAVHIEVVTDLTADAFLAALRRFVARRGRPEQIFCDNATNFVGARRQLSELNRMFRQQQFQERLSTEAARNSITFNF
IPAKSPNFGGLWEAAVKSLKGHMRKVIGTRRLSQDEMQTVVIQIEACLNSRPLTPLSNDPADLQVLTPGHFLIQRPLTAI
PEPNLPDLSEGRLSRWQKVQRYSQMIWKHWSTDYLSNLQQRNKWTRQRNNLNVGTMVLLKEDNIPPLKWKLGRVMEIYPG
QDGNVRVVAVRTQDGRFQRAISKICILPIRDNQTEEDQD
>BEL-221_AA#LTR/Pao 79-6464  [Aedes aegypti]
MMPTTTRSQRICEKCKNPNDVTKMVACDRCHRWYHRTCAGVAERYIGKWSCERCVFTVTISDHSVSGKSGSTSRSSRLQL
QLLRLEEEKRAQEKLIQEQQEQDRIRLEAKAALEKKYLDEKYALLIAEAEDEEADSRRSRRSRASRNSQVQEWVDGVDEA
AGGNPVPEHIEDIFPPISVGTEMVVPRRGIVSRYTGAVPKITSNPSPNVEAVGRGNRPGPVINDNVEAEGIGSVAGINNP
ITASTPIRIGGTVQSSQPVRSMYRQSVYTQPVYTQSLFPPSTQMQSLSILPKVVPRPPLPTFLFPEPISKPKTRTRVSFP
PVSETSLPHTTGRPPVDLTVESPPSNSAQAKAPRSMVSTSSQLPPVLHSSQEPLAHSIEQQSSVQPASTLPSFNPSFQQA
HTQSHVSRSVVCDQVDDQSQPPSALRSSASYTPSPPQHHVEPEILLPQSAIHQPASSHSSPLQQNEPYATQLQQIQNQQA
MWGQFQQQLSARQVVPKELPVFSGNPEEWPLFVSSFRNSTAMCGYSQSENLMRLQRCLKGKALEAVRSNLLLPTSVPKVM
ETLEILFGSPERLVQSLLSKVRSVPTPKAERLETLVNFGLVVQNLVGHLQAANQLAHLTNPTLLQELVEKLPPHLRLDWA
LYKKSAGPVDLGTFCEYMSAITSAASDVAHFTDFEGPRAGGNEKQRKEKAFVNAHVSSEPRKFEQQQVKKVESKERPCYV
CHSVKHRIKDCNKFKSLSFGDRLKTVETHQLCAVCLVPHGKWSCKSTRICGVGDCDKKHHPSLHPGQPIGVKPTSESSGA
RPKSEAVVNVHCRIRSATVFRIIPVVLYGEKTRLSTFAFLDEGSSSTLIDREVANLLNLGGDLKPLCLTWTGNVSRHEAD
SRLVSLRISGEESSKSFSLTSVSTVSKLELPVQTLQYEELSRRYPYLAGLPVRSYENAVPTILIGLDNIRLSLPLKVREG
RLGPVAAKTKLGWTIFGSIGDSKADSSPRILHICKNEDDNRLHDLVKGYFAVENLGVSVTCGPEADEDRRAKEILQQTTV
KRADGHYETGLLWRYDVVELPSSYGMAERRLICLERKLRNHPELRASLDKQISEYLNKGYAHKATPQELEESDPXRTWYL
PLGVVTNPRKPGKVRIVWDAAAKVNGVSLNGTLLKGPDLLTSLPTVLCRFRQRQIAIAGDIREMYHQLKIRKEDQQVQRF
LYRSDPSMKPEVFVMNVATFGSTCSPCSANFVKNTNAMECKAEFPEAAAAVVENHYVDDYLDSRDTEEAMAKLASEVREV
QQSAGFELRNWRSNSKQVLQILGEVAEDTRKDFSVDKESQVERVLGMAWLPDDDVFVYAVKLPDQFGEVTKRSILRFVMS
VFDPLGLISNLLIHGKIIIQDLWRAKVGWDEAIPSDVLEDWKRWIKKLSELSQTRIPRCYFPGYNPDSLQTLELHIFVDA
SESVYACVAYFRIIDNGQPRCALIASKAKVAPIKPLSIPRLELQAAVIGSRLAKSISEYHTIAPSRRFLWSDSTNVLSWI
NSDARRYRQYVAVRIGEILEETQPEEWRWISTKINVADEATKWGKGPDCRPNSRWFAAPDFLLKPESEWPRQKAPVVNTE
EELRVVHVHHAVMLQPCIDYNRFSKWERMLRTTAYVYQFMDRYLDLGKERSMQSGGVLKQEDLVRAERALWRLAQAEEYA
EELVVLRQANQSEDRLLNLENSSPLKQLSPFLDEFGVIRMAGRTEASPLAKYDSKFPIISPKNHRVTELLIDWHHRRFGH
HNGETVVNEIRQRFHISTLRTMVRKLSKKCQWCNVYKAQPAVPKMAPLPEARVTPFVRPFSLVGVDYFGPYMIKIGRSQV
KRWVALFTCMVIRAVHVEVAASLSTESCKLAIRRFIARRGAPTQIYTDHGTNFVGASRELANQLATMNRELAETFTNTNT
RWFFIPPSSPHMGGAWERMVRSVKTAMEVINEFRAPSEEVFHTIICEAESIVNSRPLTYVPLETSDQEALTPNHFILLSS
NGVKQPEKAPTTEGEALRNGWNLCRYVLDQFWSXWIREYLPVVTRRTKWHDEVKPVKEGDVVFIVGEAIRNRWPRGKVLK
VIPGKDGRVRQVDVQTATGILRRPVAKLAVINVLPEGNPAGPEQHYVEG
>BEL-601_AA#LTR/Pao 704-6214 via tfasty with BEL-638_AA, 4 frameshifts and 2 stopcodons. [Aedes aegypti]
MFETPLTSRGGAQTEAQSNRDGENQTIEPISEQKKKQKKKFQLRRMNEELKVIKIQSNALERKLQRVHAALVVDAEVPNN
NLANKHYLQLQLKTIEDAFAEYNTNQKRIYGLDVDEDTHNEAEERYIDFEQRYGELYVIITKLLDDIAQRERPTVAPSAS
TAATSAVPAVTMHLPPLKVPLPTFDGTYENWYAFKSMFETIMDRYQSESPAIKLYHLRNSLVGKAAGIIDQEIINNNDYA
AAWATLTERFEDKRLIIDKHIDALFDLPKMCGENAADLRKLIDVCTRNVDALKNLELPVDGLGESMLINRITKKLDGETH
KAWELDQAANEMPDYETTMDFLRERCRVLEKIRPPDKRVVKPVKPGRQMVETRSKGTLVAHMIxxMQNNYYMTAAIMGSS
LVTTSDKCPQCSSNHELWKCDVFKKANLADRYSTLRRIGACFNCLQKGHRTVDCSSEHSCKKCSKRHHTTLHPNDTPMKK
NDSPPLVVGPSDGDKRNEQQASSQNRDSSVGAGAPKPEGGQEQQRSNLLHTATSGKQILLSTAVILVYGRANNPYPCRVL
LDSGSHTNFVSEHFAALLGLKKQPANYSISGLNETRTKIRFKIHAKLKSRLTDYTACLEMLVVPKITGDLPVTKVDSRAI
TIPEDIHLADPSFGVPDKVDMLLGAEIFFEMLKSGRVQLPNCSAILQETQFGWVLSGSVPEKEPSVLHSLCARAEEDIGH
LVKRFWEIEAYCDPIAQTQTAEEECLDHFRQTHERTAEGRYIVRLPFNDLKQQLGESRTMAEKRFLALERRLDKAPVLKD
QYMSFLREYELLGHMELNNNAADKAPQSAYYLPHHYVLKPSSRTTKLRVVFDGSAESTTGVSINNTQMIGPTVQNDLISI
VSNFRAYKYGITADIPKMYRQVEVHADDRRYQRIVHRSNCDQPLQTYDLRTVTYGLASSPFLATMALKQLAIDEGTQYPL
AAVAVEKSFYIDDVLTGANTLEDALELKTQIIGLLRKGCFDVHKICSNSEAVLQDVPQDMRESVVNIEDPSINTVIKTLG
VAWRPQEDCFTFVVLVDDAVGSDRLTKRMILSQIARIFDPLGFVGPVVTAAKLIMRELWSLNLDWDQPVPSEMANFWMDF
RSQLRWLNELKIPRWILADGARSVELHGFADASDLAYGACLYTRIVKDDGSAALKLICSKSRILPRKKGKQKEITTPRAE
LLAALLLSRLAVKQLEALDVKFESVILWSDSQIVLCWLKKSPESLAVYVGNRVHEIRELTNRFTWNYIPSKSNPADSISR
GVEPKNLQSDELWWHGPPTLRHTDSGFDEPNAIEEDQLPELRKTVLVTTPEHPRLQLFDRISRYPIMQRTMAYVVRFCDY
VKSGRTTITKGLPTTSEISRASALIIRLVQKESFKLEISALQAGKEFNFSTRNLNPFVDEADGILRVGGRLKNSSLPYHQ
KHPPALLPKKHPVTVALIRYLHRSNMHIGQRSLLGIVRQRYWPLDARSTIRKLVHQCIPCFRMKPTRATQLMGNLPDDRV
QPSPVFANTGLDFAGPFKIRPNAKMKNAPTLKGYVCVFVCMATRALHLEAVSDLTTEGFMGALQRFVSRRGVVSKLYSDN
ATNFEGANNEMERLATLFREEQHQLKLNEFCTQRAIDWSFIPPRSPHFGGIWEAGVKSVKSHLKMIMAEHKLSFEQFSTV
LVQIEAILNSRPLTQLSDDPNDVSAITPAHFLIGREFQAILEPSYQHIPQGRLSTWQLVQDLKQRFWKAWTHDYLHELQK
LQRDFKVTKFQVGALVLIVDENSPPLHWQLARIVELHQGSDGHTRVVTLRTKDGTTKRAVKKICLLPLDNERDRSAE
>BEL-233_AA#LTR/Pao 14-6232 via tfasty with BEL-643_AA, 2 frameshifts and 1 stopcodon. [Aedes aegypti]
MSQSDLTSNLSDTEELDFTITPCSACNKTSTTNEPMVGCDACNRWFHYRCVGVTEAVKKEKRWFCPEIVCQETAKKAKKT
SSRKNSNRSKPDQVQAAVQGTAQEQKLKAMEEEYARQMEDLENEKILREKQMELQKxALKEKRLQIERELREKELAQEKL
LLDRALEEKTEHFEKMKTMRLSYKKCMDGLDQEMQNMRRSYEEAQGKKPERPHPSGLTNEKQRDLPKSSVVNEAMFRRNN
DPGSVNHLKALNDECSSDEEDDDDEEDYYEDEGNTECITGGSNTAPYGLGQQCSGPTKSQLAARSGVSKKLPVFTGKPED
WPLFYGSYVASNQACGFSDVENLVRLQESLKGPALESVRGQLILPKCVPKIIEKLRQLYGRPELILQSHLERIRKLDPPK
PEKLASFVPFGNAIEQLCEHLEAADLQQHMVNPILIQDLVDKLPANDKRGWVRYKKSKKQVTLRTFTDFVGAGAAPRAPP
RGGPPGPAPGGRRAAPARPGPGRAGPPGPGGGGARPGRGGPAPRRGAGRAGAGAGAGPPRPPARAPRRGPPPRGPRGRRP
RRGAPRPRRGAAAAGPGGRRRRAPPARRPARRIVEEACEANVCLEQDTRFGRSNRNINSGGRSRAMENGVLMNHEATNST
AGIPSERSRLKACKACQRTDHRLRFCEDFRKMNYADRMHIVTRWKLCNICLNDHGNATCKFKIHCDVGGCQQRHNPLLHP
AGGAFGTSVHIRTTVSVLFRIIPVRLYCGNRTVTTLAFLDEGASVTMIENELVDSLGLVGVPERLTITWTADISRVEKSA
KRVSVWTSAIDDHERLLLDYVYTVESLRLPMQSLDARTLSEQYKHLRNLPITSYRDARPGMLIGLNNLHTFAPIEAKCGA
PGEPIAVRCKLGWTVYGPRKETASNSNAVVGFHDGVSNEDLHDLIKTHYALEESVVTVKRESREDERALDILRRTTKRIG
NRYETGLLWKDDQVTFPNSYPMAVRRLMHLERKLAKDPELYENVRRQIAEYQQKGYAHLASEEEISGTDPRKVWYLPLNV
VLNPRKPGKMRLVWDAAASVDGVSLNSQLITGPDMLTPLISVVSRFREHRIAFGADIREMYHHLRITEADKQAQRFLFRM
NKEDPINVYVMDVAKFGSTCSPCSAQYVKNQNAMEYATTYPDAAAAIIDGHYVDDYFDSVETIEEAIQRAKEVSFIHAQG
GFELRNWISNAPEVLHGLGEIKAAQPVHFGRAKESDSERVLGIIWSPDRDSFSFSAEHREHLQVYLSLQKKPTKRIILSC
VMGFFDPLGLLTPFTVHGKTLVQDLWRTGCTWDDEVNDDCWMKWKRWIGLLPEVEAIRIPRCYFGDAPWSSVQSIELHIF
TDASEYAYGCVGYLRTVIEGDVRCCLVMSRSKVAPLKRQSIPRLELMAAVLGARMLHTILNTHSIKFQRHILWTDSQTVR
SWILSDQSKFKQFVAFRIGEILELTRSTDWRWVPSKLNAADVLTKWGRGPPLQSDGSWFAGPTFLLDPEENWPTQALSIE
ETNEEVRAVVLHHEAIMVEKVINSERFSRWTRLLRSTATVLRFIDNCKKKKDGLPLFTSKATLNQMPMIKGERLTICRPL
QQEELQRAENILWKLVQNQSFPDEVAILLQNRGINDGQRPMSIEKSSTLYKLTPFLDENSVIRMGGRMEASESLPFDMKY
PIILSRFHDVTRKVILHFHERYGHANQETVVNELRQKFRIPNLRTTVGQIVRSCCKCKVMHSRPRVPMMGPLPVQRISPQ
LRPFNAVGVDYLGPVEVTVGRRIEKRWIALFTCLSVRAVHLEVAHSLSSQSCLMAIRRFICRRGCPENFFSDNGTNFKGA
SKELLKRVEVDSAEAVSSSTTKWNFNPPGAPHMGGVWERMVRSVKEAMLALNDGRKLTDEILMTTLGEAEDMINTRPLTY
KSLEPSEVEAITPNHFLRGTVRDLDLNRNGPTELSEALRNMYKRSQYLADKMWERWYKEYLPTINQRTKWFDDPKALQIG
DLVFVMDGKSRKNWTRGIIEEVFAGQDGRIRQANVRTAGGVFRRAAANLAVLEIQDGKSGFSGELVPELRAGE
>BEL-89_CQ#LTR/Pao 1475-6748  [Culex quinquefasciatus]
MPRLPKSTVATATTSLKVLLAKLKSHQASFNIICQFKDDYPEDATANQINVRLERLDELWELMSEVTSDIMAHDDFEGTT
ATFDKERSSWENLYYEVKSFLLDKLKDFTQPNLNQSTLPADQSTSSGSMDHVRLPPITLQKFDGNIDEWLSFRDLYTSLI
HWKTDLPDVEKFHYLRSSLIGEALSHIANIKISKANYALAWETLTKEYNNHKLLKKKQAQSFFELPVLVKESAKDLHKLV
ESFNMIVQSLDQVVQPNDYKDLLLVELLSSRLDPATRRGWEEFTSTKETDSLKNLTDFLTRRVRILEALPVKTSEYKQDS
NAAAKKKPFQVRVSHNAVQKQISKCPACPESHGLYICPTFQKMSVASRESFIRNNNLCRNCLRSGHQAKKCTSRFSCRNC
KARHHTMVCFQPEGGGNARSNSTEMVPTTSNNNQRQSTPGETASTAAGEQVSSHVANRRTSKILLATAVVLIENEHGLRV
SARALLDSGSECNFISEKLCQQLRIQREKVDVSITGIGNATTKAKHRVQATIKSRFSIFSRDLHFIVLPKVTVDLPMTQV
DITEWEIPDGIDLADPSFFKPGSVDLVIGIQAFFSFFKTGKELSLGNGLPTLTESVFGWIISGEVVESSQPTTITCNMAL
TDRLDELLERFWACEEVGDSNNYSVDETRCEEQYQRTVKRAPDGRYTVTLPKHEGGLEQLGDSEEIATKRLYGLERRLEK
DLELRKQYNDFMTEYITLGHMEKVDDDSRANVKRCFLPHHPVLRESSTTTKCRVVFDASCKTSTGVSLNDTLLVGPIVQQ
DLRTIMLRARVRQVMLVADVEKMFRQTDMDPEDRPLQSIKWRFGPDEEVASYELSTVTYGTKPAPFLATRTLKQLATDER
ERFPLAAESVDDDIYMDDVICGAADLDTAINLRQQYDGMMASGGLRLRKWASNWEDALKGVPNENLAFADEVSWDQDASV
KTLGLTWLPRTDQFRFNFQIPEIKSNQPLTKRIVTSIVARLFDPLGLIGACVVGAKIYLQELWDLIDKETGKPIDWDTEL
PATVGEKIRRFLLKIPHLNELRIPRCVLARGATKFELHCFTDASEKAYGACIYLRSMDDEGNISVHLLTSKSKVAPRKLQ
TLPRLELCGAYLGALLVEKVLQALKVSVNVYYWTDSTCVLMWLRAVPSTWVTYVANRVAKIQALTAGHTWHHVPGTINPA
DLISRGIPPDMIGSNVIWWEGPIFLKLEKDQWPSQPTVSPDEAPERRKTACTATQEQTPFSVDFVSRYSSYMKLVRSTAY
WLRLKAMLRHQTSPKQHKFLSATEFKRAELAIIGMVQREVFADELKALSEGKSVARNSPLRWFTPAVDKNGILRVGGRLS
HSQETHDTKHPMVLPAKHPLTQLIFEDYHEQLLHAGPQQLLAAVRQRFWPLGGRNTARSVYHRCQRCFRAKPIVLQQQMG
QLPSARVTACKPFLKVGLDFFGPVFTKAGRGRTAIKSYVAVFVCMCTKAVHMEHVSDLSTERFLQALRRFIARRGRPSDI
YSDNGTNFVGARNQLLELFNILESDREVICREATKEGINWHFNPPSAPHFGGLWEAAVRSAKYHLLRVLGNSTVSAEDFN
TLLVQVEGVLNSRPLTPLSDDPTDLEPLTPAHFLTGGPIHALPEPDYSNEKLNRLSRWQLVQRQLQDFWTRWRKEYLTQL
QAKPKNWKSPVKVDVGMLVIIVDENQPPMRWKLGRIEELHPGEDGVVRVVTVRTATRSYKRPVVKLCILPTPDSESS
>BEL-64_CQ#LTR/Pao 564-5961 via tfasty with BEL-13_CQ, 1 frameshift. [Culex quinquefasciatus]
MAPGLRALFHQERFYLDTLTNAKQFVEGYKEAQHSGQLAGWKQRIDGLDDKFHANRLAIELSLDDDEDKSKSDKVTAKPE
DAAAQAKEDADKDAAEESNRLIRKKFELDYVLVYSFLVNEIQKQTVAPQAEVNPASTGRSRVKLPDIXLPNFNGSILDWI
TFRDTFESLIHSNAXLPPIDKFTYLVGSMTPKARERIDNIDVTAANYPLAWZALEERFDNKKLIVKAYMDVLFAIEPMRK
ECYESLAXLVDGFERNLNMIKKLDVXTXGWGAVLXHMVCARLDHSTLRQWESHHSSKDVPDYKELXEFLKGHLSVLQSLP
TKSSSKESHKQDTGRPLKSKTVHAVTSPATGLRSCPFCSKSTHSAFKCEVFQGLPVPQRFDLVKKKNLCINCLSSEHMVR
NCSSGTCRVNKCHQKHHTMLHYQRTIAQRIPTNPSCRRRSHPPLSESPPNPSSSQSSPPLPRRASQPPSATSLPVSTNSP
GAPRALPATVLLQTAIVKVLDFYGNHQWARVLLDPASQLNLITENIVQKLKLTPLQVSPSNRRSRKLDGDIVARCPRSDW
VTLLGLQVRSRSFHILKRITQDLPTRTFDPTSWKLPTNITLADPKFFEPSSIDLLLGMELYYDLLLDGFTKLGPEKPILQ
NTVFGWVASGKIGSGQAEGALKMARVCSDQSLDQLLNRFWEVESCRSASTQSMEEVACEEHFVGNTYRDESGRFVVTLPK
QPSVLNQLGDSKKIATRRFLALERRLDANPQLKQVYTNFIEEYHQLGHMREVEDVSSHPAGPSYYLPHHGVEKADSTTTK
LRVVFDASCRTDSGVALNQALMVGSVVQDDLFAIRLRFRMNRIALIADIEKMYRQIRIHPSDYQLQRILWRNSSSEPLRT
FELTTVTYGTASAPFLATRCLNELSKQGAEDYPLASLALGRDFYVDDMLTGVYDEEEGEELCKQLLSLLPSAGFSLRKWA
SNSAEVLSKIPPELRDERSVLGLESHTTPIKTLGIQWQPATDTYSYAVPIWSTQSVITRRVVASDLAKLFLPLGLLGPVI
VLAKIFVQSLWEENKSWDAPLKPEQQQYWWEYRNSLEDIPSISIPRWVACASDPVLVELHGYCDASERAYGANIYIRTVS
RDGTISVRLLCAKSKVAPSGKSKNSVLLSLPLLELSSALLLAHLYHKVAASLDLKTKPFFWTDSMIVLRYIRSPPARWKK
FVANRVAEIQRLTAGGIWSHCPGAENPADIISRGMSPAELRDTPAWWISHEWLNRESRFWPPINQPLPDYLPGIAQAERA
VALPVQAVKPNELFAIQSSFPLLLRLVAYLRRFQHNASSRDRNNRRIGHLTTLELTDATKILVRIAQREAFARDLAEIES
SGQVSHRSELKNLAPILVDGVLRVGGRLKHAAISEDRKHPMILPARHPLTERILVHYHEKHLHAGPQLLVACVRERFWPL
RVRNSARTIVHTCVNCYRCKPTTSEQLMGDLPQQRVTPTLPFLNTGVDLCGPFQYRKAPRAAPTKCYVAVFVCLVTKAAH
IELVYDLSTAAFLAALHRFIARRGKPKLIQCDNATNFKGAERELEKLRKQFINQQLQAAVVNRCADDGIDFKFIPPRSPN
FGGLWEAAVKSFKKHLRATIGNSVLSQDEFVTLLARIEACLNSRPLTPLSADPNDLEVLTPGHFLTFRPLTSPPEPDLSE
IPRNRLDRWQENQELLRRIWKRWTIDYLSGLHPRTKWTQKRDNINVGTLVLLKEDNLPPLKWRYGRVIRVCRGDDDNIRV
VVVRTADGEYTRSISKICVLPLRQPIADVAGAANPNPED
>BEL-61_CQ#LTR/Pao 333-2990 [Culex quinquefasciatus]
MWRSITSMKLEDAFPQRAHAKQKIKKLRDIILGLKNPSLRQLTRLRQHLWELYDEYGNAHSCIVGNVPDNDLAQQEEEYN
DFDHLFNEAGVPLEEKLIALRSAAPKTSATYRVEHQQHPWGRSVSNFYGCSSWSTSMMSCESGQPELSGQATNLNQRSRL
RNLEADVVLRNHHPPTSSPSSPPEPRSRSQNLEPDTALRSCMPPTNGPSCRSKPTSASDVLDTEVVMRDHLQPQTEANPT
DLPESTTSSEVTKTNAKCVPLQPVQRNPNESRNGRVLPDDGIYTTSAQTPNSVLNHEANPIATDNGLESQVETDERRKLA
IPTVTTLVNTDRCSEDSGSRPEAEKIPTVLPSFPKPDLFDSQRSLMDGDTRTKEREPLSAVNLRNEKTNSLSVEHGSSLM
IIQWDVVTLWTNAELNPPLPTAANAPDKRRPTIACPNGPNPPPHGNRKKHAVNKTAAPNPRKTDGLSPKFPDQLHAVLCR
GAPHEQRPTSSTSGDLRDTGAPEPNRVNATHQHHGEKPLQKRKSETEQLTKKCARYERKGDSKHALKRLQHRAAPKKSIP
TSEALNRRPHLDEPPDLPPKRSTIAAVRWTCLKQNRTNGSLCCSELKATTVKSKTKPKSPRSRSLWTISSTAAAVLVSML
PFLLAFRHNIHAKYCENDFVGRETSFPEIGRGPCEQTVAPKSIEVNRLGVSSHTVRQLRLLDGRQRRTIPSQPTESVPLE
NASRGKKSVQPLHDHTKLFQRNQPNWNEQACMVCSESPQCDLPDPGSFKSSSTKHPNLPQRLQQIASGREKKPPQKQLHA
RSPKTVQPTGKSNQADQRGSKSKCIHTGSQHLKAPQKVFQTSEALDFLLHLCEAPASPRGRRHIATLCRIRQKGIPTKTR
RCWSNL
>BEL-67_CQ#LTR/Pao 48-5881 via tfasty with BEL-631_AA, 1 frameshift and 1 stopcodon. [Culex quinquefasciatus]
MSSHPSTKGGDAGECCIVCREEACNETVKCDRCRRRFHFKCVGVSQELDGWRCAICWNEEPVFKTNSDGAGTSGLKPIPK
FEELLTPVGPGKKKPSADPAKKVTKPKKELKPRPKPTPKPNPKPDPKPNPEPDPKPAPEPIPTPVPDIPKLPPKKAKSLV
SHISSASGSTSKAVLKLKLQKLEEQRLLIETQMEKERTLLENERTLLERKYEVLEEKYQLLEEQVAGSDGVESRNGSVTE
SRFAPPDASSRHSDSSDEPKQSSYANSSSPGEKTGKHHGKTPQPDRTDFPKRDPCPLTTKQLAARQAVSKDLPCFNGNPA
DWPLFISTFDSTTAMCGFTDEENIFRLVKCLKGRALERVQNRLTHPANLPGILRTLKLMYGQPEAIVHSLIGKIHALPVV
SADDFEALVDFAVTVENFCATVDSCGLEEHLYNVTLLHQLVNKLPPTIKLNWAQYKLSLPGANLASFSNWIYSLAEAAST
IIIPNNPASQPVRNESRSTTKKENAFLNAHSNDTSPEPSNVNKSSKPSEGCLVCKGSCKTIDKCKRFLELSRDSRWAAVR
EFSLCRSCLRRHAGDCQQKCGKDGCQFRHHKLLHNDQKPFSPGTTSSESPSQLPSTNNSEKPKEESSSTLHGCHTHQTKS
SGTLFRYLPVMLSGKRRSVRAYAFLDDGSALTLLDRELADELGLEGEVNPLCLHWTGGTQRQETNSRIVSLEISGTHGGA
KSYPISGVRTVNELMLPFQTMDLDELSQLNTHLLGLPIASYHGVRPQILIGLKNLHLSMILNCREGKPDQPIAVKTRLGW
TVCGGGNPELVPSPVHSVFHVASGDTDEDLHRTMKDYFALDSLGIMKPGGPLLSTEDQRAQSLQESLTRFTGERYETGLL
WRSDKTRLPDSKDMALRRFKCLERRMERDQELAEALKQKMTDHLRKGYIRKLTQQELNQSCQRSWYLPVFPVTNPNKPGK
VRMVWDAAAKSHGVSLNSALLKGPDLLTSLYTVLILFRENPVALTGDIREMFHQVAIRQEDQHCQRFYWRDEDGQLAVYA
MCVMTFGACCSPSSAQYVKNHNAERFTREYPTAAEVIRNQHYVDDMLSSVDTEEEAIEIAKDVKFVHAEGGFEIRNWVTN
SHRVLQALLGDNAEEKNLDLSPEMATEKVLGMWWCTQADVFTFKVGWDRYDRDLLEGRRRPTKREVLSVLMTIFDPLGLI
APFLVHLKILLQDVWRSGVQWDDKINDKxFEKWKIWLRVLPQVERIQIPRCFRLGFPDYDEVQLHTFVDASENAMAATCY
LRFEKDGSIRCSQVAGKTRVAPLRYHSIPKLECESAVVGVRLARTVTESLSFTVDKRFYHTDSRDVICWLNSDHRRYTPF
VASRVSEILENTEVNQWRWVPTKLNVADDATKWEKLPDMTSSSRWFNGPEFLWQPEEAWPRQLEKGCQTDVELRPSLLAH
FTKPDSTIEVSSWKLMLKVAVVVHRFLLNCRRKKAKQPAICGPPTSEELLAAERYVFRQAQREVYADDVAILLRRTEEAI
TNLSPTSSLYKLSPWLDKHGLLRMRGRISACALVTEDAKNPIILPRDHHATQLVIEHNHNKYHHQNHETVINELRQRFSI
PRLRVVYANVRKNCQRCKNDRATPRPPMMADLPPERLDALARPFTHVGIDYFGPLVVSVGRRTEKRWGMLITCLTTRAIH
IEVVHSLSTDSCIMGLRNFSARRGTPRTIYSDRGTCFIGAKREIHEATENIKLEDVMKEFVSVETTWKFNPPLSPHMGGS
WERLIGIVKRNLMAIRPVRNPSDEVLRNLLTEIEHTVNSRPLTHVPVDDESAPALTPNHFLLGTSDGSKPTCTLDDDGMV
LRRSWRTSQVLANRFWKRWLNDYLPEITRRTKWFCNSKPIEIGDIVVIVDPLLPRNCWPKGKIIGTSISKKDGQTRAATV
RTSTGVYERPVAKLAVLDVRRD
>BEL-74_CQ#LTR/Pao 704-6166 via tfasty with BEL-37_CQ, 1 stopcodon. [Culex quinquefasciatus]
MSEQQKKVKEEISATPRVTRSVTRKNLLAALTGSGADREDAVTTVEKAVQFPEPLLPAGSAVLSIAEQKELDRRKKEREK
MERNLENLSDRVDTIKQKLFRMKEALGTMDNVHYLNLQLQTLQRCNEEFDTLHSEIVALVKKEDKVKWNQEYLNFEALHG
ELYVNVQTKIANLQKADSNRALTLNASASEFLPRTQVVQNVPHLNVPLPSFDGAPENxYAFKCMFQTVMVRYPNESPAIK
LYHLKNSLVGRAAGKIDQDVINNNDYESAWQLLEDTYEDERLIIDTHIDALLDLPKLTRENGDEMRKLVETCTKHVDALK
NRELPVEGLSEMILVNLISKRLDRESRKLWETSLVRGDLPSFDDLIDFLKDRSRVLQRLPSNASTSQSQAAPRAPGQQQV
VAKPRQTKLFVQTNKESCPCCSSSHPVFKCTEFRKLPVGERFEKVKKAGMCYNCLKPQHRADACASTQHCKTCGKPHHSL
LHSERPENPKKHTEPDQPKNPVDAEKQEETPAAPEQRTVSCCTQTQAAQKQIFLSTAKIVVFGSGNATTTCRALLDCCSE
SNIITERLARKLNMQMLEMKPPITICGLNGMKTTANKIVQTKVSSRVGDFTAVLDFIVTPSITELPTGKVETHTWPLPAG
IELADPTFNVPDDVDVIIGAELFYDVLKKGRVKIGGDFPTLAETAFGWVVSGPARTKLPAGQRRVCQLATTFEDVNRTLS
KFWELESGYFSSKMTVTERTVEKHFEETHSRNAEGRYVVRLPFNELKSQLGDSYENAKRRFGRLMVGLTKNPSKREAYTQ
FMKEYVALGHMKEVNHSPEEGYFLPHHAVYKEASSTTKVRVVFDASAATTTGVSLNDTQLVGPTVQSDLVTIMLRFCTHQ
IVLTADVPKMYRQVQVHPDDRKYQRILWLNDANEMATFELATVTYGCSSAPYLATKALTQLASDEADKFPKAVRVVKEDS
YIDDFLTGGKTAADVVEIYEQLKDMLSRGGFGVHKFCSNSAEVLKHIPAELQEKLVDFETSEINDTIKTLGLIWNPNYDY
FTFNVPHLVLKGSRPTKKIVLSEIGKLFDPLGFLGPVVTKAKLMMQKLWELKLGWDTELPDEQMQRWLVFREQLVLVRNI
KKRRCVIPADAKKLELLGYCDASKAAYGAVLYVKSELKHGTINIQPVCSKSRVAPLKPTTIPRLEACGMVVLAELTHKTL
GALNVKFDRVRLFSDSMICLNWLKKSPAQLNEFVCNRVATIVELTQNYEWGFVRSENNPADSLSRGLDPEELIDDELWWD
CDPNQRQPSDTSEAEVPELADEDLPELRSAKVVLAVTVEKPCTNFNRLSNINRLYRAWAYVWRFIEITRSKKRNPPSNPL
TASELSRATTTIVKIIQQEAFTEEIKQLRTGQAKRNKLSSLAPFLDGDGLIRVGGRLKYSNIPYAGKHQILLPEKHPFVT
LLVRHLHELNLHVGQNALVSMIRQQYWPIKVKNTVKRVTFDCVICFKHRPPQVHQPMGELPSYRVTPAPVFASTGVDFAG
PFTLRESGRKPKFYKAYVAVFVCMAVKAVHLELCTDLRTETFLAALQRFTSRRGLPSNLHSDNATTFVGAKNELAELRKL
FENQVHKDKLADFCSSKGITWHFIPPRSPHFGGIWEAGVKAMKYLLKRVVGETRLTYEEMTTFLAQAEATMNSRPMCPLS
DDPNDLQALTPSHFLIGRPAHALPEPSYEQEKIGRLSRWQHVQYMREHFWKRWSADYLHTLQQRQKWKDGVLDIKVGALV
LLREENIPPQQWKKGRITATHPGEDGVVRVVTVKTASSEYKRAVTRICLFPDVDSNDPTGG
>BEL-68_CQ#LTR/Pao 32-6042 via tfasty with BEL-60_CQ, 1 frameshift. [Culex quinquefasciatus]
MSNKSDSGVNAGAGSTAKKWKTCGKCGKPGQSRMVTCSECQSSFHYECVRITSEVLDGPWVCNGCLRRTIEANNNVLQIK
LQEEQQKRMQHDQQQRQLERQWRELNPDLNPQQSRNVEFLRLGDQIVKIVRQGDSPLAESTPVNLDSELAPRQDWMEARL
RQLDNYNQDLLNQIDMLQRLNPQGTESGARNPLYEFPPPNNGSGGKTDAVRGRPSGLLDPIPERKEPAPSTSESVGSIAT
KVSRGSVALRAQRLKALEERQALERKQLEEKLALEQELLEQETVAGSDVEQDGSASKSDRNSSTDSNFLNITNWLEDLER
SGEGAVSTPRGNRTKEEGRSRPDSSEQRDSVSLPTDQHHPPPKNPARLNSNQLAARHTVKDLPRFNGDPEDWPRFIAAYE
RTTRMCGFGNDENLDRLERSLYDRALFYVKGLLLYPENVPLIIKTLEIHCGNPELIVETMVQRVRAMSPPKADQMETIID
FGIAVQNLCATMTACRMNECLYNVALLQELVERLPPTIKINWALHRKSKKTVSLADFGEWLGTLVEALSKVTRPPAGPKH
QIGQRDRRNEQIHVHSDDVKERNASKGCHVCKEDCQSLEKCGEFGKMSPLSRWKLIKEMDICRKCLKKHIRACDSKVPCG
TNGCPFLHHKLLHDDAKHKLPEQVTQDKPKEDCNAHQCCLGSVLFKYVKITLHGNGKSVPTYAFLDSGSTCSLMEHSLWE
ELGLDGEKQPLCIGWTAGQGRYEANSVRCTVDVSGTTGKRRNRLKKVHTVESLQLPEQTMNIDDLSEHYGHLANLPVESY
ANVRPRILLGMDNAYLDQPLEAREGGENQPVAALTRLGWTVYGPCSVAEETQAATEFNYHICQCETLQAEMKQYFMLDSL
GTQIPSKPLLSKDDERAVDMLKKRTILDGDRYRTGLLWKFDDVKLPDSRPMALNRLRCLEKRMIREPELATALQAKIEDY
EQKGYIRKLTDAEERADRDRVWYLPIFVVTNPNKPGKLRIVWDAAAEVRGISLNSVLLKGPDQVTSLVDVLLRFREYRTA
VTGDIKEMFHQVRVHPDDQHCQRFLWNNGAPGSTPSVYVMQVMTFGASCSPSCAQFVKNINAERFAEDSPAAAKAIINDH
YVDDMLSSVETEQEAIKLASSVRDIHGQGGFEIRGWRSNSKAVLAALNSQECEDKNLSEASQFSTEKVLGMWWDSSTDTF
TFRLPTKPDKDLLNGLRVPTKKEVVRVLMSIFDPLGLLANVLMFLKVLIQEIWRSGIGWNATITPEQYEKWLVWLKVIEK
VEAVSIPRCYRQITSSSSKTNVQLHTFVDASTNGCATVAFLRFEEEDRIECAFVAGKTRVAPNKLTSIPRLEIDAGTMGV
RLAQKIMEGLRIVIHQRFFWTDARDVLCWLHADHRNYSQFVGFRVAEILEKSNLAEWNYCPSKLNPADDGTKWTKIPDLS
EKSRWLHVICFIQQKMSEWPNKLIHIGTTTTELKHSVGVHCVTAQVINPEDFSTWKRLLRYTVHCKRYVRNLKETTSNRP
RTTGEITQEELLAAEAYLHRLAQEAEYIEEIAILIKAGKGNPNGLQIPKGSPIFKLSPYLDQFGVLRMQGRTVACEFVDH
NAACPVILPRNHHITQLIIRSMHFRYHHLNHETVVNELRQKYRIPQLRRACFAVRASCQDCKNRYARPSPPLMAELPPAR
LAAFTRPFSYTGVDYFGPISVAVGRRVEKRWGVLLTCLVTRAVHIEIAHTLTTDSCILALRNFMAIRGTPLELISDQGTN
FIGADRELKKAYQKVDQNQLIREFTTTNTKWTFNPPSSPHMGGSWERLVQSLLKVLNQMKLPRNPSDEVLRNTLLEISNI
VNSRPLTYIPVEDDNTPALTPNHFLLGSSSGSKPLVAFDNGHTALRNNWKASQIYANLFWKKWVKEYLPTICRRTKWHQP
VKPIQVGDVVVIADPDHPRNSWPMGRVVSTNTSKDGQVRSAVVRTSERFYERPAVKLAVLDVGVNEGKLPQVPSVPGGNV
TSLG
>BEL5_AG#LTR/Pao 93-5264 [Anopheles genus]
MAEARKVKSLRIQQTATQLSIQAIHTFSKSYNKETQRAEAIIRKQNLQKQYAKFIDLQDELLPLDEGNEAENLALRQTVE
SAYYDAEANLASAVEANDKKPCVPASNIKLPDVKLPVFDGKPQNWSSFHSIFVAMIDSAELYSGVQKLYYLRTSLSGPAL
QLIQSVPISEENYSVAWNLLLNHYNHPKRLKQLHVEALFEDAALKKECANELRKLIENFEANVNALTQLGEPTAQWDTLL
IQMLSRQLDPSTLRSWKEHSAEKKIDSYSDLVAFLYRRVGVLEVLPSTSSGKPPKQRVFATTTMPNNNTKGCACCNRDHP
VYTCDEFKKLSLNAKQKVITQHKLCYNCLRPGHHLRDCKSASTCKSCHKRHHTQLCSLPQPSPTVPSSEEDQRDPPTTLA
STSVVESITCASAGQHKTVLLATATVIIVDDEGHKHNARVLLDSGSESCFITENLAQQMKSTRERSNLCISGISSTNTTA
KQSIRATLRSRVGRYFANLQFFILPRVTGNLPSSSIDTTGWNLPDNIFLADPHFDCIGRIDVLIGAEVFFDIMRPAGRIL
LGKDQPVLVNSELGWIVSGPAVSTLTPTSQASSITVNHASTTVQDVHKLMERFWXIEEGEIVNAQSNEHAACEEHFRRTV
SRNSSGRYVVRLPLKEHLLTKLVDNRKAAVRRFHFLQSRLSSNNEFRNSYSSFIDEYAELGHMKRISEEEYNNTNQHHYY
LPHHAVTRQESLTTKLRVVFDASSKTSSGISLNDVLMVGPTIQDDIRSIIMRARKHSIMIVADIKMMYRQVLVDXRDTSL
QLIVWKPTPSESLQTYKLCTVTYGTASAPYLATRVLSQLADDEGSSYPIAAKVLKKDFYVDDLLTGTSTAAEASEVITQL
TALVSKGGFTLRKWATNDEQVRQTISKDKLSEDESFCFDRDQIIKTLGLHWHPLNDSMTYRIKPFEEKLITKRSTLSGIA
RLFDPIGLIGPVVTKAKIFMQSLWTLKASDGSIWNWDTELPEQLQKQWLSFKNELNLLNTIQIQRCVLLNEATSVQLHIF
ADASQTAYGACAYLRSTNKAGQIKTSLVASRSRVAPLKSQSIPRLELCSALVASELYKSIQQAMQLDADIYFWLDSTVAL
YWIQASPSKWNTFVGNRVSKIQQATSSCTWSHINGQENPADHISRGLTASELVNCDLWWNGPPWLQLDQEQWPKPQLSSQ
LPSEVSIEGRSITTTAAATKSPPCDAILLVNELLSKFSDYHKLLRVIAYCFRMRTKRDSSQETVVISTDELWNAEIRILQ
VVQRDIFEKEWTQLRQNSPVSNKSRLKWFHPFLCDDNLIRIGGRLSKSNQPFESKHQILLSAGHPLAEMLIRHLHKKHHH
AAPQLLITILRQKYWVIGARSLAKRICHECVPCCRARPRLLEQFMAELPTSRITPSRPFSIVGVDYWGPIGLSPIHRRAS
SGKAFVAVFICFATKAVHLELVANLTTAKFIQAFRRFVARRGLCSDIHSDNGRNFLGASRELRALVTSKQHRIEIIQECT
SQGMRWHFNPPKASHFGGLWESAIHSAQKHFFRVLGKTTLPQDDMETLLCQIECCLNSRPLVPLSDDPSDLEPLTPGHFL
VGSNLKAVPDNKLEDIPSNRLKHYQLVQKLLQQIWTRWSAEYLATLQPRSKWLKPPVKIDVGQLVLVKDESTTPLHWPLG
RIIKTHPGDDGVARVVTLKTASGEYTRPIAKLCLLPVTSMVQN
>BEL2_MH#LTR/Pao 212-8348 via tfasty with CER13_CE, 3 frameshifts and 4 stopcodons. [Meloidogyne hapla]
MSGTIRSTIAPSIIRLGRYLDQVRPILDADERTEEGIELLQKMLIKIRRAIALVDEKVEKWEKYIKNLTANDKAAEEDIF
ARYSINERHFLEWIDLGREAIVDIEIALTEGSDAHSTQSEHSEEIGVGLNRTNEVRRNIPTRNEVPVRNEQVLPPHLPRT
RLPEFYGDSLRWPEFWQAFERTVDCLNIDFGLKAHYLIQCLRGKAKRAVLGYRPIEEHYEPLKDALKRQFGNEKAIRDTL
HAELISLPVANESIGSLRSTLRRLSEFVDAYxLWGTWKMKLSVMMAIKNKLPRNIVxELLKMENIRKSRLECNKTERRTF
RNRDLKRRSSKVTRSLSYKNNSQNVQNFNNQRRFTGNSNNQRRAEPARVFTAPKNQRKDISCLFCNGPHLAGNCKQFKFI
GQRMSILSEQNRCLKCLRKGHAKINCNQRYSCGVCKGDHNRIICPKIVEKEKKVQIKENECVNTGQIKENVLNIEDDCEE
NIILMKADLTLKERNNKLNATCFFDSGATVNFLCNELVEKLKLKKIKRMELGVVPFFKKEPVKLKTSCYSLKILLSNGEF
EEILVYSINRNMMPRFRCADLKTNEIVCANIVPDMLIGMKHFWRFFKGIEPLSDYLFKVETTVGPIICGEIHNEKRTSNR
KENLYTILSGNTLENEELNNYWSLETIGVRNDPICKDDKVALDIFNNTIKRKENGSYIVKWPWKTERESLPSNFSLAYKR
FLNLMDKLNKNQELLNKYEEIIKSDLERGVIEKAEKKGEIEHFLPHHPVVNTKKVRIVYDASAKMREGKSLNECLYRGPI
IMPDLAGLLIRFRVPKIAMWADIEKAFHTLELEEEDREVTKFIWVKDTQKPRSTQNIQYFRFAKVPFGVISSPFLLSATV
RHHLEKCDDPVAKIAKENSYVDNIFIGVESTSEAWLAYKTLKKIFKDAQMNLREFVSNDIELNEQFPVEDRLEKNKPKIL
GIPWDICTDKINIVFPVVNFSEKLSKRIVLRQLASMFDPLGLASPSLLSAKLFFQSLWTKENKWDDKISEEKVKKWKEIT
DSWAINPIEINRRVTEIKSEKQLHVFSDASKCAYAACVYIKSQFKEKIYTQILYARNRLKPRKAEVTIPRMELLGVVIAK
RALEFVEKQIGVEIKEKFLWCDSKPVLSWIKAGGKNEKFVENRIKEIRKNNGIKFGYVNTSENPADIATRGLLASDLRKC
HIWWEGPEWLKKPEEDWPNELKFEVEKENNEEDNLEIILNCATKKEENLFNFNNWNSWNKLIKCFMFVSIAARIWIEKGR
KIIKGKFLSEINLENRISSSNFKKVEIFILKIAQSSFRNEKKEDIQTIIDENGLIRLKTRISNCEAEEYFKHPILLPKGC
FAVKLILRKIHEELNHSGVDSTLANFLLKFWTPCARRITKIVIKECKKCQKIISPKFALPEMPLLPKERVRQSRPFEFVG
VDYLGPSICKIEGSKVKFWIALFTCLSTRGIHLDLVTDLSALSFLNILRRFVALRGAPVKIISDNGNQFIVIAKVINAII
EGKWKKEKTKNDEKVFNNYLIEKEIEWKFIPALSPWQGGVYERLVKLVKDCFKRSLGSLILNLEELRTFIKEVEMSINCR
PISHISVEKDGPICLRPIDFMIPSVEMAQKFSKIEDEDFRLGKMSTAEQVQERWMATLRTLQKFWDSxKHDYLIMLRDKA
KWTHHNQRSDLKRGPRIGEIVVVHQEGQPRNVWPLGKIIELDGTPARSAKIKIGNKTFIRPINKISPLEIEENMIEDNSN
KELENEKDLTVEDSKKVDKRNRNTHPMVTRSKVALCLQFVQLIYLITIAFAQPPRYINCKGCFMKCRTFGAEANAVEYIN
KIELCCAGSCLLETNGISRLKFIIPKDKTTLEYKCRATYWGKRYMYRDWISCPAVDPCLRIAGVRERIFNPQCESTESLI
LIGIVVGLILAITLAIGLFALRILSIFGSLLKLIWYILKMPFGILFVQKKNKQKDVSEKLLLNKADNKKRIKRNRRLNKL
SLLALLAIFSNSIQIISGEVEVVVIQAKSEDCQRKGGISTCKMNAINTVTLLPNEQINSLSLKNNKGNIMGELELSMHGL
QIQCNQKILRYLRSYEVKVQSIKRCPAAGTCKAGRCNHIRTKDYVEELSExNDYPGNSFCIEGKSLWGYGCSLPGADCYF
YRVYAVPKSDEIFKLVSCPTWEYSIEVNIGLVSNGTITKKRFTLNPGMTFQWKDIKFTLLDITPPMAPILNSEFIIGERG
IAISENSISHLECHENAANFTKCELELSACNECWLEQEIEKIQCACTDFIIEKLIKDPRKSLPLEINRIRLRRKEDMIIS
ESNYLPILLMIRFEDWSISSNIDITSCKIEPEYLKGCYSCMGAIFKFNCSTEYGSAYAEIKCPGGNTFTAKCNEKGIDQK
IALSFDHSEINEICHVYCSGGTSNFTLKGQLEFILPEKMKVIVKEGSAEIFIENNENWFTNPFSNLQFLDWKNILWDLMN
MQMILIIIFSFALIIFALKLFLKFNPLFKGYKLATSFIIIFYFFLLAGCSIHCLCIECIKIEMIQNRHSFVEKLKIERNL
INHTNFTLFHTKIMMSINFRVSFSLKNDVIRKIEKMSMSQKIQLKNYINKPSFLNISYIEQKTHSLKMFLLVEISADLFR
CDDIEAVWELYVSEAQRTKLRKCVEAAINRGSKLMVSNGKNKDLINLEMLEDWEIVENTPYLYERPREFPVK
>BEL11_AG#LTR/Pao 137-5269 [Anopheles genus]
MSKQDKLRYKELKRHQYIDSINRVKEFLKTFTSEQQNQVSTRLDRLEKIWESFETVQEDIEDLEISEEGVATNARIRAEM
EETYLYAKAQLRSMLPIPAAAEVVSVAANAASSSSSRVKLPLIALPEFAGNFDAWLTFHDTYVSLIHSSTDITAIEKFHY
LRASLKEEAANLIQSISVTSENYDLAWSTIVKRYSNPIILRKKHIRSLISLPKMKETGAVALNRLVDDFRRHVKILEQLK
EPVKSFSSILIELMADKLDDETLRVWEEAHADEDPTFTDMMAFLEKRIRVLETLAIEKCGAVPKKPIKTKVSLHAATTHT
NNVPVCVMCKKNGHSIASCNVFKGTNTQERMRVVSEKRLCRNCLKAGHLAHACASKYNCQQCSQRHHTLLHAHEENSSVL
VGETSSSSTMALASSKKSAVNAILSTVVLVVVDAYGKEHLARALLDNGSQPNAISEHLCQLLRLPRKPASVSIAGVDSTT
TNAKHIVCTEVRSRIYHYRQAMNFLVLKKVTQNIPSTSFSTAAVGVPSNYVLADPDFGTARRVDMIIGAAYFYSLLRGGQ
VHLPNQRNVLIDTVFGWLVAGDTPTFHESQSQTTISCHMMEATDKLQEQLERFWKVEELAITSLSPVEQQCEQYFKQTTN
RDHTGRYVVRMPKHHDYAQMLGDSKAAAQKRFRLLEQRLAKDKHLKQQYDDFMREYVTLGHMFPVPVEEDSMAAVHYLPH
HPVVKESSTTTKVRVVFDGSAKTTTGHSLNDVLHVGPVVQDELLSLVVRFRKYKVAVIADIEKMYRQVSMHPDDRRLQRI
FWRFQETEVVQTFELATVTYGLAPSSFLATRTLLQLAEDEGAPYPLATEAVKKNLYVDDLISGAESIEQAIQLRDELTSL
MSKGGFRFRKWCSNELSVLDGLTPDLLGTTASHEFEATANVKTLGICWEPPNDVFRFTIAIPDVRPYTKRTVLSTIAQLY
DPLGLLSPIIVQAKILLQELWANKLGWDDELPRQLCDKWEEFCEQLPMLARFKIPRFALTPNYNYVELHCFADASEAAYG
ACAYLRSQSIDGTTQVTLLASKSRVAPLKPLTIPRLELCAALLAARLQQKLISAIDMAVNETHMWSDSTITLQWLAAPPR
TWKTFIANRVGEIQAATNGCIWHHVPGIENPADMLSRGVSAELLLESNMWMHGPDWLMNDSSCWPSKSYGQQHFTDDELE
RKGNVVLTAQVVEPDPLLLRYSSFRTLVHVTAYCMRFCHIARGKEQRETSNLSVDEIQNAKIVLVKMVQRQVFPDELRQL
RKKQKLAGGSPLKLLHPFIDKDGVIRVGGRLGHADLPFCVKHPIVIPGYHPFTQLLLRQQHEKVMHGGITSTLSAIREEF
WPLNGRRAVRSTIRACYRCNRANPVPIQQPMGQLPLSRVTANEAFVCTGVDYCGPIMLKPVHRKAAPQKAYLCIFVCMST
KAVHLELVGDLSTSGFLKALDRFIFRRNKPNHIYSDNGTNFVGAKNALHQVYQMLHDEAQNRQINNYLAEEGIEWHLIPP
RAPNFGGLWEAAVKVAKKLLVRQLGVSLLSYEDLATVLIKIEGCMNSRPLTPLSNDPNDLSALTPSHFLIKGMMRPPPET
DIRDVPTNRLDQYQRLQKYAQHFWQRWRTEYLHELAQQQRRNPPEQQVSIGDIVIIKDEQLPPARWPLARIVEVHPGQDG
IVRVVTLKTASGVLKRPSSKICLLECSREF
>BEL19_DR#LTR/Pao 43-5853 [Danio rerio]
MMSRNRTGVSEPDVIRQRRITRPPAYLRDYEVGYTSKHLTFADERSEMLTCIREMREENMQLRQEVRRISDVIANSPVLA
SQDPVAVQQSRVKEAGVSSTPKSTGMLVSFQDYENPRQIEHTPLVPPRDESLLAVSQDRDRELIEELTESLKRVGRLSDS
PSGSGISTPSYHDPHNSNSNSPPRNNASDANIPVRQHNLTRFHYCNTDDSPVLQSSIPPSDAYRTTTDPYYHCVNDRTHY
LSKNARDHLDYFSFDGKQEYNRENRHFLSPGSAYNPYSVPPHALYTQPVQYRGPTPTIPNFSRDDPREFAHLKLALDNVL
PYDASEAFKFQILVDHLKLEDALLVADSYSHSRTPFSDTMRALTDMYGQPHQLALQRITNLMEGPNIRSGDVKSFKSFAL
RVRALVGMLNQLGSTGWTELKCGSHVSRLLAKLPHDLRANFKRFINPIQTPIPTLLEFADWLEYEVRVQVDGNQYGSYPE
YEKHVPRKDKRPSFMPRKLTTVLHGGEQKEVAVENIKKEHAHVERPQDKPKKYCPFCDSFQHYMNQCSNFKLLSKEQVES
WIKAGNRCWRCGRGHLSSKCTLKAKCKRCDRRHLDVLHEVNASAYTMIKSNQKIPQKSTDSEGPTSQTLYLDRPTCGKQV
LLKLSRVIIQSGIKSLETYAVLDDGSERTILMYEAAQRLGLQGDREDLALRTVKQEAQTIQGKVVSFSIVPFSFPDRSYQ
IKGAFTAKELALVQHTYPISDLQKKYRHLRDLPLHEINKAQPLVLIGSDYPHLITPLEPVRLGPPGGPAAVHTKLGWTLQ
GPSSLLKSCLRPQECLFISCLSPEAELLRQVENLWKLDILPYRSEKIISRSRQDAEAIRILEEKTIRIEVQDVKRYATPL
LWKQLPPPLNAPQEAVMGLLCSTERKLSKEPEKAESYDFEIQKLLQSGYVTQLTPAESESSAQSWYIPHHMVQHNGKNRI
VFNCSFEYKGQSLNEYLLPGPTLGSSLLGVLLRFREYPVAICSDVKGMFHQVRLLDEDKPFLRFLWRQGKTSEMPVVHQW
EVLPFGTACSPCCAVFALQSHVKGDLDPTDEVRQTVERNFYVDNCLSSVPTESQAKNLVNRLQCHLMDGGFELRQWACNI
PEVIQHLPNDLKSKSGEIWLSQGIDNPQENALGLIWHCKTDNLVYKPYQREDGEITMRKIYRTLAKLYDPLGYLIPYTTR
AKTVVQLLWDKKREWDDPNLPEDLLAIWHQWENELPNLSQVFLPRCYTSHIQCTVKHRCVHVFCDASERAYGSVAYLCSE
DEQDNRHVSFIAARSRVAPRKQISIPRLELCAALTGAQLGDVLKRELTLNINQFVYWSDSTTVLNWLQSDSCRYRVFVGV
RVTEIQELSDPGSWRYIDSATNPADDVTRGLSLIQLAENSRWKLGPDFLRQPSSCWPKLPVGPASEEVQELKKSIFCGLV
DDIKEQDEPDVHQFSSYSEFLEATARSLHGAADSTFSPSADDFRQAELSILRQCQKHDFPEEYALLREGKAIPTRSRILK
LAPEYDRDLDLIRVGGRLRRCPYLNEEVLHPIVLAPDHPVVKLLIKHYDAQLHHPGAGRVLAEIQRKYWILRGREAIKRH
QHNCLDCRKWRGKPVVPKLSDLPPSSLRLFKPPFYSTGVDCFGPLMVKIGRRIEKRWGIIYKCLTTRAVHLDLLYHMDSD
SFLMSLRRFIARRGKPHELLSDQGTNFKGGANELEDTFNQIQPILRDMLAKDQIRFQFNPPSAPHFGGSWEREVRSVKTA
LRSTLGAQTVTEEVLRTILTEVENILNSRPLGYVSSDIADPDPVTPNSLLMGRPDSSLPQVVYSDSELLSKKRWRHSQVL
SDHFWKHFIHDFLPSLQSRQKWHSERQNIVVGTVVLIVDEQLPRACWKVGTVSSVIPSADGRVRTVTVKVKDQTYTRPVV
KLIELPSLPEDLENSS
>BEL13_DR#LTR/Pao 47-5179 via tfasty with BEL11_AG, 2 frameshifts.  [Danio rerio]
MAEQLERLLRKRRAVRGSTTRLLQDIETEVSKEDPIVDHLRKLLALLSAKEETLLELDIKIEEGTEMDDLENEVENVEEY
KGRIITVKTRAHRVIQKSRESSRQSNTDPPQQGQTVKLPKLIINKFNGEIGQWQDFWNQFDTAIHKNDALSKTEKFNYLK
TYLTGAASKAIAGLMLTDSSYDHAIDLLLNRFGRKDLLINAHMKKLLSLCPVRKSHDVTALRQLYDECEVQIRSLELLGV
VSDAYGSLLCPVLLQMVPDDIALQYSRQRGNSDEWKVAEIMKFLQAEILSRERTVQLLKPSNYKDNQSYQKPFKKQDTAF
EFKQRKHHIPSAAVLQTTSHRPQSCVFCDSTTHKTELCAETDIATRKEKLMKMGRCFLCLGPKHIARFCKSKVSCNSCGS
KHHSAVCEKKEKNAPDSVDKDNVVSSFTSHSLKIQPTKQDHSVLLQTVRAWAEGPGGRISVRCLLDGGSQRSFISERAVR
ALKLPVIKRETFTLHTFGCAEPVTTKRNTVKVTLQNTQQREQKIEIEALQTPQVCTALMKIPGEHIQAELRRKGLQLADY
QDDNACDTELSVLIGADYYWHIVSGHVERITDALVAVESIFGWSVQGPVKMSSVADAACMHSQVNEDTLVSDHLKAFWEI
ESLGITMKQTDSAEEEESLYKFEKTTQYKNGRYEVELPWRPDKPELPDNYRIAKKRFEGLKKRLQSDVVLYHRYNEVVCD
YLEQGIVEEVAEDQSSQPTAKYYMPHHAVLREDKVTTKLRVVFDASSHETDSPSLNDCLLTGPNLNPDLLSILIKFRLNA
IAFTADIKKAFLQISLAEKDRDAVRFLWLAVPPHENKGEKLRVLRMTRVVFGVSPASFLLAATVRKHLKKYEEQNPEVVN
IIKESLYVDDFISSASDVEKAFSITTTAKQIMSTAGMDLCKWTTNCHVLKEKWKTVRNDVVPDKEMPGSVLKVLGLVWRT
ETDDFVFDLTALLDAVAKGENTKRAILKLSARIFDPIGFLTPFTVRVKCLFQEMWTRGLGWDEELPADIEKEWRKWCSEL
AQIHHIVIQRWYGITSEHRHDAQQLHVFCDASERAYSAAAYLLLELNDGTKTTCLVASKSRVAPLKKMSLPCHELMGAVI
GARLGNSLLKPMNMDPQSLHMWTDSMIVLQWIQSPAHKWKQFVSNRVAEIQSITNPAMWSHCRSKDNPADLPTRGQTVTN
LKENELNSCEDNSGMESLLNLAKYSKLNRVLRITAWIKRFMHNSKSSSKRRGELTADEMFEAEKYWIKVTQDSNFRHEIT
LLKAHKGLNADSKIKELKPFLDDDELICVGGRLQQSKFSYREKHPWILPKRARYCELLVQHNHELTMHSGLRDTLVQIRS
KYWILQGRQLVKTILSKCAVCKRFKAKPSQQDTVPLPRDRIVETPPFEVTGIDFAGPLYVKNDRVLCKAYIALFTCAVTR
AVHLELVSSQSTESFLLALKRFVSRRGLCKIIYSDNAKTFKRANQDLSELWQTIKDPQVLEYFSGKGITWRFIVERAAWW
GSFWERLVRSVKTCLRKVLGRASLTFEEMCTLLTEVEAVLNSRPLTFVNNELDDPQPLTPAHFLVGERLTALPPKPFPAD
YDHPTVNKEDMTWRWRYRNRLITVLWNRWRKDYLLDLKSAHSCRIQKPTELKIGDIVLIGEANMPRQSWKLGKIELLFPG
RDGKVRACAVRTSAETVLRRPIQLLYALEIE
>BEL1_MH#LTR/Pao 260-5557 via tfasty with TAS, 2 frameshifts and 2 stopcodons. [Meloidogyne hapla]
MSRPLKSLTKRAAETVQKLLDRGAPKEPDVTDEDYVLGLCETLDQLSIEIEELSEAHSDLKDVHSKWTSLIQRCAQTDKV
ANETAYDETASFYKIEERLNEAGIRLRELRELERRLKSEKRKEERRERTSMTNTSRGQQQFGFRFKPPRQEIGKFSGKQI
DWPEWWQIFEATVHETEGSEEVKHAVLKQCVEGEAKALIAGLKLSDYQVAIDLLKQRYGCEEEYTRSLHTQLENLRPCQF
SGLPxIFQEVERICRLLENNGQNISGQGTWMSLEKKLTIPILREVQTKKALAKSLRIEWDTAAFRRALREVIEKEELVLS
IHGKSPEKGAEVKHNPKGFRNFPNKRRNSNEKEITSTFANTQKFENQAKTNKKPNNFAAKNAKGGRSPPMYPCIFCGKSG
HWGDECRKTNTANERRKKLIDLKRCTLCIKPEHGGNCYKPIRCFHCKGRHNTALCENTYKKWKSRSKLEIFYKILLxSKS
LGKKVILLCRETFIFNPANPERKIKGMVFIDCGSQRSYIRKGIAQKLGLRSSQKEVQRIQPFPANRSPVIEFQADIFRLG
IEKYSYGQLTVEVGQLENLNSLITQMPVVLAAEDEREFDLKSGKIPGSIVEPDVLLGIEYFFELNIRRRKKLNCGLWLAD
TAIGPVIGGKGNITNVSSAIDKSNVIITEEEKFEDETLEEKLDKLYSLDGIGLGDTVNPKINEKIRKEFEAKLTFQNGRY
EAGWLWKEPCPKLPSNYRTAKAMLLTQLENKQKSNPHHLALYEETFADQVKKGIIEEIPRNQSDGGQIHYLTHFPVVRED
KTFTKFRIVFNASGKSRKDNPSLNDCLHQGPVTIQDLCGLLMRSRFPTYLIAGDLQAAFLQISLRPPDRDSVRFLWVSDI
KKPSEAQTDEDLRIFRYARVTFGVNCSPSILGMTVDHHLSKYDSTTAEKLKKAGYVDNFLIGAEENAEVEKDILEARKIF
QDAGWNFREIFTNASKQLNDIPFEKLPIEARTSNLCSGAKQKILGISWDTFSDRLTFKLPTPKLKPKQEWTKRQVLASIA
ECFDPCGIISPTLLKGKWLMQKLWESKMTWDNPLNEELKIEWELIKDEYLSCNTIQVTRRLISWKMTKPTVYELCAFSDA
SDKALGFAVYLRSQNGREIQTALIFAKSRVKPKAQLGKCETKMTIPRMELHAALIATKALDYLEEMLEIKIAKKMLWTDS
QIVIHWLKSPTEQEAFIERRLRPIRKNTVKYVRTEDNPADLTSRGISPNELTSHLTWFSGPQWLRLDENEWPEKVLEYVP
GERTEKLNPQPFHEMCLMTIANAPLIEHNRFSTFKKLKKTIAYVFRVLEKLAIKNSDPQNELLQKIKEITQTHSGQIEPR
EMELAEKFLLKEAQKMHPPDEDTIQNLQLFKDSEKMWRSRGRIEFGNLNEDTKFPIWLPKKAFLTELIIWEMHEKMAHAG
TNVVLASLRMKYWISRKKVQDSTKKCQSCKKFWIKPYAQPPFPSLPAMRVNQFRPFMYSSVDYFGPMTIKLKNAEHIKRW
VAVYTCTSTRAVHLEIAEDLSAQAFLKTFRRFIAHRKKPVLMISDNGTNFKAAEKILKSIFKETQIQKFASDHEIKWIFV
TERAPWKNGLVERMVGLIKYSLRRTVGRRLLEEEEFRTLITEVQTVVNSRPLNFIPDSEQVIPIRPIDFLIPFKEGNTEL
PHLPKADEDDPDYRPQKMTTKENLVEEMRRASDRLNKFWLVWTSDYLLALRERKNMTKKVLSAENSPKAGERETTKLFRY
EHVSIG
>SIV2_gag#LTR/Lenti gi|27311167|ref|NP_758886.1| gag protein [Simian immunodeficiency virus 2]
MGASASGLRGEKLDELEKIRLRPSGKKKYQLKHIIWVSKELDRFGLHEKLLESKEGCEKILSVLFPLVPTGSENLISLYN
TCCCVWCVHAKEKVTDTEEAKEKVKQKLHLVAEKENAASEKEQRAIVTPSGRSKNYPIQIINQTPVHQGISPRTLNAWVK
CIEEKKFSPEIVPMFIALSEGCLPYDLNGMLNAIGDHQGALQIVKDVINEEAADWNLRHPQVGPMPQGVLRNPTGSDIAG
TTSSIEEQIEWTTREQDAVNVGGIYKQWIVLGLQKCVSMYNPVNILDIKQGPKEPFKDYVDRFYKALRAERTDPQVKTWM
TQTLLIQNANPDCKSILKGLGMNPSLEEMPLACQGVGGPKYKAQMMAEAMKEAQSAVMMQNSGGPPRGPPRQPPRNIRCP
NCGKFGHGLRDCISPRKKGCFKCGDLGHIMRNCPKMVNFLGNTPWGSGKPRNFPAMPLTPTAPPMPGMEDPAERMLLDYM
KKGQQQKAESKQEKKERGPYEAAYNSLSSLFGTDQLQ
>MVV_pol#LTR/Lenti gi|21539310|gb|AAM51650.1| pol polyprotein [Maedi-Visna virus]
MWKTGTFSEAVPARDNMPSLWKEGAYAKRLPAKEEQGYEAAGKQQEGATCGAVRAPYVVTEAPPKIEARIGTTWKELLVD
TGADRTIVRKHDNTGIPKGRIKLQGIGGIIEGEKWDQVEIQYKGKSIRGTLVVLPSSPVEVLGRDNMGELGIGLIMANLE
EKKIPVTQVKLKEGCKGPHIAQWPLTREKLEGLKEIIDRLEKEGKLGRAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNK
QTEDLAEAQLGLPHPGGLQKKKHVTVLDIGDAYFTIPLYEPYRQYTCFTLLSPNNLGPCVRYYWRVLPQGWKLSPSVYQF
TMQKILKDWIEVHPMIQFGIYMDDIYIGSDLEIAEHRKIVEELANYIAQFGFMLPEDKRQEGYPAKWLGFELHPDKWKFQ
KHTLADLKEGTITLNKLQKLVGDLVWRQSLIGKSIPNILKLMEGDRALQSERQIEKIHVQEWETCKRKLAEMEGNYYDEE
KDIYGQIDWGNKAIEYIVFQEKGKPLWVNVVHNIKNLSQPQQIIKAAQKLTQEVIVRTGKIPWILLPGKEEDWILEVQIG
NITWMPSFWSCFRGSVRWKRRNVVTEVVEGPTYYTDGGKKNGIGNLGYIASTGEKYRIHEEGTNQQLELRAIEEACKQGP
SKMNIVTDSRYAYEFMLRNWDEEVIKNPIQARIMKIIHEKEKVGVHWVPGHRGIPQNEEIDQYISEIFLAKEGEGILPKR
EEDAGYDLICPQEIHIPAGQVRKIPIDLRLNLKKNQWAMIGTKSSFASKGVFVQGGIIDSGYQGTIQVVVYNSNEMEVII
PQGRKFAQLIIMPLIHEELEPWGETRKTERGKQGFGSTGAYWIENIPKAEEDHNKWHQDANSLHLEFGIPRSAAEDIVQQ
CEVCQENKMPSTLRGGNKRGIDHWQVDYTHYEDKILLVWVETNSGLIYAEKVKGETGQEFRIQVMKWYAMFNPKSLQSDN
GPAFVAEPTQLLMKYLGIEHTTGVPWNPQSQALVERTHQTLKHTLEKFIPMFVAFDSALAAALITLNIKRKGGLGTSPMD
IFIFNKEQQRIQQQSHMNESKIRFCYYRVRKKGHPGDWQGPTQVLWEGEGAIVVKDKPTERYFVVTNKDVRFIPPPKEIQ
KE
>CcNgaro3_yr#LTR/Ngaro gi|46194173|tpg|DAA01998.1| TPA: putative tyrosine recombinase [Coprinopsis cinerea]
PVVTRTAGTAWEKVGHRYPPPARHRQGSLFPLTTNIPPMPVTHHNTRSPKKNHPRFREIIQKHRDRTLNAIRTSSKSPAL
SPNPPTDTKANPPPLPPTRPAARAPKSGSEILKSEYRPHVVAEDRIYAWDTPYARCHRSKLGLPPGLISSSFVTLMGALA
PNTRSTYAAGILRFTQFCDKYGVSEEERMPASYALLTGFMSEWSGKKGDGTIRGWLAGVRAWHQFHHAPWFGDDSWVQLA
RSCVAKEGQAFRKPPRSPVSMEHLIALRRTLRLSDPFHAAVWAAATAAFFGCRRLAEIVVAVKSKFSPKYNVCRSCEPRF
RTHRDGSSAVAFDIPWTKTTKERGALVVLTARTDKWARELGICPVKAMKNHLAVNHGLPLSASLFAYRSGNSWKHLTRAQ
FLEHVMGIWRSAGLGHVSGHSFRIGGAVELLLAGVPPEIVASTGGWTSLAFLLYWRRVEEVLPMSTTRAYHESQLKNSLA
AIFEKFRRDNNLPEYLSTTAQSLRDTDHASD
>DIRS-1_SP_pol#LTR/Ngaro 3439-5076 [Strongylocentrotus purpuratus]
PNVRLGKERFRSLAPTPIRLLRMIPFLKSYTKTGDGQFLHEGFAKGFPLGYKGPRVTVKAINLKSAREREDVLLVKLKHE
VELGRIVGPFESPPFENFRCSPVGLVLKKTPGEFRMIQHLSAPRNNSVNGQIDPKDCSVAYCTLDDAVLSVQAFGGGACM
GKADIKSAFRLLPVHPDDFDLLGICVKGKFYYDRCMPMGCSIACSTFEKFSTFLEYCCRKVADSCNTLHYLDDFFFVGAS
ESECKHLLRSFESMCERFGVPIAAEKTEGPVTKITFLGLEIDSVVGQVRVPQDKLLSLQALISTVLGKEKVTLRTLQSVI
GSLNFVCRAVAPGRAFLRRLIDLTIGVKERHHMIRISLGAREDLKAWLHFLLAFNGRVLFCERHTWSTPDLQFYSDSSGS
IGFGVYFNGKWTQGRWPEGVCTPKYSIAFLELFPIVVGLQLWGGDLGNKRVLFWSDNQTVVSVVNAQTSKCPMIMFLVRQ
LVLICLRHNIRFRARYVPGERNNIADALSRFQASRFRQLAPGADHEATPLPPHLWKIFTKSGQTC
>DIRS-1_SP_gag#LTR/Ngaro 2487-3470 [Strongylocentrotus purpuratus]
MPKAKQKSKRTTVDQAGSSRPRRTATATAPPSQPGSEPLVQAPQPNAGVEQRGPGPSASEYDSWPLVCAGNETLNLNVGP
EQAQQGGLMINDPPVLATPREALGSAVPRALRDRIWKGEFVDLGALLKNVPVPDGSAPMVIALSGSTLQVQPQRGVPRIT
SIEQWTSAFLVFASIYTEKHVVRALEMYKYMDTVRTAARFGGNGWHTYDLQFRLRQAREPTRSWAVIDSELWLMTATAPC
TQSTPAYYGNAFREGSPYGQTNQWEGNAGRRQTTGRPFGRESRGLRYCFNFNSGRCVKQDCVYAHRCQQCGQTSHGRSQC
TLGKRTL
>BEL27_DR#LTR/Pao 40-5964 [Danio rerio]
MMTDHGSNLCTPAKVNEQIDNVQNKEDDEEIEVQSEELDTNVRRSTREQTQTDRMLAYQREESHKAERKLMHAYEKWKAE
ARKARSQLKLDISESELASLIDSLEKEKDSVMNAYIRVRSNVTPPTDMRRKIDACDAVTKDIVKIAYERISGVDGGFDNE
TVKGHLRELLERDYARSVYGSTVSRISSKSSTPISQPSLNSILMAKRIEAAAELAAKEAEYATVIEEREQREKLRLLEEK
QRKELEAQKGEFERLQAMKEVRAARARLEVYDKEETVDTVNQDEGLQQPVSPPTHKPVYLSSVNPTPNISLQRPNADVSQ
LAQAVQDSITLNRLPMPEPTVFSGDPIHFIEWKASFQSLIDKRHISSGDKLYYLKKYVTGPALKVLDGIFYRNDEEAYKD
AWKRLLDRYGQPFIIQRAFREKLACWPKIQSKDSVGLRNFSDFLNSCKDAMPHVKGLEILNDCEENRKLVSKLPDWAAAR
WNRQTTQTLSETQDFPTFQEFAHFMSVEAEVACNPVTSFHALHVSEPNKEKIYFKVSKPKANVFHTKTVTQHDNSKPTGK
VNKPCLFCQNGEHQIHECSKFSARSLEERRQFVKDTRLCYGCLRLGHSAKDCRSRHCCNTCKGRHPTCLHDDSFNRKVRS
SSAQSPENAHEGVATMSLSVESGCTPVNTSMIVPVWLSTHKEPVSEKLVYALLDTQSDSVFIECAVCKSLKVDSCPVTLK
LTTLVGKDSLMSSERISGLRVRGFNSSLIIDLPPAYTKECIPVDRAHIPTMETASHWKHLATLADKIPPLQNCEVGLLIG
YNCSRALAPREVILGTENEPYAVRTDLGWSIIGPSLTHFEPQSSAAMCHRVSIKEIPAVTPTDVIKVLESDFKDTEGHTK
VTSQEDIMFLRKLQENIRLNKDSHLEMPQPFRKRPYLPDNKPLAVIRLQHLKRRLMRDQEYREHYVTFMEEVIEKGNAEQ
VFEEGREGERWYIPHHGVYHSKKPGKLRIVFDCSARYKGTSLNDHLLTGPDLRNSLTGILLRFRQYPVALMCDVEKMFHQ
FHVDHADRDYLRFLWWRNGDFNSQPQTFRMTVHLFGASSSPGCANYGLKHLAREGERLYPLGSQFIMQDFYMDDGVSSIE
STEKAIKLAEEARQLCALGSLRLHKFVSNDKEVLKTIPPSECAVDVTAVDLALTDQPLERALGIYWSLEQDNFKFHITVK
DQPATRRGILSIVASLFDPLGFLAPFVLKGKTILQEMCRSGMGWDDNLPADLQSAWEHWKADLVNLEKIEVPRCIMPSGF
GRIIRREIHHFSDASMSGYGQCSYLRLENEQGDISCSLLMAKSRVAPLKITTIPRLELAAAVVSVAVNDMLKEEMNLADA
EAFFWTDSQVVLGYINNEARRFNTFVANRVQRIHRTTTPQQWRYICSDENPADYASRGLSVNNLVTSNWFRGPKVLWEKQ
IPPPMEISKQLPIGDPEVKKVQSLNTQTVQYSCLSDRLTKLSSWSKAIQAVARLIRRVRKDKSHNHSTLAERNDAQCIII
KDLQKQTYAEEITLLCKGKRLPRSNRLYNLDTFVDQDGLLKVGGRLCEASIPNAVKYPVILPKEHQLTKLLIADCHEKMA
HQGKGMTINEIRSRGFWITGVNRTVASFVRQCVRCRKLRGPTEEQKMANLPSERIEPSPPFTYSGMDVFGPFITCKGRKS
NKRYGLLFTCFCCRAIHIEMLDDMSTDAFINGLRCFIAIRGAVHQIRCDQGSNFIGAKNELTKAMEEIDTNRLVTFLAEK
QCDFVFNAPHSSHTGGVWERQIRTVRSVLRSTLSQSSGRLDDSSLRTFFYEAMSIVNSRPLTVDSLTDPSSPEPLTPNHL
LALKPTQALPPPGKFVREDVYARKRWRHVQYLAEQFWGRWHKEYVSNITTRQCWHTPRRNMQVGDIVLEKAVDLPRNEWR
LARIIEAVTDKDGLVRRVKIQFGDRNLGKDGKRPHKPSVVERPVQKLVLLMEAA
>BEL-7_CSa#LTR/Pao 138-6141 via tfasty with BEL1_Cis, 5 frameshifts and 1 stopcodon. [Ciona savignyi]
MNPVELMAQCKEKMQHSYLSAEQLMTDTKNVDAVKKRLANVEDDYMALLAAYASCNDSESKIEVSRHLADSKREKSQFDE
RVKEWVQQCDSGHLDENLNGVEIKSSYTTSSTRSLRRAAHVKLELARLAKSHALQKLSETMQQAELEAEQKRQEADRLRK
QVDRDLEMAEAEVKAWEDDMSVVGERLDELPVSPTPRPLRMLETTPKLLQPPPINVLKPSIPYKKHEASLHTVPARTSAE
YRVLDSYVCHSPDPNMPQPVDPISLSRNLDRDSRVFREQRAQKIERDSVDSLPGNHGSYRELPEYLKRNLPAYEHFQPKF
EREPPRGQLARSQPEDEFLQQRIMLPQPAIKRFNGDPLNYWCFIRAIESHVHSRTKSEESRLVCLLQYCEPSIANKLEIY
SKNRADGYSKARQRLHYEYGQPHIIANACEQRLKRSPDVKPDNTESLMEFSDLIEKCRSSLEDIQEYAGLNSINTMKIII
RKLPYPLQEKWVDRSVDVLHQTGRQAGFMDFVQFVAEKAKVFNSLYGREAVYGGHRDKPAVGAPRRNTKAATYNTVTSDK
GKPTSPALCETPVCSLCAKQHWLSNCPEFDHMPPLKRNEFVRAKSICFKCLQSGHHSRTCHKRRPCTAKDCRGRHHHTML
HGSFTIHHPLPPTRSKFTATPTSMSIGGGHPKENENCRVYLNVVPVKVQHNDVVVHTYAFLDQGSTSTFCEQRLIDKLKI
AGTKRRVLLHTLTDQRMAYEATSVSLTISPLHGGRGDKVAPRCCQSMKFQSQPNTVPDAENLTKFPHLQGLNFPNVKDGS
VTILIGADVPGAFRVQSVRCGSGEGPDAVETPLGWSLFGPSLTSSSMKNSRACYTKVARVLFQREIDCLWKTDFGDGTSV
FDIPTSREDRIAYDLMTKSVKQVKGHFQLPLPWRPRLPRLPDTRLMAEKRLASLKKRLLGNDLLCEKYVDIVQTYILKDY
AEQVPEEEVVTENRTWYLPHHPVLNPRKPDKLRIVFDCAARSKNVSLNDVLMQGPDLVNNLVGVLTRFRTEPIALIADVE
AMFHQVKVEPQDRDALRFLSWPGGNLHSVPVPHRMKVQLFGATSSPSCAAFCLKQAAHVYGNEYDPRVVEIVKRNFYVDD
CLSSVRDANDGIEIVTQLRSLLAKGGFRLTKWLTNDASVLQSIPEEDRAKSVKARQIDDGINERVLGVHWSVTTDEFGFN
VDLMKKPLTRRGILSAVSSLYDPLGFVAPVVLEAKLLLRNACAGRNxNGTDEISEVEADRWRAWLSCLPQLHDVHISRCF
KPKEFGGKLTYEMHHFADASKIAYGAVSYLRITDEENRVHCSFLIGKSRLAPLNTKTIPRLELTAAVLAVKLDRLMRKEL
DILITSSTFWSDSTAVLQMIYNDLENDFPVFVANRLAEIERLSDASRWKYVPTDLNPADEASRGLTAHEITKCGRWLRGP
DFLWKPTDFWPNQSLQMTELPKEFLPLKENLAVTHSTVAYVKEENATDRLIEKYSTLLRLKKATAWFLRFKTYLRSQVRT
SSSPPVLLTSLSVEELKNAESALVMYVQEKHFVTVIDALKRQGRNQLKKSDCMRSMYKLNPILIDNVLRVGGRLANAPIG
YDAKHPVILPHASHLTDLEIAHHHLMVGHSGMGHTWSSLRQEFWVIKGGVAVRRVLGKCLFCRRRNAKPGKQLMADLPQA
RLGYNEPPFSHVGVDYFGPLLVKQGRSEVKRYGCLFTCLTIRAIHIEMAHSLSTDSFIASLRRFIGRRGPPRCIYSDNGT
NFVGAERILRESLQAWNQQQVNEFLRQKGVIWTFNPPTASHMGGAWERMIRSIRRILTTLTNAQLVTDEALGTFLVEVES
ILNSRPLIPVTFDHRDDEPLTPNHLLLMRGAPNLPITSTDKTDCYRRHRWRQVQYLTNEFWKRWVRDYLPIIATRTKWHR
IERNLQQNDIVLLVDETQCRSKWLIGRIVDTLPDKSGIVRTVYVRTSIGVFKRPITKLCLIVDEDERADDRCTNDENENV
R
>BEL-6_DPer#LTR/Pao 555-6032  [Drosophila persimilis]
MSTAESHDLEADPQVEIDNLSVIQTNLIARVNQTVRNFRKDGADRKTKAYFQTRLQTLQRFLGEFEQNHQRLLILRCPST
HSYVSSEVAFRFDEDYTTAFSIISEAYENVCPRAPPVQQNPEPANPSVSSVQLPKLPVPTFTGKFVDWPAFHDAFVQLIH
NNQKLSDVQRFHFLKQALPSDRDEDIQQMALAGNNYATAWSLVLKRYDNKRLQFMYHMNGLYDLPQLTKEQSADIKHMLN
VATVCLNAFKNLDVQHWMAHHLTSRLSSTTLQAWELHLGSSAELATFSQLQSFLNDRLVSIDVFENRGHSTTRTPVPQPV
NQRHPKKSVGNVTYKGNSFHAKTAVAEHTRCPHCSDSHNLRHCPDLLSKDCFARKAIVDHAKACLNCLSRSHALSKCTSK
RNCTQCGQRHHTLLHFPTPAQVATQPHAASHSARSGNSWQYTTSDSSGRATPTQLYARTPLPTQSTAQPLPVVPNTSSGG
HPQSAATDSSVRTHSAQLVSATATHHGPSTVLLATALVTIHNPHTGQSAVVRALVDSGSEGTLITEHTVQALNLKRHPIS
AEIAGVGTTSKNRCTYTTELSLSSCTSQFCTTIDTAFILKTLTSQLPSKSIKLQQCPHLNGIELADPRFYKSQRIDLLLG
ADVIPQILLSDIRRGKENQPIAQHTQLGWIVFGRATSTRSHAVTIRCHHNRLENLVQKFFEMEHLGSAKQLTPEERWCEE
HFKRTHIRQRNGKYLVRLPLKRLFDPSQVLGKSRQIAINRFQMLQRRFQRQPELQAKYSEVMNEYFQLGQVTKVTTKEQQ
HCIISKENGIESTCCTLPHHAVFKEESVTTKVRVVYDASCKTSNGKSLNDVLCTGPALQNDLAGVVLSWRFHRFVFAADI
QKMYRCIDMNAEDSQYQRIFWHDEHNQVAEYYLNTVTFGTASAPYTAIRVIHQLAQDERDRYPLAERVLRHEIYVDDVQS
GASTREGALEIQNQLIGALRSAGMELRKWSANDASLLQDIPPDHLSHKTLLEFEYQDPVKTLGLYWHPHQDYFGFKINFE
ISHAHTKRSLLSTVARLYDPLGFITPCVMTAKAILKDSWMARIKRNDGSLAQLDWDEPLPTELLDRWQGFIQNLPYVEQI
QVPRWLRFNIHELASLQLHVFCDGSSLAYAACAYIRAELPNGMIQTHLLAARSRVTPTKPITIPRVELSGALLAVKLAKW
IRDQLRTAGPPMSTFYWSDATIVLFWINGDPHRWQTFVSNRVGQILEHSTSTQWRHVPTAVNPADCATRGLTPQELAVHP
LWWSGPSWLQQPESQWPASGVPSQDIDRTIIEEKPSVLFQNAVQVSEAPEAFIQNSSSYDRLISVMAYVLRFIHNIQAKG
DKLSGPLSVQELDNALIHLVRSIQQEVYATEILRLKGNKALSGTHKLCQLSPFLDDQQILRVRGRLRNAMHLPISQRQPM
IIPNHHHFTDLVVRNAHRLALHGGTELTLATIRHKFWIVNGKQTVKRILRQCVRCFRHRPKPAAQLMADLPLHRVNPPTR
AFIATGVDYTGAFEIQASRFRGHTNYKAYIAVFICLATKAIHLEAVTGLTTEHFLMALQRFIARRGYCQHMYSDCGTNFI
GADRALQTWQIHLKRELPTTVIPALAARNVQWHFNPPHSPNFGGLWEANVKSVKTHLYRAFSGYKMTYEQLATVLTQIEA
CLNSRPLCPLSAEPEDLAVLTPAHFLIGDSLLAPPDVTTRDVPLTVQFLEGQKMIRQFWKRWSSDWLSHLQARPKWRHET
DNLQVSDLVIVKDDRLPPNEWKLGRIIEVHPGADSLVRVATVKTASGVYKRSVSKLCRLPLPQTSE
>BEL-8_CQ#LTR/Pao 363-5631 via tfasty with BEL4_AG, 1 frameshift and 2 stopcodons. [Culex quinquefasciatus]
MSKQLKQHLIRRNNILGSLKLIHHYDDNFVFDRDFPQLKFRLEKLDHLWDEFNEVQAEIEFSQPLTDEPDAVRTQFENDY
FELKGALSSKLEIATQNTHAPPSPIAPPAFHSSVRLPELKIPDFHGDYDEWLNFHDLFNSLIHSNHHLSSVQKFQYLKSV
LKGDAARRIQNLDVNTANYTLAWNIVKKKYDDKNLLLKQHYMALLSIPSVHKESSTALSELADEFEKRVGVLNKLEESKD
HSNSFLVTLLSIKLDPGTQTAWEHSLEDDQKPTYTDLVAYILKRSRTLQSLKLSQTSQHGTKPEPKVEHKSTRSKTSAYH
STNTSDTLSQCKLCKQEHMLHQCDEFKKLSPQNRFDVAKKHGLCLNCLKANHMMKACTAGSCRTCNKRHHTLLHLNTAAA
DKPPASTVQVAHCQQSSRLASVVESPSSVTYTAEQCHGSLGNTLTAYVRVMCADGTHIHARALLDCASEANFVTESLAQA
LRSKRKPANVDVYGISQTVKKVKHQTTITVSSRVGPYTTSMDFLILPSLTRILPTTNVDVSKWVIPRHLPLADPKFNIAH
DVDMIIGVKHFFAILQGEQLSIGSGLPTLRNTVFGYVVAGDTDAPAQQSVTCNVTAVERLEAAVRKFWEVESFETGKALS
LEERYCENHFVKTHTRAPDGRYVVRLPIREELRSSLGESIAVAQRRFFSTERKFTSNPELNKEYSKFMAECDxLGHMEEV
TPDLSKPHFYLPHHAIQRPESTTTKTRVVFDASCRSSNNISLNDLCYIGPTVQPPLLDTILRFRLPKYVVSVTADAEKMY
RQVLVHPDDRPLQQILWRSTPNEDLKTYQLNTVTYGTAPAPYLATRVLNQLADDEAENYPLAAPQVKRSFYVDDYLSGDN
DENRLMETNRQLIGLLGSGGFTMRKWCSNSSRVLSHIPEKLRDPRTELELSESGSIKTLCLLWQPVAVPDHLSCKVPEYN
STEPITKALILSELSQLFDPTGMAGPVIVRAKMFLQSLWEKNFGxTQELPEEYQEWWKQYRIEIRVLSMLKIPRRVLIDH
SVVIELHCFSDASDKAYGACVYVKSTNSYGRSKVNLLISKSRVCPRRRLTIPRLELCAALLGAQLTAAVLEATNLSCPVV
YWSDSAIVLHWIASCSSTWKVFVSNRIAEIQRLTQGMPWRHIPTHLNPADLISRGLLPSELVGCVLWEHGPEVIELPSSH
WPQNCIELSPLHMQARDDEARQTVSVLTTSSLEDRIQIQDHSALLPLLRSVSWIRRFTDNCRSRPEERRNGFLKFREIDD
TLKLLITLTQRTHFAQEIKHLLKNPGPVRKDFDLKSQIKTLNPFIDPEGLLRVHGRLENSSLPFDTKYPIILPAKAHLTH
LIAKNTHWDTLHSGPQLLLSTLRQRYWPVRGRDVARRVVNECLDCFHCKPRSIDQMMGPLPAARLVPSRAFASSGVDYCG
PFAVRPPNRRGASVKVFVAIVVCMWSKAVHIDMVYDLTSASFINVLKRLVGRRGRVTDLYCDNARTFVGANRHLEELRRA
FDAMHSSDAVAAHCAEKGITFHFNPARSPHHGGLWEAAVKSFKHHLYRVMKDTLLTIDDFNTLIVQIEGVLNSRPLTPLS
SDPTDVVALTPGHFLVGEPLFSIPEPDLCDISINRLNSFQKMQQKLQHFWRAWSRDYIGHLQNRKKWPVVRPNIEVDTMV
LLKQDNAPPMRWKLGRIEAVFPGKDGLVRVVDVRTAHGTYRRAITEVCPLPIEQPSEEPSEQPSDLPTDAAVQPSH
>BEL-11_DWil#LTR/Pao 69-5948 via tfasty with BEL-3_CQ, 1 stopcodon. [Drosophila willistoni]
MWSWPKVVEKKLEALKSQELRDVHFAIYTKFVRDNFVKRELRKFKGLPYDSKKRLEHIDCISKELGANALQRVCQFLEIS
PQEGIDCTEMASKIYDAISYETSGKSSNVIQASNANQSENQFENMNQLEVLRGIEAIDVENVELQDEISKKEILMLGVKR
QLSKAQTGGASADVIEEHEYEIQQLSLEVKVLNARAEALVSKKHTLNTTVALIRSSTSSQKSVMSDGDHPTNESLSISNG
DNNIQSTVITMLARQSLGNKNLEFDGSSHLAWRHFKTQFIKSGSECQYSGEEDLYRLDKSLKGAARKKVDILLMSAKEPL
KILAILDNIYGAPENVAFELMAKAQEIKYVKEIGDFHEFNCSVQNINSALEFVQCKFIDIQKLLATLIERLDESFLREWG
SFLTARKLRAAEWNFEIFAEWTQEQSRLYHDICFYKKIITINNVDNEAQKKFGSQIQPQKVTQTRSTSKCFICDEDKHSL
DKCSKFRKAEVKKRWDYASTSNACFTCLKFHKGQCNNREQCKIDNCERYHHRLLHKAKQPHLQSLPQAFSGCIQEVQEAA
ILKMLPVILRGPTGEKEILAFLDDGSTTTMLDINVAREVGIIGKPEPYCFGWTEGISRYDETSEIADISITGDSKIQKLQ
NVRLIKDLNLPTQRIDYEAIQKEFPYTKMTKLNSIRNVQPHLLIGQRHATLLTTQTILNVDPKGPIMAKTKLGWVIHGPI
KAKVREADFVCCHIEDEHLGDMLKNQFSIEGFGVCKPATDKTKSTEEKLAISKISSSIIRVNGQYQVNLPWKSDMVELPD
SRQMAEQRLKCLERKLNRNSELARAYQKEVEKLLKNGYAKIVTNVNLVKSPKLWFLPHFAVINPKKPGKVRVVFDAAAIC
NGTSLNENLLTGPDWLSSIVGVLIRFRLNTIAFAADIKEMFNQVKIAKEDAVSQCFLWRNMNTQIPPTVYQMTSMIFGAT
SSPFIAQFVKNHNAAIHKNEAPEAAQAIIENHYVDDYLDSKATVREAVEIIHAVIKIHAAGHFQIRNFICNNHDVLQGIP
EDLRGPLTRIRLGEKGDISQKVLGMIWDAQKDIFIFSTTTMHSISEDILNGTRMPTKRKVLAAVNSIYDPLGMVTPVTIK
GRILMRSIWELGIGWDDVIKGDPVKKWQEWLNDLKRLHDVSIPRCYSQYLSIATKVELHVFCDASSKAYAAAAYIRVSYK
DAEAATKYDVMLIASRARVSPLKHVTIPKLETLAAVMGCRLAETIENEMHLKFDKRFFWTDSLTVISWINSNERLQVFVE
AYAAAAYIRVSYKDAEAATKYDVMLIASRARVLPLKHVTIPKLETLAAVMGCRLAETIENEMHLKFDKRFFWTDSLTVIS
WINSNERLQVFVANRISEICEKSKRAEWNWVPTMENIADIITRDSPIKVATDRWQQGPASLGLDKKMWPQPKLKAPTEPG
LMMLVHQDDHPFKILENRISKFTKLVRATAWVKRFIENVKAKRCKMELRRGDIVVEEYNWSLSKWxLHVQAECFHNDIIY
AKTGKITGGLRLTKYCLSMSEDEILRINSRIIRAEGVVATSPIVLDGDQVFTKLMVQHFHNEVQHNGIQVVVHKFKSQYW
MPKMNTKIKRIINECMWCRRRKAKPVKAQMGILPKERFSTFQKPFTSVGIDYFGPFYTKDGRGSSGRYNKCLRKRYGVLF
TCLTSRAIHAEIAHSLTTDSCILAIRRMMARRGEIKTLWSDNGTNLRGASRELTEALEEIDIQAARGELTQKGIEWKFIP
ANSPNFGGCWERLIGCFKRTLEAVLSVESNPTDEVLQTLFCEAEHLVNSRPYILESDDPDDGLGLCPNDIIIQQSGSIEA
PCKINGSSEKKTWRMTQMLVEAFWRRFIKEYIPSLVNRSKWEKNCDNLKEGELVVVKCMTPRGEWPIGIVLKTHPGEDGI
VRVADIKTTKNTYRRPLRNLCRLGLESRDIKDRAEDLVQH
>BEL-10_NV#LTR/Pao 18-5513  [Nematostella vectensis]
MEELQRLIASRRGHRSHLTKLMKKSEEIFTKDGGFTELELASAKNTTQQLEAKAGKLRDLDEIIAPKIEKPEDLEEEIME
TEEIQEGITDMIAKLSVIINNDNVPSVNTPSPVVPPSVASTSSPQSASSMSQNPTNIDPTQVVPPSNTTQVVPPPNITHP
SNQPFIPQASNFNSYSTRLPKLNLPVFSGDPLEWMTFWDSFNVAVHSKPGLPDVDKFNYLKAQVSGEAEQAIGGYLISGD
NYVKALATLKERFGQTHRVTNAHMTALLDLQYPTSNLESLRPFCDALETNIRALEALGKSQDSFGELLIPVILGKLPNET
KRNLARTQQGGDWTIQGLREALKHELKVLEAGSPLLSESTPTASFFTGVKGPHPQGKGKPKVIQCVYCKGKHSTHNCATV
SDPKARKDIVVKLRLCYNCLSSSHISSKCTSKFRCRQCGGKHHTTICERDKGQGPHPGNKEPPPQAEPSQSVHTTLAPAH
PYGITHEYPILLKTAVSHVRVGNTSREVNILLDEGAQRSFITKKLADELGAKPISRENISMSAFGATEHSLRRLEVTNVE
VISEQGDRIPLRVLVVPHIATPLQCKHHTDVSNMPHLKGLKLAHPVSSGNFEINLLIGADHYWDIVQDKIIRGEEGPTAM
QSKLGYLLSGPVRARGVQGNVTNIFHISAHQEDEFDLQQFWSLESMGISPNADPPEKNFLTNYQATSITRDEDGTYIAGF
QWKEEHAPLPTNFSICERRTRATARRLHQTPDLMKSYDDIIKEQEARGFIEKVSNPDPSDHAHYIPHHHVKKESSTTPIR
IVFDCSCHQAPSTPSLNDCLEVGSPYLADMGSILVRFRAHPIGISTDIEKAFLHVRLSEADRDMTRFLWLSDPGDPESEF
QTYRFKSVLFGSASSPFMLNAVLQTHLDNHKTPVTQDMRDNLYVDNIITGCETHQEALSYYDESRSVMTEAKFNLRSWAS
NSQPLLHRAALDGVNDANCDSVNVLGLRWDTSTDTLTLACKELLAPDDTLVTKREILRESSKIYDPLGLITPISIRAKIL
IQDLWKLNVDWDEPLNGEIRTRWLSIAQEIRQSTNLTIPRCYLSNRSANETTQLHVFVDASPKAYGAVAYIRQANQTSFV
MAKSRVAPVKELSLPRLELMAALAGANLAEYLLNSLQKNFPDLQAFFWSDSQIVLNWLHSNKQLQQFVGNRVREIKRLSQ
PSSWRYCPTRDNPADLLTRGLTTAELQASTAWLHGPSWITSECDWPTWESSTTLLVEIPEEEPKVTPEPDVLGEQTNSEA
DATSVENPSISTIMDPTRHSTLRKLLRVTALVLRFVHNLRNPTDRRNGPLMVTELTKAERTWIHDRQRHSYAKEIANLSA
HDKSGTPLTRQLRLFMDDDGLLRCGGRIHNAPVSETAKFPVLLPKKDYVTTLIICDTHERQLHAGVSSTLTALRQKFWVP
SGRFQVKRVLNKCVTCQKVNGAPYRAPDAPPLTSLRLRESRPFAVTGVDFTGELYIRNGKTDSKAYICLFTCAATRAVHL
EVVSDLSVKTFILAVRRFASRQSIPDVIISDNASTFQSAAAELEHLFNSPTLKQELGKQGIDWKFIPKRAPWYGGFWERL
IGLTKTTLKKVLGRASINLVTLQTVVMEIEAILNDRPLTYVSPDINDEDPLTPSHLLYGRRITSLPHPDTDADELTDPSY
GNDDHLRRDATRVALVIQHFWQRWKQEYLTSLRCFHGATGGSGETRVKIGDVVQIHSEKKRLKWKLGVVEDLIRGADGCV
RAVTLKTAKGHTNRPISKLYPLEITTDVVETADAQTGGQLQSNQPIRRSMRITAATRDRIADWARQLRAPPG
>BEL-5_DYa#LTR/Pao 514-5616  [Drosophila yakuba]
MSSLEQLKAQRTSARKNLTRMSKSVEPGLNLSPLELSCRLSILESYFKLALSTQEAIEQMEPAEAQRNTRFEIEELFIHA
KVCVQEQLGPDANSTGIHESTVNFGHTSAVKLPRLSLPTFDGKYCEYQNFILSFNQVIGHQPSMSKIEKFNQLLNCLRGP
ALETVRAFQVTADNYTKALDRLKQRYDNPTLVFLDNISSLFALPTVAKSNGQQLRSLIDNASALYNSLRSLSTEPQICEA
MLISIVMGKVDQETKRKWNESLDYTTLPSWDKCVGVVERHCQYLESDKKPPAEAPMSQPGGHRSRSQRNQASLSFNCTTQ
TCNICSQTDHKTFRCPELINLALDNRLNAVKRHKLCINCLGRGHLVANCPSTRRCHSCALPHHSLLHRPSPGSAAAPLPL
PQAEPVQVSDAVAHTHTESRSDCVILATALILVKDASGSYKIGRALLDSCSQVNFISEEFAQRLRLPRSKLNLEIRSIGE
TQTRIKHHATTNIKSRHNGFELLLDFCVTSHIAYHPESEIDISAWNLPQHSSLADESFNKSRRIDLLLGTETFFDILAVG
QVKLGKDLPVLQKTLLGWIVSGRCRAHPRTLHQYSSIALTEIDQKMERLWRIDHVEPPEITLTPEQRNCEEFYTKTVRRN
SDGRLEVRLPFKDEPTVLGASFDIAKRRFLSLERSLCKRPEVGAKYVEFMQEFQNLGHMSPVSHPQLNTPHYYIPHHCVL
KPNSTSTKLRVVFDASCKTTSQKSLNDILMVGPTIQPDLYTLLLRFRIHRYAITADVVKMFRQVNMFAEDRRFQYILWRA
SPSQPLSTFELNTVTYGTAAAPYLAIRSLSYLADKFMDKLEIGAKAIKSSFYVDDFLGGADTVEELHQIKREVTAILQDG
QLELAKWHSNHCKFVDDATVKHLQLDDEMLTSTLGLKWDQVRDTFMFSFSPRFDSDHVTKRSILSIASSLFDPLGLVTPI
IIVAKIILQELWLLKLHWDESVPQGIHTAWMSLLASLSSLESVAIPRYCLQSAIHTFQIHGFCDASIRAYGCCIYARTIG
SDGLTKVQLITSKSRVAPTKKLSLPKLELCGAHLLAQLYKKIIRIFADRKPTSFLWCDSQIVLHWNRQHSATLSTFVGNR
IAEIQELTSDCHWRHVPTHCNPADILSRGCTITELEQSIWFEGPEFLGQDHQHWPKDSRDNSDIDMETVQLEKRKSAFAV
HTTSNQLLEGIYKISSHHRCLLVIAWMYRFTQRCRKLTPFQSPSPTPAELMRALHCIVWNIQTIHFAQEMSSVLKGHPIR
TNLKNLSLFLQVTDGFQMLKVGGRLELADYPETQKHPVLLPAKDPFVSQFARHLHLQNYHAGPRTLVALIRKQFWIVNAR
DLARQVVRSCIHCRRYRPTLERQLMGQLPKERITPSRPFSRCGIDFCGPINVYLRIRGKPPTKAYLAVFVCFATKAIHVE
VVSDLTTDSFIASLKRFIARRGLPSDIFCDNATNFAGANNKLESLKQFLFKDETTKTIHYFCRSEFINFHFIPPRAPHFG
GIWEAAVKSVKGLLNRTLRDTRLTFEELATAAADVEAILNSRPLTPLSSDPNDLAALTPGHFLVGDALRALPELPPIDDN
LDKLDRWKRVSALKHHIWSRWSHEYINELQVRTTWTKTSPNLAVNDMVIVHEDNLPPQRWLLGRIVSTIAGADNIVRVAD
VRTAKGIIRRPIRKLALLPVS
>BEL-2_DVir#LTR/Pao 326-5467 via tfasty with BEL-3_DPer, 6 frameshifts. [Drosophila virilis]
MMQGENTDDMQSNRVSFLKRKAVALFERAKRIENELSEDKINNSCAVDLEVRLLLIEQTKSAFNTAHNSLEELNFDEIGS
KLRDDFDELIAMVEARVRVIFSVVNLTARPAQPFMLANRTRLPELKLPTFSGGYTEYSDFIAMFESVVDKDTELSNIERL
QHLRSCLSGPALDSVRSLEFSGANYPVALDILNRRFSNKRLVFQAHINEILGLKRVDSESASKLREFSDKVNSHMRALQN
LGSLEQISGCIIVHTLLQRLDTQTQTKWEEAAGIDKIPTADELFTFLERRSQRLESVQHAMSSHITNYQVGKSNHNTNHS
KRALVAETNQNGCSFCDASGHGIYTCSKFGNLSPSLRHKEVKKLALCYNCLRKGHQTRSCSSSRCRTCGGKHHTLLHFAT
SREADAPTPLHTSADLGAATSTHSHSTTSLAVQGLQSGVVLLATAVVLVKNSSGSLFPCRALLDSGSQLHMVTSRFAQRL
QLRKTRSSTVVMGLGDTSVSTEGSAVRINMKSQDSDYSATFDALVTPTITDSQPSFVIDTSDWKIPSNIRLADPAFNKPQ
RVDLLIGASLFYELLSVGQIVLLPGLPLLQKTRLGWVVTGGFERPRSTSLLAAGRTPNSEASQLDVRLDELVRRFWEIES
LEEPTVKATKEEAECEQHFANNFSRLPSGEYSVRLPLKRSAELLGESYGQAHLRFLSLERKLGRNSHLKEQYSAFIKEFL
DLNHMSRVSPELSGCCKYFLPHHCVLKEDSTTTKLRVVFDGSATTDSGHSLNDVLMAGPIIQPKLFHILIRFRTYPVALT
ADICKMYRCVRVTSPDSYFQCILWRDSPQKDIEIFKLDTVTYGTKSASFQSVRAMHQLAFDERDAFPIGSDAIKQEFYVD
DLISGADSVAEAREKIRQTAGILSRGNFKLRKWCSSHQEVLNGIAYEDREQYLKFDDGSDVTKALGLVWDPAIDQLLFSF
SVLDCTVKPCRRSVLSIVARFYDPLGLLGPVITKAKIFLQQLCKDKLTWDESLPIARDTTWRELCSSFRNIRHVSFPRVV
LFEGADVEIHGFCDASVEAYGACVYVVARSPLATSRILCSKSRVAPLKTLTVPKLELCGAKLLASLMHEVKRTGIFVSQF
YCWCDSSVVLSWIRDEPFKFNVFVANRVAAIQELTAGMEWRYVPTDRNPADILSRGTVPDVLAQSELWFHGPSYLLNGRL
NWPATCLPEAPTIELRKRVLILKSPHADLTLGCKHANSFGSMQRTFGYVYKFMKRIRHHGLTVADIHHGTLWDDIKEIHS
HGNVKKSSSVASLAPFLDERDLLRVGGRLNNSSLDYDAQHPIILPRRHAITLAVIVQFHERNLHPGPRALLAKIRLKYWP
IGGLRTVSKAVGRCVRCFRARPIFVEPMMASLPRERLEVVRAFAVTGVDYCGPFFYKSEVRTRPSIKCYVSVFICFTSKA
MHLELVKDLSTATFLSALKRFIATRGKPSQIWSDNATNFVGSKNELVDLKRLLLSDPHMEAVRQFCLADDIEWKFIPPVP
HFGGLWEAAVKSAKHHFYRSVGPLLTFEELRTLVCQITAIINSRPLLSLSENPADLDVLTPAHLLLGGPSSAIIEPDLTK
LNYDRLDGWQRVTQLQQVFWARWREEYLTLLQQRAKWTQTQALCINDMVLVKDENLPPMRWPLGRIVNLIPGKDGVNRVA
DMKTTAGIIRRAVNKLCLLPLKDSVESQASNGGS
>BEL31_DR#LTR/Pao 630-6704 [Danio rerio]
MADQEDCDIDAVELQLQVSPEDENCETSAQEPSTNEAAKEESLRKSQRVRKFTEKGQALHDEKVNKFQTHFKACYDEWKS
AAKQAKKALENPVSVTLHDHIAHVQYASSEVKQTYDKLRSYVTPDGDTRRRVDTCDAVSQKLIKLAEDWLVESGSVKDVA
KGSLRWSEAGSVFISAASQKSKSAGSTYSSSSRLSVKKQEAAAELAATEAALKVMEEMDRERNELENLEAENRQRLAIQE
AENAEKLKALEQKRRELERLETVKKMNAAKARLKVYEEEINSDEEISDLLHDNVKQRKAAPKPGSLPEPLLTPSKPTVKL
HQFSALPQTTRCQLPNNATQEDSTTALARALAESINISRLPVPEPAVFNGDPLKYKDWKMSFQTLIDRKNIPVNEKIYYL
RKYVGGPARRAVESYFLLGTDEAYYAAWDTLEERYGGSFVIAKAFRDKLNSWPKIGTKDSSELREFSDFLRGCEAAMLQI
KNLDVLNDCSENQKILSKLPDWLTARWNRKVIEIEEQHGSFPTFSNFVDFITREAKIACNPVTSLHALKGSDLEKVKPTK
TRSIGTKVLASAAEEKPNIQKCVFCDRLYHSIHTCRQFMDKSIMERVKFVQTKGLCFGCLNPGHHSKKCGKRSVCDTCKG
KHPTCLHEERDKQIRKNKEGIKDTKENKQSKEIPCETISHRVVQNNSSNLTSTISPVWLSTTNNPEHEILVYALLDSQSD
TTFILQEKADGLDADKKHVQLKLSTLSTRDSVIQSERLSGLQVRGFYSSKRILLPVTYTREFIPANLNHISTPKTARAWP
HLEHLAEEIAPPIECDVGLLIGYNCSQALLPREVVSGKDNEPFAQRTDLGWTIVGGADPCVDYGDAMGSSHRIIVKEVTP
KLSSDQLPNEVHYICRTQVKEIITPPDVIKVLESDFSERKVKESHFSQEDLRFLSIMEEGVRITADGHCELPLPFKEDRP
CLANNKSCAEHRLQCLKKRLERDKQYCNDYTTFMNETIERGDAKRVPLEELDKSSTWYLPHHGVYHPQKPGKIRVVFDCS
AKFKGVSLNDHLLTGPELTNTLIGVLCRFRKGPVAVMCDIERMFHQFRVRDEDQDYLRFLWWDNGDFHLSPSVYRMRVHL
FGAASSPACANFGLKYIAAQGRGQFSEATIRFIERNFYVDDGLISFHSEEEAIRLVHEAKKLCSIGKLRLHKFVSNSPQV
LESLPKEDCVETVRNQDLALGEQLIERALGVKWSVASDHFQFRVVVSERPFSRRGVLSTVASIYDPLGFVAPFVLLGKQI
LQQMCRDKSDWDTPLSNEHQSRWESWLTDLKDLAHVKIDRCYLPADFQEVQRYELHHFSDASVAGYGVCTYLRAVSRSGR
IHCSLVIAKSRVAPTKVTTVPRLELSAAVVAVRISDMLKGELELENVQEFFWTDSQVVLGYINNEARRFHVFVANRIQRI
KESTKPTQWKYVASEDNPADHASRGLKSKELIASNWFSGPSFLWEDSLPTGEIKVGDLDTDDPEVRKVLVHHTLTTENSL
AERFSKFSSWTKLVKAIARLIRFVKELKGSIKRTNKATSLEERQEAEHVVIAIEQGLVFSKEIKELHSKKELITKDRASR
LYRLNPFLDHKGILRVGGRLEHATLHPNVKHPFILPKTSHITKLLIDHYHQKVKHQGRGMTTNELRSNGIWILGCSQAVS
SFIYNCVKCRKFRRQTEEQKMANLPSERMETTPPFTYCGMDCFGPFYIKEGRRELKRYGLLFTCLCSRAVHIELLDDLST
DAFLNSLRAFIALRGNVRQLQSDQGTNFVGARREFLEAVKEMDQECLKQLGCEFVMNPPSASHMGGAWERQIRTIRSVLN
SILDQSSRTLDSSSLRTYLYEVMAIVNSRPITTQLLNDPTGPQPLTPNLLLTMKSSIILPPPGDFVKEDLYLRKRWRRVQ
YLANEFWQRWKKEYLLSLQQRQKWHKTNRNAKVNDIVIIQDDTTQRNDWKLAKVTAVYPSQDGCIRKVQLLISDSTLDNH
GRKLCKPVHLVRPIHKTVTLLEAD
>BEL-3_XT#LTR/Pao 53-6048 via tfasty with BEL35_DR. About 70 internal AA missing [Xenopus (silurana) tropicalis]
MSLRSGKKYIPDDEPPMRQHGREKASTQQDELRSHASKSSKSSKMSAASSLALKARAKAEATRVQLAFAEKEANVKREIA
EKQASMNREMAEAEAELKILQCQREAAAAAAEAAVYLETYSSESEGTHEGPEMLEKPLSPAERASEYVQRVSSMPTTERS
IKTEPAEVYRPKPAAVTSTPRQHYSASDVKPVRKYPAEYPRDRIQSFPLPQPKDCAPEQQCIQDITKYLLRKEAVNSSFI
KFDDSPENYWAWKSSFQNAIKDLNLSASETLDLMIKWLGTESAEHAKSMHRVHLFNPSAGLDMAWQRLEKKYGSPEVIQR
TLQKRLDAFPKLTNKDAKKLEQLGDLLLEIECAKEEGYLRGLTYLDNAIGLNPTVEKLPYHMQLKWASVGTKYKAETGED
FPPFFVFSRFVQQQAQMKNDPSFAFYSNRDQSPKPERPYRYHGKTSVSTHKTFVPTETSHSQTSNKEGSIESPDRQCPIH
QKPHPLKRCKGFRGKPIGERMYFLRQNGICFKCCETTKHIARDCKISVKCSECGSEKHIAALHPDLPAPPVETVRAGTDH
GRELSDSSPPPVMSKCTEICGTGKNFRSCSKICLVTVFPSGQRERAVKMYAVLDEQSNQSLAKSDFFNIFNIKTTVAPYT
LKTCAGVTETAGRRATNFIVNPCLVRSPNKPNLADLIDKPNMAALIxxxxxxxxxxPYAQRLELGWVIVGEVCLGSTHQT
NRVSTLRTSVLPNGRTTLLNPCQNRFTVKESFDNLTHFSDSSVCGQEDISFNPETDKLGTTVFQKSKNDDKQALSIEDQV
FLQIMDKDTYQDDSHSWVAPLPFRTPRCKLPSNREQAMVRLASLRRTLHGKPGMKRDFTEFIKKMLDNDHAEIARPLEQG
KEHWYLPMFGVYHPHKPDQIRVVFDSSAECEGVSLNNVLLSGPDLNNTLLGVLIRFRKEPIAFTADVQQMFYCFLVREDH
RDYLRFLWYKDHDIDKEVVEYRMRVHVFGNSPSPAVAIYCMRKAALTSAEQFGQDAKHFVLRHFYVDDGLASASTPEIAI
DILNNAKQMLAESNLRLHKIASNSTQVMNAFPANDRAKDLKDLCLGTDTLPLQKSLGLSWDLERDSFVFQVSSEEKPFTK
RGVLSTVNSLYDPLGFVAPVTIKGKALVRELSSKKCDWDALLPQEKLHEWLLWKESLQALEHIEIPRCYVSTPLSAVSRK
ELYVFSDASNTAIGAVAYLKTIDVCNKCSVGFVMGKSKLSPKPAHTIPRLELCAAVLAVELYELIRDEIDKDLDAVRFFT
DSKTVLGYICNTSRRFFLYVANRVNRIRQVTHPDQWAYVPTEQNPADYASRPTKTIHLQNSIWFSGPPFLYHTDREELGN
SEENYPLIRPEADPEIKPIVASFNTKASDTFLHSHVFERFSNWMSLCKTIARLIHIAKSFQKEPSNTHCRGWKCFPEKVN
SEEISQSKATIISSVQHEYFKKEYTCLSEHKALPKQSRLKKLSPFIDRNGLMRVGGRLSFGALTEQEKQPVIIPHDHHIA
KLIVKHYHNKVAHQGRHITEGAIRAEGFWILGGKRLISAVIYKCVICRKLRGRLESQKMADLPEDRVTPEPPFTSVGIDI
FGPWSVVTRRTRGGSADNKRWAVLFTCLSTRAVHIELIETMSASSFINSLRRFFSIRGPAKLLRSDRGTNFVGACKELDI
CIADSGVQDYLQNRGCTWIFNPPHSSHMGGAWERLIGVARRILDAMLLQDKYTRLTHETLSTFMAEVMAIMNARPLVPVS
SDPDNPMVLTPAMLLTQKVNSLSAPFGKFETTGLHVKQWKQVQNLADTFWKRWKREYLSNLQSRRKWTQNRPNIQVGDVV
LVKDSQESRNEWPVGLIINTLPSRDGRVRKVEVKIVKQGTAKTYTRPISDIVVLVSDNT
>BEL-4_DEu#LTR/Pao 482-5806  [Drosophila eugracilis]
MKAGSDTPTLEQLVNLQANRFQSVKSLLQNFKKDSQSRKTRIYLKKRLEQVEELRSAFRETDSVIVNLEGFSVSAYATKD
FQSEFEERYMDAYCAFAEELDKLGPEACAPPPPVSGGADAEVRLNMPQMSVPKFSGACVDWPGYYDAFTSLIHNNANLSS
VQKLHFLKESLPRDRDNDIRQMQLTEGNYSVAWGLMIKRYNNPRLVFAHHMNAIYALPRLQKDNTELIRSMLSTVNVCLA
AFRRVQALDGESQHWLAHYVASRLPKETHNAWEHHQGSCSTVPSYRELESFLNDRLVVMDAIENRGSSFDSAAGPGSSDP
TKRVRVHSAQEHARRPSGACYHCGGDHILRRCSTFLALDCYQRKDIVSRAKLCINCLSKAHALSRCTSNKGCQVCGQRHH
TLLHFPVLAHSQSPSGVPPHHVAPTPSAPADRDSVSQQRRQPTTDQNPGASYGCYSATSSDPSSRNVLLATARITVRNPV
NGLHAVINALVDQGSEATIVSEHVVQSLHLKRSGTRTSIFGMGLGGGRRCKYTVNFEIRSNVNPDFSVDVDSAYVLNSVT
SCLPCRSFMPQRWDHIRGLPLADPNFSRSKRVDLILGVDLLAQIMLPDTRIGLPGEPIAQNTHLGWILSGLADGVREATQ
VRCHRVLLDTEALLKRFCEVEAVPDRSLTSEGDLWCEAFFQKTHIRRSDGRYVVRLPFKTYMDPTMVLGRSHQMALNRFL
QLERRLSSSPERWSKYVEEIEEYFALKQIAPAVGSESSLLMRTSTGRHVASCVLPHHAVFKKEPQSLKQRIVFDASARTS
NGRSLNDVLWTGPALQNDMSHVILNWRKYRFVFAADIQKMYRCIDVHPEDAQYQRILWRAADGXISVFALSTLTFGTASA
PFTAIRVIQQLAKDERRSFPKAEEVLMSEIYVDDILSGGHTLEEARDKRTQVSGAIKSACMELRKWSSNESSLLLSIPAE
HQCSRTPLNWDTTDPIKALGMYWLPNKDCFKFQVNFEIPARFTKRMILSSIARLFDPLGLIAPVIIVGKLILKEVTMAKK
VHADGTQSALEWDDEVPDALVERWRTFRDGLTRIDDISIDRWIHYSPGCIVSAQLHAFCDGSSTSYAASVYLRLECEDGA
CYSSLLASKSRVTPTRPLTIPRTELSGAVLAVKLVKWLTSAKWLSDLPIESFYWTDATILLHWLYGDITRWKTFVANRVA
FILDHSSPSQWRHVGTAENPADCATRGLSPGELKGFGLWWRGPEWLTRSPSDWPSMEFEQVDTNDAALEAKAAKVRVHHA
VPLPSFVGRFSTFSRAVRVTAYALRFRHNAVGKGERRIGPLAIEELDFALGAIVRIVQRESFPMDLAAVRESKRLPARSK
LLSLSPILSEGILRVRGRLRHSNLPYERRHPIILPSSHHFTELVIRHSHVLTLHGGAQLTLAHTRQRFWIVTGRQAVRRV
VRKCVQCFRAQPSASAQLMGDLPLHRVNPPSRPFIATGVDYTGAIELKAARLRGTSFYKGYIAVFICLATKAVHLEAVTG
LTTEHFLLALDRFTGRRGMVQHLYSDNGTNFVGADNVMKKFYCKLQEDYDHLIAPKLASQRTTWHFNPPQSPNFGGLWEA
NVKSVKHHLKRVIADRRLTYEELTTVLISIEACLNSRPLCPLTADADDLEVLTPAHFLIGDSLHAPPELRPQSRSFAEQF
LIQQAMVRHFWKAWSRDWLAHLQQRPKWCREAEGLQLGDLVIIKDDRFPPSQWLLGRVVELHPGTDALVRVVTLKTKQGR
LKRSVSKLCPLPIRS
>BEL-4_DBp#LTR/Pao 93-5306  [Drosophila bipectinata]
MNAIMHRTIQQRGACKGQITRTLNSAVEFSQRCENVETLQFKLERLVATFNHFMELSDELVEFHLEEGYEDPGLDIPEYE
DKFYAAHAIFSNAIKDMGGQDHGQDQSNILLSSTVERLFEGQNNLLEKIHTSSGTADLRFEKIRIPTFSGKYEDWSQFSD
LFLSSVNSNEKLSKCQKFHYLKSYLEGEALSLIKHIAVCNDNYQDAWEKLENRYNKRSLIARSFVQNFLSLPTANNSNIA
ELRKVIDSADECIRGLHALNCDSRDVWLIHILLSKLGSEIKQAWANCSISATEDVTIDDLFAFLFAHCDTLESCQDLPAM
QPSRPAQSRRRQAAFHASGSTQSSRECIYCQGQHSIYSCNEFKALDVVSRRTFAKDTKLCFNCLSRSHQVRDCNSSNTCR
QCNAKHHTLVHPIEARSVPVAPAHSTAADTNTAAVSHHILERANNPALLPTVVANVIDTWGNETSCRLLLDTGSTITMVS
ESFIQRIGIPRTHARISVVGLGANPAGVSRGRASFTLLSRTTTASLEVSCLIMSSLTSTIPAQQVKSNATIWTKIRSLPL
ADPTFGSPGKIDVILGADQLWNLYTGHRREFGIEYPIALHTNFGWVITGSYTDGNKASTHAQVHHAYEDLDSLVRSFMDM
EQVHPSKTTIDASDPAEQHFLKTHARREDGVYIVQYPFKEPRTPIGSTLPQALNRFAALERKFRRFPALKQQYVDFMDDY
LNRGHMELIPAAAGGEDPARYNYLAHHAVFKPDSTTTRCRVVFDGSGKDSTGHSLNSRLHIGPPIQRDLIGVCLRFRQHR
YVFCADIEKMFRGILVSDEHTQYQRIVWRKDENATLDHYRLLTVTYGLASSPFIAVRVLKQLSNDYAELYPTAAVVLNRD
AYVDDIPTGCDNIKDLIALKDELILLLSEAQFKLRKWSSNCYALLKSLPKEICEYPPEDLEEDRSFRFVKVLGLCWEPKP
DYIFFKLETPAFTTALTKRILLSELAKIYDPLGLLSPTVVFLKILFQDSWLSSVDWNEVLPQQLCTRWQQFVSEMHLLET
CRVPRYISAPHQEMELHGFADASSQAYAAVIYSRVEVNNGYAVKLIMAKTRVAPIKPISIPRLELNAAHLLSKLIYLVKQ
SLTVPISRINCWSDSEIVLHWLSSPPRTWNTYVCNRTAEILEVCPRSCWQHIRSGDNPADCASRGVLPKDLVDHQIWWNG
PPWLSQSRSAWPPVKAKFVLSTEEEACLEMKAETKVNLHISDDGNSLSCMINKSSSWSRLLRIVSYCLRFVHRLRERNRL
SPFLSAWELQYARAKIFTHAQEEFFNVEYKQLTTGQPLSKKSKLIRYTPFLDEQRVMRVGGRIDNSIATYDAKHPILLPK
ESPIAGLLVRYQHAALLHAGVEYTFHSLRQRYWILGARNLVRKTVFNCRTCFLQRRHTSSQLMADLPEFRVQPARCFLHT
GLDYAGPVSIKTSTGRTPRFGKAWFAIFVCLSTKAIHIELVSDLTTSAFIAAFKRFWSRRGPISDLYSDNGTTFHGAKRD
LAEMQRMAIAQSQDEEISSFMASHEINWHFIPPSAPHFGGIWETGVRSIKLHLKRVIGSSALTFEEYSTLLIQIEGLLNS
RPLCAPSDHSLNPLTPSHFLTGQPLTSVPEPSFLDVNINRLQRWRQLQAKVQGFWKRWNLEYLSTLQPRTKWHQDAPNVA
VDTLVVLKEPNQPPSKWMLGRVTEVHPGQDQRVRVVTVKTAKGIYKRPITKIAVLPLN
>GB:AAC47271 protease, reverse transcriptase and RNase H (Gypsy_Ty3-element) [Tribolium castaneum]
NITKLQEFGKRGRSTGRGLKYSGQQHGPQSDSRNQQLRTGEKRKRSTSSQSTEGENDARPRASQVKLNVFSIIKSRAAGN
NNIQRVVPEIKIQISQQQSVTALLDTGSEVSCISEEVWSKLIETGNKPPTLPVTSIHLRGAIGQRSCQVVIQCYLEIKID
EHLYPVVALVVKNLIKPTILGADWLNEQRAVIDFDNNEILLRNGEKHHSFPFRKTTEIPPEPEDYVEDLVGHIEVNHSAP
ITTCNKKQHLESPSALQAKVDPLKIPEAEKRKLIHLLQEYRCIFSLRPGLTHKYTHEIKLHDKTPFLKRPYPVPFALRPA
VDATIQEMLDLGVIKREASPYASPMTVGKKKDGTVRICLDARMINSKMIADCESPPAADELLRRFHEIRYMSTIDLRSSY
WQIPLSPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTEVREFVVNYIDDLLVASETLNEHLEHLRQVFE
KLKQARMTINLEKSNFIQKEVKFLGHILTINGIKADPEKISAIRNFPVPQKTKHVRAFLGLCNFYRKFCARYSAATQDLN
KLLRKGEKWRWGRNEQEAFDRVKDLFLEAVLLRYPDLNKIFYVQTDSSGYGLGAELYQIQEDGSRGVIAFASRSLRGPEL
NYTTTEKELLGVIFALHKFRIYIQVTKIIIRTDHQALKFLSRCRLLSERLTRWTLILGQYDYEIELVKGKGM
>GB:S70430 hypothetical protein 4 (Gypsy_Ty3-element) retrotransposon mgd1 [Drosophila melanogaster]
MSTNSWVTLLIDTGAEISLLKCRNNNLNDLNPKNTTNISGIGQGTIQSLGTLHLEMCIANAAIPYEFHIVPNNFPIPGDG
IIGLDFIKKYNCILEFHDQEDWFTLRPKNFRNINIPIIHTLDNEIILPARSEVIRKIQLTSTDTHVLIPNQELQPSIIIA
SALVNTQNVLIRIINTTEKDAIVSSANIKSESLDDYDVYNANIENSAQRTSEVLKLLKFPSLFKSDLTKLCTEYSDIFGL
ETETISANNFYKQKLRLNDKTPVYIKNYRMPESQKPEIQRQVDKLIKDGIVEQSISEYNSPLLLVPKKSLPNSEEKRWRL
VVDYRQINKKLLADKFPLPRIEDILDQLGRAKYFSCLDLMSGFHQIELDERSRNITSFSTSTGAYRYTRLPFGLKIAPNS
FQRMMTLAFSGLTPSQAFLYMDDLVVIGCSEKHMLKNLTDVFKLCRQHNLKLHPEKCTFFMKEVTYLGHKCTDKGILPDD
SKYEVIKNYPKPVNADEARRFVAFCNYYRRFIKNFSEKSRHLTRLCKKNVPFEWTSECNDVFEYLKRKLMKPTLLQYPDF
SKQFCITTDASKQACGAVLSQDHNGQQLPVAYASRSFTKGESNKSTTEQELAAIHWAINHFRPYVYGRHFLVQSDHRPLS
YLFSMRNPSSKLTRMRLDLEEFEFTVEYLKGKDNHVADALFRITIGELKAINRQILKVTTRSTTRQKNTCAGEKLHEPNE
KENIKMPNIYQVINNIDAKKYVILKIDKHKCLLKRGKQIITRFDMTNFYSNEIIDLDQFFQRLNEEARINSIIQTQLSPS
EQIFEFVTIKNFKEKGNKILKNLKIALLNKVTKIDKNDKVQIKAILSKYHDDPSEGGHSGISRTLRKMKNCCCWPRMTKA
ISEYVETCLKCQQAKTTKHTKTPLTITETPATAFDKVLIDTIGPLPRSENGNEYAVTIICDLTKYLVTVPIPNKSAKSVA
KAIFENFILKYGPMKTITTDMGTEYKNQIIDDLCKYMKIKNITSTAHHHQTLGTVERSHRTFNEYVRSYISVDKTDWDIW
IQYFTYCFNTTPSVVHEYCPYELVFGRLPRQFIDFNRIDRIDPIYNMDDYSKEVKLRLEIAYRRAKNMLDKAKADRKIKY
DRNISNFELKIGDKILLKNETGHKLDNNYLGPYLVSEIGDNDNITIIGNKNKKQIVHKDRLKIFNS
>GB:AAC47272 integrase (Gypsy_Ty3-element) [Tribolium castaneum]
TPNSMDFDTRTVRLRNRVGKRKGNVVADILSRYPSDGEASYEYPREQPIVAMFEVNNTPEILQLMSDLKQHQSDDPVLSQ
IIANKQSGAAAPDARTQRVWSQYNFTNNVLVHRSQNSNDVCLAIPESLVIKLVDYHHQLLGHFGATKVYNSMKREYYWPN
MYRTIKKRLRSCDLCQKTKSSNRPHQGPLTPILYDHIGDLVCVDFYGPLPTGRLGASYVFVVIDVFSKFLKLYPLRKATA
KIAAKRLIEDFSGYIKPKCVLSDHGTQFISNTWQNSLRAADIQPTLSSIRHPESNPSERVMRELGRIFRAYCRENHASWV
NHLSNIEDCLNYVPHISTGFSPYEILYGRTPPNPLDAVTSGLLPVRPPLTREEIHEKARENLKHHANLRQKNQKGEVTVL
EIEDWVLLKNKVTSDTRTHQFAKFMPLYSGPYKIIAKPHPNTYQIADPVTNEIKGVYNMTNLKFYHRRDD
>GB:CAA31997 polyprotein (Ty1_Copia-element) [Drosophila melanogaster]
MDKAKRNIKPFDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEYLSDSFLNFATSDITARQI
LENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIE
TLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGH
IKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAV
AKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSENQLADIFT
KPLPAARFVELRDKLGLLQDDQSNAE
>GB:AAA35183 ORF1 (Gypsy_Ty3-element) [Saccharomyces cerevisiae]
LFKRTIEKPNLATPHPSMSFMDQIPGGGNYPKLPVECLPNFPIQPSLTFRGRNDSHKLKNFISEIMLNMSMISWPNDASR
IVYCRRHLLNPAAQWANDFVQEQGILEITFDTFIQGLYQHFYKPPDINKIFNAITQLSEAKLGIERLNQRFRKIWDRMPP
DFMTEKAAIMTYTRLLTKETYNIVRMHKPETLKDAMEEAYQTTALTERFFPGFELDADGDTIIGATTHLQEEYDSDYDSE
DNLTQNRYVHTVRTRRSYNKPMSNHRNRRNNNASREECIKNRLCFYCKKEGHRLNECRARKASSNRS
>GB:S08405 ORF2 (Gypsy_Ty3-element) silkworm transposon mag [Bombyx mori]
EPGGGSRGFSTHRAPGEPGCRRQQAIVARAASAGRGGRERAPLHLLYDQNNDDTYNNFNNEQDGCGEENEPMYQMTLSNY
KPVCIKVKVQNCLLKMEVDTGSALSCISKNVYDKYFSKEKLQACLLNLKFYDGSIIRPLGFINTIVKYQGVSKMLDLYVI
DKGTTNLLGRQWLAELNINIKISKPTSFKIQHSNFVTEHARDYNKLINEIVSRHKSLFDGTLGKYTGGTAELIVRPDAVP
IYCRARPVPYALRERVDAELDAMLAAGVIKPVDHSDWATPLVVVRKADGGLRICADYKVTLNKVLAIDRFPVPKMEDLFS
NLSGNKFFTKLDLSQAYNQIVLSERSSEYTVINTHRGLFKYSRLVYGLASSPGIFQKLMVNMFKNVPNVVVFYDDILIRN
QDLDSHLKSIKEVLDILERYGLKIKRSKCEFMVTEVRYLGFIIDQNGVRVDPEKVKSIATMPHPNNVTELKSFIGMVNFY
SKFIQDLSAHLSPLYALLKKGKHWMWGNEQNAAFLNVKKFLCSTKALAHFDMSLESVLTVDASARGLGAVLAQRGPGCQE
RVVAYASRALTTHELHYSQIHKEALAIVFAVEKFHQYLYGRKFILRTDHKPLVSIFGPNIGIPSAAASRLQRWAIKLSAY
DFEIEYVRTDKNVADALSRLIESQKNDVASEETDLPEQTYLHFSTEALLIDYNVLKKQTSSDPILSRVLSYLRDGWPLDI
EINELKPYYNRKNELYIELGCIMWGHRVVIPSSCRNKIITELHDPHMGIVKTKSLARSYVWWPGIDEALETECRACTVCA
AVADAPSTHAPRSWPWPSRPWSRLHLDFLGPIGGVTYLVVVDSCSKWIEAIKMQRTTAQAVISVLRDLWSKFGLPKQTVS
DNGPPFSSSDFQKFLIHNGIKHIYSAPYHPASNGAAENAVKICKRAIKKALKQNLNVDTALCRFLLAYRNTEHATTGDSP
ANILQGRSLRMRLDNLKPERQSRVIAQQERSEQNAGGVQRQLEPGTKVWYRDYRGLDKWVPGTILKQLGSRDYCVRSSFG
TENHRHVDQLKLRVTKNIDKVDTFASIRKNISPELIAQNLDLRTQSRKFRLSFPMTSGEEPVAVVNDSGKSSSPPKNSTP
AQDAVSPIRGSPMRPAVPIDKGACNTGGKSINENVTPKRERPVRIRKPPVRYGFEEID
>GB:AAF36671 pol protein (Gypsy_Ty3-element) [Drosophila melanogaster]GB:AAF36671 pol protein (Gypsy_Ty3-element) [Drosophila melanogaster]
MGNKIKIRKLCRFPCFQEFEAEGYICEFLEYNFHNYFDGLIGCNILNDLHAVIDYSNKKIQLNNVYLDLLVQENHLDLGI
HNLIPMNLICPQARSSINELIQKFEHIFYKEGQDLSFTSEIKHRIITKNDLPIYSKTYKYPEIHKDEVNRQIAEMLDQGI
IRHSKSPYNSPLWVVQKKMDQSNKQKWRLVVDYRKLNKETIEDRFPIPNIDEIFDKLGDCKIFSTLDLAKGFYQIEMDNK
DVHKTAFSTTSGHYEFLRMPFGLRNAPSTFQRLMNNILSPYTGQFCIVYMDDILIFSKNIGEHVNHLSCIFSCLSKANLK
LQSDKCEFAREEIEFLGHTINSEGLKPSQKKIDAICKINLPTNQKQIKSFLGITGYLRRYIKDYSKIAQPLIKYLKKNSK
INTHDQXYVEAFQKLKILITSDPIVVYPDFNKQFTIVTDASNYALGAVLMQDNKVISYASRSLKNHELNYSTIEKELLAI
YWSTKFFKYYIYGRKFIIKTDHRPLVWLNNLKEPNLKLQRWKVQLNEFDFDITFIKGKENALADGLSRIVKASTEEYDKN
AQTNIEINNLDIFMLENTNTLPEVTPKTKIINEDFSKDLIHIFANDIDDLETIHSADSDDLNFISITTNCLNVFKIQIQI
IEAESDLSTFKILHNKKIRHIFKSSGNQENMLKFMQEKLPEKGLVVIFCENLSLFVKFQEIYRQYFSSNKNLRILKSGTL
LEDINDKEKLLKIIENEHIKNNHRGINEIFISIREKYYYPKMQKFIQNYINNCKICNLAKYDRQPIKYNFNITETPDKIN
DIIHIDIWYPKRNIMYVTSIDKMSKYATAQHIKDRSWISLLNAIKLRIQYLGKPKKIVTDNEFDIVVIKQFLLENNIDIH
FTTPYKKTGNSDVERLHLTLNEHMRLYNADPNNFDTIQENVYKAIVCYNNTIHSTTNIRPIDLFNNILCHEDISKLSEKL
VRNKQTLNAKQDNINESNFSNIFVKNNQVGKSNPKYKEISNYTQYGNYLINNKDNKRKIYKDQVKRKYKYQNEDCET
>GB:AAA88791 pol polyprotein (gypsy_Ty3-element) [Fusarium oxysporum]
RRKSRHHPRPRGRKDGSCLSTKISHPERMSRRHQLHQERMQHGSPMGKRHAPSVTERQIGEKSEAKLPKKALRMATKGRQ
RTCLELKVRIKGKWLSALVDSGADMNFISPTTVNELRLPWKDKNDPYTVHDGQGETYLYENGNITREIDHLKVFVNGKNQ
GIDFDIIPVWRYDLVLGYPWLLRYNPQFNWRTGQVDCEDHPSDDESDSGYDTRSRTSTEESSEDRSGKVPPIPKGTRHKY
HKGKVKCIRRTIASLKGQFKQLDQDIKQMKQIAAKESDERLKNIPPEYRIYEKLFQEELDTKLPQHTDYDIEIVLKDGKN
PKFFPIYNLSQDELGTLREWINDMIRKGYIRPSKSSAGFPVMFVPKPNSNKLRLVVDYRQLNEITEKDRTSLPLITELKD
RLFGKKWFTALDLKSAYNLIRIKEADEWKTAFRTKYGLFEYLVMPFGLTNAPAVFQRMITNVLREYLDIFVVCYLDDILI
FSDTEEEHTEHVHKVLKALQDANMLVEPTKSHFHQSQVTYLGHEISHNEIRMDRRKIAAVAEWKVPTSVKETQSFLGFAN
YYRRFIKDFSKTAIPLTEITKKDKQFQWNDKAQEAFEKLKSAITSEPVLVMFDPDRQVELETDASDFALGGQIGQRDDNG
VLHPIAFYSHKMHGAELNYPIYDKEFLAIVNCFKEFRHYLRGSKHPVKVFTDHKNIAYFATTQELNRRQLRYAEYLCEFD
FTIAHCKGTDNGRADAISRRPDFDTGTVKTKEQLLETNSKGEYQFTQPVKTIALTRKGITEEEKQRYIGFKKYISMQQLK
EHHRDMHEKPEEASASHLSWYFGSGRDERIRQIMDKCPTCKQKPQGWRYPIQSLTDQDEQERVEQEFIYEIHAHPLHGHQ
GVTKTMKRLQELGYRHFKKGQVEKVIKQCDLCAKTKAQRHKPYGQLQPLPVAQRPWDSITMDFITKLPLSEEPSTGIFYD
SIMVIVDRLTKFSYYLPYREATDAEELSYVFYRHIVSIHGLPTEILSDRGPTFAATFWQSLMARLGLNHRLTTAFRPQVD
GQTERMNQVLEQYLRCYINYEQNDWVEKLPIAQLAYNTAYNESTKLTPAYANFGFTPNAYHNARPEKSINPAAIIKSEDM
QDLHEYLKTELEFVRKRMKNYYDPKRLKGPTFSEGDMVYLATKNIKTDRPSHKLDYKFIGPYKVLQKISENNYKLDLPPK
VRLHPIFHVSLLESAADTIQVKTGNEPREISGPEVYEAEAIRDTRKINGQREYLIKWKNYPENENTWEPPKHLVNAQRLL
KDFHQRARKKERRPK
>GB:CAB57796 ORF2 (Gypsy_Ty3-element) [Drosophila melanogaster]
TKRKFSVNSSGKYEYIKIVYKGRSYKCLLDTGSTINMINENIFCLPIQNSRCEVLTSNGPITLNDLIMLPRNSIFKKTEP
FYVHRFSNNYDMLIGRKLLKNAQSVINYKNDTVTLFDQTYKLITSESERNQNLYIQRTPESIASSDQESIKKLDFSQFRL
DHLNQEETFKLKGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNS
PYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTA
FSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC
EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKL
EYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKT
FRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIEENHHSEATQHSAEE
DNSNLIHLTEKPINYFKKQIIFIKSDKNKVEHSKIFGNSITTIQYDVMTLEKAKQILLDHFIHRNITIYIESDVDFEIVQ
RAHIEIVNTTYTKVIRSLFLLKNVGSYAEFKEIILQSHEKLLHPGIQKMTKLFKENHFFPNSQLLIQNIINECNICNLAK
TEHRNTKMPLKITPNPEHCREKFVVDIYSSEGKHYISCIDIYSKFATLEQIKTKDWIECRNALMRIFNQLGKPKLLKADR
DGAFSSLALKRWLEEEEVELQLNTAKNGVADVERLHKTINEKIRIINSSDDEEVKLSKIETILYTYNQKIKHDTTGQRPA
QIFLYAGHPILDTQKIKEKKIEKINEDRREFNIDTNYRKGPLQKGKLENPFKPTKNVEQTDPDHYKITNRNRVTHYYKTQ
FKKQKKNNKLSISQAPGTR
>GB:BAA89272 Pol (Gypsy_Ty3-element) [Alternaria alternata]
GPVKQRLGKRGALSQSLGLEPLKMDRKTHSEWSQFQEKHMRTPPITVDLIINNVANAQALVDSGCLCYSLVNKKFAYRHR
LERFQIPVRIIEGVNGKLSEINEVARFSFKLHGHEETAYAYVMDLSFGEDIYLGRGWMNHNNVSVAPAKKSIFIHSTGVR
VRSTEGISKQKIRQVNAAAFSALIHRHRRAPNSVQIFAASIADIDKALQPKKRVDVRALLPEQYQEYYGLFDPKAAEKLP
PHRGPGVDHSIELELKDSQPPWGPLYSMSRGELLVLRKELTSLLEKGFIRVSSSPAAAPVLFAKKPGGGLRLCIDYRALN
AITKKDRYPLPLIRETLNNLSKAKWFTKLDVIAAFHKIRVAEGDEWKTAFRTRFGLFEWLVTPFGMANSPSTFQRYINWT
LREFLDDFCSAYLDDVLIYTDGSLKQHQEHVRKVLRKLQDAGLQVDIKKCEFEVKSTKYLGFIIKAGKGISMDPAKVAAI
REWEAPQTVKGVRSFLGFANFYRKFIKNFSQLAAPLTRLTGDVSFRWGPEEQSAFDKLKEIFVSEPTLASFDPERETVLE
TDSSGFAVGGVLSQYGDDGVLRPCAYFSRKNNAHECNYEIHDKELLAVVRCLEEWDSELRSVERFKVITDHKNLEYFMKP
RMLNERQIRWSLLLGRYNMELLYRPGKQNVRADALSRREQDLPVGADDERLQKRFVQILKPTNSYCEELEEEDLVGAILV
MATRMTTVPPTKQGSVQPSTEETTAEQNELEKLWQEAVSRDRVYQGAKKTIKAQERRFPLSLGLKCSTEDCSVEGNLLLY
RGRKWVPDSEKLRTQIISGAHDSLATGHPGREVTYKILARDYFWPGMTQTIRRYVRNCSTCGRSKSWREGKQGLLKPLPI
PAQIWKEISMDFVEGLPESEGMTNLMVITDRLSKGTIFVPLPNIKTDTVVQKFIERVVAYHWLPDAITSDRGRQFVSVLW
TKLCELLKINRRLSTAYHPQTDGATERMNSVWETYIRSFTNWAQNDWALLCPMAQIAINGRTATSTSMSPFFLQHGYEVN
PLQIEPEVGSRASNQTEGLSDVQKAQVIASKLQQAIELAQASMAESQQEQERQANKTRREAQNFRVGDKVWLKLDQQYST
GRSSKKLDWKNAKYTVIRVVDSHSVELDTPPGPHPVFHVDRLKLASTDPLPSQDQDDSQPQPLQVDGEDEWEIEDIVAEE
VRRRGRGRKLYYEVKWKGFHQTTLEPAELLKDAEAVDRWEAFTEAERDGEGRLPEGFRRGDVVSP
>GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) [Lilium henryi]
MVRENDSRSSTGGNVVDPFAQLLAVLQNMTNILHQQAAISHQAEQSARQGESRPRLIKEFKGLNPPIFKGDPDPLEAHRW
IRHVTKILDTLGVTDEQKVILASFQLQGEAEFWWDAKVRSREDDTTQIKWDEFVEVFTEKFFPDTVRDDLERFMTLVQGS
LTVAQYEAKFEELSRYAPYQVDINIRKVKRFEQGLKLSITKQLSSHLIKDYREVITRALSVEKREQREAQIMAKRSKKNR
GHNHPYTRKEPHRQSNDKSQCPNPLSPGKVCYSYGQPGHFKSNYLTLMAPPQQHPPPYRPPQNQPRPPQHQGEGPRVTRV
NALIAQDPGVSGTMIRSILSIFSSLCHVLIDTGSTHSFITPRIIKMLEIPVQPLGYILSVISPIGTSTFVNQVCKGCMIT
IGNQELTVDLIILDLEDPDILLGMDWLAAYHVVLDCFSKKVTFHLPGIPEFHFHGETQHTFFPTFTHQPNLSYLASLASE
INITPSTDLSLIVREYINVFPDDLPGLPPPREIEFQINLLPGTSPISITPYHMAPSELQELKEQLEDLLNKGFIRGSTSP
WGAHVLFDPKKDDSKRMCIDYKLNSVTVKNKYPLPRIDDLFDQLNGAYFSKIDLRFRYHQLRIRADIPKTAFRTRYGHYE
FLVMPFGLTNVPTAFMNLMNRVFREYLDKFIVVFVDYVLIYSRTQKDHEHHLRISLQLLRNNQLYAKLSKCEFWMEKVKF
LGHVVSREGIVVDPVKVKAVMNWELPKNIFEIRSFLGLAGYYRRFIKGFSKLAALMTQLTKKGENFNWTKKYQNSFDELK
RLTTVPVLTIPISGPFVVYTDASLAGLEGVLMQDGRVVAYASRQLKVHENNYPTHDLELAVVIFILKLWRHYLYGEDFEL
YCDHKSLKYISTQKDLNLRQRWIEVLKDFDFSIFYHPGKANVVADALSRKSQISHLISARHEFFVTIEGFNLLVRYDSHH
TVLCNLRAKPNLINVISDAQRFDSELEAIHENIIQGKQDKDWTIDRDNAVRFGRLVVPLDQDIRTKVLEESHRSKFTIHP
GSTKMYRNLKINFWWSGIKREVVEYVSRCLICQQVKADHHHHSGLLQPLPVSEKWEHILMDFIIGFPLSKRCHDSIWVIV
DRFTKSAHFIPIHTTISGKDLALYIKEIIRLHGIPTTIVTDRDTKFTSRFWGSLKSLGTELFFSTAFHPQTDGSERTIQI
LEDMLRSCSLDFKGNWEEHLPLVEFAYNNSYQSSIGMAPFEALYGRPCRSPTCWAEIGEHHLIRPELIQQTTNAIEVIKR
RLKAAQDRQKSYTDIRRHPLEFSVGNHIFLEVSPRKGTSYFVFKGKLSPRYTGPFEILEIIWPVAYRLALPPMLSSIHNV
FHISMLRKYEPDPSHILDWEDLRLNPDISYEEKPVQVLASESKVLRNKIILMVKVLWQHHSEEEATWELEADMQEFPNLF
SGM
>GB:BAA78423 polyprotein (Ty1_Copia-element) [Arabidopsis thaliana]GB:BAA78423 polyprotein (Ty1_Copia-element) [Arabidopsis thaliana]GB:BAA78423 polyprotein (Ty1_Copia-element) [Arabidopsis thaliana]gi|4996361|dbj|BAA78423.1| polyprotein [Arabidopsis thaliana] (Ty1_Copia-element)
MRSSMGMNSLVFSMALQPCRLRPLAQMRLPVSIPTTLAGKDKTSSSTVPFLEPSPCRFNRRCQEPLPLLRSGKISETPTK
TQANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPT
LTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTTNNNNGNRNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPY
LGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYT
GGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQG
KTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQ
STINSTRPLEYIYSDVWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGG
EFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPF
QKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYL
ATLSPVQEQRRESSCVWSPHTTLPTRTPGLPAPSGSDPHHAATPPSSPSAPFRNSQVSSSNRESYFSSSFPSSPEPTAPR
QNGPQPKTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQI
VNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHV
TIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTL
TDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDIL
ITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYS
GTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDA
DWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGA
TYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRVPPS
>GB:BAA76304 endonuclease and reverse transcriptase-element protein (LINE-like) [Bombyx mori]
MAYKSRLKPLSVTIGFFNAYGLANQRDQVCDFLRDHQIDIFLVQETLLKPARRDPKIANYNMVRNDRRTARGGGTVIYYR
RALHCIPLDPPALVNIEASVCRISLTGHAPIVIASVYLPPEKIVLSSDIEALLSMGSSVILAGDLNCKHIRWNSHTTTPN
GRRLDALVDDLAFDIIAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRSPDSVPVTRTV
VDWHTLGISLAESDPPSLPFSPDSTPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLPDDIGELLRAKNASIR
AYDRYPTVENRIRMRALQRGVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEK
AELLADTLQTQCTPSIQSADPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPIQ
LIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNNPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFG
FRANHSCVQQVHRLTEHILVGLNRPKPIYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVE
GTRSSPRPLTAGVPQGSVLSPLLFSLFINDIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDI
NPAKSTAVLFQRGNSPLISSRIRRRNITPPITLFGLPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPMIC
KRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKHMKSVS
ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITLALDTFSSNTRSRLRSPGNRTRRTRQRGRRAA
>GB:AAB94032 reverse transcriptase domain protein (LINE) [Drosophila mercatorum]
FERRTGPVGYLPSGIEKLMVQMFNNEPRIAENNSVEYTPTVTRLGDHQVRNADANLQTMFPCRECERSFRTKIGLGVHMR
HRHKDELDTARRRVDVKARWNEEELSMMARKELELTANGERFINKKLAEIFTNRSVDAIKKCRQRDNYKAKIEQLQGQAA
LISEANEPPTTQRRPSLSELEVTPSSSHSVPIAPPPIHSDDILLQELQGMSPVAVRRSWRVEVLQSIIDRAHISGKEATL
QCLSNYLLEIFPNRNDRPSSATVPARRPRNRRISRRQQYARCIKSLLDGTDESALPNQSIMEPYWRQVMTQPSPSLCSNT
VPRKGNMQEGVWSPITSRDLQVHKVPLTSSPGPDGITSQTARSIPIGIMLRIVNLILWCGDLPVPFRMARTIFIPKTVRA
NRPQDFRPISVPSIVVRQLNAILASRLTAAVSWDPRQRGFLPTDGCADNATIVDLVLRDHHKRYASCYIATLDVSKAFDS
VAHDAVFNTVTAYGAPKSFVDYVRRWYSGGGTYFNGGDWRSEEFVPARGVKQGDPLSPVLFNLIIDRLLRSLPKDIGVHV
GNAKVNACAFADDLMLFASTPKGLQELLNTTVKFLSSVGLTLNADKCFTISIKGQPKQKVTVVEQRTFCIGRARVQLKRS
EEWKYLGIHFTADGRARYNPSEDIGPKLERLMQSPLKPQQKLFALRTVLVPQLYHKLTLGSVALGVLRKCDKLVRSFARK
LLGLPLDVSVAFYHAPHSCGGLGIPSVRWIAPMLRTKRLAGINWPHLEQSEVASAFLSEELRRARDRAKAGVNELLSQPK
IDTYWADRLYTSVDGNGLREARRYAPQHGWVSQPTRLMSGKAYRTGIQLRINALPTRSRTTRGRHEMNRQCRAGCDAPSH
NHVLQRCHRTHGSRVSRHNGVVSYLKKGLETRGYTVYSEQSLHGQNRVYKPDIVAFRHDSTIVVDAQVVTDGLDLDRAHQ
SKVEIYNRQDLLTTLRSVYRARENIEVVSATLNWRGIWSFQSITRLRTLGILTAGDSNVISSRVVSGRVYSFKTFMFHAG
FHRGMA
>GB:AAC46494 putative reverse transcriptase ORF2 (LINE-element) [Drosophila melanogaster]
MTRADNRDILKIAFWNAGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPVSSKRGGVATIVNS
SIRHMALKPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLRWLPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQ
WGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRFEKRISSGADLSSDHLPILLEINLD
TNTLFLQKQNNNILKKNTNIELFKKVLERKILLNTEIRVAEDINDAISTFMKNIKDSAAESTPSPRIRDNPRRRHRQANR
NSHTLALDENTSRLLEEKRILSRVFKATKNYEDKAKLKAAENRLKKAIKILRENRINEQVEGIDTSNPDRMRKMWKLLDE
GKRTNQPNFPLKLETQKGPKWTKTIKETTETFVSHLEGRFKPNNNVPDYHIDRVNTGLRIIKESMLTERHNLNKNPHNQP
ITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKMILKPGKSANEPRSYRP
ISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHE
GLLLKLAKILPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPSPTERIML
STYADDTIVLSSDTLATAATRNNENYLKSFSDWADKWGISVNAAKTGHVIFTLKNDLPTSLRTMKIKGQVIKIESKQSYL
GVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILKSVLSPIWQYAIAAWGPLVTDAQIRRIQVEENR
KMRDICRAGRYTSNQTIRDRYGIKTVEEFYQQALHRFSETIKSHPNIAVRRIFTRHYIPNRLERSRQRYLKMTNEHITQK
QTGQTLSPKLLKIPDLNDCRTLKKRNERDKIRQTHLIELPTLLRLEEEEEELRRIKKQEERERREKETQKWPPDRWCELE
INLYNKQYRRGDLTRQEIIQKFRGQPLNVQRIILPDYKGDQEHN
>GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) [Mus musculus]
MPPLTTKITGSNNYFSLISLNINGLNSPIKRHRLTNWLHKQDPTFCCLQETHLREKDRHYLRMKGWKTIFQANGMKKQAG
VAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYAPNTRAATFTKETLVKLKAHIAPHTIIVGDFNTPLSPM
DRSWKQKLNRDTLKLTEVMKQMDLTDIYRTFYPKTKGYTFFSAPHGTFSKIDHIIGHKSGLNRFKNIEIVPCILSDHHAL
RLIFNNKINNRKPTFTWKLNNTLLNDTLVKEGIKKEIKDFLEFNENEATTYPNLWDTMKAFLRGKLIAMSAFKKKRERAH
TSSLTTHLKALEKKEANSPKRSRRQEIIKLRGEINQVETRRTIQRINQTRSWFFEKINKTDKPLARLTKGHRDKILINKI
RNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDLLNSPISPKEIEAVINSLPAKKSPGP
DGFSAEFYQTFKEDLTPVLHKLFHKIEVEGILPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQE
HIKAIIHPDQVGFIPGMQGWFNIRKSINAIHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGQYLNMIKAI
YSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEVKISLFADDMIVYISDPKN
SNRELLNLINSFGEVAGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIATNNIKYLGVTLTKEVKDLYDKNFKSLKKEIK
EDLRRWKDLPCSWIGRTNIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFIWNNKKPRIAKSLLKDKRTSGGITMP
DLKLYYRAIVIKTAWYWYRDRQVDQWNRFEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFNNWCWHNWLLSCRRMRIDPYL
SPCTKVKSKWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVYKTKRPP
TDWERIFTYPKSDRGLISNIYKELKKVDLRKSNNPLKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFH
LTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWDCRLVQPLWKSVWRFLRKLDIVLPEDPAIPLLGIYPEEAPTGKKDTCS
TMFIAALFIIARNWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFLAKWMDLESIILSEVTQSQRNSHNMYSLISG
Y
>GB:AAA74494  unknown protein (LINE-element) [Drosophila teissieri]
MTDPPDIHNFTAKSYQSQLGNPKFIVIKRKDNNSLERISPFIIKKSVDFACGGEVEVCKRTRDGSLLIKTKNELQAIKLL
KLTTMADVEVTATEHKTLNFSKGVIYCNDLRYIDEDTILQELKPQKVTEVKKIMKRQNPNSNSDTNNTTLIETGLIIITF
ESHKLPEILRIGYETVRVRDYIPLPLRCKKCLRFGHPAPICKSLETCTNCSEIKHTNDGETCTNEKNCLNCRNNPEINHQ
HSPLDRKCPTFIKNQELTAIKTTQKVDHKTAQRIYFERHGFQLRDSYAKTLTNGTTQIKTNTQAPNIDANTHTIQSQNQN
SYITPTSTPHTTSSKTTTTGPAKTTPLSNQPQQRHHHHCYDEPEDMDTYHPTDHPTFTPYSSQHTEDLKIKIYSKDKSNN
LSTNLKASKIKAKALNKKKHTNNSDSESI
>GB:AAB94026 gag-element zinc-finger protein (LINE orf1) [Drosophila mercatorum mercatorum]
TEEAQPRSCSARAAMKDALIMPPPDSPPRKIVACYEVSEDSDTSLAATITGKGSRSRLLLLPLRLYPLLHLLLSLLLPLL
LLLLPMRGHRHPPPTAATVAAVPDAKVSSNSVVERMQHIERKLRKAILVEDVPNAVALSVLDLAAKYQELVLDMYGAMKE
LETERRIRPQPVVTLAATTAAPAAPVAAPRIRKVAETWSAIVTSNNPEETPKQVAERVRKEVAPALGVRVHEVRELKRGG
AIIRTPSSGEMRRVVANPKFKEVGLDVKQNAASKPKVMVRDVDSSITAKQFMNGMWNNHFSGRMSNVVFEKSVKITSKPW
TAESGPTVNIQLEVDQKALDILEDHERIYVEWFSFRWHTVTPTYACYKCVSFDHRVAQCRMNEEICRQCGQAGHRASKCS
NPVSCRNCSFKGMPSTHRMLSAACPIYGAVLARVASRH
>GB:AAD20306 gag protein (Ty1_Copia-element) [Zea mays]
MSGDHAKKEMETGDDKPTTSQGSTSSSSKESRTKRREKKKKSSKRKEKRSSSSHHKEKKEKSSHKPHRSGDKHKRMRKVV
FYETDTSSTSTSGSDAASVTSKRQERKKYSKIPLRYPRIPKHTPLLSVPLGKPPTFNGEDYAMWSNLMRFHLTSLHKRIW
DVVEYGVQVPSIGDEDYDTDEVAQIEHFNSQAATILLASLSKEEYNKVQGLKNAKEIWDLLKTAHEGDELTKITKRETIE
GELGRFRLRQGEEPQDMYNRLKTLVNQVRNLGSTKWDDHEVVKVILRALIFLNPTQVQLIRGNPRYPLMTPEEVIGNFVS
FECMIKGSKKINELDEPSTSEAQPVAFKATEEESTPSRQPIDASKLDNEEMALIIKSFRQILKQRKGKDYKSRSKKVCYK
CGKPGHFIAKCPLSSDSDRDNDKKGKRKEKKKYYKKKGGDAHVCREWDSDESSSDSSDDEDAANIAITKGLLFPNVGHKC
LMAKDGKKKVKSKSSTKYETSSDEDDKNEEDNLRILFANLNMEQKEKLNELISAIHEKDDLLDSQEDFLIKENKKHVKVK
NAYALEREKCEKLSSELSTCHEILDNLRNENANLLAKVDSHVCIDPRNNDVDLLARIDELNASIASLRNENEKLIAKAKD
FDVCNTTISDLRTKNDLLHAKVIELKSCKPSTSTIEHVSICTRCRDINVDAIHDHLALIKKQNDHIAQLNAKIREHDLEN
EKFKLARSMLYNGRRPGIKDGIGFQRGDNVKINAPPKNLSNFVKGKAPMPQDNEGYILYPAGYPENKIKKIHSRKSHSGP
NYAFMYKGETSRSRQPTHAKLPRKKTINASNDHAISFKTFDASYVLTSKSGKVVAKIVGGKHKGSKTCVWVPKVLVSNAK
GPKTVWVPKTKN
>GB:CAA49283 gag,protease,endonuclease, reverse transcriptase,RNaseH (Ty1_Copia-element) [Volvox carteri]
MSERMTYTERLNVANRTTWLIRTKAEIIKLKAGSALVNALDESNSTSVERHQTACAVICGLLDDKDLPLLEKHKDARDLL
NALDERYKGLMEHHVTRLWRDFNAFKMQPNQSLRDYIKRIKDIVEELTACKQPVADANAVLIALKGLPSRYDPYVAPYYS
TTLMPKTLDELENNLLGVETVIDERASTSVLPNTLFAGKGDQDRGNERGGGNSRGGGYRRGNKYGGGNGIRCFQLQGNRS
LRQGMPKPKKECAKCHLLGHTAEECRNRRRRGGDGGAGNDGGYAAAVVERPLFMLELGDSPSRTVAAEMLELESTPAFTV
SPSAASGSTETSGPQLRELDATWYLDSGAIYHVTPDARSLRDYKPCDPIPLKCGGGEVHYAVGYGDLLVEVVKEQTDCYS
FHIGNNYYHKQKGPVVIKIRNVYYVPGFKFRLLSLKQLTNNGAQFSGSGTSMDVWNSRERWSLYAHCKYSVYSVKVKEKL
PRMQSGGPVASVHLVADRARLWHSRFGHLSYGNLARLADEEMVAGLDVTPKKFREVGAAVCEGCVMGKHSRKPFPESHSS
VGRALERVHMDLAGPMSVESYGGNSYVATFLDEYTGLSVVSFLKLKSEAIAVVKSVLTLLENQCGQKVKEVRTDRGREYL
NAELREFYGERGIVHQTSAPYTPQQNGIAERLNRTLMEKVRCMLIESGLPSRGWALAMHTANYLRNRSPVHGLKGTPFER
FYGQKPDVSDLRVFGCVAYIRVPDHQRRKIDPVSMKGVFVGYEPESKAYRVLMPDGRQLVSREVKFDERAFGLMSVKGLQ
YRVEVVRDEDEESETGWMQEGEEESEDSSDVQSSISFDVFEGSATVGANDSSGAEPASTSGGPVTVGANDSSGAEPASAS
GGVGTVGANDSSGAGSASASGGVGSVGGNNSSSTLSAEGGNEQPRNPPQLRTSTRSNKGVPPVKLNLSAVNGVPLTYEEA
MKSPEAPMWKQAMDEELASIRANEVWRLEIPPKSVRPLPVKWVFSLKKDEHGEIVRYKARLVAKGFAQVEGRDYEEVWAP
VSKHTTLRALLSVAARDLELHQLDVKTAFLNGELEETVYIQQPPGYVEGEPYLACKLEKALYGLKQAPRAWYARLRSELE
AMNFTVSQADPGLFYRDVLGERVYLLVYVDDLLIAAKDINIVRQLKDKLKSILMCVTWVRPVCFLGFEIERNRAERTMKV
SQKRYAKGLVEKYGLEDANGRAVPLSHGTTLHSAGQPLDVRQFRFGELIGSLLYLSVGTRPDIAYSVGALARHMSKPTVE
HWQAAKGVVRYIAGTAGLGIVFSPKSSNPSLHGYCDSDYAACVDTRRSTTGYVFLNAGGAVSWSSRLQPTVATSTAEAEY
MASGAATKEALWYRHLARDLQMRVSSVPILCDSQAAIKIINNPISSARSKHIDVLHHFVRERVARGEIVFSYCKSADMVA
DCLTKPLPLPQFKKCIQAMGLR
>GB:AAD12998 pol polyprotein (Ty1_Copia-element) [Zea mays]
MLYLLSQSDVVNVLDIPENDPANSGRKRKRSDGETSSKLWHYRLGHISRGRIESLVKEQILHPLDFTDLEQCRDCIKGKF
AKQIKKDAKHSTRVLEIIHTDICGPFPVRTVDGFNSFITFTDDYSRYGYIYPIKERSEALDKFKQFKAEVENQHDLKIKI
VRSDRGGEYYGRHTEYGQVPGPFARFLRENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMLSYSNLPLGLWMEALKTA
MHILNRVPSKSVARTPYELWTGRKPTLNYFHIWGCPAEARIFNPGQGKLDERTTSCHFIGYPDRSKGYRFYCPDRQTKFI
ETRHAIFLEDDMIKGSKVLREVDLQEKRIYVPFPMVEEPHFSIPTVVTPTVTPTVGETPAANVASSSATTTEQVASPSAH
IGPEPVAQDSSEDDDSVAPSDAPLQEPQVESEPEPSLRRSQRLRKSAIPDDYEVYAAENIECDEIHMSEDIDTEGDPTTY
EAAMRSANSSKWLSAMEDELESMRMNKVWDLEVIPHGAKTVGCKWVYKTKRDSRGNIERYKARLVAKGFTQREGIDYHET
FSPVSTKDSFRIIMALVAHFDLELHQMDVKTAFLNGELEENVFMAQPKGFVVSGKEHMGCHLRRSIYGLKQASRQWYIKF
DQTIRKFGFEENKEDNCIYAKFRKGKYIFLVLYVDDILLASSDKDLLAETKGFLSSNFDMKDMGEASYVLGIEIRRDRQK
RVLGLSQKSYIENVLKRYNMHKCNASPGPIVKGDKFGEYQCPKNQYEKNKMKSVPYASAIGSIMYAQVCTRPDLAFTTGM
LGRYQKNPGIEHWKAVKKALRYLQGTKGLMLTYRRSNSLQIVGYADADWGGCRDTLKSTSGYVFMLSGGAISWKSCKQTA
RASSTMHAEFVATYEATGQAIWIKKFVPGLRVVDSIERPLRIYCDNEPAVFFSHNNKSSGSAKYIDIKCYIVKEKILDHT
IQVEHIRTHQMLADPLTKGLPPSVFSKHAAGMGLREYL
>GB:CAA36615 ORF3 (Ty1_Copia-element) [Solanum tuberosum]
MVPSLQLLEKELLNLSPSLVLHDTLHVPKLSCNLVSFRKLTRSLNCRVIFYSDLCEFQEKVSGKMIGSARESGGLYFLDN
GNNSLQLNPIFLNSTFVLNKVMLWHYGLGHPSFYYLRHLLPQLFRNKNPSLFQCEFCEMAKHHVDTSFPSQRYQASKPFT
MIHSDVWGPSRISTMFGKRWFVTFIDDHTRLSWVFLLKGKSEVKNVFETFHVMVETQFNEKIKIFRSDNGREFFNEQLGS
FFRKTGVVHQSSCPDTPQQNGIAERKNRHLLEATRALMFTSKVPQHLWGEALLTATYLINRMPSRPLEFKTPFKVFRESF
PSSRLTTDLPLRVFGCTTFVHVHNRSKLEPRAKKCIFVGYAPSQKGYKCYDPHARKIIVTMDLTFFESQLYFTTHLQGEY
HLGEDSFFVILRKLDIKQMRSLILQINTDVRDVGEDINKCDPRDDKDQSDLMIKTQKFKPEPVAPSNDKNKNGNREQKTE
MQVYSRRNRTQEKRTEDSQHCQKSVPQDLTVIQGTLPTDSISNSLDLDLPIAKRKGVRNTSKYPISMFVSYKKLSPSYSA
FTSQLSSVEIPTNVQDALQVPEWKEAILEELRALEKNETWELVDLPEGKKPVGCKWVFTTKFKSDGSLERYKAHLVVKDH
TDISMHDYLETFAPVAKLNSIRVLLTIAVNLDWSL
>GB:CAA36614 ORF2 (Ty1_Copia-element) [Solanum tuberosum]
MELVIGKSYLFLPTAKDAWEAVRESYSDLENASQILELKIELWQAKQGENEVTTYYNEMVSLWQELDQCYNDEWECSMDS
VKAKKKEENERVYLFLARLNREFDKVRSRILGKNPLPLRETFSEIRTEETGRKVMLKPDLNVELKPVIDSSALVTVKNEE
DKKKKPLCDHCKKYWHTRETCWKIHGKPLNWKNKGVDDHGFQSQNGQALQTTYFDQGQQPSPETSLFTREQLEILHKLLQ
SPQFRANAPKSSNPSCSFAETVSSVSSAFLSVNSNQIDSWIIDSRASDHMTGSFRFFSTYTPCAGNSKIKIADGSFSAIA
GKGTIKLITISCTS
>Nobel#LTR/Pao 1107-6264 via tfasty with BEL3_Dpse, 3 frameshifts. [Drosophila persimilis]
MTSKANNIVLEELKKKRSCRVKGIRLLADRLEAGDIPLVLTELECRLETLMRSIDTARELQEKIEDIDIDDEFGVELEEL
SIVTKAKLMSLICALKTADETIQAVPAYGGPTRARLPKLALPQFSGNYSDFKNFIGLFETLVHNDQSIPIIEKFNHLLSC
LSGEALGTVRAFQVTETNYEKAMASLKRVYDNDCLIFKNHIDALFNLPKMTQQSASSLRNLIDTASSIYGSLLSIGDDKK
ISNAMIIHLVLSRVDPVTKEKWEEQLDYDKLPLWTDCERLLNRRHQHLSAENSDKPKQEQKAVPSKPHNRSSFACSTANT
KNQQCSYCNAKGHLLTECSPFGRLAVMQRFEFAKTASLCINCLQPGHSVVRCKAKKCRVCGCSHHTLLHRYTVANKSLAL
PSPPENSSPPPNQNQPSTSHALHATAMDRVILATSIVSVRTNNGEHVLARALLDSGSQTNFITEDLAQRLQIRREESCIN
LLGIGESNSQVKKKIHTVVKSRITGSEFSVDFWILRSISGYHPDQTLNVSDWKIPKNLPLADPYFFKPQKIDMLIGAETF
FELLSVGQIRQGPDYPTLQKTLLGWIVSGRYTPKVTATQEARNCLSCREESVIHIDNTLQKFWSLEELPSSKKSLSPEHK
LCEKHYRRTTQVVPSGRFEVRLPFKSDPSILGNSFEVAKRRFLSLEKRLSRDPELQKMYLEFMEEYLSLGHMSTTDNTIP
KTPHYFIPHQCVLRPQSTSTKLRVVFDASCKTSSQVALNDILMVGPTIQDELYSTLLRFRLHRYALTADVKKMYRQVWVA
DADRQFQLILVWRRDPSESLRIYQLNTVTYGTGPAPFLAIRCLKRLSESAKLSFPKAAEVIDSDFYVDDMLTGAGCVEEL
KTIKSDVAQVLQTAGFELTKWFSNSPEVTASESTVKPITISDSESTKALGISWLPHEDVFKFQIDTSVMGLRATKRNILS
VTSKLFDPLGLLSPLVIKGKILLQELWLNKLDWDESIPMNLETAWNLLKESLGQLEKITIPRFVHTDPMSPIQVHAFADA
SMRAYGACVYIRRKTAEGFKVSLLTAKSKVAPLKTKTLPRLELCAAHLLADLCHRIKSLLKVPIDKMIFWSDSEVTLHWI
RSHPSSLSTFVANRVAEIQEWSSEATWRHVPTKQNPADIVSRGCDVEEIVQSIWFGGPEFLKFEEESWPRNPHFELSEEE
IQMESRKKSVGLTVAAKPNYLVDVIEGYSSHLKLLRVFVFVFRFIRKCKDKSLNFGKIPSSVEYDEAFLKIVEITQKNES
QEDIERVRKGTKLGPSLQRLNPFIHEEAGTWCSFSLLRVGGRLVNAPMSYNAKFPLLLTKRSQFVQTYVRYLHQTNFHAG
PRALVSILRQRIWIVNAQAVCRATVRSCIRCFKCKPLLQTQMMGNLPADRLRALRPFSVCGVDFCGPVYTTLKIRGRPPY
KSYIALFVCFASKAVHLEIVSDLTTNSFLLAFQRFVGRRGCPQRVNCDNATNFVGASRHFSELRRKMEAEADAIREFASR
SGCEFAFIPPRAPHMGGLWEAGVKSAKGLLLRAIGSALLTAEELETVLVGIEAVLNSRPLGPLSPDPNDGDALTPGHLLT
GGPLIAPPAPRTPDQEGLSCLKRWRLVSSARQMFWQRWSREYVLGLQIRCKWHQEEPNIKEGTLVIVAEDNLPPQQWLLG
RVVGTTAGQDGRVRVVELRTSSGATFRRPIHKLALLPMV
>Catch1#LTR/Pao 34-5691 [Takifugu]
MAVAATGKTVEELRKDRVTAKRLFTKVCNTISRNHEDMNEEELKDILSKLKSEAEKLMEANDDLQAGIIADQEAEEDSGE
EAVLDEQVRTDLEKTTSDCKRRLAEGRNLIQQSLWSNFAQADLSIAVRTTETVYDHAQTMRPEDGPGVYDHVISQLQELF
KRAKEEYNKWTSWIPGHNRREIQDQLRELEFSIPALITRKADFIKVTVKKDPMPQAAATVNYSTPAIRLKPTALPRFNGC
QREFFRWRKDWEALQSQGEPTGSREVKKAQLLDCIDEKIIKDLRLSMYSTADEIFRVLESRYGNKTPIALEIVEELQRTP
SVRRNQPRKIVELIRTVEKALQDLCELGDTGAIKNPLVTKSIESKLPDSLKKEWLIYATDTRNAVQPEKRFDCLLAFLKG
QEPIYEQLELLLEEEPVRKEARAELRHARTKVTKSDGDQAGCVVCGDVKHKRKLYFCRQFRSSKLEDKQAAVRRIRACPK
CLEIHGDELCCKPGFLCKGQRCIDGRAEHHYILCPYAKEKKNDPRRDRHSKEGPAAKAFTEDQEKFFSRLSPELAKQCRD
VFSNSASKTFNAVSNHSSLLAESGLQELPVIMMLLEVTANAGQRLGTLIDLASDTNYITHSAASRLNLRSEEITLVVHGV
GGMEVCVETKRYLLRIRVKTSQGTLKSHQMVCYGLDRIAEVHQSVTAGQLQRFFPRIAQAELERPKEVDLLISHREGRLA
PQRVQAVGDLVLWDGPLGKTVGGAHPHLFEKLVLSAHASRTHFARSMRTAAVRYVEMAGTPPKPPLNSHYIGKTNSAHQE
FLKWWRWDSIGTACEPKCGGYRCGNCQPGGKEMTLAEERELEVVRAGLTHVMSDDHSTEPHWHAKYPWVDDLQSLPNNRN
AVQATFLRMERKLAKEPNWKVAYAAQVHEMLSRGAAAKLSDSTIAEWTGPIWYISHLIAPNPHSVTTPVRLVWNSSQRFK
GVSLNDLLLKGPDVLNQIRAVLLRFRSGVYAAIGDVRKMYNSVWLEDREVHLHRFLWRNSAEEEIQEYAVTRVNIGDKPA
GCIAQLAMRETASLPQFSHLTAEREVLHRNAYVDDILTSHNDLKQLQATTKGVEDILKAGGFALKPWVFSGQSGRGDHID
RQETVQKDAFVLPNQMSDDDNKALGLGYIVKEEKLHVMVAINFSKRRKKMHLGKDLEPQQVRFCTPSPLTRRELLSQVSG
LYDPVGLVAPVKQKGAILVRRAFQEARSEQHPAKDTWDKALSAELREDAIKLFEECVRLRDVKFDRALTPSNFIGKPWAL
TFSDGSEHSYGAVMYLRWETDESPIIRLVEAKAKLSPLDQKGEAVKAEVCGAVIASRLKKYFQSHSPIQVDRWFHFVDSQ
TVLGAIQRECYGFQTFFSNRIGEIQTNSRAEDWWWVPGPQNVADMITRGASPESLTEHSIWQRGPDFLKDPIDTWPVKSA
KDIATNARENISKLQRKAFVDAITRSMANDPKQKMVTSKAESRRPSAGSEIKHLVDAKRFSTLAKFIKTVALVWRAAKNF
LSFLKDVENKYSSVSKWEAVSSKGLISVKEREDALRDIFLATQQGVKFQDSTRNRLVVYKDPSTGLLVASGRVQSFRNDN
RGVPLLPYDAWVSTLMAREAHGWSHDGVAGTLLKMRCKAWVIKGRRVAQRVVDGCVLCRKIRARRCQQVMADLPPERTRP
AAPFQFTTVDLFGPYLVKDDVKRRVTLKTWGVVFSCMACRAIHLDLVNSVSSESFLMAYQRFTAIRGHPSKLWSDPGTNF
IGAKPVLQDLYQFLESQNKAALAEYAVSRGTEWRWQIHPADSPHRNGAAEAAVRVAKRALQALDKNTMLSYSEFQTVLFT
AANLANERPIEARVQSKEDCIRYVSPNSLLLGRASNSGDFNSFDF
>HEL_hel#RC/Helitron 1-8451 [Xiphophorus maculatus]
MSCSVVAAIKHHISPVCTWKTSDVDEVGVEGRKLAEYVARERPNRGPKPELCKLVEDLTIFGRKWKVVIGNIMFGTFGFE
QDGELYEILKKYLLINGMCMFSLHGATCLVIQHGLYFVVVDFGTRNSQGLASQSGTSVVVFNTCLNDLMIHLLNLRESLN
AIEYGISAISVQEMYSNVETCAAVYADRQATDACHSASSHVASLSGSFHQGDVQFKYAGVQCTAISAVALTKHTLDSVFS
WNADILDDVVVLGDQLYTFLRDNNLISGGSQLLCVPDLPKKMHVDGQSFEYAYGDYVAGAIDTLDPELLESGVHTSLWDG
LSKMCAKYETSFITISGSTCALISSNGRYAVVDSHARNTDGMVHSNGKSVVLYFNTLDDVFVYIERFSSQLNVTPKLFEI
SGVDIVQTGSSKIASEHVAAVPGSSDVFDHTFTGVDMQDDSCGEHSSQLDMSDMDDDVVVTGVQSNVLYFNPVSEEIARS
LCGKLNVEYQRANSVSCVVGELGVPCLTEKIVGDGNCFFRALSQAISGTQKNHRKIRLAVVKQLQRNSHTYDSILRSEYS
SISQYIAVSRMQYVGSWATEVEIKASADYFGVNIFTFCDDKWLEYSSLSSVSNHALYLQNISGNHYETVTCVKQPRSQTC
YGYCMNSDLSGEYKTRQVTAEQNIARIKTVKTETSIEDECVGILQDNQNTSLFTPISEVTAKTLCNNLKIDFEEHHFQKV
ILRGPLGHVCKTKNIINDGNSFFRAVAYALSASEKNHRKIRLAVISHMTKNTEECKKYLAKNFASVTEYVNQSQMKYIGH
CATEIEFKSTANMLGLDIYVFNGTQWTKYNSNSSHLTNEAIYLQNCDEHFDVVICAKQGDKDFCFGLCEENVSLKKRHIR
TRSPQVPKNERQAVLSGKANDSFSTYLRQKKNQRYTTKYRTKMVYRQKIKLNKTNTYKKNLLYKEQKKKWIRNKYRQDQT
YQKKLRQVSISKYKEDKCHREKVKQISIAKYNTDQSHREKVKLISIAKYNTDQSHREKVKQISIAKYKENKSHREKVKHF
SRKQYLNPQHKIHIISNVKLKRQEIKMKSKEFDFVVAQFFDKVKEGPNFVCCVCFRLLFKHQVLNCHKDSYRKTKEMSLI
TDKCISDDYVHICNNGCISPCNLKTCRNKLYICYCCHHKISKGQMPPESSCNNLTVDDIPPQLACLNTLEQHLIALHIPF
MKMLALPKGGQNGVHGPVTCVPANVAETCSMLPRSNMEGFLLPVKLKRKLTYKGHYDYQYVDSMHVQEALWYLKHCNFHY
KNVEFNESWINEFCQEDNNSVLNNTSVNEENEDISIGENDDDLLHDRQQHCMFQDTCLMPVDIGQEALDLYVDNVLNVAP
GENNNPIKLLSDCTNEAKCFPVLFPSGFNTYHEKRQYRLTLSRYFNNRLLHADGRFARNVEYIFFAQYMSELEQVVSKVS
IALRKGTSRTPQNMSEVLRDEQSISKLLEFDDGYRFLKPIRGTPAFWQTAQRDLLACVRMLGKPTWFASFSSADMRWTNL
LYSILKQEGRTQTLEQLQWAEKCELLRRNPVTAARMFDFRWHVFVREVLMSPAHPIGKIEDYYYRVEFQQRGSPHCHCLF
WISGAPILDKNTDEEVIAFIDKYVTCEIPSEEDALSEVVTSVQQHSKRHSKTCKKKKTVCRFNFPRPVSCRTFICRGEKY
QDPVKTCTCNLDKTDGSADCECLDKNKTRPEQMDSDVASNILTKIKNAISDDNCPYNTVEEMFEGLCMNQGVFETAYKRF
SRNTHVVLKRQINEIWINQYSRPLLKAWDANIDIQYCVDAYACCVYIVSYMSKSEREIGLLLGNAQREAAKEGNVSAKDA
LKRLGSVYLHNRDVCAQEAVYRLTNMHLKECSRKVVFIPTGDNIVKMSLPISVLKQKATSQDLTPEDMWMTGIVDRYKNR
PNDDVFPDMCLAKFASEYRVLPKNEKCRNPVKLNKNFGFVVKRTRTKPAVVRYARFSETKEPERFYQSIMQLFLPYRFDS
ELKPAHCETFGDFYQTGVISFVDGTRHSVKFVVDLNRSEFEVESDHFEAVDNVTGDVMLEDAWAELCPEVELERLECVEL
QRERQIENSDPEQIPDLSLQCKEFSVFEKRKVTRTEGLALIRSLNEKQFSVFYQIRQWCLAKVNGKNPEPLHIFITGGAG
TGKSHLIKAIEYESKRLLSTVCQSPDNTCVLLTAPTGIAAYNLEATTIHTTFSIGKDVRLPYTPLSEEKLNSLRVKYCDL
QLLIIDEISMVDHNLLSYVHGRLRQIKQTVKSYGNISIIVVGDMYQLPPVKGKPLYSDGVATNIWSDLFKIVELTEIVRQ
KDAVFSQLLNRMRTHSKGTPILADDLQILKRCETGEVSSALHIFATNKQVNEHNIHRLYETCPEFVSIGAQDYVNDKKTG
KLRLLEGNHAKASNTCLSEVLLLGKGARVMLCKNVDVGDGLVNGVCGTVTQILIPEKDKFPNVVYVKFDNERVGMQKRKS
CHYASSDLAGSTPIGPEEERATVKGGMRRQFPLRLAWACTVHKVQGLTVDEAVVSFSKIFAPGQAYVAISRVRSVLGLTI
QDFNEKKIFCKDDILVSLQSMTPLLSGPIQLDRFNTSVFTVFLMNVQSLNRHVKDLSCYTEHWKPKCIAITETWVSSTHT
DTVKIDGYSFTNRPRCLSYTSRHPELIALQDQQHGGVGIYCADDVEFEILQQPELNLECLVYRFCSFNMVLGVIYRPPLY
PLSLFKNNLGQLLDWLEKQSDTIALIGDFNDNILKSSIITKFVCDKGYLQMVVEATTEKDTLIDHVYVKSKTYKVEAVVV
PTYFSDHEGIMCGFSL
>Helitron1_PPa_hel#RC/Helitron 1594-5643 [Physcomitrella patens]
MARALSTIDNFVDVNVDSVGSMCIQCPKCLAFRFKKEKNTICCYNGKIANEHVNHPIVHPMLNELYMGTTPKSREFLKSI
RKYNQAFAFTSMRSKFQSGQVEGRGVYTFRVNGELCHHIGNLQPDLDEGARFAQIYFLDDGLQTNRRMEIFDDLHRDVVN
NIQEVLESINALVRGFKSSRDVLQRGQNMGLRISGEVPFGEHPRRYNRQVVPEVAAVVLDEQYMNFGRDIILHQRGGDLI
RIKEIHPAYDALSYPLLFPDGRCGWSPTFKADTGVTLKSYVQYLLQKRPESNVLHKAGRLFQQYVVDQYLRVEHENLLFI
RQHQTELRAECYQGVVDALQEDNGARIGRRIVLPATFIGSPRYMQKLFHDSMVLVRVLGKPDLFVTMTCNPTWPEILDEL
EPGQSPPDRPDIVVRVFELKLRALMDEITKKNVMGETIAFCYTIEFQKRGLPHAHILLWLKDKVNDCDLVDRIVCAEIPD
LDRQPQLYAAVAKHMMHGPCGLDNPNCPCMEDDRCTKNYPMQARDTTEVDGDGHVLYRRRNQGRYIEKRVRGQIVRLDNR
WVVPYNPYLIGRFNCHINVEICSSVKTVKYLHKYIFKGPDRGVVETDEVVDEIKDFLEGRYVAAQEACWRLFGFETNNKS
HSICRLPVHLPGQQYVTFKEGTSLHSVIDQNAETKLTKFFELNCHIRALIASGNQGNHMLLRYMDLPLYYKWDVKNNMWE
RRVRKIKVFGRINMVPIGTEVFYLRLLLTHVEAPTSFEDLLCFHDIVHPTYKAACIARGLLQDDSEWENCLQEATVIALP
KQVRRLFATLLVFGQPLDPLSLLKTHLDAMSDDWRNDQNRYCKAILSIEEYLSSSDKHLTDFFNIEELNEFGYSNIVDVG
GDSNDNIDFDNQNITFLEEDVGRLNEEQYIVFNAVTTAVLNSDSPDRLFFLDGPGGTGKTFLYNTILGYLRGRNVKCMAM
ATSGIAACLLNEGRTAHSALAIPLQLHDASICNISAQSTLGQSLREVQLIVLDEACAGHRFMFEAIDRSLRDIRNIDSPN
GGVVVLYGGDFRQTLPVVVRGGRKQTVQACLRHSYLFPLMQHFHLTTNMRLQSQPDFQRFLLDIGEGKTGPKVDLPLGLV
APGNSLDGLIDAIFDDPVDFSERVILAVRNDDAQEINRKITDRIPGDVHQCFSADFVHENDEHAHHYPVEFLNSLQLSGL
PPHQLSLKCGQYLMLLRNLNPAKGLCNGSRLRLLQVSSSVLLCEIVEGRYRSQEVLIPRITHHCNDSRLPFTLCRRQFPV
TGAFAMTINKSQGQSYDRVGIYLRNEVFSHGQLYVALSRGRHPANIKVANDNNEAVGTVKNIVYHEVFT
>Helitron1_AG_hel#RC/Helitron 820-6198 [Anopheles genus]
MQPSVSDIVSQNLTPPEETPNEKKARLQRKRQALYRAKKRLPGAAPTLAAVQDDQQAVPSTLAGSSLSAASAILQQQQRR
NTDDELLNEIAGRYSTPPDETPPEKKARLARKRQALYRAKKRLAGAAPTVAAVQDDQQAVPSTSAGTSLSGAPAILQQQQ
LRRNIDDDLLNEIAGRYSTPPDETPPEKKARLARKRQALYNARKRMVQTPNVATVVNRAPAPASAPVPAPAPAPTPALVD
PTAAVAIRVPIHQQLQTYVRHLRDHEADQQRQFIARRRMTGHLRVAHGNHESYSCPSLHTLAPRVPCNFCSALKWPGEPP
SVCCNSGQVVLPPFPEPPAELRQLFDVPQFLLNIRRYNNAFAFTSIGASIRGNDPVRQDLRVGHGGIYNYRIQGALCHRI
GSLAVLPGRPPCYAQLYFYDSSSEGQYDEMLNARAKAYGSELNREILAILQRVFSTHNPIAEMFKHAYERMSVRDDLRLC
IHSRIPGIDQRRYNAPTADEVGGVFVCDDTTGATEHTRDIVLQHRATGYLQPVFDTNQLADALQYPILFPRGETGWTYGM
PKVQRRTRQQQQPSRPTSSSNGAAHIDENDDAAEDPNPELDGAERSANQITPREYAAYRIAWRENAQTLMHRAGRLFQQY
CVDQYCKIEMQRLKYLREHQAQLRTEAYTGFMDLAGAEGTIADLHPDNLPNVAVEIPVVQEPPVAPRRSIIDPPSNLSRT
GTRVILGPSFVGSNRYMRAQYQDAMAIVRALGKPDLFITVTCNPKWPEITQCLLPRQQAPDRPDVIVRVFRLKLKAILND
LTMGALGIEVARIHVIEFQKRGLPHAHILVILAEEDKPQTPADYDKIVSAELPNPATSSQLFETVQSCMMHGPCGAANPA
APCMKDGTCEKGFPKSFCEQTRSMDNGYPQYRRRNNGRSVTVKGIELDNRYVVPYNPWFTHKYNCHINVEVCTSISSVKY
LYKYVYKGHDRLSVTLAVGNDEIQQHIDARYLSPTDSCWRIMRFELQAKTHTVVTLPIHLENQQNVFFRANETVSCVLNR
GNHTMLTRFFQLAAHDNFARALLYHDVPTYYRYAKPTANQRLPWQEPGTKHWIRRIRTGHKTVIGRMVSCSMQLMERYCL
RLLLCYRKGPTSYEDLRTVNGSVCETFQQAAINEGLLEDDSEWDRALEEAATYRMPAQLRHFFALILSSGMPQNPRTLWE
SYASEMSEDFHHRNRDRYTTEESDLNKLLRDVEHFRALSDIDRYLRGTTPSKVLTSSPGMPQLSEYEHVQAHIMDDDDVN
EFIIAERSYLITDLDATLATVHQLNDEQRMVYETVTAAIDRQLATAASQANAGDQRLFFLDGPGGTGKSFLVEKILAHVR
RCGEIALATAASGIAALLLTGGKTVHSTFKLPLDLNNHSTCSITVQSKRAEMLRQTALIVWDEASMSSRFALEAVDRTLQ
DITGVQLPFGGKVVLLSGDFRQILPIVPKGTDAQIINECIKKSTLWPLFRSLQLRDNMRVRTAPNANQASELRDFANLLL
RIGEGRHDTFAGLDPSLAKIPHDMIVPHTANPTNDLNTLIDKIYPDMQRHFQHPSFFSDRAILSPLNVDVASVNNLVLDR
IPGPEQEYRSVDTLVNPEEHEHLQLPSEYLNTLNVSGIPVHRLRLKRFAPVLLLRNLNSDMGLCNGTRLQIVGLKRNCLH
AKILTGTRRGEDVLLPRIFCDSNDKGHPFQIRRKQFPVQVCFAMTINKSQGQSLHHLGLYLPQDVFAHGQLYVALSRVTS
RANIAVLIPNPKRADEEGVSTSNIVYREVVDR
>BEL-641_AA#LTR/Pao 1270-6582 via tfasty with BEL-597_AA, 4 frameshifts and 6 stopcodons. Most error at very end. [Aedes aegypti]
MTEKKIREKIKKRERIVASLKRHAQFLGSFNPDIHTGEVQSRLDKIEAKFEEFEEVQEEISELDVEGIYEEDCTVAYEEF
EKLYYRLRAALLAKLPTEGTAADLNNTLARNGPPLGAHTGVRLPQISLPEFDGDYKGWLSFKSTYVSLIHDSGELSDVQK
FHYLKSALKGEAAKLIESLTLTNDNYSIAWNTITKRYSNEYLLKKRHLQALMEYPKVEKESSTAIHALVDEFEQRLKILK
QLGEKTDDWGAMVVHWMCSKLDANTLQLWEDHAASTKDPTFTILVNFLEKRTRVLEAVSSNVELKSSMQKVEVKRQKVVV
HAATDGEKSGSACCCCGESHFLGRCSRFSKMTLKEKLQFVNSKRLCSNCLKSGHWVRDCTSKFSCRDCGKKHNTLIHPGF
PLSSSGAVHNDHTVGKPEKTRNEKPVATNVATNEMESEDESDQGAVGSYNVGAKSGRISNVLLSTVVLVIRDQHGGKQMA
RALLDNGSQANIMSERLCQMLSLKRRTINVPISGVGEAETRARFLVNTTVSSRVQDFSVGMEFLVLQKVTSELPSGHIPV
GHWKIPTDIQLADPNFNVSNRIDLLIGAEHFYRFLFERDTKRITLGPGLPMLINTVFGWIVTGKVSEVKSKAVSCCVASA
PDSLEAQLHKFWEIESNEDRPAWSKEEQDSENHFLRTFSRTEEGRYVVRLPKHVNFEQMLGDSRAMALSRFKKLERQLGW
NTDKRLQYNAFMQEYLDLGHMRQVSEEELLEEAKSPRKGYYLPHHAVLKESSTTTKVRVVFDGSASTDSGYSLNDALLKG
PVIQDELLSLLLRFRKHEVALVGDVEKMYRQVQVHSEDTVLQRIFFRFTPEEPVQEFELTTVTYGLKPSSFLAIRALHQL
VTDEGAEYPDATDAIVNDFYVDDYIGGASSVDEAIQLQNNLDTLMKKGGFALRKWCSNRPEVLKGIPADQLGTNLSISFD
INPEEKVKTLGITWEPGTDQLRFFYDTTDSEQAWTKRNILSSIAKLFDPLGLISPIIVTAKMLMQELALLNIEWDTPVPV
DIEKKWKDFHSQMYKISELRISRFAFASKWVSVQFHCFADASTLAYGACLYVRTTDAVGNVRIELLSSKSRVAPLKRLTL
PRLELCAAKEAALLHSKVTKSLSIENVQSFFWSDSTIVLHWLRSPPNTWQTFVANRVSTIQITTHAHFWRHVAGKENPAD
LVSRGMAVDDFLNSQLWKEGPPWLRDTEDAWPYSDEYCTPCEEHLEIRKNVHTVRVAEPPNELFGLRSSLPSLLRVVAYC
RRFAHNSRYPNDRVASVELTADDIKSAKMALTRMAQAERFPEELKDLQRQQHVDNKSSLKRLCPFLDEDGVIRVGGRLRL
SNESYTVKHPAVLPNHHPFTDLVIQFVHSQNFHSGPQLTLADIRQEFWPIHGKRVVNAVLRKCVRCFRTNPTPIQQPMGQ
LPVGRVRPGRPFLITGVDYCGPFFLKSSRRNTAPIKVYIAVFVCFSTKAMHLEMSSDLSTASFLSVLRRFIGYRGIPAEI
HSDNAKNFSGARNELKALYDLLNDPLSFSVICKELSQQGIKWHFIPPRAPNFGGLWEAAVRSVKTALKKEVGLKQLSYDQ
FTTLLVQITATLNSRPxSTLSDDPRNPQRQLPAFVIGSAKKALPEPNIISIPTNLLDIPQIQQMFxHFxxRWMAIDPARS
YKYNExPAFVPIHISSIAVLRKDKLNQFSWxLMKIIGLHPGSDGIVRVATVKTATGVYKRAVNRICPLPTDDVGVRTTRS
SAHLRIRKDKI
>BEL-604_AA#LTR/Pao 32-5790 via tfasty with BEL-617_AA, 1 frameshift. [Aedes aegypti]
MAHKQPLNESYCLCESCHQSPSADRGMVACDECGKWFHYMCVNVDESIKDHPWCCEACLLIRSRRHRSVSSTSSRRRFRE
LELKRLDEEYALQQEYMRKRYEVMASCLEDEEEDNSQDGSSVNSSVSRTRKWINSQREAHGNFGAGQACSLPSIPNVGPS
YVVGHGESYEFTPFGRPESRVPTRKNTVTAINQFEANVSRHVPSLPEPLTSVSSPHGLGRSQTLNAASYRGGSSIIPALW
QIVSPGLAPTEHPNVRNATAQSSMPNNQPLVSREQQSTMIAPIAGPSPAQISARQVWPKRLPAFSGVAEEWPIFISSFEN
SNAACGFSDVENLIRLQESLKGPALEIVRSRLVLPANVPKVIDTLRRIYGKPEVLIRSLIAKVRKIDPPKSERLDTIIKF
GIAVQQLCDHLDAANQQDHLRNPVLLEEMVEKLPASFKLEWVRFKREEQQVSIRTFGNFMEKLLDEASEVTLLNPSSETT
TKQESKSSAKPKGYVHTHSESEAVPNPGTKTEAVKSHDDKPCATCCKVGHRARNCEEFKRLTVKERLQLVKDRQLCAVCL
YNHGNMRCRNKMQCNVTGCNGRHHALLHQVEPQESSCMVHQRISKSSVVFRVVPVILINGSKEVATFAFLDEGSSKTLLE
SSMARKLGLKGAVRPLDLKWTSGVTRTEKSSMNVRLTVSGKGSGERFLLDEVHTVERMNLPKQSVNFDDLVSRFKHLRGL
FVENQADAEPTILIGSDNLDLMAPIESRIGKKGEPVGLRCKLGWTVSGPVSSNASEEYCGVHQCDVSMEQSLKNYFTLEE
AGIACPYRVESDEDRRARGILEKTTRRIGNRFETGLLWRTDEIRMPDSYAMAFRRMQNLEQRFKRNPDMQEKVARAIEDF
VEKGYAHKASTDELRRSQSGQEWFLPLNVVVNPKKPGKIRLTLDAAAKAGGTSLNDMLLKGPDMLVSLLDIINHFRGRRI
GFGGDVKEMFLQIRMRQPDTRFQKFLFRQDPSKNPDVYVMDVVIFGAKCSPCNAHFAKDTNAREHASQFPAAADAIINRH
YVDDYFDSADSEDEAIQRAREVREVHSLGGFEIRNWVSNVPKVLEALGEEGKPTKTLCYDKTLESERVLGLLWVPEEDVF
TFSMGLKEKLIPYLVNKVRPTKRIILQCVMSFYDPVGFLSPLLVHGKIIIQETWRSGTDWDEPVTDEIFNRWLSWTRILP
AIETVKVQRCFFGDESINNITSVQLHIFSDAGDDAYGCVAYLRYRVAGEVRCTLVGSKAKVAPLKLTSTPRLELQAAVIG
ARMMTTLLASLPVSIQEQFLWVDSMTVLSWIRSDSRKYKPYVAHRIAEILHSTDINSWRYVPSKKNVADDMTKWGPGTMM
DADGRWFNGPPFLYQAEELWPEQPKTRATVTEEIRPCYLLHHVGITQPIIDASRISNWKILLRTVALVYRFVSNCKRKRA
GQSIEAVRSAKSRKSTLPAVLVEIRQEELAKAERLLWRIVQADAFPDEVKILKRNRELPPDQWISIDKSSKLYKTSPFLD
EDDVIRMEGRTAAAVFTEMCTRFPVILPRNHIITSKILEDYHVRYAHGSKETVVNEVRQAYFIPKLRTAVGKVINSCLKC
RLRKSKPVVPRMAPLPVQRMQPFVRAFSYVGLDYFGPIDVTVGRRKEKRYVALFTCLVVRAVHCEVAYSLSTESCKQAIR
RFIRRRGSPVEIFSDNGTNFQGASRELRDELERIDRDCANTFTGTNTKWTFNPPSAPHMGGVWERMVRSVKEAMAALSDG
RRMTDEILVTTLAEAEYLVNSRPLTYSGTEDAELDAITPNHFLLGSTSGQHLPFQVPITVAEELRSSYKRSLALANEFWN
RWCREYLPTLNQRSKWNVESRSIKAGDLVFVMDDGKGAAGVRGIVEEVFAGADGRVRQAVVRTNGGVFRRPAARLAVLEI
>BEL-602_AA#LTR/Pao 20-6694 via genewise with BEL-30_CQ#LTR/Pao, 1 "intron" (3326:3959) [Aedes aegypti]
MPSSKEKEHNPESTGYDCALCERPNHADSNMVSCEKCQSWFHFMCADVTAGIENLPWTCKECLNTGTADKSQHREATVVD
VSDASGKEPADSLDPRVDKRSSNNEQDQDSDQEEAEMQHQIELRQMRAKFERQLQREKEKMVLKIRLEREMLQRKKEAEA
EFHKMRNEMYKEFEGVMDPFVQEEGAVGGTYVSNHVQLETDLEKAWKEKFKFPEQQGKSADDIRGTFPKSSTPENAPLQR
DTINNRQSAIENVLEESTPLKNPQVPTVKIDKPVLSHPPHPELSANIPRNSALYQAPISTANIEVPATFNPSANQQGIRN
QHQGEPELTKAQIAARKGPFAKLPVFTGRPEEWPLFISSFNNGNAACNWTDLENLGRLQESIRGPALEAVRSRLLLPESV
PRVIDTLRLLYGRPEQLLHSLMLKARKADPPRIDRLGTFIHYGMVVQQLCDHLVASGLIDHLVNPMLITELVEKLPPSTK
MEWVRYKRQQHVVDLRTFSDFLSIIVSEATEATLYTDFHVDSRPNRDKKEKKSKARDHEGFLNAHIGVQSPSQRSTNQHN
IEPQQAIRKPCRGCNSLEHRTRSCEDFQRLTYSDRLKITEKWKMCQLCLNEHGQIRCRFKGHCNVGDCKERHHPLLHPPN
PPMALSTNCHVHNSEHHPIIFRMVPIKLHHEGRTLDVVAFLDEGSSYSLMESAIADQLKLKGAWEPILVKWTAGMSRLER
DSRSVDVSISATGSKEKYLLRNVHTVKELQLPEQRIRFAEVAARFKHLCGLPVADCLSGSPKVLIGLKHLHVYAPLESRI
GNPGEPIAVRTKLGWTIYGPQGGENMATGFAGHHTVGDITELDLQELLRRHFTLEETGLDVKVLPESAEDRRAKELLEQT
TMRVGKRFETGLLWRSDDPQLPDSFPMALKRVKSLERRLEKKLELKQNVERQIEEYQHKGYAHIATNTELIEAEPGKVWY
LPLNVVLNPKKPGKVRLVWDAAASVQGKSLNSELLKGPDLLSSLPSVLCPFRERPIAFGGDIAEMYHQLRIRSSDKSAQR
FLYRPNASGPPITYVMDVATFGATSSPCSAQIIKDRNAQDYAEEYPDAVDAITQRNKNDIFAVINKHYVDDYLDSTFTVS
EAIKRAEEVTYIHSNAGFHIRNWVSNSEEFQQHFGRKPENHIVHFASDKSSSNSMERILGMSWDTVKDVFVCTTALRDDL
QVYLTESKLPTKRVLLSVVMSFFDPLGLWAPFTVHGKIIVQDLWRNGCSWDEIIDEHSAKKWYRWIALLPSLQAMEIPRC
YFADVKASDYQDLELHVFADASEEAYGCVAYFRVLVKGEPRVALVSAKSKVAPLQYMSIPRMELLAAVLGARLAAFVKSN
HSVQVQRVFYHIDSATVLSWIRSDHRKYKQFVAYRIGEILTITNPKQWSWVATKHNIADVLTKWGKNGPPLATESEWVRG
PDILYRLDQEYSQRDLPPPGVVEELRAYHLFHEVSFHKALIDTTRFSRWTILVRSMACVFRFISNCHKRMKKQPIETLQA
SPKLVKLLKRTFPSIKSPLKREEYQMAENFLWKAAQQEGFPDEMKTLLKNNRLPQSKLHLIERSSPLYRLAPFLDANGVI
RMEGRAAHADFIPFEQRFPIVLPKGHDVTAKLLLHYHAKFGHANRETVVNELRQRFYVQNIRAAVLQVIKDCNWCKIHKC
IPVAPRMAPLPVQRLTPQIRPFSYVGVDYFGPVVVTVGRRSEKRWVCLFTCLVTRAIHMEIAYSLSSQSCAMAIRRFICR
RGTPLEIFSDNGTNFQAASKEFIQEIRCIEMECADIFTDARTRWNFNPPAAPHMGGVWERLVRSAKEALKALHNGGKLSD
EILLTILSEAEDMVNSRPLTYVPQESADCEALTPNHFLRGLPAGEREEANLPTSSAEALRDSYKRSQELADMLWKRWLKE
YIPTINHRTKWLAEQEPIAEGELVYITDGNNRRTWIRGIVEKVIRGTDGRIRRALVRTSKGVFRRAVAKLAVMELRSKSG
QIPGPEPELREGE
>BEL-611_AA#LTR/Pao 277-5535  [Aedes aegypti]
MSTERRIKALKLRLRSLMTSLNLIKVFVDDFDEDTQADEVPVRLENLIKLWSDYNTVQTELEALDEAALEAHLKERSQLE
STYYRVKGFLLAHNKAANNQNLMSPTHSEPQSLSSASQVRLPDVKLPVFDGKVENWLNFHDLYTSLVHSAVGLSNIQKFY
YLRSSLSNAALQLIQTIPISANNYPVAWKLLVDHYQNPARLKQTYVDSLFDFSPLKRESATELHSLAEKFEANVKVLQQL
GERTEFWDVLLIRLLSTRLDSTTRRDWEEYASAKGAVIFKDLLAFIQRRVTVLQSIQAKVTETLPLNQQKRSIQRAVSSH
GASQVSHRKCIVCSDHHPLYMCATFSKLSTDEKEKEVRRHQLCRNCLRKGHLSKECSSSSNCRKCRGRHHSQLCPNEPTS
SSTSKPSSPQQPNSTSSSNSDPPTTSASAAVDETISCATIGQNKKTVLLATALIILVDDNGVEHIGRALLDSGSECCFVT
ERFSQRIKVQRRKINLPISGIGQASTQAKQKFTSTIRSRVGDYAATVEFLVLPRVTIDLPATSVDTSTWNMPPGIQLADP
SFDSSSPVDIIIGAEIFFELFRVPGRIPLGDHLPALVNSVFGWIVSGKSSSGSPSSPVVANLATLSEVHQLMEKFWKIEE
IDSSTTYSVEEHSCEEHFRQNVSRASDGRYVVRLPFKENFLEHLSDNRRIAVRRFHLLQGRLLRNPVLHQQYKAFIDEYL
ELGHMHRIHEYDDAKVNHYYLPHHAVLREESTTTKLRVVFDASCKTPTGYSLNDMLMVGPTVQEDIHAITMRSRKHQVMI
VADIKMMYRQILVDSRDTPMQLIVWKENPDQPLETFELKTVTYGTASAPFLATRVLIQLADDEGTEFPLAASVLKKDFYV
DDLFSGGRNAPEVVNLRNQLDALLARGGFQLRKWASNDESVLEGIPPENRALQASFAFDPDQVIKTLGLHWEPANDCLRY
RIELPFETTIRLTKRHALSLIARLYDPLGLVGPVVTTAKVFMQDLWTLKDNNGTQWGWDQELPAEYCARWIIYQSLLPRL
NELRIERCVLLPDSDSVQIHIFSDASQIAYGACAYIRSTNALGLIKVSLLTSKSRIAPLKRQSIPRLELCGALLAAQLYK
KVKTSLQIDAQVFFWVDSTVVLHWLNESPSIWSTFVANRTSQIQLATQDCQWNHVSGVENPADCISRGMSADTILESNLW
WHGPEWLRRQQSQWPIPGAQLTNSPEALKEKRRTSVAATTSRSEPTFIDLLTEKHSDYQRLLRVVAYCQRFARNCQKLSS
ERVKTTFFIVDELREAETVLLRLVQQQCFAEEWKQLHKSQPIAMTSRLKWFHPFMSSEQLIRIGGRLGNTEGTYDCKHQI
ILPSSHMISILLARSYHIKHLHAAPQLLINLLRQRYWITGARKVAKLVVHRCVTCSRARPKMVQQLMAELPSSRATASRP
FTITGVDYWGPIQLAPIHRRASPRKAYVAVFVCFSTKAVHIELVGDLSTPKFLQALRRFVSRRGLCSDLHSDNGRNFVGA
AKELQELVRSKNHQESIGKECNTLGIRWHFNPPKASHFGGLWESAIRSAQKHFVRVLGPHTLPFDDMETLLCQIESCLNS
RPIVPLSDDPSDYEPLTPGHFLIGTSLKAVPDNDLSSIPLDRLQKWHRVQKMFQDLWKRWHLEYLSTLQPRAKWCNPPIQ
ILPDQLVVLRDENTEPMRWPMARILQVHPGSDGVVRVVTVQTPTGRYVRPVAKICLLPIASPTSSSDQAATN
>BEL-631_AA#LTR/Pao 38-6481  [Aedes aegypti]
MLGRTPIKTRSTTASRDGQPVGGSVRNVDGGNHGNHHCKACSGEDNTRMVQCDKCDDWYHFECVEVSQGVAYRDWNCPTC
LSASNEVKKKDSAKVTSSAVSTSAISNPSIRVTSVPLNLVPQNPTSLTALPNVTTSTHINASALVNVPSSTIFPPMSVID
NSSTLNPPNAYFSSSTCFAPNMLLPPSIFTLAGGTISHPHTIPQLNPSVVCAPNMFPEMTDIRQCLPSTSQPRLLPTSVT
ANVPLASSTIIPTTVPLVGQTSNELLKVPSNKPGKNAKQVFGETSSQHSGTSKRSTKHKQLELELKMLDEERKLQEEENR
RKREYLQKRYALLLEIASESSSVAEIEEDKNEDRVNEWIENGLTAGQVAGDQDPIPEQLRXNVNPQPPPPNSMPPICNQF
GRPRPARCEAVPLSAPRMFPTLATERYSNIPAHQPQTFLPQHQVVHSRTQRPNMSHQLDREPRIANSLGLGRSSLRYDMF
EHDEGNNLTRSQVVARQAVSRELPTFSGTPEEWPLFFSSFTTTTAMCGYTAEENLVRLQKCLTGKAFEAVKCMLMHPMNV
TQIISTLKMRFGNPEIIVHNLMAKISSTPAPKAEKLDTIIEFALSVQNLCATIEACQLEEYSYNVALLRELVDKLPTTIK
LDWARYRRNFAAVNLSVFSSWLYELAEDICPLAGASSDSKLQRSGKNNPAFLNAHAEDVEDEPKKPPHQSPSGQFKHAEV
TCVVCKCDCPTIDKCQRFYELGYNSRWAVVKEFGLCRKCLKNHKGSCKVQKLCGKNGCEFKHHQLLHNNQRDLVAAPKTE
VKSAASPEHREPNATRKFESECNIHHQITNKTLFRVVPVTLYGPDKHIKTFAFLDDGSSYTLMDATLATELEVEGKRSPL
CLKWTGNMGRSENDSIKLNIQISGTGNNVKRYWLHGVHTVSSLDLFRQSVDAQEMANHYKHLRGIPVESYQNAQPRILIG
MKNASLSYPLKAREGKLNEPIATKTRLGWVLHGGSDEDDFLLAYHGVQVCICTERSDEFLEKAVREYFSLEGLGVTKPDK
PLLCKEDQRALNILDGVVQTDDGHYETRLLWKYDEFRLPNSKPTALRRFHCLDSRMKKEPELAAALREKMKDYEEKGYIR
KISEAELQAWMQRIWYIPIFPVFNVNKPGKLRLVWDCAAKTGNISLNSMLIKGPDQLTPLNSVLYRFRENKVGITGDIRE
MFLQVRIAKEDQGCQLFLWKDNPNDETPSTYVSQVMTFGASCSPTCAQFVKNLNAEKYAGQFPRAVEAITKQHYVDDMLV
SVESEEEAVQLAKDVRSIHAEAGFEIRNWISNSPAVLQALHQEKTADKSLYVGSELGMEKVLGMWWCTNSDCFTFKLSPK
HDAMLLTGERKPTKREVLRTLMSIFDPLGLLSHVLVGLKILFQEIWRSAIGWDDEIPDNLYEKWENWLRILPKLEDVSIP
RCYRLLTSMSPNTLVQLHTFVDASELGYAAVVYLRFQQGSTIECAIVGAKSRVAPLKFVSIPRLELQSAVLGSRLAKTIS
EALSFKINERFFWTDARDVLCWLRSDHRQYSPYVAWRISEILDVTNVDNWRWISSQDNIADDATKWKRSPDLGCQSRWFK
GPEFLWRAADTWPCEPFSTNTTREELRANLLHHKDEFQPIFQTDKFSEWNRLLHVAATLIRFIANIRQKIAGIERNTGPF
SKDELVCASNVLYREAQSSSFTEEMDILMNRTSSRAIPKSSSLFTLNPFLDGERVMRMHGRISACQYASTDAQNPIILPK
DHHITKLIVKSYHQRYHHRNHETVLNELRQVFRIPKLRGVFRKVKADCQTCKIQRANPMPPPMADLPNGRLAAYTRPFSY
VGVDYFGPMTVAVGRRNEKRWGVLITCLTIRAVHLEVAHSLSADSCIMALRTFMARRGVPIQIYSDRGTNFVAANKELSE
ALREMDQQQVIQEITSQHTEWTFIPPASPHMGGAWERLIQTVKANLQKMLPMRRPSDEVLRNTLAEIENLINSRPLTYVP
VDDPDAPVLTPNHFILGSSSGLKPASRMDDRALILRRSWRESQREADLFWQRWLRDYLPELTKRTKWFSDVKAIEVDDIV
VIVDPDLPRNCWLKGRIIAVKQAKDGHVRSATVQTKMGIYERPATKIAVLDVRREELVDQKTGVPGE
>BEL-624_AA#LTR/Pao 16-6090  [Aedes aegypti]
MSTSNPTRQDALSTSLAACIGCKILDSNQKTVTCSKCYALWHGSCAGIPDGFDGPWRCNHCSTFCGSVAGSISSTKSTSS
ARLRLKQLQELKALEDKIQLERAERERRFLLEKHSLEAEAEAEETGCGSIRSSASRLRNRHRDVNTWVEATNIAKQSLQQ
TEGFEQPPVGVHTSTPVSDAGAIPKTHPVDTRVDDKQQQQVDQSQQNQLNVLNTPLGLPKHMLPPKKPSGILKPTLPAIP
SANAQLDAYASQNVGHYTSQPSTHAIPGSVFPSGIGTQCKAMFPSATATDFQSSQPTLPGLLTQQPQSNVIRSSIQLPHP
TTTVQSQYRYVPPSSIPGAIPVTTTSMFPSLRPLNQSEYVPWNQQASMQYMPNLVPEHSSQSTGGLISAQQLAARQVVSK
ELPKFSGDPLEWPMFLSAFESTTAICGIQPDENLARLQRSLVGKAREMVQSILTLPSAIPEIIATLRDECGRPEQLVHCL
LSKVRNAPPPNVNKLETIVTFGREVRNLVTYIEAANLQMHLANPMLLSELVAKLPPSMRLDWGLHSQRTQDASIRAFSDY
VSSLKTAACHVSLPSESIHADDSRRAKKEKSGFVNAHALEQEPNNSVSRWKEKLEAKPCLGCHQTDHKVRFCNKFKSLSI
AERWTFVEKNGMCQRCLVAHGKWPCRTKQPCGIDDCKDLHHKMLHPGKNTQASITTSPSPALVTIHNQKQSSTLFKVLPV
RLFGKNKSLNVFAFLDDGSNKTLLENCIANELGLDGEKQSLVLQWTSNVTRREAASKRVELDIAGIGNAHKYHLTDVCTV
EELGLPRQSLDYPELSKHFPYLQGLPVSSYQEAKPQILIGLADARLKLALKSRERRDGEPIASKTRLGWTVFGGRRSVPE
SVQVMVHEITESDENIHDVIKEYFDSENFGIIGARPPESPEDQRARKILQSTTKRTTTGRYETGLLWKTDNVEFPNSFSM
AERRMKCLERRLEKDPDLKKIVNDQLLEYLERGYAHIATDDEIQSADPRRVWYLPLGIVRNPRKPGKVRVVWDAAAKVKD
VSLNSMPLKGPDLLVSLPSVICRFRQRKFAVAGDVKQMFHQLQIRKEDRHSQRFLYRADPADPPAIYIMDVATFGAACSP
CSAQYAKNLNATEYQNTFPEAATAIIENTYVDDFLDSRDTADEAAQLVIDVREVFSKACFEIRNWQSNSEEVLSRVGEGN
PENVKRFSVDKTMDSERVLGISWIPETDVFVFNLQVRDDLKHLLYGEIIPTKREVLRVVMSVFDPLGFIATYTIHGKILI
QDIWRSGIGWDERILPRDFANWQRWIKLSSELSNVSISRCYFPNYAPESLESTELVVFTDASEMAYCCVAYFRIMDRGVL
RCALVSAKSKVTPLKPQSIPRNELNAAVMGVRLANVINESHTLPITKRTFLTDSKCVISWLRSDPRKYRQYVSFRVAEIL
DTSRPSEWKWIPTQVNVADKGTKWGKCGPSLDPSSEWFTAPEFLFQPSSSWPTKYPDSDENGEELRAVFAYHSTTDDCIV
KFENFSTFQGLLKRIAMVYHFIHGCRHRVRERTSSSTALLTQEDYMAAENGLWRMIQSEKFADEKVSLQANPGRSSNNQC
KLGKNSWMFKFSPFLDDNGIVRMDSRIDPEAAYFAYDFRNPIIVPREHYVTNLLISHFHQRYGHANTETVLNELRLKYYI
PKMRSTVKKVVNRCQWCRVYRAKPTPPRMAPLPQPRVSPYVRPFTFVGLDYFGPMIVKRGRTNIKRWVALFTCLTVRALH
LEVVHTLSAESCKMAIRRFLARRGAPQKIYSDNGTNFRGAAKELSDEINAIXREISGTFTNADTEWHFNPPAAPHMGGVW
ERKVRSVKEGLKVLSHKRHLDDEGFITLLAEIEMIVNSHPLTFVPLESPGQPVLTPNHFLMMSSSGVNAESRIPIQESTA
LRTNWKLMLHLTDQFWKRWIKAYLPTIARRTKWFAGVRPLKEGDLVIIVDESVRNGWQRGRILRAHLAPDGQVRKVDVQT
ESGVVSRPAIKVALLEILEEGKTT
>Helitron1_ZM_hel#RC/Helitron 442-5239 (2 introns) [Zea mays]
MRILRRVRTPVAGDKSLLDFPATVATANRQHRIQKMRRTLASAEQETYKDRSYYGGPSDECPHCGAVFWFQERVKSVSAV
AQRRLVYNLCCRGGKIVLEPYKCPPAPLCDLLRFDGDSRARRFLRQIRSYNSLFAFTSLGAVVDRSINNGTTPYVFKING
VVHHRIGSLLPSHGLRPQFAQLYIYDTEHEVQNRLGMFENEADVHDRPDPEVARLLLNMLDEHNKLVAAFRFAKERLDEE
GDQKVTLRLLGCNTRHDAQYNLPANGELAAVIVGDCSPSQYKYDVLVXAREGGLKHVSCLHPSYMALQYPLLFPYGDRGY
HLGIKYSDVGGGDVSCRKYVTMLEFVRHRSHYRLNEPNPFTCYGRLSNQLAVDAYSTIEASRLQFIADHQKELRCESVQG
ITDAIGRGLTSADSVGGRVIVPASFTGGRRYHVMNYQDAMAICRVYGPPDLFVTFTCNPKWKEIVDALRFEPGQQPCDRS
DIVVRVFHMKVDEFIADIRENKIFGPIRAVIYTVEFQKRGLPHIHCLLWLLGGRSETDACAIDAFICAEIPDVAIDPLGY
ALVDEFMIHGPCGDYNRRCPCMKNDRCSKKFPKTYQDETVIDAFGYTLYRRRNNGRFVVKGGVKLDNRSVVPYNMQLLKK
YNAHINVEWCNKTHMIKYLFKYVTKGSDRARIYFELTANTTNASPGPQIAPPNEIREYIDARYLSTCEALWRIFEFDIHF
RVPSVERLAVHLPAKNIVQYEPGADLQTLLLSRAAKKTMLTEWFETNLKYSDARHLTYCDFPKEWSWDVSIRCWRRRRLS
SAKIGRMYYVHPTAGELYYLRMLLMFVSGATSFVDIRTFQNTVYETFREACEARGLLEGDNEWNLLFDEAIVSASAFQLR
QLFVTIVVHCPVCNVRALFDKYWIYFTDDIHRGLREALGNPHYTAPHEQLLTLLSRKLADTFANSGANIADYDLPILSAC
GDEVFGNRLIDDELRPEPLLLCDHAAAAAVSQLNADQRFIFEMLIESALSCSPGLFFVCGHGGTGKTFLWNAILTHLRSR
QKIVLAVASSGVASLLLPKGRTAHSRFKIPFDLDESSVCGVKRGTMLSELIQRTSLVIWDEAPMTHRHCFEALDRTMRDI
LSEHKAENANIPFGGKPIVLGGDFRQILPVVRKGSRSAIVNASITSSPLWQHATVLKLRTNMRLSNPSLHGKERADMEQF
SKWVLDIGDGALPAVTRGDESEPTWVTIPEDLLIRTDGDAAASLISEVYPNLLERYMDPTYLATRAIVCPNNLTTDKIND
YIVSMLPGHGVQCLSCDTISKSSERIPDFDMLYPTEFLNSINAANFPCHKLVLKRGVTVMLLRNLNQTAGLCNGTRMLVT
EIGHRVLKCVVLTPSGVGEEVFIPRIALNTTDVKWPFTLQRRQFPIRICYAMTINKSQGQTLSTVGLYLDKPVFTHGQLY
VAVSRVTSRSGLRILIENPDGSCGSQTRNVVYREVLRAVDADPHPTS
>Helitron-5_SBi_hel#RC/Helitron 633-5039 [Sorghum bicolor]
MVLSPVETYPERSYYGGPSNECPYCGAVFWFQERVKSASAVARRKIVYNLCCKGGKIDLKPYRNPPRPLCDLLRFDGDAR
XRRFMKQIRSYNSLFAFTSLGASVDKTINNGTAPYVFKINGVVHXRIGTLLPKHGSRPKFAQLYIYDPEHEAQNRLHMFA
DDACAADQPDPDIAKSLLDMLNEHNQLVRAFRYARERLEQEGDQKITLRLLGCNTRHDVQYNLPSSGEIAAIIVGDYAAD
EYTXDVLVHDKQNGLKHVSYLHPSYMALQYPLLFPFGEHGFHLGIRYSGIDXDDGGTGRKYVTMLEFVRRHMHYRLNEPN
PYTCYGRLSDQLIVDAYSTVEGSRLKYIADHQTDLRSETVQXISDAIDKGLTNADSVGKRVILPASFTGGRRYQVXXYQD
XMAICRVYGPPDLFVTFTCNTKWRXIADALRFEPGXQPCDRSDVVVRVFHMKVDELMADIREGRTFGPVRAGKAHNVSCS
LXSSYTYLMSGLSFAVLYTVEFQKRGLPHIHCXVWLAASGSEFSASTVDGFICAEIPDLSTDPLGYALVDEFMIHGPCGH
YNKKCPCMREDKCSKXFPKSFQXETTLDDFGFTIYRRRDDGRHVVKNGVRLDNRNVVPYNLHLXKKYNAHINVEWCNKSN
MIKYLFKYVTKGNDRAKVYFEVTAKTVNASPGPQXAPRDEVXEYMEARFLSXCEALWRAFEYDIHFRMPPVERLTVHLPG
LNHIRYEPGADLRALLDSSTAKNTMLTGWFEANSKYLEARHLTYCDFPKEWSWDASKRCWRPRTPCAKIGRIYYVHPAAG
ELYYLRMLLMIVKGATNYADIRTFNNKVYHTFREACDARGLLEGDNEWNLLFDEAIVSASAYQLRQLFVTVVLYCSVGDV
RALFDKYWLHFTDDIHRRLRDSLGNPHYVVPHEQLMSLLIQKLTHVFASSGGNINDYNLPRLMTHYDSMYDNRLINEELD
HEPLMLSMHASSLVSQLNIEQRHVFDTITSRVLSGSHGFFFVCGHGGTGKTFLWNAIIASLRSEKKIVLAVASSGVASLL
LPRGRTAHSRFKIPFDLNDATTCSVKRGTMLAELIQLAALIIWDEAPMTHRRCFEALDRTMRDILSEHDPTKSIVPFGGK
PIVLGGDFRQILPVVRKGSRSAVVDASITNSRLWQHVVLLKLQTNMRLLNPSLEGTKRDELERFSSWVLSIGDGTALAEK
KGDEREASWVTIPDDLLIHTDGDKIAAIVSEVYPDFLMNHNNPEYLASRAIVCPNNITVDEINDFVVSLIPGDSVHYLSC
DTISKSSEHIPDFDVLYPTEFLNSINVNNFPCHKLVLKKGVIVMLLRNLNQNMGLCNGTGLLVKELGQRLXRCVVLTGSX
INEEVLIPRIALNTTDLKWPFTLQRRQFPVRICYAMTINKSQGQTLSRVGLYLKKPVFTHGQLYVAVSRSTSRGGLXILX
ENTDGSCGSQTRNVVYREVLDAAYAASA
>Helitron-3_Mad_hel#RC/Helitron 1363-5783 via genewise with Helitron5_hel, 1 intron (2735:2846) and 3 frameshifts. [Malus x domestica]
YVDFGPRNSQCQYCGALFWSTERLKTNVSSIRRPQFTACCMSQKVKFPPVKPTPAYLEHLLNSTNSQESSHFKTNVRLYN
SMMAFTSMGAKVDASINKGQGPYVFKINGQVHHLMGSLLPPEGESPKFAQLYIYDTQNEINNRMSCFPHSEESSKVDEQI
VSGLIKMLDECNELVQLFRVARDRINEQSTSSLRLRLHGTPSNHDAQYNLPTCDGIGGLIVGDIGQFHTERDIIxEHRAT
GLQRITKLHPKYMALQYPLLFPYGEDGYSKGLPWNPDFRGKKPKTGGVSMRAFVGYQIQDRPGQDSTLLKGGRLFQQYLV
DAYATLEEDRLDFIRTNQNSLRTERLKGIHEALRKGNASGSDIGKRIILPTSFTGSARYMINNYQDAMAICRHLGNLDLF
ITFTCNAKWPEIIEDLRERPGCRVEDRPDIVSRIFKAKLDHMVKYIKSGKPFGKVESVIYTVEFQKRGLPHCHILVWVSK
EYKCHSPSDVDSIISAEIPNQEFDKDGYDVVALYMIHGPCGLANEKSPCMKEXKCLKRFPKHFSNETTFESDGFVKYKRR
EMENRFVVKNGVKLNNAFVVPYNRELLLKYQAHINVESCCQSMLIKYLFKYITKGVDRARAVFEDQEFDEIVAYLNCRYL
CPYEAVWRLLQFHIHFREPAVQRLCVHLPSDQNVVFQEDDNLNYVVNQPNLESTMLTKWFEMNAQDPDACQLSYVEFPSK
YVWNSENKEWTRRKSGRCLGRVAYVHPAAGELYYLRLLLNYQKGGFCFDDLRTIKGVLQPTFQAACNSLGLLGDDKEWNN
AMLEAVVTASSYQLRQLFVTLVLFCDVADPTTLFEAHWKMMCDDILTKMVNAFGLQDMSKYEDELRNSLLYELEKLFVVS
NSSLSKHHLPVPNKDLMDRLKNRSLREELNYDTESLKEQHSLLMAQLNQEQKIVYDSVIEVVDGNKPGLFFVHGHGGTGK
TFLWTTIIAKIRSENRIVLAVASSGIASLLLPGGRTAHSRFKIPISITDCSLCEIKKGTHLAQLISNAALIVWDEAPMNH
KQCFETLDRSLRDVLKGSKPGFDDLPFGGKPILFGGDFRQILPVVPNGTRADIVEASLTxSYLWxYLTVFXLKENMRLSK
TGLNEQEKQELADFANWILQIGNGNVANSILSTDEESSWVEISKDFLINFDDDPIENMVSAVYTDFETNFHDVSYLKERA
IVTPRNNTVTEINDFMLTMVPGEGRTYLSFDSVSSSTENVENLDILYPLEFLNQLDLPGLPHHKLALKVxMPVMLLRNLN
QSCGLCNGTRLVVMQLTDRIVEAKIITxSNIGDXVYIPRIITESSENKYPFTLRRRQFPxRICYAMTVNKSQGQxLKIVG
LFLSQTVFSHGQLYVALSRVTSKQGLKIVIAHDSDMPYGYxKNIVYKDVLNCLHEGVLICVCPFIFFSLFVYFSKF
>Helmet4_hel#RC/Helitron 51-5345 (4 introns via genscan) [Medicago truncatula]
XNKTSKPITTHKRTNTKSIHSTHRIQHKSDHVQTYMDLGHPNFECEKCGSTMWYNERADKPRRPRNPTFSLCCLKGDVSL
EFLEQPPDYLKELLAYKGGRHSVKFREKIRAYNSIFAFTSMGAKIDNTVNLRPGPYVYKISGQNYHRIGGLIPGQGKQPK
FSQLYVHDTENEIQNRLSSLNGGKTARDLDADIVRRLKDMLDMNNSVAKLFRMARDRLSAPDNKEVRIRLIGTRSNDSRQ
YTTPTATEIAGLIVGDFGESNGRRDIVIEHKTDGLQRIKEYHPKFMAMQYPLLFPYAEDGFHLDIYYSQNHAKRKKKKKR
KKVTLREYYAYRIQQRPCEANTLIIGGRLFQQYVVDAFTAIEEERLRWVRQNQTVLRTDLYRNVCDAVVRGDTIAAATGK
RIVLPSSFTGGPRYMVQNYQDAMAICRTFGNPDIFMTFTANPKWPEIQYMLQKIPGQSVDDRPDIKTRVFKMKLDQLMKH
IVEGQYFGKIISAIYTIEFQKRGLPHAHILLWLHPSNKYPTPEDIDKIITAEMPSKEDDPECFNAVKQFMLHGPCGDANI
NAPCMIDGICSRKFPKSFFDETTIDRDGFPTYRRRDDGRHVKKGDINLDNRYVVPYNRGLLLAFQAHLNVEWCNKSRAIK
YLFKYLHKGPDRAIMVIEDNVLGNRSTNATHITMVDEVKTFLDCRYVSACEACWRIFNFDIHYRNPAVMRLSFHLPEEHS
ITLRDSEQLSDVISKEGVEHTMFTEWMLMNSMSSEARTLTYSEFPKKFVWDETKKKWKKRKAGRTIGRIYYAHPTSGEKY
YLRILLNIVHGPTSYEEIKTVGGVTYQTFKETCNALGLLNDNREWNDALNEASQWATGTQLRELFVTILLYGEVADIGKL
WETNWKTLSDDIVYKKRILFQHSRLELNDEQIQSYCLIEIDKILVRAGSYLSDFDGMPLPNSESFEATENRLIVEELSYN
VDDLKKEHERCHPLLNEQQIDIYNNVINAVNTNIGGLYFVYGHGGTGKTFLYRTIIAKLRSEKKIVLAVASSGIASLLLP
GGRTAHSRFKIPLEIYEDSTCSINQNTHLADLMVQTDLIIWDEAPMTQRYAFEALDRTLKDIIGFKFPDRAEQPFGGMTV
LLGGDFRQILPVIPKGRIHDIIQSCINKSFLWDYCTIFSLSKSMRVRNTTSTGKEHDVIREFNKWLLQLGDGNIQAQSRR
GEDFASWTTIPDQYLIPPMGDPLKQIVDNTYPELKSHLWDEEYFRERAILTPLNETVDEINNYIVQFTDGETKQYRSSDE
IDKTTDNISDQELMYPVEFLNSLNINGFPRHCLELKEGMPIMLLRNINPALGMCNGTRLIITHLGERVIEAKIITGSNVG
SKVLIPRIVLTSNDSKWPFLLRRRQFPIKVCYAMTINKSQGQSLNYVGLYLPRPVFSHGQLYVAFSRVTSPEGLKILIVE
RDENYVQYTKNVVYHEVFSGLPQCKYI
>GB:AAC82605 gPr60 (gypsy)  [Drosophila melanogaster] 
MFTLMMFIPLVVANARITDFSHANYIPVLDGDVLVFEQRDLLKHSSNLSEYASMIDETQKLSESFPHSHMRKLLEVDTDH
LRTLLSVLKVHHRIARSLDFLGTALKVVAGTPDATDLFKIKITEAQLVESNSRQIAINSETQKQINKLTDTINKVINARK
GDLVDTPHLYEALLARNRMLSTEIQNLILTITLVKSNIINPTILDHADLKPLVEQDTPIVSLIEASKIRVLQSENSIHIL
IAYPRVKFSCKKVAVYPVSHQHTILRLDEDTLAECEHDTFAVTGCTDTTHFTFCERSRRETCVRSLHAGNAAQCHTQPSH
LREINPVDDGVVIINEAAAHVSTDGSPETLIEGTYLVTFERTATINGSEFVNLRKTLSKQPGIVRSPLLNIVGHDPVLSI
PLLHRMSNENLHSIQNLMDDVESEGSPRLWFVAGVVLNFGLIGSLALYLALRRRRASREIQRTIDTFNMTEDGHKLEGGV
VNN
>Pr_Helitron1_hel#RC/Helitron 1417-5260 via tfasty with Helitron2_hel, 5 frameshifts and 1 stopcodon.  [Philodina roseola]
MPPKGRISLGRSTPASRRMTAARAAETPEQVESRRGDDRTRRAVSRAARWGFMEGEAFRYDPANSYDSHPQLYIGQMNNI
CPHCNALKWPGEAAGMCCSGGKVKLQPLRCPPEPLESLLSGNTPISKHFLENIRKYNSCYQMTSFGVTNEVCESGFIPTF
KVQGQVYHCVGSLLPPENDQHRFLQIYFMGDALQEAKQRCSNLPGVRxEIVMDLQQMLHQCNSYVHIFKSPLQRMPSDAY
KVVIRADKKPIGEHAGRFNAPTTDKVAVVIVGNELDRREIILEKRNNQLRYPLLFPEGEDAYHFLIMQTNPTTGMPIEGK
KVSAMDFYGYRIMSDLELAIIFGPTRCWMYSAEWQKRGLPHAHILVWLRDKIKSDQIDSVINGELPDPQRDPRLLEIIVK
NMVHGPFGNVNPNSLCMKDGKCTKRYPRQLLQDTQTGENGYPLYRRRRPDDGGFKTKINMKIGNAVQEIEIDNKWIVPYC
PLLLRTFQAHINVEYCNSVKSIKYICKYVNKGSDQAMFGLEKDGRAIDQVQRCQLGRYISSNEAIWRILDFPIHIRYPIV
VHLAVHLENGQRVYFTKDNLHERVSEPPQTTLTAFLQLCQSDDFAKNLLYCDVPKYYTWNASEKAFKRRVQGSAVPGHHN
IRETDALGRVYTVHPNNFECFFLRLLLHTVRGPTSFEDLRTVNGRMCATFQEACQLRGLLENDAQWDLTMAEAATVQSPG
KLRNLFVILLITCGPANPRQLWESYKESMTEDFYNKLADEILESTQITLLIHMFNQTLIFLEDKALGMAGKDLTQLGLPT
PERNHGDQLSREMLRETSYNVDELREYVLENEPLLVSDRRAAYNAILERIDRKTGGIIFLDASGGTGETFVINLLLAKIR
KQSKIAVAVASSGIAARLLSGGHTAHSTLKLSLNLTHCDALCNISKGTGEAKVLQECELIVWDECTMSHRQALEALDRTL
QDLRGNGKQMGGGGRGVLVLLAGDFRQTLPVIPRGTMADEIKACLKSSYLWRHVITLQLKTNMRVHLQSDVSDGQFAQQL
LAIGDGKFPVDAISGLIKIPDNFCNVVESIEKLKNSVFPNIQHHFNDHKWLCERAILAPKNNKLPGETKSYKSVDTVTDV
NEAVQYLTEFLNSLEPPGMPPHNLVLKVSSPIMFLRNLDAPRLCNDTRLSVKQLMPHVIEATILTGCAKGEDIFVPRIPM
IPTDMPFEFKRLQFPVQIAFAIAINKAQGQSLKVAGINLESPCFSHAQLYIACSRVGAGKNLYVFAPDAKTRNVVYQTVL
Q
>Helitron-2_AAe_hel#RC/Helitron 420-5532 via genwise with Helitron-2_DVir, 1 intronlet (814:868) [Aedes aegypti]
MTEVGPSSPTSDEPNLERADREYCKRFIDNQFGFACSVCDRLWFLNDLKPITEAAGKVLLDAGHFDSVTGFKVCQTCRSS
LQRNSVPNLSTSNGFKYPPFPPGLPPLDPITERLISPRLPFMQIRRLRRAQGSYTIIGQVINVPVDVDEMVTVLPRELED
DYAFNVCIKKHLIHKSNYLSGFVKKSVVKAWLEYLITTPLYRREGIIFNQERLRAFINGPQSATSGGEEMIQLELIDVNN
DAELLAGQQQTVMWNEDKCLELAPAQNRQPVSIVYDDNAEELSFPDIYLGYPRTFRAGTRVTPYMKATSELRRSDRRGTK
PNHLLYMAMKILRLRVAEGLQNVFKNIGTVDITRGQISDRRFVDELMERNLSFMKSIPNSVQYWYLRKQDLFAMIRQLGK
PTMFLTLSASETQWPLLLKQLHKLSSEYNGIDLSDPLQELNAQQRATLVNDDAVTCCLYFNKLVDVLMGILSSPRFSPFG
KHYVVDFFKRIEFQHRGSPHAHIMLWLANDPNETVSEHMPATMELIRKVCSISAIHLSETIDKQIHSHTFTCYKRNEKRC
RFNIPYWPMNEERTLVPLSADDSRRDRLRKRASEMRNILETKAFDTLEEFLADCRCTYEYYLDVLRSSIQRPTIFLKRSM
NEMWTNPFNPWIAEKLRSNMDLQFILDVYSCACYLAGYVNKSNRGVSGLHRELINLQQQYPDQDYAALLKKVSLKMLNSV
EMCAQEAAWVLLRLPMSEASRKVEFVPTMWPQERVRSRKQFKQMDEEEIDEDSTDIWTKNIIQKYEEREDMDDICLADFV
AWYTPCRGANSYKRRSVPRILKWRGYSMNELEEYKRESVLLFLPFRNEHCDILDGTKFLQLYEINEADILRKRKEYDRDL
NLEQTVEEYLRTCENEVDGEHENAATKKHDEFVRTISMIPNDDDIEYLPTGALNAVIRKRTNVMSKEDYCAMVRATNVEQ
RDLILHVIDGLHSYNEINKPLQTFFTGPAGCGKTFTLRILMETINRFSQAHNAQKNAYVACASTGKAAVAIGGTTVHSAF
RITMSRQKNSKLSFEMLQMYRNAFSNIKAVIIDEVSMIGADVLNTIHTRLQDITGNYDEPFGGITIIFCGDLRQLPPVNA
RAVYKPTGNSFHGAVLWQVLNFFPLVKVMRQSDVEFSSILTKIGNGQKMTADETKLIESRFRTVEWCKQNVPGAIRLYHR
NMDVEQYNNEALTDQDTLECTADDVFAGYRDAAQLASSRIKLYKMSVVETGGLPYLLRLSVGMPYMITTNVDVEDGIVNG
AIGELKYIEKDEDDCIVKLWFKFENEVIGAALRIKSRPAVYSRPGILQTDWTPISKRSASIKLSGIIKCKRIQFPVVSAC
ALTIHKSQGGTFPEVVYDYDKSQDQQLVYVGLSRVTSLQGLFLTNSTNSFKFHHAKGSNSPKMVDLRNELQRLGNHRLRT
LGDELREILDHSGPACTLMSINVQSLNAHAMDIATDQILTSVEFLALSETWLDDHSSVDIAGYSCINQFKRPGVRAGGVA
IYQKDTAFNVAVPHTIQKISEEYDAMLGVADQVGDICAASIMVMDIKVLLITVYISPGTTVQDTKMFLIRNLFNYVKQDT
PIVVTGDFNIDVSKQENIKFVDFMIKHFNLKLANRLNEATTLGGSCIDLTFIKNISVECSRYCSYFSYHRPILSILTIEA
PELSNI
>Helitron4_OS_hel#RC/Helitron 2617-6830 via tfasty with Helitron1_AG_hel, 1 frameshift and 1 stopcodon. [Oryza sativa]
HVLKPTANCKHCGAKKFQYETNGFCCRGGKIKLSNLETPPELMRLWSSMDSDATHFRDNIRFFNGHFSFTTLGVSLDERY
TNMRSGVYTFRAHGQIYHNIHSFGQRDNAPEHLELYFYDDDPSLNHRFRRSPSLDQEVVRRLVEVLRGNPYSQTFRSLAQ
ADDLEEYCVTLNLDNRLDQRRYNVPVTSEVAAVWVEGNELRTHFERSVVLYGNNNTKYSIQSYYGCYDPLSYPLFFPKGE
LGWHPEIPKVGVSIEDVIASRGNNHADSGYHFHPCIASSSFFMxWFTSLAAYDIFALILCADSNSRLCVSVRDYYCYKFQ
MRRGIFNPLLYGKRLFQQFAVDMYIKVESTRLDFIRRHQVEIRADLYKGVVDSIHAGESRASQVGKRTVLPASFIGGNRD
MKRRYMDAMALVQKYGKPDIFLTMTCNPNWEEIIGNLEPGQTPQDRPDLIVRVFRAKLEDLKKQLLEKHILGKVIAYAYV
VEFQKRGLPHAHFLLIMDGKYKLTSPEQYDCIISAELPNKHKYPELYEMVVKHMMHGPCGTLNRKNVCMQDGSCKNRYPR
AFNAVTINGKDSYPVYRRRDNKRCAKVRKQMLDNRWVVPYNPYLLRMYNCHINVEVCSSIKAVKYLFKYIYKGHDRASVT
LGEADSNGNIDEIQQYRDARWVTPPEALWRIYSFDLSKVHPPVKQLQLHLPNMHMVSFRAGQDLHDVVERNGVEKSMLTE
YFEANKVNEDARGILYKDFPEAFTWQAGPKVWQRRKRRITQIGRIVTAHPAEGERYYLRVLLTHVTGATSFEHLRTVDGE
VCSSFREAAEQRGLIEADNTLDECLTKAEVFQMPSSLRRLFATILVFCEPSDVLGLWNKHLEGMLDDYRRSHTCPRTIEQ
MVLLDIRNMLQSMGKEITSFPLPEIDESYDTSGSEPREIFEESTIEVDHGHMDLSSSLNPEQRCAYDEILSAIEGGQGGL
FFVDGPGGTGKTFLYKALLATIRGQGKIAVATATSGVAASIMLGGRTAHSRFKIPLNIDDGGVCNFTKQSGTAKLLQRAS
LIIWDEASMTKRQAVEALDRSMRDIMDRPDVPFGGKTVVFGGDFRQVLPVVRKGTRPQITDATLRKSYLWDCMRQLRLVT
NMRAQNDRWFAEFLLRVGNGIEEACDDGYIRLPDEICVPCTGNDDDLNNLIDNVFPMLDANLADPNYITSRAILSTRNEY
VDQINMKMIDRFRGEEMLYHSFDRAEDDPHNYYPPEFLNSLTPNGLPPHILKLKINCPVILLRNIDPANGLCNGTRLVVR
GFQRNTIDAEIVLGQHAGKRVFLPRIPLCPSDDEMFPFRFKRKQFPVRLSFAMTINKAQGQTIPNVGVYLPDPVFSHGQL
YVALSRATARMNIKILAVQSKDKSHRSMSRGTYTRNIVYREVLTS
>Helitron1MT_rpa#RC/Helitron 956-3525 (8 introns, predicted by genscan; C-terminal chunk may be missing) [Medicago truncatula]
MNKGKKIAITRPYDNVKDVNDSKDVWSLAVRVMDLCKNDSRLRQDIFMQNDMIQLTVPYEELAKWKEILKENNTYTMLNF
KVLKNDVAVKASTHPFRLAVSGATIIKPVDFPTIPLASFRFKDFGEILAGNYRNDLLIGIYPLCVTNTWSGTKVIINAEI
PEIAEFKTRFAELPIDDVNASQQLSQLTQGSQITQQGDIMNKAHFLTLSEVNHVMHETICVTIAEIKKINANKYGWIYDG
CNFCTKGVRMDNGQLKCRGNHINDEAKPRFRVEVEAVYKNDKAKFLLWDNDVASIIGMSAQELKEQLVEKVFKIKACPES
SPYSVIQISDNEGLLKNLEKQFGLGEASSKLALLDEVKVDEVKESQELVVDTLNTQSLCDETDPSCSSATPPPKRNSQED
VDWVGSTQDVEATQLSSTKLAKQPKLEPKN
>Helitron5_hel#RC/Helitron ATHEL5p; multiple exons [Arabidopsis]
MKNKQDSSSPETNIDSNPSKRTRFQSIETPQSQITHSTTADTNATVPLTSAFSRVFKDITNLGYSSVGSFLTPSNNQQSY
SAKKTHSTNIGSTVVSGLASMVQANSRHMKQSQAVVFKDMTNLPSMGLSSATGKGKASQNESTTSCMFFHKQTTLQTEKD
RFPRKNLQNDFENAFHSPITQGQSSATINNDFHCEMSDDESMPDFNYDSSSTNATDEDQHYYLSPTEDDTDDESTISIPV
ADPSSDICQNNANPTEPTTPHIAKCAEHEKFIATLKKTAAKAAANPNLPQPKKRGRPRLNKDTTNSAETATKSAYLDHGD
ATYKCNYCGALMWFAERINKKQQNKSPTFTLCCGKGNVKLPLLKDSPALINNLLTGDDALSRNFRENIRIYNMIFAMTSL
GGRVDNSMPKGKGPNMFRLQGGNYHLIGSLKPNPGDYAKYSQLYIVDTENEVDNRATVINKGKGRRNTPAKQKLKKEVIE
ALIEMLNKVNPYVDKFRQARERIQDDNDEPFHMRIVADRKGVDRRTYSMPTSSEVAALIPGGFQPSMFDRDIVLEEKTTG
HLTRISQIHISYLALQYPLILCYGEDGYTPGIEKCLPNSAKKKKKKCISMRQWFAFRIQERPNECKTLTRSKRLFQQFLC
DAYTTIESNRLSYIKFKQSKLRCENYNSLKKASEAGTTSMNEEGNQVLIPSSLTGGPRYMVQNYYDAMAICKHYGFPDLF
ITFTCNPKWPEITRHCQARGLSVDDRPDIVARIFKIKLDSLMKDLTDGKMLGKTVASMHTVEFQKRGLPHAHILLFMDAK
SKLPTADDIDKIISAEIPDKDKEPELYEVIKNSMIHGPCGAANMNSPCMVEGKCSKQYPKKHQDITKVGKDGYPIYRRRM
TEDYIEKGGFKCDNGYVVPYNKKLSLRYQAHINVEWCNQSGSIKYLFKYINKGADRVVFIVEPVNQDKTTENATSGEPPN
STEKKKDEIKDWFDCRYVSASEAVWRIYKFPLQDRSTAVQRLSFHDEGKQPVYAKPDADIEDVLERISNEDSMFMAWLTL
NKNNDVGKNGKRARELLYSQIPAYFTWDGKNKQWVKRIRGFSLGRINYVCRKMEVEYYLRVLLNIVKGPMSYDDIKTFNG
VVYPSFKEACFARGILDDDQVYIDGLHEASQFCFGDYLRNFFAMLLLSDSLARPEHVWSETWHLLAEDIENKKREDFKNP
DLKLTLAEIRNYTLQEIEKIMLRNGATLKEIQDFPQPSREGIDNSNRLVVDELRYNIDSNLKEKHDEWFQMLNTEQRGIY
DEITGAVFNDLGGVFFIYGFGGTGKTFIWKTLAAAVRSRGQIVLNVASSGIASLLLEGGRTAHSRFAIPLNPDEFSVCKI
TPKSDLANLIKEASLIIWDEAPMMSKFCFESLDKSFYDILNNKDNKVFGGKVVVFGGDFRQVLPVINGAGRVEIVMSSLN
ASYLWDHCKVLKLTKNMRLLSGGLSSEEAKEIQQFSDWLLAVGDGRINEPNDGEALIDIPEELLIKEAGNPIEAISKEIY
GDPSELHMINDPKFFQRRAILAPTNEDVNTINQYMLEHLKSEERIYLSADSIDPTDSDSLANPVITPDFLNSIQLTGMPH
HALRLKVGAPVMLLRNLDPKGGLCNGTRLQITQLAKQVVQAKVITRDRIGDIVLIPLINLTPSDTKLPFKMRRRQFPLSV
AFAMTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDGNMQKQTTNVVFKEVFQNIV
>Helitron-1_DK#RC/Helitron 3-5538 via tfasty with Helitron-2_DVir, 2 frameshifts. [Drosophila kikkawai]
RDAAAHALARQDSEERRRQQVQNTLSRSNRRAQEENRRAERARDAEVHRIARNNPITRAREQQRNTMHHRNTRLQRRLRE
QQIQEMAEERLLTYRSISQNRQAESARQSQRNIASRAELSTDERQDQRERQRQRNRATAREQYRRNIKDGPTECCVCCGG
TWFPSQVKWFNKISISAKYPALDVDNAFYLSRKFPSPSGKYQFCSTCRQSVSKGKLPSLCLSKGFDFPDIPECLKNLTCL
EERLISPRIPFMRIISLGYERQCGIRGAVVNVPISVPDTVNALPRSFDSTHVIQVHLKRKLEYSHNFMTETIRPARVLEA
VRYLVNTELYRKHNIAFNGSWLTQMGDREEIPFIADEADREEVEQLLRQLPNSQLNRPEEDLNPGGHETLLENNDTALQR
IALAPGEGRLPTNLTLDEDAEELSFPTISCGAVFKAKTTYAKKARSQIRFYDRRCAVVPKVLYMYKFYEMQRIQNSISIA
LRKKSGSVTAANVMDSSFVDNLVQHDDGYHILKGLRSAPAHWEAEKKKVIAMIRQFGLPTFFITFSAAESKWNELLVTLS
RLLDNRNITEDEAASLSTAEKARLIRSDPVTCSRYFDFRFRQLIKLFKSSEIFGEFTLVHYYWRIEFQHRGSPHSHGMYW
FSGAPKLEGPENSDQVVSFIDRFITTTGDDPELQEVIQYQRHKHSSSCLRELRGQEFCRFQMPYPPMPETMVLFPLEDNE
PNVEHFKEMFKKIKELLKSTSDEEAAVFNNFENFLTHLQISFEEYKFAIRSSLKKPQVFLRRKFSDRLVNAYNRDILGLH
RANMDIQFILDAFACCSYIINYINKSNRGVSQLLREAMTEISHGNISVKRKLQHLGSKFINATEISAQEAAYNILGLHMS
EASEGNIFVNTCHPDKRVRIVRSNRELEQLPGNSTDIFEQNLLDRYVQRHGDLESICLAEFAAWYKFSKVNAPSEPSNED
YDEAIDLELNEQNPISNQSYQLLDGTGSVKRRKHALILRWVRFSINSSPSDYFREHVMLFFPWRNEETELLSNDNEMTFR
NNHEIIKRNKEQYDVFDDMELERVLQDLQNFEREDNGLLPQEPASQYLDEEFRALAVPNVGQNVNILQDDNAVNNTEDGE
LQLIRLPPLVSDDNLCSLSRSLNAKQRQYYAHVMHNIAAKKTFYEYVGGGAGVGKSRLISTIYQSITWRANKLPGATDSA
KVLLCAPTGKAAFGIGGLTLHSVFSLPVNQTSGPLRPLSNDSINTMHCKLIDLQLIIIDEISMVGSKTLGYLDQRLRQIF
RSQDVVFGGKSIIVFGDLKQLCPVGDRWIFLENISNPYNILAGTNLWSNFRYFELTEIMRQRDDHAFALALNNMSEANMT
DADVVLFRQRVVTPNDVPDDAIHLFASNDEVNQYNALKLAQIATEEFVSTAIDTVKSANMSVRNKETTLRNAQNMKTSET
QGLPYILHLKTTAKYMVTVNIDTNDGLVNGATGQLMQIDNCMVNNVRLVTKLWIKFSDPTVGAMARSKVRRNDHPDWTPI
EKTARVFQCGSSGHSSVDRKQFPVVPAEAITIHKSQGATYSKVAVHLKRGIKRASLYVGCSRATSASGLFLLGDFVPPTR
FGATNVQAELESLRGEKALTTQYELLINGDNAISMYYHNIESLRAHREDIANDNIICSANFLCFVETWTLPQEEYNLRDF
DIIRRIDNNRLNGIGKNGILIYAKQSISSNVQFLFETKKSPSPRATYQSIVFKYLDTSFIIVYRSPGFPIARFRNEIKSE
VEKVRRMDNNKVVILGDFNICRSSASDVLEEFLNGHNLLSLNNSATTKHQTQIDWIFSDSRVPEAVALTYKTPYSHHDGI
FFKYSL
>Helitron8_OS_hel#RC/Helitron 1785-6668 (4 introns) (Helitron5 protein >90% similar) [Oryza sativa]
MDRVRRVRASRQRRATNVLSQQSAMHIEHAIVPLGQPHQESRCKRKCSLMDFAPQLAKLNRQRRSLLRSKMDPSVPLANV
DANHTARANGSSSRTDKEYIRLLKASYPDRSYYGPPTYECPYCGAMFWYQERVKSASAISKRKIIYNLSIDKSINTGNAP
YVFKINGVVHHRIGTLVPSCGSPPKFAQLYVYDPENELQNRLNIFENDGDNSDKADPEIIRALSSMLDAENTLVQSFRYA
RERVIQHGNQQVTLRLLGCNAKDDVQYNLPTNSEIAAIIVGDFSAKEYKFDVLVYDKGRGLCQISPLHPSYMALQYPLLF
PYGERGFHLGIKYSNYDGIGKKYVTMPEYYRYEMHYRLNEPNPFTCYGRLSDQIDVDIFSTIETNRLQYFIDHQKELRSE
SVDGIVDAIDKGVTDGDSVGKRVILPASFTGGRRYMVMNYQDAMAICRHWCGTHQPLFLMITVLYTVEFQKRGLPHIHCL
VWLAAATADVSASIIDGFICAEIPDYDTDRLGYELVSEFMMHGPCSDANKKCPCMKNDKCSKHYPKDFQDETIVDESGFT
IYRRRNDGRSIMKNGILLDNRSVVPYNMALLKKYEAHINVEWCNKSNLIKYLFKYITKGHDRARIYFETTGKTQNASPNH
DLAPRNEILEYMDARFLSTYEALHRLFEFDIHYRVPPVERLVVHLPGKNFVRYEKGADLRAVLESPGAKRSMLTEWFETN
KKNSKAHSLTYCEFPKEWTWEPSSKTWHERTPAPKIGRIYYVHPTAGELYYLRMLLMIVKGAQSYADVRTYDGVVYGTYR
EACEARGLLEGDNEWHLLFDEAIVTASSAQLRQLFVTVLLYCSVGDVRSLFDKYWLYMTDDIHNRLKKALDNPHCVIPHD
HLLNMLLHELIAVFANSGGNIKDFNLPHPSSVPHVLGTNRLIDEEITIDPLMLAMHADSFVQQLNNDQITVFSTICSRAI
ANEPGFFFVSGHGGTGKTFLWNTIIAKLRSQNKIVLAVASSGVASLLLPRGRTAHSRFKIPIDIDETSICNIKRGTMLAE
LLAETALIIWDEAPMTHRRCFEALDRTLRDILSETCPSNSIVPFGGKPIVLGGDFKQILPVIPKGSRQAIINASITNSEL
WKHVALLSLNINMRLLNPMLPDNQKKELHDFSQWVLAIGNGTLPMTAKEGENYPAWITIPDDLLVMTSGDKIAAIVHEVY
SDFLTCYRDIEYLASRAIVCPTNTTVDEINDYIIGLVPGDSRVYLSCDTISKSSEQIPDFDLLYPPEFLNSINATNFPTH
KLVLKEGVVVMLLRNLNQSIGLCNGTRLLVTVLGDRILQCIILTGSNIGETVYIPRITLGTTKMKWPFTLQRRQFPVRVC
YSMTINKSQGQTLQRVGVYLRKPVFTHGQLYVAISRVTSRSGLKILIENDDGSCGTQTKNIVYSEVLSATVQAVISRTL
>CAEV-C_pol#LTR/Lenti gi|12082829|gb|AAG48629.1|AF322109_2 pol protein [Caprine arthritis-encephalitis virus]
MQTRHYMSQLWKKRAYTEKLQTEKKKGAGKHEEGATCGAVRTPYGVTQAPLIVRVQIGNQEKQLLFDTGADKTIVRMHDG
TGIPNGRIKLQGIGGIVEGEKWNKVPMTYKGETSCPSLVVLRDSPVEVLGRDNMEAFGVTLIMANLEDKKIPTIPVELKE
GCKGPHVPQWPLTAEKLQGLTGIVEKLLQEGKLAEAPEGWTWNTPIFCIKKKSGKWRMLIDFRELNKQTADLAEAQLGLP
HPGGLQRKKNVTILDIGDAYFTIPLYEPYQKYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPAVYQFTMQRLLKGWIQQH
KNIQFGIYMDDIYIGSDLTIAQHRKIIEELASFIEQFGFTLPEDKRQEGYPAKWLGFELHPEKWKYQKHKLPELQEGVIT
LNKLQKIVGELVWRQSLIGKSIPNIIKLMEGDRALQSERKIERIHVQEWEACQKKLDEMVGNYYREEEDIYGQITWGDKA
IKYIVFQRKGEPLWVNVVHDIKNLSLPQQVIKAAQKLTQEVIIRTGKIPWLLLPGREEDWRLELQVGNITWMPSFWSCYR
GAPKWKRRNIVAAVVDGPTYYTDGGKKNAQGSFGFISPTGEKFRRHEDGTNQVLELRAIEDPCKQGPESMNIVTDSRYAY
EFMLRNWDEQVIRNPIQARIMAEVHKKKQVGIHWVPGHKGIPQNEEIDQYISEVFLAREGTGICEKRKEDAGYDLLCPHE
VILKPQEVKRIPIDLKLKLKEKQWAMISGKSSVAAKGIFVQGGIIDSGYQGQVQVILYNSNKIEVKIPQGRKFAQLILMN
LQHEELEEWGKERKTERGTKGFGSTGAFWIENIPQAEEEHYKWHQDARSLQLEFKIPRAAAEDIIQHCEVCQEGKPAAIT
RGGNKRGIDHWQVDYTHYKEHIILVWVETNSGLIFAEKVKGESGQEFRMQTLKWYALFQPKSVQSDNGTAFTAEATQHLM
KYLGIQHTTGIPWNPQSQSLVERAHQTLKHMLEKLEPQFVALQSAIAATLVALNIKRKGGLGASPMDIYIYNKEQQRQQD
NSNKLIQKKFCYYRIRKRGHPGEWNGPTEVLWEGEGAIVVKDKESDRYLVIPYKDAKFIPPPSEQKG
>Gypsy-34_DR#LTR/Gypsy 19-4437 [Danio rerio]
MASRRKVTSGKQARKGLRSQKPVLEEVAWDTMDEEETASAEGAEAMSPRVKPESKGMESDVVALMRTFLTAQSKREEGLI
YELRGLRESLQRSVIPETSPSQSLRLDLPTPAASRIRGPSVTQNPTLSTQRAADSPPPPPMRPESRMPAFQEGEDVENYL
RRFERLAKTWGWPEEEWANRLVPLLTGKALEAYLAMDEDRAEVYKDLREALMAKFDLSTETYRQRFRQTSIPAGETPTET
YNRLKGLYKRWIRPEQCTKEEVGEAIILEQLLRVLPLEVRTWVREHEPTDGLNAAKLAVQYLNAHRGGQMYARSTPTRGA
KHTDTSGKGTVSVFPTKKLICYYCQQEGHKASNCPVRKPKLTSLCYVPREGDVKDKVTYTNRHIDVTVNGQNINALIDTG
STFTLIKQCYIPRNTIDFTHTQNIQCVHGDKKDYPTTEVTLVINDQPYLMSVGVVDALPVGMVLGWDLPVLNELLSNAVE
STNVYDDISCPVLTRSQTRAGLEPLPAMDDSLIQGEGGKPKKSRRQRRLEKQLGSPIVEVSTEGLKVTEWDIPKNIAQLQ
AEDVTLKPLFSKVCEGEKQIETLGAEKYVIEKDVLYVLSDGVKRLVVPTCCRSLILHLAHTIPWSGHLAHQKTYQRIGTR
FYWPSMYTDVHTYCSTCIVCQKTSSVHRSARVPLHPLPVIETPFKRIAMDIVGPLERSSTGNQYILVICDYATRYPEAFP
LRSITTAKVITALTQLFSRVGFPQEIITDQGTNFTSRLMQLLHKQLGIHSIRTSPYHPQTDGLVERFNQTLKRMLRKFVS
DNGKDWDKWLPFLLYAYREVPQASTGFSPFELLYGWQVQGPLDLVKRSWEASSTTAEGETNIVKFVLQMRDRLEKYREQA
QENLEEAQKNQKLWYDKWSRRREYQPGQKVLLLLPSSTNKLLAKWQGPYEITKKKGPVTYEVFHPDKGKKNQTYHVNLLK
EWREPGPELKKGMLACKVETPEAEDDDKVDFETPEHLQSAVSLEHLQERQRVELTEVLNTYPELQRGRPGRTNLVEHKIC
LTEATPIRQRPYRVPESLIKPLKEELKMMLEMDIIEPSTSAWSSPIVIVPKKDGTLRVCLDFRKLNAVSKFDAYPMPRID
ELVERIGRAKYITTLDLCKGYWQVPLEKTSREYTAFRTPVGLYHFKTMPFGLHGAPATFQRLMNQVLRNCEEYSAAYLDD
VVIYSTTWTDHVHHLHKILQKIQKAGLTLNVAKCEWARQETRYLGFQLGNGEIRPQVDKVEALRNCPRPRTKKEVRSFLG
LVGWYRRFIPQFSEKAAPLTNLTAKAIKNPVPWTEECEKAFITLKERMCTVPVLRSPDFTKKFLVQVDASARGIGAVLMQ
EDEGQEHPILYLSRKLLPRETRYATIEKEGLAIKWALDSLRYYLMGREFTLETDHRALTWINTMKDQNARVTRWYLSLQP
FKFNVRYKAGKSNVTADYLSRLPDVSNLGEVGG
>Gypsy-33_DWil#LTR/Gypsy 113-4206 via tfasty with Gypsy35_AG, 1 frameshift. [Drosophila willistoni]
MLRSGKKKGAKNQKESNYQVQMDSLNSTFTSNVEITEQPDLKVVSARETDIYPCASKNDADESRQTGAEETKSEDGNADN
ICTSVRSSELETLIRMLAVKFEDSGSQRNDKFSNVTVDSFAKVVPDFDGTSIPIGQWLKNFEENAEAYQLSEKQKYVNAR
NKMMGTAKLFLETIVIGNYEELCIALMDEFDQKLSSAEIHKQLRSRKKLQSENFHDYVLQMRKIAALGEIEDTSIITYIV
DGLEVREDLKYPLYSSTSFKQLRKCYDLVGTMTRNAQNKRRQIVHTKPVVQADSNYKGKQLHCFNCGATDHIKADCNVGT
KCFKCNGIGHISKDCPERKHQVNIVRKSDEDSRLKEFSIDGKNVICLVDTGADVTIMRRDKYEELFLDRQMQNHVEKLFG
LGNVVTEVIGEVTTTVKVDGLSTEHKILIVPNSKLEADVLIGYDFVKKFTVMMDPNGCTFSLHADEKNQLNVLNVVSSVN
EIDVEPKYADTVAALIKDYKPKDNPLSCPIMLSILPNCNNIVFRESPSRLSANEQTVVKDQVEEWLKQGIVRQSNSDVAS
RVVLAKKKDGSHRLCIDYRKLNTLVLKDRFPVPIVEDVLEKMQQAKYFTVMDLKNGFFHVDIEEESRKYTAFVTKQGLFE
FNKAPFGFCNSPAVFVRFIYYIFQKLINAGVMEIYVDDIVVFGSTAEECLDNVKTVLEEARKYGLQIKWSKCQFLKRRIN
FLGHEIEDGVVCPGKEKVKAVKNFQLPKNIRGVQAFLGLTGYYRKFIRDYAIIAKPLTTLLKKDAEFRMDSPQVKAIEKL
KECLMNKPVLKTFKHSAETQLHVDASKNGFGATLLQQHDDKWHPVFYWSKKTSDQEEKLHSYFLEVKAAYLATKKLRHYL
MGIEFVLVTDCAAFKMTAAKKDMPRQVVQWLMHLEDFSCKIEHRAGDRMKHVDSLSRFPVMIVTTEVHAQMLRAQSNDEK
FAAVFEILQHKPYADFKVKNKLLYKQVDGLDLLAVPKSMEKEIIRNTHNFGHMGVQKTKHAIQQDYYIPHLDKKVGQFIA
NCVQCITHNRKLGKQEDFLHCIDKGEVPLETLHVDHLGSLDPTLKNYKYIFAVVDGFSKYTWLYPTKSTDASEVVKHLTD
WVTIFVNPRRIVSDRGAAFTSKHFKEFCTNHKIEHVETTTGVARGNGQIERVNRVILSVLAKMSAAEPQKWYRYTGQVQR
TINSNVHSSTKFTPFEVMFGLKMRNESDLELQRILEEELLDGLQNERNQIRAEARQQILEAQTRYKRHYDQRRKPCHGYQ
LGDLVAIKVPQFVSGKKLSNKFIGPYEIIKVKRNGRYEVKKSAEFQGPNQTSTSEDNIKLWRYMENNDETDLEGSSEADD
LQDDR
>Gypsy-34_DWil_gag#LTR/Gypsy 879-2297 [Drosophila willistoni]
MPLIRSNEELSVLPEAECTICLKALLETEELRITKCNHVFHQECIENYIQEHQECNFCKKLCHQKDLVQFIMSDQAEGPI
INKNRKTHNTRAQSQSSNVASPASQLKSGGRGRKPKSSTARKPENSNQQRSARSQQQSISNRAAEINVNSIFERMEYLID
QRLGNLNLNNSVGRSNNHDDRVPTPRSDSVSHHYINPGKAAQLVQSWGIKFDASPKGPTVSEFLYRIKALTVDNFQSDFT
PVCRNLHLLLTGRAKEWYWRYRKEHDEVIWEEFCMDLKQEYDDFKDDDLILEETRNRKQRNGEAFDVYYEDVMTLISRLV
IPLEEKRLVHQLQRNLISEVREALLYVPIESVSKLRQLVHRREQFLREESGKRITKYTNVRKNIALLEETDENPEEEDIQ
PELNAIQVKEKKYICWNCDIEGHRWDMCLEERRIFCYGCGKKNVYKPQCDVCLSRSKNSNQGPSFRRSRVDPQ
>Gypsy-36_NV#LTR/Gypsy 184-5010 [Nematostella vectensis]
MPKFKCPFPGCEYETEDVKDELAAVLISVHSNGTHITNQTPSTPNQTAKVEKVRRPTVSSAGTSEEWSYFMTRWQDYVEA
TKITGKDKTIQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLGAIKKLAVREENAMVARVQLHNMRQDRDEPIRSFCARLR
GQASVCKFLITCPNCNTEVNYTENILRDVVTRGLADEEIQLDLLGEKDQEMSLEDALKFIEAKESGKRSAGRLLQTQGAE
AIRSQYRNMKQSEHKNRKSSDQHGTGTCNYCGKQGHGVKAPPKIRKQECPAYGTTCQLCGRANHVAIMCQNKDKPLGQSP
HHVTDAGKHTENAVFDALCSVNSSSDDHAIHGISLDHHLYDNLSNRWIRSASQPQPYISLTATIQPDDYTALGFHPVTNK
PKSAQLPAMADTGCQSCLASLSVIRRFGLNEADLIPVTTRMHAANGTGIPILGAVILRLTGNNQPGLEAKTRQIVYVTNE
SDRLFLSREACKDLGIISESFPTVGESLYHPTSDSAAISSNKGNTMDTPDNSCTCPRRQMPPPKPTEPPFPATEDNRANL
QEWLLDYYKSSTFNTCEHQQLPLMDGIPMRLMVDPEAEPVAHHTPIPVPLHWQEEVKAGLDQDVALGVLEPVPVGEPVTW
CHRMVVCAKKNGKPRRTVDFQSLNLHATRETHHTQSPFHQARSIPYNTKKTVFDCWNGYHSVPLHQDDRHLTTFITPWGR
YRYKTAPQGYIASGDGYSRRFDEIVSHVPNKTKCIDDTLLWADDINSSFHQAVNWLDLCGRHGITLNPDKFVFAADTVEF
AGFEITRNSVRPCQKYLDAIRKFPTPVNVTDMRSWFGLINQVSYAFAATERMLPFRASLKPGTQFTWTKELDQLFEESKS
IIIREIEDGVRIFDKSKPTCLATDWSKTGIGFWLLQKHCKCPSTAPFCCRSGWKVTLVGSRFTHAAESRYAPIEGEALAV
ADALDKARFFVLGCSNLIVAVDHKPLLKVFGDRSLDEIPNSRLRNLKEKTLRYKFRMVHIPGARHKAADAISRHPTGSTT
PEMMTLPDDIATIDASNSPHPANAALASLRTREPPEESCSYGIDKELVSSATSTLNTMAVTWETVKLETTSDPNLHSLTA
IIESGFPEAQHDLAPALQEYHRFRHDLHTIDGVILYKDRIVIPPTLREVILKALHSAHQGVTSMTARAESSVFWPGITPA
IVALRERCSYCNRITPSQPSAPPYPPILPAYPFQCICADFFHYKGSTYLVAVDRYSNWPIVEKARDGSAGLVECLRRTFC
TFGIPDECASDGGPEFVANPTQQFLKEWGVHHRLSSVAFPHSNSRAEIGVKTVKRLITNNTGPHGELNTNAFQQAILQYR
NTPDPSTKLSPAQCIFGRPIKDSIPILPGHYIPHPTWRDTLALREEALRNRHMRAAERWSQHTKRLPPLAIGHHVRIQNQ
TGPNPTRWDKTGIVIEVRQFDQYVVRVDGSGRITLRNRKFLRKYIPVQAPQPPRILNDDLKFISRATQARPKESLTKLPK
GTATTSPTGISVETPTRPSPPLTRDTGPGTGTTGSDTPTRPPETEPGSAEASEPVSPAKPPSNPPLEKKIPLALRRLQDY
NKKGLLEQ
>Gypsy-36_BG_pol#LTR/Gypsy 1532-5299 [Blumeria graminis]
GKLVTPGESRPQESKLVHSSEFKMVSTPFLVNALLNDVTMVQALIDNGCLCTGIINEKLAIRLGLPRLPIEPRPLETAEN
STKDKPMIRFITHVSLDLDGFVTPKLLLYVVPGSTHQLILGKRWLEDQDAIIHSKDQQLHLRKLGGYVQSAKRWRNDLKG
TPRPKASTASELTNMLKSVPVCRASLEDINKALRSKPRLTIGEARKRLPEQVKDFAHLFADDSGADELPPLRGSLDHAIN
LITKDGKPAQPSWGPLYNMSREELLVLRKTLTDLSAKGWIRSSNSPAAAPVLFAKKPNGGLRFCVDYRGLNAITIPDRYP
LPLFKETLRQLSKARWFTKLDVKSAFHRIRIREGDEWATAFRCRLGLFEWLVTPFGLANAPATFQRYINEQLREHLDHDA
TAYMDDVLAYTSGICEDHWKTVRSILTRLDKAGLYLDIDKCEFLCQEVKYLGFIVRAGKGITVDPEKVKAIQSWEAPISV
KGVRSFLGFANFYRCFVDGFSEIAAPLTDLTRKSALWKWGHEENAAFEKLKEIFASEPVLAQWDPERETILEADCSGYAL
GGCLSQRDEQGRLRPVAYYSKRLNGAEANYPIHDKEMHSIVTCLQEWQAELTSVAKPFVIMTDHKNLKFFTTKRLLNERQ
VRYNDVLQRFNFELKWRPGKACERPDALSRRDQDKPTRFDDERTTGRVMQLLPKIPVHSTSAKRNDETTQIRDTASTMRI
FDDDELQRLWEHGVNEDKQWRRARDAVQSGERGFPPEISHDMTANIAECTVAADNILRGRENRIWVPNYEPLRTAIMQKT
HDSYLTGHPGKDTMVGILLQRWFWPKMRHYVRQFIRNCDVCGRTNVWREAKAGFLKPLPVPERLGSDLTIDFVTDLPESN
GCTNVMVITDRLGKDVFMFAAPTMDAENCARIFIDRYYRYYGFPKFLTSDRGSDWLSHFWKFFCKSLGISQQLTTAYHPQ
SNASERANQEMFKYLRAFTCYAQSNWAELLPMAQMALNARPSSAIGGISPFFLRHGYDVNPLPEPTKENDLSRHPGKVLA
ENYIQRLRNAQDFAQAAMASAQQRYEENANRLRRQPERFKVGDKVWLNLRNISTPQLSKKLAWLHAKYRVTAVPDALTVE
LDVPGNLHKRFHVELVKRAGDDPFPSQKRDDAQNPPLIDQLEEPEYEVESILRARTVQRGRGTFRQALVKWTGWANPSWE
PIELIKDTIALDKYEEKYGQIESNDGPPENSAGAYVGPAEPHAMEKRRSRRKRRSS
>Gypsy-33_BG_gag#LTR/Gypsy 33-1295 [Blumeria graminis]
MTDSPITFTCASDFLSHLPKVDEATRKKLMTEIFETGSNLQVETQSLKKNISQIEQQRTEILAINSELRQELLELRATHT
KLLQASAVNNYKLKESEGLVETLQSQILDNQRIGPVGTPQSELFRIDEKFTGRDKAQYPSFQRQIKIALAQNKDRYNSLQ
SQISLIYQNLGPGPKSFLDRYLSEDGLFIFESLRSVWDVLDVSYRNPNEEEEARDSLSRLRQSSQSFGTFLSEFQRLHNL
SGITDPKTLISYMRNGVSSELRICIGQHQDIHKNYDFDEYVNLCRDCVVRLDLERPAHYLDRGTNHSVPRPNYRDQGSEF
RGPSPAFIRKPAPRPPIAFEASNTSSGGDPMILDKFNMSHLGPDGRLTREERFRRFELGLCMRCGKSGHQAIGCNTRNRG
MVNQLYMEPNIPRDPEQQLKD
>Gypsy-30_DWil#LTR/Gypsy 97-4039 via tfasty with Gypsy9_Dya, 1 frameshift. [Drosophila willistoni]
MQTPRAPATDEKGKHVTLPKFNPEGAGADATAWCTTVDLIFADKMPEGSTLMITLSKALEGSASQWLSQICFAGITWPQF
KELFVQRFVGIETSAAILMKILNGRPKSGESYTEYGSRIVTLIMSKFKSNDLEEIAVSLALAHMAQMDDKLSRLVFTNNI
KTRNEMQQQLQAHTFKKRNLDDDSSTTGPERKKPKYLSQVKCNYCGKSGHKYAECRARQRTPIQGKSHYGSSSQGSKDRS
TVKCFKCDELGHFASACPKGRPRGNDRVIEKRVDICTVAPPSGTICSSTGESIPFCFDSGAECSLVKESVADKFSGKRIN
NIVKLNGISNDSICSTQQLLCNISIDQCYFEILLHVIMDKYLKHDVLIGREIFSQGFGVTMDADKFQLYKTKRVEALIIS
NYEDVIESNSELDDLDKAALINILKYYSEWFIDGIPKTRVTTGHLEISLIDQQKTVQRRPYRLSEEEKNKVRGKVDELLK
AQVIRPSCSPFASPMMLVKKKNGTDRLCVDYRMLNDNTVADKYPLPLITDQIARLRGAKYFSCIDMASGFYQIPVHEDSI
ERTAFVTPEGQYEFLTMPFGLKNAPSVFQRAIMKALGALAYTYAIVYIDDVLIIAESKEDALVRLRTVLETLSKAGFSFN
VTKCSFLTTRIEYLGFELSNGEIRPNSRKIQALNGLRPPQNVSQLRQFIGLASYFRQFVLNFSQTLKPLYLLTSKKNTDF
VWLPVHEQIRTKIITILTQTPVLIIFDPQYPIELHTDASCIGYGAILLHKIDNKPHVVEYYSKCTSPAESKYHSYELETL
AVVNAIKHFRHYLQGRKFIVYTDCNSLKASRTKLDLTPRVHRWWAFLQAFDFEIEYRKGERMAHVDFLSRNPVLEQHKRP
NKIPELRINLTEVSDNWLVSEQQRDSEIQEIILKLKSNELPGNMDKTYELRKGILHRKIQRNSKTKCLPVIPRAFRWAVI
NHVHEAIMHLGWEKTLDKVYGYYWFENMSKYVRRFVENCITCKVSKPLVGKVQVELHPIPKIEIPWHTIHIDITGKMSGK
NDLKEYVIVLIDAFTKFVYFHHTLNIDSESCIKAVKSAVSLFGLPTRIIADQGRSFASKSFREFCSSQKINLHLIATGAS
RANGQVERVMSTLKGMLTAVETSQRSWQDALAEVQLAMNCTINRVTKFSPLELLIGKEARPFGLLPINEDNNDEVDKENL
RKEAKKNMETQAKYDKNRFDKNKAKIVNFKVGDHVLLKNEERHQTKLDPKFKGPFEIIETLDGDRYLLKSLTCNRKYKYS
HECLKAIPNNQILDELCEDRDSTMEVASVVQYDK
>Gypsy-30_BG_pol#LTR/Gypsy 1764-5186 [Blumeria graminis]
DSPNTYFVAVGKGKFEPPPKGQPLREGYGKPHRMFFARITHFPYVQFSVFFDYGSSACYVSQSFSKYLTSYNTSIISKMS
GIGGPGPTISKDAILTAQFLCSNHLESFWTQEFTVSLGVVPDGTFPADVTLGQTLFHEPGLRCLSNGKLQLLNLIDQPIL
NPIINTLPNRKVFTTSNIPMVKWHPATLHSALQFSLQYQVKFPSLFDKSLRQMDKLSKTEHRIETGNCQPIKLPPRRYSP
AQQQAIRDFCATHDGSIIRKCKGPWAAPLLLTPKKTLTQTNQTVWRICVDYRELNKITKKRAHPLPNAQDEIQRAAGHNF
YAFLDLENGFWQIRMHKDSSEKTAFVTPFGVYEWLVMPFGLCNAPATFQRFMEEVLEPFRPFVAGLLDDVAVWADSMAEL
HSRLILIFSRFASYGLLLNASKCRLFVSEGIFLGFHISKHGIAADPEKVSAIRDRPMPTTTSEIRGFVNAAGYLRCLIKN
FSRLAGPLTDQSSGPKNCPVILTDQSIQSWKSIELALTTSPVVKKFDWRLPVVLETDASQKFVGAVILQPYMRCSNNSDR
SVLHPIAYFSRKLNDTQQRYSAQERELLGILLSLQHWRHWVEGGDVTVITDHESLRTIQTKAEQPVRMVRFLDAIEHFNI
RIIYRRGKANVLADFLSRPCDVLFLSREEGEGNVATDDDENSRIQSGAERELEMEEIKHPHELNRIDLQCITEFLTLGEA
LPLNIAATWVRDNFAMYNSKLHLIKKNPSQQVGDAPGPSGAATLLEILEYEDLVSTAVNVHEGQGHASIGNTMRELGRRF
WHPELILAAHEAVRKCKSCQLMKPPDPLLGSLTPIVPAPPLTRWGIDHTQVGPQVLLNAIEYATGWLESRLVPNADFANT
VPLLTYIIQNFGKPKQIISDNAGCFGGIEAQRFQASQQLQVVHTTPARPRGNGKVEQANGVLKAILVRVLLDSPKITLAG
ALSLAVMNFNRRVSPSGYSPYFLLFGTQPPEEENSYPVYTREATESEERLWAEELGRKHPAPIARSYVSSMKATRDKIRA
YLQEEKALIRTYAPGDWVLRVRQRRHKMEPYYDGPWAVAACHNNNTYSLISPGGYKLGNKYNGTNLFPAYVREGHPVRSL
WYGSRRMLEQDRKTLKNSARI
>Gypsy-30_ST#LTR/Gypsy 27-3955 [Solanum tuberosum]
MDMAMIQANCMEEEEATIARFLNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQNNSWRSRPNTISKKPWSTQE
GKAPSKPQDDRGKGKVEEGGKTFNPKSSKPSSSIQCHKCHGRGHMMHECPSRRNILLRENGEYESEKSEGEEEEGEGVSE
EDDLELPNDGIIGVVRRIMTINLGSVDEGQRENLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRPTPYRL
QWLNDCGEVKVNKQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQV
FEDQKRLRETMGKQKGEVKSELEGKQKGQEIEKKRDGREKEREGSDLSKEVKEGVSKKIKCFGERKEAKEKKNESLYIKA
KECLNARREGLPIILLTYKEVLINFEQLTPSLPNSVSSLLQNFEDVFPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYR
SNPEETKELQRQVEELLEKGFVRESMSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDQLYGSKIFS
KIDLKSGYHQIRMNPGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVFKDFHGKFIVVYFDDILIFSQNLDEHL
EHLKQVFEVLRNQRLFANLEKCTFCVDRVVFLGFVVSSKGVEVDDEKIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDF
STIAAPLTEVIKKDKVFTWGKEQDDAFNLLKDKLCSAPLLQLPDFSKSFEVECDASGKGIGAVLMQDSKPIAYFSEKLSG
ATSNYSTYDKELYALVRALATWQHYLWPREFVVKTDHESLKYLKSQGKLSRRHAKWVEFIETFPYVIAYKQGKENVVADA
LSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLM
GHFGVPKTLEILSEHLYWPGMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRTKYGKDSIF
VVVDRFSKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQT
EVVNRTLGNMLRAVLKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTNDFANLDGKKKADMM
KKIHEQTRLAIEKKNKEVALRRNKGRKYVVFKPGDLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERIGDNAYKLDLPGE
FQVSATFNVSDLSHFDADLNSRTNSLQEEG
>Gypsy-32_DAn_gag#LTR/Gypsy 821-2326  [Drosophila ananassae]
MAVRRSLENIPALSQPRESHICTICNEANEEAEWTITACRHQFHLRCLTTWLETNATCPLCRRACSRSELGNPEAGEARQ
LIEVVPSTGNSPRTGTIPRTRPQTRQGSRNNRVATAIPRVTRNTMQNPERANHTRSSSAGNGVSEERVHQIIAGALENQM
SSLAASISNQISATMANLNLGPSRRGSRGEIPLEWDNEVPSFVSRGNPPRDNFRENIPSRNRLSNHSVDRPDRVSSVISN
WNLKFSGSNGEIPIEDFIYRVNILTTQCLDGNYDLLFQFANLLFTGPALKFYWRVHRSPDLTNWFCLCDRLKERYQDQRS
DRDIKESLRRRKQGNTETFDDFLDSMLGIADALRDPLSDSEITEEVRHNLRAELKHELLHVPTPTLAALRTECHRHEEFF
KGFRNRAVPRTNTRPSLNEIQFINQTEEDFDGDQESNEVCAIRSTDKIKCWNCDEIGHRYQDCLKTRRIFCYGCGSINTY
KPNCSKCHPGSENRSQDIRQNH
>Gypsy-31_BG_pol#LTR/Gypsy 1680-5693 [Blumeria graminis]
GKRRALEEVSSLGHLVELFQINYDRLMGNLDIFRVPCRLVSNGISVSILTLPDSGAHGFCFIDRKVAENVCDRLEIQPMA
LPKPITPKGYNGSRGRIITHFLVCTMVVDGYSLSQIPFLILDLANQDAILGDGWMAHFDVLPDLRNRKLYWRTPPQQKPS
FCRTLNIPLKKSRPFPEHQIDADRRDAAFIQEINIPEGEEIFHTVRLLKRKVVRFSLPSESLIPLTTSSKSNNLAARPSK
PLVNERLHHSKRKIIASNTVKADILEISAVTFNLLARRKDVETFSTSLQEIDHELNSRELDNANCENGQDVDRQICPSQY
HDYLDVFSKSASDSIPPNRPYDHKIEVEGNEILGYGPLYNQSSEELRNVKQYLLDNLDKGWIVPSQAPFSSPVLFVKKPN
GGLRFCVDYRKLNNITKKDRYPLPLIDETLARLNSAKIFTKLDIRQAFHRIRMHPDSEELTTFRTRYGSYKYRVLPFGLT
NGPATYQRYMNDTLFDYLDVFCTVYLDDILIYSDDLSEHETQVKLVLQRLRDAGLQVDIKKCEFGVKKTKYLGFFVGTDG
IRVDPDKISVIKNWKQPTNVKGVQSFLGFCNFYRRFIRNYGVIAKPLTRLIHKDAEFWFSEECRAAFQELKNRMINAPVL
SHYDPSKESRIETDASDGVIAGVFSQLSDDNDWHPVAFFSKTMAPAELNYQIHDKEMLAIVRSLSHWRAELQGTPKRIEI
FTDHKALEYFMTSKSLNARQARWAEALSEFNFLIRYRAGKANAAADALSRREQDVKQQASMKSAIRNKALLTKSSVEDPP
TELALNISFIETFELADRLLNVNKSHSSLTKLRDLAKTGEEHYKLEENLLLFDGRLVVPDADNIRTELVREAHNQPSTAH
PGTKKTYKLLAERYYWKGMKCFIEQFVANCHPCRRSHLNHDKTPGWLHSLPVPNHPWQHICADFKDMPEDDEGHNMVAVF
IDRLSKKAVTIPCKKSVNAKDLAEMYYVHCFRHLGVPESIVSDRGPQFISEFFGTLCLLLGVKRKLSTAYHPETDGQTEI
MNQYLDLRLRPFVNHFQNNWSRLLPLMDFAQLALHHDSINTSPFQLLHGHPPRLSFDWKAPQKPENARQAIAQEEAKNRI
HQMQEAWEWVRHHMESAQRKKQKDVDIHRREPDFQVGDKVWLSTKNLSLDRPSKKLGHQNVGPFKIVNKKGWSYELDLPA
SMGEIHRVFHAKLLRKDPASPVPGQINPLPEALEIIPGHKEWVVESIRTCKLKYKKLYYRANWLGADEDPEYYPASNFMY
APHLIKRFHLENPAMPGPPVALPRWIDAWEKGIEDYDYLEDNSSMDRTLRSAFFRKGG
>Gypsy-36_PT#LTR/Gypsy 31-4559 via tfasty with Gypsy-20_ST, 1 frameshift and 2 stopcodons. [Populus trichocarpa]
MVKSMEKHCKKLEERIQIIQQEFQESLNDQQIKWQEQLGEQSRKTDQISVQIETLSSQFQAFLAHHMTGKEMGSTSRGIL
QTPARGSPEGMFSRGKGPARGDTNCGQEPQRATFHAGFPRMDLTTFQGDNPRGWLRRCNKFFKLNATPLQQWVEIVALYL
EGKAEIWFEGYMCRLDVSLEWEEFSRAICSRFGSRDDIVEEFNKLTQEGGMEEYVERFEELKSLMHSLNPLLPESYYISS
FISGLKEDIKPMLKILKPGTLMTAFDQAKWQEESNNILARKNRFTTKPVMGSQGGRSFGNQQSNYMSNNLQTPKVSETIY
EQRRRLGQCFKCGDKFMPGHKCIVKGLHMIEGQEEEEFMDAATGNNSTEMAPDSKIEEYGLSLNALTDNYAHNTIRIRES
YQGRDLIILIDSGSTHSFIDANVAGELQMPVENSHVLAVTVANGSVMLCDSYTAGFTWFMQSYEFVADLRILKLGRCDMV
LGVDWLRKFSLILFDFIKMKITFKKEGRMLELKGIIKTTSLQSMTVEKVQKNLKTSIMGFVGQFFLIEATTASVAVLANA
EVGELLANYAKVFQEPTALTPRKRHDHRIPLQTGAQPVNCRPYKNSFFQKGEIEKMVKEMLCNDIIQPSVSPFASPVLLV
KKKDNTWRFCVDFRQLNKVTIKNKFLIPLIDDLLDELQGSSFFSKLDLRSGYHQVRMHKGDIEKTAFRTHQGHYEFRVMP
FGLTNAPITFQALMNDILEPFLRKFVLVFFDDILIYSSSLEAYLRHLKQVLEILKTNQLYSNISKCTFIEPxVEYLGHII
SAEGVATDPKKTQAVQEWPIPKTIKELRGFLGLASYYRKFIRKFGVISKPLTELLKKNNFVWHEGALEAFQNLKRALCET
SILDLPNFTKPFVLEIDAYDVGIGAVLSQEGRPLAFMSKALGGKHLGLSIYEKEYLAILMAVDKWRHYLEQDQFIIQTDH
ESLTYLLDQKIHSHIQKKGLTKLLGLNYRIRYKKGKENKAADALSRRIIQSEDGCQETDTIGGWLTAITQVVPSWYDQIY
NSYKDDARLQDIIQDIMIDATQAPNFTYANGVVKYKGRIVIGAAGSLREELVKTTNDSYIGGHAGIQNTYRRLKAHFYWP
SMKKWVYQLVQHCDVCKQAKAERVPYPGLLQALPTPHGSxQDITMYFIEGLLKLESRDTIMVIIDRFTKYGHFITLAHPF
TAQDVAKYFLDHIYKFHGLPATILTHRDKVFTSLFWKELFKHLGVKLLLSTAYHPQTDRQTKRVNQCLETYLRCITMHCP
KKWHQWISTAQLWYNSSFHSTIGKSPFQALYGYEPPAREMVLTEATQVVVVEEWMQRRINMDQLIKGLLEGARNRMRQVA
DKRQLERTFFIGDWVFLKLQPYRQGSVMYRKHYKLNLRYYGPYQILERIGTVAYKLQLPPGSAVHPVFHVSLLRKKVGEV
AIVSQTLPIVDDEGRVKVYPVTILERKLMKKGNTAVVAGLIQWSNSFPEDATWEELTELQLQFPDFNIAT
>Gypsy-43_NV#LTR/Gypsy 97-4166 via tfasty with Gyps1, 2 frameshifts. [Nematostella vectensis]
MSDLIGFETPKIDWTTSPDIELKFKRFRQKCELLFDGPLKQRSEEQKCRYLLLWTGDYGLDLFNTWNLSTEEANKLAEYW
KRFEEHVKPQSNHLLNRFYLRSLKQNNRPLDEFLTEAKLLIQNSGFPTDLHDELMRDSLVFGADSDAVRKKCIAEGNSLS
FKRAREIAHTEEATRLQMNAMSNPQNQREVNSIQNNNKARKQRKGKTHPVNRSNKKPGDEKGASAQHHTPDKCERCGNTP
HKKGQKCPAIDSECFACHKTGHFSTCASHPKKIVHSLDDENCDERVFLGTLVAETSTNENSPSGIESIFQLENRNRVTTE
LQFTSKPHHKNTTPIVCRIDTGAELNVIAKKDIECLFPKKKRQLEKPGCKIISYGGHEISNLGQCQLYVHHKGQVKEITF
NVTEVSGPAIIGCKTCDDLELVKYNLNLDKAPKAQSHSQHDNMHTPLTKGKLVNSYKDRFEGLGAFKMRPYHITLEEGAE
PVIHPPRSVPVHLRELYKQEIDKMLEAGIIEPVDTPTDWVNSIVLTETTNDKGEITKIRVCLDPRDLNKWIKREHHYTKT
VDEVVTQLSDAKYFTLIDATKGYWHVPLDNESSYLTTFGTPFGRFKFSRLPFGLVVSQDIFQRQLDSALEGLNGVTGIAD
DIFVYGSTEEEHDRNLTDLMERAQEKGIVFNAEKLQFKCNEVSFFGHTWSPEGVRPDKKVSAILDMEAPKDTKNLQSFLG
LVNYLTRYSGQLATLTAPLRELTKKESVFLWGPEHDEAFKKVKEEISSLGVLRYFDPKEETVIQTDASLKGVGAVLLQGG
QPVCYASKALTETEQNYSNIEREALGVVWGLERFHYFIYGKQCTVNTDHKPLESIFKKKLTSCPARLQRFVLRALKYDVT
VKYVKGSDVPIADALSRLSPQPAPPKGQLPQLSIHQVTDTLPASPAKLQQIRDLTTSDPTLSQLRDTICKGWPESREKCP
SMLYDYWNFREELTIEDGLVLKGERIVIPPTLRPEILDTLHKGHLGQEKCLLRARTTVFWPGITKDVVNLVKTCEACQKH
QRHNQKQPILQPEPPSYPWQKVSSDLFDYKGKTYLLVADQYSKFPIIRKLGSAVGSTTSLVVINHLKSIFSEHGIPAQLL
SDGGPQYSSKEFEDFVTTYGIEHTLSSPHYAQSNGFGERMVQTVKQILTKCEEKNEDPYLGLLSYRTTPVDHNLKSPAEL
LTNRKFRTTLPMAQRASLTRDGSDVKETLYRRQTTQEQNYNRTAGPSLTPFEPGQPVRMFDHHSKTWQKATVVKPAKEPR
SYIVRNQETEGVYRRTRSQLRPHHHFAPDESLTAPTPDVPTPVDIPDAATHAIGPTATGYTTRSGRPVRAPDRLDI
>Gypsy-43_AMi#LTR/Gypsy 53-4212 via tfasty with Gypsy-5_Crp, 1 frameshift. [Crocodylidae]
MEVPMAAAAAGVDPVQQTLHLMGQVLQQQQSARQLALEESWIQQQAWHQRNVVELRIPKMSVHDDPEVFLESFEWAALVA
RLEKSRWAGHAGXLLIGKAQAAYGSMTWDEARDYEKVKKEILYRLDINPETYRQAFRARKQREAKEPRALLQQLADLAAK
WLKPVESSKSEICDKILLEQFLNDLDEETQKWVHCHRPGSSAEALQLAENFSSALGERPPDRNPRVTGYSKPHEPAKPGS
RELRETRRPNSNGVICFQCGKAGHMSRDCAYVSWTPTRATHSPFEELGGTSGPADSAGIESMDCSVGKEATGGPWPRPVV
EAWVGGERLEAIVDTGCSHTFIQSRLAPATYVRKATPVRMTCMHGHGTYYPRRIYQVTVLNTTQEMPVGVARDLPXPMIL
GRDWQEIYEVLNVIRSDSLGGGVSLAGNQAEDLDLERLACSQAFRRAQEEEEFQAIQETELARREEEVVDPGRYASLPRF
EVRKGLLYRVKRGPQEGEEVAQLLIPTQFRLPLLKLAHENPLGGHMGHRKTEAQLTKWCFWSGLYEQVERFCRACPACQR
VSGGKPARAPLQPMPMIKVPFSRIALDVVGPLPKSSAGHQYLLVIIDYATRFPEAVPMRAVTGPRVAEELLKWITRVGIP
REIVTDQGSNFMSGVLRSLCGMLRIKHLCTTVYHPQTNGVVERFNQTLKNMLRWCVQTDPWRWDLMVLPLLFAAWEAPQS
SLGCAPFDLVYGHRPRGLLDLVKEGWEEGPKGGVDASEYVQNMRQRLQRAGELAREHLRVAQQTQKATYDKRAQERSLQA
GQKVLVLLPDTENKLLKCWQGPFEVTRQVGPVDYEVFKPGSRRERQIYHVNLLKEWRDQEGLLVNPSPPEEEFGREVGPE
PEPGAGDAIVPVGAQLNPQQQRQLGALVKEFRDVFSEIPGCARGITHCIITPPGQIVREKWRRIPHYRYNAICTELTKML
EQGIIQESRSPWRSPIVAVTKPDGSLRLCVDFRKVNTISRFDAFPMPQISELLERVGQARFISTLDLSKGYWQVPLRRED
RAKTAFGTPWGLYEFKRMPFGLHGVAATFQRLIEWVLAPHQQYAAAYIDDIIIYTQGWEEHLEAVRAVLQELRQASLMAN
PKKCVLGKAETKYLGFMVGRGQVRPLADKVEALHQFKPPQSRKQLRAFLGLAGYYRRFIPQFAEITAPLTDLLQGKRGGP
LQWDAESTQAFEQAKRALCHEAVLGTPDFEVPFTLQTDASERALGAVLSQEVDGVSWPVAYASQKLNPQERRYATVEREC
LAIKWGIDYFRYYLLGREFTLITDHAPLRWLRTKQTDNARITRWALALQPFHFKIMYKPGKTNMVADFLSRCHEDEDKGE
PGVTGGEPIMLDPREEGAPNGELRGEV
>Gypsy-44_NV_pol#LTR/Gypsy 1290-5714 (may start later) [Nematostella vectensis]
MLSLWGTRSHTEKLYKHSIFGKQEGAFVEGQPKAVNYQPHMMTVLKSLIGDANECITFVNGSPCLALLDTGSQISSISQS
FYEKHLKNCPLNSVDNLIKLVGAGGEQVPYIGYIEVEVSFPEEETGVHLEECALLLVVPDNDYNKRVPAVIGTNIAKAFH
VRCKEKHGVQFVQRVQISTAWRRAYASLHKREHFNTKQSNGKVEVKSTLRHDIVIGAHQRTVVWGLTQSYPGGDSLAILE
TAGDNKLHPDLTVTTSLISLRGNGGKCKIPVEVTNISDEPVVIKGRTKLACISLASAVHEPIIEPDRGSIGDIDKSSFHG
LFDLSGVQLNSDQKERVNIMLNRMQGAFAKDAQDLGCTGVIEHEINLSDDGPFKETTRRVPPGQLEEFKNALNDMLNSGV
IKESKSPFASPVVLVRKKDNSLRVCVDFRRLNSKTIKDSYAIPRVVDTLQSLRGSKLFCTLDLQSGYLQVCISEKDQPKT
AMTTPFGLFEFTRMPFGLTNAPATFQRLMEHCLRDLNYNTCVVYMDDVIVFARNFDEMMVRLEEVLTRLMKCGLKLKPSK
CKLFQTRVRCLGHVVSAEGIEPDPEKVAPLHEWLSNPPKNTKELQTFLGFASYYRSFVENFSKVAEPLRQLLITGPAKKH
KQSSPPSSFTWTSECQSAFETLISHLTSSPILGYPDFELPFILHIDASGSGLGAALYQKKHNKLRVIAYGSRALTPAERN
YSAYRREFLALKWAVAEKFRDYLYGAKCDVLTDSNPLTYLVSSAKLTPTDHRWLSALAPFDITITYRQGKSNGDADGLSR
IPREGSEPTPEDKEDYLKPFLERLQTSEEASTCPKEVFQAIVQSLVVDTDDTPEWIPVAEQVGARPEAVAVDFQEHQRFV
PSSTPFISENDWPRLQQADPVISKVLPFVTSGLPPTRRELRKLNSNAARLVKEFERLVVIDGTLKRRREVDGETSLQLVL
PSKFHAQVLKGLHDDVGHLGRDRTQDLIQSRFYWPFMARDVEAHVSNCQRCIARKALDPPPAPMLSLQANEPMDLLAMDF
LSLEEGRGGMSNILVVTDSFTKFAWAFPTRNQKAGTVAKILWEKILINYGFPRRLHSDQGRDFESNVIRDLCLLAGITKS
RTTPYHPQGNAQTERFNRTLLDMLGTLDGDKKSSWPEYVSSMAHAYNCTRHQTTKYSPYFLMFGRHPKLPIDVTLGVASE
IAPTKSLSSYVESLRARLDYAYKLASKEKDAAADRNKKRYDVRARDVALQPGDRVLVRNLSIRGKHKLSDRWEETVHIVE
ARQADLPVYTVRPEQGGRARTLHRNLLLPVKRTYQPVGLPPDHNSRPRRPQGGKRRRRILPQVPPRPIRQEAQDDSSSAE
DSDGLDLFGVPTAGPPELLFQAEVEEQDPQVADEMEDTAPPVVENHAARPPSLASSDVSDVQSKPEPRTRSGRVSKKPQR
LVEDPVWSRKLTAMIYLIDCRNQKVSRNWHLSHY
>Gypsy-46_NV#LTR/Gypsy 41-3835 [Nematostella vectensis]
MEHMKPMGPLKLEGNIAENWRKWSQRWNLYAKASGAESKPEATRCAIFLHTIGEDALEVYDTFTFADSETDKLEPIISKF
EAYCTPKKNVTYERYIFNSCAQNGRSIDVFVTDLRSKAKTCEFGTLQDSLIKDRIVCGIDSDSIRERLLRNTELTLDTAI
NAVRAAETSKTQIENLKDGASLEAAALNKRGTARRNQKQHNQRNPKREDRKTCGRCGSSHKPKECKAFGKECFKCNGKNH
FSSMCKSKEVPPKKVHDLEKDSVSESDDSIDELFLGEIDSTKSDANELFVTLNVENKDIKFKVDTGAQCNVIPEEIYNSL
PQKPRLQDANIRLSAYGGMKIPLLGKCSLAVRRDGNELTAEFYVVRANKAKPLIGLETCRILELIRIGRNVSEISKGDAE
ILNEFNDVFEGLGLVDGEYHITLSNEAQPTIHPPRKVPLSLMPKLKETLEKLTKMGVISKVEKATDWVSSLVIVEKKNGT
LRLCLDPKELNNAIKREHYKPPTAETLSSKLSGKRVFTVIDMSNCYWHKKLDEESSYLCTFNTPFGRHKFDRMPFGISVA
ADVAQKLVDDNFSDIPGVLAVHDDIIIAGSDKAEHDEALSRVLLRARERNIRFNRDKIQLRVNQVKYLGNIVTADGFKPD
PEKIKAIKEMPQPETKQDLQRLLGMVNYLSQYIPNMSEITAPLRSLLKKNAQWVWYDEHKQAVDKIKEALTNSPVLRYFD
INEEIVIQCDASQNGMGGCLIQEGHPVIYASRSLTDAERNYAQIEKELLAIVFTCERFHQFIYGNDIIVHSDHKPLEAIM
AKPLSQAPCRIQRLLIRLQKYNITVRFVPGKEMFIADTLSRAFLIEDTDEQQDLNEDIEVCVHSFVKEIPATTDRLLELK
HASENDVTLQELRKQLIKGWPSHKREVKPIIAPYWTIRDELSEAEGLLFKGNQLIIPTSMRETMLNLIHESHLGIEKCKA
RARAIIYWPGMSRDICEKVSKCKVCMEHQHKNIKEPMLPHERPERPWQKVGSDLMELKGKDYLVVVDYYSKFIEVCLLRD
KTAATVKSHMKSIFARHGIPEELVADNVPYNSKEFKDFAKDWNFKLTTCSPRFPQSNGRSEKAVQIIKRILKKSDGPYIA
LLEYRNTPVTGMSYSPAQLLMSRTTRSKLPVNKELLVPSVPTGVREELKACQDKQAKYFNRGAKPLAPLTPNEGVRVYDK
KKWIPATVKQEAGTPRSYIIQTETGQELRRNRRHLLKTNEQAPADQRDLARHLLDMDTTNRFDF
>Gypsy-45_STu#LTR/Gypsy 222-4802 Gypsy-25_ST and Gypsy-31_ST products very similar. [Solanum tuberosum]
MNTRRANARRMEDDNVNQGAPPQAPIDPLVENVTHAEFRSTIQMLAQAVTAQANREVVAPVNPNVNSAASRVRDFARMNP
PEFHGSKVEEDPQRFIDEVYKVLAIMGVSSEEKAELAAYQLKDVAQVWYDQWKGERPVGAGPVEWELFKSAFLDRFFPRE
LREAKVEEFINLRQGSMSVKEYALKFTQLSKYAPTMVADSRDKMSRFLTGVSDLVEKECRTAMLHHDMDISRLMVYAQQI
EESKLKEKNREVKRARTGDGNFSNARSDGQGRPRFRQRFSNQGSSSAPPRVNKDRVSNPKPQGGNSGGSYVARPNCAKCG
RKHDGKCLVGTDGCFSCGKSGHKMRDCPMLKVKGREDKQAPPSGSNSNAPKQNRFYALQSRGDQESSPDVVTGMLKVFLI
DVYALLDPGATLSFVTPYVAMKFDMLPEVLLEPFSVSTPVGDSVVAKRVYRRCPISLSHRVTLVDLVELDMLDFDVILGM
DWLHACYASIDCRTRVVRFQFPNEPILEWKGGNSMPRGQFVSCLKARKMISKGCIYHLVRVRDVESETPSLESVPVVNEF
PEVFPDDLPGIPPEREIDFGIDLLPDTQPISIPPYRMAPAELKELKEQLKDLLDKGFIRPSISPWGAPVLFVRKKDGSLR
MCIDYRQLNKVTIKNKYPLPRIDDLFDQLQGASYFSKIDLRSGYHQLRVRGVDIPKTAFRTRYGHYEFLVMSFGLTNAPA
AFMDLMNRVFRQYLDMFVIVFIDDILIYSRSENEHVDHLRIVLQVLKDQQLFAKFSKCEFWLRSVAFLGHIVSSKGIEVD
PKKTDAVKSWPRPLTPSDIRSFLGLAGYYRRFVEGFSSIASPLTALTQKKAKFVWSEACEKSFQELKDRLTSAPVLTLPE
GTDGFVVYCDASRVGLGCVLMQNGKVIAYASRQLKVHEKNYPTHDLELAAVVFALKIWRHYLYGVHVDVFTDHKSLQYVF
SQKDLNLRQRRWLELLKDYDMSVLYHPGKANVVADALSRLSMGSVAHVEDEKKELVRDVHRLARLGVQLVDSTKGGVMVH
NGSESSFVMDVKSKQGLDPILVELKESVLKKSVEAFSQGGDGVLRYQGRLCVPDVDGLREQILEEAHSSRYSIHPGATKM
YRDLREVYWWNGMKKDIAGFVAKCPNCQQVKVEHQRPGGLSQDISIPTWKWEDVNMDFIVGLPRTRRQHDSIWVIIDRMT
KSAHFIPVKVSFSAEDYAKLYIREIVKLHGVPLSIISDRGTQFTSHFWKSFQKGLGTKVKLSTTFHPQTDGQAERTIQTL
EDMLRACVIDFKGNWDDHLPLIEFAYNNSYHSSIGMAPFEALYGRRCRSPVGWFEVGEIALIGPELVYEAIEKVRLIRER
LRTAQSRQKSYADVRRRDLEFEVNDWVYLKISPMKGVMRFGKKGKLSPRYVGPYQILKRIGKVAYELDLPNELAPVHPVF
HVSMLKKCIGDPASIIPLEGLGVDESLSYEEVPVEILDRQVKRLRNKEIASVKVLWRNHLVEGATWEAEADMKSRYPHLF
PSTPIQA
>Gypsy-42_BG_pol#LTR/Gypsy 1651-5411 via tfasty with MAGGY_pol, 3 frameshifts and 1 stopcodon. [Blumeria graminis]
NLARFNPSSASLNPFRPETTDQVIHTFDLGNEKPMTITSSLSDNLNAITMTITSSLSDNLNAITMIDSGASSSFIDEAFL
KQNNLTPRKKNHPEIVRVVDGRQSSSGKITHEIDLTLRIDTHLEVLTFQVTRIARYNVILGKSWLSKHDPEIKWSSNIIS
FTSVYCQNNCINLDNSQNLHPLTSHPSPVESLPRTPGLHKTMDIAPVSISSILRIGKSWNRQVFSVSIEDISKYLDKPQI
SLEEEVMNLRQSIPPKYHEFLSVFSSKDAERLPPHRYIDHEIPIDKRKKLTLGPLYSMSNSELEALREYLRENLEKGFIE
PSTSSFASPVLFVKKPGGGLRFCVDYRALNAITEKNVYPLPRIDDSLRQLLDARIFTRLDLRGAYNQIRIKPGDEPKTAF
RTRYGLYQYKVMPFGLTNAPATCQQFVNDVLREYLDLFVVVYLDDILIYSENPAQHEEHVLKVLGKLREYGLFCKPEKCE
FGVESTTFLGFVVSPRGLSMDPSKIQTIQEWKPPSNVRGVQSFLGFANFYRRFIRKYSEIAAPLFQLTRKDTKFLWTSAC
QSAFDALKLAFISEPILRHFDPSLPTVLETDASNKVISAVLSQIHTGSGSIKKLHPVAYFSRTMTPAEINYTVGDKELLA
IVESVKEYRQYVCNLASPVRIITDHQNLTALTTKRILNGRQARWAIRVGGSxFPLEFRPGVKNSRADALTRRSEDLAQSG
KISRDDLIIPPAKIHSQSISALLKEHAYPLFVTPLFVQPRSSQPRLSHYSSSLEAKEKFPALILDKSFVKEFKNSLDSDL
FGQEIIKALKSSITRHPCVDLGSCRISDNGLLLVSEMIYVPESLRTKIISISHDHPAVGHPGRAKTLELVSRHFWWPKIR
TSIDQYIRNCDTCARIKPVRHAPYGYLKSLEIPQKRWESISLDFITGLPTSAGFDALLVVVDRLTKMGHFVATKTTCSAS
ELAILLRDNIFRLHGLPESVVSDRDPVFTSKLSREMASCLSIKLRFSTAFHPQTDGQTERVNAILEQYLRAYCNYQQDNW
HDYLSMAEFSYNNSISSSTRVSPFFANYGFNPRYQFSLVLLSQQTLELNKFQQKLEKLEDFIRSEIKYAQHVSAESANSG
RIPPPIFREGDKVWLLARHISTTRPSNKLDHKRLGPFKILKKISSHAYKLKLPSTMRIHPVFHVSLLEPAATDPLPGQVK
PAPPPIIVDGEFEYVVEEILDAKPRGSKPFLVKYLGDPIPTWEPYEFVRDLEALDKFYARYPSKHYSRS
>Gypsy-37_STu#LTR/Gypsy 1410-3890 Not a pol. Doesn't look like any other protein yet. [Solanum tuberosum]
MSSVTSEYCGDDIGEYACSNMSYEHGENEFCEGYDGPYEHGNGALVYDGDSYEGYDGPWDNEQHGGENYYSGDDFEMNGT
YDSCDDVEGMEEPYGVYHCEDEGSHATHHGYDGDVRYNSFSHRSYESFEQNIDRNGGCEVEFTTSSCATSYPKKEGIDVW
VGPFQSRRVDHRRSTFPTSRNMLTYSSHPSSNVSCSPYGDEVEGRGGGTLSHEVVELRESFTTLREDFDDFLRMFEKVTS
MVQKRQVIHHEDTHKELPLEEKQDTPCKVGTKELHMEVKTPTPCAPKWKLNLKGSSNPSKGILGTCPNSHKIERQKIERS
KGVKSDNSRVEKGEVGWSAVRGLSHFSPNSCNFTFSSCLKICAGILGSKPNEAPQNVKNHEVLESFQNEKMCSNVDSQGD
DTSSYELQGNNANAYTSLNLEHHCVASSPLSVNNSLSLCEHSESLPCDVLDSTFLCDDNILVVSEQALVDPFDDRIDSSS
KVNLCPPSVGINDLNESLDHSNISCFSHVNLEVECLLKDNLLFDDDMTLESVHSEMPYNVGSVATLSGYQLFENPLWCDD
TLSKDGNLFCEDDSTFIGEGSVKMKGDGYVLNVTSSLCVPILHMNCNSLVYKVGAKLGNNLIEVHLCDTFLYYLFAYDDV
STFEWSTMIFEAKGANRVNKGVLDPCSWISFPFDPGNELNCGTCLVMLGQDDKHNLEEFVGTFPYDGKFFLRVYNLLEGP
MLCMGKGSFLTPFLYYLFAYDLVDCASHEDKSYLSREGEVYLKFVMLSLCVPSCDVMSARILKPSFNLAYRNTLDDPYVH
DTFLYYLFAYDESHICLKWALHFGRYH
>Gypsy-37_DWil_gag#LTR/Gypsy 918-2216  [Drosophila willistoni]
MSDEDTGNINIRETPIDTAPSTSAGMRTRSQTQLLQEQAARSQSFVSERSNVETGLTSIGENIIDHDQFRTLQNELMTAL
TAQMARLIETNVTACMQKFNPVAPRRTSPLYQIDQLDLNNWNMSGEDQRRGDYGQRSSASRSVESDLLQRPDKVSHIMNG
WKLKFTGKGLSIDHFIYRVEALTHQTLEGNFDIMCRNASSLFEGKANEFYWRYHKSVGQIRWSTLCTAFKKQFKDLRDDG
DIEEDMRRRKQDVNETFDQFYDAIITLSDKMDHPMSNNRLVRILKNNLRPEIRHEILNIEITSVSELREVCRKRESFLAD
VKRSHGYYKKTPFKKEVSELLPSEQDLEGSDIEVEDEMEIDALSLICWNCRREGHRYQDCLEERRIFCYGCGLDNTYKPN
CAKCAKNGYKSAQNVGHRPKVMRAPKPNSQSNK
>Gypsy-41_NV#LTR/Gypsy 19-4488 [Nematostella vectensis]
MSNPKRPELKLAGNISENFKNFELRFNDYCIQANYRDLGKDPGTERLEHYKSPLLEISALRSSLPDEALSVLRYTIEPQI
PEGEKKKPWIWMEKLRAHYTGTTGSSLLTDRFKFWTSCQQKHESIQEWEVKVRQASSLCGYGELNDELSRDKFIFGLSEE
QMRTELLKTHIKPDTSKKTLTDVVSEAKSIESAKKTSKLIADSSAKGIEEEVHWTGLRHSQMKLRREPGTCFWCGDRRGP
HPWKECPANGKSCSKCAGNDHFARVCLEEHNPQASGSNQRQQQARGRPQARGYNQRSRRGYPRARASPRPRDVHYTDICE
EQQYGSAPNPDYGFDMYALEAQVHNIDTDSPSKSPGKRYFTTLPLSTTGSSFKPVKFQIDTAATCNTMSYNTLQSVLPDA
EIKRSPYLLYPYGNSKPLQPVGQVELVCDKSDKYETLVFQILPDSCIGLKPALLSGSDSELLGLIKVQAEEIHSLSSSVV
HTATKTEDLPGFQTTPPKVDEVSQHGIRPPHETKTPLECNHLQQVHEITTNPCQPTPSPSAPIRVTKDLRLQPPGNLRKE
DILTQYADSFEGLGFLGPPVHFQLDESIQPVQMPVHRIPVAKREKEKEALDRYVKAGVLAKVTDPTSWCSNELIRETPKK
FRVCIDPSQTVNKAINRPIHQMPTLNEQLHKLSSARCFSLVDVKEGFLHIPLDEESSWLTTMHTSYGRYRWRRLPFGIKS
APEEFQMRLLTALEGLEGIICIADDILVFGEGKDFAEAEKDHDRRFVALMERCKQRNIKLNAQKLQFKLTELKFMGTIIS
DEGMKPDPDKITAITEMPTPNNKQALLRFIGMVNYLAPFCPNLSTEIQPLRMLTQDAVTFNWSEAQDRAFKKAKQLISSA
PVLAYYDLHKPVVLQTDASDYAVGGALLQPNDEGKLQPVAFTSSSMSPTEQRYSQIEKECLAICNGFQKFDQWLYGKSDI
EVHTDHQPLETIMKKPLNKAPARLQKMIMKLQRYQFKLTYKRGPTLYLADTLSRAALPQPIAAKVTSFEVFRTEMAARDT
DKNPRLTENTESQIREETSKDTTLAALQDVIIHGWPEDKTRLQHSLRPYWCYRDELSVQNGIIYKGIQVMIPQSMYKTML
SKIHANHFGAESNIRMAREVLFWPGMRKAIQDACESCGTCAQYGQSAPKEPMRSLPIPTRPWEIVSQDICEIDKQNYLVT
VCHFSDWIEVDKLEDTLAPTVIEKTQAHFARYGIPVNCHTDNGPQFISKEYRQFSADYGFKHTTSSPYHPKGNGRAEAAV
KVAKSMLKKANDFQNAMLMYRNTPPQGHTYSPAQRMFLRRTRTTLPTTEQLLAPSMVNFETVKQEIVKKRSETKAYYDKT
AGTQQRSLDIGNYAYAKPRPNQRGQPWRYGEVVEKDETARSYTIRTPRGINIRRNRVQLRPAAPPPTDDRLQMMVMRYPA
SEPYIANPIQPSSVSPQGSPTIHRRYTKARFRHTRLKRSINQTPWMGSR
>Gypsy-42_AMi#LTR/Gypsy 59-4211 [Crocodylidae]
MQPAAMTPPDLLGQNLQALTQIIDAQQQMIDRQQDWLRHSVTAFKMPKMTQDDDPEAYIEAFERHALMTGLEKGYWASQL
GALVVSRAQAAYRALARDEARDYEQVKDAILYRLEINLEYYRKQFRAKKAPDERRPRVLMQLLRDLLNKWVSPAKYDRDA
LADQILLEQFQNDLDECTQRWVRQHTPTSCDEALRLAEAFAASEIVFGRERPTQNPGNAQPRETERKRAPFRGGPREVVC
FRCGKTGHLSRECPNGPAERWRPDNAPKGSVERRRETNSGEPMDCSYAAGGDGAVWSRPVVRAWMGNRSVQATLDSGCAQ
SLVRADLVPTRWGNWATPVRMACLHGETERIERRWVHLRVMEHQGELLVGIASRLACEMLLGRDWPPIYDVLERVRDAEV
RRWQLKERXGWLGELEAGREPEGNTEESDLREMISGPQFREAQEEDEELRAIKGPLLETEVDQPEASLRIPRYEVRGQLL
YRVQRGRPGVQEEAQLVVPARLRQVVWQLAHANPMGGHLGRDKTTARVARWFFWPGLGEDIARRCAACPECQRAREDRPA
RAPLQPLPVIDVPFSRVAMDVMGPLPRSSVGHQYVLVFIDYATRYPEAVPLRAATAPRIAEELIKWIARVGIPKEILTDQ
GRNFMSGVLQVMCRTLQIKHIRTSVYHPQTNGLVERLNGTVKRMLRRCIQDDPQRWDLLLPLILFAIRDTPQDSLKYSPF
ELILGHRPRGLLETLREDWEXDAGAARTPASYQQEFQRRIRIAQGLARDNLREAQQRQKTRYDGPAREREFRAGQRVLVL
LPTSTSKLLTQWQGPFEIIRRVGPVDYEVHRPGHRRERQIYHVNLLREWHEPEGWATFSENEMVDLGPQGGTKEGPAACP
EDHVQISEELPAPQRVEMRTLVRSFRDIFREDPGWAQGVYHRIHTPPGKIVCEKWRPVPHHLLGEVREEITRMLEQGVIR
PSXSPWRSPLVPVPKPDGSLRLCMDYRRLNEIAIFDAFPMPHVAELVERIGNAHYITTLDLAKGYWQIPVAKRDRAKTAF
GTPWGLYEFVRMPFGLHGAAATFQRLMDRILAPHAEYAMAYIDDIVIFTRTWDQHQRALQAVLTDLRETGMTANPRKCAL
AQRQTKYLGFLVGRGTIKPLADKVETIRNCTMPRNSKQMRSFLGLTNYYQRFVPRFSELAAPLTEALKGRKTGTINWTPV
MKLNFELLKKALCENVVIHTPDFHKPFILQTDASETAIGAVLTQEDEGIERPVAYASRKLLPAETRYATIERECLAIRWA
VEHFRYYLMGREFKLITDHAPLQWLSRAKIDNARITRWALALQPFKFQIIHRPRENNVVADFLSRCHTTEESLNTANRMT
TGQGTQGRQPGQSLRAPQGILRGGV
>Gypsy-41_STu#LTR/Gypsy 225-5224 via tfasty with Gypsy-24_ST, 4 frameshifts and 2 stopcodons. [Solanum tuberosum]
MVNTRFNGVRPVAPVNAPAEESAARGRGRGRGRGRARGRGRGRVAPTRGGARLRMLPEMRPLLRIMKRxRRMWRLRMRRM
LDKRKRCRLRLQCIPPLDPVLAQQIMSFLKGLVGPGVLPSVQATQAPANPPIAVTVPKVGGTVGTDAFFRPLLGPVMTGN
EHEMLTKFLKLKPPVFHGSESEDAYEFILDCYERLHKLGIVHQHGVEFVTFQLQGEAKQWWRAYVECRSSALPPLTWTQF
HALFLEKYVPRTLRDRKKDEFMALEQGGMSVAAYEAKFHALSRYATQLVTTEEERIRLFVKGLNSELQVLSVHMTSAGKS
FNEVTDFVKKVEGVRRDGQAKALAKKAKSTGNFQGSYSRGSGRPTLAARPIQSAMPASTGSYSGTPHQNFIQDSQGAAPS
AGSRPSFDRTCYNCGEPGHMRRDCPHPRMLDSAQQQTRAVVPAGNGNNGRGRPQGGRGGNQRGRGGRGNGNAGRGAAQPG
REVARQDDRAQCYAFPGKTEAEASDAVITGTILVCDRMANVLFDPGSTYSYVSVQFALGFDMICDVLDAPIHVSTPVGES
VIVTHVYRACPILFMGFQTWADLVILDMTDFDIILGMTWLSPYYVVLNCNTKSVTLEIPGREKLEWEGVYKPKPAKVISS
IRARKLVGRGCLAYLAHIRDVEVESPSIESIPVVSEFREVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPVELR
ELKAQIQELLDKGFIRPSASPWGAPVLFVKKKDGSMRMCIDYRQLNRVTIRNKYPLPRIDDLFDQLQGASVFSKIDLRSG
YHQLKIRPEDVPKTTFRTRYGHYEFLVMSFGLTNAPATFMSLMNGVFKPFLDSFVIVFIDDILVYSKSKEEHADHLRIVL
GVLGRQKLYAKFSKCEFWLDSVAFLGHVVSREGVMVDPQKIEAVKNWVRPSSVTEVRSFVGLASYYRRFVKNFASIATHL
TRLTKKEVPFEWTEKCEESFQKLKTLLTTTPILALPVEGKDFIVYCDASHSGLGVVLMQDKNVIAYASRQLKVHERNYPT
HDLELAAVVFALKIWRHYLYGVKCEVFTDHRSLQHVFTQKDLNLRQRRWMELLKDYDVTIQYHPGKANVVADALSRKAVS
MGSLACLSVSKRPLAKEIQTLESKFMQLGISEKGGVLASIEVRATFIEEIKAKQFEDENLNELRKKTVSGKAQDATLDAG
GVLSFKGRICVPRVDDLIQKLLTESHGSRYSIHPGVTKMYRDLKRLYWWPGMKKDIAEFVAKCQNCQQVKYEHQRPAGLL
QRMPIPEWKWERIAMDFVVGLPKTLGKFDSIWVVVDRLTKSAHFIPVRIDYNAQQLAKVYVKEIVRLHGVPLSIISDRGT
QFTSKFWRKLHDELGTQLTFSTTFHPQTDGQSERTIQVLEDMLRACVIDFGGHWDKFLPLCEFSYNNSYHSSIDMAPFEA
LYGRGCRSPIGWFEAGDVKPLGVDLVKDAQDKVRSIQAKLLAAQSRQKKYADHKVRDMAFQTGEKVLLKVSPMKGVMRFG
KKGKLSPRYIGPFEILDCVGPVAYRLALPPSLSGVHPVFHVSMLKKYHGDGDYIIKWDSVLLDKDLQYEEEPIAILDRDV
RKLRTKEIKSVKVQWKHRPVEEATWETEKDMRDKYPQLFDDSGTISTLTLASFSxFVTRGRVMGKLVS
>Gypsy-16_NV#LTR/Gypsy 28-3600 [Nematostella vectensis]
MDKVLRPERLETDPNSSTAQKEWLHWKRTFENFVQVLPQTGLDKLTVLTNFVSPTLFQHIEDCTEYDAAIEALQALYVRP
RNEIFARHLLATRRQQPSESLDEYLQALKTLSKDCDFKSVTAAQYSEESIRDAFITGLQSNTIRQRLLENKTLDLKTMFD
QARALESAMRSSESYGAPQIPINAALPCNSTSLSAEQPDESTVATMKPDKATCFFCGNKKHPRPKCPALEAICNKCQKKG
HFAKVCKGKAVPKERVSAATWSPILATLTANPPKSLSKSCGVVNIQGLQVKALFDSGSSESYIHPSLVEQASLTVQPSSS
TVSMATSSTGAIKVSGTCTVDLTYQGRRYEGLKFSVLPGLCADLILGVDFQSKHESVIFQYKGSEPPLSVCSFSTLNVDP
PEPFANLTADCHPIATKSRRYSQEDSTFIDEEVKRLLNEGIIEPSRSPWRAQVVVTKDENHKKRLVIDYSQTINRFTLLD
AFPLPRITDLVNQIAQYKVFSTIDLRSAYHQIPLKDEDKPYTAFEARGNLYQFSRLPFGVTNGVACFQREMTKFVEENNL
KAVFPYLDNITICGKDQEEHDSNLQSFLEAAKRKNICYNNDKSIFSTRRLPILGYVVEEGNISPDPERLRPLRELPVPSD
SKSLNRCLGLFSYYSQWIPAYSDRIKPITSCKVFPLPEPAVAAFESIKKTVEEAFVSAIDESIPFEVETDASEVALAATL
SQNGRPVAFFSRALQGSELKHASVEKEAQAIVEAVRHWRHFLTGRHFTLKTDQKSVSYMFDQCHKGKIKNDKIMRWKIEL
SCYSFDIIYRPGKENIPPDTLSRATCATLSEDPLYQLHESLCHPGVTRLNHFVRTKNLPYSLEEIKSMTSKCPVCCECKP
QFHQPPKVPLIKATKPFERINIDFKGPLPSNNGNKFFLNVVDEYSRFPFVFPCPDVSTPTVIKCLTSLFTMFGMPAYVHS
DRGSSLISQELRDFLNEKGVATSRTTAYNPEGNGQVERYNGVVWKAISASLKSKNLPVKRWQEVLPDVLHSIRSLLCTAT
NETPHERFFGFPRRSSSGSSIPTWMSEPGPVLLKRHVRASKTDPLVDEVELLQANPHYAHVRYPDGRETTVSTKHLAPKG
EVPTMYPLPQVKPTVPGEHHPATGSSPPSSEIEVEIGVGEEVPQVSTGLDGQPPLRRSERTRRPVDRLNL
>Gypsy-15_HM#LTR/Gypsy 110-4165   [Hydra magnipapillata]
MTESGKGGVFPPMLDLTVDRFAAFRSWIEKWHDYVLLSDLEKKPPAYQAAMLRYTFSSETRNIYESLNLTEYEKTDPAII
LEKMEVFAKGIINETLERHKYFKRFQEDGECFDDFLTEVKLLSKNCNFCNTEDCFGSLLRDKIVYGIRCDKVREKLLSEK
TLTLDKAVEICRSSEKAQDGVSELRNNNSESVDRIGKQLYSKNKFNSPTQNSNNRDFKFNSLLCKFCLKKHPFIRGSCPA
WGKKCRDCKIMNHFSNSSVCLKTKPNIPDTCVDQQNDSNNSSSMQHLGALFLGRVGADCAERPWEIQLKVKYGKITFKID
TGAEVTVIGTNHLKKFGIKIEHLYTTNKRLIGPDYKPLNCLGYFQKSFSINGRNSELITIYVCDNVQTALLGKPALQKFN
LVKVDIPERFMCAMISKSKSNIIEQFPLVFKGLGTIKGNPVHITTQENATPYHIGAPRRVAFPLLEPLKIELERMKEMGV
IKIVDQPTDWCHPIVVVKKPNGLLRICIDLTQLNKHTKREFYELPSVDDTLAQLGNRCKYMAKLDANSGYWQLPMDIESQ
LKCTFTTPFGRFCPTRGPFGLTSLPEIFSKKMDQVIDGLKGVVKSMDDFLVFGNTEMEYNENLVALLNRFAENGVTLNVE
KCLFDQTEVEFLGHKISAHGVKPLTKKVEAIKNFPKPTNITSLRSFLGMAQQLSKFNPSLAKVAEPLRDLLSSKSAWFWT
ENHTRAFNEVKNSLTNPPILAHYDVKKPVKVRTDGSLLNGLSVIVYQNHNGIYKPIDCASRFLTTTEKNYYPIEMEMLAV
TWGCTRMSKYLYGLPNFILETDHKPLIPILNYRSLIDMSPRIQRLRMKLLRFSFTAEHVAGKSITDADAMSRAPVSNPTK
EDEIAENDLNVYVNSIIKSMPATESRLEEIKQKTAEDKLLNQLQESIISGWPNSKKYCPANIQPYWDFKDEIVKIDGLLL
YQNRIIIPVSMRREILSKLHEGHLGMEKCKRRARQSVFWPGLNNQIEQLIRKCEACMKYLPSKPKEPMLTPDVPTRPWQK
LGTDLFQWANKNYLIIVDYYSLWTEVFLLPNTGSANVIQACKESFSRNGIPEELVSDNGTQYSSKVFRQFSQQWQFKHIT
SSPHYAQSNGLAEATVKSVKLLIKKCYMSNEDIYKGILILRNTPIKCGLSPAELLHGRQLRDNLPRFQSQNKEQSKYSRE
IVKERVQSKKYYDKNIGVFKPYVYRQGQTVAIQNEVTREWSLRGKIMKCVAPRSYEVKLNHNGHILRRNQIQLRKVYAIS
APGVTRDNGAIMLRRQAIPSLEECNSGTTSSEMESENNIIEKNNLVENTKDRLSSRGRRIKNKVPIDYEDL
>Gypsy-17_DBi_pol#LTR/Gypsy 2214-5444  [Drosophila biarmipes]
MITIFDTRYTFYEIDGLDSDLLVGYNLLKKIGAVIDTAKGVIKYNGIEEKLNYDNGNILNQHSLTEENTILPLKEFILKK
YFDEKAQIRSESEMGNQSESSLGYTNPEHAVVEKSDKNKSLEFKNSEHAVVEISDKNKSLGIKNPERAVVEKSDKNKSLE
FKNSEHAVVELPDNQKINNIKISSADQRKDLENEILNIINEEHSKINMQIPFRTDIRGEINTVNDRAIYSKQYPYAQSAS
DFVNSEINRMLNEEIIRPSRSPYNSPVLVVPKKGFNEDGTPKLRLVIDYKKLNENTIPDRYPMQDPSVILSNLGKAKYFS
TIDLESGFHQILMNEPDIQKTSFSINNGKYEFLRMPFGLTNAPRIFQRAMDDILREQVGKTCHVYMDDIIIFSKTIEQHY
KDLILIIKILLNANMKISIEKSKFFKLETNFLGYVVSHNVIKTDPEKIYTIVKYPIPKNIRELRSFLGLTGYYRKFVQNY
AKIAKPLTKYLEGQNGKVSKKASRKTLIQFDDSAVRAFNELKENLIAQVELVQPDYNKKFTLTTDASDLAIGAVLSQEGK
PITFISKTLTKTEQLYATNKKELLAIVWAFKNLRNYLYGVNNIEIYTDHQPLSFSISQKNPNIEMKRWYSFIESYSPKII
YKPGATNVVADALSRIQINNLTESNESVSDQNTQHSAESSFENVIQETRKPLNQFKQQLLIATGRYTIHESINVFGNNRH
IIEYDTPENLVSILREYIPPNITIGVHCTLEDFYRIQKPLKDNFINKFLYTRTFVQDVENAEDRSLIITETHCRAHRGLD
ENYKQITRLYYWPNLYKKLKEFIKNCTICNQNKYNRHPVQIPIGQAPIPEREGENLHLDIFYAQNLIFITCIDSYSKYLV
VKEIPNKLNIENKVSEILQQFPLAKSLMIDNEPSFSSSQFKSFAQRNGISLFFADPRHSTSNGQIERAHSTLTEIARCIK
DELNLIDYPEIIIRAAQKYNLTIHSITNHRPFDILFNKIKHDDIPKLLQQAQEKMLHFHNKDRQNKNYHVGEVIYEKKHG
ERNKLNSRYKKQVVKENLPNKVIINNRNRTIHKDNIK
>Gypsy-18_ST#LTR/Gypsy 36-4743 via tfasty with GYLES1, 1 frameshift and 2 stopcodons. Gypsy-28_ST very similar [Solanum tuberosum]
MATEGDINAASTTNIRPDGGKKARKGKKHQKSPEEMLPDPTPSEALTSHPTTEASDEEHGEEAIDVTAGEEWVSRVEVAR
QAVEILGRRMNVADGKFKTLEDFTLEEIENIRKELEGRQRAEFEMKEAITSLECRLMEALNTIETMKAEMRTLKEGIEAG
GSASPDRDREARVEAPKPPMFKGVRDAQEVENFLWHLENYFKCNRVKSDENKINTAVLYLSEMAMLWWRRKEADIGKGTC
TIDTWEQFREEFKKSFFPTNVIYEVKRKFRELKQTGSIRAYVKEFTTLTLQIPNLTDEDMLFHFMDGLQNWAKTELERRQ
VKTIDEAITQAESLTDYKHERHDKAKGKDARGSHAKGGGDRGRGKEQQAHPRQPDSHKSDGKRFVRQNYTDRKAQTTKGD
GCYICGGPHGYARCPEMKNLGAILRERKEKDVQEQGQDVGTTQLGMVGLCGAIAKQTAKPGDFNTQYVDISLNGHAARAM
VDTGAETNIMTKTAAERLGLKYVPSNTRLKTVNAPPTPVCGVAQGVSITIGDWQGKTNFTVAPLDIFDIILGQEFFQRxA
GRVVHGTPTQNLKKEGHALLSAMQIVKGLKKGEPTFLATIASLGEDNGARETLPPIIEKVLEENKDVMPDELPKTLPPRR
EVDHKIELEVGAKPPAHAPYRMAPPELEELRKQLRELLEAGHIRPSKAPYGAPVLFQKKKDGSLRLCIDYRALNKVTIKN
KYPIPLIADLFDRLGQAKYFTKVDLRKGYYQVRIAEGDEPKTACVTIYGAFEWLVMPFGLTNAPATFCTLMNKIFHPYLD
QFVVVYLDDIVIYSNTLEEHVEHLRKVFQVLRENQLYIKREKCEFAQHEVHFLGHIISQGELRMDEAKIRAIQEWEVPTK
VTELRSFLGLANYYRRFIRGYSAKAAPLTELLKKNKPWVWSTECQQAFEGLKAAVTEEPVLTLPDFSKTFEVHTDASDFA
IGGVLMQDRHPIAFESRKLNETERRYTVQEKEMTAIVHCLRTWRHYLLGSKFVVKTDNVATSYFQSQKKITPKQARWQDF
LAEFDYTLEYKPGRGNVVADALSRKAELAAITTVHCDIQDAIKDGMQHDPEAKKLMELATQGKTRRFWAEDGLLFTFGRR
VYVPKFGTIRRRIIKESHDTPWAGHPRQRRTRALIEAIYFWPRMRDDIECYVQTCLVCQQDKVEQRHPGGLLEPLPVAER
PWESVTMDFITSLPKSDGYGTIMVVVDRFSKYATFIPATAGCTAKEAARLFFKNVVKYWGLPRHIISDRDPRFTGNFWRE
LFEVLGTKLHFSTSFHPQTDGQTERVNALLECYLRHYVSAHQKDxARLLDMAQFSYNLQRSESTGRTPFELATGQQPQTP
HSLPAAFEGKSLGAYHLAKGWEEQLDTAKSYLDKAASKMKKFADRKRRPTNFKEGDMVLVKFNPRQFKALRGVHQNLVRK
YEGPFKIIAKVGKISYKVELPPHFKIHPVFHASVLKPYHEDKEDTSRNRSQRAPITVTTSHDREIEAIIDYQAKRKRGQQ
ASAMFLVHWKGQSPEEATWERYEDLWQFKDQVREFLQQCAAVVASSGGG
>Gypsy-18_DEl_gag#LTR/Gypsy 1891-3195  [Drosophila elegans]
MEWNDLYAKLNEIKTEFDKSYKSLNQNRPIQGSTIKKHAEIVVNCFNEARILIHGQRGKLNDDHWSRVSKFLQRLRENLI
LIKEKFNLDISVPTILNTAITVETDEESTLEESTGVDQTEQENFNAEIKEEDLNNLTIPAVLLSNADNKTDSDSDSSANI
TKNNNFEMAQTNIDFINTASKLIPVFDGKAENLTSFIDALHIIESIKGEHESLAVSIIKTKLKGVARNLIGNETTVGEVI
AKLKSNVKGETVEVLSAKLMNLQQRNKTANQYTSEIEQMTKALESAYITDGLTLELARSYSTQHAVKAMTKNCTIDKVKL
IMQAGNFNTMNDVISKFVNSCTEATGQPNSVLYYNNYTQRGGNRGRGSYRGNFRGRGNNYGYYNNTNQNNGRGNYRGNSR
GRGNSSGGYNNNNTNNVRVANDTSGNSEPPLNAQQ
>Gypsy-15_DR_pol#LTR/Gypsy 2022-6686 [Danio rerio]
MEAKLYNSRPGCYKQIPELSQTTVSFKHLPKGLVGTKCTAQVTIGGMEVNCLLDTGSQVTTIPHSFYKAHLSDFPLEPLK
NLLEVEGANGQAVPYLGYIELTLKFPKEFIGAEVEVPTLALVVPDLTSFSQILVGTNSLDVLYGKCAQDCAADVKSSFPG
YQAVLKVLEARWRQASSETLGYVKFKGNSPEIVPAGGMVVLEGQAHFNGPHTEKLVTLEPPSVPLPNGLLIASCLHTSPN
KRLSKLSVLLRNTTQTDIAVPPKVMLAEIHAIQSVLNQHHQSSDAKAEESIPTCANLTFDFGDSLPTTWKERITKLLNSM
PEVFSLHDLDFGHTKKVKHQIKLNDETPFKQRARPIHPQDIDAVRRHLQELLVTGVIRESDSPFASPIVVVRKKDGSVRL
CVDFRKLNAQTIKDAYALPNLEEAFSTLTGSKWFSVLDLKSGFYQIEMEEVDKAKTAFVCPLGFWEFNRMPQGITNAPST
FQRIMERCMGDLNRKQVLVFIDDLIVFSDTLEEHESRLLQVLNRLKEYGLKLSPEKCRFFQTSVKYLGHIVSHNGVETDP
AKVEALKTWPRPRNLKELRSFLGFAGYYRRFVRDFSKIVKPLTDLTAGYPPLRKSCNTKQKDCEYFNPKAEFDTRWTTDC
QDAFDSIIDNLTSAPILGFANPKHPYVLHTDASTTGLGAALYQEQEGQLRVIAYASRGLTKGESRYPAHKLEFLALKWAV
TSKFNDYLYGAEFTVVTDSNPLTYILTSAKLDATSYRWLSSLSTYNFKLQYRAGSQNQDADGLSRRPHGELVDDLTSLKE
RERIRQFTLHHLMESEDESPVVMAEVVKAICEKHQVVGSPQGLHCIPSVTLVESLTHCVDVLPYEFQHEDEHGLPSLPHL
SQAALAELQRKDPELKIVIERVESGVKPCKLRELSSAVSLWLKEWKRLELRSNVLYRKRQEHGASSYQLALPTSLRNTVL
QSLHDDMGHLGIERTLDLVRTRFFWPKMSHAVVQKVKTCERCVRRKTPPEKAAPLVNIQTSRPLELVCIDFLSLEPDQSN
TKNILVITDHFTKYAMAIPTRNQTAQTVAKSLWDHFLIHYGFPEKLHSDQGADFESRTVKELCKVAGIHKVRTTPYHPRG
NPVERFNRTLLQMLGTLENERKSRWKEYVKPLVHAYNCTRHDTTGYTPYELMFGRQPRLPVDLAFGLPVDTPNKSHSQYV
ENLKNRLRESYEMATKNAGKIAERNKQRFDKHVVALTLEEGDRVLVRNVRLRGKHKLADKWEQNVHVVVKKAHNLPVYTV
KPEGKDGPLRTLHRDLLLPCGFLQSNKLVEPPKQKPARKPLTRFSLNNEMQESDLISENSESEEEHIVSNVPEGTLSFET
QIIVGPEYIPVGESGVSLTVLDPAVEDVSVPESVVSNPEEPAKKHLPGVEPVEKETNELIEVEKNSNALESSNTVPFVLT
EKNSELEQSSELWSESPDQTAKNVLDSFEWETEQNLIPSNVGHTEILQNEQPTCNEPDDILLRRSQRERRPPKKFEYPQL
GNPLTLVIQSLLQGLDTALCSSLEKSVVAPVRHL
>Gypsy-12_SMo#LTR/Gypsy 277-2274 [Selaginella moellendorffii]
RGSLGRVPIVPTTSPSSTHLSFYSSKNEWRWRIRRCTTTAAAANSSSARTAFYTHEVSFFLAHHAGNDADAHLNSFETVG
IANQEADEADRLRFFPATLQDAALEWYLQAQHSAPASIATWDLLRSAFLAAFRPVGFAQRVSEELNYIRLLPNESLQSFI
IRFRRLVAKKDPPPSEDDQVRFFANGLPPELAFFTKGQTPTTLAEAISTASSWEQARVSMARFQQPFYSVPSVLGGPPVI
PPTFPSLQTSAASQPYPSLTDPASLPFPGTVDYSRLQQHVLPAAATSSSALPQSQEISKVCDDLETLAKKMSELQLNWIR
GVQTPPQPVTERENIWCTRCKGYGHYPSECPSPAPARVKCQHCRRNNHRSEHCIYKPGTSAQPAPRTPARPSYHVQPQLL
QDPSPPLVLQGYTPDLVPVYAAAPARTSNVPGRGRARRPIICFRCRQPGHIAPECPNARAPVEYQPICGICNTQGLHAQD
DCPHRLHRDQGSQGDPPRRSTAPRNDPVIDTQVVQPCYGTIPALAVAHAAQTAHATAPSSSLRLLKRQARRLAATPQPTH
AAPAFAPSAYPNAAVAPRPAIQFEALPSPPSRDPNSGNATSFSHASPSDQEDSVSADKKKKYRRLETRPYDILGDLEHQK
PQISFSQLLHAAPELHKVVSSALRGH
>Gypsy-12_DSim_gag#LTR/Gypsy 298-1299  [Drosophila simulans]
MSVPQLSEIHLNQLLNQIKELNHYDGTPGRLSGFVNQVEQLLNLYPTQDARQAHVVYGAVKRLLVDAALEVVTQERATTW
MEMKEALAMAFKDHRPYTTIIKQLEETPYPGSISKFIEKLEIQYWIIFDKLELENDPVDKSNYTDMLNRTVKTVIDRKLP
DRIYMTLARKDIDTIYKLKQASMEVGLYDASPENHRPNRSEVNKHRNRGNNNQNNYQKYYSNRNQNYYHSGMNPSNNTQP
PQNSNQFIPNQNQYSPRPIPNHLRGNYHTYRRDLTQAQQNNPLNFQPSTSNNFNNNKPIKRQRESQSDQYRMDVNFHQAA
SDTQVKEKDTPVPM
>Gypsy-13_AA#LTR/Gypsy 181-4239  [Aedes aegypti]
MTSDSKSNPFQAASVQKMATVGRMDPFIPGEDFDVYIKRLRMYFIANGIPENLKAAVLMTVMGNETFQILDSLFSPEDPC
TKTFDQIVEKLKNQFKPMVIVSAERYKLYTRKQKVNEPIAEYVVALKHLAQSCSFGNFLADALRDAFIIGIHDQKIRKRL
LSEELDFDKAYKIAAGMELADAEEMNLKIESGLNHVVSGKKNVSVRSVKRGSAISRETIDEHRAKYCTRCGRSNHAVNQC
PAANVLCYKCRLRGHFANQCRTRNVHLIQDNDEEEFVDETVDLISWVAEGNEPLLVPVHIEGKEVIMEVDSGACKTIISE
NEYREKFYHVTLKQEPKSFQVITGQKFRPLGVGEFKVNMPNSNCQITLEMSVIRSDFKFKPLLGRSWLNVLYPGWKNRII
SQERNSVHTVENAQTDKVMTNGKREIVDYQGLVRREQVLGENKVNFLKALQEHFPRAFSEDNSEPIEEFEVDIVLKEHTP
VFHKAYELPFKMREPVEKELERLVADGILKPVKHSRYASPIVAVPKSDGKSIRVCVDCKRTVNPFVETEHYPLPRIDDIL
ASFPGCKVFCVLDLKGAYQQLALSEESKKYLTINTHKGLFQFQRLCYGVSSAPSIFQQVIDQILRGLKFVKSYIDDTLIG
GKNFAECFENLKRVLDRLNKYNVHINLEKCEFFLPQVDYLGHTLSEKGISPNSDKIKAIVEAPSPSNCAQLQSYLGLLNY
YSRFLPNASSLLRPLYDLLKKDTTFHWTEIHERAFKDSKRLLLSNNLLEMYDPDKKIIVSCDASPYGVGAILSHEINGEQ
KPIIFASSTLSAAEQNYSQLHREALAIMFAINRFHKYIYGYKFELHTDHEPLQAILNPKKCKSAIAVARLQRWAIQLSMY
NYVVKYKPSSKMRHVDALSRLPLTDDTKVDFVKSLNVSNDIPIDLEMVRKSSETDPLIKMLMKFCRSGWARTKQFDPELK
YYHKLQQCFAVENDCLVYRDRVVIPKEMQIKILELLHEGHIGIVRTKMLARQYVWWRNIDNDIEAFINHCSVCQQTQKKA
SSVTIPWPTPKTVLERVHLDLFYFGKYSFLIIVDAFSRWIEVCLLKTSNARTIIDNMRKFIVTFGLPKEIVSDNGPPFNS
ANFIDFCIRQGIKTTKSPPYHPESNGLAERGVQTTKAALKKFLLDHKYRKLTIDEQVDNFLFKYRNTPNAVSGISPAEMM
FSFKPKTLIDKLSIKSDKLENVQCKREKEKVTSTKIKHFVKGEKIMYMNHFKNFCKWIPGRVVDKLSQALYRIEISGNVR
IVHVSSIRKSNLHDKYHPNVSVARSTQVQARPHRVVLKKNIGSTKHSSQTKWSDFSKLRRSQRKRKPPVFYRC
>Gypsy-15_DBi_gag#LTR/Gypsy 287-1270  [Drosophila biarmipes]
MANPSALPQLSEIHLNQLIGQIKELPYFDGNPAELSRYIARVEYLLQLYPTQDARQTHIIYGAIERTIVDSAQAVIEEEK
SNAWVTTKAALIKAFKDHRPYEDIIQHIRDTPYQGSISKFVNELKLRSSKVHNKLELESDPTERLLYTSSLNKTIKDCIE
RKLPDRLYNCLSKKDITTLANLKEAAMILGHWDADPFDNYKPRRHDNRRYSGGSHQNYYYQKFNSQNYPKYNNNNSRDNN
NSNNSSNPQNSQNKNQIPTRNQGNYHEFKRNLDQGRAQNPLNFQASTSNNSPNAPVKRQRETDSAQNRMDVNFQQTASDT
ESVAHMSE
>Gypsy-15_Crp#LTR/Gypsy 58-4178 via tfasty with Gypsy-23_Crp, 3 frameshifts. [Crocodylidae]
MEHQAAGQIVDPMHQLLSVVVQLLQQQQQQSVRQTTLQEHWMQQQTWIPRGGAEWRMPKMTPEDDPEAFLEIFERAAIAA
GVDKAKWAGQLGTLLIGQAQAAYRAMSRSDAMDYEKVKGEILRRLDITPERRRQAFRERKAAEVRTPRILWQTLADLLGK
WLRPEIASKEQIIDLVLMEQFINDLEEETRNWVRCHCPTSSREALQWAEQFDAAQGERRRTSGPKGADPTARRAADSKGV
KKGGGQGPACFTCGRKGHFARSCPQGMRGGSLRERYHQDDHQASEGVPEVEAMDCGVGSHHQAHIQPLPKVQAWVEGVPI
QAVVDTGCTQSLVRPSLIRWEQAPQCEGINLVCLHKERSYIERRVLTVRVGETQRRIPVGLREGILYPMILGRDWPEIFD
ILALGRRGRSEGGGLAGEEGREADALQIGELTQSEPFRQEQETDPELRAFWEIDAREDTPQVSPTGRTKCTPRIEIRNGL
LYRVKRGRREGEEVAQLIIPRTFREQLLWLAHKHPLGGHLGRDKTEARLTRWCFWPHIYEDVDKYCRSCHACQKVSSHRP
QKAPLQPMPVVREAFSRVALDVVGPLPKSVAGHQYILVLIDYTTRFPEAIPLRVVTATKVADALMHWVAMFGIPREIVTD
QGSNFMSAVLKAFCKVLQIKHLRTTVYHPQTNGLVERFNGTLKGMLRRCTQEEPRKWSLMIPPLLFAVRDAPQASLGFSP
FELTFGHRPRSLLDVKREEWEAGPEHGGRMREYVQEMRDRLQAAQDIALANLEQAQVRQKESYDSRAQPRELKIGQKVLL
MLPDATSKFSTQWQGPFSVVRKVGPVDYEILRPGAKRERQIFHVNLLKEWREPEGLLISPGLGPGEERGRRREPKCPRRV
GEVPIGVHLSPSQRRQLTGLVHEFRDVFTERPGKARGVKHQIITKEGRIVRERWQRIPYHKRALVEKEIKMMLEQGIITP
SRSPWRSPIVPVEKPDGSLRLCIDFRRLNELTQFDAFPMPHINELVECIGQAKYISTLDLSKGYWQIPLREEDQCKTAFG
TPWGLFEFKRMPFGLNGAAATFQRLMDWVLAPHQRYAAAYIDDIIIYTDTWEQHLRALRAVLLELRQVGLTANPRKCALG
KRETKYLGFLVGQGCVRPLTDKVATIRDYKAPTTKKQMRAFLGLASYYRRFIPRFAEIAAPLVETTKGHRSGVIEWTQER
QKAFEEVRRALCQEVVLHTPNFAIPFTLQTDASATALGAVLSQEADGVERPVAYASRKLNDPETRYSTIERECLAIRWGV
EYFRYYLLGREFKLITDHAPLRWLHTTKTDNARIMRWALALQPYRFSVTYRPGRANTVADFLSRCEGEVEREGQEQTARE
ERVGRTPNGVLRGG
>Gypsy-19_BG_gag#LTR/Gypsy 149-1234 [Blumeria graminis]
MSDRGHSSNQPLQPDGLAVNYIRTLQELTTSLQRTQEEQAGIRTVLENLIAKSAINQTQSDSSSQSAAKIDLVEFTGADR
SIWPTWQLQAHGRAISSGPDPMVQFYAVFNKLKDTAAKNVTPWVFQNLKAGTATFEGLLQEMEKLYGDPAAKTKALTNLK
SMKQQERESFANFYPKFEKELANAGVCMADAIKVMFLRTALNSRFRDCLPKTKNYSQYEDLILDLQTAASAMANEEALHG
RRTTSRVPTWIPEPPAAISEAHTPMDWMPTTNNQAQATSAPNQRPRAQRVSRETLQARRDAGCCVRCGSSRHYQRNCPYL
PPVNERLGPXNNXRVVRRVDPAMVMAEPEIDVRNCEGLSENE
>Gypsy-23_Crp#LTR/Gypsy 61-4185 via tfasty with Gypsy-169_DR, 1 stopcodon. Gypsy-3_Gav_pol near-identical.[Crocodylidae]
MEHQTSVAGTEPLHQLMNLMVQVLQQQQQQTMRQTTLQEHLIQQQVWAQKGYAEWRMPKMTPEDDPEAFLEIFERAAIAA
GVEKAKWAGQLGTLLIGQAQAAYRAMTRGDAVDYDKVKGEILRRLDITPERRRQAFRERKTNEMKIPRVLWQTLADLLDK
WLRPETTSKEQILDQILMEQFINDLDDDTQNWVRCHCPASSREALQWAEQFDTAQGDRHRNKGTKGTDPTAKRGMENKGS
RKGSFPGPTCFACGKRGHFARNCPQEVRTGTSKDRDSQDNRPVLGILPEVESMDCGVGSHSRDKIQPLPEVQAWIEGIPI
QAVVDTGCAQSLVRPSLIRWEHAPRCTGVRMVCLHKQKSYVDRRLLMVQVSGVQRRIPVGLEEEILYPMILGRDWPEIFD
IIATRRRPRNERGGLVGAKYRMPDDLQTGDLAQAEQFREAQESDPELRSFWEVEAQRDSAQVSTPVRGKGAPRIEIKNGL
LYRVKHGKLEGEEVAQLIIPHAFQEQLLWLAHKHPLGGHLGKDKTEARLTRWCFWPHIYEDVERYCRTCEICQRVSTHKP
PRAPLQPMPLVREPFSRIALDVVGPLPRGVAGHQFILVLIDYATRFPEAIPLRAVTANKIAEELMKWVSKFGIPREIVTD
QGSNFMSAVLGALCKVLQIxHLKTAVYHPQTNGLVERFNGTLKGMLRRCAQEVPRKWSLMIPPLLFAVRDAPQASLGFSP
FELTFGHRPRSLLDIRWEGWEADPMPGKRTAEYVRDLRTRLRVAQGIAQANLERARARQKENYDSKAQTRELKVGQKVLV
LLPDSTSKFLTRWQGPFPVVRKVGPVDYEILRPGAKRERQIYHINLLKEWHEPEGLLISPDLETEELGMQAESSPDNNRE
KETVPLGKQLGARQRQQLMGLVQEFQDIFSEQPGKATGVEHKIITKEGQIAREKWRRIPYHKCPLVKREIEKMLEQGIIT
PSRSPWRSPIVPVEKPDGSLRLCVDFRKLNALTQFDAFPMPHVNELVEHIGQAKFISTLDLSKGYWQIPLRKEDQIKTAF
GTPWGLFEFKRMPFGLNGAAATFQRLMDWALAPHQGYAAAYIDDIVIYTETWEQHLQALRAVLLELRQIGLTANPKKCAL
GQRETKYLGFLVGQGRVRPLADKVAAIKNYKAPATKRHMRAFLGLTSYYRRFIPQFAEIARPLVETTKGRRAGVIEWNEE
RRRAFEELKRALCQEVILHTPNFAIPFTLQTDASAYALGAVLSQEVDGVERPIAYASRKLNDQEKRYSTIERECLAIRWG
VGYFRYYLLGREFKLITDHAPLRWLHTAKTDNARIMRWALALQPFHFRVAYKPGRTNTVADFLSRCEEEGQEAGKNKVEK
EERIERTPNGILRGG
>Gypsy-22_NVi_pol#LTR/Gypsy 2186-5477 Via tfasty with Gypsy-30_DR_pol, 1 frameshift. [Nasonia vitripennis]
MENPRNELLHDINPDGREVEXSHCPEIKIFIENIEVDALVDTGSEVTAISEEFYHQNYETLKLCPTLPICGKVIKGATGS
KSARLKIQLRLNTKFEKLSEKIIFLVIPKLVKPCIIGFDTIKLLKMLIDTVHEQILFSVKNNDGVITYVDKKMPRNEFTS
LTIQDAGGYTEKGYHTDLNNLYEDYENNYENPYELTIEEIDGKINSCENLNEAQRNILKNLIIKRKEVFEKKPGLLTTYE
HELIITDNTPWFCRPHPIPIADRQDALDEFDRMLKLNIIRRSNSVYINPIQIVRKRDGSVRPCLNAQKLNMVLQNNYEGX
PXIDEVLQRCADRPITSVTDFTASYWQIRLAENSRKYTAFKVDSHVYEFNVVPFGIKTSGSALIRGLAEATWDFNEFLVL
FVDDLMIKSRTFEEHIEHLDKLYERLIEHNLRLNFKKSKFFCEEIEFLGHYISAKGIRPDPEKIRTIRNFKRPKNLKQLQ
SFIGFINFYSKFTKHFAESLIPLLNLMRKNVLFHWTTEHQEAFEKIKTLFDDNIILKYADPKKPYILTTDASDFALAAVL
SQLNDEGEEEVVCFVSRTLKGSECSYFTTEKEMLALVWSLNKLDTYLRGAIEIRVRTDHEALTFLRTCKFNNQRLQRWNL
AIQDFNLNPTHIPGKQNAVADYLSRMDESEKSKAESQSEIIISAIVQQKPSRELINICKNIEKSQRRDPQTRTLIDELVN
NDEKTCKRYELIDHVLYKKAKERSKIVIPNSVLRDFINEVHAIYGHIGGGGGRKLNKMLCEHFYASGLRRKIAKILKTCD
SCQRTKHLTKKYREMSQPILTQKPGELLSIDFYGPLPTSAGGVKYLLTSIDVFSKYVVFYPLRRATAHAVIKKLTEDYIP
TYGKPEAIICDHGTQFTSDKFVNALKNENIKLVYSSIRHPQSNIVERVHRELGRFFRTFVSDKHKGWSRYVKIIQNIINE
THHETTNYTPTELHFGRKPMRVWEKYLYIPPEKDEITNEKRISLACEQAHRIALKRAAKKNAHAEHFELDIGNKVMIKAL
NVSDAENGKIAKFFDIYQGPYEVQKKVGIDTYLLIDINTKKERGKFHINNLKPYFED
>Gypsy-23_DAn_gag#LTR/Gypsy 56-1276  [Drosophila ananassae]
MGRKNWIYALRKEELCEVCRELGLAADGTVEIMRALVARWVDETKEDEVMVVARGFEEKFAQRTTPRQRAVSESEKLIQS
LAVPEMKTMRSMEPQVRKPVPVQVDYAKITRQVREWSFRFDGTGDPLEFVDRVAWSAKTYGMDINTIPRAMPELLQGRAQ
KWFLMNDEEWLTWKEFRRSFEAFFLPKGYFEKLADQVKQRKQQRGEPLGALGELMKPLGKTTKEVIDRLVENCMPRMKMF
MRPYACASLEEVMGLAEEFEELALEEEVFNRQSPAIDRRWPKEELQHKPPEQQSHPGQGWGQRWQPEEHRQMPQQQQPSQ
QWAGPRQQPPNQQWAANPIQRQPNIQRAATPGHVENPAQACNRCGGMGHWASGCRNPRMLFCRMCGAVGVRSTECCQRAG
NVQRSQP
>Gypsy-29_DAn_env#LTR/Gypsy 4785-6334  [Drosophila ananassae]
MPLSSFFLIFHTQYTLRHLTHSRSNLSPSYRTAEIMLITLTIVNARVTDYSHAQYIPITDGVALVWEQRNLLRHSSNLSE
FALMIEETSRLSDFFPESHMRKLLDVDTDHLRSLLSVLKVHHRIARSLDFLGTALKIIAGTPDAADLEMLKISDSRLIES
NNRQVIINTKTQNKINELTEAVNKIIRAKQNNMVDTPHLFEILLARNRILITEIQNLMLTVTLAKANIINPAIFNHNDLK
SILIDHPTEVPIISLIEASSIKIFQSDSMIHMIIAYPSIKNTCKKVTIFPVSHQHTILQLNENIVAECNNDVLAVTDCIP
TTYASFCKLATHDSCARGLHAGGTALCETQASHLSPITLVDEGVIIINECPAKVSTDNGPEIVTNGTHLVTFERVAYING
TKYSNIREAIRKTPGMAASPLLNIIGHNPMLSMPFLQRINNQNLEEIQGLKEEVKSAGSTDIWFAVGVAASIFISCSILL
MMNLKRKRDAQEIQQVVDKFQMTEDGHSLKGRVVNTI
>Gypsy-26_NV#LTR/Gypsy 13-4242 [Nematostella vectensis]
MASSTPFVKPPEVLEISSGNPAFAWKKWKQKFEIYLKATATSTKPDEVKVGLLLNHIGDKCLEIYSNFVFRPDQPNPDGG
DPIPGENPDNYKTVIEKFDQYFTKRDPQLMLREKFWLQLQREPNQSFDSWVVTVRERAAECKFPPEFLEQAIRDKLTFSC
VDDRSKLKLYDEGAGLSLDKTITILSMKEASSRELQESKTATIERVGLRAPGKTAPQYAQRSETKSQRRQPPDRCGYCGR
DHPRGKINCPAANVRCDKCTKVGHFAAVCRSKPNTRVSQVEDAHEGEVLEHNPTFVGRVLAVPQTDNTLPDQDKNVDITS
SENQVSEAEALMPEISTDYIRDPGWHVKLRVEKRELTWCIDTGAQVSVMPETVYREVYGKLSPSDRKLIGAGDTPLETVG
QTIMNLQLGEACIEECVYVVRGATKLLLGIPAIRKLGLIHEIPNTYSVRAIDCSANQQNEEPFTNKETIVRKNPHLFNGL
GKLSGEYTIRLKEGAKPFCLTTPRRVPLPLQKKVEQEINRMVELGVIEPVDEPTDWCAPIVVVPKPNGTVRICVDLTKLN
KEVRREVYQMPKVEETLGNIAKGSIYSKLDANSGFHQVPLSEESAKLTTFITPFGRYMFRRLPYGISSAPEYFQKKMDQE
LAGLEGTLCHMDDILVVGKDQAEHDKRLAAVLHRITEIGMTLNPDKCKFSEKKIEYLGQVIDNEGIKKNPAKVKAIVDMD
VPRDIPSLRRFLGMVNQLMKFCPNLAEKTQPLRDLLKKNSAWVWGKAQDDAFNDLKEEMASERVLALYSPEKETVVSADA
SSFGLGAVLMQKQPSGEMRPVAYASRSMTNTECRYAQIEKEALATTWALEHWSDLLVGMKFTVETDHKPLVPLFTSKMID
ELPVRIQRFRMRLMRYDFDTRHVPGKELYTADALSRCPLNEKRSETSCQSDHLYAEADCYVNTILLHLPASDKRLEEIRS
ELKRDDALKVVMHYVQNGWPETKQKLYGPVKKYWGERGSLSTHEGLLMRGRRLVIPSSLRPDILRYLHDGHQGISKTRDN
AASSVWWPGISKQIEEMVRNCATCEKYRKERIEPMKGTDFPERPWSKLGADFFQHEGRHYLHIIDYYSRDIEIYLVSKNV
TACDTVNKMKNAFSRHGIPDILVTDNGPQFASAEFNKFAATWGFDHITSSPRYAQSNGESERAVETIKNFLKKCDDEYLA
LLSYRNTPLHNGYSPSQLSMGRKLKTRVPCHPDELKPQLPDNDVVRKREREYRRQMREDYDRRHRVAEGEELAEGDRVWI
PDLKTEGTIIRPHETPRSVVIQTPKGLRRRNRRQVRRALGSPQPTYAATQYRAPILPERYTTPEAIQSQSSPLPVQQPSV
SDKETFNEMSGPTQGDGNRVPQPCPTPEQPTLRRSERVRRRPCRYIEEY
>Gypsy-22_DWil_pol#LTR/Gypsy 2348-5899  [Drosophila willistoni]
RRKFFRNCLREPTGYLTKKSHGSTLPFIWINSVTTQPIKFLIDTGSTNSFVSPTIVSNVDRKTLDNPITVQSVLNQHVIK
EKTTIQSLKEFNEQMKIDLLLFDFHPHFKGLLGMDVLRKLKANINLASFCLETPKSCLKISLQDNPVTEVHIIPASSKSL
ITLPVRMKEGNFYSQQTMYNKHLEISEGLYNSVNGYSKMVIVNNSLEDQQLYLEQPLETIPYDQNHYIEIYNINSDNQSL
PHVHKYVTKLKTDHLNSEEKIALIQLCSKYTDLFYDDNQKLTFTSDIKHYIRTTDDTPIFVKSYRYPYALKKEVKDQIDS
MLKQNIIKNSYSPWSAPVWVVPKKSNSLETQKWRLVLDYRKLNEKTISDRYPIPNINEILDQLGKSNYFSTLDLASGFHQ
IEMNQADRSKTGFTVEGGHFEFIRMPFGLKNAPATFQRVMDHVLGDLVGSICLVYLDDIIIFSPSLQKHLIDIRQVFDRL
RSANLKLQIAKSDFLRREVNFLGHIVTQDGVKPNPNKIKSIQEFPIPKNRRQIKSFLGLLGYYRKFIKDFARITKPLTQQ
LKGTKAVTIDEEYCKTFEFCKTLLCNNPILTYPNFKEPFILTTDASNYAIGAVLSQKLSGSDKPISYASRTLSDEETRYS
ATEKEMLAVHWAVKHFRPYLFGKKFILVSDHKPLTWNTGPFSTNDKVARWKLQLLEYEYEFQYKKGSQNVVADALSRIRP
EANIIVNNIDVENFSNNKVTSSLYNLASSIIIVEKPLNDFNLQIVLAEGSPASYQVSTPFKNKLRRTITEPRLNSDTVLD
ILKKILKINRTLAMYTSDSIFQIVLDVFSKHFSYNKLFKLLRCTTLLDDITNTTDQEKIVNDYHNNNNHRGIDETLMHLK
RKVYFPHMKSKIAQIIKGCEICLTLKYDRQPQKPPFEVPETPCKPMDIVHIDIYTINKNYNLTLIDKFSKFACAYPIPNR
TCINVVTAMKHFFSLFGIPKKIVYDQGAEFSGSIFKDFCNQYDIQCHITSFQQSSSNYPVERLHSTLTETYRIITELKKK
NKQINKHEETLSETLLTYNNAIHSSTKYTPFELFTGRTPIFEQTIKYDTNHEYLQKLNFFQSKLYQEVKEILHKNTKSKL
DKLNETRKSAAPLSTNESIFRKENRRNKLTPRFSKHKVLRDNGNTFITTRLQKIHKSKIRRTTK
>Gypsy-20_BG_gag#LTR/Gypsy 60-1253 [Blumeria graminis]
MSSDDNFNLEGILREISAIEIDASSANTESHRPALEPEPQTPESKIATTKHETRNIKATMTNQTDAVQHKFTTWDGTPDQ
YSLCSVMWRVAAEDPAIIKGFGGERGVCLALMQMLPAEHRSRVGPFFEKQVKAKEFYSSSLLDEFDRHFVDRDREARNRR
LLYSVRQGNAQPFAKFLHTFEGYLSNSGELAPIGVSRIHTLSEAIAPYLRRAAANQTDLEKLNYEKYVEQLSTLATNWES
LPEFQAKSVDDTGETYTENAIGDLPLNIQEQLRKQIVNQTETQLQSQSPKPSVNSPIRDREGDIKMSGTDIISIVSTVIS
AINNGNNSKGFGQARPLDKRPNAPHCSEEERHQRLKSGRCIRCNVFPSHRFRECKFKGFRSEMSNLRIASASISESEN
>Gypsy-19_DWil#LTR/Gypsy 177-4249 via tfasty with BLASTOPIA, 3 frameshifts. [Drosophila willistoni]
MTPRTPSQKSNSQKTPKRARNAVAVAPISADKASSVPPKIRHQKPKEERERQTEAVLETVIGTVSKDITEAAIETALDLI
NKIETVETEQAMANAVEMQSQLQQMMQLLTLKIQVDEQRESQVHMASNCLENIVGEFNGTGPRKWFEVFEYNADAFELNE
KQMYAQARGKMKGAAKLFLESVSVNNYANLKSCLIEEFECELNSAEVHQLLRERKKHKQESIQEYILTMRKIASDGNVEE
SAVLRYIVDNLFLKNEFKVGLYACKTFKELKEAYEIVIVKSYCFKCGSAEHKIKDCLGETKCFKCNENGHFARSCPLNGG
NDKKDARGDFKVRNIVNRRRVKKMSVNGVLLDLLVDTGSDVSIFSESTAKQLPNIEVHRNESTLTGLGKKETKPTGAFVA
DVVVDDLHTTQKFIIVPDEAVECNALIGFDFVEKFIVTYAEGEYTFSKGDAVGDSNKERIAGSYNVFEVASLYEAPTIYQ
KAVRELIESIDEQPKQTQAECPVKLQIIPDATTMKSFHQSPSRLSACEAEAVKNQVDEWLTQGIVRKSTSSVASRVVVVQ
KKDGTPRICIDYRKLNSMTLSDRFPVPLIEEVLEKLQAAAFFSALDLENGFFHVPVEESSKYLTAFVTKEGLFEFNKTPF
GFKNSPAAFIRFVNYVFQNLINDNIMQLYIDDIIVYAHSADDCLEKTQKVLQLAAQYKLKIKWEKCSFLQSRINFLGHIV
CGGKIWPGKEKTDAVNRFGTPKNVRAVQSFLGLTGFFRIFIKDYSQIARPLTNLLRKDVKFHIGAAELQSLPKLKELLTS
KPLLHLYSRDASTELHTDASKHGFGAMLLQSFNDKLYPVYFWSRTTESEAQRHSYILEAKAMYLALRKFRHYLIGIHFKL
VTDCSAFKQTTRKEDVPREVTSYVLYLQDFTCDIIHKPGKSMQHVDHLSRYPQSIYNISTEVSARIKKAQSIDNHIKAVV
TILNQQSYENYKIKGGVLYKAIDGNDLIVVPKQMENEIIREAHEIGHFATRKTMHAICQQYWIPHLERKVSNFIDNCIRC
IIHSKKLGKQEGQMHLIDKGDTPLHTLHIDHLGPMDATSKSYKYILAMVDGFAKFVWLFTTKSTGHDEVIKKLTDWSHIF
GFPKRIISDRGSAFLSNAFAEFVAENGVEHILTTTGVARGNGQIERMNRSILAVISKLSAEDSSKWYKYVPQVQKALNSQ
VHASTKFSPFKLMFGTKMCAQAGDRVLCLINEEFINNFNAERESLRDEAKKSILEAQMTYKRNFDKGRKQDHGYLMGDLV
AIKRTQFVAGRKLASCFLGPYEVTKIKRNGRYDVRKAAQVEGPNQTSTSSDNMKLWRYVVDNDDPESSGTDDDDQEGR
>Gypsy-20_SMo#LTR/Gypsy 1438-10170 [Selaginella moellendorffii]
MNKPRKAASKQQEDTERLQRYLQRELKRLEKERKEKATQWSHFVQVSERERYITDELFPKIAAGEDAGRILEGYQNFRTP
PASPTAAPENPPETQPEVQHTPQHSFHNPLFRGQTDPRTYFSWTVPTASPAVLGTLFSTPVSASTSTTPFASAPDFYNFQ
QQPDSPKLNSVEYGLRPIYIVDPDDRPAHHQQYEFGQSSEYTLDQLFDQAFSRPHQQPEPDIDLQQPDLQVILRQSSPET
LLQPAEEPLLPSTSTLPPQNTPPTAPSNVPPNAPPNTLPHSLPDIPPDIVTMTMVLPNTVIGKLVTYPQFKGKKTEDPEK
HVIRFKEAARVNGQQDNLAFLFGCTLKGRAGEWLQTTDPKLTFDELTKAFTDHFKSALSQSEKLQKIQNIKMRTGETLEE
YTERFTKHANRCKSSSTDILLYQWYMQGLASHLKKAATKIDTSDYKTLSKDLKEVQIRRQTARVDEPEDFDSEEDEDDLL
DSLTGKSKDKVGIRKIQKLLTKFTASGDKSDVRTGVWCTKCKNEGHSATDCKLQLVKCQICGKDNHDAKTCRFRSQPEVR
QISNFPRRPPRQPEYSTQYPAAPPNNWRPPRNNYLPRQWNAPPRFNNNYNNRPYFNDRYQQPDNRPYQQYRQNQMDYNNS
QAYPRYQNQGYQGYNRYQGYQDQRYQGNYNSRPWQPRIPDQPGPPRLGPPPPRQPDQQQQQPPATRLIEADELPFPEEDP
EPQVLAVQTRAQLRAQHQQRPDKDSNTEDDTGSERPKQTPEWKKRRQLAAKVQKHLTQQPPELVILDSEDEEQPESSTQQ
PRNQPTASPAQLLANSIGDTTVAESILTQNIQITVGQLLKIAPYLVNQLVSLTNPPDTPPTDAPALNTSKDTVDAFQAEI
QPGDCDNEVPTIDLRIGRHQVRGAMLDGGSGVNIIEESLVRQINLGPVEPAPFNVRMADHRSVRPRGIIRNVITNIRGIR
VPVNYVILKLPKDSDGYAVLLGRPWLKHARAMHNWSTNQIFLQGPQGPVTVSTNSSKHLPTNIRPVDLEDYDLETGLDDY
EEQQILRAYPDLEPLAEIDIFRVAADFSRERPQLTEALKNPTTRDTTIATQPAFIVDSDQKVAYVPTIPTNQPLEKINLA
TDQNQHHIILAKDISESFRNKGLRLLQXKKHLFAWSYKDLKGVSPDLCLHTIALLPDARPKRQAPYRMNPNLMEQVKKEL
DKLLEVEYIYPIQNPIWLSPLVVVPKKNGKLRICVNYKQLNDVTNKDIFPIPFTDEVLDAVAGHEMYSFLDGFSGYNQIT
IAPEDQHKTAFISPWGAYAYRRMPFGLCNAPFTFQRLVTNTFRDYLTDFMRVFMDDFSVFSSEDRHLECLEKCLEKCEEN
NIALNPEKCAFFVKSGVLLGHIVCKDGILIDKDKVEVILQLDPPKNQKDLRRFLGKIGYHRRFIHKYADIAKPLTDGLRL
DAQWIWSDTQQTAFDNLKLKLTTAPILAKPDWTKEFHIHVDTSDIGTGTVLSQAQRDNRDQPIYYASRLLTSTERNYTTT
EKEALGMVYALQKFRHYILSSKVIIFVDHKALLYLINKPILSGRISRWFLLLQEYNFEIVHKPGRQHEQADFLSRITTGE
SPDRLADDLPDSNLFRISVPATWLDDIFAYLSSAKVPAQHTTPDQRKTFVSKTRRYSIIGGSLYKLGIDNILRRCIKVPE
TLRIINEAHSGPSGGHFASDTTVRKILQSGLWWPTMWRDTEDFCRKCDTCQRNRLPPKTQSQPLNPTFPVAPFQRWGLDF
VGPQITTARKNQYIIVATDYATKWAEAAPLKQATAKATAKFIYENIITRFGTPLELVTDRGSHFINETIGHLTEEFQIRH
KTSTPYYPQGNGQAEATNKTLKTILKKVISDSGKDWDEKLGDVLWAYRTAYKITTDMTPFKLAFGIEAITPIEFIIPSMR
VAVKYDLDPRHIFRQRLLELEKLDELRLNALWTLHTIQKQRKARHDRRLARNKTPKYSPGDHVLWYRGPITQLGNKLKTK
WQGPFIITELYPNSTANVATLAGDFTETVNLNKLRPYYVDLCNIQTTFQQHFRPQLVTGTERFPEHSPGHSNRTLDTSRP
YREATPDDTTMSIIDNQQASWHQQWPTRYSETITGNFSWTTLQSPLNSAQNAESQATVRSTPRDQICTVQQRSISAARSS
SPQQITALRSCHAIATVQTKPHQVSRDTNLSRQQQLASTLSSAPPAPATMPKRKMRAIPPRRLRYVRHSLPKLPTEAVTA
WLVEQGFGQLLEIFKTPFDHHLARKLAKKYDESRNTISDDVNTIAITPALLSKVFKIPRKGLDKFPKEVPKVILKPGASP
TTEGPKWEDVLSEHQEKLRALLLLYDLRPTDKSISKLTTQAYHAMDRGERVNVASHLNTMLAKQLKKINEKPTRGQTIST
VIFPMLIALHAAHPDKQPWSTSSSTEHSHADDDDSASTETLPSPPHKKKAQPSSSKHXPPPSPTPSKTSSEDTSSDEESP
PPRRHKLRQTPQRKNCHRSTEYVVLTNRDTTNTTEPRQHQHQSIPSRPRARSPSPTPIFNNSEAFTGDQHHDNNDSHHPD
NITASNSKISSGHVNSGNVKPLHPSAAHPTLNTTADAPLNFSKNPSSSSNITAPHLDRPSSTTIIKFAPTQHCQILTNST
DQRSPSASAQHQPPQQQSTPQITPADPIKNPAPDSVSAPYGSPSAPSPPVQASQPHQQSTMPPLQSQVRKDRASFDHEIR
QEHEDKMQDPGYLHRKLFEALERRASHDISQAIRGRVPQAQDIAQHLSRDGAFINTRNAVRAEFYEPLVAEIGNLHNTIH
HLQGDIQSIKTTAASSSRANNNPTGQQNYWRDKYHHGVTVIQEHQQRIDHLEALLAEYEDDDGSDPPDSEPNDNLTLPQQ
RRRLRRLQRAPEANQLHHQAMDTDHGPEDGA
>Gypsy-21_DR_gag#LTR/Gypsy 86-1774 [Danio rerio]
MEIIEQENIKVPNSLIVSGTTDTESDIDLTEHLGKYGCINRIVRIDSPGSPHHKNVIVEYESGSAVKILEPQLPFIFENP
HQADIQYEIKALSSIYVETVTTSATKGYMEKLKSIAKLSGRRFEDLLQEELSKCREPVAQADDDTTDVASDLRSGIPQVN
PAQGSQEMPMGAAFVPLVGTNVPNVNPPEIQRVVVEHIVKSEEATSHMHAPLKLRFFSGRSPRPANEVDYEIWHNSVELM
LQDPAVSDLVRSRKIIDSLLPPASDIVRTLGLHATPRAYLDLLDSAFGTVEDGDELFAKFLSTMQNAGEKPSQFLQRLQV
ALAQAIRRGGVPSSEADRHLVRQFCRGCWDDALISELQLEQKKANPPSFSELLLLLRTAEDKISTKELRMRKHLGASKLR
TSSYSVCASSDEVVSTQTIVSDLKKQIAELQNQVEGLTKAKKQAQCAPEGRVCDLQKQVVGLKGQIVEAKPSKSAKTQSA
TRMNKTQSVQTNLSEVVSSVPLKQLSKPKPWYCFHCGEDSHIASTCDRDANPALVAAKRKLLKERQSSWEAQMGSSHRTP
LK
>Gypsy-21_DEl_gag#LTR/Gypsy 881-2377  [Drosophila elegans]
MMGIDRSPERVAERGANIVCPICKAEVYLVEVCLTSCQHEFHKRCIEAHWKKSALCPVCKASCRPTLPKSGDSRQTRSQS
KNRQPADNADKQVSDDIASSSGYNSNTINSGDTIPSAITTNAITLLAMERRLLATLTESMASSIQKSVSEAMSRIMSDQG
ANRTPSELSQPFNSQQFGSGFNRIDTREDTGVNSRQEILAPCSPASLRSADADLLNRPDKVVHILNGWKIKFSGVGVSVD
NFIYRVEALTKETLGNNFTVLCRNASVLFEGKANEFYWRYHKAYGEVRWDSFCSALRLQFRPSRDDGDLEELIRNTKQKS
NETFDSFYDTISSLIDQLEQPWMPHKLIRVLRNNLRPEIRHEILNIDIQSVSELREICRRREAFLSDVRRCQGYFKSSPF
KREVSEFSPEQEMPPESESDKEGDIEAFSLLCWNCRKEGHRYQDCVAERRVFCYGCGAVNTYKTSCNKCSKNSRAGGSMP
PYKQKASSGVRSQATMTDQ
>SZ-50_gag#LTR/Gypsy 47-3118 (1 stopcodon) (matches others gags only from bp 1196 on) [Oryza sativa]
MPPKKVVKEKVTRRKESDAGADMAAEEGAEPSASIAEVGGAPSASAPAPSASALITALLPSAPATSEQAPRVDEVAKAAA
AARALQTRAEILSAGQLLVPPAAPSQPTVAQAALPAVQVQVNSDPETQAEADMETIRQNMARLQDMLRQMQEQQQAYEAA
RRSRVPSAPILQYSAGYVPPQVCPQVQSQPVPPQVSQASVHFAGQPAAAAVHQAPYGQAQQIAAQVxPQPLGQVSQTVAE
GASALQAQFQAFLQQLNQPHNISSTAPSTRPEGSTGQGAPSWLPPNQPNLGASPWSQTPQYDFVNAAQAQTVRPQGPTPG
FGTSQAPAQVAMTWSQPVFDPSMATQQVLPIATGQPSTMAQTHAQAVISPFATPYPQQGAANRAGGEKGLPLSGGIKNRP
IPPQFKFPPVPRYSGETDPKEFLSIYESAIEAAHGDENTKAKVIHLALDGIARSWYFNLPANSIYSWEQLRDVFVLNFRG
TYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQDITEALVINAASAGLLEGELTRKIANKEPQTLEHLLRIIDGFA
RGEEDSKRRQAIQAEYDKASIAAAQAQAQVQVAEPPPLAVRQPQTAIQGQPPRQGQAPITWKKFRTDRAGKAVMAVEEVQ
ALRKEFDAQQASNHQPVRKKVRKDLYCAFHGRSSHTTEQCRNIRQRGNTQDTRPQQGATVEAPREAAQEQPPVEQRQDAQ
RRVIQVITRADPLGHLSKRQKKMQIRAVHSITSTGEGAPQYMNQPISFGPEDAEGVMFPHQDPLVISAEIAGFEVRRILF
DGGSSADVIFAEAYAKMGLPTQALTPAPTSLRGFGGEAVQVLGQALLLIAFGSGENRREEQVLFDVVDIPYNYNAILGRA
TLNKFEAISHHNYLKLKMPGPAGVIVVKGLQPSPASKGDQAVVNRAMHNVEAELHSRPKHAPKPTPHGKIVKVQVDDADP
TKLVSLGDGMGKQEAESILAVLKKNIDIFAWGPDEVGGGGFGRPHHVSPSSQAGCQAKRAETA
>Saci-3_pol#LTR/Gypsy 900-4400 [Schistosoma mansoni]
MYPYSSQFPRPRKCASPLRPPTQVTISKSRNDSPQAGIFQATPEGGFGSESRLVLVSPCFRSRCPSLSSSLLIQGGKLLS
RRVNAAVLAGTSPQVGRLFYVHDYRTNARYLVDTGAQVSVVPIGNSKSQATMLRLRAANGSVIPTYGTRQLTVNLSNRRQ
YLWTFIIADVPTAILGIDFLQHYELLVDSRRLQLIDTSSNSNFMGSKAHTNAYRITGVFHSRDDLFHVLFQKFPKLTKPL
EETPSVTNRVVHHIVTRGPPVTARPRRLAPDKLAFAKREFDNLLATGIIRPSHSPWASPLHMVRKKDGVSWRPCGDYRAL
NTATRFDSYPIPHIHDITASLKGTTIFSKIDLVRAYHQIPVALEDIEKTAITTPFGLFEFLRMPFGLRNAAQTFQRFIDS
IVRDLDFVHVYIDDLLIASSNVDEHYQHMTLLFQRLSDNGIIVNPDKCELGKKEMKFLGHVIKHEGILPCEDKVRTIMEY
TVPSTLKELKAFLGLVNFYRRFISHAAEQLRPLTDLLRGNPRKLEWNDAARTAFSDIKTALAQATLLVHPDPSATLSIAV
DASDFAIGAVMQQNISGSWQPLEFFSRRLTPTETRYSAFGRELLAAYCAIKHFRHAVEGRKFILFTDHKPLTYALHTKSD
RYSPRECRHLDYISQFTTDLRHVKGESNCVADALSRIQLNAVTLPVLDLPAMAAAQANDTSCTEAQQSTSLQCREVPLAT
SSGTILCDTSTGLPRPIVPSAYRRLVFDALHGLSHPGIAATLRLIAARYVWPSMNKDVRMWVKQCLQCQRSKVHRHVAAP
IGTFATPDARFDHVHIDIVGPLPPSHGYDHILTCIDRFTRWPEAIPITSITAETVAHRFVERWIAMYGCPSTVTTDRGQQ
FESALFSSLTRLLGTERIRTTAYHPASNGLVERFHRQLKSALRAHENNNWYETLPLVLLGIRTSLKADIQCSAAELVYGT
TLRLPGEFFTPRSSTKFGESDYVQRLSAFMRTLTPVSTRIQHRQVALPRELSTCSHVFIRVDSVRKPLQQPYEGPFHVIS
RHEKTFKVDRRGRIETVSIDRLKPAHVDDSAIPDKPRPNVRPIRASSGISTSTSDPTLDAPKTSFSRPSQQHVSSAPSTD
ETSVSRPDLQTTPPLTADEIAGSRCSNETTVSRSGRRVRLPVRFLD
>SZ-50_p3#LTR/Gypsy #ReverseORF 9302-10192 R) [Oryza sativa]
MAPRKPNPVQAVGPDPGRVDDDNTTFLGASLVDDDELAKLVSSGALIAGQAFAPGKAVVPKPVDNRTVVFAVFFEAGLRF
PCNVLLPEILRLFQVELPQLSPSTLVRISIFDWACRTSGFEPSAALFGAIFFATVNSKTVITPAGTKKTVIGSVNFNVRP
ERSDLWPANAAMSKWDRHWMARWFYHTIPFEAGSDSAKALRCRRRVIAPNRKPRIAVDGAMEARFALLRKVCSRLSCRDL
VEEFCMLRIFPLSQSWQVAVNLSEEVDGLPKLVLPEGMNSKSAVFAIYFRALALSA
>TCN3_gagpol#LTR/Gypsy 44-4702 [Cryptococcus neoformans var. neoformans]
MPKSAQDSPTELLARLVDRVQQQDDTLALLTELLAKQNKLSATKERYTPRGIPLPKASDIPRFEGPLGDADRALTHLRRL
QQVLRTHGLLTPSDDEEVEERRRVTVIELANNSIECAGLVGWVEQDGRRMEADGITTWETWSAAFKAKAMPSNWEFRESR
ALFRLSFHEVSSEGWKKFDNAVILHRAHLLGSKLYPTDQQLTSFYRAACPERLFLRLVDLPEFHVDDLDALRALISNHVE
RIQHEDAASRIRSRPTNQVSSDNVQLPHSMSYYHDPSHALPYYLSPAGRHIREVFRKENRCYDCRKTGHQHSKCPTRTRA
PTPKVNQLETELTAGDATSAYLTLAQTVPPADDDTCDATYALFHPLLSISVPVSADSRLSAPSPKFLLDTGASTTFVDPR
LAARLGWEVKKGLVRMRVRLAGGLAGPLVTDMVVGSFSLGGRMYRVDGVLMDLHGTYDGILGLNFFARHGLLAESNSFVR
LLEAGGVNLSALGLQKLGAPVSHAAANPASTTATVSFADTRPNLSQTRAAAESDSLTDVLRKLQTEFHDVFCDDLGDVRN
FPTISKTKSGVRFEINLKHGATPHRSPPYRVPEALLPRFREMLLEHLNAGRLRYSSSPWASPAFLVSKGNGKFRMVCDFR
ALNNVTVPDMYPMGNVQDILHRAARKGKIFAKLDCKDAFFQTLMKEEDIPKTAITTPLGLLEWVVMPQGIRNAPAAQQRR
INEALQGLTGECCEAYVDDIIIWGKDAKDLHDNIVSVLSALRRSGLRCSREKSKLFLDEVAFLGHIIRPGQILPDPAKIA
RVEQFPLPVNSHQLHSFLGLVNYLRDFVPNLADHTAVLHATLPPNAAAEKAYYKAVKMHKGHLPEGWTGWRWSFGPAEKA
AFEATRRAVSTVPCLAVIDYDAVKAGKQQVFLFTDASNTGTGAWIGVGTSRESAQPVAYDSRTFNSAQRNYPVHDRELLA
IINALDHWRPLLYGIPVHVYCDHFTLQWFLGQRNLSPRQLRWLSTLKDFDLRIEYIKGEFNTLADYLSRHAPSDAAEPAD
PSLDQSPVSVHATMTYEPTLDPDTLRAIAQGYQGDVLFKEWLADPSTAPGVTFHDHDTHRLLLVDNRLCIPDVNTLREEL
MRQAHEGTAGHLGVEKTMEVLRSGYFWETMSKDVREFVRACHLCQQANAPTTKPAGPLHPLPVPRDKFDDIAIDFVGPLP
SSGGHDYLLTITDRLTGFIELVPCSTTINARDLAILVWDRWVSRYGLPLSITSDRDTLFTSRFWTTLWEQQNVKLKMSTA
FHPQTDGASERTNKTVVQLLRSWVDRHGKSWVKYLPRVSQAMNNTVRRSTGFSPAQLVFGRRLRTLPSLPRPPSFIQASL
PTRAEWTLAADRTDLSLADARDNLLLAKHRMAVQANRHRRPEVVYKVGDWVWLDTRNRLKEFRAGDGEYRAAKFFPRFQG
PYQVQEANPALSVYRLHMNDRTYPKFHGHLLKPYLSSPRFHQTSPVTHQXDTGRRSILQILDDRVYRGHRQLRVVLSGDG
PNGQWRNLDDLRTHDGFRALYDEYIGDDELAL
>TCN1_gag#LTR/Gypsy 164-1465 [Cryptococcus neoformans var. neoformans]
MSGPSTRSGRAVEKVEKGKEVEHTLDDDHNPAGSFNTNPQSDPFTADNTSNDTQTQLEMMRNHIARLEQQKEELTHKLEE
SKVERQMFDNSEDNEGENEQELDEEDEEPRSSRDLSAQTPYPEVKREYSRQRTSVPSSRPQEPKVSQPEYYHGQYTKLST
FITQVTMVITLQPSRFPTETSKVLYAGSFLRDTPFLWFQPFVTIDPQPKFMLDFKKFCAELRKNFGDPDEEQTAERQLNT
VRQQGSVSSYLATFMRYATLVQWNDEAKKACFYKGLKDDIKDELARLPKAKSFKNLQDMAIRIDSRRYERVLAKRDQQPK
ALFNATRSDYTRTSYNNNHPNNFRRFSAANSMPIRSTTANTTFNKEVTPAVNLRAAFVPSSARITRRGRLTPEEYQRRKD
HNLCLYCADKNHQVAKCPVVPSQQSNTTLPSKN
>Sabrina_HV#LTR/Gypsy 966-2412 via tfasty with SABRINA3_TM, 4 frameshifts and 1 stopcodon. [Hordeum vulgare]
MNENTKLCDFSNTNNNDFISTPIAPATNAESYEINAALLNLVMKEQFSGLPSEDVASHLNTFIELCDMQKKKDVDNDVIK
LKLFPFSLRDRAKTWFSSLPKSSIDSWDKCKDAYISKYFPPAKIISLRNDIMNFKQLDHEHVAQAWERMKLMIRNCPARW
LESLDDYSIFYAGLNFASRNILDSATGGTFMEITLGEATKLLDNIMTNYSQWHTERSPTSKKVHVIEEINSLSSKMDELM
NLVASRSAPLDPNDMPLSSLIESSNASLEVNFVGRNNFGNNNAFRGNYVPRPFPSNSSNNFGNSYNNTHGNYNRLPSDLE
SNIKEEFINAQKIFNASIEEKLLKIDDLAKSMDIISCDVDALKVRCAPPKINMDETLKAMRVSMIESQERTAEIRARHEW
LKKACSRDENHEDLKVLGVNPIESLFSCVKPNDYGAIYESTLVEKCPNDSESIYLDAKSDxSGVEDFKTLSSNEITTVDF
KEF
>OSR38#LTR/Gypsy 213-4865 via tfasty with SZ-56, 5 frameshifts and 3 stopcodons. [Oryza sativa]
MAQDGKLDLLLKMMEEAEKEREEMDRKREESEALNLVELQLLKLAMESRIPLVEKQVSELGGSANDLAKRVNSLQASVEK
CQREVQQNALYKGESSQGPTQFPNDDDLNGNSPNPFLFTPQQGWRNPPQFNSVSPFTPENSGCPIFDSGMASIGGNVPSM
SCPQFDGENPQMWRDNCEIYFEVYGVHPANWVKVALLNFTGSASFWLQSVRNELVGISWLELCDRVCRKFTRDRQEILIR
LWFHVAQTGSVTEYVERFDSLMHQLLAYDNALTPRYFLTKFVDGLKDDIRGAVMLQRPVDLDGACLMALLQEEILEGSRK
PSYRKSDGTNFNKVFSRPTQPTVWPKSPAQTTGDDRKLIEFREDKVLALKSYRRAEGLCFTCGERWSKDHKCSQTVQLHV
VEELLEAFQGDMEEEVNGLDSSQKDSLMALLASACNGTDSTHSFRVKGLIQGTKLLMLIDSGSSHSFLDENIVQTMQGVT
SLPQPVKVKVASGEVLICDKQLPDYAWWLQGRCYRTNFKLLSLPGYDAILGIDWLQGLGVMRIIWVQKWLEYEINGSPVR
IQGVMPKVDACPLISGDKLMGLCKMGALMHLFQITSETDIHKPEIPIMIQEVMNEFNSVFEEPQGLPPRRRCDHSIPLIP
GSKPVNLRPYGYNPAQKDEIEQQVRDMLKSGVIHPSVSPYSSLALLVNKKDGTWRLCVDHRLLNAITIKSKYPLPVIDEL
LDELAGTGWFSKLDLRAGYHQIRLVAGEEPKTAFQTHFGHFEYRVMSFGLTGALATFQGAMNETLASVLRKCALVFFDDI
LIYSPTLEAHAQDLRTVLQLLQDHQWKVKLSKCSFALKELNYLGHTIGVAGVSTDPSKVQDIVNWAIPTTLKKLRGFLGI
AGYYHKFVKNFGVISKPLTNLLRKGVEFVWTPEVHESFEQFKKALASAPVLALPDFTKPSVIETDASEIGIGAVLSQDKH
PIAYMSKALGPRTRGLSTYEKECLAILLAIEHWRSYLQYAEFTILTDHKSLMNLTDQRLHTPWQQKAYTKLLGLQFKICY
KKGIHNEAADARSRCDHNSSLEVVAISVCKPTWLEEVVNGYLKDAKATxLLSELAIHSKADSPYQLKDGLIRYRGRIWLG
QNIELQxKIFSALHDSSIGGHSGFPVTYRRIKALFAWPGMKKQIKLKVKECSICQQAKPDRSKYPGLLQPLPVPLGAWQI
VTMDFIEGLPTSRRFNCIMVVVDKLSRYAHFLRLAHPLSAADVAQLYMEGVFRLHGLPLAIVSDRDRIFTSHFWKQLFNS
VGTKLHMSTAYHPQTDGQTERVNQCLETYLRCFTHSCPTKWSTWLYLAEYWYNTSYHSTLNKTPFEVLYGHIPNQLGITV
NSCELPNVQQLLNExGLMIQLLQQHLNRAQQFMKSQADKKRSFRAFAVGDWVYLKLQPYVQTSVAARANHKLSFKFFGPY
EIQEKIGVVAYRLVLPASSSIHPVFHVSQLKAAQGFKGDASVHLPVQSSTKQVPVAILDTRVRKSGMSVIPQVLIHWSDD
VIANATWEDLEDLRTRFPRALAWGQSSFQGGN
>Ogre-SD1_gag#LTR/Gypsy 3746-7234 via tfasty with Gypsy3_MT_gag, 2 frameshifts and 11 stopcodon. [Solanum demissum]
MTRKEGTESGNDDVQIVAQESVSVEEVKMLRQQMAEMYEAxMNGQAPPSSIREYLNVNMPFPIQVSTNDLIYPPGFGPYT
NTSNVAETSTVRPLNTPMMSNPLFVPTAPTNSTSNPTVVPKSNNDPSFQVLHDHGYTPEEALKIPSSYPQTHQYSSPFKI
EKTVKNEEHEEMTKKMKSLEHSIRDMQGLGGHKGISFSDLCMFPHVHLPTGFKTPNFEKYDGHGDPIAHLKRYYNQLRGA
EGKEELLMAYFGESLVGIASKWFIDQDIANWHTWDDLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWREQA
ARVKPPMKELEMIDVFLQAQEPDYFHYLLSAVGKTFTEVIKVGEMVENGIKSGKIVSQAALKATTQALPNGSGNIGGKKR
REDVATVVSAPRTYAQDNHTQHYFPPQIPQYLVPYPxYPIFSAHPIVPPSYPxWRAPLPQNHPSALQNHQNTTRIPFRPR
KEYKKGNGAKDEFTPIGESYASLFQKLRTLNVLSPIERRMSNPPPRNLDYSQHCAYCSDAPGHNIERCWYLKKEIQDLID
TRRIIVESPNGPNINQNPLPRHTETNILDDExPRRSCSPIQANPxGxNWHxKFSKCRxLNKNDAFRGGKYVxKVDPIKRT
HSNCKGSTxRCLGKSERGKIGCSKRARLAYLDRARSLYSTCDHxASVPLPMTNPKAVPWKYEPTVVTYKGKEINEKVDEI
EGMTRSRRCYAPAELRKNNNDQMQVKSPVTEREAEEFLRKMKLSDYSIVEQLRKTPAQISLLSLLIHSDEHRKVVMKILN
EAHVPNEGTMSQLEKIAGRIFEVNCITFSDDELPVEGTGHNQGLHISVKCELSYVTRVLIDGGSGANILSMSTLQKLNVN
VERVRPNKVCVRAFDGSKTDAIGEIELILKIGPVDFTVNFQVLNINASYNLLLGRPWVHRAGAVPSTLHQMVKFEYDRQE
VIVHCERDLSVYKDSSLPFIKANNENEALVYQAFEVVVVEHNLEGNLISKPQLPMASVMMVNEMLKHGFKLGKGLGIFLQ
GRAYPVSPRKSLGTFGLGYKPRVEDKMKAKKQRRDVWSLTKPIPPIYKSFNKARTIESSKSLLPEPVLEVHEELINYFQD
LFVEADMIELEEGTSDRDVQFIGPDVQLNNWEATPLPIKNESW
>RETROSAT6_p1#LTR/Gypsy 885-1535 (not related to anything yet) [Oryza sativa]
MAELCIQGLWTHEPPLYFQACGWDAPSAMQEAALQAIVYYRHYRPGLDGFFHFFPARANQSSANYYPGLEGNMREIDTPG
LFLAGLVRAMDRYLAKTITELRRLQARVVMLDRRIEPLGHQGHFDNAIIYGNHELQPLTETLPPPMGIYHNINTRARMRV
GFHRNRRTMPDPALAGDPVLLGPFYEFERNGRQYRLTMATPSTTVPQPPIGFSEVP
>Ronin1_gagpol#LTR/Gypsy 18-4402 via tfasty with Gypsy1_GA#LTR/Gypsy (merged gag and pol at AQTHQxLRGIL) [Takifugu]
MNPAHNPSPLDRLERIEGIIQXHEEAVAAAAAETRRAAEANERALAELSGLLSRLSARLEPAAPPASSVPASAPVILQQG
PEPRVGEPERYEGNPESCDAFVVNCSLLFSLQPRTFATEAAKVAYTITHLTGRAWLWGTAEWERQSEACSTFSXFAAELR
KVFGQGNSRSSAGRRLLALRQGERSVSDYXIDFRTLASRSQWSPAALVDTFLHGLAAHIKDAMVAYDVPSSLDGAIDLAT
RVDLRVQARRRERAPRRHFAEAGELSTGVPPQPAASSREEEPMQLGRTSLTGEERRRRRQFNLCLYCGGQGHFVATCPVK
AQTHQxLRGILVSPISASPRRPRLSLQVRFLLPGGPQDLAALVDSGADACLIGGEVARQLGLGHEPLASAIPAQALDGHH
LGNIRHRTGPVTMLLQGNHREEIRFHILEGAHFPLVLGYPWLRRHNPQLDWETGEILGWGADCHRSCLVPAPALRGTSAP
DVTPPDLAGVPEQYHDLAEVFSKARATSLPPHRPYDCAIDLLPGTAPPKGRLYSLSEPERKAMEEYISSSLSAGLIRPSS
SPAGAGFFFVEKKDKSLXPCIDYRGLNEITVKNRYPLPLVASAFELLQGXTVFTKLDLRNAYHLVRIREGDEWKTAFNTP
AGHYEYXVMPFGLTNAPAVFQALVNDXLRDMLDRFVFVYLDDILIFXKGLKXHVQHVRAVLQRLLDNRLFVKAEKCQFHA
PSVSFLXFIIAPGSIQMDPGKVSAVVDWPRPESRKQLQRFLGFANFYRRFIRNYSSXAXPLTXLTSTKTGFAWTPEADAA
FRELKRRFATAPILQLPDPSRQFVVEVDASDTGVGAVLSQRAQEDQKLHPCAFFSRRLTPAERNYDVGNRELLAVKLALE
EWRHWLEGATLPFIVWTDHRNLEYIRTAKRLNSRQARWSLFFTRFDFTLSYRPGSRNGKADALSRQFAGKEDEGPGRTPE
NILPSPCIVAAVTWGIEERVRRAAANQPGPSTCPNNRLFVPDSLRXEVLEWAHASRLACHPGARRTAGLLKQRFWWPSLG
EDVQEFVNACPVCNQQKQPRRXPAGLLQPLPVPRRPWTHIALDFVTGLPQSAGNTVILTIIDRFSKMAHFVPLPKLPSAK
ETAQLVIQHVFRLHGLPESVVSDRGPQFASVFWKEFCGHLGATASLSSGFHPQTNGQTERXNQDLETALRCMATRDPATW
STFLGWVEYAHNSLISSATGMSPFQCVXGYQPPLFPAQAGEASCPSAAAYARRCRRTWAQARANLLRAGARYEAAANRHR
TPAPRYRVGQRVWLSTRDLXLRGDSRKMAPRFVGPFPIVRVISPAAVRLRLPRSMRVHPTFHVSRIKPAHESPLVPDRPA
PPPPXLVDGGPAYXVSRLLRSRPRGRGLQYLVDWEGYGPEERSWVPAXHILDKELIRDFHXRHPDQPSRPRRVGRARPRR
PEPXVEAENEDRGLESSGSQEF
>RIRE2_pol#LTR/Gypsy 3002-6163 [Oryza sativa]
ESALITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWL
ANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAY
CYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGK
LLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDF
KKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTR
KLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTPAEKMEHWT
MHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSTSHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC
LDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREAAPSDVFVEHLYTPTVPHKDTTQVADTHDIAMVE
ADWREPLIRFLTSQELPRDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIV
GKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSK
WIEAKPVVTITADNARDFFINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQG
IKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHRL
EEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVD
NSWNIEHLRRFYA
>Tor2-2_gag#LTR/Gypsy gi|49035815|gb|AAT48678.1| gag protein [Oikopleura dioica]
MDLAEYSMSSGTEDTDLQTRIKARFGLLRECITKLQSPGSGNNLPVIDRARTLEIQNCLAHEAVHDFTTGDDAELFISAI
RNAHADQVLTLPKAQQSAGDEILCRAAKKCLSTDVKSAIQRLNIETVSTSQLIAVIEENFASKLSIFQELRKPHDVQYDS
AKGLGPYFNELQEASRHSFRQVERLFRKEAAKDAGKEAGATVKPEPVPEVQEVNSPPTQPPVLPAPTEIVKASELNDLYA
ATLGYLTVCRVYPKIAIQMTGDIDECRTAQHVFQRAKSLLDRLPKSITSEESAALAGRTYDKKQAPKSDSANMEKSIKSL
ADQISKLVNVVAPNKDSAKDSSKDSSKDSKDNNGKRGRWGNKGNKGKSNYSKAGAAATTANDHSQSQNAADALFRTED
>Tngr1_gag#LTR/Gypsy-Cigr   from_retrobase [Tetraodon nigroviridis]
MEGELQELRDLVAHLRADNERLRQEQAAAAPGPSSVPFSMGVPPIASSMSTSHSVERLVFVPRDRKCPMFRGRLGIGLSE
WIEEAQACMRARHLSVRDQAFFLFDHLEGEAREEIKYRPLAERENPDRILAVLQELYGCSDSYVALQEAFFSRRQQEGET
LQEFSLALMGLMEAAKQQAPTIMQNAEVLLRDQFVENVLEGALRRELKQLVRRQPSVTLLEVRTEAIRWEREGLPGGTRG
RSHSVPSVLGLQYGVRGGAPVMANTPSSSELDELREMLKAQQEQLNQLAKSISLLPGLQQRSRPAYRGPVVCRRCQQPGH
FARECEGVRIVSSAEFSAPNSRQHSQQPHQGQSTEN
>Gypsy-29_DR_pol#LTR/Gypsy-Cigr 1297-5172 [Danio rerio]
MSGDVRTLNSHPDHETFPSGVKGVGQTKRKHVLLGEGKYGPKESVVVVGRTCVSDFCHVPILVEGVPCVALVDTGSTVTV
LRPDLVPTNARLDPTTVLLRTVTGELAPMKGKGEVELTVGGKTLQHSVWVATVQDPCILGLDFLRSAGCKLDLKNGMLCF
EGGPEVVMSTGNDRDMSFTGLLEAKSSHGKPNGGEHIPHLQNHNKADNSPQGVKNSPTSLALAPPVVYPRVAPQFHDMQG
QGTSTLISPLGEETGLGDLRELWCKNCEGLDECQQKQFWDLLFKFKHCFAFREGDVGQTHLVQHEIETGDATPVRLRPRR
LPFARQDAADKALTEMAQAGIIEPSESAWAAPVVLVPKKGGQWRFCVDYRRLNEVTRKDSYPIPRVDESLDLVVGSSWFT
SLDLRSGYWQVPLAPDARPKTAFCTSRGLWQFRVLCFGLCNAPATFARLMDKVLSGIPRSECLVYLDDILVHGSSFQTSL
ESLSHVLVRVSESGLKLHPEKCKFFRKEVTFLGHKLGGQGIGTVEEKVQAVSNWPAPTTAQQLKSFLGLASYYRRFVEGF
ASIADPLFRLLKKDKSFRWTEECQDSFAALKLSLVTAPILAPPDPALPFILDTDASNVGMGAVLSQVGASGERVIAYYSK
AFSKAERRYCVTRRELVAMLFAVRHFKYYLCGLHFTVRTDHSALQWLMSFKEPEGQLARWIEELQAYNMKVVHRTGLSHA
NADALSRRPCAIAGCRYCDKKEARDRELGNVDAGENSADCKCGDTLVCAAMEVVGIEDWKRLQEQDVDLQPVIQWVQAQQ
RPPWEEVAIMSLSTKTLWAKFKGLRLRDGVLERGWKDPTTGEERWQVVVPKVLREGVIGASHGTVGSGHFGVSKTLNRVR
QCFYWGRVRRDVEDFCRRCDACTARKGPPGRSIAPLQQFPVGGPMERVGVDVMGPFPRSERGNRFVLTSMDYFTKWPEAY
ALPDQEAETVVDALVDGMFSRFGVPESIHSDQGRNFESRVFAVMCEKLGIHKTRTTPLHPQSDGLVERFNRTLAEQLAIV
TETNQQDWDRHLPFILMAYRSAVQDSTLCTPALLMLGREIRTPGEMAYGRPPDAPAVPPGPEYASRLQASLETAHSFARQ
HLLKAGIRQKRNYDLKTKGRHFTAGERVWVYSPQRKKGRCPKLDAQWVGPCIVLERIGEVVYRVQMPPRGRKVAVHRDRL
APYRGCASADTVLASPTVMPVLENEAGHGLGSSNTIDVLRETTPVPELQSSHSGGPVADRGSPRSQRVKRPPRRLQDYVC
SLEVEELCEEGA
>Tngr2_gag#LTR/Gypsy-Cigr   from_retrobase [Tetraodon nigroviridis]
MAQELQDLRVRMEQLQAENDRLRKERDTAPAGPRGLVLNSAAPERVVYLPRERRCPIFRGHHGIGIDEWIEEVRLSMRAR
HLGLGDQACFVYDHLEGEARDEIKYRPREEREDPERIFVILKELYGCPKSYVSLQQDFFSRKQLDGESLQEFSPALYCLM
EKVVASSPTHVGNSDVLLRDQFAEHVNNPDLRRELKRLVRHDPDLSLLDLRAEAIRWEREGGPNGVANSFAMPAFCATQT
TGLQSPFHSSPASVTTSQLAALTAAVQKQQEQLDQITQTLAALQRPSTSQPSRPRSVVCRRCQRPGHYARECENERVRVR
HSSFVGASQVVASTNAPQLEN
>Gypsy-17_Gav#LTR/Gypsy? 213-2096 Contains RRM (RNA recognition motif), but otherwise far from other elements/.[Crocodylidae]
MPARNRGGRRPIHCAEQREREEREHEIDRLEWELEIEMTRRVHAEDRAREGEVQIRELQEEVEXWQQRGSQAEDLARELR
DKLRESDARAAEMDKLILQEVEQVKVFQADYELLEKQRLSLEEDLKVMERQKEEXGTQVQKAESDRDKLAHRVRSLEIRL
ADSQAKGVEMNRGKERLLTEXQDRQREIQRLETXIGILREANGQMAAKIQDLERFEGQEEKVTNRVEVEQGPQTTAAADI
VRGRLEVLGNQLAEYVGAAQAEHRGQYQELEVLREALKGVESLLELARARMLPHSKPAKFPREQGSGEGKEQLVGQVPSV
ETHREDRRTTKITLRAAKEQPEEFPRAKGPEGPKEEAGPGQLGKSIREGSPTEEKLGFSRAETLLXLLQHWDQEWNQWQK
GCMNEMSQLRQRLKEWARLQVERQSIGLTQEQQTGVDLRDVRVTKKEEQVPPESEAYCXINPDEARTALCRGHSEPKVDR
AGGKSVEPSELAGAQGQEIRRRMRPAGRGSRPERRPGVYVNNIPKQVTWWMLRNIVEEKVGGVAHVKIYKGSVGRSTIQG
RIEFWKEEYAQRALRRQWEIWGRLQDLQGTRGRQENVQLARRKGPGGVRRESGRPQGRRGEREKTPRR
>Troyka-1_NV#LTR/Gypsy-Troyka 102-4994 [Nematostella vectensis]
MAATHRAPKQWSLSKTETITSFENWKQNLMYTLSLDTNFSTYLADGATWKKKTKTEPLRGYTDDDETVQQSKRLTAQQKV
NFLELMLGQIANYCPIISRNTLVKNSTSLEFIWQAIRQHFGFQVTGAHFIDFVDIHLEPDERPEDLFQRLMAFAEDSLLK
PNNLTHHGEQVTEEEELSPTLENLIVLTWLRLIHPSLPRLVKQRYGTELRSRTLASIKPEISQALSSLLEEIRTSDDAKI
LRSAVSNTYQWKPATSHNNQWKPAPNSKTTSRKPRSSKVCPLCSQANRSDTHHFLSECKFLPDSDRRYMIKARQIADIFD
DNDSELETHAQMPSTESIDPPAHTAHDAVVLRIQTRQSPYLDVFYNHHTVRMTVDSGATGNMIRLSTATRLGCNITTSSQ
SVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPFMEKNDIAVRPAKGQIILGDNTIYTYGAHHSTL
TSTTARLVTVLRAPPRNATVWPGEFLEITLPDDTPTDAEYALEPRTDAPSARRVKPSAVWPPPGIVTSIAGRIRIPNLTS
EPRSLKRNEHFCQVRQLFEPSNVTTTSPARAFPSTDTLHSANVSLDPDSLLPSDIKAKFKALHHEYDQVFDANIEGYNGH
VGPFEARVNMGPVEPPQRKGRLPQYAREKLLELQDKFDELENQGVFKRPEDVGISVEYLNPSFLVRKPNGGSRLVTAFAD
VGRYSKPQPSLMPNVDSTLRQIAQWNHLIATDLTSAFYQIPLSRDSLKYCGVATPFRGVRVYTRCAMGMPGSETALEELM
CRVLGDLLAEGVVVKLADDLYCGGNTPHELFSNWKRTLQALHECNLRLSASKTIINPKTTTILGWIWSAGTLKASPHRVA
TLAQCPTPTTVGRMRSFIGAYKVLSRVVPQCSTFLSPLDEIVAGRESRDTIEWTDNLHTAFYNAQKALSSTRVITLPRPE
DFLWIVTDGALRDPGIGATLYITRNGNLHLAGFYSAKLKGSQSSWLPCEVEALSIASATRHFSPYLIQSHHRASILTDSK
PCVQAYEKLCRGEFSASPRISTFLSAVSQYQATVRHVSGSSILPSDFASRNAPPCEDEACQICSFVKQLGDSVVRRSSIQ
DVIDGNERLPFTSRSAWLAIQSECPDLRRTHSHLKQGTRPSKKVTNIKDVKRYLGVATIAKDGLLVVKRETPLSPSRECI
IVPRRVLDGVLTALHIQLCHPSTHQLKMATKRYLFALDLEKAIVRVSQACHHCASLRTSSKARIEQSSCDSPDAIGVSFA
ADVIRRSRQFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQMRPLDGPVAIIRTDPAPGFQALKEDKLLQHHRLVL
EIGRAKNVNKNPVAEKAVQELEREILQLDPLGGPVSEVALAVATANLNARIRLRGLSAREMWTQRDQFSNSQLPFQDQTL
IEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVGDLIYLHPDRNKTRGRDRYLVVDTEGGFCNIRKFIGSQLRSTSYRVK
KTDCYKVPSEVPDKTPTAAYDCDSSADEDDTPATKRLPPPAPPDIPTAITDPPSRDVPPQSDADASETRAMDSSHCPSNL
QDDDTSPPRRSTRERHLPLRYRDDDFITDFK
>YLT1_gag#LTR/Gypsy 644-4387 [Yarrowia lipolytica]
HPLEHQSSGFPPLGGVNDKQPLFDQQYLQLRSTFEAETADESTKPGAHARLNTACERLLRDLFRKSGFDHEPAVSIAEQE
EELCFRFKDYHTAFSIETLRAYLSALSTALTSSPLPVLSRCLQLQKLAPTHLGTALGREIPRDNTRWLSLGMDSDPERDH
QVATELIQPLAKMITQHVQRLDDLNDEALLRWRQHTVSFEDVWMWVEPSAPPEPSTPEPDKVVVHVAGRGRSTRKPADGP
VSTETVQKPTIRASDASTSWAADKAPCVFCGSTAHALVNCDDSEGSPLVKAKYLGSFKSFTRLGYQGFEKYLSPVDADFP
LKQSALYTSWKQKEWSNPLMEPRLRTFNAQWRPALAGRVNAVEFVHVEDPGGPLDNSYDSDSSASGYDFQDLLQPGTFSV
CLGGVPRDLLSDTFSSYDEPRTIIDSTDSQLELTKEAIHQHILQMAKQPTPLPVTYAIDAPVSGSYSGNMKRLVAHPAFM
QLVARLTAPPGTFKASTLEAGFVGAVMAPSSPVAGRVYFVDAVQRLLNKYNVVLPTKLYECFATVRNDLMEPAYATEGDP
RRQSLKTNINALKTVVDSKHPDRPVAPLPRRSPRRDVREDMPPPALPQATKRGAASSTVSSAAPPTAKRTKAVANPSSVG
PTDSASSTGAVVDVPSSRVAVHPPRLGDNHYVSPGTRVTNHIHDASAVAENAPLKDYKDALDRLPSDLEDSKALFTRDHP
RYDNALLKAGRLPLFKLEAIHALPESEKADLFERILKASDVDGLVLFELLQVCPDLTKYIWKNFRHQRHRLAGPDIQAIA
LELGDDLMECAMDLALNVISSTPYELNSGTFGRLQEVFTTIDRQLYDDKVGRPLSPHFTDNIALFDQQTSALFDSGSSNN
VIDTDFFALVLAKAGVTPDRVIVFSDGQSHATVANGAKVKVDFWALLPVTFLGVVTLETFCVMKCSMKCILGTGYISKLR
ISFDHDRYRVASVENPGNPGVRCYPSDRPSAGLVAHLGLLDRLVRPGRRPVPAFPAAKLSRQNVMAHVRPTPSLCGDVDE
ATNLLDASSLGGPQPGSYSHRSETAAGCFAISFADDCESAGPPSSAATAILKALASSSGPDPLGIPPRDDPDESYSSSPG
HHGDVSGEPNSSSPGHTSAPVDGTLGPLLPTDASSVDDSNELCSSSSGSEAPSEAPSGVSAALSDVGTVFQESYTSYRFH
DNLADNALHARPPRRSCSQWFYFFCRPRQCFPVSTSCIALQLLPAACT
>Troyka-2_NV#LTR/Gypsy 1-3430 via tfasty with Troyka-1_NV, 5 frameshifts and 5 stopcodons. [Nematostella vectensis]
SSHRAPQQWCLNKIETANSFEKWRENLLYTLSLDSNFAPFLVHGVSWEKKIKTTLTRGFQDDEESVPAAKCLTAQQNTNF
LELMLSQITNYCPVISRNTIVKNSTTVDSVWHCIRxHYGFQVTGSHFLDFTDIYFEPNEKPEDLYQSLMAFVGDILLQKN
GISHNGELTWLRLIHPSLSKLVKQRYRTELRSRILASIKPEISQALSSLLDDEIHGTEEEKIMRTATRSFTKGLKPRSST
HPDKRCPLCRQAGRPNKHFLSSCRYLPDQDRHYMAKARQIIGIIKEDHEYPACDFPRPPLTEEEDDDAQHVQEASAARPS
KPDSNMTGNMIRLSFATKLGAHVESTSQSAHQADGSSPRGPHNLAFEGLVVENLDVDALAGTPFMETNHVAVRPTKRQIL
LGDGTFLVYGSPLYPNKSTAARRPMVLRAPPTTTVWPGEFIEVELPSDALPDSEYALEPRTDSPSTRDLKTSHIWPSPAM
VTSVAGRIRIPNRSNEPQLLKRNxHFCQINEVFTPTVDQFQQHRHRSPIPIAEASYVRHSAKVRIDPDNLLPPQVKSQFY
SLLDEYDKVFDPNIQGYNGAAGPFEAKVNMGPVEPPQRKGRLPQYARGKLVELxExFHELEQLGVFKHPEDIGVSVEYLN
PxRYCGVATLFKGVRVYVRSAMGMPGSETAVEELIYRVLGDCLEESIVVKIADDLCCSGNTPTELINSWQRVFDVLYKWN
LRLSAAKTVIDPQSTTVLGWIWSSGTLKASPHRIAALASCPAPETVTQLRSFISAFKILARVIPHCSTLLAPFDDAIAGR
QFQEPIPWTDELRSSFNKAQSALFKNRAITLPRPDDQLWIVTDGSVRKPGIGATLYVTKGEKLHLKGFFSAKLRGGQATW
LPCEVEALSIAAATNQFSPFLIQSHHKACILTDSKPCVQAYEKLYHEEFSNSPRVATFLSTVSRYQASVRHVAGAAILPS
DFASRNAPVCEDRSCKVRAFVNRLEDSVVRRAPIQDIMSGQERLPFTSRPAWLAIQSQCSDLRRDHAHLTQGTIPSKKLN
NIKDVKRYLNVATVAKDGLLIVKREDPLRPTRARIIVPRQVLDGLMTALHIQLCHPSSHQLKLVTRRYLFALDIDKAIDR
FTHNNHVCASLRQTPIARSTHAS
>TRANSPAC_pol#LTR/Gypsy 1222-4509 [Drosophila fruit fly genus]
SIKCKFSDRGSRRIPYIEVQGKKRPLLFIIDTGAEFSVINDNLCHPKWKTDIDIEVKAMGNKIKIRKLCRFPCFQEFEAE
GYICEFLEYNFHNYFDGLIGCNILNDLHAVIDYSNKKIQLNNVYLDLLVQENHLDLGIHNLIPMNLICPQARSSINELIQ
KFEHIFYKEGQDLSFTSEIKHRIITKNDLPIYSKTYKYPEIHKDEVNRQIAEMLDQGIIRHSKSPYNSPLWVVQKKMDQS
NKQKWRLVVDYRKLNKETIEDRFPIPNIDEIFDKLGDCKIFSTLDLAKGFYQIEMDNKDVHKTAFSTTSGHYEFLRMPFG
LRNAPSTFQRLMNNILSPYTGQFCIVYMDDILIFSKNIGEHVNHLSCIFSCLSKANLKLQSDKCEFAREEIEFLGHTINS
EGLKPSQKKIDAICKINLPTNQKQIKSFLGITGYLRRYIKDYSKIAQPLIKYLKKNSKINTHDQXYVEAFQKLKILITSD
PIVVYPDFNKQFTIVTDASNYALGAVLMQDNKVISYASRSLKNHELNYSTIEKELLAIYWSTKFFKYYIYGRKFIIKTDH
RPLVWLNNLKEPNLKLQRWKVQLNEFDFDITFIKGKENALADGLSRIVKASTEEYDKNAQTNIEINNLDIFMLENTNTLP
EVTPKTKIINEDFSKDLIHIFANDIDDLETIHSADSDDLNFISITTNCLNVFKIQIQIIEAESDLSTFKILHNKKIRHIF
KSSGNQENMLKFMQEKLPEKGLVVIFCENLSLFVKFQEIYRQYFSSNKNLRILKSGTLLEDINDKEKLLKIIENEHIKNN
HRGINEIFISIREKYYYPKMQKFIQNYINNCKICNLAKYDRQPIKYNFNITETPDKINDIIHIDIWYPKRNIMYVTSIDK
MSKYATAQHIKDRSWISLLNAIKLRIQYLGKPKKIVTDNEFDIVVIKQFLLENNIDIHFTTPYKKTGNSDVERLHLTLNE
HMRLYNADPNNFDTIQENVYKAIVCYNNTIHSTTNIRPIDLFNNILCHEDISKLSEKLVRNKQTLNAKQDNINESNFSNI
FVKNNQVGKSNPKYKEISNYTQYGNYLINNKDNKRKIYKDQVKRKYKYQNEDCET
>TV1_pol#LTR/Gypsy 1054-4530 [Drosophila virilis]
MLTQPPFQVVIPTRIRVITHKINSIISPKTIRKLTTSFQQKLSQGRYQNPLNYQISPIHAECTKPSRLTSRDSNSGQIRI
WDNIGKFLFSKPREPNRNKSIHKNWIMELTKFLKCVIDTGSTINLMKTNRLNFPVYNETLKVHTINGVIELKQSIRLGAS
KICPSKQKFYIHDFSEHYDVLIGREYLEACQAKIDYAQGSVTLGEFNFCFRYNDEEVEEDMTAQECLDPPSTEDRPFNFA
INNELIENNEFRLEHLNSEEKEKIKKVLHEFVISSYHEGDNLTFTSYNLNTKFLTKHEDPIYKRSHTNILQLSNEEVIPF
SDLIKPIPNGLPVIIVPKRNDAFGKPKFRLVIDYRHFNELTINDKYPIPIMDEILDKLGKCQYFTTIDLAKGFHQIQMDP
GSIPKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIFKDCLVHLDDIIIFSTSLEEHILSLQKVFKKLREANL
KLQLDKCEFMRKETEFLGHIITTEGIKPNPNKIQAIVKFPIPKTPKEIKSFLGLCGFYRKFIPNFANIVKPLTLKLKGSK
INIKDRDYELAFEKLKVLITSDPILIYPNFEKPFSLTTDASNMAIGAVLSQEHKPICYASRTLNEHELNYSTIEKELLAI
VWATKYFRSYLFGRQFQILSDHRPLVWLNNMKEPNMKLQRWKIKLNEFDFQIKYVPGKENYVADALSRIQLNENFLGEDT
ISTRATIHSAQEDNSNHLQITERPLNYYNRQIEFEKGTENETKVTNYFHKTNIKITYKDMTNTHAKELIKEYLCTKKSVL
YFHNEADFPIFQEAYLEIISPNNSTKAMKTSTKLIDLQTYAEFKELILKKHKELLHPGIEKTINWFKETHYFPDYQNLIN
ECETCNIAKTEHRDTKLTFEITPEIANIREKYVMDFYIVGDKQFLSCIDIYSKFASLIEIKSRDWLETKRAILQVFNQMG
KPIEIKADKDSAFMCTALQLWLKSEAVNINITTSKNGISDVERFHKTVNEKLRIINSDSDVENKLTKFETILYTYNHKTK
HKTTNRTPADIFIYAGTPEYDTQANKEKLINNLNKKRTNYEIDTRYKHSPLVKSKTTTPFKKTGELRQIDDKHFEETNRG
RKITHYKTKFKKKKKTNQSKYNNYRSTTDSDQNIQAPA
>V1#LTR/Gypsy 46-1689  Massive internal deletion (matches AA 60-384 && 1466-1535 (end) of Gyles1 product) [Vitis vinifera]
MSGSNVEETSEQTRGRETEPTARGRGRGKKDKSRDVVANMEARLAKVELAMADTREGLDLIEQGMEKGLEDLREQIQDLR
EGVLVSQVQPVSHEEFVSFQGKVLSMLASMESRIEALATRMESRDQEVRQELAIYKAAVSARVMATQEASRVEVPKPHRF
SGKRDAKELDNFLWHMERYFEAIALTDEAAKVRTATLYLTDTATLWWRRRFADMEKGICTIETWEDFRREIKRQFYPEDV
AYLARKNMRRLKHTGSIRDYVKEFSSLMLEIPNMTQEELLFNFMDNLQGWAEQELRRRGVQDLATAMAIAESLTDYKRGD
SSKVESLEDSHAMGGGDEVPRDHNAPKKGSGKTSNVREGRDKAERKEFTPKIKCFLCDGPHWARDCPKRKALSAMIEERE
QEDEAHMGSMQLLGALQFNPKPSTPETSLLAGVQVKEEKGERAEVARTHMEEVTKGKVNYQGKRKQHSKHRKRTGLHPSE
ASREKEVKNILAERVTRRQGVPPVIEYLVRWKGLPKRQVSWEHADALRKFWKHIERFQNEATTRTSTA
>TY3_gag#LTR/Gypsy [Saccharomyces cerevisiae]
MSFMDQIPGGGNYPKLPVECLPNFPIQPSLTFRGRNDSHKLKNFISEIMLNMSMISWPNDASRIVYCRRHLLNPAAQWAN
DFVQEQGILEITFDTFIQGLYQHFYKPPDINKIFNAITQLSEAKLGIERLNQRFRKIWDRMPPDFMTEKAAIMTYTRLLT
KETYNIVRMHKPETLKDAMEEAYQTTALTERFFPGFELDADGDTIIGATTHLQEEYDSDYDSEDNLTQNGYVHTVRTRRS
YNKPMSNHRNRRNNNPSREECIKNRLCFYCKKEGHRLNECRARKASSNRS
>Gypsy-166_DR_gag#LTR/Gypsy 18-953  [Danio rerio]
MDSAGADQVRNAVTQQGILLGQQATQLTATSQEVEFLTARVAELNDLVQDLQLNLRAGRQAAFPLHPDHEPHANCPPQYD
GDPNSCRSFLSQCSLVFALQPRRYATEESRVAFVITLLKGRARDWATAVWDARAAFCATFDDFRNEMTKLFDRSAHGDEA
ASLLAQLSQNGRSVTDYSVQFRTLAAVCAWNEAALRARFRDGLDDEIQDEIATHDLPHDFDALVDLALRVEGRLRRRQHR
RATRSSWRAEEGFSNLLHTPPPIPDQEPMQLGHLRLTTQEKRHRLARGLCLYCGKPGHQAVRCPLKAPAHQ
>Gypsy-143_AA#LTR/Gypsy 438-2789  [Aedes aegypti]
MENYYMNADDLNDEEVAYELKLRNSAIGRSTDNRRVLRYLIRREENQEFPTSNTINDEYVTVAAAVKQIEDSLLAGRPIG
CRSRLIHHYRRLRRCHATTASGEQTRLALMKFVFGLAGRYFQLDLNRLGAVSNAGVSSEPTGVVSPPNQSVGGQMRLATP
PMVNPEMQSSAEGAVGGETRNDAVEDPLQMSENVLNPFIVENRHSLDSRFPAPGNLQSEMQQASLGRMSAEGNPLPFRNV
RFRSGEDLSCLNPPRQNLSSVDPEASGGSVPQPLNVIGFNEERNSVAGTVPKPSRGSRTDFWSMGPPVSQGEPSSNPQEG
QYRPWLDERVRQPSNAGNSVPEPRETVSVQPANTNANQQLNLREYVHISEIENYVQSCVRTLLNERSDRPLVRETVVNNV
SEQFANFGISSTGERNESVPRLSPPLQLQNAPGPQSSSNNIPFTPLLGIGTERNSMPFQSQLNSTQMPQFAGNTQSPIQF
PASLSSGNNGTLGQRRLPHQTCNIIEKWPKFAGDSNPVPVIDFLRQIDLLCRSYQVSKEELRTHAHLLFRDDAYVWYTAY
EPKFNSWDTLLYYLQMRYDNPNRDRFIKEEMRNRKQRPNELFSAFLTDMETMAQRLIKPLTEGEKFELIIENMKLSYKRR
LALEKIYSVEHLAQLCYKFDTLEGTLYGQRVQTKPHLVNEVLLEEEDEFVVQADDEEEIAVLQAEKVTSNKARLSPADNA
RSSFNNGQRQPLCWNCRKVGHIWKECDRQKTIFCHVCGHPDTTAFRCPQQHNIRPLSEVKSKNG
>Gypsy-167_DR#LTR/Gypsy 175-4939 via tfasty with Gypsy40_DR, 1 frameshift and 1 stopcodon. [Danio rerio]
MEVFSVQNFIKNPTVEQISRCRKQDLLLVADHYQIEVSKHSRKAELRDCILENLYEKNVLPVEKVSENVDKVILDDVAVE
HLSVGAEEDLQGQAKVDAEAKAGLPPFDPFSPMSSVSRSDARLKVRLARLQLEAHDKEQARQAEVNLRLEIRKLEIEAET
QIKLRELDLEAMKISSCSAPPSTSTPATALPPTATDVSTPTDTAPHAFDIGKHIVLVPQFRESEVDSYFTAFERIATSLH
WPKDVWSLLLQCKLLGKAQEVCSTLSLEDSLKYDCVKSAILRAYELVPEAYRQRFRGCRKNGTQTFVEFAxEKRLLFDKW
CTASKVDDMESLQELMLLEEFKNCLPDRVVVYLNEQKVNSLSHAAVLADEFILTHKNVFAPVRSDKSQIAQSQPSRSKKS
TVPEERACFYCRKQGHVISDCLVLKRKQQSQVKSVGFLNTRTAFKIPDNNKNNDIDDKYKPFILEGFISLSENCDERVKV
KILRDTGALQSFIVADKQLSGDTYCGSNVIVQGIEMTCITAPLHRIHLTSDLCTGFVRVAVRSSLPVKGIDFILGNDLAG
GKVTPVLEVLDKPDVSIQLDSCSDPEIFPACAVTRAQSRKMGNVVELADSFFSPFLAGENFTIEDSLENQAGKANVDVTD
NNLLQLPVSRERITMAQKEDQSLVSLINGAVSGVENKKAKSTFFMDKELLMRKWSLSADDDLEWDAVYQIAVPTPYRQHV
LYLAHDHQFAGHLGITKTYDRILRHFFWPGLKKDVVKYCRACHTCQVVGKPNQIIPPAPLIPIPVVSEPFQHILVDCVGP
LPKTRSGNQFLLTIMCVATRFPEAIPLRKITAPVIIKALIKLFSTFGLPQVIQTDQGTNFLSKLFEQTLQSLAIKYRVSS
AYHPESQGALERFHQTLKSMLRKILSTTKDWDEGVPLMLFATRETVQESLGFSPAELVFAHQVRGPLKVLKERMQSVDSS
AKTNILDYVSKFRERLHTACTLAKDALTTAQKGMKRKYDKKVVVRSFTAGDKVLVLLPVSGSSLSARFSGPYIVQKKISE
TDYIILTPDRKRKTRVCHINMLKAYHAKETLGKDSSVSNTEPAVPTITVTQSSFEENRDADDDDVVLRHTQQCVRLKNSD
IFSDLNSYLKHLSCDQRKDIIALIFEFNGVFHDVPTQTNVLKHDIDVGTAHPIKQHAYRSNMNKRSLMRKEVNYLLENNL
AKPSHSPWSSPCLLVPNTDGTYRFCTDYRKVNSVIVADSYPLPRMEDCVDNVGTARFVTKLDMLKGYWQIPLTDKASDIS
AFVTPDSFAQYTSMAFGLRNAPATFQHLVNLVLGDLPNCSAYLDDVVVYSMTWCEHISLLKAVFTRLLKASLTLNLAKCE
FGQATVTYLGKEVGQGKVRPVEAKVVAILQFPVPTTRRELRRFLGMAGYYRNFCKNFSTVVNPLTSLLSPSTPYAWSDAC
QNAFDCVKTLLCSTPVLSAPDFAAPFKLEIDASAVGTGAVLIQEDGNGIDHPISYFSRKFNKHQLNYSTIEKETLALLFA
LQHFEVYVGSSNLPVLVYTDYNPLVFLSRMYNHNQRLMRWSLLVQNYNLEICHKKGIDNVMADALSRV
>Gypsy_6B_env#LTR/Gypsy 5094-6556 [Drosophila yakuba]
KIHFHRCRIFILLSLALVSAHVTNYSQTKYIPIIDGEILVWEELAYVTHSANLSEYMRVIEETSSMNEMFPQSHMRKLLE
VDTLHLRDTLDSLKVHHRIARSLDFLGSMLKVVAGTPDAGDLERIRFTEWQLTQSNNRQIKINTRIQSRINQLTTTVNQI
LQTHKNTQIDTGHLYETLLARNRILMMELQNLMLAVTLAKNNIVSPNILDHADLKSVWLKEPTDTPIGDLMSASSVKILQ
SSNMMHFIIKFPKIKLSCKKVTIFPVACKGVMLRITDNMVAKCGEVVHTIKNCIPTPGATFCQLSTESSCARELHAGVLA
HCESQPSDLHPLTRVDEGIIIINDRPARVTVDNETEVYLRGTHLITFNDRVVINDTTFVNHDKAQTRAPGVANSPSLNIT
ANRDILSLPYLHQLSERNLEFIKEFGREIDTDHSHRIIFVAAAICCALVCIGIACLRYIGARRSAIQLNGMIAELGPTED
GRNLEGG
>Gypsy-169_DR#LTR/Gypsy 44-4321  [Danio rerio]
MTTPSRMPFAEAIQALTVLHQQQHHALVELKNIQEQRFQVLMEAQREDREQIRSLLTQEIRPAPTSAAHPPITLQKMAPE
DDPEVFLDLFEKMAEACGWPRAEWPVRVIPLLSGEAQIAAQQLPAQNLLEYAHLKRAILQRAGRNPEEQRQLFRSLVLAE
GGRPFVFAQQLRDACRRWLVQDGRTTAQLVDAVVLEQFITRLPSRTSEWVQCHRPDDLETAIRLAEDHLVARSRVGEITS
LSSPPLSLPLSLSRPVPRPRVRRPPTPAPRRRCAKADXQNVPRGAGPYQDGGVELRPLAVSQTVSGLSPVQSVGPAGPGG
IVGRSGPMHWRRGHEDSAPKICSVKEVSALIRVPATPIVAPGRDGLYRIPVSIKGGTYQALVDSGCNQTSIHQSLLQDPA
LDMSRTVRVRCVHGDIIHYPLTAIDIQFRGKKHRVEVAVNPHLKHPLILGTNWPGFNRLLGVLCAGASWKKKSPDRGRVA
QLGESQAVTSRADSGEGLGISRCKDFPLEQSRDDTLKHALERVQVIDGKILQPDRPLSYPYFAVINDRVYRVTQDAQTKE
DTTQLLVPKSRREMLFQAAHSNPMAGHLGQAATLNRLMTRFFWPGIHGDVSRWCAACSECQLVNPPATPKAPLRPLPIME
IPFERIGMDLIGPLERSARGHRFALVLVDYATRYPEAVALRNISAKSVAEALFRLISRVGIPKEILTDQGTAFMSRTMRE
LYGLLGIKSIRTSVYHPQTDGLVERFNRTLKSMIRKFVHEDAKNWDKWLEPLLFAVREVPQASTGFSPFELLYGRQPRGV
LDVVREAWEDEPSXSKNEIQYILDLRAKLHTLGRLSTENLLKAQDDQRRRYDKGTKLRKFSQGDKVLVLLPTSSSKLLAK
WQGPFVVTRRVSDLDYEVVRSDRADSRQIYHINLLKQWREPEDVALATLVTNEDDLGPESSGRERPSALVTGGDHLSASQ
LLDIRHLQREYSDVFSPLPGRTNLIQHHIETEPGVVVRTRPYRLPEHKKKVIQEELSNMLKMGVVEESHSDWASPIVLVP
KTDGSVRFCVDYRKVNAVSKFDAYPMPRIDELLDRLGAARYYSTLDLTKGYWQIPLSPISREKTAFTTPFGLHQFVTLPF
GLFGAPATFQRLMDKILGPHTAYAAAYLDDIIIYSNDWQRHMQHLRAVLSALRRAGLTANPRKCAIGRVEVRYLGFHLGH
GQVQPQIDKTAAIATCPRPKTKKEVRQFLGLAGYYRRFVPNYSALVSSLTDLTKKEGPDTVQWSEQCQQAFSKVKSILCG
GPLLHAPDFALPFVLQTDASDRGLGAVLSQEVAGVERPVLYISRKLSKSEAKYSTIEKECLAIRWAVLTLRYYLLGREFV
LCSDHAPLQWLHRMKDTNARITRWYLALQPFKFKVIHRPGVQMAVADFLSRAGGGEGCRPDGSPA
>Gypsy-139_AA#LTR/Gypsy 2481-6020  [Aedes aegypti]
MSNSTCTFMVDSGADVSIFKLNKVRNNQLLHQDQKCMISGISGNKIETLASTTTRLTFQNSFTLEHEFQLVDEQFPIFTD
GILGRDFLAKFRCTIDYESWTLNFRHNNEEVNIPIEDNLNEGIILPERSEVIRNLNYLNITEDMLVCSQEIQPGIFCGNT
LASPSAQYVKFINTTDKPALIRPFTPMMIPLKNFIVAKIDKNNNVPTRVEKIKQKISVSNLPLTAMKPFETLIEEYNDIF
ALGEDNLTTNNFYTQNIELSDSVPVYIPNYRSIHAHNEEIESQVKKMLDNKIIEHSVSAYNSPILLVPKKSSTNEKKWRL
VIDFRQLNKKILADRFPLPRIDTILDQLGRAKYFSTLDLMAGFHQIPLDSNSRRFTAFSTTSGHYAFTRLPFGLNISPNS
FQRMMTIAMAGLTPECAFVYIDDIVVIGCSINHHINNLKRVFDRLRRYNLKLNPEKCQFFKTEVIYLGHKITDQGILPDD
SKFEVVKNYPKPTNADDIRRFVAFCNYYRKFIPKFAQIAKPLNNLLKKNTTFSWNEDCQTAFETLRNKLLSSSILKYPDF
SKTFTLTTDASNIACGAVLSQDYDGNDLPIAFASKAFSNAESKKPTIMQEMIAIHWAIDHFKPYLYGRKFIIKTDHRPLV
YLFGMKEPTKKLTQMRLDLEDYDFEIHYIKGRDNVGADALSRIVTSEEIKNNNILMVHTRAMTKKQQGHDKNHIVSPKEK
IDHLLVYETESPAEIRKLQKMSISMQQNMIVIKIMNQNMKKTLITLEQDIIHENESQTLEFALSEMNEILRNKKIAMSTN
NEILTHIPLQHFKRIALDVIRNFELILYRPPKELTNSEEIDNILHDFHMTPTGGHIGQNRLYLKLRDLYYWKGMRTTIIK
FVKACKLCKINKVTRRTKEASVVTTTPAKPFEIISIDTVGPLPRTIKNNRYCITLQCDLTKYIIIIPLENKEADTIARAL
VQNFILNYGTFLELRSDQGTEFNNEVLKKISKILNFKQNFSTAYHPQSIGALERNHRCLNEYLRNFSNVHHNDWDEWTKF
YEFSYNTTIHTDTEYTPFELVFGRKAKLPQDMRKFSTEPIYNLDEYYSELRFKLQKSSEIARKNLIEQKTKRTNELNKNL
NPINVAIGDLVYITNENRKKLEPHYIGPFKIKHIDDMNCTIVNINNKKENKIHKNRIIKM
>Gypsy-54_DWil_gag#LTR/Gypsy 782-2305  [Drosophila willistoni]
MSVRHSHESIARALQENDPFCGICHETLNENEAIASSPCKHRFHNKCITECLKTSNLCPTCKHPCKMKQLVRSNIDLETE
LQEASKSGEPTTQPVTPYNTRSGPGRPAKTKPIRNQGAIQRRGIGTRSSTTSRQHRPPPTQASSPRPSTPPDYTTLIQTA
IQAQQEQLVNHLALLIDDKLASIRLERNEPNPIPERSAAFSLPAPRQEEHYNHTQTSRNLSSQTQNSNRGSRANSTLSPE
KVASIMQSWRIKFDGSKEGMHSEDFLYRVRSLAEQNLNEDYQVLCDHLYLLFAGKANDWFWKFHRAHPSFDWNKFCVEFR
KKFDEVDNDMDTWELINSRHQGENETFEDYQFSVERLVGRLNTQLSEDSLVKLLIRHSKSAIRYELMHLGIFTLSHLRQE
VRTHEQFAKQMKSIPTKNTFGHRSKIAELDSNFENYMQEEVEAFQHKLTCWNCRKPGHRFDICLEPRTVFCYGCGAVNVF
KPRCRNCNPQENRPTDAAINTSLSHPDQ
>Gypsy-52_Mad#LTR/Gypsy 108-6114 via tfasty with Atlantys2_gagpol, 1 frameshift. [Malus x domestica]
MGSEGSHSTQNDTPLAHSAKQRKKEGKRVLLQAKVDELEAQNNKIAMRNEVLQEQYEKLFETLHEARQAQTRELVAPVEV
NHQLGALQHGGSHAFDIDIPDREQITPRLDNQHEASLNPVASTRTMRSGGRHLFAEGAEGSKAVFRDCRDFLKQRRENSI
HISSKINDPRISERLGPLPRPEPATNLGKGQQVLERHEGTGDSEVFRQTYPGSQYSESREKSHALDQTFLIPRGDGDLRK
KAPVAHNSAQDPLVLQLLEEVNKLKAERQAEIPDWNQPRPGPLTRRILNTPLQAKTKQKLGLQLYTGKEDPIEHLNLFES
TMAYRMHTDEERCLLFPSTLSGGALNWYCRLTPETVDSFEELRKLFVSQHIFQTDRLHSADDLYTIRQKPDESLRMYAGR
FSHEYSRCAEADDKTALKAFTAGLRDCFFKYMINANTWKTYSEVMAQAYNHASAEAKTYQEKPPTTILYQQVGGGSQTHL
NEKTSTFQTAVAPPHALHNASPNQQTYQFQGKRKDFHPHHSHFSKKSKGHYPDNQGYRHNNARPQAVNAVGQTRVKIPPT
PRYETYTPLNATCAAIYPSIAHLIPKPKPRHPDYTPPNNAGMFCCYHEHNGHDSEKCIILRDRIEALAREGKIDQFLLHP
QRDNRNQRQVNVIYSISGGTPISESSNRAMKNSERILRPGHQVFHVEDIRGGKYQKPNWDPICFYPEEERGIIYPHNDPL
IVEAHIANFDVRRILVDTGASVNIMFAEAFRALSVAEHLLDRSISPLISFSGDIVQPLGSIHLPFTIGTGPYTATITTNF
LVVDCPTAYNVIFGRTGINDLKAMVSTHMLLMKFPTPHGNGYIRGDQLSARSCYNTSVKQQHLPGPKETLSVHDQVTKTS
LDEANLDLPDSNNQPDDPRDDSFTQQAQPAEELEKVPISRDYPDRMVKIGTTLSPPLRLALISFLKENTEVFAWSYEDMP
GISPDVICHRLSIDPKIKPVRQKRRSYDAERYEAMKAEVEKLKGIGFVREVNYPTWVANVVLVRKNPTKESLLLQKVLWR
MCVDYTDLNKGCPKDSFPLPLIDRLIDSTAGCELLSFMDAYSGYNQILMNPSDQEHTAFTTDRGLYCYKVMPFGLKNAGA
TYQRLVNSMFAEQIGKSMEVYVDDMLVKSKHADQHITNLSETFTILKRYRMRLNPNKCAFGVGSGKFLGFMISQRGIEAN
PEKIKAILDMKEPVTSKDIQSLTGKVAALTRFISKATDRCAPFFKALKGNKKYITWTEECAKAFRNLKEYMSKAPLLSKP
EVGDTLIIYLSVSASAVSSVLIRMDSGVERPVYYASKALQDAETRYSNIEKLALALVMSARKLRPYFQAHAIIVLTNHPL
RQILQSPDTSGRMIKWAIALGEFDISYQPKPAEKGQAVADFIADFTYPVDIASTPEAVASLPSEAQKVESTTSAWSLYVD
GSSNQQGCGAGLVLTTPDKVAMEYALRFKFKASNNEAEYEALLAGLRLAKHLGVKQIDIFSDSQLVVNQVTNNFDAKDSS
MAAYLAQTQLLLKHFHYQITQVPRAANSHADALARLASAVEDKIGRKIHVELLATPSTMAAEVCNLQQGDSWITPIYNFL
AHGTLPNDKVQAKQIRYKSTRYLIINDQLYKRGFSLPYLRCLTPAEAEIVLREIHEGVCGDHAGSRSLAHKTFRQGYYWP
TLHQDAIKVSRSCDKCQRYATIPHSPPEPLTPMISPWPFAQWGLDLIGPMPAGKGKVCYAVVAVDYFTKWAEVEPLATIT
EAKIEDFVWKNILCRFGIPNAIVTDNGRQFDNKKFRLFCSKFNINLCFASPAHPQSNGQVEAINKIIKRTLKTSLDKAKG
CWPEFVPQVLWSYRTSYRTSTGETPFSLAFGTEAVVPVELEASNIPSPELHSKENDKQLTLNLDLVEEHRNQAHLRNVAY
KQRISNYYDSRVKPRSFKIGDWVLKKRLLCDRVPSEGTLSPNWDGPYEVIGISRPGSYTLRSSDGKTLGHPWNADHLKYY
YK
>Gypsy-56_NV#LTR/Gypsy 150-4213 via tfasty with Gypsy23_AG, 1 frameshift and 3 stopcodons. [Nematostella vectensis]
MAASGLFGRVGEYQENRETFKSYVERMEMFFLANGIAETPGEDNEAANKVVRERKRAILLTELGPEVYTTLSNLLVPAKP
SDTPFDEIVQALGKHYNPPPLEIAESFHFGTRVQKEGETISDFIVALKKLSIHCSYGEFLNRAQRDRFVCGLNSAKIQNK
LLNTEDLTFDKACQISKAMEMAEKNTHEFNLTTEKASSLQGTVNKLGTARKGNTEEPSCYRCKGKHYASNCKFKLAKCFK
CSKVGHIANACRSKPCDPSDKSRPSPEPSGNLHNVTGNKSNVYDVMYKESDGFDELGIYSIATDRPRRKRYTVELSINGS
MCEMEVDTAADYSVMSKSTYMQKFSHIPLLPSETVLRTYTGETLEGCGEMQCEVEYKGNRYHLAIFIADYNGRPTLLGKD
WLSxITLEWDKIFRVNRLTVVPNHDKSQLDALISKHSELFEEGYEGMTGFEAHITMTDGAKPVFFKPRKVPYALKDAVER
ELDKLEKHGVIKKTQRSEWASPIAVVPKADKSVRICGDYKVTINQFVEDEQYPLATTQDLYTALAGSKVFSKLDLSHAYA
QLSVDEESQEYLTINTYKGLYSYTKLPYGVKSSPKLFQAKMDQILQGLDKCVCKQDDILIGGDDWQENIGILSEVLARLA
KHNVHLKLPKCEFLKPEVTYLGLRINAEGLHPVKEKVDAVREAPLPTNVSELRSFLGMVQYYHSFLPGLATTLAPLHNLL
KKDIPWEWTTECQHAYEACKQGLTSEALLVHYDVNRSLKLDCDASSYGIGALLSHEMDDGQERPIACASRTLSSSGENYA
QIEREALSIIFGVKKFHQYLYGRKFTLVTDHKPLLSILGPKSAIPTLAASRMHRWAILLSAYDYEIEYRSSQEHSNCDAL
SRLPHEDSSVGSEGTIYMVSAFDEDFLLTAKAIAQQTQLDPVLSRVLQYVMSGWPEVCEDENLRPYFSRKMELSCEQHCV
LWGSRVVIPLASRKKMLKELHWEHPGMCGMKAIARTCVWWPKMDEQIEEACRVCSVCQSVRSAPPSAPLIPWKWPTRPFQ
RFHIDFCQDGNDYFLVVIDSHSKWIDVQHMTSTTALRIIDELRLIFANHGLPEEVVSDNGPLFPSxFAEFMHKNGIKHTL
VPPYHPQSNEAAERSVTVVKEALLKQVIQGTKGMSMKNRLDSFLFRYRTTPHSTSGMSPSELMVKRQLRTRLSLVKPHLA
DAIENKQEKQKFxKDLKCRKERQFERCDRVRVHNTRASSKRDKWIPGTVVKVCGPRTYVVKTGHRTRYVHTDHMIRAHDD
ICDDGNEPDITVPESCEQGGTESETMIQSDKVNQPAASISDHHVTPVKPQDSSVTQTPVLRRSQRVVKPVVKLDP
>Gypsy-94_GM#LTR/Gypsy 24-4375  [Glycine max]
MAEHTTRKTTTDRLEDAISRLSIHHDSLSDKHDTLASKVDSILDRLNQLTSLPPPPSPVSPQHRPPVKLDVPRFDGTDPL
GWIFKITQFFDFQSTPDEDRITMASFYMDGPALSWYQWMYRNGFITSWNGLLQALETRFAPSYYDDPRGALFKLNQRGSV
NDYLTDFERLANRIVGLQPQFLLSCFISGLSPEIRREVIALQPISLPQAAALAKLQEDKLNDRRRSFRPGPPTPSHPPPP
PALGPPSSTHPKTPTAKPIFTHCTPEEMAFRREKGLCYNCDEKWNSSHRCKGRILLFIADEPIPSPPPSPPSVSPPQDLE
TPSSPTLPHISLHALSGLSAPETFRLYGFINGARLTVLVDSGSTHNFVQPCVAKFLHLQVTETKPLRVMVGNGSVLECHQ
VCTTTLLLQSHSFTVPLHLLPISGANVVLGIAWLKGLGPVITDYTTLTMQFTHLGLPITLRADVAFGPTPISATQMRRLI
QTHSTSAFFHLALLPEPPPTLTHPIPEIQSLLDRFTPIFQTPTQLPPPRQIVHHINLQPSAPPVNVRPYRYPYCQKTEIE
KQVAALLNAGLIRLSQSPFSSPVLLVKKKDGSWRMCIDYRALNSITIKDRFPMPTIDELLDDLGTASWFSKLDLRQGFHQ
ILMAEDDIPKTAFRTHQGHYEYRVMPFGLCNAPSTFQATMNALLQPFLRKFTVVFFDDILVYSSTLADHLFHLTLVFEAL
LQGQFYLKQSKCLLAQRQLEYLGHIISARGIEPEQTKITAMLSWPVPSSQKALRGFLGLTGFYRRFIKGYASIASALTPL
LCKDKFLWSSTAQEAFDQLKKAMTRAPVLAPPDFTIPFVLETDASGSAMGVVLMQKGHPIAFFSKQFSPRMQRASTYVRE
LHAMTTAIRKWRHYLLGHQFTILTDHRSLKDLMSQVIQTPEQQYYLTKLLGYDYQIAYKPGTSNVVANALSRIDTDHDST
LLILSYPHFDFMTQLRQSLQSSPDFQQMRDSILRDPSAYPDYRIQDELIICKGSIWLDSRNPFIQTLLSEFHSTPLGGHL
GVAKTLHRLQANFVWSSMRDDVKLFVRQCSTCQQLKHLTRRPAGLLQPLPVPTGIWEDLSLDFITHLPKSHGYTVILVVV
DRFTKGVHLGALPAQFTASKVATLFFDIVCKIHGFPHSLVSDRDPVFVSAFWRELFKLSGTLLRLSTAYHPQTDGQTEVM
NRVVQQYLRSFTHSRPSEWYQFLGLAEWSYNTSLYSSTGITPYEATFGKPPPSIPDYVFGSSRNEAIDSLLTNRQLIHAS
LTRRLLKAQTDMKKYADAKRRDAEFTVGQWVYVKLRPYRQGSVTKTTNQKLAKRYFGPFEVLERIGNVAYRLKLPADSRI
HPVFHCSLLRPHSGPLPSHHHDLPPHAVGNQPLLEPLSIISSKMDMNTTPPTPLVLVQWVGLPPEEATWESWSTIRDTFH
LEDKVVFPVGG
>Gypsy-74_NV#LTR/Gypsy 97-4017 via tfasty with GYPSM1_pol, 3 frameshifts and 7 stopcodons. [Nematostella vectensis]
MAKPNFENRKRLNCKEISEDNFYVDVPRIRERSLVREVIDENLSSSGTCNGNSLRVLNAQLGILSSERVTKSTSAKPHCD
TDVPAVPSGLAGLSMDTKGLSFNSIQHSDAGNKCIIQFMGHTNSMKIEGHIDDKHAVFLVDTGAHVSAINKSVWDQLTHQ
PFLDKTNLRAITTASGEPLQVHGTVSIDITLDGHNFPLTAHVIEDLTYQCILGRDFLSQHNDDLNFQESKLVLTLPETFL
LLYLTMxRKTQTRQMYCSVIANQYFVLPPQSGTLIPGKIKGPDHTHTVGLIERREDLPDKFSIVGASELVTVSEGNMVPI
RLLNPTSEGVKIYENTRLASFSKLDNHTKTIEFPGEQDMTFQSGHTSPGSTCDTSHLPDISHAAFSDANKAKLQQLLYDY
RDVFASSVEQLGRCSIIEHIIDTGDASPIRQRPYRTTPEKREEIDKQVTEMLRNNIIQPSTSAWASPVVLVAKPDGSMRF
CVDYRKLNAVTRRDSFPLPLISEVFDSLSGAQVFTSCDMKVGFWQIQVSEESREKTAFIIGLWEFQVLPFGLASSPLTFx
RLMGHIIRGLEYKCALIYIDDLIIFSKSEEEHLEHLAEIFERLRAANLKLNPAKCDFAKKKLQYLGHVITPEGISPSGSK
VKAVSEYPPPRNLKELRCFLGMINFYRRFIKDFAAIARPLNDLTKKSVQFVWSPECNQAFQTLKDSLLSAPILVVPDFSK
AFHLITDASATGIGMTLAQQDEKGTERPIAFNGRSLNSSERNYSATDHELLAVIEAIKKFSPYIHGRKVFIHTDHAALQF
LAKAKDFQGRLARWALLLQPQDYEIVYRPGKSNVVAGALSRRPNENLQLYAFNQGPRQFLDIFHHQRKDKDLAAIIDFLE
SHVLPKDNKLARQLILTKDNFYLDKHGLLFHLEHKNNRRDQVPISQLVIPKSMRHEVLTHAHDHITSGHFGTNKTYHKLR
LRYWWKGMYQDTDHWCKSCTDCSMRKSPKNQLKATLVPIPVEGPFDRVAMDILGPFPTSSRGNKYILVISDYLTKWPEAI
ALPDTTASTIAEVFVNEIIARFGCPRTLLSDRGPNFMSSLVGEICRIFKIRKINTSGYNPKCDGLVERINSTLLQSLSMY
VSSSQKDWDRFIPCCLFAYRVTPHESTLETPHYLLMGRDARLVIDTKLLPPENLSSSVSEHRKRIVEAVEFSQSLAxENI
MRTQQKMKLFYDRNAKIRNFEVGELVWIFTPRTPKNKCRKLISKWTGPYRLVKRGASGVHFFVRTLDITVLDSQxMxTAx
NELSTKTKDLxTPLTMTTLTNLTWMKTI
>Gypsy_6B_gag#LTR/Gypsy 483-1862 [Drosophila yakuba]
MQPSFSQYRNSTPYSTDSESDCENQPSPLRRTTANSPAMAIDPEQLRAVIQAVVANTLADEAAKNELAQNEMRQKIQELA
SQLAATQVAPTSAVAPAIRAYEPIDITSGVPCNMTLDAVKYLPEFSGSQESYVSWRQAAVAAYRIFKDYNGTSRHYEAVT
IIRNKIRGAANNVLSSFGTVLNFDAIINRLDFTYSDKRPMHVIEQDMSTLRQGSNMTLLEYYDEVEKKLTLLTNKAHMSH
EPSAANILCEKFREDALRIFISGLKRNLTDVLFAAKPKDMPSALALAQEVESNHERYVFAASFARSQEDKDRKPTAKAQG
RQLDKYDRHDPQPSNTKNPYFNRQHKAQVHADPQGTKNYKDDGPPEPMEVDPSVSKLMQPTQANAYRNRRPATSERTGAV
RKQQKVNFITQNAEEKTGAYAAAASKAESKIDDDAITGYDSDYLNFLGENPCYPSSDEE
>MGRL3_gag#LTR/Gypsy 96-1475 [Magnaporthe grisea]
MAKNDAERQPTAQLGRQEVESDHGRPETGPPRAERQRQQPTVRTRAQRRPSTRERVGNIVTVRGEDETTDSREDTDEPVR
LDDWDQRVLPSIDIDGPTRKTNEAPLSEEEHQMIVDELEDRIAHMQDQIDLLNNTKQENEATISRLLREARSRRETTAIS
IGTGSGGSHHKSRVKDPPTFSNNPDKDEVTFEVWHRRIENKLLLDGAHYPTDADKRAYVESRLGGDAADTLLPYLNDTHP
DQITTYDGIMGHLREEYKDTKLEDTARDELDKLIMSTKDKFMIFKNKFVKLAGQSGLPKRSWKRELHRRLPTNLRVAMVI
YHQDTNVSFDAYVRTADGISYDLTKAYASRTEDKNKTKTTSIKKTTGGSVIPRAGGPARTTGGAVDEGQKGKLSVEEMRG
LIRTGKCFQCREPGHISRNCPNGDTGRPTISEDRVNQIIASYHGKGTDMFGEDVVMSEN
>MEGY_MT#LTR/Gypsy 138-5156  [Medicago truncatula]
MAEERTLKEYSIPSSDEPCTIIVYPTVQGSNFKIKPALLILVQQNQFSGSPSEDPNLHISTFWRLSVTCKDDQETVRLYL
FPFSLKDKASNWFNSLKPGSITSWDQLRREFLCRFFPPSKTAQLRGKLYQFTQKNEESLFDVWEHFKEILRRCPHHGLEK
WLIIHTFYNGLTSSTKLTVDTAAGGALMNKDFTTAYALIENMALNLFQWTEEKATIDPSPSKKEAGMDETSSIDYLSTKV
NALSQRLDRMSTPTFSPPCETCDLSSHSNTDCNLSSVEQLNFVQNGQRVVQKSHIELLMENYFLKQSEQLQELKDQTRLL
NNSLATLTTKIDSISSHNKISETQLSQVVRKVNHPNKMNAVTLRSGKPLEDPIRRTETDNSEKEICEPPSRETRAEREKP
RVEENLPPPFKPKIPFPQRFAKSKLDEQFKKFIEMMNKIYIDVPFTEVLTQMPTYAKFLKEILSKKRKIEESETVNLTEE
CSAIIQNKLPPKLKDPGSFSIPCVIGSEVVKKAMCDLGASVSLMPLSLYERLGIGELKSTRMTLQLADRSVKYPAGIIED
VPVKVGEVYIPADFVVMEMEEDNQVPILLGRPFLATAGAIIDVKKGKLAFNVGKETVEFELAKLMKGPSIKDSYCMIDII
DHCVKECSLASTAHDGLEVCLVNNAGTKLEGEAKAYEELLDRTLPMKGLSVEELVKEEPTLLPKEAPKVELKTLPSNLRY
EFLGPNSTYPVIVNASLDEVETEKLLYVLKKYPKAIGYTIDDIKGINPSLCMHRILLEEDYKPSIEHQRRLNPNMKEVVK
KEVLKLLDAGVIYPISDSKWVSPVQVVPKKGGLTVIKNDKNESIATRTVTGWRMCIDYRKLNKATRKDHFPLPFIDQMLE
RLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSV
HGSNFDDCLTNLEKVLERCEQVNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAG
FYRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIMCDASDYAVGAVLGQRNDKK
MHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVGSKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEI
KDKKGVENVVADHLSRLRETNKDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYW
DEPYLFRRGSDGIFRRCIPENEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITK
RNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDYVSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISD
GGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTP
FKLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKERTKTWHDKKIIKRHFKSGDL
VLLFNSRLKLFPGKLRSRWSGPFQVRTVYPYGAIEIFSEETGSFTVNGQRLKIYNTGEVNEVVADFTLSDPP
>NOMAD_pol#LTR/Gypsy 2355-5555 [Drosophila fruit fly genus]
GRGKFYDQRLSSVPYLEYATERGERLKFLIDTGANKNFISRRLAAGCTTVRKPFSVLSAAGNIMITHRLVGKFFKPLGND
SDITFFVLPNLHSFDGIIGDDTLKDLKAIVDRKNNCLIITPGIKIPLLARASINVNPLLAAEHPDGTQEILNSLLGEFPR
IFEPPLSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQ
YRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNA
PAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIK
ADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLK
SILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLY
GAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIPPQLNQLSTDLDANPEDDMQSL
ATAHSALHDSSRLIPHVESPINVFKNQLIFDTTRSKYLCEHPFPGYTRHLIPLKDGSLADLTNSLQSCLRPVIINGVKIP
EAHLQRFQSICLANFLLYKIRITQRLVADVSGAEEICEIIEKEHRRAHRGPTEIRLQLLEKYYFPRMSSTIRLQTSSCQC
CKLYKYERHPNKPNLQPTPIPNYPCEILHIDIFALEKRLYLSCIDKFSKFAKLFHLQSKASVHLRETLVEALHYFTAPKV
LVSDNERGLLCPTVLNYLRSLDIDLYYAPTQKSEVNGQVERFHSTFLEIYRCLKDELPTFKPVELVHIAVDRYNTSVHSV
TNRKPADVFFDRSSRVNYQGLTDFRRQTLEDIKGLIEYKQIRGNMARNKNRDEPKSYGPGDEVFVANKQIKTKEKARFRC
EKVQEDNKVTVKTRSGKIFHKSDLRN
>Ogre-PT1_orf1#LTR/Gypsy 574-2550  [Populus trichocarpa]
MAVNREVTTVEYGLESESLHMTEGDCPRLDDSGIPLLKDVRCVINDAIRLLPLTKYLADETEFTKIYGRILHLLNVPVLP
LAIKALIHFWDPDYRCFTFRDVDMVPTLEEYGVLTEFPEDIHKVYFHQRIEDTIEELAKLLGIQQMSLYREKSDSGGLRW
KRLEELLITKKSNPCAKLEVYRILALGIFGLILCPSTAGIISVEAANLFVEYEKTKINPSAAILAETFLSLNHCKKSGKG
FMRCCVPLLFIWMVSHIESETPIFRNFWWFDQRPLELFVSNEWNFFSEDDWRVKLQGIPRSNFNWRAPWMRNVTYLMGCG
KKPWVPLIGVTGYISYAPALVARQFGGIQSIPRTVDLAQFIGVYKGATMEMLESIRQDWKSLVLVKKETGLRNPTVSEKY
PEWRNGGVSYMAEVSESVGIRRKRVNCEEELRKQVKSLQAELKAKEEQRVSLERQLAKEKGVRKIAEEERDSVGQDLIKA
KADLETQKIINQDMTYYMAKAKHWEELAIKTQAILKMRRADIVKFKDQLGKAEALTKIQEERKTELNSHKAEAEALRSKL
DKEKLKTVQLIGNQKMLKQHNQTLDDANNFLSRNNLIHTERIRELQDQIDRAAAEAHLLRVEARQVGGDIMKYRRSTDNT
DLFLKAIATRGSVFSPVID
>NONAUT-5#LTR/Gypsy 349-4422  [Schistosoma mansoni]
MSITFDQFEVFLERHEKRLEQFQMRILEKLTQQMNLNKNGLTDVSAKSHADCIIDSIHEFHFDGVAGVTFESWYKKYEDV
FNVDPETFDDAAKVRVLLRKLGTIEHERYTNYILPKNPRDISFEETVKILSQIFGEQSSLFNIRYQCLKIVKAGNDDWVQ
HASIINRECERFKLSAMTEDQFKCLVFVCSLQSSEDADIRTRILSKIEQCPNITLQEVTTECQHLVNLKHDTSMVESNGR
LPYVQSVSGKQKQNTTIKKPPSACWFCGELHYKRFCPYKNYRCTRCQLKGHKETCCKKKMHRRSSSVHYRRRKNCSSTNK
IMVAHTSTEHNRRKYVTLEINGRRARLQLDTASDISLISRKTWSHIGKPLVLPTAQLAHSASGGKLNIAGEICCPVKKGN
VQKNVKVYLTESPGLDLLGLDLIETLKLADHSINSICRRVTIDNSSRCNQKSTVPQRHHNVFKEELGECTKAKALLILKP
GATPVFRPKRPVPYAALPMVEQEIERLQKLGVIEPVNFSEWTAPIVVVKKTNGSIRLCADYSTGLNEALGTHQYPLPLPE
DPFAKLNGGKLFAKLDLSEAYLQIPVADECKNLLTINTHKGLFRYNRLPFGVKTAPSIFQQVMDTMLQDVPGAAAYLDDI
IIMGVDKIDLEKKLDQVLSRIAEYGFRLRAEKCNFCMKKVSYLGFIIDQDGRRPBPENTQAVKTMPRPTDVPTLRSFLGL
VSHYGAFIPNLHHLRAPLNNLLAKNVKWDWSADCQAAFEEIKKILVSDLLLTHYDPSLPIVVASDASNHGIGAVISHIMP
DGSEKAISHAARSLTTAERSYSQIEKEALSIIFAIKRFHKMIFGRQFTLLTDHKPLLAIFGSKKGIPVYTANRLQRWGTT
LLGYDFKIKYQPTTDFGQADALSRLIGSRVKHEEDTLVAAIETEAEVHRVLEDAVDGLPVTLKAIKEATINDKTLREVSG
YLLTRWPNRRFQSEMLQYFRRRDSLMMVDSCIMFGDRIVVPKTLRHRVLKQFHSGHPGINKMKALARSYAYWPSMDHDIE
QKCRSCSSCLEAAKNPNKAEPQPWPKPDGPWQRIHADFAGPIQGRNYLVVVDAFTKWPEVYDMPKMTSESTIRKLTGLFA
CFGVPEILVTDNGTQFMSSVFKQFCTENGISYLQSPPYHPQSNGQAERFVDTIKRALVKGGGEAIPEQVISKFLLSYRVT
PNPAVPEGKSPTECMFGRKIRTIFSSMLPPRKTRKPTNGNHMVTRSFKVGERVLVKSYQGGKRWEPGIIERRIGSVLYLI
RRNVGTCIRHINQIRRDGRTWMPQSRLPFHLLMDSSPKCTQAHEGRKDKRRKSKATQPSRVMSRKRTAVTQFQVDPR
>MDG1_pol#LTR/Gypsy 2545-6231 [Drosophila fruit fly genus]
NKSCPQCPKHTIGKRTYPLERQSTIKLYKINLNLSIFIRLKNMSTNSWVTLLIDTGAEISLLKCRNNNLNDLNPKNTTNI
SGIGQGTIQSLGTLHLEMCIANAAIPYEFHIVPNNFPIPGDGIIGLDFIKKYNCILEFHDQEDWFTLRPKNFRNINIPII
HTLDNEIILPARSEVIRKIQLTSTDTHVLIPNQELQPSIIIASALVNTQNVLIRIINTTEKDAIVSSANIKSESLDDYDV
YNANIENSAQRTSEVLKLLKFPSLFKSDLTKLCTEYSDIFGLETETISANNFYKQKLRLNDKTPVYIKNYRMPESQKPEI
QRQVDKLIKDGIVEQSISEYNSPLLLVPKKSLPNSEEKRWRLVVDYRQINKKLLADKFPLPRIEDILDQLGRAKYFSCLD
LMSGFHQIELDERSRNITSFSTSTGAYRYTRLPFGLKIAPNSFQRMMTLAFSGLTPSQAFLYMDDLVVIGCSEKHMLKNL
TDVFKLCRQHNLKLHPEKCTFFMKEVTYLGHKCTDKGILPDDSKYEVIKNYPKPVNADEARRFVAFCNYYRRFIKNFSEK
SRHLTRLCKKNVPFEWTSECNDVFEYLKRKLMKPTLLQYPDFSKQFCITTDASKQACGAVLSQDHNGQQLPVAYASRSFT
KGESNKSTTEQELAAIHWAINHFRPYVYGRHFLVQSDHRPLSYLFSMRNPSSKLTRMRLDLEEFEFTVEYLKGKDNHVAD
ALFRITIGELKAINRQILKVTTRSTTRQKNTCAGEKLHEPNEKENIKMPNIYQVINNIDAKKYVILKIDKHKCLLKRGKQ
IITRFDMTNFYSNEIIDLDQFFQRLNEEARINSIIQTQLSPSEQIFEFVTIKNFKEKGNKILKNLKIALLNKVTKIDKND
KVQIKAILSKYHDDPSEGGHSGISRTLRKMKNCCCWPRMTKAISEYVETCLKCQQAKTTKHTKTPLTITETPATAFDKVL
IDTIGPLPRSENGNEYAVTIICDLTKYLVTVPIPNKSAKSVAKAIFENFILKYGPMKTITTDMGTEYKNQIIDDLCKYMK
IKNITSTAHHHQTLGTVERSHRTFNEYVRSYISVDKTDWDIWIQYFTYCFNTTPSVVHEYCPYELVFGRLPRQFIDFNRI
DRIDPIYNMDDYSKEVKLRLEIAYRRAKNMLDKAKADRKIKYDRNISNFELKIGDKILLKNETGHKLDNNYLGPYLVSEI
GDNDNITIIGNKNKKQIVHKDRLKIFNS
>Invader3#LTR/Gypsy 26-4747 [Drosophila fruit fly genus]
MPDTKWNQFSVPQLKKWLEALGCQTSGTKAELIVRLQAISPETRGDSPPNNGSAAEELEELDGDAAWPKQREPQGGDTRT
IPFDEQSLQSEPPENLDLDQLSLVDAERATLKELRDEIEANMAVLQRIQADIDDANKSKSAHVRQINDVIENNSNGNHGN
VNICANSTDANVNSTKVTIAADNIDTGHTSFGKETAGSVVQHQSRNVNKLLESPATSLALAKEVTMEFDGSLCARNWVTQ
FQNIGKIYNLDDGCMHMLLIAKLKGNAQRWLHASATRILESTDQLCEQLILTFEIKMSKGELRSAFQKREWHPDEKFAVY
FEDKVMLANDINIDLEELLENIIEGIPAPALRNQARIQRFSEPMQILRAFSEVRLPKHKTGSSSSKRLTGGGAANKDLRC
ANCNSKGHFARECLKPKREPGSCYGCGAFGHFVGQCPERKSANINNYVRLVKIFFHNNYKTPLITECLIDTGSPISFTKL
SSVSKEINLESASGTYFGLNKSQLTLHGKSLCYIIKEKVKCYFYLYVVPDESMSHNVVLGRNFMEACQLKLDPDALGRIT
VNPVDSKRYKKANSKTISSIVSETVSETVSETVSETVSETVSETVSETVSQMDNETVNKTISKTANEASSIVSQTVNEAG
SKTVIETVMPLANFTTDSGPYAAVVPSYEEAVREICSIEHLEDEQMNFICGENNNQALNSQLKEIIKRNYLSVNKPTEPL
VKCEIKLCLETSKPFSCAPRRLAYSEKEKLQKLLDDYLKEGIIQPSVSEYASPIVLVKKKTGDIRLCIDFRKLNKVLIKD
NYPIPLIDDLLDKLVNKKVFSKLDLRNGYFHVFVNKESVKYTSFVTPLGQFEFLRMPMGLKTASAVFQRFVNKIFEDLIR
DNKVIVYMDDIMIASKNSEEHLETLKEVFIRLAQNKLELRMDKCEFLQTNIKYLGFIINGEGIRADDKGIDAIQHFPVPD
KIQAVQSFLGLCSYFRRFIKDFSTLAKPLYDLLRKDEKFKFGEKEMSCFSTLKEKLVQAPVLAIYNFKDEIELHCDASAL
GFGAVLCQKKEDGKLHPIFYFSKRTTVAEAKYHSFELETMAIIHALRRFRIYLYGKRFKIITDCNSLTLTLNKTELNPRI
ARWALELQNYDYELIHREGKRMQHVDALSRCTNILIVESNTFEDNLVICQGKDQKVQEIKKLLEKNEHKLFEMRNGIIYR
KCNDGRLLFYVPTDMEDHILYKYHNEIGHIGRDKMLDVISKSYWFPNAKDKCLSHIENCLKCVAFSPKTGKEGFLHCIPK
GSKPFELIHIDHYGPVDSGRSKKHIFVVIDGFTKFVRLYATKTTNTKEVITALKDYFRAYSKPKCIISDRGSCFTSKEFD
DFMLEFDVKHMKIATGSPQANGQVERVNRSLGPMIAKLVQPEKGIYWDTVIDKVEHVLNNTQHRSIKQTPSRVLFGLEQR
GKIVDELKEKLEELENTEEDRDLVKIRNEVENNQKKAQAYNKTHYDKTARQPSEYKKGDYVMVKNFDSTAGISRKLIPKC
KGPYVISKVLRNDRFLLKDVEGFQISRNPYQGVWSIQNIKHWIGNKKNKRRHN
>Gypsy_MT_gag#LTR/Gypsy 2436-5696 [Medicago truncatula]
MEEENAQLRTELATLREELAKANDVMTALLAAQEQSATAIPTTTAAPVTTSVLPTTSADTRFAMPVGFPYGLPPFFTPST
AAGTSSTANNVLISATNAASINATLPQTTAAVTEPLVHTLPQGVNINTQHGSIPVTKTMEEMMEELAKELRHEIKANRGN
ADFFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKNDI
HTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIA
APNNFSEMVTMGTRLEEAVRDGIIVFEKAESSTSASKRYGNGHHKKKETEVGMMSAGAGQSMATVAPINAAQMPPSYPYM
PYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQQQQQQQYTRPTFPPIPMLYAELLPTLLQRGHCTTRQ
GKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHAAVNMIEVCEEAPRL
DVRNVATPLVPLHIKLCKASLFSHDHAKCLGCLRDPLGCHAVQDDIQSLMDDNLLTVSDVCVVVPVFHDPPVKSVPLKKC
AEPLVIRLPGPIPYVSDKAVPYKYNATMIENGVEVPLASFATVSNIAEGTSAALRSGKVRPPLFQKKVATPITPQVEEAT
PTVVSPIATDMNQPGKSIEDSNLDEILRIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAHRNTLLKVLEQAYVDHEVTVD
RFGGIVGNITACNNLWFSEEELPEVGKSHNLALHISVNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYHGTPLRRSTFLV
KAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGEEAYLV
SQLSSFSCIEAGSAEGTAFQGLTIEGAEPKKAGAAMASLKDAQKVIQEGQTAGWGKVIQLCENKRKEGLGFSPSSRVSSG
VFHSAGFVNAVSEEATGSGLRPAFVTPGGIARDWDAIDIPSIMHVSE
>Invader5#LTR/Gypsy 97-849 [Drosophila fruit fly genus]
MQRTQRVPNDAVAVVLPKFNPDRTGSDGASWCSTVDYILSENQLHGTFLVMAFSKALEGSVSHWLSQTCFPGITWMQFRE
LFLQNYAGTETLAATVINLLDGRPKEGECLSLYGSRMVTSLVSRWKSLDVEQIAVSVVLAHAAGFNKRLRRLAFTTDVNT
RNDLHQELTAYSFDARQSQSSYGTTSAPSAKRVKTFSSGKLGHKQAECRLKKEATQSHHSAGQRSGYTESKRRSTLTCFK
SGKVGHVASV
>MARY1_TM_gagpol#LTR/Gypsy 106-4154 via tfasty with Gypsy2_ST, 1 frameshift and 7 stopcodons. Trimmed 4 AA to first M. (notice: repbase enry has 2400 bp 94% similar duplication within Mary1 that was removed for this translation; the duplication may be real, but makes the translation fail) [Tricholoma matsutake]
MRQTPARFVGACRCxGSKGSSCRGDxVGSCRGAGFSYSQRVNRTPSLPVHNHFEVLSVESLENESISVTAPLSDPSKLAK
DVPALPISPSTPRPKIKSWERKLPRKYIVASTPSAHSLNLAIKLQTTDTGQILGVSALLDSGVTGLFIDSHLVQQHRLNT
RSLSRPIPVYNMDGSPNEAGAIxEVADLVLRYKDHSECALFAVTQLGKQKVILGYPWLRDHNPEVNWHTGEVTMSQCPSR
CRTCFTEARQEHCGQKAAIRCTQKCHAGPLPIPEVELEGVPDLMPDSDDDDEDPEEVEEGDWIFYTAIHSSHEVCATSNI
SQHLTEAFHKNNAAKSSTNSLLPHLHEFEDVFSKESFDSLPARKPWDHTIELTPGATPSSCKVYPLSPEEQWQLDQFIDE
HLASGCIQPSKSPMASPFFFVKNKDGSLQLVQDYRRLNNITVKNCYPLPLIPLAPKTQGYTPTPALPYLSSLNLxMSSME
AKYFTKLNVHWGYNNVRIKEGDEWKAAFCTNRGLFEPLVMFFGLTNSSATFQTMMNDIFHDLILEGVVCIYLDDILIFTR
MVEEHHHITRLVLExLxQYKLYLRQDKCEFERTKIEYLGLIISGGQVEMDPIKVNGVTAWLTPTNKKEVQSFLGFINFYQ
HFIKDFSHHARPLFDLTGKEAWRWDNAQQEAFEKLKEMVTSAPILTFADDLRPFCVEANSSDFATGTVLSQQSPEDQKWH
PVAFYSKSLSAVERNYEIHDKEMLAIMRVLEEWxHFLEGAQHKVEIWTDHKNLEYFMTAKKLNHRQARWSLYLSRFDFSL
HHCPGCSMGKTDALSRCADHGDGSGDNQNIVLLQPDLFTIRALEGIAPQGKERDILRDIHRTNRSGLHEDVVARAVKELR
KGSTLSLRAAEWAEKEDLLYFRDRIYIPNDPDLRQRIISQHHDSQIAGHPGCWKTLELTSRNYWWPQMSWLIGQYCCTCD
RCLCTKVPHRKPIGELHPLPVPESRWDVVSVDFVVELPESNGFDAVMCTVDSVGKCAHFIPTHTTVSALGATRLYLHHVW
KLHGLPGAFLSDRGPQFMAEFTRELYRLLGIKLLTSTAYHPQTDGQTEQVNQELEQYICLFVNECQDNWDDLLPLAKFGY
NNHVHASTQQTPFLLDTGRHPHMGFEPCQTPSHIETVNEFTERMRDSLEEARAALAKAKDDMAQFYNQCHSPTPQYKVGD
RVYLDSSDISTTRPSKKLAHRFLGPFPIVKCIGTHAYRLCLPASMSRLHPVFHVVKLLPAPPDLFPGHHSHPPPPPTVIE
GEPQYEVESILDSHLRRGKLQYLVHWKGYGYEENSWVEESDVNAPWLIKEFHRRHTAAPHRIQVTDFGHM
>MAGGY_pol#LTR/Gypsy 1322-5104 [Magnaporthe grisea]
KPPPRLGRQPLQQPKFEKRSPPGISRPQAAKAAHRPPAIRISAAAVHGFPVEEEYNQRSDLMILPAELTVGGQNLPTYAL
TDCGAEGKCFLDQGWAEERQLQMYPLRNPFDIEVFDGRTAESGKCTHYVRGQLRIKDHIQKNALFFVTQLAHYPIVLGMP
WLKQHDPTIGFASHVITFDSDYCRRHCNMPDKPEKVKALHAVPKKSRPQYQADRPPSLREMDIAPISLQAASMYARRRSC
RLYAVTLKQIDEVLAADPQNRNGPTLPETIREFADVFSPQEAEKLPPHRPSDHHIPLIEGKTPPFGPLYAMSREELIALK
EWLTAELKKGFIRPSSSSVASPVLFVKKQGGGLRFCVDYRALNNITVKDRYPLPLVRETLNNLAGMKFFSKIDIVSAFNN
IRIKKGEEYLTAFRTRFGLYESLVMPFGLTGAPATFQRYINDSLREYLDVFCTAYLDDILIYSRTRTEHEEHLKLVLEAL
RKAGLYANAAKCEFFVTETKFLGLLVGVEGVKMDPEKITAVLDWQTPKKLTDVQAFLGFGNFYRRFIRDFSKIVAPLTRL
TKKDVAFEWNSACETAFRLLKRKFTEAPVLAHFDWEKDVILETDASDYVSAGILSQYGDDGILRPVAFFSKKHTATECNY
EIYDKELLAIIRCFEEWRPELEGTSSPVQIITDHRNLEYFTTTKMLNRRQARWAEFLSRFNFRITYRPGKQGAKPDALTR
RSEDMPEEGDERLKHQTQVVLKEHNLPARPTRLQPIIRQNKPLLPRHLIELLDAGYESDPITQSALEALRTGADRHPKLQ
LAECEERSGYLYYRNRLYVPDSNNLKAEILRRCHDSPVAGHPGKAKTYDLLSREYYWPGMLHYVSLWVKKCQTCRRINPS
REGHQGLLRPLPTPERSWQHLSMDFITHLPQSNGHDAILVVVDRLTKMRHFVPCKGTCNAEDTANLYLHHVWKLHGLPLT
IVSDRGTQFVSKFWKHLTTRLKIDSLLSTAHHPETDGQTERFNASLEQYLRAYVAYLQDDWESWLPLAEFTANSHKSETT
GTSPFYATYGFHPRMGFEPVPLNQPLPAQRDAEKLAARMEAILEQARAEMTAAQARYEEQANRHRTPARRLTVGQYVWLD
ARNIQTARPQKKLDWKNLGPFRISEVISPYAYRLDLPSSMRVHPVFNINRLKPADVEPLPGQQPAPPPHLEVEGEREYEV
EEILDSFWETRGRGGRRLKYIVRWAGYSEPTTEPADYLENAAQLVKNFHRRYPHKPGPRP
>GB:CAA56859 planarian mariner-3 gene (Mariner_Tc1-element) [Girardia tigrina]
MEISEIRILMKYEFHRGATTRQAVGNINSVYPTQAVTQTTVAHWFKRFRSGDFDLSNQPRGRPEIKVDNDALKADVEADS
SQSALELASKFGVAKSTILIHLKQINKVKKLDKWVPHELKDEHKQQRLDACLSLLSRNKADPFLHRIVTCDEKWIMYDNR
KRSSQWLDPDEPPKHCPKRKVHQKKLMVTVWWSSYGVIHYDFMVPGTSITSDVYCSQLDDMMEKLAIKQPKMFNRLTPIL
LHDNARPHSAKNTVAKLQQLGLETLRHPTYSPDLAPTDCHFFQSLDNFLSGKNFTSSGAVKTAFQEFIDSRESVFYTKGL
NVLPLKWQQCVDNMGGYFD
>Q9WXQ4_THEMA/302-368 transposon family T35 Pfam:PF07282
FRKLMSQIEYKAQIFGIEVVRISEAHTSKTCPVCGTQNRPSGRNYKCAGCGFEYHRDGVGAINIWKR
>Q9UYW1_PYRAB/257-329 transposon family T35 Pfam:PF07282
MNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNLLGL
>Q8YWC9_ANASP/289-354 transposon family T35 Pfam:PF07282
HGETRAFLTYKSQRLGMKVEIQCERYSSQVCPSCGQRHKPKNRTYKCKCGFEFHRDGVGCVNIRRK
>O80301_BPIF1/249-318 transposon family T35 Pfam:PF07282
WYEMRRQLEYKQLWRGGQVLAVPPAYTSQRCACCGHTAKENRLSQSQFRCQVCGYTANADVNGARNILAA
>Q96XP8_SULTO/295-367 transposon family T35 Pfam:PF07282
FSSTKNAIMEKAKEFGVPIILVDPAYTSSTCPVHGSKIIYRPDGGSAPRVGVCVVGKERWHRDVVSLYNLMRR
>Y4HO_RHISN/6-114 transposon family T34 Pfam:PF05717
QNVRVWIATGHTDMRCGFPSLALRVQEVLKLNPLDGNLFVFRGRSGSLLKVIWSDGQGSCLFTKRLDRGRFVWPSAEGGA
IAISPAQLSYLLSGIDWRHPQETWRPTKV
>Y4QJ_RHISN/143-333 transposon family T32 Pfam:PF04986
GFFAVLHTWGQNLLHHPHLHCVVPGGGFSPDGTQWIACKPGFFLPVRVLSRLFRRLFLEHLEKAFDGGKLQFFSDLRALN
ERNAFRRYLAPLRKAEWVVFAKPPFAGPEQVLDYVGRYTHRVAISNNRLVDIEDGAVRFRWKDYRHGDRQKVMTVSTDEF
IRRFLLHVLPEGFHRIRYYGFLGNRYREQKL
>YQCG_BACSU/1-248 transposon family T30 Pfam:PF04740
MKVFEAKTLLTEAEKRAQEYKDLKSKMVKLKKAFKAVADLDDSEFSGKGANNIKSFYEDQAGIADQWIDLIEMKISFLTS
IPGFLEDANLSDAYIEETFLAHELANAYTKSKSIMSEQKKAMKDILNDINDILPLDLFSTETFKNELSSAEKKRKEAIEK
MDEVDQNLTSEYGLSEANEQMIQADYQALMNATAKGKSASPIHYNAKAYRDSEIHKMTEDVKKQSTDYISFKDQQAEQRR
IAKEQEEL
>T801_PSESH/155-339 transposon family T32 Pfam:PF04986
GIFGALHTYGRRLNWHPHVHLSVTAGGLDEQGVWKNLSFHKEALRRRWMWLVRDYLLGQPLSQLTMPPPLAHILCESDWR
RLILAAGGQHWHIHLSKKTKNGRKTVNYLGRYLKKPPISGSRLAHYTNGATLRFTYLDHRTQAYQQETLSQADMLFRVVQ
HIPEKHFRMIRYFGFLANRVCGQYL
>Q9ADT3_SALET/163-390 transposon family T32 Pfam:PF04986
GAVTLIQRFGSALNLNIHFHMLWLDGVYVEATELPRRELRLHRARAPTTAQLTQLAATIAHRVCRHLTRKGWLEGEGESA
FLADSAAGDDSMDGLRMSSITYRIATGRDAGCKVVTLQTLPGDAGSLEGEAGKVGGFSLHAGVAAEAHESHKLEKLCRYI
TRPAISEKRLSIALQGRVRYQLKTPWRNGTTHVEWDPVDFIAKLAALVPPPRAHLTRFHGVFAPNANL
>O52215_PSEPS/174-369 transposon family T32 Pfam:PF04986
GAIAFIHRFGSSLNEHVHFHVCVVDGVFEEVEGEGDADATPRISSPGVIFHAATGIDAATVAPVQTTLQKRILRAFVARG
LLENCDAKDMLGYKHSGFSVDAGVCIEAHDRAALERLLRYCARPPFSMERLRKEGSKLVYRCAKQRSEPTSDKRGAKADE
LHLTPLELIDRIAALVPPPRTHRHRYFGVLAPNSPL
>Q893K9_CLOTE/306-375 transposon family T35 Pfam:PF07282
FNIFINQMKYKCQKYGIEFIQVSTFYPSSKTCSHCGTIKKDLKLSDRTYKCDCGFTCDRDKNASYNLANY
>Q48608_9LACT/1-80 transposon family T8 Pfam:PF01527
MSGFKRYDEDFKQSLVNLYQTGKTQTELCKDYGVSSSALAKWIKQYSQVRLEDNTVLTAKPDFKNYKKGMPARGRKSDLK
>O53033_ENTFC/1-73 transposon family T8 Pfam:PF01527
MTRYEENFKQMIVELNQTGRSVRGLAKEYGLSEATIYKWKNLYLPDQSTGLTGKEVAELRKENARLNEELEIL
>Q7DB05_CAUCR/1-80 transposon family T8 Pfam:PF01527
MKRARFTEEQIIGILRENEAGAKAGELARKHGVSEGTIYAWKAKFGGMSVSEAQRLKALEDENRRLKSLLADAILDKAAL
>Q52956_RHIME/14-104 transposon family T8 Pfam:PF01527
PERRRRWSTAEKLAIIHETYEADATVSIVARRHGIQPNQLFAWRKLASQGALTATAAEEEVVPASEYRALQAQVKELQRL
LGKKTMESEIL
>YI74_BURCE/1-79 transposon family T8 Pfam:PF01527
MKKRFTEQQIIGFLKEAEAGMPVKELCRKHGFSDASFYTWRAKFGGMEVSEARRLKDLEVENARLKKLLAEAMLDMEAL
>TNP5_PSEAE/1-966 transposon family T7 Pfam:PF01526
MPRRLILSATERGTLLALPESQDDLIRYYTFNDSDLSLIRQRRGDANRLGFAVQLCLLRYPGYALGTDSELPEPVILWVA
KQVQTDPASWTKYGERDVTRREHAQELRTYLQLAPFGLSDFRALVRELTELAQQTDKGLLLAGQALESLRQKRRILPALS
VIDRACSEAIARANRRVYRALVEPLTDSHRAKLDELLKLKAGSSITWLTWLRQAPLKPNSRHMLEHIERLKTFQLVDLPE
VLGRHIHQNRLLKLAREGGQMTPKDLGKFEPQRRYATLAAVVLESTATVIDELVDLHDRILVKLFSGAKHKHQQQFQKQG
KAINDKVRLYSKIGQALLEAKEAGSDPYAAIEAVIPWDEFTESVSEAELLARPEGFDHLHLVGENFATLRRYTPALLEVL
ELRAAPAAQGVLAAVQTLREMNADNLRKVPADAPTAFIKPRWKPLVITPEGLDRRFYEICALSELKNALRSGDIWVKGSR
QFRDFDDYLLPAEKFAALKREQALPLAINPNSDQYLEERLQLLDEQLATVARLAKDNELPDAILTESGLKITPLDAAVPD
RAQALIDQTSQLLPRIKITELLMDVDDWTGFSRHFTHLKDGAEAKDRTLLLSAILGDAINLGLTKMAESSPGLTYAKLSW
LQAWHIRDETYSAALAELVNHQYQHAFAAHWGDGTTSSSDGQRFRAGGRGESTGHVNPKYGSEPGRLFYTHISDQYAPFS
TRVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGETKLYVPQGVQTYPTLRPLI
GGTLNIKHVRAHWDDILRLASSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLN
KGEARNSLARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATQGLVEAGKPVDGELLQFLSPLGWEHI
NLTGDY
>Q9FCX3_CLODI/170-241 transposon family T35 Pfam:PF07282
WSEFIRQLEYKANWYGRQIVKVGKFFASSQICNKCGYKNEEVKNLNIREWICPSCNETHDRDINASINILKE
>Q893E8_CLOTE/295-365 transposon family T35 Pfam:PF07282
LYEFKRQLQYKCKFYGIEFVEADIWYPSSKICSECGYKKTKLSLSERTYICEECGAVIDRDFNASINLSRY
>Q8YXQ5_ANASP/292-359 transposon family T35 Pfam:PF07282
WYQFRKWLEFFGVKFGRITVAVNPAYTSQECSNCGAMVKKSLSTRTHACECGFVMDRDWNAAINILKL
>O68711_YERPE/1-745 transposon family T7 Pfam:PF01526
MPVDFLTTEQEQNYGCYVAEPNDVQLVRYFHLDERDLAFIYQRRGKHNRLGIALQLTTARFLGTFITDLTQVLPGVQHFV
AVQLNIRRPEVLSRYAERDTTRREHTAQIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFATAWLLQNKILL
PGATTLVRLVSEIRERANQRLWKKLAAIHYLTELNGTKKRLLDDAPEHIITGPWKRLVYDAEGRIQRAGYSLCLLERLQD
ALRRRDIWLKNSDRWGDLREKLLQGEEWQAQRVLVCRALGHPTDGHKGVQQLAVQLDETWRAVASRFEGNTEVHICNDGK
YPSLTISSLEKLEEPLSLLRLNNRVRQLLPPVDLTELLLEIDARTGFTREFTHVSESGARAQDLHISLCAVLMAEACNIG
LEPLIKHNIPALTRHRLSWMKQNYLQAETLVSANARLVDFQSTLELARRWGGGEVASVDGMRFVTPVKTVNSGPNRKYFG
SGRGITWYNFVSDQYSGFHGIVVPGTLRDSIFVLEGLLEQQTGLNPVEIMTDTAGTSDIIFGLFWLLGYQFSPRLADAGE
AVFWRVDKSANYGALDELARGCADLSKAENQWDEMMRTAGSLKLGTIHASELIRSLLKSSRPSGLAQAIMAVGRVNKTLY
LLNYIDDEDYRRRILTQLNRGESRHAVARAICYGQRGEIRKRYREGQEDQLGALGLVTNAVVLWNTLYMQEALSWMRSNG
EETRDEDIARLSPLMHGHINMLGHY
>Q8GJN4_SYNP7/299-367 transposon family T35 Pfam:PF07282
WTQFTHWLDYYGKLWRKVVVAVNPAYTSQDCSGCGYRVQKSLSTRTHDCPHCGLTICRDQNAALNILKR
>O18589_9CUCU/37-117 transposon family T1 Pfam:PF01359
TYDNRVRKRSWSKSGEAPQTVVKPGLTARKVLLCIWWDWKGIIYYELLPYGQTLNSDLYCQQLYRLKIAIDHKRPELTNR
R
>O02474_STYZE/37-117 transposon family T1 Pfam:PF01359
LYVNVVRKRSWVDKGTPSQAQPKPEIHQKKLMLCVLWDVSGVIYWEMLNPNQTINAELYCTQLQKLVGTISQRRPNLEKI
R
>O18576_9CUCU/37-117 transposon family T1 Pfam:PF01359
VYNNVVRKRSWSRPDSLPQTASKAELHQKKVMLSVWWDYKGIVFFELLPRNQPVNSDVYCRQLDSLNRSLIQKRPELVNR
K
>Q25471_9ACAR/37-117 transposon family T1 Pfam:PF01359
YYDNPGRKRSWVSPGEPAEKSVRRNRFGKKTMLCVWWDQRGVIYHELLKPGETVDTARYQQQLIDLNRAVKEKRPNWDQV
R
>O18584_BITST/37-117 transposon family T1 Pfam:PF01359
YFVNLKRKRSYVDPGQPAQLSPRPNRFGRKTMLCVFWDQRGVIWYELLKPGETVNGQRYQQQLANLNRALRQKRSEYETR
H
>O06525_HELPY/22-127 transposon family T17 Pfam:PF01797
VFVTKYRRKAFNKEVIDFLGSVFAKVCKDFESELVEFDGESDHVHLLINYPPKVSVSKLVNSLKGVSSRLTRQHHFKSVE
ASLWGKHLWSPSYFAGSCGGAPLEMI
>Q8CMC2_OCEIH/150-247 transposon family T12 Pfam:PF01610
AIAIDEFKGDAGGERFQTVIVDVENKHIIDILEDRKVDTIKKYLRSRDTGQVEIVVMDMSKWFKKAVCDVLNHPLIIADR
FHFMRQVYWALDEVRRQV
>Q81ZH9_STRAW/162-256 transposon family T12 Pfam:PF01610
VLGVDEFATRKGHKYGTVLVDCETHAPIDLLPDRESATFAAWLTDHPGVEIICRDRGGAFADGARTGAPDAVQVADLWHL
WHNLAETVKSLVSKH
>Q45144_CORGL/163-275 transposon family T12 Pfam:PF01610
VIGVDEHKWSHNRAKHGDGFVTVIVDMTGHRYDSRCPARLLDVVPGRSADALRSWLGSRGEQFRNQIRIVSMDGFQGYAT
ASKELIPSARRVMDPFHVVRLAGDKLTACRQRL
>Q74LJ9_LACJO/159-257 transposon family T12 Pfam:PF01610
HLAFDEFKGVGKKLHFICLDGDTHKVVQILRTRFKPDILRYFYKFTPKARAMVKTVTMDLNCYYPLVARELFPNAQIVID
RFHMVQMLTRSFNIFRVQI
>Q48350_STAAU/162-263 transposon family T12 Pfam:PF01610
HIAMDEFKSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPYVRLFRDLFPNAAI
IFDRFHIVQHLNRELNKYRVQV
>Q23825_CHRVT/37-117 transposon family T1 Pfam:PF01359
HYDNPKQKRAYVRRGTPAPSQPKQDIHGFKVMLCIWWDQRGVVYYELLKPSETIDGARYRLQLMRLSRALREKRPEYEQR
H
>Q9SIL1_ARATH/688-760 transposon family T23 Pfam:PF03017
KRTQPKCFLLDWAGSYAKVAEGCIISSDPGELVNDCRLGPTDVKVLIDTVIEPEAFLWRPAANMFTIEKAVGH
>Q9XEW2_ORYSA/22-247 transposon family T21 Pfam:PF02992
RMLRWHAEERQQDGMLRHPADGSQWQNIDRKFKEFGMDARNIRFGLSTDGMNPFGEMSSGHSTWPVTMCIYNLPLAMHEE
EVHNDADYYSRPKQPGNDIDVYLRHWLKILNSCGRRKVSPCGTRTNRRRFKLRALLFVTINDWPALNNISGQSNKGYKTC
THYMDETESTYLKHCRKVVKMGHRRFLAANHPVRKKGKHFEHKADHRTEPKHRSGKTVFAMVKDLK
>Q9SKI6_ARATH/277-429 transposon family T24 Pfam:PF03004
RDKLWARMWEHWNTKDAIERSENASQCRNSTRGGLGVHKHVAGQKSFLQVHQEMEERLKRPVTFGEVFIATHTRADGSFV
DQKSQQVGEAYARSLEERMSEIDRDGPQISDNSSQHSTQRTLSLEEKNEIFLKCTHKDGKGNPYGLGSLVETL
>YSNA_STRPR/10-282 transposon family T2 Pfam:PF01385
KYRFYPTDEQAAELSRTFGCVRLVYNKALEGRTRAWYGEQRRVSYVQSSAALTEWKKTEELAFLSEVSSVPLQQALRHLQ
TAFANFFAKRSKYPRYKSRKKSRASAEYTRSAFTWRNGQLTLAKTAEPLDIRWSRPLPEGAEPTTVTVSRDRAGRWFVSL
LCEDTITPAPATTAAVGIDAGITSLVTLSTGEKITNPKHERRDRARLAKAQRDVSRKAKGSANRKKARRKVARVHARITD
RRCDFLHKLSTRLVRENQTVVIEDLTVRNLLKN
>Q9SK17_ARATH/20-153 transposon family T24 Pfam:PF03004
DSYIWKAMCEYWDTEEAIARSHIYSKARLSDRNGLGPHIHLCCIKPCSFLTSQEKELGRTMVLMSTKRQSRLLKIMRRSC
KKLSEMETETSNVSDGESRPREFRIDDHTVIFLEATETNSRGNYYVVGSLKDNL
>Y4RJ_RHISN/265-349 transposon family T20 Pfam:PF02371
AMLLALKGIGPEFAAVLWSEGLSRHFDNRRQVAAYAGLAPTPWQSGSVDHDQGVSKAGNPRLRTTLIQGAWLWLRHQPHS
ALSLW
>O18579_9CUCU/37-117 transposon family T1 Pfam:PF01359
QYDNRKRSAQWLDKDESPKHAPKRGIHQKKLMVSVWWSSAGVVHYEFMKPGSSITAEVYCRQLDQMMQKIKEKQPRLVNR
S
>P91734_9CNID/37-117 transposon family T1 Pfam:PF01359
YFDNPVRTTHYVDPGAPVKPTPKRNIHGNKALLSIWWDQIGVVYYELLKPKETIDGPLYRLQLFRLRKALEEKRPEYAER
H
>YIS1_STRCO/274-358 transposon family T20 Pfam:PF02371
PVLTSMPGVGVRTAAVLLVTVGDGTSFPTAAHLASYAGLAPTTKSSGTSIHGEHAPRGGNRQLKRAMFLSAFACMNADPA
SRTYY
>O50244_9RHIZ/224-307 transposon family T20 Pfam:PF02371
DALRSLHGVNTIIAATLAAEIGDINRFDNPRQLMAWLGLVPSEHSSGSTVRRGRITKTGNALARTMMVEASCRIDTHLEK
DILF
>YI90_MYCPA/270-355 transposon family T20 Pfam:PF02371
EIILSMPGFGVILGAEFLAATGGDMAAFASADRLAGVAGLAPVPRDSGRISGNLKRPRRYDRRLLRACYLSALVSIRTDP
SSRTYY
>EnSpm-1_NV#DNA/CMC-EnSpm 4407-6791 [Nematostella vectensis]
MWKRSDVSCCNCTEKKYRHVHCPCATCNGRATDRKTEIRHWKEANRAASRSSQRQCSTSAAQDSESFVFEVEDSDSEIEA
DNFTIEDNLLPNPDTPDTDETDTDDQDLNADNDNDIDNTNHDANSRHYNPLKRLVVDAVLNALKIQKESGMSIKTFEDIL
EFGKRLLLDSSSEQVFFDRDILTTLWPKSWSDVQALLKEEGYQDAREYFICFCYKTRPINSDTRIKYTGKYSLMTSKDEV
CSNCGNKGVIAYYYLGLQNKVKNWFRDENMCNKMLSHWNEREHWLGVEQSWPIKKEMWDGERWNELQWFWDPNKTWVIPC
RCEHCGIPIPAKHLIESQDAVTAGKKLVECPECLESFEHSLKTTNGSPINIALIGHWDGWQAFSSSTRSCGSLEVSIANM
KKADRSHTSEVYVVGFVPLSSTPKLPETYDPFLQPLMEDICEGFINGFEVRLPQEPNMKRVRVLLLCWSGDHPGQCEVGK
LLNQGKCACRRCKLVGQHLPMNESNNHMYYGDNRIHYRHKWESRDISLMLTDLYDVEAESRISVRKRMSSEKGVTGISLL
HKYLYPLYNFDILKDLTFDVFHTVCLNVVKSQAERILDHELVDKKSLDREIKNFPWPRELKCGRLPKSIQSYNGSLGQWK
AEGLQKFSFPMADCVLDSKLESPKEQEIQHLISRLTELHFNSGRYGWTNSMIGAHHRLAWRLNILIEETQGLEMCTISVH
NLLHIHEDIIRFSATDNYWCAVFERAVKGYTKTASNCRGVEKTFALAESRREFLKPYSTQEIGEQGKINMKVVS
>EnSpm8_SB#DNA/CMC-EnSpm 2316-5869 via genewise with EnSpm2_OS_p1, 3 introns (4577:4664, 4953:5031, 5130:5210) Maybe connected to p2-like exons around 6574-6816 and 8977-9213 [Sorghum bicolor]
MDKTWINSDARHTKAYLQGVNSFLAFAFRNSAVGDKILCPCRKCVNSFWRDSSDIREHLICDGFLKGYTTWNLHGEASSS
YVNTDNGDGVDPVEESSEEDDISELLRDLACGLDDRGDFEDNSSVELPEELVDLQKLVEANSQELFPNCKKYTKLRFLIR
LLHIKLLGGWTDKSFDLxLDLFNDVLPEGSTLPKNYYEAKKLIKSIGLGYISIHACENDCILYWKDHEKSESCPKCKASR
WKSARKSLDGKHVYKVPKKVLRYFPIKKRLQRLFLCSKTASLTRWHDEERTRDGVLRHPADSPLWKDFDLKHPEFAKDSx
NIRLAFATDGFNPYRTQSISYSIWPGICIPYNFPPSMCMKQSNFILSLLIPGKHAPGSDMDVYLQPLVDDLVDMFVKGVR
TYDASKGEYFQLRAAVLWTITDFPGLGYASGCVTAGEAACPDCHSYTCSHRLGNGSKTCYMGHRRFLDEKHPFRFDVHKF
GSTEFRQAPTPLSGEEVLECTKDIVTVFGKDPTRKKPARKKRKVGEPLVIFKRRSIWFKLPYWKDLMLRHNFDVMHIGKN
VCENFVNTFLGTDGKSKDNLNSRLDLQALGIRSDLHPVDVEDQFYLPPAPYSMSPxEKKLFCQVLKGVKFPAGYASDIRH
NVHVNERKVFGLKSHECHIILQHLLPLAVRKVLPEVVSAAVIRVSHFFKKICAPVFRKSDMDSLEAEIAETLSLLETIFL
PSFFDIMVHLMVHLPAQARLAGPVHFRSMWPVERFLMRLKGDVRTKSHPEGSIMEGSMFYESLTLCAHYLHSRALRNVEG
LQDENSTTPFFDSIGRGLAGKCTVSLDHKTWLQAHRYVLFNYENIGPYLDMLTIYHQLVFETNELSTECNHECFHEWFRS
HVKMCEEVPDEIQILAKAPIMSAQKYSSYTINGFDFHTESYDVGRSVQNSGVALVAESTCFERGDNDNVIIGNKTYYGII
KEIVELNYNHRGNVVLFKCDWVDNRVRGKWVKTDQFGVTTVNFKHLFNTGEKISDEPFILASQAVQVFYVPEHAGSEWVS
VHQSKPRDFYDMDNLESEHLDNGNGLVLPLPDLNAKVTVDVINGVVPTIRTDIDGIIVEPKK
>EnSpm-1_TM_p2#DNA/CMC-EnSpm 9307-11035 via tfasty with CACTA_LP_p2, 6 frameshifts and 1 stopcodon. [Triticum monococcum]
MMRSCSLTITNFLTKLFSYLERNMAHNDETGSSGGKAFWELSREMEEEPHHYEDSAEDTDPDYTTPSGVGDHTTNGAAED
ATTDDGSQPKRQWKDRRPNVLRTVKEEFTEVNSDGHPTAPKEIVKGYSVQLGCILQSTISINTVNLRHKDRGNLRNLLFT
KLHERYKFPAAFENTCLLGNKVNSAALTTMSTTLSTWKSTVKRMIDKGDSYEKIKAKNPSISEDDYKEFKIRCESSATSE
SSQWGKEMRELNLGEHKLGPGGYRVAEPIWDKEDAERAEQGLPPCFEKYRDKQTRNYVRARYKEDPVTKELTTDPKTRAL
ELVLxGIHPPRNxAPYGCILINEAKFLNGSHSFRSETESSSAGSSQSTPWDNTLNRALNVMKHKDKLSKPSSAGRVAGNG
LSTKWSSYYNAGGRKERKTSSESQSREVQELKAQVARIPEIVQEQLQQQLGLTLTAIVPTLIQGLTTWIAGGQQGPPTVP
SFTANNSHNAQAAPLVSPAEAVLVSLTPAGPLELNAPWCMPAGTLAASGPSVSCTPAVGGASTLAELDAITVTTxASRPM
TSISLPLTGPSLTPYMF
>EnSpm-3_VV_p1#DNA/CMC-EnSpm 4947-7415 (may have more exons) [Vitis vinifera]
MDRSWISKDRRSKEYEDGVERFITFAIQNSANKNSIKCPCLQCGNMIFHTPQKIREHMFFHGIDQSYHTWYWHGEVAPSG
PPTTRAEHYDRVQFDDVHSTIEMVQAAQEDCKNDPESFQRLLKDAEKPLYPGCRNFTKLSALIKLYNLKARFGWSDKSFS
ELLEMLGNMLPVNNELPLSMYEAKKTLNTLGMEYEKIHACPNDCILYRNELKDASSCPTCGTSRWKTDKTGTKKRKGVPT
KVMWYFPPVPRFRRMFQSLKIAKELIWHAEERDFDGKMRHPSDSPSWKLVDHRWPEFSSEPRNLRLAISADGINPHSSLS
SKHSCWPVLMIIYNLPPWLCMKRKFMMLSLLISGPRQPGNDIDIYLAPLIEDLKTLWEVGVQAYDAHQREFFTLRVVLLW
TISDFPAYGNLSGCTVKGYFGCPICGEETYSRRLKHGKKNSYTGHRRFLPCNHPFRKQKKAFDGEQEFRPPPQILSGEEI
LRKINVICNSWGKKKFNRGKSKVSNPNCWKKKSIFFDLEYWKYLHVRHNLDVMHIEKNVCESIIGTLLNIPGKTNDGLNC
RLDLVDMGLRSELAPKFESKRTYLPPACYSLSKMEXKVFCQTLSQLKVPYGYCSNLRNLVSMEDLKLYGLKSHDYHTLMQ
QLLPVSLRSILPKHVRNAICRLSSFFNALCSKVVDVPTLDELQNEVVVTLCLFEKYFPPSFFDIMVHLTVHLVREVRLCG
PVYLRWMYPFERFMKVLKGYVRNRNRPEGCIVECYIAEEGIEFCTEYLSNVEAIGIPSTSNIDQKVGASIFGGHTMKVDS
NLWLQAHHYVLENTTIIQPYVE
>EnSpm-3_PGr#DNA/CMC-EnSpm 6781-9831 via genewise with EnSpm-4_PGr, 1 intron (7037:7753), 1 intron [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
MLQAAKMSLIDRVSDKKVSEFLKTEGKKxNQLAEEFGFSASRIISHIPLSKAKLMQQLGFDVTLEEEICCPECFKLYPIP
EIPKNCTSIFYSESKKYLKTIGNEVKFCDTKLMDIEGAGKKTKIYPTRTFSFQKLKNWLAQKLWLPGFELLLDSNLKNEN
TTDGTMKDVWDGSVWKTLVGPANSNGIYTSKSGNLVFSPYVDWLNPYGNKSGGKSVSLGAVALVCLNLPLAERYKIENMF
LFGVIPGPTEPKSDQMNHVLEPLISEMKEFWRGVWFTKTHQFPQGRLIFAAIFPLIGDLQAIRKTGGFSSHAATQFCSFx
EINLQDINIIEINQFTKKTHEAHMERVQRWEGSDSFHEREKIAKLEGARGSILNELPYWRSAEHCGIEVMHNLLLGNRKD
HSFNILKTYQAGNDLKKRVELETKWKKKDSGKELFKGLKFPEIKRKKTPDGDSSGTEDEGMGGGKRRLLSSKNLSRLSRI
EEDPTGPSTHNYGLRGDSSSRGTRSATRSAPGSTISLDSKSSNPTVRRYELRRRSPISTSSLGSGYQFEDEPEEPHQTDE
VPETEDLEREGITVEMEEGPTDEPRMKKEELRALQNVISQTKIPTWVSRVPHNFGMAGAGSLKAADWLILYTVYYPLAIV
PYWVIGDDKQKENTTGSKTVTHQDVLRDSLIKLIEIKNILMKHQLNESDITNYSKLIVEYRQTLRTGWPKQDTKENLHLS
QHYPVVIERLGPPMATAAWPQERLNGMLGKIPNNHHMGMFLRSIFVSVLFFXIGXEG
>EnSpm4_OS_p1#DNA/CMC-EnSpm 597-3881 [Oryza sativa]
MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHAHLIMNGFMKKYTCWTKHGEQ
EAPDVAAEEVLDQDVENTAAAREGMFVPSPLGGETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKS
KHSKLSCVLELMKLKASNGWSDKSFTELLELLKDLLPEGNNLPQTTYEAKQVLCPLGLEVRRIHACPNDCILYYKEYADL
DVCPICGASRYKRAKSEGEGSKSKRGGPAKVVWYLPIAERMKRMFANKEQAKLVRWHAEERKVDTMLRHPADSVQWRTID
RIYQEFSNDPRNMRFAMCTDGINPFGDLSSRHSTWPVLLVNYNLPPWLCFKRKYIMLAMLIQGPRQPGNDIDVFLEPIID
DFERLWNEGTRTWDAYAQEYFNLHAMLFCTINDYPALGNLSGQTVKGKWACSECMEETRSKWLKHSHKTVYMGHRRFLPR
YHPYRNMRKNFNGHRDTAGPPTELTGTEVHNLVMGITNEFGKKRKVGKRKEKSTSKEKTEEHVEKQKTKERSMWKKKSIF
WRLPYWKDLEVRHCIDLMHVEKNVCESLMGLLLNPGTTKDGLNARRDLEDMGVRSELHPITTESGRVYLPPACYTLSKEE
KIDLLTCLSGIKVPSGYSSRISRLVSLQDLKLVGMKSHDCHVLITQLLPVAIRNILPPKVRHTIQRLCSFFHAIGQKIID
PEGLDELQAELVRTLCHLEMYFPPTFFDIMEHLPVHLVRQTKCCGPAFMTQMYPCERYLGILKGYVRNRSHPEGSIIESY
TTEEAIEFCVDYMSETSSIGLPRSHHEGRLDGVGTVGRKTIRLDRKVYDKAHFTVLQHMTEVVPYVDEHLAVIRQENPGR
SESWVRNKHMSSFNEWLKNRIARLQNLPSETLQWLSQGPEWSATTWQGYDINGYTFHTVKQDSKCTVQNSGLRIEAASDG
GRRDQYYGRVEQILELDYLKFKVPLFRCRWVDLRNVKVDNEGFTTVNLANNAYKDEPFVLAKQVVQVFYIVDPCNKKLHV
VREGKRRIVGLDNIADEDDYNQHVHGIGQEIPLEEEEEEDEVQYARVDHEEGLFL
>ATEnSpm1A_p2#DNA/CMC-EnSpm Needs to be genewised; may be too poor [Arabidopsis]
MPSSENTYARYRSQQRDPLHVNSPVSAGNISGVQGSRHPPSPPTPTTQPSVNHSDSQAERLNNLTLEELLDSPGRAGLTR
LDPKRPPGTLWFDDDAAVAATVRSIFERDFKEPHANWSQTSKATIDRWYETFAQVYNWDRSINKRVRVEFEAKLKSRMTD
QVSRWKGNWKEKGDEAKPKWIDPDVWKGLVLFWQDPKSEKRVTTAEMLGIMIRMAKASINTVQARPHTKLCEKTGEKTPD
FLELLDETHRKADGSFIDGKSEEIYKQVTSRIEEEESHMGSGDNPESTGSGGLSVHAKNKIFTEVAPRKKGRIYGVGSLQ
FEASSAHSGPTLPSDDPVILSAKLAAAEACIQNQAEKINSFDILFDYLAEKDPALAAILRRGSSTQTRPVSANEPPVATA
PEQQANEETAAAAALANLATGSSPSSVF
>Chapaev-4_HMa#DNA/CMC-Chapaev-3 1287-2982 via tfasty with Chapaev3-2_HM, 1 frameshift. [Hydra magnipapillata]
MPRKCVNLVDNFCYICGEITFFSQKRTMTPLVQTAYQHYFNMKVRNQDKSWAPHICCSSCSVTLREWLKNKKRSLPFAVP
MVWREPKNHTDDCYFCLTPPIKAGLSMKKIGSVKYPNLSSATRPIPHSDSLPVPTPPQSYELEAENEYGNDVEIEENRPS
TSNDPDFLLTDVVPHRLSQAELSDLVRDLDLSQEKAELLGSRLKQWNLLQFDVKVSHYRKRQQNLLSFFEKKNNLVACID
VFGLMYCLNLNYDPTEWRLFIDSSKLSLKAVLLHNGNRLPSVPIGHAVHMKETYINMKVLLNSINYNEHKWKICGDLKVI
AILLGMQLGYTKYCCFLCMWDSRDRSSHYIKEDWPARNLNTEEKNVIAEPLVDPKDVLLPPLHIKLGLMKNFVKGMNKEG
QAFMYLRNKFPKISDIKVKEGVFVGPQIRQLMKDPAFDEVLKGQEKEAWEALKGVICGFLGNKRDDNYIQLVTILLQKYH
QLGCNMSLKIHFLHSHLDFFPPNCGAVSDEHGERFHQVISVMEQRYQGRWNEAMLADYCWFLCRDAPELVYKRKAKRSQS
RDDTP
>ATEnSpm12#DNA/CMC-EnSpm 1575-~8500 genewise with ATEnSpm7 protein (11 introns) [Arabidopsis thaliana]
RADPTYERGAIKFVRDVAAALGDDMIVCPCNDCRNIDRHSGCVVVDHLVTRGMDEAYKRRCDWYHHGELVSGGESESKVS
QWNDEVVELYQAAEYLDEEFDAMVQLGEIAERDDKKEDEFLAKLADAETPLYPSCVNHSKLSAIVSLFRLKTKNGWSDKS
FNDLLETLPEMLPEDNVLHTSLYEVKKFLKSFDMGYQKIHACVNDCCLFRKKYKKLQNCPKCNASRWKTNMHTGEVKKGV
PQKVLRYFPIIPRLKRMFRSEEMARDLRWHFHNKSTDGKLRHPVDSVTWDQMNAKYPLFASEERNLRLGLSTDGFNPFNM
KNTRYSCWPVLLVNYNLPPDLCMKKENIMLTLLIPGPQQPGNSIDVYLEPLIDDLNHLWDNGEWTYDAFSKSSFTLKAML
LWTISDFPAYGNLAGCKVKGKMxCPLCGKHTESMWLKFSRKHVYMGHRMGLPPSHRFRNKKSWFDGKAEHRRKSRILSGL
EISHNLKNFQNNFGNFKQSTRKRKQPESVKSGSDSDDLSSDSEEDEEEEAEVDEEELSRWKKRSIFFRLSYLAVRHNLDV
MHVERNVAASIVSTLLHCGKSKDGLNARKDLEVLGIRKDLHPQTKGKRTYLPAALWSLSKSEKKLFCKRLFDFKGPDGYC
SDIARGVSLEDCKVTGLKSHDYHVLMQQLLPIALRGLLPKGPRVAIRRLCKFFNHLCQRVIDMEQLLEMEAEIVETLCLF
ERFFPPSFFDIMVHLTVHLGREARLGGPVHFRWMYPFERYMKVLKDFVRNTARPEGCIAECYLAEECIQFCSEFLKKTTK
VQEKADRNTEYENNSILGGRPISAGTFISLTEMERKIAHLAVIQNMAVVEPYVDEHLQLLQNTNGRCRRDASLLWSMHTQ
NFASWLKEQAMNGQRFHTRTVDRKTQNSGVFYEATAVCRSSAKDKEQVVDLVQYYGCITDIILLDYNVFYVPLFRCNWAV
KGNGAKEEEGFTLVNLNHSQVSFLRDPYIMASQAKQVFFLREDDSSSWHVAMRGPSRRFREKESDDVTLDIGPLPTTVDI
DVDLEVAENERSDCEGIYVXXNEAEDINGETENEAELQAAEEPEGELELSGDEDAVQPKTKRQRGPTRMKDIAKDPNARV
RVEYTMMGEPIGKGSVKLASYAGALVREHVPITIDRWTKIGEEIRTLLWKSVQARFELDEEYQKVAVLKQMGCLWRSWKS
RQVTKFREAKTNQQRMNLRPKNVSPFEWRKFVKSKTSPEFKKIGSADPTEVTRLKVWVKSRTKKDGTPVNTNAAEKIKKA
AEIVSSGPQSNGTNEAQDSLSQLLGPDNPGRLRAMGRNMNKTKLACFQVKSKCMAEMQQKQDQLQQKVNELQEVIDKIKN
HVNTSEVGETSAARSVNQGSQPKCILMDWAGTDATVAEGCIISSDPDEIVNGSRLGPTDVKVLIDTAIVPEAYLWRPAVN
MEIMEKAVGQMIAWPVAMCVSLEEKLNPEDIAQGPRPTYGNKCKLLDLSSNDVIVAEGRWQTKDQSALVNGLPLGPAAVK
VFVDVILQPETFIWRPTMDVTYLEDCLQSFVAWPAHKVSYENTTDSAVQKAPLQSSQSTYPTASASKGKSAAASQQNGAT
EKSLGEKQQNGATKGKSGHNSSIQVSAAKGSESAGTIAKSLGLKANQKCKLMDISGKKRVVGAGRVHSIDPDQKVHHVRL
GENAARVWVDVVNVDDAAVWRPSDEIEYMRDSLGSSIA
>EnSpm2_OS_p2#DNA/CMC-EnSpm via genewise with EnSpm3_OS_p2 (3 introns, 4 frameshifts; who knows). Could be spliced to p1. [Oryza sativa]
MSQQGEPMSTTTTGTTSSRXPRTQNKIPKEVYTITEVDDVGYPTAPTKAVKKFPTICGVLGRRNFTILKDHIDLVPQEEK
EEAWRQFKESFRYPTEAEAGLKRQAIRKMGNCWKNFKTTLVTEYVLNPAQPEPFGKYPFITQPVWDEFHAXKSTKESREK
SQTYRDLQARNLHPHRXGTGGYAGKQAEWDKEDEAAAESNTPQVLADIPVQRARNWARARVKKNSDGTLSFPNPEDQAVY
QKIVELNAERQASQEVCSQKREDDILTKALGXEEHRGRTRGIGSNVPWKFGFPQYAWQYKKHKLSKAQKAARIKAQLREE
LKEELREELTAELLGMEARMEARIRDRSTDATPAPQYIATYTKDTNESSQEPTSCTLVVRVTPGFAIPAAEGQAFKPXPE
TRVHGAQLQAGNAKVQVDLVKPDWVGYTIPHPPNDEILTLGAARGTFIQWPKHSIEINITPRPAPSSRPPPTRPHQTVVS
LPPAVEQRDEDLQLQYDTDFGDEVWSKFTLGMPLVGDDALFKMGPACKELHXVLHGKSNARRKNRETSMLGQHDGQPFLG
PTAFIAVDFKDLWDLYRVRAIDTNLLKCYSL
>CACTA-2_Mlaricis#DNA/CMC-EnSpm 4853-7033 [Melampsora laricis]
MIDCTDLLHVRCLLFLDRFHGSDLKSANPLILHTALTASILDIFGQSSNSITKWILDIQTITIKLSTTHGILPTKSPIRQ
ILPEEAATLKKIPSSATTTFRWLKLDPVLKYLNCCSSCFAMYPENSAPSRCHHRIANIPGGPSDSVDPNKNTCSPPSEDN
EPEFSDSICGEPLFKYVRGVQKPARRYAFQSLSDWISRLLSRPEIEKALEVSASESSKPFDSTTNIHDIYQSRLWKEFCG
PDGSQFTSNSSNLSFALFVDAINPFGNKQSGHHTSITFVILVCLSLPPNLRHQPENVFVVGIAPGPREPSLEQMNWILRP
LVTELQVLWSTGLLISQTHEYQDGRLIRAALLVFVADIPSLRRCLGFPSATATFFCSFCLLKKSEINNFDQDLWEPRTWC
QHHKWACEARDAKTVKERKKIFKTHGVRYSVLIELDYWNIIDYHVVDSMHNLLLGLSSWHVRRFWAMKDLQNDEEKLPPI
STVELLKLVAEHSEPLPDWPNPPALDSERDPKGLDQNLNDIEFSNDTSSSNQDFNPFDDAGWKGEWNPPPLEEIIFDAEV
LRHINSILPKIHTPTWIKRPIPVLGKASFGKLKADKWRSLITLQLPLVLIPMWSGKDHIKTSLLKNFIHLVSVVNLGLKR
VINSTHIERYRYHIRKYLEGSVLLFQHCKLAPNHHISVHLADCLEKFGPVRAWWSFPYERLMGKILKAEHNNHISKQGLK
SLFFFHN
>EnSpm-5_VV_p1#DNA/CMC-EnSpm 11886-14363 (may have more exons) [Vitis vinifera]
MDRSWMSKDRMSREYEEGVEYFINFALEHCPNQSGIRCPCMRCGNLIHHTPNKIREHMFFNGIDQSYHTWYWHGEAGPTS
RQPTEMAQCYDTMDCGDVASTVEMVHVIDDEFMTDPMSFKKLLEDAEKPLYPSCIKFTKLSALVKLYNVKARYGWSDKSF
SDLLQILGDMLPVNNEMPLSMYEAKKTLNALGMEYKKIHACPNDCILYRNELNDASSCPTCGMSRWKVNKAGARNTKRIP
AKVLWYFPPIPRFKRMFQSPKIAKDLKWHAQGRENNGKLRHPVDSPTWQLVNQMWPEFASDCRNLRLAISADGINPHSSM
TSRHSCWPVLTITYNLPPWLCMKRKFMMLSLLISGPRQPGKDIDVYLAPLVDDLKALWEVGVKAYDAHQREFFTLKAILL
WTINDFPAYGNLSGCTVKGYHACPICGEETNSHWLKHGNKNSYTGHRRFLPCNHPFRKQKKAFNGEQEFRLPPKELTGDE
IFTKVDMIHNSWGKKKKVKQCESFANPTSCWKKKSIFFELEYWKYFYIRHNLDVMHIEKNVCESIIGTVLNIPGKTKDGV
KSRLDLLEMGLRPGLAPTFGLKRTYLPPACYTLSRKEKKIVLQTLADLKVPEGYCSNFRNLVSMEELKLNGLKSHDYHAL
MQQLLPVAIRSVLPKHVRYAITRLCFFFNALCAKVVDVSRLNDLQQDIVVTLCLLEKYFPPSIFDIMLHLTVHLVREVRL
CGPVYMRWMYPFERYMKVLKGYVRNHNRPEGCIAECYIAEEALEFCTEYLSGMDAIGIPSSMKDEWKCGKPLLGGRAITI
HDYKLVEQAHHYVLQNTTIVQPFIE
>Transib-2_DW#DNA/CMC-Transib 491-2635  [Drosophila willistoni]
NNFACAFLRLFKIFADIADKVEFSHKELLQIWIDNGRTSKALSEWVFEKINENLKAANKLEINKKISNFVAYICKYMPKC
QRKIEKFKEKHQQFLDSKMTIHIERAAVKECSVGRPRLTYDEGSSRLKRKIASDIATSQGRNTAMLFHAATSAKKSKCNE
CTDCIDCSLKENVINVKRKSDCNQKPVQMTADEALAFLLENSFSKKQYNAIRTINQKHGCDIFPCYDNVFKAKSECRPVG
IQATETSAQVSLQNMLNHTAKRIIIFQKEVFAQFESVTDVKLIVTYGFDGSTGHSLYKQQFEEKVQDTLDRSLFVTSIIP
IKLLDSLGRVLWMNSKTQSVRFCRPLKIEFIKESKEHILAENNRLKDEIENLKPYLFNNWSGRTVSVSFDLNMTLIDGKV
LNALTGTNSTQSCPICGATPKTILMTTDTNAEVFKPKPFALQYGVSPLHAWIRFLEFALHISYRIGINKWQIRDPNDKAF
MASRKKNIQEKLWKQMGLHVDRPKQNGSGNTNDGNTARRAFSNVHLFSSILNFDEDILECFGTLLIAISCEYEICPQKFQ
NFCTKASDLYMAKYPWYPMSPTVHKILVHGSQIIAASSVPVGCLGENASESRNRFYKRDRLSHSRKNSRINNLVDVFHRA
IDSSDPLLSSKYFLDKYNNHNYKKLPSKVLELLAKPNVKTDDENLALVDIEYESDSDSDYKPLDAYSYELEAEEY
>Transib-1_CQ#DNA/CMC-Transib 757-2850 [Culex quinquefasciatus]
MDNNTVVSMFDVTKHHSENVKTAFEYICKNYNIAEPSHDLLREKLRMLFCSFKTRYTKAHRRSSFFESSNNNWLHSEFDL
EGFIVENVNLTSGSTKKRGREPKEFDAKSDRSVRRTIDNESLDPKVDSIHKALLMARRTAFKRHDVNVVKVIGHLLKNQD
YFSKMYVQLTNDRQLKTPEEAFALIIEAHLTKAQYEIFHFDCPSRYPPYNVIAGAKKTCAPPVEFIEGSASKIKVELQAL
MNHTASRILQVIRQDVTDYLDSHDLDCAELVLLSSWGMDGSTGYSQFNHSLPEGSIDDSDVFAATLTPIQLYVHSDGKHI
LWHNPTPQSIRFCRPIMLQFIKESREIILKTKHDLEKEMCELTPLKIDLPGDKFVLIDFNFVLSMIDGKVLTYITGSSSM
QNCPICGATPNIMNSIEKLEEGFTANEDTLYYGISPLHAWIRFFECLLHISYRMEIKQWRVTKDLKLNYLKRKKMVLEAL
HKAFGFRADQPRSGGKGTSTTGNICRKAFSNPELLSSVLGIEKELIERFRNILIAINCQEAINPEIFDEYCKDTYRFYLE
HYEWYKIPATLHKVLAHAGDIILHSPAPLGVLAEEAAECQHKHLKLFRSHFARKRSREANLMDVFLRALHESDPYLSSMW
VSKKHTKKVCSSYPTVVRSFMVFEDSESDTSSNIMNDLMDAVDEVDEDFEEDVVDED
>Transib-3_HM#DNA/CMC-Transib 862-2814  [Hydra magnipapillata]
MSTITRYQIHQFIRQHGLSMSNEKDKLYVYNFIREYCSEFDAQFVTFLSKYRKRWSLSKRIDENFMKHNSVWLQKDFIKS
FKNQDNKTESIVSGRPVKLFDDSSNKTKSRKVAAMDLLTCSSNELLYASSCNLFKDSRRKDAKVVRSLSIKQPFDTEHTQ
NTLNEALALILDIDMSKSDYQRLRNNALSKGCNLYPAYNDVRAAKEQCLPEKTLWTVNDFSAEINFQALVDHTAIRLIQL
QKQVIDSMNDLERLTLYSKVGFDGSTSQRIYNQVTVEKENRDLLEEASLFISCFVPLQLFGFINDKKIIIWSNPHPSSTL
YCRPIRFSFKKETIEVLKQENQFINNSIANLSLTFCENLTILHKIEITMVDGKVATALSTATTSSQCCSVCGCSPKKMND
LNAAKNMPLTEIGLCFGLSTLHAWIKSMECLLKISYKLTVKKWATRTISEKKIIQERKQKIQIRFRDEVGLIIDMPTSGG
SGSSNNGNTARKFFQNAEKSAQILELDVSMIKMLHVILCTLSSNFLIDSSLFREYCYKTAEKYVILYPWYHMPQSLHHIL
IHGWQVVERMALPIGMLSEEAQEAQNKNFKKFRESFSRKCSRSKTNEDLLRRLMCSSDPLISSLRKPHHPKKNALPNGVF
DLLKEVPIFD
>Transib-5_DBi#DNA/CMC-Transib 547-2593 via tfasty with Transib2, 1 frameshift. [Drosophila biarmipes]
KVAIRRGDLLEVWLDKNRNVNATFDWVCVEVIPNDFPENDLEVIKNKIKNFIVQIKRLLNKAHRNIRRFKEENASWLASE
LIFYSKDDCSHNLGGRPRVSYDEGSLRHKRRLASELAKENSTLLLVEAAAMSAKKAKNTDISHILKTTINSPDSSKLRQQ
LSLKEPIPLSPDEALAFIIENSFSKQQYINIRLKSIEKNCNIYPSYEKVREAKEKCRPIDISVSDTIAEVPMQNLLNHTA
SRIILYQKPVFQQFIDINKVKLIVSYGFDGSTGQSVYKQRFNDTEPICLDQSLFVTTIIPLQMVDQIGRIIWRNRCPQSV
KYCRPLKIEFAKESRDHILNSKFLLDSQIKDLKPFMYEAEQLRVEVLFEVHMTLIDGKVLNTLTGTNSTQSCPICGASPK
DFLKETEVNSQKFKPKPNSYQYGVSPLHAWIRFLEFVLNISYRVSIQKWRISTDSDKEIMMVRKKDIERKLWSEMGLHIN
KPSQNGGNSNDGNTARRAFSNVKLFASILELDEELLNKLHIILIVLSCEYDVCFNKFKKFCEETLRLHLIKYPWYPMTAT
VHKILVHGPEIIKSSVLPVGCLGENASEARNKYYKRDRILHARKNSRVNNLTDVFHRALDSSDPYLSSIAQKKSSKSHPL
PSEVIALLVPPKPEDAAQVYSVEDEFESILYFDLDLEEESLN
>Transib-5_DAn#DNA/CMC-Transib 719-2581  [Drosophila ananassae]
MWCSVIGSFPDKAKKVYDDLQHRFQSDGYEIIENISKKVLDYLFKKFADMWNKSYRNKVKVIQVNSDWLAKFIYSNLCSC
LSQSRKSSDRGRPKLSLAVCSERTKRRRIAEISEVNQSAADDIRSVCRQPNPSIFPAKECEVVXLITEANLTKQQYEHIK
SFVNSKIEAXFFPCYNNILKGKQESYPELISVTESDIEVPLQSLLDHTASRILKLQSDVTDKLDESHNYLTLIGKWGFDG
SSGHSEYKQKFXNNNLEDSCLFVTSYVXLQLFVKSDNDKEQKIIWKNPRPSSTRYCXPIRIQFQKESVNLIKNEEEYFKN
KIQQLTPTELKTATNRKFCVDHILQLTMVDGKVCNALSETSSSKCYICQARPTEMNDIDKCLQKKVRTDRYEFGLSPLHA
YIRFFEYFLHVSYKLEIRQWQIRGEENKELFQRRKQNIQSEFREKMGLIVDKPRTGGSGNSNDGNTARTFFNNPHLSAEI
TGIEQHLIEKCATVLQALSSGYKINVEKFRKLALDTARELTTKYSWYYLPSSVHKILIHAPDVIQYALVSIGELSEEAAE
SRNKDVKKYRLNHTRKTSRIATNKDLINRLFLTSDPFITGQRKLPSKCKTILSKSAFDLLE
>Mirage#DNA/CMC-Mirage gi|17563636|ref|NP_503320.1| Predicted CDS, polypeptide chain release factor family member [Caenorhabditis elegans]
MARNPRTTVRRILNSAPRSLLIQSVTIVALDPTDNNHGSHQPGSNGPSNSSTQADNFETETTADEERQKEDGVEDELEDE
ETTGFIDEDGEIRYPVDEVGNYEIDQEAETDESFYLDTQRDSSLCDERSQLCRSLSDQNLRTTFFLITTTNSKAAILRYL
HFHNVSQDSILRKLLLNDSHLTLVEVCNLCAQNIELCKCEDMQEKCQLIFGDLKKWLEVILNSFANIMMKTKTTILEGYN
SSSPINKGIFKKKLLSEMADNEMWMHFESSFDGIKVHKNGNQNIWPYSLLNLDLEDVHRASPQALILAALFIGFKNPTTK
IHDRLTQWILLQMDEHVFFSEGVAWKADLTCANHDDPARRIVYNQCGLRSSGSCNFCLNQETECKINDEYTTLRENLTGS
CPSTMNDGLRQRNQHSHFHKHVLYMHLCPVTSNARMLPKRVHFSALFSKGKWNLFPSKSVDFSSTPSLPSRFRSLSGKAS
QCTGSEKALSIVVAAAFSGELGGVPSAIILSIHGLYRLCIEPQSITDETLHLKIEQISKSIEVLIVKRAPEMLNGIKVHQ
VLYHLARMTELYGSLFPLSTQWFEYFYHTIQRTLVPEIYNGLGMSIMRKMSALQEIKTEAAFRLHTNHQFRTEANLKMCY
ELGLLRRLKRISVVPTPPQYQQFCETGDVFLNVVYHDGIRYSNYCNKKTDDSNVTFIEYARVRFAKIIGMLLKENNTDLR
FILKKYCNTNDHLIDISNKLYEEDVPQMHIQNWVDSVSKSSFGGRVTLTNTVVVVSADSIVGHAVVVKRNNNCVALPFSR
RISLS
>EnSpm-9_HM#DNA/CMC-EnSpm 216-2204 [Hydra magnipapillata]
MADNKRKHYMKSYMRDYRSFKKLFNEEEEGKEDDKEEGKEDDEEEGKEDDEEEEGKEDGEEVGKEDDDDEECKEDDEEET
NENDDEEEEGKKDDDEDKEDDEVVGYSEKIDNAESEVPQSVKTRNFLHKWAVENNIKSKPLNELLTHLNSFMKDIPKSGT
SLKNTLRSVDVENVAGGDFVYISLKIALNNYVKCFRKPAEFDLIINVDGTQIYNSKKKQMWPILCTINQRGPYAIALWYG
TGKPTVLGEYLKKFVAELKFYFINGYEGLKVIIKAFVCDAPARAFLKCIKSHSGYDSCERCEEHGEYHKGIRLLGTKSLI
RDDKKFKEKFYSEHQIGKSPLSKLEIPMVTGFVLDYMHLVCLGVTKKLMKNYINNIGSSVNSKISSELLEIRKCTPTDFQ
GWPRSLDEFSDFKATEFXFFLLYAGIVVMKGKISHDEYKLLLALSVAMHILLSETMVKDNSMVCYCKNLLEWFTTESIVF
YGPLFASYNVHSIIHLADDVINHKVSLNKISAFPFENYLGKIKRMIHSGTYTVAQVVKRLDEHSKVVHLLPAKRSVIFNT
NFRNRVYYISKIGFVIVEKVVXNKYFCKLFKFSKLTNFFESPLPSSVIHIYHLTTLSYCKKIELERNALQHKAIMMPYDK
GGYVLIPLLHCDLNDNFTNLQF
>EnSpm-6_ZM_p2#DNA/CMC-EnSpm 7909-10095 (may have more exons) [Zea mays]
MLEKAAAQYQDAPEPIQGAPEPTQGAPESTETTTERSRKRKQSDRNRGDRGLNKFPDKTYKITNVSPNGQPLAPEEALPK
FRNALGFLVRDNLDITIRQWRDVSDDVKNQMWNKLVTRFVLPGGSEELVKKYTMKQFAINFRNWRSEMNTKFAKKGLDPT
KKYKISAGQWAVFLEQRSSPDFISLSEANSELSKKNKYRHHLGTGGYKRQVPKWRQEDAEKKAAGLPTLSEQLGERTANW
IRARKPRETESGVSFDDPNVEEAAKNIYAIAAKQSEGTFKPQREKDILTAGLGNPEHPGRVRGISSKEGWKEGFGPQWEG
LYKKRDRYKEEMANYFKEEAKKEFKDLMSEMLSNPPPELMQQLAMASAMSVQQMTTPQMQIIPAAQTPAATEGTTIPSSV
ASTGNKVRYPVDDITRPVACTLVIRYGINNQRTRKVATGLAIPGRKFHGNDIPEEYCRVEVTTVVQGYEDDMLDIPGPEG
IETLGQAIKNFILWPRRDVELLDWSNSSQAQPSPPSQIVVPIVHPSSPPQTSHAAPHPLSDPPSPHPHGGPPSPPHTSPF
RDPPSPQPSPRPSKKSKVSIPKVVSPYDKKKKSKSTAGTVRFLKGIGRSLTSDNVDLADLEESAKKAEAMAAKIKKPTKA
DYKNVPKKYVPGRPLLTFEKLRKVPANIKRLHDWYMRASSVGIDTISVNIPAHAFIGSNQKAVVTFEDMWLMMNLQRLDV
QLVTIFAL
>EnSpm-15_HM#DNA/CMC-EnSpm 356-2704 via tfasty with EnSpm-4_DR_p1, 2 frameshifts. [Hydra magnipapillata]
MINCAYCEYTASCSNSYKCHLKVFHNKHSYGERLVCSQGGCPMEYNSFQSLSKHIEKSHQEVILGPTLEEADTMQRCFHS
NNLSLAVHNTEPVCPDNMLKFGIKFDETDGIFEDSAYFISKLRSYSNIPLTTTLKIVDACSDFVSSIVTGISNETQGIFD
KHGLQKSEYNNFFENILRLQKPFQGLESLHKQTNYFEKKGYYIKPKSYPIGHFINTQKTAKGVVCSTCIATGQYVSLKQC
LEVFLCLPGVLDEIRSNTKPSTNGLVSDFKDGELWQNHQLRRQYAHSQNTFVIPVFCFFDDLETANPLGSHSTVHKIGAL
CTILKCLKPLHNSKLENILLSAVIYSSDRIKYSNKDAFSIYIEEMTELETKGFTIKIDGNEFKIYVVLAQIIGDNLGLNG
ILGYVESFTGNIPMGYVESFTATYPCRICKMKRKDFDSIFVESVELLRTRECYDYDVSLHNCSLNGIKEKCCFNKIPSFH
VNDNIYCDIMHDLLEGICKYVFQKMLNYLVFQKKFFNLGDINSRIRNFSYDHSSIPSCPTEYQIKNGSINIGAIEMLNLV
LSFPLLVGDLVPFEDNVWVVFLLLRQIVLYSFGLYFSKPDLLHFGSLITEFLQEYCFAFKCGLTLKFHNLIHYPRIIKML
GPLSHMWVMRCEGKLRGFKRTASSVGNFKNVCKTVAIRHQMDQSTRFMAKHGLKNNEFCVAKTEPILLCHVIDGKTISEL
IGNYGLYREIFQTKCVSVNFVSFKIGDVVIYAVEELYPAFCLIKQIFVSDTNLFYLSKVVYYN
>Shooter_ZM#DNA/CMC-EnSpm 2682-5060 [Zea mays]
MSQNNSSWMRMHFTTNEWQTNFRKFIQTTFGGTTRGETAPCPCSRCRCMSYRTQSQVQSHLVIRGFDESFIEEGNQANDS
DEGNAAAVVNDDETGDSGSVTELVSTLISGAIHEDIIGKINEEPNAKAKAFFNLLTEAKKELYPGCKEVTKVSFIVRLFQ
IKCMFGLSKSALAAVLQLFRLVLPEGHCVPDTLDKVQKVIHDLGLDYQKIHACVNDCLLFRKEYAAMDTCPTCGESRWQP
TISGHHEEATNKRAPRKILRYFPVIPRLQRLYMNSTTSEYMRWHKEGLVQDNKMRHPADSKAWKHVDNIYKDFATDPRNI
RLGLASDGFNPFGMVNVAYTIWPVILIPYNLPPWLCLKQPFWMLSMLIPGKNSPGNNIDVYLQPLIDELKDLWEKGVETW
DAKEKKNFNLRAILLWTINDFPAYGMLSGWSTKGKFACPYCHKDTDFLWLKCGSKHCYMGHRRFLPMDHRWRKNKASFNN
TVETREPPVPLSGEGVLQQYESFEQITFGKSTRKRKQREEETRWHNWRKKSIFFELQYWEKLLVRHNLDVMHIEKNICDS
ILGTLLGMEGKSKDGEKARLDMEHLGIRKDQHIVLGNGKYTLPSALYTLGKDEMIWLCQFLEGVKMPDGYASNIKRSVDV
NKCKVSGLKTHDCHVIFQKLLPIAVRNVLPENVALPLIQLSRYFNAICSKELSAEDLEQLSTSIPETLCRLEMIFPPAFF
DIMIHLSIHLAEEAKLGGPVCYRWMYPIERYLRTLKAYVRNKAHPEGSIAEGYILEECMTFCSRFLQDVETK
>EnSpm-15_OS_p1#DNA/CMC-EnSpm 1255-3450 (may have more exons) [Oryza sativa]
MAERNWMYNGWHYGSAPSDEWIEKTNMFLDHAFSIPDLVQDGSIKCPCGRCRNYMRHTRDIIEAHLCKFGFKENYETWTA
HGEEHIRNNEPVSPLAHEEGFDQPDRMDEMLLDIGAVQPPGIDEEPTSSASAFYRMVDGANESVHDNTMHTSLSAIARLL
ALKSEYNMSIAHYDDTLQLIHELLPPDSKLAEDFYHSKKLLQGLGMTYIKIDVCYNNCMLYYKENEHKDKCDFYNTPRFE
DGQNKVPRKVLRYLPITDRLQRLYAHEETAKAMQSHKQSTCGKLVHPCDGEAWQQFDIDFPTFGRDARNVRLAISTDGFT
PFNIGAAPYSCWPVFVSPLNLPPGVLLKPEYIFLSLVISGPEHPGKKLSILMQPLVDDLFKLWEGVETWDASRKERFNMR
AAFLWSVHDCPAYGNFAAWSTHGIFGCPTCLCDTQAFRLRNGGKACWFDCHRRFLPRDHEFRFQANAFRKNTVVLDEAPR
ILKGEEVRDQMYAHVADRNNYGKTHNWTHVNCFWQLPYFHKLLLPHNIDVMHNEKNVAEAIWNTCFDIPDKTKDNVKARQ
DLVDICNRPSLHLELKGNGKWHKPRAAFCIDKNDKTIILKWFQDLKFPDGYAANIRRGVNLLRRRIFGLKSHDYHIFIER
LLPVAFRGFLPENIWVCLAELSFFYRQLCAKELSKDVVHSLEQNVAVLLCKLEKIFPPGFFNLMQHLIVHLPREAHLGGP
VLARWMYPYER
>Q7JQ92_CAEEL/9-233 transposon family Tc5 Pfam:PF03221
MFALHRHFPNPLPSNPSISRHEQKVADHLASIIKESYYGDTSVEESEYLVQEEYGDWEPEVFEPYDCVLPDQDDVLFGEK
AVSREELDKAITFYRSGKIGSRPITTMHHSYRWIRTDAHMNKLRKYEKDKKAFQESVRVRLAQLTQRLYEEVKEKLDNGV
NLHDSDLMAMALEINTREMKLQKQNEMKLQKASQSWITRWKQSHRIVSRRVTKFVTRKCLINKDA
>Q10844_MYCTU/4-103 transposon family T9 Pfam:PF01548
LLEAGITVVVISPNQLKNLRGRYGSAGNKDDRFDAFVLADTLRTDRSRLRPLLPDTPATATLRRTCRPRKDLVAHRVALA
NQLRAHLRVVFPGVVGLFAD
>O16514_CAEEL/9-228 transposon family Tc5 Pfam:PF03221
IFLLRKKFPDPLPSAPSITREEEKMATHCWNIINQAVDGDIEVYEDDDAVDDNHEDWIPEEFEPSDDVVLASHRDVMFGD
RSITRELLDEAIVFFRGTKKGSRTLSSMMEKYKWIKRECDLSKLRKYEKERDDFTESRTNLLRRLGKTLYEVVKDKLEKG
MMIHDSDLASIAREINNNETKVENFIASSNWVSKWKKSHRIVSRRITKFVTRRCMRDKVA
>gi|153092930|gb|EDN73961.1| IS1016 transposase [Mannheimia haemolytica PHL213]
MRKSRLSQYKQHKLIELFVAGVTARTAAELVNVNKTTAAYYFHRLRLLIYQHSPHLEMFEGEIEADESYFGGARKGKRGC
GAAGKTAVFGLLKRDDKVYTVVVPNTQSATLLPIIREKVKPDSLVYADFYRSYDVLDVSEFNHFRINHSTHFAENHNHIN
RIENFWSQAKRHLRKFNGIPKAHFELYLKECE
>gi|109148673|ref|XP_001119546.1| PREDICTED: similar to helentron 5 helitron-like transposon replicase/helicase/endonuclease [Macaca mulatta]
MNYNQNAVEKHPDINTALLNYNRNSVEQHPDINTALLNYNQNAVEQHPDINTTILNYNQNAVEKHPDINTTLLNYNQNSV
EQHPDINTVLLNDNQNAVEKHPDINTALLNYNQNSAAQHPDINTVLLNYNRNSVEQHPDINTALLNYNQNAVEQHPDINT
TILNYNQNAVEKHPDINTTLLNYNQNSVEQHPDINTVLLNDNQNAVEKHPDINTALLNYNQNSAAQHPDINTVLLNYNRN
SVEQHPDKPVCPRGI
>O07182_MYCTU/70-166 transposon family T9 Pfam:PF01548
LLAAGQQVVRVPTKLMAQTRKSARSRGKSDPIDALAVARAVMRETDLPLATHDETSRELKLLTDRRDVLVAQRTSAINRL
RWLVHELDPERAPAARS
>Q7C122_SHIFL/93-182 transposon family T8 Pfam:PF01527
KERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNP
FWRNKHDERP
>Q79UU5_BRAJA/21-108 transposon family T8 Pfam:PF01527
AGRRRRWSAVVKGRIVAESYAPGTVVSEVARRHDLSPQHLFAWRKAARAGLLSLPAEDAPLFVPVVSELRPAGMCVEAAT
RNGITISI
>Q56420_THETH/67-165 transposon family T9 Pfam:PF01548
LAENRLQVALVNPYHLAAFRKAKGERQKTDRQDALLLARYAQVYHGELWAYTLPPEALRELKALVGYREDLAGRERAILN
QMEAAEWAGSKEVLALLQK
>O30788_RHORH/75-172 transposon family T9 Pfam:PF01548
LAAHDQSAVYVPGRTVNRMSGAYRGEAKTDARDAYVIAETARHRHDLSVLIPPAQLAAELALLTSHRTDLVADRVRLINR
LRDTLTGVFPALERAFDF
>O52279_9RHIZ/1-97 transposon family T9 Pfam:PF01548
MMVQRLRLSKVNPRLARRFAEATGRLAKTDRIDAGLLARYGALLAPRILRANTQIHNDLKELHVARLALIKDRTAAKNRA
KNVSNLLLKRQNVDRLR
>gi|161869314|ref|YP_001598481.1| transposase for IS1016 [Neisseria meningitidis 053442]
MALAADEVFEDPVEPDESDFGGRRKGRRGRGAAGKVVVFGILKRNGRVYTVVVDNAKSETLLPVIKKKIMPDSIVYTDSL
SSCDKLDVSGFIHYRINHSKEFADRQNHINGIENFWNQAKRVLRKYSGLTKIRTRRRSRRQYK
>Chapaev-11_HM#DNA/CMC-Chapaev 855-2629 Via genewise with Chapaev-10_HM (1 intron, N-terminus missing)  [Hydra magnipapillata]
WKTLLRNSPRTSLTLPDEITNLPTTKSSICSFCYTLPAPGYSHNCTPTSAVANIITLSFLLGSLQAEQVASGIIKSKMAT
ESLIDGSTFCLSTGGNPLKVTVGTPENKSKRTSIKQLSIEIIKQLQIVLELSNRKTKEMLSTLRKGLGNKLSIEPNIFGR
LSELEEYISNYYSVQKCEFVDSKGHLILRDLVYVQNTSDFVLDLLKLRGLDPTSAFIRISLDGGGSFFKVIINVFDCQKD
NESDEYLNSGVQRSQFLAIVEDIPESNYNLRLVIEKLNLQDVSFYVAFDLKCGNALFGLSGHSGKKACLWCEGISTLNLG
TKRTLGSIDYWYDKYSLENNSVKSSMQEFMNCINPRILYINLDPNTLIEQLVPPPELHLLIGFVSLLGNFLLDVWPGFDD
WLKSKNVIQRGYQGRGWDGNNSNKILENLDSLETQILETFTRLIPIVQCLRDFRNVKNCCFSSNLQTGFKEAITNLKNSF
LSAQEVAINLNKQINTTWKVHILLCHVQPYVEHHNKGLGNFAEQCGESIHAKFKPTWTRFKRQIEHSEHGDRLLSAVVDF
GAKRI
>Chapaev-6_HM#DNA/CMC-Chapaev 466-4886 (8 introns predicted by genewise using Chapaev-3B_HM)  [Hydra magnipapillata]
MTESHETKLKTLCRICGESVDNDSVLLTKHIARIEFCFFIRIDKDHSNIHPQKMCYRCFSILRNIEKGSNTELKLRSWPE
NCNLTECVCFKSNKGRKKKKKISGRPSSISYKENIWTRHKINNIQSKLSPQTKLNLKLQDINCILNPHVHLCVCTICNDI
MHKPIIIKNCLHSFCASCLLPLIIGKQIAKTKCPKCSFSIPSDGLISSTNVIEMIENLQEVCKQGCGRLFKITQLSERKK
HQKTCQKTQISSSTTLSLPTSSSSTSQINLSDIFALDSTSIIPRNIEDAALHVIKQKMSQTTSNVIEFPTGGPRVRLFLQ
KWLKNNNVICASNAKQRNVAKNWSCDDLIVKNAPFMVEKKDSKGSYEIKELPCAYIENLQGHITNVLDRLDSNNLLLYNK
IKDNEIHIKIGGDYGGDSFKMFYQVANVEKPNAKTNTTIFNIFEAKDYTTNLKISLARFTSDIDLLQKMIWKEKQIRVFV
FGDYEFLCAIYGITGANGRHSCLFCNITSQGMSNPINDNIQMRSLKTLDLSLAKFNNHGADPKFAKLCDNVIDQRLFNVP
LDQVLXVPALHISLGIYLKFFNMLEDSCHTIDIKIAGLMAVNNQMLDCEEFNAYIEHQRQINQLQISVQELEDKIRVITE
ALEMQILFNAENEEKIKLIFEPHLIHFGKKKKEQISELKILLEADHIKKSFGPLVKELDKVLNSLGVQRQAYHGKSFVGN
HVNKMLKEKSILELCNSIPNLVVELGFNDTNIHKETIEICKNFNVLFSKFGICHKLINSCNQFNEDNKQDLENQIKDFMK
YFRENWPNASITPKLHMLEYHALPFIRKWGVGLGTYGEQGGESIHAEINRMKSTYCHMKGVGRLRSIMNEHFIKNNPNVK
KYQKKAQPRKRKIEDTKNNSIKYCKMI
>Chapaev-14_HM#DNA/CMC-Chapaev 1330-3504 via genewise with Chapaev-2_HM, 1 frameshift and 1 intron (1913:2112) [Hydra magnipapillata]
MPNQAKNHDENRKFVCLLCLKKCLRQLTTFQADRICQLYKTKINISDTRVPKGFCESCRITLRRKQEGKEVALPPLFDFK
SIQVRPETRGTMCCCLICRIGRSKLQEKHPLIEQTTIEKKPKVRCSKCLSPLGKGLPHQCSQIMLRENIQSLAAKDAKSS
EQIASRVISNKELSPEGTILLAKASGGPPLTVTPGQSSAQTPSSAPKLTTVALVNVQLNTGLSNNGLKKLVRTVNKTSSS
KMVERNFYMNFLRLGQQLSDFFTCSDLKITDEKTDSCTVHVVAHCNDLSSLVNHVIQSRKISGGYFVKLGIDGGKGFLKF
CLSIVDTALRDETSSPHQQQPLTQRTGKDTGVKRQIIVGVSEDLPETHSNIEQIWSLINANGVKLILACDMKVANIICGL
QTHSSTHPCTWCDVKSNCLAKSGNLRTLGSINSSLESFQQSGGVVANAKLFGNVIRKPIICGPVNVLILEIIPPMELHLL
LGVVNHLFKILKTAWIEAVKWPAALHIQLSPYHGGQFEGNECRKLLKNVDMLQQLAETNMVPNIVCIIEAFKSFNLVVKA
CFGYILQPDFAEKIQNFKKCYLMIIGTSITPKIHAxVFYHIKDFISHKGSPLGPYSEQTVETSHQDFYQHWSRYKRNNNH
PEYKERLLRCIIDLNSKHL
>Chapaev3-6_HM#DNA/CMC-Chapaev-3 156-1936 via tfasty with Chapaev3-5_HM, 1 frameshift. [Hydra magnipapillata]
MFFHSYFYSIVIKKVTISLFLLDQIYIMMASSNRHKCKHNPNSFCYICGCYALVRQRRNITNFVKLAYESYFDIKLGDQD
KKWAPHTVCHICEESLRDWTKGKRNNLPFGVPMVWREPLNHIDDCYFCLVDTSGVGKIKRQKITYPNIPSAIRPIQHSNE
IPFPIFKGLFLSEDEQSVSATETEEFLPDLEDFSSNAKQFSLPQCFSQIELNDLVRDLGLSKQAAEVLASRLKEKNLLDN
FAKVSYFRTRDETFVDFFSEVNLFVYCHDISGLLLQLGISVYNPAEWRLFIDSSKRSLKCVILHNGNIFGSVPIGHSVYL
RETYDDIKMVLNLIKYHEHNWIICVDLKMVNFLLGQQKGFTKFPCYLCMWDSRARNQHWIQKEWPIRKTLTVGMQNIVNE
PIVSRNKIVFPPLHLKLGFMKQFVKALKTDSDCFQYIVKSLPGLSIEKIKAGVFNGPQIRYLIKDKEFIKTMNIKEKTAW
LSFVIVIKNFLGNKKAENYADLVDKMLKAFCDLGCKMSIKLHYINSHLDQFPENLGDVSEEQGERFHQDLKTIEDRYQGR
WDIHMMADYCWGIKREDTGKVYKRKSNKQKFLPD
>Chapaev3-2_AC#DNA/CMC-Chapaev-3 427-2112 [Anolis carolinensis]
MSASAISRHKCLNNPDSFCYICGSFTIPSQRTNISAFVRQAYFAYFKVKLGDQDKSWAPHKVCKQCVESLRMWTKGTRDK
LPFGIPMVWREPRDHSSDCYFCIVKTSGYNKKNKCKIEYPSLPSAIRPVPHSAEIPVPVFIELPSFEKQEYGEELSDSNN
EDFEIEDDSVRKGFDQHELNDLARDLGLSKKASELLASRLHEKNLLERGAKVSYFRSRESAFLQYFRSDGGFVYCHNIHG
LMEELGIPIYNATEWRLFIDSSKQSLKCVLLHNGNLFGAVPIGHSVCFREEYEDIKRVIDLLQYHKHNWIICVDLKMVCF
LLGQQCRYTKYPCFLCMWDSRAHEKHWVELNWPPRSDLKPGDPNILHEPLVDRKNIIFSPLHIKLGLMKQFVKALPTEGD
CFKYLILAFPSLSFEKIKAGVLDGPQIRQLIKDEHFIRTMSELQKNAWLSFKNLVKDFLGNTRAQNYTKIVQKLLESFKM
LGCNMSIKVHFLHSHLADFPENLGAVSDEQGERFHQDLKVMEARYQGRWDVHMMADYCWSIRQDCPQIKHSRKSYKHKFL
P
>Chapaev-3A_HM#DNA/CMC-Chapaev 382-5517 (8 introns; 7 introns predicted by genewise using Chapaev-2_BF; added large first exon, first intron predicted by Genscan)  [Hydra magnipapillata]
MATATSANHILCLIKLCRLCGNYIGTDSFNVINIIARVDQAFFTEVGEDRTEIHPPKICMKCYTLMRHIEQRGTTSFNFI
LTSWPHTCSLESCICFLKKSGRKKKKPFGRPPSVNKDVWTRKSINEILDSFSEMPRLCYESISIVNNPHKDLCICKICKR
IFHRPVLLNNCQHLFCASCIFPNLVGKLETEAKCKLCGSNISLGSISKATTMQNILENIVLKCSENSCKSISNKEEHEQV
WKSGNILPQCSASSSSSLTVTDIYKINTNSDIPKELEYAFAHFAKLKMAKNNSHSFELPSGGPRTKNVKLPSLSNQRKVA
KYWSGNDLIVEDKELLFELKNKKGTFELKDTPTAYINDLPSHLIKVLDQLERYNQLTFEKITPSEIHIKIGGDHGGGSFK
MSYQVANVATPNSKNNTTVFNIFEAKDYRANLKISLSRHIDEIRQLQAMKWREKCLRVFIFGDYVFLCAIYGITGATGRH
CCLFCEITSSEMQLNIEARTRPILLRTLATLKSDYERFKNDGGNIKRAKNFNNVIDEPLFDIPIEQIAIPALHISLGIFL
KFFKMLEVECHLLDIKLAGFLAINDKHLESSEFDKYVEKQAEIHQLEYDVDDINTKILLIQDTIVVEVFRSPKNTEYLQL
MYSERIALLKSKRIEKVSTLNRKIAECSKFKLIEGMGPILKEIESVLQSCGVQRQAYHSCSFVGNHVHKMLKVHVFVYKS
IIYICVYMYFIFQVDNIKKLCDSISQTVFNNIADREHPIYMEAVDIQQKFKALFHKYSKCDNEMNSCHLFNEENIKSFET
AVCELMKFFRSTWPNESITPKMHLLENHIGVFLSTWGVGLGLYGEQGGESIHAEFNNIGRIYSTMSGTRKLECIMRDHFI
RNNLIASSLKPPIVPRRK
>gi|161870957|ref|YP_001600137.1| IS1016 transposase [Neisseria meningitidis 053442]
MRKSRLSRYKQNKLIELFVAGVTARTAAELVGVNKNTAAYYFHRLRLLIYQNSPHLEMFDGEVEADESYFGGQRKGKRGR
GAAGKVAVFGLLKRNGKVYTVTVPNTQTATLFPIIREQVKPDSIVYTDCVAMMY
>gi|161869421|ref|YP_001598588.1| IS1016 transposase [Neisseria meningitidis 053442]
MRKSRLSRYKQNKLIELFVAGVTARTAAELVGINKNTAAYYFHRLRLLIYQNSPHLEMFDGEVEADESYFGGQRKGKRGR
GAAGKVAVFGLLKRNGKVYTVTVPNTQTATLFPIIREQVKPDSIVYTDCYRSYDVLDVREFSHFSFAETSFSYQSQHTFC
>Arthur2_tp#DNA/hAT-Tip100  504-3239 [Mammalia]
MASKKRKGGAAREREKKARLMHEEAKQCRKISTFLAQSITENVSASTRPSLTGNNTTEIDHLSKGGSITEXNMPIDTCLT
VSEEQNTERQELKVNENXSNSQSNENAMGPEPENILXLDFFQRPKFNQLEFFFKYHPIQPFEMKDLPFNGKSAFHRKDGT
QRPWLSYSPEKQALFCTVCLAYSKDTDSSKFISGMXDWRHTYVRIEEHEKCNLHFQXAECHIMKTLGGDITKLLFHNQES
ARIEQVKRKRAVLERVIDVIKVIGKEGLSYRGANESAASLSNETARHGVFLEFLLILGKYDALLKEHLESVIARANRKSS
GGRSAHITLISKTTVNYVIDSIGSLIKKSVSDDVKKAGTFSIQIDTTQDIGITDVCSVILRYVTESVRERLISIVSLKSS
TGENMFQTVADVLRSNHISMKNCVGRSTDGASNMKGQFNGFASWLKEESSSQVYVWCYSHVLNLVIVDVTGVSEEATSLF
GLLNSCAAFLRESHKRMDIWRERCXDLSHSLTGETRWWSKEVALRKAVGVFKEPSNSLFVTIMETSSRICSHTEDFGLDT
RYKARTLKQSLCRFETILTAQLFLKXFRSTTPLSKYLQTSGMDILQAQRMVSETIKTLHAESRNFRDVLEGAQAFVSWAN
XELSAKEIDVMLESSLPEVRTRLKGKMDGENISDQPMTSNEKFRINVHNVVMDTVVQHLKDRFKTHSHLAADIAYLDPRN
FSHINSNMPDLALRNLCDLINKQGLVGTKVEIQDLKDELRDFAQKWDRLKQSLPKEYETEKEIDSEEEEGQCHTEEPQMP
QIENKMRNTCYNCSVCCYNVLKHYKLYSSAYDNIYLAYKLILTLSCTQVACERSFSTLKNIRTRLGNRLTEEHLESFMLM
SINCDILLRLNYDEIIEGVIARSKTLGRLLTI
>Chapaev-2_CE#DNA/CMC-Chapaev 1556-4030 [Caenorhabditis elegans]
MILQRFSNPVFPPTPSRNSFSTPRVRIISNVEQIPQIKMLRLTIERLKNEKNEISEEIQKRNDEFAVFSEEIQIVRHENI
TIRASNSSLQMEVCNIRTIVSGIEGRLVRSCADVKKSGKAMVLSLQRHAEEVENLKKSAFKVKFSNLRNKSCIKNRFRKA
LHLLQHEICLEDDVGQFIRKFTKFLNSEENQSYKNKLSNFEAVDFLSKCGLSLSQMEKIKNYLTNAIGYDLLPSVKNTRD
LSIQLSMISSFKVSTSFDNKGKVITIVQCMKIAEVLAYRIELLCNSNQFVDDGYTKGVIKIGVVGDAGGGSTKLALVIGN
VSRPNSSRHVMVIAVYDGSDNYSSLKKFIPDVLEQLGKLTKIRYLDKGVQKTAKIVQIATGDCKFQSDILGHQGHSSHNF
CFKCFAQNPRGAEERMKIKDMNVDETFHPRTIDLYKACCENGDLGVRKGCTPLLPHVAIMFYLIPLLHIIMGIFDKYIFN
PLWKYSVTLDNTTCFPILKTRKATLKNAVNLIKSAEEKYQAATGKMKLESHAELKALQSEKLLLDTIVNGTPGGTLEKME
QCWAKFGADKQAWFQSFCGNHLKLLLTPAVVEETFNIFGPNLCPMLLGLKSAMGKLSTIMSLSGNKFLNDSDVLILQNSI
RGFVEDLKVAVPEETIILKLHLLVYHAPQMAKDVRNIGRITEQGVESVHAIFNALERRFCNYRDKKRRYIHVLRELMCRN
IMNDMTMVILVQKNISAFLKTQLFQNTSIPGLSIVPKDATVLPISSQNDLRDPKAVIRDVTAAQKRKNLAKKKINFRSKK
RLPQSTKSRNAVVRFLFFTKSFKF
>Academ-1_AP_tp#DNA/Academ 1920-6332 via tfasty with Academ-1_NV_tp, 1 stopcodon. [Acyrthosiphon pisum]
MNVSDAQCFICDQSLVDGSTVEVERGLDKLINASVERGDGKHEQLQKLSSTKVHVQCRKEYTRPSSINAYKKKRxNEEEV
AAATSPLKKKMRSSQFAFDFKNCCFICGKDADEKKENKKRKELRLKISHVCTLGFEKNIIDVAKARGDEWAKAVQKRVIL
NTDLVAAEAKYHQNCLNKFNLPVPREKKSGRPANEIVAAAMEEIFSFIENNEDSQFTLNELKEAVSDYLPDNKTIKKKLE
EKYGDRIIITTKKTGFTIISFRETHINILNQAWYEKKKIDPNDERRRLLNTCADILRQDIHTKIYETDFYPPSTSLFNDL
DENIPETLIFFVEKLLLKNNKGNLESKKRVCKTICHMIISALGPRSFRSPLQLGLAVYCYRQYASQRLVDILSSLGVCVS
YKEALLYEASSLFHPQPLVSPPEDGCFVQYVCDNADHNISSIDGLNTFHSMGMIKIISPYDKINDSQQIVRLSKIPTKIE
MANVSHIPLKLYNNHGVQGLKTITIKKLNFDQIKVTSIFRNSDVLWWYAKWQADDVVGWSGFMEILTREMIHTKSRILFL
PFINHSASNYNTIFTTLQYITNDGNKDGHTTCVVTLDQPLYLKTREIIATLTGEPMFSNVFVRLGGFHLLMSYLGSIGYI
MAGSGLKEIMSIIFAPNSVDKILLGHAYSRAVRAHTLIQITLSQIIFKEMSFNDEQKEQYKVHLDNFNEELFENIESSKV
IEELKLLFEEKIVELKNRGPTAKLWLQYFEMTALAKEFIRAERMGDWKMHLVCVKRMLPYFHAAGHYNYAKSAHLYVQDM
ENLENTMDNTAFQKFTNNFFSIKRSNKYFCGTWSDMIIEQSLMKSSKSKGGFTRGRSTNESVLNKWVDGLLTASNISEGL
EHFCGLYFHSGEQHVDASDARIKRDAKDVKRLLDWFNFHDPFPYTESIMSIATGVTGDEKINCHVSWSVGMAGMDKKIGS
TFGDVKFQRVDRVLSLLTVNSTVKINDTEIAVDPLLLFQRIIVIKRTNEELRNYLEYELAPYPLSLFDEAGMRKTTKSLF
YDNFEKVKSPPDFQNATYVIDGGLLLRKVVWDMNRTYDDICGKYVDYVQNHFGSKAIVVFDGYENIRNSVKAVEQLRRSS
KSSSVDICFDKQMTVTVSQEKLLSNRKNKTRLISMLTEKFEANNFPVKHAQDDADILIIETAIEQSENGTTVVVGEDIDL
LVILTARTPIDKEVFLLKPGKGMIEQNIYSSRSFNHQGNIKNDVLFLHAFSGCDTTSALFHKGKTAALKLMKKRNDLQIA
AGCFNNSNTSRETISLNGIKFFLAVYGASVKETSINNHRYSCFTKSVGKGKSVKLNLLPPTFEAAQQHLLRVYYQIQKWL
GNELNPLDWGWVMRDNLLWPKTTTQPPAPDCLLHMIFCNCTKGCGPLCGCRRLGLHCSAVCGNCQGLSCLNTEPVEDDQL
EKQTMDDTENPELDETNPADFQQHIDDDEDE
>Q7DJE5_STRCO/160-254 transposon family T12 Pfam:PF01610
VIGVDDFALRRRHRYATVVIDAETHERIDVLPDRTADTLEAWLRENPGVEVVCRDGSATYAEAIRRALPDAVQVTDRWHL
WHNLCETALSEVKAH
>aMIL15 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LQIGSIREVQYPNWVANTVVVKKKNGKDRVCINFTNLNKSFPKDSFPLPHVDRLVESTTLDELLTFMDAFSGYNQIMMNP
EDQDKTSFITDRGIYCYKVMPFGLKNAGATYQQLVNKMFHEHLGKTMEVYIDDMSVKSLKKEDHVKHLEECFEILNQYQM
KLKPTKCTFGVPSGEFLGCIV
>aF15O11/F14O4/T26C18 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVQYPNWLANTVVVKKKNGKDRVCINFTDLNKACPKDSFPLSHIDRLVESTAGNELLSFMDVFSGYNQIMMNP
EDQEKTSFIKNRGIYCYKVMPLGLKNAGATYQRLVNKMFNEYLGKTMEVYIDDMLVISLKKEDNVKHLEECFAILNQYQM
KLNPAKCTFGVPSGEFLGYIV
>aF28H19 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LKIGSIREVKYPDWLANPVVVKKKNGKWRVCIDFTDLVEATAEHELLSFMDESSGYNQILMRPDDQEKRAFITDZGTYCY
KVMPFGLKNAGATYQRFVSRMFADQLGKTMEVYIDDMLVKSAREKDHVPQLRECFKILNKFEMKLNPEKCSFGVPSGEFL
EYLV
>T13D4 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDADIIYPISDSTWVSPVHCVPKKRGMTVVKNDLDELIPTRTIIGHRMCIDYRKLNAATRKDHFPLPFIDQMLERLANHV
YYCFLDGYSGFFQIAIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFSVYGSSFS
SCLLNLCRVLERCEETNLVLNWEKCHFMVQEGIVLGHKI
>T14A11-5 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
MDKGYIRESLSPCAVHVLLVPKKDVTWRMCVDCRAINNITIKYQHPIPRLDDMLDELRGAIIFSKIDLRSGYHQVRMREG
DEWKTAFKTKQGLHEWLVMPFGLTNAPSTFMRLMNQVLRSFIGKFVVVFFDDILIYSKSYSDLIQHLELILKTLRNESLY
ANLKKCTFCSDKCVFLGFVV
>K11J14-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
MDKGHIRESMSPCAIPVLLVPKQDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDKLHGSSIFSKIDLKSGYHQIRMKEG
DEWKTAFKTKQGLYEWLVMPFGLTNAPSTFMRLMNHVLRKHIGVFVVVYFDDILVYSKNLEDHVMHLKLVLDLLRKEKLY
ANLKKCTFCTDNLVFLGFVV
>gi|15724041|gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) [Arabidopsis thaliana] (Gypsy_Ty3-family)
VRKEVFKFLDAGIIYPISDSTWVSPVHVVPKKGGVTVVKNDNDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQM
LERLANHTHYCFLDGYSGFFQIPIHPNDQEKTTFTCPCGTFAYRRMPFGLCNAPATFQRCMMSIFSDLIENVVEVLMDDF
SVYGDSFASCLSNLCRVLKRCEETNLVLNWEKCHFMVRDGIVLGHKIFEKGIEVDRAKIDVMTNLAPPNSVKGIRSFLGH
AGFYRRFIKDFTKV
>gi|15724028|gb|AAL06417.1|AF378064_1 reverse transcriptase (Calypso) [Glycine max] (Gypsy_Ty3-family)
VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDYRKLNEATRKDHFPLPFMDQM
LERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGVFAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDF
SVFVPSLESCLKKLEMVLQRCVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ
ARFYRRFIKDFTKV
>gi|4996365|dbj|BAA78425.1| polyprotein [Arabidopsis thaliana] (AtRE1) (Ty1_Copia-element)
MSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMSVQPA
VSRATTAAQIWETLRKIYANPSYGHVTQFRTQLKQWTKGTKTIDDYMQGFVTHFDQLALLGKPMDHDEQVERVLENLPEE
YKPVIDQIAAKDTPPTLTEIHERLLNQESKILAVSSATVIPITANAVSHRNTTTTTNNNNGNRTNRYDNRNNNNNSKPWQ
QSSSNFRPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTLWQPRANLALGSPYSSNSWLLDSGATH
HITSDFNNLSLHQPYTGGDDVMVVDGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFLA
SFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLS
CLDSLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLVE
NRFQTRIGTFYSDNGGEFVALREYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVY
LINRLPTPLLQLESPCQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRIYIS
RHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPPSSPSAPSRNSQVSSSNLDS
SFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSP
TPPSILIHPPPPLAQIVNNNNQAPINTHSMGTRAKAGIIKPNLKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQ
IGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYVETFSPVIKSTSIRIVLGVAVDRSW
PIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQ
RGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAK
PVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGI
FLKKGNTLSLHAYSDADWTGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELG
IRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIG
VTRVPPS
>gi|29423279|gb|AAO73527.1| gag-pol polyprotein [Glycine max] (SIRE1) (Ty1_Copia-family)
MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGN
SKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACT
ALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYD
LDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTHLK
KHRKGLSVCQSDTESEQESDSDRDVNALTGIFETAEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEA
EKEAHEEEISELKGEVGFLNSKLETMKKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKFAGRTTMTEFVPAKNRTGT
TMSQHLSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVPKHKAVSLVVHTSLRASAKE
DWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNV
NFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLK
IEEGRICGECQIGKQVKMSHQKLRHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVF
KELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNL
WAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVF
NSRTRTVMESINVVVDDLSPARKKDVEEDVRTLGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELII
GDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTN
EEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFAD
PTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQ
QMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMI
GSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSG
GCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKH
IDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGICLLEEL
>gi|4996369|dbj|BAA78427.1| polyprotein (AtRE2-2) [Arabidopsis thaliana] (Ty1_Copia-element)
MATHAEEIVLVNTNILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQ
DKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQGFITRFDQLALLG
KPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINQESKLLALNSAEVVPITANVVTHRNTNTNRNQNNR
GDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAV
NSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLIS
VYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHCSWHSRLGHPSLAILNSV
ISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVDHFTRYTWLYPLK
QKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSH
ASVPKTYWLYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLT
QSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSASNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPP
SSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSYNGPQPTTQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPI
SSPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAANSEPRT
AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETF
SPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDELYMSQPPGFVDKNRPDYFCRLKKAIYGLKQAPRAWYVELQ
TYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGL
HLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTD
DHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEY
RSVANTSSELQWICSLLTELGIQLSHPPVIYCDKCGSNLSMCQSGVSFSDETYRVGLSLHP
>F11B20 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEAVIIYLISDNSWVSPVHVVPKKGGVTVVKNEKDELIPTRTITGHRMCIDYRKLNAATRKDHFPLPFIDQMLERLANHK
YYCFLDGYSZFFQIPIHPDDQEKTTFTCPYGTFAYGRMLFGLHNVLATFQRGMMSIFTDMIEDIMEVFMDDFSVYGSSFE
DCLENLCKVFARCEEKHLVLNWENSHFMVQDGIVLVHRI
>MXE2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGAPVLFVKKNDGSFLLCIDYRGLNRVTMKNKYPLPRIDELLDZLRGATCFSKIDLTSGYHQIPIAEA
DVRKTAFRTRYZHFEFVVMPFGLTNTPAAFIRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLF
AKLSKCSFWQREMGFLGHIV
>T5L23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKRFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNRVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEA
DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLF
AKLSKCSFWQREMGFLGHIV
>T32E20 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
GIIRASKSPFSSPVLLVKKKDQSWRFCVDYRALNRATIPNKFPIPMIDQLLDELHGAIIFSKLDLRAGYHQIRMKVEDIE
KTTFRTHDGHFEFLVMPFGLSNAPATFQSSMNDMLRPFLRKFVLVFFDDILIYSRNEQEHEEHLAMVLKVLEEHQFYANR
KKCSFGQAKIDYLGHII
>F7P1-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
GHIRESMSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSTIFSKVDLKSGYHQIRMKEGDEW
KTAFKTKQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAYIGHFVVVYFDDILVYSKSLGEHVEHLKMVLEVLRKEKLYANL
KKCTFGTDNLVFLGFVV
>T21C14 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LASGIIQHSTSPFSSPVLLVKKKDMSWRFCVDYRALNRVTIPDKFPIPVIEQLLDELHGAVIFSKIDLRSGYHQILMKKE
DIIKTVFRTLEGHYEFFVMPFGLTNAPATFQAAMNNVFKPYLRKFVVVFFDDILVYSSSVAEHVVHLQLVLQLLHDNKLF
ANKKKCMFGVPQIEYLGHVI
>T1J24 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNRVTVKNKYPLPRIDELLDZLRGATCFSKIDLTSGYHQIPIEEA
DVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSHEEHEVHLRRVMEKLREQKLF
AKLSKCRFWQREMGFLGHIV
>T7B9 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDADIIYPISDSTWVSPVHCVPKKGGMTLVKNDLDELIPTRTITZHIMCIDYRKLKAATRKDHFPLSFIDQMLEMLANHV
YYCFLDGCSGFFQIAIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPGTFQRNMTSIFSDFIEEIMEVFIDDFSVYGSSFS
SCLLNLCRVLERCEETNLVLNZEKCHFMVQEGIMLGHKI
>Athila5-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LEAGIIFPISDSSZVSLVHVVPKKGGVTVVKNEKDELIPTRTITGPRMCIDYRKMNAATRKDHFPLPFIDQMLEMLANHK
YYCFLDGYSRFFQIPIHRDDQEKTTFTCSYGTFAYRRMSFGLCNAPATFQRGMMSIFTDMIEDIMEVFMDDFSVYGSSFE
DCLANLYRVLARCEEKHLVLNWEKCHFMVQDGIVLGHRI
>T22B15 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
EAAIIYPISNMSWVSPVHVVPKKGGVTVVKNEKDEIIPTRTITSHRMCIDYRKLNAATRKDHFPLQFIDQMLERLANHKY
YCFLDGYSGFFQIPIHPDDHEKTTFTFPYGTLAYRRMPFGLCNAPATFQSGMMSIFTDMIEDIMEVFMDDFSVYGSSLED
CLENLYKVLTRCEEKHLVLNWEKCHFVVZDGIVLGHRI
>F6H5 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LRIGSITEAKYPDWIANPVVVKKKNGKWRVCVDFTDLNKACPKDSFPLPHIDRLVESTSGNKLLSFIDAFVGYNQIMMNP
EDQEKTAFYTEQGIFCYRVMPFGLKNAGATYQRFVNKIFALQIRKTMEVYIDDMLVKSMTEKDHISHLRECFKQLNLYNV
KLNPAKCRFGVRSDEFLGYLV
>Athila4-8 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)
LDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNEKDELIPTRTRTGHRMCIDYRKLNVASRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFLDLIEEMVKVFMDDLSVYGPSFS
SCLLNVGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKI
>GB:CAB62586 hypothetical protein  (ISa-element) [Lactobacillus sakei]
MAIKYSNEFKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIKQADPNNTKVLSSNERALIKENKRLKEELDILKTSGGAY
GKKLIIKGRALVLEVVNANLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRRHLIKQEVLTAWLRYPMYGYPRLTIL
LNQQSDIHVSQRLVYQQMCELGIRSRMVKRINKPTTQTDYDQRPNLIKQLTDQSGILLTDITYIPLNHTWCYLASVYNPV
TRRVIAYQLNTQMTKELATNVITQVMAQAVKPQIIHSDMGSQYTSDLFENTLSKYGIKHSYSRKGQPGDNARIESFHSIL
KREYVNFQDFKTIHEAIAGIDNYIRWYNSDRISLVA
>GB:CAA35245 ORF2 (ISa-element) [Mycoplasma hyopneumoniae]
MSRKGNCLDNSVIELFFGTLKRECFYGREKEFLTFKQLYKAIANYIYYYNHKRIKDKIKWMSPIKFRETFISNYN
>GB:AAA92735 transposase (ISa-element) [Mycobacterium intracellulare]
MSDAAISELAPKIGVRNACDAVGVAQASYYRRHRKARHRSGRRRSRTPTGCSRVHCPAAERAAILNELHSERFIDTSPTE
VWATLLDEGRYLGSISTFYRLLRQAGESRERRRQATHPATVKPELVAFEPNQVWSWDITKLRGPAKWSWYYLYVILDIFS
RYVVGWMVASRESAALAEVLIRQTCAKQDIGRDRLTIHADRGSSMTSKPVAFLLADLGVTQSHSRPHVSDDNPFSEAQFK
TLKYRPDFPDRFDSIEAARRHCQIFFGWYNDEHRHTGLGLHVPADVHYGTAAIIRDKRAGVLDAAYAAHPERFVQKPPEP
PKLPSGSWINKPDDTEEAIQ
>GB:AAC06202 transposase (ISa-element) [Acinetobacter sp. BM2716]
MKKYTQLSQDERYEIYATLKSKGSIASLVRELGRSRSTIYRELKRNTGQRGYRAQQAAKFASQRRYRPSSSMTAFAFAYI
DYLIGLDWSPEQISGALTQRGWLDVPSHEWIYQYIYQDKSKGGKLHLHLRHQKKYRKRGYKNTDRRGQIIDKTSIHCRDQ
VIDQRQRLGDFEGDTVIGKHHKGALLTLVDRKSLYVHIVHLGSTRASSQTITCALDRLRMSHAYSVTFDNGKEFSEHKRI
TDAGIETYFADPYKSIQRARNENTNGLIRQYLPKSSSFDGVSNEQIEQIEFALNHRPRKTLGWYTPSEVMAGFYTVALAA
>GB:AAC98742 transposase (ISa-element) [Pseudomonas putida]
MTTHYTHLTIEEGVTLMIMRMQGASLRAIAQVLGRQPSTLSREVRRQSQPGHYDASTAGARARALRHVPRRSKLLAPGSE
LFQVVHSMLAKGWSPQQIAARLKDYWPDNPERHVSHETVYLTIYAYPRGELKYRQLIGYLRQGGSKRRTRSSTGHVGERY
PAEQNIRYRPEEVEGRQVPGHWESDLIMGANNRSAVATMVERTSRFCILAKLDAPTADAALEGMTRELSRMAPALLKTMT
HDQGSEMAKHQELSSRTGMKIYVADPHSPWQRGSNENTNGLLRQYLPKGTVLSLVSQERLDEIADLLNTRPRQTLGWKFP
VEVLTDHLQLLATNRLNIIN
>GB:CAA26900 ORF1 (ISa-element) [Escherichia coli]
MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKR
LRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFA
QTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGA
PFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKS
LLHLDALRAKEPELAKAWIFANLLAAFLIDDIISHRWISPPEVPDPKRRTNSLWRITKMVIWSLQVAIRGTVSLTAYKTQ
LKNARHRLNEAPRRRILQMVQPLS
>GB:AAC16616 transposase (Mariner_Tc1-element) [Drosophila simulans]
MSSFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKVHGKPPKRYEDAELQAL
LDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWI
FFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNTARYQQQLINLNRALQRKRPEYQKR
QHKVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDE
FYWRGIHKLPERWEKCVASDGKYFE
>GB:CAA56858 planarian mariner-5 gene (Mariner_Tc1-element) [Girardia tigrina]
MEISEIRILMKYEFHRGATTRQAVGNINSVYPTQAVTQTTVAHWFKRFRSGDFDLSNQPRGRPEIKVDNDALKADVEADS
SQSALELASKFGVAKSTILIHLKQINKVKKLDKWVPHELKDEHKQQRLDACLSLLSRNKADPFLHRIVTCGEKWIMYDNR
KRSSQWLDPDEPPKHCPKRKVHQKKLMVTVWWSSYGVIHYDFMVPGTSITSDVYCSQLDDMMEKLAIKQPKMFNRLTPIL
LHDNARPHSAKNTVAKLQQLGLETLRHPPYSPDLAPTDYHFFQSLDNFFSGKYFTSSGAVKTAFQEFIDSRESVFYTKGL
NVLPLKWQQCVDNMGGYFD
>GB:P34257 TRANSPOSABLE ELEMENT TC3 TRANSPOSASE (Mariner_Tc1-element) [Caenorhabditis elegans]
MPRGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIREYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA
RDIRNELQLSASKRTILNVIKRSGVIVRQKLRPAPLLSADHKLKRLEFAKNNMGTNWSKVVFSDEKKFNLDGPDGCRYYW
RDLRKEPMVFSRRNFGGGTVMVWGAFTEKKKLEIQFVSSKMNSTDYQNVLELELSKYLRHYSRKDFRFQQDNATIHVSNS
TRDYFKLKKINLLDWPARSPDLNPIENLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSMEDRLIEII
RTQGNPINY
>IS4 unknown protein (ISa-element) [Escherichia coli]
MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIML
PGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPAL
YPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNAWSLAGEHRHWMIPLRKGAQY
EEIRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMGDLYSHRWEIELGYREI
KQTMQRSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELM
RDLASMGQLVKLPTRRERAFPRVVKERPWKYPTAPKKSQSVA
>GB:CAA47913 ORF (Mariner_Tc1-element) [Drosophila melanogaster]
MPKTKELTVEARAGIVARFKAGTPAAKIAEIYQISRRTVYYLIKKFDTVGTLKNKKRSGRKPVLDQRQCRQILGVVAKNP
SASPVKIALESKNTIGKQVSSSTIRRRLKEADFKTYVVRKTIEITPTNKTKRLRFALEYVKKPLDFWFNILWTDESAFQY
QGSYSKHFMHLKNNQKHLAAQPTNRFGGGTVMFWGCLSYYGFGDLVPIEGTLNQNGYLLILNNHAFTSGNRLFPTTEWIL
QQDNAPCHKGRIPTKFLNDLNLAVLPWPPQSPDLNIIENVWAFIKNQRTIDKNRKREGAIIEIAEIWSKLTLEFAQTLVR
SIPKRLQAVIDAKGGVTKY
>GB:AAC38614 transposase (ISa-element)  [Sulfolobus solfataricus]
MLESRKEGFSARKFAELIKRHPSTVIYRELKRNSINDVYLARYASDNTFARLDCGTENSKSIQSSGNLLLLKAIPWFMGL
SGNTETLLTSRVHVTKEWEPLKKDLLSCLRHVKKAVKRNWKNLKKILYYRINNYFRCDGPSRSSRKKNTGHWERDLIKWK
DNKSSIRTFIDLKIHGSVSSEHYLMAKGRIRGRGLTEALKYLPAERAKTLTYDRGREMAEHKILEEDLGIDVYFCDPHSP
WQKGTCENMNGLIRQYLPKGIDLNQADQHYLNQVAMSLNTRPRKALVGFTIEKFAQLVVIIRLFKLSHLMF
>Q9ZQK9 /304-464 Pfam PF03108 MuDR family transposase (MuDr-element domain)
DIPPLFDDTEYEAAIMPDIDRADGEDVYKGKVYASKSDCQIGLAIYAIRHMFHFKQTRTKLDSFVLNCADEKCDWRVTAH
EMPESGYYEIRKAKLDHTCSVETRKMYKKKATSRVIAAVYKAQYSEPVKGPVPMDLQKLILEDLRVSASYSKCYRAREKA
V
>Q9ZQK4 /162-295 Pfam PF03108 MuDR family transposase (MuDr-element domain)
SKRTQTMEMIGSAGSLTDLKLELSMLTLAVRQQYTTVPYECWVDRCLWRVRASRQGNDPNFHVYIYDSEHTCSVTERSGR
SRQATPDILGVLYRDYLGDVGPDVKPKTVGIIITKHFRVKMSYSKSYKTLRFAR
>Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)
DKNSISRVILEARSRRKLTRNSPLRLMLRSRRGCTLLLRPGQTTLYLFERLHDSLFKNKEDCTTKLAIHPIRRKFHFIYA
KSCPNIVFAMCVSHTCLWRVYATELEEIDRFEIKCATQLHTCSVDARGDFHKQASIAVIGKLVRTKYLGVGRGPRPNELR
KMLRDEFNLNVSYLKAWRAQEIAM
>gi|15723984|gb|AAL06408.1|AF378029_1 reverse transcriptase [Secale cereale] (Gypsy_Ty3-family)
VRKEVVKLLEAGIIYPVADSQWVSHVHYVPKKGGMTVVPNDKDELIPQRIVTGYRMVSDFRKLNKATKKDHYPLPFIDQM
LERLSKHTHFFFLDGYSGFSQIPVSKGDQEKTTFTCTFGTFAYRRMPFGLCNAPATFQRCMMAIFSDFCEKIVEVFMDDF
SVYGTSFDDCLSNLDRVLQRCEDTNLVLNCEKCHFMVNEGIVLGHKISEIGIEVDKAKVDAIEKMPCAKDIKGIRSFLGH
AGFYRRFIKDFSKV
>Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)
DVRIDYDDIHDIPRSVEVTPHVKEWDDGTCIEIDQEFCSREAVWELVNKAAKQEVFGVNTIKSEPLRLMLRCRQASKGCT
WYLRVARTKKSHFSSVRVHRKVHTCSRSVETTSNNIQRGAPRLIASVLHCDYPGNLETPTPINIMSIVRGRLGVHCSYST
VLRGKMLHV
>GB:CAA40554 TNP1 of transposon TAM1 (CACTA-element) [Antirrhinum majus]
MERGKHKAVEEIMPPKTKPRSKRSRREVFELHRQRETTVLQSNSNNVELYNVASEYVIENGKKKRRGHTCMPKIWGQQPE
NRIVVSFNELGQPNDEKNTSTLAHFLGTIARNGRYCPLNYKDWRLMPNVYKEEMMTVVKARFEIHQGEAYVLESINKKWR
SWKSYLKSSKFDPSIPLEQQLLEIPARVNKDQYKTLLEDWLTDETMKISEQKKESRAKLLFIHRMGKRSTAVQKEIVKKR
LGRHPTRAELFKECYYRTDGSSASAAIYEAIVRMEELAFENPPDSTNSNVPDPNDDFAKVMGKDKYGQPRLYGMGVRTAD
IFGGKPSRATLLRQNMEYKEKYDALNAKIEELTTLIHGKMHSDGQPNVVRTRGVSPVKQSGTSGSLPKIRVGSFVVLKNI
AVINEIVAKGVVCALNNIRENGMDLGRGYCQILIQFIVKADADLSFPHGLLQTVGDVLGVAIACLWPWLLWMRMQNFENA
SLMM
>GB:AAA85003 SpV1 ORF3 (ISa-element) [Spiroplasma citri]
MYSHLSFIDKVKLEQLLLSKIFLKKNGEQNISAIAKYLNRHRSTILREIKRFKTIDEYSAYKSDKMYYEKRKKNNKRFKF
TEEQLNFIHLRFNVYHDSPSELIYRYFLKFKVKFPVCVKTLYKWIRLGFYGFLKQNLRHHGKKYKRKGKSDNRGKLTDFK
SIWDIDNKVSNVGWLEMDTVVGKDHKSAILVLVEQLSKKYFAIKLENHTAREVEKKFKDIIIKNNLIGKIKGIITDRGKE
FSKWREMEIFAETQVYFCDAGSPQQKPLIEYMNSELRHWFPKGTDFNKVSQKQIDWVVNVINDKLRPCLNWISSKEMFLQ
NI
>GB:AAB42161 transposase (ISa-element) [Plasmid pHKK701]
MTYTHLTTDELVMIESYYHQNIKIVKIAEYLKRSRTPIYNVINFLKEGHTALEYYQQYKENKKRCGRRNIVLPKKQQSYI
KEKIAQGWTPDVIIGRKEKPISCSVRTLYRQFKEKVFDESTLPMKGKRKPNGHQERRGKQAFKRNIVERETDYPTFKEEF
GHIEGDTIVGIHHKSAVITLVERLSKIIITLKPEGRKAIDIENTLNHWFGSIPRHLFKSITFDCGKEFSNWKALSNQHDI
AIYFADPGTPTQRALNENSNGLLRKDGLPKNMDFNQVDQAFISSVANKRNNIPRKSLDYQTPLEVFMSYMNEDILSSLI
>GB:CAA29006 ORFb of Maize Ac (hAT-element) [Zea mays]
MQMVQLQIRVKMIWLLFMNHNHNHNHNQNHNHSHNLNPKKKHHRRGQRSAHRMYGSISPRRKLKWRSMERNTFRYGDIAT
FLIARLSIGLRVIMEQADFEIT
>GB:CAA43305 transposase (P-element) [Drosophila bifasciata]
MKYCKFCCKVVTAGVSLVHVPKCSVKRKLWEESLGCSLGGNSQICATHFNDSQWKSTENKGQANKRRRLNKDAIPTKEIE
PEPENVKEGYTSSSTQTECCSLSKENKSLRQTIRAMEYDLQRLRSQLEESRQLEESLGKIFTETQIKILKNGGKRSTFTS
DDISAAICLHTAGPRAYNHLYKKGFPLPSRTTLYRWLSDVEIKTGCLDVAIDLMENDAMDEADKLCVVAFDEMKVAAAFE
YDSSADVIYEPSNYVQLAIVRGLKKSWKQPIFFDFSTRMDADTLNNIIRKLHTKGYPVVAIVSDLGSGNQRLWSELGVSE
SKTWFSHPTDEHLKIFVFSDTPHLIKLVRNHYVDSGLTLNGKKLTKTTVQQTLNHCTKSDVSILFKISENHLNVRSLDKQ
KVKLATQLFSNTTASSIRRCYSLGYDVENACETSDLFKLLNDWFDVFNSKLSTANCIQSTQPYGKQLEFQRDVLEKMTKI
MSSEILGKSQKLPFQKGIIVNNASLDGLFLYLKDKYNMEYLLTSRLNQDIVENFFGAMRSRGGQFDHPTPLQFKYRLRKY
LIAKNTELLRNTGNVEEDNTDSWLNLDFSSKNSENWENNPEDVEPEDDEQTIANNIPADIEMDELTEDAIEYVAGYVIKR
LRTSDCVEQSSTFTYVDEVSHGGLIKPSDQFKNKLKELEKIFLHYTKENFKITKNLKEKLIIAAQNVELDKFVISFYFKI
RIYFRVKYLNKKICIKNQKQRLLGNSKLLKMKL
>GB:BAA83460 transposase (hAT-element) [Oryzias latipes]
MFIGPLEVTSCHIYYHNAQHLDLEIREIITVNQWKKMEEVCDSSAAASSTVQNQPQDQEHPWPYLREFFSLSGVNKDSFK
MKCVLCLPLNKEISAFKSSPSNLRKHIERMHPNYLKNYSKLTAQKRKIGTSTHASSSKQLKVDSVFPVKHVSPVTVNKAI
LRYIIQGLHPFSTVDLPSFKELISTLQPGISVITRPTLRSKIAEAALIMKQKVTAAMSEVEWIATTTDCWTARRKSFIGV
TAHWINPGSLERHSAALACKRLMGSHTFEVLASAMNDIHSEYEIRDKVVCTTTDSGSNFMKAFRVFGVENNDIETEARRC
ESDDTDSEGCGEGSDGVEFQDASRVLDQDDGFEFQLPKHQKCACHLLNLVSSVDAQKALSNEHYKKLYRSVFGKCQALWN
KSSRSALAAEAVESESRLQLLRPNQTRWNSTFMAVDRILQICKEAGEGALRNICTSLEVPMFNPAEMLFLTEWANTMRPV
AKVLDILQAETNTQLGWLLPSVHQLSLKLQRLHHSLRYCDPLVDALQQGIQTRFKHMFEDPEIIAAAILLPKFRTSWTND
ETIIKRGMDYIRVHLEPLDHKKELANSSSDDEDFFASLKPTTHEASKELDGYLACVSDTRESLLTFPAICSLSIKTNTPL
PASAACERLFSTAGLLFSPKRARLDTNNFENQLLLKLNLRFYNFE
>PITG_06960  novel transposase [Phytophthora infestans]
MGVALVVLIVDVFMEFSTWCCYRNGSLLMVGCDTHLIRHYWRPRVNKERGPSVSAKEGWDGLAGRIGRREERERVSVARL
RGIKDQGTPSPVENASPEHTGTPRGGVPTEVADGTVGSVSGKEARREHRVVAGENCHEVAGHVQATVPSGPIGGVPSLVW
NAWPSTRCPETESNTTAPAPAIAVPVPPPAPPVLVNAGEHGPHRATKQPADTGAHTNTATADLTSIAQPTAPRVALPSAT
VPQQEGSPASDEADEGSEDEQESDEEADDSDDEDWSDDNEDEEEDEEASTGESGVSDAAEEEEDISINLNEGKAQELEWL
VCSISQMTRSEKLTSLYTMLGVLMQTDTVERHRGDGKREKFHYYLPLVGRVCRPMFAECLGVTPLTIQRYKKRVREGNIA
AKAHGSTLNKHASVIDLVWLVGEVVPVRVRLQKTANGTVKKYYSSEMYTLLPPTFTWDAIYDEMHTYVEEIRIRVREPAK
STMRQLLTLHCPNIRIRSGRSNVCDLCSIYQSRMRGGATAEQTEGLGKHTLSAREMRDKALVKTTEGKDVVLIVMDYSQN
LTAPSVTSTPSQWYFCSLVSVSVFGIYYENEGKQTNYIYDESVGGKGSEQISSTLQHFIDNVLVPAGKKRLVIYADNCSG
QNKNNYVIKFLLAQAHMEVFESVDYKFFVKRHTKNSCDRGFGHIRKHLARTDCWTLGQIVREVKEAASSNETVHISRDDG
FFKSYKPLLTELYKKLLGVQQFQIFSMDSTKPVVVICKKVPTSIAVEKDLRRKLDGHLTERHKVTRMFSSYLETMPPPPR
NAEKIDQMHRTIRPYVPDEYQSDAIYAAPSKQ
>Q94I85_ORYSA/260-342 (hAT) hAT dimerisation domain, hATC (PF05699)
TIRKDILEPNLPPRQELDIINWWKFAWIKYPTMQKIARDIMTILVTTVASTSTFSTSGRTISPHRSRLTPKMAEALTCMQ
GWS
>PITT_08814orfB  DDE  transposase [Phytophthora infestans]
MPGGTVETDELPTYPAGHVYTVQENGWMDATVWQTYVLNLLKYEIDAPSILLLDNFDSHISEAGQSVVAEKTSAIVVPVP
ANSTYVSQPLDVGVMGPLKKKLTAEWLREKVTATRTAKEKRLASVGKHIYGMCY
>P73414_SYNY3/87-257 transposon family T11 Pfam:PF01609
FREKVRLKAGRNTHPSAGCLDSQSLKKAGTGQETGYDGGKKVNGRKRTILVDTMGLLLDVVVHGAHRSDHQGLILLATWF
APLWQCLQVIWTDSTFGGKDFIYWVEHTFGWNLNVVSKKQGQKGFEVLPRRWVVERTFAWFGRYRRLSKDYEYLPTTSET
MLYVAMVHLML
>Q48354_VIBAN/106-292 transposon family T11 Pfam:PF01609
KYRNKSKGAIRHIAIDSTGLKVFGEGEWKVKKHGAEKRRTWRKLHLAVDIETHETISAEVSLVSVGDNEVLPTLLNPLRR
KIHTVSADGAYDTKSCHETLKNKGCTPLIPPRNNAALWEDGHPRNEAVEALKNGTITEWKSESGYHYRSISETAMSRYKG
LTSGKLSLRCYNAQVGEIMANVKAINK
>Q8T648_BACDO/569-649 (hAT) hAT dimerisation domain, hATC (PF05699)
SLEQYLRQDFVERHQNPLNYWDSKKATFPELYELSNKYLCIPATSVPSERVFSKAGQIINDRRNRLKGEKLDQIMFLNSN
F
>Q9D102_MOUSE/246-335 (hAT) hAT dimerisation domain, hATC (PF05699)
FYRQYAGFNFIAEDGSLSFIDLGSLFIQHALHNNIPCITKLLHIALSWPITSANNEKSFSTLSHLKTYLLRTMGQEKLSS
LALIAVEQEL
>PITG_14842 (Crypton) Cre-like tyr recombinase protein
MRRASRGLDTPAGTIGQEIAAEKMFEDLPTQNMYSLLTAFSIYIQTKKSNKARAADGLLAKSTALGYFSQVVNMLRERYT
NSLGDPKRIAKIRDKMASYIEERNLRANVQTNDAPGCNVDDLSVLVGYLIAKADVATGLKSVHDAALLTMMWHTFGRAVD
TCFARKQQLSISASGELFLHIARIKTSMQCMLHAFGLLFICYDEPSEYLFPLAPNFAESDLPGNKPYSQEEAPPQKRERK
RPNIASYITEVIRDSHSIRRGAAAYANASPKLSIQWISTRGAWLLESLTKAFAYIGTTTKEDQSVAKVLAGYQAPDLPLY
RHVLGFQDARFNVALDVVDCTFASLLMHMDEVRIHIENTTSTSVSSRYMYELHRGIASSNARLGSCITIRTCCEWGAYLR
AHWKTANHVQLSNAVAGNDTLLSSTLNNMLAQIVNISERLASTLAGCLLNWYTNHIWQTVKGKKEQTQRAEAKAAVNIMM
VLYQKPYQVPEEPPRADRLHAFDQKKPTRKASSLRKRWRLLRTSHPEAYRSLGAQYLILKSSGSLVDACTPPSHLWAAVD
LD
>Q8S864_ORYSA/533-623 (hAT) hAT dimerisation domain, hATC (PF05699)
DATELHVELIFLQSFISQEKLGPVEILKFLKRHDCFPNATIAYRILLTIPVTIASAEWSFSKLKLLKSYLRSTMSQERLN
GLAIIALEGGM
>Q25239_LUCCU/497-578 (hAT) hAT dimerisation domain, hATC (PF05699)
EVNRYSYLKINFDVKFKVLQLWESHSSEYPRLYKFAQKILAIPASSAASERVFSAAGNIITEKRNRIGPKTVNNLLFLNS
LC
>Q8S7P4_ORYSA/693-787 (hAT) hAT dimerisation domain, hATC (PF05699)
LEMQLGTFIDDMRRDERFKGLETLAELSIKLVETNKHVLYDWVYLLLKLVLILPVATASVERVFSALSVVKSKLRNSMCD
KLLNDCLITFIERDV
>O07317_RHIME/65-236 transposon family T11 Pfam:PF01609
LVMEEARELEGKEASPTAGAIDSQSVKTTESGGIRGFDAGKKIKGRKRHIIVDTLGLMVGLMVHSADIQDRDGAPDLLKS
IKNRWPWLLHVFADGGYAGDKLKKRLQKIGKWTLEIIKRSDKAKGFEILPRRWVVERTSAWLGRCRRLAKDFEKSVASAE
AWITIAHIRMLT
>Q9ZAA3_MYCMS/157-459 transposon family T11 Pfam:PF01609
LNAKICANTNRKIDVLWFDATTTYFETFSREGYKKPGYSKDGKFKEDQIVIGMATDENGIPLHYKIFPGNVADPNTLIPF
MLEIADIYEVNSVTIIADKGMSVNRNIRFLESKNWKYIISYRMKAGSKQFKEYILDEKDYINDGGLIYKTRDIASSYNKK
RINGHFRRQIISFSQKRATKDKNDRDILIQNFTKKMNKDNLVSCDDLAGSKKYRFFKPINKGAFYELDIEKIQEDQKYDG
YYIYETNRTDLSVKEVINLYSKQWQIESNFKTLKGKLSLRPMYLSTWNHIVGYICLCFISLVF
>T4SA_SYNY3/83-297 transposon family T11 Pfam:PF01609
LKKELSKRKEIKQGELEIFPLDSTIVSITSKLMWNLGFHQVKVFSGINLSTGIPGGIVIHFGQGHDNKYGNETIEETPEN
GVAVMDRGFCDLQRIKRLQKENNKYHVLRIKNNIKLEKLANDNYMVGTGKNKIESRVVIFTHDNSEFRLVTNLPIESKEI
EGVSDEKIAEIYKKRWQIELLWKFLKMHLKLNRLIAKNENAIGIQIYTCIIAYLI
>Q53371_ECOLI/68-331 transposon family T11 Pfam:PF01609
RHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLA
SILPSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKRLTKSNPISC
QILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKSPAYGLGL
RHSRTSSSERFDIMLLIALMLQLT
>Q7N9S9_PHOLL/147-241 transposon family T12 Pfam:PF01610
WLGIDEIHIIKPRCVIANIELQTIVDMLDNNNKATVMRYLTKRKDRYQVRYVAMNMWRPYREAVATMIPDATVIIDKFHV
VRMANESLERALKAI
>Q9RNA5_MICAE/149-249 transposon family T12 Pfam:PF01610
RLGIDEIALVKGQKNYCAVLVNLDTGKLIAILEKRTQEELRETLTGWGKEVLEQIEEVSIDLWLPYKNLVKELMPSAEVV
ADRFHVMKQINQELDEQRKAE
>T1151_CLOPE/93-381 transposon family T11 Pfam:PF01609
IFIKFLYSQNNTLTNLERTLRTYFDRVIINDSISFTLPKEFKKKFPGSGGVASPSSIKVQLQYELLTGSFMNIDIFSGIK
NDVEYLKTMKKYKDYKDLKLADLGYFKIDYLKRLDKSGTAFISKVKSNTSLYIKNPSPEKYKVGTIKKSSEYIKIDIIKL
AEPLAAGETIELTDIYIGSKKELKSRLIITKLTEENKSKRIFNHIEGIKKKRLTLNQRRLDFNSINAYITNVSSNIITMN
QVHELYSLRWQIEIIFKVWKSIFKINQVKKVKLERFMCFLYGRLIALLL
>Q9R757_PASMU/32-209 transposon family T11 Pfam:PF01609
YLKSLMGSCTGISFVDATKLSVCHNRRIKRHKVFEGIAQRGKTSMGWFYGFKLHAIINHHGELLSIRVTPGNIDDREPLR
QGLANDIFGKLFGDRGYVSQDLKDKLFNDFNIDFITKLRRNMKQQILKPIDEALLNGRSLIETVFDELKNLCQIEHSRHR
SFTGFAANLLAGLIAYCW
>Q48566_LACHE/1-178 transposon family T11 Pfam:PF01609
MNKKVDLNGQFLIIDSFPAPVCQPIRNYRAKIFGGYANIGYKATKKIYFYGFKVHAIVSDDGYILDYVVTKASVHDAKET
VELMENTHPSNYYLLGDEGYLGKELHQQLKQMGYELWTPYRKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRAR
SLIGFQSRLEIAILAYNL
>O85803_XANCV/124-312 transposon family T11 Pfam:PF01609
VNAHLARKGQSLRSGTIVDATLIAAPSSTKNPDHARDPEMHQTKKGNQWYFGMKAHIGVDEFSGLVHHVHCTAANVADVT
VTHALLHGKEDSVFGDSGYTGADNREELQTCKAAFFIAARRSVLQAIGNKRERAREQRWEHFKASVRAKVEHPFRVIKRQ
FGYTKVRYRGLAKNTAQVLTLFALSNLWM
>O50546_STRTR/123-317 transposon family T11 Pfam:PF01609
FQEKIESQGMIAHKGQIVDATFIEAPKQRNPKDENELIKANRVPVNWTKNKRAQKDTAARWTIKGNERHYGYKNHIAIDT
KSKFVKNYQTTPANVHDSQVIGVLVDPDEITLADSAYQNKATPKGAELFTCLKNTHSKSLKADDKMFNKIISKIRVRIEH
VFGFVENSMHGSSLRSIGFDRAVLNTDLTNLTYNL
>INSH_ECOLI/137-326 transposon family T11 Pfam:PF01609
INRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLN
QLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKR
QFGFVKARYKGLLKNDNQLAMLFTLANLFR
>gi|158148971|dbj|BAF82019.1| (piggyBac) piggyBac transposase Uribo1 [Xenopus tropicalis]
EIIDFFNLYITEAILQDMVRYTNLYAEQYLASNPLPGFSRAQAWYPTNINEIKRFLALTLAMGLVERNSLASYWDTNTVL
SIPLFSAVMARNRYQILLRFLHFNDNTTAVAPNEPGYDRLYKLRPLIDSLSQRFAEVYTPSQNVCVDESLLLFKGRLKFR
QYIPSKRSRYGIKFYKLCESSTGYTSYFMLYEGKDTNLDPPGCPTKIVWELITPLLGRGYHLYVDNFYTGIPLFRALNSL
DTPACGTVHRNRKGLPRELLDKKLKRGEVHALRSNELLAIKYSDTKVVLMLTTIHDETMIVQHRSGGRPSKTKPLCSKEY
SKHMGGVDKSDQIQHYYNATRKTRAWYKKAAIYMIQMALYNSYVVYKAAVPGPRLSYYNYLLQLLPALLF
>gi|125816855|ref|XP_001336120.1| (piggyBac) piggyBac transposase [Monodelphis domestica]
SLAQIFRQFFSVTTVRVICCNTNINAEKELSKGKKLAWEKLTSDTFLKYIGLLIYMALLKLPRVRDYWRRDSHLSVHFPV
SVMTRDRFMAISRTVHLSNPDDDIENDRKKGTPDYDPLYRLKPLYITIKDTCKSMWQPRKQIAIDERMVATKAKIALKQY
MKAKPIKWGVKLFVLADSSNGYTSDFTIYTGKSRFTSSQGLPYDVVSNLIDPSFLGRGYHLYVDNFYTSPKLFRDLYASG
FVACGTFKDSRKNVRETKQNALTSRSPRGSIRWIRQNKLLFVKWMDTREVSVCSTIHKAFDGDTVTRNVHDKETGSWQIK
NIASPRCVVDYNKYMGGVDLSDQLLQYYSVHKRSNRWYRTLLYHFIDIAATNSYILHKEMCLAAQTVAMSHGQFMEELSR
ELCG
>gi|38347883|ref|NP_941132.1| (TyrRecombinase_Crypton) recombinase [Serratia marcescens]
MIRQFSESELHQQLETFGNHDKQLSRLIRYFSHLRYNTAKTYLHWLRVWNEWYQANARLHTDWPVSSLPVSEEALLAFMG
HLEGKLSRSSINSCLQALNSIHKKGLNLPGIITSEAWYMLEALKQSEARKRKTTKQATPFLIGDLKALIKLRSTTNSVRK
LRDLCLIWTGFETLLRSSEIRRIRLKDLSLDSMTGEFNLTVYRTKTNISTLLTYRLTRQLTNCLLRLMNLVKMDQHSHPD
EYLFQAVNFHDTGYMPPGWKLRSKGNELSELLKRHNLPYRAKQSLLNDEDEEDTVDDAGMLSKNSLLRAFKEMWNELYPN
ETKTRYWTGHSVRVGGAIQLDIEGYSLPQIMEMGNWSNEEMVMRYIRNIEAGKKAMIKLMRNAFDE
>gi|145219423|ref|YP_001130132.1| (TyrRecombinase_Crypton) phage integrase family protein [Prosthecochloris vibrioformis DSM 265]
MQKSDETRQRFLELIERLDGAYAPNTIRAYRADMEEFIGYCDLHGLPALPAEPSTIARFLESVTDIGIKSSSIRRKSCSI
SIIHQLSDLEDPTKSEAVKIAMRKVYRKLGRRFTEARPITRPMLEAMLPDPDGDLRSKRDRALLLIAYDSLRRRQELTSL
RTEDIAYHEDFAIVQLRKNKDDRLSTGHWIRLGSEATLALKAWLEAAGIEEGYIIRGVTNKGEITPELGARQIGRIVNRL
ARTAGFEAEIVQSISSNSLRIGGAQDLLRSGATFAQIMQKGGWDKTDTLLRYLERTRQPGMICEEGLPYRTAAGGEEDIG
DEADNGEQCSCPGYRDTLARRRFQSTLEQMEGAYAPGTLVGYHSGMESFIRYCEEHRLAALPASPMTVADFIGSLSESGI
KSRTIQKKVEAISVFHRLGDHDDPTRASYTRIAMRKVYRKLGRQARQAYGITRPMLEGMMQAAGDRGIHTLRDRALLLLA
YDSLRRRQELVGLRIEDLEYTEDGAVLLLRKSKTDQYGVGHWIHLNPETACALKAWIEAAGLTEGFILRTVDRKGEIKTS
LRNDEISAIYKRLAEAAGLDAAIVGRISSHSMRVGAAQDMLNSGATLTEIMQKGGWMKSDTVMRYIDRTRPPGLVCEDEE
TKPRSEEGS
>gi|78045431|ref|YP_361681.1| (TyrRecombinase_Crypton) putative integrase-like protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
MTRPPAPRPTNEHTKRVRARSPYLVTPQARELQNALQALAAPPEGPLVLADIPVVVLGVRFDLSPEQIERATAVLQDLYK
HDIKPYADNSRKAIRSDWRHWVAFCAQGDRVCMPVQLDDLVEFLNSLIAAGYKRATLEHLLFTLKLASRLWSCTCPTETL
QFRWYWQQQCREQLTARNHQAPALNVETVDNIVEAPTRASGLAGLLELRDMVYVSMSYDLLGRASEMVRLRWSDVRFDAD
VDGGATCTIARSKTDQQGAGVALYLSPRSAHLLDTWQTQRLLAADYLWPAARLEYLHNPYVFHRLPRHKLFKPGPTADAK
RLRWDAHLNVREADRIIKRAAGDQFSAHSARVGAAQDMTRAGMDLPAIMQQGRWNTPTMPARYAENELATRAGKNRQTAL
AKLKNS
>gi|31207297|ref|XP_312615.1| (piggyBac)  piggyBac-derived 1 (AGAP002349-PA) [Anopheles gambiae str. PEST]
SPAECLSLFLDADVIAMITEYTNEQIKAEQPNYARERDANPTDEMEIMALLGVLYIAGTVRDGRENIERLFDTKMGTGLE
AVYLTMTSLRYHFLIRSIRFDDPTAAPDEIEGDKLAPIRPIYERIVSNCQKYLRPGRFLMLDEQAVQFKGKCEFRQILPS
APGRAGFRFHLLVDCETSYVSNLEICVPENQNPYNLSYAPTDVAMRLTEPVQGRQKTVILGAGLTSIDLIEKLYASRTMA
MGEVPKSYPDLPKALIANKGRPEHSTLAAYHDPATLVSYVTRRKEVMLLMSSFVDFDSEEQAGEQDEGEQHLKLVELYNR
TKTTIRTIQQMCAKHNVVRSTRRWPVAVFFNLMNLSAINAWCIYCLNHPEEAKMSRRDFLVTMALELLR
>At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) [Arabidopsis thaliana]
LHPSRRNGAKWFKNNTEVSTRVRKIIEGCFKGPWYSWKKVPIFYKEAWFSTFKTWFEWDASIEHLVKTNFETLAAARLKG
MVSLAKSRGKQPDWILAAHWRVMVAYWRTPIAKERSEKARSSRLFNRDGLGPHCHRSGSRSYAKVQDTLEANNEDSSFIA
VMKKTHQKADGTYVDEKARVIAEKYDELLQERMAQMQLFDGENSTMNPLTIEEKNKIYVQVAGISKHGRVFGLGSLQNGT
SLSLD
>At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) [Arabidopsis thaliana]
LDPKRPPGTLWFDDDPAFAATVRSIFERDFKEPHANWSQTSKATIDRWYETFVQVYNWDRSINKRVRVEFEAKLKSRMTD
QVSRWKGNWKEKGDEAKPKWIDPDVWKGLVLFWQDPKSEKKSNNSRNARYHDPDGKGIYKHRSGQTSYKARARKRCEKTG
EKTPDFLELLDETHRKADGSFIDGKSEEIYKQVTSRIEEEESHMSSGDNPESTGSGGLSVHVKNKIFTEVAPRKKGRIYG
LGSLQFEASSAHS
>gi|115640798|ref|XP_001185162.1| (helitron ORF)  [Strongylocentrotus purpuratus]
MFIAGSNLATPMVRDLCTTVYAEAMPKRCRSLHFSPSKKKKQPSRSNHIASQEAAPEDEGSGPSTEPIHHANHVASQEAA
PEDEGFGPSTEPIHHANHVASQEAAPEDEGSGPSTERIHEAGPEILHIGPMSKICPYCDAMRFPNESLNCCHDGKICLPE
LLPYPNALATLLQGDSSQSKHFRYNIRYYNSSFAFASMGAMMAPPPGRGPYCFRIHGQIYHRSGCLHPPPGEPPKYGQVY
ILEGNLATSTRIQQHPQCNQSTMETIQHIIEETSPYAAAYKCMKQVEDEQMQTSDPQTPVPSVKMIFKRGSDQRRYNLPT
VDEVAAVFVGEDGMPPDQRDFAVYPKNHHLHNISCLSANIDPMTYPLLFPRGDLGWMPNMLHRPEKRTKKRINVTFLQFY
SFRLAVRQSFSAIHRGGKLFQQYIVDAYVKTEANRLQYVKNNQKQLRVAKYQGLMDHLHKEADHANLPLGKVVVLPSTFH
GSPRCMQQNYQDAMAIVAKYGKPDLFLTFTCNPKWDEIKENLLPGQTSSDRPDIVARVFKQKLNNLLADLRQHHVLGRPI
AWIYVIEFQKRGLPHCHMLLMLSEDTKMRNPEDIDNLISAQIPDPDEDSVLYNIIKATMVHGPCGTLNPKSVCMDDGKCQ
KDFPKNFQAETQVSSDGYPLYARPDNGRTLTIKNAELDNRWIVPYSPYLSRKYQAHINLEACMSVKSVKYLFKYVYKGHD
CASVEVQPETTFNHDEVSHFLNTRYVSAPEAMWRLSEYKMHAQSHTVHRLPVHLEDQQNVYFTQGNEESALERAQSHKTQ
LTAWMYSVSPTDQERFYLRILLLHVPGAKSYTDLKTVDGIEAQTFKESCKLRLSCSGFQLPLDNNIPDVPVESAPNLLDD
TNLTLNQEQQAVVDAIMDCLQNGQAQPEPSVFFMDGPGGTGKTTVYNRLISSFHAMNLEVSATAFTGIAATLLHQGQTLH
SFFKLPVPITDGLFIIDEVSMVPKHALDAIDMCLRDIMQCDIPFGGKIFLLGGDFRQVLPVIPRARPATLIENTIKQATV
FQYAKTYHLTQNMRAELEQKDFAEWVLKVGNDQLEVKDTTLPPNSIVLPTEIITNDIVSAMCGSDSTPLEQEAILTPKND
ATFHINAQILQHTPGKSQTYYSIDSIKCDDPVEEHNFPTEFINSLTPSGMPQHKLQLKEGAMIMLMRNLDIRQGLCNGTR
LKVCRLHKNVIDAKIIRSNKRVLIPRIRLSPSDTKLPFQLQRTQFPIRLAFCMTINKAQGQTFNKVGVYLPQPVFTHGQL
YVALSRARSLKSIFVQVHKTHLQGTNHNETHTQNIVFKAVLNES
>model.supercont1.43.5.1 (piggyBac) piggyBac transposase [P. infestans]
NPSGAFFYFMQPDLWESIAEETNTYFRENIDERVDGLHAKQVVRERKNTGYKSKSKEKLRNELESFADITPRELCVFLGL
LIARSIVPNKEKLAHHWRTTDEGAIPRGCFGFFMTRNRFMHLSRNLHFSRNGDERAATDRAWKLRPVIDALQNRFAAGCT
PPSIMAFDEAMLPSRSTFNRMRVYMKDKPHKWGTKLFMLCCSATAYCIRFEVYCGKKERAGGTRSTDYKSGPAAVVRNLR
AVFGPTAPADGSMRLVVTDRFYTAVPLSVQLLTMGFYSIGTVRTDRLGLSTKLIPKKQKGDKKKPPQKPKNRPSNIERGT
YSVAKALQVPDMKVVRWWDTRSVHMLSTCGSVAIDRIVRREKLTGEQQEVACPHIVKDYQTYMGGVDVHDQLRLQRYSLQ
LCIKYKKYYKSLFLGLVDLAIINAFIVYNTRQTKANNPKLTHVKFLKQLHLELCQ
>7000001773487551 (helitron ORF) [Phytophthora infestans]
MGRSKRKRTREELEEALRENELINATPTQEEKEARKRRMNKRRRKRCDLNKALQALSVHQEATAVTEATEGLADRIEERE
EKTEKSDPVVLQRRFAAEMEAAYQAETENMALFTVPAVSEAAVREDVPVSAAQRASDKRANTTLSQADRDRARDAQRART
RRSNMTLSQRDRARKKDAERKRIQRARLRGEELQERREQDRHHVASHREGLTQEQCQHERDLNREQHALRRGQMEGHQRE
TERELDRQRQAIRRAGVTEEERQQELERVRTRRQCTRHGHALISHEDFDVSMIKGNDVVNGRHKLPATAVCPICNAWKWP
GESATSCCLAGRVRLPLLHPAPRKLLQLYGDPEFRRQIRAYNQAFAFTSIGASCSNRSFQNVHQDESVAGTHGVYTYRIQ
GAMGHYLGSLLPHIDRRTGARVAPKFAQIYIVDPDMQHRAERRLGIFADLDRVALLDIEKMMAEHNPLAQRFLHFGQQVR
QHNTEAPVDLVFRLHDNSSRRRTHNRPTVSEVAATLIEDGNLAQPRDLLLFTRDQRLLRLYETHADYDPLQYPLLLPYGE
KGWTYTDEFANGAEYRNKKAMSLREHVAFRLHQKVDDQSALHQGGRLFQQWCVDQRAKCEQEQLRWVADNQKTLRADQYR
GVQDALLNEDTLALAEGEVLLSEYDRAQNRLVHPDRDGCSRGRPTHFLNQVGKRTILPASHLGSPRSMYKSYQDSMAIVR
EYGRPDVFLTETCNPKWDEILEALPSETQTAQDRPDIVARVWQQKLQATLDDLNQGVLGRVRARIYVVEFQKRGLPHAHV
LIILADEDKPRTREIVDKMVCAEIPDKDKNPQLYETVMSCMLHGPCGPANPSCACMKDGKCTKAYPKPLAEVTQANANGY
PVYRRRRRQEGVIKFKGREYDNATINQWVVPYNPYLSQKYNCHINVEVCTDITAVKYLYKYVYKGPDMAILTVEEVRGGQ
KSARREPNEILRFLSARYISPVEACMRLLDFTIQGKTHAVTQLTVHLESGQTICFRETENPEAVLERGSHTMLTRFFELC
ASEEPQNHIARTMLYQDIPKEFCWKAPEKGQPKRWVRRKQYQAAVGRMIHVSPRDMERFYLRLLLCQRRGPTSFEDLRTV
NGIVCPTFQIAAREAGYLENDNEWVSCLREAAEFQMPYQLRQLFVTILVYSAPANVGVLWDRFFADLSQDFARKHQALRD
PFKSALVEFETLMSIQELLQASGYAVADFDELPQLGSFPTLIREALRQNGLLRRELTGYDASALEAIVSTEDQLNESQRV
VYDQIIEAVECPEEGKKLFFVDGPGGTGKSTLLRNILAKVRLSGKIAIAVASSGIASLLLMGGRTAHSTFKIPLKLNESS
TCGIRKNSHIQELIKHASLIIWDEAPMSHRHAFEAVDRTLRDILDNDTEPFGGKVFVLSGDFRQILPVVKNGTPVETIDA
RLKSSRLWPQFQTFRLTENMRVRTADTADTAEEMAAFSEFLLLVGEGRHDVNPSLGKDYMKIPRDMLIENPPVPEDEDQE
IRPGVIPRGIDRIIDEMYGEINNPEVATNEYFANRTILTTTNAIVHRINEAVTDRLTGQARIYMSSDSVQDDGDGNFFEQ
EVLHSMNISGMPPHKLTLKVGMPIMMMRNLNPDLGLCNGTRLRIVALKPHVIHATIMTGERQGQHVLIPRIVFISDGDIR
SFPFHLRRKQFPVQPAFAMTINKAQGQTVQYLGLYLATPCFSHGQLYVAMSRVTSRSRFKALVEYPKLEQEDGVYTQNIV
YRQIFGSE
>Pi_model.supercont1.40.5.1 1381 (hAT) hAT family transposase [Phytophthora infestans]
MEGVTLAVEAKIKDEMPNQFGLVIDGWSHDSEHFLAVFACYEVDGVTKYPLLSMAPLINEPDDDHGAHTHQVFLATMLER
DYGKQVSNCLFIAGDNCQVNKRLATSMGVPLIGCASHRLNLAVQVYLSTYEDDLAQIQALMRKMKTLNLSAALPPLRPIL
RQDTRWGSAYRMVERYFRLAEFLPEDDDEIADLLPTPRTLKRLKTLMVELARVENVSKAIQKDGITMLDVRVWFDGLVEV
EPSFSHYLGARADIVHSPDFEAGCVNVLNGGTAELNRAEKDILQPFERGSSADTSRMTNNSENESFVMQLERQRKRAQQV
QAYHLLTSVPPTSNMVEMFFSLARITFGHERHRLNPYTLEMILFLRVNTTYWDVRTVDSAI
>Pi_model.supercont1.14.6.1 1497 novel transposase Pi-A IRs plus 9 bp TSD
MREILDRFPEVLLMDATHGTNVSKYKVFSFMAHDVFGKGQFVQHCALQNERAPTLLTAIESFKAANPAWTKIQCVIIDKD
FTELAVLKTALPEARVLLCQFHVIKYLSEEVASSDYGFSNWQKKQIRSIVSLLVYAKTEQEYMKHLSYMHQLTRIGSTAA
KGITPSFAEQQASPLSAPDSAQPVPNTAQLVVSDQPVPDSAQLVPDSAQETKVPNAVPQDQQGLHAFAAYFAKNWDNCRQ
LWCAHRRENAVTLGNDTNNRLESSWKQLKDMMHSLMGLDECIASIMFYQTMAEQQFRQKVYKLSVVQHKTYDREMAHVAN
LVSEHVCELIYEQYDYAVHQASYTSYEPYVGMTFIKSTDKDDCALDSWRSEYHINTREWECSCLFMATRLLPCRHVFYLR
KARGLETVIPSQTLNSRWLMSSLRVSTALEDTRREAFAMGTVLQVPEVPWDSNRKFREARHVATTICETISGLGMTEYRL
AMSALAQVSSVIKRREF
>Pi_model.supercont1.1.25.1 1506 novel transposase Pi-A IRs plus 9 bp TSD
MREMFNRFPEVVMIDATHGTNVSKYKVFSVMAHDAFGKGQFVQHAVVRNERNPTLTTALDEFKRNNPAWTRIKCIIVDKD
FTEMSVLKVVFPDARVLLCQFHVIKYLREEIASADYGFTSWQKQQLQGLVNLIVYAKTEREYNKYREYMRHIMVVGRGSS
LRVGLTSSSRLNRRRLDGSGVEVGTVGAELVTDGSELGDFDSELGTGTAELETEATGFDYTSNDALTEPNAFPSHPFEAY
FAKNWDKCRGQWCAYERQNAVTMGNNTNNRIEASWKQLKDLVNSFMTVDKCIASIMCYQEIEERKFIKSAFKLSMVHNSK
YDREMQFLSQLVSEHVCELIYEQYTYAMTRARYKFAEPVPGVILIQHVSDDEDALDEPNAEYSVMKRDWTCSCLYMSSRL
LPCRHVFYLRKALNFENIIPTQLLNPRWLLSFLRSKPNVLFPVEPLKVSRVAQKKNPVWDSNREFREANAIASSISDYLS
GLGMQNYKEAMEALRGVASLFKHGNY
>Pi_model.supercont1.27.10.1 1444 novel transposase Pi-A IRs plus 9 bp TSD
MRSLFKQFPEVLLIDAAHGTNRSKYKVFSFMAHDTFGKGQFVQHSLLQNERWPTLLTALEKFTANNPAWTKLQCIIIDKD
FTDLSVLKKAFPNVAILLCQFHVLKYLREEIASSDYGFSSWQKEQLRGVISLLVYAKTETEYVKHFQYMDHLVEMGKQIS
DYAAPNSVGQVGHRSGLDGQLDQESGLDLEEHGMQSNDAETLPRRDRHPFIAYFVKNWDECRDLWCAHKRQNTVTLGNNT
NNRLEASWKQLKEWVNSFMAVDECIASIMYYQSLQERRYMDEVYKKVNVQHAGYDNEMILVANLVSEHACELIYTQYSYA
LGRASYTFYEGCPGVYFVKSTCKDDDALDELYTEYSVLKRDWTCSCLFMSTRLIPCRHVFFLRRALQMKTVIPTQLMHQR
WLLSSVRSAIDFESTNDSASPVESFAVRRVMIVDERPWDSNRKY
>PITG_09371  Cre-like tyrosine recombinase (crypton) [Phytophthora infestans]
MAIAAPLNNVGDQNLHGRLHVRVCNDRLGRWIPKTPRRIRPPPTQPPRRVRARAGTLDTCKSSSPSAPISGSVSTAPIVS
SITPVELEESAHATLDRCREARPANTIRAYAPKQREFKAWCERKGFHETTRYQVTAAKMHLFLQEEVVDRQVRTKGSARK
VSVATVEMYVNAVSDLYSDQQSRGANSHPHPRNSLIKGLLTSLKRESHAKNKREYADRGVGSLLDGYCTTNDLVSISRYY
MNLNTGSDLRNRMSHFLCHACLLRGESARNLDLPDLFSVILEHEGFTECRALVMIMEQGKTNQFGRREFGSCIRHRNVEV
CPVGALALYLFWRWSVQKEAVPDFLVPERWYDIKLLKSNKDITTPMTYRAHYDATVKAFSALGMRSKAKTHAARGSGARM
AELAGATESQIRRLGRWNASAMEGCYLSSTPRAAKWLEKGEGTLTS
>Pi_copia GAG protein (Copia_GAG) long orf upstream of Copia element polyprotein [Phytophthora infestans]
MSSTQASTADDREFPRLNGRNFIIWMTRVTAALEGKNLLGYVERIDYTGDSDYEFDSDEELNPALSDMNDMSAALDAAGA
PKADEIVGSSPSESSSDASSASSDAPTAGDDGDVEMGQENPPVIQSFTAQKRDELKRAEKLKAKSQRLSSKKLRLNEAKA
KAFLIKTIDDQHVLMVKDKTTAFEIFQTICSKYEGAAIHGDPYHVLSYLMALRYEEGSDLTGFIIDIESAMKVASEATNS
VLSDEQKSLYLYHALPGKWKQQLSVWKGSRKFIPCEELKRHIEAKVQHELAKNRYTLKQGTPESRETRNEQALQALAPEP
TLVQAPYQESKALISTMSCTYCLRTNYDTVDCYVLQRHLQNGQVKAGTVLPANFKLKPSSNQARQHPYKDGFGGKSRIPT
DGYSS
>Pi_model.supercont1.7.16.1 1499 novel transposase Pi-A IRs plus 9 bp TSD
MRLMFEQFPEVLLIDATHGTNASKFKVFSFMAHDVFGHGQFVQHALLQNERRHTLVTAIEEFKQNNPAWTRVQSILIDKD
VTELSVLRAAFPDASILLCQFHVLKYLREAVASSDYGFTSWQKDQLRSTFNLLVYAPTEAAYLKHRRYLRHLVTFGVASG
SSSLLGQVVADSGSVGHLMLDSSSVGHSAGDSGPIGFRVGDADLVQTQAGSDAHNEAEEECDPNLHAFEAYFTKNWDSCR
ELWCAYKRQNTVTLGNNTNNRLESAWKQLKEWVDAFMDLDECIASIMYYQSRQERSFNDQVFKVTSVQHTHYDKEMKHVA
NLVGQHACELIYKQYTFAVAQTSYQYNEVFPGVYAIHSESRSEDALDEPRVSYTVYKNSWTCSCLFMATRLLPCRHVFFI
RKDMKMESVIPTQLLNERWLLTTVRSAVNLAELPRAKFAIVSAPEDASSTWDSNRKYREANLIASSISDTMAGFGMKDYQ
LAMKFFQSVSRIIKHKEFE
>Pi_model.supercont1.34.10.1 1341 (hAT) hAT family transposase [Phytophthora infestans]
LEGLAIKVGQKVEKELEALFGLVFDVWSHAGVHYVTLFAVYEADGKLRVPLLGMSPVADGSQTAHEHAQLFENILDIYDK
TKDMVDFLVGDNCNTNQSVANKLCVALAECASHRLNLAVSKYLAPHESLLSKVSDLMVELRHENNYAELKTHTELLPVKR
NVTRWSSTITMVQRYTRIRAEIKKVVTVEELIPTGAKHRKILDLFEHMKKFESICPRLQRDETDIAEVRVMFDALVTDYS
VMGELLKETAKIVLQPDFETAIVKVINSDERSASTTPRMTWYLLLVKMIPATSNIVERLFFQCKLVLTPQRRSMDTANFE
ELGFLRVSRDMWGVSTVADVT
>Pi_model.supercont1.153.3.1 1366 (hAT) hAT family transposase [Phytophthora infestans]
MAAVCQEVLRTFSEFLPERFGIVFDGWSFKSEHYVGVFAAFGHDGKRETVLLAMAPLLDKEDCNNHPHHDADAHVAFLKT
ILKPLKRRIECVRFLVGDNCSVNGSIASKLGIPLVGCASHRLNLAMTQYLDEYEDILEKINDLMKFLRGLNQSAKLRHKT
PLRPVILQKTRWSSMFDVRECYFKLMPFLDSADDDLAPHMPSPLEERTLADVRALFDSLMEKAPSLGSYLAPQAPIVKFP
IFEMACVQVLNGETRLLTRNSVAALAQFAAPALIQPQHAAANKENKKLSFAEQALKKRKVDAQQQPRYELVQYIPPTSNI
AERFFSQAGIVLSPQRQAMAPAQLENILFLKTNRRYWNVAMVQMVG
>Pi_model.supercont1.56.3.1 1395 (mutator-like) mutator-like transposase [Phytophthora infestans]
HFMRYRLFICSDETCKLLGSCKWVLKALQCQITDKISVFQNSHYLSVSPAYRKPGDLNCAMKRYIKSQAEVELKPATIMH
KTAVDLGLPQTNPKTLLPKVQCFVRTYRNKSKVDNDFVDVMVANAVKHRFRDGCSETTPFTFGFLHDSNGEALIGKGTED
SPLVVGLSTKSLVKRLGRASEFIFHLDATFKLNTRGFPVIVMGLSDMWRQFHPVAFFLVSDLKSPQWTRAIRVLLDSYYD
ISSQSVSFGFVMMDADNAQRNAFESVAGAILASDKQPTYLMCFFHVMSNVRKHTVGFAEANKRIVYRHVYKIHYARTLAD
KKSRIDDALESWKVNTDLQSFSEYFSAQWLEGRYSKWQCLETPTGMAKTNNPCENFNRQLKTTRSMRRLLHLNPL
>Pi_model.supercont1.9.3.1 1440 novel transposase Pi-A IRs plus 9 bp TSD
MRKVFAAFPEVLRVDTLPPSKENTSESSYGVFSLMAHDTLGKWQYVQHAIVESDRSETLRVALDQFKAHNARHARIRALI
VPSDDAPGLIEELRSSFPSARVLYSQFHVVRALHKAIAEHGKDLTSWHRDRLTGIAQLLVYAPTAPVYGANIALMADVLG
SKQHSFFCYYVEMWDSCRDRWTTFAREGVTTFSISEYDGQFASTWQGIFAAVNEEMALDETVAAIQYYQTVVERAFLRDL
NTELSNCNIAAIQSGSGGEEYDAEMRLLAATVSPAASSLVFPQYRYSISRGAYQFFEPTRGSFFVSAVAHNEVFCDDPSK
EFCVEAERGWQCSCAFMTNHRLPCRHVFYVRRITRCSTLIPMEHIEPRWVLTRAKHFFEDNSMEIGRDTGPDHEFSNVVP
HPGAWQKYVTAQEVGKRISQRMMEMDASEFDRALRFYKLV
>Pi_model.supercont1.69.1.1 1591 (mutator-like) mutator-like transposase [Phytophthora infestans]
MLSRMKRHNTGKNSAMPCTACGAGSHHSMRYKLLMCESATCSGVTCSWRGKVLVCSDSGEFYIYELGDHFTASSSPKRAR
LSGRQKEFCRELANQRLRPLRIQHAMARKFQLPADDLPPLNKVQNFCNHYSKTELENHDRLEDLSQWIHSRAYTGSEGDH
DTFTFAWDLDESGKPIIGDGSDEEPFVVGLTTNALVRRLTLPSKYYVLHMDATLKINTAEYPVIVIGISDRARSFHLVAL
FVVSQRLQPIYESCLAALSRLYICITQPILMPRYVMGDAEQAQRNAVFTVLQSNPGMEYLMCFFHVMTNVEKHMKGLPSH
LAGALVRGLYDMHFARDRTSFSYLRDQLLWAWRNYPGLVDFCDYLEAQWLRGPFSMWQCYSTPSGFATTNNPAEQFNMVL
KRDYTLRRRLKMSMLLKELSDSCMHESARQRPFRTEPEAVPTLTRRVGELVREKLLLRNCDADSVVGDAGVVHVFEYPAK
RIVVEGATRTTEEAIAVSAQMGVNYARMEVQNEPPYGWPVRLRRKWCPCNYSFKFGTCVHLIFALRATDRMDGAGRRILV
SRRI
>POPCOP1#LTR/Copia 29-4084 [Populus trichocarpa]
MTSNNNYSQFHMPRLTKQNYDLWCIQYKALLRSQELWELVEDGYTEPREDAVMSNAERQALRESRKKDNKALFTIYQGLD
EATLEMVAPAKTSKEAWEMLSKTYSGVEKTKRVRLQSQRGDFEKLNKEGNETISNYFTKVITLVHQMRRNGENIDDVRVM
EKILRSLDSKFDHVVVAIEESKDLEELTVEELMGSLQAHEQKIDRRGEGRTLEHALQTQLTLKNSNESNRGAFQRGRFLH
RRGRGGRSYRNQEFHGARNQNFNGRGRGRFRGRSRGGYSNWRHNNAGVQCYNCKEYGHFASDCSQYRFEDKVVNFAEKVS
DSEEPALLLACGKFDDSRSSTWYLDTGASNHMCGMKEAFADIDESYKGKITFGDLSQIPVEGRGRILIQLKNGEQKFITE
VFYVPDMKSNILSLGQFLEQDFEVQMKNKNLKIFDETGALIASVKMTKNRMFPLDLNVCMSNCFKAESSNLTNLWHLRYG
HLNCGSLMMMEKHRMVLGIPQLEHTNDLCEVCVMGKQHRKSFPKKSSRASQPLELVYSDVCGPITPTTIGGNRYFLTFTD
DFSGKTWVYVLKEKKEVLSKFKEFKNLVEKQSECKLKNLRTDRGGEYVSHAFDYYCKENGIAHQLTMPQTPQQNGVSERK
NRTIMNMVRCMLKEKNCPKEFWGDAVVCAVYLLNRFTTKRLHMLTPEEAWSMKKPRVDHLRIFGSIAYAKIQDEKRTKLE
DKSQKCILLGYGENSYGYKLFNPVTKKVIMSRDVRFDEEQEWNWSTEEQLQKLVVEEEQMQNDEEEIIINPAPSTSSPAS
PSSSARKTKSIQEIYDATERMNLDDVNMLCLFSGNDPITFEEAYQEDKWKKAMKEEINSIQKNNTWELTTLPEGHNAIGV
KWIFKTKKNAEGEIEKHKARLVAKGYKQQYGVDYEDVFAPVARIETVRLVISLAAQKQWKIFQMDVKSAFLNGNLEEEVY
VEQPAGFVVKGEEEKVCRLKKALYGLKQAPRAWNSRIDGYLSQKGFTKCPYEHALYVKKNLHGRIMFVCLYVDDILFTGD
DPTMIQDFKQSMVKEFEMTDLGLLAYFLGLEVKQCSNGIFVSQAKYATEVLKKFAMEDCDPADNPVEYGTRLTKEGEGDL
VNPTYYKSIVGCLRYLTCTRPDILFGVGLVSRYMERPRSSHLKAAKRILRFIKGTLNYGLCYSSSQNFQITGYSDSDWAG
SLEDRKSTTGFIFFMGETAFTWTSKKQSIVALSTCEAEYIAAASCVCHAIWLRKLMEDLQQKQSEATKIFVDNKSAIALA
KNPVHHERSKHIDTRFHFIREHIKEGDVELVHVNTHEQIADIFTKPLKTEVFCYLQKKLGIVKIDETSLRGV
>PCAL_gag#LTR/Copia 118-1092 [Candida albicans]
MSSAKNDDNEGKVMESVDQANAISKVDEHIKARFNMLFIKFNDLPKLAVGNQKSVDKWNEEFKYFHVAYPDVLEFLLDYN
PKDKFKVKKVEGIYFTGWCLQMCLQSIFDRFRLIMISKLPKHLQKEANLIKAAYDAVTKSKDYTITSKILLKFVNVEHEL
VVCYNLPYLLQVEEKLEEILYNTSNVVDEYVRSLPNLIGQVLYFNHVKKSEALSLFLNIHASYYSKWIQADNDTSVLPSC
STIAEEMCDHPDYARLVDIPSNKYELNLIVSLPAPEKPKGKPEENSLEQSQKKNLKSRKRNKKHPKSDNDKGEKEKEKEK
TSLE
>Retrofit2#LTR/Copia 49-4353  [Oryza sativa]
MASSSKNNTGNPLVGQPVSEKLGKSNHAVWKAQILATIRGARLEGHLTGDDQPPAPILRRKEGEKEVVVSNPEYEEWVAT
DQQVLAYLLSSMTKDLLVQVATCRTAASAWSMIQGMFGSMTRARTINTRLSLSTLQKGDMNITTYVGKMRALADDLMAVG
KPVDDDELIGYIFAGLDDEFEPVISTIVGRPDPVTIGETYAQLISFEQRLAHRRSGDQSSVNSASRSRGQPQRGGSRSGG
DSNRGRGAPSNGANRGRGRGNPSGGRANVGGGTDNRPKCQLCYKRGHTVCDCWYRYDENFVPDERFAGTAVSYGVDTNWY
LDTGATDHVTGELDKLTVRDKYHGNDQVHTASGAGMEISHIGNSVVKTPSRNLHLKDVLYVPKANKNLVSAYKLTSDNLA
FIELYRKFFFIKDLAMRRTLLRGRCHKGLYALPSPSSHHHQVKQVYGVTKPSFERWHSRLGHPSYTVVEKVIKSQNLPCL
DVSEQVSVCDACQKAKSHQLSFPKSTSESKYPLELVFSDVWGPAPQSVGNNKYYVSFIDDYSKFTWIYLLKYKSEVFDKF
HEFQSLVERLFNRKIVAMQTDWGGEYQKLHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLKFWG
EAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCTFLGYSTLHKGFKCLDP
STGRVYISRDVVFDETQFPFTKLHPNVGAKLRAEIALVPELAASLPRGLQQISSVINTPENANVSNENMQQDSTYDNEPE
TETDGAPDTVSANAPAESSGSPPINEPASPFGESDSATASPASAPVNSAPHPDAAASGSSAPRGSTSQGGTPSVAIDDPH
PATTVTGQEAQRPRTRLQSGIRKEKVYTDGTVKWGMLTSTGEPENLQDALQNNNWKCAMDAEYMALIKNNTWHLVPPQQG
RNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGV
LEEEVYMKQPPGYENPSTPDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTIFLLIYVDDI
IVVSSRKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKYASDLLKRVNMSDCKSVATPLSASEKLIAG
KGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVNKVCQFLHNPTTEHWAAVKRILRYIKQCTGLGLRICKSSSMIVSGY
SDADWAGCLDDRRSTGGFAVYLGDNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPAMAQLWCDN
MGAKYLSFNPVFHARTKHIEVDYHFVRERVARKLLQVDYVSTNDQVADGFTKALPVKQLENFKYNLNLGKVVIEG
>RLG_scMaximus_2_2_gag#LTR/Copia 62-2119  [Saccharum hybrid cultivar]
MAQIVFNHVGGKPPFFDGVSSFAHWKRKMTMYLGSIHERVLQVTENDFAIIDPNHLTDEDRANRTCNRMALNTLYNGIDT
KVFEGIKDLELASEVWTRLSETYEGTKVVKSAKLYGLKSEFENFKKKDDETIIEMFHRLQVIVNDLKSLGHKTQDQDFCH
KFLLSLPRRFKMLIMMLQRDGLEAMKPNDLLGEVLTYDKYDQDVDDKEKVEDKKKKKTVAFKAISSKGKATIIEEEDNSE
DEDYEIDDEAFAFVVKKMGHMLIKRRGFKKRNDNFKSNEQQRRCFNCDSTEHLQAECPYDKKKNNKRGKFEKKKKEAKIT
FKKGKNGVYVATWESDDEEEEESSNKAFASIAINKKPLLFDSSSSCFMAKEAKVLYDESDDESEMEYVHDSDNDKYDNEN
DDDDEPTKEQLYDLLQQTRDIAIAKNKECKKLSMKVAILEKVLGELKTTHESLVEDHEDLGKAHSKLEKAHSLLLEQQEK
KEVVVSCDIGVTCDIIDGSFNEPIIISNTNPSCSSSSTTTNSTSTTSDGFTCDASLMVENKTLKREVDELTHALGKAYGG
EARLLKCLGSQRFSLNKEGLGYTPKKGKSAFATPKPSFVKGNGRFCNRCKQVGHLEHNCNKKNQSKNLVNAIPFDSCYVL
TKGVKGVQAKFVGTPIVGPKKKAIWVPKSLVTNLQGPKQKWVPKLH
>RLG_scMaximus_1_8_gag#LTR/Copia 145-2370  [Saccharum hybrid cultivar]
MLGALEPQPKGFPPIRDPANPSGDEEKYDRWNAKAKNALYRGLGKDIFNRVRNAKNAHELWENLCALHEGTKSEREECYH
IALKKINSFEMLPKESANDMYTRLNVLVEDLNALGLTKMSQSDVARKILSVLPVEKYGHIVTVLHQSDLSTATPTQVLRK
INAHEMYMHITPEEGSSSSKKKDLAFKASHDKKKKGQAMMVQESSSESDVDDESLALMVRKTTKMLKKLNKSGIKFDGKK
KKFFTSSKRKPISEMDCYNCGELGHLAHQCPRPPKDKYKNKNKGKKNDSSDEEEEKKKNKPYKKKDGKKKEFHKKKKGGK
AYIVGDWLTDIESSCESSEDESDDEKEKVAAFVMGPSSSPTSSSPSSPPSSPSSSTTHLCLMAKGERKVQNHDSDDDDDS
DSDDEYDSPSYDELVKLLNKYTKIIRRTRSENDDLQNENESLSSKLENTQKTSGELRVQNEVMSSTLKELKTSYKELKDQ
HDKLEKKHDELITRHNSLKDKYTTLKIDYDSLVVANELALETHDATNHVVKCDIATSCDDLIIESIERGSSSKGKSVVES
SNHDDYAKIKSENEKLANENKKLKGLMALEKQPTNESLIEENKKLKQEKEHLKTGLSKFTRGQHLQSELLMNTVMKMDRS
GIGYLANQEKKAKAQQQQSKSKPKPKRCVECGQEGHFAHECKTPPPQPLPKHARPFAFNAHYMLRKDSNGKMKVMFLGPP
NKNRPKKIWVAKSLVEKVKGPS
>INGA_HV_env#LTR/Copia 7406-8872 [Hordeum vulgare]
MFSFVSFLCTFKIHCLDFSCCLFFCFVVYVTGGSARRSNPPRDTASKQFRNTEAPEGSATSGLPPKKKSFKKVAHKDKRV
NIRTMSPKEFLQFRTKNHYLQERETIEGVENVWVKDHCRIYRDVIANFKKNYISVQWIDLAHLQRHTEYFGDALTLIDKM
GLKNIITFKTDFDPTAVAQFYVTVHFSHDEQRSMIWMTGSQKMTGSWSEFMQFLHIDFQGADTPLGLRPHAPVPADKGLA
KDRLQPLYLRKGVLPKHLDIMHRIFRNTLFPRSGNFDEVHGALSGMLLLCEEAMSVESAQLDIADVMFTELWNYIINRKV
PIYGPYLFAYICHKWQQAYPDEVLYAQSDYIVHDPIKLRIKDKWTNPSSSSQQMDTDTETAAGRGPASQPRSAMPSWAIK
LQDKMKTLFCMQAKGQYQSHVAEKQSRQRHKRVLRTLDVDISSGSEDDITPEATWMQAQGYQWSGDEAEDEEETDQEGTD
ESGDPEDEE
>Copia-126_SB#LTR/Copia 36-4413 via tfasty with Copia-26_SB, 1 frameshift. [Sorghum bicolor]
MSTSSSPAPPAAFFPITFLPTNEKLNRANFPSWRAQVLSALRGSQLASFIHPTAEAPSPYLSSEKEKEHSKEPPKPNPEF
EAWMAKDQMVLNYLFSNMSKEILGQVNNEVTAAGAWAAIERLFASQSRARVISTRMALATASKGASSIAEYYGKMKGLAD
EMASAGRKLEDEELVSCILTGLDADYDPVVTAVTARVEPISVAELYAQLVSHEQRMEIRGGGGGHQSSANLASRGGRHNN
GGYRGGGGRNNGARGGYNNRSNNYNNNRGSGGRGGGGRRVPFQPGMFCQICTKEGHSAFDCFKRHDASYTPPQKSASAAT
SSHYGVDSNWYMDTGVTDHITSELDKLTVRDKYHGGDQVHTANGSGMRISHVGHGILRSPNTNLQLKNILHVPSANKNLL
SVNRFTRDNRVFLEFHPNYFVVKEQSTRKPILEGRCENGLYPVRSPNKEALGVVKPSVSLWHHRLGHPAAVIVQQVVHRH
QLPVAQESKNKSVCDACQQGKSHQLPYSRSSTISASAFDLVFSDVWVQLPPLLAKTNYYVSFIDDHTKFVWIYLLKRKSE
VFQCFKDFQTLVERQFDKKIRSIQTDWGGEYQALTSFFQHAGITHRVSCPHTHRQNGAAERKHRHNVEVGLTLLAHATMP
LKFWDEAFLTAVFLINRLPSRVINNETPFYRLYGKDPDYSSLRTFGCACWPHLRPYNTTKLSFHSKQCVFLGYSNQHKGF
KCLDPKEGRVYISRDVTFDEHVFPFASLHPNAGARLRAELALLPDILLNPHSTGDAHLSDHGLFSPLPANGSTVSAGDEN
FVGQNGEEPVPSCSTARGHFMCPPVGDSMAPEADSLGAGSGPGGASASGSGPVPRPRRLPPVLDLLRLNPVLMSQPHNRR
RWPQPDPTAAGATASPAGSDVSSTPVVSPAVTSEPPARPATRLQHGISKPKVRTDGTVRWCQLASTSSDEPSSLAEAQGD
PKWVAAMNLEHQALLRNQTWHLVPPPQGKNIVGCKWVYKVKRKADGTIDRYKARLVAKGYKQQYGIDYEDTFSPVVKAAT
IRIILSIAVSRGWSLRQLDVQNAFLHGLLEEEVFMHQPPGYEDPARPNYVCKLDKVLYGLKQAPRAWYARLCSKLQRLGF
VPSKADTSLFYYNKNGHSIFVLVYVDDIIVASSSSQATDALLADLQAKFALKDLGDLHFFLGIEVKRGRDGLILTQERYA
MDILKRSGMQLCKPVDTPLSPSEKLSIVSGKKLGTDDFTKYRSLVGALQYLTLTRPDIAFAVNKVCQFLHAPTTVHWSAV
KRILRYVKGTTNLGLQIRRSRTMLVSSFSDADWAGCVDDRRSTGGFAVFFGDNLVSWTARKQPTVSRSSTEAEYKALANA
TAEMIWVQKLLTELRITHPPRALLWCDNIGAKYLAANPIFHARTKHIEIDFHFVRERVGQKLLDIRFIHTGDQVADGFTK
ALPAVKLQQFKNNLNLRSG
>Copia-125_AA#LTR/Copia 348-5287 via tfasty with Copia-101_AA, 2 frameshifts and 12 stopcodons. [Aedes aegypti]
MTEKYLFARLNNQNYSIWKTRMEMLLRREERWYVVESAKPEPVTDPWKKDDSKCHAIIVLYVEDSQLNLVKDCKSAKEVW
DCLKQYHEKTTMTSRVSLLKKICSLNLADGEDLEKHIFDMEELFVRLACAGQALEESLQIAMILRSLPDSYGGLVTALES
RPEADLTMSLVKQKLLDEHQRRLERNTNSGDRALKLQQREQKKRLCFHCQKPGHFRKDCRQWLHQQQKKSDGESVSEKAT
KQNQKKKSDVKAKLSAEKDVPICFTVGNGRRKGCWYIDSGCSSHMTNDRSFFFDLDESKQVQVVLADGSVSKSHGIGEGF
VKCIDADGNVLEVKLTEVLYIPALDSGLISVRKLTKKGFRVNFVGSACSVVSAAGKTVALGELNGNLFVLKTVEYANLSK
ELQHLPNCQHMWHRRFGHRDPAVLEKLKAGNLSVGFEMADCGLRQVCEDCLKGKLPRTSFPKSSDNRASRIRSVSKSSRK
HSKRYISEHSSSFxKLFSRKSSSWHQILKQLKKxxKIYSLTINTTKFIKHGKxNLAQNYIFEVSSEDSMVCIEQNVYQTK
xDEKLILSENMFTSHNTQKEDQKNKLLLLKSSIIGTRSVLESHFCxINFxNSVIYSGNYIExHFLLTLLHKYAKKLFQSK
NNFYSLQSFDITINVxKEKKSKNEVLKNRLFSIFVFALKCLLMNFSKYFLHYVIRVVAQNILAxTKTIFSxNLTYLLTYQ
FFQRCARFFSTSVSSLQNYHAKCHFIETISPHHNFxIHCRAFLIKKLFVSSTHYFLDCFECLRLFFDTLLTRLVHTDVCG
PMANVTPGGCRYLMTLIDDFSRYTVVCLLRQKSDVADCIKRYVAHVKTRFGRAPCVIRSDGGGEYVNGVLKAFYEKEGIQ
AQYTAAYSPQQNGVAERKNRTLQEMATCMLLDAGLGKQYWGEAVMTAAYVQNRLPSRVVDKTPFEKWFGKAPKLNHLRVF
GCPAYVHTPDVKRTKFDCKSQKLIFVGYCEDRKAFRFLDPKTNGITISRDARFIEQLSIPHMAKPEAQTSEEIEIELDWP
ESGASQEEAGAQGEQCVQEEQQAAEESDQDSDEEFYDGEMQDQADDRVADPADGAPGEQQNSGKRSTRGMLPSRLRDYVV
DVALVVEDDPVSYEEAVQGPEQDLWLAAMKEEYDNLMQNETWTLVELPAGRKPIGSKWVFKKKQDSAGNVTKYKARLVAQ
GFSQQFGVDYDSVFAPVAAHTTLKVLLTVAGHKQMKVRHLDVKGAYLHGRLKEELYMQQPKGFQQRGQEKLVCRLQRSLY
GLKQGARVWNETIRGILEAMHFKQSSADPCLFTKRTPEGWIYILIYVDDIIVACTSEEEIARVERSLKENLTLSSLGDVS
CFLGIRIRKDVNGFYSMDQQGYILRIANRFNLDRARGSKIPLDTGYYRSREGSKAMPDNKQYQCLIGALLYLAVNTRPDV
AASVAILSRRVSAPTEADWVELKRVVRYLVTTNDYELKLTSKREEPLKLIGYSDADWSADTDDRKSNTGFLFKLGQATIG
WVSRKQTCVSLSTMEAEYIALSEACREVLWLRKLLQDFNERQDGPTTVLEDNISCIDFVAIDRSSRRSKHIDTRVHFAKD
LSEKGIVTIEYCPSASMIADILTKPLGSQKQLQFSEMLGLTKSVGR
>Copia-137_AA#LTR/Copia 72-4085  [Aedes aegypti]
MIPRDNSSSTSQSGGMTGGNSRQIAGGDGSTASGSGVRSTATVRTFGSAVSLPVMEKLKGRQNYASWAFSMKMALIREGT
WRAVKPLENVAVDPDMSDRALAAICLSLEKHNFSLVKNADTAKQAWDKLQQAFQDDGLIRRFGLLDKLTTIKLEDCESVE
DYVDQLVTTANDLSEIGFEVNDQWLASLLLKGLPEYYNPMIMGLQASGIQLTADVVKTKIIQDVKWPLKSSSSEGALYSK
QKIKRTKGGAEKKNGTCFTCKKPGHYAANCPQKQSSSFSKPKGKALCAMLATGEGREEDWFFDSGATSHMTRTVEGFIKH
TDWVHSIDTASSQSIKSVARGTVNLELEEGPIQVKDVWMVPDLTTNLLSISKICAKNMTVLFKFDGCEVRDEVGDIVVTG
TQENGMYKLNTKKSEKAFLTNNSSLWHRRLGHLNQQYMSKLTTMVDGMPRQFGVTADCVACVQGKHTRSSFHCSSSRAQN
PLDLVHSDVCGPVEVSSIGGSRYFVTFVDDASRKVFVYFIESKSQVKEVYEKFKALVERQTGRKLKILRTDNGTEYINST
MKKSFERDGVIHQTTCPYTPEQNGTAERMNRTLVEKARSMLNDVGLPKKFWAEAVSTAAYLVNRSPTRSLETTPEEAWCQ
KKPDLKHLRIFGSQVMVHCPKQKRQKFDSKSVKGVFVGYAENSKGFRVYDQERDEVIISRDVVFINEEQKFQPKDVGEQY
QDQPVEFIELLDWSETNAHPENEGLNVQQPARNQEMSSSVEIAEASTALPPQSGRSADEQQGFRRSGRERQPPGKYSDFM
CFSSITGPDDFTDPTPMASEMADDPSNYTEAIERSDRERWITAMREEIQALTENETWELTDLPNGRKAIKNKWIYKTKRG
SDGTVERFKARLVVKGCSQRYGVDFDEVYSPVVRYSTIRYLMSLAAQHNLDVEQMDAVTAFLQGKLADEVIFMEQPEGFV
QNPKKVCRLKKALYGLKQSSRVWNLQLNEALREFGLERSLMDTCLYFKIDGESMTFVTIYVDDFLLFTNDSEMKKKLKTF
LHSRFKMKDLGEAKFCIGLKITRDRVNGKIWLDQQQYVKDVLERFNMANCSPVSTPVDPGAKLNKSMCPSEPKEVQSMQA
IPYKEAVGSLMFIAQATRPDISFAVNMVSKFSSNPGRRHWEAVKRIMRYLKGTSNNRLEYSVTGNPHFTGYTDADWGGDE
DRRSTTGYVFSKMGGAISWNCKRQDVVALSTCEAEYIALSRTTQEALWWQQMLQQINGDLQVPILCDNQSAICVARNQGY
NPRTKHISIRYHFVREALDRGDITLDYVSTKQQPADGFTKPLTRQNHEAFKKLLGIVG
>CPSC4B#LTR/Copia 106-4455  [Oryza sativa]
MSLPTPRVSHSPPRRRWRSPSPRRGRHGGRGQVVVERVVREATTSSVVYPTLTRTNYQDWALVMRVNMQAQCLWGAVEPE
GDDLVDYRQDQQALAAILRAVPAEMLATLAVKETAQEAWEAIKTRRIGVQRVREANAQQLRREFGDILFKDDETVDDFSM
RIGGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQRKQCKTAAASSRVDANG
RLLFTEEEWLAKFRKAASLQDAAHSSSGNGDRRGRGRGKKDDGAPKEAQPKPANPGGRNPGNCKNCGKRGHWAKDCRSKP
KAQQAYVAQEEDEEPALLLAKVQLDPPRPRVAAPTNVVSPPSAPRAPSPIGELAVVEAKVFAQLDDGGEHDPAMWILDTG
ATNHMTGSRSAFAELDTAVTGTVRFGDGSVVRIEGRVTVLFSCRFGEHRGIAGVYYIPRLTANIVSLGQLDRSGSKVLIH
HGILHVWDPRGHLLVRVRRSDDCLYTIKLDIDRPVCLAARSAEPAWRWHARYGHLNFPALRKLAQQEMVRGLPLLQQVTQ
VCDGCLLGKQRRAAFPTQSKYRADEHLELVHGDLCGPIEPATPAGNRYFLLLVDDMSRYMWLTMIRSKDEAANAIKHFQA
RAEVESGRKLRALRMDRGSEFTSIEFGEYCANLGVGRQLTAPYSPQQNGVVERRNQTIVATARSMMKAKGVPGRFWGEAM
STAVFLLNRSPTKSLDNQTPYEAWYGQWPAVHFLRTFGCVGHVKITKPGLKKLDDRSAPMVLLGYEQGSKAYRLYDPVSE
RVHVSRDVVFDEDIAWDWGPVTPDGAPQLEPFTVEQVVTTTIGTAPASSPTPPSPPSPAPSAPTTPAPPSPPSPEAVEFV
TPPTQDSILDADADDDVVPRYRLVDNLLGNASPPGHAPRVLEQLELHVVSADEPASLAEAEADPSWRGAMQDELNAIVDN
DTWSLTDLPHGHRAIGLKWVYKLKRDEQGAIVRYKARLVAKGYVQRQGVDFDEVFALVARLESVRLLLAVAAHQGWQVHH
MDVKSAFLNGELLEEVYVSQPPGFVDDNHKNKVYRLHKALYGLRQAPRAWNAKLDSSLLSLGFHRSSSEHGVYTRTRGGR
RLMVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNPCQT
PMEVRLKLRKGSDFPLVDATLYRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGP
GARCALPMLVGYSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKQKVVALSSCEAEYIAAAAATCQGVWLARLLAEVLG
DEITAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRECAEKKLIEMMFVGTAEQLGDIFTKSLGRTRFQELRSKIGV
CSLDKSSQT
>Copia-140_SB#LTR/Copia 103-3936  [Sorghum bicolor]
MELWLTAMSCYHAAEGKPANLSPEDEAKFKADDNLFRGAVISALDPKFQKSYIILPSGKELWDALVAKFGVTDAGTELYL
MEQLYDYKMVENRSVVEQAHEIQALAKELELFPCPLPDKFVAGGIIAKLPPSWKEFATSLKHKRQEFNVEELIGTLDVEE
RARAKDNGKGVEPSTANVVQKNFHKFNKKKNQKKKENNHKPNQSTQFKKTTNNNKKKGGCFVCGSEEHWASECPDRKFFQ
GKKSANVVTTETVGTSGYGNSLPYVLSVCNSPEWWMDSGANIHVCADVSLFATYQVGRSGALLMGNGSRAHVLGVGTVIL
KFTSGMTVPLKSVQHVPSIKKNLVSASMLCRDGYRVVLESNKCVVSKHGSFVGKGYDCGGLFRLSLHDVCNKLVNSVDIS
DESDLWHSRFCHASYGCLMRLANLNLIPKFNLVNKSKCHVCVESKQPRKPHKAAEARNLAPLELIHSDLCEMNGILTKGG
KRYFITFIDDSTRFCYVYLLKTKDEALHYFKAYKAEVENQLERKIKHLRSDRGGEYFSNDFDEFCVEHGIIHERTLPFSP
QSNGIAERKNRTLTELVNAMLNTAGLSKEWWGEAILTACHVLNRVPTKNKEITPFEEWEKKRINLSYLRTWGCLAKVNVP
INKKRKLGPKTVDCIFLGYAFHSVGYRFLIIKSDVPDMYVDTIMESRDATFFENEFPMKNTPSKISHETIIPHEQELSIP
IDHAEETHMHIPEEDDTIVTRKSKRQRIAKSFGDDFIVYLVEDTPTTIVEAYSSPDADLWKEAVRSEMESIMSNGTWEVV
DRPYGCQPIGCKWIFKKKLRPDGTIERYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRTLIAVAASYGLIIHQMDVKTA
FLNGELDEEIYMDQPEGFIADGQESKVCRLLKSLYGLKQAPKQWHEKFDSTLIAAGFVVNEADTCVYYRYGGGEAVMLCL
YVDDILIFGSNLNVIEEVKKLLSSNFDMKDLGEADVILNIKLIREGDGGVTLLQSHYVEKVLSRFGFSDCDPAPTPYDPS
VLLRKNRRIARDQLTYSQIIGSLMYLASATRPDISYAVSKLSRFVSKPGDDHWRALERVLRYLKGTMSYGIHYTGNPRVL
EGYCDANWISDADELYATSGYVFLLGGGAVSWKSCKQTILTKSTMEAELTALDTAGAEAEWLRELLMDLPVVEKPIPAIS
MNCDNQTVITKVNSSRNNMKSTRHVKRRLKSVRKLKTSGVITVDYVHTSNNLADQFTKGLSRNVIESASREMGMRPTS
>SBCopia1#LTR/Copia 74-5464  [Sorghum bicolor]
MAGRAPPPPPPLPYLQQFPALPYPSWARAAAGGQPRPPLQQPAGADVAARGEAAMHADAQPADAARPSLLLAAVAGAEPD
AAAAVAAGGQPRPPLQQPAGADAAAHGEAAMAAARAAAARGAHQDRTPVDGTRADAAEDAAAASELQLGTNDAAAAAAYA
RGAAAAIAAGLGMPLDMTDLPRTLLIAGGALSRGLAAGPRAAVGAAPFPAPPPPPVMHRPDSTLIAALVTARAAAAEGRA
RVREAALAWERERDAADALARQIADAEQFLGLPASPDVGTTSSGSTSVVWHDPADPHVVQLHYQAGGVQNIRLLVPVVLE
PESPSYARWRDLVLLTLRRYALDDHVLLDTAGAVPTPSWLRLDSVVLSWILGTISLDLHDLVRNTPSARGAWLALEGQFL
GNAEARALRLDASFRTFVQGDLSVSEYCRQMKGMADSLGDLGWPVEDRILVLNVLRGLSDRYSYLRTWITRQRPFPTFLQ
VRDDLVMEELTQGLQPGSTSASGSSSSSSTALAATPPPRLAAPPQSSLLGPLPPGPSGGGGGRGGRRRRGGGRGAGRGGN
TTPLPPPRGAPWPSYNHPWSGRISMWPFQASGGEPRPPAAMLAGAPPGFPSVTPWAAPFPAFSWATPPTPLPGSAGWDQA
ALAHSFSTMALTPPVGPEWVADSGATYHTTPNPGILSSVRPPSPSLPSSIMVANGSCLPVTSVGAAGPHGSFRLPDVLVA
PSMVHNLLSIRRFTADNSCSVEFDSSGLTVKDLASRRPLLRCDSTGPLYTLRFPASASPPSPVLSAAFTTTTSTTWHRRL
GHPGRDALMQLSRSSDIRCTRAHDEHLCHACQLGRHVRLPFSSSSSHAARIFDLVHCDLWTSPVISISGYKYYLVVVDDY
SHYSWTFPLRAKSDAFPALVHFFAWVSTQFGLTIKAVQCDNGREFDNSTSRAFFLSHGVQLRMSCPYTSSQNGKAERMIR
TTNDTVRTLLLQASLPARFWAESLHTSTYLLNRLPSAACPAPTPHHALFGTPPRYDHLRVFGCACYPNTTATAPHKLAPR
STLCVFLGYSPDHKGYRCYDLTSRRVLISRHVVFDESIFPFSTTTTPASTSEHDLSSVFPTDPVVEPPFPVFPAGTATSP
VVRDTSGPLPCPGPEVSPSGPAPAPDAGPGSAPSTSAPPVRFAQPVRVYQRRAPDVGSVPSTPAPPARFAQPVRVYQRRA
RLAPLPPAAPVAPSSLGSPAPSATSSPPATPTPPPRHPATRAVTPVYHPPLLHRHPRHVHPMVTRHAAGTLQPRALAAMP
GDSQVSPVPSSVREALLDPHWRRAMEEEYAALLANQTWDLVPRPPSSNIVTGKWIWTHKRRADGTLERYKARWVLRGFTQ
RLGVDYDETFSPVVKPATVRTVLSLALTRGWPVHQLDVKNAFLHGVLTETVYCSQPAGFVDSSCPDMVCRLKKSLYGLKQ
APRAWNHRFAAFLLTLGFVEAKSDTSLFIYHYGAETAYLLLYVDDIVLTASSESLLRRIIASLQQEFAMKDLGQLHHFLG
VTVEPHPAGLLLHQRQYTLDILERAGMTDCKPCSTPVDTQGKLSEAEGTPVTDPTAYRSLAGALQYLTFTRPDITYAVQQ
ICLHMHDPREPHLTALKRILRYLRGSVDFGLLLHRRSSSTELVVYTDADWAGCPDTRRSTSGYAVFLGGNLVSWSSKRQP
VVSRSSAEAEYRAVANGVAEASWLRQLLAELHSPLSRSALVYCDNVSAVYLSTNPVQHQRTKHVEIDLHFVRDRVAVGDV
RVLHVPTTSQFADIFTKGLPSSTFAEFRSSLNITSG
>TDH2_gag#LTR/Copia 35-1045 [Debaryomyces hansenii]
MSEQFTYSDPTHVKHAKTVNNRVYESSNEEEMGSKTYKIHHSKSSDVINKFDSSSLLKFNQKEIVDNAIEQAKELYQCYF
EKIPFVHVNDVSTLLLLQNAFNKLLSNNKGLGKLLLINDPTIQDYGKVKMSSVYCQNNNLQIWFPVFRELLSQSLFHKTL
AIQKYYPEYVFSLNYTYKYIRDNREVFVSEILLKLINFYIHAMDNPFMDVTDISATATYGTGQEIDLEINDFIKKLDLYR
IILIYKRLKTNIKNLEAFIDELTFAYLEFPNNNNLLNLDQIIVNLKRNTRFIKPKYFQEKTDNYSNRFDNNKKKQLKKNN
KYEHRNQNSSKDNDEN
>TAR1_TA_pol#LTR/Copia 8-3141 via tfasty with RIRE5_OS_1-3927, 2 frameshifts and 2 stopcodons. (fragment) [Triticum aestivum]
CRSTDHWAPSCPNRYDKRHPRKGGKTANVVIGDTDMKDAGYGIFPTILSVCHSPNWLIDTGANVHVCGDISMFSSYQAAG
TSTVLMGNGSSASVRGVGTVDLKFTSGKIVRLRNVHYVPSVNKNLVSGSLLCRDGYKLVFESNKFVISFSLSDVCNKVVN
HICNNSESNVWHSRLCHVNFGCMSRLAKLNLIPSFTTVKGSKCQVCVQAKQPRKSHVTAETRNLAPLELIHSDLCEMNGV
LTKGGKKYFMTLIDDSTRYCRVYLLKSKDEALNFFKIYKAEVENQLDRKVKRLRSDRGGEYFSNEFDAFCAEHGIIHERT
PPYSPQSNGVAERKNRTLTDLVNAMLDTSGLSKAWWGEAILTACHVLNRVPTKNKEIAPFEEWEKKRLKLSYLRTxGCLA
KVDVPIPKKRKLGPKTVDCVFLGYAFHSIGYRFLVVKSEVSDMHVGTIMESNDATFFEDIFPMKNMATSSNQEMPSSSNQ
EPVTITEPAILMEHFESPVEENNEVPTRSKRQRTAKSFGDDFLMYLIDDTPSSISEAYASEDADYWKEAVRSEMDSILAN
ETWEITDRPYGCKPIGCKWVFKKKLRLDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLIHQ
MDVKTAFLNGELDEEIYMEQPDGFVIDSQEGKVCKLLKSLYGLKQAPKQWHEKFERTLTTAGFVVNEADKCVYYRHGGGE
GVMLCLYVDDILIFGTNLNVIKEVKDFLSRCFEMKDLGVADVILNIKLLRDDDGGITLLQSHYVEKILSRFGYSDCKPSP
TPYDASVLLRKNQRIARDQLKYSQIIGSLMYLASATRPDISFAVSKLSRFVSKPGDVHWKALERVLRYLKGTANYGIHYT
GHPKVLEGYSDSNxISDADEIKAMSGYVFTHGGGAVSWKSCKQTILTRSTMEAELTALDTAAVEADWLRRLLNDLPVVEK
PVPGILMNCDNQTMITKVNSSKDNMKSSRHVQRRLKFVRKMKNSRVIALDYVQTSKNLADPFTKGLSRNVIDNASREMGM
RPTI
>TONT2_PV#LTR/Copia 160-4075 via tfasty with TONT1_LE, (1 frameshift) [Phaseolus vulgaris]
MAENPNNNDNTAPETSNVVSATQTIFAKLFPDVSKIEVFTGQNFRRWQERVSTLLDMYGVAHALTTAKPDSTTAAKQVDD
WIHANKVCRHTLLSVLSNDLFDVYASYKNAKDIWDSLILKYTAEDIVRQRFVIAKYYRWEMIKGKDIKIQINEYHKLIED
IKTESIKLPDEFVSELLIEKLPQSWTDYKQQLKHRQKQMSLSDLITHIIIEDTNRKECAAAKAKALSAKANVIEDKPAPK
RYEKKFDHKKKPNNKFSRPSGTNPTFKKKGNCFVCGKPGHHAPQCRHRAKNDYPPKANLAEGEDTIVAVVSQVNLVTNVS
KWVVDSGATRHICANRNVFTSYTSVGDGEEQVYLGDSRTTPVLGKGKVLLKLTSGKTLALNDVLHVPSIRVNLVSVALLS
KVGVKVSFESDKIVITKNNVFVGKGYCDQGLFVLNISEIMNESTSSAYIVDSYDIWHARLGHVNSSYVIKLQRLGLINMH
DKESSKCDVCVESKITKKTCHSVENLGLIHTDLADLKQTMSRGGKNYFVTFIDDFSRYTKVYLIKHKDEAFDMFLTYKAE
VENQLNKKIKRIRSDRGGEYVLFNDYCVKEGIIHEVTPPYSPESNGVAERKNRTLKEMMNAMLISSNAPDNLWGESLLTA
CFLQNRIPHRKTGKTPYELWKGYQPNLKYLRVWGSLAKVMLPDPKKRKIGSKTSDCMFLGYAEHSAAYRFLVLNSDIIER
NTIVETKNAEFFEHIFPLKSSGTSEQPIDSVSDTLSEDVRRSKRQRKETSFGNDFYTYLVENDPISFVEATSAPDAKHWD
KAIKTELESIKKNNTWTLVDLPKGAKPIGCKWIFKKKYHPDGSIEKYKARLVAKGFTQKHNIDYFDTFAPVTRISSIRVL
LALASIHKLVIHQMDVKTTFLNGELEEEIYMTQPEGCVVLGQKEKVCKLLKSLYGLKQAPKQWHEKLDNVLLCEGFSTND
ADKCVYSRSENGEYVIICLYVDDMLIFGTCNDIVFKTKLFLGSKFEMKDMGEASVILGVKIIRKGDSILLSQEKYTEKLL
KKFGYYDFKSVSTPYDANSKLKKNRGESISQTQYAQIIGSLLHLMSFSRPDIAYAVGRLSRCTQCPSQDHWEALARLMKY
LRGTMDYAIEYSGFPAVLEGYSDANWISDSDETKSTSGYVFTLGGGAVTWRSARQTIIARSTMESEFVALEMAGSEAEWL
KNFLANIPLGMKPTPSVSMHCDCQSAIAIAKNKSYNGKNRHIQLRHNLVKQLLKSGTISIDYVKSERDLADPLTKPLGRK
MILETSRGMGLKPLANKQEMETQPL
>TSE1_gag#LTR/Copia 23-1123 [Kazachstania exigua]
MDNNPLKGSPRTPIPGSQEPIRNPGETVNPKATPIYNEDPRIFYQKFGSPMFVNPAMFANPFQQAEFMYQQIPHWAMPNM
LGHQQLPQHFTGGRIPSASSETVNESVNNNQFTQQEIAPTATLNRINDQSEFSTWIKNFIIFLRERKLEHVIPPENGQST
NSATDEEKKFITDVFKYFVSPKAYPAWFSKQSQERFIELYDVIENALYKETGYDNERSIAKELNSIYYDGKTDPFFFQKK
LNNLRKKGLEIGVTTTDTILCERIVDHLSGPFKPIADNYDRNYTNISLTDLLDEIQRVYNRQIRDKTYTNKSNSNSTDYK
PTTKSTLEKQVINKSTQKAASKGRNKKLFHIQDVDSSIEDLRQFRK
>TORTL1_env#LTR/Copia 6835-8449 via tfasty with gi|113205345|gb|AAT, 3 stopcodons. Distant similarity to Copia4_MT_env and SIRE1_env [Solanum lycopersicum]
LFKGDLPNHRASESNILAASEELVIESLAMMSEEARAEHNDALEREEVSPSQPIFDKTPDLGRYSSSSSSESASEEAPLK
WKLESRKGKEKVVEETPKRRPNTRSAAQKLMVDALRASARSAAAVRSARTFKVSNFKIPKGKIGxVVWRRGxKEKxQEEV
RKEKGKGTKKVEKSQSKGKKSERKRKRTQEPGPQARKVENVNLQEVVDSLRKQAVLAGRVFDMGIITPPGMDSLHDMVEI
QSWLHLFNKKSPILHEEEVREFYYNVQFLEDGSLLTRVNNVAISLNEEVFGKILRVPIEGTRSVQGKTCSSEFASLISKT
PTTKVAGIYKKIMKSDYQLVFEFVNKVILPRTEKRTLATAADLRLCSFEALCLPSLMIEHIYKTVIERKGVHGMGYGYFL
TKVFKHFQIPLGVGKVGTVKQTISEHTLFECECIEGRGLPKSKMAQLLEDLDQLKHETEELTVRLSSKEAEIVVLKAELL
TAQSEVPGSSVVQALEKENNELKAMITALQEKAIKDNDAANARLTLAIQSLSKTPPSS
>SHACOP21_MT#LTR/Copia 51-4049 (1 stopcodon) [Medicago truncatula]
MATSNSNSIFSYTTNQIPVFNCEHYDYWNSQMETIFISQDLWDVVEDGYEERPIQRNASSIAEKENEYKENVKKNATALR
IILQGVSKAIYPRIFGVKKAKDAWDILKTEFQGSSKVISIKLQSLWGQFENLAMKEGEKVKDFFSRVTEIGNQIKSCGEQ
VPEKKVVEKILRSLPQKFEHVVAVIEETKDLTKLSQYKLMGSLEAHEERVNRYNNQPLENVFQAKMNIRSSNSRQEGSGD
SFRGHPSNIGHGRHYGYKGRGGERIRGNSNSYCFICKKSGHESKDCRFRCTRCKIPNHSSRDCWHKKKENDERIKGINFS
AKDDANKLFSTMINDKKSGEMWFLDSGCSNHVTGNQTIFEELNKNYSSHVELGDGKHVKIEGKGVIAVHTSQGNKQFIHD
VHYSPNISQNLLSVGQIMKRGYKLIFDDDKCEIFDKKSGEHIVTVLQTPNNLFPLNMKSFQPAAFSSKSTDDFYLWHLRY
GHLNNKGLQLLKQKNMVVGLPEIKTDNAVCEGCIYGKMHRVPFPKTAWRSQAPLELVHSDICGPTRTPSLGNKRYFLLFV
DDYTRMIWIYFLDKKSEAFTKFLHFKALVENQSGCKLKTLRTDRGGEFIYKPFLNYCKEQGISRQLTIRHTPQQNGVAER
KNRTIVEMARSMLKGKELPNSFWAEAVNSAVYILNRSPTKAVRDRTPFEAWHGRKPVVSQLKVFGCIAYSLVPAQNREKF
DGKGEKLIFVGYSDESKGYRLINPTTSQLVISRDVIFDESAAWKWEVEDVVQTPMVPVEFKQSPLNVVEPSRNNSHEDDS
DSETPPRKFHSLEEILESCNVTFFAQEPQCFEEAIKEKVWREAMDVEMKSIEKNRTWQLVDLPKGKDAIGLKWVYKTKYN
EDGSVQKYKARLVAKGYSQQPGVDFNETFAPVVRMETIRTVLALAAQLELQVFQLDVKSAFLNGELEEEVYVKQPQGFEV
EGKERKVYKLHKALYGLKQAPRAWNSKIDAYFLQNGFVKSPSEPSLYVKRSGVNFLMVCLYVDDLIYAGTNHDMVQSFKE
AMMKEYEMTDLGLMKYFLGIQVKQTKGEIFITQEKYIHDLLKxFRLESCKPVSTPMALNEKLQLNDGAEKADPKAYRSLV
GSLIYLTNTRPDIVHSVSLVSRFMNEPSKLHFAAAKRILRYLQGTKKLGIKYVKEENNELVGYTDSDWAGSFDDRKSTSA
YVFCLGSKAISWSSKKQNSVALSSAEAEYISANEATREAVWLRRILIDLQQKVEDPTPIFCDNQSAISMSKNPVFHGRSK
HIELRHNYIRDMVQRTEINLEYIKTTEQPADVLTKAVPIEMLEQFKDNMKITN
>SC-4#LTR/Copia 61-4350 [Oryza sativa]
MPRRRSSSPIVRTPHDSGGRATGSGGGDRGLVIHRVVKEGGGSVNYPLLTKTNYNDWALLMKIKLQAHCLWAAIEPDGVD
VPLHEDRMALDAICSAVPPEMIGTLATKASAREAWECIKTMRVGNDRIRKASAQKVRAEYESLAFRGDETVEDFALWLTT
IVNQLATLGDPEPADKVIEKYLRVARPRFNQLILSIETLLDISTLSMEEVTGRLKAAEDSGQSSSHTAGGKLYLTEEEWA
ERQKKKDQEAKRGDSGGSGGRGKRRGGRGRTGGGGTASPESTNSGSARKGDKCRNCGKLGHWAKDCRSKSKREEQAHVAQ
EDEEEHTLMLLTGGRVDTVDAAAPEGDTPTPPHQAVVELVEMKVFAALDDVADHDPGRWIMDSGASNHMTGSRMAFADLD
TNITGNVRLSDGSVVRIAGRGTILFACKNGEHRTLSNTYYLPRLAANIISIGQLDETGFKVLAEDGIMRVWDEQRRLLAR
IPRTPGRLYMLDINLARLVCLAAHADEDAWRWHARLGHINFRALCKMGKEELVRGLPCLSQVDQVCEACLAGKHRRSPFP
RQALCRSDEPLALLHGDLCGPITPATPSGNRYFLLLVDDYSWYMWVALLSTKDAAPAAIKRIQAAAERKSGRKLRALRTD
RGGEFTSTQFAEYCAELGMRRELTAPYSPQQNGVVERRNQSVVGTARSMLKAKGLPGMFWGEAINTAVYLLNRSSSKGIG
GKTPYALWNGVPPAVHHLRTFGCVAHVKTTTPNLKKLDDRSCPMIFVGYEPGSKAYRAYDPATRRVHISRDIVFDEAAQW
DWDAEAAADLDTDFVVEYTTVYHPGSLSGTRQDAGEPPARSSSSPRTPSDSPTAGRTPSVHGDAPAVDFVSPPTGAAANL
DADHDDAPLRFRTMDNVLGPAMLPGLANREVQEELMMVSGEEPATFAQAERDEDWRRAMLDEISSIEENKTWRLVDLPSG
HRPIGLKWVYKLKKDAQGVVVKHKARLVAKGYVQRAGIDFDEVFAPVARLDSIRLLLALAAQEGWMVHHMDVKSAFLNGE
LIEEVYVVQPPGFEIDGQENKVYRLDKALYGLRQAPRAWNTKLDCTLKKLGFKQSPLEHGLYARGDGSGRLLVGVYVDDL
VIVGGDSGMIKGFKEQMKAEFKMSDLGPLSFYLGIEVHQEAGIITLKQAAYASRIVEKAGLTGCNPCATPMEPCLKLSKE
SAGSLVDATEYRSLVGSLRYLVNTRPDLAYSVGYVSRFMEKPTDEHLAAVKRIIRYVAGTIHLGCRYVKEGEGGLQGYSD
SDMAGDIDTRKSTTGVIFFLGKNPVSWQSQKQRVVALSSCESEYIAAATAACQGIWLARLLGDLRNAATEVVDLRVDNQS
ALALMKNPVFHDRSKHIQTKFHFIREAVENGEITPSYIGIEGQLADILTKPLSRIKFQELREQIGMFPV
>SC-3_pol#LTR/Copia 158-4950 via tfasty with SC-4_1-4350, 3 frameshifts and 3 stopcodons.  [Oryza sativa]
MSDARSRRLVASSTWRQQDAELAAAEERRRATAQTAAAAAARVAKLAAVELAAARAEAEAEAAEDAARAAEVEVETLRSS
INGSIAGDITADRELEELARGRAWERAERWAAAHLHGGGGGPRDRAPADGNPDGRWRAGGSPEPARGPRRQRGSLSPDWR
HGHHGVQTVVRDFGPGGGWPTLTKTNYIEWAAVMRVRLQVRHMWEAVRSGDVDYDEDRRALDALIAAVPPEMQFSLSQKR
TAKEAWDAIAAARIGSDRARKSTLQALRKEWENLPFKPGEDVDDFALRLNTLLQKMVQYGDDTYDEERAVEKLFRCVPEK
YRQIARSIESLLDLSTMSIEEALGRLKVVDGDEPQPLSGPITIGGKLNLTREQWEASQGDGRKGESSSPTGGRKPRKARG
GVQLRWARRRAEGGARRGAQGVATGNHKPARDNACRNCGKLGHWAKDCRQPRRGQAHVARVEEEEPALLLAHASIELPPA
APAAAAFLHLDEPKVLVSLCNGSSNDKADGWYLDTGATHHMTGxREFFTEFDSSVQGSVKFGDASGVEIKGVGSVTFTAK
SGEHRLLTGVYYIPALRNSIISVGQLDENGSRVLVEDGLMRIWDRRRRLLAKVTRGTNQLYILSAQVAQPVCLAARRDDE
AWQWHERFGHLHFEALKQLSAKEMVRGMPCLDHVEQLCDVCVVTKQRRLPFPQQTSFRAKERLELVHGDLCGPVTAATPG
GRRYFLLLVDDLSRYMWVMVLGSKGEAADAIRHAQATAEAECDRKLRVLRTDNGGKFQFASYCADEGIQRHYTTPYSPQx
NGVVERRNQTVVGMARALLKQRGMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHGRKPAVSHLWVFGCLAFAKELG
HIGKLDDRSTPGVFIGYAEGSKAYRILDLETQRVRTARDVVFDEGRGWVWDKAVDDGSTPMYDDFTVEYVHFEGAGGVGS
SSSSSVSTPAPESPPTPTPTHPRATTSTTTSSSSTPPQPVTPHAPAPTVTPPSTSTSTPARVERSPVEFATPLSHDGERI
AYHDGEQLRYRTMEDLLGDQPVPGLVPRDLEAQLHLACDDGEPRSFAEAEKHAAWRAAMQSEMDAVQENRTWELADLPRG
HRAITLKWVFKLKRDEAGAIVKHKARLVARGFVQQEGIDYDDAFAPVARMESVRLLHALAAQEGWGVHHMDVKSAFLNGD
LKEEVYVHQPPGFVIPGKEGKVLRLHKALYGLRQAPRAWNAKLDSTLKGMGFEQSPHEAAIYRRGNGGNALLVGVYVDDL
VITGTKDAEVAAFKEEMKATFxMSDLGPLSFYLGIEVHQDDSGITLRQTAYAKRVVELAGLTDCNPALTPMEERLKLSRD
STAEEVDATQYRRLVGSLRYLTHTRPDLAFSVGYVSRFMQRPTTEHQQAVKRIIRYVAGTLDHGLYYPRCPGKAHFVGYS
DSDHAGDIDTSKSTSGILFFLGKSLVSWQSVKQQVVALSSCEAEYMAASAASTQALWLARLLSDLLGRDTGTVELRVDSK
SALALTKNPVFHERSKHIRVRYHFIRSYLEEGSIKASYINTKDQLADLLTKPLGRIKFLELCSRIGMAQLPHKTTHKT
>SHACOP9_MT#LTR/Copia 358-4399 via tfasty with LCCopia1, 2 frameshifts  [Medicago truncatula]
MTSEKAKDFCVRFTGKNYPAWEFQFRMYVKGNKLWSHLDDVSKAPTEKAALEEWEYKDAQIISWILSSIDPQMINNLRSF
STAQEMWNYLKRIYNQDNAAKRFQLELEIANYKQGNLYVQEFYSGFLNLWTEHSAIIHADVPKASLAAVQEVYNTSRRDQ
FLMKLRPEFEVVRGALLNRNPVPSLDTCVGELLREEQRLLTQGTMSHDAFISEPVPVAYAAQSRGKGRDMRQVQCFTCKQ
FGHVARSCTAKFCKYCKQNGHVIFDCPIRPPRRTQYPTQALHATTSSAAPPTITSASDGGSLQPEMIQQMVLAALSNMGI
HGKSSNVSRPWFLDSGASNHMTGSSEYLHNLHSYHGNQQIQIADGNKLSITDVGDINSDFQDVLVSPGLASNLLSVGQLV
DNNCNVNFSRAGCLVQEQVSGKVIAKGPKVGRLFPLQFISSHLSLACNNVLNSYEDWHRKLGHPNSTVLSHLFKTGLLGN
KQVVCTASISCPVCKLAKSKTLPFPSGAHRASNCFEMIHSDVWGMSPIASHAHYKYFVTFIDDYSRFTWIYFLRSKSEVF
SMFKKFLTYVETQFQASVKIFRSNSGGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSLLLQASVP
PRFWVEALSTAVFLINRLPSTVIEFDSPFFRLFKFQPDYSDLHTFGCVCFVHLPLFERHKLGAQSVQCAFMGYSNSHKGF
VCYDVSNHRLRVSRNVTFFDNQFMFHSISPDINDIAILPNFSIMPQSIERYKPGFTYVRQRIKQVPTAPSDTEPPPDPEP
VEPRRSGRTSRAPDRFSPDRYDSKHTSLTASLSSISIPTCYSQAVKDVRWIKAMNEELQALQESFTWDIVSCPPDIKPIG
CKWVYSVKLNSDGSLNRYKARLVALGNKQEYGIDYDETFAPVAKMTTVRTILSIAASNGWSLHQMDVKNAFLHGDLTEDI
YMTPPQGLFSSSKGVCKLKRSLYGLKQAPRAWYEKFRSTLLGFSFCQSQYDSSLFIHSTSTGIVLLLLYVDDMVITGSDN
ASIQRLKEQLHASFHMKDLGNLHYFLGLEVHATSKGIFLHQHKYATDLISMAGLQSANQVDTPLEVNVKYHRDDGDLLPD
PLLYRQLVGSLNYLTITRPDISFAVQQVSQFMHSPRHLHLAAVHRIIRYLKGSSHRGLFFSIGNSPKLSAYSDADWAGCP
NTRRSVTGWCMFLGSSLISWKSKKQARVSKSSTESEYRAMSAACSEIIWLRGLLAELGFPQTEPTSLYADNTSAIQIVAN
PVFHERTKHIEVDCHSIRDAYDDRLISLPHVSTQLQIADILTKAVPRPRHQFLVGKLMLIDQPHQFEG
>SHACOP16_MT#LTR/Copia join48-1622  [Medicago truncatula]
MEENTGTMIKLTSTNYSIWKPKMEDILYYKDMYDPVEKGDTKPDKVTDEDWKKSHRKAVSLIRQWVDLSVFHHVATETNA
QTLWKNIEKMYQRKTAQNKTFAIRKLVNLKYREGRSVAEHLSDFQDLVNQLVAMKLVLNDELQALLLLSSLPKSWETLVV
SLSNSAPDGALTLSQVKDSMFNEETRRKYMGSSSSHALVTENRGRSKSGGRSNKSKDRSQSQPRRKFKCFHCNEEGHIKR
NCKSWKNKEKKDRRNQRPDEDENTTTPVVDGEVVLFSVEEEECHVADSCVEWVIDSAASYHATSNKEFFTMYKVGDFGKV
KMGNNSIADIVGIGDVCVQTNTGFTLTLKNVRHVPDLRLNLISVHALDLAGFQNNFGDGKWKLTKGSLMIARGVVYSTLY
KTQVKLIKDGLNAAENVALADLWHKRLAHLSEKGLQILSRKSLIPSDKGTKLNPCDYCLFGKQHRVSFSRTSKLKDNKLD
MVYSDVCGPMEVETLGGSRYFVTFIDDASRKVWVYFLKSKDQVFQFKRFHAMVERSTGKSLKCLRSDNGGEYTSHEFKSY
CSEHDIRHEKTVPGTPQHNGVAERINRTIMEKVRCMLKMAKLPKPFWVEAVQTTCYLINRSPSVPLGFDIPERVWSGHDI
SYSHLKVFGCKAFAHVNKEHRQKLDDKAIPCIFVGYGDEEFGYRLWDPEKRRIIRSRDVVFHEQETMSDSTILETPKRYG
KVDLTLTTPPVRVATEGGDLDEDPGVDGEPVVEDGDDEDVQDGEQSTTSHLRRSSRDHHPSTRYPSSEYILITDEGEPDS
FDEVQTHKDKIQWMKAMQEEMDSLQKNDTYELVKLPEGRKALKNKWVFKLKKDGDKLVKYKARLVVKGFGQKRGIDFDEI
FSPVVKMSSIRVILGLVASLDLELEQMDVKTAFLHGDLDEEIYMVQPEGFEKTRKEHLVCKLKKSLYGLKQAPRQWYKKF
DSFMMSHEYTKTDADHCVYVKTFRGNKFIILLLYVDDMLIVGQDKDMIGDLKKELSKSFDMKNLGPAKQILGMKILRDRK
ARKLWLSQQQYVDRVLERFNMKGAKPVSTPLANHFKLNRVSCPTSQDEKEAMVAIPYSSAVGSLMYAMVCTRPDIAHAVG
VVSRFLSNPGKEHWEAVKWILRYLKGSSNKCLCFGGSDSLLKGYTDADMAGDLDGRKSTSGIVFTFAGGAVSWQSKLQKC
VALSTTEAEYIAMAEAGKEMLWLKRFLDQLGMKQERYVIHCDSQSALDLSKNAMYHSRTKHIDVRYHWLRQAAGEQQFML
EKIHTDKNPADMLTKVVAREKLQLCAELIGMDRK
>SHACOP11_MT#LTR/Copia 66-4382  [Medicago truncatula]
MADSDSNTEDTSSSSILAELTAKMTEVLNRAAAPSQVNVNSDHTVVAPIGIKLDGSNYPLWSQVVEMYISGKDKLGYING
DLPQPPQTDPTFRRWRTDNAIVKGWLINSMDTSLISNFIRFSTAKLVWDAIATMYFDGSDTSQVYDLRRRVSRLKQAGGS
IEKYYNDLQGLWREIDFRRPNPMECPIDIQHYNTLLQEDRVYVFLDGLDDRLDNIRSDVLQMKPFPSVEQAYAHVRREAL
RQAVMTDNSDEIPGAVLASKSLRLHTGKASSNSKHKSSYISTKCSHCGGTRHTRETCFKLHGYPDWWTDFQARKHRDTST
SDSDPGTAAVASAEPHLSLIPSSSSHLTQGNALIFSNPVDDRNAWILDSGATDHMTFDVADFSKRSTPRRKSISNANGGL
SSVTGAGTVMLSPSLLLSNTLLVPSLSHKLLSVSQVTNDLNCVVLIYPSFCFLQDILTKEIIGRGTKKGGLYYMEDFSVG
QAHHMRHPENLKVEQILLWHRRLGHPSFGYLKHVFPDLFIGTSLLDLKCEACILAKSHRVNFPLSMNKIDVPFALIHSDV
WGPSPKSSVFGFRWFVIFIDDCTRMTWIYSLKHKNEVFQKFQQFHKMIQTQYLSKIRILRSDNGGEYVNQQFREYFQQHG
HIHETTCPQTPQQNGTAERKNRHILETARALLLGAHVPSHHWADAVTTAVYLINRMPSKVLDFKTPLQTLSTFVSLPTIQ
MLPPRVFGCVAFVHLHKNQRTKLDPCAIRCLFLGYGVHQKGYRCFDPINRHTYVTMDVTFLEFDTFYAPPSSNSSLQGET
REEESNWMMFDWFNHIDTPSHEVSDEAPQTFFPSLEVEATNPPLSPVSNDSSLENIVEVSSPVTLDNNVDINVGYELPYR
HNRGKPPKRYSPEVEDQRSRYPITNYVSTEELSEPLKKFANELSSHSVPTNVEEALEDPRWIQAMNEEMEALNKNTTWNL
VPLPKGKKPVGCKWVFSIKYKADGSIERYKARLVAKGFTQTYGVDYQETFSPVAKLSTVRVLLSLAVNLDWPLHQLDVKN
AFLHGYLDEEIYMDIPPGYMTSSKTEVVCKLQRSLYGLKQSPRAWFGRLSLAMRKYGFQQSNADHTLFLKHREGKVTALI
IYVDDMIITGDDSKEIERLQKQLATEFEMKNLGGLKYFLGIEVARSKQGIFISQRKYILDLLSEVGLLDCKPVDTPIIQN
HHLGEYPDQVPTDKGRYQRLVGKLIYLSHTRPDIAYAVSVMSQFMHNPSEDHMNAVIRILRYLKSSPGKGLMFTKNNHLQ
VEGYTDADWAGDITSRKSTSGYFTFVGGNLVSWKSKKQKVVALSSAEAEFRGMAKGLCELLWLRRLLTEIGFAPNCEMKL
FCDNKAAINISHNPVQHDRTKHVEVDRHFIKQNLETKIIQFPFVKSEDQLADILTKAVCSKNFFNSLDKLGIQNLCAPT
>Copia-94_BRa#LTR/Copia 123-4029 via tfasty with Copia-96_BRa, 80.2% SW:4242, 4 frameshifts. [Brassica rapa]
MESVHGKFEMEKFDGSGDFGMWKFKMQMQLELQGLGHILTETASSTKVETTDDSDDVTDKEVKVDPLAKEKDTRARNLIC
SSLTNMVLRKVMREATAMGVWRALEADYQTKTLPNRIYLKQSFASYRMIESKIIEENLDVFLKLVDDLASLNIQVSDEDQ
AIQILTSLPRTIQILTSLPPQYDSLVHTLKYGNGKETLTIKEVTTSAYAKEAELKEKGLLKRSKTDAEGLVVSRERTDKR
SGKGGRFRSKSKDFRSKSKGKGQQKTRECWICGKEGHFKRECPERKDQRSQNAANVAQDKEYPMVLTASVHDTKSEWILD
SGCTFHITPNREVLFDFVEENGGRVLMGNNTFSEVHGYGKLKIVNPDKSTVILTEVRYMPTMGRNLISYGQLEKCGCTYR
GEGFKVVFFKDGKRVLSGSYKDGLYYLDGTVDKAEANVAKTAENLTNLWHSRLGHMSLKNMNFLVKNGYLKEKEVHTLDF
CENCVLGKTHKLPFPTAKHATTETLAYVHSDLWGSVSNTESLSGCKYFLTLIDDFSKKVWIRFLRTKDETYENISEWKKL
VETQTGKKVKCLRTDNGLEFCNNLMDTMCKEAGVKRHPTCAYTPQQNGVAERMNRTIADKIRCMLAESGLEKKFWAEEAA
TAVYLINRTPSASIEFKIPEEVWSGVKMEFGHLRRFGCVAYVHTVQDKMSPRALKGIFMGYPQGTKGYRVWLIEEGKSTI
SRNVVFDEKTLYKEYKGKGVASDPKTRKVTFKADLIQGPTQKNSIFEVGSSSESGNTGEGGVTSGQRRNSDSEESEEESE
GQEESLDDYLLARDRVRRQTKPPAMFESGDFVAYALTCADDIVTNEPKSLAEAKQSKDWDKWNASMKEEKASLDKNHTWD
IVDRPLRQRVIGCKWIHKLKEGIPGVEDPRYKSRLVAKGFTQVEGVDYNEIFAPVVKHVSIRIILSYVVNVDAELEQMDV
KTAFLHGNLDKTIYMEQPEGFVKKGDEGKVCLLRKSLYGLKQSPRQWNLRFDSFIKTLGFIRCVKDHCVYMKKLKTGDCI
YLLLYVDDMLIAAKTKKDIQVLKKRLSTEFEMKDLGAASRILGMDIVRDREKGLLKLTQNRYIGQVLKTFRMEFCKPVIT
PTNSQFKLKSLTDKEWLIESKVMDSVPYASAVGSLMYAMVGSRPDLAFAVGLVSRFMSNTVSWRSTLQHVVALSTTEAEY
MALSEATKEGLWLREFCDELGFDSEFFNLHCDSQSAICLAKNPVHHDRTKHIARKIHFIRDIIEMGLVKVLKIHTSLNPA
DMLTKTLPGSAFEKCLKTLGIVA
>Copia-93_ST#LTR/Copia 128-4141  [Solanum tuberosum]
MGDNKNDESTSNVNNTSSLASSLMTRIVSNAKFAVEIFDGSGHFGMWQGEVLDVLFQQGLDIAIEEKKPDGVGEEDWKII
NRVACGTIRSYLAREQKYPYTKETSANKLWNSLEEKFLKKNSQNKLYMKRRLLRFTYIPGSTMNDHITSFNKLATDLRNM
DVTFTDGDMALMLLSSLPDEFEHLETTLLHGNDEVSLKEVCSALYSYEQRKREKQKGGEAEALIVRGRSQNHMRTKNGRS
KSRSRLSKDECAFCREKGHWKKDCPKLKSKAKPNNGKAVMDSNVADCDDSDYSLVTTDPSKSSDVWLMDSACSYHMCPNR
DWFVDLQEGECGVIHTANNNPLTAYGVGSIRLRNHDGLTRTLTDVRYVPDLKKNLISVGALESKGFKVIADNGVMRICSG
ALVVMKAIRRNNNMYHYQGSTVIGTAATTSNDDKEAEMTRLWHMRLGHAGGKSLKTLSDQGLLKGVKTCNLEFCEHCVKG
KQTRVKFGTTIHNTKGILDYVHSDVWGASKTPSLGGKHYFVTFVDDFSRRLWVYTMKTKDEVLGIFLKWKAMIETQSGRK
IKCLRTDNGGEYKNDLFQKICEENGIVRHFTVRNTPQQNGVAERMNRTLLEKVRCMLSNAGLGKEFWAEAITYACHLINR
LPSAAIGGKTPLEKWYGKPAEDYGSLYVFGSIAYYHVRESKLDPRAKKALFMGITSGVKGYRLWCPETRKIIFSRDVTFD
ESALTNKVTVEEVKQTDGASKQVEFEGKIIFPTHGSNEETTEVFPLEEEPVEGEVPSQEPQPQLESIATSKPKRTIRKPA
RLIDVVACADSIAADDIPTTYKDAVQSSEEDKWRIAMDEEMQSLHQNHTWKLANLPDGKKAIGCKWVFAKKEGFPNQEDV
RYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRVLLALVAQLNLELVQLDVKTAFLHGDLEEEIYMTQPEGFKVDGKENM
VCKLEKSLYGLKQSSRQWYKRFDKFMLQQRYIRSKYDHCVYLRKLEDDSFIYLLLYVDDMLIASKSQEEIEKLKIQLRKE
FEMKDLGEAKRILGMEIKRDRHSKKLFLSQKEYLKRVLNRFGMNEKTKSVSTPLAPHFKLSDAMSPKNEVAREYMSRVPY
ANVVGSLMYAMVCTRPDISHAVGVVSRYMHNPGKDHWQAVKWILRYIHNTVDVGLVFEHKDSQYLVGYCDSDYAGDLDKR
RSTTGYVFTIANAPVSWKSTLQSTVALSTTEAEYMAITEAAKEAIWLQGLLRELGIGQEGITIFCDSQSAIQLAKNQVYH
ARTKHIDVRYHFIRDIIEEGGVIVQKIHTTDNPADMLTKVVTAVKFQHCLNLINIVEH
>Copia-96_AA#LTR/Copia 113-4246  [Aedes aegypti]
MEKIGIAKLTNDNYDSWKLEVEFLLVREGLWKYVSPGVKPEVAASGSNVAELAAWDEGDQRARATIGLLLTKSQHGHIRN
TNSAKAVWDNLEKQHQKKTLTTKVHLLKRICDMEYHDGDNIEEHLMEFEDLFEKLANAGTKLDEDLQVVLVFRSLPGSFD
ALTTTLENRADDELTMHLVKGKIINEVHKRRDPXVVDSVVLKAEDKKKNSVCFFCEKPGHKKANCSLWLRQKKEEGDSSS
AVSRHSEVRKVSKKLAKAKLATSRSEEFTFLARECVTNGCVVNSDVNVEPRNSAFVASECAAKDWIVDSGASSHMCANRK
FFVSFNEPRMDTPKSVTVADGKHAAVKGVGLCQIFCIGGGGAETRILLSEVLFVPDLDMNLVSVGRLVQKGASVIFDKNG
CRIANGDKIAAIAPSSKGLFHLQMVERASAVSGQCHTKNCIHEWHRKLGHRDTQAILDLERKALATGIKVRXCSVRYSCE
PCLEGKMARRPFPKKVRRKSKAVLDLIHSDLCGPMKTATPGGRRYFLSLIDDYSRFTTLYILRKKSDTVDVIRDFVRLMK
TQFGRPPKIIRSDQGGEYRSAELVKFLKQEGIQQQFTTAYTPQQNGVAERKNRSLVEMARCMIIDSGLHYRYWAEAVNTA
NHLQNMLPTKPVQQTPYEIWHGTKPDMSMIQIFGSEAYVHIPKEKRTKLQSKATKLTFVGYSQQHKAWRFIDLKTNEIVF
SRDARFLPSSDREIPDAVDDEIFVVPPVKPSSNMEHEESDESDEDSEDEPDADSDDEEEFRGFEEESCDNLDLGFENPAD
RSLYEDANGSVVSRQDGELVSIQGESTYLQEEQFAVTPRRSGRSTKGIPPERYVADGKLARSQQCEPRSYQEAVSDPENG
HWKAAMNDELKSLRECKAWDLTSLPPGSKTIGCRWIYKKKQDEQGKLVRYKARLVAQGFTQRYGLDYDEVFAPVAKQVTL
RTLLTIAGRDEMQVRHVDVKTAYLNGDLKETIYMRVPPGLRVEKGQVCRLRKSLYGLKQSARVWNQKLNDVMKRLGFRQA
DADPCLYVRKTSGGTVYILVYVDDMLIATSRDEDYEGVVKALASEFQITTLGEVKHFLGIRVTRKNNAYCLDQKAYIDKL
VAQFGLADAKGSRIPMDVGYLQQKEELESLPNNEKFQSLVGGLLYLSVNTRPDIAISTSILGRQVSKPTNADWTEAKRVL
RYLKSTSDLKLELAVNRQELRGYADADWAGNVKDRKSNSGYLFQLGGGPISWCARKQSCVALSSTEAEYISLAESCRELL
WLKKLLKDFGEPVQEPVQIFEDNQSCIKMLEQNAGLKRSKHVDTKYHFVKDLAENDNVNVTYCPSADMLADIFTKPLNRV
KLEDIRERIGLRSLRDEE
>Copia-103_Mad#LTR/Copia 412-4891 via tfasty with Copia-1_Pru, 68.2% SW:3262, 3 frameshifts. [Malus x domestica]
MPISKSSAMDILRNISDFMSIKLDDTNYVSWSAKIQRLLKGYHLLGYIDGSLPCPDSTSESFQQWVDHDTAIMNMLIATI
TEEAFSEIMNCETSLEAWVTLQERFSSVSEASLMQLKTNLQTIQKGSDSIEVYLSKIKTARQRLACVGFTITDKDIVLIT
LNGLPVEYNHFRSHIRARPVAITISELRSLLIAEESDISKANTIMNAPMLAAMVAKGLSFSTSSTTEPVLNSSSKTYSSV
NSNLSEHMLGSSSQPPYSQGNSYDTSWSRGGYTGGRFNRGKGNYRNKYNGGGRYNGGYGRSQYSGPNSTSFPAGGPQFSN
GGQSFHPCIFKILHGGYNGGQFPSFQSGGLQFYNGGQFPHSGGYQGSYGGSPQFSHGEGSSSHGGGSYYYVPPHNGQGVL
GPSAPSYLAPPPSPPVSSVSTSSSSTIPCQICKQQSHTGADCPHRYNYVVQGKSPPSVQAFTAMSSVPFQPPNIWLTDSG
ATHHMVSDINCLTAVRPCSPTDTITVGNGAALPILHIGDATLTLGSRVFHLHNVLHVPQLSQNLLSVRRFCLDNKCRFLF
DEVIFEIQDKMGKVLYQGQSTDGLYPIPVQIKLDPTFTKRAFLGQKINSHLWHQRFGHPANDVTSIMLSQANISCSVDSS
SMICQSCLKGKMTRLPFSPSVNRASEAFHKVHTDVWGPSPHVSISGYRYYVVFVDDCTRYCWIYPLVNKSEVFGVFVQFY
AYISNYFSKSIKILQSDGGGEFISKVFQEFLASKGIQHMKSCPYTPQQNGMAERKHRHLVETAITLLSTASLPLKFWFHA
CSTANYLINRMPTKGLDMKSHFEKLFGSLPDVTTLKVFGSACYPLLRPYNHNKLQERTDQCVFIGYTLDYKGYMCYHIAS
ARVYVSRHVIFYEGVFPFALIKAIDPAPMTSSFFTPLTPLCAAPRPSEATNLAHIHMQSDDTSRVVQNIPPPVNQDSQPP
TAHTVPENHSGASMSSASTTLIPHNHHPMITQAKSGITKKRALHASISPDPSLVEPKTYRQAMKVPEWYKAMQEEYQALQ
QQQTWSLVPLPASRSLVGCKWVFKLKKNADGSVSRHKARLVAKGYLQEEGVDYDETFSPVVKHTTVRLVLALATNFGWTI
KQLDVKNAFLHGSGPRAWNERFTTHVLGLGFQQSQSDSSLFVQRTDSVVIILLLYVDDILLTGNNSAALDSFVKTLSSEF
DMKDLGQLSYFLGLHIHYEPEGIFVNQVKYTTELLSKAGMTECKPCATPLVPEAKLLKYEGEPLADPFLFRSLVGGLQYL
TFSRPDLSFAVNTVCQFMHRPTTLHFMAVKRILRYLKGTIEFGIQFSRGNLDLQAYSDADWAGDPNDRRSTSGFVIFLGR
NPIAWGAKKQPTVSRSSTEAEYQSLAQTACELHWIQQLLCDLHLYLARPPSLWCDNISAIALAHNPVFHGRTKHIEVDVH
FIRERVHKKDLVISHVSSSNQIADIMTKGLHSPQFLFLRSNLMLQNPTMRLRE
>Copia-102_AA#LTR/Copia 95-4120  [Aedes aegypti]
MERTGIAKLNNENYDSWKLEVEFLLVREGLWKYVSPGVKPEPAADGANAAEIAAWEEADQRARATIGLLLSRSQHGHIRN
TTTAKAVWDNLKQQHEKKTLTSKVQLLKRICDLQYHEGDDIVEHLQEYEDLFEKLANAGTKLDNDLQVILVFRSLPSSFD
ALTTTLENRSEDDLTLELVKGKIVNEVLKRKEKTPAEGIAMKAEDKKKNIVCHHCQKAGHKKRFCKLLTKKNKEESARSQ
SESDRKAEKAKLAKSEEEVFAFGVSDSAVSNSVDGWIIDSGASSHMCTNKGYFQSLDTLRDDTPKSVTVADGKSADVKGI
GICKLRCYGQDSKVKQIVLSEVLYVPDLDMNLVSVSKLVQKGATVTFSETGCTISRGSRIAAVAPRYMGLYHLRLAEQAG
AAMEQSCGKHCVHEWHRKLGHRDVQAIREMENKQLATGIKVGSCSSNITCETCLQGKMTRLPFPKKAKIKSKAVLDLVHS
DLCGPMNTVTPGGHRYFLTLIDDFSRYTTLYFLHKKSETVEAIKDFVRCMKTRFGKPPKMIRSDQGGEYRATELVRFLKD
EGILQQFTTAYTPQQNGVAERKNRSLVEMARCMIIDAGMHYRYWAEAVSTANFLQNMLPTKPIQLTPYEMWCGEKPDFGM
MQIFGSEAYVFVPKEKRTKLESKAVKMTFVGYSSQHKAWRFIDTKTNKIVFSRDARFLPTKENPDSSTPDAPEDHVVEEL
PPVSVPATTESHMDRLPDGFASDEEDFYGYEEEDFHGYEDEPTMYEDACNSGENVSEHGDESDAVQEEFGEIEEEQSSGD
LRRSNRTNKGVPPDRFSASSRFARPQSSEPRSYKQATTGTESAQWITAMKDELISHRENKTWDVVKLPPGKKIIGCRWIY
KRKLDEHGRLSSYKARLVAQGHKQRFGLDYDEIFAPVAKQVTFRMLLTIASRRNMLVKHVDVKTAYLNGDLKETVYMKIP
PGVAAEPNEVCLLRKSLYGLKQSARMWNRKLDETLRQMGFKPAEADPCLYVRWRNKKLTFILVYVDDMLICTSTQEEYEE
ILEALNSKFQMTALGDVKQFLGIQVTKTENGYCLNQQAYINRMVASFGLDDAKGSRIPMDPGYIQLKEEVERLPNNDKYQ
SLVGGLLYVSVHTRPDIGISASILGRRVSNPTVADWTEAKRTLRYLKATSGLQLQLGGDAGDLEGFADADWAGNVLDRKS
NSGYLFRFGGGLISWCARKQPCVALSSTEAEYISLSECCQELMWLKKLMKDFGESVKKPICIFEDNQSCIKQLSQAKTIG
KRSKHIDTKYHFVKDLFEQEQIDVTYCPSEDMLADILTKPLSRVKLEILRDRIGLRSARDEE
>Copia-91_GM#LTR/Copia 46-4134  [Glycine max]
MALNTGSFATVLPILDGKNWERWCIQMKAILGYQDVMDIVEEGYPSLPEGATEAQKAIHKENKKRDCKAMCLLHQCVDIP
HFEKIAGAATSKEAWDILEKGNAGANQLKKVRLQTMRRQYELMQMEDTEKIADFFNRIIKLTNSMKSCGETITESTIVEK
ISRTLTPRFDHIVVAMEESGKIESLKIEELQGSLEAHEQRLNERTTERHTDQALQAQTHKRGGSSGRSYNKTRGRGRDPR
SNAGKAPQQQEPEKHDSEQPESSNGRGGYRQYRGGKKRFDRKRLKCFNCGKIGHFSAECQAPTQNQSKGRQDPEANLAKG
EDVDVEDNTLLLMMTTNTEAGNDDTWYLDSGCSNHMTGHKEWLVNFDMKKRSKVKFADNRVIEAEGTGDVLIQRKDGGQA
LITEVLYVPTMKNNLLSIGQLLQKGFSMNLHDGTMEIFDRMQKKILKAKISENRTFQVKLGAFDSQCLNAETKSDESWLW
HMRYGHLNFKDLNLLHAKDMVTGLPQVRIPKSVCDHCMISKQTRASFSNYTPTRANDLLHVVYSDVCGPFEVPSLGGNRF
FVSFVDEFSRKMWTYLLKVKSEVFENLKKFTAMTEKQSGKKLKILRTDGGGEFNSREIEAFCTDKGILHEVTAPYTPQHN
GVVERRNRTIMNMVRSMLRGKNLPKALWGEAVVTATYVLNRCPTQQLKNQVPEAVWSGKTPSVKHMRVFGSTCYRHIPDQ
TRKKLDDKSEHMIFVGYNPTGSYKLLNPRTNQIVFSRDVQFDELNTWMKDKHDPSKKPMMQINTETLSEPEPDDVTGEVQ
AKPTGAVQAVEGRRSTRTRSLPTRLEDYEMFPDSAIDDDGELVHLALMGEAEPVTFQEAIKKEVWLEAMREELKAIERNK
TWELASLPNGKTAIKVKWVFKNKLKPDGSIAKHKARLVAKGFMQKEGYDYKEVFAPVARFETVRLIVALASWKGWKLWQM
DVKSAFLNGPLEEEVYVQQPPGFETAGQEDKVLKLKKALYGLKQAPRAWNKRIDSFLTDSGFKKCIVEHGVYVKFLKNDE
ALLLCLYVDDLVITGSNMGEIENLKTQLGSEFEMTDLGELSYFLGIEFMKTSRGIIMHQRKYITETLKRFHMQNCNSVAV
PVEANLKIDNSESEQNVDATLYRQIVGCLRFICHSRPEISYGVGVISRFMTRPKQSHLAAAKRIMRYLKGTKNCGILFPN
QKEKGDLHLVGYTDSDWCGDKVDRRSTSGFVFLLSGAPISWSSRKQDVVALSTCEAEYVAACNASCQGLWLLSLLAELKC
GSFEKIELQIDSKSAIDLAKNPVSHGRSKHIETKFHFLRDQVCRGRIGLHHCPTEVQVADILTKGLKTERFLMLRKMLNI
VCF
>Copia-85_ST_gag#LTR/Copia 659-1734 via tfasty with COP2_MT_gag, 1 frameshift. [Solanum tuberosum]
MIVFIMSNLSKLEFVALDISGKNYLSWVLDAEIHLTAKGLGDSIIEGNKASSQDKAKAMIFLRHHLDESLKVEYLTVKDP
LELWIGLKGRYDHLKATVLPRARYEWMHLRFQDYKTVIEYNSVVFRITSQLKLCGEAIKDEDMLEKTLTTFHASNMILQQ
QYREKGFQKYSELISCLLVAEQHNDLLMKNHEARPTGSAPLPEAHGVEAHGQSEIRQNNRGHDNVRGRGKGKRRYNNRRG
GGHNKRENNMGSQNNPSKGKGDHCHRCGLKGHWKNECRAPEHFVRLYQNSFKRKGNKGGASSSNARVESHLTLKDDAQAG
SSQKYDENVEANLALKDDAFDGLDDITHLEAEDFFGDRN
>Copia-84_SB#LTR/Copia 49-3964 via tfasty with Copia-142_SB, 1 frameshift and 2 stopcodons. [Sorghum bicolor]
MLKPTPFEGTHYKRWREKALLWLSAIRCGHVLQELPAGVRSEQDEEAWGHAETMCKAALLSIIHDSLVDAYIPLPSGRAV
WEALEARYGLFDAGSELYIMEQFHDYKMVDNRSVVKQAHEVQGLVKELELYGCPLPDRFVAGCIIAKLPHSWTDFATTLK
HKRQQFSIAELVGWSLDVEDKARAKDVKGKGKSGNGEATTSAHVVQKFRPKPQRKKPQQELKQKSTTSFKKGNNKKMGFD
KAKMTCFTWGNNGHFSRECPEAKWKPPPKVKTANTIETDAGASGYGNLSAFSVCSSPDWWVDTGANIHVCADKSLFSCYQ
VGRSGALLMGNGARAGVHGVGTVDLKLTSGKTVQLKNVHHVPSIRKNLISGSLLCRDGFKLVFESNKCVMSKYGTFVGKG
YESGGLFRLSLVDTLPLAVNNVVNNVNVEMNVWHSRLCHINFGCMSRLANLNLIPKFDVAKNSKCHTCVEAKQPRKPHKA
AVARELAPLELIHSDICEMNGILTKGGKRYFITFIDDCTRHCYVYLIKTKDEALQYFKTFKAEVENQLEKKIKRLRSDRG
GEYFSTEISEFCAVHGIIHERTPPYSPQSNGIAERKNRTLTDLVNAMLETAGLSKEWWGEAILTANHVLNRVPTKNKEIT
PFEEWEKKRLNISYLRVWGCLAKVNVPINKKRKLGPKTVDCVFLGYAIHSVGYRFLIINSNAPDMAVGTVMESRDATFFE
NEFPMKIGAPSVSSHDSVPESHDSNIHADDNTHxLEQNSEEADNTVTRRSKRQRVAKSFGEDFIIYLVDDTPTTISETYS
SSDSDMWKEAVQSEMDSIMSNGTWEVVDRPFGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDYFDTYSPVA
RLTTIRVLLSLAASHGFLIHxMDVKTAFLNGELEEEIYMDQPDGFIANGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLT
SAGFAVNEADKCVYYRFGGGDGVILCLYVDDILIFGNNLNVIKEVKDFLSNNFEMKDLGEADVILNIKLSREEGNGGVTL
MQSHYVEKVLNRFGYSECTPAPTPYDPSVHLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSQFVSNPGDSH
WNALERVLRYLKGTMSYGIYFSGYPRVLEGYCDANWISDADQLYATSGYVFLFGGGAVSWKSCKQTILTKSTMEAELTAL
DTASAEAEWLRDLLMDLPIVEKPIPAISMNCDNQTVITKVNSSKDNMKSTKHVKWRLKTVRKLRNSGVISLDYVHTSNNL
ADQFTKGLSRNVIEGASRELGLRPT
>Copia-85_ST_pol#LTR/Copia 1862-5380  [Solanum tuberosum]
MKINKISQSSVGSKMSNGDMCLLDSATTHTILREKKYFSHLIMKKAYVNTISGSTKLIEGSGRAALLLPGGTLLVIDNAL
YCSKSQRNLLSFKVIRQNGYHVETANEGKVEYLYITTINAEKKTVHEKLPALSSGLYHTNIGTVESHAVVNKRFTGSNDF
IIWHDRLGHPGYNMMRKIIENSHGHTLKNQNVLQSKKFSCAACSQGKLVIKPSAAKVGVESPAFLERIQGDICGPIHPAC
GPFKYYMVLIDASTRWSHVCLLSTRNMAFARLLAQIIRLKAQFPDYAIKTIRLDNAGEFTSQAFNDYCLSTGITVEHPVA
HVHTQNGLAESLIKRLQLIARPLLMRTKLPVSVWGHAILHAAALVRIRPTSYHDISPLQLVFGQEPNISHLRIFGCAVYV
PIAPPQRTKMGPQRRLGIYVGYESRSIIKYLEPRTGDLFTARFADCHFDESVYPTLGGEQKQLGNEIDWNSLSLSHLDPR
TNQCEQEVQKMIYLQNIANQLPDAFTNLPRVTKSYIPAANAQVRVDVPIGQNVKANESGPRLKRGRPIGSKDKNPRKRKG
INDQDDHNMEAIAHEELRDIINDDTTEEVHVPENNENEEISINYVSTRKRWNRNNIVVDNIFAYNVAVEIMQQDEDLEPR
SVNECRQRNDWPKWKEAIQTELASLEKREVFGPIVRTPEGVKPVGYKWVFVRKRNENGKVVRYKARLVAQGFSQRPDIDY
EETYSPVVDAITFRYLINMTVHEKLEMHLMDVVTAYLYGSLDHDIFMKIPEALKVPEAYKNSKESCSIKLQKSLYGLKQS
GRMWYNRLSEYLLKEGYKNDPICPCIFIRRSKSEFVIIFVYVDDLNIIGTPKELSKVVECLKKEFEMKDLGKTKFCLGLQ
IEHLTNGIFIHQSTYTEKVLKRFYMDKSHPLSTPMVVRSLDINKDPFRPQEKDEELLGDETPYLSAIGALMYLANNTRPD
ICFAVSLLARFSSCPTRRHWKGVKHIFRYLQGTIDMGLLYSNASKSELIGYADAGYLSDPHKARSQTGYLFTYGGTTISW
RSMKQTIVATSSNHAEIIAIHEASRECVWLRSMTQHILQLCGLSVQTKIPTILYEDNVACIAQLKGGYIKGDRTKHISPK
FFFTHDLQQNGEINVQQIRSSDNLADLFTKALPTSTFEKLRYKIGMRRLQDIK
>Copia-89_BRa#LTR/Copia 46-4017  [Brassica rapa]
MATEREMTLSIPKFDGDYEHWAMLMENLLRSKEWWSLIEEGFAEPARGTVLNGQQRSELAELKLKDLKVKNYLFAAIDKT
ILKQILQKNSSKELWDSMKAKFQGNERVQSAQLQRMRREFEILEMKNGESVTEYFSRVMTVANDMRNLGEEMPDSKVVEK
VLRTLSDRFTYIMCAIEESKDIRNLSIDELQSSLLVHEQKFKKKENEEHVLKVAEEQGDQQRGGRWNRGRGGYRGAYRGR
GGRSGRGSPNKALVECYKCHKLGHYQYECPNWENGANYAEFDEAEEMVLMAYAETKKEEQVWFLDSGCSNHMSGEKQWFS
DLDEEYKHHVKLGNNSKMDVMGRGNVRMLIKGDPHIITNVYYIPELKNNLISIGQLAEKGISFVIQDGACRLYHPAKGLI
METQMTSNKMFVVTAKMMSQGPRCFKTTTEDTSYLWHCRYGHLSYKGLKTLKSGSMVRGLPEIKAPSKLCDNCITGKQQR
EVIPKKSNWRASQKLQLIHSDLCGPITPESNSQKRYIITFIDDFSRKCWVEFLSVKSEAIDAFKKFKARVERENSLQIQC
LRTDRGGEYNSNEFKELCESSGIRRQLTTAYTPQQNGVAERKNRTILNMVRSVLVGKKVPKRFWPEATNWSVHILNRSPT
SAVQGMTPEEAWSDQSPSVEHFKLFGCIAHAHIPKEKRKKLDDKSVKCVLFGTSEESKACRLYDPVEKKIITSRDVLFEE
DAEWDWKEEEKNGSNELEVDEEVAVEAEHEGMPRCETGDCSRTNAEASEVTQERRSKTAPTWMTDYVTGEGLSEGEEELE
DLVMFTETTDPVLFEDAVREKKWREAMNREIESIEANETWELCELPHGSKTIGVKWVYKTKLNENGEIDKCKARLVAKGY
AQKYGIDYTEVFAPVARWDTIRAILAMAAEKNWKIHQLDVKSAFLHGELTETVYVDQPQGYEKKEEAVKVYKLKKALYGL
KQAPRAWYSRIEGYFTEKGLEKCPYEPTLFGKVDDEGNTLLVSLYVDDMIVTGNKASVIEEFKEAMKSEFEMTDLGLMRY
FLGVEIIQDDSGIYMSQRRYAREILERFKLEECNSVRNPIVPGTKLVKEDGSGKADGVVYRQMVGCLMYLAASRPDLMYA
ISLISRYMENPSQTHMGAVKRILRYVKGTINLGVHYKKNGGNVLEAYSDSDYAGDLDTRRSTSGYVCFLSGAAISWSSKR
QPVVTLSTTEAEFVAAASCACQVVWLRRILESIGIAQREEESTVMYCDNMSTIKLSRNPVMHKRSKHIDVRFHFLRDLTN
DGVVELVHCSTHVQIADILTKPLKMDTYEKMRGMLGVCDVPGVN
>Copia-86_BRa#LTR/Copia 128-4294 via tfasty with Copia-41_BRa, 80.2% SW:4034, 1 stopcodon. [Brassica rapa]
MGENSSAETTMVYIARDPSTTLLSVNMSNITKLTNNNYIMWSRQIKALLEGHELHEFIDNSKPTPEATVITDGQSVTNPD
FAPWRRQDRLLYSAIIGAVSLPLQSLVSSANSTCEVWDLLATTFGNPSRGHIQQLKYQLRTCAKGTKTISEYLRLIKSKS
DDLALLGKPLDPEDLTDQILAGxPEDYKPVIDAVNGRDKTISFSELHEKLLNREAMLLCTEPAPNAVIPTVPVTANVATP
RPKQHGQNNWRPQNSRNNSSGYYQNNNRQTRPYLGRCQACGVQGHSAKYCPEFKIVRGSSGQPWQQAPPQQNWRPSAPPQ
QPWHPTANAAMVTGDSSTWLLDSGASHHMTSDLANLSLHSPYNGGEDVILGDGSGLSISHTGSLSLPSLKRPFFLDNVLY
VPSLDKNLISVFQLCDTNHASITFTPTFFQVRDLTTGALRLEGKPKNGTYEWPTHRSSTPPSLAFASAIKTSLSDWHSRL
GHPALPILKTMISKFSLPFSSTASFTKPCSACSINKMHKLPFGLSSVQSTHPLDIVFSDVWTSPLISVDGFKYYVIFVDH
FTKYTWFYPLRRKSQVYEIFVKFRALVENRFQFKLKTIYTDNGGEYMALSTYLSTHGISHFTTPPHTPEHNGIAERRHRH
IVETGLSLLTQASMPKSYWTYALATAVYLINRIPTQILSLKSPFESLFGTIPNYSKLRIFGCLCFPWLRPYAANKLDSRS
SPCVFLGYSTTQSAYFCLDRVTDRIYTSRHVTFHEYVFPFSLPNPLTSVVSPDESVTEDMASLIPQVSIVPIKSPSPAPT
TAPLAPSPATEPSSSSQPVAPTTTTSNSAAENQTHQTASPAAPPAPPATSAPTRASTRSRKPVQKLNLRATVTPCTEKIP
TSVQEALKDPRWRKAMYEELDAQLKNHTWDVVTPDKHINLVGCKWVFTIKRKPDGSVDRFKARLVAKGYNQRPGIDFTET
YSPVVKPTTIRLVLSVSVSNQWPIRQFDVNHAFLQGKLDDEVYMMQPPGFTDKDNPTGVCRLRKAVYGLKQAPRAWYNEL
RAFLIQSGFKNSIADPSLFIYNLHGVLLYMLIYVDDIILTGNNNAQLQQFINSLSHRFSLKDLGNLSYFLGMEAHRTSEG
LLLTQHRYIADLLHRNKMTGAKPVATPMCPNTPLTLHSGAPMQDPSHYRAAVGSLQYLSLTRPDISFAVNRLSQYIHQPT
TEHWHAVKRLLRYLAGTANQGIYFPTRNSPTLHAFTDADWAGNKDDYTSTGAYIVYFGRHPIAWSSKKQTGVARSSTEAE
YRSVASTTAEICWITSLICELGLKTTGVPAVYCDNIGATYLAANPVFHSRMKHLALDYHFVRHQVQVGNVRVSHVCSADQ
LADALTKPLTRPRFQSLMIKIGLANGGPS
>Copia-105_BRa#LTR/Copia 379-4317 via tfasty with Copia-91_BRa, 83.6% SW:4085, 2 stopcodons. [Brassica rapa]
MDPTPGRFITEKFDGKGDFSLWKYKLLGQLEIQGLSSVLREEPEQTTEVKDEDSTELKEDKVDPKAAEKDVRVRNLLSTC
LSDTILRKIMHEPTALGMWRALEQDYQTKSLPNRIYLKQSFASFKMEERKTIEENLDTFLKLIADLGSLKITVSDEDQAI
QLLTSLPPAFEPLVHTLKYGTGKETLTVNEVVSSAYAKEAELRQKGALNKSRQSSDGLYVESRGRSDKKGQRGYNNRGKS
RDYDRSRSKSRQKFAPKACWVCGDENHWKRDCPQRKQYDKGKTSTSANVALRLPDSIALTASPHASNEDWVLDSGCTSHI
TPRREVLSDFQEVEGSKVMMGNNTFCMVKGMGTITIDNPYGSVVTLGLVRYMPEMRRNLISYGQLEKSGCNYRGEGFEVQ
FFKGNQKVLTGKYDQGLYYLQGSIRKVTEGASCSAVDRTIQWHSRLAHMSQSSMEILVRKGYLNREFCEACAMGKSHKQS
FPKAKHTTKAILDYVHSDLxGSPNVTPSLSGSKYFLTFIDDFSRKVWIFFLRTKDEAFQKFEEWKALVENQTGQKLKCLR
TDNGLEFCNHLFDKVCRDSGIKRHKTCPYTPQQNGVSERMNRTIMDKVRSMLVETGLDAEFWAEAASTAVYIINRSPMSA
TGFKVSEATWTGTDPSYSHLKRFGCVAYVHTVADKISPRATKGIFLGYAQGTKGFRVWLLDDEKVVISKDVVFHEDHLFK
HKDLEETRVQALESHSSPKAKKKVTFKDELVEPPSGSSVQGGANSGKEEVICDSSSSSENEKEDDHSQEEDLSDYILARD
RVRRQIKPPSKYEDADLVAYALASAEDIELEEPRSFAEAKQSKDWDIWNGSMGEEMTSLEENHTRDLTERLKNQKVIGCK
WLYKLKPGIPGVENPRYKSRLVAKGFAQIEGIDYNEVFAPVVKHVSIRILLSAVVNFDMELDQMDVKTAFLHGVLQERIY
MDQPEGFVKKGxEDKVCLLRKSLYGLKQSPREWNHRFDEFMIRENYARSQYDPCVYTKGDSLQVRVFLLLYVDDMLIASK
SRVEINGLKELLKSEFDMKDLGAARRILGMDIFRDKEAGRLVLSQERYLSKVLKTFNMEESREVQTSIGSQFRLKALTKK
EAEEQVAEMEEVPYASAVGSIMYAMVGSRPDLAYAIGLVSRYMGSPGREHWAAVKWIMRYLKGSAGYSLVFTKGSDFLVR
GFCDSDYAADQDKSRSISGFVFTVGGNTVSWRSCLQKVVALSTTEAEYISLSEASREAIWLKGICDDLGFEQEAAEIQCD
SQSAIYLSKNNMFHERTKHMKVKYNFIREVETV
>Copia-117_AA#LTR/Copia 166-4365  [Aedes aegypti]
MKIIGSSTTMSEVGQRQRMVMIPTFQGAVGKDYPFWKVRVTHYLKQHGLLHCLERIPPMEEYADNPEGTTAEEAALRNAH
YEKRLKEDDEVVNIFWTSLDNDAMAHVLECVYAKQILDRLDSVYLRHGRLALFSIRRKLYNLRTAGYRSLMELFLAHERL
IQELERAGEAVSASEKLNTLLVAIPDRHQSILDAIAVMRQGDLATMSLSEIRSLFLDAEEKKEEHHELEPSNVAMAAGNR
NMPKKNKKRKKDTRTCYECGKPGHTKRYCXRLLNREVPGNRHASEREYVPAERANIALVSVSEREYVPAENKRKKVGIES
IDSEKEIVPAEYRREKFESERGLIAGSERERVPTERRHSKPADRKVRLIVDSGASEHMVCDESIMENSRTVDPITISTAK
DGQVMVGRKKGVVKLKSVVVKPGKIKKYELYDVLFIPNLQYNLLSVSKLVSAGKMVTFNDNGVVISEKSGEVIASGKKVG
GLFVLDLVVDDDDNGNEIACVTMVGSPLDLWHKRLGHLGYKNLEKLVSQRMVEGIEFERLSHIQGKRSVCSPCVIGKQNR
KPFKTNCVRSTRPLEVVHSDVCGPMSERTYDGYRYFVVFIDDFTHFVVVYLLRHKHEVLDKFKEYEAMASAHFNFQISRF
ISDNGGEYYGKKFRRFCTSKGIQMIPTCPYTPQQNGVSERMNRTLLDKTRAMLNENDVPKELWGEAVYVSAYLTNRSPTR
KIKGLKTPFEMWFNIKPKVDGLRIFGCLAYGQIAKERRKKLDDRSKKLTFVGYATNGYRLWDNESKRIIVSRDVIFDENK
SKFRTTQDPVKVEYQYHKIVTSSIPTMPTDASDVSSNDEDDSDEDEVKHDVNDGDVEGNVQNPEITVRRSKRIQEKQKQK
EEDVQGAFSAVSFVEDIPQTIPQLKNRDDWPLWKAAIQEELEALEANNTWSLVNKVPSGFKPINSMWIFGIKDGESRRYK
ARLVAKGCSQRYGLDYNETFAPVAKMVTIRTILSMAVVKNMLVHQMDVKTAFLNGNLEEEVYMKLPYDEDGLSPICRLNR
SLYGLKQAGRSWNQCFDDFMRKLNFSRLSSDTCVYVFNDYELYVVLYVDDILVVADDITRVNWIKQELAKRFQMKDIGAV
KTYIGLEIERNYKTKEMKISQKNYIEKILNRFGMQDCNPVATPMDVNIKWEACEGIRTDEPYKALLGCLQYLASMSRPDI
CAAVSILSRYQNCANCAHWNSLKRILRYLRGTKDLYLLYSFHEQARALEGFADADFGNNFEDRRSNSGNLFLVYGNIVSW
STKRQPTVSLSSTEAELISLCNGTKEGIWLSNLLREIGIESCPFTIYEDNIPCIRIAEEPREHQRTKHIDIKYMFIREVI
QSKKLRIQFIKSEDQLADILTKPLPRMRFEKMTARLQLQN
>Copia-116_BRa#LTR/Copia 91-4464  [Brassica rapa]
MGDDKVVVAGVTGEKGASSPYSIFASDNPGALITSVQLKGENYNEWATEMLNALQAKRKAGFVDGTLQKPPEGHADLESW
LSVNSMIVGWLRTSIEPKVRSTVTFITDAHKLWENLRERFSVGNKVRVHQLMAKLASCRQDGDAVIDYYGRLAKMWEELQ
TYRPPPACTCDAAALYEKEREDERVHQFVMGLDESRFGHVVTAIIEADALPDLGKAYNKIVREEDRLNSAKTREQQQDAV
GFVSRRENSNGDLSGGRGGVRDEFGSSTSNSQNRGKDRSCSNCGRPGHDKNTCWQLIGYPEWFTERGGRGTRGTSRGGGR
SGASRGRGQSNAAYATSANPGATIPELTAEQWRAISQILQEKPSGSSDKMSGKKLGDVILDTGASHHMTGDINLLINLED
ISSCKIGFADGSSTVAKKIGVLPLSDRISLYGVLYVPDLNCSLISVSKLLKQSNCFAFFTDTLCILQDRCSRTLIGAGEE
RDGVYYFTDVKAARVNKAAKVEDKVLWHQRLGHPGFSVLSSLSVFSGIKDSASLDSCEVCFKAKQARDLFPESSNKTKAC
FELIHIDVWGPYRVQASSGASYFLTVVDDYSRTVWTYLLLEKSEVKEVVQNFYAYAETQFGKRIKKVQSDNGTEFVCLGS
FFKSKGIIHQTSCVGTPQQNGRVERKHRHLLNVARSLMFQAKMPIKFWGEAVLTAAHVINLTPTRILKGKCPHEVLFGST
PSYSKLRVFGSLCFAHKQLRDKNKFVPRSRKCVFVGYPFGKKGWKLYDLETGEFFVSRDVVFREEEFPFSEVVAEKPSPV
SLESFDDELVTSDVEVVEARGSNGDQSEETLASQDSAIIEVGPEVSSTNEQDNVAPVETTANAPPETESSLGRGQRVKQP
SVRLNDYVTYKTACSNSTPHVLTTDRSFSVYFDPVSGNTLHPLTEYISDEQFSGGHKAFLAAVCADSEPKNFKEAMRDKR
WTKAVYKEVDALEVAHTWSVVDLPPGRVALGTMWVFKIKYNADGTVERFKARLVVLGNRQKAGCDYDETFAPVAKMTTVR
SLLKIVATQDWEVHQMDVHNAFLHGDLEEEVYIKLPQGVNNSDPNKVCRLHKSLYGLKQAPRCWFEKLTKALVKAGFVQS
LSDYSLFIYSRGTVEIRVLIYVDDLIVCGNDGEAITKFKGYLGECFHMKDLGRLKYFLGIEIGRNKEGFVLSQRKYALDI
VKETDQVDSKPVATPMEQNHHLATDDSPFTAEPARYRRLVGRLIYLTNTRPDISYSVHILSQFMQKPREGHMEAALRVVR
FLKGTVGQGILLKSETDLQVSIYCDSDWAACPLTRRSLTAYVAMIGGSPVSWKTKKQKVMSHSSAEAEYRAMSIATREVQ
WLRQLLRDLGFTQKTPSRLYCDSKSAIYIATNPVFHERTKHVEIDCHRVRDALKSGVITAAHIGTKEQLADVLTKALGKV
QFNHLMSKLGICSTHTTT
>Copia-120_BRa#LTR/Copia 79-4406 via tfasty with Copia-51_BRa, 83.4% SW:4947, 1 frameshift. [Brassica rapa]
MTTGTTSVLKSPYDLATSDNPGVAISSVQLTGENYAEWASELENALRAKRKWGFIDGTLSKPTPGDLDAWKTVNSMIIGW
IRTSISPKIRSTVTFASDAHKLWEDLAQRFSIGNAVRAHQLRAELAACRQDGMSVIDYFGKLSIRWEELLMYKPLPKCTC
SAMTSIKQEHEEERVHQFLMGLDEVRFGNVVTNIISMEPLPDLNSVYQRVIREERRLSTSKTEPKQEAVGFGVKAEEAPT
SGFNAAAVATSRSMMVCSHCGRTGHEKKECWQIIGFPEWWLEKNPNPNDRGGRGSSRGRGGSSRGRGRGNYPQQQQPRSN
AAQAPSPGTFPAFTAEQWASLTQLLEQQKSTHVPDRLNGKVQTREVILDSGASHHMTGDVYVLESVHSIPPCPVSFADGS
IVYALKSGSLRLSKDLVLDHVLFVPNLNCTLLSVAKLLKQTGCFAVFTDTLCILQDRFTRTLIGAGEERHGVYVYRGVTI
ARSLRVRAAEDQALWHRRLGHPAFAVLDFLPFIVGAKNIHDKFGGCEICFKSKQTREVFSDSNNKAPESFSLIHVDLWGP
YRIPSSCGASYFLTIVDDFSRAVWIYLLLEKREVRTILPNFCAMVHRQFGKLVKIVRSDNGSEFMCLSKYFSEHGILHQT
SCVSTPQQNGRVERKHRHILNVARSLLFQSNLSTKFWGESILAAAHVINRTPSSILKGITPYECLHGKPPSYTIIKTFGC
LCFAHRYTRDKDKFGERSRKCIFVGYPYGKKGWRLFDIEKEEFFISRDVVFDEASFPYQEDSLQAPVTALPVPVPIEEEQ
IVFDKGSTPPIATVEDNAVDNAAATPPPACEPAVSVQETVTAPPAEMGRGHRQKVPSVKLKDFVTYNASALVTPAQTDKH
NSSALTGTQIQSLSSPLVSGTSLYPIEHYVSDELFSAYHRVFLAAVTAGDEPKSFKEAMEDERWRNSMGLEITALEDQHT
WDLTHLPPGKRALICKWIFKYKFNPDGTVERPMSRLVVCGNRQVEGEDYEETFAPVAKITTVRMLFKIAAVRGWEVHQMD
VYNAFLHGDLEEEVYMKLPPGYKADDPNMVCKLRKSLYGLKQAPRCWFKKLSDALLQAGFVQSYEDYSLFTFIKGEDSLR
VLVYVDDLIICCSNLDMLVKFKQYLSKCFRMKDLGRAKYFLGIEVSRGSSGFFLSQRKYALDIITDAGLLGCQPLSIPVE
QNHTLLSVDPSEPLYNDPVRFRRLVGRLVYLTISRPELCYAVHVLSQVMHKPQKRHWDAAVRVVRYIKGTPGQGILLSSN
SSLRTQIYCDSDWQGCPRTRRSLSAFVVHLGGSPIAWKTKKQDTVSHSSAEAEYRSMSDALKELKWMKRLLADFGVYENG
PMDMFCDNKAAMHIAANPVFHERTKHIEADCHSVRDAVKGRLIATKYVRTTDQLADVLTKGLGRYAFDYLMSKLGVCNLH
SPT
>Copia-122_BRa#LTR/Copia 6-4178 via tfasty with ATCopia48, 82.5% SW:4693, 1 stopcodon. [Brassica rapa]
MAMEPYAPPSLKIVTSVTVKLTDTNYILWKRQFEAFLNGQGLLGFVTGSTPQPVPHLTVPNINGTNTPIPNPDHALWFQT
DQVIQSWLLGSFSEDIQSVVLDCATSAQIWMTLANHFNRASSSRLFELQRKLQTTSKQEKPMMDYLREIKSICDQLTSIG
SPVPERMKIFAALLGLGKDYEPIKTSIEGTMDAAQTPTFDDIIPRLTAFDDRLQSYRTDADVTPHLAFNSTRGKPYFTRN
RGRGRGGRNYFTTRGRGFPQHISSASTSSRSSVSSEAESRPVCQICGKTGHVAVRCWHRFDNAYDDVHSALAALRMAEIQ
DTQGHEWFPDTGASAHITNSTNHLQHSQAYHGSDSVMVGNGEFLPITHTGSSSICSSSGKLPLKDVLVCPNIAKSLLSVS
KLTKDYPCAFDFDRNNVLVYDKATKKVLLRGRNTSGLYQVKGSKFQAFYSTGQAAASDEIWHKRLGHPNPVTLQHLSSIK
SISINKSSTGHCEACKMGKSARLPFEASTFRATRPLERLHCDLWGPAPVTSVQGFVYYVVFIDNFSRHSWLFPLKKKSDF
FSVFVAFQNNVQNQxNASIGSFQCDGGGEFVSNQFLTHLQQRGIKQLISCPHTPQQNGLAERKHRQITEMGLSLLFHSQV
PQKFWVEAFFTATYLSNMLPHSSLSDHKTPFETLHNRMPNYSALKVFGCACYPTLRDYTRNKFDPRSLKCVLLGYSEKFK
GYRCLMPSIGRVYISRHVTFDETDFPFSNVYQHQRSQARTPLMEAWYKSISVETPNRDINRSTTASINSPIITTAQTPAA
IHQEARVQTPHRSETVPNGGSTSASSSSTTSTTTSINNNGTPAVNETRHSMVTRSKSGIVKPNPKYGLLTENVVCVEPKT
VAEALKHPGWNNAMYEEYDNCMLANTWSLVPYTPDMKVLGNRWIHRIKLNADGTIKKLRSRLVVQGNNQEEGVDYLETYS
PVVRTATVRLIIHIATVLKWDIKQMDVANAFLHGDLTETVHMRQPTGFIDKTRPDHVCLLHKSLYGLKQSPRAWFDKFSS
FLIEFGFKCSIKDPSLFVFSKGKDVIMLLLYVDDMLITGNKSEAMKKFLHEINNQFRMKDLGKMEYFLGIQAKYEENGVF
LTQERYALDLLASAGMSSCSVADTPLPIQLNKVPNQDIAFENPTYFRSLAGKLQYLTLTRPDLQFAVNFVCQKMHEPSVS
DYNLLKRILRYVKGTAEWGIKFNNDADFTIRAYSDSDWAGCPHTRRSTGGFCTFLGTNIISWSSKKQPTVSRSSTEAEYR
SLSETASELSWLCSIMREIGVPVQVTPELYCDNLSSVYLTANPAYHKRSKHFELDYYYVRERVALRALVVRHVPASKQLA
DIFTKSLPYVPFDDLRFKLGVCVPPTPSLRG
>Copia-122_AA#LTR/Copia 47-4085 via tfasty with Copia-108_AA, 2 frameshifts and 1 stopcodon. [Aedes aegypti]
MEKEDFVRVPLFDGSNYPAWKYRMQVVLEEHDLIDCIEREMAEMDELEVKPEDNDAAQRAKAKEAEKRKKQERRCKSLLI
SRIHDSQLEYVQDHQTPKAIWLALQRVFERKSVASRLHLKRKMLTLRHEGGSLSEHFLIFDKIVREYKSTGAQLDDLDVV
CHLLLTLGSSFATVVTALETMPEDTLTLEFVKCRLLDEEIKQQGGGVKASSEPAAFAGSSGKQRQRQQQQKKKWKCFGCQ
QEGHKISECPEKNKKKNKDSKKSSAYFGEDGGGVCFLSGQSLPNKQQVAWVVDSGSSEHLTNDRALFHQLTPMQDPMTIA
VAKEGESIVAKHQGEVRLFSVVHGKSIPVCLKNVLYIPDARVNLLSVRKMEMAGLKVTFADGKVVVLRGSEVVAVGERRG
KLYELNFSKSDCANDSSFYSCGRVPKELETWHRRFGHLSASGLEQLVRNEMVVGLKANVRKGSEEIICESCVAGKQTRRP
FITGEGRQSRRVLELIHSDVCGPVTPVGVGGEKYFVTFIDDWSRFTVVFLISSKDQVLGAFRNYVAAVSAKFGSKISRLR
CDNGGEFKNGAFLNFCKQKGIQVEFTVPYTPEQNGVSERKNRTLVEMARAMLEDSEADRRFWGAAIQTAAYLTNRSPSRA
LDPKVTPFEIWEGRKPNVEKFRAFGVDVHVHIPKEHRQKLDAKSWKGVFVGYSPNGYRIWDPKRKRIVVARDVIFVEEKV
VGAKPPGQRTGGCSDGDVVRVPVGTDTRTQCDESDTESDGRHGGAGSDRAxWRGAEEDSFDSCVDDTIREESEPEPVGHS
RPVRNRSAPAWHGDYELDMTGFALNAASFVEDLPCSIAEMRKRKDWPKWEVAVREEMDALSRNHTWDLVKLPEGRVPISC
KWIFKVKRADDGRGDHYKARLVARGFTQRHGFDYSETYSPTAKLDTLRTVLAVANHERMVIHQMDVKSAFLNGSIKEEIF
MTQPEGFNAGNGLVCRLNRSLYGLKQASRAWNERFHVFAEKLGFRRSSSDKCLYIRESGGHKLFLIIYVDDVLLVGHQLK
AIQVVKQCLSKEFEMKDIGEVNCFLGMKIERKVEQRVLRISQRAFLERLLQRFNMSDCKPVSTPIENRLRLQRGEESKRT
DKPYRELVGCLVYVTLTTRPDLSAAVNFYSQFQSCPTEEHWRHLKRVLRYIRGTLDLGLQFEGDDNAPVIEAYSDADWGN
DTTDRRSLTGYVFRVYGCTTSWLTRKQSTVSLSSTEAELIALCVAVCHGTWVMRLLEDLGIKPDGPVVYHEDNQSAIRVV
EEERDSGRLKHIDIKFCFVRDLIQRGLIAMRYVPSANLQPADIMTKGLPAKLFLQHRTALGMRVSGN
>Copia-112_SB#LTR/Copia 35-4497 via tfasty with Copia-49_SB, 3 frameshifts. [Sorghum bicolor]
MTSQSPSNKKPLDDGSGMNEIKPSRSPPRRRGRSHSRRRSSSRVVERVIERSSANVAWPMLTRTNYPEWALVIEVNFQTL
RVWETVELGIDEDADEDDYQHDRQAMAGLLRSVPSEMWGTLARKRTVKEAWDAVKVLRIGDDRARDASAQQLRREFAALV
FKEGETVSEFGIRITSLATNLRILGDNITDAEVVKKLLQVVPDRLSQAAVSLEMFLDLSNTSIEDVIGRLRVFEERGKPK
EITDGMGRLLLCEEDWEARRKSRREQESSGGSGGSNSRGKNHGRGRGRGGQGATRDDHDGHGAGAGNPGGGKPPPGTACK
KCGNKGHWARDCRCKKKKVAAHVAQAEEEEERALMYIAAETEVIASPASSPLSTPPPPPAANARAHVHLAEPKVLFHLRE
DEKEAVGPCRWVLDTGATNHMSGSRSVFAERNSGITGTVRFGDGSVVNIEGKGTVLFACKSGEHRRLEGVYYIPRLTTNI
VSIGQLDEDGFKVLIESGILRLFDLQRQLLAKVERSSSRLYFLDMNIVAPVCLTARAGDVAWRWHERFGHINFQSLRKLG
RKDMVRGLPSIDHVEQVCKDCVLAKQKRTPFPKAAKFRAAEQLELVHGDLCGPITPATPAGNAYFLLVDDMSRYMWLTLL
RSKADAPAAIMSFQARVERETGKKLKVLRTDNGGEFTSVTFGEYCAGEGIQRHHSTPYTPQQNGVVERRNQTVVATARSI
LRARGVPGHFWGEAVHTAVFLLNRAPTSALTDKTPYQAWYGKKPPVHFLRVFGCVAYIKNVRPHLGKLDDRGRKVVFIGY
QDGSKAYRFYDPVDERVHVSRDAVFDEGASWEWGAASDVTEPHPFAIAEEYELRRHQLEGPAPEPVSPEPRAPAPTASTS
SGPRTTSPGAQSAPTILGAPSTPQGAGAHVEFATPLTTDPNLDDDDDEVVHRYRTLDNILGTDASPGLEHHDAVEAELHT
VSHAVSVEEPRSIKEAEGDPNWVGAMEEEMKSIRDNQTWSLVELPQGHRAIGLKWVYKVKRDEKGNIAKYKARLVAKGYV
QRPGVDFEEVFALVARLESVRLVLAIAAHFGWGVHHMDVKSAFLNGELQEEVYIHQPPGFIDDKHKYKVLRLHKVLRLHK
ALYGLRQAPRAWNQKLDAELLALGFSRCVNEHGMYTRGRGAERLIVGVYVDDLIITGGDADAVKKFKAQMLRTFRMSDLG
LLSYYLGLEVTQGAHGITLRQSAYAAKILDKGGLTGCNASATPMETKLKLQKEGTTPAVDATEYRSLIGSLRYLCNSRPD
LAYAVGYLSRFMEAPRQEHLAAVKRVLRYVASTVHWGVHYRPAGRRETAPQLTGYSDSDLAGDVNDRKSTGGLIFFMAGG
PIAWQSSKQKVVALSSCEAEYIAAAGAACEGVWLARLLAELIGGAVRAPKLMVDNKSAIALMKNRVHHDRSKHIDVKYHF
IRECWDRRLIDIEFVGTEHQLGDIILTKALGRSRFQELRSEIGMKKLG
>Copia-106_Mad#LTR/Copia 45-4064  [Malus x domestica]
MASNLVQLQVPTLKKENYERWCIQFKALFGSQELWEVVSSGYVVPTTEQEATYTADQRNTLKDLRKKDQKALYLLYQGLE
DSTFEKVAEATTSKQVWDTLSTIYKGVDRVKKVRLQSLRADFETAHMNEGESISDYHSRLIVIVNQMRRNGERLDEVRVV
EKILRSLTSKFEHVVTAIEESKDLEAMSAEELLGSLLVHEQRIQKNASPTTLEQALESKLNIDKPNGGRGQWNSRRGSSS
NRSRGRARGRGRGYEQNRGQSQEWRSTRGKAHIQCHTCKQYGHYANECSYKNGEHVNMAESSGNAGEELTVLLAHHDISS
QQDVWYLDSGASNHMCGKKEFFAELKDGPYGSVSLGDSSKLPVEGKGKIKIIQKDGREEYISDTYYIPGMKSNILSIGQL
LQKGYIIHMEDMFLTLRNARRKLIARVQMSKNRMFPLKLNTKIGSCNIGVMEDESWKWHLRFGHLHFNGLKLLSSGGMVR
GLPQIEATRQVCEGCVLGKQARLSFPVGDTWRAKAPLQMVHTDICGPLDPMSYGGNRYFITFIDDFSRKTWVYFLKEKSA
ALRIFKEFKALTEAESNHKLVAVRSDRGGEYTSNAFQAYCKEQGIRHQLTAAYTPQQNGIAERKNRTILDMTRSMLKEKN
LPKELWAEAVACSIYLLNRCPTKSVKRMTPQEAWSGYKPSVAHLRVFGCVAYAQVPEAKRRKLDDRGEKCVFVGYSEESK
AYKLYNPLTGKLVVSRDVIFSEEEAWKWNNKEVSKEKIVSTDFEEPEVVPPVEQQPAQTTTTTPLHRTARSGPTSSEESS
SSTPVRLRSLTEIYGQEEEEETNLFCLYADHEPLSFNEAVEEDRWRIAMEEEIHAIEKNDTWELTKLPPNQKAIGVKWVY
KIKRTADGSVDRYKSRLVAKGYKQKYGVDYDEVYAPVARLDTVRLLISLAAHHKWKIYQLDVKSAFLNGVLEEEVYVEQP
EGFQVQGEEDKVYRLKKALYGLKQAPRAWNSRIDNYLHQNGFQKCPYEHSVYMKNGAKGEFLIICLYVDDLLFTGNNEAM
FCEFKQSMFSEFEMTDNGLMSYFLGIEVKQESDGIYISQQKYMRDILEKFNMDKCNIVNTPVATGLKLSKEGEGEFVNST
VYKSLVGSLRYLTITRPDIVYGVGLVSRYMETPRESHWLAAKRILRYIRGTLNYGLFYNFGEDAKLFGYSDSDWGGDQDE
RKSTTGYVFFLGSTAFSWTSKKQSIVALSSCEAEYVAVASTVCEAIWLRNLLKSVCHPQVESTVIHVDNMSAIKLAKNPV
QHGRSKHIDTRFHFLRDHVKQKTIELVYCHTKEQVADIFTKPLPVESFRLLREMLGMKAF
>Copia-105_SB#LTR/Copia 89-4073 via tfasty with Copia-74_SB, 1 frameshift and 3 stopcodons. [Sorghum bicolor]
MSTSPSTSSDKEVMERAFAQAVRNLMWPMLTRTNYQGWAAHVQCNLEAMCLWDAVQGDDKIERRHDRLALGAMLRGVPDE
MHPMLLNKKSVKEAWEAIKTIRLGADRVKEANAQKLLGEFELISFKPGETIDDFSIxISKLATDLKGLGETSVDDSRVVR
KFLRVVPARYSQVVVAIEMFTDMKKLTIEELVALLHFEKECKTKMDGEERQDQNHHAIAEQTEGALLVAQVCNLVRKTTP
GTQQVFLNQEKVFPVEYGDGSWVLDTGTTNHMMGCRDALVTLDESVRGAVRFGDGSTVAIQGIGAVAIVGKNEDHRILTE
VYYIPSLKCNVVSLGQLEEGECHIEIDHGIMTVFERRQTNLEKLGVLIRVERKNRLYMMKVNLTSPVCLLTKMDEQSxLW
HARYGHLNFRSLRDLGAKQMVEGIPLIKKAEQVCDGCALGKHNTAPFPRASTYRASNGLELVHGDLCGQITPSTPGGKSY
FLLLVDDHSRFMWLELLSTKDEALNYFKKFKVAAEVDSGCRLKAFRTDRGGEFNSRAFTMYCEENGIRRNTTTAYTPQQN
GVIERRNQSVVETAWCLLKSMNVPGRFWGEAVKTAVYLLNRSPMKSLNGQTPFEAWYGRKPSVRHLRTFGCLAYAKRIGP
GVTKLSDQSTPGVFLGYDPGTKGYRIYDPVRDKLIISRDVQFDETGGCNWGENGRRTDPEDKDSGDLAPQFTVEYADGAE
IRTVHHLTTVVDLANEPATPTTPAFPIPSEGGGNGGSPEEFGGPTTPHFQWVSPPSGASEGTDEAPRRYRTLSDLFDQTE
EMQGFEYSGVCLTAYDEPASVEQALSEDCWKRAMEAEMQSIEENKTWVVTDLPPKQKAIGLKWVFKVKKDPSGRIVKHKA
RLVAKGYAQRHGVDYDEVFALVARIETVRVLLALAAQSGWEVHHMDVKSAFLNGDLSETVYVQQPPGFSLGNAGKVLKLN
KALYGLKQVPRAWNAKLDKELLALGFQKSKHEYVVYRRGDEKSFLLVGVYVDDLIISGANVNDIRLFNQQMMKKFKMSDL
GLLSYYLGIEVKQNAEGITLSQAAYAMKILESVGMKNCNPCATPVEVRLKLSKKENEEIVDPTAYRSIIGSLRYLVNTRP
DLTYAVGVVSRHMEAPSxEHWTTMKHILRYLKGTVRFGYKYQRGYELKPLLLGFSDSDFAGDIEDRRSTSGAVYFLGRNI
VTWVSQKQKLVTLSSCEVEYVAAAAAACQGIWLSRLIGDLLGTKEVHVKLLMDNMSAIALSKIPVHHGRSKHIDTRYHCL
RECIEEGKVKVEHVGTVEQLANIFTKALGRIRFAELREKLGVIELQQV
>Copia-108_SB#LTR/Copia 38-4428 via tfasty with Copia-54_SB, 4 frameshifts and 9 stopcodons. [Sorghum bicolor]
MAFPHLASSSNTSATPSFAFTMTKTLAHNNYPILKLQVMSALRGAQVASFIESTAVPPVPFLKVEGDSKEEAKPNPDYES
WVAKDxSVLFFLLGSLSKEISGQIPTTVASARELWTAIEDMFASQSRTRIISTWMALTAVSKSTSTISEYFQKVKTLADE
MTSTGKKLEDEELVSYILSGLDIEYDAVVSVVASHVEPISLGELYTQLVSFEQQMEIRGGGGQQSSANLAAKGGHGNQSx
GGGHGNRGSFARGGRGGRGGGGRYGNSNFLSGVFCQLCEKEGHIVVKCFKRFDPNFTGSPQKSVSSATTNSYGVDTNWYM
DSGATDHVTGELEKLSVRDKYVGGDQVHTASGVGMRINHVGHTTLHSQTSKIHLNNILHVPHANKSLVSVNRLTRDNNAF
VEFHPNHFLVKExVTRRMLHSDRCENGLYPLKLSSSKxVLGVFKPSISLWHRRLGHVATPVVQEVLSRHKLSFVRDQENK
MICDACQRGQSHQLPYPKYTSVSSSPFELVFFDVWGPVPTSVGWHDYYVSFIDDYSKYTWIYLLRHKSDVFRCFNEFxNM
VERQFNSKIRAVQSDWGGExKSLNSFFSRIGIAHLVSCPHAHQQNGAAERKHRHIVEMGLSLLAHASMPLKFWDEAFLTA
TFLINRLPSKVIDHQTPYEPLLKKSDYSFLRVFGCAVWPNLRPYNSKKLxFRSKxCVFLGYSNQHKGFKCLDPSDGRVYI
SRDVFDEAVFPFASLHPNVGSRLRAEIALLSPSLAPTFTEFGNAILVDKHDNSRPTNGASSPLMASGTAGLSLEENTEET
VPNSHDFMCWGGLETIGVSPGDDSGGNIPLVSSVPxHGSSLESALEGEVSEPAPSTVPGSGSSTPSPEATSDESPPGLPQ
TNPATGPQADRLGRSSVEEMTATSITVVAPSPEHLTAPSPEHLRPSTRLQHGITKPKVRSDGTVRWCMGVVLNQENASVN
EAFANQNWISAMDSEYVALMKNQTWHLVPPPQGKNVIGCKWVYKIKQHADGTIDRYKACLVAKGYKHRYGLDYEDTFSPV
VKAATIQLILSVAVSRGWSLRQLDVKNACLHGVLEEEVYMHQPPGYRDKNRPEFVCRFDKALYGLKQAPRAWYARLCSKL
VQLGFTPSKADTSLFYYKGHTVMFVLVYVDDIIVASSSCEATSALLKDLEKEFALKDLGDLHYFLGMEVKRTEQGLVMSQ
QRYAADVLKRTWMNKSKAIDTPLLVSEKLSVNDGSPLGLEAASNYRSVVSALQYLTLTRPDLAYAVNKVCQYLHAPSTAH
WSAVKRILRYVQGTISLGLCFNKSSYMVVSAFTDADWAGCTHDRRSTGGFAMFLGPNLVSWSARKQSTVSRSSTEAEYKA
LANATVEVMWVEKLLTELQIPHSKVARLWCDNIGATYLSQNPVFHARTKHIEIDFHFVRERVVQKLLDIRFISSNDQVAD
GFTKPISTAKMKHFRFNLNLVGG
>Copia-112_AA#LTR/Copia 116-4120  [Aedes aegypti]
MADFKGLAFEKLNNRNWSTWKFRIEMLLTREEVWHVIAEPKPEPVDDRWKKADQKARATIGLCVEESQYSLVKSVDSAKG
YWDKLCAYHEKSTITTQVALLNKLWSMNLSEGGDVECHIRELEEVYDRLAAAGHVLTESFKIVLLFRSLPESYQGLATLL
QSQLDAGTTMEAVKAKVLEEFERRNERSGRVSGSASSEATAMKSATKKSREKSGAVKTCYHCGKPGHLRRDCRAWKNAKQ
GDDEKKKPEAKQSAKKANDDESYVCFSATNSAKNNEWYVDSGASCHMTNDEQFFTKLVKKSGPSVVLADGKVVKTAGCGY
GTLRGVSGSGNVIDVKLTDVLLVPSLTSGLISVDKLTSKGFTAVFEARGCEIRDKTGEVVVVGDRYGGLYRLKLGEASRK
VEEKAHNPLCQHQWHRRFGHRHPGVINRISDEKLGNGMKVVDCGIRLTCEPCIEGKLARNPIPKAAERKSTLPLDLVHTD
LCGPMKTTTPGGKRFIMTMIDDFSRYTVVYLLAKKSEAPGKIKEYVRFVQNLFGRKPKIVRSDGGGEYCNQELRTFFAEE
GIKAQYSTAYTPQQNGVAERKNRSLQEMARTMLLDASLPTRYWGEAVVAAAFLQNRLPSRAVDTTPFEKWHGRKPELGYL
RVYGCHAFVHVPDVKRGKFDGKARKLRFIGYSEEHKGYRFVDTSTDKITISRDARFLELDDGSSHGLAKDPSQEPVNTEV
VWPLKENSDQQAEEEDVPAELPEDQDEDSMFFDLEDQDAEADPLAVKQEEEDSEEEDREEAARSNQGAGVRQSGRRTRGV
LPNHLSDYVVGVAAHSELEPVTFEEAMSFPERDAWKSAMDSEMASHKKNGTWELVPLPKGKKLVGSRWVFKLKRNECNEI
VRYKARIVAQGFTQTPGVDFGDVFAPVTRHATLRTLLALAGKKNLVVKHLDVRTAYLYGNISEEIYMKQPPGYVARGKEE
LVCRLRRSIYGLRQSARCWNERLTEVLKKMGFEASDADACLFVGTVNGKKVYLIVYVDDFLVACESEQVITSVFEQLRKS
FDIRCLGDVKRFLGLEVQKKDDVYSVSLTNYIDQLVARVGLSEAKVXKTPMDKGLLGDEVNDKPLEDXTKYRSAVGALMY
IAVCARPDIMXSAAILGRKFSAPXESDWTAAKRVIRYLKGTRDWRLILGGDNEDLVAFSDSDWAGDTGTRKSTTGFVLFY
SGGAVSWASRRQDCVTLSTLEAEYVALTETCQEVVWMRRLLRDLGEEQTTATVVHEDNQGCLSFAQSERSSKRSKHIETK
RHFVKNLCERGEVALXYCPTEDMKADVLTKPLGRVKHHHFASELGLVGGVPSVKH
>Copia-109_AA#LTR/Copia 76-4186 via tfasty with Copia-11_CQ, 1 frameshift. [Aedes aegypti]
MSVNDVEVKAGGQPANQRQEVENRTERGAFERQLPYTAVAVRDRAHIFDGSERMFAAWKWRMEHHLSMMDLIHTLVRTPY
EEEYATPVAGNSEAQEEVRKAKLRKRINDDMNALDEIVMWVNNDVLNKLIGVSYAKEAMDLLVKTYQKVGTGVMIAMRDR
LFSIKNRKHTSISALFDEYDPIIRELDRMGTRMDQSEKMAALMIAIPERYQHVKGALTVLPSDELCKKPLVEIKRMLLDA
EQSETMEVDDEPVVPDVALKTTRRVIECFGCGKPGHYKNKCPLRRRSWQRRRRSGLFIRQGHAMLAGEKKKESRKVSFAV
DSGASSHMVNDEKLLQRAVKLATPVTISTAKSGETLQAVKKGKVTLKSVVGLNKIKRIELYDVLFIPDLEENLLSVRKIN
SMGKRVTFQDKEVRIEDKGEVIAEGKNKNGLYCVDMFLEHTVDQAALFSQRKVSLTDWHKRLGHLSFSGLEKLLKNNMVD
GIDISSNDLVKQYEVCESCLAGKQSCKKFLSMQLPRSSRPLELVHTDVCGYMEQSTYDGYRYFVTFTDDFTHFTVVYLIK
RKSDVFDRFKEYEAMATAHFGQKLSKMRCDNGREYLGKDFQDYCRNKGIRMIFTVPYTPQQNGVSERINRTLMEKVRALL
HQSELSKEMWGEALYVAAYVTNRSPTNALVELKTPFEMWNGRKPDLSNLKMFGSHAYKQIPKEKRHKLDSKTKRLTFVGY
ANNGYRLWNKNNRVIEISRNVVFDESIVRSNTTTEDVHLPIVVREQKHCENEDKEEEISICNEDESITNKDDEEEVIRLP
EPEEEVEAEEVVIIETYDEVFADAEEDEGIDEQQSELRRGTRKRKVPQRFQPSSAKIASATFDEDAPETVAELKKREDWE
NWKIAIDEELNSLHENKTWTVVNCLPRNQKAIHSKWVFSVKDDGRYKARLVAKGCSQRPGFDYQDTFAPVARMESVRTIL
SVANKNGLFIHQMDVKTAFLYGDLEETIFMKLPNDEIGNSQIVRLQKSLYGLKQASRSWNRKFDDEIKKLGFIPLKSDCC
VYTSRAKDLILILYVDDILILGKQESQLNWIKSELGKLFQMKDLKEVKHFLGMDIHRDYQNQIMEISQAGYAEKILKRFG
MSESKPVSTPLDPNVRWVKSNDDELTSHPFKELLGCLQYLALVSRPDISAAVNILSKYQASPSNAHWTGLKRILRYLRGT
MNTKIVFSNREHSNVLLGFADADFANDIDDRKSISGNSFLVFGNLVSWSTKRQQTVSLSSTEAELISLCQAAKEGLWLTN
LLNELGIESSPFIIMEDNIPCINFTEEPRSHQRMKHLDLKFMFIRELVRSRKLKIEYISTVDQPADAFTKGLPAAQHRKL
LNILNVRIEG
>CfERV1_pol#LTR/ERV1 2064-5673 via tfasty with MuLV_pol, 1 frameshift and 1 stopcodon.  [Canis]
GSQGSAPLPEPRVTLKVEGQPVEFLVDTGAQHSVLLQPQGKLANKTSWVQGATGTKQYSWTTRRTVDLGTGRVSHSFMVI
PECPYPLLGRDLLTKMGAQICFHPEGAKVLNKKGHPIQVLVLSLEDEYRLHQMPSAPMTDIDRWLREFPQAWAETGGIGL
AQHRPAIYIELKPGADPVRVRQYPMPLVARKGITPHIRRLLDSGILRPCQSAWNTPLLPVQKPHSNDYRPVQDLREVNRR
VEDMHPTVPNPYTLLSTLPPDKTWYTVLDLKDAFFSLPLAPRSQDLFAFEWTDPEKGINGQLTWTRLPQGFKNSPTIFDE
ALHEDLGEFRSEHPHLTLLQYVDDILLAAEDQDTCLRGTRDLLQTIAALGYRASAKKAQICRTEVSYLGYKLKDGQRWLT
DARKETVLRIPQPQTVRQVREFLGSAGFCRLWIPGFAEMARPLYEATRHQQNFEWTEAMNRAFNDLKQALLSAPALGLPD
LAKPFYLYVDEKDGVAKGVLVQYLGPWKRPIAYLSKKLDTVAAGWPPCLKIIAAVATMVKDADKLAMGQELHVTTPHAIE
GVLKQPPDRWISNARLTHYQSLLLNPTRILFKPPTTLNPATLLPNPDWDPPLHDCQEILAQVHGIRADLQDQPLPNADAT
WYTDGSSFVREGXRYAGAAVTTETETVWAEPLAAGTSAQRAELIALAKALTMGEGKRINIYTDSRYAFATAHIHGALYRE
RGLLTAEGKTVKNKTEILELLRALWLPKALAIIHCPGHQKADTPVARGNRLADLKAKEAALLVTQVLXTTLPDPGAPTLP
DTPNYTDADLHWIKRLPMTQCLRGWWRAADSSIILPEELGRRVLSKMHRSTHMGTRKMEDLIRHAKITIKDSRAKIEQIV
ASCRACQLXNAXAHGSNPGTRLRGDRPGAYWEVDFTEVKPGKYGYRYLLVFVDTFSGWTEAFPTKHETAQTVTKKLLEDI
VPRYGFPCxIGSDNGPGFVSKVTQGVALVLGADWKLHCAYRPQSSGQVERMNRTLKETLTKLALETGGDWVTLLPFALYR
VRNSPYKMGLTPYEIMFGLPPPVIPNLKPEVLAEFDDHQLLFSLQMLQRTHEQVWPKLRALYETGPPPDPHRYRPGDWVY
VRRYQHQTLQPRWKGPYIVILTTPTALKVDGITPWVHYTHVRPADPHAVLKDFVPEWKSQPDKDNPLKLRLRRSHLFPTS
KTP
>BaEV_gag#LTR/ERV1 187-2043 (no M) [Papio cynocephalus]
REDRRVLDPHTPTPGDAPAVVWRKADDTVSLLKSEGRFPLPSESLVVLWRHSLAARLICFCLVCVVTVVLFICVYEPKDG
TMGQTLTTPLSLTLTHFSDVRARAHNLSVGVRKGRWQTFCSSEWPTLHVGWPRDGTFDLSVILQVKTKVMDPGPHGHPDQ
VAYIITWEDLVRNPPPWVKPFLHTPSTSKSTLLALEVPKNRTLDPPKPVLPDESQQDLLFQDPLPHPPHNPLLEPPPYNS
PSPPVLSPVSPTTPSAPTPSSLVSSSTPPSSPAPPELTPRTPPQTPRLRLRRAEGQDGPSTWQSSLFPLRTVNRTIQYWP
FSASDLYNWKTHNPSFSQDPQALTSLIESILLTHQPTWDDCQQLLQVLLTTEERQRVLLEARKNVPGPGGLPTQLPNEID
EGFPLTRPDWDYETAPGRESLRIYRQALLAGLKGAGKRPTNLAKVRTITQGKDESPAAFMERLLEGFRMYTPFDPEAPEH
KATVAMSFIDQAALDIKGKLQRLDGIQTHGLQELVREAEKVYNKRETPEEREARLIKEQEEREDRRDRKRDKHLTKILAA
VVTEKRAGKSGETRRRPKVDKDQCAYCKERGHWIKDCPKRPRDQKKPAPVLTLGEDSE
>ERV1-1_Gav_env#LTR/ERV1 5556-7046 [Crocodylidae]
MLSLLLLCLLPGVPVGAWEENSVVFLGQSIAHAGNLTNCWVCIHGPMHPTKGIPMLGVPIPLEVWGTDSNTSFVRFSPPS
SRNQLSIPTWWKAARDSWKLSSGLEAALCYKFNRTGRTGEAGYFVGHYPRCKVTFTWPWTEKRGKVSGEVQSHFCDGAPI
AIFTPSDGNYSVMSSLVLDGFDFYVVLGPVSCNQSISHXRMVESQRAPSYTLQVNRKCREGNTPCRDLSTAAAPGLYWLC
GDDAHKTLPWNWVGTCTLGRVVPTFDLHSSLSWHEVSNFPPGLPRHRRAVENPLVLRHTGFHQFTRAFLPWLGVAELEKA
IINISGVMENFINASADALGALNDEITQVGQVAVENRMALDYLLAAQGGVCAVVNHTCCTWIDQHQRVQGDLRTIRKQLQ
VIHAVAEEKFFDWWGWLPNIGGWVKSLLKWCIISVLCLFALFIIIQMILCCSRLCLAKTAQSVSRLSATELQMMVLREVA
YECERQEEVKGLMNIEM
>ERV1-4_Crp-I_1p#LTR/ERV1 6191..7564[Crocodylidae]
MGSGESKDVPAPPKGTPALYMYTHYGHKSCKFLDKWNWYTRDDFSLQFPLEGTFDLSKIVHLRGDLESRGSNTPQTQWDT
FFDWYEEASKRRQESQVRSLKDSQEKLKSQIKELKQKSAPKGDPPSITTAPSAPTQLYPQMTENESAEDIIDFISVPTPY
QSQAQSEPEEVQSNQIDSSGGXSPPHQEPITQQPSPAPGACPHPLEAWRLSPEASTPSSCLRSGTQYGPAPSSKPKKAXQ
MPLRQLPGQGPNGESTVTVHAPWTPGDLLNLVKQFPNIREEPQKFKDELETVIXCYDPTWADLNQLMRSVLPSEVRDRLI
TQAKWPAQDPGRGGHLAGARERLLEAVLKICPRKTDWAKINNCKQNKGESPADYMDRLKLVFERHSGIEKAAETAPEAVA
AAFVQGLLPKVQEQLCTIAVGWQTKTLAELVTIANHCTTCQEKKKEXTETKLMSLQLQTLGRGRGRGFHRGQFRGRGRGR
GMGQGGFQSQISDSCHYCGQPGHWKAQCPHRPGQPGMTFNLPPPPLTQFSVPNQGASCASLRNSNVITAPLLPLNQDDPF
VSCVINGISTKCLVDTGASRSTLRAEEFSTTPLSSAVVNAVGISNQIVPHPVSQPLHVSLGPVSDQHAFLLSPCSPVNLL
GRDLLCKLGCTIYCSPNGVYLDVPCDNEMAVLAALASSPPEPEFPDLSVLQEEIIKAVPPFLWSQHANEVGQIHTAQPVK
IRLNPAKPLPKVAQYPLRPEAEEGIRPVITALLKQGIIVPTKSPCNTPILPVKKPGKNTYRFVQDLRAVNSAVLPTFPVV
PNPATILSCIPPNACYFTVVDLCSAFFSIPIHPDSQFLFAFTYQGLQYTWTRLPQGYTESPSLFSQILKKDLDDIVFKES
SVLVQYVDDLLLASTSLEACKTDSLTLLTSLALKGHKASKEKLQLCLPRVHYLGHDISAGERLLSSSRIEAILKIPRPTT
VSQMRTFLGMAGYCRQWILGYASIVKPLQNLTLVNTPEPLPWTSETEAAFAFY
>ERV1-4_AMi-I_1p#LTR/ERV1 507..2099[Crocodylidae]
MGQKQSIPTSSPLGELLSNWNKLSGHGQLSKKRAIALCTSVWPGYTYENPELQWPVLGSLSVDKLRYLKGFLEEPHPRQM
DYWYLWCDLTDLIPQGNRPLLAAQQCQTAVSPPPYPHPTASETDDWRPTMPPPVTGGPAAINPAASAMALPAPSTPPSGS
SPPATGVSGSIPAPSEPTFSPIAGHTRQRLNQVIQMPLRQYPVPTADGIQYPYTHIPFNPQDLQAWQQGTPKFRDDPEAV
RRKIQTIISTHNPTWVDMNQLLDTLLTSAEKLDIINQGNQWQQEEPAGRVPWPLVNPNWEINGDNHERGRLQLARQTLLE
GMNRAGCKTTDWTKVTSVVQGPNEHPQDFYSRLLKAIATHGGSFDVQAPQNQTIVASTFVGGCASDIKKYIVKYNPDWNT
KTIQQLVDLANHAFDRRPEVQKAEKLKMKQQEAKFLAAALSSQFQPKGRGEGEVIGGTKGGLIPQGNLPPMICVIIANNW
GIGNESARTALGDPPPYGGRKGGTQGNNRAASTDPTDPWIQGLQQDIDDSQ
>ASSBSV_pol#LTR/ERV1 gi|83722645|ref|YP_443922.1| polyprotein 760-2146 [Atlantic salmon swim bladder sarcoma virus]
RCPPPPEAEVQRYSVYTEPTVSCQIEGVNHRFLVDTGCTYSAIKTMQPLSMDSIQVVGVSGRPETQLKTQPLLFRWGPST
VRHQFLYCPNCPINLLGRDLLCRLGCFINLTEDGVEVSINSPKSGRVLLLPSLPVPPLSLTQEVYWLKCTQTGPSTPAIQ
FQFNTWRRLIYALHPYKTPLPEVHCTMNVTDDEDNPYTEDWDENMSHQTPSIRCLSIVCGPEGVAAPVILPSHLKPWYQL
APDSSPHVTLAVGNGFEARSLGPMIRRASKLDWVPTATPGIMKASTEQMWRIVLVDTTEICKPERLSLPRHHGKPYSDHP
SATALLDSIDEAIWTTSPFDVGRLAVPPVRVQLTHQGQLPVYRSQYRLKYEQIEGIRPTVEGLLGADCIYATSSPWNTPI
LPVPKADGKTYRMVQDFRAVNDVTTGVDLPVPDPHVSLSNLSPKHQYFTVVDLANAFFSIPLHVDSQPLFAFTYDNQQYT
YSVLPQGYRCSPGIFNRVLKDHLKEIVIPDGVVLIQYVDDLLLAACSSDQCLAATKILLDFLATKGYKVKRSKVQTCRRT
VLFLGREVSAEGAGLSTAHRNSILHHPRPTTVSGLLSFLGLTGYSRTHIPDYTCRTEPLREIVRQAGARNLHASLIWTPE
ATCAFGLLKTDLSVAAALAAPDYSKPFHLDVSEKEGFASAILFQKQEGERRVLMYHSSKLDHIETGQTTCSRYVAAVAKA
IEKTAHLVMCHKMEIHTHHGVAAYLTAKEFTFSADRKNKIQNKCTQSHITFVNTDKNMADALNADEGSPHVCAERAAQEL
KLRPDLGNDPLPQADLWLYTDGCCYRGKDGNIAAYAVVQQDSNGNHSTLESGVIPQPASAQLAEIIGLTRALTLAEGKTV
NIYTDSAYAHGAVHIDGPQWLRRNFTTTGNLPIKHKTQMEVLISAVALPKKVAIMKCKGHQVLNSRISKGNDAADQAAKK
AGGYSPGQMVLRVDPPSTELTVEHIKELQQTAGPYEHSVWKQKGASQGPEGLWRCHDGRLVAPANLCPELIREAHGLTHE
GKLKTLQRVSYTWWHPYMKEMTDLFCDNCTICGNYNPKKPYQTPMGHYPVPNACFQDISIDYTDMGADQVRGGKRYLLVM
VDRFSRWVEAIPTAKEDAKSVIKWLQTELIPRYGVPRQIRSDNGSHFSNQHLRQVEERFGIVHKFGSVYKPQSQGLVERC
NQTLKAKIAKVCAGTKLTWVEALPLALMAMRSSPGAGTHLSPHEIMTGRVMPGPPREGGHMPALDVHQIGMTDYVRKLTE
LSAALSIQIQRVAEGELTDDQDQPRVKVGDWVRIKVHKRKWADPRWTGPYEVKEVTSHSVQVKGKSGAPWHHLTHCTPAP
APDRTLTEVRSDLIASNLAINSESPDN
>SpPat1_gagpol#LTR/DIRS Strongylocentrotus from_retrobase [Strongylocentrotus purpuratus]
MEPMDIAELVRGEVRDSQNTLLDKLETLVSDKLNHFQKDINDSQMAMSEVQLSKMEEITNTTYKFKKKGNEEQYKSNTKV
YQKLSEAESLLKKDADLSRASTAAQNKIAEGKDILEHRQKIIKLADQSPFGWLTVSEYETNSLARDSDDEKRIWKAEARA
KRKMNQAPRRKIASRNQIRPYPTDRQPASQQSSRPWSNPSSKTEGWDFKRKTGACFACGKFGHWRFECRELASSREARNE
KISKNSFDIQLNDMKVHKRNAFADKNDSTESRLNSEKNCKVVTPVGRLKSAKDKWKEIGTNEFILDIISEGYKIPFITRP
KKTESKNNRSAIQNAEFVGKEIQNLTRKGCVTEVFQKPEVINPLTVAGNKEKPRLVLDCRNINPHLFKQKVRYEGEDIAK
EMIEEDDYMFTFDLKSAYHHVEIFREHRTYLGFSWDYEDQKRYFIFNVLPFGISTAGYIFTKLTRPVIAHWRSQGNNVIM
YLDDGLVICKDRMSAITLSRQIREELKQLGFLIAEEKCNWNPTTRQTWLGLDWVTSENKVYISQRRVGKLKKNIENLLDR
MQSNNDIVHVKELARVAGQISSMHTAMGQIVQIRTRNICNSLNTKASWQAPIKVGREAKDELKFWLHHVERINGIEIKRL
PFVAYTMFTDASETGFGGFVAEKEDLELVGSWSNVEAVKSSTWRELEAMKRTLFSFERELKGQNVQLNTDNKNVVSILKK
GSKKSELQEQAISIHNKCESSNITVDPVWIRRETNCKADNLSRRGDSDDWFITDEIFGYLDSKWGPYDIDRFANEYNAKC
TKFNSRWWCSQTNGIDAFSQSWKEGRNWWVPPPRLVGQTIVKIMKEKAQGTLIVPVWKSAPFWPKISHNGEFVHFIREVE
FFDSGITKKGRGNNGIFGNQRYRFGMVAMEIAF
>Kangaroo-1_VC_yr#LTR/DIRS gi|22415759|gb|AAM94959.1| recombinase [Volvox carteri]
MDHLWSGFQASTTSLTRLLLLRDLLCCQFMWHTSYRGHDTGKLRLRDFRDPRGGGPFRGFPLPLPDPFGAYPSLSLRIEQ
LGTKTSKGRRAPPLELRPDPSPRHCFLRTLALYWQLCHAPDAPPGSAISDYLFRPTDRGHQRFVERPFSSSALAMRVGKH
LEEAGVYVGQTPHGFRRGTIQATQAAGASRAELHAFSQIRSAQVLERYTDASRPTRVPRGSGPRS
>TcDirs1_gag#LTR/DIRS Tribolium.castaneum  from_retrobase [Tribolium castaneum]
MLGSQSPPPEMMGKPIHEEVAQVWEQTLQKGLDTEEIKDLLQKYPPIANCKLVQAPKLNAEVKRAITQQHSERDERLAHV
QAQLGAAMGAVGTALTFCLQEEGGTTSQLIELLGDAGKLLASVHFAESQSRRILASAGINKTFKSTLTGTPVDGWLFGDN
LSERMKTTRALEKTSEELKIPKAKINTGKTQYNLNSKSLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRPRTSRT
EPPRRKH
>pSIVgml_pol#LTR/ERV-Lenti 1031-4287 via tfasty with FIV-Oma_pol, 1 frameshift and 3 stopcodons. [Microcebus murinus]
ARDDTSAAFCTGTSPRGRDGVVPHPQGIIKLDHRPLVTLKVGRQSVTLLIDTGADNTIIHPKDWKPVGMEEGIINIGGIG
GSQKGILYKQVPISLADRQIRRTVIRAVTPINLLGRDNLVSLGIGVVMLMAQMSVKIVPLPVELMPGCDGPRVKQWPLTQ
EKYQALAEIVSKLEKEGKVSIAEVSNPYNTPVFAIKKKSGKWRMLIDFRVLNARTKKGAEFQLGLPHPAGLQKKDNVTIL
DIGDAYFTIPSDPTFKKYTAFTLIPPNNQGPAKRFVFNCLPQGWVCSPAFYQRTMSDILQLWKQAHLEVMLYVYMDDLLI
GTDLPLREHRRLVQELRSMLLGWSFETPEENVQDQWPLQxMGYELHPNNWQLQVRKLELPDHPTLNEVPKLVGIINWASQ
IISGLKIKKLTAMMAGNQDLNRKIEWTKEARKEAEEAAKLLxELPAGGYVDPLKQVEARIAFVGFLEVTYDVHQENIILW
CGRVGSSKAYCNRCDLYVKAAIKIGRETLIRLGVVPILTVPVAKDIWDSFAWTAGEVAWFPEVRHQAPPLIVERWMKMVS
EPIKGARTWYIDGSKKRAQKARAGIWTEGEKAQVQELEGSNQKAELAALLYALQQEDQELNIITDSQYVMKVLRLVPWVS
DSPLVQSIIQAVEKKQAIYLDWVPGHKGIPGNHKIDEEIQYWQGLVIQGTGILPKREEDVGYDLQIPEDVYLQGLERRSV
PLNLxVQWEKDQWGLIVAKSSMAQMGVIPLGGVIDSGYRGPIIIILWNLNRKAVLLKAGKRVAQLVIMSLLHEELQQVQQ
VKIDTARGEGAFGSTGTYFLEAIPRAESDHELWHSGVKALMQDFGISQMVAKAIVHKCPNCQGKGSAITGVVDYTPGTWQ
MDVTHWEGHKLLVAVETASGLTWAKTIPDETAKTTLLATLELHSVFKVSHLHTDNGLNFTAERFTNALAWLGIKHSTGIP
YNSHSQGVVESTNKLLKEMLHKIRPKMETVHAAVYMALFVINFKQRGGVGGTTRYERHLDMGLEDLQNYHFKNLDSYHVY
FKQPPQKTWQGPARLLYKGQGAVVCEDQGKTIAVPRRYCKIITGGE
>pSIVgml_env#LTR/ERV-Lenti 4810-6555 [Microcebus murinus]
MQWLTQRAQEWRGYCQPMNCTXANNFTRNCTRPYVDYESRPENIQETISHMQLNCTNSTCVWKECKQRLFFRGNPPLDAQ
TFRLCVRPPFALRRCPPTNRTDWRQPYKCSEQCLTSCTEAVNITVETLWQSQGVLNPNQTGVSCYQEGMRVTVQTEHDPI
GIKVLQTVKIPKMTCNLTGAQNNSGQKGIVDPCYFLCYNATKKGRGGNGNPIVLISCKYNGTSGTLTNCERVFKVSMPGP
QDPLYYPTYPGEKWLLHLPMEETGDPVQCNASFQWLSRSVALHDTGVLKPNIYSSFGAEEAWRDMVENYIVYRFQEWTVV
PVQEGEIILSRPRREPVTIIMALISLFTQVRTAINVAAMHWAGTVVTAVGVLVDNEGLLWESQRRLGNLVDHLAFQVQVL
QARLQAMEYVLQVQESWSELGCVPSLCLTDIPWNDTWGVPNITQTWKEWDDQFWKNYGEARELWHRQFLEGRGKLAKIRK
DLAQTALAQKVKDALNSIPKWLWTGLAVIIVLIIIIQVACMGLKMLTKAIVSWAGFLALQPEAPRDVEPDAAIYKNNGYA
NGWRDYWQLWSGGTLFQMTRRP
>ERV1-4_Crp-I_4p#LTR/ERV1 6191..7564[Crocodylidae]
MCPNDTTMPFGTGKRPLPSSWFPRWSWLVVIWVVLSISFWAILYELDSPVIRNSVNQTTLPHRQRRSFHENVFLSLVNQI
GIDLNVSHCWICSHVPIYSTGGIPMIPVPLNATQMLAPYYSDFHGNETWQNVSCNRSDYVRLAYATPGKFCWTCNGSRVA
VGVSKCEVEFKINGAWFSNGSWISNYSPAGQFSGYYSQWMMSPRCNTGGFTALAGHYFVCGDKAYKNLPSGWRGTCYVSA
AYPAFTIRSHLPKGRIRNVREITENQRFWGIMFPSYGAGLAMSEIKKVAASLEKIANATADSFDKINTEMKEIRQMTLQN
RLALDYILASKGGVCALIGKECCTYIPDNSEEIQDLSKHIRKEAAKLHESDSWNLSSWFSSIFSSLGSTVIHSLLILFVV
FIGVCLVFMIIQCCLSCAAKQMRNSPSTRNEVYNLYVEIAESKEKEKLEVERLMAINI
>ERV1X2_ML_gag#LTR/ERV1 468-2043 via tfasty with ERV24_MD_gag, 1 frameshift and 1 stopcodon. [Myotis lucifugus]
MGQGSSSASVCTPPQCFLNNFQDFKKRAEGYGHNVNAFDLQKFCEREWPTFQVGWPDVGTYDLTTAFRVHHVVYGRPGHP
DQIPYIQVWVDILTEKPRWLQSCQNKEKKLGQRQTVLLASAKKDKTLSVLQDTGEEALPEVRPPRMLLPPPVPRGKxPGQ
EPRPSPQPVSVPPGAPVQGPAPLSPSLTRQGTAYGEREGGGEKPRDRAASAQSCSSYLPLRQAGPLDLGPDGQPFMVYVP
FSTSDLYNWKNQNPSFSQNPQGLISLLESVFFTHQPTWDDCQQLMQTLFTSEERERIKVEGRRFVLGPDGQPTSEQDRLE
AVFPSRRPTWNPNTERGKEALDQYRQTLLGAIRAAARRPTNLSKVTETVQGPNESPAAFLERLCEAYRVYTPIDPDAPEN
RRAVVVAFVSQSAPDIRKKLQKLEGFEGKSISELVEVAQKVFNNREDPTADLNTRMAKVLLALNEEKGPRGQRDNKGKRK
PPGNKGVRARLGKNQCALCKKEGHWKKDCPERTGKSTPVLVEEVD
>ERV1X1_ML_gag#LTR/ERV1 448-2136 via tfasty with PERV-C_gag, 1 stopcodon. [Myotis lucifugus]
MGQSTSTPLSLTLDHWSEVKGRAQNLSLTIKKGKWQAFCSSEWPSFNVGWPPEGSFHLPLVREVRNLVFQPGRHGHPDQE
PYILVWQDLCENPPAWVKPFLPPGSLPRSSVSASEPAILPVKPALPSPLPSAPPVLPDSQPDLILLDSSPPYASPQPLPL
HPQPPAARAPQQDDRLxPLAPGPPALVPPAPVPPPMSPSVASPDSTLEDALPLPGSGPAQRTRSRRPPDEGPVAITLPLR
PYGPTVDDGNGGDMPALQYWPFSSSDLYNWKNNNPPFSEDPTRLTGLVESLMFSHQPTWDDCQQLLGTLFTTEERDRILL
EARKNVPGRDGRPTQLQNIIDDTFPLARPNWDPNTPEGREHLSSYRQALVAGLRAASRQPTNLAKVREVVQGPAESPAVF
LERLMEAYRRFTPFDPQSEDQRASVAMAFIGQSAADIRRKLQRLDGLQDLTLRDLVKEGDKVFHKRETEEEKEERKEKER
EERENARDKKKDKALTKILATVVGSSKERDRKGGSAGPRPRPNLDPDQCAYCKEYGHWKRDCPKRPRKGLQAKPPTLLAL
DED
>ERV12_MD_pol#LTR/ERV1 2902-6627 via tfasty with ERV25_MD_pol, 2 stopcodons. [Monodelphis]
GQESKDDNGKPVHANNTIASLQYEAEIQEPYVWIKVGDQNYKTLIDTGAAKSILKSFPGDTTIEGMVSVAGATGQIExVP
QLKSKMVTLGPLSIDHTFLLIPGCPDNLLGRDFLCKIGATLQCEQSGNIYLHLPKQSLKHYPLLFLGQLDETTDQQQAIT
SLYDIPTDIPQGVWAAHKNDVGMIKSVQPVKIEVKDCIPPKIPQYKLSKEAEEGITPIINSLLEQGILRHTVSEYNSPIL
AIKKSKPNSDGTVNWRFVQDLRAINNIIKKTHTITPSPNDIISEIPSNALWYTIIDLSNAYFMVPLHPDSQNIFAFSWKK
NKLCWTRLVQGCCESASIFCQLLKRDLENIKFKHSKLVHYVDDLLLASPDAKTCLEDSKRLLIELYKRGHKVSKTKLQWV
LPKVEYLGFILEKGTRKISSKRIADIQKLGIPCTKRQLRAFLGTTGFSRHYISGYSYISKCLTDLTKDEVEEPLKLTKEH
LHALSTLKQAILTAPALGIPNYNKDFHLYVHEAKGIASGVLAQYLGLTLRPIAYYSAILDPVAKGLVHCLCSIAAAALMV
KKANELVLGCKLHVYSAHQLEKLLKSQSRHAFTSARLSQYEIILLANDNLFLHRCAPLNPATLIPDLPLGEKPLHDCTQT
VETVHRTREDLKDTPLNDPDLQIYSDGSSYVFKGKRITGAAVVMGDRTLWHASLPSHVSAQGAELRALIEALVQSKGKRV
NIYTDSAYAFGILFATGQTWKNRGFVTTSGKRIAYENLINQLLEAVNLPKEVAVIHCKAHSSGKDEVSLGNHRADITARF
AARFGPIHVLNFSLVDKHDLKQAYCQEEIQSWQEHLGARLVRGIWLSQGGKPILPKRLYQHLCNVIHSRGHYGVQSMLDE
VRRFWEAPGISTTAIRVCQTCDICRKFNQGHFKCKALGGxPLAYMPFQCLQIDFINMPGDRGYKYVLVIVDRLTRWTEAY
PSKKNNTGMVVKTLLKEIVPRYGIPNTIDSDRGSHFTSSILQQVYKSLGIKGNFHNAYRPESSGQVERMNKELKTTIAKL
CAQTHLKWTEVLPLALFYLRTKPRGDLHISPYEMLYGQPVWIGRTAKPSYLSMLGGECQLHTYLTQIQNRLEELRRLGLL
VQRVPLDFSLHNIRPGDKVYVKNFAKDKPTEPRWIGPYDVALTTPTSIKVVGKDSWLHASHVKHHYAHDNTPKDNLMEAQ
ESIQTQMPQEQPLINKHRAHESNKIAQEEIEILNRDSETEIE
>ERV16_MD_env#LTR/ERV1 6119-7946 via tfasty with ERV27_MD_env, 4 frameshifts [Didelphinae]
NPHQPWKWSLHSWDTSTTIASTTTPDSPSFLFTPCQALTSINCDGPGIKPFVLFDYYLCPASAPGRSYCNSPNQFYCAYW
GCETLATEWQAPVPDSSLLLTWSPHGCNPRNMIRWSNGRGHIGQVEAVGNCQYLNITVILNPQDQGWLLGKTWGFRVYVS
GTDPGGLFLIKKEPLALPSYPVGPNPVLQPLAPAPSLPLAPAPSLPPPPAPSLPSALGPSVKPMSPLPLSYSPGLAYPTS
PPNFAPMDPLLPLLEAAYMTLNHSFPNITTDCWLCLSSHPPYYDAIALNATYNSSTEITPHSCDWGDGKAGLTLQSISGQ
GICIGNFTLTSCMPQCLPFQIHTDSPAKYLIPPEGTRWACSMTGLTPCVATSTLTNNKEDCILVMVLPRILYHSGDQFLT
YWEQHKHPRIRREPVLALTLASIFGLAGLGTGITSLVLHTTDLKTLHVAVNNDLRCIEKSLEALEKSLTSLSEVVLQNHR
GLDLLFLQEGGLCVALKEECCFYTDHTGIARESLAELKKSLDARQKVLTSRKPWYQQIFNGSPWLTTLISTLIGPFAILI
LLLAFGPCILNRLVQFVKDRINTVQLMVLRQQYLPLNDINTPTRTPLP
>ERV15_MD_pol#LTR/ERV1 2616-6241 via tfasty with MuLV_pol, 2 frameshifts.  [Didelphidae]
RGRVSGPLPESWVTAYIEGKPLPMLVDTGAEHSVLLSPLGKTSSKTSLVQGVTGSSRYPWTTAWTVNLGTRQVSHSFLVI
PESPAPLIGRDLLHKIGAHIHFSRGTVSLTDDSGAPLTVLTLALQDEHLLYSDPAPLDIPPPPCATWVDSIPKVWAELSG
VGLAINQPPIIIPLKSGATPIWVKQYPMSAEARDGIQPHIKRLLASGILMPCKSPWNTPLLPVRKPGTGDYRPVQDLREV
NKRIEDVHPTVPNPYTLLSNLHPSLTWYTTLDLKDAFFTLPLATVSQPIFAFEWFSPETHSTIQLTWTRLPQGLKLSPTI
FSNALAEDLKPFRQLHPTVTLLQYVDDLLIASPTEESCKEATRDLLLCLEAAGYRVSAKKAHIARREVTFLGYRLHDGLR
WLTPAMTQAILSIPTPSSPRQVREFLGSVGYCRLWVPNFAETAKPLYAAARETSNWVWTEDMEIAFQDLRKAMLQAPALA
LPDPEKPYQLFVDERQGVAKGVLTQKLGPWDRPVAYLSKRLDPVSAGWPSCLRIIAAVALLVKDADKLTHGQPLLIATSH
AIESVLRQPPVRWLSHARLTHYQSLLLNEARLSFRVVSTLNPATLLPTGDDNTETHSCQEILVESISARPDLKDVPLANP
DLLFFTDGSSFMSPQGRRAGAAVVDHTGQVIWDASLPEGTSAQKAELIALAAALRAAKDKRVTIYTDSRYAFATLHVHAP
IYRERGFVTSAGKSVAHLEDIQDLLAAVWEPRAVAVVHTPGHQSGSSLPAMGNRWADEAAKAAATRDRAHTLVLPIQANP
EPPGPPSLIPNPPPDPPQYSDSDHQWIKGKEGRPVGSFFQDPAGNLLLPRIAGQLLTTHLHHLTHLGANKLHELLRKGRI
RFQGSRSFLTELVDKCTACQLTRPANPNSHPGTRLRGTRPCEHWELDFTEVRPGKFGFRYLLVLVDTFTGWPEAFATKTE
TAHAVAKILLEEIIPRFGVPSSLGSDNGPAFVAKTLQALAGGLGVKWKLHCEYNPQSSGQVERLNRTLKEILTKLSLETG
RDWVTLLPLALFKARNTPGPLSLTPYEILYGSIPPPVLSAFPNATPSSPSLRDFVLSLSQIQSDLWPRLQARFQPPPHDP
HPFKPGDWVWVKRHRKANLQPRWKGPYVTLFVTPSALKVDGIGPWIHHSHVRAADPPKATADPQEATEVWTATSHPDTPL
KLKLHRTA
>ERV1_EC_pol#LTR/ERV1 2399-5986 [Equus caballus]
RGPEASPAPITIEQTEPRVTLDVEGKQINFLIDTGATYSVLVCHSGPTRKSHQKIVGIEGDSKFSYQTSPLSCQYRTQVF
SHTFLVLPTCPTPLLGRDLMKKLGSQFILTREEDGLFVALFPSSVVSQIPSNIPPHIWEAVDPQVWDSSLPGRDITAQPV
SITLWDSSLVPHKRQYPLKPEALEGLQPLILKFLSHGLLKRCQSPYNTPILPVKKPNGDYRLVQDLRIINEATVPIHPMV
PNPYTILSQIPENSNWFTVLDLKDAFFCIPLDETSQPLFALEWKFPNEALPIQLTWTVLPQGFRDSPHLFGSALGKDLRD
VQLPVGGLIQYVDDILICSPTKENSDHNTVLVLNFLAQRGYRVSPQKAQISQQQVSYLGYDLTPGHRALSINRKKAILEL
GPPKTKRQLRTFLGMAGFCRLWLPQFGVIEKPLYEATRGPDTEPLEWTQKEDKAFRSIQQQLSSAPALALPNVNKPFTLY
VTEKQGQALGTLTQRLDPETQIVGYFSKTLDSVALGWPACLRAVAATALLVEEASKLTMGQPLTVMTPHQVQAVLQTKGH
QWMTGGRLTRYQAILLDTPDIILKVCQTINPAELMPGPDYPVQDLEHTCSEVIEQAYSSRPDLLDSPKDNAEDTWFIDGS
SFIEQGIRKAGYAIVNALHVIEAQALPANTSAQKAELIALTRALHLAKDMVINIYTDSKYAFLVLHAHGIIWKERGLLNT
KNSPIKHGAEILALLNSVLLPKQVAVVHCQGHQKDLSLESKGNNFADREAKREAKQSTLLSLLPTPPALGLISPTYTTQE
ITLAQEKGYTQETKQSWLINDQGKIFIPKSLQWKLVNGIHQATHFGKESLTQLLSKSFDGHTSHATIRQVCRSCDTCAQV
NPEGAARPSPLLQSIQRQGTYPGEDWQLDFTQMPPCHGYKYLLVFVDTFAGWIEAFPCRSERAIEVTKALLREIIPCFGL
PKTLQSNNGPSFIAQITQQVSSALQIKYYLHSAWHPQSSGKVEKANHTLKRHLSKLSLETQETWITLLPIGLLRMRTAPK
SSLGLSPYEILYGRPFLSTDIVFDSDYHQLCQYSIEAGLIRKELNDYVNNHLPKPEPLSADIPCQVNPGDMVYLKDWKTH
SDGLSPKWKGPYQVILSTPTAVKLKDHTSWTHISRVKLMTSFQDKADPDPAVQLDYSCEQTGDLKLLFRTKGTLS
>ERV1-6_AMi-I_2p#LTR/ERV1 1778..5476[Crocodylidae]
DSPGPLQGDAPVSTSPVSLAPLLPLDGDCSLQLSVHGATASFLVDTRATHSMLSFNRSDVPLSSEAVTAVGIGSQPIVHP
VSKNLTVQVGPLTTRHSFLVSPCSSMNLLGRDLLCKLKATISCSPDGVYLHLPADNSPTLMAALLAEPDPGSSSLQQELL
DQVPQELWTQANTDVGLLASANPVHLKVLPGKPLPRVTQYPLPREAEEGIGQIIKDLQKQGVLVPCTSPCNTPILPVKKA
GKFDNEGRQVYRFVQDLRAVNAVIEHVFPVVPNPATILSSIPPEATHFSVIDLSNAFFSIPVHADSQYLLAFTFQGQQWT
WTRLPQGLTVSPTLFSQLLKADLDTIELPGKSVLVQYVDDLLVSSPFESVCIQDTLHLLKELARKGHCVSRNKLQFCQTR
VTYLGHYISQGERALTTDRVQTVLDIPKPVTKRQMRGFLGSAGYCRQWIPNFAELSKPLSAMVTNSAPEPLSWDNATSQA
FDSLKQALSQAPALGLPDYQKPFRLFCHESNGCAAGVLTQPQGGGHRPVAYYSAVLDPVAAGYPPCLRAVAATALLVEKS
ADIILGHPLTVAVPHSVLALLQRGKTQHITSARLTRYEKILIAADNITLVRCAPLNPASLLPLSSDGEPHSLPHDCQTAV
DIVLTPRPDLFDSPLPNPDLVLFVDGSSFCLLDGSRVTGYAVCSPHSVVESGHLELSGAQPAELYALTRACHLASGISAN
IYTDSRYAFGVCHNFGMIWAQRGFLTSSGMPVAHGPLISALLDALLLPSSIAIIWCKAHTSSSDSVSLGNAAADAAACHA
AQHGPWASWAPQAVLSLEPHRSFPLPALQAAASDAERDLWLSAGCSSDSSRCWRHPDGRPVAPKSLLPLLAGVAHEFAHT
AKGGIMKNILRYWFAPGISTEAQRVVAQCPTCQSHNPGQSGKVSLRHGTVGTGPFSHLQIDFIDMPPSGGFKHALVMICM
FSGWPEIFPCRQADATTVAKKLLNEVIPRFGVPLSIESDQGTHFTGRVMQDVCKTLHIPQRFHMPYHPQSSGKVERMNGQ
IKNRLAKVCQETGLTWPQALPLVALEIRTIPVRKHSLSPFEILMGRPYHPAVMPAATDISGVHSSLVAYCKGLTNAFSTV
HSRVKDTQPAALMGPAHDFQPGDWIYAKRHTRKTCLEPRWKGPYQILLVTDTAVRVAEIPSWVHASHCKKAHLPTRESIL
NPQAPEFQPTDSWECQRTGDTKVKIQRIKARNS
>ERV1-5_XT_gag#LTR/ERV1 562-1905  [Xenopus (silurana) tropicalis]
MNILKMVYVFNTMIYRKESTQNVCMATKTEVSNNETEGSSRDSERDNEVNESDCSNCDILMQHIQELEDQIDVRTEMVCQ
LRKNFHTKEICTGKKDTSEIPHIEGEEEEEEEEPVRGVEDESGRQKRKKELLTKAARLKIKIHDQLMKIVKDLPPYNISK
DAFFNNDVFQAHVSRYDLSEDQINKIFKFWLPTHMSRRLTPPVSAPKLDRYGDITHGNNRDRLKQLIQITTGESVPTNEV
LDNLKTSINEDPFAFLVIFEPAYRLVMGIADDQVPPQMVQAFVKKFKYLDAGAMIFACTLNTLEEAAAYIDKFRRQLKAN
APKAKISEIFRPGNKPTYNRTTQDYRNGKGEYRSFPGIQNLKCYRCHKKGHLKRNCRTPEKDIQVDHKESGRENGFVRQA
SAPPAETQIPKQESPYAPLLRQIRELVSDSGYTSGSTTSETKKVSNDQ
>ERV1-9_Crp-I_1p#LTR/ERV1 1..912[Crocodylidae]
MTIISPQGQLAVNFTHPKSEPIDFTLNATSCPEECPLSSCGTLVYDFSLSSSGLWEASTSKDSPTLATEIIIHDXAESHE
IGPFIVKQXISKPLLTNMTQSLWNVTINLLSAGWQAWTQQVTYEPSNSSESSGPCQRSLDTVLGAIGTGTGVLNTMNTEV
LRNRLATVGNLLHHLDGPTRDNFETXIQLSVSIASLMQWMTQVASQDSHTLTEAIIALGQNTSLALMCTQAQVWYLDVIK
GIILQGLKGHIPLELQNLLRKETRQSPQLTPYNRLIQFGFDPNLWSINLIIMGVVSGKINQVFPIITLGSQINDTFMIPQ
TGKHWALKQPNGQFKAITVNNCEDVGSSFLCEELMLQSQTLCFDPDFSICPYVMFKDPSAQSLLVSIGFGCVCLRTLCQS
ITVNEFYNITGLQHNICLCNVRSITGCDIQYRKRTMLHQSITPQYSLLNLNLPQSTVYPPQALRHATTHPELQQALQALQ
SQANKTYTIIQTNNHQVTQVLTKIKEVTQYSPWETLLGWSPTATGILNLMMHPIVILFTLMIILTFLTIFLYCKLIATLC
TVHAKIDEAKALGRIL
>ERV1_EC_gag#LTR/ERV1 852-2395 via tfasty with CarERV2_gag, 2 frameshifts. [Equus caballus]
MGVSNSIPKDSPLGCLLNNWAKFDLQDLKKKRLIFYCNTVWPQYNLNEEKWPTNGTLSFNAILQLDLFCRRLGKWSEIPY
IQAFMALYQDPELRAVCRMCLASPTKVEKPTPDILDDDCLVRPIPKAPAAPAELTSPEDSKTKIPPPYDREPKIEASIPI
SPTGRTRSGTSYNTGHFPLREVANREMGTIRVHVPFSMSDMAQLKTQLGRYSENPSQFIDGFQQLVMMFELTWQDIYIIL
THCCATDERNRVWAGAREFADELHTRDRHKYPVGGTAVPDTDPKWDYRDEEDRGQRNHMVTCLIEGMKKGFTKPVNFDKL
QEITQGTDENPALFQGRLAEAIRKYTNLDPTSPEEITILNMHFISQSAPDIRRKLTKQALGLQTPVQRLLEVATQVFNDR
DLTLKQDKDRRAKLQGKAQAHILAAAIVDMPQKQANQGPTSQTTNAGGPGKSPCYRCCQLGHWSKRYPRKDPPPGPCPLC
KREGHWKRDCPRLQSEEGPRTHFPARRCDPEDSA
>ERV1-10_AMi_gag#LTR/ERV1 388..1803[Crocodylidae]
MGSNQSRIPXCSPLGCILKNWSKFGGDPMTKKRMIRYCNKWWPQYKLEDGVIWPENGSLDYNTVLQLQLFCRRQGKWDEM
LYVDAYMSLYGDRTTQRSCGISGGSGVMALRKIEAAGPEEPEEDTQLLVAPTAPPLPPVPHASPQGASTAPAIASHGLST
SSPSSSSTTTPSSPGVPSPGSADAGRSDLAVGGAMGSETFSPIADRLRSAKPVIQAPLRQAVGPEGRPVFVHVPFSIADL
INWKQSTGPYRQNPEAMVQLFTTIFLTHQPNWQDIQALLAALLTPEEKRLVLEKARAVAQQRHPNGVVDELCPKTNPGWD
PNAWGELRSLELYQELVLAALREAIPKQKNLSKLYEVRQGPEEDPSSFYGRLCEAAKQWTDLDPELPENAKMFNTLFIGQ
SAPDIQKKLQKAEGAAGMGISQIIEITYRVYSNRDQVKEKKEDKRMKAQASLLAAAIVDQRGRGRGRGNRGM
>Copia2_VC_pol#LTR/DIRS 1829-4231 [Volvox carteri]
CYCLPVRARGRGPLESGPCGKRPAVRQSVRQSISPSSQLKGQRLLGQPRGPPTAAPEDLPAPKRPAPGPIPARRPKLDPA
PVPASLATHRKQPARPAVAPEGVKVEAPGEFWEDKGEFSCPTFDNASGSRSTPVAGPPSVPPQMRGRLSGKKGAWKAWVV
NALVISWITSGFPLRWVSSPPPQHSGRNHASATANTAFVDKAVADLVASGTARVWLSQPRVVCPLGVVQQATKLRLIWDG
RPVNNYLHVPSFCYEDLKAVPGWLLPGDYLFTLDLKSGYHHLDIDPRFWEYLGFCWRGVFYVFTQLPFGLASACWAFTKL
MREVMHPWRKRGWRCSGYIDDQVHADQNADNLVRRRAEVVAQLETLGFLVNKEKSMLGAVQHRIRYLGMLIDTKDSVFIV
PGNKRDRLLSQINSVLTARRSTARLLASIKGQLLAMSWALGPWARLRTRALGQLIETRQTWETHLSLSDDAREELSFWES
SFDRFNGRRHLWVPSVVHSLIFCDAAGKSSESLGGWGAWTILNGRLAPARGEWTPDVSAMGSTPQELQAILNVIQSFDSP
AGLSGQSVKVITNNLNAANVVNKGSAKADNSHKVACELLSFCFEQDIRLQAEWRPRGQNQLANALSKLQEPDDWMLKPSI
FRRLHDTWGPFNIDLFTSHAAFQLPVYYSRYFTSTTSGVDAFRFSWGRRCWANPPFHLLLRVLQHAEACQSRLCLVAPFW
PTRDWWPFITADGV
>STLV-3_rex#LTR/Delta  gi|18071207|ref|NP_542259.1| rex protein [Primate T-lymphotropic virus 3]
MPKTRKQRSRRPRNQRPSTPWPISQVSDRAFSTGTLSTFSATVYRPIGAPFLGGFVPLGYTAMPCWPRAPNIRLPGTPSM
DALSAQLYNTLSLGSPPSPPKELPAPSRFSPPQLLLRPPRFLHPSSTPLKNTPPSETIASSSPWESSCQPCPSPTLGSGP
KTSTPYGAAPSCVSTSISSPPP
>DIRS1_FR_pol#LTR/DIRS 1865-4083 via tfasty with TnDirs1_pol, 3 frameshifts and 1 stopcodon. [Takifugu]
FRIDSGGAYAAGRHRCPSSVAAEKAALSFCSDNEPREALRFPHTVSQAQRFRSHKCPNKGAHCSLCECSKWQLSSIKVQL
FSQKNMNHEHRGGLVMPLPTGTPGGDSPSPTVLQVSRLAVHLPRWRACAVSPWVERTVATGYRLQFKVRPPRFHSVVYTV
VGNEAATVLREEINNLLNKGAIxVVPVSDANRGWYSRYFVVPKKGGGLRPILDLRVLNRFLXTYRFKMLTLRQLLSAISP
GDWFTTIDLTDAYFHIAIHPDHRQFLRFAFEGTAYEYLVLPFGLSLAPRTFTKCVEAALAPLRQTGVRILAYLDDWALVA
SSEERAAAQLSQTLTHIRALGFSVNLQKSSMIPSQQFSFLGLEICSLSGRARLSEHRVAAFHRCLSQFQLGRRLRFRTVL
QLTGMMASMIAVVPLGLLKMRAFQRWTLSHRLCVPRHLQMKLAITPSCMTTLLPWREPGLLRLGSPXGRVSFRKVVSTDA
SLTGWGALCDGAAVRGLWTAVQCRLHINYLELLATFLALKHFHPVLTGYHVLIRTDNTTVVSYINRQGGTRSLPLLNLSH
SLLLWCNARFLSLRATHVPGHLNLGPDLLSRGSPLVREWRLHPSVVAQIWSRFGRAEVDLFASRTNTHCPLFFSMTDRSA
PLGMDALAHLWPHTLLYAFPPVEMILPVLERVRQQGLSLILVAPCWPAKSWYAEIISLLASRPWQLPLRRDLLSQARGXI
LHPRPELWRLHAYLLKGPTC
>DIRS-1_BM_gag#LTR/DIRS 330-1526 [Bombyx mori]
MSDEVIAPNLNKTLSEDSSSTSPDISSDSSENKDEEPPRKRRKRDWSRDLNKRFDLLSQQLVSHVNNILIPNYAITGRTP
VVPLSHIQIPTSCNNNVSDLVSSSNRRSTTDEQFLRRPLTEAGSFVDLSVSIKEPTVPKAIQTRVDKIKDMQRFDSPAWN
AVRYSDVQKKYAAFPAFTELKVNEEFRCLENSFSPLRWFQMERSFAALSQALLAQNECVNTALQNLVDWSNSADVQLNAF
SIYEKLKQLFGNDSGYKTVSHDILQIICGKRAEVLEIRRRDLLKKLKDKYIREDIERIPPSCDYMFNPGLLSAYIQKIGG
IDKLQKQAPSATRSRPKSPEPSTSTTTSKPFRSRPNFNKTKEAENRFSERGYPNNSSAKRMGGGGRKYKTGRKSGNKNK
>DIRS-1_ACas_pol#LTR/DIRS 658-2781 via tfasty with DIRS-8_NV_pol, 6 stopcodons. [Acanthamoeba castellanii]
MQEAFKLFHTIIQASAHMAQRFLAASNNLEDIVSITLIGMREQLHMHNKAWMTKVLPTKALLAFRALEGSLILSHDKEQF
FIALKFATLKQQATGTKKPNKWSNHLGSSNNNYNSNSLPSSKGKKPYFKPLNLSTSSPGAGSGATQDYDLSDQCLSKKNS
KSQLIVNMQLLNCFMRPPKFKFQSLxELADLLHPGDFLITLDFQDSFHHVEVHPRHQHLLAFHWRGTHYTFQACPFSLNT
SPWIFTRFVHATTRALAVRGIQCMVYMDNMIIMAPDKARAIEHxVMALKVITGLGWHINHEKSLLVPSQLKEFLGLTIDM
TGEPCFWVPMGKAHALKHDIERLLCAHDQDGQVLVRWAVVVAGHCCSLMxAVLPAHLLLCNLYCDVVxRRSWNSHIHLSD
VAQNDLWEWMAGMATWDGRLALMRPFDMVLNTDASLTGWGGVLRDLSATSAGWWHGRCWHINELELKAVLQALRAFQPML
LNCSVLLHCDNVTTVVYINRLGGRSAVLNKTTCKILKWCEQHHTQLSAQHLLGLNNGRANRLSRLYLQHEWWLANHIFHL
LNRCWGPHTIDCTATALNACLPRFNSHFHKPGLEAVNCLMQDWWxDNNWVVPPIALIPKIMALICHQxAQATIIVPVWRG
QQWFQELLDLCSAPPVPIPNEPASFPWEGHNAPKPLHNPRWNWVACRISGSTGPLAGPPMHSPPSTTR
>BLV_gag#LTR/Delta gi|9626227|ref|NP_056896.1| Pr66 [Bovine leukemia virus]
MGNSPSYNPPAGISPSDWLNLRQSAQRLNPRPSPSDFTDLKNYIHWFHKTQKKPWTFTSGGPASCPPGKFGRVPLVLATL
NEVLSNDEGAPGASAPEEQPPPYDPPAILPIISEGNRNRHRAWALRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTP
ADLEQLCQYIASPVDQTAHMTSLTAAIAAAEAANTLQGFNPQNGTLTQQSAQPNAGDLRSQYQNLWLQAWKNLPTRPSVQ
PWSTIVQGPAESYVEFVNRLQISLADNLPDGVPKEPIIDSLSYANANKECQQILQGRGLVAAPVGQKLQACAHWAPKVKQ
PAILVHTPGPKMPGPRQPAPKRPPPGPCYRCLKEGHWARDCPTKTTGPPPGPCPICKRSFPLETRLSNPQIKKLIEGGLS
APQTVTPITDPLSEAELECLLSIPLARSRPSVAVYLSGPWLQPSQNQALMLVDTGAENTVLPQNWLVRDYPRIPAAVLGA
GGVSRNRYNWLQGPLTLALKPEGPFITIPKILVDTFDKWQILGRDVLSRLQASISIPEEVRPPMVGVLDAPPSHIGLEHL
PVPPEVPQFPLN
>TSE5#LTR/Copia 5-4534 [Kazachstania exigua]
MSPVAQRENPLSIKLESSKDFKKWLNRLRNHMFHVSNDLAAYAETGNLSQASNEYNLSEQVRSEAINILSFALIELLKIS
TQGRPHDAIFKETDENPYVTGKEILDMIIKKYDISNFRQDVQIWLPIHSGMVAEHVVQMDNSSDRNLTFCATDTSTSGIS
KDEWILDSGCTVHVSHNRELFTSFKSSTNSTLRGVGGETHIYGYGDIKIGNVTLKDVAYAPDLPFNLLSVQKAITTSDYA
LLFDVDHHVKILDQKGYIRALASLKNNLYVVHFGTDTKHIAMGAYDVEITSSLTGSHDPLLASEKPVTPETSILHARLGH
PGINSYNQLASIVHAPKIKPASVTVCPTCSLSKGTINKGVISPAEYTSPLQLLQVDLCGPFRYKNYKSEKYFMTIRDAYS
RYYSVVHLVKKSDAAQELIDWIQEVENYFFSRGGYKVGAIRTDNGGEFMGQSLHEFFKKKGIQHQLTVPHSSFQNGAVER
AHRSIEEKTRCLLVGGRVPPSLWTEAVNTAVYLLNRLPITNKKGSIPFCLWTGSEPSALKLDNLRVFGCAAYATLDSSLR
DGKFAPTSISGVFVGYDSNRKAYRIFHPASKKIFASCQVKFDEFVFPLEHTKDTVSTHSFATSTIGGAPTYPSSNSGYRY
IESENEVSDSSHGDQSSSVNSSFSESNNIAPDDADYEEEPDLSMRSSSHSSDAATSNLQVVPITAAPPSSPDSTELAKTS
NAAVRSSDSYSSFPSSEPYYSAPPSNQSTASISESHLVSHSDIPSCESENHDMVLADPLVDSVTQQLQHSTNQLKSTHDD
LMSLQKMNSELTAQNSRLRNHAHHLAQLVPSPTARNKRTHASTDLLPPIVPNEILVDSRPTKQSSTHVLGTDKIARLPTA
MVTPDDHTYQTIPIQSTDVAPINHVPVKSAWADRIRHYESKQNWSPTGHSLTNLPIAAVDQLYSTDRAIVVRNDQNQLTQ
HVLSPDNASLPSSDIDIEEVETHVGMTAVISGHSTITPSLIAPMTMQQALRGKNAKAWRSAAEHELAAFKNHHTYELIPP
PDDVRVLGSRWVLTVKGTHTAKARLVAQGHRQIQGLDYTETFAPVVRYDSVRIFLALAACHRLQVHQMDVDTAFLNSPMD
EPVYVRQPPAFLDAQHPDWVWKLSGAMYGLKQAPMLWNKHMNGTLCKKGFEQHAGEHGLYFKNTASGIVIVALYVDDLLI
AGPNDATISSVKHDLSTVYSMKDLGPVSKFLGLNVHQTPAHISLSLEDYIVKAANASSICLSKPRYIPISPTTDLFDTNS
SLLSNITPYQSIVGQLLFAANTGRPDIAHAVSLLSRFLKAPTELHLETAQRVLQYLYTTRHASLMYQMGAPVQMNIYSDA
SYGAKEDIPYATRGYITQLAGGTITWCSKKIKSTITLSSTEAEYIAASEAVAEMQWLINMMNHMGIKVKTPNLWVDNIPA
IHIAENPVHHNRMKHVAIKVHHVRKAIADGQINIGHINTKEQLADITTKTLSKALFIHLRDKIIFKASI
>TSE1_pol#LTR/Copia 1017-4811  [Kazachstania exigua]
LTNQLKKLLLKVATRNCSIFKTLTHLLKILGNSENNLDNLLIVDSGAEISVIRDISFLTGINHNPTDRLLGAGDQELKVN
AAGTLRLNFGKTVIKIKALVSPDSTCNLISLHDLEKAGLIIDLQNRIVLNKNHKKIGNIIDCGRYICLPLKLITPNKGIH
KVNNISKKLQMAFLHRLFGHINIKTIKESISNKLIKNISLNDVDWSHIDKFQCTDCMKGKATKHKHIVGSRLKYQNNYGP
FQYIHSDLFGPVTGVSATSPSYFISFTDECTRFRWVYPLRTKSAESIYNIFDHLVRQIDTQFNTKILSFHMDRGSEYTNT
EMQMFFQKHGIIPIYSSTTDSSSNGVAERSNLTFLNDCRTLLVSSHLPNSLWFNAVEFATLMRNAFINSTNKMSPRGKAG
LAGLDASTILPFGQEVVVHNHKVKNKLHPRGITGYALSPSKESHGYLIYLPSTKQIIDTSNYVLVKNLANNTTADNSIFD
DLITIYEQDIDTSILDGTPIDSTYNNNNAALGGTGTGNGLEGFDDYNNDALGGTGNGNGNGLEGIDDYIKTALGGSGPGN
GNGLEVIDDNNELLHFDDENSPLNESNDNIPLDALEDISNGDNSQEGTAIDEFTNFTDDSQEADLHPLDSGETNHNSTPI
DNTAANDTTIVTDEQSQILPSSGGRKKIESMLKKNGNSLSTFQNPRKRVRSNITDKSETRKDLQEEKDYKETGIRPKKLR
RRVNYIKAIKHVMQTKQLNPSLNYFDAIVHNKSTTESKEYKAAYDKEINQLMKMNTWDNNQLYDAKDIPSKKIINSMFIF
TTKRDGTRKCRFVARGDQQHPSTYDENAIANTVHHYALMTSLSLALDSKKYIVQLDISSAYLYADLSEELYIRTPPHMSK
RGKVMRLNKSLYGLKQSGANWYNTIKEYLIKKCKLQEVKGWSCVFRNKDLTVCLFVDDMVVTSSNRELANKFIDTLKKKF
ETKVVNTGEIDNQGYAYYDILGLEIEYKFGSKMKIGMEKSLQSKLTTLDVNLNHSGKMLKAPAPPGTVITKCEPETTEDE
YKKDVKWLQRIIGLASYVAYKYRFDLLFYVNTLAQHTLFPSKQVKRLATLMVQYLWDTKHKKLIWYAKDTNQNDLHAITD
AAFANLDGYGSQVGYFIRLNNKIIGGSSSRAKLTCTSSTEAEIYAVSRAIPMLDSLKLLIPKISPTKLNAEIKSDSMSTI
NIATSDDDKKFRNRFFGTKAMRIRDEVQQLGLNIKYINTEENTADVLTKPLSYKRFLKLTADWIS
>TY2_gag#LTR/Copia 227-1276  [Saccharomyces cerevisiae]
MMTPNKAMASNWAHYQQPSMMTCSHYQTSPAYYQPDPHYPLPQYIPPLSTSSPDPIDLKNQHSEIPQAKTKVGNNVLPPH
TLTSEENFSTWVKFYIRFLKNSNLGDIIPNDQGEIKRQMTYEEHAYIYNTFQAFAPFHLLPTWVKQILEINYADILTVLC
KSVSKMQTNNQELKDWIALANLEYDGSTSADTFEITVSTIIQRLKENNINVSDRLACQLILKGLSGDFKYLRNQYRTKTN
MKLSQLFAEIQLIYDENKIMNLNKPSQYKQHSEYKNVSRTSPNTTNTKVTTRNYHRTNSSKPRAAKAHNIATSSKFSRVN
NDHINESTVSSQYLSDDNELSLRPATERI
>BLV_env#LTR/Delta gi|279730|pir||VCLJGA env polyprotein precursor - [Bovine leukemia virus]
MPKERRSRRRPEPIIRWVSLTLTLLALCQPIQTWRCSLSLGNQQWMTAYNQEAKFSISIDQILEAHNQSPFCAKSPRYTL
DSVNGYPKIYWPPPQGRRRFGARAMVTYDCEPRCPYVGADRFDCPHWDNASQADQGSFYVNHQILFLHLKQCHGIFTLTW
EIWGYDPLITFSLHKIPDPPQPDFPQLNSDWVPSVRSWALLLNQTARAFPDCAICWEPSPPWAPEILVYNKTISSSGPGL
ALPDAQIFWVNTSSFNTTQGWHHPSQRLLFNVSQGNALLLPPISLVNLSTASSAPPTRVRRSPVAALTLGLALSVGLTGI
KVAVSALSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWLYIRLGFQSLCPTINEPCCFLRIQNDS
IIRLGDLQPLSQRVSTDWQWPWNWDLGLTAWVRETIHSVLSLFLLALLLLFLAPCLIKCLTSRLSKLLRQAPHFPEISFP
PKPDSDYQALLPSAPEIYSHLSPTKPDYINLRPCP
>Zebedee#LTR/Copia 831-3202 Fragment, via tfasty with Copia15-NVi, 4 frameshifts and 4 stopcodons. Zebedee is likely non-autonomous, missing over 400 N-terminal AA and with an insertion at 530-830 ([Aedes aegypti]
MATAACGTKISKLTVDQGREYFSTSQKNYYKAKGIQVEPTIAYSPQQNEVAERFNRTLIEKVRTMQIESHAPKSFWCEAV
LSAVFLINRSPTSAVLRNVTPAELWYGRKPSLEKARVFGCQVYAWIPNQRRKKSDTKSRQLIMVGYAPNGYRLWDKDERR
IVIARDVKFNENYFPWANNARDRAEERLVVPLVYEQEGEEHAKEAIDEDAIQPDDAAVGPFDPSDHEGELLTEDDTDDEA
ATELANPALPSQSDLDMSSGPRGEQSERRRKRERRFPGKFLDYLTGFRASAVGPPSPSDVPETYDEIRTREESCPLEPGG
AGTSSVQxRPNDVWKSGGRAPAGVKLLKTKWIFRLKENEAGRSVRHKARLVVKGFLQRPGIDFEDTFAPVAKLSTVRVVL
AVAVHHGFKVHQIDVSTAFLHGMLKEDLFMEEPEDVKAKPGSVCKLQRSLYGLKQAPRCWNERFNSALLKLGFSRSHRAY
CLYVCNTEGDEVFLVLYVDDLLIAGRNIRTIQKLKRRLSDEFxMTDCGDDGFSLGMRLAYNPEHGDLKLTQETAATKILE
KFAMTECYPAKNPMEKGLQPDVSNAVSRPDLCYPVSYLGRFQQSSTNNHWQALKRVVRYLxGTATLGLLYKRNENSRPLV
GYVDADWASDAEDRNRxQVSCSKSTASTVSWASRKQPTVSISSSEAEYVALSAAVSEAIWLSGILEDLNCKKLTDPVSIY
EDNRGCIGLPKNAESKRIKHVNIKHHFIKDHVAAGTIKIEPISTPEQQADIFTKALDVTRFQSLRSKIGVTD
>DIRS-1_NV_pol#LTR/DIRS 1612-3668 via tfasty with SpDirs1_pol, 3 frameshifts and 2 stopcodons. [Nematostella vectensis]
MTETSLDTTKHEVRKCSLASNDKIGGRLKHFSSEWAEITNDKYILDSVQHYKIEFIAHEPEQHFVPKEINFTANEESFVE
EEIYKLLSKGVLIEPITAQExDEYISNIFIRPKKDNSYRLILNLKNLNKYVQYHHFKMDTLHVIRLMKKDCFMASMDLRD
AYYSIPIDIEHQKFLRFSxNGKLLQFTCLPNGLSCGPRLFTKVLQPVYAKLRQQGHLNVGYIDDSYLQGDTIEECNNNIA
DFCALFTKLGFIIYPTKSVLFPTVNMTVSLTPEKMSHIKDKCASLVRKGETIIHDLAQVIGLLVSAFPGVLHGPLFYRHL
EHDKTIALRINKGNYSAKMKLSEESVSELQWWVNNIDKVNYPICTPNSEIDIALHTDVSKMGWGAVRGSEKTWGRWTKFE
SLSHINCLELMAMFYGLKARSVHIRVYSDNTTTLNYIASMGGSQSIECNSIATKIWLFCIEREIWLSAAYIPGKENVQAD
KESRVFSDNKEWMIAPQLFKQITDTWGEPTIDLFASRLNKQVTCYASWKPDPDATYVNAFSISWNDKFFYAFPPFSLIAR
CLQKIAMENSEGLLIVPMWPTQPWYSQLLHMLTDVPRMLPRKPDTLRMPAREDIEHPLIGKMTLMTCRVSGDPLRHREFL
NKLQRSYYNHGDREPKNSMHRTSNGGLSIVLQGKLIALIPLYLKH
>DIRS-8_NV_pol#LTR/DIRS 1224-3425 [Nematostella vectensis]
MAAGRHSVRPVQHQRSGSVQINQTNQGKGQRIYAQLNPVNTPTINSQGMFITPPQENLVIGGRTAHFYSNWLDVTNDPWV
LESISGHKLEFVQEPYQLTVPVMHLTPQQMEIIDSEVIALDKKGAIIRVLSHSYPFENQFVSPLFTVPKKGGGFRPVINL
KGLNHFLEYQHFKMEGVTMLKDLLRRGDLLTKIDLKDAYLTIPISKQDQKYLRFRWKNQLWQFLSLPFGLASAPRVFTKI
LKPVVAHLRKRGIRLIIYLDDILIMSASKELALEHSNTAASLLSNLGFVINREKSILSPTRELEFLGFLVNSETMSMSLP
RDKIRGIKRECQNMLENPRVSVRDLSRLLGKLSASIQAVFPAPLHYQFLQKAKHLALKKSLDYETMLTLDHAAQEELTWW
RDHLAAWNGKSLLKRQNDLVIETDASTSGWGASCNGVRTGGLWSNQERFHHINCLELIAGGFAIKSFCKDKTSVQIKLLM
DNTTAIAYINKMGGHSPVLASLVYDIWQWCLERQISISAQHIPGVHNVAADTESRVDRDSSDWKLDPEIFSLLNLLWGPL
QVDLFATRLTNQLPRFVSWRPDPEAEATDAFTLDWSQMRGYAFPPFNLVGRCLAQVLEQRVQCLCLLTPVWETQPWYPML
LELSMDFPRLLPVNPQLLYREGNPHPLPRLQLAGWLVSGNDMLRAGFQARLNSCSCPPGAAKPQNPMTQPGANGIAGVLN
NKLIPFLPLSKTL
>DIRS-7_NV_pol#LTR/DIRS 1331-3229 via tfasty with SpDirs1_pol, 1 stopcodon. [Nematostella vectensis]
LQGQSLNEVPMAHAGNLQHHIENWRKITSDPWVLETVSGYHLEFSESPLQNELPKPPPFGEDEEKLIDEEITKLKSKGAI
IKVSPCTGEFISNIFLVPKKTGDMRPVINLKPLNSFVQKIHFKMENINVALDAIAKGDFMVSVDLKDAYFSIPIYKPDRK
YLRFKWRNEIYEFSCLPFGYSLAPRVFTKVLKPVVSHLRLNGCRVVIFLDDILLIGSSLQECFSHLSMLRLLLHDLGFII
NEEKSQLTPVSQITYLGFDIDSELMKLSLPIKKVEKIVHACKKVLLKTFASVREVACIVGLLVSAFPAVKYIKLHYRSIE
RDKTQALASNHHFDQNIQIGSQAMSDINWVANNISKLNGSMFGYNPVDVYIECDASLFGWGAVCNGQSTNGRWSLPESSH
HINYLELLAAFYALQAFVENRNGIHVRLRLENSTAVAFINNMGGMKSPSLAALPAIIRGWCISRNIFVLSQHISGRCNCE
ADALSREFTSNLEWSLDQDVFRNLVSKTFMPELDLFASRSNAKxDRFVAWHPEPGAHAVDAFSISWSNFRCYAFPPFSLL
TRVLAKIRNDSALVLLVAPTWTTQPWYPLLLQLSIAQPILLPRMDHLLTLPHSQELHPLKDRLHLAGWMLSGD
>DIRS-9_NV_gag#LTR/DIRS 174-1310 [Nematostella vectensis]
MAKDPPADKNIRRQSRPEDEPDDLNLDSEHEEQSKMAAMPPEDEISPPSITPTDVKSLTEAIYCLTKRLNNDVQPSMKAK
EGKRSGDSRSEIPAKKAKSGKKLHEPSSSRSSSDESSSDEEDTRESLLKKCSAAPSDDEDDFVKZLAKEYESEDLIGDDL
QNKQLARLLEKMLRNRLPDKTLKEKLDKQDRPENCPAAKATRVNPGIWRKLREHTQKRDLQFYKLQHALVKGIMPLTRLT
DMCMSAKGSLDAASVQQIKQFGLEALSLITHANYELNMQRRLLMKPDIGREYAALCSPQVPFTDMLFGDDLQKHLKDIGD
VNKIGAKLQSKKGPQSFRSSQVNNHRRSSKNWNSQNYKSWKRREPTQKSSIQGKRPSQ
>DIRS_Nvi#LTR/DIRS 1501-2198 via tfasty with TcDirs1_gag, 1 frameshift. [Nasonia vitripennis]
LNLLGESIQELNTEPPIHAEVAKVWQQICHKGFAKRSKESLFQKYLIPENCVFLKSPKLNSEIKSGVGKSIQCRDQFQVV
TQNQLGSALSAIAKVLTKLMSDEKMTTDEAKKFIFESTSDAGKLLPDLHFQISMSRRALINPALKQVAVNVAEKSEINEY
LYGQNFSEKLKIAKEVEKVGSGLSKQDRFARKPDFFGSRSSYRNQTNSRGDLNYRGPLHRRNTTYTRPARGQK
>DIRS-9_NV_yr#LTR/DIRS 3214-4197 [Nematostella vectensis]
LSCIRSSLVAQGVQGEPLEIILKSWRSGTRKQYQTYVKTWVKYCLDNGVNQIQPSLQNVLNFLTSMSKTVGFSAVATARS
ALSSFILIDGLKVGEHPLVSRFMTGLFNEKPALPRYVSTWNPHTVLTYLKSLPSFGEMSLKQLTQKLVMLMALLSAQRTQ
TLQTLSIEDMTVTPGKYVFYVSSILKQTSAKGGKNRHLSPIVFTSFTPDKSLCVVEALDVYIQRTAPFRKQTKQLLICHT
APHGPASKDSVSRWIKQTMKAAGINTDIFKPHSTRSASTSTAKAANVPIQEIMXVAGWRSDSVFTQFYDRPVKTGSMFAN
AILNSCS
>DIRS-7_NV_gag#LTR/DIRS 243-1349 [Nematostella vectensis]
MASKDDKQNHIEPEITVISREPARETQSTKDKDEEALEFDVDELKDQLGISHMLETMKFLVEQVTAKQAATSNYNASEAN
IAGKTSDSDGSGFDPSASLLPAVGDYTPDKESSANSSLDSSAAAQFLPSFFEEKEGYGPKVIDVIAERVNDACSKKPLEE
KLKELQNKYKTPENCKFLCVPKVNVELWHDLERNTKSRDLGLQELQKNVVKAAQPIVMLFDSIAGRAVDPKDILPMLADS
ITLLGHAPYLCSLKRRELLKPDIAQAYQAVCSKSNPVTTFLFGDELPKHVKDIGEVNKIARRTLARVSSSRRGRSFDYKF
SNNNNNTGQSMRGKRSAFLGLRRFRDRRTKGSNCQYTQKNYQNSKDKA
>DIRS-1_RO_yr#LTR/DIRS 2844-4070 via tfasty with DIRS-7_NV_yr, 1 stopcodon. [Rhizopus oryzae]
MVANTILASHDTGDEEVEQTNILPIESKDNFSRMAVIRQAQNTTGVSEETMRFLEDAQRASTRKTYDNGWKIWVAxRQKK
NLDFTEYNINNILAFLTDNKQFSTQHLNTIRSAIASVFKHTHPDKEPIDYQSLIQDFFSSKRNQPVPVTADHKLKTWDVD
VVIQYIKANLGNNQATSLKSLQQKTIILLCIATMPRPRSDIGNIQYRDTRLEYDSQDTLAGARIYFRLPKETQLKTCTIG
IVQDQSICPVFTLHIFLERTLPLRINLPVEHKLFLAYIEDPKKTCSAKGTTVANWVKDIMKQAGIDTEEYGPHSVRSTAS
TKAVEKGHSIENVKQHANWSRNTQTFERFYYKPTTTLTLGSQITNSIFSTENLTTLEAGAEATEIVLGTTNNQNVAEAKA
SNVVNAHPTS
>DIRS-1_RO_gag#LTR/DIRS 166-1014 Unconfirmed (no matches). [Rhizopus oryzae]
MGDINDNEPERFLTAADALELFKRLQIEERIRKDEERYGSELPLEISEYLDSTPTYEHKEEFTRFKKQSARYRNDNWNKQ
HQINKEIIPELKKWKTDTHQVVTSIYKYSENTRIQARATTEIYEQLRYLQGKIQFENPEDKEIFDGIIDQAAKLAMFGFG
QAKFQDNDARDYATKALKLPASMQYKGKFPEEDRAENTFDQEFMTDLHQARFQQRLLYNNTNNNQQHGRPYGRGGYRGAN
RGYTKFISRPFGGNFHQRGNGRGNRFASPINNPNTSTDNNQQQ
>DIRS-3_DR_gag#LTR/DIRS 308-1780 [Danio rerio]
MEKTFRSCVPPCPRFLTEQDTHDLCVQCLGQEHAQSALEGGGCVHCDSLPGRVLRSRRALFDKEPAAGVPRGTGPARAEA
ERRLMSWGSQLDLAEGMETSSRASSPPSTVRSRSSQRELEARSSASSSRADGRLLRLPASEGVESMEGLRGQNDVPPLCP
EYDELAEVLANVTAKYNINWEVERQEVRQKAGLCDERILPSRDRPLRGGLPFNKDLQKEIIYTWKNPYTARVISQQGSIY
SAVAGLNEHGCRTMPKMEEHLARHLLPQASSAKTPALPSKPXKLTSMLVGKAYAAAGQSVGCLHTMSLLQAYQADLLKEA
LDNGGAGPDTVREXLRASDLSLRATKEVARSLGRSMAAMVVTERHLWLNQADIKEEDKRIFLDAPISPAGLFGDSVDRVA
KSFERAKKRSGSYGSFLRPKGHPSGAMQRDQPQPSTSSSARYRAEQKESVASRQPPKRKWGGKRSQEAKTVTYGGPRTIV
VKRSGPQKKS
>DIRS-3_SP_pol#LTR/DIRS 1681-3659 via tfasty with SpDirs1_pol, 1 frameshift. [Strongylocentrotus purpuratus]
EVVEGNSPSGSSTQEVSVCNEAVSDMVGGRLKPFYENWCKITSDPFLLQAIQGYKLEFDPDKSPPPHTNKPLHTYKRNAM
EMAKIHEELNTLENKNVIERCSHVNGEFISHIFTRPKKNGGVRLILDLSKLNKYITYYHFKMDNIFTAVSLLSEGDFMAS
VDLRDAYYTVPIHTESRKYLRFVWQGQLWQFKTLPNGLSSAPRLFTKLLKPVFACLRQSKHKVVGYLDDTIIIGKTKSRT
LESVTATTMLLSRLGFIIHPIKSVLEPTQEIEFLGFRLNTIRMEITLPVNKGKDVREACIGLLEKKAPSIREVAKIIGKI
VATFPASQYGPLHYRALEKKKIAALRCNKGHFDRPMVLSPKSKDEINWWVSNVTSVKCPMHHGKFMMELRTDASGKGWGA
TDLKSQTGGRWNSQELARAHNNEINYLETLAAGLGLKAYCSNMRNTHVLIRLDNMTATAYLNNMGGIRSHSCNEIASQIW
EWCKDRNIWLTAAHLPGTLNVEADRMSRKFNDNIEWMLDRAMFKSIVGRYGLPEVDLFATRLNAQLPKYISWMPDPNAWA
VDAFTVDWGTLNFYAFPPFNIIPRCLQKIKVDNARGLLVVPNWPTQAWFPILEEMLLEEPMLLPWNISLLTQPVSGSPHP
LTNLDLLCCRLGVHTVTYMD
>DIRS-3_DR_pol#LTR/DIRS 1684-3940 via tfasty with TnDirs1_pol, 1 frameshift. [Danio rerio]
MGWETLSRGEDGDIRWSEDHRCETVWASEEVLALGLLRAAPNEEQRPPPRCPQGVYPPTLPPLVPQGVETPGDIHKRFIP
KVVTLVDSPPLLRVQEQLNQGPPVVSSPQCPELATQGNIETSLERLVPLQKFLAEWKRLPNVSQWVLLTIEKGYRIQFAS
RPSRFNGVLHTLVKPEQALVMEQEVESLLRKRAIEQIPPLDIESGFYSRYFIVPKKDGGLRPILDLRQLNRSVQTLKFKM
LTISTIVSQIQSEDWFVTIDLKDAYFHISILPSHRKFLRFAFGGKAYQYRVLPFGLALSPRTFTKVVDAALAPLRLQGIR
ILNYLDDWLILARSRELAVQHRGVVLAHIEKLGLRLNQKKSVLVPAQTTTFLGVLWDSTTMFACLSPTRIESIRAAAKRI
RLGQAITVKQFQKLLGLLAAASNIIPLGLLHMRPLQWWLKTRGFSPRGNPFRTIKASRRCLRALSIWKKPWFLSQGPTLG
VISQRLALTSDASRKGWGATLRGLPASGQWRDHHLHMHINCLEMLAVFQALRHFFPQVRGHHVLVKTDNTSVVSYINHQG
GLNSRPLCRLANQIHLWAQGRLLSLKAAYIPGPMNVGADLLSRQGLEPGGWRLHPKVVAAIWQRFGRADVDLFACQKTTH
CPLWFSLTNTSAPLGLDAMVQTWPRLRLYAFPPIALLPGVLERVRQGGYNLLLVAPYWPTRVWFSDLVSLLDGLPWEIPV
QRDLLSQAEGMIVHPRPDLWKLWVWPLRGPTL
>Copia-80_VV#LTR/Copia 781-5087 via tfasty with Copia-74_GM, 75.7% SW:3471, 7 frameshifts. [Vitis vinifera]
RLNGKNYLKWSQLVRTFLKGKGKLSHLLGIGPRRGDPRFDAWDEQDSMIMAWLWNSMTPEISDTVLFLTTAKDIWDAVHQ
TYSKALDAAQVYEIKVKTGAAKQGNKTVTEYANMLKNLWQELDHYRCIETKCPEDAAILKNYIEKDRVYDFLVGLNAEFD
QVRVQILSKELPTLNETISIIRAEESRRSVMLEPQNMEGSTMVANKGSDQKASTADNKRTDRSRASNRDNRDNLWCTYCQ
KPRHTREKCWKLHGKPTTSSKEWGYNGGQQRDNGQAHLSFVQPVEERSLEQGGFNQEEIEKLRALLGTLEKPSSTCSLAL
SGKFPISIGLKVSDETFANSWVIDSGATDHMTHSSHQFNNYNPCPSSRKIATADGSLTTVAGVGDVQISPTLTLRNVLHV
PKLSTNLVSIQKLTQDLGCNVTFYPTHCVFQDQDLGKMIGLAKEQNGTWLYYLETPSESSVSFLSEHHLFNKEKIWLHHR
RLGHPSFRTLKILFPSLFRKLDVESFHCDVCELAKHKRSTFPTNNKRSSEPFHLIHSDIWGPSPVPNISGARWFVSFIDD
CTRVSWIFLLKHKSDVSFVLPNFHNMIKNQFGVTIKRFRSDNARDYFNQVLTPYFQHEGIIHESSCVNTPQQNGVAERKN
GHLLDTTRAFLFQKHVPKSYWGEAVLTATHLINRLPSRVLGFKSPMEILSSFYPNMRTTNHLIPKIFGCVSFVHVHSPNK
GKLDPRAVKCIFVGYSSTQKGYKCYHPPSKFYFFVSADVTFNESESYFPAPYLQGENSIEEDKDQDSYFIDPFLIDPPKV
SGPVSDPVSVPSFSEPESSPIEPAPENRMTGKVYSRKKVAVPRLIQVQESEPASGNEVTVSHPPLQTESELQSEKPIDQN
LPIAIRKGTRECTKRPLYPLSHVVSFEKLSPSHKSFLTSLNNIHIPTTLSEALSNENWRQAMNAEMEALEKNKTWELVDL
PVGKRPVGCKWVYTVKYRADGTLERYKARLVAKGYTQTYGVDYLETFAPVAKMNTVRILLSLAANYNWDLQQFDVKNAFL
NGDLEEEIYMEVPPGFGSDLATKKVCKLKKALYGLKQSPRAWFGRFAKVVKNMGYRQSQGDHTLFIKHSDSGGVTTLLVY
VDDIIVTGNDERERQTLRQCLTKEFEIKELGRLKYFLGIEVAHSKQGIFISQQKYVTNLLKETGKLACKPASTPIDPNHK
LGEAEEDVAVDREMYQRLVGRLIYLSHTRPDIAYVVSVISQFMHSPKEVHLQAANRVLQYLKGSPGKGILFKRSSGLVLE
AYTDADYVGSVVDRRSTTGYCTFLGGNLVTWRSKKQSLVARSSAEAEFRAMAQGVCELLWLKIILEDLKIKWDGPMRLYC
DNKSAISIAHNPVQHDRTKHIEIDRHFIKEKLDSGLICTPYVSTDRQLADILTKGLSRQQFQASVSKLGMENIYSP
>Copia-17_BD#LTR/Copia 53-4567 via tfasty with Copia-3_BD, 2 frameshifts and 2 stopcodons. [Brachypodium distachyon]
MVPGASASGAAKESAATPATFYPQLDRNDYSMWAMKMEVALESQEIWEAVDPGGAAYAKGGAEYRKDRLALSAIYGAVPN
DVLQHLKGKKTAKEAWATVKTLHKGHERVQEANLQTLLKNYERLKMGDDESVDEFAARVSTLVNGIRDLGETLTEVSVVR
RFLRAASPRYMQIVISIEQCVDLKTLTMEDLVGRYKAHDERLRFSYGDGKEDEHLMLTRAQWQNLYAKRSGEASGSGATK
DQSKQKKKSPSNGDNNSAASKRKFDITKVKCHNCGLMGHFKSQCRKPLKETAYVAKEGDDDPALLMVEICELMDEDQQPQ
QPEEVEVVKLVERKVFLHDKKRNNASNVWYLDTGASNHMTGDKSQFSELNIAVIGTVQFGDGSTVAIEGQGTVLFETRYG
DHKVLTDVYYIPKLKSNIISLGQLEERGCKIVLEDGFLWGYDRQRKLLMQVKRAPNRLYILNLGRTEPVCLLVGLDDPAW
QWHARYGHLNFNALRQLGQKGMVQGMPCIEHVEQICDGCLIGKQRRAPFPREAKYASKVLELMHADLCGPILPATPAGNR
YFLLVVDDFSRYMWVVLLKSKDQAFRAFKLIKTTAEVEAEAKLKAFRTDRGGEFTSREFTSFCEEHGIRRYLTAPYTPQQ
NGVMERRNQTVVAMARSMLKSKGLPRKFSGEAVNTAVYLLNRAPTKSVPGMTPYEAWCGRKPSVDHLRTFGCVAHVKNIS
GHVGKMDDRSTPIIWIGYESSSAGHSKAYRVYDPLMKKVHVSRDVVFEEGKKWTWGKDSDEIQIGQGEIFSKLTLFSITY
PVPDVADHGGGRDVDHDHDGNCGGEPGTPPGRATGTRWASSGSTPSSEPTVSTAAESESAAAEEPGGMQEPAGNAGVASS
DRDASQEVQGSAAAESAQEESTGAAATEKNTDRSSAAAGKNPATTRRSPRLAAAAAAAAEKEVAPKPPRRTSGRRNTLER
FRALSELYPAKQVKPKPVKMKRTAKARCMLSTEEPENFEEASGEESWRAAMEEEIASIRDNDTWSLTDLPPGHKPVGLKW
VFKVKKDSNGVVVKHKARLVAKGYVQQQGIDFEEVFAPVARMESVRLLIALAAQESWKLHHMDVKSAFLNGVLEEEVYVQ
xPLGFIKKGEEHRVLKLNKALYGLRQAPRAWNIKLDNTLTSLRFEKCPLEHAMYKRGKGADRLLIGVYVDDHLITGADEK
EITKFKQQMKENFKMSDLGLLSYYLGIEVHQSNDGITLCQKAYARKILSSCGMEDCDPTHAPMEPRQKLSKTSDSEAVDA
TEYRSVVGSLRYLVNTRPDLAYSVGIVSRFMEAPTEEHLAAVKHILRYVKCTMNFGYTYVKKKKDEKARLLGYSDSDMAG
DVDDRMSTSGVAYFLGSSMISWLSQKQKVVALSSCEAEYIAAATAASQGAWLGRLLADLQGEEPEKFVLRVDNKSTISLC
KNPVHHDRSKHFDMRYHYIRECVEEGKIDVDYVSTDDQLADILTKSLGRIKFQEMRQRIGVKEVK
>Copia-16_SB#LTR/Copia 143-5050 [Sorghum bicolor]
MAAEGQSQHSGTSSARRRQEADLAAAEERRRAAAATAAAAARASRLAQAELAAARAEVEAAAAADAARAAAAEVEDLRSS
HSSSIAADDSADPDLELLERDAARRRAAQWAAVHAHERGRSPDRRGGAGGVPGGGAHGNGGGRVEEEHGLRRPRGSLSPD
RYRGGAGDAPGGGAHGNGGGRVEEEHGLRRPRGSLSPDRYRGYHGYHAVARDVGPGGGWPTLTKTNYVEWAAVMKVRLQV
LHMWEAVRYGDVDYDQDRRALNALIAAVPTEMQFSLTSKRTAKDAWDAIAAARIGSDRARKSTLQQLRKEWEDLAFKPGE
DVDDFALRLNTLLRKVVQFGDNTYSEERDVEKLFRCVPEKYKQMARSIESLLDLSTMSIEEAIGRLKVVDIDEPQPSSGP
KLLLTREQWAAGQGDKKKGEPSSAAASRKRGKRGKSRKGAQAGAQGRANGGARGGVQGAAAEKPKPAQDDCCRNCGLAGH
WAKDCRQPRRAQAHVAQAEEEQPALFMAHASAEPSPAAPAAAALLHLDEAKAHALLSSGSGGSDKIDGWCLDTGATHHMT
GRREFFSELDSNVRGSVKFGDASAVEIKGAGSVIFVAKNGEHRLLTGVYYIPALRNSIISLGQLDENGSRVEIKDGVLRI
WDPRHRLLAKVNRGSNRLYVLHVQVAQPFCLAARRDDEAWRWHERFGHLNFEALKQLGNKEMVQGMPCVDHVEQFCDTCV
LTKQRRLPFPRQASFRAKEKLELVHGDLCGPVTPATPGGRRYFLLLVDDASRYMWAVLLDTKGAAADAIRHHQAAAEKEC
GRKLRVLRTDNGGEFTAAEFAAHCADEGIQRHFTAPYTPQQNGVVERRNQTVVATARALLKQRGMPAIYWGEAVMTAIHL
LNRSPTKALDGMTPYEAWHGRKPVVSHLRIFGCLAFAKELTHVGKLDDRSTPGVFIGYAEGAKAYRILDPVTQRVRISRD
VVFDEGRGWTWDKAVDDGSASTLRDFVVDYVHLEGAGGASSSSSPSSPSSALSSPSASASPPPPSPPASPTPPATPRTPA
PAPHSPTPATPRSAPAALVRQRSVEFATPLSGDEDRVDAYHDDEPLRYRTMDNILGNQRVPGLAVHDFEAELHLAHEDGE
PRSFAEAEGDTAWRAAMQQEMDAVEQNRTWELADLPRGHRAITLKWVFKLKRDEAGAIVKHKARLVARGFVQQEGVDFDD
AFAPVARMESVRLLLALAAQEGWRVHHMDVKSAFLNGDLKEEVYVHQPPGFVIPGKEGKVLRLRKALYGLRQAPRAWNAK
LDSTMKGMGFEQSPHEAAIYRRGKGRKALLVGVYVDDLVITGTEEVEIEAFKEKMRATFQMSDLGPLSFYLGIEVHQDSS
GTSLRQTAYAKRIVELGGLTGCNPAHTPMEERLRLSRESTEEEVDATQYRRIVGSLRYLVHTRPDLAFAVGYVSRFMQRP
TTEHQQAVKRILRYVAGTSDYGLHYPRCPGAAHFIGYSDSDHAGDIDTSKSTSGTLFFLGKCPISWQSVKQQVVALSSCE
AEYIAATTASTQALWLARLLGDLLGRDAEAVELRVDSKSALALAKNPVFHERSKHIRVKYHFIRSCLEEGSVRANYINTQ
DQLADFLTKSLGRVKFQEFRTRIGMAQIPHKEPHKT
>Copia-18_BD#LTR/Copia 77-4404 via tfasty with CPSC4B, 1 frameshift and 2 stopcodons. [Brachypodium distachyon]
MPGSEDGDKDKNKGTELGDSGVSPSTPMARLTADEGAELRVVECVIREGGGGMHPPMLTRTNYSDWALLMKVQMQAEGLW
DAIVTGASEVREDRRSLAFILKGVPPELMRTLAVKSSAKLAWETRRTMRLGVECVQEAKAxTRRKDYDKLHFRSGEGIES
YIMRLSAIVNDLELLGDPVTEHNAVLKVLRTVPKPYKEMSTAIESLLDTKQLSLEELTGRLLVVEEREQKEADTSGAQLL
LTEDQWSARQKQRDRGAGSSGSGDRRPRGGDKQKSPATDCGQAKGDDGPPRRKGDCRYCGIRGHWAKECRKRERDRRNQQ
AEAHIAQAEEDDRPAVLLAACVVDVHDSAPSSPVLSRAPSVVAVEEASAVAGEYVFLNEERLIPVPTDDRRWYFDSGASN
HMTGCRDLLSKIDDTVGGTVKFGDGSLVEIHGHGSVFFTGRYGEHRAFTDVYFIPKLRTNIISLGQLDEVGCESRIGGGE
LRLFDKENELLARVTRAKNRLYPIQLTMATPVCLLAAMADDMAWRWHARFGHLHFRALHDLGAKNMVRGMPTIDHIEHFC
DGCEIGKMHRTPFPRVSPYCADKVLDLMHGDLCGPITPASSSGNKFFLLIVDDHSRYMWLEVLRSKDEAFRYFRKIKALP
EIDRQAKLRAFCTDRGVKFNSNEFARFCEEGGIRRNTTAPYSPQQNGVVERRNQTVIEMAKSMMKSMDMPPMFWAEAVKA
TVHILNRSPTMSLKGMTPYEAxRKKKPKVDYLRTFGCLAHFKLTGPGITKLSDRAGRGVFVGYEDGAKAYLVFDPVAKRL
HITRDVVFEEHRPWDWGASLSQADGLDQFQVAFSDDPVVAAPASTSSTPAPAAPAAASPTTPATSTPSSTSSACTTPPAS
PTSPTTSIPAPPTSTAVPYRCTRGMRGIFKPNPRYHNELDFGELCMVAAEEPASVDEALEESAWHAAMESEMKSIRDNGT
WELATLPEGQRAIGLKWVFKVKRDPAGAVVKHKARLVAKGYAQRQGVDYDEVFAPVARLETVRLLLALAARRRWEVHHMD
VKSSFLNGNLLEEVYVHQPAGFINHNNENKVLRLQKALYGLRQAPRAWNAKLDASLESLGFERCQLDHALYRRVEGEDFL
LVGVYVDDLIVTGTAAGMIKAFKMQMHDLFQMSDLGLLSYYLGIEVMQENDRITLSQSSYAGKILAAAGMGDCNSCHTPM
ENRLKLGKMVDGEVIDASQYRSIIGSLRYLVNTRPDIAYSFGIISRFMEAPGKQHCAAVKQILRYVQGTNSYGCVYKSGG
KEEIVGYSDSDLAGDVVDRKSTTGTVFFLGSSVVSWASQKQNIVALSSCEAEYIAASTGACQAIWLSRLLGEVTGKDPQK
VKLLVDNKSAIALSRNPVHHERSKHIDTRFHFIRECIEEGKVDVDHVCTEDQLADILTKSLGRVKFIELLLSRVFIKKCN
TLF
>Copia-19_PIT#LTR/Copia 49-4694 via tfasty with Copia-14_AA, 59.3% SW:1210, 2 frameshifts and 3 stopcodons. [Phytophthora infestans]
MSEYKASTTSDNASTKSTITSATPTTQQQTAVVSVKQPTVTLADASRVGVPMAGVVGQAGASPGLLGVQQPAVPVVQRSK
PFGSSKPPKFSDTFEVYQMSLKLYLEQRDSWSVVTGEEMRHAFDPVLQRQFDDRNRLAMETIIRGVKGADAQKVCICSTA
KEMWDTLTAEKTQRDFSYAVHLKRELYTHSYAPGQKMAEYIQEMNMLRQRLQHMGPSFVIDDTSMSQLMLMGVCAVHREI
VTQFDFSYRQGNPPSLQQVKNALLSRDEMEKMAADTAVNCGASNGGPQVAMHMGKPNGQHYWPNEGPGPGPGPRGQMQTT
GAGKRRAIRCYHCKKVGHMRKDCWHYKNKQSKAQAGKGKATETKKPSNSGGGNSSGLASKPVGSMGFMRFTADAGREDDS
SSSSSSSEGELPFVGMAIQEGRHELSGDWLLDSGTSSHVCNQKEQFTSMKKSKASFKVWDGGITRSKKCGKVLLNALNVL
SGGETTLELDKVVFSPTGPVNLLSLGLMVNKGWELSTSAPGVLPKKQFLTRNGVCVEFIYHGTHYWLNNGSFGDNSAVIM
ATVNADDSPLMKWHERLAHLNEAALKFMVKNDVVRGLDIPAEQLKTKLKCLSCMSTKRKRMSYGDVTEKRTVQNFERLTS
DVCDMGKYGPGIGAMRYFQLIHDEGSRYKWCYPLVHKSEASGNTQRLMTELLAQGKRIITFTSDGGGEYVNSVLTGFLES
KGITFVPTHPYTPEENCLVEKLNGVLVNKMRAVMHAANLPMILWPEVLRYVVEVDNLSPTKALQGLTPTEKLSGLKPDVA
QLKVCGCVGYVFVPKETRKNKLSAKAEPGLFLGFARMGHGYRLLHLRSGKVIEARDVKFREDVTVERTYINALLKGRQHY
FPQIPFVPLPVEYVANEAVRAGAHEAVREAVNETARIDDQPVEQANTEQHDLAAEAAGSVGAASASNDRESQENDDVDDK
MPTADQLRPWSERNPDFLNGSQPRRSSKPSVDGDDQSVSEKKMCGxKTMxWLPGSTRDFRREILLLLKKLxRLHNVKSWI
KAMELEMEAHKVNGTWRLVDRPKGSHNILKTTWVLRAKLNEKGLVDRLKSRLAVKGCGQKYGVDYLDTYSPVVRIETVRM
LLILAFLLGYECYHVDFVTAFLNGVLKGVKIYMEQPAYFNDGSGRVCELLKGLYGLKQASRLWYQTLHEYLEQIGFKQCT
FDVGLYHRWQGGRAVYVTVYVDDLLIAGSKEDIEHVIGELSEKFALKNLGRVKHLLAMEVKYVPGELLCISQTAYIDRVL
ERFGMSGARSAASPQMQNERMPPIEKNQDKTNDPKFPFRELVGALQYLVACTRPDLANVVRTLSRYSSSYTEENYECAKR
VLRYLRATRTYGLVYKRQANVLPLTIDAYCDADHANCPDTSRSITGYILRLNGCMFMYKSKQQSKVTTDTCSSELLAASM
CVEDLMWARKLLKEIRSDKLPCSTLYMDNQSTLTVVTEPGNYQRMKRFAKTSRKIAEFVEKEKIAVQYISSEENIADIFT
KALGPQRFQGLRQKLNVENVEQDEAQHQ
>Copia-18_MLP#LTR/Copia 79-4653 via tfasty with Copia-6_SMo, 59.1% SW:1412, 1 stopcodon. [Melampsora larici-populina]
MSNDHVASSPDPSLTDSETELEDSFSSLSESRTETPGSDGMPEATDSKTFGTPIQQFVQKLTSLLAKYNIDTKLSDGNFP
VWATEVKRVLLAIDYQKYLTKVDFKAPSLTDEQHAKVKLVISIWLLSLMDAHNKTRCQTMLKLQNCNDKADLDDENDDDD
DDDINYEPALIWTFLKNHHQKISEAGLQTIEDAISDMKILSSDSFKVHCDKFNNLIADFVKYKGRISSASAARKLIKTVK
SRINENVSENIYNYVVPLTREGVVQYLIDYEARNGGFTTPAIVEASQSTYSTAAAQSGGGNYRRNKPRCTENKCISSSHD
DDKCFAKPKNHAARDIWIAQMEAKRNRPQYTRQQSSNSSSNVTGIKQLSLPSASVAVASNNPFASLHIYLDEPGEICASA
TALSTFESSHTVFDEDTPAANVVNDSGGHWALYDTGATHYMFKNDQLFTSASMVKVEDSSKRLKLAGGDASLAVHSTGMV
QLKSGSGKMFELNNSLYVPDLTQNLLAGGAMLRKGVQVLVHPNNQNCFSLVFKGEALFNGVFASNNLMYVSLEPVSPITD
STATNISAEDSSNLQHRRLGHLNNRYLKIMCNHKSALGLPKKLSQLDECETCSLSKNVKIPHSSTRPRASRHLENVHVDL
SGIIRVKGLKNEMYYTLFCDDFSSYRHIYFMKDKTKETVYEIFRAYIALAERQTCKMIKQFTLDRGGEFLNDLLGTELRE
RGITLHLTAAHTPEENGVSERGNRTISTKARSMMIESGTPLRFWVQACQTAVFLTNRTITASLSGNRTPFEAWHFQKPTV
DHLCVYGCLTYSLIRKELRGSKFAPVSSKGVLVGFEEDNFNYHVYDLASMKIHITHNATFNENSFPFLEDSPTKSSQNTP
PSTLPDVSLKFFDSDTDDDEEDAVSPKIDEVIPEPVPSVNEPCHGVVQNPPSVVTNDQTAPLRRSARTKGPVNYSASAVC
DDLDESSLRASWELTQLFDCVLPLCNMVTSAQDVPKSYSKAVNGLEGIEWLKACKKEIQAMQDKKVWELVDRPDSSNVIR
GLWLFRKKPTSNAKNPVKFKARFVAMGNTQVEGEDYFETFAPTGKPTSLCLLIAIAAIFGWEVHQMDAVTAFLNCDLHEL
IYVEQPEGFRQPGEEHKVCRLLKSLYGLKQAPKYWQDDVKEFLLSVKFVRCEVDHCIYIRNQGEKFTAVYVHVDDLAITG
NDILTFKLEISQRWEMEDLGLASTVVGIEINRLDTFRYSICQEAYALKVLERFNSLDVKPASTPFTANLKLYKPDQEEID
DFALRKLPYRGVVGSLMYLAQCTRPDLAHAVGTLSQHLDWPGFQHWDAACHVLRYLRGTFNLGITYSCDSTITHVRGLKS
ELCPQAMCDADWAGDRDTQRSTTGYVLILANGAVSWKSRLQPTMALSSTEAEYRAITEAGQELVWLRTMLTTLGLEDKNP
TVLESDNKGAIHLTNKSIFHGRTKHIEIHHHWIREVVNSGKLSLQHCPSHLMIANLLTKPLGSQQFASLRKLLGLKPITR
RTxGG
>Copia-16_GM#LTR/Copia 149-4178 via tfasty with Copia-93_GM, 82.6% SW:3891, 2 frameshifts and 1 stopcodon. [Glycine max]
MTSNGVPMNNLPVLGEKNFDRWHVQMKALLGFQDVYEIVMSGYQEPSASATEAQRSTYKDLKKKDCKALFLIHQCVNDAN
FEKIANATTSKEAWDILIKSYEGAEKIKKVKLQTLRRQYELLAMEETESVAEYFTKILTLTNQMKCCGEQIKEQLVIEKV
LRTLTSKFDHIVVAIEESKDLTSFKLEELQSSLEAHEQRLRERNPEKHNDQALQAQTSRKFDKQGDKSKKNKGKWRDEKW
RKTEDSKCGDSGSSSQKVVSNPRSQFSGKKKWVDKKKVQCYNCRNFGHFAADCRFSKGSHVKGEEARLAQEENTEDDHYL
LMVTTKNDIQGANFWYLDTGCSNHMSGRREWFTTLDETSKSTVKFADHSSITAEGIGSVMIQRKDGKKACISNVLYVPKM
KSNLLSLGQLLEKGYTMEMKDNMLKVFDKDKKSVLKAPLSANRTFRIDIQISDQKCMQSTTEIETWLWHKRYGHLNFKSL
QLLNRKGLVTGLPNIRVPEKLCDECLIGKQARNSFVSSIPTKTVKPLEVVYTDVCGPFEEESLGGNRFFVTFIDDLTRKV
WAYPIKKKSDVFDTFQIWKTLVEKQCESKLKVLRSDGGGEYMSNEFKSYCTKEGIEHEVIAPYTPQHNGTAERENRTILN
MARSMLKTKNLPKKFWAEAVSTSVYLLNRCPIKRLEDKTPEEVWSGTRPSVSHLRIFGSICYKHVPDAIRRKLDDKSEKL
IFLGYHSTGAYRVFNPQTQKLVLSRDLKFDEGQSWNWSDKQGTSELRTRIEGLNTDVGTGDNVVHDEAVSTRPQRNRxAP
ARLDDYEIFPDSSITADGDFVHMALLAEMEPIGVEEALKHSHWVEAMEEELRSIERNKTWSLTKLPTGKKAIAVKWVYKT
KLNPRGEVTKFKARLVAKGFLQKQGLDYDEVFAPVARLETVRLVIAMASYNCWEVHQMDVKSAFLNGSLEEEVFVTQPPG
FVMKGRETEVYKLHKALYGLKQAPRAWNKRIDTFLLQIGFMRCTTEYGVYVKGESLSDILIVCLYVDDLLITGKDCSAIS
TFKQEMKSEFEMSDLGELSYFLGIEFKRTKAGIFMHQSKYTIDVLKRFQMLHCNSVSTPVETSAVLDQSGLEKLVDKTMF
RQMVGSLRYICNTRPDVAYGVGLVSRFLKAPQQGHLNAVKRLLRYLKGTIGFGLLFPTNLSSNSCEMIGFSDADWCGDKT
DRKSTTGYLFQLGNAAISWCSKKQSVVALSSCEAEYIAASMSACQAIWLEALLDELKVKSENGMLLMVDNKSAISLAKNP
VAHGRSKHIETRFHYLRDQVYNGRLRLDFCRSADQLADILTKPLKKERFEDLRRKMGLRSSNEI
>Copia-13_TMe#LTR/Copia 151-4247 via tfasty with Copia-12_TMe, 74.3% SW:3168, 1 frameshift. [Tuber melanosporum]
TPANPSYTSLSHSIERLDGSMATGKSNYVPWKFRILRILKEKGLATAVESLPTDQATTAFTISDRTNDQAFTIICLNIRD
SQIPHIQSAQNAKEAWDALAKVHQGIGANGRMVLMQKLWSLQLGEGQDVSVHLNSFKELSTQVANLSTNGEGIPDSDLVS
MLSLSLPESYEPLIMAVQSRADAVTFDFLAGRLLQEATRRQAARGPNRDQSSQPLSAFTADSGFGTSGHRGRGNGRGGDR
AFGRWGSRGGPSYVKRTRRSGPGAVTGRCHYCDREGHWKSDCLKRKADLERGSVAGHLAFMGLSSAGIESTDWIIDSGAS
QHLTAQRSLLEDYEAISPTSITIGNGNEIKAIGKGNIQLATAAGMVRLQAVLHVPEIGGNLISVASIVDQGFRVEFSKTR
CIVSKGSVTRAIGQRQGNIYFLSGSTHVALTGQSHTGDMAGPEIWHRRIGHRSLNPPADQKIRNAVNGFQVQKSLEYGRN
VCGTCAQGKQTRENLTGERKKCEELVHTIHSDVCGPMAEAGLMGERYFVTFIDERSGRIAIALLRQKSEVFERFKEYKVR
VESQTGKKIKSLRSDGGGEYTSHTLQKYLADNGIIQRITPAYTPEHNGIAERANRTIMEMARCMMFDTGLSTRFWGYAAL
TAVHIVNRMPSGAHENKTPYEIWFGSKPSIAHLRVFGSIVYRHIPAQIRRKLDPRSQKCRMIGYCEESGSRVYRVYDEVD
KKVFVSRDLIFDENTPPTNNAKEEDLFPENEEIIFAEEEAIINEDGCALPLPPIDPAHADSLEPTVDQETIQVRPPPAAI
PTEQRAEEDNLDPTPSGSRRSQRTRQPREMFCPGAWQAFLAVSEEPSTLQEALGSQDSSAWKKAWESELESLRKNGTWVM
ARLPADRNVIGCRWLFRRKGDGRFKVRLVAKGYSQQPGIDFHETYAPVAKFTTLRVLLALVAENDWELHSMDVKTAFLNG
ELEEEIYMECPEGVSEVEKPGYACRLVKAIYGLRQSPRAWYKKVHTFFENLSFIRSSQDFSLYINYQRKVIVLVYVDDLV
LAAADLTDICWIKNCLAESFEMTDLGELTTFLGLEISRKRKLRLLTIHQQQYIERILERHGMQEARPMLTPMDVNCHLTP
ATLDKDVTASTRTISLDVYQSAVGSLMYAMLGTRPDIAFAVGLVSQFNHDPQWEHWIAVKRIFRYLLGTKNLGLRYGTSN
DTGGYSDADWGSGHDRKSVGGFVFMLNGGPISWTSKKQSSIALSTTEAEYMAMTQAAKEILWLRVLLDELGAFKHITPMA
TLYGDNQGAIALARNPEYHARTKHIDIQHHFIRQLVSQEKIYLQYCPTGEMIADIMTKSLPRVTHEKHTTAMGILPDKRS
GSLRVG
>Copia-13_SB#LTR/Copia 1366-5316 [Sorghum bicolor]
MAAANKQPFSLRSILEKDKLNGTNYADWIRNLRIVLRAEKKEDVLDTPLPDEPAENAPAAERNAYKKASDADLEVSCLML
ASMEPDLQMQFDGHSANDMIVALEEMFQTQARTERFNVSKALVETKLAEGAAVGPHVIKLVGYTNRLEKLGFPIGDELAT
DFILASLPPSYGNFISNYHMHGAEKGLNELCGMLKQAEADIKKGASSSHVMAIQNKPNFKKKGNAWRKKKGKAKGETSKP
NPPAPKAGPTASTKCFHCGGEGHWKRNCKVYLESIKDRGSKGTSTRTFVVYITDIFLAQSYINSWVFDTGSVAHICNTMQ
GMIRSRSVEKGEVDFRVGNNARVAALNVGIKQLHLPSGFILELNNCYFIPSLSRNIVSPSCLMEDGYTFASKDNGCVISR
NGMFVASASIVNGLFILNLDDSPICNISAKKPRLNELSPTYMWHCRLGHISENRMKRLHNDGLLTSFDFESYETCEACLL
GKMTKTPFTGFPERAIDLLELIHSDVCGPMSTTARGGFEYFVTFTDDFSRYGYVYLMKHKSETFEKFKEFQNEVENQRGK
KIKALRSDRGGEYLSHEFSNHLKSCGIVPQLTPPGTPQRNGVSERRNRTLLDMVRSMMSQTDLPLSFWGYALETAAFTLN
RVPSKSVVKTPYEMWTGKSPSLSFLKIWGCEVYVKRLMSDKLTPKSDKCFFVGYPKETLGYYFYNRSEGKVFVARNGVFL
EKEFLKREKSGQKVYLEEVQDEPTGNDSKSDANVAEQDEIPVAPPQPRRSTRVITPSVRLREARGELLLLDNDEPATYAG
AVMGPDSERWQSAMRSEIDSMDANQVWNLVDPPDGVRPIECKWIYKKKRDMDGNVQVYKARLVAKGFRQVQGIDYDETFS
PVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLEEDVYMIQPEGFVDPNNARKICKLKKSIYGLKQASRSWNIRFDE
VVKGFGFRQNEEEPCVYQKASGSAVVFLILYVDDILLIGNDISMLQSVKTSMNNSFSMKDLGDAAYILGIKIYRDRSKRL
IGLCQDTYIDKVLKRFNMEQSKKGFLPMSHGMRFSDKQCPSSDEERKRMSKVPYASAVGSIMYAMICTRPDVSYALSVAS
RYQANPGESHWTLVKNILKYLRRTKDEFLIYGGEEELVVNGYTDASFQTDVDDSQSQSGFVFTINGGAVSWKSSKQETVS
DSTAEAEYIAASEAAKEGVWMRRFLIELGVFPNAASPLNLHCDNNGAIAQAKEPRNHQKNKHVLRKFHLIRQFIKRGEIK
MCKIHTDLNVADPLTKALPQPKHEAHKRSMGIRHLRD
>Copia-14_BD#LTR/Copia 37-4331 via tfasty with Copia50-PTR, 3 frameshifts and 2 stopcodons. [Brachypodium distachyon]
MPETAEEALKAAEEARADAAAARAEADAAKAELAALKGKAEAVDAEVKPDALIPVAKALPVRSRGPINFPQLTRTNYTPW
AMQMRVAMQSAVVWEAVSSEAVPFEMDRDALPAIYQGVPEDVLASLTGKDTAKAWDAIKTVCVGHDRVRESNLQALRKAF
EGLEMGDDEQIEAFATRVNKMVSSIRALGDEVNELTLVQKILQAAPTRLMHLVTALEQCVDLKTLTMEDLIGRFKAYEAR
VKQRFGDPVEGQHLMLTRKQWEGYAGKKGWSGSGSGGGVKTSTDHGTGHGKGDSQPSSSKSESNPKKKFKCYNSGEKGHF
SKECKKPKKKRQEKAMVAEKQDEEPALLLSESCIIECNAAVEQGRVYLNEEKVKPKLAENVRYDTKNWYLDTGASNHMTG
SRAVFTSLDKSINGVVKFGDDSLVEIEGRGTVLIETKLGAHKGLTDVYYIPKLRSNIISLGQLEENGCKIALEDGFLKMF
DKGRKLLAVVPRGKNRLYILNVSLGMPVCLLSSINDSAWLWHARYGHLNFDALRSLAQHNMVDGLPLVRNVEKVCDGCLI
CKQRRSPFPKQSPYRSGSGLELVHADRCGPISPPTPAGNRYFLLIVDDKSRLMWGSLLKTKDQAFVAFRKLKVAAELESG
LKLKMLRTDRGGEFTSTEFNSFCEDHRIRRQLTAPYSPQQNGLVERRNQTVVAMARCLLKSQNLPGKFWGEAVATSIYLL
NRAPTKSVAGMTPYESWYGRKPSVEHLRTFGCLAHVKITxPPGGKLADRSTPMVMIGYEKGSKAYKLYNPESGKVCVSRD
VVFEENKGWNWDGVEGHAGSADEEWFMVHTEQEPAGSSENPEMLNDPNMQVQEHDAELQDSVCDPDSQNIVEAHDGNPVT
ENQETPVKLRSLEDLYDETSPSWSPDDFDHMHDLELCMLGADEPVSHIEALKHDSWKQAMEEEMKSIHENGTWELDTLPI
GAKAIGLKWVFKLKKDAAENVVKHKARLVAKGYVQRQRVDFDEVFAPVARMDTVGLLIALAARENWEVHHMDVKSAFLNG
ELEEEVFVAQPPGFEEKSGVNKVLKLKKALYGLRQAPRAWNLKLDQTLLSLGFERSPLEHAVYKRKSENSCLLVGVYVDD
LIITGPKEDELLNFKLQMKDLFSMSDLGLLTYYLGIEVNQSEKGITLCQSSYAMKILEKTGMSECNIAHTPMEQRMNLSK
NCEGSFVEPTTYRSLIASLRYLLNSRSDLAYSVGLVSRFMEKPNSQHMAAVKQILRYVRSTLNFGCCYERGEAGKLGLVG
FSDSDHAGDIDDRKSTTGMVFLLGKSPIAWMSQKQKVVALSSCEAEYIAAATVACHGVWLERLLAEMVERKPEKVLLFVD
NKSAISLSKNPVHHQRSKHIDTRFHFIRECVEEGKVGVEHVVTEEQLADLLTESLGxVKFEKLRRRVGVVDV
>Copia-15_CQ#LTR/Copia 41-4174 [Culex quinquefasciatus]
MSDRNYGIERLVGRENWADWKFAVQTHLEVEDLWDAVEPKVKADGTVEAVDPAKSKLARGKIIQFLEPVNYYHVREAKTA
QEAWKNLVNAFEESGLTREVGLLHKLIRTDLDSCGTMEIYANQIISACHQLKSIGFPIPDRFVGALLLAGLPDRFKPMVM
ALKNSGMAITGDSVKTILLQEEDELLPGEKTFVAKRRVNKPGGYRRNTQTAGGFHGDDKTASGSRSNHGSRKSQPEERGP
RCRKCNKIGHIAKHCPEKDAVRGKQALCTVLSTFKSAGTDDWYLDSGATQHMTRNLELLEDVRDRSGTVVAANKESMEIQ
ACGTATLFPSCFNGEEPVPVSDVHFVPDLSTNLLSIAQIVRKGNTVLFNADGCIIRNADGGVVATGVIEDDLFKVDQRKN
KALACSRVETLETWHKRLGHLNVSSIKKLANGVASGVQINGDGMDDCQICPMGKQARLPFSKSGSRAEELLEVIHSDIAG
PMELPSLGGCRYYVSFIDDKSRRAFVYFLKTKSEDEVLACFKEFHVLAERQTGRKLKTLRTDNGKEYVNKGFREYLKRMG
IRHQTTNDYTPEQNGMAERFNRTAVERGRCMLFEAKLPKPFWAEAVNAAVYLMNRSPTSGHSLTPEEMWSGKKPDLSHVR
VFGTKAMVQVPKVKRKKWDSKSRECVLIGFEEDTKGYRLYDLASKTFLKSREVTFINEGLGEKAAVTKKKPEVISLDFGT
TPKVHAAQQPGLVPPEPDAVEEEQPLDVDDVLEDDGHEEPVVDAAVPGPRTDAVVDDQVASSSSAMTNVLPPQNISKPPG
SGVLGRSGREHILPGKYKDFIVSGKGLPVSTISQALEDDSSDSSEYDDADDVEFGGLATGHRDDPLAEPRTYAEAMASPD
AERWKQAMVDELESIKANETWTLVDLPPDRKAVGSKWVYKIKRDADGRVLRFKARLVAQGFSQQYGTDYDEVFAPVVRQT
TFRALMAVAAKKRMTVKQYDIKTAFLYGDLEEEIYMRQPRGFEGAKGKVCKLKKSLYGLKQAARSWNQKLHDALKRQGFE
RCVADTCLYRKRRAGRWCYVLVYVDDLIVASEDPKMIEALAGALQQNFEMSVLGDIRFYLGMEIEKNAQGDYFLSQRKYI
GEVVESSGLADAKVSTVPLDPGYVKRESKEEPLPDNKEYQKLVGKLLYIAVNTRPDISAAVSILSRKTSRPTQDDWNELK
RVVRYLKGTKDYRLRLSQNGTDNGIVGFCDADWAENREDRKSNSGFVFKVNGGTVSWACRKQSCVSLSTAEAEFVSLSEA
VQEALWLKVLLRELNDEQQVVIQEDNQSCLKMLSAEKFSNRTKHIATRFHFTKDQIEKGEVSCVYCPTEDMVADLLTKPL
ARIRTEKLAGMIGLTAAV
>Copia-15_BD#LTR/Copia 554-4433 via tfasty with Copia2_OS, 5 frameshifts and 4 stopcodons. [Brachypodium distachyon]
MKPxKFNGNHFKRWQTQMMYWLTNLNVYSVITDPEPHPDELLPGAAAYAESYQAKNFNCCGRILSMLSDKFYDIYMHHTS
ARTLWETLEKKYSVPDAGKDLYLVEKYHDFKMTNGKSVVEQTHELQLIVGGLSHSKIALPDKYQVGMVIAKLPNSWRDFA
TALKHRREEMTMDDLLASLDVEEKARAKDAPLVNDDDNxSEFPRCSSEKEQEGPKEPxWFxTKRKDRKGNGKRNGKNLSG
CFECGKPGHMARNCRYKKRNEKVQKDKPDDQTDAKVNMVIDGAEIARCVSNISERIEVQSADWWIDTGASVHVCSDRSLF
STFQEQRGGRSVTGLESKSTVLGSGQVDLKLSSGNVLTLHNVLYVPSGNVNLISGTILMKLGYKIVCESNKAVITFSGSF
IGKGYVDRGLIRLSLFPCSGTSNTAFAVPNSSHSCDNFLWHNRLCHVNFKSISRMMSLDLIPKHDTRGAKCEICVQAKQP
RKPFKSVERDSSFLELVHSDICEMNGILTRGGRRYFLTFIDDCSKYCYIYLLRTKDEAFEHFKIFKAEIENQRSLKIKTL
RSDRGGEYLSNKFSKSHEEHGIIHQTTAPYSPQSNGVAERKNRTLTDLVNAMLGNSGLPNNMWGEALYTACFVLNRVPIK
GSDVTPYELWKGRKPNLNFLKVWGCLAKVNIPIVKKRKLGPRTVDRVFLGYARNSFAFRFLVVKSETTEVRENSVMESRD
ATFFEDTFPMKVRISSSAPIPSEPRISTMSDDSLELRRSKRSRTEKTFGDDFLIYLVEDVPTTIAEAYASAESAYWKEAV
QSEMDSILSNGTWEITELPHGCKTIGCKWIFKKKLKLDGTIDKFKARLVAKGYTQKQGEDYFDTYSPVARMPTIRALVAL
TAAYGYEVHQMDVKTAFLNGELEEEIYMRQPDGFVIPGQEGKVCKLVKSLYGLKQAPMQWHEFFDKTLISAGFSVNDADK
CVYFRFEGNSGVILCLYVDDILIMGTNLDAIAETKSLLSAKFDMKDLGQAEIILNIKLHKRDNGIELNQAHYVEKLLDRF
GHSDSKPAATPYDPCLKLHKNQGPGLDAVKFSQIIGSLMYLANTTRPDICYAVSRLSRYSSKPNSDHRIAIDRVLKYLKG
TMNQSLFYSGFPAVLEGYSDSNWITDSDEMKSTSGYIFTFGGAAISWKSAKQTILTRSTMEAELVALETACCEAEWLREL
LMNLPIVEKPIPAVLLYCDNQAVIAKVTSKKENMKSSRHVKRRLKSVRDLKNSGVVTFDYIKTDENLADPFTKGLAQKSI
QELSKGMGLRPAN
>Copia-19_SI#LTR/Copia 136-4045 via tfasty with Copia1_XT, 73.8% SW:2743, 2 frameshifts and 2 stopcodons. [Solenopsis invicta]
MADIAKISVEKLNNSNYQTWKYEAELVLxRENTWFAVTTDPPAATEKGYEAWTQADSKAIGTIGLLVEKGQHVHTRPAKS
AKEAWENLKKHHEKASLSSTVHLYTKLANTKLAENGNVESILHEIECILDHLVAVGEPVTKKLKIGMMLGSLPSSYGTLI
TALECRAENDLTVEMVREKILGEYTRRRTANEGTQELTETALKIKKETWKKDKKEKKEGxECVFCHKQGHIQEKCYKYLA
QLQLKNTGSEKQQTAKIVKQIPENSEEGSSKSSNDSELFCFKTSMGDQDAWYVDSGASCHLTNNKSYYNRFNKNVCEIIT
LADGRKTKSEGTGDITLSCSNDNGNVKHVQVKSVRYVPNLDCNLLSVRALTSRGIRVNFLENRCEIINGDVIVGTADAVH
GLFKLRCTQKVLMTTNGSHEKCIHTWHRRFGHRNPEAIKLLESKSMACGIKIEKCNERFPCETCTKGKFTRLPFPKKSSQ
QSKIPLDLIHSDLCGPMQTQTPSNKRYIMTLIDDFSRYCFVYLLKEKSEAARRIMEFVILCDTQFGRKPKLLRTDQGREY
LSTELQTFLKDNGIVHQTTASYSSQQNGVAERKNRSLIEMARCMLIEAELPHTYWGEAVITANYLQNRLPSRAIDKTPYE
LWFDRTPNVHYLRTFGCKAFMHVPDEKRRKLDNKAIELRLVGYSETVKGYRLLNTITNKIYVSRDVKFIEKIYRKSYFEL
TDDSVEENHSPKIPIPSKIESSEHASSEFITNEPAPQAEETIRKSSRSTKGIPPQRLIETCKLVSCSIPEEPLTYEQAIS
SPENKHWKQAMEEEIASFQKNRVWTLTKLPSDKKVIGGKWVFKRKLDDKGNISRYRARFVAQGYLQVYGEDYDEVFAPVA
KQATFRTLLTIAGKRNMSVQHYDIKTAFLNGELEEDIFMKQPAGFSVEGKEELVYKLHRSLYGLKQSARAWNQKIHDVLT
KEEFKRANADKCLYSRGSNGKWTYILIYVDDLIIASDNKDQIKKLEEKLSQVFNLCNLGKLKFYLGIHIEQESDGMFAIH
QRTYIDRIIERFGLKDAKPSKIPLDPGYEKFKELSEKLPNNKQYRSAIGALLYLSTYTRPDIAAATSILSRKISAPTEAD
WEEVKRVIRYIKGSRHLRLKLGEDNTNEDTALIGYADANWAGDVTDRKSNSGFVIKLYGAPISWASRKQTCVALSSTEAE
YVALSEACQELWINRLLNDFNICLKEPGILYEDNQSCLKMLDSEKMSNRTKHIDTKYHFCKELKTNQQVHFYYCPTSEMI
ADILTKPLEAVKTRQHVSGLGLIN
>Copia-26_GM#LTR/Copia 208-4194 via tfasty with Copia-2_SL, 85.0% SW:4180, 2 stopcodons. [Glycine max]
MSNTIRIEKFNGKNSFNLWRIKMRALLKEQRVWAVVASASVKKEVASESKEKASISKTEELAEQEEKAHSLILLSLSDEV
LYEVANEETASGLWLKLEKLYMTKSICNKLFLKRRLFGLHMKEGTSLKDHLDELNSILIELRDINVKIEDEDAAMILLAS
LPPSYESFVNSLSVGKECVTMEEVKSSLYSRELRSKAPGNSEESNGSGLVVSNSNKNIKKKVFKEKKKTHVNPKDICNYC
KEPGHWKKDCPKKKGKPSTAVAKEGSTSENELVLSVADHHQHFENQWILDSGCSFHMCPNKTLFDTYEEKSGGNVFMGND
VSCKTVGIDTIKIKMHDGIIRTLTEVRHVPELKKNLISIGIMDGKGFKCNTENGVMKIQKGSTMVMKGIKRGNLYILQGA
TCVEDGLVAVASRSNKSIPDLTQLWHMRLGHMSEKGMMILQKQQLLENQKLDELKFCEHCVFGKQHRIKFPKAMHTTKGT
LDYIHADCWGPARVPSLGGGRYFLSIIDDYSRMTWFYIMSQKSQAFKCFKEWKVLIEKQTKRKVKRIRTDNGLEFCSTxF
NKFCRDEGIARQLTVRNTPQQNGVVERMNRTLLERTRCLLSNAGLNRSFWGEAINTACFLINRTPSSAIGLKTPIEIWNG
KTANYSNLRVFGCNAYYHVNEGKLVPRSRKGLFMGYGDGVKGYRIWSPSEKKVLLSRDVNFDESHLFHPKLEVPIAGTQS
CHSSQEKDEESTAKDSEKGGHSETSPVVFQEGEQLEDFSANESHLAAEPDPPQLNSRINQRPKRVTKPPERYGFDDMAAY
ALHAAEEIDSSEPATYQEAINHPEAENWLLAMKEEIESLYKNQTWKLVELLKGRHVVGCKWIFKRKPDLSEKEGIRYKAR
LVAKGFSQKGVDFNEIFSPVVRHTSIRVLLAIVANQDLELEQLDVKTAFLHGRLEENILMKQPEGFEVQEKERYVCQLQR
SLYGLKQSPRQWYMRFDSFITSQGFKRSLYDCCVYHNKVEDGSMIYLLLYVDDMLIAAKSMCDIQNLKILLSGEFDMKDL
GAAKKILGMEIYRDRTQKRLFLSQKDYIQKILVRFGMTDSKPISTPLSEKEKLSAMIKVQAQADQDYMSKVPYSSVVGSL
MYAMVCTRPDLAYAVSMVSRFLNQPQKEQWKAVKRIFRYLKGTADVGLIYGSHPDCCLTGYSDADFAVDLVKRRSLTGYA
YTLGGCLVSWKATLQPSVALSTTEAEYMSLTEAAKEGIWLRGLINDLRINQEYVNIYCDSLSAIxLAKDQVHHDRTKHID
VRYHFIWSERRVKVQKISTLHNPADMFTKPVPKSKFDHCLSLLNVDCWG
>Copia-25_BG#LTR/Copia 281-5161 61.0% sim to Gypsy-26_BG, SW:2651, [Blumeria graminis]
MANDTPKVPAIPTCTLNDILTAGTLNISPVAWQQIDPSLWFTPVSDNPTEVHVTTWVARQLQDYTYGNLVGDDLFYAFQE
DFATWTEMNFDKINQPFKRELKLLLRKRGIYTGKNNGPIGRQLANLLKIESCPEWPVDERCPNPHERFVTYKPEAKQEDT
KVLLQGTSFLDSNASQQKEKLQGSVTSNLYKNEQPPRQSQAGTSTMLQNPYITLPPEPTVNEDLDPHVLTQFAKLWDKGK
MYSGEPYDILDDKLRIFLNICKFLKIRPGQFHAAFPRILKGRAETYYLHYIGPEANFALAYMKLKAHFDTEINHNTYYTD
WTTTTFHKVRQENSEKSLQEVLQILIDKLELCQRALGPNYTGEEVLRTAVIMACRGVPELKNALFKPAKYCEELYSDLRS
SIETSLNDVPPRQFMTDNQEDNDQYYLDRRYNNNRQGMYKKNNRGNYDQDDSRRSKFRQENLDCNTRSNPTWKKKCFICG
KEGCWSTKHPNDERRRARTRYLAHCHYTGDISNDFATYLVGYEGHEMAVQQDETPNDFEDETCAAETANYLMNQAYLHQL
TGTNVFKEQIDAPANQFFIEDRYSRTVFQGILPDTGAAQVSTAGLEQYLALQRVESSVQLDKSTAGRASVCFGKGSIVNS
IGSTVVRTPIGEITFHVLDTPTPFLLCLADMDRMGVYFNNITDEIIRGNTRIPVIRKWGHPWFFLNRLESCAAFLTEIEL
RRLHRRFGHPSTDRLCRLLRKAGHDDVNEKSLETITKFCHQCQMHSPAPRRFKFTLKDDREFNHEIFVDVLYIIERHVLH
VIDSATSFQGARFLKSLSSKETWETLRMLWIDTYQGPPDIITNDAGTNFASSEFRNEAKILGITCKQVPTEAHWSIGKIE
RYHAPLRRVFEILHAELYSTTSPEAILQMAIKAINDTAGPDGLVPTLLVFGAYPRMTVDSPPSPSTLRRTEAVQKAMKAL
RKLNADRQINDALNTRNGPSTHEILSLPLQSEVRVWREKDGWQGPYKIIATNGHDITLDMVNGPTTFRSTVVQPYYRNSG
ERENLEPQNHLEDQSTNDFQPEIPIMKPQPRKRGRPLGSMNKSKNVSAAYLTKKEEDDYALAIKLRNDGVITSPEPPFEE
SDSNEINDLISRGVFKFELFNSKIHGNHRIFKSRMVREVKGKTTKPYEKSRLVIQGYNDQAKSTILTQSPTIQRMSQRLI
LALAPSLMMKGMIIAIRDITQAYPQSHTNLSRVVLASLPSELKTKYPEGTIIRVIKPLYGIAEAGVHWFSTYQGHHRKLL
DMSTSTFDECFLITNGEIDKFGIVGIQTDDTLMLCTKSFSATEEEKLTEAQFRAKPKVILSAETPLEFNGATIIFENDAI
VLKQKGQGLKLNLVTNKVLDRNQRYIEQRARGAYIASICQPEAAFDMSVAAQAKDPDEVEYTALNRRLKWQIKNIQRGLR
FVPINLATAKIMVFTDGSFANNKDLSSQLGFVLILANEDQIGSKTKVRGNLIHWSSTKCKRVTRSVLASEIYGMVNGFDI
GLAIASSLKMITERLNLPEMPLVICTDSYSLYECLVKLGTTKEKRLMIDIMALRQSYERREVAEIRWINGEDNPADALTK
VSPNRALERFIDNNELTIRIEGSVIRP
>Copia-28_DPu#LTR/Copia 49-4456 via tfasty with Copia-25_DPu, 70.1% SW:3229, 1 frameshift and 7 stopcodons. [Daphnia pulex]
MNCSGSRDVSHIIKFNGTNFPLWKLGLFVSLEEQEVLSIVDGTTRIPDEVTHTYIKTRIICTKVFxLxWEKPKYAYRHPS
DSTTETVSIRLNxPIPFISxILSFSQNYRMIPNENDPEAGVLELTNPAEIMAWKKKDVLARRILLSTIDPNLQNTLLGCK
TANEIWVRLTSQHLKNAAENKYVVMQRFYHYKFQAGNHINHYGIWTxNxFHSVLFLLLLGHDAMSHISAIENLAEQLSNM
GQPVSEAQLITKIICTLPPSYRGFIPAWDNVVEEEKTVALLTARILKEESMTAMYNDGQADPQDTAFFAAGTPQQTSSFR
GNHSRGTTQRGSRGGFGSRGGQTPIQKKPKVECTYCINLGRSGQGHIASECRNRERDERSKRETANPATVNRDNIDFCFP
SCTFDAETSNNADWFADSGATQHMTDQKSKLANFTMVEIGTWTVKGINEALVNVHGYGDVYFTSAVDGVIRTGAFKNVLF
VPKLGINLISIGAATEMGAEVHFVNNKVLFSKNGTVQITGQRKGKTLYLLNLTVKSAQEEVALAAKCPISLSVWHQRMAH
VNVRTIQRMESQQLVEGLSIKSEKDETVPVCTGCVNGKMHRLPFPTGRIRAKEVGELIHSDVCGPMQETSLSGARFYVLF
KDDCSGWRVVNFLKNKSEVATHFKLYAARLETETGKTVKTLRSDNGGEYRGEEFNNWLRSKEIRHETSIPYTPEQNGVAE
RDNRTVVEAARSSLHAKKLPLRLWAEAVAYAVYTLNRTLSSTGKVTPYQTWNGGKPNISHLRIFGSKAFIHIPDSIRRKL
DPKGREVTFLGYSETSKGYRVLIPETQKVQIVRDIIFDxNHKAEERHEPADPPTLPVHPSTLPVHQSKPSAQDEPTENDL
LPAISMTIDPVHTIEEETGPPLCNHGNESNENNIEERPTCANRPYPLRTRKPKVWISMKAAETSDNFEPRTYQEAMQSKN
RHSWKPAILDEYKSLIENDTWEVVPLPPDRKVIRSKWVFTEKAGHNNTPTRFKARLVAKGYTQKQGIDYDETYAPVVKHD
SLRILLSIVASLNLEMIQLDVKTAFLYGVVKEELYLEQPEGFVLAGREKEVCRLKKCLYGLKQAPRVWNQKFNEFLLLFG
LSRSTADPCIYFRRREEELTGTLIAIWVDDGLVCSSSAEVIKDVLKHLNTYFEMRALPADCFVGMEITRDRARRQLYVNQ
AKFIATILDRFNMDSANPKATPADPSSRLTMSMSPTTESGTFVMRKVPYREAVGCLMYLTIVSRPDIAFAVGQVSRYCEN
PGPAHWEAVKRILAYISGTRKHGLLFSGSSQPLNGFSDADYGGDLDHRRSTTGYIFTHNGGPVAWCSRRQTCTTLSTTEA
EYVAASETSREAIWLRHLLQDIDLANPNPVKIHCDNQSAIQLVRNPVFHARTKHIDIRYHFIRDQLESNKIDIIYIETKM
QIADILTKPLATPLFERLRDQIGIIPVPI
>Copia-29_MLP#LTR/Copia 59-4546 63.8% sim to Copia-6_SMo, SW:1494, [Melampsora larici-populina]
MSAEDADPFTDDDSQDNSTVTEGSSTSSSADSSGTARQDLSNPLSSDVLSDPLNLKDSVSNKMSDHAESRVFGDQIQKYS
QIMTNALSKYKVSDDLTDENYVEWSQSLMEVFRSLEFHHYFKKENFRKATLSDEEHEKTLFNLTMYILQRLDTVNKVRTR
NHLTDPKDASEIIYDPFKCWNFLKSYHNRISEDKLEAVTRALYACQITKADTLTSFIDKFENLVREFYRLKGELSDIQSA
RMLLGAIPSLSAETKDYIHNTVVPLTREGVGTYLRKYEERHGWTCAAIREVNAVSVRPSKKTSGECTPDECVGPHLAKNC
WSKPENADKRLAFLAKIRAKSGGGNSSSNSTSLTSQTTSVKGVKKVFDASVNNASASMAFLSLNAEFDDVFSNDSKETIY
SASPSEFEEDPVISASVTAALSSTSRDWALHDTGATHHMFKDKKFFVQSSLINIDDANKRLKLAGGDVSLAVHSRGVARL
LAGDETPFELKNCLYVPELSRNLISGATLKKQGVRELFHDSTNFSLVLNGLALFNGFISDNNLMFILLEPVSGPHSASVS
ASSTEITASLQHRRLGHVSSKYLKLMAKLESVEDFEYIDENLNCDICSLSKNTKIPHNKTRPRARTFLENVHVDLSGIIR
TTGFNNENYFILFCDDYSAYRHIYPLSDKTKEEVYEAFMAYIAVAERQTGCSLKQFTLDRGSEFLNSLLGPKLKELGITL
HLTSGHAPEENGVSERGMRIVNTRARSMMLQSALPIRFWYFACSAAVFLTNRCVTAALEGGKTPFEMWFYRKPSIHHLRV
FGCQAFGLIRKELRQSKFSPVSSEGVLVGFEQDNFNYQIYDLSSRKIYITHHSTFNEEVFPFKSIQSVSPSIPNEPDRTS
VKIRFFDDEDEDFTEPVTPITSPGEIHEESTPSAPVTSNLPTSNPTQPRRSERSSKKVYDTLRGMCTSGAEFDDDWITES
FFACVAQDCFSAPDPKSYKRAMDSPEAKLWKAACEKEFASLRNKEVWELVDHPKDRNVIRGLWVFRKKSLVDGSIKYKAR
FVAMGNTQVPGQDYGETFAPTGKPSSLRLLIAIAAINGWEIHQMDAVTAFLNGILHEELYVEIPEGYRTASTVGKVWRMK
KSLYGFKQSPKIWQDDVEAFLIQIGFYQCEIDHCIYIRSVGKLFTAVYVHVDDLAITGNDIARFKVEISAKWEMEDLGLA
NTVVGIQIQRIDDHSYSMSQHQYALTVLKRFEMTNSKPAITPLSPNVKILKSTEEEVQEFAKTKLPYRSVVGSLMYLAQC
TRPDMAHAVGVLSQHLEQPNKQHWDSAMHVLRYLCHTINVGIVYSGNYPKIISGQRSFECPISHCDADWAGDVNTRRSTT
GYVFVLAGGPISWRSRLQPTVALSSTEAEYRAITEAGQELLWLRNMMSRFGFIDPNPTVLQSDNLGAIHLTSKSIFHART
KHIEIHYHWIREVVKKGDLSIKHCPTHLMVADLLTKQLPKEQFSNLRKQLGLRFLG
>Copia-29_DP#LTR/Copia 126-4065 via tfasty with Copia-1_DVir, 88.7% SW:4937, 1 frameshift and 1 stopcodon. [Drosophila persimilis]
MNLSNQIEKLDEGNYSVWHMAMKSVLVMTELWDVVCGKGSGGDAAAVEKWNKLDQKAMAYITLNVKASQFVHIKTCETSE
AIxKKLKELHMPKGPIQKVQLYQKLIRLNMQQGDDVSAYVNSFVETIEKLAELDIKLHDELKVIMLLSSLPKSWENFVVA
IETRDELPKFEALKVKMLEEGTRKQEKAERENHSATQAVYTHTQRRSRENENVENNGTKNDGNTGVKQQFKGKCFKCEKT
GHRASECRSKKKGSKTNGQREQASSLMHCFVGEQQKRVWCVDSGATSHMCCDRSMFLNYVEKETSIMLATNKFVSSPGSG
NVKILGENILINLQNVLYVPELHMNFFSVSTAAKFENSTTFIGKVALIKNKKGETIIKAKQENNLYVYKHAQKKVQFIWF
NRFGHLNFQDLKQLNDKQLVHGMNFENVKMEINCDTCNRAKICALPFQQKLNRTTEQVLELVHTDVCGPMNVKSIGGNRY
FVTFIDDYSRKIFVYIMHAKSQVFEKFKMFKSFVECQTGNKIKAVRSDNGTEYVNKEFSGFLNECGIQRQLTVPYTPQQN
GVAERANRTIIEMAKSMLIHAKLEEFLWAEAVTTAVYLRNRCPTKALSGGTPFEAWKGRKPSVKHLRVFGSRAFALYKTR
RSKFQAKGKEYIFVGYSFTAKAYRLYDRENRTIIERRDVKFIEGEIDTKSIENCGISDRNDDFMTNILRLESIKVPDQHS
YAPLIADHANSSSDSSEVEEEFLSASEPDDNSVSGQEVPPQENVVQRGRGRPKIIRSGQPGRPKKQYQAVLNSFLNQMDD
TETPQSVAEALQGDHSQNWKESMQTEYDALQENNTWSLCELPPGQKAIGSKWVFRIKRNKDGIIEKFKSRLVAQGCGQQF
GVNYWETFSPVIRYETIRMLFAIAAEKQLYMHQVDISNAYLNSKLHETVYMRQPQNFVDKHHPEKVLKLRKALYGLKQSG
RVWNKTLDEVLSTMGFKRCKNEACLYVKKDEQTYSYIAVYVDDLIIACPNKNDIASNFKMHDGGPINFFLGMEIERDGEQ
GSISFCQKSHIQGLLDTYGMSKCRPVSTPLDPGYQVGCIDDNCVKVNVTQYQSLIGSLMYLAVLSRPDILHAVSKLSQRN
TDPHAEHETAAKHILRYLAGTKNLGISYRKCGEPVRGFADADWANDRLDRRSYSGYAFFLAGSAFSWTSTKQSVVALSST
EAEYIALSMAAKEAIYLRRLLDEIGWSTVTEPLTIYGDNISSQHIAQNPVHHKRTKHIDIKYHFVREKVECNEIILEYVS
TNGNVADLLTKCLSKKKHDDFVKLLGMTKLNMR
>Copia-23_ST#LTR/Copia 138-4859 via tfasty with Copia-74_ST, 78.4% SW:4591, 2 frameshifts and 1 stopcodon. [Solanum tuberosum]
MDENQAPKANNPAPVQTVVDLNSVFYMHPSESAGSAIIPVIFDGSGYRSWRRGVLRALSVKNKTGFINGKVDKPSPNSAL
LTQWERCDDMVTSWILNSLSKDIGDSLQYVNNARELxVELEDRYDQPNGAKLYQLQREINDLSQGNLDVTGYYTQLKRLW
EELSTLDTSCQCTCLCICGGKVKMHKAEQDRRLIQFLMGLNEAFTIVRGSILMMNPLPTMAQAFSILVQEERQREVKPHN
KINMESASLHVNAASTSTNFRTNYVSSYKNGGGSRPPNRSNLFCDYCRKPGHTRDKCYKLHGFPSDFKFTKGKNAGTAAI
AHGYPEDTMNKGKGSVESVEGSVYKRQGQLLTRQQFDQLVHLLQHVQIQEESTTGTVNDNTGGAVNFAGILACCSSISDI
GNLSCKCFKLSVDSWIIDSGATHHMTFNKSLLTNIRHLPYPFLITLPNGYKVKVTEIGDVCLNPSLTLWKVLFVPSFKFN
LISVHCLASHLKGVVSFNKFSCLMQGPSLKSPLEIGRARNGLYFLCSKCHTSCPDHTSTTLRNATSMPSSSSSLTSLSVH
PVSSCKSSCNLLNFSSDVSTSHAHTNAPVRSICCSNNKIVSPVPTAASYVSTANNPFITCISHGNSVDHLWHNRLGHVPF
IKMKRISSIPITFSSKQPFMCAVCPMARQTRLPFPTKTIVSSSKPFDLLHMDLWGPYHVSTHDNYKYFLTIVDDFSRATW
THLLSCKTNTLHVMSSFVTLMENQFNTTVKSIRTDNGTEFTNNETNKYLKNKGIIHQKSCPYTPQQNGVVERKHKHLLEV
ARALLYQSKLPTKYWGECILTATYLINRLPNSVLHDKTPFETLYNTHPTYSHLKSFGCLCFPTLKTHKAKFDPRSTPHIL
IGYPFNTKGYKVLDICTKKIHVSRDVVFYENVFPFASCDSESDTSFSTVLKKFTSASNILSSTNSSNNIFDNSDVLDDST
TSNVILPEPTSPPAPVSPPEALPVDQPSNEQLSRTHILPETTTHQNQLPNTRKSSRPHVVPAYLKEYDYSLPSSTHHSSP
KNHYSLTSFNQDSQQLVRNVFHDREPVSYEDAVSDPAWQVAMTSEFEALYANHTWDLVELPEGKKAIGCRWVYKIKHKAD
GTIERYKARLVVKGYTQQAGIDYNETFSPVVKMTTVRTLISLAVKKGWDMYQLDVNNAFLHGDLYEEVYMDIPPGLMVQD
TGLVCKLKKSLYGLKQASRQWYDKLAQVLCSRGYSHSDSDYFLFYRKIGSSLVFVAVYVDDVILTGTDEHEITSLKAFLH
DEFKIKDLGRLQYFLGLEILYKDTGVLISQRKFTTDLLQEFDCSDCKPVMSPLESTVKLKANEGALLKDPTHYRKLVGKL
NFLTNTRIDIAFSVQHLSQFLQSPREPHLKAAYHVLRYLKADPCLGIFLSNSTDCSVTAYCDSDWASCPDSRKSVSGYIV
LMGDSPISWKSKKQTTISLSSAEAEYRAVRKVVGELVWLERLLTELHQPCNLPVSVFCDSQATVHIARNPVFHERTKHIE
VDCHFVREKLQEGLIVLHHIPTGDQLADVLTKPLPSAQHSILLHKLAVSYSHPT
>Copia-20_GM#LTR/Copia 17-3903 via tfasty with COP18_MT, 80.4% SW:3736, 1 frameshift and 4 stopcodons. [Glycine max]
MSSTKFDVEKFTGKNNFNLWRVKMLALLTQQECELALEGEEMLSAELTAAQKRMIMKxAYSAILLSLGDEVLGEVSGEKT
ADKLWAKFESRYMTKSLHNRLCLKKQLYTMQMHEGESIHKHIDNFNQVVLSLKNIDVAVDDEDQVVLLLSSLPRAYDNFV
DTIIFGRSSLSMEEVKTALQSWELKRxITNSYGGTSSGEGLMVRGRMDERKSFQRRRSKSRSKNKNNNKCHNCQKEGHWK
RNCPELKKDKVSTSEFGGAAVVSEESDGGNVLFVSSNVNEDDWILDSACTFHMTPNRDWFATFQNVDGGKVLMGNDGACS
IAGKGTVQIKMNDGIVRTLTDVRYAPELKKNLISLSTLDSLGCTYRAGGGDLRVSRGSLIVMKGKLKNGLYILQGSTVEG
TTAVSSISNTDQSRLWHMRLGHMSERGMDELSKRGLLGGRRIEKLDFCEHYVYGKQSRVKFSTSVHRTRGTLDYIHSDLW
GPSTVPSHGGAKYMLTFIDDYSREVWIYVLKQKSDVFLKFKQWKSLVEKQTEKKVKxLRTDNGLEFCNNEFNEFCANExI
ARHRTVRHTPQQNGVAERMNRTLLERARCMLSNAGLPKQFWAEAVNTACYLVNRSPSTAIDCKTPEEMWSGSTANYSILR
VFECPAYAHINEGKLEPRAKKCILLGYQDGVKGYRLWDPKESKLLISRDVTFDETAMLNPRPHKDHDNKVEVHGDIKKVE
FEVEARKPEEIYDESEVTPTEFEHTLASDRPRRQTRPPQRYDDFVAFALNMAESIDDEQEPSSFHEAVTCDEASQWIGAM
KEELESLHKNHTWKLVEKPVDQKIVGCKWIYKKKDGIRFKARLVEKGFTQRKGIDFNEVFSPVVKHSSIRVLLALVSLLD
LELEQLDVKTAFLHGDLEETIYMQQPDGFIVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDSFMIDIGYIRSEYDSCVYHK
KLFDNTYIYLLLYVDDMLIACKHPNEINKVKTQLSGEFEMKDLGPAKRIIGMEIIRDRKIGRLCLSQKSYVEKVLERFGM
HNAKAVSTPFAAHFKLSANMSPQTKEEEEFMSRVPYSNAVGSLMYAMVCTRPDIAHAVSVVNRYMANPGKSHWQAVKWIL
RYLRGSTNLGLVFGKATNECNGHVIGYCDSDYAGDLDRRRSLSGYIFTLGSSAISWRATLQSTVALSTTEAEYMAATEAV
KEALWLKGLVGDLGVSKKEVVVHCDSQSTIHLTKNQMYHERIKHIDIRMHFIRDVVTQGDVLIEKISTSDNPADMMTKAL
PTIKFKQCLDSVGIKN
>Copia-20_DPu#LTR/Copia 682-4873 via tfasty with Copia-19_DPu, 3 frameshifts and 6 stopcodons. [Daphnia pulex]
MYERIRNQHARTAADNRLILLQQFTEYKFQQGHNVTSHVTALELLWSRLTEIGEHILESQVIAEILSTLPSTYRHFYTTW
NNSPEAGRTVKLLLTKLQEEEEITQAFNRNNPSTEGAYAAPNHFQNPAQRNQNQSLxQPYSRPHPYSMSRGGHQGGRIPV
RKRRLSRCQRRYRGGFPGGFRGFRSGPQVQRELCSYCGLGPHKATNCRNRMRDESEALQQQQSNAKFSHAEQTSENFEFG
YTSQNIQDFETFGFVADSGASEHMTDKRSIIINFRPIQTGTHSVHGIGNTCLEAKGRGDVEVVNAAGTTLLLKDVLFVPG
LGINLFSISATTSKGAEAIFFKDMVQQTHxKHFFFSFFKxTFYFSxVNIYRDGQLEMTGQRASEKLYYIDIIVKVQESCL
SATSRPLPISIWHQRLGHVNNKTILKMSKENAANGLKIEETSKPPTLCHGCVLGKMHRSSFPNERTRKNHVGDLIHSDVC
GSMQTMSPGKSRYYVLFKDDFSGWCEVQFMKNKSEVFHHFQNFVAAFKTQYNHIVRILRSNGGGEYISQEFEEWLKKNGT
NLHKTHVNYExSNKCVIIGIKHERSAPYTPEQNGVSERTNRTIMESAQSMYLANNLPNELWAEAVAYATYIQNRVVTTKR
KITPFEVIHGRKPDIHHIRMFGSTAFIHTSDALRRKLDPKAEEGIFVGCCESKRTYRIWIPPKRRIVISRNVIVDEQNQS
LKDEKLSSTTPFDSFFRQDSTEHPKTDDCTSADRQTADDKQEQSESSTTMAEDTAVEVPHKEEDATQAEKTSNNEEPAAQ
AEDTSNNEEPDPTEEIADQPTAEIPTTKRKSSRTPVFSGKFLEWKRSLSKNKENKSKSFGMEVTSTILTEKPEPRTYKEA
MESEDAEKWKSATEDEYKSLMANLTWILVNRPNGRNIVGCKWVYKVKPGYTGVAERYKARLVAKGFTQQYGTDYNETFSP
VLKYNSLRTILAITAQHNLNISLLDVKTAFLNGELNEEVFMEQPEGFVESGKEDxVCLLKKSLYGLKQAPRMWNIKFNQF
LIRFGLKRSELDSCVYFRRNGTYLLIIAIFVDDGLVCASNIQLAESVIDSLSEEFDMRSLPATRFLGLDLHLRNHKILIN
QPEFIKKVLNKFNMGSCKPTSIPMDSSDVFDDANIRRGDFPYGKIPYREAVGCLLYISITCRPDISYVVSQVAKFCQNPG
RAHCERVKKILAYLSGTTELGIMFEKNETSPISGYTDADYGGDLDNRCSTSGSVFFVYGNLVSWSSKRQKCISQSTTEAE
YVAASDACKEAVWLSSLLTELGETEEKSVPMYCDNQSAIQSIRNPTFHQRTKHIDIRYHFIRSLQENGIIVVSYVPSKEQ
KADMLTNPFQNQNSKECVNSWAYVISLCLLKIPWLER
>Copia-20_SB#LTR/Copia 59-4405  [Sorghum bicolor]
MSLTVSEGSRGGGDSQRQLFPTLTATNYTSWSIRVAAIMEEQGWWEIVEPPEGEAAGALTAAQSAKDKKVRTHLFQCVSD
ELLMQVAKKKTGREVWEALKARFVGAERVRDARLQTLKSEFDALGMKEVETIDEFAGKLTAMSVKYSNLGGSLEDAVMVK
KLLDTVPDRFIQCVAGIEQFCDLKTLALDDVIGRLKTYEERTRRGAGGVRSDSGQVLLTQAEWDARQKKSTGECSSGGKS
QGGGGRGRGHGRGGRGGRGGRGDAGGTEKKDKSHIKCFKCKQMGHYANRCPNQKKEEEAHHSKAEIEPSVLFAEMEVVNP
GKSSHQKFQNKRCLNGGSMQPELHFTGNGEPTGDTWYLDSGASNHMTGDRKKFKEIDSSFLGKVKFGDGSTVDIQGIGSI
VFDGNSGNKWVLRDVYYIPKLRANLISLGQLVEHGHVVVMDEDIITVTEKIPHRMIMCVQRTANRLYKIGLSVGEPACLL
ASLEDQGWLWHGRLGHVNFHALKQLVDKEMVGGVPLIQKPDQVCQSCLVAKQTRSSFPRSALWRAEEPLGLVHVDLCGPI
TPTSVSGNKYFMLLVDDCTRWCSVFMLKSKDEAVEAFVKFKAQVENNCNDRIKVLRSDRGGEFLNEALQTICDHAGIRRQ
FTAPYTPQQNGVVERKNRTVMEMTRALIKSMGIPGRFWAEAVRHAVYLLNRLPTKAMGSRTPYEAWNGKRPHLGHLRIFG
CKGHVKTVKPHLKKLDDRSVPMVYFGIEEGSKAHRMYNPQTNRIVVSRDVVFEETVMWDWGAADNAEISDEMEMGQWNSQ
IYLNNDGRDVDMESHGDHHNDQGAGDSTRQHSVAGGDGVSTESTGQIESVQNPTIGIQTEAAQHSDQSSGWDQDMVDAVD
SDDYDETPKRFRSLDEVYQHSQIVNLDSDTDEEGNAGAGGQENAVEVAAMLTVMEEPTCFSEAVDDPNWMQAMDNEMQSI
CKNGTWELATLPPGQKPIGLKWVFKLKKNADGEVVKHKARLVAKGYVQQQGVDFDEVFAPVARLDTIRLILALAANRGWQ
VHHLDVKTAFLNGDLEEEVYVAQPEGYVVKGKEQMVLKLSKALYGLKQAPRAWNIKLDKTLRQLGFRKCASEPAVYRRGT
GKSTVVLGVYVDDLIVTGEDVSEIDKFKKQMTSQFEMSDLGLLSFYLGIEVEQLEDHITIRQSSYAKKILSQFGMRDCNP
AKYPLNPGTKLDADKQGERVDATEYRKIVGCLRYLLHTRPDLSFSVGMASRFMEKPTTKHRDLLKQIMRYLRGTLNFGLV
YVQSKTEEVLTGYSDSDVGGDLVGRRSTGGMAFYLNENLVTWCSHKEKTVALSSCEAEFMAAAEAAKQALWLRTLLGELT
ARKAKEVTLFVDNNSAIALMKNPVFHGRSKHIDIKYHFIRECIERGQILVKRVCTNEQRADALTKPLTAVKLAVMRRLLG
ARELGPHQA
>Copia-22_GM#LTR/Copia 45-4442  [Glycine max]
MPPRIAPPPPADPSTDPTSPFFVHPSDGPSSVKVTPLLDGSNYHSWARSLRRALGAKLKFEFLDGTIPMPVDAFDPSFRA
WNRCNMLIHSWILNSVEPSISRSIVFMDNASDVWLDLKERFSQGDLVRVSEIQQEIYALTQGTRSVTTFYSDLKALWEEL
EIYMPIPNCTCHHRCSCDAMRLARRHHHTLHVMRFLTGLNDEFNAVKSQILLIEPLPSITKIFSMVIQFERQNCVPNLDD
SKALVNASTSKSQGSANGRSNSGSKRYCTYCHKTNHFVENCFQKHGVPPHMMKNHSGSAHHSAVDGGERVESSTASQNTT
SVTMTPSLTQEQLDKLLQLIQPPSVNHCNASTSKQVCSFNTAGPSSADTKGMKISHFFYSSICNNIALDTWIIDSGASHH
ICASLHWFHSYSEINPMIIKLPNGNHVTTKYAGTVVFSSSFSITNVLYVPTFTVNLISVSQLCHHTPYTLNFTDTICSIQ
EQKSLKMIGLGESRDGLYYLTQTNKECASSNYNISSIFSSANNVHIPENAIWHFRLGHLSSSRIALLHSQFPFIVNDSSS
VCDICHFAKHRKLPFVHSYHKAIKCFDLIHFDIWGPISIKSVHNHAYFLTAVDDHSRYTWITLMKNKSEARLHVQNFIHF
IKTQYNHSVKSIRTDNGPEFLMPDFYASKGILHQTSCVDSPQQNGRVERKHQQILNIGRALLVQSNLPKSFWCYAVSHAV
YIMNRVPAPNLQNKSPYTLLYNTAPDFDTLKVFGSLVFASTLQSHRTKLDLRARKCVFLGYKSGVKGVVLLDLLNNSIFL
SRDVTHHEHIFPYQSSSPKTPWEYHSISPTPNDSDITLDSDISLDINAEQSPSPPHSSLSPNISNDTVISDTSTSTPPPK
DHNDSPLLHSKPIRQRRAPLHLSDYVCHNTSPTSHESLTSGTKSKYPLSSFHSLTLLSPSHKAFSMSITHCTEPQSYEEA
SKHEHWVTAMKEELNALAKNCTWKIVELPPHTKPIGCKWVYKVKHKANGQIERYKARLVAKGYNQVEGIDYFETFSPVAK
ITTVRTLLAVAAIKNWHLHQLDVNNAFLHGDLQEDVYMKIPDGVTCAKPNSVCKLQKSLYGLKQASRKWYEKLTNLLLKE
GYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDSIDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRK
YCLDLLKDSGLLGCKPASTPLDTSIKLHSAAGTPYADISGYRRIVGKLLYLNTTRPDIAFATQQLSQFMQAPTNVHFNAA
CRVLRYLKNNPGQGIFFSRTSEMQLIGYSDADWAGCMDSRKSISGYCFFIGKSLVSWRAKKQATVSRSSSEAEYRALSSA
ACELQWLLYLFADLRVQLTRTPTLYCDNQSAVHIASNPVFHERTKHLEIDCHLVREKLLKGTLKLLPVSTSDQVADFLTK
ALAPPKFHDFVSKLSMINIYHDKLEG
>Copia-21_SI#LTR/Copia 233-4161 via tfasty with Copia-24_SI, 79.0% SW:3345, 1 frameshift. [Solenopsis invicta]
MTENFYSKNITKFDGKNYQSWKFQMKAVLVANDLMEIVDGTKVEPEAVAERDAWKKSNAKAMFIISTSLEESQLETLITC
NTATEMWAKLRSVHEQTSETNKLILTQRFHAYRMEHNMSISQNIAKIENMARHLKDLGETISDVAIMAKILGSLPSKYSY
LVTAWDSVDPTRQTLEYLRERLLKEEARLSSTDEMTNALAAVSLKTNQSKSESNLQKKPEISNAIRGSTVKKVECFYCHK
LGHMIKDCRNRKKKDQEKSGKLETVALVVTQSTADTTTSESVSAHSKEISEILSYDKDNIWYADSGASKHISFRREWFSE
FHPSSGEDIVLGNEAKCKVLGSGTIAAKRLVSGRWLDVKLEDVLYVPNFGRNLISVGYCTKKKLTVTFHDDVVTISRDGE
YIVGGIKQENQLYRLFMKPMLHEANVASFQTWHERLGHLNKNYISEMAQKGLVAGLDLSNKSDFFCEDCQYGKMHRKPFR
NTDRTQTMKIGDLIHSDVCGPFQVDSLGGARFYVLFKDDFSNYRVVHFIKHKADVFDKFKEFEKSIQNRFGHSVKRLRVD
NGREYCNKEMSNYLVKKGISLETTAPYSPEQNGKSERDNRTLVESARAMLHAKNLPMFLWAEAINTAVYVLNRSVCSKTK
DSTPYEIWTNKKPNLSHVRIFGSNAFIHIPKVHRQKLDPKARKLMLVGYQGESSNYRLYDPSNKRITVSRDVIFNECPSR
EMASSKSVCLEIGLENLSKDLPTQDIPNEVQENNEQKQNQENGDRSNIEEPTRNEATQRILRDRQSIRKPDRYEANFLQF
DEPKSYEDAIHGTHAEEWKCAINEELAAHKKNGTWEVITLPPGKKTIGAKWIFKVKQSSSGEIERFKARLCAKGFTQTKG
VDFTETFSPVVRYDSIRTLLAIATEKNLKMQQFDVKTAFLNGDLSEEIFMDIPEGVQISNIRGKVCKLVKSLYGLKQASR
CWNLKFDAFLKDYNFTQSAADQCVYIGSINGSLTYVVLYVDDGLVFSESKESLNSIIRDLSDKFEIKLCDGKMFAGVQID
RDCKNRTTFIHQSLYAERLLYKFNMAEAKPVSTPIENGFDFNSSDDGNVSNFPYHEAVGSLMFLATVSRPDIAFAVNVAS
RYFNNYSNIHVSLVKRILKYLKGTIRKGIVYKSDGSVLELVGFSDADFAADCETRRSTTGYLFQLAGGPITWSSQRQKLV
TLSTTESEYVAACAAAKECIWLRKLLHDINHKCNSATIIYVDNQSAIRLVHNPEFHCRTKHIDVKHHFIREKFQNNEIEV
SYVPSDSQKADLLTKAVPKMRFEYLVSFIS
>Copia-8_Mad#LTR/Copia 418-4672 via tfasty with Copia33-PTR, 4 frameshifts and 15 stopcodons. [Malus x domestica]
MVTSAQLMLTQSPSASLIPSVSNTVTVKLDDSNYVTWNFQLELLLDGFIGFVDGSIPCPTKFVDSEFEGEVDNPMPIISD
AYKVWKIHDKALMTLLIATLSTATLSCVIGCQSSQEMWLSLRERFANMTKTSIFxMKIDLQNIxKRSKSIDEYLQRIKDT
RDQLATVRVFISDEDIVIVALRGLPSEYNTIKSVIRGRETIVSLKELRSxLRAEESTLQEISKQVPLMFAMLAQSSKSGT
HMGSFSASSxFHESQSLQQMPFPNQFSQLPVSGPFAFVSQTGTGSYNNFxGNNWKNKGKGKKFLFGFQPSQSxFSGSPSY
PQQFQSGVQPSGQQMSSPQAYQPFxKYQICDRKGYSALNCYQNGCQIYHRVGHTDATCCLQATDVFVLSQTSSKSLExKV
HQVSVVFGIQVFIRRSISFCQTxWLFYCHPPLICGxYNTHWxQFxSNSVLHVPQLSQHLLSMNQLCRDNHCRCIIDDSSI
CVQDKVTQKTLFQGLSNNVFYPIPVFKLPPHSPVAYLDQKVSSTLWHCRLGHPINSVVKIALSKSSIPFTCNSSPHTCTA
CLEGKYNHLPFEVIHSDVWGPAPQMSIEGYRYYVSFIEECTRYTWIFPLINKAVVFAVFGVFVQFxQFQAFLHNKGILHK
KSCPYTPAQNGLAERKNRHVIESAITLLQAASLSSNFLYHGCAIATYLINRMPTPVLGMQSPFESLYHSPSRLDHLKVFS
CACYPSLKPYRSNKLEPKTTMCIGFLGYTAYYKGYICYSLKKLLVSRHVLFYEAVFPTLKPDVTTEPKVAVSNxVVHPNT
FVLTPVIPIPLPVVFSHSPCMSSITQTHLCNIGDLVPTGYSSTLRPNSEFSADLELHPPTTTSQVSELQLVHISSxNSYP
MQTSSKFGIFKKKQVFHAQIHSASDTEPSSFNIASKFSHWTNAVNEEMSALHQQHTWTLVPLPADKNLVGCKWIYKIKRH
FDGSIARYKARLVAKGVSQEAGLDYYKTFGLVVKPTTVRLMLSLAATKGWKLKQLDVKNAFLYGFIEEEVYMSQPPGYID
KTHPDYVCKLQRSLYGLKQAPRAWNERFTKFLLSLGFKSSYADSSLFVRHDGYSIVILLLYVDDIILSGDNSDQIQCVIS
QLTTEFDMKDLGILHFFLGLQIEYQSQGLFVHQSKYVKELLVKSDMFNCKPCLTPCHPNKKLLNHGSSVYLDPKTYRSIV
GALQYLTFTRPDIAYSVNQVCQFIHSLLESHFVAVKRILRYLKGTLDWGICFRPGSLSLKAYTNADWAGDPNDRRSTTGF
VIFLGNNPVSWSSKKQHTVSRSSTEAEYRTMATTTAELMWLQQLLKDLHIDTSLPPLLHCDNTSAMSLATNLVLHSKEKH
IEIDCHFVRERVQQGTISLQFVASVDQYADILTKGLCSPLFSAHCSNLMLGQSQHKIEG
>Copia-8_DAn#LTR/Copia 97-4304 via tfasty with Copia-6_DWil, 68.1% SW:2573, 2 frameshifts and 3 stopcodons. [Drosophila ananassae]
MASAFIKIEPLSAENYDTWKLKMRAVLVKSELWQYVDGTNICPKKNEDRDAWKMQDEKARADILLSISTSELYVIESCAT
SRDCWIRLQETFQSTGPARKASLLKRVALSRMQEGTDMRQHVSLYSLPGSYETFRCAMETRDDLPGPEVLRVKILEEADA
RKTKSDCEEQNALYANRRKGKVEKKETRTCYNCNKPGHLARNCKNRQKNENNENRASKTENKKEALNICEYGYSVEMQNE
MWCLDSGCTAHMSSNRNMFESVTKVEKTLHLGGIxLRIISRFFVSFILNCDNNPQSAIIIIIMLYAQSSRKNVFLFKFxD
YIILxFSDPRGGIHPPDPPPIYATMFESVTKVEKTLHLANNNTTSVNGIGDINIEVRNKQQKKEIILKEVLHVSDLRQNL
LSVSKMTDKGYEVHFRKNEAIIMKNNKVWLSAKRYGNLYYLNTEKQQANNVVNSNVKEIDLWHYRMGHLNENDLKGMAIK
GKVHGMKLNREEKLSECEICLSEKLTAKSYPSAKEKRTKDLLEIVHSDVCGPMRTESISGYKYIATFTDDYSRYCKIYFL
KRKNEVFEAFQTYKSFVENFTGKTIKTLQSDNGLEYRNRAFDDFLEKHGIGRRLSVPHTPQQNGIAERQNRTLIEMARCM
MKQSGAPPMLWAEAVNTACYIRNRCSTKGICGDIPYTYWTGKVPTVLYLRIFGTKAYALVKGTNKGKFESRSQECILVGY
AEESKAYRLYVPGARSIITSSDVKFLSTAGFKSDYQEFYEDELQVDIGTGIAGIELQQQQESGSSSDAESEDQPQPQRFG
KGRPRSVRTGQRGRPRKIYQQAAKEGNESSQEDSMGSSSQETFEECEMAFAMDADDPTTIDDAKSSTDGIGWIRAAEDEF
LAQVLNNTWQVVERPSNRQIIGNKMVFRTKDDGTSKGKKKVRLVAKGYAQKPGEDFYESYSPVARFTSVRLLAALAAQSD
MEIHQMDVVTAYLNGELEEDVYMNIPEGFNEFMEKLASRVPIGSNQKNPEAKYVKEAKQWIQAVKRMKNPVCLIKKALYG
LRQSGLRWYQKLTTKLKEIGLEPTEQDPCMFIKKEEKKILLVTIYVDDLLLTSNNPKWLQQIKSHLSAEFQMKDIGRVKM
CLGMEFQQDLQKHCVFISQAKYIDTILKRFGMTECKPALTPIEAKSNLKRPEAFDENEMKRYPYQSLIGTLMFLAVTTRP
DIAYAVNFLSQFNSSYNEEHWRAAKRVLRYLNGTKELGLLYSKNEEDLYGVVDADWGANMTDRRSYSGQAFILAGATISW
EARKQRTVALSSTESEYLAMSEAVKEALYLKSLLERIGRKGRPIRIYNDNQSAQKLVKGFGFHPRTKHIDVRHHFIQEKH
KSGDIEIEYMPTEQMPADVLTKGLSSSKHRDCISSLGVTVFN
>Copia-8_PIT#LTR/Copia 55-4477 via tfasty with Copia-15_CQ, 58.8% SW:1169, 1 frameshift and 1 stopcodon. [Phytophthora infestans]
MERRTPPTPAQGESATTEQDEASELLRLLRGVAGRLDKLEKSQVKLEKRLETPKQDPKSMVDTSLFAWALGRGSRMHIDS
LSGTPQTQAPRRPTVHPQYFGLRHADVGVHETGMSELQRLFAEEHAAQANQEAQQPPAAPVPAQAQATPVQNQGWAFRYP
DARQKKLAIRPFDGKELCVGLGSGFLAWGRRFERQVALGQSTCGFAWSEDVKVDLLGHYLSGTAERYYNKQVDTWWNQLP
TLQYVMERMLDAFKTNITPAQAMKLFTAPKDTKRSWPEHYMYLVAISKATGGGADYLALSNIVQYASAELRTVLMAKVDQ
SRTDFLHYAEELAHFAQSWETDATKQKSLGRETVNVVKDHTKQRKETRSCHECGRVGHLRAACPDLKKPGDITLAVGEHT
SDTTDLWILDSGSSRHLVNDESFLKDVKECSDECVQPNGEPLHITKRGNVLLCVTACGEEQMVELTNVYFAKGVVHNLIS
YGMFDKRGFELTHRAGRRVVAAKNGGRVAFDVEMRSNVLVVPAVVEPRRELPSNVIMAAxSRELTESAEVPRDVQQGTLL
GFHKRLAHLNYDAVELLAKDPSSGIHLTDRKRVNCLTCAEGKQTKNRRSKKDTGTHSPIDRVGGVICSDLKGPMTPKDRL
GNRYMINFIDFKSNYCRVFLARTKDAAAKLFEHFLVYFEKAFNCKIHVLRTDSGGEYENVDLFCKRTGVTRQRSEARNQS
SNGKAERMHRTIMNMARCMIFACGLPLRFWGDAVQYAAYILNRAPTNSNPGRASPLKELTGKTPPLGEIVVFGSPCTVYR
DPRKKNFAQRAQKAMIVGIGEETKGYRVYLPKDHVVVTTQHVKNIETLDKKQNLQVQRLYLQAGETLEGSEPADNGAQAL
EAGAPNVKGKKKRTSTKKKKSWSRERHVTRSVAKNARVTANETAQSQETTRNVVNSVVEYDPKSYQEAMRSKHKDKWLAA
MADELHALEGDGVWRIVRKPEGCHVLNTKWVFKTKVDAEGAIERLKARLVACGNEQQFGIDYSVTFSAVIEMSSVKLIFV
LARKWRVPAKHGDVPNAYVKAVKEPELDIYLRIPREMVVPKELRCLLGVSSDNELVLELKKTLYGLKQAGRLWNQLPTDA
KDIGFSQSLTDMCVYYRSCEGTLLVVGVYVDDLLVTGTQQKAVDAFFSELSMLAIKDLGLANKFLGIRVVYDEETGYDLD
QELAIKEMLREHGMSSVHGVRTPIGAESNDVDETADVLLPLTGGDNEITIRKFQSLVGSLMWVARCTRPDIAYAVHKVSR
RTHSPTMSDWKLGKRIARYLAGSMTLRLSMKGNCPLEEPLNVVAYSDADFAADKSDRKSVTGGLLSVDGMPVSWVCRKQT
GVSLSTMEAEFTAASVMATELLGMRELLNELGVAFNSPMSLRVDNQAALKQLDGEESSSKAKHIDVRVKFVSSYTKNGVL
KPEYLQSEEMPADILTKALEAPRLVELRTVVGLH
>Copia-9_PSo#LTR/Copia 15-4407 via tfasty with Copia-12_PR, 67.1% SW:2503, 2 frameshifts and 2 stopcodons. [Phytophthora sojae]
MSPNTLGPNDVLREDNYFLWEFNCRMALARKDLLDHVEMKPEDAGKWETETWKAADFKALAVISKLLSPVYQPMIRESKS
AKDAWETLREFFVRQNLHNRVQLRKQLHEFQMASGADLMGHLLKFDDLCLRLSAVGDQLSDDEKLVILLGSLSSxYDAMV
KIIEAHSSVTLMDAKEMLRRESETLKKREKQEEAFNVSARGGNGSTRRRNNAGSRGTQASQHGHGGGRHGSRRGGGQQRQ
PRGGRGASRFDGRCFECNQFGHKRAECPTLSKKDDGDEFVFAATREASMAWLLDSGASTHMTHSRQDFVEFRxLQSPTDI
VVASGQRLRAMGVGTVRFLIGGGRLIKVTEVLYVPDLDRRLLSIPSLVAKGASVEFSGNGCTISFEGRLVARVEKVGKLF
VWNVVATTDEERGKDVAASAELSPGSLWHERLGHVSKKKMMLVSRAAEGVPSFGQDDDVPVDVPCAGCSCGKMTVSPFAR
QSGSSVKTAGLLDLVHSDVMGPMKPQSKGGARFVVTFVDDYSRYVHMYLIKAKSEVFARLVEYKALVEAQTGRRIRCLRS
DNGGESVNKKFGDFFAAHGIVHQTSTLHTPQQNGLAERMNRTLVEMARSMLYHRGMAREWWGEALSTAVYLTNRVPNTAR
PQTTPHEVFAGHKPDLSYLRVFGPRGYVHVDKSRRSKWDARAHACIFLEYAPGSKAYRVWDAKDERIVTTRTITLNERPA
DNYRTVVHVTRQAPLQFDEDVSTSQQPQQPVLPATDNSGDVEMTEVDGDPVDMEVDAVPDALVRRGEGEMSRRGGEALEI
PVSEPSSNVTAARQLTSQSSLRQSALIPSSMRTGETSLSDRLVFGPTRPRQVRISAPHQPRLLTSAQEARTPSLPALPPS
EGNRETGEAERLLLENGETDPTSGQDATGDGYTSDGSIGEPDSKRPRIDDEYEIALAASERIPNSFREAMRSADSDKWKE
ACRAEIRAHVRNHTWDLVYRPPGVRVIGHKWVFALKRDEHGNIIRYKARLVALGCFQTYGVDYTSTYSPVASLNTVRIFL
AVCCQLGYMVNQYDVETAFLNGDLEEELYMVPPECLNVCEGMMCRLRRSLYGLKQAAAVWHKTIRSVFIALGFKQCKSDP
CLFVRVRHNGPVFIVLYVDDLLIGCAAEEEASSIAEALGARFSLKSLGDARFILGIELRYITQRGELFVCQAQYISRIIE
RFGQAEAHPVRNPSVVGQNLRASDEHARMNEKKPFRELVGSLLYVANATWPDICVAVSILSQHLEDPREMHWKAAVRVLR
YLKGTLATGVKYWRGTQLRLLAFSDANWGSDLSTRRSTSGVLLQPCGGPVVFKAKKQATVALSSAEAEYMALAVTVQEVM
WVRQLLGEKLVGDTCATKVFIDNKAAISMASNSGYTPRAKHIDLRVHFVRDQVEKGTIKVQHVRSAQQLADNLTKPLPTP
QFMILVKASGVVSSGDPGMQVEGEC
>Copia-9_BRa#LTR/Copia 57-4182  [Brassica rapa]
MGDIVVSKAKEGGGSSKISCPVLTETNYAVWTIRIRLVLKINKVWDLVENESDDSEKNDLATALIFQALPETLILQLGNL
ETAKEVWDAIKERYLGADLVREARLQTLASDLERLKMKDKDTIDDIAGKLTELSSKATALGEPIEEHKLIKKFMSCLPRK
KYIQLVATVEQFVDLKTAKFENIVGRFKAYEERVKDEEEEETQSKLMYASNETQPQSQHTHSTSNTSNRDQNSNFRSRGR
GNRSYNRGRGRGRYNDRYQDRYQDTFDMSKIMCFRCDKMGHFASVCPDRLLKLQEATETKDNDTTEAEELMVHEVVYLNE
KSVNPLIFETSKDNDKVWYLDNGASNHMTGDRRYFKSIDETITGKVRFGDDSRIDIKGKGPILFYTRDGSKRILADVYYI
PDLKSNIISLGQATECGCDVRMKDDYLTLKDREGKLIAEAKRSRNRLYKVNIERDDRCLVASASNESTTWHARLGHIGRE
AIRLMASKELVYGLPKIVSDKETCSSCILGKQARHAFPKSTSYRADTVLKLIHGDLCGPITPPTSSQKRYIFVLIDDHSR
YMWTVLLRDKGEAFDKFKKFQAIVEKESEATIKTLRTDRGGEFTSNEFNSYCEEHGILRHLTAPYTPQQNGVVERRNRTL
LNMTRSILRHMELPNYLWGEAVRHATYIINRAASRVINAKTPYELFKGKKPYIGHLRIFGCIGFAKVESQHLKKLDNRSK
MLVHLGIEPGSKAYRLFDPTSKRVMVSRDVIFDESKGWTWTTSNKADTSGSFHVNIGQYGNHGIDENITTPSPEETAATL
EPNTIMEDEEDEEDNGDDDDEAEPVLRRSQRERKQPGYLDDYILLAELEGERLLLSINDEPWSYQEAIEKEEWRDACQDE
IKSIEKNRTWDLVELPAGAKAIGLKWIFKIKRNSDGSINKFKARLVAKGYIQRHGIDFDEVFAPVARIETVRFLLALAAA
KGWQVHHLDVKTAFLHGDLKEEVYVSQPEGFIVDGQKNKVYKLRKALYGLRQAPRAWNEKLNKVLSELRFERCSKEPALY
RRVDKEHLLLVAVYVDDLLVTGSSLEMIKEFKKGMATKFEMSDLGKLTYYLGIEVDQHSEGITLRQERYAKKILEEAGMQ
ACNAVHVPFDPSLKLSKAHEETSVDEKDYRRTIGCLRYLLHTRPDLSFAVGVMSRYMQAPKISHAAAIKQILRYLKGSLS
YGLTFKRAAEVRLVGYSDASHNVDEDDGRSTTGHVFYLLNLPITWSSQKQETVALSSCEAEFMAATEAAKQAIWLQDLLA
EVIGKKSEKVVLLIDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVDNNQIEVQHVPGNEQRADILTKGLGRIRYKEMRS
MIGVEDLETSSLRGRM
>Copia-7_TA_p3#LTR/Copia 6464-7828 68.2% sim to Maximus_p3, SW:190, [Triticum aestivum]
MSVGESLGSHSLHSFAEFLQQHINSPEASSCLTSKRKPLKPLNVLKPFSLNFMAAEKLVRNGGRQRRGGTSKDLPDDLAE
IYKTDPEEGYNQRKTRIQWIRRYWAEQWFNYKFVTQEYAEKNAIKSPWGDILYRGLPPKNRTEAVAHDFYPCMVRGPQPE
NADPSSLLWCRDDNIFKRNFQHAKASAKENKKSLGLDFNPGPSAPRADGSRDAEPNVIGPFSNLDGLITYIFVQGARVDH
SDNDVDTDEAPAPPPRPQKPKKTKASQSAAPPKASRVKPLATAPPEDSVQSEDLSRISKKTEKKKKIVKNTDHTLTPAAI
LREEHVDLSSDDELADDALEQLIKSKEEAEIFNNLPLFDVAIIHNFIDEWFDTPNLSFDDLQLPIGLSVSFNGAIASELA
IAQRIIELKHKIDYEKAQFKKHVAMLSVQDVKNFKIMLHELKEAFHKKHEEARGS
>Copia-7_ES#LTR/Copia 49-5411 via tfasty with Copia-3_DEu, 51.5% SW:869, 2 frameshifts. [Ectocarpus siliculosus]
MSASDSGSVAGLGEETSATQQQHAEDPAIARLEGQLSQLMSVVMELKRKEPGDAVAGDASRGGGAAVPSQREALPPGGGG
AFSQETARDGRNHPRESSWDNIPGASPGVPARVTTGWAGRSGANPVGPAGMSPGVGPDRGEARGLNPQGEQTAIRGARAF
FDGYSSSSQKRVTVNAPRLEGESRGHGYDSWRKALIQAAKTVGLDGQLIGNAEKHAPVGDPNRPSSELYSLGYTSDEVQR
GLQAFHFVTTAIVREADKAIVNKCETAKEILAELDKVHNPESQGSKQALMKKMFRFTIPAHSNSNPVEHLYTLELLYSRL
REKGVNADTPFVLAHFVDALPPEYQQAKFLLETATNLDRGEIIRVSVPCTRASRRGGGPRRASGRRSMLSSRATVATGAE
RPAAAAAATARAAAAVAARRGKGVVARAVVVATAAEAAAVQVAWHGRCFRCGEKGHQAAACTKPEPLRCEKCLGYGHDKS
KCSSEQAVLAVELPVLDATALDVAEEALVVRDFTGEWNRVVDRGGVEQARQERFVADTGATNHMFPSANAFENYHECDRR
LSVAAGKQAFAIVGYGDVRVSIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLRQTKGRLAADERELEVFVGGGESVYFP
LWGDLFVQTGHRIESGRELACAMIAPGNAKANRTPVDINDFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGL
SKPIPNRTSTRAVKELQRVFVDLSGKARVQSLGGKWYTLIVRDDCTRWNRVYFLKNKSDAAEAFERYLAENRADGAPSEV
MVVRSDNGGEFFEGEFGKLCRKYCIKQEFTPAYSPEYNGVAERALGLIKDAALAARIQATILYPEAPSYPSLWAKATAWA
CNALNCTSTTSNPDKKSPYEMWHGHPPPPEATYPFLKPAVYKVKRTHKSEPKAKKCFYLGPGINTNRDCVRILNEKRQAI
TTRNFTWQSVPAAPTAHPQPLPPIAEEDEELTTGEHEGGGGASCHGGGRAEGEPEDGGFHLDTTANPGPAEPPARDAPAA
PPAAPQESGVGDAGDGAPSSREGASVAPSTTSTGMADVGGGEDDRRSSSSSSSSSRGGGGSSSSSGSSSSSSSSSSSGGG
SDSGSDTDIPALRGPEERRLARFGEPAELTSRRLRENPRRNTRYESSTSAEGLLARHASAAGLPTLPITSTEEYTHWMLA
CVVDVVEGLEARAVQALLCERAEEANIARQEAEDFLLGAEDLVLNSPDAFVRALASTELSTESPIGKRPSDVESPPMTVA
GVAKSVYREGWEQAMREEFDGHLDTGTFSFVDGTPEGRRPVSSKWRFTWKTNKEGKIEKFKARLVARGFSQIPNVDYFYS
SSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAAD
TLVENGFEQCKADPCVFRKMKDGVVVMIIVIYVDDILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGT
LRISQTAYIDSIVNRFDVQSTSPIPASPGADVGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAE
RHWKAIRKILAYLKETRDLGITYKRGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYI
AAGEGVKEALFVRAVLSFIAPETSGGSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQH
ADMLTKALSKSNLQYHRKKLMNLPELL
>Copia-6_SI#LTR/Copia 125-4059 via tfasty with Copia-23_SI, 81.1% SW:3751, 1 frameshift. [Solenopsis invicta]
MEFHGIEKLRGAENWNTWKFTVRNLLRGTEDAYEVCTGEIEKPKSLEATASAEQRVMYQTNLKIWDKADRAASQIIVKTL
ETKVTTLLVMCECARDMWLKLHAVFEQQTKQAAHTVQSEFFGFNKNQSDDMVSHIAKFENLVLRMQQLNVRPDESSVMVK
LLDSLPDDYESLRQAWWARPEEQQTLTNLIEILTSDDKRRQQRMDKQEEMVALVAKVQGKNECDKMQRDGKKRQSKKPVE
STVVKGKNKFTQYKCHNCGGIGHFRKNCPSKKQKQKDDDEAFVCEILNTELDDSWIVDSGATDHITHRGEWFSTFEYFKT
AEIIHIGNKSTMDALGKGTIKFEALVSGKWLSCRMENVLYVPDARRNLFSVTSALDRGMAFKSSKNGCEFTKNGIVKAQG
VRVGQLFKMEIRIKPPKTSCVKEVNLSSRDSLRIWHERLGHQNMYHVKKILRKHDIEFKDDGQFCGACVEGKQHRNTFKE
RQQRANEPGEIIHADLCGPMECTSLGGAKYFVCFTCDYSRLRIVYFLKEKSETAGKIAEVLQIIKTNFGRPMKTLLCDGG
TEFKNSKVQELLSSNGVTLVVSNPHTPQQNGCAERTNRTVVDIARTMLLAKNLPKHLWAEAVNSAVYILNRTGPSSLDGK
TPYELFTGKSVHLNKFHTFGTGCFVHVPKVQRKKWDAKGQHGILVGYSDNIDGFRIWLKSRSKIIRSRDVVFEPEINGGL
ISFISVDTNIEPEANDQKKCIEDVNIDSSDSSSNSSNDSAEDSALDPKENLIPETPKRDLRDRNKLNPPKRLIEIMLAEM
DEPRNYTEATKSEECHHWKAAMEDELASLEENSAWSLVELPTGCRSISNRWVYRIKRDAEGKVSRYKARLVARGFSQREG
IDYNDTFSPVARFDTIRAILSIAANEQLEIAQFDVKTAFLNGIVKEDIFMDQPQGYEDGTNRVCKLHKSLYGLKQSPRCW
NKRFKNVSTNFGLQESSADPCLFYRIIGNEKLIVVLYVDDGLVVATKQTDIQEFLIRLKSEFKITVETVGCFLNVLINRF
EDGSISISQKTYAESILRRFNMEEARFVSTPMEKCHQAEEVIDTKITSAPYREAVGCLMYLAICTRPDITYAVNYVSQFL
EKPEERHWTMVKRIMRYIKGSLTLGVYYDAHAKGGKLKIYSDADYASDSNTRRSVSGIACNYSGGVILWASRRQQSVSLS
TTEAEYVAASEAAKDAVWLNQLYKEISPLETAPVLYVDNVSAIKLTKNPSFHKRSKHIDVRFHYVRERVQEGQLKIEYVP
SKEQAADILTKVIPRIQFERLRKMLGMTNIDR
>Copia-7_MLP#LTR/Copia 214-4527 via tfasty with Copia-6_SMo, 64.6% SW:1506, 1 stopcodon. [Melampsora larici-populina]
MPQESSDSRTFGEPIQKFSQIMTNALSKYKVSDDLTDDNYIEWSQSLMEVFRSLELHYYVKVKDHVNPNLTAEEVEKTRF
NITTYILGRLDSSNKLRVRNKLTDPLDPTELIYDPYECWTYLKDFHHRISEDKLETITRSLYSCQISRSDTLTGFVDKFE
NLIRDFYRLKGELSDAQSARMLLGAIPSLTVETKEYIHNTVVPLTRDGVGRYLRKFEEHHGWTTSAVREVHSVTVKSSKK
ECTPDECFGPHMAKNCWSKPENADKRSAFLAKIRGKSSTGSSNSTSQPQATSTIRGVKNVYDSNVNSASASMAFLSLNVE
FVEIETSNKSTPEEIYSAPSEFEEDPDVSASVSAVLSTSSDWALHDTGATHHMFKDVKYFDQSSLIKIEDASKRLKLAGG
DISLAVHSRGIAKLLAGDDTVFELKNSLYVPELSRNLVAGGLLKKQGVREIFHDSKNFSLVINDLAVFNGFISDNNLMFI
LLQPVSLGASSSVSASITEISSLLQHRRLGHVSSKYLKLMAKLDSVEEFSYSDETLNCDTCSLSKNTKLSFNKSRPRARN
FLENVHVDLSGIIRTTGLNNENYFVLFCDDYSLYQHIYPLNGKTKEEVYDVFMAYLAVAERQTGCSLKQFTLDRGSEFLN
NLLGQKLKELGITLHLTSGHTPEENGVSERGMRIVNTRARSMMLGSSLPIRFWYYACSTAVFLTNRCVTASLESGKTPFE
MWYFRKPSVQHLRVFGCQAFGLIRKELRDSKFSPVSSEGVLVGFHQDNFNYQIFDLSTKKVYTTHHATFNEDIFPFSEVP
AISSNLNSTLDRRTVKVQFFDEDSESEDIPEDANPVEESLSRLDDQRTNLDVSSSVPPAPRRSTRTSKKQHNSLKGMCSI
AVFECDFVTGSFFAAFPPEANLGDLHPIPDPKSYKRAMESSESDLWRAACDKEFKSLKDKDVWVLVDRPSDKNVIRGMWI
FRKKQLVSGGVKYKARFVAMGNTQIPGQDYGETFAPTGKPVSLRILIAFAAIMGWEVHQMDAVTAFLNGDLDEELYVEVP
EGYRTKSSAGKVWRMKKALYCFKQSPKIWQDDVEEFLIEIGFVQCEIDHCIYIRAKNDLFTAVYVHVDDLAITGNDISTF
KIEISAKWEMEDLGIAHTVVGIQIDRIDKFTYSMSQQQYALTVLSRFGMVDAKPAITPLAPNVKILKSTDEEAHEFSLTK
LPYRSVVGSLMYLAQCTRPDLAHSVGVLSQHLERPGKLHWEAAMHVLRYLSHTVNIGIVFSGISTNHVEGQRSFECPLSH
CDADWAGDANTRRSTTGYVFVLAGGPISWRSRLQPTVALSSTEAEYCAITEAGQELLWLRNMMARFGFTDPNPTVLQSDN
LGAIHLTSKSIFHARTKHIEIHYHWIREVVKKGDMVIKHCPTHLMVADLLTKQLPKEQFSTLRKSLGLRFLAxMLFEG
>Copia-7_ST#LTR/Copia 109-4367 via tfasty with Copia-6_ST, 76.1% SW:3871, 2 frameshifts and 5 stopcodons. [Solanum tuberosum]
MAPNSADSQGQATSTNGGAVAVIDHNHPLFLHSSDVSGIQIISFQLTGVENYSVWFRSMKIALLGRNKLGMVDGSCKKEM
FPGLEGNWERVNAIVLSWIMNYVSKSLLGGIMYASSAKVVWDDLFERFNKVDGSRTFNLHKEIATLSQGTSSVSVYYSKL
KGLWGEFEALVPIPGCSCEGSKEYSVHHQKLKLFQFLMGLNDSYLQARSQILMLKPVPRVNQVYSMILRDESQRSVVTNA
GVLGTGPASLQRSFDAVMYSRTSGTQNRFKKGYNLVCDFCKIKGHTRENCYKIIGYPQDFKLKKKGVSSSAYNVTGEYED
GLRLRSDDGVRSNASDAGNGQLRCDGEVKLPHQNQLESCTLTREQYNQVLQFLDKKSEVSHCVNAAGTNPTSRSxSHSSG
WIIDTGATNHVVVDLSLLKNQSISKVENPKKVHLPNGDxALVTHLGSSALDGKNTVSRVFYIPQFKFNLLSVAKLTKELN
CSASFFPDFCLVQELFSGKVKMIGKEDGGLYILSNRIDKEDDVVLSARYSEHSDRQTEKIDIQLLHKRLGHSSSSKLKKL
LNTSLEDITKYISKCTVCPCAKQARMSFSISTSRSLSTFDFLHMDLWGPYKKPTFDGFKYFLTIVDDYSRMTxVFLLRMK
SYVCTMLKTYLTYIKTQFNKQVKVIRSDNGTEFVNTNCSELFKELGIIHQTSCAYTPQKPSLHQLRVLxCLCFAKRVNEL
DKLKPRSTTCVFLGYAETQKGYVVYDLANNVFSVNMDVVFQEDVFPFKLKSKDSVPIFTYTGINHEVDDLKEVSIATCSQ
HNSQVELLPQEQVENAEVEASTNLQQTNVYEDIQAEQISQTEVRKSGRGTKPPLWLKDFVSLNIHEGPYSLDKYVSYNNV
NPTYQAYLAKMSSVTEPQSYKEAASDAKWTEAMNVEIKALQDNHTWEVVELPDGKTPIGCRWIFKVKYKSNGEVERFKAR
LVAKGYSQKEGIDYQETFSPVVKMKTVRTVLAIAAQQHWQIHQMDVFNAFLQGDLPGEIYMQLPQGFESQGENKVCKLTK
SLYGLKQPPRQWNAKLSEALLRFGFKQSENDHSLFIKQTSIGSVFVFIYVDDMLITGSSVQLIEETKAKLNQTFKMKDLG
ELRFFLGIEFARSSKGILMHQRKYALELISETELGNAKPAVTPIDNNNKLSSRQYDDHFNSENVQEDPPADQSLYQRLIG
KLLYLTMTRPDIAFGVQTLSQFLQQPKKTHMEAALRIVRYIKGQPGQGILLSSIQDTNLTVFCDADxASCPLTRKSVTGY
FIKFGNSVVSWKSKKQSTVSKSSAEAEYRSIATTVTEIIWMLGLLKDLGIEMHKPVGTDSKAAILLAANPVYHERTKHIE
IDCHFIREKIVQGIICTKYTPTHEQPADMLTKGLTKIQHQLLSSKLGVQNIFSLPSLRG
>Copia-7_SI#LTR/Copia 80-3968 via tfasty with Copia16-NVi, 67.1% SW:1967, 1 frameshift. [Solenopsis invicta]
MATNNQDDVIQIEKLKDSENFMIWKFQVTIVFKSLGLYDIVTGVLALAEGMTEQAKAEWIRKDARAQKIIITSIEKQPLT
HVLVCKTSQEMFQRICAMYERDTEQQKCILLQEFFNFSYQKGTDIATHVSKLENLAYRLKVLNADIDDSMLMSKILVTLP
PEKYKHFACAWESTAQDQTTLSNLTSRLLSEENRLSVTDARQDAVAFKATEKKCHKCNNTGHLARACKVNKGNIQDMRCF
KCNGRGHIAKFCKKEDATGGTTKCNICKKFNHEEKDCYFRKNKTDDQTSTKDKVTFLASNCKTNKWILDSGSSSHITNDK
NMFKNMRKIESEIGTAKKSQILKAEGIGTVETDKCVLNKVLYVKDLSKNLLSVNEITKNGGKVIFTKEKAEIWKDNIKLI
GFRNGDGLWTVNLNQESMDSALLTRENKMAIQWHQKLGHLGKENMKKLQNISEGMKITDKSLDVLNNVCETCLKAKQTRI
PFGEKRTRAKRPLEIVHTDVCGPIDPITWDKKKYMITFIDDFTHFVMVYLIEGKYEVAGTVKEYANQVETKWNLKISKLR
CDNGREYVNEELKIWCRRRGTILDVTTPYTPQLNGKAERMNRTLIEKTRALLTDAQIDKSFWGEAVRTAAYLTNRSPTDA
VKGTPLENWTSQKPDLTRLHIFGCNAYTKTLTPLKKLDDRCKSYIFVGYAPNGYRLYDEERRKIVISRDVKFKEEITSKN
KSAKINIHAEEEQTEKQEEIENNMENISGSEEEYQDADLEIEEEESQEETQEDTQEEQEELGRGKRKRKIPDRYKDYVYL
TYREATTGPDKENWKKAIEEEKKSLEENNTWKTVDRTEAKSKKILSNKWVFKIKDDGRYKARLVVRGCEQRHGIDYEETF
SPVVNSSSLRTLLAIATKRRDYIVKFDIKTAFLYGNLDEEIFMELPDGYNCNNKICRLNKALYGLKQASLRWNQRFTTFL
KTKGLKPTKAEPCIYRTDDNTLILAIYVDDGLIIGQNRQSIDKLLSNLGKEFHISVFKDIKSFLGIEIQQDKEGLKLLQL
NYADHVVKMFNMKNSKPVNTPILTNDDRSEEINEVFPYRESVGSILYLSSKTRPDLAYAAGYASRHLDKPYKQDVANIKR
ILRYINATKNLGISYKVNNDKNKEELIGYTDSDYAGDVETRKSTTGFVIMYCNGPISWCSKKQSVVALSSTEAEYIAATE
CCKEILYLKFLIEELTGKSVKATLNIDNQSTIHLIKNGIGNKRSKHIDIRYRFINEKVAEGLISVNYCSTDTQLADIFTK
ALGQNKFEIHKKRLLN
>Copia-9_SB#LTR/Copia 42-4404 via tfasty with SC-8, 1 frameshift and 1 stopcodon. [Sorghum bicolor]
PAMAESAGRNGGGEGGERQLQPAPPQVEVRVVKEFGGSGSWPMLTRTNYGEWATQMKWKLRARKWWRAIEEDDRTEDAQV
GVMEALMASTPAEYHEALGAKDTAKQAWEMLESLRIGSDRAKRARIQLLRRELNDIKFKPGESVEDFTLRLQSLATQLAT
YGKKVDDEDLVTKLLCTVPARYSQLAMSIETMLDISTLSLEDVAGRLRVAESRTTPAPEKEKPKLLLTEEEWSARMKEKR
RSGEGSSHGGDDRGGGKQQSKGPADKKKGKKKFTDPNACRKCGKVGHWARECPERKEKKDEAHLAQDDSDGVHALLMGVY
CAEQSGREEVLEAEQSPASLAIHRFDEPRAQVHLGVAGDESEQRWYLDSGASNHMTGCRAAFSELDEKHAGSVRFGDGSQ
VEIRGRGTVLFRCKNGEHRVLSEVYYIPELRSSIISLGQLDEHGAEVLIRGGVLRIRDQDGRLLAEVKRSRNRLYLLDLK
IEQPVCLAAACTEKPWLWHGRFGHLNFDALGRLGKMVDGLPEIRHAGELCDSCLAGKQRRLPFPKAAKRRAEDLLELVHG
DLCGPITPATHGGRRYFLLLVDDCSRYMWLQLLTSKAEAADAIRRFKARVEVESGKKLKVLRTDRGGEFTAIEFATYCAE
EGVGRHLTAPYSPQQNGVVERRNQTIVGMARSMMKAKKMPGAFWGEAVSTAVFVLNRAPTKALKGQTPFEAWHGRKPNVS
FMRTFGCIGHVRTTKPGLHKLEDRSTKAVFLGYEDGSKAYRLYDPTGGKVMVSRDVVFDEAAAWRWEEETVLGEASEGGG
INDSFDVEHLVIQGHGAAAEQSPEPAAGRGVESPVAAEEPPSPGRTGHLDTPGPAWEEFPGSPEQRTPAAATVEYASPPS
NVSDFVDAFHEGEEVRFRRVDNVVGEAAVPGLADRLLDDGAHTLLLMSAEEPGTFAAAERDGAWRRAMLEEMKSIEDNCT
WELVDPPAGCRPIGLKWVYKVKRDERGAIVKHKARLVARGFVQREGVDFEEVFAPVARMESVRLLLALAAAKDWQVHHLD
VKSAFLNGDLAEVVFAKQPPGFVQAGQEQKVLRLRKALYGLRQAPRTWNAKLDATMTELGFTRCASEHALYTRRRGKEHL
IVGVYVDDLIITGARASDIARFKEEMASQFKMSDLGSLSYYLGIEVRQGADSIKLGQRAYVLKLLERAGMVGCKPVATPM
EERVKLSKQSTAEKVDATLYRSIVGGLRWLTHTRPDNAFAVGYVSRFMEDPREDHWAAVKRLLRYVQGSAEMGLIFPKHG
GLRLSVFSEAPPRTGEAELVAYSDADMAGDVDGRRSTSGVLVFLGTAPVAxQSLKQKMVALSTCEAEYVAAATAACQVVW
LRRLLSELTGSKAQAPALKMDNQPAIALAKNPVLHDRSKHIDVKFHFLRDCVDGGQLVIDFVETDRQLADILTKSLGKLR
FQELTKMIGMVEVK
>Copia-12_BRa#LTR/Copia 19-4115  [Brassica rapa]
MGDIVVAKKPEGGSSSIKCPILTSTNYTVWAIRMKTLFKVHKVWEVIESDIENNEKSNMAMALLFQSIPEALILQVGELD
TAKKMWEAIKTRHVGADRVREARLQTLMADFDRLKMKDTESIDEFVGRISEISSKSAALGEEIEEAKLVKKFLKCLPRKK
YIHIVAALEQVLDLKTTSFEDIIGRLKAYEERVFDEDDNQDDQGKLMYANMETEHTRDYNNYNNRGRGRGGRFNNRGRGR
GRFNGPRDTTNLTCFRCDKTGHVAYNCPDRLLKLQATQENENTETQEADELMMHEVVYLNEGNIVPSNYEVKDGEEDIWY
LDNGASNHMSGDHRYFSSIDDSISGKVRFGDDSCIDIKGKGSIEFIDRNGEARKITDVYFIPNLKSNIISLGQATESGCD
IRMKGEHLIMHDRDGKLITKALRSKNRLYKVHMRIRDDLSLLSTTTSDSRRWHARLGHINVDTMKSMIQRELVTGIPQFE
IEKRVCGSCLMGKQTRQTFPQSTSYRATKILELIHGDLCGPISPSTSAGNRYVLVLIDDHSRYMWTSLLKEKGETFNKFK
AFKSLVEKETGTHIQSFRTDRGGEFVSHEFNHFCNESGVKRYLTAPYTPQQNGVVERRNRTMMEMARSIMKHMGVPNYLW
GEAVRHSTYLLNRVATRALKDRTPYEMFHKKKPNISHLRIFGCIGYAKVESKLLKKLDDRSRMLVHLGTEPGSKAYRLVD
PQTRRIVVSRDVVFDESKGWNWNQTTSEKDRDGKFKITLGAFGNHGILETEQCGEEEVEPGRIEEKKADETEVIEVESES
EEDEDTVTELRVLRRSGRQSTRPRYLDDYILLSEEEGERLLMCLNDEPRSFEEAKEHKEWVCACEDEILSITRLETWTLV
DLPQGVKPIGLKWIFKLKKNSDGSINKHKARLVAKGYVQQHGVDYDEVFAPVARIETIRLLISLAAANGWEIHHLDVKTA
FLHGELLEEVYVMQPEGFEIKGSEGKVYKLHKALYGLKQAPRAWNAKLNKTLLELKFSRCLKEPSVYRKTINGDLLCVAV
YVDDLFVTGKNMRVIDNFNQEMATKFEMSDLGKLSYYLGIEVNQHEDGITLNQSRYALKILEEAGMSDCNAVQIPMDSGL
KLSKSEGEREIDATNYRKTIGCFRYLLHTRPDLSYCIGVLSRYMQSPRESHGIAIKQCLRYLKGSTSYGLTFDRSTSNMK
KLVGYSDSSHNTDLDDGRSTTGHIFYLGESPITWCSQKQDTVALSSCEAEFMAGTEAARQAIWLQDLLSEIVGTSCERVV
IRIDNQSAIALTKNPVFHGRSKHIRSRYHFIRECVEKGLIEVEHVPGTQQKADILTKALGRVKYREMRELIGMQDVVKVN
FKLKGE
>Copia-11_TMe#LTR/Copia 284-4512 via tfasty with Copia-12_TMe, 81.2% SW:4028, 1 frameshift. [Tuber melanosporum]
MSEPSSRATRASTAGEKSNGNKTSLTQSIEKLDGSMATGKSNYNAWRFRIVRILKEKALLPAVEDKATSTTQDDQAFTII
TLNIKDSQIPHIQNATTAREAWIALKKVHQGIGMNGRIILIQRLWALRMSEEDDMAQHLNEFREVAGQLRDFSAGETGIA
DSELVTILILSLPESYEPLVMALHSGRDSVTFDSMAARLLQEAGRRQIARVARGAPGCSPTSQTAFTVRGVPRKEECQSR
RGGFTGSDRERGGHGAAGRGYHAKKKTGHSSSGHGGPRVSQRKVDTRCFHCGKAGHWKRDCFKRKSEKEISGPRNESGGF
TFLARGPRHTLAREWIIDSGASQHLCGDRRQFINFEAVSSERAITIADGTKVRVEGQGNVIVITRIGEITLSEVWYVPEI
GGNLISVSRMVDAGYVVEFQKGTCIVSDGTRSTVLGYRDGSLYHVGRASQALEEVPGDSANIGLSTNQSPKATLEIWHRR
LCHRTLDSISVQDITTKVKDMEICGKPIPGRVICGICARGRQYKEPSTGIREKAEGILDIIHSDICGPMPTASXDGERYF
VTFTDEKSGRVCVTLLHSKNHALSAFQEYKARAEKIMGKPIKVLHTDGGGEYKNRQFKQCLDVAGIQHIVSPPYNPAQNG
LAERMNRTLMESARCMMQDSGLGQEFWGYAVLAAAHVHNRLPSRSHSGISPLEHWIGRKPGIGHLRIFGSTTWVLIPREK
RRKLDPKSVKCILVGYEEDSGSKTYRLYDPIRKLVVSSGDVIIDEAPSVTEQEGLMLLEVDANWNVIPVREDAPKDNIPE
GIFEPLDPVIRATESDHTDSGLRNEIHVRPQCQEEPGAGGWRCKQNADSGTQGTRKSNRNRKPVKHFRTSENIALMASSE
EREPQTLTEALNCKEREKWKKAWESEVSSLACNNTWELERLPANREAIGCRWLFKKKEDGRYKVRLVAKGYSQRAGIDYQ
ETFAPVVKFTTIRTVLALCCGNDWEIEGMDVKTAFLNSELSETVYMEIPEGLEVPNSSKVSEYNTPMACRLHKAIYGLKQ
SPRAWYGRIYEFLRTHGFRRSDFDHSLFIXEKKRVVLLLYVDDLLLATPNRAMMQWIQGILESEFEMTNLGVLKSFLGLE
IERNRRARTLHLSQSKYVDRILLAHGMSNFNPASSPADPAVRLKRSDEGINATAADVQSYQSAVGSLMYVMLGSRPDIAY
AVGKVSQYATNPEAVHWTAVKRIFRYLAGTPNRGLYYKANKKGIGFTDADWGSGDDRRSMGGYAFLLCAAAVSWNSRKQT
TVALSSTEAEYMALTQGVKESIWLQGLLHDVGAWTYEAEVREIAVDNQGAIAXAKNPEFHARTKHIDIQYHFVRQHVETA
KVQLTYCPAEQMTADIFTKALPLPAFQRHCLGLGIADQAVVFEGGERLEH
>Copia-12_EPa#LTR/Copia 30-4271 via tfasty with ATCopia8B, 84.5% SW:4658, 2 frameshifts and 2 stopcodons. [Eutrema parvulum]
METYSVPSLNISNSVTITLTERNYLLWKSQFECFLLGQGFLGFVTGVTPQPSATLTITSLTGSGSQTPNPYFSTWCKTDQ
VVKSWLLGSFAEDILTLVVDCNSAQDVWFSLAKHFNRVSSSRLFELQRRLQTITKGEQSMTDYLKEIKNLCSQLASVGNP
VRERMKIFAALHGLGREYEPIKTSIEGSMDSYPATSFEDVAPRLSGYDDRLQSYISDTSVSPHLAFSLSRMNEPSGYYYS
NNRGRGNNSGRFSRGRNSFSTTGRGFHQQITSRSSEDEHIPVCQICGKTGHKALNCWHRFNHSYHEDQTAVALAAMRITD
ITEQGGAEWYPDSGTSSHITNAPHNLQQVQPYTGSDSVMVGNGEFLPITHTGSAFIASTSGTLPLNDVLVCPNITKSLLS
VSKLTHDYPCSIKFDRNTVRVHDKATKKLLKLGSHRDGLYLLEDQNFQALYSSQQQAASEDIWHKRLGHPHMDLLHKLSA
AKIISLNKGPRSVCESCRLGKSSRLPFSAFSFTATRPLEKIHCDLWGPSPITYVQGFIYYAVFIDHYSRFCWLYPLKLKS
DFFTIFITYQKLVENQFNRRIGNFQCDGGGEFVSNRFINPLQQCGIQQSISCPHTPQQNSLAERKHRHIIELGLSMMFEG
KFWVEAFFTANFLINLMSCSTLNDQVSPYEKLHELPPDYSALRTFGCACYPTLxDYAANKFDPRSLKCVFLGYNAHYKGY
RCLYPPTGRVYISRHVIFDENNFPFQNVYASLQPHQVTSLIAAWQKSCISPLPNDVSPSTETRQPRVSPSSIPSSSPVTV
HPSSAQNRESPTRASAMSNRDETSTTxSTEYSERTSRFDPVSIGDSAQLDSGGTEASPQLSPAPSPPPAAPIPSGYPMIT
RSKTGVHKPNARYALLTHKAAYPEPKTVTAALKDAGWTGAMTEEIDNCHITRTWSLVSHTPDLNVLGSKWVFRTKLNADG
SLHKLKARLVAQGFTQEEGIDYLETYSPVVRSATVRVVLHVATIMNWTIKQTDVQNAFLHGDLLETVYMAQPAGFVDPTK
PNHVCKLHKSLYGLKKSPRPWFDKLSLFLLEFGFICSIPDPSLFVYTKNINVIMLLLYVDDMLITGNNSSVLDDLFNALK
QQFRMKDMGQLHYFLGIQAQPHSERLFLSQQKYAAIAAMSNCSLMPTPLPLQPNRVPDQLEPFSNPTYFCSLAGKLQYLT
LTRPDIQFAVNFICQKMHAPTVSDFQLLKRILRYIKGTIRMGISFMKGSDCCLRAYSDSDWTGCPTTRRSTGGFCTFLGQ
NLISWSSKKQETVAKSSTEGSLSETAGEITWLKSVLKELGIPLHVTSELFCDNLSAVYLTANPAFHARTKHFGVHFHYVR
EQVALGSLLVHHISGTLQITYIFTKSLPYTVFASLRYKLGVDVPPTPSLRGANN
>Copia-13_CQ#LTR/Copia 120-4141 via tfasty with Copia1_AG, 1 frameshift. [Culex quinquefasciatus]
MADAKVQVEKLNDENYVMWKFKMELLLFKEGLTSTVTQNKPANPDAAWLKKDGDAKVAIGLAVENDQLVHICRKTTSKEM
WDALQEIHGESNYSNTLHVLRKLCSLRLREGGNLPEHLKEMTAMANHLEMNGEGLKETTFVGLIISSLPPSYGSLINVIE
NLPKAEIKLDNIKGKLRDEWRRRRDCSEDEQLHEKALKSSVGGSSKATDKKKTKKAGACHNCGAVGHWKRDCPKLSKATS
GSPKANLAVERPAGMEMCLAVSGECSPNRWYLDSGATSHMTSNTSLLNNVDASKQPDICLADGTRIKSSGAGTGKLISVT
GSGIRMSVTLADVYHVPSLAGNLLSVSRMCDLGYAVCFDKVGCKVMRGEEIVLVGERSGGLYRLKEFPERALVSKTEHPA
LCEHMWHRRLGHRDPDAVSKIVREDLGFGLKMEKCAVKCVCEVCLKGKMSRDSFPKQSQSKSSAVGDLIHTDVGGPMEEA
TPSGNRFYVIFVDDYSCYTVLCLLKKKSEVEAKIREYCSLMKNQFGYYPKVIRSDGGGEYSSGTLKKYLAENGVVLQQTA
PYSPQQNGKAERKNRYVVEMARCLLVESNLGKKYWGEAISTANYLQNRLPTSTVERTPYELWHGKKPSYTHLRVFGSEAY
VHVPKEKRRKLDAKAVKMTFVGYAEGRKAYRFLHPDADWIVISRDAKFLENTGEEAVQDSGDLFADDAEPDAAKEPETFD
VPISGGEQRDREPAVAGPSAETTEDDVEQLEPDVEQIELDEDTTDETGSSELETSVYENASEGDLSFHGFPLDEIARRSL
RSTKGVPPVRFDEAFVVAAAPTNDEAEPTSVREALRCDQSVEWKSAMEEELQSHAENGTWELVPLPPGRQPVGCRWVYKV
KRNAAGEAIKYKARLVAQGYCQKFGQDYDEVFAPVIKQTTLRMLLAVASKHNLQLRHFDVKTAYLNGVLQQELYMRQPAG
FEEQGKEDLVCRLRRSIYGLKQSARCWNQRLHTVLEQLEFEQSTADPCLYVKVVEGKRIYLLVYVDDILVGCKSGGEIEK
IYSLLKKEFKMTDLGPANFFLGLEVKCNDGKYGISLEGYIDRIAERFELSDAKGAKSPMDEGFTKTVEESRPLENSTEYR
SLVGALLYVAVCARPDIAVSASILGRSVTAPTLADMAAAKRVVRYLKATKSWQLRYDDPDGELVGYSDADWAGDLKTRKS
TTGSVFLYSGGAVSWASRLQQCVTLSSMESEFVALCDTSQEAVWLLTLIEDFGEPEQKPLTIKEDNQSCIKFVAAERTTR
RSKHVDTKHCYVKELCERKVLQLEYCPTEDMIADVLTKPVGAVKHRKLSSLLGLAAPGSGR
>Copia-13_BG#LTR/Copia 225-4419 via tfasty with Copia-15_AA, 57.8% SW:1121, 1 frameshift and 4 stopcodons. [Blumeria graminis]
NFTLxQCNLEVELAAMRLKRFLEPEYCTPPLVKKETNKVDNEAELLKLEEWEYKNAQALKIILQSINNTNRIAIQSCRTA
ASAYQTLNSRYAMKDTALLSQLLSQLFSVQSMKQSNITEKFDLVVNLSAQIAEQQQDAVIPGIIQAVILMRSLLSKYDTT
IEILTNKDKFPSIHEVFQAIKSTETKLSDSLNQTEIADVAQINRKSGTKVCWVCKGDHVKPQCSIWLASDKGIKFKKSGL
KWHQWQENQKSRKQIANSVNVLTLDSTVHFSDSDSNSNTESEISTYICAATSSSLNGTWGLDSMCSCHLTPHKNSFISQI
VPVKIPIEVANGSTIYSKGKGDVRIQWKNPTTQHLCSSILRNVLYVPDASISLISLGMLAEKGHEINCDNKNMMVSASNG
QLILRGIRQNKVWIIPKILESAHSSINQANLLHERLGHPGRHITMRMTKRVTGIALTDNLNYSFCRACKEAKMPRKISRE
PMREVSRPLERIHMDICGPFRTRSWHGDRYMLTVTDQFTKFKWAIFRDSKKDLAQFIRKWCSRVEKEREVNGNSEELHAF
RFDCGTEFLNKDMKNWATSENISRESTVGYRPEANGVAERANRSIMERANSLRFRAGLPEEFWELSSRAAIYLINxQPIG
GRCIAPWTMWHNETPDIGQYRTWGCAVYVHIPKEKREKLDKKCWKGIFVGYKTNSSKIYHIWHPGNKILIEAQSVEFDEN
DFSPDAKLHNLLGQKITDQDKSDDESDDDFGDEINVCSNDNLNNEPPNCNPEKQHSQSLQNSETLPNINNQHQNLSRQQK
YSEYLRKLEEEALIRGDRCSGRNRNPSAKTIDMQNIRQQSNIAIEPAFLAAQNDGIDIPQTLEDALNTPQADKWLEAYES
EMNFLIAHGTFPGPLYKIPLNKSAVTAKIVLDVKRGENNEILRFKARLVARGFTQKYGVDFEETIAPTICLDAYRIILAI
AAREKWDIYQMDVVTAFLAGKLNAEVYIKMPKHIVERFGxYARVLKSLYGLKQAARVWYLLLSEFLVSIGFTYLPMDQTI
FRNEKTKVVIGIHVDDLIITGPSNQEIENIKENLSKRFSMKDIGRARNILGVRIAQNDDYLMIDQSQYARSIINDFSMSG
TKIYSTPMATDAVGELERTPRKPCTNEELESYWKLVGKLMNLCNTRPDIIFETHKMAQYSHKACHNHWIALLRILSYVKG
TIDYGIRYGRGDVETPYYKVDNNIEVYCGSSRSTDLTTFADSDYARDPSDRKSITGVIMMLNRGAVAAISKKQTSVATST
TNAEYIAASEGAKLAIWGDKLISHITGSSGNSIPLLLGDNKACIQLQGGVSNTSKIKHVDVAYHHIVDEINKGKLESRWI
KGDYMLADGLTKPxPGPMFKLKRAAMGVVQIVKADHQR
>Copia-11_ST#LTR/Copia 83-4597  [Solanum tuberosum]
MNDATGATDVSNGVEATVRTGTIETLEDIDRKRNHPLYIHNSDTPGSVLTTVQLTGTENYSLWSRSMLINLRAKSKLGFV
LGTCKRSDYQGELEEQWEKCNAFVLAWIMNTVSKELLSGIVYATDAAMVWADLKERFDKVDGSRGYQLHREICTIHQGNS
TVSAYFSKLRLLWDEFDALVPPPSCKCDKSITYVDHLACLRLFAFLMGLNEVFGHARSQILMMNPLPSVGKAYAMIMADE
GQRMTASTHSVGGILEPTALYAGRSDYQRKSQVKKKNWDKICDYCKIQGHIKENCFRLIGYPPDWKFKKKSGPIASQGNQ
LEMANNVTDKGHEASYETDPADAFAPRLQEQNLYHQFRHMMDKEEPTSSSGGSIGMVNMAGISSTPNALSVTIDEAKKEQ
RWIVDSGATCHITSKISRLSSAYSCVGKNVQLPNGEHTSVTHIGQCKVVNDGVLTNVLVVPTFKYDLLSISQLTRQLRCS
VNFFPEFFVIQDLSNGKVKGIGKEIDGLYYLYAQRKCEKGRGNGMVSMIQHSTSHNLLWHNRLGHPSPKVLKHICGDTVA
VDFSACNKCTICPFAKQTRLPFQTSMTRAATIFDLLHLDVWGPYRTATHNGCRFFLTIVDDNSRMTWLYLLRMKSDVFPM
LKSFLILVQNQFNRSVKKIRSDNGTEFFNREVNALLTSLGIIHESSCPHTPQQNGVVERKHRHILEVARALRFQGGIPIK
FWGECVLTAVYLINRLPTAVLKGQAPYEKFHGHKAKIDHLRTIGCLCYATRVVKPDKFSPRAEACVLMGYSATQKGYLLY
NTSQHKFMVSRDVVFREDVFPFLQKIKTQQPLFPGDVAVNPAEDMDMPMHNADNSIGLHENGDADNRLPETGGPNIELPV
NPEHEDNEVTVQAAVEHEDNDQAEVEHEDNELTVQAEVTGQSSRQSSRISHPPIWMKDYVVPGSHHHTYSQSNYVSYDNV
SSKYSVYLSKFSIDCEPRNYEEAVKDPRWVHAMQQEIQALEENGTWKLVPLPAGNVAIGCKWVFKIKYKADDEIDRFKAR
LVAKGYSQTEGIDYQETFSPVVKMVTVRSIIALAAAENWKVYQMDVFNAFLQGDLFEEVFMELPKGFCSPKKDKSLVCKL
VKSLYGLKQASRQWNAKLTEAFSISGYTQSHLDYSLFTKRRGSGMVVILVYVDDLLITGNDVGLIEETKHVLHSHFKIKD
LGELKYFLGIEFLRSGKGIVMNQRKYALELIAEAGLGNAKPNVTPLECNMKLTSAEYDQDAQTNDGLYEDVSRYQRLIGK
LLYLTNTRPDIAFAVQSLSQFMQKPKMSHWIAALRVIRYIKLEPGKGLLMSSDCKPHFTGYCDADWAACPTTRRSVTGFV
LKFSDSLISWKSKKQNTVSRSSAEAEYRSLASLTAEVVWTASLFQELGIKLIEPTSIFCDSKAAIQIAANPVFHERTKHI
EIDCHFIREKIQKGLIQTIYVNTKDQQADLLTKALGRTQHEFLLAKLGVLNIFSTSSLRGNIGIG
>Copia-10_SB_pol#LTR/Copia 2258-5563 [Sorghum bicolor]
VYSSGGPSWVLDSGCTNHMTGEKSMFTSFQPNQTTSERIAFGDNSKGDILGLGKIAISNDSSISNVLLVDSLGYNLLSVS
QLCEKGYNCLFTDKSVEVSRRSDSSIAFTGQLKGKLYLVDFSASRVGSETCLVAKSSMGWLWHRRLAHVGMRNLADLQRG
EHILGLTNISFEKDRICSACQAGKQVGAKHPAKNIVTTSRPLELLHMDLFGPNAYISIGGNKYGFVIVDDFSRFTWVFFL
KDKSETQGIFKKFARRAQNEFEVKIKKVRSDNRTEFRNTNIEAYLDEEGIKHEFSVAYTPQQNGVVERKNRTLIEAARAM
LDEYKISEKDYWAEAVNTACHAINRLYLHKLRKKTAYELLTGKKPKVDYFRVFGCKCFILNKRSKSSKFAPKVDEGFLLG
YATNQHGYRVFNETTGQIEIAVDVTFDESDGSQKEQVNAEILGKEEPSHQVIKKLATGEVKPVEEEEDDAHLQIPRDPNL
HHGSTSTHDNASTSRRGHDSREQAGQDPPQAQEPNQDGDQNVEDLDSSINQDHEDEDDGPIQTRTAVPHPRVHHSIQRDH
PVDSILGDIQRGVTTRSRLVGFCEHYSFVSSMLPNRVEDALADPDWVMAMQEELNNFTRNEVWSLVERPKQNVIGTKWVF
CNKEDEYGVVTRNKARLVAKGFTQIEGLDFGETYAPVARLESIRILLAFAAHHDFKLFQMDVKSAFLNGPLSETVYVEQP
PGFEDPHHPDHVYKLDKALYGLKQAPRAWYDCLKDFLLKQGFEIGKADPTLFTRKVNNDIFICQIYVDDIIFGSTNADFS
EEFSRIMTKRFEMSMMGELTYFLRFQIKQLKDGTFISQTKYTTDMLKKFDMDKAKPIKTPMPTTGHLDLDGDGKAIDQKV
YRSMIGSLLYLCASRPDIMLSVCMCARFQANPKECHLMAVKRIFRYLVFTPNLGLWYPKGSTFTLLGYSDSDYAGCRVER
KSTSGTCQFLGRSLVSWSSKKQNSIALSTAEAEYVAAGACCAQLLWMKQTLRDFGCEQSKIPLLCDNEGAIKLADNPVNH
SRTKHIDIRHHFLRDHQSKGDIAVQHVRTEYQLADIFTKPLDESRFCALRPELNIVDSRNMA
>Copia-10_EPa#LTR/Copia 40-3078 via tfasty with ATCopia35, 66.1% SW:3297, 3 stopcodons. [Eutrema parvulum]
MTDGAGAIVTTKPKEGRGSSSITCTMLTSTNYTVWAMRMRVTLKVHKVWEAIDAEIVNGDKNDMAIALLFQSIPETLILQ
VGELDTAKKVWEAIKTRHVRAERVREARLQTLMTEFDRLKMKDSETIDEFVGKISEISSKSSALGTIIEEPKLVKKFLKS
LPQRKYIHIVASLEQVLDLNTTNFKDIVGRLKAYEERIFEEEETHEDQSKLMYANSDTSSYSNHEYNGNYRGRGRGGRFS
PRGRGRGRQGGKDMSHITCFRCEKTGHYASQCPDRLLKLQEVQENEKDTQDVDELMMHEVMYLNEKHCVPSKFESKIDGE
DVSYLDNGASNHMTGDKRYFDTLDSSITGRVxFGDDSTIDIKGKGTIVFIDLNGNSRKMTDVYFIPDLKSNIISLGQATE
SGCDIRLKGGDLTMRDHDTERSRTRLYKVRMGLSNTTCLYSASINESSKWHARMGHVNFATLKSMIDKDLVQGAPNTELE
KEFCSSCLLGKQARQSFPQATAFRATRKLELLHGDLCGPITPSTSAGNWYVFVIIDDYSRYMWTILLNEKGDAFKKFQNF
KTMVEKESEARIGTLGTDRGGEFVSLEFNSFCESSGIKRHLTAPYTPQQNGVVERRNRTIMEMARSILKHMHMPKYLWGE
AIRHSTYLLNRIATRSLKDLTPYECFQKMFxGTIVYxREMKEHLLIIGVYVDDLFVTGTNLNVIEEFKKEMASKFEMSDL
GRLTYYLGIEVFQHQSGITLKQTRYALKILEEAGMKDCNPVHVPMEFGLKLSKAEDEEEINPTIFRKNVGCLRYLLHTRP
DLSFCVGVLNRHMQSPQTSHGAAMKQYLRYLKGTTTLGLSFERTSVPNLVGYSDSSHNVDPDDGKSTTGHIFYLGSSPIT
WCSQKQDVVALSSCEAEFMARTEAAKQAIWLQDLLCEIMGSSSKKVTIHIDNQSAIALTKNPVFHGKSKHIHRRYHFIRE
CVENGQIDVQHVPRSEQKADILTKALGRIKFKEMREIMGVRDLEKMDFKLKEE
>Copia-10_TMe#LTR/Copia 166-4347 via tfasty with Copia-8_TMe, 83.2% SW:4562, 2 frameshifts and 2 stopcodons. [Tuber melanosporum]
MSEFVDTVPTGRLAFPLLGDTNFGPWRQRMSDQLKELDMRWIVSGKEIAPDEDSSDAAVVAAYTKYQRKCIRITAKIRNA
MEPHICAQYTSDDYDKDPKSLWDKLVEGYRKALGLELDYFRRSLFDCSLEAHGTAAKYIHELERIIECLREAEEAIKPRE
KTFYLLNGLPPSWRExRDLQATIIKPDQPEDLIAAIKARESSLNRDGSGTAGKDSVLAVKGRAFGNSKTRSGANGRSRRG
SSEDSREESMTCYYCQKKGHRRSECRKLKADTAKGTRQDKVTTAAQAAQANQSSNSLFTAYSSSAFTVSTQQWLLDSGCS
THVTGAREDFISYTPIPEGEHRIRVANNMEIDALGRGDVKLVVWDSTRKRKTAFVIAGVLHVPACNKNGLLSVSQLRLTG
VFTEFLPGEGAILRKRDGTHIEVIEREGLYVLQTCQHSVSSDRILMSETELPTNDEKAVKAAALWHFRLGHLGTDAVRRL
SMEKNEIPRLRRVARCVCASCVYGKMARKPFPLVPAMSRATQPLELIHSDIAGPIEPKSLRGSSYLLMFTDDFTRYKIGY
LLKKKSEAFACFKEYKALVEKQQGRSICKLRTDGGGEYTSNEFCHLLQQEGIEMQRMTPYTPLSNGVSERANRTVIGTTR
ALLHAVNAPKQYWAEAAMTAIYVRNLFPRAIRPGSTPFELWYRRKPGYEHFRVRGCVCYAQVPKETRKKLDKTAKKYIFI
GYTETTSQYRLYDPQRKRFVISRDVQFEESTSYFSFQTAEGEVPVRFYAPAVEPWEEQLAWGDEFDEEDEGVAAEEVKEI
LRYESEEEEEREEPDLEPEARPMDKRPKMLRELESDGESAFxDARKGELPAIKETGHRTRSGNVSSSAGSSSAMASVVYM
VEAGPRSYKAAMESEDAKEWQKAIDSEYASLERNKVLKVVEEIPEDKKAIPTKLILQRKLNPSGETVRFKARLVAQGFRQ
VEGLNFTDTFAPVASLASVRIVLSIAAKKGFIIRQMDVVTAFLGSALEEEIYITLPDGAFGARLARLNRSLYGLKQSPRC
WYTTIDSFLLNKLGFRRGRFDCCIYTHEDSTILALYVDDMLIAGTALNVVSVCEKLKARFEMVDLGTVGHFPGMVVAREE
ETRSISLTQEGYIERVLERFGMAGSKPVRTPMEKEKPGLRHEGDVLCDKTLYLQLIGSLGWIATGTRPDIAFAVSYLGRF
NAEPTEQHWVCAKRVLHYLAGTKHLRLMLSLGGETDRELSLEGYVDSDFAGDAGSFKSTSGYAFLLGSGIIQWHSKRQSI
TATSTANAEFIASASAIQELVWFRRLVAEITGKDLPVSTLFNDNQASLSTFKDTTYKPHSKHIGVRVCQIRELIEDGKDV
TMEYVGTNNMIADGLTKPLVLVKHVEFVRMCGLV
>Copia-11_GM#LTR/Copia 34-4416 via tfasty with Copia-11_Pru, 83.3% SW:5296, 3 stopcodons. [Glycine max]
KNSPQKQPNSSSNNSNKNSSNMDSSNPYYIHPSDHPGHLLVPIKLNGTNYPSWSISMIHALTAKNKIGFINGSIKAPSAV
DQSAEHALWNRCNSMILSWLTHSVEPDLAKGVIHAKTAHQVWEDFKDQFSQKNAPAIYRIQKSLASISQGTMAASTCFTK
IKGLWDELETYRTLPTCNQMKAHDEQREEDRLMQFLMGLNDTYRTVRTNILMMSPLPNVRQAYSLVIQDETQRQMTSETT
ENFSIAAAIHSHPDNLSNKFVKDKHCEHCNRDGHTISNCRTLKFYCDFCNKNGHTEDRCRIKNGTYNTGTQSNKHIQSQQ
RQQGPRSTAPRTFSAANAADSSKNALELSAEQLQQLARALNMMSPNNTSGNSNAHANAAGLSLFSNASINYVFTKPWILD
SGATDHITSDSTFLSETKFPSIPSVNLPTGSSAPITSIGDMSFNSNITLKNVLCVPSFRLNLMSVSKLTKSLNCCVILFP
DFCVLQDLATGKTIGSGEQCGGLYYMSPLQKIPVSHQVSQPSNIWHMRLGHPSTSRLKLCSPLLSPNNISFENNCNVCPM
AKQTRFPFPLSTISTHAPFDLLHCDIWGPHKVPTHSGARFFLTIVDDFTRCTWVFLMRYKSDSQNILKSFINFAYTQFQA
TVKEIRVDNGSEFMSMREFFQSHGIEYQRTCVYTPQQNGVVERKHRHILVVARALLFHSHLPLEFWGECVLTAVYLINRL
PSPLLSNKSPFELLYNKPPSFDHLRVFGCLCYATIVQPTHKFDPRAKRGIFVGYPTGQKGYKIYDPETKTFFVSRDVKFC
ETNFPSIPNTYEPNLTSSHPSYEAIDDWPSPTPSHHQSQQTGIPSAHEPNYPSHLTTETSSAASPIVEPTLPTSHTSNTP
TPSIPQVRQSLRDKNPPIWHKDYHMSTQVNKSPSEPTSGSGTRYPLSHYLSYSRISSxHCAFLANITAHTEPQSYDQAVH
DPHWQDAMNAELEALEQNNTWSLVPLPSGHKPIGCKWVYKIKYKSDGTIERYKARLVAKGYTQVEGIDYQETFSPTAKVT
TLRCLLTVAAARNWFIHQLDVQSAFLHGDLHELVYMEPPPGLRRQGENVVCRLNKSLYGLKQASRNWFSTFSEAIQKAGY
QxSKADYSLFIKSQGTSLTIVLIYVDDILLTGNDLQEMKRLKEFLLKRFRIKDLGDLKYFLGIEFSRSKEGIFMSQRKYA
LDILQDSGLTGARPDKFPMEQNLKLTPTDGVVLNDPTKYRRLVGRLIYLTVTRPDIVYSVQTLSQFMHEPRKPHWDAALR
VLRYIKGTPGQGLLFSSANDLTLKAFCDSDWGGCHATRKSVTGFCFFLGNSLISWKSKKQVVVSRSSAESEYRAMANTCL
ELTWLRFILQDLKVPQDAPTPLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQAGMINPSYVPTKFxLADVFTKAL
GKDQFVTLRNKLGLHDIHSPT
>Copia-11_AA#LTR/Copia 109-4122  [Aedes aegypti]
MEALNKFVRLNNHNWQTWKFRMEMLLTREDLWYVVETPKPDENAIQWEKDDKKARATMGLCIEENQYGLIKSAATATQFW
NNLKAYHEKVTVTSRVSLLKRLCSLNLLEGGDLESHLFEIEDLFDRLTQAGQELNDSLKVAMILRSLPDSYSGLVTALES
RPDADLTVVLVKSKLLDEFERRKERSVPGSSGRSGELKALKSFGKRNMSVSDRVCFFCKQKGHLRNDCAVLQEQQKRKSE
RKKKKNEPSAAKQAVTENKSAVLFLVNGIRSSGWIIDSGASVHMSNDKRFFESIDETDVHDVILADGRSVKSVGCGTVKM
SGVNGFGGAVDVILEKVLYVPSLNSGLLSVTKLTSKGFLVVFREDDCDITDASGKVVAKGDRCGSLYQLRMAEEALKVEK
MHHNESCQHQWHRKLGHRDPAVVGQLCSKKLAEGVVVKDCGIRIACETCMEGKLSRAPIPHQAERKSTQVLDLVHTDLCG
PTKTPTPSGSRYLMTVIDDFSRYTVVYLLQKKSEAVDRLIEYVRYVETLFNRKPRMVRSDGGGEYVNERLQNFFKSEGIK
CQYTTAYTPQQNGVAERRNRYLQEMATTMLLDAKLEKKYWGEAVVTAAYLQNRLPSRAVDVTPFELWYGRKPNLEHLRVY
GCKAWVHIPDVKRGKFDSKARKLTFIGYSEQHKAYRFVDLATEKVTISRDARFLEMDEAQRQEEVTVLQAPDENYTEFVP
CNVPSTSKQFLVEAPVKETVEPDRCERLGDLQDDDEVHSEHEQFFDISSSSLEDPLAVKDEPLDSEEAEPDPREQATGKL
PRRNRGKLPDRFSDYVVGVATQQAKEPVTFDEAVKSSNSDAWRKAMDEEFQSHLRNGTWELVNPPAGKRVIGSRWVYKIK
QDETGAVVRFKARLVAQGYAQRYGVDFDEVFAPVTKYATLRVLLVLAGKDRLCLKHLDVKTAYLYGSIEEEVYMRQPVGY
EVRGQEEKVCRLRRSIYGLKQSARCWNRKLSDVLLKFGFVACNADPCMYVASRNGRKVFLIVYVDDLLVGCSSEEEVAKV
YEELRKEFEICWLGDAKYFLGLELQKEDDGFYSMSVKAYIEKLIGKLGLQDAKVARTPMDQGYVKDKTASENLKDVSQYR
SVVGAVMYIAVTARPDIAAAASILGRKFSAPTEIDWTTAKRVVRYLKATKDWKLKLGCEGGKLLEAYSDSDWAGDPDTRK
STTGFVIFYAGGAVSWASRRQDCVSLSSMEAEYVALGETCQDVLWLRRLLSDIGENQECATTVHEDNQGCLCFVRSERTS
KRTKHIETKESFIKDLCDRGIVKLQYCPTDEMKADILTKALGNIKHDRFTELLGFVKG
>Copia-65_ST#LTR/Copia 203-4831 via tfasty with Copia-6_ST, 84.1% SW:5111, 4 frameshifts and 6 stopcodons. [Solanum tuberosum]
MVNDQIVVDQSQTVNNGQGATGSLHGSTGSGNTGTRQGIDYNHTLFLSPTDVSGISIISFHLVGVENNTLWNRFIRLALL
GRNKIGLIDESSRKEVYSEELWGQWERVNDIVLSxLMNSVSKSLLSGIAFATTAFDVWTDLNERFDRVDGSRSYSLHKDI
SSLQHGNMFVFVYYTRLKNLWDEFEALVPSPSCNCDRSKGFVIHLNRQKLYQFLMGLNDSYHQARSQILLMNPLPTINQA
YGMIVGDESQKVMVTHTNNTSSMGMSFISKNSVALYSKVGSSVNQKFKRNYMLVCEFCKCKGHSKEFCYKMIGYPLDFKS
KRKTQGVTSGQVTADVRHTNTSTSQANFSYGMNTNVHIPSIGTRLNHPQLTxMLTxLVKPQxDSENDVQQLLEGCTFTKD
QYDHILHMFQQRSEPTVAAYNATHSTGNVFFVSENSDVWIVDTWATNHMVSNLDMLIKEFVSKLKVPKTVYLPNDNATQV
THVGSCALSTRSVLIDVFHLPEFKYNLMSVNKITKELGCSVTFPLHFCVFQELYSGKVKKVGKEAGGLYLLLYQVVDKRK
KSALMVAFVATNPSSECHDSDMELWHNRLGHVSSIVLSRMFDMNKQSLCKISKCLVCPYAKQTRVVFPTSSIKSKCCFDL
IHIDLWGPYNTPTCDGNKYFLTIVDDFSRMTWLFLLKLKSDVCVSLQVFLQFVKTQFGKMVEIIRTDNGTKFVNSVCDQM
FKDMGIIHQRTYPYTPQQNGVAERKHRHILEVTRAMRFQAQVPLRYWGHCVLAATYVINRLPSRVINFQTPYERLYGTAP
VLSHLRTLGCLCFAKDLSVHDKLMPKSRMDVHMGYSEVQKRYLLLDLSSKSFFTSRDVLFREEIFPFSQSKKQVHQPVIT
DPLQDTCVLFPHLDLASLPPCGPSSDDVLQxCDDPQPEVPPMTVADRVDSAERSDCVHAAINDTSAPEVVSSATETDIVP
TNMRSTRIRQAPLWLKEFVSLQGHKEVKYPLCNYLSYSHLSPSYQCYIAATTPCKEPTSYSEAIKDQKWVAAMKDEIQAL
DSNNTWEITNLPPKKKPIGCRWIYKVKYKSTGEIERFKAILVAKGYNQQEGIDYNETFSSVVKMVTVRTIVSLVASRHWH
IHQMDVFNTFLQGDLDDEIYMQLPLGFVSQGEKVCRLTKSLYGLKQAPRQWNHKLTETLLKLSFKQSQYDHSLFINKSKE
GIIIVLVYVDDMLVTGSSLKLIEETKKALQLAFNMKDLGELKYFLGIEFVRSAEGILMHQMKYILDLISEVGMTTTRPTG
TPIDINVKLTSKLYDDHLSKQTEELEDPLVDQTMYQKLIGKLLYLNMTRPDISFNTQTLSQFLQxPKKSHMDATLRVIKY
LKRQPGQGLLLSSDSDKLVVSAYCDADWASCSITRKSVTRYMVKIGKSLVSWKAKKQTTVSRSSAEAEYRSLASTVSKLV
WLLDMLKEVGVEVQLPSQIYSDSKAAIQIVANPVYHERIKHIEIDCHFSREKLQKGLIKVDYIPTKEQPADILTKGLTIL
QHDHHLSKLGVLNIFAPPSLKGS
>Copia-65_SB#LTR/Copia 41-4421 via tfasty with Copia-23_SB, 1 frameshift and 1 stopcodon. [Sorghum bicolor]
MSTSFVPPASYTFIGCPVTEKLGKNNFPLWKAQVLSAIRGAEVAHFLDAATAGEPPKFIPKAKETPDELIINPEHLKWVA
KDQQIFNYLISSVSRDVQVQIASCTTAAEIWKAILDMTASQSRGRVINTRMAMATAQKGSSTIADFFSKMKGLADDMAAA
GKKLDDEEIASYILAGLDRDFDPVVSGVSNRDEPVSLGNLYTQLVSWEQRINFSNGGGDNSSSSANAAARGGRGGFKRGG
GSRGRNNGRGRSNNGNGGRPRQKSNEECQLCGLEGHTVLRCYKRFNASFQGPAQEKRQASSATAGYGVDTNWYTDTGATD
HITGELEKLIARDKYHGTDQVHTANGAGMRINQIGQSIVHTPNRNLVLKNVLYVPEANKNLASVHCLTSDNNAFIEYHPD
HFLIKDQVTRKTLVRGGCEGGLYPLKSFRSTSNKVTHAAIKPSTSRWHSRLGHPSSSIVQQVLSKNNVPFVSESNKEQMC
DACQLGKSHQLPYPVSTSVSSSPLELIFSDVWGPASTSINRHNYYVSFIDDFSKFTWIYLLRHKSEVFQKFHDFQSMVER
QFDRKILSVQTDWRGEYQKLNTFFQRIGINHHVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLTATYL
INRLPSKVIHHQTPLERLFGHKPDYLNLRTFGCACWPNLRPFNAKKLQFRSKQCVFLGYSTMHKGFKCLDVAEGRVYISR
DVIFDETVYPFSKLHPNAGARLRSDILLLPTDLLNPSSGFGGEHTFDSADNDSLHTNPCNEHADSPDDSASDGANPRQTG
RDFMQVGGFPFSAGTGANPGTDLPVDPPASATTAGESPLQSTPVSSTAPSSPPSPSVLSRSVLAPTAGRQGQGAPAPSSM
TASGPSAPSSTHAGGHTRSLVADPVASAMAPPPPADPPRPRTRLQHEIRKPKQYTDGTVRYGHLAVTPEESPTLKSALAD
PNWRKAMDAEFLALQKNKTWHLVPPQKGKNVVDCKWVYKIKRRSDGKIDRYKARLVAKGFKQRYGIDYEETFSHVVKAAT
IRLILSLAVSNKWCLRQLDVHNAFLHGYLEEEVFMRQPPGYEDSSKPHYICKLDKALYGLKQAPRAWYSRLCQKLQSLGF
VASKSDTSLFFYKKGGHVIYMLVYVDDIIVASSSQAAVDALLRDLDKEFAIKDLGELSYFLGIQVQRKNGDLLMNQERYA
TEILQRTNMQMCKPVATPLPTTEKLSLQSGSSLGSEDSTRYRSIVGAFQYLTLTRPDISFSVNKACQFLHSPTSQHWEAV
KRILRYVKGTISLGLKIRKSDSNLVSAFADADxAGCPDDRRSTGGFAVFLGSNLVSWCARKQATVSRSSTEAEYKALANA
TAEVMWIRKLLDELGICYPRAARLWCDNIGAKYLTANPVFHARTKHIEIDYHFVREQVASKCLDVRFISTTDQVADGFTK
ALPVKQTMLFRNNLNLADKL
>Copia-67_GM#LTR/Copia 1175-5287  [Glycine max]
MYDLCFMSQNAYVKFYYAVPVPNSLNSHVSSVPIFNGLNFSDWNEQVQFHLGVLDLDLAILEEKPATITDASSNEEKAHY
KAWERSNRLSLMFMRMTVADSIKTALPKTDSAKEFMGLVGERSQTADKSLAGTLMSTLTTMKFDGSRTMHEHVIEMTNIA
ARLKTLGMAVNENFLVQFILNSLPSEYGPFQMSYNTMKDKWNVHELHSMLVQEETRLKNQGSHSVHYVSHRGNQGAGKKF
VKKHDKGKGPLKINDGPVQIQKKASKSNNCHFCGKSGHFQKDCPKRKSWFEKKGELNALVCFESNLTEVPHNTWWIDSGC
TTHVSNTMQGFLTIQTISPNEKFVFMGNRVKAPVEAVGTYRLKLDTGHHLDLLETLYVPSLSRNLVSLSKLDVTGYSFNF
GNGCFSLFKHNHLIGTGVLCDGLYKLKLDGLYVETVLTLHHNVGTKRSLVNERSAFLWHKRLGHISRERMERLIKNEILP
DLDFTDLNICVDCIKGKQTKHTKKGATRSTQLLEIVHTDICGPFDVSSFGRERYFITFIDDYSRYGYVYLLHEKSQAVDA
LEIYLNEVERQLDRKVKIIRSDRGGEYYGRYDETGQHPGPFAKLLQKRGICAQYTMPGTPQQNGVSERRNRTLMDMVRSM
LINSTLPVSLWMYALKTAMYLLNRVPSKAVPKTPFELWTNRTPSIRHLHVWGCQAEIRIYNPQERKLDARTISGYFIGYP
EKSKGYMFYCPNHSMRIVETGNARFIENGEISGSTVPREVEIKEVRVQVPLACASSSKVIAPSVVVTNNNEEXQHNNEPM
IHNEPIVEEPQEVALRRSQRERRPAISNDYVVYLHETETNLSINDNDPVSFSQAVSCDNSEKWLNAMKEEINSMEHNGVW
DLVELPKGCKRVGCKWVFKTKRDSHGNLERYKARLVAKGFTQKDGIDYKETFSPVSRKDSFRIIMALVAHYDLELHQMDV
KTAFLNGDLEENVYMDQPMGFSVEGKEHMVCKLKKSIYGLKQASRQWYLKFNDTIVSFGFKENTVDRCIYLKVSGSKVXF
LILYVDDILLATNDLGLLHETKKFLSSNFEMKDMGEASYVIGIEIFRNRSQGLLGLSQKAYINKVLERFRMEKCSASPVP
IQKGDKFSLAQCPRNDLERKQMEAIPYASVVGSIMYAQICTRPDISFATGMLGRYQSNPGMEHWKAAKKVLRYLQGTKDH
MLTYRRSDHLEVIGYSDSDFAGCVDTRKSTLGFVFLLAGGAISWKSAKQSVVAASTMEAEFVACFEATIQANWLRNFISG
LGIVDSIARPLKMYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEHISTNLMIVDPLTKGLPPKTFIEHV
ENMGIIVIDDH
>Copia-72_Mad#LTR/Copia 141-4517  [Malus x domestica]
MASDDEVSDPPIQSFTPGESNSTTQVVTIQNDNSNFSAGIKLDENNYSLWHQVIEMKIAGREKHGHLSGDTEQPAITDPP
YNKWRAENCQVKSWLFDAMTPNQMKRFIRYDTAMQVWDAIKKTYSDGSDEAKIYDLHKRSFTMKQNGAPIANYYSDLTEI
FQELDQLSPTNMKDPDDILSRQQEIERLRVYIFLAGLDNKFDQIRGEILRMEPKPGLEGAYSHVKRESNRQGTMSESAAM
PEATVLFTANSRSPQGPRLQNINSSTADRFRNRPPMQCTKCGLKNHTIQGCYEIIGYPEGWVHKGRKKESSRASFATSES
SQDVSSSDHVPKALNTSGISNSTSANTCNRSWIIDTGATDHMTSDANILHSLKTANQTFITSANGSISPVTGEGSLSLTS
SLNLDHVLVVPSLDYDLLSVSQIIDSLNCSVSFLPLYCLFQDLLTRAVIGCGTRRGKLYYLDLTEECSNRLSQVHHVSRD
ESTRMKKIWLWHRRLGHPSFGYLKLLFPELFPQFKESDFHCEICILAKSHRVSYPLRLNKSSVPFMVVHSDVWGPARILT
TSGFRWFVTFIDDCTRMTWVFPMKHKSEVPTKFNIFHQYVATQFDKKIQTLRSDNGGEYVNHALHNYLQEHGIVHQTTCA
YTPQQNGVAERKNRHLLEVVRASLYGANMHHKFWGEALCSATYLINRTPSSTLQYQTPFQTLNHLLTIPSIPNLEPRVFG
CVAYVQVYPHQRGKFDPCALRCVFLGYSDTKKGYKCFHPPTQTLYITADVQFQEGETYFSKGDIEYPLQEENSMFEEDTQ
DISNIKIVAEISETEINVDKSADDCNQTIHAETESSTPTSDTEVHPATLSPDGLGLPSSTVPHDQSAPEHNQQVTDQSNS
IEIVPESSQIESTNYQLPPRKSRGIPKQLYDPDPRAKVKYPIANHVSLHRLSTSCEAFVNQLSTVSIPCSVEDAMKDPRW
TRAMNEEMEALQKNSTWELTNLPKGKKSVGCRWIYTVKFNADGTIERYKARLVAKGYTQTYGIDYGETFAPVAKISTIRV
LLSLAANLDWPLQQFDVKNAFLHGDLEEEVYMELPPGCKLDPNQTNNVCKLKKSLYGLKQSPRAWFGRFTKSMKFFGYKQ
SNSDHTLFLKHKKGKITALIVYVDDMVVTGNDPEEKAALQKYLASEFEMKDLGALKYFLGIEVARSQQGIFLSQRKYVLD
ILTETGMLACKPADTPIELNHKLGEYPDQIPTNKERYQRIVGKLIYLAHTRPDIAYAVSMVSQFMHAPSETHMDAVNRIL
RYLKSAPGKGLMFSKHDHLDVKGYTDADWAGDVTNRRSTSGYFVIVGGNLVSWRSKKQKVVARSSAEAEYRSMAHGVCEL
LWVKNLLRDLGFRPKHAMRLHCDNKAAIDIAHNPVQHDRTKHVEVDRHFIKEKIEARLIEVPFVKSEDQLADMLTKAVTS
SVFHNSLSKLGIHDIYAPT
>Copia-68_MLP#LTR/Copia 201-4331 64.1% sim to Copia-29_CQ, SW:1433, [Melampsora larici-populina]
MQCYKVLLILILFVFNQFFFMSNPSATAGDKTTSTSSKSPGTTQQQTGQQQTGRSELKPPITMTYNNEKLEATGVKPLEA
PGESSNYHYWQFVIGTVIRGSSFGYVIRDVQPNPLPASNEHDRCKVSALILRYVTEANIEFLSPYPDDPLNQWKALREAH
QDASSGSVMFWLKKLVTAKMGDSSITSHLETMAADYQRFKSLVTPERPLTADTIFATAVSLSLTADWQPVLHPLLQRDSV
TSTTILKVLREEATRRSISSDSVEEISSARNEEKNKEKEVICSHCKKPNHKMEDCRFLKSLIEKYKILKAEKNENDQVKS
KPSKNQVKRSKAKAKAARISSDSDVSIDINSEISASATVKASAVKSDSWLVDSGTSQIMTPFSQTLSNRKSDGTMISLAN
GSTVNAVSKGLVELPFTNFKDIKSLYVPTLSEPLLSVSKLADKKISTVFDASTVSFVKNLKFTGETVGTGERSGNLYYLN
QKVGNLNSTDHTSKASVSDVELWHRRFNHPGYAALKRKLSLLKIKVDESELRKLHSCKICIQGKMRRRNMSSRAGWRSKK
PLSVIHSDVSSYSVVSRKGYKYFVTFIDDYTKYTKVYLMQSKDQVLSKFKLFYNEMTNKVDGIIAELRTDNGTEYINSEF
SKYCAEKGILQTTGPPDSPQLNGVSERWNRTIKEKVRCCLIEAHLPDRFWGDALEYATETLNNMPTRTNDKFQTPISLMG
IRERQEHTFHAFGCQVWYHVIKPMSTLKPRAKSAIFLSYLINNEGAIVWDVEKKCALKATSLIFLDKVFPGLDSDSLLPV
PSEESSLPWPTLEEHSIPTEDSIPSNDPSQEPSPLQQIYTRPVRSRKQPVRYGEFGRAAFIECEKDPTTYKQAKRSANWD
LWKLAAEAEMRSLVGKETWKLVPRPARRKIIRCKWIFKTKRNIDMSIDKLKARLVALGFSQIKGIDFSEVFSPTSRQESV
RLFLSIMAKNGWKGVSLDIETAFLNGDLDEEIYMEQAEGFVDSEHPDWVYKIMRSLYGLKQSPRQWNIKLHQFLISIGFI
RSKHDPSIYYKMNDEGNIKCLLCTHVDDIAVTGENAEIQDFRSLIKKRFEISSDKPLSHFLSLKISEVKNNMVSVDQSHY
ITNLQKEFMKNKVKLFNTPNDDNFKTLVPFKDEDEITENSYSSLIGGLLWVAQCTRPDIAFVVNRLSQFLKKPSTVHWDA
ALRVLGYLVRTKDLRLNLGGKELSPTAFSDADWAEDRHERKSTTGYVFMLGNGPISWRSRKQRTVSLSSTESEYMAMSDS
CREARWLVSLLNELNVSKEKMFRLCVDNEGAEALALNPSHHSRTKHIHTRFHFVRQCVEDGIVKLIHVSSSKMLADMLTK
GLSRVLLIKHRLSLSIY
>Copia-56_ZM#LTR/Copia 61-4544 via tfasty with Copia-101_SB, 75.7% SW:3594, 2 frameshifts and 3 stopcodons. [Zea mays]
MPPRRRSSTPRRRRSPSPTDSRAGGSGGQDRGLVIHRSVREIGNSGWPILTKTNYTEWSALMRVMPQGRHLWEAISAVTG
EFIDDRNALETLCKVVPPELQGVLANKATAKEAWDALKTRHLGVDRVRKAKAQTLRQEFDMIAFREGDFVDDFSCRLTKI
TDQLAILGEVYEEETIVRKFLQALPERFHQIAVAIKTLLDLEEVSLDELVGRLKATEERMDCAKSKGGVGPSAGGKEIND
KMYFTEEQVIARLASRLNLNTDGSGTRGRAQADPGGRRGGRGRGRGRGKNTRSAKGGGEVDDDACRYCGKFGHWARECRK
KKRDEALAQASQPQANLTQVEEETPSLFMAVVQPSVKTVHDTHRVEHVYLNEHKVLPDFDGEQQEMKWYLDTGASNHMTG
NADIFSDYTRDVVGSVRFGDGSLVEIAGWGSILFESKDGGHRTVHDVYHIPRLWSTILSVGQLDENGSRIDIEDGVLHLW
DRRSHELLAKVHRSSNRLYILPLKPTKPVCLAASYNDDEWRWHARFGHLGFQALQKMGRDGMVRGLPSIEHVEHVCDACL
AGKQRRAPFPQAATYRATKPLDLLHSDLCGPITPATPDGKRYIMLVIDDMSRYMWAVLLANKSDAEDAFRKLCAGVENEA
GRKIKAFRTDRGGEFTSNSFLEFCSERGIKRHLTAPYSPQQNGVVERRNQSILAMARSMMKAKAVPARLWAEAVMTAVFL
LNRASTRSLVGRTPYEAWHSERPVVHFLRVFGCVAHVNITKPNAGKLDDRSRCTKMVMIGYEAGSKAYRVYDPVANRVHV
TRDVVFEEGATWGWNSSDNRDQEGSCNDGDQDTFVVEEWEETTAASPTSHASPLYTRDGGASSSPSGSTFLVPTPVPRSQ
GSSSASQSVETSSTSSTSTSSTTSCPRTQHVKGGPEPWQGPLPPRGVIPVEFVSPSSGALQALDADDNSEDAHRFRVVDN
LLYDDDELVADGDLLLAVDEEPSTYGEAAERQxWRRAMAEELKSIADNKTWTLTDVPPGKKPIGLKWVFKIKRDADGNIT
RHKAxLVAKGYVQRAGIDFDEVFAPVSRLESVRFILAIAAHYGWMVHHLDVKSAFLNGDLVEEVYVEQPPGFISRGREGK
VYKLHKALYGLCQAPRAWNAKLDSSLLSLGFRCSKEEHAVYVRGTSDDLLIVGVYVDDLVVVGANQAEVVKFKDEMVRLF
NMSDLGPLHYYLGIEVSQSARGITLCQSTYARKIIEKAGLTGCNSCNTPMEPRLKLSKASSNPPVDKTLYRSIVGSLRYL
VHTRPNIAFAVGYVSRFMEKPTTEHWSAVKHLLRYIAGTKTQGCVYRRGKGTLELIGYSDANHAGDGDDRKSTSGAIFFL
GQSPVSWQSQKQRVVALSLCEAEYIAGATAACQGVWLSRLLSDLLNTKVVAPILYIDNKSALALAKNPVLHDRSKHIDIR
FHFIRDCQQRLVETDFVRTEDQIANILTKPLPRERLQELRIRSGVTSIEPAQHI
>Copia-50_Mad#LTR/Copia 542-5209 via tfasty with Copia-12_Mad, 3 stopcodons. [Malus x domestica]
MASSSFKIESLLGVLTIHLQDDNFAKWSFQFRSVLEGYDLFDFFDGNSVCPPKYVISLEGGVTKEITAAYRDWVKTDKAL
LSLLIASLGDEAIEYVVGCKTAYEAWTNLNDRYATVSRARINHLKTELHTIKKGSDTVEKYLLRLKGLKDQLLAAGEIVS
DNDLIVAALAGLPSEYNMIKTVIVARKSPLTLKEFRAQLLSAEKTAEEFQGGFQFPMIGMYSHGESSNAGSQHGQTFNGN
YGGLRFYPGESSNASKQQGKNFNGGRFGFVGQNQRSNGNGQANISQQFHSNRNNGNSQRYNSRSRFNGGNGFHFGSTNRG
NGYGNSGGNFQNKGGSNWSTWTGNSGQKSAIIPECQICNKRGHTAPNCYYHNEQQSQAPAAIPECQICGKKRHIALNCFH
RSNYAYQGANPPPTLIAMTAQSQSTFNLNQAWIMDTGATHHMTGDINDLEMIAPFEGDQKITVGNGKCLPVKNTGSNSLY
TQSKILYLASMLHVPTLAASLLSVYTLCKDNNCCVILDEYGFLVQDKATKAILMRGRSSGGLYYIPKSLFFKHHKQQSVS
LPKAFLGQVVKASLWHHRLGHPSNDVLHSMLSNSKVLYKPDVNKHICSFCLSGKMSRQVFSSSSHLSVRPFQRISSDVWG
PSPVVSLEGYKYHVSFIDDYTKFTWLFPLVYKSQVLSVFxTFFAFVQNHFHTSIQYFQSDGGGEYTSFSFKKFLNSKGVV
HLISCPHTPQQNGTAERKHRHIIETAITLLTTASLPHNFWMHACSHAIFLINRMPCKSLAWQSPYFKLFGTHPLVNSIKV
FGSAVYPYLRHYTKHKLDPRTDECIFLGYVLGYKGVVCYHRGKQRLFISRHVVHDEQVFPFQQSSIVQRTVNGPHYQFKH
PVVTPFVLPIYSGARFGQQHQTTSSVHNGSDLVVQDTSLVNDSPMFSGMGQDERSSSPTQTSHHTTTPQSFHPTTSLLPV
HCPASLEVPFSLPYANDLSSGSIHNDTSDSSNVHSMTTRLKSGVIARKDYSTYSAMAAPISSGSYSSFDDHVLLGCTAVL
DISEPIEPASYKHVVAHSHLRDAMTEEFSALQKQRTWDLVPLPSNKNIIGSKWIYKVKRDQNGAVSRYKARLVAxGFSQT
HGLDYDETFSPVVRHSTVRIVLALAASHKWSLKQLDVKNAFLHGDLQEEVFMQQPQGFKDPQHPDYVCKLRKSLYGLKQA
PRAWNSKFTTYLPTLGFLVSDSDPSLFVKTQGSAVVILLLYVDDIIITSSDSVLVQQVIDELGMVFDMKDMRQLTFFLGL
QITYQANGDLFVSQSNYDKELIKKAGMVSCKACLTTCKPHSQLLKDEGIPLIDPTEFRSLVGALQYLTFTRPDIAFAVNY
ACQFMSTPTDVHFHLVKRILRYLQGTLECGLTYSSTHTLDLLAFSDVDxASDINTRRSTTGYVVFLGQNPVSWQSKKQAS
VSRSSTEAEYKALANAAADVAWIRLILKDLHIFLPSPPTLHCDNISTLALCSNPVFHSRIKHLDIDFHFVRERVQKGDLH
VEYISTADQVADILTKGLHGPLFVQHCHNLKLGFPS
>Copia-49_BRa#LTR/Copia 16-4155  [Brassica rapa]
MTESMDPLSAPSLSISQCVTLKLSSTNYLLWKTQFESFLSSQSLLGYINGSSPRPNPTVTVRNGDVVTEEANPEFVKWMR
RDQLVMAWLFGSLTEEALRSVYGLNSAHEVWLSLAKKYNRVSATRKLDLQRKLQGMSKNQKPMSEYLSGVKSVCDQLDSI
GFPVSDQEMIYGALSGLGKEYESICTVIEHSMDSTPDMRYEDAVFKLVNFDDKLQVHNQAPETTPHLAFHSDRGHYSRGR
GYYNNRGNRGRSSYSTRGRGFHQQFSGSNSSSRPMCQICGRYGHTAPRCYNRFDQEYQSPATLHDALATVRLSDNPQQSG
HEWFPDSAASAHITSDRSQLQSAEPYLGNDQVIVGNGDYLPITHVGSIALQTPKGTLPLQDVLVCPDITKSLLSVSKLTS
DYPCEITFDDSTVLVKDKVTKQVITQGHRNKDLYVLKDVRFQAFYSSRQQATSEEIWHQRLGHPHKDVLQLLSQSKAIVL
NKSSSKSVCDACQFGKSCKLPFLSSEFVSTQPLERIHCDLWGPSPVVSTQGFKYYVILIDNYTRFTWFYPLRLKSEFYSV
FIRFQQLVETQFQHKIMQFQCDGGGEFIGSEFLQHLARSGIKQLISCPHTPQQNGLAERKHRHLTELGITMLYNGRVPQQ
LWVEAFFSAVFLINLLPSSVLSDKKSPYEMLHQTPPLYTALRVFGCKCYPSLRPYMTNKLDPKSLACVFLGYNEKYKGYR
CYYPPTGKVFISRHVLFDENSFPYADMYQRFHKTSRSSLLNAWREAYLLPQSQAPPPNQDIPEELPPRRDVHEAEPVVVQ
DESDSEDEDQNQQVVVEEVVIEEPVQLEEEDPPVHSMTTRARAGIVKPNPRYALFTIKDEFAEPKSVKAALKHKGWTASM
GVEIHNVEETETFELVPPADDQNPLGSRWVFKTKRNADGSVLTLRSRLVAKGNEQEEGIDYIETFSPVVRTATIRAVLHV
AVTKKWALKQLDVQNAFLHGDLKETVYLLQPPGFVDSEKPDYVWKLKKAIYGLKQAPRAWFDKFSSFLLEYGFKCSFPDP
SLFIYHQGSDVIYLLLYVDDMILTGNNNQLLENLLSQLNSVFRMKDMGPVHYFLGIQVHHYLDGLFMNQEKYATDLLVTA
GMSDCAPMPTPLPLKLDKVPGQDIQFSDPSHFRSLAGKLQYLTLTRPDLQFSVNYICQRMHAPSQSDYTLLKRILRYVKG
TLQLGITIRANTDSTLLCYSDSDWAGCRETRRSTGGFCTMLGSNVISWSAKRHETISKSSTEAEYRTMSIAASEIVWLQN
LLAVMGLKQQRTPLLLCDNLSAVCLTANPMFHKRTKHFDLDYHYVRERVALKALEVKHIPASLQLADVFTKSLGQDAFFK
LRSKLGVSLPPIPSLRGDIR
>Copia-50_PIT#LTR/Copia 8-4447 via tfasty with Copia-6_AG, 66.2% SW:1424, 1 stopcodon. [Phytophthora infestans]
MSPTAQPTATNNNTRSDVEDQGGMNARGADVFADAREGPRPNTLGFPDDLRFDEADRESVELHSQLQLIRQLQSELAAVR
TQLDARTLSMSDTSMATAPPTPKKPKIKDVRCPNFKGTEVYPGLGAGFESFIHEFEHAVRTEGLVNGSTWTDEFKASIIV
NFLEGNASRHYHKKNAEWRQRHEGEDMPYSEVKRALLTEFGCKLSQLELSTKMQCYKREGDSWHDYVEYLNFIESLMEGD
QTKLVMEVFGNNACPELAPTLLSSISEESTDYAAETDRMKRLLYKLKGDGRKSGVQRKNRHGDRSKSHGARNHERNNRFI
DHNGGGSHGNNGDYAAKSTPHQNNGQAFATTGNRGEIRCHVCGQPGHKIFSCPVVEQAKRMASSGNANIAAASEECEEDK
DSAHDSDAEAHVWMAVKATKQPEHDGTWTVDSGATHHLCSDRRQLFAMEPAYLSVRVANGNLVPATERGSTVITVTVKGV
KRTILLENVYFAKDIDHNLISVGQLSKKGISCTFGENEKCIIRSKTGKVLAEVGRSPTNSLWSIGIEHGAASFAAMTSST
LRQWHERLGHVNYQDLVRMLDKKLVEGMIATNKNVNFCMNCAEAKQARRAKNTHDTSTSAPMDEPGATLCVDLKTDMTPD
RLGHKHILTIVDHATNFNRVYLLYKKSDAEGNIEDFINEFERQYDIKVKVLRSDGGGEFGSMRLDRFLLNRGIRHQSTEA
GMSSSNGKAERFHRTVMDSARAMLWASALPQRFWGDAVLYASYIRNHLPTRSNADHASPIEALTGKTPSISHILRFGAKC
TSHIAHTAKKSTKKRAEKGIIVGIDTHKKAYKVFIPRTKRMVTTTHIQNIDRIDARAVGRYMDAVDKEQIRGETAAGNGE
QENTRKPYEQTEVNGVQPEDAEGNHEPSARAIQRVFGLNRGARPLPNNDFTLPQSFIDEFSTPVSALLTVSLQGGAALST
LLAGKNITEPTTVKEARCSSQWPEWERAMQEELRAIAENATWEIVDTPIDGNLITAKWVFKLKFDNKGELERFKARLVAR
GFNQKYGIDFGETFAPVLKIASLRLIVALAALWQAVIRQGDVPNAYLRAALDRAIYLKAPEGLKLPKGKSLRLLKSLYGL
KQSGKLWNDEIHNYLLELGFERSKLDPCLYFRRSDGKLTVLGLYVDDVIIVSQRSSDTDWTMEMLNNQFQIKDMGEAKKC
LGICIEQTESGIFLQQSANIDQLLTKLGMENCRPVATPMESTRALETEDSEPFFDTDAMRETIGSLLWLSTCTRPDITMP
VNYLARFVSSPTTAHWTGIKRVLRYLQGSRGLKLAFIKPQGSQQHAKAVIFSDADWAGGKDAxSTSGGLLVMNDMPISWY
SKKQSTVALSTAEAEYIAGATAVQDCLWVKQLLEELNLGKKDTVILNIDNQSAIKNMENDVTTARMKHINIKFHFIREAI
RNKDIEVRYCPTTDMRADILTKPLGATLHGRNVTMLKLVM
>Copia-54_Mad#LTR/Copia 51-4361  [Malus x domestica]
MEEENILAASSENILGXSSVSSSEADGNPNQRLCSILLTEFNYLPWSRAITLALGGRSKLGFINGTIVPPKVGDSKYEEW
FCKDQLVMSWLLNSAQVSEXFSFSESAFDLWKAVKEMYGNQNNAARIFELQKSLSVLNQDGKTFIEHLGRLKSMWNELNL
YRPHTTDPAILLKQAEEDKVFQLLSSLDSTYEDLRSHILMSVELPSLNTVCTIVQREEARRKVMSTKVGDPESRAFVASD
RRFEGKNFKGKKGEMQCSHCGQKNHLRDTCWVLYPHLKPNFSKQTKPGRSANQVPRLQTASTVGNFTSNPSALLSEFTSF
TQKKDESNLHKGNSEASTTELFEQFAKFLQTKVSSSVDMSGILNSFSAALASRKLANVWIIDSGATDHITNIKRYMHDFK
EAVIPQFVSVANGTGVSVLGEGKVKLIDTNVESTALYVPSFPFQLLSVGRLTNSLNCDVIFSPFNVIFQDRITKKKIGEG
MYKDGLYMLSLQPVEARGLQVGFLKNHLLWHRRLGHPSNLVQSHLFKTSENVMTQDCEVCHFSKQTRLPFDVSSTKSCKP
FEIVHSDVWGPAPLVSFDGFRYFVTFVDDFSRCTWLYLLKSKDEVINVFQEFHSLVTNQFSXQLKVLRSDNGTEYMSNAF
TQYLTCHGIIHQTSCVGTPQQNGVAERKNRDLLEKTRSLMLQMSVPKKFWSHGVLTAAYVINRLPSKVLKFKAPLETLNG
RKINLSHLRVFGCVCFVHIQTLHRDKLDPRAVRCLFLGYSSVQKGYKCYDPKRXKLLVSRDVVFDEKTPFFASTRGEDLL
GEEDFLDQIXTPIMEINALPHHFSXPDQPSNNEISIDPVECNSSSDILVDNESTEDTEQNQISSEENLAITPEVITPRRN
PSRNRGKPTWFKDYVSYXSRHPIEKYLEYSRVSSSHAAFLSKISASSEPSSFQEANSQLIWXTAMDEELRALNENKTWSI
TKLPKGMRAVGCRWVYKTKFKSDGSVERHKARLVARGFTQTYGIDYKETFAPVAKMNSVRVLLSVAVNHDWPLYQMDVKN
AFLHGELKEDVYMQLPPGHPQEXEGMVCKLHKAIYGLKQSPRAWYAKLSSVLENIGFKRSNADSSLFVRDSSAGKLVVLI
YVDDLIVTGDSLTEIQRLKGFLHKKFAIKDLGTLKYFLGIEVASSSKGLLLNQRKYILDLLQESKMLEAKPVATPIACKE
KLGLDGDLLIDVGLYQRLVGKLIYLTITRPDIMHAVSLVSQFMHAPRSIHLQAVRRILRYLKGTVGTGIVMRKIGNAHIV
GYTDADWGGSKIDRRSTTGYCTFVGGNLVTWKSKKQSVVARSSAEAEYRAMASTTXELIWLQGLLNDLGFKRTLPMPLFC
DNQAAIYIASNPVFHERTKHIEMDCHFVREKTQSDVIQPVFVRSTXQLADIFTKGLSRVQFNTLLVQLGLMNILAFV
>Copia-51_MLP#LTR/Copia 100-4554 86.4% sim to Copia-75_MLP, SW:5364, [Melampsora larici-populina]
MSSSDSPREREQSAPSPAASESSDTSTITSSSTVHPADDTVSNVFSLSQLIPGTPLTMTTPTTSEDRIKIPELTDGNFPH
WNKRFHFALQTRGLLKFLTEDSPPDNAEGLALYRRQQGRVMEIIVNSLNAANDSLIELTDTPKIAYEKLAKAHGSSGGVL
AAATICEIATARYESGQPLSDFITRIRTLHNQLAQYATEDKEIALSSKLLAIFLLNGLGKEFEFITAPFFADLSKLTVQS
VMDRLVLESAKQSSAGQVSSTATAFSAKSSTTATSSTPANRRIGPGLNDLCNLPNHRGLPHTNKNCHAQNGQQRIRPKHP
TSTSSNTLSESEMAQRYLKIEAAHQAKKNPLPQPSVSNAPTYAAVTTSNQFSALELADDFPDEGFAAQAYVASNEDIAYG
VILADTAATRNICHNKDMFLHMKPISPVKITGISGEPQFAHHIGSIIIPGFSEDSHQPMDILIPDVLYVPTMVVNLLSLS
QLCSNGASFSGSDTSITVVGLSGNGYFVCRKTVDERLWQCKVRLLSSDFVFSASAERWHHRLGHLHYDGIRRLASDGSIK
VSSSLSSAARSPCITCQQAKISRLPFTSHFPISSTILNRIHSDVVGPFPSSLGGAKYLVSFIDDCSRFASIFPIKNKSDV
FDCFVRFKTRVELLLDSKIKFLHTDRGGEYQSSNFLSFLSQHGIALEQGPAETPEQNSISERYNRSLVERIRCNLHYTSL
PTSLWAEVALATAFTLNQSPHTFLHYQSPLSVWNSFIRDTGIHGPDHSFLRTIGCSAIYLAPRISGKLALKGREGVLIGY
EAGAKAYRIWDLGYKKVVVTRSVIFNEDIFPFSSLPSTTNCPSFIILEDSGYDIPDNVTYNAPVLPITPRVAHDSQISSP
ITGPILKPLLLSSVSPASSPPSISRRNRSIAIPGNSCIVEGSPNSSNSATTKGKVDRPARATSKPQRFGNFIGHAGTDSN
DEPTYKQAMDSPDADEWKKAMRVEFDSLQHHNVGKLVARPIGARVIGGMWVLKKKRDENGAVLKYKARWVCFGNRQVEGV
DFHDTYSAVGKSDTFRILVSIAAYLKCSVVQFDIMTAFLHGLIKERVYIQQVKGFVEPGCEGMVIELYKSLYGTRQGARD
FSDDLRVKLLAFGFKTSKADDCLFIYRRKSHFIYLHMHVDDGFIVSNSNPLIEEFRLHMLKSYELKWKTKPNLHLGMRLN
YHNDGAISIDQTHYLQDLLERFGMEDLNPVKLPFPVGLKLVHGSPKEVSAAAFLPYQSLIGSLNWAAISTRPDIAYAVSQ
LSRFNSCYTFAHWNAAKHLVRYLKGSISQGIMFRGSLPSDLKGYGDADYANDPLDRRSVTGYLFTFGDAIVSWRSRRQNS
TALSTTEAEYMAISDCARHALWFKALFHDLKLHVSAVSVSSVGEAIQLFNDNRGTVLLSKEPVINNRSKHIDVRYHFIRD
HVRLKNIVTAHVPTKSMPADFLTKPLPIDAFRCCCDQVSSVECSS
>Copia-72_MLP#LTR/Copia 98-4759 via tfasty with SHACOP15_MT, 60.5% SW:1354, 5 frameshifts and 2 stopcodons. [Melampsora larici-populina]
MVARENSTRLTGICHRLWTHHLLPTPLPILTNHLIDNLSKTSQTPIILPLLTALSYHPHQTIPKPSLIMSSQPSPQPTTQ
KDFAVVLNHNLSKLQATVILGKNNYNHWALGIRRSLRTLCLDTYLTSPNKSPDIPDEEHLANKECITNFLLNRMDASNSA
YVESKLQVRNNGEVDLEYEPSKLWTIVRNNKAPISEAAQFQLDNELDEFRQDNRTTLEAHLAKFREMKDELMLAGGDLND
GQLARRLIKSLHPDNQIILSNVFDMVNPLTYDGVEQYILKKEKEIRNLPQFANLYKNQSFHPGAHSMNRNNNHNRSNQFT
RPKCTADRCVCRYGKDECFENPKNQDKKIKWQKELIKKGRWRGQVPNHLQSSSQSKTFQHRNSSNVQEETEINQDFDELT
DAMNSMNVSTDDSQPTVFHIDYFCSNKAVEAKVPSNSFGLADTGSSHHMFNNLKHFDRNSLIPNPDPSKRLNLAGGNDTL
EIQKIGTAYLLDVDGNVMKFENSLYVPHLNKNLIAAGALIKKGVVPSSIHTKPHLFTLNLGKKALFRGFFSGNLMIVKLI
ECPVRQIPSQPSSSATITQSDTLINLHHRLGHPNFAYLQKMIKDKMVDGISEDLDLSKPVDCIACIKSKSERPPFSGTRP
RAQNKLENVHVDLSGIIRGYVNNDYLYYILFTDDFTGMRFVYFLKSKDKASVFNAFRAFITFAERQSERKVKCFTLDQGS
EFFNSLFVPYCKEQGIWLHETAAYTPEENGVSERSNKTITYKARALLQHSNVPPSFCFEAVNTTVYLDNRTVSSAYNNGL
MTPFEGWYGRKPSISHLRTFGCGVEYVIRKSQQRWKISPCTRTAVLLGFATDNFNYRLYDLESKKIVTSHDVTFREDFFP
FRKSIKFQYDHLFSRNEIQDLKDQIPDxNPQxILMTMTILSSQNRPDANPVITPESEPLNDNVGAVPVPEPIPSEQPRSL
NLLRKFYKMMNTTNDQPNVRRSTREGKPLTDLHHRLSMLSGLILMLSFPEKTTNFTPSAPCQLSDLVNEPKTYKQAMKSP
ETEEWKKAMNKEIESINNRKVWTIVERPKDRSVVGGRWVFRIKPNLDGSIAKYKARYVAKGFSQVPGVDYHETYSPTGKP
ASLRVLVAVAALNGWPIHSMDAICAFLNNNLDYEIYMELPENLKKYMRDDMVACLASTIYGLKQSAKYWSDDVTEFLLSI
GFIQSEADACVFYEFQEWNKFSAMYVHVDDMAITGNEIHDIKKLIANRWEMEDLGVSHCIVGIQISRTSEFSYAIGQPAM
IESVLERFGMSDCKPASTPLPADLKLTRASDFEAQDFSRQNLPYRNGVGHLMYLSQCTRPDIAYAVGVLSQHLDRPSRAH
WNALIHVLRYLRGTTHLFIEYNAGDKGLSGNQSWDCPYGFSDADWAGNKDNRRSTTGYVFKFLGGAISWKSRLQPTVALS
STEAEYRATTEAGQEATWLQNLLRSFGFEITQPTRLHCDNLGAIHLTSKTIFHARTKHIEIQYHWIRELVKQGSVELRHC
QSHKMIADVLTKPLGKAPFQWLRKSIGLHHREPTS
>Copia-77_GM_pol#LTR/Copia 123-3524  [Glycine max]
MPSSAVSHLPPSSLERLRAFMDPLSKTSSSCSLTMAGKSSSFLSFNASGTENIWIIDSGATDHMTPHSSYFSSYTFLTGN
QHITVANGSHTPVTGCGNIQLQSSLHLNNVLHVPKLSNNLLSIHKITQDLNCVVTFFHSHCVFQDLATGRTIGIAKEQGG
LYYLQHEDNKECTRQKALTSNHQTSSEPWSSSQIWLQHRRLGHPPFSVLKSLFPFLFTKRSVESFHCDVCEFAKHHRTTF
LPSTNKSSKPFDLVHSDVWGPAPISNISGAKWFVSFIDDCTRVTWIFLMKDKSEVFQLFVNFYRIIQTQFGSPIKRLRSD
NGREYVNQNLSNFLKDNGVVHELTCVDTPQQNGVAERKNRHLLEVARALLFQMSVPKSYWGEAVLTATYLINRLPSRVLN
GVSPTQLMTTFYPSVPIMTSLQSRVFGCSVFVHVHGPHRGKLDPRAIKCVFIGYASNKKGYKCYHPQSRRVYVSKDVTFH
ETESFFTSPPLQGENSLEAEIPELSCFPLLQDSTPTEDDKDPEPASSPVQHKEDRRFGNQYQRRKKPDLVQQQLQSSEPE
VRTHTLEDTLDASCESNLDDLPIALRKGKRSCAKYPISQFVSTKNLSLQHQSFISAIDSIRIPTSVQEALKDENWVRAMN
EEMGALERNETWEIVERPKDKKAVGCRWIYTVKYQADGTLDRYKARLVAKGYTQTYGIDYEETFAPVAKMNTVRIIISLA
AHFGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGATNGGNKVCRLKKALYGLKQSPRAWFGRFTQAMVSLGYKQSQGDHT
LFIKHSQDGKLTLLLVYVDDIIIAGDDELEKQTLRERLAAQFEMKDLGKLKYFLGIEVAYSRQGIFISQRKYILDLLKEA
GKLGCKTTGAPIEQNHRIGNDEESPKVEKTQYQRLVGKLIYLSHTRPDIAYAVSVVSQFMHDPRERHLQAVNRIIQYLKS
SPGKGLLFKKEKNLSMKVYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLWMKI
ILDDLKIKYEAPMGLVCDNKSAISIAHNPVQHDRTKHIEIDRHFIKEKLDSGLIATEYIPSKLQLADMFTKGLPTEQLQD
LTCKLGMIDIHSPA
>Copia-77_BRa#LTR/Copia 55-4010  [Brassica rapa]
MGDITTVVKPKVGGGPSTISCPMLTSTNYTVWAMRIKVLLKVHKVWEVIDDESSDIEKNNLATALLFQSIPEVLILQVGE
LSSAKQVWEAIKARHMGADRVREARLQTLMAEFDRLKMKDTETIDDFVGKLSEISSKAASLGENIEETKLVKKFLKSLPR
KKYIHIVASLEQVLDLKTTTFEDIIGRLKAYEERVAEEEEVQEDQTKLMYANSEHQSHSNNNYRGRGRSGRFYNRGRGRG
RYNYNYDRDMTKITCFRCDKTGHFAMDCPDRLLKLQEACETKDEGTQEAEDLMVHEIIFLNEKNIHLSDFETNSVGENIW
YLDNGASNHMTGNQDYFKTIDETITGKVRFGDDSRIDIKGKGSVMFLNKNGEKRILADVYYIPNLRSNIISLGQATESGC
DVRMRDDYLTLHDKEGRLITRAKRSQNRLYKVCLNRDDMKCLQSVSITEAEKWHARLGHIGRDSMSTMIKRDLVTGIPKI
SVEKETCSSCLLGKQTRAVFPKASSFRANNVLELIHGDLCGPITPSTPSSKRYIFVLIDDHSRTDRGGEFLSKEFQEFCE
TNGISRHLTAPYSPQQNGVVERRNRTLLGMTRSILKHMSMPNYLWGEAVRHATYLINRVATRVLNTQTPYQAYKKKKPNV
EHIRVFGCIGYAKIEAQHLKKLDDRSRKLVHLGTEPGSKAYRLLDPINRRVVVSRDVVFNENLSWDWKTLEENSKPGMFK
LSFGDFGNYDDSEDTKEASDNGTEEEEDTPVIAEEEEAPDHIILRRSTRETKKPGYLDDYILLAEFDSERLLLAINDEPW
DYNEAKEEKVWRDACEDEITSIIKNKTWELVDLPSGAKAIGLKWVFKIKRNSDGSINKFKARLVAKGYIQRHGVDYEEVF
APVARIETVRFILALAASSGWEVHHLDVKTAFLHGDLKEEVYVSQPEGYVIKGQETKVYKLRKALYGLKQAPRAWNEKLN
KVLEQLCFSRCSKEPAVYRSREKDHVLLIAVYVDDLLVTGTSCASIREFKARMSTKFEMSDLGRLTYYLGIEVCQTENGI
TLKQERYARKILSEAKMEDCNAIHAPMDPGLRLSKGEEEKGIDETEYRRNIGCLRYLLHTRPDLSYCVGVLSRYMHSPKE
SHGAALKQVLRYLQGTLTYGLTFARAEKTKVTKLIGYSDSSHAVDEDDGRSTAGHVFYIENSPITWCSQKQETVALSSCE
AEFMAATEAAKQAIWLQDLYGEIIGRSRERVMVRIDNKSAIALTRNPVFHGRSKHIHRRYHFIRECVENDLIEVEHVPGD
EQRADILTKALGRIRFKEMRSLIGVEDLKNEEIKLKGEN
>Copia-78_ST#LTR/Copia 140-4749 via tfasty with Copia-74_ST, 77.6% SW:4670, 1 frameshift and 1 stopcodon. [Solanum tuberosum]
MAETNPADGTNPPCIGTNPLYIHPAESAGSTLVPSVFDGTGYRSWRRGILRGISVKNKMGFITGNCVKPPPTDPTYNQWE
RCDDMVVSWILNSLSTDIADSLQYVNNAKELWQELEDRYDQPNGAKHFQIQREINDLAQGTLDITSYYTKLKKLWEELNA
LDASVLCNCACACGAKANSHKVEQDRQLIQFLMGLNDVYTVVRGSNLMMNPLPTIAQGFSILIQEEKQREIRPSNQSIIE
STSLNAGTHNASRNQFRTNYTQHTNVNNSRGYYNQHQNPGASGNQSYRTNKSQTNRSQLFCDYCRKQGHTKEKCYRLHGF
PADFKFTKGRNAGTAAHVHGTGSEPDDNYQNQGQHLTKDQYDQLMQLLDNFQVGNAAEAPQNDVGGAANFAGILACSSHK
ELMSNLSCKCFKSSAEYWIVDSGASNHMSSDRKLLTNTRPxPYPFLVTLPNGYKVKVTEIGDAVLSPKLTLNKVLFVPSF
KYNLISIHSLTVQSNSIVNFSAHTCMLQAPSMKKPLELGKSRNGLYYLCSKCQFASSSSNHVHSLAACSSACGNCSMSNC
KNLVCSMSNCKHSDNKIVDSCTMSSACSSSPNTCIDYLWHNRLGHVPFVKMRNISSIPIRFAPKQPFTCTICPMAKQTRM
PFPTSTSFSSKPFDLLHLDLWGPYHMPTHDHYKYFLTIVDDQSRSTWVHLLSCKSNTLQVIKSFVKLIETQFQATIKAIR
SDNGLEFTSKEATFFYQSKGIVHQKSCPYTPQQNGVVERKHKYLLEVARSLMFQSKVPLRYWGECILTATYLINRLPYTI
LKGKCPYELLYQKKPTYSHLRTFGCLCYPTVTKPHKDKFEPRATPHVFVGYSFHTKGYKVLNLATKTIHVSRDVKFLEHI
FPFDVSFFPSACVPTAILPSSWDNDHANVRNMHTPLFRTDTLEPIGQVLEPHVPGPSPMATPTSPHNFPHPHQPAAPEPR
RSTRHHVRPSYLQEYVCTLPSSKDQDFAQPTNTSTSFNALFTNKHHIPFTALSCDNQQIIRNLSYDSEPNSYDEAAMTPA
WQAAMTQEFEALHANHTWNLVPLPAGKKAIGCKWVYKVKHKADGSVERFKARLVVKGYTQQAGIDYTETFSPVVKMTTVR
TLLSIAVKKGWGIYQLDVNNAFLHGDLNEEVFMEIPQGLEVDSPGLVCHLKKSLYGLKQASRQWYDKLTDALCTKCFIHS
TSDYSLFYKVTPSSTVFVAVYVDDIILTGTDFQEIQDLKSFLHFQFKIKDLGKLHYFLGLEVIYQDDGLIISQRKFTMDL
IKEFDCLGYSPVSSPLDSSVKLHASEGVLLPNPAYYRKLVGKLNFLSNTRLDIAYSVQHLSQFMQAPREPHLKGAIHVLR
YLKGDPTLGLFLSNTPNYELRAYCDSDWASCPDSRRSVSGYLVLLGDCPISWKSKKQETVSLSSAEAEYRSIRKVVGELI
WVRRLLDELTIPCSAPTPVFCDSQAAVHIARNPVFHERTKHIEVDCHFVRDKLQDGLISLHHISTVDQLADILTKALTGI
KHMHLLGKLAVTSPPPT
>Copia-80_SB#LTR/Copia 20-4134 via tfasty with Copia-74_SB, 1 frameshift and 2 stopcodons. [Sorghum bicolor]
MQYDGSVTPPREPAKKKRVVPRRSPAPQKMSTSPQQPSAIEERGDRVRESSLLWPMLTRSNYAEWAMMLQCNFETLEIWD
TIEPGGANVKRARDRQAMAGILRSVPSEMWQMLGAKKNVKEAWEAVKSMRIGADRVKEANAQRLLKEFENIKFNDSESVD
EFAMRIGALAVDLRTSGEDWEAKNCYRLMSSPSSSFNGGKKGWKPKEGGSTGGRGDHVTKKDGTVKYTSEGTPRRKGRCR
NCGIYCHWKEDCKRPQRKERKEEANVAQADHENPSLLLATVDAAQIDRFPVDVKQQEVHLHEKKVYPEDCDEVRNVWVLD
TGASNHMTGRREVLxSLDTSVRGTMRFGDSSLVNIEGIGSVVLQTKNEDHKVLIEVYYIPRLKSNIVSLGQLEEGGCKVV
LEDGWCKVFDSRRLLLARAPRVKNRLYLLEVHVTAPICLMTKTDDQAWLWHGRYGHLNFRALRELGVKGMVEGLPILNCV
EEVCDGCALGKHQRQSFPQVAGYHAKKHLDLLHIDLCGQIKPKTAGGKHYFLLVVDDYNRYMWLELLESKDEAYKCFRKI
KASAETESGVKLRAFRSDRGGEFNSLEFKEYCEDQGIKHFTTTPYTPQQNGVVERRNCTVVEMARCLLKSKGLPAEFWGE
AVTTTVYLLNRAPTKSLQDKTPYEVWHKRRPKVHHLRTFGCLVHVRKVGPGISKLSDRSTPMVFVGYETGTKGYRVFDPV
SRKLHISRDVIFEEGRAWDWKKQTRVDSVDSGFSVEYYSVVGHETVPNAAVQNQEPEAAVGDQSGAGEANWNINTDSQHG
LNPSTPQQSAPAQIEFATPQSGESHDSEGVPLRFRTLENIFDTTEEVGDFEYSGVCYFAAEEPRSVDEALGEQCWREAML
SEMESIEADRTWVLSELPTGHKAIGLKWVFKVKKDPQGKIIKHKARLVAKGYAQRERVDFEEVYAPVARIETVRLMIALA
AQKGWQIHHMDVKSAFLNGDLEEEVYVQQPPGFIAKGGSSKVLRLKKALYGLRQAPRAWNSRLDKELLKLGFEKNPLEHA
VYKRSHKEGYLLVGVYVDDLIITGPSLADIEAFKKEMMRSFSMSDLGLLSYYLGIQVTQKGGVITLCQSSYTQKILESAG
MKGCNPCHVPMENRLLTKNDKSPPVDKTKYRSVIGSLRYLVNTRPDIAYSVGIVSRYMEDPRASHWAAVKQILRYLAGTV
SYGCVYKKLNKSENKLTGYCNSDLADIDDRKSTGGSVFMLGSSLVTWCSQKQRVVALSSCEAEYIASANAACQGIWLSRL
LGGLLGIQTPKVRLLVDNKxAIALSKNLVHHDRSKHIDTRYHFIRECVERGEVEIDHVGTAEQLADILTKALGRVKFEEL
RGKLGVVKVQQD
>Copia-79_BRa#LTR/Copia 57-4547  [Brassica rapa]
MADDSSSVQTPGSVTTVSKTSVPSPYALHASDNPGSLITSVTLTGDNYNEWSTEMTNALQAKRKIGFIDGSIVKPSTGDP
NLELWLSVNSMIVGWIRSSIEPRVRSTVTFISDSYKLWENLKKRFSVGNKVRVHSLKAQIAACRQDGLSVLEYFGRLSTM
WEELAKYKPLLNCSCGAEQKFEEEREEERVHQFLMGLDDSRFGGVCSGIIASDSALDIGEVYAKIIREEQRLLSKRDQEQ
QQSAIGFTTRHDTSTQSSPARGSTESNQNRPRQGSLLCSNCGRSGHEKSNCWQLVGFPDWWEERSSGRGAGRGGNRGGRR
DNNPSGGRGRGAGDYNQNKAPGKAHATTANASVFPEFTTEQWNTLTQLIEERAHTSNTQKLAGKTIIGDIILDTGASHHM
TGNVTLLTEIKRISPCSVNFADGNSTLATHIGLLSISDKITLNDVLFVPNLNCSLISFSRLLKQTNCFALLSDTLCVLQD
RFTRNLIGAGEEHGGVYHFKDVIAAEAHRVSGSEDQNLWHQRLGHPSFSVLSHLPLCFSNNKFVAPSPCDICLRAKQTRD
IFYGSSNKAVQCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDYSRAVWVHLLLEKSEVKKVLPNFCKMAEKQLGKHVQTVR
SDNGTEFMCLAGYFRDNGILHQTSCVDTPQQNGRVERKHRHILNVSRSLLFQGKLPVSFWGEAVLTAAHLINYTPSDVLN
GQSPYEVLYGSKPSYEHLRVFGSLCYTHHRARSKDKFSERSRKCIFVGYPFGKKGWKVFDLESRKFFTSRDVVFHETEFP
YSTMVSDAPLPAITVVSPSHFEDDDWLLAPPPITKEDRGSISEDRGSTSKDRGSKLTNKGIMFDDTANFSEEEYNPLADI
SFTDDDDTDKTVPSSTTSATEIVQHQTPPEDLGRGQRTRAPPSKLQDYVLYNAVAPNEPHLAPSGFESWPYETVQGKTPY
PLTDYVSDSSFSPAHRVFLAAITSGFEPKSYKEAIKHDIWKNSMKDEIVAMEENETFEVASLPPGKVPIGCGWVYKLKYN
ADGTVERPKSRLVARGNRQVEGEDFDETFAPVVKMTTVRTILSLVAKKGWEAHQMDVHNAFLHGDLEDEVYMTFPPGFTH
TDPSKVLRLRKSIYGLRQAPRCWFSKLQTALLQYEFVQTYSDYSLFVYSKNGIELLVLVYVDDLVICGNDVPTILSFKAY
LGKCFRMKDLGLLKYFLGIEVSRSAEGIFMSQRKYSLDIVAESGLLGCKPALTPIEQNHKLGRTESPLFDDPTKYRRLVG
RLVYLRMTRPDLSYSIHLLSQFMDKPKVAHWEAAQRVVRYLKGSPGQGILLSAKCDLQLRVYCDTDCASCPLSRRSLTAF
VVFLGQSPIAWKTTKQDTVSHSSAESEYRAMSAATREIKWLMQLFTEIGNPLPEPVHMYCDSQAAIHIAANPVFHEKTKH
IEKDCHNVRDAVTAGRIKTIHVRTNNQLADILTKALGYPDFVKFLPKLGVLNLHTPT
>Copia-75_BRa#LTR/Copia 48-4159  [Brassica rapa]
MGEIVATSKTKIGSSSIQCPMLTDTNYTVWTMRMKVALKVHKVWETIEPGEEEGEKSDIARALLFQSIPESLILQVGNLD
TSKAVWDAIKSRHIGADRVKEARLQTLMNEFNRLKMKETDSIDSFVGKLSEISTKSASLGENIEEPKLVKKFLSSLPRKK
YIHIIAALEQVLDLNNTNFEDIVGRLKAYEERIYDDEDEKQEDQGQDKLMYTDSQPQHERNESWRGRGRGGRWGNRGRGR
GRFGYQQNGYQQNGYQQNGYGYYRQERDASKVECFRCDKIGHFAQNCPDRLLKLQETQEVEDKTQEAEELMMQEVVFLNE
RNCTPSKFESNLAVENQWYLDNGASNHMTGNRTYFSKLDQRITGKVKFGDDSKIDIKGKGSILFTTRNGERKILSDVYYI
PDLKSNIISLGQATESGCEVRMKEDKLYLYDRDNKLLIKAKRSRNRLYKVIMEVENVRCLQTIQLKESTKWHARLGHIGL
NNMKTMMAKKLVAGLPKFSIEKETCVSCLRGKQIRKSFPQASSYRATSVLELIHGDLCGPITPPTAGRNRYVFVLIDDHS
RYMWTILMREKSEAFTKFQRFKSIVEQEAGTTIKTFRTDRGGEFTSREFNDFCVESGIKRHLTAPYSPQQNGVVERRNRT
LLEMTRSILKHMNIPNWLWGEAVRHATYLINRVSTRTLEGLVPYECYKGKKPNIDHLRVFGCIGYVKIDQVHLKKLDDRS
RALVHLGTEPGSKAYRLLDPATRRVVVSRDEERGWKWSETEKTGETESELIDFGFKMLGDQATQDDEGENHEATKVEEND
ESPMEESTIPLRRSTRISHIPKYLEDYELLCEEEGFETLCEVEYEHMLLLVNEEPWSYEEARDLKVWRDACDDEIESIVK
NNTWTLVDLPPTCKAIGLKWVFKIKKNSDGSINKFKARLVAKGYIQKHGIDFEEVFAPVARIETVRLIIGMAASHNWELH
HLDVKTAFLHGELKEEVYVSQPEGYEIKGSETKVYRLKKALYGLRQAPRAWNEKLNSVMQDLKFVRCLKEPSLYRKEKKG
DLLVVAVYVDDLLITGSKIEMILEFKRDMAKRFEMSDLGRLSYYLGIEVKQREGGIVLSQERYAAKILEEAGLKGCNAVH
IPMDAGLKLSKAEEERGVDERDYRRNIGCLRYLIHTRPDLAYSVGVLSRYMHAPKESHRVALKQVLRYLQGTLGYGLEFK
SRSEKGLIGYSDSSYNVDPDDGKSTTGHVFYLGGNPITWCSQKQEIVALSSCEAEYMAGTETAKQGVWLQELLEEIYGRT
GDKVVIRIDNKSAIALAKNPVFHGRSKHIHTRFHFIRECVEKNLVSVEHVAGVKQKADILTKALGRIKFKEMRDLIGIQD
VSNGDFKIKGV
>Copia-73_GM_pol#LTR/Copia 68-3649  [Glycine max]
MENRSNESDSAPHMQDLSSILTPERLDGTSYPEWHQKGKKVESPKDNSTAATGFVAKSGTFQPICGFSVATKGSDWIIDT
GATNHMTCDRNMFTQFSSNSSVSVIINANGVSSPVMGSGTISISPLLSISNVLFVPSLNCNLLSVSQLTKSHNCVFLFFP
TYCTLQNIHTKEKIGSGKRSEGLYYLEGNSQYTKGKALARSISDETQAKNKRDIWQWHKRLGHPSFSYLKRLFPSLFNHC
HISDFKCETCVMAKSHRVTFPINNNRANAPFSIIHSDVWGPAPLPTHNGMRWFVTFVDDCTRMTWLYLLKRKSDVCNVFQ
VFHKMISTQFNTPIKIVRSDNGGEYYKNELTNFMKSVGILHQTSCPNSPQQNGVAERKNRHLLEVTRSLLIDGNIPSYLW
GEALSSAVYLINRVPSSVLNFKRPLDALSHHFTLNFVNHLPPHIFGCVIYVHLHPHQRTKLESRAMKCVFVGYDTTQKGY
KAYHPSTKRFFVSMDVTFHEHEMFFPLKTLHSSPQRGGDLEVQNHDRLDQDIRLFDVMPTTTDDGIQDNGDENMEDQIQN
NVNENMVEDDSIISPSTSNPLLIQSENNFVEVSPETLTPFHSVADTRNYVSTDIQCDVSSTPNSDPIVSPYTLPPRTNRG
QPPIKYEPILNCKVKYPINNYVSSEKLSKSYVNFVSQLSTAFTPSSLQEALADSRWIQAMKTEMEALEKNATWELVTLPD
GKSTVGCRWVFTVKHKADGSVERYKARLVAKGYTQSFGVDYQETFAPVAKLNTVRVLLSLAANQDWPLLQFDVKNAFLHG
DLMEEVYMDPPPGIPKYSNIPLVCKLKKALYGLKQSPRAWFGRFTKSMKFFGYTQSNSDHTLFLKHNQGKITALIIYVDD
MIVTGNDPDEILSLQRHLASEFDMKQLGDLKYFLGIEVARSKHGIFLSQRKYVLDLLAETGMLGCKPIDTPIEQNHKNFH
CADATSADRGRYQRLVGKLIYLSHTRPDIAYAVNVVSQFMHDPKKPHMDVVERILRYLKSAPGKGLLFSNHGHLKVEGYT
DADWAGSADDRRSTAGYFTFVGGNLVTWRSKKQQVVARSSAEAEFRGMTVGICELLWIRSLLKDIGYEQKDAMKLYCDNK
SAIEIANNPVQHDRTKHVEIDRHFIKEKIEDGIIAFPFVKSEQQLADMLTKAVASKALSNSLDKLGMCDIHAPT
>Copia-72_ZM#LTR/Copia 33-4457 via tfasty with Copia-112_SB, 88.9% SW:5685, 1 stopcodon. [Zea mays]
MSHKSPSMKRPTDDSDGENKVRPLRSPPRRRGRSYSRRRSGSRIVERVIERPSANVAWPMLTRTNYSEWALVMQVNYQTL
RVWDAVEIGIDEDADENEYQKNRQAMAGLLRSVPSEMWATLGRKQTVKEAWDAVKVLRIGDDRARDASAQHLRREFGAIV
FKEGETVSEFGIRISTLATNLRVLGDEITDAEVVKKLLQVVPERLSQAAVSLEMFLDLNKASIEEVVGRLRVFEERGRPK
EITDSMGRLMLCEEDWEARRKARREEESSGGRSSSGSRGRGRGGGRGHGGDGSTPRDGRFGQISGHGGGRPPRGTRCDSC
GKVGHWAKDCRGKKKAATHVAQAEENDRDHALMYIAADQEVFTPLAVKMQRHVHISEPKVLLHLSQEQREDAGVPRRWVL
DTGATNHMTGTRHIFAELDTAVTGSVRFGDGFVVAIEGKGTVLFACKSGEHRRLEGVYYIPRLTTNIVSLGQMDEDGYAI
NIEGGVLRLHDPQHQLLAKVQRSPNRLYLLDMTIAAPVCFMARIGDVAWRWHERYGHLNFQALRKLGREKMVHGLPTVNH
VEQVCENCVLAKQKRASFPKVAKYRAQEQLELIHEDLCGPVSPPTPGGNAYFLLLVDDMSRYMWLTLLRSKADAPAAIMT
FQAKVERETGKKLKVLRTDNGGEFTSVQFGEHCAGEGIQRHFSAPGTPQQNGVVERRNQMVVGTARSILRARNMPGHFWG
EAVHTAVFLLNRAPTSALDGITPFEAWHAKKPPVHFLKVFGCVAYVKKVRPHLSKLDDRGIKVVFIGYQDGSKAYRFYDP
IANRVHVSRDAIFAEDERWDWGASSDVDCEHPFTISDHYMLERQHQETADREQLMSDHQGSPSHSLSPGGGSSQDAPPCS
ATRAASPAAQSPQQAEQLPSTPAHAGTGIEFVTPLSTDPSFDDDDVGERRYRTLDNIRCVGAAAGPMHHGDEEAELHVVS
VEEPRTLKEANGDPSWVAAMQDELSSIRDNRTWSLVELPRGHRAIGLKWVYKVKRDENGNTVKYKARLVAKGYVQQPGID
FEEVFAPVAxQESVRLLLAIAAHYGWGVHHMDVKSAFLNGELQEEVYVQQPPGFVDEKHRHKVLRLHKALYGLRQAPRAW
NQKLDTELVSLGFTRCVDEHGMYTRVKGGVRLIVGVYVDDLIITGGDAVDVAKFKVQMKNIFKMSDLGLLCYYLGLEVSQ
GKQGITLRQSGYASKVLEKAGLAGCNASATPMEPKLKLLKDGMTSSVDATEYRSLIGSLRYLCNSRPDLGYPVGYLSRFI
EAPHQEHLAAVKRVLRHVAGTLDWGLHYRPGQKNGGALKLLGYSDSDLAGDVNDRKSTSGLIFFLAGGPVAWQSAKQKVV
ALSSCEAEYIAAAAAACEAVWLSRLLAELVGGAVLAPKLKVDNKSAIAPMKNPVHHDRSKHIDVKFHFIRECCDRKLINV
EFVGTEHQLGDILTKALGRTRFQELRGWIGMEKLV
>Copia-74_GM#LTR/Copia 41-4537  [Glycine max]
MEKNAATGENSSTTSTNSGGNETVSSPIISDSLSMGTNLQLVIQKLNGKNYVEWAQSVKLALDGKGKLGYLTGDTSQPGV
TDPSLPRWKSENSLIIAWLINSMDSSIGKPYLFLPTAKDVWEAVRDCYSDLENSSQIYELKTQLWQSKQGDKDVTTFYNL
MVTLWQELDQCYEDDWENPNDATRFKKREENDRVYMFLAGLNQELDEVRGRILGRKPLPSMREVFSEVRREESRRKIMLR
NSDGTRMQEAESSALVARGHEPEGEKKKRPWCDHCRRPWHTKETCWKLHGKPPNSKKKPTGEGRAFQTSNAENVEQKGNS
ESSPFTKEQLEHLYKLFTTKMSVTPSSSLAQKGISFSAALLSSKPDSKAPWIIDSGASDHMTNCSKLFSTYSPCAGHKKV
KIADGTFSTIAGVGSIPVSKTLTLHNVLHVPNLSCNLLSISKLTQDLNCLAIFYSSTCKFQELSSGRMIGSSKEVDGLYL
FEDESGPKEKLQKNCLNSILIHEDEEIMLWHYRLGHPNFLYLKHLFPDLFKNKNPNLFSCEICQFAKHHRSSYSPKDYKQ
SSPFTLIRSDVWGPCRDPTPNGKRWFITFIDDHTRITWVYLMKTKSEVESIFKTFFQMIQTQFQVKIKVFRSDNGREYFN
KHLSKFFLENGIIHQSSCVDTPQQNGVAERKNRHLLEVARALLFQNKAPKYLWGEAILTGTYLINRMPSKILNFRTPLDV
FTSAFPNNRLSCTLPLKIFGCTVFVHIHEPNQGKLEPRAKKCVFVGYAPNQKGYKCFDPTSKKTFVTMDVTFFEKTPFFS
DRLRGGRQEEDVQYFQTQNLDFSESSDFLENLEEADIGKAKNLGESNQSSQDSHENDISETVLSKPEVENETIRVGNKGI
QPFDRVYLRKKRPQRIEPNDSRNCQSSEDPSGKNPSSFVQPVQNTVESESVLTVPDLVEPIFDNSDLPIAVRKGVRSCTK
HPISNFISYEKLSPTFRAFTCELTKIEIPRDIQEALRVPKWKEAVLEEMRALEKNQTWKVVDLPRGKTTVGCKWVFTIKY
NADGSVERYKARLVAKGFTQTYGIDYSETFAPVAKLNTIRVLLSLAANLDWPLQQLDVKNAFLNGDLEEEVYMDSPPGFE
SQFNQKICKLQKSLYGLKQSPRAWFERFAQFIKKLGYSQCQSDHTMFVKHSSEGKMAVLIVYVDDIVITGDDYREINNLK
ASLAGEFEIKDLGSLKYFLGMEVARSKKGIVVSQRKYILDLLKETGMMGCRPANTPIDPNQKLRSEGKGDPVDTTRYQRL
VGRLIYLSHTRPDIAFAVSLVSQFMQSPHEEHLEAVHRILRYLKSTPGRGLFFKKTGQQAIEVFTDADWAGSITDRKSTS
GYCTFVWGNLVTWRSKKQDVVARSSAEAEYRAMAQGVCEILWLKRILEELQLPMTLPMKLYCDNKAAISISQNPVQHDRT
KHVEIDRHFIKEKVDAGLICMPFVPSSQQVADILTKGLFRPNFEFLVSKLDMLDIYAPT
>Copia-74_ST#LTR/Copia 111-4877  [Solanum tuberosum]
MAIPGDSAQSSDSVVPSIDSNHPLYMHPSDNPGAMLVSVPFAGIGYRSWRRSVLRSLSVKNKLGFINGECRRPKSIDPTY
RQWERCDDIVTSWILNSLSKEIADSVEYVVDSTELWKELEDRYEQTNGAKLYQIQKEINDTSQGSLDITGYYTKLKKLWE
ELSTLSAKANCTCDCTCGAKAIVHKVEQDRRLIQFLMGLNEVYTIMRGSILMMNPLPSMAQAFSLLVQEEQQREIKPANH
PNLESAALHVGTSRSSNYRTNYTTNTSKPSLQYKDKFCDYCKRTGHLVEKCYRLHGYPSNSNQTFNRQSSNPNSNKPVPN
QRNNDYQGSNQRFNNVRGGHNPQGIRFKGNGHRAVANVHCAQDSENGKRSADNSNHEEMYSVNLTKDQYGRVQDMLQHFQ
GEHGDDGNSNFTGGTVDFAGTIVCTSSIDFGKLSCECFKNKSDSWILDSGASNHMTFNISLLHNIITLPYPILVVLPNGY
KVKVTQIGSVTLSPMISLKKVFFIPSFKYNLISIHTMTSHSNCTVSFNKVSCYMQGPSMKRPLVIGRAEDGLYFLCPKCV
QSSNPSSSLFLKDSTSSSNLNLCNSCKPHVAADTSCLKNHKCTHYPEKGTLRNKDFVAKSHVPSFSASPSHLHNTVSDHH
AHAKNDVNVLWHNRLGHVPFVKMKCISTIPASFSPQQPFMCSVCPMARQERLPFKTRTFLTSFIFELLHVDLWGPYHTPT
HDHFKYFITIVDDFSRSTWTTLLSSKSNALQALKVFVAMIENQFNTTVKTVRTDNGLEFVNSETTLFFQTKGILHQKTCP
YTPQQNGVVERKHKHLLETARALLFQSKLPIKYWGDCLLCATYIINRLPSTVLKNKSPYEALYNKKPFYSHMRSFGCLCY
PTVPIPHRTKFEPRTTPHIFIGYPFETKGYKVLNLSTKRIHVSRDVVFYEHIFPFHTNSTPSIPSSVLPSVPFVDIFDHT
DSPTTCISQTNLGESPVTCNLPSEPIIHSPLPSTVSRILEPPTAPDHVAPLIDVSVQPRRSTRTLKTPTHMTDYVHSIPQ
LKSPKSISLQALFTNHHYLAHTALHPNSQTFVRNVCIDREPSSYKEAAIDPAWQHAMTQEFDALHSNHTWDLVPLPHGKK
AIGCKWVYKVKHKADGGIERLKARLVVKGYTQQAGIDYTETFSPVVKMTTVRALLITAVKQGWDLYQLDVNNAFLHGDLH
EEVYMEVPPGLAVSSSTLVCKLNKSLYGLKQASRQWYAKLTEALCSRGYTHSMYDYSLFYKKKGTSAVYVAVYVDDIVLT
GTNKAEIDDLKLYLDKRFKIKDLGLLNYFLGMEVLHTAGGIIISQRKFVLDLLKEYDCLHCSPLSSPLDPTVKLRAHEGP
ALNDSTYYRKLIGKLNFLSNTRLDIAFSVQHLSQFMQDPREPHLQAAFHLLRYLKSDPTLGLFLSKDADFTIKGYCDSDW
ASCPDSRKSVSGYLVLVGGSPISWKSKKQETISLSSAEAEYRSLRKVVGELVWLSRLLGELNVSFPRPIQVFCDSQSAVH
IAKNPVFHERTKHIEVDCHYVRNVLQEGLISLHHIATHDQLADILTKALTGIKHSLILDKLAVLFPPPT
>Copia-74_Mad#LTR/Copia 83-4414 via tfasty with Copia29-PTR, 2 frameshifts. [Malus x domestica]
MAASTSSTTPSSDIFPSVSHAISIKLDSSNYPLWLAQLLPVLRSRQLLAFVDGTSICPSAFLSDATGNASPKPNPAYADW
VQKDQLVLSWINGSLGHQALAATARHSTARDVWVALQQRFASTNQSRILQLRTAFFQTKRGDSSISDFLDKINGIADQLA
LAGAPVSPDDMVPVVMSNVGPKFENTVAAAQARDKPISLPDLEALLLAAELRLADPPAPPDSSVSALVASRGSSASRGRS
SSDRGGDRGSGRFSRGGGRPQHDGSRNNGGDGYRGYRGAGGFHDRPFRDRGGGRPQHDGSRFRGSNNASGVLGPAPSHGS
SRPRCQICNTFGHGALDCAQRLNLAYEGRPPSSRLTALTAQHSQPWLLDSGANSHITNDLNTLSQSRDYRGGDSVGGVVG
GTGLPINRIGSSTLSHNNISFKLNDVLHCPDASTSVLSANRFMLDNNCYITLFPSCFYIQDMETGTILFSGKSSNGFYPF
SSSSPTAHGRAAFLGVRVGSDVWHSRLGHPSSSILKFLFSRHSNKLPVSGNLNLNTFMCHSCPLGKSVKLPFSASLSVTH
APLELIHSDVWSASNKSVSGFQYYVLFVDNFSRYSWIYPMKLKSEVFNIFTHFKTLVENQFSTKIKMFQSDGGGEYTSHQ
FKHFFLHHGIHHRLSCPHHPEQNGLAERKHRHIVDTGLTLMAHASMPPAYWAEAMHTAVYLLNRLPSKVLGFMSPYQKLF
LKEPDYSFLKTFGCACFPYLRPYNNNKLQFRSTKCVFLGYSLNHQGYRCLDISTNRIFLSRHVVFDEGNFPFKAISGSLA
PSSPASSPPPVLEITGPLPRAPRLSSSQPVVVSPSLETHQSSPSSDPPQPALQVYSRTLTGGFFLLHKQPPSVLPPASAV
HSDAPPEAPSAAVPPAVPSTSHGMLTRSKTASLKPPKYVFSAAISSTGPIEPTCFSQANTFPEWRTAMADEFNALQRAGT
WTLVPRTASMNILPNKWVFRIKQNSDGSIQRYKARLVANGFHQQPGLDYGETFSPVVNHSTIRLILALSVQFQWPVRQLD
VQNAFLHGSLSEEVYMHQPRGFVDPQFPHHVCRLRRSLYGLKQAPRAWFQCFSTHLEDLGFRPSTADHSLFTYIHGSTRI
YLLIYVDDILVTGNNPSHIVTLIKNLGIRFSMKDLGPVHYFLGMEVVRTPSGLSLSQQKYATDLLHRTKMHGAKPVPTPA
VSGRRLSLQDGDPLPDPTEYRSVVGALQYLTLTRPDINFAVNQVCQFLHQPTSTHWAAVKRILRYLVGTTSHGLIYKPGS
FRLTAFSDADYAGDPDDRRSTGGYCLYLGSNLVSWSAKKQNGVSRSSTEAEYRQLAIAAATLSWFRMLFRDLQFPLHCPT
LFCDNISAISLASNPVFHARTRHVEVDYHYVREKVVRKELDVRYLSTHDQIADIFTKGLSLPRFRLLVSKLPVLDCTVSL
RGRK
>Copia-35_SB#LTR/Copia 100-5133 via tfasty with Copia-48_ZM, 2 frameshifts and 2 stopcodons. [Sorghum bicolor]
MATPSSSPKAADESSVTSQAQAEALAKRQADDLANAAAAEAQRAERERLAARDAALARAQEAEAEAAAAAEERDAAAQRA
RDALDRAAQARAAAEAAAAPTGPPDPPPADGAPSPDLRAAMLHHEAVALLQLHSQAVAVNNIRNHVTTVLDVDSGNFNRW
SDQFLLILGKFSLRDHVREEPPVPMSPDWDRMDCVVKAWIIATLTDDLAEIISAxGSTARHAWLAVQSQFLGNREARSIH
LETRFQNFVQGDLSITEYCRQLKKMADDLIALGEPVPDQTLVLNVIRGLNERFSHVGTLLRRARPFPTFLEARDDLILEE
LTLATRKDAPATALTATSTPNTSNTTSASGSGGAGGGSKSSNYRRNKRGGNNKGSSNGGGGQGQRPPAGGAQQLSSSAQQ
QQPAPGGRSWPSYYNPWMGSMQMxPGGPRPPLAPIPVPPPYSAAAGATAGAAAGSTCAAATAGPHQPQPGCCCLRRRCTL
GCPRYYNPVAGLPSWDPTTLASAFSTTSLTPPPSSDWYFDSGATSHMTSQSSSLSHILPSRYPTPSSIVVGNGSIMPVTA
TGSIELSPSLRLNNVLMSPQLIKNLISVRQFTINNNCSVEFDPAGCSVKVLPSRTEIVRCNSSGPLYPLRLPPARSLVAQ
ASSPLWHRRLGHPGHEALSKLASSTSCHISDCSDLCHACQLGRHVRLPFSASTSRASNKFDLIHCDLWTSPVVSVSGYKY
YLVILDDCTHYLWTFPLRLKSDTFSTLAQFIAHVSTQFDTRVKSVQCDNGKEFDNSSTRHFFLAQGIHLRMSCPYTSAQN
GKAERIIRTINNVVRSLLFQASMPPSYLVEALSTATVLLNILPTKTLQLSTPHFALFTKLPTYDHLRVFGCKCYPNLSAT
APHKLAPRSALCVFLGYSAHHKGYRCLDLSSNRVIISRHVIFDETAFPFAERHGPSTPADLEFLDFTDDVVPAPIGHSPT
LFPAGLSPSTSGAPVVPAGPRVAELGTPPGVTSAPAGPSVTVPGAPDVADDDAPVPALYVPPALRSPGPPSAPRAAMSSS
SPAPRAAPEMGTSPRHLYVPPALRAGASPTTTGSAPPLAPRGPPPGFPPLRPERLFVHHYSRRPRPLAAPAPAPAPAPSV
VPAPTPPVSAAPLPKGAVPVRPVSNQHAMGSRSKSGFRMPAAYHTGYLSPVPKTFRSALADPNWRAAMEEEHHALLQNDT
WDLVPRPPRANIVTGKWIFRHKFKSDGSLERYKARWVLRGFTQRPGVDFAETFSPVVKPATVRTVLSLALSRTWPIHQFD
VKNAFLHGTLNETVYCQQPSGFEDPTRPEAVCLLKKSLYGLKQAPRAWYTRMATYLLSIGFVEAKSDTSLFIYHRGSDTA
YLLLYVDDIVLTASSAGLLRRIISALQREFAMKDLGTLHHFLGMQVQRSSAGLLLSQRQYMLDILDRAGMAECKPCSTPV
DTNPKIAAADGALVSDATDFRSLAGALQYLTFTRPDIAYAVQQVCLHMHDPREPHLAALKRILRYIRGTLHLGLLLRPSS
STDLVVYTDADWAGCPDTRKSTSGYAVFLGDNLVSWSSKRQNTVSRSSAEAEYRAVANGVAEATWLRQLLIELHTPLRRA
TLVYCDNISAVYMSSNPIPHQRTKHIEIDLHFVRERVAIGDLRVLHVPTSSQYADIFTKGLPSSVFTEFRSSLNVQSG
>Copia-35_Mad#LTR/Copia 83-4258 via tfasty with Copia27-PTR, 2 frameshifts and 5 stopcodons. [Malus x domestica]
MSSEGNYVQAYIPRFDGHYDHWSMLMENFLRSKEYWSLIETGYEEPVKGAQPLSEARQKELDAVKLKDLKAKNYLFQAID
RSILETMLEKDTSKKIWDSMKTKYEGNARVKRSSLQALRRDFETLEMKVGETITNYFARVMTVANKMRVYGETMTDVTIC
EKILRSLTYKFNYIVCSIEESRDLDAITIDELQSSLTVHEQKFHRSSGVEQALKVTTDAKTEGGINSYRGxGCGRGGQAF
NKDTVECYKCHNLGHYQYECPKWEKETNYAEVIEEDDMLLMSYVKLPEQTDAWFLDSGCSNHMCGSQGMFTNLDESFVHS
VKLGNNSRLNVVGKGNVKLFLNGVTHVVHEVYYVPELKNNLLSIGQLQERGLAILIREGVCKIYHPTKGLIIQTELSKNM
MFILRAQTLVSTDVQPARCLHTSSQDLLYLWHRRYGHLSHKGLRILQHKKMVRGLPQLQTSNTTCTDCIQGKQHRNDMPT
KGTWRASQPLELIHVDVYGPISSTSNSGKRYTLCFIDDFSRKSWVYLLTAKSEALHCFQFFxKMVEKEKGLSIKCLRIDR
GGEFTSTEFAAFCKENGIKRQLTTAYTPQQNGVAERKNRTVMNMVRSMLSEKKLPKTFWPEAVNWAIYVLNRCPTLAIKD
ITPQEAWSGVKPLVEHFRVFGSLAHVHVPDVKRGKLDDKSFPCVLLGVSEESKGYRLFDPIATKIIVSRDVIFEEEKQWD
LDVSYEGQIMLDLEWEENEENGEGEERVRENENGSEAREERNVGESSVSESSEETQGCNLNELGEDEGRVYEGKVRRPPS
YLSDYVTGEGLSEDEAHMVQVVPIEDPIHFEEAVKEEKWRQAMDSEISSIEKNKTWSLSELPTGAKRIGVKWVYKTKYNE
HGEIDKHKARLVAKGYSQKHVIDYTEVFVPVARMDTVRMIIALAAQKGWRIFQLDVKSAFLNGELSEEVYVEQPKGYEKE
GREHLVYKLHKALYGLKQAPRAWFSRIEAHFIEEGFQRCDSEQTLFIKKNGEERSSLEGREHLVYKLYKVLYGLKQAPRA
WFSRIEAHFIEEGFQRCENEQTLFTKKNGAGKIIIVSIYVDDLIFTGNDKDMMWEFKKSMMREFDMIDMGSMRFFLGIEV
LQRTDGIFIHKKKYALEVLKRFRMLESNEVSSPIVPGVKIGKDENGITVDETYFKQVVGSLMYLTATRPDMMFVTSLxSR
FMAKPTELHLQAAKRAFRYLKGTMNYGIHYKKGGDGGLFAFTDSDYAGDVEDRKSTSGYVFLLSSGAVTWSSKKxPIVTL
STTEAEFVAAVVCVCQAIWMKRVLKELEYNNEMCTLIRCDNSSTIKLSKNPVMHGRSKHIDVRYHFLRNLTREGSIALIH
CGSEDQVADIMTKPLKFDVFxRLRSMMGVCEI
>Copia-36_VV#LTR/Copia 36-4214 via tfasty with SHACOP3_MT, 68.4% SW:3143, 1 stopcodon. [Vitis vinifera]
MEETSRTTSFLPVSFPHPVSSKLDNHNFLVWRKQILTTLRGHKLQHFLSETSVLPSEFLSSDDETQNHVNPKFQDWEQQD
QLIMSWLLASITDALLTRMVNCDTSAQVWKTLELYFATQVRAKVTQFKTQLHNTKKGDLSISDYLLKIRNVVDLLALVGH
KISVKDHIDAIFEGLPQDYETFIISVNSRLDPYTVEEIEVLLLAQESRIEKNIKIADLSTPSLAHLITTNRNGSPHFNYR
ASTRNSNFRPPTHSGNGMQHFRGNFTQQGRGRHGRGSWKGNNKPQCQLCGRIGHVVMQCYYRFDQSFTGPSQLQGNRPQG
NMAHLHQQLSENFFPGTSSVKPTTAEIIQDNNWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSF
SSSFIPSKTLALKQLLHVPEITKNLLSVSKFAADNHVFFEFHPTSCFVKDLSTRTVLMHGQLKGGLYVFDNTQLKLPLHN
SSCFASTALPSKEPTVPASSTSPFTLWHNRLGHPSSHIVSLVLNKCNLPHLNKIPSLICSACCMGKIHKSPFLHSKSSYT
KPLELIHTDLWGPISTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQLGHKIKAVQSDWGGEYRSF
TQYLTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQASLPFKYWDEAFRTSVYLINRLPTPVLKNKSPLEVLFH
QKPSYSQLKVFGCMCYPNLRPFNHHKLQFRSIPCTFLGYSLNHKGYKCLSPNGNILISRDVIFDEHAFPFAQRQSQKQTT
SSFSSSSTSLPCQTSLPLMVLPSSTSCSTSSPTNPSIFPATSNHNVASQPPPSSAPPFPSHHMITRSKNGIFKPKAYLIS
TTPTSVPEALQLSHWKQAMTDEYLALLRNNTWDLVPLPTDRKLIGYKWVFKVKENPDGTINKYKARLVAKGFHQIVGFDF
NETFSPVVKPTTIRIVLTIALNLQWKVRQLDVNNAFLNGDLHEDIFMHQPQGFIDPVNPNHVCKLNKSLYGLKxAPRAWF
EKLHQALGILGFSSTKSDQSLFINITPTHSTYILVYVDDILITGNNDQFVQHVITQLNNQFALKDLGDIDYFLGIQVKHT
SAGMHLSQAKYISNLLQKTKMLHVKPVPTPMVSNQSLSNSRSAPFSNTQLYRSTVGALQYATITRPDITYSVNRVCQFMQ
APLTAHWKVVKRILRYQAGTLHHGLHLQHSSNSHLNITGFCDADWASDVDDRHSIIGYCLFLGPNLVSWHSRKQHTVSKS
STEAEYRSVATLVAEISWLQSLLRELNISSSTTPVIWCDNLSTVYLSANPILHARTKHIEIDLYFVPEKVLQKQIQIHHV
PSSDQLADVFTKATPNSRFLTIRAKLSVNQSPP
>Copia-38_Mad#LTR/Copia 297-3855 via tfasty with Copia1-PTR, 3 frameshifts and 1 stopcodon. [Malus x domestica]
MMDLLIQIILRTNLSSVGSSLLAHPISALYCFLAPTFSMLGLFWKSVCLLSPRLTSAPNRQANWNPHRPNPSPSHDTRPP
LLPTPSLLPKPPTFEYDGYCQLCEEYGHKARQCPTRGNFAYLATADSPSPTPWVVDSGATNHMTNNPSALTQIQPYTGTD
TIVVGNDHHLPISHVGKSSISSLHGPMLLNDVLYVPAIKKNLLSLRRFCYDNHSFFLVDDRSFRVKDKKTGQLLLIGHNY
GELYYIRAAPHVTPKLVFYGERTISDMWHAHLGHPSTAIFQVLANKYHIAISGTLSSNKKCHICPLGKACRLLFSSRMSM
APSPLDVLHLDVWGPAPVVSNFGYKYYLSIVDDYSRFVWLFPLVRKSDVMTTFVTFKRIIENRLNSTIKVLQTDGGGEFT
SLAFRHFLRDHGITHQLSCPHMPQQNGIVERKHRHVTEIGLCLLAQSHLPQTFWVEAFTTAAFLINRLPLHNLGNVSPYE
KLFAKVPDYRFLKTFGCTCFPHSVPYNKHKLMPKSIPCVFIGYDNNYKGYRCLDVASGKMYISRNVQFDELTFPYKDRRT
DSPHHKQSHQPLFLEPLMHAAAPVFPCHILPTVSDPPPPHSPPTAIAAPIPTSPAAPFQSSASTTASSPQPVPSPDSTPP
RKFGSINALTYDSPRHPLPHGLTTALEDPMFIEPTSYTQTSKFPHWQQAMKEEHDALLHNHTWSLVPATPHMNIVGCKWV
FRVKHKADGSIDHHKACLVAKRFNQQVGVDYDETFSPVVKPGTICTILALAVSQHWSLQQLDVRNAFLNGILHEEVYMKQ
PPGFVDSNHSQYVCRLHKAIYGLKQAPRAWFQRLASFLLNQGFSHSKSDASLFIYHSSTYSLYVLVYVDDLIVIGSNNDV
IHRFIDTICTSFASRKLGDLHFFLGMEVTRRGRQLSLAQSRYASDLLQKFQMDQCKPSPIPFLSSLRLSAHDGDPISDPD
VYRSMVGGLQYLTLTRPDISFAVNQVCQYMHNPKSTHLQAVKRIYRYIKGTVEQGLLFRSPPDFSIQGFSDADWAGSIDD
RRSTSGACIFLGPNLLTxTPKKQSTVSRSSSEAEYRALATTAAEIRWFCYLFRELGIPLRTPPCIFVDNVSALHMAANPV
FHARTRHIEIDYHFVRELLTQGVLQTRHISSHHQIADIFTKGLSRDRLSFLASKLNLHFVPFRLRG
>Copia-37_ZM_gagpol#LTR/Copia 62-5240 via tfasty with PREM2_ZM_49-5983, 1 frameshift and 1 stopcodon. (to merge gag and pol artificially) [Zea mays]
MASNNNVHIGKPPHFDGNNYDYWKIRMSMHLRAMGGKIWPIVRDGFVVLKEDEPSVSDNENILTNDQAMNVFYDALDINE
FNRIKNLTTAHEIWIKLMEIHEGTTIVKSAKLYVCKGKFEQFIMKEDESVSDMFNRLNEIVNELKGLGFNVPDVDFTHKF
LRSLPEKYETIVTMLVRSDLSTTSPTEVLGEILTQDIFKKSQADALSLAKKVKNESIALKAKASKAIEKEDSNDEENESE
SDGDMALFVRKFNKFMKMKRGQPRRGQTSRRNAFNDRKCFECGEPGHIAMNCPSKKKKGKDESDKKKKKYYNKKKDGKAY
LVEWDSDDSSDDDDDDTSSKLNAGIAIKEAPSLFSSPHCLMAKGDAKVKIITDLNDIKDDDDIDDVDDDGYSYDDLVRML
GEADDYMHKEKEKFKTLKELYKNLQVSFEELKTSHNDLKENCEKLADAQKSSIVHEVEVVTKDVGVTCDLLDSLTSEPLP
TNSICDKCKISLNDNIALDESKIIVENEVLVDRINTLTHDLEKAYGGKTKLDFILGSQRCSLNREGLGYVPKKGKNAFVK
QKTLFVKECDKVCHKCHKKGHVKKNCPKFKNVSSTCFEHCYVLSHNAKGVHAKFVGTSIVGNKKKAIWVPKTLVTNIQGP
KQVWVPKRDxFPFVGKYKAGGNHWVLDSGCTQHMTGDMKMFTQMSEEDCSNYDSITFGDNRKGKVKGLGKIAISNDHSIS
NVLLVESLNFNLLSVAQLCDLGFCCNFTVEDVIISSVDGSNLKFKGFRHENLYLVDFSSNEAKLTTCLFSKASLGWLWHR
RLGHVGMKQLNRLTKHDLVRGLKDVKFEKNKLCSSCQAGKQVANTHPNKSQMSTHRPLELLHMDLFGPTSFVSIGGNSYC
LVIVDDYSRFTWVYFLRDKSNVFETFKSFAILAQNQFDFDIKKVRSDNGSEFKNARIDQYCDDKGIKHEFSSKYTPEQNG
IVERKNRTLIDMARSMLAEYNISDSYWAEAINTACHSSNRLYCHKLLKKTPYELLIGRKPNISYFRVFGCKCYILRKGSR
LSKFEKKCDEGFLLGYSSNSKAYRVFNKTHGIIEEAYDVEFDETNGSQDESDNLDDVGGTQLINAMKTMAIGEIKPKEDD
DENSVVVIPSSSTINEEDHQSQQLNETMDTHDQGTSRPSVPPNASTSNYQTVSRIHHSIVKDHPVDQIVGDISKGVQTRS
RIASFCEHFSFVSCMEPNRVDEALLDVDWVNAMHEELNNFARNEVWELVERPKNHNVIGTKWVFRNKHNEDGVVVRNKAR
LVAQGYTQIEGLDFGETFAPVARLEAIRILLAYACAHNIKLYQMDVKSAFLNGKISELVYVEQPPGFEDPKRPNHVFKLS
KALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKRIGKDLFVCQIYVDDIIFGSTNELFCEEFGKMMSKEFEMSMI
GELSFFLGLQIKQLKDGIFISQSKYLKDMLKKFGLENAKPIKTPMATNGHLDLDEGGTMVDQKLYRSIIGSLLYITASRP
DVMFSVCMCARFQASPREIHLKAAKRILRYLKYTPNIGLWYPKGAQFELIGYSDSDYAGCKVDRKSTSGCCQFLGRSLVS
WSSKKQNSVALSTAEAEYISAGNCCAQLLWMKQTLLDYGIIFKNVPLMCDNESAVKLATNPVQHSRTKHIDIRHHFLRDH
VGKGDISIYSIGTDDQLADIFTKPLDETRFCSLRSEMNVIDISNVA
>Copia-34_Mad#LTR/Copia 558-5238 via tfasty with Copia-52_Mad, 2 frameshifts and 3 stopcodons. [Malus x domestica]
MNNPTVKVENLLGMLTIKLKDDNFAKWAFQFKAVLMGYKLFGHFDSTDVCPSKFVLSTDLGVTKEITKAYVDWESTDMAL
ISLLLATLSDEAMEYVLGCKNAHEAWVNLVDRVASVSKSRVNHLKTELHTIQKGTDSIDKYLLRLKNIREQLSAAGEYVS
DNDVIIAGLDGRPKDYAIIRTIILAKESSITLKKFRAQLLGAEKEIDGEINMLSQSLSTLYVKGTGTHPGSSMVNGSSSN
PQNHTHIPASTGGVLSQVPYPLSSQFQPNMQSSQFYSTQQPPDIFYTPAPYGFGFFENSGSYSDTRNQSSNSGFRSFNGS
NSKGQHNYRSNNGYKGKSFHSGGYRQNSNNNGWSGNTDTRMNVVIECQICNKRGHTSANCFHRNNNNSTSGFVIECQICG
KMGHVALNCHHQSNYSYQSQSPPFSITALNAQQSSQFMPTDSWIVDSGASHHMTADVNALAQLTPYEGNETITIGNGSSI
SIKNTGSTTLHTKDKSLLLTHVLHVPKIARSLLSVKQICADNNSWFICDESNFFLQDKKTKEVLYHGKSRPKELFQIPVF
HSAKGVQSTFPTTTALLGQLVKSNMWHQRLGHPTNEVLSCMLIQCSISYKPDDKHSICTSCIQGKMSRLPFHVRTEKCLS
PFDKIHSDVWGPFPIKSVDGYRHYVLFTDEYTRYTxVLPMCNKSDVFSIFVKFYQFVLTQYGVSVMCLQTDGGGxYVSNA
FTKFLDDKGIAQMLSCPYTPQQNGIAERKHWHIIETSITLLTNVALPLEFWYIACAHSVFLINRMSCKSLSMVSPYTLLY
KKLPNLKFLKTFGTAVFPWLRPYNSNKLQTRSTLCVFLGYSSGYKGVICYDLVSKKCIISRHVIHNEMMFPGKQRLQHQV
NAPVVDQKATHSPILVHVPVTQTSSTHEVNQIHSENDRIASSSVDQSETSSSSSGHSQSQSTSGHTLSTTSDTTLLLPVL
SPDQLQVILPLSLNSYPSGIEHTTTSTHVHQSSGIQTRLQTGALSRKNYAAYSATFPEIAYLEVMDDFSSGFSFLVDITN
IEEPKNFKTASVKAEWQRAMQDEFDAIKAQGTWCLVPPPVDRSIVGNKWVYKIKKNPDGSISRYKARLVAQRYSQEQGLD
YSETFSPMVRHTTVRMILALAVQFVWSLRQLDIKNAFLHGELEEEVYMKQPQGFVDSQHPNYVCKLIKSLYGLKQAPRAW
NSKFTIYLPTLGFVTSLSDTSLFVKEDHGDVILLLLYVDDIIVTGSNASKIQSVIKSLAAVFDLKDMGKLTYFLGLHIQY
NQDGFIFINQSKYARDLLKKAGMEHCKPTSTPSKPHTQLLESEGILMTDPTLYRSLVGALQYLTFSRPDIAYSVNMVCQF
MDTPTDSHFHLVKRILRYLQGILTYGLKYTKGEDIFIAAYSDSDWAAYINTRRSITRYVVYLxSNPISWQSKKQSTVSRS
STEAEYKAIALCVADVCWIRSVLRDMHQCLPSPPHLYCDNLSALAICSNLVFHSKIKHLDTDYHFMREKVQKGDLRVQYI
PTEEQVVDVLTKGLHSPVFVKHCHNLSLGSQSAISNITVSS
>Copia-30_VV#LTR/Copia 36-4076 [Vitis vinifera]
MAEKPSTHTKMIEPSSPLYLHPFDNPGATITTCVFNGENYDMGEKAVKNALRAKNKLGIIDGTVNKPKGEDGNELNAWEA
CNSMIISWMFNVIDKSLHSSVAYAQTAKDMWEDLKERYAVGNAPRVHQLRSEIVNLKQEGMTVAAYYAKIKGMWDELNQY
IEIPECTCGAAQAIVKSREDEKAHQFLMGLDDTTFGTVRSSILALDPLPTLGKIYAMVTQEERHRSMARGADRAEITVFA
ARTEKPGGQTNKSGSCTHCGKTGHDVADCFQLKGYPDWWPTRQMGRGRGRGRGRNSYAGRGATSGRVHYANAVAEADTQE
KGQCVGHDVERSIIPGLNDDNFQKLMALLRSGSSNVEKLTGKNKIVEEWILDSGASMHMTGRRDLFDWLRKWETACVGLP
DGTKTVANEMGYVKLSKDLCLKNVLYVPSLKCNLISISQLLKEKDYIVTFTDSFCVIQDRTSRNPIGVGKLKNGVYYYKP
LQGEKVNAVKVEEKYELWHRRLGHPSDRVLASIHSLGNNVMKGIEDYVCDSCCRGKQVRNSFQLSNKRAFEIFNLIHVDI
WGPYRTPTTSGAHYFLTIVDDHSRGVWIYLMKEKSETKEILQNFCFMTKTQFDKPVKCIRSDNGLEFCSGQMMSFYKREG
ILRESSLVNTPQQNGRVERKHQHILNIARTLRFQACLPIDFWGECVLTAAYLINRTPTPILDGKTPYEILFGEKPNYEHL
RVFGSLCYAHKKSRSNDKFDARSRRCIFVGYPYGKKGWKLHDLETKEQFESRDVIFHETIFPFCQSSKGDKEQKFQNNGN
IESYIEDDDVIVKKTCERESEKNIEREKGEENMETGEDQSQGEMLGRGHRQHKEPRHLQDYICYSARSLSTLCSKASSIQ
KVPSGKPYPIANYVTYTKFSVGHRAFLAAINIEKEPRTYKEAVTDNRWREAMAKEIEALETNQTWKVVDLPPEKKAIGCK
WIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAVVVAKRWELHQMDVNNAFLHGNLEEEVYM
KLPEGFKATGKNKVCKLQKSLYGLKQASRQWFAKLTTALKEYGFQQSLADYSLFTYRRGNIVMNLLVYVDDLILAGNDNK
VCEAFKNFLDRKFGIKNLGQLKYILGIEVAKGKDGLFLSQRKYALNIIKECGLLGARPVEFPMEENHKLALANGRLLNDP
GMYKRLVGRLIYLTVTRPDLTYAVHVLSQFMQSPREEHLDAAYRVVRYLKKGPGQGIVLKADNDLQLYCYSDSDWASCPL
TRRSISGCCVKLGTSPISWRCKKQGTISRSSAEAEYRSMAMAASELTWLKSLLASLGVLHDKPMKL
>Copia-30_Mad#LTR/Copia 291-4757 via tfasty with Copia-13_Mad, 4 stopcodons. [Malus x domestica]
MVTASQLQILQSPITALISTIPTSVNIKLDDTNYLNWQFQMQLLLEGHGIMQFVDGSNLCPPRFLVNSSESGIVSGNSSS
QIENDAYVVWKLHDRALMQLITATLSHAAISCAIGSSSACDLWNRLKEQFSTVSRTSIFxMKSNLQTIKKGSDSVSKYLQ
RIKxARDYLSAAGVYFADEDIVIMALNGLPLEYNTFRCVIRGRESVISLKDFRSQLLAEELIVESNVSSQFLSAMVANTN
TISEPQSSSYHTQSHPRHVPYSSSNGSSNGHNGGFKQFANNRQKGKGKFNPGYRYPASRPHFFNQTHVPTSGVLGPSPIV
PFAQSVFCQLCNAYGHTAPFCHSKTVDKSSCQICGKNNHTTWFCFYNDKGPSYIGPQHPSMAPYSYAPSAPQFPSQPAMQ
AMHTMVPSSSQASSSQPSPQLWLADSGATNHMTTDLSNLSLASPYPTNETVQTANGEGLTVSHVGSTVIHTPVHHIKLNS
VLYVPKLSQNLLSVHRICLDNNCWLIFDASCFWIQDKATGRILYKGLCSNGLYPISSLSKHPGSYSPSNVKVSAYLGQLI
SSSLWHSRLGHPTNNIVSTMLNKANIRCSKDDVPIVCHSCLEGKFKKLPFQSSTHQSQIPFEVVHSDLWGPAPCNSIDGF
KFYVTIIDECTRFCWVFPLINKSDFFDTFVSFYAFVKAQFSATIKSLQTDGGGEYISHKLQAFLKVQGMLHQISCPYTPE
QNGLAERKHRHLIETTVTLLQYAKLPSQFWSFACQAAAYLINRMPTPVLNHKSSFELLFGTSPVITHLRVFGCSCFPLLK
PYNTSKLQPKTTQCVFLGYASKYKGFLCFDVLKGRIFISRHVVFDESSFLYQQLLAQSKCVIACASSPASSDIHPSLLLA
AASIPYIISPQPLSTLDSSTLTPTDASSPQSITVSASSSSLLPVDPEFGPNHLQPVLPIAPLNMHPMQTRSKNGIVKKKA
FLSSLSDSSYVDLSLCEPATYKSAIKVPVWYKAMQEEIEALHTQDTWSLVPLPFQKNLVGCKWIFKLKKNSDGSISRHKA
RLVAKGFSQEPGLDYGETFSPVIKPTTIRLILALVAHFNWSLRQLDVKNAFLHGLLHEEVYMAQPPGFEDPTHPEFVCKL
HKSLYGLKQAPRAWNERFTNFLPSLGFASTYADSSLFVKHIGTKIVILLLYVDDIIVTGSASSIIQQVIDFFTVEFDIKD
LGNLHYFLGIQIDRIGTGFFLSQAKYIQELLQKAEMVDCKPCDTPCLPYNRLLKDDGSPFNNPAAYRSIVGALQYLTFTR
PNIAFSVHQVCxFMQALMISHYTAVKRILRYLKGTMTFGISYSASDLQLKAFSDVDWAGDPNDRRSTTGLIVFLGGNPIS
WSSKKQNTVSRSSTEAEYRAISSTSAELDWIQQLLQFLHIQLPTAPVLFCDNLSAIALSFNPVxHQRTKHIEIDVHFVRE
RVAKHRLMVQFVSSREQFADILTKGLSSPLFRSHCTNLMLGSSKPEIKG
>Copia-31_BRa#LTR/Copia 68-4180 via tfasty with Copia-19_EPa, 84.9% SW:4297, 2 stopcodons. [Brassica rapa]
MTMQVKIGSHQFSMTMFDGSGDFSIWKKRLYANLSVQGLKDVLTEKVDEKDEDSETKPEDEDSDSKKKQEESKATRSERD
EKALNLIFMSVGDQVLRKIDKCTTAAQAWSLLDKLYMTQSLPNRVHAQLRVYSFKMQDSRTIDQNMDDFLKMITDLSNLS
IEIPEEVQAILILNALPARYDTLKETLKYGRDTIKVEEVASAARSKELEFKDYASTRSNGEGHYVRGRPYSRHVNFGRNK
NRSRSKSKEGKRVCWICGKEGHFKKQCYKWLERNKGNSGSSERGEASAAVRDDANDLVGLIAAEVNLSFGGLDREEWVLD
TGCSFHMTPRLELFQDFRVETSGRVRMANSSISEVKGSGSVRFRNSDGTTFLLHDVRYMPSITMNLISLGNLEEKGCEFK
GGNGLIKVIKGCTVFMKGQKRHSLYILQGEAVSPEGNISEGSSVKQQTLSEAETRLWHSRMGHIGQKGLEELSKKGCFDS
KRVIDIKFYEACVLGKTHRSRFGAAQHVTKNKLDYVHSDLWGSPNVPFSLGRCQYFISFTDDFSRKVWIYFLKSKDEAFR
SFCDWKKMVETQSERKVKKPRTDNGLEFCNRAFDGFYKEEGIVRHRTCTYTPQQNGVAERLNRSIMNKVRCMLSESGLEK
KFWAEAASTAVYLINRSPSSVLEFRVPEEIWTSIMPALSGLKRFGCVVYIHSDDGKLNPRAKRGVFIGYPEGVKGIRVWL
LDGQKCVISRNVVFREDQLYKDLGKNDKDLAEVLDQDLKVFSFELSETTEMEEGSRQGGANTETKVQTENVQDKSKTDEV
EDLSDYxLAxDRSRRQIAPPAKLDEYECDFLSYDEEFEVIMCLMVEDGGTEPNNYQEALNDPDSDKWIEAAVEEMISLKK
NKTWVLIDRPQDQKAIGCRWLFKRKPGIAGVEDPRHKARLVAKGYSQKEGIDYQEIFAPVVKHVSIRYMLSAVTHFDMEP
QQMDVKTAFLHGNIEEHIVMEQPEGFVDKDHPDKVCLLKISLYGLKQSPRQWNKRFDDFMQLNKFQKSQYDNCVYFKNVE
KRNGIYLLLYVDDILIASQDKVEVEKLKILLNSEFEMKDLGDAKKILGMEIERDRVKGCLWVSQESYLRKVLSNFKMDQC
KSVTTPLGAHFKLKSPSEKEIEEIRGRMEGVPYQSAVGSIMYAMIGTRPDLAYPVGVISRFMSNPMPDHWSAVKWVLRYI
QGSIETRLCFKKKCDFILKGYCDSDYGGDLDQRRSSNGIVFTAGGNTISWRSQLQKVVALSSTEAEYISMSKAIREGVWL
KGLAEELGFGQETVEIFCDSQSAIALSNNAVFHERMKHVAQKYHFGRDLIKKKIVSVLKIATAYNPADIFTKVLPVYKLK
EALKVLRVGKE
>Copia-33_DPu#LTR/Copia 499-4454 via tfasty with Copia-5_DPu, 78.8% SW:4175, 3 frameshifts and 2 stopcodons. [Daphnia pulex]
QTYYLNxSTSIISQAMDDNQVVINAAEIEAWHLRDVTARNYIFATLTKVMKQNLYSCETAAAMWTRLDTQYQLRAAENLH
LLWxSFYDFTHHAGTLTQCKMITPRSHLTSSLSLDDDMTTHIQKLTSISDKLRELGQPLDEMQLVTKALATLPEKFRVVR
SVWASVPLNERTIDNLLQRLRSEENVLKSYEREDAAKDAAYAAKNYNSSRGRGRGRGRGGKPFHQVQEGVINQHKKLDGP
RCGYCFIPGHETHECRKKKRAEAEKREKQDQGLVSSTQSNSTSSLDFFADSGATKHMSDQKHLLQDFTPVTAGTWFISGI
GDTQLEVMGRGNIRATVEVLGKTYSRIINDVLYVPGLGINLFSIAAATEIGLEARFNNNEVTFYRKNLPVLVGERADNTL
YLLNLKPYLYTYGSRTDTALEANLRASLTIWHQRLGHVNHRTIQRMISEDAATGLNLTGERSIPKTLCTACELGKFHRRT
LDVGRTRARQIGELVHSDVGPIPTPSIGNARYYVAFTDDHSGWRVVYFMKKKSEVPALFRQFVASVLNETNNTVRTLRSD
NGGEYVGHEFKKYLAERGIRHETSAAYTPAQNGVSERGNRTLMDGARSLLFASNLPSSLWAEAVAYVVFIRNRLLSSTNN
VTPYEAWYGRKPNLADIRIFGSRAFVRCPNVRKLDQRCEEGAFVGLSDTQKASRIYVASTPPRIVVSHDVKVDETTMYFK
ASTSELSFTSDDWTEKTILDHDTHKSIADLPVLKTSLQDVMDPTPMDTNNNEAEEILPQETIHHHSETTLPNLADPPNEA
AEITTNDGDKVISEDNTTSSPQTGSRRSSRLPAYTESYLEYKRSLANQATILDVSTQIRANNTQPTEPSSYTEAISCADA
EHWIPAIFDEYESLIQNGTWSLCPLPTGRKAIQGKWILKFKPGYKDVAPRFKARFVVKGYSQIFGLDYIETFSPVVKHYS
LRVVLAIAATKDLEMIQLDIKIAFLYGDLQEEIYMEQSEGFVVPGKEDQVCRLLKSIYGLKQASRAWNKKFHDFILKFGL
TQSRADPCVYFRHRREGEDDEEFTVLIIYVDDGIIFSNQKHILTDILEHLKTVFEIRSFPADRFVGVDILRDRSLRTIHI
SQPDYISKIVEKFNMVNCNPLAAPADPSPQNTFFGIRYGGNNTALTGYCDSDYAGDLQTRRSTSGFVFIHLGGPVSWASR
RQPCVALSTTAEFVAASEATKEAVWLKQLLAELGMDHQPTRLYCDNQSAIALVKNPAFHKRTKHIDVRLFHIREVQESGT
VNIEYVCSEQQLADIFTKPLAIPRFEKLRNDLNVVQIPA
>Copia-33_BG#LTR/Copia 93-4772 53.8% sim to TTO1_NT, SW:1047, [Blumeria graminis]
MNKSSAIVLTPGVSFADWESDLQAALIKKGRLAHVFHDFEEIQPALRPSEPIRGEDKTDEEFASISAKYAEKLARWKEGE
IEAKNVLLRRLSPSVRPQNFRRMSARQIFDTIATTREEGAATPYETAVRNLINTKFTTTEEYCDKFMQHYLSVDSAAESM
LHENTNCDSINPFAVPHGLASFLFVLGTESIDWLDTWRQTKVLDGKNKYVPLESMMSTLRQIGQSKVKSSGQVMAMTGAG
ERKDGEKRDTGGPNDYCVLCTHQHKNKNCFKQHPELRPGRKSKKGKPKGKPSVRVAIESSDEEIDSEDISSCRLARAASA
SLIKNPLLYDTGASHHFIRRKNDFTTLTKLRKPFKFDQAVGNSALTHQGTSLVRIGSQTLELDESLLSPNSTCNIISAGK
LKDQHGIVAANANELLIRIKDDQPVARLVTIDHVLYIKPLRNREESAMSNKIAAPGIARIPKVTNAHRWHQRLGHTGQQI
LKKTAQCSLGMDGIDYSDLINCETCHLSKAQRFVSREPRPTPSEPLDEIFVDTVGKLSEAFNGHKYAVILTDARTRMRWS
ITTTGKDEIASQLVQWSEYQHHQYGKRIRIIFRDGGTEFSRMREYCTEKGIRTDVSAPNTPEQNGAAEASNKIILRKARS
MLIDARMPPCFWPWAVEHACFITNRLYCLRTKRVPIVDFLQALKQPHHEKVDFSCLPRFGCQAYKLIDPKPEKFKARAEK
GWFVGFPKNTSKNYLIYHPRWTPKYGWKWIESCTPHVTFNEDIMFGDMLTKSDQQRTYNYWASENPLPVEGMQESTLQNP
PQSDQTRDRFEGEPPSSSVGQRSFGSPDVLNTRDGRTQQPSEEQDMSPPAVPEISGDQETSNQAAPPLVPPQTIHKAPDS
QQLRSDRQELTLSAEDKPVSQPPAVPVIRDGQWPQTSIVNDKLRSSPHRSIRSPSVDSASEYDSEYAPGSPSEKNDQPEQ
RDDTEKASRQSDENQVSLNEGNVQSDQGEIGPVVGHTEPDEEVYDKIMTGWDELPPVAGHKRQHSIEPPMTRSKRGRPIK
KVDYYKLHHGRATRPHGDPKSWSEAMSSKEARYWKQAADEEYRSLRDMGVIKIMQRSQIPKGRTLMKSKWVFKKKLLADG
SLDKYKARCTVKGFTQRPGIDYKETFAPTPRAETGRIMLVLAHRFGWHRQQGDVPAAFLNPDLDIDLYMELPDGFKKEGY
VVRIKKGLYGLKQAAALWYDDVKAFLADQGLFSFTTDVCLYSNKEKDLFVIIHVDDFQVMGPSIGKVEKLMRALYKKYKL
KTVKTDLFLGIHISNPNKKTLKLSQGQYARKLLTRHGLEECKPANSPLERLMEPNSSQCSTKEKAEYNSMVGGLQYLANN
TRPDIAHSVNHLARFLANPSDEHFLAAKRVLRYISKDPERGITFTTEKRKPILEAYSDADFAGDPKSSRSTSGSLIKLAS
GPVSWRSHLQREVVLSTTEAEYLAATETCRQLQWVKSLLIELGLTQMIEGSGRTNLYVDNQSAISLIKNHDNHKRSKHIA
LRNNYCRQQYQQEAIAVIYVPSDQQLADSLTKPNSSVRIE
>Copia-39_VV#LTR/Copia 114-4135 via tfasty with Copia-2_CP, 88.7% SW:4935, 1 frameshift. [Vitis vinifera]
MAAESSNFVQPAIPKFDGHYDHWSMLMENFLRSKEYWSLVENGIPAAVEGIEPTEAQQKAIADHKLKDLKVKNYLFQAID
RNIMETILNKETGKHIRDSMKQKYQGSTRVKRAQLQALRREFEVLQMKEGESVDEYFARTLTIANKMKIHGESMKQVVII
EKILRSMTSRFDYVVCSVEESNDLDTLTIDELQSSLLVHEQRMNGHGRDEQALKVTYNDQVAGRGGRGRGAFRGRGRGRG
RQAFNKAIVECYKCHQLGHFQYECPKWEKGAHYAELDEKEEMLLMSYVELNQSRKEDVWFLDSGCSNHMCGNKLWFSDLD
EEFRQSVKLGNNSKMTVLGKGNIRMQVAGVTQVITDVFYIPELRNNLLSVGQLQEKGVSILIQHGECRVYHPEKGLIMQT
SMSANRMFILPARVMSKAPTCFQITLEDNTHLWHCRYGHLSFKGLRTLQYKKMVRGLPQLKASSKVCTDCMVGKQHRDAI
PKRSLWRASQRLQLVHADICEPIKPVSNSKKRYLISFIDDYSRKVWIYFLTEKSEAFTTFKNYKNLVEKETGAFICCLRT
DRGGEFTSLEFNAFCKTNGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPKNFWPEAVNWTAHVLNRSPTLAV
KGVTPEEAWSGVKPNVDYFRVFGCIGHVHVPDNKRKKLDDKSFQCVLLGVSEESKAYILYDPVSKKIVVSRDVVFEEDKC
WNWGRSNEEVRLDVLEWGDSNEEGSEDDAEEGVAVEGREREDNLSSSESLGSLSESLGENSGVSGESSPSSQQGRNRRVP
FWMEDYVSGGEFSEGDVEHNLVLFTSTADPTTFEEAVQSSKWRAAMDLEIEAIERNETWELTDLPEGVKKIGVKWVFKTK
LNENGKVDKCKARLVAKGYAQQHGIDYTEVFAPVARWDTIIMVIALAARNGWSVYQLDVKSAFLHGELNEAVFIEQPQGY
EKKGEEHKVYKLKKALYGLKQAPRAWYSRIEAYFIKEGFERCSCDHTLFIKTGDGGKILIVSLYVDDLIFTGNDESMFVK
FKNSMKLEFDMTDLGKMKYFLGMEVLQNSEGIYISQRKYAKEVLERFGMEKSNSVKNPIVPGDRLTKNEGGVKVDATKYK
QLVGSLMYLTATRPDLMYVVCLISRFMASPTEMHLQAAKRVLRYLKGTVDLGVFYQKEGNGELMAYTDSDYAGDVDDRKS
TSGYVFLLSEGAVAWSSKKQPVVTLSTTEAEFVATASCACQGVWMRRVLEKLGHSQGKCTTVLCDNNSTIKLSKNPVMHG
RSKHIDVRFHFLRDLTREGVVELKHCGTQEQVADIMTKPLKLDVFLKLHELLGVSVVPRVN
>Copia-46_Mad#LTR/Copia 262-4782 via tfasty with Copia-3_Mad, 2 frameshifts and 7 stopcodons. [Malus x domestica]
MVTANQLQILQSPITSLISSVSTSVTMKLDDTNYLTWHFQMQLLLEGHGIMGFVDGSTPCPSRFLTLNSGDTELSPRQQS
DQSCACKESDEYMVWRMHDRALMQLITVTLSPPAISCAIGSTSAQDLWTRLREQFSTVTRTSIFKMKSKLQTIKKGTDSI
NVYLQRIKEARDYLSAAGVYFEDDDIVILTFNGLPSEYNTIRSVIRGRESVIFLKDLRSQLLAEEVMIETLHPTPMLNAL
VAHSPNFTQRPSNVQSQAQSGRPYTSHNSNSGYKSFTNKNKGKFNSNNRFNHSKQVFNNGNPGSGILGAAPQFGHPPVIP
CQICGKTNHLADTCRFRNVSQMCQICGKNNHMAATCRFRDASQSHGCQICRNPNHSAEFCFQKGSSPMIIMYVNNASGNS
ISTPLPSAPPPQVWITDTGATNHMTTDLNNLSLTTSYPSHETIHTANGEGLSISHVGSSTLQTPLQSFQLKSVLYVPKLT
QNLLSVHRICLDNNCxLIFDAFCFWIQDKTTWKILYKGQCRNGLYPIISPTDPVSTQKAYVAAYLGHQVTSRLWHHRLGH
PSNTIVSQILRKSNVSHTPDSLPIVCSPCLEGKFSKLPFPVSSSKSAKPFEIIHSDVWGPTPCISIEGFKYYVTFIDECT
RFCWIFPICNKSEVGTTFVSFYHFVVNQFNAFIKMFQSDGGGGNIxEILSIFLVDKGIIHHMSCPHTPEQNRLVERKHKH
IIEMSITLLRTASLPPSFWSYACQASVYLINRMLSSTLENKSPFEVLFNSIPEINHLRVFGCSCYLLLRPYNHTKLQPRT
SKCIFLGYASKYKGYICFEVQKIRVFISHHVLFDETEFPYITLVSQCSKVSTPLPIGLTSTPVFTPNLNNVLITPQSNFV
PTIPSVSHTPSLASVPLSTDVSSTDLHAHSSATLHDSSSSLSTDTPPITGTAHQSSHSLPVVPEFQGDQLQVVLSIPPLN
NHPMQTRSKNGISKKIALLASVHESRGTDLTQVEPTTYKSALKSPVWLAAMQDELSALHTQGTWSLVPLPPHKNLVGYKW
VFKIKKNADGSIGRYKARLVTKGFNQEEAIDYGETFSPVVKPTTVRLVLTLAAHFNWGIRQLDVKNAFLHGVLQEEVYMA
QPPGFLDSTHSDYVCKLHKSLYGLKQALRAWNDIFTSFLPTLGFQSTYSDSSLFVKAVNGTIVILLLYVDDIIITRNASQ
AILDVIHALTQEFDIKDLGPLHYFLGIxVLHKKDGLFLSQDKYVTDLLIKSGMELSKPCATLCLPYNRLLKDDGKPxNNP
ALYRSRVRALQYLTFTRPDNAFVVYQVCQFMQCLMEAHFVAVKRILRYLKATKGCGLHYIKGGLDLQAFSDADWVGDPND
RRSTTGLVVFLGSNPISxSFKKQNTVSRSSTEAEYRALSTTAAKIDxIKQLLQFLQVPVSGPPISLYCDNLSAIALTCNP
VQHQRTKHIEIDVHFVRERVAKQVLLVQFVSSLEQFADIFTxGLSAPLFKTHCDNLRLSLTIPEFEG
>Copia-44_GM#LTR/Copia 53-4642 via tfasty with MTCopia1, 74.0% SW:3546, 2 frameshifts and 4 stopcodons. [Glycine max]
MLDTPPISPKKSSSSPKHDAGSGTVTTDPTLNPSSPYFIHPSEGPSSVSITPILDGTNYHSWSKAFRMALISKNKMAFLL
GTLPVPLVADPLHSAWERCNTLIMSWILKSISPSIAQSVIFLECAVDIWDDLRERFSQGDLLHIAELQDEIYGMSQNNRT
VSEFYTALKTMWEELDNYLPFPVCTYDAKKYHQQDFIIRFLKGLDDRFSVVCSQILLMDPLPTINRVFSMVVQQERQLRV
PSSASPEPNSFVNAAVNSFQGKGRGGYGSTSTIKGAVSSKKCAYCHRAGHTVDVCWGKHGYPPGHPRYPGRPRFNNRDSS
SSANSVAVDEVVEGGCSDFGTSSSNPINLTQAQYQSLMALIQPMQLKSTSDSTGPHSPHQANLLHAIPNGPKRVSESNGD
SYFVFCTTHYTQNIFSTTHKHLIPWIIDSGATDHITSSLDYFTSYSKIKPIKINLPNGDSVTAYFSGTVKFSQNFIIHDV
LFVHEFKFNLLSISKLIFSLKYILIFYDFFCTIQERSMLRMIGLAKLKQGLYQLDVNQEAKAILPTTSFTNKNVVCTISS
SNLWHYRLGHLSGNRLKCYIPFIPNHFNENCDICHFAxKRKLPYCPSSNRASKVFDLVHMDIWGPFSKVSIHGEKYFLTI
VDDYSRYTWVVLLKSKSEVKTHVQNFIALIENQFDSKIKCIRSDNGPEFFLKDLFSSKGIIHHTSCVYTPxQNGRVERKH
QHILNVARALMFQSQLPKQYWSYAIKHSVYLINRVPSSIIKKQTPYELLHKNTPDFSMIKVFGSLCFASTDGLRQKFDPR
SKQGVFLGFQTRTKGYVILDFYTREIFVSRNVLFYESIFPFIKNDLVQINFQKDALPIIPTPTHLSNDNPSLSQPNSDYP
LFHTNPTPHNTADPHLPAAxSSSPSRQTSFSPSPIPEFTNSISSPLSTSHPSPIHSSTPxSSPNNQIPFVPRRSSRPHQP
PVRLADYICGSIQNQPSQSSSTCLYPIQSALSYSHVSESDRHYLMNFSSEIEPRNYQEAISQQCWHDAMRDEIAALKLNN
TWEIVDTPANVKPIGCKWVYKIKRNSDGSVERYKARLVAKGFSQVEGIDFFETFSPIVKMTTVCVILALASIYRWDLQQL
DVSNAFLHGDLSEEVYMSIPPGLQGHGSPQCCKLKKSLYDLKQASRKWYEKFSTLLMSSGYQQAHSDHSLFVKHYNGTIT
ALLIYVDDIVLTGNSLTEMAQIKSILRSNFRIKDLGPLKYFLGLEVNQYDEGICISQRKYCLELLTDSGMLGCKPSSTPL
DSSMRLRQNDSSDFLDDPLSYRRLVGRLIYLTTTRPDIVYATQQLSQFMAHPTKSHLGAARRVLRYLKSCPSKGLFFKRD
SPTHLIGFSDADWATCVDTRRSITGYCFFLGNSLISWKTKKQNTMSRSSLEAEYRALATSTCELQWLSYLLDDLKITRTK
SAVLYCDNQSALYIAANPVFHERTKYLEIDCHLVREKSQAGVMRLLPVPSCYQLADMFTKALPPRSFTSNVSKLELVDLY
TPPACGGLTE
>Copia-46_ST#LTR/Copia 194-4892 via tfasty with Copia-74_ST, 77.8% SW:4519, 2 frameshifts and 2 stopcodons. [Solanum tuberosum]
MGDAPVVPAQLDFGSPLYLHPSENAGSTFLPAVFDGTGCRSWRRAVLKDLSVKSKTGFITGKVVKPASTDPSFMQWERCD
DMVTSWILNSLSPDLRDSLQYVNNAKELWDELEDRYDQTNGCKLYQLQKEINDLVQGTLDVTGYTKMKKLWEEMSTLDVH
SQCSCVCVCSGKAKMHQTEQDRRLVHFFMGLNEMYTVVRGSILMMSTLPSMAQAFAILSQEERQREVRPHNHTILESTSL
NASVSSNIVAGSKGFRTSYTSSKGGASSSNPNTNTVFRGNSSTSNRSNLFCDFCKRTGHTKDRCYKLHGYPSNSRLSKGR
SSGSTANVYSSEEDMNRNEVPDESRKQMPVNLSKGQYEQLLNLLGSLxAGNGTDGSGDMLNGAVNLAGILACYSSITEIG
NLSCKCARLAANSWIIDSGASHHMTYTKNALTNLRTLPYPSLITLPNGYKVKVTEIGDVCLSSTLTLYKVLFIPSFKFNL
ISVHCLALQLKGTISFDSFSCILQGPSLKSPLAFGRARNRLYFFCPKCHSCGLTSGGLSHVICCSTDCFSTYRHVPSSVQ
NKQVLTGTECQTSAPSNVKCSYVSNKEVCIVGFPSRSVNSFPSFAVNSVHTHAQGSEFLWHTRLGHVPFVKMRGISTIPI
HFSNKQPFTCAICPMARQTRMSFPDSTTTTTKVFELLHIDLWGPYHVPTHDGYHYFLTMVDDHSRSTWTQLLRCKSNALQ
TVKAFVTLIETQFQTKLKAIRSDNGLEFTNAEATCFFQEKGIIHQKSCPYTPQQNGVVERKHKYLLETARALLFQSKLPV
RYWGECVLTATYLINRLPTKLLHNKSPYELLYQKRPTYSHLRSFGCLCFPTTLKSHKDKFEPRTTPHIFVGYPYNTKGYK
VLDLATKRIHVSRDVLFHETIFPFVTAPVNSSFNSVINSLVHHSDKLPSVPGTNNTFVHDEVLNSHASLRVTHDHVSTNK
IDTETTLNPCTQPEIALTLSHSATPQEPRRTTRSIHTPNYLKEYNYTLPKLHPSTSNTNTSAPLHSLTSFMSNHDYVCLT
SLCPKSQQLVHTISHDSEPSSYEEAILNPAWQMEMTQEFDALYANDTWELVPLPKGKHAIGCRWVYKIKYKADGSIERFK
ARLVVKEYTQQAGIDYNETFSPVVKMTTVRTLISLAVKKGWDLYQLDVNNAFLHGDLNEDVFMTLPQGLAIDGKGMVCRL
KKSLYGLKQASRQWYDKLASSLCSKGYTHSKSDYSLFYKKKGCSLVFVVVHVDDIILTGTDFEEIASLKAFLHDQFRIKD
LGKLHYFLGLEILYRSDGVLISQRKFTLDLLKEFDLLDCKTTTSPLDPVEKLKATEGTLLLDPTHYRKLVGKLNFLSNTR
MDIAYSVQHLSQFMQSPREPHLKAAYHVLRYLKQDPTLGVFVSTKPDLTVNAFCDSDWATCPDSRKSVSGYLVLMGDSPI
SWKSKKQATVSLSSAEAEYRAVRQVVGELVWLERLLDELTVxCSLPIPVFCDSQAAVHIAKNPVFHERTKHIEVDCHFVK
TKLQQGLITLRHIPTGSQLADVFTKALTGVKHATLLGKLSVFSAPPT
>Copia-48_VV#LTR/Copia 61-4021 via tfasty with Copia-33_Mad, 88.3% SW:4590, 1 frameshift and 2 stopcodons. [Vitis vinifera]
MDGNVGHMVSFNGTNWVTWKTKMEDLLFCKDLNGPIEGDSGKPEGMKDDEWKKLNRKAVGFIRQWIDDSVFHHVSTENSV
HGLWTKLESLYDRKTAVNKAFLFRKLVNSKYKEGTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLTESWETLVV
TVSNSTPDGVVTMSQVTSSLLNKETRRKSSGSSHSEALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKG
HMKRECRKLKFKEQNKEKNSEKKQNDTTVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGN
VRMGNEDVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISAGKLDDEGYNNNFSDGKWKLSKGSLVVAKGKKTCSL
YIVQAKICKCVVSTLENDSSTDLWHRRLGHMSEKGLQVLSKKELLAGIKGTPLKTCVHCFHGKQNRISFRRNIASRKSHV
LDLIHSDVCGPLKVMTLGGALYFVTFIDDHSRKVWAYTLKTKDQVLDVFKHFQAKVERETGRQLKCVRSDNGGEYIGPFD
QYCTNHGIRHEKTVKKTPQQNGVVERMNRTILERVRCLLSHSKLPRSFWGEAMRTAVDLINLSPSVPLNGDVPEKVWTGK
EVSYDHLRVFGCRAFVHIPKDERSKLDPKAKQCIFIGYGHEEFGYRLYDPVDKKVVRSRDVVFLEDQAIEDIDKLESAES
STNDLVDLDPLNPPVVHDIDEEVQTPHDDAAEDDVEPEIEGEQSPQEPLSQTPLRRSTREKQPSKKYSSNEYVMISDQGE
PETYQEVLKHENKTEWLKAMKEEMKSLHENHTYDLVKPPKGKKILKNKWVFRxKNDGNNSQPRFKARLVVKGFDQRKGVD
FDEIFSPVVKMSSIRTVLGIAASMNLEVEQLDVKTAFLHGDLxEEIYMEQLEGFIDKGNDQLVCKLKKSLYGLKQAPRQW
YRKFDSFMTEHGYSRTTSDHCVFVKKYPDGNFIILLLYVDDMLIVGQDMSKISKLKSELSKSFAMKDLGPAKQILGIRIV
RDRSHGLIWLSQENYVKKVLERFNMDKAKPVNCPLAGHFKLSSSQCPTSDEEKNEMQKIPYASAIGSLMYAMVCTRPDIA
HAVGVVSRFMSNPGKEHWAAVKWILRYLQGTSKMSLCFGKGEPILDGFTDSDMAGDVDSRKSTSGYSITFAGGTVTWQSR
LQKCVALSTTEAEFIAITEACKELLWLKKFLQELGLKQERYVLHCDSQSAIHLSKNSSFHSRSKHIDVRYHWIRDVLNDK
LLQLEKVHTDDNTSDMLTKALTKDKHEKCRLLAGMVESST
>Copia-48_Mad#LTR/Copia 214-4875 via tfasty with Copia-2_Mad, 4 frameshifts and 2 stopcodons. [Malus x domestica]
MVTADQLKIVQSPITSFISTISTSVTVKLDDSNYLTWSFQITLLFESHGIMGFVDGSRKCPLRFDDDSTSEGIETDGYLV
WKMHDRALMQLIIVTLSPMAMSCIIGSRSSHEMWVNLAERFSTVTKATIFQMKTELQNIKKGSESVSVYLQKIKYAKDHL
AAAGVHFDDDDILALKGLPAEFNTFRCVIRGRENTISLKDFMSQLLAEETTIGQAFETSTYCGSAMVAGTAINKGKALVL
DQASSYSVEFGSSSxTNDQNYKSNGSGLSSSGHSFGGPYNNTGSPIFNNGGHYQGGYKGNNFRGRGRDRSYYSGPRFYxP
PSNTSPGILGAPRPFQSHCPDHPSEIPTCQICNKKGHVAADCFQRHSSQVTSPQSPVQCQICWKFGHSAVQCYHRGNFAY
QGKSPSSTLAAMHVNHQPSAPMDQFWVADTGATSHMTSELANLDLSNPYHGSDTITIASGAGLQISHIGTSKLHTPTHSL
ALKNVLYVPKISQHLLSVSQLCKDNRCRFICDDLSFWVQDKLIRTILLKGLCRAGYYHIPFRTFQKSLSASSLSHKCFLA
QPVSTSLWHQRLGHPSNAIISTMLHQNKVSLSFDTCKSVCTSCLEGKFTKIPFVFPTTKSVHPLEIIHSDVWGPAPLLSY
ESFRYYVTFIDECTRFTWIFPLKYKSEVFALFVKFHAFFNTQFSVKIKVLQSDGGGEYTSSQFQSFLATNGIIHQKSCPY
TPEQNGLAERKHRHIVETAITLLQTARLPNLFWFHTCATATYLINRMSCATLKMQSPYQMLYGQIPSITHLKIFGCACFP
LLKPYNTSKLQPKTTTCVFLGYATNYKGFICLDVAKNQLYISRHVLFDESVFPYKQFSSSPKSSQPAIPSTSLNSCPSLP
CITLTNQVTSSSHPHASPSHITCSISTTASRASESLTASSASDSLPASRAPDSLETHASATSFFNPSFSSPSSNHIFQSD
IPAPTPTQHPVPVDPDFQQEHLHVVLPIPMNVHPMVTRSKNGIIKRRALSASVSSQAILSEPKSFKAASKVPQWQNAMQE
EVDALHSQNTWSLVPLPRGKNLVGCKWVYRIKQNADGTVARYKARLVAKGYSQEEGINYGETFSPVIKPTTICLVFALAA
QFKWQLPQLDVKNAFLHGFLQEEVYMEQPPGFQSLNHPSTYVCKLQKSLYGLKQAPRAWNDRFTSFLPALGFKSSHADSS
LFVLHSHHDIVILLLYVNDVILTGSSSQLISQVIKELTTEFEMKDLGNLHYFLGLQISHTDEGLFVSQSKYVTELIDKVD
LQDCKPCATPCLPYHRLLKDDGKPYHSPEQYRSVVGALQYLTFTRPDIAFSVNQACQFMHNPMESHVIAVKRILRYLKGT
SNYGIHFKPGQIYLQSYSDADWVGDPNDRRSTSGFVIFLGPNPISWASKKQHTVSRSSTEAEYQALAITAAELAWIRQLF
CDLHISLPQAPMLYCDNLSAISLSTNPVFHAKSKHIEIDYHFVRERVTMGDLQVQHVSSADQFADILTKGLSAPMFQQHC
GNLWLSSITHEIEGGCKSVNKHKDENSSEESSRA
>Copia-43_ZM#LTR/Copia 37-4383 via tfasty with Copia1_ZM, 1 stopcodon. [Zea mays]
MSSSPSNPLIAHPVSEKLTRANHAIWEAHVRAAMRGSRLIGHLTGTTPVPEKEIADADGKKTSNPAFEEWDARDQQVLSY
LLSSISKEILVHVSRSETAADAWRKIQAMFASQTRARAVNLRIALSTTKKGSMNVAEYFAKMKGYADDMAAAGRPLEDDE
LVEYIITGLDRDFTSLVSALVARVEPISVEELYSQMLSYETRMDLIHEGEQQASANLAGRGGRSRGPGRGRGRARPPSRG
YSGAGVGGQDSRGAGGQGHGPGGQDSHTVAGKQRGYRRSSGDPCQVCFKKGHTAVNCWHRFDESYVPEERHDAAATSSYT
VDTNWYADSGATDHITGELEKLSIRDKYNGGDQIHTASGTGMEISHIGNSSVSTSSRKLHLKDILYVPEAKKNLVSVHRL
TTDNSAFIEFHPDFFLIKDQATRHTLLRGPCHRGLYPLPSSSSIKRHACGVSQPSISRWHDRLGHPSSVIVRRIINRNKL
HCLVESNNESVCNACQQAKAHQLPYPISSSKSNSPLELIFSDVWGPAIESVGRKQYYVSFIDDYSKFTWIYLIKLKSEVF
QKFIDFQRLVERQFDRKIRAIQTDWGGEYQKLNSFFTKIGISHLVSCPHAHQQNGAAERKHRHIVEVGLSLLSHASMPLK
FWDEAFLSATYLINRLPSQVINNQTPIERLFHQKPDYSSLRVFGCACWPNLRPYNTRKLQFRSKQCAFLGYSPLHKGFKC
LDISTGRVYISRDVIFDETVFPFSALHPNAGARLQSEVLLMPSLTTKIGANRRDTDVPDFLPVNTNLSDENTAVHRHQYA
GGPVHRIDGSLPTVASLTPGEEPDQSTAHASEGIRDTVQAHAAPVPDHCTTHAAPVPLHCTAPTAPIPPITTGADVTIQD
ALSLQQTGEAAAFLPEPVHAHDDTADTSLRPHTRLRSGIRKEKIYTDGTIRYGYFTSSGEPQCLDEALSNSHWKNAMDLE
YAALMNNETWHLVPPKKGTNVIGCKWVYKIKRKADGSLDRYKARLVAKGFKQQYGIDYEDTFSPVIKATTIRIILSMAIS
RGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFEDPEKKQYVCKLDKALYGLKQAPRAWYSRLSSKLVNLGFSPSKADSSLF
FYNKGNTTVFVLVYVDDIIVASSTxAATAALLRDLKGEFALKDLGDLHYFLGIEVNKVHDGIILTQERYASDLLKKVGMS
NCKPASSPLSTSEKLSLHEGSLLGSNDATQYRSIVGALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWAAVKRILRYIKQC
TKLGLHIHKSPSTLVSAFSDADWAGSIDDRRSTGGFAVFLGSNLISWSARKQPTVSRSSTESEYKAIANATAEIMWVQIL
LKELNISSPRTAKLWCDNMGAKYLSANPIFHARTKHIEVDYHFVRERVLQKLLEIDFVSSQGQIADGFTKALSVKLLENF
KVNLNLRRL
>Copia-41_SB#LTR/Copia 50-4327 via tfasty with Copia-51_SB, 1 stopcodon. [Sorghum bicolor]
MGDRSGGVGGGDRGDRIHYPVLTTTNYTSWSIRVQAIMEDQGVWEIMEPSGETSSQDATAVAAAKAKDRKAKACLLQCLP
DDLLMQVAAKKTGKEVWDSLKARFVGEERVKEARLQNLKSEFDALRMKEDDSIDQYAGRLTGMSVRYSNLGGSLGDAALV
KKLFDTVPGRFINVVAGIEQFYDLKKLAFEEAVGRLKTYEERTRRGAGAVAKTDTGQVLLTQAEWEARQKRSAGEGSGKR
SSESSSRGRGRGRGGNGGGRGGQGDAAKDGTSKRDKSHIKCFKCHKYGHYANRCPGEEKKKEEAHHTSAVEFEPTVLLAE
TVFPGRLEHPSSEELLSENxQEKLMFHEVKVYPEVYYAGDDTSSGDVWYLDNGASNHMSGDRQKFREIDSTVSGKVTFGD
GSTVDIQGRGSILFQGISGDQWLLYDVYFIPKLRSNLVSLGQLTEIGHRVVMDDDLIEVSEKNPERVVMRVQRSANRLYK
IELKPVDPVCLLANVNDVSWLWHGRLGHVNFQSLKLLAEKEMVGGVPLIDHPDQVCQSCLAAKQTRCNFPHVSRWRADEP
LELLHIDLCGPITPETAGGSKYFMLIVDDCTRWMTVSVLKSKDQASDAFAKFKAEAENSLGYKIKCVRSDRGGEFLAAAF
REIYEKAGIRRQLTAPYSPQQNGIVERRNRTVMEMARSVMKSMKIPGIFWGEAVRHSVHLLNRLPTKPMGNRTPFEAWNG
RKPQLGHLRVFGCKAHVRPAKPNLKKLDDRSVPMVYFGVEEGSKAHRLYDPQSKKIVVSRDVVFEENVSWDWTAEVGENS
EFVVIETEEEAIPQYMGTGHGGINHADPIQENSGGVPEGVLDSGGASGSFQGADDGGNQFQQGGEVLSDTVHSQTTEGED
SMNVEVNPVQVVDDDNMDVDHDDGPVRFRSIYEVYEEAEEVELVSDAEIEINALMAIMEEPTCYQEAAGSNDWRGAMDSE
IQSINKNKTWSLVKLPTGQRPIGLKWVFKLKKNAEGQVVKHKARLVAKGYVQKHGIDYDEVFAPVARLDTVRLLLAMAAN
WGWEVHHLDVKTAFLNGELVEDVYVAQPDGYAVKGKEKMVYKLSKALYGLKQAPRAWNVKLDSSLKKLGFKKCASEAAVY
TRGVGKTRVILGVYVDDLIVTGGDPAEIAVFKRQMTSEFEMSDLGLLSYYLGIEVKQEEDCITIKQTGYAKKVLSRFGMQ
DCNPTKVPINPGTVLHDDKEGVQVDATEYRRIIGCLRYLLHTRPDLAFSVGMASRFMEKPTVMHQNVVKQILRYLHGTLN
YGLVYTKEEKEEVLLGYSDSDLAGDRKLRRSTGGMDFYLNGGLITWCSHKEKTVALSSCKPQCVTIHVDNKSAIQLMKNP
VFHGRSKHIDIKFHYIRECVERGQIAVKWIGTLEQKADSLTKAMAVTKLGEMRHMLGVRELEGNQA
>Copia-41_BD#LTR/Copia 40-4266 via tfasty with Copia-46_ZM, 5 frameshifts. [Brachypodium distachyon]
MAYSSSSPILNQQVSEKLTHENYVLWKAQATAPIRGAQLFGYLDGSLVAPPEKLEIKKGDLTEKVPNSAYALWIAQDQQL
LGFLLNSISKEVLPQVASFTSSREVWKALEEMFSSQSKARVVNIRMTMANFKKGTMSAADYFSKMKAYADELASAGKTLD
DDDLISYLLAGLDMDYNPLVTSVTIALSRSDKVSISDLYSQVVNFDSRMEMLQAGNGNNFQSSANVVVRGGRSNYNQRGR
GGRDGRGNGNGGRGRGQPGSNQRQGGGRGNNRDRPQCQLCEKYGHTVLECWHRYDENFVPYSNSAGSATTNYGTDSNWYM
DSGATDHITGELDKLTVRDKYNGSEKVHTASGAGMTVSHVGSTVFSTPHKNLHLTNVLHVPQASKSLISTNRFVSDNNTF
VELHPNYFLVKDQATRRVIHNPRSKGGLYPFEPLQSSSTPTKLAFAVSKPSSTRWHHRLGHRSLEIVRRVIRNNELSCSN
ESSIESVCDSCQRAKSHQLPYPISTSVSTSPLEIVFSDVWGLARTSFGNFTYYVSFIDDYSKFTWIYLLKRKSDVFFVFA
NFQAILERRFNCKIISMQTDWGGEYHKLNEFFQKIGIAHYVSCPHTHQQNGSAERKHRHIVEMGLALLAQAFMPLKYWDE
AFLAATYLINRLPSKVINFDTPLNKLFHQAPDYSSLRIFGCACWPHLRPYNSRKLEFRSKQCTFLGYSSRHKGFKCLDIS
TGRVYISRDVIFYEVVFPFSALRENAGARLREEILLLPPSLGILGINSAQPHANDHTNHPDDAHVFSEEFGAENNSLGSP
MANTGSGDPSAPSSVNESSPRHGPSPAAQEVSGAPEGPSDADEPTESSSAVASSPGSTVQPAPVAPSAPTRPRTRLQHGV
IQLKKLFPGIVRYGMVCTKDEPGDLVTTLADPNWKRAMDEEYDALKKNQTWHLVYPLEGKNIIDYKWVYRVKRKSDGSVD
RYKARLVAKGFKQRYGIDYEDTFSPVIKDAIIRIGLSVAVLAVHKGWCLRQWDVKNAFLHGVLEEEVYLKQPPRYVSNAL
PGHVCKLEKALYGLKQAPRAWYSRLSTQFQRLGFIPSKLDTSLFIFHKGGVAIFVLIYVDDIIVTSSFEQAISALFQDLR
SEFALKVLGALHYFLGIEVRGNHGDLLLTHEDLLARTGMKVCKPCPTPLSSTEKFLAYAGDPLGDDDATRYRSVVGALQY
LTLTRPDIAFSVNKVCQYLHSPTTDHWSAVKRILRYISGTMSLGLTFKKSQSLLLSGFSDADWAGCADDRKPIGRFAIFL
DGNLITWSARKQATVSRSSTEAEYKALANVTAEIIWVQSILKELGIPQVKIPCLWCDNLRATYLSANPIFHAKTKHIEID
FQFVREQVAQKKLEIRFIPSGDQLADGFTKALPVALLNKFVHNLNLSSIR
>Copia-42_BRa#LTR/Copia 106-4048 via tfasty with Copia-62_BRa, 82.2% SW:4447, 1 frameshift. [Brassica rapa]
MAVNPPVKERAFGVTNIKSHIPIILDFDDHNYDAWRELFHTHCLAFDVVGHIDGTSVPADDNDTPWMKRDGLVKLWLYGT
LTQPLFRSTFKTGGTARDIWVRIKNQFRNNKEARALQLDHDLRTTEIGDRSVHEYCQTLKSLSDLLANLDVPVPDRTLVM
YLLNGLNEKFDNITNVIKHKDPFPAFDIAKSMLLNEETRLKRGQKAPATTDTASSSTVLTASTEKPQQQKFNRGNRKQNR
GRGRGGFNQRPWNNNWNPNWNNNNAQWPLPFYPGSMPQWPTYPTPWAQQDTRGILGSQPQRPPQAHFANAPLQPTTDFAQ
AFNTMTIADPGAANWYMDSGATAHLASSSGMLNSVLKDCTGKTVIVGNGSQIPITSFGSTSIPANSRPLSLKNVLVAPNI
IKNLISVRRFTNDNWCSVEFDPFGFTIKDLSTRRILLRSESDGDLYSLPSHFNKPATALMTAAPSSLWHKRLGHVNKASL
HSLISSNSISCNKHVSHEICEACQLGKHLKLPFYESKTTVSSPFELIHSDVWTSPISSLSGTRYYVLFLDHYSHFLWVFP
LRRKSEVFSKFIHFTNYVQTQFKCQIKSLQCDNGGEYNNTQFHNFFSSKGIVVRFSCPHTSQQNGKSERMIRTINNTIRT
LLFQARLSPTYWVEALHTSVHLLNILPSTSIHNKVPYTILFHKKPTYDHLKTFGCLCFPNINYDHLHKLAARSSPCLFLG
YPANHKGYRCLDLKTRKIIISRHVVFDETIFPTAQPLANKKEEYHFLDSLSETSPLFKSILESPFLQPPPLITSAPTQQN
IPSVTIPPAPSQPRHHMTTRSRDGTRKQKQVTSLLSTSISPIPTSHLKALLDPNWNPSMTDEYDALIKNETFKLVPRPND
TNIVRSMWLYKHKVDADGNPTRHKSRLVANGKSQEAGLDYDETFSPVVKPVTIRSVLHLALQLDWAVHQLDVKNAFLHGR
LDKPVYMHQPPGMIDKSQPHHVCKLEKALYGLKQAPRAWNARFSEFVTKLGFHKSTSAHSLFVYRPLSYFLGIKIEKNSK
GMLLTQSAYAKDILARMSMQNCNPVTTPVDLKSKLSQDDGDPIHNPTEYRSIAGALQYLTLTRPDIQYAVHQLCLYMHDP
RLPHLNALKRVLRYLKGTLDQGLQLFKSTSTQLTAYTDADWAGCPDTRRSTSGYCIFLGDNLLSWSSKRQPTVSRSSAEA
EYKGVANVVAETCYIRNLLLELGCPLTTATLVYCDNISAVYLSNNPVKHQRTKHIEIDIHFVREKVAMGQVRVLHVPSSS
QFADIFTKGLPSSLFNDFKHSLSIRSPNDSTEGG
>Copia-43_GM#LTR/Copia 112-4141 via tfasty with Copia-93_GM, 83.2% SW:4132, 1 frameshift. [Glycine max]
MNNNGGFSSNILVLDGKNWDRWSALMKSLFGAQEVSDLVQNGYEDLGANPTEAQRLVFKEAKKKDCKALFYIQQNVDSYH
FEKIAKATRSKEAWDILEKYHDGGEKVKQVKLQSFRRKYEMMQMEEGQKIGDYFSKLTSLVNQMQTCGEVITDQMVVEKV
LRSLTSKFDFIVVAIQEAKDVKAMKIEELQNSLEAHELMVIDRGTERSVQQALQAQISKKEGNSKNSKKKGKGKGNWSNN
GKAKTDDKAESSKRGGSDRGHNKKKEFDKSKVQCYNCEKYGHFADECWFKKDRQNNEEANVAQGKDPHTVLMMATTCEDK
VQNEEWYLDSGCSNHMTAHREWLTSFDNSKKTSIKLADNRKLAAEGIGNIVIRGNDGKRVIIEKVLYVPEMNCNLMSIGQ
LVEKGFSVTMDGDSLKLFDAEKNLVLKSNLSKNRTYKCSISSDKMMCMSGVTSEETEALWHMRYGHLNFRSLSELNSKDL
VYGLPKLNARREICEICVKSKQSRLPFVTEAPKRASAALQVVHSDTCGPFEVPSLGGSKYFITFIDEFTRMLWLYTLKLK
SEALDVFKRFKVLIEKESDKSIKILRTDGGGEYTSKDFEAFCTSHGIVHEVTTPYTPQHNGLAERRNRTLLGMARSMIKQ
KKLPHQFWGEAITTAAYILNKCPTKKLEKVPEEAWCGRKPSVQHLRVFGSLCYKHVPDVRRSKLEDKSEIMILIGYHPTG
AYKLYDPTTQRVHISRDVIVSESESWKWQVTPVYSSEIQQGFIYPDSSDESEDEGDNEVDGNVPQEDEASVRPQRIRQAP
RRLDDCERALDNAVSDEGDLIHFALLADAEPVEYRDALKNKVWKKAMMEELSSIEKNQTWELVKLPENKKTIDLKWVFKT
KLNPDGSVSKHKARLVARGFLQKQGIDYNEVFAPVARHETVRLVVALANLRNWPLYHLDVKSAFLNGPLEETVFVTQPPG
FEIAGKEGMVYRLHKALYGLKQAPRAWNKRIDEFLIQLGFKKCTVEYGVYVMNSKDSGMLIICLYVDDLLITGSDPEEIK
EFKLTLNQEFEMTDLGELSYFLGLEFVKTKKGMIMHQQKYVLEILDRFGLIECKSISNPCETSSKLEECSEEEKADATMY
KQLVGSLRYLCNSRPDICYAVGVISRFMNEPRKSHLIAAKRILRYVKGTANYGLVFPANRGEDQLDLIGYSDSDWCGDRV
DRRSTSGYVFMLNGVAICWSSKKQPVTTLSSCEAEYIAGTYAACQLVWLESLCLELKCKLQKPQKLLIDNRSAINLAKNP
VSHGRSKHTRFHFIREQVMSGRIELVYCPTQDQLADGFTKALKLDRFEELRRKLGLTGVEIMD
>Copia-42_SB_gag#LTR/Copia 54-2550 via tfasty with Copia-10_SB_gag, 1 frameshift and 1 stopcodon. [Sorghum bicolor]
MSETEKTQELAKEIAKELLAAQSKLFQDEMKKMQDEMTKLKEELSKKVEDAIGSRKSDEGPSGHKDNDNESEVGGKEEGH
PKGVYSNMNFDYSQLIKASHHAPSINLGKPPHFDGTRYPDWAYKMKMHLIAANLWEVVDVGVTFPTEDREITPEEAHIFR
QNAQAVAILVSSLAPDEFNKVNGREVAKDIWEVLKTAFEGDKSVRKGNIELLHGELERFVFLKGESTQAMFDRMMSLVNR
IRSIGSTEWDENKVARKILRTYRAKNNMLASVIMERPDYDCMTPQEVLAKLKHHECLDQDAINAHSQNPSAMGYNKNVAL
KVEQGHEHHKSCxEKKKVKQDSSSGDEDSDQEVAFIIRNLRKFMKKKGHKRRRGGQTGHFIAECPNMKDKNKYNKNNDKK
YKGKKKGEAHLGEEWISNDSDSSDEEKKKKKGAANIAIHKSSSSLMNLPKASPPKLFPNLDSTPSLFANLNDDDYYTPTC
LMAKGEKVTTSSETSSDEYDSHDENIEQHEASLIKKFGHKAFTKIKSLMKKLEKRDRCLEMQGDIIVQEKEKNLALKASI
AKEKTKVEKLTVELSLANDPIGKLTKEHSSVDNQVASLKNENSIAQESLTSFKEKYRILELNYNTLWASTSTSPKATKDS
NVSTSNGCKRCYKVDVNAYATNLVELERKDKEINRLKMEIKKGCKCQEQSKRTIYKAFRHPSIKEGLGFNRYDGKINGRN
IVNGVPCVKFNKGVALDELIYKANNKVYLPLIQPTSNKESKIKSSEAPKSQAPLPRCYASDYMCCWSKDGKIVVKYVGAH
KRKEILRSVWVPKLYVTNPLGPKSIWVPKTQV
>ERV18_MD_gag#LTR/ERV1 1709-3639 via tfasty with MdoERV3_gag [Didelphinae]
MGNTATHQRKSGNIPPDSALHKFLNSWSDPNLPKENWMTKKEARKLCKAWMDISFTWPKYGSFDFKILKDLKLAIKNKDS
KDYKYWYLWAYHVDKSTIPSSEETFLSLEPNHSSLTPSVKSSKKHALSSHLACEEVSPHTDPNQDLNPSAPLPVRPHSSP
TPPIPFPPNLPLYPPLPTHLPYPHPYHPYFNPFPYPPSYPPYYDPSRPHPSYSSPPHPQPLPHSSPPHPQPHPRSFHSAS
PPADQLHSTTPPPSPTSLTTTHSIELQNTGQAAVATDDSNKGLFPLRVVPTYNRHGDLVNIRHHTPFSPQDIERFKEKTP
SYEAEPVVVINKFESIFRTYNPTWLDVEDLLQALLTERERNKILSLVNQAQGEGTAHWPTEDPKWDPNSEQDYLQLCQAR
NALIKAMRACSDRPGTWTKFENLKQEDSENPTQFMDRLIELGGRYIELDLDRERDLRQIRIQFVKNSCKVVRNYFMTSCP
NWPTMDLEELKRVAVYAFEGRxGKGEENTDLVEALRKEIKELTSKQGEKDKENATLVETLRKEIKELTETVVKVKQGEII
APLQESTKQPLTCYFCGKVGHVIMNCKKRNQENRNRSFRNSNIDRRNSYSNEENQNSHPNTCTQCGNSPQHGRPQRCGQR
DCDE
>Gypsy6_gag#LTR/Gypsy 903-2006 [Drosophila fruit fly genus]
MCSPFTQYREHKPSDSDSDSEGPPRIFIPIRAPTNPPSGRTMDSDQLKAVIQTAVNRALAEAAGEARRREEEMRQVIQQL
ATQVAAVQIAPTQAAVPIIKVYQPIDITGNVECSEPLDAVKCLPEFTGAQETYVSWRQAAVAAYYIFRNYVNSSRHYQAV
VIIRSKIRGPADAVLSSFGTVLNFDAIIDRLDFTYSDKRAIHVIEQEMGTLRQGSLTLLQYYDEVEKKLTLLTNKATMSY
ETAAAKILCDKFRDDALRIFISGLKRSLSDVLFSAKPKDMSTALALAQEVESNHERYTVATSFAKSLEDRDRKQYPMAQE
RQQTPYQAHSQVSRGKNPHFIKQVKAQVHSAPHNDRRRENTSEPIGG
>Gypsy6-PTR#LTR/Gypsy 35-4381 (1 stopcodon) [Populus trichocarpa]
MAPKRRANLPNLREQPLDEVYERDEIARLQQQVETLTQQLAASMAQHQDPNPQDVEKESEDDENPFAHQPVQRRPAHDES
RRWETGLKVDIPEFHGGLQADEYLDWINTVDEVLEFKQFLEDRRVALVATRLRGRAGAWWQQVKKTRTLQGKGKITCWDK
MKKNMRSAFLPYNYTRTLYQRLQNLRQGNRSVDDYTTEFYQLVSRDAIAEDEESRVARYIGGLRIQFQDVLNMFDVLSVS
DAYQRAVQLEKQLVRRNTGGLNFGGFGANTSNNSGRTGSMNFGGTGAGSASSSSTRTAVPPSPITKPTMPTHVTTPNTGF
RCFNCGEPGHRFAECKKGQRRGLFSDVEEINREQEGDVEAEPVYDEEERLEGDAGPMLMIRRSCLAPHVVEDDWLRTNVF
QSTCTISGKICRFIVDSGSCENIVSEEVVRKLHMATESHPRPxKLTWLDKKNDVTVSRRSLVSFSIDTTYKDQIWCDVVS
MDACHLLLGRPWLYDRHVMYDGFLNTCTFIFNSIKVVLLPKKEVTGGIPTGENNNLLTMAKFEAEVKESGVVYVLIGKME
AENGIIPSNVEPLLQEFGDIFPAELSETLPPLRDIQHQINLVPGANLPNRPHYRMSPKEHEELRRQVEELLTKGHIRESL
SPCAVPALLTPKKDGTWRMCVDSRAINKITVRYRFPIPRLDDLLDQLSGATIFTKLDLKSGYHQIRIRPGDEWKTAFKTR
EGLFEWLVMPFGLSNAPSTFMRVMNQALRPYIGKSVVVYFDDILIYSVDPRMHLQHLREVLTVLRKEQFFAAKGKCVFLS
DQVLFLGYIVSSKGLSVDETKIEAIKQWPQPQTMTDVRSFHGLTSFYRRFIPHFSGIMAPVTDCMRNNNKFVWTIEAETA
FQEIKRRLTTTSVLVLPDFSNPFKLHCDASKLGIGAVLSQNGRPIAFFSEKLSGAKLRYNTYDVEFYAVVQAVRHWRHYL
FLQDFVLFTDHDALKHMGSQDKISSRHACWAAYLQQFTFVIKHKAGTLNRVADALSRRKNMLVDMRVKVMGFDSFQNLYA
SDPFFAVVIENIQNNQQSDFVLHDGFVFKGTQLCIPECSLRTKIIQELHREGHVGRDRTYLLVAASYFWPSMRKEIGRFV
ERCRVCHVAKGGATNAGLYMPLSVPVRPWTDISMDFVLGLPRTQRGFDSIFVVVDRFSKMVHFIPCKKTTNAVNVAELFF
REVYRLHGLLESIVSDRDTRFLSHFWRSLWKMVNTHLNFSSAYHPQSDGQTEVVNRSLGNLLRSLVGDQLKSWDKKLGQA
EFAHNHAVNRSTKLSPFKIVYGFLPRCPLDLANLPNNTKVNHKAEDFVTQLQDIHNLTRQNLLESIAKFKHDADRKRRLV
NYEVGDFVWAVLTKDRFPIGEYNKLSARKIGPVDIIEKINSNAYRLKLPSHLRTADVFNVKHLLPFHGDLSSEEEDLLNS
WSNSSQLGE
>Gypsy7_Dpse_pol#LTR/Gypsy 3792-7039  [Drosophila pseudoobscura]
MSKKHQGEDGRVSSADQCSAEGVGETGLDVASGETQGEPSRDFGEAEPPIVGWHINLIEGKKLAPPVEIVKSRRLTRNAR
RIKAHFKSLKCINEIRKKEGDKRPYAEVKLLDRTVVGLLDTGAGMSCVGGQLAKEVVCSKKPFKLVSSNAFTADGKKHQI
VGKLTTKIEYRGESKIIELFIIPNLSQDLYLGIDFWSLFELLPSEWKISEICESSDVHTLTSAQEAALNQVISLFPSFAV
SGLGRTDMLCHTIDVGNAKPVKQRHFSVSPAVEKSLYGEVDRMLRLGVIEESGSAWSSPVVLVQKPGKARLCLDSRKVNA
VTKKDAYPLPQIDGILSRLPKAEYVTSLDLKDAFWQIPLEVASRDKTAFTIPGRPLYQYKVMPFGLCNASQTMSRLMDKV
IPAALRNQVFVYLDDLLVISDTFPSHLEVLRSVAEHIRHAGLTINIEKSRFCRRSVKYLGHVIGEGGIKTDPEKISAITK
FPLPRTLRALRSFLGMAGWYRKFIHDFASLSAPLTDLLNQKKKFVMSQDGIEAFEKLKETLCKAPVLRSPDFGKPFYIHC
DASNTGVGGVLVQKTEEGDEMPIAFVSKKLNKAQRNYTVTELECLAALVCIKKFRAYVEGHQFTVITDHASLKWLMSQNV
LHSRLARWALKLQGFRFSIEHRKGTQNIVPDALSRVHQDEIAAIDKSNGLLVDLDSPHFRAVGYLELVERVKSNQERLPD
VKVVDNLVYRRAEHANGDLLHDSFAWKLWVPKELISEILKQSHDDPLASHGGIHKTLERVRRYYFWPGLVNDVKAYVNNC
SECKTTKAPNFTLRPPMGKPAESQRFFQRLYIDFLGPYPRSRSGHVAIFIVLDHYSKFVFLKAVKKLTADVIIKYLREDL
FHTFGVPETIVSDNGSQFRAEKFQSLLKSHRISHTLTAVHAPQANASERVNRSVIAAIRAYVRPDQKDWDENLSSICCAL
RSSIHSGVGATPYYMVFGQQMITSGGTYSLLRSLEMLEDRAAAFTREDSLELVRKKAREVMDKQNARNEKQYNLRSREIV
YQVGQEVYRRNFKQSNFQAGYNAKLGHAFVKARVRRKLGNSL
>Gypsy12_AG_gag#LTR/Gypsy 810-2051 [Anopheles genus]
MKQKIELLVERLKQLHDNLKHIDRCYRQCAISTYEESAKETFKKLQEKLVKYENEISEEELTYTSKIARTLYSDITKFIA
IHKQKFTVSINNVSLGTQTMATFNLKEASAVVPTYNGSADQLQSFLRAIHFAKRMFPDDQEGLLVDFIYTRLSGKAETGI
KPNLTTVQQVAEDIKSRCEEKVEPSKVIANMKSLKTKDTKTLCKEIEELTEKLKVLYLQKQIPTEVANEFAIREGINSLI
DKVSNREAKTALIIGKFTTINEATKVVDECESRQDKAQVLAYQGSYNNSRFNNYRQQNRNYQYNNRPNSNQSYRRNDNYR
NNNNFNNRNYNSDGYNSNQRNNNRSGNNRDNQNQRYNNNGYQNRPNRSPRAITNRETGQQSRNVYHTTAQVQEDENNFLD
QKESTQTLDQYTR
>Gypsy11_Dpse_gag#LTR/Gypsy 1432-2781  [Drosophila pseudoobscura]
MGVKWISVRRKNELEMITAELGLDSAGTVEELRRRLATFANSADLPSTARSRLEELEAQYGVAVTPEVKPLSPRPSTLAP
LSLQPHPPAAYDVVPASSRGIVASGSAVPAESLLHGIDVGAAQRNLHGSKDPPTKGSTWNEEHFNAAITEKMVRWGIVFD
GSGDPLSFLEHVQERAATYKIDLRHLSQGILVLLTGRAESWFRTSRLSGEPWETFRKEFSEFFLPPRYFQRLEDEIRTHF
QRPKEAFKTYLVDIRLMMQRAGYTEAQELERIYDNMLPEYQLFTRRKDFDSLSELTQLVVNFEVTRNKGPSELTGYANQA
RDTHPRETLGPTAGQRGPRNHAAARTQDLRHDRTQVRDWSTDSQQPDVRNGTIFQDADTIIDVQHACRNCGGSGHFSREC
KQPQVLYCWDCGRRGLRTIECCRRNSSGNGQALHSAGDRAKTDNPTPRQ
>Gypsy5_pol#LTR/Gypsy 1393-4914 [Drosophila fruit fly genus]
KFSIKSLVGQTGYLEKFKVGGSLLYILINFGPTSPLKFLVDTGATSSFINPELIEEHNQQTLNTPILITTALGSHKVNKI
AKIKLFTKHNCNDTFPLLLFKFHNYFDGLIGMNTLNKILGVIDIPSKILSTPKFNFELLQQVKQKAELFNIEEASKILVM
LPVTIKEGTFLFEDQKVSGNLFITGGLYTAHNYYSCMEVVNYSKKQEKLYLETPIEVNHFNTDEFYIVNDIKDYGTINSE
KEKEKFSTLRLELLNSEETTAFKKLCKQFPNIFYKEGDKLTFTNRVKHSIKTTDEIPVHKRPFRYSPAEKTEITDQINKL
LEQDIIRHSHSPWSAPVFLVPKKLDASNKKKWRLVVDFRQLNDKTIKDRYPMPNINEILDKLGRAQYFSALDLASGYHQI
EVEPKDRSKTAFSAVGGHFEFIRMPFGLSNAPATFQRVMDNVLAEFNGKFCLIYLDDIIVFSTSLQEHINHLSSIFKKLT
LANLKLQPDKSEFLKKELEYLGHIVTEKGVKPNPKKIETIKAFPMPKTRKEIKSFLGLLGYYRRFIRDFAKITKPLTQQL
KGKSDVTIDDNYIKTFEFCKTLLCNDPILQYPDFTKSFILTTDASNVAIGAVLSQGTVGNDRPIAYASRTLSESETHYAT
IKKELLAIVWAVKYFRPYLFGNKFLLVTDHKPLVWLKNLKEPNSMLVRWKLQLLEYDCEVIYKKGSQNVVADALSRIVVE
LNTNEARPITSDTEILTSNRPINEFAIQIILKIADCANDLLETPFKNKLRRIISRPLFDDQTMIDVLKTALRSNKTHAIY
TTDTIFESVQKIYAAFFAPSKSYKIIRCTTYLDELRTPEEQVEYISDYHIKNNHRGIDETVSHIKRQIYFPCLKERVSQL
INKCDICQTLKYDRQPQKPIFQLTETPNKPLDIVHIDLYSINNKTILTIIDKFSKFAEGYTIPSRDSINITKHMMFFFKT
HGIPKTIVCDQGPEFAGIIFKELCNQYNITLHVTSFQQSSSNAPVERLHSSLTEIYRIIFEKKKALKLNLDHDCILTETF
ITYNNAIHSSTKLTPYEVFTGRTHIFEQNYKAVSQQDYMRELESYKNNLYVEVKEEFESQKLNKILKLNEDRVLPIAVQE
GDTVFRKENRRNKLTPRFTQHKVADDNGVTFTTNKRQKIHKSKIKKRIRQNSR
>Gypsy4-PTR#LTR/Gypsy 41-4689 via tfasty with SZ-10, 1 frameshift and 1 stopcodon. [Populus trichocarpa]
MPKTRSGHSYNIMDQGSNIPSSSNPNPNTDTFQASSSFQQQLDQFSQTLNVMMHRLDVIDERSNREVGRPPREARRVQRR
REGVGDDEDEIEEVQMGGVRHRAIHGQPRDTDVQRNVWDELARRMKVEVADFYGKLNPEAFFDWITSLEDYFDWFSVPGE
RKVQFVKLKLKGPARAWWSSVEERLRRTRQAPMVEWEDMKARLEAKYLPINYEQLIYEDMLQWNQNNRTTVDQYTERFHE
LTVRSKTNETESQVLARYLKGLKPDIRKDMLTARLYNVEEAYQLALQFERQTSNNTRRFYSADSGNFRFPVPTSAKPTVE
STRGNVNGDFKGKEKAFGEGPQCYKCKGRGHFAVVCPTRDQRVAYICEKDLVFDDAEINHEEDHIQEETDSKEERLQATD
LPICVIQHVLTGHKTKEDVDHDWRRTNIFHTRVAYGDKALNVIIDNGSSMNVVAKEIVERLGLSQETHPTPYQVRWINDN
NSILVQSRCLVKFSFGKKYEDQVWCDVLPMTVCHLLLGRPWMYDRRVNYDGLENTYSFKMHDRKVVLEPLHISAFEGPKK
SNLMLTMRQVKEAMQDGNILLFLVGRESKQLDGKVPESVKFLLQEFEDLMPEDLPQQLPPLRDIQHAIDFVPGSSLPNLP
HYRMSPTEHAELQRQVQELLTKGFIRESLSPCAVPALLTPKKDGSWRMCIDSRAVNKITVKYRFPIPRLDDMLDQLGGAV
IFSKIDLRSGYHQIRVKPGDEWKTAFKTKEGLYEWLVMPFGLTNAPSTFMRVMTQALRPFLGKFVVVYFDDILIFSKSVT
VHLEHLRQVLETLRTEHLYINKGKCSFLEQKTNFLGFIVSHKGVEADSSKVQAIREWPEPQSFFDIRSFLGLATFYRRFV
PGFSTITAPITECLKSKIFKWTPAAAKAFDEIKQKMSSAPVLKLPDFSKVFEIACDASNVGIGGVLSQEGHPIAYFSEKL
NESRRKYSAYEVEFYALVQTLKHWRLYLVHREFILFTDHDSLRHLNSQNRLNAKHARWFDYLQQFNFTIxHTAGRENKVA
DALSRRPHNLTTFTVNAASFEAMKDDYASDKHFKDIWAALQSNTSTKTDFSVSGGYLTKNGRICVPGGSIRDFIIMELHG
GGLAGHFGFDKTYLLVADRFFWPHMRRDVHTIISRCRICQVNKGTKQNTGLYTPLPIPHHPWVDISMDFVLGLPRTQRHN
DSVMVVVDRFSKMAHFVPCHKTYDASNVASLFLKEVVRLHGLPTTIVSDRDVKFISYFWKTLWAKLGTKLAFSSAFHPQT
DGQTEVVNRSLGNLLRCLIDDHATSWDLILPQAEFAYNNSVNRTTGSSPFQLVYGMTPRTPLDIISLPLPQRTSEAGLDF
AAHMMSVHEEVRKKIALQTEVYAQRANLRKRDKQFEVGDQVLIRLRSERFPPGSYNKLHARRAGPFTVLKKLGPNAYVID
LPPTYAISPVFNIEDLTAFNGQNDFPSPLDDIPIRVPSTPSPSDGILAVLDHQFVSTRRGGYYKFLVQWAHKPLSDSVWL
QGDEVHRLAPEVYRDYIQQYLPEASSLGGR
>Gypsy2_pol#LTR/Gypsy 1715-4545 via tfasty with Gypsy6_pol, 2 framehsifts [Drosophila fruit fly genus]
FFILPDLSTFDGIIGLDLLAQAGASLCLASGQLKWGTEVEKISFHKCTDVNFTDVDCSDAPASVRETFRKLLKARKKAFA
DPNEALPYNTSVVATIRTVSEEPIYAKLYPYPMGVADFVNKEIQDLLRNDIIQKSASPYNPIWVVDKKGTDDTGNRKKRL
MIDFRKLNEHTIPDKYPMPNISMILGNLGKERYFSTLDLKSGYHQVVLAERDREKTSFSVNGGKYEFKRLPFGLRNAAGI
FQRTIDDILLEQIGKFCYVYVDDVIIFSQDEEAHIKHVDWVLKSLQEANMRVSIEKSCFFKKSVSFLGFIVTSNGATTDR
LPEKVKAIKKFPEPKTVFEVRSFLGLPSYYRCFIRDFAAIARPISNILKGENGIVSRHRSRNIQVHFSESQREAFQKLRN
ILASEDVMLSYPDYKKPFDLTTDASAYGIGAVLSQEGRPITMISRTLKGSEANYATNERELLAIVWALVKLRHYLYGVKD
INIFTDHQPLTFSVSESNPNAKIKRWKARIDEFNARLFYKPGKENLVADALSRQQLNVLEQEEPESCAATIHSEVSLTHT
IESTDKPLNCFQNQIILEEARFPSKNTLILFGNKRRHTVNFVCRGSLLDELADIIVPRAVNAFHCDLHTLAMIQDEIVRR
FPATKFRHCRNRVVDVLRIEERREILTAEHNRAHRAAHENVKQVLSEYYFPKMAKLANEIVQNCRTCARAKYDRHPKKQE
LGETPIPSHTGEMLHIDIFSTDKKFFLTCVDKFSKFAVVQPIASRTIEDLKPALLQLMNFFPRAKTIYCDNEPLSVTNAP
PLHSTSNGQVERFHSTFLELARCTKIDKGLSDTVEIIMLATTQYNKSIHSVIDRRPADIVLTHPEEPQLEIHNRIQKAQT
ALRARENASRQNRTFDVGEKVLVKSNRRLGNKLTPLCEEKAVEADMGTTVLIEGRVVHKDNLK
>Gypsy4_DR_pol#LTR/Gypsy 1946-6397 [Danio rerio]
MKTCQVPLVGKKSTLKCLISGYPVTVLFDSGSQVSIVDRQWAKKYITNHPVRPLRELMDDELEVYAVNGQTVPYDGWVEL
TVTLAGHEDPNLTVKAPFLVSQLPLPQPLVGANVLGVIIQRQQSDRDANAVLYSLLRRAFEVDEEQVAAIVNFIQVPQQT
DCTPATVRVGKDNVIIPAGKAVQVWCRVPPNFGITDPFVLYEPLEDNVALRHLSIGEGLLGVNMTQRPYVKIPISNHSKD
DVLLPKRTVLGTIQHVAKLIETETLETTSSQSTPITISATGVDKTTPPCDSPTDSWLPPVNLTHLSPDQQKSVEKVLVEE
CRAFSRDSGDIGCIPSLQMEIRLKDDTPVQRAYASIPKPLYREVKEYIQELLVKGWVVKSQSPYAAPVICVRKRDGTLRL
CIDYRLLNNKTVPDKHPLPRIQDLTDSLGGYSWFSILDQGKAYHQGFIAEGSRYLTAFTTPWGLYEWVRIPFGLSNAPAA
FQRSMEEMLDTLRDECCIPYLDDVLCFSKSFDEHVQVLQKVLKALQRHGVKLKPEKCELFRKEVRYVGRLVSAEGVKVDP
KDIEAVQALKHRKPQTVGDVRQLLGFLSYYRTYVQDFSRIAKPLYDLLQVKTDISHTKPAKGKTKHPQQSSRAPIHWERE
HQDTLERLIDMLTQPPVLAYPDFTCPFILHTDASQKGLGAVLYQNQDNKMRVIGYGSRTLTPAEQNYHLHSGKLEFLALK
WAVCDKFKDYLFYAPHFTIFTDNNPLTYVLSTAKLNAVGHRWVGQLADFRFDIKYRPGKVNIDADVLSRCPLDINTFIKE
CSEELSQDAVNAVWEGNRRAKQGDVPWVAALSLASLDQPLKEPLQTISHDELVQKQMADPVIGKVLEMKVNDITLSEDNR
AKADTNTKRLLREWSRLYIENGLLYRKTTERKQLVLPSVYKQVALTHLHNNMGHVGVEKVLSLARERFYWPFMKREIEEY
VTRKCPCIKQKRPATHERAPMGSITSNAPLELVCIDFLHLESCKGGFEYILVLVDHFTRFAQAYPTKNKAAKTAADRLFN
DFIPKFGYPSKLHHDQGREFENELFKSLRQLGGVGHSRTSPYHPQGNPVERLNRTLLQMLRTLGEKEKQNWKDHLPHVIH
AYNCTKHEATGFSPHYLMYGRHPRLPVDLLFGLQTADDETPHGFADKWKGKMVEAYRIANTNSQQSSLKGKVHYDKRCKG
VTLQPGDRVLVRNLNERGGPGKLRPYWEQTIYIVREQVGDNPVYKVSPETGGRPIRTLHRNLLLQVNDLPVEIVQHPTAK
PQRRDKRPKERSKTPDQSQSPENSDSEGETPLYWFPAPVSHPQIEHPQATKPTHIVPHHRPESHKNSQVEQDTYMNAEKE
QVISMDNVENADLPLSDDVQEEPQLHEEMEIQEYSPQPVSCLGPEQDLETPPRLRQSTRQRQPKRIFTYPSLGQPDYRTC
PTVNTVNVQPTMYPLLHYHAFYPQPPPITSNPYLQMPYAVACF
>Gypsy5_Dpse_pol#LTR/Gypsy 3678-6770  [Drosophila pseudoobscura]
NRSQRRRSDFKKHCKLEKRLLLASVVGKPNDLRPHAQIMLFGKPVIGLMDTGASVSCIGGSCASDVIRNKVQYKPLSLKV
RTADGKSQSIVGKISAKVTYRGESKDPSLTGNLYLGIDFWTAFELLPLHLMTQNLRIETLEDPTMRALLPSQQVLLQEVI
ALFPSYSKQGLGKTSVITHTIEVADAKPIKQRHYAVSPATEKLMYEELDRMLKLGVIQESVSSWSSPVVLVKKPGKVRLC
IDCRKVNSVTVKDAYPMPLIDGILSRLPKAEFITSIDLKDAFWQIPLDQKSRDKTAFTVPGRPLYEFVVMPFGLTNAPCT
LSRLMDKVIPAHLRNEIFIYLDDLLVISDNFEHHLEVLSLVASQLSKANLTINVEKSKFCRKEVKYLGHVIGGGNIRTDP
DKIATVKDFPAPQSIKQVRRFLGMTGWYHKFIHNYAAISSPITDTLKSKRKFIWTDEAQLAFESLKSQMCSAPVLHSPNF
SIPFSIHCDASHTGVGAVLMQENNEGADVPIAFMSKKLNKCQRQYTVTEKECYAAVLAVKKFRAYIEGQEFTIITDHASL
KWLMSQADLSSRLARWSLKLQGFEFKILHRKGSDNIVPDAVSRTHSEDLSFLAIDSMLVDPDSPEFKSPEYQSIKEKIRL
NSSRLPDLKIKDERIFRRAEHADGTKITDDSCWKLWIPPSLVKPVLKAAHEDPLCAHSGINKTLERLRRSYYWPNLAVDV
KELINNCHICKTTKHPNQPLKPPMGNTGLPSRFFQKLFVDFLGPYPRSKSGNIGIFVVLDHLSKFPFLKPVRKFTADSIK
RFLEEDLFHCFGVPETIVSDNGVQFKSHTFNSLLDKYNISHVYTAFYSPQANASERVNRSVLAAIKSYVDPDQRNWDEKL
SSICCALRSSHHLAMSTTPYRLAFGQHMVTDASSYKLMRNLDMLEDRGVQFSREDSFDIIRSKAKGSIQAQHFRNARSYN
LRTRQISYKDGQEVYRRNFQQSNFAKGFSAKLAPTFIKSRVRRKLGNCYYELEDLQGRLVGKFHTKDIKP
>Gypsy4_pol#LTR/Gypsy 1660-4791 [Drosophila fruit fly genus]
FFRGHSLLPYITRTVAGQTIKLLIDTGTSKNYIKPLLGLPHFVPVDKPFQVKSLHGHTRIERKCQIQLFKTKTYFFILEN
LSDFHGIIGLDLLKKINANVDFEKNCITYDRGSEPIKFTKCQNVNFIKIDDGDVPEVIKDDFNKMINKRTGSFADVNESL
PYNINTVATIRTDGEPVYSKLYPYPMGVSEFVNAEVKQLLANGIIRPSKSPYNNPIWVVDKKGVDQSGHKLKRMVIDFRK
LNQKTTDDKYPIPSISTILSNMGEAQYFTTLDLKSGFHQIELAERDREKTAFSVNNGKYEFCRLPFGLKNAPSIFQRAID
DVLREQIGKTCYVYVDDVIIFSNNKEDHVKHIDWVLNSLQTAGMRVSQEKSKFFKKSVEYLGFTVSRGGIQTSPSKVQAI
KDFKPPKTLFSLRSFLGLASYYRCFRKGFANIARPLTDVLKGENGKISANNSRKVNLELTQDQLKAFNRLKDVLASEDVI
LAYPNFKKPFDLTTDASGHGLGAVLSQDGRPITLISRTLRDNEVNFATNERELLAIVWALKNLRNYLYGVKNLNIFTDHQ
PLTFAVSDRNPNAKIKRWKAFIDEHNANIFYKPGKENFVADALSRQNVNVLEDCPNSDIATIHSEESLTYTIETTEKPVN
CFRNQIVIEESNAPSVRSTILFREKTRHVIRFVDRNTLLQTVQDVVNAKVVNAIHCDLPILAFIQHSLVKAFPSTTFRHS
KNIVIDIVDKTEQREIIIAEHNRAHRAAQENVKQILRDYFFPKMNSLATEIVVNCKVCSMGKYNRHPVKQAMGETPIPSY
VGEILHVDIFSTDKTFFLTCVDKLSKFAVVQYITSRAIVDVKAPILQLVNLFPKIRIIYCDNEKSLNSETIKNILNNFDI
QICNAPPLHSTSNGQVERFHSTLTEIARCLKIDKHLNETKDIILLATIEYNRSIHSVTNRKPTELICSAPSDLLTETRDK
IVLAQEKQLGYMNRDRIHKKYKVGEKVWLKSNKRLGNKLSPLCTEEAIDADLGTTVLMKGRGWSIRTTLSKPKKKKLKTN
INK
>Gypsy13-NVi#LTR/Gypsy 243-4225 via tfasty with Gypsy10-NVi, 2 frameshifts. [Nasonia vitripennis]
MANQIINVGASLGSLREFKSGEDWNVYEERLEQYFIANFVQEDRKVSVLLTSIGEEVYKTLRDLCDPVLPKGKTYTELCA
ILKRQFSPRISVFKERKNFYDLKQSANETVSLWYARVKKRAVNCEFGANLDERLKDKFVTGLRPGKILDRVCEESHSVSL
KDLLEVALKKEATIDTSSIAAAAEDAASVHAVSAKSGGGHGRKEGRGSNSSAKPKQTSKQEATCWHCGGTNHDFSRCKYR
LYDCSKCGQRGHLQKICKKKDASGKQNASVSTSKGSGRKGTTNFVEKEAGEASSDESCEDILNVYAIAKVCKTRIPPETI
DVKIAGRKVTMEVDSGAVLSVIPEALYRNKLAGCKLESSSKLLRMYDGTKVTPLGEIKVEVVYKNKSVKCTMVVVKRNDE
TALMGRELMQAFGLRICEVNALSVEDVREQIFKEFKEVFDDQLGRFKGEPVDLKLKADARPIFMKPRPVPFAFKKDMDKE
LDRLEKANIITKIDNCEWGSPLVPVLKPDGTLRACADYSVTVNSMLEDVIHPVPRIEELFTALQGGKLFTVLDLAHAYNQ
LEVSDSTKRLLAWSTHKGIFAMNRLSYGTKPAVAIFQRLMEKVLLGCKNTINFLDDICVTGETLEEHVNNLKEVLGRLQK
FGLKLNFKKCKFFQSKVEYLGHVIDKNGLHKKTDKIEAITKAPRPENATQVKAFVGMVNYYGKFIPNLAKKLSPMYKLLK
KNVVFKWNEECEKSFKEIKKEIVSENCLVHFNPDLKIKLACDACRDGIGAVLLHIFPDGTERPICFASRTLSKAEKNYAT
IHLEALAIYWGVKKFYQYLLGNHFVLESDHKPLLALFGEKKGIPLMAAGRLQRWALFLSGYNYVFKHVKGMSNGGADGLS
RLPIKSTEKEGEERSEYFNFYVEERLPIDARLIKKATRTDQILSKVLLYTMTEWPNKVDEGLKAFFVRKNEISVENGMLF
WGYRVIIPGKYTAEILDEIHATHFGASKMKALARQYFWYPNMDSEIEKLAQSCDICRRNADNPNKATLLKFEETKQPLDR
IHIDFLGPFEGCTYLIITDAYSKWPEVYKMNKCNATITIEKLRDYCARFGLPKKIVSDNGAQFTSEEFQKWIKMNGIKHV
RTAPRRRNESELNRERQIENYKGKRELYFEPNDFVYVRDYRTPNKPKWAKATVCEALGPRNYLCKIHEDENLIWKRHLDQ
IIPKGGFFENVCEEVPAEVLDKDKIMLENAQELVPEIESCRAEIPVPMESAVLIESSEPESTSETTTAVTPPNEGFKNVN
EGMRESDKRNDSPKTTNMALAMVNKPLTLNVNERPKRTIKRPDRLNL
>Gypsy37_DR#LTR/Gypsy 512-5122 [Danio rerio]
MTSVEEFCSAPSDELLNLCSKKQLWEIVDRYELSGVDKRMRKDEVREMIRVKLSELQVLPVTSRRATAGVNPAAEKMSFV
GLSFEQQKELIRMQQLHEKEMRVSEMEIEKLRLDDLMRKREMEFEKIKHEQKLAVERQNQEFQLKFESLKLQNASGSPVH
RTDGSFNLINNLKLLPVFNERDPDVFFSLFESIADERDWPETDRTVMLQSVLVGKAQEAYTALSVDERKKYDSVKSAVLK
AFELVPEAYRQRFRTWRKGERQTHVEVTRELGNHFDRWCSTSNVKSFSELRELMIIEQLKNIVPDQIAVYINENKPRTAA
EAASLADDFVLTHKNRFSSGNRGNGNVHFKQSQQIDPYLHSRRAISDSTCRYCLEVGHWKNECPLLKNKQIRGKNKNTAP
VLLTNCFPQTPAVCSTDDSVIKGNCSEIKGNTGYAPFISQGCVSLLEEHESVPVRVLRDTGSSESFILESILPFSSSSYV
GKNVLIRGIALQTLSVPLHKFSLQSQLVNGEVIMGVRPSLPVEGVDIILGNNLAGESVWPVMTPAPIVTTSSVLDQECCE
LSEDVSCVVTRSKSKMLNESNLNDTRVPVESVAPGLSLLSKISRAEFIVAQRDDPGLEKMFAAVLPPEEVESAATGYYIN
DGVLLRKWLALHEDGGGESVVQVVVPEKFRDVVLKLSHGDLAGHLGVKKTYSRVLQHFYWPLLKKDISRFIRTCHTCQVT
GKPNQPLKPAPLYPIPPVEQPFEYLLIDCVGPLPPSKSGSKFLLTVMCQSTRYPAAYALRNITTRSVVKALSQFISIFGI
PKVIQSDQGTNFTSKMFAEILKQLGVKHHRSSAQHPQSQGVLERFHQTLKCLLRAYCVELNRDWEEGLPWLLLASREVTQ
SSLGFSPNDLVFGHKIRGLLSVLGDQLKGKQPPQSLLEYVNGFKRRLILAGQAAKENLEKAQIKMKTLFDRRSEQRVFKP
GDQVLALLSLVSSPFCAKFVGPYTVVRALSDLNYEIATPDRKKKTQICHVNLLKPFFSRDCQADIKSSGVISPAIEALGQ
SSAGDREGGKFLDDAVVPPRLKNSETLKELEDVLSHLTVVQRAELSHLIREFPSLFGDVPSQTHLIEHDVDVGDALPIRQ
RFYRVPFEKRIKLESEIQYMLKNNIAKPSCSSWASPCLLVRKPDGTDRFCTDYRKINKITKPDAFPLPRMEDCVDQVGSA
RFVSKLDLLKGYWQIPMSPRAQEITAFVTPSGLYSYSVMSFGLRNAPATFQRLMNRVVSGLEGCAVYLDDVIVYSENWDQ
HMRRVRELFKRLAEANLTVNLAKCEFARATVSYLGKEVGQGMVRPLRAKISAIDNFPIPCTKKELMRFIGMASYYRGFCP
NFSSVICPLTNLLKNSAKFDWNPHCQKAFENVKLLLTATPVLAAPQSGLPFEIQVDASHVGAGAVLLQTHSDGLSHPISY
FSRKFNSYQLNYSVIEKETLALIWALQHFDVYVGGGSPVVIYSDHNPLTFLHSLQSPSQRLMRWILFLQPFNLTIKHIKG
IKNIFADTLSRAPVEE
>Gypsy36_AG#LTR/Gypsy 1017-5357 [Anopheles genus]
RCAFGVRKRVAFSSILARYIQKKMERFLSEYTRAGLVRMCETAGLALSGTKEELAKRLLEAGVTSDGQREENIGEINASG
YFDVDADSETGSNGATAAGGAMAVTAESRAIVTEVVSQKMDVPRSIETHAPFVQPYSFRDVEEGIDPYGNDLTKDIGAWF
DDFEGVANMAHWTDEQRFIMCRRKMVGVARSFLSTERNIISYAALRSKLMKEFGEIVRSSDVHRRLMSRVKRPQETMLEY
VYEMQRIARDTEIDVESIIEYIVDGVACDTKVRASLYRARSMAELKEELLRMERAEKKSVVKRNNGQQDQRNGGVGLRKC
YICGELGHEAQKCVKSTKCFECGRSGHRAKDCSIKKRLVADTRAIVPSTNERSPVKCFKCGGVGHIARNCNKNSYSVMGG
QIQESNKELPTKQVSVCGKEYAALIDTGSEVSLMREDVFAGLPPQFKQWKQSNHILRGLGGVPQNGFGEATLAVNIDNWV
YQVQWVLVPYEAIRTPLIVGMDFLHSVNYNINNETVMIEPRRNEHVLGIQRNEEEHERQQHVNNILSEVMNTMCASETME
PVIPPQFRGEIMTMIETYNNTSCSERKETCPVKLEIVPDGQIMPFRHPPSRLSFSESEAVDAQVDEWLKEGIVRPSVSNF
ASRIVIVKKKDGSNRVCVDYRKLNSMILKDGFPIPVIDDVVQKLQCAQWFTVMDLENGFFHVPVAENSKKYTAFATRRGL
YEFNRAPFGLCNSPAVFIRYVNHVFRDLITNNLLDLYMDDMVIHGSTERECLWKTERVLKVAAEHGLNIKWKKCQFMQRE
ITFLGHRVKTGQISPSVEKINAVKHFRIPQNVKAVQAFLGLTGFFRKFVKDYSKIARPLTDLLKKDTSFEITGSALEAFK
RLKEELIKEPVLRLFDPEAKTELHTDASKAGFGATLLQWVEGKLHPVYFWSKKTSEPESNKHSYVLEAKAVFLAVKKFRQ
YLLGRPFKLVTDCAAFKCTLKKSEVPQEVLPWVMFLQDFVFEVEHRSGKKMQHVDCLSRYPTEVMTVTNELTARIRKNQQ
QDEMVKAISEILLDRPYGSYKLKGGLLYTVVDGNELLVIPRNMRKQIIENAHNDGHYGAQRTMHTIRQKFWIPHLEVLVK
QHISNCVKCILHNKKLGRQEGCLNPIDKGDAPLRTLHLDHVGPMDATSKQYRYILTVVDGFSKFVWLYPTRTTNAEEVLQ
KLESWSSIFGYPTRVITDRGAAFTAKVFAEFVQKQNIEHIVSTTGVPRGNGQAERINRTVLSVLGKLSMGDTAKWYKQVN
RVQRSVNGHLNSSTGRSPFELMFGVRMRQASDDLLHEMLEKEWYEEYERDRQGMRQEARKEIELAQKRYKEQFDKKRKPE
HGYKIGDLVAIKRTQFVAGRKLANEFLGPYEITKVKRNGRYDVKKAASCEGPQVTSTSDDNIKLWSYATIESSDEDELDE
DQELKE
>Gypsy39_AG_gag#LTR/Gypsy 574-1653 [Anopheles genus]
MPKYTPFPKVRSLNFTKDKKIPVKMEQNIHALIESMRSLEERVNTLQAENDSLQRFQQQQQPTTSSRSADYFRIPDPIRV
IPGFDGNKKQLIGWLTTVKKTLDLFKNNVAPEIFSVYEQTVINKIEGKARDTICVNGNPTTFDEVADILQNVYGDRNNIA
TYQTQLWNLKQNESLSLHYRKTKEILINMKSVARQNTVYASHWEAINLFLEQECLAAFINGLSKTYFGYAQTAQPEDLES
AYAFLCRFQNAERTKSNTNNGFEKHPSVDKNVKRDNKFSQPKHLENRPFNNMKPSSDRTKIVPMDVDQSLRSNMRNKIFS
HTAEEDDGKTISEESDSDEETDNEEDVNFQITANLNPPS
>Gypsy42_AG_gag#LTR/Gypsy 481-1602 [Anopheles genus]
MHVNSSANVKPRIELSVLFKNLSASEESSDSELSGEYSNIPLQDSSLPNLDQLNINTIEMEPTEQLKIMNQTIADLQEKI
AVLTIQQSQPSIDVASFFRIPDPIKSLPSFDGNRKQLSTWLTTTEETLNLFKDRVTGEVFKMYLTAVINKIEGKARDILC
LAGSINDFESLKEILFDAFGDRQELSTYKCKLWQNKMVDGMTIHKYYQKTKEIIQCIKTIAKQTQAYKDNWAVINQFIDE
DGLAAFISGLKGMYFGHIQAARPKDIEEAYAFLCKFKSHEITADCMVQKPPNQQKNSFFQNNRTATTQKSHFAQNQNINR
EPYPQPMEVDNSMRSRLTLNKRTINNFEVASQDDNSANCEQNFHLDSPSTSIT
>Gypsy41_AG_gag#LTR/Gypsy 501-1583 [Anopheles genus]
MKATERFDSHRDLSTSDNLETEGDKMEEIATQLVEMMRAITSLQNQYTALSASTSSSNAGNNRAFDDYFRIPDPIKSLPT
FEGNRKQLASWLSTADNTLALFKDLVPAAVYQMYVTAVTNKICGKAKDILCLSGSPQNFDEIKEILISSLGDRQELSTYK
CQMWQNKMTDGMSIHKYYHQTKEIVQNIKTLAKQNEQYRTNWVAINAFIDEDALAAFIAGLRGNYFGHAQAARPKDIEDA
YAFLCKFKATEQNAGSLTKNVQTPSNKPPFKNKFNQNESTSYNKPTKAISEKKFSIKNSDKPEPMDVDASMRSKYAQNKK
QFHNNEVETEQESNDSDSDDETDHFNEVNFRLAGSLKNNT
>Gypsy22-PTR#LTR/Gypsy 22-4503 via tfasty with Gypsy1GM, 2 frameshifts and 3 stopcodons. [Populus trichocarpa]
MATNKxRIELLETRLGGVQDDIQRLEDSMINRLHNLEETINKLSEAMIASKASSSYHNNDRDGFSRTHRDDTDWGKKKTD
NECGCHVFSSKMAKLDFPQYSGDDPTEWFNWVDQFFEYQETVDNQKVSLASFHLEGEANQWWQWLHRAYKEEGRTVTWEI
FEEELWARFGPTECEDFDEALSKIRQVGSLRDYQKEFERLGNRVHGWTQKALVGTFMSGLKVEISDAIRMFKPRTLKKAI
SLARMKDEQLTRKGNLHGQHNQLAHHxLFPPPKSSFPVPIKRLTWDEMQRRRAQGLCFNCNDKFTAGHKCQRPQLLLLES
LSEPVRVMCEEVTDDIPVEDIAEENTEPEISLHALTGWSTPRTMRIEGRVGNHTLTVLIDSGSTYNFINSKIAEELQLPI
IPMGPFIVRVADGNRMKCQGRFEQVQVILQNIPFSLTLYLIPITGLDLVLGVQWLEQLGPVVCNWKKLTMDFWWKNQAQT
LNGSNSQAIQPASLTAITKDVCHGCSTFTVYCQSIEKMERPNMQTNMKEIINNFEDIFYEPTQLPPSREVDHCIPLKEGI
EPINMRPYRYAYFQKTEIEKQVQDMLKLGLIKPSTSPFSSPVLLVKTKDGTWHFCTDYRAFNSVTIKDRFPIPTIDDMLD
ELYGAAFFTKLDLREGYHQVRVNPKDTHKTAFRTHNGHYEYMVMPFGLCNAPSTFQAIMNSNFRPHLRQFILVFFYDILI
YSPNWTMHLEHVTKVFEILRQHIFFVKANKCTFGQSELEYLGHIVTNKRVKVDSSKITAMVNWPRPSTISDLPGFLGLTG
YYRKFVRNYGLLAKPLTNLLKKGQFRWSQEAEAAFLQLKQAMTTTPILAMPNFNESFTIETDASGEGIGAVLTQQGKPIA
FLSRALGVAKLSWSIYAKEMLAILQAIRTWRPYLLGKKFFIQMDQRSLKYLLEQRIGTPEQQRWVAKLLGYDYEIIYHPG
RDNSAADALSRVSGSPILNALFVPQVSLWEDIKKGLTGHPYMEQIIQQARTSPGKPYTWRDGLVFFKTRVVVPPNTAVIE
QLLQEFHDTKMGGHSGILGTFKRLSQQFYWPSMYRSIKEYVHTCVTCQKTKADNLKPAGLLQPLPIPCQVWDDVTMDFIE
GFPTSHGRDTILVVVDRLSKSAHFLALAHPFTAKMVAEKFVDGVVKLHGMPRSIVSDKDKVFISKFWHEFFKMSGTQLKM
SSAYHPQTDGxSAVVNRCVEQYLRCFVHQRPQQWSQFLPWVELWYNTAYHSSTGMTPFQALYGRLPPTFPLYATGSSPVN
EVDHSLQVRDTLLRNLKQNLANARNRMKQLADRGRRDVEFIEGDLVYLKLQPYRQHTAFRRAHQKLACKFYGPFPIEKRV
GAVAYKLKLPEGAHLHSVFHVSLLRRKLGDKADTSMELPSIDEEGTIVVTPEAILDTRWIPHGARFIEESLVKWKHLSTD
DATWEPTAELLTNHPSLDLGDKRPLDVGGNDTQLGELLPRRTQRIIKKNLKYRD
>Gypsy17-PTR#LTR/Gypsy 37-4626 (1 stopcodon) [Populus trichocarpa]
MPPETRATDIKRIEDSIAAVAQDHGQKYELLVDMFKGQTLKIDQTIENQGGQINDIRNMMGTMAQQLEYTLQKISQASSS
SSLSRDKQSLHPDRADLRGKELREDRFATYKVHKPKHFFPTFHGEDVHKWLFKCTQYFEIEEVADSDKLQIASYYLDGVA
LYWHQNFLRSLEGQNTSWEEYVEAICYRFGGRKDPLEELMELRQHGDLEEYIQDFDILWNKAEINEKQALVIFLGGMELE
IKNTVKMFDPKTLKHAFNLARLQANTLSYRKSPGYIRKTSTLCTNPTANTPLTFPQQNPRNPANSQANPSKPNSVQWTTN
PNNNIYPNSSKPTKFIRNQEFEERRLKGLCFWCDEKFVPGHRCRNKKVYSLSVVEEEEVYQEEEVEAEEAFSREVTPHIS
LDALEGTVGLNTMKVNGKMEKTTVCILIDSGSTHNFLNSAVVRKLRYHLTPIKPMTVQAANGDKMVCKSMCKGLKxKMQG
ISFQADVYIIDLSNCEMVLGIQWLSLLGDILCNYKHLWMSFDWQGQRVLLKGENPPKFQGIELKQLSALVQSRQPGEDYL
IYSLQLMEVEEVSQGHNPQFQGVTDTSLLTLLESYQDVFQEPQGLPPLRDHDHKIPLKTRSEAVNLRPYRYSGLQKDSLE
RMVTEMLDTGIIRTSNSPFASPVILVKKKDSTWRLCVDCRALNQLTIKDKYPIPMIEELLEELVGDTIFSKIDLKSGYHQ
ICMAVGEEFKTAFRTHSGHYEFLVMPFGLTNAPATFQSLMNEVFRKHLRKFILVFFDDILVYSQTMIDHYEHLAMVMQLL
RTHQLVARATKCFFGHSQVEYLGHIITEHGVATDPLKIQAIVDWPIPQTLKQLRGFLGLTGYYRRFVKGYGNISKPLTLL
LRKDTKGWNEEATHAFNNLKVLMTSAPVLALPDFTKVFVVETDASLTGIGAILLQEGHPIAFISKSLGPKQQTLSVYERE
MMAILHAVTKWKHYLWGRHFHIRTDHISLKYLLHQKLTTPAQHLWVVKLLGYDYDIEYKQGRENVPADALSRIPSQEIYA
LTTSTISTSLMEDIKSSYQNDPMIQTIIKDLLSSADSHPHYTWVHDHLNRKGKVVVGNNRAVRSQIIALFHNSAVGGHSG
MTVTSKTVSSLFYWKGQQKHIREHVRECTICQRNKHENVASPGLLQPLPIPSAPFIDISMDFVEGLPKSEGKDVIMVIVD
RFSKYAHCVAISHPYAAPTIARAFMDNVYKLHGTPASITSDRDPVFLSRFWKELFNNQGVNLNHSTAYHPQTDGQTEVVN
KCIEHYLRCMTGDCPHQWAKWLPLAEWWYNTNYHSATKMTPYEVLYGFPPPIHIPYFPRDSAVASVDEYLNTKEEVIKRV
KAHLQLAQNRMITIANRKRSDRSFEIHDYVYLKLQPYRQQSTTYRSSQKLAAKYYGPYQVIAKMGTVAYKLELPSSSTIH
PVFHVSQLKKHVGNQVVQQSLPITSPGPTLQPRAILDRRMTRQNNQAATQVLIHWAGLPPADATWEFTTELKLRFPTFNL
EDKVGFMGEQ
>Gypsy13_AG_pol#LTR/Gypsy 2193-5933 [Anopheles genus]
SLQYTSCRRGTFFRGTTGVRRNHSTYKRWSTLAINLNANNFIKIKVEMAMGEISILIIDTGADVSLFKVDKIKPTQQVYA
QNRINLTGITTESVSTLATTSTNITFGNASINHTFHIIPAEIDIKADGILGRDFFTKHRCVIDYEHWLLNFNCNGVTISH
PIEDSINDGFILPLRSEVIRKINLPDLVEDSIVLASEILPGVFCGNSVVSKQNQYVKFVNTTESNVYIEKDSFKPQIDPL
KNYIQKNLKFKSSKTNESKIKTLLSKIDSQNVPKYIIPHLEKILSEYHDIFCTDNDQIPTNNFYEQSIQLKDNVPCYIPN
YKQIYSQSDEIKNQVDKMLKNDIKEHSVSPYNSPILLVPKKSGDNEKKWRLVVDYRQLNKKIMPDKFPLPRIDDILDQLG
RAKYFTTLDLMSGFHQIPLHKNSRKYTAFSTSSGHYQFTRLPFGLNISPNSFQRMITIAMAGLTSESAFVYIDDIIITGC
TMQHHLENLIKVFNRLRNYNLKLNPEKCIFFQNGVTYLGHNITYKGIYPDESKFETIKKYPVPINVDEVRRFVAFCNYYR
KFVKNFAELVRPLNNLLKKGATFTWSNECQHAFDTLRRSLVSPTILQYPNFEKEFIITTDASDVACGAILSQITDGNDLP
IAYASKSFTKGEKSKPTIEKELTAIHWAVNYFKPYIFGKKFNVRTDHRPLVYLFNMKNPTSKLTRMRLDLEEFDFEVEFV
QGKTNTGADALSRIVIDSDKLKHMQKNNANETNDKSLLAVKTRAMTRLNNFKLPPELNEGEKDSITKPTLWQTENPTEVN
KLLKILSKTEYGKIKITVFNNNYNKELGNTTIHCNEDGSQALESALLKVQQIAKEYNRDKITISLEDSLFRQYSFHTIKE
IADNAISGLEIIAFIPPKWISKKEEIENILENYHMSPSGGHVGQYRLYLKIREKYKWKNMKEEIKNYVRGCKVCKVNKIV
RHTKEKSAVTTTPLKPFEVVCIDTVGPLPKTNKNHRYIVTMQCELSKYIVLIPTENKEANTIARAMVENCILKYGRFLEM
KSDQGLEYNNEVLKKVAELLGIKQTFATAYHPETIGSLERNHRTLNEYLRAFTNEHGDNWDDWLKFYEFNYNTTPHTDTN
YSPYELIFGKKAILPQDLCHGNIEPVYNYDAYFNEIKFKLQKSNEIARKNLIEQKERRQIRANSNVNPLIIKIGDAVYLK
NENRKKLDPIYLGPYIVVKLDNVNCTIKNTNTNKLSTVHKNRLIKG
>Gypsy17_CR_pol#LTR/Gypsy 1717-4535 (fragment) via tfasty with Gypsy6_VC_pol, 1 frameshifts. [Chlamydomonas reinhardtii]
AQPSYRRAYRLSPEELVECKRQIVDLLAKGFIEPCHSPFGAAVLFVKKKDPDSPTGHKLRMVIDYRELNKITVKHRYPLP
NIQDIFDKLAGSAVYSTLDMKACYHQFRIDPKEIPPTAFITPFGQYAWRVCPMGLCNSPSHVMAAVNTILSKAGLGEYTM
AYLDDVIIYSKSAEDHAKHLDAVLTALGQAHLRVKLSKCVFNRPELPFLGHIVGRSGLRMDPKKVQVVQDWIAPTDLKQL
RRFLGLANYFRRFIQGYASLVAPLTALTGSKTPWQWCDACQDAFEAVKKALISAPVLALPDLNKPYEVISDASLYGTGAV
LMQEGRPLAYLSHRFTPAERNYTTTDQEALGVINALREWRCYLEGAPNVTVVTDHQPLTHLATLRADGLLSRRQARWIEF
LQSQMVTWQYRPGRINVADPLSRVYEGAPDMREGPPPNQPQVAAMTRSSAHTDVHKRISSSYQRDAWFRKPSNTAELRKV
NGLYYRGDQVVVPNDDELRTMLIAAHHDDECSGHAGPERTAEALKRVYSWRGLDADVARYVAQCSHCQRNKASTAKPRGL
LQPLPIAKRVWGSVTMDLITHLPTTPAGYDSTAVFVDRLSKMTHFAPTHATVDAEGMAHLYVQNVFRHHGLPDEVISDRG
PQFAGKFWAELQRLLKTSVKLSTAYHPQTDGQTERMNRLLEETLRHYINPAQDDWDDHLALVEFAINNAMNKSTRASPFS
LNSPYAPRTPGTIGVAQSKVPLAASFAAEMQARLQRATMCLERARTRQKQAYDSHRQDASFAVGQSVLLSTKNIALKTPG
VKKLLPKFIGPFPIEAKIGELAYKLTLPPGYRIHPVFHVSLLKPYHCKGNYQPPPPAFLDDDGNAYWTVHDVIEHRDRRV
GRKPVRDFLVKWEGFGPEHNSWEPEANLREDELVADIVDKYLVRVSLRPPPRAAKKPRLT
>Gypsy20_AG#LTR/Gypsy 110-4246 [Anopheles genus]
MALPNPVVDDPAVASPALPAVSGAAVPVTFHFEPFNPASSKFDRWLNRLQISFRIYHVREADKRDFLLHYMGGPTYDVLC
NKLKNAEPHTKTYDEIVALLKEHYSPTPLEILENFKFASRKQLEQETLSDYLMHLEKLAQTCNFGDYMDKALRNQFVFGI
QNRVIQSRLLEVRDLTLTKAKEIAFGMEMSHRGTDEMHNSRQKSEVQHIEHGANKTKKSFQSSSQASSSQSSGRLSNKQN
GGNKRCYRCGDPDHYADKCKHKATICKYCKKAGHLERMCLTKTNEKGTDDAHHLEEQPCVMKDVLHLNAIQGIAGKFLLS
LWINQKQLTFEVDTGSPVSLINLQDKRKYFNNFDISPTNIRLVSYCDNDIGVLGKITVKVVANGEEFTLPLHVAESSRHP
LLGRDWLLALNLDFNRVFQPGTHSVSYCSGKNQSTTNALNNLLTKFSRVFDERVGKIEGIQATLTVRKNTKPVYIKARPV
AFAVRSTVDKEIDHFVKEGIWEKVDHSEWATPVVAVRKAGGKVRLCGDYKITLNPNLLVDEHPLPTVEELFATVAGGETF
SKLDLSQAYLQLEVRPEDRDLLTLSTHRGLFRPTRLMYGVASAPAIFQRLMEEILQGIPGVTVFIDDIRVTGSDTKMHLL
RLEEVLNRLDKYGLRVNREKCDFFSDRIEYCGYMVDKQGIHKLREKIDAIQNMPIPKNKEQVRSFVGLINYYGRFFPNLS
TILYPLNNLLKDDVPFVWSADCDKSFTLVKREMQSDRFLVHYDPSLPVILATDASPYGVGAVLSHQYLDGTERPLQYASQ
TLTRTQQKYSQIDKEAYSIIFGVRKFHQYLYGRKFILVTDNKPISQIFSESKGLPTMSAMRMQHYAAFLQAFDYKIRHRR
SSEHFNADAMSRLPVSTTDPESEIEEPEVVEVNAIQTLPLTVDELSAATLADVNVRELLRALRTGNSVEGKHRFGVNQEE
FNLHKDCLMRGSRVYIPPALRRKVLEELHSTHFGITRIKSLARSYCWWEGIDRDIENLVNDCASCQAAKANPPKVTFHCW
ETPTEPFQRVHADYAGPFMGLYYLILIDAYSKWPMVYVVKNMTTETTIRLCREFFSTYGLPSVFVSDNGPQFTSTEFSRF
LKLNGITHKLSAPYHPATNGQAERFIQTMKSKLKSLQCDRGEVHSEICNILLSYRKMIHPATGFSPSKLVFGRQIRSRLD
LMIPSNDPNSNEVQSKIRALTTGSKVAAREYVHGNKWEFGTIKERLGKLHYLVKLNDGRTWKRHIDQLRSVGAGLSESTK
EEISLRREEIGGENFYDNTIAVTPDITTNTYNYDNTYTSTDMSLPAIPTAPNLETGIQLPISNETAAIDQPTGSADLPVD
QRLRRSLRTIKPPQRLNL
>Gypsy19_CR_pol#LTR/Gypsy 2169-6443 [Chlamydomonas reinhardtii]
GVAQREGLGGSPAAQPSFNEHESLGSGQCTHPAPHQGCQHPSHKHTHATAATAPGTTHTHKADRMFSRAEFLSLQTASGR
DFSFDAACNDEGSNAHCATFACPKRSFFKSDVGGHHVWLNPPHGQLQYWVKHYQRCKAARPFDTSAVIIAPKGSLSGKLT
TGMTLLQEYATGTLLFATSADSNQLDPAPQDLQAWYDPPQQPKLRVASPDNALIFKCRIGHTQHKVLIDTGASHSIVSKN
ALPPGLTVAPHGAKEVEVADGKRVTLEGTAQLPLHIQKYTAAVPALVMPSLLPGVDLILGMDWMRANGVKLDIPNLTCLL
TKPANGSTKHILLVADSCNKGSTAGGEDTNAGVAHMKAICAMLAATTPDLMSASAARRAMRKNVPGMLVVVREAKPDVLS
RLDTESSAPPACAAQLRTNPPIFPETPHLCATHTTPTNPTSPSPTPTIPETQLNALLDEFKDVFEPIQGPPKDRGIEHTI
DLEPGAKPVFSRMYRLAPNEREEVSKQVQELLRLGLIQPSSSPWGAPILFAAKKDGGLRMCIDYRALNKVTVKNRYPIPN
PEDLFDALHGATIFSSIDLQSGYHQIRINDKDRQKTAFRTPDGLYEFLVLSMGLANAPSVFQAVMNQVFQPYLNKFVLIY
LDDVIIFSKTPEEHIEHLRTVLTALRQEQLQAKRSKCEFNRTELKFLGMIVSKDGLKVDESKVATVRDWPTPKEVSSLRG
FLGLANYFRKFIQGYSSLVAPLTQLTGSTAEWQWGTQQEEAFNGVKFALTNAPVLRFPDPNKHYEVISDASLAGTGAVLM
QEGHPVAYTSSKFTPPERNYTTTEQELLGVIKALKQWRCYLEGPQITLVTDHNPNTFIDSQKSLAKLSRRQVRWIEYLSR
FHYTWEYRPGRINVADPLSRMHATVLAAKAQSRYSLTSSLPGEIRVSYSHDPLFVDARALARHGVTYDQTDGFYRCQGKI
VVPNYNDLRTRIIRELHDSPYAGHRGIERTLELVQREFWWPGITSDVRRQVLGCELCQRNKPLMQKPAGLCKPLELPRHV
WTHVSMDFITHLPTTRDGHDTIVVFVDRLTKMCRVAPTTETITAEDFAQLFLETVWRSHGFPEEVVSDRGSVFVNKFMAE
LYRLTGTKQNVSTAYHPQTDGQTERMNRVLQEILRNYVNPTHDDWDKKLPLVEFAINNTYQESIKATPFQLNYCRNPRLP
TLGSADSKVPAAARFCSDIEESIQRAKRCISAAQERYKHYADRNMREVSYKVGDRVLLNTQHINLKHPGTKKFLPLWIGP
YTVTQTIGPVAVKLDLPANYRIHPVFHVSRLKPHKQAPGSVWTPPPPVAVLDDGAYWSVDRLLAHRDKKRGGKTVKEYLV
SWEGYGPEHNTWEPEAHITESAIDEYWASQATRRSKRKVAADTAPAPAAGVTPTAPPRKRGRTA
>BCBOTYPOL#LTR/Gypsy 76-1224 [Botryotinia fuckeliana]
MPVHTPIYSMSADELKRLREYIDDNLAKGWIRESASQVASPTMWVPKKDGPDRLVVDYRKLNTLTKKDRYPLPLATELRD
RLGGRTIFTKMDLRNGYHLIRMKEGEEWKTAFKTRYGLYEYQVMPFGLTNAPATFMRLMNNVLSQYLDTCCICYLDDILV
YSNNKVQHIKDVSNILESLSKADLLCKPSKCEFHVTETEFLGFTVSSQGLKMSKDKVKAVLEWKQPTTIKEVQSFLGFVN
FYRRFIKGYSGITTPLTTLTRKDQGSFEWTAKAQESFDTLKQAVAEEPILLTFDPEKEIIVETDSSDFAIGAVLSQPGQN
GKYQPIAFYSRKLSPAELNYEIYDKELLAIVDAFREWRVYLEGRYTVQVYTDLVTSPQRAYR
>Atlantys_OS_pol#LTR/Gypsy 3708-7013 [Oryza sativa]
MENPSYYFEGVVEGSNVYTKDTVDDLDDKQGQGFMSADDLEEIDIGPGDRPRPTFISKNLSPEFRTKLIELLKEFRDCFA
WEYYEMPGLSRSIVEHRLPIKPGVRPHQQPPRRCKADMLEPVKAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKVRVC
IDFRDLNKATPKDEYPMPVADQLVDAASGNKILSFMDGNAGYNQIFMAEEDIHKTAFRCPGAIGLFEWVVMTFGLKSAGA
TYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRKYGLKMNPTKCAFGVSAGQFLGFLVHERGIEVT
QRSVNAIKKIQPPENKTELQEMIGKINFVRRFISNLSGRLEPFTPLLRLKADQQFTWGAEQQKALDNIKEYLSSPPVLIP
PQKGIPFRLYLSAGEKSIGSVLIQELEGKERVVFYLSRRLLDAETRYSPVEKLCLCLYFSCTRLRHYLLSNECTVICKAD
VVKYMLSAPILKGRVGKWIFSLTEFDLRYESPKAIKGQAIADFIVEHRDDSIGSVEIVPWTLFFDGSVCTHGCGIGLVII
SPRGACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADAIEIMGDSLLVISQLAGEYECKNDTLMVYNEKCQELMKEF
RLVTLKHVSREQNIEANDLAQGASGYKPMIKDVKVEIAAMTADDWRYDVHQYLHNPSQSASRKLRYKALKYTLLDDELYY
RTIDGVLLKCLSADQAKVAIGEVHEGICGTHQSAHKMKWLLRRAGYFWPTMLEDCFRYYKGCQDCQKFGAIQRAPASAMN
PIIKPWPFRGWGIDMIGMINPPSSKGHKFILVATDYFTKWVEAIPLKKVDSGDAIQFVQEHIIYRFGIPQTITTDQGSIF
VSDEFVQFADSMGIKLLNSSPYYAQANGQAEASNKSLIKLIKRKISDYPRQWHTRLAEALWSYRMACHGSIQVPPYKLVY
GHEAVLPWEVRIGSRRTELQNDLTADEYYNLMADEREDLVQSRLRALAKVTKDKERVARHYNKKVVPKDFSEGELVWKLI
LPIGTRDSKFGKWSPNWEGPFQIYKVVSKGAYMLQGLDGEVYGRALNGKYLKKYYPSVWVNA
>Boudicca_gag#LTR/Gypsy 236-1069 [Schistosoma mansoni]
MTEHSPKVFKLKSIPPISIQLTPFWPDNIESWFCYAEADFCMHGITDSRTRFLAVVKALPREFNRYVTPSMFTSDVSEPY
ESLKLSILKRGDLTDRQRLDQLLNNIDLQHGSATDMLLRMREVIGQRTFDDGLFRQLFLSKLPQQVQAVLVSFQNNAIDE
LAASADRILEITKFSKAEVFTIKEKPQSTSTDMAELCHTLTRCLRVRNDRSRSKTPRRSASRKRSGSRPRETDNPDWCWY
HNQYGKFSRNCRKPCNYPTPKSSDTKNSSGNFPAGTR
>CINFUL2_ZM_gagpol#LTR/Gypsy 43-3987 via tfasty with RETROSOR1_SB, 8 stopcodons. [Zea mays]
MASQSNQVVASLATKLVFPITGGSSSEPANKKQKKEAHRRVHHVGVQGPFIKSKxSHIPITFSQEDLQLKDYPHNDAMVI
YCIIKGFLVHNVLVDTCSATDNIFAKAFRQMQELDDKIHDATHPLCGFGGRxIVALGKITMPVTFGYVNNTRTxQVVFDI
VDIEYPYNAIIGRGTLNAFEAILHPAYPCMKIPSEQGPIAVHGSQEAVRRAEGSWMDSKAIHNIDEVEAYQxYKHKREKV
ASVDQPKPMLLCGDIAEQKVLLGSQLSDEQEKTLLRFLFNNKDVFAWTANDLCGVNRDIIEHSLNVDSSFRPRKQRLQRM
SDDKAEGPRNEVKRLLSADVIREVTYLEWLANTVMVKKANGKWRMCINFTDLNKACPKDEFPLPRIDSLVDAAATSKLMS
LLDxYSGYHQIWMKKDDEPKTSFITPSGTYCYLxMPEGLKNAGGSFSRMTAKVLHSQIGKNMLTYVDDIIVKSTKQENHV
ADLQETFANFRQAGLKLNPEKCVFGVKNDKFLGCLVSTKGIEANLSKIEAILRIEPPNSKRGAQRLAGRLVSLNRFISRS
TERNLPFFEILKSAEVFQWGPTQQKAFEEMKQYLIDITTLTPPSSGTPLLLYVVVSHTAVSAALVQEKQDGHIKKQAPIY
FVSEVLSPSKKNYTxLEKVLYVVLMASRKLRHYFQTYHIIVPSSQPLKDIMRNREATGRVEKWAAELNEFTIDYVHRSSI
QSQALSDFIVDxTLGAQDEDRINDIEAWMVFCDGSWGTFGAGATVVLVAPSKVRTRYAVQLDFSCTNNIVEYEALLLGLR
KLKAMSIRRAVFKTDSQVISGHVDKSSKARDPKLEKYLDAVRRLEASFEGFFVKNIPRGENEHADLLAKSVAQGLPLPSE
VFFEIIKAPSVELMERAVLTISLVHSEDWRTEIVSFLQGNCLSDDEGYNNRMDAWTRPYVIIEGELYKHGVCSPLLKCLS
RTEGQELLKEIHAGLCGAHIGSRPLLGKVFRQGFYWAKAASDVAELVQKCENCQRCARDQKQPSSLTQLIQPTWPLQRWG
LDLLGPLPPAQGNLKYVVVAVEYFSKWIEAKSLATITSATVQKFFWQNIVCRFSVPKAITVDNGTQFDVETFKAFCSQIG
TKIHFASASHLESNGLVERANGIVITGIMKSIFNQPKGKWPDELIKVVSNHNTAVSRSMGFTPFKLLFGDETITPEEERT
SSIRTLASTEDEGDCQVTKDTIEETRLQVIEHINKYQAETVKWRDRKVRLKNTKPGHLVLRRVANPDIVGKLHLKWEGAF
LVVSSSRPGSYRLKDMDGNDIPRSWNADELRRYYV
>CER2_CE_orf3#LTR/Gypsy 7242-8339 matches Gypsy2_CB product [Caenorhabditis elegans]
TSSVLAARHLRGQGMLNEDLINPTLSAAVKLPYTSIPKEMTILRVFMNIHDPQLVIGTAAAIKLAFSQAPFLEIKDRFDI
TFIDEASQLALYVLGSLATMLPKSRMILVGDMHQLPPYMEEALPAELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPKMI
TEVLGDLFYGNTLTSSKPGVTDIPVLKAMGLPSRHPMVFVNYTSPQTAVGKSFSNEGEARYALQLVEALTRYASTANKKI
TAAILNFYGAQYSYVYSMAEDEVTVNTIDGCQGQEYDVTIVLLTRSDPYERSKFLVNANRINVALSRPKIATVIIGQRHL
TGNQPDPRQPKRGRHQRVCNWARLIEKLPKECFVDAKDQVIAQVE
>Atlantys_OS_gag#LTR/Gypsy 434-3697 [Oryza sativa]
MEFKVRVHGVQGDGAQGLQGGNLNQNSDAAQDFFNNFQDRVDYAVHHALINQSGVLVNTLSNMMKSIADGSIAEHQAAGP
VYLQGGVFPNYRPLITDVQPSIQAVPPVAPSAQPTAPASTPLPAPSALAPGQLVNPRLLMREQPQHSGQVVNRLTQDQVA
AMFLPPQPTVDPIQQQPIQQTPPIQQVVQPIQQQVVQPVQQTPPRQQPLQPIQQTPLRQQIVQPIQHQGSMSASAGFATP
GGQPVQQFLNQVVPEHLVHHVQPDGTVMPQVVPEHLVRNIQPNLHNYQGGNLNYQYQPPSPQAQYQPGGLAQPQFASQYG
QFEPMQQQSQGAAQQRPWADVIADVMREQFGLKPKETGSLYRQPYPEWFERVPLPNRFKVPDFSKFSGQDGVSTYEHISR
FLAQCGEASAVDALRVRLFRLSLSGSAFTWFSSLPYGSINSWADLEKQFHSYFYSGVHEMKLSDLTAIKQRHDEPVHEYI
QRFREMRNKCFSLSLTDAQLADLAFQGMIAPIREKFSSEDFDSLSHLIQKVTLHEHRSAEARKXSKKVNHVCPYMYGSDD
DEDDSEIAAAEWVRSKKVIPCQWVKSSGKEEKYDFDITKADKIFDLLLREKQIQLPAGHTIPSAEELGKKRYCKWHNSGS
HSTNDCKVFRQQIQVAIEGGKIKFDDSKKPMKVDGNPFPVNMVHTAGQTADRGRARGFQVNSAKIINKYQRKYDKQQEKH
YEEDDDGFDPHWGCEFFRFCWNEGMRLPSIEDCPGCSDIAESSSRSYNRGNRLRQTRVPVHQRLGPVNQDRGQEDNEIRK
TQWCPSGIFTKNQKRRVQRLRNRERFQEVEQEINHRLKKAKPRQEWRVKNQVPVADDVAADEAKRLAKGKSVVTAPVNMV
FTLPAEFGIDQADVDEVEEESAKLVLSPEQAVFEKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKL
GRNAEDLIKTNMVLKDFGGNPSETKGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQG
DKIEIVPADRSVNVASADLALWEMDGLDCLSGKVWDGDFLKVSDSDIQ
>Athila2_gag#LTR/Gypsy 146-2872 via tfasty with Athila6A, 3 frameshifts and 2 stopcodons. Trimmed 5 AA to first M. [Arabidopsis]
MPTRSTGNQNLLFNENIDRIARELRERRNTVNLVPQQPLEMADEQNQQNGPTNVGAGDAPRDHRQRKGIAPPAIQNNNFE
IKSGLISIIQGNKFHGLPMEDPLDHLDEFDRLCNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLSHDSITTWNDCKKA
FLSKFFSNARTARLRNEMSGFLQKAGESFCEAWERFKGYTNQCPHHGFTKASLNNTLYRGVLPHIIMLLDTACSGNFQNK
DVEEGxELVENLAQSDGNYNEDYDRTVRGTADSDDKHRKEIKAMNDKLDRILLSQQKHVHFLVDDEQFQVQDGEGNQLEE
VSYINNNQGGYKGYNNFKTNNPNLSYRSTNVANPQDHVYPPQQQQGQNKPFVLYNQGFVPKQQFQGNYQPQPPHGFAPQE
NQGPTAPDAEMKQMVQQLLQGQASSSMEIPKKLSELHHKLDCNYNDLNAKVEALNTKVRYLEGQSASTSVPKVTGLPGKS
IQNPKEYATAHAITICHDRELPTRPVLDLIIGESDVQEGEACTQIEVSVIEFNHSAGSHHLIQSTSEEKAAIIERMVKRF
KPTPLPSRALPWTFRKAWIERYKSVAAKQLDEIEAVMPLMEVLNLIPDHHKDVRNLILEKIKMYHDSDDESDATPSRVVD
KRIVQEKLEDPGSFTLPCSIGELAFSDFLCDLGASVSLMPLSMGRRLEFIHYKPCDLTLILADRSSRKPFGMLKDLPVMI
NGVEVPTDFVVLNMEVKHKDPLILGRPFLASVGAVIDIREGKISLNLGKHIKLQFDINKTPQGSTEDGKISRNVxSGEGY
ETERVKKLKKRSDTQEETIERLAHSVEELRSKLNQMQKEAQPKGGINTIPRKKFTSRWSEETDYPLEEKEAYFEERGIEY
SAVDLSREDAEYDDDIREDCADPLYHSFSS
>ATGP8_pol#LTR/Gypsy 1662-5052 via tfasty with ATGP1I, 2 stopcodons.  [Arabidopsis thaliana]
VLVFLSLRTCVGSVLVGGVKAYTMFNSGATHCFVSPELARCWDSTIExSEKRRKVETAGPGLVKSSRTYRDVPVEIEGVE
LFGNFLEMELKRYEIILGMGWLKRHNANLDCPRLRVNFTREEGNLMFQGVETRSGPIFSMIQADNLQWTGPEAYLATISI
DGGDTGMELKDILVAAEYSDIFEPLQGPPPDRGDAFIIELEPGTAPVSKTPYRLAPTEMAELKKQLEELTDKGFVRPSSS
LWGAPVLFVKKKDGTFRLCIDYRGLNKVTIKNKYPLPRIDELLDQLQGASWFSKIDLASGYHHIAISEADVSKTAFRTRY
GHYEFVVMPFGLTNAPAAFMKLMNNIFREFLDKFVIVFIDDILIYSRSKEEHVEHLRIVLQRLRDHQLFAKLSKCSFWQK
KIGFLGHVISEEGVAVDPEKITTITHWPRPKNATEIRSFLGLAGYYRKFVEGFASIAKPLTQLTCKDAKFEWTEACEESF
GKLKEHLTQTPILVLPKAGVPYAVYTDASGTGLGCVFAYASWQLRKHEINYPTHELELAAVVFALKVWRAYLYGEKVQVF
TDHKSLKYIFTQADLNLRQRRWTEFLADYDLDIAYHPGKANLVADALSRRRHDVHATKEVEELVSALTSLNICEALVDDE
VVGLKAVNQADLLxRIREAQKEDVVLKKSVESEVEGYHITKNGTFVFKGRVCVPDDKDLKEEILRQAHQSRFAIHPGSTK
MYRDLKRYYHWVKMKREVADWVAKCTTCQLVKAEHKSPSGLLQGLPLPEWKWDMVTMDFVTGLPRTASKQDAIWVIVDRL
TKSAHFLAVNKKDTADRLAQKYMDEIVRRHGVPVSIVSDRDSKFTSLFWKAFQKALGTKVHLSKAYHPQTDGQFERTIQT
LEDMLRACMLDWGGRWEKYLPLVEFAYNNSYHSSIGMPPFEALYGRPCRTPLCWTEVGERQDIKPEIIQESTEQVELLKN
RLREAHDRQKSYADKRRKGLEFKVGDLVYLKMRLFKGLNRWAKRGKLKSRYMGPYPIIERVGAVAYRLDLPADLAAFHDV
FHISVLRKVVTEPKLIISRPPEDLELDLSVKGKPVSIVSHRENGSRGKKVKSIQVCWERDGIQELSWESERMMREDYPEL
FKDEEEDHGDGSNSRTNSIVVGE
>ATHILA-3_SBi_env#LTR/Gypsy 3197-4750 [Sorghum bicolor]
MFKKVKNAGKALKNIGTRSSXRHSSQPSEMSVDPTPTQAPSSSSGQQVKVLLKIGDLGLKTRREKEVYQQLKNKDFIHTP
TIDPILLRETGMDTEFDLIFQMMGWTNFWNITELGSRLLTLEFLCTLQYYEGGIVFRMFKQEIMLSWRELSDHLGFSSRC
ILNIDSDLPNFERHQFWREISRDNFYSQARTSDMEHPTLRMFHKWLGYNLFYRDDIRKVRVGDLQLLYAAISKVPTSPVT
LLVSHWLSIPSLQGPVGCTSLITRLATNLHLLENSSLDFIEELRIYHGYDTFRQARMLKKEGNIMYMLYDDKGKIRLPNP
NLGLYAVQNFLIEIAATPVNQRTPQRVASERITTHRERTWYGADPGPEEAAHLHYCDYNPRVLRDPWARHAQPQEPTEET
WPESQDHQWTNPPFHTGRYSTDPYGASGSRPPPQFDAGRYSDASYAFTNDYYQEAGAFFTRTDNTLLDIQNTQAEHGRLL
EEQQKWNQDHAAAVEELRQDTTTMNDNITTMMRFWNIG
>Atlantys_LC_pol#LTR/Gypsy 3697-7317  [Lotus corniculatus]
MKKRMPXLSGKMXLKMINSSLARISAYAAENRIRTALEAARIAKEMATDEANASILPVEMTSQEEAXXXKDNTCIXXNEQ
SVDECEFEDLCNLRLDCIYDDGPLGFEKPVVDMSKKMEAQDPLEEVDLGDGXEKRPTYISALIDPELKDXMVKLLKEFKD
CFAWDYDEMPGLSRELVELKLPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGKM
RVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKN
AGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDHLSHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGI
EINKNKAKAILDTSPPTSKKQLQSLLGKINFLRRFITNLSEKTKSFSPLLRLKKEDVFRWEAEHQKAFDELKKYLSNPPV
MVPPIKGRPMKLYISATDETIGSMLAQEDEDGNERAIFYLSRVLNSAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVF
SHYDIIKHMLSKPILHSRIGKWALALTEYSLTYTPLKAIKGQAVADFLADHTMPREIITYVGIQPWKLYFDGSSHKNGTG
IGMFIMSPQGIPTKFKFRIKSNCSNNEVEYEALISGLEILLALGAKNVVVKGDSELVVKQLTKEYKCVSEHLAKYYVKAS
NLLAKFDEAGIGHVPRIENQEANELAQIASGYMIDRLKLTELIKIKEKLSPSDLDIMVIDNLTPDDWRKPIVEYLQNPVG
STDRKVKYRALSYTILGNELFKKNVDGTLLKCLSEDDAFIAVSAAHDGLCGAHQAGAKMKWILFRQGLYWPTIMKNCIEY
AKGCQDCQKHSGIQHVPASELHSIIKPWPFRGWAIDLIGEIHPASSKQHKYIIVAVDYFTKWVEAIPLQNVTQETVIEFI
QNHIVYRFGLPESITTDQGTVFVGRKVAAFAESWGIKLLTSTPYYAQANGQVEAANKVLISLIKKHVGRKPKSWHESLSQ
VLWAYRNSPREATGTTPFRLAYGQEAVLPAEVYLQSCRIQRQEEIPSDVYWNMMLDEMVNLDEERLLALDVLTRQKDRIA
KAYNKKVRDRSFITGDYVWKVILPMDKKDRVYGKWTPSWEGPFTVEKTLPNNAYVIKELGNQSQCVTINGKYLKAYKPML
HECKIE
>Atlantys1_p2#LTR/Gypsy #ReverseORF 7 exons: 10596-10576, 10483-10337, 10096-9385, 9271-9035, 8928-8204, 8130-7981, 7906-7259 (1 intron annotated in repbase removed, as its translation matches p2s elsewhere) [Arabidopsis]
MSGHIGQIPLTERFRGDTRDKSLLMWTAEMERLFSAPHLTVQIRRGEEISAISKIVMSDFEDSQNKSNHSYGDDSSSSET
RSAASPPRVQRRVITLGGMGPIRPPSTRADKPKKKKAAKQGGGTPMTNSDLVDLRRRCQVPVGVTMILPRPPLHPENVPV
GWCCAYANFFEKCGLFFPIPACILEMLYCLGLAFPQMCPNFVRHVLALFTRAREVNREFSCHDLLQLCQVKTNARSDQGT
YYISARPGSLVLGGLKACRDTNWRSKYFFFRVDRHSIGSFDPARITRTWSTNLARTKEVTLSETELELLTLLRRGQTDWA
TFSRDRIVAALAVAPAVPVAPAVPAIVLPAAQLDPIEEVPRIEPIPEADLPIVPPDSSSTSELPLIRRMRRPSLRVQRAN
AGAPARAGDLSAAVTAARNTLAVSSASASASHPSLPEINTGTSAAAGQSDNNQVAQVSGPSAVVRSDGAPSSPKRARTQP
EVHPAAELVVSDQGVASPREERMEPAAAIPEAAASADRRSSGRSHGGGRGSRGGGRSSNRSQEVRQTSNSGGGSAGSRPF
HWSYTHDRDHPIVEDEAGLANLLRHIKGRNCQVPGVKNMAEAAAYADMMAKEGQAIAATNKLVALYEQRLSQVPSASELE
EGKTLIRELTSSVKAGQDREVSFQAEIERLKMELSTSKDLEKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELS
KKVMDLTSTAQGAKKAVHDAKVELAAAYSKLLAGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQ
AELDDLEARCKSKEVSDFTLSKLDLPQVSEISVVRPMDVDEQGTPIGLDEFGSNKDAFPGGLAEGSGTVFATPAGESRE
>CINFUL2A_p3#LTR/Gypsy 6987-5894 (1 intron) with GenScan (Arabidopsis setting) [Zea mays]
MARVRSTARVEREGDETEASETVPISEVMQRSGLVTSEKIPSEDAEQAIAEAEEEDIEETDPEDDYRIAMPSKPSHLDFG
KSTVSKADLSKMVKSGFFTENQKKLLRFGGEETTPKPEKDEIVIFKSFLKAGLRFPLHGIIAETYCLYLSDEETPASPSV
ADLEEILKVMTESLPAKLSPLRPRLTKFFQKDKEPEKSKKVIKAKRQRIITVTEVIDKTPPRASAQKTPAAAEGTDIEIV
PSEVAAAAAEDLNLESTIAHIDKILLDMAAEEATTAAEEAATAASEKGKEIADEASENEAFIFQNLVGEKLSKAEREELR
EYAKSADTNLEHSSSEALMTKN
>GYPOT1#LTR/Gypsy 223-5098 via tfasty with RETROSAT2_gagpol, 1 frameshift [Populus trichocarpa]
MPRNRRIADTVRVEDDQDDVPIGRLRTARQRRRRGAPVPQHVEEVPPPVEEEPQEIEEEDIVNETGVGVADPEPVTEFQQ
LSQVVRTWIEFSMERDRRRDRDVPSTSHTVQGVNVPLNDFMKLAPPIFTGMDSSEDPQRFLDDIWRRCEALGCTDHRAVS
LASFRLEGDVAISWFESRKRARPVEAQWTWKEFSSMFLDRFLPQSVRDARLYEFERLSQGSMTVDEYDLKFTQLSRYAEH
LLPTEEWRVKRFIRGLKSSMYKVMVSQVFPSYSLAVDSARLIEARELEDMTAGQSKRPREEGQSFRQQGLSAGLSRGRSG
RQGSWVQRGFRQRPSVSGSGGQSGSSGTQSLVQTAPRSSFITPSDSSSCQHCGGSHTSAECYRRTGACFSCGQMGHKIRE
CPRRQLSASGLSASVQHPIQAPSTSQSVAHGSRGFGGRGQRGRGAGDRGQIQQGQGHARVFALTQQDAQASNTVVSGILP
VCSFEAKVLFDTGATHSFVSSYFAMRLDRQPTLLKSPISVSTPLDELILVKYVYLDCEIEIGDKIFMEDLNVLDMVDFDV
ILGMDWLAKHRASVNYWGKKIIFDLDEEVGLVFQGDKIGSPSIMLSAISRKMARKGVQCYLAYIVDVEKEVPQLDQVPIV
REFIDVFPDDLPGLPPYREIEFCIDLVPGTEPISMAPYRMAPAELRELKEQLQDLLDKKFIRPSVSPWGAPVLFVKKKDR
SLRLCIDYRQLNRVTVRNRYPLPRIDDLFDQLQGAQFFSKIDLRSGYHQLRIRETDILKTAFRTRYGHYEFLVMSFGLTN
APAAFMDLMNSVWLFIDRFVIVFIDDILVYSRSREEHEQHLRMVLQTLREHQLYGKFSKSEFWLESVAFLGHVVSRNGIE
VDPQKIEAVKQWLRPTSATEIRSFLGLAGYYRRFVENFSRISAPLTKLTQKNVKFQWSEACEKSFLELKERLTTAPVLAV
PSGSGGYTVYCDTSRVGLGCVLMQHGKVIAYASRQLKKHEQNYPTHDLEMAAVIFALKIWRHYLYGETCEIFTDHKSLKY
IFQQRDLNLRQRRWMELLKDYDCTIHYHPGKANVVADALSRKSSGSLAHIQEVRRPLIRELHELVDEGVRFDLSEAGAMI
AYFQVKSDLFDKIKAAQKKDDSLLRIRNEVEQGKAAGFVIGDDDVLRYKDRLCVPDVDDLRRELMVEAHQTVYTMHPGST
KMYKDLKVCYWWNRMKVDVADFVSRCLTCQRVKGEHQKPPGLLQPLLIPEWKWERITMDFVTGLPRSQEGYDSIWVIVDR
LTKSAHFLPVKITYGYAKLAELFISEIVRLHGVPISIVSDRGPQFTSRFWVKFQEAMGTKVQLSTAFHPQTDGQSERTIQ
ILEDMLRACVMDFGVGWSKFLPLVEFAYNNSYQASIEMAPYEALYGRKCRSPVCWFEVGEKRLMGPEFIQITSEKIEVIR
QKLQTTQSRQKSYADKKRRDLEFSVGDCVFLKVSPTKGVFRFRKKGKLSPRFIGPYEILERVGAVAYRLALPPNLSAIHP
VFHVSMLRKYMSDPSHVLEVYPIELRDDMVYEVQPEAIVDRQVRKLRSKDIASVKVKWKGHSREEATWELEDKMREEYPH
LFDNLGKYSIFSLKFRGRNFYKVGR
>Gyp2_Cis_pol#LTR/Gypsy 645-3827 [Ciona savignyi]
FRKQSASMSPSLCVSGKLQSRPSIAAATAGTERSLFYVWDRLSGRNLLVDTGAEISVLPPTGLERRTNKPGKNLLAANGS
NIRTYGSRLESLDLPPGKFNWKFVLADVSRPLLGADFLRANALLVDIKRRRLINTETFASTPIGTTCQSAPRLNAVSSGK
SVYAQLLAEFPAVTTPHFSQSTLPKHGVEHHIITSGPPVHSRARRLHPEKLAVAKDEFRNMLNMGIIRRSSSPWASPLHM
VPKSSGEWRPCGDYRRLNAATQPDRYAIPHIQDFSARLAGSCIFSKIDLIRGYHQVPIAPEDIPKTSVITPFGCYEFVRM
PFGLKNAAQTFQRLMDTVCQSLDFVYVYLDDILVASKSTSEHLDHLRQLFQQLADHDLVVNVGKCQFGVSQIDFLGHRVN
QQGARPLPEKVAAIQLFPRPTTIKELQQFAGMINFYHRFIPCAARIMSPIYESLSGKPKKLVWNEALVSAFEEAKTALAN
ATLLHHPLHQAPTGLTTDASQHAIGAVLQQFMDGAWRPLAFFSKRLRPPELKYSAFDRELLALHLAIRHFRYFLEGRSFT
AYTDHKPLTFAFFKTSSPWSARQQRQLAAISEYTTDVRHIDGKRNQAADALSRISINATQLQLDMDYASLAAAQLDPEVQ
AYRTALTNLKLKDIQLDSSGTTILCDVSTGTPRPVIPKSWQKKIFDIVHNLSHPSIRATRKLISSKFVWHGLHRQVGLWA
KQCVSCQKAKIHQHVRAPLEQYPLCQSRFSHVNIDIVGPLAPSQGNIYLLTMVDRFTRWPEAIPMTDATTTTCARAFAFN
WISRFGVPSNISSDRGPQFTSALWSTFTRLLGIQLHRTTSFHAQGNGLVERFHRHMKSALMARLTGPNWVDELPWVLLGI
RTAPKEDLKASSAELVYGANLVVPGDFFGVSQADPLPSQILPAVKETVGRLLPTPMSRHGLVPTRVPPVLDTCLYVFLRN
DKHRPPLTPPYNGPYRVLSRSHKTFTLEIGERHEVVSIDRVKPAYLDMTEPVTVAQPPRRGRPRKADNDNLPPQNTPQRE
SPAMCTRSGRLVKPPIRFID
>GypsI_pol#LTR/Gypsy 5429-9100  [Oryza sativa]
MKAEPRMARLLEKAGINLQRNNRLPPPPAVCEDWWAQAEEFIKRRCKEQPKYGLGYINVDEPDDEDEVFEDDIFHCCTIS
TTTRGDALLQQHPFEVAAVGVEEELDVAGALKQLDDGGQPTIDELVEMNLGTEDDPRPIFVSGMLTEEEREDYRSFLMEF
RDCFAWTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRLINVGFIKEIQYPRWLANIVPVEKKNG
QVRVCVDFRDLNRACPKDDFPLPITEMVVDSTTGYGALSGYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQ
RAMQFVLDDLIHHSVECYVDDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFVIRHRGIEIEPKK
IKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGTPFVWDEECQNGFDSIKRYLLNPPVLAAPVKGR
PLILYIATQPASIGALLAQHNDEGKEVACYYLSRTMVGAEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRY
VLSQPVLTGRLGKWALLMMEYDITFVPQKAIKGQALAEFLATHPMPDDSPLIANLPDEEIFTAELQEQWELYFDGASRKD
INPDGTPRRRAGAGLVFKTPQGGVIYHSFSLLKEECSNNEAEYEALIFGLLLALSMEVRSLRAHGDSRLIIRQINNIYEV
RKPELVPYYTVARRLMDKFEHIEVIHVPRSKNAPADALAKLAAALVFQGDNPAQIVVEERWLLPAVLELIPEEVNIIITN
SAEEEDWRQPFLDYFKHGSLPEDPVERRQLQRRLPSYIYKAGVLYKRSYGQEVLLRCVDRSEANRVLQEVHHGVCGGHQS
GPKMYHSIRLVGYYWPGIMADCLKTAKTCHGCQIHDNFKHQPPAPLHPTVPSWPFDAWGIDVIGLINPPSSRGHRFILTA
TDYFSKWAEAVPLREVKSSDVINFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEKYKIKWNYSTGYYPQANGMAEAF
NKTLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVYGNEAVLPLEIQLPSLRVAIHDELTKDEQIRLRF
QELDAVEEERLGALQNLELYRQNMVRAYDKLVKQRVFRKGELVLVLRRPIVVTHKMKGKFEPKWEGPYVIEQAYDGGAYQ
LIDHQGSQPMPPINGRFLKKYFV
>Gypsy2_Dya#LTR/Gypsy 971-4904 via tfasty with Gypsy35_AG, 3 frameshifts and 3 stopcodons. [Drosophila yakuba]
LKAKLTELGLDTNGRKSALQDRLFERYGIDAGGEEEDAVSVSGSSNYQDVSHHVGSRFTLRDVQDSISSFSGSDHEDVNH
WLSEFEDVAVTVGWDNLQRFIYAKQLLTGAAKLYIKSTNRIRGWVELQRALKDEFGKKLCSAEIHKLLRQRQKQPKETCI
EFLYNMMEISKSINLDEESLVSYVVEGIPDGRINKAGLYRAKTIRELKDEISIYEKIKGKGINKEIVKKEVAVKKGQSNG
QRKCFKCNSEGHIARDCKGDVVCYHCNQKGHISKNCVEKKNNVVVKNEKANVLEVNVEKGSNKKMIVANGLTFVAMIDSG
CDLCLMREDIFRSFEDLRLKPEAKHLRGIGKGELRTIGCFDINLQADGVCFTSTFHVVKQNELEYAAIIGNDVLQCIDVV
FSSMGVLFKEKEKDFATAFKGMRVTEIIDESSVLDKIDLSHLEKSQKLKVENLVKDYKPVKSLASPVNMKIILEDDVPVY
QRPRRTSYENKCFIDKQVQDWLSEGIIVPSCSEYASPVVLVSKKDGSKRFCCDYQKLNQKIKKDNFPMSLIDDVLDRLQG
SKILTTLDMMNGFFHVPIDEDSRKFTAFVTHNGQYEFTHVPFGISNSPAVFCRYVSEVLRELIQNQTIVVYMDDIIVPSK
DENDGIKALxIVLSAASKAGLRIKWEKAQILKRRINFLGYTIENGTISPTDEKIKAVVNFPIPQSRQALQRYLGLTSYMR
RFIEDYALAAKPLSDMLRKEGNQKNDRNLVMTELGIASFNHLKQLLVSAPVLKLFDPLAVTEVHTDASKYGFGGVLMQKD
PDDQQFHPIEFMSRKTNNCEEKYSSYELEVLAIVNALKKWRVYLLGKPFTVVTDCNAFAMTIKKDDLPPRVARWAMSLQE
FEYKVEHRAGTKMRHVDALNRLSCFLIADSTKSRLIGAQNRENWIKAVKVILASNKEHEDFYIKNNIFCKDPVNELIVVP
DSMVDEIIATAHKEGHFGIKKTRDILEKSYYIPGILPKVERVVRACVECLIIDSKRGKKEGLLSPIDKAQEPLGTxHIDH
VGPLTDTKKKYNHILAVVDGFSKFVWLYPTKSTGTNEVIEKLEKQAAVFGNPRRIVTDRGTALTSGSFTEYCNRESIQLL
HIATGIPRGNGQVERIHKIVIPMLGKMCQENPLNWYRHVDRVQQIINNTPPRTTKYSPFRILTGLNMRLKLNDIKDLIVD
LELEELNDEREEIRKKAQENIEKVxQENRKNFNEKRKVENEYEEGDLVAIEKTQYGTGMKLRPKFFGPYKITKIKLNHGR
YEVIKEGNQEGPKTTTTAAEYIKKWSSFRGE
>GypsO_gagpol#LTR/Gypsy 141-4586  [Oryza sativa]
MEQPLFELSAPRGEFYEPPPSSEPIYTTGYEIRPELISMVRENPFSGFDLENPYHHLRDFEQVCSCLKIRGMRQETVRWK
LFPFSLQERAKQWYTSTVGCVNGSWEKLRDRFCLAFFPVTRITALRVEILSFKQIENESIGAAWSRFTNLVQSGPTLSLP
EYVLLQHFHTGLDKESAFYLDITAGGSFMHKTPSEGKTILDRILENTSFMTQSNEPQPEASVSKIEEPLTIEPLAEPSTS
ASSIDEKVPEQPSVENEEIQTPDCAAIMFRDGFDEDYGNTLNYFSKRKPPVPLSPPDPMELGFLRETVRELTSIMSDEWL
REAELSSEVIRINTAPRIIPCHLEGNDVGILYSPTVGANLVSESFAFAYLSDKAVTPTNKFFKHPNGNIIEGFGIVQDVP
VCFEDREAILDFHVFEIQDFDILIGLPIEQLLINTPRLGSLKITLGENEFSIPFSRARITLTDPLPEIESAEEVTAVPPH
ESPEALLEDEVPDFIKEEADPGETLDLPIMEPPPRPPLELKPLPPGLRYAFLHNDREAPVIISDKLSEDETQRLLTVLEK
HRSVLGYSLQDLRGINPALCTHRIPIDPESTPSREPQRRLNNAMREVVKKEVLKLLHAGIIYPVPYSEWVSPVQVVPKKG
GMTVVANAQNELIPQRTVTGWRMCIDYRKLNKATKKDHFPLPFIDEMLERLANHSFFCFLDGYSGYHQIPIHPEDQSKTT
FTCPYGTYAYRRMSFGLCNAPASFQRCMMSIFSDMIEDIMEVFMDDFSVYGKTFGHCLQNLDKVLQRCQEKDLVLNWEKC
HFMVREGIVLGHRVSERGIEVDRAKIDVIDQLPPPVNIKGIRSFLGHAGFYRRFIKDFSTIARPLTNLLAKDAPFEFDDA
CLKSFEILKKALVSAPIIQPPDWTLPFEIMCDASDFAVGAVLGQTKDKKHHAICYASKTLTGAQLNYATTEKELLAVVFA
IDKFRSYLVGAKVIIYTDHAALKYLLTKKDAKPRLLRWILLLQEFDLEIKDKKGVENSVADHLSRLQITNMQEQPINDFL
RDDMLMTVRDSNPWYANIVNYMVSKYIPPGENQRKLKYESRRHIWDEPYLYRVCSDGLLRRCVPTDEGLKIIERCHASPY
GGHYGAFRTQAKIWQSGFFWPTMYEDSKEFVRRCTSCQRQGGITARDAMPLTYNLQVEIFDVWGIDFMGPFPKSRNCEYI
LVAVDYVSKWVEAMPCSAADARHAKKMFTEIIFPRFGTPRMVISDGGSHFIDKTFRDLLREMGAKHNVATPYHPQTSGQA
ETSNKQIKNILQKTVNKMGTGWKDRLPDALWAYRTAYKTPIGMSPYQIVYGKSCRLPVELEHRAYWAIRNWNMDFEGAGE
WRKMQIAELEEWREKAYHNAKIYKERTKRWHDKRIKIKKFKPGDKVLMFNSRVKLFGHGKLRSKWEGPFDVIDTSSHGAI
TLRDDSGNIFKVNGQRLKIFLEPNETLDEEVDVIELIDYEP
>Gyp1_Cis_pol#LTR/Gypsy 1470-4757 [Ciona savignyi]
SYRFQGGPSKRSKKLPGKTLDMAYSVLCSTSKSPSLLFITDLTTTTKYLIDTGASLSLIPPIRDDRTRRNIGRDLIASNG
SALATYGERFVKLDFGHDEKYPWIFTIAEVELPILGADFLEHFNLTVDLKARIVSNARTNKRIKGENSGINTSISANFVS
PIAGNGYEAILQEFSDVTKPKQKIPEVKHKVTHKIITKGNPVFCRPRRLSPEMSKIAKDEFMHMLELGIVRRSDSNWASP
LLMVPKKDHTWRLCGDYRRLNAITVPDRYPIPHIHDFVNSLHGVQIFSKIDLMKAYYHIPVDPEDIHKTAISTPFGAFEF
LKMPFGLRCAANSFQRFMDDILRGLDFCYCYLDDVLIASSSEQEHKEHLRIFFQRLRDNGVVVNPAKCEFGVTTMNFLGH
RITTDGIEPLEEKIQVIKDFPQPSTMKQLRRFLGMVNFYFRFIPNCAEIAKPLNQLLTPKKNGKFAIPWDKDQXEAFNRM
KIKLARAAMLTFPAPNAQTALVVDASMIAAGGVLQQRIDDAWQPLAFFSKAFDVRQVKYSAFDRELLAAYLAVKHFRYFL
EGREFXIMTDHKPLLSAFHTPRENATGRQARHLAYVSEYTSDIQYLPGTRNIVADALSRIEVNSIFQAKDLFNYREMAAA
QKNDASIETLKQSKKSSLKLANRRLDGYDVSLLCDISTGKPRPVVPVSLQKKVFQKIHSLSHPGIRSTTKLIRERFVWTS
MNTDIRNWCRLCEACQRSKIIRHNQAPLARFKLPVARFYHVHLDIVGPLPPSSGYTYLLTCVDRFTRWPEVICLTDIKAE
TISNAFLLHWVSRFGTPGIITTDRGKNFTSNLFHKLAEFLGAKLQHTCAYRPCANGQVERLHRQLKTSLKAQESPQDWYA
NLGLVLLGIRNSIKEDIGYSSAELVYGTSLRLPGEFVDTDNLENDLDSHEYVSRFKTFMRNLKAXPPRIPGPRAVYLDDK
LQSCSHVYVRHDAVRRPLQRPYDGPFKVLKRDAKFFTLDYNGIPNTVTVDRLKAANVLIPVSESTDSNPISPSLEVEISP
SEIINPDFDIYTDISDHADYHESDLDRTIAPADEPRTTRFGRTIFRPRHLQDYDL
>CRMA1#LTR/Gypsy 1395-6073 via tfasty with CRM, 1 frameshift and 2 stopcodons.  [Oryza sativa]
MSGNEGEKSPQDFADCVSQEQLRTLQQNTQKDITEAVAKSVQDAFTKIGFLNHMERLDKRISTLTDRVAALETPSNEEVV
SGDDDAHPEDTVYDSSGYIDAPATRQARLxRRLRTNRTGMGGTRHQQGSNNNRVADDSYAKVKFKIPSFSRYYDAEKYLD
WEMTVEQKFNAHLIPEQHRVRQASSEFKDFAIMWWTGLSDEGVLPTTWEELKVAMRDRFVPPSYYRDLRKKLMRLEQGDK
SIQDYYGELQKGVRRCGIVEGVEDAICRFYSGLREEIQNIVDYKEFNSVNQLFRFAMLAEKELQGRDHQGKSKASTYTPR
TTPSAGLPKAVSFRTSSQPAGKRPAASGASAAPKPSPPPRPAESGKGSSQVPAKSASSVALTGCIQCHRCQGFGHVQKDC
PSQRAYVATEDGYITTSDVEEEEEEEEVEDEDGEVFGRDDTTDYRTIIVQRVLSTQVQQYDRLQRHNLFQIFFVINNRRA
LVIIDGGSCNNLVSSDLVKKLGLTTRTHPHPYHIQWLNDSGRAKVTQVCRVSFSIGSYADSVDCNVVPMQACSLLLGRPW
EHDNDATHHGRSNKYTFVHNGKKITLLPLTPPEIIEADKERAASLKLDESENQQVAKSVFPPKKDKLSPSSKVEGIKLKG
GVMLATKCDIADISNDDMCYFLICKQALVSLDDIASSIPPVVTNLLQEYEDVFPAEIPPGLPPMRGIEHQIDLIPGASLP
NRAAYRTNPDETKEIQRQVQDLLDRGYVRQSLSPYAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPILRLDDMLDELC
GSIIFTKIDLRSGYHQIRIKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGxFVVVYFDDILIYSK
SLDEHMDHLRAVFNALRDARLFANLEKCIFCTERVSFLGYVVTPQGIEVDESKIEAIRSWPVPQTITQVRSFLGLAGFYR
RFVKDFSTFAAPLNELTKKGVVFHWGKTHEKSFDTLKDKLTHAPLLQLPNFGKTFELECDASGVGIGGVLMQDGKPVAYF
SEKLHGPVLNYSTYDKELYALVRSLETWRHYLWPKEFVIHSDHESLKYLRSQNNLNRRHAKWVEFIESFPYVIKHKKGKD
NVIAGALSRRYTFLSQLDCRIFGLESIKKQYALDPDFNDVMINCKEERTWNKFVINGRFVYRANRLCIPVGSVRLLLIQE
AHGGGLMGHFGAKKTEDVLAMHFFWSRMRKDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSIPWADISMDFVLGLPRTK
RGRDSIFVVVDHFSKMAHFIPCHKSDDAVHIADLFFHEIVRLHGMPSTIVSDRDAKFLSHFWRTLWNKLGTKLLFSTTCH
PQTDGQTEVVNRTLGTMLRAILKKNLKIWEECLPHVEFAYNRATHSTTKVSPFQVVYGFSPRAPIDILPLPTSERVHNDA
KARAEFILKMHESTKFNIEKMTEKYRIAGSKGKQEVKLEPGDLVWLHLRKDRFPELRKSKLMPRADGPFKIVEKINDNAY
KLELPPKFGVSPTFNISDLKPYLGEEDELESRTTSIQEGE
>CIRCE_gag#LTR/Gypsy 5411-6356 oddly enough (far) 3' of pol [Drosophila fruit fly genus]
SLDLTAMRSNENLVDLDTDASVTCTICNGPVRNLDLVETRCKHSFHNHCLDNYLKNHDKCPICSQPCSQSELGSHLPLST
KSQGNRMMTRSGSRNTAKQHEKSDPNSQQEICSGDSSDSRVVTEDRVQQIVQSSMQAFQASMLQSVTEQITMAFTQLNKS
TFVNNGQSELQQDIQNNFGRDAPEISSERNNNSHVRTSPDFRSDRRDLSLDRPDRISNIMSNWRIKFSGSANDIAIEDFI
YRVNCLTSQSLNGNFELLSHFANLLFAGPALAFYWRVHRSVDNMNWNVLCSRLKERYQDQRSDREIKIAMRRRKE
>DM176_env#LTR/Gypsy 5027-6397 [Drosophila fruit fly genus]
MLITTVHGQQIEINNIDTNHGYLLFSDKPVQIPSSFEHHCLRINLTEIDTIADYFEQRLRTDYHAPQVKFLYNKMRRELA
GIALRHRNKRGLINIVGSVFKYLFGTLDENDRVDIQRKLETNAHNSVNLHELNDAIQLINDGMQKIQNYENNSNIINSLL
YELMQFTEYIEDVEMGMQLSRLGLFNPKLLNYDKLENVNSQNILNIKTSTWINYNDNQLLIISHIPINFSLINTVKIIPY
PDSNGYQLEYTDTQSYFERENKVYNNENKEINNECVTNIIKHLKPICNFESIHTDEIIKYIEPNTIVTWNLTQTSLKQNC
QNSFNNIKIKGNKMIKVTQCKIEINSIILSENLFKPEIDLTPLYTPLNITKIKTVKHNDINEMISQNNITLYIFMTTVII
ILILLYLYLRYVSFNPFMMLYAKLKLRKNQNQNTAQQIEMEDVPLPLLYPSIPAQV
>GYARLI1_gag#LTR/Gypsy 81-836 [Yarrowia lipolytica]
MTGLAEEWWFDSGRAALGADARDWKKFTQALESRFTPSTYAMNMEEDWSNLQCGPNESSYSYETRFRAARHHLSREAAPE
EAWLRLTSGMKDMWRREIMKQGPILQNNVEETLRHMHIVAGAEYFPGAHAQTPAAAPVATPTSTSQYGPGPMEVDNAVLL
KAMMESQEASQKRMMEQQTHMVELMANAIGRANNNGSQNGRNNRGGRGNYYNQRTSRECYTCGKIGHLARDCRHRERVQE
LIQQDQGNVRQQ
>GTWIN_env#LTR/Gypsy 4950-6419 (one stopcodon) [Drosophila fruit fly genus]
ICRGLNLRLVCRFALVTLIILAVANARITDFSHAKYIPVVDGDVLVFEHRNCLRHSSNLSDYIYMVDETKKLSASFPQSH
MRKLLDVDTDHLVNLLSVLKIHHRIARSLDFLGTALKVVAGTPDASDFLKIKMTEAQLVDSNSRQININSETQIQINKLT
DTVNRIIKARNNDLVDTPHLYEALLARNRMLATEIQNLILTITLAKANIVNPTILNHADLSSLIxQNTPIVSLLEASKIR
VLQSDSIIHILIAYPRVKVKCKKVLVYPVSHYQTILRLDEDTLAECEEDTFSVTECVETTHDTFCERSRRDTCARSLHAG
NTAQCHTQSNHLRAVMPIDDGIVIINEATARVSTDGGPEVLVKGTHLITFEQSATINGTEFVNLRKAINKQPGVARSPLL
NIVGHDPELSMPLLHRMNNDNLRFIQGFKDEVDAAGSPKLWFVAGVVLNVGLIGSLILFLALRKRRASAEIQQTIDKLNI
TEDGHNLRGG
>Gypsy-6_CSa_gag#LTR/Gypsy 32-898  [Ciona savignyi]
MDQQTRLMAVELSARTLKIENTKLKNEVTDLRSSVTNLQSRLRVLEARVGENDSTSSAKRFDNVTMRKELSPGVYNGRTS
WTQYKLHFENIAKFNNWDTQEKGIQLAAHLIDDAVDIQQTLSIEHRWQYSHLVNSLDRQLEAVNTSKAQSLFHAATKMPR
ETYAQFSMRLRRLIKDGHPNLPAECTEGYLVEQFVAGVNGISIRRNLAVNLPSTLMEAVDSAERIIAYDAAPRLRNDSML
SERQCGHEDEYKTPVCVVCGERGHWKRECPHNRSSVPAAQTRQGHLNGR
>Gypsy-6_CP#LTR/Gypsy 124-4566 [Carica papaya]
MARIPREQAHRVLEDRIEQSLDRLMRIVEGLATVVSQHVVHSQSATNGNNASTSNTQPMEGNNGKLIERFKRMNPPSFAG
ATDPILAEQWIMELEKIFDVLSPTSEQKVQLATFMFKGAAEHWWRLKKGSLRTPILWEAFGAAFYEKYFPDFVREQKQME
FLELKQGNMRVAEYAEKFIELARFAPNLVADGSLRARKFQRGLRKEIWDKISVLKINDYQEALERAQIAEEATSPVPQQI
QRVRPFIPNNKRKAQEPQQPDKRQKTGLIVPAQGPEQICPHCGKNHGSRPCYKLTNGCFRCGSTQHRIKECPINKEQTRP
RTQGRVYAITERDAQASQDVIQGMLTISSTLAKVLIDPGSTHSFASHEFAQHLNIEQSPLDYVLVVSTPANKDLTTSTVC
RACIVEIANRELPVDLILLDMHDFDVILGMDWLAAYHANIDCHGKTVTFNVPNDKAFKFKGIREPQHPCLVSCIQAQRLL
EKGCAGYLAYVVENKSREVNLQQIPVVKEFFDVFPEDLPGLPADREIEFFIDLIPGTSPISKAPYRMAKAELEELKKQLQ
ELLDKGFIRPSVSPWGAPVLFVKKKDGTMRLCIDYRQLNQVTIKNKYPLPRIDDLFDQLQGAQVFSKIDLRSGYHQLKIK
KEDVPKTAFRTRYGHYEFLVMPFGLTNAPAAFMDLMNRVFQPFLDKFVIIFIDDILIYSRSEAEHAEHLAIVLGILRKKK
LYAKFKKCEFWLKEVAFLGHIVSKDGISVDPVKVEAVVNWKRPTTVTEVRSFLGLAGYYRKFIENFSKIATPLTQLTRKD
TKFEWNDKCEQSFQELKKRLTTAPVLTIPNGTGGFSIYSDASKQGLGCVLMQHEKVIAYGSRQLKNHEQNYPTHDLELAA
IVFALKIWRHYLYGESFEIHTDHKSLKYLFSQKELNMRQRRWMDLLKDYDCKILYHPGKGNMVADALSRKSTCTLAYMMA
SEWRLVEEFQKLNLNVRHKRSGGYLANIKVQPILVQKIREAQQSDLTLKSIMEDVSKGLRPEFRLSEDGVLRFGNRACVP
NNNSMKNEILEEAHCSRFAMHPGNTKMYQNLRTKYRWSGMKKDIAEFVSKCLTCQQVKAERQRPAGLLQPLPVAEWKWEH
ITMDFVVGLPKTRSQHDAIWVIVDRLTKSAHFLAIRVNDPLDKLARLYIKEIVRLHGIPVTIVSDRDPRFTSRFWTSLQN
AMGTKLSFSTAFHPQTDGQSERTIQTLEDMLRACVIELRGNWDDHLPLIEFAYNNSYQSSIQMAPYEALYGRPCRSPICW
EEVGERKLVGPELVEETTEKVKLIRKHLLTAQSRQKSYADNRRRDLEFEVGDHVFLKISPIKGIMRFGKKGKLSPRFIGP
FEILDRVGAVAYRLALPPELANIHNVFHVSMLKKYHPDPSHVLRYEPLALQDNLSYIELPVQIVDRKEKILRSKVISLVK
VLWQHHSTEEATWEPEEEMKAKYPHLFVTTGKSNLEDQISF
>Gypsy-6_DBp#LTR/Gypsy 58-3915  [Drosophila bipectinata]
MELQNRNFVEMCKAMQASVRPQNQVVLPKFNPDVTGVDATQWCATASIIMDEQKIDGSALIMMLSSCMQGSASAWLAQIC
YPGINWEQFKELFIQRFEIKETPAAMFLNLLNSRPAHNECPAVYASRMVTSLTTKWRNMNVEEIAVSTILAHMANFDNRL
QRMVFSSNVQTRSQLQMELKAFTFDKKRSAGNTDGNSGDCKRAKIVCHLCKKPGHKMAECKLKRSGPENKQHRDLQNVTC
YRCGQLGHLANRCTNNAAKSGAVTEKKCNQCFVAEPKGVLTHQGEIFPICFDSGAECSLIRSSVAEKFDGKLINNIVIIR
GIGDAGISSKLQKLSKCIINGNIVEILFHVIADKHLTNDIVIGREILSPGYEIILTPDKFKLVKSKSVNVCKVSEPSALL
LNVDTEMIGNDKENLIKLLQDYSAAFIDGIPCTKVNTGEMTIRLIDPNKTVQRRPYRLSPNEKEIVRERITELLNCNIIR
PSCSPYASPILLVKKKNGSDRLCVDYRELNSNTVSDRYPLPLINDQIARLAGAKYFTCLDMASGYHQIPIHPDSVECTAF
VTPDGHYEYLTMPFGLKNAPSVFQRAIINALGNLAYSYVIVYMDDIMVVSSTIESGMERLRIVLDVLTAAGFSFNIAKCG
FLKTTVQYLGYEVRAGELRPNPRKIIALNSLPPPQTVRSVRQFIGLASYFRKFVPRFSQIMKPIYSLTSSKMRLEKLLIL
VNEPVLVIFDPQHPIELHTDASSYGYGAILMHRINGSPHVIEYFSKTTSPAESRYHSYELETLAVVESVKQFRHYLVGRT
FVVYTDCNSLKSSRTKIDLTPRVHRWRAYLQPFEFTIEYREGKRMAHVDFLSRNHIQEASKVEKSLVPEKRVNLAEISSD
WLAAEQRQDSEITDIINKLNSKELTDDVAQTYELRKGVLFRKVQRNGRTRCLPVVPHAFRWSVINQVHESIMHLGWKKTL
DKTYQYYWFAKMNKYVRKFVDSCITCKTVKGSSGKIQAELHPIPKVNMPWHTVHIDITGKLSGKNDLKEYVIVQIDALTK
FVYLFHTLRLDSDSCIQAVKSSISLFGIPQRIIADQGRCFTSGKFLEFCTSQKIKLHLIATGGSRANGQVERVMSTLKNL
LSAVESSHRSWQDALGEIQLSLNCTVSSATKASPLELLVGKEARPLGLIPPYDTEMEVDKVNARDRAIENMKNQASYDKI
RFDKNKAAVERHKVGDFVLLKNEERHQTKLDVKFKGPFLVSEVLEGDRYILKSLHNKRTYKYCHEDLRKMPDGYVPSELE
CPPETC
>Gypsy-6_Gav#LTR/Gypsy 60-4169[Crocodylidae]
MEHQASSTGTEPFQQVMNLLVQVLQQQQQQSMRQTSLQEHLLQQQMWVQKGPGECRMPKMTQEDDPEAFLEVFERAALAA
GVEKAKWAGQLGTLLIGQAQAAYREMSRGDALDYDKVKGEILRRLEITPEKHRQAFRERKTGEMKAPRGLWQRLADFLSK
WLRPESSSKEQMFDQILLEQFINDLEEDTQQWVKCHCPATSREALQLAEQFEMAQGDRRRSRNAKGVEALARRSXEPKGG
RKGNLPNLRCFTCGLKGHIARNCTQGAQAGSAMEPGRRDGRPGLGAPPEIESMDCGVGSQSAGRIRPLPEVLAWVEGSPI
QAVVDTGCAQSLVRPSLVQWEQAPRCSGVSMVCLHKQKSLVERRWLAVQVQGIRRSLPVGLKEDLLYPMILGRDWPEIFE
LYAGASRRREGESRAGGNEDGEQGDLAVDDLAQAGPFRAAQEADPELRQFWEIEGPDDSAQVRPPGRAGTPTHIEVRNGL
LYRIRRGNAEGEDVTQLIIPQAYRKQLLWLAHTNPLGGHLGKNKTEARLTRWCFWPHLYEDVDKYCRTCEACQKVSTRKP
PRVPLHPMPIIREPFSRIALDVVGPLPRGVAGHQFILVLIDYATRFPDAIPLRAVTATKIAEELMQWVSKFGIPREIVTD
QGSNFMSAVLGALCRVLQIRHLKTAVYHPQTNGLVERFNGTLKGMLRKCAQADPRKWNVMIPPLLFAVRDAPQASLGYSP
FELTFGHRPRGLLDVMREGWEAGQSTGKKAEGYVKDLRERLRAVQGIAHANLSRAQTKQKERYDGAAQERELRVGQKVLL
LLPDSSSKFLTHWQGPFVVNRRVGPVDYEIRRPGAKRERQIYHINMLKEWNESEGLLMSPDLETEGWESQPPSQTENDRE
GETIPLGAQLGASQRQQLAGLVKEFQDVFSDQPGRAAGIEHKIITRAGQIAREKWRRIPYHRCQQVKEELEQMLRQGIIT
PSRSPWRSPLVPVEKPDGSLRLCVDFRKLNALTQFDAFPMPHVNELVERIGQARFISTLDLSKGYWQIPLRKEDQQKTAF
GTPWGLFEFQRMPFGLNGAAATFQRLMDWALAPHQGYAAAYLDDIVVYTETWGQHLQALRAVLLELRQIGVTANPKKCAL
GRRETKYLGFLVGQGQIRPVRDKVAIIREYKTPLTKRQMRAFLGLTSYYRRFIPKFAELAKSLVETTKGQRKGIIEWTEE
RRTAFEKLKEALCQEVMLHTPNFAIPFTLQTDASAYALGAVLSQEVDGVQRPIAYASRQLXDPEKRYSTIERECLAIRWA
VGYFRYYLLGREFKLVTDHAPLKWLHTSKTDNARIMRWALALQPFQFQVAYKPGKQNTVADFLSRCHEEGGRGRGNRGIG
RPLPSVLRGG
>Gypsy-6_DWil#LTR/Gypsy 38-5339 via tfasty with Gypsy33_AG, 1 frameshift. [Drosophila willistoni]
MKYTEIIKLNKTALFELLAAKEVPCDREASIYQLRALVKAVMAQNQSGESDVPEEQAVSPAVSANVLAGQLVDVGPEPLI
EQPSADQVGANRLPTMSRGTPVGPDTNVHVREGAQASETDELASILSSIELYTARKNLAELKTRVMELEENLSGPEYNCR
MNLKDVETTVPKFSGDGDLSIHVWIRELEKAARVYVLSDAQCCSLGNRLLDGSAKAYMTYEKTTTWSELKDALVKVFGLQ
MTNYEIANQMRKRSIGKGESLLQYFIIMRNIAQQGNFEDTDVVKYIVDGLQDRTGLSAPLYYCTSLNELREKMMRFQTVQ
PPAKNYVPQARPSDRAQAITPAAKDKRCFNCRQIGHLMFDCPRPERPKGSCYRCFKVGHQYRNCPMRTQIAAMSSSEDPD
TIDDKSFIQLVSLRISCKGGCTDVNNIFALLDSGSPVSFASRALMPHLDCDKLVKSSFHGLSGGSILTFGTVKCLVLFCK
KYYEIQFLVIPDNIMPTQLLLGRDALNKIGLKFSLIENIRKYEKNSASLKSTIAFVYKSFCASLFTKYPKHNTISNNTTD
LYNNCNNPNINTNASPFREWLTELQTVCATLSDTGNTTVGSEFGLGAMRECRDIVHEHYIDRFSINYGLPKYMMRICLTD
TTPFHSSPRRLSYYEREIVSKTVSELLANNVIRPSNSPYASAIVLVRKKDGNIRMCVDYRGLNKKTVRDNFPLPLIEDCL
EYLESKTVFSVIDLKSGFYHVGMEEDSIKYTAFVTPDGQFEYLRMPFGLKNGPAVFQRFISNILSDMIRDRELVVYMDDI
ILATRTVDQHLKLLAKLLDRFIQYNLELNLKKSIFLQKSIDYLGYEVSEKGILPNNTHLKAIQEYPEPLNSKALHSCLGL
FFYFRKFVPNFSRIAKPLTELLKQGGPFPMNKTAKNVFLTLRSALSSPPVLAIFNPNYETELHTDASSNGFGASLMQRQT
DGKMHPVSYYSRKATAAESRYHSFELETLAIIYAVRRFRVYLEHRPFLIVTDCNSLVQTLSKKSINPRIARWSLELENFD
YTIAHRPGSNMGHVDALSRQTELLENIVEGDFDPCDLLVKRDQNAPIEPCEPHITFEESCVKPCESGRDLTKLCAIQDDS
CVESCELVKPPEFESDFIEPCVPSEKNEFSRDSIRPYAVLEQSCSEPCEIKPCEIKPFETKPCETDPCEIKPFETKPCET
DPCEIKPFETKPCEIDLCEKNPCKIDPCEIKPCEIKPFETKPCEIDLCEKNPCKIDPCEINPCKIEPCAPLGKNYLGPFG
TNPCVHLAKSCFRPCELCLERSRLKLVKNKPCVSLNESSVDPRLSNQIERSDQLDRNESANLVGVVGASPQDVDLLLQSE
QIRDPDIRKLRENLEKGNDVGFELIDGIVYKRNAKERLCLYAPARMQGELIRRCHEKLGHLGVEKCVNNLKEKYWFPLMN
PKVESFIKDCLPCILHSVPRTIHNRTLHSIPKSPIPFDTIHVDHLGPLPSVTSKRKHLLAVIDAFTKFVKLYPVNSTSTK
EVTAALEKYFDYYSRPRRVISDRGTCFTSFEFAEFVENRNIDHIKVATAAPQANGQVERVNRVLTPMLGKLSEPLAQADW
YKLVNRVEFAINNSVQCSTGKTPSMLLFGCDQRGPLVDELTEYLDEKFSSENPCNLEATRQEASAKIQLSQERNEKRYAL
RHRAPLSYRVNDFVAIRNVDVTPGSCKKFAPKYRGPYKINRVLPNDRYEVTDIDDCQLTQLPYKGILESARLKPWMHACD
KTVSFCL
>Gypsy-6_AA_pol#LTR/Gypsy 3192-6308 [Aedes aegypti]
PHVQVRIFNEEIEALLDSGAGISVTNSKRLIEHHGLKILPSPIRICTADKTKYSCVGYTNLPITFKGITRTISVVIVPEI
SRTLILGINFWKAFDIKPMMQGISGLEEVAEIGQVEETLGTELFHFFIHPIETIPAIVPSLPDKTLDIPELDLPEASKTT
PETLEIEHDLSAEDRKELEDIIRQFPCTTENCLGRTTLLQHEIILREDAKPRRQPIYKCSPAIQAEMDREIERYKKLDAI
EECTSEWANPLVPVRKSNGKLRVCLDSRRINALTKKDSYPMRDMRSIFHRLGSAKFFSVIDLKDAYFQIPLKEESRDYTA
FRTATGLYRFKVCPFGLTNAPFSMCRLMDKVIGFDLEPYVFVYLDDIVVATETLSEHLRLLKLVAERLRKANLTISLDKS
RFCRKQVSYLGYLLTEKGVAIDSARIEPILNYTRPKSVKDIRRLLGLAGFYQKFIKNYSKIAAPISDLLKKNPKKFLWTE
SAEEAFQNLKSALISAPILTNPDFSCPFIIESDASDNAVGAALVQNINGETKVVAYFSKKLSSTQRKYASVEKECLGVLM
AIEHFRHFVEGTKFKVVTDARSLLWLFTIGIESGNSKLLRWALKLQSYDIELEYRKGKLNVTADCLSRSLEAITPIDPDY
EDLIKQIIKDPQSYPDFRVIDNRVYKLVKNQGKIEDTRFLWKQYLPISERERVIKDIHDKAHLGFDKTLTAVRERFFWPR
MSTQIKTFCRNCLTCQTSKATNINTTAPIMAQRKTADYPWQFLTMDYVGPLPVSGKGRSTCLLVITDIFSKFILVQPFRQ
ATADSLVPFVENMVFQLFGVPEVILTDNGTQFLAKSFQDLLEHYNVTHWRTPNYHPQVNDAERVNRVLTTAIRASIKKNH
KDWANNVQTIACAIRNSVHEATHYSPYFVMFGRNMVSDGREYRYLRDNVEANDSTNIEREKLYAEIRENLKKAFEKHSRY
YNLRANANCPTFSLGEKLLKKNTELSDKGKGYCAKLAPKYIPAVVKRKVGEHCYELEDEKGKRLGVYNCRYLKKLTSSS
>Gypsy-5_DGri_gag#LTR/Gypsy 1252-2664 [Drosophila grimshawi]
MQSNELSESLANLKLGAASTSSQRNTQSGNTVYTSQSLKDTIVSLVKETLQGGDIIRQAINTEGNDCLNDIPFTSPRLGK
EQEKVPEITRLIRDFSGDRTTFGSWKKNVERIMTIYNGQEETYKYYLITLSIRNKIIGEADAVLESYNTPMNWKAISKCL
TEHYADRRDLKTLEYQMFYLTQGRLSVQEFYQMVYHQLSLILNQISVQEDAPEVIRALTNNYRGKALDTFVRGLNGDLPR
LLAIKEPRDLSHALHLCNLVENQEHRNAFLPKPRQQIPPLPPRNHIPLHKLPQNNNSVQWRNFNPNLYHTPKPNMNHQMA
QQHNQYPQPFRGQYTLPPQSFNPRQGYQAPPRPFFQKPEPKPVPMEIDNSIRTRNVNYMNKPRTNGFVGKHPSNAPSGQP
PKIQRQFHISTGQSEGGGEQPNPYGMMDEEQIYLEDAEPEGAHALSDEERSGTYYGCQPTTIDASDIHFLD
>Gypsy-5_DBp#LTR/Gypsy 618-4566  [Drosophila bipectinata]
MCIEISKFLQMNAELPIKPFLCESIDKALLRLEWEKWLRAFKIYAESEEITACKQKRTKLLHLGGIQLQSVAYSLPDAVI
DFDEEEQNDVFQVLVDKLTAFFSPKQNSSFERHMFRSLIPSGDESFAKFVLRLRQQIKRCDFGSTKADIEEICLKDKVID
AWASGDLKRKLLEKEHSLDEILEACQVDEEIRKESAMMTKGTEEPVNRVATSKPKGNRRNFECERCGRTGHKDDCPTCPA
RQSKCNRCGRLGHFGRKCRTNLKRQNSQWRSTNPGETGSYTKKPKTEDCFKINCDEQEECLKCKVGGADISLIIDSGSRY
NLICQDDWSTLKRNKATVFNVRPNSQNQFKGYASDQILNVICVFEAPISVGKQAEMIASFFVIEKGQQSLLGRETAIKLD
VLRLGLQINHIEEVSVFPKWKGDSVKLAINQDIKPVQQPMRRIPIALEGKVREKIQDALKRDIIEPVNGPSAWISPMVLV
FKENGDIRLCLDMRRANQAILRENYPLPTFEAFMTQLRDARYFSRLDLKDAYHQLELHEQSRAITTFITPLGLFRYKRLM
FGVNSAPEIFQRRLEQLLSGSSNVLNYIDDIIVFGKTEDEHDEALKRVRGILKENNAVLNEKKCVYKASKLHFLGHILSN
HGIEADPEKINTIASFRPPKNKEETRSFLGLVTYVGKFIPELANKTDPLRRLLKKDEKFTWGAPEQDAFDKLKSCLAKIP
NLQYFDPKHKTQLIADASPVALGAVLLQFHGDDEPKIISFASRSLTDVEKRYSQTEKESLSLVWAVEKFFYYLAGLEFEL
ITDHKPLETIFKPSSKPPARIERWLLRLQAFKFIVKYKTGKENIADTFSRLCELNPGYCYDMKGEHSILHVIENATPSSM
TITEIAEKSINDEEIVDAMSCLQDESWNASSSNSLFPFRHELSLIGSIMMRGTRIVIPKALRQAILTLAHEGHPGESAMK
RRLRSKVWWPQIDRDAEKFVKSCRDCIMVSQALNPTAMKRTTFPEGPWIFVATDLLGPLPNNEHILVFIDYYSRYMEYKF
LKSISSTSLISTMKEIFTRLGYPKKLKTDNGRQYVSAEFKEYCKQCGIEQVTSPPYWPQANGEVENMNRSLVKRLKIAYT
NKKNFKEEIQSFVMMYNVTPHGTTGSAPTELMFNRVIRDKIPGVQDLMGEYSDSVERDRDLVNKQKGKEYADKRRGAKEI
NVEVGDKVFLKNVIFPHKLTPNFDTTEYVVKGREGDIIRITGGGKTLTRNVSHVKKIPQTQPPAETEDHSPPSRSTGDVL
QPLNFRTLDESKQMESTSETTSAPGEGLKLKLINKGG
>Gypsy-5_DGri_pol#LTR/Gypsy 2646-5787 via tfasty with YOYO_pol, 1 frameshift. [Drosophila grimshawi]
RHSFFRLNSSSLPYFQCITRNGNTLNFLIDTGSNQNYIQPSLVPSPRPNQNAFNAMSVGGQTKISHHTFLTLFGQRNRPI
QFFLLPTLKTFHGILGNDTLKQLNAVIDVRNETLAIDGNYRIKIRQLETQAVNNIKVRTEHMTNKQKHFIDHVTKTRSTL
FAEPDEKLTYTTRVLGEIRTTSDSPVYSKHYQYPTSLRGEVEKQIDQLLRDGIIRPSRSPYNAPVWVVPKKSDASGEKKF
RIVIDYRKLNSVTISDRYPIPEIGEIIAQLGENKYFSVLDLKSGFHQIPLMARDIEKTAFAVNGGKYEFTRLPFGLKNSP
SIFQRALDDILRDHVGKICYVYIDDIIVFSKSEDEHINHLNTVITTLDDANMKIQIDKCEFFKTEVDFLGFTISADGIKT
NCEKVRAIKNFPTPKSLKDLRSFLGLSSYYRRFIRDYAKLAKPLTTLLRGENGRLSKNLSHKAEVTLDNNAIKAFDKIKN
TLSSNDVVLAYPKEFHLTTDASNFAIGAVLEQEGRPITYISRTLSKTEENYATNEKEMLAIVWALQNLRMYLYGTSRVII
FTDHQPLTFALSSKNHNGKLKRWKSYIEEYNHELRYKPGTSNVVADALSRNPPTPEINNTTTSTVQSDDSSSHNLIPVME
VPINVFKNQLFLLTSETESYEFQLPFPTHHRHIVERPDYSEDDLIDILKKRLDPKIVNGLFTTENIMAKIQNLYPYHFAS
YKVRYTQKQVQDVTCESEQLEIIAKEHTRAHRNAIENKIQILNNFFFPSLKKKIEKITKACETCKESKYDRHPQKGELQP
TPIPTYPGQIIHIDLYTTERTIVLTAVDKFSKYAQIKILNSKAAEDIKHPLREVMIAFGMPKLVVMDNERALNSASIKFL
IENQLKSKIYTTPPYSSTSNGQVERFHSTLTEIMRCVKKDDGITNFEDLIFKSTQLYNQSIHSTVNAKPIDIFFGTRITN
DPQELEKNRNKVTDKLKNKQANDLEYHNNKKKAIKQYKKGDTVYCKIDKRLGSKLTPKYKKEIVEENRNTTIKTQGGRVI
HKNNLKT
>Gypsy-5_DWil_gag#LTR/Gypsy 2225-3115 [Drosophila willistoni]
MVTWDDIIEKARIHAQELTKSCKCLSQNRETSQDTVTKHTKIVTENLQAIRAVLTEHYSKLKTWQKTDANAFYSDCKQKA
ITVLNRHNIEFKQTSDLETSIVLEEKTQLMADEEISQEEPSVISRNKPTIPKENNKMVQTRVEFINTATKLIPYFDGDSK
SLPGFIGALRVLDTIKEPHEAVAIQLIKSKLKGQAANSLSSEKTIDEVIQRLSTIFKGDSVDLLTAKIKNLQRNPNNCVS
YTNEITELTDALKGAYISDGLPTEQAIKYTTKVAVNAMVGHTKSPRVQLLMESGPSK
>Gypsy-5_DVir_gag#LTR/Gypsy 323-1342  [Drosophila virilis]
MNKLNDQNLNQLLQQIRNVPAFEGDPITLGPFIRRMDYLLQLYSTHNERQQCIIFGAIELQISGDAQKVPRMLQINNWSQ
LREALISEYKTQTPVEELLRRLYNTNYQGNLRKFCSEVEAKIIIITDKLELEGNLDNSRLYTNAMHNTVKNLINKKLPDR
LFMSLARHDISTISKLKQVAQMEGYYEENYYNNNKKQNTNNAINYTGNTKPQFTPSYITNNNQSHNFSHHPPNNQTYFNQ
NKQLAQEFKQNLQQAQINNPINQNISQGRYIPNQPYKRIRENTSGSQKMQVDENYQQSENYQGNYVQEEYGCQNNQYEVF
QNNEIKDENFPIGASGQAST
>Gypsy-6_NV#LTR/Gypsy 33-3995 [Nematostella vectensis]
MSVIGQLREFDRQKESFEAYIERLENFMKANGVRKENEVAVLLTAIGPETYGLLRNLLTPEKPDTKTYKDLVDILSGHLH
PKPLVIAERFNFHNRFRHDSETVADFGAQLKKLSTHCEFGTFQDEALRDRFVCGLRQEAIQRKLLTEKTLTFAKALEIAQ
SMEMAESKSSELKGSGSSGSGCVEEVHQLGKKPQKHKKFTQNKGGKPKTACHRCGSAEHDGKSCKYKKYKCDNCGKVGHL
KRVCQSKECKETKYVEVSVDNDQEDESLGFFSTREPSSKAVTVTITVNGKEIPMEVDTGAARTVIPEKLFKENFGHLKLK
NASTSLKTYSGTVLPLIGETEVLVEYEGQSAKLPLIVAKVESKPAILGRNWLSVVKLNWEHLFSVSSSDLVHELTARFKG
VFGTGLGKIKEFQARINVQPEATPRFHKARPVPYALKPAVEAELDRMEKEGIVTKVSHSEWAAPLVVVPKADGGVRLCGD
YKVTVNPVLDVDQYPLPNPQDLLSALAGGTKFSKLDLKHAYQQLPLGEESKKFLTVNTCKGLYQYNRLPFGVASAPAVFQ
STIDTILKGIDGVVCYIDDILITGRNDQEHKARLEAVLERLEKYGISLKLSKCSFLEDRVGFLGHVIDAEGVHPSPEKVR
AVVDAPAPTNVTELRSFLGMLQYYGKFLPNLSTLLHPLNNLLRDGVEWSWLPECEQAFTSAKELLQSAKVLTHYDVNLPI
KLACDASPYGIGAVISHVMPGGEERPIAFASRTLTGSEKNYAQLEKEALSIIYGVKKFHQFLYGRRFILETDHKPLLTIL
GPKSAIPTLAAARLQRWALILASHQYDVVYRKGVDHSNADGLSRLPVDKPRVSEETEIYHFSYVDDLPVTARDIAMETRK
DSVLSKVLHYVKSGWPQQTQEEELRPYFNRRLELSVEQDCVLWGLRVIIPEAFQEKILHDLHADHPGMCRMKSLARSYLW
WPKLDQAIENMVHHCEACQSVRKQPATAPLIPWKWPVRVWQRVHMDYAVKDGVNFFVVVDAHSKWPEIIATSSTTAPKTI
EMLAGLFASHGLPEEMVSDNGPPFISSELDMFMKSNGIRHTRVPRYHPASNGEAERYVQTLKQALLTSKFDQGKSLQQRL
SSFLFSYRNTPHTVTGQTPAELFLKRKPRTRLALLQPNLAQHVEERQMKEKQQHDGGRTKTREFLPGDIVLVRNFRGKHK
WDKGTVILRIGPLAYQIRIGGRMCHVHVDHLLAAGDAEHTSPPTTATAMTGSGFVLPSTPVVSSKPILPEPEVTPLPEVS
PKSSETVVPTCTTESPPDVASTPVRRYPRRTPKPVVRLDL
>Gypsy-10_AMi#LTR/Gypsy 23-4207 via tfasty with Gypsy-19_AMi, 3 frameshifts. [Crocodylidae]
MEDPDMAAYANAQPVPMTAADVLGQNLQALTQIVDSQQQMFDRQQEWLRRSQVSFKMPKMTKDDDPEAYIEAFERHALMT
GLPQDYWASQLGALVVGEAQAAYRAIPRDEARDYERVKQAILYRLEISPDHYRRLFRARKGPDERRPRVLLQLLRDLLDK
WVNPVGSDREDLADQVVLEQFQNDLEERTQRWVRQHSPRNCEEALKLAEAFAAAEASYPRERRSPGPASVPPKEAERRRP
PIRGAGRDVVCFRCGQSGHLSRECPTQPAARWVPADKPRGFPDRRRSPEVGEPMDCSYASCEGNATWSRPTVKAWVDGRP
VRATLDSGCAQSMVRADMVRRQAGREVPPVTVACLHGEVERVGRQWVQLRVMEHQGELLVGVVPKLACEMLLGRDWTPLY
DVLERVRDVELARKKMGASEGWLGEVEEDPADTEEPISLDLGNITSSRQFREAQGEDPELGTLWRQAHEARDEAASPTEE
HPRFEVRNHLLYRVPGPRREGPVEAQLVVPSQFRQVVWQLAHASPVGGHLGRDKTLAKVGRWFFWPGMGEEVARRCAACP
ECQKTRTERPARAPLQPMPVIDTPFARVALDIVGPLPRSSSGHQYILVMVDYATRYPEAIPLRTATAPRVAEELIKWVAR
MGVPREILTDQGRNFMSGVMKVVCQTLQIRQIRTSVYHPQTNGLVERLNGTIKRVLRRCIQGDPRKWDLLLPLVLFTLRD
TPQDSMKFSPFELVLGHRPRGWLQVLREEWEQDSGALQDPAGYRQAFQQRIRTAQDIARENLREAQARQKERYDGSTKER
VFEPGQRVLVLLPTSTSRFLTQWQGPFEILRRVGPVDYEVHRPGHLREKQIFHVNLLREWKEPAGWVTFVENDEEDLGPQ
GSGQDVAPPGEVEQLIGVGEDLSEPQKQETRKVIREFQDVFCKEPGWVRGAIHTIKTPPGAIVREKWRPIPHHLLEAVRE
EVSSMLRLGVVRPSRSPWRSPLVPVRKPDGSLRLCVDYRRLNALAVFDAFPMPQVDELIERIGEAQYISTLDLAKGYWQI
PVAPADRPKTAFGTPWGLYEFVRMPFGLHGAAATFQRLMDRLLAPHAGYAAAYIDDIIIYSPTWTHHKQALRAVLSELRQ
AGLTANPQKCALAKRETKYLGFLVGRGTIRPLADKVETVRNFPAPQNCRQLRSFLGLTNYYRRFVPHFSELTAPLTEALK
GRRNGAVKWTEQMEQCFGKLKQALCEDVIMHTPNFRKTFILQTDASETAVGAVLTQEEEGIERPIAYASRKLSSAERRYA
TIERECLAIRWAVDHFRYYLMGREFKLVTDHAPLRWLSTARTDNARITRWALALQPYKFQIVFRPGKSNTVADFLSRCDS
KNSGERMEPQTDKPDNSPGMTRKGKIGAPQGILRGG
>Gypsy-9_AMi#LTR/Gypsy 174-4107 via tfasty with SUTRVLEP_pol, 3 frameshifts. [Crocodylidae]
MDALQAPSCLSLSGNIAENWRKFRQRFELYLAAIGAEEKTDKVKSSIFLHVVGEEALEVYNNFTFAPGQNMKLNEILNKF
EEYCVPKRNETFERHRFFMCMQKPDESIEHYITELKRLSKTCVFGDVTDSLIRDRIICGIIDNGLREKLLREGDLSLEKT
IQICRAAETVKAQAKELNAAEGVVHAIRSKDRQKRPLQMEVAPATTTTTKGQMEYRQACSRCGMQHGSKRCAALGKLCFN
CGKNNHFAKCCKVQAHKVQVHTAEDTPEGEYYIDTVESSRATEKDWILPLEVHGIMIPFKLDTGAQVNILPEQDYKRLKS
KPKLRPTKVTITAYSGAKIPVKGKCLACIKHKNVVYNLAFIVVPKEVTPILGLAACEKLNLVKRVLALEHSGSGYEDLIL
EYQDLFQGLGCLPGEHTIQINKQVPPVIHPCRKVPFALRDKLKAELKRMEEAQVIQKIEEPTEWVNSLVIVEKNNGQLRI
CLDPRDLNKAIKREHFKLPTREEIMAQFANAFFSKLDASSGFWQLKLTEESSKLCTFNTPFGRYRFLRLPFGIASAPEVY
HKTIHMIYEHIPGVDTSMDDIIIWGSTKEEHDRRLREVLEATRAANLKLNRQKCVFGATELTFVGDIISREGVKPDKKKI
QAIEMMPRPQSKKDLQRFLGMVNYLGRFIPNLSTTAAPLRMLLESKNEWCWNPEQEEAWKALKQQLIQEPVLKFYTPGKP
IQISTDASQLGLGAVLLQNFDNRWQPVAYASKSLTEAESRYAQIEKELLGILFACQRFNQYIYGQKVNVETDHKPLIALF
RKPLNDCTLRIQRMMIKLQKYDLVVNYTPGKFLFTADALSRAIASTGQAEKTSETEMQAYVDLIVSSLPITDRRLQQIKE
ETEKDHSLGILKEMIISGWPEDRSTCDLRVRDYWNCRHELSVIEGVIFKGSKVVIPRTLQRGMLQKIHEGHLGIEKCKKR
AREVMYWPRINQDIANTVENCSTCLKFRPCQQAEPLKPHPVPHRAYEKVGTDLFTWNSRVYLIVTDYYSLYPEICTLQCT
SSRSVIACLKAIFARHGIPDEVFSDNGPQFSSAEFRQFAMDWDFRHTTSSPNYPQSNGLAERSLQTVKNLMKKALDSGGD
LYKALLAYRSTPLDNGWSPAQLLMGRRIRSNLPITNTLLESPNTVAIRRMKEDQKKKQKYYFDTRARELSLLKPGDRVCL
RNYLSRTWDQQGTVKQLVHPRSYLVQTDQGGMLRRNQRDLLVLPLSSRTSAGDTDLDQPQLTVPSSSSSSSSEGEDTNDP
TESPQTSNEEPILRRSRRQVKRPERLIEVCE
>Gypsy-10_DWil#LTR/Gypsy 400-4432  [Drosophila willistoni]
MSTPKTKKTVAKPVVKRASQKEIGDIKHKTTSMSEKAEHTTPIPIQSEMGDELKVCPNEYHMEEAEQSAEDKMEQIIQLL
SLKIVSDEKRDGQMKISADNFGKVVGEYDGKSIQVEKWLEIFERNAEVYDLSEKQKYCYARAKMSGAAQLFLETENICNY
EELKSALVEEFTCNYNSADIHQLLQERKRKNSETLHEYLLQMKKIASLGYVEDTAVISHIVNGLDIKNEYKVAMYRCKSF
KALKEEFDIYDRLNISEKKVNKEQQKSFFKQNNGQMAKKEYCFNCGSGNHKRNKCDAETKCFKCNQNGHISRDCPKNADK
VRVISNRSRLKKIRINGVEVECLVDTGSDVSVIKESIFKRLKNVALIEDIRVLHGLGNGTAKPIGHFTADVVVDKLNTNQ
KFIVLPNNQIDYDGLLGDDLIKKFRLVGSKEGYTFLEENSDEMPLNEFALIYNVTEESSFIAPPEYRKEVEQMIESSYHG
SPEVVKQCPIQLKIIPDGVIKPFHHSPSRLAADEASEVKKQVEQWIKQGIVRKSSSNIASRVVVVKKKDGTLRVCVDYRK
LNKMVLVDCFPVPIIEEVLEKLQPAKWFTIMDLENGFFHVPIEEQSKPYTSFVTKEGLFEFNQAPFGFKNSPAAFIRFVN
HIFQELINSGVMQLYMDDIIVYAETPDVCMRRTKMVLETAAQFGLKMKWKKCSFMQTRISFLGHIVENGRIWPGKEKTAA
VSRFATPKDIKSVQAFLGLTGFFRKFIPGYAQIARPLTNLLRKEAVFYIGEAEQQSLQTLKNLLVMDPVLHIYSREAPTE
LHTDASKDGFGAVLLQHFGGYLHPVYYWSRKSTEAESKRHSYYLEVKAAYLALKKFRHYLLGLKFDLVTDCAAFKQTTTK
SDVPREVSQWILYMEDFTFNAVHRPGDKMRHVDFFSRFPLTSMVVTTELTTRIRKAQLEDNFIKAVLEILKQQSYQDFKL
KGGLLFKVVNGNDLLAVPKLMERDVIQGAHEVGHFSTAKTMHSIQQQYWIPHLERKVANVIANCISCIIFSKKLGKQEGY
LHCIEKGDTPLHTLHIDHLGPMDATAKQYKYVLTAVDAFSKFVWLFPTKSTGYEEVIKKITDWSAVFGFPRRIISDRGVA
FTSNAFAEFLNENKVEHVWTTTGVARGNGQVERVNRSILSIIAKLSAHDSAKWYKFVPQVQKAINSHVHASLKLSPFEVM
FGTKMNSNADGRLLEVLNEELITQFNSEREELRSRAKENIENAQQAYKKNFDKRRRAEYGYRVGDMVAVKRTQFVAGRKL
ASEYLGPYEVTKIKRNGRYDVRKAASVEGPNITSTSCDNMKLWRFISENDELLSSGTDEDEQEGR
>Gypsy-12_DPer_gag#LTR/Gypsy 303-1691  [Drosophila persimilis]
MESHTEEQASGYYPGEFVANPGVSTGWIHKRRREELESFAEEFGFSREGNVEDLRRSFAELVAGPLEHDAWVRLAELERQ
YARSPGRARSPQPDTSAPTEKRKTDPKLSLQVPGIMEGKASTSPTSITAEDLPKPPPPEPRPSPMRRILPTAGGNGPTDG
HYYSHAAQMAERIRKWGIQFDGQDDPLSFVELLEERALSYGVDMNYVPRAMAELLTDRANRWFRTSRLQSASWADFRQEF
LAFFLPPRYFEQLEDQIRDRKQAVGEPFKDFVIELRLLMHHAGYDEAKELSRIYDNTLPAYQLYVRRHELRSLTQLTMLA
TEFESIQERNVPATLIPPRQPPRYTRPTAQQNESGTNRAQFRKPHWNTSEPARKPHQAGASAQEATHRMITTPIANPHAA
CRRCGEAGHVSRDCTNPSILFCWECGKRGTRTVGCCRQDPSGNDSRPQLTREQPGTTLPQKTN
>Gypsy-12_DAn_pol#LTR/Gypsy 934-4155  [Drosophila ananassae]
MLLYSVQRGRPKKLNATVRGSGGSLDGLSNFASSYHQAFQINVHRISYCNRLFVPDAQSGRKFLVDTGADVSIIPXSTIH
KNIQNANRHTLFAANGTEIKTYGTIRLTLDLGLRRPYTWNFVIADTNTPIIGSDFLHHYNLLVNIKEAKLVDAKTRLTCC
GIHTHQNSSIIKTFNTSNAFAQLLEEFKDITQFNTITHRPSSTTSVTHVIDTKGAPPFARPRRLTPEKLRAAKNEFQYLM
DMGVCRPSKSPYASPLHMVRKPTGEWRPCGDYRALNAQTIPDRYPLPHIQDCTHVFYGKTIFSKIDLNRAYNQIPIEPKD
IPKTAITTPFGLFEFTHMTFGLCNAAQTFQRYMHTAFRDLDFVFVYVDDIAVASANIQQHHIHLRQVFEKLQEYNLTINP
SKCSFGKESIEFLGHKINHQGIKPLQTKVKAITNFPLPKVAKELRRFLAMINFYRRFLPNAIQHQAPLVQLIPGNKKNDS
TPINWTTETIDKFNSCKNSLAQAALLAHPAPNANLSLSTDASNIAVGAVLHQVINSEYQPMGFFSIKLSETQRKYSTYDR
ELLAIYLGIKHFRHMLEGRVFHIRTDHKPLVYAFDQKPEKASPRQLRQLDFIGQFTTSITHVAGDENTTADTLSRIEAIG
DNCINYNEISDAQLRCPELQKLLNSNTSSLQLKAVNIPHTHHSLICDVSTSSVRPFIPQPLRNKIIEKLHNIAHGGVKAT
IKLLKQRFVWPSMHKEISEFVKHCIPCQRSKITRHVRSPLQHFTLPNQRFEHINLDLIGPLPQSGPYRYCLTIIDRYTRW
PEAIAIEDMQADTVASALIRSWISRFGIPARITTDQGRQFESRLFNELSRLLGIDHLRTTAYHPQANGIIERWHRTLKAA
IMCKNHANWPQKLPIILLGLRTAYKPDIQATPAQLVYGTTLRLPGEFFHQSNKIQSQTEYAKELEKIMQEIRPAQTAHHD
TSKPFIFKELETTSHVFLRNDAVRTSLQPPYDGPFEVIERNDKHFTXSVAGRAVKVSVDRLKPAFVIMQHPIDKSSTLEP
PNKGPDLQALGESPETTSPPRPRRTIRLPARFAP
>Gypsy-8_SMo#LTR/Gypsy 60-4829 via tfasty with Gypsy-6_SMo, 2 frameshifts and 5 stopcodons (probably has two small foreign insertions) [Selaginella moellendorffii]
MARAGRKRTQAETEPPPELEPPVEQEAMDEESLHEEDSSEETSKQESGGEVRSSKARLDVLEGQLAQTNALLETLVRKLK
RDEKRKKKRKTADAGSAEGADPSAGTEAKPDKVEQTEVESVPQAVPKYKPKPPPVFKGVNDYKVVEDWFYDMEDYFRALR
LPSSEKVPCAKPYLADNAKSWWRTTEANEGPVATWDMMKARIRATYVPPNATLHLRDELSRLKQTGTIQEYVNGFMAKRI
LVTDMGDMDAFHAFISGLQTWARGEVMRWNPTNYKEALDAAIKVHFNDNLRKGNTTGSGSTFRKGAKPRGTYSRGKFKKS
FSKNESSGFRKGKSGGQRASTWGSQAKRDKPTDKKVKSYSSVGNNVCYNCGEAGHFSRECPYPKKARANMAIKSGEVQTE
VCDPVPNSKLLITRATLVESRSRHLLALRGKLGGSFVKILIDTGASDNFVAADIVRQAGLTVQRLGEPRTIEFVQGSQST
DEVLRQARVEVGTWKVDMDFTVLDMAGFDVIFGMDWFNRFVVALHGQGRNLVVLANAQGRRSRVEAQDLKVGQSKAKESC
LNLVSTRGQLTKGTKAAFLCLLSVKSDKKTRTEEVPLVIQRVLDQFQDTMPEELPAGLPPARPIEHKIELVEGAEAVVRP
PYRLNEKELKELKCQLEELVDKGYVRLSKSPYGAPVLFVKKKDGSMRMCIDYRLLNKYTKKNKYPLPRIEDLFDRLGKAK
YFSRIDLRSGYYQIRVAEEDVEKTTCRTRYGSFEFLVMPFGLCNAPATFSALMNHVFVPYLDHFVVVYIDDILIYSETLE
EHAEHLAKVFEKLREHKLYAKESKCDFAQQEVKFLGHVVGQDGLKVDPEKVQAIQEWERPSNVHELRAFLGLCNYYRKFI
RHYSRVALPLTDQTGKGKMVWTAECEAAFVHLKGKLRKAPVLALPDFGKDFEVDTDASDFALGAVLKQDNHPVAFFSKKL
DKAQRKWPAHEKELFAVVKALKEWRHYLGRHFKVYTDNVATKHFLSQPDLRGKQGRWANALAEFDCEILYKPGKSNIVAD
ALSRKASLRLAISSATATFWDDVRTAYENDGLAQEVLLRNLEAREAHQRGELPTEEKTGYAERNGLIYYKQTRVYVPEGE
LRKVALEECHDGPLAGHGGVPKTMGLLKRKYHWPDMAKDVQDYVKTCPTCQQVKAVTKASGGLLQSIPIPDRPWKCLTMD
FITGLPPSEGFDAIFVVVDRFSKMAHFIPTTTDVDAEGVAKLFFEQVVRVRGRPEEIISDRDKIFTSRFWRTLLEQYRTK
LKFSTAYHPQTRxWVLSQDxWHxHFLTDGQTERVNRQLEDYLRCYVSGDQTDWVSHLGLAEMCYNNSPHSSIGVSPWEVI
NGRAIEGPVELGVAEYHGELPAVEAFTAERLNIWNLVRDSLERAQQRQTKYANQKRRDVEFQAGEKVWLNTKNLRLPSGI
SRKLTQRxRCMYSCKxIDLEFLKRFAGPYEIEARIGKVAYRLRLPREMGKMHPVFHVNLLKPYFEDPLRKDQVRPLPEVI
QGEEEYEVEAILNARKSKRQGREVREFHVKWKGFPHCEATWEPEENLANARDLVEEFLQGRTLCTYAKFN
>Gypsy-7_DBp_pol#LTR/Gypsy 2136-5285  [Drosophila bipectinata]
MLPEVGKCAAVPATGRRAGIARCCLSKLIGGLSGEEQQLTATIEVEGTEVKAMLDTGATASFISEELAESPEIAGKRVAI
RRRVKLANGSHTETRAAFQARISFGDRTKTLNLLVMPGMEDSLVLGWDFLSEFGATVTCAGHRVTIPKRERWGGCLEDRL
SVAVAGCPEVWEDERDKRFIERELEAFAGQRGCSNITQHRITMKDDIPIKQRYYPKNPKIQGEINAKVEELLEKGCIEPS
NSAYSSPIVMVKKKTGQWRMCVDFRQINAKSVKDAYPMPRINFILEQLREARFFSSLDLKDGYWQIPLEEGSRKYTAFTV
PGKGLYQWKVMPFGLHSASATFQRALDQVIGPDMAPHAFAYQDDIIVIGRTKEEHMANLREVFRRLKAANLRINTEKCHF
FRQELLYLGHRITSQGIGMDPGKVAAITELQPPTNVKGVRQFIGMASWYRRFVPDFAGIAKPLNDLLRKGTKWEWTPKHQ
EAFETLKSRLAEDPVLACPDFEKKFVLQTDASDYGVGAVLTQDTEEGERVIAYASRTLIGAEKNYSATEKECLAIVWAIR
QMRPYLEGYQFDVITDHMALKWLNNIESPLGRIARWVFELQQYDYVISYRKGKLNVVADALSRQPVLEKLRRTADPEVKE
CVWISALKKKMKASPQKFPDYVEEGGLXYRHVPHRAGSEEVASWKLCVPTESRQQVLKENHDAPAAGHLGVRKTIARVAA
RYFWPGMQRDIRKYVRRCETCLKYKPCQMQAAGQMLTQVPEEPWATVCADFVGPLPRSKHGNTMVLVMMDRFSKWTEIVP
LRKATTEALQKAIRERIVARYGVPKIMVTDNGVQFTSRSFKKFLGELGVRHQFTAPYTPQENPTERANRTVKTMIAQFAG
EDQRTWDEHWPELMLAVNSAVSESTGYSPCFVTQGREPRMPRALFDENALGTGVGQGTPTENATKLKEVFEIVRRNMERA
AQDQARHYNLRRRKWSPKVGETVWAKEHHLSKAAEGFAAKLAPRYDGPYTVVDFVSPVIVIIRHGRTNKEKRAHVSELKC
QDMGSPAKEE
>Gypsy-7_DAn_pol#LTR/Gypsy 814-3936  [Drosophila ananassae]
MSPTVLVFLRTKKLKQSSDSADKFEENHNTIARLAINDNYSKTQFLIDTGADISVMPPCRIAKTMLTPKLLFAANGTKIQ
TYGEKRITVSLGLGRNFVWTFVLADVNCAIIGADFLQHFDLLVDMKRRKLIDRATLHESTCHAPQRKINAILSYDTSNQY
ARLLHEYRDLATINSNRLPAESEVTHFISTNGPPTHARARRLAPDKLKAAQTEFSYLIEKGICRPSKSHWSSPLHLVKKA
NGEWRPCGDYRALNNVTVPDRYPIPYILDVTSILHGKKIFSKIDLQKAYHQIPVEPQDIPKTAIITPFGLFEFLFMTFGL
RNAAQTFQRHINNVIQDLDFVFAYIDDILIASESAEQHETHLRTILDRLRKAHLTVNFEKCQFGKSQLTFLGHDISQHGL
KPSEAKVEAVRHFKKPLIAKDLKKFLGMINFYRPFIPRAADNQHILQTLIQGNKKNDKTPILWSTEADHAFDACKNELAN
ATLLNYMAPNSQLTLTTDASDDAMGAVLHQIVNEQTQPLGFFSKKFTPTQKKYSTYDRELTAIYQAILHFKFALEGRNFI
IFTDHKPLMYAFNQNSEKASPRRARQLDFISQFSTDIRHITGEENNVADLLSRIEAIKHIDFDEMALEQENDDELQSLLN
SDPENTISLTKLSLSGSNKQLYCHVANNQIRPFVPRCLRQTVVQALHSLSHPGVKATNKLVGKHYVWPHMAKDVAKIVRS
CIPCQKAKIQRHTKSPLGEYAASDARFEHINIDIVGPLPSSNGYRYCLTCIDRFSRWPTAIPLVDITAQSVANALISGWF
ALYGIPLHITTDLGRQFESTLFQELARICGFKHLRTTAYHPQANGMIERWHRTLKAALKCADPINWSSSLHLILLGLRTT
VKSDIGLSPAEMVYGTALRVPGGFFTPNTQKHTESEFAEALQKTISQLPTTKPVHHHTPQEFVHPDLNHCTHVFVRVDRV
KTPLEANYEGPFEVLAKHDKYFTLKGHTKDNKVSIDRLKPAYIFQNESPSTQGKTTAPTAQPTDQLSRSGRRVRFPTKYL
S
>Gypsy-7_DEu_gag#LTR/Gypsy 683-2044  [Drosophila eugracilis]
MSWEYREVKQEIRSDDSDDSEEVGFRPEVRDIDQPEMNAEMVQALVANAVSAALVEQEARLRNDFATELGAVRAQVSALS
VQAPQVEVYQRVVPDPAVRCDVKLDIVKSLPTFSGSHDEYVSWRQAASDAYEVFKRYDGSEAHYEAVVIIKNKICGPARA
LLTSHNTVLNFDAILARLDCTYADKTSLRVLRQNLEMVRQGDSDLMAYYDEVERKLTLVTNKIVMSHNMDTAAILNKEVR
DDALHAFIAGLKRPLKTLVLPAQPKDLPSALALAREAENSIERSAFAASYAKAIEDKSHFNEGNRRNNKGQGKQWRGEDK
NPHFVPKQNQSKPHEDNHWPKRRDPESLDHNTVQPMEVDPSTAKFRQGTNWGKPQSNNNYKRQNSSQRQSGQRRQRVNNI
AQPQQELTDYDTKAEAEVATIEEDSDTAELNDLLHFLGSVPDCRSSSDSWLAEH
>Gypsy-8_HMM_gag#LTR/Gypsy 48-908  [Heliconius melpomene melpomene]
MSSESDSQKSATSRQRVRRCTPKVDHVSTDIFRVGVRIPPFWPEKPAIWFAQIEGQFSISRITDDTTKFYYVIGQLDNQY
AAEVEDIITAPPETDKYNKLKSELIKRLSVSKENKVKQLLMHEELGNRKPSQFLRHLRSLAGHSIPEEFLKTIWSSRLPS
SMQPIIASQSALSLDALADLADRIDDIASSVPNVASTSRTSDTVLDSMTKQIAELTRKVSELSATVNQRSRSRTRQPSRR
IGNSSSSRSRSSYRKYPTCWYHMKFGSKAKRCVRPCDYRSENTQGSQ
>Gypsy-8_CR#LTR/Gypsy 44-8752  [Chlamydomonas reinhardtii]
MSDEDGFPRRARPSAFHTDLQGLDYERITQHCERFDPQWHSVRDWLESVDELAEEFGWTESRKLQLASKRLGPTAKEWYR
SWKLANPMASSTWEGFCDALRERWGVSDRELHLALANCTQGPKETVREYADRYLGLVTQLRLDYNRDPTHMHNFMRGLHP
DIYDSVYDMEPHNLTAAIRKAIYASEKGKLSKADGRDTRGRSDSEERRVRFADRSPSNEPRHSNGSSTAPPRYSRPFGRD
DRRDSRDTRSDQGPRMANRGPNNSSAGRGGGGVEDLSTRMSRMQLLHRRTPSRTLLFQAARPLYSPYRDAYALGYESEDS
GGVMSPQGSTTAPVSYYTNAEAYTKRVGDFEPITLPRKRVPVPIPGPEPMEVDRLAPRRFTAGHADQRREREQRPAAAAP
ASSAAAPAAGDGQGPRAPAGLEARPTGRRPTPGRGRTQATTPAHAPTRARSPAADPAAPAARPPRTDPIPTGDAGEEEKR
VADEICAKINAYPIPLSRALRVNPANIYTKIGGRLIGLGRQHSRELPTPVAAAPPTRPPTRAPAAAPTTRSPKATAPGPP
GHPAAHAHRATAATLTPVVSGGEWDVVEAEVLLGKADGKFIRARAVVDTGASNTVIPRVTLRRLGRVEDIEPAEQTFTNA
DGVRSESGGLVRNLVIATGDMVSTVDAYVSDATSYVILLGSDFLAPIKADISYRKKMLEYTNDLGRRSALPIRYHFPPTP
MACMVGRRARVVSDPPSEGEEAAAPAPPAPATRSASRPRPSPFALCQVPGYVVPGPSPVLPPVPPPLTGAETLELAGILD
SMLSHASPTAETARSAGARRVCMHRVLDTMDNGSPRASSLSSHPREDWPLDMEAELDALVAGRPMEDTSIDEQRWQDIQD
GRAPLPLSQPRSPDRRAPNPSGGTNAGPLTEQANPLQYPPGDPVGSPDGPEEAQRLLTELAAGQGSPEKVARVARILHWT
ASRELQVLQAAAFLAGARELARESSTDSHTDDTWWEDLPLGPSPRSVSSTVTTELDPNPSANTKEEEGATEEDEEGATRP
NDPCKPPPACGYDPEGDAGGAAPPSRAFLTRQGQESGVTWDDCEDPFLPPLDPLSMPGDSTPDDASAPTFHADYVSDTES
DGPPSLMDASDSGSDEESRGEEPAFPRRASHYPRFLVSYSAYRGQNPHEPGHSRVCVALGRQDGFLSDVASGSTLSAGYE
APLLDSDSGSGPPSPVTSAHFASPAPSGAKLDASWEDDDCCSPRSQSWAAPRTPIYYASGTPQTPRTSLPTLADVLLQRP
TKEEVLRLSPTQHLLAAREYGQRVRDTQGELPADDERRQLLLATLSPDLTPEHSTALAKVLLDNYDVFAASNQDLSVTSW
LEASIDTGDAAPVCTNPYRLSKGERDALEAEVQKMLASGVIQPSSSEWCSPMVMVKKRPAGSDKAGGGAADAPPVPPQWR
ACIDLRAVNDLTKPLRFPMPHVQTMIDTVAPPMGEKRIYSTVDLIAGFWQVPVRQEDRCKLAFQAPSGLYEFTVLPMGAR
QSPALFQRLLSLVLRPILFYGPGESTPGKCCALFIDDICVASKDPVQHAEDLQNMFDCLRLANLKMSIKKCHFATTEIEF
LGHAISGATGQYTLAPRNAEAIRNYPKLKTVRQIKAFLGLANYYRSMVPNFALISRPLYDCLGKLGYQWGPEQQAAFEQL
KTALTTEPVLRAADVTRPFRLATDFSCNAVGACLSQLDDDSREYAVSYASKRLTGAETRWSSTDGEAYAAVWAVKKYHEY
LASARFQLITDNTALTYIMRAKDLTGKLARYALRLQGYDMEIVHRPGTKHGNVDGLSRLGHLAEDGGREDTDDVEGSGGD
QGLSTELLTSSASPGPLAGYVATAHRQPNGRMSTFLAGRSLSQEFEQVWSLPAARSHREVRIFMRRATSGQVGEQKAAGR
AGPSQPAAEADRAAAGPSTAREDGAAEVPGGEGAGPGSPAAAGSAPPRAEPQAGHPASPLQRLLAMCRSPNPLSPGKRSR
NAPPQPAPQTTSLRSPSGEPLRRRRLPQPPAHLQDYTEQGESEEGESPKCARCQQGKPEWNMLLCDFPGCSSAYHTTCLR
PPLRRVPEGNWLCPEHATGGNPNAGKQHGDDLGVAAGTGTGGISGGAGDAAPAPANRRLVRVVRRLNLPSGAPNPGPVGA
PALTTPPVAAIPAATTAGPGHQEAVARAAATASLAATNMPTAMATALTATAAPSGFTNFPTDELVRAYVGEGDSSEDEEE
WEQEDGTATEGEGEVSEDVLAVNGVPNYSAGEADVWHDAGLLHYLQYRSFVARPDLSGTDFYKECARISRKARRYRWENE
EEWEQEDGTATEGEGEVSEDVLAVNGVPNYSAGEADVWHDAGLLHYLQYRSFVARPDLSGTDFYKECARISRKARRYRWE
NGQLYKRATRNRPEVRILRHSERQAALAEVHNLAHPGVRATFDLCRSRFWWKGMGHDCRVFVEHCRQCHPTQHVLVRHQP
LHPLPIVQVFHRINVDLSGPHALTPRGNRYIAVAIDAFSKYPVVGALPNKESATTARWLWESVLCHWGSVAVVMTDQGTE
WQGEFASLLARERVRHVKSGPRCPAQNGQVERFMGIMRSSLVRLCQEGVEANWDLYIHQVALSYRAARQRSTGCSPALLL
YGKELALAQQKPPLAQQTADPGEEWDSEGEGAEAVADERRQAAGVRKELLDAAADGARGNMEKAQTRMVRDHARRTHVNV
MPKPRPGGEGAYGSPDDTPADGQAQGQPATAATTRRASGSDSDNTKTPSPPPSAVLSRGGAGSAAPGGRGRGRGRGAGSR
GRGDRTTTQQPAAPKPALPTNSHDSAPEDDPALMHLPCLEKGTLVYRQRPSRSKLQSTREGPYRWLLWNRTGTMALVEDD
QSTRFTIPVAQLLVPRGTMVPAR
>Gypsy65_DR_gag#LTR/Gypsy 276-1415 [Danio rerio]
MDAERDMDNADAMAEDIEGAGAAAPGVDAEGGNPISELQSQILELGRRHDQVMSALSNMTNVHTRSYVYIPREKQIVPFS
GDLGKDCQNVDEFIEELERVIRVRGLNSEDQVDFILSHLRGSALDEVKLCMGGEDKSAEDMFSYLRAAFREKLSTSQLLH
TFYARKQLDSEDFRDFSHALSLMLNAALQQAPQCVPNVQRALRDQFIEGVRDLALRRELRKVVRERPDATLFEVREEALL
WCSEERPRSTNVARNRNLVSVKESAENAQMTATVTNDLTLALQDVIKVITQQGKAIGELTNAVRDLTIQRSDSALEKSNK
PKFKPRYTRGGQPICLRCESVGHIARHCTGQRSQENPVPTTSESLIAGNGAPPLRRAEQ
>Gypsy60_AG#LTR/Gypsy 216-4614 via tfasty with Gypsy56_AG, 1 frameshift. [Anopheles genus]
MNSPGDQPPSEEQRRASQNWYSVPGAASMPQQPQQPSLVAVPPNLQSAMPSAYQNPAPSQNFVEGSSHQAASSHQATSSH
QAASSEQMMQLIILMQKQISQLTLMQNNSATAKPPENVLTSAPFAEQVLDSLSHHIKEFHYEEEAKMTFASWFARYEDLF
ERDASRLDDSAKVRLLIRKLGAAEYERYANFILPKSCRDFSFSETIKKLSSLFGVKESLLHRRYKCLNLMKRRSEDYLAY
SCRVNRACVDFEIGKLTEEQFKCLIYVCGLRDEEDVEIRTRLLGKIDDRNDTTLESLTADCQRILNLKKDSAMIEKAATE
QVFAVQKKTDEPKFSERQNFQSRKHEYKRPQTLPGRNCWLCGKNHWARDCPFKSNVCRVCKKKGHRDGYCPKPKRYSDSP
TYRNKFSSRVVSVNTTNVQQRRKYINIFINNVSTRLQFDTGSDITIINRNVWQRLGKPELKRTVSARTASGSGLFLLGEF
EANVTIGSVTHVATLRVAQADILLLGTDLIDLFALGSTPMDAFCRHISSEDYSKTVERRFQEVFNGMGLCTKASVKLQLK
ENVRPVFCPKRPVAYAVQELVDKELDRLEQMSIISPTDYSEWAAPIVVVRKANGSIRLCGDYSTGLNDALQQHEYPLPLP
EDIFARLSQCKIFSKIDLSDAFLQVEIDPAYRSLLTINTHRGLFTYNRLPPGIKIAPAAFQQLIDTMLAGVKGVSCYMDD
IIVGGATEQEHEANLMAVLKRIQEYGFSIRSEKCAFKVQQLRYLGYIIDTHGLRPDPAKIDVIKRLPEPTDVSGVRSFLG
AINYYARFVPNMRELRYPLDNLLKTNAQFRWTADCKRAFERFKSLLSSNLLLTHYDPRHKIIVSADASSIGIGATISHMF
PNGTIRVVQHASRALTKTEEGYSQIDREGLAIIFAVTKFHKMIFGRRFQLQTDHRPLLRIFGSKKGIPVYTANRLQRFAL
TLLSYDFGIEYVRTESFGNADVLSRLINKHDKPDEDCVIASVALEMDVKSIATSALVTFPLSFREVARETNRDPIARKLH
YYIKNGWPRNIALGADSSRYHSRKEDYSTVEGCIFVGERVLIPEKLRKQCLSQLHRGHPGIQRMKAIARSYVFWPSLNED
IIDLVSNCHSCALAAKSPAHADPLPWPKTTTPWERVHVDYAGPIDGDYFLVVVDAHTKWPEIIRTASITARITVSILRGL
FARFGMPTTLVSDNGTQFTSGEFSEFCLSNGVHHITSAPFHPQSNGQAERFVDTFKRSLTKIRVGGAPLQEALDLFLQTY
RTTPNPQLEQNKTPAEVMFGRPIRTCFDLLRPPRKIQHDFREGNERSFERDDLVYAKAYSRNNWHWVPGRVIRKRGNVTY
EVLTGHRSVIRHINQLKRRGPFSSPGPMTERFNPLPLDVLLDSWSIPVTPSVLPDVYPTQLAPPVATPTEPPSLPPHRSI
PQHQRSPRRSSRSRRAPRRFDPYLRY
>Gypsy66_AG#LTR/Gypsy 95-4324 [Anopheles genus]
MTTLDPSSMAALSHMIAEALKTAIGSAAGEARQDATPSTSRAPSFSHPAYRTTEGTVCDYFDRMEWALQLNGIPTEKYAD
YARVHMGAELNNALKFLIAPKLPQEILYKDLRKTLETHFDKQRNKFVESIKFRQITQQQGESIAQFTLRLKQGAAHCDYG
EFLDRMLIEQLLHGLMERGICDEIIAKNPVTFKDACEIASTLEATHNTAQEVNAGMPSVESTNKLGYEQPKTKKTPASRA
TSKPSKSTRRETSQGKPKQGTTNPGMCNGCGGNHLRNQCRFRDARCNTCNKKGHISKVCRSRKTNHDEDSINPVNTRPEA
SIDYVQTLNALQTTSPSGKKMVEVTIDGHPLHMELDTGAPCGIISEAKLKTIKKQFRLLPSERQFSSYSGHSITCLGRLP
VNVAMGSANRKLNVYVVSGTSEPLFGREWIAQFSDQIDINSMFAPNVSVQSVTDTEPSAIQKSKLNDLLENFREVFSDTP
GKLIGPPAKVHLKPGATPIFSKAREVPLSLRERYAAEINKKIAAGFYERVDYSEWASPTHIVVKKNGNIRITGNYKPTVN
PRMIVDEHPIPKVEDIFNKLKGAAFFCHLDLTDAYTHLPIDDDFKHVLTLNTVTHGLIRPTRAVYGAANIPAIWQRRMES
VLQDLNNVVNFYDDIIVAAANFDNLLETLKGTLQKLKDNGLRLNRAKCVFAVPSLECLGHKIDRHGLHKSDKHIAAIRDA
PRPNTPEELQLFLGKATYYSSFIPNLSTRARSLRDLLTAQTFEWNDVADEAYQDIKEALISPQVLVQYDPTLPVILATDA
SKTGLGAVLSHRLSDGTERPIAYASCTMSKTKQKYPQIDKEALAIVWAVKKFFHYLYARKFTLVTDHKPLTQILHPEKSL
PTLCISRMANYADYLAHFNFDVVFKPTNLNTNADYCSRIPNNSNVNQFKDEGRSSGDDFEQFAHVQIEQLPVRAEHIARE
TRKDPHLGKILQHLEQGQNLGQYGYKAPESKYTIAANCLLFEHRVVIPSTLRQAILNDLHVAHFGIVRMKALARSYVYWP
GIDADIEKTAKECHACARYGPTPPRFDSHHWEYPSAPWERIHIDFAGPVCNTMLLIVVDAFSKWVEVKPTNTITSAATIK
ILDELFATYGVPITVVSDNGTQFTAKEFKEFLQKSGVKYHKLTAPYHPATNGQAERYVQTVKNGLKAMGTTSANLTRNLN
TFLQHFRKTPHAETKDSPAKLFLGRNIRTRLDLVRPQAVHASVSERQKAQFRPAFRTLPPGQSVYVLSGNTRMDKWIPAT
IFARLGDLHYDVLYNGQHLKRHIDQIRRFEMKTNDEEESSSAAISPPVATTTTSTPLAVSSSTATRRLRFYGHAAPSAPA
EPEQVVTADDDLEDETFSTPPSSPQPPGNVSTTLRRSTRLRQPPKKFSP
>Gypsy89_DR_pol#LTR/Gypsy 823-4356 [Danio rerio]
KNPMNEGEVLHLLWEAGSFPGNMSRVVGKSQISFRCRGPGARVGVIPCPIFSGLTIQAVISLQQPHEVEIFIDSGAAGNF
MDLKCAQDLSCDLLTLQNPLKVSAVDGNPLGLGHIHQCTTALHVRIGDHEENLQFHIIHSPKIPIILGHPWLVTHNPLID
WSKGVIVSWRCKGSSLNTMFGQSTKDSTLCHCPLPLETQPEPPRHTKAIPLDIMTIPKPQIVPKSLNTPPEISRVPPEYS
DLAEVFSKTRAASLPPHRPYDCPIDLLPGTCPPRGKLYSLSGPERAAMEKYVHESLDSGFIRPSTSPAGAGFFFVGKKDG
SLRPCIDYRGLNSITVKNRYPLPLMTTAFKILQGATIFTKLDLRSAYHLVRIRQGDEWKTAFNTPTGHYEYQVMPFGLAN
APAVFQSFIYDVLREMLNIFVFVYLDDILIFSHNPEEHVIHVRKVLIELLKHGLFVKLEKSEFHVSSVSFLGFIVSKGSL
QIDPSKTRAVLDWPQPTSIKEVQRFLGFANFYRRFIRNFSSIAEPLTSLTKKANTPFTWNDKASTAFNTLKHRFTSAPIL
TLPDPELPFILEVYASDIGVGAVLSQRSKADNKLHPCAFYSHRLTPTQANYDIGNRELLAIKLALEEWRHWLEGASHHFL
IWTDHQNLTYIQNAKRLNARQARWSLFFNRFKFTLSFRPGSKNIKPDALSRQFEPSEKPCCPEPIVPGSRIVAPILWDLE
SSIRKAHQHHPDPGNGPSGSLFVPNSMRSDVLQWVHFSSPSGHPGINRTYKLILRKFWWPMMRKDVQEFVSSCPTCAQSK
EPRTRPQGLLQPLSIPSRPWSHISLDFITGLPPSQGNTVILVVVDRFSKMCHLLPLPKLPTANQTAELLMRHVFKMHGFP
QDIVSDRGPQFSSRFWKAFGRLIGSSISLSSGYHPQSNGQTERVNQEVEKTLRCLAGDNHSSWTSHLVWVEFAHNTLHHS
SINMSPFECVYGFPPLLFPGQEPQVEVPAATRFIHRCLRSWQKARTSLRKAVHNQQKQANRHRRAGPSLRTGQRVWLSTR
NLPLRVESRKLAPRYVGPFKIIKKINPVAYRLLLPSALKIHPTFHVSQLKPVLCSTLHPNRAPTPALRIVDGHPAFTVRR
LLKCRQVRGRTQYLVDWDGFGLEERTWASAKDILDPSLIKEFHQAQREHKGNVRRRS
>Gypsy70_AG_gag#LTR/Gypsy 697-1641 [Anopheles genus]
MQHSPERQPAPQAATHDAPPVNTERTGTSQATNAMTAAETASDPRVEAAQAVRLSVPEMDLHNLPAYFCALEHWFAATGI
TAKMDHKRYHVLMAQIPLRVYNEIQPIIENVPATERYNYIKRNILQHFGESQRSRLHRLLYGMDLGDRKPSQLLAEMHRA
SSDTLASTLLTDLWINKLPPHVQSAVVAAPGSVTEKAAVADTMVECLSASNNASVHHAVAGVRTTPNDFEQRISRQVDEL
TQQLNDFITECRNRDQRQSRPRPRPPVSSRVGTEPSEGECYYHRRYGTAARTCRQPCSFPAPVSQRVGQPSSSA
>Gypsy54_AG_pol#LTR/Gypsy 1558-5109 [Anopheles genus]
IFTRAFSIYLPKASISKHAYKKLIQGTLVDFNTKTSVPLKQNNMFSVGLQTETCKETKQTLHSTPIDECESLNIECTRDG
RLMAKILSQNVNKKMVNFLIDSGACFNALSLDIAKELGLDFMNHNDKVTLSSFDGSLSNTEGSMFLKLHIGNFVYPIKFY
ILEKLSVPAIIGADFLKKYTMCIGSNFQIIYLKKPLNTEPLNTADENIKKNMDELEQIDGTLFENSDNTQKENFELLPHI
EKQLADCDVVKTSKDRELVGSERYKELMDKINLNHLNNATKINTKKIIADFSDIFYLPGDKLTYTQAATHEIETSSNIPI
FKRQYRFPTALNMIMEEQIEEMLKQHIIRPSKSPWNAPVMCIPKKSENDQKKYRIVVDFRALNIITKPFIYPIPRIDDIM
DNIGNSKIFSTIDLKSGFFQIPIAPKDAEKTAFSTSKGHYEFLRMPMGLKNSPATFQKLMNTVLYTIQPIKAFVYLDDIV
VFGDTVEEHNNTLTKVLEALKCHNLKIEPAKCKLLHTEITYLGHTINEKGIKPTQLNVKAILNMQTPKNLKEVRSFLGTI
NFYGKFIPNVSDIRKPLHELLKKNVKFIWNERCDEAFTKLKSLLISEPLLVRPDFGDVFVITTDASDYALGAVLTNEKTI
ERPIAYASRTLVGAEKRYHPIEKELLAIVWAVDHFKHYIYGQKFIIYSDHRPLVSIWRLKENSPVLSRLRLRLQGLECEI
RYKKGKENIVADFLSRLPEVKENEHDEEVNNTVAVVTRGQTKKKVVLELNNDNGEERIEASKSTTLQDDHWENLMKIDLE
KETSEKEAKRKEQLEKVKQTVVTKFQNYNPFSDKIEIERSEINTVLHEFHDAPLGGHVGVRRMKKRIKELFFWKGMDRDI
EGHVKGCKSCQLNKIGRFNKIPMQITTTSKQAFEKMFMDIVVLPESERGNKYGLVIQDDLSRYLIVTALENQEATTVAKA
FVEEVICRYGAPVEIVTDQGTNFMSQIMKETCKILKIKKINTSAYHPQANLVERANRELKIYLRQFVGKNYQQWDSVLPY
FAMEYNTSINSSTGFTPYELVFGRKARLPTSIYKEKNRKKLYSDFCEELITKLTEIHSIARNNLINSKEKRKEKYDRNAI
DWQPMWGEMVLVRNNQTGVGQKLQGIWKGPYEVVGIPSEQTCEIRNGRKIEKVHNNRLKKFNE
>Gypsy43_DR#LTR/Gypsy 141-4664 [Danio rerio]
MEAEVKAFIDSPSLEQLDRFRKKDLLQVAEIYKISVSSGAAKAEIKAELLSELTSQGVFSEELEAAASPAADYDVNVALK
LKELEFKIKQQEYETHLLRIRELELRQEAREVQTAESSRFDPSRYMKLVPQFRESEVDAYFIAFERVAGKLGWPKEMWAI
MLQSSFVGKAQEVCSALSMQDSLKYDVVKAAVLKAYELVPEAYRQKFRGHIKKTQQTFLEFARDKKTMLEKWCTASEVTT
FEGLQELILLEDFKNGLPENMVLYLNEQKVTTLSKAATLADEYVLTHRAVIPAARPHRNFKVDSEKDFTNTCPVKPETAR
TRAPAGGVNSRTEKRLCFYCLDPNHFIAECKAWKLKNASGRTKSVAHAVIEPRMMKAANTGLHNDVFKPFLLEGWVSTSP
GETEKAVSILRDTGAAHSFIREGILHLSERTYTGSDVLIRGIELGCVRIPVHSVFLKSALVTGAVKVGVCAQFPVEGVDF
ILGNDLAGGSVFPCPIVSDFPDNNIAEVTDTSKFFPACAITRSQSRKFEDTVDLSDSFLLRSDPTEFVLSVDDKVVNDNE
IKLDNQIIKIGRKQLSEAQKSDLSLSYCVDSAVQTESELDGVRIGYFWDGDILMRKWTSASVVDPDTPPTYQIVLPACYR
SAVLKLAHDHVMAGHFGVNKTFSRITKYFFWPSLRSSVGNYCRSCHACQVAGKPNQVVRPAPLHPIPVMGEPFERLILDC
VGPLPKSKQGYQYILTLMCAATRFPEAVPLRNIKTQSIVKELIKFCSLFGLPRVIQTDRGTNFMSTQFKRALEAISVSHQ
VSSAYHPQSQGALERFHQTLKTMLRTHCVDADKDWAESLPFLMFAVRETVQDSLGYSPAELVYGHVFRSPLKLLNEQLLA
SESSTVPVTEYVDSLRKRLSRSCELAKIHLTNSQASMKEHYDKRSVTRSFEPGDLVLALLPVPGSALQTKFEGPYVIKRK
INDTNYVIKTPDRRKKIKMCHINMLKLYHSRNPSEVKGKSAVAVAVPADSKESDMDVEICDSVCVGSLQNSVILKDLNSR
LSYLGDGQKDSVINLIHSFPEIFTDVPSRTNVLSHDIDVGSASPIKQHPYRVNPFKRKIMKTEVEYMLAHGLAEPSQSAW
SSPCLLVPKSDASFRFCTDFRKVNAVTKPDCFPLPRMDDCIDKIGPAKFVTKLDLLKGYWQISLSARAAEISAFVTPDFF
GQYSVMAFGMRNAPSTFQRLMNIVLRDIRNCDSYLDDIVVYSSTWEEHIETLREVFSRLKAASLTVNLAKCEFAKAYVTY
LGKRVGQGQVSPVNAKVEAIMNFPKPSNKRELRRFLGIAGYYRGFCRNFASLVAPLTDLLRPSNVFRWSPECELSFNGVK
VLLSNAPVLTAPNFERPFQLEVDASAVGAGAVLLQSAETGIVKPVCYFSKKFNRNQCNYSTIEKEALALLLALKHFEVYL
GGSSFPIKVYTDHNPLVFLNRMFNANQRLMRWALLLQEFNLEIVYKRGTENVIADALSRAPGVESSV
>Gypsy43_AG_pol#LTR/Gypsy 1585-5037 [Anopheles genus]
YFGKFLGSCRNNFTDLDFLPYITGTHPKTSQRFKLLLDSGANKNILKPGIIQSLQPVNTVIKNASGCHNVSQKGSINLLG
PELPNQMYYEYDFHKFFDGIIGSQYLARCNSIINYSNETVTIAGKIIPFVKYFPTNKFFHHIVSIDTLENGDWFVPCHQL
LCNNLIIEPGLYKSENNKSIVNIISQSHIAPTITTSFHLNVNNFETINPIPLKVDEPLNKKAVEILIRSDHLTPYEKDNL
FDVILNNQQVLLKRNEKLSSTTVVKHKIITKDDEPTYSKTYRFPNHFKKDVEEQILEMLEDGVIIPSNSPYSSPIWVVPK
KPDASQKRKIRVVIDFRKLNEKTINDKYPIPQIEEILDSLGKSTYFSTLDLKSGFHQIEMDPAHREKTAFSTSQGHFEFT
RMPFGLKNAPATFQRAMNHVLRGYIGSICFVYLDDIIIIGNNLTSHLENLDKVLKRLAACNLKIQVNKCEFLKRETEFLG
HLITQDGIRPNPDKIKKILDWSLPMNQKEIKQFLGLTGYYRKFVKDYARLTRPLSKCLKQGAKVAYDEEDYKKAFEELKH
IIASDQVLAYPDFELPFILTTDASNFALGAVLSQVQDNCERPIAFSSRTLNSTESNYPATEKEALAIIWAVKKFKPYLYG
KKFTLITDHKPLTFIKTSFKNSKILNWRLELENFDYEVKYKEGKTNVVADALSRRTDPDKSIRDINASSISDSPRSGTNR
SSETIHSGDISGDYFVHYTTRPVNLYRNQLIFKLGDTNAIVKETPFVNFQRTVITQNNFDSSNVSWFLSMYHNGKQTAIF
AAENLMQTIQETFSSHNFTKGHFVVTPNMVEDVTSIERQNFLVTSEHDRAHRGICEVEYQLRRSYFFPCMLKMIRSYVNS
CEICSSHKYERKPYNIKISPRPITHKPLDRVHMDIYIINKCSFLSIIDSFTKHLQMMYLKNKNIVQVQKKLATYFSIIGL
PKEIITDHETTFMSVQLKSFLSSLGVLLQYASCSESNGQIEKTHCTITEIINTNKYKYEGADTRSLTKIAVTLYNNSVHT
ATKFTPNELLFNNSNSVNPPEISGKAQILFATAYKNMTKAAKRQTNNNDSKCAPPTLEEREAVFIMPNIRTKMQPRATKL
IVRNVLDKTFENARGVKRHKQKIKRLKKYN
>Gypsy44_AG_gag#LTR/Gypsy 385-1686 [Anopheles genus]
MFNGSQSFVQPAPNILELGKVPDFVRDLRNFDGQPNELNNWIDDVESIMNLCERCRVGETSLMYELIQKTIRRKICGQAA
DVLNSNNITSKWSEIKETLLLYYCDKRDLKTLDFELTTVKRGKSEPLNSYYGRVNELLASLVTQVQTQDSYKNNASVHID
FFREKALDAFIRGLDKPLSILLKTASPTSLAKAYQFCLEYENMDCRSYISGNRMNNTSIPIPKPKELSVPFLPVTTPRGN
FQVQKPPVPLPRRQPFNNHYNPNQIGNTNTNRSHQMRRDLPVPMEVDESIRSRYTSANPIAYNNHSTHTYSNAIHNPNTS
NNFVQYSDSNSTNEFYQPTNTIPHQYVPNPTQHTNAHYNQFTNTYPNTLYNQYTNSSLSPSPSNFNQQIHPLEREARITH
TNEMTYLPNYQAPGKDINTQEQPNHFLGMNNVW
>Gypsy49_DR#LTR/Gypsy 737-5512 [Danio rerio]
MIRKKKDTLIATLKRSLVERGVLEVRTAVLCESSVFSSCDIDVESELKFPEMSIQEKQLYLDAEKLRADREGRAMKERET
EREFEARKLEQQLSVRKLELELEREREERAFQLKKLELELAAKRAETPRADVHPVPEQSSALVFDVHRNMRLVPPFSEKE
VEKYFDHFERVALSLKWPKQFWTLLLQCVFTGKAQDIYSALTLEQSGEYETVKTAVLHAYELVPEAYRQKFRNLIKTENC
TFVEFAREKESLFERWCTSMKVETKEQLRELLLLEEFKHCVPSAVATYLNEHKVSKLADAAIMADEFVLTHQGTFSSASF
RSDMNKFRSCQVKQKPAVVGQNIRAPVVGNIGKTTVSRDLICFYCKKSGHKISECPVLKKKEKFSKPVSLVAPSTVDDTF
IESAGHLSHSCGALFDQKVNDFVDYTPFITEGAVSLLGSEEMVPVRILRDTGSAQSFLLEGVLPLSSETATGTCVLVRGF
EMGFVDVPLHRIHLSSTIISGDVVVGVRSALPVPGITFILGNDLAGGNVWGESKVTALPIVISAPSKSDVEKSNIFSNLF
PACAVTRSMAKQLPENQATDVSLGNTFFSTVDSGEFTCDLPESPEKDKNICSSLSPDLEEITNSPQSLDSDATEVLHTAS
SDVDKYPLTSLLQVPREELIHAQQLDDTLKTVVSQAGSNMGDLSSYFFEDGLLCRRVAMFDDNLKSRTQIVVPLAFRESV
MQLAHQGLAGHTGVRKTYDRIMRQFYWPGVKRDVARFIRSCHTCQLTGKPNQKVPTAPLQPIPVTSNPFDHLIIDCVGPL
PRSRAGHHYLLTIMCQTTRYPAAYPLRSITTKSILKALTNFMSIFGIPKVIQSDQGSNFMSKQFAKALRQLRVKHNISSA
YHPQSQGALERFHQTLKSLLRSYCVELDGDWEEGLPWLLLAIREVTQESIGFSPNELVFGHEIRGPTTVLADVWHSSKPP
DNLIDYVSGFRRRLYEMQAVAKKKLGKSQKKMQQHFDKKAKFRSFQTGDQVLALLSLPTNPFQAKFTGPYSVAKRLSDNN
YLLNTPERRKKVQVCHINLLKPFVAPVCSASVSVAPLCDHSGLEHLSVFPSLSCSMGEDLSEKNEDGSLLSQGKIDGRLN
NSQILSDLSGHLSYLTEDERNDIIELVMSFPSLFLDVPGRTTVIEHDIDVGNSCPIKQNAYRVNPIKRELLKREVNYLLA
HNLAEPSFSSWSSPCVLVNKPDGSYRFCTDYRRLNSFTKPDCFPLPRIDDCVDHVGSAKYVSKFDLLKGYWQVPLTARAR
ELSAFVTPDSFLQYTVMPFGVRNAPATFQRLVNRVLHGMSGCEAYLDDVVLYSSTWSEHLDQIKDLFSRLAEANLTINLA
KSEFGKATVTYLGKIVGNGYVKPIGAKVEAICNFPTPSNRRELRRFLGMIGYYRSFCKNFASIVSPLTDLLSPKIEYQWS
ETCQQAFENCKALLASSPVLTAPNFEKSFRLAVDASGCGAGAVLLQEDLNQVEHPVSYFSKKFNRHQQVYSTIEKEALAL
VLAVQHFEVYLGSIAAPIVVYTDHNPLVFLNRMKNRNQRIMRWSLILQPFHLEIKHVRGKDNVIADTLSRV
>Gypsy45_AG_gag#LTR/Gypsy 278-1333 [Anopheles genus]
MTTETNVPNIYELGKVPDFVKDLREFDGRHTELMNWIADVEEILTLCVSCKISQLLGTLVQRTIRRKIVGEAAEVLNTNN
ISTDWKEIKEVLLLHYGDKRDLFTLDFELSTMRKSNGESLTAYYGRVKETLALIIAHVQTNEKYREHAPIHTQFFNEKAL
HSFIRGLDKPLSFILKTSAPANLSKAYQLCQEYYSTDLRFARMFEPRGQADFNQKPVPKPRGSFNPMPYPRASTSFVPST
ASHSVPNTTHTIKSNRYQTPTPMEVDGSIRYDNGSHSRRFTQQTYPRVPSTQVKDFKRQANTVHDDTDRKINNTGLESDY
QHQQSEYEAGHDHNLDGSLYQNHFLEWDPKW
>Gypsy90_DR#LTR/Gypsy 145-4227 [Danio rerio]
MDELLQRLTEVSIRQQQVAEHLAARQDQTEQELFALRLAAAQRVPLPDPRARATQLLPKLTPHDDIESYLQMFETTATNE
GWNVDDWPQVLAPLLTGDAQRTYFSLPDSAATTYQDLKREILAHMGLSSTCAAQQFFEWTYKPHLPVRAQAAGLTRLARH
WLLAEDPTPSQVAERVVIDKLLRALPRSHRRVVGMRNPSTTLELIEAIELADATLHREGGERAPPFPRRVFQERRAPEGP
QRPVSRSTVPSPREEPMPTEVSTPPSRTWLAGCIVHRDLPEGAPEADVKVNGKPYRALLDSGSAVSLVHARILAPRTGSK
TFLPITCVHGDTRQVPARHVTISAGPDTWPVEVGVVKDLPVPVLLGRDWPGLERLLAAASQPASPRGSRHRKKPNRRPRQ
RPVLLASDSGRDGESPSHNTNLFYDVFQQVTGGGSFAKEQQGDDRLKHCWTQVRVIEGKESQPGPHPLPYFAVQNGLLYW
VAQRRGEEKLLLVVPRSKTEAILELAHSHPMAGHLGVANTVQRIRDRFHWPGLEADVKWFCQACPTCQRTSPRTPPPSPL
IPLPIIEVPFERIGMDLVGPLPKSARGHEHILVIVDYATRYPEAVPLRKATAKAIAQELFLLSSRVGIPAEILTDQGTPF
MSRLMADLCRLLKVKQLRTTVYHPQTDGLVERFNQTLKQMLRRVAAEDKRDWDYMLPYILFGIREVPQASTGFTPFELLF
GRQPRGLLDVAKEACEQQPAAHRSVVEHVKQMREKIDRVMPLVREHLITAQKAQQRHYNRAAQAREFQLGDRVMVLIPNA
ACKFLATWQGPYTVLEKIGPVTYRVQQPGKRKADQLYHINLLKKWIGTRVQLAALATSEPVVVDINPHLSAAQKGDLRHL
IGQFPDVFSYLPGQTSLLQHDIRTPPGVIIRQRPYRVPEARRQAIEEEIKQMLKLGVIEPSSSPWSSPIVMVPKPDGTLR
FCNDFRRLNEVSEFDSYPMPRVDELLDRLGRARYISTIDLTKGYWQVPLSENAKPKTAFSTPSGHWQYRTLPFGLHGAPA
TFQRMMDIILRPHHAYAAAYLDDIVIHSETWEDHLDRLRRVLSELRRAGLTANPHKCHLALSEAKYLGFQVGRGLIQPQE
KKVEAVRIAPRLVSKTQVRAFLGLAGYYRCFIPNFSSLAAPLTDLTRKGQPEKVNWTPAAEEAFRSIKTALTSEPVLRAP
DFGCPFLLQTDASDTGLGAVLSQVQEGEEHPILYISRKLTPAERKYAAVEKEALAIKWAVLELRYYLLGHQFTLVTDHAP
LQWMARAKDTNARVTRWFLALQDFHFNVRHRAGTANANADGLSRIWAAFAGLSGVTPHPPLNSPLLSHIIHRTSTPLRGG
>Gypsy-2_DBp_gag#LTR/Gypsy 667-1944  [Drosophila bipectinata]
MSWEYREVKQEVDSDDSEEIGFYHTTTQLESPTMNPEMIQALITNAVNVALTAQEQRWRAEIESVRNQVSSLTVQAPQVE
VYERVTPDPTIECGVKLDIVKSLPTFSGSHDEYVSWRQAALDAYEVFKRYKGSETHYEAVVIIKNKICGNARSLLTSHNT
VLNFDAILARLDCTYADKTSLRVLRQNLEMVRQGDADLMTYYDEVERKLTLVTNKIVMSHTMDTATILNKEVRDDALHAF
IAGPAQPKDLPSALALAREAENSIERSAFAASYAKAIEDKAPFYEGNRRNNKGQGRQWKAEDKNPHFIPRQGQGKSHEDN
LFPKCEDSETMHQNKVQPMEVDPSTAKFRQETSWRKPQSNNNYKRQNSSQRQSGQRRQLVNNIATAETEVADFEEDVDTA
ELNDLLNFLGSAPDCRSSSDSWPVEH
>Gypsy-2_BG_pol#LTR/Gypsy 1725-5241 via tfasty with TCA3_pol, 1 frameshift. [Blumeria graminis]
RSEFVHYVAVDEQIPKAPLDRPLREGANQPHEVFRTRLCSSLDTFSTFLDYGSPASYISRKLAARLQPDSSRKPSTLSGI
GGSGPTIDEDVVVRFAWKLPKGWSLPYEVSVGVVDDNSFPGDLTLGKSVFHKIGLAFLEDGAVQLKSHPGTPILVPYKSK
TITFATEERVMSTSEEVIVQLDNVDAKYHDIIASWNEQFPGVFDPARRNTAEKATVMHRIDTGDSSPIRQAPRRYSPAQE
EAMREFCSTHIGSIIKKSKSSWCSQALLTPKKKADGTPKMKWNANNKKMEVVWRICCDFRRLNEVTKKHAHPLPNADSEI
ERAAGHRYYCFLDLLNGFWHILMHPEDREKTAFVTPFGIYEWLVMPFGLTNAPATFQAFVEEVLGPLREFLAGLLDDIAI
WGETIEELTERVKKVLERLQEYGLVLNVPKCRWFVTEGTFLGFKISVDGIKADPAKVEAIRGRPPPTTATEVRSFLNAAG
YLRRLIDHFSTKAGPLFALIGGVKNAKVKLTKAQYDAWKLIRDTITQTPVVVKYLYSLPAILESDASQTDAGCCLYQARL
SSNGKSVLHPVAYFSKRFTETQQRYSTQERELLAIVLALQHWRYWLEGANITVLTDHDSLKLLRTKSEQPPRIMRFIDII
EHYGCRILSRPGKTNVMADYLSRPSAFITLETVFDTAELENQKLESYDPIADPTDGQEDVILQDNNAISVPNDSVAEEVN
AKQPQDSSEPTIERLDHLNRTDLQTIFEHIAYGHELSTRLSYTWVKKHFMAHQDSLFRLKTVHSEHKEGAIMMLKVPEYE
DLMHEAVQTHQRLGHASVGAVHRDLSATYYHPEIMLAAHEATRTCRQCQLMQKPDPTLGHLTPIAPSPPLTRWAIDFTGP
VFQHTMLNAIEYATGWLVSFWTNSTSFASTVPLCKHINLQFGPPKEIVSDNAGAFQSAEAVEWHKINGTKIRPVTPLRPN
GNGKVEQANGKIKAIVIKLIMDQPGRPIQEYLDRAVYIYNRLKGPNGYSPYFLMYGTHPPQEQQTYHAYEREPTPEEEKQ
WSEELVRAQEANTARTDVASMKAVRDATRSYLQEKKGLIRTYTTGDWVLRVRQRTKKTEPFYDGPWAISSCYPNNTYTLI
SPGGVRLARRYNGTHLFPAYTRDGHPVRSLWYGSARLLEQDRRRIADAVGSL
>Gypsy-3_AMi#LTR/Gypsy 39-3996 via tfasty with Gypsy86_DR, 3 frameshifts. [Crocodylidae]
MEHLRIPEELKLSSNAAENWKKFKQSFTIYMTASGATEKEDPLKVAIFLNIAGPEALSLYNSLQLSEAEQKSYGTVIQKK
FEEYCIPKQNETFERYNFHMRQQKECETIEEFVKDLRLLSQTCNFGDLKESMIRDQIVLGIRDTSLRKRLLEDPELNLEK
AVRMCQAAEITNARLQKLEEKTEQAELDRITRLQKPKATHKQYRKEDLTMKQASGGQRELLEETMVSCRCCGGYHKPMQC
PAFGKRCNKCKRFNHFARVCRKEQDATHKKQQVHALCNEEEEEFLIGTMQEVHSSEDWTITLDTNGLMVTFKLDTGAQVN
VIPEYIIQKMKTKPVYYENKKVRLRAYNGNMIATKGVCALHVRHKGNIVKIQFVTVPGKLVPIIGLRTCKTLGLIKRMDA
IEGLESKNIEEEFYDVFQGIGKLSTEYKIELREPNTPTIHAPRNVPLVLREKLKKELDRLVNMDIIEKVEQPTAWVHSLV
IIEKKDGSLRLCLDPKQMNRYIKREHFPIPTREEVFGNVAEAKYFSTLDASSGFWQVPLEKNSTRLCTFNTPFGRYCFRR
LPFGLCSASEVFHRKVQQIFEGLDGTMVYIDDVLVWGNTMEEHDLRLRKALERARRAGLKLNKQKCKFRVKEITYLGEKL
SEKGVQIDPARVKAITNMPPPTDKEGVQRLLGMINFVGKYLPNLAEQTKHLRSLLQKNAQWIWEHEHEAEFKNLKEKIMK
APVLKYYDPKRPIKLSTDASKEGIGAALLQKHGDSWRPVAYASRALSKSECLYAQIEKESLALVYGCKKFHIFIYGKPVI
AETDHKPLVTIAKKGLSDMPPRLQRLFFQLQMYDLDIQYTPGKHLLIADTLSRAYDTTENDRIPDSDIVHVNLIKRVIPV
TDKMWALIAEATAQDTTLQKVITAICAGWPGKHIPSPYSQFKEELSVLDGILFKGSRLVVPAVLKKDMLNRIHEGHLGIE
KCKRRARGALYWPNINNDIEDAVKACTTCLKYRSAQRKEPMMVMEEPVAPWYQVGIDLFIHAGKNYVLVLDYYSHYPEIA
LLESTTANHVITRIKSIFARHGIPQIVRTDNGPQFNCLEFKEFANKYGFRHNTSSPKYPQSNGLVENGVQIVKKLLKKAT
DSHTDVYLSLLNYRATPMKHGLSPAEMLFNRKLKTRLPNLVDDAHQNEKQDVKTFKKFDKLKQKWYYDRGSRELPQLHNK
DMVLISDGRTWKQKALVSHQVAPRSYKVVTPEGQVLRRNRRHLQLVKGRKEAASRDSPKETELTSKQQETTEEIENDTEV
ETSEQGNQTRTEPIRIENAEKLRRSLRAKKPTQRLIETC
>Gypsy-5_BG#LTR/Gypsy 159-5134 1 frameshift. Gypsy-46_BG product near-identical [Blumeria graminis]
MDGNIQVEASYQAAQERFAENPLAGLSRQDLLELDQLFREMKTQGTELRSGGATRPRRRDAVLPKWNGAPLEFGFFISRL
ETRIEVDWAPYLDDRTICLDMIETLPDTAKPRVAEWFNKRKADGRFGWKELILHLKETFADKKALQVALEYINKMEQGES
QSLADFLLDFEYQIAQSGGDEAFTKLGRTMNLKSALNSKMRTALVGVKLPPPERYNDWVERVKEVALELEGLKNYGPNIA
TQLATRLAASKGGRGQIFYNRPAVNIEGVVYTDGTNGTLTGLGGSIKDEEEKIARVRAGNKPSRGFAHGIQGTDEDRQLP
RSSKRSHEESRRLIGEGVYLRCSQRGHKAKFCPKFRRVQTPRLGLNAAAATEGQREEKNFGKQKPLRKISLRGKDGTFPM
KRKYSEGQVSRPLLIDCLINSSFFVQAMIDTGCLCLSVVDEALVRRENMFVEQISPRSLRLADETKATKITRIARYKVDI
DGRQEQMWGYVMPNLAYPIILGKPWMERNEVTYSAGKKFLRIGHGDHELMVKTSGWVEKLASHDLQEGLMSTRLSNESEV
SYKELSEICTRELKDSPALINELVGAISMHDITKALEPKKQVSRDMVKDGLPEEVRHFTDLFVEDGSDGKNSLPPLRPGV
DTKVRLLKDQQGKEMGVPWGPLYGMSRDALLVLRKTLTELLDKNWIRASSSPGGAPVLFIKKPGGGLRFCVDYRALNAVS
ERDRYPLPLIRETMQMLSGAEWLTNVDVRSAFHRLRVAEGDEWKTAFRTRFGSFEWLVTPFGLAGAPSAFQRWINQVLGD
LLGDTCSAYVDDVVIFSTGDLEDHWRRVSQVLDRLNKAGLKLDPLKCEFAKKEIKYLGFIISVEEGIKVDPEKIRAIAAW
ESPTNVKGVRSFLGFANFYRGFIENFAKISAPLQDLTKKGTPFQWAGNQQESFEKLKALFITAPVLALWDGERKTILETD
ASGWATGGCLLQHQPDGQFKPVAYYSKKLAPAECNYDIHDKELLAIIRCLNEWRSELLGLKEPFVILTDHKNLKYFMSSK
KLSERQVRWSQLLSQFNFRLDFRAGKLSGRPDALSRRSQDVPKSEDDPRIKEREFTLLKDVMLDKETILVQHIQAAKSMG
KNQIPHGDQLFEEEELQTLWDVGMAKDKAMSEELYTAIWNNEPQFPSHLQLKVARAECELDMRGALCFRKRLWVPNWEPL
HTALIQKTHDSHATGNPGRNNTIAILSRTFFWPGMSQMVRRFCKNCDVCGRTRVWRSRRQGLLLPLPVPERFYSELSIDF
MTDLPVKSKGEPQYLMVITDRLLKSVTLEVMQTMNAEECAERFVVCHYRFHGFPHALTSDRGSNWVGDFWRHLCKMTRIE
QRLSTAFHPETDGATERMNQEVLAYLRAFISFSQVEWASMLPTAQLAINNRDSSATTLSPFFLEHGYHAEPVQLKSTEPR
EPLSTRAKRAEKFVDRIREAQEFAAAAMAAAQQIMEEQANRKRDPPPQFKVGNKVWLSLKNISTPQPKKKLAWVNAKYTV
GKVISPHVVELDVPSRIWPRFHVELLRKANDDPLPSQIQDDTQPPPLMIKDGDNTTLEQVVERILRAEKVRRGRGWVRRV
LVKWKGFAEPAWEDRADLENVEAMDHFEALYGKGDNVGENEGARQGRKNKRTVRRGRGV
>Gypsy-3_DPer_gag#LTR/Gypsy 996-2552 [Drosophila persimilis]
MSLDWSFDEIDQNDHSDIICCICVRQVEYRTQLLRTSCNHVFHLVCFNTRRGEKTVCPACNKPLQSSAPSLAEELAVAQA
SASNVESSQLRMRTRSQRVTAGPAANTENLPSVGPTEVGVPIMPVQSSEPANEASPGLAQMAQALTDAMGQIGLLSQAMT
QMTQTMEIGFQRLASPTVQPPNDQAAGSSQPSGENQTFEQLFQIPTRESVGAPINQANDSNVSVTPWGSQQIAGLRPDRI
GQIIAGWKVRFSGNSSMSVEDFIYRIEALTKQTLEGNLDLVARNAIYLFEASASEWFWRYHKSVPSVTWPQLSTALKTRF
RDGRTDLEIRTAIVQRKQKPHELFDTFYEAIVTLSDKLVNPMSEMSLLEVLKSNLLADIQHEILYIPILSVAQLRNIVRT
RERFLQSVAKPMGIAEPKRNPIRRQVHEIVVQTDKEGDEVDETEQLDIAAVTLSCWNCGCQGHRYQDCVGDRTVFCYGCG
KRDTYKPSCSRCNDPKNSSSRAQSTGARKPNSSKATNTI
>Gypsy-2_AMi#LTR/Gypsy 116-3505 Gypsy-3_Crp near-identical[Crocodylidae]
MLSPGPESQPQVVVQLQQAIQGLREQAARQQALLANAMESIHTRPAIQVGMCGYGARSGPEVGDEPPAVTVEVTMEGKKV
RAMLDSGSLQTMVRSNVLPAKEREIVDRVKVQCWCGDSLRVDRVRVRLQVGDRTRQMLVGVAEQLPYPVVLGCDWPELLG
EIARARPKEKVEGFAVETEQVPPEEEARQEVDVTALWEDEHFQLEQSREADFRYALQEHLAQRDGEVLRPELMKTTPRFE
VRNGLLYRIERGKPGGEEVIQLLVPRRYRRAVLKVAHELPMGGHLGRDKTEARIRARFFWPGLLREVARYCASCPVCQKA
DPRRPPKAPLIPMPLIEVPFERVAVDIVGPLPRSSTGNQYILVLLDYATRYPEAVPMRTISAPKVANELLKIFSRVGLPR
ELLTDQGTNFTSRVFEGVSKALGIKHLKTAVYHPQTDGLVERFNQTLKQMLKKFVAESPQDWDKMIPPLLFAVREAPQAS
TGFSPFELLYGRQPRGILDLIKEGWEEQQGKDQNLIQYVIQLRERLEAARSEVVGNLREAQQRQVRYYNRGARERKFEVG
DRVLVLLPDRESKLLARWQGPYEVIRQVGPLDYEVYQADKQKKKQVYHVNLLKKWEDRECMYLASHPDELELGPSLTEGS
GPGDVELASRLSEDQRGQAAELVREFGDVFQETPGEARGVVHRIKTPPGQVIRESWRRIPQRLQRQIKTEIEMMLEKGII
CRSHSDWRSPIVAVPKPDGKIRLCVDFRKVNAVAKFDAYPMPRVDELVENIGQARYISTLDLTKGYWQVPVAPEDQEKTA
FATPWGLFQFRRMPFGLHGAAATFQRLMDRVLAPHVGYAAAYIDDIIIYTEEWAEHLKALRAVVQDLRRAGLTANPKKCT
IGKEETQYLGFLVGSGKVRPLLSKVEALRRYQAPQSKKQVRAFLGLANYYRRFVPHFADLVVPLTEMTKAGAPAKVRWTP
EAEKAFQAVKEALCLQPLLYTPDFNKPFLVQTDASKAAVGAVLIQIEGEEERPIAYISRKLHPPERNYATIEKECLAIKW
AVETLRYYLLGRRFTLITDHAPLRWLQSMKTDNARLMRWALSLQPYCFEVKHRPGTKNVSADFFSRQYEEEEGLGGTERP
RPREKSGGVG
>Gypsy-1_DD_pol#LTR/Gypsy 1475-4288 Fragment (miss N terminal ~275 AA due to gap in consensus) via tfasty with Gypsy-22_DR, 2 frameshifts and 1 stopcodon. [Dictyostelium discoideum]
SQDVFTNTLTEPGAISGVEHQIKLTQKDASFQAYPVKFTNEQKDFLDEHIKELLKYKIIRESNSQVSSSVVLRPKPDGSM
RMCINYTKLNNITVKDRYPIPDINEIWNQIKGSHVYSKLDMISGYYQIRIREGDKYLTAFSVPQGLFEFNVMPFGLCNAP
AVFQRTIHKIFKEENRLTLQSFYDDILSHSKSVMDHTPHLEGIFKKMRDNKLLAKLSKCQFFQEEVKFLGHIIESNGVQI
DYDRLDPLMKLLDPKNVKELQRLIGTLNFFRKFVDNFASKIKPIYQLLRQDTIFEWNDAYKSICINIIERLKNNKIILVY
PDTxQLIQKPFKLETDASDIGVGATLCQDHGIISFYSRTIRDTEKNYSASEKECLSVVCALEEFHYIIGTQETLVVTDNS
AVSFLRNDLGKIRNKRFINWNVKLASYNITFKYRSGKENTFADALSSCPVEEVMSVISMGESVKLDSILDLKIAEEQRKD
KHLVPIFKYLRLIVNPTLFFKRPQIVXFXIVVPMSMQKEVLEKFHDCSLVGGHLGYQKTYSKLASRYYWNNMGMDVKEYI
NNCDICQKMKTSPFSKFSPELGTIIVEKPWDLVAVDFVGPMKVPSMSGHKYIIVFSDYVTKWVEAAATVDCTAETTAIHY
FKXIISRHGCPKRLLSDCGTSFLNKVISSVNELFKVKKVNTSPYHPQTDGLVERFNKTIVIMLKSFTQEVHTMWDLYLDS
CLFAYRISVHTSTGASPFSMLYGREATIPSDLGTLNPFNNSATTNDNYVGKLEETINKSLEIAKTKIQESQTKQKQYYDG
LKTRKNSISPGDYVLLKNQTVKEEELKKFRPSWIGPFKVVRILSNQTIQIQVPLGSNMSTTQSLRNCKRYFNKINKLNQL
PSFINQPSQVSMNELSFSRLVNPSIVVSSPPPSTSTPQHGQAVTQLPVVLPKSNRAGV
>Gypsy102_DR_pol#LTR/Gypsy 2082-6200 [Danio rerio]
RTTMIIGTLLLDLTISLMKTFSSSCQCLRVLSVGKGDTVPDKIGTVKLTQAVVLLPKHEHLVWGRLPSNVPMSPGSTVIV
EPTNSKAMPRDILVGRLVVPLWGDRWVPMTVMNPTNKVITLKRNSKMADVFPCIASEDFEIFQGLHITLVENKSDNSCNS
CAADHIDKNLLNLVLEEIDVNWSQISDDCKSQLTQLLADYQDIFSKHPLNCGEATGYVHRIRLTDNRPFRLPYRRVPPAH
YEKLRQVLTDMEEKRIIRKSSSEYASPLVMVWKKDGGLRICTDFRWLNARTMKDAHPLPHQADCLAALGGNCFFSTMDLT
SGFYNIPMSEEDKKYTAFTTPLGLHEYNRMPQGLCNSPASFMRMMLGIFGDLNFSKLLCYLDDLLVFAPSESEALSRLRT
VFDRLRENNLKLSPKKCHLLQSQVRFLGHIIDSGGVSVDPAKVEVITRMTAHDLMDNDGCTPSVKRIKSFLGMVFYYQHF
IPNCSSISKPLFGLTAGQKRRGKLSKERKFQGTYRKLTPADWTTECQVAFDKLKTALLECVMLAHPDFNEPFILSVDASL
DGLGAVLSQVPKGELQARPIAFASKTLSTSQRRYPAHRLEFMALKWSVCEEFSHWLKGHKFTIWTDNNPLTYILTKPKLD
AYEWRWVSKLAAYTFDLKHLPRKANVVADTLSHDPFVEPIGRRLLNEPYSYLMQEASGIGEDSVHDVFRVSSHIQPNQPM
ECLSQSVDYNVDEVKALCQSHCSWTDGAESRALHLVHHVQMISGCQETLPVLSAQELKDSQQEDLTISKVLSFLIRQRRP
SRRERHGASAQVIRLLKQWSKLEVRDDVLYRVTKDPLTKRKRLQYVLPDSLRNKALSGIHDLTGHQGQDRTISLARQRFY
WPDMEKNIREYVQCCRRCVLAKSPEPAARAPLENIKSTAPMELVCIDFWSAENSKQCSVDVLVVTDHFTKLAHAFPCANQ
TAKQVAKKLWDNVFCIYGFPERIHSDQGTNFESNLIAELLRLAGVAKSHTTAYHPMGNGGTERFNRTLGNLLRSLPLKEK
CQWPQQIQTLTFAYNATINETTGYAPFFLMFGRIPRLPVDIMFNQVLDNPDIADYDSYVKSLLCCLKNAMDIAQKHSSVE
QRHQANQYNKRVKGTRLSVGDRVLVANKSERGKRKLADKWEDGVFTVVEVNPDIHIYRIRDASGRTKVVHRNLLLEVNFL
PIVGIDKEQSTSENNQPLIIVESDQNGADQDSSEDLSAVSFTESSIQSSSDYPYPLPVCESDRNPVVHVTLPVDLENSHD
LDEVDTVDADIHQSPGAANELPTNEKHEQDSNEIAQYLPGSPDLLCSDPSLRGAENADLVKPVRTRVGRIVKSVNRLIES
MVQMPVSKVQVV
>Gypsy-1_DG_pol#LTR/Gypsy 1922-5122  [Drosophila grimshawi]
MWTYRSSYVSMLSVGKRAPASATEGRAGAEQISPKTLIGSLQDEGAQLTAVVEIGNCRYKATIDTGATSSFVSEKLAHGL
INVGRRSATARRVRLADGRNSGVREQVEVNIRLGLRNMDIALLILPGVIDDLVLGWDFLSGMGTVLECAGLLVSIPKCET
NHQEEMLSVAKTVETPIHPDAEIDQFLRGELAAFGEIKGTSPITEHRIVMSDDRPIKQRYFPKNPKMQAEINKQVDDLLT
KGCIEPSRSPHSAPIVMVKKKTGKWRLCVDFRQLNGKSIKDAYPLPRVHHILDQLREAKFITSLDLKDGYWQIPMEKESR
ALTAFTVPGKGLFQWKVMPFGLHSAPATFQRALDRVIGPEMMPHAFAYLDDIIVIGKTREEHMDNLREVFRRLRAANLRI
NVDKCDFFKKELKYLGHQVTEEGIRTDPEKVAAIAELKPPGNVKELRQYLGVASWYRRFVPDFATTVHPLHTLLKKGTKW
EWTGEHQEAFEKVKAKLTQSPVLACPDFSKPFCLQTDASNYGLGAILTQDSEEGERVISYASRSLNGAERNYSATEKECL
AIIWGIRKLRPYLEGYHFTVITDHMALKWLNSIESPSGRIARWALELQQFDFDVKYRKGNLNVVADALSRQPLKDTCLRV
STMDDAMDQANKCCNWIQKMRSDIAKNPRKFPDYSEESGNLYRHIPHRAGTEDVVAWKLCVPTGKRRQVLIENHNTATAG
HTGSRKTIARIAARYYWPGLYRDVRAYVQQCEICQQYKPSQMAAAGQMLTKIPEEPWTTVCADFVGPLPRSTHGNTMLLV
FIDRFSKWTEMVPLRSATTATLQKAFRERILARFGVPKVLITDNGTQFTSRALKNFLEEMGIKHQFTAPYTPQENPTERA
NRTVKTMIAQFTKDNQRRWDEALPELTLAVNTSVSSSTGYSAAFVTQGREPRLPKALFDEVTVGTGQVAQTPSDNAKKLK
EVFEIVRRSLEKAAQDQARHYNLRRRPWKPNIGDRVWVKLHHLSNAAEGFAAKLAPRYGGPYQIVDFTSPVICKIKGITD
RRIRTAHVSDLKPHNDRKDTGEPENSKH
>Gypsy-1_PI_pol#LTR/Gypsy 1004-4906 [Phytophthora infestans]
MKKTSKMLLDCGATTIYVSKRWVEEHQLKTTKFSDKNIRVKLGDNQIVEAQLEVLPLRILVAGIDEAYECVAVVYAIPEE
FDCILGIPFFEDMQPQIDWRRRRIEGTIERTLRWERAGETCGPIEEGGPVIASGLRRSVGAKGLSAKRPDSCRGAALETG
VKSAVNPVHDSEQSETPRVACERLEDASAGKGSADEDERKSSRRDGTAAGSSDTRGRDSVVEKMFTMGITDEAGIQTKFI
TRKKLRKFLRIKTKSIEEPDFMLVLTNEMIKNVARSLERRDQPDNVGTAKAQRYLETDWQSFQANPAFDLLTKYKDTVFQ
PELPEGLPEKREIEHRIDVKDPNLAMYRQQWRQSPEQQREIVLWVIDMVKKKLIRPSISPHAAPTFCVRKPVGWRIVHDY
RYLNSNTIRQSIPMTRKEDILDAMAGGYWFSTMDLMSAYYQVRMRAEDIKFTAFQAPNGLWEYLVLPMGVCNAPATMHRL
TSKLFRDLENTKSFYDDIYIFTKTQKIEDHLEALRKTLDILRDNKLYVKLSKCVFCADEIPCLGDFVGRNGVRMDPDKVQ
TIKDWPIPRTQEELHSFLGLTGYVQRFCPDYAKLTASMFTLLKKKSKRNAKIRFDEEQSKNFKELKKRLCNPPVLHLPDF
NQPMHLRTDASKFAVGGVLFQVVDGVELPIAYTSRKMKSAELNYPTQQQELLAIVHALAAFRIYCLDKPPIVETDHKSLE
GLFTQKMANRRLARWYDILAEYQPTFSYLPGAKNGIADALSRRPDLQPETKYFHDLSVTSFNDASFSLAVSEVTTDSELI
AKIKKAYKRDREAKAIFTAIQRRADSQQAKARRQQKKQYRCYSEDNGLLWYQTPSDDSPRIVVPNDVKLRQVVISECHDS
NYGGHPGSERTYLTLARRWYWTKMLKSIQSYIADCEPCRRNKPRLTKPPGLLEPLRVPDERWRSISMDFITDLPRTKREV
DSIWVVVDRLTKRCHFVPTTKKVDAEGVARLFIDHIWKLHGMPTSIVSDRDRKFVSTFWQHVFKSIGTTLKMTVAHRAQG
DGQTERMNRTLEEYLRCFVGPVQDDWDIHLANAEFAVNSTVNSSIKMAPFEADLGYVPLNPLQLAAENRGKVPTSRRGAE
FNERQAALLRRCQEALAEAQERMRDVYDRNREEQVFEVGDRVYLSTKHLDRKHTGLPNSSKLGPKWIGPYTVVKRIHNHA
YELNIQAGNKLHPVFNTGSLKPYKDATRMSRPHDVVLADGTVGQLIQRLLGKRTHKQRTQFLVEWVGEEKPTWEPVENLS
QVPDLIGDFEASRRRKRRRR
>Gypsy-1_DP_gag#LTR/Gypsy 842-1939 [Daphnia pulex]
MADQDQADHGEFVLPHHGPGNDVHPPNFEQNVPQNVLGAPNVPPLIHVGNFRERDPPIFRGLPHEDVVEWIHQFQRVSAF
NQWGPVQQLRHIEFSLEGVAATWLSGLQPRPQTYDGMIAALQEAFRHHNYAMELESRLRARKQKPNEPVMSYCYDMIYLC
SRVDPEMTEERKLQFIFPNMEPALMQKVFPQMDQLTTNELFRRLQAHSQASLMAERSIPVNNIVPAPPVNKKEEIEKLVR
DEVSKSLDPIVRRLEQATRTMGTAGGSGSNSRMRTPERGRNSQWQNRDRPNKRTIDGRPICNSCGTPGHIARNCPKGGKG
CFNCGEPGHFSRQCPKRKQDGGSPNEQEPKDSNQKPANSPKRQSN
>ATGP3A#LTR/Gypsy 270-4759 via tfasty with ATGP3B, 1 frameshift and 1 stopcodon. [Arabidopsis thaliana]
MVVTRSSQEEDVKGKGVEKEDLIATRMTKLEEMVAEQHKSMLKHMADMMSAMSRTTAKRVTEGEKVLDRSVPRSSTSSMA
RSGFVEHQRDFQRDFRPEMVRQEVNNQYGNLTRLGKIDFPRFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHA
ATWHHSFIQSGIGLDVFFNWPEYVKLLKDRFEDACDDPMAELKKLQETDGIVEYHQQFELIKVRLNLSEEYLVSVYLAGL
RTDTQMHVRMFEPKTVRDCLRLGKYYERAHPKKTVSSTWSQKGTRSGGSYRPVKEVEQKSDHYGNKSSYKPVSQQPKRLS
QQEMSERRAKGLCYFCDEKFTPEHYLVHKKTQLFRMDVDEEFEDAVEVLSDDDHEQKPMPQISVNAVSGISGYKTMGVKG
TVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQIKGFTWKLQSTTFQSDILLIPLQGVDM
VLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLHGIITGSVRDIKAHKLQKTQADQIQLAMVCVREVVSDEEQEIGSISA
LTSDVVEESVVQNIVEEFPDVFAEPTDLPPFREKHDHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSS
SPFASPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTH
NGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKLFAKGSKEHLGH
FISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYYRRFVRNFGVIAGPLHALTKTDGFCWSLEAQSAFDTLKAVLC
NAPVLALPVFDKQFMVETDACGQGIRAVLMQKGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKT
DQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQGKENLVADALSRVEGSEVLHMALSIVECDFLKEIQVAYESDGVL
KDIISALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITNKLLQWLHCSGMGGRSGRDASHQRVKSLFYWKGMVKDIQAF
IRSCGTCQQCKSDNAAYPGLLQPLPIPDKIWCDVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAF
LDNVYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPL
AEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHLMRAQHRMKQFADQHRTERTF
DIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKCGEVAxKLALPGNSQVHPVFHVSQLKVMVGNVTTSTQLPSV
LPDIFEKAPEYILERKLVKRQGRAATMVLVKWIGEPVEEATWKFLFDRQQKFLGLDA
>SFV1-4_AMi_pol#LTR/ERV4 1946-5008[Crocodylidae]
LAAVDSAGGPTHYPDSADPRPYADFIVQHPRDPNNQKRVFFLLDTGSQVNVVTKATPHTLTSKTIQVQGLNAVATTSKVR
IIICGMVLEAVLGNINILGIPGIRKLNLKERVLQALPITISKAEWHKPELHNSSVWRYRPIPTKNALKRSLTSLLQRLEE
QGCIKRVTMSTYLSPGWGVAKPGTSNEARLVVDYREVNKRCQPLAQPTPSTLPQCILEMAQYQAHPWVGVTLDLKNMFFS
IPLTDPEGVLNMCVEGIMYQWTVCPQGYRNSPALATGAINRTLEAFAATNRDLQNEEYKIWNYIDDIAIMGRNTEVIREI
ATRLVNHLQQAGWTVNLNKSHLHPTANITFLGTTFEGTTRRGTTHRSPDLEPLTRPLPTDKRSLQRLLGHLNWYRQYIPP
LHLPIVAKLQRQIREKTRKSTPWTXKDDDHLRRLLDTIRTTSLVAINLDEPLVITLGYTDTHVWATAHNSRDEIIFAAHK
TLQATQNRYGHLAKVLLAGQLAESLSSGHGTLRAPLATLIPSMDPERIDPHFQGEPRTWNTLVVNHQYHWHCWKHEDATL
IPDLDENRTPTLYGTTDPAWIGSDGTSREGGGYGYYCKPCRHAEVINSIPKESSPQLCELLGFKAAVQHCLDHHDNTLPV
PVIAIDSLYIYKIVTGTAKETENRSVWQDIWGAISTFVTPPLVKHTRSHRLDTDPVHETIDKLLEDPSRRDVVLAVSIPG
SSPEADPFLIWLHEHWGHPGPQASYQRWKLKTQGSSSSGQYASQADWKRVAKSCEACAKEKCHRTSHKIGALNPEHFFPG
KTWQVDLLGPLPGAKPPNKGLVIVDLGTRQLQVVPLRKSNAVAVITALTAAFATWKTPQEIQSDGGPPFNSNAIDKFARL
HDIKWHLHLPYHPQSNGVVERHIGLYKEQLRLRGGGTYKNWTKHNHDVLISLNMSKPLWDESTSRKPSPWEPKFQPDELV
WVTIPHPHQSHPLVHKGTVRQSEPYPNTYSVWLEEKPDRPLIIAHHNWLTRRALQTNVPSN
>SFV1-4_AMi_env#LTR/ERV4 5131-6801[Crocodylidae]
MLRFRARDDHRRRERERERAMPYNIFALGLLLANPILITLSDVEDPTTDNTVLAMLSSWAEAIGDQSERDGLTACLRPPL
SVDDPVFTPYLIPLNVTEWFNVRSKESCTSINITRSNPWMTTSYGWPQNFSLAHFDTTEKFCHVNYSPLTDDGDQTSTPV
SEPIACARIPWGINPQGIDWSRPDSSLTWDPQSISPPWYLPLPPCATCPHPKKKPLVTPSPFIQPPSKVVWDTSLEVNVL
SSRVWYSFYYPILRAALLSSACHNKSLQIPNRAWLAHAFSGNCEQLATPAPMGMLWACTDGRLXMTLPAILSEVQCFLTS
VMLCPPLSADTAYPISPTMLRRPKRRTPVWSSLTGSERVSKFFQWGFXGTFGWAGIGIGKARVAVAQLAEQVERLANDTA
LGFSLVNQQLQATSHMTMQNRLALDAILIQQGGLCQYLNLSTTHCCISIPNVSVPLEQQVATMRKIATNANKIAQLGKGW
LADFFNWVGWDTSSWLIHLLTPLITILLPFIAIAIIVCMGCCIVQLIQQRLTKLSSFVYTRLPELPENDELIDDTXI
>SFV1-6_Gav_env#LTR/ERV4 4200-6494 Orphan protein so far.[Crocodylidae]
MESIRIFLCILGLFVLMNAEDKCTDCTQDSICWVNTTMCAINTDLYTQWINDSGIPAGCFEHFYCKLDGNRTLIYNLTGM
DGLTLNTPIGKLTVFWTMNQCNTTDAVLQNWKIPWTFYQCSVPVIQQNNPIRRYCNGTWNPLCSYNVTNCNYVNTTGTFV
KLPETCYSTFEQVLSHKWCEKANITVKIVNLPLGKGCRIYNFSLIAGTSKYEQNKNYSGSYPVLNSTDLSWIWYKSNCWE
RNMNNCSQYNNCSSCFYLNDFTYVHGATGMVLGADQPYRIRQIEGYYVIDPDTWQIDSAVDEWSTTQNETSLNASLWYAQ
QHWKLNLTLILPHNNLTELHSIVDCYRSSMNPPQKITLEVVCKQKRSLAQISQLATTKHNIELLQSIVTYTQNLGRKVQQ
LVSIDLDQVNRTSIYGRALRKIIQEQPCNQLVKNVTVRKLLLTAVMARTPRIGGLNPLRFCTPPGGILEESTGRITTECL
IPDGIMCRLFTPQMIQPLLVICNQDSKAKCLTNTTYTLCVHQDPRWTADVASISAVGDCQTPLTLKHRGVRTWKFTSGTV
LCLDFNCSIIQGSSLITYKGHSIYIHHGKAHVIIQESNLIQADFWQILLRDLDLTLHNQGIDVLQLQRLGNEIEMWLSSG
EYIREDLTKFISVIYQTVSTNTQTPEYLQAILEGLSKPLTWLGDIAQQAKETIIKHMQTSNTVTEGMSNLIWQMGDSVWI
FVIILGILVVCIAVGVLLKCCYPYLQGYVKLSQSEVAIFIKEEEV
>SFV1-6_Gav_pol#LTR/ERV4 1161-4139 via tfasty with ERV1-5_AMi_pol, 1 stopcodon. [Crocodylidae]
MEQLSLATEPRDDGDFRPFAFLQWEGKSKLFLLDTGAQITAVTEGGIETGKVSGISGVTGHGIAYEVLGNLEGRRVKAYR
VKGLKHCILGIDNMKYNFSAFDLKTLQKSQNVANAPVIPLKRGPIYTPQFPIKKDSHAIIDQWLLDLQDKGILIKQISPH
NSPIFVVFSGSKPRVVVDLRKVNQSTKFLGGGAVAHKPRLELQVRKTLAQMTNPFMAVLDLSQMFYSIPLEDPERVMSIT
WRGVQYGFTRLPMGWHNSPSIASQYVNSLDGTILQHCFTICKxFSTGIEGVFVYIDDIFLCTEGKEKCLKLIDQVKEILN
AHDFRINLEKKQGPAQIIQWLGKTWTPEQIKADLAWQAKYQWQTELQVPTTKKECQKITGILNQLRDQHHEVPIAVKLLS
AGIRKTADFSKLTLQEKLREGTRLANRILHSALELTHPQPLVVADVYILVFQGIYQIKVFQKGKIVWITGANIPSAWKIL
TYAEQEACVLTKHGSGLLELEIRQYQIFTQYLDLRLIWNSEWNYIWPRFSKLKIARKLEMLISCVKEFNLVSIDTFLSGF
VEWQWARMVNDTDPPAWIFSDGSNKGCVTVCQKCQLQARKYNNENAQYNEGFGILCALQHCAINHSSEQVVLGLDTQYGI
NRLLIIHKPEFSEITHNHQKLWMDIKMQIQRLDKVLLLCKFISHKDKAFDRVIEPAWNMMTLDSDIELANRIMDIHEKLG
HLGPVRLYNLIKKYETGKPVPTVQQVKNVLKWCDICNKWNIQGTHNKWQKGAYDPAKYILNEVWQXDHIGPLQGAKDYKY
ALTCIDLATRTLMVVPQRNLSSSNTIKALQLCLASKGQPGQILCDNGPAFTSRKFQNYCDNIYPRIQIQYVAPYTPQSNG
VIERANGIFKTLLRKELNSENFKGWTKIYLECVIIYNLSYGLNYVPFPQTIVQKHKNQVKFPPGTETWFRIPQSKARQLG
KVFEWLSPTIVRLKDYEGKEHIVHITKCKFIQK
>SFV1-6_Gav_gag#LTR/ERV4 42-1121 Closest (distant) matches to TguERVL-A_gag in zebrafinch.[Crocodylidae]
LQNYYNYQRCQKNQKSIPSAPLLETPPEYESAIATQVYPVVKSEVRSQQGPANDQGEAPAPVITTSTSLRNFSPDELAKL
KRLVRQQYGGGFIQGLINIFRAGEEFTQLTPEEARIVYSASPQHVVPTDVPPWNAWRAAQQPVQDRLDYQYFVWWHLWTA
RQGGGFQMFELLVKKARDPDDLYYLMLAISVSTTFAGNWGPECEQWNHDTAVLRHPKLVNQNCDVSDAIRTLILAGGGRR
IRDVMEGIWDLFSKERKSPRQVMVVNNFGERGHAYNSFRRXATVPPYXKTDPRRNMWWKFLREKGDDMTTWDGKPDWMLE
RRARQLGYKDIPQGQNPKTQSRENRKVAQLDSQEEVDLLQ
>SFV1-3_Crp_env#LTR/ERV4 5058-6731[Crocodylidae]
MRLIATLIICCVMYSVSCMLQHNSFLTLLAVSTTECHNFEETGNSTIDYRLCFPKLTAATDTGIVTHLGRPSSSFNISHY
LNLFRCNLPSADVSGLPFTISASVFIPTLKWPYVCIGPRCPADTINCSTPIITILEALNVTLTNNSLSQIADCIYVFQVN
WTAGRNRSLTEPKMQHNIRMLCSILHALWPQCPTYDPLNPKEKNRPNCHKTNSSTPVWLITPSYLDYAQRRNGACKRFRP
KPCPFPIPRPGVLYTDLAVPCLWSHFKNSNNFTKTTIKENSPSCNYPVPNGHLPPGWVWFNLKTNVTSIYPVLTSDETLT
PVTSLWSLKGLQVGRKKTTTTTHRKSNLSHTKRASLTHEQVDYAWTLMDSWDKVGIYFPWTYGSKMNTFKIVLLTETVAN
LTNLVTEGFRNIDESFKKVQAAVYYNRLGLDYLLLEHGGLCAMFKNDSHCCLEFTPQDGGNLTQVLNSLETLSAQLQEMT
TEKESWLNDLFDWFGFDISKWFFPMLIPILSGFIFILIILCIFSCLFSVIKKRITTLSAFVYTRLPIVYELDEKDDQF
>TguERV5_pol#LTR/ERV1 1856-5338 [Taeniopygia]
ESQGLYILGDRSHREPLIKLKIGPHKQEFTFLVDTGAEKSTIKQIPEGYKVSPEKVQVIGAKGEPFKVSKIKNVVFETEN
KFGMGELLLVPEAEFNLLGRDLIVELQLEIKVKNQELAVSAYPLTVDDQKQINPNVWYSPDTISRLEMPPIKIQISEPHV
PVRVRQYPISLEGRRGLKPEIDRLLAQGILEPCMSPFNTPILPVKKPNGKYRLVHDLREINKRTITRFPVVANPYTLLSK
LGPHNSWYSVIDLKDAFWACPLAEECRNYFAFEWEDIETGRRQQLRWTVLPQGFTESPNLFGQALEELLTEYQVQTGNVL
LQYVDDLLIAGNNKENVKKETIRLLNFLAQKGLRVSQEKLQFVEEKVKYLGHYLFNGQKILDPERIKGILELPMPVTKRQ
IRQALGLFGYCRQWIENYSFKVKFLYEQLPKGKIPKWTPQDQEQFASLKRELSQAPVLSLPDLKRPFHLFVNIHEGTAFG
VLTQEWAGQRKPVAYLSKLLDPVSRGWPSCLQIIVAAALLLEETNRITFNGEVILYAPHNIRGVLQQKAEKWLTDSRLLK
YEGILIESPKLSLKTIGAVNPAEFLYPGEGNELLHNCFQTIEQQTRIRSDLEEEELQCGEVLFIDGSSRIVEGKRLSGYA
IVKWEKGEFKIRESGPLSASWSAQACELYALWKALVSLKGKDGTIYTDSRYAFGVVHTFGKIWEERGFINSQGKELVHQE
LIRRVLGALKMPNKIAVVHIKGHQRGTSYQVRGNNAADTEAKRVAGNYNIILTMQQVPVSKNLSFESAEKEKLEQMGAKE
QDGKYILPDGREVLPKGIAIEIFSKIHSKTHWGTQALVDHFNRQYACIGVYNIAKTVTAACETCQKVNRKNIKQRPLGGR
SPAYRPFSHIQVDFTELPRVGRYKYLLVMVDHLTHYVEAFPTSRATANQVTKVLLEHVIPRYGVPEVIDSDRGTHFVSKI
VRDLTESLGIKWEYHTPWHPQSSGKVERMNGEIKTILTKLMIETKLSWIKCLPMALLILRTRPRADVGISAFEMVYGMSY
RIESPQTNVLIRDRVINEYVSQLAEHRNQLWEHGLIVQRPPLDLKIHKVKPGDWILIKVWKEETLKPNWEGPYLVLLTTE
TAVRTAERGWTHASRIKGPVTRPHWKVISTPGDTKITLKR
>TguERV5_gag#LTR/ERV1 437-1855 [Taeniopygia]
MGAKGSKPSTPMGGVPSVPKNTPLAYILDNWRYFPGTLGKDKQKMIEYCTKIWGGKKISKNVIWPVYGSEEDWVRQQLNL
WVNNKKSFNPEESXYAEVWLERPGARLYPLXETKTKPQKKKEELDETLLTLPPYIPPPVPAAPPEVPRAPTPPPESEQGS
PPPPRRVTRSQRGAAQMYPLREVPMGGPQPVVGYISVPLNSADLRDFKRTEMGNLVEDPLGVAERLDQFLGPNLYTWDEM
QSVLGQLFTTEERDMIRRAGMRLWDAQHAQGPRADIKWPLQRPNWNNQDPAHRTHMQDLRTIVIQGIREAVPRGQNINKA
FNEMQKKDESPTEWLERLRKALQLYSGVNPNDPLGQALLKTQFVAKSWEDIRKKIEKLENWQNRGLDELVREAQKVYVRR
EEESSKRQVRMMVAAVREDRKGRTGEHRSARMKQGKVVIEKEQRSCFYCGKKGHIKKNCRERIRDEENLKTE
>SFV1-1_AMi_gag#LTR/ERV4 0-1754 (ORF starts on last base of LTR)[Crocodylidae]
MASRTGSSGQRGNEGDVDELVRYCPWGNHHRPPTTDADTLRAHVAYHQAGQDGKMGGYVSIRPTEGSGEPLKEWVVSGLS
PAALGCLLSSPAVLYHPPDTKPEALLSRVKPTGTDDRTPAKEYARCIQYLKEGSGCETPPDKFRCPDLDPGGAENEILTA
LRESLETDGRDATGWTGQKWNKGKMINILFRSVTTLLRHAANQASMIDTLTRTAAQQSAAQPEPPLKDGAAGEEEGVAEK
SRAGNPDASETPSAPPEEPPPYNTPPELYSALPADAGAPVLHANPVALVKTVIDGAGTRTLTTFRTRTRGELQELARDTR
LNPGETLAIWLGRLILEHGSDLVDPEECTTLMRQPAWSGGACSDTTQVLRNRVWPIPLCAAAVPALLNRTHAWHADPPDD
PSPAQLLYAIAGASYLTWDAGRYPLTLTPHQANSVWPHRWCHDPGKVPVSASAVEACVEIYGGTNTPMFRLLLHPLVGGP
IGNVLSSLGKLTTARKTEPKPTPPAAVQAVGAWKAPPRKPRTDRSPRGRPPDRTPEERAMFGFLLSKSGLTKNQLRGLGD
EGQRTLALNLGFKPRGQEPDREKNE
>SFV1-1_Gav_pol#LTR/ERV4 1998-5298 via tfasty with SFV1-14_Gav_pol, 1 frameshift and 1 stopcodon. SFV1-5_Crp_pol similar, but full of errors.[Crocodylidae]
MXXHLKSSLKPNEEENKKLNAKVRDMQSKLENNEKTVTKLITAHEEMKKELKSXQFEEXTKDTETKAENRVTNTETKLID
KDSENRGCPYVAVGVSTATDGXKPTDHDPRPYATIDVQSPDQPNDVTSTRFLLDTGAQVNVIKQSVPHKRTNKVMMVQGL
NAVTTTSRVKFLVKNHGKHLDAVIGGINLLGIPGIRALDLKHRVLEALPITTVSEEDRHKPTLKTASTWRYTPIPTKVHL
RDPLDTLLTRLVDQQCIVPIHASARLSPGWGIQKPGKPNEVRLVVDYXEVNRRCTTLSQATPCMLLQSTREMAEYQADPW
VGXTXDXKDMFFSIPINDADGVLNMCVGGRIFKWNACPRGYCNAPALATSAINDSLRRFSENNPESKAVKIWSYIDDIAI
MGRREXTVRKVTEDLVRHLSTDGWTVNTKKSCLEPSTSINFLGTTFTGTIRHGIAHDQLDATTWGEKTPSTKTDFQSLLG
RLNWLRHYITPKHLPVLARIQRQIRDKARQKVPWTPKDTKALGELLVAVKSTSLHAIDLSTTLTIAVGYTEEHLFATAKN
PDGNLVYVTHRTIQAAQHRYGTVGKILLAAQLAEPLAIGRGKLQAIGATLLPRLFHNRPDPNFQGEPATxSALVLNHLYH
WHRWKHEDLPPAQTATDIPNVILYGTTAPAWTASDGTTRESGSYGFYCKPCHDVKIHPGCSSAQKNELLGFKELRHCLQN
HDGTLPVPITAIDSQYICKIFTGTASATENIDIWQEIYDLLSAFAVLPLVKHTRSHKPDTDPVHEVIDKVLEDALRTDCV
FTAENINPEVCVDPYLSWLHENWGHPGPRACHSRWRQESKEKPKYGSRADWERITQACEACAKEKCHPTSNLRGALDPKT
FSPGRTWQVDLLGPLPGAAPPNKGLIVIDLGTRQITVVPLRKTHATAVITALTSVFAVWQTPSTIQSDGGPPFTTVAIEK
FARLHNIEWHHHLPYHPQSNGVVERAVGLYKEALRLKGQGSYKNWTRLNHEVLTSLNSGKELWNKRDTEPTTPWKPRFRP
AELVWVTLPDPKNRHAKVVKGTIQAAEHYPNTHLATLEDSGRNILVHHNWLARRSTLTSTQ
>SFV1-1_Crp_pol#LTR/ERV4 1964-5179[Crocodylidae]
VGADAGHEKEDVRQRTELRTLSSSDQNFGEASCLPISTRQLDPRPYATVPVIHPTTGERTPVCFLLDTGAEITVIDSTVP
NRPTNHIIYVAGVNTTTTAPLVKVRLGDPPIVIEAVLGNQRLLGVHEIRVLNLKSKVCSVLPVRTSATGLPPPYIPRLKN
PTVAPWKYVPIQTKPQLIPSLITLLDRLTAEGKIEPILHSRFVSPGWGIPKPKNPTEARLVVDYRQANRRSDLVQLVPVK
TLPDIQADILATMARGSWSACTIDLSNMFFSLPLNDEGGILCMGVQGRIYRWNVCPQGYSNSPALATQAMNSSLRRFKHP
DDEGSTQVFNYVDDILVLGSNPGDVKLTANQLVDHLRLEGWEVNIAKSNLEPSVTCTFLGTEHTQGGRVTSPASVPTPPW
NISSDMSPTPKQAQQFLGHINWFRHHIAPEHLPALSTLQSRLRKKVAKHQSWTQRDNHRIQALIDSATTTSLVPFGPTTP
LQLTVGWTPTHLWITAHTADGKPAIFLNRALHKEQHRYGHLGKLLLALRLAQEHNLHHGSGTLAAPGVTLLPIIDPERTP
SDFHGTAATWYTLATSGQYAWVNWMYRDSATVTPNPEQRPVLHGTSLPGNVASDGTSRFGGGHAWKCTLCGKSSITWINP
PGQALANAPTPTNAQEMELRGAKAALSHIANVHDQNLTPVVLVLDSQWICSTLTGTAEPEQYSDEWDDIFTIIECMQYPP
MVHHTRSHQNDTDPLHTAVDADLSLGPMLTEEFTSIHTAERQIGSTADAGTSRKPVGDKYLKWLHDMWGHPGIRTAVNRY
RSIGGWKRSARNGLPGPRDWERVTKACQQCARIKPQNHKFLKGAYNSNQFQSGAFWQADFAGPLPGARQYPKALVVVDLG
SRMIGVIPMTKTDGPRCVQAFLQQFSRWQIPAEVQTDGGPPFNSRCIQQFFTTHNVRHHMHLPYHPQSNGVVERTIGELK
RKLLLTLQRTDFKGWDRILSEVLINLNADKAPWAARTLQTRRGWQPNFKPGDLVWVAFPTPTPTKYPPVFPGEIIEATAL
AHTYKLRLVDSSDDREHLVHLNWLKPRSDLLN
>SFV1-8_AMi_env#LTR/ERV4 4946-6481[Crocodylidae]
MAKVATETSDPDDPLRRNSVLQLIETWANATGPHPAGVTACIPRPSAIEGDVLTTYVTPLNITRWFHDVQGPLCGTFICR
ATGPIPCPGCQVVSFPDHTRTRGKTMVAYYWPSGPITKRNITSLNCVSWGLGGYKIQPVDCNRIPWGARKWGTDDDQVQT
LPWSARQHSPSWFLFLNSTPIWRGGWDPKKGVNLTKSNGNHPLLSAFFPLRQAEVRYFESRNLTHPYCTPRVQALWCKRR
NLPTNAPRGLMWACNDGLLYTALPSNFDGACFIAHIELCPPLATNTSNPYTPWFRRSDSRRKHAGTVWSKMTYGEQVAKQ
FEWQIEGLFMWYVGIMKARVAIARLAEEVEVGFNATNEALTLINNQLQETSRMTLQNRLALDAMLVHNGGVCKYLNLSTE
YCCISIPNVTVPLLSQLDLIRKAAKGANAAAGISNGWLADLFSSFGWNLSSLAMRIIAPLLTLLIPLVGILLCVCVGCCI
LNTLKRRLMTLSTFVYTQLPTANEEGIELEGI
>ENTV-2_pro#LTR/ERVK gi|33354435|ref|NP_862832.2| gag-pro fusion pro [Enzootic nasal tumour virus of goats]
SFAPGFGKLGEGPAPGPETMLWGNXAGSKRTIADLCRATRGSAGLDLCATSYTVLTPEMGVQTLATGVFGPLPPGTAGLL
LGRSSASLKGILIHPGVIDSDYTGEIKILASAPNKIIVINAGQRIAQLLLVPLVIQGKTINRDRQDKGFGSSDAYWVQNV
TEARPELELRIDGKLFRGVLDTGADISVISEKYWPTTWPKQIAISTLQGIGQTTNPDQSSSLLTWTDKDGHTGQFKPYIL
PHLPVNLWGRDILSKMGVYLYNPSPTVTDLMLDQGLLSNQGLGKQHQGIVLPLDLKPNQERRGLGCFP
>ENTV-2_gag#LTR/ERVK gi|33354434|ref|NP_862831.2| gag protein [Enzootic nasal tumour virus of goats]
MGQMHSRQLFVHMLSVMLTHRGITVSKPKLINFLSFVEEVCPWFPREGTVNLETWKKVGEQIRTHYTLHGPEKVPVETFS
FWTLIRDCLDFDNDELKRLGNLLKQEEDPXHIPDPEPGYDAPPPPPPSLKLRPSDNDDSLSSTDEEELAEEAAKYHQEDW
GFLAQEKGALTSKNELVECLKNLTVVLQNSGAKFSNNHVKPPSAPPFPPAYAPSVVAGLDPPPGPSLPTEIMSPLQKALK
QAQRLGEVVSDFSFAFPVFENNNQRYYEXLPFKQLKELKIACSQYGPTAPFTIAMIENLGTQALPPNDWKQIARAGLSGG
DYLLWKSEFFEQCARIADVNRQQNIQTSYEMLIGEGPYQATDTQLNFLPGAYPQISNAARQAWKKLPSSSTKTEDLSKIR
QGPDEPYQDFVARLLDAIGKIMSDEQAGMLLAKQLAFENANSACQAALRPYRKKGDLSDFIRICADIGPSYMQGIAMAAA
LQGKSIKEVLFQQQARNKKGPQRSGNSGCFVCGQPGHRAAVCPQKQQNPVNTPNLCPRCKKGKHWARDCRSKTDVQGNPL
PPVSGNWVRGQPLAPKQCYGATLQVPKEPLQTSVEPQEAAQDWTSVPPPIQY
>ERV4_MD_pol#LTR/ERVK 3204-5913 (no stopcodon going into env) [Monodelphis]
GQGRSGVAKFFTKFFIRVTDPPALQADKITWKSDSPVWIDQWPLTSEKVQAAITLVQEQLSLGHLEPSTSPWNTPIFVIK
KKSGGWRLLQDLREVNKTMLPMGALQPGLPSPTAIPKGFSKIVIDIKDCFFSIPLDPADSPRFAFSIPIVNHIGPNPRFQ
WRVLPQGMANSPTLCQKFVAQSIDPVRTRYPSAYIIHYMDDLLIAAPSSPLTQTIAQTIVCALQARGFRIAPDKVQTQYP
FTFLGFRLELDXLFSHKVSLTRSTLKTLNDFQKLLGDINWLRPYLQLAKADLRPLEDILRGDADPSSPRSLTPAGEASLK
KVEQAIATQNIGYFSPHLPLYLLIFPTEFSPTGLLWQDPSPLIWIHLPMYNRKILAPYPDLIARLAMMGIRLSTRHFGRS
PDHVVSPYNKEQLDWLKSQNDNWAILISTYQGILDNHMPSNKLLQFFTLTPFILTRQTRSSPIPGAPTVFVDGSKTGLAA
IVMNNRPRSIKTPYESAQLVELYAALTVFHSLPDTPFNLYSDSRYVVQSLLRLEIVPAVQPTTATFSLFSQLQQAIRRRS
CPFFAGHIRAHSGLPGPLSFGNDLADQHTRLAALVTTTTPSPHPSTDPVSLATEAHRLHHLNSQTLRLAYKITREQARSI
VKGCKNCVTLLPEPHLGINPRGLLPGHLWQMDVTHVPSFARLKYVHVSIDTFSGFLFASAQSGEATKHVIKHMFLAMSMM
GKPLSIKTDNGPGYTSQAFKQFCSQLGIKHVTGIPYNPQGQGIVERAHQTLKNTLFKLKTQETLYPLCGNQTLLLAHALF
VLNFLTLDEEGRSAADRHWHPHTTSDLAKVLWRDPLTGLWQGPDPVLTWGKGSACIFDAKANNARWVPSRLIKTFDSPAP
SLNTTLQGPAPEISFVCFSGKYK
>ERV17_MD_env#LTR/ERVK 5049-6934 via tfasty with ERV5_MD_env, 1 frameshift. [Monodelphis]
LATLMNTLNMANTETQTHWVLWEKPPWINFVEFEEDFPEVSLHVQQFGPGWKWTAKNGETGERSAPRSPSSFHPPFEAMP
ERGSYLNIPFNWTGLTKKPPRCVLRHPACIPLVNLTDHFYGAPNYTDKTGPHRVNEGWTFTAWGKISYYGWKGVLQNTRK
DSGYLKNRSFIEQKTRQCSYVPEWDLPFSGKQSHGVFPPFLECDRHDLDMVKFHNVTFFSQHNDSACHNDSFPEAPDKRN
HGCFIGGFATPGWRTSKMYNNRKVGYNYAKIPIAMKGVVVMAYRVLEFPGNIFTTYEGSTNPRHHYMTGSYNITACLEED
FAFMIGPQNSISIKWIGQAWNITCLECNITECITQTPERYTVLVVRRPPLALLTARHSGGWYHSPADRAMERLSQLISSR
KKRCISCIVLGIVALIAALTATTVSSVSLAQSVANVRVLEHDAEYLHGLAQNVTKALHIQQDINTRVFYALQQISKDVLL
LTNQVEILAIKGKLRCDYRYSAFCLLPVKVNTSDAFEKIRNDLQGLWLKGNISENIQQLNHIIEEMDSSLAEDLYPEHIA
DSIYNWIKSGQSWLSPLAQMSITILTFILFIVILLVLLPCLFQLLVSSLGRIGQVLTQHRVLLQNKKGE
>ERV5_MD_env#LTR/ERVK 4877-6471 via tfasty with ENTV-2_env, 1 frameshift and 5 stopcodons.  [Monodelphis]
ILTLLLLFQNLSTATGIKRWVFGEQPPWVEYVSMGHALPEVILYTKTNSDIPGIYHFERQAKDNNQANNLFVPFNWTGLV
EAPPVCLARDHPACLPLRSLQAHYYGHPDLSDSFWIGPYRVDKGVKYEDYGQLQYLGWLGESCDSIWGQERPICPYVMGY
EQRDTVNMFLPLLSCRSKRASCIHWKNMIWVYWHNDTRCIGKKLDSYKFHDCFIGGYSSPLWVMPPELIGYILLISHRFx
LIMERxPWHWIKxICLIMLMLLIMEKSKNQxIEVLHxTFKLDISGGWYHSPADRAMEKLSQLISPRKRRCISCLVLGIVA
LIAAITATTVSSVSLAQSVANVRTLEHDAEYLHGLAQNVTQVLHLQQDINTRVFYALQQISKDVLLLTNQVEILAIKGKL
RCDYRYSAFCLLPVKANTSDAFEEIRNDLQGLWLKSNISEDIQQLNHIIDEMDNSLAEDLRPEHIADSLYNWIKSGQSWL
SPLAQMSITILTFILFIVILVVLLPCLFQLLLSSLGKIGRILALHRILLQNK
>SFV1-19_Gav_env#LTR/ERV4 5816-7429 SFV1-24_Gav_env near-identical with too many errors.[Crocodylidae]
MATGLRDIELICILYICCTYVVKPSIDPVTELEHSSNSVLHLLSLWANATRDDGTGQGLTACLKIPMSVEESVLILYPVP
FDIRDWFVRVSQSRETSINISVPLEGGGYITTSYSWPRNLTMADISTKPTRMDCLEREASYACSAIPWGIHPSGVDWSRP
DMSLKWDPRSVHPPWYIDLKLRGEKVPSNFTLSPLIEATPLIKWNKSLAIDLTKPGPRGKNSEFGFYYPTLRAILLHAAC
HNMKQPIQQSGPPERSRHAYPAPGKCDELTTPAPFGLVWACSDGRLYTTLPAVLSNVQCFLSSILFCPPLQASTAHPPSP
LVSHRETRSSTPVWSSLTRGEKMAQGLSWAFEGLFLWGLAIAKARIALAKLAEQVELLANNTAVGFELIDQQLQATSHMT
IQNRLALDALLIQQGGLCQYLNLSHDTCCIAIPNISVPLQNQVEKIKKITEDVNAISGIGQGWLSQIFKWLGWNTSSWLM
NLLTLLISFLVVIVIVIALVCCVFQCVRKQLSNLSVLVYTKLPTYERVEDKDEYEDNC
>SFV1-10_AMi_env#LTR/ERV4 4957-6588[Crocodylidae]
MAAYSHVVNGIVVMLLLFPTGSSANGTDFATSNSVLSLLSLWANITGDSSELGLTACLRLPLSVNDPVLTPFVYPLNVDK
WFKARNTDPNPNITVAQHSFTYQRRQHAVYYRYSWPRNLTLPKMNRSVCRSEAMFPPAPVLLFYNIACSEIPWGINPEGV
KWSRDDNSLTWNPTAITPTWYLALPPGPNKTRARDESGPVPSVLQRPRSLVSWNGSLAINVSDAQDWRSYFYPILRAARL
SQWCHGYDAPANTVDLPREVALITWKGQSCALISTPAPLGLLWACSDGQLYTNLPAALTGVQCFLSTVMLCPPLSVDTSH
PSSPAVLRRHKRRAPVWSELTDEEKFNQKFVWALEGYFAWGIGIGKARVAIAKLAEQVELLANSTETSLRLLNHQLQATS
HMTMQNRLALDAMLLHLGGVCQFLNLSREHCCISIPNVTIPLEDQLDRIKQIAADTNNVAGIGKGWLADIFGWMGWDTSS
WLMHLLTPLITLCLPLIVIAIVVCMGCCILQFVKKRFIKLSAYVYTRLPPESCNDDEFLDENYL
>SFV1-8_Crp_gag#LTR/ERV4 99-1727[Crocodylidae]
MSYHSASPAPKDCRGYLSLKKGQKEWAFEGSPAALGCLLSDPKTLFHPNDEGHTVSLKKVKGYGTGDPTPAQTWARGLRH
LKDLGAPIPVDNFRCPPVKERSRGHEMAGDLISDLETHGKAAHKWTGPTWDKHKCLGILYQHFVNAVRSYSDLESQFCAA
VQQAADTEKEEVPPAKKAQPPEAAPPTPSAPPPPYGGQDVEPSKGAPPSLYPELPPPPDLPQPVTALPISTTKVTVGLDG
HPVTTTSWRSRSRAEIRDLITSTARHPGEPPLVWLGRMVIDYGYDRVDLEETTMMLRSPIWTSGLGGVNAAVHNHDWPIP
LPALVIMALSMTPHTVHEGPQSTASRGRDSLANYIVGFSYYHWDPTMNPRGQLTXAQAHGVHPHQYLSDPGSVPILMAGV
TAACDLYWPNDPTSHLWLHTFCGQPVSSIPEAIHKLPADPPSSGPTPSVMAAYPDNFDRSSRDRPHDHARHQGREREPQG
PLQRTPRERAMFGFLLNQGGMSKQQIRRLDQDTQEKLASALGFRWDDDNRGGLRERATHPKNE
>SFV1-10_AMi_gag#LTR/ERV4 39-1784[Crocodylidae]
MNLIKCCPWRTGGRRVDNADELWAHIAYHQAVGGKGENLLGGYFSVKGEEAVIKEWKASLSPEAFGCVMASDRVRYRPLD
AVTTVSLAKVKPAGGADPTLAQEYARCIRYVREGGEPTPTDRFNPPTLAPGSRGHELLSDLREKLESEGCTTTRWAGPKW
DKGKMLNVMFRTITTLLRENANLEAQLLTAAQAAKEAAVKESPEPLENPEPPPFQDGAGEKEKRAKSSERAKSPGEEGAV
TQPAAPPPEVTSPPTFPPPYEGERLYPLLPPDTPALSAAAHPVALVKQVTDAQGATRTTTTYRTRTRGELQELCRESKIK
PGEPLAIWLGRLVVEFGSDLLDLEEASFLTRQASWSGGHATDLDVVAGNVHWPIPLPALVAGQVSHKSHAWHDGRPPRAS
AEQLLLAIIGVSYCSWNPRVYQLGLTQPQQRGAWPHRHLRNPGTVPATLNSVEACVEVYGGEDAITLRLLLNPVAGQPAG
NLLSQLPRLQALMKPATRTSSDSEHRLTAYPIEAQNTRRHESDSRRTPRPLPQRTPEERAMFGFLLNHSKLSKQQLRILG
DEGQRHLASELGFKFNDKQKNE
>SFV1-14_Gav_pol#LTR/ERV4 2035-5343 via tfasty with SFV1-23_Gav_pol, 2 stopcodons. [Crocodylidae]
KKRVTAVGVSPATGGCNDTGEQNEQRKTDFELKQPEPKRIPKTKRxLSELKxNRNENETIKPNDLKRKTVTFLTEGVQEG
VEENGYRQETRNGKARVVVAANHTKFFDDDPRPYASIEIQDPDDPLNVTIARFLLDTGAQVNVIKSSVPHQRTSKVMMVQ
GLNAVTATNRVKFFVKGHGRRLDAVLGGINLLGVPGIRALQLKHKVLEALPITTILESEWHRPTLRVNSTWRYTPIPTKP
HLHDQLDALLEGLVRKQSITPVHASSRLSPGWGIPKPGKPHEVRLVVDYREVNKRCTILTQATPCTLLQSLQEMAQYQAT
EWVGTTLDLKDMFFSIPINDSDGILNMCIRGKIYKWNVCPQGYCNAPALATSAINDSLNRFYTTNPESRFVKIWSYIDDI
AIMGRDRDLVERITGDLVRHLNTDGWVVNEKKSHLKPTTRINFLGTTFNESTRQGVAHEAIDFEIWENKTPSRKADFQSL
LGKLNWFRHYITPPHLPILARIQRQIREKTRQRTPWTPKDANALRELVTSVKKTTLHAIDLSTPLTVTIGFTEEHLFTTV
KNVDGNLVFIAHRTIQAAQHRYGIVGKILLAAQLAELLATGKGKLKAIGATLLPRLSHDRPDPCFQGEPSTWSALVLNHL
YQWHHWKHEDLPPAPTIDEQRNVVLYGTTQPAWMASDGSTRNNGKYGFYCHPCSEHRIHPGCESAQRNELLGFREVVRHC
LHHHDGTLPVPIIAIDAQYIYKIVTGTASPTEHLELWDDIYTLLSHFSIPPLVKHTRSHRVDTDPVHQQIDQLLQNPTQA
NVCVTEAIDESVCVDPYLNWLHEHWGHPGPRACHHKWRQASDGNPSYGSHRDWKRVTQACEACATEKVHPTGNTKGALDK
DTFVPGKTWQVDLLGPLPGASVPNKGLIIVDLGTRQMTVVPLRKTHATAVITALASVFAVWKVPTNIQSDGGPPFTSTAI
DKFATLHNIEWHHHLPYHPQSNGVVERAVGLYKEALRVNGHGTYKNWTKLNHQVLTNLNSEKRLWIESESKPTEPWKKKF
KTAELVWISLPDPKHRHPKVLKGVIRSAEKFPNTYLAELEDSQRAILVHHNWLARRAVTDSVQ
>SFV1-12_AMi_gag#LTR/ERV4 81-1715[Crocodylidae]
MELELVRSCPWRSGRRHVSNAAELGAHIAYHQAGGIGGRXVSGYLSLKGEEEDSEEWEAHLHPGAFGCVMGSERVLFRPR
EEGSTVPFARFESSEVSPTLSQEFARCMRLVREGGEPTTTDRFSPPALAFGLRGRAETGPRDKGKMLNVLFRAVTTLLRK
NADLEARLLAAVQEGKEAAVEKSPESTPLQDGAEEGASCPEKPEEKGGASGESAGIRPATPPTEVTSLLAAPPPYHGEGA
SSGGLHPPLLPDAAAALTAACPAAASSRVIGVQDAVRTTYRTRTWTELQELCRGSKIKPDETLAIWLGRLVVEFGSDLLD
LEEASFLTRQASWSGGHATDVDLVTCNVHWPIPLPALVAGQVDYKSHVWHDGRPSRVNAEQILLAIIGSSYGSWNSRAHA
LGLTPPQQRGPWPHRHLRNPGTVPVTFNSVEACVEVYGGRNATILRILLNPLAGQPACNLLRQLPRLQALMKSDTGTSSD
SERVWQPPQRTPEERIMFGFLLQRSRLSKRQLRILGDEGQWQLAYELGFQCPGEPDDESGTSSSH
>ERV47_MD_p2#LTR/ERV1 1597-3462 protein unique (so far) to marsupial ERVs (ERV9_MD_pol, MdoLTR3-int,  [Didelphinae]
SQDYNVCSLVHGDRENSERQTAVKLRRKQIRNSEKVVQEIKSVSDEKCKPSKRSHDRQRQVKQLDAEVKNIISQITTEIR
DLEKNCIVTTHEKSRNQVKTFLENFFQCRLGTGIEFCKRKSQKKSHKLKQELVRDTEKQNFNSLQQNDCNRKSKHKFTVT
NEVTVNGDVNTLETFTDLHNKIPQNSVNSSNSYMAQISLEEKKTSNLNPEAETFHPAMTDLDNTKFNENEADITFENNNH
IQSNGGEITVKFEKMNGMKDLVTERTTKDSNGRLETNILSGGGRGSGQVKLYEINHSYDLNSLSNEVEDIVQSTSNEDLI
GNDLNQEDLTDSTIQLAEGSKEMNSDSVAINTLATQKPETYVWSNVGKNEGTHPSDAGENADVLNLFPEDNIIEGKVSIS
TQSKESEDEQKLQADDRVEPMNFSNSIAYLQEAANPIPSNLPPQNKNLKLINEKQPETDLGNIKAGDIGLDQHRKPELTT
SDTSLHGTEQNPMNNIRITEFSDSESETESEGIPDGVIIIMDQDSDLEQXPYQFYKLYEEVDEEGDVWDTNEKIEYLKPE
QSKSYQYDDDEMIFGHRTSCIPLEELFARLGVDNEDDFIEKLNYMAYTDTDYEWEGGYQGTY
>ERV47_MD_gag#LTR/ERV1 52-1593 via tfasty with MdoLTR3_gag, 2 frameshifts and 1 stopcodon.  [Didelphinae]
MFKQVICGVVVLAAITGYWIYNILYSKMTNMIVDSVEYISNTTMFILQMPFQKETILWQILTQIYIISMAAIQTLTYLKN
IYRFVIPKHTAQIMVVDTNLETLVKNMFEEFLKAKGLDQIKDKGNGQADNAPKEKDRKAKKAKSNAQGNDSDKDTKANSE
AEKIFPLKDVTKISSTAGVLHSKVHRQFTTQELDSLKKRFPKFIDEPYKTHKELKRAFRIFEPNFQDVEFLLAELFSPHE
HHQFIDKTRSETALTSWPTEEQREDFDFSNPISMTYLRKCREDLLQAIKMCCSKPNAWGKFDRLVQNKGEHPASFIDRLS
EMAEAIMGLETNTEESVSHVRRQFLKGCTPHLKNFFRHYFPKYDTVSLIELxDVATYIYDSHTDQSKQVADLKEKLEESQ
KNLRDKEIEEIKKLNTVRTYTKPVYKPRTVQRETRQCFFCHKTGHLIKDCFLKKKYEVSNNKRHKSKIYNKQNPTCCEHC
TLKSTQHATDLQEMKDAIKSGAKPKYSDMVRREL
>GGLTR11_pol#LTR/ERV1 1374-2831 via tfasty with CarERV2_pol, 2 frameshifts and 2 stopcodons. fragment [Gallus]
RITGVEGSGMIVSLFETTELKWEDKIVTGQLLYVPEAGTNSLGRDLIVKLGLQLKTCETGIKVSMNLLTADDEKEINPKV
WAGEGNRGGLTITPLKITVQGGSEAVKQRQYPIPLERIMGLKPVIQTLVKDGLLELCMSPYNTPILPVQKADGTYXLVQD
LRKINEIVLKRHPLVPNPYTLMSXIPXEHKWFSVIDLKDAFWTCPLDSESRDLFAFEWEDPETGRKxQYRWIVLPQGFTE
SPNLFGQVLEKVLEKFQVEEGVKLLQYVDDLLICGTEESKVKETTSKLLNFLGNTGYRVSKNKLQYVEKEVRYLGHVISE
GKRRINSERIQXIVQLPLPGTKRELRKFLGLIGYCRLxIEAYAQKKKKEIDLKLSEGEPNILKWTKEEKELVEVLKRDLI
TAPVLELPALKKPFHLFVTVSEGAALGVLTQEWGDKRKPTAYLSKLLDPVSRXWPECVQVVVATALLVEESTCVPFGGVR
SKLLSC
>HERVFH21_gag#LTR/ERV1 455-1967 via tfasty with HERVFH19_gag, 4 frameshifts.  [Primates]
SSIHYRSLPIHSFQDHPAGCLLRNLNALGLHSEIRSKRLIFFNFSDTDNFCHRNGKWSEIPYVQAFFTLRNRPSLCQSCS
TFQILLARSKPDSPPTPLPTAPADDSSSFDPANFPLPRKHHDPPPEHPDPPPYVPTPALPFSPPLSNHPASDSGSSLSPP
LTPSLAQDAQQPAPLLPLQEAAGVERIVRVHVPFSLSDLSQIKKRLRSFSSDPDTYIKKFKYLTQSYELTWHDLYIILSY
TLLPEEKKRVWLAAQAHADDLHRQDPTKPVEAAAVTWEKPSREYQPTNPSRASHNHMITCLIAGLNKAAHKAVNFEKLKE
ISQRPDENPAQFLFRLTEAFQKYTHVDPASQEGTIVLNTQFISQSTPNIWRKLQKLDDSPQTPQRDLLNLAFKVFNNRDE
ERKAKTGRVSNACLCHQGLLQATGRSSTWKPPSNSLPPGACFKCGNEGHWSRQCPNPDKPTRPCPSCGGRHWKSDCEWPP
QGLPPSLPEPAKTSYSDLIGLATED
>HERVFH19_pol#LTR/ERV1 2263-5880 (1 stopcodon) [Primates]
GCPGSFAPTSSESTEPRVIGTVSSKIISFLLDTGASLSVLTEYQGPLERSSVSVVGMKGIQETPYKTPPLYCSFQGVTLT
HSFLVIPHCPTPLLGRDILHKLGGIIHLSALHQSHPYLLLCQEQNPSSDTPHQTDLNPKFLSQVNPIVWNTDSPIIATHH
SPIQISLKDPKRYIVVPQYPLNPNGLRGLKPIISRLLAANILIPTHSPHNTPILPIKKPDGSYRLVQDLRQINSAIVPVY
PVVPNPYTLLSRIPPNTSYFSVLDLKDAFFTIPLHSSSQNLFAFTWTDPDTGYSQQLTWTVLPQGFRDSPHYFGQALQLD
LSQLPLQPSILLQYVDDLLLCSPSLEHCIQHTTRLLNFLAECGYRVSKRKAQLTSPKVSYLGLIITPNTREIPPAxKQGV
QQIPFPKTKRDLLSFLGLVGYFRLWIANFAIIAKPLYEHTKGNLDQPLTPTPDLYHAFSHLKHALLQAPALGLPNPLRPF
HLYLHSSHNQALGLLAQPMGDSLQPVAYFSKQLDPIYKGWPLCLKILATASLIIPEAQKLTFYEPLQVFSSHSLQDMLSH
KALTSISSSRMQALHSPLLQPSISLHRCSPPNPATLLPSTPILDPDQHSCSDLIESSLTMFHHLTSTHIKGAPDWFIDGS
ASKNPPLQAGYAIIEGYHYDTHSLPPRRVVEAAPLPLGTSSQQAELVALIRALTLAKNTQVNIYTDSKYAYNIIHSNAQI
WSERGYLTAKGTPIINGKLIHHLLKAALLPEKVAVIHCKGHQSDKSHISLGNREADYWAKHASTNHPIPQYLFPLIQHIP
SFYPEHQIQQLVTAGAQFKPPYWFIQNKLVLPDPEKTTLLRDIHNLFHTSHSPLQHFLSSHIHITPDIKEQLKAISHQCS
ICQKASPHSNTRPPSFPTHQARGHLPGQDWQIDFTHMPPVKKVRFLLVLVDTFSGWVEAFPTTNKWASTVTSKLITEIIP
RFGVPLSFQSDNGPEFISQITQTLAQALQITWKLHIPYRPQSSGKVEKMNGILKNTLTRYSLQTHKDWVTLLPLALLKIR
ALPRKPLMLSPFELMYGRPLAPFVPPQGQAPPLPTPLVSPLLHTICHFIWEYADKYLPQPVTDSSNPFLQPGDWVLVKDP
SPTPNSPLTPKWKGPYQIILTTPTAAKLQGLPNWFHYTSLKKTDFPSPHTQTTKSKTPSAFSCVSTGPTSLRLTRIPEEK
GEKST
>ERV39_MD_gag#LTR/ERV1 326-2000 via tfasty with MdoLTR3_gag, 7 frameshifts.  [Didelphinae]
MEKMLQLLFWATLMGVLMVYWGYCVIYNTISGIIENTIGTVVNITTSWTQIPLDMSFLWNTLPQLYVVFMAMVQTLNYIK
VGANIIMQKKAVKTMVLDNRLEALFEQIPILTEICQEYMLKKQENMGKGKDMVTGEVTKEDVTGNTDMDKDSKTTKGTAL
GAVGVNTMAGITETQGNTTSDSTLGAHKIMPLRDVAKLTDNSGILHAKIHKSFTTQDLDSLHKRMPKFISEPHRALKELK
RAFRLYEPDFGDVEILLGELFTPQEHKNFIARTRQDSSLTSWPESYEDFDFANPLSMSYLKKCHEDLLQVIKQLSECPNA
WGKFDRLQQEKREHPSNFINRLLENVEGLMGFNPDSQESLAHVRRQFLRGCDKWLKDFFRNYFPKYDSISLNELRDIATY
LYENQLEQEREKNELKKKLQDTTETLKQKEIEEVKNLATIKTFNRQTPQYQQRGQRDTRKCFLCLRIGHIVRNCPQKQRY
EQGQNKGGRYQNTYSQGRVYTNRSYGRQQTNEKACCSHCRLREEETPDLKSMQNAISQGAKPRYSEVVSKGNHYSA
>ERV24_Prim_pol#LTR/ERV1 2228-5926 [Primates]
GCSEEIKGTFSFLLTNTLGEIEINLNGEQTQALTDTGATLSVINPTLLQGPIPRSEKTIQMVGVTNTPISAYKSQPIVFQ
LGPLQGTHVFLLVPSAPIHLIGRDFLELYNTHISFSQKGEMYLELEDKIELLGSKIFSKSDPFNSQIAIHIAMEETKLLN
NEELQELLKIVPDQLWSKSSTDIGKIISAAPIKIQIDPSKPLPNLKQYPLRSEASEGIRPIILDYIKRGLIISCTSPCNT
PILPIRKPNXRGWRFVQDLRAINNIVIPRHPVVPNPHTLLTAIPTEGEFFTVIDLCSAFFSIPVDKDSQFLFAFTWEDRQ
YTWTVMPQGYTESPTYFSQILKADLSDVDFPKKSTLIQYVDDLLLCSGDKQASIEDGIYLLQRLASKGHKVSKEKLQFCQ
KQVRYLGHLISKEGLFINPDRIKGILAFPTPKTKKQLRGFWGLAGYCRNWIPNFSLKTQPLYTLLKQDKPDPLEWTEENQ
LTSEEIKKSLIDAPALGHPNYNISFSLFVHENQGNALGVLTQKHGDQNRPVGYYSQQLDPVAKGLPPCMXAITATALLIR
ATEEIVMGSPLTVFVPHSVEALLNSHHTQHYSVSRLASYEVLLLSAPHITISRCNNLNPATLLPLPSDEMPHDCIILTDQ
LLSPRTDLQETPLTNADVIWFTDGSYLKDESGIYHAGYAIASLTEEIESAYLPGATSAQQAELIALIRACQLAKGITANI
YTDSRYAFGVAHDFGMLWKQRGFLTSSGQSIKNGHLVSELLEAILLPKSLAIIKIPGHSKSDTPESKGNQLADSIAKRAA
LNVSEQENQPILAFKEALDFDIKLAQSKAPKTEQENWETKGGTYSSETGLWYGPNGLPILPTKLQSSFLTYVHDLTHWSP
DKMIAWGKQYYWKPSPTVAHKVYNRCHICPKHNPGKPLHSSQGHFPLPEGPFEVWQLDFIQLPPSQGYKYVLVMVCMFSH
WVEAFPCRRATALAVSKILLEKIIPTWGVPLELHSDRGTHFTGQIIQSVCKIWPILQHFHCAYHPQSSGLVERTNGIIKT
QLAKLTEVFKIPWPKALPLVLLNLRSTPFGKHQLSPFEIITGRPMKLSPGNCESMILKGDMLYYCSGLIRQLTKNCNLVK
DSFHSELPGDEKLKDHGLQPGDFVYWKRHLLKDSLQPRWKGPYQVLLTNPCAAKLKGIDSWIHVTHLKKAALPIWTSSQT
GDLKLKFSRTNKDKKKTTSEVVSFPKTPDQACI
>ERV24_MD_env#LTR/ERV1 5997-7814 via tfasty with HERVS71_env, 2 frameshifts and 1 stopcodon.  [Monodelphis]
MGKGGWGGAMLGLVLLGFLEISLPFQVIQYRWVISRTGDGKELISDRPTQEEKTPKILFDLCDLLGSKWIDPSHTLSCAT
PVGTLYLAETPVYACPSTGPPSCKIGREFYCAAWGCETVAPWRQEDPDIILQRERSRVWDAPLDSRNPLSLTIKNPEDKG
WLLGQTWGLRLDVRGKDPGIEFIVQRIADKMQPSPVGQNREVIMGFGLEPTPTVSAPGQPVKTAIKLPHREQSLLTMLTT
VFSFLNASAPQTTSDCWLCLNPQPPYYVGIGAQGFLSPSVSPNALYITMITDAEAKVQCKWGHEPILTLGDLQGNGTCFM
ESGVDLSHSFLAPHCVSSVTAPNVDSYENWYWKAPPGTWFACTSGLTPCLSPHTLRTKDAAGDPVICILVHIIPQVYYYS
GEGGREHFEGMQTSEYLMGLIRLRRVPILIPILVGLGIGGTAALSTAALVQGNQNFQSLSNQIDSDLSGLETSINFLEKS
LSSLAEMVLQNRRGLDLLFFKQGGLCVALGESCCFYANHSGIIQESLALLRGRIQEREQINAQSSNWYSSLFSWSPWLTT
LITAMAGPLILVIVGLLIGPCLINCLMTYIxQRLQAIKLLALRSQF
>ERV27_MD_pol#LTR/ERV1 2388-5733 via tfasty with ERV10_MD_pol, 4 frameshifts and 2 stopcodons. Consensus has internal deletion (ca 80 AA). [Didelphidae]
MKTDGGVSGPLPESWVMANIEGKPLPMLVDTGAEHSVLTVPLGKLSSKKSWVQGVAGANQYPWTSSHTVNLGTRQVTHSF
LVIPDSPAPLLGRDLLHKIGAHIQFTAGRVKVTDAPGPPCSLTLSLQDEHRLFSQPTGGIPLHVLPWMQKFPTVWAEHSG
VGLTINQAPIVITLKSGATPVRVKQYPMSLEARRGIQPHITHLLKAGILTTCQSPWNTPLLPVKKPGGTDYRPVQDLREV
NKRIEDMHPTVPNPYMLLSNIHPSLIWYTTLDLKDAFFTLALAPISQPIFTFEWFSPDIQSTVKLTWTRLPQGLKLSPSL
FSEALAKDLRPFREQNPGVTLLQYVDDLLIAAPTEDSCKVATSSLLRCLDLAGYKVSAKKAHIARAEVSFLGYRLQDGLR
WLTPEMTQTILSIPTPSNPRQVREFLGSVGYCRLWIPGFASIAKPLYEATREGPSWTWTPDMDKAFQCLHTAMLEALALA
LPNPDKSFQLFVADTRGVAKGVLTQKLGPWDRPVAYLSKHLDPVAAGWPVCLRIIAGVALLVKDADKLTHGQPLVIATSH
AVESILRQPPARWISHARLIHYQSLLLDEGHLSFRVVATLNPATLLPAESGTGPVHSCQEVLVESISARPDLKDTPLPNS
DFVLFMDGSSFVTPTGxRAGAAVVNDAGKILWCASLPTGTSAQRAELVALTMALRLAKGKRLTVYTNSQYAFATLHVHAP
IYRExGYVTSAGKPVSHLRDIQELLAAVWEPKAVAVVHTPGHQPGTTLEATGNRQADEAAREAALRAPLYELALATDPSR
LGSTDTCIPAPPLDPPQYSSADLDWVKAKSGRLSGTLYKDPDGNLLLPQAMGQLLSTHLHHLTHMGATKLRTLLWKGQIR
FRGSNVFLDELVQKCKTCQLTRVAKRDAHPGTRLHGTRPCEHWEVDFTEVKPGKYGYRYLLVFVDTFSGWPEAFHTKTKT
AQIVVKKILEEIIPRFGGPFSLSPYEILYGSVPPILSSFPAPAGHQAPTLRNLVLSLSQLQQDLWPCLQARFQPPPHDPH
PFQPGGRVKRHQKHALQARWKGPFIVLFVTPSALKVDGIGPWVHHSHVRPAQPPSPDTWRSSHHPTNPLKLHLTKS
>ERV37_MD_gag#LTR/ERV1 312-2405 via tfasty with MdoERV3_gag, 2 frameshifts. ERV37_MD_pol >91% identical to MdoERV3_pol [Monodelphis]
MESQTVQNLVNNWSFSKYFVLFLVQALVCSLLNSWLISPMTNLINTEFLVSLKGLIPWNLWQNLINILLSLEFLIVVILI
LYFLEELNSQSNQPIAPSNIQQIEELNTRQELIEESQGEIVTFIRSINRELRTLSESLSHPALDTAPPANSALQPLAMDN
NPLNEPTPPPAPLASENPNSNQPTPPTTHASDPTQSTLSSHPTHTSDLNPSTSHLTDSSNPNTSVSFHTSSLAPPSHPTQ
STLSSHSNLNSHPTSEFSGTMGQQQTLPFNVPNSSISQTYPIENGARSLETGVPNNLDSLFPLREVPTFNKNGNLVSVRH
HTPFTPEDLKKLKEDMPSFEDEPILIIKKLENIFRTFDPTWLDVENILEALLTKREKNNIVSLANQKRGRRGHYWPTEDP
HWNPNVELDYTKLNQAREALLTAMRACSDRPEKWSKFEKTRQHIDETPSQFMDRLIDVGNTYMDLDLSRERDIRQIRRQF
VKNCCSVVKDYFENSSCPNWDSMDLDELRRVATYVYKGRVKRPEEDDTSVEDLKKEIEMLKRQLKNKGETIAPLREFTNK
SVTCHFCEKKGHKMMECRTFLKMIGRNTQFNNSFRNNNYRNDDNGHRNQNNYNDDNGHRNQNFRNSRNYNDDYGNNYNEH
RNKNFRNQNYRNRNWENNDNAPNEENDNTQQQNIRNGARPKNSRGALQGGAQGISQTQ
>ERV31_MD_gag#LTR/ERV1 198-1632 via tfasty with MdoERV2_gag, 2 frameshifts and 2 stopcodons.  [Didelphinae]
MQTNEAQMEVLKRSLPGLQIQQEDPSPPIPQREDPSPPVPQVEFLLSRLVQLLATLSSPAPSPSAPPSPAPCPSPQPCPS
PDPAPPPPPTPTPPCTFSVSTQTSTKKTRTANESYEFLFPLREVPTLRTNGNVVTLRHHTPFTPQDIKKFKQNVPSFEDE
PIVVIKTLDNIFHTYDPAYQDVQNLLQAFLTEWEKGKIISTVNRARGRNVVHWPEHDPKWNINDEDEYLQLCHAREALLK
AMxECSDRPGTWTKFENLKQLEDESPSQFMDRLIELGGRYIDLDLTKERDVWQIRRQFVNNCSKVVQEYFKTNCPNWPNM
DLEELCRVAVYVSKGHEQKNVETNDLVAELWKELKTLTERLDKQEKGGQAVAIAPLQESTHQSLICHFCAKRGHIMMNCR
NWKQAIWNNNxNNNNYRNPNNYGNNTPHPNPNQANDNSHHQQQYIQSGARPRYTQGETAPQPRGAQGNPQNTPNTQRSL
>HERVL66_env#LTR/ERV1 3059-4307 via tfasty with CarERV2_env, 1 frameshift. (ERV1 env with ERVL pol) [Primates]
LLLQGITYLLVVSTCVFVSEAENEFINWVATAATEANRSQCWLCVELPEAAGNGLPWRIVPANISEWLCRYQWGHNNNTC
NPTWTSFDQTKQSIFAQVRQKANSTLALHQKPWYPAQYSWNGIYWDLLCWWLDSIQPPLCLEALNGSSNVTLGFLPPDNC
QHILQINNIAPNETQSLSYFNNTLIHYDYSSSIAVPWGALWVCRSYGWRYLPPHWTGRCTWGWPLIPFTIRDNIPLPSNL
DAYKHRWLRMRRTPWWWYPITVFSPAAGTILLQQQIKILSLHVEKALNDSSTGLMLLSDEFAQLRTVVLQNRMALDMLTA
AQGGVCALLHTECCVYIPGNSHNITLLAQAMQGQVKQLESNHQDPIMDWLSNWHWRWPWWVWFLLIVLLILLCLPCICNL
YQLCLPHVSVRVFSYN
>TguERV1_env#LTR/ERV1 7571-9685 [Estrildidae]
QRAEVEAHLQQRINGPIEIMDMMEKVVTIITIATVVTGANTIPHKYNVTGIYQCQGRAYDPHSRRALNEIIKVTNARLWE
GRNVWGCNYAFVQDGFHEAYQPPMKLIRISPECCDKCLSRCPEFRLKLEGCAIRGYDLDFNITQVCVEYHKNRTRTTPPI
QKKAITTPQPLIPEVEEQPIAPTITKIGPYAIKKTGIQRLLVNPEWSLKRVEMGIQVNASDVRPECAPFLRNPFMDWATW
LQKQMPSNFKSKRDLTGLLGTGLGVLNTIDSEVLMNKLTTVGNDLVKLQQPLQSSLLALGDNHWKLSKVLPEWENTEERD
HELIINALGTASENVSLALGCTQAQLWMQSVAAAVIREGGEGIFPAELRKIVWDSASDIERELQAWWTLVNFTYNPMTSK
VTAFVLTIHNASVSLIHPIVPLGLNHEGTVLYPSEHRTWAREIRGKWQTINLEPCSMRRQLGYICEGTLESNKDTCLDTD
QSICHFETHSGNQTTLLVYVGQGCVCLRTACPTIMIDNLSMNETQFNLCVCNFVKIEGCDFSYQAPVVSHQYIKANLITV
QEIVPVPIGMNLTLVAQLLKHQELREILKEIRDAGKKTLITIHHDTETIKGVFKRFEEHLSHHWWDVLFGWSPTATGILN
TLIHPIIVLLILVSISLILSVVILVWNWKMIRRMTALTSLSKAYGLVLKETRHMSWADEERSIY
>RNERV19_pol#LTR/ERV1 2232-5813 [Rattus]
SRGSYSLPEPRVTLDVEGTPVDFLVDTGAEFSVLQHPLGKLXDKTSMVVGATGMKIHKWTTARRVNLGAGRVSHSFLVVP
ECPTPLLXRDLLTKMNAEIQFXPXGPRVKWHPPRPVWTLTFNLADEYRIHEKGKKMDNPQWWLXRFPEAWAEXGGVGMAS
QXPPIVIAVKSGATPISVRQYPMSKEAREGIRPHINKFLQLGILTPCRSPWNTPLLPVKKPGTRDYRPVQDLREVNKRVE
DVHPIVPNPYTLLSTLPPERIWYTVLDLKDAFFSLRLHPTSQHLFAFEWKDPETGHSGQLTWTRLPQGFKNSPTLFDEAL
HRDLTIFRTNNPQLTLLQYVDDLLLGAETQGECQKGTEQLLSELGRLGYRASAKKAQLCRTEVTYLGYILRDXKRWLTEA
RKKTVLQIPAPQTPRQVREFLGTAGFCRLWIPGFAALAAPLHXLTRSETEFQWKPEHQAAFDAIKRALLTAPALVLXDLT
KPFTLFVDERAGVAKGVLTQTLGPWKRPVAYLSKKLDPVASGWPSCLKIIAAVATLVKDSDKLTLGQPVTIIAPHALESV
IRQPXDRWITNARLTHYQSLLLNDRVXFGAPVILNPATLLXEATXQNPIHVCADILAEASGAREDLXDVPLPGCPSWFTD
GSSFLVEGKRRXGAAVVDGKRTIWSSGLPEGTSAQKXELIALTQALRLAEGKNINIYTDSRYAFATAHXHGAIYRQRGLL
TSTGKEVKNKDEILSLLEAVHLPRKVAIIHCPGHQGGQDAVAKGNRMADATAKQAALGAVILXVVGKELPPNLRDSSFQY
TXEELEEFHXXDWXQGFSPYGVAETTDGKQVLPDQQGREFIANLHRLTHLGTRKLIELVKSSEYHVQRLPDXAQEVVQSC
QACALVNSNRPPSLHGKRLRGDRPGAHWEIDFTEITPARYGNKYLLVFVDTFSGWVEAFPTRSETAQVVAKKILEEIFPR
FGLPKVIGSDNGPAFVAQVSQGLASQLGINWKLHCAYRPQSSGQVERMNRTLKETLTKLALETGGKDWTALLPFALFRAR
NTPGRFKLTPYEILWGSPPPIGEAGGVHDPDPPLSQPLLTRLRALEIVRRQVWDLLKETYRTESPEIPHGFQVGDLVLVR
RHRAGNLEPRWKGPYSVLLTTPTAIKVDGIAAWIHASHAKRAPKTPEDEWTVERTPHPLKLRLRRRLVPGEDIE
>TguERV3_pol#LTR/ERV1 3502-7032 [Estrildidae]
GGPEETTPAGPLVVNLKLGEMEKEVKFLVDTGATYSVLNTALMPIGDDYAIVTGATGQTEKAFFFRPLKYKLGKQWGIHK
FLYMPNSPEPLLGRDLLGQLQATITFKNGEMTLEVNDQKYVEVLSLILTTSEVTRETEIDEEIMNQVFPGVWASDVPGRA
KNAPPIQIRLKEGKQPVRVKQYPLRREDKEGISPVIENFLRLGLLKECQSDFNTPILPVRKPDGSYRLVQDLRAVNKVTE
DLYPVVANPYTLLTCLTPELTWFTVLDLKDAFFCLPIHEASQKIFAFEWESPKSGRRTQLTWTRLPQGFKNSPTLFGEQL
AKELETWEAPPEEGKLLQYVDDILIATRTREACVAWTVSLLNFLGLQGYRVSKKKAQVVKQKVTYLGYEVSAGQRTLGQS
RKEAICQTPKPQTVKELRTFLGMTGWCRLWIYNYGLFVKPLYELIATESRDIQWTKEATQAFNQLKKALMSAPALGLPDV
SKPFLLLSHEKQGIALGILAQDLGPYRRAVAYFSKQLDAAAKGWPGCLRAVAAVVLNIQEARKFTLGQKMTVLVSHTVSA
VLEVKGGHWLSPQRFLRYQAIMVEQDDVEIVVTNIVNPASFLSGNQGEPVEHDCLETIEATYSSRPDLKDTPLENAEVWF
TDGSSYVVSGKQHAGYAITTCKEVIESGPLPTNTSAQKAEIVALTRALELAKGKEINIYTDSKYAFGVVHAHGAIWKERG
LLNSQGKNIKHASEILRLLEAVQLPEKVAIMHIKAHQKINSELEEGNELADREAKEAAKIEVITEAALIPDGQISLEGKP
KYNKLDKKLIHEQKGDYNQEGWATIEGKLVIPSYLLWSLIREEHQKTHWGIDALYKYLNERIIARHLRATITQVTRQCDL
CLQTNPKNIPKPKLGQTGKGHGPGQQWQIDFTELPRKGGYKFLLVLTDTFSGWPEAFPTRTSKAREVTKVLVQEIIPRFG
VPATISSDRGPHFIAKLVQQVSQYLGIDWELHTPYNPQSSGQVEKMNHLIKQQIVRLGQEANLPWPQSLPLALLRIRTKP
RTKEKLSPFELLYGRPYGVQKGTSAQDVSLTSYMIALNKQLRAIEKYVAGTRGTGLDAPVHDVQPGDYVCVKSLTEKALE
PQWEGPYQVLLTTFTAIKIKEQNAWIHHSRVKKAPEATWRITPGDGELKLKFTRTK
>TguERV4_pol#LTR/ERV1 2047-5670 [Taeniopygia]
GCQGLYLLGTRERTEPLVKLKIGPQQQEYEFLVDSGAERSTVQTLPLGCKISSEIIQVIGAKGEPFGVPIIKDVLLESNS
KLGIGSFLLVPEADYNLLGRDLMIELGIGIEISEGELTVKLCPLRAEDEKKINPEVWYTPDSVGKLNIEPFEVTIRNPEI
PVRIRQYPISKEGRQGLKPEIERLLEKGLLEPCMSPFNTPILPVKKPNGSYRLVHDLREINKRTVERFPVVANPHTLLSQ
LGPENQWYSVIDLKDAFWACPLKETSRDYFAFEWEDPDTHRKQQLRWTVLPQGFTESPNLFGQALEQVLEGYSLGEGMVL
LQYVDDLLIAGKEEKKVREESIKLLNYLSLKGLKVSKSKLQFVEEEVKYLGHWLTRGTKKLDTDRIQGILSLQAPQNKRQ
VRQLLGLFGYCRQWIENFSGKVKFLYEKLTNDGLLKWSTNDEDQLEALKTELVNAPVLSIPDLKRSFYLFICANEGVAYG
VLAQDWAGKKKPVAYLSKLLDPVSRGWPTCLQAIVAAALLVEEAGKITFGSELKVLSPHNIRGVLQQKADKWIMDARLLR
YEGILVSSPKLSIETTSLQNPAQFLYGEPITELTHDCLQQIEEQTKIRPDLEEEELEEGTRLYVDGSSRVLEGKRKSGYA
IIDGKTFKTAESGPLSPSWSAQACELYAVLRALKLLEGKSGTIFTDSKYAYGVVHTFGKIWEERGLINSQGKGLVHKELI
RQVLQALRGPEKIAIVHVKGHQAGIGNSIRGNNLADQEAKRAALMNLKPWTGLVTRREDCSTCGADLEDPPCWVCWKYYG
IDSIKCACDTPRKKHCWFHGPIDYILAFTVQEKEKLGQMGIREKEEGKWVLPDGREVLPKGMAMRVLQAIHEKTHWGTQA
LVDQFAIKYMCIGVYNLAKQVTQQCLTCQKVNKQQLRERPMGGRELAQRPFSHIQVDFTELPKVGRYKYLLVLVDHLTHY
VEAYPTARATSNTVVKVLLEQIIPRYGLIEYLDSDRGPHFTSKIAKDVLTALGTQWKYHTPWHPQSSGRVERMNGEIKKQ
LTKLMLETKMSWVKCLPLALLNIRTQPRTDVGISPFEMLFGMPYDMEAPTDHPCLKDSQIKHYIIQIMSRRQELREKGML
TQRPPLDITIHKIKPGDNVLIKSWKENSLTPRWEGPFVVLLTTGTAIRTAEKGWTHASRVKGPITTDDQWKVTSLPGDLK
VTIKKNR
>TguERV4_gag#LTR/ERV1 448-2046 [Taeniopygia]
MGQRKSKPAEPMGGGIPVKLPHISEDSPLGLMIKYWNAFPSRKGKDKVKMAHYCMEVWGGKQIRGDQLYWPVFGSSEDWI
CQALNIYVNSKEPFNLEESEYAALWIRGETRAKLFALNTERKKKRSKEIELPPGIPPPYIPPPPPPLPLPPPPPQLLDPS
LPEPLLIDHPGPSAPTQELSEDEGPEGERLEENIPEGSRRVTRSQTRQKGKQELGIFPLREHGMGMVPNPNAAQPGQPAP
ILGIGYISVPLNSGDVREFKKEMGHLLEDPLGVAERLDQFLGPNIYTWEEMQSMLGILFSAEERRMIREMGMRIWDDEHQ
QGPLADTKWPLHNPQWNNQDPLHRTHMGDLRNIIIQGIRKAVPRGQNVQKAFKEQQKKDEDPTEWLERLRKAFQLYSGVD
PNTPEGETLLKVHFVVNSWVDIRKKLEKLEGWQARGLDELLREAQKVYVRREDENYKKQSKIMLAAVREGQRQSPLRRGG
GHPGGLKGAGRQVHEGRQGRGDRTVCFYCGKKGHMKRECRQRMADEKQFKED
>PERV-C_env#LTR/ERV1 gi|15278247|gb|AAK94077.1|AF402662_1 envelope protein [Porcine endogenous type C retrovirus]
MHPTLSRRHLPIRGGKPKRLKIPLSFASIAWFLTLSITSQTNGMRIGDSLNSHKPLSLTWLITDSGTGININNTQGEAPL
GTWWPDLYVCLRSVIPSLTSPPDILHAHGFYVCPGPPNNGKHCGNPRDFFCKQWNCVTSNDGYWKWPTSQQDRVSFSYVN
TYTSSGQFNYLTWIRTGSPKCSPSDLDYLKISFTEKGKQENILKWVNGMSWGMVYYGGSGKQPGSILTIRLKINQLEPPM
AIGPNTVLTGQRPPTQGPGPSSNITSGSDPTESSSTTKMGAKLFSLIQGAFQALNSTTPEATSSCWLCLALGPPYYEGMA
RRGKFNVTKEHRDQCTWGSQNKLTLTEVSGKGTCIGKVPPSHQHLCNHTEAFNQTSESQYLVPGYDRWWACNTGLTPCVS
TLVFNQTKDFCIMVQIVPRVYYYPEKAILDEYDYRNHRQKREPISLTLAVMLGLGVAAGVGTGTAALVTGPQQLETGLSN
LHRIVTEDLQALEKSVSNLEESLTSLSEVVLQNRRGLDLLFLKEGGLCVALKEECCFYVDHSGAIRDSMNKLRERLEKRR
REKETTQGWFEGWFNRSPWLATLLSALTGPLIVLLLLLTVGPCIINKLIAFIRERISAVQIMVLRQQYQSPSSREAGR
>MacERV1_gag#LTR/ERV1 372-1910 [Cercopithecidae]
MGNTQSTPLSLLTSNFKDVRARGHDLSMEIRKGKLITLCRSEWPAFDVGWPPEGTFRLPVITRVKSKIFLPGRAGHLDQI
PYILIWQDLVENPPPWLSPFQLAPEPCKALVARPLKSKQPTAPPILFYLIAGTHCPQNPLRTPPGPRPQPPGLSRGKEQA
DGRRPAHPDPLKVKVTLKGRRGGREGALCGLAPPQPPDSTVALPLREIGPPDDTGIPRLQYWPFSTSDLYNWKTQSARFS
DNPKDLMALLDSVMFTHQPTWDDCQQLLRILFTTEERERIQVEARKLVPGDDGQPTANPDLINATFPLTRPAWDYNTAEG
RGRLHLYRQTLMAGLRAAARKPTNLAKVYSVLQGKTESPATYLERLMEAFRQYTPIDPEAPGSQAAVVMSFVNQAAPDIK
RKLQKLEDLEGKQIQDLLQIAQRVYNNRDTPEEKQFKATEKMTKVLAAVVQKEHLQPENTQPRRSPRHDNLSKDQCAYCK
EAGHWVRDCPKKKQRGQGPPRSTPVLVTQDED
>HERVS71_gag#LTR/ERV1 1878-3433 via tfasty with KORV_gag, 1 frameshift and 1 stopcodon.  [Primates]
MGNTSSRPRKXWSPLQCMLXXFSLGFSEDYGVRLRKGKLRTLCEXEWPKFGVGWPPEGSLNPXIVQAVWRVVTGTPGHPD
QFXYIDQWLSLVRNPPPWLRSCAIHNSTSKVLLSQAAFLPRPSAGSAPPVLPPSEEEESLPHPVPPPYNQPAPLAXSRVS
STTSPVGxPPVASRLRPRQEEAAPLXPLREAQVPPXDERSAPFLVYVPFSTSDLYNWKXHNPPFSEKPQALTSLTESVLR
THRPTWDDCQQLLLTLFTSEEREHIQREARKHFLASAGRXEEEARDLXEEVFPSTRPNWDPNSSGGRRALDDFHRYLLAG
IKRAAWKPINLSKTTEVVQGPDESPGAFLERLQEAYRIYTPFDPAAPENSRALNLAFVAQAAPDIRRKLQKLEGFAGMNI
SQLLEIAQKVFXNREFEKQKQATQAAEKAADKXXKRQAKILVAAIQEGRKERPPFQXIGQGXSGSRQKSXRGEQAPLGKD
QCAYCKQTGHWKKECPLLPKEKSENKKVLTLPATEEPDD
>MER66_gag#LTR/ERV1 1355-2900 via tfasty with HERVFH19_gag, 5 frameshifts and 4 stopcodons.  [Eutheria]
MGTTMSIPEDSPLGCLLGNWSKFKFSLEKKKLIFYCNTVWVQYKLENQQIWPRHGSLHYNDILQLDLFCKKEGKWEEVPY
VQAFMALYQDPDLRDSCRMCGSxYFQAQEATPDMPKGPPPSCSPxNAYALPSEPPQSPSSERGPTSSLIQDSTPRSSGTP
PPYPTSPGLYPPLPKEVSPTSTTRSGAPYQPLKSNLCPLREVADGNRRTXRVYVPFSMSDLALCKEKFGQFSEDPGKFIE
EFVKLTMSFDLTWHDLQILLSACCTVEEKQRILGTAHEHADGVAVCNPGHAIYCVGGDAVPDLXLKWDYQRGFQDLECRN
HILTCLVEGKKKCVVKPVNYDKVREITRGKDENPALFQGRLVEALRKYTNTDPDSPEGRALLGMHFITQSAPDIRRKLQK
AAMGPQTPVSQLLNMACWVYNNRDRAEKRRKQKKxPKSAIVSGCFRPPAASGLPTSRKCREIGVxDAQXRAPHXPAPGPK
SCAFCKQEGHWKKDCPNRPQ
>MMERGLN_gag#LTR/ERV1 526-2129 via tfasty with FMLV_gag, 2 frameshifts and 1 stopcodon.  [Mus mouse genus]
MGQTVSTPLSLTKDHWTDIRARGQNLSVKVKKKPWMTFCSSEWPVFGVGWPAEGTFYLPTIRAVKAIVFQEGPGSHPDQQ
PYFMVWEDLARYPPPWVHPFLPPLHPGTKILAIRENGEKEKPKPPLGRDDDHSTPVMKPPKIYPEIETPxVAQTPQPPPY
APQPQPSAPSGPLPQAPAGGGGPSTGTRSRRGVTPEGPADSTVALPLRAIGAPPADPNSLQPLQYWPFSSSDLYNWKANH
PPFSENPAGLTGLVESLMYSHQPTWDDCQQLLQTLFTTEERERILLEARKNVQDEAGRPVQTPAEIDEGFPLTRPRWDYN
TASGRERLSNYRRVLVAGLRGAARQPTNLAKVREVMQGATEPPSVFLERLMEAYRRYTPFDPTSEGQRASVIMAFIGQSA
PDIRKKLQRIEGLQDYTIRDVVREAEKVYHRRETEDEKLEREKREKREDEDRRDRRQEKVLTRILAAVGERDNGRRGRQS
GNLGDKRQQGPRRPREGGQRLERNQCAYCKEMGHWKSNCPEKKTRGKGAFSWRR
>MERV1_gag#LTR/ERV1 436-2045 via tfasty with MDEV_gag, 4 frameshifts. MERV1_pol is in even worse state. [Mus musculus]
IGQTESTPLNILVNHWRENLSVVVKKGKLVTLCFSEWPTFRVGWPPIGTFDLQVIKAVEERVFRPGSLGHSDQVPYIVTW
KNLVETPPTPTWIKAFLSPRPTSQVLAVRKKETREEGSGPEKKSILQDPSTADLLLQDPPPPYPPTLAPMAPPAPAPAPG
SSAHMGPGPLYPPHFTGGRSGRRPQLPGPAMGTRSLRATSPDTTVALPLRAYGPLDKGNQAMQYWPFSSADLYNWKAQHP
HLSDNPKGLINLFETVLFTHQPTWDDIQQLMRVLFTTEERERIMQEARKNVPSDMGAPSIDQAVVDSGFPLTRPDWDFNT
AEGKGHLKVYHQAPLAGLKGAARRPTNLTKVREVKQGPDESPAAFLERLMEAFRQYTPYDPSSKEHKATVTMAFIDQASR
DIRKKLQRLEGLQDKSLRDLVQVAEKVYHNRETEEEKEQRKRKKEDERENEKKEKRQERNLQRILATVVRESREERLQPK
RDRKPLEKDQCAYCKERGHWARECPNKRKPGAGNPRPWEKRPKTANGEGVSPGGRQ
>TguERVK6_pol#LTR/ERVK 4312-7017 [Estrildidae]
MGTEIRIGFLTGVTVALATLKLTWKTNDPVWVDQWPLERKKLSALKKLVQEQLQKGHIKPTDSPRNSPVFVIRKKTSGSW
RLLHDLRKINEVIEDMGPLQLGLPSLSMIPRDWSLVIIDLKDCFFSIPLHPDDAPRFAFSVPSINREEPLQRYHWTVLPQ
GLKNSPTICQWYVAQALHPAREKHPKPKIIHYMDDLLIAAPTKXEVQEVRDCVIAQVQKAGLEISAPKIQEIAPWKYLGW
KISKQTIRPQKLEINTKVTNLQDLQQLLGEINWMRPILGITNDDISSLLDLLRGDNNIKSPRTLTPEARKDLEKITDMIQ
QRQAHRFVESLPFHLAVLGETAQLYGLIFQWDLSQMDPLLLIEWVFLAYRPSKTILTDLEMIAQIIIKARTRLLVMSGRD
FSVIHVPLKKVYFEWAMQKSQDLAIALLGYPGVCTVHFPAHRMLNAKVSFREKPKISQEPVEGMTVFTDGSGKTHKSVVT
WQNPKTGEWESDIKIVQGSPQIVELAAVVRVFQLFQEPLNLITDSAYVANVVKRLEGSLLKHTDNEILYSYLSCMRTILE
NREHKYFVAHIRAHSSLPGFLAEGNAHADRLTMTISQTLPDIFEQAKLSHAFFHQNAQALMESFRLSKSQAREIISACPD
CQLVQPPASTGAVNPRGLQSLQLWQADVTKYPSFGRLKNIHVSVDTFSGAIFASLHTGETAEHACRHFLQAFASLGVPQE
IKTDNGPTYTGKVLDKFLKKWGVKHIFGIPYSPSGQAIIERTHHTLKSLLDKQKRGEAGATPHMRLNKALYVLNFLNGSF
SEPTPPIVRHFTNSTQAKLRENPLVLIRNPESGQIEGPFTLITWGKGFACVSTERGPKWVSARHVKPYRVQTPVDADPRS
REASTQTKADDDAADVTSDND
>SRV-2_gag#LTR/ERVK gi|1730185|sp|P51516|GAG_SRV2 GAG polyprotein (Core polyprotein) Contains: Core protein P10; Core phosphoprotein P18; Core protein P12; Core protein P27; Core protein P14; Core protein P4. [Simian retrovirus 2]
MGQELSQHELYVEQLKKALKTRGVKVKGNDLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKIPVTAF
SYWNLIKDLIDKKEADPQVMAAVTQTEKILKVSSQTDLRDNSHNKDMDLISLESDDEEAKAPSEKMTMSNKSPKKYPAML
ASQNNNTDKDPDLSEVDWDGLEDEAAKYHNPDWPPFLSRPPPYNRTAATAPAVMAVVNPKEELKEKISQLEEQIKLEELH
QSLIIRLQKLKTGNERVTSSGNIESHSRTPKWPGQCLPKGKYLINKNTEEYPPKDIFPVTETMDGQGQAWRHHNGFDFTV
IKELKTAVSQYGATAPYTLAIVESIADNWLTPTDWNTLVRAVLSGGDHLIWKSEFFENCRDTAKRNQQAGNGWDFDMLTG
SGNYANTDAQMQYDPGLFAQIQAAATNAWRKLPVKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGNAEAGVDYVKQ
LAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQTVKDLLNNKNKDRGGCFKCGKKGHFAKDCR
DHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPLPPHQGNGMRGQPQAPKQAYGAVSFVPANSNNPFQNLIEPPQ
EVQDWTSVPPPTQY
>TguERVK8_pro#LTR/ERVK 3269-4083 via tfasty with TguERVK9_pro, 1 frameshift and 1 stopcodon. [Estrildidae]
AIDRLGKRGQKHTGELRADTSDPPEHSTGAGCPCQLDTGIHGSAGVDVHTIAAVILDSTEVHRVPLNAFGPLGHGLGALL
MGQSNTSLLGVFVHPGVVDSDITGQICAMVSTPSPPVVIPAGTRIAQLVPFHSCVPRADQxIRGDGGFESTGPTQVLWSS
LISANHPQMVCSVVLPGASPSRIQLQGLIDTGADVTMVSASVWPPKWPLDSVGVAIEGLGGAAQPFMSQQAVLIKNTEGQ
TAKVRPYVTAAPVTFWGRDVLAAWGVRIGTDF
>CarERVR1_pol#LTR/ERVL 1542-5435 [Carnivora]
DAGQDCLQVRAIGGDRRPHVELTIHWSSRNKQKVTALVDTGAKCTLIHGNPQKFSGPLSAIDGYGGQTVMVRKVPLTLQI
GHSPPREYEVFISPIPENILGTDILQGQTLQTSIGEFRLRVRVIKPVLRGNANWEPVSLPPPRRVVTVKQYKLPGGHKEI
GETIQELHRVGIVRPAHSAFNSPVWPVKKPDGSWRMTVDYRELNKVVPPIHAAVPNIATILDTLATVLGVYHAVLDLANA
FFSIPLAAESQDQFAFMWEGQQWTFQVLPQGYLHSPTICHGMVARDLSLFSFPTSVKWAHYIDDIMLTCEDLPLLQDTLQ
TLLEHLRGRGWAVNPQKIQGPGTAVKFLGVVWSGKMRVVPEAVIDKVQAYPTPKNVKEVQAFVGIWGFXRTFIPHLAQCL
RPLYRLVKKGHVWDWGSEQQAAFEKAKILVKQIKALGISQAGLPFELDVSVTPEGMGWALWQRQQKERVPLGFWSQLWKG
AETRYTPIEQQLLAVYTALLQVEPLTKEQHIVVRTSLPIKGWVENMFHRPTSAMAQTPTLTKWHAYLQQRSTLSASPLSL
EMRVLLGPVEYVDPPNAPAPIPVVAPAACREGAGEIPADAWYTDGSSRGNPPTXTAVAIQPNTDTIWMETGTNHSSQWAE
LRAVWLVITHEPWPLTLCTDSWAVLKGLTLWLGQWEAEGWMIMNKPLWGQDMWKDIWVRLQEPEAVLTVFHVPAHKALTP
PGNQEADALARVRALATDPSVDTADWVHRKSGHRSARVGWHIAKDAGLPLKYSDLVNAVTACPVCSKQCPRQLPKESGAI
HRSSQPVRDWQIDYIGPLPLSEGSKYALVCVDTASGLTQAFPCRRANQAATIRGLEKLSTMYGYPRRIDSDRGSHFKGHD
VQDWAKEHDIEWRFHLPYNPQAAGLVERKNGILKQQIKLLTGKTTLAGWTKVLSQALIHLNDQPVGPVAPYARLGTPAEA
PNTVKVWKSRETAIAPTLTVDQRAMLLRTPSPITPGKGVIYWNLQWDVPPGWVSYFAPLGEGELLNLHWDPIVLLQAGPV
ETHYTWNGTRTIERGEKVGVLVWHIPPPVHLLTPDSAASPGQHVWYAQPGQVPKAANLPLLKARWARSVFHWYDHLAAIF
VPSIGLEDVIAHIEALTKFTQQALNDSRQSLSLLNTEMSLMRKAVLQNRMALDIITASQGGTCAIIQTECCVFIPDESAN
VSSLLNHMRTQVNALSDLTPSLGDLINQWFGSWGSWWKKLSLILGIIVLICVFSCMCLYCCCGICLQCSQIAAKXATSML
VKPLADRSGHIAEEGGM
>TguNERVK10e_gag#LTR/ERVK 434-2461 [Taeniopygia guttata]
MDGDLQASVRLLFHILSKRAEKVKEADLEQLVLWARSKGKLQKPSLIFSEIEWQELGQLLWDAVIEGGEDKKTVLELGGV
WKKVLHTLQSMAAEKKAAEAAVQAFEQPTSEQTEVQKPSRVEKFFNVCNMRPVRGQKAPVSPSVRDFVARLEGSAEPGGA
GPAGARQSRDVAAPGAEVCSQAADVNSSAVPRSEANQEVALPGPSGGGETPEEAGGVGDETGLSQEEELRGGDQGRDQGG
XGSEAALAPRPPAAAAAAAAAGACRRRGAARRYPAAAAAAASSPARLGGAGHPNASGMAEAATQTTPEQSPENASSHSTT
VALRCPLPPSSDSDDSEPDLPVVNCSRDKRSQNKIQRPNMLQKKIARLATLSNRQAQPVEPSTGQQLALPAVLKNPLQSR
WASVVKDALLDGDWKAVSSLACPVIVSNGNAIWEPHDWKILQSAKQTVTTYGIRSEAARNIIQYIFTADVLCPGDSSNIA
SLLLTPSQFLMFEREWRRLAIEEANKHTNVGDPFYGVQPDMLTGQGPYATNQVQLTFPVEMHQLSQQLAHQALLLVPDKK
KSASYATIKQGATEPFGQFIDRLSAALKDAPDVPPDVQEHLFRSLAFENANPXTRTILATLPQGCPVDEMLVRATRAEQS
NQAAAFTATIQDAIQQQGHIIAAALSSNNTRRQKT
>SRV1_pol#LTR/ERVK gi|130670|sp|P04025|POL_SRV1 Pol polyprotein. Contains: Reverse transcriptase/ribonuclease H (RT); Integrase (IN). [Macaca mulatta]
QKGIWKFLTAAIDMLAPQQCAEPITWKSDEPVWVDQWPLTSEKLAAAQQLVQEQLEAGHITESNSPWNTPIFVIKKKSGK
WRLLQDLRAVNATMVLMGALQPGLPSPVAIPQGYLKIIIDLKDCFFSIPLHPSDQKRFAFSLPSTNFKEPMQRFQWKVLP
QRMANSPTLCQKYVATAIHKVRHAWKQMYIIHYMDDILIAGKDGQQVLQCFDQLKQELTIAGLHIAPEKIQLQDPYTYLG
FELNGPKITNQKAVIRKDKLQTLNDFQKLLGDINWLRPYLKLTTADLKPLFDTLKGDSNPNSHRSLSKEALALLDKVETA
IAEQFVTHINYSLPLMFLIFNTALTPTGLFWQNNPIMWVHLPASPKKVLLPYYDAIADLIILGRDHSKKYFGIEPSVIIQ
PYSKSQIDWLMQNTEMWPIACASYVGILDNHYPPNKLIQFCKLHAFIFPQIISKTPLNNALLVFTDGSSTGMAAYTLADT
TIKFQTNLNSAQLVELQALIAVLSAFPNQPLNIYTDSAYLAHSIPLLETVAQIKHISETAKLFLQCQQLIYNRSIPFYIG
HVRAHSGLPGPIAHGNQKADLATKTVASNINTNLESAQNAHTLHHLNAQTLKLMFNIPREQARQIVRQCPICATYLPVPH
LGVNPRGLLPNMIWQMDVTHYSEFGNLKYIHVSIDTFSGFLLATLQTGETTKHVITHLLHCFSIIGLPKQIKTDNGPGYT
SKNFQEFCSTLQIKHVTGIPYNPQGQGIVERAHLSLKTTIEKIKKGEWYPTKGTPRNILNHALFILNFLNLDDQNHSAAD
RFWHSNPRKQFAMVKWKDPLDNTWPWPDPVIIWGRGSVCVYSQTHDAARWLPERLVKQIPNNNQSRE
>PyERV_pol#LTR/ERVK gi|26006405|gb|AAN77283.1| Gag-Pro-Pol protein (envelope is ERV1, pol is ERVK) [Python molurus endogenous retrovirus]
MAVSAVLRLELQSQTPVWIDQWPLTVEKLTVLKQLVNEQLDNGHLEPSLSPYNTPVFVIKKKSGKWRLLHDLRAVNAIIK
PMGALQCGLPNPNLIPQSYDMMIIDLKDCFFSIPLHPKDKHIFAFTVPALNNSQPTSRYQWKVLPQGMLNSPTMCQYFVS
QVLQPYRDKYSSFLVYHYMDGILVATPGPKGTVLKTLPHLQRILQQGGLHIAPDKVQLSSPFHYLGHKVLESHANPCLPN
IQLPPAPTLLQLQQYLGSINWIRPYIGLSTIQLSPLFTALTKGKQPADVIPLQKEQLDAVKLINQALRTKWVDRMKDNLP
FSLLLLNTLTLPTGAVVQVTPSLLILEWIHLSHTPRATLTTKPAQFASLITKGRLRSKALAGVEPSVIYVPCSLSTWESL
LAVSDHLQFALADWPGTVSCHPPPDPRVQLLRTTPFIWQTPMSPFPIHDAVTVFADGSKKSGACAWQIDGQWHTKTTPPQ
SSAQRAELYASILAFEAFPHQSFNLILDSFYVSQIISSIYQAYLSPSIEPTLLSLFLSLQHLISKRTHFFHVAHIRSHQP
FPGILQEGNSVADAAAAAASSSPLIFAFSSPTPWESHSYFHQNKKALIKQFKISATEATAILQQCPTCSKQAHSVPMGVN
PRGTECNQIWQMNVTQYASFSPWKYLHVSIDTYSGFIMATPQRDEASKRIINHCIRTFATLGRPKELKTDNGPGYTGSAF
AAFCQKWGITHKFGIPYNSKGQAIIGRANQTLKHALDRYIETKGKGPPSLPAVQDILNLCLYTLNFLNLTGLPATSAACR
HFASQPAADHQRPLVYYRCLPDPAWRGPAQLITWGRGYAAIQLPDKVLWVPGRCVRPCHLPLSPDAQDVPPPPHIRGLTG
VTPEADPQHTAEEEDSRDNRR
>PlatERVK2b_env#LTR/ERVK 5033-6977 [Ornithorhynchus]
MLQLLLLLSLGGGVGAVPGPAGGHQVTRTGLVDSTLLAQEEASGEWRWALVPHPPVVRLVSWREDSPDLIPWGNTSKLTG
QPRDTRQDRGGEXVALRNVTLRGLGLPICFYDASRNVSASVRRYRLALRSWTVTQTVTIPRGEGHPTHRNLTMMGLHGGL
RCTWPRLNVTVADHSEGKFGPIRNSSLIHSLFHPLRRCAEGRVGVWVPLTRCSTGIFRCVVLGDNVTTLVTWDNPIRNHS
YSEAAAPVLFASPAGTQHPXLWKAFATLRTMNVTARSCPCEGTCQDYPYRVWRAVFREGLNVTLESAPENCTDYRYHFTX
RISVPSPYAFLHCRLGSNRSVEVSATRASDSDYALFASDCDLXXDSPGQGRGRGIVTFLVRRPGYLLVPVRSAHPWFSSL
SERNWYHVSQWXKRPRRELFEAVLGIANLAFSAFQEWQIQNLFDGMGYLGSQLQAFMHSTRQAFAVQQRLDVSLQQEVVG
LERVLEMLGDEVRLLSLRQEVQCDYRYRHVCVLSLVCNATNSSFPGDWLSVKRHLEGLFLAANVSSELQELRLLVDELRA
RELNFTLSGPAEDPVAALTSWLSHLAPGGLPPWLWHVVTAAGLFLLCLLCLPCLVRLILWFLRRAVRDVETELFALRVRR
PCAVPA
>RMER16_pol#LTR/ERVK 1513-3894 via tfasty with SRV-2_pol, 6 frameshifts and 4 stopcodons.  [Muridae]
NSHIFVIKKKSGRWRLLQGLxRVDEAMELVEALQPGLPTPAAIPGNAYRIIMDLEDCSYTIPLHPDDCKGFAFSELACNF
KEPMKRYHWKVLPQGMANSPTLCKKFVAASIQEVRTLNLSVYIIHYMDSILLADPSEGVLLQAFALIQQALNFGVVVAPE
KIQRQYLFQYLGHQLYPKQIAAQKIQVRKDNLLTLNDFQKLLGDINWLRPHLKLTTGELKPLFDTLKGDANPNSPRQLTD
EGRIALQKVEEAISQQQIHYIDYDQLLAACIIATTHVPTAVLWQKGPLMWIHLSSSPKKVLTPYYEAVAVLIQNCRIESW
KYFGKEPDEIFIPYSKQQLNWLLQNTDIWPIACANFSGKIDNHYPKDKLLQFASMHAFVFPVNLRMQPIENALTVFTDGS
SNGKAAYVIGSHVHSLEFPPASAQIIELRAVAAVFEMLKNQAFNLYTDSQYIAHGLQLLETVPFLDTANSQILQLFMQIQ
LNLRERXVPYFVGHLRAHTGLPGPLSEGNATADLYTRKVIGLTQEQLAKQSHSLHHQNSNSLRQQFGISRECAXQIVKTC
PECPQFLPVPHNGVNPRGLIPNQLWQMDVTHISDFGKLKYVHVTIDTFSGFLVATALTGEATKNVISHCLYCFSMLXVPN
QIKTDNGTGYYSQAFETFCRQFNITHITGIPYNPQGQSIEKRYCGTLKQYLHKIKKGELYPRTPQIYLNHVLFILNFKNL
DAKELSECLWHPTTRHTYAxVKWKDPHTGTWHGPDQVLIWGRGHVCVFSQDAEGACxLPExLVRHADAGTKN
>SMRV-H_pol#LTR/ERVK gi|74617|pir||GNLJHD pol polyprotein - SMRV-H  (SMRV-HLB) [Squirrel monkey retrovirus]
DSTKIYRSRAIDIPVPHADKISWKITDPVWVDQWPLTYEKTLAAIALVQEQLAAGHIEPTNSPWNTPIFIIKKKSGSWRL
LQDLRAVNKVMVPMGALQPGLPSPVAIPLNYHKIVIDLKDCFFTIPLHPEDRPYFAFSVPQINFQSPMPRYQWKVLPQGM
ANSPTLCQKFVAAAIAPVRSQWPEAYILHYMDDILLACDSAEAAKACYAHIISCLTSYGLKIAPDKVQVSEPFSYLGFEL
HHQQVFTPRVCLKTDHLKTLNDFQKLLGDIQWLRPYLKLPTSALVPLNNILKGDPNPLSVRALTPEAKQSLALINKAIQN
QSVQQISYNLPLVLLLLPTPHTPTAVFWQPNGTDPTKNGSPLLWLHLPASPSKVLLTYPSLLAMLIIKGRYTGRQLFGRD
PHSIIIPYTQDQLTWLLQTSDEWAIALSSFTGDIDNHYPSDPVIQFAKLHQFIFPKITKCAPIPQATLVFTDGSSNGIAA
YVIDNQPISIKSPYLSAQLVELYAILQVFTVLAHQPFNLYTDSAYIAQSVPLLETVPFIKSSTNATPLFSKLQQLILNRQ
HPFFIGHLRAHLNLPGPLAEGNALADAATQIFPIISDPIHEATQAHTLHHLNAHTLRLLYKITREQARDIVKACKQCVVA
TPVPHLGVNPRGLVPNAIWQMDVTHFTPFGKQRFVHVTVDTFSGFILATPQTGEASKNVISHVIHCLATIGKPHTIKTDN
GPGYTGKNFQDFCQKLQIKHVTGIPYNPQGQGVVERAHQTLKNALNRLARSPLGFSMQQPRNLLSHALFQLNFLQLDSQG
RSAADRLWHPQTSQQHATVMWRDPLTSVWKGPDPVLIWGRGSACIYDQKEDGPRWLPERLIRHINNQTAPLCDRPSNPNT
APGPKGSP
>RNERVK8_pol#LTR/ERVK 2959-5580 [Rattus]
KRQDGSGFFLGAIEGGIPITWKTEEHVWIPQWPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTPIFVIKKKSEKWRLLH
DLRAINSQMQIMGPIQRGLPLLSSIPDDWPIIIIDIKDCFFSIPLAPQDSVRFAFTLPSMNNEEPDKRYQWVVLPQGMAN
SPTMCQLYVGQALQPVRDQFPKLRIIHFMDDILLSAKDCGTLEAAYAKVVKVLENNQLFIAPEKVQMGQMGEYLGTKITP
HSISPQKIELRKDHLKTLNDFQKLLGSINWIRPYIKMPNVDLQPLYEILKGDSQLTSPRALTKEARLSLRKVEERLEKAM
LRRYKEKEDLLLCILRTFRQPTGVLWQQGPLLWIYPHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTAT
QVETLCALIDDWAILRCSFDGEFDNHYPKDPLLQFFTEHPVIFPKVTASEPLSGALDIYTDGSKTGVGAYMVDSQEPVLI
QYSPGTPQITECKIVLEVFKRFHDSFNLISDSAYVVNAVRSLEIAGPIRSTSTVCQILLELQXLIWARKNKFFIQHIRAH
TNLPGPMTSNNALVDASTRREFIFHAAPVDLAREFHQKFHVPAFTLQQKFKISRAAARDVVLXCQNCVQFHHPPQVGINP
RGLIPLKLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEAWAAWGKPDSLKTDNGPAYTAKSFQ
AFCQTMQVKHTTGLPYNPQGQGIVERAHRTLKELXQKQKEGIASGRTPKEQLSLALFTLNFLILDAHGRSAADRHAATTP
MTNAEVKWKDVLTDEWCGPDPVISRSRGAVCVFPQNQENPIWVPERLTRKLPSALPEDETTNPTITTGNGNTG
>ERV3-1_XT_gag#LTR/ERVL 159-1748  [Xenopus (silurana) tropicalis]
MFCWLKNKVRGVDDQTSTLPTWASSGPWTHVARELVKYQQPFQVTNPGHQLLNLDLSRYSKKEQKAAAQVGWLCFQALME
ETIKRESVELELQAVKDQLVVLRECFRSSEKYREEMQTEFSNYVVKTVNKQHRKKGRKSPGNGAKVKVRALVNKGDWGEL
AQLSSADSDEEIEIGDDIEEEELRPIVTTKQRREVTQRAGTDNRDQDYRGSAEAAEQQYTEETRSYTAGELTELGQKFAQ
KGGETILEWVLRVWDLGGDGIMLTSREAIGLGSIAKDPRVRLYLRRARDTTVAFSLLHLIRDSVLQVYDTPTEMMDSTSW
HTIGEGIQRLREYGCVSGLIADPLASAPPNKPTVKETWSGPDMAPFTAHMKNKLLAGSPTHLKAPLFTMLSALDAKQGVI
HEAATLLGQLGELERIGEKVSRHRVIAERGTERLKISRRQLFFDLLQSGVPKPEIDGMPTVDLLKLWKQLKHKGRLKSTQ
PKKVATSDIEDVPVTPSAPPNKGKFNPYREVAEELARHKERSWEVPSPID
>EFV_env#LTR/Foamy gi|9634980|ref|NP_054717.1| Env [Equine foamy virus]
MTPPMTLPEWMQWRYRQNVNKIREAIPDVQIDLPVYNPDMTKPLPLCLRIKYWMYLLCATSPRVMAWLLFVCVLISVMII
AVIVTVFRMQWKAAIDVPGPVLFWNHTDVLTHVPPVGPHVTRLRRAVHLADRAVNINITHIPQGVFLEPFPKPIIDKERV
LGISQIVMIDSGSIAQSMNLDLYMKHLLVDMINEEMVALSNVVLPFELPVGDPSTQDQYIHKRCYQQFAHCYIVWQPGRR
VWPTSEIIQDQCPLPDHPYRPLGYMQQNAYDLYLQPPRYGLQNVNLTSLYGIARIGAYRVLYPEQYNATIFCSDQLYGNW
WYLNRTSEQKEETYRKKMLNLTENNSSILKDRALPPTWTPKGQARLFRELNPLDFCTKPEAVMLLNQSYYTWSLWEGDCY
VYSRNISFPPECINYTRIANKTAHPYACRHWRLLSTNNEGKDEIKCSEYGCLFYPKYDQFELANDFGFLAYQKMFPSPIC
IQNYSLSTEPYKVQSLYQECIQKGTSYDLEDVINQLLRVLQNNGIDLGKVPASRAFTPFYNQMPVSYKKRDVTKRKSCGR
RKRGDNFRKLQTSGLSMNQAISTLAKISDLNDENLAAGIHLLQEHIVTLMEATVHDISMLEAAHGLQILHTHLSTLRLLL
TENRVDWNLIDSTWIQQQLQADEALMNVIRRTARSMTYRVIQQINRPDMTLWELGIYYELIIPKKVWLTNWKIQNIGHLI
KNAGHLARVELQHPYEIVNQDCEQLTYLELKGCQELDYLVCEEILQHEPCGNQTGSDCPVTAQKIKDPYVWIYPLKNGSY
LIMSSHTDCAIPPYEPVLVTVNDTVRCFGTTLKKPLRTSLETFTFQPHIPQLQVRLPHLVGLIAKIKGLKIEITSTWENI
KDQIKRSEAELLRLDLHEGDYAEWTKQLGKALEDIWPAAAQTVSKIGDFLGKIADGIFGTTFSLLTYAKPVIIGIVVIVL
LILIIRILSWLAALGPRRRRREDKGE
>TguERVL-B_gag#LTR/ERVL 122-1909 [Taeniopygia guttata]
MWSSLPWFGWHVVAAVFLPFAGPYLNMGPITKATVAVIQFGLWVNKVRNSWIFNFLWKAGTWIQSYHTLTVCFWGYFNNG
TYCEEMTPGEIFSQPFNHLFGSAPPVFEGLRSTLSANDIIQWVVLLICLFYLALRDKGRLTWITTLTPTPETRDAAAEPD
TAPETGDAAAPEPDPAPQPASEMNHPDWVGVLVKEIREMLKECISPAGEKPXPCLEEGQSNGTAVEPTDVTTVQVPAEPQ
RQSQPAAVAPVETRRSKMKAEHPDRDRNGGTSQPTGEPEVAIITESLTYESLRNLHKDIVRRGREAYTTWLLRVWDLMGT
GVQLDGGEARNLGPLTQDSGMNQIFVREPGSLSLWERLLMSVRERFVHRERMQEHHHRMRWKTLEEGIQQLREVAVLEVL
FGRDGQHDNDPDKVRCTGQMLWSLASLGPSQYTTFIATINADTNRETVGSVANKLRNYESMINGPMQAHVSAVVKELKEE
MREEMRKVNAAPVRVTGPKIRAQRSPARERGYTPRADLWFFLRDHGEDMGRWDGKPTSVLAARVRQLKEGNXNRGSSTKV
KVASTSHDRAAGYDLSDPLEGTSSMYAQERNNNQX
>HFV_bel1#LTR/Foamy gi|9629131|ref|NP_044282.1| bel-1 protein [Human foamy virus]
MDSYEKEESVASTSGIQDLQTLSELVGPENAGEGELTIAEEPEENPRRPRRYTKREVKCVSYHAYKEIEDKHPQHIKLQD
WIPTPEEMSKSLCKRLILCGLYSAEKASEILRMPFTVSWEQSDTDPDCFIVSYTCIFCDAVIHDPMPIRWDPEVGIWVKY
KPLRGIVGSAVFIMHKHQRNCSLVKPSTSRSEGPKPRPRHDPVLRCDMFEKHHKPRQKRPRRRSIDNESCASSSDTMANE
PGSLCTNPLWNPGPLLSGLLEESSNLPNLEVHMSGGPFWEEVYGDSILGPPSGSGEHSVL
>ACCORD_gag#LTR/Gypsy 937-2046 [Drosophila fruit fly genus]
MPKRIPFNTQSKRRLGLRSGGSLPQIREQVEQSTNSNNMDSGNASAPLSPTTSATSTVINTNLNPTDILAFIEQLPTFEG
HPSNLDKFITSAEELLFLIRSVDKTPYGQLLLRAVRNKIVGKADDALTLCDTRLNWDDIKTNLKRLYTSKRTEAMILREI
QTLPNDLTMGKPFYSIIKMRNELITIAKDMDTTGNALATKRTLYDDICLNAFIIGLKDPLRTIIRIRNPDTIEKAYEYGQ
MEQSFFFQNSNRQVEGRRRDNPTDRGRPYPKNNQQEPKLSNNNGRNISHQQTSHQQGGQSMRNQNTSHNYEKPTSTHQQY
RINTNTNVNLCNINDDTNFPQRASEDQSDS
>ACCORD2_gag#LTR/Gypsy 2084-3289 tfasty with ACCORD_gag#LTR/Gypsy 937-2046  [Drosophila fruit fly genus]
MLGKKANISNTVRGRLGLRSESGLSEIREATEPKEKDQSVQSEDNNPTNTMDSGNDTAAISPIVNSSRNTNLSLQQLLTL
VHQLPTYEGPPDNLDRFIDRVDQLLLLASSVDQTTGGKYLLGTIRDKIKGRADEALNVCDVLLTWDDIKINLKRLYSSKK
TEEMLVRELHNLPDGLSMGKLYYSAAKIRSDLMSLAREADPSAHSLAVKRDQYDRFCLNTFLTGLKDPLSSAIRNQRPET
IEKAYEYGQIELNFHRSLNKHQDNRRRDNPFHRNHPYAKGQPTNSDYNNRYIPRQQNYNNGNNARHVPRYDNNSNNNDSR
FIQRQQNFNNNNNRRFTRQHNSHNDSNGRQDRETLGRNPFHNNEQPDQTLSHQNRNKHNPSAPLCNINDDANFLLEASGS
QS
>RMER15_gag#LTR/ERVL 300-1738 via tfasty with GGERVL18_gag, 1 frameshift.  [Muridae]
MWYGVACXLDEWGPPREYGDAPKTAEGLEXILQSLRVAHXXRGCXQAVAXVAWPLLWVIRXAXEAELXVPEGTCLCEGRN
CNKKGEMRLASSALASDLAGKLDKXEDEMEVLACRFLQLGERKEKRVQIRPVLKSPSWDXKTWNPWEXSXSEEERKMVKA
IEDTPRVRPLVERKGKPVIQHADGGLNNGPVQETMVIREYSAPELLELGKTFKQAMKEPXTAWLVRLWDMGADGISLTAV
EAEKLSNVTXHPSLRQRLHNLRQYEGNQSLMDWLXXAIRNTWLXPAEVPINIRDWKTIEEGQALLRELXMREXVFDXQFX
GPDRTVFTEELRKRLIQQGPEGWYGALVALLSPXVGXDLYEVGEALADLSDLDQHVXXVRKVXEQXRGDEKRAKQRKRSV
WVTRRQMWQDLCRAGVPRENIDRKPNSVLXSLWKALKPEXQFTEDXNDKTXQVKKIKPVPGVGNYPSRLSGTFPSCRKVC
>GGERVL18_gag#LTR/ERVL 39-1616 [Gallus]
MXVSFLWNXYKWVRGENITPLDKMIPGQIPGFLGSPYYELATXIEKWGPLRVMGNISPFRMADYFXGLSKDILITKERQL
AASTVAWPLLNALNQAEMRANTLENENQLLXDRTEKLEQELSILTGKKTTLHFPIGQVRNISIDNDQIPESTDLVDQENK
NSKSDLXAPLATDPLEIRPIITQKTKKIQDRPAGVPPDQWPPAQTHLHVTARPYTATELMDLVQRFRQKPRESVPTWLLR
LWDSGAESVVVNGPEISKLATMTVHPALRQRLYAGVQYTNENHSIIDWLMAACRMVWPNKSDIPLHTGLWSSMEDLQNYI
RELGIREAIYEDXFXSPDMVRFSAGMRDLILQQAPSHLYGTLVSILNPLVASESVVQQAAQLVADLGETERLRTRRNIRT
XEEAEVLPVTKTRRPAVRTPQSGPIRVSRKQMFNDLIRAGVQFAKIDRQPNHVLLQLWKQLKDNQKFQNYPKKPRVRIXD
RXPTTTWNLEDFIVPSRKKKPPQVSRATMPEPPEAKDLAIAQFMA
>ERV3-2_Crp-I_1p#LTR/ERVL 27..1562[Crocodylidae]
MESLEGKNGVEGSEGWAPLITLIEEVTGIKNPGWDKERLKPAWSDPATVPCQWAAFTAVQKGKPRKGCLSWLLATCLRLG
AEEATQLHQMIQSLESRVTQLESELREEKDSSSVACAAARTAQDRLEILERREGKILVTQAIASLEQKVQVARSVEPSLE
KVRQCLYNGIPKTELWDDPESESLYGEIAETKPGNDEYVRLAAEAREIPPPYAPAVQENLGGGLTQTFPVVMTHAGPQGG
NPQMETRSFTHTEIKELQEQHKAKPGEPIIDWLVRMYSEGASAVSVSRTEAAQLVLRPEIQLGQWVGQDQNITLFSAAMQ
AAAAGYGNMEEEFNPPPRAWLNLEEAIRCLYRLSLTEIVQAGNWRHTLDEELITEAMWRKFCRRSPTECTSALLALQQEL
VTHLVRDAIRRLVQLLPILQKPGLPKPIKTAKAMAVAPEKDDPAGPPKSGKVGNEKPKAPRAQMWRELLAAGFSKEQIDR
LPTIVLQGLWIKHCEGEKGKKTEPSAPPDPPQ
>GGERVL-B_gag#LTR/ERVL 533-2110 [Gallus]
MLSISLNVFLSIRAXWKKSPPKPENADWQGIWRGLGKILEAWGPAMSWDFTLEHLWDPEKLSQHLSQGWCGLDRSKEVRL
IWGLACAYRALYNTILERESFRAEVQAKGGNLQVKSDQSQETPVTVSVAPVEGKKWKRVSSRLERKKEEEEAEEEVEEDP
GEGXSSEPRKAKAKTKRHGEESDEEEVSITVRRPLKMTEIQGSRKEFTRRPNETLVTWLLRCWDGGASSLSLDGNEARQL
GGIARDXSIDRGISRCLDGAATLWERMLVAVRERYPXKDSLKPAMKKWDTIEKGIQYLREIAVVEMLYDPNFVPNDPRQD
HDPERVRTTPDIWQKLTRAAPXRYAPTLAATFDRYEDQQRRPLVFELILTLQNYEQHLPPTHASISAVSEXANRLDEVQE
QVSLLINRDEPVVVSETFDEDQDKQRGLMKELIKLMKIQLIKGDGPPSSPVSSKISAIEGKRFPAQAXNNSKTTSRIALW
RYLRDHGEDMRKWHDQATPVLRARVRELQNRSTTSVVAPVTTGNE
>HERVL66_pol#LTR/ERVL 435-3077 [Primates]
KKQLSEWPGQGKTEELVSRGLEQVKTQLLSQGWEINLSKIQGPAQTVKFLGILWNAGKQSILPKAKAKILEFATPTTKKE
AQKCIGLFGFWRHHIPHLGNILQPLHAVTRKRYDFHWGEKESMAFEQAKQAVQLALDLWPLRDGPVELQVTVLDQHANWS
LRQKQDGKRVPLGFWTQKLPEAGKAYTPFEKQLLACYWALLETEHLCFNHDVFMRPEIPIMTWVMSSPKTHRIGHAQESS
IIKWKWYIQDQAKPKPKGVSFLHEDVQNLPAQETTEQVLQIGKETSPAQWGKSFKELSPEDQKHAWFTDGSTKYIGGTRC
WKAVAYNPVKNISISDEGRGGSSQLAELVAILRAIQEEARGICHLYTNSWSVANGLTTWMPQWQRNKWLIGNKEVWGKQY
WEDISILAHTTIITVFHVDAHASLLSLDRLFNQQADQQAKISTITANSDPEEADWAAITQWVHHQCGHLGVQGTMAWGVQ
RRISLPQDAVQTILSQCTTCQQLKTKPIPQRAMGHIHRGKMPGQICQMDYICPLPLSKGCQYICTAVDTYSGLLVACAYA
NANQINTIKTLNILILYYGVPIQIQTDNGSHFKGEAVQTFAAQDGIEWIFHIPYHLQAAGLTERMNELLNKQLKVLGQGK
LEKWKDHLFDTLQNLNNWRLTTSETPVSQMLTPHLQIAKCASVVQPLSLKFWKIHPEAILPWKSTREATGLDLHSFKSGI
IPAQSTYMVASGLGVIIPRNECGWITTRSSLAMRGIIMYGGIIDSDYRGELKVILYNTTPDSFAIKPQMRVAQLLVVPCQ
QLTPEEISAPTEATYRTGGFRSTGTGSLNPGAKIWVQRPSDPAPKAGDLVAMGAENEGIVQFPKDEKQYHVPLRFCYYRE
>HERVL18_env#LTR/ERVL 4896-6036 via tfasty with PRIMA41_env, 1 frameshift and 1 stopcodon.  [Primates]
SNSIVDWAHTYAEVTNVSNCWICTALPAAAADGLPWHIHSASAENWTWLETWGPRPTXGMQRGKLWIGGAAKPIAMPAPW
LTHSVYDGWGWLVGEHVVPPXQAPxCIEQHWGNVTVGWLPAAACANITHVTTPKVWWNKRPHQGWAPMDFVPPGSLWVCG
DTGWPYLPANWTGCCTWGWPYVPATVLPTLPRRPHNWEALRSRFLRVRRAPWWLYPLAVTITGAGVITVETQVXALAEHT
AQALNYTRVALLLLXDEVDQIRKVVLQNRMVLDIVTAAQGGTCALLGTQCCTFIPDNXQNITAALQGVSREIKAVESLTD
DPLQRWWASLGSGLRWALIIIGSIAGILVVSCCSLYCCCGLWVQGSTLWARVPTKRTPSA
>HERVK11_pro#LTR/ERVK 2075-3082 [Primates]
GKREAGPVPGPNIKWDTSDSDQRCVSASSGPNAAPSTNKFTYSQPRWVPASSSVSVQCLSTSTVGGRAVNLCSTIPLNLL
PNSLPLIVPTGATGPLPQGSVGLVLGRASTSAKGIIVHTGLINSDSSDEIKIIVSAKVPVSIPAGESIAQLLLLPNIVLN
KGDKTRGPGMGSGGEKAAYWINVISKQRPTCTIHIQGKKFEGLVDTGADVSIISSTLRPSSWLKHPANMGLVGVGKAEEV
HQSTFILACTGPDGQKGTIQPYIMPIPINLRGRYLLEQWGAEINIPHNSYSAPSQHMMENMGFVPGLGLGPKHEGITKPL
PITIKEDRAGLGYPF
>HERVK9_pro#LTR/ERVK 1511-2362  [Catarrhini]
TPVQCLSPATAGSAAVDLCCTKAVSLLPGEPPQKVPTGVCGPLPAGTIGLLLGRSSLNLKGVQIHTGVIDSDYNGEIQIV
ISTSVPWKAEPGERIAQLLIVPYVEMGKSEIKRTGGFGSTNKQGKAAYWVNQITDKRPTCEITIQGKKFKGLVDTGADIS
IISLQHWPSTWPIQPAQFNIVGVGKAPEVYQSSYILHCEGPDGQPGTIQPIITSVPINLWGRDLLQQWGAQVLIPEQLYS
PQSQHMMHEMGYVPGMGLEKNLQGLKEPLQVERQSSRQRLGYHF
>HERVK11D_pol#LTR/ERVK 3025-5756 via tfasty with HERVK_pol, 1 frameshift and 1 stopcodon.  [Primates]
TLLGAVTAEPPPPIPLTWMCESPVWVEQWPLSKHKLEALIEIVNDLLQANTIEPSLSPWNSPVFVVQKKSGKWRMVTDLR
AVNAVIKPMGALQPGMPSPSMIPKEWPLIIIDLKDCFFHIPLDKSDCEKFAFTIPSINNSAPAARYQWKVLPQGMINSPT
ICQLFVGTVLQPIRQTFKNNYILHYMDDILIAAPTKDELIQCFTSLKLAVANAGLHIAPDKIQQATPFLYLGMQLEAHSI
KPQKVQLHTDNLNTLNDFQKLLGDINYLRPTLGIPTYALSHLFATLSGDTDLNSPRSLSEPAKQELSFVEQRVREAQVSR
IDPNLPLQFLVFPSIHSPTGLIVQNDSLVEWVFLPNSASKTLSIYLDQMATLIGLGRQHITKISGFDPNIIVVPLSKNEV
KNAFSTSLCWQTNLADFIGTIDNHLPKSKFFQFLxNTSWILPKLTRSSPLEAAITIFTDGSSNGKAGYVGPKDKVISTPY
TSAQKAELFAVISALQDFDQPLNIVSDSAYVVHATKAIETATIKNIADTNLFSLFSLLQKTVRNRNHPFFITHIRSHTNL
PGPLSSGNHKVDTLVSLAITDAEQFHQLTHTNASGLKHKYSLSWKQAKQIVQHCSQCQVLVLPTQSPGVNPRGLSPNAIW
QMDVTHVPSFGKLAYVHVTVDTFSNFIWATCQTGEATSHVKKHMFSCFAVMGIPSELKTDNGPAYCSKAFKNFLDQWHIK
HITGIPYNPQGQAIVERSNRTLKLQLLKQKEGDKELSTPHIQLNLALLTLNFLNIPKSSSVTAAEKHFSGNRPTVNQGRE
VWWKDVQSNIWSKVSILTWGRGYACVSPGEHQSPVWIPARHLKLCPEDACNNETEKFAEKTPQQETTNTSNHQKKRKKIT
TLTPLQQTIQSAILNNLSPAIQVRLNLCLLL
>HERVK14C_gag#LTR/ERVK 171-1961 [Primates]
MGQAESKFANYLSLVQQLLCHRGVIVSTQNLTSLFHLIEKYSPWFPEYGTMNVKDWDKVGSDLKRAQQEGHDIPFSTWSV
WSAIKTALEPFHTEEEEEKFQDDIEKFNNQESDDQQSEPSQSSFKKGEKWEAIYANLQKLMKETVPPTAETVPPTAPLGE
GPEWPPPPQPYEFLEREPETRLATPIVARPTINYGKGKLQACPTANYSEGMIQACPPVNYGRGMLQASPNTNYGAGTIQA
SICQAREMGDLDAWQFLVIISPAEEPREHAQACWEPFPFKILKDLKQAIGQYGPNSPYVHSLLQSVAYNRHLIPMDWESL
ARSTLSPSQFLQFKTWWTDEATNQACRNAQAQPPINITSDQLLGIGQAWGTVNQQMVMGDEAVDQLRTICLRAWEKIHDP
GTTYPSFNSVRQGPREPYPDFIAHLQDAAQKAILDSHARKVIIQLLAYENANTECQAAIRPIKGKADLNEEKTLSEYIKA
CDGIGGHLYKASLLAQAMAGLRVTKNTRVFPGSCYNCGQIGHTKRECTKSQKRQNSGGKSREPGTFPRCKKGKHWANQCH
SKFDNSGQPLPGNGQRGQPQALIQNGAFPIQDGTSLT
>HERVK14C_env#LTR/ERVK 5388-7433 [Primates]
MSQNPRKRKRPRNVPAPPVHQMAQMNISVEQMETSKTHQATPPTWGQMKRLAHIAEENLRSQNKLLTTSNLMVAMMVVIS
LVVSLPVAEADQNYTYWAYIPFPPLIRPVTWLDPPVEVYVNDSVWMPGPTDNRGPTHPEEEGMLMNVSIGYRFPPICLGP
AAGCLNYDKQSWMVYVPAHNGSKASIHAISGRTFQSLDTIKYLEHGYVMTHRQINKFKPNKKPCPRQATKWSEKLEVLTW
EDCIANSAAVLQNNSYGIIIDWAPRGHFAVNCTGQSKDCRETPFANDYPDNAPKLYRRIETNYPIKWEENGMAPPSPKMI
DPIISPEHPELWKLMMAQTPIRIWKGEYKTETHSKKLRFVVAMTSNQTVPLQSCVKPPFMLAVGKINILPDSQTISCLNC
HLFTCINSTFNKDNSILLVRAREGVWIPVSLNRPWEASPSIHIITEVLKGILNRSKRFIFTLIAVIMGLIAVTATAAAAG
VALHSSIQTAGFVDSWQKNSSKLWNSQSQIDQKLANQINDLRQTVIWMGDRIMSLEHRIQMQCDWNTSDFCITPSSYNAT
EHHWEMIRHHLQGKEDNLTLDIAKLKKQLFEASQAHLTLLPGADILAGATDGLSNTNPLKWIKTIGGSTIANFILVCVCL
CCLFLVYRCRRHLGREARHRERAMIAMAVINKKKLIETKKGD
>GGERV28_gag#LTR/ERVK 241-2082 [Gallus gallus]
MEREVALNLLQRFLEKRGVESGIVKQVPGLIAYGKADGMFVHSEEFFEEEAWRKFGDTLWHKVIDEDKGAKKLMKAWREV
INCIKKHKVEKQVAATASRHLAGLPEDAGRIKPGCDYVPIPPSGASVPVRTSGLQEVGESANPSAPPLGSLGDESGDEAP
DLYPPNPAGGDGNGSEDSRQAKGSCLTKRSEDPSLNRQAAAKVTTPRPVPSQPRPSRLDWAAVAREAMGEGDMAMVEAVM
QAFPVRYEQEGEGGLRGGHLPLGWKLLSQLRATVNDSGLHGEPTKQMLNYIRGSSVLVPEDIKVIARMIMSQSEQLLWQA
HWQRLCEISSNTPRAAEDPLFGVTVQQLMGLGPFATPDMQVHLGPDVCLEGMRTARQALEMVKTSAPTPSYMSIKQGREE
TFASFIDKVTEAINRACVPDWMKAALLRQCAMENCNSSTRSILITLPIDATIEMMLERMSRVPAGPQALLVEAVRELGSK
LAEAQTQAFAALAPLVGGGVPKGARPRRSQGLSCXRCGKEGHWRRDCRAKVWCENCNSANHSTLACRASGNSGTSAKSRR
AQTTMAAPVVSPPNGTPSNHSPPAAVSHEPPPESPNYGPPQGGASAWTWQPQQM
>ERV45_MD_env#LTR/ERVK 5073-7246 [Didelphinae]
TPRKMERRVIRRLERSRPTTNIRTRFCLYFPTGFGLTHLDPRLPHPSIRPGTSRGNCAPALAPLPSSASSSSTTPPPPPD
PVHNLVEPVRRLSLRHPSASPLRRRRLSTPTHLTVSTLKALSQQACDIVRRQGKEITPDLLFVAMLAVLACQVTSISATA
HWADFPEPPVLHPATWVNDFQVYTNDSDFLGGPTNAYILHKSVPNFTYFGLSNLPPLCFTVGPNPSPGCLLTDIRSYLTD
SPGKGNIRNVWLLQMMSPAFSLNKFSVQTTPILPPKEIPECKYLSGKLWNQIDEAHGFPPWRDCGFPRRGVRYPIINGSS
FVFDWSLYSPGYDFRGLQEFSMXLPDLNWTYINKIFPTDEPIYRWFNPGWPSPPLLVFFENPSAPTIHFSLWRLIASLRT
AMLLRPNGKKEFRPIQACVRAPFALIIQPRKGFSSIQHVSPTTYKITCSGCILTNCLNPAIPASSVYIVKQPPFIMIPVN
MTTDWYEDPGIYALQLISNHLTRPKRFVASLILGITALISIIASLTASTTALIQTVHTAQHVDNLSKNVSLALLTQEHID
KGLEARINVLEEAILYIGNQLQNIKVRFKSKCHAEFKWICVSPLPYNQSDVPRQNIKQHIFGIWNHSEFSVDLKTLRRQI
MDISHSGTSLYSASSIANSFYDSISSLISNSDLTHTFIACGFALVLFFLILLCFPVLIRYLGSTIRQVQIELKSLQLKNK
KKGG
>ERV41_MD_pol#LTR/ERVK 2712-5369 [Didelphinae]
IVSNNSFSPLLGPLIAASPSRTAEKIIWKTTTPVWVDQWPLTGEKLTVVERLVKEQLEAGHIEHSTSPWNTPIFTIKKKS
GKWRLLQDLREVNKCMIIMGSPQPGIPTPTAIPKNYHLIIIDLKDCFFTIPLHPDDRPYFAFSVPSVNFKEPMKRYQWKI
LPQGMANSATLCXNFVAQTLAPLHNKYPEAYIIHYVDDILISHPSHDTLQNLFXDLHFALLQDRLIVAPEKIQRTEPYTY
LGHLIEGACVRPQKLTIRLDHLKTLNDYQKLLGDINWIRPSLKLSTSDLSPLFSLLAGDPNPNSSRILTPEARICLQKVQ
EALSNSQLSRVGPSQPFSLLIFATPHSPTGLLYQDGPLEWIYLARTPSKSLSIFIDMVSSLITKGRRRALQLFAREPTNI
ILPFSKGHITSLYQFSIPWQIALAGFPGQIGHNFPSNPLIQFASQHAICFPKNVLSSPIPQATTVFIDGSSTGKSGIHVP
TQNICLTIPTSFSSPQKVELYSLIHVLTLYPFTSLNIFTDSRYTYHTALHIETALIKSTLPPDLYQLFSTLQSLSINRQT
PFAITHIRSHSNLPGPLTEGNSIADLLTAATLSPFQQAQESHKLFHQNSQSLRLQFKLTKEQARSIVKSCPSCLPTLPSP
SSIAINPKGLLPNHLWQMDVTHYPPFGRSSFIHVSVDTFSNLIFASIHTGEAVKHVISHLLSAFQFMGIPQTLKTDNGPA
YTSKALANFTSQFKIIQKTGIPYNPQGQAIIERAHLTLKNQLKRLKNLPYQFTPGRALAHALFVINFLNLDQQGQSRIDK
HRSTQIPRQKVIWKDIVTNRWQPPAPVLFWGRGSVCVFPPGTPAPIWIPERLTRPCHDSQPNNKPRDASEQEGEKEGDEE
TDLQA
>ERV147_MD_pol#LTR/ERVK 2673-5282 [Didelphidae]
RTFXFFIGATVGITADPIIWKXDEPVWIXQWPLPKEKLQALEELVQTQLKLGHXEPSNSPWNTPVFVIKKKSGKWRLLQD
LRAVNNTMETMGSLQPGLPSPVAIPKGYEIIAIDLQDCFSTIPLXPQDRVRFAFSVPSLNLKRPYQRFHWLALPQGXKNS
PTLCQKFVDLALNPIRMQFPDAYIXHYMDDILLAHPDRAKLHEIMASTVKALSKYGLKIAPDKIQTELPIRYLGRTIEKA
NXISHHNLQLRTDHLKTLNDFQKLLGDINWIRPFLKVTTADLKPLFEILKGNPSPTSPRALTEEGKKALALVNQAINNQQ
LSRLDYNQPWXLIILPTIYTPTGCLWQNAPLEWLHLPNSTRKVISSYVMLIAXLILKGRRRSRELFGADPSSIITPLNAA
QXNDLYCYSTDWQVSVAGYSGDIGYHIPSNPLLQFLKRQAIXFPSRSSPSPLPSPPAAIVFTDGSSNGKAVTVXNNQPFV
QQTKEASAQRTEIAAVTFAFQKLANVPFNLYSDSQYVVKLFPHIETANLPSSKSSIFPLLSELQKLIQARDTPFHIGYVR
AHSSLPGPIHEGNXLADSLTRAVFTAIEDAEASHKIHHRNASSLRHQFRITREAARTIVRNCPHCPLHLHSPSYGVNPGG
LRPNHLWQMDVTHVPSFGRLSYVHVSIDTFSHVIIATAHTGEAYKDVSQHLFTCFSYLGMPKAIKTDNGPAYTSKAFAKL
CATFRISHSTGIPYNPQGQAIIERAHQTLKAQIAKLQDGDFSHFSPHHILTHAMFVINHLNLNSDELSPMDRRWNSDKAS
PKPLVKWKDVLSGVWKGPDPLLTSGRGFACVFPQDSDSPIWIPDRLIRPYVQPAAKASQPASPPTPTTS
>ETnERV_gag#LTR/ERVK gi|38093473|tpg|DAA01916.1| TPA_exp: gag protein [Mus musculus]
MDQAVANSFQELFQARGVRLEVQLVKNFLGKIDSCCPWFKEEETLDCGTWEKVGEALKITQADNFTLGLWALVNDAIKDA
TSPGLSCPQAELVVSQEECLSERASSEKDLLNSKIDKCGNSDEKLIFNKNHSDRGAAHYLNENWSSCESPAPPVVPTSGG
ATHRDTRLSELEFEIKLQRLTNELRELKKMSEAEKSNSSVVHQVPLEKVVSQARGKGQNMSNTLAFPVVEVVDQQDTRGR
HYQTLDFKLIKELKAAVVQYGPSAPFTQALLDTVVESHLTPLDWKTLSKATLSGGDFLLWDSEWRDASKKTAASNAQAGN
SDWDSNMLLGEGPYEGQTNQIDFPVAVYAQIATAARRAWGRLPVKGEIGGSLASIRQSSDEPYQDFVDRLLISASRILGS
PDTGSPFVMQLAYENANAICRAAIQPHKGTTDLAGYVRLCADIGPSCETLQGTHAQAMFSRKRGKNVCFKCGGLDHFRID
CPQNKGAEVRQTGRGPGICPRCGKGRHWAKDCKHKTRVLSRPVPGNEERGQPQAPSYSKKTAYGAINLLPSQQDQFLSLS
GQTQEMQDWTSVPLSM
>ERVH_OC_gag#LTR/ERVK 239-2104  [Oryctolagus cuniculus]
MSQTVQTMEFFGYSLPTGYLFLLLGTILYFSLKIIHCGLSVVSLSSYSPPPRSFSSKRGKRGGRKIHAFVRAVVEMSPWF
LQQWRQVGWKLREAGESIEVLKLWQLVDQVLQDPMEGIELLLNEGSELQEELWQGSQESSYCNEQVRRKSKKDLESQEAY
VGEKEAEEGTSPPREMPRIYPGPTRLANSTIKDESPPRYRPLVLPKFPPVKKSPFFPHEIEEEWEEEKGVMEGVGMQEEI
ERPRTESKQRGAVYRKPAWEQYQEPGQVFPVIQDQQENRGWTPLDHKLLKELQQSVQLYGPHASYTQAILDNIGQQGLIP
EDWRNLVKAVLGGGDFLLWLAAYKEFAREYSKQNYQAGNQAWDEEMLIGEGRFANPDEQARLPTAVLLQVREIARRAWKV
IPRKGEIRHSLTKIVQGPTEPYADFVNRLMEAAGNIFETVEEAMPLVRRLAYEQANKTCREALRPWQHKDIPTFLKICRD
VMDDVASGSHAAVAVTRQFRQNMRGRICFRCGREGHLMRECRAKFPARDRQGIENSRRPGLCPRCRRGNHWVSECYFKIN
SAGNPQRMPNEPGPIRRSGVYGQQQKNGMWAPAPRGQNNRWVPRSQNQIFTAQSYEPPNIRY
>HERVK14C_pol#LTR/ERVK 2824-5470 via tfasty with HERVK_pol, 1 frameshift.  [Primates]
PKRIRLPFLGVVTVEPPSPIPLKWKTQNPVWVKQWPLSQEKLGALQELVKEQLNKGNIEPTFSPWNSPVFVIKKKSGRWR
MLTDLRAVNAVIQPMGALQPGLPSPTMIPRDWPLIIIDLKDCFFNIPLAESDFEKFAFTIPAMNNKEPAARYHWKVLPQG
MLNSPTICQTFVGKAIQPVRDQFPDSYIIHYMDDILCAAENRDQLIQCYSYLQEVVANAGLLIAPDKIQTATPFQYLGMQ
VQERAIKPQKVQIRKDSLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDPALNSKRELTPEADKELQMIEEKIQ
QAQVNRIDSSLPLQFIVFPTLHSPTGVIVQSEDLVEWSFLPHNTVRTLTVYLDQMAILIGQAHLRVVKLCGSDPDKIIVP
MNKNQIRQAFVNLVNWQINLAGFIGVLDNHYPKNNFFQFLKLTTWVLPKITHCAPLEGAVTVFTDGSSHGKAAYVGPKNR
IIQTDFQSAQRAELQAVIAVLEDFKQPVNIVSDSAYVVQATQYIETALIKYLVDEQLYQLFSSLQKAVRDHYFPFYIMHI
RAYTNLPGTVVRANDQADLLVSTVLTNAQDFHSLTHVNAAGLKQKYQITWRQAKDIVQHCPQCQVLQLPHEGTGVNPWGL
TPNMLWQMDVTHVPSFGKLSYVHVTIDTFSHFVWATCQTGEAAAHIKRHLLSCFAAMGIPQKIKTDNGPGYCSKSLQAFL
QQWHIEHSTGIPYNSQGQAIVEQANRTLKSQLQKQKQKGGTREYSTPHMQLQLALIITLNFLNLSRDQVTTAAEQHLTGQ
KINPHEGKHVWWKDVRTKTWEKGKIITWGRGFACISPGENQLPVWVPTRHLKLCHEPESKEEEKTSERPCTPSSSDGSDE
HLC
>MMERVK10D3_pol#LTR/ERVK 2541-5136 via tfasty with IAP-d, 2 frameshifts. [Mus musculus]
FFLGATEGALPITWKTEEPVWVPQWPLPSEKLTAAQELVREQLNLGHIRPSTSPWNTPIFIIKKKSGKWRLLHDLREINK
QMVIMGPVQRGLPLPSALPRNWPLIILDIKDCFFSSIPLHPQDAVRFAFTVPSINHVEPDERFEWVVLPQGMANSPTMCQ
LYVDSALKGVRDQFPRLKCYHYMDDILLAAPTEEMLEHAYSVVIQKLKEKQLVVAPEKVQKGKVVNYLGTKIFDSRVSPQ
KIQFRTDNLRTLNDFQKLLGDIQWVRPYLGLTNKQLQPLYDILPGDIELNSPRQLTDSARVALSLVEKGIQTAALKRRDL
FSPIILCILPSETQPTGVLWQGAPLLWIHPKISPAKILSYYPASVAQLALIGLQQCIQYFGNPPQELIVPYNMKQIEVLS
ATVDDWAILRCSFMGKMDNHFPKDPILQLIKAHPVVFPRITSRVPLPDAPLIFTDGSKTGCGAYLVHGSTPVTLQFPPAS
PQVIELHIVIKVFELYSESFNLISDSQYVVNSLAVLEVVGKVNFRSTIGDLLNKLQSLILNRSSPFFVQHIRAHTGLPGP
LAEGNDLVDKAARAASAFLIQTPVELAREFHSQFHVNSKTLSSRFHITRAEARDIVTACKACAPLLPQASVGVNPRGLLP
LHIWQMDVTHFSEFGKLQFVHVSVDTASGVLFASLHTGEKARHVIAHCFEAWGAWGQPRELKTDNGPAYTSASFVSFCKM
MGVRLVHGIPYNPQGQGIIERAHRTLKECLIKQKGGVASGATPRERLAIALFTLNFLNKDKNDLTAAERFANPEASYKGT
VMWKDVLSGRWHGPDPVLVWARGSVCVFPQDHRQPLWVPERLTRVVQDGRRCPDEAAPGGDDAARSDD
>MMERVK10C_pro#LTR/ERVK 2135-2968 [Mus mouse genus]
RQRPRRATPGSAGLDICATSRVILTPQMGCQPISSDFRGPLPKDTVGLLLGRSSSALKGLVIHPGVIDSDYEGQVRIMCS
APRGIVAISPGDRIAQLLILPSLHNMFPSGRDSRGDKGLGSTGNNVAYISLDLDNRPTLQLQIEGKTFQGIMDTGADKSI
ISSKWWPASWPVNQSSHSLQGLGYEATPTISAKSLQWKDKEGRTGLFQPYVLPLPVNLWGRDVLSAMNFILTNDYSQKSK
EMMKGMGYIPGLGLGKNLQGRISPVKATVKADKKGLGFF
>MMTV_sag#LTR/ERVK gi|9626970|ref|NP_056884.1| Pr48 sag [Mouse mammary tumor virus]
MPRLQQKWLNSRECPTLRGEAAKGLFPTKDDPSAHKRMSPSDKDILILCCKLGIALLCLGLLGEVAVRARRALTLDSFNS
SSVQDYNLNDSENSTFLLRQGPQPTSSYKPHQPCPSEIEIRMLAKNYIFTNKTNPIGRLLVTMLRNESLPFSTIFTQIQR
LEMGIENRKRHSTSVEEQVQGLRASGLEVKRGKRSALVKIGDRWWQPGTYRGPYIYRPTDAPLPYTGRYDLNFDRWVTVN
GYKVLYRSLSFRERLARARPPWCMLTQEEKNDMKQQVHDYIYLGTGMSSIWGKIFHTKERTVAALIEHYSAKTYGMSYYD
>PlatERVK1_pro#LTR/ERVK 1535-2407 [Ornithorhynchus]
VSLKFYQRKNPDIGKRKKGPAPAPTNNRGSPNIQSGSLSSQGEYPVSPAYRHLSYADLTRATPGSAGLDLPSAVQVVLTP
EMGVQKIPTGIYGPLPIGFVGLVVGRSGMTLKGLNVIPGVIDSDYIGEISVLAYAHKVVQFPERTRIAQLLILPYKQVGK
TCQNVRKAQGFGSSGDQAFWAQTITLERPQLTILIEGKTFRGLIDTGADKSIIAKRHWPLSWPLQQGSAPLAGIGTVETP
AQSSKLLKWESKGQQGYFQPYIVDGLPINLWGRDILQQMKVMLTTETPLS
>MYSERV_Rn_propol#LTR/ERVK 2353-5577 [Rattus]
MGPHPAKKLPGGPLAGPNARQGEFSSSEQLNGTTSKIDVLGPEEAEGSPMDNSKSLKGSEKRIFWQTSIEDQRPKLKILV
NNIEIEGMVDTGADVTIISPKSWPTSWPLQGVDMQFQGVGTLSQIKQSTRWLKCIGPEGQVGKLRPYVADIAINLWGRDL
LQQWKTQINIPSVSGSGPEIHQAPNKNFKSVRECYQGQLETVQAVHKQDTAEADNLVLPQGATAVKTTTALPLRWLTDQP
IWIDQWSMTKEKLQALEQLVQEQLEAQHIEESTSPWNSPVFVIKKRSGKWRVLTDLRAINKIIQPMGSLQPGIPLPSLLP
KEWPIIVIDLKDCFFTIPLHEGDKERFAFSVPTLNRGRPIKRYQWKVLPQGMLNSPTLCQYFVQQPLEMIRKQFPQSIIY
HYMDDILLSDSDINILERMFDEVKKTLPCWGLRIAPEKIQRGDSINYLGYKISLQRIRPQKVQIKRNQLRTLNDFQKLLG
DINWLRPVIGLTTQELSNLFQTLQGDKDLNSPRKLSAEAEKELALVERKLQDTHLDRIDPKMACILVILPSTHSPTGILM
QREDYILEWIFLAHKQSKKLKTYIEKVSELILKGKLRLRQLVGMDPAEIVVPFTNAEIASLWVQNEHWQRACSNFLGEIN
NRYPKSKRLQFIKRTNWILPRIIKGTPISGAPTFYTDASKSGKAGYKSENVSKVTESPYKSVQKSELYAILMVLSDFQEP
LNIVTDSQYAERVVLHIETAELIQDYSELTSLFIQLQQKIRNRSYPLYITHIRSHTGLPGPLAQGNNEIDQLLIGSVLEA
SEFHKKHHVNSKGLKKEFSITWQQAKEIVRQCPTCSLYNQTPLPTGTNPKGTQRNEIWQMDVLHFTEFGKLKYIHHTIDT
YSGFQWATALASEKADSVITHLLEVMAIMGIPIQIKTDNGPAYISNKIKRFFEYYNIKHVTGIPHNPTGQAIVERSNRSL
KEMLNRQKGATKTPRDRLHSALLTLNFLNADEQNSTAAERHWIVEKTTELNQPAYIKDILTSEWKMGNVLRWGRGYAYVS
TGEEKLWVPSKLIKIRHDKGRPPEVLGNTEEKGD
>MacERVK1_env#LTR/ERVK 5275-7068 [Cercopithecidae]
EAEGVVQQAGQPKTPLTLFLAMLAVVNCQVTAGEFTYWAYIPFPPLYQGVAWGDREVPVFTNDTAWMPSPFLNQDPELDT
GTVNSSYQFGVEGLPICLGGSPHCLHLSHEAWAVRYNHSHISAFTMIIVAQSFKYNHTAVLNETLPSTLSLCPIPDVSGG
VSQLEWTRCRSSGPRLLLEVKGKSRKYLVTDWSVHGDFQTKFSHVNLRWHKGNHSISADGNETIIWHDGGLSPPMPHLAN
TSQIQGHIWKLLAAGKPMFTFTGNMSLNLTNIANPFHISLHRNSSRYVIACVRKPYLLLTGIFKWDNNTGVVNCTNNCTF
LSCINTTWWNNNWNESHSDLYILRARKETWLPVNLTRTWSESAGVTQIYKVMQDLVHRSRRMVGIVVTAVIGLVAIASTA
AVAGLALHQSIQNAEFVQQWHEQSHLLWQQQRDIDAHLTERVDNLEQVVSWLGDQLTVLNTRALLKCDWNTTQFCITPVP
FNSTVHNWTEIKRLLIGHNNLSLEIQELTQNISETFRNQLPLLTGADLMTGIAQSLTSLNPMSPVKTLLTSVSSNVLIVV
LAFVIFTVCWRRCQRANTESQRAQHVMMVLKEIQTCK
>HERVK22_env#LTR/ERVK 4904-6835 [Primates]
MKKMTLQDPQPRTMQLPRMTQAPDITWGMLKKTTQEAERILLQTQTPFTPDNLFLAMLSVVHCNSCRALILFMLSLCLQP
VPATLYWAHLLDPPFFRPVTWADTPFPASNNVTAWLGGIDLPPVGSLSNGTHWTKVPGNTTYHSTILPLCVSYKGSNPYC
VPAQTQLWLHHGKGNAFTVLAAGSLKPGNAINATFPNIPSCAKEQSWESNGFHFSWEVCHGGQARSLQLGNYNILDWSPH
GHLQGNLTDVLIYHGINHSFVATSRSPIIWADGGMGYPRPQVKSMPPQDTLWCLGHLSTSLNTWHGTYHNSSHNYTMTFI
HNHTDQCLICTTHPYVFLMGTDISVTPQNSTFVTRVQGQAWFASCITNYNISNLNITSVMVLRRQSEAFLPVNLTCDWQG
SSALATLECALSQVRRKRFIVTLTAFIVSAIVILATASVAVASITESVQTATFVDNLARNVSNELLLQQGTDQKILARLQ
ALEAALEYVGERQDALAFQQQLNCDWEHKHICVTSLPWNQSIHSWDEVKQHLWGTFHDNLTADVKQLKTKILESLNAIDL
HAQQTAIWKGVRDHLSWIDPRSWGSLLDWKRMLLIILMFVLCYLLILGCKAGIRAITAAPDRPVAAHICTLQSTKPDAKN
RKGG
>HERVK14C_pro#LTR/ERVK 1961-2848 [Primates]
SKRSVPSPVYPCTNVQQLSPSTAKSGAVDLCCTKAVSLLPGEPPRKVPMGVYGPLPNGTVGLILGRSSLNLKGIQVHTGV
VDSDCQGEIQIVISSTVPWSANPGDRIAQLLLLPYVKLGESSEKRTGGFGSTNSAGKAAYWVNQVSDNRPICMVTIQGKQ
FEGLVDTGADVSIIALYQWPKNWPKQKAPVGLVGVRTASEVFQSTFILPCLGPEEQEGTIKPVIIPIPVNLWGRDLLQQW
GTEISIPSPRYGQASQKIMSNMGYVPRKGLGKQETGIIEPIQVTVKNDRKGLGYHF
>IAPEY3_gag#LTR/ERVK 262-2124 via tfasty with IAPLTR3_gagpro, 6 frameshifts and 1 stopcodon. [Mus mouse genus]
MGTSHSVVTALQRSVLKQRGLKVATKTLEGFVKEIDRIAPWYACSGSLTIPSWEKLKGDLVREQQNGKLKAGTMPLWKLI
RSCLKDEECQQVVKAGQRILEEIQDSLSETERGERLGAQKKKRCTKxENRPFHGPxARGKENLGKETLGEFRKKDEKEEK
KKDQSGEVPRRRSLYPPLDEFKALALSSSESDEELSPSEETDLEEEAARYEEERYHPDERRANQSQKKPKAAGDKSQLKP
ACCSASGPSASGPSAPPPYVQRYHSDSFIPKEEQRKMQQAFPVFEGADGGRVHAPVEYIQIKELAESVRNYGVSANFTIA
QVERLATLAMTPGDWMTVVKAAVPNMGMYLEWKALWQDSCQTQARANATVEGDQRTWTFELLTGQGQHAANQTNYHWGAY
AQISAAAVKAWKALSRKGEASGHLTKIIQGAQESFSDFVARMTEAAGRIFGDPEAAMPLIEQLVYEQATQECRAAITPRK
SKGLQDWLKVCRELGGPLTNAGLAAAILQGQRRSDTAELKLCYNCGKPGHLLKKDCRALVKRTAPGLCTKCGKGYHWAKD
CRSIKDIRGRLLQPGPPQAVENENEGISKNEFRAPRSQGPKTYGTPTGNRWTPQSAGQQKA
>MacERV3_pro#LTR/ERVK 1944-2891 [Cercopithecidae]
QSRKSFTPQAGKRDEGPASGPETSIWGSQLCSSQQQQSISKLSRATPGSAGLDLSSTSHTILTPEMGPQTLNTGIYGPLP
PNTFGLLLGRSSVTMRGLQVLPGVIDNDYEGEIKIMARAIDSIITVPQGVRIAQLLLLPLVKTDNNIQYSNRNIKGFGSS
DIYWVQPITNQKPSLTLWLDGKAFTGLIDTGADVTIIKQEDWPSHWPTTETLTHLRGIGQSSNPKQSSKYLTWTDKENNS
GLIKPFVIPYLPVNLWGRDLLSQMKIIMCSPNDIVTAQMLTQGYTPGKGLGKGENGIPQPILVSGQLDKKGFGNF
>IAPLTR3_pol#LTR/ERVK 3060-5669 via tfasty with ChIAP_pol, 1 stopcodon.  [Mus mouse genus]
LGAVGVTRPIPWVTEEPVWVSQWPLSSEKLEAVNKLVTEQVQLGHLEPSTSPWNTPIFAIKKKSGKWRLLHDLRAINAQM
NLFGSIQRGLPLLSTLPKQWKIVILDIKDCFFSIPLCHQDRPRFAFTIPALNHMEPDKRFQWKVLPQGMANSPTMCQLFV
QAALEPVRQYFPSLLLLHYMDDILLCHKDMMLLQKSYSFLIKMLNQWGLQIAAEKVQISEVGSFLGTIIFPDKILPQKLE
IRRDHLHTLNDFQKLLGSINWLRPFLKISSAELKPLFDILKGDSHISSPRALTPAANKALQVVENALQNAQLQRIEESQP
FNLCVFKTAQLPTAVLWQDGPLLWIHPNASPARVIDWYPNAVAQLALRGLKAAVTHFGRDPKLLIVPYTATQVQVLAATS
DDWAVLVTSFSGQIDNHYPRHPILQFALNQAIVFPQVTAKNPLPEGIIVYTDGSKTGVGAYVTNNKIVSKQYNETSPQIV
ECLVVLEVLKAFPGPLNIVSDSSYVVNAVNLLEAAGVIKSSSKVADIFQKIQAVLLHRRFPVYITHVRAHSGLPGPISRG
NDLADRATRVVAAALSSQVDAARNFHKQFHVTAETLRRCFALTRKEAREIVTQCQNCCQFLPVPHVGVNPRGIQPLQVWQ
MDVTHISSFRRLQYLHVSVDTCSGIIFASPLTGEKASHVIQHCLEAWSAWGQPKILKTDNGPAYTSQKFRQFCRQMNVTH
LTGLPYNPQGQGIVERAHRTLKSYLIKQKGGVDEALPLTPRVAVSMALFTLNFLNLDEQGHTAADRHCSEPNRPREMIKW
KDVLTGKWRGPDPILIRSRGAICVFPQEEDNPLWVPERLTxRISPSEDVDKRGNTETTMDTDPSTGDPGS
